LOCUS       NP_001404490             357 aa            linear   PLN 06-MAR-2023
DEFINITION  probable glucuronosyltransferase Os03g0287800 [Oryza sativa
            Japonica Group].
ACCESSION   NP_001404490 XP_015628241
VERSION     NP_001404490.1
DBSOURCE    REFSEQ: accession NM_001417561.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (residues 1 to 357)
  AUTHORS   Lee C, Teng Q, Zhong R, Yuan Y and Ye ZH.
  TITLE     Functional roles of rice glycosyltransferase family GT43 in xylan
            biosynthesis
  JOURNAL   Plant Signal Behav 9 (1), e27809 (2014)
   PUBMED   24525904
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AP014959.1, KJ206899.1, C73701.1 and CV726797.1.
            
            On Mar 6, 2023 this sequence version replaced XP_015628241.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: KJ206899.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMD00020310
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..357
                     /organism="Oryza sativa Japonica Group"
                     /db_xref="taxon:39947"
                     /chromosome="3"
                     /map="3"
     Protein         1..357
                     /product="probable glucuronosyltransferase Os03g0287800"
                     /note="GT43 family glycosyltransferase B; Os03g0287800"
                     /calculated_mol_wt=37721
     Region          21..342
                     /region_name="Glyco_tranf_GTA_type"
                     /note="Glycosyltransferase family A (GT-A) includes
                     diverse families of glycosyl transferases with a common
                     GT-A type structural fold; cl11394"
                     /db_xref="CDD:472172"
     Site            order(103,105,137,201,203)
                     /site_type="active"
                     /db_xref="CDD:132997"
     CDS             1..357
                     /gene="LOC4332485"
                     /gene_synonym="GT43B"
                     /coded_by="NM_001417561.1:308..1381"
                     /db_xref="GeneID:4332485"
ORIGIN      
        1 mgsstdhgga ggrgkkgsgs qlwkkallhs slcfvmgfft gfapssvsdw tsaavsaggv
       61 gsshvvrslh atggaavnrs llaqaaagav dagpqpllvv vtttestpsa agqraaaltr
      121 mahtlrlvpp pllwvvvean pdvaatarll rttglmyrhl tykdnftvad aaagkerhhq
      181 rnvalghieh hrlagvvlfa glgdtfdlrf fdqlrqirtf gawpvatmsq nerkvvvqgp
      241 acssssvagw fsmdlsnats pvavggagyg aaaarpreld vhgfafnssv lwdperwgry
      301 ptsepdksqd svkfvqqvvl edyskvrgip sdcsevmvwh vnttplpssq pspqnkr
//
LOCUS       NP_001404394             258 aa            linear   PLN 06-MAR-2023
DEFINITION  ethylene-responsive transcription factor ERF013 [Oryza sativa
            Japonica Group].
ACCESSION   NP_001404394 XP_015630150
VERSION     NP_001404394.1
DBSOURCE    REFSEQ: accession NM_001417465.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (residues 1 to 258)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI585516.1, AK068934.1, AU163476.1 and CI339578.1.
            
            On Mar 6, 2023 this sequence version replaced XP_015630150.1.
            
            ##Evidence-Data-START##
            Transcript is intronless :: AK068934.1 [ECO:0000345]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..258
                     /organism="Oryza sativa Japonica Group"
                     /db_xref="taxon:39947"
                     /chromosome="3"
                     /map="3"
     Protein         1..258
                     /product="ethylene-responsive transcription factor ERF013"
                     /note="Os03g0263000"
                     /calculated_mol_wt=25939
     Region          50..106
                     /region_name="AP2"
                     /note="DNA-binding domain in plant proteins such as
                     APETALA2 and EREBPs; smart00380"
                     /db_xref="CDD:197689"
     Site            order(51..52,54,56,58,60,64,66,73,75,78)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:237985"
     CDS             1..258
                     /gene="LOC4332331"
                     /coded_by="NM_001417465.1:56..832"
                     /db_xref="GeneID:4332331"
ORIGIN      
        1 mvkntsnkci aaagataaag lgggaascsg gggdgkvtta aaaalavrpy kgvrmrswgs
       61 wvseiraphq krriwlgsya tpeaaarayd aallclkgsd avlnfpssas srrrldihrg
      121 gtdsaagdms prsiqrvaaa aaaafdaaaa avvvdescsc saeamsstpt sgatslstlg
      181 ssgggdvldh attpsssssa aanvcspple gdhelwteld afaspkfmdl maaggtafss
      241 pweepeedge lmrlwsfc
//
LOCUS       NP_001404526             242 aa            linear   PLN 07-MAR-2023
DEFINITION  peroxisomal membrane protein 11-3 [Oryza sativa Japonica Group].
ACCESSION   NP_001404526 XP_015630855
VERSION     NP_001404526.1
DBSOURCE    REFSEQ: accession NM_001417597.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK287976.1 and CI447574.1.
            
            On Mar 7, 2023 this sequence version replaced XP_015630855.1.
            
            ##Evidence-Data-START##
            Transcript is intronless :: AK287976.1 [ECO:0000345]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..242
                     /organism="Oryza sativa Japonica Group"
                     /db_xref="taxon:39947"
                     /chromosome="3"
                     /map="3"
     Protein         1..242
                     /product="peroxisomal membrane protein 11-3"
                     /note="LOC_Os03g19010; Peroxin-11-3"
                     /calculated_mol_wt=25800
     Region          1..22
                     /region_name="Disordered.
                     /evidence=ECO:0000256|SAM:MobiDB-lite"
                     /note="propagated from UniProtKB/Swiss-Prot (Q10MN2.1)"
     Region          26..239
                     /region_name="PEX11"
                     /note="Peroxisomal biogenesis factor 11 (PEX11);
                     pfam05648"
                     /db_xref="CDD:398979"
     Site            103..123
                     /site_type="transmembrane region"
                     /note="propagated from UniProtKB/Swiss-Prot (Q10MN2.1)"
     Site            215..235
                     /site_type="transmembrane region"
                     /note="propagated from UniProtKB/Swiss-Prot (Q10MN2.1)"
     CDS             1..242
                     /gene="LOC4332579"
                     /gene_synonym="OsJ_010110; OsPEX11-3; PEX11-3"
                     /coded_by="NM_001417597.1:92..820"
                     /db_xref="GeneID:4332579"
ORIGIN      
        1 maaaaaaags sdsrkpaahp pprdflvhve aylsrrdgvd kllkisryaa rlalaagplp
       61 paasarlksf essvglsrka frlgkfvqnv nalrahphpp pavallaygg egvyyfleqf
      121 vwlakagllp ahllprlqrl sawaellgyv gsitikleei gklessvkmr lkegcreesd
      181 vvrtlrvkll lkrmsvvqdv adavmalgdv tdgkgllgss tlmasaglls alisahknwn
      241 sc
//
LOCUS       NP_001404521            1303 aa            linear   PLN 07-MAR-2023
DEFINITION  protein SCAR2 [Oryza sativa Japonica Group].
ACCESSION   NP_001404521 XP_015633219
VERSION     NP_001404521.1
DBSOURCE    REFSEQ: accession NM_001417592.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AP014959.1 and AK289171.1.
            
            On Mar 7, 2023 this sequence version replaced XP_015633219.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK289171.1, AK243032.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00008650,
                                           SAMD00020310 [ECO:0006172]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1303
                     /organism="Oryza sativa Japonica Group"
                     /db_xref="taxon:39947"
                     /chromosome="3"
                     /map="3"
     Protein         1..1303
                     /product="protein SCAR2"
                     /note="Os03g0298700"
                     /calculated_mol_wt=143329
     Region          <523..743
                     /region_name="PTZ00341"
                     /note="Ring-infected erythrocyte surface antigen;
                     Provisional"
                     /db_xref="CDD:173534"
     CDS             1..1303
                     /gene="LOC4332556"
                     /coded_by="NM_001417592.1:1280..5191"
                     /db_xref="GeneID:4332556"
ORIGIN      
        1 mplsrhevgn eyslggrely rranqhdpea vldgvamagl vgvlrqlgdl aefaaqvfhg
       61 lydevmtasa rghglmlrvq qleaelplve kdschtdyly vasnrgiewh snprlesgvv
      121 tkgdtprfim dsikkchgpp klfmldkydi ggegaclkry tdpsffktds acssmleqgi
      181 qrerrplram eirptlqnse ifrppnaann dskletdlsg ealdevptrr rqlkyrqlng
      241 svfrsfrpqm qnlygetspd ekpcsmnhse vqisftdspd tnteerdimv dtfssmdkgk
      301 ennyvmagkn rllseealsr ssdarsagss kgynsevdiy vdalttmdse vetdtehrdh
      361 ghralvpves skpcsdvhga avsgsisfrn ngsmvpnssd vvpaeeennd hhqgyvcvps
      421 pqakpvageh ersssleelf aqekpvsceh ertssleell lgdvhpsghn mrssatesnt
      481 ngvvstvesn gtvgttkkek dnpiiagisf kktaskksky vgsmelivsk vgilprklsk
      541 khdpfsdslr nmakqllelk idgtkdtely efeangegcd mkclemshpp ieimgsatqs
      601 vppdspqdnv dsracrpeev nqeydhdvpp sdspqdsvdg nvfrdiallr sqeeqqcagp
      661 vtvdnlldha pentqdqige hfyrevtedi htevvpengp digeeleegs iteekvneed
      721 veesnesday tldenteyie eqvvsddlis spisskqsdd pcqmapltlt daddalagkn
      781 vdndisemhi tlsgtitesn vstvvvesat tndvavqyne qcclhpetsf aqdlthvssc
      841 evegqneplp lcsssmvgtt pdlsvdteei henpilcids ssdlfrdala pdsrdvplpn
      901 issfdwmlng amqkslnvlp akppngilqe nnsskdteda ppplpplppm qwrttklqpg
      961 pavlsakfgr pprpkppvky qenesyssqd ernrepeilq easlqngsts vtpekemvva
     1021 kvsneiqtni mfgrdsqesh lkglneydvq asdsfstsef ksvggvasve gdnletsqls
     1081 elivipeeaw selvdiksis gqekggkrql stgvfncngm httglsaekr ddykiydqne
     1141 knllagkgna iadseekepn gvtcqddtkn sdllvqqedg qhdssagtar essssfeeev
     1201 akfspprvpt ppkyplfqvt ahdrsmlkra ptlvqpsikl sdenntileq iknksfnlkp
     1261 vlakrpnmmg aprtnlqvva ileranairq avaddddeds wsd
//
LOCUS       NP_001128667             540 aa            linear   PRI 08-MAR-2023
DEFINITION  zinc transporter ZIP5 precursor [Homo sapiens].
ACCESSION   NP_001128667
VERSION     NP_001128667.1
DBSOURCE    REFSEQ: accession NM_001135195.1
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (residues 1 to 540)
  AUTHORS   Polesel M, Ingles-Prieto A, Christodoulaki E, Ferrada E, Doucerain
            C, Altermatt P, Knecht M, Kuhn M, Steck AL, Wilhelm M and Manolova
            V.
  TITLE     Functional characterization of SLC39 family members ZIP5 and ZIP10
            in overexpressing HEK293 cells reveals selective copper transport
            activity
  JOURNAL   Biometals 36 (1), 227-237 (2023)
   PUBMED   36454509
  REMARK    GeneRIF: Functional characterization of SLC39 family members ZIP5
            and ZIP10 in overexpressing HEK293 cells reveals selective copper
            transport activity.
REFERENCE   2  (residues 1 to 540)
  AUTHORS   Lin E, Tsai SJ, Kuo PH, Liu YL, Yang AC, Conomos MP and Thornton
            TA.
  TITLE     Genome-wide association study in the Taiwan Biobank identifies four
            novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5
  JOURNAL   Hum Mol Genet 30 (23), 2362-2369 (2021)
   PUBMED   34270706
  REMARK    GeneRIF: Genome-wide association study in the Taiwan Biobank
            identifies four novel genes for human height: NABP2, RASA2, RNF41
            and SLC39A5.
REFERENCE   3  (residues 1 to 540)
  AUTHORS   Dong S, Tian Q, Zhu T, Wang K, Lei G, Liu Y, Xiong H, Shen L, Wang
            M, Zhao R, Wu H, Li B, Zhang Q, Yao Y, Guo H, Xia K, Xia L and Hu
            Z.
  TITLE     SLC39A5 dysfunction impairs extracellular matrix synthesis in high
            myopia pathogenesis
  JOURNAL   J Cell Mol Med 25 (17), 8432-8441 (2021)
   PUBMED   34302427
  REMARK    GeneRIF: SLC39A5 dysfunction impairs extracellular matrix synthesis
            in high myopia pathogenesis.
REFERENCE   4  (residues 1 to 540)
  AUTHORS   Liu Z, Hu Z, Cai X and Liu S.
  TITLE     SLC39A5 promotes lung adenocarcinoma cell proliferation by
            activating PI3K/AKT signaling
  JOURNAL   Pathol Res Pract 224, 153541 (2021)
   PUBMED   34252710
  REMARK    GeneRIF: SLC39A5 promotes lung adenocarcinoma cell proliferation by
            activating PI3K/AKT signaling.
REFERENCE   5  (residues 1 to 540)
  AUTHORS   Li Q, Jin J, Liu J, Wang L and He Y.
  TITLE     Knockdown of Zinc Transporter ZIP5 by RNA Interference Inhibits
            Esophageal Cancer Growth In Vivo
  JOURNAL   Oncol Res 24 (3), 205-214 (2016)
   PUBMED   27458102
  REMARK    GeneRIF: we found that downregulation of ZIP5 by RNA interference
            inhibited esophageal cancer growth in vivo, reduced the expression
            of COX2, and promoted the expression of E-cadherin.
REFERENCE   6  (residues 1 to 540)
  AUTHORS   Guo H, Jin X, Zhu T, Wang T, Tong P, Tian L, Peng Y, Sun L, Wan A,
            Chen J, Liu Y, Li Y, Tian Q, Xia L, Zhang L, Pan Y, Lu L, Liu Q,
            Shen L, Li Y, Xiong W, Li J, Tang B, Feng Y, Zhang X, Zhang Z, Pan
            Q, Hu Z and Xia K.
  TITLE     SLC39A5 mutations interfering with the BMP/TGF-beta pathway in
            non-syndromic high myopia
  JOURNAL   J Med Genet 51 (8), 518-525 (2014)
   PUBMED   24891338
REFERENCE   7  (residues 1 to 540)
  AUTHORS   Gonzales PA, Pisitkun T, Hoffert JD, Tchapyjnikov D, Star RA, Kleta
            R, Wang NS and Knepper MA.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
REFERENCE   8  (residues 1 to 540)
  AUTHORS   Wang F, Kim BE, Petris MJ and Eide DJ.
  TITLE     The mammalian Zip5 protein is a zinc transporter that localizes to
            the basolateral surface of polarized cells
  JOURNAL   J Biol Chem 279 (49), 51433-51441 (2004)
   PUBMED   15322118
  REMARK    GeneRIF: Zip5 protein is a zinc transporter that localizes to the
            basolateral surface of polarized cells
REFERENCE   9  (residues 1 to 540)
  AUTHORS   Taylor KM, Morgan HE, Johnson A, Hadley LJ and Nicholson RI.
  TITLE     Structure-function analysis of LIV-1, the breast cancer-associated
            protein that belongs to a new subfamily of zinc transporters
  JOURNAL   Biochem J 375 (Pt 1), 51-59 (2003)
   PUBMED   12839489
REFERENCE   10 (residues 1 to 540)
  AUTHORS   Taylor KM and Nicholson RI.
  TITLE     The LZT proteins; the LIV-1 subfamily of zinc transporters
  JOURNAL   Biochim Biophys Acta 1611 (1-2), 16-30 (2003)
   PUBMED   12659941
  REMARK    Review article
COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
            reference sequence was derived from DA640935.1 and AK172768.1.
            
            Summary: The protein encoded by this gene belongs to the ZIP family
            of zinc transporters that transport zinc into cells from outside,
            and play a crucial role in controlling intracellular zinc levels.
            Zinc is an essential cofactor for many enzymes and proteins
            involved in gene transcription, growth, development and
            differentiation. Mutations in this gene have been associated with
            autosomal dominant high myopia (MYP24). Alternatively spliced
            transcript variants have been found for this gene. [provided by
            RefSeq, Sep 2014].
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. Both variants 1 and 2 encode the same protein.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK172768.1, ERR279842.8274.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA1968540, SAMEA1970526
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Homo sapiens"
                     /db_xref="taxon:9606"
                     /chromosome="12"
                     /map="12q13.3"
     Protein         1..540
                     /product="zinc transporter ZIP5 precursor"
                     /note="zinc transporter ZIP5; zrt- and Irt-like protein 5;
                     solute carrier family 39 (zinc transporter), member 5;
                     solute carrier family 39 (metal ion transporter), member
                     5; zinc transporter 5; ZRT/IRT-like protein 5"
                     /calculated_mol_wt=53976
     sig_peptide     1..24
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
                     /calculated_mol_wt=2503
     mat_peptide     25..540
                     /product="zinc transporter ZIP5"
                     /calculated_mol_wt=53976
     Region          248..504
                     /region_name="Zip"
                     /note="ZIP Zinc transporter; pfam02535"
                     /db_xref="CDD:396884"
     CDS             1..540
                     /gene="SLC39A5"
                     /gene_synonym="LZT-Hs7; MYP24; ZIP5"
                     /coded_by="NM_001135195.1:229..1851"
                     /db_xref="CCDS:CCDS8912.2"
                     /db_xref="GeneID:283375"
                     /db_xref="HGNC:HGNC:20502"
                     /db_xref="MIM:608730"
ORIGIN      
        1 mmgspvshll agfcvwvvlg wvggsvpnlg paeqeqnhyl aqlfglygen gtltagglar
       61 llhslglgrv qglrlgqhgp ltgraaspaa dnsthrpqnp elsvdvwagm plgpsgwgdl
      121 eeskaphlpr gpapsgldll hrlllldhsl adhlnedcln gsqllvnfgl spaapltprq
      181 fallcpally qidsrvciga papappgdll sallqsalav lllslpspls llllrllgpr
      241 llrpllgflg alavgtlcgd allhllphaq egrhagpggl pekdlgpgls vlgglfllfv
      301 lenmlgllrh rglrprccrr krrnletrnl dpengsgmal qplqaapepg aqgqreknsq
      361 hppalappgh qghshghqgg tditwmvllg dglhnltdgl aigaafsdgf ssglsttlav
      421 fchelphelg dfamllqsgl sfrrllllsl vsgalglgga vlgvglslgp vpltpwvfgv
      481 tagvflyval vdmlpallrp peplptphvl lqglglllgg glmlaitlle erllpvtteg
//
LOCUS       XP_053911502             276 aa            linear   VRT 09-MAR-2023
DEFINITION  plectin-like, partial [Cuculus canorus].
ACCESSION   XP_053911502
VERSION     XP_053911502.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055527.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527752) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: incomplete on the carboxy end.
FEATURES             Location/Qualifiers
     source          1..276
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="2"
                     /map="unlocalized"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..>276
                     /product="plectin-like"
     Region          39..155
                     /region_name="CH_PLEC-like_rpt1"
                     /note="first calponin homology (CH) domain found in the
                     plectin/dystonin/MACF1 family; cd21188"
                     /db_xref="CDD:409037"
     Site            order(42,46,108,110..111,114..115,117,126..134,139,
                     141..142,144..145,148..149,152)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409037"
     Region          168..273
                     /region_name="CH_SF"
                     /note="calponin homology (CH) domain superfamily; cl00030"
                     /db_xref="CDD:469584"
     Site            order(174,224,226..227,230..231,233,246..250,257,259..260,
                     262..263,266..267,270)
                     /site_type="other"
                     /note="actin binding site [polypeptide binding]"
                     /db_xref="CDD:409031"
     CDS             1..276
                     /gene="LOC128850575"
                     /coded_by="XM_054055527.1:39..>866"
                     /db_xref="GeneID:128850575"
ORIGIN      
        1 medtgslfps lvaaghaaal alawycrgra dpgpqderdr vqkktftkwv nkhllkaqrh
       61 vhdlyedlrd ghnlisllev lsgdalprer dvlrtlrlpr ekgrmrfhkl qnvqialnyl
      121 khrqvklvni rnddiadgnp kltlgliwti ilhfqisdiq vsgqsedmta keklllwsqr
      181 mvegyqglrc dnfttswrdg rlfnaiihrh kpalidmsrv lrqsnlenle qafaaaerdl
      241 gvtrlldped vdvpqpdeks iityvsslyd amprvp
//
LOCUS       XP_053911503            3485 aa            linear   VRT 09-MAR-2023
DEFINITION  plectin, partial [Cuculus canorus].
ACCESSION   XP_053911503
VERSION     XP_053911503.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055528.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527752) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: incomplete on the amino end.
FEATURES             Location/Qualifiers
     source          1..3485
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="2"
                     /map="unlocalized"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         <1..3485
                     /product="plectin"
     Region          <13..>607
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          <343..>873
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          855..>1431
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          <1272..>1634
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          1693..1728
                     /region_name="PLEC"
                     /note="Plectin repeat; smart00250"
                     /db_xref="CDD:197605"
     Region          1731..1769
                     /region_name="Plectin"
                     /note="Plectin repeat; pfam00681"
                     /db_xref="CDD:459901"
     Region          1987..2025
                     /region_name="Plectin"
                     /note="Plectin repeat; pfam00681"
                     /db_xref="CDD:459901"
     Region          2024..2060
                     /region_name="PLEC"
                     /note="Plectin repeat; smart00250"
                     /db_xref="CDD:197605"
     Region          2063..2101
                     /region_name="Plectin"
                     /note="Plectin repeat; pfam00681"
                     /db_xref="CDD:459901"
     Region          2280..2318
                     /region_name="Plectin"
                     /note="Plectin repeat; pfam00681"
                     /db_xref="CDD:459901"
     Region          2318..2356
                     /region_name="Plectin"
                     /note="Plectin repeat; pfam00681"
                     /db_xref="CDD:459901"
     Region          2394..2432
                     /region_name="Plectin"
                     /note="Plectin repeat; pfam00681"
                     /db_xref="CDD:459901"
     Region          2612..2650
                     /region_name="Plectin"
                     /note="Plectin repeat; pfam00681"
                     /db_xref="CDD:459901"
     Region          2650..2688
                     /region_name="Plectin"
                     /note="Plectin repeat; pfam00681"
                     /db_xref="CDD:459901"
     Region          2687..2723
                     /region_name="PLEC"
                     /note="Plectin repeat; smart00250"
                     /db_xref="CDD:197605"
     Region          2726..2764
                     /region_name="Plectin"
                     /note="Plectin repeat; pfam00681"
                     /db_xref="CDD:459901"
     Region          2853..2890
                     /region_name="PLEC"
                     /note="Plectin repeat; smart00250"
                     /db_xref="CDD:197605"
     Region          2893..2931
                     /region_name="Plectin"
                     /note="Plectin repeat; pfam00681"
                     /db_xref="CDD:459901"
     Region          2930..2961
                     /region_name="PLEC"
                     /note="Plectin repeat; smart00250"
                     /db_xref="CDD:197605"
     Region          2969..3007
                     /region_name="Plectin"
                     /note="Plectin repeat; pfam00681"
                     /db_xref="CDD:459901"
     Region          <3070..3098
                     /region_name="Plectin"
                     /note="Plectin repeat; pfam00681"
                     /db_xref="CDD:459901"
     Region          3201..3237
                     /region_name="PLEC"
                     /note="Plectin repeat; smart00250"
                     /db_xref="CDD:197605"
     Region          3240..3278
                     /region_name="Plectin"
                     /note="Plectin repeat; pfam00681"
                     /db_xref="CDD:459901"
     Region          3316..3354
                     /region_name="Plectin"
                     /note="Plectin repeat; pfam00681"
                     /db_xref="CDD:459901"
     CDS             1..3485
                     /gene="PLEC"
                     /coded_by="XM_054055528.1:<1..10459"
                     /codon_start=2
                     /db_xref="GeneID:128850576"
ORIGIN      
        1 lktvevvlrs sgdaeetlrr yeealtaapt vprdlaelrd ataalqrlra qtdghrplfa
       61 alaaaleasd avderllrgh gerdvdleqc rqrgrrlrqr weaavaqvel rlrhlealgr
      121 hlrsyrqscd alrrwsddar qrqqrihaqr iadsrsarqq llqekellse ceghkeavde
      181 cqrfarhyid aikdyelqlm sfeaqveppa sppkkpkvqs asdsviqeyv evrtrysels
      241 alsaqriqfi aetlrrmdde ekaaaeqkaa eqqrlaevea qlaaqrqlae aharakaeae
      301 aearelqrrm eeeasrreaa avdaeqqkqq ieqelqelrr sserqreara tqaeaaelsr
      361 rkveeeigai rlqlrsteaq rgaaeaelqq lraraeeaer qkraaqeeae rlrrqvsdes
      421 qrkrqaeeel rqkvqaerea arekqaalaq lealrlqaee aerrlrqaea eqerqlrlaq
      481 eaaqrsaeae lqskrlslae kaaqlerslq eeqqavaqlq eeaerrarlq reaeggrdea
      541 ekelerwrqk anealrlrlr aeevaqqkal aqeeaerqke daerqarkra kaeeaalrqk
      601 eaaerqleaq reaaeaaaqq klwaeqelir lkaelengeq qrllleeelr rlqaqageaa
      661 rrreelerel aqlraevell qrskaraeee srsssesskq rleaeaaklr rlaeeaarlr
      721 aladeaqrqr qaaedeagrr rdeaervlqe klaavseasr lkaeaeialk ekeaenerlr
      781 rlaedeafrr rqleeqaaqh kadieeriaq lqrasdgelq rqkavaeeal rqrrsveeei
      841 galklgfeka aagkgelere lgrlraeaee aqrcrlqaer eaerqraqal qeegrrreae
      901 erlqavlaae eeaarqrraa lgeverlqaa aeearrqkea aeqeaerqvq aareaaqkrl
      961 eaeerahaaa vqekerelqq trqqeqsale rlrqeaegar raadeaeaar akaerearls
     1021 rqrveeaerl reraeeeaqa karaqaeaek lrreaeleaa araqaeeaal rqkgladaem
     1081 ekhkkfaeqt lrqkaqveqe larlrlqleq tdrqkallde elrrrkeeaa eaarqraqge
     1141 eellrlraql eelarlkari edenkalvlr gqddaqklla eeaekmrqva eevarlglea
     1201 aeaarlrqla eddlaqqraa adamlreklq avqeaarlra eaellqkqka qaqeqaerlr
     1261 ddkeqmrrrl dretegfqra leaerrrqle mtaeaeglkl rvaelsaaqa kaeeeaerfr
     1321 lqaqeisgrl hqtematqek mtlvhtlelq rhrsdedaek lraaiaelqr ekeklqreaa
     1381 alqqkaeemq eaqqaqlrqe aqqlqesfvt ekeallqker sveeekakle rlfeaevaka
     1441 qglraqqerq qremeeekrr lqamldeaqr qqreaedsvr qqrdelqrle aqrrqteall
     1501 eeenqklrqr lqrlqddyra alaqtreimi qtddlpeaaa vaamagdaga vpngrdaadg
     1561 pshngeehaf lfeglrqkvs aaqlaaagvl sresverlae gavsvgelaq rddvrrylrg
     1621 ggciaglllq pagrkvsiye amkaqllsag aaaalleaqa asgfvvdpar naalsvseav
     1681 regvvgpelh gellaaerav tgytdpytge kislfqamkk eligeergrr llevqiatgg
     1741 vidpvhshrl pleaayergc ldeethrvlt dpgaaatkgf sdpstqerls yaqllqrcvt
     1801 eeatglrllp lsesaadaaq rlldggtaea edvfkkatvt apfgqfrgkt vtiwevinse
     1861 yfteeqrrdl lqqyrsgkvt vekviriiit vveeserkrq lcfaglrapv aadellacgv
     1921 ldrglyeelr rgekavkdva eteavrpflr gsdaviagvl vessgekltf yealrrnllr
     1981 pevavallea qaaagfivdp vrnelfsvde avkaavvgpe lhekllsaer avtgykdpyt
     2041 gqtvslfqal rkgllpsgta lrllsvqlat ggivdpvhsh rlplaaayer ghldpemkea
     2101 lsepgedtea fycpnsrerl syarlqekcr rdertglrll plsdgairaq reelysdgqa
     2161 qerldratve vpvggwkgrt vtvwellrse yfteeqrrel lrqfqsgkvt vekvikivit
     2221 iveeaeakkq ekltfsglra pvpagellas rvlspaqyeq ltegtktvke laetpavraf
     2281 lhggdciagv yveatkekln iyeamrrell rpevavalle aqaatgflvd avknrklyvn
     2341 eavkggvvgp elhekllsae kavtgykdpy sgdtvslfqa mkkglvaqeh grrlleaqla
     2401 tggivdpvhs hrlplavaye rgcldeemhr slsepgaaaa afsepstqek lsyarlkerc
     2461 vedpetglll lplrqapalv ettevyteee trkaleetrv dipagsrags smslweilqs
     2521 dllpeeqrkr lteefrsgrv skerliiiiv eiiekteiir qqnltsydyv rrritaedly
     2581 eakiisldvy nllkegaktf relldveavw kylygsgcva giflpaskqk lsvyqalkkg
     2641 ligaeaarsl leaqaatgfv idpvknemlt vdeavrkgvv gpemhdrlls aeravtgyrd
     2701 pyseqkisvf qamkkelips eealklldaq matggvvdpr lgfhlpleva fqrglldret
     2761 qaalsepsev rayvdpstee klsyaqllkr crkdeasgll llplgdargl tfrglrkqit
     2821 veellrsqvm deatarrlqe gltsveevsk nlqkflegts ciagvfvdst kerlsvyqam
     2881 kkgiirpgta felleaqaat gyvidpikgl kltveeavrm givgpefkdk llsaeravtg
     2941 yrdpysgkli slfqamkkgl ilkdhgirll eaqiatggii dpeeshrlpv evaykrglfd
     3001 eemneilldp sddtkgffdp nteenltylq lmercvtdpe tglcllplke kkrerktssk
     3061 ssvrkrrvvi vdpetgkems vyeayrkgli dhqtylelse qeceweeitt sssdgvvksm
     3121 iidrrsgrqy diddaigkgl idqsaldqyr sgalsitefa dmlsgnaggf rsrsssvgss
     3181 sssaysvgpt parphlsaws dpseetgpva gildtdtlek vsiteamrrn lvdnitgqrl
     3241 leaqactggi idpgsgekcs vadavakglv dkmmvdrinl aqkafygfed prtktkmsaa
     3301 qalkkgwlyy eagqrflevq yltggliepd aagrvsldea lqkgtidart aqklrdvhty
     3361 skyltcpktk lkisykdame rsmiedgtgl rlleasahst kgyyspynvs gagsaagsrs
     3421 gsrtgsrsgs rrgsfdatas gfsmtfssss yssssfgrry apavscgrea ggerdgprgs
     3481 plrva
//
LOCUS       XP_053911504             505 aa            linear   VRT 09-MAR-2023
DEFINITION  acrosin-like [Cuculus canorus].
ACCESSION   XP_053911504
VERSION     XP_053911504.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055529.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527753) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 50% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..505
                     /product="acrosin-like"
                     /calculated_mol_wt=54912
     Region          145..381
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            146
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(190,239,336)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(330,357,359)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     Region          <432..>499
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cl21584"
                     /db_xref="CDD:473915"
     CDS             1..505
                     /gene="LOC128850577"
                     /coded_by="XM_054055529.1:1..1518"
                     /db_xref="GeneID:128850577"
ORIGIN      
        1 mgvlgpkirl vavkirvlap evsvlapvrc gtaaaarsal lrgqwpilpg sgadggvgqv
       61 cpalggrspg lpgsrgtfar strhsgdgrq vypalggrss glpedevahr sfqrfrriff
      121 laspesftag rvqergrssq vgsvrvvggr daqpgswpgi vsvqkvrekh vfhacggsli
      181 hpqwvltaah cfvnsqdvpa whvvagttsl tdmgpetqhs yvrqiiihdd ydtttqandi
      241 almelheplq ctpyvqlacv pdfslqlrql rncyvggwgv ttarsggllp slqeakvpli
      301 dlqvcnssgw yhgdihphnl cagypqggid tcqgdsggpl vcqdphadhf wlvgvtsfgv
      361 gcararrpgi yastqyfrqw iliqmampss eawhiykalq cspyvqlacv pdfslrlwel
      421 rnlyvsswgv ttatswhvva ginnlaqegp evqagyvrri ldhkgynnit mandislmel
      481 heplqsspyv qracvpdfsl rlwel
//
LOCUS       XP_053911505             498 aa            linear   VRT 09-MAR-2023
DEFINITION  acrosin-like [Cuculus canorus].
ACCESSION   XP_053911505
VERSION     XP_053911505.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055530.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527753) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 49% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..498
                     /product="acrosin-like"
                     /calculated_mol_wt=53488
     Region          218..454
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            219
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(263,312,409)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(403,430,432)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..498
                     /gene="LOC128850578"
                     /coded_by="XM_054055530.1:1..1497"
                     /db_xref="GeneID:128850578"
ORIGIN      
        1 mgvlgpkirp vavkirvlap evsvlapvrc gtaaaarsal lrgqwpilpg sgadggvgqv
       61 ypalggdgrq vypalggrsp glpgtrgtvv rstrlsgdvr qvypalggrs sglpedevah
      121 rsfqrfrris flaspesfta grvqeryglw ptlsnadrtq rgveraatfr wcwrsftegs
      181 tdaagpppak vtvtrgittp rglrvrcrgr ssqvgsvrvv ggrdaqpgsw pgivsvqkvr
      241 ekhvfhacgg slihpqwvlt aahcfvnsqd vpvwrvvagt tsltdmgpet qhsyvrqiii
      301 hddydtttqa ndialmelye plqctpyvql acvpdfslql rqlrncyvgg wgvttarsgg
      361 lppslqeakv plidlqvcns sgwyhgdihp hnlcagylqg gidtcqgdsg gplvcqdpha
      421 dhfwlvgvts fgvgcararq pgiyastqyf rqwiliqmam psseawhsrl cqspsagglh
      481 lhtalpelda dsdhaals
//
LOCUS       XP_053911507             135 aa            linear   VRT 09-MAR-2023
DEFINITION  A-kinase anchor protein 13-like [Cuculus canorus].
ACCESSION   XP_053911507
VERSION     XP_053911507.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055532.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527753) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 9% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..135
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..135
                     /product="A-kinase anchor protein 13-like"
                     /calculated_mol_wt=15393
     Region          2..>51
                     /region_name="PRK12704"
                     /note="phosphodiesterase; Provisional"
                     /db_xref="CDD:237177"
     CDS             1..135
                     /gene="LOC128850579"
                     /coded_by="XM_054055532.1:1..408"
                     /db_xref="GeneID:128850579"
ORIGIN      
        1 mekearlaqr eqqlrrwwed lererkelqk ekasfqlegq sqtsslqkkv arfpsqsgvt
       61 easkekspar pqqghvesep sisprsksll ralkekspfr spgrantmdq aaeeqpgcqt
      121 assvqpkprg rrrrr
//
LOCUS       XP_053911508             298 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850580 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911508
VERSION     XP_053911508.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055533.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527753) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..298
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..298
                     /product="uncharacterized protein LOC128850580 isoform X1"
                     /calculated_mol_wt=32769
     CDS             1..298
                     /gene="LOC128850580"
                     /coded_by="XM_054055533.1:1769..2665"
                     /db_xref="GeneID:128850580"
ORIGIN      
        1 mcllsiteng evsvcsgqgr ldrgpsslga eltlllptgl ipkdyrslkt qylqsygpeh
       61 lltfhnlkri gllteqsaae tltavesrvs klvtdraaae sqpsapgelg aqpcpagscc
      121 sragwkhaak vdtagtelra gqsfgpweqq gwqersqmhl ilwperaifq learswgwyv
      181 lvellpcpra rwcqsssghs vqaghpqrht rhraraavav gwqretreqr gsrmaerfqn
      241 gkglwecqrg sgvpegfgkg kavqgwkkds rmpeglrncr gvwgcqresg vagrfrna
//
LOCUS       XP_053911509             298 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850580 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911509
VERSION     XP_053911509.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055534.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527753) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..298
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..298
                     /product="uncharacterized protein LOC128850580 isoform X1"
                     /calculated_mol_wt=32769
     CDS             1..298
                     /gene="LOC128850580"
                     /coded_by="XM_054055534.1:1761..2657"
                     /db_xref="GeneID:128850580"
ORIGIN      
        1 mcllsiteng evsvcsgqgr ldrgpsslga eltlllptgl ipkdyrslkt qylqsygpeh
       61 lltfhnlkri gllteqsaae tltavesrvs klvtdraaae sqpsapgelg aqpcpagscc
      121 sragwkhaak vdtagtelra gqsfgpweqq gwqersqmhl ilwperaifq learswgwyv
      181 lvellpcpra rwcqsssghs vqaghpqrht rhraraavav gwqretreqr gsrmaerfqn
      241 gkglwecqrg sgvpegfgkg kavqgwkkds rmpeglrncr gvwgcqresg vagrfrna
//
LOCUS       XP_053911510             298 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850580 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911510
VERSION     XP_053911510.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055535.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527753) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..298
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..298
                     /product="uncharacterized protein LOC128850580 isoform X1"
                     /calculated_mol_wt=32769
     CDS             1..298
                     /gene="LOC128850580"
                     /coded_by="XM_054055535.1:484..1380"
                     /db_xref="GeneID:128850580"
ORIGIN      
        1 mcllsiteng evsvcsgqgr ldrgpsslga eltlllptgl ipkdyrslkt qylqsygpeh
       61 lltfhnlkri gllteqsaae tltavesrvs klvtdraaae sqpsapgelg aqpcpagscc
      121 sragwkhaak vdtagtelra gqsfgpweqq gwqersqmhl ilwperaifq learswgwyv
      181 lvellpcpra rwcqsssghs vqaghpqrht rhraraavav gwqretreqr gsrmaerfqn
      241 gkglwecqrg sgvpegfgkg kavqgwkkds rmpeglrncr gvwgcqresg vagrfrna
//
LOCUS       XP_053911511             269 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850580 isoform X2 [Cuculus canorus].
ACCESSION   XP_053911511
VERSION     XP_053911511.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055536.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527753) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..269
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..269
                     /product="uncharacterized protein LOC128850580 isoform X2"
                     /calculated_mol_wt=29874
     Region          <2..>48
                     /region_name="Sec1"
                     /note="Sec1 family; cl15415"
                     /db_xref="CDD:472804"
     CDS             1..269
                     /gene="LOC128850580"
                     /coded_by="XM_054055536.1:1757..2566"
                     /db_xref="GeneID:128850580"
ORIGIN      
        1 mcllsiteng lipkdyrslk tqylqsygpe hlltfhnlkr igllteqsaa etltavesrv
       61 sklvtdraaa esqpsapgel gaqpcpagsc csragwkhaa kvdtagtelr agqsfgpweq
      121 qgwqersqmh lilwperaif qlearswgwy vlvellpcpr arwcqsssgh svqaghpqrh
      181 trhraraava vgwqretreq rgsrmaerfq ngkglwecqr gsgvpegfgk gkavqgwkkd
      241 srmpeglrnc rgvwgcqres gvagrfrna
//
LOCUS       XP_053911512             269 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850580 isoform X2 [Cuculus canorus].
ACCESSION   XP_053911512
VERSION     XP_053911512.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055537.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527753) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..269
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..269
                     /product="uncharacterized protein LOC128850580 isoform X2"
                     /calculated_mol_wt=29874
     Region          <2..>48
                     /region_name="Sec1"
                     /note="Sec1 family; cl15415"
                     /db_xref="CDD:472804"
     CDS             1..269
                     /gene="LOC128850580"
                     /coded_by="XM_054055537.1:471..1280"
                     /db_xref="GeneID:128850580"
ORIGIN      
        1 mcllsiteng lipkdyrslk tqylqsygpe hlltfhnlkr igllteqsaa etltavesrv
       61 sklvtdraaa esqpsapgel gaqpcpagsc csragwkhaa kvdtagtelr agqsfgpweq
      121 qgwqersqmh lilwperaif qlearswgwy vlvellpcpr arwcqsssgh svqaghpqrh
      181 trhraraava vgwqretreq rgsrmaerfq ngkglwecqr gsgvpegfgk gkavqgwkkd
      241 srmpeglrnc rgvwgcqres gvagrfrna
//
LOCUS       XP_053911513             269 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850580 isoform X2 [Cuculus canorus].
ACCESSION   XP_053911513
VERSION     XP_053911513.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055538.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527753) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..269
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..269
                     /product="uncharacterized protein LOC128850580 isoform X2"
                     /calculated_mol_wt=29874
     Region          <2..>48
                     /region_name="Sec1"
                     /note="Sec1 family; cl15415"
                     /db_xref="CDD:472804"
     CDS             1..269
                     /gene="LOC128850580"
                     /coded_by="XM_054055538.1:1749..2558"
                     /db_xref="GeneID:128850580"
ORIGIN      
        1 mcllsiteng lipkdyrslk tqylqsygpe hlltfhnlkr igllteqsaa etltavesrv
       61 sklvtdraaa esqpsapgel gaqpcpagsc csragwkhaa kvdtagtelr agqsfgpweq
      121 qgwqersqmh lilwperaif qlearswgwy vlvellpcpr arwcqsssgh svqaghpqrh
      181 trhraraava vgwqretreq rgsrmaerfq ngkglwecqr gsgvpegfgk gkavqgwkkd
      241 srmpeglrnc rgvwgcqres gvagrfrna
//
LOCUS       XP_053911514             256 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein-like [Cuculus canorus].
ACCESSION   XP_053911514
VERSION     XP_053911514.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055539.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527753) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..256
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..256
                     /product="hydrocephalus-inducing protein-like"
                     /calculated_mol_wt=27701
     CDS             1..256
                     /gene="LOC128850581"
                     /coded_by="XM_054055539.1:2..772"
                     /db_xref="GeneID:128850581"
ORIGIN      
        1 megteetgsl qrrqftqaep vsvgieevfn ilplhgvllp gesqrvmftf fghanivagv
       61 malcrveggp tyevalsgea slinyvldna eidyglqgfn kvgeaevtlr nsgkvgftya
      121 vlspsvatag cprpreplvl pstgyvgagk eqalkvyylp gvpggfcrtf qvqvghlepe
      181 eislkgegsf prislelprn ikgnekyekv lkgakekmeq dsqrdeavvl getvaaetar
      241 apcwslvcrc rwsrcc
//
LOCUS       XP_053911515             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911515
VERSION     XP_053911515.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055540.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527753) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=34895
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850584"
                     /coded_by="XM_054055540.1:46..1002"
                     /db_xref="GeneID:128850584"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 llnlsvldlg sistivpksm anslsgkrai syagclaqvl lymffivaey slltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flyallhtan tfslplcqgn aveqffceip
      181 qilklscshs yiwefglltv safvafgcfv fivvsyvqif ravlrfpsek gqhkafstcl
      241 phlavvslfi stgvfaylkp psisspsldl vvsflysvvp palnpliysl rnqqlkdavw
      301 klitgcfsea mncslssa
//
LOCUS       XP_053911516             351 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911516
VERSION     XP_053911516.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055541.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527754) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 12% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..351
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..351
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=38362
     Region          56..325
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          90..116
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(112,115..116,128..133,135..136,139,184,186..190,226,
                     229..231,233..235,237..238,283,286..287,289..290,293,
                     299..300,302..304,307,310..311)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          128..158
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          170..191
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          226..256
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          263..293
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          300..325
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..351
                     /gene="LOC128850585"
                     /coded_by="XM_054055541.1:1..1056"
                     /db_xref="GeneID:128850585"
ORIGIN      
        1 mvdllhspal shrglgdlag edrvpldqcl ldadvqsssi tqflllafad trqlqllhfw
       61 lflgiylaal lgngliitti acdhhlhtpm yffllnlsvi dlgsisttvp ksmanslwdn
      121 rsishsgcvs qvfllvffis aeyslltims ydryvaickp lhygtllgsr acvhmaaaaw
      181 gagflhallh tantfslplc qgnaleqffc eipqilklsc shsdlrevgl ldvtacllfg
      241 cfvfivvsyv qifravlrip seqgrhkafs tclphlavvs lfvstgtfay lkppsnssas
      301 ldlvvsvlys vvppalnpli yslrnqqlkd avwklisgwf sesmscssps s
//
LOCUS       XP_053911518             317 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911518
VERSION     XP_053911518.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055543.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527754) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..317
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..317
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=34921
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..317
                     /gene="LOC128850586"
                     /coded_by="XM_054055543.1:1..954"
                     /db_xref="GeneID:128850586"
ORIGIN      
        1 msnsssitqf llltfadtre lqllhfwlfl giylaallgn glifttiacd hhlhipmyff
       61 llnlsvldlg sittvvpkam anslwnsrai sytgcvaqvf lfiflfaaey ylltvmsydr
      121 yiaickplhy gtllgsracv hmaaaawgag flnallhtan tfslplcqgn aveqffceip
      181 qilklscsqs ylrevgllvv slivtfvcfv fivvsyvqif ravlripseq grhkafsmcl
      241 phlavvslfv saamftylkp pssssssldl vvtllyavvp palnpliysm rnteikhavw
      301 klitgsfsea vkspssa
//
LOCUS       XP_053911519             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911519
VERSION     XP_053911519.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055544.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527754) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=35282
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850587"
                     /coded_by="XM_054055544.1:91..1047"
                     /db_xref="GeneID:128850587"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gfifttitcd hhlhtpmyff
       61 llnlsvldlg fisttlpkam vnslwdkrti sysgcvaqvf lfiffftaey slltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flyallhtan tfslplcqgn avdqffceip
      181 qilklscshs dlrevglldv svclffgcfv fivvsyvqif ravlripsdq grhkafsmcl
      241 phlavvslfi staafaylkp psissppldl vvsvlysvvp palnpliysl rnqqlkdavw
      301 klitgwfsea mncsspss
//
LOCUS       XP_053911520             285 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase Topors-like [Cuculus canorus].
ACCESSION   XP_053911520
VERSION     XP_053911520.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055545.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527754) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 7% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..285
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..285
                     /product="E3 ubiquitin-protein ligase Topors-like"
                     /calculated_mol_wt=31337
     Region          <39..161
                     /region_name="PRK04537"
                     /note="ATP-dependent RNA helicase RhlB; Provisional"
                     /db_xref="CDD:235307"
     Region          158..205
                     /region_name="RING_Ubox"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; cl17238"
                     /db_xref="CDD:473075"
     Site            order(159,162,175,177,180,183,194,197)
                     /site_type="other"
                     /note="cross-brace motif"
                     /db_xref="CDD:438111"
     CDS             1..285
                     /gene="LOC128850588"
                     /coded_by="XM_054055545.1:1..858"
                     /db_xref="GeneID:128850588"
ORIGIN      
        1 mthcgytdql rlckmplslr hvlgcavpaa vgllgcwwiy srikkrrvcp eqratgprte
       61 qqeevagees spepaagvpq rlprlleeer petenaggfs apcqpqaava pralqlaaae
      121 dsasgtdgas aerssavrdg grsqrpqagp veaaegsqcp iclqgvtnat yvayclhsfc
      181 fgciqrwatm sntcpvcrqp lerllisgqa ddmdeelvls psnhvcrwtl mgrpcrrfpq
      241 qryylrrrit srsqspagrd aatdtlnecv sellqslrfy lrrlq
//
LOCUS       XP_009558283             310 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: olfactory receptor 14A16 [Cuculus canorus].
ACCESSION   XP_009558283
VERSION     XP_009558283.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009559988.2
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527754) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009558283.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..310
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..310
                     /product="LOW QUALITY PROTEIN: olfactory receptor 14A16"
                     /calculated_mol_wt=34510
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..310
                     /gene="LOC104058464"
                     /coded_by="XM_009559988.2:1..933"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /db_xref="GeneID:104058464"
ORIGIN      
        1 msnsssitqf lllaftdtre lqllhfwlfl giylaallgn gliiitivcd yhfytpmyff
       61 llnlsvldlg sisttvpkam snflwntrai syqgcvaqvf lfifllgaey flltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flnallhtan tfslplcqgn aveqffceip
      181 qilklscshs flgedglldv saclffgffv fivvsyvqif ravlripskq grhkafstcl
      241 phlavvslfl stgmfanlkp psifspsldl vvsvlysvvp palnpliysl rnqqlkdavw
      301 klmsgffkhr
//
LOCUS       XP_053911521             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911521
VERSION     XP_053911521.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055546.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527754) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=35152
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850589"
                     /coded_by="XM_054055546.1:16..972"
                     /db_xref="GeneID:128850589"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 llnlslldlg sisttlpksm anslwdtrti sylgcvtqvf lfiffftaey slltvmsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flyallhtan tfslplcqgn avdqffceip
      181 qilklscsda alrevgflvf svflsfgcfv fivvsyvqif rsvlripseq grhkafstcl
      241 phlavvslfi stgmfaylkp psvsspsldi vlsflysvvp palnpliysl rnqqlkdavw
      301 klisgwfsea mncssssa
//
LOCUS       XP_053911522             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911522
VERSION     XP_053911522.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055547.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527754) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=34903
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC104054238"
                     /coded_by="XM_054055547.1:156..1112"
                     /db_xref="GeneID:104054238"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn glifttiacd hhlhtpmyff
       61 llnlsvldlg sisttvpksm anslwdtrti sysgcasqvf llaffisaef slltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flnallytan tfslplcqgn aveqffceip
      181 qilklscshs yvrdvalidv iaclclgcfv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvslfi stagfahlkp psissppldl lvsflysvvp palnpliysl rnqqlkdavw
      301 klitgwfsea mncsspss
//
LOCUS       XP_053911523             220 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein-like [Cuculus canorus].
ACCESSION   XP_053911523
VERSION     XP_053911523.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055548.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527755) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..220
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..220
                     /product="hydrocephalus-inducing protein-like"
                     /calculated_mol_wt=24400
     CDS             1..220
                     /gene="LOC128850590"
                     /coded_by="XM_054055548.1:92..754"
                     /db_xref="GeneID:128850590"
ORIGIN      
        1 mlrffatfth ssssensasr sarpayvfav qfqasgvhgc fecgcswhcd sisercrneg
       61 lssptketsh rwfcaqvdkc vpgnvqkvks krrvftalps sgalspgqrc nvrvrfspte
      121 eksydsilki nisqssrslq lqvsghglep qlefsptvle lgpllpcscg vegtvvvknp
      181 cnfpiefysl efdreyleee qvevqmcpss rrsvwrpsta
//
LOCUS       XP_053911524             429 aa            linear   VRT 09-MAR-2023
DEFINITION  germinal-center associated nuclear protein-like [Cuculus canorus].
ACCESSION   XP_053911524
VERSION     XP_053911524.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055549.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527756) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 15% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..429
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..429
                     /product="germinal-center associated nuclear protein-like"
                     /calculated_mol_wt=48644
     Region          <22..425
                     /region_name="MCM3AP_GANP"
                     /note="MCM3AP domain of GANP; pfam16769"
                     /db_xref="CDD:465265"
     CDS             1..429
                     /gene="LOC128850591"
                     /coded_by="XM_054055549.1:1..1290"
                     /db_xref="GeneID:128850591"
ORIGIN      
        1 mnpsppnhsp cplnpplvll giskavgwlv sqypnclelc sqmiqeyved giacefgtrf
       61 yrdwkerrsa glpsqepgvi ielynsvlqf lsdvassehl cdlswpitef sepggnkllp
      121 hlhwnmpdhl awlkkavlff qipyldlppl gapwrpvchm ilqyasrias ssstrplils
      181 qvenllskty qkwedntsgn sdedgpsvdd ipwdailaac idhklrdwkp pelpiapeav
      241 sddgqirvyf feehlknftl pfaweqarlr tqeeiwqghe rsrikrpkss kkpysiskms
      301 gqcgydvsvl sgqqksltsa geftetasdk elfparllar lqmerresrr feeqlhrcla
      361 edmeplgafi glplylsavs redckrlmke psptlsdrlk hlqqllrakk eaeaaselhl
      421 sapvdmvni
//
LOCUS       XP_053911525             513 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 36-like [Cuculus canorus].
ACCESSION   XP_053911525
VERSION     XP_053911525.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055550.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527756) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 27% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..513
                     /product="ubiquitin carboxyl-terminal hydrolase 36-like"
                     /calculated_mol_wt=57422
     Region          212..512
                     /region_name="Peptidase_C19E"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02661"
                     /db_xref="CDD:239126"
     Site            order(217,222,473,490)
                     /site_type="active"
                     /db_xref="CDD:239126"
     CDS             1..513
                     /gene="LOC128850592"
                     /coded_by="XM_054055550.1:1..1542"
                     /db_xref="GeneID:128850592"
ORIGIN      
        1 mpppvnprsa lypsrkaerg dtgrvrcrra pvrsgdtcae rrrrgsvsva gqdgtaprrq
       61 grggagreal gdrggdrmgr pggagegers gplpwprdaa rrsgtlwrpp rpldrplrsp
      121 qppgsaiaie eqrkdckdgr klhqelatpf qapqqkkmem eptkhsaseq lnrlqgsehv
      181 pgiqsdgipa pkkvlfpver lslkwqrthp igaglqnlgn tcflnstvqc ltytpplany
      241 llsrehsrtc qrgefcmlct mekhvlqvfs ssgsaiqpta fvrnikkiat hirlgrqeda
      301 heflsftina mqracldgct qldqqsqttt lvhqifggfl rsrvmcrvcn wpsdtyepfl
      361 dlaveieeae sieqalklfv rpemlceena ymcnkcqtkv qaikrfsihr assvlivslk
      421 rfsifsgdki kkdvtypevl dirpylseak gdpmnyelya vlvhsgysch sghyycyvka
      481 sdgqwyqmnd atvglttikv vlnqqayvlf ylr
//
LOCUS       XP_053911526             434 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein phosphatase 1 regulatory subunit 10-like
            [Cuculus canorus].
ACCESSION   XP_053911526
VERSION     XP_053911526.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055551.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527756) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..434
                     /product="serine/threonine-protein phosphatase 1
                     regulatory subunit 10-like"
                     /calculated_mol_wt=47989
     Region          74..146
                     /region_name="TFS2N"
                     /note="Domain in the N-terminus of transcription
                     elongation factor S-II (and elsewhere); smart00509"
                     /db_xref="CDD:197766"
     Region          <179..>361
                     /region_name="PRK07003"
                     /note="DNA polymerase III subunit gamma/tau"
                     /db_xref="CDD:235906"
     CDS             1..434
                     /gene="LOC128850593"
                     /coded_by="XM_054055551.1:27..1331"
                     /db_xref="GeneID:128850593"
ORIGIN      
        1 mgsgpidpke llkgldcflg hdgevknmds iskifnlmkd aqklvsrciy lnilmqtqsq
       61 dilakfirig gykllntwlt aakasnnvaf lqqilltlqh lpltvdhlkq nntakqvkrl
      121 skshdneelr qlaailvsdw mgvirsqssv qpaerdrkrr reetksktvv qekpqetkae
      181 akaeevpekk rekpkslrtt apshakfrst glemetpssa pakkmssasg adkyglkpmp
      241 ikrqnvsvls geaapakkky kplntapnaa keikvktipp qpmeglgfld alnsapvpvi
      301 kikkkkkvls ptatkpspfe gkppikatsa kpsspepsaa vevmeterpg tpvpavevpe
      361 pmefclaess mdirsmgnqp lesgpmakka rkkkrvswae egklckyfyf ewdetergep
      421 rafpppchlr giwg
//
LOCUS       XP_053911527             897 aa            linear   VRT 09-MAR-2023
DEFINITION  scavenger receptor cysteine-rich type 1 protein M130-like isoform
            X1 [Cuculus canorus].
ACCESSION   XP_053911527
VERSION     XP_053911527.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055552.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527757) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..897
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..897
                     /product="scavenger receptor cysteine-rich type 1 protein
                     M130-like isoform X1"
                     /calculated_mol_wt=95667
     Region          27..127
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          137..230
                     /region_name="SRCR"
                     /note="Scavenger receptor cysteine-rich domain; pfam00530"
                     /db_xref="CDD:459844"
     Region          236..335
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          348..443
                     /region_name="SRCR"
                     /note="Scavenger receptor cysteine-rich domain; pfam00530"
                     /db_xref="CDD:459844"
     Region          449..549
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          559..647
                     /region_name="SRCR"
                     /note="Scavenger receptor cysteine-rich domain; pfam00530"
                     /db_xref="CDD:459844"
     Region          680..780
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     CDS             1..897
                     /gene="LOC128850595"
                     /coded_by="XM_054055552.1:92..2785"
                     /db_xref="GeneID:128850595"
ORIGIN      
        1 mgmkgllspp vlwlllwvqp crgaaevrle ngsgrcagrv evkhegqwgt vcddlwdmad
       61 aavvckqlsc gaalgahnya hfgqgsgpiw mtdvwcfgte salsdcrhng wginycshge
      121 dagvtcsgfv qlvgrhspcs ghvlihdgdq wktvcdsdfg pkaaavvcre lrcgvvlsvh
      181 gaahieesid alwdrelqcv gneshlascp rgpptdqlcs hgraagvtct qftgfrlvng
      241 stacdgrvev qvhetwgtlc asswdlsdah vlcrhlncgf aeslprgehf gggtspiwrd
      301 sfhcdgteah lgqcpvttlg vslcshenia avicsgpprs aslrlvgges rcdgrveifq
      361 hgtwsrvldd qwdeqeasvv crqlqcgeae gaynppkper gtgpvglrrv rctghedslt
      421 lcntsvpesa laagvaedvg vvcrgsrrvr langqgrcag rveiyhqgsw gtvcddgwdl
      481 pdatvvcrql gcggaveasd sarfgegsgq iwldgvscsg aegalwdcpv eawgqhdcgh
      541 kedagvicse fvalrlenst gcsghlqvly ngtwgsvcst smtskevsla ckelgcgdrg
      601 fldtkrisdt lsnvtwldhv ecgerhssfw qclsdpwdtq scndprdeth iscngmrpev
      661 lpalgtecps stsctdreki raiggkdkcs grvevwhrgs wgtvcddswd mrdaevacrq
      721 lgcgpavsal geaafgegtg piwleqvecq gtepslqdcw aqagdrrlcr hkehaavkcs
      781 aapttaappp radptqallt ssgrlslpvi iciilgallc lllallvghv rgaraerrgf
      841 drawepfsea vyeeigyspv wekqagfsgs ggctsltggt fgglspwsqp glthcsp
//
LOCUS       XP_053911528             896 aa            linear   VRT 09-MAR-2023
DEFINITION  scavenger receptor cysteine-rich type 1 protein M130-like isoform
            X2 [Cuculus canorus].
ACCESSION   XP_053911528
VERSION     XP_053911528.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055553.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527757) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..896
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..896
                     /product="scavenger receptor cysteine-rich type 1 protein
                     M130-like isoform X2"
                     /calculated_mol_wt=95680
     Region          26..126
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          136..229
                     /region_name="SRCR"
                     /note="Scavenger receptor cysteine-rich domain; pfam00530"
                     /db_xref="CDD:459844"
     Region          235..334
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          347..442
                     /region_name="SRCR"
                     /note="Scavenger receptor cysteine-rich domain; pfam00530"
                     /db_xref="CDD:459844"
     Region          448..548
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          558..646
                     /region_name="SRCR"
                     /note="Scavenger receptor cysteine-rich domain; pfam00530"
                     /db_xref="CDD:459844"
     Region          679..779
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     CDS             1..896
                     /gene="LOC128850595"
                     /coded_by="XM_054055553.1:63..2753"
                     /db_xref="GeneID:128850595"
ORIGIN      
        1 mdlmpplpwr greiksshpc awaaevrlen gsgrcagrve vkhegqwgtv cddlwdmada
       61 avvckqlscg aalgahnyah fgqgsgpiwm tdvwcfgtes alsdcrhngw ginycshged
      121 agvtcsgfvq lvgrhspcsg hvlihdgdqw ktvcdsdfgp kaaavvcrel rcgvvlsvhg
      181 aahieesida lwdrelqcvg neshlascpr gpptdqlcsh graagvtctq ftgfrlvngs
      241 tacdgrvevq vhetwgtlca sswdlsdahv lcrhlncgfa eslprgehfg ggtspiwrds
      301 fhcdgteahl gqcpvttlgv slcsheniaa vicsgpprsa slrlvggesr cdgrveifqh
      361 gtwsrvlddq wdeqeasvvc rqlqcgeaeg aynppkperg tgpvglrrvr ctghedsltl
      421 cntsvpesal aagvaedvgv vcrgsrrvrl angqgrcagr veiyhqgswg tvcddgwdlp
      481 datvvcrqlg cggaveasds arfgegsgqi wldgvscsga egalwdcpve awgqhdcghk
      541 edagvicsef valrlenstg csghlqvlyn gtwgsvcsts mtskevslac kelgcgdrgf
      601 ldtkrisdtl snvtwldhve cgerhssfwq clsdpwdtqs cndprdethi scngmrpevl
      661 palgtecpss tsctdrekir aiggkdkcsg rvevwhrgsw gtvcddswdm rdaevacrql
      721 gcgpavsalg eaafgegtgp iwleqvecqg tepslqdcwa qagdrrlcrh kehaavkcsa
      781 apttaapppr adptqallts sgrlslpvii ciilgallcl llallvghvr garaerrgfd
      841 rawepfseav yeeigyspvw ekqagfsgsg gctsltggtf gglspwsqpg lthcsp
//
LOCUS       XP_053911529             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911529
VERSION     XP_053911529.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055554.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527757) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=35138
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850596"
                     /coded_by="XM_054055554.1:19..975"
                     /db_xref="GeneID:128850596"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 llnlslldlg sisttvpksm anslwdtrti sysgcvtqff lfiflftael ffltvmsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flnallhtan tfslplcqgn avdqffceip
      181 qilklscsda alreiwllvf salvgfgcfv fivvsyvqif rsvlripseq grhkafstcl
      241 phlavvslfi stgmfaylkp psvsspsldi vlsflysvvp palnpliysl rnqqlkdavw
      301 klitgwfsea mncssssa
//
LOCUS       XP_053911530             263 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase Topors-like [Cuculus canorus].
ACCESSION   XP_053911530
VERSION     XP_053911530.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055555.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527757) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..263
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..263
                     /product="E3 ubiquitin-protein ligase Topors-like"
                     /calculated_mol_wt=28825
     Region          <17..139
                     /region_name="PRK04537"
                     /note="ATP-dependent RNA helicase RhlB; Provisional"
                     /db_xref="CDD:235307"
     Region          136..185
                     /region_name="RING_Ubox"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; cl17238"
                     /db_xref="CDD:473075"
     Site            order(137,140,153,155,158,161,172,175)
                     /site_type="other"
                     /note="cross-brace motif"
                     /db_xref="CDD:438111"
     CDS             1..263
                     /gene="LOC128850597"
                     /coded_by="XM_054055555.1:24..815"
                     /db_xref="GeneID:128850597"
ORIGIN      
        1 mgcavpaavg llgcwwiysr ikkrrvcpeq ratgprteqq eevageessp epaagvpqrl
       61 prlleeerpe tenaggfsap cqpqaavapr alqlaaaeds asgtdgasge rssavrdggr
      121 sqrpqagpve aaegsqcpic lqgvtnatyv ayclhsfcfg ciqrwatmrn tcpvcrqple
      181 rllisgqadd mdeelvlsps nhvcrwtlmg rpcrrfpqqr yylrrritsr sqspagrdaa
      241 tdtlnecvse llqslrfylr rlq
//
LOCUS       XP_053911531             305 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911531
VERSION     XP_053911531.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055556.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527757) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=33712
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..305
                     /gene="LOC128850598"
                     /coded_by="XM_054055556.1:1..918"
                     /db_xref="GeneID:128850598"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittitcd hhlhtpmyff
       61 llnlsvldlg sisttvpksm anslwdtrai sylgcatqif fffscataef ylltvmsydr
      121 yvaickplhy gtllgsracv hmaaaawgaa flnallhtan tfslslcqgn vvdqffceip
      181 qilklsclds dlkedgllvv taffgfgcfv fivvsyvqif ravlripseq gqhkafsmcl
      241 phlavvslfl stsffaylkp qsisspsldl vvtvlyslvp pvvnpliysl rnqelkdalk
      301 klcnc
//
LOCUS       XP_053911533             443 aa            linear   VRT 09-MAR-2023
DEFINITION  cell division cycle protein 20 homolog [Cuculus canorus].
ACCESSION   XP_053911533
VERSION     XP_053911533.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055558.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527757) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..443
                     /product="cell division cycle protein 20 homolog"
                     /calculated_mol_wt=48722
     Region          132..169
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <142..415
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          174..211
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          217..252
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          257..298
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          305..343
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          348..384
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..443
                     /gene="LOC128850599"
                     /coded_by="XM_054055558.1:331..1662"
                     /db_xref="GeneID:128850599"
ORIGIN      
        1 mwcgtagkeg srmqrtqriv gpdryipsrs aldmdvakfl ltrqkdpaev spakkerqra
       61 ravilngfdl eeakilglsg kaqstasgfq nnlkalyrhq vmpgsirrkg rcissaadri
      121 ldapdirddy yltlldwstq nllalaldtt vylwdhttge tinlmeteya agyvssvswg
      181 nggdclavgt sngevqlwdi krqkrlrtlt shvsrvgcls wnsyilssgs rsglihhhdv
      241 rvaehhvatl aghtrevcgl kwsldghyla sggddhvvnv wpsiqggrgg fapvqtfrqh
      301 qgavkavawc pwqssilatg ggasdkrirl wnvcsgscls nvdarsqvss ilwstnykel
      361 isghgenqlv iwkypamskv telrghtgrv lsmalspdge tvasvagdet lqlwrcfqmd
      421 pitkkekeka nrvissvlhq air
//
LOCUS       XP_053911534             443 aa            linear   VRT 09-MAR-2023
DEFINITION  cell division cycle protein 20 homolog [Cuculus canorus].
ACCESSION   XP_053911534
VERSION     XP_053911534.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055559.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527757) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..443
                     /product="cell division cycle protein 20 homolog"
                     /calculated_mol_wt=48722
     Region          132..169
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <142..415
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          174..211
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          217..252
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          257..298
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          305..343
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          348..384
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..443
                     /gene="LOC128850599"
                     /coded_by="XM_054055559.1:394..1725"
                     /db_xref="GeneID:128850599"
ORIGIN      
        1 mwcgtagkeg srmqrtqriv gpdryipsrs aldmdvakfl ltrqkdpaev spakkerqra
       61 ravilngfdl eeakilglsg kaqstasgfq nnlkalyrhq vmpgsirrkg rcissaadri
      121 ldapdirddy yltlldwstq nllalaldtt vylwdhttge tinlmeteya agyvssvswg
      181 nggdclavgt sngevqlwdi krqkrlrtlt shvsrvgcls wnsyilssgs rsglihhhdv
      241 rvaehhvatl aghtrevcgl kwsldghyla sggddhvvnv wpsiqggrgg fapvqtfrqh
      301 qgavkavawc pwqssilatg ggasdkrirl wnvcsgscls nvdarsqvss ilwstnykel
      361 isghgenqlv iwkypamskv telrghtgrv lsmalspdge tvasvagdet lqlwrcfqmd
      421 pitkkekeka nrvissvlhq air
//
LOCUS       XP_053911535             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911535
VERSION     XP_053911535.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055560.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527759) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=35005
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850600"
                     /coded_by="XM_054055560.1:16..972"
                     /db_xref="GeneID:128850600"
ORIGIN      
        1 msnsssitpf fllafadtre lqllhfwlfl giylaallgn gliittiacd hqlhtpmyff
       61 llnlslldlg sisttvpksm anslwdnrii shsgcvsqvf llvffisaey flltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flnallhtan tfslplcqgn aveqffceip
      181 qilklscsrs dlrevglldv sacllfgcfv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvslfv stgtfaylkp psgssppldl lvsvlysvvp palnpliysl rnqqlkdavw
      301 klitrwfska mncsspsa
//
LOCUS       XP_053911536             203 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14J1-like [Cuculus canorus].
ACCESSION   XP_053911536
VERSION     XP_053911536.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055561.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527760) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 7% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..203
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..203
                     /product="olfactory receptor 14J1-like"
                     /calculated_mol_wt=22067
     Region          <1..177
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          26..42
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          79..102
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          121..143
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          152..177
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..203
                     /gene="LOC128850601"
                     /coded_by="XM_054055561.1:1..612"
                     /db_xref="GeneID:128850601"
ORIGIN      
        1 msydryvaic kplhygtllg sracvhmaaa awgagfltal lhtantfslp lcqgnaveqf
       61 fceipqilkl scshsdlrev glldvsacll fgcfvfivvs yvqifravlr ipseqgrhka
      121 fstclphlav vslfvstgtf aylkppsnss tsldlvvsvl ysvvppalnp liyslrnqql
      181 kdavwklitg wfseamncsl ssv
//
LOCUS       XP_053911537             335 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911537
VERSION     XP_053911537.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055562.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527760) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..335
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..335
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=36971
     Region          40..309
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          41..67
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          74..100
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(96,99..100,112..117,119..120,123,168,170..174,210,
                     213..215,217..219,221..222,267,270..271,273..274,277,
                     283..284,286..288,291,294..295)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          112..142
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          154..175
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          210..240
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          247..277
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          284..309
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..335
                     /gene="LOC128850602"
                     /coded_by="XM_054055562.1:4..1011"
                     /db_xref="GeneID:128850602"
ORIGIN      
        1 mslsfppvtv phaqrqqmsn sssitqflll afadtrelql lhfwlflgiy laallgngli
       61 fttiacdhhl htpmyfflln lsvldlgsis ttvpksmans lwdnrtisys gcasqvflfa
      121 ffisaefsll timsydryva ickplhygtl lgsracvhma aaawgagfly allhtantfs
      181 lplcqgnave qffceipqil klscshsyir evglldfsac lffgcfvfiv vsyvqifrav
      241 lripsdqgrh kafsmclphl avvslfvstg ifaylkppsv ssppldlvvs vlysvvppal
      301 npliyslrnq qlkdavwkli tgwfseamnc sspsa
//
LOCUS       XP_053911538             305 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14J1-like [Cuculus canorus].
ACCESSION   XP_053911538
VERSION     XP_053911538.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055563.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527760) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="olfactory receptor 14J1-like"
                     /calculated_mol_wt=33454
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..305
                     /gene="LOC128850603"
                     /coded_by="XM_054055563.1:25..942"
                     /db_xref="GeneID:128850603"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 llnlsildlg sisttvpksm anslwdnrai sysgcvaqlf vfiffigaey clltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flnallhtan tfslplcqgn aveqffceip
      181 pilklscshs ylreagisvf gaclvfgcfv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvslfl stagfaylkp psisspsldl vvsflysvvp palnpliysl rnqqlkdavw
      301 kqisg
//
LOCUS       XP_053911539             335 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911539
VERSION     XP_053911539.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055564.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527760) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..335
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..335
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=36923
     Region          40..309
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          41..67
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          74..100
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(96,99..100,112..117,119..120,123,168,170..174,210,
                     213..215,217..219,221..222,267,270..271,273..274,277,
                     283..284,286..288,291,294..295)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          112..142
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          154..175
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          210..240
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          247..277
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          284..309
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..335
                     /gene="LOC128850604"
                     /coded_by="XM_054055564.1:1..1008"
                     /db_xref="GeneID:128850604"
ORIGIN      
        1 mslsfppvtv phvqrqqmsn sssitqflll afadtrelql lhfwlflgiy laallgngli
       61 ittiacdhhl htpmyfflln lsvldlgsis ttvpksmans lwdnrtisys ecvaqfflfa
      121 ffisaeysll timsydryva ickplhygtl lgsracvhma aaawgagflh allhtantfs
      181 lplcqgnave qffceipqil klscshsdlk evglldasgc lyfgcfvfiv vsyvqifrav
      241 mripseqgrh kafstclphl avvslfvsta afaylkppsi ssppldivvs vlysvvppal
      301 npliyslrnq qlkdavrkli tgrfseamnc ssrsa
//
LOCUS       XP_053911541             307 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911541
VERSION     XP_053911541.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055566.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527760) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..307
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..307
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=34017
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..307
                     /gene="LOC128850605"
                     /coded_by="XM_054055566.1:82..1005"
                     /db_xref="GeneID:128850605"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn glifttiacd hhlhtpmyff
       61 llnlsvldmg sisttvpksm anslwdnrti sytgcisqvf lfaffisaey flltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgtg flnallhtan tfslplcqgn avhqffceip
      181 hilklscsda alrefgllvl svflsfgcfv fivvsyvqif rsvlripseq gqhkafstcl
      241 phlavvslfi stsffaylkp ptisspsldl vmavlysvvp palnpliysl rnqqlkdavw
      301 klmsgsf
//
LOCUS       XP_053911542             369 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850606 [Cuculus canorus].
ACCESSION   XP_053911542
VERSION     XP_053911542.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055567.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527761) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..369
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..369
                     /product="uncharacterized protein LOC128850606"
                     /calculated_mol_wt=39288
     CDS             1..369
                     /gene="LOC128850606"
                     /coded_by="XM_054055567.1:44..1153"
                     /db_xref="GeneID:128850606"
ORIGIN      
        1 mftffahani varvmalcrv eggptyeval sgeaslinsv ldnaeidygl qvphaclgrs
       61 petitgsgcg vctaaepgas gmsappdkph dilksyaesl lrtqpeewrk fegneeaaat
      121 ldeffqqpdv qelvlgrdpt gqlqatthfp ptleskavyf vkkkrekitp enfqsgvmvg
      181 dispspveql itmmeerghs lldtqaells avpdllerli fycwfwmlpp smarpgllqa
      241 pgplsrrlgt ggkaggrvtl adgeeavgge valgvvaelq rlwrtaappa gpllsrgvsp
      301 ggarlplaae lgagrfehgv ldvapfhgaa rpvaaagaal ksmragrprr grwwrfsflp
      361 graapplpg
//
LOCUS       XP_053911543             334 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier organic anion transporter family member 4C1-like
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053911543
VERSION     XP_053911543.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055568.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527761) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..334
                     /product="solute carrier organic anion transporter family
                     member 4C1-like isoform X1"
                     /calculated_mol_wt=35802
     Region          <12..334
                     /region_name="MFS"
                     /note="Major Facilitator Superfamily; cl28910"
                     /db_xref="CDD:475125"
     Site            order(12,14..16,19,39,42..43,46,162,165..166,169..171,174,
                     203,207,248..249,253,257,314,317..318,321..322,325)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:349949"
     CDS             1..334
                     /gene="LOC128850607"
                     /coded_by="XM_054055568.1:231..1235"
                     /db_xref="GeneID:128850607"
ORIGIN      
        1 mlgqlllgag gtplytlgta fiddsvpkhk sslyigtgya msllgpaigf vlggqllniy
       61 idiqipestk ldqddprwlg awwipflacs faiwlliipf lcfpkhlpgt tkiqaeeise
      121 thndgsaala enqnigksfk dfpvallill knpvlmslii asssealvat gfatflpkfi
      181 enqfgetssf satlgglvlv paaalgqiis gilvskckmd cksiikfmmg tcsvallcns
      241 lvlfakcgne pfagvsetyn gtgvlyglta pcnadcrclr smsypicgrd evqnfspcfa
      301 gcashlfnnm kktyhncsci gnpkrksdse dffl
//
LOCUS       XP_053911544             334 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier organic anion transporter family member 4C1-like
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053911544
VERSION     XP_053911544.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055569.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527761) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..334
                     /product="solute carrier organic anion transporter family
                     member 4C1-like isoform X1"
                     /calculated_mol_wt=35802
     Region          <12..334
                     /region_name="MFS"
                     /note="Major Facilitator Superfamily; cl28910"
                     /db_xref="CDD:475125"
     Site            order(12,14..16,19,39,42..43,46,162,165..166,169..171,174,
                     203,207,248..249,253,257,314,317..318,321..322,325)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:349949"
     CDS             1..334
                     /gene="LOC128850607"
                     /coded_by="XM_054055569.1:231..1235"
                     /db_xref="GeneID:128850607"
ORIGIN      
        1 mlgqlllgag gtplytlgta fiddsvpkhk sslyigtgya msllgpaigf vlggqllniy
       61 idiqipestk ldqddprwlg awwipflacs faiwlliipf lcfpkhlpgt tkiqaeeise
      121 thndgsaala enqnigksfk dfpvallill knpvlmslii asssealvat gfatflpkfi
      181 enqfgetssf satlgglvlv paaalgqiis gilvskckmd cksiikfmmg tcsvallcns
      241 lvlfakcgne pfagvsetyn gtgvlyglta pcnadcrclr smsypicgrd evqnfspcfa
      301 gcashlfnnm kktyhncsci gnpkrksdse dffl
//
LOCUS       XP_053911545             334 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier organic anion transporter family member 4C1-like
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053911545
VERSION     XP_053911545.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055570.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527761) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..334
                     /product="solute carrier organic anion transporter family
                     member 4C1-like isoform X1"
                     /calculated_mol_wt=35802
     Region          <12..334
                     /region_name="MFS"
                     /note="Major Facilitator Superfamily; cl28910"
                     /db_xref="CDD:475125"
     Site            order(12,14..16,19,39,42..43,46,162,165..166,169..171,174,
                     203,207,248..249,253,257,314,317..318,321..322,325)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:349949"
     CDS             1..334
                     /gene="LOC128850607"
                     /coded_by="XM_054055570.1:231..1235"
                     /db_xref="GeneID:128850607"
ORIGIN      
        1 mlgqlllgag gtplytlgta fiddsvpkhk sslyigtgya msllgpaigf vlggqllniy
       61 idiqipestk ldqddprwlg awwipflacs faiwlliipf lcfpkhlpgt tkiqaeeise
      121 thndgsaala enqnigksfk dfpvallill knpvlmslii asssealvat gfatflpkfi
      181 enqfgetssf satlgglvlv paaalgqiis gilvskckmd cksiikfmmg tcsvallcns
      241 lvlfakcgne pfagvsetyn gtgvlyglta pcnadcrclr smsypicgrd evqnfspcfa
      301 gcashlfnnm kktyhncsci gnpkrksdse dffl
//
LOCUS       XP_053911546             316 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier organic anion transporter family member 4C1-like
            isoform X2 [Cuculus canorus].
ACCESSION   XP_053911546
VERSION     XP_053911546.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055571.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527761) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..316
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..316
                     /product="solute carrier organic anion transporter family
                     member 4C1-like isoform X2"
                     /calculated_mol_wt=33688
     Region          <12..313
                     /region_name="MFS"
                     /note="Major Facilitator Superfamily; cl28910"
                     /db_xref="CDD:475125"
     CDS             1..316
                     /gene="LOC128850607"
                     /coded_by="XM_054055571.1:231..1181"
                     /db_xref="GeneID:128850607"
ORIGIN      
        1 mlgqlllgag gtplytlgta fiddsvpkhk sslyigtgya msllgpaigf vlggqllniy
       61 idiqipestk ldqddprwlg awwipflacs faiwlliipf lcfpkhlpgt tkiqaeeise
      121 thndgsaala enqnigksfk dfpvallill knpvlmslii asssealvat gfatflpkfi
      181 enqfgetssf satlgglvlv paaalgqiis gilvskckmd cksiikfmmg tcsvallcns
      241 lvlfakcgne pfagvsetyn gtgvlyglta pcnadcrclr smsypicgrd evqnfspcfa
      301 gcashlfnnm kkvcar
//
LOCUS       XP_053911547             316 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier organic anion transporter family member 4C1-like
            isoform X2 [Cuculus canorus].
ACCESSION   XP_053911547
VERSION     XP_053911547.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055572.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527761) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..316
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..316
                     /product="solute carrier organic anion transporter family
                     member 4C1-like isoform X2"
                     /calculated_mol_wt=33688
     Region          <12..313
                     /region_name="MFS"
                     /note="Major Facilitator Superfamily; cl28910"
                     /db_xref="CDD:475125"
     CDS             1..316
                     /gene="LOC128850607"
                     /coded_by="XM_054055572.1:231..1181"
                     /db_xref="GeneID:128850607"
ORIGIN      
        1 mlgqlllgag gtplytlgta fiddsvpkhk sslyigtgya msllgpaigf vlggqllniy
       61 idiqipestk ldqddprwlg awwipflacs faiwlliipf lcfpkhlpgt tkiqaeeise
      121 thndgsaala enqnigksfk dfpvallill knpvlmslii asssealvat gfatflpkfi
      181 enqfgetssf satlgglvlv paaalgqiis gilvskckmd cksiikfmmg tcsvallcns
      241 lvlfakcgne pfagvsetyn gtgvlyglta pcnadcrclr smsypicgrd evqnfspcfa
      301 gcashlfnnm kkvcar
//
LOCUS       XP_053911548             316 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier organic anion transporter family member 4C1-like
            isoform X2 [Cuculus canorus].
ACCESSION   XP_053911548
VERSION     XP_053911548.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055573.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527761) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..316
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..316
                     /product="solute carrier organic anion transporter family
                     member 4C1-like isoform X2"
                     /calculated_mol_wt=33688
     Region          <12..313
                     /region_name="MFS"
                     /note="Major Facilitator Superfamily; cl28910"
                     /db_xref="CDD:475125"
     CDS             1..316
                     /gene="LOC128850607"
                     /coded_by="XM_054055573.1:231..1181"
                     /db_xref="GeneID:128850607"
ORIGIN      
        1 mlgqlllgag gtplytlgta fiddsvpkhk sslyigtgya msllgpaigf vlggqllniy
       61 idiqipestk ldqddprwlg awwipflacs faiwlliipf lcfpkhlpgt tkiqaeeise
      121 thndgsaala enqnigksfk dfpvallill knpvlmslii asssealvat gfatflpkfi
      181 enqfgetssf satlgglvlv paaalgqiis gilvskckmd cksiikfmmg tcsvallcns
      241 lvlfakcgne pfagvsetyn gtgvlyglta pcnadcrclr smsypicgrd evqnfspcfa
      301 gcashlfnnm kkvcar
//
LOCUS       XP_053911550             275 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein homolog isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053911550
VERSION     XP_053911550.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055575.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527761) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..275
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..275
                     /product="hydrocephalus-inducing protein homolog isoform
                     X3"
                     /calculated_mol_wt=31659
     CDS             1..275
                     /gene="LOC128850607"
                     /coded_by="XM_054055575.1:69..896"
                     /db_xref="GeneID:128850607"
ORIGIN      
        1 mwdlmelqct vqkrlpglgt vgdrvmatgk irqpvghskr pdgfqsrvat slnrklvraa
       61 ekpltvntry gqhtpsalmk kslsteqrlv ttrevkrpri tqlrdmseas hhkfsavdlq
      121 rslfqpfple vvfqsyvphk vyemplilrn nnkvprlvkv mmetsphfkl vshnvvwhrv
      181 apgmtstfri lftpeenkdy fhqltciter ekfivpirai garavldfpd qlhfsvcpvn
      241 ystqktllir nvgnqearyr isterhvsns rskly
//
LOCUS       XP_053911551             224 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein homolog [Cuculus canorus].
ACCESSION   XP_053911551
VERSION     XP_053911551.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055576.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527761) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..224
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..224
                     /product="hydrocephalus-inducing protein homolog"
                     /calculated_mol_wt=24657
     CDS             1..224
                     /gene="LOC128850608"
                     /coded_by="XM_054055576.1:808..1482"
                     /db_xref="GeneID:128850608"
ORIGIN      
        1 mkdelrsphg gralsictfy aithcgfiiq wlklfmslqp vkleageech lsirfnpace
       61 egltsrevek vlkiqflghp heeqvsvrre vyfpslciqt taldfgciln dteavrytem
      121 sncspipvry rwlfltdgpa sqtrfsppas qcfitpqppq eniaqsegsa saesssreea
      181 aeepakglga agdalqkpad andfefmvae qgrfpvqanl itss
//
LOCUS       XP_053911552             186 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein homolog isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053911552
VERSION     XP_053911552.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055577.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527761) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..186
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..186
                     /product="hydrocephalus-inducing protein homolog isoform
                     X1"
                     /calculated_mol_wt=20543
     CDS             1..186
                     /gene="LOC128850609"
                     /coded_by="XM_054055577.1:854..1414"
                     /db_xref="GeneID:128850609"
ORIGIN      
        1 malcrveggp tyeialirda slinclldvt eidyglqqps dvvtlqykpl slknicplpl
       61 svflaleepf lichadgsps lqmfrtelpe yvldfghvih gsihthvvki intgrfpvsf
      121 ctgrrvlrst gfrvepdhvk dlpccetesf tvhfdlesan lplgevdvll pikqkaprit
      181 stsmpt
//
LOCUS       XP_053911553             185 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein homolog isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053911553
VERSION     XP_053911553.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055578.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527761) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..185
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..185
                     /product="hydrocephalus-inducing protein homolog isoform
                     X2"
                     /calculated_mol_wt=20415
     CDS             1..185
                     /gene="LOC128850609"
                     /coded_by="XM_054055578.1:853..1410"
                     /db_xref="GeneID:128850609"
ORIGIN      
        1 malcrveggp tyeialirda slinclldvt eidyglqqps dvvtlqykpl slknicplpl
       61 svflaleepf lichadgsps lqmfrtelpe yvldfghvih gsihthvvki intgrfpvsf
      121 ctgrrvlrst gfrvepdhvk dlpccetesf tvhfdlesan lplgevdvll pikkaprits
      181 tsmpt
//
LOCUS       XP_053911554             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911554
VERSION     XP_053911554.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055579.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527763) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 3% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=35088
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850611"
                     /coded_by="XM_054055579.1:25..981"
                     /db_xref="GeneID:128850611"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl ciylaallgn gliittiacd hhlhtpmyff
       61 llnlsvldlg sisttvpksm anslwdnrni sysgcisqvf lfaffisaef slltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flhallhtan tfslplcqgn aveqffceip
      181 qilklscsrs direvglldv svclffgcfv fivvsyvqif rvvlripseq grqkafsmcl
      241 phlavvslfi stagfaylkp psisstlldl vvsvlysvvs salnpliysl rnqqlkdavw
      301 klitgwfset incsspsa
//
LOCUS       XP_053911555             317 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14J1-like [Cuculus canorus].
ACCESSION   XP_053911555
VERSION     XP_053911555.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055580.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527763) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..317
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..317
                     /product="olfactory receptor 14J1-like"
                     /calculated_mol_wt=35147
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..317
                     /gene="LOC128850612"
                     /coded_by="XM_054055580.1:46..999"
                     /db_xref="GeneID:128850612"
ORIGIN      
        1 msnsssitqf lllaftdtre lqllhfwlfl giylaallgn glifttiacd hrlhtpmyff
       61 llnlsvldlg sisttvpksm anslwdnrni sysecvsqvf lfaffisaef filtimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flnallhtan tfslplcqgn aveqffceip
      181 qilklscshs yvrevglldv svclffgcfv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvslfv stagfaylkp lstsspaldi mfsvlysvvp palnpliysl rnqqlrdavw
      301 klitgwfska mscssps
//
LOCUS       XP_053911556             305 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911556
VERSION     XP_053911556.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055581.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527763) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=33687
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..305
                     /gene="LOC128850613"
                     /coded_by="XM_054055581.1:7..924"
                     /db_xref="GeneID:128850613"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittiacd hhlhtamyff
       61 llnlslldlg sistivpksm anslwgkrai syagclaqvf lymffisaef slltimsydr
      121 yiaickplhy gtllgsracv hmaaaawgaa flnallhtan tfslplcqgn avdqffceip
      181 hilklscshs yiwefgllti svfvafgcfv fivvsyvhif ravlripseq grhkafstcl
      241 phlavvslfi stgvfaylkp psisspsldl vvsfqysvvp palnpliysl rnqqlkdavw
      301 klipg
//
LOCUS       XP_053911557             256 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein-like [Cuculus canorus].
ACCESSION   XP_053911557
VERSION     XP_053911557.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055582.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527764) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..256
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..256
                     /product="hydrocephalus-inducing protein-like"
                     /calculated_mol_wt=27698
     CDS             1..256
                     /gene="LOC128850614"
                     /coded_by="XM_054055582.1:1..771"
                     /db_xref="GeneID:128850614"
ORIGIN      
        1 medteetgsl qrrqftqaep vsvgieevfn ilplhgvllp gesqrvmftf fghanivagv
       61 malcrveggp tyevalsgea slinsvldsa eidyglqgfn kvgeaevtlr nsgkvgftya
      121 vlspsvatag cprpreplvl pstgyvgagk eqalkvyylp gvpggfcrtf qvqvghlepe
      181 eislkgegsf prislelprn ikgnekyekv lkvakekmeq dsqrdeavvl getvaaetar
      241 apcwslvcrc rwsrcc
//
LOCUS       XP_053911558             189 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein-like isoform X1 [Cuculus canorus].
ACCESSION   XP_053911558
VERSION     XP_053911558.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055583.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527764) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..189
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..189
                     /product="hydrocephalus-inducing protein-like isoform X1"
                     /calculated_mol_wt=19926
     CDS             1..189
                     /gene="LOC128850615"
                     /coded_by="XM_054055583.1:440..1009"
                     /db_xref="GeneID:128850615"
ORIGIN      
        1 megteetgsl qrrqftqaep vsvgieevfn ilplhgvllp gesqrvmftf fghanivagv
       61 malcrveggp tyevalsgea slinyvldna eidyglqgfn kvgeaevtlr nsgkvgftya
      121 vlspsvatag cprpreplvl pstvsveeeq vlkpglmsrc pggaigkkmg kqtgkekens
      181 qevvgeags
//
LOCUS       XP_053911560             188 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein-like isoform X2 [Cuculus canorus].
ACCESSION   XP_053911560
VERSION     XP_053911560.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055585.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527764) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..188
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..188
                     /product="hydrocephalus-inducing protein-like isoform X2"
                     /calculated_mol_wt=20045
     CDS             1..188
                     /gene="LOC128850615"
                     /coded_by="XM_054055585.1:440..1006"
                     /db_xref="GeneID:128850615"
ORIGIN      
        1 megteetgsl qrrqftqaep vsvgieevfn ilplhgvllp gesqrvmftf fghanivagv
       61 malcrveggp tyevalsgea slinyvldna eidyglqgfn kvgeaevtlr nsgkvgftya
      121 vlspsvatag cprpreplvl pstgyvgagk eealkvllpa rstwwllqdf pgpsgspgar
      181 rdllkrrg
//
LOCUS       XP_053911561             194 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911561
VERSION     XP_053911561.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055586.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527765) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 5% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..194
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..194
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=21180
     Region          <1..177
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          26..42
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          79..102
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          121..143
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          152..177
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..194
                     /gene="LOC128850617"
                     /coded_by="XM_054055586.1:1..585"
                     /db_xref="GeneID:128850617"
ORIGIN      
        1 msydryiaic kplhygtllg sracvhmaaa awgagflndl lhtantfslp lcqgnavdqf
       61 fceiphilql scsqsylrev gllvvgvcls lgcfvfivvs yvqifravlr ipseqgrhka
      121 fsmclphlav vslivstgli aylkppstsc psldlvvsfl yavvppavnp liyslrnqef
      181 kdalgklphr tlfh
//
LOCUS       XP_053911562             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911562
VERSION     XP_053911562.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055587.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527765) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=34746
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850618"
                     /coded_by="XM_054055587.1:1..957"
                     /db_xref="GeneID:128850618"
ORIGIN      
        1 msnsssitqf lllafadtrq lqllhfwlfl giylaallgn gliiiavacd hclhtpmyff
       61 lfnlslldlg sistivpksm anslwdtrai syagcasqvf lflffisael flltvmsydr
      121 yvaickplhy gtllgsracv hmaaaawgag fltallhtan tfslplcqgn avdqffceip
      181 qilklscscs ylreagiivl saclvfgcfv fivvsyvqif rsvlripseq grhkafstcl
      241 phlavvslfi smavfvhlks pyisspspdl ligvlysvvp pavnpliysm rnqqlkgavw
      301 klitgcfpkq inspgssa
//
LOCUS       XP_053911563             311 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911563
VERSION     XP_053911563.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055588.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527765) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..311
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..311
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=34347
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..311
                     /gene="LOC128850619"
                     /coded_by="XM_054055588.1:25..960"
                     /db_xref="GeneID:128850619"
ORIGIN      
        1 msnsssitqf lllaftdtre lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 llnlsildvg fisttvpksm anslwdnrai syrgcvvqlf vlfffistei tlltvmsydr
      121 yvaickplhy gtllgsracv hvaaaawgag flnallhtan tfslplcqgn avdqffceip
      181 qilklscsqs ylrevgllvv gvclsfgcfv fivvsyvqif ravlripseq grhkafsmcl
      241 phlavvsliv stgliaylkp pstscpsldl vvsllyavvp pavnpliysl rnqefkdavg
      301 klpqrtlfhr q
//
LOCUS       XP_053911564             286 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase Topors-like [Cuculus canorus].
ACCESSION   XP_053911564
VERSION     XP_053911564.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055589.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527765) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..286
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..286
                     /product="E3 ubiquitin-protein ligase Topors-like"
                     /calculated_mol_wt=31460
     Region          <40..162
                     /region_name="PRK04537"
                     /note="ATP-dependent RNA helicase RhlB; Provisional"
                     /db_xref="CDD:235307"
     Region          159..206
                     /region_name="RING_Ubox"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; cl17238"
                     /db_xref="CDD:473075"
     Site            order(160,163,176,178,181,184,195,198)
                     /site_type="other"
                     /note="cross-brace motif"
                     /db_xref="CDD:438111"
     CDS             1..286
                     /gene="LOC128850621"
                     /coded_by="XM_054055589.1:62..922"
                     /db_xref="GeneID:128850621"
ORIGIN      
        1 mvsvspsrdq lrlckmplsl rhvmgcavpa avgllgcwwi ysrikkrrvc peqratgprt
       61 eqqeevagee sspepaagvp qrlprlleee rpetenaggf sapcqpqaav apralqlaaa
      121 edsasgtdga sgerssavrd ggrsqrpqag pveaaegsqc piclqgvtna tyvayclhsf
      181 cfgciqrwat mrntcpvcrq plerllisgq addmdeelvl spsnhvcrwt lmgrpcrrfp
      241 qqryylrrri tsrsqspagr daatdtlnec vsellqslrf ylrrlq
//
LOCUS       XP_053911565             490 aa            linear   VRT 09-MAR-2023
DEFINITION  trichohyalin-like isoform X1 [Cuculus canorus].
ACCESSION   XP_053911565
VERSION     XP_053911565.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055590.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527766) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..490
                     /product="trichohyalin-like isoform X1"
                     /calculated_mol_wt=56415
     Region          179..>490
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     CDS             1..490
                     /gene="LOC128850623"
                     /coded_by="XM_054055590.1:1147..2619"
                     /db_xref="GeneID:128850623"
ORIGIN      
        1 meqdnqrdqa vvlgeavaad pltdssdtml epwlqmqlee vlleehaleq qtalassaqe
       61 dsafdqhahw rlledqlrvc kthfcfrdvm ldaipaavgl lgccwiyshr kkqanghekk
      121 aigfkeeqqe elhkkdssle paagvsqslp lsseekhpdn epstsllatg smtlgsirek
      181 rreelemwek eltlkeahla qqneelkraw qdlqrdreel kqqkasfhld lenlrvlkee
      241 velekaqfkq vmeefkrdqe elqlqkvsfh ldqeglctai eefkrekekf rldmerfpet
      301 rlvpdhsqla gaeatgased nqgdftqeaa eelqarvaag eersyasthc qtcealqaql
      361 aemnnanthl aeenahlrrq malteevqae nahlksklah vevvenklvg rikmaewsqe
      421 lekereetks tvqrkseegr clqraqteeh rehkealqai qakltelngr flkhdeqcrq
      481 ffqeleqlek
//
LOCUS       XP_053911566             490 aa            linear   VRT 09-MAR-2023
DEFINITION  trichohyalin-like isoform X1 [Cuculus canorus].
ACCESSION   XP_053911566
VERSION     XP_053911566.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055591.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527766) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..490
                     /product="trichohyalin-like isoform X1"
                     /calculated_mol_wt=56415
     Region          179..>490
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     CDS             1..490
                     /gene="LOC128850623"
                     /coded_by="XM_054055591.1:1098..2570"
                     /db_xref="GeneID:128850623"
ORIGIN      
        1 meqdnqrdqa vvlgeavaad pltdssdtml epwlqmqlee vlleehaleq qtalassaqe
       61 dsafdqhahw rlledqlrvc kthfcfrdvm ldaipaavgl lgccwiyshr kkqanghekk
      121 aigfkeeqqe elhkkdssle paagvsqslp lsseekhpdn epstsllatg smtlgsirek
      181 rreelemwek eltlkeahla qqneelkraw qdlqrdreel kqqkasfhld lenlrvlkee
      241 velekaqfkq vmeefkrdqe elqlqkvsfh ldqeglctai eefkrekekf rldmerfpet
      301 rlvpdhsqla gaeatgased nqgdftqeaa eelqarvaag eersyasthc qtcealqaql
      361 aemnnanthl aeenahlrrq malteevqae nahlksklah vevvenklvg rikmaewsqe
      421 lekereetks tvqrkseegr clqraqteeh rehkealqai qakltelngr flkhdeqcrq
      481 ffqeleqlek
//
LOCUS       XP_053911567             490 aa            linear   VRT 09-MAR-2023
DEFINITION  trichohyalin-like isoform X1 [Cuculus canorus].
ACCESSION   XP_053911567
VERSION     XP_053911567.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055592.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527766) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..490
                     /product="trichohyalin-like isoform X1"
                     /calculated_mol_wt=56415
     Region          179..>490
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     CDS             1..490
                     /gene="LOC128850623"
                     /coded_by="XM_054055592.1:1507..2979"
                     /db_xref="GeneID:128850623"
ORIGIN      
        1 meqdnqrdqa vvlgeavaad pltdssdtml epwlqmqlee vlleehaleq qtalassaqe
       61 dsafdqhahw rlledqlrvc kthfcfrdvm ldaipaavgl lgccwiyshr kkqanghekk
      121 aigfkeeqqe elhkkdssle paagvsqslp lsseekhpdn epstsllatg smtlgsirek
      181 rreelemwek eltlkeahla qqneelkraw qdlqrdreel kqqkasfhld lenlrvlkee
      241 velekaqfkq vmeefkrdqe elqlqkvsfh ldqeglctai eefkrekekf rldmerfpet
      301 rlvpdhsqla gaeatgased nqgdftqeaa eelqarvaag eersyasthc qtcealqaql
      361 aemnnanthl aeenahlrrq malteevqae nahlksklah vevvenklvg rikmaewsqe
      421 lekereetks tvqrkseegr clqraqteeh rehkealqai qakltelngr flkhdeqcrq
      481 ffqeleqlek
//
LOCUS       XP_053911568             490 aa            linear   VRT 09-MAR-2023
DEFINITION  trichohyalin-like isoform X1 [Cuculus canorus].
ACCESSION   XP_053911568
VERSION     XP_053911568.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055593.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527766) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..490
                     /product="trichohyalin-like isoform X1"
                     /calculated_mol_wt=56415
     Region          179..>490
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     CDS             1..490
                     /gene="LOC128850623"
                     /coded_by="XM_054055593.1:1458..2930"
                     /db_xref="GeneID:128850623"
ORIGIN      
        1 meqdnqrdqa vvlgeavaad pltdssdtml epwlqmqlee vlleehaleq qtalassaqe
       61 dsafdqhahw rlledqlrvc kthfcfrdvm ldaipaavgl lgccwiyshr kkqanghekk
      121 aigfkeeqqe elhkkdssle paagvsqslp lsseekhpdn epstsllatg smtlgsirek
      181 rreelemwek eltlkeahla qqneelkraw qdlqrdreel kqqkasfhld lenlrvlkee
      241 velekaqfkq vmeefkrdqe elqlqkvsfh ldqeglctai eefkrekekf rldmerfpet
      301 rlvpdhsqla gaeatgased nqgdftqeaa eelqarvaag eersyasthc qtcealqaql
      361 aemnnanthl aeenahlrrq malteevqae nahlksklah vevvenklvg rikmaewsqe
      421 lekereetks tvqrkseegr clqraqteeh rehkealqai qakltelngr flkhdeqcrq
      481 ffqeleqlek
//
LOCUS       XP_053911569             490 aa            linear   VRT 09-MAR-2023
DEFINITION  trichohyalin-like isoform X1 [Cuculus canorus].
ACCESSION   XP_053911569
VERSION     XP_053911569.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055594.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527766) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..490
                     /product="trichohyalin-like isoform X1"
                     /calculated_mol_wt=56415
     Region          179..>490
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     CDS             1..490
                     /gene="LOC128850623"
                     /coded_by="XM_054055594.1:1954..3426"
                     /db_xref="GeneID:128850623"
ORIGIN      
        1 meqdnqrdqa vvlgeavaad pltdssdtml epwlqmqlee vlleehaleq qtalassaqe
       61 dsafdqhahw rlledqlrvc kthfcfrdvm ldaipaavgl lgccwiyshr kkqanghekk
      121 aigfkeeqqe elhkkdssle paagvsqslp lsseekhpdn epstsllatg smtlgsirek
      181 rreelemwek eltlkeahla qqneelkraw qdlqrdreel kqqkasfhld lenlrvlkee
      241 velekaqfkq vmeefkrdqe elqlqkvsfh ldqeglctai eefkrekekf rldmerfpet
      301 rlvpdhsqla gaeatgased nqgdftqeaa eelqarvaag eersyasthc qtcealqaql
      361 aemnnanthl aeenahlrrq malteevqae nahlksklah vevvenklvg rikmaewsqe
      421 lekereetks tvqrkseegr clqraqteeh rehkealqai qakltelngr flkhdeqcrq
      481 ffqeleqlek
//
LOCUS       XP_053911570             490 aa            linear   VRT 09-MAR-2023
DEFINITION  trichohyalin-like isoform X1 [Cuculus canorus].
ACCESSION   XP_053911570
VERSION     XP_053911570.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055595.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527766) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..490
                     /product="trichohyalin-like isoform X1"
                     /calculated_mol_wt=56415
     Region          179..>490
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     CDS             1..490
                     /gene="LOC128850623"
                     /coded_by="XM_054055595.1:2092..3564"
                     /db_xref="GeneID:128850623"
ORIGIN      
        1 meqdnqrdqa vvlgeavaad pltdssdtml epwlqmqlee vlleehaleq qtalassaqe
       61 dsafdqhahw rlledqlrvc kthfcfrdvm ldaipaavgl lgccwiyshr kkqanghekk
      121 aigfkeeqqe elhkkdssle paagvsqslp lsseekhpdn epstsllatg smtlgsirek
      181 rreelemwek eltlkeahla qqneelkraw qdlqrdreel kqqkasfhld lenlrvlkee
      241 velekaqfkq vmeefkrdqe elqlqkvsfh ldqeglctai eefkrekekf rldmerfpet
      301 rlvpdhsqla gaeatgased nqgdftqeaa eelqarvaag eersyasthc qtcealqaql
      361 aemnnanthl aeenahlrrq malteevqae nahlksklah vevvenklvg rikmaewsqe
      421 lekereetks tvqrkseegr clqraqteeh rehkealqai qakltelngr flkhdeqcrq
      481 ffqeleqlek
//
LOCUS       XP_053911571             490 aa            linear   VRT 09-MAR-2023
DEFINITION  trichohyalin-like isoform X1 [Cuculus canorus].
ACCESSION   XP_053911571
VERSION     XP_053911571.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055596.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527766) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..490
                     /product="trichohyalin-like isoform X1"
                     /calculated_mol_wt=56415
     Region          179..>490
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     CDS             1..490
                     /gene="LOC128850623"
                     /coded_by="XM_054055596.1:1322..2794"
                     /db_xref="GeneID:128850623"
ORIGIN      
        1 meqdnqrdqa vvlgeavaad pltdssdtml epwlqmqlee vlleehaleq qtalassaqe
       61 dsafdqhahw rlledqlrvc kthfcfrdvm ldaipaavgl lgccwiyshr kkqanghekk
      121 aigfkeeqqe elhkkdssle paagvsqslp lsseekhpdn epstsllatg smtlgsirek
      181 rreelemwek eltlkeahla qqneelkraw qdlqrdreel kqqkasfhld lenlrvlkee
      241 velekaqfkq vmeefkrdqe elqlqkvsfh ldqeglctai eefkrekekf rldmerfpet
      301 rlvpdhsqla gaeatgased nqgdftqeaa eelqarvaag eersyasthc qtcealqaql
      361 aemnnanthl aeenahlrrq malteevqae nahlksklah vevvenklvg rikmaewsqe
      421 lekereetks tvqrkseegr clqraqteeh rehkealqai qakltelngr flkhdeqcrq
      481 ffqeleqlek
//
LOCUS       XP_053911572             401 aa            linear   VRT 09-MAR-2023
DEFINITION  trichohyalin-like isoform X2 [Cuculus canorus].
ACCESSION   XP_053911572
VERSION     XP_053911572.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055597.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527766) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..401
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..401
                     /product="trichohyalin-like isoform X2"
                     /calculated_mol_wt=46223
     Region          90..>401
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     CDS             1..401
                     /gene="LOC128850623"
                     /coded_by="XM_054055597.1:954..2159"
                     /db_xref="GeneID:128850623"
ORIGIN      
        1 mldaipaavg llgccwiysh rkkqanghek kaigfkeeqq eelhkkdssl epaagvsqsl
       61 plsseekhpd nepstsllat gsmtlgsire krreelemwe keltlkeahl aqqneelkra
      121 wqdlqrdree lkqqkasfhl dlenlrvlke evelekaqfk qvmeefkrdq eelqlqkvsf
      181 hldqeglcta ieefkrekek frldmerfpe trlvpdhsql agaeatgase dnqgdftqea
      241 aeelqarvaa geersyasth cqtcealqaq laemnnanth laeenahlrr qmalteevqa
      301 enahlkskla hvevvenklv grikmaewsq elekereetk stvqrkseeg rclqraqtee
      361 hrehkealqa iqakltelng rflkhdeqcr qffqeleqle k
//
LOCUS       XP_053911573             401 aa            linear   VRT 09-MAR-2023
DEFINITION  trichohyalin-like isoform X2 [Cuculus canorus].
ACCESSION   XP_053911573
VERSION     XP_053911573.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055598.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527766) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..401
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..401
                     /product="trichohyalin-like isoform X2"
                     /calculated_mol_wt=46223
     Region          90..>401
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     CDS             1..401
                     /gene="LOC128850623"
                     /coded_by="XM_054055598.1:936..2141"
                     /db_xref="GeneID:128850623"
ORIGIN      
        1 mldaipaavg llgccwiysh rkkqanghek kaigfkeeqq eelhkkdssl epaagvsqsl
       61 plsseekhpd nepstsllat gsmtlgsire krreelemwe keltlkeahl aqqneelkra
      121 wqdlqrdree lkqqkasfhl dlenlrvlke evelekaqfk qvmeefkrdq eelqlqkvsf
      181 hldqeglcta ieefkrekek frldmerfpe trlvpdhsql agaeatgase dnqgdftqea
      241 aeelqarvaa geersyasth cqtcealqaq laemnnanth laeenahlrr qmalteevqa
      301 enahlkskla hvevvenklv grikmaewsq elekereetk stvqrkseeg rclqraqtee
      361 hrehkealqa iqakltelng rflkhdeqcr qffqeleqle k
//
LOCUS       XP_009569996             307 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: olfactory receptor 14J1 [Cuculus canorus].
ACCESSION   XP_009569996
VERSION     XP_009569996.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009571701.2
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527767) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009569996.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 1% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..307
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..307
                     /product="LOW QUALITY PROTEIN: olfactory receptor 14J1"
                     /calculated_mol_wt=33687
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..307
                     /gene="LOC104068777"
                     /coded_by="XM_009571701.2:1..924"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /db_xref="GeneID:104068777"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 llnlsildlg sisttvpksm anslwdirti sysgcvaqvf lfvfllgadf alltvmsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flnallhtan tfslplcqgn avdqffceip
      181 hilklscsda alrevgfxvf svflafvcfv fivvsyvqif rsvlripseq grhkafstcl
      241 phlavvslfi stsffaylkp ptisspsldl vmavlysvvp palnpliysl rnqqlkdavw
      301 klmsgsf
//
LOCUS       XP_053911574             311 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911574
VERSION     XP_053911574.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055599.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527767) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..311
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..311
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=34601
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..311
                     /gene="LOC128850625"
                     /coded_by="XM_054055599.1:1..936"
                     /db_xref="GeneID:128850625"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 llnlsildlg sisttvpktm anslwnirti sytgcvaqvf lyvffisaey wlltvmsydr
      121 yvaickplhy gtllgsracv hmaaaawgag fltallhtan tfslslcqgn avdqffceip
      181 qilklscsdf ylrevgllvv svfvafvcfv fivvsyvqif rsvlripseq grhkafstcl
      241 phlavvslfi stgafaylkp ssvsspsldi vvsflysvvp palnpliysl rnqqlkdavt
      301 qdylfhdfpr h
//
LOCUS       XP_053911575             307 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911575
VERSION     XP_053911575.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055600.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527767) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..307
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..307
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=33937
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..307
                     /gene="LOC128850626"
                     /coded_by="XM_054055600.1:1..924"
                     /db_xref="GeneID:128850626"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl gtylaaflgn gliittiacd hhlhtpmylf
       61 ilnlsfldlg sisttvpksm anslwhirti sysgcvaqvf llvfflgaef alltvmsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flnallhtan tfslplcqgn avdqffceip
      181 hilklscsda alrevgflvf ivflsfvcfv fivvsyvqif rsvlripseq grhkafstcl
      241 phlavvslfi smsffaylkp ptisspsldl vvsflysvvp palnpliysl rnqqlkdavc
      301 klmsdsf
//
LOCUS       XP_053911576             166 aa            linear   VRT 09-MAR-2023
DEFINITION  epoxide hydrolase 1-like [Cuculus canorus].
ACCESSION   XP_053911576
VERSION     XP_053911576.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055601.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527768) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 5% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..166
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..166
                     /product="epoxide hydrolase 1-like"
                     /calculated_mol_wt=18321
     CDS             1..166
                     /gene="LOC128850627"
                     /coded_by="XM_054055601.1:792..1292"
                     /db_xref="GeneID:128850627"
ORIGIN      
        1 mkglllniif vssqglrrii svmlgahvpw pggltredaq hrypfiqniy dllrefgylq
       61 iqatkadtag nepsldhyeq silttlpsts ikdavnsvks srdgayiprg iaafpqepah
      121 ppcawakets knlltysymp rgghfaasee pellaqdith fvrkeg
//
LOCUS       XP_053911577             162 aa            linear   VRT 09-MAR-2023
DEFINITION  protein ELYS-like [Cuculus canorus].
ACCESSION   XP_053911577
VERSION     XP_053911577.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055602.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527768) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..162
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..162
                     /product="protein ELYS-like"
                     /calculated_mol_wt=18062
     Region          2..>125
                     /region_name="ELYS-bb"
                     /note="beta-propeller of ELYS nucleoporin; pfam16687"
                     /db_xref="CDD:465233"
     CDS             1..162
                     /gene="LOC128850628"
                     /coded_by="XM_054055602.1:315..803"
                     /db_xref="GeneID:128850628"
ORIGIN      
        1 mrdlraqvms sllrfpkgtl qalvkhevtq gsvlrrkfsg gisdlaqlar aphleivnsv
       61 tgqrlsayyf rgaheqppti rvvkeflwek rtglmialee gegsvlclyd letstvvkav
      121 vlparsyrtv sqetaslecg vvqyisydts ykmvmkmsdd me
//
LOCUS       XP_053911578             162 aa            linear   VRT 09-MAR-2023
DEFINITION  protein ELYS-like [Cuculus canorus].
ACCESSION   XP_053911578
VERSION     XP_053911578.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055603.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527768) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..162
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..162
                     /product="protein ELYS-like"
                     /calculated_mol_wt=18231
     Region          2..>125
                     /region_name="ELYS-bb"
                     /note="beta-propeller of ELYS nucleoporin; pfam16687"
                     /db_xref="CDD:465233"
     CDS             1..162
                     /gene="LOC128850630"
                     /coded_by="XM_054055603.1:1885..2373"
                     /db_xref="GeneID:128850630"
ORIGIN      
        1 mrdlraqvts sllrfpegtl qalvkhevtq gsvlrrkfsg rlsdlaqlar aphleivnlv
       61 tgqrlsayyf rgaheqppti rvvkeflwek rtglmialee gegsvlclyd letsrvvkav
      121 vlparsyrtt sqetsslecg vvqyisydtn ykmvmtmsdd me
//
LOCUS       XP_053911579             305 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911579
VERSION     XP_053911579.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055604.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527769) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=33618
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..305
                     /gene="LOC128850631"
                     /coded_by="XM_054055604.1:1..918"
                     /db_xref="GeneID:128850631"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 ilnlsvldlg sisttvpkat tnslwdtrai syegcasqvf lflffisaey slltvmsydr
      121 yvaickplhy gtllgsracv hmaaaawgag fltallhtan tfslplcqgn avdqffseip
      181 qilklscsdv alrevgllvv gvflsfgcfi fivvsyvqif rsvlripseq rrhkafstcl
      241 phlavvslfi stgmfaylkp ssvsspsldi vvsflysvvp pslnpfiysl rnqqlknavw
      301 klilg
//
LOCUS       XP_053911580             238 aa            linear   VRT 09-MAR-2023
DEFINITION  antigen WC1.1-like [Cuculus canorus].
ACCESSION   XP_053911580
VERSION     XP_053911580.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055605.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527769) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 3% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..238
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..238
                     /product="antigen WC1.1-like"
                     /calculated_mol_wt=25192
     CDS             1..238
                     /gene="LOC128850632"
                     /coded_by="XM_054055605.1:1..717"
                     /db_xref="GeneID:128850632"
ORIGIN      
        1 mhdptqalrt ssgrlslpvi icivlgallc lllallvghv rgaraerrgf drawepfsea
       61 vyeeigyspv wekqagfsgs gshsegslpe lqphprdske eedgpgsapg dladsyddar
      121 eipdpgqdpe sgqgdwetar epeegpeprd apggaklhsq ssagapgaeg dawclspest
      181 nyddaeemsl ahpledtktg pqelsaeqfp shgpgepipa iglgsgrree rtvqlgel
//
LOCUS       XP_053911581            1501 aa            linear   VRT 09-MAR-2023
DEFINITION  deleted in malignant brain tumors 1 protein-like [Cuculus canorus].
ACCESSION   XP_053911581
VERSION     XP_053911581.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055606.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527769) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 24% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1501
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1501
                     /product="deleted in malignant brain tumors 1
                     protein-like"
                     /calculated_mol_wt=160234
     Region          27..127
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          137..230
                     /region_name="SRCR"
                     /note="Scavenger receptor cysteine-rich domain; pfam00530"
                     /db_xref="CDD:459844"
     Region          236..335
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          348..443
                     /region_name="SRCR"
                     /note="Scavenger receptor cysteine-rich domain; pfam00530"
                     /db_xref="CDD:459844"
     Region          449..549
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          558..662
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          935..1035
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          1048..1143
                     /region_name="SRCR"
                     /note="Scavenger receptor cysteine-rich domain; pfam00530"
                     /db_xref="CDD:459844"
     Region          1149..1249
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          1259..1348
                     /region_name="SRCR"
                     /note="Scavenger receptor cysteine-rich domain; pfam00530"
                     /db_xref="CDD:459844"
     Region          1380..1480
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     CDS             1..1501
                     /gene="LOC128850634"
                     /coded_by="XM_054055606.1:66..4571"
                     /db_xref="GeneID:128850634"
ORIGIN      
        1 mgmkgllspp vlwlllwvqp crgaaevrle ngsgrcagrv evkhegqwgt vcddlwdmad
       61 aavvckqlsc gaalgahnya hfgqgsgpiw mtdvwcfgte salsdcrhng wginrcshre
      121 dagvtcsgfv qlvgrhspcs ghmlihdgdq wktvcdsdfg pkaaavvcre lrcgvvlsvh
      181 gaahieesid alwdrelqcv gneshlascp rgpptdqlcs hgraagvtct qftgfrlvng
      241 stacdgrvev qvhetwgtlc asswdlsdah vlcrhlncgf aeslprgehf gggtspiwrd
      301 sfhcdgteah lgqcpvttlg vslcshenia avicsgpprs aslrlvgges rcdgrveifq
      361 hgtwsrvldd qwdeqeasvv crqlqcgeae gaynppkper gtgpvglrrv rctghedslt
      421 lcntsvpesa laagvaedvg vvcrgsrrvr langqgrcag rveiyhqgsw gtvcddgwdl
      481 pdatvvcrql gcggaveasd sarfgegsgq iwldgvscsg aegalwdcpv eawgqhdcgh
      541 kedagvicsd rekihaiggk dkcsgrvevw hrgswgtvcg gswgtvcdds wdmrdaevac
      601 rqlgcgpavs algeaafgeg tgpiwleqve cqgtepslqd cwaqagdrrl crhkehtavn
      661 csaasttaaq ppradptqal ltssgrlslp viicivlgal lclllallvg hvrgaraerr
      721 gfdrtwepfs eavyeeigys pvwekqagfs gsgshsegsl pelqphprns keeedgpgsa
      781 pgdpadsydd areipdlgqd pesgqgdwkt agepeegpep rdapgaaaps tvgldqrqgl
      841 fplrpdtdpi psqlhgshss gaaghaplgw vgicrsitls sslsprvprs cdrerdpsgl
      901 fqhgrrlrtg mkgvlsppvl wlllwvqpcr gaaevrleng sgrcagrvev khegqwgtvc
      961 ddlwdmadaa vvckqlgcgv alkthnyayf gqgsgriwma dvrcdgtesa lsdcrhngwg
     1021 rnscshgeda gvtcsgpprs aslrlvgges rcdgrveifq hgtwsrvldd qwdeqeasvv
     1081 crqlqcgeae gaynppkper gtgpvglrrv rctghedslt lcntsvpesa laagvaedvg
     1141 vvcrgsrrvr langqgrcag rveiyhqgsw gtvcddgwdl pdatvvcrql gcggaveasd
     1201 sarfgegsgq iwldgvscsg aegalwdcpv eawgqhdcgh kedagvicse fvalrlenst
     1261 gcsghlqvly ngtwgsvcst smtskevsla ckelgcgdrg fldtqgtsdt lsgvtwldhv
     1321 ecgerhssfw qclsdpwdtq scndprdvth iscngmqpev lpalgtecps stsctdreki
     1381 raiggkdkcs grvevwhrgs wgtvcddswd mrdaevacrq lgcgpavsal geaafgegmg
     1441 piwleqvecq gtepslqdcw aqagdrrfcr hkedaavncs gewrgqesfa gywqgvgvqs
     1501 s
//
LOCUS       XP_053911582            1131 aa            linear   VRT 09-MAR-2023
DEFINITION  speckle targeted PIP5K1A-regulated poly(A) polymerase [Cuculus
            canorus].
ACCESSION   XP_053911582
VERSION     XP_053911582.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055607.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527770) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 6% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1131
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1131
                     /product="speckle targeted PIP5K1A-regulated poly(A)
                     polymerase"
                     /calculated_mol_wt=121098
     Region          62..86
                     /region_name="zf-met"
                     /note="Zinc-finger of C2H2 type; pfam12874"
                     /db_xref="CDD:463736"
     Region          100..173
                     /region_name="RRM_TUT1"
                     /note="RNA recognition motif (RRM) found in speckle
                     targeted PIP5K1A-regulated poly(A) polymerase (Star-PAP)
                     and similar proteins; cd12279"
                     /db_xref="CDD:409721"
     Region          318..441
                     /region_name="NT_PAP_TUTase"
                     /note="Nucleotidyltransferase (NT) domain of poly(A)
                     polymerases and terminal uridylyl transferases; cd05402"
                     /db_xref="CDD:143392"
     Region          325..>602
                     /region_name="TRF4"
                     /note="DNA polymerase sigma [Replication, recombination
                     and repair]; COG5260"
                     /db_xref="CDD:227585"
     Site            order(333..335,345..346,348,406..407,409,411,422,429..430,
                     433..434)
                     /site_type="active"
                     /db_xref="CDD:143392"
     Site            order(333,406,409,411,422,429..430)
                     /site_type="active"
                     /note="putative primer-binding pocket [active]"
                     /db_xref="CDD:143392"
     Site            order(346,348,422)
                     /site_type="metal-binding"
                     /note="metal binding triad [ion binding]"
                     /db_xref="CDD:143392"
     Region          <686..915
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     CDS             1..1131
                     /gene="TUT1"
                     /coded_by="XM_054055607.1:42..3437"
                     /db_xref="GeneID:128850636"
ORIGIN      
        1 mdedivtang dtvtgnemde stgsgngdtv tgtnedtgag ngdtgtdpvs dpdvetlprg
       61 gfrcrlcqis vanppslash lrgrkhgrlr llradrraqe qrslfvsgfa rgtsgaelsr
      121 hfeaygavaa vvmdkekgay aivelqepsg reralaepqh hlnghrlrvr preektfayg
      181 tpgrgprrep lasrsletal cqaadclegl evllrvwggs lqalleefwg ldvllrvfee
      241 vlralpggfg tfpgvsggle vllgflgwpc gfggvlglpr trvtrgaqvd aqmvkvvell
      301 elsegerrlr hlllalfqev fteffpgcsv vpfgssvngf dahgcdldlf ldleptkslh
      361 asgsaddsil gdidlaappe llelvatvlr rcvpgvrrvr avptarrpvv kfchkesela
      421 gdisvdnrla llntrflrlc aaadervrpl vyavrlwakr qglagnpsgs gallnnyalt
      481 llvlfflqtr tppvlpgvhg lrrsagdedc aevegwnrsf sdaasapers antqrpssll
      541 adffhtfgdf dfpgmlislr egralplpal pesfrelklg afnlqdpfel shnvaanvna
      601 rtasrfqrcc rdaakysrsl qfrrksgkgr iwgitrlfqp gavepgaaga gaflisipvd
      661 pglvgserpg lcsersgvgs ehpgvdsdhp svgsdhpgvg sehpgvdseh pgvgsehpgl
      721 csehsgvgse hpgvdsdhps vgsdhpgvgs ehpgvdsehp gvgsehpglc sehpgvgsdh
      781 pgvdserpgl csehpsvgse hpgvgsehpg vgserpgvgs ehpglgsehp gvgsehpgvg
      841 sehpgvgser pgvdsehsgi gsehsslgse hpglcserpg vgserpgvds ehpgvgsehp
      901 glcsahpgvv sehsgvsrip wfrnacsaia fvlkdilkcv fagkppspse esvlledsea
      961 sellrteaet pptpgskrcr petpntstlp ggkrprmsis eetanwecav whrvwtgrrr
     1021 frrqlrhrtg sdgnanpldl eqkvsetiir qegterppep llrfranars vrretrvllr
     1081 lipaspgplf qeffhflrnf lpaavrqrle rdlpeplrag mgflppgidl k
//
LOCUS       XP_053911583             557 aa            linear   VRT 09-MAR-2023
DEFINITION  TAF6-like RNA polymerase II p300/CBP-associated factor-associated
            factor 65 kDa subunit 6L, partial [Cuculus canorus].
ACCESSION   XP_053911583
VERSION     XP_053911583.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055608.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527770) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: incomplete on the amino end.
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         <1..557
                     /product="TAF6-like RNA polymerase II p300/CBP-associated
                     factor-associated factor 65 kDa subunit 6L"
     Region          82..296
                     /region_name="TAF6C"
                     /note="C-terminal domain of TATA Binding Protein (TBP)
                     Associated Factor 6 (TAF6); cd08050"
                     /db_xref="CDD:381749"
     Site            order(86..88,90..91,94,105..106,109,113,116..117,123)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:381749"
     Region          86..117
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:381749"
     Region          124..156
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:381749"
     Region          166..209
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:381749"
     Region          216..248
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:381749"
     Region          250..295
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:381749"
     CDS             1..557
                     /gene="TAF6L"
                     /coded_by="XM_054055608.1:<1..1674"
                     /db_xref="GeneID:104067822"
ORIGIN      
        1 algalvfrqa vcgcgsqdav pfrairegel yfqedrevnl velalatnip kgcaettvrv
       61 hvsyldgkgn lepqgsvpsa vstltdellk yyqhitravl gddphlmkva lqdlqsnski
      121 aallpyfvyv vsgvksvshd leqlsrllhi arsliqnpfl clgsyvrsli gsvlycalep
      181 laasinplnd hwtlrdyaam llsrifwthg dvvsglyqqi llslqkvlad pvrplcshyg
      241 avvglhalgw kaveqvlyph lptywanlqa vlddysvsna qvkadghkvy gailvaverl
      301 lkmkaqqapi pssgaaappp epsprhspnq dspseagigl grpllqlsag gsassssspv
      361 spvlslhamy relydffgds laarfgtafp paslplpgap egsrqepaaf gsegvarkmp
      421 qltanatvsp rgeesprggg ggggggdvvp sgravlhrps gvarprgipr qcghrpgtre
      481 vfqkcrftar gvpgfsfvia grqsgrrcqg rlfqtnfpqh hgsgyvsryv qklpmigrsa
      541 rparrwprae yslhlll
//
LOCUS       XP_053911584             504 aa            linear   VRT 09-MAR-2023
DEFINITION  metastasis-associated protein MTA2 [Cuculus canorus].
ACCESSION   XP_053911584
VERSION     XP_053911584.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055609.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527770) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..504
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..504
                     /product="metastasis-associated protein MTA2"
                     /calculated_mol_wt=55389
     Region          <1..25
                     /region_name="ELM2"
                     /note="ELM2 domain; pfam01448"
                     /db_xref="CDD:460214"
     Region          94..139
                     /region_name="SANT_MTA3_like"
                     /note="Myb-Like Dna-Binding Domain of MTA3 and related
                     proteins; cd11661"
                     /db_xref="CDD:212559"
     Site            order(95,125..126,128..129,131..133,135..137)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:212559"
     Region          190..240
                     /region_name="ZnF_GATA"
                     /note="zinc finger binding to DNA consensus sequence
                     [AT]GATA[AG]; smart00401"
                     /db_xref="CDD:214648"
     Region          276..351
                     /region_name="MTA_R1"
                     /note="MTA R1 domain; pfam17226"
                     /db_xref="CDD:465388"
     CDS             1..504
                     /gene="MTA2"
                     /coded_by="XM_054055609.1:145..1659"
                     /db_xref="GeneID:128850637"
ORIGIN      
        1 memkvwdpdn pltdrqidqf lvvaravgtf araldcsssi rqpslhmsaa aasrditlfh
       61 amdtlqrngy dlakamatlv pqggpvlcrd emeewsasea mlfeealeky gkdfndirqd
      121 flpwkslasi vqfyymwktt dryiqqkrlk aaeadsklkq vyiptytkpn pnqiisvgsk
      181 pgmngagfqk gltceschtt qsaqwyawgp pnmqcrlcas cwiywkkygg lktptqlega
      241 arsasephsr ghlsrpeaqs lspyttsasr akllaknrqt fllqttrltr larrlcrdvl
      301 qprraarrpy apinanaika ecsirlpkaa kaplkihplt rlplaaivke laaqaplkpk
      361 tprgtktpin rnqlsqsrgl aglvgkrgyd gggdghrppr vrvgaglpfs angrplaagl
      421 raapppgtkr qrlnpadapn pvvfvatkdt ralrkalthl elrraarrph lplklkaglp
      481 lrpggappap phpastsepi vled
//
LOCUS       XP_053911585             216 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 179B [Cuculus canorus].
ACCESSION   XP_053911585
VERSION     XP_053911585.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055610.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527770) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..216
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..216
                     /product="transmembrane protein 179B"
                     /calculated_mol_wt=23291
     CDS             1..216
                     /gene="TMEM179B"
                     /coded_by="XM_054055610.1:341..991"
                     /db_xref="GeneID:104067821"
ORIGIN      
        1 mavsalqlae lglhgaaflc givcasaltv aqgefggfcl lygtvswtgt alspksfssv
       61 slcsfvsavs vvvalysfsa llygvygscv eeprgdrawl svallmafiv lffllvaasi
      121 lrvgmnalca smvetkalvs cqeaerkpwv sysptrfysn lysaqasawv nvflwclltv
      181 rlwwrrrrrs eevpsqllrs tdaeseglfg grpigp
//
LOCUS       XP_053911586             782 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 36-like
            [Cuculus canorus].
ACCESSION   XP_053911586
VERSION     XP_053911586.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055611.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527771) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 47% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..782
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..782
                     /product="LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
                     hydrolase 36-like"
                     /calculated_mol_wt=85704
     Region          2..>131
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     Region          215..515
                     /region_name="Peptidase_C19E"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02661"
                     /db_xref="CDD:239126"
     Site            order(220,225,476,493)
                     /site_type="active"
                     /db_xref="CDD:239126"
     CDS             1..782
                     /gene="LOC128850641"
                     /coded_by="XM_054055611.1:1..2349"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon"
                     /db_xref="GeneID:128850641"
ORIGIN      
        1 mpppvsprsa pvppreaerg dtgrvrwrrs plrsgdtcae rrrrgsvsva grsgtagtap
       61 rrqgrggagr ealgdrggdr mgrpggageg ersgplpwpr daaprsgtlw rpprpldrpl
      121 rspqppgsai aieeqlefgk dgrelhqela tpfqapqqkk meveptehst seelnrlqgs
      181 ehvpwmqgdg iplpkkvlfp verlsmqwqr thqigaglkn lgntcflnst vqcltytppl
      241 anyllsrehs rtcqqgefcm lctmekhilq vfsssgsaiq ptsfvrnikk iathirlgrq
      301 edaheflsft inamqracld gcteldqqsq tttlvhqifg gflrsrvmck acnwpsdtye
      361 pfldlaveie eaesieqalk lfvrpemlce enaymcdkck tkvqaikrfs ihrslqffiv
      421 slkrfsifsg gkikkevtyp evldirpyls edkgdpmnyd lyavlvhsgy scrsghyycy
      481 vkasdgqwyq mndavvcltn lkvvlnqqay vlfyvrtpgt sksfeepiae avsiapsqpv
      541 mgqkpetqpa nklsgqeevg vsvpcrtcst gpklptsskl lqelrkylsa vpgvkppape
      601 gsrraklkrs llavsaveqs sstsppaakk lalsaekgst peavsrddrc tqlqlqlpeq
      661 mhptdtthpd stsqpsgkls tsssalkvln aekpplkiii klsalgdlss vlkkrhhrad
      721 gspqsqsvng eddtsspprk ksctpgnsvs itgeeagksa sggqkepgcq rtssselklp
      781 np
//
LOCUS       XP_053911587             247 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850642 [Cuculus canorus].
ACCESSION   XP_053911587
VERSION     XP_053911587.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055612.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527772) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..247
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..247
                     /product="uncharacterized protein LOC128850642"
                     /calculated_mol_wt=26107
     Region          <2..>48
                     /region_name="Sec1"
                     /note="Sec1 family; cl15415"
                     /db_xref="CDD:472804"
     CDS             1..247
                     /gene="LOC128850642"
                     /coded_by="XM_054055612.1:888..1631"
                     /db_xref="GeneID:128850642"
ORIGIN      
        1 mcllsiteng lipkdyrslk tqylqsygpe hlltfhnlkr igllteqsaa etltavesrv
       61 sklvtdraaa esqpsapgel gaqpcpagsc csragwkhaa kvdtagtelr agqsfgpweq
      121 qgwqglllvl fwspelcasl cpavtnpeal scffsscfpg kitdafnsla rksnfparsk
      181 klglvcpcga aalptcplvp eqlwslcagw apsetptaqg qsccgsgvae gdegaegfkn
      241 grevpew
//
LOCUS       XP_053911588             247 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850642 [Cuculus canorus].
ACCESSION   XP_053911588
VERSION     XP_053911588.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055613.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527772) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..247
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..247
                     /product="uncharacterized protein LOC128850642"
                     /calculated_mol_wt=26107
     Region          <2..>48
                     /region_name="Sec1"
                     /note="Sec1 family; cl15415"
                     /db_xref="CDD:472804"
     CDS             1..247
                     /gene="LOC128850642"
                     /coded_by="XM_054055613.1:970..1713"
                     /db_xref="GeneID:128850642"
ORIGIN      
        1 mcllsiteng lipkdyrslk tqylqsygpe hlltfhnlkr igllteqsaa etltavesrv
       61 sklvtdraaa esqpsapgel gaqpcpagsc csragwkhaa kvdtagtelr agqsfgpweq
      121 qgwqglllvl fwspelcasl cpavtnpeal scffsscfpg kitdafnsla rksnfparsk
      181 klglvcpcga aalptcplvp eqlwslcagw apsetptaqg qsccgsgvae gdegaegfkn
      241 grevpew
//
LOCUS       XP_053911589             247 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850642 [Cuculus canorus].
ACCESSION   XP_053911589
VERSION     XP_053911589.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055614.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527772) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..247
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..247
                     /product="uncharacterized protein LOC128850642"
                     /calculated_mol_wt=26107
     Region          <2..>48
                     /region_name="Sec1"
                     /note="Sec1 family; cl15415"
                     /db_xref="CDD:472804"
     CDS             1..247
                     /gene="LOC128850642"
                     /coded_by="XM_054055614.1:961..1704"
                     /db_xref="GeneID:128850642"
ORIGIN      
        1 mcllsiteng lipkdyrslk tqylqsygpe hlltfhnlkr igllteqsaa etltavesrv
       61 sklvtdraaa esqpsapgel gaqpcpagsc csragwkhaa kvdtagtelr agqsfgpweq
      121 qgwqglllvl fwspelcasl cpavtnpeal scffsscfpg kitdafnsla rksnfparsk
      181 klglvcpcga aalptcplvp eqlwslcagw apsetptaqg qsccgsgvae gdegaegfkn
      241 grevpew
//
LOCUS       XP_053911590             247 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850642 [Cuculus canorus].
ACCESSION   XP_053911590
VERSION     XP_053911590.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055615.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527772) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..247
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..247
                     /product="uncharacterized protein LOC128850642"
                     /calculated_mol_wt=26107
     Region          <2..>48
                     /region_name="Sec1"
                     /note="Sec1 family; cl15415"
                     /db_xref="CDD:472804"
     CDS             1..247
                     /gene="LOC128850642"
                     /coded_by="XM_054055615.1:940..1683"
                     /db_xref="GeneID:128850642"
ORIGIN      
        1 mcllsiteng lipkdyrslk tqylqsygpe hlltfhnlkr igllteqsaa etltavesrv
       61 sklvtdraaa esqpsapgel gaqpcpagsc csragwkhaa kvdtagtelr agqsfgpweq
      121 qgwqglllvl fwspelcasl cpavtnpeal scffsscfpg kitdafnsla rksnfparsk
      181 klglvcpcga aalptcplvp eqlwslcagw apsetptaqg qsccgsgvae gdegaegfkn
      241 grevpew
//
LOCUS       XP_053911591             247 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850642 [Cuculus canorus].
ACCESSION   XP_053911591
VERSION     XP_053911591.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055616.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527772) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..247
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..247
                     /product="uncharacterized protein LOC128850642"
                     /calculated_mol_wt=26107
     Region          <2..>48
                     /region_name="Sec1"
                     /note="Sec1 family; cl15415"
                     /db_xref="CDD:472804"
     CDS             1..247
                     /gene="LOC128850642"
                     /coded_by="XM_054055616.1:880..1623"
                     /db_xref="GeneID:128850642"
ORIGIN      
        1 mcllsiteng lipkdyrslk tqylqsygpe hlltfhnlkr igllteqsaa etltavesrv
       61 sklvtdraaa esqpsapgel gaqpcpagsc csragwkhaa kvdtagtelr agqsfgpweq
      121 qgwqglllvl fwspelcasl cpavtnpeal scffsscfpg kitdafnsla rksnfparsk
      181 klglvcpcga aalptcplvp eqlwslcagw apsetptaqg qsccgsgvae gdegaegfkn
      241 grevpew
//
LOCUS       XP_053911592             294 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: RPE-retinal G protein-coupled receptor
            [Cuculus canorus].
ACCESSION   XP_053911592
VERSION     XP_053911592.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055617.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527773) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..294
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..294
                     /product="LOW QUALITY PROTEIN: RPE-retinal G
                     protein-coupled receptor"
                     /calculated_mol_wt=32968
     Region          17..276
                     /region_name="7tmA_Retinal_GPR"
                     /note="retinal G protein coupled receptor, member of the
                     class A family of seven-transmembrane G protein-coupled
                     receptors; cd15072"
                     /db_xref="CDD:320200"
     Region          18..44
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320200"
     Region          51..77
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320200"
     Region          88..118
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320200"
     Site            order(91,95..96,99..100,161..164,180..181,185,224,228,251,
                     255)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:320200"
     Region          126..146
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320200"
     Region          173..202
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320200"
     Region          204..234
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320200"
     Region          244..269
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320200"
     CDS             1..294
                     /gene="LOC104065089"
                     /coded_by="XM_054055617.1:173..1057"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /db_xref="GeneID:104065089"
ORIGIN      
        1 mvtayplpeg ftelevfaig tallveallg fclngltiis frkikelrtp snllvlsial
       61 adcgicinaf iaafssflry wpygsegcqi hgfqgfltal asisssaava wdryhhyctr
      121 skmqwstais mmmfawlfaa fwsvmpllgx geydyeplrt cctldyskgd rnyitflfal
      181 sifnfiipgf imltsyqsih qkfkktgqyk fntglplktl vicwgpycll cfyaavenvm
      241 fispkyrmip aviaktvptv dafiyalgne nyrggiwqfl tgqkiekevd nktk
//
LOCUS       XP_053911593             226 aa            linear   VRT 09-MAR-2023
DEFINITION  26S proteasome non-ATPase regulatory subunit 10 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053911593
VERSION     XP_053911593.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055618.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527774) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..226
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..226
                     /product="26S proteasome non-ATPase regulatory subunit 10
                     isoform X1"
                     /calculated_mol_wt=23931
     Region          <12..222
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          41..70
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          73..103
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(105,107,111..112,115..117,119..120,124,127,136,138,
                     140,144..145,148..150,152..153,157,160,169,171,173,
                     177..178,181..183,185..186,190,193,202)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          105..136
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          138..169
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          171..202
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..226
                     /gene="PSMD10"
                     /coded_by="XM_054055618.1:21..701"
                     /db_xref="GeneID:104062478"
ORIGIN      
        1 megsvsdvgv cnlayagrle elrgqllrdr alatkadqgn rtalhwacsa ghteiadlll
       61 glgvpvgdkd dagwtplhia ssagreeivk aliaqgapvn avnqngctpl hyaasknkqe
      121 iavmllenga dpdardhfes tplhraaakg nlkmvqillq hnasvdirds egntplhlac
      181 deerveeakl lvshgasihi enkeeltplk vakgglgail krmveg
//
LOCUS       XP_053911594             187 aa            linear   VRT 09-MAR-2023
DEFINITION  26S proteasome non-ATPase regulatory subunit 10 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053911594
VERSION     XP_053911594.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055619.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527774) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..187
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..187
                     /product="26S proteasome non-ATPase regulatory subunit 10
                     isoform X2"
                     /calculated_mol_wt=19803
     Region          <12..>176
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          41..70
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          73..103
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(74,78..79,82..84,86..87,91,94,103,105,107,111..112,
                     115..117,119..120,124,127,136,138,140,144..145,148..150,
                     152..153,157,160,169)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          105..136
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          138..169
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..187
                     /gene="PSMD10"
                     /coded_by="XM_054055619.1:21..584"
                     /db_xref="GeneID:104062478"
ORIGIN      
        1 megsvsdvgv cnlayagrle elrgqllrdr alatkadqgn rtalhwacsa ghteiadlll
       61 glgvpvgdkd dagwtplhia ssagreeivk aliaqgapvn avnqngctpl hyaasknkqe
      121 iavmllenga dpdardhfes tplhraaakg nlkmvqillq hnasvdirds egntplfsvd
      181 yvllsfc
//
LOCUS       XP_053911595             178 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: cysteine protease ATG4A-like [Cuculus
            canorus].
ACCESSION   XP_053911595
VERSION     XP_053911595.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055620.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527774) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..178
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..178
                     /product="LOW QUALITY PROTEIN: cysteine protease
                     ATG4A-like"
                     /calculated_mol_wt=20354
     Region          64..>178
                     /region_name="Peptidase_C54"
                     /note="Peptidase family C54; pfam03416"
                     /db_xref="CDD:460915"
     CDS             1..178
                     /gene="LOC128850644"
                     /coded_by="XM_054055620.1:49..585"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /db_xref="GeneID:128850644"
ORIGIN      
        1 merrgsvvpp rrgqegdgds grmesvlsry enqitilsdy leefpetdep vwilgrqhhl
       61 ntgkskllld isgrlwftyr rkfspiggtg pssdagwgcm lrcgqmmlaq alicrhlgrd
      121 wqwekhkkqp eeyhrilrcf ldrkdccysi hqmaqmgvge gksigewfgp ntvaqvlk
//
LOCUS       XP_053911596             276 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like, partial [Cuculus canorus].
ACCESSION   XP_053911596
VERSION     XP_053911596.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055621.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527776) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 18% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the amino end.
FEATURES             Location/Qualifiers
     source          1..276
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         <1..276
                     /product="olfactory receptor 14A16-like"
     Region          17..255
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          18..44
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          51..77
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(73,76..77,89..94,96..97,100,156,159..161,163..165,
                     167..168,213,216..217,219..220,223,229..230,232..234,237,
                     240..241)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          89..119
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          156..186
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..255
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..276
                     /gene="LOC128850646"
                     /coded_by="XM_054055621.1:<1..831"
                     /db_xref="GeneID:128850646"
ORIGIN      
        1 itqflllafa dtrelqllhf wlflgiylaa llgngliftt iacdhhlhtp myffllnlsl
       61 ldlgsisttv pksianslwd nraisymgcv aqvffvlfwf gaeyslltvm sydryiaick
      121 plhygtllgs rvnamdqffc eipqilklsc sdaifrevri lvvgvlvafa cfvfivvsyv
      181 qifravlrip seqgrhkafs tclphlavvs lfvstamfay lkpqsfshps mnlvvsflya
      241 vvppavnpli ysmrnkdlkd avwelitgwi ygaiks
//
LOCUS       XP_053911597             837 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein homolog, partial [Cuculus canorus].
ACCESSION   XP_053911597
VERSION     XP_053911597.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055622.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527777) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 22% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the carboxy end.
FEATURES             Location/Qualifiers
     source          1..837
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..>837
                     /product="hydrocephalus-inducing protein homolog"
     Region          629..728
                     /region_name="ASH"
                     /note="Abnormal spindle-like microcephaly-assoc'd,
                     ASPM-SPD-2-Hydin; pfam15780"
                     /db_xref="CDD:464865"
     CDS             1..837
                     /gene="LOC128850648"
                     /coded_by="XM_054055622.1:1..>2511"
                     /db_xref="GeneID:128850648"
ORIGIN      
        1 matrkicqpm gadgfqskva aprdqkpvrm rpvtvstscg qmtpsafmke ksfttkqrla
       61 aaqelklpqi tqlrdkreas hpkmtpsafm kekslptkqr laaaqelklp qitqlqdkre
      121 ashpkmtpsa fmkekslptk qrlaasqelk lpqitqlqdk reashpkmtp safmkeksft
      181 tkqrlaaaqe lklpqitqlr dkreashpkf stvdldrslf qplpsevvfq syvphevyem
      241 plvlrnvdkv prrlkivmes slyfkldvps gvcrkvapgm ttsfhilftp eenkdyfhql
      301 tciteremfn vpiraigara ildfpddlnf sicpvkyctq ktllvrnvgn rearycistq
      361 spfsvspsig nlgigeatqv tvefhpletg dhsrslvvhy dtgeaihttl ygvavdvnig
      421 lerssltvek tyltlsncst vvlhnrseit ahfrwksfat qekedqeklr lqrcnenvev
      481 fdctedpilr khlpplsvtf kgkkekvqrd pmlfsddvft idpvegdvlp nssieinvif
      541 epqearvyqk mvycdvsgre tglplcikge giepqlrlsf eqldigkvfv gstnsyevil
      601 fnkgaidasf slvhpttala scftfvpreg iispdglqvi kiffsstilg kfkeafkfrm
      661 kgspefvtlt irgcvigptf hfnvpsldfg vvsfgfprtl scclsntssv pmtvdlripg
      721 dgsgepsvts svlmsdnthp swkreaqghr rpteftitpc rgtilpqgcl diqvtlcsnt
      781 mkkyelalvm dvegvgknms allltarciv palrvlnpvv mfgqcflkvp yqqmltl
//
LOCUS       XP_053911598             133 aa            linear   VRT 09-MAR-2023
DEFINITION  calmodulin-regulated spectrin-associated protein 3-like, partial
            [Cuculus canorus].
ACCESSION   XP_053911598
VERSION     XP_053911598.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055623.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527779) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: incomplete on the carboxy end.
FEATURES             Location/Qualifiers
     source          1..133
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..>133
                     /product="calmodulin-regulated spectrin-associated protein
                     3-like"
     CDS             1..133
                     /gene="LOC128850649"
                     /coded_by="XM_054055623.1:357..>755"
                     /db_xref="GeneID:128850649"
ORIGIN      
        1 mvaappaaaa amrrgflvpe irpldqydga rarsaaslaw aiatgyggad kvpeelrdpf
       61 ytdqyqqehl kppvarvlvg sdlycrawre algppappdt aailaalrrr glaptlrqqp
      121 lreadlrqrp ill
//
LOCUS       XP_053911599             396 aa            linear   VRT 09-MAR-2023
DEFINITION  epoxide hydrolase 3-like isoform X1 [Cuculus canorus].
ACCESSION   XP_053911599
VERSION     XP_053911599.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055624.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527779) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..396
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..396
                     /product="epoxide hydrolase 3-like isoform X1"
                     /calculated_mol_wt=44589
     Region          104..391
                     /region_name="MenH"
                     /note="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase MenH and related
                     esterases, alpha/beta hydrolase fold [Coenzyme transport
                     and metabolism, General function prediction only];
                     COG0596"
                     /db_xref="CDD:440361"
     CDS             1..396
                     /gene="LOC128850650"
                     /coded_by="XM_054055624.1:17..1207"
                     /db_xref="GeneID:128850650"
ORIGIN      
        1 malghpldev pvvspsgptm llslcsllla ptrlllalwr llahlgvava avaaggaygl
       61 wglglllrrg pcrtfywrtr dqeppgladg tfgehrylhl qdsglrlhyv trgpttaplm
      121 lllhgfpqnw fcwrhllqef saqfrvvald lrgygasekp pgkdnyqlel lvedirqvie
      181 algrpnette atrkapkcvl vghdwgglla welatkyptl veklvlmdal rrgimggfaa
      241 chlsqllrss yiflfqlpwl pelllsladf elvktflmgr wtgiqnparr lteeemdayl
      301 yglsqpggls ptihyyrnlf rdtpvarepp ppptlllwgt rdafldvrlv prvlrrlrpg
      361 arhhlladag hwlpeedpqr iariirdfle eghqrs
//
LOCUS       XP_053911600             396 aa            linear   VRT 09-MAR-2023
DEFINITION  epoxide hydrolase 3-like isoform X1 [Cuculus canorus].
ACCESSION   XP_053911600
VERSION     XP_053911600.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055625.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527779) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..396
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..396
                     /product="epoxide hydrolase 3-like isoform X1"
                     /calculated_mol_wt=44589
     Region          104..391
                     /region_name="MenH"
                     /note="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase MenH and related
                     esterases, alpha/beta hydrolase fold [Coenzyme transport
                     and metabolism, General function prediction only];
                     COG0596"
                     /db_xref="CDD:440361"
     CDS             1..396
                     /gene="LOC128850650"
                     /coded_by="XM_054055625.1:17..1207"
                     /db_xref="GeneID:128850650"
ORIGIN      
        1 malghpldev pvvspsgptm llslcsllla ptrlllalwr llahlgvava avaaggaygl
       61 wglglllrrg pcrtfywrtr dqeppgladg tfgehrylhl qdsglrlhyv trgpttaplm
      121 lllhgfpqnw fcwrhllqef saqfrvvald lrgygasekp pgkdnyqlel lvedirqvie
      181 algrpnette atrkapkcvl vghdwgglla welatkyptl veklvlmdal rrgimggfaa
      241 chlsqllrss yiflfqlpwl pelllsladf elvktflmgr wtgiqnparr lteeemdayl
      301 yglsqpggls ptihyyrnlf rdtpvarepp ppptlllwgt rdafldvrlv prvlrrlrpg
      361 arhhlladag hwlpeedpqr iariirdfle eghqrs
//
LOCUS       XP_053911602             372 aa            linear   VRT 09-MAR-2023
DEFINITION  epoxide hydrolase 3-like isoform X2 [Cuculus canorus].
ACCESSION   XP_053911602
VERSION     XP_053911602.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055627.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527779) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..372
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..372
                     /product="epoxide hydrolase 3-like isoform X2"
                     /calculated_mol_wt=41587
     Region          105..367
                     /region_name="MenH"
                     /note="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase MenH and related
                     esterases, alpha/beta hydrolase fold [Coenzyme transport
                     and metabolism, General function prediction only];
                     COG0596"
                     /db_xref="CDD:440361"
     CDS             1..372
                     /gene="LOC128850650"
                     /coded_by="XM_054055627.1:3..1121"
                     /db_xref="GeneID:128850650"
ORIGIN      
        1 mmgppwrwat lltrspwcpp aappcscpsa rccwpppacc wpsgacwptw gwrwppwppg
       61 gptgsggwgf ccdgdlvgps tggrgtrnpp gwptapsgst atctsrfcwr hllqefsaqf
      121 rvvaldlrgy gasekppgkd nyqlellved irqviealgr pnetteatrk apkcvlvghd
      181 wggllawela tkyptlvekl vlmdalrrgi mggfaachls qllrssyifl fqlpwlpell
      241 lsladfelvk tflmgrwtgi qnparrltee emdaylygls qpgglsptih yyrnlfrdtp
      301 varepppppt lllwgtrdaf ldvrlvprvl rrlrpgarhh lladaghwlp eedpqriari
      361 irdfleeghq rs
//
LOCUS       XP_053911603             442 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850651, partial [Cuculus canorus].
ACCESSION   XP_053911603
VERSION     XP_053911603.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055628.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527780) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 13% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the carboxy end.
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..>442
                     /product="uncharacterized protein LOC128850651"
     Region          211..413
                     /region_name="Gag_p30"
                     /note="Gag P30 core shell protein; pfam02093"
                     /db_xref="CDD:426597"
     CDS             1..442
                     /gene="LOC128850651"
                     /coded_by="XM_054055628.1:1808..>3134"
                     /db_xref="GeneID:128850651"
ORIGIN      
        1 mppipksspl gcilmhwkeg qfgqemrkrk lveycnvwwt qydlegqvrw pengtldyst
       61 ilqlmqfcrh egkwdeipyv elflilrgke ewkkacgimv vstksdeqck gcvtekkcmk
      121 clavenvlqh kedddfdslv apsaplaprd tgvegdgede veieeqeyst tpvshrtrqr
      181 diqvkqqaps ailaplrqgv gpegpvyvkv pftpgdlmlw kqsagtyren pskvarvvkm
      241 ilktqnpdwd diqvlldtlm dstekemvlr tarervredi rqgivtgtvd qnfptedpmw
      301 dyntargmgn lrryqewivv gvqnampkti nwsklynvrq ektespsafl erlkevarky
      361 tdldveteqa kvqlaliflg qsqddirkkl qklegaelrn ldrlletawk vynnreress
      421 qrqqrhllav mqgrgqhnpa gr
//
LOCUS       XP_053911604             243 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850652 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911604
VERSION     XP_053911604.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055629.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527780) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..243
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..243
                     /product="uncharacterized protein LOC128850652 isoform X1"
                     /calculated_mol_wt=26040
     CDS             1..243
                     /gene="LOC128850652"
                     /coded_by="XM_054055629.1:172..903"
                     /db_xref="GeneID:128850652"
ORIGIN      
        1 mrvhssgcae psvclqlsvq gwgcvhaqmc mctctsvcvc wrgdargavg tlgmmvaqgp
       61 qchpsalqpp llpqiplaap rdlqplhtpp geaeeeagee gaegeeaqgs gqgrrsptta
      121 lhcrehlhei phqhtnaqwf ipdsgrfssg idcsveprgg vkdfvetmsa rdvstllerl
      181 aslratlleh lapprrcrsd hkptpllfvp lprhvrpdpg psslrrrywa rapllgagvg
      241 geg
//
LOCUS       XP_053911605             164 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850652 isoform X2 [Cuculus canorus].
ACCESSION   XP_053911605
VERSION     XP_053911605.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055630.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527780) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..164
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..164
                     /product="uncharacterized protein LOC128850652 isoform X2"
                     /calculated_mol_wt=17081
     CDS             1..164
                     /gene="LOC128850652"
                     /coded_by="XM_054055630.1:155..649"
                     /db_xref="GeneID:128850652"
ORIGIN      
        1 mrvhssgcae psvclqlsvq gwgcvhaqmc mctctsvcvc wrgdargavg tlgmmvaqgp
       61 qchpsalqpp llpqiplaap rdlqplhtpp geaeeeagee gaegeeaqgs gqgrrsptta
      121 lhcrehlhei phqhtnaqwf ipdsgrfssg igsrgeasap staa
//
LOCUS       XP_053911606             318 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: olfactory receptor 14A16-like [Cuculus
            canorus].
ACCESSION   XP_053911606
VERSION     XP_053911606.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055631.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527781) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 4% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="LOW QUALITY PROTEIN: olfactory receptor
                     14A16-like"
                     /calculated_mol_wt=34875
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850653"
                     /coded_by="XM_054055631.1:1..957"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /db_xref="GeneID:128850653"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 llnlsvidlg sisttvpksm anslwdnrii sysgcvsqvf llvffisaey slltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag fltallhtan tfslplcqgn aveqffceip
      181 qilklscshs dlrevglldv svcllfgcfv fivvsyvqif rsvlripseq grhkafstcl
      241 phlavvslfv stgtfaylkp psnssasldl vvsvlysvvp palnpliysl rnqqlkdavw
      301 klisgwfses mscsspss
//
LOCUS       XP_053911607             812 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850655 [Cuculus canorus].
ACCESSION   XP_053911607
VERSION     XP_053911607.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055632.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527783) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 45% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..812
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..812
                     /product="uncharacterized protein LOC128850655"
                     /calculated_mol_wt=92594
     Region          542..>693
                     /region_name="PRK13837"
                     /note="two-component system VirA-like sensor kinase"
                     /db_xref="CDD:237526"
     Region          576..603
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Site            order(593..594,599,602..603,634..635,638,641..642,645,
                     679..680,683,686..687,690,707..708,711,714..715,741..742,
                     745,748)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:293787"
     Region          617..645
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          661..691
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     CDS             1..812
                     /gene="LOC128850655"
                     /coded_by="XM_054055632.1:1..2439"
                     /db_xref="GeneID:128850655"
ORIGIN      
        1 makrssgrpw lawkedeshq ettstpepke vtvvwpleis vswlpiyskl kgtvdfvcsf
       61 lnctekevgr kleflrsiek lcqaaknfcl srgldvfyrt ynvvgkikvl leeesaekhl
      121 qfelwqkamc vitelssfer vlegqeklll eiclttllst plkakkflqv estldnyvlv
      181 saegateasr psellpghpm lmfctqpyhn slsslqtlet ldvmmeklvg iipvnrlgqe
      241 lqsifqtlle lmnsnrsvvr eralgrirkl irlltnkpkl qvqnkeprpm dsptsfeelr
      301 ipilgqvlgh lfvfphsvat kkvlasetly plydllsnqe srstarneie qiqndledts
      361 tmdwlstrdi srrfaghlha vektdvicva inalkessvl dkeaatnvly mamsapkcwl
      421 vdvpnivkci hgnlegikme sarqsmvdll llltkkhlte vvsvlmkiap psdssavpmw
      481 emmfsdpqii ekvlmevfkw hqakhdrilc mlpedtgilq lmvlackdfk tenfeelckf
      541 wrflrrpnpa lhplvlqglm tlsqraetar rmkillpdmt edlqdsngdv irktlvtlqn
      601 mmdhlkkket ssiavqllek llplfhhels qvreqavrlf tkqlkcvmrk hkkmmmakvr
      661 tallplfshl cdptpsvaka sqegllaaak flgwklpeel vqaklqwnta eclmkqdkkr
      721 aedyinqslq yldapqdavr eaavmflava arplkdtnpe kmaeicralq plktdpstsv
      781 cnvtiqamlt lgprskdrrk etllqrifhc rr
//
LOCUS       XP_053911609             355 aa            linear   VRT 09-MAR-2023
DEFINITION  relA-associated inhibitor-like, partial [Cuculus canorus].
ACCESSION   XP_053911609
VERSION     XP_053911609.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055634.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527783) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the amino end.
FEATURES             Location/Qualifiers
     source          1..355
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         <1..355
                     /product="relA-associated inhibitor-like"
     Region          <157..>263
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          158..184
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(159..160,163..165,167..168,172,175,184,186,188,
                     192..193,196..198,200..201,205,208,217,219,221,225..226,
                     229..231,233..234,238,241)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          186..217
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          219..248
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          288..344
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(294,296,299,303,324..325,338,340..341)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212885"
     CDS             1..355
                     /gene="LOC128850656"
                     /coded_by="XM_054055634.1:<1..1068"
                     /db_xref="GeneID:128850656"
ORIGIN      
        1 pgvttsvpsp gsalplpads cppdpfplpp evaerplspt rlqpvlpaea rrdpalgela
       61 rvlaemprpl krrgsqelra pppartrlyr hliprllhrt etddvaevte aeprsetqgt
      121 aapgspapap errsalrdps wprrrpgahv rlnplvllld aaltgeldvv qqavaelndp
      181 sqpndegita lhnaicganr pivdfliasg anvnspdshg wtplhcaasc ndtavcvalv
      241 rhgaavfatt ssdgsvaaek cdpyregyse cysylteveq gmgvlnsgvv yalwdfsaer
      301 ddelsfregd avtvlrrqpl deqewwwgsl yghegyvprn yfglfprvrp qrkki
//
LOCUS       XP_053911610             451 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: homeodomain-interacting protein kinase 4-like
            [Cuculus canorus].
ACCESSION   XP_053911610
VERSION     XP_053911610.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055635.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527783) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..451
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..451
                     /product="LOW QUALITY PROTEIN: homeodomain-interacting
                     protein kinase 4-like"
                     /calculated_mol_wt=50829
     Region          12..329
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(18..21,24,26,39,41,74,90..93,137,141..142,144,
                     158..159)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270870"
     CDS             1..451
                     /gene="LOC128850657"
                     /coded_by="XM_054055635.1:9..1364"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon"
                     /db_xref="GeneID:128850657"
ORIGIN      
        1 mmetlvvgae cydvvatvgk gtfgevtwgw rrstgemvai kilknkghhg ltaknelrll
       61 ealrevdaee shivhflqsf sdgvctylvl elldqnlfef qkqnnfsplp irhirtitaq
      121 vlaalvklke lsiihadlkp enimlvdhkr ypfhiklidf gsariftdih qiedpyiqtc
      181 fyrapeillg lpfwgkmdmw algcvmaelh lghxneydqv vhicstlgrp qdqllhaaek
      241 tpsffqwvpy ptgswqlrpp gkdmgkpkgw kkyvlsslnq laevnvhpaq evqaeccdlh
      301 gmvellkrvl twdsrkritp naalkhpfis lqqvkasfea tryyqlcqed lratkkdtga
      361 vevfhgkelp slnqtdgfnh akgdknqdvh qapvptfysh qhhqwarmep aagnwilvrs
      421 tngqktghhg gtigfggiee knpcgqpdtl p
//
LOCUS       XP_053911611             353 aa            linear   VRT 09-MAR-2023
DEFINITION  scavenger receptor cysteine-rich type 1 protein M130-like, partial
            [Cuculus canorus].
ACCESSION   XP_053911611
VERSION     XP_053911611.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055636.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527788) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the carboxy end.
FEATURES             Location/Qualifiers
     source          1..353
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..>353
                     /product="scavenger receptor cysteine-rich type 1 protein
                     M130-like"
     Region          17..112
                     /region_name="SRCR"
                     /note="Scavenger receptor cysteine-rich domain; pfam00530"
                     /db_xref="CDD:459844"
     Region          118..218
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          223..317
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     CDS             1..353
                     /gene="LOC128850660"
                     /coded_by="XM_054055636.1:1..>1058"
                     /db_xref="GeneID:128850660"
ORIGIN      
        1 meawspprsa slrlvggesr cdgrveifqh gtwsrvlddq wdeqeasvvc rqlqcgeaeg
       61 aynppkperg tgpvglrrvr ctghedsltl cntsvpesal aagvaedvgv vcrgsrrvrl
      121 angqgrcagr veiyhqgswg tvcddgwdlp datvvcrqlg cggaveasds arfgegsgqi
      181 wldgvscsga egalwdcpve awgqhdcghk edagvicsef valrlenstg csghlqvlyn
      241 gtwgsvcsts mtskevslac kelgcgdrgf ldtqgtsdtl sgvtwldhve cgerhssfwq
      301 clsdpwdtqs cndprdvthi scngmqpevl palgtecpss tsctdrekir aig
//
LOCUS       XP_053911612             313 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911612
VERSION     XP_053911612.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055637.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527788) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..313
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..313
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=34684
     Region          23..291
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..291
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..313
                     /gene="LOC128850662"
                     /coded_by="XM_054055637.1:79..1020"
                     /db_xref="GeneID:128850662"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittiacd hhlhipmyff
       61 llnlsfldlg sisttlpksm anslwdtrti symgcvaqvf fvlfffaaey flltvmsydr
      121 yvaickplhy gtllgsracv hmaaaawgag fltallhtan tfslslcqgn avdqffceip
      181 qilklscsda amrefgllvf svflafgcfv fivvsyvqif rsvlripseq grhkafstcl
      241 phlavvslfv stavfaylkp hsfshpstdl vvsflyavvp pavnpliysm rikdlkdavw
      301 elitvricga ins
//
LOCUS       XP_053911613             144 aa            linear   VRT 09-MAR-2023
DEFINITION  scavenger receptor cysteine-rich type 1 protein M130-like isoform
            X1 [Cuculus canorus].
ACCESSION   XP_053911613
VERSION     XP_053911613.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055638.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527788) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..144
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..144
                     /product="scavenger receptor cysteine-rich type 1 protein
                     M130-like isoform X1"
                     /calculated_mol_wt=15217
     Region          27..127
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     CDS             1..144
                     /gene="LOC128850663"
                     /coded_by="XM_054055638.1:85..519"
                     /db_xref="GeneID:128850663"
ORIGIN      
        1 mgmkgllspp vlwlllwvqp crgaaevrle ngsgrcagrv evkhegqwgt vcddlwdmad
       61 aavvckqlsc gaalgahnya yfgqgsgriw madvrcdgte salsdcrhng wgrnscshge
      121 dagvtcsagk gkpsgtrhpv wvcv
//
LOCUS       XP_053911614             143 aa            linear   VRT 09-MAR-2023
DEFINITION  scavenger receptor cysteine-rich type 1 protein M130-like isoform
            X2 [Cuculus canorus].
ACCESSION   XP_053911614
VERSION     XP_053911614.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055639.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527788) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..143
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..143
                     /product="scavenger receptor cysteine-rich type 1 protein
                     M130-like isoform X2"
                     /calculated_mol_wt=15146
     Region          27..127
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     CDS             1..143
                     /gene="LOC128850663"
                     /coded_by="XM_054055639.1:85..516"
                     /db_xref="GeneID:128850663"
ORIGIN      
        1 mgmkgllspp vlwlllwvqp crgaaevrle ngsgrcagrv evkhegqwgt vcddlwdmad
       61 aavvckqlsc gaalgahnya yfgqgsgriw madvrcdgte salsdcrhng wgrnscshge
      121 dagvtcsgkg kpsgtrhpvw vcv
//
LOCUS       XP_053911615             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911615
VERSION     XP_053911615.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055640.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527789) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 3% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=35002
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850665"
                     /coded_by="XM_054055640.1:79..1035"
                     /db_xref="GeneID:128850665"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 llnlsvldlg sisttvpksm asslwdsrti sysgcvaqvf lyaffitaey slltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flnallhtan tfslplcqgn aveqffceip
      181 hilklscshs yvrdvalidv svclffgcfv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvslfi stagfaylkp psisspsldl vvsflysvvp palnpliysl rnqqlkdavw
      301 elisgwaset inffscsa
//
LOCUS       XP_053911616             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911616
VERSION     XP_053911616.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055641.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527789) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=35086
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850667"
                     /coded_by="XM_054055641.1:1..957"
                     /db_xref="GeneID:128850667"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn glifttiacd hhlhtpmyff
       61 llnlsvidlg sisttvpksm asslwdnrii shsgcvsqvf llvffisaey flltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgaa fliallhttn tfslplcqgn aveqffceip
      181 qilklscsht yirevglldv svclcfgcfv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvslff stgtfaylkp psnsstsldl vvsvlysvvp palnpliysl rnqqlkdavw
      301 klisgwfses mscsspss
//
LOCUS       XP_053911617             508 aa            linear   VRT 09-MAR-2023
DEFINITION  protein regulator of cytokinesis 1-like [Cuculus canorus].
ACCESSION   XP_053911617
VERSION     XP_053911617.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055642.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527790) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..508
                     /product="protein regulator of cytokinesis 1-like"
                     /calculated_mol_wt=58940
     Region          22..477
                     /region_name="MAP65_ASE1"
                     /note="Microtubule associated protein (MAP65/ASE1 family);
                     pfam03999"
                     /db_xref="CDD:427641"
     CDS             1..508
                     /gene="LOC128850668"
                     /coded_by="XM_054055642.1:5982..7508"
                     /db_xref="GeneID:128850668"
ORIGIN      
        1 mrrsdvvaae avsvlngama alrdiweeig ipeemrlerm etvkghikem ldlmvaeees
       61 lkqrllknia lfqkeidrlc melqldpfeg ekentilqld knlrnrmdvl lqqkaermre
      121 lktlleqdqd lcdllctspf cidgnavpsl ddldryrqhl aflnaekeqr qeefvsskrq
      181 iillmeeldh tpdtsfeqev vcedeeafcl srdnitalqd llkqleaqrs qneavceelr
      241 sriialwdrl qvpveereas avhmagcgak trkalqleve nleelklqnm kdviqairae
      301 maaywdkcfy sqeqregfap yndenyteal lelheaevgk mktiyethkd lfeavqkwee
      361 nwkmfleler katdpsrftn rggkllkeek qraklqkvls klqeelesrv qaweqehegm
      421 flvkgqqvma yvseqwqlyh lekekekqer qlkkrrqiea emlygstprt pikrrmlgtt
      481 tpgkarklng ssiagatpns tvgsglgk
//
LOCUS       XP_053911618              96 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein homolog isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053911618
VERSION     XP_053911618.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055643.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527790) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..96
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..96
                     /product="hydrocephalus-inducing protein homolog isoform
                     X1"
                     /calculated_mol_wt=10730
     CDS             1..96
                     /gene="LOC128850669"
                     /coded_by="XM_054055643.1:800..1090"
                     /db_xref="GeneID:128850669"
ORIGIN      
        1 mlepclqmqm eqmlleehal eqlkalacgp pedtafdqra rcgllkaelp eyildfgyvi
       61 rgsththvvk itntgrfpvs fctgrrvlrs tagfyl
//
LOCUS       XP_053911619              95 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein homolog isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053911619
VERSION     XP_053911619.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055644.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527790) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..95
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..95
                     /product="hydrocephalus-inducing protein homolog isoform
                     X2"
                     /calculated_mol_wt=10658
     CDS             1..95
                     /gene="LOC128850669"
                     /coded_by="XM_054055644.1:799..1086"
                     /db_xref="GeneID:128850669"
ORIGIN      
        1 mlepclqmqm eqmlleehal eqlkalacgp pedtafdqra rcgllkaelp eyildfgyvi
       61 rgsththvvk itntgrfpvs fctgrrvlrs tgfyl
//
LOCUS       XP_053911620              95 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein homolog isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053911620
VERSION     XP_053911620.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055645.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527790) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..95
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..95
                     /product="hydrocephalus-inducing protein homolog isoform
                     X3"
                     /calculated_mol_wt=10620
     CDS             1..95
                     /gene="LOC128850669"
                     /coded_by="XM_054055645.1:799..1086"
                     /db_xref="GeneID:128850669"
ORIGIN      
        1 mlepclqmqm eqmlleehal eqlkalacgp pedtafdqra rcgllkaelp eyildfgyvi
       61 rgsththvvk itntgrfpvs fctgrrvlrs tgkke
//
LOCUS       XP_053911621             166 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein-like, partial [Cuculus canorus].
ACCESSION   XP_053911621
VERSION     XP_053911621.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055646.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527792) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 15% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the amino end.
FEATURES             Location/Qualifiers
     source          1..166
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         <1..166
                     /product="hydrocephalus-inducing protein-like"
     CDS             1..166
                     /gene="LOC128850670"
                     /coded_by="XM_054055646.1:<1..501"
                     /db_xref="GeneID:128850670"
ORIGIN      
        1 gfnkvgeaev tlrnsgkvgf tyavlspsva tagcprprep lvlpstgyvg agkeqalkvy
       61 ylpgvpggfc rtfqvqvghl epeeislkge gsfprislel prnikgneky ekvlkgakek
      121 meqdsqrdea vvlgetvaae tarapcpeqg sqcpagtwal pahrgp
//
LOCUS       XP_053911622              95 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein homolog [Cuculus canorus].
ACCESSION   XP_053911622
VERSION     XP_053911622.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055647.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527792) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 19% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..95
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..95
                     /product="hydrocephalus-inducing protein homolog"
                     /calculated_mol_wt=10743
     CDS             1..95
                     /gene="LOC128850671"
                     /coded_by="XM_054055647.1:3..290"
                     /db_xref="GeneID:128850671"
ORIGIN      
        1 mqmeqmllee haleqmkala cgppedtafd qrarcgllka elpeyildfg yvirgsthth
       61 vvkitntgrf pvsfctgrrv lhstgnhywc dftwa
//
LOCUS       XP_053911624             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911624
VERSION     XP_053911624.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055649.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527792) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 3% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=35080
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850672"
                     /coded_by="XM_054055649.1:1..957"
                     /db_xref="GeneID:128850672"
ORIGIN      
        1 msnsssitqf lllaftdtwe lqllhfwlfl giylavllgn gliittiacd hhlhtpmyff
       61 llnlsvidlg sisttvpksm anslwdnrii sysgcvsqvf llvffisaey slltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flhallhtan tfslplcqgn aveqffceip
      181 qilklscshs dlrevwlldv sacllfgcfv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvslfv stgtfaylkp psnsstsldl vvsvlysvlp palnpliysl rnqqlkdavw
      301 klisgwfsia mscsspsa
//
LOCUS       XP_053911625             126 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14I1-like, partial [Cuculus canorus].
ACCESSION   XP_053911625
VERSION     XP_053911625.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055650.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527795) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: incomplete on the carboxy end.
FEATURES             Location/Qualifiers
     source          1..126
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..>126
                     /product="olfactory receptor 14I1-like"
     Region          23..>126
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          25..49
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          58..80
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          96..118
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..126
                     /gene="LOC104066253"
                     /coded_by="XM_054055650.1:1..>378"
                     /db_xref="GeneID:104066253"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 llnlsvldlg sisttvpksm vnslwekrti sysgcvsqvf lfalfivaef slltimsydr
      121 yvaick
//
LOCUS       XP_053911626             467 aa            linear   VRT 09-MAR-2023
DEFINITION  nitric oxide synthase, endothelial-like [Cuculus canorus].
ACCESSION   XP_053911626
VERSION     XP_053911626.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055651.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527798) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 5% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..467
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..467
                     /product="nitric oxide synthase, endothelial-like"
                     /calculated_mol_wt=50539
     Region          <171..441
                     /region_name="FNR_like"
                     /note="Ferredoxin reductase (FNR), an FAD and NAD(P)
                     binding protein, was intially identified as a chloroplast
                     reductase activity, catalyzing the electron transfer from
                     reduced iron-sulfur protein ferredoxin to NADP+ as the
                     final step in the electron transport...; cl06868"
                     /db_xref="CDD:447143"
     Site            order(215..218,233..235,251..254,293)
                     /site_type="other"
                     /note="FAD binding pocket [chemical binding]"
                     /db_xref="CDD:99799"
     Site            order(215,217..218)
                     /site_type="other"
                     /note="conserved FAD binding motif [chemical binding]"
                     /db_xref="CDD:99799"
     Site            order(251,254,257,263)
                     /site_type="other"
                     /note="phosphate binding motif [ion binding]"
                     /db_xref="CDD:99799"
     Site            order(288,292..295,297)
                     /site_type="other"
                     /note="beta-alpha-beta structure motif"
                     /db_xref="CDD:99799"
     Site            order(293..294,324..326,392..393)
                     /site_type="other"
                     /note="NAD binding pocket [chemical binding]"
                     /db_xref="CDD:99799"
     CDS             1..467
                     /gene="LOC128850674"
                     /coded_by="XM_054055651.1:1..1404"
                     /db_xref="GeneID:128850674"
ORIGIN      
        1 mwglwvlwyw gavgsgccgt gtlsdpgpgl lgcsvpgrla ywdagpsllg llgcwvppgl
       61 gywslgpsrv gilvagslpg wdtgrwvppg lgywslgpsr vgilvagslp gwdtghwvpp
      121 glgywslgps qvgilvagsl pgwdtgrwvp pglgywaaga slgprpcags sqdarlyeew
      181 kwfrcptlle vleefpsvel tasllltqlp llqpryysis sspashpdei hltvavvtyh
      241 sengqgplhy gvcstwlaql qpgdtvpafi rgapsfrlpp dpqtpcilvg pgtgvapfrs
      301 fwhhrlhllr drggplgrmv lvfgcrssal dhiyreemee aqekgalslv vtafsrepgt
      361 pktyvqdvlr sqlaaevhev lcerdghlyv cgdvtmatev lqtvqqvlaq rgamtlsqag
      421 dflgelrdkn ryhedifglt frtqevafri rsqsfsaqer pppsadp
//
LOCUS       XP_053911628             553 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850675 [Cuculus canorus].
ACCESSION   XP_053911628
VERSION     XP_053911628.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055653.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527800) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 19% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..553
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..553
                     /product="uncharacterized protein LOC128850675"
                     /calculated_mol_wt=60622
     CDS             1..553
                     /gene="LOC128850675"
                     /coded_by="XM_054055653.1:1..1662"
                     /db_xref="GeneID:128850675"
ORIGIN      
        1 mdgtdsktvv lhnptplpva wrirgleglg egfsvsqdag iigpcsefgm rlcfeatkvd
       61 sikktfqvev sdaekllgiv qvesiqvfae aydigldinv saegstrsct grearlplhi
      121 kaegigprlr fsfeqldign vfagsahsye vilfnkgavd apfssippst algscftflp
      181 wkgiissdgl qvmkisfsst ilgkfteefr frvngssepv tlaissagrl rhlrehsfie
      241 ehidrqvspi eslrlmclls itengevsvc sgqgrldrgp sslgaeltll lptglipkdy
      301 rslktqylqs ygpehlltfh klkrigllte qsaaetltav esrvsklvtd raaaesqpsa
      361 pgelgaqpcp agsccsragw khaakvdtag telragqsfg pweqqgwqer sqmhlilwpe
      421 raifqlears wgwyvlvell pcprarwcqs ssghsvqagh pqrhprhrar aavavgwqrd
      481 treqrgsrma erfqngkglw ewqrgsgvpe gfgkgkavqg wkkdsrmpeg lrncrgvwgc
      541 qresgvagrf rna
//
LOCUS       XP_053911629             112 aa            linear   VRT 09-MAR-2023
DEFINITION  uridine phosphorylase 1-like [Cuculus canorus].
ACCESSION   XP_053911629
VERSION     XP_053911629.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055654.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527800) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..112
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..112
                     /product="uridine phosphorylase 1-like"
                     /calculated_mol_wt=11803
     Region          <1..>103
                     /region_name="NP-I"
                     /note="nucleoside phosphorylase-I family; cl00303"
                     /db_xref="CDD:444819"
     CDS             1..112
                     /gene="LOC128850676"
                     /coded_by="XM_054055654.1:28..366"
                     /db_xref="GeneID:128850676"
ORIGIN      
        1 mgipsisivs helikllyra kcsnvttvci gtsggiglep gsvvitrqcg gtpfkpqfee
       61 vvlgktvlrs tnldeqlake lmqcgkeigr fhtvigntrc pldcsgvasp lm
//
LOCUS       XP_009559822             699 aa            linear   VRT 09-MAR-2023
DEFINITION  symplekin, partial [Cuculus canorus].
ACCESSION   XP_009559822
VERSION     XP_009559822.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009561527.2
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527802) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009559822.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         <1..>699
                     /product="symplekin"
     Region          <496..551
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Region          550..>692
                     /region_name="Symplekin_C"
                     /note="Symplekin tight junction protein C terminal;
                     pfam12295"
                     /db_xref="CDD:463523"
     CDS             1..699
                     /gene="SYMPK"
                     /coded_by="XM_009561527.2:<1..>2098"
                     /db_xref="GeneID:104059814"
ORIGIN      
        1 glpvaieatp rgtftpslsp peaalgddde dkdleavaat avpktggaag vpsdiditae
       61 flqplltpen vanlvlismv ylpeampasf qatytpvesa gteaqikhla rlmatqmtaa
      121 glgpgveqtk hlkeepkeek takpesvvik rrlsalaqgq aisvlgsqgs atnlleeeip
      181 qakrrpepii patqprlvga ggrkkvfrls dvlkpltdvq veklklnavt rilraerava
      241 csgaaqarvk ilaalvtrle vplksevlaf iledvrsrld lafawlfqey ntylshlpgg
      301 tlerydecli gllgglqekp dqkdgvfskl vleaplites alevirkyce desrtylgms
      361 tlrdlifkrp srqfqylhvl ldlsshekdk vrqqallfik rmyekeqlrd yvekfalnyl
      421 qllvhpnpps vlfgadkdte vaapwteeti kqclylylal lphnhklihe lasvyteaia
      481 dikrtvlrvi eqpirgmgmn spellllven cpkgaetlvt rclhsltdkv ppspelvkrv
      541 rdlyhkrlpd vrflipvlng lekkeviqal pkliklnpiv vkevfnrllg tqhgdgasav
      601 splnpgelli alhnidsakc dmksiikatn lclaernvyt sevlavvlqq lleqsplpvl
      661 lmrtviqgls iyprlgpfvi nvlarlimkq vwlsvcpsv
//
LOCUS       XP_053911630             416 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911630
VERSION     XP_053911630.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055655.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527803) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 6% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..416
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=46178
     Region          134..403
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          135..161
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          168..194
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(190,193..194,206..211,213..214,217,262,264..268,304,
                     307..309,311..313,315..316,361,364..365,367..368,371,
                     377..378,380..382,385,388..389)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          206..236
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          248..269
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          304..334
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          341..371
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          378..403
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..416
                     /gene="LOC128850677"
                     /coded_by="XM_054055655.1:1..1251"
                     /db_xref="GeneID:128850677"
ORIGIN      
        1 mpeftpwkrs yqlgetrsfp vtfllsyliv genkvlllss sfsdrnrqcr tevslpaegg
       61 kmrdgfrlfl srfpwsprdt wreprggrer aalgcssaae lgwapgterq qmsnsssitq
      121 flllafadtq elqllhfwlf lgiylaallg ngliittiac dhhlhtpmyf filnlsvldl
      181 gsisttvpka ttnslwdtra isyegcasqv flflffisae yflltvmsyd ryvaickplh
      241 ygtllgsrac vhmaaaawaa gfltallhta ntfslslcqg navdqffcei pqilklscsh
      301 valrevgllv vgvflsfgcf vfivvsyvqi frsvlripse qgrhkafstc lphlavvslf
      361 istgvfaylk ppsisspsld ivvsflysvv ppalnpliys lrnqqlkdav wklisg
//
LOCUS       XP_053911631             305 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14J1-like [Cuculus canorus].
ACCESSION   XP_053911631
VERSION     XP_053911631.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055656.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527805) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="olfactory receptor 14J1-like"
                     /calculated_mol_wt=33656
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..305
                     /gene="LOC128850678"
                     /coded_by="XM_054055656.1:16..933"
                     /db_xref="GeneID:128850678"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittiand hhlhtpmyff
       61 llnlsildlg sisttvpksm anslwntrai symgcvaqvf fvlflfgaey slltvmsydr
      121 yvaickplhy gtllgsracv hmaaaawgaa flnallqttn tfslplcqgn aveqffceip
      181 qilklscshs ylreagisvf vvclgfgcfv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvslfv stamfaylkp psisspsldl vvsvlysvvp palnpliysl rnqqlkdavw
      301 klksr
//
LOCUS       XP_053911632              80 aa            linear   VRT 09-MAR-2023
DEFINITION  protein cornichon homolog 2 [Cuculus canorus].
ACCESSION   XP_053911632
VERSION     XP_053911632.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055657.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527807) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..80
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..80
                     /product="protein cornichon homolog 2"
                     /calculated_mol_wt=9295
     Region          <1..71
                     /region_name="Cornichon"
                     /note="Cornichon protein; cl04000"
                     /db_xref="CDD:470930"
     CDS             1..80
                     /gene="LOC128850679"
                     /coded_by="XM_054055657.1:108..350"
                     /db_xref="GeneID:128850679"
ORIGIN      
        1 mflcaaewvt lglnlpllly hlwryfhrpa dgseglfdav simdadilgy cqkeawckla
       61 fyllsffyyl ysmvytlvsf
//
LOCUS       XP_053911633             121 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein homolog, partial [Cuculus canorus].
ACCESSION   XP_053911633
VERSION     XP_053911633.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055658.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527808) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 26% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the carboxy end.
FEATURES             Location/Qualifiers
     source          1..121
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..>121
                     /product="hydrocephalus-inducing protein homolog"
     CDS             1..121
                     /gene="LOC128850680"
                     /coded_by="XM_054055658.1:29..>393"
                     /db_xref="GeneID:128850680"
ORIGIN      
        1 mvycdvsgre trlplciege giepqlrlsf eqldigkvfv gstniyevil fnkgavdasf
       61 ilvhpttala scftfvpreg tispdglqvi kisfssnilg kfkkafkfrm kgspefvtlt
      121 i
//
LOCUS       XP_053911634             680 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 1
            regulatory subunit 10-like, partial [Cuculus canorus].
ACCESSION   XP_053911634
VERSION     XP_053911634.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055659.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527809) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 2% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the carboxy end.
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..>680
                     /product="LOW QUALITY PROTEIN: serine/threonine-protein
                     phosphatase 1 regulatory subunit 10-like"
     Site            order(71..72,81,121..122)
                     /site_type="other"
                     /note="putative RNA polymerase binding site [polypeptide
                     binding]"
                     /db_xref="CDD:238107"
     Region          74..146
                     /region_name="TFS2N"
                     /note="Domain in the N-terminus of transcription
                     elongation factor S-II (and elsewhere); smart00509"
                     /db_xref="CDD:197766"
     CDS             1..680
                     /gene="LOC128850681"
                     /coded_by="XM_054055659.1:1453..>3492"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /db_xref="GeneID:128850681"
ORIGIN      
        1 mgsgaidpke llkgldcflg hngevknmds iskifnlmkd aqklvsrciy lnilmqtrsq
       61 dilaefirig gykllntwlt aakasnnvaf lqqilltlqh lpltvdhlkq nntaklvkrl
      121 skshdneelr qlaailvsdw mgvirshssv qpaerdrkrr reenkskmvv qekpqetkae
      181 akaeevpekk rekpkslrtt apshakfrst glemetpssa ptkkmrsasg adkyglkpmp
      241 vkrqnvsvls geaapakkky kplntapnaa keikvktipp qpvevpepme fcesrriswk
      301 gkqrrqglhw elsplvpptg laessmdvrs menplesgpm akkarkkktv swaeeeklcq
      361 yfyfewdete rvnvnkmkgf geaarwemlk dweafetarr lshdameekv pwvyprlldl
      421 paplvvpgss scerfiqaer ekgilqeifl skesvpdsph epdlescepl ppkliplded
      481 csaeeavypn tmdtsaaspa adasagakll pilanlmgsv gagkspqgpv pattinvqei
      541 ltsimggpsp hkaeellkqe ysekikhllg nlqaqptgpg gvphgllgpg pmatgfppgp
      601 kglqqfppgg plpgphgggg gggpslppgp gmpggprllg ppppqrggne fwdaldwggv
      661 vsraaepprl pplhdegqvp
//
LOCUS       XP_053911636             377 aa            linear   VRT 09-MAR-2023
DEFINITION  latent-transforming growth factor beta-binding protein 3-like,
            partial [Cuculus canorus].
ACCESSION   XP_053911636
VERSION     XP_053911636.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055661.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527810) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..377
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         <1..>377
                     /product="latent-transforming growth factor beta-binding
                     protein 3-like"
     Region          42..77
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; cd00054"
                     /db_xref="CDD:238011"
     Site            order(42,45,62)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238011"
     Region          127..>156
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain; smart00179"
                     /db_xref="CDD:214542"
     Site            order(127,130,144)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238011"
     Region          168..207
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain; smart00179"
                     /db_xref="CDD:214542"
     Site            order(168,171,186)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238011"
     Region          209..240
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF domain; pfam07645"
                     /db_xref="CDD:429571"
     Site            order(209,212,228)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238011"
     Region          270..312
                     /region_name="TB"
                     /note="TB domain; pfam00683"
                     /db_xref="CDD:459903"
     CDS             1..377
                     /gene="LOC128850682"
                     /coded_by="XM_054055661.1:<1..>1134"
                     /codon_start=3
                     /db_xref="GeneID:128850682"
ORIGIN      
        1 tdecklnrni cgpgecvmgp ggyscicypg yrwhpqrrac tdvneceaea epcgagrglc
       61 mntagsytcq crrgfrlsmr ggaracadin eclegscpeg kcenhpggfv ctpcppgfrg
      121 hhgacsdvne ceegspcapg lclntpgsyq cqcppgtrpt aeppgcqdvd ecalgaacgv
      181 ggeclntpgs frcrcrpgfa prhgrrcldi decalqpgpc appgsctnte gsfscscpgg
      241 laphghrcpp pepppprklc ylnlddsilc dsvlgtnvtr gecccslgag wgdlcevfpc
      301 plpssaefva lcpdgrgfip degpphgarg lrdidecelf gaeickegkc vntqpgfecy
      361 ckqgfdydsa vrqclgg
//
LOCUS       XP_053911637             422 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein phosphatase 5 [Cuculus canorus].
ACCESSION   XP_053911637
VERSION     XP_053911637.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055662.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527811) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..422
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..422
                     /product="serine/threonine-protein phosphatase 5"
                     /calculated_mol_wt=47411
     Region          <15..143
                     /region_name="NlpI"
                     /note="Lipoprotein NlpI, contains TPR repeats [Cell
                     wall/membrane/envelope biogenesis]; COG4785"
                     /db_xref="CDD:443815"
     Region          24..52
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(25,28..29,32..33,35,59,62..63,66..67,69..70,93,
                     96..97,100..101,104)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          57..87
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          92..120
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          172..>407
                     /region_name="MPP_superfamily"
                     /note="metallophosphatase superfamily, metallophosphatase
                     domain; cl13995"
                     /db_xref="CDD:472684"
     Site            order(238,240,267,299..300,348)
                     /site_type="active"
                     /db_xref="CDD:277317"
     Site            order(238,240,267,299,348)
                     /site_type="metal-binding"
                     /note="metal binding site [ion binding]"
                     /db_xref="CDD:277317"
     CDS             1..422
                     /gene="PPP5C"
                     /coded_by="XM_054055662.1:88..1356"
                     /db_xref="GeneID:104067831"
ORIGIN      
        1 maegeraesg gpgrppspat leraealktq aneffkgkdy enavkfyssa ielnptnaiy
       61 ygnrslaylr tecygyalad atravqldgk yvkgyyrraa snmalgkfka alrdyetvvk
      121 vrpndkdakl kyqechkivk qkaferaias dehkrsvvdt ldiesmtied eyigpklegg
      181 kvtltfmkdl mqwykeqkkl hrkcayqilv qvkevlaklp tlvettlket eqvtvcgdth
      241 gqyydllnif elnglpsevn pyifngdfvd rgsfsvevil tlfgfkllyp ehfhllrgnh
      301 etdnmnqiyg fegevkakyt aqmfalfsev fewlplaqci ngkvlimhgg lfsedgvtld
      361 dirkiernrq ppdsgpmcdl lwsdpqpqvs gtvspspqrv prgrglsppc pllpssvstv
      421 sp
//
LOCUS       XP_053911638             644 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 1
            regulatory subunit 10-like [Cuculus canorus].
ACCESSION   XP_053911638
VERSION     XP_053911638.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055663.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527813) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 4% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..644
                     /product="LOW QUALITY PROTEIN: serine/threonine-protein
                     phosphatase 1 regulatory subunit 10-like"
                     /calculated_mol_wt=69826
     Region          74..146
                     /region_name="TFS2N"
                     /note="Domain in the N-terminus of transcription
                     elongation factor S-II (and elsewhere); smart00509"
                     /db_xref="CDD:197766"
     CDS             1..644
                     /gene="LOC128850683"
                     /coded_by="XM_054055663.1:751..2685"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /db_xref="GeneID:128850683"
ORIGIN      
        1 mgsgaidpke llkgldcflg hngevknmds iskifnlmkd aqklvsrciy lnilmqtqsq
       61 dilakfiqig gykllniwlt aakasnnvaf lqqilltlqh lpltvdhlkq nntaklvkrl
      121 skshdneelr qlaailvsdw mgvirshssv qpaerdrkrr reenkskmvv qekpqetkae
      181 akaeevpekk rekpkslrtt apshakfrst glemetpssa pakkmrsasg adkyglkpmp
      241 vkrqnvsvls geaapakkky kplntapnaa keikvktipp qrlaessmdv rsmenplesg
      301 pmakkarkkk tvswaeeekl cqyfyfewde tervnvnkmk gfgeaarwem lkdweafeta
      361 rrlshdamek vpwvyprlld lpaplivpgs gsrerfiqae rekgilqeif lskesvpdsp
      421 hepdlescep lppkliplde dcsaeeavyp ntmdtsaasp aadasaeakl lpilanlmgs
      481 vgagkspqgp apaaniniqe iltsimggps phsaedllkq eysekikhll gnlqaqptgp
      541 ggvphgllgp gpmatgfppg pkglqqfppg gplpgphggg gggggpslpp gpgmpggprl
      601 lgppppqrgg nefwdapdxg gvasrwpprq wdarggplsp pprp
//
LOCUS       XP_053911639             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911639
VERSION     XP_053911639.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055664.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527815) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=35104
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850684"
                     /coded_by="XM_054055664.1:16..972"
                     /db_xref="GeneID:128850684"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 llnlsvldlg sisttvpksm anslwdnrti shsgcvsqvf lyvffisaey flltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flhallhtan tfslplcqgn aveqffceip
      181 qilklscshp flreiwlldv saclsfgcfv fivvsyvqif ravmripseq grhkafstcl
      241 phlavvslfv stgafaylkp psisspsldl avsvlysvlp palnpliysl rnqqlrdavw
      301 kliagwfsea mncsspsa
//
LOCUS       XP_053911640             147 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized aarF domain-containing protein kinase 5-like,
            partial [Cuculus canorus].
ACCESSION   XP_053911640
VERSION     XP_053911640.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055665.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527816) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: incomplete on the carboxy end.
FEATURES             Location/Qualifiers
     source          1..147
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..>147
                     /product="uncharacterized aarF domain-containing protein
                     kinase 5-like"
     Region          48..>144
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     CDS             1..147
                     /gene="LOC128850685"
                     /coded_by="XM_054055665.1:22..>463"
                     /db_xref="GeneID:128850685"
ORIGIN      
        1 msrchvraae rltgaalrng glyvklgqsl cafdhllppe yprslrrled ralsrgrhev
       61 delfledfqr pvsglfrdfd yepvasasla qvhratrhdg ttvavkvqyi dlrdrfegdi
      121 rtvelllrlv efmhpnfalg wvlqvkg
//
LOCUS       XP_053911641             308 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14J1-like [Cuculus canorus].
ACCESSION   XP_053911641
VERSION     XP_053911641.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055666.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527822) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..308
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..308
                     /product="olfactory receptor 14J1-like"
                     /calculated_mol_wt=34110
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..308
                     /gene="LOC128850686"
                     /coded_by="XM_054055666.1:25..951"
                     /db_xref="GeneID:128850686"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 llnlsildlg smsttvpksm asslwnnrti sysgcvaqlf lfifflgaey flltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flnallhtan ifslplcqgn aveqffceip
      181 qilklscshs flrevglldv svclffgcfv filvsyvqif rvvmripsdq grhkafstcl
      241 phlavvsvfy stagfaylkp psisspsldl vvsvlysvvp palnpliysl rnqqlkdavr
      301 klitgwfs
//
LOCUS       XP_053911642             234 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein J1-B-like, partial [Cuculus canorus].
ACCESSION   XP_053911642
VERSION     XP_053911642.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055667.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527823) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: incomplete on the amino end.
FEATURES             Location/Qualifiers
     source          1..234
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         <1..234
                     /product="forkhead box protein J1-B-like"
     CDS             1..234
                     /gene="LOC128850687"
                     /coded_by="XM_054055667.1:<1..707"
                     /codon_start=3
                     /db_xref="GeneID:128850687"
ORIGIN      
        1 gfwkldpqya drlksgafkk qrmrpvqihp tstekaqqea evgtslatlg stsnkvfsvs
       61 leaqqlleef eefiknqnhn pvdvkaglkr kqplpkqmak vrrlsssall tqeeqtqlgs
      121 lkgdtdtnln refstsgdle vtpavspkky nlevvvhgqh vdcpqgleqv ltesnqndls
      181 ldescmaasf lqhlfdegts dsfcntvnve qlfdvsdisv padvsdwssl asll
//
LOCUS       XP_053911643             307 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14C36-like [Cuculus canorus].
ACCESSION   XP_053911643
VERSION     XP_053911643.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055668.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527826) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..307
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..307
                     /product="olfactory receptor 14C36-like"
                     /calculated_mol_wt=33973
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..307
                     /gene="LOC128850688"
                     /coded_by="XM_054055668.1:1..924"
                     /db_xref="GeneID:128850688"
ORIGIN      
        1 msnsssitqf lllafadtwe lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 llnlsildvg fisttvpksm anslwdirti sysgcvaqvf lfvfllgaef alltvmsydr
      121 yvaickplhy gtllgsracv hmaaaawgag llnallhtan tfslslcqgn avhqffceip
      181 qilklscsda alrefelllf ivfltfgcfv fivvsyvqif rsvlripseq grhkafstcl
      241 phlavvslfi stsffaylkp ptisspsldl vmavlysvvp palnpliysl rnqqlkdavw
      301 klmsgsf
//
LOCUS       XP_053911644              97 aa            linear   VRT 09-MAR-2023
DEFINITION  calpain small subunit 1-like, partial [Cuculus canorus].
ACCESSION   XP_053911644
VERSION     XP_053911644.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055669.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527830) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: incomplete on the carboxy end.
FEATURES             Location/Qualifiers
     source          1..97
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..>97
                     /product="calpain small subunit 1-like"
     CDS             1..97
                     /gene="LOC128850689"
                     /coded_by="XM_054055669.1:1..>291"
                     /db_xref="GeneID:128850689"
ORIGIN      
        1 mflvkgllgg ggsggggggl pggigsvlgg llsggggggg gggamgvlgg visaiseaaa
       61 hynpeppppr thistvdane seevrqfrrl faqlagd
//
LOCUS       XP_053911646              96 aa            linear   VRT 09-MAR-2023
DEFINITION  adhesion G protein-coupled receptor L1-like, partial [Cuculus
            canorus].
ACCESSION   XP_053911646
VERSION     XP_053911646.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055671.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527836) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..96
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         <1..>96
                     /product="adhesion G protein-coupled receptor L1-like"
     Region          <2..30
                     /region_name="HRM"
                     /note="Hormone receptor domain; cl02422"
                     /db_xref="CDD:413313"
     Region          40..>82
                     /region_name="GAIN"
                     /note="GPCR-Autoproteolysis INducing (GAIN) domain;
                     pfam16489"
                     /db_xref="CDD:465137"
     CDS             1..96
                     /gene="LOC128850690"
                     /coded_by="XM_054055671.1:<1..>290"
                     /codon_start=3
                     /db_xref="GeneID:128850690"
ORIGIN      
        1 iasfqcllgl gvwnprgpdl snctspwvnq vaqkiksgen aaniaselar htrgpvyagd
       61 vssavrlleq lldildaqlq alrpveresa gknynk
//
LOCUS       XP_053911647             139 aa            linear   VRT 09-MAR-2023
DEFINITION  aryl-hydrocarbon-interacting protein-like 1, partial [Cuculus
            canorus].
ACCESSION   XP_053911647
VERSION     XP_053911647.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055672.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527838) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 34% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..139
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         <1..>139
                     /product="aryl-hydrocarbon-interacting protein-like 1"
     Region          37..88
                     /region_name="DMPK_coil"
                     /note="DMPK coiled coil domain like; pfam08826"
                     /db_xref="CDD:117396"
     CDS             1..139
                     /gene="LOC128850691"
                     /coded_by="XM_054055672.1:<1..>419"
                     /codon_start=3
                     /db_xref="GeneID:128850691"
ORIGIN      
        1 prgrglslgg agfqpeqalp lqapvqvpvp vpeavselqa alaaerrgra alerelellr
       61 aagqglarrl qeaeshnlel evklqrlqsp ppgpppppha ggavpptdpp adpgtggppw
      121 lfrpplgvpl srhlllwar
//
LOCUS       XP_009561722             453 aa            linear   VRT 09-MAR-2023
DEFINITION  PHD finger protein 7 [Cuculus canorus].
ACCESSION   XP_009561722
VERSION     XP_009561722.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563427.2
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527841) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561722.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 26% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..453
                     /product="PHD finger protein 7"
                     /calculated_mol_wt=50193
     Region          5..112
                     /region_name="ePHD_PHF7_G2E3_like"
                     /note="Extended PHD finger found in PHD finger protein 7
                     (PHF7) and G2/M phase-specific E3 ubiquitin-protein ligase
                     (G2E3); cd15669"
                     /db_xref="CDD:277139"
     Site            order(65,74..78,84,107)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277139"
     Region          123..181
                     /region_name="RING_Ubox"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; cl17238"
                     /db_xref="CDD:473075"
     Site            order(128,131,149,151,155,158,173,176)
                     /site_type="other"
                     /note="cross-brace motif"
                     /db_xref="CDD:438111"
     Region          215..268
                     /region_name="PHD_SF"
                     /note="PHD finger superfamily; cl22851"
                     /db_xref="CDD:473978"
     Site            order(215,238..241,245,263)
                     /site_type="other"
                     /note="histone H3 binding site [polypeptide binding]"
                     /db_xref="CDD:276966"
     CDS             1..453
                     /gene="LOC104061480"
                     /coded_by="XM_009563427.2:1..1362"
                     /db_xref="GeneID:104061480"
ORIGIN      
        1 mekacmlcrr veadpdicgr kvekeglcah vfclffangl fhqgsrdgvp lkdirhtikr
       61 aakkscfvcg engatitcre pdcdrsfhlp cameggcvsq ffglyrsfcw ehrpeqlvkv
      121 apeknttcvi cldpvedtks ymtmvcpack hawfhrgciq khaihagthg fccpqcrney
      181 rfrmemltmg iqipkrgpsw edddnyeqly erhsrcdare clfpegreqv eeegpwelll
      241 csscaaegth rrcsflrntt thwecdgcag lgtassasse itgartdsqa glgpshgspa
      301 pqtgtenqea sgpshgplap qtyspgtegt glshgsplle gsnrsgpsgp drlrertrmr
      361 rraqtpytrt rrcressrvp apsaesstss qaalgppnss tatrdhqpqd rkrggirtvp
      421 htntgdqqlw hrkprsfrti prlpgtadqq cqh
//
LOCUS       XP_053911648             659 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: extracellular matrix protein 2-like [Cuculus
            canorus].
ACCESSION   XP_053911648
VERSION     XP_053911648.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055673.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527841) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 3% of CDS bases
            frameshifts :: corrected 3 indels
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..659
                     /product="LOW QUALITY PROTEIN: extracellular matrix
                     protein 2-like"
                     /calculated_mol_wt=73155
     Region          <119..157
                     /region_name="VWC"
                     /note="von Willebrand factor type C domain; cl17735"
                     /db_xref="CDD:450195"
     Region          292..>596
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          314..337
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          338..363
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          364..383
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          385..408
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          409..457
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          458..483
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          484..507
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          508..556
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          557..579
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     CDS             1..659
                     /gene="LOC128850694"
                     /coded_by="XM_054055673.1:1..1980"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon;
                     deleted 2 bases in 2 codons"
                     /db_xref="GeneID:128850694"
ORIGIN      
        1 mqatslvscf llvslciefs hsdtvallgr qrrrmrsrgl prsssaghra paqpgmelpa
       61 pivaaasvll iniedgvmgi fdsliglagq essynvlpgq nghctasrmi lydkavgspk
      121 pcvtslcske vicdtavchp lrcpstilpa geccpicsda aspsdssiis lddtselsgd
      181 vpepteldna nvlpsersht eedellrtev vefkekeghk kxmkrkrkgt khrqkhkahr
      241 rekqpiarqg paeeetpydi heddgtlrmp phspipvppi eapplpagcs tldttvscin
      301 akltqippis dpdltspdlt gngiyaisde afngipnlew idlsknnits pgigpsafkv
      361 lkklkslyld gnllvhvpse lpstleeiki ndnhlraide dglkgmgklv sitrrdhnkf
      421 ekqnvkpnss gllqpelkle nnqieevsei cfnhtrnini ivlkhnklee hriallawin
      481 qgnlesidls ynklyhvpsy lpksllqlvl ignqidripg yvfghmkpgm eylylsfnkl
      541 tddgidlvsf fgayhslrel fldhnelksv pfgidemrkl rflklnnnki rtvppecicr
      601 tqfgdddvre sseeeetves rsehvhlehn yintrqlspr afscrrsycs vvlkpqkik
//
LOCUS       XP_053911649             109 aa            linear   VRT 09-MAR-2023
DEFINITION  centromere protein P-like [Cuculus canorus].
ACCESSION   XP_053911649
VERSION     XP_053911649.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055674.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527841) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 11% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..109
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..109
                     /product="centromere protein P-like"
                     /calculated_mol_wt=12290
     Region          <12..102
                     /region_name="CENP-P"
                     /note="CENP-A-nucleosome distal (CAD) centromere subunit,
                     CENP-P; pfam13096"
                     /db_xref="CDD:289841"
     CDS             1..109
                     /gene="LOC128850695"
                     /coded_by="XM_054055674.1:1..330"
                     /db_xref="GeneID:128850695"
ORIGIN      
        1 mllcnaeqlk kkgkypdivt lqeglqgdyi tlrnplvsgl ellivwkihm deegrttpvl
       61 dlltkvpeqv lehkmvtlrk aprhfrslll llgveaaien lirvvglre
//
LOCUS       XP_053911650             516 aa            linear   VRT 09-MAR-2023
DEFINITION  pineapple eye protein-like [Cuculus canorus].
ACCESSION   XP_053911650
VERSION     XP_053911650.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055675.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527841) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 32% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..516
                     /product="pineapple eye protein-like"
                     /calculated_mol_wt=55388
     Region          <35..101
                     /region_name="PHD_SF"
                     /note="PHD finger superfamily; cl22851"
                     /db_xref="CDD:473978"
     Site            order(54,64..67,73,96)
                     /site_type="other"
                     /note="histone H3 binding site [polypeptide binding]"
                     /db_xref="CDD:276966"
     Region          117..166
                     /region_name="RING-H2"
                     /note="H2 subclass of RING (RING-H2) fingers and its
                     variants; cd16448"
                     /db_xref="CDD:438112"
     Region          204..257
                     /region_name="PHD_SF"
                     /note="PHD finger superfamily; cl22851"
                     /db_xref="CDD:473978"
     Site            order(204,227..230,234,252)
                     /site_type="other"
                     /note="histone H3 binding site [polypeptide binding]"
                     /db_xref="CDD:276966"
     Region          <248..504
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     CDS             1..516
                     /gene="LOC128850697"
                     /coded_by="XM_054055675.1:55..1605"
                     /db_xref="GeneID:128850697"
ORIGIN      
        1 mpnllkakad fsvdpemkhf andlfipetn qsallagylp qdilrtvera agqrcfvcse
       61 sgaavtcqep gcdrsfhlpc ameggcinqy lpeyrsfcwe hrpeqlarva peknttcvic
      121 ldpvedtmsy mtmvcpackh awfhrgciqg qavwddiysf rcplcrdees flaemlvmgi
      181 rvhlrrpsae ssedmealia rhsrcdasec lcpggreqva ehgrwelllc sscaaegthr
      241 rcsflrnttt hwecdgcagl gtassassei tgartdsqag lgpshgspap etgtesqeas
      301 rpsqgsqapq tdspgtegtg lsrgspaveg ssrssppgpd rlrertrrrr qaqtpytrrr
      361 rgressrvpa psaesstssq aalgppnsst vpettsprte sqevsgqslt spletsnpst
      421 esqeasgpsq gsqapqtsss tlvcqlrphl pamgldtara hnalrgdccl ssqalpsysa
      481 gpepaeepgs epqrsvpgtv plstalesre ksrsaq
//
LOCUS       XP_053911651             275 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein J1-B-like [Cuculus canorus].
ACCESSION   XP_053911651
VERSION     XP_053911651.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055676.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527841) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 4% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..275
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..275
                     /product="forkhead box protein J1-B-like"
                     /calculated_mol_wt=30331
     Region          <14..53
                     /region_name="Forkhead"
                     /note="Forkhead domain; pfam00250"
                     /db_xref="CDD:459732"
     CDS             1..275
                     /gene="LOC128850698"
                     /coded_by="XM_054055676.1:1..828"
                     /db_xref="GeneID:128850698"
ORIGIN      
        1 mmvstmvlpr vatnsirhnl ssnkcfikvp rekgkpgrgg fwkldlqytd rlksgafkkq
       61 rmhpvqihsa stekaqqeaq vdaspatsgc askkvfsvsm esqqlleefe efiknqnrka
      121 vdvkaglkrk qplpkqmakv crlsscallt qeeqtqlgsl kgdldmdlhl nrefstsgdl
      181 evtppvspkk rnpevmvhgq hvdcpqgleq vldesnqndl sldescmaas flqhlfdegt
      241 sdslcnavnv eqlfdindis vpadgsdwss lasll
//
LOCUS       XP_053911653             165 aa            linear   VRT 09-MAR-2023
DEFINITION  centromere protein P-like [Cuculus canorus].
ACCESSION   XP_053911653
VERSION     XP_053911653.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055678.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527841) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 41% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..165
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..165
                     /product="centromere protein P-like"
                     /calculated_mol_wt=18463
     Region          <70..158
                     /region_name="CENP-P"
                     /note="CENP-A-nucleosome distal (CAD) centromere subunit,
                     CENP-P; pfam13096"
                     /db_xref="CDD:289841"
     CDS             1..165
                     /gene="LOC128850699"
                     /coded_by="XM_054055678.1:1..498"
                     /db_xref="GeneID:128850699"
ORIGIN      
        1 measppgrvt pqatettrea dnlekhdssn ryqvsstlqn lptkcplvlq gqrliqllsg
       61 wqdkeadlgk ypdivtlqeg lqgdyitlrn plvsglelli vwkihmdeeg rttpvldllt
      121 kvpeqvlehk mvtlrkaprh frslllllgv eaaienlirv vglre
//
LOCUS       XP_053911654             360 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/arginine repetitive matrix protein 1-like [Cuculus canorus].
ACCESSION   XP_053911654
VERSION     XP_053911654.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055679.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527841) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 100% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..360
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..360
                     /product="serine/arginine repetitive matrix protein
                     1-like"
                     /calculated_mol_wt=37162
     CDS             1..360
                     /gene="LOC128850700"
                     /coded_by="XM_054055679.1:1..1083"
                     /db_xref="GeneID:128850700"
ORIGIN      
        1 mgkeygdmvr yrqreriwae iqakrlairr gtttdpraaa easrpftrss vpkrrrggte
       61 grgpsersar gaaaalrhar pgqngprgsl paahpaaeaa eplvgqrell pplqdgleev
      121 ageaaatlrh tapgngtcpk ghtaaaaapq rtrrrppkdt ppppkghaaa pqrtrrrrpp
      181 kdtpppppkg haaaapqrtr rrrppkdtpp pparfcfalp rpsrarekll parrgagaaa
      241 rigaaaghhg sggkasgaas gaaaamsgvg sgafgrlgrr rgrpllrsra gppapfpgrg
      301 aarallaprr vgpaafansa gaasrggswa agpecgahgw qaappgsars shrpqrggar
//
LOCUS       XP_053911655             218 aa            linear   VRT 09-MAR-2023
DEFINITION  A-kinase anchor protein 13-like [Cuculus canorus].
ACCESSION   XP_053911655
VERSION     XP_053911655.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055680.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527841) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 32% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..218
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..218
                     /product="A-kinase anchor protein 13-like"
                     /calculated_mol_wt=24890
     CDS             1..218
                     /gene="LOC128850701"
                     /coded_by="XM_054055680.1:1..657"
                     /db_xref="GeneID:128850701"
ORIGIN      
        1 mkkralspke gqkeevrekd psvrpkvglp erlpisskee crgsgtsssl ppamstkpst
       61 sperrkknem eawekelvek egrlaqreeq lqrwwqdher ecqelqleka sfqvkwqsqi
      121 sglqeklirv psesgvaess keksparpqq ghvdsepsis pernsllrtl kekspfrshg
      181 ttkqthqaae eqprrqtass aqpkprrsrk rgkrdrds
//
LOCUS       XP_053911656             213 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: uridine phosphorylase 1-like [Cuculus
            canorus].
ACCESSION   XP_053911656
VERSION     XP_053911656.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055681.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527841) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 9% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..213
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..213
                     /product="LOW QUALITY PROTEIN: uridine phosphorylase
                     1-like"
                     /calculated_mol_wt=22905
     Region          20..>198
                     /region_name="NP-I"
                     /note="nucleoside phosphorylase-I family; cl00303"
                     /db_xref="CDD:444819"
     CDS             1..213
                     /gene="LOC128850702"
                     /coded_by="XM_054055681.1:1..642"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon"
                     /db_xref="GeneID:128850702"
ORIGIN      
        1 mlkignfihl cnphleetke dipynfalgt vthdflalfg dvkflcvggn psqvktfiay
       61 vaeelglgsp gsdypnixdh yavckvgpvl svrhgmgips isimlhelik llyhakcsnv
      121 tiihvgtcgg iglepgsvvi tqqsggatfk pqfeqvvlgk tvirstnlde qlakelrqcr
      181 kevrqfntgi gntrstldcs ggeasnslte vyw
//
LOCUS       XP_053911658              89 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase RBBP6-like [Cuculus canorus].
ACCESSION   XP_053911658
VERSION     XP_053911658.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055683.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527841) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 10% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..89
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..89
                     /product="E3 ubiquitin-protein ligase RBBP6-like"
                     /calculated_mol_wt=9997
     Region          4..76
                     /region_name="DWNN"
                     /note="DWNN domain; pfam08783"
                     /db_xref="CDD:462603"
     CDS             1..89
                     /gene="LOC128850703"
                     /coded_by="XM_054055683.1:1..270"
                     /db_xref="GeneID:128850703"
ORIGIN      
        1 mpcihykffs rlnydtisfs gldislgdlk hqimsreklk vsrcelqisn aqtgeeytde
       61 ntlvprnssv ivrripaagv kvarkrcvp
//
LOCUS       XP_053911659             502 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 36-like [Cuculus canorus].
ACCESSION   XP_053911659
VERSION     XP_053911659.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055684.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527841) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 34% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..502
                     /product="ubiquitin carboxyl-terminal hydrolase 36-like"
                     /calculated_mol_wt=56541
     Region          137..437
                     /region_name="Peptidase_C19E"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02661"
                     /db_xref="CDD:239126"
     Site            order(142,147,398,415)
                     /site_type="active"
                     /db_xref="CDD:239126"
     CDS             1..502
                     /gene="LOC128850704"
                     /coded_by="XM_054055684.1:1..1509"
                     /db_xref="GeneID:128850704"
ORIGIN      
        1 mpppvsprsa pvppreaerg dtgrvrwrrs pvrsgdtcae rrrrgsppgs aiaieehlef
       61 gkdgrelhqe latpfqaprq kkmevepteh stseqlnrlq gsehvpqmqg dgiplpkkvl
      121 fpverlsmqw qrthqigagl knlgntcfln stvqcltytp planyllsre hsrtcqqgef
      181 cmlcimekhi lqvfsssgsa iqptafvrni kkiathirlg rqedahefls ftinamqrac
      241 ldgctqldhq sqtttlvhqi fggflrsrvm ckvcnwpsdt yepfldlave ieeaesieqa
      301 lklfvrpeml ceenaymcdk cktkvqaikr fsihrassvl ivslkrfsif sggkikkdvt
      361 ypevldirpy lsedkgdpmn yelyavlvhs gyscrsghyy cyvkasdgqw yqmndavvcl
      421 tnlkvvlnqq ayvlfyvrtp gtsksfeepi akavsiapsq pvmgqvspda rflgaaatlq
      481 gqglqlwrkv gtredrlqer pc
//
LOCUS       XP_053911660             214 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850705 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911660
VERSION     XP_053911660.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055685.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527841) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..214
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..214
                     /product="uncharacterized protein LOC128850705 isoform X1"
                     /calculated_mol_wt=23821
     CDS             1..214
                     /gene="LOC128850705"
                     /coded_by="XM_054055685.1:1239..1883"
                     /db_xref="GeneID:128850705"
ORIGIN      
        1 merslfgtaf ttvligrsrl eyftgaaffc lftdvagdde spasrlsprd dvqghrmdlh
       61 gakykakvmk tsqqltemle ellarlkkan rgegggnvis sdqmevglep vaqpggefqi
      121 slslkehtrt lgqelipcnf pldpltaddf ptswpilsss lraitqkwtk kvcqrlrkra
      181 vtrcpslpre kvwaarqpqg ftrvlqvfkg dkht
//
LOCUS       XP_053911661             214 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850705 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911661
VERSION     XP_053911661.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055686.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527841) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..214
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..214
                     /product="uncharacterized protein LOC128850705 isoform X1"
                     /calculated_mol_wt=23821
     CDS             1..214
                     /gene="LOC128850705"
                     /coded_by="XM_054055686.1:1239..1883"
                     /db_xref="GeneID:128850705"
ORIGIN      
        1 merslfgtaf ttvligrsrl eyftgaaffc lftdvagdde spasrlsprd dvqghrmdlh
       61 gakykakvmk tsqqltemle ellarlkkan rgegggnvis sdqmevglep vaqpggefqi
      121 slslkehtrt lgqelipcnf pldpltaddf ptswpilsss lraitqkwtk kvcqrlrkra
      181 vtrcpslpre kvwaarqpqg ftrvlqvfkg dkht
//
LOCUS       XP_053911662             190 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850705 isoform X2 [Cuculus canorus].
ACCESSION   XP_053911662
VERSION     XP_053911662.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055687.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527841) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..190
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..190
                     /product="uncharacterized protein LOC128850705 isoform X2"
                     /calculated_mol_wt=20966
     CDS             1..190
                     /gene="LOC128850705"
                     /coded_by="XM_054055687.1:1239..1811"
                     /db_xref="GeneID:128850705"
ORIGIN      
        1 merslfgtaf ttvligrsrl eyftgaaffc lftdvagdde spasrlsprd dvqghrmdlh
       61 gakykakvmk tsqqltemle ellarlkkan rgegggnvis sdqmevglep vaqpgdplta
      121 ddfptswpil ssslraitqk wtkkvcqrlr kravtrcpsl prekviavpw spsvthqegg
      181 srsegreswe
//
LOCUS       XP_053911663             204 aa            linear   VRT 09-MAR-2023
DEFINITION  protein ELYS-like [Cuculus canorus].
ACCESSION   XP_053911663
VERSION     XP_053911663.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055688.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527841) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..204
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..204
                     /product="protein ELYS-like"
                     /calculated_mol_wt=23129
     CDS             1..204
                     /gene="LOC128850706"
                     /coded_by="XM_054055688.1:349..963"
                     /db_xref="GeneID:128850706"
ORIGIN      
        1 mlqslqhcqc llnnlggvld clqreqqelt dkdlrnrqml asnfsvhart viwfcqsgll
       61 pegsdgtmhl stpfynypll htcytgqrqr lehlsrgkcd snclmingiv shigdqlakl
      121 wqkekggtgk ypppslsall dlcllesiee pykhaivsfl vilnapqdmy knvlkclspt
      181 clrrdfnlll khkaseniwf riks
//
LOCUS       XP_053911664             859 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850707 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911664
VERSION     XP_053911664.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055689.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527841) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..859
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..859
                     /product="uncharacterized protein LOC128850707 isoform X1"
                     /calculated_mol_wt=97737
     CDS             1..859
                     /gene="LOC128850707"
                     /coded_by="XM_054055689.1:2077..4656"
                     /db_xref="GeneID:128850707"
ORIGIN      
        1 mahkiligsf llfcitpptc nqhntgwpws qafiehssfl gnypkdrhpn lavivmhdde
       61 aylapewvwd gterirtlsg iidekiqvgc rkvesgfqne rassisvrgn flnlnitski
      121 hpgiseklcp tedwkctrqd tfilccrqkf tgnntswdpn dinvevtksc kkeqgdcwln
      181 ftmvnpisvv cnwkpdpktr ptllgltqkf rvvavtkpkl vailihqdrd isfvlnskea
      241 isfftvapge disvrcqlma eslvepvnsy gigprdfils crtqgmncwl nftavktsyk
      301 vvcgknntrh wgeliikvlt pttppkvtlq pkiyeigpfv vgntgqqqml fkpewslkrv
      361 ellmqnnvse iqpactpflh tsyegwttwl rrssqrritr dltgvlgtrl gvlnsidsev
      421 lmnklattty dlakmqqplr ssllalgthq wllsnilpkw ekmnvkdhkl ildtlgvaqs
      481 nislalsciq aqlwmqtvaa siiregeegi fpteirkiiw dnannfeqnl qswwklvnft
      541 ydpvnnvvta yvltihnasv fliypvyalg lnhngtilyp fehrawaqrv ndkwqtvdle
      601 scivreqlgv icennairtq dfcldtdqkv chfevrpean trtviiyign gcvclrticn
      661 nitvgnvivy tnnhtnfcvc nfteiigcdf sysapvtshq ilksnltlih eiipvsigmn
      721 tnhtkelvqh qdyiqileei kkngqktlit vhhsvdklqr imkkvksdge hnwwdtlfgw
      781 sptatgilnk lchpivvlli lslvsiilsv tlyifnwrmi krmrilsstl ntrkslnvis
      841 nidipksidi eqavwqkvm
//
LOCUS       XP_053911665             859 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850707 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911665
VERSION     XP_053911665.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055690.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527841) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..859
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..859
                     /product="uncharacterized protein LOC128850707 isoform X1"
                     /calculated_mol_wt=97737
     CDS             1..859
                     /gene="LOC128850707"
                     /coded_by="XM_054055690.1:613..3192"
                     /db_xref="GeneID:128850707"
ORIGIN      
        1 mahkiligsf llfcitpptc nqhntgwpws qafiehssfl gnypkdrhpn lavivmhdde
       61 aylapewvwd gterirtlsg iidekiqvgc rkvesgfqne rassisvrgn flnlnitski
      121 hpgiseklcp tedwkctrqd tfilccrqkf tgnntswdpn dinvevtksc kkeqgdcwln
      181 ftmvnpisvv cnwkpdpktr ptllgltqkf rvvavtkpkl vailihqdrd isfvlnskea
      241 isfftvapge disvrcqlma eslvepvnsy gigprdfils crtqgmncwl nftavktsyk
      301 vvcgknntrh wgeliikvlt pttppkvtlq pkiyeigpfv vgntgqqqml fkpewslkrv
      361 ellmqnnvse iqpactpflh tsyegwttwl rrssqrritr dltgvlgtrl gvlnsidsev
      421 lmnklattty dlakmqqplr ssllalgthq wllsnilpkw ekmnvkdhkl ildtlgvaqs
      481 nislalsciq aqlwmqtvaa siiregeegi fpteirkiiw dnannfeqnl qswwklvnft
      541 ydpvnnvvta yvltihnasv fliypvyalg lnhngtilyp fehrawaqrv ndkwqtvdle
      601 scivreqlgv icennairtq dfcldtdqkv chfevrpean trtviiyign gcvclrticn
      661 nitvgnvivy tnnhtnfcvc nfteiigcdf sysapvtshq ilksnltlih eiipvsigmn
      721 tnhtkelvqh qdyiqileei kkngqktlit vhhsvdklqr imkkvksdge hnwwdtlfgw
      781 sptatgilnk lchpivvlli lslvsiilsv tlyifnwrmi krmrilsstl ntrkslnvis
      841 nidipksidi eqavwqkvm
//
LOCUS       XP_053911666             468 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850707 isoform X2 [Cuculus canorus].
ACCESSION   XP_053911666
VERSION     XP_053911666.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055691.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527841) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..468
                     /product="uncharacterized protein LOC128850707 isoform X2"
                     /calculated_mol_wt=53185
     Region          60..145
                     /region_name="RT_RNaseH_2"
                     /note="RNase H-like domain found in reverse transcriptase;
                     pfam17919"
                     /db_xref="CDD:465567"
     Region          243..380
                     /region_name="RNase_H_like"
                     /note="Ribonuclease H-like superfamily, including RNase H,
                     HI, HII, HIII, and RNase-like domain IV of spliceosomal
                     protein Prp8; cl14782"
                     /db_xref="CDD:449355"
     CDS             1..468
                     /gene="LOC128850707"
                     /coded_by="XM_054055691.1:1..1407"
                     /db_xref="GeneID:128850707"
ORIGIN      
        1 mtcippdtlt sldqikmpes kkelqhalgl lvfwrkhipd fsivarplyd llrkgakwew
       61 tsvqdealql lvfeatahqa lgpihptdpf qvewgfsssg lsvhlwqrgp dgptrpvgfy
      121 srsfkdaekr ytawekglfv vslalievek itrnqsivlr gpfkvirpit agtpppdgva
      181 qkasvrkwya qiehycnvfs vtegasknls iqeteslens pdkpasvirv appfsqdqtv
      241 nawftdasak regkvwkyra aalhtssdeq iiteglgsaq vgeliavwsv fqreaqttsp
      301 vhiytdsyav fkgctewlpf weqnewevnr vpvwqkekwq eilkiarqgn favgwvashq
      361 tdggtagewn nradelarla piqkdqtsen werllewlhv krkhtgakdl yrealargwp
      421 vtremcktci saceqcrirl erhpleddpl hlreeeprgt lrisiegt
//
LOCUS       XP_053911667             430 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein J1-like [Cuculus canorus].
ACCESSION   XP_053911667
VERSION     XP_053911667.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055692.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527841) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..430
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..430
                     /product="forkhead box protein J1-like"
                     /calculated_mol_wt=47131
     Region          <40..>243
                     /region_name="COG5025"
                     /note="Transcription factor of the Forkhead/HNF3 family
                     [Transcription]"
                     /db_xref="CDD:227358"
     Region          123..200
                     /region_name="FH_FOXJ1"
                     /note="Forkhead (FH) domain found in Forkhead box protein
                     J1 (FOXJ1) and similar proteins; cd20023"
                     /db_xref="CDD:410797"
     Site            order(128,146..147,150,169..170,172..173,176,183,193..195,
                     197)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410797"
     CDS             1..430
                     /gene="LOC128850708"
                     /coded_by="XM_054055692.1:125..1417"
                     /db_xref="GeneID:128850708"
ORIGIN      
        1 maegrlsheq agkdrgqegi vrelphkdds vpnltwlldf sipsastgns sccpsgpdlh
       61 ncqgmpsfav pcsplgtdpa cvgtphtpcv pvssstskte hhigtmhaql tesidyksnp
      121 yvkppysyaa licmamease ephitlsaiy kwisdnfgyf rqadpawkns irhnlssnkc
      181 fikvprekgk pgrggfwkld lqytdrlksg afkkqrmhpv qihsasteka qqeaqvdasp
      241 atsgcaskkv fsvsmesqql leefeefikn qnrkavdvka glkrkqplpk qmakvcrlss
      301 calltqeeqt qlgslkgdld mdlhlnrefs tsgdlevtpp vspkkrnpev mvhgqhvdcp
      361 qgleqvldes nqndlsldes cmaasflqhl fdegtsdslc navnveqlfd indisvpadg
      421 sdwsslasll
//
LOCUS       XP_053911669             429 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: forkhead box protein J1-like [Cuculus
            canorus].
ACCESSION   XP_053911669
VERSION     XP_053911669.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055694.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527841) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..429
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..429
                     /product="LOW QUALITY PROTEIN: forkhead box protein
                     J1-like"
                     /calculated_mol_wt=46820
     Region          <75..>244
                     /region_name="COG5025"
                     /note="Transcription factor of the Forkhead/HNF3 family
                     [Transcription]"
                     /db_xref="CDD:227358"
     Region          124..201
                     /region_name="FH_FOXJ1"
                     /note="Forkhead (FH) domain found in Forkhead box protein
                     J1 (FOXJ1) and similar proteins; cd20023"
                     /db_xref="CDD:410797"
     Site            order(129,147..148,151,170..171,173..174,177,184,194..196,
                     198)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410797"
     CDS             1..429
                     /gene="LOC104063977"
                     /coded_by="XM_054055694.1:1..1290"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     substituted 1 base at 1 genomic stop codon"
                     /db_xref="GeneID:104063977"
ORIGIN      
        1 maegrlsheq agkdrgqegi vresphkhds lpnltwllgf sitstsmgns sccpsgpdlh
       61 nxyegipsfa vpcsplgtdp acvgtphtpc vpvssstskt ehhigsmhtq lvegidyksn
      121 pyvkppysyt tlicmameas eephitlsai ykwisdnfgy frqadpawkn sirhnlssnk
      181 cfikvpqekg kpgrggfxkl dlqyadrlks gafkkqrmrp vqihpastek aqqeaqrdss
      241 patsgcaskk vfsvsmesqq lleefeefik nqnrkavdvk aglkrkqplp kqmakvcrls
      301 scalltqeeq tqlgslkgdl dtdlnrdfst sgdlevtpsv spkkhnpevm vhgqhvdcpq
      361 gleqvlaesn qnnlsldesc maasflqhlf degtsdcltn afnveqffdi ndisvpadgs
      421 dwsslasll
//
LOCUS       XP_053911670             363 aa            linear   VRT 09-MAR-2023
DEFINITION  PHD finger protein 7-like, partial [Cuculus canorus].
ACCESSION   XP_053911670
VERSION     XP_053911670.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055695.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527841) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 19% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the amino end.
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         <1..363
                     /product="PHD finger protein 7-like"
     Region          <17..83
                     /region_name="PHD_SF"
                     /note="PHD finger superfamily; cl22851"
                     /db_xref="CDD:473978"
     Site            order(36,46..49,55,78)
                     /site_type="other"
                     /note="histone H3 binding site [polypeptide binding]"
                     /db_xref="CDD:276966"
     Region          99..148
                     /region_name="RING-H2"
                     /note="H2 subclass of RING (RING-H2) fingers and its
                     variants; cd16448"
                     /db_xref="CDD:438112"
     Region          187..239
                     /region_name="PHD_SF"
                     /note="PHD finger superfamily; cl22851"
                     /db_xref="CDD:473978"
     Site            order(209..212,216,234)
                     /site_type="other"
                     /note="histone H3 binding site [polypeptide binding]"
                     /db_xref="CDD:276966"
     CDS             1..363
                     /gene="LOC128850710"
                     /coded_by="XM_054055695.1:<1..1092"
                     /db_xref="GeneID:128850710"
ORIGIN      
        1 hfandlfipe tnqsallagy lpqdilrtve raagqrcfvc sesraavtcq epgcdrsfhl
       61 pcameggcin qylpeyrsfc wehrpeqlar vapeknttcv icldpvedtm symtmvcpac
      121 khawfhrgci qgqavwddiy sfccplcrde esflaemlvm girvplrrps aesskdieal
      181 iarhsccdas eclcpggreq vaehgrwell lcsscaaegt hrrcsflrnt tthwecdgca
      241 glgtassass eitgartdsq aglgpshgsp apetgtesqe gssrssppgp drlrertrrr
      301 rqaqtpytrr rrgressrvp apsaesstss qaalgppnss tvpettnprt esqevsgqsd
      361 itt
//
LOCUS       XP_053911671             505 aa            linear   VRT 09-MAR-2023
DEFINITION  glycosylphosphatidylinositol anchor attachment 1 protein-like,
            partial [Cuculus canorus].
ACCESSION   XP_053911671
VERSION     XP_053911671.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055696.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527842) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the carboxy end.
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..>505
                     /product="glycosylphosphatidylinositol anchor attachment 1
                     protein-like"
     Region          126..>500
                     /region_name="Gaa1"
                     /note="Gaa1-like, GPI transamidase component; pfam04114"
                     /db_xref="CDD:461181"
     CDS             1..505
                     /gene="LOC128850712"
                     /coded_by="XM_054055696.1:1..>1516"
                     /db_xref="GeneID:128850712"
ORIGIN      
        1 mgllsdpqcr ralaclvlrl nnplcspsal syalglawfl alppaaprth isenamgstm
       61 veetfsggar aiafardfaa hkkktgalpv awlektmwsl glevhqqtfa ctlpfpdear
      121 erylvkgtnv ygilrapraa stealvlsas cadgatnnhg vglllalagt frgqifwakd
      181 iiflvhehdl lgmeawlqgy hdvnltemss sgtpgragai qaaialelss dvvtsldvav
      241 eglngqlpnl dllnlfhafc qkngllctiq gklprsewds lpaythslqt lllmvlaqas
      301 gqprgnhglf lryriealtl rginsfrqyk ydmttvgktl egmfrklnnl lerlhqsyff
      361 yllpslsrfi sigvympafg flilvlilka lelwmklnkw epgsgerlcd gsggageepl
      421 pgllplvppv lvshaagvai yflpvlgqhi atqhfpvaea eavvltviai yvagmalphn
      481 thrsascgdr gwmalkllsi rdgfw
//
LOCUS       XP_053911673             141 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein-like [Cuculus canorus].
ACCESSION   XP_053911673
VERSION     XP_053911673.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055698.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527843) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..141
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..141
                     /product="hydrocephalus-inducing protein-like"
                     /calculated_mol_wt=15310
     CDS             1..141
                     /gene="LOC128850713"
                     /coded_by="XM_054055698.1:211..636"
                     /db_xref="GeneID:128850713"
ORIGIN      
        1 mllhvplwtd sktvvlhnpt plpvacrirg leglgegfsv sqdagiigpc seygmrlcfe
       61 atkvdsikkt fqvevsdaek llgivrvesi qvfaeaydig ldinvsagrg yvdfgalkil
      121 geakqvltlk nrgkyeivyr p
//
LOCUS       XP_053911674             141 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein-like [Cuculus canorus].
ACCESSION   XP_053911674
VERSION     XP_053911674.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055699.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527843) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..141
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..141
                     /product="hydrocephalus-inducing protein-like"
                     /calculated_mol_wt=15310
     CDS             1..141
                     /gene="LOC128850713"
                     /coded_by="XM_054055699.1:211..636"
                     /db_xref="GeneID:128850713"
ORIGIN      
        1 mllhvplwtd sktvvlhnpt plpvacrirg leglgegfsv sqdagiigpc seygmrlcfe
       61 atkvdsikkt fqvevsdaek llgivrvesi qvfaeaydig ldinvsagrg yvdfgalkil
      121 geakqvltlk nrgkyeivyr p
//
LOCUS       XP_053911675             305 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14J1-like [Cuculus canorus].
ACCESSION   XP_053911675
VERSION     XP_053911675.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055700.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527844) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="olfactory receptor 14J1-like"
                     /calculated_mol_wt=33543
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..305
                     /gene="LOC128850715"
                     /coded_by="XM_054055700.1:1..918"
                     /db_xref="GeneID:128850715"
ORIGIN      
        1 msnsssitqf lllafadrre lqllhfwlfl giylaallgn gliittivcd hhlhtpmyff
       61 llnlslldlg sisptvpkam anslwdtrti syigcvaqlf tflffitael slltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgaa flnallhtan tfslplcqgn aveqffceip
      181 hilklscshs ylreaglsvf gaclafgcfi fivvsyvqif ravlripleq gqhkafstcl
      241 phlavvslfi stagfaylkp lsisspsldl vvsvlyvvvp palnpliysl rnqqlkdavw
      301 klisg
//
LOCUS       XP_053911676             306 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14C36-like [Cuculus canorus].
ACCESSION   XP_053911676
VERSION     XP_053911676.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055701.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527844) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..306
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..306
                     /product="olfactory receptor 14C36-like"
                     /calculated_mol_wt=33877
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..306
                     /gene="LOC128850716"
                     /coded_by="XM_054055701.1:1..921"
                     /db_xref="GeneID:128850716"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliitttacd hhlhtpmyff
       61 lfnlsildvg sistilpksm anslwntrei sytgcasqvf lyvffisaey flltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgaa flnallhtan tfslplcqgn aveqffceip
      181 hilklscshs ylreagisvl svclgfgcfv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvslfi stvafaylkp psisspsldl vvsvlysvvp palnpfiysl rnkelkdavw
      301 klltfl
//
LOCUS       XP_053911677             287 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14J1-like, partial [Cuculus canorus].
ACCESSION   XP_053911677
VERSION     XP_053911677.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055702.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527844) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: incomplete on the carboxy end.
FEATURES             Location/Qualifiers
     source          1..287
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..>287
                     /product="olfactory receptor 14J1-like"
     Region          23..287
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..287
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..287
                     /gene="LOC128850717"
                     /coded_by="XM_054055702.1:1..>861"
                     /db_xref="GeneID:128850717"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittivyd hhlhtpmyff
       61 llnlsildlg sisttlpksm anslwdtrgi shagcvaqff lflffiaaey flltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgaa flnallhtan tfslplcqgn aveqffceip
      181 hilklscshs ylreagisvf avclafgcfv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvsvfi stggfayvkp sslsspsldl vvsflysvvp palnpli
//
LOCUS       XP_053911678             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14J1-like [Cuculus canorus].
ACCESSION   XP_053911678
VERSION     XP_053911678.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055703.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527844) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14J1-like"
                     /calculated_mol_wt=34819
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850718"
                     /coded_by="XM_054055703.1:25..981"
                     /db_xref="GeneID:128850718"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittitcd hhlhtpmyff
       61 llnlsildlg sisttlpksm gnslwdtrai shagcvaqdf lflffisaey slltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgaa fltallhtan tfslplcqgn aveqffceip
      181 qilklscshs ylreagisvf alclafgcfv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvslfi stagfaylkp psisspsldl vvsvlysvvp palnpliysl rnqqlkdavw
      301 klisgwvpea kncsscsa
//
LOCUS       XP_053911679             305 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14J1-like [Cuculus canorus].
ACCESSION   XP_053911679
VERSION     XP_053911679.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055704.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527844) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="olfactory receptor 14J1-like"
                     /calculated_mol_wt=33483
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..305
                     /gene="LOC128850719"
                     /coded_by="XM_054055704.1:28..945"
                     /db_xref="GeneID:128850719"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittitcd hhlhtsmnff
       61 llnlalldmg sisttipksm anslwntrai symgcvaqvf fflslfgaey slltvmsydr
      121 yvaickplhy gtllgsracv hmaaaawgaa flnallhtan tfslplchgn avdqffceip
      181 hilklscshs ylreagisvf svclafgcfv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvsvfi stagfaylkp psisspsldl vvsflysvvp palnpliysl rnqqlkdavw
      301 klmsg
//
LOCUS       XP_053911680             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911680
VERSION     XP_053911680.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055705.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527844) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=35175
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850720"
                     /coded_by="XM_054055705.1:1..957"
                     /db_xref="GeneID:128850720"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittitcd hhlhnpmyff
       61 lfslsildlg sistivpksm anflwgtrsi sytgcasqvf lflffisaey flltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgaa flnallhman tfslplcqgn aveqffceip
      181 hilklscshs ylreaapsvl svclgfvcfv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvslfi stvafaylkp rsisspsldl vvsvlysvvp palnpliysl rnkelkdavw
      301 klisgwvsea kncssria
//
LOCUS       XP_053911681             305 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911681
VERSION     XP_053911681.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055706.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527844) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=33708
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..305
                     /gene="LOC128850721"
                     /coded_by="XM_054055706.1:1..918"
                     /db_xref="GeneID:128850721"
ORIGIN      
        1 msnsssitqf lllkftdtre lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 llnlsildlg sistivpksm snslwdnrti sytgcvaqvf lyvffiaaey slltvmsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flyallhtan tfslplcqgn avdqffceip
      181 hilklsclda slreveilil scllsfgcfv fivvsyvqif ravlripseq gwhkafstcl
      241 phlavvslfl stgviaylkp psisspsldl vmsvlysvfp palnpliysl rnkdlkgavw
      301 nlisg
//
LOCUS       XP_053911683             155 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14J1-like, partial [Cuculus canorus].
ACCESSION   XP_053911683
VERSION     XP_053911683.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055708.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527844) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the amino end.
FEATURES             Location/Qualifiers
     source          1..155
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         <1..155
                     /product="olfactory receptor 14J1-like"
     Region          <1..142
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          14..30
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          67..90
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          109..131
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..155
                     /gene="LOC128850725"
                     /coded_by="XM_054055708.1:<1..468"
                     /db_xref="GeneID:128850725"
ORIGIN      
        1 lhygtllgsr acvhmaaaaw gaaflnallh tadtfflplc qgnaveqffc eiphilklsc
       61 shsylreagp svlsvclgfv cfvfivvsyv qifravlrip seqgrhkafs tclphlavvs
      121 lfistvafay lkprsissps ldlvvsvlys vvppa
//
LOCUS       XP_053911684             236 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14J1-like, partial [Cuculus canorus].
ACCESSION   XP_053911684
VERSION     XP_053911684.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055709.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527844) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 35% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the amino end.
FEATURES             Location/Qualifiers
     source          1..236
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         <1..236
                     /product="olfactory receptor 14J1-like"
     Region          <1..154
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          14..30
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          67..90
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          109..131
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..236
                     /gene="LOC128850726"
                     /coded_by="XM_054055709.1:<1..711"
                     /db_xref="GeneID:128850726"
ORIGIN      
        1 lhygtllgsr acvhtaaaaw gaafltallh tantfslplc qgnaveqffc eipqilklsc
       61 shsylreagi svfalclafg cfvfivvsyv qifravlrip seqgrhkafs tclphlavvs
      121 vfistagvay lkppsissps ldlvvsflys vvppeqtppa qrdpsqlpwt gsvqaflsdr
      181 vevsglkkwt lcgklaegps pnvisgtksp csqlfvpsps dqhsvstvkc lhynpv
//
LOCUS       XP_053911685             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911685
VERSION     XP_053911685.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055710.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527844) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=34908
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850727"
                     /coded_by="XM_054055710.1:25..981"
                     /db_xref="GeneID:128850727"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 llnlsaldlg sistivpksm anslwdtrti syagcasqff vflffiaaey slltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgaa flnallhtan tfslplcqgn aveqffceip
      181 hilklscshs ylrevgllgv safvafgcfv fivvsyvqif rsvlripseq grhkafstcl
      241 phlavvslfv stgvfaylkp psisspsldl vvsflysvvp palnpliysl rnqqlkdavw
      301 klisgwvsea inysscsa
//
LOCUS       XP_053911686             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911686
VERSION     XP_053911686.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055711.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527844) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=35088
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850728"
                     /coded_by="XM_054055711.1:1..957"
                     /db_xref="GeneID:128850728"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl siylaallgn gliittitcd hhlhtpmyff
       61 lfslsildlg sistivpksm anflwgtrsi sytgcasqvf lflffisaey flltvmsydr
      121 yvaickplhy gtllgsracv hmaaaawgaa flnallhtan tfslplcqgn avdqffcetp
      181 qilklscshs ylredgpsvl svclgfgcfv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvslfv stvvfaylkp psisspsldl vvsvlysvvp palnpfiysl rnqqlkdavw
      301 klisgwvsea kncssria
//
LOCUS       XP_053911688             305 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911688
VERSION     XP_053911688.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055713.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527844) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=33698
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..305
                     /gene="LOC128850731"
                     /coded_by="XM_054055713.1:1..918"
                     /db_xref="GeneID:128850731"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittiicd hhlhtpmyff
       61 lfslslldlg slstivpksm anslwdirti syagcasqvf lflffisaey flltvmsydr
      121 yvaickplhy gtllgsracv hmaaaawgaa fltallhtan tfslplcqgn aveqffcetp
      181 qilklscshs ymrevglvgi iaclffvcfi fivvsyvqif rivlripseq grqkvfstcl
      241 phlavvslfv sngvfaylkp ssvsapsldl vvavlysvvp pamnpviysl rnkdlkdavw
      301 klisg
//
LOCUS       XP_053911689             310 aa            linear   VRT 09-MAR-2023
DEFINITION  drebrin-like protein [Cuculus canorus].
ACCESSION   XP_053911689
VERSION     XP_053911689.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055714.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527845) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..310
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..310
                     /product="drebrin-like protein"
                     /calculated_mol_wt=34863
     Region          27..>74
                     /region_name="ALP_like"
                     /note="alkaline phosphatases and sulfatases; cl23718"
                     /db_xref="CDD:474031"
     CDS             1..310
                     /gene="LOC128850733"
                     /coded_by="XM_054055714.1:54..986"
                     /db_xref="GeneID:128850733"
ORIGIN      
        1 mrprgwflps algllgllac gvllladglg fgdlrcyghp fpaapcldrl aarglrftdl
       61 yssspvcsps retlrfcsma lrfrdvllya vpgavgllgc wwiysrmkkk aqspkegqee
      121 kvpekdphsl pisvkeecre netsasvlpa gstmpvtspe kweawekelm ekearlaqre
      181 qqlqrwwqdl ererkelele kaslqvkgqs qipnplkklt rvltqsgape sskeksparp
      241 qqghvdsems vspkrntllm tlkekspfrs pdttkpmdqa aeeeprcena psvqpkpkrr
      301 srrgkrkedc
//
LOCUS       XP_053911690             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911690
VERSION     XP_053911690.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055715.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527845) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=34881
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850734"
                     /coded_by="XM_054055715.1:25..981"
                     /db_xref="GeneID:128850734"
ORIGIN      
        1 msngssithf lllafadtre lqllhfwlfl giylaallgn gliitsiacd hhlhtpmyff
       61 llnlafldlg sisnsvpkam anslwdtrti syagcvsqvf lfvflfsaeh slltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flhallhtan tfslplcqgn avdqffceip
      181 qilklscsrs ylrevglldv svclyfgcfv fivvsyvqif ravqripseq grhkafstcl
      241 phlavvslfv stagfaylkp psisspamnl vasvlyavvp palnaliysl rnqqlkdavw
      301 klisgwfsea mncsspsa
//
LOCUS       XP_053911691             172 aa            linear   VRT 09-MAR-2023
DEFINITION  sensor histidine kinase AruS-like [Cuculus canorus].
ACCESSION   XP_053911691
VERSION     XP_053911691.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055716.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527845) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 47% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..172
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..172
                     /product="sensor histidine kinase AruS-like"
                     /calculated_mol_wt=17700
     CDS             1..172
                     /gene="LOC128850735"
                     /coded_by="XM_054055716.1:1..519"
                     /db_xref="GeneID:128850735"
ORIGIN      
        1 mplkgrercs krnqqiatsy ydstlcstaa gpfsaitavs pgrcrgavra ggaaggqrgs
       61 ggsanrgrsp pagrprrsgl psasppppaa ppprkgtsar sartcgagrv pvppvrprgl
      121 avrargrgar realkglrpl gclcmdtkpe csscvetedr kelkctsekk lp
//
LOCUS       XP_053911693             760 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 36-like [Cuculus canorus].
ACCESSION   XP_053911693
VERSION     XP_053911693.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055718.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527845) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 3% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..760
                     /product="ubiquitin carboxyl-terminal hydrolase 36-like"
                     /calculated_mol_wt=83975
     Region          137..437
                     /region_name="Peptidase_C19E"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02661"
                     /db_xref="CDD:239126"
     Site            order(142,147,398,415)
                     /site_type="active"
                     /db_xref="CDD:239126"
     CDS             1..760
                     /gene="LOC128850736"
                     /coded_by="XM_054055718.1:1..2283"
                     /db_xref="GeneID:128850736"
ORIGIN      
        1 mpppvsprpa pvppreaerg dtgrvrccgs pvrsgdtcae rrrggwppss aiaieehlef
       61 gkdgrelhqe latpfqapeq eqveveptkh saseqlnrlq gnehvrgmqg dgipvpkkvl
      121 fplerlslkw qrtqrigagl qnlgntcfln samqcltytp planyllsre hsqtcqrgef
      181 cmlctmekhi lqvfsssgsa ieptafvrdi kkiathihig rqedaheflg ftinamqrac
      241 lngctqldqq sqtttlihqi fggflrsrvm ckacnwpsdt yepfldlave ieeaesiaqa
      301 lklfvrpeml ceenaymcdk cktkvqaikr fsihrassvl ivslkrfsif sggkinkdvt
      361 ypevldirpy lsedkgdpmn yelyavlvhs gyschsghyy cyvkasngqw ykmndavvcl
      421 tsikvvlnqq ayvlfylrtp gtsksfegtv akavsippsq pvmgqppgst maikeqledg
      481 kdgrklhqil aisfqapqqr kteveptkhs aseqlnrlqg kdellnpfke agdsanpakq
      541 rnkhvrgmqs dgipvpkkvl fpverlslqw qrthrisagl qnlgnmclgk lraglrnlgn
      601 tlqgqglqlw rkkpetqpan klsgqeevgv svpcrtfstg pklptaskll qelrkhlsav
      661 pgvkppapeg srraklkrsl lavsaverss stspppakkm alsaekgstl eavsrddcct
      721 qpqpqlpeqm hpmdtthpds tsqpsgklst sssvlklpnp
//
LOCUS       XP_053911694             232 aa            linear   VRT 09-MAR-2023
DEFINITION  A-kinase anchor protein 13-like [Cuculus canorus].
ACCESSION   XP_053911694
VERSION     XP_053911694.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055719.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527845) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 25% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..232
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..232
                     /product="A-kinase anchor protein 13-like"
                     /calculated_mol_wt=26459
     CDS             1..232
                     /gene="LOC128850737"
                     /coded_by="XM_054055719.1:413..1111"
                     /db_xref="GeneID:128850737"
ORIGIN      
        1 malrfrdvll yavpgvvgll gcwwiyscmk kkaqspkegq eekvqekdph slpisvkeec
       61 renetsasvl pagatmsdts pekweawkke lmekearlaq reqqlqrwwq dlererkele
      121 lekaslqlkg qsqipnplkk ltrvltqsga tesskekspa rpqqghvdse psvspkrksl
      181 lmtlkekspf rspdttkpmd qaaeeeprce napsvqpkpk rrsrrgkrke dc
//
LOCUS       XP_053911695             237 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14J1-like [Cuculus canorus].
ACCESSION   XP_053911695
VERSION     XP_053911695.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055720.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527845) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 34% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..237
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..237
                     /product="olfactory receptor 14J1-like"
                     /calculated_mol_wt=25830
     Region          1..227
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          2..24
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          40..62
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          85..101
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          138..161
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          180..202
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..237
                     /gene="LOC128850738"
                     /coded_by="XM_054055720.1:1..714"
                     /db_xref="GeneID:128850738"
ORIGIN      
        1 myffllnlsl ldlgsistti pkamanslwn traisyvgca aqifflfffl gaeysllmvm
       61 aydryvaick pldygtllgt racvhmaaaa wgagflnall htantfslpl cqgnavdqff
      121 cevpqilkls cshsyfrevg llvvtffval gcfafivvsy vqicravlri pseqgrhkaf
      181 stclphlavv smfvstgmia ylkppstssp pldlvvavly svvppalcyl aeevitq
//
LOCUS       XP_053911696             324 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14J1-like [Cuculus canorus].
ACCESSION   XP_053911696
VERSION     XP_053911696.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055721.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527845) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 4% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..324
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..324
                     /product="olfactory receptor 14J1-like"
                     /calculated_mol_wt=35915
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..324
                     /gene="LOC128850739"
                     /coded_by="XM_054055721.1:7..981"
                     /db_xref="GeneID:128850739"
ORIGIN      
        1 msnsssithf lllafadtre lqllhfwlfl giyvaallgn gliittiacd hhlhtpmyff
       61 llnlalldlg sisttvpksm anslwgirai syagcvvqvf fffflisaey slliimsydr
      121 yvaickplhy gtllgsracv hmaaaawdtv flyallhtan tfslplcqgn avdqffceip
      181 qvlklccshs ylrevgllvv svfvafgcfv fivvsyvqif ravlripseq gqhkafstcl
      241 phlamvslfl sttffaylkp pstsstsldl mvsflysvvp palnpliysl rnqqlkdals
      301 qpllvhnvlq swpclelgig leit
//
LOCUS       XP_053911697             310 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911697
VERSION     XP_053911697.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055722.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527845) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..310
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..310
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=34239
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..310
                     /gene="LOC128850740"
                     /coded_by="XM_054055722.1:1..933"
                     /db_xref="GeneID:128850740"
ORIGIN      
        1 msnsssntqf lllaftdtrq lqllhfwlfl giylstllgn gliitaiacd hhlhtpmyff
       61 llnlslldlg sisttvpkam anslwnttai syvgcaaqif flffffgaey slltvmaydr
      121 yvaickpldy gtllgsracv hmaaaawgag flhallntan tfslplcqgn aveqffcevp
      181 qilkfscshs yfrevgllvv sffvalgcfv fivvsyvqif ravlripseq gqhrafstcl
      241 phlavvsmfv stgmiaylkp pstsspsldl vvavlysvvp pavnpliysl rnqqlkdavw
      301 klmtvlfkhh
//
LOCUS       XP_053911698             232 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14J1-like, partial [Cuculus canorus].
ACCESSION   XP_053911698
VERSION     XP_053911698.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055723.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527845) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 5% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the amino end.
FEATURES             Location/Qualifiers
     source          1..232
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         <1..232
                     /product="olfactory receptor 14J1-like"
     Region          1..207
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          1..20
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          29..44
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          56..72
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          109..132
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          151..173
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          182..207
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..232
                     /gene="LOC128850741"
                     /coded_by="XM_054055723.1:<1..699"
                     /db_xref="GeneID:128850741"
ORIGIN      
        1 lgiylstllg ngliitaiac dnhlhtpmyf fllnlsvldl gsmsttvlld sracvhmaaa
       61 awgasflcal lhtantfslp lckgnavdqf fceipqvlkl scshsylrev glsvvtlfii
      121 fscfifivvs yvqifravlr ipseqgrhka fstclphlav vslfvstamf ahlkppsiss
      181 plldlvvavp yavvppavnp liyslrnqql kgalwklisr wfyqavnsqa sa
//
LOCUS       XP_053911699             317 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911699
VERSION     XP_053911699.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055724.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527845) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 3% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..317
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..317
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=35273
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..317
                     /gene="LOC128850742"
                     /coded_by="XM_054055724.1:1..954"
                     /db_xref="GeneID:128850742"
ORIGIN      
        1 msnsssitqf lllaftdtre lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 llnlsildlg sisttlpkam anslwdtrai shigcacqvf lfgffisaey slltvmsydr
      121 yvaickplhy gtllgsracf hmaaaawgiv flyallhtan tfsmplckgn avdqffceip
      181 qilklscshs ylrevwllgv saclafgcfv fivvsyvqif ravlripseq grhkafsmcl
      241 shlavvsmfi stamiaylmp psisspslgl vvsilysvvp palnpliysl rnqqlkdavw
      301 klitwwfyqt incrgsa
//
LOCUS       XP_053911701             307 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911701
VERSION     XP_053911701.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055726.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527845) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..307
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..307
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=33979
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..307
                     /gene="LOC128850743"
                     /coded_by="XM_054055726.1:1..924"
                     /db_xref="GeneID:128850743"
ORIGIN      
        1 msntssitqf lllgftdtre lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 llnlsildmg sisttvpksm anslwnnrai syagctaqvf fmlfffsaey slltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgtv fpyavlhtan tfalplckgn aveqffceip
      181 kilklscshs ylkeagllvi scllalgwfv fivvsylqif ravlripseq gqhkafsmcl
      241 phltvvslfl stvmfahlkp psisspsldl vvavlysvvp palnpliysl rnqqlkdavw
      301 klvsgsf
//
LOCUS       XP_053911702             376 aa            linear   VRT 09-MAR-2023
DEFINITION  acrosin-like [Cuculus canorus].
ACCESSION   XP_053911702
VERSION     XP_053911702.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055727.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527845) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 14% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..376
                     /product="acrosin-like"
                     /calculated_mol_wt=41328
     Region          71..307
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            72
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(116,165,262)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(256,283,285)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..376
                     /gene="LOC128850744"
                     /coded_by="XM_054055727.1:1..1131"
                     /db_xref="GeneID:128850744"
ORIGIN      
        1 mkmlfffvll alclpvqgsw qtceqssepg aagcpkaaht hpssrafsrv sgshrtcglr
       61 pldyygygsa rvvggrdaqp gawpwivsvq kvrethishv cggsiihpqw vltaahcfvd
      121 aqnvpawcvv agttsltdmg peaqvryvrq iiihedyynt tqandialme lyepfrcgpy
      181 vqlacvpdfs lqlwqlrncy vsgwgvttar sgglppalqe akvplidiqv cnssgwyrgd
      241 ihphnlcagy pqggidtcqg dsggplvcqd syadhfwlvg vtsfgagcar ahrpgvytst
      301 rhfrdwiltq mmrrsvkaat atqrfwshfl ttsnpvempq ttepsysssc lyplnklvdf
      361 ftqvqellqv lkggst
//
LOCUS       XP_053911703             311 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16 [Cuculus canorus].
ACCESSION   XP_053911703
VERSION     XP_053911703.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055728.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527845) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..311
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..311
                     /product="olfactory receptor 14A16"
                     /calculated_mol_wt=34763
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..311
                     /gene="LOC104062046"
                     /coded_by="XM_054055728.1:964..1899"
                     /db_xref="GeneID:104062046"
ORIGIN      
        1 msnsssitqf llwaftdtre lrllhfwlfm giylaalldn gliitiiacd hhlhtpmyff
       61 llnlslldlg sisttvpksm anslwetrai syagcaaqvf lfvlfftaes slltimaydr
      121 yvaickplhy etllggracv hmataawstg ifcgllhtan tfslplcqgn avdqffceip
      181 qvlklscshs yfrevglsvv tlfvvfscfv fiamsyvqif rvvlripseq grhkafstcl
      241 phlavvslfv stamfahlkp rsissplldl vvavlysvvp pamnpliysl rnkeikdavw
      301 klmfecfhka i
//
LOCUS       XP_053911704             311 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16 [Cuculus canorus].
ACCESSION   XP_053911704
VERSION     XP_053911704.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055729.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527845) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..311
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..311
                     /product="olfactory receptor 14A16"
                     /calculated_mol_wt=34763
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..311
                     /gene="LOC104062046"
                     /coded_by="XM_054055729.1:1307..2242"
                     /db_xref="GeneID:104062046"
ORIGIN      
        1 msnsssitqf llwaftdtre lrllhfwlfm giylaalldn gliitiiacd hhlhtpmyff
       61 llnlslldlg sisttvpksm anslwetrai syagcaaqvf lfvlfftaes slltimaydr
      121 yvaickplhy etllggracv hmataawstg ifcgllhtan tfslplcqgn avdqffceip
      181 qvlklscshs yfrevglsvv tlfvvfscfv fiamsyvqif rvvlripseq grhkafstcl
      241 phlavvslfv stamfahlkp rsissplldl vvavlysvvp pamnpliysl rnkeikdavw
      301 klmfecfhka i
//
LOCUS       XP_053911705             311 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16 [Cuculus canorus].
ACCESSION   XP_053911705
VERSION     XP_053911705.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055730.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527845) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..311
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..311
                     /product="olfactory receptor 14A16"
                     /calculated_mol_wt=34763
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..311
                     /gene="LOC104062046"
                     /coded_by="XM_054055730.1:334..1269"
                     /db_xref="GeneID:104062046"
ORIGIN      
        1 msnsssitqf llwaftdtre lrllhfwlfm giylaalldn gliitiiacd hhlhtpmyff
       61 llnlslldlg sisttvpksm anslwetrai syagcaaqvf lfvlfftaes slltimaydr
      121 yvaickplhy etllggracv hmataawstg ifcgllhtan tfslplcqgn avdqffceip
      181 qvlklscshs yfrevglsvv tlfvvfscfv fiamsyvqif rvvlripseq grhkafstcl
      241 phlavvslfv stamfahlkp rsissplldl vvavlysvvp pamnpliysl rnkeikdavw
      301 klmfecfhka i
//
LOCUS       XP_053911706             311 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16 [Cuculus canorus].
ACCESSION   XP_053911706
VERSION     XP_053911706.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055731.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527845) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..311
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..311
                     /product="olfactory receptor 14A16"
                     /calculated_mol_wt=34763
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..311
                     /gene="LOC104062046"
                     /coded_by="XM_054055731.1:2365..3300"
                     /db_xref="GeneID:104062046"
ORIGIN      
        1 msnsssitqf llwaftdtre lrllhfwlfm giylaalldn gliitiiacd hhlhtpmyff
       61 llnlslldlg sisttvpksm anslwetrai syagcaaqvf lfvlfftaes slltimaydr
      121 yvaickplhy etllggracv hmataawstg ifcgllhtan tfslplcqgn avdqffceip
      181 qvlklscshs yfrevglsvv tlfvvfscfv fiamsyvqif rvvlripseq grhkafstcl
      241 phlavvslfv stamfahlkp rsissplldl vvavlysvvp pamnpliysl rnkeikdavw
      301 klmfecfhka i
//
LOCUS       XP_053911707             311 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16 [Cuculus canorus].
ACCESSION   XP_053911707
VERSION     XP_053911707.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055732.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527845) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..311
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..311
                     /product="olfactory receptor 14A16"
                     /calculated_mol_wt=34763
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..311
                     /gene="LOC104062046"
                     /coded_by="XM_054055732.1:2303..3238"
                     /db_xref="GeneID:104062046"
ORIGIN      
        1 msnsssitqf llwaftdtre lrllhfwlfm giylaalldn gliitiiacd hhlhtpmyff
       61 llnlslldlg sisttvpksm anslwetrai syagcaaqvf lfvlfftaes slltimaydr
      121 yvaickplhy etllggracv hmataawstg ifcgllhtan tfslplcqgn avdqffceip
      181 qvlklscshs yfrevglsvv tlfvvfscfv fiamsyvqif rvvlripseq grhkafstcl
      241 phlavvslfv stamfahlkp rsissplldl vvavlysvvp pamnpliysl rnkeikdavw
      301 klmfecfhka i
//
LOCUS       XP_053911708             336 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850746 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911708
VERSION     XP_053911708.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055733.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527845) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..336
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..336
                     /product="uncharacterized protein LOC128850746 isoform X1"
                     /calculated_mol_wt=36757
     CDS             1..336
                     /gene="LOC128850746"
                     /coded_by="XM_054055733.1:1674..2684"
                     /db_xref="GeneID:128850746"
ORIGIN      
        1 mctqiaweac vwdvrmapvs hlwvcsvphs adgmdsplld lqpgpisaap gsmrwgslqq
       61 sslaqtsqll aavhdpcfpg ttihccegrr ycrdsepded qgmevfcgvr alqhgnrgdi
      121 vthvmalyrv eggptyeval sgeaslvncl vdirdrlwaa gttrfslqrs lklspaglgl
      181 splpatllai wlgstmfecy vlypswflva iptalakakq pqvqvghlep eeislkgkgn
      241 fprfsldlpw nikgehclsa prkilcspph llhvfcpqgs shplhqacrf rgcqtntqps
      301 gcflslwqvn lwalpqepsy racqqncwsp gkvmag
//
LOCUS       XP_053911709             336 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850746 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911709
VERSION     XP_053911709.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055734.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527845) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..336
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..336
                     /product="uncharacterized protein LOC128850746 isoform X1"
                     /calculated_mol_wt=36757
     CDS             1..336
                     /gene="LOC128850746"
                     /coded_by="XM_054055734.1:1738..2748"
                     /db_xref="GeneID:128850746"
ORIGIN      
        1 mctqiaweac vwdvrmapvs hlwvcsvphs adgmdsplld lqpgpisaap gsmrwgslqq
       61 sslaqtsqll aavhdpcfpg ttihccegrr ycrdsepded qgmevfcgvr alqhgnrgdi
      121 vthvmalyrv eggptyeval sgeaslvncl vdirdrlwaa gttrfslqrs lklspaglgl
      181 splpatllai wlgstmfecy vlypswflva iptalakakq pqvqvghlep eeislkgkgn
      241 fprfsldlpw nikgehclsa prkilcspph llhvfcpqgs shplhqacrf rgcqtntqps
      301 gcflslwqvn lwalpqepsy racqqncwsp gkvmag
//
LOCUS       XP_053911710             328 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850746 isoform X2 [Cuculus canorus].
ACCESSION   XP_053911710
VERSION     XP_053911710.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055735.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527845) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..328
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..328
                     /product="uncharacterized protein LOC128850746 isoform X2"
                     /calculated_mol_wt=36106
     CDS             1..328
                     /gene="LOC128850746"
                     /coded_by="XM_054055735.1:142..1128"
                     /db_xref="GeneID:128850746"
ORIGIN      
        1 mkvgaqeeey tlladtgaer tcpvrvpegc kangtldgva lpesraertp ipeaevtkmd
       61 wqervkercc sgttihcceg rrycrdsepd edqgmevfcg vralqhgnrg divthvmaly
      121 rveggptyev alsgeaslvn clvdirdrlw aagttrfslq rslklspagl glsplpatll
      181 aiwlgstmfe cyvlypswfl vaiptalaka kqpqvqvghl epeeislkgk gnfprfsldl
      241 pwnikgehcl saprkilcsp phllhvfcpq gsshplhqac rfrgcqtntq psgcflslwq
      301 vnlwalpqep syracqqncw spgkvmag
//
LOCUS       XP_053911712             206 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein-like [Cuculus canorus].
ACCESSION   XP_053911712
VERSION     XP_053911712.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055737.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527846) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 37% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..206
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..206
                     /product="hydrocephalus-inducing protein-like"
                     /calculated_mol_wt=22746
     CDS             1..206
                     /gene="LOC128850750"
                     /coded_by="XM_054055737.1:1..621"
                     /db_xref="GeneID:128850750"
ORIGIN      
        1 mpiilveggp tyevalsgea slinsvldna eidyglqpee islkgegsfp risldlprni
       61 kgnekyekvl kgakeemeqd sqrdeavvlg etvaaepptd gsssmlepcl qmqmeqmlle
      121 ehaleqlkal acgppedtaf dqrarcgllk aelpecildf gyvirgsiht hvvkitntgr
      181 fpvsfytdkr vlrstgnhyw cdftwa
//
LOCUS       XP_053911713             125 aa            linear   VRT 09-MAR-2023
DEFINITION  dynein axonemal heavy chain 17-like [Cuculus canorus].
ACCESSION   XP_053911713
VERSION     XP_053911713.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055738.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527846) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 12% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..125
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..125
                     /product="dynein axonemal heavy chain 17-like"
                     /calculated_mol_wt=13827
     Region          4..>25
                     /region_name="DD_R_PKA_DPY30-like"
                     /note="dimerization/docking (D/D) domains found in the
                     cAMP-dependent protein kinase regulatory subunit (PRKAR)
                     and the DPY30/SDC1-like family; cl02594"
                     /db_xref="CDD:445844"
     CDS             1..125
                     /gene="LOC128850751"
                     /coded_by="XM_054055738.1:219..596"
                     /db_xref="GeneID:128850751"
ORIGIN      
        1 msappdkphd ilksyaksll rtqpeewrkf egneeaaavl deffqqpdvq elvlgqdptg
       61 qlqatahfpp tleskavcfv kkkreeitpe nfqsgvmvgd ispspveqli tmmeeqaaid
      121 pkfas
//
LOCUS       XP_053911714             437 aa            linear   VRT 09-MAR-2023
DEFINITION  gastrula zinc finger protein XlCGF52.1-like [Cuculus canorus].
ACCESSION   XP_053911714
VERSION     XP_053911714.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055739.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527846) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 5% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..437
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..437
                     /product="gastrula zinc finger protein XlCGF52.1-like"
                     /calculated_mol_wt=49623
     Region          5..63
                     /region_name="KRAB"
                     /note="krueppel associated box; smart00349"
                     /db_xref="CDD:214630"
     Region          133..>400
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          133..153
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          161..181
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(166,168,170,172..173,176..177,180,194,196,200..201,
                     204..205,208,222,224,226,228..229,232..233,236)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          189..209
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          217..237
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          245..265
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          273..293
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          301..321
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(306,308,310,312..313,316..317,320,334,336,340..341,
                     344..345,348,362,364,366,368..369,372..373,376)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          329..349
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          357..377
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          385..405
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          413..432
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..437
                     /gene="LOC128850752"
                     /coded_by="XM_054055739.1:72..1385"
                     /db_xref="GeneID:128850752"
ORIGIN      
        1 magpfeevav yfsreewael agwqrrlyre vmldtygmla slgwaavkpe licrlerget
       61 pcvpdppger qrhrspvpgg srgspggmgg sssrslgess qdepsgscgd peghphpplg
      121 lapqprektp ltcpecnksf rsrsaltahk kihagegpft ctncsksfsr ksnltrhqri
      181 htgerpfhca dcgknfnqkk llithqriht gerpftcpec sksfrekvsl ithqrihtge
      241 rpftcpecsk sfsqkvslir hqsihtgerp factncsksf rvkvslikhq rthtderpft
      301 cpecsksfsq kvhlirhqsi htgerpftct ecsksfreks vliahqrihs gekpyncevc
      361 nktfrqksdl krhqrshtge cpftctdcdk sfshrvsltk hqcihrgekp ftcqtrgksf
      421 sqkcylilyq htrrkrr
//
LOCUS       XP_053911715            1193 aa            linear   VRT 09-MAR-2023
DEFINITION  dynein axonemal heavy chain 17-like [Cuculus canorus].
ACCESSION   XP_053911715
VERSION     XP_053911715.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055740.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527846) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1193
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1193
                     /product="dynein axonemal heavy chain 17-like"
                     /calculated_mol_wt=135179
     Region          181..735
                     /region_name="DHC_N1"
                     /note="Dynein heavy chain, N-terminal region 1; pfam08385"
                     /db_xref="CDD:462457"
     CDS             1..1193
                     /gene="LOC128850753"
                     /coded_by="XM_054055740.1:219..3800"
                     /db_xref="GeneID:128850753"
ORIGIN      
        1 msappdkphd ilksyaksll rtqpeewrkf egneeaaavl deffqqpdvq elvlgqdptg
       61 qlqatahfpp tleskavyfv kkkreeitpe nfqsgvmvgd ispspveqli tmmeevvspl
      121 llseknmagl pgvvveeivq etrqlkeeml vmrakiqgkp llvlpehlds rlagpmdnsm
      181 lptietvvtq wshqirdvls kdseqslleg lqllprteid fwhtrtvalq cvndqllspr
      241 ateiaevlek anscywpmlq sllrdvsagl eeakdvglhl qqlrillekl eqanylqlqp
      301 cldrvlcavy llrahcqyys sparvimllr kicnlliemt ctfvsregvm kglqgetqei
      361 lgrirlsist vekffqsyst ycsdpiptll qeelqlwklp pfllfrrmds flqrlktiee
      421 lyqtamefqk lekaelegvr ekifrsqlfq iceevselik afveckydpl dpteeqwdkd
      481 faafqkkmed vdrrlattfr qcfedcsrla savksvhmfs sllerplika evspcysall
      541 rmfhaelknv rvlfeaqtts lpspgagqvs nknlppvagq lawalelqhq lerpyrdlfa
      601 ishpamacae akevsgqyee mmgllqgyse kvyeewmhgv gqdchfgleq plilrdsvss
      661 llsmnfsetl vavlqevkym kflqkssaes lfaqkesfqk fvnnvehivg wynevkrcll
      721 pvelsllage leavestvfc yregigdyiq kmreclcdlh trvqkaklnv eaiaqlmedc
      781 satpvfgrkd qkeaalldls gkaetltkrc aalkdtgvki qkmveenarl fkadvssqlw
      841 ldyvgyidgi vldglfklvr kslqllltnm apaadtapap lfevqmelrd grvryhpsle
      901 arddnsflel vesllsdlya caacvprllk geltykrtle eqaelsrmre kvvslvvsam
      961 teaeeystgf eeqaqqwled pedflqrlln fgsgaspeel epqpeeplar gspcvqlfql
     1021 eidaceatyk evsdlantqv fkgwlrsdcr pfkqallaai ksrglvlrqh lvshvtaslq
     1081 elegflrdld tglnkpleeg dydglvemmg hvrrakerqa atdtmfeplk emvallssyg
     1141 eqmpeeihlq lqvlpkrwds tkklclhvek tvaslqadii pgkcgsggtd sqq
//
LOCUS       XP_053911716             657 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier organic anion transporter family member 4C1-like
            [Cuculus canorus].
ACCESSION   XP_053911716
VERSION     XP_053911716.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055741.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527846) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..657
                     /product="solute carrier organic anion transporter family
                     member 4C1-like"
                     /calculated_mol_wt=70368
     Region          55..561
                     /region_name="MFS"
                     /note="Major Facilitator Superfamily; cl28910"
                     /db_xref="CDD:475125"
     Site            order(68..69,72..73,76,109,197..198,200..202,205,225,
                     228..229,232,348,351..352,355..357,360,389,393,434..435,
                     439,443,500,503..504,507..508,511)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:349949"
     Region          <534..647
                     /region_name="MFS"
                     /note="Major Facilitator Superfamily; cl28910"
                     /db_xref="CDD:475125"
     CDS             1..657
                     /gene="LOC128850754"
                     /coded_by="XM_054055741.1:1..1974"
                     /db_xref="GeneID:128850754"
ORIGIN      
        1 mdggdiqnpv feaprpelgr qrqasasgtd spaeegpcgw gscapeplql cndaegylaa
       61 hsllavcqgi vvnglvnvsv stierryesn ssltglmsag ydiavcilsl fvsffgergh
      121 kprwlafsaf llglgslifs lphfisgkyh fgaklddtcq ipgasatnft csastesslh
      181 kyllvfmlgq lllgaggtpl ytlgtafidd svpkhkssly igigkavsll gpaigfvlgg
      241 qllniyidiq ipestkldqd dprwpgarwi pflacsfaiw llitpvscfp khlpgttkiq
      301 aekisethnd gsaalvenqn igksfkdfpv allillknpv lmsliiasss ealvatgfvt
      361 flpkfienef gktssfsatl gglvlvpaaa lgqivsgili skckmdcksi ikfttgtcsv
      421 allfssvvlf akcgnepfag vsetyngtgv lydltapcna dcrclrsmyy picgrdevqy
      481 fspcfagcas hlfnsmkkty hncscigkpk resdsggffy eavpgkcptq ckllpffltf
      541 vffavvftcm aitpttvail rcvpdkqrsf algvqevflr llgtipgpil fgvaidnsct
      601 lwdfnecktk gaclvydngr mayllmgist ackiitiifv ftagclykpp sasadls
//
LOCUS       XP_053911717             439 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein-like [Cuculus canorus].
ACCESSION   XP_053911717
VERSION     XP_053911717.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055742.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527846) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..439
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..439
                     /product="hydrocephalus-inducing protein-like"
                     /calculated_mol_wt=49794
     CDS             1..439
                     /gene="LOC128850755"
                     /coded_by="XM_054055742.1:470..1789"
                     /db_xref="GeneID:128850755"
ORIGIN      
        1 meqltrelee krqqklkhle ekellmkcsr mgkrwlgear nsalrrksea gvrqilddlg
       61 lgpsgppvpp ttfysvvhyp ekwvapaaed lehfifvvpe gttaedkrkd tasglkasav
      121 lpvkrsella sptrrrvkek avvhqkaaee kpssgqgrrg qqdaptyslr vkrsrvnmvq
      181 ppqrparlsh cqwivpahdk velkvhfsst elgqfdqtlh feilgtkrqy qlqcrgtcly
      241 paisqdprvv fphqrkskvd ddivskqyvm dkgvfhfgpl lcgkskdwyk aehcpsnfek
      301 inilnitsse aevhfcfehd rrmdvfrldp psmrlkpnek qelsiwaypt stglkadnli
      361 cciednpdpa vfrlccqgvq vklevspkkv qfkgcfctgt aihccegrry crdsepdedq
      421 gtevvrgvra lqcgnrggf
//
LOCUS       XP_053911718             287 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein homolog [Cuculus canorus].
ACCESSION   XP_053911718
VERSION     XP_053911718.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055743.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527846) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..287
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..287
                     /product="hydrocephalus-inducing protein homolog"
                     /calculated_mol_wt=32119
     CDS             1..287
                     /gene="LOC128850756"
                     /coded_by="XM_054055743.1:177..1040"
                     /db_xref="GeneID:128850756"
ORIGIN      
        1 mllpikvdkh vresvcwkll qelkskphvf talpsagals pgqrcdvrvr fsptaeksyk
       61 sslrtnisqs sqhlqlqvsg hglepqlefc ptvlelgpll ldshgaegtv lvknpcellv
      121 effslefdee ylaeeqilrm ledynsqsts llpprapgek lplevldyye dqkrlqdeqg
      181 ksktgepagq angnfegtqf lsdegrkpsa givhsissfl vetsptrwtv nlnvekrrrk
      241 vlrkdtggai tlsfslllcp lwqkgeglqc hlhhftaars rfhsyrp
//
LOCUS       XP_053911719             289 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein homolog [Cuculus canorus].
ACCESSION   XP_053911719
VERSION     XP_053911719.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055744.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527846) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..289
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..289
                     /product="hydrocephalus-inducing protein homolog"
                     /calculated_mol_wt=32360
     CDS             1..289
                     /gene="LOC128850758"
                     /coded_by="XM_054055744.1:910..1779"
                     /db_xref="GeneID:128850758"
ORIGIN      
        1 mllpikvdkh vresvcwkll qelkskphvf talpsagals pgqrcdvrvr fspteeksyk
       61 sslrtnisqs sqhlqllvsg hglepqlefc ptvlelgpll ldshgaegtv lvknpcellv
      121 effslefdee ylaeeqilrm ledynsqsts llpprapgek lplevldyye dqkrlqdeqg
      181 ksrtgepagq angnfegtqf lsdegrkpsa givhsissfl vetsptrwtv nlnvekrrrk
      241 vlrkdtggai tlsfslllcp lwqkglgegl qchlhhftaa rsrfhsyrp
//
LOCUS       XP_053911720             289 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein homolog [Cuculus canorus].
ACCESSION   XP_053911720
VERSION     XP_053911720.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055745.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527846) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..289
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..289
                     /product="hydrocephalus-inducing protein homolog"
                     /calculated_mol_wt=32360
     CDS             1..289
                     /gene="LOC128850758"
                     /coded_by="XM_054055745.1:177..1046"
                     /db_xref="GeneID:128850758"
ORIGIN      
        1 mllpikvdkh vresvcwkll qelkskphvf talpsagals pgqrcdvrvr fspteeksyk
       61 sslrtnisqs sqhlqllvsg hglepqlefc ptvlelgpll ldshgaegtv lvknpcellv
      121 effslefdee ylaeeqilrm ledynsqsts llpprapgek lplevldyye dqkrlqdeqg
      181 ksrtgepagq angnfegtqf lsdegrkpsa givhsissfl vetsptrwtv nlnvekrrrk
      241 vlrkdtggai tlsfslllcp lwqkglgegl qchlhhftaa rsrfhsyrp
//
LOCUS       XP_053911721             506 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: gastrula zinc finger protein XlCGF57.1-like
            [Cuculus canorus].
ACCESSION   XP_053911721
VERSION     XP_053911721.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055746.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527846) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..506
                     /product="LOW QUALITY PROTEIN: gastrula zinc finger
                     protein XlCGF57.1-like"
                     /calculated_mol_wt=57837
     Region          14..34
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          42..62
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          53..497
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          70..90
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          98..118
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(103,105,107,109..110,113..114,117,131,133,137..138,
                     141..142,145,159,161,163,165..166,169..170,173)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          126..146
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          154..174
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          182..202
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(187,189,191,193..194,197..198,201,215,217,221..222,
                     225..226,229,243,245,247,249..250,253..254,257)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          210..230
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          238..258
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          266..286
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          294..314
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(299,301,303,305..306,309..310,313,327,329,333..334,
                     337..338,341,355,357,359,361..362,365..366,369)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          322..342
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          350..370
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          378..398
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          406..453
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          461..481
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..506
                     /gene="LOC128850759"
                     /coded_by="XM_054055746.1:226..1746"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon"
                     /db_xref="GeneID:128850759"
ORIGIN      
        1 mippqplqkp lptcpecnks frtrtalaih ershtgerpf tcpecgknfi qkkhlvkhql
       61 ihtkespfic adcnksfsqk gslikhqrih tgerpftcsv csksfsrkgd lvihqrihtk
      121 erpficadcn ksfsqkgsli khqrihtger pftcsvcsks fsrkgdlvih qrihtkerpf
      181 tcsdcgksfn rkgdlvihqr ihtkerpfic adcnksfsqk gsliihqrih tgerpftcsv
      241 csksfsrkgd lvihqrihtg ehpfacnhcn hyfsqkqhlv ihqrihtger pftcsncsks
      301 frekgslikh qrihtgerpf tcsdcgksfn rkgalvihqr ihtgerpfic tdcgrsfrek
      361 galikhqrih stespxrcsn cdknfiwkca ltnhrcvhtg erpfacshcn hhfsphlhsg
      421 papwllektp smfpeckksf rnqtalaihe qshtgewpft csrcsksflq kdslinhqri
      481 htgecpfafi dcgksfsnti sllkck
//
LOCUS       XP_053911722            2864 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: hydrocephalus-inducing protein homolog,
            partial [Cuculus canorus].
ACCESSION   XP_053911722
VERSION     XP_053911722.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055747.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527846) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 2% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the amino end.
FEATURES             Location/Qualifiers
     source          1..2864
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         <1..2864
                     /product="LOW QUALITY PROTEIN: hydrocephalus-inducing
                     protein homolog"
     Region          1259..1430
                     /region_name="Hydin_ADK"
                     /note="Hydin Adenylate kinase-like domain; pfam17213"
                     /db_xref="CDD:465383"
     Region          <1460..1651
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          1468..>1559
                     /region_name="TPH"
                     /note="Trichohyalin-plectin-homology domain; pfam13868"
                     /db_xref="CDD:464007"
     Region          <1713..>1748
                     /region_name="CAF-1_p150"
                     /note="Chromatin assembly factor 1 complex p150 subunit,
                     N-terminal; pfam11600"
                     /db_xref="CDD:402959"
     CDS             1..2864
                     /gene="LOC128850760"
                     /coded_by="XM_054055747.1:<1..8596"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon"
                     /codon_start=2
                     /db_xref="GeneID:128850760"
ORIGIN      
        1 cvvpllraln pvmtfgqcfl kvpyqqmltl vndsnlpgcy rilpqeykda aavrysslap
       61 cgiiqphssv evpftlqaqv vgeqdtvarv mtigsegapl eihlvsigeg pvvyvhpski
      121 nfgriqvlqd asrtlhlsnq tlapasfrve magkcsrwri eprkgvippn telsvavvan
      181 lddtgmfnde vkvfiehghs yvipiqaigf gttivtdkai apelnlgphf stipfcyrfk
      241 vtnkgrrthl lywttegfst frqrhhlpal tttkgkdssq npksacpvfk lrplrvelmp
      301 gksmemvleg fsstpqvvke rllchavvgs eagkvrimqv dvtcefiapv lqvssrelif
      361 rvekqpsdvv tlqykplslk nicplplsvv laleepflic hadrqplpad vqpvkleage
      421 echlsirfnp aceegltsre vekvlkiqfl ehpheeqvsv rrevyfpslr iqttaldfgc
      481 iwndteavry temsncsplp vryrwlfltd gpasqmrfsp pasqcfitaq ppqenitrse
      541 gsasaesssr eeaaeepakg lgaagdalqk padasdslea kplpstapkm egteetgslq
      601 rrqftqaepv svgieevfni lplhgvllpg esqrvmftff ghanivarvm alcrveggpt
      661 yevalsgeas linyvldnae idyglqkqev tlqnsgkvgf tyavlspsva tagcprprep
      721 lvlpstgyvg agkeqalkvy ylpgvpggfc rtfqvqvghl epeeislkge gsfprisldl
      781 prnikgneky ekvlkgakek meqdsqrdea vvlgetvaae pptdgsstml epclqmqmeq
      841 mlleehaleq lkalacgppe dtafdqrarc rllkaelpey ildfgyvicg sshthvvkit
      901 ntgrfpvsfy tdkrvlrstg frvepdhvkd lpccetesft vhfdsenanl plgevdvllp
      961 ikvaegptyh vrlranvtvp slclskdrld fsavqcgqcr eetvqfhnql qvpckwfiti
     1021 nepvekvdkr vpgnvqkvae qapcxftalp sagalspgqr cnvrvrfspt eeksynsilk
     1081 inisqssrsl qlqvsghgle pqlefsptvl elgplmprsc gvegdrwige epsaispief
     1141 yslefdreyl eeeqilrmlk gyncqntlll pprapgeklp pevleyyqdq krlqdeqakp
     1201 etgepagqan aehqqsitgs keaageqdds pvyraiarhl gidlspegra aqnrrgivii
     1261 vhgapltgkt saavslskyy gaaclsidav vreaisdkrs laglrarelc vaatseqshk
     1321 etnnagrgad vsfqqevsve akhslkvshs iskgkgslrp irshvqglss fhhvfpslci
     1381 papqrlsisg gtegerrsvs cvlpedllva ilserlqlsd csqgvvfdgl etlfahsmvs
     1441 allcllkavr nrphiyfvnl yqdydswkar etamkeqkgq eqeeparsee aylqdmdeee
     1501 ydalteeqki qfnnnirqvq rerkkremeq laqeleekrq qklkhlkeke llrkcsrmvt
     1561 rwlgetrnsa vrrksearvr qnantststa sprnqpsvtk gankkgsvkd hpgsvdsgke
     1621 epkkgskipl taacpaadve pagpeqretk nealsesddn lalrfklyea sqkgmahils
     1681 fwdrvqgill splsqeemlh kggdqhkrls shryrkdrek erlekerrek krlekerlgk
     1741 lkaleesklc lleeegaqgs srgqdvgvps ldiqvlnpkd vtrkilesgk lpaaeqildd
     1801 lglgpsgppv ppttfysvvh ypekrvapaa edlehfifvv pegttgedkq kdtasglkas
     1861 avltvkrsel lasptrrsvk ekavvhqkaa eekpssgqgr rghqdaptys lrvkrsrvnv
     1921 vqppqrparl shcrwivpah dkvelkvhfs stelgqfdqt lhfeilgtkr qyqlqcrgtc
     1981 lypaisqdpr vvfphqsrsk kyddivskqy vmdkgvfhfg pllcgkskdw ykaqhcpsnf
     2041 ekinilnits leaevhfcfe hdrrmdvfrl dppsmrlkpn ekqelsiway ptstglkedn
     2101 licciednpd pvvfrlccqg vqvklevspk kvqfnrlllh rmdsktvvlh nptplpvaww
     2161 irgledlgeg fsvsqdagii gpcsefgmrl cfkatkvddi kktfqvevsd aekllgivqv
     2221 esiqvfaeay digldinvst gqgyvdfgal kvlgeakqvl tlknrgkyei vysfkleaad
     2281 tnipdlashf tvhpqkgmla ssgdsmhvhl lfhpkremsi edkailqcqv idpsisegdk
     2341 iaavipikvs akaafskysi spaslinfgv vlkgtrktrt ftlenkgvla fnfhicrvpp
     2401 kpsahqlqsv qscmsedtrt navlakkskc llqqdagpvi etrftlgmft vypgfgsipp
     2461 ggrqtitvec raatlgkcke hlsidiqgra ptdnplgvpy tlfaescfpa fvvddiesif
     2521 eehricgnkk lyqslqtlqd kgvfitdenr fiftnvvvgh qaearfkirn vnkvpcnvvl
     2581 svkpistehk ndikgifkvd plqmcvpsrs hafatvtfsp lkaknyrctf easldiqasp
     2641 aatkaqsltf sitgagnlpq vtvlrpvlrd ekgnplllfk klllgdsqel plvicnsgiv
     2701 pvqlimdllg gegvfflntr attrciykda gmeedspgag rkphtvslvl lpgesaefdv
     2761 lfkpnlarhv egkirvlvvg slnaetnihl vgdgceddfl lenihglmag seestegnlk
     2821 edvtegksre tarieqgtgr qtflltlcqc tcgpdlagrs cgll
//
LOCUS       XP_053911723             287 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC104062094 [Cuculus canorus].
ACCESSION   XP_053911723
VERSION     XP_053911723.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055748.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527847) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..287
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..287
                     /product="uncharacterized protein LOC104062094"
                     /calculated_mol_wt=29876
     CDS             1..287
                     /gene="LOC104062094"
                     /coded_by="XM_054055748.1:501..1364"
                     /db_xref="GeneID:104062094"
ORIGIN      
        1 mrdgsarpsr rcghgaaapl aarhrasatp vpggsapsrs qgctwilmva awssscpgsk
       61 avcvwgagss lpaaqspfqk srqrgrrsgs rawsralatf slpvllarlv pkclqggscc
      121 lgccsrclrg eeaagqehpg lscwggreen kglelpgrrl alvfselcsg lncvvgvrgl
      181 hpvwlipswa ggvrvaalgr qrgkasaavp agawrdsssi sragkkehsg aegvewverr
      241 gkagagrrga gaeqgtress aekklgplak strrgsparr wrrcggr
//
LOCUS       XP_053911725             792 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850761 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911725
VERSION     XP_053911725.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055750.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527847) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..792
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..792
                     /product="uncharacterized protein LOC128850761 isoform X1"
                     /calculated_mol_wt=88327
     Region          8..68
                     /region_name="HU-CCDC81_euk_1"
                     /note="CCDC81 eukaryotic HU domain 1; pfam14908"
                     /db_xref="CDD:464364"
     Region          92..166
                     /region_name="HU-CCDC81_euk_2"
                     /note="CCDC81 eukaryotic HU domain 2; pfam18289"
                     /db_xref="CDD:465696"
     Region          <325..603
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     CDS             1..792
                     /gene="LOC128850761"
                     /coded_by="XM_054055750.1:3086..5464"
                     /db_xref="GeneID:128850761"
ORIGIN      
        1 mmkypfirfp alkvlslaev vrvwdtvsey mlqqialnkg vaidglgvfy vlrqhyskln
       61 gdvlapkfhl legvmqaqri shanrdvpdd lqvvpldysq lslkttvsek mveecvndlv
      121 vlftwgaglg edydlvfkgi gilrsrdnil rmtyykdfll aidgtgtvln cmlsnpltri
      181 nvisdndssa fhmspqgirv lpmfeiklpp grtaedfflm kgsgnkqvvg tpgsrcqhpq
      241 mrhspgkltr arkakgekes tkseefhqll ptwkfqleqq edmveerekg shpedsvppg
      301 rkfsvrtlpv lkpeekvear fevkpperse lsqvppltpr ppamspgkpd eqgrgshpek
      361 sekkgerrqs nacvlteacq fllcalehgk kallkgshpe ksvrngrkhs irtlrtqkpe
      421 ekvearfevk tperselsqv ppltprppem spgkpdeqgr gshpekslhp grkissrtsr
      481 drraeeekgv sgltgkpper sellwmphlt prppkmppgk pdeqgrgshp eknlhpgrkf
      541 ssrtsrdrra eeekgvsglt gkppersell wmphltprpp kmppgkpdeh grgclsekif
      601 vnqgrfwpki snqfemdlwk gvykpadsva lqivgksllk grtpsqpppp ggahaqgkst
      661 caqsrprlrh csmdtcglpg gvchtspglr wskgrvsrrk qvyvpvkisv qlhtallaiq
      721 qvgksrrkgw kpehlwflgc isssrggvvp sctaffspas srgqdappel cekvpgaasa
      781 wrsqeshqpl qn
//
LOCUS       XP_053911726             790 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850761 isoform X2 [Cuculus canorus].
ACCESSION   XP_053911726
VERSION     XP_053911726.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055751.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527847) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..790
                     /product="uncharacterized protein LOC128850761 isoform X2"
                     /calculated_mol_wt=88129
     Region          8..68
                     /region_name="HU-CCDC81_euk_1"
                     /note="CCDC81 eukaryotic HU domain 1; pfam14908"
                     /db_xref="CDD:464364"
     Region          92..166
                     /region_name="HU-CCDC81_euk_2"
                     /note="CCDC81 eukaryotic HU domain 2; pfam18289"
                     /db_xref="CDD:465696"
     Region          <323..601
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     CDS             1..790
                     /gene="LOC128850761"
                     /coded_by="XM_054055751.1:3755..6127"
                     /db_xref="GeneID:128850761"
ORIGIN      
        1 mmkypfirfp alkvlslaev vrvwdtvsey mlqqialnkg vaidglgvfy vlrqhyskln
       61 gdvlapkfhl legvmqaqri shanrdvpdd lqvvpldysq lslkttvsek mveecvndlv
      121 vlftwgaglg edydlvfkgi gilrsrdnil rmtyykdfll aidgtgtvln cmlsnpltri
      181 nvisdndssa fhmspqgirv lpmfeiklpp grtaedfflm kgsgnkqgtp gsrcqhpqmr
      241 hspgkltrar kakgekestk seefhqllpt wkfqleqqed mveerekgsh pedsvppgrk
      301 fsvrtlpvlk peekvearfe vkppersels qvppltprpp amspgkpdeq grgshpekse
      361 kkgerrqsna cvlteacqfl lcalehgkka llkgshpeks vrngrkhsir tlrtqkpeek
      421 vearfevktp erselsqvpp ltprppemsp gkpdeqgrgs hpekslhpgr kissrtsrdr
      481 raeeekgvsg ltgkpperse llwmphltpr ppkmppgkpd eqgrgshpek nlhpgrkfss
      541 rtsrdrraee ekgvsgltgk ppersellwm phltprppkm ppgkpdehgr gclsekifvn
      601 qgrfwpkisn qfemdlwkgv ykpadsvalq ivgksllkgr tpsqppppgg ahaqgkstca
      661 qsrprlrhcs mdtcglpggv chtspglrws kgrvsrrkqv yvpvkisvql htallaiqqv
      721 gksrrkgwkp ehlwflgcis ssrggvvpsc taffspassr gqdappelce kvpgaasawr
      781 sqeshqplqn
//
LOCUS       XP_053911727             751 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850761 isoform X3 [Cuculus canorus].
ACCESSION   XP_053911727
VERSION     XP_053911727.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055752.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527847) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..751
                     /product="uncharacterized protein LOC128850761 isoform X3"
                     /calculated_mol_wt=83806
     Region          8..68
                     /region_name="HU-CCDC81_euk_1"
                     /note="CCDC81 eukaryotic HU domain 1; pfam14908"
                     /db_xref="CDD:464364"
     Region          92..166
                     /region_name="HU-CCDC81_euk_2"
                     /note="CCDC81 eukaryotic HU domain 2; pfam18289"
                     /db_xref="CDD:465696"
     Region          <325..562
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     CDS             1..751
                     /gene="LOC128850761"
                     /coded_by="XM_054055752.1:3756..6011"
                     /db_xref="GeneID:128850761"
ORIGIN      
        1 mmkypfirfp alkvlslaev vrvwdtvsey mlqqialnkg vaidglgvfy vlrqhyskln
       61 gdvlapkfhl legvmqaqri shanrdvpdd lqvvpldysq lslkttvsek mveecvndlv
      121 vlftwgaglg edydlvfkgi gilrsrdnil rmtyykdfll aidgtgtvln cmlsnpltri
      181 nvisdndssa fhmspqgirv lpmfeiklpp grtaedfflm kgsgnkqvvg tpgsrcqhpq
      241 mrhspgkltr arkakgekes tkseefhqll ptwkfqleqq edmveerekg shpedsvppg
      301 rkfsvrtlpv lkpeekvear fevkpperse lsqvppltpr ppamspgkpd eqgrgshpek
      361 svrngrkhsi rtlrtqkpee kvearfevkt perselsqvp pltprppems pgkpdeqgrg
      421 shpekslhpg rkissrtsrd rraeeekgvs gltgkppers ellwmphltp rppkmppgkp
      481 deqgrgshpe knlhpgrkfs srtsrdrrae eekgvsgltg kppersellw mphltprppk
      541 mppgkpdehg rgclsekifv nqgrfwpkis nqfemdlwkg vykpadsval qivgksllkg
      601 rtpsqppppg gahaqgkstc aqsrprlrhc smdtcglpgg vchtspglrw skgrvsrrkq
      661 vyvpvkisvq lhtallaiqq vgksrrkgwk pehlwflgci sssrggvvps ctaffspass
      721 rgqdappelc ekvpgaasaw rsqeshqplq n
//
LOCUS       XP_053911728             726 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850761 isoform X4 [Cuculus canorus].
ACCESSION   XP_053911728
VERSION     XP_053911728.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055753.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527847) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..726
                     /product="uncharacterized protein LOC128850761 isoform X4"
                     /calculated_mol_wt=80956
     Region          8..68
                     /region_name="HU-CCDC81_euk_1"
                     /note="CCDC81 eukaryotic HU domain 1; pfam14908"
                     /db_xref="CDD:464364"
     Region          92..166
                     /region_name="HU-CCDC81_euk_2"
                     /note="CCDC81 eukaryotic HU domain 2; pfam18289"
                     /db_xref="CDD:465696"
     Region          <232..526
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     CDS             1..726
                     /gene="LOC128850761"
                     /coded_by="XM_054055753.1:3756..5936"
                     /db_xref="GeneID:128850761"
ORIGIN      
        1 mmkypfirfp alkvlslaev vrvwdtvsey mlqqialnkg vaidglgvfy vlrqhyskln
       61 gdvlapkfhl legvmqaqri shanrdvpdd lqvvpldysq lslkttvsek mveecvndlv
      121 vlftwgaglg edydlvfkgi gilrsrdnil rmtyykdfll aidgtgtvln cmlsnpltri
      181 nvisdndssa fhmspqgirv lpmfeiklpp grtaedfflm kgsgnkqvvg tpgsrcqhpq
      241 mrhspgkltr arkakgekes tkseefhqll ptwkfqleqq edmveerekg shpedsvppg
      301 rkfsvrtlpv lkpeekvear fevkpperse lsqvppltpr ppamspgkpd eqgrgshpek
      361 sekkgerrqs nacvlteacq fllcalehgk kallkgshpe ksvrngrkhs irtlrtqkpe
      421 ekvearfevk tperselsqv ppltprppem spgkpdeqgr gshpeknlhp grkfssrtsr
      481 drraeeekgv sgltgkpper sellwmphlt prppkmppgk pdehgrgcls ekifvnqgrf
      541 wpkisnqfem dlwkgvykpa dsvalqivgk sllkgrtpsq ppppggahaq gkstcaqsrp
      601 rlrhcsmdtc glpggvchts pglrwskgrv srrkqvyvpv kisvqlhtal laiqqvgksr
      661 rkgwkpehlw flgcisssrg gvvpsctaff spassrgqda ppelcekvpg aasawrsqes
      721 hqplqn
//
LOCUS       XP_053911729             127 aa            linear   VRT 09-MAR-2023
DEFINITION  ceramide synthase 4-like [Cuculus canorus].
ACCESSION   XP_053911729
VERSION     XP_053911729.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055754.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527847) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..127
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..127
                     /product="ceramide synthase 4-like"
                     /calculated_mol_wt=13497
     Region          <4..39
                     /region_name="TRAM_LAG1_CLN8"
                     /note="TLC domain; cl02759"
                     /db_xref="CDD:470668"
     CDS             1..127
                     /gene="LOC104064669"
                     /coded_by="XM_054055754.1:335..718"
                     /db_xref="GeneID:104064669"
ORIGIN      
        1 meifqpffgy yfvnvllipl qllhvfwscl iihmlykfvl qgtaanplaq hpksspsspv
       61 rgckqgylqr rqctrphspd prragdaels gghpsgtspg cpaaagsvls pglatgkaae
      121 vsrtpal
//
LOCUS       XP_053911730             214 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: uridine phosphorylase 1-like [Cuculus
            canorus].
ACCESSION   XP_053911730
VERSION     XP_053911730.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055755.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527848) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 9% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..214
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..214
                     /product="LOW QUALITY PROTEIN: uridine phosphorylase
                     1-like"
                     /calculated_mol_wt=23402
     Region          25..>199
                     /region_name="NP-I"
                     /note="nucleoside phosphorylase-I family; cl00303"
                     /db_xref="CDD:444819"
     CDS             1..214
                     /gene="LOC128850762"
                     /coded_by="XM_054055755.1:1..645"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon"
                     /db_xref="GeneID:128850762"
ORIGIN      
        1 maddrenfih lcnphlekmk egipyhfalg tsthdfpalf gdvkfvcvgg npswvktfia
       61 yvaeelglgs pgsdypnixd hytvyevrpv lsvchgmgip sisimlheli kllyrakcsn
      121 itiirictcg giglepgsvv itrqsggatf kpqfeqvvlg ktvirntdld eqlakelmqc
      181 rkevrqyntg igntrctldc sggeasnslt kvyw
//
LOCUS       XP_053911731             439 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein J1-B-like [Cuculus canorus].
ACCESSION   XP_053911731
VERSION     XP_053911731.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055756.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527848) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..439
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..439
                     /product="forkhead box protein J1-B-like"
                     /calculated_mol_wt=48198
     Region          <46..324
                     /region_name="COG5025"
                     /note="Transcription factor of the Forkhead/HNF3 family
                     [Transcription]"
                     /db_xref="CDD:227358"
     Region          123..200
                     /region_name="FH_FOXJ1"
                     /note="Forkhead (FH) domain found in Forkhead box protein
                     J1 (FOXJ1) and similar proteins; cd20023"
                     /db_xref="CDD:410797"
     Site            order(128,146..147,150,169..170,172..173,176,183,193..195,
                     197)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410797"
     CDS             1..439
                     /gene="LOC128850763"
                     /coded_by="XM_054055756.1:1..1320"
                     /db_xref="GeneID:128850763"
ORIGIN      
        1 maegrlsheq agkdrgqegi vrdsphkdds lpnltwlldf sitsasmgss sccpsgpdph
       61 tcqgmpgsav pcsplgtdpa cvgtphtpcv pissstsmte hhvvsmhpql megidyksnp
      121 yiklpysyat lirmamease ephitlsaiy kwitnnfcyf rqadpgwqns irhnlssnkc
      181 fikvprekgk pgrdgfwkld lqyadrlksg afkkqrmrpv qihpasteka qqeaqcgasl
      241 vtlgcaskkv fsvsmesqql leefeefikn qnqnpvdika glkrkqplpk qtakvrrlsn
      301 salltqeeqt qlgslkgdld nnlnrefsss gdlevtppvs pkkhnlevmv hgqhidcpqg
      361 leqvlsesnq ndlsldesst aasflqhlfd egasdslsna vkveqlfdis disvpadgsd
      421 wsslvsllrp vtlqsphml
//
LOCUS       XP_053911733             804 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein homolog [Cuculus canorus].
ACCESSION   XP_053911733
VERSION     XP_053911733.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055758.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527848) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 39% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..804
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..804
                     /product="hydrocephalus-inducing protein homolog"
                     /calculated_mol_wt=90512
     CDS             1..804
                     /gene="LOC128850764"
                     /coded_by="XM_054055758.1:1..2415"
                     /db_xref="GeneID:128850764"
ORIGIN      
        1 matreicqrm gadgfqnkva aprdrklvrk aekpvtvtts cgqmtpafmk ekssttkqsl
       61 satqevklpq iaqlrdmrea shpkmtpafm keksritkqs lsatqelklp qiaqlrdmre
      121 ashpkmtpaf mkekssttkq slsatqelkl pqiaqlrdmr eashpkmtpa fmkekssttk
      181 qslaatqelk lpqiaqfqdm reashpkmtp afmkeksrnt kqslsatqel klpqiaqlrd
      241 mreashpkma pafmkeksci tkqslsatqe vklpqiaqlr dtreashpkm tpsafmkeks
      301 lttkqslats qelklpritq lrdiseashh kfstvdldrg lfqplpsevv fqsyvphevy
      361 emplvlrnvd kvpqrlkivm esslyfkldv psgmcrkvap gmttsfhilf tpeenkdyfh
      421 qltciterem fnvpiraiga raildfpdql nfsicpvkys tqktllvrnv gnrearycis
      481 tqspfsvnps iwnlgigeat qvtvefhple tgdhsgslvv hydtgeaiht slygvavdvn
      541 iglersslki ektyltlsnr stvvlrnqse itahfqwksf asqgkedqek lrlchklqrh
      601 nenmdyflld ctenpilpgd lpllsaifke kmsqvqrdpm lfsddvftid pvegdvlpns
      661 sieinvifkp qeatvyqkmv ycdvsgretr lplciegegi epqlrlsfeq ldigkvfvgs
      721 tniyevilfn kgavdasfil vhpttalasc ftfvpregti spdglqviki sfssnilgkf
      781 kkafkfrmkg spefvtltir sggi
//
LOCUS       XP_053911734             274 aa            linear   VRT 09-MAR-2023
DEFINITION  germinal-center associated nuclear protein-like [Cuculus canorus].
ACCESSION   XP_053911734
VERSION     XP_053911734.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055759.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527848) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 10% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..274
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..274
                     /product="germinal-center associated nuclear protein-like"
                     /calculated_mol_wt=29869
     Region          174..245
                     /region_name="RRM_MCM3A_like"
                     /note="RNA recognition motif (RRM) found in 80 kDa
                     MCM3-associated protein (Map80) and similar proteins;
                     cd12443"
                     /db_xref="CDD:409877"
     CDS             1..274
                     /gene="LOC128850765"
                     /coded_by="XM_054055759.1:182..1006"
                     /db_xref="GeneID:128850765"
ORIGIN      
        1 mssgtpfrgp fgqatafgqa gsgaaaapsg vpvaglaapl gsaqfsfrpp rdlsarfqaa
       61 aaegplwfar peeqsprrgv krkeeqecpr pekramvlsr prvgalfgss mqellrsqrr
      121 gqrdrhdpdp erqpgpeppa aprdaprhda taarrargse saegsgglnp aeltsiqckn
      181 vpdhlndrtv lekhfrqfgk vrrvltrrnk kmavvhffdh asaalarkka kelhkgiitf
      241 wqkkktsksv fpendtpmvs iagmlqlqky ngsl
//
LOCUS       XP_053911735             218 aa            linear   VRT 09-MAR-2023
DEFINITION  germinal-center associated nuclear protein-like [Cuculus canorus].
ACCESSION   XP_053911735
VERSION     XP_053911735.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055760.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527848) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 5% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..218
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..218
                     /product="germinal-center associated nuclear protein-like"
                     /calculated_mol_wt=24265
     Region          1..>207
                     /region_name="MCM3AP_GANP"
                     /note="MCM3AP domain of GANP; pfam16769"
                     /db_xref="CDD:465265"
     CDS             1..218
                     /gene="LOC128850766"
                     /coded_by="XM_054055760.1:51..707"
                     /db_xref="GeneID:128850766"
ORIGIN      
        1 mgdknwrknt lhtegriqtl alfnspgmhg srsikvgvci kvahgalsdc eldtaemqed
       61 llgtsglilv lpprvrsedv aeddaywlsa flqlkqllqa kpfrpsvplv vlvpgqeeea
      121 tekeveeglm lqdlisaqli sdytivelpg sindlqgtrr iskavgwlvs qypsslelcs
      181 qtlqeyvedg ivcefgtrfy rdwkerrklp lltstsmd
//
LOCUS       XP_053911736             513 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 36-like [Cuculus canorus].
ACCESSION   XP_053911736
VERSION     XP_053911736.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055761.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527848) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 27% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..513
                     /product="ubiquitin carboxyl-terminal hydrolase 36-like"
                     /calculated_mol_wt=57412
     Region          212..512
                     /region_name="Peptidase_C19E"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02661"
                     /db_xref="CDD:239126"
     Site            order(217,222,473,490)
                     /site_type="active"
                     /db_xref="CDD:239126"
     CDS             1..513
                     /gene="LOC128850767"
                     /coded_by="XM_054055761.1:1..1542"
                     /db_xref="GeneID:128850767"
ORIGIN      
        1 mpppvnprsa lyssrkaerg dtgrvrcrra pvrsgdtcae rrrrgsvsva gqdgtaprrq
       61 grggagreal gdrggdrmgr pggagegers gplpwprdaa rrsgtlwrpp rpldrplrsp
      121 qppgsaiaie eqrkdckdgr klhqelatpf qapqqkkmem eptkhsaseq lnrlqgsehv
      181 pgiqsdgipa pkkvlfpver lslkwqrthp igaglqnlgn tcflnstvqc ltytpplany
      241 llsrehsrtc qrgefcmlct mekhvlqvfs ssgsaiqpta fvrnikkiat hirlgrqeda
      301 heflsftina mqracldgct qldqqsqttt lvhqifggfl rsrvmcrvcn wpsdtyepfl
      361 dlaveieeae sieqalklfv rpemlceena ymcnkcqtkv qaikrfsihr assvlivslk
      421 rfsifsgdki kkdvtypevl dirpylseak gdpmnyelya vlvhsgysch sghyycyvka
      481 sdgqwyqmnd atvglttikv vlnqqayvlf ylr
//
LOCUS       XP_053911737            1718 aa            linear   VRT 09-MAR-2023
DEFINITION  germinal-center associated nuclear protein-like [Cuculus canorus].
ACCESSION   XP_053911737
VERSION     XP_053911737.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055762.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527848) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1718
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1718
                     /product="germinal-center associated nuclear protein-like"
                     /calculated_mol_wt=192334
     Region          185..256
                     /region_name="RRM_MCM3A_like"
                     /note="RNA recognition motif (RRM) found in 80 kDa
                     MCM3-associated protein (Map80) and similar proteins;
                     cd12443"
                     /db_xref="CDD:409877"
     Region          399..688
                     /region_name="SAC3_GANP"
                     /note="SAC3/GANP family; pfam03399"
                     /db_xref="CDD:460911"
     Region          904..974
                     /region_name="CID_GANP"
                     /note="Binding region of GANP to ENY2; pfam16766"
                     /db_xref="CDD:465264"
     Region          1002..1714
                     /region_name="MCM3AP_GANP"
                     /note="MCM3AP domain of GANP; pfam16769"
                     /db_xref="CDD:465265"
     CDS             1..1718
                     /gene="LOC128850768"
                     /coded_by="XM_054055762.1:1..5157"
                     /db_xref="GeneID:128850768"
ORIGIN      
        1 mssgtpfrgp fgpaaafgqa gsgaaaafgq agsgaaaaps gvpvaglaap lgsaqfsfrp
       61 prdlsarfqa aaaegplwfa rpeeqsprrg vkrkeerecs rpekravvlw qpragalfgg
      121 smqellrsqr rghrdrhdpd perqpgpepp aaprdaprhd ataarrargs esaegsggln
      181 paeltsiqck nvpdhlndrt vlekhfgqfg kvrrvltrrd kkmavvhffd hasaalarkk
      241 akelhkgivt fwqkkktsks vfpgpakgef sskekkaged egrqsdeeqn yqhsplrktl
      301 irspasgvmp gtsspakkpn lrkalqfegd lldssseaqs sdalgvslpp lsnlvglvae
      361 tseeryrlld rrdkimrqar lkrtnlgkak tvvgtcpdmc pekerymres rnqlsifell
      421 pgsdkvdhaa aikeysrssa dqeeplphel rpsevlsmtm dylvtnimdq gegnyrewyd
      481 fvwnrtrgir kditqqhlcn pltvsliekc trfhihcahh lceepmssfd aklnnenmtk
      541 clqslkemyq dlankgvyck sesefrgynv llnlnkgdil revqqfrpev rnspevrfav
      601 qafaalnsnn fvrffklvqa asylnacllh cyfsqirkda lkslniaytv strrstvfpl
      661 dhlvrillfk dgeeatdfis yyglsvsega yvelnrsafl epnglpkphk smfvsqkltv
      721 svgevvnggp lpsvphhvpv ssfnqqneys sgstsvdqak grmegkgmdl datavevqta
      781 ahllpslsph qlvpllplaq avsqpagqpe pqplytdtdi aevvdglvqd vlkgecrevg
      841 ragvayvtaa vcvseatvee lvteaveeil rqvagsmlsa erervkeerr rveeerqkqe
      901 reqlikhlsq lvgmelmeev ikesvqedsa nqlkyalerd rqariarcse evsghvmdlf
      961 ledeifqiak etlqelqcfy kylqrwreav aarrklkrqm rafpaapccv dlknslkals
     1021 psaewpisre nlckgmvdlg hggklgisct rlnllrdkta hemkvqhfyq qllsdlawtp
     1081 ldlvsliaeh ipveqeqvfw kvllvlpsde eyakddhsrv lvdwlkvkfm gdknwrkntl
     1141 htegriqtlt lfnspgmhgs rsikvgvcik vaqgalsdce ldtaemqedl lgtsglilvl
     1201 pprvrsedva eddaywlsal lrlkqllqak pfhpsvplvv lvpgqeeate keveeglmlq
     1261 dlisaqlisd ytivelpgsi ndlqgtrris kavgwlvsqy pnclelcsqt lqeyvedgia
     1321 cefgkrfyhd wkerrsaglp sqepgviiel ynsvlqflsd vassehlcdl swpitefsep
     1381 ggnkllphlh wnmpdhlawl kkavlffqip yldlpplgap wrpvchmilq yasqiassss
     1441 trplilsqve nllsktyqkw enntcgnsde dgpsvddipw dailaacidh klrdwkppel
     1501 piapeavsdd gqirvyffke hlknftlpfa weqarlrtqe eirqghersr ikrpkssekp
     1561 ysiskmsgry gydvsvlsgq eksltsagef tetasdkell pahllaqlqm erresrrfee
     1621 qlhqclaedm eplgafiglp lylpqclvsn pavtcplvks pvssqeavsr edckrlmkep
     1681 sptlsdrlkh lqqllrvnke aeaaselhls alvdmvni
//
LOCUS       XP_053911738             516 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 36-like [Cuculus canorus].
ACCESSION   XP_053911738
VERSION     XP_053911738.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055763.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527848) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 26% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..516
                     /product="ubiquitin carboxyl-terminal hydrolase 36-like"
                     /calculated_mol_wt=57755
     Region          215..515
                     /region_name="Peptidase_C19E"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02661"
                     /db_xref="CDD:239126"
     Site            order(220,225,476,493)
                     /site_type="active"
                     /db_xref="CDD:239126"
     CDS             1..516
                     /gene="LOC128850769"
                     /coded_by="XM_054055763.1:1..1551"
                     /db_xref="GeneID:128850769"
ORIGIN      
        1 mpppvnprsa lypsrkaerg dtgrvrcrra pvrsgdtcae rrrrgsvsva grsgtagtap
       61 rrqgrggagr ealgdrggdr mgrpggageg ersgplpwpr daarwsgtlw rpprpldrpl
      121 rspqppgsai aieehlefgk dgrklhqela tpfqvprqkk mevepiehst seqlnrlqgs
      181 ehvpgmqsng ipapkkvlfp merlslkwqr thligaglqn lgntcflnst vqcltytppl
      241 tnyllsrehs rtcqrgefcm lctmekhvlq vfsssgsaiq ptafvrnikk iathihlgrq
      301 edaheflsft inamqracld gctqldqqsq tttlvhqifg gflrsrvmcr vcnwpsdtye
      361 pfldlaveie eaesieqalk lfvrpemlce enaymcnkcq tkvqaikrfs ihqasgvliv
      421 slkrfsifsg dkikkdvtyp evldirsyls eakgdpmnye lyavlvhsgy schsghyycy
      481 vkasdgqwyq mndatvcltt ikvvlnqqay vlfylr
//
LOCUS       XP_053911740             464 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: cell division cycle protein 20 homolog
            [Cuculus canorus].
ACCESSION   XP_053911740
VERSION     XP_053911740.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055765.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527848) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..464
                     /product="LOW QUALITY PROTEIN: cell division cycle protein
                     20 homolog"
                     /calculated_mol_wt=50828
     Region          156..193
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <166..436
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          198..235
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          241..276
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          281..322
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          329..367
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          372..404
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..464
                     /gene="LOC128850771"
                     /coded_by="XM_054055765.1:217..1611"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     substituted 1 base at 1 genomic stop codon"
                     /db_xref="GeneID:128850771"
ORIGIN      
        1 mwqstgfavs grlwsgllrr hktiamcvna gkegsrmqrt qrivgpdryi pscsaldmdv
       61 akflltgqkd aaevsaakke rqraraviln gfdveeakil glsgkaqsta sgfqnnlkal
      121 yrhqvmpgsi rrkgrlissa adrilgapdi rddcyltfld wstqnllala ldttvylwdh
      181 tsgetinlme teyadgyvss vswgnggdcl avgtsngevq lwditrqkrl rtltshvsrv
      241 gclswnsyil ssgsrsglih hhdvrvaqhh avtlaghtwe vcglqwsldg rylasggddh
      301 vvnvwpsiqg ghggfapvqt fcqhqdavka vawcpwqfsi latgggasdk rirlxnvcsg
      361 sclsnvdars qvssilwstn ykelisghge nqlviwkypa mskvtelrgr vlsmalspdg
      421 etvasvagde tlrlwrcfqm dpimkkekek anrvissilh qair
//
LOCUS       XP_053911741             153 aa            linear   VRT 09-MAR-2023
DEFINITION  germinal-center associated nuclear protein-like [Cuculus canorus].
ACCESSION   XP_053911741
VERSION     XP_053911741.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055766.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527848) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..153
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..153
                     /product="germinal-center associated nuclear protein-like"
                     /calculated_mol_wt=16884
     Region          <10..149
                     /region_name="MCM3AP_GANP"
                     /note="MCM3AP domain of GANP; pfam16769"
                     /db_xref="CDD:465265"
     CDS             1..153
                     /gene="LOC128850774"
                     /coded_by="XM_054055766.1:1147..1608"
                     /db_xref="GeneID:128850774"
ORIGIN      
        1 msgqcgydls vlsgqekslt sageftetas dkellparll aqlqmerres rrfeeqlhrr
       61 laedmeplga figlplylpe slvsnpavtc plvkspvssq etvsredckr lmkepsatls
      121 drlkllqqll rankeaeaas elhlstlvdm vni
//
LOCUS       XP_053911742             133 aa            linear   VRT 09-MAR-2023
DEFINITION  germinal-center associated nuclear protein-like [Cuculus canorus].
ACCESSION   XP_053911742
VERSION     XP_053911742.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055767.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527848) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..133
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..133
                     /product="germinal-center associated nuclear protein-like"
                     /calculated_mol_wt=14776
     Region          64..>112
                     /region_name="RRM_SF"
                     /note="RNA recognition motif (RRM) superfamily; cl17169"
                     /db_xref="CDD:473069"
     CDS             1..133
                     /gene="LOC128850779"
                     /coded_by="XM_054055767.1:2..403"
                     /db_xref="GeneID:128850779"
ORIGIN      
        1 mqellrsqrr gqrdrhdpdp erqpgpeppa aprdaprhda taarrargse saegsgglnp
       61 aeltsiqckn vpdhlndrtv lekhfgqfgk vrrvltrrnk kmavvhffdh vsiesdgcrs
      121 rrgskcpgqg llr
//
LOCUS       XP_053911743             431 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: forkhead box protein J1-B-like [Cuculus
            canorus].
ACCESSION   XP_053911743
VERSION     XP_053911743.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055768.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 3% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..431
                     /product="LOW QUALITY PROTEIN: forkhead box protein
                     J1-B-like"
                     /calculated_mol_wt=47350
     Region          <53..327
                     /region_name="COG5025"
                     /note="Transcription factor of the Forkhead/HNF3 family
                     [Transcription]"
                     /db_xref="CDD:227358"
     Region          130..205
                     /region_name="FH_FOX"
                     /note="Forkhead (FH) domain found in Forkhead box (FOX)
                     family of transcription factors and similar proteins;
                     cl00061"
                     /db_xref="CDD:469596"
     Site            order(135,153..154,157,174..175,177..178,181,188,198..200,
                     202)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410788"
     CDS             1..431
                     /gene="LOC128850781"
                     /coded_by="XM_054055768.1:1..1296"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon"
                     /db_xref="GeneID:128850781"
ORIGIN      
        1 mcihlpgkae gwlsheqagk drgqegivrd spdmddslpn ltwlldfsit sasmgnsscc
       61 psgpdphtcq gmpgsavpcs plgtdpacmg tpqtpcvpvs sstsmtehhv vsmhpqmmeg
      121 idyksnpyik lpysyatlir mamesseeph itlstiykwi tnnfcyfyqa dtgnsirhnl
      181 ssnkcfikvp rekgkpgrgg fwrldlqyad rlknsafkkq rmrpvqihpg stekaqqeaq
      241 cgastatlgc asnrvfvvnm esqqllkefe evisnqnwnp vdgkaglkrk qplpkxkvrr
      301 lsnsalltqe eqtqlgslkg dsdtnlnref stsgdlevmp pvspqkhnle vvvhgqhidc
      361 pqelrqvlse snqnglslde scmaasflqh lfdegtndsl snsvnveqlf evidaflpad
      421 vrdqcslasl l
//
LOCUS       XP_053911744             375 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein-like [Cuculus canorus].
ACCESSION   XP_053911744
VERSION     XP_053911744.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055769.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 38% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..375
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..375
                     /product="hydrocephalus-inducing protein-like"
                     /calculated_mol_wt=41765
     Region          117..214
                     /region_name="DUF1573"
                     /note="Protein of unknown function (DUF1573); cl44563"
                     /db_xref="CDD:479786"
     CDS             1..375
                     /gene="LOC128850782"
                     /coded_by="XM_054055769.1:1..1128"
                     /db_xref="GeneID:128850782"
ORIGIN      
        1 mshlwvgswl hevlepaaeq srparcllqs tipvfqsppp tavkaegtae tqslvfhilp
       61 lygvlqpsqs qrvaftffgr anivahimal crveggptye valsgeasli nyllditeid
      121 yglqlfnkva eaevtlrnng kmgftytvln psmatadcpq preplvvpst gylepgkeqv
      181 lkvyylpgvp gvffrtfqvq vghlepveis lkgegnfprf sldlprnikg nekyekvlke
      241 akekmeqdnq rdqavvlgea vaaepltdss dimlepwlqm qmedllleeh aleqqkalas
      301 napedsafgq hayrrllevv fpqkskvddd ivfkqyvmdt dvfhfgepsc ghasrycqge
      361 ditcsefvqi ldtwg
//
LOCUS       XP_053911746             294 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane and coiled-coil domain-containing protein 4-like
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053911746
VERSION     XP_053911746.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055771.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..294
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..294
                     /product="transmembrane and coiled-coil domain-containing
                     protein 4-like isoform X1"
                     /calculated_mol_wt=31227
     Region          208..>273
                     /region_name="alpha/beta hydrolases"
                     /note="A functionally diverse superfamily containing
                     proteases, lipases, peroxidases, esterases, epoxide
                     hydrolases and dehalogenases. The catalytic apparatus
                     typically involves three residues (catalytic triad): a
                     serine, a glutamate or aspartate and a...; cl21494"
                     /db_xref="CDD:473884"
     CDS             1..294
                     /gene="LOC128850783"
                     /coded_by="XM_054055771.1:673..1557"
                     /db_xref="GeneID:128850783"
ORIGIN      
        1 mreandfppa vlvphqvkma aeekwkgwps kqhsraerag gkepcvllaq qlgepgrfay
       61 aalcgislaw lfpekeqssf rtgfiegfvk wldlpeavlp amtafasglg gegtemftqi
      121 llkdpflken pvvitqdlls fslrdgyyda rarvlichit wllripseel ealeeslles
      181 lkeqkkeese taevsrkkke rrkklksyll iglatvgggt vigltgglaa plvaagaati
      241 igsagaaala stagiavmas lfgaagaglt gkgetthfsa tadkvmsanv epit
//
LOCUS       XP_053911747             290 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane and coiled-coil domain-containing protein 4-like
            isoform X2 [Cuculus canorus].
ACCESSION   XP_053911747
VERSION     XP_053911747.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055772.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..290
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..290
                     /product="transmembrane and coiled-coil domain-containing
                     protein 4-like isoform X2"
                     /calculated_mol_wt=30635
     Region          204..>269
                     /region_name="alpha/beta hydrolases"
                     /note="A functionally diverse superfamily containing
                     proteases, lipases, peroxidases, esterases, epoxide
                     hydrolases and dehalogenases. The catalytic apparatus
                     typically involves three residues (catalytic triad): a
                     serine, a glutamate or aspartate and a...; cl21494"
                     /db_xref="CDD:473884"
     CDS             1..290
                     /gene="LOC128850783"
                     /coded_by="XM_054055772.1:16..888"
                     /db_xref="GeneID:128850783"
ORIGIN      
        1 mlgipelgtg lqvkmaaeek wkgwpskqhs raeraggkep cvllaqqlge pgrfayaalc
       61 gislawlfpe keqssfrtgf iegfvkwldl peavlpamta fasglggegt emftqillkd
      121 pflkenpvvi tqdllsfslr dgyydararv lichitwllr ipseeleale eslleslkeq
      181 kkeesetaev srkkkerrkk lksylligla tvgggtvigl tgglaaplva agaatiigsa
      241 gaaalastag iavmaslfga agagltgkge tthfsatadk vmsanvepit
//
LOCUS       XP_053911748             276 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane and coiled-coil domain-containing protein 4-like
            isoform X3 [Cuculus canorus].
ACCESSION   XP_053911748
VERSION     XP_053911748.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055773.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..276
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..276
                     /product="transmembrane and coiled-coil domain-containing
                     protein 4-like isoform X3"
                     /calculated_mol_wt=29197
     Region          190..>255
                     /region_name="alpha/beta hydrolases"
                     /note="A functionally diverse superfamily containing
                     proteases, lipases, peroxidases, esterases, epoxide
                     hydrolases and dehalogenases. The catalytic apparatus
                     typically involves three residues (catalytic triad): a
                     serine, a glutamate or aspartate and a...; cl21494"
                     /db_xref="CDD:473884"
     CDS             1..276
                     /gene="LOC128850783"
                     /coded_by="XM_054055773.1:129..959"
                     /db_xref="GeneID:128850783"
ORIGIN      
        1 maaeekwkgw pskqhsraer aggkepcvll aqqlgepgrf ayaalcgisl awlfpekeqs
       61 sfrtgfiegf vkwldlpeav lpamtafasg lggegtemft qillkdpflk enpvvitqdl
      121 lsfslrdgyy dararvlich itwllripse elealeesll eslkeqkkee setaevsrkk
      181 kerrkklksy lliglatvgg gtvigltggl aaplvaagaa tiigsagaaa lastagiavm
      241 aslfgaagag ltgkgetthf satadkvmsa nvepit
//
LOCUS       XP_053911749             276 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane and coiled-coil domain-containing protein 4-like
            isoform X3 [Cuculus canorus].
ACCESSION   XP_053911749
VERSION     XP_053911749.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055774.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..276
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..276
                     /product="transmembrane and coiled-coil domain-containing
                     protein 4-like isoform X3"
                     /calculated_mol_wt=29197
     Region          190..>255
                     /region_name="alpha/beta hydrolases"
                     /note="A functionally diverse superfamily containing
                     proteases, lipases, peroxidases, esterases, epoxide
                     hydrolases and dehalogenases. The catalytic apparatus
                     typically involves three residues (catalytic triad): a
                     serine, a glutamate or aspartate and a...; cl21494"
                     /db_xref="CDD:473884"
     CDS             1..276
                     /gene="LOC128850783"
                     /coded_by="XM_054055774.1:121..951"
                     /db_xref="GeneID:128850783"
ORIGIN      
        1 maaeekwkgw pskqhsraer aggkepcvll aqqlgepgrf ayaalcgisl awlfpekeqs
       61 sfrtgfiegf vkwldlpeav lpamtafasg lggegtemft qillkdpflk enpvvitqdl
      121 lsfslrdgyy dararvlich itwllripse elealeesll eslkeqkkee setaevsrkk
      181 kerrkklksy lliglatvgg gtvigltggl aaplvaagaa tiigsagaaa lastagiavm
      241 aslfgaagag ltgkgetthf satadkvmsa nvepit
//
LOCUS       XP_053911750             276 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane and coiled-coil domain-containing protein 4-like
            isoform X4 [Cuculus canorus].
ACCESSION   XP_053911750
VERSION     XP_053911750.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055775.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..276
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..276
                     /product="transmembrane and coiled-coil domain-containing
                     protein 4-like isoform X4"
                     /calculated_mol_wt=29475
     Region          208..>271
                     /region_name="alpha/beta hydrolases"
                     /note="A functionally diverse superfamily containing
                     proteases, lipases, peroxidases, esterases, epoxide
                     hydrolases and dehalogenases. The catalytic apparatus
                     typically involves three residues (catalytic triad): a
                     serine, a glutamate or aspartate and a...; cl21494"
                     /db_xref="CDD:473884"
     CDS             1..276
                     /gene="LOC128850783"
                     /coded_by="XM_054055775.1:673..1503"
                     /db_xref="GeneID:128850783"
ORIGIN      
        1 mreandfppa vlvphqvkma aeekwkgwps kqhsraerag gkepcvllaq qlgepgrfay
       61 aalcgislaw lfpekeqssf rtgfiegfvk wldlpeavlp amtafasglg gegtemftqi
      121 llkdpflken pvvitqdlls fslrdgyyda rarvlichit wllripseel ealeeslles
      181 lkeqkkeese taevsrkkke rrkklksyll iglatvgggt vigltgglaa plvaagaati
      241 igsagaaala stagiavmas lfgaagaglt vfakef
//
LOCUS       XP_053911751             869 aa            linear   VRT 09-MAR-2023
DEFINITION  fas-binding factor 1 homolog isoform X1 [Cuculus canorus].
ACCESSION   XP_053911751
VERSION     XP_053911751.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055776.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..869
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..869
                     /product="fas-binding factor 1 homolog isoform X1"
                     /calculated_mol_wt=97991
     Region          <228..>343
                     /region_name="PRK07764"
                     /note="DNA polymerase III subunits gamma and tau;
                     Validated"
                     /db_xref="CDD:236090"
     Region          <382..>702
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..869
                     /gene="LOC128850784"
                     /coded_by="XM_054055776.1:245..2854"
                     /db_xref="GeneID:128850784"
ORIGIN      
        1 maaklkrdfg deapakptra sqlggraqst svqaskksfl kddfisklpa edtgaaegsg
       61 asdadtqavl qtlkdieeme ayllgiskps sgprktsvkg agkhdslega gkppthekep
      121 pqtplhtatp vqrrrrqelt leedgddlln alglgsglkg dgqqgkkage eelrparskl
      181 dellgrgsma kvleqsvmgn rkefqlgkky qkqpekeegc keedfvfgay qpsvastvkh
      241 rparrpsvrq tatstgalqq aaasqekvat adgsrqpipw lstpkpapah pseaankvps
      301 rdtsalvpta lilgeqetps sqvatprahl qavpqqqvrt leleqaqhrl lleslqqwhr
      361 edlelfesah rswvkvmeet crqreerlrq ekeqlmaqll sqsqdaeqaq aelvaqhqqc
      421 latleqqrtl eleqqrtlel eqlrelqrsl ngvieqfssd lhnllhkvea rhhstghcdq
      481 qlkvlqdwms qqqrdmeerl sqkaqeviar metrlgehtr lleqkrwrat aeqseveslq
      541 hllkeqgqim tqqlsierae leraksalle keksvmqkcs eerqklaaew aevrtqqqls
      601 kewmkhever tlqmhsqreg tilslakeqa dlkirsrelk akeeqlardr elldeawrel
      661 rlekekvnrs alriqqqeek iksmtnlssq kydegeralr eacrmeseqq srlqvtqqhq
      721 hlheantpsp ahlglgppcq gpeplptasl spfswgwgma yqrqqlqnlc ddlpsnsaml
      781 ltteqdlsap vrglstlsaa aphsweavpr lppplrtlpq hsmgrsrety inlellkfqa
      841 qqdhlflene qffleslkka pyhtaphsg
//
LOCUS       XP_053911752             869 aa            linear   VRT 09-MAR-2023
DEFINITION  fas-binding factor 1 homolog isoform X1 [Cuculus canorus].
ACCESSION   XP_053911752
VERSION     XP_053911752.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055777.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..869
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..869
                     /product="fas-binding factor 1 homolog isoform X1"
                     /calculated_mol_wt=97991
     Region          <228..>343
                     /region_name="PRK07764"
                     /note="DNA polymerase III subunits gamma and tau;
                     Validated"
                     /db_xref="CDD:236090"
     Region          <382..>702
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..869
                     /gene="LOC128850784"
                     /coded_by="XM_054055777.1:146..2755"
                     /db_xref="GeneID:128850784"
ORIGIN      
        1 maaklkrdfg deapakptra sqlggraqst svqaskksfl kddfisklpa edtgaaegsg
       61 asdadtqavl qtlkdieeme ayllgiskps sgprktsvkg agkhdslega gkppthekep
      121 pqtplhtatp vqrrrrqelt leedgddlln alglgsglkg dgqqgkkage eelrparskl
      181 dellgrgsma kvleqsvmgn rkefqlgkky qkqpekeegc keedfvfgay qpsvastvkh
      241 rparrpsvrq tatstgalqq aaasqekvat adgsrqpipw lstpkpapah pseaankvps
      301 rdtsalvpta lilgeqetps sqvatprahl qavpqqqvrt leleqaqhrl lleslqqwhr
      361 edlelfesah rswvkvmeet crqreerlrq ekeqlmaqll sqsqdaeqaq aelvaqhqqc
      421 latleqqrtl eleqqrtlel eqlrelqrsl ngvieqfssd lhnllhkvea rhhstghcdq
      481 qlkvlqdwms qqqrdmeerl sqkaqeviar metrlgehtr lleqkrwrat aeqseveslq
      541 hllkeqgqim tqqlsierae leraksalle keksvmqkcs eerqklaaew aevrtqqqls
      601 kewmkhever tlqmhsqreg tilslakeqa dlkirsrelk akeeqlardr elldeawrel
      661 rlekekvnrs alriqqqeek iksmtnlssq kydegeralr eacrmeseqq srlqvtqqhq
      721 hlheantpsp ahlglgppcq gpeplptasl spfswgwgma yqrqqlqnlc ddlpsnsaml
      781 ltteqdlsap vrglstlsaa aphsweavpr lppplrtlpq hsmgrsrety inlellkfqa
      841 qqdhlflene qffleslkka pyhtaphsg
//
LOCUS       XP_053911753             869 aa            linear   VRT 09-MAR-2023
DEFINITION  fas-binding factor 1 homolog isoform X1 [Cuculus canorus].
ACCESSION   XP_053911753
VERSION     XP_053911753.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055778.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..869
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..869
                     /product="fas-binding factor 1 homolog isoform X1"
                     /calculated_mol_wt=97991
     Region          <228..>343
                     /region_name="PRK07764"
                     /note="DNA polymerase III subunits gamma and tau;
                     Validated"
                     /db_xref="CDD:236090"
     Region          <382..>702
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..869
                     /gene="LOC128850784"
                     /coded_by="XM_054055778.1:146..2755"
                     /db_xref="GeneID:128850784"
ORIGIN      
        1 maaklkrdfg deapakptra sqlggraqst svqaskksfl kddfisklpa edtgaaegsg
       61 asdadtqavl qtlkdieeme ayllgiskps sgprktsvkg agkhdslega gkppthekep
      121 pqtplhtatp vqrrrrqelt leedgddlln alglgsglkg dgqqgkkage eelrparskl
      181 dellgrgsma kvleqsvmgn rkefqlgkky qkqpekeegc keedfvfgay qpsvastvkh
      241 rparrpsvrq tatstgalqq aaasqekvat adgsrqpipw lstpkpapah pseaankvps
      301 rdtsalvpta lilgeqetps sqvatprahl qavpqqqvrt leleqaqhrl lleslqqwhr
      361 edlelfesah rswvkvmeet crqreerlrq ekeqlmaqll sqsqdaeqaq aelvaqhqqc
      421 latleqqrtl eleqqrtlel eqlrelqrsl ngvieqfssd lhnllhkvea rhhstghcdq
      481 qlkvlqdwms qqqrdmeerl sqkaqeviar metrlgehtr lleqkrwrat aeqseveslq
      541 hllkeqgqim tqqlsierae leraksalle keksvmqkcs eerqklaaew aevrtqqqls
      601 kewmkhever tlqmhsqreg tilslakeqa dlkirsrelk akeeqlardr elldeawrel
      661 rlekekvnrs alriqqqeek iksmtnlssq kydegeralr eacrmeseqq srlqvtqqhq
      721 hlheantpsp ahlglgppcq gpeplptasl spfswgwgma yqrqqlqnlc ddlpsnsaml
      781 ltteqdlsap vrglstlsaa aphsweavpr lppplrtlpq hsmgrsrety inlellkfqa
      841 qqdhlflene qffleslkka pyhtaphsg
//
LOCUS       XP_053911754             869 aa            linear   VRT 09-MAR-2023
DEFINITION  fas-binding factor 1 homolog isoform X1 [Cuculus canorus].
ACCESSION   XP_053911754
VERSION     XP_053911754.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055779.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..869
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..869
                     /product="fas-binding factor 1 homolog isoform X1"
                     /calculated_mol_wt=97991
     Region          <228..>343
                     /region_name="PRK07764"
                     /note="DNA polymerase III subunits gamma and tau;
                     Validated"
                     /db_xref="CDD:236090"
     Region          <382..>702
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..869
                     /gene="LOC128850784"
                     /coded_by="XM_054055779.1:157..2766"
                     /db_xref="GeneID:128850784"
ORIGIN      
        1 maaklkrdfg deapakptra sqlggraqst svqaskksfl kddfisklpa edtgaaegsg
       61 asdadtqavl qtlkdieeme ayllgiskps sgprktsvkg agkhdslega gkppthekep
      121 pqtplhtatp vqrrrrqelt leedgddlln alglgsglkg dgqqgkkage eelrparskl
      181 dellgrgsma kvleqsvmgn rkefqlgkky qkqpekeegc keedfvfgay qpsvastvkh
      241 rparrpsvrq tatstgalqq aaasqekvat adgsrqpipw lstpkpapah pseaankvps
      301 rdtsalvpta lilgeqetps sqvatprahl qavpqqqvrt leleqaqhrl lleslqqwhr
      361 edlelfesah rswvkvmeet crqreerlrq ekeqlmaqll sqsqdaeqaq aelvaqhqqc
      421 latleqqrtl eleqqrtlel eqlrelqrsl ngvieqfssd lhnllhkvea rhhstghcdq
      481 qlkvlqdwms qqqrdmeerl sqkaqeviar metrlgehtr lleqkrwrat aeqseveslq
      541 hllkeqgqim tqqlsierae leraksalle keksvmqkcs eerqklaaew aevrtqqqls
      601 kewmkhever tlqmhsqreg tilslakeqa dlkirsrelk akeeqlardr elldeawrel
      661 rlekekvnrs alriqqqeek iksmtnlssq kydegeralr eacrmeseqq srlqvtqqhq
      721 hlheantpsp ahlglgppcq gpeplptasl spfswgwgma yqrqqlqnlc ddlpsnsaml
      781 ltteqdlsap vrglstlsaa aphsweavpr lppplrtlpq hsmgrsrety inlellkfqa
      841 qqdhlflene qffleslkka pyhtaphsg
//
LOCUS       XP_053911755             868 aa            linear   VRT 09-MAR-2023
DEFINITION  fas-binding factor 1 homolog isoform X2 [Cuculus canorus].
ACCESSION   XP_053911755
VERSION     XP_053911755.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055780.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..868
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..868
                     /product="fas-binding factor 1 homolog isoform X2"
                     /calculated_mol_wt=97919
     Region          <228..>343
                     /region_name="PRK07764"
                     /note="DNA polymerase III subunits gamma and tau;
                     Validated"
                     /db_xref="CDD:236090"
     Region          <382..>702
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..868
                     /gene="LOC128850784"
                     /coded_by="XM_054055780.1:245..2851"
                     /db_xref="GeneID:128850784"
ORIGIN      
        1 maaklkrdfg deapakptra sqlggraqst svqaskksfl kddfisklpa edtgaaegsg
       61 asdadtqavl qtlkdieeme ayllgiskps sgprktsvkg agkhdslega gkppthekep
      121 pqtplhtatp vqrrrrqelt leedgddlln alglgsglkg dgqqgkkage eelrparskl
      181 dellgrgsma kvleqsvmgn rkefqlgkky qkqpekeegc keedfvfgay qpsvastvkh
      241 rparrpsvrq tatstgalqq aaasqekvat adgsrqpipw lstpkpapah pseaankvps
      301 rdtsalvpta lilgeqetps sqvatprahl qavpqqqvrt leleqaqhrl lleslqqwhr
      361 edlelfesah rswvkvmeet crqreerlrq ekeqlmaqll sqsqdaeqaq aelvaqhqqc
      421 latleqqrtl eleqqrtlel eqlrelqrsl ngvieqfssd lhnllhkvea rhhstghcdq
      481 qlkvlqdwms qqqrdmeerl sqkaqeviar metrlgehtr lleqkrwrat aeqseveslq
      541 hllkeqgqim tqqlsierae leraksalle keksvmqkcs eerqklaaew aevrtqqqls
      601 kewmkhever tlqmhsqreg tilslakeqa dlkirsrelk akeeqlardr elldeawrel
      661 rlekekvnrs alriqqqeek iksmtnlssq kydegeralr eacrmeseqq srlqvtqqhq
      721 hlheantpsp ahlglgppcq gpeplptasl spfswgwgma yqrqqlqnlc ddlpsnsaml
      781 ltteqdlsap vrglstlsaa phsweavprl ppplrtlpqh smgrsretyi nlellkfqaq
      841 qdhlfleneq ffleslkkap yhtaphsg
//
LOCUS       XP_053911756             861 aa            linear   VRT 09-MAR-2023
DEFINITION  fas-binding factor 1 homolog isoform X3 [Cuculus canorus].
ACCESSION   XP_053911756
VERSION     XP_053911756.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055781.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..861
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..861
                     /product="fas-binding factor 1 homolog isoform X3"
                     /calculated_mol_wt=97032
     Region          <220..>335
                     /region_name="PRK07764"
                     /note="DNA polymerase III subunits gamma and tau;
                     Validated"
                     /db_xref="CDD:236090"
     Region          <374..>694
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..861
                     /gene="LOC128850784"
                     /coded_by="XM_054055781.1:245..2830"
                     /db_xref="GeneID:128850784"
ORIGIN      
        1 maaklkrdfg deapakptra sqlggraqst svqaskksfl kddfisklpa edtgaaegsg
       61 asdadtqavl qtlkdieeme ayllgiskps sgprktsvkg agkhdslega gkppthekep
      121 pqtplhtatp vqrrrrqelt leedgddlln alglgsglkg dgqqgkkage eelrparskl
      181 dellgrgsma kvleqsvmgn rkefqlekee gckeedfvfg ayqpsvastv khrparrpsv
      241 rqtatstgal qqaaasqekv atadgsrqpi pwlstpkpap ahpseaankv psrdtsalvp
      301 talilgeqet pssqvatpra hlqavpqqqv rtleleqaqh rllleslqqw hredlelfes
      361 ahrswvkvme etcrqreerl rqekeqlmaq llsqsqdaeq aqaelvaqhq qclatleqqr
      421 tleleqqrtl eleqlrelqr slngvieqfs sdlhnllhkv earhhstghc dqqlkvlqdw
      481 msqqqrdmee rlsqkaqevi armetrlgeh trlleqkrwr ataeqseves lqhllkeqgq
      541 imtqqlsier aeleraksal lekeksvmqk cseerqklaa ewaevrtqqq lskewmkhev
      601 ertlqmhsqr egtilslake qadlkirsre lkakeeqlar drelldeawr elrlekekvn
      661 rsalriqqqe ekiksmtnls sqkydegera lreacrmese qqsrlqvtqq hqhlheantp
      721 spahlglgpp cqgpeplpta slspfswgwg mayqrqqlqn lcddlpsnsa mlltteqdls
      781 apvrglstls aaaphsweav prlppplrtl pqhsmgrsre tyinlellkf qaqqdhlfle
      841 neqffleslk kapyhtaphs g
//
LOCUS       XP_053911757             854 aa            linear   VRT 09-MAR-2023
DEFINITION  fas-binding factor 1 homolog isoform X4 [Cuculus canorus].
ACCESSION   XP_053911757
VERSION     XP_053911757.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055782.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..854
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..854
                     /product="fas-binding factor 1 homolog isoform X4"
                     /calculated_mol_wt=96365
     Region          <367..>687
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..854
                     /gene="LOC128850784"
                     /coded_by="XM_054055782.1:245..2809"
                     /db_xref="GeneID:128850784"
ORIGIN      
        1 maaklkrdfg deapakptra sqlggraqst svqaskksfl kddfisklpa edtgaaegsg
       61 asdadtqavl qtlkdieeme ayllgiskps sgprktsvkg agkhdslega gkppthekep
      121 pqtplhtatp vqrrrrqelt leedgddlln alglgsglkg dgqqgkkage eelrparskl
      181 dellgrgsma kvleqsvmgn rkefqlgkky qkqpekeegc keedfvfgay qpsvastvkh
      241 rparrpsvrq tatstgalqq aaasqekvat adgsrqpipw lstpkpapah pseaankvps
      301 rdtsalvpta lilgeqetps sqvrtleleq aqhrlllesl qqwhredlel fesahrswvk
      361 vmeetcrqre erlrqekeql maqllsqsqd aeqaqaelva qhqqclatle qqrtleleqq
      421 rtleleqlre lqrslngvie qfssdlhnll hkvearhhst ghcdqqlkvl qdwmsqqqrd
      481 meerlsqkaq eviarmetrl gehtrlleqk rwrataeqse veslqhllke qgqimtqqls
      541 ieraelerak sallekeksv mqkcseerqk laaewaevrt qqqlskewmk hevertlqmh
      601 sqregtilsl akeqadlkir srelkakeeq lardrellde awrelrleke kvnrsalriq
      661 qqeekiksmt nlssqkydeg eralreacrm eseqqsrlqv tqqhqhlhea ntpspahlgl
      721 gppcqgpepl ptaslspfsw gwgmayqrqq lqnlcddlps nsamlltteq dlsapvrgls
      781 tlsaaaphsw eavprlpppl rtlpqhsmgr sretyinlel lkfqaqqdhl fleneqffle
      841 slkkapyhta phsg
//
LOCUS       XP_053911759             831 aa            linear   VRT 09-MAR-2023
DEFINITION  fas-binding factor 1 homolog isoform X5 [Cuculus canorus].
ACCESSION   XP_053911759
VERSION     XP_053911759.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055784.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..831
                     /product="fas-binding factor 1 homolog isoform X5"
                     /calculated_mol_wt=94087
     Region          <228..>343
                     /region_name="PRK07764"
                     /note="DNA polymerase III subunits gamma and tau;
                     Validated"
                     /db_xref="CDD:236090"
     Region          <388..>702
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..831
                     /gene="LOC128850784"
                     /coded_by="XM_054055784.1:245..2740"
                     /db_xref="GeneID:128850784"
ORIGIN      
        1 maaklkrdfg deapakptra sqlggraqst svqaskksfl kddfisklpa edtgaaegsg
       61 asdadtqavl qtlkdieeme ayllgiskps sgprktsvkg agkhdslega gkppthekep
      121 pqtplhtatp vqrrrrqelt leedgddlln alglgsglkg dgqqgkkage eelrparskl
      181 dellgrgsma kvleqsvmgn rkefqlgkky qkqpekeegc keedfvfgay qpsvastvkh
      241 rparrpsvrq tatstgalqq aaasqekvat adgsrqpipw lstpkpapah pseaankvps
      301 rdtsalvpta lilgeqetps sqvatprahl qavpqqqvrt leleqaqhrl lleslqqwhr
      361 edlelfesah rswvkvmeet crqreerlrq ekeqlmaqll sqsqdaeqaq aelvaqhqqc
      421 latleqqrtl eleqqrtlel eqlrelqrsl ngvieqfssd lhnllhkvea rhhstghcdq
      481 qlkvlqdwms qqqrdmeerl sqkaqeviar metrlgehtr lleqkrwrat aeqseveslq
      541 hllkeqgqim tqqlsierae leraksalle keksvmqkcs eerqklaaew aevrtqqqls
      601 kewmkhever tlqmhsqreg tilslakeqa dlkirsrelk akeeqlardr elldeawrel
      661 rlekekvnrs alriqqqeek iksmtnlssq kydegeralr eacrmeseqq srlqvtqqhq
      721 hlherqqlqn lcddlpsnsa mlltteqdls apvrglstls aaaphsweav prlppplrtl
      781 pqhsmgrsre tyinlellkf qaqqdhlfle neqffleslk kapyhtaphs g
//
LOCUS       XP_053911760             830 aa            linear   VRT 09-MAR-2023
DEFINITION  fas-binding factor 1 homolog isoform X6 [Cuculus canorus].
ACCESSION   XP_053911760
VERSION     XP_053911760.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055785.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..830
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..830
                     /product="fas-binding factor 1 homolog isoform X6"
                     /calculated_mol_wt=94016
     Region          <228..>343
                     /region_name="PRK07764"
                     /note="DNA polymerase III subunits gamma and tau;
                     Validated"
                     /db_xref="CDD:236090"
     Region          <382..>702
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..830
                     /gene="LOC128850784"
                     /coded_by="XM_054055785.1:245..2737"
                     /db_xref="GeneID:128850784"
ORIGIN      
        1 maaklkrdfg deapakptra sqlggraqst svqaskksfl kddfisklpa edtgaaegsg
       61 asdadtqavl qtlkdieeme ayllgiskps sgprktsvkg agkhdslega gkppthekep
      121 pqtplhtatp vqrrrrqelt leedgddlln alglgsglkg dgqqgkkage eelrparskl
      181 dellgrgsma kvleqsvmgn rkefqlgkky qkqpekeegc keedfvfgay qpsvastvkh
      241 rparrpsvrq tatstgalqq aaasqekvat adgsrqpipw lstpkpapah pseaankvps
      301 rdtsalvpta lilgeqetps sqvatprahl qavpqqqvrt leleqaqhrl lleslqqwhr
      361 edlelfesah rswvkvmeet crqreerlrq ekeqlmaqll sqsqdaeqaq aelvaqhqqc
      421 latleqqrtl eleqqrtlel eqlrelqrsl ngvieqfssd lhnllhkvea rhhstghcdq
      481 qlkvlqdwms qqqrdmeerl sqkaqeviar metrlgehtr lleqkrwrat aeqseveslq
      541 hllkeqgqim tqqlsierae leraksalle keksvmqkcs eerqklaaew aevrtqqqls
      601 kewmkhever tlqmhsqreg tilslakeqa dlkirsrelk akeeqlardr elldeawrel
      661 rlekekvnrs alriqqqeek iksmtnlssq kydegeralr eacrmeseqq srlqvtqqhq
      721 hlherqqlqn lcddlpsnsa mlltteqdls apvrglstls aaphsweavp rlppplrtlp
      781 qhsmgrsret yinlellkfq aqqdhlflen eqffleslkk apyhtaphsg
//
LOCUS       XP_053911761             791 aa            linear   VRT 09-MAR-2023
DEFINITION  fas-binding factor 1 homolog isoform X7 [Cuculus canorus].
ACCESSION   XP_053911761
VERSION     XP_053911761.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055786.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..791
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..791
                     /product="fas-binding factor 1 homolog isoform X7"
                     /calculated_mol_wt=89854
     Region          <150..>265
                     /region_name="PRK07764"
                     /note="DNA polymerase III subunits gamma and tau;
                     Validated"
                     /db_xref="CDD:236090"
     Region          <304..>624
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..791
                     /gene="LOC128850784"
                     /coded_by="XM_054055786.1:343..2718"
                     /db_xref="GeneID:128850784"
ORIGIN      
        1 meayllgisk pssgprktsv kgagkhdsle gagkppthek eppqtplhta tpvqrrrrqe
       61 ltleedgddl lnalglgsgl kgdgqqgkka geeelrpars kldellgrgs makvleqsvm
      121 gnrkefqlgk kyqkqpekee gckeedfvfg ayqpsvastv khrparrpsv rqtatstgal
      181 qqaaasqekv atadgsrqpi pwlstpkpap ahpseaankv psrdtsalvp talilgeqet
      241 pssqvatpra hlqavpqqqv rtleleqaqh rllleslqqw hredlelfes ahrswvkvme
      301 etcrqreerl rqekeqlmaq llsqsqdaeq aqaelvaqhq qclatleqqr tleleqqrtl
      361 eleqlrelqr slngvieqfs sdlhnllhkv earhhstghc dqqlkvlqdw msqqqrdmee
      421 rlsqkaqevi armetrlgeh trlleqkrwr ataeqseves lqhllkeqgq imtqqlsier
      481 aeleraksal lekeksvmqk cseerqklaa ewaevrtqqq lskewmkhev ertlqmhsqr
      541 egtilslake qadlkirsre lkakeeqlar drelldeawr elrlekekvn rsalriqqqe
      601 ekiksmtnls sqkydegera lreacrmese qqsrlqvtqq hqhlheantp spahlglgpp
      661 cqgpeplpta slspfswgwg mayqrqqlqn lcddlpsnsa mlltteqdls apvrglstls
      721 aaaphsweav prlppplrtl pqhsmgrsre tyinlellkf qaqqdhlfle neqffleslk
      781 kapyhtaphs g
//
LOCUS       XP_053911762             637 aa            linear   VRT 09-MAR-2023
DEFINITION  fas-binding factor 1 homolog isoform X8 [Cuculus canorus].
ACCESSION   XP_053911762
VERSION     XP_053911762.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055787.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..637
                     /product="fas-binding factor 1 homolog isoform X8"
                     /calculated_mol_wt=71361
     Region          <228..>343
                     /region_name="PRK07764"
                     /note="DNA polymerase III subunits gamma and tau;
                     Validated"
                     /db_xref="CDD:236090"
     Region          <335..>603
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..637
                     /gene="LOC128850784"
                     /coded_by="XM_054055787.1:245..2158"
                     /db_xref="GeneID:128850784"
ORIGIN      
        1 maaklkrdfg deapakptra sqlggraqst svqaskksfl kddfisklpa edtgaaegsg
       61 asdadtqavl qtlkdieeme ayllgiskps sgprktsvkg agkhdslega gkppthekep
      121 pqtplhtatp vqrrrrqelt leedgddlln alglgsglkg dgqqgkkage eelrparskl
      181 dellgrgsma kvleqsvmgn rkefqlgkky qkqpekeegc keedfvfgay qpsvastvkh
      241 rparrpsvrq tatstgalqq aaasqekvat adgsrqpipw lstpkpapah pseaankvps
      301 rdtsalvpta lilgeqetps sqvatprahl qavpqqqvrt leleqaqhrl lleslqqwhr
      361 edlelfesah rswvkvmeet crqreerlrq ekeqlmaqll sqsqdaeqaq aelvaqhqqc
      421 latleqqrtl eleqqrtlel eqlrelqrsl ngvieqfssd lhnllhkvea rhhstghcdq
      481 qlkvlqdwms qqqrdmeerl sqkaqeviar metrlgehtr lleqkrwrat aeqseveslq
      541 hllkeqgqim tqqlsierae leraksalle keksvmqkcs eerqklaaew aevrtqqqls
      601 kewmkhever tlqmhsqreg tilslakgrc lalpldv
//
LOCUS       XP_053911763             842 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850785 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911763
VERSION     XP_053911763.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055788.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..842
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..842
                     /product="uncharacterized protein LOC128850785 isoform X1"
                     /calculated_mol_wt=96680
     Region          211..413
                     /region_name="Gag_p30"
                     /note="Gag P30 core shell protein; pfam02093"
                     /db_xref="CDD:426597"
     Region          <439..>493
                     /region_name="ps-ssRNAv_RdRp-like"
                     /note="conserved catalytic core domain of RNA-dependent
                     RNA polymerase (RdRp) from the positive-sense
                     single-stranded RNA [(+)ssRNA] viruses and closely related
                     viruses; cl40470"
                     /db_xref="CDD:477363"
     Site            471
                     /site_type="other"
                     /note="nucleic acid binding site [nucleotide binding]"
                     /db_xref="CDD:238185"
     Region          <491..532
                     /region_name="RNase_H_like"
                     /note="Ribonuclease H-like superfamily, including RNase H,
                     HI, HII, HIII, and RNase-like domain IV of spliceosomal
                     protein Prp8; cl14782"
                     /db_xref="CDD:449355"
     Region          661..753
                     /region_name="rve"
                     /note="Integrase core domain; pfam00665"
                     /db_xref="CDD:459897"
     CDS             1..842
                     /gene="LOC128850785"
                     /coded_by="XM_054055788.1:1727..4255"
                     /db_xref="GeneID:128850785"
ORIGIN      
        1 mppipksspl gcilmhwkeg qfgqemqkrk lveycnvwwt qydlegqvlw pengtldysi
       61 ilqlmqfcrh egkwdeipyv elffilrgke ewkkacgimv vstksdeqck gcvtekkcmk
      121 clavenalqh kedddfdllv apsappaprd tgvkgdgede veieeqeyst tpvshrtrqr
      181 diqvrqqaps ailaplrqgv gaegpvyvkv pftpgdlmlw kqsagtyren pskvarvvkm
      241 ilktqnpdwd diqvlldtlm dstekemvlr tarervreds rqgivtgtvd qnfptedpmw
      301 dyntargmsn lrryqewivv evqnampkti nwsklynvrq ektespsvfl erlkevarky
      361 tdldaeteqa kvqlaliflg qsqdairkkl qkregaelrd ldglletawe vynnreress
      421 qrqqrhllav mqrrgqhnpa grdsrklfaf ewenphngrk mqltwtrlpq gfknsptlfg
      481 nqlakelesw tmqekfqlpk qvaimhckah qggdskiaeg naladrtarr iarqvsnmma
      541 liptkvsplq nyltqkpkys eedeklarll kaqlgsdgwy ltatgqvivp ttimrtvlqt
      601 ehqkchwgae alvaylkrsi istrmltmar sinskceicl rnnpvvrkgi emghirvgme
      661 pgdywqidfv elpksqgyry llvgvdtfsg wpeafpcrtn qetvkwllre iiprfgvplg
      721 lssdrgqhfv ativqevsrm lgiswnlhtp wipqssgqve kmnqtikrqi skicqeakiq
      781 wpqalpiall ririkprsgm tvspyeilfg kpyeapqpnl nvhikgnqdv ynyvlslsrt
      841 lt
//
LOCUS       XP_053911764             505 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850785 isoform X2 [Cuculus canorus].
ACCESSION   XP_053911764
VERSION     XP_053911764.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055789.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..505
                     /product="uncharacterized protein LOC128850785 isoform X2"
                     /calculated_mol_wt=58577
     Region          211..413
                     /region_name="Gag_p30"
                     /note="Gag P30 core shell protein; pfam02093"
                     /db_xref="CDD:426597"
     Region          <439..>493
                     /region_name="ps-ssRNAv_RdRp-like"
                     /note="conserved catalytic core domain of RNA-dependent
                     RNA polymerase (RdRp) from the positive-sense
                     single-stranded RNA [(+)ssRNA] viruses and closely related
                     viruses; cl40470"
                     /db_xref="CDD:477363"
     Site            471
                     /site_type="other"
                     /note="nucleic acid binding site [nucleotide binding]"
                     /db_xref="CDD:238185"
     CDS             1..505
                     /gene="LOC128850785"
                     /coded_by="XM_054055789.1:1727..3244"
                     /db_xref="GeneID:128850785"
ORIGIN      
        1 mppipksspl gcilmhwkeg qfgqemqkrk lveycnvwwt qydlegqvlw pengtldysi
       61 ilqlmqfcrh egkwdeipyv elffilrgke ewkkacgimv vstksdeqck gcvtekkcmk
      121 clavenalqh kedddfdllv apsappaprd tgvkgdgede veieeqeyst tpvshrtrqr
      181 diqvrqqaps ailaplrqgv gaegpvyvkv pftpgdlmlw kqsagtyren pskvarvvkm
      241 ilktqnpdwd diqvlldtlm dstekemvlr tarervreds rqgivtgtvd qnfptedpmw
      301 dyntargmsn lrryqewivv evqnampkti nwsklynvrq ektespsvfl erlkevarky
      361 tdldaeteqa kvqlaliflg qsqdairkkl qkregaelrd ldglletawe vynnreress
      421 qrqqrhllav mqrrgqhnpa grdsrklfaf ewenphngrk mqltwtrlpq gfknsptlfg
      481 nqlakelesw tmqekfqelq hseqk
//
LOCUS       XP_053911765             500 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850785 isoform X3 [Cuculus canorus].
ACCESSION   XP_053911765
VERSION     XP_053911765.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055790.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..500
                     /product="uncharacterized protein LOC128850785 isoform X3"
                     /calculated_mol_wt=57909
     Region          211..413
                     /region_name="Gag_p30"
                     /note="Gag P30 core shell protein; pfam02093"
                     /db_xref="CDD:426597"
     Region          <439..>493
                     /region_name="ps-ssRNAv_RdRp-like"
                     /note="conserved catalytic core domain of RNA-dependent
                     RNA polymerase (RdRp) from the positive-sense
                     single-stranded RNA [(+)ssRNA] viruses and closely related
                     viruses; cl40470"
                     /db_xref="CDD:477363"
     Site            471
                     /site_type="other"
                     /note="nucleic acid binding site [nucleotide binding]"
                     /db_xref="CDD:238185"
     CDS             1..500
                     /gene="LOC128850785"
                     /coded_by="XM_054055790.1:1727..3229"
                     /db_xref="GeneID:128850785"
ORIGIN      
        1 mppipksspl gcilmhwkeg qfgqemqkrk lveycnvwwt qydlegqvlw pengtldysi
       61 ilqlmqfcrh egkwdeipyv elffilrgke ewkkacgimv vstksdeqck gcvtekkcmk
      121 clavenalqh kedddfdllv apsappaprd tgvkgdgede veieeqeyst tpvshrtrqr
      181 diqvrqqaps ailaplrqgv gaegpvyvkv pftpgdlmlw kqsagtyren pskvarvvkm
      241 ilktqnpdwd diqvlldtlm dstekemvlr tarervreds rqgivtgtvd qnfptedpmw
      301 dyntargmsn lrryqewivv evqnampkti nwsklynvrq ektespsvfl erlkevarky
      361 tdldaeteqa kvqlaliflg qsqdairkkl qkregaelrd ldglletawe vynnreress
      421 qrqqrhllav mqrrgqhnpa grdsrklfaf ewenphngrk mqltwtrlpq gfknsptlfg
      481 nqlakelesw tmqekfqqps
//
LOCUS       XP_053911766             445 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850785 isoform X4 [Cuculus canorus].
ACCESSION   XP_053911766
VERSION     XP_053911766.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055791.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..445
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..445
                     /product="uncharacterized protein LOC128850785 isoform X4"
                     /calculated_mol_wt=51328
     Region          211..413
                     /region_name="Gag_p30"
                     /note="Gag P30 core shell protein; pfam02093"
                     /db_xref="CDD:426597"
     CDS             1..445
                     /gene="LOC128850785"
                     /coded_by="XM_054055791.1:1727..3064"
                     /db_xref="GeneID:128850785"
ORIGIN      
        1 mppipksspl gcilmhwkeg qfgqemqkrk lveycnvwwt qydlegqvlw pengtldysi
       61 ilqlmqfcrh egkwdeipyv elffilrgke ewkkacgimv vstksdeqck gcvtekkcmk
      121 clavenalqh kedddfdllv apsappaprd tgvkgdgede veieeqeyst tpvshrtrqr
      181 diqvrqqaps ailaplrqgv gaegpvyvkv pftpgdlmlw kqsagtyren pskvarvvkm
      241 ilktqnpdwd diqvlldtlm dstekemvlr tarervreds rqgivtgtvd qnfptedpmw
      301 dyntargmsn lrryqewivv evqnampkti nwsklynvrq ektespsvfl erlkevarky
      361 tdldaeteqa kvqlaliflg qsqdairkkl qkregaelrd ldglletawe vynnreress
      421 qrqqrhllav mqrrgqhnpa grvel
//
LOCUS       XP_053911767             444 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850785 isoform X5 [Cuculus canorus].
ACCESSION   XP_053911767
VERSION     XP_053911767.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055792.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..444
                     /product="uncharacterized protein LOC128850785 isoform X5"
                     /calculated_mol_wt=51229
     Region          211..413
                     /region_name="Gag_p30"
                     /note="Gag P30 core shell protein; pfam02093"
                     /db_xref="CDD:426597"
     CDS             1..444
                     /gene="LOC128850785"
                     /coded_by="XM_054055792.1:1727..3061"
                     /db_xref="GeneID:128850785"
ORIGIN      
        1 mppipksspl gcilmhwkeg qfgqemqkrk lveycnvwwt qydlegqvlw pengtldysi
       61 ilqlmqfcrh egkwdeipyv elffilrgke ewkkacgimv vstksdeqck gcvtekkcmk
      121 clavenalqh kedddfdllv apsappaprd tgvkgdgede veieeqeyst tpvshrtrqr
      181 diqvrqqaps ailaplrqgv gaegpvyvkv pftpgdlmlw kqsagtyren pskvarvvkm
      241 ilktqnpdwd diqvlldtlm dstekemvlr tarervreds rqgivtgtvd qnfptedpmw
      301 dyntargmsn lrryqewivv evqnampkti nwsklynvrq ektespsvfl erlkevarky
      361 tdldaeteqa kvqlaliflg qsqdairkkl qkregaelrd ldglletawe vynnreress
      421 qrqqrhllav mqrrgqhnpa grel
//
LOCUS       XP_053911768             417 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850785 isoform X6 [Cuculus canorus].
ACCESSION   XP_053911768
VERSION     XP_053911768.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055793.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..417
                     /product="uncharacterized protein LOC128850785 isoform X6"
                     /calculated_mol_wt=47922
     Region          102..176
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     CDS             1..417
                     /gene="LOC128850785"
                     /coded_by="XM_054055793.1:1808..3061"
                     /db_xref="GeneID:128850785"
ORIGIN      
        1 msnfvystli viwsltplmv itfvevpqkk emmksvtgqn atlfckfrnt vprnlesnry
       61 gwglkgkqks rgkvsnkfcl cnplqdhgik aghsyyqipl dsdiliycll ddplprefgw
      121 trkgkkipnd nrhltelrlg gmlvqtirri desdmgayrc qyqnetasgy seinitrirv
      181 kraiestqlp qvmniprgdp eenliiglik dfakmqntsr itaclplpkt agepikwgim
      241 tfpfpknvgn ntvckqemrv lqvkqkqyik qqwklpgrre dcykllnhqf vqsnsmfsfg
      301 dvgwctydvv keiiapqerk ewvcrekdev ntkwdsvwst silqkfqygg dtpwcfrwtg
      361 kqsvtndlal latnkvsrdi iesvswwncs ktfdcdtdpk qitippvria litgcsc
//
LOCUS       XP_053911769             417 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850785 isoform X6 [Cuculus canorus].
ACCESSION   XP_053911769
VERSION     XP_053911769.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055794.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..417
                     /product="uncharacterized protein LOC128850785 isoform X6"
                     /calculated_mol_wt=47922
     Region          102..176
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     CDS             1..417
                     /gene="LOC128850785"
                     /coded_by="XM_054055794.1:1571..2824"
                     /db_xref="GeneID:128850785"
ORIGIN      
        1 msnfvystli viwsltplmv itfvevpqkk emmksvtgqn atlfckfrnt vprnlesnry
       61 gwglkgkqks rgkvsnkfcl cnplqdhgik aghsyyqipl dsdiliycll ddplprefgw
      121 trkgkkipnd nrhltelrlg gmlvqtirri desdmgayrc qyqnetasgy seinitrirv
      181 kraiestqlp qvmniprgdp eenliiglik dfakmqntsr itaclplpkt agepikwgim
      241 tfpfpknvgn ntvckqemrv lqvkqkqyik qqwklpgrre dcykllnhqf vqsnsmfsfg
      301 dvgwctydvv keiiapqerk ewvcrekdev ntkwdsvwst silqkfqygg dtpwcfrwtg
      361 kqsvtndlal latnkvsrdi iesvswwncs ktfdcdtdpk qitippvria litgcsc
//
LOCUS       XP_053911770             417 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850785 isoform X6 [Cuculus canorus].
ACCESSION   XP_053911770
VERSION     XP_053911770.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055795.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..417
                     /product="uncharacterized protein LOC128850785 isoform X6"
                     /calculated_mol_wt=47922
     Region          102..176
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     CDS             1..417
                     /gene="LOC128850785"
                     /coded_by="XM_054055795.1:1574..2827"
                     /db_xref="GeneID:128850785"
ORIGIN      
        1 msnfvystli viwsltplmv itfvevpqkk emmksvtgqn atlfckfrnt vprnlesnry
       61 gwglkgkqks rgkvsnkfcl cnplqdhgik aghsyyqipl dsdiliycll ddplprefgw
      121 trkgkkipnd nrhltelrlg gmlvqtirri desdmgayrc qyqnetasgy seinitrirv
      181 kraiestqlp qvmniprgdp eenliiglik dfakmqntsr itaclplpkt agepikwgim
      241 tfpfpknvgn ntvckqemrv lqvkqkqyik qqwklpgrre dcykllnhqf vqsnsmfsfg
      301 dvgwctydvv keiiapqerk ewvcrekdev ntkwdsvwst silqkfqygg dtpwcfrwtg
      361 kqsvtndlal latnkvsrdi iesvswwncs ktfdcdtdpk qitippvria litgcsc
//
LOCUS       XP_053911771             417 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850785 isoform X6 [Cuculus canorus].
ACCESSION   XP_053911771
VERSION     XP_053911771.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055796.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..417
                     /product="uncharacterized protein LOC128850785 isoform X6"
                     /calculated_mol_wt=47922
     Region          102..176
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     CDS             1..417
                     /gene="LOC128850785"
                     /coded_by="XM_054055796.1:427..1680"
                     /db_xref="GeneID:128850785"
ORIGIN      
        1 msnfvystli viwsltplmv itfvevpqkk emmksvtgqn atlfckfrnt vprnlesnry
       61 gwglkgkqks rgkvsnkfcl cnplqdhgik aghsyyqipl dsdiliycll ddplprefgw
      121 trkgkkipnd nrhltelrlg gmlvqtirri desdmgayrc qyqnetasgy seinitrirv
      181 kraiestqlp qvmniprgdp eenliiglik dfakmqntsr itaclplpkt agepikwgim
      241 tfpfpknvgn ntvckqemrv lqvkqkqyik qqwklpgrre dcykllnhqf vqsnsmfsfg
      301 dvgwctydvv keiiapqerk ewvcrekdev ntkwdsvwst silqkfqygg dtpwcfrwtg
      361 kqsvtndlal latnkvsrdi iesvswwncs ktfdcdtdpk qitippvria litgcsc
//
LOCUS       XP_053911772             375 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: OTU domain-containing protein 3-like [Cuculus
            canorus].
ACCESSION   XP_053911772
VERSION     XP_053911772.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055797.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..375
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..375
                     /product="LOW QUALITY PROTEIN: OTU domain-containing
                     protein 3-like"
                     /calculated_mol_wt=42238
     Region          38..175
                     /region_name="OTU_OTUD3"
                     /note="OTU (ovarian tumor) domain of OTU domain-containing
                     protein 3 and similar proteins; cd22770"
                     /db_xref="CDD:438607"
     Site            order(55,102,105,112..115,139,141,156,160..162)
                     /site_type="other"
                     /note="putative polypeptide substrate binding site
                     [polypeptide binding]"
                     /db_xref="CDD:438607"
     CDS             1..375
                     /gene="LOC128850786"
                     /coded_by="XM_054055797.1:16..1143"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon"
                     /db_xref="GeneID:128850786"
ORIGIN      
        1 msrkqgggpr aasaagrhrr pqavdglgpg xggglavqlr alglklrevp gdgnclfral
       61 gdqleghsrn hlrhrqetvd ymikwredfe pfveddvpfd khvtnlakpg tfagndaiva
      121 farnnqlnvv ihqpnaplwq irgtdknnvr elhiayryre hydsvrrind dseapaylqm
      181 emlckndsnk reeaklwkge feadeieget edavqkvlka tgcsdtdlvr rildvedynv
      241 esaifaviqm neverisaee qhdpqsevqe scsrtlseen rygsrisgnq slhqgeignn
      301 tgqarnndkn qagrnpkvsk kqkkeqqrle kkkrqeerhr qkvlaskndr adssrretds
      361 sshvtlvktm ealni
//
LOCUS       XP_053911773             329 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase RNF186 [Cuculus canorus].
ACCESSION   XP_053911773
VERSION     XP_053911773.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055798.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..329
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..329
                     /product="E3 ubiquitin-protein ligase RNF186"
                     /calculated_mol_wt=35925
     Region          148..198
                     /region_name="RING_Ubox"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; cl17238"
                     /db_xref="CDD:473075"
     Site            order(151,154,169,171,174,177,193,196)
                     /site_type="other"
                     /note="cross-brace motif"
                     /db_xref="CDD:438111"
     CDS             1..329
                     /gene="LOC104066512"
                     /coded_by="XM_054055798.1:854..1843"
                     /db_xref="GeneID:104066512"
ORIGIN      
        1 mhtvgikqhi kgarssasps atgrqtaprf ismekstdkg nrsaaprvpq aekdspapaa
       61 egaagmsrag alpenaadmk rpgfteecvk ekerslgter gspdafkpav lerdcpdlkp
      121 lvmlmnktsp eaggfemnhq cssttpidmd clicfnkyni yrvpkllncq hafcavclkl
      181 ilrkeesawi itcplcrkat svsgglirtl qnkedimehl enpssnpevh isaigldnwt
      241 qssqdilyrd enapadnrla vqrlalllll vviltiiilp ftylglvkwv iclmlalgla
      301 lsvvlcctpk fywrgnsdsh kethiaaia
//
LOCUS       XP_053911774             329 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase RNF186 [Cuculus canorus].
ACCESSION   XP_053911774
VERSION     XP_053911774.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055799.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..329
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..329
                     /product="E3 ubiquitin-protein ligase RNF186"
                     /calculated_mol_wt=35925
     Region          148..198
                     /region_name="RING_Ubox"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; cl17238"
                     /db_xref="CDD:473075"
     Site            order(151,154,169,171,174,177,193,196)
                     /site_type="other"
                     /note="cross-brace motif"
                     /db_xref="CDD:438111"
     CDS             1..329
                     /gene="LOC104066512"
                     /coded_by="XM_054055799.1:745..1734"
                     /db_xref="GeneID:104066512"
ORIGIN      
        1 mhtvgikqhi kgarssasps atgrqtaprf ismekstdkg nrsaaprvpq aekdspapaa
       61 egaagmsrag alpenaadmk rpgfteecvk ekerslgter gspdafkpav lerdcpdlkp
      121 lvmlmnktsp eaggfemnhq cssttpidmd clicfnkyni yrvpkllncq hafcavclkl
      181 ilrkeesawi itcplcrkat svsgglirtl qnkedimehl enpssnpevh isaigldnwt
      241 qssqdilyrd enapadnrla vqrlalllll vviltiiilp ftylglvkwv iclmlalgla
      301 lsvvlcctpk fywrgnsdsh kethiaaia
//
LOCUS       XP_053911775             329 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase RNF186 [Cuculus canorus].
ACCESSION   XP_053911775
VERSION     XP_053911775.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055800.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..329
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..329
                     /product="E3 ubiquitin-protein ligase RNF186"
                     /calculated_mol_wt=35925
     Region          148..198
                     /region_name="RING_Ubox"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; cl17238"
                     /db_xref="CDD:473075"
     Site            order(151,154,169,171,174,177,193,196)
                     /site_type="other"
                     /note="cross-brace motif"
                     /db_xref="CDD:438111"
     CDS             1..329
                     /gene="LOC104066512"
                     /coded_by="XM_054055800.1:412..1401"
                     /db_xref="GeneID:104066512"
ORIGIN      
        1 mhtvgikqhi kgarssasps atgrqtaprf ismekstdkg nrsaaprvpq aekdspapaa
       61 egaagmsrag alpenaadmk rpgfteecvk ekerslgter gspdafkpav lerdcpdlkp
      121 lvmlmnktsp eaggfemnhq cssttpidmd clicfnkyni yrvpkllncq hafcavclkl
      181 ilrkeesawi itcplcrkat svsgglirtl qnkedimehl enpssnpevh isaigldnwt
      241 qssqdilyrd enapadnrla vqrlalllll vviltiiilp ftylglvkwv iclmlalgla
      301 lsvvlcctpk fywrgnsdsh kethiaaia
//
LOCUS       XP_053911776             329 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase RNF186 [Cuculus canorus].
ACCESSION   XP_053911776
VERSION     XP_053911776.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055801.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527849) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..329
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..329
                     /product="E3 ubiquitin-protein ligase RNF186"
                     /calculated_mol_wt=35925
     Region          148..198
                     /region_name="RING_Ubox"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; cl17238"
                     /db_xref="CDD:473075"
     Site            order(151,154,169,171,174,177,193,196)
                     /site_type="other"
                     /note="cross-brace motif"
                     /db_xref="CDD:438111"
     CDS             1..329
                     /gene="LOC104066512"
                     /coded_by="XM_054055801.1:282..1271"
                     /db_xref="GeneID:104066512"
ORIGIN      
        1 mhtvgikqhi kgarssasps atgrqtaprf ismekstdkg nrsaaprvpq aekdspapaa
       61 egaagmsrag alpenaadmk rpgfteecvk ekerslgter gspdafkpav lerdcpdlkp
      121 lvmlmnktsp eaggfemnhq cssttpidmd clicfnkyni yrvpkllncq hafcavclkl
      181 ilrkeesawi itcplcrkat svsgglirtl qnkedimehl enpssnpevh isaigldnwt
      241 qssqdilyrd enapadnrla vqrlalllll vviltiiilp ftylglvkwv iclmlalgla
      301 lsvvlcctpk fywrgnsdsh kethiaaia
//
LOCUS       XP_053911777             322 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14J1-like [Cuculus canorus].
ACCESSION   XP_053911777
VERSION     XP_053911777.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055802.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527850) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 3% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..322
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..322
                     /product="olfactory receptor 14J1-like"
                     /calculated_mol_wt=35507
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..322
                     /gene="LOC128850787"
                     /coded_by="XM_054055802.1:52..1020"
                     /db_xref="GeneID:128850787"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 llnlalldlg sisttvpksm anslwntrai ayigcafqvf lflffissey slltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flnallhman tfslplcqgn aveqffceip
      181 hilklscshs ylreagysif avclsfgcfv fivvsyvqif ravlripseq grqktfstcl
      241 phlavvslfi stagfaylkp hsisspsldl vvsvlysvvp palnpliysl rnqqlkdavw
      301 klisgwvsea incsscsayp fs
//
LOCUS       XP_053911778             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14J1-like [Cuculus canorus].
ACCESSION   XP_053911778
VERSION     XP_053911778.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055803.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527850) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14J1-like"
                     /calculated_mol_wt=34930
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850789"
                     /coded_by="XM_054055803.1:1..957"
                     /db_xref="GeneID:128850789"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn slimtiiand hhlhspmyff
       61 llnlalldlg svsttvpksm anslwntrai symgcvaqvf fvlllfgaey slltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgaa flnallhtan tfslplcqgn aveqffceip
      181 hilklscshs ylreagysmf avclsfgcfv fivvsfvqif ravlripseq grhkafstcl
      241 phlavvslfi stavfaylkp psisspsldl vvsvlysvvp palnpliysl rneelkdavw
      301 klisgwvsea incsscta
//
LOCUS       XP_053911780             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911780
VERSION     XP_053911780.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055805.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527850) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 4% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=34848
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850790"
                     /coded_by="XM_054055805.1:4..960"
                     /db_xref="GeneID:128850790"
ORIGIN      
        1 msnsssttqf lllafadtqe lqllhfwlfl giylagllgn gliittitcd rhlhtpmyff
       61 llnlsvfdlg sfstivpksm anslsntrti sytgcasqlf lflffiaaey slltimsydr
      121 yvaickplhy gtllgrracv hmaaaawgaa fltallhtan tfslplcqgn avdqffceip
      181 qilklscshs yirevgllgv safvafgcfv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvslfv sngifaylkp psisspsldl vvsvlysvvp palnpliysl rnqqlkdavw
      301 klisgcvsea inylscsa
//
LOCUS       XP_053911781             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911781
VERSION     XP_053911781.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055806.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527850) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=34825
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850791"
                     /coded_by="XM_054055806.1:1..957"
                     /db_xref="GeneID:128850791"
ORIGIN      
        1 msnsssitqf lllaftdtre lqllhfwlfl giylagllgn gliittiacd qhlhtpmyff
       61 lfslslldlg sisttvpkym anslwntrai symgcvaqvf fvlflfsaey slltvmsydr
      121 yvaickplhy gtllgsracv hmaaaawgaa flnallhtan tfslplcqgn avdqffceip
      181 qvlklscsqs ylrevgllgi sallsfgcfv sivvsylqif ravlricseq gwhkafstcl
      241 phlavvslfi sagvfaylkp ssvaspsldl vvsvlysvlp palnpliysl rnqqlkdavw
      301 klisgwvsea incsscta
//
LOCUS       XP_053911782             517 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 36-like [Cuculus canorus].
ACCESSION   XP_053911782
VERSION     XP_053911782.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055807.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527851) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 27% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..517
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..517
                     /product="ubiquitin carboxyl-terminal hydrolase 36-like"
                     /calculated_mol_wt=57692
     Region          216..516
                     /region_name="Peptidase_C19E"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02661"
                     /db_xref="CDD:239126"
     Site            order(221,226,477,494)
                     /site_type="active"
                     /db_xref="CDD:239126"
     CDS             1..517
                     /gene="LOC128850793"
                     /coded_by="XM_054055807.1:1..1554"
                     /db_xref="GeneID:128850793"
ORIGIN      
        1 mpppvnprsa lypsrkaerg dtgrvrcrra pvrsgdtcae rrrrgsvsva gqdgtagtap
       61 rrqgrggagr ealgdrggdr mgrpggageg ersgplpwpr daarrsgtlw rpprpldrpl
      121 rspqppgsai aieeqrkdgk dgrklhqeva tpfqaplqqk ktemeptkhs aseqlnrlqg
      181 sehvpgmqsd gipapkkvlf pverlslkwq rthpigaglq nlgntcflns tvqcltytpp
      241 lanyllsreh srtcqrgefc mlctmekhvl qvfsssgsai qptafvrnik kiathirlgr
      301 qedaheflsf tinamqracl dgctqldqqs qtttlvhqif ggflrsrvmc rvcnwpsdty
      361 epfldlavei eeaesieqal klfvrpemlc eenaymcnkc qtkvqaikrf sihrassvli
      421 vslkrfsifs gdkikkdvty pevldirpyl seakgdpmny elyavlvhsg yschsghyyc
      481 yvkasdgqwy qmndatvglt tikvvlnqqa yvlfylr
//
LOCUS       XP_053911784             516 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 36-like [Cuculus canorus].
ACCESSION   XP_053911784
VERSION     XP_053911784.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055809.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527851) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 26% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..516
                     /product="ubiquitin carboxyl-terminal hydrolase 36-like"
                     /calculated_mol_wt=57566
     Region          2..>131
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     Region          57..>208
                     /region_name="dnaA"
                     /note="chromosomal replication initiator protein DnaA;
                     cl42516"
                     /db_xref="CDD:455861"
     Region          215..515
                     /region_name="Peptidase_C19E"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02661"
                     /db_xref="CDD:239126"
     Site            order(220,225,476,493)
                     /site_type="active"
                     /db_xref="CDD:239126"
     CDS             1..516
                     /gene="LOC104057635"
                     /coded_by="XM_054055809.1:1..1551"
                     /db_xref="GeneID:104057635"
ORIGIN      
        1 mpppvnprsa lypsrkaerg dtgrvrcrra pvrsgdtcae rrrrgsvsva gqdgtagtap
       61 qrqgrggagr ealgdrggdr mgrpggageg ersgplpwpr daarrsgtlw rpprpldrpl
      121 rspqppgsai aieeqrkdgk dgrklhqeva tpfqaplqqk memeptkhsa seqlnrlqgs
      181 ehvpgmqsdg ipapkkvlfp verlslkwqr thpigaglqn lgntcflnst vqcltytppl
      241 anyllsrehs rtcqrgefcm lctmekhvlq vfsssgsaiq ptafvrnikk iathirlgrq
      301 edaheflsft inamqracld gctqldqqsq tttlvhqifg gflrsrvmcr vcnwpsdtye
      361 pfldlaveie eaesieqalk lfvrpemlce enaymcnkcq tkvqaikrfs ihrassvliv
      421 slkrfsifsg dkikkdvtyp evldirpyls eakgdpmnye lyavlvhsgy schsghyycy
      481 vkasdgqwyq mndatvgltt ikvvlnqqay vlfylr
//
LOCUS       XP_053911785             115 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase RNF4-like [Cuculus canorus].
ACCESSION   XP_053911785
VERSION     XP_053911785.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055810.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527851) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..115
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..115
                     /product="E3 ubiquitin-protein ligase RNF4-like"
                     /calculated_mol_wt=12957
     Region          34..90
                     /region_name="RING_Ubox"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; cl17238"
                     /db_xref="CDD:473075"
     Site            order(39,42,61,63,66,69,80,83)
                     /site_type="other"
                     /note="cross-brace motif"
                     /db_xref="CDD:438111"
     CDS             1..115
                     /gene="LOC128850795"
                     /coded_by="XM_054055810.1:173..520"
                     /db_xref="GeneID:128850795"
ORIGIN      
        1 mmrmnqeind vymtdkvsqe lgpvedetts skpsgpitcp icmdvhleim qsgrlfvstk
       61 rghvfciqyl lhslknansc ptcrkklthk qyhpiyitdg saaeedliav qwqnd
//
LOCUS       XP_053911786             365 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase RBBP6-like [Cuculus canorus].
ACCESSION   XP_053911786
VERSION     XP_053911786.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055811.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527852) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 22% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..365
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..365
                     /product="E3 ubiquitin-protein ligase RBBP6-like"
                     /calculated_mol_wt=39506
     Region          4..>272
                     /region_name="COG5222"
                     /note="Uncharacterized conserved protein, contains RING
                     Zn-finger [General function prediction only]"
                     /db_xref="CDD:227547"
     Region          4..76
                     /region_name="DWNN"
                     /note="DWNN domain; pfam08783"
                     /db_xref="CDD:462603"
     CDS             1..365
                     /gene="LOC128850796"
                     /coded_by="XM_054055811.1:275..1372"
                     /db_xref="GeneID:128850796"
ORIGIN      
        1 mpcihykffs rlnydtvsfs gldislgdlk hqimsreklk asrcelqisn aqtgeeytde
       61 ntlvprnssv ivrripaagv kvarkrcvpr gteavrgtpk avddssapmt laqliksadl
      121 agadvpeadk ikammiqssq dydpinyvkt plspytwlrd gkpghyvrng pdnggrhfgs
      181 vpritkctgi pksflkeved pntkgamlan tgkyvipiln aevyarekkk kppllaveps
      241 ssssdpvpee qlpltpppaa fmavsppaap gcpvqnqpvl pgpqgqsmpt aahpkrggkr
      301 psaggragwe lrslcnaqqk lkkpyryvet nsclksfrgf qkdqgtmvdr aessdhqsqg
      361 ggwga
//
LOCUS       XP_053911787             908 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 36-like [Cuculus canorus].
ACCESSION   XP_053911787
VERSION     XP_053911787.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055812.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527852) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 47% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..908
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..908
                     /product="ubiquitin carboxyl-terminal hydrolase 36-like"
                     /calculated_mol_wt=99027
     Region          233..533
                     /region_name="Peptidase_C19E"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02661"
                     /db_xref="CDD:239126"
     Site            order(238,243,494,511)
                     /site_type="active"
                     /db_xref="CDD:239126"
     CDS             1..908
                     /gene="LOC128850797"
                     /coded_by="XM_054055812.1:1..2727"
                     /db_xref="GeneID:128850797"
ORIGIN      
        1 mpppvsprsa pvppreaerg dtgrvrwrrs avrsgdtcae rrrrgsvsva grsgtaprrq
       61 grggagreal gdrggdrmgr pggagegers gplpwprdaa prsgtlwrpp rpldrplrsp
      121 qppgsaiaie ehlefgkdgr elhqelatpf qapqqkkmev eptehstseq pnrlqgkdel
      181 lspckeaads pepaqqrseh vpgmqgdgip lpkkvlfpve rlsmqwqrth qigaglknlg
      241 ntcflnstvq cltytpplan yllsrehsrt cqqgefcmlc tmekhilqvf sssgsaiqpt
      301 afvrnikkia thirlgrqed aheflsftin amqracldgc teldqqsqtt tlvhqifggf
      361 lrsrvmckac nwpsdtyepf ldlaveieea esieqalklf vrpemlceen aymcdkcktk
      421 vqaikrfsih rassvlivsl krfsifsggk ikkevtypev ldirpylsed kgdpmnyely
      481 avlvhsgysc rsghyycyvk asdgqwyqmn davvcltnlk vvlnqqayvl fyvrtpgtsk
      541 sfeepiaeav siapsqpvmg qkpetqpank lsgqeevgvs vpcrtcstgp klptaskllq
      601 elrkylsavp gvkppapegs rraklkrsll avsaveqsss tsppaakkla lsaekgstpe
      661 avsrddrctq lqlqlpeqmh ptdtthpdst sqpsgklsts ssalkvpnae kpplkiiikl
      721 salgdlssvl kkrhhradgs pqsqsvnged dtsspprkks rtpgnsvsit geeagksasg
      781 gqkepgcqdt sssalkvpna ekpplkiiik lsvledlssl lkkrhhradg sppaqsvnge
      841 ddtsspprkk sctpgnsvsi tgeeeagksp sggqkepgcq elgaelkkke gkkkkrrrme
      901 skecfsgr
//
LOCUS       XP_053911788             873 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 36-like [Cuculus canorus].
ACCESSION   XP_053911788
VERSION     XP_053911788.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055813.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527852) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 45% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..873
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..873
                     /product="ubiquitin carboxyl-terminal hydrolase 36-like"
                     /calculated_mol_wt=95467
     Region          236..536
                     /region_name="Peptidase_C19E"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02661"
                     /db_xref="CDD:239126"
     Site            order(241,246,497,514)
                     /site_type="active"
                     /db_xref="CDD:239126"
     CDS             1..873
                     /gene="LOC128850798"
                     /coded_by="XM_054055813.1:1..2622"
                     /db_xref="GeneID:128850798"
ORIGIN      
        1 mpppvsprsa pvppreaerg dtgrvrwrrs pvrsgdtcae rrrrgsvsva grsgtagtap
       61 rrqgrggagr ealgdrggdr mgrpggageg ersgplpwpr daaprsgtlw rpprpldrpl
      121 rspqppgsai aieehlefgk dgrelhqela tpfqapqqkk mevepiehst seqlnrlqgk
      181 dellspckea adspepaqqr sehvpgmqgd giplpkkvlf pverlsmqwq rthqigaglk
      241 nlgntcflns tvqcltytpp lanyllsreh srtcqqgefc mlctmekhil qvfsssgsai
      301 qptsfvrnik kiathirlgr qedaheflsf tinamqracl dgcteldqqs qtttlvhqif
      361 ggflrsrvmc kacnwpsdty epfldlavei eeaesieqal klfvrpemlc eenaymcdkc
      421 ktkvqaikrf sihrassvli vslkrfsifs ggkikkevty pevldirpyl sedkgdpmny
      481 elyavlvhsg yscrsghyyc yvkasdgqwy qmndavvclt nlkvvlnqqa yvlfyvrtpg
      541 tsksfeepia eavsiapsqp vmgqkpemqp anklsgqeev gvsvpcrtcs tgpklptask
      601 llqelrkyls avpgvkppap edsrraklkr sllavsaveq ssstsppaak klalsaekgs
      661 tpeavsrddr ctqlqlqlpe qmhptdtthp dstsqpsgkl stsssalklp naekpplkii
      721 iklsalgdls splkkrhhra dgspqsqsin geddtssppr kksrtpgnsv sitgeeaalg
      781 dlssllkkrh hradgsppaq svngeddtss pprkksctpg nsvsitgeee agksasggqk
      841 epgcqelgae lkkkegkkkk rrrmeskecf sgr
//
LOCUS       XP_053911790             444 aa            linear   VRT 09-MAR-2023
DEFINITION  homeodomain-interacting protein kinase 4-like [Cuculus canorus].
ACCESSION   XP_053911790
VERSION     XP_053911790.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055815.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527852) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..444
                     /product="homeodomain-interacting protein kinase 4-like"
                     /calculated_mol_wt=50288
     Region          5..324
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(5..8,11,13,26,28,61,77..80,123,127..128,130,
                     144..145)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270870"
     CDS             1..444
                     /gene="LOC128850799"
                     /coded_by="XM_054055815.1:1..1335"
                     /db_xref="GeneID:128850799"
ORIGIN      
        1 mvatvgkgtf gevtwgwrrs tgemvaikil knkghhglta knelrlleal revdteeshi
       61 vhflqsfsdg vctylvlell dqnlfefqkq nflllpvrhi rtitaqvlaa lvklkelsii
      121 hadlkpenim lvdhkrypfr iklidfgsar iftdihqikd pyiqtrfyra peillglpfw
      181 gkmdmwslgc vmaelhlgrp lfpgineydq vvhicstlgl pqdqllhaak ktlslfqwvp
      241 yptgswqlrp pgkdmgkpkg wkkyvlssln qlaevnvhpv atssqevqae ccdlhgmvel
      301 lkrvltwdsr kritpnaalk hpfislqqvk asfeatryyq lcqedlratk kdtgavevfh
      361 gkelpslnqt dgfnhakgdk nqdvhqapip tfyshqhhqw armepaagnw ilvrstngqk
      421 tghhggtmgf sgieeknqcg qpdt
//
LOCUS       XP_053911791             177 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RNF4-like [Cuculus
            canorus].
ACCESSION   XP_053911791
VERSION     XP_053911791.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055816.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527852) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 31% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..177
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..177
                     /product="LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase
                     RNF4-like"
                     /calculated_mol_wt=20270
     Region          114..170
                     /region_name="RING_Ubox"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; cl17238"
                     /db_xref="CDD:473075"
     Site            order(119,122,141,143,146,149,160,163)
                     /site_type="other"
                     /note="cross-brace motif"
                     /db_xref="CDD:438111"
     CDS             1..177
                     /gene="LOC128850800"
                     /coded_by="XM_054055816.1:1..534"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /db_xref="GeneID:128850800"
ORIGIN      
        1 mgeigevtgg tqahwgrhwa qaagtpwppr inncpprinn cpprinrffg diqqqdenqr
       61 qrrslrlrsq rrldscvlsn ddedetrdnd vymtdkvsqe lgpvedetts skpsgpitcp
      121 icmdvhleim qsgrlfvstk rghvfciqyl rhslknansc ptcrkklphr qyhpiym
//
LOCUS       XP_053911792             225 aa            linear   VRT 09-MAR-2023
DEFINITION  translation initiation factor IF-2-like [Cuculus canorus].
ACCESSION   XP_053911792
VERSION     XP_053911792.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055817.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527852) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..225
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..225
                     /product="translation initiation factor IF-2-like"
                     /calculated_mol_wt=21935
     CDS             1..225
                     /gene="LOC128850801"
                     /coded_by="XM_054055817.1:25..702"
                     /db_xref="GeneID:128850801"
ORIGIN      
        1 maaavrargr plpavctalr prcpapsagg garavrergg srsprgeesa ggasagersr
       61 rpgpgpeqga apppaepaes aaartghggr gagsrpgsls vapvmprgga rssggarpap
      121 srrrllpgpg wprrgeaeas rgrrvlrggc rsrapcagra aaaspatsss pscsggsssr
      181 cptsgsaasa agrdsrkvtr ndlqglgdal hpgqggataq qppph
//
LOCUS       XP_053911793             336 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase RBBP6-like [Cuculus canorus].
ACCESSION   XP_053911793
VERSION     XP_053911793.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055818.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527852) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..336
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..336
                     /product="E3 ubiquitin-protein ligase RBBP6-like"
                     /calculated_mol_wt=36261
     Region          4..>272
                     /region_name="COG5222"
                     /note="Uncharacterized conserved protein, contains RING
                     Zn-finger [General function prediction only]"
                     /db_xref="CDD:227547"
     Region          4..76
                     /region_name="DWNN"
                     /note="DWNN domain; pfam08783"
                     /db_xref="CDD:462603"
     Region          <236..310
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..336
                     /gene="LOC128850803"
                     /coded_by="XM_054055818.1:1..1011"
                     /db_xref="GeneID:128850803"
ORIGIN      
        1 mpcihykffs rlnydtvsfs gldislgdlk hqimsreklk asrcelqisn aqtgeeytde
       61 ntlvprnssv ivrripaagv kvarkrcvpr gteavrgtpk avddssapmt laqlikiadl
      121 agadvpeadk ikammiqssq dydpinyvkt ppspytwlrd gkpghyvrng pdnggrhfgs
      181 vprirkctgi pksflkeved pntkgamlan tgkyvipiln aevyarekkk kppllaveps
      241 ssssdpvpee qlpltpppaa fmavsppaap gcpvqsqpaa aapvlpgpqg qsmptaahpk
      301 rggkrpsagg radweletkk skldqltnef aeesme
//
LOCUS       XP_053911794             886 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein homolog [Cuculus canorus].
ACCESSION   XP_053911794
VERSION     XP_053911794.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055819.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527853) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 14% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..886
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..886
                     /product="hydrocephalus-inducing protein homolog"
                     /calculated_mol_wt=97292
     CDS             1..886
                     /gene="LOC128850804"
                     /coded_by="XM_054055819.1:1..2661"
                     /db_xref="GeneID:128850804"
ORIGIN      
        1 mlrlstasld iteidcglql fnkvaeaeit lrnsgkvgft yavlnpsvat agcpqprepl
       61 vlpsteqeih lvsigegpvv yvhpskinfg riqvlqdasr tlhlsnqtla pasfrvemsf
      121 vflhptrdqg pcfpssasvw lvlqagkcsr wrieprkgai ppntelsvav vanlddtgmf
      181 ndevkvfieh ghsyvipiqa igfgttivtd kaiapelnlg phfstipfcy rfkvtnkgrr
      241 thllywtteg fstfrqrhhl paltttegkd ssqnpksacp vfklrplrve lmpgksmemv
      301 legfsstpqv vkerllchav vgseagkvri mqvdvtcefi apvlqvssre lifhvekqps
      361 dvvtlqykpl slknicplpl svvlaleepf lichadrqpl padvqpvkle ageechlsir
      421 fnpaceeglt srevekvlki qflehpheeq vsvrrevyfp slriqttald fgcilndtea
      481 vrytemsncs plpvryrwlf ltdgpasqmr fsppasrcfi taqppqenit rsegsasaes
      541 ssreeaaeep akglgaagdp lqkpavands leakplpsta pkvegteetg slqrrqftqa
      601 epvsvgieev fnilplhgvl lpgesqrvmf tffahaniva rvmalcrveg gptyevalsg
      661 easlinsvld naeidyglqv phaclgrspe titgsgcgvc taaepgasgm sappdkphdi
      721 lksyaesllr tqpeewrkfe gneeaaatld effqqpdvqe lvlgrdptgq lqatthfppt
      781 leskavyfvk kkrekitpen fqsgvmvgdi spspveqlit mmeeglkhai srclpllgpp
      841 hvphhfhqai vvsllqrfiq asvqvseetl qlletgrkva altrhp
//
LOCUS       XP_053911796             635 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein homolog [Cuculus canorus].
ACCESSION   XP_053911796
VERSION     XP_053911796.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055821.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527853) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 36% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..635
                     /product="hydrocephalus-inducing protein homolog"
                     /calculated_mol_wt=70130
     Region          474..>605
                     /region_name="DHC_N1"
                     /note="Dynein heavy chain, N-terminal region 1; pfam08385"
                     /db_xref="CDD:462457"
     CDS             1..635
                     /gene="LOC128850805"
                     /coded_by="XM_054055821.1:1..1908"
                     /db_xref="GeneID:128850805"
ORIGIN      
        1 mdvaekatsf qqfsgscsrt dsktvvlhkp tplpvawwic gleglgegfs vsqdagiigp
       61 csefgmrlcf eatkvddikk tfqvevsdav kllgivqves iqvfveaydi gldinistgr
      121 gyvdfgalkv lgeakqvltl knrgkyeivy sfkleaadtn ipdlashftv hpqkgmlass
      181 gdsmhvhllf hpkremsied kailqcqvid psisegdeia avipirvsgk avcskysisp
      241 aslinfgvvl kgtrktrtft lenkgvlafk fhicrmppkp sahqlqsvqs cmsedtrtna
      301 vlakkskcll qqdagpviat rftlgmftvy pgfgsippgg lqtvtvecra atlgkceehl
      361 sidiqgrapt dnplgipytl faescfpafv vddiesifee hricgnkkly qslqtlqdkg
      421 vfitdenrfv ftivvvghqa earfricnmn kvpcnvvlsv kpistqdseq slleglhplp
      481 rteiefwhtr tvalqcvndq llspramema evlekanscy wpmlqsllrd vsagleeatd
      541 vglhlqqlri llekleqany lqlqpcldrv lcavcllpah cqyyssparv imllrnicnl
      601 liemvepqgw rqlqwegtgq tepppfppaa llrdl
//
LOCUS       XP_053911797             488 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein homolog [Cuculus canorus].
ACCESSION   XP_053911797
VERSION     XP_053911797.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055822.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527853) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 3% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..488
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..488
                     /product="hydrocephalus-inducing protein homolog"
                     /calculated_mol_wt=53485
     CDS             1..488
                     /gene="LOC128850806"
                     /coded_by="XM_054055822.1:1..1467"
                     /db_xref="GeneID:128850806"
ORIGIN      
        1 marstaahky spfltllrgf sagrgcvdfg alkvlskakq vltlknrgky eivysfklea
       61 adtnipdlas hftvhpqkgm lassgdsmhi hllfhpkrem siedkailqc qvidpsiseg
      121 deiaavipir vsgkavfsky sispaslinf gvvlkgtrkt htftlenkgv lafkfhicrv
      181 ppkpsahqlq svqscmsedt rtnavlakks kcllqqdagp vvatrftlgm ftvypgfgsi
      241 ppgdrqtvti ecraatlgkc kehlsidiqg rnptdnplgi pytlfaescf pafvvddies
      301 ifeehricgn kklyqslqtv qdkgvfitde nrfiftnvvv ghqaearfki rnvnkvpcdv
      361 vlsvkpiste hkndikgifk vdplrmcvps rshafatvtf tplkaknyrc tfeasldiqa
      421 spaatkaqsl tfsitgagnl pqvtvlrlvl rdekgnplll fkklllgdse elplvicnsg
      481 ivpvqvrs
//
LOCUS       XP_053911798             719 aa            linear   VRT 09-MAR-2023
DEFINITION  dynein axonemal heavy chain 17-like [Cuculus canorus].
ACCESSION   XP_053911798
VERSION     XP_053911798.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055823.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527853) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..719
                     /product="dynein axonemal heavy chain 17-like"
                     /calculated_mol_wt=81950
     Region          180..717
                     /region_name="DHC_N1"
                     /note="Dynein heavy chain, N-terminal region 1; pfam08385"
                     /db_xref="CDD:462457"
     CDS             1..719
                     /gene="LOC128850807"
                     /coded_by="XM_054055823.1:163..2322"
                     /db_xref="GeneID:128850807"
ORIGIN      
        1 msappdkphd ilksyaesll rtqpeewrkf egneeaaatl deffqqpdvq elvlgrdptg
       61 qlqatthfpp tleskavyfv kkkrekitpe nfqsgvmvgd ispspveqli tmmeevvspl
      121 lseknmaglp gvvvedvvre trqlkkemlv mrgkiqgkpl lvlpehldsr wagpmdnsml
      181 ptietvvtqw shqirdvlsk dseqsllegl hplprteief whtrtvalqc vndqllspra
      241 temaevleka nscywpmlqs llrdvsagle eakdvglhlq qlrillekle qanylqlqpc
      301 ldrvlcavcl lpahcqyyss parvimllrn icnlliemtr tfvsregvmk glqgetqeil
      361 grirlsiptv ekffqsysty csdpiptllq eelqlwklpp fllfrrmdsf lqrlktieel
      421 yqtavefqkl ekaelegvrg kifrsqlfqi ceevselika fveckydpld pteeqwnkdf
      481 aafqkkmedv drrlatifrq gfedcsrlas avksvhmfss llerplikae vspcysalls
      541 mfhaelknvr vlfeaqtasl pspgagqvin knsppvagql awalelqhql erpyrdlfai
      601 shpamasaea kevsgqyeem mgllqgysek vyeewvhgdg qdchfgleqp lilrdpvssl
      661 livnfsetlv avlqevkymk flqkkdiprs aeslfaqres fqklvddler ivgwyneag
//
LOCUS       XP_053911799             166 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein-like [Cuculus canorus].
ACCESSION   XP_053911799
VERSION     XP_053911799.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055824.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527853) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..166
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..166
                     /product="hydrocephalus-inducing protein-like"
                     /calculated_mol_wt=18281
     CDS             1..166
                     /gene="LOC128850808"
                     /coded_by="XM_054055824.1:193..693"
                     /db_xref="GeneID:128850808"
ORIGIN      
        1 mdvfrldpps irlkpnekqe lsiwayptst glkednlicc iednpdpvvf rlccqgvqvk
       61 levspkkvqf nrlllhrtds ktvvlhkptp lpvawrirgl eglgegfsvs qdagiigpcs
      121 efgmrlcfea tkvddikktf qvevsdaekl lgivqvescp slcggl
//
LOCUS       XP_053911800             166 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein-like [Cuculus canorus].
ACCESSION   XP_053911800
VERSION     XP_053911800.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055825.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527853) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..166
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..166
                     /product="hydrocephalus-inducing protein-like"
                     /calculated_mol_wt=18306
     CDS             1..166
                     /gene="LOC128850809"
                     /coded_by="XM_054055825.1:104..604"
                     /db_xref="GeneID:128850809"
ORIGIN      
        1 mdvfrldpps irlkpnekqe lniwpyptst glkednlicc iednpdpvvf rlccqgvqvk
       61 levspkkvqf nrlllhrtds ktvvlhkptp lpvawrirgl eglgegfsvs qdagiigpcs
      121 efgmrlcfea tkvdsikktf qvevsdaekl lgivqvescp slcggl
//
LOCUS       XP_053911801             784 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein-like, partial [Cuculus canorus].
ACCESSION   XP_053911801
VERSION     XP_053911801.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055826.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527853) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 9% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the carboxy end.
FEATURES             Location/Qualifiers
     source          1..784
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..>784
                     /product="hydrocephalus-inducing protein-like"
     CDS             1..784
                     /gene="LOC128850812"
                     /coded_by="XM_054055826.1:110..>2461"
                     /db_xref="GeneID:128850812"
ORIGIN      
        1 mpvtfnlrip gdgngehsat ssvlmagkth lsrrrgaqgy irpteftitp crgtirpqaf
       61 ldiqvtlcsn tlksyklalv vdvegvgkkv ssllltarcv vpllralnpv mtfgqcflkv
      121 pyqqmltlvn dsnlpgcyri lpqeykdaaa vrysslapcg iiqphssvev pftlqaqvvg
      181 eqdtvarvmt igsegaplki hlvsigegpv vyvhpskinf griqvlqdas rtlhlsnqtl
      241 apasfrvema gkcsrwriep rkgaippnte lsvavvanld dtgmfndevk vfiehghsyv
      301 ipiqaigfgt tivtdkaiap elnlgphfst ipfcyrfket nkgrrthlly wttegfstfr
      361 qrhhlpaltt tegkdssqnp ksacpvfklr plrvelmpgk smemvlegfs stpqvvkerl
      421 lchavvgsea gkvrimqvdv tcefiapvlq vssrelifhv ekqpsdvvtl qykplslkni
      481 cplplsvvla leepflicha drqplpadvq pvkleageey hlsirfnpac eegltsreve
      541 kvlkiqfleh pheeqvsvrr evyfpslcih tmaldfgcil ndteavryte msncsplpvr
      601 yrwlfltdgp asqmrfsppa srcfitaqpp qenitrsegs asaesssree aaeepakglg
      661 aagdplqkpa vandsleakp lpstapkveg teetgslqrr qftqaepvsv gieevfnilp
      721 lhgvllpges qrvmftffah anivarvmal crveggptye valsgeasli nsvldnaeid
      781 yglq
//
LOCUS       XP_053911802             124 aa            linear   VRT 09-MAR-2023
DEFINITION  hydrocephalus-inducing protein homolog [Cuculus canorus].
ACCESSION   XP_053911802
VERSION     XP_053911802.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055827.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527853) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..124
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..124
                     /product="hydrocephalus-inducing protein homolog"
                     /calculated_mol_wt=13725
     CDS             1..124
                     /gene="LOC128850813"
                     /coded_by="XM_054055827.1:9..383"
                     /db_xref="GeneID:128850813"
ORIGIN      
        1 mdtnipdlaf hfpvqpqrgt lttsgkpmqv qllfhskmem nnedkpilhc qvmdpsiseg
       61 geiitvipvr vsakaafsky sispaslinf gvtlkgtrkt rtftlenkgv lafqfyiqal
      121 serr
//
LOCUS       XP_053911804             147 aa            linear   VRT 09-MAR-2023
DEFINITION  protein ELYS-like [Cuculus canorus].
ACCESSION   XP_053911804
VERSION     XP_053911804.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055829.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527854) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..147
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..147
                     /product="protein ELYS-like"
                     /calculated_mol_wt=17225
     CDS             1..147
                     /gene="LOC128850815"
                     /coded_by="XM_054055829.1:587..1030"
                     /db_xref="GeneID:128850815"
ORIGIN      
        1 mavklqfird cawkkvvytk defdhicvpl fdgscrfldp ktlqsrqhcq cllnnlsrvl
       61 kclqreqqel tdkdlrnrqv lasnfsvhaq mviwfcqsgl lpegsdgtmh lstsfynypl
      121 lhtcytgqrq rlehlsrhcw isiywka
//
LOCUS       XP_053911805             147 aa            linear   VRT 09-MAR-2023
DEFINITION  protein ELYS-like [Cuculus canorus].
ACCESSION   XP_053911805
VERSION     XP_053911805.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055830.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527854) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..147
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..147
                     /product="protein ELYS-like"
                     /calculated_mol_wt=17225
     CDS             1..147
                     /gene="LOC128850815"
                     /coded_by="XM_054055830.1:584..1027"
                     /db_xref="GeneID:128850815"
ORIGIN      
        1 mavklqfird cawkkvvytk defdhicvpl fdgscrfldp ktlqsrqhcq cllnnlsrvl
       61 kclqreqqel tdkdlrnrqv lasnfsvhaq mviwfcqsgl lpegsdgtmh lstsfynypl
      121 lhtcytgqrq rlehlsrhcw isiywka
//
LOCUS       XP_053911806             147 aa            linear   VRT 09-MAR-2023
DEFINITION  protein ELYS-like [Cuculus canorus].
ACCESSION   XP_053911806
VERSION     XP_053911806.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055831.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527854) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..147
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..147
                     /product="protein ELYS-like"
                     /calculated_mol_wt=17225
     CDS             1..147
                     /gene="LOC128850815"
                     /coded_by="XM_054055831.1:121..564"
                     /db_xref="GeneID:128850815"
ORIGIN      
        1 mavklqfird cawkkvvytk defdhicvpl fdgscrfldp ktlqsrqhcq cllnnlsrvl
       61 kclqreqqel tdkdlrnrqv lasnfsvhaq mviwfcqsgl lpegsdgtmh lstsfynypl
      121 lhtcytgqrq rlehlsrhcw isiywka
//
LOCUS       XP_053911807             494 aa            linear   VRT 09-MAR-2023
DEFINITION  golgin subfamily A member 6-like protein 24 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053911807
VERSION     XP_053911807.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055832.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527854) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..494
                     /product="golgin subfamily A member 6-like protein 24
                     isoform X1"
                     /calculated_mol_wt=56770
     Region          <178..473
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..494
                     /gene="LOC128850817"
                     /coded_by="XM_054055832.1:769..2253"
                     /db_xref="GeneID:128850817"
ORIGIN      
        1 meqdnqtdqa vvlgeavaad tladssdtml epwlqmqlee vlleehaleq qtalassape
       61 dsafdqhahw rlledhlrvc kmhfcfrdvm ldaipaavgl lgccwiyshr kkqanghekk
      121 argfkeeqqe elhkkdssle paagvsqslp lsseekhpdn epstsllatg smtlgsirek
      181 rreelemwek elmvkeahla qqneelkraw qdlqsdreel kqqkasfhld lenlrvlkee
      241 velekaqfkq nmeefkrdqe elqlqkvsfh ldqeglctai eefkrekekf rldmerfpet
      301 rlvpdhsqla gaeatgased nqgdftqeaa eelqarvaag eersyasthc qmcealqaql
      361 aemnnanthl aeenahlrrq malteevqae nahlkskleh vakvpevven elvgrikmae
      421 wsqelekere etkstvqrks eegrclqraq teehrehkea lqaiqaklte lngrflkhde
      481 qcqqflqele qlek
//
LOCUS       XP_053911808             413 aa            linear   VRT 09-MAR-2023
DEFINITION  golgin subfamily A member 6-like protein 24 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053911808
VERSION     XP_053911808.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055833.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527854) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..413
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..413
                     /product="golgin subfamily A member 6-like protein 24
                     isoform X2"
                     /calculated_mol_wt=47687
     Region          <97..392
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..413
                     /gene="LOC128850817"
                     /coded_by="XM_054055833.1:288..1529"
                     /db_xref="GeneID:128850817"
ORIGIN      
        1 mhfcfrdvml daipaavgll gccwiyshrk kqanghekka rgfkeeqqee lhkkdsslep
       61 aagvsqslpl sseekhpdne pstsllatgs mtlgsirekr reelemweke lmvkeahlaq
      121 qneelkrawq dlqsdreelk qqkasfhldl enlrvlkeev elekaqfkqn meefkrdqee
      181 lqlqkvsfhl dqeglctaie efkrekekfr ldmerfpetr lvpdhsqlag aeatgasedn
      241 qgdftqeaae elqarvaage ersyasthcq mcealqaqla emnnanthla eenahlrrqm
      301 alteevqaen ahlksklehv akvpevvene lvgrikmaew sqelekeree tkstvqrkse
      361 egrclqraqt eehrehkeal qaiqakltel ngrflkhdeq cqqflqeleq lek
//
LOCUS       XP_053911809             314 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14C36-like [Cuculus canorus].
ACCESSION   XP_053911809
VERSION     XP_053911809.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055834.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527855) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 3% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..314
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..314
                     /product="olfactory receptor 14C36-like"
                     /calculated_mol_wt=34739
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..314
                     /gene="LOC128850818"
                     /coded_by="XM_054055834.1:1..945"
                     /db_xref="GeneID:128850818"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylstllgn gliitaiicd hhlhtpmyff
       61 llnlsvldlg sisttvpksm anslwdtrei syagcvaqff lfaffisaeh sfltimsydr
      121 yvaickplry gtllgsracv hmaaaawgag flyallhtan tfslplckgn aveqffceip
      181 qvlklscshs ylrevglsvv tlfiifscfi fivasyvqif ravlripseq grhkafstcl
      241 phlavvslfv stamfahlkp pfissplldl vvavpyavvp palnpiiysl rnqqlkdavw
      301 klitgyadns rasa
//
LOCUS       XP_053911810             310 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911810
VERSION     XP_053911810.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055835.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527855) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..310
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..310
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=34452
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..310
                     /gene="LOC128850819"
                     /coded_by="XM_054055835.1:1..933"
                     /db_xref="GeneID:128850819"
ORIGIN      
        1 msnsssitqf lllaftdtre lqllhfwlfl giylstllgn gliitaitcd hhlhtptyff
       61 llnlslldlg sisttipkam anslwntrvi syvgcaaqif flffffgaey slltvmaydr
      121 yvaickplhy gillgtracv hmaaaawgag flhallhtan tfslplcqgn avdqffcevp
      181 qilklscshs yfrevgllvv gffvelgsff fivvsyvqif ravlripseq grhkafstcl
      241 phmavvslfv stgmiaylkp pstsspsldl vmavlysvvp pavnpliysl rnqqlkdavw
      301 klmtvlfkhh
//
LOCUS       XP_053911811             305 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911811
VERSION     XP_053911811.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055836.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527855) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=33455
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..305
                     /gene="LOC128850821"
                     /coded_by="XM_054055836.1:1..918"
                     /db_xref="GeneID:128850821"
ORIGIN      
        1 msngssitqf lllafadtre lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 llnlalldmg sisstvpksm anslwgirai sytgcvvqvf fffflisaey slltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flhallhtan tfslplcqgn aveqffceip
      181 hilklscsda alrefgfldv saslyfgcfv fivvsyvrif ravlripseq gqhkafstcl
      241 phlavvslfl gtgmiaylkp lsisspsldl avsflysvvp pavnpliysl rnqqlkgavw
      301 klisg
//
LOCUS       XP_053911813             277 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14C36-like, partial [Cuculus canorus].
ACCESSION   XP_053911813
VERSION     XP_053911813.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055838.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527855) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 5% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the amino end.
FEATURES             Location/Qualifiers
     source          1..277
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         <1..277
                     /product="olfactory receptor 14C36-like"
     Region          1..259
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(46,49..50,62..67,69..70,73,118,120..124,160,
                     163..165,167..169,171..172,217,220..221,223..224,227,
                     233..234,236..238,241,244..245)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          62..92
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          104..125
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          160..190
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          197..227
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          234..259
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..277
                     /gene="LOC128850822"
                     /coded_by="XM_054055838.1:<1..834"
                     /db_xref="GeneID:128850822"
ORIGIN      
        1 laallgngli ittiicdhhl htpmyfflln lslldlgyis ttipktlans lwntraisyg
       61 gcaaqiffvl flfgaeysil tvmaydryia ickpldygtl lgsracvhma aaawgagflh
      121 allntantfs lplcqgnavv qffceipqil klscshsyfr evgllvvgvf valgcfvfiv
      181 vsyvqifrav lripseqgqh rafstclphl vavslfvsts miaylkppst sspsldlvma
      241 vlysvvppav npliyslrnq qlkdavwklm tvlfkhh
//
LOCUS       XP_053911814             247 aa            linear   VRT 09-MAR-2023
DEFINITION  A-kinase anchor protein 13-like [Cuculus canorus].
ACCESSION   XP_053911814
VERSION     XP_053911814.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055839.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527855) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 24% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..247
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..247
                     /product="A-kinase anchor protein 13-like"
                     /calculated_mol_wt=28210
     Region          150..>242
                     /region_name="PLN02328"
                     /note="lysine-specific histone demethylase 1 homolog"
                     /db_xref="CDD:215187"
     CDS             1..247
                     /gene="LOC128850823"
                     /coded_by="XM_054055839.1:783..1526"
                     /db_xref="GeneID:128850823"
ORIGIN      
        1 mvslspsret lrfcsmalrf rdvlfyavpg avgllgcwwi ysrmkkkals pkegqeekvq
       61 ekdphslpis akeecreket sasvlpagat mpvtspekwe awekelmeke arlaqreqql
      121 qrwwqdlere rkelelekas lqlkgqsqip nplkkltrvl tqsgatessk eksparpqqg
      181 hidsepsvsp krntllmtlk ekspfrspdk tksmdqaaee eprcenapsv qpkprrrsrr
      241 gkqkedc
//
LOCUS       XP_053911815             247 aa            linear   VRT 09-MAR-2023
DEFINITION  A-kinase anchor protein 13-like isoform X1 [Cuculus canorus].
ACCESSION   XP_053911815
VERSION     XP_053911815.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055840.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527855) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..247
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..247
                     /product="A-kinase anchor protein 13-like isoform X1"
                     /calculated_mol_wt=28138
     CDS             1..247
                     /gene="LOC128850824"
                     /coded_by="XM_054055840.1:162..905"
                     /db_xref="GeneID:128850824"
ORIGIN      
        1 mvslspsret lrfcsmalrf rdvlfyavpg avgllgcwwi ysrmkkkaqs pkegqeekvp
       61 ekdphsvpis akeecrenet sasvlpagat msdtspekwe awekelmeke arlaqreqql
      121 qrwwqdlere rkelelekas lqlkgqsqip nplkkltrvl tqsgatessk eksparpqqg
      181 hvdsepsvsp krntllmtlk ekspfrspdt tkpkdqaaee eprcenapsv qpkpkrrsrr
      241 gkrkedc
//
LOCUS       XP_053911816             232 aa            linear   VRT 09-MAR-2023
DEFINITION  A-kinase anchor protein 13-like isoform X2 [Cuculus canorus].
ACCESSION   XP_053911816
VERSION     XP_053911816.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055841.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527855) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..232
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..232
                     /product="A-kinase anchor protein 13-like isoform X2"
                     /calculated_mol_wt=26443
     CDS             1..232
                     /gene="LOC128850824"
                     /coded_by="XM_054055841.1:388..1086"
                     /db_xref="GeneID:128850824"
ORIGIN      
        1 malrfrdvlf yavpgavgll gcwwiysrmk kkaqspkegq eekvpekdph svpisakeec
       61 renetsasvl pagatmsdts pekweaweke lmekearlaq reqqlqrwwq dlererkele
      121 lekaslqlkg qsqipnplkk ltrvltqsga tesskekspa rpqqghvdse psvspkrntl
      181 lmtlkekspf rspdttkpkd qaaeeeprce napsvqpkpk rrsrrgkrke dc
//
LOCUS       XP_053911817             423 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: acrosin-like, partial [Cuculus canorus].
ACCESSION   XP_053911817
VERSION     XP_053911817.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055842.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527855) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 1% of CDS bases
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the amino end.
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         <1..423
                     /product="LOW QUALITY PROTEIN: acrosin-like"
     Region          21..354
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            22
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(66,212,309)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(303,330,332)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..423
                     /gene="LOC128850827"
                     /coded_by="XM_054055842.1:<1..1274"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=3
                     /db_xref="GeneID:128850827"
ORIGIN      
        1 sgshrtcglr pldyygygsa rvvggrdaqp gawpwivsvq kvrethishv cggsiihpqw
       61 vlsaahcfvd aqxgsreqgd pqnpgtgpvc sitgnsqpgs lqctqkkagv vplhprclhl
      121 hspcgsgmlg hrcprsfprs lgkqearscw aaparasaps hpsrhlpsrn vpawrvvagt
      181 tsltamgpea qvryvrqiii hedydnttqa ndialmelye pfrcgpyvql acvpdfslql
      241 wqlrncyvsg wgvttarsgg lppalqeakv plidiqvcns sgwyrgdihp hnlcagypqg
      301 gidtcqgdsg gplvcqdsya drfwlvglts fgagcararr pgvytstrhf rdwiltqmmr
      361 rsvkaatatq rfwshfltts npvempqtte psysssclyp lnklvdfftk vqeylqvlkg
      421 gst
//
LOCUS       XP_053911818             428 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein J1-B-like [Cuculus canorus].
ACCESSION   XP_053911818
VERSION     XP_053911818.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055843.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527856) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..428
                     /product="forkhead box protein J1-B-like"
                     /calculated_mol_wt=46720
     Region          <46..329
                     /region_name="COG5025"
                     /note="Transcription factor of the Forkhead/HNF3 family
                     [Transcription]"
                     /db_xref="CDD:227358"
     Region          123..201
                     /region_name="FH_FOXJ1"
                     /note="Forkhead (FH) domain found in Forkhead box protein
                     J1 (FOXJ1) and similar proteins; cd20023"
                     /db_xref="CDD:410797"
     Site            order(128,146..147,150,169..170,172..173,176,183,193..195,
                     197)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410797"
     CDS             1..428
                     /gene="LOC128850828"
                     /coded_by="XM_054055843.1:200..1486"
                     /db_xref="GeneID:128850828"
ORIGIN      
        1 maegrlsheq agkdrgqegi vrdsphkdds lpnltwlldf sitsasmgns sccpsgpdph
       61 tcqgmpssav pcsplgtdpa cvgtphtpcv pvssstskte hhvvsmhaql tegidyknnp
      121 yvkpphsyat licmamease ephitlsaic kwisdnfcyf rqadpgwqns irhnlssnkc
      181 fikvprekgk pgrggfwkld pqyadrlkss tfkkqrmhpa qihpasteka qqeaqcgasl
      241 atsgcaskkv fsvsmesqql leefeefikn qnqnpvdvka glkrkqplpk qtakvrrlsn
      301 salltqeeqt qlgslkgdfd telnrelstl rdlevtppvs pekhnleviv hgqhvdcpqg
      361 leqvlaesnq ndlsldesst aasflqhlfd egtsdclsna vnveqlfdvs disvpadgsd
      421 wsslasll
//
LOCUS       XP_009555606             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16 [Cuculus canorus].
ACCESSION   XP_009555606
VERSION     XP_009555606.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557311.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527856) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555606.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14A16"
                     /calculated_mol_wt=35187
     Region          24..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC104056101"
                     /coded_by="XM_009557311.2:46..1002"
                     /db_xref="GeneID:104056101"
ORIGIN      
        1 msnsssitqf lllafadtre lqqlhfwlfl giylaallgn glvittiacd hhlhtpmyff
       61 llnlsvidlg sisttvpksm snslwdnrni sysgcvaqif lyvffisaef slltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flhallhtan tfslplcqgn avdqffceip
      181 qfiklscshs nrrevglldv svclffgcfv fivvsyvqif ravlripseq grqkafsmcl
      241 phlavvslfi staefaylkp psissppldl lvsvlysvvp palnpliysl rnqqlkdavw
      301 kliigwfsqa mncsspsa
//
LOCUS       XP_053911819             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14J1-like [Cuculus canorus].
ACCESSION   XP_053911819
VERSION     XP_053911819.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055844.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527857) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14J1-like"
                     /calculated_mol_wt=34924
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850831"
                     /coded_by="XM_054055844.1:25..981"
                     /db_xref="GeneID:128850831"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl siylaallgn gliittiace hrlhtpmyff
       61 llnlsildlg sistivpksm anslwstrai shtgcasqvf lflffiaaey slltvmsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flnallqttn tfslplcqgn aveqffceip
      181 qilklscshs ylreagisvf gaclvfgcfv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvslfi stagfaylkp rsisspsldl vvsvlysvvp palnpliysl rnqqlkdavw
      301 klisgwvsea incssyst
//
LOCUS       XP_053911820             267 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein J1-B-like [Cuculus canorus].
ACCESSION   XP_053911820
VERSION     XP_053911820.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055845.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527857) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..267
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..267
                     /product="forkhead box protein J1-B-like"
                     /calculated_mol_wt=29443
     Region          <6..163
                     /region_name="COG5025"
                     /note="Transcription factor of the Forkhead/HNF3 family
                     [Transcription]"
                     /db_xref="CDD:227358"
     Region          <7..47
                     /region_name="Forkhead"
                     /note="Forkhead domain; pfam00250"
                     /db_xref="CDD:459732"
     CDS             1..267
                     /gene="LOC128850832"
                     /coded_by="XM_054055845.1:1..804"
                     /db_xref="GeneID:128850832"
ORIGIN      
        1 mgarslkssi rqnlssnkcf ikvprekgkp grggfwkldp qyadrlksga fkkqrmrpvq
       61 ihpastekaq qeaqrgasla tydcapnkvf svsmesqqll eefeefiknq npnlvdvkag
      121 lkrkqplpkq makvrrlsns alltqeeqtq lgslkgdtdt nlnrefstsg dlevtppvsp
      181 kkhnlevvvh gqhvdcpqgl eqvlsesnqn dlsldessta asflqhlfde gtsdsfcntv
      241 nveqlfnvsd isvpadvsdw sslasll
//
LOCUS       XP_053911822             358 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911822
VERSION     XP_053911822.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055847.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527857) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 11% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..358
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=39274
     Region          26..295
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          27..53
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          60..86
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(82,85..86,98..103,105..106,109,154,156..160,196,
                     199..201,203..205,207..208,253,256..257,259..260,263,
                     269..270,272..274,277,280..281)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          98..128
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          140..161
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          196..226
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          233..263
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          270..295
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..358
                     /gene="LOC128850834"
                     /coded_by="XM_054055847.1:4..1080"
                     /db_xref="GeneID:128850834"
ORIGIN      
        1 mkqmsnrssi tqflllafad trelqllhfw lflgtylaal lgngliitti acdhhlhtpm
       61 yffllnlsll dlgsisttvp ksmanslwnt raisyvgcva qvffvlflfg aeyslltvms
      121 ydryvaickp lhygtllgsr acvhmaaaaw gagflyallh tantfslplc qgnaveqffc
      181 eipqilklsc shsdlreagl ldvsaclffg ffvfivvsyv qifravlrip svqgqhkafs
      241 tclphlavvs lflstagfay lkppsissps ldivvsvlys vvppalnpli yslrnkdlkd
      301 avlklifnpg ssgvlekgrc hthlqenqep glgelqtvqp tpnpgewgah ilqpfpdp
//
LOCUS       XP_053911823             305 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14J1-like [Cuculus canorus].
ACCESSION   XP_053911823
VERSION     XP_053911823.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055848.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527857) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="olfactory receptor 14J1-like"
                     /calculated_mol_wt=33517
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..305
                     /gene="LOC128850835"
                     /coded_by="XM_054055848.1:16..933"
                     /db_xref="GeneID:128850835"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 llnlsvldlg sisttvpksm anslwdnrti sysgcvsqvf lfaffisaey slltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flnallhtan tfslplcqgn aveqffceip
      181 qilklscshs dlrevglldv saclffgcfv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvslfv staafaylkp psissppldl vvsvlysvvp palnpliysl rnqqlkdavw
      301 klktg
//
LOCUS       XP_053911824             305 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911824
VERSION     XP_053911824.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055849.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527857) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=33658
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..305
                     /gene="LOC128850836"
                     /coded_by="XM_054055849.1:79..996"
                     /db_xref="GeneID:128850836"
ORIGIN      
        1 msnsssitqf lllafavtre lqllhfwlfl giylaallgn gliittitcd hhlhipmyff
       61 llnlsildlg sisatvpksm tnslwdnrai sysgcvaqlf vfiffigaey clltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag fiyallhtan tfslplcqgn avdqffceip
      181 qilklscshs yiwefglltv safvafgcfv fivvsyvhif ravlripseq gqhkafstcl
      241 phlavvslfi stgvfaylkp psisspsldl vvsflysvvp palnpliysl rnqqlkdavw
      301 klisg
//
LOCUS       XP_053911825             444 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: forkhead box protein J1-B-like [Cuculus
            canorus].
ACCESSION   XP_053911825
VERSION     XP_053911825.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055850.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527857) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 3% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..444
                     /product="LOW QUALITY PROTEIN: forkhead box protein
                     J1-B-like"
                     /calculated_mol_wt=48591
     Region          <62..340
                     /region_name="COG5025"
                     /note="Transcription factor of the Forkhead/HNF3 family
                     [Transcription]"
                     /db_xref="CDD:227358"
     Region          139..217
                     /region_name="FH_FOXJ1"
                     /note="Forkhead (FH) domain found in Forkhead box protein
                     J1 (FOXJ1) and similar proteins; cd20023"
                     /db_xref="CDD:410797"
     Site            order(144,162..163,166,185..186,188..189,192,199,209..211,
                     213)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410797"
     CDS             1..444
                     /gene="LOC128850837"
                     /coded_by="XM_054055850.1:1..1335"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /db_xref="GeneID:128850837"
ORIGIN      
        1 mtaqkqtqpd ltypgrtaeg rlsheqagkd rgqegivrds pdmddslpnl twlldfsits
       61 asmgnssccp sgpdphtcqg mpssavpcsp lgtdpacvet phtpcvpvss stskmenhiv
      121 smhpqlmegi dyknnpfvkp pysyatlicm ameaseephi tlsaiykwim dnfcyfrqad
      181 pgwqssirqn lssnkcfikv prekgkpgrg gfwkldpqya drlksgafkk qrmrpvqihp
      241 astekaqqea qrgaslatsg caskkvfsvs mesqqlleef eefiknqnhn pvdvkaglkr
      301 kqplpkqmak vrrlsssall tqeeqtqlgs lkgdtdtnln refstsgdle vtppvspknh
      361 nlevvvhgqh vdcpqgleqv laesnqngls lgesstaasf lqhlfdegts dsfcntvkve
      421 qlfdvsdisv padvsdwssl asll
//
LOCUS       XP_053911826             763 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850838 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911826
VERSION     XP_053911826.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055851.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527858) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..763
                     /product="uncharacterized protein LOC128850838 isoform X1"
                     /calculated_mol_wt=81528
     Region          24..>133
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          25..49
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          58..86
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          101..123
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          <559..690
                     /region_name="COG4233"
                     /note="Thiol-disulfide interchange protein, contains DsbC
                     and DsbD domains [Posttranslational modification, protein
                     turnover, chaperones, Energy production and conversion]"
                     /db_xref="CDD:443377"
     Region          <628..>691
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          630..646
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..763
                     /gene="LOC128850838"
                     /coded_by="XM_054055851.1:154..2445"
                     /db_xref="GeneID:128850838"
ORIGIN      
        1 metappptps gtpwpprdar laaaevgvla viltlalggn vlvllalrpr rghapprpap
       61 plrrylrhls madlgvaggq vlpqllwdvt drfqgpdvlc rvtkylqgva mfapayvava
      121 maynrhraic rplggrrggg hrdglcwgsw gwrrrgsvdg eqghdnnmer vqshgdtkhg
      181 aqgptgcwgr rcgdirggtw ghigcwgqss edtgngacgc edtrdgaqgp vgcwerecdn
      241 irdskdgawg cgdircgawg tigcwgwgcg dttdgtqghr dakngawgps rfwgwkcgdt
      301 tdevqgredi rgatwrptgc waqgcgntwp trygtqghed tkdgtqeptg cwgqghsgtm
      361 ngtqghgdtr dgtrgcigcw gqrsgdiwet rdakrgpigc wgwgggdsrd galgrrdtwd
      421 gvweptgcsg qgdsediitt tsplcppavp stlmsptlyv spispaphvt slrsstpcai
      481 pipptshvnq vspiphvsls mssdphvtpp tspslspsyq vptrtllltt tewvqatmgr
      541 seatmrcsqa iirwsqatmr wswaamgwsw aimgwslatm sltqatlrwa waimrwvqav
      601 mgwarvtmgw aqsvvewtrs tvvwvqgrwg platawtlaf lfglpqvgif gqqdvgageq
      661 dcwatfiqpw garayvtwva lavlvapavl lggvtggsdt sigttgtser tgkgkgqels
      721 dgtsgvgglh rvleslllcp vvgslgspgs ggrvtwvnpa dpt
//
LOCUS       XP_053911827             113 aa            linear   VRT 09-MAR-2023
DEFINITION  vasopressin V2 receptor-like isoform X2 [Cuculus canorus].
ACCESSION   XP_053911827
VERSION     XP_053911827.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055852.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527858) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..113
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..113
                     /product="vasopressin V2 receptor-like isoform X2"
                     /calculated_mol_wt=12213
     Region          <2..90
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          26..48
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          60..85
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..113
                     /gene="LOC128850838"
                     /coded_by="XM_054055852.1:146..487"
                     /db_xref="GeneID:128850838"
ORIGIN      
        1 mevavtralg prgrrkglgr araksyrmal vvlgvyigcw spffcaqlwa vwdpqapveg
       61 paftipmlla sltsctnpwi yaafstslsr amgrilcpcr qqrplgsspa pcq
//
LOCUS       XP_053911828             833 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 36-like [Cuculus canorus].
ACCESSION   XP_053911828
VERSION     XP_053911828.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055853.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527859) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 43% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..833
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..833
                     /product="ubiquitin carboxyl-terminal hydrolase 36-like"
                     /calculated_mol_wt=91343
     Region          158..458
                     /region_name="Peptidase_C19E"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02661"
                     /db_xref="CDD:239126"
     Site            order(163,168,419,436)
                     /site_type="active"
                     /db_xref="CDD:239126"
     CDS             1..833
                     /gene="LOC128850839"
                     /coded_by="XM_054055853.1:1..2502"
                     /db_xref="GeneID:128850839"
ORIGIN      
        1 mpppvsprsa pvppreaerg dtgrvrwrrs pvrsgdtcae rrrrgsppgs aiaieehlef
       61 gkdgrelhqe latpfqapqq kkmevepieh stseqlnrlq gkdellspck eaadspepaq
      121 qrsehvpgmq gdgiplpkkv lfpverlsmq wqrthqigag lknlgntcfl nstvqcltyt
      181 pplanyllsr ehsrtcqqgk fcmlctmekh ilqvfsssgs aiqptsfvrn ikkiathirl
      241 grqedahefl sftinamqra cldgcteldq qsqtttlvhq ifggflrsrv mckacnwpsd
      301 tyepfldlav eieeaesieq alklfvrpem lceenaymcd kcktkvqaik rfsihrassv
      361 livslkrfsi fsggkikkev typevldirp ylsedkgdpm nyelyavlvh sgyscrsghy
      421 ycyvkasdgq wyqmndavvc ltnlkvvlnq qayvlfyvrt pgtsksfeep iaeavsiaps
      481 qpvmgqkpem qpanklsgqe evgvsvpcrt cstgpklpta skllqelrky lsavpgvkpp
      541 apedsrrakl krsllavsav eqssstsppa akklalsaek gstpeavsrd drctqlqlql
      601 peqmhptdtt hpdstsqpsg klstsssalk lpnaekpplk iiiklsalgd lssplkkrhh
      661 radgspqsqs vngeddtssp prkksctpgn svsitgeeag ksasggqkep gcqdtsssel
      721 kvpnaekppl kiiiklsvle dlssllkkrh hradgsppaq svngkddtss pprkksctpg
      781 nsvsitgeee agksasggqk epgcqelgae lkkkegkkkk rrrmeskecf sgr
//
LOCUS       XP_053911829             783 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 36-like [Cuculus canorus].
ACCESSION   XP_053911829
VERSION     XP_053911829.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055854.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527859) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 49% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..783
                     /product="ubiquitin carboxyl-terminal hydrolase 36-like"
                     /calculated_mol_wt=85914
     Region          236..536
                     /region_name="Peptidase_C19E"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02661"
                     /db_xref="CDD:239126"
     Site            order(241,246,497,514)
                     /site_type="active"
                     /db_xref="CDD:239126"
     CDS             1..783
                     /gene="LOC128850840"
                     /coded_by="XM_054055854.1:1..2352"
                     /db_xref="GeneID:128850840"
ORIGIN      
        1 mpppvsprpa pvppreaerg dtgrvrwrrs pvrsgdtcae rrrrgsvsva grsgtagtap
       61 rrqgrggagr ealgdrggdr mgrpggageg ersgplpwpr daaprsgtlw rpprpldrpl
      121 rspqppgsai aieehlefgk dgrelhqela tpfqapqqkk mevepiehst seqpnrlqgk
      181 dellspckea adspepaqqr sehvpgmqgd giplpkkvlf pverlsmqwq rthqigaglk
      241 nlgntcflns tvqcltytpp lanyllsreh srtcqqgefc mlctmekhil qvfsssgsai
      301 qptsfvrnik kiathirlgr qedaheflsf tinamqracl dgcteldqqs qtttlvhqif
      361 ggflrsrvmc kacnwpsdty epfldlavei eeaesieqal klfvrpemlc eenaymcdkc
      421 ktkvqaikrf sihrassvli vslkrfsifs ggkikkevty pevldirpyl sedkgdpmny
      481 elyavlvhsg yscrsghyyc yvkasdgqwy qmndavvclt nlkvvlnqqa yvlfyvrtpg
      541 tsksfeepia eavsiapsqp vmgqkpemqp anklsgqeev gvsvpcrtcs tgpklptask
      601 llqelrkyls avpgvkppap edsrraklkr sllavsaveq ssstsppaak klalsaekgs
      661 tpeavsrddr ctqlqlqlpe qmhpmdithp dstsqpsgkl stsssalklp naekpplkii
      721 iklsalgdls splkkrhhra dgspqsqsvn geddtssppr kksrtpgnsv sitgeeaahl
      781 hls
//
LOCUS       XP_053911830             313 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase RBBP6-like [Cuculus canorus].
ACCESSION   XP_053911830
VERSION     XP_053911830.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055855.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527859) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 19% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..313
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..313
                     /product="E3 ubiquitin-protein ligase RBBP6-like"
                     /calculated_mol_wt=33874
     Region          4..>266
                     /region_name="COG5222"
                     /note="Uncharacterized conserved protein, contains RING
                     Zn-finger [General function prediction only]"
                     /db_xref="CDD:227547"
     Region          4..76
                     /region_name="DWNN"
                     /note="DWNN domain; pfam08783"
                     /db_xref="CDD:462603"
     CDS             1..313
                     /gene="LOC128850841"
                     /coded_by="XM_054055855.1:1..942"
                     /db_xref="GeneID:128850841"
ORIGIN      
        1 mpcihykffs rlnydtvsfs gldislgdlk hqimsreklk asrcelqisn aqtgeeytde
       61 ntlvprnssv ivrripaagv kvarkrcvpr gteavrgtpk avddssapmt laqlikiadl
      121 agadvpeadk ikammiqssq dydpinyvkt ppspytwlrd gkpghyvrng pdnggrhfgs
      181 vprirkctgi pksflkeved pntkgamlan tgkyvipiln aevyarekkk kppllaveps
      241 ssssdpvpee qlpltpppaa fmavsppaap pgsfwpplal fpassspvmd teflgvqlff
      301 lgglevsssp ltd
//
LOCUS       XP_053911831             336 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase RBBP6-like [Cuculus canorus].
ACCESSION   XP_053911831
VERSION     XP_053911831.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055856.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527859) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..336
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..336
                     /product="E3 ubiquitin-protein ligase RBBP6-like"
                     /calculated_mol_wt=36295
     Region          4..>272
                     /region_name="COG5222"
                     /note="Uncharacterized conserved protein, contains RING
                     Zn-finger [General function prediction only]"
                     /db_xref="CDD:227547"
     Region          4..76
                     /region_name="DWNN"
                     /note="DWNN domain; pfam08783"
                     /db_xref="CDD:462603"
     Region          <236..310
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..336
                     /gene="LOC128850842"
                     /coded_by="XM_054055856.1:1..1011"
                     /db_xref="GeneID:128850842"
ORIGIN      
        1 mpcihykffs rlnydtvsfs gldislgdlk hqimsreklk asrcelqisn aqtgeeytde
       61 ntlvprnssv ivrripaagv kvarkrcvpr gteavrgtpk avddssapmt laqlikiadl
      121 agadvpeadk ikammiqssq dydpinyvkt ppspytwlrd gkpghyvrng pdnggrhfgs
      181 vprirkctgi pksflkeved pntkgamlan tgkyvipiln aevyarekkk kppllaveps
      241 ssssdpvpee qlpltpppaa fmavsppaap gcpvqsqpaa aapvlpgpqg qsmptaahpk
      301 rggkrpsagg radweletkk skldqftnef aeesme
//
LOCUS       XP_053911833             335 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850844 [Cuculus canorus].
ACCESSION   XP_053911833
VERSION     XP_053911833.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055858.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..335
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..335
                     /product="uncharacterized protein LOC128850844"
                     /calculated_mol_wt=36655
     CDS             1..335
                     /gene="LOC128850844"
                     /coded_by="XM_054055858.1:420..1427"
                     /db_xref="GeneID:128850844"
ORIGIN      
        1 mcllsiteng evsvcsgqgr ldrgpsslga eltlllptgl ipkdyrslkt qylqsygpeh
       61 lltfhnlkri gllteqsaae tltavesrvs klvtdraaae sqpsapgelg aqpcpagscc
      121 sragwkhaak vdtagtelra gqsfgpweqq gwqersqmhl ilwperaifq learswgwyv
      181 lvellpcpra rwcqsssghs vqaghpqrht rhraraavav gwqrdtreqr gsrmaerfqn
      241 gkglwewqrg sgvpegfgng kgvqgwqrgl grarrfrggr kipecqrgsg iaegfggarg
      301 sqgwqegsgm legfwdargv cgwhrglgma drfqg
//
LOCUS       XP_053911834             212 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850845 [Cuculus canorus].
ACCESSION   XP_053911834
VERSION     XP_053911834.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055859.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..212
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..212
                     /product="uncharacterized protein LOC128850845"
                     /calculated_mol_wt=22731
     Region          <45..>111
                     /region_name="NP-I"
                     /note="nucleoside phosphorylase-I family; cl00303"
                     /db_xref="CDD:444819"
     CDS             1..212
                     /gene="LOC128850845"
                     /coded_by="XM_054055859.1:154..792"
                     /db_xref="GeneID:128850845"
ORIGIN      
        1 mirfllwpil alglslqsdp dgritgksqy rslpavrrww rsaaglepgs vvitrqcggt
       61 pfkpqfeevv lgktvlrstn ldeqlakelm qcgkeigrfd tvigntrctl dcsgarsgap
      121 sketallarq rpyphpgtaa gtshlllllq elgdqmggfg csslplqilp aaklseelgw
      181 aaslhthrpf lvclllslsi arefsgasgs ha
//
LOCUS       XP_053911835             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14J1-like [Cuculus canorus].
ACCESSION   XP_053911835
VERSION     XP_053911835.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055860.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14J1-like"
                     /calculated_mol_wt=34834
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850846"
                     /coded_by="XM_054055860.1:25..981"
                     /db_xref="GeneID:128850846"
ORIGIN      
        1 msnsssitqf lllaftdtre lqllhfwlfl siylaallgn gliittiace hrlhtpmyff
       61 llnlsildlg sistivpksm anslwstrai shtgcasqvf lflffiaaey slltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flsallhtan tfslplcqgn aveqffceip
      181 qilklscshs ylreagisvf gaclvfgcfv fivvsyvqif savlripseq grhkafstcl
      241 phlavvslfi stagfaylkp rsisspsldl vvsvlysvvp palnpliysl rnqqlkdavw
      301 klitgwfsqa mncsspsa
//
LOCUS       XP_053911837            1009 aa            linear   VRT 09-MAR-2023
DEFINITION  mitochondrial enolase superfamily member 1 [Cuculus canorus].
ACCESSION   XP_053911837
VERSION     XP_053911837.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055862.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1009
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1009
                     /product="mitochondrial enolase superfamily member 1"
                     /calculated_mol_wt=113961
     Region          151..172
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(156,158,160,162..163,166..167,171,186,188,191..192,
                     195,220,222,224,226..227,230..231,234)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          215..234
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          263..303
                     /region_name="SANT"
                     /note="'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains.
                     Tandem copies of the domain bind telomeric DNA tandem
                     repeatsas part of the capping complex. Binding is sequence
                     dependent for repeats which contain the G/C rich motif
                     [C2-3 A (CA)1-6]. The domain is...; cd00167"
                     /db_xref="CDD:238096"
     Region          559..825
                     /region_name="RT_nLTR_like"
                     /note="RT_nLTR: Non-LTR (long terminal repeat)
                     retrotransposon and non-LTR retrovirus reverse
                     transcriptase (RT). This subfamily contains both non-LTR
                     retrotransposons and non-LTR retrovirus RTs. RTs catalyze
                     the conversion of single-stranded RNA into...; cd01650"
                     /db_xref="CDD:238827"
     Site            order(647..652,706..707,745,747..748,821..822)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:238827"
     Site            order(647..652,706,747)
                     /site_type="other"
                     /note="putative NTP binding site [chemical binding]"
                     /db_xref="CDD:238827"
     Site            707
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:238827"
     CDS             1..1009
                     /gene="ENOSF1"
                     /coded_by="XM_054055862.1:487..3516"
                     /db_xref="GeneID:128850849"
ORIGIN      
        1 miwtmgrqtr mhfmsvatqt yygdwrkvkv nviesdhnpp idveweisgl efvnsglkee
       61 gyqpfigvsd laafpdvyea lktpdlvgnv nspvltvvee reeerederq sshgevaeln
      121 papstsmsgs ctelsadgip vvkvpdkqpt cpscgalfvk vsgliehlkr ahgkdkiwfe
      181 cvkcgrqnvk yhsivchypk cpgrievves ddfvcgeckr sfsskiglsq hkrlahpalr
      241 neerienslp kestrrgvhr scwtdeevel llkwerqfeg ekninkliae kipsksakqi
      301 sdkrrclskq keklkgkdle evshdiegeh paksegglnl glrdiykril tewvsagkit
      361 tfnqtysdll egrehhmssi teatmtylas lgkvsgelea smregtrkat kqlssrkhsk
      421 gwmkrraakk gkfyrfqrlf yrdrvklaei ildgreslkc eipldevhdv fksrwesqgt
      481 hrglgvfksq gmadnsvflt mitereiskn ikemkknaap gpdglrrrdi escdpqfkdl
      541 meiynlwlvs gkvpdvvkec rtilipkstn aerlndinnw rpitigstil rlftkiltar
      601 ltkacplnpr qrgfirsagc aenlkllqli iknakrehha lgvvfidlek afdsvshehl
      661 iealenrgve ehiitlikdl yrnvttsvei ksgksesiki nigvkqgdpm spllfnlsid
      721 pllcrleekg hgfkhgsrci tslafaddlv llseswegmv enikileafc sltglktqgi
      781 kcqgfyispt kdsytinncp vweingtplr midpeksgky lgleinpwvg iskpelekdl
      841 sewldrigka slkplqkvdi lkgyaiprmi ykadqaevka sclealdlmi rsnvkewlhl
      901 ppctcdaily srsrdgglgi nrlsaiipsi qarrlhrlaq ssdeairefv kkcsgkiesv
      961 emdnfvceec krgvgskigl sqhkrlahpa irneerikes lpkestpkg
//
LOCUS       XP_053911838             308 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911838
VERSION     XP_053911838.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055863.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..308
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..308
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=33966
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..308
                     /gene="LOC128850850"
                     /coded_by="XM_054055863.1:1..927"
                     /db_xref="GeneID:128850850"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn glifttiacd hhlhtpmyff
       61 llnlsvldlg sisttvpksm anslwdnrii shsgcvsqvf llvffisaey flltvmsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flnallhtan tfslplcqgn aveqffceip
      181 qilklscshs flreiwlldv svclcfgcfv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvslfa stagfaylkp pstsspsldl vvavlysvvp palnpliysl rnqqlkdavw
      301 klitglvl
//
LOCUS       XP_053911840             361 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850851 [Cuculus canorus].
ACCESSION   XP_053911840
VERSION     XP_053911840.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055865.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 14% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..361
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..361
                     /product="uncharacterized protein LOC128850851"
                     /calculated_mol_wt=39478
     Region          117..>168
                     /region_name="ASH"
                     /note="Abnormal spindle-like microcephaly-assoc'd,
                     ASPM-SPD-2-Hydin; pfam15780"
                     /db_xref="CDD:464865"
     Region          <188..>247
                     /region_name="Sec1"
                     /note="Sec1 family; cl15415"
                     /db_xref="CDD:472804"
     CDS             1..361
                     /gene="LOC128850851"
                     /coded_by="XM_054055865.1:2311..3396"
                     /db_xref="GeneID:128850851"
ORIGIN      
        1 mqknswasfr lkvvqvfaea ydigldinvs agrearlplh ikvegigppl cfsfeqldig
       61 nvfagsahsy evilfnkgai dapfssipps talgscftfl pwkgiissdg lqviktsfss
      121 tilgtfteef rfrvngssep vplairgcvi gpafpfdvps lhfgdvsfal legfdiwest
      181 sfieehidrq vspieslrlm cllsitengl ipkdyrslkt qylqsygpeh lltfhklkri
      241 gllteqsaae tltavesras klvtdraaae sqpsapwgag stalpcwell lqsrmearsk
      301 sghcghrats raelwpigaa glaglllvlf wspelwfkfi flttaitnsa rmmeamieak
      361 a
//
LOCUS       XP_053911841             220 aa            linear   VRT 09-MAR-2023
DEFINITION  2-acylglycerol O-acyltransferase 3-like [Cuculus canorus].
ACCESSION   XP_053911841
VERSION     XP_053911841.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055866.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..220
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..220
                     /product="2-acylglycerol O-acyltransferase 3-like"
                     /calculated_mol_wt=24359
     Region          36..>220
                     /region_name="LPLAT"
                     /note="Lysophospholipid acyltransferases (LPLATs) of
                     glycerophospholipid biosynthesis; cl17185"
                     /db_xref="CDD:473073"
     Site            order(102,105,110,141..144,190..192)
                     /site_type="active"
                     /note="putative acyl-acceptor binding pocket [active]"
                     /db_xref="CDD:153249"
     CDS             1..220
                     /gene="LOC128850852"
                     /coded_by="XM_054055866.1:1..663"
                     /db_xref="GeneID:128850852"
ORIGIN      
        1 mgakdwvral cvmqwmftfl clgpasilll llllrtrfwl lpsiygawwl wdwggaergp
       61 rhwdwvrnwr iwdhfcdyfp irvirsaplp pgrsylfaah phgiacigvf gafitggrga
      121 tgtpkpslgd tdmggpcpgl rptlaaltgl fhlpfyreya laaglcpvsq rcldrvleqk
      181 dqalvimvgg aaealegtpg shrvtlsqrm gfvklamrhg
//
LOCUS       XP_053911842             155 aa            linear   VRT 09-MAR-2023
DEFINITION  A-kinase anchor protein 13-like [Cuculus canorus].
ACCESSION   XP_053911842
VERSION     XP_053911842.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055867.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 33% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..155
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..155
                     /product="A-kinase anchor protein 13-like"
                     /calculated_mol_wt=17794
     Region          7..>71
                     /region_name="PRK12704"
                     /note="phosphodiesterase; Provisional"
                     /db_xref="CDD:237177"
     CDS             1..155
                     /gene="LOC128850853"
                     /coded_by="XM_054055867.1:110..577"
                     /db_xref="GeneID:128850853"
ORIGIN      
        1 msksspekrk kereawekel mekearlaqr eqqlrrwwed lererkelqk ekasfqlegq
       61 sqtsslqkkv arvpsqsgva easkekspar pqqghveset svsprsksll ralkekspfr
      121 spgrsktmdq aaeeqpgcqt assvqpkprg rrrrr
//
LOCUS       XP_053911843             256 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850855 [Cuculus canorus].
ACCESSION   XP_053911843
VERSION     XP_053911843.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055868.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 13% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..256
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..256
                     /product="uncharacterized protein LOC128850855"
                     /calculated_mol_wt=28440
     CDS             1..256
                     /gene="LOC128850855"
                     /coded_by="XM_054055868.1:1227..1997"
                     /db_xref="GeneID:128850855"
ORIGIN      
        1 mcllsimeng lipkdyrslk tqylqsygpe hlltfhnlkr igllteqsaa etltavesrv
       61 sklvtdraaa esqpsapgel gaqpcpagsc csragwkhaa kvdtagtelr agqsfgpweq
      121 qgwqersqmh lilwperaif qlearswgwy vlvellpcpr arwcrsssgh svqaghpqrh
      181 prhraraava vgwqretreq rgsrmaetfq ngkglwewqr gsgvpegfgn gfkfifptta
      241 iansarmmea mieaka
//
LOCUS       XP_053911844             185 aa            linear   VRT 09-MAR-2023
DEFINITION  acrosin-like, partial [Cuculus canorus].
ACCESSION   XP_053911844
VERSION     XP_053911844.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055869.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the amino end.
FEATURES             Location/Qualifiers
     source          1..185
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         <1..185
                     /product="acrosin-like"
     Region          1..>157
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cl21584"
                     /db_xref="CDD:473915"
     CDS             1..185
                     /gene="LOC128850856"
                     /coded_by="XM_054055869.1:<1..558"
                     /db_xref="GeneID:128850856"
ORIGIN      
        1 wivsvqkvwe thishvcggs lihpqwvlta ahcfmphkls sfhgkqears cwvapartsa
       61 psqpslhlps rnvpawrvva gttsltdmgp etqlryirhi ivhqgydntt qandislmel
      121 yeplqcspyv qltcvpdfsl rlwelrncsv ssggvttatc efpksisilg aswepwaggl
      181 gvrtl
//
LOCUS       XP_053911845             322 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911845
VERSION     XP_053911845.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055870.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 17% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..322
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..322
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=35855
     Region          2..>34
                     /region_name="PRK12704"
                     /note="phosphodiesterase; Provisional"
                     /db_xref="CDD:237177"
     Region          43..307
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          43..65
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          72..98
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(94,97..98,110..115,117..118,121,166,168..172,208,
                     211..213,215..217,219..220,265,268..269,271..272,275,
                     281..282,284..286,289,292..293)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          110..140
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          152..173
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          208..238
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          245..275
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          282..307
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..322
                     /gene="LOC128850857"
                     /coded_by="XM_054055870.1:1..969"
                     /db_xref="GeneID:128850857"
ORIGIN      
        1 mekearlaqr eqqlrrwwed lererkelqk ekasfqlegq sqlflgiyla allgngliit
       61 tiacdhhlht pmyffllnls vidlgsistt lpksmasslw strgisylgc atqiffylff
      121 ataeyslltv msydryvaic kplhygtllg sracvhmaaa awgagflyal lhtanifslp
      181 lcqgnavehf fceiphilkl scsdaalrev wllvvsvlvg lgcfvfivvs yvqifssvlr
      241 ipseqgqhka lstclphlav vslflstamf aylkppsiss psldlavavl ysvlppalnp
      301 lfyslrneql kdavwklisd sf
//
LOCUS       XP_053911847             159 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A2-like, partial [Cuculus canorus].
ACCESSION   XP_053911847
VERSION     XP_053911847.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055872.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 3% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the amino end.
FEATURES             Location/Qualifiers
     source          1..159
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         <1..159
                     /product="olfactory receptor 14A2-like"
     Region          <1..143
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          14..30
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          68..91
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          110..132
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..159
                     /gene="LOC128850858"
                     /coded_by="XM_054055872.1:<1..480"
                     /db_xref="GeneID:128850858"
ORIGIN      
        1 lhygtllgsr acvhmaaaaw gagflyallh tantfslplc qgnaveqffc eipsdssssp
       61 ahtstvrevg llvlsaclfl gcfvfivvsy vqifravlri pseqgrhkaf smclphlavv
      121 slfistagfa ylkppstssp aldlvvsvly svvpprpav
//
LOCUS       XP_053911848             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911848
VERSION     XP_053911848.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055873.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 4% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=34986
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850859"
                     /coded_by="XM_054055873.1:1..957"
                     /db_xref="GeneID:128850859"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 llnlsvldlg sisttvpksm vnslwdkrti sysgcvsqvf lfalfivaef slltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flyallhtan tfslplcqgn aveqffceip
      181 qfiklscshf yvrevglldv saclffgcfv fivvsyvqif ravlripseq grhkafsmsl
      241 phlavvslfi ttgafahlkp psissppldi lvsvlysvvp palnpliysl rnqqlkdavw
      301 klipgrlsea mscsspaa
//
LOCUS       XP_053911849             310 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911849
VERSION     XP_053911849.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055874.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..310
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..310
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=34093
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..310
                     /gene="LOC128850860"
                     /coded_by="XM_054055874.1:10..942"
                     /db_xref="GeneID:128850860"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfclfl giylavllgn gliittiacd hhlhtpmyff
       61 llnlsvidlg sisttvpksm anslwdtrti sysgcvsqvf llvffisaey flltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag fltallhtan tfslplcqgn aveqffceip
      181 qilklscshs ylrevglldv sacllfgcfv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvslfv stagfaylkp psisstsldl vvsvlysvvp palnpliysl rnqqlkdavr
      301 elmtgffrqg
//
LOCUS       XP_053911850             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911850
VERSION     XP_053911850.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055875.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=34954
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850861"
                     /coded_by="XM_054055875.1:1..957"
                     /db_xref="GeneID:128850861"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaaflgn glifttiacd hhfhtpmyff
       61 llnlsildlg sistivpksm anslwstrai shtgcasqvf lflffiaaey slltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag fldallhtan tfslplcqgn avdqffceip
      181 qilklscshs ylreagisvf vvclvfgcfi filvsyvqif ravlripseq gqhkafsmcl
      241 phlaavsllm stgafaylkp psisspsldl vvsvlysvvp palnpfiysl rnqqlkdavw
      301 klisgwvsea inypscsa
//
LOCUS       XP_053911851             305 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14J1-like [Cuculus canorus].
ACCESSION   XP_053911851
VERSION     XP_053911851.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055876.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="olfactory receptor 14J1-like"
                     /calculated_mol_wt=33389
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..305
                     /gene="LOC128850862"
                     /coded_by="XM_054055876.1:1..918"
                     /db_xref="GeneID:128850862"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliitiivnd nhhhtpmyff
       61 llnlalldlg sisttvpksm anslsntrai sylgcvaqvf fvlllfgaey slltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flhallhtan tfslplcqgn aveqffceip
      181 qilklscshs ylreagisvf avclafvcfv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvslfv stagfaylkp lsisspsldl vvsviysvvp palnpliysl rnkelkdavw
      301 klisg
//
LOCUS       XP_053911852             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911852
VERSION     XP_053911852.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055877.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=35029
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850863"
                     /coded_by="XM_054055877.1:7..963"
                     /db_xref="GeneID:128850863"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 llnlsvidlg sisttvpksi anslwdkrti sysgcvsqvf lfaffivaef slltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag fltallhtas tfslplcqgn aveqffceip
      181 qilklscshs dlrevwlldv cacllfgcfv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvslfv stayfaylkp psisspsldl vvsvlysvip palnpliysl rnqqlkdavw
      301 klisgwfsia mncsspsa
//
LOCUS       XP_053911853             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911853
VERSION     XP_053911853.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055878.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=35097
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850864"
                     /coded_by="XM_054055878.1:16..972"
                     /db_xref="GeneID:128850864"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 llnlsvldlg sisttvpksm anslwdnrti shsgcvsqvf llvffisaey flltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flyallhtan tfslplcqgn aveqffceip
      181 qilklscshs direvglldv naflgfncfv fivvsyvqif rvilripseq grhkafstcl
      241 phlavvslfi staafaylkp psissppldl vvsvlysvvp palnpliysl rnqqlkdavw
      301 klitgwfsea mnclspsa
//
LOCUS       XP_053911855             633 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: uncharacterized protein LOC104055006 [Cuculus
            canorus].
ACCESSION   XP_053911855
VERSION     XP_053911855.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055880.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 50% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..633
                     /product="LOW QUALITY PROTEIN: uncharacterized protein
                     LOC104055006"
                     /calculated_mol_wt=68888
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..633
                     /gene="LOC104055006"
                     /coded_by="XM_054055880.1:1..1902"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon"
                     /db_xref="GeneID:104055006"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 llnlsvidlg sisttvpksm anslwdnrii shsrcvsqvf llvffisaey slltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flhallhtan tfslplcqgn aveqffceip
      181 qilklscshs dlrevglldv tacllfgcfv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvslfv stgtfaylkp psnsstsldl vvsvlysvvp palnpliysl rnqqlkdavw
      301 klitgwfssn ellitffiav isnhgrprpa svecravaql paevklflvr pgqsvpsall
      361 gkqvhktplq savaarspgf rvdnggchvy lapqrmmava rsirhrgrsp glarskgghq
      421 vsptpeqmva larsswlwrq spappgsggs hqvllvpgqm vvvarstqlq rrspglacvq
      481 erspglvgsk vegdghqiyl slelvdksrq lqgrspglpg sggghrvllv pdwtlavags
      541 iwlwgrspgl pssssgcqvy lvpkdvgpll wsnggghhvy lapgarprsr kfqgrlsglp
      601 gsrensgsrr vysdrgavar pmwlqefvrc trl
//
LOCUS       XP_009569998             312 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 10AG1 [Cuculus canorus].
ACCESSION   XP_009569998
VERSION     XP_009569998.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009571703.2
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009569998.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..312
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..312
                     /product="olfactory receptor 10AG1"
                     /calculated_mol_wt=35522
     Region          32..305
                     /region_name="7tmA_OR10A-like"
                     /note="olfactory receptor subfamily 10A and related
                     proteins, member of the class A family of
                     seven-transmembrane G protein-coupled receptors; cd15225"
                     /db_xref="CDD:320353"
     Region          32..56
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320353"
     Region          63..89
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320353"
     Site            order(85,88..89,101..106,108..109,112,157,159..163,199,
                     202..204,206..208,210..211,256,259..260,262..263,266,
                     272..273,275..277,280,283..284)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320353"
     Region          101..131
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320353"
     Region          144..165
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320353"
     Region          199..229
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320353"
     Region          236..266
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320353"
     Region          273..298
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320353"
     CDS             1..312
                     /gene="LOC104068780"
                     /coded_by="XM_009571703.2:1..939"
                     /db_xref="GeneID:104068780"
ORIGIN      
        1 mlhrkgleny ttrpeflllg fsyndnlqdl rftiflliyf milignsviv litvvdpslh
       61 spmyfflrnl sfleicytsv tlpkmlvafl tedgrisflg caaqlyflvs vgsteslllt
      121 amaydryvai cdplhyprim ngglcvrlvv gswvavapvq vgqtyqvftl tfcashnlhh
      181 ffcdippllq lvcadtfwnq vtlhtvvmlf avfpfalivf sytqivraml kmpsalgrrk
      241 afatcsshlv vvtlfyssvt vvyfkqwsrd sadtdrylal fytvvtpmvn pviyslrnre
      301 vrialqrllc rk
//
LOCUS       XP_053911856             211 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14J1-like [Cuculus canorus].
ACCESSION   XP_053911856
VERSION     XP_053911856.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055881.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 26% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..211
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..211
                     /product="olfactory receptor 14J1-like"
                     /calculated_mol_wt=23283
     Region          <1..176
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          26..42
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          79..102
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          121..143
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          152..176
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..211
                     /gene="LOC128850866"
                     /coded_by="XM_054055881.1:1..636"
                     /db_xref="GeneID:128850866"
ORIGIN      
        1 msydryiaic kplhygtllg sracvhmaaa awaagflnal lhtvnifslp lcqgnavdqf
       61 fceipqilkl scshsylred gpldvsaclc fgcfvfivvs yvqifravmr iaseqgrhka
      121 fstclphlav vslfvstgaf aylkppsiss ptlvlvlsvl ysvvppklna fiycfrmirq
      181 tslsapltat statpikfhy wsfhnycdke h
//
LOCUS       XP_053911858             305 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14J1-like [Cuculus canorus].
ACCESSION   XP_053911858
VERSION     XP_053911858.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055883.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="olfactory receptor 14J1-like"
                     /calculated_mol_wt=33506
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..305
                     /gene="LOC128850867"
                     /coded_by="XM_054055883.1:1..918"
                     /db_xref="GeneID:128850867"
ORIGIN      
        1 msnsssitqf lllafadrre lqllhfwlfl giylaallgn gliittitcd hrlhtpmyff
       61 llnlslldlg sisptvpkam anslwdtrti sytgcvaqlf tflffitael slltvmsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flnallqtan tfslplcqgn aldqffceip
      181 qilklscshs ylreaglsml svclgfgcfv fivvsyvqif ravlripseq gqyktfstcl
      241 phlavvslli stagfaylkp lsvssssldl vvsvlyvvvp palnpliysl rnqqlkdavw
      301 klisg
//
LOCUS       XP_009568666             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14J1 [Cuculus canorus].
ACCESSION   XP_009568666
VERSION     XP_009568666.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009570371.2
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009568666.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14J1"
                     /calculated_mol_wt=35058
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC104067600"
                     /coded_by="XM_009570371.2:1..957"
                     /db_xref="GeneID:104067600"
ORIGIN      
        1 msnsssttqf lllafadrre lqllhfwlfl giylaallgn gliittiice hhlhtpmyff
       61 llnlsildlg sisttvtksm anslwdtrti symgcvaqvf flfflisaey slltvmsydr
      121 yvaickplhy etllgsraci hmaaaawgag flngllhman tfslplcqgn avdqffceip
      181 hilklscshs ymrevgllvv tvlaglaffv fivvsyvqif rsvlripseq grhkafstcl
      241 phlavvslfl stgtfaylkp psisspsldl vvavlysvvp palnpviysl rnqqlkdavw
      301 klisgcvsee incsscsa
//
LOCUS       XP_053911859             312 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 10AG1-like [Cuculus canorus].
ACCESSION   XP_053911859
VERSION     XP_053911859.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055884.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..312
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..312
                     /product="olfactory receptor 10AG1-like"
                     /calculated_mol_wt=35536
     Region          32..305
                     /region_name="7tmA_OR10A-like"
                     /note="olfactory receptor subfamily 10A and related
                     proteins, member of the class A family of
                     seven-transmembrane G protein-coupled receptors; cd15225"
                     /db_xref="CDD:320353"
     Region          32..56
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320353"
     Region          63..89
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320353"
     Site            order(85,88..89,101..106,108..109,112,157,159..163,199,
                     202..204,206..208,210..211,256,259..260,262..263,266,
                     272..273,275..277,280,283..284)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320353"
     Region          101..131
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320353"
     Region          144..165
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320353"
     Region          199..229
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320353"
     Region          236..266
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320353"
     Region          273..298
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320353"
     CDS             1..312
                     /gene="LOC128850868"
                     /coded_by="XM_054055884.1:1..939"
                     /db_xref="GeneID:128850868"
ORIGIN      
        1 mlhrkgleny ttrpeflllg fsyndnlqdl rftiflliyf milignsliv litvvdpslh
       61 spmyfflrnl sfleicytsv tlpkmlvafl tedgrisflg caaqlyflvs vgsteslllt
      121 amaydryvai cdplhyprim ngglcvrlvv gswvavapvq vgqtyqvftl tfcashnlhh
      181 ffcdippllq lvcadtfwnq vtlhtvvmlf avfpfalivf sytqivraml kmpsalgrrk
      241 afatcsshlv vvtlfyssvt vvyfkqwsrd sadtdrylal fytvvtpmvn pviyslrnre
      301 vrialqrllc rk
//
LOCUS       XP_053911860             346 aa            linear   VRT 09-MAR-2023
DEFINITION  acrosin-like [Cuculus canorus].
ACCESSION   XP_053911860
VERSION     XP_053911860.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055885.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 44% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..346
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..346
                     /product="acrosin-like"
                     /calculated_mol_wt=37875
     Region          <2..169
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            order(118,145,147)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     Region          <277..>340
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cl21584"
                     /db_xref="CDD:473915"
     CDS             1..346
                     /gene="LOC128850869"
                     /coded_by="XM_054055885.1:344..1384"
                     /db_xref="GeneID:128850869"
ORIGIN      
        1 mgpetqhsyv rqiiihddyd tttqakdial melheplqct pyvqlacvpd fslqlrqlrn
       61 cyvggwgvtt arsgglppsl qeakvplidl qvcnssgwyh gdihphnlca gypqggidtc
      121 qgdsggplvc qdphadhfwl vgvtsfgvgc ararrpgiya stqyfrqwil tqmampssea
      181 aaataeshfs telnpiealq pvpirplagd svgplvcqdp hadhfwlvgv tsfgvgcara
      241 rqpgvyastq yfrqwiliqm adgdaligsm aqnvpawhvv aginnlaqeg pevqvgyvrr
      301 ildhkgynni tmandislme lheplqsspy vqracvpdfs lrlwel
//
LOCUS       XP_053911861             360 aa            linear   VRT 09-MAR-2023
DEFINITION  acrosin-like [Cuculus canorus].
ACCESSION   XP_053911861
VERSION     XP_053911861.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055886.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 47% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..360
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..360
                     /product="acrosin-like"
                     /calculated_mol_wt=39549
     Region          <2..169
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            order(118,145,147)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..360
                     /gene="LOC128850870"
                     /coded_by="XM_054055886.1:175..1257"
                     /db_xref="GeneID:128850870"
ORIGIN      
        1 mgpetqhsyv rqiiihddyd tttqakdial melheplqct pyvqlacvpd fslqlrqlrn
       61 cyvggwgvtt arsgglppsl qeakvplidl qvcnssgwyh gdihphnlca gypqggidtc
      121 qgdsggplvc qdphadhfwl vgvtsfgvgc ararrpgiya stqyfrqwil tqmampssea
      181 aaataeshfs telnpiealq pvpirplagd svgplvcqdp hadhfwlvgv tsfgvgcara
      241 rqpgvyastq yfrqwiliqm ampsseawhs rlcqspsagg ihlhthfqnw mltqitrhsv
      301 raanetehaw shiptpsnsv eapqttepsy fssclkalnk lldfftqlqe flrvlkggst
//
LOCUS       XP_053911862             309 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911862
VERSION     XP_053911862.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055887.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..309
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..309
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=34344
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..309
                     /gene="LOC128850871"
                     /coded_by="XM_054055887.1:1..930"
                     /db_xref="GeneID:128850871"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn glifttiacd hhlhtpmyff
       61 llnlsvldlg sisttvpksm anslwdnrti sysgciaqtf lyvffisaey clltfmsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flnalmhtan tfslplcqgn aveqffceip
      181 qilklscshs yvrdvalidv iaclcfgcfv fivvsyvqif ravlripfeq grhktfstcl
      241 phlavvslfi stsffaylkp psisspsldl vvsvlysvvp palnpliysl rnqqlkdavs
      301 rmllyivse
//
LOCUS       XP_053911863             321 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911863
VERSION     XP_053911863.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055888.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 3% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..321
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..321
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=35489
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..321
                     /gene="LOC128850872"
                     /coded_by="XM_054055888.1:133..1098"
                     /db_xref="GeneID:128850872"
ORIGIN      
        1 msnsssitqf lllaftdtre lqllhfwlfl giylaallgn gliittiacd yhfytpmyff
       61 llnlsvldlg sisttvpkam snflwntrai syqgcvaqvf lfifllgaey flltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flnallhtan tfslplcqgn aveqffceip
      181 qilklscshs dlrevgllvf saclffgcfv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvslfl stgmfanlkp psisspsldl vvsllysvvp pavnpliysl rnqqlkdavw
      301 klmsgffsiv icpsssayhs q
//
LOCUS       XP_053911865             314 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911865
VERSION     XP_053911865.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055890.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..314
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..314
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=34835
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..314
                     /gene="LOC128850874"
                     /coded_by="XM_054055890.1:16..960"
                     /db_xref="GeneID:128850874"
ORIGIN      
        1 msnnssitqf lllafahtre lqllhfwlfl giylaalmgn gliittiacd hhlhtpmyff
       61 llnlsvldlg fisttvpksm anslwdnkni sykgcvaqvf lyvffvsady slltimcydr
      121 yvaickplhy gtllgsracv hmaaaawgag flhallhtan tfslplcqgn aveqffceip
      181 qfiklscshs dlgevglldf svclffgcfv fivvsyvqif ravlripseq grhkafsmcl
      241 phlavvslfi staafaylkp psissppldl vvsvlysvvp palnpliysl rnqqlkdavw
      301 klitgwfset mncs
//
LOCUS       XP_053911866             161 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like, partial [Cuculus canorus].
ACCESSION   XP_053911866
VERSION     XP_053911866.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055891.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 4% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the amino end.
FEATURES             Location/Qualifiers
     source          1..161
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         <1..161
                     /product="olfactory receptor 14A16-like"
     Region          <1..154
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          14..30
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          67..90
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          109..131
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..161
                     /gene="LOC128850875"
                     /coded_by="XM_054055891.1:<1..486"
                     /db_xref="GeneID:128850875"
ORIGIN      
        1 lhygtllgsr acvhmaadaw gagflhallh tantfslplc qgnaveqffc eiphilklsc
       61 shsyirevgf itvsafvafg cfvfivvsyv hifkavlrip seqgqhkafs tclphlavvs
      121 lfistgvfay lkppsissps ldlvvsflys vvppgqwqka k
//
LOCUS       XP_053911868             406 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: hydrocephalus-inducing protein homolog
            [Cuculus canorus].
ACCESSION   XP_053911868
VERSION     XP_053911868.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055893.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 2% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..406
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..406
                     /product="LOW QUALITY PROTEIN: hydrocephalus-inducing
                     protein homolog"
                     /calculated_mol_wt=45854
     CDS             1..406
                     /gene="LOC128850876"
                     /coded_by="XM_054055893.1:1..1221"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /db_xref="GeneID:128850876"
ORIGIN      
        1 mhetsaqfst vdldrslfpp lpsevevvfq syvphevyem plvlrnvdkv pqrlkivmes
       61 slyfkldvps gmcrkvapgm ttsfhilftp eenkdyfhql tciteremfn vpiraigara
      121 ildfpdqlsf sicpvkystq ktllvrnvgn rearycistq spfsvnpsiw nlgigeatqv
      181 tvefhpletg dhsgslvvhy dtgeaihasl ygvavdvnvg lersslkiek tyltlsnrst
      241 vvlrnqseit ahfqwksfas qgkedqeklr lchklqrhne nmdyflldct enpilpgdlp
      301 llsaifkekm sqvqrdpmlf sddvftidpv egdvlpnssi einvifkpqe atvyqkmvyc
      361 dvsgretrlp lciegegiep qlrlsfeqld igkvfvgstn iyevss
//
LOCUS       XP_053911869             216 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850877 [Cuculus canorus].
ACCESSION   XP_053911869
VERSION     XP_053911869.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055894.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..216
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..216
                     /product="uncharacterized protein LOC128850877"
                     /calculated_mol_wt=24508
     CDS             1..216
                     /gene="LOC128850877"
                     /coded_by="XM_054055894.1:22..672"
                     /db_xref="GeneID:128850877"
ORIGIN      
        1 mpamameeke ngssrnveen peyslrhslk ttildvsnil pkikpfytsd ekglfiterk
       61 lgkdsgfndd vprdflnhsn nvgetevenp fanaqqscsr pkgnldedlk qdlerfkskv
      121 gmlqiafrtl ekekaqlqke vgkeksfkte avtkqedvdk litppgnipn kqmkqeltlr
      181 nndgsemene nvveekdkkn fsseekpgli kmstkr
//
LOCUS       XP_053911870             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911870
VERSION     XP_053911870.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055895.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=35095
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850878"
                     /coded_by="XM_054055895.1:13..969"
                     /db_xref="GeneID:128850878"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl siylaallgn gliittiacd hhlhtpmyff
       61 llnlsvldlg sisttvpksm anslwhnrai sysgcvsqvf lfaffisaey flltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flyallhtan tfslplcqgn aveqffceip
      181 qilklscshs dlrevglldv saclffgffv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvslfi staafaylkp psnssrsldl vvsvmysvvp palnpliysl rnqqlkgavw
      301 klipgwfsea mncsspsa
//
LOCUS       XP_053911871             321 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911871
VERSION     XP_053911871.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055896.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 3% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..321
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..321
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=35476
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..321
                     /gene="LOC128850879"
                     /coded_by="XM_054055896.1:1..966"
                     /db_xref="GeneID:128850879"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 llnlsvidlg sisttvpksm anslwhisii sytgcvaqvf lyvffisaey slltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flnallhtan tfslplcqgn aveqffceip
      181 qilklscshs flrevglldv sacllfgcfv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvslfv stgafaylkp ssisspsldl vvsvlysvvp palnpliysl rnqqlkdavw
      301 kliqllnyst flylyseltl v
//
LOCUS       XP_053911872             194 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: uridine phosphorylase 1-like [Cuculus
            canorus].
ACCESSION   XP_053911872
VERSION     XP_053911872.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055897.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 39% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..194
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..194
                     /product="LOW QUALITY PROTEIN: uridine phosphorylase
                     1-like"
                     /calculated_mol_wt=20344
     Region          37..>172
                     /region_name="NP-I"
                     /note="nucleoside phosphorylase-I family; cl00303"
                     /db_xref="CDD:444819"
     CDS             1..194
                     /gene="LOC128850880"
                     /coded_by="XM_054055897.1:1..585"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon"
                     /db_xref="GeneID:128850880"
ORIGIN      
        1 mggaggreed vsssdihvlf dprqlssvvl lpvsccrgfs swlddtklqe tfvcvggnls
       61 rvktfiayva eelglgspgs xagykvgpvl svshgmgips isimshelik llyrakcsnv
      121 ttvcigtsgg iglepgsvvi trqcggtpvk pqfeevvlgk tvlrstnlde qlwksgkika
      181 vmieqmsetp elcp
//
LOCUS       XP_053911873             276 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850881 [Cuculus canorus].
ACCESSION   XP_053911873
VERSION     XP_053911873.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055898.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..276
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..276
                     /product="uncharacterized protein LOC128850881"
                     /calculated_mol_wt=29146
     CDS             1..276
                     /gene="LOC128850881"
                     /coded_by="XM_054055898.1:453..1283"
                     /db_xref="GeneID:128850881"
ORIGIN      
        1 mcllsiteng evsvcsgqgr ldrgpsslga eltlllptgl ipkdyrslkt qylqsygpeh
       61 lltfhklkri gllteqsaae tltavesrvs klvtdraaae sqpsapgelg aqpcpagscc
      121 sragwkhaak vdtagtelra gqsfgpweqq gwqvlllvlf wspelcaslc pavtnpeals
      181 cffsscfpgk itdafnslar ksnfparskk lglvcpcgaa alptcplvpe qlwslcagwa
      241 psethtaqgq sccgsgvaeg yegaegfkng revpew
//
LOCUS       XP_053911874             312 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like, partial [Cuculus canorus].
ACCESSION   XP_053911874
VERSION     XP_053911874.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055899.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 5% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the amino end.
FEATURES             Location/Qualifiers
     source          1..312
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         <1..312
                     /product="olfactory receptor 14A16-like"
     Region          17..286
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          18..44
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          51..77
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(73,76..77,89..94,96..97,100,145,147..151,187,
                     190..192,194..196,198..199,244,247..248,250..251,254,
                     260..261,263..265,268,271..272)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          89..119
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          131..152
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          187..217
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          224..254
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          261..286
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..312
                     /gene="LOC128850882"
                     /coded_by="XM_054055899.1:<1..939"
                     /db_xref="GeneID:128850882"
ORIGIN      
        1 itqflllafa dtrelqllhf wlflgiylaa llgngliitt itcnnqlhtp myffllnlsv
       61 ldlgsisttv pksvdnslwd nmnitysgcv sqvflfaffi vaeyslltvm sydryvaick
      121 plhygtllgs racvhmaaaa wgagfltall htantfslpl cqgnavdqff ceiphilkls
      181 csqsyvreva lidviaclcl gcfvfivvsy vqifravlri pfeqgrrktf stclphlamv
      241 slfistsffa ylkppsissp sldlvvsvly svvppalnpl iyslrnqqlk davwklisgw
      301 asetinflsc st
//
LOCUS       XP_053911876             325 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911876
VERSION     XP_053911876.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055901.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 3% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..325
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..325
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=35778
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..325
                     /gene="LOC128850883"
                     /coded_by="XM_054055901.1:25..1002"
                     /db_xref="GeneID:128850883"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn giiittiacd hhlhtpmyff
       61 llslsildlg sisttvpksm asslwdnrai sysgcvaqlf vfiffigaey clltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flnalmhtan tfslplcqgn aveqffceip
      181 hilklscsqs dlrevwlldv svclffgcfv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvslfy stagfaylkp psisspsrdl vmsvlysvlp palnpliysl rnqqlkdavw
      301 klipgcfsea mscsspsalq lscns
//
LOCUS       XP_053911877             229 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like, partial [Cuculus canorus].
ACCESSION   XP_053911877
VERSION     XP_053911877.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055902.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 9% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the amino end.
FEATURES             Location/Qualifiers
     source          1..229
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         <1..229
                     /product="olfactory receptor 14A16-like"
     Region          1..203
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          26..41
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          52..68
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          105..128
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          147..169
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          178..203
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..229
                     /gene="LOC128850885"
                     /coded_by="XM_054055902.1:<1..690"
                     /db_xref="GeneID:128850885"
ORIGIN      
        1 ylaallgncl ifttiacdhh lhtpmyffll nlsildlasi sttllgsrac vhmaaaawga
       61 gflsallhta ntfslplcqg naveqffcei pqilklscsh selrdvglld isvfllfgcf
      121 vfivvsyvqi fravlripse qgrhkafstc lphlamvslf vstgafaylk tsstsspslh
      181 lvlsvlysvv ppavnpliys lrnqqlkdav wklitgwfsd amnclsssa
//
LOCUS       XP_053911878             201 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14C36-like, partial [Cuculus canorus].
ACCESSION   XP_053911878
VERSION     XP_053911878.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055903.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 22% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the amino end.
FEATURES             Location/Qualifiers
     source          1..201
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         <1..201
                     /product="olfactory receptor 14C36-like"
     Region          <1..165
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          14..30
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          67..90
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          109..131
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          140..165
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..201
                     /gene="LOC128850886"
                     /coded_by="XM_054055903.1:<1..606"
                     /db_xref="GeneID:128850886"
ORIGIN      
        1 lhygtllgsr acvhmaaaaw gagflhallh tantfslplc qgnavdqffc eipqilklsc
       61 sdaalrelgl lvfsvflafg cfvfivvsyv qifrsvlwip skqrrhkafs mclphltvvs
      121 vfvstamfah lkppsissps ldlvvsflys vvppalnplm ysfknqqlkd avwnlimqwf
      181 searkcssss aqqlscnswq t
//
LOCUS       XP_053911879             508 aa            linear   VRT 09-MAR-2023
DEFINITION  protein regulator of cytokinesis 1-like [Cuculus canorus].
ACCESSION   XP_053911879
VERSION     XP_053911879.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055904.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..508
                     /product="protein regulator of cytokinesis 1-like"
                     /calculated_mol_wt=58925
     Region          22..477
                     /region_name="MAP65_ASE1"
                     /note="Microtubule associated protein (MAP65/ASE1 family);
                     pfam03999"
                     /db_xref="CDD:427641"
     CDS             1..508
                     /gene="LOC128850887"
                     /coded_by="XM_054055904.1:117..1643"
                     /db_xref="GeneID:128850887"
ORIGIN      
        1 mrrsdvvaae avsvlngama alrdiweeig ipeemrlerm etvkghikem ldlmvaeees
       61 lkqrllknia lfqkeidrlc melqldpfeg ekentilqmd knlrnrmdvl lqqkaermre
      121 lktlleqdqd lcdllcttpf cidgnavpsl ddldryrqhl aflnaekeqr qeefvsskrq
      181 iillmeeldh tpdtsfeqev vcedeeafcl srdnitalqd llkqleaqrs qneavceelr
      241 sriialwdrl qvpveereas avhmagcgak trkalqleve sleelklqnm kamiqairae
      301 maaywdkcfy sqeqregfap yndenyteal lelheaevgk mktyyethkd lfeavqkwee
      361 nwkmfleler katdpsrftn rggkllkeek qraklqkvls klqaelesrv qaweqehegm
      421 flvkgqqvma yvseqwqlyh lekekekqer qlkkrrqiea emlygstprt pikrrmlgtt
      481 tpgkarklng ssiagatpns tvgsglgk
//
LOCUS       XP_053911880             508 aa            linear   VRT 09-MAR-2023
DEFINITION  protein regulator of cytokinesis 1-like [Cuculus canorus].
ACCESSION   XP_053911880
VERSION     XP_053911880.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055905.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..508
                     /product="protein regulator of cytokinesis 1-like"
                     /calculated_mol_wt=58925
     Region          22..477
                     /region_name="MAP65_ASE1"
                     /note="Microtubule associated protein (MAP65/ASE1 family);
                     pfam03999"
                     /db_xref="CDD:427641"
     CDS             1..508
                     /gene="LOC128850887"
                     /coded_by="XM_054055905.1:117..1643"
                     /db_xref="GeneID:128850887"
ORIGIN      
        1 mrrsdvvaae avsvlngama alrdiweeig ipeemrlerm etvkghikem ldlmvaeees
       61 lkqrllknia lfqkeidrlc melqldpfeg ekentilqmd knlrnrmdvl lqqkaermre
      121 lktlleqdqd lcdllcttpf cidgnavpsl ddldryrqhl aflnaekeqr qeefvsskrq
      181 iillmeeldh tpdtsfeqev vcedeeafcl srdnitalqd llkqleaqrs qneavceelr
      241 sriialwdrl qvpveereas avhmagcgak trkalqleve sleelklqnm kamiqairae
      301 maaywdkcfy sqeqregfap yndenyteal lelheaevgk mktyyethkd lfeavqkwee
      361 nwkmfleler katdpsrftn rggkllkeek qraklqkvls klqaelesrv qaweqehegm
      421 flvkgqqvma yvseqwqlyh lekekekqer qlkkrrqiea emlygstprt pikrrmlgtt
      481 tpgkarklng ssiagatpns tvgsglgk
//
LOCUS       XP_053911881             298 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850888 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911881
VERSION     XP_053911881.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055906.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..298
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..298
                     /product="uncharacterized protein LOC128850888 isoform X1"
                     /calculated_mol_wt=32831
     CDS             1..298
                     /gene="LOC128850888"
                     /coded_by="XM_054055906.1:3936..4832"
                     /db_xref="GeneID:128850888"
ORIGIN      
        1 mcllsiteng evsvcsgqgr ldrgpsslga eltlllptgl ipkdyrslkt qylqsygpeh
       61 lltfhnlkri gllteqsaae tltavesrvs klvtdraaae sqpsapgelg aqpcpagscc
      121 sragwkhaak vdtagtelra gqsfgpweqq gwqersqmhl ilwperaifq learswgwyv
      181 lvellpcpra rwcqsssghs vqaghpqrht rhraraavav gwqretreqr gsrmaetfqn
      241 gkgfwewqrg sgvpegfgkg kavqgwkkds rmpeglrncr gvwgcqresg vagrfrna
//
LOCUS       XP_053911882             298 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850888 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911882
VERSION     XP_053911882.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055907.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..298
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..298
                     /product="uncharacterized protein LOC128850888 isoform X1"
                     /calculated_mol_wt=32831
     CDS             1..298
                     /gene="LOC128850888"
                     /coded_by="XM_054055907.1:2390..3286"
                     /db_xref="GeneID:128850888"
ORIGIN      
        1 mcllsiteng evsvcsgqgr ldrgpsslga eltlllptgl ipkdyrslkt qylqsygpeh
       61 lltfhnlkri gllteqsaae tltavesrvs klvtdraaae sqpsapgelg aqpcpagscc
      121 sragwkhaak vdtagtelra gqsfgpweqq gwqersqmhl ilwperaifq learswgwyv
      181 lvellpcpra rwcqsssghs vqaghpqrht rhraraavav gwqretreqr gsrmaetfqn
      241 gkgfwewqrg sgvpegfgkg kavqgwkkds rmpeglrncr gvwgcqresg vagrfrna
//
LOCUS       XP_053911883             276 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850888 isoform X2 [Cuculus canorus].
ACCESSION   XP_053911883
VERSION     XP_053911883.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055908.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..276
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..276
                     /product="uncharacterized protein LOC128850888 isoform X2"
                     /calculated_mol_wt=29070
     CDS             1..276
                     /gene="LOC128850888"
                     /coded_by="XM_054055908.1:3936..4766"
                     /db_xref="GeneID:128850888"
ORIGIN      
        1 mcllsiteng evsvcsgqgr ldrgpsslga eltlllptgl ipkdyrslkt qylqsygpeh
       61 lltfhnlkri gllteqsaae tltavesrvs klvtdraaae sqpsapgelg aqpcpagscc
      121 sragwkhaak vdtagtelra gqsfgpweqq gwqvlllvlf wspelcaslc pavtnpeals
      181 cffsscfpgk itdafnslar ksnfparskk lglvcpcgaa alptcplvpe qlwslcagwa
      241 psethtaqgq sccgsgvaeg degaegfkng rdvpew
//
LOCUS       XP_053911884             269 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850888 isoform X3 [Cuculus canorus].
ACCESSION   XP_053911884
VERSION     XP_053911884.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055909.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..269
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..269
                     /product="uncharacterized protein LOC128850888 isoform X3"
                     /calculated_mol_wt=29936
     Region          <2..>48
                     /region_name="Sec1"
                     /note="Sec1 family; cl15415"
                     /db_xref="CDD:472804"
     CDS             1..269
                     /gene="LOC128850888"
                     /coded_by="XM_054055909.1:3936..4745"
                     /db_xref="GeneID:128850888"
ORIGIN      
        1 mcllsiteng lipkdyrslk tqylqsygpe hlltfhnlkr igllteqsaa etltavesrv
       61 sklvtdraaa esqpsapgel gaqpcpagsc csragwkhaa kvdtagtelr agqsfgpweq
      121 qgwqersqmh lilwperaif qlearswgwy vlvellpcpr arwcqsssgh svqaghpqrh
      181 trhraraava vgwqretreq rgsrmaetfq ngkgfwewqr gsgvpegfgk gkavqgwkkd
      241 srmpeglrnc rgvwgcqres gvagrfrna
//
LOCUS       XP_053911885             269 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850888 isoform X3 [Cuculus canorus].
ACCESSION   XP_053911885
VERSION     XP_053911885.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055910.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..269
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..269
                     /product="uncharacterized protein LOC128850888 isoform X3"
                     /calculated_mol_wt=29936
     Region          <2..>48
                     /region_name="Sec1"
                     /note="Sec1 family; cl15415"
                     /db_xref="CDD:472804"
     CDS             1..269
                     /gene="LOC128850888"
                     /coded_by="XM_054055910.1:3676..4485"
                     /db_xref="GeneID:128850888"
ORIGIN      
        1 mcllsiteng lipkdyrslk tqylqsygpe hlltfhnlkr igllteqsaa etltavesrv
       61 sklvtdraaa esqpsapgel gaqpcpagsc csragwkhaa kvdtagtelr agqsfgpweq
      121 qgwqersqmh lilwperaif qlearswgwy vlvellpcpr arwcqsssgh svqaghpqrh
      181 trhraraava vgwqretreq rgsrmaetfq ngkgfwewqr gsgvpegfgk gkavqgwkkd
      241 srmpeglrnc rgvwgcqres gvagrfrna
//
LOCUS       XP_053911886             269 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850888 isoform X3 [Cuculus canorus].
ACCESSION   XP_053911886
VERSION     XP_053911886.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055911.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..269
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..269
                     /product="uncharacterized protein LOC128850888 isoform X3"
                     /calculated_mol_wt=29936
     Region          <2..>48
                     /region_name="Sec1"
                     /note="Sec1 family; cl15415"
                     /db_xref="CDD:472804"
     CDS             1..269
                     /gene="LOC128850888"
                     /coded_by="XM_054055911.1:3667..4476"
                     /db_xref="GeneID:128850888"
ORIGIN      
        1 mcllsiteng lipkdyrslk tqylqsygpe hlltfhnlkr igllteqsaa etltavesrv
       61 sklvtdraaa esqpsapgel gaqpcpagsc csragwkhaa kvdtagtelr agqsfgpweq
      121 qgwqersqmh lilwperaif qlearswgwy vlvellpcpr arwcqsssgh svqaghpqrh
      181 trhraraava vgwqretreq rgsrmaetfq ngkgfwewqr gsgvpegfgk gkavqgwkkd
      241 srmpeglrnc rgvwgcqres gvagrfrna
//
LOCUS       XP_053911888             269 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850888 isoform X3 [Cuculus canorus].
ACCESSION   XP_053911888
VERSION     XP_053911888.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055913.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..269
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..269
                     /product="uncharacterized protein LOC128850888 isoform X3"
                     /calculated_mol_wt=29936
     Region          <2..>48
                     /region_name="Sec1"
                     /note="Sec1 family; cl15415"
                     /db_xref="CDD:472804"
     CDS             1..269
                     /gene="LOC128850888"
                     /coded_by="XM_054055913.1:2390..3199"
                     /db_xref="GeneID:128850888"
ORIGIN      
        1 mcllsiteng lipkdyrslk tqylqsygpe hlltfhnlkr igllteqsaa etltavesrv
       61 sklvtdraaa esqpsapgel gaqpcpagsc csragwkhaa kvdtagtelr agqsfgpweq
      121 qgwqersqmh lilwperaif qlearswgwy vlvellpcpr arwcqsssgh svqaghpqrh
      181 trhraraava vgwqretreq rgsrmaetfq ngkgfwewqr gsgvpegfgk gkavqgwkkd
      241 srmpeglrnc rgvwgcqres gvagrfrna
//
LOCUS       XP_053911889             244 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850888 isoform X4 [Cuculus canorus].
ACCESSION   XP_053911889
VERSION     XP_053911889.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055914.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..244
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..244
                     /product="uncharacterized protein LOC128850888 isoform X4"
                     /calculated_mol_wt=26095
     CDS             1..244
                     /gene="LOC128850888"
                     /coded_by="XM_054055914.1:3936..4670"
                     /db_xref="GeneID:128850888"
ORIGIN      
        1 mcllsiteng evsvcsgqgr ldrgpsslga eltlllptgl ipkdyrslkt qylqsygpeh
       61 lltfhnlkri gllteqsaae tltavesrvs klvtdraaae sqpsapgelg aqpcpagscc
      121 sragwkhaak vdtagtelra gqsfgpweqq gwqersqmhl ilwperaifq learswgwdt
      181 yhksptalph gavglsptal pdgsaswccg avsrgsppgf kfiflttait nsarmmeami
      241 eaka
//
LOCUS       XP_053911890             391 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911890
VERSION     XP_053911890.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055915.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..391
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..391
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=42704
     Region          96..365
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          97..123
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          130..156
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(152,155..156,168..173,175..176,179,224,226..230,266,
                     269..271,273..275,277..278,323,326..327,329..330,333,
                     339..340,342..344,347,350..351)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          168..198
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          210..231
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          266..296
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          303..333
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          340..365
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..391
                     /gene="LOC128850889"
                     /coded_by="XM_054055915.1:11..1186"
                     /db_xref="GeneID:128850889"
ORIGIN      
        1 mtlqdrsvsp qlregtsgma sgcfsavpws prdtwreprg greraalgcs saaelgwapg
       61 tegagvphaq rqqmsnsssi tqflllafah trelqllhfw lflgiylaal lgngliitti
      121 acdhhlhtpm yffllnlsvl dlgsisttvp ksmanslwdn rtisysgcvs qvflfaffis
      181 aeyslltims ydryvaickp lhygtllgsr acvhmaaaaw gagfltallh tantfslplc
      241 qgnaveqffc eipqilklsc shsylreagi svfgaclvfg cfvfivvsyv qifsavlrip
      301 seqrrhkafs mclphlavvs lfistagfay lkprsissps ldlvvsvlys vvppalnpli
      361 yslrnqqlkd avwklisgwv seaincssys t
//
LOCUS       XP_053911891             309 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911891
VERSION     XP_053911891.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055916.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..309
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..309
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=34294
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..309
                     /gene="LOC128850890"
                     /coded_by="XM_054055916.1:16..945"
                     /db_xref="GeneID:128850890"
ORIGIN      
        1 msnsssitqf lllafahtre lqllhfwlfl giylaallgn glifttiacd hhlhtpmyff
       61 llnlsvldlg sisttvpksm anslwdnrni sytgcvaqif lyvffssady slltimsydr
      121 yiaickplhy gtllgsracv hmaaaawgag flysllhtan ifslplcqgn aveqffceip
      181 qilklscshs dlrevgllda saclyfgcfi fivvsyvqif ravlripseq gqhkafstcl
      241 phlavvslfv stagfaylkp lstsspsldv lvsvlysvip palnpliysl rnqqlkdavw
      301 klitrwfse
//
LOCUS       XP_053911892             305 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911892
VERSION     XP_053911892.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055917.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=33436
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..305
                     /gene="LOC128850891"
                     /coded_by="XM_054055917.1:25..942"
                     /db_xref="GeneID:128850891"
ORIGIN      
        1 msnsssitqf lllafadtwe lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 llnlsvldlg sisttvpksm anslwdnrai sysgcvsqvf lfaffisaef slltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flnallhtan tfslplcqgn avkqffceip
      181 hilklscsda avrevgllvv gvclclgcfv fivvsyvqif ravlripseq grhkafstcl
      241 phmavvslfi stgmfaylkp psisspsldi vvsflysvmp palnpliysl rnqqlkdavw
      301 klisg
//
LOCUS       XP_053911894             241 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase Topors-like isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053911894
VERSION     XP_053911894.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055919.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..241
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..241
                     /product="E3 ubiquitin-protein ligase Topors-like isoform
                     X1"
                     /calculated_mol_wt=25971
     Region          <72..194
                     /region_name="PRK04537"
                     /note="ATP-dependent RNA helicase RhlB; Provisional"
                     /db_xref="CDD:235307"
     Region          191..240
                     /region_name="RING_Ubox"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; cl17238"
                     /db_xref="CDD:473075"
     Site            order(192,195,208,210,213,216,227,230)
                     /site_type="other"
                     /note="cross-brace motif"
                     /db_xref="CDD:438111"
     CDS             1..241
                     /gene="LOC128850892"
                     /coded_by="XM_054055919.1:1205..1930"
                     /db_xref="GeneID:128850892"
ORIGIN      
        1 mevreklmgv pikspcrilt crtargksnv svpsmptvfr dqlrlckmpl slrhvmgcav
       61 paavgllgcw wiysrikrrr vcpdqratgp rteqqeevag eesspepaag vprrlprlle
      121 eerpenenag gfsapcqpqa avaprglqla aaedpasgte gasaerssaa rdggrsqrpq
      181 agpveaaegs qcpiclqgvt nasyvayclh sfcfgciqrw atmsktcpic rqplerllis
      241 v
//
LOCUS       XP_053911895             241 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase Topors-like isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053911895
VERSION     XP_053911895.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055920.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..241
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..241
                     /product="E3 ubiquitin-protein ligase Topors-like isoform
                     X1"
                     /calculated_mol_wt=25971
     Region          <72..194
                     /region_name="PRK04537"
                     /note="ATP-dependent RNA helicase RhlB; Provisional"
                     /db_xref="CDD:235307"
     Region          191..240
                     /region_name="RING_Ubox"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; cl17238"
                     /db_xref="CDD:473075"
     Site            order(192,195,208,210,213,216,227,230)
                     /site_type="other"
                     /note="cross-brace motif"
                     /db_xref="CDD:438111"
     CDS             1..241
                     /gene="LOC128850892"
                     /coded_by="XM_054055920.1:1082..1807"
                     /db_xref="GeneID:128850892"
ORIGIN      
        1 mevreklmgv pikspcrilt crtargksnv svpsmptvfr dqlrlckmpl slrhvmgcav
       61 paavgllgcw wiysrikrrr vcpdqratgp rteqqeevag eesspepaag vprrlprlle
      121 eerpenenag gfsapcqpqa avaprglqla aaedpasgte gasaerssaa rdggrsqrpq
      181 agpveaaegs qcpiclqgvt nasyvayclh sfcfgciqrw atmsktcpic rqplerllis
      241 v
//
LOCUS       XP_053911896             241 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase Topors-like isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053911896
VERSION     XP_053911896.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055921.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..241
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..241
                     /product="E3 ubiquitin-protein ligase Topors-like isoform
                     X1"
                     /calculated_mol_wt=25971
     Region          <72..194
                     /region_name="PRK04537"
                     /note="ATP-dependent RNA helicase RhlB; Provisional"
                     /db_xref="CDD:235307"
     Region          191..240
                     /region_name="RING_Ubox"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; cl17238"
                     /db_xref="CDD:473075"
     Site            order(192,195,208,210,213,216,227,230)
                     /site_type="other"
                     /note="cross-brace motif"
                     /db_xref="CDD:438111"
     CDS             1..241
                     /gene="LOC128850892"
                     /coded_by="XM_054055921.1:621..1346"
                     /db_xref="GeneID:128850892"
ORIGIN      
        1 mevreklmgv pikspcrilt crtargksnv svpsmptvfr dqlrlckmpl slrhvmgcav
       61 paavgllgcw wiysrikrrr vcpdqratgp rteqqeevag eesspepaag vprrlprlle
      121 eerpenenag gfsapcqpqa avaprglqla aaedpasgte gasaerssaa rdggrsqrpq
      181 agpveaaegs qcpiclqgvt nasyvayclh sfcfgciqrw atmsktcpic rqplerllis
      241 v
//
LOCUS       XP_053911897             241 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase Topors-like isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053911897
VERSION     XP_053911897.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055922.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..241
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..241
                     /product="E3 ubiquitin-protein ligase Topors-like isoform
                     X1"
                     /calculated_mol_wt=25971
     Region          <72..194
                     /region_name="PRK04537"
                     /note="ATP-dependent RNA helicase RhlB; Provisional"
                     /db_xref="CDD:235307"
     Region          191..240
                     /region_name="RING_Ubox"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; cl17238"
                     /db_xref="CDD:473075"
     Site            order(192,195,208,210,213,216,227,230)
                     /site_type="other"
                     /note="cross-brace motif"
                     /db_xref="CDD:438111"
     CDS             1..241
                     /gene="LOC128850892"
                     /coded_by="XM_054055922.1:622..1347"
                     /db_xref="GeneID:128850892"
ORIGIN      
        1 mevreklmgv pikspcrilt crtargksnv svpsmptvfr dqlrlckmpl slrhvmgcav
       61 paavgllgcw wiysrikrrr vcpdqratgp rteqqeevag eesspepaag vprrlprlle
      121 eerpenenag gfsapcqpqa avaprglqla aaedpasgte gasaerssaa rdggrsqrpq
      181 agpveaaegs qcpiclqgvt nasyvayclh sfcfgciqrw atmsktcpic rqplerllis
      241 v
//
LOCUS       XP_053911898             241 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase Topors-like isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053911898
VERSION     XP_053911898.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055923.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..241
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..241
                     /product="E3 ubiquitin-protein ligase Topors-like isoform
                     X1"
                     /calculated_mol_wt=25971
     Region          <72..194
                     /region_name="PRK04537"
                     /note="ATP-dependent RNA helicase RhlB; Provisional"
                     /db_xref="CDD:235307"
     Region          191..240
                     /region_name="RING_Ubox"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; cl17238"
                     /db_xref="CDD:473075"
     Site            order(192,195,208,210,213,216,227,230)
                     /site_type="other"
                     /note="cross-brace motif"
                     /db_xref="CDD:438111"
     CDS             1..241
                     /gene="LOC128850892"
                     /coded_by="XM_054055923.1:1252..1977"
                     /db_xref="GeneID:128850892"
ORIGIN      
        1 mevreklmgv pikspcrilt crtargksnv svpsmptvfr dqlrlckmpl slrhvmgcav
       61 paavgllgcw wiysrikrrr vcpdqratgp rteqqeevag eesspepaag vprrlprlle
      121 eerpenenag gfsapcqpqa avaprglqla aaedpasgte gasaerssaa rdggrsqrpq
      181 agpveaaegs qcpiclqgvt nasyvayclh sfcfgciqrw atmsktcpic rqplerllis
      241 v
//
LOCUS       XP_053911899             241 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase Topors-like isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053911899
VERSION     XP_053911899.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055924.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..241
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..241
                     /product="E3 ubiquitin-protein ligase Topors-like isoform
                     X2"
                     /calculated_mol_wt=25986
     Region          191..238
                     /region_name="RING_Ubox"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; cl17238"
                     /db_xref="CDD:473075"
     Site            order(192,195,208,210,213,216,227,230)
                     /site_type="other"
                     /note="cross-brace motif"
                     /db_xref="CDD:438111"
     CDS             1..241
                     /gene="LOC128850892"
                     /coded_by="XM_054055924.1:1152..1877"
                     /db_xref="GeneID:128850892"
ORIGIN      
        1 mrsreklmgv pikspcrilt crtargksnv svpsmptvfr dqlrlckmpl slrhvmgcav
       61 paavgllgcw wiysrikrrr vcpdqratgp rteqqeevag eesspepaag vprrlprlle
      121 eerpenenag gfsapcqpqa avaprglqla aaedpasgte gasaerssaa rdggrsqrpq
      181 agpveaaegs qcpiclqgvt nasyvayclh sfcfgciqrw atmsktcpic rqplerllis
      241 v
//
LOCUS       XP_053911900             240 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase Topors-like isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053911900
VERSION     XP_053911900.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055925.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..240
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..240
                     /product="E3 ubiquitin-protein ligase Topors-like isoform
                     X3"
                     /calculated_mol_wt=25857
     Region          <71..193
                     /region_name="PRK04537"
                     /note="ATP-dependent RNA helicase RhlB; Provisional"
                     /db_xref="CDD:235307"
     Region          190..239
                     /region_name="RING_Ubox"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; cl17238"
                     /db_xref="CDD:473075"
     Site            order(191,194,207,209,212,215,226,229)
                     /site_type="other"
                     /note="cross-brace motif"
                     /db_xref="CDD:438111"
     CDS             1..240
                     /gene="LOC128850892"
                     /coded_by="XM_054055925.1:1217..1939"
                     /db_xref="GeneID:128850892"
ORIGIN      
        1 mnreklmgvp ikspcriltc rtargksnvs vpsmptvfrd qlrlckmpls lrhvmgcavp
       61 aavgllgcww iysrikrrrv cpdqratgpr teqqeevage esspepaagv prrlprllee
      121 erpenenagg fsapcqpqaa vaprglqlaa aedpasgteg asaerssaar dggrsqrpqa
      181 gpveaaegsq cpiclqgvtn asyvayclhs fcfgciqrwa tmsktcpicr qplerllisv
//
LOCUS       XP_053911901             234 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase Topors-like isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053911901
VERSION     XP_053911901.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055926.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..234
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..234
                     /product="E3 ubiquitin-protein ligase Topors-like isoform
                     X4"
                     /calculated_mol_wt=25085
     Region          <65..187
                     /region_name="PRK04537"
                     /note="ATP-dependent RNA helicase RhlB; Provisional"
                     /db_xref="CDD:235307"
     Region          184..231
                     /region_name="RING_Ubox"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; cl17238"
                     /db_xref="CDD:473075"
     Site            order(185,188,201,203,206,209,220,223)
                     /site_type="other"
                     /note="cross-brace motif"
                     /db_xref="CDD:438111"
     CDS             1..234
                     /gene="LOC128850892"
                     /coded_by="XM_054055926.1:1042..1746"
                     /db_xref="GeneID:128850892"
ORIGIN      
        1 mgvpikspcr iltcrtargk snvsvpsmpt vfrdqlrlck mplslrhvmg cavpaavgll
       61 gcwwiysrik rrrvcpdqra tgprteqqee vageesspep aagvprrlpr lleeerpene
      121 naggfsapcq pqaavaprgl qlaaaedpas gtegasaers saardggrsq rpqagpveaa
      181 egsqcpiclq gvtnasyvay clhsfcfgci qrwatmsktc picrqplerl lisv
//
LOCUS       XP_053911902             305 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911902
VERSION     XP_053911902.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055927.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=33489
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..305
                     /gene="LOC128850893"
                     /coded_by="XM_054055927.1:10..927"
                     /db_xref="GeneID:128850893"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 llnlsvldlg sistivpksm anslwdnrii shsgcvsqvf llvffisaey slltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flnallhtan tfslplcqgn aveqffceip
      181 qilklscsrs nirevglldv sacllfgcfv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvslfv stgtfaylkp psnsstsldl vvsvlysvlp palnpliysl rnqqlkdavw
      301 klisg
//
LOCUS       XP_053911903             714 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 36-like [Cuculus canorus].
ACCESSION   XP_053911903
VERSION     XP_053911903.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055928.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..714
                     /product="ubiquitin carboxyl-terminal hydrolase 36-like"
                     /calculated_mol_wt=79916
     Region          107..407
                     /region_name="Peptidase_C19E"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02661"
                     /db_xref="CDD:239126"
     Site            order(112,117,368,385)
                     /site_type="active"
                     /db_xref="CDD:239126"
     Region          <427..>666
                     /region_name="rad2"
                     /note="DNA excision repair protein (rad2); TIGR00600"
                     /db_xref="CDD:273166"
     CDS             1..714
                     /gene="LOC128850894"
                     /coded_by="XM_054055928.1:29..2173"
                     /db_xref="GeneID:128850894"
ORIGIN      
        1 mdnatleelv aqtadqeaqa lfqaleplek dgaekeqhlk qlreemnskl dhqeqepllq
       61 qmknwppsma maikekleqa hgipmpknml fpmerlslkw qqtywigagl qnlgntcfln
      121 atlqcltytp planyllsre hsrtcqqsef cmlctmenhi lqvfgssgst iepvsfirdl
      181 kkiakhirfg rqedaheflc fiidamqrac lnvysqldrq sqtttlvhqi fggflrsrvr
      241 ckacnspsdt yepfldlave ieeaesieka lnlfvrpeml ceenaymcdk cktkvraskr
      301 lsiqqasnvl tvslkrfsyf hggkitkgvt ypefldirpy msenegdpvq yqlyavlvhs
      361 gtschsghyy syvkasdgqw ylmnddivrc tninvvlkqq ayvlfylrtp stgkrlqgpi
      421 akavsipasq pvmgqkpemq paeklsgqee vgvsvprttf nmgpnlanvm lppklpqdvp
      481 ssfkikhsir kghsalpyda aqrpkslphl pqghrifqqy ktsktseake eltlgsffet
      541 kkphtsfktq epkqhlsvvl gavpavpdsc slvnlkrsll tavkrsssts pppakklals
      601 akkgstpeav srddhhtqpq pqlpeqiqpm dttlppdsts qlsgklstss sapklpnpek
      661 pplkiiiels tiqflishlk krrhgadgss rsqsvdgkdd tsspprkkrc tqge
//
LOCUS       XP_053911904             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911904
VERSION     XP_053911904.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055929.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=34996
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850895"
                     /coded_by="XM_054055929.1:7..963"
                     /db_xref="GeneID:128850895"
ORIGIN      
        1 msnsssitqf lllafadtre lqllnfwlfl giylaallgn gliittitcd hhlhtpmyff
       61 llnlsvidlg sisttvpksm akslwdnrti shsgcvsqvf llvfflsaey flltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flyallhtan tfslplcqgn aveqffceip
      181 qilklscshs dlrevglldv svclcfgcfv fivvsyvqtf nvvlripseq grhkafstcl
      241 phlavvslfi staafaylkp psissppldl vvsvlysvvp palnpliysl rnqqlkdavw
      301 klitgwfsea mnclspsa
//
LOCUS       XP_053911905             428 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein J1-B-like [Cuculus canorus].
ACCESSION   XP_053911905
VERSION     XP_053911905.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055930.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..428
                     /product="forkhead box protein J1-B-like"
                     /calculated_mol_wt=47094
     Region          <122..324
                     /region_name="COG5025"
                     /note="Transcription factor of the Forkhead/HNF3 family
                     [Transcription]"
                     /db_xref="CDD:227358"
     Region          123..201
                     /region_name="FH_FOXJ1"
                     /note="Forkhead (FH) domain found in Forkhead box protein
                     J1 (FOXJ1) and similar proteins; cd20023"
                     /db_xref="CDD:410797"
     Site            order(128,146..147,150,169..170,172..173,176,183,193..195,
                     197)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410797"
     CDS             1..428
                     /gene="LOC128850896"
                     /coded_by="XM_054055930.1:199..1485"
                     /db_xref="GeneID:128850896"
ORIGIN      
        1 maegrlsheq agkdrgqegi vrdsphkdds lpnltwlldf sipsasmgns sccpsgpdph
       61 tcqgmpssav prsplgtdpa cvgtphtpcv pvssstskte hrvvsmhaql vesidyknnp
      121 fikppysyat licmamease ephitlsaiy kwitdnfcyf rqadpgwqns irqnlssnkc
      181 fikvprekgk pgrggfwkld pqyadqlksg afkkqrmcpv qihpasteka qqeaqvdasl
      241 atsgcaskkv fsvsmesqql leefeefirn qnqnpaevka glkrkqplpk qmakvrrlsn
      301 salltqeeqt qlgslkwdtd anlnrefsts gdlevtppvs pkkhnlevmv hgqhvdcpqg
      361 leqvlaesnq nnlsldetcm aasflqhlfd egtsesfcnt vsveqlfdin disvpadgrd
      421 wsslasll
//
LOCUS       XP_053911906             745 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 36-like [Cuculus canorus].
ACCESSION   XP_053911906
VERSION     XP_053911906.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055931.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..745
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..745
                     /product="ubiquitin carboxyl-terminal hydrolase 36-like"
                     /calculated_mol_wt=83238
     Region          <13..>94
                     /region_name="sbcc"
                     /note="exonuclease SbcC; TIGR00618"
                     /db_xref="CDD:129705"
     Region          138..438
                     /region_name="Peptidase_C19E"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02661"
                     /db_xref="CDD:239126"
     Site            order(143,148,399,416)
                     /site_type="active"
                     /db_xref="CDD:239126"
     Region          <458..>701
                     /region_name="rad2"
                     /note="DNA excision repair protein (rad2); TIGR00600"
                     /db_xref="CDD:273166"
     CDS             1..745
                     /gene="LOC128850897"
                     /coded_by="XM_054055931.1:408..2645"
                     /db_xref="GeneID:128850897"
ORIGIN      
        1 meakparapv slarstlqtr qvlnelqeqq rmdnatleel vaqtadqeaq alfqdleple
       61 kdgaekeqhl kqlreemnsk ldhqeqepll qqmkncppsm amaikekleq ahgipmpknm
      121 lfpmerlslk wqqtywigag lqnlgntcfl natlqcltyt pplanyllsr ehsrtcqqse
      181 fcmlctmenh vlqvfgssgs tiepvsfird lkkiakhirf grqedahefl cfiidamqra
      241 clnvysqldq qsqtttlvhq ifggflrsrv rckacnspsd tyepfldlav eieeaesiek
      301 alnlfvrpem lceenaymcd kcktkvrask rlsiqqasnv ltvslkrfsy fhggkitkgv
      361 typefldirp ymsenegdpv qyqlyavlvh sgtschsghy ysyvkasdgq wylmnddivr
      421 ctninvvlkq qayvlfylrt pstgkrlqgp iakavsipas qpvmgqkaem qpaeklsgqe
      481 evgvsvprtt fnmgpnlanv mlppklpqdv pfsfkikhsi rkghsalpyd aaqrpkslph
      541 lpqghrifqq yktsktseak eeltlgsffe tkkpltsfkt qepkqhlsvv lgavpavpds
      601 cslvnlkrsl ltavkrssst spppakklal sakkgstpea vsrddhhtqp qpqlpgqiqp
      661 mdttlppdst sqlsgklsts ssvpklpnpe kpplkiiies stiqflishl kkrrhgadgs
      721 srsqsvdgkd dtsspprkks ctqge
//
LOCUS       XP_053911907             241 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase Topors-like isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053911907
VERSION     XP_053911907.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055932.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..241
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..241
                     /product="E3 ubiquitin-protein ligase Topors-like isoform
                     X1"
                     /calculated_mol_wt=26041
     Region          191..240
                     /region_name="RING_Ubox"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; cl17238"
                     /db_xref="CDD:473075"
     Site            order(192,195,208,210,213,216,227,230)
                     /site_type="other"
                     /note="cross-brace motif"
                     /db_xref="CDD:438111"
     CDS             1..241
                     /gene="LOC128850898"
                     /coded_by="XM_054055932.1:178..903"
                     /db_xref="GeneID:128850898"
ORIGIN      
        1 mevreklmgv pikspcrilt crtargksnv svpsmptvfr dqlrlckmpl slrhimgcav
       61 paavgllgcw wiysrrkrrr vcpdqratgp rteqqeevag eessprpaag vprrlprlle
      121 eerpenenag gfsapcqpqa avaprglqla aaedpasgte gasaerssaa rdggrsqrpq
      181 agpveaaegs qcpiclqgvt nasyvayclh sfcfgciqrw atmsktcpvc rqplerllis
      241 v
//
LOCUS       XP_053911908             241 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase Topors-like isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053911908
VERSION     XP_053911908.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055933.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..241
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..241
                     /product="E3 ubiquitin-protein ligase Topors-like isoform
                     X2"
                     /calculated_mol_wt=26056
     Region          191..238
                     /region_name="RING_Ubox"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; cl17238"
                     /db_xref="CDD:473075"
     Site            order(192,195,208,210,213,216,227,230)
                     /site_type="other"
                     /note="cross-brace motif"
                     /db_xref="CDD:438111"
     CDS             1..241
                     /gene="LOC128850898"
                     /coded_by="XM_054055933.1:122..847"
                     /db_xref="GeneID:128850898"
ORIGIN      
        1 mrsreklmgv pikspcrilt crtargksnv svpsmptvfr dqlrlckmpl slrhimgcav
       61 paavgllgcw wiysrrkrrr vcpdqratgp rteqqeevag eessprpaag vprrlprlle
      121 eerpenenag gfsapcqpqa avaprglqla aaedpasgte gasaerssaa rdggrsqrpq
      181 agpveaaegs qcpiclqgvt nasyvayclh sfcfgciqrw atmsktcpvc rqplerllis
      241 v
//
LOCUS       XP_053911909             310 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911909
VERSION     XP_053911909.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055934.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..310
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..310
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=34796
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..310
                     /gene="LOC128850899"
                     /coded_by="XM_054055934.1:1..933"
                     /db_xref="GeneID:128850899"
ORIGIN      
        1 msnsssitqf lllaftdtre lqllhfwlfl giylaallgn gliiitivcd yhfytpmyff
       61 llnlsvldlg sisttvpkam snflwntrai syqgcvaqvf lfifllgaey flltimsydr
      121 yvaickplhy gtllgsracv hmaaaawgag flyallhtan tfslplcqgn aveqffceip
      181 qilklscshs flremwlldv saclffvffv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvslfl stgmfanlkp psissppldl vvsvlysvvp palnpliysl rnqqlkdavw
      301 klmsgffkhr
//
LOCUS       XP_053911910             431 aa            linear   VRT 09-MAR-2023
DEFINITION  cell division cycle protein 20 homolog [Cuculus canorus].
ACCESSION   XP_053911910
VERSION     XP_053911910.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055935.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..431
                     /product="cell division cycle protein 20 homolog"
                     /calculated_mol_wt=47661
     Region          120..157
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <130..403
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          162..199
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          205..240
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          245..286
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          293..331
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          336..372
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..431
                     /gene="LOC128850901"
                     /coded_by="XM_054055935.1:16..1311"
                     /db_xref="GeneID:128850901"
ORIGIN      
        1 mqrtqriagp dryiasrsal dvdvakfllt rqkdpaevsp akkerqrara vilngfdvee
       61 akilglsgkd qstvagfqnn lkalyrhqvm pgsirrkgrr ilsaadrild apdirddyyl
      121 tlldwstqnl lalaldttvy lwdhttdeti nlmeteyaag yvssvswgng gdclavgtsn
      181 gevqlwdikr qkrlrtltsh vsrvgclswn syilssgsrs glihhhdvrv aehhvatlag
      241 htrevcglkw sldghylasg gddhvvniwp siqgghggfa pvqtfrqhqg avkalawcpw
      301 qssilatggg tsdkrirlwn vcsgsclsnv darsqvssil wstnykelis ghgenqlviw
      361 kypamskvtk lrghtgrvls malspdgetv asvagdetlr lwrcfqmdpi mkkekekanr
      421 vissilhqai r
//
LOCUS       XP_053911911             431 aa            linear   VRT 09-MAR-2023
DEFINITION  cell division cycle protein 20 homolog [Cuculus canorus].
ACCESSION   XP_053911911
VERSION     XP_053911911.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055936.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..431
                     /product="cell division cycle protein 20 homolog"
                     /calculated_mol_wt=47661
     Region          120..157
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <130..403
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          162..199
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          205..240
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          245..286
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          293..331
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          336..372
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..431
                     /gene="LOC128850901"
                     /coded_by="XM_054055936.1:16..1311"
                     /db_xref="GeneID:128850901"
ORIGIN      
        1 mqrtqriagp dryiasrsal dvdvakfllt rqkdpaevsp akkerqrara vilngfdvee
       61 akilglsgkd qstvagfqnn lkalyrhqvm pgsirrkgrr ilsaadrild apdirddyyl
      121 tlldwstqnl lalaldttvy lwdhttdeti nlmeteyaag yvssvswgng gdclavgtsn
      181 gevqlwdikr qkrlrtltsh vsrvgclswn syilssgsrs glihhhdvrv aehhvatlag
      241 htrevcglkw sldghylasg gddhvvniwp siqgghggfa pvqtfrqhqg avkalawcpw
      301 qssilatggg tsdkrirlwn vcsgsclsnv darsqvssil wstnykelis ghgenqlviw
      361 kypamskvtk lrghtgrvls malspdgetv asvagdetlr lwrcfqmdpi mkkekekanr
      421 vissilhqai r
//
LOCUS       XP_053911912             431 aa            linear   VRT 09-MAR-2023
DEFINITION  cell division cycle protein 20 homolog [Cuculus canorus].
ACCESSION   XP_053911912
VERSION     XP_053911912.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055937.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..431
                     /product="cell division cycle protein 20 homolog"
                     /calculated_mol_wt=47661
     Region          120..157
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <130..403
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          162..199
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          205..240
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          245..286
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          293..331
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          336..372
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..431
                     /gene="LOC128850901"
                     /coded_by="XM_054055937.1:16..1311"
                     /db_xref="GeneID:128850901"
ORIGIN      
        1 mqrtqriagp dryiasrsal dvdvakfllt rqkdpaevsp akkerqrara vilngfdvee
       61 akilglsgkd qstvagfqnn lkalyrhqvm pgsirrkgrr ilsaadrild apdirddyyl
      121 tlldwstqnl lalaldttvy lwdhttdeti nlmeteyaag yvssvswgng gdclavgtsn
      181 gevqlwdikr qkrlrtltsh vsrvgclswn syilssgsrs glihhhdvrv aehhvatlag
      241 htrevcglkw sldghylasg gddhvvniwp siqgghggfa pvqtfrqhqg avkalawcpw
      301 qssilatggg tsdkrirlwn vcsgsclsnv darsqvssil wstnykelis ghgenqlviw
      361 kypamskvtk lrghtgrvls malspdgetv asvagdetlr lwrcfqmdpi mkkekekanr
      421 vissilhqai r
//
LOCUS       XP_053911914             431 aa            linear   VRT 09-MAR-2023
DEFINITION  cell division cycle protein 20 homolog [Cuculus canorus].
ACCESSION   XP_053911914
VERSION     XP_053911914.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055939.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..431
                     /product="cell division cycle protein 20 homolog"
                     /calculated_mol_wt=47661
     Region          120..157
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <130..403
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          162..199
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          205..240
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          245..286
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          293..331
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          336..372
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..431
                     /gene="LOC128850901"
                     /coded_by="XM_054055939.1:16..1311"
                     /db_xref="GeneID:128850901"
ORIGIN      
        1 mqrtqriagp dryiasrsal dvdvakfllt rqkdpaevsp akkerqrara vilngfdvee
       61 akilglsgkd qstvagfqnn lkalyrhqvm pgsirrkgrr ilsaadrild apdirddyyl
      121 tlldwstqnl lalaldttvy lwdhttdeti nlmeteyaag yvssvswgng gdclavgtsn
      181 gevqlwdikr qkrlrtltsh vsrvgclswn syilssgsrs glihhhdvrv aehhvatlag
      241 htrevcglkw sldghylasg gddhvvniwp siqgghggfa pvqtfrqhqg avkalawcpw
      301 qssilatggg tsdkrirlwn vcsgsclsnv darsqvssil wstnykelis ghgenqlviw
      361 kypamskvtk lrghtgrvls malspdgetv asvagdetlr lwrcfqmdpi mkkekekanr
      421 vissilhqai r
//
LOCUS       XP_053911915             431 aa            linear   VRT 09-MAR-2023
DEFINITION  cell division cycle protein 20 homolog [Cuculus canorus].
ACCESSION   XP_053911915
VERSION     XP_053911915.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055940.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..431
                     /product="cell division cycle protein 20 homolog"
                     /calculated_mol_wt=47661
     Region          120..157
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <130..403
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          162..199
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          205..240
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          245..286
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          293..331
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          336..372
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..431
                     /gene="LOC128850901"
                     /coded_by="XM_054055940.1:16..1311"
                     /db_xref="GeneID:128850901"
ORIGIN      
        1 mqrtqriagp dryiasrsal dvdvakfllt rqkdpaevsp akkerqrara vilngfdvee
       61 akilglsgkd qstvagfqnn lkalyrhqvm pgsirrkgrr ilsaadrild apdirddyyl
      121 tlldwstqnl lalaldttvy lwdhttdeti nlmeteyaag yvssvswgng gdclavgtsn
      181 gevqlwdikr qkrlrtltsh vsrvgclswn syilssgsrs glihhhdvrv aehhvatlag
      241 htrevcglkw sldghylasg gddhvvniwp siqgghggfa pvqtfrqhqg avkalawcpw
      301 qssilatggg tsdkrirlwn vcsgsclsnv darsqvssil wstnykelis ghgenqlviw
      361 kypamskvtk lrghtgrvls malspdgetv asvagdetlr lwrcfqmdpi mkkekekanr
      421 vissilhqai r
//
LOCUS       XP_053911916             431 aa            linear   VRT 09-MAR-2023
DEFINITION  cell division cycle protein 20 homolog [Cuculus canorus].
ACCESSION   XP_053911916
VERSION     XP_053911916.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055941.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..431
                     /product="cell division cycle protein 20 homolog"
                     /calculated_mol_wt=47661
     Region          120..157
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <130..403
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          162..199
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          205..240
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          245..286
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          293..331
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          336..372
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..431
                     /gene="LOC128850901"
                     /coded_by="XM_054055941.1:16..1311"
                     /db_xref="GeneID:128850901"
ORIGIN      
        1 mqrtqriagp dryiasrsal dvdvakfllt rqkdpaevsp akkerqrara vilngfdvee
       61 akilglsgkd qstvagfqnn lkalyrhqvm pgsirrkgrr ilsaadrild apdirddyyl
      121 tlldwstqnl lalaldttvy lwdhttdeti nlmeteyaag yvssvswgng gdclavgtsn
      181 gevqlwdikr qkrlrtltsh vsrvgclswn syilssgsrs glihhhdvrv aehhvatlag
      241 htrevcglkw sldghylasg gddhvvniwp siqgghggfa pvqtfrqhqg avkalawcpw
      301 qssilatggg tsdkrirlwn vcsgsclsnv darsqvssil wstnykelis ghgenqlviw
      361 kypamskvtk lrghtgrvls malspdgetv asvagdetlr lwrcfqmdpi mkkekekanr
      421 vissilhqai r
//
LOCUS       XP_053911917             431 aa            linear   VRT 09-MAR-2023
DEFINITION  cell division cycle protein 20 homolog [Cuculus canorus].
ACCESSION   XP_053911917
VERSION     XP_053911917.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055942.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..431
                     /product="cell division cycle protein 20 homolog"
                     /calculated_mol_wt=47661
     Region          120..157
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <130..403
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          162..199
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          205..240
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          245..286
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          293..331
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          336..372
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..431
                     /gene="LOC128850901"
                     /coded_by="XM_054055942.1:16..1311"
                     /db_xref="GeneID:128850901"
ORIGIN      
        1 mqrtqriagp dryiasrsal dvdvakfllt rqkdpaevsp akkerqrara vilngfdvee
       61 akilglsgkd qstvagfqnn lkalyrhqvm pgsirrkgrr ilsaadrild apdirddyyl
      121 tlldwstqnl lalaldttvy lwdhttdeti nlmeteyaag yvssvswgng gdclavgtsn
      181 gevqlwdikr qkrlrtltsh vsrvgclswn syilssgsrs glihhhdvrv aehhvatlag
      241 htrevcglkw sldghylasg gddhvvniwp siqgghggfa pvqtfrqhqg avkalawcpw
      301 qssilatggg tsdkrirlwn vcsgsclsnv darsqvssil wstnykelis ghgenqlviw
      361 kypamskvtk lrghtgrvls malspdgetv asvagdetlr lwrcfqmdpi mkkekekanr
      421 vissilhqai r
//
LOCUS       XP_053911918             431 aa            linear   VRT 09-MAR-2023
DEFINITION  cell division cycle protein 20 homolog [Cuculus canorus].
ACCESSION   XP_053911918
VERSION     XP_053911918.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055943.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..431
                     /product="cell division cycle protein 20 homolog"
                     /calculated_mol_wt=47661
     Region          120..157
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <130..403
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          162..199
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          205..240
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          245..286
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          293..331
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          336..372
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..431
                     /gene="LOC128850901"
                     /coded_by="XM_054055943.1:16..1311"
                     /db_xref="GeneID:128850901"
ORIGIN      
        1 mqrtqriagp dryiasrsal dvdvakfllt rqkdpaevsp akkerqrara vilngfdvee
       61 akilglsgkd qstvagfqnn lkalyrhqvm pgsirrkgrr ilsaadrild apdirddyyl
      121 tlldwstqnl lalaldttvy lwdhttdeti nlmeteyaag yvssvswgng gdclavgtsn
      181 gevqlwdikr qkrlrtltsh vsrvgclswn syilssgsrs glihhhdvrv aehhvatlag
      241 htrevcglkw sldghylasg gddhvvniwp siqgghggfa pvqtfrqhqg avkalawcpw
      301 qssilatggg tsdkrirlwn vcsgsclsnv darsqvssil wstnykelis ghgenqlviw
      361 kypamskvtk lrghtgrvls malspdgetv asvagdetlr lwrcfqmdpi mkkekekanr
      421 vissilhqai r
//
LOCUS       XP_053911919             431 aa            linear   VRT 09-MAR-2023
DEFINITION  cell division cycle protein 20 homolog [Cuculus canorus].
ACCESSION   XP_053911919
VERSION     XP_053911919.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055944.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..431
                     /product="cell division cycle protein 20 homolog"
                     /calculated_mol_wt=47661
     Region          120..157
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <130..403
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          162..199
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          205..240
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          245..286
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          293..331
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          336..372
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..431
                     /gene="LOC128850901"
                     /coded_by="XM_054055944.1:16..1311"
                     /db_xref="GeneID:128850901"
ORIGIN      
        1 mqrtqriagp dryiasrsal dvdvakfllt rqkdpaevsp akkerqrara vilngfdvee
       61 akilglsgkd qstvagfqnn lkalyrhqvm pgsirrkgrr ilsaadrild apdirddyyl
      121 tlldwstqnl lalaldttvy lwdhttdeti nlmeteyaag yvssvswgng gdclavgtsn
      181 gevqlwdikr qkrlrtltsh vsrvgclswn syilssgsrs glihhhdvrv aehhvatlag
      241 htrevcglkw sldghylasg gddhvvniwp siqgghggfa pvqtfrqhqg avkalawcpw
      301 qssilatggg tsdkrirlwn vcsgsclsnv darsqvssil wstnykelis ghgenqlviw
      361 kypamskvtk lrghtgrvls malspdgetv asvagdetlr lwrcfqmdpi mkkekekanr
      421 vissilhqai r
//
LOCUS       XP_053911920             431 aa            linear   VRT 09-MAR-2023
DEFINITION  cell division cycle protein 20 homolog [Cuculus canorus].
ACCESSION   XP_053911920
VERSION     XP_053911920.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055945.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..431
                     /product="cell division cycle protein 20 homolog"
                     /calculated_mol_wt=47661
     Region          120..157
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <130..403
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          162..199
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          205..240
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          245..286
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          293..331
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          336..372
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..431
                     /gene="LOC128850901"
                     /coded_by="XM_054055945.1:16..1311"
                     /db_xref="GeneID:128850901"
ORIGIN      
        1 mqrtqriagp dryiasrsal dvdvakfllt rqkdpaevsp akkerqrara vilngfdvee
       61 akilglsgkd qstvagfqnn lkalyrhqvm pgsirrkgrr ilsaadrild apdirddyyl
      121 tlldwstqnl lalaldttvy lwdhttdeti nlmeteyaag yvssvswgng gdclavgtsn
      181 gevqlwdikr qkrlrtltsh vsrvgclswn syilssgsrs glihhhdvrv aehhvatlag
      241 htrevcglkw sldghylasg gddhvvniwp siqgghggfa pvqtfrqhqg avkalawcpw
      301 qssilatggg tsdkrirlwn vcsgsclsnv darsqvssil wstnykelis ghgenqlviw
      361 kypamskvtk lrghtgrvls malspdgetv asvagdetlr lwrcfqmdpi mkkekekanr
      421 vissilhqai r
//
LOCUS       XP_053911921             431 aa            linear   VRT 09-MAR-2023
DEFINITION  cell division cycle protein 20 homolog [Cuculus canorus].
ACCESSION   XP_053911921
VERSION     XP_053911921.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055946.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..431
                     /product="cell division cycle protein 20 homolog"
                     /calculated_mol_wt=47661
     Region          120..157
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <130..403
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          162..199
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          205..240
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          245..286
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          293..331
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          336..372
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..431
                     /gene="LOC128850901"
                     /coded_by="XM_054055946.1:16..1311"
                     /db_xref="GeneID:128850901"
ORIGIN      
        1 mqrtqriagp dryiasrsal dvdvakfllt rqkdpaevsp akkerqrara vilngfdvee
       61 akilglsgkd qstvagfqnn lkalyrhqvm pgsirrkgrr ilsaadrild apdirddyyl
      121 tlldwstqnl lalaldttvy lwdhttdeti nlmeteyaag yvssvswgng gdclavgtsn
      181 gevqlwdikr qkrlrtltsh vsrvgclswn syilssgsrs glihhhdvrv aehhvatlag
      241 htrevcglkw sldghylasg gddhvvniwp siqgghggfa pvqtfrqhqg avkalawcpw
      301 qssilatggg tsdkrirlwn vcsgsclsnv darsqvssil wstnykelis ghgenqlviw
      361 kypamskvtk lrghtgrvls malspdgetv asvagdetlr lwrcfqmdpi mkkekekanr
      421 vissilhqai r
//
LOCUS       XP_053911922             431 aa            linear   VRT 09-MAR-2023
DEFINITION  cell division cycle protein 20 homolog [Cuculus canorus].
ACCESSION   XP_053911922
VERSION     XP_053911922.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055947.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..431
                     /product="cell division cycle protein 20 homolog"
                     /calculated_mol_wt=47661
     Region          120..157
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <130..403
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          162..199
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          205..240
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          245..286
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          293..331
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          336..372
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..431
                     /gene="LOC128850901"
                     /coded_by="XM_054055947.1:16..1311"
                     /db_xref="GeneID:128850901"
ORIGIN      
        1 mqrtqriagp dryiasrsal dvdvakfllt rqkdpaevsp akkerqrara vilngfdvee
       61 akilglsgkd qstvagfqnn lkalyrhqvm pgsirrkgrr ilsaadrild apdirddyyl
      121 tlldwstqnl lalaldttvy lwdhttdeti nlmeteyaag yvssvswgng gdclavgtsn
      181 gevqlwdikr qkrlrtltsh vsrvgclswn syilssgsrs glihhhdvrv aehhvatlag
      241 htrevcglkw sldghylasg gddhvvniwp siqgghggfa pvqtfrqhqg avkalawcpw
      301 qssilatggg tsdkrirlwn vcsgsclsnv darsqvssil wstnykelis ghgenqlviw
      361 kypamskvtk lrghtgrvls malspdgetv asvagdetlr lwrcfqmdpi mkkekekanr
      421 vissilhqai r
//
LOCUS       XP_053911923             431 aa            linear   VRT 09-MAR-2023
DEFINITION  cell division cycle protein 20 homolog [Cuculus canorus].
ACCESSION   XP_053911923
VERSION     XP_053911923.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055948.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..431
                     /product="cell division cycle protein 20 homolog"
                     /calculated_mol_wt=47661
     Region          120..157
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <130..403
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          162..199
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          205..240
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          245..286
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          293..331
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          336..372
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..431
                     /gene="LOC128850901"
                     /coded_by="XM_054055948.1:16..1311"
                     /db_xref="GeneID:128850901"
ORIGIN      
        1 mqrtqriagp dryiasrsal dvdvakfllt rqkdpaevsp akkerqrara vilngfdvee
       61 akilglsgkd qstvagfqnn lkalyrhqvm pgsirrkgrr ilsaadrild apdirddyyl
      121 tlldwstqnl lalaldttvy lwdhttdeti nlmeteyaag yvssvswgng gdclavgtsn
      181 gevqlwdikr qkrlrtltsh vsrvgclswn syilssgsrs glihhhdvrv aehhvatlag
      241 htrevcglkw sldghylasg gddhvvniwp siqgghggfa pvqtfrqhqg avkalawcpw
      301 qssilatggg tsdkrirlwn vcsgsclsnv darsqvssil wstnykelis ghgenqlviw
      361 kypamskvtk lrghtgrvls malspdgetv asvagdetlr lwrcfqmdpi mkkekekanr
      421 vissilhqai r
//
LOCUS       XP_053911924             431 aa            linear   VRT 09-MAR-2023
DEFINITION  cell division cycle protein 20 homolog [Cuculus canorus].
ACCESSION   XP_053911924
VERSION     XP_053911924.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055949.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..431
                     /product="cell division cycle protein 20 homolog"
                     /calculated_mol_wt=47661
     Region          120..157
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <130..403
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          162..199
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          205..240
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          245..286
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          293..331
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          336..372
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..431
                     /gene="LOC128850901"
                     /coded_by="XM_054055949.1:16..1311"
                     /db_xref="GeneID:128850901"
ORIGIN      
        1 mqrtqriagp dryiasrsal dvdvakfllt rqkdpaevsp akkerqrara vilngfdvee
       61 akilglsgkd qstvagfqnn lkalyrhqvm pgsirrkgrr ilsaadrild apdirddyyl
      121 tlldwstqnl lalaldttvy lwdhttdeti nlmeteyaag yvssvswgng gdclavgtsn
      181 gevqlwdikr qkrlrtltsh vsrvgclswn syilssgsrs glihhhdvrv aehhvatlag
      241 htrevcglkw sldghylasg gddhvvniwp siqgghggfa pvqtfrqhqg avkalawcpw
      301 qssilatggg tsdkrirlwn vcsgsclsnv darsqvssil wstnykelis ghgenqlviw
      361 kypamskvtk lrghtgrvls malspdgetv asvagdetlr lwrcfqmdpi mkkekekanr
      421 vissilhqai r
//
LOCUS       XP_053911925             431 aa            linear   VRT 09-MAR-2023
DEFINITION  cell division cycle protein 20 homolog [Cuculus canorus].
ACCESSION   XP_053911925
VERSION     XP_053911925.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055950.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..431
                     /product="cell division cycle protein 20 homolog"
                     /calculated_mol_wt=47661
     Region          120..157
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <130..403
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          162..199
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          205..240
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          245..286
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          293..331
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          336..372
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..431
                     /gene="LOC128850901"
                     /coded_by="XM_054055950.1:16..1311"
                     /db_xref="GeneID:128850901"
ORIGIN      
        1 mqrtqriagp dryiasrsal dvdvakfllt rqkdpaevsp akkerqrara vilngfdvee
       61 akilglsgkd qstvagfqnn lkalyrhqvm pgsirrkgrr ilsaadrild apdirddyyl
      121 tlldwstqnl lalaldttvy lwdhttdeti nlmeteyaag yvssvswgng gdclavgtsn
      181 gevqlwdikr qkrlrtltsh vsrvgclswn syilssgsrs glihhhdvrv aehhvatlag
      241 htrevcglkw sldghylasg gddhvvniwp siqgghggfa pvqtfrqhqg avkalawcpw
      301 qssilatggg tsdkrirlwn vcsgsclsnv darsqvssil wstnykelis ghgenqlviw
      361 kypamskvtk lrghtgrvls malspdgetv asvagdetlr lwrcfqmdpi mkkekekanr
      421 vissilhqai r
//
LOCUS       XP_053911926             443 aa            linear   VRT 09-MAR-2023
DEFINITION  cell division cycle protein 20 homolog [Cuculus canorus].
ACCESSION   XP_053911926
VERSION     XP_053911926.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055951.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..443
                     /product="cell division cycle protein 20 homolog"
                     /calculated_mol_wt=48898
     Region          132..169
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <142..415
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          174..211
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          217..252
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          257..298
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          305..343
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          348..384
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..443
                     /gene="LOC128850902"
                     /coded_by="XM_054055951.1:381..1712"
                     /db_xref="GeneID:128850902"
ORIGIN      
        1 mwcgtagkeg srmqrtqria gpdryiasrs aldvdvakfl ltrqkdpaev spakkerqra
       61 ravilngfdv eeakilglsg kdqstaagfq nnlkalyrhq vmpgsirrkg rrilsaadri
      121 ldapdirddy yltlldwstq nllalaldtt vylwdhttde tinlmeteya agyvssvswg
      181 nggdclavgt sngevqlwdi krqkrlrtlt shvsrvgcls wnsyilssgs rsglihhhdv
      241 rvaehhvatl aghtrevcgl kwsldghyla sggddhvvni wpsiqgghgg fapvqtfrqh
      301 qgavkalawc pwqssilatg ggtsdkrirl wnvcsgscls nvdarsqvss ilwstnykel
      361 isghgenqlv iwkypamskv tklrghtgrv lsmalspdge tvasvagdet lrlwrcfqmd
      421 pimkkekeka nrvissilhq air
//
LOCUS       XP_053911927             443 aa            linear   VRT 09-MAR-2023
DEFINITION  cell division cycle protein 20 homolog [Cuculus canorus].
ACCESSION   XP_053911927
VERSION     XP_053911927.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055952.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..443
                     /product="cell division cycle protein 20 homolog"
                     /calculated_mol_wt=48898
     Region          132..169
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <142..415
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          174..211
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          217..252
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          257..298
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          305..343
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          348..384
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..443
                     /gene="LOC128850902"
                     /coded_by="XM_054055952.1:254..1585"
                     /db_xref="GeneID:128850902"
ORIGIN      
        1 mwcgtagkeg srmqrtqria gpdryiasrs aldvdvakfl ltrqkdpaev spakkerqra
       61 ravilngfdv eeakilglsg kdqstaagfq nnlkalyrhq vmpgsirrkg rrilsaadri
      121 ldapdirddy yltlldwstq nllalaldtt vylwdhttde tinlmeteya agyvssvswg
      181 nggdclavgt sngevqlwdi krqkrlrtlt shvsrvgcls wnsyilssgs rsglihhhdv
      241 rvaehhvatl aghtrevcgl kwsldghyla sggddhvvni wpsiqgghgg fapvqtfrqh
      301 qgavkalawc pwqssilatg ggtsdkrirl wnvcsgscls nvdarsqvss ilwstnykel
      361 isghgenqlv iwkypamskv tklrghtgrv lsmalspdge tvasvagdet lrlwrcfqmd
      421 pimkkekeka nrvissilhq air
//
LOCUS       XP_053911929             321 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053911929
VERSION     XP_053911929.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055954.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_026527860) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..321
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..321
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=35610
     Region          34..303
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          35..61
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          68..94
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(90,93..94,106..111,113..114,117,162,164..168,204,
                     207..209,211..213,215..216,261,264..265,267..268,271,
                     277..278,280..282,285,288..289)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          106..136
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          148..169
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          204..234
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          241..271
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          278..303
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..321
                     /gene="LOC128850903"
                     /coded_by="XM_054055954.1:518..1483"
                     /db_xref="GeneID:128850903"
ORIGIN      
        1 mfsasyaqrq qmsnsssitq fillafadtr elqllhfwlf lgiylaallg ngliittitc
       61 dhhlhtpmyf fllilsildl gsmstivpks manslrdira isytgcasqv flyvffisad
      121 yflltimsyd ryvaickplh ygtllgsrac vhmaaaawga gflyallhta ntfslplcqg
      181 navdqffcei pqilklscsq syireaglsv favclafgcf vfivvsyvqi fravlripse
      241 qgrhkafstc lphlvvvslf vstawfaylk ppsmsspsld lvvsvlysvv ppavnpliys
      301 lrnqqlkdaa relmtgffrq g
//
LOCUS       XP_009559393             289 aa            linear   VRT 09-MAR-2023
DEFINITION  TLR adapter interacting with SLC15A4 on the lysosome [Cuculus
            canorus].
ACCESSION   XP_009559393
VERSION     XP_009559393.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009561098.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009559393.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..289
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..289
                     /product="TLR adapter interacting with SLC15A4 on the
                     lysosome"
                     /calculated_mol_wt=32142
     Region          1..284
                     /region_name="TASL"
                     /note="TLR adaptor interacting with SLC15A4 on the
                     lysosome; pfam15133"
                     /db_xref="CDD:434486"
     CDS             1..289
                     /gene="TASL"
                     /coded_by="XM_009561098.2:237..1106"
                     /db_xref="GeneID:104059425"
ORIGIN      
        1 mlsegylygi aylcedlnse lyskssaeev vyemrsinfs stdeaqgksl lqrcrsagrc
       61 issvcsskhs rrqkdnllqp tqhpasegqs spalhvcegl tkkdtylvpp scksicknyn
      121 dlhiagdyvv pissvttdft cdsgigpfle sseipppmds vrippsdtnr kpvqgysscw
      181 rlaslmphqq plsdsalndy leqklmelyk qyimdstanr asptqilase limtnvdqit
      241 mqisrernme ttkakdivis rflqiyseki sseistpslh ispyshtnt
//
LOCUS       XP_053941283             352 aa            linear   VRT 09-MAR-2023
DEFINITION  keratocan [Cuculus canorus].
ACCESSION   XP_053941283
VERSION     XP_053941283.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085308.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..352
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..352
                     /product="keratocan"
                     /calculated_mol_wt=40068
     Region          35..>322
                     /region_name="PRK15370"
                     /note="type III secretion system effector E3 ubiquitin
                     transferase SlrP"
                     /db_xref="CDD:185268"
     Region          73..96
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          97..122
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          123..138
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          144..167
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          168..193
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          194..215
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          216..238
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          239..263
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     CDS             1..352
                     /gene="KERA"
                     /coded_by="XM_054085308.1:66..1124"
                     /db_xref="GeneID:104058423"
ORIGIN      
        1 mtlkvytavl flflvnsvwt rnvrqvydel dpehwshyts ecprecfcpp sfpnalycdn
       61 kglkeipaip ariwylylqn nlietvsekp fvnathlrwi nlnknkitnn giengvlskm
      121 krllylfled neleevpapl pvgleqlrla rnkisripeg vfnnlenltm ldlqqnslld
      181 salqsdtfqg lnnlmqlnia knslkkmpls ipantlqlfl dnnsievipe nyfsaipkvt
      241 flrlnynkls ddgippngfn vssildlqls hnqltkippi nahlehlhld hnkiksvngt
      301 qicpvsiava edhglygnip rlrylrldgn eiqppipldi micfrllqav ii
//
LOCUS       XP_053909271             352 aa            linear   VRT 09-MAR-2023
DEFINITION  keratocan [Cuculus canorus].
ACCESSION   XP_053909271
VERSION     XP_053909271.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053296.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..352
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..352
                     /product="keratocan"
                     /calculated_mol_wt=40068
     Region          35..>322
                     /region_name="PRK15370"
                     /note="type III secretion system effector E3 ubiquitin
                     transferase SlrP"
                     /db_xref="CDD:185268"
     Region          73..96
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          97..122
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          123..138
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          144..167
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          168..193
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          194..215
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          216..238
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          239..263
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     CDS             1..352
                     /gene="KERA"
                     /coded_by="XM_054053296.1:184..1242"
                     /db_xref="GeneID:104058423"
ORIGIN      
        1 mtlkvytavl flflvnsvwt rnvrqvydel dpehwshyts ecprecfcpp sfpnalycdn
       61 kglkeipaip ariwylylqn nlietvsekp fvnathlrwi nlnknkitnn giengvlskm
      121 krllylfled neleevpapl pvgleqlrla rnkisripeg vfnnlenltm ldlqqnslld
      181 salqsdtfqg lnnlmqlnia knslkkmpls ipantlqlfl dnnsievipe nyfsaipkvt
      241 flrlnynkls ddgippngfn vssildlqls hnqltkippi nahlehlhld hnkiksvngt
      301 qicpvsiava edhglygnip rlrylrldgn eiqppipldi micfrllqav ii
//
LOCUS       XP_053912732             428 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-5 receptor subunit alpha-like [Cuculus canorus].
ACCESSION   XP_053912732
VERSION     XP_053912732.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056757.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..428
                     /product="interleukin-5 receptor subunit alpha-like"
                     /calculated_mol_wt=49965
     Region          140..234
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cl21522"
                     /db_xref="CDD:473895"
     Region          238..327
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(317..318,320..321)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..428
                     /gene="LOC128850939"
                     /coded_by="XM_054056757.1:2094..3380"
                     /db_xref="GeneID:128850939"
ORIGIN      
        1 marvtvipvm lifsffqrkm lfstslasgq pdvedalrll nvlwitkhes svilswnnnl
       61 tkeeteqysv kyilsykffn ttherkerlq ekkkiirlnl hsgfnakvkt qlfaketenv
      121 ikesgwtkft ykappvyiqn lsciiynisf fnctwyikae apediqiffs yrhvgkdfec
      181 qqyikstgne nigchmkeif fqpsrkinln vtvrhlrnns rrlsyykafi pqtieklnpp
      241 mnvsfsleng svkihwkppp tigsasskcf lyqvkitdrk ivdvtaekye yplhkpakkc
      301 aaqvrvkkev cirnkiwsew sepvfiydek tvdimllclt sfcpliflgg llifiyirhr
      361 clevitmpvp hpsdnirtwl aaneashqkq psmqkamhse vimeileenr deniqqqrcl
      421 klpalddl
//
LOCUS       XP_053913828            1785 aa            linear   VRT 09-MAR-2023
DEFINITION  laminin subunit beta-1 [Cuculus canorus].
ACCESSION   XP_053913828
VERSION     XP_053913828.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057853.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1785
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1785
                     /product="laminin subunit beta-1"
                     /calculated_mol_wt=196698
     Region          33..267
                     /region_name="Laminin_N"
                     /note="Laminin N-terminal (Domain VI); pfam00055"
                     /db_xref="CDD:459653"
     Region          269..321
                     /region_name="EGF_Lam"
                     /note="Laminin-type epidermal growth factor-like domain;
                     laminins are the major noncollagenous components of
                     basement membranes that mediate cell adhesion, growth
                     migration, and differentiation; the laminin-type epidermal
                     growth factor-like module occurs in...; cd00055"
                     /db_xref="CDD:238012"
     Site            order(269,271,281,296,298,307)
                     /site_type="active"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     Region          333..385
                     /region_name="EGF_Lam"
                     /note="Laminin-type epidermal growth factor-like domain;
                     laminins are the major noncollagenous components of
                     basement membranes that mediate cell adhesion, growth
                     migration, and differentiation; the laminin-type epidermal
                     growth factor-like module occurs in...; cd00055"
                     /db_xref="CDD:238012"
     Site            order(333,335,342,360,363,372)
                     /site_type="active"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     Region          396..453
                     /region_name="Laminin_EGF"
                     /note="Laminin EGF domain; pfam00053"
                     /db_xref="CDD:395007"
     Site            order(396,398,409,424,426,435)
                     /site_type="active"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     Region          456..510
                     /region_name="Laminin_EGF"
                     /note="Laminin EGF domain; pfam00053"
                     /db_xref="CDD:395007"
     Site            order(456,458,470,477,479,488)
                     /site_type="active"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     Region          508..552
                     /region_name="EGF_Lam"
                     /note="Laminin-type epidermal growth factor-like domai;
                     smart00180"
                     /db_xref="CDD:214543"
     Site            order(508,510,520,527,529,538)
                     /site_type="active"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     Region          771..816
                     /region_name="EGF_Lam"
                     /note="Laminin-type epidermal growth factor-like domai;
                     smart00180"
                     /db_xref="CDD:214543"
     Site            order(771,773,783,790,792,801)
                     /site_type="active"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     Region          819..867
                     /region_name="Laminin_EGF"
                     /note="Laminin EGF domain; pfam00053"
                     /db_xref="CDD:395007"
     Site            order(819,821,831,838,840,849)
                     /site_type="active"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     Region          864..909
                     /region_name="EGF_Lam"
                     /note="Laminin-type epidermal growth factor-like domain;
                     laminins are the major noncollagenous components of
                     basement membranes that mediate cell adhesion, growth
                     migration, and differentiation; the laminin-type epidermal
                     growth factor-like module occurs in...; cd00055"
                     /db_xref="CDD:238012"
     Site            order(865,867,874,881,884,893)
                     /site_type="active"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     Region          866..973
                     /region_name="TNFRSF"
                     /note="Tumor necrosis factor receptor superfamily
                     (TNFRSF); cl22855"
                     /db_xref="CDD:473981"
     Region          896..942
                     /region_name="CRD2"
                     /note="CRD2 [structural motif]"
                     /db_xref="CDD:276900"
     Region          1026..1080
                     /region_name="Laminin_EGF"
                     /note="Laminin EGF domain; pfam00053"
                     /db_xref="CDD:395007"
     Region          1083..1131
                     /region_name="Laminin_EGF"
                     /note="Laminin EGF domain; pfam00053"
                     /db_xref="CDD:395007"
     Site            order(1083,1085,1095,1102,1104,1113)
                     /site_type="active"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     Region          1131..1174
                     /region_name="Laminin_EGF"
                     /note="Laminin EGF domain; pfam00053"
                     /db_xref="CDD:395007"
     Site            order(1131,1133,1143,1150,1152,1161)
                     /site_type="active"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     Region          <1254..1776
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          1713..1785
                     /region_name="cc_LAMB1_C"
                     /note="C-terminal coiled-coil domain found in laminin
                     subunit beta-1 (LAMB1); cd22300"
                     /db_xref="CDD:411971"
     Site            order(1717..1718,1721..1722,1724..1725,1728,1735..1736,
                     1738..1739,1742,1745..1746,1749..1750,1752..1754,
                     1756..1757,1760,1763..1764,1766..1768,1770..1771,
                     1773..1775,1777..1779,1781..1785)
                     /site_type="other"
                     /note="trimer interface [polypeptide binding]"
                     /db_xref="CDD:411971"
     CDS             1..1785
                     /gene="LAMB1"
                     /coded_by="XM_054057853.1:123..5480"
                     /db_xref="GeneID:104056062"
ORIGIN      
        1 mgrlqlalcc clalcsaaaq epeysygcae gscypatgdl ligraarlsa sstcglrqpe
       61 pycivshlqe dkkcficdse dpfhdtlnpd shrienvvtt fapnrlklww qsenglenvt
      121 iqlnleaefh fthlimtfkt frpaamlier ssdfgktwqv yryfaydces sfpgistgpm
      181 kkvddiicds rysdiepste geviyrvldp afriedpysp riqnllkitn lrvkfvklht
      241 lgdnlldsrm eirekyyyai ydmvvrgncf cyghasecap vdgfneeveg mvhghcmcrh
      301 ntkglnceqc mdfyhdlpwr paegrnsnac kkcncnghss qchfdmavym ttgntsggvc
      361 ddcqhntigh nceqckpfyf qhperdlrdp dvcepcncdp agsqnggicd rytdfsagli
      421 agqcrcklfv egercdlcke gfyglsaddp vgcqscacnp lgthpggnpc dsetgncyck
      481 rlvtgkqcdh clpehwglsn dmdgcrpcdc dqggalnnnc ssesgqcecr phmfgrqcnq
      541 vepgyyfisl dhyifeaeea slgpgvniie rqytpdrtps wtgigfvrvp egaylefhid
      601 nipysmeydi viryepqlpd qwekavisvs rpgkiptgsr cgntvpdddn qvvslspgsr
      661 yvvlprpvcf ekglnytirl elpqyssvdt etespytlid slvlmpycks ldiftvggsg
      721 edvvtnsawe tfqryrclen srsvvktpmt dvckniifsi sallhetals cqcdpqgsls
      781 svcdpsggqc qcrpnvvgrq cdrcapgtfg fgpsgcrpce chirgsynaf cdaetgqchc
      841 fpgvygrqcd rclpgfwgfp scqpchcngh addcspytge clscrdhtag hncercqtgy
      901 ygdpilgsgd hcrpcpcpdg pesgrqfasg cyqdpvtlqv tcvcsvgyig srcdecasgf
      961 fgspdevgga cqpcqcnnni dttdpeacdk ktgmclkcly htegenchlc kqgyygsalq
     1021 qdcrkcvcny lgtvredceg sescrceaat gqcrclpnvv gqtcdrcapn twrlasgagc
     1081 eqcdcdptrs lgpacneftg qcqcmpgfgg rtcrecqelf wgdpdvecra cdcnphgiqt
     1141 pqcdrttgqc icnegvegpr cdkcsrgysg ffpdcvpchq cfalwdviis elanktqqfl
     1201 dranalkitg vtgpyqqtln tleeklgeik tiiaqnpaae plknignlfe eaekltadlt
     1261 vkiadiegnl salavksnst dadlsaletd aksldrvvke laeqlefiki sdvrgaldsi
     1321 tkyfqmslea eervnastvy pdsavelsaq trqevedlin ekeaqfktkq eeqsrlldel
     1381 agklqsldls evaektcgtp agascaesec gglncrtdeg ekkcggpgcs glmtvahnaw
     1441 qkatdfdrdi lsalaeveql srmvseakqr adeakqnaqa vllktnatke qvdrsnedlr
     1501 klikqirdfl mqdsadldsi eavanevlnm empstpqqlq altedirerv eslsnvevil
     1561 qqsagdiara etlleeakka skgatnvkvt admvkaalee aekaqnaaek aikqadedik
     1621 gtqdlltsie senaaseetl nnassrllel eksvedlkek aatnsenvdn ieekiitakq
     1681 naeevkkvln telndkyktv edliakktee sadarrkagm lqdeakalla qansklqllk
     1741 dlentyennq kvledkakql veleetvrsl lqtisqkvav ystcl
//
LOCUS       XP_053914982            1792 aa            linear   VRT 09-MAR-2023
DEFINITION  laminin subunit beta-4 [Cuculus canorus].
ACCESSION   XP_053914982
VERSION     XP_053914982.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059007.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1792
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1792
                     /product="laminin subunit beta-4"
                     /calculated_mol_wt=198675
     Region          58..293
                     /region_name="Laminin_N"
                     /note="Laminin N-terminal (Domain VI); pfam00055"
                     /db_xref="CDD:459653"
     Region          294..350
                     /region_name="EGF_Lam"
                     /note="Laminin-type epidermal growth factor-like domain;
                     laminins are the major noncollagenous components of
                     basement membranes that mediate cell adhesion, growth
                     migration, and differentiation; the laminin-type epidermal
                     growth factor-like module occurs in...; cd00055"
                     /db_xref="CDD:238012"
     Site            order(295,297,304,325,327,336)
                     /site_type="active"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     Region          362..422
                     /region_name="Laminin_EGF"
                     /note="Laminin EGF domain; pfam00053"
                     /db_xref="CDD:395007"
     Site            order(362,364,371,389,392,401)
                     /site_type="active"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     Region          425..482
                     /region_name="Laminin_EGF"
                     /note="Laminin EGF domain; pfam00053"
                     /db_xref="CDD:395007"
     Site            order(425,427,438,453,455,464)
                     /site_type="active"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     Region          484..533
                     /region_name="EGF_Lam"
                     /note="Laminin-type epidermal growth factor-like domain;
                     laminins are the major noncollagenous components of
                     basement membranes that mediate cell adhesion, growth
                     migration, and differentiation; the laminin-type epidermal
                     growth factor-like module occurs in...; cd00055"
                     /db_xref="CDD:238012"
     Site            order(485,487,498,505,507,516)
                     /site_type="active"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     Region          535..578
                     /region_name="EGF_Lam"
                     /note="Laminin-type epidermal growth factor-like domain;
                     laminins are the major noncollagenous components of
                     basement membranes that mediate cell adhesion, growth
                     migration, and differentiation; the laminin-type epidermal
                     growth factor-like module occurs in...; cd00055"
                     /db_xref="CDD:238012"
     Site            order(536,538,548,555,557,566)
                     /site_type="active"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     Region          799..844
                     /region_name="EGF_Lam"
                     /note="Laminin-type epidermal growth factor-like domai;
                     smart00180"
                     /db_xref="CDD:214543"
     Site            order(799,801,811,818,820,829)
                     /site_type="active"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     Region          847..895
                     /region_name="Laminin_EGF"
                     /note="Laminin EGF domain; pfam00053"
                     /db_xref="CDD:395007"
     Site            order(847,849,859,866,868,877)
                     /site_type="active"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     Region          892..939
                     /region_name="EGF_Lam"
                     /note="Laminin-type epidermal growth factor-like domain;
                     laminins are the major noncollagenous components of
                     basement membranes that mediate cell adhesion, growth
                     migration, and differentiation; the laminin-type epidermal
                     growth factor-like module occurs in...; cd00055"
                     /db_xref="CDD:238012"
     Site            order(893,895,902,909,912,921)
                     /site_type="active"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     Region          941..997
                     /region_name="Laminin_EGF"
                     /note="Laminin EGF domain; pfam00053"
                     /db_xref="CDD:395007"
     Region          999..1050
                     /region_name="EGF_Lam"
                     /note="Laminin-type epidermal growth factor-like domain;
                     laminins are the major noncollagenous components of
                     basement membranes that mediate cell adhesion, growth
                     migration, and differentiation; the laminin-type epidermal
                     growth factor-like module occurs in...; cd00055"
                     /db_xref="CDD:238012"
     Site            order(1000,1002,1014,1021,1024,1033)
                     /site_type="active"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     Region          1051..1108
                     /region_name="EGF_Lam"
                     /note="Laminin-type epidermal growth factor-like domain;
                     laminins are the major noncollagenous components of
                     basement membranes that mediate cell adhesion, growth
                     migration, and differentiation; the laminin-type epidermal
                     growth factor-like module occurs in...; cd00055"
                     /db_xref="CDD:238012"
     Site            order(1052,1054,1073,1080,1082,1091)
                     /site_type="active"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     Region          1110..1158
                     /region_name="Laminin_EGF"
                     /note="Laminin EGF domain; pfam00053"
                     /db_xref="CDD:395007"
     Site            order(1110,1112,1122,1129,1131,1140)
                     /site_type="active"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     Region          1158..1202
                     /region_name="EGF_Lam"
                     /note="Laminin-type epidermal growth factor-like domai;
                     smart00180"
                     /db_xref="CDD:214543"
     Site            order(1158,1160,1170,1177,1179,1188)
                     /site_type="active"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     Region          <1453..1786
                     /region_name="Mplasa_alph_rch"
                     /note="helix-rich Mycoplasma protein; TIGR04523"
                     /db_xref="CDD:275316"
     Region          1721..1790
                     /region_name="cc_LAMB_C"
                     /note="C-terminal coiled-coil domain found in the laminin
                     subunit beta (LAMB) family; cl40438"
                     /db_xref="CDD:424069"
     Site            order(1723..1724,1727..1728,1730..1731,1734,1741..1742,
                     1744..1745,1748,1751..1752,1755..1756,1758..1760,
                     1762..1763,1766,1769..1770,1772..1774,1776..1777,
                     1779..1781,1783..1785,1787..1790)
                     /site_type="other"
                     /note="trimer interface [polypeptide binding]"
                     /db_xref="CDD:411969"
     CDS             1..1792
                     /gene="LAMB4"
                     /coded_by="XM_054059007.1:11..5389"
                     /db_xref="GeneID:104056087"
ORIGIN      
        1 maafcfsnrd fvlasltffq whqsefhegg mrlelailly ltlirlqhaq ddcdagschp
       61 aigdlllgrs kqltasstcg mktpqkycii gyleaeqkcf lcdsrypyns ytqhnshmie
      121 nvittfkpdr kkkwwqseng idhvsirldl etlfqfshli ltfktfrpaa mlverstdfg
      181 qtwkvfryfa qdcaasfpni stgpaksvgd vfcdsrysdi epstegevvl ksldpsfgie
      241 npyvphiqel itltnlrinf tklhtlgdal lgrrhsdple kyyyavyemv vrgscfcngh
      301 gsqcdpvqnl rgdvfhqpgm vhgrcichhn teglscerck dfyndapwrp aegtqhsack
      361 rcncnghsar chfdmavyqa sggvsggvce dcqdntigqh cdkckpffyq dplkvisdpq
      421 aclpcncdle gtlhngmces htdpalgmva gqcpckenve gvrcdkcran yyglsssdpl
      481 gcqpcnchps gslpfsicdp atgeclcqqf atgrrcekcl vgywglgssl ygcspcdcdi
      541 ggsrsnlcsp kdgqchclpn ivgrqcnepa pgyfflpldy yiyeaehakl lsgsaplgvv
      601 qfgqdsavlv vfrqpsanrs vtwtgpgfar vpsgaglsfa innvpfamdf ditiryepes
      661 ledwlasvai rptgilssqr cknkglsqdp hvlplpatkr iallqtpvcl epgteysvdv
      721 yfsqpsdpkt ksfilidslg liprissven lcsekdidey qkyhcieias evgphvlpea
      781 carlivsmsa rihngaaack cnpqgslnts csklggqcqc kanvvgrccd tcsagsygfg
      841 fhgcyacech pqgslstlcd qvtgqcscrq evdgqrcnrc lagyfgfpyc rpcrchgyae
      901 lcdpvtgacl ncrgfttgsh cercvdgyyg ntlngepcrp cmcpgtptsn nyfarscyqh
      961 sqtaqlvcnc legysgnqcd ecpsgfykip gshgldcapc scndnidvtd pescnritge
     1021 ctkclhnthg ancefckpgy fgsalnqncq rcmcnavgvh pamcpggdav clcdpatgac
     1081 pclpnvvgtt cdqctsgywn lasgkgcqsc dcdpknslnn qcnqftgqcp ckigysgryc
     1141 deceenyfgn pqmhciscsc npkgtnqpkc dkatgacncr tgitgrfcdq csrgfekdfp
     1201 scqqchlcfd qwdteitala qtvqglmrfa akledkggqm sscdmrfkaf edaiaeieri
     1261 lrhpvlslea lsgikdfhny iqqkvaqmdr lhhtlyefpd lnkniedige eadlvyellq
     1321 qkihlhqsfh hlnlkeaisn irkhfevsll aeqktsginp tvryskytrn halamlghht
     1381 lkasnmleql kmikipniqn lnekmcglpg dqpcvtaacg galcrdshgl rhcggpkcsg
     1441 alplstvafr kaeetamlln nlttqlqepe nqvesirnma eysklkgsqf neqlersmnq
     1501 iqldgeitke firkvkdfll desappedie kvanyilqin lpltpreltg mlgkiriimk
     1561 pcekyklnas krnrkreeaq mllleaqead eaaqalppvd kinnklknvv ksqqhskntf
     1621 iklneeirsi rtqisqaenq vnetndklnd lsakqskmed eiatlqekml mnknqatkar
     1681 aqaeaahkqa qnidnefadt krkyailqek lraqgppkva lekvkqlkee aeklaeetek
     1741 kikritdlek klqdlnqtkq dkaeqlkqle eqviaiknei teqeskyatc ks
//
LOCUS       XP_053916067             508 aa            linear   VRT 09-MAR-2023
DEFINITION  dihydrolipoyl dehydrogenase, mitochondrial [Cuculus canorus].
ACCESSION   XP_053916067
VERSION     XP_053916067.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060092.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..508
                     /product="dihydrolipoyl dehydrogenase, mitochondrial"
                     /calculated_mol_wt=53961
     Region          40..500
                     /region_name="Lpd"
                     /note="Dihydrolipoamide dehydrogenase (E3) component of
                     pyruvate/2-oxoglutarate dehydrogenase complex or
                     glutathione oxidoreductase [Energy production and
                     conversion]; COG1249"
                     /db_xref="CDD:440861"
     CDS             1..508
                     /gene="DLD"
                     /coded_by="XM_054060092.1:108..1634"
                     /db_xref="GeneID:104056088"
ORIGIN      
        1 mqrwarasca larrshfdri hrglqgifav sqrtyadqvd advtvigsgp ggyvaaikaa
       61 qlgfktvcve knetlggtcl nvgcipskal lnnshlyhla hgkdfanrgi eitgirlnle
      121 kmmeqksgav kaltggiahl fkqnkvlhvs gfgkitgknq vtatkedgst qvintknili
      181 atgsevapfp gitidedniv sstgalslkk vpekmvviga gvigvelgsv wqrlgadvta
      241 vefmghvggm gidmeisknf qrilqkqglk fklntkvtga tkkpdgkidv aveaaaggka
      301 evitcdvllv cigrrpftkn lgledigiel dkkgripvnn rfqtkipniy aigdvvagpm
      361 lahkaedegi lcvegmagga vhidyncvps viythpevaw vgkseeqlke egieykigkf
      421 pfaansrakt nadtdgmvki lsqkstdrml gahilgagag emvneaalam eygascedva
      481 rvchahptvs eafreanlaa sfgkainf
//
LOCUS       XP_053919421             855 aa            linear   VRT 09-MAR-2023
DEFINITION  thrombospondin type-1 domain-containing protein 1 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053919421
VERSION     XP_053919421.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063446.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..855
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..855
                     /product="thrombospondin type-1 domain-containing protein
                     1 isoform X1"
                     /calculated_mol_wt=96148
     Region          344..393
                     /region_name="TSP1"
                     /note="Thrombospondin type 1 repeats; smart00209"
                     /db_xref="CDD:214559"
     CDS             1..855
                     /gene="THSD1"
                     /coded_by="XM_054063446.1:1206..3773"
                     /db_xref="GeneID:104066138"
ORIGIN      
        1 mkqmlkdfsn lllvvlcdyv lgeveyllle hpghvafsnd tvsveyqyfs ggnvtaehps
       61 vlllhartne iiarkqlpan qsqgmvqfec fhfksagdfl frmvspsdng saaqwsrrsi
      121 stlhvewpvf hidlnrssev igssirvglf tneqlcamne tvvsldvift stlyefgris
      181 sdetlgvrts keiplsrsqw vefdcppvaq eiyitvllks lethsiiasi gpidllhkfg
      241 yrlvvapeat cenlvqvfvv sppctsvsgk ivvykealkh psqrttwlye ntlhpgdnwt
      301 efnctlfdvg knkycfdlfn fsnrsrfptr vkecmviqrn meawspwqpw spcsvtcgdg
      361 vrerfrecft sspakpgctg spretslcsl eeclsiktpt ppsvqagedq kannivtvtg
      421 islclfiifa tvlitlwrkl craqqcstav rrnsvhspgf rknsdeenic qgnkqrdsfa
      481 eggdapvnip ltyrrslqft qeddvsgsen fqpnaqkiip pifsyrlaqq qlkemkkkgl
      541 tettkvyhvs qnpltdtvvg attmlplsge tqeeaaankf rikspfldqp agqpkfpges
      601 ahprldfpfs qanpamsptq tsqtlirrah fkhhdnrgdl pergchrnpq frrtasfhem
      661 kkarpfrers mstltprqtp lynsrtrtwd qgfedrmrpk srntnpacek ldqphstvpg
      721 cepqghsakc hhrsgppvkk ldlitdrqpa gqekavdkpe pnrskrgpsp nprgvwrket
      781 glagkdnsqr glsvspaqhr rdkcqsfpld pefafydntt fglteaeqqm idlpgyfgsn
      841 eedetstlsv eklvi
//
LOCUS       XP_053920140             855 aa            linear   VRT 09-MAR-2023
DEFINITION  thrombospondin type-1 domain-containing protein 1 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053920140
VERSION     XP_053920140.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064165.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..855
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..855
                     /product="thrombospondin type-1 domain-containing protein
                     1 isoform X1"
                     /calculated_mol_wt=96148
     Region          344..393
                     /region_name="TSP1"
                     /note="Thrombospondin type 1 repeats; smart00209"
                     /db_xref="CDD:214559"
     CDS             1..855
                     /gene="THSD1"
                     /coded_by="XM_054064165.1:346..2913"
                     /db_xref="GeneID:104066138"
ORIGIN      
        1 mkqmlkdfsn lllvvlcdyv lgeveyllle hpghvafsnd tvsveyqyfs ggnvtaehps
       61 vlllhartne iiarkqlpan qsqgmvqfec fhfksagdfl frmvspsdng saaqwsrrsi
      121 stlhvewpvf hidlnrssev igssirvglf tneqlcamne tvvsldvift stlyefgris
      181 sdetlgvrts keiplsrsqw vefdcppvaq eiyitvllks lethsiiasi gpidllhkfg
      241 yrlvvapeat cenlvqvfvv sppctsvsgk ivvykealkh psqrttwlye ntlhpgdnwt
      301 efnctlfdvg knkycfdlfn fsnrsrfptr vkecmviqrn meawspwqpw spcsvtcgdg
      361 vrerfrecft sspakpgctg spretslcsl eeclsiktpt ppsvqagedq kannivtvtg
      421 islclfiifa tvlitlwrkl craqqcstav rrnsvhspgf rknsdeenic qgnkqrdsfa
      481 eggdapvnip ltyrrslqft qeddvsgsen fqpnaqkiip pifsyrlaqq qlkemkkkgl
      541 tettkvyhvs qnpltdtvvg attmlplsge tqeeaaankf rikspfldqp agqpkfpges
      601 ahprldfpfs qanpamsptq tsqtlirrah fkhhdnrgdl pergchrnpq frrtasfhem
      661 kkarpfrers mstltprqtp lynsrtrtwd qgfedrmrpk srntnpacek ldqphstvpg
      721 cepqghsakc hhrsgppvkk ldlitdrqpa gqekavdkpe pnrskrgpsp nprgvwrket
      781 glagkdnsqr glsvspaqhr rdkcqsfpld pefafydntt fglteaeqqm idlpgyfgsn
      841 eedetstlsv eklvi
//
LOCUS       XP_053920916             855 aa            linear   VRT 09-MAR-2023
DEFINITION  thrombospondin type-1 domain-containing protein 1 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053920916
VERSION     XP_053920916.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064941.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..855
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..855
                     /product="thrombospondin type-1 domain-containing protein
                     1 isoform X1"
                     /calculated_mol_wt=96148
     Region          344..393
                     /region_name="TSP1"
                     /note="Thrombospondin type 1 repeats; smart00209"
                     /db_xref="CDD:214559"
     CDS             1..855
                     /gene="THSD1"
                     /coded_by="XM_054064941.1:228..2795"
                     /db_xref="GeneID:104066138"
ORIGIN      
        1 mkqmlkdfsn lllvvlcdyv lgeveyllle hpghvafsnd tvsveyqyfs ggnvtaehps
       61 vlllhartne iiarkqlpan qsqgmvqfec fhfksagdfl frmvspsdng saaqwsrrsi
      121 stlhvewpvf hidlnrssev igssirvglf tneqlcamne tvvsldvift stlyefgris
      181 sdetlgvrts keiplsrsqw vefdcppvaq eiyitvllks lethsiiasi gpidllhkfg
      241 yrlvvapeat cenlvqvfvv sppctsvsgk ivvykealkh psqrttwlye ntlhpgdnwt
      301 efnctlfdvg knkycfdlfn fsnrsrfptr vkecmviqrn meawspwqpw spcsvtcgdg
      361 vrerfrecft sspakpgctg spretslcsl eeclsiktpt ppsvqagedq kannivtvtg
      421 islclfiifa tvlitlwrkl craqqcstav rrnsvhspgf rknsdeenic qgnkqrdsfa
      481 eggdapvnip ltyrrslqft qeddvsgsen fqpnaqkiip pifsyrlaqq qlkemkkkgl
      541 tettkvyhvs qnpltdtvvg attmlplsge tqeeaaankf rikspfldqp agqpkfpges
      601 ahprldfpfs qanpamsptq tsqtlirrah fkhhdnrgdl pergchrnpq frrtasfhem
      661 kkarpfrers mstltprqtp lynsrtrtwd qgfedrmrpk srntnpacek ldqphstvpg
      721 cepqghsakc hhrsgppvkk ldlitdrqpa gqekavdkpe pnrskrgpsp nprgvwrket
      781 glagkdnsqr glsvspaqhr rdkcqsfpld pefafydntt fglteaeqqm idlpgyfgsn
      841 eedetstlsv eklvi
//
LOCUS       XP_053921666             802 aa            linear   VRT 09-MAR-2023
DEFINITION  thrombospondin type-1 domain-containing protein 1 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053921666
VERSION     XP_053921666.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065691.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..802
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..802
                     /product="thrombospondin type-1 domain-containing protein
                     1 isoform X2"
                     /calculated_mol_wt=90298
     CDS             1..802
                     /gene="THSD1"
                     /coded_by="XM_054065691.1:1207..3615"
                     /db_xref="GeneID:104066138"
ORIGIN      
        1 mkqmlkdfsn lllvvlcdyv lgeveyllle hpghvafsnd tvsveyqyfs ggnvtaehps
       61 vlllhartne iiarkqlpan qsqgmvqfec fhfksagdfl frmvspsdng saaqwsrrsi
      121 stlhvewpvf hidlnrssev igssirvglf tneqlcamne tvvsldvift stlyefgris
      181 sdetlgvrts keiplsrsqw vefdcppvaq eiyitvllks lethsiiasi gpidllhkfg
      241 yrlvvapeat cenlvqvfvv sppctsvsgk ivvykealkh psqrttwlye ntlhpgdnwt
      301 efnctlfdvg knkycfdlfn fsnrsrfptr vkecmviqrn maiktptpps vqagedqkan
      361 nivtvtgisl clfiifatvl itlwrklcra qqcstavrrn svhspgfrkn sdeenicqgn
      421 kqrdsfaegg dapvniplty rrslqftqed dvsgsenfqp naqkiippif syrlaqqqlk
      481 emkkkgltet tkvyhvsqnp ltdtvvgatt mlplsgetqe eaaankfrik spfldqpagq
      541 pkfpgesahp rldfpfsqan pamsptqtsq tlirrahfkh hdnrgdlper gchrnpqfrr
      601 tasfhemkka rpfrersmst ltprqtplyn srtrtwdqgf edrmrpksrn tnpacekldq
      661 phstvpgcep qghsakchhr sgppvkkldl itdrqpagqe kavdkpepnr skrgpspnpr
      721 gvwrketgla gkdnsqrgls vspaqhrrdk cqsfpldpef afydnttfgl teaeqqmidl
      781 pgyfgsneed etstlsvekl vi
//
LOCUS       XP_053922387             771 aa            linear   VRT 09-MAR-2023
DEFINITION  thrombospondin type-1 domain-containing protein 1 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053922387
VERSION     XP_053922387.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066412.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..771
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..771
                     /product="thrombospondin type-1 domain-containing protein
                     1 isoform X3"
                     /calculated_mol_wt=86764
     Region          260..309
                     /region_name="TSP1"
                     /note="Thrombospondin type 1 repeats; smart00209"
                     /db_xref="CDD:214559"
     CDS             1..771
                     /gene="THSD1"
                     /coded_by="XM_054066412.1:334..2649"
                     /db_xref="GeneID:104066138"
ORIGIN      
        1 mvqfecfhfk sagdflfrmv spsdngsaaq wsrrsistlh vewpvfhidl nrssevigss
       61 irvglftneq lcamnetvvs ldviftstly efgrissdet lgvrtskeip lsrsqwvefd
      121 cppvaqeiyi tvllksleth siiasigpid llhkfgyrlv vapeatcenl vqvfvvsppc
      181 tsvsgkivvy kealkhpsqr ttwlyentlh pgdnwtefnc tlfdvgknky cfdlfnfsnr
      241 srfptrvkec mviqrnmeaw spwqpwspcs vtcgdgvrer frecftsspa kpgctgspre
      301 tslcsleecl siktptppsv qagedqkann ivtvtgislc lfiifatvli tlwrklcraq
      361 qcstavrrns vhspgfrkns deenicqgnk qrdsfaeggd apvnipltyr rslqftqedd
      421 vsgsenfqpn aqkiippifs yrlaqqqlke mkkkgltett kvyhvsqnpl tdtvvgattm
      481 lplsgetqee aaankfriks pfldqpagqp kfpgesahpr ldfpfsqanp amsptqtsqt
      541 lirrahfkhh dnrgdlperg chrnpqfrrt asfhemkkar pfrersmstl tprqtplyns
      601 rtrtwdqgfe drmrpksrnt npacekldqp hstvpgcepq ghsakchhrs gppvkkldli
      661 tdrqpagqek avdkpepnrs krgpspnprg vwrketglag kdnsqrglsv spaqhrrdkc
      721 qsfpldpefa fydnttfglt eaeqqmidlp gyfgsneede tstlsveklv i
//
LOCUS       XP_053923625             521 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053923625
VERSION     XP_053923625.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067650.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..521
                     /product="phosphatidylinositol 3,4,5-trisphosphate
                     3-phosphatase TPTE2 isoform X1"
                     /calculated_mol_wt=59791
     Region          88..>192
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          198..374
                     /region_name="PTP_VSP_TPTE"
                     /note="protein tyrosine phosphatase-like catalytic domain
                     of voltage-sensitive phosphatase/transmembrane phosphatase
                     with tensin homology; cd14510"
                     /db_xref="CDD:350360"
     Region          383..520
                     /region_name="PTEN_C2"
                     /note="C2 domain of PTEN tumour-suppressor protein;
                     pfam10409"
                     /db_xref="CDD:463081"
     CDS             1..521
                     /gene="LOC104066137"
                     /coded_by="XM_054067650.1:531..2096"
                     /db_xref="GeneID:104066137"
ORIGIN      
        1 mhaeprrsps srnqasgatt gkmttvsspt akeptieidd grdednepds csnafrrkis
       61 pfvmsfgfri fgvalivvdi ivfivdltin ekergvreil egvslaialf flvdvllrvf
      121 vegfrnyfqs klnildafiv vgtllinmty cfsdlaaldq iprmvtflrv lrivilirvf
      181 rlasqkkqle vvtrrmvsen krrymkdgfd ldltyvtdri iamsfpssgk qsfyrnpike
      241 varfldtkha dhykvynlcs ekgydpkyfh yrverifidd hnvpalrdml kftasvrewm
      301 sqdekniiai hckggkgrtg tmictwlids dqfesakesl dyfgerrtdr ststkfqgve
      361 tpsqsryvgy yeilknkynl klpperqlki knlkihsihg vgkgdgtdlk vqiivrkqiv
      421 lecacasqgn cklffdsesd svviglkdsp visgdvkvrf escsdlpkgy dncpfffwfn
      481 tsfiennrly lprneldnph ksktwkvyse rfavevnfte p
//
LOCUS       XP_053924365             511 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2
            isoform X2 [Cuculus canorus].
ACCESSION   XP_053924365
VERSION     XP_053924365.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068390.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..511
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..511
                     /product="phosphatidylinositol 3,4,5-trisphosphate
                     3-phosphatase TPTE2 isoform X2"
                     /calculated_mol_wt=58802
     Region          78..>182
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          188..364
                     /region_name="PTP_VSP_TPTE"
                     /note="protein tyrosine phosphatase-like catalytic domain
                     of voltage-sensitive phosphatase/transmembrane phosphatase
                     with tensin homology; cd14510"
                     /db_xref="CDD:350360"
     Region          373..510
                     /region_name="PTEN_C2"
                     /note="C2 domain of PTEN tumour-suppressor protein;
                     pfam10409"
                     /db_xref="CDD:463081"
     CDS             1..511
                     /gene="LOC104066137"
                     /coded_by="XM_054068390.1:166..1701"
                     /db_xref="GeneID:104066137"
ORIGIN      
        1 mttvryeqga elaevcgspt akeptieidd grdednepds csnafrrkis pfvmsfgfri
       61 fgvalivvdi ivfivdltin ekergvreil egvslaialf flvdvllrvf vegfrnyfqs
      121 klnildafiv vgtllinmty cfsdlaaldq iprmvtflrv lrivilirvf rlasqkkqle
      181 vvtrrmvsen krrymkdgfd ldltyvtdri iamsfpssgk qsfyrnpike varfldtkha
      241 dhykvynlcs ekgydpkyfh yrverifidd hnvpalrdml kftasvrewm sqdekniiai
      301 hckggkgrtg tmictwlids dqfesakesl dyfgerrtdr ststkfqgve tpsqsryvgy
      361 yeilknkynl klpperqlki knlkihsihg vgkgdgtdlk vqiivrkqiv lecacasqgn
      421 cklffdsesd svviglkdsp visgdvkvrf escsdlpkgy dncpfffwfn tsfiennrly
      481 lprneldnph ksktwkvyse rfavevnfte p
//
LOCUS       XP_053925078             499 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2
            isoform X3 [Cuculus canorus].
ACCESSION   XP_053925078
VERSION     XP_053925078.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069103.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..499
                     /product="phosphatidylinositol 3,4,5-trisphosphate
                     3-phosphatase TPTE2 isoform X3"
                     /calculated_mol_wt=57482
     Region          66..>170
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          176..352
                     /region_name="PTP_VSP_TPTE"
                     /note="protein tyrosine phosphatase-like catalytic domain
                     of voltage-sensitive phosphatase/transmembrane phosphatase
                     with tensin homology; cd14510"
                     /db_xref="CDD:350360"
     Region          361..498
                     /region_name="PTEN_C2"
                     /note="C2 domain of PTEN tumour-suppressor protein;
                     pfam10409"
                     /db_xref="CDD:463081"
     CDS             1..499
                     /gene="LOC104066137"
                     /coded_by="XM_054069103.1:166..1665"
                     /db_xref="GeneID:104066137"
ORIGIN      
        1 mttvssptak eptieiddgr dednepdscs nafrrkispf vmsfgfrifg valivvdiiv
       61 fivdltinek ergvreileg vslaialffl vdvllrvfve gfrnyfqskl nildafivvg
      121 tllinmtycf sdlaaldqip rmvtflrvlr ivilirvfrl asqkkqlevv trrmvsenkr
      181 rymkdgfdld ltyvtdriia msfpssgkqs fyrnpikeva rfldtkhadh ykvynlcsek
      241 gydpkyfhyr verifiddhn vpalrdmlkf tasvrewmsq dekniiaihc kggkgrtgtm
      301 ictwlidsdq fesakesldy fgerrtdrst stkfqgvetp sqsryvgyye ilknkynlkl
      361 pperqlkikn lkihsihgvg kgdgtdlkvq iivrkqivle cacasqgnck lffdsesdsv
      421 viglkdspvi sgdvkvrfes csdlpkgydn cpfffwfnts fiennrlylp rneldnphks
      481 ktwkvyserf avevnftep
//
LOCUS       XP_053925850             533 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2
            isoform X4 [Cuculus canorus].
ACCESSION   XP_053925850
VERSION     XP_053925850.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069875.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..533
                     /product="phosphatidylinositol 3,4,5-trisphosphate
                     3-phosphatase TPTE2 isoform X4"
                     /calculated_mol_wt=61110
     Region          100..>204
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          210..386
                     /region_name="PTP_VSP_TPTE"
                     /note="protein tyrosine phosphatase-like catalytic domain
                     of voltage-sensitive phosphatase/transmembrane phosphatase
                     with tensin homology; cd14510"
                     /db_xref="CDD:350360"
     Region          395..532
                     /region_name="PTEN_C2"
                     /note="C2 domain of PTEN tumour-suppressor protein;
                     pfam10409"
                     /db_xref="CDD:463081"
     CDS             1..533
                     /gene="LOC104066137"
                     /coded_by="XM_054069875.1:210..1811"
                     /db_xref="GeneID:104066137"
ORIGIN      
        1 mhaeprrsps srnqasgatt gkmttvryeq gaelaevcgs ptakeptiei ddgrdednep
       61 dscsnafrrk ispfvmsfgf rifgvalivv diivfivdlt inekergvre ilegvslaia
      121 lfflvdvllr vfvegfrnyf qsklnildaf ivvgtllinm tycfsdlaal dqiprmvtfl
      181 rvlrivilir vfrlasqkkq levvtrrmvs enkrrymkdg fdldltyvtd riiamsfpss
      241 gkqsfyrnpi kevarfldtk hadhykvynl csekgydpky fhyrverifi ddhnvpalrd
      301 mlkftasvre wmsqdeknii aihckggkgr tgtmictwli dsdqfesake sldyfgerrt
      361 drststkfqg vetpsqsryv gyyeilknky nlklpperql kiknlkihsi hgvgkgdgtd
      421 lkvqiivrkq ivlecacasq gncklffdse sdsvviglkd spvisgdvkv rfescsdlpk
      481 gydncpfffw fntsfiennr lylprneldn phksktwkvy serfavevnf tep
//
LOCUS       XP_053926957             337 aa            linear   VRT 09-MAR-2023
DEFINITION  fibrinogen-like protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053926957
VERSION     XP_053926957.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070982.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..337
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..337
                     /product="fibrinogen-like protein 1 isoform X1"
                     /calculated_mol_wt=39098
     Region          95..319
                     /region_name="FReD"
                     /note="Fibrinogen-related domains (FReDs); C terminal
                     globular domain of fibrinogen. Fibrinogen is involved in
                     blood clotting, being activated by thrombin to assemble
                     into fibrin clots. The N-termini of 2 times 3 chains come
                     together to form a globular...; cd00087"
                     /db_xref="CDD:238040"
     Site            215
                     /site_type="other"
                     /note="gamma-gamma dimer interface [polypeptide binding]"
                     /db_xref="CDD:238040"
     Site            order(254,256,258)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238040"
     Site            order(263,266..267,276..277)
                     /site_type="active"
                     /note="polymerization pocket [active]"
                     /db_xref="CDD:238040"
     CDS             1..337
                     /gene="LOC104066170"
                     /coded_by="XM_054070982.1:2481..3494"
                     /db_xref="GeneID:104066170"
ORIGIN      
        1 mdvmmlwfll llllvsfvsp aprfsdkdic lidnnklrqr lkqlqdllyl yelqlkdiqe
       61 ntyhrtksgl fsgnrtvqhe mllpttsgnl ivydqdcsav ynrkktkngy yrirpradre
      121 pflaycdmsd gggwtviqrr sngkenfnrk wddyklgfgk fqgkndeywl gndhiydlls
      181 rgemslkidl vdwdgerrya vyenfqlane qdnyrlwfgt ysgnagdals ggsnfevqws
      241 ashrgmqftt sdkdhdryla gncalenmgg wwfnrchavn lngqyyrrgr ysgshdngvv
      301 wstwhgvwys lkysamkira pffvdgesgd gensqgs
//
LOCUS       XP_053927753             337 aa            linear   VRT 09-MAR-2023
DEFINITION  fibrinogen-like protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053927753
VERSION     XP_053927753.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071778.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..337
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..337
                     /product="fibrinogen-like protein 1 isoform X1"
                     /calculated_mol_wt=39098
     Region          95..319
                     /region_name="FReD"
                     /note="Fibrinogen-related domains (FReDs); C terminal
                     globular domain of fibrinogen. Fibrinogen is involved in
                     blood clotting, being activated by thrombin to assemble
                     into fibrin clots. The N-termini of 2 times 3 chains come
                     together to form a globular...; cd00087"
                     /db_xref="CDD:238040"
     Site            215
                     /site_type="other"
                     /note="gamma-gamma dimer interface [polypeptide binding]"
                     /db_xref="CDD:238040"
     Site            order(254,256,258)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238040"
     Site            order(263,266..267,276..277)
                     /site_type="active"
                     /note="polymerization pocket [active]"
                     /db_xref="CDD:238040"
     CDS             1..337
                     /gene="LOC104066170"
                     /coded_by="XM_054071778.1:544..1557"
                     /db_xref="GeneID:104066170"
ORIGIN      
        1 mdvmmlwfll llllvsfvsp aprfsdkdic lidnnklrqr lkqlqdllyl yelqlkdiqe
       61 ntyhrtksgl fsgnrtvqhe mllpttsgnl ivydqdcsav ynrkktkngy yrirpradre
      121 pflaycdmsd gggwtviqrr sngkenfnrk wddyklgfgk fqgkndeywl gndhiydlls
      181 rgemslkidl vdwdgerrya vyenfqlane qdnyrlwfgt ysgnagdals ggsnfevqws
      241 ashrgmqftt sdkdhdryla gncalenmgg wwfnrchavn lngqyyrrgr ysgshdngvv
      301 wstwhgvwys lkysamkira pffvdgesgd gensqgs
//
LOCUS       XP_053928465             337 aa            linear   VRT 09-MAR-2023
DEFINITION  fibrinogen-like protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053928465
VERSION     XP_053928465.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072490.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..337
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..337
                     /product="fibrinogen-like protein 1 isoform X1"
                     /calculated_mol_wt=39098
     Region          95..319
                     /region_name="FReD"
                     /note="Fibrinogen-related domains (FReDs); C terminal
                     globular domain of fibrinogen. Fibrinogen is involved in
                     blood clotting, being activated by thrombin to assemble
                     into fibrin clots. The N-termini of 2 times 3 chains come
                     together to form a globular...; cd00087"
                     /db_xref="CDD:238040"
     Site            215
                     /site_type="other"
                     /note="gamma-gamma dimer interface [polypeptide binding]"
                     /db_xref="CDD:238040"
     Site            order(254,256,258)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238040"
     Site            order(263,266..267,276..277)
                     /site_type="active"
                     /note="polymerization pocket [active]"
                     /db_xref="CDD:238040"
     CDS             1..337
                     /gene="LOC104066170"
                     /coded_by="XM_054072490.1:2683..3696"
                     /db_xref="GeneID:104066170"
ORIGIN      
        1 mdvmmlwfll llllvsfvsp aprfsdkdic lidnnklrqr lkqlqdllyl yelqlkdiqe
       61 ntyhrtksgl fsgnrtvqhe mllpttsgnl ivydqdcsav ynrkktkngy yrirpradre
      121 pflaycdmsd gggwtviqrr sngkenfnrk wddyklgfgk fqgkndeywl gndhiydlls
      181 rgemslkidl vdwdgerrya vyenfqlane qdnyrlwfgt ysgnagdals ggsnfevqws
      241 ashrgmqftt sdkdhdryla gncalenmgg wwfnrchavn lngqyyrrgr ysgshdngvv
      301 wstwhgvwys lkysamkira pffvdgesgd gensqgs
//
LOCUS       XP_053929252             337 aa            linear   VRT 09-MAR-2023
DEFINITION  fibrinogen-like protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053929252
VERSION     XP_053929252.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073277.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..337
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..337
                     /product="fibrinogen-like protein 1 isoform X1"
                     /calculated_mol_wt=39098
     Region          95..319
                     /region_name="FReD"
                     /note="Fibrinogen-related domains (FReDs); C terminal
                     globular domain of fibrinogen. Fibrinogen is involved in
                     blood clotting, being activated by thrombin to assemble
                     into fibrin clots. The N-termini of 2 times 3 chains come
                     together to form a globular...; cd00087"
                     /db_xref="CDD:238040"
     Site            215
                     /site_type="other"
                     /note="gamma-gamma dimer interface [polypeptide binding]"
                     /db_xref="CDD:238040"
     Site            order(254,256,258)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238040"
     Site            order(263,266..267,276..277)
                     /site_type="active"
                     /note="polymerization pocket [active]"
                     /db_xref="CDD:238040"
     CDS             1..337
                     /gene="LOC104066170"
                     /coded_by="XM_054073277.1:2652..3665"
                     /db_xref="GeneID:104066170"
ORIGIN      
        1 mdvmmlwfll llllvsfvsp aprfsdkdic lidnnklrqr lkqlqdllyl yelqlkdiqe
       61 ntyhrtksgl fsgnrtvqhe mllpttsgnl ivydqdcsav ynrkktkngy yrirpradre
      121 pflaycdmsd gggwtviqrr sngkenfnrk wddyklgfgk fqgkndeywl gndhiydlls
      181 rgemslkidl vdwdgerrya vyenfqlane qdnyrlwfgt ysgnagdals ggsnfevqws
      241 ashrgmqftt sdkdhdryla gncalenmgg wwfnrchavn lngqyyrrgr ysgshdngvv
      301 wstwhgvwys lkysamkira pffvdgesgd gensqgs
//
LOCUS       XP_053930019             318 aa            linear   VRT 09-MAR-2023
DEFINITION  fibrinogen-like protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053930019
VERSION     XP_053930019.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074044.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="fibrinogen-like protein 1 isoform X2"
                     /calculated_mol_wt=36807
     Region          95..300
                     /region_name="FReD"
                     /note="Fibrinogen-related domains (FReDs); C terminal
                     globular domain of fibrinogen. Fibrinogen is involved in
                     blood clotting, being activated by thrombin to assemble
                     into fibrin clots. The N-termini of 2 times 3 chains come
                     together to form a globular...; cd00087"
                     /db_xref="CDD:238040"
     Site            196
                     /site_type="other"
                     /note="gamma-gamma dimer interface [polypeptide binding]"
                     /db_xref="CDD:238040"
     Site            order(235,237,239)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238040"
     Site            order(244,247..248,257..258)
                     /site_type="active"
                     /note="polymerization pocket [active]"
                     /db_xref="CDD:238040"
     CDS             1..318
                     /gene="LOC104066170"
                     /coded_by="XM_054074044.1:2741..3697"
                     /db_xref="GeneID:104066170"
ORIGIN      
        1 mdvmmlwfll llllvsfvsp aprfsdkdic lidnnklrqr lkqlqdllyl yelqlkdiqe
       61 ntyhrtksgl fsgnrtvqhe mllpttsgnl ivydqdcsav ynrkktkngy yrirpradre
      121 pflaycdmsd gggwtviqrr sngkenfnrk wddyklgfgk fqgemslkid lvdwdgerry
      181 avyenfqlan eqdnyrlwfg tysgnagdal sggsnfevqw sashrgmqft tsdkdhdryl
      241 agncalenmg gwwfnrchav nlngqyyrrg rysgshdngv vwstwhgvwy slkysamkir
      301 apffvdgesg dgensqgs
//
LOCUS       XP_053930774             289 aa            linear   VRT 09-MAR-2023
DEFINITION  fibrinogen-like protein 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053930774
VERSION     XP_053930774.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074799.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..289
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..289
                     /product="fibrinogen-like protein 1 isoform X3"
                     /calculated_mol_wt=33633
     Region          95..>275
                     /region_name="FReD"
                     /note="Fibrinogen-related domains (FReDs); C terminal
                     globular domain of fibrinogen. Fibrinogen is involved in
                     blood clotting, being activated by thrombin to assemble
                     into fibrin clots. The N-termini of 2 times 3 chains come
                     together to form a globular...; cd00087"
                     /db_xref="CDD:238040"
     Site            215
                     /site_type="other"
                     /note="gamma-gamma dimer interface [polypeptide binding]"
                     /db_xref="CDD:238040"
     Site            order(254,256,258)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238040"
     CDS             1..289
                     /gene="LOC104066170"
                     /coded_by="XM_054074799.1:2739..3608"
                     /db_xref="GeneID:104066170"
ORIGIN      
        1 mdvmmlwfll llllvsfvsp aprfsdkdic lidnnklrqr lkqlqdllyl yelqlkdiqe
       61 ntyhrtksgl fsgnrtvqhe mllpttsgnl ivydqdcsav ynrkktkngy yrirpradre
      121 pflaycdmsd gggwtviqrr sngkenfnrk wddyklgfgk fqgkndeywl gndhiydlls
      181 rgemslkidl vdwdgerrya vyenfqlane qdnyrlwfgt ysgnagdals ggsnfevqws
      241 ashrgmqftt sdkdhdryla gncalenmgg wwfnrygkql ihlgcigyg
//
LOCUS       XP_053931531             257 aa            linear   VRT 09-MAR-2023
DEFINITION  fibrinogen-like protein 1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931531
VERSION     XP_053931531.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075556.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..257
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..257
                     /product="fibrinogen-like protein 1 isoform X4"
                     /calculated_mol_wt=29560
     Region          15..239
                     /region_name="FReD"
                     /note="Fibrinogen-related domains (FReDs); C terminal
                     globular domain of fibrinogen. Fibrinogen is involved in
                     blood clotting, being activated by thrombin to assemble
                     into fibrin clots. The N-termini of 2 times 3 chains come
                     together to form a globular...; cd00087"
                     /db_xref="CDD:238040"
     Site            135
                     /site_type="other"
                     /note="gamma-gamma dimer interface [polypeptide binding]"
                     /db_xref="CDD:238040"
     Site            order(174,176,178)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238040"
     Site            order(183,186..187,196..197)
                     /site_type="active"
                     /note="polymerization pocket [active]"
                     /db_xref="CDD:238040"
     CDS             1..257
                     /gene="LOC104066170"
                     /coded_by="XM_054075556.1:2882..3655"
                     /db_xref="GeneID:104066170"
ORIGIN      
        1 mllpttsgnl ivydqdcsav ynrkktkngy yrirpradre pflaycdmsd gggwtviqrr
       61 sngkenfnrk wddyklgfgk fqgkndeywl gndhiydlls rgemslkidl vdwdgerrya
      121 vyenfqlane qdnyrlwfgt ysgnagdals ggsnfevqws ashrgmqftt sdkdhdryla
      181 gncalenmgg wwfnrchavn lngqyyrrgr ysgshdngvv wstwhgvwys lkysamkira
      241 pffvdgesgd gensqgs
//
LOCUS       XP_053937835             641 aa            linear   VRT 09-MAR-2023
DEFINITION  calpain-5 [Cuculus canorus].
ACCESSION   XP_053937835
VERSION     XP_053937835.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081860.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..641
                     /product="calpain-5"
                     /calculated_mol_wt=73231
     Region          27..340
                     /region_name="Peptidase_C2"
                     /note="Calpain family cysteine protease; pfam00648"
                     /db_xref="CDD:459889"
     Region          358..487
                     /region_name="Calpain_III"
                     /note="Calpain large subunit, domain III; pfam01067"
                     /db_xref="CDD:460050"
     Region          514..639
                     /region_name="C2_Calpain"
                     /note="C2 domain present in Calpain proteins; cd04046"
                     /db_xref="CDD:176011"
     CDS             1..641
                     /gene="CAPN5"
                     /coded_by="XM_054081860.1:133..2058"
                     /db_xref="GeneID:104064135"
ORIGIN      
        1 mfssvkpyen qryaslkkec qrrkqlfedp lfpanddslf yksriqgiqw krpkeicndp
       61 hlfvdgissh dlhqgqvgnc wfvaacssla sreslwqkvi pdwkeqewnp ekpesyagif
      121 hfqfwrfgqw ldvviddrlp tlhnqliych snsknefwca lvekayakls gcyealdggn
      181 tadalvdftg gvsepidlte gdyiadeakr nllfervlkv hnrggliscs ikatsaadme
      241 arlacglvkg hayavtdvrk vrlghgllsf fksekldmir mrnpwgerew ngpwsdtsee
      301 wqkvsksere kmgmtveddg efwmtfedfc kyftdiikcr lintsylsih ktweeavlrg
      361 awtrnndplk nrcggcinhk dtflqnpqyv fdvkktedev lislqqkpkr tsrkegkgen
      421 laigfdihkv elnrnyrmht lqqkvassiy insrsvflrt dlkegryvii pttfdpghvg
      481 efllriftdv psdcreltld epphtcwsgm cgypqvvsqi hvlgaaglkn qdsqggadpy
      541 viikcegqkv rspvkkntvs pefdvkglfy rkkpgqpiiv qiwnhnlisd eflgqvvltg
      601 dpsdrqsvht lhlqdkgnrr sndlsgtiav rllssniltn v
//
LOCUS       XP_053938989             267 aa            linear   VRT 09-MAR-2023
DEFINITION  alkaline ceramidase 3 [Cuculus canorus].
ACCESSION   XP_053938989
VERSION     XP_053938989.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083014.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..267
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..267
                     /product="alkaline ceramidase 3"
                     /calculated_mol_wt=31086
     Region          12..263
                     /region_name="Ceramidase"
                     /note="pfam05875"
                     /db_xref="CDD:461766"
     CDS             1..267
                     /gene="ACER3"
                     /coded_by="XM_054083014.1:55..858"
                     /db_xref="GeneID:104064213"
ORIGIN      
        1 mapaadregy wgpptstlew ceenyavsyh iaefwntvsn lifilppiyg aiqtykdgle
       61 krylaaylcl tavglgswcf hmtlkyemql ldelpmiysc cvfvyclyec fkykntvnyp
      121 llfllitysf vvsivylnlk epvfhqimyg tlvsiivlrs vyivlwvypw lrglgytslt
      181 vflmgfflwn vdnlfcdklr alrekmppvv gavtqfhaww hiltglgsyl hillslytrt
      241 lflkhrpkvk fvfgiwpvll veppkkl
//
LOCUS       XP_053940134             159 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory marker protein [Cuculus canorus].
ACCESSION   XP_053940134
VERSION     XP_053940134.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084159.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..159
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..159
                     /product="olfactory marker protein"
                     /calculated_mol_wt=18316
     Region          9..158
                     /region_name="Olfactory_mark"
                     /note="Olfactory marker protein; pfam06554"
                     /db_xref="CDD:399511"
     CDS             1..159
                     /gene="OMP"
                     /coded_by="XM_054084159.1:1631..2110"
                     /db_xref="GeneID:104064134"
ORIGIN      
        1 maagagmlel pfirdeqltr cmrlrfqslq qkklrpqdge kllhpnehiy rvdfiqqhnl
       61 rflrwsiqle rpgkvtvtgt sqhwtpdltn lmnrqllepv gifwkkpgak evecneadaq
      121 efgeriaela qirkvmyfll tfadglepaq lkgsvifka
//
LOCUS       XP_009554681             238 aa            linear   VRT 09-MAR-2023
DEFINITION  tetraspanin-7 [Cuculus canorus].
ACCESSION   XP_009554681
VERSION     XP_009554681.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556386.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554681.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..238
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..238
                     /product="tetraspanin-7"
                     /calculated_mol_wt=25437
     Region          4..224
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          99..199
                     /region_name="tetraspanin_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL). Tetraspanins are trans-membrane
                     proteins with 4 trans-membrane segments. Both the N- and
                     C-termini lie on the intracellular side of the membrane.
                     This alignment model spans the...; cl02781"
                     /db_xref="CDD:351888"
     Site            order(100,105,109,111..112,115,129,132..133,136..137)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239401"
     CDS             1..238
                     /gene="LOC104055276"
                     /coded_by="XM_009556386.2:270..986"
                     /db_xref="GeneID:104055276"
ORIGIN      
        1 mtvlklslma fsfvfwaagl tmfiiglwak vslgtylals andypsapai llatgiavli
       61 wgflgcfsaa tehqgllray stfltvvlaa gltaglsall yrqniargfh eglrqallty
      121 gedegmadal dalqralscc gvesyhdwlt spwgleqngs vpfsccrvrr gcqhslpkph
      181 glhhegcfsk vsvfvssnmf yiatsalgla llqligivls cllatrvpth llgiatpr
//
LOCUS       XP_053942436              97 aa            linear   VRT 09-MAR-2023
DEFINITION  cystatin-A-like [Cuculus canorus].
ACCESSION   XP_053942436
VERSION     XP_053942436.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086461.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..97
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..97
                     /product="cystatin-A-like"
                     /calculated_mol_wt=11004
     Region          4..81
                     /region_name="Cystatin"
                     /note="Cystatin domain; pfam00031"
                     /db_xref="CDD:425431"
     Site            order(4,46..48,50)
                     /site_type="active"
                     /note="putative proteinase inhibition site [active]"
                     /db_xref="CDD:238002"
     CDS             1..97
                     /gene="LOC128854265"
                     /coded_by="XM_054086461.1:49..342"
                     /db_xref="GeneID:128854265"
ORIGIN      
        1 mmpggftdpr patpeiqqia nqvkpqleke vnmtypifna veyrsqvvag tnycikvqvs
       61 ddeyahllvf ralpqedqgp klvrywtgkt rydplec
//
LOCUS       XP_053943580             480 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA-binding protein RFX8 isoform X1 [Cuculus canorus].
ACCESSION   XP_053943580
VERSION     XP_053943580.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087605.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..480
                     /product="DNA-binding protein RFX8 isoform X1"
                     /calculated_mol_wt=55278
     Region          <6..36
                     /region_name="RFX_DNA_binding"
                     /note="RFX DNA-binding domain; pfam02257"
                     /db_xref="CDD:460512"
     CDS             1..480
                     /gene="RFX8"
                     /coded_by="XM_054087605.1:131..1573"
                     /db_xref="GeneID:104056692"
ORIGIN      
        1 mpkrhlvrlv fpglrtrrlg krgstryhyd giaikssssf yarycsllse nnhhrtstpg
       61 eassstqqls tyaitsrnvc gsgdapgyrs nsqkirtset lhcfptviyl kteqetpwpe
      121 lssyclweqd mgkkypyemi alianeyysh cqdilhmvrn sqfnkverci msfwrslqpe
      181 gialmclpgv cklfksydrq lfkeienilf hdfleevsiq hvksvtlfse niqvwllnal
      241 eefplliqts kseevtlfik rlrrkidlss maetmrkiln snnkvtalrs nlhaiinqgl
      301 lempgnifet ncknpeelqi digvkclndl lpllapytdi rvllscmssn lqafvikpsr
      361 skeefrklas dfqlrwnfll savskamtln cghsfghwhl fnlllmdyva hiflsyteee
      421 denfcfamqn eppvlwlygp sntysyfaee qhqadsprta ftavtlsqnn fgltntfpef
//
LOCUS       XP_053944284             452 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA-binding protein RFX8 isoform X2 [Cuculus canorus].
ACCESSION   XP_053944284
VERSION     XP_053944284.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088309.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..452
                     /product="DNA-binding protein RFX8 isoform X2"
                     /calculated_mol_wt=51316
     Region          <6..36
                     /region_name="RFX_DNA_binding"
                     /note="RFX DNA-binding domain; pfam02257"
                     /db_xref="CDD:460512"
     CDS             1..452
                     /gene="RFX8"
                     /coded_by="XM_054088309.1:131..1489"
                     /db_xref="GeneID:104056692"
ORIGIN      
        1 mpkrhlvrlv fpglrtrrlg krgstryhyd giaikssssf yarycsllse nnhhrtstpg
       61 eassstqqls tyaitsrnvc gsgdapgyrs nsqkirtset lhcfptviyl kteqetpwpe
      121 lssyclweqd mgkkypyemi alianeyysh cqdilhmvrn sqfnkverci msfwrslqpe
      181 gialmclpgv cklfksydrq lfkeienilf hdfleevsiq hvksvtlfse niqvwllnal
      241 eefplliqts kseevtlfik rlrrkidlss maetmrkiln snnkvtalrs nlhaiinqgl
      301 lempgnifet ncknpeelqi digvkclndl lpllapytdi rvllscmssn lqafvikpsr
      361 skeefrklas dfqlrwnfll savskamtln cghsfaqplh gwcrsvirgt vqlvfckaas
      421 sknapsvran gsstalsapp slqqmclyip ps
//
LOCUS       XP_053905927            1086 aa            linear   VRT 09-MAR-2023
DEFINITION  antigen WC1.1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053905927
VERSION     XP_053905927.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049952.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1086
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1086
                     /product="antigen WC1.1 isoform X1"
                     /calculated_mol_wt=117937
     Region          28..128
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          133..231
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          237..336
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          342..440
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          451..546
                     /region_name="SRCR"
                     /note="Scavenger receptor cysteine-rich domain; pfam00530"
                     /db_xref="CDD:459844"
     Region          551..651
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          656..745
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          782..882
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     CDS             1..1086
                     /gene="LOC104064387"
                     /coded_by="XM_054049952.1:1056..4316"
                     /db_xref="GeneID:104064387"
ORIGIN      
        1 mttkgylstp vlwllllaiq vsqgadelrl sngtglcsgr vevkheeqwg tvcdgdwtie
       61 daevvckqlq cgsavqalnr apfgegsgpt wlyrvdcrgd esalwncsht gwgsftcphy
      121 fdtgvicsgf sqlrltggdt acsgrlevkq dqtwaavcfs hidfktasvl cnelecgqav
      181 dvlrgthfgd gheliwqeef hcvgnethla hcprmlhrsk tcshdatvvc sgyggyrlan
      241 gsttcsgrve llhggtwgtl cdylwdlpta nslchqldcg vallipdgqf fgkgnasvwn
      301 gtfsckkngs hlrncpvtvl ghdecpagkd arvvcsgcpg grlvngttcs giveirhgdt
      361 wgrlchthwn lkaanvlcnq lncgyaksiq tgdrsvdgng hvwrdafhce gtesclwdcd
      421 qvtlgnptcs areaatvics gvaeslrlsg geshcdgrve islygtwsrv ldddwdikda
      481 hvvcrqlqcg iaekayylpr sergfgpigl rsvqcagnet qlllckssht hteprgvaed
      541 vgvicsgsrq irlvngtkrc agrvelynyg iwgtvcddnw dlsdanvvck qlgcgqaika
      601 fasahygegs gqiwlddvnc tgaesdlwac ssrawgqhnc qhkedagvlc seflalrlvd
      661 gndcagrlev fyngtwgsic snrmsqitai tvckhlncgd ggeiatdfky grgsgptwld
      721 hiecteqhss lwhcqsdpwh pqscdnraee thisctgrke attpatfvec pnstscsdre
      781 klrviggghg csgrveiwhq gswgtvcdds wdmadadvvc rqlgcgpavs alseaafgeg
      841 tgpiwlekvh ckgtelsfwe cpakplfgka cdhkedaavd csgvtettas ptradlprrp
      901 atdttrmsmp iiiciilgal lclvlailag qirsaraqqr gsrlpydpfs eavyeeinyd
      961 lmrekqgmtg ltdtyseisk tkvqfysrds deengpgatq evsllpgnnl edgyddvtea
     1021 pgpkdafrse kneheitaip eesdrnkdsq tdwssnvsgn ktskaerdss pafedtgydd
     1081 veelgh
//
LOCUS       XP_053906693            1086 aa            linear   VRT 09-MAR-2023
DEFINITION  antigen WC1.1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053906693
VERSION     XP_053906693.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050718.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1086
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1086
                     /product="antigen WC1.1 isoform X1"
                     /calculated_mol_wt=117937
     Region          28..128
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          133..231
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          237..336
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          342..440
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          451..546
                     /region_name="SRCR"
                     /note="Scavenger receptor cysteine-rich domain; pfam00530"
                     /db_xref="CDD:459844"
     Region          551..651
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          656..745
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          782..882
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     CDS             1..1086
                     /gene="LOC104064387"
                     /coded_by="XM_054050718.1:893..4153"
                     /db_xref="GeneID:104064387"
ORIGIN      
        1 mttkgylstp vlwllllaiq vsqgadelrl sngtglcsgr vevkheeqwg tvcdgdwtie
       61 daevvckqlq cgsavqalnr apfgegsgpt wlyrvdcrgd esalwncsht gwgsftcphy
      121 fdtgvicsgf sqlrltggdt acsgrlevkq dqtwaavcfs hidfktasvl cnelecgqav
      181 dvlrgthfgd gheliwqeef hcvgnethla hcprmlhrsk tcshdatvvc sgyggyrlan
      241 gsttcsgrve llhggtwgtl cdylwdlpta nslchqldcg vallipdgqf fgkgnasvwn
      301 gtfsckkngs hlrncpvtvl ghdecpagkd arvvcsgcpg grlvngttcs giveirhgdt
      361 wgrlchthwn lkaanvlcnq lncgyaksiq tgdrsvdgng hvwrdafhce gtesclwdcd
      421 qvtlgnptcs areaatvics gvaeslrlsg geshcdgrve islygtwsrv ldddwdikda
      481 hvvcrqlqcg iaekayylpr sergfgpigl rsvqcagnet qlllckssht hteprgvaed
      541 vgvicsgsrq irlvngtkrc agrvelynyg iwgtvcddnw dlsdanvvck qlgcgqaika
      601 fasahygegs gqiwlddvnc tgaesdlwac ssrawgqhnc qhkedagvlc seflalrlvd
      661 gndcagrlev fyngtwgsic snrmsqitai tvckhlncgd ggeiatdfky grgsgptwld
      721 hiecteqhss lwhcqsdpwh pqscdnraee thisctgrke attpatfvec pnstscsdre
      781 klrviggghg csgrveiwhq gswgtvcdds wdmadadvvc rqlgcgpavs alseaafgeg
      841 tgpiwlekvh ckgtelsfwe cpakplfgka cdhkedaavd csgvtettas ptradlprrp
      901 atdttrmsmp iiiciilgal lclvlailag qirsaraqqr gsrlpydpfs eavyeeinyd
      961 lmrekqgmtg ltdtyseisk tkvqfysrds deengpgatq evsllpgnnl edgyddvtea
     1021 pgpkdafrse kneheitaip eesdrnkdsq tdwssnvsgn ktskaerdss pafedtgydd
     1081 veelgh
//
LOCUS       XP_053907479            1058 aa            linear   VRT 09-MAR-2023
DEFINITION  antigen WC1.1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053907479
VERSION     XP_053907479.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051504.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1058
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1058
                     /product="antigen WC1.1 isoform X2"
                     /calculated_mol_wt=114802
     Region          28..128
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          133..231
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          237..336
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          342..440
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          451..546
                     /region_name="SRCR"
                     /note="Scavenger receptor cysteine-rich domain; pfam00530"
                     /db_xref="CDD:459844"
     Region          551..651
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          656..745
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          782..882
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     CDS             1..1058
                     /gene="LOC104064387"
                     /coded_by="XM_054051504.1:1212..4388"
                     /db_xref="GeneID:104064387"
ORIGIN      
        1 mttkgylstp vlwllllaiq vsqgadelrl sngtglcsgr vevkheeqwg tvcdgdwtie
       61 daevvckqlq cgsavqalnr apfgegsgpt wlyrvdcrgd esalwncsht gwgsftcphy
      121 fdtgvicsgf sqlrltggdt acsgrlevkq dqtwaavcfs hidfktasvl cnelecgqav
      181 dvlrgthfgd gheliwqeef hcvgnethla hcprmlhrsk tcshdatvvc sgyggyrlan
      241 gsttcsgrve llhggtwgtl cdylwdlpta nslchqldcg vallipdgqf fgkgnasvwn
      301 gtfsckkngs hlrncpvtvl ghdecpagkd arvvcsgcpg grlvngttcs giveirhgdt
      361 wgrlchthwn lkaanvlcnq lncgyaksiq tgdrsvdgng hvwrdafhce gtesclwdcd
      421 qvtlgnptcs areaatvics gvaeslrlsg geshcdgrve islygtwsrv ldddwdikda
      481 hvvcrqlqcg iaekayylpr sergfgpigl rsvqcagnet qlllckssht hteprgvaed
      541 vgvicsgsrq irlvngtkrc agrvelynyg iwgtvcddnw dlsdanvvck qlgcgqaika
      601 fasahygegs gqiwlddvnc tgaesdlwac ssrawgqhnc qhkedagvlc seflalrlvd
      661 gndcagrlev fyngtwgsic snrmsqitai tvckhlncgd ggeiatdfky grgsgptwld
      721 hiecteqhss lwhcqsdpwh pqscdnraee thisctgrke attpatfvec pnstscsdre
      781 klrviggghg csgrveiwhq gswgtvcdds wdmadadvvc rqlgcgpavs alseaafgeg
      841 tgpiwlekvh ckgtelsfwe cpakplfgka cdhkedaavd csgvtettas ptradlprrp
      901 atdttrmsmp iiiciilgal lclvlailag qirsaraqqr gsrlpydpfs eavyeeinyd
      961 lmrekqgmtg ltevsllpgn nledgyddvt eapgpkdafr sekneheita ipeesdrnkd
     1021 sqtdwssnvs gnktskaerd sspafedtgy ddveelgh
//
LOCUS       XP_053908600             683 aa            linear   VRT 09-MAR-2023
DEFINITION  rap1 GTPase-activating protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053908600
VERSION     XP_053908600.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052625.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..683
                     /product="rap1 GTPase-activating protein 1 isoform X1"
                     /calculated_mol_wt=76129
     Region          <1..17
                     /region_name="GoLoco"
                     /note="GoLoco motif; pfam02188"
                     /db_xref="CDD:460481"
     Region          213..392
                     /region_name="Rap_GAP"
                     /note="Rap/ran-GAP; pfam02145"
                     /db_xref="CDD:460463"
     CDS             1..683
                     /gene="LOC104064347"
                     /coded_by="XM_054052625.1:1415..3466"
                     /db_xref="GeneID:104064347"
ORIGIN      
        1 miekmqgsrl deqrcslpap lkteeeyipy psihevlqkg wpypliilpq fggywiegts
       61 hnisslnptl sdapfpwsgk vklesdptak lyrkhflgke hqnfyssdms lgylvlsvky
      121 eqsekqenlr lllrtrtgtk hdlipiscln efpnavqmak llcedvnver ffpvlypkas
      181 qlivafdehv isnnfkfgvi yqkpgqttee evfsnteesl gflefldflg dkiqlqdfrg
      241 frggldvtrg qtgtesvytn frgkeimfhv stklpftegd sqqlqrkrhi gndivaiifq
      301 destpfvpdm iasnflhayv vvqlthsttg dtlykvsvta rddvpffgpp lpnpaifrks
      361 aefrefllak linaeyscyr aekfakleer trsalleslf eelqlrsrsm mglpigeddk
      421 tengsggfle nfkrvirgrs qsldtmgism rkqqpatlps rpttaglals qsvtegpkai
      481 aasfalpgrs psrtrasrfh grrssaigie niqeeksrdt aeriqkvlds pgtffdlksd
      541 gssspsspef psrkskmlks qtsgycvmqp fscssssvss ccsglrenet seeendrelm
      601 csleglpkqd smiqsmwldd sdctpstsss pgsrllpsss vagstgkgkg sktdaqhhnp
      661 vsaliksffl tcteirmgek tvt
//
LOCUS       XP_053909272             683 aa            linear   VRT 09-MAR-2023
DEFINITION  rap1 GTPase-activating protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053909272
VERSION     XP_053909272.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053297.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..683
                     /product="rap1 GTPase-activating protein 1 isoform X1"
                     /calculated_mol_wt=76129
     Region          <1..17
                     /region_name="GoLoco"
                     /note="GoLoco motif; pfam02188"
                     /db_xref="CDD:460481"
     Region          213..392
                     /region_name="Rap_GAP"
                     /note="Rap/ran-GAP; pfam02145"
                     /db_xref="CDD:460463"
     CDS             1..683
                     /gene="LOC104064347"
                     /coded_by="XM_054053297.1:925..2976"
                     /db_xref="GeneID:104064347"
ORIGIN      
        1 miekmqgsrl deqrcslpap lkteeeyipy psihevlqkg wpypliilpq fggywiegts
       61 hnisslnptl sdapfpwsgk vklesdptak lyrkhflgke hqnfyssdms lgylvlsvky
      121 eqsekqenlr lllrtrtgtk hdlipiscln efpnavqmak llcedvnver ffpvlypkas
      181 qlivafdehv isnnfkfgvi yqkpgqttee evfsnteesl gflefldflg dkiqlqdfrg
      241 frggldvtrg qtgtesvytn frgkeimfhv stklpftegd sqqlqrkrhi gndivaiifq
      301 destpfvpdm iasnflhayv vvqlthsttg dtlykvsvta rddvpffgpp lpnpaifrks
      361 aefrefllak linaeyscyr aekfakleer trsalleslf eelqlrsrsm mglpigeddk
      421 tengsggfle nfkrvirgrs qsldtmgism rkqqpatlps rpttaglals qsvtegpkai
      481 aasfalpgrs psrtrasrfh grrssaigie niqeeksrdt aeriqkvlds pgtffdlksd
      541 gssspsspef psrkskmlks qtsgycvmqp fscssssvss ccsglrenet seeendrelm
      601 csleglpkqd smiqsmwldd sdctpstsss pgsrllpsss vagstgkgkg sktdaqhhnp
      661 vsaliksffl tcteirmgek tvt
//
LOCUS       XP_053910025             683 aa            linear   VRT 09-MAR-2023
DEFINITION  rap1 GTPase-activating protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053910025
VERSION     XP_053910025.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054050.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..683
                     /product="rap1 GTPase-activating protein 1 isoform X1"
                     /calculated_mol_wt=76129
     Region          <1..17
                     /region_name="GoLoco"
                     /note="GoLoco motif; pfam02188"
                     /db_xref="CDD:460481"
     Region          213..392
                     /region_name="Rap_GAP"
                     /note="Rap/ran-GAP; pfam02145"
                     /db_xref="CDD:460463"
     CDS             1..683
                     /gene="LOC104064347"
                     /coded_by="XM_054054050.1:287..2338"
                     /db_xref="GeneID:104064347"
ORIGIN      
        1 miekmqgsrl deqrcslpap lkteeeyipy psihevlqkg wpypliilpq fggywiegts
       61 hnisslnptl sdapfpwsgk vklesdptak lyrkhflgke hqnfyssdms lgylvlsvky
      121 eqsekqenlr lllrtrtgtk hdlipiscln efpnavqmak llcedvnver ffpvlypkas
      181 qlivafdehv isnnfkfgvi yqkpgqttee evfsnteesl gflefldflg dkiqlqdfrg
      241 frggldvtrg qtgtesvytn frgkeimfhv stklpftegd sqqlqrkrhi gndivaiifq
      301 destpfvpdm iasnflhayv vvqlthsttg dtlykvsvta rddvpffgpp lpnpaifrks
      361 aefrefllak linaeyscyr aekfakleer trsalleslf eelqlrsrsm mglpigeddk
      421 tengsggfle nfkrvirgrs qsldtmgism rkqqpatlps rpttaglals qsvtegpkai
      481 aasfalpgrs psrtrasrfh grrssaigie niqeeksrdt aeriqkvlds pgtffdlksd
      541 gssspsspef psrkskmlks qtsgycvmqp fscssssvss ccsglrenet seeendrelm
      601 csleglpkqd smiqsmwldd sdctpstsss pgsrllpsss vagstgkgkg sktdaqhhnp
      661 vsaliksffl tcteirmgek tvt
//
LOCUS       XP_053910776             682 aa            linear   VRT 09-MAR-2023
DEFINITION  rap1 GTPase-activating protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053910776
VERSION     XP_053910776.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054801.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..682
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..682
                     /product="rap1 GTPase-activating protein 1 isoform X2"
                     /calculated_mol_wt=76042
     Region          <1..17
                     /region_name="GoLoco"
                     /note="GoLoco motif; pfam02188"
                     /db_xref="CDD:460481"
     Region          213..392
                     /region_name="Rap_GAP"
                     /note="Rap/ran-GAP; pfam02145"
                     /db_xref="CDD:460463"
     CDS             1..682
                     /gene="LOC104064347"
                     /coded_by="XM_054054801.1:1415..3463"
                     /db_xref="GeneID:104064347"
ORIGIN      
        1 miekmqgsrl deqrcslpap lkteeeyipy psihevlqkg wpypliilpq fggywiegts
       61 hnisslnptl sdapfpwsgk vklesdptak lyrkhflgke hqnfyssdms lgylvlsvky
      121 eqsekqenlr lllrtrtgtk hdlipiscln efpnavqmak llcedvnver ffpvlypkas
      181 qlivafdehv isnnfkfgvi yqkpgqttee evfsnteesl gflefldflg dkiqlqdfrg
      241 frggldvtrg qtgtesvytn frgkeimfhv stklpftegd sqqlqrkrhi gndivaiifq
      301 destpfvpdm iasnflhayv vvqlthsttg dtlykvsvta rddvpffgpp lpnpaifrks
      361 aefrefllak linaeyscyr aekfakleer trsalleslf eelqlrsrsm mglpigeddk
      421 tengsggfle nfkrvirgrs qsldtmgism rkqqpatlps rpttaglals qsvtegpkai
      481 aasfalpgrs psrtrasrfh grrssaigie niqeekrdta eriqkvldsp gtffdlksdg
      541 ssspsspefp srkskmlksq tsgycvmqpf scssssvssc csglrenets eeendrelmc
      601 sleglpkqds miqsmwldds dctpstsssp gsrllpsssv agstgkgkgs ktdaqhhnpv
      661 saliksfflt cteirmgekt vt
//
LOCUS       XP_053911499             667 aa            linear   VRT 09-MAR-2023
DEFINITION  rap1 GTPase-activating protein 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053911499
VERSION     XP_053911499.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055524.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..667
                     /product="rap1 GTPase-activating protein 1 isoform X3"
                     /calculated_mol_wt=74262
     Region          <1..17
                     /region_name="GoLoco"
                     /note="GoLoco motif; pfam02188"
                     /db_xref="CDD:460481"
     Region          213..392
                     /region_name="Rap_GAP"
                     /note="Rap/ran-GAP; pfam02145"
                     /db_xref="CDD:460463"
     CDS             1..667
                     /gene="LOC104064347"
                     /coded_by="XM_054055524.1:1414..3417"
                     /db_xref="GeneID:104064347"
ORIGIN      
        1 miekmqgsrl deqrcslpap lkteeeyipy psihevlqkg wpypliilpq fggywiegts
       61 hnisslnptl sdapfpwsgk vklesdptak lyrkhflgke hqnfyssdms lgylvlsvky
      121 eqsekqenlr lllrtrtgtk hdlipiscln efpnavqmak llcedvnver ffpvlypkas
      181 qlivafdehv isnnfkfgvi yqkpgqttee evfsnteesl gflefldflg dkiqlqdfrg
      241 frggldvtrg qtgtesvytn frgkeimfhv stklpftegd sqqlqrkrhi gndivaiifq
      301 destpfvpdm iasnflhayv vvqlthsttg dtlykvsvta rddvpffgpp lpnpaifrks
      361 aefrefllak linaeyscyr aekfakleer trsalleslf eelqlrsrsm mglpigeddk
      421 tengsggfle nfkrvirgrs qsldtmgism rkqqpatlps rpttaglals qsvtegpkai
      481 aasfalpgrs psrtrasrfh grrssaigie niqeeksrdt aeriqkvlds pgtffdlksd
      541 gssspsspef psrkskmlks qtsgycvmqp fscssssvss ccsglrenet seeendrelm
      601 csleglpkqd smiqsmwldd sdctpstsss pgsrllpsss vagstgkgkg sktdaqhhnp
      661 asilccv
//
LOCUS       XP_053911951             665 aa            linear   VRT 09-MAR-2023
DEFINITION  rap1 GTPase-activating protein 1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053911951
VERSION     XP_053911951.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055976.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..665
                     /product="rap1 GTPase-activating protein 1 isoform X4"
                     /calculated_mol_wt=73966
     Region          <1..17
                     /region_name="GoLoco"
                     /note="GoLoco motif; pfam02188"
                     /db_xref="CDD:460481"
     Region          195..374
                     /region_name="Rap_GAP"
                     /note="Rap/ran-GAP; pfam02145"
                     /db_xref="CDD:460463"
     CDS             1..665
                     /gene="LOC104064347"
                     /coded_by="XM_054055976.1:1416..3413"
                     /db_xref="GeneID:104064347"
ORIGIN      
        1 miekmqgsrl deqrcslpap lkteeeyipy psihevlqkg wpypliilpq fggywiegts
       61 hnisslnptl sdapfpwsgk vklesdptak lyrkhflgke hqnfyssdms lgylvlsvky
      121 eqsekqenlr lllrtrtgtk hdlipiscln efpnavqmak asqlivafde hvisnnfkfg
      181 viyqkpgqtt eeevfsntee slgflefldf lgdkiqlqdf rgfrggldvt rgqtgtesvy
      241 tnfrgkeimf hvstklpfte gdsqqlqrkr higndivaii fqdestpfvp dmiasnflha
      301 yvvvqlthst tgdtlykvsv tarddvpffg pplpnpaifr ksaefrefll aklinaeysc
      361 yraekfakle ertrsalles lfeelqlrsr smmglpiged dktengsggf lenfkrvirg
      421 rsqsldtmgi smrkqqpatl psrpttagla lsqsvtegpk aiaasfalpg rspsrtrasr
      481 fhgrrssaig ieniqeeksr dtaeriqkvl dspgtffdlk sdgssspssp efpsrkskml
      541 ksqtsgycvm qpfscssssv ssccsglren etseeendre lmcsleglpk qdsmiqsmwl
      601 ddsdctpsts sspgsrllps ssvagstgkg kgsktdaqhh npvsaliksf fltcteirmg
      661 ektvt
//
LOCUS       XP_053912021             634 aa            linear   VRT 09-MAR-2023
DEFINITION  rap1 GTPase-activating protein 1 isoform X5 [Cuculus canorus].
ACCESSION   XP_053912021
VERSION     XP_053912021.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056046.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..634
                     /product="rap1 GTPase-activating protein 1 isoform X5"
                     /calculated_mol_wt=71012
     Region          <1..17
                     /region_name="GoLoco"
                     /note="GoLoco motif; pfam02188"
                     /db_xref="CDD:460481"
     Region          213..392
                     /region_name="Rap_GAP"
                     /note="Rap/ran-GAP; pfam02145"
                     /db_xref="CDD:460463"
     CDS             1..634
                     /gene="LOC104064347"
                     /coded_by="XM_054056046.1:1414..3318"
                     /db_xref="GeneID:104064347"
ORIGIN      
        1 miekmqgsrl deqrcslpap lkteeeyipy psihevlqkg wpypliilpq fggywiegts
       61 hnisslnptl sdapfpwsgk vklesdptak lyrkhflgke hqnfyssdms lgylvlsvky
      121 eqsekqenlr lllrtrtgtk hdlipiscln efpnavqmak llcedvnver ffpvlypkas
      181 qlivafdehv isnnfkfgvi yqkpgqttee evfsnteesl gflefldflg dkiqlqdfrg
      241 frggldvtrg qtgtesvytn frgkeimfhv stklpftegd sqqlqrkrhi gndivaiifq
      301 destpfvpdm iasnflhayv vvqlthsttg dtlykvsvta rddvpffgpp lpnpaifrks
      361 aefrefllak linaeyscyr aekfakleer trsalleslf eelqlrsrsm mglpigeddk
      421 tengsggfle nfksfalpgr spsrtrasrf hgrrssaigi eniqeeksrd taeriqkvld
      481 spgtffdlks dgssspsspe fpsrkskmlk sqtsgycvmq pfscssssvs sccsglrene
      541 tseeendrel mcsleglpkq dsmiqsmwld dsdctpstss spgsrllpss svagstgkgk
      601 gsktdaqhhn pvsaliksff ltcteirmge ktvt
//
LOCUS       XP_053912088             633 aa            linear   VRT 09-MAR-2023
DEFINITION  rap1 GTPase-activating protein 1 isoform X6 [Cuculus canorus].
ACCESSION   XP_053912088
VERSION     XP_053912088.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056113.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..633
                     /product="rap1 GTPase-activating protein 1 isoform X6"
                     /calculated_mol_wt=70924
     Region          <1..17
                     /region_name="GoLoco"
                     /note="GoLoco motif; pfam02188"
                     /db_xref="CDD:460481"
     Region          213..392
                     /region_name="Rap_GAP"
                     /note="Rap/ran-GAP; pfam02145"
                     /db_xref="CDD:460463"
     CDS             1..633
                     /gene="LOC104064347"
                     /coded_by="XM_054056113.1:1414..3315"
                     /db_xref="GeneID:104064347"
ORIGIN      
        1 miekmqgsrl deqrcslpap lkteeeyipy psihevlqkg wpypliilpq fggywiegts
       61 hnisslnptl sdapfpwsgk vklesdptak lyrkhflgke hqnfyssdms lgylvlsvky
      121 eqsekqenlr lllrtrtgtk hdlipiscln efpnavqmak llcedvnver ffpvlypkas
      181 qlivafdehv isnnfkfgvi yqkpgqttee evfsnteesl gflefldflg dkiqlqdfrg
      241 frggldvtrg qtgtesvytn frgkeimfhv stklpftegd sqqlqrkrhi gndivaiifq
      301 destpfvpdm iasnflhayv vvqlthsttg dtlykvsvta rddvpffgpp lpnpaifrks
      361 aefrefllak linaeyscyr aekfakleer trsalleslf eelqlrsrsm mglpigeddk
      421 tengsggfle nfksfalpgr spsrtrasrf hgrrssaigi eniqeekrdt aeriqkvlds
      481 pgtffdlksd gssspsspef psrkskmlks qtsgycvmqp fscssssvss ccsglrenet
      541 seeendrelm csleglpkqd smiqsmwldd sdctpstsss pgsrllpsss vagstgkgkg
      601 sktdaqhhnp vsaliksffl tcteirmgek tvt
//
LOCUS       XP_053912168             608 aa            linear   VRT 09-MAR-2023
DEFINITION  rap1 GTPase-activating protein 1 isoform X7 [Cuculus canorus].
ACCESSION   XP_053912168
VERSION     XP_053912168.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056193.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..608
                     /product="rap1 GTPase-activating protein 1 isoform X7"
                     /calculated_mol_wt=68580
     Region          <1..17
                     /region_name="GoLoco"
                     /note="GoLoco motif; pfam02188"
                     /db_xref="CDD:460481"
     Region          213..392
                     /region_name="Rap_GAP"
                     /note="Rap/ran-GAP; pfam02145"
                     /db_xref="CDD:460463"
     CDS             1..608
                     /gene="LOC104064347"
                     /coded_by="XM_054056193.1:1414..3240"
                     /db_xref="GeneID:104064347"
ORIGIN      
        1 miekmqgsrl deqrcslpap lkteeeyipy psihevlqkg wpypliilpq fggywiegts
       61 hnisslnptl sdapfpwsgk vklesdptak lyrkhflgke hqnfyssdms lgylvlsvky
      121 eqsekqenlr lllrtrtgtk hdlipiscln efpnavqmak llcedvnver ffpvlypkas
      181 qlivafdehv isnnfkfgvi yqkpgqttee evfsnteesl gflefldflg dkiqlqdfrg
      241 frggldvtrg qtgtesvytn frgkeimfhv stklpftegd sqqlqrkrhi gndivaiifq
      301 destpfvpdm iasnflhayv vvqlthsttg dtlykvsvta rddvpffgpp lpnpaifrks
      361 aefrefllak linaeyscyr aekfakleer trsalleslf eelqlrsrsm mglpigeddk
      421 tengsggfle nfkrvirgrs qsldtmgism rkqqpatlps rpttaglals qsvtegpkai
      481 aasfalpgrs psrtrasrfh grrssaigie niqeeksrdt aeriqkvlds pgtffdlksd
      541 gssspsspef psrkskhcsi lkvrclavth qfraytsewg hqanqewngc ysvicylted
      601 tdktfgvk
//
LOCUS       XP_053912239             582 aa            linear   VRT 09-MAR-2023
DEFINITION  rap1 GTPase-activating protein 1 isoform X8 [Cuculus canorus].
ACCESSION   XP_053912239
VERSION     XP_053912239.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056264.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..582
                     /product="rap1 GTPase-activating protein 1 isoform X8"
                     /calculated_mol_wt=65759
     Region          <1..17
                     /region_name="GoLoco"
                     /note="GoLoco motif; pfam02188"
                     /db_xref="CDD:460481"
     Region          213..392
                     /region_name="Rap_GAP"
                     /note="Rap/ran-GAP; pfam02145"
                     /db_xref="CDD:460463"
     CDS             1..582
                     /gene="LOC104064347"
                     /coded_by="XM_054056264.1:1414..3162"
                     /db_xref="GeneID:104064347"
ORIGIN      
        1 miekmqgsrl deqrcslpap lkteeeyipy psihevlqkg wpypliilpq fggywiegts
       61 hnisslnptl sdapfpwsgk vklesdptak lyrkhflgke hqnfyssdms lgylvlsvky
      121 eqsekqenlr lllrtrtgtk hdlipiscln efpnavqmak llcedvnver ffpvlypkas
      181 qlivafdehv isnnfkfgvi yqkpgqttee evfsnteesl gflefldflg dkiqlqdfrg
      241 frggldvtrg qtgtesvytn frgkeimfhv stklpftegd sqqlqrkrhi gndivaiifq
      301 destpfvpdm iasnflhayv vvqlthsttg dtlykvsvta rddvpffgpp lpnpaifrks
      361 aefrefllak linaeyscyr aekfakleer trsalleslf eelqlrsrsm mglpigeddk
      421 tengsggfle nfkrvirgrs qsldtmgism rkqqpatlps rpttaglals qsvtegpkai
      481 aasfalpgrs psrtrasrfh grrssaigie niqeeksrdt aeriqkvlds pgtffdlksd
      541 gssspsspef psrkskkqva sfqqccwlhw krkrqqnrcs ap
//
LOCUS       XP_053912314             582 aa            linear   VRT 09-MAR-2023
DEFINITION  rap1 GTPase-activating protein 1 isoform X8 [Cuculus canorus].
ACCESSION   XP_053912314
VERSION     XP_053912314.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056339.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..582
                     /product="rap1 GTPase-activating protein 1 isoform X8"
                     /calculated_mol_wt=65759
     Region          <1..17
                     /region_name="GoLoco"
                     /note="GoLoco motif; pfam02188"
                     /db_xref="CDD:460481"
     Region          213..392
                     /region_name="Rap_GAP"
                     /note="Rap/ran-GAP; pfam02145"
                     /db_xref="CDD:460463"
     CDS             1..582
                     /gene="LOC104064347"
                     /coded_by="XM_054056339.1:1413..3161"
                     /db_xref="GeneID:104064347"
ORIGIN      
        1 miekmqgsrl deqrcslpap lkteeeyipy psihevlqkg wpypliilpq fggywiegts
       61 hnisslnptl sdapfpwsgk vklesdptak lyrkhflgke hqnfyssdms lgylvlsvky
      121 eqsekqenlr lllrtrtgtk hdlipiscln efpnavqmak llcedvnver ffpvlypkas
      181 qlivafdehv isnnfkfgvi yqkpgqttee evfsnteesl gflefldflg dkiqlqdfrg
      241 frggldvtrg qtgtesvytn frgkeimfhv stklpftegd sqqlqrkrhi gndivaiifq
      301 destpfvpdm iasnflhayv vvqlthsttg dtlykvsvta rddvpffgpp lpnpaifrks
      361 aefrefllak linaeyscyr aekfakleer trsalleslf eelqlrsrsm mglpigeddk
      421 tengsggfle nfkrvirgrs qsldtmgism rkqqpatlps rpttaglals qsvtegpkai
      481 aasfalpgrs psrtrasrfh grrssaigie niqeeksrdt aeriqkvlds pgtffdlksd
      541 gssspsspef psrkskkqva sfqqccwlhw krkrqqnrcs ap
//
LOCUS       XP_053912444             574 aa            linear   VRT 09-MAR-2023
DEFINITION  rap1 GTPase-activating protein 1 isoform X9 [Cuculus canorus].
ACCESSION   XP_053912444
VERSION     XP_053912444.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056469.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..574
                     /product="rap1 GTPase-activating protein 1 isoform X9"
                     /calculated_mol_wt=64624
     Region          <1..17
                     /region_name="GoLoco"
                     /note="GoLoco motif; pfam02188"
                     /db_xref="CDD:460481"
     Region          213..392
                     /region_name="Rap_GAP"
                     /note="Rap/ran-GAP; pfam02145"
                     /db_xref="CDD:460463"
     CDS             1..574
                     /gene="LOC104064347"
                     /coded_by="XM_054056469.1:1414..3138"
                     /db_xref="GeneID:104064347"
ORIGIN      
        1 miekmqgsrl deqrcslpap lkteeeyipy psihevlqkg wpypliilpq fggywiegts
       61 hnisslnptl sdapfpwsgk vklesdptak lyrkhflgke hqnfyssdms lgylvlsvky
      121 eqsekqenlr lllrtrtgtk hdlipiscln efpnavqmak llcedvnver ffpvlypkas
      181 qlivafdehv isnnfkfgvi yqkpgqttee evfsnteesl gflefldflg dkiqlqdfrg
      241 frggldvtrg qtgtesvytn frgkeimfhv stklpftegd sqqlqrkrhi gndivaiifq
      301 destpfvpdm iasnflhayv vvqlthsttg dtlykvsvta rddvpffgpp lpnpaifrks
      361 aefrefllak linaeyscyr aekfakleer trsalleslf eelqlrsrsm mglpigeddk
      421 tengsggfle nfkrvirgrs qsldtmgism rkqqpatlps rpttaglals qsvtegpkai
      481 aasfalpgrs psrtrasrfh grrssaigie niqeeksrdt aeriqkvlds pgtffdlksd
      541 gssspsspef psrkskhcsi lkvrclavth qfra
//
LOCUS       XP_053912516             560 aa            linear   VRT 09-MAR-2023
DEFINITION  rap1 GTPase-activating protein 1 isoform X10 [Cuculus canorus].
ACCESSION   XP_053912516
VERSION     XP_053912516.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056541.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..560
                     /product="rap1 GTPase-activating protein 1 isoform X10"
                     /calculated_mol_wt=63064
     Region          <1..17
                     /region_name="GoLoco"
                     /note="GoLoco motif; pfam02188"
                     /db_xref="CDD:460481"
     Region          213..392
                     /region_name="Rap_GAP"
                     /note="Rap/ran-GAP; pfam02145"
                     /db_xref="CDD:460463"
     CDS             1..560
                     /gene="LOC104064347"
                     /coded_by="XM_054056541.1:1413..3095"
                     /db_xref="GeneID:104064347"
ORIGIN      
        1 miekmqgsrl deqrcslpap lkteeeyipy psihevlqkg wpypliilpq fggywiegts
       61 hnisslnptl sdapfpwsgk vklesdptak lyrkhflgke hqnfyssdms lgylvlsvky
      121 eqsekqenlr lllrtrtgtk hdlipiscln efpnavqmak llcedvnver ffpvlypkas
      181 qlivafdehv isnnfkfgvi yqkpgqttee evfsnteesl gflefldflg dkiqlqdfrg
      241 frggldvtrg qtgtesvytn frgkeimfhv stklpftegd sqqlqrkrhi gndivaiifq
      301 destpfvpdm iasnflhayv vvqlthsttg dtlykvsvta rddvpffgpp lpnpaifrks
      361 aefrefllak linaeyscyr aekfakleer trsalleslf eelqlrsrsm mglpigeddk
      421 tengsggfle nfkrvirgrs qsldtmgism rkqqpatlps rpttaglals qsvtegpkai
      481 aasfalpgrs psrtrasrfh grrssaigie niqeeksrdt aeriqkvlds pgtffdlksd
      541 gssspsspef psrkskswkc
//
LOCUS       XP_053912587             558 aa            linear   VRT 09-MAR-2023
DEFINITION  rap1 GTPase-activating protein 1 isoform X11 [Cuculus canorus].
ACCESSION   XP_053912587
VERSION     XP_053912587.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056612.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..558
                     /product="rap1 GTPase-activating protein 1 isoform X11"
                     /calculated_mol_wt=62810
     Region          <1..17
                     /region_name="GoLoco"
                     /note="GoLoco motif; pfam02188"
                     /db_xref="CDD:460481"
     Region          213..392
                     /region_name="Rap_GAP"
                     /note="Rap/ran-GAP; pfam02145"
                     /db_xref="CDD:460463"
     CDS             1..558
                     /gene="LOC104064347"
                     /coded_by="XM_054056612.1:1412..3088"
                     /db_xref="GeneID:104064347"
ORIGIN      
        1 miekmqgsrl deqrcslpap lkteeeyipy psihevlqkg wpypliilpq fggywiegts
       61 hnisslnptl sdapfpwsgk vklesdptak lyrkhflgke hqnfyssdms lgylvlsvky
      121 eqsekqenlr lllrtrtgtk hdlipiscln efpnavqmak llcedvnver ffpvlypkas
      181 qlivafdehv isnnfkfgvi yqkpgqttee evfsnteesl gflefldflg dkiqlqdfrg
      241 frggldvtrg qtgtesvytn frgkeimfhv stklpftegd sqqlqrkrhi gndivaiifq
      301 destpfvpdm iasnflhayv vvqlthsttg dtlykvsvta rddvpffgpp lpnpaifrks
      361 aefrefllak linaeyscyr aekfakleer trsalleslf eelqlrsrsm mglpigeddk
      421 tengsggfle nfkrvirgrs qsldtmgism rkqqpatlps rpttaglals qsvtegpkai
      481 aasfalpgrs psrtrasrfh grrssaigie niqeeksrdt aeriqkvlds pgtffdlksd
      541 gssspsspef psrkskhi
//
LOCUS       XP_053912662             558 aa            linear   VRT 09-MAR-2023
DEFINITION  rap1 GTPase-activating protein 1 isoform X12 [Cuculus canorus].
ACCESSION   XP_053912662
VERSION     XP_053912662.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056687.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..558
                     /product="rap1 GTPase-activating protein 1 isoform X12"
                     /calculated_mol_wt=62745
     Region          <1..17
                     /region_name="GoLoco"
                     /note="GoLoco motif; pfam02188"
                     /db_xref="CDD:460481"
     Region          213..392
                     /region_name="Rap_GAP"
                     /note="Rap/ran-GAP; pfam02145"
                     /db_xref="CDD:460463"
     CDS             1..558
                     /gene="LOC104064347"
                     /coded_by="XM_054056687.1:1413..3089"
                     /db_xref="GeneID:104064347"
ORIGIN      
        1 miekmqgsrl deqrcslpap lkteeeyipy psihevlqkg wpypliilpq fggywiegts
       61 hnisslnptl sdapfpwsgk vklesdptak lyrkhflgke hqnfyssdms lgylvlsvky
      121 eqsekqenlr lllrtrtgtk hdlipiscln efpnavqmak llcedvnver ffpvlypkas
      181 qlivafdehv isnnfkfgvi yqkpgqttee evfsnteesl gflefldflg dkiqlqdfrg
      241 frggldvtrg qtgtesvytn frgkeimfhv stklpftegd sqqlqrkrhi gndivaiifq
      301 destpfvpdm iasnflhayv vvqlthsttg dtlykvsvta rddvpffgpp lpnpaifrks
      361 aefrefllak linaeyscyr aekfakleer trsalleslf eelqlrsrsm mglpigeddk
      421 tengsggfle nfkrvirgrs qsldtmgism rkqqpatlps rpttaglals qsvtegpkai
      481 aasfalpgrs psrtrasrfh grrssaigie niqeeksrdt aeriqkvlds pgtffdlksd
      541 gssspsspef psrksksv
//
LOCUS       XP_053912733             557 aa            linear   VRT 09-MAR-2023
DEFINITION  rap1 GTPase-activating protein 1 isoform X13 [Cuculus canorus].
ACCESSION   XP_053912733
VERSION     XP_053912733.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056758.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..557
                     /product="rap1 GTPase-activating protein 1 isoform X13"
                     /calculated_mol_wt=62722
     Region          <1..17
                     /region_name="GoLoco"
                     /note="GoLoco motif; pfam02188"
                     /db_xref="CDD:460481"
     Region          213..392
                     /region_name="Rap_GAP"
                     /note="Rap/ran-GAP; pfam02145"
                     /db_xref="CDD:460463"
     CDS             1..557
                     /gene="LOC104064347"
                     /coded_by="XM_054056758.1:1412..3085"
                     /db_xref="GeneID:104064347"
ORIGIN      
        1 miekmqgsrl deqrcslpap lkteeeyipy psihevlqkg wpypliilpq fggywiegts
       61 hnisslnptl sdapfpwsgk vklesdptak lyrkhflgke hqnfyssdms lgylvlsvky
      121 eqsekqenlr lllrtrtgtk hdlipiscln efpnavqmak llcedvnver ffpvlypkas
      181 qlivafdehv isnnfkfgvi yqkpgqttee evfsnteesl gflefldflg dkiqlqdfrg
      241 frggldvtrg qtgtesvytn frgkeimfhv stklpftegd sqqlqrkrhi gndivaiifq
      301 destpfvpdm iasnflhayv vvqlthsttg dtlykvsvta rddvpffgpp lpnpaifrks
      361 aefrefllak linaeyscyr aekfakleer trsalleslf eelqlrsrsm mglpigeddk
      421 tengsggfle nfkrvirgrs qsldtmgism rkqqpatlps rpttaglals qsvtegpkai
      481 aasfalpgrs psrtrasrfh grrssaigie niqeekrdta eriqkvldsp gtffdlksdg
      541 ssspsspefp srkskhi
//
LOCUS       XP_053912802             557 aa            linear   VRT 09-MAR-2023
DEFINITION  rap1 GTPase-activating protein 1 isoform X14 [Cuculus canorus].
ACCESSION   XP_053912802
VERSION     XP_053912802.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056827.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..557
                     /product="rap1 GTPase-activating protein 1 isoform X14"
                     /calculated_mol_wt=62646
     Region          <1..17
                     /region_name="GoLoco"
                     /note="GoLoco motif; pfam02188"
                     /db_xref="CDD:460481"
     Region          213..392
                     /region_name="Rap_GAP"
                     /note="Rap/ran-GAP; pfam02145"
                     /db_xref="CDD:460463"
     CDS             1..557
                     /gene="LOC104064347"
                     /coded_by="XM_054056827.1:1413..3086"
                     /db_xref="GeneID:104064347"
ORIGIN      
        1 miekmqgsrl deqrcslpap lkteeeyipy psihevlqkg wpypliilpq fggywiegts
       61 hnisslnptl sdapfpwsgk vklesdptak lyrkhflgke hqnfyssdms lgylvlsvky
      121 eqsekqenlr lllrtrtgtk hdlipiscln efpnavqmak llcedvnver ffpvlypkas
      181 qlivafdehv isnnfkfgvi yqkpgqttee evfsnteesl gflefldflg dkiqlqdfrg
      241 frggldvtrg qtgtesvytn frgkeimfhv stklpftegd sqqlqrkrhi gndivaiifq
      301 destpfvpdm iasnflhayv vvqlthsttg dtlykvsvta rddvpffgpp lpnpaifrks
      361 aefrefllak linaeyscyr aekfakleer trsalleslf eelqlrsrsm mglpigeddk
      421 tengsggfle nfkrvirgrs qsldtmgism rkqqpatlps rpttaglals qsvtegpkai
      481 aasfalpgrs psrtrasrfh grrssaigie niqeeksrdt aeriqkvlds pgtffdlksd
      541 gssspsspef psrksks
//
LOCUS       XP_053912848             556 aa            linear   VRT 09-MAR-2023
DEFINITION  rap1 GTPase-activating protein 1 isoform X15 [Cuculus canorus].
ACCESSION   XP_053912848
VERSION     XP_053912848.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056873.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..556
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..556
                     /product="rap1 GTPase-activating protein 1 isoform X15"
                     /calculated_mol_wt=62559
     Region          <1..17
                     /region_name="GoLoco"
                     /note="GoLoco motif; pfam02188"
                     /db_xref="CDD:460481"
     Region          213..392
                     /region_name="Rap_GAP"
                     /note="Rap/ran-GAP; pfam02145"
                     /db_xref="CDD:460463"
     CDS             1..556
                     /gene="LOC104064347"
                     /coded_by="XM_054056873.1:1413..3083"
                     /db_xref="GeneID:104064347"
ORIGIN      
        1 miekmqgsrl deqrcslpap lkteeeyipy psihevlqkg wpypliilpq fggywiegts
       61 hnisslnptl sdapfpwsgk vklesdptak lyrkhflgke hqnfyssdms lgylvlsvky
      121 eqsekqenlr lllrtrtgtk hdlipiscln efpnavqmak llcedvnver ffpvlypkas
      181 qlivafdehv isnnfkfgvi yqkpgqttee evfsnteesl gflefldflg dkiqlqdfrg
      241 frggldvtrg qtgtesvytn frgkeimfhv stklpftegd sqqlqrkrhi gndivaiifq
      301 destpfvpdm iasnflhayv vvqlthsttg dtlykvsvta rddvpffgpp lpnpaifrks
      361 aefrefllak linaeyscyr aekfakleer trsalleslf eelqlrsrsm mglpigeddk
      421 tengsggfle nfkrvirgrs qsldtmgism rkqqpatlps rpttaglals qsvtegpkai
      481 aasfalpgrs psrtrasrfh grrssaigie niqeeksrdt aeriqkvlds pgtffdlksd
      541 gssspsspef psrksk
//
LOCUS       XP_053912921             491 aa            linear   VRT 09-MAR-2023
DEFINITION  rap1 GTPase-activating protein 1 isoform X16 [Cuculus canorus].
ACCESSION   XP_053912921
VERSION     XP_053912921.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056946.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..491
                     /product="rap1 GTPase-activating protein 1 isoform X16"
                     /calculated_mol_wt=55220
     Region          <1..17
                     /region_name="GoLoco"
                     /note="GoLoco motif; pfam02188"
                     /db_xref="CDD:460481"
     Region          213..392
                     /region_name="Rap_GAP"
                     /note="Rap/ran-GAP; pfam02145"
                     /db_xref="CDD:460463"
     CDS             1..491
                     /gene="LOC104064347"
                     /coded_by="XM_054056946.1:1412..2887"
                     /db_xref="GeneID:104064347"
ORIGIN      
        1 miekmqgsrl deqrcslpap lkteeeyipy psihevlqkg wpypliilpq fggywiegts
       61 hnisslnptl sdapfpwsgk vklesdptak lyrkhflgke hqnfyssdms lgylvlsvky
      121 eqsekqenlr lllrtrtgtk hdlipiscln efpnavqmak llcedvnver ffpvlypkas
      181 qlivafdehv isnnfkfgvi yqkpgqttee evfsnteesl gflefldflg dkiqlqdfrg
      241 frggldvtrg qtgtesvytn frgkeimfhv stklpftegd sqqlqrkrhi gndivaiifq
      301 destpfvpdm iasnflhayv vvqlthsttg dtlykvsvta rddvpffgpp lpnpaifrks
      361 aefrefllak linaeyscyr aekfakleer trsalleslf eelqlrsrsm mglpigeddk
      421 tengsggfle nfkrvirgrs qsldtmgism rkqqpatlps rpttaglals qsvtegpkai
      481 aagseqagpl g
//
LOCUS       XP_053913033             224 aa            linear   VRT 09-MAR-2023
DEFINITION  glutathione S-transferase kappa 1 [Cuculus canorus].
ACCESSION   XP_053913033
VERSION     XP_053913033.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057058.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..224
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..224
                     /product="glutathione S-transferase kappa 1"
                     /calculated_mol_wt=25187
     Region          5..209
                     /region_name="DsbA_GSTK"
                     /note="DsbA family, Glutathione (GSH) S-transferase Kappa
                     (GSTK) subfamily; GSTK is a member of the GST family of
                     enzymes which catalyzes the transfer of the thiol of GSH
                     to electrophilic substrates. It is specifically located in
                     the mitochondria and...; cd03021"
                     /db_xref="CDD:239319"
     Site            order(14..16,51,60,179..181,196,198..200)
                     /site_type="other"
                     /note="GSH binding site [chemical binding]"
                     /db_xref="CDD:239319"
     Site            14
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239319"
     Site            order(49,51..52,57,59,63,67,174,177,194,196,199..200,206)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239319"
     CDS             1..224
                     /gene="GSTK1"
                     /coded_by="XM_054057058.1:10..684"
                     /db_xref="GeneID:104064388"
ORIGIN      
        1 mgrtrvelfy dvvspyswlg fevlcryqhi wnidlcfrps flagimqatg nkppgmlpkr
       61 geymlkdver makyyqvpvk isggvlqrvi gtgtlaamrf ltaidmtqpr yleplsrefw
      121 iqfwsqhedi sqpenilava qraglsseva qkqlemisss avknrlkett eealkygafg
      181 mpavvahfng ephlffgsdr lellssvige kwlgpvpsvp spkm
//
LOCUS       XP_009566869             354 aa            linear   VRT 09-MAR-2023
DEFINITION  guanine nucleotide-binding protein G(i) subunit alpha-1 isoform X1
            [Cuculus canorus].
ACCESSION   XP_009566869
VERSION     XP_009566869.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568574.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..354
                     /product="guanine nucleotide-binding protein G(i) subunit
                     alpha-1 isoform X1"
                     /calculated_mol_wt=40289
     Region          34..348
                     /region_name="G-alpha"
                     /note="Alpha subunit of G proteins (guanine nucleotide
                     binding); cd00066"
                     /db_xref="CDD:206639"
     Site            order(40,45..47,181,200,203,269..270,272,325..326)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206639"
     Site            40..47
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206639"
     Site            order(41..43,71,75,79,82,85..86,104,107,149,178,203,211,
                     215)
                     /site_type="active"
                     /note="GoLoco binding site [active]"
                     /db_xref="CDD:206639"
     Site            176..184
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206639"
     Site            181
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206639"
     Site            order(182,184,186,197,199,203..205,207,210..211,213..216)
                     /site_type="other"
                     /note="beta - gamma complex interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206639"
     Site            order(184,209,212..213,216)
                     /site_type="other"
                     /note="adenylyl cyclase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206639"
     Site            200..203
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206639"
     Site            201..217
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206639"
     Site            269..272
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206639"
     Site            order(317..328,330..333)
                     /site_type="active"
                     /note="putative receptor binding site [active]"
                     /db_xref="CDD:206639"
     Site            325..327
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206639"
     CDS             1..354
                     /gene="LOC104066031"
                     /coded_by="XM_009568574.2:294..1358"
                     /db_xref="GeneID:104066031"
ORIGIN      
        1 mgctlsaedk aaverskmid rnlredgeka arevkllllg agesgkstiv kqmkiiheag
       61 yseeeckqyk avvysntiqs iiaiiramgr lkidfgdptr addarqlfvl agaaeegfmt
      121 aelagvikrl wkdsgvqacf nrsreyqlnd saayylndld riaqtsyipt qqdvlrtrvk
      181 ttgivethft fkdlhfkmfd vggqrserkk wihcfegvta iifcvalsdy dlvlaedeem
      241 nrmhesmklf dsicnnkwft etsiilflnk kdlfeekikr splticypey agsntyeeaa
      301 ayiqcqfedl nkrkdtkeiy thftcatdtk nvqfvfdavt dviiknnlkd cglf
//
LOCUS       XP_009566870             354 aa            linear   VRT 09-MAR-2023
DEFINITION  guanine nucleotide-binding protein G(i) subunit alpha-1 isoform X1
            [Cuculus canorus].
ACCESSION   XP_009566870
VERSION     XP_009566870.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568575.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..354
                     /product="guanine nucleotide-binding protein G(i) subunit
                     alpha-1 isoform X1"
                     /calculated_mol_wt=40289
     Region          34..348
                     /region_name="G-alpha"
                     /note="Alpha subunit of G proteins (guanine nucleotide
                     binding); cd00066"
                     /db_xref="CDD:206639"
     Site            order(40,45..47,181,200,203,269..270,272,325..326)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206639"
     Site            40..47
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206639"
     Site            order(41..43,71,75,79,82,85..86,104,107,149,178,203,211,
                     215)
                     /site_type="active"
                     /note="GoLoco binding site [active]"
                     /db_xref="CDD:206639"
     Site            176..184
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206639"
     Site            181
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206639"
     Site            order(182,184,186,197,199,203..205,207,210..211,213..216)
                     /site_type="other"
                     /note="beta - gamma complex interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206639"
     Site            order(184,209,212..213,216)
                     /site_type="other"
                     /note="adenylyl cyclase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206639"
     Site            200..203
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206639"
     Site            201..217
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206639"
     Site            269..272
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206639"
     Site            order(317..328,330..333)
                     /site_type="active"
                     /note="putative receptor binding site [active]"
                     /db_xref="CDD:206639"
     Site            325..327
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206639"
     CDS             1..354
                     /gene="LOC104066031"
                     /coded_by="XM_009568575.2:294..1358"
                     /db_xref="GeneID:104066031"
ORIGIN      
        1 mgctlsaedk aaverskmid rnlredgeka arevkllllg agesgkstiv kqmkiiheag
       61 yseeeckqyk avvysntiqs iiaiiramgr lkidfgdptr addarqlfvl agaaeegfmt
      121 aelagvikrl wkdsgvqacf nrsreyqlnd saayylndld riaqtsyipt qqdvlrtrvk
      181 ttgivethft fkdlhfkmfd vggqrserkk wihcfegvta iifcvalsdy dlvlaedeem
      241 nrmhesmklf dsicnnkwft etsiilflnk kdlfeekikr splticypey agsntyeeaa
      301 ayiqcqfedl nkrkdtkeiy thftcatdtk nvqfvfdavt dviiknnlkd cglf
//
LOCUS       XP_053913446             327 aa            linear   VRT 09-MAR-2023
DEFINITION  guanine nucleotide-binding protein G(i) subunit alpha-1 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053913446
VERSION     XP_053913446.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057471.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..327
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..327
                     /product="guanine nucleotide-binding protein G(i) subunit
                     alpha-1 isoform X2"
                     /calculated_mol_wt=37271
     Region          13..321
                     /region_name="G-alpha"
                     /note="Alpha subunit of G proteins (guanine nucleotide
                     binding); cd00066"
                     /db_xref="CDD:206639"
     Site            order(13,18..20,154,173,176,242..243,245,298..299)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206639"
     Site            13..20
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206639"
     Site            order(14..16,44,48,52,55,58..59,77,80,122,151,176,184,188)
                     /site_type="active"
                     /note="GoLoco binding site [active]"
                     /db_xref="CDD:206639"
     Site            149..157
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206639"
     Site            154
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206639"
     Site            order(155,157,159,170,172,176..178,180,183..184,186..189)
                     /site_type="other"
                     /note="beta - gamma complex interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206639"
     Site            order(157,182,185..186,189)
                     /site_type="other"
                     /note="adenylyl cyclase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206639"
     Site            173..176
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206639"
     Site            174..190
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206639"
     Site            242..245
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206639"
     Site            order(290..301,303..306)
                     /site_type="active"
                     /note="putative receptor binding site [active]"
                     /db_xref="CDD:206639"
     Site            298..300
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206639"
     CDS             1..327
                     /gene="LOC104066031"
                     /coded_by="XM_054057471.1:374..1357"
                     /db_xref="GeneID:104066031"
ORIGIN      
        1 mvllgfapht kegagesgks tivkqmkiih eagyseeeck qykavvysnt iqsiiaiira
       61 mgrlkidfgd ptraddarql fvlagaaeeg fmtaelagvi krlwkdsgvq acfnrsreyq
      121 lndsaayyln dldriaqtsy iptqqdvlrt rvkttgivet hftfkdlhfk mfdvggqrse
      181 rkkwihcfeg vtaiifcval sdydlvlaed eemnrmhesm klfdsicnnk wftetsiilf
      241 lnkkdlfeek ikrsplticy peyagsntye eaaayiqcqf edlnkrkdtk eiythftcat
      301 dtknvqfvfd avtdviiknn lkdcglf
//
LOCUS       XP_009566871             354 aa            linear   VRT 09-MAR-2023
DEFINITION  guanine nucleotide-binding protein G(t) subunit alpha-3 isoform X1
            [Cuculus canorus].
ACCESSION   XP_009566871
VERSION     XP_009566871.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568576.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566871.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..354
                     /product="guanine nucleotide-binding protein G(t) subunit
                     alpha-3 isoform X1"
                     /calculated_mol_wt=40276
     Region          34..348
                     /region_name="G-alpha"
                     /note="Alpha subunit of G proteins (guanine nucleotide
                     binding); cd00066"
                     /db_xref="CDD:206639"
     Site            order(40,45..47,181,200,203,269..270,272,325..326)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206639"
     Site            40..47
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206639"
     Site            order(41..43,71,75,79,82,85..86,104,107,149,178,203,211,
                     215)
                     /site_type="active"
                     /note="GoLoco binding site [active]"
                     /db_xref="CDD:206639"
     Site            176..184
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206639"
     Site            181
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206639"
     Site            order(182,184,186,197,199,203..205,207,210..211,213..216)
                     /site_type="other"
                     /note="beta - gamma complex interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206639"
     Site            order(184,209,212..213,216)
                     /site_type="other"
                     /note="adenylyl cyclase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206639"
     Site            200..203
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206639"
     Site            201..217
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206639"
     Site            269..272
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206639"
     Site            order(317..328,330..333)
                     /site_type="active"
                     /note="putative receptor binding site [active]"
                     /db_xref="CDD:206639"
     Site            325..327
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206639"
     CDS             1..354
                     /gene="LOC104066032"
                     /coded_by="XM_009568576.2:4..1068"
                     /db_xref="GeneID:104066032"
ORIGIN      
        1 mgsgassesk elsrrsrele kklqadaere artvkllllg agesgkstiv kqmkiihkdg
       61 ftyqermefr pviysnavqs vlsivkamtk lginyenpar iederklcam attledgnmt
      121 pelvelikql wrdggiqacf araaeyqlnd saayylndld rlampdyvps eqdvlhsrvk
      181 ttgivetqfs fkdlnfrmfd vggqrserkk wihcfegvtc iifcaalsay dmvlvedkev
      241 nrmheslqlf nsicnhkcfa atsivlflnk kdlfrekitk vhlnicfpey nglntfedag
      301 nyikkqfldl nmkkgdkeiy thltcatdtq nvkfvfdavt diiikenlkd cglf
//
LOCUS       XP_053913659             302 aa            linear   VRT 09-MAR-2023
DEFINITION  guanine nucleotide-binding protein G(t) subunit alpha-3 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053913659
VERSION     XP_053913659.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057684.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..302
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..302
                     /product="guanine nucleotide-binding protein G(t) subunit
                     alpha-3 isoform X2"
                     /calculated_mol_wt=34677
     Region          1..296
                     /region_name="G-alpha"
                     /note="Alpha subunit of G proteins (guanine nucleotide
                     binding); cd00066"
                     /db_xref="CDD:206639"
     Site            order(19,23,27,30,33..34,52,55,97,126,151,159,163)
                     /site_type="active"
                     /note="GoLoco binding site [active]"
                     /db_xref="CDD:206639"
     Site            124..132
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206639"
     Site            129
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206639"
     Site            order(130,132,134,145,147,151..153,155,158..159,161..164)
                     /site_type="other"
                     /note="beta - gamma complex interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206639"
     Site            order(132,157,160..161,164)
                     /site_type="other"
                     /note="adenylyl cyclase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206639"
     Site            148..151
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206639"
     Site            149..165
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206639"
     Site            217..220
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206639"
     Site            order(265..276,278..281)
                     /site_type="active"
                     /note="putative receptor binding site [active]"
                     /db_xref="CDD:206639"
     Site            273..275
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206639"
     CDS             1..302
                     /gene="LOC104066032"
                     /coded_by="XM_054057684.1:750..1658"
                     /db_xref="GeneID:104066032"
ORIGIN      
        1 mkiihkdgft yqermefrpv iysnavqsvl sivkamtklg inyenparie derklcamat
       61 tledgnmtpe lvelikqlwr dggiqacfar aaeyqlndsa ayylndldrl ampdyvpseq
      121 dvlhsrvktt givetqfsfk dlnfrmfdvg gqrserkkwi hcfegvtcii fcaalsaydm
      181 vlvedkevnr mheslqlfns icnhkcfaat sivlflnkkd lfrekitkvh lnicfpeyng
      241 lntfedagny ikkqfldlnm kkgdkeiyth ltcatdtqnv kfvfdavtdi iikenlkdcg
      301 lf
//
LOCUS       XP_053914522             390 aa            linear   VRT 09-MAR-2023
DEFINITION  sciellin [Cuculus canorus].
ACCESSION   XP_053914522
VERSION     XP_053914522.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058547.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..390
                     /product="sciellin"
                     /calculated_mol_wt=43772
     Region          <110..207
                     /region_name="Ebola_NP"
                     /note="Ebola nucleoprotein; pfam05505"
                     /db_xref="CDD:398905"
     Region          322..380
                     /region_name="LIM"
                     /note="Zinc-binding domain present in Lin-11, Isl-1,
                     Mec-3; smart00132"
                     /db_xref="CDD:214528"
     Site            order(323,326,346,349,352,355,377,380)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     CDS             1..390
                     /gene="SCEL"
                     /coded_by="XM_054058547.1:252..1424"
                     /db_xref="GeneID:128851224"
ORIGIN      
        1 msafsirkqs snqsdnqsps vaikskqqat hdvnkrrtll qdnswikkrp eeesadenyg
       61 ravlnqyksq dslnssstne kedqkavlgr yrsdtnldri parsnddkin ksptlnnkqg
      121 nrlswtpnaa ptntattspi kkkrqswmpp pvssskttte rvetketase nsedpvttts
      181 sseqvtpqkp ktdgddqaka rnqdldnntk vnpssfisdk egkdvedfte mstadqknkr
      241 dedlgdsteg kpaddqskkw iteqenenpp qatnnlpetk ystdserkts kssygaheen
      301 itgntiktvy stsdrsiigk dictycrkpl gidakmilda lqicchstcf kcevckrple
      361 dlkagdsiwi yrqtvhcepc yskvkekwiy
//
LOCUS       XP_053914643            1688 aa            linear   VRT 09-MAR-2023
DEFINITION  polycystin family receptor for egg jelly [Cuculus canorus].
ACCESSION   XP_053914643
VERSION     XP_053914643.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058668.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 9% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1688
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1688
                     /product="polycystin family receptor for egg jelly"
                     /calculated_mol_wt=187528
     Region          198..658
                     /region_name="REJ"
                     /note="REJ domain; pfam02010"
                     /db_xref="CDD:366875"
     Region          1177..1295
                     /region_name="PLAT"
                     /note="PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin)
                     domain or LH2 (Lipoxygenase homology 2) domain. It
                     consists of an eight stranded beta-barrel. The domain can
                     be found in various domain architectures, in case of
                     lipoxygenases, alpha toxin, lipases and...; cl00011"
                     /db_xref="CDD:412108"
     CDS             1..1688
                     /gene="LOC104062999"
                     /coded_by="XM_054058668.1:1..5067"
                     /db_xref="GeneID:104062999"
ORIGIN      
        1 mvttnvgdli gdikvggclg csdhalvefv vlrgmgqaks kvetsnfskt nfqlfkelvn
       61 rtpwetalgd kgeeqsqqif kdafrgwqel sipsctksgk kgsvllnvfi ndiddvtect
      121 lsklvdhtlm sgttavlpla lsvaransha akamgtpept kkkncyiysl hirkppytsv
      181 leckrgapcv fyanlkidcn ipkmvqclwr vypvldtttp pdwekpinss llhgvdivll
      241 tipsytleyg lylvyfntti talytklvlr asdqiyvkye ksrlvaniag gtfrvvgysd
      301 nwtldgsasy dpdshdgqkg itftwyctke vadygnmkis pgkkchpsqr dlkwltssgp
      361 vqimapeslp gnaiyyfrle iqkdsrssya dqtvdvepgs pvlldarcle ncgsaliptq
      421 rftlsgkcln crtnnqpvyh wsllsgnste isldwssrts tgrsgpylsi rpgtftmvae
      481 qaytlqlkaa twdgrssiyr htfivnsppr agkctinprw gtafqtkfvv qcsgfldnnl
      541 pltykviias svptttkits leentfgpil yfgyqfrtpp svlpvgvpsq kytltlyvqv
      601 ydslgaftqv slcvrvwkpv qlqavvfhel lasvnsssap mashlqtgds lsasylayla
      661 asvlnsmkat ptlqnlkaqf resliqttln isaettmein qvvaalsqit eeasevnpss
      721 qdlvikklte vaavlkvrrn esysseeaei qssgilrcls ntmraavlhq rnvstsgvkk
      781 vfsilekitd ivlqgkvpge ketlmetkhw tialkkdetr nianasstgn tcrncfypsl
      841 rkgnnsglpp davistalfe feensfpwlg htsenptmvl gfamaedkah gnlrgivpeg
      901 aeitlarrek asstfplsig pdktqnyttg gfafkvnrnt ktvyiqiltk levsfqvlvf
      961 tgtkvthshp rasftafhnr ptvasknetg ssdcrikgpy iiclprsllt aialgsstdt
     1021 ttisivlqap yvvryqtqsl vsihifsdqc lsldgaqslw redtcrlgss tdwqrvhcvc
     1081 nmeqslmnls ghaasnaptf nimflaakvi vspnpvdlgk ilitdiprnp vtlctvlgis
     1141 aiyfclslwa lrkdrtdrds khkiivlpdn npldqasflv tlytgsrwga gtkadvflql
     1201 igrngtsdvh clwhpqhlsf qrgsidcfll apkkdlgdic simvwhnnkg pspswflsra
     1261 tvenisrrkt wffmcrkwls ldkgdhllag tfavtnpktl lprldyflis ltkslredhl
     1321 wfsifarvls gtfsrfqrls sclatlllnl lgnivffnae rneasprhlr ylrsiavgte
     1381 cvlvtmpvem tikalfkhsq kelsrrgvah kdskvlspll wayslltnck dhlrksdlse
     1441 ttaqsrnvss lenlsgtsns wnppcsrktr skggpqswqn ctiserdani ieieaqtrtv
     1501 nllstakasq rmppsssncs hyaeegsnfq kerkppstps mpfwkrlcti scrwgvclsw
     1561 vlviavtgis spfivlygls ygsqtsqewl lasvtsfven vfvysvlqii ffsamrtirp
     1621 kslenipwlt qqnysesqla ketmgademr dmhlkvaqvr gtkksgvfif tpkeiirmcf
     1681 dlihffsr
//
LOCUS       XP_053914757             318 aa            linear   VRT 09-MAR-2023
DEFINITION  basic proline-rich protein-like [Cuculus canorus].
ACCESSION   XP_053914757
VERSION     XP_053914757.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058782.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 100% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="basic proline-rich protein-like"
                     /calculated_mol_wt=32405
     CDS             1..318
                     /gene="LOC128851239"
                     /coded_by="XM_054058782.1:1..957"
                     /db_xref="GeneID:128851239"
ORIGIN      
        1 mhirsatsrt aaprcasnra epppagippp lqprdlpfpp lsggrarsnp pilgspvpgg
       61 gkagsippip gspvpgrgra gsippvpgsp vppaqtplpr ggrarsippi pcspvhgrsg
      121 agssppipgp pvppvhtplp crgrtgsipp ipasprshrp apashgaanl rasralgpve
      181 etppgesrrg enngagggis qrpcpisrsp fvpaaappgs agrrcpapsr paaapgqlqp
      241 parapgaalg gvtceekepa rhlppgsrns parrshsrsc rrreeprplr lrqatrrahw
      301 lprrpgptpf apprtrig
//
LOCUS       XP_053915085             253 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128851278 [Cuculus canorus].
ACCESSION   XP_053915085
VERSION     XP_053915085.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059110.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..253
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..253
                     /product="uncharacterized protein LOC128851278"
                     /calculated_mol_wt=28207
     CDS             1..253
                     /gene="LOC128851278"
                     /coded_by="XM_054059110.1:185..946"
                     /db_xref="GeneID:128851278"
ORIGIN      
        1 mytihrssls aliiteefpa lhhsapctqp dcrarggdac dhhvvsrrns plfhphvrnl
       61 rsrsegvffi dfwlslhqnp ldilkpsrlr wlmcsvelsa aasrsveqlr qtpapaaalg
      121 sclcsthlpd tdvfltlhhn yalccrnpmf ffprilwsvk ftrtelvrev kdytkgfnky
      181 idderkfken vgpaegegga veaghevlha lsasvfterl acrnpreqge mlerctlggk
      241 gsghgvpkqt gct
//
LOCUS       XP_053915188             255 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128851286 [Cuculus canorus].
ACCESSION   XP_053915188
VERSION     XP_053915188.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059213.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 100% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..255
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..255
                     /product="uncharacterized protein LOC128851286"
                     /calculated_mol_wt=25962
     CDS             1..255
                     /gene="LOC128851286"
                     /coded_by="XM_054059213.1:1..768"
                     /db_xref="GeneID:128851286"
ORIGIN      
        1 msegivqaly lsvavrdkcn spltmnspll sllptsakgp alpparshlg lsplgdtgdp
       61 agglgaarsp gsgaapagpg lpvpfgadea lqaaptsppq pnisptslsi spqhhprsst
      121 paapehhpht sqhhhprctp astlcspapp qpppnitppa sppnspaspp ppyhhhppas
      181 phispasppq hhplipqqhf disqhhhtpq hhphsppaaa ssitptspsn tstspstttp
      241 psitpsppky hphip
//
LOCUS       XP_053915282             514 aa            linear   VRT 09-MAR-2023
DEFINITION  regulator of nonsense transcripts 3A [Cuculus canorus].
ACCESSION   XP_053915282
VERSION     XP_053915282.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059307.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 5% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..514
                     /product="regulator of nonsense transcripts 3A"
                     /calculated_mol_wt=60089
     Region          90..175
                     /region_name="RRM_like_Smg4_UPF3A"
                     /note="RNA recognition motif (RRM)-like Smg4_UPF3 domain
                     in up-frameshift suppressor 3 homolog A (Upf3A); cd12727"
                     /db_xref="CDD:410126"
     CDS             1..514
                     /gene="UPF3A"
                     /coded_by="XM_054059307.1:1..1545"
                     /db_xref="GeneID:104056673"
ORIGIN      
        1 mqyssltpgl aaaehvgppp ssretprgra rlrwereagl glmrgggggr ekwlmdiplr
       61 resphrdtda panppaappp rpreekkavl skvvirrlpp cltkeqleeq lhplpaydyf
      121 efctadpsly phlysrayin frnpedillf rdrfdgyvfi dnkgleypav vefapfqkis
      181 kkklkkkdak agsieddpey rkflesycad eekicanpei llgeieaktr eliarrttpl
      241 leyiknrkle kqrireekre errrrelekk rlreeekrkr reeerrkrke vekqkkisek
      301 eirikllkkp ekgdeltsek nkekgeeadi eenkwdkspg sgslksksle gslkevkeks
      361 qndsdkeqrd lerrfrekep erqryrlddg rkhrahyevd kfvrrneeel kwgkgynqdr
      421 gkkgnynysf tveavdklgk edkcddmask kerirnkdrp amqlyqpgar irthtgstsk
      481 tydcsgksfe daldkkyead nsagggseks eeve
//
LOCUS       XP_053915374             151 aa            linear   VRT 09-MAR-2023
DEFINITION  neuromedin-S [Cuculus canorus].
ACCESSION   XP_053915374
VERSION     XP_053915374.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059399.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 23% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..151
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..151
                     /product="neuromedin-S"
                     /calculated_mol_wt=16752
     CDS             1..151
                     /gene="NMS"
                     /coded_by="XM_054059399.1:1..456"
                     /db_xref="GeneID:128851326"
ORIGIN      
        1 mrdagckmrd arqpvcppvr lsacpsvrrh pamppsalpw llaacclcal prgsgfpqpf
       61 sryrdsvdlp qsqqlalcfs qwmevsdqpq isstildlcy sifnslhtne elqtaaakft
      121 kkdshgtlgr pfflfrprng rtiegseyhg i
//
LOCUS       XP_053915492             316 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128851340 [Cuculus canorus].
ACCESSION   XP_053915492
VERSION     XP_053915492.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059517.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 29% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..316
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..316
                     /product="uncharacterized protein LOC128851340"
                     /calculated_mol_wt=34622
     CDS             1..316
                     /gene="LOC128851340"
                     /coded_by="XM_054059517.1:1..951"
                     /db_xref="GeneID:128851340"
ORIGIN      
        1 maapalappp qrhpravprm wgpgdregga prappracah rpapprahrp argkgeserp
       61 tmecrpppfp ralappagrr spavgelkqf calsrkgldt stvgqekqws qtphyliyfe
      121 shtfsvvvtv drasptvlfi sqyqdhylhl asllkifpsy sslfpysyhs lsaspshapr
      181 glqirprlyl ppppspsgtf nnvhlqeeqs nnkpqilqhg hlltraaraa mapcrgsash
      241 aqpqetdpqs sngsdvddga sgscwwmspp hsqalhrkim eslrlgktsk iiqsnhqpnt
      301 tvptkpcpkv lhlhil
//
LOCUS       XP_053915709             150 aa            linear   VRT 09-MAR-2023
DEFINITION  dnaJ homolog subfamily C member 15-like [Cuculus canorus].
ACCESSION   XP_053915709
VERSION     XP_053915709.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059734.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 28% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..150
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..150
                     /product="dnaJ homolog subfamily C member 15-like"
                     /calculated_mol_wt=16952
     Region          <77..143
                     /region_name="DnaJ"
                     /note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
                     protein 40) proteins are highly conserved and play crucial
                     roles in protein translation, folding, unfolding,
                     translocation, and degradation. They act primarily by
                     stimulating the ATPase activity of Hsp70s; cl02542"
                     /db_xref="CDD:413365"
     CDS             1..150
                     /gene="LOC104063741"
                     /coded_by="XM_054059734.1:1..453"
                     /db_xref="GeneID:104063741"
ORIGIN      
        1 mlacwcwwdi flafkmlrnf gdendwrlly sgrlkacalk silgidfatv asaihyafhi
       61 wkpveqavte takrisnssl ssnrkggfeq kmskqeasli lfvspftgrt kirtaqrrim
      121 ilnhpdkdgs phlstkinea kdlsestdnd
//
LOCUS       XP_053915820             363 aa            linear   VRT 09-MAR-2023
DEFINITION  granulocyte-macrophage colony-stimulating factor receptor subunit
            alpha-like [Cuculus canorus].
ACCESSION   XP_053915820
VERSION     XP_053915820.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059845.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 9% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..363
                     /product="granulocyte-macrophage colony-stimulating factor
                     receptor subunit alpha-like"
                     /calculated_mol_wt=41707
     Region          88..168
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cl21522"
                     /db_xref="CDD:473895"
     Region          183..284
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(275..276,278..279)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..363
                     /gene="LOC128851390"
                     /coded_by="XM_054059845.1:1..1092"
                     /db_xref="GeneID:128851390"
ORIGIN      
        1 mtkmsekygn gvvkrmslfr piclpvekqy lgseelnnei tlskhtkich qgkftasgcf
       61 vphhyschre tcfqgrgmng taienfvcli fnvsfmncsw hanktssgdi qyflywktsr
      121 kedftecqny ikdgcgrntg crfqnvtien kkayfllnvs rsgqniqsyk ktiilheiek
      181 ltpplnvtvh ctkdshgcei wwqpprtshv krhacfkyev vienkvdhek niktaseier
      241 ritekscvfg sfsaekryrv kiratdngcl vstswgewst piefgkeqlt ssisymiflv
      301 plltaslvlf lctvsiylkk tsatvpqprn lfhelspvdf qteyknqlik heteeitiie
      361 eva
//
LOCUS       XP_053915942             595 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: cytoplasmic tyrosine-protein kinase BMX
            [Cuculus canorus].
ACCESSION   XP_053915942
VERSION     XP_053915942.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059967.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 1% of CDS bases
            internal stop codons :: corrected 2 genomic stop codon
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..595
                     /product="LOW QUALITY PROTEIN: cytoplasmic
                     tyrosine-protein kinase BMX"
                     /calculated_mol_wt=68780
     Region          14..>112
                     /region_name="PH-like"
                     /note="Pleckstrin homology-like domain; cl17171"
                     /db_xref="CDD:473070"
     Region          133..184
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(136,138,141,145,163..164,178,180..181)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212590"
     Region          207..313
                     /region_name="SH2"
                     /note="Src homology 2 (SH2) domain; cl15255"
                     /db_xref="CDD:472789"
     Site            order(221,240,267,269)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:198173"
     Site            order(268,295)
                     /site_type="other"
                     /note="hydrophobic binding pocket [polypeptide binding]"
                     /db_xref="CDD:198173"
     Region          331..587
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(342..345,348,350,362,364,392,408..411,455,459..460,
                     462,472..473)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270870"
     CDS             1..595
                     /gene="BMX"
                     /coded_by="XM_054059967.1:1..1788"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 2 bases at 2
                     genomic stop codons"
                     /db_xref="GeneID:104063417"
ORIGIN      
        1 mekkilleel llksqqkkki spinykkrlf vltkanlsyy eydkgkkkkr skresieikk
       61 iqcietvnle estspgrqyp fqivykggll yvyatneesr erwltalhkg lrqksgsppq
      121 vlstdksvln tavaqcnyep egnsaiqlvr snkyymleee dcdlwkvrdl egnegfvpni
      181 ylrklslded eprenssvse qtlaeeqsia khdwyagnif raqseqllrl kekeggfmvr
      241 kssqagmytv svfckvpexk xkrtvkryhi cktpedkyyl ienycfesil kvihyhqhns
      301 agmvtrlrhv vsthankvpe tallgngvwe lkqeeivllr elgsgqfgvv hlgkwkgqyd
      361 vaikmikega msedefieea qtmmklnhpk fvrlydicsk sypiyvvtey mpngcllvyl
      421 rnhgkelqpl qlleicydvc dtmalldscq fihrdlaarn clvdssltvk vsdfgmtryv
      481 lddlyvsslg tkfpvkwsap evfhytkfss ksdvwafgii lmremftlgk qpyecydnmq
      541 vikkvsqgyr lyrpqqvsdi tyqitcncwh elrekppafy qllscfealr ednta
//
LOCUS       XP_053916068             744 aa            linear   VRT 09-MAR-2023
DEFINITION  ralBP1-associated Eps domain-containing protein 2 [Cuculus
            canorus].
ACCESSION   XP_053916068
VERSION     XP_053916068.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060093.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 11% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..744
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..744
                     /product="ralBP1-associated Eps domain-containing protein
                     2"
                     /calculated_mol_wt=81147
     Region          <151..215
                     /region_name="EH"
                     /note="Eps15 homology domain; smart00027"
                     /db_xref="CDD:197477"
     Region          355..450
                     /region_name="EH"
                     /note="Eps15 homology domain; smart00027"
                     /db_xref="CDD:197477"
     Region          634..>728
                     /region_name="fliH"
                     /note="flagellar assembly protein H; Validated; PRK06669"
                     /db_xref="CDD:235850"
     CDS             1..744
                     /gene="REPS2"
                     /coded_by="XM_054060093.1:1..2235"
                     /db_xref="GeneID:104063415"
ORIGIN      
        1 mgwatgsrgg ddapqprvgv ltplplrlcv gprdsrgsal rhsdaiprip glatgasgkt
       61 rresrragvg ggspqggprg gagrqgagrg rtrrralrsp ggertfpapp rdgagpggsh
      121 rrprrrprra apaaeperaa apvaglpqpp agsgvrerlr asrlppdtll qitevcgakc
      181 vgyfgparfy ialkliaaaq sgfpvkiesi knvlpllqfm alkndsevhy gtpaelhgvk
      241 fqvphatlek nsykrtdegd kqepksppms picsppasps tyqriplsyg ygksrsgleq
      301 qhgapyevrh sthqqdgpss gnygakpsla cstlnrslsa ereqqdssah ysddpwrite
      361 eqrdyyinqf rslqpdlnaf isgsvaknff tksklpipel shiwelsdvd cdgaltlpef
      421 caafhlvvar kngyqlpetl petllpeylq aaslkplrdc alfdsysesl pgsqqtrdfs
      481 rtektsaeei rdnsallqdg kkddkqalkg ntalkmipke fqhltvktaa qesnalkarp
      541 rsrsysstsi edamkkgeep ptppprpqks hsrassldln kifqqntqav rsgwlppppp
      601 alpprpsvsq aeqvsevelq pqmnrtpsqa eenssakkev vlvqppskpa rrklrteaqg
      661 letpelspti nvtsslpavk hhhpvqkqss kqkraiqtai rknkeanavl arlnselqqq
      721 lkevhkeria letqleqlrp vtvl
//
LOCUS       XP_053916178             787 aa            linear   VRT 09-MAR-2023
DEFINITION  BEN domain-containing protein 2 [Cuculus canorus].
ACCESSION   XP_053916178
VERSION     XP_053916178.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060203.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..787
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..787
                     /product="BEN domain-containing protein 2"
                     /calculated_mol_wt=87207
     Region          <2..54
                     /region_name="PRK09751"
                     /note="putative ATP-dependent helicase Lhr; Provisional"
                     /db_xref="CDD:137505"
     Region          489..565
                     /region_name="BEN"
                     /note="The BEN domain is found in diverse animal proteins;
                     smart01025"
                     /db_xref="CDD:214981"
     Region          668..744
                     /region_name="BEN"
                     /note="The BEN domain is found in diverse animal proteins;
                     smart01025"
                     /db_xref="CDD:214981"
     CDS             1..787
                     /gene="BEND2"
                     /coded_by="XM_054060203.1:1..2364"
                     /db_xref="GeneID:128851418"
ORIGIN      
        1 mlrsatrtrs rprtstrdag rrvpgrprpa gparpaqprs lptvsslapq kplpfpaprs
       61 ghtclcparp arptggtrra mseedylsin veddeaviid hgengpsiqd cmsmeensev
      121 nsvvnhvael aygseglstl aeqvasqmsh sasmqrgngy npekmdflfs hnkrkrlaps
      181 llrqnvmrag egeyedsdsv vyeyepdyec gsivseasyt gdqqktlmev lcycqamyda
      241 iqkldrkfdl lhrkvsemqh trvkplvlrp eanvavetsl ensadwkpvg ftyrssshfp
      301 qgkirvqksm erepslhlss sgqgrhspvi rvalqnghiq vnstikhvpq slqlesqqpv
      361 hrqspplpti vsthslhssy taanrmpdls pqsnlvagvv estvnvasst vasstvasss
      421 mpvpsetslg nnavvanyks tsgsvniske lpsssvsinp sfefvgdpvr nvkvlgnylm
      481 karqktkpky aarylvrvlf pketllcsim gvsargrrtl dpnkiaaire flatnfpsyd
      541 lsehgkdwkt citnvnamir clrsetkvkp etaegkekva dapdtshcvd lnynedsegn
      601 fqnsqkmtns ttdklensel dkfpeafhtp svrkthslep mellgspwrn vqlpfsviyv
      661 akgksrpels arylirhmft edvlvksnvy gnlergmspl dcnrinalrd flqenypsfd
      721 lketgydwka cvaainstir slrhdhkkak vgirrkalav prlnaksppq sptsvrpfes
      781 dtinlmd
//
LOCUS       XP_053916281            3186 aa            linear   VRT 09-MAR-2023
DEFINITION  cilia- and flagella-associated protein 47 [Cuculus canorus].
ACCESSION   XP_053916281
VERSION     XP_053916281.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060306.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3186
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3186
                     /product="cilia- and flagella-associated protein 47"
                     /calculated_mol_wt=355407
     Region          1226..>1295
                     /region_name="Motile_Sperm"
                     /note="MSP (Major sperm protein) domain; pfam00635"
                     /db_xref="CDD:459882"
     Region          1721..1848
                     /region_name="CH_SF"
                     /note="calponin homology (CH) domain superfamily; cl00030"
                     /db_xref="CDD:469584"
     Site            order(1735,1806,1808..1809,1812..1813,1815,1827..1831,
                     1836,1838..1839,1841..1842,1845..1846)
                     /site_type="other"
                     /note="actin binding site [polypeptide binding]"
                     /db_xref="CDD:409031"
     CDS             1..3186
                     /gene="CFAP47"
                     /coded_by="XM_054060306.1:1..9561"
                     /db_xref="GeneID:104057395"
ORIGIN      
        1 mnqtdrvsss dwrvckrrsl apnhraasva erpsccaasa maggcrdaag vriapaelrf
       61 egavpggryr aalsvqnrrr escrlqllpp rrpqfklive npgkpvapgl qvtafveyyp
      121 dsaedvedrm lllveddaid ipllgliqsc hleveseinf gavianskii skkfsivnhg
      181 lssgtfeisy dgvvllniep tsgvvepksv krvkvdictd vpriikevik veledqgctq
      241 vwvkaavveq vlkvlgvscg nmlecinfgp vyfgcskteq islynespes vswvavledn
      301 aiggemgtdl qrsadaalqd lslknstrhv dvstlilcip nqgtllpyek slvtlcfspk
      361 kferdsgvnd sslkqdyvlf lrfeaagnna gylqafsdga taitmnhphd melaltgsgi
      421 pvmltfnpgp vinfincfpg eqtqvrctlk neseslpvtf sfrktahfni spekgkitek
      481 sakdviftfs phqigtfkvk qvvdiigtvl ekkslrilkt ksiqqiylsf igvckskrkn
      541 iifkinpgit pmisnetgqf vadgtgqctd tapvailkst qtkihthqin rscksnalta
      601 fpndraasir pgewnktyrt iftktdryny idpeftytds erlskeahke yytdfisslr
      661 whrlqrgasr qfniynnsvs iglkpaeglm spkisvtdfh kekvefemlp sdenclltsr
      721 klaamgskss ikeiwnglna vpsstqeked csltltskql hqvligpstm dfgdvclnst
      781 tarklhiinn llvhiwiqie meidelqqts plsqvvpplt kthipvvfep ntlgmfkrsf
      841 tytinnqhsg hvlvvakavs velqlsaeev ilnpirgyla gtefrttvsi cnprnhpaef
      901 twkpiatdrg tvfsiepvkg fveaysdlec eviwqpgfss peagefnlcv rkgntvklkc
      961 fvklgttkvq fmeqkipfhh splglstcnt ailqntgynh ayyqvldtsp lpgmtitpse
     1021 gvvpvgghad lqisftpnak msfstrveva vrnsrvlvlr idgfveipei nidvevfdfe
     1081 gvyvgsmksi pfllqnngqa ctrvefdfsk hkdfklntnd hsvvnccssn pylysvnlkg
     1141 ksalqcllsf vpkkvaaydf tlpvntprtn fpltqpssps atsvgsvkhi lapqpqmvav
     1201 avplcrvkav glnsplefss melkflqhss airfnivdes lnsqklelkn itgqqltwkl
     1261 ncddagentd drifkfspqs gfldpgqkis iavffcpscp gtytselsvs lngnpshyki
     1321 alsgilkspk ikfdppflml ipvpldvtse rainiipqdy lrqsqiqvei peleledgdr
     1381 iypfsvqfpk eqdvfllsdg tnkeltchvs frssrpmsfl gniffideee nrfslqvaat
     1441 aenclltlyp ylalhrsdqq vilrsrsdsn fetesdemis ensetgsqsd grennselsf
     1501 fpdedkkeyi ffqktltaik nwftlfgwst gqnpisiphs lrrdvckvqm tssqekglkk
     1561 ilyknttsiy dmivylsgqw lpgitlsqsl pldpvervlq lycqhstmla fltsqgacls
     1621 hvmpeflfep deykkwievr tvqkshsael ekgnvknsdi lsnshlfvle dsafetmskr
     1681 awtdvllqvy kvfvlprvps rniadqfsle svqhiprirs eplssniysp yerailtwln
     1741 khyeenrktv wkncqkggvp pmrwivnfdr dlldglvlaa qlaaycpyli athfvrmytn
     1801 prtpaqflhn clilvnamha vslatgikat dicdpnpvml lilcvylyet lphylpknti
     1861 eftgalhatv vkqvllknps sktltystil vgrdaddflv pkgntvtiap rrqtsinvef
     1921 tsrflrpaea vllliakkvg gidgatlafs lksevkhikp ahilkckspc yelkkvilnv
     1981 tnpfrtdgmf rvillestsy smhpekvyqa kqvkqeqtfs senkilnlkk dalpedttee
     2041 nylncsdqss llheffcpie elflerkssa gldihflpfy mekryctvil vneligefiy
     2101 liegtgdipl psallpmdsp nilhfsstle gasagepvly lkcsltqile enlripline
     2161 srekalaiaa qqqmstteyk rrkvtgtlqs ssvrvatall glsrierhal lkphkflpel
     2221 kyveysvevs mqdffevpek fsipvlassr vnfkvpsard lssqkpdksd avelpikfip
     2281 rcagcyrcqi llksscdvrv yeiecvvntd haeaelefvt payqaviqdi pisnmsnqdw
     2341 kleaileged fygpslinvg lgetalyplt fkpvtecitm grlilrngta gtenifrlkg
     2401 vgkkplaqdh ividcqvrkv tqkillvpny tkkmltykvf sdlsmvggtp vitvepgdtv
     2461 pytlsvspwr rgifqgiisf vaevedqqqs qhnsspentd geqalqkltt etpqtvvaan
     2521 vgrsssnckv wfslkinsip aaperridvk craldtigip ipitnptdki lqlsvvlenq
     2581 slsgqkaivl spkqtltyqi efspavvgss desvlflsdv igefwyalkl tvekplptnl
     2641 peiecelgkw ahlyiplcnp thetleleii nsnpsnfstd adpkhpliva phsttevpvq
     2701 fypsalgrgs hkasiafrcs qlkewmfyls giglppelmk ptsisacigq gssaiisfkn
     2761 ptlenvlvdv mltdqeqlgc hpsasvlfks tskesafhil lkqprgklla pkeelditvl
     2821 fmpdtmkmye ilvvihvmre ngenwpyeds aelnkdlrrr vtvaenggiq gilwiypvhg
     2881 ipeaprqklv pdvircqarq rverrvevll pgvvpatnat pvtrnsavvn tnkpaniqei
     2941 vqvtdgfstt reflyelqyq sneiksqlea ligmhliere wdtesrivtl ifnvvftpnk
     3001 pmrneatliv qcttggiwkf pmlfiatepe vddvinieav glnkesvvgf kltsqtrnpe
     3061 pftahflags dpeflvlpqa gvllpagtmg thitvgfkpr mygkkhtatl vietqsmqwm
     3121 yeinglppqt vpptspakvv stssyvrsat vrqrnflren lqltttgpss pvkgaplvlr
     3181 tksrkf
//
LOCUS       XP_009556907             354 aa            linear   VRT 09-MAR-2023
DEFINITION  ornithine transcarbamylase, mitochondrial [Cuculus canorus].
ACCESSION   XP_009556907
VERSION     XP_009556907.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009558612.2
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556907.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 7% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..354
                     /product="ornithine transcarbamylase, mitochondrial"
                     /calculated_mol_wt=40090
     Region          35..342
                     /region_name="ArgF"
                     /note="Ornithine carbamoyltransferase [Amino acid
                     transport and metabolism]; COG0078"
                     /db_xref="CDD:439848"
     CDS             1..354
                     /gene="OTC"
                     /coded_by="XM_009558612.2:1..1065"
                     /db_xref="GeneID:104057274"
ORIGIN      
        1 mlfnvrnifs iakptrtske mlrqfwygqp aqmnvhlkgr dlltlhnyta delkyllwma
       61 sdlkqrikhk geylplmqgk slamifekrs trtrlsaetg fallggypsf lttqdihlgt
      121 nesltdtarv lscmtnaila rvykhndldl mtkeatipii nglsdlyhpl qiladyltlq
      181 ehygglnglt itwigdgnnv lhsimtsaak lgmhlciatp kgfepdlrit eiseqyskey
      241 gtklllttdp leaaaganvl itdtwismgq eeekkerlka fqgyqitmqt aksaasnwtf
      301 lhclprkhee vddevfyspq slvfqeaenr kwtimavmvs lltdyspqlq kptf
//
LOCUS       XP_053916481           13521 aa            linear   VRT 09-MAR-2023
DEFINITION  mucin-16-like [Cuculus canorus].
ACCESSION   XP_053916481
VERSION     XP_053916481.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060506.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 100% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..13521
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..13521
                     /product="mucin-16-like"
                     /calculated_mol_wt=1311362
     Region          172..1828
                     /region_name="FhaB"
                     /note="Large exoprotein involved in heme utilization or
                     adhesion [Intracellular trafficking, secretion, and
                     vesicular transport]; COG3210"
                     /db_xref="CDD:442443"
     Region          2206..3892
                     /region_name="FhaB"
                     /note="Large exoprotein involved in heme utilization or
                     adhesion [Intracellular trafficking, secretion, and
                     vesicular transport]; COG3210"
                     /db_xref="CDD:442443"
     Region          3238..4924
                     /region_name="FhaB"
                     /note="Large exoprotein involved in heme utilization or
                     adhesion [Intracellular trafficking, secretion, and
                     vesicular transport]; COG3210"
                     /db_xref="CDD:442443"
     Region          4786..6472
                     /region_name="FhaB"
                     /note="Large exoprotein involved in heme utilization or
                     adhesion [Intracellular trafficking, secretion, and
                     vesicular transport]; COG3210"
                     /db_xref="CDD:442443"
     Region          5818..7504
                     /region_name="FhaB"
                     /note="Large exoprotein involved in heme utilization or
                     adhesion [Intracellular trafficking, secretion, and
                     vesicular transport]; COG3210"
                     /db_xref="CDD:442443"
     Region          7333..9037
                     /region_name="FhaB"
                     /note="Large exoprotein involved in heme utilization or
                     adhesion [Intracellular trafficking, secretion, and
                     vesicular transport]; COG3210"
                     /db_xref="CDD:442443"
     Region          8383..10069
                     /region_name="FhaB"
                     /note="Large exoprotein involved in heme utilization or
                     adhesion [Intracellular trafficking, secretion, and
                     vesicular transport]; COG3210"
                     /db_xref="CDD:442443"
     Region          9415..11101
                     /region_name="FhaB"
                     /note="Large exoprotein involved in heme utilization or
                     adhesion [Intracellular trafficking, secretion, and
                     vesicular transport]; COG3210"
                     /db_xref="CDD:442443"
     Region          10447..12133
                     /region_name="FhaB"
                     /note="Large exoprotein involved in heme utilization or
                     adhesion [Intracellular trafficking, secretion, and
                     vesicular transport]; COG3210"
                     /db_xref="CDD:442443"
     Region          11479..13165
                     /region_name="FhaB"
                     /note="Large exoprotein involved in heme utilization or
                     adhesion [Intracellular trafficking, secretion, and
                     vesicular transport]; COG3210"
                     /db_xref="CDD:442443"
     Region          <13260..>13397
                     /region_name="Hamartin"
                     /note="Hamartin protein; pfam04388"
                     /db_xref="CDD:461287"
     CDS             1..13521
                     /gene="LOC128851456"
                     /coded_by="XM_054060506.1:1..40566"
                     /db_xref="GeneID:128851456"
ORIGIN      
        1 mtylslsepa tqsaapslst seplaaasgt spasrntqgs lsstqattte mqsgrltsta
       61 vtrekgttep gdtasptrsp lptattaaat sidttprsqs eiptinqass tmaepntkas
      121 lslsatsltt fsttrrvgte aktdtvptmp aqegsspaps agteatspaf pttrsqatat
      181 gvgtasasaa svspspssaa tshsssspag ssaatpnpqr sstggttess sattshpsta
      241 nvssmanvsp alsshpgtss agsgavtaea stqttapsts spkpsastsg tspasdntqg
      301 rpfptlastm gtqavrltst tvtqqqvtte pgaassstrs pfpsvatasa tsltvhppsq
      361 sqittinqgs gttaepytkt slspsataqt slsttrlegt raktetvpmt ptqkrssptv
      421 ptgtqaaspt fpttrphata tstgtasasa asvspspssa atshsssspa gpsaatpnpq
      481 rstasgttes ssatpaqpst afvsstpsst pglsgigtgg tteqaatqsa apslstseps
      541 aaasgtspas rntqgslsst qatttemqsg rltstavtrg kgttepgdta sptrsplpta
      601 ttaaatsidt tprsqseipt inqasstmae pntkaslsls atslttfstt rrvgteaktd
      661 tvptmpaqeg sspapsagte atspafpttr sqatatdntq grpfptlast mgtqavrlts
      721 ttvtqqqvtt epgaassstr spfpsvatas atsltvhpps qsqittvnqg sgttaepytk
      781 tslspsataq tslsttrleg traktetvpm tptqkwsspt vptgtqaasp tfpttrphaa
      841 atstgtasas aasvspspss aatshssssp agpsaatpnp qrstasgtte sssatpaqps
      901 tafvsstpss tpglsgigtg gtteqaatqs aapslstsep satasgtspa srntqgslss
      961 tqatttemqs grltstavtr gkgttepgdt asptrsplpt attaaatsid ttprsqseip
     1021 tinqasstma epntkaslsl satslttfst trrvgteakt dtvptmpaqe gsspapsagt
     1081 eatspafptt rsqatatgvg tasasaasvs pspssaatsh sssspagssa atpnpqrsst
     1141 ggttesssat tshpstanvs stanvspals shpgtssags gavtaeastq ttapstsspk
     1201 psastsgtsp asdntqgrpf ptlastmgtq avrltsttvt qqqvttepga assstrspfp
     1261 svatasatsl tvhppsqsqi ttvnqgsgtt aepytktsls psataqtsls ttrlegtrak
     1321 tetvpmtptq krssptvptg tqaasptfpt trphaaatst gtasasaasv spspssaats
     1381 hsssspagps aatpnpqrst asgttesssa tpaqpstafv sstpsstpgl sgigtggtte
     1441 qaatqsaaps lstsepsata sgtspasrnt qgslsstqat ttemqsgrlt stavtrgkgt
     1501 tepgdtaspt rsplptatta aatsidttpr sqseiptinq asstmaepnt kaslslsats
     1561 lttfsttrrv gteaktdtvp tmpaqegssp apsagteats pafpttrsqa tatgvgtasa
     1621 saasvspsps saatshssss pagssaatpn pqrsstggtt esssattshp stanvsstan
     1681 vspalsshpg tssagsgavt aeastqttap stsspkpsas tsgtspasdn tqgrpfptla
     1741 stmgtqavrl tsttvtqqqv ttepgaasss trspfpsvat asatsltvhp psqsqittvn
     1801 qgsgttaepy tktslspsat aqtslsttrl egtraktetv pmtptqkrss ptvptgtqaa
     1861 sptfpttrph aaatstgtas asaasvspsp ssaatshsss spagpsaatp npqrstasgt
     1921 tesssatpaq pstafvsstp sstpglsgig tggmteqaat qsaapslsts epsaaasgts
     1981 pasrntqgsl sstqatttem qsgrltstav trgkgttepg dtasptrspl ptattaaats
     2041 idmtprsqse iptinqasst maepntkasl slsatslttf sttrrvgtea ktdtvptmpa
     2101 qegsspapsa gteatspafp ttrsqatatg vgtasasaas vspspssaat shsssspags
     2161 saatpnpqrs stggttesss attshpstan vsstanvspv lsshpgtssa gsgavtaeas
     2221 tqttapstss pkpsastsgt spasdntqgr pfptlastmg tqavrltstt vtqqqvttep
     2281 gaassstrsp fpsvatasat sltvhppsqs qittvnqgsg ttaepytkts lspsataqts
     2341 lsttrlegtr aktetvpmtp tqkrssptvp tgtqaasptf pttrphaaat stgtasasaa
     2401 svspspssaa tshsssspag psaatpnpqr stasgttess satpaqpsta fvsstpsstp
     2461 glsgigtggt teqaatqsaa pslstsepsa aasgtspasr ntqgslsstq atttemqsgr
     2521 ltstavtrgk gttepgdtas ptrsplptat taaatsidtt prsqseipti nqasstmaep
     2581 ntkaslslsa tslttfsttr rvgteaktdt vptmpaqegs spapsagtea tspafpttrs
     2641 qatatgvgta sasaasvsps pssaatshss sspagssaat pnpqrsstgg ttesssatts
     2701 hpstanvsst anvspalssh pgtssagsga vtaeastqtt apstsspkps astsgtspas
     2761 dntqgrpfpt lastmgtqav rltsttvtqq qvttepgaas sstrspfpsv atasatsltv
     2821 hppsqsqitt vnqgsgttae pytktslsps ataqtslstt rlegtrakte tvpmtptqkr
     2881 ssptvptgtq aasptfpttr phaaatstgt asasaasvsp spssaatshs ssspagpsaa
     2941 tpnpqrstas gttesssatp aqpstafvss tpsstpglsg igtggtteqa atqsaapsls
     3001 tsepsaaasg tspasrntqg slsstqattt emqsgrltst avtrgkgtte pgdtasptrs
     3061 plptattaaa tsidttprsq seiptinqas stmaepntka slslsatslt tfsttrrvgt
     3121 eaktdtvptm paqegsspap sagteatspa fpttrsqata tgvgtasasa asvspspssa
     3181 atshsssspa gssaatpnpq rsstggttes ssattshpst anvsstanvs pvlsshpgts
     3241 sagsgavtae astqttapst sspkpsasts gtspasdntq grpfptlast mgtqavrlts
     3301 ttvtqqqvtt epgaassstr spfpsvatas atsltvhpps qsqittvnqg sgttaepytk
     3361 tslspsataq tslsttrleg traktetvpm tptqkrsspt vptgtqaasp tfpttrphaa
     3421 atstgtasas aasvspspss aatshssssp agpsaatpnp qrstasgtte sssatpaqps
     3481 tafvsstpss tpglsgigtg gtteqaatqs aapslstsep saaasgtspa srntqgslss
     3541 tqatttemqs grltstavtr gkgttepgdt asptrsplpt attaaatsid ttprsqseip
     3601 tinqasstma epntkaslsl satslttfst trrvgteakt dtvptmpaqe gsspapsagt
     3661 eatspafptt rsqatatgvg tasasaasvs pspssaatsh sssspagssa atpnpqrsst
     3721 ggttesssat tshpstanvs stanvspals shpgtssags gavtaeastq ttapstsspk
     3781 psastsgtsp asdntqgrpf ptlastmgtq avrltsttvt qqqvttepga assstrspfp
     3841 svatasatsl tvhppsqsqi ttvnqgsgtt aepytktsls psataqtsls ttrlegtrak
     3901 tetvpmtptq krssptvptg tqaasptfpt trphaaatst gtasasaasv spspssaats
     3961 hsssspagps aatpnpqrst asgttesssa tpaqpstafv sstpsstpgl sgigtggtte
     4021 qaatqsaaps lstsepsaaa sgtspasrnt qgslsstqat ttemqsgrlt stavtrgkgt
     4081 tepgdtaspt rsplptatta aatsidttpr sqseiptinq asstmaepnt kaslslsats
     4141 lttfsttrrv gteaktdtvp tmpaqegssp apsagteats pafpttrsqa tatgvgtasa
     4201 saasvspsps saatshssss pagssaatpn pqrsstggtt esssattshp stanvsstan
     4261 vspalsshpg tssagsgavt aeastqttap stsspkpsas tsgtspasdn tqgrpfptla
     4321 stmgtqavrl tsttvtqqqv ttepgaasss trspfpsvat asatsltvhp psqsqittvn
     4381 qgsgttaepy tktslspsat aqtslsttrl egtraktetv pmtptqkrss ptvptgtqaa
     4441 sptfpttrph aaatstgtas asaasvspsp ssaatshsss spagpsaatp npqrstasgt
     4501 tesssatpaq pstafvsstp sstpglsgig tggtteqaat qsaapslsts epsaaasgts
     4561 pasrntqgsl sstqatttem qsgrltstav trgkgttepg dtasptrspl ptattaaats
     4621 idttprsqse iptinqasst maepntkasl slsatslttf sttrrvgtea ktdtvptmpa
     4681 qegsspapsa gteatspafp ttrsqatatg vgtasasaas vspspssaat shsssspags
     4741 saatpnpqrs stggttesss attshpstan vsstanvspa lsshpgtssa gsgavtaeas
     4801 tqttapstss pkpsastsgt spasdntqgr pfptlastmg tqavrltstt vtqqqvttep
     4861 gaassstrsp fpsvatasat sltvhppsqs qittvnqgsg ttaepytkts lspsataqts
     4921 lsttrlegtr aktetvpmtp tqkrssptvp tgtqaasptf pttrphaaat stgtasasaa
     4981 svspspssaa tshsssspag psaatpnpqr stasgttess satpaqpsta fvsstpsstp
     5041 glsgigtggt teqaatqsaa pslstsepsa aasgtspasr ntqgslsstq atttemqsgr
     5101 ltstavtrgk gttepgdtas ptrsplptat taaatsidtt prsqseipti nqasstmaep
     5161 ntkaslslsa tslttfsttr rvgteaktdt vptmpaqegs spapsagtea tspafpttrs
     5221 qatatgvgta sasaasvsps pssaatshss sspagssaat pnpqrsstgg ttesssatts
     5281 hpstanvsst anvspalssh pgtssagsga vtaeastqtt apstsspkps astsgtspas
     5341 dntqgrpfpt lastmgtqav rltsttvtqq qvttepgaas sstrspfpsv atasatsltv
     5401 hppsqsqitt vnqgsgttae pytktslsps ataqtslstt rlegtrakte tvpmtptqkr
     5461 ssptvptgtq aasptfpttr phaaatstgt asasaasvsp spssaatshs ssspagpsaa
     5521 tpnpqrstas gttesssatp aqpstafvss tpsstpglsg igtggtteqa atqsaapsls
     5581 tsepsaaasg tspasrntqg slsstqattt emqsgrltst avtrgkgtte pgdtasptrs
     5641 plptattaaa tsidttprsq seiptinqas stmaepntka slslsatslt tfsttrrvgt
     5701 eaktdtvptm paqegsspap sagteatspa fpttrsqata tgvgtasasa asvspspssa
     5761 atshsssspa gssaatpnpq rsstggttes ssattshpst anvsstanvs palsshpgts
     5821 sagsgavtae astqttapst sspkpsasts gtspasdntq grpfptlast mgtqavrlts
     5881 ttvtqqqvtt epgaassstr spfpsvatas atsltvhpps qsqittvnqg sgttaepytk
     5941 tslspsataq tslsttrleg traktetvpm tptqkrsspt vptgtqaasp tspttrphaa
     6001 atstgtasas aasvspspss aatshssssp agpsaatpnp qrstasgtte sssatpaqps
     6061 tafvsstpss tpglsgigtg gtteqaatqs aapslstsep saaasgtspa srntqgslss
     6121 tqatttemqs grltstavtr gkgttepgdt asptrsplpt attaaatsid ttprsqseip
     6181 tinqasstma epntkaslsl satslttfst trrvgteakt dtvptmpaqe gsspapsagt
     6241 eatspafptt rsqatatgvg tasasaasvs pspssaatsh sssspagssa atpnpqrsst
     6301 ggttesssat tshpstanvs stanvspals shpgtssags gavtaeastq ttapstsspk
     6361 psastsgtsp asdntqgrpf ptlastmgtq avrltsttvt qqqvttepga assstrspfp
     6421 svatasatsl tvhppsqsqi ttvnqgsgtt aepytktsls psataqtsls ttrlegtrak
     6481 tetvpmtptq krssptvptg tqaasptspt trphaaatst gtasasaasv spspssaats
     6541 hsssspagps aatpnpqrst asgttesssa tpaqpstafv sstpsstpgl sgigtggtte
     6601 qaatqsaaps lstsepsaaa sgtspasrnt qgslsstqat ttemqsgrlt stavtrgkgt
     6661 tepgdtaspt rsplptatta aatsidttpr sqseiptinq asstmaepnt kaslslsats
     6721 lttfsttrrv gteaktdtvp tmpaqegssp apsagteats pafpttrsqa tatgvgtasa
     6781 saasvspsps saatshssss pagssaatpn pqrsstggtt esssattshp stanvsstan
     6841 vspalsshpg tssagsgavt aeastqttap stsspkpsas tsgtspasdn tqgrpfptla
     6901 stmgtqavrl tsttvtqqqv ttepgaasss trspfpsvat asatsltvhp psqsqittvn
     6961 qgsgttaepy tktslspsat aqtslsttrl egtraktetv pmtptqkrss ptvptgtqaa
     7021 sptspttrph aaatstgtas asaasvspsp ssaatshsss spagpsaatp npqrstasgt
     7081 tesssatpaq pstafvsstp sstpglsgig tggtteqaat qsaapslsts epsaaasgts
     7141 pasrntqgsl sstqatttem qsgrltstav trgkgttepg dtasptrspl ptattaaats
     7201 idttprsqse iptinqasst maepntkasl slsatslttf sttrrvgtea ktdtvptmpa
     7261 qegsspapsa gteatspafp ttrsqatatg vgtasasaas vspspssaat shsssspags
     7321 saatpnpqrs stggttesss attshpstan vsstanvspa lsshpgtssa gsgavtaeas
     7381 tqttapstss pkpsastsgt spasdntqgr pfptlastmg tqavrltstt vtqqqvttep
     7441 gaassstrsp fpsvatasat sltvhppsqs qittvnqgsg ttaepytkts lspsataqts
     7501 lsttrlegtr aktetvpmtp tqkrssptvp tgtqaaspts pttrphaaat stgtasasaa
     7561 svspspssaa tshsssspag psaatpnpqr stasgttess satpaqpsta fvsstpsstp
     7621 glsgigtggt teqaatqsaa pslstsepsa aasgtspasr ntqgslsstq atttemqsgr
     7681 ltstavtrgk gttepgdtas ptrsplptat taaatsidtt prsqseipti nqasstmaep
     7741 ntkaslslsa tslttfsttr rvgteaktdt vptmpaqegs spapsagtea tspafpttrs
     7801 qatatgvgta sasaasvsps pssaatshss sspagssaat pnpqrsstgg ttesssatts
     7861 hpstanvsst rwigrcdgrg vdsdhssqhv qpqavgihlr hvpasdntqg rpfptlastm
     7921 gtqavrltst tvtqqqvtte pgaassstrs pfpsvatasa tsltvhppsq sqittvnqgs
     7981 gttaepytkt slspsataqt slsttrlegt raktetvpmt ptqkrssptv ptgtqaaspt
     8041 spttrphaaa tstgtasasa asvspspssa atshsssspa gpsaatpnpq rstasgttes
     8101 ssatpaqpst afvsstpsst pglsgigtgg tteqaatqsa apslstseps aaasgtspas
     8161 rntqgslsst qatttemqsg rltstavtrg kgttepgdta sptrsplpta ttaaatsidt
     8221 tprsqseipt inqasstmae pntkaslsls atslttfstt rrvgteaktd tvptmpaqeg
     8281 sspapsagte atspafpttr sqatatgvgt asasaasvsp spssaatshs ssspagssaa
     8341 tpnpqrsstg gttesssatt shpstanvss tanvspalss hpgtssagsg avtaeastqt
     8401 tapstsspkp sastsgtspa sdntqgrpfp tlastmgtqa vrltsttvtq qqvttepgaa
     8461 ssstrspfps vatasatslt vhppsqsqit tvnqgsgtta epytktslsp sataqtslst
     8521 trlegtrakt etvpmtptqk rssptvptgt qaasptfptt rphaaatstg tasasaasvs
     8581 pspssaatsh sssspagpsa atpnpqrsta sgttesssat paqpstafvs stpsstpgls
     8641 gigtggtteq aatqsaapsl stsepsaaas gtspasrntq gslsstqatt temqsgrlts
     8701 tavtrgkgtt epgdtasptr splptattaa atsidttprs qseiptinqa sstmaepntk
     8761 aslslsatsl ttfsttrrvg teaktdtvpt mpaqegsspa psagteatsp afpttrsqat
     8821 atgvgtasas aasvspspss aatshssssp agssaatpnp qrsstggtte sssattshps
     8881 tanvsstanv spalsshpgt ssagsgavta eastqttaps tsspkpsast sgtspasdnt
     8941 qgrpfptlas tmgtqavrlt sttvtqqqvt tepgaassst rspfpsvata satsltvhpp
     9001 sqsqittvnq gsgttaepyt ktslspsata qtslsttrle gtraktetvp mtptqkrssp
     9061 tvptgtqaas ptfpttrpha aatstgtasa saasvspsps saatshssss pagpsaatpn
     9121 pqrstasgtt esssatpaqp stafvsstps stpglsgigt ggtteqaatq saapslstse
     9181 psaaasgtsp asrntqgsls stqatttemq sgrltstavt rgkgttepgd tasptrsplp
     9241 tattaaatsi dttprsqsei ptinqasstm aepntkasls lsatslttfs ttrrvgteak
     9301 tdtvptmpaq egsspapsag teatspafpt trsqatatgv gtasasaasv spspssaats
     9361 hsssspagss aatpnpqrss tggttesssa ttshpstanv sstanvspal sshpgtssag
     9421 sgavtaeast qttapstssp kpsastsgts pasdntqgrp fptlastmgt qavrltsttv
     9481 tqqqvttepg aassstrspf psvatasats ltvhppsqsq ittvnqgsgt taepytktsl
     9541 spsataqtsl sttrlegtra ktetvpmtpt qkrssptvpt gtqaasptsp ttrphaaats
     9601 tgtasasaas vspspssaat shsssspagp saatpnpqrs tasgttesss atpaqpstaf
     9661 vsstpsstpg lsgigtggtt eqaatqsaap slstsepsaa asgtspasrn tqgslsstqa
     9721 tttemqsgrl tstavtrgkg ttepgdtasp trsplptatt aaatsidttp rsqseiptin
     9781 qasstmaepn tkaslslsat slttfsttrr vgteaktdtv ptmpaqegss papsagteat
     9841 spafpttrsq atatgvgtas asaasvspsp ssaatshsss spagssaatp npqrsstggt
     9901 tesssattsh pstanvssta nvspalsshp gtssagsgav taeastqtta pstsspkpsa
     9961 stsgtspasd ntqgrpfptl astmgtqavr ltsttvtqqq vttepgaass strspfpsva
    10021 tasatsltvh ppsqsqittv nqgsgttaep ytktslspsa taqtslsttr legtraktet
    10081 vpmtptqkrs sptvptgtqa asptspttrp haaatstgta sasaasvsps pssaatshss
    10141 sspagpsaat pnpqrstasg ttesssatpa qpstafvsst psstpglsgi gtggtteqaa
    10201 tqsaapslst sepsaaasgt spasrntqgs lsstqattte mqsgrltsta vtrgkgttep
    10261 gdtasptrsp lptattaaat sidttprsqs eiptinqass tmaepntkas lslsatsltt
    10321 fsttrrvgte aktdtvptmp aqegsspaps agteatspaf pttrsqatat gvgtasasaa
    10381 svspspssaa tshsssspag ssaatpnpqr sstggttess sattshpsta nvsstanvsp
    10441 alsshpgtss agsgavtaea stqttapsts spkpsastsg tspasdntqg rpfptlastm
    10501 gtqavrltst tvtqqqvtte pgaassstrs pfpsvatasa tsltvhppsq sqittvnqgs
    10561 gttaepytkt slspsataqt slsttrlegt raktetvpmt ptqkrssptv ptgtqaaspt
    10621 spttrphaaa tstgtasasa asvspspssa atshsssspa gpsaatpnpq rstasgttes
    10681 ssatpaqpst afvsstpsst pglsgigtgg tteqaatqsa apslstseps aaasgtspas
    10741 rntqgslsst qatttemqsg rltstavtrg kgttepgdta sptrsplpta ttaaatsidt
    10801 tprsqseipt inqasstmae pntkaslsls atslttfstt rrvgteaktd tvptmpaqeg
    10861 sspapsagte atspafpttr sqatatgvgt asasaasvsp spssaatshs ssspagssaa
    10921 tpnpqrsstg gttesssatt shpstanvss tanvspalss hpgtssagsg avtaeastqt
    10981 tapstsspkp sastsgtspa sdntqgrpfp tlastmgtqa vrltsttvtq qqvttepgaa
    11041 ssstrspfps vatasatslt vhppsqsqit tvnqgsgtta epytktslsp sataqtslst
    11101 trlegtrakt etvpmtptqk rssptvptgt qaasptsptt rphaaatstg tasasaasvs
    11161 pspssaatsh sssspagpsa atpnpqrsta sgttesssat paqpstafvs stpsstpgls
    11221 gigtggtteq aatqsaapsl stsepsaaas gtspasrntq gslsstqatt temqsgrlts
    11281 tavtrgkgtt epgdtasptr splptattaa atsidttprs qseiptinqa sstmaepntk
    11341 aslslsatsl ttfsttrrvg teaktdtvpt mpaqegsspa psagteatsp afpttrsqat
    11401 atgvgtasas aasvspspss aatshssssp agssaatpnp qrsstggtte sssattshps
    11461 tanvsstanv spalsshpgt ssagsgavta eastqttaps tsspkpsast sgtspasdnt
    11521 qgrpfptlas tmgtqavrlt sttvtqqqvt tepgaassst rspfpsvata satsltvhpp
    11581 sqsqittvnq gsgttaepyt ktslspsata qtslsttrle gtraktetvp mtptqkrssp
    11641 tvptgtqaas ptspttrpha aatstgtasa saasvspsps saatshssss pagpsaatpn
    11701 pqrstasgtt esssatpaqp stafvsstps stpglsgigt ggtteqaatq saapslstse
    11761 psaaasgtsp asrntqgsls stqatttemq sgrltstavt rgkgttepgd tasptrsplp
    11821 tattaaatsi dttprsqsei ptinqasstm aepntkasls lsatslttfs ttrrvgteak
    11881 tdtvptmpaq egsspapsag teatspafpt trsqatatgv gtasasaasv spspssaats
    11941 hsssspagss aatpnpqrss tggttesssa ttshpstanv sstanvspal sshpgtssag
    12001 sgavtaeast qttapstssp kpsastsgts pasdntqgrp fptlastmgt qavrltsttv
    12061 tqqqvttepg aassstrspf psvatasats ltvhppsqsq ittvnqgsgt taepytktsl
    12121 spsataqtsl sttrlegtra ktetvpmtpt qkrssptvpt gtqaasptsp ttrphaaats
    12181 tgtasasaas vspspssaat shsssspagp saatpnpqrs tasgttesss atpaqpstaf
    12241 vsstpsstpg lsgigtggtt eqaatqsaap slstsepsaa asgtspasrn tqgslsstqa
    12301 tttemqsgrl tstavtrgkg ttepgdtasp trsplptatt aaatsidttp rsqseiptin
    12361 qasstmaepn tkaslslsat slttfsttrr vgteaktdtv ptmpaqegss papsagteat
    12421 spafpttrsq atatgvgtas asaasvspsp ssaatshsss spagssaatp npqrsstggt
    12481 tesssattsh pstanvssta nvspalsshp gtssagsgav taeastqtta pstsspkpsa
    12541 stsgtspasd ntqgrpfptl astmgtqavr ltsttvtqqq vttepgaass strspfpsva
    12601 tasatsltvh ppsqsqittv nqgsgttaep ytktslspsa taqtslsttr legtraktet
    12661 vpmtptqkrs sptvptgtqa asptspttrp haaatstgta sasaasvsps pssaatshss
    12721 sspagpsaat pnpqrstasg ttesssatpa qpstafvsst psstpglsgi gtggtteqaa
    12781 tqsaapslst sepsaaasgt spasrntqgs lsstqattte mqsgrltsta vtrgkgttep
    12841 gdtasptrsp lptattaaat sidttprsqs eiptinqass tmaepntkas lslsatsltt
    12901 fsttrrvgte aktdtvptmp aqegsspaps agteatspaf pttrsqatat gvgtasasaa
    12961 svspspssaa tshsssspag ssaatpnpqr sstggttess sattshpsta nvsstanvsp
    13021 alsshpgtss agsgavtaea stqttapsts spkpsastsg tspasdntqg rpfptlastm
    13081 gtqavrltst tvtqqqvtte pgaassstrs pfpsvatasa tsltvhppsq sqittvnqgs
    13141 gttaepytkt slspsataqt slsttrlegt raktetvpmt ptqkrssptv ptgtqaaspt
    13201 fpttrphaaa tstgtasasa asvspspssa atshsssspa gpsaatpnpq rstasgttes
    13261 ssatpaqpst afvsstpsst pglsgigtgg tteqaatqsa apslstseps atasgtppas
    13321 rntqgslsst qatttemqsg rltstavtrg kgttepgdta sptrsplpta ttaaatsidt
    13381 tprsqseipt inqasstmae pntkaslsls atslttfstt rrvgteakte nvpitliqeg
    13441 nsptvstrte tmsptfptts pnaidtfltt nqgsrmtsep rtltspshlt tslmilsstt
    13501 swkstslnvp ltsicceyfr a
//
LOCUS       XP_009559169            1412 aa            linear   VRT 09-MAR-2023
DEFINITION  uromodulin-like 1 [Cuculus canorus].
ACCESSION   XP_009559169
VERSION     XP_009559169.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560874.2
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009559169.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1412
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1412
                     /product="uromodulin-like 1"
                     /calculated_mol_wt=154231
     Region          112..158
                     /region_name="WAP"
                     /note="whey acidic protein-type four-disulfide core
                     domains. Members of the family include whey acidic
                     protein, elafin (elastase-specific inhibitor),
                     caltrin-like protein (a calcium transport inhibitor) and
                     other extracellular proteinase inhibitors. A group of...;
                     cd00199"
                     /db_xref="CDD:238120"
     Site            118..124
                     /site_type="inhibition"
                     /note="inhibitory loop"
                     /db_xref="CDD:238120"
     Region          261..>288
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain; smart00179"
                     /db_xref="CDD:214542"
     Region          546..589
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain; smart00179"
                     /db_xref="CDD:214542"
     Region          <696..>831
                     /region_name="PRK10856"
                     /note="cytoskeleton protein RodZ"
                     /db_xref="CDD:236776"
     Region          841..>908
                     /region_name="SEA"
                     /note="SEA domain; cl02507"
                     /db_xref="CDD:470595"
     Region          944..989
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain; smart00179"
                     /db_xref="CDD:214542"
     Site            order(944,947,963)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238011"
     Region          1086..1325
                     /region_name="Zona_pellucida"
                     /note="Zona pellucida-like domain; pfam00100"
                     /db_xref="CDD:459673"
     CDS             1..1412
                     /gene="UMODL1"
                     /coded_by="XM_009560874.2:1..4239"
                     /db_xref="GeneID:104059234"
ORIGIN      
        1 maritlisvv vlwatpqlgr gneitekgls llgyhlcnys ltqnvpkmva yrksyeksts
       61 cggwipwmmc prtyyktqyh tvevpetitl tdccegyeqv glycslalnr ssvlasrpgi
      121 cpmestetsd ypctfdaecp glkrccnssk gagcvdpvpe gstfwynatv lvkmdfneli
      181 rvdshllnhs rllhsmitga lqplnatvhh iqsnraevya gtvasqvlig lhqpalladv
      241 ssslkdivkr vyevidtevq dvnecsyaef nacpekntci nlegyyscnp qhehahvnph
      301 qlstrkegit astpslaldl inasssalsi snaslltmtn qstggecyps avrdhrifsv
      361 tsnsfemswh vtpalnhtfq vqvfkgkevi qmlkteemkm dvsgleagvm ysaeisfetc
      421 gktiisrqnv kteakifiit mrilnynftd dfrnvsssay edfsrllfte leksfppnis
      481 alyksgglkv qtdslqagsi ivrlritvqd pefpvdvstf apvisylhsg svllvdqqnt
      541 avedwdecas daendcsvfa ecinlmgfym crckttmdtn psrpgrnceg eivdpltett
      601 spelakstmf apeevspagp dflattktva tkgsemsttv hlpaavplgd kkasqghspt
      661 nappapwkkd laprmdfgrd ksptaigvta skelavgaew wvavspsqqn smaetsagas
      721 qqvaaltnap isttgqdhln asllvlsnqt asattrshta lgvsqpnses gpstalpatg
      781 dagiptlnat lrahaemere nnsraekyar algspalpst spapsstpgt tvdhtvqkli
      841 gtvritnvky spgfsntsse eyqtfqqlfv devhkslpld vleqmdagli kvlitgitng
      901 stvvnfnlli tedvdiyyii ttfrdafehs syftvdkssl siddydeckn eeddcsldas
      961 chntlgfyqc scnegfadvh perpgrscea fpitqeatla deklvhdtis pattlqtsnh
     1021 vsspapldss taehkvledt mfstevlppl amnpvstpdv spqaspfplv kpaqevsikd
     1081 avrvfceiek ivltiektfl qqqsipetsl ylgkphcnvs vsngthvvlq agwsdcgtel
     1141 etnmtntvvk tilrndvsaq giihhlkvas pihcvfqndl ltssgytaeg lytifedlhg
     1201 sghfrtemql fignspipkn fsvsasdeil ievgiqrads klkvvltdcw atptnnsvdp
     1261 lsftfisnsc pipdtyttll engnsskaqf kmkifsfvnn svvylhckir icmetpgstc
     1321 rtrchaarsl ktgetiathr tswgplcksa apdlkrekea gmgvgyiili afavlgfvlg
     1381 vvsfliflyq rkmgrynfri ksdnfsyqvf yd
//
LOCUS       XP_053916799             346 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: protein FAM3B [Cuculus canorus].
ACCESSION   XP_053916799
VERSION     XP_053916799.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060824.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 16% of CDS bases
            frameshifts          :: corrected 3 indels
            internal stop codons :: corrected 2 genomic stop codons
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..346
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..346
                     /product="LOW QUALITY PROTEIN: protein FAM3B"
                     /calculated_mol_wt=37933
     Region          130..344
                     /region_name="PANDER_like"
                     /note="Domains similar to the Pancreatic-derived factor;
                     cl19122"
                     /db_xref="CDD:473142"
     CDS             1..346
                     /gene="FAM3B"
                     /coded_by="XM_054060824.1:1..1041"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon;
                     deleted 2 bases in 2 codons; substituted 2 bases at 2
                     genomic stop codons"
                     /db_xref="GeneID:104059267"
ORIGIN      
        1 mllatsassi sfisacklil tvadiqpita asgcesllrn lvlaesiree lqdtpwdvfs
       61 tsykcfgiag gkdlanpaps vfvklaglll tslaawhmgx aflpketiks svdnlqdigk
      121 kpllrapftk rqkcdhwspc ppgdyayxil sgggkaklak icfmdsrlms eekgnvrrgt
      181 niaivnfktg kvssaryfnm ewngdhsgem ttfinnapeg sllsmvtqdd gstqlkngak
      241 nxweswevrn mkfrpswafi aakgfklpdn iqkekvrlif fslciclyir cnllvqispv
      301 vficmterqt eiqktqyreh sdkknnkygg gpaevqiegc iprnli
//
LOCUS       XP_053916866             148 aa            linear   VRT 09-MAR-2023
DEFINITION  protein ripply3 [Cuculus canorus].
ACCESSION   XP_053916866
VERSION     XP_053916866.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060891.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 8% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..148
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..148
                     /product="protein ripply3"
                     /calculated_mol_wt=17073
     Region          60..135
                     /region_name="Ripply"
                     /note="Transcription Regulator; pfam14998"
                     /db_xref="CDD:464433"
     CDS             1..148
                     /gene="RIPPLY3"
                     /coded_by="XM_054060891.1:1..447"
                     /db_xref="GeneID:104059255"
ORIGIN      
        1 mrrqtrssgg aglrgcrarg paerqqqkvk eqrerwrrrt vrriraaers pqrahsspal
       61 wrpwmltarn semtenqqms qldgqpinfr skgalgfqhp vrlylpksks qkflnnigek
      121 vlasfpvqat ihfynddgds eedeeein
//
LOCUS       XP_053916988             956 aa            linear   VRT 09-MAR-2023
DEFINITION  chloride intracellular channel protein 6 [Cuculus canorus].
ACCESSION   XP_053916988
VERSION     XP_053916988.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061013.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 3% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..956
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..956
                     /product="chloride intracellular channel protein 6"
                     /calculated_mol_wt=98682
     Region          <66..234
                     /region_name="LGT"
                     /note="Prolipoprotein diacylglyceryl transferase; cl00478"
                     /db_xref="CDD:469786"
     Region          <175..565
                     /region_name="PRK07764"
                     /note="DNA polymerase III subunits gamma and tau;
                     Validated"
                     /db_xref="CDD:236090"
     Region          492..>698
                     /region_name="PRK12678"
                     /note="transcription termination factor Rho; Provisional"
                     /db_xref="CDD:237171"
     Region          723..956
                     /region_name="O-ClC"
                     /note="intracellular chloride channel protein; TIGR00862"
                     /db_xref="CDD:129941"
     CDS             1..956
                     /gene="CLIC6"
                     /coded_by="XM_054061013.1:1..2871"
                     /db_xref="GeneID:104064744"
ORIGIN      
        1 mgpeaksssg gkkqgqkwgs edfgvgvtqt apppsrapar rrpvppserg aapspagaap
       61 llplgrarra pgqvrtaesp gqpgapqpeg sgvpmeggde aaagdprprv spdgsptgea
      121 pqlmngeaam apgdrggsgf pegaaetsga errdpggspp ggeglpggep vaagrgateg
      181 sapaganlgk aagapagtea aagrkepeea apggkepeea apggkepeea aprgkdseea
      241 apeweepeea aqggkepeev apgdtepeev tperkepeea aqggkdseea mvtapsgpdp
      301 eeavreeaps gtgtedtvre aisegtdpek aaatapegtv redvvreavp egrhpeeaaa
      361 tvpeetnpqe aaatapegtv pedavreaip egtdpeeaaa tapegtnped avreaapegt
      421 dpeeaettap agtdpeeavr eaapegtvpe davreaapeg tvpeeavrea apegtvpeea
      481 ettapagtdp eeavreaape gtvpeeaett apagtdpeea vreaapegtv peeaettapa
      541 gtdpeeavre aapegtvpee aaatapegtv pedavreaip egtdpeeaaa tapegtnped
      601 avqeaalegt dleeataptg sgvasescge vevalpaege vdgevlspgs pdvengvetp
      661 gteqeisapg agegnesrdp qggewdtadr slngvrgrae edemglpaal edeedeekqe
      721 hdislfvkag sdgesigncp fsqrlfmilw lkgvifnvtt vdlkrkpadl qnlapgtnpp
      781 fmtfdgevkt dvnkieefle eklapprypk lapnhpesns agndvfakfs afiknprkda
      841 nenleksllk alrkldnyln splpdeiday steeitvssr kfldgdeltl adcnllpklh
      901 iikvvakkyr nfdfppemtg isrylnnaya rdeftntcpa dqeieyayld vakrmk
//
LOCUS       XP_053917120             258 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: uncharacterized protein C21orf140 homolog
            [Cuculus canorus].
ACCESSION   XP_053917120
VERSION     XP_053917120.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061145.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 3% of CDS bases
            frameshifts          :: corrected 2 indels
            internal stop codons :: corrected 2 genomic stop codons
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..258
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..258
                     /product="LOW QUALITY PROTEIN: uncharacterized protein
                     C21orf140 homolog"
                     /calculated_mol_wt=28830
     CDS             1..258
                     /gene="C1H21orf140"
                     /coded_by="XM_054061145.1:1..777"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 2 bases in 1 codon; substituted 2 bases at 2
                     genomic stop codons"
                     /db_xref="GeneID:104064785"
ORIGIN      
        1 mgleipthtg ftnllfkyii crgcfdaasg rqcqqykraf ttlqlnsfnt vflretnipe
       61 siitgekvae easlcwpvga lahagscqvx vpwmyklllr ddlpthqxns ivqelcdslt
      121 mangkgvivt rdktqcveak dhnvqeigtl lpippaiyms steycsevar anshellvvp
      181 ssynylylmd isrsslkcfn innrkhfvlr svekthsyrc ilfrdlivkg iekitpnkck
      241 vxigrvkrwe nyylgths
//
LOCUS       XP_053917377             944 aa            linear   VRT 09-MAR-2023
DEFINITION  neural cell adhesion molecule 2 [Cuculus canorus].
ACCESSION   XP_053917377
VERSION     XP_053917377.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061402.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 6% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..944
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..944
                     /product="neural cell adhesion molecule 2"
                     /calculated_mol_wt=104272
     Region          128..220
                     /region_name="IgI_1_NCAM-2"
                     /note="First immunoglobulin (Ig)-like domain of neural
                     cell adhesion molecule NCAM-2; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05866"
                     /db_xref="CDD:409452"
     Region          128..133
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409452"
     Region          136..140
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409452"
     Region          142..152
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409452"
     Site            order(143,145..146)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:409452"
     Region          156..162
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409452"
     Region          165..167
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409452"
     Region          173..179
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409452"
     Region          181..189
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409452"
     Region          196..203
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409452"
     Region          208..219
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409452"
     Region          234..303
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          239..243
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409562"
     Region          252..256
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409562"
     Region          277..280
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409562"
     Region          290..295
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409562"
     Region          316..405
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          335..339
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409562"
     Region          348..352
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409562"
     Region          371..375
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409562"
     Region          385..390
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409562"
     Region          398..401
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409562"
     Region          407..504
                     /region_name="IgI_NCAM-2"
                     /note="Immunoglobulin (Ig)-like I-set domain of Neural
                     Cell Adhesion Molecule 2 (NCAM-2); cd05870"
                     /db_xref="CDD:143278"
     Region          407..412
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:143278"
     Region          416..420
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:143278"
     Region          424..432
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:143278"
     Region          438..444
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:143278"
     Region          447..450
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:143278"
     Region          460..466
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:143278"
     Region          469..475
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:143278"
     Region          483..491
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:143278"
     Region          494..504
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:143278"
     Region          508..586
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     Region          603..695
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(603,668,683)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(684..685,687..688)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          701..785
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(701,765,780)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(781..782,784..785)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..944
                     /gene="NCAM2"
                     /coded_by="XM_054061402.1:1..2835"
                     /db_xref="GeneID:104065425"
ORIGIN      
        1 mlpaaiggar aaparyvrph phprwacpgd lrlspprrgr rgeeqaprgp evrprrdpsg
       61 pacarpprgg rclpdivrrg ealagtgraa apgehlqlgt vhrrqllnms llplyllgll
      121 lssgqallqv sislskvels vgeskfftct aigepdnidw ynpqgekivs sqrvvvqkes
      181 nrsrltiyna diedagiyrc qatdakgqtq eatvvleiyq kltfqdvisp qefrqgedae
      241 vvcrvtsspa pivswlyrne evtaiadnrf avlannnlqv lnisksdega yrcegrvear
      301 geidfrdiiv ivnvppaiil lqksfnatad rgeaislfcr atgspppeis wyrngkliee
      361 nekymlrgsn telivrdikn idagpyicna knkagndkkq tflqvfvqpq iiqlknettf
      421 engkatlvce aegepipeit wkraidgvtf segdkspdgr ievkgqhgks slhikdvkls
      481 dsgrydceaa srigghqksm yldieyaptf msnqtmyysw egnpinisce vlanpaaivq
      541 wrrgrlvlpv kntthlktys tgrklileia ptsdsdfgry nctatnrigt ryqeytlgqa
      601 dvpsnpygvr vlelsqttak vsfnkpdshg gvpihhyqvd vkevasetwk ivrshgvqtm
      661 vvlsnlepnt tyeikvaavn gkgqgeyski eifqtlpvre psppsihgqp gsgksfklsi
      721 tkqddggapi leyivkyrsk dkedqwlekk vqgsrdhiil ehlqwtmgye vqitaanrlg
      781 yseptlyefs mppkpniitd tlfnglglga viglgvaall lilvvtdvsc fflrqcgllm
      841 citrricgkk sgssgkskel eegkaaylkd gskepivemr tederitshe dgspvnepne
      901 ttpltepekl plkeengkea lspetieikv andiiqsked dska
//
LOCUS       XP_053917492            1081 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: enteropeptidase [Cuculus canorus].
ACCESSION   XP_053917492
VERSION     XP_053917492.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061517.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 5% of CDS bases
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1081
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1081
                     /product="LOW QUALITY PROTEIN: enteropeptidase"
                     /calculated_mol_wt=119950
     Region          58..165
                     /region_name="SEA"
                     /note="SEA domain; pfam01390"
                     /db_xref="CDD:460188"
     Region          216..241
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(227,230,234,240..241)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            237..241
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          250..358
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cd00041"
                     /db_xref="CDD:238001"
     Site            order(260,262,264,291,296,329,353,355,357..358)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     Region          372..527
                     /region_name="MAM"
                     /note="MAM domain, meprin/A5/mu; pfam00629"
                     /db_xref="CDD:459878"
     Region          550..657
                     /region_name="CUB"
                     /note="CUB domain; pfam00431"
                     /db_xref="CDD:395345"
     Site            order(560,562,564,591,596,630,654,656,658..659)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     Region          666..700
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(671,679,690..691)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(683,686,690,696..697)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            693..697
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          701..>762
                     /region_name="SR"
                     /note="Scavenger receptor Cys-rich; smart00202"
                     /db_xref="CDD:214555"
     Region          808..1040
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cd00190"
                     /db_xref="CDD:238113"
     Site            808
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(848,899,994)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(988,1013,1015)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..1081
                     /gene="TMPRSS15"
                     /coded_by="XM_054061517.1:1..3246"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /db_xref="GeneID:104068808"
ORIGIN      
        1 mkqkkssdkn yvplsyyeis fasllavfvc vcvglivlsw lsiqelkqve vdvkthgymg
       61 tfiilsgvsf tpsllnrssa dfkvlafdve qliqevfhas dlktdferce isrfkksens
      121 yerfkksetg vivifslyft hmitaekvkd elvwgikank nsltqtlkid vdsiqvtvaa
      181 enlttmmplt ssgpgqltts kssitagecl ppaelcddgi tcirkdlfcd gfldcpdgsd
      241 esekicasvc dgkfmltdsf gffhsmnypk pynanivcqw iilvpqglsi klnftsfdtq
      301 kyadylnife gigqkktlrd slsgsnpeti yifsheatvq fisdysenhn gfnatyttln
      361 aselnnyekv nctfedgfcc wiqdldddse wkrvqgpafp flsgpdfdht fgnesgfyis
      421 tftglrfgqe kvrilslplv ssdpsclsfw yftystnayr lrvsisnvyg lekivfekeg
      481 nygnnwnygq vtlnetsnfk vifdafkrrg ssdialddig ltkgecnesi yidptaippv
      541 tttppvptdc ggpvelwepn stfssenfpd fypnrafcvw ylnaekgkni qlhfqvfdle
      601 nindvveird grgsnsllla vytgqdplpd vfsttnemtv ilitnksitk kgflanfttg
      661 yhlgacaide hqcgsgecip lhnfcdslpq cedgsdeakc vrllngspst eglvearigk
      721 twhlacaddw deeisdsvcq llgltdanms stilftgdgp fvnitkaanh sliftkrehc
      781 sknlvvhlqc niepcgkqlv tqtngariag gndarrmawp wiislhfnsk plcgaslish
      841 ewlvtaahcv ygrqlkpsqw kavlglydqs dttepsivvq iidqiiinph ymkttkdsei
      901 almhlqnkvq ytdyiqpicl peknqqflpg ihcsiagwgg itngdcssni lqeaevplis
      961 nekcqqwmpe ysitenmica gyemggvdsc kgdsggplty edgnkwvlvg vtsfgspcal
     1021 pkrpgvyvrv smfvdwikni iyxldtfqcs svatngpcpg ntscfsgsln kiweapeeip
     1081 a
//
LOCUS       XP_053917613             172 aa            linear   VRT 09-MAR-2023
DEFINITION  putative uncharacterized protein ENSP00000383407 [Cuculus canorus].
ACCESSION   XP_053917613
VERSION     XP_053917613.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061638.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 13% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..172
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..172
                     /product="putative uncharacterized protein
                     ENSP00000383407"
                     /calculated_mol_wt=19432
     CDS             1..172
                     /gene="LOC128851640"
                     /coded_by="XM_054061638.1:178..696"
                     /db_xref="GeneID:128851640"
ORIGIN      
        1 mnlfcfsleg smdslyepvp erqepkdttt ansrasspvg mhvncglpdr smslefpdfe
       61 ntvtkkrksi qksmseneaf drknvngtlw qgsrkqesds yirrhcqlee gnmigdgihl
      121 lqgkkteett yqvinyeqwi pprvhnpava gsgemegklv qeksvevrly cn
//
LOCUS       XP_053918075             439 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: protein maelstrom homolog [Cuculus canorus].
ACCESSION   XP_053918075
VERSION     XP_053918075.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062100.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 6% of CDS bases
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..439
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..439
                     /product="LOW QUALITY PROTEIN: protein maelstrom homolog"
                     /calculated_mol_wt=50051
     Region          5..63
                     /region_name="HMG-box_SF"
                     /note="high mobility group (HMG)-box domain superfamily;
                     cl00082"
                     /db_xref="CDD:469606"
     Region          128..324
                     /region_name="Maelstrom"
                     /note="piRNA pathway germ-plasm component; pfam13017"
                     /db_xref="CDD:404040"
     CDS             1..439
                     /gene="MAEL"
                     /coded_by="XM_054062100.1:47..1366"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 1 base in 1 codon"
                     /db_xref="GeneID:104056020"
ORIGIN      
        1 msprkglqsp ycifvreqlp elrrrglpva svvdaipycs qawallpeee kmayaekark
       61 wkekkrsqet aketcnlahp vpacltaeip sdtsfpdasa mswendqavi adifyflniy
      121 shgklppvce qrflpceigc vkyslqdgim adfhhfidpe vpprgfwyhc qsagytthki
      181 plsgfhlprt cyavvlrell efvqpardvr prfycrsndr frimwclkrm ssltgieshl
      241 ellavedlvt elyqkkyqke lsktlvwrel daflwdfssn trckwheend ivycalasck
      301 kmaycisksl asvygvplta ahlplqdsdy dgnvytrmvv ldtghlqkmk pegsgcdrrf
      361 tspsqdeelv csncdsprgv rtslmxtstm qgrgiiqlll ksgsalsesf iqafvrmikl
      421 ltgfkddknl vyylqedlf
//
LOCUS       XP_009555473             258 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: T-cell surface glycoprotein CD3 zeta chain
            [Cuculus canorus].
ACCESSION   XP_009555473
VERSION     XP_009555473.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557178.2
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555473.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 7% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..258
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..258
                     /product="LOW QUALITY PROTEIN: T-cell surface glycoprotein
                     CD3 zeta chain"
                     /calculated_mol_wt=28756
     Region          120..149
                     /region_name="TCR_zetazeta"
                     /note="T-cell surface glycoprotein CD3 zeta chain;
                     pfam11628"
                     /db_xref="CDD:463313"
     Region          233..252
                     /region_name="ITAM"
                     /note="Immunoreceptor tyrosine-based activation motif;
                     pfam02189"
                     /db_xref="CDD:426646"
     CDS             1..258
                     /gene="CD247"
                     /coded_by="XM_009557178.2:1..777"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon"
                     /db_xref="GeneID:104055977"
ORIGIN      
        1 mwcahikrhl rfmnggeegn dtkgnpkhqy qeckpqpake gacfgaaasr wtpkaligge
       61 lpveladeqs pwrclfsapv dslpitaras kmkwrrivif ailqaqlpva davpilgltd
      121 prlcylldgf lfiyaivita lfvkaklsqt selqlqpgqd dlynklsrgq rdeydvlgak
      181 rgadpelggr hqqrrrnpqd tvytslqkdk mgeayseigm kgeqqrrrgk gnegvyqgls
      241 tatkdtydal qmqplppr
//
LOCUS       XP_009553542             358 aa            linear   VRT 09-MAR-2023
DEFINITION  putative protein FAM172B [Cuculus canorus].
ACCESSION   XP_009553542
VERSION     XP_009553542.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009555247.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009553542.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..358
                     /product="putative protein FAM172B"
                     /calculated_mol_wt=41125
     CDS             1..358
                     /gene="LOC104054273"
                     /coded_by="XM_009555247.2:1..1077"
                     /db_xref="GeneID:104054273"
ORIGIN      
        1 madftgdhtw lqiqqelslr kliegseyqe elkydfnikg elrhldtnes fvfnyyknah
       61 eqnhkryqvl ghlitqyvyg llervctlqk vyiptdated eprsfffmse naltssfsli
      121 vllqdrgvfr agqwgqrtiv reglghgtqi pfiktalqsh rgvivlnpnd nfvdpkteke
      181 rlsfstreea lnstqsiwwi pkrgsstpee htiyvwdhfi sksaaknvaf iahgygglvf
      241 vdllvqrkwe vmnkvysvaf idsthnmqhq trsdpqiqew ilkhccewvs ncktpnkafg
      301 scmkvncptv sarvdkydla pscclraifk ylnstlkakt srhspvatrs stskrgnk
//
LOCUS       XP_053918529             924 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: adhesion G-protein coupled receptor G7
            [Cuculus canorus].
ACCESSION   XP_053918529
VERSION     XP_053918529.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062554.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 22% of CDS bases
            frameshifts          :: corrected 4 indels
            internal stop codons :: corrected 4 genomic stop codons
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..924
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..924
                     /product="LOW QUALITY PROTEIN: adhesion G-protein coupled
                     receptor G7"
                     /calculated_mol_wt=101753
     Region          345..381
                     /region_name="GPS"
                     /note="GPCR proteolysis site, GPS, motif; pfam01825"
                     /db_xref="CDD:460350"
     Region          391..688
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          394..418
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          428..447
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          491..513
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          529..545
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          578..600
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          626..648
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          655..680
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..924
                     /gene="ADGRG7"
                     /coded_by="XM_054062554.1:1..2775"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 3 bases in 3 codons;
                     deleted 2 bases in 1 codon; substituted 4 bases at 4
                     genomic stop codons"
                     /db_xref="GeneID:104055829"
ORIGIN      
        1 msslqwdril vgitcvvtmt lwalciwqlv lrfetdttep mvppclclsg gicqdgacvc
       61 peewvgslce ivnfceassy tvniserixk tltfgwirvg kygnseqkce pdtvngntsi
      121 airlcsregr tptldppxil ncnenmdspa sqvetadssn vsaiasntqi ltstpdqlat
      181 qnisaavnit aqilkkpnvs edyqasvalm atasqlmaan etefnhdnlv nvtssnaalm
      241 eefsltgnis qpnvaiqsap lktsssttlf saqrdtalgx yqsaklgiqe nvpglngdls
      301 tevqigqlsv yvvcwcisvy vsvtifsapn pxyntselql rdhacvfwdy avndwstagc
      361 akgrdqflic rcnhttnfgv lmsfqikykh akpleyvsyi gvglsmaglv itilfqiftr
      421 ktxktsvtwm lvslcfxifn iifisgiesq naknhssdtt syyqqhfpyd iashtlltsd
      481 gvgppadsxc tavavllhyf llatfmwtal nsawllramk llpgrflitt svtgwgipaa
      541 vvattlgaty regkalnyqq eeffwlaald qnqnfgvqkp mlwsfllpaa liilfninfi
      601 kitvsviwkk nenltrnkkn sfrkkmigti sivvvlgvtw tigyrmlkgh ekasfvfssl
      661 fcifnatqgl qvcilytfrs qifkkrvsea favfwvlkvs lylhsktyyv sksqparhsq
      721 etfgspqifs enislstfps ytfareperl ypklwllaer rlneshprqg sagartagag
      781 tegsarrlqp qrgghapygk prlspekprp nshhpethap wgkprphqst hgraaaeggk
      841 gvwrgrgrsg vraevsarls ggferacarl aqarqtqlsl papfffflfp lprprwwwrr
      901 wrrrllclrs gsdwatgesp pvgp
//
LOCUS       XP_053918761             261 aa            linear   VRT 09-MAR-2023
DEFINITION  NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4
            [Cuculus canorus].
ACCESSION   XP_053918761
VERSION     XP_053918761.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062786.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 6% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..261
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..261
                     /product="NADH dehydrogenase [ubiquinone] 1 beta
                     subcomplex subunit 4"
                     /calculated_mol_wt=27756
     Region          139..260
                     /region_name="NDUF_B4"
                     /note="NADH-ubiquinone oxidoreductase B15 subunit
                     (NDUFB4); pfam07225"
                     /db_xref="CDD:429355"
     CDS             1..261
                     /gene="NDUFB4"
                     /coded_by="XM_054062786.1:1..786"
                     /db_xref="GeneID:104055864"
ORIGIN      
        1 mteascedaw kkgagsvrgp csalpsaaag galsrcgags vqcrlcavpv rnpsrpqgga
       61 lflwapcglc aasvrrpcps lpaaaaggal srrgagsvrc rcgpsrprga lvpgtgralg
      121 glcamaaesq ppgsaaeryr pnrfvslpae ldpntyessa ekrraeaerl airarlkrqf
      181 qlqlhnprpp aviedpallr wayartqnvy ptfrptpkts flgavfaigp llfwgavfkl
      241 drdrkeklik egkyerpfsv f
//
LOCUS       XP_053918864             818 aa            linear   VRT 09-MAR-2023
DEFINITION  spindle and centriole-associated protein 1 [Cuculus canorus].
ACCESSION   XP_053918864
VERSION     XP_053918864.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062889.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..818
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..818
                     /product="spindle and centriole-associated protein 1"
                     /calculated_mol_wt=91711
     Region          27..429
                     /region_name="SPICE"
                     /note="Centriole duplication and mitotic chromosome
                     congression; pfam15678"
                     /db_xref="CDD:464796"
     CDS             1..818
                     /gene="SPICE1"
                     /coded_by="XM_054062889.1:1..2457"
                     /db_xref="GeneID:104055872"
ORIGIN      
        1 msalrgrgvg rkghrkavvr rdwdstvhdl tvhratpedi lrrheihksk nkalvhlelq
       61 ekalkrkwkk qkqlaadsle krklalmcei lsdqyqlqdv lersdqvmav akdllgnapr
      121 trtgfpnvtm apncdlessq gpivqkfdps tqlsilsesv mdsqalneve eealpdcqse
      181 ngqhntpnfk ssissdrllr flreenshvn sqlwadkdmr kttlsqetnv pltpatvsps
      241 ldqsalnatn vvkrihsrlq nddneetvda tdtvrqvlnp nsrkqkqiav tvkrkqavqn
      301 sarqrrggsp gnsipidlqr dnrsgldiln rmihdvehel eeyerctgre vqktersegl
      361 tgftlslvns lcrlmrylre semqlrekev mrqhheqmln ehrelidalt aeilllrees
      421 taiqnklqqy mtvtdeqlis ltqafrglpl veptreqspn hfgiassgav dgqekhdlny
      481 seprtdagnr enrlkfpqee lpfkfslrpg aldgvgsgrs lpahiyqpav llspprqmns
      541 qelsphqhmf tatsnspent erepckerss psslrtqstt eenhfisqrq pvspsdkdle
      601 sshmkislsc pgdtrknsra eelfqsgdll gqiaeltrqn alikaqlskf kgfsedtsdc
      661 lhqpdsiqna spapdssqgq thlvisksle eriaelnrqs teardkllql idqqklaaad
      721 lvpprtspvv ppslnytena rrtievsipm avamdgsked svsstsmtsi rrsvgdssks
      781 ssplsdtses vklvpicqrs kvekqkeggw falsthit
//
LOCUS       XP_053918958             269 aa            linear   VRT 09-MAR-2023
DEFINITION  trypsin I-P1-like [Cuculus canorus].
ACCESSION   XP_053918958
VERSION     XP_053918958.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062983.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 10% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..269
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..269
                     /product="trypsin I-P1-like"
                     /calculated_mol_wt=29210
     Region          25..244
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cd00190"
                     /db_xref="CDD:238113"
     Site            25
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(64,108,202)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(196,217,219)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..269
                     /gene="LOC128851753"
                     /coded_by="XM_054062983.1:219..1028"
                     /db_xref="GeneID:128851753"
ORIGIN      
        1 mkfflfvtfv gvavafpind dddkivggyt caansvpyqv slnsgyhfcg gslinsqwvl
       61 saahcykyrf rvqlgkhnla ltesteqlis vakvirypgy raatldndim liklaqpaql
      121 travqtvslp tscvdagttc lisgwgntls dghlypdtlq cleapvlsss ecsnayypme
      181 itnnmicvgf leggkdscqn dsggpvvcng qlqgivswgi gcakkgypgv ytkvcnfvsw
      241 ieenhgfqlk hscstsptfs phhfllfwd
//
LOCUS       XP_053919381            1953 aa            linear   VRT 09-MAR-2023
DEFINITION  rho guanine nucleotide exchange factor 5 [Cuculus canorus].
ACCESSION   XP_053919381
VERSION     XP_053919381.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063406.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1953
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1953
                     /product="rho guanine nucleotide exchange factor 5"
                     /calculated_mol_wt=215896
     Region          1538..1714
                     /region_name="RhoGEF"
                     /note="RhoGEF domain; pfam00621"
                     /db_xref="CDD:459876"
     Region          1736..1861
                     /region_name="PH_ephexin"
                     /note="Ephexin Pleckstrin homology (PH) domain; cd01221"
                     /db_xref="CDD:269929"
     Region          1871..1925
                     /region_name="SH3_ARHGEF5_19"
                     /note="Src homology 3 domain of the Rho guanine nucleotide
                     exchange factors ARHGEF5 and ARHGEF19; cd11940"
                     /db_xref="CDD:212873"
     Site            order(1876,1878,1881,1885,1903..1904,1919,1921..1922)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212873"
     CDS             1..1953
                     /gene="ARHGEF5"
                     /coded_by="XM_054063406.1:1..5862"
                     /db_xref="GeneID:104066634"
ORIGIN      
        1 mkvliesess skyscpgsga laplspwwqr nqalstfapk pgwggdaiia pvainktnkq
       61 tgtrrwvgad pgphwvgadp rsrrrvgadp gpweripnsa lggsgsrtrh lvgadpgpwe
      121 ripnpalarw eripalgvgh avpgrrplpp cpapaagrvp hpirasrlps crcarltwsr
      181 aarrttcgda aagaggsaar rgrgsaaqqd vplmeseett eggttplggt stpgeawdsa
      241 tvkreyhapq tsakmsisps dsamgaefss pedcfsaske aaemlgrpsn tvqevpagle
      301 qeqgdeeplr gllewegvml ledggldhsl klkqvelvdl esnqdsssls pvqdgpahsn
      361 silqaidlst efpqcqaela fhgsnpqsqh pkylladats sqretpkcfl vcktiseghy
      421 maepfldkis vdslpevdag aeqrqssrkv apatdeqpts eeavedvnkp hasedakesi
      481 ralqgleent essslhhlsf tltddsqrss lqaegnissg etknsntvkd qetvmvpken
      541 sstskclhle ddhrktegrp aspaqsafqv kdttkrteev ntshkelaee vavselqqek
      601 ekkeskeqnl pegkslepkd qknkeeneqk qlqreelmle eefklealss afkseissvp
      661 rhnvdpccle nvflaeqtes afpleepvsv gqlpgedvwl ksyvtetcsg cqppavstls
      721 snslnpvart pavlphthqa edledsvrfs iggqdvgead wddgtrlgke dehsdghgka
      781 vqwfdkrdap lhggvaapss teypetyvpa hpscgtenle ppdpidphvv tenlgraelq
      841 dfipalhtel tsvasksspq qeeasrtafv tpkdcpgtsl nqlldsiekp anqaasvqvq
      901 dpasgeaail rsepeeants herltseegf hedfsgpssf sviytsglpl egslpedrrt
      961 vagsleppqt pgrtstplnh petiqkknpe tsvviqgket eakaqqvpll dqsdyslnqd
     1021 epgsriasvl stltwpcegd vdlavnqqep lsplshsslp lvsepdakql phppahvqtp
     1081 rqaqvpalna nhlaqppala syqpmaplph srphlncgvd nnkllavhpp ishpfrtaas
     1141 vpdsntvasa shgedvaekd dlvsvarvrd lsdsgthdte tsddsvvsll aksfsavgne
     1201 altsccdtsp ettdqhldiq ggksspdhps wpsleglits tdsksrvsaq plpilaftnp
     1261 ihflqlspps ppttrtsche evfsgemqwe qqggifgvdt kniqapvait ekiegerrvk
     1321 qrlegkgreh llvaqakeem prhsplekss swpdkkpirv vaqepaanqe npikrrvksk
     1381 dwhrqglkrt svppdilqei psvpsdeeah kthreppvss etvilrekkp adatenfrrr
     1441 hsklinssrl lyqeysdvvl nkaiqsqkrv dsfsedless fpssprlrrk vlspqdsylq
     1501 rlsvssnasl wqdipmvrgs rmllnmsrde qklqeakfel imseasylrs lnvavdhfqr
     1561 stelqamltn qerqwlfsrl hdvrdvsasf lfdleekfee dmftfhvcdv alkhapefrr
     1621 vylpyvtnqt yqeqtfqrll ngnagfqqvl erlesdpvcq rlslksflil pfqritrlkl
     1681 llqnilkrtr pgseeevqat qaydalekli kdcnenvqrm ksteeliyls qkiefeckif
     1741 plisqsrrlv kcgeltaldf ntlspkwkvt trpiylhlfn dclllsrpke ggrfvvfdha
     1801 afsdvrgekc emklhgtnkn vfrlfllqny qgkrveflfr tethseklrw isalapprge
     1861 ldllecpdap qvqciktyka rendelalek adiimvmqys ndgwiegvkl sdrergwfps
     1921 ehvelisskh arqknlkeeq rvknakqqvf ckk
//
LOCUS       XP_053919502             693 aa            linear   VRT 09-MAR-2023
DEFINITION  homeobox protein NOBOX [Cuculus canorus].
ACCESSION   XP_053919502
VERSION     XP_053919502.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063527.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 5% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..693
                     /product="homeobox protein NOBOX"
                     /calculated_mol_wt=75152
     Region          236..292
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     CDS             1..693
                     /gene="NOBOX"
                     /coded_by="XM_054063527.1:1..2082"
                     /db_xref="GeneID:128851813"
ORIGIN      
        1 mwwevvvffi fflveckdkd tllntehfvv nadavrgngt esnvlaafqs tatkeevedt
       61 frtedrissv kkveeggrcc tlkatgspsq vsvaldgqld lgsvcgqlsn ffsdekavsp
      121 lslvefaqep tvqsgpdeqy esyysdgfek eakkknrndg sgiyaekass gipgdtcrqd
      181 mcgpatcqsf kytsanaaaq qsykmssvle sgiihggtkg kkellgnpei llpvrkksrt
      241 fysaeqleel ekmfqedhyp dnekrkeiaa vvgvtpqrim vwfqnrrakw rkseklsvkg
      301 nkkyptssvl sdpigsdgyg atvpsmppll diardrstml svdttagnys sllsghpapl
      361 assssvssva gtvgsceavq tkvlpqlnfs skrtecfpdl pspppirras lslslsfsph
      421 shmvplmldt pnskcslsgh engsgeafty siqnqglrsp vscnypeqle sagnldttyc
      481 qyssqggiyq lpqystqhql sqfqhlpghl asnmlssvrl tpttptesha aflalpgnsg
      541 vitcgaagat qgyvqnhmgt qllsqqpsgn sgvtvyqavp wndfymqgap fsnhlcsrmp
      601 fpstaggqyf teqisstqpp clsssyflqv pnrttmgsmp ligkqkgvtp pdqssyqnhe
      661 tepeltslae reeaessskk gdavvdikee tnd
//
LOCUS       XP_053919710             273 aa            linear   VRT 09-MAR-2023
DEFINITION  C-type lectin domain family 2 member L-like [Cuculus canorus].
ACCESSION   XP_053919710
VERSION     XP_053919710.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063735.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 7% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..273
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..273
                     /product="C-type lectin domain family 2 member L-like"
                     /calculated_mol_wt=29749
     Region          149..258
                     /region_name="CLECT_NK_receptors_like"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in natural killer cell receptors (NKRs); cd03593"
                     /db_xref="CDD:153063"
     Site            order(204,228,243,245..246)
                     /site_type="other"
                     /note="ligand binding surface [chemical binding]"
                     /db_xref="CDD:153063"
     CDS             1..273
                     /gene="LOC104054954"
                     /coded_by="XM_054063735.1:1..822"
                     /db_xref="GeneID:104054954"
ORIGIN      
        1 msvnppgpsq fqesadvrep qrdllrtkff pgrfpfpfsv grrgcrlrat pgaahpgppt
       61 lpgadaetrg saaapgagsa igpdhapmgi pgsgarcrta sreglfsniw lwrgvagvlt
      121 aavilvlciq fvnhssakdf pvcpslelcp sgwlyfqrkc yylseteasw nssqslcslh
      181 nasllvienh helnfmlkit kqdpwiglyk rdeeffwvng naldnkltev kgsgncayle
      241 stgvsasgcy ltrkwvcsln tswhnksgws hhp
//
LOCUS       XP_009560757              92 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptonemal complex central element protein 3 [Cuculus canorus].
ACCESSION   XP_009560757
VERSION     XP_009560757.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009562462.2
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009560757.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..92
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..92
                     /product="synaptonemal complex central element protein 3"
                     /calculated_mol_wt=10672
     Region          1..85
                     /region_name="Synaptonemal_3"
                     /note="Synaptonemal complex central element protein 3;
                     pfam15191"
                     /db_xref="CDD:405806"
     CDS             1..92
                     /gene="SYCE3"
                     /coded_by="XM_009562462.2:1..279"
                     /db_xref="GeneID:104060651"
ORIGIN      
        1 maesepqeen ydnmlkvved lnrdleklle emekltvqaa wmaydmvvlr tnpdlansir
       61 hledaflsck eeikkkwqev ltesegeeqk kg
//
LOCUS       XP_053919927             269 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: C-type lectin domain family 7 member A-like
            [Cuculus canorus].
ACCESSION   XP_053919927
VERSION     XP_053919927.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063952.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 18% of CDS bases
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..269
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..269
                     /product="LOW QUALITY PROTEIN: C-type lectin domain family
                     7 member A-like"
                     /calculated_mol_wt=29492
     Region          <177..253
                     /region_name="CLECT"
                     /note="C-type lectin (CTL)/C-type lectin-like (CTLD)
                     domain; cl02432"
                     /db_xref="CDD:470576"
     Site            order(228,232,234,237,239..242,245..247)
                     /site_type="other"
                     /note="ligand binding surface [chemical binding]"
                     /db_xref="CDD:153063"
     CDS             1..269
                     /gene="LOC128851859"
                     /coded_by="XM_054063952.1:1..810"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     substituted 1 base at 1 genomic stop codon"
                     /db_xref="GeneID:128851859"
ORIGIN      
        1 mteeityadl rfmtleksqd relqsdrvkg igsargqfsp stiywletqq fsgrlpvmls
       61 vvgaanakmr sfcsccfxff ssvpdsssps scwrlatval gvfclssvia agllaarfil
      121 vchhvherde nftlqkaime slgqqldllq aqnlnltetv kqlatskgtq sislsedftm
      181 rsaqsyssys fxiglsrsgt egpwlwkdgs afspelfqiq rasssslqqc vclqgvnidt
      241 arcgeykyyi gervvdlavv qqvsysdrh
//
LOCUS       XP_053920021             320 aa            linear   VRT 09-MAR-2023
DEFINITION  C-type lectin domain family 12 member A [Cuculus canorus].
ACCESSION   XP_053920021
VERSION     XP_053920021.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064046.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 39% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..320
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..320
                     /product="C-type lectin domain family 12 member A"
                     /calculated_mol_wt=35142
     Region          205..317
                     /region_name="CLECT_NK_receptors_like"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in natural killer cell receptors (NKRs); cd03593"
                     /db_xref="CDD:153063"
     Site            order(260,284,301,303..304)
                     /site_type="other"
                     /note="ligand binding surface [chemical binding]"
                     /db_xref="CDD:153063"
     CDS             1..320
                     /gene="LOC104060629"
                     /coded_by="XM_054064046.1:1..963"
                     /db_xref="GeneID:104060629"
ORIGIN      
        1 mehgwstarr rrsrrfrsaa pehsalrdpr cgpgalrfpv lpprapprdp epgkgsrnqr
       61 pppmgagsaa atanaererr ggelrgtarr ggaapapppp mgaetcretp parsfqcsiq
      121 isflcfqlis gispilfyks ftcspgaedq aqtlepvlkr rkcrdslska sqpavvpgla
      181 tgfgilsill aialiwkmhd shpqcpepwi ayrgscysfs kerkdwhssq efcrvqgahl
      241 lvisdrsemd lfksmqtgcf siglrnstgs gwiwedgsif ngikvlsnsp vqhcvvqmkd
      301 hfqasscefl apwicekslr
//
LOCUS       XP_053920141             642 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: EF-hand calcium-binding domain-containing
            protein 4B [Cuculus canorus].
ACCESSION   XP_053920141
VERSION     XP_053920141.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064166.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 2% of CDS bases
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..642
                     /product="LOW QUALITY PROTEIN: EF-hand calcium-binding
                     domain-containing protein 4B"
                     /calculated_mol_wt=74083
     Region          <33..96
                     /region_name="FRQ1"
                     /note="Ca2+-binding protein, EF-hand superfamily [Signal
                     transduction mechanisms]; COG5126"
                     /db_xref="CDD:444056"
     Region          <179..>343
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          <513..610
                     /region_name="Rab"
                     /note="Ras-related in brain (Rab) family of small
                     guanosine triphosphatases (GTPases); cd00154"
                     /db_xref="CDD:206640"
     Site            order(513..515,517..522)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206640"
     Site            order(513..515,517..518)
                     /site_type="other"
                     /note="Rab family motif 3 (RabF3)"
                     /db_xref="CDD:206640"
     Site            521..522
                     /site_type="other"
                     /note="Rab family motif 4 (RabF4)"
                     /db_xref="CDD:206640"
     Site            530..535
                     /site_type="other"
                     /note="Rab family motif 5 (RabF5)"
                     /db_xref="CDD:206640"
     Site            558..562
                     /site_type="other"
                     /note="Rab subfamily motif 3 (RabSF3)"
                     /db_xref="CDD:206640"
     Site            565..568
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206640"
     Site            594..596
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206640"
     Site            610
                     /site_type="other"
                     /note="Rab subfamily motif 4 (RabSF4)"
                     /db_xref="CDD:206640"
     CDS             1..642
                     /gene="CRACR2A"
                     /coded_by="XM_054064166.1:75..2003"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     substituted 1 base at 1 genomic stop codon"
                     /db_xref="GeneID:104068410"
ORIGIN      
        1 mnrieedcas lvppgdaers rtgeqdpglt vwgkaheffq icdlegkgfv trqdmqrlhp
       61 elclslkele kvfvtldadg ngsltpkeft tgfsqfllgq ialnneimeq sesekacpfk
      121 ckesededee fqfsnlmdql gakmvlddes dmkqlwfqlr kdephllssf eeflvriysq
      181 lqeadnerne leyalkkkia aydeeiqhly eemeqqiqke reqfllkdtk rfqscsqele
      241 ckllskeqel eqlvqnqkrl eqkctellsg keetkventk lkltnqellr qlertshels
      301 laqqqlqvly eeasriqkek emevyyvtet lqreksgllk qldfcrernk qlkderdifx
      361 kkcktsvpka swkqrsgsvi gkyvedkilp nscsfeeddv fnnskrrnsa glngnfsgag
      421 atggmskalh lqriisiekd hxqlldrlvd kqlnrwtgea edasemeidk knteqsmehs
      481 pssskeqpvg kenlsnvrge ymasldflma karyrsvtkq ffrkadgviv myditvkdtf
      541 tavkqwlrsi eettgenilv lllgnktdek rreipmgmgk hlakdynlif yecsvysgyn
      601 tkasmlhlar ilekhedkvk ektielqsdt nktsccirpl ky
//
LOCUS       XP_053920237             267 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128851907 [Cuculus canorus].
ACCESSION   XP_053920237
VERSION     XP_053920237.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064262.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 19% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..267
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..267
                     /product="uncharacterized protein LOC128851907"
                     /calculated_mol_wt=29819
     CDS             1..267
                     /gene="LOC128851907"
                     /coded_by="XM_054064262.1:1..804"
                     /db_xref="GeneID:128851907"
ORIGIN      
        1 mtnftlrpsq pttteldpvi prsscrgvpr thgdalhswt tspwktnkqt hthlsrsgeg
       61 grshavpadr ssaspslsps lpahlrryal rhpghhapsr srlrtgsdrp lpgsalpgrr
      121 epegdlpgtg ggrcgprrlr darsrccwqs safegnrilg cikrsvasrl rkgilplyss
      181 lvrphleycv qfwnpqheed mevlervqrr atrmigglep lpyenrlrel glfslekrrl
      241 ggdlittfqy lrglqeswgg aihkglw
//
LOCUS       XP_053920323             493 aa            linear   VRT 09-MAR-2023
DEFINITION  acrosin-binding protein-like, partial [Cuculus canorus].
ACCESSION   XP_053920323
VERSION     XP_053920323.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064348.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 45% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the amino end.
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         <1..493
                     /product="acrosin-binding protein-like"
     Region          1..188
                     /region_name="PBP_sp32"
                     /note="Proacrosin binding protein sp32; pfam07222"
                     /db_xref="CDD:429354"
     CDS             1..493
                     /gene="LOC128851970"
                     /coded_by="XM_054064348.1:<1..1482"
                     /db_xref="GeneID:128851970"
ORIGIN      
        1 vlllrlapap gspllddkyr dffrslwppw kaevsctmrq tygclspgil kldqeenhgv
       61 vpkgwicsdf permqfesfc qfahyccfkg qfyvkvgsgi qdrdpragfc ltswcpagvy
      121 gaastttnha iagcpcpspp klessvqedt swkqrlwssi sklissalst ensldthgss
      181 pqrsqeagst agtaeeaaea aaphgsprag fcltswcpag vygaasattn caiagcpcps
      241 ppklespvqe etswkqrlws siskliswal stensldthg sspqhspeag agnspgtaee
      301 aaqapaphgr wtklgsrscl issllfsvnl sdlkndeavm ilcsvvmken cltslltksw
      361 keleerlfgf gdsvcdsmgr rhmdlhphsa fcslkmeqcq nrknlkrvhc dssnftnyis
      421 pqvsaqlqaa eketsssqpl qvnktenlgg qrveqwcsri asrgcedprv slwlkaeyna
      481 fqegdapaqv gaq
//
LOCUS       XP_053920457             311 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: acrosin-binding protein-like [Cuculus
            canorus].
ACCESSION   XP_053920457
VERSION     XP_053920457.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064482.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 7% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..311
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..311
                     /product="LOW QUALITY PROTEIN: acrosin-binding
                     protein-like"
                     /calculated_mol_wt=33296
     Region          57..>164
                     /region_name="PBP_sp32"
                     /note="Proacrosin binding protein sp32; pfam07222"
                     /db_xref="CDD:429354"
     CDS             1..311
                     /gene="LOC128851978"
                     /coded_by="XM_054064482.1:1..936"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /db_xref="GeneID:128851978"
ORIGIN      
        1 mapggtqeaa qaacfrgrrg sddpvlcgde gklshvsghq glegagketl wlwrfglltl
       61 lgsvtaslap apgsplsdde yrdffrslwp pwkaevsctm rqtygclspg ilkldreenh
      121 gvvpkgwics dfpermqfes fcqfahylcf kgqfyvkriq cpntsthknl flvgqheavg
      181 ygvkdqsspv reapgqasvs ppgallestg llllpptvps paapapsppk lespvqeets
      241 wkqhlwssis kliswalste nsldthgssp qrspeagags spgtaeeaaq apaphgrcla
      301 taaremrate c
//
LOCUS       XP_053920589             458 aa            linear   VRT 09-MAR-2023
DEFINITION  acrosin-binding protein-like [Cuculus canorus].
ACCESSION   XP_053920589
VERSION     XP_053920589.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064614.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 4% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..458
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..458
                     /product="acrosin-binding protein-like"
                     /calculated_mol_wt=50181
     Region          22..>117
                     /region_name="PBP_sp32"
                     /note="Proacrosin binding protein sp32; pfam07222"
                     /db_xref="CDD:429354"
     CDS             1..458
                     /gene="LOC128851982"
                     /coded_by="XM_054064614.1:288..1664"
                     /db_xref="GeneID:128851982"
ORIGIN      
        1 maslvcllgl ltllgsvtas lapapgspls ddeyrdffhs lrppwkavfs ctmrqrygcl
       61 spgilkldre enhgivpkgs icsdfpermq fesfcqfahy rcfkgqfyvk riqcpntsth
      121 knlflagqhe avgygvkdqs spvreapgqa svsppgalle stgllllppt vpspaapaps
      181 ptklespaqe etswkqrlws sisklislal stenssgths sspqrspeag stpgtaeeaa
      241 qaaaphgsls dlkndeavmi lcsvvmkenc ltslltkswk eleetlfgfg dsvcdsmgrr
      301 hmdlhphsaf cslkmeqcqn rknlkrvhcd sgnftnyisp qvsaqlqaae ketsssqplq
      361 vnnmenlggp rveqwcsqia srgcedprvs lwlkaeynal qegdapaqic dsngvrypny
      421 ctfkshqclq qslynqkmrs slhcpshtlf lrgrslhi
//
LOCUS       XP_009566414             133 aa            linear   VRT 09-MAR-2023
DEFINITION  islet amyloid polypeptide [Cuculus canorus].
ACCESSION   XP_009566414
VERSION     XP_009566414.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568119.2
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566414.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..133
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..133
                     /product="islet amyloid polypeptide"
                     /calculated_mol_wt=14336
     Region          1..120
                     /region_name="Calc_CGRP_IAPP"
                     /note="Calcitonin / CGRP / IAPP family; pfam00214"
                     /db_xref="CDD:459715"
     CDS             1..133
                     /gene="IAPP"
                     /coded_by="XM_009568119.2:116..517"
                     /db_xref="GeneID:104065618"
ORIGIN      
        1 mcnlklsvff ialsvtlscl katpieklls kaddlpdgas krqgwilpvm pqntlsgfge
       61 eiseqpaakt krshqlekrk cntatcvtqr ladflvrssn sigaiypptn vgsntygkrd
      121 tagllsrepq nna
//
LOCUS       XP_053920832             375 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: F-actin-capping protein subunit alpha-3
            [Cuculus canorus].
ACCESSION   XP_053920832
VERSION     XP_053920832.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064857.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 37% of CDS bases
            frameshifts          :: corrected 5 indels
            internal stop codons :: corrected 2 genomic stop codons
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..375
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..375
                     /product="LOW QUALITY PROTEIN: F-actin-capping protein
                     subunit alpha-3"
                     /calculated_mol_wt=42034
     Region          100..323
                     /region_name="F-actin_cap_A"
                     /note="F-actin capping protein alpha subunit; pfam01267"
                     /db_xref="CDD:460142"
     CDS             1..375
                     /gene="CAPZA3"
                     /coded_by="XM_054064857.1:1..1128"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 5 bases in 4 codons;
                     deleted 1 base in 1 codon; substituted 2 bases at 2
                     genomic stop codons"
                     /db_xref="GeneID:104065620"
ORIGIN      
        1 mvarsglfta aalvafgrts pwplvlgrvl sfplqphtfa rvsstlsald psptldppsv
       61 llqhhvdhvs slhlqppalw talsprtctr qelhepekvs lgrqkaawvg sxhnnknftp
      121 vlinrntvqa tyyddlrgkc fpdpqgkfsf efdhsrgvic kphlhnvmld erelwaenlh
      181 rglkvyvsch fpvxvfkkav gkrqmfvalv vvhryqxlnq xnsfwksywt fxpfttwitg
      241 ifllqinyfk danlyitvse sasenlnvid knqfamefvk fvkvedtkfh tailentqal
      301 gxknlwrklp vthtsmnwnk llnaqhlnih vsntevppcl pkhtfdmild ypgecgnchq
      361 sitplkmiqi ssdrk
//
LOCUS       XP_053920953             478 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: transmembrane protein 121B [Cuculus canorus].
ACCESSION   XP_053920953
VERSION     XP_053920953.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064978.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 4% of CDS bases
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..478
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..478
                     /product="LOW QUALITY PROTEIN: transmembrane protein 121B"
                     /calculated_mol_wt=49519
     Region          230..425
                     /region_name="CECR6_TMEM121"
                     /note="CECR6/TMEM121 family; pfam14997"
                     /db_xref="CDD:464432"
     CDS             1..478
                     /gene="TMEM121B"
                     /coded_by="XM_054064978.1:134..1570"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 3 bases in 2 codons"
                     /db_xref="GeneID:128851998"
ORIGIN      
        1 mhraasnqrs vssssgsfqp pppppphaad rqplfpggss sggsrrgsas ssgrrsstee
       61 eeeeeeeeds isiskplvpp paapppaaas plpsssssss hssgegspgr smtaaelyga
      121 aagpggaagg rrwgfqalsl vlllgqgall dlyliavtdl ywcswiatdl vlaagwgiff
      181 crnsrarrre rpppppgppp phplllhgpp ggrgaggraa gaptrggdfa yahlawliys
      241 iaftpkaali lgtsilelie lrlplgttgf rvtlalsapl lycllraigt egcgqlllpp
      301 qpppqhraaa aflatcldll dsfsllelvl qpgrpaplpa plrylliavy flclaspvlw
      361 lyelsaarpp gaarlalhll lpaglldapl lalrcllllr yqqplslfml knlfflacrg
      421 mealetcxas sappprrpps tdpppppppx aaplahglsd vdvgphgyvn alavtaqg
//
LOCUS       XP_053921062             269 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128852012 [Cuculus canorus].
ACCESSION   XP_053921062
VERSION     XP_053921062.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065087.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 8% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..269
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..269
                     /product="uncharacterized protein LOC128852012"
                     /calculated_mol_wt=28894
     CDS             1..269
                     /gene="LOC128852012"
                     /coded_by="XM_054065087.1:1..810"
                     /db_xref="GeneID:128852012"
ORIGIN      
        1 maklhafrvk ysvvkelmqp tscthtcksy rnregisevs rerrqhgntv evsgggltrg
       61 kqsrcsthfp agaaggtcvr lgevarparg scipdsgqav gswdprcprl aagiagqgss
      121 rrrsgrcrrg rgpagrcvag agrvtggwcc prgfpltlpl svlspraprm sgaegmhfrr
      181 pairrkfspf aaygaattrp avparrtpav lagrwravlq krtcgadnkr nvsrqcalvv
      241 krnqlqqtke rrkgmskctv savkvagcw
//
LOCUS       XP_053921301             501 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: BPI fold-containing family C protein-like
            [Cuculus canorus].
ACCESSION   XP_053921301
VERSION     XP_053921301.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065326.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 1% of CDS bases
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..501
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..501
                     /product="LOW QUALITY PROTEIN: BPI fold-containing family
                     C protein-like"
                     /calculated_mol_wt=55802
     Region          41..262
                     /region_name="BPI"
                     /note="BPI/LBP/CETP domain; Bactericidal
                     permeability-increasing protein (BPI) /
                     Lipopolysaccharide-binding protein (LBP) / Cholesteryl
                     ester transfer protein (CETP) domain; binds to and
                     neutralizes lipopolysaccharides from the outer membrane of
                     Gram-negative...; cl00188"
                     /db_xref="CDD:412206"
     Site            41..47
                     /site_type="other"
                     /note="BPI dimerizatation interface [polypeptide binding]"
                     /db_xref="CDD:238164"
     Site            order(46,51,54,58,61,112,153,155,165,212,216,220,253)
                     /site_type="active"
                     /note="apolar binding pocket [active]"
                     /db_xref="CDD:238164"
     Region          251..487
                     /region_name="BPI"
                     /note="BPI/LBP/CETP domain; Bactericidal
                     permeability-increasing protein (BPI) /
                     Lipopolysaccharide-binding protein (LBP) / Cholesteryl
                     ester transfer protein (CETP) domain; binds to and
                     neutralizes lipopolysaccharides from the outer membrane of
                     Gram-negative...; cl00188"
                     /db_xref="CDD:412206"
     Site            286..292
                     /site_type="other"
                     /note="BPI dimerizatation interface [polypeptide binding]"
                     /db_xref="CDD:238164"
     Site            order(291,296,299,303,306,364,397,399,408,445,449,453,479)
                     /site_type="active"
                     /note="apolar binding pocket [active]"
                     /db_xref="CDD:238164"
     CDS             1..501
                     /gene="LOC128852020"
                     /coded_by="XM_054065326.1:1..1506"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /db_xref="GeneID:128852020"
ORIGIN      
        1 milfasxmsl tgardkgekm lktwycfllc clslqleanp glkvritqkg ldygrkigme
       61 llkeavlket fpswsgqerf liakvnyvis ririnavdfp etsasfipst gislsvaras
      121 atisadwrmn twllkdqgrm tvyisglfve lifkvsrdst ghlsvllhnc qlrissvkvk
      181 lnggsgwiyt flsgylekpi hskldknlcl kinykiqmme aqlrkhevvr qidaftqidy
      241 slvstpavfn shmnldlkgt iypvgnhtdp pfvpapfvlp sevdsmlyvg issyflksas
      301 layyragafn itiskeiatt fnlntslfky fapeialryk tacpvllklm atsppevild
      361 tdrcilqitg yvevfavlpn stpqyiftgn ltastsaslt itkqkliisv llkrfqfslm
      421 hstfgsseqi spaenflsyt lqnviipvin aklgkgfplp nlahttlmgp rikinqghlv
      481 istdvlykhe ekedeelnsh s
//
LOCUS       XP_009558845             459 aa            linear   VRT 09-MAR-2023
DEFINITION  tyrosine 3-monooxygenase [Cuculus canorus].
ACCESSION   XP_009558845
VERSION     XP_009558845.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560550.2
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009558845.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 11% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..459
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..459
                     /product="tyrosine 3-monooxygenase"
                     /calculated_mol_wt=52692
     Region          13..118
                     /region_name="ACT"
                     /note="ACT domains are commonly involved in specifically
                     binding an amino acid or other small ligand leading to
                     regulation of the enzyme; cl09141"
                     /db_xref="CDD:471857"
     Region          126..456
                     /region_name="Biopterin_H"
                     /note="Biopterin-dependent aromatic amino acid
                     hydroxylase; pfam00351"
                     /db_xref="CDD:459776"
     CDS             1..459
                     /gene="LOC104058958"
                     /coded_by="XM_009560550.2:1..1380"
                     /db_xref="GeneID:104058958"
ORIGIN      
        1 mktdlveisg qkeeagkeke vhdiealnkr gnlesnredg ratliltltl cnvrktelsk
       61 aakvfemfqt qichfetrra rkpknsaddl difveceihs advsllltsl rrvaedvnas
      121 rqekvpwfpk kiqdldkchh litkydanld hghpgyadle ykkrreffad lafnyrsgdp
      181 lpgieyteqe tatwrevyrk lsslypthac sqyldafqql ekycgyqedn ipqlqdvsrf
      241 lkertgfqlr paagllsprd flaslafrvf qstqyirhfs spmyspepdc chellghvpm
      301 ladkqfaqfs qdiglaslgs seaeieklat lywftvefgl ckqngsikay gagllssyge
      361 lmyalsnkpe ykpfdpevta vhpyqdqafq pvyfiaenle dakaklqnym mkikkpfslh
      421 ydpytssiev mntpqkvkrv lrqtqeelkn fcltlenls
//
LOCUS       XP_053921516             449 aa            linear   VRT 09-MAR-2023
DEFINITION  translation initiation factor IF-2-like [Cuculus canorus].
ACCESSION   XP_053921516
VERSION     XP_053921516.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065541.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 28% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..449
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..449
                     /product="translation initiation factor IF-2-like"
                     /calculated_mol_wt=46182
     CDS             1..449
                     /gene="LOC128849178"
                     /coded_by="XM_054065541.1:1..1350"
                     /db_xref="GeneID:128849178"
ORIGIN      
        1 mgkppsrpqr prptpappra aagsrpvrar rshtprlsra prrlrpvsap rleplwkgsa
       61 srpeeeraes ggerttqsnv prlrergevp lcasgaclrl sisptpalmg iqmqedknhh
      121 hhrqrpepal tfsgtgafpp qpsgpsfaps lrasgsrsvp aaapllggtg scralggggr
      181 rgrsplfpgc agevaasppr cpeeqplcpv lllltplsaa prtgpagrpg gpggdrrfrr
      241 gppvlppgpl rgerrpcpgl pggeqpregq rhrgagrgea ppgpaaataa aspasaaagc
      301 raapapcrcp aaasdsecqa apfpflpsfl pslspapspl pgslrcqaap lrvspprtpc
      361 qpsrsaavrp aavplrrcrg agcsaplcpg lscsacvsvs clcmggrrrg aeaeparsha
      421 aqrqalsaqp aaaanaakpa hrrhrrcya
//
LOCUS       XP_053921632             407 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: target of Myb1 membrane trafficking
            protein-like [Cuculus canorus].
ACCESSION   XP_053921632
VERSION     XP_053921632.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065657.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 9% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..407
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..407
                     /product="LOW QUALITY PROTEIN: target of Myb1 membrane
                     trafficking protein-like"
                     /calculated_mol_wt=45759
     Region          <91..192
                     /region_name="VHS_ENTH_ANTH"
                     /note="VHS, ENTH and ANTH domain superfamily; cl02544"
                     /db_xref="CDD:470608"
     Region          256..344
                     /region_name="GAT_SF"
                     /note="GAT domain found in eukaryotic GGAs, metazoan
                     Tom1-like proteins, metazoan STAMs, fungal Vps27, and
                     similar proteins; cl03906"
                     /db_xref="CDD:470905"
     CDS             1..407
                     /gene="LOC104065897"
                     /coded_by="XM_054065657.1:1..1224"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon"
                     /db_xref="GeneID:104065897"
ORIGIN      
        1 marqavplqp ikvhggadiq lqpmeleley mgnhrqklfy qsllqavlkt wweshllsrr
       61 hpepvagllc lfvggsqpsd glsssdfscr pkeafqaiek tivenknfhe vilalmvpet
      121 cvkncghrfh vlvssqdfve gvlvrtillk nnspaivhdk lltliqswad afrsspdltd
      181 vvafyqdlrr kglefpmtdl dvlsltpqrt vytsnsqseq nspavnspqq mesilhpvtl
      241 paqrdtssdt pitpmpeqig klrselevvn gntmvmskvl tellpsqaep sdlellqeln
      301 rtcrpamqqh vlelilhvlh eqlteellli ndnlnnvflh yerylsppfs tllfhksllp
      361 legllshlfd lpesimlkmy qpassifank sssqvlviys cpfkpav
//
LOCUS       XP_053921743             321 aa            linear   VRT 09-MAR-2023
DEFINITION  urotensin-2 receptor-like [Cuculus canorus].
ACCESSION   XP_053921743
VERSION     XP_053921743.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065768.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 6% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..321
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..321
                     /product="urotensin-2 receptor-like"
                     /calculated_mol_wt=35226
     Region          1..274
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          1..24
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          33..54
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          70..92
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          114..130
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          157..180
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          207..229
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          246..271
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..321
                     /gene="LOC128852092"
                     /coded_by="XM_054065768.1:1939..2904"
                     /db_xref="GeneID:128852092"
ORIGIN      
        1 mllimclvgm agniytvvva sgrvagrsag slgvyvinla ladllylsti pfvvctyyah
       61 dwffgdvgcr lllsldlltm hasiflltam slerywavar plqargasna yrklasailw
      121 llsllltapm mvmtqlrerg gphkricvpt wmpasfrlyl tvlfttsvla pgvvlgvvya
      181 rlvwvyqssa wglglpvagr apsrwlfsri ftivlaywtc flpfwawqla glywgerlgi
      241 spaarvylnf gvtclaygns cinpflytll assyhqrpsh srmdtvqppa psqeamscqr
      301 egcgiplafg dsprsvgege g
//
LOCUS       XP_053921870             805 aa            linear   VRT 09-MAR-2023
DEFINITION  host cell factor 2 [Cuculus canorus].
ACCESSION   XP_053921870
VERSION     XP_053921870.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065895.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..805
                     /product="host cell factor 2"
                     /calculated_mol_wt=87653
     Region          15..337
                     /region_name="NanM"
                     /note="N-acetylneuraminic acid mutarotase [Cell
                     wall/membrane/envelope biogenesis]; COG3055"
                     /db_xref="CDD:442289"
     Region          24..62
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          74..124
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          128..188
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          191..242
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          246..312
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          436..>648
                     /region_name="PRK08581"
                     /note="amidase domain-containing protein"
                     /db_xref="CDD:236304"
     Region          <655..686
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(675..676,678..679)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          692..792
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(692,765,786)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(787..788,790..791)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..805
                     /gene="HCFC2"
                     /coded_by="XM_054065895.1:13..2430"
                     /db_xref="GeneID:104060212"
ORIGIN      
        1 maaaaaglsw rrvssstgpv prsrhghrav airelviifg ggnegiadel hvyntatnqw
       61 flpavrgdip pgcaahgfvc dgtrilvfgg mveygrysnd lyelqasrwl wkkvkpqaps
      121 tgsppcprlg hsfslygnkc ylfgglanes edsnnnvpry lndfyelelq hgsgvvgwsi
      181 pvtkgvlpsp reshtaivyc rkdlgspkmy ifggmcgcrl ndlweldiet mtwsrpetkg
      241 tvplprslht anvignkmyi fggwvpqsag geisahdgew kctgsfsyln ldttewigli
      301 sdcqedksnl lpgpraghca vavgtrlyiw sgrdgyrkaw nnqvcckdlw yldtekppap
      361 sqvqliratt nsfqvkwdev ptvegyllql hadspvpsag vpvtavpets vlssqggssl
      421 hqspqslpsv pypemkvdhp sqtnnvipnn vqvslssnsl lkvegkdkvt apenkitqet
      481 mknhadatgf kesnapsllp vctsspqtsa nvgelhdldk rtvnpdasvs stssaqtmvt
      541 qqavktesss tngavvkdet slttfnskse aaettcitps trvntgqtnd shsskapqrq
      601 mapaktrdrq wydvgifknn savvsqfyll peetlnfsnk mgsanvpdyr llkkqdlfpg
      661 tvyrfrvaai ngcgvgpfsk isefktcipg fpgapstvki tksvdcihls weppaspsgn
      721 ileysaylai rstqlqenps qlvfmriycg lktscivtaa qlsnahvdyt srpaivfris
      781 aknergygpa tqvrwlqdmk tsssk
//
LOCUS       XP_053921979             205 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear transcription factor Y subunit beta [Cuculus canorus].
ACCESSION   XP_053921979
VERSION     XP_053921979.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066004.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..205
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..205
                     /product="nuclear transcription factor Y subunit beta"
                     /calculated_mol_wt=22486
     Region          50..140
                     /region_name="HFD_NFYB"
                     /note="histone-fold domain found in nuclear transcription
                     factor Y subunit beta (NF-YB) and similar proteins;
                     cd22907"
                     /db_xref="CDD:467032"
     Site            order(50,52..53,56,82,85..86,90,93..94,97..98,101,
                     121..123,125)
                     /site_type="other"
                     /note="trimer interface [polypeptide binding]"
                     /db_xref="CDD:467032"
     Site            order(53..58,61,65..66,69..71,74..77,80,83..84,87..92,
                     94..97,100,109..113,116,120,124..125,128,132,135,139..140)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467032"
     Site            order(53,58..61,64,67,75..78,81,109..110)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:467032"
     CDS             1..205
                     /gene="NFYB"
                     /coded_by="XM_054066004.1:2195..2812"
                     /db_xref="GeneID:104060213"
ORIGIN      
        1 mdgdssttda sqlgiagdym ggshyviqph edtedsmndh edtngskesf reqdiylpia
       61 nvarimknai pqtgkiakda kecvqecvse fisfitseas erchqekrkt ingedilfam
      121 stlgfdsyve plklylqkfr eamkgekgig gtvttgdgls eelteeaftn qlpaglittd
      181 gqqqnvmvyt tsyqqisgvq qiqfs
//
LOCUS       XP_053922038             205 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear transcription factor Y subunit beta [Cuculus canorus].
ACCESSION   XP_053922038
VERSION     XP_053922038.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066063.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..205
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..205
                     /product="nuclear transcription factor Y subunit beta"
                     /calculated_mol_wt=22486
     Region          50..140
                     /region_name="HFD_NFYB"
                     /note="histone-fold domain found in nuclear transcription
                     factor Y subunit beta (NF-YB) and similar proteins;
                     cd22907"
                     /db_xref="CDD:467032"
     Site            order(50,52..53,56,82,85..86,90,93..94,97..98,101,
                     121..123,125)
                     /site_type="other"
                     /note="trimer interface [polypeptide binding]"
                     /db_xref="CDD:467032"
     Site            order(53..58,61,65..66,69..71,74..77,80,83..84,87..92,
                     94..97,100,109..113,116,120,124..125,128,132,135,139..140)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467032"
     Site            order(53,58..61,64,67,75..78,81,109..110)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:467032"
     CDS             1..205
                     /gene="NFYB"
                     /coded_by="XM_054066063.1:1351..1968"
                     /db_xref="GeneID:104060213"
ORIGIN      
        1 mdgdssttda sqlgiagdym ggshyviqph edtedsmndh edtngskesf reqdiylpia
       61 nvarimknai pqtgkiakda kecvqecvse fisfitseas erchqekrkt ingedilfam
      121 stlgfdsyve plklylqkfr eamkgekgig gtvttgdgls eelteeaftn qlpaglittd
      181 gqqqnvmvyt tsyqqisgvq qiqfs
//
LOCUS       XP_053922111             205 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear transcription factor Y subunit beta [Cuculus canorus].
ACCESSION   XP_053922111
VERSION     XP_053922111.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066136.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..205
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..205
                     /product="nuclear transcription factor Y subunit beta"
                     /calculated_mol_wt=22486
     Region          50..140
                     /region_name="HFD_NFYB"
                     /note="histone-fold domain found in nuclear transcription
                     factor Y subunit beta (NF-YB) and similar proteins;
                     cd22907"
                     /db_xref="CDD:467032"
     Site            order(50,52..53,56,82,85..86,90,93..94,97..98,101,
                     121..123,125)
                     /site_type="other"
                     /note="trimer interface [polypeptide binding]"
                     /db_xref="CDD:467032"
     Site            order(53..58,61,65..66,69..71,74..77,80,83..84,87..92,
                     94..97,100,109..113,116,120,124..125,128,132,135,139..140)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467032"
     Site            order(53,58..61,64,67,75..78,81,109..110)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:467032"
     CDS             1..205
                     /gene="NFYB"
                     /coded_by="XM_054066136.1:247..864"
                     /db_xref="GeneID:104060213"
ORIGIN      
        1 mdgdssttda sqlgiagdym ggshyviqph edtedsmndh edtngskesf reqdiylpia
       61 nvarimknai pqtgkiakda kecvqecvse fisfitseas erchqekrkt ingedilfam
      121 stlgfdsyve plklylqkfr eamkgekgig gtvttgdgls eelteeaftn qlpaglittd
      181 gqqqnvmvyt tsyqqisgvq qiqfs
//
LOCUS       XP_053922173             205 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear transcription factor Y subunit beta [Cuculus canorus].
ACCESSION   XP_053922173
VERSION     XP_053922173.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066198.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..205
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..205
                     /product="nuclear transcription factor Y subunit beta"
                     /calculated_mol_wt=22486
     Region          50..140
                     /region_name="HFD_NFYB"
                     /note="histone-fold domain found in nuclear transcription
                     factor Y subunit beta (NF-YB) and similar proteins;
                     cd22907"
                     /db_xref="CDD:467032"
     Site            order(50,52..53,56,82,85..86,90,93..94,97..98,101,
                     121..123,125)
                     /site_type="other"
                     /note="trimer interface [polypeptide binding]"
                     /db_xref="CDD:467032"
     Site            order(53..58,61,65..66,69..71,74..77,80,83..84,87..92,
                     94..97,100,109..113,116,120,124..125,128,132,135,139..140)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467032"
     Site            order(53,58..61,64,67,75..78,81,109..110)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:467032"
     CDS             1..205
                     /gene="NFYB"
                     /coded_by="XM_054066198.1:2077..2694"
                     /db_xref="GeneID:104060213"
ORIGIN      
        1 mdgdssttda sqlgiagdym ggshyviqph edtedsmndh edtngskesf reqdiylpia
       61 nvarimknai pqtgkiakda kecvqecvse fisfitseas erchqekrkt ingedilfam
      121 stlgfdsyve plklylqkfr eamkgekgig gtvttgdgls eelteeaftn qlpaglittd
      181 gqqqnvmvyt tsyqqisgvq qiqfs
//
LOCUS       XP_053922244             205 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear transcription factor Y subunit beta [Cuculus canorus].
ACCESSION   XP_053922244
VERSION     XP_053922244.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066269.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..205
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..205
                     /product="nuclear transcription factor Y subunit beta"
                     /calculated_mol_wt=22486
     Region          50..140
                     /region_name="HFD_NFYB"
                     /note="histone-fold domain found in nuclear transcription
                     factor Y subunit beta (NF-YB) and similar proteins;
                     cd22907"
                     /db_xref="CDD:467032"
     Site            order(50,52..53,56,82,85..86,90,93..94,97..98,101,
                     121..123,125)
                     /site_type="other"
                     /note="trimer interface [polypeptide binding]"
                     /db_xref="CDD:467032"
     Site            order(53..58,61,65..66,69..71,74..77,80,83..84,87..92,
                     94..97,100,109..113,116,120,124..125,128,132,135,139..140)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467032"
     Site            order(53,58..61,64,67,75..78,81,109..110)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:467032"
     CDS             1..205
                     /gene="NFYB"
                     /coded_by="XM_054066269.1:1233..1850"
                     /db_xref="GeneID:104060213"
ORIGIN      
        1 mdgdssttda sqlgiagdym ggshyviqph edtedsmndh edtngskesf reqdiylpia
       61 nvarimknai pqtgkiakda kecvqecvse fisfitseas erchqekrkt ingedilfam
      121 stlgfdsyve plklylqkfr eamkgekgig gtvttgdgls eelteeaftn qlpaglittd
      181 gqqqnvmvyt tsyqqisgvq qiqfs
//
LOCUS       XP_009560274             205 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear transcription factor Y subunit beta [Cuculus canorus].
ACCESSION   XP_009560274
VERSION     XP_009560274.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009561979.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..205
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..205
                     /product="nuclear transcription factor Y subunit beta"
                     /calculated_mol_wt=22486
     Region          50..140
                     /region_name="HFD_NFYB"
                     /note="histone-fold domain found in nuclear transcription
                     factor Y subunit beta (NF-YB) and similar proteins;
                     cd22907"
                     /db_xref="CDD:467032"
     Site            order(50,52..53,56,82,85..86,90,93..94,97..98,101,
                     121..123,125)
                     /site_type="other"
                     /note="trimer interface [polypeptide binding]"
                     /db_xref="CDD:467032"
     Site            order(53..58,61,65..66,69..71,74..77,80,83..84,87..92,
                     94..97,100,109..113,116,120,124..125,128,132,135,139..140)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467032"
     Site            order(53,58..61,64,67,75..78,81,109..110)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:467032"
     CDS             1..205
                     /gene="NFYB"
                     /coded_by="XM_009561979.2:62..679"
                     /db_xref="GeneID:104060213"
ORIGIN      
        1 mdgdssttda sqlgiagdym ggshyviqph edtedsmndh edtngskesf reqdiylpia
       61 nvarimknai pqtgkiakda kecvqecvse fisfitseas erchqekrkt ingedilfam
      121 stlgfdsyve plklylqkfr eamkgekgig gtvttgdgls eelteeaftn qlpaglittd
      181 gqqqnvmvyt tsyqqisgvq qiqfs
//
LOCUS       XP_053922417             868 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC104057267 [Cuculus canorus].
ACCESSION   XP_053922417
VERSION     XP_053922417.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066442.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 50% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..868
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..868
                     /product="uncharacterized protein LOC104057267"
                     /calculated_mol_wt=93757
     Region          1..135
                     /region_name="PTZ00018"
                     /note="histone H3; Provisional"
                     /db_xref="CDD:185400"
     Site            order(40..48,50,64..67,70,73,84..87,117..119,121)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:467036"
     Site            order(45,48,51..52,55..56,58,60,62..63,67..68,70..72,
                     74..75,77,79,82..86,88..89,92..93,96..98,100..102,
                     104..106,109,118..122,126,129)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467036"
     Site            order(49,52..53,56..57,59,95,99,102,109,113,118)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:467036"
     Region          <66..424
                     /region_name="PksD"
                     /note="Acyl transferase domain in polyketide synthase
                     (PKS) enzymes [Secondary metabolites biosynthesis,
                     transport and catabolism]; COG3321"
                     /db_xref="CDD:442550"
     Site            order(107,110..111,114..115,117,123..124,127..128,
                     130..132)
                     /site_type="other"
                     /note="heterotetramer interface [polypeptide binding]"
                     /db_xref="CDD:467036"
     Region          477..570
                     /region_name="HFD_H2B"
                     /note="histone-fold domain found in histone H2B and
                     similar proteins; cd22910"
                     /db_xref="CDD:467035"
     Site            order(478,480,483,485,487..489,491..493,496..503,505..506,
                     509..510,513..514,516..518,520..522,526,536..537,539,
                     542..543,546,549..551,554,557..559,561..562,565..566,
                     569..570)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467035"
     Site            order(478..484,487..488,490,501..503,536)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:467035"
     Site            order(482,486..488,490..491,494..496,501..503,507,543,547,
                     556..557,559..560,563..564,566..567,570)
                     /site_type="other"
                     /note="Hif1 binding site [polypeptide binding]"
                     /db_xref="CDD:467035"
     Site            order(509,512..513,515..516,519,524,527,530..532,540..541,
                     544,548..549)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:467035"
     Region          733..868
                     /region_name="PTZ00018"
                     /note="histone H3; Provisional"
                     /db_xref="CDD:185400"
     Site            order(772..780,782,796..799,802,805,816..819,849..851,853)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:467036"
     Site            order(777,780,783..784,787..788,790,792,794..795,799..800,
                     802..804,806..807,809,811,814..818,820..821,824..825,
                     828..830,832..834,836..838,841,850..854,858,861)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467036"
     Site            order(781,784..785,788..789,791,827,831,834,841,845,850)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:467036"
     Site            order(839,842..843,846..847,849,855..856,859..860,
                     862..864)
                     /site_type="other"
                     /note="heterotetramer interface [polypeptide binding]"
                     /db_xref="CDD:467036"
     CDS             1..868
                     /gene="LOC104057267"
                     /coded_by="XM_054066442.1:31..2637"
                     /db_xref="GeneID:104057267"
ORIGIN      
        1 martkqtark stggkaprkq latkaarksa patggvkkph ryrpgtvalr eirryqkste
       61 llirklpfqr lvreiaqdfk tdlrfqssav malqeaseay lvglfedtnl caihakrvti
      121 mpkdiqlarr irgeresslt teavegatla fegvhhvhgs drlplgvlgv gdgvtnhvlq
      181 edlehaarll vdeprdaldt aapsqaadsr lgdaldvvaq hlavalsapl aeplsafasa
      241 rhpatpqika acggkraqaa lymassptwl rtaagpgrgg lcpapspagr gvravasdrg
      301 rrygagfgsa agsarapgir pwggrsrrll haargptsrp hrgrgeagpr rarvcskiqp
      361 maqhgldvgq hpalrdrhla qqlvellvva dgelqvagdd arllvvagrv arqlqdlgrq
      421 lplrssrctr ptgncspard erdlalaraf ppcfprpdmk gskkavtktq kkgdkkrrkt
      481 rkesysiyvy kvlkqvhpdt gisskamgim nsfvndifer iageasrlah ynkrstitsr
      541 eiqtavrlll pgelakhavs egtkavtkyt sskrtralyr asgdaggagk vgvffnkafr
      601 kglkswppgt kpaikpsvae peqnpcgfcv laklqrsagl pvplggtelk dessestvts
      661 srggdcgagn shhprhrplq ngglfkppll pngirafplt nrravlaiks gplplllaqt
      721 lvsqcsaapl gemartkqta rkstggkapr kqlatkaark sapatggvkk phryrpgtva
      781 lreirryqks tellirklpf qrlvreiaqd fktdlrfqss avmalqease aylvglfedt
      841 nlcaihakrv timpkdiqla rrirgera
//
LOCUS       XP_053922524             964 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: myelin regulatory factor-like protein [Cuculus
            canorus].
ACCESSION   XP_053922524
VERSION     XP_053922524.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066549.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 4% of CDS bases
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 2 genomic stop codon
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..964
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..964
                     /product="LOW QUALITY PROTEIN: myelin regulatory
                     factor-like protein"
                     /calculated_mol_wt=107969
     Region          320..467
                     /region_name="NDT80_PhoG"
                     /note="NDT80 / PhoG like DNA-binding family; pfam05224"
                     /db_xref="CDD:398753"
     Region          514..631
                     /region_name="Peptidase_S74_CIMCD"
                     /note="Peptidase S74 family, C-terminal intramolecular
                     chaperone domain of Escherichia coli phage K1F
                     endosialidase and related proteins; cl16452"
                     /db_xref="CDD:418048"
     Site            order(519..526,529,534..535,537,539..544,549,552,556..565,
                     579..584,588,590,592,611..614,616..619,621..625,627..628)
                     /site_type="other"
                     /note="trimer interface [polypeptide binding]"
                     /db_xref="CDD:381748"
     Region          826..950
                     /region_name="MRF_C2"
                     /note="Myelin gene regulatory factor C-terminal domain 2;
                     pfam13888"
                     /db_xref="CDD:464020"
     CDS             1..964
                     /gene="MYRFL"
                     /coded_by="XM_054066549.1:1..2895"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     substituted 2 bases at 2 genomic stop codons"
                     /db_xref="GeneID:104063975"
ORIGIN      
        1 mplqrksllr yrfsfgfqmy qlatrvtkis siihllqtrq drvdfplcrr vgsvsxsevs
       61 mipsqfhsii xvfltfshlg qdihgalenp ivdtsmleef issdiefgtl qsqlpdsppd
      121 sgselcsppk lqtpwrdatw psglqpllpc paavapgklp crfmetcsdp sasghaysip
      181 qgcclktena vtpwnnstss sclgfnyssf qpnasqvsgi saasgrkrkl sqllgdatds
      241 pvpcqdsnqa tvtdcaaevq eydsdgqnat sekccqaltw qpyqssqwns lfnssyaklp
      301 aigyhivtdk gfnfsttdda fvcqkknhfq itvhiritgh pkyvktqlgg kpiekfylka
      361 fgikvespnq ivaieqsqsd rskrtfhpvr vdlpgdqitk vtlgrlhfse ttannmrkkg
      421 kpnpdqryfm lvvglyavsq dqfyllsasv sekiivrasn pgqfendsdv lwqrghipet
      481 tvyhgrvgin tdapdealvv cgnakvmgrv mhpsdsrakq niwevdtneq lrrikqmrlv
      541 eydykpefas vmgikntret giiaqevkel lpqavrdvgd vacndgekie nflmvdkdqi
      601 fmenvgavkq lckltnnlev rieeleqwnr klarlkrmss lkstvseesk vsrysraasl
      661 lpwkksvplk sskvclskrk escsmkifwv tiialvavma lcaltistiy llsmhdsrfe
      721 kqpvysssss vvlspsttta alqgestisq ntqpisripe vnfcdilpcd kvyccpihqr
      781 kvlslsyekt sakekqnknn mlseqdtvkk mngkpdlgnd widttissiq iletqqsidn
      841 rycsknlqcg sgnysyvipv nkytprdiki sleinttepl iiflckitfg nycsqyssrq
      901 nirkiftdtt qgrqhiwalp vaafydsayy frvavpgveg cstnpyfagm fftdyyfyfy
      961 rqcn
//
LOCUS       XP_053922655             702 aa            linear   VRT 09-MAR-2023
DEFINITION  Bardet-Biedl syndrome 10 protein [Cuculus canorus].
ACCESSION   XP_053922655
VERSION     XP_053922655.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066680.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..702
                     /product="Bardet-Biedl syndrome 10 protein"
                     /calculated_mol_wt=75745
     Region          38..>367
                     /region_name="Cpn60_TCP1"
                     /note="TCP-1/cpn60 chaperonin family; pfam00118"
                     /db_xref="CDD:395068"
     CDS             1..702
                     /gene="BBS10"
                     /coded_by="XM_054066680.1:1..2109"
                     /db_xref="GeneID:104061143"
ORIGIN      
        1 maaaeavava lagavrralg prggralrar rgggavgltr dgrallealg agppvgrlma
       61 acacshraat gdgaktfvvl ldavlaglqa agngnmrral qvfearvleh avaqglrrhv
      121 mvvqwerale allepylcgr vgpgeqrela rlcgelcrcc aldpagngpt alhllgrhfa
      181 qlhltvaglp vsrsrvlpgi ilhrdfaayc pargdlcall vtqplraala gpgvefmvgs
      241 evqygaslhw vsrrteavvk hlqsnnvkll lssvkqeedi iyfaklygms vveclseeev
      301 aliceitgvs pytpfgdnlh reitetavat fcqplllgsk ryvhvgftsv cafqphclil
      361 cgpvdavneq haaafqgaft mlqqvfksvd qreerkaegk sqneatgvcs wcsspvpkpl
      421 ltkniscnsn hvsegqlkth sdeteahivn pdlqgsenpa ciqtnlqips nlishikels
      481 vategdgfsr dvqkpdakce hpgdvhesyk sdllvgnqrn yttavsaahn ddtvtvcghl
      541 dvgkdpekts cnivpfkqge scvstaqncs sclieagsvl pvggyfevll hyyiqyytkq
      601 fqqsevtvvs nvvadallsi pkslygttkr ngftefylkv vnalrknqpl pvyeeglesv
      661 yckyqlvvsv lhcvteilsi dliigvkrpl qkiedddsed df
//
LOCUS       XP_053922781             311 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: uncharacterized protein LOC128852221 [Cuculus
            canorus].
ACCESSION   XP_053922781
VERSION     XP_053922781.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066806.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 49% of CDS bases
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..311
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..311
                     /product="LOW QUALITY PROTEIN: uncharacterized protein
                     LOC128852221"
                     /calculated_mol_wt=33243
     Region          38..>106
                     /region_name="TM140"
                     /note="TM140 protein family; pfam14985"
                     /db_xref="CDD:464421"
     CDS             1..311
                     /gene="LOC128852221"
                     /coded_by="XM_054066806.1:1..936"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /db_xref="GeneID:128852221"
ORIGIN      
        1 mqqprgppps cfaagiptas lttvsrkhas trtgllqqrc ighllfklil leaagtvalm
       61 lyallweagn lvnlpdkcid fynfclwnet teklqcldav phalearkqi paqikpniks
      121 rtslchfcpk dvsckvkvvv ftghdlsssa tdtarikale rallsgmgsr hpwgrgkedr
      181 agkgkhgrap patqapskpc pgraaepgge etaraepkpr gqrgragrgp aatpeprthk
      241 tiilsgglga fpfqisxwih lsdftgglla llgtqallll qiltatmrls wakhahlcqs
      301 pfteealpaa i
//
LOCUS       XP_053922911            2729 aa            linear   VRT 09-MAR-2023
DEFINITION  otogelin-like protein [Cuculus canorus].
ACCESSION   XP_053922911
VERSION     XP_053922911.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066936.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2729
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2729
                     /product="otogelin-like protein"
                     /calculated_mol_wt=299463
     Region          <80..145
                     /region_name="VWD"
                     /note="von Willebrand factor (vWF) type D domain;
                     smart00216"
                     /db_xref="CDD:214566"
     Region          194..254
                     /region_name="C8"
                     /note="C8 domain; pfam08742"
                     /db_xref="CDD:462584"
     Region          264..317
                     /region_name="TIL"
                     /note="trypsin inhibitor-like cysteine rich domain;
                     cd19941"
                     /db_xref="CDD:410995"
     Site            order(273,277,290,294)
                     /site_type="other"
                     /note="reactive site [polypeptide binding]"
                     /db_xref="CDD:410995"
     Region          346..508
                     /region_name="VWD"
                     /note="von Willebrand factor (vWF) type D domain;
                     smart00216"
                     /db_xref="CDD:214566"
     Region          551..611
                     /region_name="C8"
                     /note="C8 domain; pfam08742"
                     /db_xref="CDD:462584"
     Region          619..674
                     /region_name="TIL"
                     /note="trypsin inhibitor-like cysteine rich domain;
                     cd19941"
                     /db_xref="CDD:410995"
     Site            order(628,632,645,649)
                     /site_type="other"
                     /note="reactive site [polypeptide binding]"
                     /db_xref="CDD:410995"
     Region          717..782
                     /region_name="TIL"
                     /note="trypsin inhibitor-like cysteine rich domain;
                     cd19941"
                     /db_xref="CDD:410995"
     Site            order(726,740,753,759)
                     /site_type="other"
                     /note="reactive site [polypeptide binding]"
                     /db_xref="CDD:410995"
     Region          813..967
                     /region_name="VWD"
                     /note="von Willebrand factor (vWF) type D domain;
                     smart00216"
                     /db_xref="CDD:214566"
     Region          1002..1076
                     /region_name="C8"
                     /note="This domain contains 8 conserved cysteine residues;
                     smart00832"
                     /db_xref="CDD:214843"
     Region          1081..1234
                     /region_name="beta-trefoil_ABD_ABFB-like"
                     /note="Arabinose-binding domain (ABD), beta-trefoil fold,
                     found in the ABFB family; cl49624"
                     /db_xref="CDD:483964"
     Site            order(1097,1207..1211,1223,1227)
                     /site_type="other"
                     /note="sugar binding site [chemical binding]"
                     /db_xref="CDD:467807"
     Site            order(1159..1160,1162..1163,1179)
                     /site_type="other"
                     /note="sugar binding site [chemical binding]"
                     /db_xref="CDD:467807"
     Region          1249..1300
                     /region_name="TIL"
                     /note="Trypsin Inhibitor like cysteine rich domain;
                     pfam01826"
                     /db_xref="CDD:460351"
     Site            order(1252,1256,1268,1273)
                     /site_type="other"
                     /note="reactive site [polypeptide binding]"
                     /db_xref="CDD:410995"
     Region          <1356..1806
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1878..2050
                     /region_name="VWD"
                     /note="von Willebrand factor (vWF) type D domain;
                     smart00216"
                     /db_xref="CDD:214566"
     Region          2089..2154
                     /region_name="C8"
                     /note="This domain contains 8 conserved cysteine residues;
                     smart00832"
                     /db_xref="CDD:214843"
     Region          2158..2216
                     /region_name="TIL"
                     /note="Trypsin Inhibitor like cysteine rich domain;
                     pfam01826"
                     /db_xref="CDD:460351"
     Region          2646..2729
                     /region_name="GHB_like"
                     /note="Glycoprotein hormone beta chain homologues;
                     cl21545"
                     /db_xref="CDD:473907"
     CDS             1..2729
                     /gene="OTOGL"
                     /coded_by="XM_054066936.1:1..8190"
                     /db_xref="GeneID:104061161"
ORIGIN      
        1 meqpaqrqvt vtvsyfrlke agaklyptpv kikmgfanhg dsiilkhsma stitsqeiap
       61 iflrktailq npstlfglml pqtvgnaffe rladyilvkt tfgfslawdg nsgiyiklte
      121 ehkgklcglc gnfngdksdd lilqnigeyt ediaefansw avqtsddiac vptasdfssp
      181 csadaested iffkcqiflq fpflschesi dpysyissci ndlcrvddde tycravteya
      241 racshagspv rdwrddfpac tekcedsfvh rdcisccppt ctfekdclgs nlhcldgcyc
      301 pdglimengt cisvsncpcv yhgtafpvgs kieqecsnci ctggiwnctd hdcpaecsit
      361 ssshfttfdg rhftflgicq yilvkgtgkn kftitlqkap cgqnfdhaci esitlvledd
      421 vnkqvtltry gqvqtgpnqg fnlngaieiq nvsslfvllk tsfglkilfa kdgeriyvql
      481 nvgwkrrtlg lcgtyngnlr ddflspagmi egtpqlhana wkvssacsip inipvvdpcn
      541 vnqqnvgyas hcdiinqevf apchayispg lyyqlcrfda ckcgssclcn alahyayvcg
      601 khgvivdfrs hisycavmch sgmlyhqcss fckhscasls manicgddca egcncpdgny
      661 feesvnfcvs isachchykg kvlqpgesfp tpvgscqcln gtvkcieast entvhicpeg
      721 kiyydcrspv pglpaagvnc giscanlamn fscvpsppca sgcicppgma ehkgkcyipd
      781 scpctwkdre flsgeviatp cytcvcrrgi fnctsypcpa vctiygdrhy ytfdgleydy
      841 vsdcqvyllk stdnssmsii aqnkkcfdnd ivcsknvfit vgdteiyfse psekqktltg
      901 qenksnyqlw kagyytvirf peqditilwd kktmmhvevg prwkgklsgl cgnfdkytsn
      961 dlttsnnmev rnaqvfgdsw vlgqckspne tlrpcevhqk tfpyakkecs ilysdvfapc
     1021 rnvidvtsfv knchtdtcnc nlggdceclc tsiaayahkc cqqgvvihwr spslcaydce
     1081 hynrglgegp yilanygqnd tiiganvssr qifplprtga ygniffsfmi tpglfkdkdl
     1141 slslvslesa erpnyflyvh dnetvglkhw qasasfrrra tffhhqglwi pglsafelhs
     1201 kkgffiilts savkvakydg seefkhlssf sieelsasvp yrrmcewrye scanpcvktc
     1261 sdpegtackf lplvegclpy cpknmildei tlkcvypedc ipvtptesai gkkpsllish
     1321 mgaamdkfpq tpplfvtlgt esthtggtdk vtmkanttlr gmnasaqspt dlysleasna
     1381 atystfslps tveppdalhs tssptvlskl isstdlpaal qasavtsrtl sstasitlpi
     1441 tiatptalls aspsptrsal ltpisvvvvp fpletsttql gtlsptsalt tltskpsfvt
     1501 selpagigks rnpsvshskg aavfsevsls sllagratft rpvfflgkqs ssvssseedg
     1561 tvsaisagli tqsttpmimn trvnatslka pyifakipps ssgssliasd ttvasritte
     1621 ttdssvadle fytaaasvpn ttetpthvsl kslftsavtq asqstketpk iiimktsgtt
     1681 splsqtkstt ftasevkhat lfertvdile stqpsheqrn itktksttvk nlslsgvphv
     1741 ttsdwskvpv qktikpyfnl teptelqtrn ltnlshssgg malpsssepv etqtslaste
     1801 tmtamadkaf fgtmtytlms tasecvpkyl epvdkcsqyv cvntgwmlyn lsrncpkdvq
     1861 kpdcgfrgmp vqvntdsccp ewecpcqcsv lselsvitfd gnnialcnma syilvklpge
     1921 nivahiekcp anqsansirk pvppastsgl cfkklnvtth tykllidrla rkvivdsviq
     1981 slpfskegln iqdtgamyvi stpagisikw ahvtgiidiq ygpysntsmk teglcgvcng
     2041 dptddlkmqn rtiiknleei evfiksweie ksldvttrrp vrnctenncs ycmellnrst
     2101 ftpchkkvsp qefcekmwin styfwnyecd alsayvalcn khnicikwrt pnycslscpe
     2161 gkeyqpcvqp ceaktclnkw fyedspcsyl redcvckngt ilhrtdtdlc ipeekctctd
     2221 nkgqprsage iwngstkgcc myncsengsi vtvepecded pplicerege vivhvieera
     2281 ccpkkvcecn mslcdtitpi ckaneklvvg yhplsccpqy rcecdpsvcf nateldcred
     2341 qfiveakqed pccfsylcvc esciepvplc negeiltvdl ntiqyccphy ycvcdenlcs
     2401 eppmnctddt tlvkekipgq ccpewhcecs centtvpick lgevkkidss vssacgcthy
     2461 icekdevcif qeftvlnpgq sviqyldgdl cytvqclqek dentgynamy ftmvncsqqc
     2521 eahqiyipps shhtccgtcq nvscsfhten gtlivyeegs twssnctnyk cakspagaii
     2581 vgssvscppf ndtectkngg ivqmyndgcc ktcsglgllp faispvvptn sincepgkke
     2641 ericqkmtir ttirkndcis qspinvascd gkcpsatifn vnidshlrfc kccreigtrn
     2701 ltiplrcsgn gteimyvfqe pvdcscqwn
//
LOCUS       XP_053923043             169 aa            linear   VRT 09-MAR-2023
DEFINITION  cuticle protein 16.5-like [Cuculus canorus].
ACCESSION   XP_053923043
VERSION     XP_053923043.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067068.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 100% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..169
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..169
                     /product="cuticle protein 16.5-like"
                     /calculated_mol_wt=17379
     CDS             1..169
                     /gene="LOC128852235"
                     /coded_by="XM_054067068.1:1..510"
                     /db_xref="GeneID:128852235"
ORIGIN      
        1 mpcgrapspr vllpcsraps praphlrgcp isvgapatft aapspwvphl hgrpisagap
       61 sprvpylhgy pisvgtpspr vpylrgypis vgtpflqvpr lrrransmga paistgapsp
      121 wvphlrrcli svgapaismg apaismgapa ismgcpistg apspwvlyl
//
LOCUS       XP_053923147            1535 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: leucine-rich repeat and IQ domain-containing
            protein 1 [Cuculus canorus].
ACCESSION   XP_053923147
VERSION     XP_053923147.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067172.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1535
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1535
                     /product="LOW QUALITY PROTEIN: leucine-rich repeat and IQ
                     domain-containing protein 1"
                     /calculated_mol_wt=177682
     Region          <160..612
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          674..695
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          696..716
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          699..953
                     /region_name="PPP1R42"
                     /note="protein phosphatase 1 regulatory subunit 42;
                     cl42388"
                     /db_xref="CDD:455733"
     Region          717..738
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          739..760
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          761..775
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          783..804
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          827..850
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          851..872
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          873..898
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          1131..1157
                     /region_name="IQCD"
                     /note="IQ (isoleucine-glutamine) motif containing D
                     (IQCD); cd23767"
                     /db_xref="CDD:467745"
     Region          1167..1193
                     /region_name="IQCD"
                     /note="IQ (isoleucine-glutamine) motif containing D
                     (IQCD); cd23767"
                     /db_xref="CDD:467745"
     CDS             1..1535
                     /gene="LRRIQ1"
                     /coded_by="XM_054067172.1:21..4628"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /db_xref="GeneID:104058242"
ORIGIN      
        1 msediegier eieielsris vssseaddpn tevsddavsd seiisddlpe sivsylnfik
       61 srnedaekli lqdsedeetm snicgavsch tsdyvaelpf eynenpeqfk krvlpekene
      121 dlqiattpsy ssqstsdkvv tdghfvtadv emfislthhe eeekcrqafe qwekrqkele
      181 dekrkkwkae reaqekqnee eharkmqlle efeaesmkle llrkqhqtai edelrkdkkv
      241 wrdkmmqhee limklqlqme eekkaleeqk akekqhlaeq qnaaavkiqa ryraflvrkk
      301 yvpilkewky eikrkqkive qierqikeke ekmsrqmeen rqkeeerkkr hrplenqeyl
      361 eqvrrceeye kkketlrlek qlqtrreehr kigeirakav rresgennkk niekdkqtek
      421 tkvieeqkke lskqveeqke kwtetvdetn nwiipaeknl tpipnmlgse ktehssqvnn
      481 enirlnsith aeenysqtrd lnkvpnnqts knmsvniran dmveskanni cssplniqpn
      541 asngevkdqf secetmkktv fltedvneel rvtwdriqgv aecssrvlhd diekkrinwm
      601 ktckswskiy eenqrkqaai kktprkssvs kmpplsiqei iqsgpwstlq qvttltledl
      661 ppcslstlse csnlqvltlr rcgvvvlegl ssckdlkyin meenniqfid crnlenlcil
      721 ilnknhlssv cgldgcinlr nlelsynrit riggleslks lqrlivdhnq lvstkglcea
      781 ptlihldcsf nhltevegie ncgllqilkl qgnnlqelpr lenhvllrel ylddnsisdv
      841 rmlsfywlpl lqilllsqns ltelmplnsf vslekldvkn nclsdlkdvi twltgchklr
      901 elslsgnpll qernwrpslc kvlprlqfld genlnchtlp ttdgeskart flelcqvqie
      961 enialkekaa dlgmassids aqeqcwyfnq lmklsikhry aheygelnit drngpealqn
     1021 hlkptstacp qennlfimga tenkqvlldp serwittghi qatvinssip vhhkenkedq
     1081 rvkqkstesc inysgeskgn nnisaqltlq qsvivasnmr rdlqyfendk erlhraasti
     1141 qslwrqyhar rkvdrtkten nqftevlrqr hqaatliqaf wkgfllrkkl asalaavksd
     1201 eaeddyeevn vddfvfseaa leeewltvds trfpsktlll snqlhwpkky sipsnssehs
     1261 nslplspqec wqcvsrphsy saqnihfhgs sgkgtisqfs dwkekkkfsf msgkeekise
     1321 ewgfkdista qlmlkrahkm kpknysgkns dpavrlalfk nnenkhlhvk ppkktqpina
     1381 gyfegkeeef sqldttldek sqrrkdltyq wlhtqlldye aassknmkcc rflpeldpai
     1441 sdsrqvqlva spvsredmdl dlvsmasgsa ltenreknkq phrhsarssk knipspekpc
     1501 lgpshkeris frdhpvqlsg gwgrgkqrqk lknis
//
LOCUS       XP_053923407            3242 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: cilia- and flagella-associated protein 54
            [Cuculus canorus].
ACCESSION   XP_053923407
VERSION     XP_053923407.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067432.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 2% of CDS bases
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3242
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3242
                     /product="LOW QUALITY PROTEIN: cilia- and
                     flagella-associated protein 54"
                     /calculated_mol_wt=366014
     Region          120..668
                     /region_name="CFAP54_N"
                     /note="Cilia- and flagella-associated protein 54;
                     pfam14858"
                     /db_xref="CDD:464350"
     CDS             1..3242
                     /gene="CFAP54"
                     /coded_by="XM_054067432.1:1..9729"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /db_xref="GeneID:128852251"
ORIGIN      
        1 mtlppslvpl vrsqkgtlah spvtdtakaq tparereaag raqrrwvlap arpppehvag
       61 rrrrvpgrrm ahpadpppas ffgavapgnp vvdsfeaelr aalgwlrrpg gaeeappqqh
      121 rlhrrgantl fniwikykpr lpewyynekl lkvgdslvqi keyklallqc ygrylqqfvs
      181 gnldeiiddv hqfkstffpn gfrdknamlt fhalqqrnvc tyhmvcssdr nlqnqeslqt
      241 cfnvlsllri tmqvalpred lcwliyngti hiyaicrhlm mrgqstkvle yllwasicme
      301 ssipllsvhy ltwratlyta vsqcyfdcqa gihgevfarr glikidelkq leniscslen
      361 setkkifrea tikmsvmifk ravyesrrks kscvqpklrv swkeaqnlpg shsitkrllt
      421 emfdsaaaqf lailealsds skhvlrrvsp vpdeteihdv iselffagle ilsggvsstd
      481 iqgshctshf giinasstll qliltgeegv sgdaavkfik lafsyekwdv fdsaielvvn
      541 flqaqddptw kkaemelkll tvvqpllfpk klkpvfslse nntkearvph dsekkqtfem
      601 svesslkhge psqdliilat tlfsyistsk qnhqpdkeml advvmilwqk ckpglqqiqm
      661 ngsdyleyis eskayqwfyv lwiineviqk ssiadtdvvm laettlhlta ilenvaests
      721 kpkekagkrr aslsqdetcd ipeilmkspa eqlqsayesl ekaingmntf rfngresifd
      781 ncctkvdssd qnlssllgcg ndktgtgnsf vmdlhleliq aqhrvavkll kmtegtqkdd
      841 rshksskfyv knnkeshylt eaaimrkikk nklsraiflm qkvaqrfpke lttssqrqll
      901 eealtlveqv eaeqsalyhs lkeamsskkk rktpppplll srshcsmtfk papftsdvqv
      961 swysifgsva egsnmkvrln hnkllntgee ipadgtslfe iqglepneky ifavaayssd
     1021 gkligdaige mtkpilaypp lsattvrayl tqvayqtgny klaresfspm wdyfvansfp
     1081 lpakaavisa rndltisenr lcfeavsqts pitlhlflrn lfaicdinvm egglfcdsis
     1141 snemlykeqv srlaecermt vaielsnwln danytlqsvv qcygllapii yhkissvpva
     1201 qilikclavl qeipsatlqr retgcyesiq hmiacasfyt akvlrlwkey elavivvnyg
     1261 kklldssptt spclseamkt eetntkkkvk ttsaktshla avekakenls alelnllrlt
     1321 epacgseltg qedslflypv iscwtsdsay qevmkfketp rfleffvkll hkilneemfq
     1381 cvlewagdve iylkrrndhi vygistqetg sstlpesidk rntgdtefqk isslkkpkas
     1441 tskkpgkeas slnrkgqslr qylmkhpnim tspeaerxmk iklqkvarqt lvvllkpivs
     1501 nylnqkmfhq tcleempwrs qmniylaish ynlfrkelee qynigicgsq hldsynildp
     1561 eifslnnsgt vvvreaagnn mrtptpsgik ksgmtenqtc tdrysedsie lrgtdtprtr
     1621 etnnteipis hspnecnqll sntvllehft kiflhirrav vlahrgghwt llqnacrelw
     1681 nfteelqlia dhshshvdaf pitrdflrnt iwlpfylasd miidmitelq asrslkivdp
     1741 egdfcipscl ggindenggs nlhpqspldd vnivdlkwic nlilktiell yqmkkwealv
     1801 hiavqfnvft heryteqvsp llvyaqrqll eriqqftgpe shqshflkyl sdtarkmscr
     1861 syigqklqlp vahssselif pgfcpemknd ytdcsqekal ayvpldvndt lkcfrdtlqk
     1921 skyhsralrh srkllslfla htqenaggvi gnrissnrrl efnvgadlif lptpqdlsqe
     1981 efnfsnmves kpipqsqlsi iissyektig vlemnsqrdl kvqalhelgn lhfyagnkra
     2041 afkywcqald etlniadtln nwqelgfpkd atdcfvagrs tdisqkflsq agvwgclhaa
     2101 vlvakiaqyi ttskmrlrtk yccfsailfk slfraslphp tsdydfaqye tdmlipgidl
     2161 fsdryranic tvvaslnflm felhcakqnl iilplftlyq yfvseickdp vkciegrilk
     2221 ikvltdigff teafhelsll ncgeripwki pagyrkiepm kalqkfdsse sllsltnlqv
     2281 ledtfnwslp ltmvplcskr iinkltlakm hliiclsati nnmpekvekh vysvdnknvk
     2341 epsgitasnv kvdavknsrq qeqrgtivrl ihckdelnma mlkgillmea eeslshlvqn
     2401 iqdkydgdis qcfaedlesl iearlqlaai sqqrhhaals valafstirl lqdakifrme
     2461 vthfqeekde wecldcnved vrlthsviar ehmnvrlwlr crtmlvtali rqiygagdme
     2521 enivaerrsv ikeaileaea fgdietqaem mvqaalldlq ekcpvtgikl lleniisllq
     2581 edtfisppas ltlvksmlll adilavetae dsehwsstve plnllilahe ltikaffvyg
     2641 qpierqiedn tltclvlptk niylphintl aqvkmrigci laekvactpa rrdplqwlca
     2701 lkhlesalkl craaatkqld meaellfqig kverqiteag nnksfqavet lseaiklsqq
     2761 hdqkfelirr syleiallyl hfatndegvs akdkmvpsks nmspgelsst eealksedyk
     2821 vrawiavraa tqvseaaias qlligmqsvk ehsmkdemrq kipefasmdl lasyrdflsd
     2881 gynvvfdnpk asstkktqmv ddkqsqsegt eslattasqk ketitwihli hyhsflrrly
     2941 nmnilvaapd sgpgsfsard grlssvfdtg ivlhiaemhs flkkylpgys mcsvenfpee
     3001 lrdvelplnr aadsskmsve vtgiaskmsr vrtaslvsli teadsqmesr aanasnkein
     3061 iqwyipslak psddtetkvl llyayntkpv kinniktfss msmfsgylwi plariislqk
     3121 klsnlkqqve nlmqnsesls aaseptsfle qgeslkknps ekpkmnvakv hldekteema
     3181 krclsevkal lsavpalslp lteipfeitl qsiaslgdmf dpasgciite eslfnwiisl
     3241 fh
//
LOCUS       XP_053923540            1212 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphorylase b kinase regulatory subunit alpha, liver isoform
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053923540
VERSION     XP_053923540.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067565.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1212
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1212
                     /product="phosphorylase b kinase regulatory subunit alpha,
                     liver isoform isoform X1"
                     /calculated_mol_wt=135882
     Region          8..>439
                     /region_name="Glyco_hydro_15"
                     /note="Glycosyl hydrolases family 15; pfam00723"
                     /db_xref="CDD:395586"
     Region          <791..908
                     /region_name="Bac_rhamnosid6H"
                     /note="Bacterial alpha-L-rhamnosidase 6 hairpin
                     glycosidase domain; cl46875"
                     /db_xref="CDD:481215"
     Region          919..>1123
                     /region_name="KPBB_C"
                     /note="Phosphorylase b kinase C-terminal domain;
                     pfam19292"
                     /db_xref="CDD:437124"
     CDS             1..1212
                     /gene="PHKA2"
                     /coded_by="XM_054067565.1:61..3699"
                     /db_xref="GeneID:104063387"
ORIGIN      
        1 mrsrsnsgvr ldgyarlvqr tilchqnpvt gllsagtdhk dawvrdniys ilavwglgma
       61 yrknadrded kakayeleqn vvklmrgllq cmmrqvdkve kfkhtqstkd clhakynsat
      121 catvvgddqw ghlqvdatsl yllflaqmta sglriiftld evtfiqnlvf yieaaykvad
      181 ygiwergdkt nqgipelnas svgmakaale aideldlfga hgghksvihv lpdevehcqs
      241 ilysmlpras tskeidagll siisypafav edlnlvnvtk seiisklqgr ygccrflrdg
      301 yktpredpsr lhydpaelkl feniecewpv fwtyflidgv fnedkvqvee yrealegili
      361 rekngivlmp elyavpsekv deeyenphsv dripvgklph lwgqslyils cllaegflaa
      421 geidplnrrf stgfkpdvvv qvtvlaesnq iknllqdhgv nvqsiadihp lrvqparils
      481 nlytmlgrnk nmklsgrphr higvlgtskl yvirnqifaf tpqftdqhhf ylaldnqmiv
      541 emlktelayl tscwrmtgrp tltfpithtm lvddgtnihp avlacirkle dgyfggarvk
      601 igklsefltt sfhthlsfld pdcdlklfdd pnegrnspds eyggypadfc ekesqdeldq
      661 yindvlqsta lksylpptsk tanqppvfss shstkeilsi maktkglevp vlnthrksln
      721 lvdnphffdt kdcenvlhlp kdahgdldcr rlveqlkecp tlhdqadily ilhilkgadw
      781 dteldgqcgv tvhcllnely rkaglnqewg liryisgilk krvevlaeac tdllshhkql
      841 tvglppepre kiittplppe eltdliyeas gqdisiavlt qeiitylamy vrsqpslfve
      901 mlrlriglii qvmatelars lkcsgeease slmnlspfdm knllhhilsg kefgverslr
      961 pvdssssspa isihemghsg atktersgit klksemkqff reghsmsssm fastrgstps
     1021 sptstsstvs tgdtswgdrk gqwlrrrrld gainrvpvgf yekvwkilqk chglsidgyv
     1081 lpssttremt pceikfavhv esvlnhvpqp eyrqllveai lvltflsdie vnsiggiihv
     1141 drivhvandl flqelksfga tgsilekdvt tgichffyds apsgaygtmt yltkaiiiyl
     1201 hdflpstgca mq
//
LOCUS       XP_053923626            1196 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphorylase b kinase regulatory subunit alpha, liver isoform
            isoform X2 [Cuculus canorus].
ACCESSION   XP_053923626
VERSION     XP_053923626.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067651.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1196
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1196
                     /product="phosphorylase b kinase regulatory subunit alpha,
                     liver isoform isoform X2"
                     /calculated_mol_wt=134091
     Region          8..>439
                     /region_name="Glyco_hydro_15"
                     /note="Glycosyl hydrolases family 15; pfam00723"
                     /db_xref="CDD:395586"
     Region          <791..908
                     /region_name="Bac_rhamnosid6H"
                     /note="Bacterial alpha-L-rhamnosidase 6 hairpin
                     glycosidase domain; cl46875"
                     /db_xref="CDD:481215"
     Region          919..>1107
                     /region_name="KPBB_C"
                     /note="Phosphorylase b kinase C-terminal domain;
                     pfam19292"
                     /db_xref="CDD:437124"
     CDS             1..1196
                     /gene="PHKA2"
                     /coded_by="XM_054067651.1:61..3651"
                     /db_xref="GeneID:104063387"
ORIGIN      
        1 mrsrsnsgvr ldgyarlvqr tilchqnpvt gllsagtdhk dawvrdniys ilavwglgma
       61 yrknadrded kakayeleqn vvklmrgllq cmmrqvdkve kfkhtqstkd clhakynsat
      121 catvvgddqw ghlqvdatsl yllflaqmta sglriiftld evtfiqnlvf yieaaykvad
      181 ygiwergdkt nqgipelnas svgmakaale aideldlfga hgghksvihv lpdevehcqs
      241 ilysmlpras tskeidagll siisypafav edlnlvnvtk seiisklqgr ygccrflrdg
      301 yktpredpsr lhydpaelkl feniecewpv fwtyflidgv fnedkvqvee yrealegili
      361 rekngivlmp elyavpsekv deeyenphsv dripvgklph lwgqslyils cllaegflaa
      421 geidplnrrf stgfkpdvvv qvtvlaesnq iknllqdhgv nvqsiadihp lrvqparils
      481 nlytmlgrnk nmklsgrphr higvlgtskl yvirnqifaf tpqftdqhhf ylaldnqmiv
      541 emlktelayl tscwrmtgrp tltfpithtm lvddgtnihp avlacirkle dgyfggarvk
      601 igklsefltt sfhthlsfld pdcdlklfdd pnegrnspds eyggypadfc ekesqdeldq
      661 yindvlqsta lksylpptsk tanqppvfss shstkeilsi maktkglevp vlnthrksln
      721 lvdnphffdt kdcenvlhlp kdahgdldcr rlveqlkecp tlhdqadily ilhilkgadw
      781 dteldgqcgv tvhcllnely rkaglnqewg liryisgilk krvevlaeac tdllshhkql
      841 tvglppepre kiittplppe eltdliyeas gqdisiavlt qeiitylamy vrsqpslfve
      901 mlrlriglii qvmatelars lkcsgeease slmnlspfdm knllhhilsg kefgverslr
      961 pvdssssspa isihemghsg atktersgit klksemkqrg stpssptsts stvstgdtsw
     1021 gdrkgqwlrr rrldgainrv pvgfyekvwk ilqkchglsi dgyvlpsstt remtpceikf
     1081 avhvesvlnh vpqpeyrqll veailvltfl sdievnsigg iihvdrivhv andlflqelk
     1141 sfgatgsile kdvttgichf fydsapsgay gtmtyltkai iiylhdflps tgcamq
//
LOCUS       XP_053923751             670 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein phosphatase with EF-hands 1 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053923751
VERSION     XP_053923751.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067776.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..670
                     /product="serine/threonine-protein phosphatase with
                     EF-hands 1 isoform X1"
                     /calculated_mol_wt=76747
     Region          122..475
                     /region_name="MPP_RdgC"
                     /note="Drosophila melanogaster RdgC and related proteins,
                     metallophosphatase domain; cd07420"
                     /db_xref="CDD:277364"
     Site            order(179,181,208,212,240..241,292,384,426)
                     /site_type="active"
                     /db_xref="CDD:277364"
     Site            order(179,181,208,240,292,426)
                     /site_type="metal-binding"
                     /note="metal binding site [ion binding]"
                     /db_xref="CDD:277364"
     Region          507..663
                     /region_name="FRQ1"
                     /note="Ca2+-binding protein, EF-hand superfamily [Signal
                     transduction mechanisms]; COG5126"
                     /db_xref="CDD:444056"
     CDS             1..670
                     /gene="PPEF1"
                     /coded_by="XM_054067776.1:527..2539"
                     /db_xref="GeneID:104063412"
ORIGIN      
        1 mgsiigtmgc tssvadrrse nviraailiq nwyrftmarl emrrryslsi fqsieyadeq
       61 dqlqlsnfft fmldycthpd tvshlftsps vsqvvdeglc ltefekkihv pdsyygprls
      121 fpltvedana llhafrneql lharyvlqll cetrrvlkem pnithlstsy skditvcgdl
      181 hgnlddllli fyknglpseq nryvfngdfv drgknsmeil iilfaflliy pndlhlnrgn
      241 hedyimnlry gftkevskky kdhgkqilcl lqdvfswlpl atiidskvli lhggisdttd
      301 ldflnalern klkslmrppk svrnrqdpvk eritttkpsk hianqnvagk pqhvsssgst
      361 elsgsnlpse pslkewkqil dilwsdprsq kgctpnkcrg ggcyfgpdvt aklferynlk
      421 mlirshefkp egyeishdgk vitifsasny yeegsnrgay iklnpelipr fvqyqvskyt
      481 rrqnlrervg tiessalksl rekiyarrse ltsafaeydv ngtgkisvnd waaamesvlq
      541 lglpwrmlrp qlahanadge vdfmscfydl kidqpikevq palaetlcry rkdleiifnv
      601 idkdhsglis leefgqtwkl fmshlgidvc desldklvlh idynkdghid fnefleafhv
      661 vhrlekkans
//
LOCUS       XP_053923829             634 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein phosphatase with EF-hands 1 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053923829
VERSION     XP_053923829.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067854.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..634
                     /product="serine/threonine-protein phosphatase with
                     EF-hands 1 isoform X2"
                     /calculated_mol_wt=72746
     Region          86..439
                     /region_name="MPP_RdgC"
                     /note="Drosophila melanogaster RdgC and related proteins,
                     metallophosphatase domain; cd07420"
                     /db_xref="CDD:277364"
     Site            order(143,145,172,176,204..205,256,348,390)
                     /site_type="active"
                     /db_xref="CDD:277364"
     Site            order(143,145,172,204,256,390)
                     /site_type="metal-binding"
                     /note="metal binding site [ion binding]"
                     /db_xref="CDD:277364"
     Region          471..627
                     /region_name="FRQ1"
                     /note="Ca2+-binding protein, EF-hand superfamily [Signal
                     transduction mechanisms]; COG5126"
                     /db_xref="CDD:444056"
     CDS             1..634
                     /gene="PPEF1"
                     /coded_by="XM_054067854.1:456..2360"
                     /db_xref="GeneID:104063412"
ORIGIN      
        1 marlemrrry slsifqsiey adeqdqlqls nfftfmldyc thpdtvshlf tspsvsqvvd
       61 eglcltefek kihvpdsyyg prlsfpltve danallhafr neqllharyv lqllcetrrv
      121 lkempnithl stsyskditv cgdlhgnldd lllifykngl pseqnryvfn gdfvdrgkns
      181 meiliilfaf lliypndlhl nrgnhedyim nlrygftkev skkykdhgkq ilcllqdvfs
      241 wlplatiids kvlilhggis dttdldflna lernklkslm rppksvrnrq dpvkerittt
      301 kpskhianqn vagkpqhvss sgstelsgsn lpsepslkew kqildilwsd prsqkgctpn
      361 kcrgggcyfg pdvtaklfer ynlkmlirsh efkpegyeis hdgkvitifs asnyyeegsn
      421 rgayiklnpe liprfvqyqv skytrrqnlr ervgtiessa lkslrekiya rrseltsafa
      481 eydvngtgki svndwaaame svlqlglpwr mlrpqlahan adgevdfmsc fydlkidqpi
      541 kevqpalaet lcryrkdlei ifnvidkdhs glisleefgq twklfmshlg idvcdesldk
      601 lvlhidynkd ghidfnefle afhvvhrlek kans
//
LOCUS       XP_053924443             577 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: dynein regulatory complex subunit 6 [Cuculus
            canorus].
ACCESSION   XP_053924443
VERSION     XP_053924443.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068468.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 3% of CDS bases
            frameshifts          :: corrected 2 indels
            internal stop codons :: corrected 4 genomic stop codons
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..577
                     /product="LOW QUALITY PROTEIN: dynein regulatory complex
                     subunit 6"
                     /calculated_mol_wt=63863
     Region          139..157
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          156..322
                     /region_name="AMN1"
                     /note="Antagonist of mitotic exit network protein 1;
                     cd09293"
                     /db_xref="CDD:187754"
     Region          164..191
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          192..217
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          218..267
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          268..293
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          294..318
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          319..346
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          347..372
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          373..392
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          408..>542
                     /region_name="AMN1"
                     /note="Antagonist of mitotic exit network protein 1;
                     cd09293"
                     /db_xref="CDD:187754"
     Region          422..458
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          448..473
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          459..499
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          500..525
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     CDS             1..577
                     /gene="FBXL13"
                     /coded_by="XM_054068468.1:145..1878"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 1 base in 1 codon; substituted 4 bases at 4
                     genomic stop codons"
                     /db_xref="GeneID:104061753"
ORIGIN      
        1 mteelcakar dfysrnlmkp clggxikysl ltknkrkeak hkmglavahy nvkxlrliid
       61 kwsmxvkihk ermtcvlsat kslkqvawhv sgkrlakesr kgcfvsndlt lrhktshlpe
      121 kallqdesmr lisqgcrall ylnlsyrdii ngtlxllsss fpnlqslnla hcikftdkgl
      181 lylgsgkgch elicldlsgc iqisvhgfrn iangcsriqd llmnkmpalt dgrtqglvek
      241 wqqiisvvfl nsphlsdtts kelagcklvk vsiegsnqit dxslklmskc cpyirhihta
      301 dcqkitdagl kmisplknil vlnvadyiri sdegvrqlvq spsgtklrem nlincngvtn
      361 ysiteiaqrc hestylnlcy cenmtdvgie tlgnmlslis tdisgvsisd tvllecghhg
      421 kikelsvsec knitdseiqe fckgtkyley chvfccpqlm netvkakafh cytltpfnia
      481 gcpkmtdtci ehlaadchsl sflavsgcid ltdkalkylw kgckqlqilk mlycrnitkh
      541 avlkytakle kqehdadpps wlgcdqdgni ltfatra
//
LOCUS       XP_053924546             915 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 146, partial [Cuculus
            canorus].
ACCESSION   XP_053924546
VERSION     XP_053924546.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068571.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: incomplete on the amino end.
FEATURES             Location/Qualifiers
     source          1..915
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         <1..915
                     /product="coiled-coil domain-containing protein 146"
     Region          <29..>327
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          53..737
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..915
                     /gene="CCDC146"
                     /coded_by="XM_054068571.1:<1..2748"
                     /db_xref="GeneID:104059685"
ORIGIN      
        1 clqekhisvs ipdselvylf sagkitdtrv aelkgkytll hktvislqes eiqllqeakr
       61 lsveleqqqh elekaeqfpe esssevsqir qqllscqney kaikereyev qfkleclqee
      121 ksflesecer ipkqreadkk ikqlkenydd lckeviqrka einalkeevl sqqnliltdk
      181 keveellekq ddlkgelvkv lrvpahhrke tekinqekid eekrkdalnd kieelndtlk
      241 aiekrteeil qerqnvmeel ngkkkllesk eqenitltks leisrekesa illdreilqe
      301 ninkcvlekk rqydiliyqe aekarelkhl kkvelqlnvi ndsleqdksq hkklileaea
      361 ipksnrelle rrqelqkeve makrslaeqe mlsdmdarmi eeciaeedrl fkeqekcrne
      421 lsrlahltsr kveekeqkcr dvqkiqiqlq ncikkikrkd leireykrrt reiqkeiqgf
      481 akmyeviqne rnkcinlvra aqqkaskikn rvklvenqie slrntvltke rklqkqrlkn
      541 tnnvvikdsl ksdyckivei ihemqsrkkq lcldlerltn tvtrieeeie elhkkyerai
      601 qqknesglml rnreeelcil yekvniqeml crngaiemev mnekirflkl kvaekkrqik
      661 safkalpekn aleaqlvvlq iqyskckeri kqmeaifadp tnetrkrelg gkdlsppell
      721 kkieqlevel aqkekkllet dflyeyvcrl tdsiramved gkqdklllak rtnnlqkkik
      781 drtqkmmalv aelsmkkalv iklqqemrnk eqflmtvssr idqglplpke tenewlkvlr
      841 nekmrkeaae arakraaeee qaavpgcrhm iacipgdeys lpllqacgtl aplkprepgs
      901 ntrhftkpvv kptei
//
LOCUS       XP_053924775            2463 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: collagen alpha-1(VII) chain-like [Cuculus
            canorus].
ACCESSION   XP_053924775
VERSION     XP_053924775.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068800.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2463
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2463
                     /product="LOW QUALITY PROTEIN: collagen alpha-1(VII)
                     chain-like"
                     /calculated_mol_wt=258589
     Region          32..197
                     /region_name="vWFA"
                     /note="Von Willebrand factor type A (vWA) domain was
                     originally found in the blood coagulation protein von
                     Willebrand factor (vWF). Typically, the vWA domain is made
                     up of approximately 200 amino acid residues folded into a
                     classic a/b para-rossmann type of...; cl00057"
                     /db_xref="CDD:469594"
     Site            order(39,113,145)
                     /site_type="other"
                     /note="metal ion-dependent adhesion site (MIDAS)"
                     /db_xref="CDD:238759"
     Region          234..316
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          <295..634
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          602..689
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(679..680,682..683)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          701..777
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          788..867
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(863..864,866..867)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          948..1112
                     /region_name="vWFA"
                     /note="Von Willebrand factor type A (vWA) domain was
                     originally found in the blood coagulation protein von
                     Willebrand factor (vWF). Typically, the vWA domain is made
                     up of approximately 200 amino acid residues folded into a
                     classic a/b para-rossmann type of...; cl00057"
                     /db_xref="CDD:469594"
     Site            order(955,1027,1060)
                     /site_type="other"
                     /note="metal ion-dependent adhesion site (MIDAS)"
                     /db_xref="CDD:238759"
     Region          <1289..>1515
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <1853..>2109
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <2022..>2261
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <2231..>2301
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          2405..2455
                     /region_name="Kunitz_collagen_alpha1_VII"
                     /note="Kunitz-type domain from the alpha1 chain of type
                     VII collagen, and similar proteins; cd22627"
                     /db_xref="CDD:438670"
     CDS             1..2463
                     /gene="LOC128852369"
                     /coded_by="XM_054068800.1:159..7550"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /db_xref="GeneID:128852369"
ORIGIN      
        1 mkmyaqifal lvavtqyrav aiheacrtae vadilfvvgq skgtrressh lvkdfigsma
       61 rsfenvvmgk ggirlavaly rekprmsiel tdyvtikeml vaiqnlslkg gslktgaalg
      121 faahvmsrld vlredaakvv vlitdgkssd lfedeaqvlq dggvtvfavg ikdadkneln
      181 kiasepteeh alyvedfhll hnvapklsrr lcftaseppr pikqtvqaek iigprnlhvs
      241 ehshsslrlt wmpatgrvmg yrvhlhpllp sghpvsedqr qimvdgdkst vlltdlkpnt
      301 kyvftvraiy adahgesati kgkttpvppi tnfrvieegl fslkvawtpp lgkpegykiy
      361 ipranrpgmt yeqvlrgdis shvldnleed reysisiyai ypegssqpva avgrtlkflp
      421 veivflqnet tdtlqarwsp vqgatgyrlt wssaegsiqd vnlsndysny liqglqpgte
      481 ytitinpifg dvegpvvsrk attvasstvq mlkvsdisin salvswdsva gatgyrmaws
      541 ptpeffgkdr prqlalnrst ttyqlhnlsh dteyvislyv lfgsvegpgi tasartsplg
      601 yvsnfkvtsy tstslslaws amaaatkfkv twspmgagke kqvaktqyla srvlacridh
      661 llpntlykvs vraifnkteg pevtlthyta spadpnptqi vqdlritdag vnslklswkr
      721 lpgvthykis wvpvngglet sqvvaaetvs ftipklkest tytirlsaii geqegspmll
      781 taktldlpkv teftvqeaae tsilltwmtv pgastylltw hlssatdvsq emlpaasrsy
      841 rvtglrskkk ylfsirpvfg dtegpettfl gqtvgphids pepvapvtst gldtmrspsv
      901 spsnvgttpl platttklpp tpetprstta esaqhttlpg picgkfkadi gflvdesssi
      961 gqsnfnkvkd flfwivsyfp kigpegtqva vaqyseepra afyfshhrdr nsvlkaikel
     1021 syaggntktg raiaymlkev fqslrgmrpd fphvlvlmtd grsqddvllp arvlhalgir
     1081 viavgvagad pielnsilmq qnlqnvfyvs tfddfpqilq elievicsdp qpsgdqlpsv
     1141 evtrheadkq lpfndteskp hipapssaeq hsqkeeetcg pwclnsfrgs sahgrndpfs
     1201 fstkgekger glpgkdgipg lpgrpgrtgp pgppglvgep gyvlggvevi pgqngqpgpp
     1261 gpkgqpgvpg vagppglpgp qgppgisikg epgmrgprgr nglkgdrggv gepgnkgqgg
     1321 vkgekglpgp pgqkgdqgkp gfpgapavgv lgppgkkgvr gdtgptgalg pkgskgiqgd
     1381 kgekgspgfg vpgqpglkgd pgdrgnvgls gkpgqkgdig pkgekgepgl pgkkgetglr
     1441 gkdgepgekg tsgtkgeaga pgepgergir gppglpgrpg eqglkgdpgq pgkdgitgek
     1501 gdkgesgepg lpgapgsims slentinlkg skgdrgqdgl kgergppgpk gepgppgkgv
     1561 emkdlerlfe ahgiklallk dlsnallreg ldglvrqlgd sktsknsrtk qdslvvntsh
     1621 dalastkite aqsleeeaqf svptsgglse gpstggpepe yqplrkfpes lekpseerrn
     1681 etdsrgtnts vssslavspp hseddlqgnq svelleslee rmegqpqqdt shenvnlddg
     1741 safprrvrhk rsaehetqtv ktlfhhgvfr lacvqeqshq hdpggssdps llapsqvhpp
     1801 gapgarkals gltaypgphy lrrikkeeag psdppssgqk gemgapgarg nkgekgqpge
     1861 mgkpgekgtk gdkgengqkg epgigfrgpv gqagppgykg epgapgppga qgiqgirgnt
     1921 gipgsqgdrg apglpgtpgq kgergkrgrn gvagpagpsg spgkegipgt pgpkgkkgea
     1981 gigaagprgp rglpgprgde gimgvrgptg tmglkgfpgv kgkrgdrgll gpkgergept
     2041 tilgpqgykg skgdpgergl pgfdgdkgek gedgpvgekg vkgeagskgv mglfgtrgpv
     2101 gqkgepgepg lpgsagtagl dgkngnkgak gdrglqgqkg kpgekgdpgt igetgqkgak
     2161 glrglpgrig apgaegikgd tgspgkpgip gadgpygpkg epgasgddga vgipggkgek
     2221 gakgvpglgg fkgqmgwpgk pgvagpdgpq gpqgkpgpqg prgrrgrpql clkgppgmdg
     2281 qkgetgengp agqkgekgdp glseeevkev vrsemkgrcd cggleaaefn relqgyfqpq
     2341 ehtriddrsq eemlnttqsv ttlvtsvkpf mephslitaa praqqitgss qhkdqeahsq
     2401 lpasclqpmd egscqhytll wyyhaeakac rpfifggcrg nsnrfetkwk cerrcktsag
     2461 rgr
//
LOCUS       XP_053924877             346 aa            linear   VRT 09-MAR-2023
DEFINITION  acrosin [Cuculus canorus].
ACCESSION   XP_053924877
VERSION     XP_053924877.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068902.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..346
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..346
                     /product="acrosin"
                     /calculated_mol_wt=38524
     Region          41..277
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            42
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(86,135,232)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(226,253,255)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..346
                     /gene="LOC104061449"
                     /coded_by="XM_054068902.1:1..1041"
                     /db_xref="GeneID:104061449"
ORIGIN      
        1 mkmlfffvll alcqpvqgsw etckgscglr pldysgygsv rvvggrdaqp gawpwivsvq
       61 tvrathishv cggslihpkw vltaahcfvd tqnvpawrvv agttsltdmg petqlryvrq
      121 ivihedydnt tqandislme lyepfrcgpy vqlacvpdfs lrlwelrncy vsgwgvtmar
      181 sgglppalqe akvplidlqv cnssgwyrgd ihhhnlcagy pqggidtcqg dsggplvcqd
      241 phadhfwlmg vtswgkgcar arrpgvytst rhfrdwiltq mmrrslraat atqrtwshil
      301 ttsnsvetpq ttepshfssr lhslnklvef fttlqellqv lksrst
//
LOCUS       XP_053924971             267 aa            linear   VRT 09-MAR-2023
DEFINITION  C-type lectin-like, partial [Cuculus canorus].
ACCESSION   XP_053924971
VERSION     XP_053924971.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068996.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 23% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the amino end.
FEATURES             Location/Qualifiers
     source          1..267
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         <1..267
                     /product="C-type lectin-like"
     Region          103..228
                     /region_name="CLECT"
                     /note="C-type lectin (CTL)/C-type lectin-like (CTLD)
                     domain; cl02432"
                     /db_xref="CDD:470576"
     Site            order(202,206,208,212,214..217,220..222)
                     /site_type="other"
                     /note="ligand binding surface [chemical binding]"
                     /db_xref="CDD:153064"
     CDS             1..267
                     /gene="LOC128852395"
                     /coded_by="XM_054068996.1:<1..804"
                     /db_xref="GeneID:128852395"
ORIGIN      
        1 kagdtgrgdr qtdrrtlrdp aasthvthpe tprpparels qqdgcwahts tparlpsppg
       61 lpgvdslpad rileeragts ilaaapdvqp yvlqeppvra hicphnwihf rghcygyftq
      121 rktqaeaqee csrygptgtl asihtegssv vlgeyvdsqq dranvwiglk deehtgtwrw
      181 sdssvldylh wdwgqpvqwr nwycvvlgqn svlhnyscqe qfpflcqyqv vrggcpsplc
      241 shgvtptprt pqsfprppap agnkawd
//
LOCUS       XP_053925175             370 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: choline/ethanolamine kinase [Cuculus canorus].
ACCESSION   XP_053925175
VERSION     XP_053925175.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069200.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 3% of CDS bases
            frameshifts          :: corrected 2 indels
            internal stop codons :: corrected 1 genomic stop codons
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..370
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..370
                     /product="LOW QUALITY PROTEIN: choline/ethanolamine
                     kinase"
                     /calculated_mol_wt=42306
     Region          55..367
                     /region_name="ChoK_euk"
                     /note="Euykaryotic Choline Kinase; cd05156"
                     /db_xref="CDD:270705"
     Site            order(55,57,77,79,108,120..123,125..127,220,222,224..225,
                     227,243..244,247,263,268,334,337)
                     /site_type="active"
                     /db_xref="CDD:270705"
     Site            order(55,57,77,79,108,120..123,125..127,224,227,243..244)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270705"
     Site            order(92,95..96,99..100,103..104,110..113,155..156,
                     158..159)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:270705"
     Site            order(220,222,225,247,263,268,334,337)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:270705"
     CDS             1..370
                     /gene="CHKB"
                     /coded_by="XM_054069200.1:1..1113"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 2 codons;
                     substituted 1 base at 1 genomic stop codon"
                     /db_xref="GeneID:104057975"
ORIGIN      
        1 maagpggcga gaegavpaat rlqayawcre flagswklig ptssrrvpaa gasgnllfkc
       61 alpehilsvg deprqvllrv laxcpqgvds lvlesvmfai laeralgprl ygvfpqgrle
      121 qyipsrrlrt edlwdpdisk eiavkmsrfh gmvmpfnkep kwlfgtmewy lkqiseltfp
      181 eeeqrkkfhh lkaynleeem knlrelleat pspvvfchnd vqegnillla ghedsssdkl
      241 mlidfeyssy nyrgfdignh fcewvysysh dcwpffkasp enypswqqql hfirhylsed
      301 sgrredtthe eqarieeeml teinrfalas hffwglwsil qakistikfg yldyaqsrfe
      361 ayfqhkaqls
//
LOCUS       XP_053925270             159 aa            linear   VRT 09-MAR-2023
DEFINITION  C-type Lectin CRL-like [Cuculus canorus].
ACCESSION   XP_053925270
VERSION     XP_053925270.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069295.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 10% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..159
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..159
                     /product="C-type Lectin CRL-like"
                     /calculated_mol_wt=18608
     Region          29..157
                     /region_name="CLECT"
                     /note="C-type lectin (CTL)/C-type lectin-like (CTLD)
                     domain; cl02432"
                     /db_xref="CDD:470576"
     Site            order(128,132,134,141,143..146,149..151)
                     /site_type="other"
                     /note="ligand binding surface [chemical binding]"
                     /db_xref="CDD:153064"
     CDS             1..159
                     /gene="LOC128852462"
                     /coded_by="XM_054069295.1:1..480"
                     /db_xref="GeneID:128852462"
ORIGIN      
        1 mgkggekwge lrdvqpyvlq eppvrahicp hnwihfrghc ygyftqrktq aeaqeecsry
       61 gptgtlasih tegssvvlge yvasqqdrdn vwiglkdeeh tgtwrwsdss vldylhwdwg
      121 qpvqwrnwyc vvlgqnsafq ywrnyscqeq fpflcqyqv
//
LOCUS       XP_053925397             284 aa            linear   VRT 09-MAR-2023
DEFINITION  thymidine phosphorylase [Cuculus canorus].
ACCESSION   XP_053925397
VERSION     XP_053925397.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069422.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..284
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..284
                     /product="thymidine phosphorylase"
                     /calculated_mol_wt=29747
     Region          7..>280
                     /region_name="DeoA"
                     /note="Thymidine phosphorylase [Nucleotide transport and
                     metabolism]; COG0213"
                     /db_xref="CDD:439983"
     CDS             1..284
                     /gene="TYMP"
                     /coded_by="XM_054069422.1:224..1078"
                     /db_xref="GeneID:128852468"
ORIGIN      
        1 matapwmvel irkkrdgeel reeemerfih gvltgtvreg qigalllscr lrglsraeaa
       61 alsramaaps ralqwprgwt aldkhstggv gdkvslvlgp aiaalgakvp mvsgrslght
      121 ggtldkleai pgfrvhlsap emqrvlervg ccivaqseel apadrvlyel rdatatvdcd
      181 gliissilsk kaveglsalv ldvkfgraal spsqesardl asamvevgaq lglraaavls
      241 rmdaplgrcv gdaievleai eclrgggppd lrelvttlgg ktgs
//
LOCUS       XP_053925528             489 aa            linear   VRT 09-MAR-2023
DEFINITION  condensin-2 complex subunit H2, partial [Cuculus canorus].
ACCESSION   XP_053925528
VERSION     XP_053925528.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069553.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: incomplete on the carboxy end.
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..>489
                     /product="condensin-2 complex subunit H2"
     Region          6..121
                     /region_name="CNDH2_N"
                     /note="Condensin II complex subunit CAP-H2 or CNDH2,
                     N-terminal; pfam06278"
                     /db_xref="CDD:461866"
     Region          145..249
                     /region_name="CNDH2_M"
                     /note="Condensin II complex subunit CAP-H2 or CNDH2, mid
                     domain; pfam16869"
                     /db_xref="CDD:435617"
     Region          298..>489
                     /region_name="CNDH2_C"
                     /note="Condensin II complex subunit CAP-H2 or CNDH2,
                     C-term; pfam16858"
                     /db_xref="CDD:465283"
     CDS             1..489
                     /gene="NCAPH2"
                     /coded_by="XM_054069553.1:868..>2334"
                     /db_xref="GeneID:104063212"
ORIGIN      
        1 meevesrflh llqpirdltk nwevdvaaql geyleeldhi cisfdngktt mnfieaalli
       61 qgsacvysrk veylyslvyq tldficnkkr ekqpsslgdd gkdtdatfgt eqeeflsldd
      121 igagspanvd mktdhrpnav divpltpmsl vppedaekre nplfsrtgel lasrkdfrmn
      181 tctphatgaf llelaglspt fppeprrprs prtaagahsg vlgrdpvqal sfsedggape
      241 pedddygadi pendvemlpa apecieaqki apkekgiilr krfptedpna hikemldpwq
      301 sldpfadsee kpfkkgrpfl lprgldgvvg gkrkrksprk lqdfvkwfta aytpvadsrk
      361 trrkgptfad lealywqqlr erksraaapw eplrlqesep peeereadge egdadftehe
      421 digaenpeea ggdesarppi rseslgyeel vrrnvelfma esqkyarete lsqhvrrwee
      481 rigpllheq
//
LOCUS       XP_053925663            1818 aa            linear   VRT 09-MAR-2023
DEFINITION  myotubularin-related protein 5 [Cuculus canorus].
ACCESSION   XP_053925663
VERSION     XP_053925663.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069688.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1818
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1818
                     /product="myotubularin-related protein 5"
                     /calculated_mol_wt=203656
     Region          57..226
                     /region_name="DENN"
                     /note="DENN (AEX-3) domain; pfam02141"
                     /db_xref="CDD:460461"
     Region          280..348
                     /region_name="dDENN"
                     /note="Domain always found downstream of DENN domain,
                     found in a variety of signalling proteins; smart00801"
                     /db_xref="CDD:129037"
     Region          458..678
                     /region_name="SBF2"
                     /note="Myotubularin protein; pfam12335"
                     /db_xref="CDD:463536"
     Region          806..924
                     /region_name="PH-like"
                     /note="Pleckstrin homology-like domain; cl17171"
                     /db_xref="CDD:473070"
     Region          1068..1445
                     /region_name="PTP_DSP_cys"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; cl28904"
                     /db_xref="CDD:475123"
     Region          1711..1816
                     /region_name="PH_Sbf1_hMTMR5"
                     /note="Set binding factor 1 (also called Human MTMR5)
                     Pleckstrin Homology (PH) domain; cd01235"
                     /db_xref="CDD:269941"
     CDS             1..1818
                     /gene="SBF1"
                     /coded_by="XM_054069688.1:1..5457"
                     /db_xref="GeneID:104057998"
ORIGIN      
        1 meprergpve gvelplghgs fcggwrsyta prlrsappdl saglnpkrds cpqinslgli
       61 ytiyvdglsv slenvignll tctipitgga qtdaddeapr tislgagdrq llqtplhdsl
      121 pvssssvall frqlgitnvl ylfcaalteh kilflsssyq rltdacrall aiifplkysf
      181 tyvpilpaql levlstptpf iigihsvfqs etqelldvvi adldggtvnv pecvhisllp
      241 epllqqtrea lsmvldpele vadlafppst isasslkmqd keiravflrl faqllqgyrw
      301 clhiirihpe pvirfhkaaf lgqrgltedd fltkvlegma fagfvterga pyrsidlfde
      361 lvayevkrmr aeegnktkil rhikelaekl yknenpypav amqkvqkpte cgplrsprka
      421 fprldegtvq wiidqatakl qaappavkaq kktmvpsgpp idaimerngn alansarrle
      481 vvrncisyvf enkmleakkl fpavlramkg raarncltqe lnlhvqqnra vldhqqfdfi
      541 irmmncclqd ctavdehgia aallplvtaf crklspgitq fayscvqdhv vwtnlqfwea
      601 mfycdvqnhi ralyldaned natteeskeg pqevksalei aseqlrwwpt msrekqqeli
      661 qkeestvfsq aihyanrmsy lllpldttkn rllrssglgd gesvtnsfvt nsiagsvaes
      721 ydtesgfeda essdvanavv rfinrfvdkv ctesgvtneh lkglhvmipd ivqmhietld
      781 avhresrrlp piqkpkllrp nllvgeecvl eglrgfllpd greegaggpl ggppllpaeg
      841 avflttyrii fkgtptdplv geevvvrsfp iasltkekki tlqaqvdpfl qeglqlrsct
      901 fqllkiafde evasesaeif rkhlhklryp qdvrgtfaft vgqwakeamq pkakeknpsl
      961 rtlsknlvkn akrtigrqyv trkkytpppw eqrgghhlpe dheddiavse emdrstltst
     1021 aatstptlrp sekmtithlv eraccrdyqr lglgtlsssl traknepfri stvnrmyaic
     1081 rsypgllivp qsiqdntiqr isrcyrhnrf pvicwrhsrt kavllrsggl hgkgvvglfk
     1141 sqnaptggps ptdstaleqe kylqavinsm physdaggrn tlsgftsahm sssdvsekrq
     1201 pklgslmkqv mggkddgpgt isrggkwgsi raggrmssya lnveigsrla gkdllgahhn
     1261 gsptdgaflr prraalyivg dksqlkgvkp dplqhwevvp ievfdvrqvk gsfkklmkac
     1321 vpgcapaepn vtylraleds ewlaqlhkil qisvlvvell dtgssvlvsl edgwdittqv
     1381 vslvqllsdp yyrtlegfrl lvekewlsfg hrfshrgaqt lagqsgafap iflqfldcvh
     1441 qihlqfpmef efslhylkfl syhyisnrfr tflldsdyer ielgvlyeek gerkpqqmsk
     1501 svwdyierlh kkapiffnfm yapedgevlr pysnisnlkv wdyyteetls egpsydwelt
     1561 qsqadnaeep drhdagapqt krkiiwpcyd nrrrlqpdai sklleelhnl evelgqiper
     1621 wketwdkvka sqrtetrpeg nrtpssllms sglshhrrsl gsylqesgvg stlnlsldsd
     1681 asaastpssg kqsgrrgtaa lysqfqmaes enrsyegsly kkgafmkpwk prwfvldktk
     1741 hqlryydsrm dteckgvidl advesitpgt ptmgapktvd ekaffdlktt krvynfcaqd
     1801 vqlaqqwidr iqsclsda
//
LOCUS       XP_053925771             422 aa            linear   VRT 09-MAR-2023
DEFINITION  acrosin-like [Cuculus canorus].
ACCESSION   XP_053925771
VERSION     XP_053925771.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069796.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 21% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..422
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..422
                     /product="acrosin-like"
                     /calculated_mol_wt=46121
     Region          108..353
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            109
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(153,202,308)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(302,329,331)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..422
                     /gene="LOC128852481"
                     /coded_by="XM_054069796.1:1..1269"
                     /db_xref="GeneID:128852481"
ORIGIN      
        1 mpqpertrst parapqdpet perkrrirlp mrgassaagh agrcssqsdp taigtaalgv
       61 rrkyycimkv lfflfvllal clpvqgswet cetcglrplh sdssvsarvv ggrdaqpgaw
      121 pwivsvqmvf etgavhicgg slihpqwvlt aahcfdkiqn vpawrvvagi nnlahegpea
      181 qvryvrrild hkgynnitma ndialmevye pfqcspyvql acvpdfslrl welrncyvsg
      241 wgdtvaksre mppslqeanm plvlqeaqvp lintqvcnss gwyrgaihsh nvcagypqgg
      301 idtcqgdsgg plvcqdlhad yfwlvgvtsw gkgcararrp gvyastqyfr qwilsqmamp
      361 sleaaaatae shfttgfnpi eapqpvptpa aasptcpfpv dklkaffarl qdllqvlrsg
      421 kg
//
LOCUS       XP_053925892             345 aa            linear   VRT 09-MAR-2023
DEFINITION  acrosin-like [Cuculus canorus].
ACCESSION   XP_053925892
VERSION     XP_053925892.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069917.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..345
                     /product="acrosin-like"
                     /calculated_mol_wt=37849
     Region          40..276
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            41
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(85,134,231)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(225,252,254)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..345
                     /gene="LOC128852499"
                     /coded_by="XM_054069917.1:1..1038"
                     /db_xref="GeneID:128852499"
ORIGIN      
        1 mlffffvlla lclpvqgswe nckgtcglrp svsygygsvr vvggrdaqpg swpgivsvqk
       61 vrethvfhac ggslihpqwv ltaahcfvns qdvpawrvva gttsltdmgp etqisyvrqi
      121 iihddydktt qandialmel yeplqctpyv qlacmpdfsl qlrqlrncyv ggwggttars
      181 gglppslqea kvplidlkvc nssgwyhgdi hphnlcagyp qggidtcqgd sggplvcqdp
      241 hadhfwlvgv tsfgvgcara rrpgvytstr hfrdwvltqi trhsvraana teeawshfpt
      301 tsypvempet tepsyfsscl yalnklldff tqlqeflrvl kggga
//
LOCUS       XP_053926014             347 aa            linear   VRT 09-MAR-2023
DEFINITION  acrosin-like [Cuculus canorus].
ACCESSION   XP_053926014
VERSION     XP_053926014.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070039.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..347
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..347
                     /product="acrosin-like"
                     /calculated_mol_wt=38045
     Region          42..278
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            43
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(87,136,233)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(227,254,256)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..347
                     /gene="LOC128852510"
                     /coded_by="XM_054070039.1:1..1044"
                     /db_xref="GeneID:128852510"
ORIGIN      
        1 mkmlffffvl lalclpvqgs wenckgtcgl rpsvsygygs vrvvggrdaq pgswpgivsv
       61 qkvrethvfh acggslihpq wvltaahcfv nsqdvpawrv vagttsltdm gpetqisyvr
      121 qiiihddydk ttqandialm elyeplqctp yvqlacmpdf slqlrqlrnc yvggwggtta
      181 rsgglppslq eakvplidlr icnssgwyhg dihphnlcag ypqggidtcq gdsggplvcq
      241 dphadhfwlv gvtsfgvgca rarrpgvyts trhfrnwilt qitrhsvraa natehawshi
      301 ptasnpvetp qttepsyfss clyalnkmld fftqlqeflr vlkggga
//
LOCUS       XP_053926116             435 aa            linear   VRT 09-MAR-2023
DEFINITION  ubl carboxyl-terminal hydrolase 18 isoform X1 [Cuculus canorus].
ACCESSION   XP_053926116
VERSION     XP_053926116.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070141.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..435
                     /product="ubl carboxyl-terminal hydrolase 18 isoform X1"
                     /calculated_mol_wt=49191
     Region          59..352
                     /region_name="UCH"
                     /note="Ubiquitin carboxyl-terminal hydrolase; pfam00443"
                     /db_xref="CDD:425685"
     Site            order(63,68,323,341)
                     /site_type="active"
                     /db_xref="CDD:239072"
     CDS             1..435
                     /gene="USP18"
                     /coded_by="XM_054070141.1:459..1766"
                     /db_xref="GeneID:104055891"
ORIGIN      
        1 mgqrsgrqei skrlelalne tmkaeadvqn skeeaeepeg knqritlvfg vadlkngavg
       61 lynvgqtccl nsllqvflmn ihftgilrri tvpplavekr rnvpyqmlll lekmqcgkqk
      121 avspiaftyc lsvhgvklfv qydaaqlflt lwnlikkqmk kldlveelsy lytigvqehl
      181 acqkcsfetk rnssmltlpl plldsnshml ktledclqyf frpeeltden mcfcgqcgrk
      241 tpflqsmklv hlpqtltihl krfcfeksay ihklshylpf pqdldfnail tenqcgadgn
      301 ekagwqyelf avvahsgsts fghycayirs lteckwycfn dsevcqvswd dvkctyghss
      361 lhcqlpgrrk gqsrfknlak gcilflpaaa grrphitptw scspmpgcps rnwgpgryll
      421 elgttlvtqv ipgnc
//
LOCUS       XP_053926187             378 aa            linear   VRT 09-MAR-2023
DEFINITION  ubl carboxyl-terminal hydrolase 18 isoform X2 [Cuculus canorus].
ACCESSION   XP_053926187
VERSION     XP_053926187.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070212.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..378
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..378
                     /product="ubl carboxyl-terminal hydrolase 18 isoform X2"
                     /calculated_mol_wt=43254
     Region          59..372
                     /region_name="UCH"
                     /note="Ubiquitin carboxyl-terminal hydrolase; pfam00443"
                     /db_xref="CDD:425685"
     Site            order(63,68,323,341)
                     /site_type="active"
                     /db_xref="CDD:239072"
     CDS             1..378
                     /gene="USP18"
                     /coded_by="XM_054070212.1:447..1583"
                     /db_xref="GeneID:104055891"
ORIGIN      
        1 mgqrsgrqei skrlelalne tmkaeadvqn skeeaeepeg knqritlvfg vadlkngavg
       61 lynvgqtccl nsllqvflmn ihftgilrri tvpplavekr rnvpyqmlll lekmqcgkqk
      121 avspiaftyc lsvhgvklfv qydaaqlflt lwnlikkqmk kldlveelsy lytigvqehl
      181 acqkcsfetk rnssmltlpl plldsnshml ktledclqyf frpeeltden mcfcgqcgrk
      241 tpflqsmklv hlpqtltihl krfcfeksay ihklshylpf pqdldfnail tenqcgadgn
      301 ekagwqyelf avvahsgsts fghycayirs lteckwycfn dsevcqvswd dvkctyghss
      361 lhwgetayll iymkkrpq
//
LOCUS       XP_053926301             356 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128852539 [Cuculus canorus].
ACCESSION   XP_053926301
VERSION     XP_053926301.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070326.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..356
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..356
                     /product="uncharacterized protein LOC128852539"
                     /calculated_mol_wt=38001
     Region          131..>226
                     /region_name="PBP_sp32"
                     /note="Proacrosin binding protein sp32; pfam07222"
                     /db_xref="CDD:429354"
     CDS             1..356
                     /gene="LOC128852539"
                     /coded_by="XM_054070326.1:757..1827"
                     /db_xref="GeneID:128852539"
ORIGIN      
        1 mlfvgfsepg dslarspmpl qavasphrvp qqrgklpghs rspcclcphs psfllprgvp
       61 vspdnpqvta casaprpltt lfvtsprliq ppsvawppkr terldsgtdm aslacllgll
      121 tllscvtasl ahapgsplsd keyqaffltl wppwraevlc tirqtygcls pgilkmdrle
      181 nhgvvpkgsi csdfpermrf esfcqfahyr cfqgqfyvkr ircpntsthk nlflagqhea
      241 vgsgvkdqss pareapgqas vsppgalles tgllplpptv pspaapaplp nklespaqee
      301 aswkqrlwss iskliswals tenplgsspq rspeagagst pstaqeaaqa aaphgr
//
LOCUS       XP_053926413             315 aa            linear   VRT 09-MAR-2023
DEFINITION  aldo-keto reductase family 1 member B1 [Cuculus canorus].
ACCESSION   XP_053926413
VERSION     XP_053926413.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070438.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..315
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..315
                     /product="aldo-keto reductase family 1 member B1"
                     /calculated_mol_wt=35583
     Region          10..315
                     /region_name="AKR_AKR1B1-19"
                     /note="AKR1B family of aldo-keto reductase (AKR); cd19107"
                     /db_xref="CDD:381333"
     Site            order(18..21,43,47..48,77,79,110..111,113,115,122,
                     159..160,183,209..216,219,228,245,260..265,268,271..272,
                     298..300,303,309..310)
                     /site_type="active"
                     /db_xref="CDD:381333"
     Site            order(43,48,77,110)
                     /site_type="active"
                     /note="catalytic tetrad [active]"
                     /db_xref="CDD:381333"
     CDS             1..315
                     /gene="LOC104064598"
                     /coded_by="XM_054070438.1:52..999"
                     /db_xref="GeneID:104064598"
ORIGIN      
        1 magcvrlsaa gmpllglgtw kappgkvgaa vmaaidagyr hfdcayvyqn ekeigdgiqq
       61 kikegvvkre dlfivsklwc tfhdkplvkg acqktladlk ldyldlylmh wpfgfkagee
      121 lfptddkgms ipsntdflht weameelvda glvkaigisn fnreqteril nkpglkhkpa
      181 nnqfechpyl tqeklikycq skgiavtays plgspdrpwa kpedpslldd pkikeiaakh
      241 nktpaqvlir fhiqrnvivi pksvtpqriv enfkvfdfel tkeematils fnrnwracdm
      301 ttcrthkeyp fhaey
//
LOCUS       XP_053926534             315 aa            linear   VRT 09-MAR-2023
DEFINITION  aldo-keto reductase family 1 member B1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053926534
VERSION     XP_053926534.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070559.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..315
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..315
                     /product="aldo-keto reductase family 1 member B1 isoform
                     X1"
                     /calculated_mol_wt=35549
     Region          10..315
                     /region_name="AKR_AKR1B1-19"
                     /note="AKR1B family of aldo-keto reductase (AKR); cd19107"
                     /db_xref="CDD:381333"
     Site            order(19..22,44,48..49,78,80,111..112,114,116,123,
                     160..161,184,210..217,220,229,245,260..265,268,271..272,
                     298..300,303,309..310)
                     /site_type="active"
                     /db_xref="CDD:381333"
     Site            order(44,49,78,111)
                     /site_type="active"
                     /note="catalytic tetrad [active]"
                     /db_xref="CDD:381333"
     CDS             1..315
                     /gene="LOC104055913"
                     /coded_by="XM_054070559.1:94..1041"
                     /db_xref="GeneID:104055913"
ORIGIN      
        1 matcvqlntg akmpllglgt wkstagkvta avmaaidagy rhfdcayvye nenevgegiq
       61 qkikegvvkr edlfivsklw ctffdkplvk gackktlaal kldyldlyli hwpcgfkage
      121 eifpkddkgm cipsntdilq tweameelvd aglvkaigis nfnheqieri lnktglkykp
      181 annqikchpy ltqeklikyc qskgiavtay splgspdrpw akpedpslld dpkikiaaky
      241 nknpaqvllr fqiqrnvtvi pksvtpqqia enfkvfdfel akeematifs fnrnwraytm
      301 smcknhkdyp fdaey
//
LOCUS       XP_053926608             186 aa            linear   VRT 09-MAR-2023
DEFINITION  aldo-keto reductase family 1 member B1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053926608
VERSION     XP_053926608.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070633.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..186
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..186
                     /product="aldo-keto reductase family 1 member B1 isoform
                     X2"
                     /calculated_mol_wt=21309
     Region          <1..186
                     /region_name="AKR_SF"
                     /note="Aldo-keto reductase (AKR) superfamily; cl00470"
                     /db_xref="CDD:444925"
     CDS             1..186
                     /gene="LOC104055913"
                     /coded_by="XM_054070633.1:25..585"
                     /db_xref="GeneID:104055913"
ORIGIN      
        1 mpipsntdfl htweameelv daglvkaigi snfnheqier ilnktglkyk pannqikchp
       61 yltqekliky cqskgiavta ysplgspdrp wakpedpsll ddpkikiaak ynknpaqvll
      121 rfqiqrnvtv ipksvtpqqi aenfkvfdfe lakeematif sfnrnwrayt msmcknhkdy
      181 pfdaey
//
LOCUS       XP_053926702             583 aa            linear   VRT 09-MAR-2023
DEFINITION  acrosin-binding protein-like [Cuculus canorus].
ACCESSION   XP_053926702
VERSION     XP_053926702.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070727.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..583
                     /product="acrosin-binding protein-like"
                     /calculated_mol_wt=63837
     Region          131..>226
                     /region_name="PBP_sp32"
                     /note="Proacrosin binding protein sp32; pfam07222"
                     /db_xref="CDD:429354"
     CDS             1..583
                     /gene="LOC128852591"
                     /coded_by="XM_054070727.1:687..2438"
                     /db_xref="GeneID:128852591"
ORIGIN      
        1 mlfvgfsepg dslarspmpl qavasphrvp qqrgklpghs rspcclcphs psfllprgvp
       61 vspdnpqvta casaprpltt ffvasprliq ppsvawppkr terldsgtdm aslacllgll
      121 tllscvtasl ahapgsplsd keyqaffltl wppwraevlc tirqtygcls pgilkmdrle
      181 nhgvvpkgsi csdfpermrf esfcqfahyr cfqgqfyvkr ircpntsthk nlflagqhea
      241 vgsgvkdqss pareapgqas vsppgalles tgllplpptv pspaapaplp nklespaqee
      301 aswkqrlwss iskliswals tenplgsspq rspeagagst pstaqeaaqa aaphgslsdl
      361 kneeavmilc svvmkedclt slltkawkel eerlfgfgds vcdsmgrrhm dlhphsafcs
      421 lkmeqcqnmk nvkrvhcdsg nftnyispqv saqlqaaeke tsssqplqvn nvenlggprv
      481 erwcsriash gcedprvslw lkaeynafqe gdapaqvcds ngvrypnyct fkshqclqqs
      541 lynqtvsrhg cqrnasyrvl sekegeeqvq lwrqkfrslw itg
//
LOCUS       XP_053926790             382 aa            linear   VRT 09-MAR-2023
DEFINITION  acrosin-like [Cuculus canorus].
ACCESSION   XP_053926790
VERSION     XP_053926790.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070815.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 12% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..382
                     /product="acrosin-like"
                     /calculated_mol_wt=41935
     Region          77..313
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            78
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(122,171,268)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(262,289,291)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..382
                     /gene="LOC128852640"
                     /coded_by="XM_054070815.1:1..1149"
                     /db_xref="GeneID:128852640"
ORIGIN      
        1 mpvgssivlg ecvasqedga yvwiglkdee ryycimkmlf fffvllalcl pvqgswenck
       61 gtcglrpsvs ygygsvrvvg grdaqpgswp givsvqkvre thvfhacggs lihpqwvlta
      121 ahcfvnsqdv pawrvvagtt sltdmgpetq isyvrqiiih ddydnttqan dialmelyep
      181 lqctpyvqla cvpdfslqlr qlrncyvggw ggttarsggl ppslqeakvp lidlricnss
      241 gwyhgdihph nlcagypqgg idtcqgdsgg plvcqdphad hfwlvgvtsf gvgcararrp
      301 gvytstqhfr nwiltqitrh siraanatee awshipttsn pvempqttet syfssclyal
      361 nkmldfftql qeflrvlkgg gt
//
LOCUS       XP_053926923             345 aa            linear   VRT 09-MAR-2023
DEFINITION  acrosin-like [Cuculus canorus].
ACCESSION   XP_053926923
VERSION     XP_053926923.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070948.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 18% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..345
                     /product="acrosin-like"
                     /calculated_mol_wt=37957
     Region          40..276
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            41
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(85,134,231)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(225,252,254)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..345
                     /gene="LOC128852655"
                     /coded_by="XM_054070948.1:1..1038"
                     /db_xref="GeneID:128852655"
ORIGIN      
        1 mkmfflfill alclpvqgsw encktcglrp svsygygsvr vvggrdaqpg swpgivsvqk
       61 vrethvfhac ggslihpqwv ltaahcfvns qdvpawrvva gttsltdmgp etqisyvrqi
      121 iihddydktt qandialmel yeplqctpyv qlacmpdfsl qlrqlrncyv ggwgvttars
      181 gglppslqea kvplidlric nssgwyhgdi hphnlcagyp qggidtcqgd sggplvcqdp
      241 hadhfwlvgv tsfgvgcara rrpgvytstq hfrnwiltqi trhsvraana tehawshipt
      301 vsnpvempqt tepsyfsscl yalnkmldff tqlqeflrvl kgggt
//
LOCUS       XP_053927048             174 aa            linear   VRT 09-MAR-2023
DEFINITION  C-type lectin Cal-like [Cuculus canorus].
ACCESSION   XP_053927048
VERSION     XP_053927048.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071073.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 100% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..174
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..174
                     /product="C-type lectin Cal-like"
                     /calculated_mol_wt=19883
     Region          46..172
                     /region_name="CLECT"
                     /note="C-type lectin (CTL)/C-type lectin-like (CTLD)
                     domain; cl02432"
                     /db_xref="CDD:470576"
     Site            order(143,147,149,156,158..161,164..166)
                     /site_type="other"
                     /note="ligand binding surface [chemical binding]"
                     /db_xref="CDD:153064"
     CDS             1..174
                     /gene="LOC128852662"
                     /coded_by="XM_054071073.1:1..525"
                     /db_xref="GeneID:128852662"
ORIGIN      
        1 msseqaevrv grcclptaah ahptsralde etyifqepqg raqticprkw ihhrgncygy
       61 ftqrktqaqa eeecsrygpm atlasihseg ssivlgeyva sqedgayvwi glkdeerngr
      121 wkwsdnsvld ylhwgsyqps ysgycvalgn srgfeywyny pcsyqfpflc qyqa
//
LOCUS       XP_053927180             345 aa            linear   VRT 09-MAR-2023
DEFINITION  acrosin-like [Cuculus canorus].
ACCESSION   XP_053927180
VERSION     XP_053927180.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071205.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..345
                     /product="acrosin-like"
                     /calculated_mol_wt=38010
     Region          40..276
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            41
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(85,134,231)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(225,252,254)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..345
                     /gene="LOC128852671"
                     /coded_by="XM_054071205.1:1..1038"
                     /db_xref="GeneID:128852671"
ORIGIN      
        1 mkmlflfvll alclpvqgsw encktcglrp svsygygsvr vvggrdaqpg swpgivsvqk
       61 vrethvfhac ggslihpqwv ltaahcfvns qdvpawrvva gttsltdmgp etqisyvrqi
      121 iihddydktt qandialmel yeplqctpyv qlacvpdfsl qlrqlrncyv ggwggttars
      181 gglppslqea kvplidlric nssgwyhgdi hphnlcagyp qggidtcqgd sggplvcqdp
      241 hadhfwlvgv tsfgvgcara rrpgvytstq hfrnwiltqi trysvraana tehawshipt
      301 asnpvempqk tetsyfsscl yalnkmleff tqlqeflqvl kgrsm
//
LOCUS       XP_053927306             346 aa            linear   VRT 09-MAR-2023
DEFINITION  acrosin-like [Cuculus canorus].
ACCESSION   XP_053927306
VERSION     XP_053927306.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071331.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..346
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..346
                     /product="acrosin-like"
                     /calculated_mol_wt=37967
     Region          41..277
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            42
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(86,135,232)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(226,253,255)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..346
                     /gene="LOC128852675"
                     /coded_by="XM_054071331.1:1..1041"
                     /db_xref="GeneID:128852675"
ORIGIN      
        1 mkmlflfvll alclpvqgsw enckgtcglr psvsygygsv rvvggrdaqp gswpgivsvq
       61 kvrethvfha cggslihpqw vltaahcfvn sqdvpawrvv agttsltdmg petqisyvrq
      121 iiihddydkt tqandialme lyeplqctpy vqlacvpdfs lqlrqlrncy vggwgvttar
      181 sgglppslqe akvplidlkv cnssgwyhgd ihphnlcagy pqggidtcqg dsggplvcqd
      241 phadhfwlvg vtsfgvgcar arrpgvytst rhfrdwvltq itrhsvraan ateeawshfp
      301 ttsypvempe ttepsyfssc lyalnklldf ftqlqeflrv lkgggt
//
LOCUS       XP_053927436             377 aa            linear   VRT 09-MAR-2023
DEFINITION  acrosin-like [Cuculus canorus].
ACCESSION   XP_053927436
VERSION     XP_053927436.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071461.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 10% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..377
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..377
                     /product="acrosin-like"
                     /calculated_mol_wt=41698
     Region          41..277
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            42
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(86,135,232)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(226,253,255)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..377
                     /gene="LOC128852683"
                     /coded_by="XM_054071461.1:1..1134"
                     /db_xref="GeneID:128852683"
ORIGIN      
        1 mkmlffffvl lalclpvqgs wencktcglr psvsygygsv rvvggrdaqp gswpgivsvq
       61 kvrethvfha cggslihpqw vltaahcfvn sqdvpawrvv agttsltdmg petqisyvrq
      121 iiihddydkt tqandmalme lyeplqctpy vqlacvpdfs lqlrqlrncy vggwggttar
      181 sgglppslqe akvplidlkv cnssgwyhgd ihphnlcagy pqggidtcqg dsggplvcqd
      241 phadhfwlvg vtsfgvgcar arrpgvytst rhfrdwvltq itrhsvraan ateeawshfp
      301 ttsypvempe ttepsyfssc lyalnkmldf ftqlqeflrs lgrraqtrgf vtsargqglc
      361 eqrehcgqsv gwcrarh
//
LOCUS       XP_009561736             293 aa            linear   VRT 09-MAR-2023
DEFINITION  acrosin [Cuculus canorus].
ACCESSION   XP_009561736
VERSION     XP_009561736.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563441.2
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561736.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 3% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..293
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..293
                     /product="acrosin"
                     /calculated_mol_wt=31402
     Region          44..276
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cd00190"
                     /db_xref="CDD:238113"
     Site            order(84,133,231)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(225,252,254)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..293
                     /gene="LOC104061494"
                     /coded_by="XM_009563441.2:1..882"
                     /db_xref="GeneID:104061494"
ORIGIN      
        1 mnvllilvll glsrtatgtp dtcescglrp madgreisrv arsrdaqpga wpwmvsvqqv
       61 wstgivhvcg gslvgprwvl taahcfvdar nvptwrvlag athlahdrpe vqvrfvkqlv
      121 lhedydnvsq kndvalveld hpvrcgphvq raclpdpslp lsatancyvs gwgttsakaa
      181 asplvlqefq vhlidshtcn gsgwhrggvh phnvcagypr ggggdtcrgd sggplvcqdg
      241 rsdrfwlvgv sswgrgcara hrpgvytstq sfhhwilakm gldspgtttr sta
//
LOCUS       XP_053927658             383 aa            linear   VRT 09-MAR-2023
DEFINITION  paired box protein Pax-4 [Cuculus canorus].
ACCESSION   XP_053927658
VERSION     XP_053927658.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071683.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 31% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..383
                     /product="paired box protein Pax-4"
                     /calculated_mol_wt=41887
     Region          119..243
                     /region_name="PAX"
                     /note="Paired Box domain; smart00351"
                     /db_xref="CDD:128645"
     Site            order(124..125,130,132..134,136,141,153,155,164,167,
                     169..170,174,183..189,191..194,213..215,234,236..237,240,
                     243)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238076"
     Region          304..359
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     CDS             1..383
                     /gene="PAX4"
                     /coded_by="XM_054071683.1:1..1152"
                     /db_xref="GeneID:104061493"
ORIGIN      
        1 mdreggipvf qrfqrkpsgk atprlkrcgr gavvavavpv aveerserss rrgkssrkvp
       61 hgegpggvgh rrlqrpekgp elekgrvlda ttdlsdltap tvssgqvpgp erptmehqgs
      121 tsvnqlgglf vngrplptck rkkiiqlamc gvrtsdisrs lkvsngcvsk ilgryyrtga
      181 vepkaiggsk praataevva risqlkrekp sifaweirqq lhlegictnt rtlsvssinr
      241 vlrtlpgdpr mvvemgfaed pllwvsplsr cspaeagavs spgtqdpprg sasvrqlppd
      301 trhrnrtvfs rrqsealeke fqrgqypdsa treslakatq lphatirvwf snrrakwrre
      361 akrkleagga gekprveemg rgi
//
LOCUS       XP_053927754             176 aa            linear   VRT 09-MAR-2023
DEFINITION  leptin [Cuculus canorus].
ACCESSION   XP_053927754
VERSION     XP_053927754.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071779.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 19% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..176
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..176
                     /product="leptin"
                     /calculated_mol_wt=18228
     Region          27..176
                     /region_name="Leptin"
                     /note="pfam02024"
                     /db_xref="CDD:396559"
     CDS             1..176
                     /gene="LEP"
                     /coded_by="XM_054071779.1:1..531"
                     /db_xref="GeneID:128852707"
ORIGIN      
        1 mrrpglwgll wlwvpvatap pvrlqtvqed arnltrtlst rirhlqlspl sqplpraaea
       61 lgategalga teggpgateg lgateglgal arrlqalqrl lptghlalaq vandvenlrs
      121 llalmatgpg ceppprppsp ptplggapht aarvalarlr lclesiarsl egtpac
//
LOCUS       XP_053927864             810 aa            linear   VRT 09-MAR-2023
DEFINITION  cadherin-related family member 5-like [Cuculus canorus].
ACCESSION   XP_053927864
VERSION     XP_053927864.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071889.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 25% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..810
                     /product="cadherin-related family member 5-like"
                     /calculated_mol_wt=86469
     Region          245..339
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(250..251,302,304,335,337..338)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          352..444
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(355..356,407,409,441,443..444)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          467..569
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(474..475,532,534,565,567..568)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     CDS             1..810
                     /gene="LOC128852719"
                     /coded_by="XM_054071889.1:1..2433"
                     /db_xref="GeneID:128852719"
ORIGIN      
        1 mkentdgqnk rhkrallldp nsrlrgltvt pvpytavppy splpqlprgc pqylprprra
       61 pvasgplgra arsaaahprn virargarea grgsetcggv aygsgrqrav lspwslyghy
      121 ghsghslvpv vtlwspqaeg dvvpvvtvws lqravlspls prgqrrslsp lfppppaqpp
      181 prirpplrag lgqrrggsag chrgpvpvtv pmaapwwpal laaclalrlg aaaqgdgcsg
      241 fgnlfteive nsahgslvar lpsggdagsa glhlclvgad aawfyldgrs vrlnvsagrp
      301 ldreelespv lmvaltcaed gfspveyrii vqvlnendnr phfqgasdvt hniselaavh
      361 svvfsaqaed adgdtlmyvi dtaspdarff ridlpnsgkv vlaraldfes rqhlevvvta
      421 vemntkerfn asarvrvnvl dgddqypqfl pctprahrgl tictspvyta nvtegqlegg
      481 plrfspgsvy aedgdrglra titysllagh essrfhidnr tgaitllrav esrgrtptis
      541 lsvmasqlnd pskfavtqal vrvlapnrhp prfplaryra fvpagareaa llltfggrvl
      601 alrardndfp ealnpqvrys lppaqrqlfq vmpngllvar adrlqpgqrh rlqvlardee
      661 sgetanatve levlrpgqaa pqepseggsa lglgalgalg algalgalga avlglilrar
      721 srrqrqrqag gtaalpnekh pnvslrwfqp vpagkappnp ptlfypnegf ieggeapptq
      781 pppppppppf alpvpppapp vdpprnsrsr
//
LOCUS       XP_053927977             226 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H1.03 [Cuculus canorus].
ACCESSION   XP_053927977
VERSION     XP_053927977.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072002.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..226
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..226
                     /product="histone H1.03"
                     /calculated_mol_wt=22594
     Region          39..125
                     /region_name="H15"
                     /note="linker histone 1 and histone 5 domains; the basic
                     subunit of chromatin is the nucleosome, consisting of an
                     octamer of core histones, two full turns of DNA, a linker
                     histone (H1 or H5) and a variable length of linker DNA;
                     H1/H5 are chromatin-associated...; cd00073"
                     /db_xref="CDD:238028"
     Site            order(46,58,88,102)
                     /site_type="DNA binding"
                     /note="DNA-binding site [nucleotide binding]"
                     /db_xref="CDD:238028"
     Site            83..94
                     /site_type="DNA binding"
                     /note="DNA-binding site [nucleotide binding]"
                     /db_xref="CDD:238028"
     Site            114..125
                     /site_type="active"
                     /note="AKP helix motif (fragment) [active]"
                     /db_xref="CDD:238028"
     CDS             1..226
                     /gene="LOC128852727"
                     /coded_by="XM_054072002.1:11..691"
                     /db_xref="GeneID:128852727"
ORIGIN      
        1 msetapvaap dvaaaapapa kaaaakkprk aaggskarkp agpsvtelit kavsaskerk
       61 glslaalkka laaggydvek snsriklglk slvskgtlvq tkgtgasgsf rlnkkpgevk
      121 ekapkkrtaa akpkkpaakk pasaakkpkk aapvkkspkk akkpaaaavk ktakspkkvt
      181 kaakpkkava sakspakaka vkpkaakpka akpkaakakk aapkkk
//
LOCUS       XP_053928083             225 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H1.10-like [Cuculus canorus].
ACCESSION   XP_053928083
VERSION     XP_053928083.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072108.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..225
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..225
                     /product="histone H1.10-like"
                     /calculated_mol_wt=22484
     Region          41..127
                     /region_name="H15"
                     /note="linker histone 1 and histone 5 domains; the basic
                     subunit of chromatin is the nucleosome, consisting of an
                     octamer of core histones, two full turns of DNA, a linker
                     histone (H1 or H5) and a variable length of linker DNA;
                     H1/H5 are chromatin-associated...; cd00073"
                     /db_xref="CDD:238028"
     Site            order(48,60,90,104)
                     /site_type="DNA binding"
                     /note="DNA-binding site [nucleotide binding]"
                     /db_xref="CDD:238028"
     Site            85..96
                     /site_type="DNA binding"
                     /note="DNA-binding site [nucleotide binding]"
                     /db_xref="CDD:238028"
     Site            116..127
                     /site_type="active"
                     /note="AKP helix motif (fragment) [active]"
                     /db_xref="CDD:238028"
     CDS             1..225
                     /gene="LOC128852741"
                     /coded_by="XM_054072108.1:37..714"
                     /db_xref="GeneID:128852741"
ORIGIN      
        1 msetapaaap aaapapaaka aaakaaakkp kkaaggskar kpagpsvtel itkavsaske
       61 rkglslaalk kalaaggydv eknnsriklg lkslvskgtl vqtkgigasg sfrlskkpge
      121 vkekapkkrt aaakpkkpaa kkpasaakkp kktvtakksp kkakkpaaav kkvakspkka
      181 tkaakpkkaa akspakaktv kpktakpkaa kpkaakakka apkkk
//
LOCUS       XP_009556910             222 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H1.10 [Cuculus canorus].
ACCESSION   XP_009556910
VERSION     XP_009556910.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009558615.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556910.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..222
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..222
                     /product="histone H1.10"
                     /calculated_mol_wt=22293
     Region          39..125
                     /region_name="H15"
                     /note="linker histone 1 and histone 5 domains; the basic
                     subunit of chromatin is the nucleosome, consisting of an
                     octamer of core histones, two full turns of DNA, a linker
                     histone (H1 or H5) and a variable length of linker DNA;
                     H1/H5 are chromatin-associated...; cd00073"
                     /db_xref="CDD:238028"
     Site            order(46,58,88,102)
                     /site_type="DNA binding"
                     /note="DNA-binding site [nucleotide binding]"
                     /db_xref="CDD:238028"
     Site            83..94
                     /site_type="DNA binding"
                     /note="DNA-binding site [nucleotide binding]"
                     /db_xref="CDD:238028"
     Site            114..125
                     /site_type="active"
                     /note="AKP helix motif (fragment) [active]"
                     /db_xref="CDD:238028"
     CDS             1..222
                     /gene="LOC104057280"
                     /coded_by="XM_009558615.2:1168..1836"
                     /db_xref="GeneID:104057280"
ORIGIN      
        1 msetapapaa eaapaapapa akaaakkpkk aaggskarkp agpsvtelit kavsaskerk
       61 glslaalkka laaggydvek nnsriklglk slvskgtlvq tkgtgasgsf rlnkkpgevk
      121 ekapkkrtav akpkkpaakk pasaakkpkk avtakkspkk akkpaaavkk vakspkkatk
      181 aakpkkaaak spakakavkp kagkpkvvkp kakakkaapk kk
//
LOCUS       XP_009556905             221 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H1.10 [Cuculus canorus].
ACCESSION   XP_009556905
VERSION     XP_009556905.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009558610.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556905.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..221
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..221
                     /product="histone H1.10"
                     /calculated_mol_wt=22057
     Region          35..121
                     /region_name="H15"
                     /note="linker histone 1 and histone 5 domains; the basic
                     subunit of chromatin is the nucleosome, consisting of an
                     octamer of core histones, two full turns of DNA, a linker
                     histone (H1 or H5) and a variable length of linker DNA;
                     H1/H5 are chromatin-associated...; cd00073"
                     /db_xref="CDD:238028"
     Site            order(42,54,84,98)
                     /site_type="DNA binding"
                     /note="DNA-binding site [nucleotide binding]"
                     /db_xref="CDD:238028"
     Site            79..90
                     /site_type="DNA binding"
                     /note="DNA-binding site [nucleotide binding]"
                     /db_xref="CDD:238028"
     Site            110..121
                     /site_type="active"
                     /note="AKP helix motif (fragment) [active]"
                     /db_xref="CDD:238028"
     CDS             1..221
                     /gene="LOC104057276"
                     /coded_by="XM_009558610.2:46..711"
                     /db_xref="GeneID:104057276"
ORIGIN      
        1 msetapaaap avaaptakaa akkpkkaagg skarkpagps vtelitkavs askerkglsl
       61 aalkkalaag gydveknnsr iklglkslvs kgtlvqtkgt gasgsfrlnk kpgevkekap
      121 kkrtaaakpk kpaakkpasa akkpkkaapv kkspkkakkp aaaatkkaak spkkatkaak
      181 pkkavasaks pakakavkpk aakpkaakpk aakakkaapk k
//
LOCUS       XP_053928387             220 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H1.01 [Cuculus canorus].
ACCESSION   XP_053928387
VERSION     XP_053928387.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072412.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..220
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..220
                     /product="histone H1.01"
                     /calculated_mol_wt=22025
     Region          35..121
                     /region_name="H15"
                     /note="linker histone 1 and histone 5 domains; the basic
                     subunit of chromatin is the nucleosome, consisting of an
                     octamer of core histones, two full turns of DNA, a linker
                     histone (H1 or H5) and a variable length of linker DNA;
                     H1/H5 are chromatin-associated...; cd00073"
                     /db_xref="CDD:238028"
     Site            order(42,54,84,98)
                     /site_type="DNA binding"
                     /note="DNA-binding site [nucleotide binding]"
                     /db_xref="CDD:238028"
     Site            79..90
                     /site_type="DNA binding"
                     /note="DNA-binding site [nucleotide binding]"
                     /db_xref="CDD:238028"
     Site            110..121
                     /site_type="active"
                     /note="AKP helix motif (fragment) [active]"
                     /db_xref="CDD:238028"
     CDS             1..220
                     /gene="LOC104057278"
                     /coded_by="XM_054072412.1:46..708"
                     /db_xref="GeneID:104057278"
ORIGIN      
        1 msetapaaap dapapaakaa akkpkkaagg skarkpagps vtelitkavs askerkglsl
       61 aalkkalaag gydveknnsr iklglkslvs kgtlvqtkgt gasgsfrlnk kpgevkekap
      121 kkrtaaakpk kpaakkpasa akkpkkaapv kkspkkakkp aaaatkkaak spkkaaktgr
      181 pkkaaakspa kakavkpkaa kpkaakpkaa kakkaapkkk
//
LOCUS       XP_053928506             195 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H2B 1/2/3/4/6-like [Cuculus canorus].
ACCESSION   XP_053928506
VERSION     XP_053928506.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072531.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..195
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..195
                     /product="histone H2B 1/2/3/4/6-like"
                     /calculated_mol_wt=21935
     Region          99..192
                     /region_name="HFD_H2B"
                     /note="histone-fold domain found in histone H2B and
                     similar proteins; cd22910"
                     /db_xref="CDD:467035"
     Site            order(100,102,105,107,109..111,113..115,118..125,127..128,
                     131..132,135..136,138..140,142..144,148,158..159,161,
                     164..165,168,171..173,176,179..181,183..184,187..188,
                     191..192)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467035"
     Site            order(100..106,109..110,112,123..125,158)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:467035"
     Site            order(104,108..110,112..113,116..118,123..125,129,165,169,
                     178..179,181..182,185..186,188..189,192)
                     /site_type="other"
                     /note="Hif1 binding site [polypeptide binding]"
                     /db_xref="CDD:467035"
     Site            order(131,134..135,137..138,141,146,149,152..154,162..163,
                     166,170..171)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:467035"
     CDS             1..195
                     /gene="LOC128852841"
                     /coded_by="XM_054072531.1:1..588"
                     /db_xref="GeneID:128852841"
ORIGIN      
        1 mgtrierrpm aelgalgrpe gqrptnrgat lssrcfaqrr yirssrrrcr yplfyrrcll
       61 vserrafaam pepaksapap kkgskkavtk tqkkgdkkrk rsrkesysiy vykvlkqvhp
      121 dtgisskamg imnsfvndif eriageasrl ahynkrstit sreiqtavrl llpgelakha
      181 vsegtkavtk ytssk
//
LOCUS       XP_053928628             158 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H2A.J isoform X1 [Cuculus canorus].
ACCESSION   XP_053928628
VERSION     XP_053928628.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072653.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..158
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..158
                     /product="histone H2A.J isoform X1"
                     /calculated_mol_wt=17329
     Region          1..129
                     /region_name="PTZ00017"
                     /note="histone H2A; Provisional"
                     /db_xref="CDD:185399"
     CDS             1..158
                     /gene="LOC104057266"
                     /coded_by="XM_054072653.1:67..543"
                     /db_xref="GeneID:104057266"
ORIGIN      
        1 msgrgkqggk vrakaksrss raglqfpvgr vhrllrkgny aervgagapv ymaavleylt
       61 aeilelagna ardnkktrii prhlqlairn deelnkllgk vtiaqggvlp niqavllpkk
      121 teshkaksnt rrytgkhvfv sylylstifl alqeelra
//
LOCUS       XP_053928719             135 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H2A.J isoform X2 [Cuculus canorus].
ACCESSION   XP_053928719
VERSION     XP_053928719.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072744.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..135
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..135
                     /product="histone H2A.J isoform X2"
                     /calculated_mol_wt=14652
     Region          1..131
                     /region_name="PTZ00017"
                     /note="histone H2A; Provisional"
                     /db_xref="CDD:185399"
     CDS             1..135
                     /gene="LOC104057266"
                     /coded_by="XM_054072744.1:67..474"
                     /db_xref="GeneID:104057266"
ORIGIN      
        1 msgrgkqggk vrakaksrss raglqfpvgr vhrllrkgny aervgagapv ymaavleylt
       61 aeilelagna ardnkktrii prhlqlairn deelnkllgk vtiaqggvlp niqavllpkk
      121 teshkakskq qlqir
//
LOCUS       XP_053928816             276 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC104057266 isoform X3 [Cuculus canorus].
ACCESSION   XP_053928816
VERSION     XP_053928816.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072841.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..276
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..276
                     /product="uncharacterized protein LOC104057266 isoform X3"
                     /calculated_mol_wt=30544
     Region          1..130
                     /region_name="PTZ00017"
                     /note="histone H2A; Provisional"
                     /db_xref="CDD:185399"
     CDS             1..276
                     /gene="LOC104057266"
                     /coded_by="XM_054072841.1:29..859"
                     /db_xref="GeneID:104057266"
ORIGIN      
        1 msgrgkqggk vrakaksrss raglqfpvgr vhrllrkgny aervgagapv ymaavleylt
       61 aeilelagna ardnkktrii prhlqlairn deelnkllgk vtiaqggvlp niqavllpkk
      121 teshkaksks weraqrlaag aahgiaqrdw gwlkrrascs scstkrscse lpslepqsqi
      181 ipsedrhrpf slllkgiaps slshrpagls mlnarypapt dalrrrvqlw erssrsrqae
      241 dnkespatrr ytgkhvfvsy lylstiflal qeelra
//
LOCUS       XP_009556892             141 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: histone H2B 7 [Cuculus canorus].
ACCESSION   XP_009556892
VERSION     XP_009556892.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009558597.2
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..141
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..141
                     /product="LOW QUALITY PROTEIN: histone H2B 7"
                     /calculated_mol_wt=15488
     Region          45..138
                     /region_name="HFD_H2B"
                     /note="histone-fold domain found in histone H2B and
                     similar proteins; cd22910"
                     /db_xref="CDD:467035"
     Site            order(46,48,51,53,55..57,59..61,64..71,73..74,77..78,
                     81..82,84..86,88..90,94,104..105,107,110..111,114,
                     117..119,122,125..127,129..130,133..134,137..138)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467035"
     Site            order(46..52,55..56,58,69..71,104)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:467035"
     Site            order(50,54..56,58..59,62..64,69..71,75,111,115,124..125,
                     127..128,131..132,134..135,138)
                     /site_type="other"
                     /note="Hif1 binding site [polypeptide binding]"
                     /db_xref="CDD:467035"
     Site            order(77,80..81,83..84,87,92,95,98..100,108..109,112,
                     116..117)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:467035"
     CDS             1..141
                     /gene="LOC104057260"
                     /coded_by="XM_009558597.2:1..426"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /db_xref="GeneID:104057260"
ORIGIN      
        1 mllrdseelg kxllrmpepa ksapapkkgs kkavtktqkk gdkkrkrark esysiyvykv
       61 lkqvhpdtgi sskamsimns fvndiferia geasrlahyn krstitsrei qtavrlllpg
      121 elakhavseg tkavtkytss k
//
LOCUS       XP_053929051             136 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H3 [Cuculus canorus].
ACCESSION   XP_053929051
VERSION     XP_053929051.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073076.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..136
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..136
                     /product="histone H3"
                     /calculated_mol_wt=15257
     Region          1..136
                     /region_name="PTZ00018"
                     /note="histone H3; Provisional"
                     /db_xref="CDD:185400"
     Site            order(40..48,50,64..67,70,73,84..87,117..119,121)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:467036"
     Site            order(45,48,51..52,55..56,58,60,62..63,67..68,70..72,
                     74..75,77,79,82..86,88..89,92..93,96..98,100..102,
                     104..106,109,118..122,126,129)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467036"
     Site            order(49,52..53,56..57,59,95,99,102,109,113,118)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:467036"
     Site            order(107,110..111,114..115,117,123..124,127..128,
                     130..132)
                     /site_type="other"
                     /note="heterotetramer interface [polypeptide binding]"
                     /db_xref="CDD:467036"
     CDS             1..136
                     /gene="LOC104057270"
                     /coded_by="XM_054073076.1:31..441"
                     /db_xref="GeneID:104057270"
ORIGIN      
        1 martkqtark stggkaprkq latkaarksa patggvkkph ryrpgtvalr eirryqkste
       61 llirklpfqr lvreiaqdfk tdlrfqssav malqeaseay lvglfedtnl caihakrvti
      121 mpkdiqlarr irgera
//
LOCUS       XP_053929109             136 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H3 [Cuculus canorus].
ACCESSION   XP_053929109
VERSION     XP_053929109.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073134.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..136
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..136
                     /product="histone H3"
                     /calculated_mol_wt=15257
     Region          1..136
                     /region_name="PTZ00018"
                     /note="histone H3; Provisional"
                     /db_xref="CDD:185400"
     Site            order(40..48,50,64..67,70,73,84..87,117..119,121)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:467036"
     Site            order(45,48,51..52,55..56,58,60,62..63,67..68,70..72,
                     74..75,77,79,82..86,88..89,92..93,96..98,100..102,
                     104..106,109,118..122,126,129)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467036"
     Site            order(49,52..53,56..57,59,95,99,102,109,113,118)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:467036"
     Site            order(107,110..111,114..115,117,123..124,127..128,
                     130..132)
                     /site_type="other"
                     /note="heterotetramer interface [polypeptide binding]"
                     /db_xref="CDD:467036"
     CDS             1..136
                     /gene="LOC104057270"
                     /coded_by="XM_054073134.1:31..441"
                     /db_xref="GeneID:104057270"
ORIGIN      
        1 martkqtark stggkaprkq latkaarksa patggvkkph ryrpgtvalr eirryqkste
       61 llirklpfqr lvreiaqdfk tdlrfqssav malqeaseay lvglfedtnl caihakrvti
      121 mpkdiqlarr irgera
//
LOCUS       XP_053929212             136 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H3 [Cuculus canorus].
ACCESSION   XP_053929212
VERSION     XP_053929212.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073237.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..136
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..136
                     /product="histone H3"
                     /calculated_mol_wt=15257
     Region          1..136
                     /region_name="PTZ00018"
                     /note="histone H3; Provisional"
                     /db_xref="CDD:185400"
     Site            order(40..48,50,64..67,70,73,84..87,117..119,121)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:467036"
     Site            order(45,48,51..52,55..56,58,60,62..63,67..68,70..72,
                     74..75,77,79,82..86,88..89,92..93,96..98,100..102,
                     104..106,109,118..122,126,129)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467036"
     Site            order(49,52..53,56..57,59,95,99,102,109,113,118)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:467036"
     Site            order(107,110..111,114..115,117,123..124,127..128,
                     130..132)
                     /site_type="other"
                     /note="heterotetramer interface [polypeptide binding]"
                     /db_xref="CDD:467036"
     CDS             1..136
                     /gene="LOC128852908"
                     /coded_by="XM_054073237.1:1342..1752"
                     /db_xref="GeneID:128852908"
ORIGIN      
        1 martkqtark stggkaprkq latkaarksa patggvkkph ryrpgtvalr eirryqkste
       61 llirklpfqr lvreiaqdfk tdlrfqssav malqeaseay lvglfedtnl caihakrvti
      121 mpkdiqlarr irgera
//
LOCUS       XP_053929318             136 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H3 [Cuculus canorus].
ACCESSION   XP_053929318
VERSION     XP_053929318.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073343.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..136
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..136
                     /product="histone H3"
                     /calculated_mol_wt=15257
     Region          1..136
                     /region_name="PTZ00018"
                     /note="histone H3; Provisional"
                     /db_xref="CDD:185400"
     Site            order(40..48,50,64..67,70,73,84..87,117..119,121)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:467036"
     Site            order(45,48,51..52,55..56,58,60,62..63,67..68,70..72,
                     74..75,77,79,82..86,88..89,92..93,96..98,100..102,
                     104..106,109,118..122,126,129)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467036"
     Site            order(49,52..53,56..57,59,95,99,102,109,113,118)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:467036"
     Site            order(107,110..111,114..115,117,123..124,127..128,
                     130..132)
                     /site_type="other"
                     /note="heterotetramer interface [polypeptide binding]"
                     /db_xref="CDD:467036"
     CDS             1..136
                     /gene="LOC128852918"
                     /coded_by="XM_054073343.1:1340..1750"
                     /db_xref="GeneID:128852918"
ORIGIN      
        1 martkqtark stggkaprkq latkaarksa patggvkkph ryrpgtvalr eirryqkste
       61 llirklpfqr lvreiaqdfk tdlrfqssav malqeaseay lvglfedtnl caihakrvti
      121 mpkdiqlarr irgera
//
LOCUS       XP_053929438             136 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H3 [Cuculus canorus].
ACCESSION   XP_053929438
VERSION     XP_053929438.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073463.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..136
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..136
                     /product="histone H3"
                     /calculated_mol_wt=15257
     Region          1..136
                     /region_name="PTZ00018"
                     /note="histone H3; Provisional"
                     /db_xref="CDD:185400"
     Site            order(40..48,50,64..67,70,73,84..87,117..119,121)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:467036"
     Site            order(45,48,51..52,55..56,58,60,62..63,67..68,70..72,
                     74..75,77,79,82..86,88..89,92..93,96..98,100..102,
                     104..106,109,118..122,126,129)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467036"
     Site            order(49,52..53,56..57,59,95,99,102,109,113,118)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:467036"
     Site            order(107,110..111,114..115,117,123..124,127..128,
                     130..132)
                     /site_type="other"
                     /note="heterotetramer interface [polypeptide binding]"
                     /db_xref="CDD:467036"
     CDS             1..136
                     /gene="LOC128852924"
                     /coded_by="XM_054073463.1:25..435"
                     /db_xref="GeneID:128852924"
ORIGIN      
        1 martkqtark stggkaprkq latkaarksa patggvkkph ryrpgtvalr eirryqkste
       61 llirklpfqr lvreiaqdfk tdlrfqssav malqeaseay lvglfedtnl caihakrvti
      121 mpkdiqlarr irgera
//
LOCUS       XP_053929552             136 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H3 [Cuculus canorus].
ACCESSION   XP_053929552
VERSION     XP_053929552.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073577.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..136
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..136
                     /product="histone H3"
                     /calculated_mol_wt=15257
     Region          1..136
                     /region_name="PTZ00018"
                     /note="histone H3; Provisional"
                     /db_xref="CDD:185400"
     Site            order(40..48,50,64..67,70,73,84..87,117..119,121)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:467036"
     Site            order(45,48,51..52,55..56,58,60,62..63,67..68,70..72,
                     74..75,77,79,82..86,88..89,92..93,96..98,100..102,
                     104..106,109,118..122,126,129)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467036"
     Site            order(49,52..53,56..57,59,95,99,102,109,113,118)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:467036"
     Site            order(107,110..111,114..115,117,123..124,127..128,
                     130..132)
                     /site_type="other"
                     /note="heterotetramer interface [polypeptide binding]"
                     /db_xref="CDD:467036"
     CDS             1..136
                     /gene="LOC128852933"
                     /coded_by="XM_054073577.1:222..632"
                     /db_xref="GeneID:128852933"
ORIGIN      
        1 martkqtark stggkaprkq latkaarksa patggvkkph ryrpgtvalr eirryqkste
       61 llirklpfqr lvreiaqdfk tdlrfqssav malqeaseay lvglfedtnl caihakrvti
      121 mpkdiqlarr irgera
//
LOCUS       XP_053929660             136 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H3 [Cuculus canorus].
ACCESSION   XP_053929660
VERSION     XP_053929660.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073685.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..136
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..136
                     /product="histone H3"
                     /calculated_mol_wt=15257
     Region          1..136
                     /region_name="PTZ00018"
                     /note="histone H3; Provisional"
                     /db_xref="CDD:185400"
     Site            order(40..48,50,64..67,70,73,84..87,117..119,121)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:467036"
     Site            order(45,48,51..52,55..56,58,60,62..63,67..68,70..72,
                     74..75,77,79,82..86,88..89,92..93,96..98,100..102,
                     104..106,109,118..122,126,129)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467036"
     Site            order(49,52..53,56..57,59,95,99,102,109,113,118)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:467036"
     Site            order(107,110..111,114..115,117,123..124,127..128,
                     130..132)
                     /site_type="other"
                     /note="heterotetramer interface [polypeptide binding]"
                     /db_xref="CDD:467036"
     CDS             1..136
                     /gene="LOC128852945"
                     /coded_by="XM_054073685.1:14..424"
                     /db_xref="GeneID:128852945"
ORIGIN      
        1 martkqtark stggkaprkq latkaarksa patggvkkph ryrpgtvalr eirryqkste
       61 llirklpfqr lvreiaqdfk tdlrfqssav malqeaseay lvglfedtnl caihakrvti
      121 mpkdiqlarr irgera
//
LOCUS       XP_053929785             129 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H2A-IV [Cuculus canorus].
ACCESSION   XP_053929785
VERSION     XP_053929785.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073810.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..129
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..129
                     /product="histone H2A-IV"
                     /calculated_mol_wt=13809
     Region          1..129
                     /region_name="PTZ00017"
                     /note="histone H2A; Provisional"
                     /db_xref="CDD:185399"
     CDS             1..129
                     /gene="LOC104057271"
                     /coded_by="XM_054073810.1:15..404"
                     /db_xref="GeneID:104057271"
ORIGIN      
        1 msgrgkqggk arakaksrss raglqfpvgr vhrllrkgny aervgagapv ylaavleylt
       61 aeilelagna ardnkktrii prhlqlairn deelnkllgk vtiaqggvlp niqavllpkk
      121 tdshkakak
//
LOCUS       XP_053929891             129 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H2A-like [Cuculus canorus].
ACCESSION   XP_053929891
VERSION     XP_053929891.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073916.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..129
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..129
                     /product="histone H2A-like"
                     /calculated_mol_wt=13839
     Region          1..127
                     /region_name="PTZ00017"
                     /note="histone H2A; Provisional"
                     /db_xref="CDD:185399"
     CDS             1..129
                     /gene="LOC128852987"
                     /coded_by="XM_054073916.1:101..490"
                     /db_xref="GeneID:128852987"
ORIGIN      
        1 msgrgkqggk arakaksrss raglqfpvgr vhrllrkgny aervgagapv ylaavleylt
       61 aeilelagna ardnkktrii prhlqlairn deelnkllgk vtiaqggvlp niqavllpkk
      121 tdshkaktk
//
LOCUS       XP_053930020             129 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H2A-like [Cuculus canorus].
ACCESSION   XP_053930020
VERSION     XP_053930020.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074045.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..129
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..129
                     /product="histone H2A-like"
                     /calculated_mol_wt=13839
     Region          1..127
                     /region_name="PTZ00017"
                     /note="histone H2A; Provisional"
                     /db_xref="CDD:185399"
     CDS             1..129
                     /gene="LOC104057279"
                     /coded_by="XM_054074045.1:63..452"
                     /db_xref="GeneID:104057279"
ORIGIN      
        1 msgrgkqggk arakaksrss raglqfpvgr vhrllrkgny aervgagapv ylaavleylt
       61 aeilelagna ardnkktrii prhlqlairn deelnkllgk vtiaqggvlp niqavllpkk
      121 tdshkaktk
//
LOCUS       XP_053930142             129 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H2A-IV [Cuculus canorus].
ACCESSION   XP_053930142
VERSION     XP_053930142.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074167.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..129
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..129
                     /product="histone H2A-IV"
                     /calculated_mol_wt=13809
     Region          1..129
                     /region_name="PTZ00017"
                     /note="histone H2A; Provisional"
                     /db_xref="CDD:185399"
     CDS             1..129
                     /gene="LOC128853001"
                     /coded_by="XM_054074167.1:173..562"
                     /db_xref="GeneID:128853001"
ORIGIN      
        1 msgrgkqggk arakaksrss raglqfpvgr vhrllrkgny aervgagapv ylaavleylt
       61 aeilelagna ardnkktrii prhlqlairn deelnkllgk vtiaqggvlp niqavllpkk
      121 tdshkakak
//
LOCUS       XP_009556911             129 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H2A-IV [Cuculus canorus].
ACCESSION   XP_009556911
VERSION     XP_009556911.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009558616.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556911.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..129
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..129
                     /product="histone H2A-IV"
                     /calculated_mol_wt=13809
     Region          1..129
                     /region_name="PTZ00017"
                     /note="histone H2A; Provisional"
                     /db_xref="CDD:185399"
     CDS             1..129
                     /gene="LOC104057281"
                     /coded_by="XM_009558616.2:136..525"
                     /db_xref="GeneID:104057281"
ORIGIN      
        1 msgrgkqggk arakaksrss raglqfpvgr vhrllrkgny aervgagapv ylaavleylt
       61 aeilelagna ardnkktrii prhlqlairn deelnkllgk vtiaqggvlp niqavllpkk
      121 tdshkakak
//
LOCUS       XP_009556899             129 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H2A type 2-C [Cuculus canorus].
ACCESSION   XP_009556899
VERSION     XP_009556899.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009558604.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556899.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..129
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..129
                     /product="histone H2A type 2-C"
                     /calculated_mol_wt=13839
     Region          1..129
                     /region_name="PTZ00017"
                     /note="histone H2A; Provisional"
                     /db_xref="CDD:185399"
     CDS             1..129
                     /gene="LOC104057269"
                     /coded_by="XM_009558604.2:120..509"
                     /db_xref="GeneID:104057269"
ORIGIN      
        1 msgrgkqggk arakaksrss raglqfpvgr vhrllrkgny aervgagapv ylaavleylt
       61 aeilelagna ardnkktrii prhlqlairn deelnkllgk vtiaqggvlp niqavllpkk
      121 teshkaksk
//
LOCUS       XP_053930481             129 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H2A type 2-C [Cuculus canorus].
ACCESSION   XP_053930481
VERSION     XP_053930481.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074506.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..129
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..129
                     /product="histone H2A type 2-C"
                     /calculated_mol_wt=13839
     Region          1..129
                     /region_name="PTZ00017"
                     /note="histone H2A; Provisional"
                     /db_xref="CDD:185399"
     CDS             1..129
                     /gene="LOC128853026"
                     /coded_by="XM_054074506.1:571..960"
                     /db_xref="GeneID:128853026"
ORIGIN      
        1 msgrgkqggk arakaksrss raglqfpvgr vhrllrkgny aervgagapv ylaavleylt
       61 aeilelagna ardnkktrii prhlqlairn deelnkllgk vtiaqggvlp niqavllpkk
      121 teshkaksk
//
LOCUS       XP_053930579             126 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H2B 1/2/3/4/6 [Cuculus canorus].
ACCESSION   XP_053930579
VERSION     XP_053930579.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074604.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..126
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..126
                     /product="histone H2B 1/2/3/4/6"
                     /calculated_mol_wt=13819
     Region          30..123
                     /region_name="HFD_H2B"
                     /note="histone-fold domain found in histone H2B and
                     similar proteins; cd22910"
                     /db_xref="CDD:467035"
     Site            order(31,33,36,38,40..42,44..46,49..56,58..59,62..63,
                     66..67,69..71,73..75,79,89..90,92,95..96,99,102..104,107,
                     110..112,114..115,118..119,122..123)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467035"
     Site            order(31..37,40..41,43,54..56,89)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:467035"
     Site            order(35,39..41,43..44,47..49,54..56,60,96,100,109..110,
                     112..113,116..117,119..120,123)
                     /site_type="other"
                     /note="Hif1 binding site [polypeptide binding]"
                     /db_xref="CDD:467035"
     Site            order(62,65..66,68..69,72,77,80,83..85,93..94,97,101..102)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:467035"
     CDS             1..126
                     /gene="LOC104057272"
                     /coded_by="XM_054074604.1:8..388"
                     /db_xref="GeneID:104057272"
ORIGIN      
        1 mpepaksapa pkkgskkavt ktqkkgdkkr krsrkesysi yvykvlkqvh pdtgisskam
       61 gimnsfvndi feriageasr lahynkrsti tsreiqtavr lllpgelakh avsegtkavt
      121 kytssk
//
LOCUS       XP_053930695             126 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H2B 1/2/3/4/6 [Cuculus canorus].
ACCESSION   XP_053930695
VERSION     XP_053930695.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074720.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..126
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..126
                     /product="histone H2B 1/2/3/4/6"
                     /calculated_mol_wt=13819
     Region          30..123
                     /region_name="HFD_H2B"
                     /note="histone-fold domain found in histone H2B and
                     similar proteins; cd22910"
                     /db_xref="CDD:467035"
     Site            order(31,33,36,38,40..42,44..46,49..56,58..59,62..63,
                     66..67,69..71,73..75,79,89..90,92,95..96,99,102..104,107,
                     110..112,114..115,118..119,122..123)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467035"
     Site            order(31..37,40..41,43,54..56,89)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:467035"
     Site            order(35,39..41,43..44,47..49,54..56,60,96,100,109..110,
                     112..113,116..117,119..120,123)
                     /site_type="other"
                     /note="Hif1 binding site [polypeptide binding]"
                     /db_xref="CDD:467035"
     Site            order(62,65..66,68..69,72,77,80,83..85,93..94,97,101..102)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:467035"
     CDS             1..126
                     /gene="LOC104057275"
                     /coded_by="XM_054074720.1:34..414"
                     /db_xref="GeneID:104057275"
ORIGIN      
        1 mpepaksapa pkkgskkavt ktqkkgdkkr krsrkesysi yvykvlkqvh pdtgisskam
       61 gimnsfvndi feriageasr lahynkrsti tsreiqtavr lllpgelakh avsegtkavt
      121 kytssk
//
LOCUS       XP_009556903             126 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H2B 1/2/3/4/6 [Cuculus canorus].
ACCESSION   XP_009556903
VERSION     XP_009556903.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009558608.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556903.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..126
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..126
                     /product="histone H2B 1/2/3/4/6"
                     /calculated_mol_wt=13819
     Region          30..123
                     /region_name="HFD_H2B"
                     /note="histone-fold domain found in histone H2B and
                     similar proteins; cd22910"
                     /db_xref="CDD:467035"
     Site            order(31,33,36,38,40..42,44..46,49..56,58..59,62..63,
                     66..67,69..71,73..75,79,89..90,92,95..96,99,102..104,107,
                     110..112,114..115,118..119,122..123)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467035"
     Site            order(31..37,40..41,43,54..56,89)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:467035"
     Site            order(35,39..41,43..44,47..49,54..56,60,96,100,109..110,
                     112..113,116..117,119..120,123)
                     /site_type="other"
                     /note="Hif1 binding site [polypeptide binding]"
                     /db_xref="CDD:467035"
     Site            order(62,65..66,68..69,72,77,80,83..85,93..94,97,101..102)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:467035"
     CDS             1..126
                     /gene="LOC104057273"
                     /coded_by="XM_009558608.2:64..444"
                     /db_xref="GeneID:104057273"
ORIGIN      
        1 mpepaksapa pkkgskkavt ktqkkgdkkr krsrkesysi yvykvlkqvh pdtgisskam
       61 gimnsfvndi feriageasr lahynkrsti tsreiqtavr lllpgelakh avsegtkavt
      121 kytssk
//
LOCUS       XP_009556894             126 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H2B 8 [Cuculus canorus].
ACCESSION   XP_009556894
VERSION     XP_009556894.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009558599.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..126
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..126
                     /product="histone H2B 8"
                     /calculated_mol_wt=13833
     Region          30..123
                     /region_name="HFD_H2B"
                     /note="histone-fold domain found in histone H2B and
                     similar proteins; cd22910"
                     /db_xref="CDD:467035"
     Site            order(31,33,36,38,40..42,44..46,49..56,58..59,62..63,
                     66..67,69..71,73..75,79,89..90,92,95..96,99,102..104,107,
                     110..112,114..115,118..119,122..123)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467035"
     Site            order(31..37,40..41,43,54..56,89)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:467035"
     Site            order(35,39..41,43..44,47..49,54..56,60,96,100,109..110,
                     112..113,116..117,119..120,123)
                     /site_type="other"
                     /note="Hif1 binding site [polypeptide binding]"
                     /db_xref="CDD:467035"
     Site            order(62,65..66,68..69,72,77,80,83..85,93..94,97,101..102)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:467035"
     CDS             1..126
                     /gene="LOC104057265"
                     /coded_by="XM_009558599.2:41..421"
                     /db_xref="GeneID:104057265"
ORIGIN      
        1 mpepaksapa pkkgskkavt ktqkkgdkkr rktrkesysi yvykvlkqvh pdtgisskam
       61 gimnsfvndi feriageasr lahynkrsti tsreiqtavr lllpgelakh avsegtkavt
      121 kytssk
//
LOCUS       XP_053931027             103 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H4 [Cuculus canorus].
ACCESSION   XP_053931027
VERSION     XP_053931027.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075052.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..103
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..103
                     /product="histone H4"
                     /calculated_mol_wt=11236
     Region          1..103
                     /region_name="PLN00035"
                     /note="histone H4; Provisional"
                     /db_xref="CDD:177669"
     CDS             1..103
                     /gene="LOC104057277"
                     /coded_by="XM_054075052.1:2752..3063"
                     /db_xref="GeneID:104057277"
ORIGIN      
        1 msgrgkggkg lgkggakrhr kvlrdniqgi tkpairrlar rggvkrisgl iyeetrgvlk
       61 vflenvirda vtytehakrk tvtamdvvya lkrqgrtlyg fgg
//
LOCUS       XP_053931099             103 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H4 [Cuculus canorus].
ACCESSION   XP_053931099
VERSION     XP_053931099.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075124.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..103
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..103
                     /product="histone H4"
                     /calculated_mol_wt=11236
     Region          1..103
                     /region_name="PLN00035"
                     /note="histone H4; Provisional"
                     /db_xref="CDD:177669"
     CDS             1..103
                     /gene="LOC104057277"
                     /coded_by="XM_054075124.1:2808..3119"
                     /db_xref="GeneID:104057277"
ORIGIN      
        1 msgrgkggkg lgkggakrhr kvlrdniqgi tkpairrlar rggvkrisgl iyeetrgvlk
       61 vflenvirda vtytehakrk tvtamdvvya lkrqgrtlyg fgg
//
LOCUS       XP_053931216             103 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H4 [Cuculus canorus].
ACCESSION   XP_053931216
VERSION     XP_053931216.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075241.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..103
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..103
                     /product="histone H4"
                     /calculated_mol_wt=11236
     Region          1..103
                     /region_name="PLN00035"
                     /note="histone H4; Provisional"
                     /db_xref="CDD:177669"
     CDS             1..103
                     /gene="LOC128853113"
                     /coded_by="XM_054075241.1:20..331"
                     /db_xref="GeneID:128853113"
ORIGIN      
        1 msgrgkggkg lgkggakrhr kvlrdniqgi tkpairrlar rggvkrisgl iyeetrgvlk
       61 vflenvirda vtytehakrk tvtamdvvya lkrqgrtlyg fgg
//
LOCUS       XP_053931350             103 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H4 [Cuculus canorus].
ACCESSION   XP_053931350
VERSION     XP_053931350.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075375.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..103
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..103
                     /product="histone H4"
                     /calculated_mol_wt=11236
     Region          1..103
                     /region_name="PLN00035"
                     /note="histone H4; Provisional"
                     /db_xref="CDD:177669"
     CDS             1..103
                     /gene="LOC128853119"
                     /coded_by="XM_054075375.1:20..331"
                     /db_xref="GeneID:128853119"
ORIGIN      
        1 msgrgkggkg lgkggakrhr kvlrdniqgi tkpairrlar rggvkrisgl iyeetrgvlk
       61 vflenvirda vtytehakrk tvtamdvvya lkrqgrtlyg fgg
//
LOCUS       XP_053931456             103 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H4 [Cuculus canorus].
ACCESSION   XP_053931456
VERSION     XP_053931456.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075481.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..103
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..103
                     /product="histone H4"
                     /calculated_mol_wt=11236
     Region          1..103
                     /region_name="PLN00035"
                     /note="histone H4; Provisional"
                     /db_xref="CDD:177669"
     CDS             1..103
                     /gene="LOC128853125"
                     /coded_by="XM_054075481.1:37..348"
                     /db_xref="GeneID:128853125"
ORIGIN      
        1 msgrgkggkg lgkggakrhr kvlrdniqgi tkpairrlar rggvkrisgl iyeetrgvlk
       61 vflenvirda vtytehakrk tvtamdvvya lkrqgrtlyg fgg
//
LOCUS       XP_053931563             103 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H4 [Cuculus canorus].
ACCESSION   XP_053931563
VERSION     XP_053931563.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075588.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..103
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..103
                     /product="histone H4"
                     /calculated_mol_wt=11236
     Region          1..103
                     /region_name="PLN00035"
                     /note="histone H4; Provisional"
                     /db_xref="CDD:177669"
     CDS             1..103
                     /gene="LOC104057264"
                     /coded_by="XM_054075588.1:173..484"
                     /db_xref="GeneID:104057264"
ORIGIN      
        1 msgrgkggkg lgkggakrhr kvlrdniqgi tkpairrlar rggvkrisgl iyeetrgvlk
       61 vflenvirda vtytehakrk tvtamdvvya lkrqgrtlyg fgg
//
LOCUS       XP_053931670             103 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H4 [Cuculus canorus].
ACCESSION   XP_053931670
VERSION     XP_053931670.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075695.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..103
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..103
                     /product="histone H4"
                     /calculated_mol_wt=11236
     Region          1..103
                     /region_name="PLN00035"
                     /note="histone H4; Provisional"
                     /db_xref="CDD:177669"
     CDS             1..103
                     /gene="LOC128853154"
                     /coded_by="XM_054075695.1:1073..1384"
                     /db_xref="GeneID:128853154"
ORIGIN      
        1 msgrgkggkg lgkggakrhr kvlrdniqgi tkpairrlar rggvkrisgl iyeetrgvlk
       61 vflenvirda vtytehakrk tvtamdvvya lkrqgrtlyg fgg
//
LOCUS       XP_053931759             103 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H4 [Cuculus canorus].
ACCESSION   XP_053931759
VERSION     XP_053931759.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075784.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..103
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..103
                     /product="histone H4"
                     /calculated_mol_wt=11236
     Region          1..103
                     /region_name="PLN00035"
                     /note="histone H4; Provisional"
                     /db_xref="CDD:177669"
     CDS             1..103
                     /gene="LOC128853175"
                     /coded_by="XM_054075784.1:336..647"
                     /db_xref="GeneID:128853175"
ORIGIN      
        1 msgrgkggkg lgkggakrhr kvlrdniqgi tkpairrlar rggvkrisgl iyeetrgvlk
       61 vflenvirda vtytehakrk tvtamdvvya lkrqgrtlyg fgg
//
LOCUS       XP_053931875             126 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H2B 1/2/3/4/6-like [Cuculus canorus].
ACCESSION   XP_053931875
VERSION     XP_053931875.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075900.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..126
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..126
                     /product="histone H2B 1/2/3/4/6-like"
                     /calculated_mol_wt=13819
     Region          30..123
                     /region_name="HFD_H2B"
                     /note="histone-fold domain found in histone H2B and
                     similar proteins; cd22910"
                     /db_xref="CDD:467035"
     Site            order(31,33,36,38,40..42,44..46,49..56,58..59,62..63,
                     66..67,69..71,73..75,79,89..90,92,95..96,99,102..104,107,
                     110..112,114..115,118..119,122..123)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467035"
     Site            order(31..37,40..41,43,54..56,89)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:467035"
     Site            order(35,39..41,43..44,47..49,54..56,60,96,100,109..110,
                     112..113,116..117,119..120,123)
                     /site_type="other"
                     /note="Hif1 binding site [polypeptide binding]"
                     /db_xref="CDD:467035"
     Site            order(62,65..66,68..69,72,77,80,83..85,93..94,97,101..102)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:467035"
     CDS             1..126
                     /gene="LOC128853196"
                     /coded_by="XM_054075900.1:24..404"
                     /db_xref="GeneID:128853196"
ORIGIN      
        1 mpepaksapa pkkgskkavt ktqkkgdkkr krsrkesysi yvykvlkqvh pdtgisskam
       61 gimnsfvndi feriageasr lahynkrsti tsreiqtavr lllpgelakh avsegtkavt
      121 kytssk
//
LOCUS       XP_053931988            1215 aa            linear   VRT 09-MAR-2023
DEFINITION  filamin A-interacting protein 1-like isoform X1 [Cuculus canorus].
ACCESSION   XP_053931988
VERSION     XP_053931988.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076013.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1215
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1215
                     /product="filamin A-interacting protein 1-like isoform X1"
                     /calculated_mol_wt=138807
     Region          71..253
                     /region_name="CortBP2"
                     /note="Cortactin-binding protein-2; pfam09727"
                     /db_xref="CDD:462860"
     Region          <256..775
                     /region_name="PRK03918"
                     /note="DNA double-strand break repair ATPase Rad50"
                     /db_xref="CDD:235175"
     CDS             1..1215
                     /gene="FILIP1L"
                     /coded_by="XM_054076013.1:16..3663"
                     /db_xref="GeneID:104055775"
ORIGIN      
        1 mrsrsnstes ptrpklnqqr pkdhgkeeag ysgsgnvqrr qkkddaaras tilrspkaek
       61 kqrsyfkkre dlsrddllfl lsvlegelqa qdevinvlka ekidlallea qygfvtpkkv
      121 lealqrdaiq tkaeqwqedi yekpmgeldk vvekqkethr rmleqllmve kshrqtlcel
      181 eeekrkhsky meksdeftnl leqererlkk lleqetayqa kkekennkki aklkedltkl
      241 ksfalmvvde qqrlteqlnq qsqkireltt saeqahekla faeakvqeee qrasrleael
      301 qaqssknsqd qeammakltn edsqnrqlrl kltalsrqid eleetnkslr kaeeelqdlr
      361 dkinkgecgn stlmseveel rkrllemegk deelikmedq crelnrklek easqsknlkg
      421 evdklnkrim elekledafn kskqecyslk cnlerekmlt kqlsheldgl karigeleai
      481 esklekteft lkedltklks ltvmlvderk tmgekikqte eklqaatsql qveqkkvmsv
      541 teklieeskk alktksdaee kvssvtkerd elktklkaee ekgsdlvskv nilrkrlqsl
      601 eavekellkn klkestksst slqqennkik elsqeverlk qklkemkaie ddlmktedef
      661 eslerryvse rdrakllsee lealkmevar ykltekaesn qeqrlfkklk eeeaksshls
      721 revdalkeki heyiatedli chlrsdhtvl qkkllqqenk nrelaremes ltkeleryrr
      781 fsknfrpsln grrisdlqvf skevqtdpsd neppdyktli plertvingq lyedsdnedk
      841 dnneeqtvsf ksnssitnav nkklwipwmk skeshpqngk ihtkqngnca qtgdlvlsht
      901 pgqplhikvt pdhgqntatl eitspttesp hsytstavip ncgtpkqrit iiqnasltpv
      961 kakaaesyts peqvispitm atftrsqtpe scgsltpert msplalpgss sqeqilcsep
     1021 lekgakhtif rvspdrqssw qfqrsnstgs svittednki hihlgspyvq altnskpitp
     1081 ckpvqdnrtp glanglpikp tnkitssiti tptatplprq sqititdafh rsiptripkp
     1141 kptsttkvpv kipaghlnkp lqdsssgklr iirtvtktcl qsggrsvysn slngstdnlr
     1201 ensfhiglsl rtaks
//
LOCUS       XP_053932060            1186 aa            linear   VRT 09-MAR-2023
DEFINITION  filamin A-interacting protein 1-like isoform X2 [Cuculus canorus].
ACCESSION   XP_053932060
VERSION     XP_053932060.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076085.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1186
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1186
                     /product="filamin A-interacting protein 1-like isoform X2"
                     /calculated_mol_wt=135643
     Region          71..253
                     /region_name="CortBP2"
                     /note="Cortactin-binding protein-2; pfam09727"
                     /db_xref="CDD:462860"
     Region          <256..775
                     /region_name="PRK03918"
                     /note="DNA double-strand break repair ATPase Rad50"
                     /db_xref="CDD:235175"
     CDS             1..1186
                     /gene="FILIP1L"
                     /coded_by="XM_054076085.1:16..3576"
                     /db_xref="GeneID:104055775"
ORIGIN      
        1 mrsrsnstes ptrpklnqqr pkdhgkeeag ysgsgnvqrr qkkddaaras tilrspkaek
       61 kqrsyfkkre dlsrddllfl lsvlegelqa qdevinvlka ekidlallea qygfvtpkkv
      121 lealqrdaiq tkaeqwqedi yekpmgeldk vvekqkethr rmleqllmve kshrqtlcel
      181 eeekrkhsky meksdeftnl leqererlkk lleqetayqa kkekennkki aklkedltkl
      241 ksfalmvvde qqrlteqlnq qsqkireltt saeqahekla faeakvqeee qrasrleael
      301 qaqssknsqd qeammakltn edsqnrqlrl kltalsrqid eleetnkslr kaeeelqdlr
      361 dkinkgecgn stlmseveel rkrllemegk deelikmedq crelnrklek easqsknlkg
      421 evdklnkrim elekledafn kskqecyslk cnlerekmlt kqlsheldgl karigeleai
      481 esklekteft lkedltklks ltvmlvderk tmgekikqte eklqaatsql qveqkkvmsv
      541 teklieeskk alktksdaee kvssvtkerd elktklkaee ekgsdlvskv nilrkrlqsl
      601 eavekellkn klkestksst slqqennkik elsqeverlk qklkemkaie ddlmktedef
      661 eslerryvse rdrakllsee lealkmevar ykltekaesn qeqrlfkklk eeeaksshls
      721 revdalkeki heyiatedli chlrsdhtvl qkkllqqenk nrelaremes ltkeleryrr
      781 fsknfrpsln grrisdlqvf skevqtdpsd neppdyktli plertvingq lyedsdnedk
      841 dnneeqtvsf ksnssitnav nkklwipwmk skeshpqngk ihtkqngnca qtgdlvlsht
      901 pgqplhikvt pdhgqntatl eitspttesp hsytstavip ncgtpkqrit iiqnasltpv
      961 kakaaesyts peqvispitm atftrsqtpe scgsltpert msplalpgss sqeqilcsep
     1021 lekgakhtif rvspdrqssw qfqrsnstgs svittednki hihlgspyvq altnskpitp
     1081 ckpvqdnrtp glanglpikp tnkitssiti tptatplprq sqititdafh rsiptripkp
     1141 kptsttkvpv kipaghlnkp lqdsssgklr iirtvtktcl qsggrs
//
LOCUS       XP_053932119             970 aa            linear   VRT 09-MAR-2023
DEFINITION  filamin A-interacting protein 1-like isoform X3 [Cuculus canorus].
ACCESSION   XP_053932119
VERSION     XP_053932119.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076144.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..970
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..970
                     /product="filamin A-interacting protein 1-like isoform X3"
                     /calculated_mol_wt=110036
     Region          <11..538
                     /region_name="PRK03918"
                     /note="DNA double-strand break repair ATPase Rad50"
                     /db_xref="CDD:235175"
     CDS             1..970
                     /gene="FILIP1L"
                     /coded_by="XM_054076144.1:291..3203"
                     /db_xref="GeneID:104055775"
ORIGIN      
        1 mvvdeqqrlt eqlnqqsqki relttsaeqa heklafaeak vqeeeqrasr leaelqaqss
       61 knsqdqeamm akltnedsqn rqlrlkltal srqideleet nkslrkaeee lqdlrdkink
      121 gecgnstlms eveelrkrll emegkdeeli kmedqcreln rklekeasqs knlkgevdkl
      181 nkrimelekl edafnkskqe cyslkcnler ekmltkqlsh eldglkarig eleaieskle
      241 kteftlkedl tklksltvml vderktmgek ikqteeklqa atsqlqveqk kvmsvtekli
      301 eeskkalktk sdaeekvssv tkerdelktk lkaeeekgsd lvskvnilrk rlqsleavek
      361 ellknklkes tksstslqqe nnkikelsqe verlkqklke mkaieddlmk tedefesler
      421 ryvserdrak llseelealk mevaryklte kaesnqeqrl fkklkeeeak sshlsrevda
      481 lkekiheyia tedlichlrs dhtvlqkkll qqenknrela remesltkel eryrrfsknf
      541 rpslngrris dlqvfskevq tdpsdneppd yktliplert vingqlyeds dnedkdnnee
      601 qtvsfksnss itnavnkklw ipwmkskesh pqngkihtkq ngncaqtgdl vlshtpgqpl
      661 hikvtpdhgq ntatleitsp ttesphsyts tavipncgtp kqritiiqna sltpvkakaa
      721 esytspeqvi spitmatftr sqtpescgsl tpertmspla lpgsssqeqi lcseplekga
      781 khtifrvspd rqsswqfqrs nstgssvitt ednkihihlg spyvqaltns kpitpckpvq
      841 dnrtpglang lpikptnkit ssititptat plprqsqiti tdafhrsipt ripkpkptst
      901 tkvpvkipag hlnkplqdss sgklriirtv tktclqsggr svysnslngs tdnlrensfh
      961 iglslrtaks
//
LOCUS       XP_053932208             970 aa            linear   VRT 09-MAR-2023
DEFINITION  filamin A-interacting protein 1-like isoform X3 [Cuculus canorus].
ACCESSION   XP_053932208
VERSION     XP_053932208.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076233.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..970
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..970
                     /product="filamin A-interacting protein 1-like isoform X3"
                     /calculated_mol_wt=110036
     Region          <11..538
                     /region_name="PRK03918"
                     /note="DNA double-strand break repair ATPase Rad50"
                     /db_xref="CDD:235175"
     CDS             1..970
                     /gene="FILIP1L"
                     /coded_by="XM_054076233.1:141..3053"
                     /db_xref="GeneID:104055775"
ORIGIN      
        1 mvvdeqqrlt eqlnqqsqki relttsaeqa heklafaeak vqeeeqrasr leaelqaqss
       61 knsqdqeamm akltnedsqn rqlrlkltal srqideleet nkslrkaeee lqdlrdkink
      121 gecgnstlms eveelrkrll emegkdeeli kmedqcreln rklekeasqs knlkgevdkl
      181 nkrimelekl edafnkskqe cyslkcnler ekmltkqlsh eldglkarig eleaieskle
      241 kteftlkedl tklksltvml vderktmgek ikqteeklqa atsqlqveqk kvmsvtekli
      301 eeskkalktk sdaeekvssv tkerdelktk lkaeeekgsd lvskvnilrk rlqsleavek
      361 ellknklkes tksstslqqe nnkikelsqe verlkqklke mkaieddlmk tedefesler
      421 ryvserdrak llseelealk mevaryklte kaesnqeqrl fkklkeeeak sshlsrevda
      481 lkekiheyia tedlichlrs dhtvlqkkll qqenknrela remesltkel eryrrfsknf
      541 rpslngrris dlqvfskevq tdpsdneppd yktliplert vingqlyeds dnedkdnnee
      601 qtvsfksnss itnavnkklw ipwmkskesh pqngkihtkq ngncaqtgdl vlshtpgqpl
      661 hikvtpdhgq ntatleitsp ttesphsyts tavipncgtp kqritiiqna sltpvkakaa
      721 esytspeqvi spitmatftr sqtpescgsl tpertmspla lpgsssqeqi lcseplekga
      781 khtifrvspd rqsswqfqrs nstgssvitt ednkihihlg spyvqaltns kpitpckpvq
      841 dnrtpglang lpikptnkit ssititptat plprqsqiti tdafhrsipt ripkpkptst
      901 tkvpvkipag hlnkplqdss sgklriirtv tktclqsggr svysnslngs tdnlrensfh
      961 iglslrtaks
//
LOCUS       XP_053932345             720 aa            linear   VRT 09-MAR-2023
DEFINITION  discoidin, CUB and LCCL domain-containing protein 2 [Cuculus
            canorus].
ACCESSION   XP_053932345
VERSION     XP_053932345.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076370.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..720
                     /product="discoidin, CUB and LCCL domain-containing
                     protein 2"
                     /calculated_mol_wt=79003
     Region          40..154
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cd00041"
                     /db_xref="CDD:238001"
     Site            order(49,51,53,80,85,125,149,151,153..154)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     Region          161..243
                     /region_name="LCCL"
                     /note="LCCL domain; cl02694"
                     /db_xref="CDD:445888"
     Region          264..416
                     /region_name="FA58C"
                     /note="Coagulation factor 5/8 C-terminal domain, discoidin
                     domain; Cell surface-attached carbohydrate-binding domain,
                     present in eukaryotes and assumed to have horizontally
                     transferred to eubacterial genomes; cd00057"
                     /db_xref="CDD:238014"
     Site            order(309,337,344)
                     /site_type="other"
                     /note="sugar binding site [chemical binding]"
                     /db_xref="CDD:238014"
     CDS             1..720
                     /gene="DCBLD2"
                     /coded_by="XM_054076370.1:137..2299"
                     /db_xref="GeneID:104055832"
ORIGIN      
        1 mvstgrprpa gtrqpasplr lllfllllpr gtgaqkgdgc ghtvlgpesg tlasinypqt
       61 spnstvcewe irvkpgqrvq lkfgdfdidd sdschssylr vhngigptrt eigkycglgf
      121 qmdglitsks nevtvqfmsg ihtsgrgfla aysttdksdl itcldnashf tepefnkycp
      181 agcvipfadv sgtiphgyrd ssslcmagvh agvvsntlgg qinvviskgi thyegslann
      241 vtskvgplst slftfktsgc ygtlgmesga ipdsqitass vlersnetgq vnvwkpenar
      301 lkrvsppwaa sisdehqwlq idlnkekrit giittgsnla eydyyvsayr ilysddaqkw
      361 tvyrepgmdr dkifqgntes ykevrnnfip piiarfirin plkwhqkiam kvellgcqfs
      421 igrspkitmr ppppqnknda knddfiedfv hsvktslqtd kttftpeikn ttvtpsvtkd
      481 valaavlvpv lvmvfttlil ilvcawhwrn rkkkmegtyd lpywdragww kgmkqflptk
      541 saeheetpvr yssseishlr prevptmlqt esaeyaqplv ggivgtlhqr stfkpeegke
      601 asyadldpyn spmqevyhay aeplpitgpe yatpiimdms shpstplgvp sistfkaagn
      661 qapplvgtyn kllsrtdsts saralydtpk gqpgpgatee lvyqvpqsva hstgskdels
//
LOCUS       XP_053932467             694 aa            linear   VRT 09-MAR-2023
DEFINITION  TBC1 domain family member 23 isoform X1 [Cuculus canorus].
ACCESSION   XP_053932467
VERSION     XP_053932467.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076492.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..694
                     /product="TBC1 domain family member 23 isoform X1"
                     /calculated_mol_wt=77943
     Region          74..240
                     /region_name="RabGAP-TBC"
                     /note="Rab-GTPase-TBC domain; pfam00566"
                     /db_xref="CDD:459855"
     Region          333..>377
                     /region_name="RHOD"
                     /note="Rhodanese Homology Domain (RHOD); an alpha beta
                     fold domain found duplicated in the rhodanese protein. The
                     cysteine containing enzymatically active version of the
                     domain is also found in the Cdc25 class of protein
                     phosphatases and a variety of proteins...; cl00125"
                     /db_xref="CDD:444705"
     Site            394
                     /site_type="active"
                     /note="active site residue [active]"
                     /db_xref="CDD:238723"
     Region          444..670
                     /region_name="TBC1D23_C"
                     /note="TBC1 domain family member 23 C-terminal; pfam19430"
                     /db_xref="CDD:437262"
     CDS             1..694
                     /gene="TBC1D23"
                     /coded_by="XM_054076492.1:107..2191"
                     /db_xref="GeneID:104055774"
ORIGIN      
        1 maegedsppp rrwekdlada leeggcdlet vrniiqgrql padlrakvwk ialnvvgkgd
       61 slaswdgsld lpeqsiihkd cqelieqlvp eeeksvllld iesvitfyck srnvkysscl
      121 gwihllkplv hlrlprsdly ncfyaimnkf iprdcfmkgr pfhlfrlllq yhepelcsfl
      181 dtkkmtpdsy alnwlgslfs yycsadvtqa iwdgylqqad pffiyflmli ilvnakdvil
      241 aqeldkeemi kfletspanl dlediedlfs laqyycsktp asfrkdnhsl fgssllglkd
      301 detdlsqalc lavsvseilq anqqqgegvr ffvvdcrpae qynaghlsta fhldsdlmlq
      361 npsefaqsvk slleaqkqsi esgsiaggeh lcfmgsgree edmymnmvla hflqknkeyv
      421 siakggfmal qqhladinve gpengyghwi astsgsrnsi issvdgdspn gssdgkgvks
      481 lvnkmtvalk tksvnvkekv isfientstp vdripfnipw pdraslerhv sssdrvgkpy
      541 rgvkpvfsig deeeydtdei dsssmsdddr keivniqtwi nkpdvkynfp cnevkenghm
      601 fpshllvtat hmyclreips rkglayiqsr qalnsvvkit skkkhpelit fkygnsntsg
      661 ieilaveryl ipnagdatka ikqqimkvld ales
//
LOCUS       XP_053932550             679 aa            linear   VRT 09-MAR-2023
DEFINITION  TBC1 domain family member 23 isoform X2 [Cuculus canorus].
ACCESSION   XP_053932550
VERSION     XP_053932550.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076575.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..679
                     /product="TBC1 domain family member 23 isoform X2"
                     /calculated_mol_wt=76150
     Region          74..240
                     /region_name="RabGAP-TBC"
                     /note="Rab-GTPase-TBC domain; pfam00566"
                     /db_xref="CDD:459855"
     Region          333..>377
                     /region_name="RHOD"
                     /note="Rhodanese Homology Domain (RHOD); an alpha beta
                     fold domain found duplicated in the rhodanese protein. The
                     cysteine containing enzymatically active version of the
                     domain is also found in the Cdc25 class of protein
                     phosphatases and a variety of proteins...; cl00125"
                     /db_xref="CDD:444705"
     Site            394
                     /site_type="active"
                     /note="active site residue [active]"
                     /db_xref="CDD:238089"
     Region          444..655
                     /region_name="TBC1D23_C"
                     /note="TBC1 domain family member 23 C-terminal; pfam19430"
                     /db_xref="CDD:437262"
     CDS             1..679
                     /gene="TBC1D23"
                     /coded_by="XM_054076575.1:107..2146"
                     /db_xref="GeneID:104055774"
ORIGIN      
        1 maegedsppp rrwekdlada leeggcdlet vrniiqgrql padlrakvwk ialnvvgkgd
       61 slaswdgsld lpeqsiihkd cqelieqlvp eeeksvllld iesvitfyck srnvkysscl
      121 gwihllkplv hlrlprsdly ncfyaimnkf iprdcfmkgr pfhlfrlllq yhepelcsfl
      181 dtkkmtpdsy alnwlgslfs yycsadvtqa iwdgylqqad pffiyflmli ilvnakdvil
      241 aqeldkeemi kfletspanl dlediedlfs laqyycsktp asfrkdnhsl fgssllglkd
      301 detdlsqalc lavsvseilq anqqqgegvr ffvvdcrpae qynaghlsta fhldsdlmlq
      361 npsefaqsvk slleaqkqsi esgsiaggeh lcfmgsgree edmymnmvla hflqknkeyv
      421 siakggfmal qqhladinve gpengyghwi astsgsrnsi issvdgdspn gssdgkgvks
      481 lvnkmtvalk tksvnvkekv isfientstp vdrhvsssdr vgkpyrgvkp vfsigdeeey
      541 dtdeidsssm sdddrkeivn iqtwinkpdv kynfpcnevk enghmfpshl lvtathmycl
      601 reipsrkgla yiqsrqalns vvkitskkkh pelitfkygn sntsgieila verylipnag
      661 datkaikqqi mkvldales
//
LOCUS       XP_009555248             350 aa            linear   VRT 09-MAR-2023
DEFINITION  cell cycle control protein 50C [Cuculus canorus].
ACCESSION   XP_009555248
VERSION     XP_009555248.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556953.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..350
                     /product="cell cycle control protein 50C"
                     /calculated_mol_wt=39726
     Region          60..344
                     /region_name="CDC50"
                     /note="LEM3 (ligand-effect modulator 3) family / CDC50
                     family; pfam03381"
                     /db_xref="CDD:460906"
     CDS             1..350
                     /gene="LOC104055778"
                     /coded_by="XM_009556953.2:704..1756"
                     /db_xref="GeneID:104055778"
ORIGIN      
        1 mknktsflpq egeahpsrcp dntafkqqkl pawkpqltia svlssfflig afclavgvcl
       61 ilsansvrei qidysdkcsd csklrenssn wskechcsvn ftlkedvldd vfmyyglqnf
      121 yqnhrryvis rsdaqllgrn vniqksycap fatyrngtpm apcgaiansm fndtidlfyn
      181 lksyaiqvpl letgnswwtd knvkfrnpns ynlssafagt arppywqkpv ymldkedern
      241 ngylnddfii wmrvsafatf rnlyrrvkrv grfadglpag nytfrisynf pvtkfkgrkh
      301 vilstvvwsg gsnpflgiay vvsgtaatlt gfviaaihlk lrkkktyfqk
//
LOCUS       XP_009555247             294 aa            linear   VRT 09-MAR-2023
DEFINITION  protein CMSS1 isoform X1 [Cuculus canorus].
ACCESSION   XP_009555247
VERSION     XP_009555247.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556952.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..294
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..294
                     /product="protein CMSS1 isoform X1"
                     /calculated_mol_wt=33304
     Region          45..276
                     /region_name="P-loop containing Nucleoside Triphosphate
                     Hydrolases"
                     /note="Members of the P-loop NTPase domain superfamily are
                     characterized by a conserved nucleotide phosphate-binding
                     motif, also referred to as the Walker A motif
                     (GxxxxGK[S/T], where x is any residue), and the Walker B
                     motif (hhhh[D/E], where h is a...; cl38936"
                     /db_xref="CDD:476819"
     CDS             1..294
                     /gene="CMSS1"
                     /coded_by="XM_009556952.2:134..1018"
                     /db_xref="GeneID:104055777"
ORIGIN      
        1 mslstkrgsk gtglqhkrte kqsticlqqv svdpsddeai ekasdnrtaa rqdsdskppa
       61 akkrkqptec flsqpeekqe ttvkakkrkk kkisdileks apkpgvpadl qnllrqhfge
      121 nrsvieleel klsdscflpa ndlthsfssy lkeicpkwak lrknhkekks vvmlvicssa
      181 lrsleliksm tafkgdcrvl klfakhikik eqidmlekgv fhigvgtpgr vkalveqdgl
      241 clnstrymil dwnwrdqklr rmmdipeikk etidllemci iklcregsvk lglf
//
LOCUS       XP_053932906             282 aa            linear   VRT 09-MAR-2023
DEFINITION  protein CMSS1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053932906
VERSION     XP_053932906.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076931.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..282
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..282
                     /product="protein CMSS1 isoform X2"
                     /calculated_mol_wt=31934
     Region          33..264
                     /region_name="P-loop containing Nucleoside Triphosphate
                     Hydrolases"
                     /note="Members of the P-loop NTPase domain superfamily are
                     characterized by a conserved nucleotide phosphate-binding
                     motif, also referred to as the Walker A motif
                     (GxxxxGK[S/T], where x is any residue), and the Walker B
                     motif (hhhh[D/E], where h is a...; cl38936"
                     /db_xref="CDD:476819"
     CDS             1..282
                     /gene="CMSS1"
                     /coded_by="XM_054076931.1:78..926"
                     /db_xref="GeneID:104055777"
ORIGIN      
        1 mgdtleepww etpagtgssp dpsddeaiek asdnrtaarq dsdskppaak krkqptecfl
       61 sqpeekqett vkakkrkkkk isdileksap kpgvpadlqn llrqhfgenr svieleelkl
      121 sdscflpand lthsfssylk eicpkwaklr knhkekksvv mlvicssalr sleliksmta
      181 fkgdcrvlkl fakhikikeq idmlekgvfh igvgtpgrvk alveqdglcl nstrymildw
      241 nwrdqklrrm mdipeikket idllemciik lcregsvklg lf
//
LOCUS       XP_053932984             278 aa            linear   VRT 09-MAR-2023
DEFINITION  protein CMSS1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053932984
VERSION     XP_053932984.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077009.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..278
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..278
                     /product="protein CMSS1 isoform X3"
                     /calculated_mol_wt=31606
     Region          29..260
                     /region_name="P-loop containing Nucleoside Triphosphate
                     Hydrolases"
                     /note="Members of the P-loop NTPase domain superfamily are
                     characterized by a conserved nucleotide phosphate-binding
                     motif, also referred to as the Walker A motif
                     (GxxxxGK[S/T], where x is any residue), and the Walker B
                     motif (hhhh[D/E], where h is a...; cl38936"
                     /db_xref="CDD:476819"
     CDS             1..278
                     /gene="CMSS1"
                     /coded_by="XM_054077009.1:71..907"
                     /db_xref="GeneID:104055777"
ORIGIN      
        1 mgdtleepww etpagtdpsd deaiekasdn rtaarqdsds kppaakkrkq ptecflsqpe
       61 ekqettvkak krkkkkisdi leksapkpgv padlqnllrq hfgenrsvie leelklsdsc
      121 flpandlths fssylkeicp kwaklrknhk ekksvvmlvi cssalrslel iksmtafkgd
      181 crvlklfakh ikikeqidml ekgvfhigvg tpgrvkalve qdglclnstr ymildwnwrd
      241 qklrrmmdip eikketidll emciiklcre gsvklglf
//
LOCUS       XP_053933049             270 aa            linear   VRT 09-MAR-2023
DEFINITION  protein CMSS1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053933049
VERSION     XP_053933049.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077074.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..270
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..270
                     /product="protein CMSS1 isoform X4"
                     /calculated_mol_wt=30785
     Region          21..252
                     /region_name="P-loop containing Nucleoside Triphosphate
                     Hydrolases"
                     /note="Members of the P-loop NTPase domain superfamily are
                     characterized by a conserved nucleotide phosphate-binding
                     motif, also referred to as the Walker A motif
                     (GxxxxGK[S/T], where x is any residue), and the Walker B
                     motif (hhhh[D/E], where h is a...; cl38936"
                     /db_xref="CDD:476819"
     CDS             1..270
                     /gene="CMSS1"
                     /coded_by="XM_054077074.1:16..828"
                     /db_xref="GeneID:104055777"
ORIGIN      
        1 mtimfkktdp sddeaiekas dnrtaarqds dskppaakkr kqptecflsq peekqettvk
       61 akkrkkkkis dileksapkp gvpadlqnll rqhfgenrsv ieleelklsd scflpandlt
      121 hsfssylkei cpkwaklrkn hkekksvvml vicssalrsl eliksmtafk gdcrvlklfa
      181 khikikeqid mlekgvfhig vgtpgrvkal veqdglclns trymildwnw rdqklrrmmd
      241 ipeikketid llemciiklc regsvklglf
//
LOCUS       XP_053933112             269 aa            linear   VRT 09-MAR-2023
DEFINITION  protein CMSS1 isoform X5 [Cuculus canorus].
ACCESSION   XP_053933112
VERSION     XP_053933112.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077137.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..269
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..269
                     /product="protein CMSS1 isoform X5"
                     /calculated_mol_wt=30619
     Region          20..251
                     /region_name="P-loop containing Nucleoside Triphosphate
                     Hydrolases"
                     /note="Members of the P-loop NTPase domain superfamily are
                     characterized by a conserved nucleotide phosphate-binding
                     motif, also referred to as the Walker A motif
                     (GxxxxGK[S/T], where x is any residue), and the Walker B
                     motif (hhhh[D/E], where h is a...; cl38936"
                     /db_xref="CDD:476819"
     CDS             1..269
                     /gene="CMSS1"
                     /coded_by="XM_054077137.1:16..825"
                     /db_xref="GeneID:104055777"
ORIGIN      
        1 mshlkafdps ddeaiekasd nrtaarqdsd skppaakkrk qptecflsqp eekqettvka
       61 kkrkkkkisd ileksapkpg vpadlqnllr qhfgenrsvi eleelklsds cflpandlth
      121 sfssylkeic pkwaklrknh kekksvvmlv icssalrsle liksmtafkg dcrvlklfak
      181 hikikeqidm lekgvfhigv gtpgrvkalv eqdglclnst rymildwnwr dqklrrmmdi
      241 peikketidl lemciiklcr egsvklglf
//
LOCUS       XP_009558858             663 aa            linear   VRT 09-MAR-2023
DEFINITION  wee1-like protein kinase 2 [Cuculus canorus].
ACCESSION   XP_009558858
VERSION     XP_009558858.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560563.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..663
                     /product="wee1-like protein kinase 2"
                     /calculated_mol_wt=74676
     Region          210..482
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(217..220,223,225,238,240,272,288..291,338,342..343,
                     345,376..377)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270870"
     Region          541..>655
                     /region_name="Replication protein A, class 2b
                     aminoacyl-tRNA synthetases, and related proteins with
                     oligonucleotide/oligosaccharide (OB) fold."
                     /note="This superfamily includes two
                     oligonucleotide/oligosaccharide binding fold (OBF) domain
                     families. One of these contains the OBF domains of the
                     large (RPA1, 70kDa), middle (RPA2, RPA4, 32kDa) and small
                     (RPA3, 14 kDa) subunits of human heterotrimeric...;
                     cl09930"
                     /db_xref="CDD:471953"
     Site            order(547..550,575..577,597,599,621,630,641,644)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239942"
     Site            order(552..554,560,570,577..578,595..596,598,600,602,604,
                     618..619,627,629,631..632,645,647)
                     /site_type="other"
                     /note="ssDNA binding site [nucleotide binding]"
                     /db_xref="CDD:239942"
     Site            order(621,623,625,652)
                     /site_type="other"
                     /note="tetramer (dimer of dimers) interface [polypeptide
                     binding]"
                     /db_xref="CDD:239942"
     CDS             1..663
                     /gene="WEE2"
                     /coded_by="XM_009560563.2:16..2007"
                     /db_xref="GeneID:104058971"
ORIGIN      
        1 medwdnsddf iqqldfsscg eesedrsmhe edslsssppr sckfqkwqgs spllvtpqrk
       61 fseiflsrtk alvsptlnps pavskrrgnt etplhitwkk lqlydspytp ktllsktafp
      121 ssgtkfppkg frhprfipga elddsiqasl vninpftpes yrqtlflpns kqktrgelnd
      181 sdlrskikhe lpkkrcplke snmvsrykke flelekigvg efgsvykcik rldgcvyaik
      241 rskrplagss deqlalsevy ahavlghhph vvryysawae ddhmiiqney cnggslqdml
      301 lenaklgqyl petelkevll qvsmglkyih nsglvhldik psnifichkm avagpagqee
      361 sdsedefssg vvykigdlgh vtsitnpqve egdrrflane ilqeqycflp kadifalalt
      421 valaagtapl phngakwhhi regnmppipq klphpflell klmihpdpve rpsatalikh
      481 pvlrpsrgka vqlqkqlnve kcktamlerr ggsamwrrpv gqvlrqfvrh esetvgslvl
      541 ersmnrvqll grvgqdpimr qvdgknpvti fslatnemwr tpesdanqgg disqkttwhr
      601 isvfrpglrd vtyqyvkrga riyvegkidy geytdknnvr rqattiiadn viflsdggtk
      661 ekv
//
LOCUS       XP_053933360             443 aa            linear   VRT 09-MAR-2023
DEFINITION  DENN domain-containing protein 11 [Cuculus canorus].
ACCESSION   XP_053933360
VERSION     XP_053933360.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077385.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..443
                     /product="DENN domain-containing protein 11"
                     /calculated_mol_wt=49848
     Region          68..335
                     /region_name="DENND11"
                     /note="DENN domain-containing protein 11; pfam09804"
                     /db_xref="CDD:430838"
     CDS             1..443
                     /gene="DENND11"
                     /coded_by="XM_054077385.1:16..1347"
                     /db_xref="GeneID:104058948"
ORIGIN      
        1 mveradeapl lfwaegpavs apppaaeasg gaggrrlgws aapwdgagpa eaaappraea
       61 eedqivavfv vtfdprtgnm vewclpqdid legvefksma sgshkiqsdf iyfrkglcfg
      121 lacfanmpve selergarmk svgilspsyt llyrymhfle nqvrhqlemp ghyshleafy
      181 ddkkgvlpdn kgtptsqqpv hwlpsihrym ypemkithpa gcmsqfikff geqilvlwkf
      241 allrkrilif spppvgvvcy rvycccclan vslpglggtv peskpffyvn vadiemlete
      301 vsyvacttek ifeekrdlyd vyvdnqnvkt hhehlqpllk insadkekyr rlndqrqmlm
      361 ysqevgedcs sceedlfilf fmeqnnrifq tlmevsasqd ktltadharg mgldpqgdrs
      421 flmdllevyg idvmlvidnp cct
//
LOCUS       XP_053933487             424 aa            linear   VRT 09-MAR-2023
DEFINITION  acylglycerol kinase, mitochondrial [Cuculus canorus].
ACCESSION   XP_053933487
VERSION     XP_053933487.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077512.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..424
                     /product="acylglycerol kinase, mitochondrial"
                     /calculated_mol_wt=47772
     Region          65..198
                     /region_name="DAGK_cat"
                     /note="Diacylglycerol kinase catalytic domain; pfam00781"
                     /db_xref="CDD:425868"
     Region          209..422
                     /region_name="AGK_C"
                     /note="Acylglycerol kinase C-terminal; pfam19712"
                     /db_xref="CDD:466156"
     CDS             1..424
                     /gene="AGK"
                     /coded_by="XM_054077512.1:65..1339"
                     /db_xref="GeneID:104058970"
ORIGIN      
        1 maragrvlaa lrnhwkkttl gvcllswggn wlygkhcdnl lrraacqeaq afgnqlipss
       61 vplkkatvfl npaackgkar nlfeknaapi lhlsgmdvtv vktdyegqak kllelmentd
      121 liiiaggdgt vqevitgllr radeavfski pigfiplgkt ctlsqtlype stnqvyhiin
      181 atlailkget vpldvlqikg ekeqpvfavt glrwgsyrda gvkvskywyl gplktraahf
      241 fstfkewpqk rqaalmylgp terppeepde kpsrpplyvr lyrrlrlyws pppkeipqev
      301 apedweelkl stielsiatr nrqldltrte dfmdiciead tvtkgqfvnr gtqkmrdphm
      361 cpegsqciqa srcilqlpeg tegsfgidne eyeampvevk llprklrffc dprmreqmfh
      421 aavq
//
LOCUS       XP_053933603             481 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA binding protein fox-1 homolog 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053933603
VERSION     XP_053933603.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077628.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..481
                     /product="RNA binding protein fox-1 homolog 2 isoform X1"
                     /calculated_mol_wt=51382
     Region          187..262
                     /region_name="RRM_FOX1_like"
                     /note="RNA recognition motif (RRM) found in vertebrate RNA
                     binding protein fox-1 homologs and similar proteins;
                     cd12407"
                     /db_xref="CDD:409841"
     Site            order(188,190,192..197,217..221,223..228,230,254,259..262)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:409841"
     Region          327..>384
                     /region_name="Fox-1_C"
                     /note="Calcitonin gene-related peptide regulator C
                     terminal; pfam12414"
                     /db_xref="CDD:463568"
     CDS             1..481
                     /gene="RBFOX2"
                     /coded_by="XM_054077628.1:263..1708"
                     /db_xref="GeneID:104065850"
ORIGIN      
        1 maeggqppqq qqqqqqqpql lpggggaarg vkrepeleqp mpggdgaegg hskrlrteae
       61 aegagmqnep ltsgyhgypa rdnqgnqepa atpdamvqpf ttipfppppq ngipteygvp
      121 htqdyagqts ehnltlygst qphgeqstnt astqngslaq teggaqtdgq qsqtqssent
      181 eskstpkrlh vsnipfrfrd pdlrqmfgqf gkildveiif nergskgfgf vtfensadad
      241 rareklhgtv vegrkievnn atarvmtnkk mvtpyangwk lspvvgavyg pelyaassfq
      301 advslgndaa vplsgrggin tyipliipgf pyptaattaa afrgahlrgr grtvygavra
      361 vpptaipayp gvvyqdgfyg adlylteeml tsrskslsgv svpfsditdg vdtqptdths
      421 lllqqqpqpl qplqqltamv magctqqilt mplplplate lalwrvytev atadlpptev
      481 t
//
LOCUS       XP_053933680             480 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA binding protein fox-1 homolog 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053933680
VERSION     XP_053933680.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077705.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..480
                     /product="RNA binding protein fox-1 homolog 2 isoform X2"
                     /calculated_mol_wt=51254
     Region          186..261
                     /region_name="RRM_FOX1_like"
                     /note="RNA recognition motif (RRM) found in vertebrate RNA
                     binding protein fox-1 homologs and similar proteins;
                     cd12407"
                     /db_xref="CDD:409841"
     Site            order(187,189,191..196,216..220,222..227,229,253,258..261)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:409841"
     Region          326..>383
                     /region_name="Fox-1_C"
                     /note="Calcitonin gene-related peptide regulator C
                     terminal; pfam12414"
                     /db_xref="CDD:463568"
     CDS             1..480
                     /gene="RBFOX2"
                     /coded_by="XM_054077705.1:263..1705"
                     /db_xref="GeneID:104065850"
ORIGIN      
        1 maeggqppqq qqqqqqqpql lpggggaarg vkrepeleqp mpggdgaegg hskrlrteae
       61 aegagmqnep ltsgyhgypa rdnqgnqepa atpdamvqpf ttipfppppq ngipteygvp
      121 htqdyagqts ehnltlygst qphgeqstnt astqngslat eggaqtdgqq sqtqssente
      181 skstpkrlhv snipfrfrdp dlrqmfgqfg kildveiifn ergskgfgfv tfensadadr
      241 areklhgtvv egrkievnna tarvmtnkkm vtpyangwkl spvvgavygp elyaassfqa
      301 dvslgndaav plsgrggint yipliipgfp yptaattaaa frgahlrgrg rtvygavrav
      361 pptaipaypg vvyqdgfyga dlylteemlt srskslsgvs vpfsditdgv dtqptdthsl
      421 llqqqpqplq plqqltamvm agctqqiltm plplplatel alwrvyteva tadlpptevt
//
LOCUS       XP_053933757             463 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA binding protein fox-1 homolog 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053933757
VERSION     XP_053933757.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077782.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..463
                     /product="RNA binding protein fox-1 homolog 2 isoform X3"
                     /calculated_mol_wt=49494
     Region          187..262
                     /region_name="RRM_FOX1_like"
                     /note="RNA recognition motif (RRM) found in vertebrate RNA
                     binding protein fox-1 homologs and similar proteins;
                     cd12407"
                     /db_xref="CDD:409841"
     Site            order(188,190,192..197,217..221,223..228,230,254,259..262)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:409841"
     Region          309..>366
                     /region_name="Fox-1_C"
                     /note="Calcitonin gene-related peptide regulator C
                     terminal; pfam12414"
                     /db_xref="CDD:463568"
     CDS             1..463
                     /gene="RBFOX2"
                     /coded_by="XM_054077782.1:263..1654"
                     /db_xref="GeneID:104065850"
ORIGIN      
        1 maeggqppqq qqqqqqqpql lpggggaarg vkrepeleqp mpggdgaegg hskrlrteae
       61 aegagmqnep ltsgyhgypa rdnqgnqepa atpdamvqpf ttipfppppq ngipteygvp
      121 htqdyagqts ehnltlygst qphgeqstnt astqngslaq teggaqtdgq qsqtqssent
      181 eskstpkrlh vsnipfrfrd pdlrqmfgqf gkildveiif nergskgfgf vtfensadad
      241 rareklhgtv vegrkievnn atarvmtnkk mvtpyanass fqadvslgnd aavplsgrgg
      301 intyipliip gfpyptaatt aaafrgahlr grgrtvygav ravpptaipa ypgvvyqdgf
      361 ygadlyltee mltsrsksls gvsvpfsdit dgvdtqptdt hslllqqqpq plqplqqlta
      421 mvmagctqqi ltmplplpla telalwrvyt evatadlppt evt
//
LOCUS       XP_053933837             453 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA binding protein fox-1 homolog 2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053933837
VERSION     XP_053933837.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077862.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..453
                     /product="RNA binding protein fox-1 homolog 2 isoform X4"
                     /calculated_mol_wt=47711
     Region          187..262
                     /region_name="RRM_FOX1_like"
                     /note="RNA recognition motif (RRM) found in vertebrate RNA
                     binding protein fox-1 homologs and similar proteins;
                     cd12407"
                     /db_xref="CDD:409841"
     Site            order(188,190,192..197,217..221,223..228,230,254,259..262)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:409841"
     Region          327..425
                     /region_name="Fox-1_C"
                     /note="Calcitonin gene-related peptide regulator C
                     terminal; pfam12414"
                     /db_xref="CDD:463568"
     CDS             1..453
                     /gene="RBFOX2"
                     /coded_by="XM_054077862.1:263..1624"
                     /db_xref="GeneID:104065850"
ORIGIN      
        1 maeggqppqq qqqqqqqpql lpggggaarg vkrepeleqp mpggdgaegg hskrlrteae
       61 aegagmqnep ltsgyhgypa rdnqgnqepa atpdamvqpf ttipfppppq ngipteygvp
      121 htqdyagqts ehnltlygst qphgeqstnt astqngslaq teggaqtdgq qsqtqssent
      181 eskstpkrlh vsnipfrfrd pdlrqmfgqf gkildveiif nergskgfgf vtfensadad
      241 rareklhgtv vegrkievnn atarvmtnkk mvtpyangwk lspvvgavyg pelyaassfq
      301 advslgndaa vplsgrggin tyipliipgf pyptaattaa afrgahlrgr grtvygavra
      361 vpptaipayp givlqepiis akipqggyaa yryaqpatat aataaaaaaa aysdgygrvy
      421 tadpyhalap aasygvgava slyrggysrf apy
//
LOCUS       XP_053933917             452 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA binding protein fox-1 homolog 2 isoform X5 [Cuculus canorus].
ACCESSION   XP_053933917
VERSION     XP_053933917.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077942.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..452
                     /product="RNA binding protein fox-1 homolog 2 isoform X5"
                     /calculated_mol_wt=47672
     Region          187..262
                     /region_name="RRM_FOX1_like"
                     /note="RNA recognition motif (RRM) found in vertebrate RNA
                     binding protein fox-1 homologs and similar proteins;
                     cd12407"
                     /db_xref="CDD:409841"
     Site            order(188,190,192..197,217..221,223..228,230,254,259..262)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:409841"
     Region          327..424
                     /region_name="Fox-1_C"
                     /note="Calcitonin gene-related peptide regulator C
                     terminal; pfam12414"
                     /db_xref="CDD:463568"
     CDS             1..452
                     /gene="RBFOX2"
                     /coded_by="XM_054077942.1:263..1621"
                     /db_xref="GeneID:104065850"
ORIGIN      
        1 maeggqppqq qqqqqqqpql lpggggaarg vkrepeleqp mpggdgaegg hskrlrteae
       61 aegagmqnep ltsgyhgypa rdnqgnqepa atpdamvqpf ttipfppppq ngipteygvp
      121 htqdyagqts ehnltlygst qphgeqstnt astqngslaq teggaqtdgq qsqtqssent
      181 eskstpkrlh vsnipfrfrd pdlrqmfgqf gkildveiif nergskgfgf vtfensadad
      241 rareklhgtv vegrkievnn atarvmtnkk mvtpyangwk lspvvgavyg pelyaassfq
      301 advslgndaa vplsgrggin tyipliipgf pyptaattaa afrgahlrgr grtvygavra
      361 vpptaipayp gvvyqdgfyg adlyggyaay ryaqpatata ataaaaaaaa ysdgygrvyt
      421 adpyhalapa asygvgavas lyrggysrfa py
//
LOCUS       XP_053933995             451 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA binding protein fox-1 homolog 2 isoform X6 [Cuculus canorus].
ACCESSION   XP_053933995
VERSION     XP_053933995.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078020.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..451
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..451
                     /product="RNA binding protein fox-1 homolog 2 isoform X6"
                     /calculated_mol_wt=47544
     Region          186..261
                     /region_name="RRM_FOX1_like"
                     /note="RNA recognition motif (RRM) found in vertebrate RNA
                     binding protein fox-1 homologs and similar proteins;
                     cd12407"
                     /db_xref="CDD:409841"
     Site            order(187,189,191..196,216..220,222..227,229,253,258..261)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:409841"
     Region          326..423
                     /region_name="Fox-1_C"
                     /note="Calcitonin gene-related peptide regulator C
                     terminal; pfam12414"
                     /db_xref="CDD:463568"
     CDS             1..451
                     /gene="RBFOX2"
                     /coded_by="XM_054078020.1:263..1618"
                     /db_xref="GeneID:104065850"
ORIGIN      
        1 maeggqppqq qqqqqqqpql lpggggaarg vkrepeleqp mpggdgaegg hskrlrteae
       61 aegagmqnep ltsgyhgypa rdnqgnqepa atpdamvqpf ttipfppppq ngipteygvp
      121 htqdyagqts ehnltlygst qphgeqstnt astqngslat eggaqtdgqq sqtqssente
      181 skstpkrlhv snipfrfrdp dlrqmfgqfg kildveiifn ergskgfgfv tfensadadr
      241 areklhgtvv egrkievnna tarvmtnkkm vtpyangwkl spvvgavygp elyaassfqa
      301 dvslgndaav plsgrggint yipliipgfp yptaattaaa frgahlrgrg rtvygavrav
      361 pptaipaypg vvyqdgfyga dlyggyaayr yaqpatataa taaaaaaaay sdgygrvyta
      421 dpyhalapaa sygvgavasl yrggysrfap y
//
LOCUS       XP_053934067             450 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA binding protein fox-1 homolog 2 isoform X7 [Cuculus canorus].
ACCESSION   XP_053934067
VERSION     XP_053934067.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078092.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..450
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..450
                     /product="RNA binding protein fox-1 homolog 2 isoform X7"
                     /calculated_mol_wt=47964
     Region          187..>226
                     /region_name="RRM_SF"
                     /note="RNA recognition motif (RRM) superfamily; cl17169"
                     /db_xref="CDD:473069"
     Region          296..>353
                     /region_name="Fox-1_C"
                     /note="Calcitonin gene-related peptide regulator C
                     terminal; pfam12414"
                     /db_xref="CDD:463568"
     CDS             1..450
                     /gene="RBFOX2"
                     /coded_by="XM_054078092.1:263..1615"
                     /db_xref="GeneID:104065850"
ORIGIN      
        1 maeggqppqq qqqqqqqpql lpggggaarg vkrepeleqp mpggdgaegg hskrlrteae
       61 aegagmqnep ltsgyhgypa rdnqgnqepa atpdamvqpf ttipfppppq ngipteygvp
      121 htqdyagqts ehnltlygst qphgeqstnt astqngslaq teggaqtdgq qsqtqssent
      181 eskstpkrlh vsnipfrfrd pdlrqmfgqf gkildveiif nergskvnna tarvmtnkkm
      241 vtpyangwkl spvvgavygp elyaassfqa dvslgndaav plsgrggint yipliipgfp
      301 yptaattaaa frgahlrgrg rtvygavrav pptaipaypg vvyqdgfyga dlylteemlt
      361 srskslsgvs vpfsditdgv dtqptdthsl llqqqpqplq plqqltamvm agctqqiltm
      421 plplplatel alwrvyteva tadlpptevt
//
LOCUS       XP_053934138             449 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA binding protein fox-1 homolog 2 isoform X8 [Cuculus canorus].
ACCESSION   XP_053934138
VERSION     XP_053934138.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078163.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..449
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..449
                     /product="RNA binding protein fox-1 homolog 2 isoform X8"
                     /calculated_mol_wt=47835
     Region          186..>225
                     /region_name="RRM_SF"
                     /note="RNA recognition motif (RRM) superfamily; cl17169"
                     /db_xref="CDD:473069"
     Region          295..>352
                     /region_name="Fox-1_C"
                     /note="Calcitonin gene-related peptide regulator C
                     terminal; pfam12414"
                     /db_xref="CDD:463568"
     CDS             1..449
                     /gene="RBFOX2"
                     /coded_by="XM_054078163.1:263..1612"
                     /db_xref="GeneID:104065850"
ORIGIN      
        1 maeggqppqq qqqqqqqpql lpggggaarg vkrepeleqp mpggdgaegg hskrlrteae
       61 aegagmqnep ltsgyhgypa rdnqgnqepa atpdamvqpf ttipfppppq ngipteygvp
      121 htqdyagqts ehnltlygst qphgeqstnt astqngslat eggaqtdgqq sqtqssente
      181 skstpkrlhv snipfrfrdp dlrqmfgqfg kildveiifn ergskvnnat arvmtnkkmv
      241 tpyangwkls pvvgavygpe lyaassfqad vslgndaavp lsgrgginty ipliipgfpy
      301 ptaattaaaf rgahlrgrgr tvygavravp ptaipaypgv vyqdgfygad lylteemlts
      361 rskslsgvsv pfsditdgvd tqptdthsll lqqqpqplqp lqqltamvma gctqqiltmp
      421 lplplatela lwrvytevat adlpptevt
//
LOCUS       XP_053934220             442 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA binding protein fox-1 homolog 2 isoform X9 [Cuculus canorus].
ACCESSION   XP_053934220
VERSION     XP_053934220.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078245.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..442
                     /product="RNA binding protein fox-1 homolog 2 isoform X9"
                     /calculated_mol_wt=47152
     Region          187..262
                     /region_name="RRM_FOX1_like"
                     /note="RNA recognition motif (RRM) found in vertebrate RNA
                     binding protein fox-1 homologs and similar proteins;
                     cd12407"
                     /db_xref="CDD:409841"
     Site            order(188,190,192..197,217..221,223..228,230,254,259..262)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:409841"
     Region          327..>372
                     /region_name="Fox-1_C"
                     /note="Calcitonin gene-related peptide regulator C
                     terminal; pfam12414"
                     /db_xref="CDD:463568"
     CDS             1..442
                     /gene="RBFOX2"
                     /coded_by="XM_054078245.1:263..1591"
                     /db_xref="GeneID:104065850"
ORIGIN      
        1 maeggqppqq qqqqqqqpql lpggggaarg vkrepeleqp mpggdgaegg hskrlrteae
       61 aegagmqnep ltsgyhgypa rdnqgnqepa atpdamvqpf ttipfppppq ngipteygvp
      121 htqdyagqts ehnltlygst qphgeqstnt astqngslaq teggaqtdgq qsqtqssent
      181 eskstpkrlh vsnipfrfrd pdlrqmfgqf gkildveiif nergskgfgf vtfensadad
      241 rareklhgtv vegrkievnn atarvmtnkk mvtpyangwk lspvvgavyg pelyaassfq
      301 advslgndaa vplsgrggin tyipliipgf pyptaattaa afrgahlrgr grtvygavra
      361 vpptaipayp gvdtqptdth slllqqqpqp lqplqqltam vmagctqqil tmplplplat
      421 elalwrvyte vatadlppte vt
//
LOCUS       XP_053934268             432 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA binding protein fox-1 homolog 2 isoform X10 [Cuculus canorus].
ACCESSION   XP_053934268
VERSION     XP_053934268.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078293.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..432
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..432
                     /product="RNA binding protein fox-1 homolog 2 isoform X10"
                     /calculated_mol_wt=46075
     Region          187..>226
                     /region_name="RRM_SF"
                     /note="RNA recognition motif (RRM) superfamily; cl17169"
                     /db_xref="CDD:473069"
     Region          278..>335
                     /region_name="Fox-1_C"
                     /note="Calcitonin gene-related peptide regulator C
                     terminal; pfam12414"
                     /db_xref="CDD:463568"
     CDS             1..432
                     /gene="RBFOX2"
                     /coded_by="XM_054078293.1:263..1561"
                     /db_xref="GeneID:104065850"
ORIGIN      
        1 maeggqppqq qqqqqqqpql lpggggaarg vkrepeleqp mpggdgaegg hskrlrteae
       61 aegagmqnep ltsgyhgypa rdnqgnqepa atpdamvqpf ttipfppppq ngipteygvp
      121 htqdyagqts ehnltlygst qphgeqstnt astqngslaq teggaqtdgq qsqtqssent
      181 eskstpkrlh vsnipfrfrd pdlrqmfgqf gkildveiif nergskvnna tarvmtnkkm
      241 vtpyanassf qadvslgnda avplsgrggi ntyipliipg fpyptaatta aafrgahlrg
      301 rgrtvygavr avpptaipay pgvvyqdgfy gadlylteem ltsrskslsg vsvpfsditd
      361 gvdtqptdth slllqqqpqp lqplqqltam vmagctqqil tmplplplat elalwrvyte
      421 vatadlppte vt
//
LOCUS       XP_053934353             421 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA binding protein fox-1 homolog 2 isoform X11 [Cuculus canorus].
ACCESSION   XP_053934353
VERSION     XP_053934353.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078378.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..421
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..421
                     /product="RNA binding protein fox-1 homolog 2 isoform X11"
                     /calculated_mol_wt=44253
     Region          187..>226
                     /region_name="RRM_SF"
                     /note="RNA recognition motif (RRM) superfamily; cl17169"
                     /db_xref="CDD:473069"
     Region          296..393
                     /region_name="Fox-1_C"
                     /note="Calcitonin gene-related peptide regulator C
                     terminal; pfam12414"
                     /db_xref="CDD:463568"
     CDS             1..421
                     /gene="RBFOX2"
                     /coded_by="XM_054078378.1:263..1528"
                     /db_xref="GeneID:104065850"
ORIGIN      
        1 maeggqppqq qqqqqqqpql lpggggaarg vkrepeleqp mpggdgaegg hskrlrteae
       61 aegagmqnep ltsgyhgypa rdnqgnqepa atpdamvqpf ttipfppppq ngipteygvp
      121 htqdyagqts ehnltlygst qphgeqstnt astqngslaq teggaqtdgq qsqtqssent
      181 eskstpkrlh vsnipfrfrd pdlrqmfgqf gkildveiif nergskvnna tarvmtnkkm
      241 vtpyangwkl spvvgavygp elyaassfqa dvslgndaav plsgrggint yipliipgfp
      301 yptaattaaa frgahlrgrg rtvygavrav pptaipaypg vvyqdgfyga dlyggyaayr
      361 yaqpatataa taaaaaaaay sdgygrvyta dpyhalapaa sygvgavasl yrggysrfap
      421 y
//
LOCUS       XP_053934440             421 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA binding protein fox-1 homolog 2 isoform X12 [Cuculus canorus].
ACCESSION   XP_053934440
VERSION     XP_053934440.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078465.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..421
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..421
                     /product="RNA binding protein fox-1 homolog 2 isoform X12"
                     /calculated_mol_wt=45162
     Region          127..202
                     /region_name="RRM_FOX1_like"
                     /note="RNA recognition motif (RRM) found in vertebrate RNA
                     binding protein fox-1 homologs and similar proteins;
                     cd12407"
                     /db_xref="CDD:409841"
     Site            order(128,130,132..137,157..161,163..168,170,194,199..202)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:409841"
     Region          267..>324
                     /region_name="Fox-1_C"
                     /note="Calcitonin gene-related peptide regulator C
                     terminal; pfam12414"
                     /db_xref="CDD:463568"
     CDS             1..421
                     /gene="RBFOX2"
                     /coded_by="XM_054078465.1:46..1311"
                     /db_xref="GeneID:104065850"
ORIGIN      
        1 mpflvgerks isqassdeel esaegnqepa atpdamvqpf ttipfppppq ngipteygvp
       61 htqdyagqts ehnltlygst qphgeqstnt astqngslaq teggaqtdgq qsqtqssent
      121 eskstpkrlh vsnipfrfrd pdlrqmfgqf gkildveiif nergskgfgf vtfensadad
      181 rareklhgtv vegrkievnn atarvmtnkk mvtpyangwk lspvvgavyg pelyaassfq
      241 advslgndaa vplsgrggin tyipliipgf pyptaattaa afrgahlrgr grtvygavra
      301 vpptaipayp gvvyqdgfyg adlylteeml tsrskslsgv svpfsditdg vdtqptdths
      361 lllqqqpqpl qplqqltamv magctqqilt mplplplate lalwrvytev atadlpptev
      421 t
//
LOCUS       XP_053934520             420 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA binding protein fox-1 homolog 2 isoform X13 [Cuculus canorus].
ACCESSION   XP_053934520
VERSION     XP_053934520.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078545.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..420
                     /product="RNA binding protein fox-1 homolog 2 isoform X13"
                     /calculated_mol_wt=44125
     Region          186..>225
                     /region_name="RRM_SF"
                     /note="RNA recognition motif (RRM) superfamily; cl17169"
                     /db_xref="CDD:473069"
     Region          295..392
                     /region_name="Fox-1_C"
                     /note="Calcitonin gene-related peptide regulator C
                     terminal; pfam12414"
                     /db_xref="CDD:463568"
     CDS             1..420
                     /gene="RBFOX2"
                     /coded_by="XM_054078545.1:263..1525"
                     /db_xref="GeneID:104065850"
ORIGIN      
        1 maeggqppqq qqqqqqqpql lpggggaarg vkrepeleqp mpggdgaegg hskrlrteae
       61 aegagmqnep ltsgyhgypa rdnqgnqepa atpdamvqpf ttipfppppq ngipteygvp
      121 htqdyagqts ehnltlygst qphgeqstnt astqngslat eggaqtdgqq sqtqssente
      181 skstpkrlhv snipfrfrdp dlrqmfgqfg kildveiifn ergskvnnat arvmtnkkmv
      241 tpyangwkls pvvgavygpe lyaassfqad vslgndaavp lsgrgginty ipliipgfpy
      301 ptaattaaaf rgahlrgrgr tvygavravp ptaipaypgv vyqdgfygad lyggyaayry
      361 aqpatataat aaaaaaaays dgygrvytad pyhalapaas ygvgavasly rggysrfapy
//
LOCUS       XP_053934604             413 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA binding protein fox-1 homolog 2 isoform X14 [Cuculus canorus].
ACCESSION   XP_053934604
VERSION     XP_053934604.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078629.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..413
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..413
                     /product="RNA binding protein fox-1 homolog 2 isoform X14"
                     /calculated_mol_wt=44718
     Region          119..194
                     /region_name="RRM_FOX1_like"
                     /note="RNA recognition motif (RRM) found in vertebrate RNA
                     binding protein fox-1 homologs and similar proteins;
                     cd12407"
                     /db_xref="CDD:409841"
     Site            order(120,122,124..129,149..153,155..160,162,186,191..194)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:409841"
     Region          259..>316
                     /region_name="Fox-1_C"
                     /note="Calcitonin gene-related peptide regulator C
                     terminal; pfam12414"
                     /db_xref="CDD:463568"
     CDS             1..413
                     /gene="RBFOX2"
                     /coded_by="XM_054078629.1:16..1257"
                     /db_xref="GeneID:104065850"
ORIGIN      
        1 mafrfwdrgy rfwqtegnqe paatpdamvq pfttipfppp pqngipteyg vphtqdyagq
       61 tsehnltlyg stqphgeqst ntastqngsl aqteggaqtd gqqsqtqsse nteskstpkr
      121 lhvsnipfrf rdpdlrqmfg qfgkildvei ifnergskgf gfvtfensad adrareklhg
      181 tvvegrkiev nnatarvmtn kkmvtpyang wklspvvgav ygpelyaass fqadvslgnd
      241 aavplsgrgg intyipliip gfpyptaatt aaafrgahlr grgrtvygav ravpptaipa
      301 ypgvvyqdgf ygadlyltee mltsrsksls gvsvpfsdit dgvdtqptdt hslllqqqpq
      361 plqplqqlta mvmagctqqi ltmplplpla telalwrvyt evatadlppt evt
//
LOCUS       XP_053934684             412 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA binding protein fox-1 homolog 2 isoform X15 [Cuculus canorus].
ACCESSION   XP_053934684
VERSION     XP_053934684.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078709.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..412
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..412
                     /product="RNA binding protein fox-1 homolog 2 isoform X15"
                     /calculated_mol_wt=44381
     Region          118..193
                     /region_name="RRM_FOX1_like"
                     /note="RNA recognition motif (RRM) found in vertebrate RNA
                     binding protein fox-1 homologs and similar proteins;
                     cd12407"
                     /db_xref="CDD:409841"
     Site            order(119,121,123..128,148..152,154..159,161,185,190..193)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:409841"
     Region          258..>315
                     /region_name="Fox-1_C"
                     /note="Calcitonin gene-related peptide regulator C
                     terminal; pfam12414"
                     /db_xref="CDD:463568"
     CDS             1..412
                     /gene="RBFOX2"
                     /coded_by="XM_054078709.1:362..1600"
                     /db_xref="GeneID:104065850"
ORIGIN      
        1 mygvycmdyq ypvvqgnqep aatpdamvqp fttipfpppp qngipteygv phtqdyagqt
       61 sehnltlygs tqphgeqstn tastqngsla qteggaqtdg qqsqtqssen teskstpkrl
      121 hvsnipfrfr dpdlrqmfgq fgkildveii fnergskgfg fvtfensada drareklhgt
      181 vvegrkievn natarvmtnk kmvtpyangw klspvvgavy gpelyaassf qadvslgnda
      241 avplsgrggi ntyipliipg fpyptaatta aafrgahlrg rgrtvygavr avpptaipay
      301 pgvvyqdgfy gadlylteem ltsrskslsg vsvpfsditd gvdtqptdth slllqqqpqp
      361 lqplqqltam vmagctqqil tmplplplat elalwrvyte vatadlppte vt
//
LOCUS       XP_053934769             411 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA binding protein fox-1 homolog 2 isoform X16 [Cuculus canorus].
ACCESSION   XP_053934769
VERSION     XP_053934769.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078794.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..411
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..411
                     /product="RNA binding protein fox-1 homolog 2 isoform X16"
                     /calculated_mol_wt=44019
     Region          117..192
                     /region_name="RRM_FOX1_like"
                     /note="RNA recognition motif (RRM) found in vertebrate RNA
                     binding protein fox-1 homologs and similar proteins;
                     cd12407"
                     /db_xref="CDD:409841"
     Site            order(118,120,122..127,147..151,153..158,160,184,189..192)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:409841"
     Region          257..>314
                     /region_name="Fox-1_C"
                     /note="Calcitonin gene-related peptide regulator C
                     terminal; pfam12414"
                     /db_xref="CDD:463568"
     CDS             1..411
                     /gene="RBFOX2"
                     /coded_by="XM_054078794.1:16..1251"
                     /db_xref="GeneID:104065850"
ORIGIN      
        1 mngiafcsad fscmgnqepa atpdamvqpf ttipfppppq ngipteygvp htqdyagqts
       61 ehnltlygst qphgeqstnt astqngslaq teggaqtdgq qsqtqssent eskstpkrlh
      121 vsnipfrfrd pdlrqmfgqf gkildveiif nergskgfgf vtfensadad rareklhgtv
      181 vegrkievnn atarvmtnkk mvtpyangwk lspvvgavyg pelyaassfq advslgndaa
      241 vplsgrggin tyipliipgf pyptaattaa afrgahlrgr grtvygavra vpptaipayp
      301 gvvyqdgfyg adlylteeml tsrskslsgv svpfsditdg vdtqptdths lllqqqpqpl
      361 qplqqltamv magctqqilt mplplplate lalwrvytev atadlpptev t
//
LOCUS       XP_053934841             406 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA binding protein fox-1 homolog 2 isoform X17 [Cuculus canorus].
ACCESSION   XP_053934841
VERSION     XP_053934841.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078866.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..406
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..406
                     /product="RNA binding protein fox-1 homolog 2 isoform X17"
                     /calculated_mol_wt=43644
     Region          112..187
                     /region_name="RRM_FOX1_like"
                     /note="RNA recognition motif (RRM) found in vertebrate RNA
                     binding protein fox-1 homologs and similar proteins;
                     cd12407"
                     /db_xref="CDD:409841"
     Site            order(113,115,117..122,142..146,148..153,155,179,184..187)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:409841"
     Region          252..>309
                     /region_name="Fox-1_C"
                     /note="Calcitonin gene-related peptide regulator C
                     terminal; pfam12414"
                     /db_xref="CDD:463568"
     CDS             1..406
                     /gene="RBFOX2"
                     /coded_by="XM_054078866.1:121..1341"
                     /db_xref="GeneID:104065850"
ORIGIN      
        1 mekkkmvtqg nqepaatpda mvqpfttipf ppppqngipt eygvphtqdy agqtsehnlt
       61 lygstqphge qstntastqn gslaqtegga qtdgqqsqtq ssenteskst pkrlhvsnip
      121 frfrdpdlrq mfgqfgkild veiifnergs kgfgfvtfen sadadrarek lhgtvvegrk
      181 ievnnatarv mtnkkmvtpy angwklspvv gavygpelya assfqadvsl gndaavplsg
      241 rggintyipl iipgfpypta attaaafrga hlrgrgrtvy gavravppta ipaypgvvyq
      301 dgfygadlyl teemltsrsk slsgvsvpfs ditdgvdtqp tdthslllqq qpqplqplqq
      361 ltamvmagct qqiltmplpl platelalwr vytevatadl pptevt
//
LOCUS       XP_053934909             405 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA binding protein fox-1 homolog 2 isoform X18 [Cuculus canorus].
ACCESSION   XP_053934909
VERSION     XP_053934909.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078934.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..405
                     /product="RNA binding protein fox-1 homolog 2 isoform X18"
                     /calculated_mol_wt=43368
     Region          111..186
                     /region_name="RRM_FOX1_like"
                     /note="RNA recognition motif (RRM) found in vertebrate RNA
                     binding protein fox-1 homologs and similar proteins;
                     cd12407"
                     /db_xref="CDD:409841"
     Site            order(112,114,116..121,141..145,147..152,154,178,183..186)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:409841"
     Region          251..>308
                     /region_name="Fox-1_C"
                     /note="Calcitonin gene-related peptide regulator C
                     terminal; pfam12414"
                     /db_xref="CDD:463568"
     CDS             1..405
                     /gene="RBFOX2"
                     /coded_by="XM_054078934.1:92..1309"
                     /db_xref="GeneID:104065850"
ORIGIN      
        1 mqllaspsgn qepaatpdam vqpfttipfp pppqngipte ygvphtqdya gqtsehnltl
       61 ygstqphgeq stntastqng slaqteggaq tdgqqsqtqs senteskstp krlhvsnipf
      121 rfrdpdlrqm fgqfgkildv eiifnergsk gfgfvtfens adadrarekl hgtvvegrki
      181 evnnatarvm tnkkmvtpya ngwklspvvg avygpelyaa ssfqadvslg ndaavplsgr
      241 ggintyipli ipgfpyptaa ttaaafrgah lrgrgrtvyg avravpptai paypgvvyqd
      301 gfygadlylt eemltsrsks lsgvsvpfsd itdgvdtqpt dthslllqqq pqplqplqql
      361 tamvmagctq qiltmplplp latelalwrv ytevatadlp ptevt
//
LOCUS       XP_053934977             402 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA binding protein fox-1 homolog 2 isoform X19 [Cuculus canorus].
ACCESSION   XP_053934977
VERSION     XP_053934977.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079002.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..402
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..402
                     /product="RNA binding protein fox-1 homolog 2 isoform X19"
                     /calculated_mol_wt=43265
     Region          108..183
                     /region_name="RRM_FOX1_like"
                     /note="RNA recognition motif (RRM) found in vertebrate RNA
                     binding protein fox-1 homologs and similar proteins;
                     cd12407"
                     /db_xref="CDD:409841"
     Site            order(109,111,113..118,138..142,144..149,151,175,180..183)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:409841"
     Region          248..>305
                     /region_name="Fox-1_C"
                     /note="Calcitonin gene-related peptide regulator C
                     terminal; pfam12414"
                     /db_xref="CDD:463568"
     CDS             1..402
                     /gene="RBFOX2"
                     /coded_by="XM_054079002.1:121..1329"
                     /db_xref="GeneID:104065850"
ORIGIN      
        1 mmylwgnqep aatpdamvqp fttipfpppp qngipteygv phtqdyagqt sehnltlygs
       61 tqphgeqstn tastqngsla qteggaqtdg qqsqtqssen teskstpkrl hvsnipfrfr
      121 dpdlrqmfgq fgkildveii fnergskgfg fvtfensada drareklhgt vvegrkievn
      181 natarvmtnk kmvtpyangw klspvvgavy gpelyaassf qadvslgnda avplsgrggi
      241 ntyipliipg fpyptaatta aafrgahlrg rgrtvygavr avpptaipay pgvvyqdgfy
      301 gadlylteem ltsrskslsg vsvpfsditd gvdtqptdth slllqqqpqp lqplqqltam
      361 vmagctqqil tmplplplat elalwrvyte vatadlppte vt
//
LOCUS       XP_053935077             400 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA binding protein fox-1 homolog 2 isoform X20 [Cuculus canorus].
ACCESSION   XP_053935077
VERSION     XP_053935077.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079102.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..400
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..400
                     /product="RNA binding protein fox-1 homolog 2 isoform X20"
                     /calculated_mol_wt=42599
     Region          187..262
                     /region_name="RRM_FOX1_like"
                     /note="RNA recognition motif (RRM) found in vertebrate RNA
                     binding protein fox-1 homologs and similar proteins;
                     cd12407"
                     /db_xref="CDD:409841"
     Site            order(188,190,192..197,217..221,223..228,230,254,259..262)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:409841"
     Region          327..>371
                     /region_name="Fox-1_C"
                     /note="Calcitonin gene-related peptide regulator C
                     terminal; pfam12414"
                     /db_xref="CDD:463568"
     CDS             1..400
                     /gene="RBFOX2"
                     /coded_by="XM_054079102.1:263..1465"
                     /db_xref="GeneID:104065850"
ORIGIN      
        1 maeggqppqq qqqqqqqpql lpggggaarg vkrepeleqp mpggdgaegg hskrlrteae
       61 aegagmqnep ltsgyhgypa rdnqgnqepa atpdamvqpf ttipfppppq ngipteygvp
      121 htqdyagqts ehnltlygst qphgeqstnt astqngslaq teggaqtdgq qsqtqssent
      181 eskstpkrlh vsnipfrfrd pdlrqmfgqf gkildveiif nergskgfgf vtfensadad
      241 rareklhgtv vegrkievnn atarvmtnkk mvtpyangwk lspvvgavyg pelyaassfq
      301 advslgndaa vplsgrggin tyipliipgf pyptaattaa afrgahlrgr grtvygavra
      361 vpptaipayp gsrwsitakt llvldrepsn cglpgrilrc
//
LOCUS       XP_053935418             441 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA binding protein fox-1 homolog 2 isoform X21 [Cuculus canorus].
ACCESSION   XP_053935418
VERSION     XP_053935418.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079443.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..441
                     /product="RNA binding protein fox-1 homolog 2 isoform X21"
                     /calculated_mol_wt=47024
     Region          186..261
                     /region_name="RRM_FOX1_like"
                     /note="RNA recognition motif (RRM) found in vertebrate RNA
                     binding protein fox-1 homologs and similar proteins;
                     cd12407"
                     /db_xref="CDD:409841"
     Site            order(187,189,191..196,216..220,222..227,229,253,258..261)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:409841"
     Region          326..>371
                     /region_name="Fox-1_C"
                     /note="Calcitonin gene-related peptide regulator C
                     terminal; pfam12414"
                     /db_xref="CDD:463568"
     CDS             1..441
                     /gene="RBFOX2"
                     /coded_by="XM_054079443.1:263..1588"
                     /db_xref="GeneID:104065850"
ORIGIN      
        1 maeggqppqq qqqqqqqpql lpggggaarg vkrepeleqp mpggdgaegg hskrlrteae
       61 aegagmqnep ltsgyhgypa rdnqgnqepa atpdamvqpf ttipfppppq ngipteygvp
      121 htqdyagqts ehnltlygst qphgeqstnt astqngslat eggaqtdgqq sqtqssente
      181 skstpkrlhv snipfrfrdp dlrqmfgqfg kildveiifn ergskgfgfv tfensadadr
      241 areklhgtvv egrkievnna tarvmtnkkm vtpyangwkl spvvgavygp elyaassfqa
      301 dvslgndaav plsgrggint yipliipgfp yptaattaaa frgahlrgrg rtvygavrav
      361 pptaipaypg vdtqptdths lllqqqpqpl qplqqltamv magctqqilt mplplplate
      421 lalwrvytev atadlpptev t
//
LOCUS       XP_053935656             739 aa            linear   VRT 09-MAR-2023
DEFINITION  collagen alpha-1(VIII) chain [Cuculus canorus].
ACCESSION   XP_053935656
VERSION     XP_053935656.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079681.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..739
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..739
                     /product="collagen alpha-1(VIII) chain"
                     /calculated_mol_wt=72812
     Region          <151..>490
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          608..739
                     /region_name="C1Q"
                     /note="Complement component C1q domain; smart00110"
                     /db_xref="CDD:128420"
     CDS             1..739
                     /gene="COL8A1"
                     /coded_by="XM_054079681.1:384..2603"
                     /db_xref="GeneID:104055833"
ORIGIN      
        1 mamllmpvql lavavtiyie lvrsaqggvy ygikqlppqv pqyqplgqqv phmplgkegi
       61 pmqhmgkevp hmqygkeyph lpqyrkevpq mpllgkdmap kkekempvrs lrgeqgppge
      121 pgprgppgpp glpghgvpga kgkpgpqgyp gigkpglpgm pgkpgvmgpp gprgemgpkg
      181 emgpmgipgp qgppgphglp gvgkagapgl qgqpgpkgep gmkgppgapg ipgpkgekgv
      241 gipglpglkg ppglpgapgp vglpgvgkpg mvgfpgpqgp tgkpglpgel glqgppgppg
      301 iqgppgppgi gkpgqdgvpg qpgfpggkge qglpglpgpp gipgvgkpgf pgpkgergvg
      361 gppgplgpkg ekghvgppgm ggppgepgqp glpgimgppg aagfpgpkge ggavgppgpv
      421 gpkgepglqg fpgkpgfpge vgapglrglp gptgpkgeag qkglpglpgv pglvgpkgep
      481 glpgaqglqg psgipgiagp sgpigppglp gakgepgmpg ppgfpgvgkp gaaglqgppg
      541 kpgalgppgq pglqgppgpp gppgppviip ptppavgqyl pdvgpgiegv kppygymgkk
      601 gkaggivyem paftaelltp fprvgvpvkf dkllyngrqn ynpqtgiftc eipgvyyfay
      661 hihckgasvw valfknnepl mytydeykkg fldqasgsav vqlmhgdkvy vqmpseqaag
      721 lyagqyvhss fsgyllypm
//
LOCUS       XP_053935719             739 aa            linear   VRT 09-MAR-2023
DEFINITION  collagen alpha-1(VIII) chain [Cuculus canorus].
ACCESSION   XP_053935719
VERSION     XP_053935719.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079744.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..739
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..739
                     /product="collagen alpha-1(VIII) chain"
                     /calculated_mol_wt=72812
     Region          <151..>490
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          608..739
                     /region_name="C1Q"
                     /note="Complement component C1q domain; smart00110"
                     /db_xref="CDD:128420"
     CDS             1..739
                     /gene="COL8A1"
                     /coded_by="XM_054079744.1:425..2644"
                     /db_xref="GeneID:104055833"
ORIGIN      
        1 mamllmpvql lavavtiyie lvrsaqggvy ygikqlppqv pqyqplgqqv phmplgkegi
       61 pmqhmgkevp hmqygkeyph lpqyrkevpq mpllgkdmap kkekempvrs lrgeqgppge
      121 pgprgppgpp glpghgvpga kgkpgpqgyp gigkpglpgm pgkpgvmgpp gprgemgpkg
      181 emgpmgipgp qgppgphglp gvgkagapgl qgqpgpkgep gmkgppgapg ipgpkgekgv
      241 gipglpglkg ppglpgapgp vglpgvgkpg mvgfpgpqgp tgkpglpgel glqgppgppg
      301 iqgppgppgi gkpgqdgvpg qpgfpggkge qglpglpgpp gipgvgkpgf pgpkgergvg
      361 gppgplgpkg ekghvgppgm ggppgepgqp glpgimgppg aagfpgpkge ggavgppgpv
      421 gpkgepglqg fpgkpgfpge vgapglrglp gptgpkgeag qkglpglpgv pglvgpkgep
      481 glpgaqglqg psgipgiagp sgpigppglp gakgepgmpg ppgfpgvgkp gaaglqgppg
      541 kpgalgppgq pglqgppgpp gppgppviip ptppavgqyl pdvgpgiegv kppygymgkk
      601 gkaggivyem paftaelltp fprvgvpvkf dkllyngrqn ynpqtgiftc eipgvyyfay
      661 hihckgasvw valfknnepl mytydeykkg fldqasgsav vqlmhgdkvy vqmpseqaag
      721 lyagqyvhss fsgyllypm
//
LOCUS       XP_053935784             739 aa            linear   VRT 09-MAR-2023
DEFINITION  collagen alpha-1(VIII) chain [Cuculus canorus].
ACCESSION   XP_053935784
VERSION     XP_053935784.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079809.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..739
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..739
                     /product="collagen alpha-1(VIII) chain"
                     /calculated_mol_wt=72812
     Region          <151..>490
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          608..739
                     /region_name="C1Q"
                     /note="Complement component C1q domain; smart00110"
                     /db_xref="CDD:128420"
     CDS             1..739
                     /gene="COL8A1"
                     /coded_by="XM_054079809.1:268..2487"
                     /db_xref="GeneID:104055833"
ORIGIN      
        1 mamllmpvql lavavtiyie lvrsaqggvy ygikqlppqv pqyqplgqqv phmplgkegi
       61 pmqhmgkevp hmqygkeyph lpqyrkevpq mpllgkdmap kkekempvrs lrgeqgppge
      121 pgprgppgpp glpghgvpga kgkpgpqgyp gigkpglpgm pgkpgvmgpp gprgemgpkg
      181 emgpmgipgp qgppgphglp gvgkagapgl qgqpgpkgep gmkgppgapg ipgpkgekgv
      241 gipglpglkg ppglpgapgp vglpgvgkpg mvgfpgpqgp tgkpglpgel glqgppgppg
      301 iqgppgppgi gkpgqdgvpg qpgfpggkge qglpglpgpp gipgvgkpgf pgpkgergvg
      361 gppgplgpkg ekghvgppgm ggppgepgqp glpgimgppg aagfpgpkge ggavgppgpv
      421 gpkgepglqg fpgkpgfpge vgapglrglp gptgpkgeag qkglpglpgv pglvgpkgep
      481 glpgaqglqg psgipgiagp sgpigppglp gakgepgmpg ppgfpgvgkp gaaglqgppg
      541 kpgalgppgq pglqgppgpp gppgppviip ptppavgqyl pdvgpgiegv kppygymgkk
      601 gkaggivyem paftaelltp fprvgvpvkf dkllyngrqn ynpqtgiftc eipgvyyfay
      661 hihckgasvw valfknnepl mytydeykkg fldqasgsav vqlmhgdkvy vqmpseqaag
      721 lyagqyvhss fsgyllypm
//
LOCUS       XP_009555249             376 aa            linear   VRT 09-MAR-2023
DEFINITION  type 2 lactosamine alpha-2,3-sialyltransferase isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009555249
VERSION     XP_009555249.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556954.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555249.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..376
                     /product="type 2 lactosamine alpha-2,3-sialyltransferase
                     isoform X1"
                     /calculated_mol_wt=42920
     Region          161..366
                     /region_name="GT29_ST3GAL6"
                     /note="beta-galactoside alpha-2,3-sialyltransferase 6;
                     cd23984"
                     /db_xref="CDD:467712"
     Site            order(169..171,192..193,214,305..307,325..326,336..338,
                     354)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:467712"
     CDS             1..376
                     /gene="ST3GAL6"
                     /coded_by="XM_009556954.2:150..1280"
                     /db_xref="GeneID:104055779"
ORIGIN      
        1 mgrlpanlvq cvlpglkrps glpvmkrill ffilaaavmy vilhgnlwrn nlywisfygq
       61 tssvrastsc etsgvtqlpp taverrnvld acllkpafes lldaektypf lcandflrva
      121 efhgsdkfel pygikraehf fhlalsrlqn cglfseddsv acrrcvvvgn ggvlrnktlg
      181 ekidsydvii rmnngpvigy eedvgrrttf rlsypesifs dpihydpntt vvlvvfkprd
      241 lkwlweilsg qqisakgfwk kpalnmiyks tqirvldpsi trktayewlr fptrfpkkek
      301 pkhpttglia itlafhiche vhlagfkydf tdrnsslhyy gndtmsqmiq neyhninaeq
      361 kflkklidkn fvvnlt
//
LOCUS       XP_009555251             353 aa            linear   VRT 09-MAR-2023
DEFINITION  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2 [Cuculus
            canorus].
ACCESSION   XP_009555251
VERSION     XP_009555251.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556956.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555251.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..353
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..353
                     /product="type 2 lactosamine alpha-2,3-sialyltransferase
                     isoform X2"
                     /calculated_mol_wt=40541
     Region          138..343
                     /region_name="GT29_ST3GAL6"
                     /note="beta-galactoside alpha-2,3-sialyltransferase 6;
                     cd23984"
                     /db_xref="CDD:467712"
     Site            order(146..148,169..170,191,282..284,302..303,313..315,
                     331)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:467712"
     CDS             1..353
                     /gene="ST3GAL6"
                     /coded_by="XM_009556956.2:10..1071"
                     /db_xref="GeneID:104055779"
ORIGIN      
        1 mgrlpanlvq cvlpglkrps glpvmkrill ffilaaavmy vilhgnlwrn nlywlpptav
       61 errnvldacl lkpafeslld aektypflca ndflrvaefh gsdkfelpyg ikraehffhl
      121 alsrlqncgl fseddsvacr rcvvvgnggv lrnktlgeki dsydviirmn ngpvigyeed
      181 vgrrttfrls ypesifsdpi hydpnttvvl vvfkprdlkw lweilsgqqi sakgfwkkpa
      241 lnmiykstqi rvldpsitrk tayewlrfpt rfpkkekpkh pttgliaitl afhichevhl
      301 agfkydftdr nsslhyygnd tmsqmiqney hninaeqkfl kklidknfvv nlt
//
LOCUS       XP_053936035             352 aa            linear   VRT 09-MAR-2023
DEFINITION  type 2 lactosamine alpha-2,3-sialyltransferase isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053936035
VERSION     XP_053936035.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080060.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..352
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..352
                     /product="type 2 lactosamine alpha-2,3-sialyltransferase
                     isoform X3"
                     /calculated_mol_wt=40422
     Region          137..342
                     /region_name="GT29_ST3GAL6"
                     /note="beta-galactoside alpha-2,3-sialyltransferase 6;
                     cd23984"
                     /db_xref="CDD:467712"
     Site            order(145..147,168..169,190,281..283,301..302,312..314,
                     330)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:467712"
     CDS             1..352
                     /gene="ST3GAL6"
                     /coded_by="XM_054080060.1:999..2057"
                     /db_xref="GeneID:104055779"
ORIGIN      
        1 mkrillffil aaavmyvilh gnlwrnnlyw isfygqtssv rastscetsg vtqlpptave
       61 rrnvldacll kpafesllda ektypflcan dflrvaefhg sdkfelpygi kraehffhla
      121 lsrlqncglf seddsvacrr cvvvgnggvl rnktlgekid sydviirmnn gpvigyeedv
      181 grrttfrlsy pesifsdpih ydpnttvvlv vfkprdlkwl weilsgqqis akgfwkkpal
      241 nmiykstqir vldpsitrkt ayewlrfptr fpkkekpkhp ttgliaitla fhichevhla
      301 gfkydftdrn sslhyygndt msqmiqneyh ninaeqkflk klidknfvvn lt
//
LOCUS       XP_053936116             352 aa            linear   VRT 09-MAR-2023
DEFINITION  type 2 lactosamine alpha-2,3-sialyltransferase isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053936116
VERSION     XP_053936116.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080141.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..352
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..352
                     /product="type 2 lactosamine alpha-2,3-sialyltransferase
                     isoform X3"
                     /calculated_mol_wt=40422
     Region          137..342
                     /region_name="GT29_ST3GAL6"
                     /note="beta-galactoside alpha-2,3-sialyltransferase 6;
                     cd23984"
                     /db_xref="CDD:467712"
     Site            order(145..147,168..169,190,281..283,301..302,312..314,
                     330)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:467712"
     CDS             1..352
                     /gene="ST3GAL6"
                     /coded_by="XM_054080141.1:1133..2191"
                     /db_xref="GeneID:104055779"
ORIGIN      
        1 mkrillffil aaavmyvilh gnlwrnnlyw isfygqtssv rastscetsg vtqlpptave
       61 rrnvldacll kpafesllda ektypflcan dflrvaefhg sdkfelpygi kraehffhla
      121 lsrlqncglf seddsvacrr cvvvgnggvl rnktlgekid sydviirmnn gpvigyeedv
      181 grrttfrlsy pesifsdpih ydpnttvvlv vfkprdlkwl weilsgqqis akgfwkkpal
      241 nmiykstqir vldpsitrkt ayewlrfptr fpkkekpkhp ttgliaitla fhichevhla
      301 gfkydftdrn sslhyygndt msqmiqneyh ninaeqkflk klidknfvvn lt
//
LOCUS       XP_053936196             329 aa            linear   VRT 09-MAR-2023
DEFINITION  type 2 lactosamine alpha-2,3-sialyltransferase isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053936196
VERSION     XP_053936196.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080221.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..329
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..329
                     /product="type 2 lactosamine alpha-2,3-sialyltransferase
                     isoform X4"
                     /calculated_mol_wt=38043
     Region          114..319
                     /region_name="GT29_ST3GAL6"
                     /note="beta-galactoside alpha-2,3-sialyltransferase 6;
                     cd23984"
                     /db_xref="CDD:467712"
     Site            order(122..124,145..146,167,258..260,278..279,289..291,
                     307)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:467712"
     CDS             1..329
                     /gene="ST3GAL6"
                     /coded_by="XM_054080221.1:999..1988"
                     /db_xref="GeneID:104055779"
ORIGIN      
        1 mkrillffil aaavmyvilh gnlwrnnlyw lpptaverrn vldacllkpa feslldaekt
       61 ypflcandfl rvaefhgsdk felpygikra ehffhlalsr lqncglfsed dsvacrrcvv
      121 vgnggvlrnk tlgekidsyd viirmnngpv igyeedvgrr ttfrlsypes ifsdpihydp
      181 nttvvlvvfk prdlkwlwei lsgqqisakg fwkkpalnmi ykstqirvld psitrktaye
      241 wlrfptrfpk kekpkhpttg liaitlafhi chevhlagfk ydftdrnssl hyygndtmsq
      301 miqneyhnin aeqkflkkli dknfvvnlt
//
LOCUS       XP_053936430            2552 aa            linear   VRT 09-MAR-2023
DEFINITION  very large A-kinase anchor protein [Cuculus canorus].
ACCESSION   XP_053936430
VERSION     XP_053936430.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080455.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2552
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2552
                     /product="very large A-kinase anchor protein"
                     /calculated_mol_wt=280881
     Region          1878..1964
                     /region_name="Crystall"
                     /note="Beta/Gamma crystallin; cl02528"
                     /db_xref="CDD:470604"
     Region          2063..2145
                     /region_name="Crystall"
                     /note="Beta/Gamma crystallin; pfam00030"
                     /db_xref="CDD:459639"
     Region          2158..2237
                     /region_name="Crystall"
                     /note="Beta/Gamma crystallin; pfam00030"
                     /db_xref="CDD:459639"
     Region          2254..2327
                     /region_name="Crystall"
                     /note="Beta/Gamma crystallin; cl02528"
                     /db_xref="CDD:470604"
     Region          2335..2415
                     /region_name="Crystall"
                     /note="Beta/Gamma crystallin; pfam00030"
                     /db_xref="CDD:459639"
     Region          2417..2552
                     /region_name="beta-trefoil_Ricin_vlAKAP"
                     /note="ricin B-type lectin domain, beta-trefoil fold,
                     found in very large A-kinase anchor protein (vlAKAP) and
                     similar proteins; cd23463"
                     /db_xref="CDD:467341"
     Site            order(2434..2437,2446,2448,2451,2457..2458)
                     /site_type="other"
                     /note="putative sugar binding site [chemical binding]"
                     /db_xref="CDD:467341"
     Site            order(2477..2480,2490,2492,2495,2499..2500)
                     /site_type="other"
                     /note="putative sugar binding site [chemical binding]"
                     /db_xref="CDD:467341"
     Site            order(2521..2524,2534,2536,2539,2544..2545)
                     /site_type="other"
                     /note="putative sugar binding site [chemical binding]"
                     /db_xref="CDD:467341"
     CDS             1..2552
                     /gene="CRYBG3"
                     /coded_by="XM_054080455.1:135..7793"
                     /db_xref="GeneID:104056016"
ORIGIN      
        1 msgggsrrrs gspwhstfsr ffsrsspgeg aaapvssenk gseainlkss qkesttlpah
       61 lkvcqneekn hsteelskse iqeelkkans lpslirgikt adkdkqpreg ffhflgslfn
      121 iatksslves kpptfqnepn ghekdlqntn tlpedmqpkr pkiedaiyst astkedsvnk
      181 geailnnigk disqdpqgdw klpagaqkqm lrkpeapavt yatyrgsari rqllksqsev
      241 aekgeerten rnalmvkeng eiqttispks gclkenaene gkdhgvgviv dssafnmett
      301 ksgkaqhclv sskgkitaka ttsstessrd idlkhtpala atkfkrtcsl dsflssssrn
      361 geiltnstsq itnslkmssa nglvgkevel lgeaealfqg dkiatcnfde dnccsiaask
      421 estkimqddc lhshksknks aneelqvskg eyccnhqmhs hlepasdvqm lhsittifqe
      481 qadqrtgsan kgsdprksdt qkivaavete qnpqkflata lspfdeqtpt llsmestgek
      541 citagnltat tssiknyedt vmgsrtcnee lskfgkrihi qnddqlvlve nckdtvapqa
      601 gvpcletegv etmkvfsqvs venladvssc ihacesmkan fneltaplpv tyessfetgg
      661 cclvslhpsc ktertigere vdlkdaretv scpdlrceks ksfelvelsl sessvpvhnc
      721 gsvsletvqd vsakalvilt edntakpavh plisisrtdd htlpaskidk agmadvallp
      781 seykdcisel sslksqgnvl vvshsdlrcg erplpnhsvf icekdidvdi tsksstlsed
      841 gsinlsskke nsnkpkispp vldfssdnqv kmpypatnse ngqitrwsta seqdnfifpa
      901 aefsriiped rmsevsvclg dlrascpnds lepeltpaml dssaagvdvv gicirrpssp
      961 nlgsreafdl slsaletvgv aqgnnysssy ragdgaeeaa svqqadssvl aeammspihp
     1021 wkslgtsses actesmckna vgqvnlanyv salsqapsmt nnqtsaapae snelcseelr
     1081 dsntkgqecp kfqnaavllk kaeeivdsvl qlaieeimak paigvcqlcg skdglistgi
     1141 inyqkagtvq leaeeiqsav qslkhfnens gggsssftgn etvdtsnqge kilsyipdki
     1201 dlhsalalka keiidevins akqklasnqw qgseskrlse kfepkpktet lkvlnldikl
     1261 partdeprek vdaqivgvnf ekadgldppl lpnsmengid wpqraekipn naftcqtngf
     1321 lttgssvrpe sdfmtpdkeg ddrkvcdhla aaekcrkagv satsrksdgs lrlihrdatv
     1381 teemlqslql kdlcnntnmp ehallgsvnv nlpsfmpnee hisiqteskv kssswgslet
     1441 saedspykhc rreaaeipaq vivtledskv menkeeraeg tsemaetntg lnalfavpql
     1501 siigddsegk scfntvfaqd nenpkqverk dqdtqrnyql eesgldcsdd tkestdllgf
     1561 splieqwens sftiiyedal qtenksvstd dmqtgllsss vlpsdnvddl tcerannkhd
     1621 paclygkdnk lteatdsrss esflsvearr crvyplslsp iyeddssqed llstdvspeg
     1681 hpsgiskdnt dhasvlsllq svserlqfts qfskedeeeg vedqeeeess yeeqmldaeq
     1741 eedclstqwr gdlkttlqsn kqslfpeqpl plskeqldsk hqpelfpdva spsrtpckpi
     1801 sqkadaavkl pppsiyyqyl ksastssfek gtrfgsilqd vlqpkmhwsq dntmlklgel
     1861 sanlidrasl kynprpgkii iydiygdksk qeihsdvlnt mswifpsgal lriirgcwil
     1921 yekpkfqgrk yvleegetvl dhlwdlpgvk yrrrnltvgs ikhitkdcdv pevefcpadg
     1981 gteglpvciq tavanleeld veknpyisvk sgvwlaysdi nykgemkvle vcdspseips
     2041 advkslrplk mgglkvqmpm nvkiiiyekt hfggwskefs envssvpavf hseeefqeig
     2101 sirviggvwv aydkerykgr qylleegnye drhlwggtds ilsfrflqad fiessvalfq
     2161 sddedgkald iineeipdle lagfgpetks ilvrsgvwva yqqkyfcgeq yvlekgkykc
     2221 ffdwggsskt imsirpikle plgtdepphw lkafsnthfq gtcidftaev sdftsfipcs
     2281 fkvlrgcwll cyqgettdnh cvleeglfvd lsscgcptat ikslkpiqyv faepsislfa
     2341 lecckgrelh fsepinsvln edlhfytqsv wvrsglwiay egcnflgrqi llepseisnw
     2401 sehsgwkaig slrpvkqpav ylrvknraqg kyltvagsla diratsvcas pyngkntqiw
     2461 hysrglfksk annacldvig grdvpgakva lwaehgkdrq kwrlnedgti ssylsnqlvl
     2521 dikggnyydk nhiimnqpid nklsqqwdie il
//
LOCUS       XP_053936552             478 aa            linear   VRT 09-MAR-2023
DEFINITION  ribosomal oxygenase 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053936552
VERSION     XP_053936552.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080577.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..478
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..478
                     /product="ribosomal oxygenase 2 isoform X1"
                     /calculated_mol_wt=54906
     Region          143..268
                     /region_name="JmjC_2"
                     /note="JmjC domain; pfam08007"
                     /db_xref="CDD:462340"
     Region          338..441
                     /region_name="ROXA-like_wH"
                     /note="ROXA-like winged helix; pfam20514"
                     /db_xref="CDD:466663"
     CDS             1..478
                     /gene="RIOX2"
                     /coded_by="XM_054080577.1:485..1921"
                     /db_xref="GeneID:104055971"
ORIGIN      
        1 mdtrmrnmpk kggkhaemgk eiqtqckrak veaessasim sfespdslfg slispikqev
       61 ffreyweqkp llvqrndptl aayyqslfql sdlkelcsqg lyygrdinic rcvngrkkvl
      121 nkegkanymq lkkdfdqkka tiqfhqpqrf keelwaiqek lecyfgslvg snvyitpqgs
      181 qglpphyddv evfilqlege khwrlykptv hlareynves kdiignpthe filkpgdlly
      241 fprgtihqad tplgiaysth vtistyqnns wgdflldaip glvfdtaked valrrsiprq
      301 llmqvdiads tkkmssllrr ladrlentse lrssdmkkdf imnrlppclg cdsdvltpgg
      361 klpkidskir lqfrdhavit vepdqensde irremvyvyh slrnrrethm mgteddstse
      421 erttqqthgl rfplsyldal kqiwssstvy vkelnltsda ekvnlalslw teclievv
//
LOCUS       XP_053936628             477 aa            linear   VRT 09-MAR-2023
DEFINITION  ribosomal oxygenase 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053936628
VERSION     XP_053936628.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080653.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..477
                     /product="ribosomal oxygenase 2 isoform X2"
                     /calculated_mol_wt=54778
     Region          143..268
                     /region_name="JmjC_2"
                     /note="JmjC domain; pfam08007"
                     /db_xref="CDD:462340"
     Region          338..440
                     /region_name="ROXA-like_wH"
                     /note="ROXA-like winged helix; pfam20514"
                     /db_xref="CDD:466663"
     CDS             1..477
                     /gene="RIOX2"
                     /coded_by="XM_054080653.1:483..1916"
                     /db_xref="GeneID:104055971"
ORIGIN      
        1 mdtrmrnmpk kggkhaemgk eiqtqckrak veaessasim sfespdslfg slispikqev
       61 ffreyweqkp llvqrndptl aayyqslfql sdlkelcsqg lyygrdinic rcvngrkkvl
      121 nkegkanymq lkkdfdqkka tiqfhqpqrf keelwaiqek lecyfgslvg snvyitpqgs
      181 qglpphyddv evfilqlege khwrlykptv hlareynves kdiignpthe filkpgdlly
      241 fprgtihqad tplgiaysth vtistyqnns wgdflldaip glvfdtaked valrrsiprq
      301 llmqvdiads tkkmssllrr ladrlentse lrssdmkkdf imnrlppclg cdsdvltpgg
      361 klpkidskir lqfrdhavit vepdqensde irremvyvyh slrnrrethm mgteddstse
      421 erttqthglr fplsyldalk qiwssstvyv kelnltsdae kvnlalslwt eclievv
//
LOCUS       XP_053936698             471 aa            linear   VRT 09-MAR-2023
DEFINITION  ribosomal oxygenase 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053936698
VERSION     XP_053936698.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080723.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..471
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..471
                     /product="ribosomal oxygenase 2 isoform X3"
                     /calculated_mol_wt=54001
     Region          136..261
                     /region_name="JmjC_2"
                     /note="JmjC domain; pfam08007"
                     /db_xref="CDD:462340"
     Region          331..434
                     /region_name="ROXA-like_wH"
                     /note="ROXA-like winged helix; pfam20514"
                     /db_xref="CDD:466663"
     CDS             1..471
                     /gene="RIOX2"
                     /coded_by="XM_054080723.1:147..1562"
                     /db_xref="GeneID:104055971"
ORIGIN      
        1 mpkkggkhae mgkeiqtqck rakveaessa simsfespds lfgslispik qevffreywe
       61 qkpllvqrnd ptlaayyqsl fqlsdlkelc sqglyygrdi nicrcvngrk kvlnkegkan
      121 ymqlkkdfdq kkatiqfhqp qrfkeelwai qeklecyfgs lvgsnvyitp qgsqglpphy
      181 ddvevfilql egekhwrlyk ptvhlareyn veskdiignp thefilkpgd llyfprgtih
      241 qadtplgiay sthvtistyq nnswgdflld aipglvfdta kedvalrrsi prqllmqvdi
      301 adstkkmssl lrrladrlen tselrssdmk kdfimnrlpp clgcdsdvlt pggklpkids
      361 kirlqfrdha vitvepdqen sdeirremvy vyhslrnrre thmmgtedds tseerttqqt
      421 hglrfplsyl dalkqiwsss tvyvkelnlt sdaekvnlal slwtecliev v
//
LOCUS       XP_053936815            1450 aa            linear   VRT 09-MAR-2023
DEFINITION  early endosome antigen 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053936815
VERSION     XP_053936815.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080840.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1450
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1450
                     /product="early endosome antigen 1 isoform X1"
                     /calculated_mol_wt=166268
     Region          <177..>361
                     /region_name="GumC"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; COG3206"
                     /db_xref="CDD:442439"
     Region          329..1207
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          1091..>1386
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          1386..1448
                     /region_name="FYVE_EEA1"
                     /note="FYVE domain found in early endosome antigen 1
                     (EEA1) and similar proteins; cd15730"
                     /db_xref="CDD:277269"
     Site            order(1386..1388,1413..1417,1430..1435,1447..1448)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:277269"
     Site            order(1388,1391,1409..1414,1416..1417,1439..1441)
                     /site_type="other"
                     /note="putative phosphatidylinositol 3-phosphate binding
                     site [chemical binding]"
                     /db_xref="CDD:277269"
     CDS             1..1450
                     /gene="EEA1"
                     /coded_by="XM_054080840.1:119..4471"
                     /db_xref="GeneID:104058436"
ORIGIN      
        1 mfrrilqrtp grggsqssds dssatpgnav dvnsegsseg ficplcmkvc vtstdlsehy
       61 qnehtgtegr qelrdlpavt gficplcmks hgsaeelfkh yeaihnsgid sthggeghls
      121 perdevsllr qevqdlqasl keerwyseel kkeleklqgq qqqhsksdgl ttatstesle
      181 rqleeiqven fnikqmkdlf eqkaaqlste ivdlkskyde eislregaeq kvtnltqelq
      241 kerntveylk tellqrpgve dvavlkkelv qvqtlmdkmt lereresekl kdeckhlqae
      301 qanseatinq lraelakgpq evavyvqelq klqssvkele qknqsltekl lkkeqdytrl
      361 eekhnevsms kknvqasfhq kdldcqqlqa klsaseasiq rlqtelgekg eashklkeel
      421 sevetkyqhl kaeckqlqqq reekeqhglq lqselsqlhs klleterqlg eahgrlkeqr
      481 qlsseklmdk eqqvadlqlk lsraeeqlke kaanstelqh qldkakqqhq eqqtlqqntt
      541 aklreaqndl eqvlrqigdk dqkiqnleal lqkskenisl lekeredlya kiqagegeta
      601 vlnqlqeknh alqiqvtqlt eklknqsesh kqaqenlheq vqeqkahlra aqdrvlslea
      661 nvteltsqln eskekvsqld vqvkaktell lsaeaskaaq radlqnhldt aqhalqdkqq
      721 elnkvsvqld qvtaklnekq eycaqleanl keykekrlyl eqkteelegq lkkleadvld
      781 akaskeqtlq elqqqrqqst eldlrtaels kqleaareti ssakldlqnk sealekakqq
      841 iskqeeekai lkqnleksnq dtikqlkeld ckmqaatael qqtklekdtl fkdltatkdk
      901 lsknsesfkk rkdelekeiq kgkaavaeme kscqelkhql qlqtesvake rnelknslek
      961 kegiskqlsi eldsaraqvl eiqsllkeke kseqhlqgkl rdlkesfeqk kkhsetlqae
     1021 lktallekae lenklqqqsi lsaqelkaek akladlqkty ekhkenmekl qldlygkese
     1081 llatrqdlks teeklalaqe elvssrnria gnnqqiqelk kakltleqda skkeqqlgek
     1141 tkmlqdlqnd rilkekdlan ekcrttelqe irnrlekesa rlgeelrack qefekevanl
     1201 kdakqlliqq klelqskidh mnsaleqekk thqavkdqlk kreeelkkec aeieaklhse
     1261 kkdkeeesrk heekenkltm qvtalnenla tmkkewqssq rrvselekqt ddlrgdiavl
     1321 eatvqnnqde rrallercik segeieklqa klvemkkkld nttaamqelg renqslqikh
     1381 tqalnrkwae dndvqncmac gkgfsvtvrr hhcrqcgnif caecsaknal tpsskkpvrv
     1441 cdtcfndlqg
//
LOCUS       XP_053936920            1450 aa            linear   VRT 09-MAR-2023
DEFINITION  early endosome antigen 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053936920
VERSION     XP_053936920.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080945.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1450
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1450
                     /product="early endosome antigen 1 isoform X1"
                     /calculated_mol_wt=166268
     Region          <177..>361
                     /region_name="GumC"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; COG3206"
                     /db_xref="CDD:442439"
     Region          329..1207
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          1091..>1386
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          1386..1448
                     /region_name="FYVE_EEA1"
                     /note="FYVE domain found in early endosome antigen 1
                     (EEA1) and similar proteins; cd15730"
                     /db_xref="CDD:277269"
     Site            order(1386..1388,1413..1417,1430..1435,1447..1448)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:277269"
     Site            order(1388,1391,1409..1414,1416..1417,1439..1441)
                     /site_type="other"
                     /note="putative phosphatidylinositol 3-phosphate binding
                     site [chemical binding]"
                     /db_xref="CDD:277269"
     CDS             1..1450
                     /gene="EEA1"
                     /coded_by="XM_054080945.1:119..4471"
                     /db_xref="GeneID:104058436"
ORIGIN      
        1 mfrrilqrtp grggsqssds dssatpgnav dvnsegsseg ficplcmkvc vtstdlsehy
       61 qnehtgtegr qelrdlpavt gficplcmks hgsaeelfkh yeaihnsgid sthggeghls
      121 perdevsllr qevqdlqasl keerwyseel kkeleklqgq qqqhsksdgl ttatstesle
      181 rqleeiqven fnikqmkdlf eqkaaqlste ivdlkskyde eislregaeq kvtnltqelq
      241 kerntveylk tellqrpgve dvavlkkelv qvqtlmdkmt lereresekl kdeckhlqae
      301 qanseatinq lraelakgpq evavyvqelq klqssvkele qknqsltekl lkkeqdytrl
      361 eekhnevsms kknvqasfhq kdldcqqlqa klsaseasiq rlqtelgekg eashklkeel
      421 sevetkyqhl kaeckqlqqq reekeqhglq lqselsqlhs klleterqlg eahgrlkeqr
      481 qlsseklmdk eqqvadlqlk lsraeeqlke kaanstelqh qldkakqqhq eqqtlqqntt
      541 aklreaqndl eqvlrqigdk dqkiqnleal lqkskenisl lekeredlya kiqagegeta
      601 vlnqlqeknh alqiqvtqlt eklknqsesh kqaqenlheq vqeqkahlra aqdrvlslea
      661 nvteltsqln eskekvsqld vqvkaktell lsaeaskaaq radlqnhldt aqhalqdkqq
      721 elnkvsvqld qvtaklnekq eycaqleanl keykekrlyl eqkteelegq lkkleadvld
      781 akaskeqtlq elqqqrqqst eldlrtaels kqleaareti ssakldlqnk sealekakqq
      841 iskqeeekai lkqnleksnq dtikqlkeld ckmqaatael qqtklekdtl fkdltatkdk
      901 lsknsesfkk rkdelekeiq kgkaavaeme kscqelkhql qlqtesvake rnelknslek
      961 kegiskqlsi eldsaraqvl eiqsllkeke kseqhlqgkl rdlkesfeqk kkhsetlqae
     1021 lktallekae lenklqqqsi lsaqelkaek akladlqkty ekhkenmekl qldlygkese
     1081 llatrqdlks teeklalaqe elvssrnria gnnqqiqelk kakltleqda skkeqqlgek
     1141 tkmlqdlqnd rilkekdlan ekcrttelqe irnrlekesa rlgeelrack qefekevanl
     1201 kdakqlliqq klelqskidh mnsaleqekk thqavkdqlk kreeelkkec aeieaklhse
     1261 kkdkeeesrk heekenkltm qvtalnenla tmkkewqssq rrvselekqt ddlrgdiavl
     1321 eatvqnnqde rrallercik segeieklqa klvemkkkld nttaamqelg renqslqikh
     1381 tqalnrkwae dndvqncmac gkgfsvtvrr hhcrqcgnif caecsaknal tpsskkpvrv
     1441 cdtcfndlqg
//
LOCUS       XP_053936992            1409 aa            linear   VRT 09-MAR-2023
DEFINITION  early endosome antigen 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053936992
VERSION     XP_053936992.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081017.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1409
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1409
                     /product="early endosome antigen 1 isoform X2"
                     /calculated_mol_wt=161706
     Region          <136..>320
                     /region_name="GumC"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; COG3206"
                     /db_xref="CDD:442439"
     Region          288..1166
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          1050..>1345
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          1345..1407
                     /region_name="FYVE_EEA1"
                     /note="FYVE domain found in early endosome antigen 1
                     (EEA1) and similar proteins; cd15730"
                     /db_xref="CDD:277269"
     Site            order(1345..1347,1372..1376,1389..1394,1406..1407)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:277269"
     Site            order(1347,1350,1368..1373,1375..1376,1398..1400)
                     /site_type="other"
                     /note="putative phosphatidylinositol 3-phosphate binding
                     site [chemical binding]"
                     /db_xref="CDD:277269"
     CDS             1..1409
                     /gene="EEA1"
                     /coded_by="XM_054081017.1:119..4348"
                     /db_xref="GeneID:104058436"
ORIGIN      
        1 mfrrilqrtp grggsqssds dssatpgnav dvnsegsseg ficplcmksh gsaeelfkhy
       61 eaihnsgids thggeghlsp erdevsllrq evqdlqaslk eerwyseelk keleklqgqq
      121 qqhsksdglt tatstesler qleeiqvenf nikqmkdlfe qkaaqlstei vdlkskydee
      181 islregaeqk vtnltqelqk erntveylkt ellqrpgved vavlkkelvq vqtlmdkmtl
      241 erereseklk deckhlqaeq anseatinql raelakgpqe vavyvqelqk lqssvkeleq
      301 knqsltekll kkeqdytrle ekhnevsmsk knvqasfhqk dldcqqlqak lsaseasiqr
      361 lqtelgekge ashklkeels evetkyqhlk aeckqlqqqr eekeqhglql qselsqlhsk
      421 lleterqlge ahgrlkeqrq lsseklmdke qqvadlqlkl sraeeqlkek aanstelqhq
      481 ldkakqqhqe qqtlqqntta klreaqndle qvlrqigdkd qkiqnleall qkskenisll
      541 ekeredlyak iqagegetav lnqlqeknha lqiqvtqlte klknqseshk qaqenlheqv
      601 qeqkahlraa qdrvlslean vteltsqlne skekvsqldv qvkaktelll saeaskaaqr
      661 adlqnhldta qhalqdkqqe lnkvsvqldq vtaklnekqe ycaqleanlk eykekrlyle
      721 qkteelegql kkleadvlda kaskeqtlqe lqqqrqqste ldlrtaelsk qleaaretis
      781 sakldlqnks ealekakqqi skqeeekail kqnleksnqd tikqlkeldc kmqaataelq
      841 qtklekdtlf kdltatkdkl sknsesfkkr kdelekeiqk gkaavaemek scqelkhqlq
      901 lqtesvaker nelknslekk egiskqlsie ldsaraqvle iqsllkekek seqhlqgklr
      961 dlkesfeqkk khsetlqael ktallekael enklqqqsil saqelkaeka kladlqktye
     1021 khkenmeklq ldlygkesel latrqdlkst eeklalaqee lvssrnriag nnqqiqelkk
     1081 akltleqdas kkeqqlgekt kmlqdlqndr ilkekdlane kcrttelqei rnrlekesar
     1141 lgeelrackq efekevanlk dakqlliqqk lelqskidhm nsaleqekkt hqavkdqlkk
     1201 reeelkkeca eieaklhsek kdkeeesrkh eekenkltmq vtalnenlat mkkewqssqr
     1261 rvselekqtd dlrgdiavle atvqnnqder rallerciks egeieklqak lvemkkkldn
     1321 ttaamqelgr enqslqikht qalnrkwaed ndvqncmacg kgfsvtvrrh hcrqcgnifc
     1381 aecsaknalt psskkpvrvc dtcfndlqg
//
LOCUS       XP_053937192             656 aa            linear   VRT 09-MAR-2023
DEFINITION  probable ATP-dependent RNA helicase DDX17 [Cuculus canorus].
ACCESSION   XP_053937192
VERSION     XP_053937192.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081217.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..656
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..656
                     /product="probable ATP-dependent RNA helicase DDX17"
                     /calculated_mol_wt=72909
     Region          30..495
                     /region_name="DEAD-like_helicase_N"
                     /note="N-terminal helicase domain of the DEAD-box helicase
                     superfamily; cl28899"
                     /db_xref="CDD:475120"
     Site            order(110,112..114,117,135..142)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350808"
     Region          540..618
                     /region_name="Nucleoporin_FG"
                     /note="Nucleoporin FG repeat region; pfam13634"
                     /db_xref="CDD:463941"
     CDS             1..656
                     /gene="DDX17"
                     /coded_by="XM_054081217.1:281..2251"
                     /db_xref="GeneID:104065918"
ORIGIN      
        1 mrgfgdrgrd rdrggfgasr ggplppkkfg npgerlrkkk wdlselpkfe knfyvehpev
       61 arltpyevee lrrkkeitir gmegcpkpvf afhqcgfpqy vmdalmdqnf teptpiqcqg
      121 fplalsgrdm vgiaqtgsgk tlayllpaiv hinhqpyler gdgpiclvla ptrelaqqvq
      181 qvaddygkcs rlkstciygg apkgpqirdl ergveiciat pgrlidflea gktnlrrcty
      241 lvldeadrml dmgfepqirk ivdqirpdrq tlmwsatwpk evrqlaedfl qdyvqinvgn
      301 lelsanhnil qivdvcmese kdhkliqlme eimaekenkt iifvetkrrc ddltrrmrrd
      361 gwpamcihgd ksqperdwvl nefrsgkapi liatdvasrg ldvedvkfvi nydypnssed
      421 yvhrigrtar stnkgtaytf ftpgnlkqar elikvleean qainpklmql vdhrgggggg
      481 gggrsryrts ssvnnpnlmy qeecdrrlrg vkegrrdsga frdreragds yanganktyg
      541 saygspnsaf gaaqsqygya qgsygaaayg tsgygtaeys asgygastta atagrtsqst
      601 tqqqyagmvg rsgqqpqplm sqqfpqppgt nvmgymgqta tyqypppppp ppptrk
//
LOCUS       XP_009566718             343 aa            linear   VRT 09-MAR-2023
DEFINITION  meiotic recombination protein DMC1/LIM15 homolog isoform X1
            [Cuculus canorus].
ACCESSION   XP_009566718
VERSION     XP_009566718.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568423.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..343
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..343
                     /product="meiotic recombination protein DMC1/LIM15 homolog
                     isoform X1"
                     /calculated_mol_wt=38159
     Region          27..341
                     /region_name="recomb_DMC1"
                     /note="meiotic recombinase Dmc1; TIGR02238"
                     /db_xref="CDD:131292"
     CDS             1..343
                     /gene="DMC1"
                     /coded_by="XM_009568423.2:155..1186"
                     /db_xref="GeneID:104065889"
ORIGIN      
        1 mmkamedqvv qeepgyqdde eyffqdidll qkhginvadi kklksvgict ikgiqmttrr
       61 alcnvkglse akvdkikeaa nkliepgflt afeysekrkm vfhittgsqe fdkllgggie
      121 smaiteafge frtgktqlsh tlcvtaqlpg pngytggkii fidtentfrp drlrdiadrf
      181 svdhdavldn vlyaraytse hqmelldyva akfheeagif klliidsima lfrvdfsgrg
      241 elaerqqkla qmlsrlqkis eeynvavfvt nqmtadpgat mtfqadpkkp igghilahas
      301 ttriclrkgr gelriakiyd spempeneat faittggigd ake
//
LOCUS       XP_053937377             343 aa            linear   VRT 09-MAR-2023
DEFINITION  meiotic recombination protein DMC1/LIM15 homolog isoform X1
            [Cuculus canorus].
ACCESSION   XP_053937377
VERSION     XP_053937377.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081402.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..343
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..343
                     /product="meiotic recombination protein DMC1/LIM15 homolog
                     isoform X1"
                     /calculated_mol_wt=38159
     Region          27..341
                     /region_name="recomb_DMC1"
                     /note="meiotic recombinase Dmc1; TIGR02238"
                     /db_xref="CDD:131292"
     CDS             1..343
                     /gene="DMC1"
                     /coded_by="XM_054081402.1:228..1259"
                     /db_xref="GeneID:104065889"
ORIGIN      
        1 mmkamedqvv qeepgyqdde eyffqdidll qkhginvadi kklksvgict ikgiqmttrr
       61 alcnvkglse akvdkikeaa nkliepgflt afeysekrkm vfhittgsqe fdkllgggie
      121 smaiteafge frtgktqlsh tlcvtaqlpg pngytggkii fidtentfrp drlrdiadrf
      181 svdhdavldn vlyaraytse hqmelldyva akfheeagif klliidsima lfrvdfsgrg
      241 elaerqqkla qmlsrlqkis eeynvavfvt nqmtadpgat mtfqadpkkp igghilahas
      301 ttriclrkgr gelriakiyd spempeneat faittggigd ake
//
LOCUS       XP_053937459             282 aa            linear   VRT 09-MAR-2023
DEFINITION  meiotic recombination protein DMC1/LIM15 homolog isoform X2
            [Cuculus canorus].
ACCESSION   XP_053937459
VERSION     XP_053937459.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081484.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..282
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..282
                     /product="meiotic recombination protein DMC1/LIM15 homolog
                     isoform X2"
                     /calculated_mol_wt=31597
     Region          27..282
                     /region_name="recomb_DMC1"
                     /note="meiotic recombinase Dmc1; TIGR02238"
                     /db_xref="CDD:131292"
     CDS             1..282
                     /gene="DMC1"
                     /coded_by="XM_054081484.1:155..1003"
                     /db_xref="GeneID:104065889"
ORIGIN      
        1 mmkamedqvv qeepgyqdde eyffqdidll qkhginvadi kklksvgict ikgiqmttrr
       61 alcnvkglse akvdkikeaa nkliepgflt afeysekrkm vfhittgsqe fdkllgggie
      121 smaiteafge frtgktqlsh tlcvtaqlpg pngytggkii fidtentfrp drlrdiadrf
      181 svdhdavldn vlyaraytse hqmelldyva akfheeagif klliidsima lfrvdfsgrg
      241 elaerqqkla qmlsrlqkis eeynvavfvt nqmtadpgat mt
//
LOCUS       XP_009566717             214 aa            linear   VRT 09-MAR-2023
DEFINITION  ER lumen protein-retaining receptor 3 [Cuculus canorus].
ACCESSION   XP_009566717
VERSION     XP_009566717.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568422.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..214
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..214
                     /product="ER lumen protein-retaining receptor 3"
                     /calculated_mol_wt=24769
     Region          28..169
                     /region_name="ER_lumen_recept"
                     /note="ER lumen protein retaining receptor; pfam00810"
                     /db_xref="CDD:459945"
     CDS             1..214
                     /gene="KDELR3"
                     /coded_by="XM_009568422.2:362..1006"
                     /db_xref="GeneID:104065888"
ORIGIN      
        1 mnvfrilgdv shllaiiill lkivksqsca gisgksqilf alvfttryld lfttfisiyn
       61 timkvvflic ayitvymiyv kfrktfdsen dsfrlefllv pviglsflen ysftpleilw
      121 tfsiylesva ilpqlfmisk tgeaetitth ylfflglyra lyianwvwry ytesfydqia
      181 vvsgvvqtif ycdffylyvt kvlkgkklsl pmpv
//
LOCUS       XP_053937766            2792 aa            linear   VRT 09-MAR-2023
DEFINITION  small subunit processome component 20 homolog [Cuculus canorus].
ACCESSION   XP_053937766
VERSION     XP_053937766.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081791.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2792
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2792
                     /product="small subunit processome component 20 homolog"
                     /calculated_mol_wt=319271
     Region          914..1538
                     /region_name="DRIM"
                     /note="Down-regulated in metastasis; pfam07539"
                     /db_xref="CDD:462198"
     Region          1818..2034
                     /region_name="DUF6700"
                     /note="Domain of unknown function (DUF6700); pfam20416"
                     /db_xref="CDD:466565"
     CDS             1..2792
                     /gene="UTP20"
                     /coded_by="XM_054081791.1:88..8466"
                     /db_xref="GeneID:104067495"
ORIGIN      
        1 mkskpsahks gnthrfltfs erlsninidi ihridrtgsy teevetyfse alrkwrelnl
       61 tqhfvqfyne vankcqsfnq lvyyqnaivq slkthlqvkg slayqplldl vaqlardvqa
      121 dfyphfhdff laitklldtq dtellewaft slsylykylw rlmvkdihni yslystllah
      181 hklhirnfaa esfvflmrkv sdknaifnli lrdleehpek vegvgqlife mckgvrnmfh
      241 scaetglkli llklgpvtee eielpwvavg eafkqmiksa avhihkehfd ivfkclkesl
      301 ldlqrkitka nccmaseqie rilqaylilv ehangskism pedvcwilie mlqtpylsss
      361 ccktllntis afllaenvfl pdyvtteave kvfasgferr fildfseaif rmkqferhll
      421 tyfveyidhc fsgtdaqakd eamailakli lvkaepptsg smgfekyplf fskssircnt
      481 aqqtsktqgv pvldhvlsli rlpeeditdl sqawaalvvl phirpmnven ilpcvtsfid
      541 slftaidkgs lckgslfvac qavstllslm dsseilhllp vervknlvat fpsdpsvlll
      601 adlyytsltl cgcqkplsqg nlidlfeklh hnistgvskv rlltvrilnh fqdplsteve
      661 dddteellpl ftillqaelv patvndyrdk lvhlrklryd ivqsvipses lqevplryll
      721 gmlyinfspl wdpvielits hakemenkqf wkvlyehlek aatyaemelq neldeqeesi
      781 aetesempeg gvrtvfleql rtrtdcserl dhtnfrlllw kaldkfpdrv eprsrelspl
      841 llrfirneyy padslvapsq dlrkkiggtv aakeipseev ndvameeeee eeeeekeege
      901 ritvglpkrk trraaakqli ahlkvfskfs nprslfleqk lnalyiqlls hqdqnvqria
      961 ldcimtykhp hllpyrenlq rlledktfke eivhfsisee tsvvkmehrp dlipvlmril
     1021 ygrmrnktgs ktqgksaagt rmsivlrfla gslpeeirmf ldllfeavkq fsngpcqtav
     1081 lrsmseldla kvlplgrqhs lfnglevvlk nmghlihqyl peilqillcm tavvscilqq
     1141 rekvqprfin plknlrrlgl klvaeffsdy etysfsveei davfhavvwp qvcrlasesq
     1201 ysptfllkli hiwsknpryf pllakqkpdh pecdilsnvf avlsaknlse atsslvmdia
     1261 dsllnspdfe ptervsslsv tdcvvmvtgd ateeplslgc rlvlphvpai lqyfsktmlk
     1321 vekvkkkkyr aqvskelsil sriskfiqek sqnsvlvsll lpflyqtnme qgteidilet
     1381 vqnllrhcsn ptsflkplak lfsviqnkvs rhklclvfqt lseldselky itdvvklnaf
     1441 dprhlddidf dvrlsafqsi tahikemqav didflipvlh ncfytiqlgd malsdnaslc
     1501 ltsfihrlae inhteddyke liqhtllesv rrglksktes vqqdytslls cliqtfpanp
     1561 efqdmvqltn rhdpdmdffe nmkhmqihrr aralrklakq lteqklvlss kslqnyimpy
     1621 attaifnekm lkhenmvtas vevigavcrh lswsaylyhl khfihvlqtg qispklgvsl
     1681 letvleafhf dhetlekqll tienqeiaam dlepvveaee ameleqsdge eevaeknkgk
     1741 nlpekpaepe raaetpedae qvtkpvcflp rnkeelecli khiqdtvtvn ilpklhrciv
     1801 akvkrddehk lvksnvvndd evvriplafa mvrmmqclpq evmeanlpsi llkvctflrn
     1861 rfqeirdiar ntltkimevl gvryflyilk emqstlvhgy qlhvltftvn lllkglatrl
     1921 sagdldpcld ilieifnqel fgnvaeekev kgivskvmea rksksfdsye ilgkfigkgq
     1981 vtklilplke ilenttslki vrkvhealrh imaglifnsd mnaeslllls hglisenlpl
     2041 ltekakkkvd pppdprlqpe sclllqptpm rggqkarvss rtntyilvds glrllhmslk
     2101 rskvnsseeh alemldpfvq llidclksmd vkvitgalqs lvwilkfplp svstnleali
     2161 kqlflllkef aktgiakgqn fhlvvscfkc vtilvknaks qitskqlqvl lgfaeediyd
     2221 ssrqatafgl lkailsrkli vpeiddvlqk vaqmaitgqs epvrvqcrqi ylkyildypl
     2281 gdklkpnldf ilaqleyeye tgresalemi aylldmfpkd llhkycglff lslcmmmind
     2341 dsakckkmaa ltckallrki snekqdlmfs lvtewfhskk sshrrlaaqa cglfvevegv
     2401 mferrlkavl tliedeinpi kfediteeee ekaadrllfs flvlitklit dcnliqltkn
     2461 sdivnniwsh vqshlwyphs wvwltateif gllfasykpe dlvnkwrerk trkgkkasae
     2521 lsastvfltt eldkkmkelv fafchqlqsk fldlslgeqv iknllfvakv vyllapalee
     2581 skeaegelsc emeeqeased eeekdvsaqv dgereeteek gqpatlqwlm kklsvmakre
     2641 aayspkvplk rscifkflga isvdlgndri kpylptiltp lyrelnstya eqdptlknla
     2701 qeiidllkkl vgleafslaf ssvqkqanqk ramrkkqral qtvanpdiaa rrkmkrhknk
     2761 aetrkrkiel lrptfkakrp rshalkdlam ve
//
LOCUS       XP_053937875            2010 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear pore complex protein Nup205 [Cuculus canorus].
ACCESSION   XP_053937875
VERSION     XP_053937875.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081900.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2010
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2010
                     /product="nuclear pore complex protein Nup205"
                     /calculated_mol_wt=227833
     Region          165..1685
                     /region_name="Nup192"
                     /note="Nuclear pore complex scaffold, nucleoporins
                     186/192/205; pfam11894"
                     /db_xref="CDD:463387"
     CDS             1..2010
                     /gene="NUP205"
                     /coded_by="XM_054081900.1:239..6271"
                     /db_xref="GeneID:104063947"
ORIGIN      
        1 maaplavnsa aslwgpykdi wqtvmdaiwk rqpeaihhld qvlkkhksdf ialfrnppkn
       61 vqqhekiqka stegvaiqgq qgtrllpeql ireafilsdl fdigelaave lllagehqqp
      121 hfpgltrglv avllywdgkr cianslrtli qsrqgktwtl elsqelvsmt tqftddlmeq
      181 gltqkiltlv shidlnnefd klqrerglgs ekhrrevsdl ikecrqslae slfvwtcqsp
      241 lskddtlili sylekvtvea dgsldgvnls llmallycfd vsfleqvted redlmqrlpl
      301 laerhyiati htrlqesqpw klpglqatvr lawalalrgi sqlsdvtala efteadeama
      361 elavadnvfl fltesvvgse nfyqeefyir kihnlvtdfl almpmkvkql rnradedarm
      421 ihmsiqmgnd ppislrrdle hlmlliaely rkdpfnlela leywcpsepl qtstimesyl
      481 gvahqrppqr qvvlskfvrq mgdllpstiy ipylkmlrgl asgpqcahyc fsllkvngss
      541 haeniqgagg spvswehffh slmlyhehlr kdlpsadsvq yrhlplrgit qkeqdgliaf
      601 lqlttvivnw senarlalce hpqwtpvavi lgllqcsipp vlkaelletl tafgrspeia
      661 aslwqsleyt qilqtvrspg qrqavgieve lneiesrcee ypltrafcrl istlvessfp
      721 snlgaglrpp gfdpylqflr dsvflrfrtr ayrraaekwe vaevvlevfy kllrdyepql
      781 edfvdqyvel qgeeiiaykp pgfnlmyhll nespmlelsl slleegvkql dtyapfpgkk
      841 hlekavqycl gllnltlqke nlfmdllres hlslivtple qllqginprt kkadhvvnia
      901 rylyhgdsnp elafesakil cciscnsniq mklvddfthd qsisqklmag fvecldneda
      961 eelinpdeel epekkrarih hetrihilnl litslecspp slalyllgye lkkpvsttnl
     1021 qdpgvlgcpr tclhailnil ekgtktrngp tavqesphla elcyqviyql cacsdtsgpt
     1081 mrylrtsqdf lftqlqylpf sikeheistl nqmswlmkta aiemrvtsln rqrshtqrll
     1141 hlllddmpvk tyladgeggm edesrsvsgf lhfdtaskvr rkilsildsi dfsqdipepl
     1201 qldffdrvqi eqviancehk nargqvvcnv khlhrvlvae vnalqgmaai gqrplfmeei
     1261 ntilqyvver nkllqclhak rhaleswrql veiiltacpq dliqaedrql iirdllqdvh
     1321 dkildddaaq elmpvvagav ftltahlsqs vkteqkplal pmmgqsqyvl mldgsfttsp
     1381 gsegismgfa sigdsslhii lrklldfilk tgggfqrvrt hlygsllyyl qiaqrpdepd
     1441 tleaakktmw erltapedvf sklqrenmai iesygaalme vvcrdacdgh eigrmlalal
     1501 ldrivsvdkq qqwllylcns gylkvlvdsl adddltlqsl ltpqppllka lytyeskmaf
     1561 ltrvgkcqqg alellrsgvi vrlaqcqvyd mrpetdrqrm ygmrdppvfi papveryhqi
     1621 llpalqlcqv iltssmaqhl qaagqvlqfl ishsdtiqai lrcqdvsvgs lqelaaltgi
     1681 iskaalpgvl seldidineg mlvelqghig rfqrqclgll grfggsdrlr qfklqddnae
     1741 adrvnkkdei elamqqican vikyceslml qsapssqhav clftpslses tnrdgsrqdt
     1801 qapywhlpgl giivyllkqs tsdffsyyds hrqsvnklqn veqlppdeik elcqsvmpag
     1861 vdkistshky vlarrrlvkl innrakllsl csyiietclf ifwrhlehyl lhctptdsqd
     1921 pllssrmlfk kgrlqdsfgs esnldfsggl nrvsqhdieq lqieatnnfg eslqkklldi
     1981 eglyskvrsr ytfiqalvrr irgllrvsrt
//
LOCUS       XP_053937983             181 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP-ribosylation factor-like protein 1 [Cuculus canorus].
ACCESSION   XP_053937983
VERSION     XP_053937983.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082008.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..181
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..181
                     /product="ADP-ribosylation factor-like protein 1"
                     /calculated_mol_wt=20238
     Region          19..176
                     /region_name="Arl1"
                     /note="ADP ribosylation factor 1 (Arf1); cd04151"
                     /db_xref="CDD:206718"
     Site            24..31
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206718"
     Site            order(26..32,45,48,70,126..127,129,159..161)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206718"
     Site            order(26..27,31,35,47..54,76,81)
                     /site_type="other"
                     /note="putative GAP interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206718"
     Site            36..51
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206718"
     Site            order(48..52,57,67,71,77,79..81)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206718"
     Site            48
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206718"
     Site            order(50..51,64,80..81,83,115)
                     /site_type="active"
                     /note="effector interaction site [active]"
                     /db_xref="CDD:206718"
     Site            order(51..58,61..66)
                     /site_type="active"
                     /note="interswitch region [active]"
                     /db_xref="CDD:206718"
     Site            order(67..75,77..80)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206718"
     Site            67..70
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206718"
     Site            126..129
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206718"
     Site            159..161
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206718"
     CDS             1..181
                     /gene="ARL1"
                     /coded_by="XM_054082008.1:242..787"
                     /db_xref="GeneID:104067493"
ORIGIN      
        1 mggffstifs slfgtremri lilgldgagk ttilyrlqvg evvttiptig fnvetvtykn
       61 lkfqvwdlgg qtsirpywrc yysntdaviy vvdscdrdri gtskselvam leeeelkkai
      121 lvvfankqdm eqamtptema nalglpalkd rkwqifktsa tkgtgldeam ewlvealksr
      181 q
//
LOCUS       XP_053938095            1192 aa            linear   VRT 09-MAR-2023
DEFINITION  protein WWC3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053938095
VERSION     XP_053938095.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082120.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1192
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1192
                     /product="protein WWC3 isoform X1"
                     /calculated_mol_wt=135521
     Region          33..62
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          80..109
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          103..215
                     /region_name="THOC7"
                     /note="Tho complex subunit 7; pfam05615"
                     /db_xref="CDD:461692"
     Region          <183..442
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          701..824
                     /region_name="C2_Kibra"
                     /note="C2 domain found in Human protein Kibra; cd08680"
                     /db_xref="CDD:176062"
     CDS             1..1192
                     /gene="WWC3"
                     /coded_by="XM_054082120.1:208..3786"
                     /db_xref="GeneID:104054882"
ORIGIN      
        1 mpwlsggrrr rqqpgaaaqg ggqrgresse lplpagweea rdfdgrvfyi dhntrqtswi
       61 dprdritkpl tfadcvgdel plgwetvydq qigvyymdhi nqltqiedpr eqwrreqerm
      121 lkeylivaqe alnakkeiyq ikqqrfelaq eeyqqlhkmc eddsrsyass fsgfstntky
      181 dpyqikaeia srrdrlsrlk relaqmkqel qykekgvetl qeidrkmssa htnyrldeaq
      241 aimselrtir kaictgeker qdlmqslakl tdgfrnscci tdslqdlqhn ssllsdsclp
      301 qqhcdacsqt ditgefgfdd ktrlvdkvrl nwqyeeakkr vsniqqqlal leneswpgma
      361 eadrdrlqli kekeallqel qlisqqrrsp ediarleeek rrledeiqra ratsahgate
      421 rillqekrnc llmqleeatr ltsylhsqlk slsastltms sgssrgslas srgslassrg
      481 slssisftdi yglpqydksd sitdygqhlr fdiipfeslt kdvpyidpvg hsnfnkqrrs
      541 ldtpqslasl ssrsslssls ppsspldtpf lsasrdspla qmsegfeema sigalevlra
      601 qttalgdddm qgasssqtst ypvdneglre mgpqltsvqt ggavtlrgds grrserrarr
      661 vsaclsdhsl asdsgvfeal skrnedleep vygdaansee pqihvgflhd sgsecllvhv
      721 vqlknftnlv vkenckihvr vylpplesgt pttycskale fqtplifnev fripvhssvl
      781 klkslqlyic svdhqqqeel lgiaqinltd aensgemqlh wysvqmftgs dpqrvksksq
      841 ceesiprssg nvttvktfaf qdavtallar ttaqleaver elaeervkle yteeeileme
      901 rkedqaeais erswqaesvd sgcsnctqts ppypepfcgd slagrmfatq agqyssgkmq
      961 pppikvdket ntedlfpeev pilpkertsr rprgsafvrs stivrsqtfs pgarsqyvcr
     1021 lyrsdsdsst lprkspfvrn tlerrtlryk qqscrsslae lmartsldle ldlqasrtrq
     1081 rqlneeicvl relrqrleda qlrgqtdlph wvlrddrfrn llkeaerqtr qtkfehhqeq
     1141 aaekmlkkas keiyqlrgqn qkepiqvqtf rekiafftrp rinipplpad dv
//
LOCUS       XP_053938181            1191 aa            linear   VRT 09-MAR-2023
DEFINITION  protein WWC3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053938181
VERSION     XP_053938181.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082206.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1191
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1191
                     /product="protein WWC3 isoform X2"
                     /calculated_mol_wt=135393
     Region          33..62
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          80..109
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          103..215
                     /region_name="THOC7"
                     /note="Tho complex subunit 7; pfam05615"
                     /db_xref="CDD:461692"
     Region          <183..442
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          701..824
                     /region_name="C2_Kibra"
                     /note="C2 domain found in Human protein Kibra; cd08680"
                     /db_xref="CDD:176062"
     CDS             1..1191
                     /gene="WWC3"
                     /coded_by="XM_054082206.1:208..3783"
                     /db_xref="GeneID:104054882"
ORIGIN      
        1 mpwlsggrrr rqqpgaaaqg ggqrgresse lplpagweea rdfdgrvfyi dhntrqtswi
       61 dprdritkpl tfadcvgdel plgwetvydq qigvyymdhi nqltqiedpr eqwrreqerm
      121 lkeylivaqe alnakkeiyq ikqqrfelaq eeyqqlhkmc eddsrsyass fsgfstntky
      181 dpyqikaeia srrdrlsrlk relaqmkqel qykekgvetl qeidrkmssa htnyrldeaq
      241 aimselrtir kaictgeker qdlmqslakl tdgfrnscci tdslqdlqhn ssllsdsclp
      301 qqhcdacsqt ditgefgfdd ktrlvdkvrl nwqyeeakkr vsniqqqlal leneswpgma
      361 eadrdrlqli kekeallqel qlisqqrrsp ediarleeek rrledeiqra ratsahgate
      421 rillqekrnc llmqleeatr ltsylhsqlk slsastltms sgssrgslas srgslassrg
      481 slssisftdi yglpqydksd sitdygqhlr fdiipfeslt kdvpyidpvg hsnfnkqrrs
      541 ldtpqslasl ssrsslssls ppsspldtpf lsasrdspla qmsegfeema sigalevlra
      601 qttalgdddm qgasssqtst ypvdneglre mgpqltsvqt ggavtlrgds grrserrarr
      661 vsaclsdhsl asdsgvfeal skrnedleep vygdaansee pqihvgflhd sgsecllvhv
      721 vqlknftnlv vkenckihvr vylpplesgt pttycskale fqtplifnev fripvhssvl
      781 klkslqlyic svdhqqqeel lgiaqinltd aensgemqlh wysvqmftgs dpqrvksksq
      841 ceesiprssg nvttvktfaf qdavtallar ttaqleaver elaeervkle yteeeileme
      901 rkedqaeais erswqaesvd sgcsnctqts ppypepfcgd slagrmfatq agqyssgkmq
      961 pppikvdket ntedlfpeev pilpkertsr rprgsafvrs stivrsqtfs pgarsqyvcr
     1021 lyrsdsdsst lprkspfvrn tlerrtlryk qscrsslael martsldlel dlqasrtrqr
     1081 qlneeicvlr elrqrledaq lrgqtdlphw vlrddrfrnl lkeaerqtrq tkfehhqeqa
     1141 aekmlkkask eiyqlrgqnq kepiqvqtfr ekiafftrpr inipplpadd v
//
LOCUS       XP_009554241            1188 aa            linear   VRT 09-MAR-2023
DEFINITION  protein WWC3 isoform X3 [Cuculus canorus].
ACCESSION   XP_009554241
VERSION     XP_009554241.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009555946.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554241.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1188
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1188
                     /product="protein WWC3 isoform X3"
                     /calculated_mol_wt=135028
     Region          33..62
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          80..109
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          103..215
                     /region_name="THOC7"
                     /note="Tho complex subunit 7; pfam05615"
                     /db_xref="CDD:461692"
     Region          <183..442
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          701..824
                     /region_name="C2_Kibra"
                     /note="C2 domain found in Human protein Kibra; cd08680"
                     /db_xref="CDD:176062"
     CDS             1..1188
                     /gene="WWC3"
                     /coded_by="XM_009555946.2:187..3753"
                     /db_xref="GeneID:104054882"
ORIGIN      
        1 mpwlsggrrr rqqpgaaaqg ggqrgresse lplpagweea rdfdgrvfyi dhntrqtswi
       61 dprdritkpl tfadcvgdel plgwetvydq qigvyymdhi nqltqiedpr eqwrreqerm
      121 lkeylivaqe alnakkeiyq ikqqrfelaq eeyqqlhkmc eddsrsyass fsgfstntky
      181 dpyqikaeia srrdrlsrlk relaqmkqel qykekgvetl qeidrkmssa htnyrldeaq
      241 aimselrtir kaictgeker qdlmqslakl tdgfrnscci tdslqdlqhn ssllsdsclp
      301 qqhcdacsqt ditgefgfdd ktrlvdkvrl nwqyeeakkr vsniqqqlal leneswpgma
      361 eadrdrlqli kekeallqel qlisqqrrsp ediarleeek rrledeiqra ratsahgate
      421 rillqekrnc llmqleeatr ltsylhsqlk slsastltms sgssrgslas srgslassrg
      481 slssisftdi yglpqydksd sitdygqhlr fdiipfeslt kdvpyidpvg hsnfnkqrrs
      541 ldtpqslasl ssrsslssls ppsspldtpf lsasrdspla qmsegfeema sigalevlra
      601 qttalgdddm qgasssqtst ypvdneglre mgpqltsvqt ggavtlrgds grrserrarr
      661 vsaclsdhsl asdsgvfeal skrnedleep vygdaansee pqihvgflhd sgsecllvhv
      721 vqlknftnlv vkenckihvr vylpplesgt pttycskale fqtplifnev fripvhssvl
      781 klkslqlyic svdhqqqeel lgiaqinltd aensgemqlh wysvqmftgs dpqrvksksq
      841 ceesiprssg nvttvktdav tallarttaq leaverelae ervkleytee eilemerked
      901 qaeaisersw qaesvdsgcs nctqtsppyp epfcgdslag rmfatqagqy ssgkmqpppi
      961 kvdketnted lfpeevpilp kertsrrprg safvrsstiv rsqtfspgar sqyvcrlyrs
     1021 dsdsstlprk spfvrntler rtlrykqqsc rsslaelmar tsldleldlq asrtrqrqln
     1081 eeicvlrelr qrledaqlrg qtdlphwvlr ddrfrnllke aerqtrqtkf ehhqeqaaek
     1141 mlkkaskeiy qlrgqnqkep iqvqtfreki afftrprini pplpaddv
//
LOCUS       XP_009554242            1187 aa            linear   VRT 09-MAR-2023
DEFINITION  protein WWC3 isoform X4 [Cuculus canorus].
ACCESSION   XP_009554242
VERSION     XP_009554242.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009555947.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554242.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1187
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1187
                     /product="protein WWC3 isoform X4"
                     /calculated_mol_wt=134900
     Region          33..62
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          80..109
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          103..215
                     /region_name="THOC7"
                     /note="Tho complex subunit 7; pfam05615"
                     /db_xref="CDD:461692"
     Region          <183..442
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          701..824
                     /region_name="C2_Kibra"
                     /note="C2 domain found in Human protein Kibra; cd08680"
                     /db_xref="CDD:176062"
     CDS             1..1187
                     /gene="WWC3"
                     /coded_by="XM_009555947.2:188..3751"
                     /db_xref="GeneID:104054882"
ORIGIN      
        1 mpwlsggrrr rqqpgaaaqg ggqrgresse lplpagweea rdfdgrvfyi dhntrqtswi
       61 dprdritkpl tfadcvgdel plgwetvydq qigvyymdhi nqltqiedpr eqwrreqerm
      121 lkeylivaqe alnakkeiyq ikqqrfelaq eeyqqlhkmc eddsrsyass fsgfstntky
      181 dpyqikaeia srrdrlsrlk relaqmkqel qykekgvetl qeidrkmssa htnyrldeaq
      241 aimselrtir kaictgeker qdlmqslakl tdgfrnscci tdslqdlqhn ssllsdsclp
      301 qqhcdacsqt ditgefgfdd ktrlvdkvrl nwqyeeakkr vsniqqqlal leneswpgma
      361 eadrdrlqli kekeallqel qlisqqrrsp ediarleeek rrledeiqra ratsahgate
      421 rillqekrnc llmqleeatr ltsylhsqlk slsastltms sgssrgslas srgslassrg
      481 slssisftdi yglpqydksd sitdygqhlr fdiipfeslt kdvpyidpvg hsnfnkqrrs
      541 ldtpqslasl ssrsslssls ppsspldtpf lsasrdspla qmsegfeema sigalevlra
      601 qttalgdddm qgasssqtst ypvdneglre mgpqltsvqt ggavtlrgds grrserrarr
      661 vsaclsdhsl asdsgvfeal skrnedleep vygdaansee pqihvgflhd sgsecllvhv
      721 vqlknftnlv vkenckihvr vylpplesgt pttycskale fqtplifnev fripvhssvl
      781 klkslqlyic svdhqqqeel lgiaqinltd aensgemqlh wysvqmftgs dpqrvksksq
      841 ceesiprssg nvttvktdav tallarttaq leaverelae ervkleytee eilemerked
      901 qaeaisersw qaesvdsgcs nctqtsppyp epfcgdslag rmfatqagqy ssgkmqpppi
      961 kvdketnted lfpeevpilp kertsrrprg safvrsstiv rsqtfspgar sqyvcrlyrs
     1021 dsdsstlprk spfvrntler rtlrykqscr sslaelmart sldleldlqa srtrqrqlne
     1081 eicvlrelrq rledaqlrgq tdlphwvlrd drfrnllkea erqtrqtkfe hhqeqaaekm
     1141 lkkaskeiyq lrgqnqkepi qvqtfrekia fftrprinip plpaddv
//
LOCUS       XP_053938423            1186 aa            linear   VRT 09-MAR-2023
DEFINITION  protein WWC3 isoform X5 [Cuculus canorus].
ACCESSION   XP_053938423
VERSION     XP_053938423.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082448.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1186
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1186
                     /product="protein WWC3 isoform X5"
                     /calculated_mol_wt=134892
     Region          33..62
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          80..109
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          103..215
                     /region_name="THOC7"
                     /note="Tho complex subunit 7; pfam05615"
                     /db_xref="CDD:461692"
     Region          <183..442
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          701..824
                     /region_name="C2_Kibra"
                     /note="C2 domain found in Human protein Kibra; cd08680"
                     /db_xref="CDD:176062"
     CDS             1..1186
                     /gene="WWC3"
                     /coded_by="XM_054082448.1:208..3768"
                     /db_xref="GeneID:104054882"
ORIGIN      
        1 mpwlsggrrr rqqpgaaaqg ggqrgresse lplpagweea rdfdgrvfyi dhntrqtswi
       61 dprdritkpl tfadcvgdel plgwetvydq qigvyymdhi nqltqiedpr eqwrreqerm
      121 lkeylivaqe alnakkeiyq ikqqrfelaq eeyqqlhkmc eddsrsyass fsgfstntky
      181 dpyqikaeia srrdrlsrlk relaqmkqel qykekgvetl qeidrkmssa htnyrldeaq
      241 aimselrtir kaictgeker qdlmqslakl tdgfrnscci tdslqdlqhn ssllsdsclp
      301 qqhcdacsqt ditgefgfdd ktrlvdkvrl nwqyeeakkr vsniqqqlal leneswpgma
      361 eadrdrlqli kekeallqel qlisqqrrsp ediarleeek rrledeiqra ratsahgate
      421 rillqekrnc llmqleeatr ltsylhsqlk slsastltms sgssrgslas srgslassrg
      481 slssisftdi yglpqydksd sitdygqhlr fdiipfeslt kdvpyidpvg hsnfnkqrrs
      541 ldtpqslasl ssrsslssls ppsspldtpf lsasrdspla qmsegfeema sigalevlra
      601 qttalgdddm qgasssqtst ypvdneglre mgpqltsvqt ggavtlrgds grrserrarr
      661 vsaclsdhsl asdsgvfeal skrnedleep vygdaansee pqihvgflhd sgsecllvhv
      721 vqlknftnlv vkenckihvr vylpplesgt pttycskale fqtplifnev fripvhssvl
      781 klkslqlyic svdhqqqeel lgiaqinltd aensgemqlh wysvqmftgs dpqrvksksq
      841 ceesiprssg nfafqdavta llarttaqle averelaeer vkleyteeei lemerkedqa
      901 eaiserswqa esvdsgcsnc tqtsppypep fcgdslagrm fatqagqyss gkmqpppikv
      961 dketntedlf peevpilpke rtsrrprgsa fvrsstivrs qtfspgarsq yvcrlyrsds
     1021 dsstlprksp fvrntlerrt lrykqqscrs slaelmarts ldleldlqas rtrqrqlnee
     1081 icvlrelrqr ledaqlrgqt dlphwvlrdd rfrnllkeae rqtrqtkfeh hqeqaaekml
     1141 kkaskeiyql rgqnqkepiq vqtfrekiaf ftrprinipp lpaddv
//
LOCUS       XP_053938495            1182 aa            linear   VRT 09-MAR-2023
DEFINITION  protein WWC3 isoform X6 [Cuculus canorus].
ACCESSION   XP_053938495
VERSION     XP_053938495.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082520.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1182
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1182
                     /product="protein WWC3 isoform X6"
                     /calculated_mol_wt=134398
     Region          33..62
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          80..109
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          103..215
                     /region_name="THOC7"
                     /note="Tho complex subunit 7; pfam05615"
                     /db_xref="CDD:461692"
     Region          <183..442
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          701..824
                     /region_name="C2_Kibra"
                     /note="C2 domain found in Human protein Kibra; cd08680"
                     /db_xref="CDD:176062"
     CDS             1..1182
                     /gene="WWC3"
                     /coded_by="XM_054082520.1:208..3756"
                     /db_xref="GeneID:104054882"
ORIGIN      
        1 mpwlsggrrr rqqpgaaaqg ggqrgresse lplpagweea rdfdgrvfyi dhntrqtswi
       61 dprdritkpl tfadcvgdel plgwetvydq qigvyymdhi nqltqiedpr eqwrreqerm
      121 lkeylivaqe alnakkeiyq ikqqrfelaq eeyqqlhkmc eddsrsyass fsgfstntky
      181 dpyqikaeia srrdrlsrlk relaqmkqel qykekgvetl qeidrkmssa htnyrldeaq
      241 aimselrtir kaictgeker qdlmqslakl tdgfrnscci tdslqdlqhn ssllsdsclp
      301 qqhcdacsqt ditgefgfdd ktrlvdkvrl nwqyeeakkr vsniqqqlal leneswpgma
      361 eadrdrlqli kekeallqel qlisqqrrsp ediarleeek rrledeiqra ratsahgate
      421 rillqekrnc llmqleeatr ltsylhsqlk slsastltms sgssrgslas srgslassrg
      481 slssisftdi yglpqydksd sitdygqhlr fdiipfeslt kdvpyidpvg hsnfnkqrrs
      541 ldtpqslasl ssrsslssls ppsspldtpf lsasrdspla qmsegfeema sigalevlra
      601 qttalgdddm qgasssqtst ypvdneglre mgpqltsvqt ggavtlrgds grrserrarr
      661 vsaclsdhsl asdsgvfeal skrnedleep vygdaansee pqihvgflhd sgsecllvhv
      721 vqlknftnlv vkenckihvr vylpplesgt pttycskale fqtplifnev fripvhssvl
      781 klkslqlyic svdhqqqeel lgiaqinltd aensgemqlh wysvqmftgs dpqrvksksq
      841 ceesiprssg ndavtallar ttaqleaver elaeervkle yteeeileme rkedqaeais
      901 erswqaesvd sgcsnctqts ppypepfcgd slagrmfatq agqyssgkmq pppikvdket
      961 ntedlfpeev pilpkertsr rprgsafvrs stivrsqtfs pgarsqyvcr lyrsdsdsst
     1021 lprkspfvrn tlerrtlryk qqscrsslae lmartsldle ldlqasrtrq rqlneeicvl
     1081 relrqrleda qlrgqtdlph wvlrddrfrn llkeaerqtr qtkfehhqeq aaekmlkkas
     1141 keiyqlrgqn qkepiqvqtf rekiafftrp rinipplpad dv
//
LOCUS       XP_053938580            1168 aa            linear   VRT 09-MAR-2023
DEFINITION  protein WWC3 isoform X7 [Cuculus canorus].
ACCESSION   XP_053938580
VERSION     XP_053938580.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082605.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1168
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1168
                     /product="protein WWC3 isoform X7"
                     /calculated_mol_wt=133004
     Region          33..62
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          80..109
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          <183..442
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          677..800
                     /region_name="C2_Kibra"
                     /note="C2 domain found in Human protein Kibra; cd08680"
                     /db_xref="CDD:176062"
     CDS             1..1168
                     /gene="WWC3"
                     /coded_by="XM_054082605.1:208..3714"
                     /db_xref="GeneID:104054882"
ORIGIN      
        1 mpwlsggrrr rqqpgaaaqg ggqrgresse lplpagweea rdfdgrvfyi dhntrqtswi
       61 dprdritkpl tfadcvgdel plgwetvydq qigvyymdhi nqltqiedpr eqwrreqerm
      121 lkeylivaqe alnakkeiyq ikqqrfelaq eeyqqlhkmc eddsrsyass fsgfstntky
      181 dpyqikaeia srrdrlsrlk relaqmkqel qykekgvetl qeidrkmssa htnyrldeaq
      241 aimselrtir kaictgeker qdlmqslakl tdgfrnscci tdslqdlqhn ssllsdsclp
      301 qqhcdacsqt ditgefgfdd ktrlvdkvrl nwqyeeakkr vsniqqqlal leneswpgma
      361 eadrdrlqli kekeallqel qlisqqrrsp ediarleeek rrledeiqra ratsahgate
      421 rillqekrnc llmqleeatr ltsylhsqlk slsastltms sgssrgslas srgslassrg
      481 slssisftdi yglpqydksd sitdygqhlr fdiipfeslt kdvpyidpvg hsnfnkqrrs
      541 ldtpqslasl ssrsslssls ppsspldtpf lsasrdspla qmsegfeema sigalevlra
      601 qttalgdddm qgasssqtst ypvdneglre mgpqltsvqt ggavtlrgds grrserrarn
      661 edleepvygd aanseepqih vgflhdsgse cllvhvvqlk nftnlvvken ckihvrvylp
      721 plesgtptty cskalefqtp lifnevfrip vhssvlklks lqlyicsvdh qqqeellgia
      781 qinltdaens gemqlhwysv qmftgsdpqr vksksqcees iprssgnvtt vktfafqdav
      841 tallarttaq leaverelae ervkleytee eilemerked qaeaisersw qaesvdsgcs
      901 nctqtsppyp epfcgdslag rmfatqagqy ssgkmqpppi kvdketnted lfpeevpilp
      961 kertsrrprg safvrsstiv rsqtfspgar sqyvcrlyrs dsdsstlprk spfvrntler
     1021 rtlrykqqsc rsslaelmar tsldleldlq asrtrqrqln eeicvlrelr qrledaqlrg
     1081 qtdlphwvlr ddrfrnllke aerqtrqtkf ehhqeqaaek mlkkaskeiy qlrgqnqkep
     1141 iqvqtfreki afftrprini pplpaddv
//
LOCUS       XP_053938686             765 aa            linear   VRT 09-MAR-2023
DEFINITION  H(+)/Cl(-) exchange transporter 4 isoform X1 [Cuculus canorus].
ACCESSION   XP_053938686
VERSION     XP_053938686.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082711.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..765
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..765
                     /product="H(+)/Cl(-) exchange transporter 4 isoform X1"
                     /calculated_mol_wt=85342
     Region          83..589
                     /region_name="ClC_3_like"
                     /note="ClC-3-like chloride channel proteins. This CD
                     includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was
                     initially cloned from rat kidney. Expression of ClC-3
                     produces outwardly-rectifying Cl currents that are
                     inhibited by protein kinase C activation. It has...;
                     cd03684"
                     /db_xref="CDD:239656"
     Site            order(185..189,227..231,472..476,577)
                     /site_type="active"
                     /note="putative Cl- selectivity filter [active]"
                     /db_xref="CDD:239656"
     Site            229
                     /site_type="active"
                     /note="putative pore gating glutamate residue [active]"
                     /db_xref="CDD:239656"
     Site            286
                     /site_type="active"
                     /note="putative H+/Cl- coupling transport residue
                     [active]"
                     /db_xref="CDD:239656"
     Region          600..750
                     /region_name="CBS_pair_voltage-gated_CLC_euk_bac"
                     /note="Two tandem repeats of the cystathionine
                     beta-synthase (CBS pair) domains associated with the
                     voltage gated CLC (chloride channel) in eukaryotes and
                     bacteria; cd04591"
                     /db_xref="CDD:341367"
     Site            order(606,613..615,638..640,729,741,743,745..746,749)
                     /site_type="other"
                     /note="ligand binding site II [chemical binding]"
                     /db_xref="CDD:341367"
     Region          606..701
                     /region_name="CBS repeat"
                     /note="CBS repeat [structural motif]"
                     /db_xref="CDD:341367"
     Site            order(638,653,657..658,661,707,729..731,745)
                     /site_type="other"
                     /note="putative ligand binding site I [chemical binding]"
                     /db_xref="CDD:341367"
     Region          707..749
                     /region_name="CBS repeat"
                     /note="CBS repeat [structural motif]"
                     /db_xref="CDD:341367"
     CDS             1..765
                     /gene="CLCN4"
                     /coded_by="XM_054082711.1:60..2357"
                     /db_xref="GeneID:104054883"
ORIGIN      
        1 mmdpnmvnag dmngsgnlmd fldepfpdvg tyedfhtidw lreksrdtdr hrkitskske
       61 siwefiksll dawsgwvvml liglmagtla gvidlavdwm tdlkegvcls afwysheqcc
      121 wtssettfnd rdkcpqwqkw sellvgqseg asayilnyfl yimwalcfaf lavslvrvfa
      181 pyacgsgipe iktilsgfii rgylgkwtll iktvtlvlvv ssglslgkeg plvhvacccg
      241 nffsslfsky sknegkrrev lsaaaaagvs vafgapiggv lfsleevsyy fplktlwrsf
      301 faalvaaftl rsinpfgnsr lvlfyveyht pwymaelfpf illgvfgglw gtlfircnia
      361 wcrrrkttrl gkypvleviv itaitaiiay pnpytrrsts eliselfndc galessqlcd
      421 yindpnmtrp vddipdrpag pgvytamwql alalvfkivi tiftfgmkip sglfipsmav
      481 gaiagrmvgi gveqlayhhh dwiifrnwcr pgadcvtpgl yamvgaaacl ggvtrmtvsl
      541 vvimfeltgg leyivplmaa avtskwvada fgkegiyeah ihlngypfld vkdefthrtl
      601 atdvmrprrg eaplsvltqd smtvedvetl iketdyngfp vvvskdserl igfaqrreli
      661 laiknarqrq dgvvsnsivy ftedppelpp nsphplklrr ilnlspftvt dhtpmetvvd
      721 ifrklglrqc lvtrsgrllg iitkkdvlrh maqmanqdpe simfn
//
LOCUS       XP_009554243             760 aa            linear   VRT 09-MAR-2023
DEFINITION  H(+)/Cl(-) exchange transporter 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_009554243
VERSION     XP_009554243.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009555948.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..760
                     /product="H(+)/Cl(-) exchange transporter 4 isoform X2"
                     /calculated_mol_wt=84753
     Region          78..584
                     /region_name="ClC_3_like"
                     /note="ClC-3-like chloride channel proteins. This CD
                     includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was
                     initially cloned from rat kidney. Expression of ClC-3
                     produces outwardly-rectifying Cl currents that are
                     inhibited by protein kinase C activation. It has...;
                     cd03684"
                     /db_xref="CDD:239656"
     Site            order(180..184,222..226,467..471,572)
                     /site_type="active"
                     /note="putative Cl- selectivity filter [active]"
                     /db_xref="CDD:239656"
     Site            224
                     /site_type="active"
                     /note="putative pore gating glutamate residue [active]"
                     /db_xref="CDD:239656"
     Site            281
                     /site_type="active"
                     /note="putative H+/Cl- coupling transport residue
                     [active]"
                     /db_xref="CDD:239656"
     Region          595..745
                     /region_name="CBS_pair_voltage-gated_CLC_euk_bac"
                     /note="Two tandem repeats of the cystathionine
                     beta-synthase (CBS pair) domains associated with the
                     voltage gated CLC (chloride channel) in eukaryotes and
                     bacteria; cd04591"
                     /db_xref="CDD:341367"
     Site            order(601,608..610,633..635,724,736,738,740..741,744)
                     /site_type="other"
                     /note="ligand binding site II [chemical binding]"
                     /db_xref="CDD:341367"
     Region          601..696
                     /region_name="CBS repeat"
                     /note="CBS repeat [structural motif]"
                     /db_xref="CDD:341367"
     Site            order(633,648,652..653,656,702,724..726,740)
                     /site_type="other"
                     /note="putative ligand binding site I [chemical binding]"
                     /db_xref="CDD:341367"
     Region          702..744
                     /region_name="CBS repeat"
                     /note="CBS repeat [structural motif]"
                     /db_xref="CDD:341367"
     CDS             1..760
                     /gene="CLCN4"
                     /coded_by="XM_009555948.2:158..2440"
                     /db_xref="GeneID:104054883"
ORIGIN      
        1 mvnagdmngs gnlmdfldep fpdvgtyedf htidwlreks rdtdrhrkit skskesiwef
       61 ikslldawsg wvvmlliglm agtlagvidl avdwmtdlke gvclsafwys heqccwtsse
      121 ttfndrdkcp qwqkwsellv gqsegasayi lnyflyimwa lcfaflavsl vrvfapyacg
      181 sgipeiktil sgfiirgylg kwtlliktvt lvlvvssgls lgkegplvhv acccgnffss
      241 lfskyskneg krrevlsaaa aagvsvafga piggvlfsle evsyyfplkt lwrsffaalv
      301 aaftlrsinp fgnsrlvlfy veyhtpwyma elfpfillgv fgglwgtlfi rcniawcrrr
      361 kttrlgkypv levivitait aiiaypnpyt rrstselise lfndcgales sqlcdyindp
      421 nmtrpvddip drpagpgvyt amwqlalalv fkivitiftf gmkipsglfi psmavgaiag
      481 rmvgigveql ayhhhdwiif rnwcrpgadc vtpglyamvg aaaclggvtr mtvslvvimf
      541 eltggleyiv plmaaavtsk wvadafgkeg iyeahihlng ypfldvkdef thrtlatdvm
      601 rprrgeapls vltqdsmtve dvetliketd yngfpvvvsk dserligfaq rrelilaikn
      661 arqrqdgvvs nsivyftedp pelppnsphp lklrrilnls pftvtdhtpm etvvdifrkl
      721 glrqclvtrs grllgiitkk dvlrhmaqma nqdpesimfn
//
LOCUS       XP_053938838             760 aa            linear   VRT 09-MAR-2023
DEFINITION  H(+)/Cl(-) exchange transporter 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053938838
VERSION     XP_053938838.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082863.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..760
                     /product="H(+)/Cl(-) exchange transporter 4 isoform X2"
                     /calculated_mol_wt=84753
     Region          78..584
                     /region_name="ClC_3_like"
                     /note="ClC-3-like chloride channel proteins. This CD
                     includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was
                     initially cloned from rat kidney. Expression of ClC-3
                     produces outwardly-rectifying Cl currents that are
                     inhibited by protein kinase C activation. It has...;
                     cd03684"
                     /db_xref="CDD:239656"
     Site            order(180..184,222..226,467..471,572)
                     /site_type="active"
                     /note="putative Cl- selectivity filter [active]"
                     /db_xref="CDD:239656"
     Site            224
                     /site_type="active"
                     /note="putative pore gating glutamate residue [active]"
                     /db_xref="CDD:239656"
     Site            281
                     /site_type="active"
                     /note="putative H+/Cl- coupling transport residue
                     [active]"
                     /db_xref="CDD:239656"
     Region          595..745
                     /region_name="CBS_pair_voltage-gated_CLC_euk_bac"
                     /note="Two tandem repeats of the cystathionine
                     beta-synthase (CBS pair) domains associated with the
                     voltage gated CLC (chloride channel) in eukaryotes and
                     bacteria; cd04591"
                     /db_xref="CDD:341367"
     Site            order(601,608..610,633..635,724,736,738,740..741,744)
                     /site_type="other"
                     /note="ligand binding site II [chemical binding]"
                     /db_xref="CDD:341367"
     Region          601..696
                     /region_name="CBS repeat"
                     /note="CBS repeat [structural motif]"
                     /db_xref="CDD:341367"
     Site            order(633,648,652..653,656,702,724..726,740)
                     /site_type="other"
                     /note="putative ligand binding site I [chemical binding]"
                     /db_xref="CDD:341367"
     Region          702..744
                     /region_name="CBS repeat"
                     /note="CBS repeat [structural motif]"
                     /db_xref="CDD:341367"
     CDS             1..760
                     /gene="CLCN4"
                     /coded_by="XM_054082863.1:1130..3412"
                     /db_xref="GeneID:104054883"
ORIGIN      
        1 mvnagdmngs gnlmdfldep fpdvgtyedf htidwlreks rdtdrhrkit skskesiwef
       61 ikslldawsg wvvmlliglm agtlagvidl avdwmtdlke gvclsafwys heqccwtsse
      121 ttfndrdkcp qwqkwsellv gqsegasayi lnyflyimwa lcfaflavsl vrvfapyacg
      181 sgipeiktil sgfiirgylg kwtlliktvt lvlvvssgls lgkegplvhv acccgnffss
      241 lfskyskneg krrevlsaaa aagvsvafga piggvlfsle evsyyfplkt lwrsffaalv
      301 aaftlrsinp fgnsrlvlfy veyhtpwyma elfpfillgv fgglwgtlfi rcniawcrrr
      361 kttrlgkypv levivitait aiiaypnpyt rrstselise lfndcgales sqlcdyindp
      421 nmtrpvddip drpagpgvyt amwqlalalv fkivitiftf gmkipsglfi psmavgaiag
      481 rmvgigveql ayhhhdwiif rnwcrpgadc vtpglyamvg aaaclggvtr mtvslvvimf
      541 eltggleyiv plmaaavtsk wvadafgkeg iyeahihlng ypfldvkdef thrtlatdvm
      601 rprrgeapls vltqdsmtve dvetliketd yngfpvvvsk dserligfaq rrelilaikn
      661 arqrqdgvvs nsivyftedp pelppnsphp lklrrilnls pftvtdhtpm etvvdifrkl
      721 glrqclvtrs grllgiitkk dvlrhmaqma nqdpesimfn
//
LOCUS       XP_053938950             969 aa            linear   VRT 09-MAR-2023
DEFINITION  integrator complex subunit 4 isoform X1 [Cuculus canorus].
ACCESSION   XP_053938950
VERSION     XP_053938950.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082975.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..969
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..969
                     /product="integrator complex subunit 4 isoform X1"
                     /calculated_mol_wt=108662
     Region          112..137
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          152..183
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          183..310
                     /region_name="HEAT"
                     /note="HEAT repeat [General function prediction only];
                     COG1413"
                     /db_xref="CDD:441023"
     Region          200..222
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Site            order(214..215,218,221..222,251..252,255,258..259,262,
                     301..302,305,308..309,311,340..341,344,347..348,393..394,
                     397)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:293787"
     Region          234..262
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          283..312
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          321..348
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          361..399
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          <376..467
                     /region_name="HEAT"
                     /note="HEAT repeat [General function prediction only];
                     COG1413"
                     /db_xref="CDD:441023"
     Region          412..442
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          448..470
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          481..508
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     CDS             1..969
                     /gene="INTS4"
                     /coded_by="XM_054082975.1:81..2990"
                     /db_xref="GeneID:104064140"
ORIGIN      
        1 maahlkkrvy eeftkvvqqq hedlstkklr ltkpsksaal hvdlckatsp adalqyllqf
       61 trkpvevesv egvvrilleh yykendasvr lkiasllgll sktagfspdc imddainalq
      121 nekshqvlaq lldtllvigt kltenppirm rlvevackhl tdsshgvrnk clqligclgp
      181 vekglakege sqaakdvqki igdhfndqdp rvrtaaikam lqlherglkl hqaiysqack
      241 lladdyeqvr saavqliwvl sqlypesivp ipssneeirl vddafgkich mvsdgswvvr
      301 vqaakllgsm qqvsshfleq tldkklmsdl rrkrtahera kelyssgefs sgrkwgddap
      361 keeidtgavn liesgacgaf vhgledemye vriaavealc mlaqsspsfa ekcldflvdm
      421 fndeieevrl qsihtmrkis nnitlredql dtvlavleds srdirealhe llcctnvstk
      481 egihlalvel lknltkyptd resiwkclkf lgsrhptlvl plvpellsth pffdtpepdm
      541 ddpayiavlv lifnaakscp tmpalfsdht frhyaylrds lshlvpplkl pgrklvsspv
      601 sptitphedp sqqflhqsle rvynlqhldp qgiqelleft irdlqrlgel qselagmadf
      661 tatylrcqll likalqeklw nmaaplylkq nalasaaakq ileetykmef mysgvegrqv
      721 viihhmrlqa kalqlivtar ttrgveplfg mcekflqevd sfqrcfisel phmqgsfvdk
      781 lldlmprlvt skpsevvkil qttlrqstfl hlplpeqlhr ataniieptg esdnplrfts
      841 glvvaldvda tlehvqdpqg tikvqvlypd gqaqlihpkp adfrnpgpgr hrlitqvyls
      901 htawtepcqi evrlllafns nrskastkip ksawseslea lpssengieg tipfskpvkv
      961 yimpkparr
//
LOCUS       XP_009564732             968 aa            linear   VRT 09-MAR-2023
DEFINITION  integrator complex subunit 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_009564732
VERSION     XP_009564732.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566437.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..968
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..968
                     /product="integrator complex subunit 4 isoform X2"
                     /calculated_mol_wt=108534
     Region          111..136
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          151..182
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          182..309
                     /region_name="HEAT"
                     /note="HEAT repeat [General function prediction only];
                     COG1413"
                     /db_xref="CDD:441023"
     Region          199..221
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Site            order(213..214,217,220..221,250..251,254,257..258,261,
                     300..301,304,307..308,310,339..340,343,346..347,392..393,
                     396)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:293787"
     Region          233..261
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          282..311
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          320..347
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          360..398
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          <375..466
                     /region_name="HEAT"
                     /note="HEAT repeat [General function prediction only];
                     COG1413"
                     /db_xref="CDD:441023"
     Region          411..441
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          447..469
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          480..507
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     CDS             1..968
                     /gene="INTS4"
                     /coded_by="XM_009566437.2:37..2943"
                     /db_xref="GeneID:104064140"
ORIGIN      
        1 maahlkkrvy eeftkvvqqh edlstkklrl tkpsksaalh vdlckatspa dalqyllqft
       61 rkpvevesve gvvrillehy ykendasvrl kiasllglls ktagfspdci mddainalqn
      121 ekshqvlaql ldtllvigtk ltenppirmr lvevackhlt dsshgvrnkc lqligclgpv
      181 ekglakeges qaakdvqkii gdhfndqdpr vrtaaikaml qlherglklh qaiysqackl
      241 laddyeqvrs aavqliwvls qlypesivpi pssneeirlv ddafgkichm vsdgswvvrv
      301 qaakllgsmq qvsshfleqt ldkklmsdlr rkrtaherak elyssgefss grkwgddapk
      361 eeidtgavnl iesgacgafv hgledemyev riaavealcm laqsspsfae kcldflvdmf
      421 ndeieevrlq sihtmrkisn nitlredqld tvlavledss rdirealhel lcctnvstke
      481 gihlalvell knltkyptdr esiwkclkfl gsrhptlvlp lvpellsthp ffdtpepdmd
      541 dpayiavlvl ifnaakscpt mpalfsdhtf rhyaylrdsl shlvpplklp grklvsspvs
      601 ptitphedps qqflhqsler vynlqhldpq giqellefti rdlqrlgelq selagmadft
      661 atylrcqlll ikalqeklwn maaplylkqn alasaaakqi leetykmefm ysgvegrqvv
      721 iihhmrlqak alqlivtart trgveplfgm cekflqevds fqrcfiselp hmqgsfvdkl
      781 ldlmprlvts kpsevvkilq ttlrqstflh lplpeqlhra taniieptge sdnplrftsg
      841 lvvaldvdat lehvqdpqgt ikvqvlypdg qaqlihpkpa dfrnpgpgrh rlitqvylsh
      901 tawtepcqie vrlllafnsn rskastkipk sawsesleal pssengiegt ipfskpvkvy
      961 impkparr
//
LOCUS       XP_053939123             952 aa            linear   VRT 09-MAR-2023
DEFINITION  integrator complex subunit 4 isoform X3 [Cuculus canorus].
ACCESSION   XP_053939123
VERSION     XP_053939123.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083148.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..952
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..952
                     /product="integrator complex subunit 4 isoform X3"
                     /calculated_mol_wt=106646
     Region          183..293
                     /region_name="HEAT"
                     /note="HEAT repeat [General function prediction only];
                     COG1413"
                     /db_xref="CDD:441023"
     Region          200..221
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          222..245
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          266..295
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          304..331
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          <359..450
                     /region_name="HEAT"
                     /note="HEAT repeat [General function prediction only];
                     COG1413"
                     /db_xref="CDD:441023"
     Region          359..386
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          395..425
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          431..453
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          464..491
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     CDS             1..952
                     /gene="INTS4"
                     /coded_by="XM_054083148.1:81..2939"
                     /db_xref="GeneID:104064140"
ORIGIN      
        1 maahlkkrvy eeftkvvqqq hedlstkklr ltkpsksaal hvdlckatsp adalqyllqf
       61 trkpvevesv egvvrilleh yykendasvr lkiasllgll sktagfspdc imddainalq
      121 nekshqvlaq lldtllvigt kltenppirm rlvevackhl tdsshgvrnk clqligclgp
      181 vekglakege sqaakdvqki igdhfndqdp rvrtaaikam acklladdye qvrsaavqli
      241 wvlsqlypes ivpipssnee irlvddafgk ichmvsdgsw vvrvqaakll gsmqqvsshf
      301 leqtldkklm sdlrrkrtah erakelyssg efssgrkwgd dapkeeidtg avnliesgac
      361 gafvhglede myevriaave alcmlaqssp sfaekcldfl vdmfndeiee vrlqsihtmr
      421 kisnnitlre dqldtvlavl edssrdirea lhellcctnv stkegihlal vellknltky
      481 ptdresiwkc lkflgsrhpt lvlplvpell sthpffdtpe pdmddpayia vlvlifnaak
      541 scptmpalfs dhtfrhyayl rdslshlvpp lklpgrklvs spvsptitph edpsqqflhq
      601 slervynlqh ldpqgiqell eftirdlqrl gelqselagm adftatylrc qlllikalqe
      661 klwnmaaply lkqnalasaa akqileetyk mefmysgveg rqvviihhmr lqakalqliv
      721 tarttrgvep lfgmcekflq evdsfqrcfi selphmqgsf vdklldlmpr lvtskpsevv
      781 kilqttlrqs tflhlplpeq lhrataniie ptgesdnplr ftsglvvald vdatlehvqd
      841 pqgtikvqvl ypdgqaqlih pkpadfrnpg pgrhrlitqv ylshtawtep cqievrllla
      901 fnsnrskast kipksawses lealpsseng iegtipfskp vkvyimpkpa rr
//
LOCUS       XP_053939225             122 aa            linear   VRT 09-MAR-2023
DEFINITION  mth938 domain-containing protein [Cuculus canorus].
ACCESSION   XP_053939225
VERSION     XP_053939225.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083250.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..122
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..122
                     /product="mth938 domain-containing protein"
                     /calculated_mol_wt=12979
     Region          5..120
                     /region_name="Mth938"
                     /note="Mth938 domain. Mth938 is a hypothetical protein
                     encoded by the Methanobacterium thermoautotrophicum (Mth)
                     genome. This protein crystallizes as a dimer, although it
                     is monomeric in solution, with one disulfide bond in each
                     monomer. The function of the...; cd05126"
                     /db_xref="CDD:240162"
     CDS             1..122
                     /gene="AAMDC"
                     /coded_by="XM_054083250.1:4872..5240"
                     /db_xref="GeneID:104064139"
ORIGIN      
        1 msspeiasls wgqmkvkgcs ttykdckvwp ggsrtwdwre tgtghspgvq padleevvkk
       61 gvktvvigrg msealqvpps tvdylkkngi dvlvlqteka veeynalaaq gvkvggvfhs
      121 tc
//
LOCUS       XP_053939309             122 aa            linear   VRT 09-MAR-2023
DEFINITION  mth938 domain-containing protein [Cuculus canorus].
ACCESSION   XP_053939309
VERSION     XP_053939309.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083334.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..122
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..122
                     /product="mth938 domain-containing protein"
                     /calculated_mol_wt=12979
     Region          5..120
                     /region_name="Mth938"
                     /note="Mth938 domain. Mth938 is a hypothetical protein
                     encoded by the Methanobacterium thermoautotrophicum (Mth)
                     genome. This protein crystallizes as a dimer, although it
                     is monomeric in solution, with one disulfide bond in each
                     monomer. The function of the...; cd05126"
                     /db_xref="CDD:240162"
     CDS             1..122
                     /gene="AAMDC"
                     /coded_by="XM_054083334.1:79..447"
                     /db_xref="GeneID:104064139"
ORIGIN      
        1 msspeiasls wgqmkvkgcs ttykdckvwp ggsrtwdwre tgtghspgvq padleevvkk
       61 gvktvvigrg msealqvpps tvdylkkngi dvlvlqteka veeynalaaq gvkvggvfhs
      121 tc
//
LOCUS       XP_053939393             122 aa            linear   VRT 09-MAR-2023
DEFINITION  mth938 domain-containing protein [Cuculus canorus].
ACCESSION   XP_053939393
VERSION     XP_053939393.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083418.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..122
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..122
                     /product="mth938 domain-containing protein"
                     /calculated_mol_wt=12979
     Region          5..120
                     /region_name="Mth938"
                     /note="Mth938 domain. Mth938 is a hypothetical protein
                     encoded by the Methanobacterium thermoautotrophicum (Mth)
                     genome. This protein crystallizes as a dimer, although it
                     is monomeric in solution, with one disulfide bond in each
                     monomer. The function of the...; cd05126"
                     /db_xref="CDD:240162"
     CDS             1..122
                     /gene="AAMDC"
                     /coded_by="XM_054083418.1:72..440"
                     /db_xref="GeneID:104064139"
ORIGIN      
        1 msspeiasls wgqmkvkgcs ttykdckvwp ggsrtwdwre tgtghspgvq padleevvkk
       61 gvktvvigrg msealqvpps tvdylkkngi dvlvlqteka veeynalaaq gvkvggvfhs
      121 tc
//
LOCUS       XP_053939460             122 aa            linear   VRT 09-MAR-2023
DEFINITION  mth938 domain-containing protein [Cuculus canorus].
ACCESSION   XP_053939460
VERSION     XP_053939460.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083485.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..122
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..122
                     /product="mth938 domain-containing protein"
                     /calculated_mol_wt=12979
     Region          5..120
                     /region_name="Mth938"
                     /note="Mth938 domain. Mth938 is a hypothetical protein
                     encoded by the Methanobacterium thermoautotrophicum (Mth)
                     genome. This protein crystallizes as a dimer, although it
                     is monomeric in solution, with one disulfide bond in each
                     monomer. The function of the...; cd05126"
                     /db_xref="CDD:240162"
     CDS             1..122
                     /gene="AAMDC"
                     /coded_by="XM_054083485.1:74..442"
                     /db_xref="GeneID:104064139"
ORIGIN      
        1 msspeiasls wgqmkvkgcs ttykdckvwp ggsrtwdwre tgtghspgvq padleevvkk
       61 gvktvvigrg msealqvpps tvdylkkngi dvlvlqteka veeynalaaq gvkvggvfhs
      121 tc
//
LOCUS       XP_053939557             494 aa            linear   VRT 09-MAR-2023
DEFINITION  CUGBP Elav-like family member 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053939557
VERSION     XP_053939557.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083582.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..494
                     /product="CUGBP Elav-like family member 2 isoform X1"
                     /calculated_mol_wt=52495
     Region          15..98
                     /region_name="RRM1_CELF1_2_Bruno"
                     /note="RNA recognition motif 1 (RRM1) found in CUGBP
                     Elav-like family member CELF-1, CELF-2, Drosophila
                     melanogaster Bruno protein and similar proteins; cd12631"
                     /db_xref="CDD:410040"
     Site            order(19,21..22,25,46..49,51..52,59..61,63,93,95,97..98)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410040"
     Region          107..187
                     /region_name="RRM2_CELF1_2"
                     /note="RNA recognition motif 2 (RRM2) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12634"
                     /db_xref="CDD:410042"
     Site            order(109,111,113..114,117,136,138,140,148..150,152,
                     178..179,182,184,186..187)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410042"
     Region          402..493
                     /region_name="RRM3_CELF1_2"
                     /note="RNA recognition motif 3 (RRM3) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12638"
                     /db_xref="CDD:241082"
     CDS             1..494
                     /gene="CELF2"
                     /coded_by="XM_054083582.1:40..1524"
                     /db_xref="GeneID:104066327"
ORIGIN      
        1 mngaldhsdq pdpdaikmfv gqiprswsek elkelfepyg avyqinvlrd rsqnppqskg
       61 ccfvtfytrk aaleaqnalh niktlpgmhh piqmkpadse ksnavedrkl figmvskkcn
      121 endirvmfsp fgqieecril rgpdglsrgc afvtfstram aqnaikamhq sqtmegcssp
      181 ivvkfadtqk dkeqrrlqqq laqqmqqlnt atwgnltglg gltpqylall qqatsssnlg
      241 afsgiqqmag mnalqlqnla tlaaaaaaaq tsatttnanp lstttgalga ltspvaasta
      301 nstagaamns ltslgtlqgl agatvglnni nalagtvnia qmlsgmaaln gglgatgltn
      361 gtagtmdalt qaysgiqqya aaalptlysq sllqqqsaag sqkegpegan lfiyhlpqef
      421 gdqdilqmfm pfgnvisakv fidkqtnlsk cfgfvsydnp vsaqaaiqam ngfqigmkrl
      481 kvqlkrsknd skpy
//
LOCUS       XP_053939620             494 aa            linear   VRT 09-MAR-2023
DEFINITION  CUGBP Elav-like family member 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053939620
VERSION     XP_053939620.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083645.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..494
                     /product="CUGBP Elav-like family member 2 isoform X1"
                     /calculated_mol_wt=52495
     Region          15..98
                     /region_name="RRM1_CELF1_2_Bruno"
                     /note="RNA recognition motif 1 (RRM1) found in CUGBP
                     Elav-like family member CELF-1, CELF-2, Drosophila
                     melanogaster Bruno protein and similar proteins; cd12631"
                     /db_xref="CDD:410040"
     Site            order(19,21..22,25,46..49,51..52,59..61,63,93,95,97..98)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410040"
     Region          107..187
                     /region_name="RRM2_CELF1_2"
                     /note="RNA recognition motif 2 (RRM2) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12634"
                     /db_xref="CDD:410042"
     Site            order(109,111,113..114,117,136,138,140,148..150,152,
                     178..179,182,184,186..187)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410042"
     Region          402..493
                     /region_name="RRM3_CELF1_2"
                     /note="RNA recognition motif 3 (RRM3) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12638"
                     /db_xref="CDD:241082"
     CDS             1..494
                     /gene="CELF2"
                     /coded_by="XM_054083645.1:39..1523"
                     /db_xref="GeneID:104066327"
ORIGIN      
        1 mngaldhsdq pdpdaikmfv gqiprswsek elkelfepyg avyqinvlrd rsqnppqskg
       61 ccfvtfytrk aaleaqnalh niktlpgmhh piqmkpadse ksnavedrkl figmvskkcn
      121 endirvmfsp fgqieecril rgpdglsrgc afvtfstram aqnaikamhq sqtmegcssp
      181 ivvkfadtqk dkeqrrlqqq laqqmqqlnt atwgnltglg gltpqylall qqatsssnlg
      241 afsgiqqmag mnalqlqnla tlaaaaaaaq tsatttnanp lstttgalga ltspvaasta
      301 nstagaamns ltslgtlqgl agatvglnni nalagtvnia qmlsgmaaln gglgatgltn
      361 gtagtmdalt qaysgiqqya aaalptlysq sllqqqsaag sqkegpegan lfiyhlpqef
      421 gdqdilqmfm pfgnvisakv fidkqtnlsk cfgfvsydnp vsaqaaiqam ngfqigmkrl
      481 kvqlkrsknd skpy
//
LOCUS       XP_053939689             490 aa            linear   VRT 09-MAR-2023
DEFINITION  CUGBP Elav-like family member 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053939689
VERSION     XP_053939689.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083714.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..490
                     /product="CUGBP Elav-like family member 2 isoform X2"
                     /calculated_mol_wt=52110
     Region          15..98
                     /region_name="RRM1_CELF1_2_Bruno"
                     /note="RNA recognition motif 1 (RRM1) found in CUGBP
                     Elav-like family member CELF-1, CELF-2, Drosophila
                     melanogaster Bruno protein and similar proteins; cd12631"
                     /db_xref="CDD:410040"
     Site            order(19,21..22,25,46..49,51..52,59..61,63,93,95,97..98)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410040"
     Region          107..187
                     /region_name="RRM2_CELF1_2"
                     /note="RNA recognition motif 2 (RRM2) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12634"
                     /db_xref="CDD:410042"
     Site            order(109,111,113..114,117,136,138,140,148..150,152,
                     178..179,182,184,186..187)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410042"
     Region          398..489
                     /region_name="RRM3_CELF1_2"
                     /note="RNA recognition motif 3 (RRM3) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12638"
                     /db_xref="CDD:241082"
     CDS             1..490
                     /gene="CELF2"
                     /coded_by="XM_054083714.1:39..1511"
                     /db_xref="GeneID:104066327"
ORIGIN      
        1 mngaldhsdq pdpdaikmfv gqiprswsek elkelfepyg avyqinvlrd rsqnppqskg
       61 ccfvtfytrk aaleaqnalh niktlpgmhh piqmkpadse ksnavedrkl figmvskkcn
      121 endirvmfsp fgqieecril rgpdglsrgc afvtfstram aqnaikamhq sqtmegcssp
      181 ivvkfadtqk dkeqrrlqqq laqqmqqlnt atwgnltglg gltpqylall qqatsssnlg
      241 afsgiqqmag mnalqlqnla tlaaaaaaaq tsatttnanp lstttgalga ltspvaasta
      301 nstagaamns ltslgtlqgl agatvglnni nalavaqmls gmaalngglg atgltngtag
      361 tmdaltqays giqqyaaaal ptlysqsllq qqsaagsqke gpeganlfiy hlpqefgdqd
      421 ilqmfmpfgn visakvfidk qtnlskcfgf vsydnpvsaq aaiqamngfq igmkrlkvql
      481 krskndskpy
//
LOCUS       XP_053939756             488 aa            linear   VRT 09-MAR-2023
DEFINITION  CUGBP Elav-like family member 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053939756
VERSION     XP_053939756.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083781.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..488
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..488
                     /product="CUGBP Elav-like family member 2 isoform X3"
                     /calculated_mol_wt=51881
     Region          15..98
                     /region_name="RRM1_CELF1_2_Bruno"
                     /note="RNA recognition motif 1 (RRM1) found in CUGBP
                     Elav-like family member CELF-1, CELF-2, Drosophila
                     melanogaster Bruno protein and similar proteins; cd12631"
                     /db_xref="CDD:410040"
     Site            order(19,21..22,25,46..49,51..52,59..61,63,93,95,97..98)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410040"
     Region          107..187
                     /region_name="RRM2_CELF1_2"
                     /note="RNA recognition motif 2 (RRM2) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12634"
                     /db_xref="CDD:410042"
     Site            order(109,111,113..114,117,136,138,140,148..150,152,
                     178..179,182,184,186..187)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410042"
     Region          396..487
                     /region_name="RRM3_CELF1_2"
                     /note="RNA recognition motif 3 (RRM3) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12638"
                     /db_xref="CDD:241082"
     CDS             1..488
                     /gene="CELF2"
                     /coded_by="XM_054083781.1:39..1505"
                     /db_xref="GeneID:104066327"
ORIGIN      
        1 mngaldhsdq pdpdaikmfv gqiprswsek elkelfepyg avyqinvlrd rsqnppqskg
       61 ccfvtfytrk aaleaqnalh niktlpgmhh piqmkpadse ksnavedrkl figmvskkcn
      121 endirvmfsp fgqieecril rgpdglsrgc afvtfstram aqnaikamhq sqtmegcssp
      181 ivvkfadtqk dkeqrrlqqq laqqmqqlnt atwgnltglg gltpqylall qqatsssnlg
      241 afsgiqqmag mnalqlqnla tlaaaaaaaq tsatttnanp lstttgalga ltspvaasta
      301 nstagaamns ltslgtlqgl agatvglnni nalagtvnsm aalngglgat gltngtagtm
      361 daltqaysgi qqyaaaalpt lysqsllqqq saagsqkegp eganlfiyhl pqefgdqdil
      421 qmfmpfgnvi sakvfidkqt nlskcfgfvs ydnpvsaqaa iqamngfqig mkrlkvqlkr
      481 skndskpy
//
LOCUS       XP_053939844             536 aa            linear   VRT 09-MAR-2023
DEFINITION  CUGBP Elav-like family member 2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053939844
VERSION     XP_053939844.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083869.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..536
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..536
                     /product="CUGBP Elav-like family member 2 isoform X4"
                     /calculated_mol_wt=57153
     Region          57..140
                     /region_name="RRM1_CELF1_2_Bruno"
                     /note="RNA recognition motif 1 (RRM1) found in CUGBP
                     Elav-like family member CELF-1, CELF-2, Drosophila
                     melanogaster Bruno protein and similar proteins; cd12631"
                     /db_xref="CDD:410040"
     Site            order(61,63..64,67,88..91,93..94,101..103,105,135,137,
                     139..140)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410040"
     Region          149..229
                     /region_name="RRM2_CELF1_2"
                     /note="RNA recognition motif 2 (RRM2) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12634"
                     /db_xref="CDD:410042"
     Site            order(151,153,155..156,159,178,180,182,190..192,194,
                     220..221,224,226,228..229)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410042"
     Region          444..535
                     /region_name="RRM3_CELF1_2"
                     /note="RNA recognition motif 3 (RRM3) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12638"
                     /db_xref="CDD:241082"
     CDS             1..536
                     /gene="CELF2"
                     /coded_by="XM_054083869.1:204..1814"
                     /db_xref="GeneID:104066327"
ORIGIN      
        1 mfertselaf venigaesmr cpksavtmrn eelllsngta nkmngaldhs dqpdpdaikm
       61 fvgqiprsws ekelkelfep ygavyqinvl rdrsqnppqs kgccfvtfyt rkaaleaqna
      121 lhniktlpgm hhpiqmkpad seksnavedr klfigmvskk cnendirvmf spfgqieecr
      181 ilrgpdglsr gcafvtfstr amaqnaikam hqsqtmegcs spivvkfadt qkdkeqrrlq
      241 qqlaqqmqql ntatwgnltg lggltpqyla llqqatsssn lgafsgiqqm agmnalqlqn
      301 latlaaaaaa aqtsatttna nplstttgal galtspvaas tanstagaam nsltslgtlq
      361 glagatvgln ninalagtvn iaqmlsgmaa lngglgatgl tngtagtmda ltqaysgiqq
      421 yaaaalptly sqsllqqqsa agsqkegpeg anlfiyhlpq efgdqdilqm fmpfgnvisa
      481 kvfidkqtnl skcfgfvsyd npvsaqaaiq amngfqigmk rlkvqlkrsk ndskpy
//
LOCUS       XP_053939929             532 aa            linear   VRT 09-MAR-2023
DEFINITION  CUGBP Elav-like family member 2 isoform X5 [Cuculus canorus].
ACCESSION   XP_053939929
VERSION     XP_053939929.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083954.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..532
                     /product="CUGBP Elav-like family member 2 isoform X5"
                     /calculated_mol_wt=56768
     Region          57..140
                     /region_name="RRM1_CELF1_2_Bruno"
                     /note="RNA recognition motif 1 (RRM1) found in CUGBP
                     Elav-like family member CELF-1, CELF-2, Drosophila
                     melanogaster Bruno protein and similar proteins; cd12631"
                     /db_xref="CDD:410040"
     Site            order(61,63..64,67,88..91,93..94,101..103,105,135,137,
                     139..140)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410040"
     Region          149..229
                     /region_name="RRM2_CELF1_2"
                     /note="RNA recognition motif 2 (RRM2) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12634"
                     /db_xref="CDD:410042"
     Site            order(151,153,155..156,159,178,180,182,190..192,194,
                     220..221,224,226,228..229)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410042"
     Region          440..531
                     /region_name="RRM3_CELF1_2"
                     /note="RNA recognition motif 3 (RRM3) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12638"
                     /db_xref="CDD:241082"
     CDS             1..532
                     /gene="CELF2"
                     /coded_by="XM_054083954.1:200..1798"
                     /db_xref="GeneID:104066327"
ORIGIN      
        1 mfertselaf venigaesmr cpksavtmrn eelllsngta nkmngaldhs dqpdpdaikm
       61 fvgqiprsws ekelkelfep ygavyqinvl rdrsqnppqs kgccfvtfyt rkaaleaqna
      121 lhniktlpgm hhpiqmkpad seksnavedr klfigmvskk cnendirvmf spfgqieecr
      181 ilrgpdglsr gcafvtfstr amaqnaikam hqsqtmegcs spivvkfadt qkdkeqrrlq
      241 qqlaqqmqql ntatwgnltg lggltpqyla llqqatsssn lgafsgiqqm agmnalqlqn
      301 latlaaaaaa aqtsatttna nplstttgal galtspvaas tanstagaam nsltslgtlq
      361 glagatvgln ninalavaqm lsgmaalngg lgatgltngt agtmdaltqa ysgiqqyaaa
      421 alptlysqsl lqqqsaagsq kegpeganlf iyhlpqefgd qdilqmfmpf gnvisakvfi
      481 dkqtnlskcf gfvsydnpvs aqaaiqamng fqigmkrlkv qlkrskndsk py
//
LOCUS       XP_053940010             530 aa            linear   VRT 09-MAR-2023
DEFINITION  CUGBP Elav-like family member 2 isoform X6 [Cuculus canorus].
ACCESSION   XP_053940010
VERSION     XP_053940010.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084035.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..530
                     /product="CUGBP Elav-like family member 2 isoform X6"
                     /calculated_mol_wt=56540
     Region          57..140
                     /region_name="RRM1_CELF1_2_Bruno"
                     /note="RNA recognition motif 1 (RRM1) found in CUGBP
                     Elav-like family member CELF-1, CELF-2, Drosophila
                     melanogaster Bruno protein and similar proteins; cd12631"
                     /db_xref="CDD:410040"
     Site            order(61,63..64,67,88..91,93..94,101..103,105,135,137,
                     139..140)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410040"
     Region          149..229
                     /region_name="RRM2_CELF1_2"
                     /note="RNA recognition motif 2 (RRM2) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12634"
                     /db_xref="CDD:410042"
     Site            order(151,153,155..156,159,178,180,182,190..192,194,
                     220..221,224,226,228..229)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410042"
     Region          438..529
                     /region_name="RRM3_CELF1_2"
                     /note="RNA recognition motif 3 (RRM3) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12638"
                     /db_xref="CDD:241082"
     CDS             1..530
                     /gene="CELF2"
                     /coded_by="XM_054084035.1:201..1793"
                     /db_xref="GeneID:104066327"
ORIGIN      
        1 mfertselaf venigaesmr cpksavtmrn eelllsngta nkmngaldhs dqpdpdaikm
       61 fvgqiprsws ekelkelfep ygavyqinvl rdrsqnppqs kgccfvtfyt rkaaleaqna
      121 lhniktlpgm hhpiqmkpad seksnavedr klfigmvskk cnendirvmf spfgqieecr
      181 ilrgpdglsr gcafvtfstr amaqnaikam hqsqtmegcs spivvkfadt qkdkeqrrlq
      241 qqlaqqmqql ntatwgnltg lggltpqyla llqqatsssn lgafsgiqqm agmnalqlqn
      301 latlaaaaaa aqtsatttna nplstttgal galtspvaas tanstagaam nsltslgtlq
      361 glagatvgln ninalagtvn smaalngglg atgltngtag tmdaltqays giqqyaaaal
      421 ptlysqsllq qqsaagsqke gpeganlfiy hlpqefgdqd ilqmfmpfgn visakvfidk
      481 qtnlskcfgf vsydnpvsaq aaiqamngfq igmkrlkvql krskndskpy
//
LOCUS       XP_053940089             530 aa            linear   VRT 09-MAR-2023
DEFINITION  CUGBP Elav-like family member 2 isoform X7 [Cuculus canorus].
ACCESSION   XP_053940089
VERSION     XP_053940089.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084114.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..530
                     /product="CUGBP Elav-like family member 2 isoform X7"
                     /calculated_mol_wt=56350
     Region          51..134
                     /region_name="RRM1_CELF1_2_Bruno"
                     /note="RNA recognition motif 1 (RRM1) found in CUGBP
                     Elav-like family member CELF-1, CELF-2, Drosophila
                     melanogaster Bruno protein and similar proteins; cd12631"
                     /db_xref="CDD:410040"
     Site            order(55,57..58,61,82..85,87..88,95..97,99,129,131,
                     133..134)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410040"
     Region          143..223
                     /region_name="RRM2_CELF1_2"
                     /note="RNA recognition motif 2 (RRM2) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12634"
                     /db_xref="CDD:410042"
     Site            order(145,147,149..150,153,172,174,176,184..186,188,
                     214..215,218,220,222..223)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410042"
     Region          438..529
                     /region_name="RRM3_CELF1_2"
                     /note="RNA recognition motif 3 (RRM3) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12638"
                     /db_xref="CDD:241082"
     CDS             1..530
                     /gene="CELF2"
                     /coded_by="XM_054084114.1:140..1732"
                     /db_xref="GeneID:104066327"
ORIGIN      
        1 mvsiisdldp lkswkvlret atelsgtlps ngtankmnga ldhsdqpdpd aikmfvgqip
       61 rswsekelke lfepygavyq invlrdrsqn ppqskgccfv tfytrkaale aqnalhnikt
      121 lpgmhhpiqm kpadseksna vedrklfigm vskkcnendi rvmfspfgqi eecrilrgpd
      181 glsrgcafvt fstramaqna ikamhqsqtm egcsspivvk fadtqkdkeq rrlqqqlaqq
      241 mqqlntatwg nltglggltp qylallqqat sssnlgafsg iqqmagmnal qlqnlatlaa
      301 aaaaaqtsat ttnanplstt tgalgaltsp vaastansta gaamnsltsl gtlqglagat
      361 vglnninala gtvniaqmls gmaalngglg atgltngtag tmdaltqays giqqyaaaal
      421 ptlysqsllq qqsaagsqke gpeganlfiy hlpqefgdqd ilqmfmpfgn visakvfidk
      481 qtnlskcfgf vsydnpvsaq aaiqamngfq igmkrlkvql krskndskpy
//
LOCUS       XP_053940174             526 aa            linear   VRT 09-MAR-2023
DEFINITION  CUGBP Elav-like family member 2 isoform X8 [Cuculus canorus].
ACCESSION   XP_053940174
VERSION     XP_053940174.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084199.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..526
                     /product="CUGBP Elav-like family member 2 isoform X8"
                     /calculated_mol_wt=56138
     Region          57..140
                     /region_name="RRM1_CELF1_2_Bruno"
                     /note="RNA recognition motif 1 (RRM1) found in CUGBP
                     Elav-like family member CELF-1, CELF-2, Drosophila
                     melanogaster Bruno protein and similar proteins; cd12631"
                     /db_xref="CDD:410040"
     Site            order(61,63..64,67,88..91,93..94,101..103,105,135,137,
                     139..140)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410040"
     Region          149..229
                     /region_name="RRM2_CELF1_2"
                     /note="RNA recognition motif 2 (RRM2) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12634"
                     /db_xref="CDD:410042"
     Site            order(151,153,155..156,159,178,180,182,190..192,194,
                     220..221,224,226,228..229)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410042"
     Region          434..525
                     /region_name="RRM3_CELF1_2"
                     /note="RNA recognition motif 3 (RRM3) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12638"
                     /db_xref="CDD:241082"
     CDS             1..526
                     /gene="CELF2"
                     /coded_by="XM_054084199.1:190..1770"
                     /db_xref="GeneID:104066327"
ORIGIN      
        1 mfertselaf venigaesmr cpksavtmrn eelllsngta nkmngaldhs dqpdpdaikm
       61 fvgqiprsws ekelkelfep ygavyqinvl rdrsqnppqs kgccfvtfyt rkaaleaqna
      121 lhniktlpgm hhpiqmkpad seksnavedr klfigmvskk cnendirvmf spfgqieecr
      181 ilrgpdglsr gcafvtfstr amaqnaikam hqsqtmegcs spivvkfadt qkdkeqrrlq
      241 qqlaqqmqql ntatwgnltg lggltpqyla llqqatsssn lgafsgiqqm agmnalqlqn
      301 latlaaaaaa aqtsatttna nplstttgal galtspvaas tanstagaam nsltslgtlq
      361 glagatvgln ninalagmaa lngglgatgl tngtagtmda ltqaysgiqq yaaaalptly
      421 sqsllqqqsa agsqkegpeg anlfiyhlpq efgdqdilqm fmpfgnvisa kvfidkqtnl
      481 skcfgfvsyd npvsaqaaiq amngfqigmk rlkvqlkrsk ndskpy
//
LOCUS       XP_053940260             525 aa            linear   VRT 09-MAR-2023
DEFINITION  CUGBP Elav-like family member 2 isoform X9 [Cuculus canorus].
ACCESSION   XP_053940260
VERSION     XP_053940260.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084285.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..525
                     /product="CUGBP Elav-like family member 2 isoform X9"
                     /calculated_mol_wt=55978
     Region          46..129
                     /region_name="RRM1_CELF1_2_Bruno"
                     /note="RNA recognition motif 1 (RRM1) found in CUGBP
                     Elav-like family member CELF-1, CELF-2, Drosophila
                     melanogaster Bruno protein and similar proteins; cd12631"
                     /db_xref="CDD:410040"
     Site            order(50,52..53,56,77..80,82..83,90..92,94,124,126,
                     128..129)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410040"
     Region          138..218
                     /region_name="RRM2_CELF1_2"
                     /note="RNA recognition motif 2 (RRM2) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12634"
                     /db_xref="CDD:410042"
     Site            order(140,142,144..145,148,167,169,171,179..181,183,
                     209..210,213,215,217..218)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410042"
     Region          433..524
                     /region_name="RRM3_CELF1_2"
                     /note="RNA recognition motif 3 (RRM3) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12638"
                     /db_xref="CDD:241082"
     CDS             1..525
                     /gene="CELF2"
                     /coded_by="XM_054084285.1:102..1679"
                     /db_xref="GeneID:104066327"
ORIGIN      
        1 mtssfkldfl pemmvdgrll vseringtan kmngaldhsd qpdpdaikmf vgqiprswse
       61 kelkelfepy gavyqinvlr drsqnppqsk gccfvtfytr kaaleaqnal hniktlpgmh
      121 hpiqmkpads eksnavedrk lfigmvskkc nendirvmfs pfgqieecri lrgpdglsrg
      181 cafvtfstra maqnaikamh qsqtmegcss pivvkfadtq kdkeqrrlqq qlaqqmqqln
      241 tatwgnltgl ggltpqylal lqqatsssnl gafsgiqqma gmnalqlqnl atlaaaaaaa
      301 qtsatttnan plstttgalg altspvaast anstagaamn sltslgtlqg lagatvglnn
      361 inalagtvni aqmlsgmaal ngglgatglt ngtagtmdal tqaysgiqqy aaaalptlys
      421 qsllqqqsaa gsqkegpega nlfiyhlpqe fgdqdilqmf mpfgnvisak vfidkqtnls
      481 kcfgfvsydn pvsaqaaiqa mngfqigmkr lkvqlkrskn dskpy
//
LOCUS       XP_053940330             521 aa            linear   VRT 09-MAR-2023
DEFINITION  CUGBP Elav-like family member 2 isoform X10 [Cuculus canorus].
ACCESSION   XP_053940330
VERSION     XP_053940330.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084355.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..521
                     /product="CUGBP Elav-like family member 2 isoform X10"
                     /calculated_mol_wt=55593
     Region          46..129
                     /region_name="RRM1_CELF1_2_Bruno"
                     /note="RNA recognition motif 1 (RRM1) found in CUGBP
                     Elav-like family member CELF-1, CELF-2, Drosophila
                     melanogaster Bruno protein and similar proteins; cd12631"
                     /db_xref="CDD:410040"
     Site            order(50,52..53,56,77..80,82..83,90..92,94,124,126,
                     128..129)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410040"
     Region          138..218
                     /region_name="RRM2_CELF1_2"
                     /note="RNA recognition motif 2 (RRM2) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12634"
                     /db_xref="CDD:410042"
     Site            order(140,142,144..145,148,167,169,171,179..181,183,
                     209..210,213,215,217..218)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410042"
     Region          429..520
                     /region_name="RRM3_CELF1_2"
                     /note="RNA recognition motif 3 (RRM3) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12638"
                     /db_xref="CDD:241082"
     CDS             1..521
                     /gene="CELF2"
                     /coded_by="XM_054084355.1:101..1666"
                     /db_xref="GeneID:104066327"
ORIGIN      
        1 mtssfkldfl pemmvdgrll vseringtan kmngaldhsd qpdpdaikmf vgqiprswse
       61 kelkelfepy gavyqinvlr drsqnppqsk gccfvtfytr kaaleaqnal hniktlpgmh
      121 hpiqmkpads eksnavedrk lfigmvskkc nendirvmfs pfgqieecri lrgpdglsrg
      181 cafvtfstra maqnaikamh qsqtmegcss pivvkfadtq kdkeqrrlqq qlaqqmqqln
      241 tatwgnltgl ggltpqylal lqqatsssnl gafsgiqqma gmnalqlqnl atlaaaaaaa
      301 qtsatttnan plstttgalg altspvaast anstagaamn sltslgtlqg lagatvglnn
      361 inalavaqml sgmaalnggl gatgltngta gtmdaltqay sgiqqyaaaa lptlysqsll
      421 qqqsaagsqk egpeganlfi yhlpqefgdq dilqmfmpfg nvisakvfid kqtnlskcfg
      481 fvsydnpvsa qaaiqamngf qigmkrlkvq lkrskndskp y
//
LOCUS       XP_053940413             519 aa            linear   VRT 09-MAR-2023
DEFINITION  CUGBP Elav-like family member 2 isoform X11 [Cuculus canorus].
ACCESSION   XP_053940413
VERSION     XP_053940413.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084438.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..519
                     /product="CUGBP Elav-like family member 2 isoform X11"
                     /calculated_mol_wt=55364
     Region          46..129
                     /region_name="RRM1_CELF1_2_Bruno"
                     /note="RNA recognition motif 1 (RRM1) found in CUGBP
                     Elav-like family member CELF-1, CELF-2, Drosophila
                     melanogaster Bruno protein and similar proteins; cd12631"
                     /db_xref="CDD:410040"
     Site            order(50,52..53,56,77..80,82..83,90..92,94,124,126,
                     128..129)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410040"
     Region          138..218
                     /region_name="RRM2_CELF1_2"
                     /note="RNA recognition motif 2 (RRM2) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12634"
                     /db_xref="CDD:410042"
     Site            order(140,142,144..145,148,167,169,171,179..181,183,
                     209..210,213,215,217..218)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410042"
     Region          427..518
                     /region_name="RRM3_CELF1_2"
                     /note="RNA recognition motif 3 (RRM3) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12638"
                     /db_xref="CDD:241082"
     CDS             1..519
                     /gene="CELF2"
                     /coded_by="XM_054084438.1:101..1660"
                     /db_xref="GeneID:104066327"
ORIGIN      
        1 mtssfkldfl pemmvdgrll vseringtan kmngaldhsd qpdpdaikmf vgqiprswse
       61 kelkelfepy gavyqinvlr drsqnppqsk gccfvtfytr kaaleaqnal hniktlpgmh
      121 hpiqmkpads eksnavedrk lfigmvskkc nendirvmfs pfgqieecri lrgpdglsrg
      181 cafvtfstra maqnaikamh qsqtmegcss pivvkfadtq kdkeqrrlqq qlaqqmqqln
      241 tatwgnltgl ggltpqylal lqqatsssnl gafsgiqqma gmnalqlqnl atlaaaaaaa
      301 qtsatttnan plstttgalg altspvaast anstagaamn sltslgtlqg lagatvglnn
      361 inalagtvns maalngglga tgltngtagt mdaltqaysg iqqyaaaalp tlysqsllqq
      421 qsaagsqkeg peganlfiyh lpqefgdqdi lqmfmpfgnv isakvfidkq tnlskcfgfv
      481 sydnpvsaqa aiqamngfqi gmkrlkvqlk rskndskpy
//
LOCUS       XP_053940489             515 aa            linear   VRT 09-MAR-2023
DEFINITION  CUGBP Elav-like family member 2 isoform X12 [Cuculus canorus].
ACCESSION   XP_053940489
VERSION     XP_053940489.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084514.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..515
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..515
                     /product="CUGBP Elav-like family member 2 isoform X12"
                     /calculated_mol_wt=54963
     Region          46..129
                     /region_name="RRM1_CELF1_2_Bruno"
                     /note="RNA recognition motif 1 (RRM1) found in CUGBP
                     Elav-like family member CELF-1, CELF-2, Drosophila
                     melanogaster Bruno protein and similar proteins; cd12631"
                     /db_xref="CDD:410040"
     Site            order(50,52..53,56,77..80,82..83,90..92,94,124,126,
                     128..129)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410040"
     Region          138..218
                     /region_name="RRM2_CELF1_2"
                     /note="RNA recognition motif 2 (RRM2) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12634"
                     /db_xref="CDD:410042"
     Site            order(140,142,144..145,148,167,169,171,179..181,183,
                     209..210,213,215,217..218)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410042"
     Region          423..514
                     /region_name="RRM3_CELF1_2"
                     /note="RNA recognition motif 3 (RRM3) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12638"
                     /db_xref="CDD:241082"
     CDS             1..515
                     /gene="CELF2"
                     /coded_by="XM_054084514.1:99..1646"
                     /db_xref="GeneID:104066327"
ORIGIN      
        1 mtssfkldfl pemmvdgrll vseringtan kmngaldhsd qpdpdaikmf vgqiprswse
       61 kelkelfepy gavyqinvlr drsqnppqsk gccfvtfytr kaaleaqnal hniktlpgmh
      121 hpiqmkpads eksnavedrk lfigmvskkc nendirvmfs pfgqieecri lrgpdglsrg
      181 cafvtfstra maqnaikamh qsqtmegcss pivvkfadtq kdkeqrrlqq qlaqqmqqln
      241 tatwgnltgl ggltpqylal lqqatsssnl gafsgiqqma gmnalqlqnl atlaaaaaaa
      301 qtsatttnan plstttgalg altspvaast anstagaamn sltslgtlqg lagatvglnn
      361 inalagmaal ngglgatglt ngtagtmdal tqaysgiqqy aaaalptlys qsllqqqsaa
      421 gsqkegpega nlfiyhlpqe fgdqdilqmf mpfgnvisak vfidkqtnls kcfgfvsydn
      481 pvsaqaaiqa mngfqigmkr lkvqlkrskn dskpy
//
LOCUS       XP_053940559             494 aa            linear   VRT 09-MAR-2023
DEFINITION  CUGBP Elav-like family member 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053940559
VERSION     XP_053940559.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084584.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..494
                     /product="CUGBP Elav-like family member 2 isoform X1"
                     /calculated_mol_wt=52495
     Region          15..98
                     /region_name="RRM1_CELF1_2_Bruno"
                     /note="RNA recognition motif 1 (RRM1) found in CUGBP
                     Elav-like family member CELF-1, CELF-2, Drosophila
                     melanogaster Bruno protein and similar proteins; cd12631"
                     /db_xref="CDD:410040"
     Site            order(19,21..22,25,46..49,51..52,59..61,63,93,95,97..98)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410040"
     Region          107..187
                     /region_name="RRM2_CELF1_2"
                     /note="RNA recognition motif 2 (RRM2) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12634"
                     /db_xref="CDD:410042"
     Site            order(109,111,113..114,117,136,138,140,148..150,152,
                     178..179,182,184,186..187)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410042"
     Region          402..493
                     /region_name="RRM3_CELF1_2"
                     /note="RNA recognition motif 3 (RRM3) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12638"
                     /db_xref="CDD:241082"
     CDS             1..494
                     /gene="CELF2"
                     /coded_by="XM_054084584.1:279..1763"
                     /db_xref="GeneID:104066327"
ORIGIN      
        1 mngaldhsdq pdpdaikmfv gqiprswsek elkelfepyg avyqinvlrd rsqnppqskg
       61 ccfvtfytrk aaleaqnalh niktlpgmhh piqmkpadse ksnavedrkl figmvskkcn
      121 endirvmfsp fgqieecril rgpdglsrgc afvtfstram aqnaikamhq sqtmegcssp
      181 ivvkfadtqk dkeqrrlqqq laqqmqqlnt atwgnltglg gltpqylall qqatsssnlg
      241 afsgiqqmag mnalqlqnla tlaaaaaaaq tsatttnanp lstttgalga ltspvaasta
      301 nstagaamns ltslgtlqgl agatvglnni nalagtvnia qmlsgmaaln gglgatgltn
      361 gtagtmdalt qaysgiqqya aaalptlysq sllqqqsaag sqkegpegan lfiyhlpqef
      421 gdqdilqmfm pfgnvisakv fidkqtnlsk cfgfvsydnp vsaqaaiqam ngfqigmkrl
      481 kvqlkrsknd skpy
//
LOCUS       XP_053940632             494 aa            linear   VRT 09-MAR-2023
DEFINITION  CUGBP Elav-like family member 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053940632
VERSION     XP_053940632.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084657.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..494
                     /product="CUGBP Elav-like family member 2 isoform X1"
                     /calculated_mol_wt=52495
     Region          15..98
                     /region_name="RRM1_CELF1_2_Bruno"
                     /note="RNA recognition motif 1 (RRM1) found in CUGBP
                     Elav-like family member CELF-1, CELF-2, Drosophila
                     melanogaster Bruno protein and similar proteins; cd12631"
                     /db_xref="CDD:410040"
     Site            order(19,21..22,25,46..49,51..52,59..61,63,93,95,97..98)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410040"
     Region          107..187
                     /region_name="RRM2_CELF1_2"
                     /note="RNA recognition motif 2 (RRM2) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12634"
                     /db_xref="CDD:410042"
     Site            order(109,111,113..114,117,136,138,140,148..150,152,
                     178..179,182,184,186..187)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410042"
     Region          402..493
                     /region_name="RRM3_CELF1_2"
                     /note="RNA recognition motif 3 (RRM3) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12638"
                     /db_xref="CDD:241082"
     CDS             1..494
                     /gene="CELF2"
                     /coded_by="XM_054084657.1:92..1576"
                     /db_xref="GeneID:104066327"
ORIGIN      
        1 mngaldhsdq pdpdaikmfv gqiprswsek elkelfepyg avyqinvlrd rsqnppqskg
       61 ccfvtfytrk aaleaqnalh niktlpgmhh piqmkpadse ksnavedrkl figmvskkcn
      121 endirvmfsp fgqieecril rgpdglsrgc afvtfstram aqnaikamhq sqtmegcssp
      181 ivvkfadtqk dkeqrrlqqq laqqmqqlnt atwgnltglg gltpqylall qqatsssnlg
      241 afsgiqqmag mnalqlqnla tlaaaaaaaq tsatttnanp lstttgalga ltspvaasta
      301 nstagaamns ltslgtlqgl agatvglnni nalagtvnia qmlsgmaaln gglgatgltn
      361 gtagtmdalt qaysgiqqya aaalptlysq sllqqqsaag sqkegpegan lfiyhlpqef
      421 gdqdilqmfm pfgnvisakv fidkqtnlsk cfgfvsydnp vsaqaaiqam ngfqigmkrl
      481 kvqlkrsknd skpy
//
LOCUS       XP_053940710             494 aa            linear   VRT 09-MAR-2023
DEFINITION  CUGBP Elav-like family member 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053940710
VERSION     XP_053940710.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084735.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..494
                     /product="CUGBP Elav-like family member 2 isoform X1"
                     /calculated_mol_wt=52495
     Region          15..98
                     /region_name="RRM1_CELF1_2_Bruno"
                     /note="RNA recognition motif 1 (RRM1) found in CUGBP
                     Elav-like family member CELF-1, CELF-2, Drosophila
                     melanogaster Bruno protein and similar proteins; cd12631"
                     /db_xref="CDD:410040"
     Site            order(19,21..22,25,46..49,51..52,59..61,63,93,95,97..98)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410040"
     Region          107..187
                     /region_name="RRM2_CELF1_2"
                     /note="RNA recognition motif 2 (RRM2) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12634"
                     /db_xref="CDD:410042"
     Site            order(109,111,113..114,117,136,138,140,148..150,152,
                     178..179,182,184,186..187)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:410042"
     Region          402..493
                     /region_name="RRM3_CELF1_2"
                     /note="RNA recognition motif 3 (RRM3) found in CUGBP
                     Elav-like family member CELF-1, CELF-2 and similar
                     proteins; cd12638"
                     /db_xref="CDD:241082"
     CDS             1..494
                     /gene="CELF2"
                     /coded_by="XM_054084735.1:128..1612"
                     /db_xref="GeneID:104066327"
ORIGIN      
        1 mngaldhsdq pdpdaikmfv gqiprswsek elkelfepyg avyqinvlrd rsqnppqskg
       61 ccfvtfytrk aaleaqnalh niktlpgmhh piqmkpadse ksnavedrkl figmvskkcn
      121 endirvmfsp fgqieecril rgpdglsrgc afvtfstram aqnaikamhq sqtmegcssp
      181 ivvkfadtqk dkeqrrlqqq laqqmqqlnt atwgnltglg gltpqylall qqatsssnlg
      241 afsgiqqmag mnalqlqnla tlaaaaaaaq tsatttnanp lstttgalga ltspvaasta
      301 nstagaamns ltslgtlqgl agatvglnni nalagtvnia qmlsgmaaln gglgatgltn
      361 gtagtmdalt qaysgiqqya aaalptlysq sllqqqsaag sqkegpegan lfiyhlpqef
      421 gdqdilqmfm pfgnvisakv fidkqtnlsk cfgfvsydnp vsaqaaiqam ngfqigmkrl
      481 kvqlkrsknd skpy
//
LOCUS       XP_053940827             479 aa            linear   VRT 09-MAR-2023
DEFINITION  U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
            subunit-related protein 2 [Cuculus canorus].
ACCESSION   XP_053940827
VERSION     XP_053940827.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084852.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..479
                     /product="U2 small nuclear ribonucleoprotein auxiliary
                     factor 35 kDa subunit-related protein 2"
                     /calculated_mol_wt=57322
     Region          174..198
                     /region_name="zf-CCCH"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     pfam00642"
                     /db_xref="CDD:459885"
     Region          206..310
                     /region_name="RRM_U2AFBPL"
                     /note="RNA recognition motif (RRM) found in U2 small
                     nuclear ribonucleoprotein auxiliary factor 35 kDa
                     subunit-related protein 1 (U2AFBPL) and similar proteins;
                     cd12540"
                     /db_xref="CDD:409956"
     Region          313..338
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     CDS             1..479
                     /gene="ZRSR2"
                     /coded_by="XM_054084852.1:28..1467"
                     /db_xref="GeneID:104063397"
ORIGIN      
        1 maapmllpes plgklshqky railkkekrk kkrqalaklr dseatekdes vseeeeeele
       61 eeeedeeeek kleaerqklh eqwllreeka qeefklkkek eeaarkrqee eerkikeewe
      121 erqrkereaa qqkqqekrer eaavqrmldq aesqlengvt whnpeppeni gtekdrancp
      181 fyiktgscrf gdrcsrkhny ptssktllvr gmfitfgmeq crrddydtda sleysdeety
      241 qqflefyedv lpefqnvgkv vqfkvscnye phlrgnvyvq yqsekdcqaa lalfsgrwya
      301 grqlhcefcp vtrwktaicg lferqkcprg khcnflhvfk npnnefwean rdirispert
      361 nqlsknserr nrsshrddyy srsrrrgsps pdhsyrrnge serkknrrkn krrrrsgrsr
      421 srerrrshsr grkrrgrsrs rsysrtrsrs rsrsssrsrs rgkkrsssrg knsetpktk
//
LOCUS       XP_053940946             157 aa            linear   VRT 09-MAR-2023
DEFINITION  AP-1 complex subunit sigma-2 [Cuculus canorus].
ACCESSION   XP_053940946
VERSION     XP_053940946.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084971.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..157
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..157
                     /product="AP-1 complex subunit sigma-2"
                     /calculated_mol_wt=18484
     Region          2..144
                     /region_name="AP1_sigma"
                     /note="AP-1 complex subunit sigma; cd14831"
                     /db_xref="CDD:341435"
     Site            order(8..9,14,61..64,87..88,91,96..100)
                     /site_type="other"
                     /note="dileucine motif interface [polypeptide binding]"
                     /db_xref="CDD:341435"
     Site            order(13..16,18..19,44..48,74..78,80..82,85,96,103..106,
                     110..111,114..115,118..125,127..129,136..138,140..141,144)
                     /site_type="other"
                     /note="AP-1 gamma interface [polypeptide binding]"
                     /db_xref="CDD:341435"
     Site            order(25,29,33,36,50..53)
                     /site_type="other"
                     /note="AP-1 mu interface [polypeptide binding]"
                     /db_xref="CDD:341435"
     CDS             1..157
                     /gene="AP1S2"
                     /coded_by="XM_054084971.1:210..683"
                     /db_xref="GeneID:104063396"
ORIGIN      
        1 mqfmllfsrq gklrlqkwyv plsdkekkki trelvqtvla rkpkmcsfle wrdlkivykr
       61 yaslyfccai edqdnelitl eiihryvell dkyfgsvcel diifnfekay fildefllgg
      121 evqetskknv lkaieqadll qeeaetprsv leeiglt
//
LOCUS       XP_053941211             880 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin-protein ligase E3A isoform X1 [Cuculus canorus].
ACCESSION   XP_053941211
VERSION     XP_053941211.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085236.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..880
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..880
                     /product="ubiquitin-protein ligase E3A isoform X1"
                     /calculated_mol_wt=100748
     Region          27..81
                     /region_name="AZUL"
                     /note="Amino-terminal Zinc-binding domain of ubiquitin
                     ligase E3A; pfam16558"
                     /db_xref="CDD:465173"
     Region          528..878
                     /region_name="HECTc"
                     /note="HECT domain; C-terminal catalytic domain of a
                     subclass of Ubiquitin-protein ligase (E3). It binds
                     specific ubiquitin-conjugating enzymes (E2), accepts
                     ubiquitin from E2, transfers ubiquitin to substrate lysine
                     side chains, and transfers additional...; cd00078"
                     /db_xref="CDD:238033"
     Site            order(534,567,578,635,813,842..843,846..850,870,877)
                     /site_type="active"
                     /note="catalytic cleft [active]"
                     /db_xref="CDD:238033"
     Site            order(663,666..667,669..670,673,681,683,687..688,690,696,
                     701,718,722)
                     /site_type="active"
                     /note="E2 interaction site [active]"
                     /db_xref="CDD:238033"
     CDS             1..880
                     /gene="UBE3A"
                     /coded_by="XM_054085236.1:821..3463"
                     /db_xref="GeneID:104056660"
ORIGIN      
        1 matackrspg ephsenieas rmkraaakhl ieryyhqlte gcgneactne fcascptflr
       61 mdnnaaaika lelykinakl cdphpskkgt ssaylennsk gahnnsctdr kmnkkemqgp
      121 rddfkdvtfl tedkiyeile lcrekedysp lirvigrvfs saealvqsfr kakqhtkeel
      181 kslqgkdedk dedekekaac saaameedsg assssssrig dntqgdnnlq klgpdevsvd
      241 ieavrrvydr llsnekieta flnalvylsp nvecdltyhn vysrdpnyln lfiivmengn
      301 lhspeylema lplfckamsk lplaaqaklv rlwskyradq irrmmetfqq litykvisne
      361 fnsrnlvndd davvaaskcl kmvyyanvvg gdvdtdhnee edeepipess eltlqellge
      421 errnkkgprv dpletelgvk tidcrkplip feefinepln dvlemdkdyt ffkvetenkf
      481 sfmtcpfiln avtknlglyy dnrirmyser ritvlyslvq gqqlnpylrl kvrrdhiidd
      541 alvrlemiam enpadlkkql yvefegeqgv deggvskeff qlvveeifnp digmftydes
      601 tklfwfnpss fetegqftli givlglaiyn ncildvhfpm vvyrklmgkk gtfrdladsh
      661 pvlyqslsnl leyegsvedd mmitfqisht dlfgnpmmhd lkengdkipi tnenrkefvn
      721 lyadyilnks vekqfkafrr gfhmvtnesp lkylfrpeei ellicgsrnl dfqaleette
      781 ydggytrdsl iirefweivh sftdeqkrlf lqfttgtdra pvgglgklkm iiakngpdte
      841 rlptshtcfn vlllpeyssk eklkerllka ityakgfgml
//
LOCUS       XP_053941284             880 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin-protein ligase E3A isoform X1 [Cuculus canorus].
ACCESSION   XP_053941284
VERSION     XP_053941284.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085309.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..880
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..880
                     /product="ubiquitin-protein ligase E3A isoform X1"
                     /calculated_mol_wt=100748
     Region          27..81
                     /region_name="AZUL"
                     /note="Amino-terminal Zinc-binding domain of ubiquitin
                     ligase E3A; pfam16558"
                     /db_xref="CDD:465173"
     Region          528..878
                     /region_name="HECTc"
                     /note="HECT domain; C-terminal catalytic domain of a
                     subclass of Ubiquitin-protein ligase (E3). It binds
                     specific ubiquitin-conjugating enzymes (E2), accepts
                     ubiquitin from E2, transfers ubiquitin to substrate lysine
                     side chains, and transfers additional...; cd00078"
                     /db_xref="CDD:238033"
     Site            order(534,567,578,635,813,842..843,846..850,870,877)
                     /site_type="active"
                     /note="catalytic cleft [active]"
                     /db_xref="CDD:238033"
     Site            order(663,666..667,669..670,673,681,683,687..688,690,696,
                     701,718,722)
                     /site_type="active"
                     /note="E2 interaction site [active]"
                     /db_xref="CDD:238033"
     CDS             1..880
                     /gene="UBE3A"
                     /coded_by="XM_054085309.1:703..3345"
                     /db_xref="GeneID:104056660"
ORIGIN      
        1 matackrspg ephsenieas rmkraaakhl ieryyhqlte gcgneactne fcascptflr
       61 mdnnaaaika lelykinakl cdphpskkgt ssaylennsk gahnnsctdr kmnkkemqgp
      121 rddfkdvtfl tedkiyeile lcrekedysp lirvigrvfs saealvqsfr kakqhtkeel
      181 kslqgkdedk dedekekaac saaameedsg assssssrig dntqgdnnlq klgpdevsvd
      241 ieavrrvydr llsnekieta flnalvylsp nvecdltyhn vysrdpnyln lfiivmengn
      301 lhspeylema lplfckamsk lplaaqaklv rlwskyradq irrmmetfqq litykvisne
      361 fnsrnlvndd davvaaskcl kmvyyanvvg gdvdtdhnee edeepipess eltlqellge
      421 errnkkgprv dpletelgvk tidcrkplip feefinepln dvlemdkdyt ffkvetenkf
      481 sfmtcpfiln avtknlglyy dnrirmyser ritvlyslvq gqqlnpylrl kvrrdhiidd
      541 alvrlemiam enpadlkkql yvefegeqgv deggvskeff qlvveeifnp digmftydes
      601 tklfwfnpss fetegqftli givlglaiyn ncildvhfpm vvyrklmgkk gtfrdladsh
      661 pvlyqslsnl leyegsvedd mmitfqisht dlfgnpmmhd lkengdkipi tnenrkefvn
      721 lyadyilnks vekqfkafrr gfhmvtnesp lkylfrpeei ellicgsrnl dfqaleette
      781 ydggytrdsl iirefweivh sftdeqkrlf lqfttgtdra pvgglgklkm iiakngpdte
      841 rlptshtcfn vlllpeyssk eklkerllka ityakgfgml
//
LOCUS       XP_053941361             880 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin-protein ligase E3A isoform X1 [Cuculus canorus].
ACCESSION   XP_053941361
VERSION     XP_053941361.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085386.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..880
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..880
                     /product="ubiquitin-protein ligase E3A isoform X1"
                     /calculated_mol_wt=100748
     Region          27..81
                     /region_name="AZUL"
                     /note="Amino-terminal Zinc-binding domain of ubiquitin
                     ligase E3A; pfam16558"
                     /db_xref="CDD:465173"
     Region          528..878
                     /region_name="HECTc"
                     /note="HECT domain; C-terminal catalytic domain of a
                     subclass of Ubiquitin-protein ligase (E3). It binds
                     specific ubiquitin-conjugating enzymes (E2), accepts
                     ubiquitin from E2, transfers ubiquitin to substrate lysine
                     side chains, and transfers additional...; cd00078"
                     /db_xref="CDD:238033"
     Site            order(534,567,578,635,813,842..843,846..850,870,877)
                     /site_type="active"
                     /note="catalytic cleft [active]"
                     /db_xref="CDD:238033"
     Site            order(663,666..667,669..670,673,681,683,687..688,690,696,
                     701,718,722)
                     /site_type="active"
                     /note="E2 interaction site [active]"
                     /db_xref="CDD:238033"
     CDS             1..880
                     /gene="UBE3A"
                     /coded_by="XM_054085386.1:613..3255"
                     /db_xref="GeneID:104056660"
ORIGIN      
        1 matackrspg ephsenieas rmkraaakhl ieryyhqlte gcgneactne fcascptflr
       61 mdnnaaaika lelykinakl cdphpskkgt ssaylennsk gahnnsctdr kmnkkemqgp
      121 rddfkdvtfl tedkiyeile lcrekedysp lirvigrvfs saealvqsfr kakqhtkeel
      181 kslqgkdedk dedekekaac saaameedsg assssssrig dntqgdnnlq klgpdevsvd
      241 ieavrrvydr llsnekieta flnalvylsp nvecdltyhn vysrdpnyln lfiivmengn
      301 lhspeylema lplfckamsk lplaaqaklv rlwskyradq irrmmetfqq litykvisne
      361 fnsrnlvndd davvaaskcl kmvyyanvvg gdvdtdhnee edeepipess eltlqellge
      421 errnkkgprv dpletelgvk tidcrkplip feefinepln dvlemdkdyt ffkvetenkf
      481 sfmtcpfiln avtknlglyy dnrirmyser ritvlyslvq gqqlnpylrl kvrrdhiidd
      541 alvrlemiam enpadlkkql yvefegeqgv deggvskeff qlvveeifnp digmftydes
      601 tklfwfnpss fetegqftli givlglaiyn ncildvhfpm vvyrklmgkk gtfrdladsh
      661 pvlyqslsnl leyegsvedd mmitfqisht dlfgnpmmhd lkengdkipi tnenrkefvn
      721 lyadyilnks vekqfkafrr gfhmvtnesp lkylfrpeei ellicgsrnl dfqaleette
      781 ydggytrdsl iirefweivh sftdeqkrlf lqfttgtdra pvgglgklkm iiakngpdte
      841 rlptshtcfn vlllpeyssk eklkerllka ityakgfgml
//
LOCUS       XP_053941424             880 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin-protein ligase E3A isoform X1 [Cuculus canorus].
ACCESSION   XP_053941424
VERSION     XP_053941424.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085449.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..880
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..880
                     /product="ubiquitin-protein ligase E3A isoform X1"
                     /calculated_mol_wt=100748
     Region          27..81
                     /region_name="AZUL"
                     /note="Amino-terminal Zinc-binding domain of ubiquitin
                     ligase E3A; pfam16558"
                     /db_xref="CDD:465173"
     Region          528..878
                     /region_name="HECTc"
                     /note="HECT domain; C-terminal catalytic domain of a
                     subclass of Ubiquitin-protein ligase (E3). It binds
                     specific ubiquitin-conjugating enzymes (E2), accepts
                     ubiquitin from E2, transfers ubiquitin to substrate lysine
                     side chains, and transfers additional...; cd00078"
                     /db_xref="CDD:238033"
     Site            order(534,567,578,635,813,842..843,846..850,870,877)
                     /site_type="active"
                     /note="catalytic cleft [active]"
                     /db_xref="CDD:238033"
     Site            order(663,666..667,669..670,673,681,683,687..688,690,696,
                     701,718,722)
                     /site_type="active"
                     /note="E2 interaction site [active]"
                     /db_xref="CDD:238033"
     CDS             1..880
                     /gene="UBE3A"
                     /coded_by="XM_054085449.1:675..3317"
                     /db_xref="GeneID:104056660"
ORIGIN      
        1 matackrspg ephsenieas rmkraaakhl ieryyhqlte gcgneactne fcascptflr
       61 mdnnaaaika lelykinakl cdphpskkgt ssaylennsk gahnnsctdr kmnkkemqgp
      121 rddfkdvtfl tedkiyeile lcrekedysp lirvigrvfs saealvqsfr kakqhtkeel
      181 kslqgkdedk dedekekaac saaameedsg assssssrig dntqgdnnlq klgpdevsvd
      241 ieavrrvydr llsnekieta flnalvylsp nvecdltyhn vysrdpnyln lfiivmengn
      301 lhspeylema lplfckamsk lplaaqaklv rlwskyradq irrmmetfqq litykvisne
      361 fnsrnlvndd davvaaskcl kmvyyanvvg gdvdtdhnee edeepipess eltlqellge
      421 errnkkgprv dpletelgvk tidcrkplip feefinepln dvlemdkdyt ffkvetenkf
      481 sfmtcpfiln avtknlglyy dnrirmyser ritvlyslvq gqqlnpylrl kvrrdhiidd
      541 alvrlemiam enpadlkkql yvefegeqgv deggvskeff qlvveeifnp digmftydes
      601 tklfwfnpss fetegqftli givlglaiyn ncildvhfpm vvyrklmgkk gtfrdladsh
      661 pvlyqslsnl leyegsvedd mmitfqisht dlfgnpmmhd lkengdkipi tnenrkefvn
      721 lyadyilnks vekqfkafrr gfhmvtnesp lkylfrpeei ellicgsrnl dfqaleette
      781 ydggytrdsl iirefweivh sftdeqkrlf lqfttgtdra pvgglgklkm iiakngpdte
      841 rlptshtcfn vlllpeyssk eklkerllka ityakgfgml
//
LOCUS       XP_053941505             880 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin-protein ligase E3A isoform X1 [Cuculus canorus].
ACCESSION   XP_053941505
VERSION     XP_053941505.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085530.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..880
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..880
                     /product="ubiquitin-protein ligase E3A isoform X1"
                     /calculated_mol_wt=100748
     Region          27..81
                     /region_name="AZUL"
                     /note="Amino-terminal Zinc-binding domain of ubiquitin
                     ligase E3A; pfam16558"
                     /db_xref="CDD:465173"
     Region          528..878
                     /region_name="HECTc"
                     /note="HECT domain; C-terminal catalytic domain of a
                     subclass of Ubiquitin-protein ligase (E3). It binds
                     specific ubiquitin-conjugating enzymes (E2), accepts
                     ubiquitin from E2, transfers ubiquitin to substrate lysine
                     side chains, and transfers additional...; cd00078"
                     /db_xref="CDD:238033"
     Site            order(534,567,578,635,813,842..843,846..850,870,877)
                     /site_type="active"
                     /note="catalytic cleft [active]"
                     /db_xref="CDD:238033"
     Site            order(663,666..667,669..670,673,681,683,687..688,690,696,
                     701,718,722)
                     /site_type="active"
                     /note="E2 interaction site [active]"
                     /db_xref="CDD:238033"
     CDS             1..880
                     /gene="UBE3A"
                     /coded_by="XM_054085530.1:467..3109"
                     /db_xref="GeneID:104056660"
ORIGIN      
        1 matackrspg ephsenieas rmkraaakhl ieryyhqlte gcgneactne fcascptflr
       61 mdnnaaaika lelykinakl cdphpskkgt ssaylennsk gahnnsctdr kmnkkemqgp
      121 rddfkdvtfl tedkiyeile lcrekedysp lirvigrvfs saealvqsfr kakqhtkeel
      181 kslqgkdedk dedekekaac saaameedsg assssssrig dntqgdnnlq klgpdevsvd
      241 ieavrrvydr llsnekieta flnalvylsp nvecdltyhn vysrdpnyln lfiivmengn
      301 lhspeylema lplfckamsk lplaaqaklv rlwskyradq irrmmetfqq litykvisne
      361 fnsrnlvndd davvaaskcl kmvyyanvvg gdvdtdhnee edeepipess eltlqellge
      421 errnkkgprv dpletelgvk tidcrkplip feefinepln dvlemdkdyt ffkvetenkf
      481 sfmtcpfiln avtknlglyy dnrirmyser ritvlyslvq gqqlnpylrl kvrrdhiidd
      541 alvrlemiam enpadlkkql yvefegeqgv deggvskeff qlvveeifnp digmftydes
      601 tklfwfnpss fetegqftli givlglaiyn ncildvhfpm vvyrklmgkk gtfrdladsh
      661 pvlyqslsnl leyegsvedd mmitfqisht dlfgnpmmhd lkengdkipi tnenrkefvn
      721 lyadyilnks vekqfkafrr gfhmvtnesp lkylfrpeei ellicgsrnl dfqaleette
      781 ydggytrdsl iirefweivh sftdeqkrlf lqfttgtdra pvgglgklkm iiakngpdte
      841 rlptshtcfn vlllpeyssk eklkerllka ityakgfgml
//
LOCUS       XP_053941580             859 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin-protein ligase E3A isoform X2 [Cuculus canorus].
ACCESSION   XP_053941580
VERSION     XP_053941580.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085605.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..859
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..859
                     /product="ubiquitin-protein ligase E3A isoform X2"
                     /calculated_mol_wt=98495
     Region          6..60
                     /region_name="AZUL"
                     /note="Amino-terminal Zinc-binding domain of ubiquitin
                     ligase E3A; pfam16558"
                     /db_xref="CDD:465173"
     Region          507..857
                     /region_name="HECTc"
                     /note="HECT domain; C-terminal catalytic domain of a
                     subclass of Ubiquitin-protein ligase (E3). It binds
                     specific ubiquitin-conjugating enzymes (E2), accepts
                     ubiquitin from E2, transfers ubiquitin to substrate lysine
                     side chains, and transfers additional...; cd00078"
                     /db_xref="CDD:238033"
     Site            order(513,546,557,614,792,821..822,825..829,849,856)
                     /site_type="active"
                     /note="catalytic cleft [active]"
                     /db_xref="CDD:238033"
     Site            order(642,645..646,648..649,652,660,662,666..667,669,675,
                     680,697,701)
                     /site_type="active"
                     /note="E2 interaction site [active]"
                     /db_xref="CDD:238033"
     CDS             1..859
                     /gene="UBE3A"
                     /coded_by="XM_054085605.1:819..3398"
                     /db_xref="GeneID:104056660"
ORIGIN      
        1 mkraaakhli eryyhqlteg cgneactnef cascptflrm dnnaaaikal elykinaklc
       61 dphpskkgts saylennskg ahnnsctdrk mnkkemqgpr ddfkdvtflt edkiyeilel
      121 crekedyspl irvigrvfss aealvqsfrk akqhtkeelk slqgkdedkd edekekaacs
      181 aaameedsga ssssssrigd ntqgdnnlqk lgpdevsvdi eavrrvydrl lsnekietaf
      241 lnalvylspn vecdltyhnv ysrdpnylnl fiivmengnl hspeylemal plfckamskl
      301 plaaqaklvr lwskyradqi rrmmetfqql itykvisnef nsrnlvnddd avvaaskclk
      361 mvyyanvvgg dvdtdhneee deepipesse ltlqellgee rrnkkgprvd pletelgvkt
      421 idcrkplipf eefineplnd vlemdkdytf fkvetenkfs fmtcpfilna vtknlglyyd
      481 nrirmyserr itvlyslvqg qqlnpylrlk vrrdhiidda lvrlemiame npadlkkqly
      541 vefegeqgvd eggvskeffq lvveeifnpd igmftydest klfwfnpssf etegqftlig
      601 ivlglaiynn cildvhfpmv vyrklmgkkg tfrdladshp vlyqslsnll eyegsveddm
      661 mitfqishtd lfgnpmmhdl kengdkipit nenrkefvnl yadyilnksv ekqfkafrrg
      721 fhmvtnespl kylfrpeeie llicgsrnld fqaleettey dggytrdsli irefweivhs
      781 ftdeqkrlfl qfttgtdrap vgglgklkmi iakngpdter lptshtcfnv lllpeysske
      841 klkerllkai tyakgfgml
//
LOCUS       XP_053941669             820 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin-protein ligase E3A isoform X3 [Cuculus canorus].
ACCESSION   XP_053941669
VERSION     XP_053941669.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085694.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..820
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..820
                     /product="ubiquitin-protein ligase E3A isoform X3"
                     /calculated_mol_wt=94048
     Region          468..818
                     /region_name="HECTc"
                     /note="HECT domain; C-terminal catalytic domain of a
                     subclass of Ubiquitin-protein ligase (E3). It binds
                     specific ubiquitin-conjugating enzymes (E2), accepts
                     ubiquitin from E2, transfers ubiquitin to substrate lysine
                     side chains, and transfers additional...; cd00078"
                     /db_xref="CDD:238033"
     Site            order(474,507,518,575,753,782..783,786..790,810,817)
                     /site_type="active"
                     /note="catalytic cleft [active]"
                     /db_xref="CDD:238033"
     Site            order(603,606..607,609..610,613,621,623,627..628,630,636,
                     641,658,662)
                     /site_type="active"
                     /note="E2 interaction site [active]"
                     /db_xref="CDD:238033"
     CDS             1..820
                     /gene="UBE3A"
                     /coded_by="XM_054085694.1:268..2730"
                     /db_xref="GeneID:104056660"
ORIGIN      
        1 mdnnaaaika lelykinakl cdphpskkgt ssaylennsk gahnnsctdr kmnkkemqgp
       61 rddfkdvtfl tedkiyeile lcrekedysp lirvigrvfs saealvqsfr kakqhtkeel
      121 kslqgkdedk dedekekaac saaameedsg assssssrig dntqgdnnlq klgpdevsvd
      181 ieavrrvydr llsnekieta flnalvylsp nvecdltyhn vysrdpnyln lfiivmengn
      241 lhspeylema lplfckamsk lplaaqaklv rlwskyradq irrmmetfqq litykvisne
      301 fnsrnlvndd davvaaskcl kmvyyanvvg gdvdtdhnee edeepipess eltlqellge
      361 errnkkgprv dpletelgvk tidcrkplip feefinepln dvlemdkdyt ffkvetenkf
      421 sfmtcpfiln avtknlglyy dnrirmyser ritvlyslvq gqqlnpylrl kvrrdhiidd
      481 alvrlemiam enpadlkkql yvefegeqgv deggvskeff qlvveeifnp digmftydes
      541 tklfwfnpss fetegqftli givlglaiyn ncildvhfpm vvyrklmgkk gtfrdladsh
      601 pvlyqslsnl leyegsvedd mmitfqisht dlfgnpmmhd lkengdkipi tnenrkefvn
      661 lyadyilnks vekqfkafrr gfhmvtnesp lkylfrpeei ellicgsrnl dfqaleette
      721 ydggytrdsl iirefweivh sftdeqkrlf lqfttgtdra pvgglgklkm iiakngpdte
      781 rlptshtcfn vlllpeyssk eklkerllka ityakgfgml
//
LOCUS       XP_053941791             735 aa            linear   VRT 09-MAR-2023
DEFINITION  cyclic nucleotide-gated cation channel alpha-3 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053941791
VERSION     XP_053941791.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085816.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..735
                     /product="cyclic nucleotide-gated cation channel alpha-3
                     isoform X1"
                     /calculated_mol_wt=84909
     Region          210..452
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          524..640
                     /region_name="CAP_ED"
                     /note="effector domain of the CAP family of transcription
                     factors; members include CAP (or cAMP receptor protein
                     (CRP)), which binds cAMP, FNR (fumarate and nitrate
                     reduction), which uses an iron-sulfur cluster to sense
                     oxygen) and CooA, a heme containing CO...; cd00038"
                     /db_xref="CDD:237999"
     Site            order(590..591,606..608)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:237999"
     Site            order(628..630,634..636)
                     /site_type="other"
                     /note="flexible hinge region"
                     /db_xref="CDD:237999"
     Region          640..708
                     /region_name="CLZ"
                     /note="C-terminal leucine zipper domain of cyclic
                     nucleotide-gated channels; pfam16526"
                     /db_xref="CDD:465160"
     CDS             1..735
                     /gene="CNGA3"
                     /coded_by="XM_054085816.1:296..2503"
                     /db_xref="GeneID:104056659"
ORIGIN      
        1 makintqhsy pgmhslsvrt tdedierign gyirthslce dasselqrvi svdgrhlses
       61 qtssftgrga marlsrfvis vrswatrhsh hedqrpdsfl erirgpelie vssrqsnirs
      121 flgireqpgg iksrwplarf nvnysnntne dkkeekkevk eekkeekkee kkeekkeekk
      181 ddkkddkkdd kkkeekkkei yvidpssniy ynwltiiaap vfynwcmlvc racfdelqvd
      241 hiklwlfldy gsdiiyvfdm fvrfrtgfle qgllvhdekk lrdhytktvq fkldvlslvp
      301 tdlaylklgl nypelrfnrl lrisrlfeff drtetrtnyp nmfrignlvl yiliiihwna
      361 ciyfaiskli gfgtdswvyp nvsipeygrl srkyiyslyw stltlttige tpppvkdeey
      421 lfvvidflvg vlifativgn vgsmisnmna sraefqakvd sikqymhfrk vtkdlearvi
      481 kwfdylwtnk ktvdekevlk nlpdklkaei ainvhldtlk kvrifqdcea gllielvlkl
      541 kptvfspgdy ickkgdigre myiikegkla vvaddgitqf vvlsdgsyfg eisilnikgs
      601 ksgnrrtani rsigysdlfc lskddlmeal teypeakkal eekgrqilmk dnlideeaak
      661 agadpkdlee kverletald tlqtrfarll aeytasqqkv kqrlakvetr vkkygsgtls
      721 vgeaeaekte eekkn
//
LOCUS       XP_053941856             735 aa            linear   VRT 09-MAR-2023
DEFINITION  cyclic nucleotide-gated cation channel alpha-3 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053941856
VERSION     XP_053941856.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085881.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..735
                     /product="cyclic nucleotide-gated cation channel alpha-3
                     isoform X1"
                     /calculated_mol_wt=84909
     Region          210..452
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          524..640
                     /region_name="CAP_ED"
                     /note="effector domain of the CAP family of transcription
                     factors; members include CAP (or cAMP receptor protein
                     (CRP)), which binds cAMP, FNR (fumarate and nitrate
                     reduction), which uses an iron-sulfur cluster to sense
                     oxygen) and CooA, a heme containing CO...; cd00038"
                     /db_xref="CDD:237999"
     Site            order(590..591,606..608)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:237999"
     Site            order(628..630,634..636)
                     /site_type="other"
                     /note="flexible hinge region"
                     /db_xref="CDD:237999"
     Region          640..708
                     /region_name="CLZ"
                     /note="C-terminal leucine zipper domain of cyclic
                     nucleotide-gated channels; pfam16526"
                     /db_xref="CDD:465160"
     CDS             1..735
                     /gene="CNGA3"
                     /coded_by="XM_054085881.1:293..2500"
                     /db_xref="GeneID:104056659"
ORIGIN      
        1 makintqhsy pgmhslsvrt tdedierign gyirthslce dasselqrvi svdgrhlses
       61 qtssftgrga marlsrfvis vrswatrhsh hedqrpdsfl erirgpelie vssrqsnirs
      121 flgireqpgg iksrwplarf nvnysnntne dkkeekkevk eekkeekkee kkeekkeekk
      181 ddkkddkkdd kkkeekkkei yvidpssniy ynwltiiaap vfynwcmlvc racfdelqvd
      241 hiklwlfldy gsdiiyvfdm fvrfrtgfle qgllvhdekk lrdhytktvq fkldvlslvp
      301 tdlaylklgl nypelrfnrl lrisrlfeff drtetrtnyp nmfrignlvl yiliiihwna
      361 ciyfaiskli gfgtdswvyp nvsipeygrl srkyiyslyw stltlttige tpppvkdeey
      421 lfvvidflvg vlifativgn vgsmisnmna sraefqakvd sikqymhfrk vtkdlearvi
      481 kwfdylwtnk ktvdekevlk nlpdklkaei ainvhldtlk kvrifqdcea gllielvlkl
      541 kptvfspgdy ickkgdigre myiikegkla vvaddgitqf vvlsdgsyfg eisilnikgs
      601 ksgnrrtani rsigysdlfc lskddlmeal teypeakkal eekgrqilmk dnlideeaak
      661 agadpkdlee kverletald tlqtrfarll aeytasqqkv kqrlakvetr vkkygsgtls
      721 vgeaeaekte eekkn
//
LOCUS       XP_053941926             735 aa            linear   VRT 09-MAR-2023
DEFINITION  cyclic nucleotide-gated cation channel alpha-3 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053941926
VERSION     XP_053941926.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085951.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..735
                     /product="cyclic nucleotide-gated cation channel alpha-3
                     isoform X1"
                     /calculated_mol_wt=84909
     Region          210..452
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          524..640
                     /region_name="CAP_ED"
                     /note="effector domain of the CAP family of transcription
                     factors; members include CAP (or cAMP receptor protein
                     (CRP)), which binds cAMP, FNR (fumarate and nitrate
                     reduction), which uses an iron-sulfur cluster to sense
                     oxygen) and CooA, a heme containing CO...; cd00038"
                     /db_xref="CDD:237999"
     Site            order(590..591,606..608)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:237999"
     Site            order(628..630,634..636)
                     /site_type="other"
                     /note="flexible hinge region"
                     /db_xref="CDD:237999"
     Region          640..708
                     /region_name="CLZ"
                     /note="C-terminal leucine zipper domain of cyclic
                     nucleotide-gated channels; pfam16526"
                     /db_xref="CDD:465160"
     CDS             1..735
                     /gene="CNGA3"
                     /coded_by="XM_054085951.1:275..2482"
                     /db_xref="GeneID:104056659"
ORIGIN      
        1 makintqhsy pgmhslsvrt tdedierign gyirthslce dasselqrvi svdgrhlses
       61 qtssftgrga marlsrfvis vrswatrhsh hedqrpdsfl erirgpelie vssrqsnirs
      121 flgireqpgg iksrwplarf nvnysnntne dkkeekkevk eekkeekkee kkeekkeekk
      181 ddkkddkkdd kkkeekkkei yvidpssniy ynwltiiaap vfynwcmlvc racfdelqvd
      241 hiklwlfldy gsdiiyvfdm fvrfrtgfle qgllvhdekk lrdhytktvq fkldvlslvp
      301 tdlaylklgl nypelrfnrl lrisrlfeff drtetrtnyp nmfrignlvl yiliiihwna
      361 ciyfaiskli gfgtdswvyp nvsipeygrl srkyiyslyw stltlttige tpppvkdeey
      421 lfvvidflvg vlifativgn vgsmisnmna sraefqakvd sikqymhfrk vtkdlearvi
      481 kwfdylwtnk ktvdekevlk nlpdklkaei ainvhldtlk kvrifqdcea gllielvlkl
      541 kptvfspgdy ickkgdigre myiikegkla vvaddgitqf vvlsdgsyfg eisilnikgs
      601 ksgnrrtani rsigysdlfc lskddlmeal teypeakkal eekgrqilmk dnlideeaak
      661 agadpkdlee kverletald tlqtrfarll aeytasqqkv kqrlakvetr vkkygsgtls
      721 vgeaeaekte eekkn
//
LOCUS       XP_053942006             717 aa            linear   VRT 09-MAR-2023
DEFINITION  cyclic nucleotide-gated cation channel alpha-3 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053942006
VERSION     XP_053942006.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086031.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..717
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..717
                     /product="cyclic nucleotide-gated cation channel alpha-3
                     isoform X2"
                     /calculated_mol_wt=82716
     Region          192..434
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          506..622
                     /region_name="CAP_ED"
                     /note="effector domain of the CAP family of transcription
                     factors; members include CAP (or cAMP receptor protein
                     (CRP)), which binds cAMP, FNR (fumarate and nitrate
                     reduction), which uses an iron-sulfur cluster to sense
                     oxygen) and CooA, a heme containing CO...; cd00038"
                     /db_xref="CDD:237999"
     Site            order(572..573,588..590)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:237999"
     Site            order(610..612,616..618)
                     /site_type="other"
                     /note="flexible hinge region"
                     /db_xref="CDD:237999"
     Region          622..690
                     /region_name="CLZ"
                     /note="C-terminal leucine zipper domain of cyclic
                     nucleotide-gated channels; pfam16526"
                     /db_xref="CDD:465160"
     CDS             1..717
                     /gene="CNGA3"
                     /coded_by="XM_054086031.1:296..2449"
                     /db_xref="GeneID:104056659"
ORIGIN      
        1 makintqhsy pgmhslsvrt tdedierign gyirthslce dasselqrvi svdgrhlses
       61 qtssftgrga marlsrfvis vrswatrhsh hedqrpdsfl erirgpelie vssrqsnirs
      121 flgireqpgg ikskkeekke vkeekkeekk eekkeekkee kkddkkddkk ddkkkeekkk
      181 eiyvidpssn iyynwltiia apvfynwcml vcracfdelq vdhiklwlfl dygsdiiyvf
      241 dmfvrfrtgf leqgllvhde kklrdhytkt vqfkldvlsl vptdlaylkl glnypelrfn
      301 rllrisrlfe ffdrtetrtn ypnmfrignl vlyiliiihw naciyfaisk ligfgtdswv
      361 ypnvsipeyg rlsrkyiysl ywstltltti getpppvkde eylfvvidfl vgvlifativ
      421 gnvgsmisnm nasraefqak vdsikqymhf rkvtkdlear vikwfdylwt nkktvdekev
      481 lknlpdklka eiainvhldt lkkvrifqdc eagllielvl klkptvfspg dyickkgdig
      541 remyiikegk lavvaddgit qfvvlsdgsy fgeisilnik gsksgnrrta nirsigysdl
      601 fclskddlme alteypeakk aleekgrqil mkdnlideea akagadpkdl eekverleta
      661 ldtlqtrfar llaeytasqq kvkqrlakve trvkkygsgt lsvgeaeaek teeekkn
//
LOCUS       XP_053942087             673 aa            linear   VRT 09-MAR-2023
DEFINITION  cyclic nucleotide-gated cation channel alpha-3 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053942087
VERSION     XP_053942087.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086112.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..673
                     /product="cyclic nucleotide-gated cation channel alpha-3
                     isoform X3"
                     /calculated_mol_wt=77239
     Region          148..390
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          462..578
                     /region_name="CAP_ED"
                     /note="effector domain of the CAP family of transcription
                     factors; members include CAP (or cAMP receptor protein
                     (CRP)), which binds cAMP, FNR (fumarate and nitrate
                     reduction), which uses an iron-sulfur cluster to sense
                     oxygen) and CooA, a heme containing CO...; cd00038"
                     /db_xref="CDD:237999"
     Site            order(528..529,544..546)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:237999"
     Site            order(566..568,572..574)
                     /site_type="other"
                     /note="flexible hinge region"
                     /db_xref="CDD:237999"
     Region          578..646
                     /region_name="CLZ"
                     /note="C-terminal leucine zipper domain of cyclic
                     nucleotide-gated channels; pfam16526"
                     /db_xref="CDD:465160"
     CDS             1..673
                     /gene="CNGA3"
                     /coded_by="XM_054086112.1:295..2316"
                     /db_xref="GeneID:104056659"
ORIGIN      
        1 makintqhsy pgmhslsvrt tdedierign gyirthslce dasselqrvi svdgrhlses
       61 qtssftgrga marlsrfvis vrswatrhsh hedqrpdsfl erirgpelie vssrqsnirs
      121 flgireqpgg ikrkkkeiyv idpssniyyn wltiiaapvf ynwcmlvcra cfdelqvdhi
      181 klwlfldygs diiyvfdmfv rfrtgfleqg llvhdekklr dhytktvqfk ldvlslvptd
      241 laylklglny pelrfnrllr isrlfeffdr tetrtnypnm frignlvlyi liiihwnaci
      301 yfaiskligf gtdswvypnv sipeygrlsr kyiyslywst ltlttigetp ppvkdeeylf
      361 vvidflvgvl ifativgnvg smisnmnasr aefqakvdsi kqymhfrkvt kdlearvikw
      421 fdylwtnkkt vdekevlknl pdklkaeiai nvhldtlkkv rifqdceagl lielvlklkp
      481 tvfspgdyic kkgdigremy iikegklavv addgitqfvv lsdgsyfgei silnikgsks
      541 gnrrtanirs igysdlfcls kddlmealte ypeakkalee kgrqilmkdn lideeaakag
      601 adpkdleekv erletaldtl qtrfarllae ytasqqkvkq rlakvetrvk kygsgtlsvg
      661 eaeaekteee kkn
//
LOCUS       XP_053942203             433 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: glycogen synthase kinase-3 beta [Cuculus
            canorus].
ACCESSION   XP_053942203
VERSION     XP_053942203.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086228.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..433
                     /product="LOW QUALITY PROTEIN: glycogen synthase kinase-3
                     beta"
                     /calculated_mol_wt=47996
     Region          51..356
                     /region_name="STKc_GSK3"
                     /note="The catalytic domain of the Serine/Threonine
                     Kinase, Glycogen Synthase Kinase 3; cd14137"
                     /db_xref="CDD:271039"
     Site            order(62..66,70,83,85,96,110,132..135,138,140..141,181,
                     183,185..186,188,200,203,214,216..219,221,259)
                     /site_type="active"
                     /db_xref="CDD:271039"
     Site            order(62..65,70,83,85,110,132..135,138,183,185..186,188,
                     200)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:271039"
     Site            order(66..67,212..220,228..229,260..264,266..267,271,
                     291..294)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:271039"
     Site            order(96,140,181,183,203,214,216..219,221,259)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:271039"
     Site            order(199..209,211..221)
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:271039"
     Site            order(228,263..264,266..267,270..271,291..296)
                     /site_type="other"
                     /note="axin binding site [polypeptide binding]"
                     /db_xref="CDD:271039"
     CDS             1..433
                     /gene="GSK3B"
                     /coded_by="XM_054086228.1:80..1381"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 2 codons"
                     /db_xref="GeneID:104055817"
ORIGIN      
        1 msgrprttsf aesckpvqqp safgsmkvsr dkdgskvttv vatpgqgpdr pqevsytdtk
       61 vigngsfgvv yqaklcdsge lvaikkvlqd krfknrelqi mrkldhcniv rlryffyssg
      121 ekkdevylnl vldyvpetvy rvarhysrak qtlpmiyvkl ymyqlfrsla yihsfgichr
      181 dikpqnllld pdtavlklcd fgsakqlvrg epnvsyicsr yyrapelifg atdytssidv
      241 wsagcvlael llgqpifpgd sgvdqlveii kvlgtptreq iremnpnyte fkfpqikahp
      301 wtkdssgtgh ftsgvrvfrp rtppeaialc srlleytpta rltpleacah sffdelrdpn
      361 vklpngrekp alfnfttqel ssnpslasil ipaharnqaa astptnataa sdvnagervq
      421 tnsvatasas nst
//
LOCUS       XP_053942328            1197 aa            linear   VRT 09-MAR-2023
DEFINITION  cohesin subunit SA-2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053942328
VERSION     XP_053942328.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086353.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1197
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1197
                     /product="cohesin subunit SA-2 isoform X1"
                     /calculated_mol_wt=137256
     Region          98..>418
                     /region_name="IRR1"
                     /note="Cohesin [Cell division and chromosome
                     partitioning]; COG5537"
                     /db_xref="CDD:227824"
     Region          178..290
                     /region_name="STAG"
                     /note="STAG domain; pfam08514"
                     /db_xref="CDD:462502"
     CDS             1..1197
                     /gene="LOC104063739"
                     /coded_by="XM_054086353.1:143..3736"
                     /db_xref="GeneID:104063739"
ORIGIN      
        1 miaepntasn lpsqkenavh detvpgsavq ngscvrngnl ktprekrkvr eqcenirrns
       61 ssgrrlsqlq ngevieavtl fevvsmgkra mqsvvddwve aykqdrnval ldlinffiqc
      121 sgcqgmvtae mfqslhkkdv mrrmtetfde etglqykkfm aypwiltvtw pvdmdnedyp
      181 lirtgpywkk fkanfcefia vlvqqcqysi lydsylmdtv islltglads mvrafrhtst
      241 laamklltav vsvhlnldvn khnarrlyev ekkrisgkrt syrleqlerk rkeyehklld
      301 iqnmmnaifk gtfltrycdv ipeiratcie eicnwiktyp daflndsylk yigwmlydkq
      361 aevrlkcllg lqgiyskkel vsrmelftsr fkerivsmpl dkdhevavqa mkllmlmsqn
      421 cedmlsaedc emlnqfvytt hrplavaage flykrllshe gdeevqpkve gktgasadql
      481 krlirffles elhkhvayli dslwdwagkf lkdwecmttl llgnaegdge alsdahesvl
      541 ieiilatvre aaeghppvgr gaakkilsvk ekkiqledct kitehfivvl pellakystd
      601 aekvtnllqi pqyydldvys mghlekhlda llreikdivv khsdmsvlea ssktyyilcs
      661 eeiaiysqvd rartqlidel meqlnqllds fwqkeegfct daaeisrihs alrrvaafhn
      721 ahdltkwnly dktlrllvfe mehgnlpvlm ilpalqcmyf sllwqlatvs vnspketlfa
      781 lrrelrrfsq icmcflhhke kdvrekafmi lcdwllilsh rdsnnneeav elldclpsts
      841 lqeklllfiq ehvfmeeeee skdvteeeer edescklddl hkkrsllaay cklivynvve
      901 mtaaaeiyky yvktyndfgd iiketlsktr hsnriqsakt lvlclqqlfq thtenqesss
      961 gvdfssasft nmkelarrfs ltfgwdqvks resvamihke giefafqgat gvdgrclppn
     1021 lsflliisef snkllkpdkr lvyaylqryi veplpcrgde wqpliwyrns llasedeess
     1081 vlgssgkwsp vgaskvpsfk rklsngslpe tskteaaska pdlqcasqlp saagksrkrl
     1141 ksremhlqeh lpflcpgglq rryckdeikt egaseegqae dtvedvdvdv vgadqdn
//
LOCUS       XP_053942402            1171 aa            linear   VRT 09-MAR-2023
DEFINITION  cohesin subunit SA-2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053942402
VERSION     XP_053942402.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086427.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1171
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1171
                     /product="cohesin subunit SA-2 isoform X2"
                     /calculated_mol_wt=134320
     Region          98..>418
                     /region_name="IRR1"
                     /note="Cohesin [Cell division and chromosome
                     partitioning]; COG5537"
                     /db_xref="CDD:227824"
     Region          178..290
                     /region_name="STAG"
                     /note="STAG domain; pfam08514"
                     /db_xref="CDD:462502"
     CDS             1..1171
                     /gene="LOC104063739"
                     /coded_by="XM_054086427.1:143..3658"
                     /db_xref="GeneID:104063739"
ORIGIN      
        1 miaepntasn lpsqkenavh detvpgsavq ngscvrngnl ktprekrkvr eqcenirrns
       61 ssgrrlsqlq ngevieavtl fevvsmgkra mqsvvddwve aykqdrnval ldlinffiqc
      121 sgcqgmvtae mfqslhkkdv mrrmtetfde etglqykkfm aypwiltvtw pvdmdnedyp
      181 lirtgpywkk fkanfcefia vlvqqcqysi lydsylmdtv islltglads mvrafrhtst
      241 laamklltav vsvhlnldvn khnarrlyev ekkrisgkrt syrleqlerk rkeyehklld
      301 iqnmmnaifk gtfltrycdv ipeiratcie eicnwiktyp daflndsylk yigwmlydkq
      361 aevrlkcllg lqgiyskkel vsrmelftsr fkerivsmpl dkdhevavqa mkllmlmsqn
      421 cedmlsaedc emlnqfvytt hrplavaage flykrllshe gdeevqpkve gktgasadql
      481 krlirffles elhkhvayli dslwdwagkf lkdwecmttl llgnaegdge alsdahesvl
      541 ieiilatvre aaeghppvgr gaakkilsvk ekkiqledct kitehfivvl pellakystd
      601 aekvtnllqi pqyydldvys mghlekhlda llreikdivv khsdmsvlea ssktyyilcs
      661 eeiaiysqvd rartqlidel meqlnqllds fwqkeegfct daaeisrihs alrrvaafhn
      721 ahdltkwnly dktlrllvfe mehgnlpvle tlfalrrelr rfsqicmcfl hhkekdvrek
      781 afmilcdwll ilshrdsnnn eeavelldcl pstslqekll lfiqehvfme eeeeskdvte
      841 eeeredesck lddlhkkrsl laaycklivy nvvemtaaae iykyyvktyn dfgdiiketl
      901 sktrhsnriq saktlvlclq qlfqthtenq esssgvdfss asftnmkela rrfsltfgwd
      961 qvksresvam ihkegiefaf qgatgvdgrc lppnlsflli isefsnkllk pdkrlvyayl
     1021 qryiveplpc rgdewqpliw yrnsllased eessvlgssg kwspvgaskv psfkrklsng
     1081 slpetsktea askapdlqca sqlpsaagks rkrlksremh lqehlpflcp gglqrryckd
     1141 eiktegasee gqaedtvedv dvdvvgadqd n
//
LOCUS       XP_053942507             581 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein phosphatase 2A regulatory subunit B''
            subunit beta isoform X1 [Cuculus canorus].
ACCESSION   XP_053942507
VERSION     XP_053942507.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086532.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..581
                     /product="serine/threonine-protein phosphatase 2A
                     regulatory subunit B'' subunit beta isoform X1"
                     /calculated_mol_wt=67440
     Region          137..491
                     /region_name="PPP2R3B"
                     /note="serine/threonine protein phosphatase 2A regulatory
                     subunit B' subunit beta; cd21507"
                     /db_xref="CDD:410340"
     CDS             1..581
                     /gene="PPP2R3B"
                     /coded_by="XM_054086532.1:272..2017"
                     /db_xref="GeneID:104063718"
ORIGIN      
        1 mspgkvlqpv lkmkvdelff cwlsqpatql tlkeglrrik neekteidng hsgngknerc
       61 tnknsnssqc isrdtrlplv sfnppqlstt lplatpastr nvstvraarr ssgtkvvqtk
      121 keetlpssls qniptfyfpr gcpkekvnid avitkiertf sefpneratl edmgkvakac
      181 ecplywkgpl fycaggertg yvsvhkfvam wrkilqtcyd daakfvhllm spgcnylvqe
      241 dfipflqdvv nshpgllflk eaaefhsryi ttviqrifyt vnrswsgkit cnelrksnfl
      301 qnvalleeea dinqlteyfs yehfyviyck fweldtdhdl yidrkdlarh ndhaisnrmi
      361 erifsgavtr grkaqkdgki syadfvwfli seedkktpts ieywfrcmdl dgdgalsmye
      421 leyfyeeqcq kldnmaiepl pfedclcqml dlvkpqyegk itlhdlkrck ltnvffdtff
      481 niekyfdheq kdqfsmlrds egesqeisdw ekyaaeeydi lvaeeaagdq wndgyeaeln
      541 pvdhqkanvl kyqmekrpff empshlagvd ldeydyeeyf e
//
LOCUS       XP_009564263             514 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein phosphatase 2A regulatory subunit B''
            subunit beta isoform X2 [Cuculus canorus].
ACCESSION   XP_009564263
VERSION     XP_009564263.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565968.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564263.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..514
                     /product="serine/threonine-protein phosphatase 2A
                     regulatory subunit B'' subunit beta isoform X2"
                     /calculated_mol_wt=60434
     Region          70..424
                     /region_name="PPP2R3B"
                     /note="serine/threonine protein phosphatase 2A regulatory
                     subunit B' subunit beta; cd21507"
                     /db_xref="CDD:410340"
     CDS             1..514
                     /gene="PPP2R3B"
                     /coded_by="XM_009565968.2:313..1857"
                     /db_xref="GeneID:104063718"
ORIGIN      
        1 mksesmrike islrqdpdlr kelallargc dfvlpsrfkk rlkafqqvqv qtkkeetlps
       61 slsqniptfy fprgcpkekv nidavitkie rtfsefpner atledmgkva kacecplywk
      121 gplfycagge rtgyvsvhkf vamwrkilqt cyddaakfvh llmspgcnyl vqedfipflq
      181 dvvnshpgll flkeaaefhs ryittviqri fytvnrswsg kitcnelrks nflqnvalle
      241 eeadinqlte yfsyehfyvi yckfweldtd hdlyidrkdl arhndhaisn rmierifsga
      301 vtrgrkaqkd gkisyadfvw fliseedkkt ptsieywfrc mdldgdgals myeleyfyee
      361 qcqkldnmai eplpfedclc qmldlvkpqy egkitlhdlk rckltnvffd tffniekyfd
      421 heqkdqfsml rdsegesqei sdwekyaaee ydilvaeeaa gdqwndgyea elnpvdhqka
      481 nvlkyqmekr pffempshla gvdldeydye eyfe
//
LOCUS       XP_009554929            1088 aa            linear   VRT 09-MAR-2023
DEFINITION  myocardin-related transcription factor A isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009554929
VERSION     XP_009554929.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556634.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1088
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1088
                     /product="myocardin-related transcription factor A isoform
                     X1"
                     /calculated_mol_wt=116589
     Region          42..67
                     /region_name="RPEL"
                     /note="Repeat in Drosophila CG10860, human KIAA0680 and C.
                     elegans F26H9.2; smart00707"
                     /db_xref="CDD:128947"
     Region          86..111
                     /region_name="RPEL"
                     /note="Repeat in Drosophila CG10860, human KIAA0680 and C.
                     elegans F26H9.2; smart00707"
                     /db_xref="CDD:128947"
     Region          130..155
                     /region_name="RPEL"
                     /note="Repeat in Drosophila CG10860, human KIAA0680 and C.
                     elegans F26H9.2; smart00707"
                     /db_xref="CDD:128947"
     Region          411..444
                     /region_name="SAP"
                     /note="SAP domain; pfam02037"
                     /db_xref="CDD:460424"
     CDS             1..1088
                     /gene="MRTFA"
                     /coded_by="XM_009556634.2:307..3573"
                     /db_xref="GeneID:104055506"
ORIGIN      
        1 mldkaktlqp ayvgivplae tvskqgkscs styqdsyhsl revlqlklqq rrtreelvsq
       61 gimpplkspa afheqrrsle rartedylkr kirsrperse lvrmhileet saepslqakq
      121 lklkrarlad dlnekiaqrp gpmelvekni lpvesslkea iivgqvnypk vadnssfded
      181 ssdalspeqp ashesqgsvp spmdsricep lpsttgtsla qgtsqlqisa dssetlflpe
      241 qpppplpppp llppnltngv altaskpppt likqsqpksa seksqrskka kelkpkvkkl
      301 kyhqyippdq kqdkgappmd ssyakilqqq qlflqlqiln qqqqqhynyq tilpappkpp
      361 geqqsgasap avrnlsatvs sassvssgss glmrqnsnaa vgkpgplpan ldemkvaelk
      421 qelklralpv sgtktdlier lrayqeqnga asqttpnpkp staavlpkaa evvvafpaar
      481 lstgpalvtt giapaevvva tvtsggvmkf gstgstppvs ptpsersqms tgdensatgd
      541 tfgemvtspl tqltlqaspv qflvkeessk ssscsvnaap rsercstsns rdaevrdkdq
      601 mlqekdkqie eltrmlkqkq qlvemlrlql eqekrsqqsl papaavgegt alasnpgafg
      661 iqvksengfl scqsakqssg qtdqfspapt asqmdtsnps pvpkkavmvk qevpaaeaep
      721 pcqshsprlf lgqqastlsd likgtppptl itdstgthiv ltvtkqsaer qglsphgkag
      781 sscptlqrvq sspaktssqp pcqlpastpp qpaqqqkqqp tqqqkqqplq qqqqprglnq
      841 svrkpssqps spaarspsqm dleqqqhtsl fgtpppplpv pavpvkeppg yeeamkqqpk
      901 aqengcssqq mddlfdilie sgeisadfkd qsspagkepp vapacsspps shqsselavp
      961 vslgqpvpvg rledflesst glplltaghd gpeplslidd lhsemlsssa ildhppspmd
     1021 tselhfahep sggitldlae anldsmdwle lpggpvmsla plstaapslf stdfldghdl
     1081 qlhwdscl
//
LOCUS       XP_053942759            1061 aa            linear   VRT 09-MAR-2023
DEFINITION  myocardin-related transcription factor A isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053942759
VERSION     XP_053942759.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086784.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1061
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1061
                     /product="myocardin-related transcription factor A isoform
                     X2"
                     /calculated_mol_wt=113685
     Region          15..40
                     /region_name="RPEL"
                     /note="Repeat in Drosophila CG10860, human KIAA0680 and C.
                     elegans F26H9.2; smart00707"
                     /db_xref="CDD:128947"
     Region          59..84
                     /region_name="RPEL"
                     /note="Repeat in Drosophila CG10860, human KIAA0680 and C.
                     elegans F26H9.2; smart00707"
                     /db_xref="CDD:128947"
     Region          103..128
                     /region_name="RPEL"
                     /note="Repeat in Drosophila CG10860, human KIAA0680 and C.
                     elegans F26H9.2; smart00707"
                     /db_xref="CDD:128947"
     Region          384..417
                     /region_name="SAP"
                     /note="SAP domain; pfam02037"
                     /db_xref="CDD:460424"
     CDS             1..1061
                     /gene="MRTFA"
                     /coded_by="XM_054086784.1:16..3201"
                     /db_xref="GeneID:104055506"
ORIGIN      
        1 mtplesemqm ttlqsvlqlk lqqrrtreel vsqgimpplk spaafheqrr slerartedy
       61 lkrkirsrpe rselvrmhil eetsaepslq akqlklkrar laddlnekia qrpgpmelve
      121 knilpvessl keaiivgqvn ypkvadnssf dedssdalsp eqpashesqg svpspmdsri
      181 ceplpsttgt slaqgtsqlq isadssetlf lpeqpppplp pppllppnlt ngvaltaskp
      241 pptlikqsqp ksaseksqrs kkakelkpkv kklkyhqyip pdqkqdkgap pmdssyakil
      301 qqqqlflqlq ilnqqqqqhy nyqtilpapp kppgeqqsga sapavrnlsa tvssassvss
      361 gssglmrqns naavgkpgpl panldemkva elkqelklra lpvsgtktdl ierlrayqeq
      421 ngaasqttpn pkpstaavlp kaaevvvafp aarlstgpal vttgiapaev vvatvtsggv
      481 mkfgstgstp pvsptpsers qmstgdensa tgdtfgemvt spltqltlqa spvqflvkee
      541 sskssscsvn aaprsercst snsrdaevrd kdqmlqekdk qieeltrmlk qkqqlvemlr
      601 lqleqekrsq qslpapaavg egtalasnpg afgiqvksen gflscqsakq ssgqtdqfsp
      661 aptasqmdts npspvpkkav mvkqevpaae aeppcqshsp rlflgqqast lsdlikgtpp
      721 ptlitdstgt hivltvtkqs aerqglsphg kagsscptlq rvqsspakts sqppcqlpas
      781 tppqpaqqqk qqptqqqkqq plqqqqqprg lnqsvrkpss qpsspaarsp sqmdleqqqh
      841 tslfgtpppp lpvpavpvke ppgyeeamkq qpkaqengcs sqqmddlfdi liesgeisad
      901 fkdqsspagk eppvapacss ppsshqssel avpvslgqpv pvgrledfle sstglpllta
      961 ghdgpeplsl iddlhsemls ssaildhpps pmdtselhfa hepsggitld laeanldsmd
     1021 wlelpggpvm slaplstaap slfstdfldg hdlqlhwdsc l
//
LOCUS       XP_053942880             753 aa            linear   VRT 09-MAR-2023
DEFINITION  small G protein signaling modulator 3 [Cuculus canorus].
ACCESSION   XP_053942880
VERSION     XP_053942880.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086905.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..753
                     /product="small G protein signaling modulator 3"
                     /calculated_mol_wt=86213
     Region          115..326
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     Region          486..538
                     /region_name="SH3_SGSM3"
                     /note="Src Homology 3 domain of Small G protein Signaling
                     Modulator 3; cd11813"
                     /db_xref="CDD:212747"
     Site            order(491,493,496,500,518..519,532,534..535)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212747"
     Region          516..722
                     /region_name="RUN_SGSM3"
                     /note="RUN domain found in small G protein signaling
                     modulator 3 (SGSM3) and similar proteins; cd17688"
                     /db_xref="CDD:439050"
     CDS             1..753
                     /gene="SGSM3"
                     /coded_by="XM_054086905.1:299..2560"
                     /db_xref="GeneID:104055508"
ORIGIN      
        1 msghhtpsag gpfsaltpsi wpqeilakys qkeesveqpe fhydefgfri dkedgaepns
       61 skllgvplte epqqrlkwqa hlefthnhdv gdltwdkiev tlphsdklrs lvlagiphsm
      121 rpqlwmrlsg alqkkrnsem syrdivknss ndetiaakqi ekdllrtmps nacfsnmnsi
      181 gvprlrrilr glawlypeig ycqgtgmmaa slllfleeed afwmmcaiie elvpasyfst
      241 tlmgvqtdqr vlrqlivqyl prldkllqeh dielslitlh wfltsfasvv hiklllriwd
      301 lffyegslvl fqltlgmlsm kedeliqsen sasifntlsd ipsqiedadv llreamrvag
      361 sltdvavetq rckhlaylia dqgqllnssp tvnnlskivr rrtqrrksgi tsllfgdddl
      421 ealkaknikq telvadlrea ilqvarhfqc vdpkncsidl tpdysmeshq rdhenyvacs
      481 rnrrrrakal ldferhddde lgfrkndiit iisqrdehcw vgelnglrgw fpakfveild
      541 erskeysiag ddsvtegvtd lvrgtlcpal kaifehglkk psllggachp wlfieeaasr
      601 everdfdsvy srlvlcktyr ldedgkvltp eellyravqa vnmthdaahv qmdvklrsli
      661 cvglneqvlh lwlevlcssl qtvekwfhpw sflrspgwvq ikcelrvlck fafslsqdwe
      721 lpikreekek kplkegvqdm lvkhhlfswd idg
//
LOCUS       XP_053942954             753 aa            linear   VRT 09-MAR-2023
DEFINITION  small G protein signaling modulator 3 [Cuculus canorus].
ACCESSION   XP_053942954
VERSION     XP_053942954.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086979.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..753
                     /product="small G protein signaling modulator 3"
                     /calculated_mol_wt=86213
     Region          115..326
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     Region          486..538
                     /region_name="SH3_SGSM3"
                     /note="Src Homology 3 domain of Small G protein Signaling
                     Modulator 3; cd11813"
                     /db_xref="CDD:212747"
     Site            order(491,493,496,500,518..519,532,534..535)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212747"
     Region          516..722
                     /region_name="RUN_SGSM3"
                     /note="RUN domain found in small G protein signaling
                     modulator 3 (SGSM3) and similar proteins; cd17688"
                     /db_xref="CDD:439050"
     CDS             1..753
                     /gene="SGSM3"
                     /coded_by="XM_054086979.1:276..2537"
                     /db_xref="GeneID:104055508"
ORIGIN      
        1 msghhtpsag gpfsaltpsi wpqeilakys qkeesveqpe fhydefgfri dkedgaepns
       61 skllgvplte epqqrlkwqa hlefthnhdv gdltwdkiev tlphsdklrs lvlagiphsm
      121 rpqlwmrlsg alqkkrnsem syrdivknss ndetiaakqi ekdllrtmps nacfsnmnsi
      181 gvprlrrilr glawlypeig ycqgtgmmaa slllfleeed afwmmcaiie elvpasyfst
      241 tlmgvqtdqr vlrqlivqyl prldkllqeh dielslitlh wfltsfasvv hiklllriwd
      301 lffyegslvl fqltlgmlsm kedeliqsen sasifntlsd ipsqiedadv llreamrvag
      361 sltdvavetq rckhlaylia dqgqllnssp tvnnlskivr rrtqrrksgi tsllfgdddl
      421 ealkaknikq telvadlrea ilqvarhfqc vdpkncsidl tpdysmeshq rdhenyvacs
      481 rnrrrrakal ldferhddde lgfrkndiit iisqrdehcw vgelnglrgw fpakfveild
      541 erskeysiag ddsvtegvtd lvrgtlcpal kaifehglkk psllggachp wlfieeaasr
      601 everdfdsvy srlvlcktyr ldedgkvltp eellyravqa vnmthdaahv qmdvklrsli
      661 cvglneqvlh lwlevlcssl qtvekwfhpw sflrspgwvq ikcelrvlck fafslsqdwe
      721 lpikreekek kplkegvqdm lvkhhlfswd idg
//
LOCUS       XP_053943024             753 aa            linear   VRT 09-MAR-2023
DEFINITION  small G protein signaling modulator 3 [Cuculus canorus].
ACCESSION   XP_053943024
VERSION     XP_053943024.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087049.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..753
                     /product="small G protein signaling modulator 3"
                     /calculated_mol_wt=86213
     Region          115..326
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     Region          486..538
                     /region_name="SH3_SGSM3"
                     /note="Src Homology 3 domain of Small G protein Signaling
                     Modulator 3; cd11813"
                     /db_xref="CDD:212747"
     Site            order(491,493,496,500,518..519,532,534..535)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212747"
     Region          516..722
                     /region_name="RUN_SGSM3"
                     /note="RUN domain found in small G protein signaling
                     modulator 3 (SGSM3) and similar proteins; cd17688"
                     /db_xref="CDD:439050"
     CDS             1..753
                     /gene="SGSM3"
                     /coded_by="XM_054087049.1:210..2471"
                     /db_xref="GeneID:104055508"
ORIGIN      
        1 msghhtpsag gpfsaltpsi wpqeilakys qkeesveqpe fhydefgfri dkedgaepns
       61 skllgvplte epqqrlkwqa hlefthnhdv gdltwdkiev tlphsdklrs lvlagiphsm
      121 rpqlwmrlsg alqkkrnsem syrdivknss ndetiaakqi ekdllrtmps nacfsnmnsi
      181 gvprlrrilr glawlypeig ycqgtgmmaa slllfleeed afwmmcaiie elvpasyfst
      241 tlmgvqtdqr vlrqlivqyl prldkllqeh dielslitlh wfltsfasvv hiklllriwd
      301 lffyegslvl fqltlgmlsm kedeliqsen sasifntlsd ipsqiedadv llreamrvag
      361 sltdvavetq rckhlaylia dqgqllnssp tvnnlskivr rrtqrrksgi tsllfgdddl
      421 ealkaknikq telvadlrea ilqvarhfqc vdpkncsidl tpdysmeshq rdhenyvacs
      481 rnrrrrakal ldferhddde lgfrkndiit iisqrdehcw vgelnglrgw fpakfveild
      541 erskeysiag ddsvtegvtd lvrgtlcpal kaifehglkk psllggachp wlfieeaasr
      601 everdfdsvy srlvlcktyr ldedgkvltp eellyravqa vnmthdaahv qmdvklrsli
      661 cvglneqvlh lwlevlcssl qtvekwfhpw sflrspgwvq ikcelrvlck fafslsqdwe
      721 lpikreekek kplkegvqdm lvkhhlfswd idg
//
LOCUS       XP_053943103             753 aa            linear   VRT 09-MAR-2023
DEFINITION  small G protein signaling modulator 3 [Cuculus canorus].
ACCESSION   XP_053943103
VERSION     XP_053943103.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087128.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..753
                     /product="small G protein signaling modulator 3"
                     /calculated_mol_wt=86213
     Region          115..326
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     Region          486..538
                     /region_name="SH3_SGSM3"
                     /note="Src Homology 3 domain of Small G protein Signaling
                     Modulator 3; cd11813"
                     /db_xref="CDD:212747"
     Site            order(491,493,496,500,518..519,532,534..535)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212747"
     Region          516..722
                     /region_name="RUN_SGSM3"
                     /note="RUN domain found in small G protein signaling
                     modulator 3 (SGSM3) and similar proteins; cd17688"
                     /db_xref="CDD:439050"
     CDS             1..753
                     /gene="SGSM3"
                     /coded_by="XM_054087128.1:199..2460"
                     /db_xref="GeneID:104055508"
ORIGIN      
        1 msghhtpsag gpfsaltpsi wpqeilakys qkeesveqpe fhydefgfri dkedgaepns
       61 skllgvplte epqqrlkwqa hlefthnhdv gdltwdkiev tlphsdklrs lvlagiphsm
      121 rpqlwmrlsg alqkkrnsem syrdivknss ndetiaakqi ekdllrtmps nacfsnmnsi
      181 gvprlrrilr glawlypeig ycqgtgmmaa slllfleeed afwmmcaiie elvpasyfst
      241 tlmgvqtdqr vlrqlivqyl prldkllqeh dielslitlh wfltsfasvv hiklllriwd
      301 lffyegslvl fqltlgmlsm kedeliqsen sasifntlsd ipsqiedadv llreamrvag
      361 sltdvavetq rckhlaylia dqgqllnssp tvnnlskivr rrtqrrksgi tsllfgdddl
      421 ealkaknikq telvadlrea ilqvarhfqc vdpkncsidl tpdysmeshq rdhenyvacs
      481 rnrrrrakal ldferhddde lgfrkndiit iisqrdehcw vgelnglrgw fpakfveild
      541 erskeysiag ddsvtegvtd lvrgtlcpal kaifehglkk psllggachp wlfieeaasr
      601 everdfdsvy srlvlcktyr ldedgkvltp eellyravqa vnmthdaahv qmdvklrsli
      661 cvglneqvlh lwlevlcssl qtvekwfhpw sflrspgwvq ikcelrvlck fafslsqdwe
      721 lpikreekek kplkegvqdm lvkhhlfswd idg
//
LOCUS       XP_053943174             753 aa            linear   VRT 09-MAR-2023
DEFINITION  small G protein signaling modulator 3 [Cuculus canorus].
ACCESSION   XP_053943174
VERSION     XP_053943174.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087199.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..753
                     /product="small G protein signaling modulator 3"
                     /calculated_mol_wt=86213
     Region          115..326
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     Region          486..538
                     /region_name="SH3_SGSM3"
                     /note="Src Homology 3 domain of Small G protein Signaling
                     Modulator 3; cd11813"
                     /db_xref="CDD:212747"
     Site            order(491,493,496,500,518..519,532,534..535)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212747"
     Region          516..722
                     /region_name="RUN_SGSM3"
                     /note="RUN domain found in small G protein signaling
                     modulator 3 (SGSM3) and similar proteins; cd17688"
                     /db_xref="CDD:439050"
     CDS             1..753
                     /gene="SGSM3"
                     /coded_by="XM_054087199.1:296..2557"
                     /db_xref="GeneID:104055508"
ORIGIN      
        1 msghhtpsag gpfsaltpsi wpqeilakys qkeesveqpe fhydefgfri dkedgaepns
       61 skllgvplte epqqrlkwqa hlefthnhdv gdltwdkiev tlphsdklrs lvlagiphsm
      121 rpqlwmrlsg alqkkrnsem syrdivknss ndetiaakqi ekdllrtmps nacfsnmnsi
      181 gvprlrrilr glawlypeig ycqgtgmmaa slllfleeed afwmmcaiie elvpasyfst
      241 tlmgvqtdqr vlrqlivqyl prldkllqeh dielslitlh wfltsfasvv hiklllriwd
      301 lffyegslvl fqltlgmlsm kedeliqsen sasifntlsd ipsqiedadv llreamrvag
      361 sltdvavetq rckhlaylia dqgqllnssp tvnnlskivr rrtqrrksgi tsllfgdddl
      421 ealkaknikq telvadlrea ilqvarhfqc vdpkncsidl tpdysmeshq rdhenyvacs
      481 rnrrrrakal ldferhddde lgfrkndiit iisqrdehcw vgelnglrgw fpakfveild
      541 erskeysiag ddsvtegvtd lvrgtlcpal kaifehglkk psllggachp wlfieeaasr
      601 everdfdsvy srlvlcktyr ldedgkvltp eellyravqa vnmthdaahv qmdvklrsli
      661 cvglneqvlh lwlevlcssl qtvekwfhpw sflrspgwvq ikcelrvlck fafslsqdwe
      721 lpikreekek kplkegvqdm lvkhhlfswd idg
//
LOCUS       XP_053943246             753 aa            linear   VRT 09-MAR-2023
DEFINITION  small G protein signaling modulator 3 [Cuculus canorus].
ACCESSION   XP_053943246
VERSION     XP_053943246.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087271.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..753
                     /product="small G protein signaling modulator 3"
                     /calculated_mol_wt=86213
     Region          115..326
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     Region          486..538
                     /region_name="SH3_SGSM3"
                     /note="Src Homology 3 domain of Small G protein Signaling
                     Modulator 3; cd11813"
                     /db_xref="CDD:212747"
     Site            order(491,493,496,500,518..519,532,534..535)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212747"
     Region          516..722
                     /region_name="RUN_SGSM3"
                     /note="RUN domain found in small G protein signaling
                     modulator 3 (SGSM3) and similar proteins; cd17688"
                     /db_xref="CDD:439050"
     CDS             1..753
                     /gene="SGSM3"
                     /coded_by="XM_054087271.1:649..2910"
                     /db_xref="GeneID:104055508"
ORIGIN      
        1 msghhtpsag gpfsaltpsi wpqeilakys qkeesveqpe fhydefgfri dkedgaepns
       61 skllgvplte epqqrlkwqa hlefthnhdv gdltwdkiev tlphsdklrs lvlagiphsm
      121 rpqlwmrlsg alqkkrnsem syrdivknss ndetiaakqi ekdllrtmps nacfsnmnsi
      181 gvprlrrilr glawlypeig ycqgtgmmaa slllfleeed afwmmcaiie elvpasyfst
      241 tlmgvqtdqr vlrqlivqyl prldkllqeh dielslitlh wfltsfasvv hiklllriwd
      301 lffyegslvl fqltlgmlsm kedeliqsen sasifntlsd ipsqiedadv llreamrvag
      361 sltdvavetq rckhlaylia dqgqllnssp tvnnlskivr rrtqrrksgi tsllfgdddl
      421 ealkaknikq telvadlrea ilqvarhfqc vdpkncsidl tpdysmeshq rdhenyvacs
      481 rnrrrrakal ldferhddde lgfrkndiit iisqrdehcw vgelnglrgw fpakfveild
      541 erskeysiag ddsvtegvtd lvrgtlcpal kaifehglkk psllggachp wlfieeaasr
      601 everdfdsvy srlvlcktyr ldedgkvltp eellyravqa vnmthdaahv qmdvklrsli
      661 cvglneqvlh lwlevlcssl qtvekwfhpw sflrspgwvq ikcelrvlck fafslsqdwe
      721 lpikreekek kplkegvqdm lvkhhlfswd idg
//
LOCUS       XP_053943330             753 aa            linear   VRT 09-MAR-2023
DEFINITION  small G protein signaling modulator 3 [Cuculus canorus].
ACCESSION   XP_053943330
VERSION     XP_053943330.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087355.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..753
                     /product="small G protein signaling modulator 3"
                     /calculated_mol_wt=86213
     Region          115..326
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     Region          486..538
                     /region_name="SH3_SGSM3"
                     /note="Src Homology 3 domain of Small G protein Signaling
                     Modulator 3; cd11813"
                     /db_xref="CDD:212747"
     Site            order(491,493,496,500,518..519,532,534..535)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212747"
     Region          516..722
                     /region_name="RUN_SGSM3"
                     /note="RUN domain found in small G protein signaling
                     modulator 3 (SGSM3) and similar proteins; cd17688"
                     /db_xref="CDD:439050"
     CDS             1..753
                     /gene="SGSM3"
                     /coded_by="XM_054087355.1:117..2378"
                     /db_xref="GeneID:104055508"
ORIGIN      
        1 msghhtpsag gpfsaltpsi wpqeilakys qkeesveqpe fhydefgfri dkedgaepns
       61 skllgvplte epqqrlkwqa hlefthnhdv gdltwdkiev tlphsdklrs lvlagiphsm
      121 rpqlwmrlsg alqkkrnsem syrdivknss ndetiaakqi ekdllrtmps nacfsnmnsi
      181 gvprlrrilr glawlypeig ycqgtgmmaa slllfleeed afwmmcaiie elvpasyfst
      241 tlmgvqtdqr vlrqlivqyl prldkllqeh dielslitlh wfltsfasvv hiklllriwd
      301 lffyegslvl fqltlgmlsm kedeliqsen sasifntlsd ipsqiedadv llreamrvag
      361 sltdvavetq rckhlaylia dqgqllnssp tvnnlskivr rrtqrrksgi tsllfgdddl
      421 ealkaknikq telvadlrea ilqvarhfqc vdpkncsidl tpdysmeshq rdhenyvacs
      481 rnrrrrakal ldferhddde lgfrkndiit iisqrdehcw vgelnglrgw fpakfveild
      541 erskeysiag ddsvtegvtd lvrgtlcpal kaifehglkk psllggachp wlfieeaasr
      601 everdfdsvy srlvlcktyr ldedgkvltp eellyravqa vnmthdaahv qmdvklrsli
      661 cvglneqvlh lwlevlcssl qtvekwfhpw sflrspgwvq ikcelrvlck fafslsqdwe
      721 lpikreekek kplkegvqdm lvkhhlfswd idg
//
LOCUS       XP_053943419             753 aa            linear   VRT 09-MAR-2023
DEFINITION  small G protein signaling modulator 3 [Cuculus canorus].
ACCESSION   XP_053943419
VERSION     XP_053943419.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087444.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..753
                     /product="small G protein signaling modulator 3"
                     /calculated_mol_wt=86213
     Region          115..326
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     Region          486..538
                     /region_name="SH3_SGSM3"
                     /note="Src Homology 3 domain of Small G protein Signaling
                     Modulator 3; cd11813"
                     /db_xref="CDD:212747"
     Site            order(491,493,496,500,518..519,532,534..535)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212747"
     Region          516..722
                     /region_name="RUN_SGSM3"
                     /note="RUN domain found in small G protein signaling
                     modulator 3 (SGSM3) and similar proteins; cd17688"
                     /db_xref="CDD:439050"
     CDS             1..753
                     /gene="SGSM3"
                     /coded_by="XM_054087444.1:94..2355"
                     /db_xref="GeneID:104055508"
ORIGIN      
        1 msghhtpsag gpfsaltpsi wpqeilakys qkeesveqpe fhydefgfri dkedgaepns
       61 skllgvplte epqqrlkwqa hlefthnhdv gdltwdkiev tlphsdklrs lvlagiphsm
      121 rpqlwmrlsg alqkkrnsem syrdivknss ndetiaakqi ekdllrtmps nacfsnmnsi
      181 gvprlrrilr glawlypeig ycqgtgmmaa slllfleeed afwmmcaiie elvpasyfst
      241 tlmgvqtdqr vlrqlivqyl prldkllqeh dielslitlh wfltsfasvv hiklllriwd
      301 lffyegslvl fqltlgmlsm kedeliqsen sasifntlsd ipsqiedadv llreamrvag
      361 sltdvavetq rckhlaylia dqgqllnssp tvnnlskivr rrtqrrksgi tsllfgdddl
      421 ealkaknikq telvadlrea ilqvarhfqc vdpkncsidl tpdysmeshq rdhenyvacs
      481 rnrrrrakal ldferhddde lgfrkndiit iisqrdehcw vgelnglrgw fpakfveild
      541 erskeysiag ddsvtegvtd lvrgtlcpal kaifehglkk psllggachp wlfieeaasr
      601 everdfdsvy srlvlcktyr ldedgkvltp eellyravqa vnmthdaahv qmdvklrsli
      661 cvglneqvlh lwlevlcssl qtvekwfhpw sflrspgwvq ikcelrvlck fafslsqdwe
      721 lpikreekek kplkegvqdm lvkhhlfswd idg
//
LOCUS       XP_009554932             480 aa            linear   VRT 09-MAR-2023
DEFINITION  adenylosuccinate lyase [Cuculus canorus].
ACCESSION   XP_009554932
VERSION     XP_009554932.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556637.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..480
                     /product="adenylosuccinate lyase"
                     /calculated_mol_wt=54119
     Region          13..448
                     /region_name="Adenylsuccinate_lyase_2"
                     /note="Adenylsuccinate lyase (ASL)_subgroup 2; cd03302"
                     /db_xref="CDD:176471"
     Site            order(27..28,83,92,101..102,104..105,153..158,160,
                     166..167,170,173..174,180..181,197..200,203,232,234..235,
                     242,246,253,260,264,266..267,269..270,292..293,298,302,
                     305..306,308..309,312..313,316..317,321..327,331..332,334,
                     339,379,383,386,392..393,446,448)
                     /site_type="other"
                     /note="tetramer interface [polypeptide binding]"
                     /db_xref="CDD:176471"
     Site            order(82,103,155,237,291,293,298)
                     /site_type="active"
                     /db_xref="CDD:176471"
     CDS             1..480
                     /gene="ADSL"
                     /coded_by="XM_009556637.2:40..1482"
                     /db_xref="GeneID:104055509"
ORIGIN      
        1 meedalsryr splvsryasa emgfnfserk kfgtwrrlwl ylaqaekslg lpiteeqiqe
       61 meanldnidf kmaaeeekkl rhdvmahvht fahccpkaaa iihlgatscy vgdntdlivl
      121 rdgfnlllpk larvisrlad faekyadlpt lgfthyqpaq lttvgkrccl wiqdlcmdlq
      181 nlerarddlr frgvkgttgt qasflqlfeg dhskveeldr lvtakagfqr symvtgqtys
      241 rkvdievlsv laslgasihk ictdirllan lkeieepfek eqigssampy krnpmrserc
      301 cslarhlmtl vldplqtasv qwfertldds anrrvclaea fltadiilst lqniseglvv
      361 ypkvierrir qelpfmaten iimamvkagg nrqdchekir vlsqqaaavv kqeggdndfi
      421 arvradpyfs pihkqlesll dpssftgrap qqvakflkee vrpalipyqg kmggkielal
//
LOCUS       XP_053943719             766 aa            linear   VRT 09-MAR-2023
DEFINITION  cyclin-D-binding Myb-like transcription factor 1 [Cuculus canorus].
ACCESSION   XP_053943719
VERSION     XP_053943719.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087744.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..766
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..766
                     /product="cyclin-D-binding Myb-like transcription factor
                     1"
                     /calculated_mol_wt=84609
     Region          79..157
                     /region_name="DMTF1_N"
                     /note="Cyclin-D-binding Myb-like transcription factor 1
                     N-terminal; pfam20588"
                     /db_xref="CDD:466737"
     Site            order(226,254..255,257..258,260..262,264..266)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238096"
     Region          227..283
                     /region_name="Myb_DNA-bind_6"
                     /note="Myb-like DNA-binding domain; pfam13921"
                     /db_xref="CDD:372817"
     Region          273..328
                     /region_name="Myb_DNA-binding"
                     /note="Myb-like DNA-binding domain; pfam00249"
                     /db_xref="CDD:459731"
     Region          335..388
                     /region_name="SANT"
                     /note="SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding
                     domains; smart00717"
                     /db_xref="CDD:197842"
     Site            order(338,374..375,377..378,380..382,384..386)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238096"
     CDS             1..766
                     /gene="DMTF1"
                     /coded_by="XM_054087744.1:1328..3628"
                     /db_xref="GeneID:104066397"
ORIGIN      
        1 mstveeesdt vtvetvnsvt ltqdtegnli lhcpqnetde vdsedstepp hkrlclsedd
       61 qslddstpci svvavpisen dqsfevtmta ttevaedein egtvtqiqil qneqmdeisp
      121 mgneevsavs qawfttkedk dsltnkghkw kqgmwskeei dilmsniery lkargikdat
      181 eiifemskde rkdfyrtiaw glnrplfavy rrvlrmyddr nhvgkytpee ieklkelrik
      241 hgndwatiga algrsassvk drcrlmkdtc ntgkwtekee krlaevvhel tstepgdivt
      301 qgvswaavae rvgtrsekqc rskwlnylnw kqsggtewtk edeinlilri aelevsdend
      361 inwdllaegw ssvrspqwlr skwwtikrqi anhkdvsfpv likglkqlhe nqknnpghql
      421 senksgsglp nsnsssgvqh vqirvarlee sagntpspva alqipvqith vsstdspaat
      481 vdsetitlns gtlqtfeilp sfhlqptgtp gtyllqtsss qglpltltts ptmtltaaaa
      541 paspeqiivh alspehllnt sdnvtvqcht psviirtvaa edisssvtqa elsvdsdiqs
      601 adltdphdtl etntfpddih qsklsdeeps ayneddaskf nsrnsselmd gvmvrtgeei
      661 sdaslkqeds hsdlpsayvt eelgsptiee qvdqptidde tvlivpsshg fiqatddids
      721 esvlplttlt dpilqhhgdg shiigsslgs pdsedskdve dlvsch
//
LOCUS       XP_053943780             766 aa            linear   VRT 09-MAR-2023
DEFINITION  cyclin-D-binding Myb-like transcription factor 1 [Cuculus canorus].
ACCESSION   XP_053943780
VERSION     XP_053943780.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087805.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..766
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..766
                     /product="cyclin-D-binding Myb-like transcription factor
                     1"
                     /calculated_mol_wt=84609
     Region          79..157
                     /region_name="DMTF1_N"
                     /note="Cyclin-D-binding Myb-like transcription factor 1
                     N-terminal; pfam20588"
                     /db_xref="CDD:466737"
     Site            order(226,254..255,257..258,260..262,264..266)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238096"
     Region          227..283
                     /region_name="Myb_DNA-bind_6"
                     /note="Myb-like DNA-binding domain; pfam13921"
                     /db_xref="CDD:372817"
     Region          273..328
                     /region_name="Myb_DNA-binding"
                     /note="Myb-like DNA-binding domain; pfam00249"
                     /db_xref="CDD:459731"
     Region          335..388
                     /region_name="SANT"
                     /note="SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding
                     domains; smart00717"
                     /db_xref="CDD:197842"
     Site            order(338,374..375,377..378,380..382,384..386)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238096"
     CDS             1..766
                     /gene="DMTF1"
                     /coded_by="XM_054087805.1:158..2458"
                     /db_xref="GeneID:104066397"
ORIGIN      
        1 mstveeesdt vtvetvnsvt ltqdtegnli lhcpqnetde vdsedstepp hkrlclsedd
       61 qslddstpci svvavpisen dqsfevtmta ttevaedein egtvtqiqil qneqmdeisp
      121 mgneevsavs qawfttkedk dsltnkghkw kqgmwskeei dilmsniery lkargikdat
      181 eiifemskde rkdfyrtiaw glnrplfavy rrvlrmyddr nhvgkytpee ieklkelrik
      241 hgndwatiga algrsassvk drcrlmkdtc ntgkwtekee krlaevvhel tstepgdivt
      301 qgvswaavae rvgtrsekqc rskwlnylnw kqsggtewtk edeinlilri aelevsdend
      361 inwdllaegw ssvrspqwlr skwwtikrqi anhkdvsfpv likglkqlhe nqknnpghql
      421 senksgsglp nsnsssgvqh vqirvarlee sagntpspva alqipvqith vsstdspaat
      481 vdsetitlns gtlqtfeilp sfhlqptgtp gtyllqtsss qglpltltts ptmtltaaaa
      541 paspeqiivh alspehllnt sdnvtvqcht psviirtvaa edisssvtqa elsvdsdiqs
      601 adltdphdtl etntfpddih qsklsdeeps ayneddaskf nsrnsselmd gvmvrtgeei
      661 sdaslkqeds hsdlpsayvt eelgsptiee qvdqptidde tvlivpsshg fiqatddids
      721 esvlplttlt dpilqhhgdg shiigsslgs pdsedskdve dlvsch
//
LOCUS       XP_009567026             130 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: meiosis expressed gene 1 protein homolog
            [Cuculus canorus].
ACCESSION   XP_009567026
VERSION     XP_009567026.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568731.2
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567026.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..130
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..130
                     /product="LOW QUALITY PROTEIN: meiosis expressed gene 1
                     protein homolog"
                     /calculated_mol_wt=15262
     Region          53..128
                     /region_name="Meiosis_expr"
                     /note="Meiosis-expressed; pfam15163"
                     /db_xref="CDD:464539"
     CDS             1..130
                     /gene="MEIG1"
                     /coded_by="XM_009568731.2:1..393"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /db_xref="GeneID:104066157"
ORIGIN      
        1 mvtqevppms icleeahxde fitsykevpn tsdvkksevs gvmpkadikp ksvhrakews
       61 gevenlyrfq lagyrdetey kqvnqvdmve rwpetgfvkk lqrrdntfyy ydkqrecede
      121 kvhkvkiyvy
//
LOCUS       XP_009567300             125 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 243 [Cuculus canorus].
ACCESSION   XP_009567300
VERSION     XP_009567300.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009569005.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567300.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..125
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..125
                     /product="transmembrane protein 243"
                     /calculated_mol_wt=13840
     Region          8..125
                     /region_name="DUF2678"
                     /note="Protein of unknown function (DUF2678); pfam10856"
                     /db_xref="CDD:463191"
     CDS             1..125
                     /gene="TMEM243"
                     /coded_by="XM_009569005.2:57..434"
                     /db_xref="GeneID:104066408"
ORIGIN      
        1 mrarprameg faargygtgg pdnrplfget sardrvinlv vggltslllv vtlisafvfp
       61 qlppkpvnvf fafcislcci sagiliywyr qgdlepkfrn liyyilfsiv mlcicanlyf
      121 hevgk
//
LOCUS       XP_053944104            1041 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription intermediary factor 1-alpha [Cuculus canorus].
ACCESSION   XP_053944104
VERSION     XP_053944104.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088129.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1041
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1041
                     /product="transcription intermediary factor 1-alpha"
                     /calculated_mol_wt=115315
     Region          50..134
                     /region_name="RING_Ubox"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; cl17238"
                     /db_xref="CDD:473075"
     Site            order(53,56,70,72,75,78,127,130)
                     /site_type="other"
                     /note="cross-brace motif"
                     /db_xref="CDD:438111"
     Region          161..205
                     /region_name="Bbox1_TIF1a_C-VI"
                     /note="B-box-type 1 zinc finger found in transcription
                     intermediary factor 1-alpha (TIF1-alpha); cd19845"
                     /db_xref="CDD:380903"
     Region          218..274
                     /region_name="Bbox2_TIF1a_C-VI"
                     /note="B-box-type 2 zinc finger found in transcription
                     intermediary factor 1-alpha (TIF1-alpha); cd19828"
                     /db_xref="CDD:380886"
     Region          266..392
                     /region_name="BBC"
                     /note="B-Box C-terminal domain; smart00502"
                     /db_xref="CDD:128778"
     Site            order(270,273..274,276..278,281,284,299..300,303,305..306,
                     309..310,313,320..321,324,327..328,331..332,335,345..346,
                     349,353,356..357,360..361,363..364,372,375..376,379,
                     382..383)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467844"
     Region          819..864
                     /region_name="PHD_TIF1gamma"
                     /note="PHD finger found in transcriptional intermediary
                     factor 1 gamma (TIF1gamma); cd15624"
                     /db_xref="CDD:277094"
     Site            order(819,824..825,828..833,840,853..854)
                     /site_type="other"
                     /note="histone H3 binding site [polypeptide binding]"
                     /db_xref="CDD:277094"
     Region          891..998
                     /region_name="Bromo_tif1_like"
                     /note="Bromodomain; tif1_like subfamily. Tif1
                     (transcription intermediary factor 1) is a member of the
                     tripartite motif (TRIM) protein family, which is
                     characterized by a particular domain architecture. It
                     functions by recruiting coactivators and/or...; cd05502"
                     /db_xref="CDD:99934"
     Site            order(919,923,926,967,971,977)
                     /site_type="other"
                     /note="putative acetyllysine binding site [chemical
                     binding]"
                     /db_xref="CDD:99934"
     CDS             1..1041
                     /gene="TRIM24"
                     /coded_by="XM_054088129.1:107..3232"
                     /db_xref="GeneID:104058966"
ORIGIN      
        1 meeaaagaaa aavgcapcps drtslsgene aesrqgpser ggeaaplnll dtcgvcgqpi
       61 qsrrpkllpc lhsvclrclp qperylmlpp aapslpprdp ptaaapsspl sapplpphct
      121 pvgvircpic gqecaerhii dnffvkdtte vpsstveksn qvctscedna eahgfcvecv
      181 ewlcktcira hqrvkftkdh tvrqkeevsp eavgvtsqrp vfcpyhkkeq lklycetcdk
      241 ltcrdcqlle hkehryqfie eafqnqkvii etlitklmek tkyikytgkq iqnrilevnq
      301 nqkqveqdik vaiftlmvei nkkgkallhq letlakehrm kllqqqqeva slskqlehvm
      361 nfskwavssg sstallyskr lityrlryll rarydaspvt nntiqfhcdp sfwaqnifnl
      421 gslviedket pphvpknpvv eanlqppgsl psnqlskfpt qislaqlrlq hmqqqvmaqr
      481 qqaqrragpv alpnprmpga mqqppasshq apprlihfqn hspksngsal paqqmrfpqn
      541 qnlprqaikp nplqmaflaq qaikqwqigs gqnstalsaa gstsstpssp titsavgcdg
      601 ktygppmidl sspvgssynl pslpdidcsg nitldsvvrk dgtaeqnqpk ppsnrtvqsp
      661 nssvpspgls ggvsvtnihp pirspsassv gsressgsss kppgadsthk vpvvmlepir
      721 ikqessapne nfdfpivivk qetdeeprpr nttfsrsilt sllldnnsas deavlrtdap
      781 dstddqpgtl qntssgktgw igpshigegr keddpnedwc avcqnggell ccekcpkvfh
      841 lschvptlms fpsgewictf crdlskpeve ydcdrpthvs eerkledtvg lapidrrkce
      901 rlllylyche mslafqdpvp ptvpdyykii kkpmdlstik krlevtnsfy tkpedfvadf
      961 rlifqncaef nepdsevada gmkleayfee llanlypdrk fpvqlncqne kdnseltdds
     1021 dddfvqprkk rlkgedrqll k
//
LOCUS       XP_009558821             844 aa            linear   VRT 09-MAR-2023
DEFINITION  V-type proton ATPase 116 kDa subunit a 4 [Cuculus canorus].
ACCESSION   XP_009558821
VERSION     XP_009558821.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560526.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009558821.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..844
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..844
                     /product="V-type proton ATPase 116 kDa subunit a 4"
                     /calculated_mol_wt=96526
     Region          27..834
                     /region_name="V_ATPase_I"
                     /note="V-type ATPase 116kDa subunit family; pfam01496"
                     /db_xref="CDD:460232"
     CDS             1..844
                     /gene="ATP6V0A4"
                     /coded_by="XM_009560526.2:285..2819"
                     /db_xref="GeneID:104058936"
ORIGIN      
        1 mcsvfrseem slmqlflqve aayccvaelg elglvqfrdl nvnvnsfqrk fvnevrrces
       61 lerilrflen emednvetvk lekypetllp remiymetvl ekleaellea nqnqqtlkqn
      121 fleltelkhl lkktqdffea etnlpddffs edtsgllelr stpaaaaakl gftagvikre
      181 rmipferllw racrgniylr ytemdtpled pvtreevkkn vfiifyqgeq lkqkikkicd
      241 gfratvypcp esaaerrdml dgvntriedl ntvmtqtesh rqrllheaaa nlwswgikvk
      301 kikaiyhiln ccnidvtqqc viaeiwfpva dtsrikkalh qgmkrsgsti apiltaihtr
      361 mapptfnrtn kftagfqniv daygvgnyre mnpapytiit fpflfavmfg dcghgavmlg
      421 falwmvinek sllaqkstne iwntffsgry lillmgifsm ytgfiyndcf sksfnifgss
      481 whvipmfrns twnkevllen tvlqldpavp gvysgnpypf gidpiwnias nkltfsnsyk
      541 mkmsvligiv hmifgvilsl fnhiyfkkyi niilqfipem ifivslfgyl vfmiifkwch
      601 fdvhssqsap silihfinmf lfnysdtsna plylhqkevq sflvifalia vpwmllikpl
      661 vlranhqkaq rmirsqdvsg nlggenevdv petnhskkas qgdhsgghgg henddeefnf
      721 gdifvhqaih tieyclgcis ntasylrlwa lslahaqlse vlwtmvmhng lnnssfsgli
      781 ivfiifaafa vltvaillim eglsaflhal rlhwvefqnk fyvgagykfs pfsfkhiidg
      841 taee
//
LOCUS       XP_053944321             506 aa            linear   VRT 09-MAR-2023
DEFINITION  putative transporter SVOPL isoform X1 [Cuculus canorus].
ACCESSION   XP_053944321
VERSION     XP_053944321.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088346.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..506
                     /product="putative transporter SVOPL isoform X1"
                     /calculated_mol_wt=56310
     Region          49..>392
                     /region_name="MFS"
                     /note="Major Facilitator Superfamily; cl28910"
                     /db_xref="CDD:475125"
     CDS             1..506
                     /gene="SVOPL"
                     /coded_by="XM_054088346.1:2907..4427"
                     /db_xref="GeneID:104058965"
ORIGIN      
        1 matapkeaen avgleeihme rqeppkgqkt ftveeaveti gfgrfhivlf limgstgvae
       61 ameimliavv splircewql qdwqvalvtt mvffgymvfs ivlglladry grwkilllsf
      121 lwaayfsllt sfapsyiwfv flramvgggv sghaqgliik teflptqyrg ymlplsqvfw
      181 lagslliigl asvvnptigw rwliriasip gillilvfkf ipesarynis tgnvaaamat
      241 lqkiakinga avpegvlmep vkekrgrfkd lihpkylrts lqiwiiwlgi afayygvila
      301 stellerdli cgsarppvqd ssdnseesrs rcychlfgpt ayqtmmistv geialnplni
      361 lginflgrrl tlcitmgfta lfflllnict srhdrvslha arlgfcklqh hlhlhsrgls
      421 hhnaspgdgn krvtvpcwsy ggpiyitssy ecffpwgpvs fllcvcglcn lctyaahrdq
      481 gqgtsglyfh srsscvpkcy lensrl
//
LOCUS       XP_053944396             506 aa            linear   VRT 09-MAR-2023
DEFINITION  putative transporter SVOPL isoform X1 [Cuculus canorus].
ACCESSION   XP_053944396
VERSION     XP_053944396.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088421.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..506
                     /product="putative transporter SVOPL isoform X1"
                     /calculated_mol_wt=56310
     Region          49..>392
                     /region_name="MFS"
                     /note="Major Facilitator Superfamily; cl28910"
                     /db_xref="CDD:475125"
     CDS             1..506
                     /gene="SVOPL"
                     /coded_by="XM_054088421.1:1114..2634"
                     /db_xref="GeneID:104058965"
ORIGIN      
        1 matapkeaen avgleeihme rqeppkgqkt ftveeaveti gfgrfhivlf limgstgvae
       61 ameimliavv splircewql qdwqvalvtt mvffgymvfs ivlglladry grwkilllsf
      121 lwaayfsllt sfapsyiwfv flramvgggv sghaqgliik teflptqyrg ymlplsqvfw
      181 lagslliigl asvvnptigw rwliriasip gillilvfkf ipesarynis tgnvaaamat
      241 lqkiakinga avpegvlmep vkekrgrfkd lihpkylrts lqiwiiwlgi afayygvila
      301 stellerdli cgsarppvqd ssdnseesrs rcychlfgpt ayqtmmistv geialnplni
      361 lginflgrrl tlcitmgfta lfflllnict srhdrvslha arlgfcklqh hlhlhsrgls
      421 hhnaspgdgn krvtvpcwsy ggpiyitssy ecffpwgpvs fllcvcglcn lctyaahrdq
      481 gqgtsglyfh srsscvpkcy lensrl
//
LOCUS       XP_053944474             502 aa            linear   VRT 09-MAR-2023
DEFINITION  putative transporter SVOPL isoform X2 [Cuculus canorus].
ACCESSION   XP_053944474
VERSION     XP_053944474.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088499.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..502
                     /product="putative transporter SVOPL isoform X2"
                     /calculated_mol_wt=55058
     Region          49..478
                     /region_name="MFS_SVOPL"
                     /note="Synaptic vesicle 2 (SV2)-related protein-like
                     (SVOPL) of the Major Facilitator Superfamily; cd17442"
                     /db_xref="CDD:341000"
     Site            order(60..61,64..65,68,100,150..151,153..155,158,177,
                     180..181,184,287,290..291,294..296,299,352,356,405..406,
                     410,414,430,433..434,437..438,441)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:341000"
     CDS             1..502
                     /gene="SVOPL"
                     /coded_by="XM_054088499.1:2907..4415"
                     /db_xref="GeneID:104058965"
ORIGIN      
        1 matapkeaen avgleeihme rqeppkgqkt ftveeaveti gfgrfhivlf limgstgvae
       61 ameimliavv splircewql qdwqvalvtt mvffgymvfs ivlglladry grwkilllsf
      121 lwaayfsllt sfapsyiwfv flramvgggv sghaqgliik teflptqyrg ymlplsqvfw
      181 lagslliigl asvvnptigw rwliriasip gillilvfkf ipesarynis tgnvaaamat
      241 lqkiakinga avpegvlmep vkekrgrfkd lihpkylrts lqiwiiwlgi afayygvila
      301 stellerdli cgsarppvqd ssdnseesrs rcychlfgpt ayqtmmistv geialnplni
      361 lginflgrrl tlcitmgfta lfflllnict sstgmigflf mlralvsanf ntiyiytaev
      421 ypttmralgm gisgslcrvg amvapfisqv lmsasflgal clfssvcvvc aisaltlpie
      481 tkgralqvci stpgapvyln at
//
LOCUS       XP_053944555             493 aa            linear   VRT 09-MAR-2023
DEFINITION  putative transporter SVOPL isoform X3 [Cuculus canorus].
ACCESSION   XP_053944555
VERSION     XP_053944555.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088580.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..493
                     /product="putative transporter SVOPL isoform X3"
                     /calculated_mol_wt=54671
     Region          49..>392
                     /region_name="MFS"
                     /note="Major Facilitator Superfamily; cl28910"
                     /db_xref="CDD:475125"
     CDS             1..493
                     /gene="SVOPL"
                     /coded_by="XM_054088580.1:2907..4388"
                     /db_xref="GeneID:104058965"
ORIGIN      
        1 matapkeaen avgleeihme rqeppkgqkt ftveeaveti gfgrfhivlf limgstgvae
       61 ameimliavv splircewql qdwqvalvtt mvffgymvfs ivlglladry grwkilllsf
      121 lwaayfsllt sfapsyiwfv flramvgggv sghaqgliik teflptqyrg ymlplsqvfw
      181 lagslliigl asvvnptigw rwliriasip gillilvfkf ipesarynis tgnvaaamat
      241 lqkiakinga avpegvlmep vkekrgrfkd lihpkylrts lqiwiiwlgi afayygvila
      301 stellerdli cgsarppvqd ssdnseesrs rcychlfgpt ayqtmmistv geialnplni
      361 lginflgrrl tlcitmgfta lfflllnict srhdrvslha arlgfcklqh hlhlhsrgls
      421 hhnaspgdgn krvtvpcwsy ggpiyitssy ecffpwgpvs fllcvcglcn lctyaahrdq
      481 gqgtsasemk vgv
//
LOCUS       XP_053944612             490 aa            linear   VRT 09-MAR-2023
DEFINITION  putative transporter SVOPL isoform X4 [Cuculus canorus].
ACCESSION   XP_053944612
VERSION     XP_053944612.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088637.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..490
                     /product="putative transporter SVOPL isoform X4"
                     /calculated_mol_wt=53925
     Region          49..478
                     /region_name="MFS_SVOPL"
                     /note="Synaptic vesicle 2 (SV2)-related protein-like
                     (SVOPL) of the Major Facilitator Superfamily; cd17442"
                     /db_xref="CDD:341000"
     Site            order(60..61,64..65,68,100,150..151,153..155,158,177,
                     180..181,184,287,290..291,294..296,299,352,356,405..406,
                     410,414,430,433..434,437..438,441)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:341000"
     CDS             1..490
                     /gene="SVOPL"
                     /coded_by="XM_054088637.1:2907..4379"
                     /db_xref="GeneID:104058965"
ORIGIN      
        1 matapkeaen avgleeihme rqeppkgqkt ftveeaveti gfgrfhivlf limgstgvae
       61 ameimliavv splircewql qdwqvalvtt mvffgymvfs ivlglladry grwkilllsf
      121 lwaayfsllt sfapsyiwfv flramvgggv sghaqgliik teflptqyrg ymlplsqvfw
      181 lagslliigl asvvnptigw rwliriasip gillilvfkf ipesarynis tgnvaaamat
      241 lqkiakinga avpegvlmep vkekrgrfkd lihpkylrts lqiwiiwlgi afayygvila
      301 stellerdli cgsarppvqd ssdnseesrs rcychlfgpt ayqtmmistv geialnplni
      361 lginflgrrl tlcitmgfta lfflllnict sstgmigflf mlralvsanf ntiyiytaev
      421 ypttmralgm gisgslcrvg amvapfisqv lmsasflgal clfssvcvvc aisaltlpie
      481 tkgralqqvk
//
LOCUS       XP_053944680             416 aa            linear   VRT 09-MAR-2023
DEFINITION  putative transporter SVOPL isoform X5 [Cuculus canorus].
ACCESSION   XP_053944680
VERSION     XP_053944680.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088705.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..416
                     /product="putative transporter SVOPL isoform X5"
                     /calculated_mol_wt=46315
     Region          1..>302
                     /region_name="MFS"
                     /note="Major Facilitator Superfamily; cl28910"
                     /db_xref="CDD:475125"
     CDS             1..416
                     /gene="SVOPL"
                     /coded_by="XM_054088705.1:289..1539"
                     /db_xref="GeneID:104058965"
ORIGIN      
        1 mvffgymvfs ivlglladry grwkilllsf lwaayfsllt sfapsyiwfv flramvgggv
       61 sghaqgliik teflptqyrg ymlplsqvfw lagslliigl asvvnptigw rwliriasip
      121 gillilvfkf ipesarynis tgnvaaamat lqkiakinga avpegvlmep vkekrgrfkd
      181 lihpkylrts lqiwiiwlgi afayygvila stellerdli cgsarppvqd ssdnseesrs
      241 rcychlfgpt ayqtmmistv geialnplni lginflgrrl tlcitmgfta lfflllnict
      301 srhdrvslha arlgfcklqh hlhlhsrgls hhnaspgdgn krvtvpcwsy ggpiyitssy
      361 ecffpwgpvs fllcvcglcn lctyaahrdq gqgtsglyfh srsscvpkcy lensrl
//
LOCUS       XP_053944737             416 aa            linear   VRT 09-MAR-2023
DEFINITION  putative transporter SVOPL isoform X5 [Cuculus canorus].
ACCESSION   XP_053944737
VERSION     XP_053944737.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088762.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..416
                     /product="putative transporter SVOPL isoform X5"
                     /calculated_mol_wt=46315
     Region          1..>302
                     /region_name="MFS"
                     /note="Major Facilitator Superfamily; cl28910"
                     /db_xref="CDD:475125"
     CDS             1..416
                     /gene="SVOPL"
                     /coded_by="XM_054088762.1:304..1554"
                     /db_xref="GeneID:104058965"
ORIGIN      
        1 mvffgymvfs ivlglladry grwkilllsf lwaayfsllt sfapsyiwfv flramvgggv
       61 sghaqgliik teflptqyrg ymlplsqvfw lagslliigl asvvnptigw rwliriasip
      121 gillilvfkf ipesarynis tgnvaaamat lqkiakinga avpegvlmep vkekrgrfkd
      181 lihpkylrts lqiwiiwlgi afayygvila stellerdli cgsarppvqd ssdnseesrs
      241 rcychlfgpt ayqtmmistv geialnplni lginflgrrl tlcitmgfta lfflllnict
      301 srhdrvslha arlgfcklqh hlhlhsrgls hhnaspgdgn krvtvpcwsy ggpiyitssy
      361 ecffpwgpvs fllcvcglcn lctyaahrdq gqgtsglyfh srsscvpkcy lensrl
//
LOCUS       XP_053944854             191 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology domain-containing family B member 1 [Cuculus
            canorus].
ACCESSION   XP_053944854
VERSION     XP_053944854.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088879.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..191
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..191
                     /product="pleckstrin homology domain-containing family B
                     member 1"
                     /calculated_mol_wt=21556
     Region          1..108
                     /region_name="PH_evt"
                     /note="Evectin Pleckstrin homology (PH) domain; cd13265"
                     /db_xref="CDD:270085"
     Site            order(11,13..18,20,34,45,87)
                     /site_type="other"
                     /note="phosophoserine binding site [chemical binding]"
                     /db_xref="CDD:270085"
     CDS             1..191
                     /gene="PLEKHB1"
                     /coded_by="XM_054088879.1:122..697"
                     /db_xref="GeneID:104064114"
ORIGIN      
        1 malvksgwlw rqssilrrwk rnwfvlyldg sliyyhdetq rdmdgrihik yscrdvrtgr
       61 ecgdvqppeg ksrdclltvv lrdgskttlc aesqddaiaw kmavleakst pvhvydpydd
      121 dyyqtvplds hqtayissgh yghqygapgv thvivredpy rvsgdqmalg llagaatgaa
      181 lgsfmwmpcw f
//
LOCUS       XP_053944917             191 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology domain-containing family B member 1 [Cuculus
            canorus].
ACCESSION   XP_053944917
VERSION     XP_053944917.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088942.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..191
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..191
                     /product="pleckstrin homology domain-containing family B
                     member 1"
                     /calculated_mol_wt=21556
     Region          1..108
                     /region_name="PH_evt"
                     /note="Evectin Pleckstrin homology (PH) domain; cd13265"
                     /db_xref="CDD:270085"
     Site            order(11,13..18,20,34,45,87)
                     /site_type="other"
                     /note="phosophoserine binding site [chemical binding]"
                     /db_xref="CDD:270085"
     CDS             1..191
                     /gene="PLEKHB1"
                     /coded_by="XM_054088942.1:233..808"
                     /db_xref="GeneID:104064114"
ORIGIN      
        1 malvksgwlw rqssilrrwk rnwfvlyldg sliyyhdetq rdmdgrihik yscrdvrtgr
       61 ecgdvqppeg ksrdclltvv lrdgskttlc aesqddaiaw kmavleakst pvhvydpydd
      121 dyyqtvplds hqtayissgh yghqygapgv thvivredpy rvsgdqmalg llagaatgaa
      181 lgsfmwmpcw f
//
LOCUS       XP_053905541             191 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology domain-containing family B member 1 [Cuculus
            canorus].
ACCESSION   XP_053905541
VERSION     XP_053905541.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049566.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..191
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..191
                     /product="pleckstrin homology domain-containing family B
                     member 1"
                     /calculated_mol_wt=21556
     Region          1..108
                     /region_name="PH_evt"
                     /note="Evectin Pleckstrin homology (PH) domain; cd13265"
                     /db_xref="CDD:270085"
     Site            order(11,13..18,20,34,45,87)
                     /site_type="other"
                     /note="phosophoserine binding site [chemical binding]"
                     /db_xref="CDD:270085"
     CDS             1..191
                     /gene="PLEKHB1"
                     /coded_by="XM_054049566.1:236..811"
                     /db_xref="GeneID:104064114"
ORIGIN      
        1 malvksgwlw rqssilrrwk rnwfvlyldg sliyyhdetq rdmdgrihik yscrdvrtgr
       61 ecgdvqppeg ksrdclltvv lrdgskttlc aesqddaiaw kmavleakst pvhvydpydd
      121 dyyqtvplds hqtayissgh yghqygapgv thvivredpy rvsgdqmalg llagaatgaa
      181 lgsfmwmpcw f
//
LOCUS       XP_009564703             208 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related protein Rab-6A isoform X1 [Cuculus canorus].
ACCESSION   XP_009564703
VERSION     XP_009564703.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566408.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564703.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..208
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..208
                     /product="ras-related protein Rab-6A isoform X1"
                     /calculated_mol_wt=23404
     Region          14..174
                     /region_name="Rab6"
                     /note="Rab GTPase family 6 (Rab6); cd01861"
                     /db_xref="CDD:206654"
     Site            14..15
                     /site_type="other"
                     /note="Rab subfamily motif 1 (RabSF1)"
                     /db_xref="CDD:206654"
     Site            20..27
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206654"
     Site            order(22..28,42,44,126..127,129,156..158)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206654"
     Site            order(28..39,43..44)
                     /site_type="other"
                     /note="Rab subfamily motif 2 (RabSF2)"
                     /db_xref="CDD:206654"
     Site            order(38,43..51)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206654"
     Site            order(43,47..54,61,63)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206654"
     Site            45
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206654"
     Site            order(46,48..50,65,67,74..75,78,82,84..87,174)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206654"
     Site            order(46..47,49,67..68,75,77,79..81)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206654"
     Site            46..50
                     /site_type="other"
                     /note="Rab family motif 1 (RabF1)"
                     /db_xref="CDD:206654"
     Site            63..67
                     /site_type="other"
                     /note="Rab family motif 2 (RabF2)"
                     /db_xref="CDD:206654"
     Site            68..71
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206654"
     Site            order(71,73..83)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206654"
     Site            74..79
                     /site_type="other"
                     /note="Rab family motif 3 (RabF3)"
                     /db_xref="CDD:206654"
     Site            82..86
                     /site_type="other"
                     /note="Rab family motif 4 (RabF4)"
                     /db_xref="CDD:206654"
     Site            91..96
                     /site_type="other"
                     /note="Rab family motif 5 (RabF5)"
                     /db_xref="CDD:206654"
     Site            119..123
                     /site_type="other"
                     /note="Rab subfamily motif 3 (RabSF3)"
                     /db_xref="CDD:206654"
     Site            126..129
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206654"
     Site            156..158
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206654"
     Site            172..174
                     /site_type="other"
                     /note="Rab subfamily motif 4 (RabSF4)"
                     /db_xref="CDD:206654"
     CDS             1..208
                     /gene="RAB6A"
                     /coded_by="XM_009566408.2:232..858"
                     /db_xref="GeneID:104064113"
ORIGIN      
        1 msaggdfgnp lrkfklvflg eqsvgktsli trfmydsfdn tyqatigidf lsktmyledr
       61 tvrlqlwdta gqerfrslip syirdstvav vvyditnvns fqqttkwidd vrtergsdvi
      121 imlvgnktdl adkrqvsiee gerkakelnv mfietsakag ynvkqlfrrv aaalpgmest
      181 qdksredmid iklekpqeqp vseggcsc
//
LOCUS       XP_009564701             208 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related protein Rab-6A isoform X2 [Cuculus canorus].
ACCESSION   XP_009564701
VERSION     XP_009564701.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566406.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564701.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..208
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..208
                     /product="ras-related protein Rab-6A isoform X2"
                     /calculated_mol_wt=23360
     Region          14..174
                     /region_name="Rab6"
                     /note="Rab GTPase family 6 (Rab6); cd01861"
                     /db_xref="CDD:206654"
     Site            14..15
                     /site_type="other"
                     /note="Rab subfamily motif 1 (RabSF1)"
                     /db_xref="CDD:206654"
     Site            20..27
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206654"
     Site            order(22..28,42,44,126..127,129,156..158)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206654"
     Site            order(28..39,43..44)
                     /site_type="other"
                     /note="Rab subfamily motif 2 (RabSF2)"
                     /db_xref="CDD:206654"
     Site            order(38,43..51)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206654"
     Site            order(43,47..54,61,63)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206654"
     Site            45
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206654"
     Site            order(46,48..50,65,67,74..75,78,82,84..87,174)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206654"
     Site            order(46..47,49,67..68,75,77,79..81)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206654"
     Site            46..50
                     /site_type="other"
                     /note="Rab family motif 1 (RabF1)"
                     /db_xref="CDD:206654"
     Site            63..67
                     /site_type="other"
                     /note="Rab family motif 2 (RabF2)"
                     /db_xref="CDD:206654"
     Site            68..71
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206654"
     Site            order(71,73..83)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206654"
     Site            74..79
                     /site_type="other"
                     /note="Rab family motif 3 (RabF3)"
                     /db_xref="CDD:206654"
     Site            82..86
                     /site_type="other"
                     /note="Rab family motif 4 (RabF4)"
                     /db_xref="CDD:206654"
     Site            91..96
                     /site_type="other"
                     /note="Rab family motif 5 (RabF5)"
                     /db_xref="CDD:206654"
     Site            119..123
                     /site_type="other"
                     /note="Rab subfamily motif 3 (RabSF3)"
                     /db_xref="CDD:206654"
     Site            126..129
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206654"
     Site            156..158
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206654"
     Site            172..174
                     /site_type="other"
                     /note="Rab subfamily motif 4 (RabSF4)"
                     /db_xref="CDD:206654"
     CDS             1..208
                     /gene="RAB6A"
                     /coded_by="XM_009566406.2:234..860"
                     /db_xref="GeneID:104064113"
ORIGIN      
        1 msaggdfgnp lrkfklvflg eqsvgktsli trfmydsfdn tyqatigidf lsktmyledr
       61 tirlqlwdta gqerfrslip syirdsaaav vvyditnvns fqqttkwidd vrtergsdvi
      121 imlvgnktdl adkrqvsiee gerkakelnv mfietsakag ynvkqlfrrv aaalpgmest
      181 qdksredmid iklekpqeqp vseggcsc
//
LOCUS       XP_053905813             247 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related protein Rab-6A isoform X3 [Cuculus canorus].
ACCESSION   XP_053905813
VERSION     XP_053905813.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049838.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..247
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..247
                     /product="ras-related protein Rab-6A isoform X3"
                     /calculated_mol_wt=27930
     Region          14..213
                     /region_name="Rab6"
                     /note="Rab GTPase family 6 (Rab6); cd01861"
                     /db_xref="CDD:206654"
     Site            14..15
                     /site_type="other"
                     /note="Rab subfamily motif 1 (RabSF1)"
                     /db_xref="CDD:206654"
     Site            20..27
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206654"
     Site            order(22..28,42,44,165..166,168,195..197)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206654"
     Site            order(28..39,43..44)
                     /site_type="other"
                     /note="Rab subfamily motif 2 (RabSF2)"
                     /db_xref="CDD:206654"
     Site            order(38,43..51)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206654"
     Site            order(43,47..54,61,63)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206654"
     Site            45
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206654"
     Site            order(46,48..50,65,67,113..114,117,121,123..126,213)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206654"
     Site            order(46..47,49,67..68,114,116,118..120)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206654"
     Site            46..50
                     /site_type="other"
                     /note="Rab family motif 1 (RabF1)"
                     /db_xref="CDD:206654"
     Site            63..67
                     /site_type="other"
                     /note="Rab family motif 2 (RabF2)"
                     /db_xref="CDD:206654"
     Site            order(68..70,110)
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206654"
     Site            order(110,112..122)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206654"
     Site            113..118
                     /site_type="other"
                     /note="Rab family motif 3 (RabF3)"
                     /db_xref="CDD:206654"
     Site            121..125
                     /site_type="other"
                     /note="Rab family motif 4 (RabF4)"
                     /db_xref="CDD:206654"
     Site            130..135
                     /site_type="other"
                     /note="Rab family motif 5 (RabF5)"
                     /db_xref="CDD:206654"
     Site            158..162
                     /site_type="other"
                     /note="Rab subfamily motif 3 (RabSF3)"
                     /db_xref="CDD:206654"
     Site            165..168
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206654"
     Site            195..197
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206654"
     Site            211..213
                     /site_type="other"
                     /note="Rab subfamily motif 4 (RabSF4)"
                     /db_xref="CDD:206654"
     CDS             1..247
                     /gene="RAB6A"
                     /coded_by="XM_054049838.1:235..978"
                     /db_xref="GeneID:104064113"
ORIGIN      
        1 msaggdfgnp lrkfklvflg eqsvgktsli trfmydsfdn tyqatigidf lsktmyledr
       61 tirlqlwdta gqerfrslip syirdsaaav vvyditsryi vrlqlwdtag qerfrslips
      121 yirdstvavv vyditnvnsf qqttkwiddv rtergsdvii mlvgnktdla dkrqvsieeg
      181 erkakelnvm fietsakagy nvkqlfrrva aalpgmestq dksredmidi klekpqeqpv
      241 seggcsc
//
LOCUS       XP_053906011             706 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich repeat and calponin homology domain-containing protein
            1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053906011
VERSION     XP_053906011.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050036.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..706
                     /product="leucine-rich repeat and calponin homology
                     domain-containing protein 1 isoform X1"
                     /calculated_mol_wt=78987
     Region          <39..>209
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          39..62
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          63..85
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          86..108
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          109..124
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          131..153
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          154..176
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          177..197
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          199..221
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          222..241
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          586..696
                     /region_name="CH_LRCH2"
                     /note="calponin homology (CH) domain found in leucine-rich
                     repeat and calponin homology domain-containing protein 2;
                     cd21271"
                     /db_xref="CDD:409120"
     Site            order(591,595,650,652..653,656..657,659,669..677,683,
                     685..686,688..689,692..693,696)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409120"
     CDS             1..706
                     /gene="LRCH1"
                     /coded_by="XM_054050036.1:104..2224"
                     /db_xref="GeneID:104056525"
ORIGIN      
        1 maalggepqp fpgaalalpa plnrgleral eeaahsggln lsgrkmkefp rsaaalshdl
       61 sdtvradlsk nrltevptel chfvsletln lyhncikiip daivnlqmlt ylnlsrnqls
      121 slpaclcglp lkvliasnnk lgslpeeigq lkqlmeldvs cneitalpqq igqlkslkel
      181 nvrrnylevl pqelvqlplv kfdfscnkvl vipicfrkmv qlqvlllenn plqsppaqic
      241 tkgkvhifky lavqacqikt adslylnaie qqhlpqpvee siddiypskk dsdsgvgsdn
      301 gdkrlsatep sdedtisfnv pmsdimeedh vvkedsghha nsrkvdfhqg sshlivndks
      361 retgnefdes dtlttefmsy iksraaecde llrieedaqw qtdeimnlse eqaldiamie
      421 qlreavdllq dpnsgqmqme msslgqrent ekelefqrrr elimekakse vrtceqgekw
      481 slsqndiivw ntsgqtsyne nkgksptmsp ttnatipfgl kprsadpsls lppisfntlt
      541 qaqtwdnfsy sipsegdsdn vflrpqrnle sidpqftirr kmeqmreere lveqlrenie
      601 trlkiclped lgsalmdgvv lchlvnhvrp rsvgsihvps pavpklsmak crrnvenfld
      661 acrklgipee klclphhile ekglvkvsvt vqalldvttl kqalft
//
LOCUS       XP_053906133             670 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich repeat and calponin homology domain-containing protein
            1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053906133
VERSION     XP_053906133.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050158.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..670
                     /product="leucine-rich repeat and calponin homology
                     domain-containing protein 1 isoform X2"
                     /calculated_mol_wt=75089
     Region          <39..>209
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          39..62
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          63..85
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          86..108
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          109..124
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          131..153
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          154..176
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          177..197
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          199..221
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          222..241
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          550..660
                     /region_name="CH_LRCH2"
                     /note="calponin homology (CH) domain found in leucine-rich
                     repeat and calponin homology domain-containing protein 2;
                     cd21271"
                     /db_xref="CDD:409120"
     Site            order(555,559,614,616..617,620..621,623,633..641,647,
                     649..650,652..653,656..657,660)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409120"
     CDS             1..670
                     /gene="LRCH1"
                     /coded_by="XM_054050158.1:100..2112"
                     /db_xref="GeneID:104056525"
ORIGIN      
        1 maalggepqp fpgaalalpa plnrgleral eeaahsggln lsgrkmkefp rsaaalshdl
       61 sdtvradlsk nrltevptel chfvsletln lyhncikiip daivnlqmlt ylnlsrnqls
      121 slpaclcglp lkvliasnnk lgslpeeigq lkqlmeldvs cneitalpqq igqlkslkel
      181 nvrrnylevl pqelvqlplv kfdfscnkvl vipicfrkmv qlqvlllenn plqsppaqic
      241 tkgkvhifky lavqacqikt adslylnaie qqhlpqpvee siddiypskk dsdsgvgsdn
      301 gdkrlsatep sdedtisfnv pmsdimeedh vvkedsghha nsrkvdfhqg sshlivndks
      361 retgnefdes dtlttefmsy iksraaecde llrieedaqw qtdeimnlse eqaldiamie
      421 qlreavdllq dpnsgqmqme msslgqrent ekelefqrrr elimekakse vrtceqgekw
      481 slsqndiivw ntsgqtsyne nkgksptmsp ttnatipfgl kprsvflrpq rnlesidpqf
      541 tirrkmeqmr eerelveqlr enietrlkic lpedlgsalm dgvvlchlvn hvrprsvgsi
      601 hvpspavpkl smakcrrnve nfldacrklg ipeeklclph hileekglvk vsvtvqalld
      661 vttlkqalft
//
LOCUS       XP_009556049             282 aa            linear   VRT 09-MAR-2023
DEFINITION  S-formylglutathione hydrolase [Cuculus canorus].
ACCESSION   XP_009556049
VERSION     XP_009556049.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557754.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556049.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..282
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..282
                     /product="S-formylglutathione hydrolase"
                     /calculated_mol_wt=31330
     Region          2..281
                     /region_name="alpha/beta hydrolases"
                     /note="A functionally diverse superfamily containing
                     proteases, lipases, peroxidases, esterases, epoxide
                     hydrolases and dehalogenases. The catalytic apparatus
                     typically involves three residues (catalytic triad): a
                     serine, a glutamate or aspartate and a...; cl21494"
                     /db_xref="CDD:473884"
     CDS             1..282
                     /gene="ESD"
                     /coded_by="XM_009557754.2:9..857"
                     /db_xref="GeneID:104056500"
ORIGIN      
        1 malkqvssnk ccegfqkvfe hdsaelkckm kfgiylppka etakcpvlyw lsgltcteqn
       61 fitkagfqqa aadhglivva pdtsprgcni egedeswdfg tgagfyvdat edpwktnyrm
      121 ysyikdelpk linanfptdp ermsvfghsm gghgalilal knpgkyksvs afapicnpiq
      181 cqwgkkalgg ylgsdiskwe aydatqlvks ypdshldili dqgkddqfls agqllpdnfi
      241 aacterkipv vfrlqqgydh syffistfin dhikhhakyl na
//
LOCUS       XP_009564964            1064 aa            linear   VRT 09-MAR-2023
DEFINITION  ephrin type-B receptor 6 isoform X1 [Cuculus canorus].
ACCESSION   XP_009564964
VERSION     XP_009564964.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566669.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564964.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1064
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1064
                     /product="ephrin type-B receptor 6 isoform X1"
                     /calculated_mol_wt=119001
     Region          95..271
                     /region_name="EphR_LBD_B6"
                     /note="Ligand Binding Domain of Ephrin type-B Receptor 6;
                     cd10475"
                     /db_xref="CDD:198443"
     Site            order(107,119..122,124..125,130,132,135,168,170,222,
                     230..232,259..261,263)
                     /site_type="other"
                     /note="ephrin binding site [polypeptide binding]"
                     /db_xref="CDD:198443"
     Region          405..492
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(516,580,595)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          517..600
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(596..597,599..600)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          624..696
                     /region_name="EphA2_TM"
                     /note="Ephrin type-A receptor 2 transmembrane domain;
                     pfam14575"
                     /db_xref="CDD:464211"
     Region          694..962
                     /region_name="PTKc_EphR_B"
                     /note="Catalytic domain of the Protein Tyrosine Kinases,
                     Class EphB Ephrin Receptors; cd05065"
                     /db_xref="CDD:173638"
     Site            order(705..709,713,729,731,777..778,780,784,824,828..829,
                     831,842,863..867,876,910)
                     /site_type="active"
                     /db_xref="CDD:173638"
     Site            order(705..707,709,713,729,731,777..778,780,784,829,831,
                     842)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:173638"
     Site            order(824,828,863..867,876,910)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:173638"
     Site            841..869
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:173638"
     Region          988..1056
                     /region_name="SAM_EPH-B6"
                     /note="SAM domain of EPH-B6 subfamily of tyrosine kinase
                     receptors; cd09555"
                     /db_xref="CDD:188954"
     Site            order(1008,1041)
                     /site_type="other"
                     /note="putative phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:188954"
     CDS             1..1064
                     /gene="EPHB6"
                     /coded_by="XM_009566669.2:603..3797"
                     /db_xref="GeneID:104064343"
ORIGIN      
        1 mpwgkerkav wqrvtvsllt eepvflcegl cgliwevikt lqdisdnfkg vvcgfwrwyl
       61 qrifmdsnag isarrvagmg rlwmfcffhl vtsleeilld ttgemseigw tthpsdgwde
      121 vsvlddkkrl irtfevcnva epgqnnwlrt hfierrgahr vhvrlhfsvr dcasmrivas
      181 scketftvyy hqseadtgsq elpewregpw tkvdtiaade sfsqvdstgk vvkmnvkvrs
      241 fgpltkrgfy lafqdsgacm slvavqvffy kcpavvkgfa sfpetfagge rtslvespgt
      301 cvpnaeetsm tgssgvrlhc ngegewmvai grcnckagyq pvdgeqacqa cplgffkvsv
      361 gddlchpcpa hshtllpgss ecvcenryyr sasdnadapc tgipsaprdl syeivgsnvl
      421 ltwrlpkdlg grkdvffnvi ckvcpagssg rcvrcgdsvq feprqvglte srvqvsnlla
      481 rvqytfeiqa vnlvtefsse aphyatinvs tsqsvpsavp mmhqvsrtts sitlswpqpd
      541 qpngiildyq lryfdkaede dnsftftset nmatisnlsp gkiyafqvra rtavgygpys
      601 gkmyfqtlmr gersemvqdr lplivgsalg glaflviaai ailaiifksk rretpytdrl
      661 qqyisarglg akyyidpsty edpneailef akeidvslik ieevigsgef gevcfgrlkh
      721 pgkreytvai ktlksgytde qrreflseas imgqfehpnv ihlegvvtks rpvmivtefm
      781 engsldsflr qkegqfsvlq lvgmlrgiaa gmrylsdmny vhrdlaarni lvnsnlvckv
      841 sdfglsrfle ddasnptytg algckipirw tapeavqyrk ftsssdvwsy givmwevmsy
      901 gerpywdmsn qdvinaided yrlppppdcp tvlhllmldc wqkergqrpk feqivsaldk
      961 lirkpsalka tgtgssrpsq pllsnsppdf pslsnahewl daikmgcyke nfdqaglitf
     1021 dvishmtled iqrigitlvg hqkkilnsiq lmrvhlnqre tvev
//
LOCUS       XP_053906524            1051 aa            linear   VRT 09-MAR-2023
DEFINITION  ephrin type-B receptor 6 isoform X2 [Cuculus canorus].
ACCESSION   XP_053906524
VERSION     XP_053906524.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050549.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1051
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1051
                     /product="ephrin type-B receptor 6 isoform X2"
                     /calculated_mol_wt=117522
     Region          82..258
                     /region_name="EphR_LBD_B6"
                     /note="Ligand Binding Domain of Ephrin type-B Receptor 6;
                     cd10475"
                     /db_xref="CDD:198443"
     Site            order(94,106..109,111..112,117,119,122,155,157,209,
                     217..219,246..248,250)
                     /site_type="other"
                     /note="ephrin binding site [polypeptide binding]"
                     /db_xref="CDD:198443"
     Region          392..479
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(503,567,582)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          504..587
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(583..584,586..587)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          611..683
                     /region_name="EphA2_TM"
                     /note="Ephrin type-A receptor 2 transmembrane domain;
                     pfam14575"
                     /db_xref="CDD:464211"
     Region          681..949
                     /region_name="PTKc_EphR_B"
                     /note="Catalytic domain of the Protein Tyrosine Kinases,
                     Class EphB Ephrin Receptors; cd05065"
                     /db_xref="CDD:173638"
     Site            order(692..696,700,716,718,764..765,767,771,811,815..816,
                     818,829,850..854,863,897)
                     /site_type="active"
                     /db_xref="CDD:173638"
     Site            order(692..694,696,700,716,718,764..765,767,771,816,818,
                     829)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:173638"
     Site            order(811,815,850..854,863,897)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:173638"
     Site            828..856
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:173638"
     Region          975..1043
                     /region_name="SAM_EPH-B6"
                     /note="SAM domain of EPH-B6 subfamily of tyrosine kinase
                     receptors; cd09555"
                     /db_xref="CDD:188954"
     Site            order(995,1028)
                     /site_type="other"
                     /note="putative phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:188954"
     CDS             1..1051
                     /gene="EPHB6"
                     /coded_by="XM_054050549.1:57..3212"
                     /db_xref="GeneID:104064343"
ORIGIN      
        1 mysqkfttel iflceglcgl iweviktlqd isdnfkgvvc gfwrwylqri fmdsnagisa
       61 rrvagmgrlw mfcffhlvts leeilldttg emseigwtth psdgwdevsv lddkkrlirt
      121 fevcnvaepg qnnwlrthfi errgahrvhv rlhfsvrdca smrivassck etftvyyhqs
      181 eadtgsqelp ewregpwtkv dtiaadesfs qvdstgkvvk mnvkvrsfgp ltkrgfylaf
      241 qdsgacmslv avqvffykcp avvkgfasfp etfaggerts lvespgtcvp naeetsmtgs
      301 sgvrlhcnge gewmvaigrc nckagyqpvd geqacqacpl gffkvsvgdd lchpcpahsh
      361 tllpgssecv cenryyrsas dnadapctgi psaprdlsye ivgsnvlltw rlpkdlggrk
      421 dvffnvickv cpagssgrcv rcgdsvqfep rqvgltesrv qvsnllarvq ytfeiqavnl
      481 vtefsseaph yatinvstsq svpsavpmmh qvsrttssit lswpqpdqpn giildyqlry
      541 fdkaededns ftftsetnma tisnlspgki yafqvrarta vgygpysgkm yfqtlmrger
      601 semvqdrlpl ivgsalggla flviaaiail aiifkskrre tpytdrlqqy isarglgaky
      661 yidpstyedp neailefake idvslikiee vigsgefgev cfgrlkhpgk reytvaiktl
      721 ksgytdeqrr eflseasimg qfehpnvihl egvvtksrpv mivtefmeng sldsflrqke
      781 gqfsvlqlvg mlrgiaagmr ylsdmnyvhr dlaarnilvn snlvckvsdf glsrfledda
      841 snptytgalg ckipirwtap eavqyrkfts ssdvwsygiv mwevmsyger pywdmsnqdv
      901 inaidedyrl ppppdcptvl hllmldcwqk ergqrpkfeq ivsaldklir kpsalkatgt
      961 gssrpsqpll snsppdfpsl snahewldai kmgcykenfd qaglitfdvi shmtlediqr
     1021 igitlvghqk kilnsiqlmr vhlnqretve v
//
LOCUS       XP_053906597            1000 aa            linear   VRT 09-MAR-2023
DEFINITION  ephrin type-B receptor 6 isoform X3 [Cuculus canorus].
ACCESSION   XP_053906597
VERSION     XP_053906597.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050622.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1000
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1000
                     /product="ephrin type-B receptor 6 isoform X3"
                     /calculated_mol_wt=111708
     Region          95..271
                     /region_name="EphR_LBD_B6"
                     /note="Ligand Binding Domain of Ephrin type-B Receptor 6;
                     cd10475"
                     /db_xref="CDD:198443"
     Site            order(107,119..122,124..125,130,132,135,168,170,222,
                     230..232,259..261,263)
                     /site_type="other"
                     /note="ephrin binding site [polypeptide binding]"
                     /db_xref="CDD:198443"
     Region          405..492
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(516,580,595)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          517..600
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(596..597,599..600)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          624..696
                     /region_name="EphA2_TM"
                     /note="Ephrin type-A receptor 2 transmembrane domain;
                     pfam14575"
                     /db_xref="CDD:464211"
     Region          694..962
                     /region_name="PTKc_EphR_B"
                     /note="Catalytic domain of the Protein Tyrosine Kinases,
                     Class EphB Ephrin Receptors; cd05065"
                     /db_xref="CDD:173638"
     Site            order(705..709,713,729,731,777..778,780,784,824,828..829,
                     831,842,863..867,876,910)
                     /site_type="active"
                     /db_xref="CDD:173638"
     Site            order(705..707,709,713,729,731,777..778,780,784,829,831,
                     842)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:173638"
     Site            order(824,828,863..867,876,910)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:173638"
     Site            841..869
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:173638"
     CDS             1..1000
                     /gene="EPHB6"
                     /coded_by="XM_054050622.1:606..3608"
                     /db_xref="GeneID:104064343"
ORIGIN      
        1 mpwgkerkav wqrvtvsllt eepvflcegl cgliwevikt lqdisdnfkg vvcgfwrwyl
       61 qrifmdsnag isarrvagmg rlwmfcffhl vtsleeilld ttgemseigw tthpsdgwde
      121 vsvlddkkrl irtfevcnva epgqnnwlrt hfierrgahr vhvrlhfsvr dcasmrivas
      181 scketftvyy hqseadtgsq elpewregpw tkvdtiaade sfsqvdstgk vvkmnvkvrs
      241 fgpltkrgfy lafqdsgacm slvavqvffy kcpavvkgfa sfpetfagge rtslvespgt
      301 cvpnaeetsm tgssgvrlhc ngegewmvai grcnckagyq pvdgeqacqa cplgffkvsv
      361 gddlchpcpa hshtllpgss ecvcenryyr sasdnadapc tgipsaprdl syeivgsnvl
      421 ltwrlpkdlg grkdvffnvi ckvcpagssg rcvrcgdsvq feprqvglte srvqvsnlla
      481 rvqytfeiqa vnlvtefsse aphyatinvs tsqsvpsavp mmhqvsrtts sitlswpqpd
      541 qpngiildyq lryfdkaede dnsftftset nmatisnlsp gkiyafqvra rtavgygpys
      601 gkmyfqtlmr gersemvqdr lplivgsalg glaflviaai ailaiifksk rretpytdrl
      661 qqyisarglg akyyidpsty edpneailef akeidvslik ieevigsgef gevcfgrlkh
      721 pgkreytvai ktlksgytde qrreflseas imgqfehpnv ihlegvvtks rpvmivtefm
      781 engsldsflr qkegqfsvlq lvgmlrgiaa gmrylsdmny vhrdlaarni lvnsnlvckv
      841 sdfglsrfle ddasnptytg algckipirw tapeavqyrk ftsssdvwsy givmwevmsy
      901 gerpywdmsn qdvinaided yrlppppdcp tvlhllmldc wqkergqrpk feqivsaldk
      961 lirkpsalka tgtgssrlls nprsasrrgr tshkdhlsls
//
LOCUS       XP_053906664             902 aa            linear   VRT 09-MAR-2023
DEFINITION  ephrin type-B receptor 6 isoform X4 [Cuculus canorus].
ACCESSION   XP_053906664
VERSION     XP_053906664.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050689.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..902
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..902
                     /product="ephrin type-B receptor 6 isoform X4"
                     /calculated_mol_wt=100545
     Region          95..271
                     /region_name="EphR_LBD_B6"
                     /note="Ligand Binding Domain of Ephrin type-B Receptor 6;
                     cd10475"
                     /db_xref="CDD:198443"
     Site            order(107,119..122,124..125,130,132,135,168,170,222,
                     230..232,259..261,263)
                     /site_type="other"
                     /note="ephrin binding site [polypeptide binding]"
                     /db_xref="CDD:198443"
     Region          405..492
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(516,580,595)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          517..600
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(596..597,599..600)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          624..696
                     /region_name="EphA2_TM"
                     /note="Ephrin type-A receptor 2 transmembrane domain;
                     pfam14575"
                     /db_xref="CDD:464211"
     Region          694..>901
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(705..708,711,713,729,731,761,777..780,824,828..829,
                     831,841..842)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270870"
     CDS             1..902
                     /gene="EPHB6"
                     /coded_by="XM_054050689.1:606..3314"
                     /db_xref="GeneID:104064343"
ORIGIN      
        1 mpwgkerkav wqrvtvsllt eepvflcegl cgliwevikt lqdisdnfkg vvcgfwrwyl
       61 qrifmdsnag isarrvagmg rlwmfcffhl vtsleeilld ttgemseigw tthpsdgwde
      121 vsvlddkkrl irtfevcnva epgqnnwlrt hfierrgahr vhvrlhfsvr dcasmrivas
      181 scketftvyy hqseadtgsq elpewregpw tkvdtiaade sfsqvdstgk vvkmnvkvrs
      241 fgpltkrgfy lafqdsgacm slvavqvffy kcpavvkgfa sfpetfagge rtslvespgt
      301 cvpnaeetsm tgssgvrlhc ngegewmvai grcnckagyq pvdgeqacqa cplgffkvsv
      361 gddlchpcpa hshtllpgss ecvcenryyr sasdnadapc tgipsaprdl syeivgsnvl
      421 ltwrlpkdlg grkdvffnvi ckvcpagssg rcvrcgdsvq feprqvglte srvqvsnlla
      481 rvqytfeiqa vnlvtefsse aphyatinvs tsqsvpsavp mmhqvsrtts sitlswpqpd
      541 qpngiildyq lryfdkaede dnsftftset nmatisnlsp gkiyafqvra rtavgygpys
      601 gkmyfqtlmr gersemvqdr lplivgsalg glaflviaai ailaiifksk rretpytdrl
      661 qqyisarglg akyyidpsty edpneailef akeidvslik ieevigsgef gevcfgrlkh
      721 pgkreytvai ktlksgytde qrreflseas imgqfehpnv ihlegvvtks rpvmivtefm
      781 engsldsflr qkegqfsvlq lvgmlrgiaa gmrylsdmny vhrdlaarni lvnsnlvckv
      841 sdfglsrfle ddasnptytg algckipirw tapeavqyrk ftsssdvwsy givmwevmsy
      901 gn
//
LOCUS       XP_053906732             890 aa            linear   VRT 09-MAR-2023
DEFINITION  ephrin type-B receptor 6 isoform X5 [Cuculus canorus].
ACCESSION   XP_053906732
VERSION     XP_053906732.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050757.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..890
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..890
                     /product="ephrin type-B receptor 6 isoform X5"
                     /calculated_mol_wt=98759
     Region          <1..97
                     /region_name="EphR_LBD"
                     /note="Ligand Binding Domain of Ephrin Receptors; cl02704"
                     /db_xref="CDD:470656"
     Region          231..318
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(342,406,421)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          343..426
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(422..423,425..426)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          450..522
                     /region_name="EphA2_TM"
                     /note="Ephrin type-A receptor 2 transmembrane domain;
                     pfam14575"
                     /db_xref="CDD:464211"
     Region          520..788
                     /region_name="PTKc_EphR_B"
                     /note="Catalytic domain of the Protein Tyrosine Kinases,
                     Class EphB Ephrin Receptors; cd05065"
                     /db_xref="CDD:173638"
     Site            order(531..535,539,555,557,603..604,606,610,650,654..655,
                     657,668,689..693,702,736)
                     /site_type="active"
                     /db_xref="CDD:173638"
     Site            order(531..533,535,539,555,557,603..604,606,610,655,657,
                     668)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:173638"
     Site            order(650,654,689..693,702,736)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:173638"
     Site            667..695
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:173638"
     Region          814..882
                     /region_name="SAM_EPH-B6"
                     /note="SAM domain of EPH-B6 subfamily of tyrosine kinase
                     receptors; cd09555"
                     /db_xref="CDD:188954"
     Site            order(834,867)
                     /site_type="other"
                     /note="putative phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:188954"
     CDS             1..890
                     /gene="EPHB6"
                     /coded_by="XM_054050757.1:379..3051"
                     /db_xref="GeneID:104064343"
ORIGIN      
        1 mrivasscke tftvyyhqse adtgsqelpe wregpwtkvd tiaadesfsq vdstgkvvkm
       61 nvkvrsfgpl tkrgfylafq dsgacmslva vqvffykcpa vvkgfasfpe tfaggertsl
      121 vespgtcvpn aeetsmtgss gvrlhcngeg ewmvaigrcn ckagyqpvdg eqacqacplg
      181 ffkvsvgddl chpcpahsht llpgssecvc enryyrsasd nadapctgip saprdlsyei
      241 vgsnvlltwr lpkdlggrkd vffnvickvc pagssgrcvr cgdsvqfepr qvgltesrvq
      301 vsnllarvqy tfeiqavnlv tefsseaphy atinvstsqs vpsavpmmhq vsrttssitl
      361 swpqpdqpng iildyqlryf dkaedednsf tftsetnmat isnlspgkiy afqvrartav
      421 gygpysgkmy fqtlmrgers emvqdrlpli vgsalgglaf lviaaiaila iifkskrret
      481 pytdrlqqyi sarglgakyy idpstyedpn eailefakei dvslikieev igsgefgevc
      541 fgrlkhpgkr eytvaiktlk sgytdeqrre flseasimgq fehpnvihle gvvtksrpvm
      601 ivtefmengs ldsflrqkeg qfsvlqlvgm lrgiaagmry lsdmnyvhrd laarnilvns
      661 nlvckvsdfg lsrfleddas nptytgalgc kipirwtape avqyrkftss sdvwsygivm
      721 wevmsygerp ywdmsnqdvi naidedyrlp pppdcptvlh llmldcwqke rgqrpkfeqi
      781 vsaldklirk psalkatgtg ssrpsqplls nsppdfpsls nahewldaik mgcykenfdq
      841 aglitfdvis hmtlediqri gitlvghqkk ilnsiqlmrv hlnqretvev
//
LOCUS       XP_053906854            1418 aa            linear   VRT 09-MAR-2023
DEFINITION  stAR-related lipid transfer protein 13 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053906854
VERSION     XP_053906854.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050879.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1418
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1418
                     /product="stAR-related lipid transfer protein 13 isoform
                     X1"
                     /calculated_mol_wt=159382
     Region          357..420
                     /region_name="SAM_DLC2"
                     /note="SAM domain of STARD13-like subfamily; cd09592"
                     /db_xref="CDD:188991"
     Site            order(371,374,376)
                     /site_type="lipid-binding"
                     /note="lipid binding site [chemical binding]"
                     /db_xref="CDD:188991"
     Region          963..1179
                     /region_name="RhoGAP_DLC1"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain of DLC1-like proteins. DLC1 shows in
                     vitro GAP activity towards RhoA and CDC42. Beside its
                     C-terminal GAP domain, DLC1 also contains a SAM (sterile
                     alpha motif) and a START...; cd04375"
                     /db_xref="CDD:239840"
     Site            order(1005,1042,1046,1114,1117..1118,1159)
                     /site_type="other"
                     /note="putative GTPase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:239840"
     Site            1005
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239840"
     Region          1205..1409
                     /region_name="START_STARD13-like"
                     /note="C-terminal lipid-binding START domain of mammalian
                     STARD13 and related proteins, which also have an
                     N-terminal Rho GTPase-activating protein (RhoGAP) domain;
                     cd08909"
                     /db_xref="CDD:176918"
     Site            order(1236..1237,1245,1258,1260,1271,1275,1279,1282..1283,
                     1285..1286,1304,1306..1309,1312,1315,1317,1319,1336,1352,
                     1354..1357,1359,1371,1373,1375,1377,1379,1381,1388,
                     1390..1392,1394..1396,1398..1399,1402)
                     /site_type="other"
                     /note="putative lipid binding site [chemical binding]"
                     /db_xref="CDD:176918"
     CDS             1..1418
                     /gene="STARD13"
                     /coded_by="XM_054050879.1:307..4563"
                     /db_xref="GeneID:104066156"
ORIGIN      
        1 mkltgmetni yeeqgspyls sakcrgtpke aryeehqrkt enqgspsefq nvlletelsl
       61 lsasslldhe etslqigtaa gcvsatdqse tkqlceeilc strhkpeedp lnlslhiewp
      121 vltgkksdek persreirii khkpsaiafs dfkllshean tklcicevge aedfsseeee
      181 adgrgdedvf telplyevff nvlhrknasq rkkakheltk yqhichledc edhsekelkd
      241 hdkegkhmel etqpekgsew sdsmsclmkk leqlnldiee alsggsspss tpstnrhmql
      301 cpvqvktsfy gdhqgkgswt nkradypdld clpypvpsga rpktdvlfqk lckekaeiea
      361 keacdwlraa gfpqyaqfye dsqfpidiaa vkkdhdfldk dlveplcrrl ntlnkcasmk
      421 ldvnfqrkks edsdeedlca isnkwtfqrt srrwsrvddi dallhqsdkh gssgdlkmkn
      481 ttssesvltd lsepevssih sessggsdnr sqsgisssar etcecsgqhd vestllqdst
      541 aintalsprd nlknekptrt kaktflkrme tlkakgvhgk lkgsgrtgpl eisgpvlqye
      601 pkslkdmhcv qivngdlqnf gqdsvkrgls fsaksssdss qsensssgvs tpclkerkch
      661 eankrggmyl edldvlagta lrqvvdqnhk nefhsqenlv vhipkdhkpg tfpkalsies
      721 lsptdnsnsv nwrtgsislg kqncstpkes gltaccpkes risiydnvpg shlyastgdl
      781 ldlekdvffp hlddilqhvn glqevvdgws knvlpglpan dvsvreppsl pfqspaqitl
      841 dfernsvsdg rttpsdmdrd gtslneseat avrdrrdsgv gasltrpsrr lrwhsfqish
      901 hlshsiaslh isnqsaaqln llqkfsllrl taimekysms nkhgwtwsvp kfmkrmkvpd
      961 ykdknvfgvp livhvqrtgq plpqsiqqal rylrsncldq vglfrksgvk sriqalrqmn
     1021 esspenvnye dqsaydvadm vkqffrdlpe plltsklget flhiyqyvpk eqrlqavqaa
     1081 imlmsdenre vlqtllcfls dvtsveenqm tpmniavcla pslfhlnivk kessprviqk
     1141 kyatgkpdqk dlsenlaatq glahmimecn klfevphemi tqsrnsyvda evhsptleel
     1201 gkqmdeeggn yqmyleslmq nlqkeakekf kgwvtysste ntelaykkvg dgnplrlwka
     1261 sveveappsv vlnrvlrerh lwdedflqwk vvetldkqte vyqyvlnsma phpvrdfvvl
     1321 rtwrtdlpkg mcmlvaisve heeaplmgav ravvmdsqyl iepcgsgkar lthicridlk
     1381 ghspewynkg fghlcaaeva rirnsfqpli aegpetki
//
LOCUS       XP_053906925            1418 aa            linear   VRT 09-MAR-2023
DEFINITION  stAR-related lipid transfer protein 13 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053906925
VERSION     XP_053906925.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050950.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1418
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1418
                     /product="stAR-related lipid transfer protein 13 isoform
                     X1"
                     /calculated_mol_wt=159382
     Region          357..420
                     /region_name="SAM_DLC2"
                     /note="SAM domain of STARD13-like subfamily; cd09592"
                     /db_xref="CDD:188991"
     Site            order(371,374,376)
                     /site_type="lipid-binding"
                     /note="lipid binding site [chemical binding]"
                     /db_xref="CDD:188991"
     Region          963..1179
                     /region_name="RhoGAP_DLC1"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain of DLC1-like proteins. DLC1 shows in
                     vitro GAP activity towards RhoA and CDC42. Beside its
                     C-terminal GAP domain, DLC1 also contains a SAM (sterile
                     alpha motif) and a START...; cd04375"
                     /db_xref="CDD:239840"
     Site            order(1005,1042,1046,1114,1117..1118,1159)
                     /site_type="other"
                     /note="putative GTPase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:239840"
     Site            1005
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239840"
     Region          1205..1409
                     /region_name="START_STARD13-like"
                     /note="C-terminal lipid-binding START domain of mammalian
                     STARD13 and related proteins, which also have an
                     N-terminal Rho GTPase-activating protein (RhoGAP) domain;
                     cd08909"
                     /db_xref="CDD:176918"
     Site            order(1236..1237,1245,1258,1260,1271,1275,1279,1282..1283,
                     1285..1286,1304,1306..1309,1312,1315,1317,1319,1336,1352,
                     1354..1357,1359,1371,1373,1375,1377,1379,1381,1388,
                     1390..1392,1394..1396,1398..1399,1402)
                     /site_type="other"
                     /note="putative lipid binding site [chemical binding]"
                     /db_xref="CDD:176918"
     CDS             1..1418
                     /gene="STARD13"
                     /coded_by="XM_054050950.1:520..4776"
                     /db_xref="GeneID:104066156"
ORIGIN      
        1 mkltgmetni yeeqgspyls sakcrgtpke aryeehqrkt enqgspsefq nvlletelsl
       61 lsasslldhe etslqigtaa gcvsatdqse tkqlceeilc strhkpeedp lnlslhiewp
      121 vltgkksdek persreirii khkpsaiafs dfkllshean tklcicevge aedfsseeee
      181 adgrgdedvf telplyevff nvlhrknasq rkkakheltk yqhichledc edhsekelkd
      241 hdkegkhmel etqpekgsew sdsmsclmkk leqlnldiee alsggsspss tpstnrhmql
      301 cpvqvktsfy gdhqgkgswt nkradypdld clpypvpsga rpktdvlfqk lckekaeiea
      361 keacdwlraa gfpqyaqfye dsqfpidiaa vkkdhdfldk dlveplcrrl ntlnkcasmk
      421 ldvnfqrkks edsdeedlca isnkwtfqrt srrwsrvddi dallhqsdkh gssgdlkmkn
      481 ttssesvltd lsepevssih sessggsdnr sqsgisssar etcecsgqhd vestllqdst
      541 aintalsprd nlknekptrt kaktflkrme tlkakgvhgk lkgsgrtgpl eisgpvlqye
      601 pkslkdmhcv qivngdlqnf gqdsvkrgls fsaksssdss qsensssgvs tpclkerkch
      661 eankrggmyl edldvlagta lrqvvdqnhk nefhsqenlv vhipkdhkpg tfpkalsies
      721 lsptdnsnsv nwrtgsislg kqncstpkes gltaccpkes risiydnvpg shlyastgdl
      781 ldlekdvffp hlddilqhvn glqevvdgws knvlpglpan dvsvreppsl pfqspaqitl
      841 dfernsvsdg rttpsdmdrd gtslneseat avrdrrdsgv gasltrpsrr lrwhsfqish
      901 hlshsiaslh isnqsaaqln llqkfsllrl taimekysms nkhgwtwsvp kfmkrmkvpd
      961 ykdknvfgvp livhvqrtgq plpqsiqqal rylrsncldq vglfrksgvk sriqalrqmn
     1021 esspenvnye dqsaydvadm vkqffrdlpe plltsklget flhiyqyvpk eqrlqavqaa
     1081 imlmsdenre vlqtllcfls dvtsveenqm tpmniavcla pslfhlnivk kessprviqk
     1141 kyatgkpdqk dlsenlaatq glahmimecn klfevphemi tqsrnsyvda evhsptleel
     1201 gkqmdeeggn yqmyleslmq nlqkeakekf kgwvtysste ntelaykkvg dgnplrlwka
     1261 sveveappsv vlnrvlrerh lwdedflqwk vvetldkqte vyqyvlnsma phpvrdfvvl
     1321 rtwrtdlpkg mcmlvaisve heeaplmgav ravvmdsqyl iepcgsgkar lthicridlk
     1381 ghspewynkg fghlcaaeva rirnsfqpli aegpetki
//
LOCUS       XP_053907004            1190 aa            linear   VRT 09-MAR-2023
DEFINITION  stAR-related lipid transfer protein 13 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053907004
VERSION     XP_053907004.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051029.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1190
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1190
                     /product="stAR-related lipid transfer protein 13 isoform
                     X2"
                     /calculated_mol_wt=133453
     Region          129..192
                     /region_name="SAM_DLC2"
                     /note="SAM domain of STARD13-like subfamily; cd09592"
                     /db_xref="CDD:188991"
     Site            order(143,146,148)
                     /site_type="lipid-binding"
                     /note="lipid binding site [chemical binding]"
                     /db_xref="CDD:188991"
     Region          735..951
                     /region_name="RhoGAP_DLC1"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain of DLC1-like proteins. DLC1 shows in
                     vitro GAP activity towards RhoA and CDC42. Beside its
                     C-terminal GAP domain, DLC1 also contains a SAM (sterile
                     alpha motif) and a START...; cd04375"
                     /db_xref="CDD:239840"
     Site            order(777,814,818,886,889..890,931)
                     /site_type="other"
                     /note="putative GTPase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:239840"
     Site            777
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239840"
     Region          977..1181
                     /region_name="START_STARD13-like"
                     /note="C-terminal lipid-binding START domain of mammalian
                     STARD13 and related proteins, which also have an
                     N-terminal Rho GTPase-activating protein (RhoGAP) domain;
                     cd08909"
                     /db_xref="CDD:176918"
     Site            order(1008..1009,1017,1030,1032,1043,1047,1051,1054..1055,
                     1057..1058,1076,1078..1081,1084,1087,1089,1091,1108,1124,
                     1126..1129,1131,1143,1145,1147,1149,1151,1153,1160,
                     1162..1164,1166..1168,1170..1171,1174)
                     /site_type="other"
                     /note="putative lipid binding site [chemical binding]"
                     /db_xref="CDD:176918"
     CDS             1..1190
                     /gene="STARD13"
                     /coded_by="XM_054051029.1:138..3710"
                     /db_xref="GeneID:104066156"
ORIGIN      
        1 mrnntviivs flfifcrhgm snqtqpekgs ewsdsmsclm kkleqlnldi eealsggssp
       61 sstpstnrhm qlcpvqvkts fygdhqgkgs wtnkradypd ldclpypvps garpktdvlf
      121 qklckekaei eakeacdwlr aagfpqyaqf yedsqfpidi aavkkdhdfl dkdlveplcr
      181 rlntlnkcas mkldvnfqrk ksedsdeedl caisnkwtfq rtsrrwsrvd didallhqsd
      241 khgssgdlkm knttssesvl tdlsepevss ihsessggsd nrsqsgisss aretcecsgq
      301 hdvestllqd staintalsp rdnlknekpt rtkaktflkr metlkakgvh gklkgsgrtg
      361 pleisgpvlq yepkslkdmh cvqivngdlq nfgqdsvkrg lsfsaksssd ssqsensssg
      421 vstpclkerk cheankrggm yledldvlag talrqvvdqn hknefhsqen lvvhipkdhk
      481 pgtfpkalsi eslsptdnsn svnwrtgsis lgkqncstpk esgltaccpk esrisiydnv
      541 pgshlyastg dlldlekdvf fphlddilqh vnglqevvdg wsknvlpglp andvsvrepp
      601 slpfqspaqi tldfernsvs dgrttpsdmd rdgtslnese atavrdrrds gvgasltrps
      661 rrlrwhsfqi shhlshsias lhisnqsaaq lnllqkfsll rltaimekys msnkhgwtws
      721 vpkfmkrmkv pdykdknvfg vplivhvqrt gqplpqsiqq alrylrsncl dqvglfrksg
      781 vksriqalrq mnesspenvn yedqsaydva dmvkqffrdl peplltsklg etflhiyqyv
      841 pkeqrlqavq aaimlmsden revlqtllcf lsdvtsveen qmtpmniavc lapslfhlni
      901 vkkessprvi qkkyatgkpd qkdlsenlaa tqglahmime cnklfevphe mitqsrnsyv
      961 daevhsptle elgkqmdeeg gnyqmylesl mqnlqkeake kfkgwvtyss tentelaykk
     1021 vgdgnplrlw kasveveapp svvlnrvlre rhlwdedflq wkvvetldkq tevyqyvlns
     1081 maphpvrdfv vlrtwrtdlp kgmcmlvais veheeaplmg avravvmdsq yliepcgsgk
     1141 arlthicrid lkghspewyn kgfghlcaae varirnsfqp liaegpetki
//
LOCUS       XP_053907092            1155 aa            linear   VRT 09-MAR-2023
DEFINITION  stAR-related lipid transfer protein 13 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053907092
VERSION     XP_053907092.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051117.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1155
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1155
                     /product="stAR-related lipid transfer protein 13 isoform
                     X3"
                     /calculated_mol_wt=129410
     Region          94..157
                     /region_name="SAM_DLC2"
                     /note="SAM domain of STARD13-like subfamily; cd09592"
                     /db_xref="CDD:188991"
     Site            order(108,111,113)
                     /site_type="lipid-binding"
                     /note="lipid binding site [chemical binding]"
                     /db_xref="CDD:188991"
     Region          700..916
                     /region_name="RhoGAP_DLC1"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain of DLC1-like proteins. DLC1 shows in
                     vitro GAP activity towards RhoA and CDC42. Beside its
                     C-terminal GAP domain, DLC1 also contains a SAM (sterile
                     alpha motif) and a START...; cd04375"
                     /db_xref="CDD:239840"
     Site            order(742,779,783,851,854..855,896)
                     /site_type="other"
                     /note="putative GTPase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:239840"
     Site            742
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239840"
     Region          942..1146
                     /region_name="START_STARD13-like"
                     /note="C-terminal lipid-binding START domain of mammalian
                     STARD13 and related proteins, which also have an
                     N-terminal Rho GTPase-activating protein (RhoGAP) domain;
                     cd08909"
                     /db_xref="CDD:176918"
     Site            order(973..974,982,995,997,1008,1012,1016,1019..1020,
                     1022..1023,1041,1043..1046,1049,1052,1054,1056,1073,1089,
                     1091..1094,1096,1108,1110,1112,1114,1116,1118,1125,
                     1127..1129,1131..1133,1135..1136,1139)
                     /site_type="other"
                     /note="putative lipid binding site [chemical binding]"
                     /db_xref="CDD:176918"
     CDS             1..1155
                     /gene="STARD13"
                     /coded_by="XM_054051117.1:54..3521"
                     /db_xref="GeneID:104066156"
ORIGIN      
        1 msclmkkleq lnldieeals ggsspsstps tnrhmqlcpv qvktsfygdh qgkgswtnkr
       61 adypdldclp ypvpsgarpk tdvlfqklck ekaeieakea cdwlraagfp qyaqfyedsq
      121 fpidiaavkk dhdfldkdlv eplcrrlntl nkcasmkldv nfqrkkseds deedlcaisn
      181 kwtfqrtsrr wsrvddidal lhqsdkhgss gdlkmkntts sesvltdlse pevssihses
      241 sggsdnrsqs gisssaretc ecsgqhdves tllqdstain talsprdnlk nekptrtkak
      301 tflkrmetlk akgvhgklkg sgrtgpleis gpvlqyepks lkdmhcvqiv ngdlqnfgqd
      361 svkrglsfsa ksssdssqse nsssgvstpc lkerkchean krggmyledl dvlagtalrq
      421 vvdqnhknef hsqenlvvhi pkdhkpgtfp kalsieslsp tdnsnsvnwr tgsislgkqn
      481 cstpkesglt accpkesris iydnvpgshl yastgdlldl ekdvffphld dilqhvnglq
      541 evvdgwsknv lpglpandvs vreppslpfq spaqitldfe rnsvsdgrtt psdmdrdgts
      601 lneseatavr drrdsgvgas ltrpsrrlrw hsfqishhls hsiaslhisn qsaaqlnllq
      661 kfsllrltai mekysmsnkh gwtwsvpkfm krmkvpdykd knvfgvpliv hvqrtgqplp
      721 qsiqqalryl rsncldqvgl frksgvksri qalrqmness penvnyedqs aydvadmvkq
      781 ffrdlpepll tsklgetflh iyqyvpkeqr lqavqaaiml msdenrevlq tllcflsdvt
      841 sveenqmtpm niavclapsl fhlnivkkes sprviqkkya tgkpdqkdls enlaatqgla
      901 hmimecnklf evphemitqs rnsyvdaevh sptleelgkq mdeeggnyqm yleslmqnlq
      961 keakekfkgw vtysstente laykkvgdgn plrlwkasve veappsvvln rvlrerhlwd
     1021 edflqwkvve tldkqtevyq yvlnsmaphp vrdfvvlrtw rtdlpkgmcm lvaisvehee
     1081 aplmgavrav vmdsqyliep cgsgkarlth icridlkghs pewynkgfgh lcaaevarir
     1141 nsfqpliaeg petki
//
LOCUS       XP_053907172            1118 aa            linear   VRT 09-MAR-2023
DEFINITION  stAR-related lipid transfer protein 13 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053907172
VERSION     XP_053907172.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051197.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1118
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1118
                     /product="stAR-related lipid transfer protein 13 isoform
                     X4"
                     /calculated_mol_wt=125790
     Region          57..120
                     /region_name="SAM_DLC2"
                     /note="SAM domain of STARD13-like subfamily; cd09592"
                     /db_xref="CDD:188991"
     Site            order(71,74,76)
                     /site_type="lipid-binding"
                     /note="lipid binding site [chemical binding]"
                     /db_xref="CDD:188991"
     Region          663..879
                     /region_name="RhoGAP_DLC1"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain of DLC1-like proteins. DLC1 shows in
                     vitro GAP activity towards RhoA and CDC42. Beside its
                     C-terminal GAP domain, DLC1 also contains a SAM (sterile
                     alpha motif) and a START...; cd04375"
                     /db_xref="CDD:239840"
     Site            order(705,742,746,814,817..818,859)
                     /site_type="other"
                     /note="putative GTPase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:239840"
     Site            705
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239840"
     Region          905..1109
                     /region_name="START_STARD13-like"
                     /note="C-terminal lipid-binding START domain of mammalian
                     STARD13 and related proteins, which also have an
                     N-terminal Rho GTPase-activating protein (RhoGAP) domain;
                     cd08909"
                     /db_xref="CDD:176918"
     Site            order(936..937,945,958,960,971,975,979,982..983,985..986,
                     1004,1006..1009,1012,1015,1017,1019,1036,1052,1054..1057,
                     1059,1071,1073,1075,1077,1079,1081,1088,1090..1092,
                     1094..1096,1098..1099,1102)
                     /site_type="other"
                     /note="putative lipid binding site [chemical binding]"
                     /db_xref="CDD:176918"
     CDS             1..1118
                     /gene="STARD13"
                     /coded_by="XM_054051197.1:182..3538"
                     /db_xref="GeneID:104066156"
ORIGIN      
        1 mfkqvprtsg tgcyylnsms pegqemylrf dqtarrppyr msrilarhql ltkiqqeiea
       61 keacdwlraa gfpqyaqfye dsqfpidiaa vkkdhdfldk dlveplcrrl ntlnkcasmk
      121 ldvnfqrkks edsdeedlca isnkwtfqrt srrwsrvddi dallhqsdkh gssgdlkmkn
      181 ttssesvltd lsepevssih sessggsdnr sqsgisssar etcecsgqhd vestllqdst
      241 aintalsprd nlknekptrt kaktflkrme tlkakgvhgk lkgsgrtgpl eisgpvlqye
      301 pkslkdmhcv qivngdlqnf gqdsvkrgls fsaksssdss qsensssgvs tpclkerkch
      361 eankrggmyl edldvlagta lrqvvdqnhk nefhsqenlv vhipkdhkpg tfpkalsies
      421 lsptdnsnsv nwrtgsislg kqncstpkes gltaccpkes risiydnvpg shlyastgdl
      481 ldlekdvffp hlddilqhvn glqevvdgws knvlpglpan dvsvreppsl pfqspaqitl
      541 dfernsvsdg rttpsdmdrd gtslneseat avrdrrdsgv gasltrpsrr lrwhsfqish
      601 hlshsiaslh isnqsaaqln llqkfsllrl taimekysms nkhgwtwsvp kfmkrmkvpd
      661 ykdknvfgvp livhvqrtgq plpqsiqqal rylrsncldq vglfrksgvk sriqalrqmn
      721 esspenvnye dqsaydvadm vkqffrdlpe plltsklget flhiyqyvpk eqrlqavqaa
      781 imlmsdenre vlqtllcfls dvtsveenqm tpmniavcla pslfhlnivk kessprviqk
      841 kyatgkpdqk dlsenlaatq glahmimecn klfevphemi tqsrnsyvda evhsptleel
      901 gkqmdeeggn yqmyleslmq nlqkeakekf kgwvtysste ntelaykkvg dgnplrlwka
      961 sveveappsv vlnrvlrerh lwdedflqwk vvetldkqte vyqyvlnsma phpvrdfvvl
     1021 rtwrtdlpkg mcmlvaisve heeaplmgav ravvmdsqyl iepcgsgkar lthicridlk
     1081 ghspewynkg fghlcaaeva rirnsfqpli aegpetki
//
LOCUS       XP_053907237            1101 aa            linear   VRT 09-MAR-2023
DEFINITION  stAR-related lipid transfer protein 13 isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053907237
VERSION     XP_053907237.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051262.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1101
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1101
                     /product="stAR-related lipid transfer protein 13 isoform
                     X5"
                     /calculated_mol_wt=123831
     Region          40..103
                     /region_name="SAM_DLC2"
                     /note="SAM domain of STARD13-like subfamily; cd09592"
                     /db_xref="CDD:188991"
     Site            order(54,57,59)
                     /site_type="lipid-binding"
                     /note="lipid binding site [chemical binding]"
                     /db_xref="CDD:188991"
     Region          646..862
                     /region_name="RhoGAP_DLC1"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain of DLC1-like proteins. DLC1 shows in
                     vitro GAP activity towards RhoA and CDC42. Beside its
                     C-terminal GAP domain, DLC1 also contains a SAM (sterile
                     alpha motif) and a START...; cd04375"
                     /db_xref="CDD:239840"
     Site            order(688,725,729,797,800..801,842)
                     /site_type="other"
                     /note="putative GTPase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:239840"
     Site            688
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239840"
     Region          888..1092
                     /region_name="START_STARD13-like"
                     /note="C-terminal lipid-binding START domain of mammalian
                     STARD13 and related proteins, which also have an
                     N-terminal Rho GTPase-activating protein (RhoGAP) domain;
                     cd08909"
                     /db_xref="CDD:176918"
     Site            order(919..920,928,941,943,954,958,962,965..966,968..969,
                     987,989..992,995,998,1000,1002,1019,1035,1037..1040,1042,
                     1054,1056,1058,1060,1062,1064,1071,1073..1075,1077..1079,
                     1081..1082,1085)
                     /site_type="other"
                     /note="putative lipid binding site [chemical binding]"
                     /db_xref="CDD:176918"
     CDS             1..1101
                     /gene="STARD13"
                     /coded_by="XM_054051262.1:78..3383"
                     /db_xref="GeneID:104066156"
ORIGIN      
        1 msrrpaqaql rrslseqlrd stakawdllw rnvrerriae ieakeacdwl raagfpqyaq
       61 fyedsqfpid iaavkkdhdf ldkdlveplc rrlntlnkca smkldvnfqr kksedsdeed
      121 lcaisnkwtf qrtsrrwsrv ddidallhqs dkhgssgdlk mknttssesv ltdlsepevs
      181 sihsessggs dnrsqsgiss saretcecsg qhdvestllq dstaintals prdnlknekp
      241 trtkaktflk rmetlkakgv hgklkgsgrt gpleisgpvl qyepkslkdm hcvqivngdl
      301 qnfgqdsvkr glsfsaksss dssqsensss gvstpclker kcheankrgg myledldvla
      361 gtalrqvvdq nhknefhsqe nlvvhipkdh kpgtfpkals ieslsptdns nsvnwrtgsi
      421 slgkqncstp kesgltaccp kesrisiydn vpgshlyast gdlldlekdv ffphlddilq
      481 hvnglqevvd gwsknvlpgl pandvsvrep pslpfqspaq itldfernsv sdgrttpsdm
      541 drdgtslnes eatavrdrrd sgvgasltrp srrlrwhsfq ishhlshsia slhisnqsaa
      601 qlnllqkfsl lrltaimeky smsnkhgwtw svpkfmkrmk vpdykdknvf gvplivhvqr
      661 tgqplpqsiq qalrylrsnc ldqvglfrks gvksriqalr qmnesspenv nyedqsaydv
      721 admvkqffrd lpeplltskl getflhiyqy vpkeqrlqav qaaimlmsde nrevlqtllc
      781 flsdvtsvee nqmtpmniav clapslfhln ivkkessprv iqkkyatgkp dqkdlsenla
      841 atqglahmim ecnklfevph emitqsrnsy vdaevhsptl eelgkqmdee ggnyqmyles
      901 lmqnlqkeak ekfkgwvtys stentelayk kvgdgnplrl wkasveveap psvvlnrvlr
      961 erhlwdedfl qwkvvetldk qtevyqyvln smaphpvrdf vvlrtwrtdl pkgmcmlvai
     1021 sveheeaplm gavravvmds qyliepcgsg karlthicri dlkghspewy nkgfghlcaa
     1081 evarirnsfq pliaegpetk i
//
LOCUS       XP_009568941             581 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier family 15 member 5 [Cuculus canorus].
ACCESSION   XP_009568941
VERSION     XP_009568941.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009570646.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009568941.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..581
                     /product="solute carrier family 15 member 5"
                     /calculated_mol_wt=65354
     Region          43..534
                     /region_name="MFS_SLC15A5"
                     /note="Solute Carrier family 15 member 5 of the Major
                     Facilitator Superfamily of transporters; cd17349"
                     /db_xref="CDD:340907"
     Site            order(56..57,60..61,64,97,169..170,172..174,177,200,
                     203..204,207,319,322..323,326..328,331,362,366,446..447,
                     451,455,471,474..475,478..479,482)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:340907"
     CDS             1..581
                     /gene="SLC15A5"
                     /coded_by="XM_009570646.2:1..1746"
                     /db_xref="GeneID:104067848"
ORIGIN      
        1 mpgadrremq ervllnrtad keqrllsgrg nhsgklsqpq kklqeaicvl lvelcerftf
       61 fgivcnmilf ctvklgyrny qaaivnmcfv gtsmlmpvla gwlaeclvgr iklvcicmfl
      121 hflgtallpv vafpfediyi drrhilhtlt kreqkivfyf alltaslgvg giraivcpls
      181 aynledcgpk ellsffnwfy wlinlnsavv fvsisyiqqs varnlgflip fvsvlmamit
      241 ihmvrgemiy kpktdssllt tfgviasalk tccvryryfg gsvtnwldha kenyggqyse
      301 iqvestksla klfplfafqi lyracimqip sgyylqtmns nlhfsgfvlp vaamnvisiv
      361 pllilvpile cinsylfssk gtghsptiyi vigqlsaals vmvagfseih rkhfpqveqt
      421 lseevllvss mpcfhlapqy illgvaealv tpscsllsfr lvpermrais mhfltlfnga
      481 gcfigaffvq tahagsqgnw fphllregkl erfffflasl mmvntlgfwt iahrynsliq
      541 eytndfrgsl peekllkhek tikhygsvle hspilspmek t
//
LOCUS       XP_053907577             342 aa            linear   VRT 09-MAR-2023
DEFINITION  deoxyribose-phosphate aldolase isoform X1 [Cuculus canorus].
ACCESSION   XP_053907577
VERSION     XP_053907577.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051602.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..342
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..342
                     /product="deoxyribose-phosphate aldolase isoform X1"
                     /calculated_mol_wt=37656
     Region          74..301
                     /region_name="DeoC"
                     /note="2-deoxyribose-5-phosphate aldolase (DERA) of the
                     DeoC family; cd00959"
                     /db_xref="CDD:188646"
     Site            order(83,85,87,127..129,153,161,166,171..174,183,185,
                     204..205,219)
                     /site_type="other"
                     /note="intersubunit interface [polypeptide binding]"
                     /db_xref="CDD:188646"
     Site            242
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:188646"
     CDS             1..342
                     /gene="DERA"
                     /coded_by="XM_054051602.1:51..1079"
                     /db_xref="GeneID:104067844"
ORIGIN      
        1 mqfklldsyk ltlfsffkva llchvlihal lpvtelgwis kvhvnrpavv rhaeqikkwr
       61 tvkgnwqaaw llkavtcidl ttlsgddtps nvhrlcfkak hpiredllka ldmhdkgitv
      121 gavcvyparv tdavnalkaa gcnipvasva agfpsgqtpl etklaeikla veygareidi
      181 visrslvlsg qweglyeeir qcrevcgeah mktilatgel gsldnvyras miammagsdf
      241 iktstgkeve natfpvgvvm mraireyywq tgnkvgfkpa ggirtakeai twlmlvkeel
      301 gvewltpelf rlgassllgd iekqifyhvt gsyalqhdla ta
//
LOCUS       XP_053907665             318 aa            linear   VRT 09-MAR-2023
DEFINITION  deoxyribose-phosphate aldolase isoform X2 [Cuculus canorus].
ACCESSION   XP_053907665
VERSION     XP_053907665.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051690.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="deoxyribose-phosphate aldolase isoform X2"
                     /calculated_mol_wt=34706
     Region          50..277
                     /region_name="DeoC"
                     /note="2-deoxyribose-5-phosphate aldolase (DERA) of the
                     DeoC family; cd00959"
                     /db_xref="CDD:188646"
     Site            order(59,61,63,103..105,129,137,142,147..150,159,161,
                     180..181,195)
                     /site_type="other"
                     /note="intersubunit interface [polypeptide binding]"
                     /db_xref="CDD:188646"
     Site            218
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:188646"
     CDS             1..318
                     /gene="DERA"
                     /coded_by="XM_054051690.1:23..979"
                     /db_xref="GeneID:104067844"
ORIGIN      
        1 magrnpgvsl elgwiskvhv nrpavvrhae qikkwrtvkg nwqaawllka vtcidlttls
       61 gddtpsnvhr lcfkakhpir edllkaldmh dkgitvgavc vyparvtdav nalkaagcni
      121 pvasvaagfp sgqtpletkl aeiklaveyg areidivisr slvlsgqweg lyeeirqcre
      181 vcgeahmkti latgelgsld nvyrasmiam magsdfikts tgkevenatf pvgvvmmrai
      241 reyywqtgnk vgfkpaggir takeaitwlm lvkeelgvew ltpelfrlga ssllgdiekq
      301 ifyhvtgsya lqhdlata
//
LOCUS       XP_053907791             567 aa            linear   VRT 09-MAR-2023
DEFINITION  leiomodin-2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053907791
VERSION     XP_053907791.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051816.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..567
                     /product="leiomodin-2 isoform X1"
                     /calculated_mol_wt=63870
     Region          6..>85
                     /region_name="Tropomodulin"
                     /note="pfam03250"
                     /db_xref="CDD:460862"
     Region          <229..>338
                     /region_name="RNA1"
                     /note="Ran GTPase-activating protein (RanGAP) involved in
                     mRNA processing and transport [Translation, ribosomal
                     structure and biogenesis]; COG5238"
                     /db_xref="CDD:444072"
     CDS             1..567
                     /gene="LMOD2"
                     /coded_by="XM_054051816.1:230..1933"
                     /db_xref="GeneID:104061615"
ORIGIN      
        1 mstfgyrrel skyedidede llaslteeel kelereledi epdrnlpvgq rqksltektp
       61 tgtfsrealm ayweretrkl lekerlgacd kdseqeddns ediqeecfte snsevseeac
      121 teedddeeed deededdsdd eeeekqdaaa gespeddrss dhirrkkcng tkdnenllng
      181 hdgkdfdnls lkssaihpcg nptviedale kvrsndpdtt evnlnnieni tsqmlvqfsq
      241 alrdntvvks fslanthadd nvaiaiagml kvnqhitsln iesnfitgkg vlaimralqn
      301 nkvltelrfh nqrhimgsqv emdivkllke nttlvklgyh fdlagprmsm tsiltrnmdk
      361 qrqkrmqeqr qqepgcdgpi naktkvmqkg tprsspyvsp ksspwsspkl skkappvksq
      421 ppapappppp pppppppppp pppvipekkv ptrniaevik qqersrkdlq ngqkkkkgkk
      481 skkhensilk eikdslrsvs drkseegsrp strpstpqrs lhdnlmeair assikqlrrv
      541 skrfsfstdc gsdtaqalli liyiyiq
//
LOCUS       XP_053907868             560 aa            linear   VRT 09-MAR-2023
DEFINITION  leiomodin-2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053907868
VERSION     XP_053907868.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051893.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..560
                     /product="leiomodin-2 isoform X2"
                     /calculated_mol_wt=63187
     Region          6..>85
                     /region_name="Tropomodulin"
                     /note="pfam03250"
                     /db_xref="CDD:460862"
     Region          <229..>338
                     /region_name="RNA1"
                     /note="Ran GTPase-activating protein (RanGAP) involved in
                     mRNA processing and transport [Translation, ribosomal
                     structure and biogenesis]; COG5238"
                     /db_xref="CDD:444072"
     CDS             1..560
                     /gene="LMOD2"
                     /coded_by="XM_054051893.1:231..1913"
                     /db_xref="GeneID:104061615"
ORIGIN      
        1 mstfgyrrel skyedidede llaslteeel kelereledi epdrnlpvgq rqksltektp
       61 tgtfsrealm ayweretrkl lekerlgacd kdseqeddns ediqeecfte snsevseeac
      121 teedddeeed deededdsdd eeeekqdaaa gespeddrss dhirrkkcng tkdnenllng
      181 hdgkdfdnls lkssaihpcg nptviedale kvrsndpdtt evnlnnieni tsqmlvqfsq
      241 alrdntvvks fslanthadd nvaiaiagml kvnqhitsln iesnfitgkg vlaimralqn
      301 nkvltelrfh nqrhimgsqv emdivkllke nttlvklgyh fdlagprmsm tsiltrnmdk
      361 qrqkrmqeqr qqepgcdgpi naktkvmqkg tprsspyvsp ksspwsspkl skkappvksq
      421 ppapappppp pppppppppp pppvipekkv ptrniaevik qqersrkdlq ngqkkkkgkk
      481 skkhensilk eikdslrsvs drkseegsrp strpstpqrs lhdnlmeair assikqlrrv
      541 lernsencal harrksttkr
//
LOCUS       XP_009561864             547 aa            linear   VRT 09-MAR-2023
DEFINITION  leiomodin-2 isoform X3 [Cuculus canorus].
ACCESSION   XP_009561864
VERSION     XP_009561864.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563569.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561864.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..547
                     /product="leiomodin-2 isoform X3"
                     /calculated_mol_wt=61629
     Region          6..>85
                     /region_name="Tropomodulin"
                     /note="pfam03250"
                     /db_xref="CDD:460862"
     Region          <229..>338
                     /region_name="RNA1"
                     /note="Ran GTPase-activating protein (RanGAP) involved in
                     mRNA processing and transport [Translation, ribosomal
                     structure and biogenesis]; COG5238"
                     /db_xref="CDD:444072"
     CDS             1..547
                     /gene="LMOD2"
                     /coded_by="XM_009563569.2:230..1873"
                     /db_xref="GeneID:104061615"
ORIGIN      
        1 mstfgyrrel skyedidede llaslteeel kelereledi epdrnlpvgq rqksltektp
       61 tgtfsrealm ayweretrkl lekerlgacd kdseqeddns ediqeecfte snsevseeac
      121 teedddeeed deededdsdd eeeekqdaaa gespeddrss dhirrkkcng tkdnenllng
      181 hdgkdfdnls lkssaihpcg nptviedale kvrsndpdtt evnlnnieni tsqmlvqfsq
      241 alrdntvvks fslanthadd nvaiaiagml kvnqhitsln iesnfitgkg vlaimralqn
      301 nkvltelrfh nqrhimgsqv emdivkllke nttlvklgyh fdlagprmsm tsiltrnmdk
      361 qrqkrmqeqr qqepgcdgpi naktkvmqkg tprsspyvsp ksspwsspkl skkappvksq
      421 ppapappppp pppppppppp pppvipekkv ptrniaevik qqersrkdlq ngqkkkkgkk
      481 skkhensilk eikdslrsvs drkseegsrp strpstpqrs lhdnlmeair assikqlrrv
      541 evpealr
//
LOCUS       XP_053908056             512 aa            linear   VRT 09-MAR-2023
DEFINITION  actin nucleation-promoting factor WASL isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053908056
VERSION     XP_053908056.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052081.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..512
                     /product="actin nucleation-promoting factor WASL isoform
                     X1"
                     /calculated_mol_wt=55565
     Region          41..139
                     /region_name="EVH1_WASP-like"
                     /note="WASP family proteins EVH1 domain; cd01205"
                     /db_xref="CDD:269916"
     Site            order(41,43,48,52,67,69,76,78,80,93,105,113,119)
                     /site_type="other"
                     /note="WAS mutation hotspots"
                     /db_xref="CDD:269916"
     Site            order(50,52,58,108,110)
                     /site_type="other"
                     /note="proline-rich peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:269916"
     Region          203..260
                     /region_name="PBD"
                     /note="P21-Rho-binding domain; pfam00786"
                     /db_xref="CDD:395634"
     Site            order(204,207,210,212,215,233,237)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238077"
     Region          409..435
                     /region_name="WH2_N-WASP_r1"
                     /note="first tandem Wiskott Aldrich syndrome homology
                     region 2 (WH2 motif) repeat found in human Neural
                     Wiskott-Aldrich syndrome protein (N-WASP) and related
                     domains; cd22074"
                     /db_xref="CDD:409217"
     Site            order(412..413,415..417,419..421,426..429)
                     /site_type="other"
                     /note="actin-binding motif [polypeptide binding]"
                     /db_xref="CDD:409217"
     Region          426..429
                     /region_name="actin-binding sequence"
                     /note="actin-binding sequence [structural motif]"
                     /db_xref="CDD:409217"
     Region          436..460
                     /region_name="WH2_hN-WASP_r2_like"
                     /note="second tandem Wiskott Aldrich syndrome homology
                     region 2 (WH2 motif) repeat found in human Neural
                     Wiskott-Aldrich syndrome protein (N-WASP) and related
                     domains; cd22075"
                     /db_xref="CDD:409218"
     Site            order(441,443..445,447..449,452,454..456)
                     /site_type="other"
                     /note="actin-binding motif [polypeptide binding]"
                     /db_xref="CDD:409218"
     CDS             1..512
                     /gene="WASL"
                     /coded_by="XM_054052081.1:237..1775"
                     /db_xref="GeneID:104061614"
ORIGIN      
        1 msgnpqqqpp qprrvtnvgs llltpqenes lfgflgkkcv tmssavvqiy tadrnamwsk
       61 kccgvaclvk dnpqrsyfir ifdikdgkll weqelynnfv ynsprgyfht fagdtcqvgl
      121 nfaneeeakv frktvtdllg rrqrksekrr dppngpnlpm atvdiknpei ttnrfytpqv
      181 nnisytkekk kgktkkrrlt kadigtpsnf qhighvgwdp ntgfdvnnld pelknlfdlc
      241 giseaqlkdk etskviydfi ektggveavk nelrrqgppr wnappppppc rggppppppp
      301 pphssgpppp pargrgappp ppsraptaap pppppsrpga avpppppnrm ypppppvhss
      361 sapsgppppp pppasgssvp pppppppppp gpppppglps evdhqlpvpa gnkaalldqi
      421 regaqlkkve qnsrpvscsg rdalldqirq giqlksvsdg qesapptpap tsgivgalme
      481 vmqkrskaih ssdededede eedfedddew dd
//
LOCUS       XP_053908118             506 aa            linear   VRT 09-MAR-2023
DEFINITION  actin nucleation-promoting factor WASL isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053908118
VERSION     XP_053908118.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052143.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..506
                     /product="actin nucleation-promoting factor WASL isoform
                     X2"
                     /calculated_mol_wt=54857
     Region          41..139
                     /region_name="EVH1_WASP-like"
                     /note="WASP family proteins EVH1 domain; cd01205"
                     /db_xref="CDD:269916"
     Site            order(41,43,48,52,67,69,76,78,80,93,105,113,119)
                     /site_type="other"
                     /note="WAS mutation hotspots"
                     /db_xref="CDD:269916"
     Site            order(50,52,58,108,110)
                     /site_type="other"
                     /note="proline-rich peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:269916"
     Region          203..260
                     /region_name="PBD"
                     /note="P21-Rho-binding domain; pfam00786"
                     /db_xref="CDD:395634"
     Site            order(204,207,210,212,215,233,237)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238077"
     Region          403..429
                     /region_name="WH2_N-WASP_r1"
                     /note="first tandem Wiskott Aldrich syndrome homology
                     region 2 (WH2 motif) repeat found in human Neural
                     Wiskott-Aldrich syndrome protein (N-WASP) and related
                     domains; cd22074"
                     /db_xref="CDD:409217"
     Site            order(406..407,409..411,413..415,420..423)
                     /site_type="other"
                     /note="actin-binding motif [polypeptide binding]"
                     /db_xref="CDD:409217"
     Region          420..423
                     /region_name="actin-binding sequence"
                     /note="actin-binding sequence [structural motif]"
                     /db_xref="CDD:409217"
     Region          430..454
                     /region_name="WH2_hN-WASP_r2_like"
                     /note="second tandem Wiskott Aldrich syndrome homology
                     region 2 (WH2 motif) repeat found in human Neural
                     Wiskott-Aldrich syndrome protein (N-WASP) and related
                     domains; cd22075"
                     /db_xref="CDD:409218"
     Site            order(435,437..439,441..443,446,448..450)
                     /site_type="other"
                     /note="actin-binding motif [polypeptide binding]"
                     /db_xref="CDD:409218"
     CDS             1..506
                     /gene="WASL"
                     /coded_by="XM_054052143.1:235..1755"
                     /db_xref="GeneID:104061614"
ORIGIN      
        1 msgnpqqqpp qprrvtnvgs llltpqenes lfgflgkkcv tmssavvqiy tadrnamwsk
       61 kccgvaclvk dnpqrsyfir ifdikdgkll weqelynnfv ynsprgyfht fagdtcqvgl
      121 nfaneeeakv frktvtdllg rrqrksekrr dppngpnlpm atvdiknpei ttnrfytpqv
      181 nnisytkekk kgktkkrrlt kadigtpsnf qhighvgwdp ntgfdvnnld pelknlfdlc
      241 giseaqlkdk etskviydfi ektggveavk nelrrqappp pppcrggppp pppppphssg
      301 pppppargrg apppppsrap taapppppps rpgaavpppp pnrmyppppp vhsssapsgp
      361 pppppppasg ssvppppppp ppppgppppp glpsevdhql pvpagnkaal ldqiregaql
      421 kkveqnsrpv scsgrdalld qirqgiqlks vsdgqesapp tpaptsgivg almevmqkrs
      481 kaihssdede dedeeedfed ddewdd
//
LOCUS       XP_053908182             450 aa            linear   VRT 09-MAR-2023
DEFINITION  actin nucleation-promoting factor WASL isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053908182
VERSION     XP_053908182.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052207.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..450
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..450
                     /product="actin nucleation-promoting factor WASL isoform
                     X3"
                     /calculated_mol_wt=47822
     Region          141..198
                     /region_name="PBD"
                     /note="P21-Rho-binding domain; pfam00786"
                     /db_xref="CDD:395634"
     Site            order(142,145,148,150,153,171,175)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238077"
     Region          347..373
                     /region_name="WH2_N-WASP_r1"
                     /note="first tandem Wiskott Aldrich syndrome homology
                     region 2 (WH2 motif) repeat found in human Neural
                     Wiskott-Aldrich syndrome protein (N-WASP) and related
                     domains; cd22074"
                     /db_xref="CDD:409217"
     Site            order(350..351,353..355,357..359,364..367)
                     /site_type="other"
                     /note="actin-binding motif [polypeptide binding]"
                     /db_xref="CDD:409217"
     Region          364..367
                     /region_name="actin-binding sequence"
                     /note="actin-binding sequence [structural motif]"
                     /db_xref="CDD:409217"
     Region          374..398
                     /region_name="WH2_hN-WASP_r2_like"
                     /note="second tandem Wiskott Aldrich syndrome homology
                     region 2 (WH2 motif) repeat found in human Neural
                     Wiskott-Aldrich syndrome protein (N-WASP) and related
                     domains; cd22075"
                     /db_xref="CDD:409218"
     Site            order(379,381..383,385..387,390,392..394)
                     /site_type="other"
                     /note="actin-binding motif [polypeptide binding]"
                     /db_xref="CDD:409218"
     CDS             1..450
                     /gene="WASL"
                     /coded_by="XM_054052207.1:239..1591"
                     /db_xref="GeneID:104061614"
ORIGIN      
        1 mfcttfsgas segvtdidns gclgplycqv lpndelyvpl sssfielstp dgegaclmmg
       61 killdinmav leeynsfqgs fvprghlrsk pdgpnlpmat vdiknpeitt nrfytpqvnn
      121 isytkekkkg ktkkrrltka digtpsnfqh ighvgwdpnt gfdvnnldpe lknlfdlcgi
      181 seaqlkdket skviydfiek tggveavkne lrrqgpprwn appppppcrg gppppppppp
      241 hssgpppppa rgrgappppp sraptaappp pppsrpgaav pppppnrmyp ppppvhsssa
      301 psgppppppp pasgssvppp ppppppppgp ppppglpsev dhqlpvpagn kaalldqire
      361 gaqlkkveqn srpvscsgrd alldqirqgi qlksvsdgqe sapptpapts givgalmevm
      421 qkrskaihss dedededeee dfedddewdd
//
LOCUS       XP_053908297            2325 aa            linear   VRT 09-MAR-2023
DEFINITION  F-actin-monooxygenase MICAL3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053908297
VERSION     XP_053908297.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052322.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2325
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2325
                     /product="F-actin-monooxygenase MICAL3 isoform X1"
                     /calculated_mol_wt=261532
     Region          86..>226
                     /region_name="UbiH"
                     /note="2-polyprenyl-6-methoxyphenol hydroxylase and
                     related FAD-dependent oxidoreductases [Coenzyme transport
                     and metabolism, Energy production and conversion];
                     COG0654"
                     /db_xref="CDD:440419"
     Region          514..624
                     /region_name="CH_MICAL3"
                     /note="calponin homology (CH) domain found in molecule
                     interacting with CasL protein 3; cd21251"
                     /db_xref="CDD:409100"
     Site            order(519,523,573,575..576,579..580,582,591..599,607,
                     609..610,612..613,616..617,620)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409100"
     Region          951..1005
                     /region_name="LIM_Mical"
                     /note="The LIM domain of Mical (molecule interacting with
                     CasL); cd09439"
                     /db_xref="CDD:188823"
     Site            order(951,954,972,975,978,981,1001,1004)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188823"
     Region          <1254..1600
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     Region          2141..2311
                     /region_name="bMERB_dom"
                     /note="Bivalent Mical/EHBP Rab binding domain; pfam12130"
                     /db_xref="CDD:463467"
     CDS             1..2325
                     /gene="MICAL3"
                     /coded_by="XM_054052322.1:297..7274"
                     /db_xref="GeneID:104055894"
ORIGIN      
        1 meesknekvn qahvlfdkfv qastckgtlk afqelcdyle lkpkdyrsfy hklksklnyw
       61 kakalwakld krgshkdykk gkacantkcl iigagpcglr taidlsflga kvvviekrda
      121 fsrnnvlhlw pftihdlrgl gakkfygkfc agsidhisir qlqlillkva lilgieihvn
      181 vefqglvypp edqenerigw ralvhpkthp vseyefevii ggdgrrntle gfrrkefrgk
      241 laiaitanfi nrnttaeakv eeisgvafif nqkffqdlre atgidleniv yykddthyfv
      301 mtakkqslle kgvirhdyad telllsrenv dqeallnyar eaadfstnqq lpsldfainh
      361 ygqpdvamfd ftcmyasena alvreqnghq llvalvgdsl lepfwpmgtg iargflaamd
      421 sawmvrswsl gasplevlae resiyrllpq ttpenvsknf shysidpatr ypninvnflr
      481 pqqvrhlynt gdlkdihlei enfvnsrtpk ltrnesvars skllswcqrq tdgyagvnvt
      541 dltmswksgl alcaiihryr pdlidfdsld ehdvernnql afdiaekefg ispimtgkem
      601 asvgepdkls mvmyltqfye mfkdtipssd tldlnaeeka aliastkspi sflsklgqsi
      661 srkrtpkdkk ekeldgagkr rktsqseded iprsyreerp tlvsalterr idaavgnqnk
      721 vksmatqlla kfeenapvqs stlrrqqpvl pyqervhnqp ssrreqgrla pipqwkqmri
      781 kersrtcpkk vimlsstpps sppyprqqrn repdancpge qsprqerrsp rlfsddqvpe
      841 nveqracqla alresrpavr hqpetepsrr ffvdqwelsl slrssnrpss pssdslrqky
      901 ikmytggvss laeqianqlq rkeqpktlld kkelgslkke fpqnlggsdv cyfcrkrvyv
      961 merlsaegkf fhrscfkcey cattlrlssy aydiedgkfy ckphycyrls gyaqrkrpav
     1021 gplsgkdtkg plqdamasdg sgrantipts aerapgsnvn gleepslakr lrgtperiel
     1081 enyrlslqre eeleevpeet laehnlssvl dkgteedvps sssesemeee deeeddelll
     1141 pqqppsdlgg vpwkeavrih allkgkseee ieaeenheig dkedeeeeee eddeeeedee
     1201 sseegeycpw eselqqglwl qrlsneedtg tfkagnlrlq qivnpvdple iladvhwthi
     1261 rekeeeekmv ptsksstsra sdlpsvrhea vqawletvpg apcedndved elgtepadte
     1321 gqageegdtg aelddddips daeaefrlhq vgigepelkv sedeedeegt egascsvted
     1381 pckpsipiqs pndsvlplsp adspkakqae aakdwlaevs naikspearf fpepfildeg
     1441 pkdetprdrk vksplvppsp vlsqpvaspe avmptsltes qpaastlass ptsaqtpics
     1501 qplpsaetsi pspveppvcf qpvpaltstp laklvlrsqs sevkklgspt taeealkrsn
     1561 lveefwmksa eirrslgltp vdrnkcsetn ftvsalettp mktfnsenvs gderihlvkp
     1621 qpaprrqgls kleneqisll tpkspsekel kssnevrrdv ssssglglqe sssnmrtmas
     1681 qsfntsdstm ltppsspppp ppqdeepatl rrkrhqavwq neiearsppt pastppaptr
     1741 hqstsaares aqakkddvrk sfaesvdeip faddvedtyd drtedsslhe kfftpptsrp
     1801 rpekplllpl vkenggppsm eggvnqkkrv lpeisveake laeermrare ksvksqalrd
     1861 amakqlckmk dmemaaaaaa ggtrarkass vplktkelfy espkylglkm aegstlkhda
     1921 asekfstpaa dvagpegsvt ssegssgksk krtslfsprk nkkekksknd srlsdkssgg
     1981 teeatkprsl wksvfsgykk dkkkktddks cpstpsssat vdsgkhkasp lvtaadlqlr
     2041 qhlsfsedsd lssddvlers sqksrrepfh ekfcifqemq knesiyvpha lafkrsyssk
     2101 rayteeelna kltrrvqkaa rrqakqeelk rlhraqiiqr qleqveekqr qleergvave
     2161 kalrgeadyw gesyysdlid lhlgvepnag tprrrplsfc pccahegmgk kddpklmqew
     2221 fklvqeknal vryeselmif areleledrq srlqqelrer mavedhlktd eelseekril
     2281 nemlevveqr dslvalleeq rlrekeedkd leavmlskgf slnws
//
LOCUS       XP_053908377            2325 aa            linear   VRT 09-MAR-2023
DEFINITION  F-actin-monooxygenase MICAL3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053908377
VERSION     XP_053908377.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052402.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2325
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2325
                     /product="F-actin-monooxygenase MICAL3 isoform X1"
                     /calculated_mol_wt=261532
     Region          86..>226
                     /region_name="UbiH"
                     /note="2-polyprenyl-6-methoxyphenol hydroxylase and
                     related FAD-dependent oxidoreductases [Coenzyme transport
                     and metabolism, Energy production and conversion];
                     COG0654"
                     /db_xref="CDD:440419"
     Region          514..624
                     /region_name="CH_MICAL3"
                     /note="calponin homology (CH) domain found in molecule
                     interacting with CasL protein 3; cd21251"
                     /db_xref="CDD:409100"
     Site            order(519,523,573,575..576,579..580,582,591..599,607,
                     609..610,612..613,616..617,620)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409100"
     Region          951..1005
                     /region_name="LIM_Mical"
                     /note="The LIM domain of Mical (molecule interacting with
                     CasL); cd09439"
                     /db_xref="CDD:188823"
     Site            order(951,954,972,975,978,981,1001,1004)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188823"
     Region          <1254..1600
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     Region          2141..2311
                     /region_name="bMERB_dom"
                     /note="Bivalent Mical/EHBP Rab binding domain; pfam12130"
                     /db_xref="CDD:463467"
     CDS             1..2325
                     /gene="MICAL3"
                     /coded_by="XM_054052402.1:365..7342"
                     /db_xref="GeneID:104055894"
ORIGIN      
        1 meesknekvn qahvlfdkfv qastckgtlk afqelcdyle lkpkdyrsfy hklksklnyw
       61 kakalwakld krgshkdykk gkacantkcl iigagpcglr taidlsflga kvvviekrda
      121 fsrnnvlhlw pftihdlrgl gakkfygkfc agsidhisir qlqlillkva lilgieihvn
      181 vefqglvypp edqenerigw ralvhpkthp vseyefevii ggdgrrntle gfrrkefrgk
      241 laiaitanfi nrnttaeakv eeisgvafif nqkffqdlre atgidleniv yykddthyfv
      301 mtakkqslle kgvirhdyad telllsrenv dqeallnyar eaadfstnqq lpsldfainh
      361 ygqpdvamfd ftcmyasena alvreqnghq llvalvgdsl lepfwpmgtg iargflaamd
      421 sawmvrswsl gasplevlae resiyrllpq ttpenvsknf shysidpatr ypninvnflr
      481 pqqvrhlynt gdlkdihlei enfvnsrtpk ltrnesvars skllswcqrq tdgyagvnvt
      541 dltmswksgl alcaiihryr pdlidfdsld ehdvernnql afdiaekefg ispimtgkem
      601 asvgepdkls mvmyltqfye mfkdtipssd tldlnaeeka aliastkspi sflsklgqsi
      661 srkrtpkdkk ekeldgagkr rktsqseded iprsyreerp tlvsalterr idaavgnqnk
      721 vksmatqlla kfeenapvqs stlrrqqpvl pyqervhnqp ssrreqgrla pipqwkqmri
      781 kersrtcpkk vimlsstpps sppyprqqrn repdancpge qsprqerrsp rlfsddqvpe
      841 nveqracqla alresrpavr hqpetepsrr ffvdqwelsl slrssnrpss pssdslrqky
      901 ikmytggvss laeqianqlq rkeqpktlld kkelgslkke fpqnlggsdv cyfcrkrvyv
      961 merlsaegkf fhrscfkcey cattlrlssy aydiedgkfy ckphycyrls gyaqrkrpav
     1021 gplsgkdtkg plqdamasdg sgrantipts aerapgsnvn gleepslakr lrgtperiel
     1081 enyrlslqre eeleevpeet laehnlssvl dkgteedvps sssesemeee deeeddelll
     1141 pqqppsdlgg vpwkeavrih allkgkseee ieaeenheig dkedeeeeee eddeeeedee
     1201 sseegeycpw eselqqglwl qrlsneedtg tfkagnlrlq qivnpvdple iladvhwthi
     1261 rekeeeekmv ptsksstsra sdlpsvrhea vqawletvpg apcedndved elgtepadte
     1321 gqageegdtg aelddddips daeaefrlhq vgigepelkv sedeedeegt egascsvted
     1381 pckpsipiqs pndsvlplsp adspkakqae aakdwlaevs naikspearf fpepfildeg
     1441 pkdetprdrk vksplvppsp vlsqpvaspe avmptsltes qpaastlass ptsaqtpics
     1501 qplpsaetsi pspveppvcf qpvpaltstp laklvlrsqs sevkklgspt taeealkrsn
     1561 lveefwmksa eirrslgltp vdrnkcsetn ftvsalettp mktfnsenvs gderihlvkp
     1621 qpaprrqgls kleneqisll tpkspsekel kssnevrrdv ssssglglqe sssnmrtmas
     1681 qsfntsdstm ltppsspppp ppqdeepatl rrkrhqavwq neiearsppt pastppaptr
     1741 hqstsaares aqakkddvrk sfaesvdeip faddvedtyd drtedsslhe kfftpptsrp
     1801 rpekplllpl vkenggppsm eggvnqkkrv lpeisveake laeermrare ksvksqalrd
     1861 amakqlckmk dmemaaaaaa ggtrarkass vplktkelfy espkylglkm aegstlkhda
     1921 asekfstpaa dvagpegsvt ssegssgksk krtslfsprk nkkekksknd srlsdkssgg
     1981 teeatkprsl wksvfsgykk dkkkktddks cpstpsssat vdsgkhkasp lvtaadlqlr
     2041 qhlsfsedsd lssddvlers sqksrrepfh ekfcifqemq knesiyvpha lafkrsyssk
     2101 rayteeelna kltrrvqkaa rrqakqeelk rlhraqiiqr qleqveekqr qleergvave
     2161 kalrgeadyw gesyysdlid lhlgvepnag tprrrplsfc pccahegmgk kddpklmqew
     2221 fklvqeknal vryeselmif areleledrq srlqqelrer mavedhlktd eelseekril
     2281 nemlevveqr dslvalleeq rlrekeedkd leavmlskgf slnws
//
LOCUS       XP_053908444            2325 aa            linear   VRT 09-MAR-2023
DEFINITION  F-actin-monooxygenase MICAL3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053908444
VERSION     XP_053908444.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052469.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2325
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2325
                     /product="F-actin-monooxygenase MICAL3 isoform X1"
                     /calculated_mol_wt=261532
     Region          86..>226
                     /region_name="UbiH"
                     /note="2-polyprenyl-6-methoxyphenol hydroxylase and
                     related FAD-dependent oxidoreductases [Coenzyme transport
                     and metabolism, Energy production and conversion];
                     COG0654"
                     /db_xref="CDD:440419"
     Region          514..624
                     /region_name="CH_MICAL3"
                     /note="calponin homology (CH) domain found in molecule
                     interacting with CasL protein 3; cd21251"
                     /db_xref="CDD:409100"
     Site            order(519,523,573,575..576,579..580,582,591..599,607,
                     609..610,612..613,616..617,620)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409100"
     Region          951..1005
                     /region_name="LIM_Mical"
                     /note="The LIM domain of Mical (molecule interacting with
                     CasL); cd09439"
                     /db_xref="CDD:188823"
     Site            order(951,954,972,975,978,981,1001,1004)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188823"
     Region          <1254..1600
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     Region          2141..2311
                     /region_name="bMERB_dom"
                     /note="Bivalent Mical/EHBP Rab binding domain; pfam12130"
                     /db_xref="CDD:463467"
     CDS             1..2325
                     /gene="MICAL3"
                     /coded_by="XM_054052469.1:303..7280"
                     /db_xref="GeneID:104055894"
ORIGIN      
        1 meesknekvn qahvlfdkfv qastckgtlk afqelcdyle lkpkdyrsfy hklksklnyw
       61 kakalwakld krgshkdykk gkacantkcl iigagpcglr taidlsflga kvvviekrda
      121 fsrnnvlhlw pftihdlrgl gakkfygkfc agsidhisir qlqlillkva lilgieihvn
      181 vefqglvypp edqenerigw ralvhpkthp vseyefevii ggdgrrntle gfrrkefrgk
      241 laiaitanfi nrnttaeakv eeisgvafif nqkffqdlre atgidleniv yykddthyfv
      301 mtakkqslle kgvirhdyad telllsrenv dqeallnyar eaadfstnqq lpsldfainh
      361 ygqpdvamfd ftcmyasena alvreqnghq llvalvgdsl lepfwpmgtg iargflaamd
      421 sawmvrswsl gasplevlae resiyrllpq ttpenvsknf shysidpatr ypninvnflr
      481 pqqvrhlynt gdlkdihlei enfvnsrtpk ltrnesvars skllswcqrq tdgyagvnvt
      541 dltmswksgl alcaiihryr pdlidfdsld ehdvernnql afdiaekefg ispimtgkem
      601 asvgepdkls mvmyltqfye mfkdtipssd tldlnaeeka aliastkspi sflsklgqsi
      661 srkrtpkdkk ekeldgagkr rktsqseded iprsyreerp tlvsalterr idaavgnqnk
      721 vksmatqlla kfeenapvqs stlrrqqpvl pyqervhnqp ssrreqgrla pipqwkqmri
      781 kersrtcpkk vimlsstpps sppyprqqrn repdancpge qsprqerrsp rlfsddqvpe
      841 nveqracqla alresrpavr hqpetepsrr ffvdqwelsl slrssnrpss pssdslrqky
      901 ikmytggvss laeqianqlq rkeqpktlld kkelgslkke fpqnlggsdv cyfcrkrvyv
      961 merlsaegkf fhrscfkcey cattlrlssy aydiedgkfy ckphycyrls gyaqrkrpav
     1021 gplsgkdtkg plqdamasdg sgrantipts aerapgsnvn gleepslakr lrgtperiel
     1081 enyrlslqre eeleevpeet laehnlssvl dkgteedvps sssesemeee deeeddelll
     1141 pqqppsdlgg vpwkeavrih allkgkseee ieaeenheig dkedeeeeee eddeeeedee
     1201 sseegeycpw eselqqglwl qrlsneedtg tfkagnlrlq qivnpvdple iladvhwthi
     1261 rekeeeekmv ptsksstsra sdlpsvrhea vqawletvpg apcedndved elgtepadte
     1321 gqageegdtg aelddddips daeaefrlhq vgigepelkv sedeedeegt egascsvted
     1381 pckpsipiqs pndsvlplsp adspkakqae aakdwlaevs naikspearf fpepfildeg
     1441 pkdetprdrk vksplvppsp vlsqpvaspe avmptsltes qpaastlass ptsaqtpics
     1501 qplpsaetsi pspveppvcf qpvpaltstp laklvlrsqs sevkklgspt taeealkrsn
     1561 lveefwmksa eirrslgltp vdrnkcsetn ftvsalettp mktfnsenvs gderihlvkp
     1621 qpaprrqgls kleneqisll tpkspsekel kssnevrrdv ssssglglqe sssnmrtmas
     1681 qsfntsdstm ltppsspppp ppqdeepatl rrkrhqavwq neiearsppt pastppaptr
     1741 hqstsaares aqakkddvrk sfaesvdeip faddvedtyd drtedsslhe kfftpptsrp
     1801 rpekplllpl vkenggppsm eggvnqkkrv lpeisveake laeermrare ksvksqalrd
     1861 amakqlckmk dmemaaaaaa ggtrarkass vplktkelfy espkylglkm aegstlkhda
     1921 asekfstpaa dvagpegsvt ssegssgksk krtslfsprk nkkekksknd srlsdkssgg
     1981 teeatkprsl wksvfsgykk dkkkktddks cpstpsssat vdsgkhkasp lvtaadlqlr
     2041 qhlsfsedsd lssddvlers sqksrrepfh ekfcifqemq knesiyvpha lafkrsyssk
     2101 rayteeelna kltrrvqkaa rrqakqeelk rlhraqiiqr qleqveekqr qleergvave
     2161 kalrgeadyw gesyysdlid lhlgvepnag tprrrplsfc pccahegmgk kddpklmqew
     2221 fklvqeknal vryeselmif areleledrq srlqqelrer mavedhlktd eelseekril
     2281 nemlevveqr dslvalleeq rlrekeedkd leavmlskgf slnws
//
LOCUS       XP_053908523            2324 aa            linear   VRT 09-MAR-2023
DEFINITION  F-actin-monooxygenase MICAL3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053908523
VERSION     XP_053908523.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052548.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2324
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2324
                     /product="F-actin-monooxygenase MICAL3 isoform X2"
                     /calculated_mol_wt=261445
     Region          86..>226
                     /region_name="UbiH"
                     /note="2-polyprenyl-6-methoxyphenol hydroxylase and
                     related FAD-dependent oxidoreductases [Coenzyme transport
                     and metabolism, Energy production and conversion];
                     COG0654"
                     /db_xref="CDD:440419"
     Region          514..624
                     /region_name="CH_MICAL3"
                     /note="calponin homology (CH) domain found in molecule
                     interacting with CasL protein 3; cd21251"
                     /db_xref="CDD:409100"
     Site            order(519,523,573,575..576,579..580,582,591..599,607,
                     609..610,612..613,616..617,620)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409100"
     Region          951..1005
                     /region_name="LIM_Mical"
                     /note="The LIM domain of Mical (molecule interacting with
                     CasL); cd09439"
                     /db_xref="CDD:188823"
     Site            order(951,954,972,975,978,981,1001,1004)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188823"
     Region          <1253..1599
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     Region          2140..2310
                     /region_name="bMERB_dom"
                     /note="Bivalent Mical/EHBP Rab binding domain; pfam12130"
                     /db_xref="CDD:463467"
     CDS             1..2324
                     /gene="MICAL3"
                     /coded_by="XM_054052548.1:297..7271"
                     /db_xref="GeneID:104055894"
ORIGIN      
        1 meesknekvn qahvlfdkfv qastckgtlk afqelcdyle lkpkdyrsfy hklksklnyw
       61 kakalwakld krgshkdykk gkacantkcl iigagpcglr taidlsflga kvvviekrda
      121 fsrnnvlhlw pftihdlrgl gakkfygkfc agsidhisir qlqlillkva lilgieihvn
      181 vefqglvypp edqenerigw ralvhpkthp vseyefevii ggdgrrntle gfrrkefrgk
      241 laiaitanfi nrnttaeakv eeisgvafif nqkffqdlre atgidleniv yykddthyfv
      301 mtakkqslle kgvirhdyad telllsrenv dqeallnyar eaadfstnqq lpsldfainh
      361 ygqpdvamfd ftcmyasena alvreqnghq llvalvgdsl lepfwpmgtg iargflaamd
      421 sawmvrswsl gasplevlae resiyrllpq ttpenvsknf shysidpatr ypninvnflr
      481 pqqvrhlynt gdlkdihlei enfvnsrtpk ltrnesvars skllswcqrq tdgyagvnvt
      541 dltmswksgl alcaiihryr pdlidfdsld ehdvernnql afdiaekefg ispimtgkem
      601 asvgepdkls mvmyltqfye mfkdtipssd tldlnaeeka aliastkspi sflsklgqsi
      661 srkrtpkdkk ekeldgagkr rktsqseded iprsyreerp tlvsalterr idaavgnqnk
      721 vksmatqlla kfeenapvqs stlrrqqpvl pyqervhnqp ssrreqgrla pipqwkqmri
      781 kersrtcpkk vimlsstpps sppyprqqrn repdancpge qsprqerrsp rlfsddqvpe
      841 nveqracqla alresrpavr hqpetepsrr ffvdqwelsl slrssnrpss pssdslrqky
      901 ikmytggvss laeqianqlq rkeqpktlld kkelgslkke fpqnlggsdv cyfcrkrvyv
      961 merlsaegkf fhrscfkcey cattlrlssy aydiedgkfy ckphycyrls gyaqrkrpav
     1021 gplsgkdtkg plqdamasdg sgrantipts aerapgsnvn gleepslakr lrgtperiel
     1081 enyrlslqre eeleevpeet laehnlssvl dkgteedvps ssesemeeed eeeddelllp
     1141 qqppsdlggv pwkeavriha llkgkseeei eaeenheigd kedeeeeeee ddeeeedees
     1201 seegeycpwe selqqglwlq rlsneedtgt fkagnlrlqq ivnpvdplei ladvhwthir
     1261 ekeeeekmvp tsksstsras dlpsvrheav qawletvpga pcedndvede lgtepadteg
     1321 qageegdtga elddddipsd aeaefrlhqv gigepelkvs edeedeegte gascsvtedp
     1381 ckpsipiqsp ndsvlplspa dspkakqaea akdwlaevsn aikspearff pepfildegp
     1441 kdetprdrkv ksplvppspv lsqpvaspea vmptsltesq paastlassp tsaqtpicsq
     1501 plpsaetsip spveppvcfq pvpaltstpl aklvlrsqss evkklgsptt aeealkrsnl
     1561 veefwmksae irrslgltpv drnkcsetnf tvsalettpm ktfnsenvsg derihlvkpq
     1621 paprrqglsk leneqisllt pkspsekelk ssnevrrdvs sssglglqes ssnmrtmasq
     1681 sfntsdstml tppssppppp pqdeepatlr rkrhqavwqn eiearspptp astppaptrh
     1741 qstsaaresa qakkddvrks faesvdeipf addvedtydd rtedsslhek fftpptsrpr
     1801 pekplllplv kenggppsme ggvnqkkrvl peisveakel aeermrarek svksqalrda
     1861 makqlckmkd memaaaaaag gtrarkassv plktkelfye spkylglkma egstlkhdaa
     1921 sekfstpaad vagpegsvts segssgkskk rtslfsprkn kkekksknds rlsdkssggt
     1981 eeatkprslw ksvfsgykkd kkkktddksc pstpsssatv dsgkhkaspl vtaadlqlrq
     2041 hlsfsedsdl ssddvlerss qksrrepfhe kfcifqemqk nesiyvphal afkrsysskr
     2101 ayteeelnak ltrrvqkaar rqakqeelkr lhraqiiqrq leqveekqrq leergvavek
     2161 alrgeadywg esyysdlidl hlgvepnagt prrrplsfcp ccahegmgkk ddpklmqewf
     2221 klvqeknalv ryeselmifa releledrqs rlqqelrerm avedhlktde elseekriln
     2281 emlevveqrd slvalleeqr lrekeedkdl eavmlskgfs lnws
//
LOCUS       XP_053908601            2309 aa            linear   VRT 09-MAR-2023
DEFINITION  F-actin-monooxygenase MICAL3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053908601
VERSION     XP_053908601.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052626.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2309
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2309
                     /product="F-actin-monooxygenase MICAL3 isoform X3"
                     /calculated_mol_wt=259494
     Region          86..>226
                     /region_name="UbiH"
                     /note="2-polyprenyl-6-methoxyphenol hydroxylase and
                     related FAD-dependent oxidoreductases [Coenzyme transport
                     and metabolism, Energy production and conversion];
                     COG0654"
                     /db_xref="CDD:440419"
     Region          514..624
                     /region_name="CH_MICAL3"
                     /note="calponin homology (CH) domain found in molecule
                     interacting with CasL protein 3; cd21251"
                     /db_xref="CDD:409100"
     Site            order(519,523,573,575..576,579..580,582,591..599,607,
                     609..610,612..613,616..617,620)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409100"
     Region          951..1005
                     /region_name="LIM_Mical"
                     /note="The LIM domain of Mical (molecule interacting with
                     CasL); cd09439"
                     /db_xref="CDD:188823"
     Site            order(951,954,972,975,978,981,1001,1004)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188823"
     Region          <1254..1600
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     Region          2125..2295
                     /region_name="bMERB_dom"
                     /note="Bivalent Mical/EHBP Rab binding domain; pfam12130"
                     /db_xref="CDD:463467"
     CDS             1..2309
                     /gene="MICAL3"
                     /coded_by="XM_054052626.1:297..7226"
                     /db_xref="GeneID:104055894"
ORIGIN      
        1 meesknekvn qahvlfdkfv qastckgtlk afqelcdyle lkpkdyrsfy hklksklnyw
       61 kakalwakld krgshkdykk gkacantkcl iigagpcglr taidlsflga kvvviekrda
      121 fsrnnvlhlw pftihdlrgl gakkfygkfc agsidhisir qlqlillkva lilgieihvn
      181 vefqglvypp edqenerigw ralvhpkthp vseyefevii ggdgrrntle gfrrkefrgk
      241 laiaitanfi nrnttaeakv eeisgvafif nqkffqdlre atgidleniv yykddthyfv
      301 mtakkqslle kgvirhdyad telllsrenv dqeallnyar eaadfstnqq lpsldfainh
      361 ygqpdvamfd ftcmyasena alvreqnghq llvalvgdsl lepfwpmgtg iargflaamd
      421 sawmvrswsl gasplevlae resiyrllpq ttpenvsknf shysidpatr ypninvnflr
      481 pqqvrhlynt gdlkdihlei enfvnsrtpk ltrnesvars skllswcqrq tdgyagvnvt
      541 dltmswksgl alcaiihryr pdlidfdsld ehdvernnql afdiaekefg ispimtgkem
      601 asvgepdkls mvmyltqfye mfkdtipssd tldlnaeeka aliastkspi sflsklgqsi
      661 srkrtpkdkk ekeldgagkr rktsqseded iprsyreerp tlvsalterr idaavgnqnk
      721 vksmatqlla kfeenapvqs stlrrqqpvl pyqervhnqp ssrreqgrla pipqwkqmri
      781 kersrtcpkk vimlsstpps sppyprqqrn repdancpge qsprqerrsp rlfsddqvpe
      841 nveqracqla alresrpavr hqpetepsrr ffvdqwelsl slrssnrpss pssdslrqky
      901 ikmytggvss laeqianqlq rkeqpktlld kkelgslkke fpqnlggsdv cyfcrkrvyv
      961 merlsaegkf fhrscfkcey cattlrlssy aydiedgkfy ckphycyrls gyaqrkrpav
     1021 gplsgkdtkg plqdamasdg sgrantipts aerapgsnvn gleepslakr lrgtperiel
     1081 enyrlslqre eeleevpeet laehnlssvl dkgteedvps sssesemeee deeeddelll
     1141 pqqppsdlgg vpwkeavrih allkgkseee ieaeenheig dkedeeeeee eddeeeedee
     1201 sseegeycpw eselqqglwl qrlsneedtg tfkagnlrlq qivnpvdple iladvhwthi
     1261 rekeeeekmv ptsksstsra sdlpsvrhea vqawletvpg apcedndved elgtepadte
     1321 gqageegdtg aelddddips daeaefrlhq vgigepelkv sedeedeegt egascsvted
     1381 pckpsipiqs pndsvlplsp adspkakqae aakdwlaevs naikspearf fpepfildeg
     1441 pkdetprdrk vksplvppsp vlsqpvaspe avmptsltes qpaastlass ptsaqtpics
     1501 qplpsaetsi pspveppvcf qpvpaltstp laklvlrsqs sevkklgspt taeealkrsn
     1561 lveefwmksa eirrslgltp vdrnkcsetn ftvsalettp mktfnsenvs gderihlvkp
     1621 qpaprrqgls kleneqisll tpkspsekel kssnevrrdv ssssglglqe sssnmrtmas
     1681 qsfntsdstm ltppsspppp ppqdeepatl rrkrhqavwq neiearsppt pastppaptr
     1741 hqstsaares aqakkddvrk sfaesvdeip faddvedtyd drtedsslhe kfftpptsrp
     1801 rpekplllpl vkenggppsm eggvnqkkrv lpeisveake laeermrare ksvksqalrd
     1861 amakqlckmk dmemaaaaaa ggtrarkass vplktkelfy espkylglkm aegstlkhda
     1921 asekfstpaa dvagpegsvt ssegssgksk krtslfsprk nkkekksknd srlsdkssgg
     1981 teeatkprsl wksvfsgykk dkkkktddks cpstpsssat vdsgkhkasp lvtaadlqlr
     2041 qhlsfsedsd lssddvlers sqksrresiy vphalafkrs ysskraytee elnakltrrv
     2101 qkaarrqakq eelkrlhraq iiqrqleqve ekqrqleerg vavekalrge adywgesyys
     2161 dlidlhlgve pnagtprrrp lsfcpccahe gmgkkddpkl mqewfklvqe knalvryese
     2221 lmifarelel edrqsrlqqe lrermavedh lktdeelsee krilnemlev veqrdslval
     2281 leeqrlreke edkdleavml skgfslnws
//
LOCUS       XP_053908676            2308 aa            linear   VRT 09-MAR-2023
DEFINITION  F-actin-monooxygenase MICAL3 isoform X4 [Cuculus canorus].
ACCESSION   XP_053908676
VERSION     XP_053908676.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052701.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2308
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2308
                     /product="F-actin-monooxygenase MICAL3 isoform X4"
                     /calculated_mol_wt=259504
     Region          86..>226
                     /region_name="UbiH"
                     /note="2-polyprenyl-6-methoxyphenol hydroxylase and
                     related FAD-dependent oxidoreductases [Coenzyme transport
                     and metabolism, Energy production and conversion];
                     COG0654"
                     /db_xref="CDD:440419"
     Region          514..624
                     /region_name="CH_MICAL3"
                     /note="calponin homology (CH) domain found in molecule
                     interacting with CasL protein 3; cd21251"
                     /db_xref="CDD:409100"
     Site            order(519,523,573,575..576,579..580,582,591..599,607,
                     609..610,612..613,616..617,620)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409100"
     Region          951..1005
                     /region_name="LIM_Mical"
                     /note="The LIM domain of Mical (molecule interacting with
                     CasL); cd09439"
                     /db_xref="CDD:188823"
     Site            order(951,954,972,975,978,981,1001,1004)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188823"
     Region          <1254..1600
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     Region          2141..2294
                     /region_name="bMERB_dom"
                     /note="Bivalent Mical/EHBP Rab binding domain; pfam12130"
                     /db_xref="CDD:463467"
     CDS             1..2308
                     /gene="MICAL3"
                     /coded_by="XM_054052701.1:297..7223"
                     /db_xref="GeneID:104055894"
ORIGIN      
        1 meesknekvn qahvlfdkfv qastckgtlk afqelcdyle lkpkdyrsfy hklksklnyw
       61 kakalwakld krgshkdykk gkacantkcl iigagpcglr taidlsflga kvvviekrda
      121 fsrnnvlhlw pftihdlrgl gakkfygkfc agsidhisir qlqlillkva lilgieihvn
      181 vefqglvypp edqenerigw ralvhpkthp vseyefevii ggdgrrntle gfrrkefrgk
      241 laiaitanfi nrnttaeakv eeisgvafif nqkffqdlre atgidleniv yykddthyfv
      301 mtakkqslle kgvirhdyad telllsrenv dqeallnyar eaadfstnqq lpsldfainh
      361 ygqpdvamfd ftcmyasena alvreqnghq llvalvgdsl lepfwpmgtg iargflaamd
      421 sawmvrswsl gasplevlae resiyrllpq ttpenvsknf shysidpatr ypninvnflr
      481 pqqvrhlynt gdlkdihlei enfvnsrtpk ltrnesvars skllswcqrq tdgyagvnvt
      541 dltmswksgl alcaiihryr pdlidfdsld ehdvernnql afdiaekefg ispimtgkem
      601 asvgepdkls mvmyltqfye mfkdtipssd tldlnaeeka aliastkspi sflsklgqsi
      661 srkrtpkdkk ekeldgagkr rktsqseded iprsyreerp tlvsalterr idaavgnqnk
      721 vksmatqlla kfeenapvqs stlrrqqpvl pyqervhnqp ssrreqgrla pipqwkqmri
      781 kersrtcpkk vimlsstpps sppyprqqrn repdancpge qsprqerrsp rlfsddqvpe
      841 nveqracqla alresrpavr hqpetepsrr ffvdqwelsl slrssnrpss pssdslrqky
      901 ikmytggvss laeqianqlq rkeqpktlld kkelgslkke fpqnlggsdv cyfcrkrvyv
      961 merlsaegkf fhrscfkcey cattlrlssy aydiedgkfy ckphycyrls gyaqrkrpav
     1021 gplsgkdtkg plqdamasdg sgrantipts aerapgsnvn gleepslakr lrgtperiel
     1081 enyrlslqre eeleevpeet laehnlssvl dkgteedvps sssesemeee deeeddelll
     1141 pqqppsdlgg vpwkeavrih allkgkseee ieaeenheig dkedeeeeee eddeeeedee
     1201 sseegeycpw eselqqglwl qrlsneedtg tfkagnlrlq qivnpvdple iladvhwthi
     1261 rekeeeekmv ptsksstsra sdlpsvrhea vqawletvpg apcedndved elgtepadte
     1321 gqageegdtg aelddddips daeaefrlhq vgigepelkv sedeedeegt egascsvted
     1381 pckpsipiqs pndsvlplsp adspkakqae aakdwlaevs naikspearf fpepfildeg
     1441 pkdetprdrk vksplvppsp vlsqpvaspe avmptsltes qpaastlass ptsaqtpics
     1501 qplpsaetsi pspveppvcf qpvpaltstp laklvlrsqs sevkklgspt taeealkrsn
     1561 lveefwmksa eirrslgltp vdrnkcsetn ftvsalettp mktfnsenvs gderihlvkp
     1621 qpaprrqgls kleneqisll tpkspsekel kssnevrrdv ssssglglqe sssnmrtmas
     1681 qsfntsdstm ltppsspppp ppqdeepatl rrkrhqavwq neiearsppt pastppaptr
     1741 hqstsaares aqakkddvrk sfaesvdeip faddvedtyd drtedsslhe kfftpptsrp
     1801 rpekplllpl vkenggppsm eggvnqkkrv lpeisveake laeermrare ksvksqalrd
     1861 amakqlckmk dmemaaaaaa ggtrarkass vplktkelfy espkylglkm aegstlkhda
     1921 asekfstpaa dvagpegsvt ssegssgksk krtslfsprk nkkekksknd srlsdkssgg
     1981 teeatkprsl wksvfsgykk dkkkktddks cpstpsssat vdsgkhkasp lvtaadlqlr
     2041 qhlsfsedsd lssddvlers sqksrrepfh ekfcifqemq knesiyvpha lafkrsyssk
     2101 rayteeelna kltrrvqkaa rrqakqeelk rlhraqiiqr qleqveekqr qleergvave
     2161 kalrgeavep nagtprrrpl sfcpccaheg mgkkddpklm qewfklvqek nalvryesel
     2221 mifarelele drqsrlqqel rermavedhl ktdeelseek rilnemlevv eqrdslvall
     2281 eeqrlrekee dkdleavmls kgfslnws
//
LOCUS       XP_053908750            2303 aa            linear   VRT 09-MAR-2023
DEFINITION  F-actin-monooxygenase MICAL3 isoform X5 [Cuculus canorus].
ACCESSION   XP_053908750
VERSION     XP_053908750.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052775.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2303
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2303
                     /product="F-actin-monooxygenase MICAL3 isoform X5"
                     /calculated_mol_wt=259109
     Region          86..>226
                     /region_name="UbiH"
                     /note="2-polyprenyl-6-methoxyphenol hydroxylase and
                     related FAD-dependent oxidoreductases [Coenzyme transport
                     and metabolism, Energy production and conversion];
                     COG0654"
                     /db_xref="CDD:440419"
     Region          514..624
                     /region_name="CH_MICAL3"
                     /note="calponin homology (CH) domain found in molecule
                     interacting with CasL protein 3; cd21251"
                     /db_xref="CDD:409100"
     Site            order(519,523,573,575..576,579..580,582,591..599,607,
                     609..610,612..613,616..617,620)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409100"
     Region          951..1005
                     /region_name="LIM_Mical"
                     /note="The LIM domain of Mical (molecule interacting with
                     CasL); cd09439"
                     /db_xref="CDD:188823"
     Site            order(951,954,972,975,978,981,1001,1004)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188823"
     Region          <1254..1600
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     Region          2141..2289
                     /region_name="bMERB_dom"
                     /note="Bivalent Mical/EHBP Rab binding domain; pfam12130"
                     /db_xref="CDD:463467"
     CDS             1..2303
                     /gene="MICAL3"
                     /coded_by="XM_054052775.1:297..7208"
                     /db_xref="GeneID:104055894"
ORIGIN      
        1 meesknekvn qahvlfdkfv qastckgtlk afqelcdyle lkpkdyrsfy hklksklnyw
       61 kakalwakld krgshkdykk gkacantkcl iigagpcglr taidlsflga kvvviekrda
      121 fsrnnvlhlw pftihdlrgl gakkfygkfc agsidhisir qlqlillkva lilgieihvn
      181 vefqglvypp edqenerigw ralvhpkthp vseyefevii ggdgrrntle gfrrkefrgk
      241 laiaitanfi nrnttaeakv eeisgvafif nqkffqdlre atgidleniv yykddthyfv
      301 mtakkqslle kgvirhdyad telllsrenv dqeallnyar eaadfstnqq lpsldfainh
      361 ygqpdvamfd ftcmyasena alvreqnghq llvalvgdsl lepfwpmgtg iargflaamd
      421 sawmvrswsl gasplevlae resiyrllpq ttpenvsknf shysidpatr ypninvnflr
      481 pqqvrhlynt gdlkdihlei enfvnsrtpk ltrnesvars skllswcqrq tdgyagvnvt
      541 dltmswksgl alcaiihryr pdlidfdsld ehdvernnql afdiaekefg ispimtgkem
      601 asvgepdkls mvmyltqfye mfkdtipssd tldlnaeeka aliastkspi sflsklgqsi
      661 srkrtpkdkk ekeldgagkr rktsqseded iprsyreerp tlvsalterr idaavgnqnk
      721 vksmatqlla kfeenapvqs stlrrqqpvl pyqervhnqp ssrreqgrla pipqwkqmri
      781 kersrtcpkk vimlsstpps sppyprqqrn repdancpge qsprqerrsp rlfsddqvpe
      841 nveqracqla alresrpavr hqpetepsrr ffvdqwelsl slrssnrpss pssdslrqky
      901 ikmytggvss laeqianqlq rkeqpktlld kkelgslkke fpqnlggsdv cyfcrkrvyv
      961 merlsaegkf fhrscfkcey cattlrlssy aydiedgkfy ckphycyrls gyaqrkrpav
     1021 gplsgkdtkg plqdamasdg sgrantipts aerapgsnvn gleepslakr lrgtperiel
     1081 enyrlslqre eeleevpeet laehnlssvl dkgteedvps sssesemeee deeeddelll
     1141 pqqppsdlgg vpwkeavrih allkgkseee ieaeenheig dkedeeeeee eddeeeedee
     1201 sseegeycpw eselqqglwl qrlsneedtg tfkagnlrlq qivnpvdple iladvhwthi
     1261 rekeeeekmv ptsksstsra sdlpsvrhea vqawletvpg apcedndved elgtepadte
     1321 gqageegdtg aelddddips daeaefrlhq vgigepelkv sedeedeegt egascsvted
     1381 pckpsipiqs pndsvlplsp adspkakqae aakdwlaevs naikspearf fpepfildeg
     1441 pkdetprdrk vksplvppsp vlsqpvaspe avmptsltes qpaastlass ptsaqtpics
     1501 qplpsaetsi pspveppvcf qpvpaltstp laklvlrsqs sevkklgspt taeealkrsn
     1561 lveefwmksa eirrslgltp vdrnkcsetn ftvsalettp mktfnsenvs gderihlvkp
     1621 qpaprrqgls kleneqisll tpkspsekel kssnevrrdv ssssglglqe sssnmrtmas
     1681 qsfntsdstm ltppsspppp ppqdeepatl rrkrhqavwq neiearsppt pastppaptr
     1741 hqstsaares aqakkddvrk sfaesvdeip faddvedtyd drtedsslhe kfftpptsrp
     1801 rpekplllpl vkenggppsm eggvnqkkrv lpeisveake laeermrare ksvksqalrd
     1861 amakqlckmk dmemaaaaaa ggtrarkass vplktkelfy espkylglkm aegstlkhda
     1921 asekfstpaa dvagpegsvt ssegssgksk krtslfsprk nkkekksknd srlsdkssgg
     1981 teeatkprsl wksvfsgykk dkkkktddks cpstpsssat vdsgkhkasp lvtaadlqlr
     2041 qhlsfsedsd lssddvlers sqksrrepfh ekfcifqemq knesiyvpha lafkrsyssk
     2101 rayteeelna kltrrvqkaa rrqakqeelk rlhraqiiqr qleqveekqr qleergvave
     2161 kalrgeadyw gesyysdlid lhlggmgkkd dpklmqewfk lvqeknalvr yeselmifar
     2221 eleledrqsr lqqelrerma vedhlktdee lseekrilne mlevveqrds lvalleeqrl
     2281 rekeedkdle avmlskgfsl nws
//
LOCUS       XP_053908831            2295 aa            linear   VRT 09-MAR-2023
DEFINITION  F-actin-monooxygenase MICAL3 isoform X6 [Cuculus canorus].
ACCESSION   XP_053908831
VERSION     XP_053908831.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052856.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2295
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2295
                     /product="F-actin-monooxygenase MICAL3 isoform X6"
                     /calculated_mol_wt=257976
     Region          86..>226
                     /region_name="UbiH"
                     /note="2-polyprenyl-6-methoxyphenol hydroxylase and
                     related FAD-dependent oxidoreductases [Coenzyme transport
                     and metabolism, Energy production and conversion];
                     COG0654"
                     /db_xref="CDD:440419"
     Region          514..624
                     /region_name="CH_MICAL3"
                     /note="calponin homology (CH) domain found in molecule
                     interacting with CasL protein 3; cd21251"
                     /db_xref="CDD:409100"
     Site            order(519,523,573,575..576,579..580,582,591..599,607,
                     609..610,612..613,616..617,620)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409100"
     Region          951..1005
                     /region_name="LIM_Mical"
                     /note="The LIM domain of Mical (molecule interacting with
                     CasL); cd09439"
                     /db_xref="CDD:188823"
     Site            order(951,954,972,975,978,981,1001,1004)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188823"
     Region          <1224..1570
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     Region          2111..2281
                     /region_name="bMERB_dom"
                     /note="Bivalent Mical/EHBP Rab binding domain; pfam12130"
                     /db_xref="CDD:463467"
     CDS             1..2295
                     /gene="MICAL3"
                     /coded_by="XM_054052856.1:297..7184"
                     /db_xref="GeneID:104055894"
ORIGIN      
        1 meesknekvn qahvlfdkfv qastckgtlk afqelcdyle lkpkdyrsfy hklksklnyw
       61 kakalwakld krgshkdykk gkacantkcl iigagpcglr taidlsflga kvvviekrda
      121 fsrnnvlhlw pftihdlrgl gakkfygkfc agsidhisir qlqlillkva lilgieihvn
      181 vefqglvypp edqenerigw ralvhpkthp vseyefevii ggdgrrntle gfrrkefrgk
      241 laiaitanfi nrnttaeakv eeisgvafif nqkffqdlre atgidleniv yykddthyfv
      301 mtakkqslle kgvirhdyad telllsrenv dqeallnyar eaadfstnqq lpsldfainh
      361 ygqpdvamfd ftcmyasena alvreqnghq llvalvgdsl lepfwpmgtg iargflaamd
      421 sawmvrswsl gasplevlae resiyrllpq ttpenvsknf shysidpatr ypninvnflr
      481 pqqvrhlynt gdlkdihlei enfvnsrtpk ltrnesvars skllswcqrq tdgyagvnvt
      541 dltmswksgl alcaiihryr pdlidfdsld ehdvernnql afdiaekefg ispimtgkem
      601 asvgepdkls mvmyltqfye mfkdtipssd tldlnaeeka aliastkspi sflsklgqsi
      661 srkrtpkdkk ekeldgagkr rktsqseded iprsyreerp tlvsalterr idaavgnqnk
      721 vksmatqlla kfeenapvqs stlrrqqpvl pyqervhnqp ssrreqgrla pipqwkqmri
      781 kersrtcpkk vimlsstpps sppyprqqrn repdancpge qsprqerrsp rlfsddqvpe
      841 nveqracqla alresrpavr hqpetepsrr ffvdqwelsl slrssnrpss pssdslrqky
      901 ikmytggvss laeqianqlq rkeqpktlld kkelgslkke fpqnlggsdv cyfcrkrvyv
      961 merlsaegkf fhrscfkcey cattlrlssy aydiedgkfy ckphycyrls gyaqrkrpav
     1021 gplsgkdtkg plqdamasdg sgrantipts aerapgsnvn gleepslakr lrgtperiel
     1081 enyrlslqre eeleevpeet laehnlssvl dkgteedvps sssesemeee deeeddelll
     1141 pqqppsdlgg vpwkeavrih allkgkseee ieaeenheig dkedeeeeee eddeeeedee
     1201 sseagnlrlq qivnpvdple iladvhwthi rekeeeekmv ptsksstsra sdlpsvrhea
     1261 vqawletvpg apcedndved elgtepadte gqageegdtg aelddddips daeaefrlhq
     1321 vgigepelkv sedeedeegt egascsvted pckpsipiqs pndsvlplsp adspkakqae
     1381 aakdwlaevs naikspearf fpepfildeg pkdetprdrk vksplvppsp vlsqpvaspe
     1441 avmptsltes qpaastlass ptsaqtpics qplpsaetsi pspveppvcf qpvpaltstp
     1501 laklvlrsqs sevkklgspt taeealkrsn lveefwmksa eirrslgltp vdrnkcsetn
     1561 ftvsalettp mktfnsenvs gderihlvkp qpaprrqgls kleneqisll tpkspsekel
     1621 kssnevrrdv ssssglglqe sssnmrtmas qsfntsdstm ltppsspppp ppqdeepatl
     1681 rrkrhqavwq neiearsppt pastppaptr hqstsaares aqakkddvrk sfaesvdeip
     1741 faddvedtyd drtedsslhe kfftpptsrp rpekplllpl vkenggppsm eggvnqkkrv
     1801 lpeisveake laeermrare ksvksqalrd amakqlckmk dmemaaaaaa ggtrarkass
     1861 vplktkelfy espkylglkm aegstlkhda asekfstpaa dvagpegsvt ssegssgksk
     1921 krtslfsprk nkkekksknd srlsdkssgg teeatkprsl wksvfsgykk dkkkktddks
     1981 cpstpsssat vdsgkhkasp lvtaadlqlr qhlsfsedsd lssddvlers sqksrrepfh
     2041 ekfcifqemq knesiyvpha lafkrsyssk rayteeelna kltrrvqkaa rrqakqeelk
     2101 rlhraqiiqr qleqveekqr qleergvave kalrgeadyw gesyysdlid lhlgvepnag
     2161 tprrrplsfc pccahegmgk kddpklmqew fklvqeknal vryeselmif areleledrq
     2221 srlqqelrer mavedhlktd eelseekril nemlevveqr dslvalleeq rlrekeedkd
     2281 leavmlskgf slnws
//
LOCUS       XP_053908915            2294 aa            linear   VRT 09-MAR-2023
DEFINITION  F-actin-monooxygenase MICAL3 isoform X7 [Cuculus canorus].
ACCESSION   XP_053908915
VERSION     XP_053908915.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052940.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2294
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2294
                     /product="F-actin-monooxygenase MICAL3 isoform X7"
                     /calculated_mol_wt=257949
     Region          86..>226
                     /region_name="UbiH"
                     /note="2-polyprenyl-6-methoxyphenol hydroxylase and
                     related FAD-dependent oxidoreductases [Coenzyme transport
                     and metabolism, Energy production and conversion];
                     COG0654"
                     /db_xref="CDD:440419"
     Region          514..624
                     /region_name="CH_MICAL3"
                     /note="calponin homology (CH) domain found in molecule
                     interacting with CasL protein 3; cd21251"
                     /db_xref="CDD:409100"
     Site            order(519,523,573,575..576,579..580,582,591..599,607,
                     609..610,612..613,616..617,620)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409100"
     Region          920..974
                     /region_name="LIM_Mical"
                     /note="The LIM domain of Mical (molecule interacting with
                     CasL); cd09439"
                     /db_xref="CDD:188823"
     Site            order(920,923,941,944,947,950,970,973)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188823"
     Region          <1223..1569
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     Region          2110..2280
                     /region_name="bMERB_dom"
                     /note="Bivalent Mical/EHBP Rab binding domain; pfam12130"
                     /db_xref="CDD:463467"
     CDS             1..2294
                     /gene="MICAL3"
                     /coded_by="XM_054052940.1:297..7181"
                     /db_xref="GeneID:104055894"
ORIGIN      
        1 meesknekvn qahvlfdkfv qastckgtlk afqelcdyle lkpkdyrsfy hklksklnyw
       61 kakalwakld krgshkdykk gkacantkcl iigagpcglr taidlsflga kvvviekrda
      121 fsrnnvlhlw pftihdlrgl gakkfygkfc agsidhisir qlqlillkva lilgieihvn
      181 vefqglvypp edqenerigw ralvhpkthp vseyefevii ggdgrrntle gfrrkefrgk
      241 laiaitanfi nrnttaeakv eeisgvafif nqkffqdlre atgidleniv yykddthyfv
      301 mtakkqslle kgvirhdyad telllsrenv dqeallnyar eaadfstnqq lpsldfainh
      361 ygqpdvamfd ftcmyasena alvreqnghq llvalvgdsl lepfwpmgtg iargflaamd
      421 sawmvrswsl gasplevlae resiyrllpq ttpenvsknf shysidpatr ypninvnflr
      481 pqqvrhlynt gdlkdihlei enfvnsrtpk ltrnesvars skllswcqrq tdgyagvnvt
      541 dltmswksgl alcaiihryr pdlidfdsld ehdvernnql afdiaekefg ispimtgkem
      601 asvgepdkls mvmyltqfye mfkdtipssd tldlnaeeka aliastkspi sflsklgqsi
      661 srkrtpkdkk ekeldgagkr rktsqseded iprsyreerp tlvsalterr idaavgnqnk
      721 vksmatqlla kfeenapvqs stlrrqqpvl pyqervhnqp ssrreqgrla pipqwkqrnr
      781 epdancpgeq sprqerrspr lfsddqvpen veqracqlaa lresrpavrh qpetepsrrf
      841 fvdqwelsls lrssnrpssp ssdslrqkyi kmytggvssl aeqianqlqr keqpktlldk
      901 kelgslkkef pqnlggsdvc yfcrkrvyvm erlsaegkff hrscfkceyc attlrlssya
      961 ydiedgkfyc kphycyrlsg yaqrkrpavg plsgkdtkgp lqdamasdgs grantiptsa
     1021 erapgsnvng leepslakrl rgtperiele nyrlslqree eleevpeetl aehnlssvld
     1081 kgteedvpss ssesemeeed eeeddelllp qqppsdlggv pwkeavriha llkgkseeei
     1141 eaeenheigd kedeeeeeee ddeeeedees seegeycpwe selqqglwlq rlsneedtgt
     1201 fkagnlrlqq ivnpvdplei ladvhwthir ekeeeekmvp tsksstsras dlpsvrheav
     1261 qawletvpga pcedndvede lgtepadteg qageegdtga elddddipsd aeaefrlhqv
     1321 gigepelkvs edeedeegte gascsvtedp ckpsipiqsp ndsvlplspa dspkakqaea
     1381 akdwlaevsn aikspearff pepfildegp kdetprdrkv ksplvppspv lsqpvaspea
     1441 vmptsltesq paastlassp tsaqtpicsq plpsaetsip spveppvcfq pvpaltstpl
     1501 aklvlrsqss evkklgsptt aeealkrsnl veefwmksae irrslgltpv drnkcsetnf
     1561 tvsalettpm ktfnsenvsg derihlvkpq paprrqglsk leneqisllt pkspsekelk
     1621 ssnevrrdvs sssglglqes ssnmrtmasq sfntsdstml tppssppppp pqdeepatlr
     1681 rkrhqavwqn eiearspptp astppaptrh qstsaaresa qakkddvrks faesvdeipf
     1741 addvedtydd rtedsslhek fftpptsrpr pekplllplv kenggppsme ggvnqkkrvl
     1801 peisveakel aeermrarek svksqalrda makqlckmkd memaaaaaag gtrarkassv
     1861 plktkelfye spkylglkma egstlkhdaa sekfstpaad vagpegsvts segssgkskk
     1921 rtslfsprkn kkekksknds rlsdkssggt eeatkprslw ksvfsgykkd kkkktddksc
     1981 pstpsssatv dsgkhkaspl vtaadlqlrq hlsfsedsdl ssddvlerss qksrrepfhe
     2041 kfcifqemqk nesiyvphal afkrsysskr ayteeelnak ltrrvqkaar rqakqeelkr
     2101 lhraqiiqrq leqveekqrq leergvavek alrgeadywg esyysdlidl hlgvepnagt
     2161 prrrplsfcp ccahegmgkk ddpklmqewf klvqeknalv ryeselmifa releledrqs
     2221 rlqqelrerm avedhlktde elseekriln emlevveqrd slvalleeqr lrekeedkdl
     2281 eavmlskgfs lnws
//
LOCUS       XP_053908997            2292 aa            linear   VRT 09-MAR-2023
DEFINITION  F-actin-monooxygenase MICAL3 isoform X8 [Cuculus canorus].
ACCESSION   XP_053908997
VERSION     XP_053908997.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053022.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2292
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2292
                     /product="F-actin-monooxygenase MICAL3 isoform X8"
                     /calculated_mol_wt=257558
     Region          86..>226
                     /region_name="UbiH"
                     /note="2-polyprenyl-6-methoxyphenol hydroxylase and
                     related FAD-dependent oxidoreductases [Coenzyme transport
                     and metabolism, Energy production and conversion];
                     COG0654"
                     /db_xref="CDD:440419"
     Region          514..624
                     /region_name="CH_MICAL3"
                     /note="calponin homology (CH) domain found in molecule
                     interacting with CasL protein 3; cd21251"
                     /db_xref="CDD:409100"
     Site            order(519,523,573,575..576,579..580,582,591..599,607,
                     609..610,612..613,616..617,620)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409100"
     Region          951..1005
                     /region_name="LIM_Mical"
                     /note="The LIM domain of Mical (molecule interacting with
                     CasL); cd09439"
                     /db_xref="CDD:188823"
     Site            order(951,954,972,975,978,981,1001,1004)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188823"
     Region          <1254..1600
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     Region          2108..2278
                     /region_name="bMERB_dom"
                     /note="Bivalent Mical/EHBP Rab binding domain; pfam12130"
                     /db_xref="CDD:463467"
     CDS             1..2292
                     /gene="MICAL3"
                     /coded_by="XM_054053022.1:297..7175"
                     /db_xref="GeneID:104055894"
ORIGIN      
        1 meesknekvn qahvlfdkfv qastckgtlk afqelcdyle lkpkdyrsfy hklksklnyw
       61 kakalwakld krgshkdykk gkacantkcl iigagpcglr taidlsflga kvvviekrda
      121 fsrnnvlhlw pftihdlrgl gakkfygkfc agsidhisir qlqlillkva lilgieihvn
      181 vefqglvypp edqenerigw ralvhpkthp vseyefevii ggdgrrntle gfrrkefrgk
      241 laiaitanfi nrnttaeakv eeisgvafif nqkffqdlre atgidleniv yykddthyfv
      301 mtakkqslle kgvirhdyad telllsrenv dqeallnyar eaadfstnqq lpsldfainh
      361 ygqpdvamfd ftcmyasena alvreqnghq llvalvgdsl lepfwpmgtg iargflaamd
      421 sawmvrswsl gasplevlae resiyrllpq ttpenvsknf shysidpatr ypninvnflr
      481 pqqvrhlynt gdlkdihlei enfvnsrtpk ltrnesvars skllswcqrq tdgyagvnvt
      541 dltmswksgl alcaiihryr pdlidfdsld ehdvernnql afdiaekefg ispimtgkem
      601 asvgepdkls mvmyltqfye mfkdtipssd tldlnaeeka aliastkspi sflsklgqsi
      661 srkrtpkdkk ekeldgagkr rktsqseded iprsyreerp tlvsalterr idaavgnqnk
      721 vksmatqlla kfeenapvqs stlrrqqpvl pyqervhnqp ssrreqgrla pipqwkqmri
      781 kersrtcpkk vimlsstpps sppyprqqrn repdancpge qsprqerrsp rlfsddqvpe
      841 nveqracqla alresrpavr hqpetepsrr ffvdqwelsl slrssnrpss pssdslrqky
      901 ikmytggvss laeqianqlq rkeqpktlld kkelgslkke fpqnlggsdv cyfcrkrvyv
      961 merlsaegkf fhrscfkcey cattlrlssy aydiedgkfy ckphycyrls gyaqrkrpav
     1021 gplsgkdtkg plqdamasdg sgrantipts aerapgsnvn gleepslakr lrgtperiel
     1081 enyrlslqre eeleevpeet laehnlssvl dkgteedvps sssesemeee deeeddelll
     1141 pqqppsdlgg vpwkeavrih allkgkseee ieaeenheig dkedeeeeee eddeeeedee
     1201 sseegeycpw eselqqglwl qrlsneedtg tfkagnlrlq qivnpvdple iladvhwthi
     1261 rekeeeekmv ptsksstsra sdlpsvrhea vqawletvpg apcedndved elgtepadte
     1321 gqageegdtg aelddddips daeaefrlhq vgigepelkv sedeedeegt egascsvted
     1381 pckpsipiqs pndsvlplsp adspkakqae aakdwlaevs naikspearf fpepfildeg
     1441 pkdetprdrk vksplvppsp vlsqpvaspe avmptsltes qpaastlass ptsaqtpics
     1501 qplpsaetsi pspveppvcf qpvpaltstp laklvlrsqs sevkklgspt taeealkrsn
     1561 lveefwmksa eirrslgltp vdrnkcsetn ftvsalettp mktfnsenvs gderihlvkp
     1621 qpaprrqgls kleneqisll tpkspsekel kssnevrrdv ssssglglqe sssnmrtmas
     1681 qsfntsdstm ltppsspppp ppqdeepatl rrkrhqavwq neiearsppt pastppaptr
     1741 hqstsaares aqakkddvrk sfaesvdeip faddvedtyd drtedsslhe kfftpptsrp
     1801 rpekplllpl vkenggppsm eggvnqkkrv lpeisveake laeermrare ksvksqalrd
     1861 amakqlckmk dmemaaaaaa ggtrarkass vplktkelfy espkylglkm aegstlkhda
     1921 asekfstpaa dvagpegsvt ssegssgksk krtslfsprk nkkekksknd srlsdkssgg
     1981 teeatkprsl wksvfsgykk dkkkktddks cpstpsssat vdsgkhkasp lvtaadlqlr
     2041 qhlsfsedsd lssddvlers sqksrreray teeelnaklt rrvqkaarrq akqeelkrlh
     2101 raqiiqrqle qveekqrqle ergvavekal rgeadywges yysdlidlhl gvepnagtpr
     2161 rrplsfcpcc ahegmgkkdd pklmqewfkl vqeknalvry eselmifare leledrqsrl
     2221 qqelrermav edhlktdeel seekrilnem levveqrdsl valleeqrlr ekeedkdlea
     2281 vmlskgfsln ws
//
LOCUS       XP_053909072            2286 aa            linear   VRT 09-MAR-2023
DEFINITION  F-actin-monooxygenase MICAL3 isoform X9 [Cuculus canorus].
ACCESSION   XP_053909072
VERSION     XP_053909072.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053097.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2286
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2286
                     /product="F-actin-monooxygenase MICAL3 isoform X9"
                     /calculated_mol_wt=257081
     Region          86..>226
                     /region_name="UbiH"
                     /note="2-polyprenyl-6-methoxyphenol hydroxylase and
                     related FAD-dependent oxidoreductases [Coenzyme transport
                     and metabolism, Energy production and conversion];
                     COG0654"
                     /db_xref="CDD:440419"
     Region          514..624
                     /region_name="CH_MICAL3"
                     /note="calponin homology (CH) domain found in molecule
                     interacting with CasL protein 3; cd21251"
                     /db_xref="CDD:409100"
     Site            order(519,523,573,575..576,579..580,582,591..599,607,
                     609..610,612..613,616..617,620)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409100"
     Region          951..1005
                     /region_name="LIM_Mical"
                     /note="The LIM domain of Mical (molecule interacting with
                     CasL); cd09439"
                     /db_xref="CDD:188823"
     Site            order(951,954,972,975,978,981,1001,1004)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188823"
     Region          <1254..1600
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     Region          2141..2272
                     /region_name="bMERB_dom"
                     /note="Bivalent Mical/EHBP Rab binding domain; pfam12130"
                     /db_xref="CDD:463467"
     CDS             1..2286
                     /gene="MICAL3"
                     /coded_by="XM_054053097.1:297..7157"
                     /db_xref="GeneID:104055894"
ORIGIN      
        1 meesknekvn qahvlfdkfv qastckgtlk afqelcdyle lkpkdyrsfy hklksklnyw
       61 kakalwakld krgshkdykk gkacantkcl iigagpcglr taidlsflga kvvviekrda
      121 fsrnnvlhlw pftihdlrgl gakkfygkfc agsidhisir qlqlillkva lilgieihvn
      181 vefqglvypp edqenerigw ralvhpkthp vseyefevii ggdgrrntle gfrrkefrgk
      241 laiaitanfi nrnttaeakv eeisgvafif nqkffqdlre atgidleniv yykddthyfv
      301 mtakkqslle kgvirhdyad telllsrenv dqeallnyar eaadfstnqq lpsldfainh
      361 ygqpdvamfd ftcmyasena alvreqnghq llvalvgdsl lepfwpmgtg iargflaamd
      421 sawmvrswsl gasplevlae resiyrllpq ttpenvsknf shysidpatr ypninvnflr
      481 pqqvrhlynt gdlkdihlei enfvnsrtpk ltrnesvars skllswcqrq tdgyagvnvt
      541 dltmswksgl alcaiihryr pdlidfdsld ehdvernnql afdiaekefg ispimtgkem
      601 asvgepdkls mvmyltqfye mfkdtipssd tldlnaeeka aliastkspi sflsklgqsi
      661 srkrtpkdkk ekeldgagkr rktsqseded iprsyreerp tlvsalterr idaavgnqnk
      721 vksmatqlla kfeenapvqs stlrrqqpvl pyqervhnqp ssrreqgrla pipqwkqmri
      781 kersrtcpkk vimlsstpps sppyprqqrn repdancpge qsprqerrsp rlfsddqvpe
      841 nveqracqla alresrpavr hqpetepsrr ffvdqwelsl slrssnrpss pssdslrqky
      901 ikmytggvss laeqianqlq rkeqpktlld kkelgslkke fpqnlggsdv cyfcrkrvyv
      961 merlsaegkf fhrscfkcey cattlrlssy aydiedgkfy ckphycyrls gyaqrkrpav
     1021 gplsgkdtkg plqdamasdg sgrantipts aerapgsnvn gleepslakr lrgtperiel
     1081 enyrlslqre eeleevpeet laehnlssvl dkgteedvps sssesemeee deeeddelll
     1141 pqqppsdlgg vpwkeavrih allkgkseee ieaeenheig dkedeeeeee eddeeeedee
     1201 sseegeycpw eselqqglwl qrlsneedtg tfkagnlrlq qivnpvdple iladvhwthi
     1261 rekeeeekmv ptsksstsra sdlpsvrhea vqawletvpg apcedndved elgtepadte
     1321 gqageegdtg aelddddips daeaefrlhq vgigepelkv sedeedeegt egascsvted
     1381 pckpsipiqs pndsvlplsp adspkakqae aakdwlaevs naikspearf fpepfildeg
     1441 pkdetprdrk vksplvppsp vlsqpvaspe avmptsltes qpaastlass ptsaqtpics
     1501 qplpsaetsi pspveppvcf qpvpaltstp laklvlrsqs sevkklgspt taeealkrsn
     1561 lveefwmksa eirrslgltp vdrnkcsetn ftvsalettp mktfnsenvs gderihlvkp
     1621 qpaprrqgls kleneqisll tpkspsekel kssnevrrdv ssssglglqe sssnmrtmas
     1681 qsfntsdstm ltppsspppp ppqdeepatl rrkrhqavwq neiearsppt pastppaptr
     1741 hqstsaares aqakkddvrk sfaesvdeip faddvedtyd drtedsslhe kfftpptsrp
     1801 rpekplllpl vkenggppsm eggvnqkkrv lpeisveake laeermrare ksvksqalrd
     1861 amakqlckmk dmemaaaaaa ggtrarkass vplktkelfy espkylglkm aegstlkhda
     1921 asekfstpaa dvagpegsvt ssegssgksk krtslfsprk nkkekksknd srlsdkssgg
     1981 teeatkprsl wksvfsgykk dkkkktddks cpstpsssat vdsgkhkasp lvtaadlqlr
     2041 qhlsfsedsd lssddvlers sqksrrepfh ekfcifqemq knesiyvpha lafkrsyssk
     2101 rayteeelna kltrrvqkaa rrqakqeelk rlhraqiiqr qleqveekqr qleergvave
     2161 kalrgeagmg kkddpklmqe wfklvqekna lvryeselmi fareleledr qsrlqqelre
     2221 rmavedhlkt deelseekri lnemlevveq rdslvallee qrlrekeedk dleavmlskg
     2281 fslnws
//
LOCUS       XP_053909133            2249 aa            linear   VRT 09-MAR-2023
DEFINITION  F-actin-monooxygenase MICAL3 isoform X10 [Cuculus canorus].
ACCESSION   XP_053909133
VERSION     XP_053909133.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053158.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2249
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2249
                     /product="F-actin-monooxygenase MICAL3 isoform X10"
                     /calculated_mol_wt=252711
     Region          86..>226
                     /region_name="UbiH"
                     /note="2-polyprenyl-6-methoxyphenol hydroxylase and
                     related FAD-dependent oxidoreductases [Coenzyme transport
                     and metabolism, Energy production and conversion];
                     COG0654"
                     /db_xref="CDD:440419"
     Region          514..624
                     /region_name="CH_MICAL3"
                     /note="calponin homology (CH) domain found in molecule
                     interacting with CasL protein 3; cd21251"
                     /db_xref="CDD:409100"
     Site            order(519,523,573,575..576,579..580,582,591..599,607,
                     609..610,612..613,616..617,620)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409100"
     Region          951..1005
                     /region_name="LIM_Mical"
                     /note="The LIM domain of Mical (molecule interacting with
                     CasL); cd09439"
                     /db_xref="CDD:188823"
     Site            order(951,954,972,975,978,981,1001,1004)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188823"
     Region          <1299..>1456
                     /region_name="PLN03209"
                     /note="translocon at the inner envelope of chloroplast
                     subunit 62; Provisional"
                     /db_xref="CDD:178748"
     Region          <1380..1467
                     /region_name="PLN02983"
                     /note="biotin carboxyl carrier protein of acetyl-CoA
                     carboxylase"
                     /db_xref="CDD:215533"
     Region          2065..2235
                     /region_name="bMERB_dom"
                     /note="Bivalent Mical/EHBP Rab binding domain; pfam12130"
                     /db_xref="CDD:463467"
     CDS             1..2249
                     /gene="MICAL3"
                     /coded_by="XM_054053158.1:297..7046"
                     /db_xref="GeneID:104055894"
ORIGIN      
        1 meesknekvn qahvlfdkfv qastckgtlk afqelcdyle lkpkdyrsfy hklksklnyw
       61 kakalwakld krgshkdykk gkacantkcl iigagpcglr taidlsflga kvvviekrda
      121 fsrnnvlhlw pftihdlrgl gakkfygkfc agsidhisir qlqlillkva lilgieihvn
      181 vefqglvypp edqenerigw ralvhpkthp vseyefevii ggdgrrntle gfrrkefrgk
      241 laiaitanfi nrnttaeakv eeisgvafif nqkffqdlre atgidleniv yykddthyfv
      301 mtakkqslle kgvirhdyad telllsrenv dqeallnyar eaadfstnqq lpsldfainh
      361 ygqpdvamfd ftcmyasena alvreqnghq llvalvgdsl lepfwpmgtg iargflaamd
      421 sawmvrswsl gasplevlae resiyrllpq ttpenvsknf shysidpatr ypninvnflr
      481 pqqvrhlynt gdlkdihlei enfvnsrtpk ltrnesvars skllswcqrq tdgyagvnvt
      541 dltmswksgl alcaiihryr pdlidfdsld ehdvernnql afdiaekefg ispimtgkem
      601 asvgepdkls mvmyltqfye mfkdtipssd tldlnaeeka aliastkspi sflsklgqsi
      661 srkrtpkdkk ekeldgagkr rktsqseded iprsyreerp tlvsalterr idaavgnqnk
      721 vksmatqlla kfeenapvqs stlrrqqpvl pyqervhnqp ssrreqgrla pipqwkqmri
      781 kersrtcpkk vimlsstpps sppyprqqrn repdancpge qsprqerrsp rlfsddqvpe
      841 nveqracqla alresrpavr hqpetepsrr ffvdqwelsl slrssnrpss pssdslrqky
      901 ikmytggvss laeqianqlq rkeqpktlld kkelgslkke fpqnlggsdv cyfcrkrvyv
      961 merlsaegkf fhrscfkcey cattlrlssy aydiedgkfy ckphycyrls gyaqrkrpav
     1021 gplsgkdtkg plqdamasdg sgrantipts aerapgsnvn gleepslakr lrgtperiel
     1081 enyrlslqre eeleevpeet laehnlssvl dkgteedvps sssesemeee deeeddelll
     1141 pqqppsdlgg vpwkeavrih allkgkseee ieaeenheig dkedeeeeee eddeeeedee
     1201 sseasdlpsv rheavqawle tvpgapcedn dvedelgtep adtegqagee gdtgaelddd
     1261 dipsdaeaef rlhqvgigep elkvsedeed eegtegascs vtedpckpsi piqspndsvl
     1321 plspadspka kqaeaakdwl aevsnaiksp earffpepfi ldegpkdetp rdrkvksplv
     1381 ppspvlsqpv aspeavmpts ltesqpaast lassptsaqt picsqplpsa etsipspvep
     1441 pvcfqpvpal tstplaklvl rsqssevkkl gspttaeeal krsnlveefw mksaeirrsl
     1501 gltpvdrnkc setnftvsal ettpmktfns envsgderih lvkpqpaprr qglskleneq
     1561 islltpksps ekelkssnev rrdvssssgl glqesssnmr tmasqsfnts dstmltppss
     1621 ppppppqdee patlrrkrhq avwqneiear spptpastpp aptrhqstsa aresaqakkd
     1681 dvrksfaesv deipfaddve dtyddrteds slhekfftpp tsrprpekpl llplvkengg
     1741 ppsmeggvnq kkrvlpeisv eakelaeerm rareksvksq alrdamakql ckmkdmemaa
     1801 aaaaggtrar kassvplktk elfyespkyl glkmaegstl khdaasekfs tpaadvagpe
     1861 gsvtssegss gkskkrtslf sprknkkekk skndsrlsdk ssggteeatk prslwksvfs
     1921 gykkdkkkkt ddkscpstps ssatvdsgkh kasplvtaad lqlrqhlsfs edsdlssddv
     1981 lerssqksrr epfhekfcif qemqknesiy vphalafkrs ysskraytee elnakltrrv
     2041 qkaarrqakq eelkrlhraq iiqrqleqve ekqrqleerg vavekalrge adywgesyys
     2101 dlidlhlgve pnagtprrrp lsfcpccahe gmgkkddpkl mqewfklvqe knalvryese
     2161 lmifarelel edrqsrlqqe lrermavedh lktdeelsee krilnemlev veqrdslval
     2221 leeqrlreke edkdleavml skgfslnws
//
LOCUS       XP_053909167            2240 aa            linear   VRT 09-MAR-2023
DEFINITION  F-actin-monooxygenase MICAL3 isoform X11 [Cuculus canorus].
ACCESSION   XP_053909167
VERSION     XP_053909167.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053192.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2240
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2240
                     /product="F-actin-monooxygenase MICAL3 isoform X11"
                     /calculated_mol_wt=251686
     Region          86..>226
                     /region_name="UbiH"
                     /note="2-polyprenyl-6-methoxyphenol hydroxylase and
                     related FAD-dependent oxidoreductases [Coenzyme transport
                     and metabolism, Energy production and conversion];
                     COG0654"
                     /db_xref="CDD:440419"
     Region          514..624
                     /region_name="CH_MICAL3"
                     /note="calponin homology (CH) domain found in molecule
                     interacting with CasL protein 3; cd21251"
                     /db_xref="CDD:409100"
     Site            order(519,523,573,575..576,579..580,582,591..599,607,
                     609..610,612..613,616..617,620)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409100"
     Region          866..920
                     /region_name="LIM_Mical"
                     /note="The LIM domain of Mical (molecule interacting with
                     CasL); cd09439"
                     /db_xref="CDD:188823"
     Site            order(866,869,887,890,893,896,916,919)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188823"
     Region          <1169..1515
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     Region          2056..2226
                     /region_name="bMERB_dom"
                     /note="Bivalent Mical/EHBP Rab binding domain; pfam12130"
                     /db_xref="CDD:463467"
     CDS             1..2240
                     /gene="MICAL3"
                     /coded_by="XM_054053192.1:297..7019"
                     /db_xref="GeneID:104055894"
ORIGIN      
        1 meesknekvn qahvlfdkfv qastckgtlk afqelcdyle lkpkdyrsfy hklksklnyw
       61 kakalwakld krgshkdykk gkacantkcl iigagpcglr taidlsflga kvvviekrda
      121 fsrnnvlhlw pftihdlrgl gakkfygkfc agsidhisir qlqlillkva lilgieihvn
      181 vefqglvypp edqenerigw ralvhpkthp vseyefevii ggdgrrntle gfrrkefrgk
      241 laiaitanfi nrnttaeakv eeisgvafif nqkffqdlre atgidleniv yykddthyfv
      301 mtakkqslle kgvirhdyad telllsrenv dqeallnyar eaadfstnqq lpsldfainh
      361 ygqpdvamfd ftcmyasena alvreqnghq llvalvgdsl lepfwpmgtg iargflaamd
      421 sawmvrswsl gasplevlae resiyrllpq ttpenvsknf shysidpatr ypninvnflr
      481 pqqvrhlynt gdlkdihlei enfvnsrtpk ltrnesvars skllswcqrq tdgyagvnvt
      541 dltmswksgl alcaiihryr pdlidfdsld ehdvernnql afdiaekefg ispimtgkem
      601 asvgepdkls mvmyltqfye mfkdtipssd tldlnaeeka aliastkspi sflsklgqsi
      661 srkrtpkdkk ekeldgagkr rktsqseded iprsyreerp tlvsalterr idaavgnqnk
      721 vksmatqlla kfeenapvqs stlrrqqpvl pyqervhnqp ssrreqgrla pipqwkqpet
      781 epsrrffvdq welslslrss nrpsspssds lrqkyikmyt ggvsslaeqi anqlqrkeqp
      841 ktlldkkelg slkkefpqnl ggsdvcyfcr krvyvmerls aegkffhrsc fkceycattl
      901 rlssyaydie dgkfyckphy cyrlsgyaqr krpavgplsg kdtkgplqda masdgsgran
      961 tiptsaerap gsnvngleep slakrlrgtp erielenyrl slqreeelee vpeetlaehn
     1021 lssvldkgte edvpsssses emeeedeeed delllpqqpp sdlggvpwke avrihallkg
     1081 kseeeieaee nheigdkede eeeeeeddee eedeesseeg eycpweselq qglwlqrlsn
     1141 eedtgtfkag nlrlqqivnp vdpleiladv hwthirekee eekmvptsks stsrasdlps
     1201 vrheavqawl etvpgapced ndvedelgte padtegqage egdtgaeldd ddipsdaeae
     1261 frlhqvgige pelkvsedee deegtegasc svtedpckps ipiqspndsv lplspadspk
     1321 akqaeaakdw laevsnaiks pearffpepf ildegpkdet prdrkvkspl vppspvlsqp
     1381 vaspeavmpt sltesqpaas tlassptsaq tpicsqplps aetsipspve ppvcfqpvpa
     1441 ltstplaklv lrsqssevkk lgspttaeea lkrsnlveef wmksaeirrs lgltpvdrnk
     1501 csetnftvsa lettpmktfn senvsgderi hlvkpqpapr rqglsklene qislltpksp
     1561 sekelkssne vrrdvssssg lglqesssnm rtmasqsfnt sdstmltpps sppppppqde
     1621 epatlrrkrh qavwqneiea rspptpastp paptrhqsts aaresaqakk ddvrksfaes
     1681 vdeipfaddv edtyddrted sslhekfftp ptsrprpekp lllplvkeng gppsmeggvn
     1741 qkkrvlpeis veakelaeer mrareksvks qalrdamakq lckmkdmema aaaaaggtra
     1801 rkassvplkt kelfyespky lglkmaegst lkhdaasekf stpaadvagp egsvtssegs
     1861 sgkskkrtsl fsprknkkek kskndsrlsd kssggteeat kprslwksvf sgykkdkkkk
     1921 tddkscpstp sssatvdsgk hkasplvtaa dlqlrqhlsf sedsdlssdd vlerssqksr
     1981 repfhekfci fqemqknesi yvphalafkr sysskrayte eelnakltrr vqkaarrqak
     2041 qeelkrlhra qiiqrqleqv eekqrqleer gvavekalrg eadywgesyy sdlidlhlgv
     2101 epnagtprrr plsfcpccah egmgkkddpk lmqewfklvq eknalvryes elmifarele
     2161 ledrqsrlqq elrermaved hlktdeelse ekrilnemle vveqrdslva lleeqrlrek
     2221 eedkdleavm lskgfslnws
//
LOCUS       XP_053909204            2204 aa            linear   VRT 09-MAR-2023
DEFINITION  F-actin-monooxygenase MICAL3 isoform X12 [Cuculus canorus].
ACCESSION   XP_053909204
VERSION     XP_053909204.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053229.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2204
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2204
                     /product="F-actin-monooxygenase MICAL3 isoform X12"
                     /calculated_mol_wt=247524
     Region          86..>226
                     /region_name="UbiH"
                     /note="2-polyprenyl-6-methoxyphenol hydroxylase and
                     related FAD-dependent oxidoreductases [Coenzyme transport
                     and metabolism, Energy production and conversion];
                     COG0654"
                     /db_xref="CDD:440419"
     Region          514..624
                     /region_name="CH_MICAL3"
                     /note="calponin homology (CH) domain found in molecule
                     interacting with CasL protein 3; cd21251"
                     /db_xref="CDD:409100"
     Site            order(519,523,573,575..576,579..580,582,591..599,607,
                     609..610,612..613,616..617,620)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409100"
     Region          830..884
                     /region_name="LIM_Mical"
                     /note="The LIM domain of Mical (molecule interacting with
                     CasL); cd09439"
                     /db_xref="CDD:188823"
     Site            order(830,833,851,854,857,860,880,883)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188823"
     Region          <1133..1479
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     Region          2020..2190
                     /region_name="bMERB_dom"
                     /note="Bivalent Mical/EHBP Rab binding domain; pfam12130"
                     /db_xref="CDD:463467"
     CDS             1..2204
                     /gene="MICAL3"
                     /coded_by="XM_054053229.1:297..6911"
                     /db_xref="GeneID:104055894"
ORIGIN      
        1 meesknekvn qahvlfdkfv qastckgtlk afqelcdyle lkpkdyrsfy hklksklnyw
       61 kakalwakld krgshkdykk gkacantkcl iigagpcglr taidlsflga kvvviekrda
      121 fsrnnvlhlw pftihdlrgl gakkfygkfc agsidhisir qlqlillkva lilgieihvn
      181 vefqglvypp edqenerigw ralvhpkthp vseyefevii ggdgrrntle gfrrkefrgk
      241 laiaitanfi nrnttaeakv eeisgvafif nqkffqdlre atgidleniv yykddthyfv
      301 mtakkqslle kgvirhdyad telllsrenv dqeallnyar eaadfstnqq lpsldfainh
      361 ygqpdvamfd ftcmyasena alvreqnghq llvalvgdsl lepfwpmgtg iargflaamd
      421 sawmvrswsl gasplevlae resiyrllpq ttpenvsknf shysidpatr ypninvnflr
      481 pqqvrhlynt gdlkdihlei enfvnsrtpk ltrnesvars skllswcqrq tdgyagvnvt
      541 dltmswksgl alcaiihryr pdlidfdsld ehdvernnql afdiaekefg ispimtgkem
      601 asvgepdkls mvmyltqfye mfkdtipssd tldlnaeeka aliastkspi sflsklgqsi
      661 srkrtpkdkk ekeldgagkr rktsqseded iprsyreerp tlvsalterr idaavgnqnk
      721 vksmatqlla kfeenapvqs stlrrqqpvl pyqervhnqp ssrreqgrla pipqwkqkyi
      781 kmytggvssl aeqianqlqr keqpktlldk kelgslkkef pqnlggsdvc yfcrkrvyvm
      841 erlsaegkff hrscfkceyc attlrlssya ydiedgkfyc kphycyrlsg yaqrkrpavg
      901 plsgkdtkgp lqdamasdgs grantiptsa erapgsnvng leepslakrl rgtperiele
      961 nyrlslqree eleevpeetl aehnlssvld kgteedvpss ssesemeeed eeeddelllp
     1021 qqppsdlggv pwkeavriha llkgkseeei eaeenheigd kedeeeeeee ddeeeedees
     1081 seegeycpwe selqqglwlq rlsneedtgt fkagnlrlqq ivnpvdplei ladvhwthir
     1141 ekeeeekmvp tsksstsras dlpsvrheav qawletvpga pcedndvede lgtepadteg
     1201 qageegdtga elddddipsd aeaefrlhqv gigepelkvs edeedeegte gascsvtedp
     1261 ckpsipiqsp ndsvlplspa dspkakqaea akdwlaevsn aikspearff pepfildegp
     1321 kdetprdrkv ksplvppspv lsqpvaspea vmptsltesq paastlassp tsaqtpicsq
     1381 plpsaetsip spveppvcfq pvpaltstpl aklvlrsqss evkklgsptt aeealkrsnl
     1441 veefwmksae irrslgltpv drnkcsetnf tvsalettpm ktfnsenvsg derihlvkpq
     1501 paprrqglsk leneqisllt pkspsekelk ssnevrrdvs sssglglqes ssnmrtmasq
     1561 sfntsdstml tppssppppp pqdeepatlr rkrhqavwqn eiearspptp astppaptrh
     1621 qstsaaresa qakkddvrks faesvdeipf addvedtydd rtedsslhek fftpptsrpr
     1681 pekplllplv kenggppsme ggvnqkkrvl peisveakel aeermrarek svksqalrda
     1741 makqlckmkd memaaaaaag gtrarkassv plktkelfye spkylglkma egstlkhdaa
     1801 sekfstpaad vagpegsvts segssgkskk rtslfsprkn kkekksknds rlsdkssggt
     1861 eeatkprslw ksvfsgykkd kkkktddksc pstpsssatv dsgkhkaspl vtaadlqlrq
     1921 hlsfsedsdl ssddvlerss qksrrepfhe kfcifqemqk nesiyvphal afkrsysskr
     1981 ayteeelnak ltrrvqkaar rqakqeelkr lhraqiiqrq leqveekqrq leergvavek
     2041 alrgeadywg esyysdlidl hlgvepnagt prrrplsfcp ccahegmgkk ddpklmqewf
     2101 klvqeknalv ryeselmifa releledrqs rlqqelrerm avedhlktde elseekriln
     2161 emlevveqrd slvalleeqr lrekeedkdl eavmlskgfs lnws
//
LOCUS       XP_053909273            2168 aa            linear   VRT 09-MAR-2023
DEFINITION  F-actin-monooxygenase MICAL3 isoform X13 [Cuculus canorus].
ACCESSION   XP_053909273
VERSION     XP_053909273.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053298.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2168
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2168
                     /product="F-actin-monooxygenase MICAL3 isoform X13"
                     /calculated_mol_wt=243391
     Region          86..>226
                     /region_name="UbiH"
                     /note="2-polyprenyl-6-methoxyphenol hydroxylase and
                     related FAD-dependent oxidoreductases [Coenzyme transport
                     and metabolism, Energy production and conversion];
                     COG0654"
                     /db_xref="CDD:440419"
     Region          514..624
                     /region_name="CH_MICAL3"
                     /note="calponin homology (CH) domain found in molecule
                     interacting with CasL protein 3; cd21251"
                     /db_xref="CDD:409100"
     Site            order(519,523,573,575..576,579..580,582,591..599,607,
                     609..610,612..613,616..617,620)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409100"
     Region          794..848
                     /region_name="LIM_Mical"
                     /note="The LIM domain of Mical (molecule interacting with
                     CasL); cd09439"
                     /db_xref="CDD:188823"
     Site            order(794,797,815,818,821,824,844,847)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188823"
     Region          <1097..1443
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     Region          1984..2154
                     /region_name="bMERB_dom"
                     /note="Bivalent Mical/EHBP Rab binding domain; pfam12130"
                     /db_xref="CDD:463467"
     CDS             1..2168
                     /gene="MICAL3"
                     /coded_by="XM_054053298.1:296..6802"
                     /db_xref="GeneID:104055894"
ORIGIN      
        1 meesknekvn qahvlfdkfv qastckgtlk afqelcdyle lkpkdyrsfy hklksklnyw
       61 kakalwakld krgshkdykk gkacantkcl iigagpcglr taidlsflga kvvviekrda
      121 fsrnnvlhlw pftihdlrgl gakkfygkfc agsidhisir qlqlillkva lilgieihvn
      181 vefqglvypp edqenerigw ralvhpkthp vseyefevii ggdgrrntle gfrrkefrgk
      241 laiaitanfi nrnttaeakv eeisgvafif nqkffqdlre atgidleniv yykddthyfv
      301 mtakkqslle kgvirhdyad telllsrenv dqeallnyar eaadfstnqq lpsldfainh
      361 ygqpdvamfd ftcmyasena alvreqnghq llvalvgdsl lepfwpmgtg iargflaamd
      421 sawmvrswsl gasplevlae resiyrllpq ttpenvsknf shysidpatr ypninvnflr
      481 pqqvrhlynt gdlkdihlei enfvnsrtpk ltrnesvars skllswcqrq tdgyagvnvt
      541 dltmswksgl alcaiihryr pdlidfdsld ehdvernnql afdiaekefg ispimtgkem
      601 asvgepdkls mvmyltqfye mfkdtipssd tldlnaeeka aliastkspi sflsklgqsi
      661 srkrtpkdkk ekeldgagkr rktsqseded iprsyreerp tlvsalterr idaavgnqnk
      721 vksmatqlla kfeenapvqs stlrrqqpvl pyqervhnqp ssrreqgrla pipqwkqgsl
      781 kkefpqnlgg sdvcyfcrkr vyvmerlsae gkffhrscfk ceycattlrl ssyaydiedg
      841 kfyckphycy rlsgyaqrkr pavgplsgkd tkgplqdama sdgsgranti ptsaerapgs
      901 nvngleepsl akrlrgtper ielenyrlsl qreeeleevp eetlaehnls svldkgteed
      961 vpssssesem eeedeeedde lllpqqppsd lggvpwkeav rihallkgks eeeieaeenh
     1021 eigdkedeee eeeeddeeee deesseegey cpweselqqg lwlqrlsnee dtgtfkagnl
     1081 rlqqivnpvd pleiladvhw thirekeeee kmvptsksst srasdlpsvr heavqawlet
     1141 vpgapcednd vedelgtepa dtegqageeg dtgaeldddd ipsdaeaefr lhqvgigepe
     1201 lkvsedeede egtegascsv tedpckpsip iqspndsvlp lspadspkak qaeaakdwla
     1261 evsnaikspe arffpepfil degpkdetpr drkvksplvp pspvlsqpva speavmptsl
     1321 tesqpaastl assptsaqtp icsqplpsae tsipspvepp vcfqpvpalt stplaklvlr
     1381 sqssevkklg spttaeealk rsnlveefwm ksaeirrslg ltpvdrnkcs etnftvsale
     1441 ttpmktfnse nvsgderihl vkpqpaprrq glskleneqi slltpkspse kelkssnevr
     1501 rdvssssglg lqesssnmrt masqsfntsd stmltppssp pppppqdeep atlrrkrhqa
     1561 vwqneiears pptpastppa ptrhqstsaa resaqakkdd vrksfaesvd eipfaddved
     1621 tyddrtedss lhekfftppt srprpekpll lplvkenggp psmeggvnqk krvlpeisve
     1681 akelaeermr areksvksqa lrdamakqlc kmkdmemaaa aaaggtrark assvplktke
     1741 lfyespkylg lkmaegstlk hdaasekfst paadvagpeg svtssegssg kskkrtslfs
     1801 prknkkekks kndsrlsdks sggteeatkp rslwksvfsg ykkdkkkktd dkscpstpss
     1861 satvdsgkhk asplvtaadl qlrqhlsfse dsdlssddvl erssqksrre pfhekfcifq
     1921 emqknesiyv phalafkrsy sskrayteee lnakltrrvq kaarrqakqe elkrlhraqi
     1981 iqrqleqvee kqrqleergv avekalrgea dywgesyysd lidlhlgvep nagtprrrpl
     2041 sfcpccaheg mgkkddpklm qewfklvqek nalvryesel mifarelele drqsrlqqel
     2101 rermavedhl ktdeelseek rilnemlevv eqrdslvall eeqrlrekee dkdleavmls
     2161 kgfslnws
//
LOCUS       XP_053909326            2137 aa            linear   VRT 09-MAR-2023
DEFINITION  F-actin-monooxygenase MICAL3 isoform X14 [Cuculus canorus].
ACCESSION   XP_053909326
VERSION     XP_053909326.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053351.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2137
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2137
                     /product="F-actin-monooxygenase MICAL3 isoform X14"
                     /calculated_mol_wt=239685
     Region          86..>226
                     /region_name="UbiH"
                     /note="2-polyprenyl-6-methoxyphenol hydroxylase and
                     related FAD-dependent oxidoreductases [Coenzyme transport
                     and metabolism, Energy production and conversion];
                     COG0654"
                     /db_xref="CDD:440419"
     Region          514..624
                     /region_name="CH_MICAL3"
                     /note="calponin homology (CH) domain found in molecule
                     interacting with CasL protein 3; cd21251"
                     /db_xref="CDD:409100"
     Site            order(519,523,573,575..576,579..580,582,591..599,607,
                     609..610,612..613,616..617,620)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409100"
     Region          763..817
                     /region_name="LIM_Mical"
                     /note="The LIM domain of Mical (molecule interacting with
                     CasL); cd09439"
                     /db_xref="CDD:188823"
     Site            order(763,766,784,787,790,793,813,816)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188823"
     Region          <1066..1412
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     Region          1953..2123
                     /region_name="bMERB_dom"
                     /note="Bivalent Mical/EHBP Rab binding domain; pfam12130"
                     /db_xref="CDD:463467"
     CDS             1..2137
                     /gene="MICAL3"
                     /coded_by="XM_054053351.1:296..6709"
                     /db_xref="GeneID:104055894"
ORIGIN      
        1 meesknekvn qahvlfdkfv qastckgtlk afqelcdyle lkpkdyrsfy hklksklnyw
       61 kakalwakld krgshkdykk gkacantkcl iigagpcglr taidlsflga kvvviekrda
      121 fsrnnvlhlw pftihdlrgl gakkfygkfc agsidhisir qlqlillkva lilgieihvn
      181 vefqglvypp edqenerigw ralvhpkthp vseyefevii ggdgrrntle gfrrkefrgk
      241 laiaitanfi nrnttaeakv eeisgvafif nqkffqdlre atgidleniv yykddthyfv
      301 mtakkqslle kgvirhdyad telllsrenv dqeallnyar eaadfstnqq lpsldfainh
      361 ygqpdvamfd ftcmyasena alvreqnghq llvalvgdsl lepfwpmgtg iargflaamd
      421 sawmvrswsl gasplevlae resiyrllpq ttpenvsknf shysidpatr ypninvnflr
      481 pqqvrhlynt gdlkdihlei enfvnsrtpk ltrnesvars skllswcqrq tdgyagvnvt
      541 dltmswksgl alcaiihryr pdlidfdsld ehdvernnql afdiaekefg ispimtgkem
      601 asvgepdkls mvmyltqfye mfkdtipssd tldlnaeeka aliastkspi sflsklgqsi
      661 srkrtpkdkk ekeldgagkr rktsqseded iprsyreerp tlvsalterr idaavgnqnk
      721 vksmatqlla kfeenapvqs stlrrqgslk kefpqnlggs dvcyfcrkrv yvmerlsaeg
      781 kffhrscfkc eycattlrls syaydiedgk fyckphycyr lsgyaqrkrp avgplsgkdt
      841 kgplqdamas dgsgrantip tsaerapgsn vngleepsla krlrgtperi elenyrlslq
      901 reeeleevpe etlaehnlss vldkgteedv psssseseme eedeeeddel llpqqppsdl
      961 ggvpwkeavr ihallkgkse eeieaeenhe igdkedeeee eeeddeeeed eesseegeyc
     1021 pweselqqgl wlqrlsneed tgtfkagnlr lqqivnpvdp leiladvhwt hirekeeeek
     1081 mvptskssts rasdlpsvrh eavqawletv pgapcedndv edelgtepad tegqageegd
     1141 tgaelddddi psdaeaefrl hqvgigepel kvsedeedee gtegascsvt edpckpsipi
     1201 qspndsvlpl spadspkakq aeaakdwlae vsnaikspea rffpepfild egpkdetprd
     1261 rkvksplvpp spvlsqpvas peavmptslt esqpaastla ssptsaqtpi csqplpsaet
     1321 sipspveppv cfqpvpalts tplaklvlrs qssevkklgs pttaeealkr snlveefwmk
     1381 saeirrslgl tpvdrnkcse tnftvsalet tpmktfnsen vsgderihlv kpqpaprrqg
     1441 lskleneqis lltpkspsek elkssnevrr dvssssglgl qesssnmrtm asqsfntsds
     1501 tmltppsspp ppppqdeepa tlrrkrhqav wqneiearsp ptpastppap trhqstsaar
     1561 esaqakkddv rksfaesvde ipfaddvedt yddrtedssl hekfftppts rprpekplll
     1621 plvkenggpp smeggvnqkk rvlpeisvea kelaeermra reksvksqal rdamakqlck
     1681 mkdmemaaaa aaggtrarka ssvplktkel fyespkylgl kmaegstlkh daasekfstp
     1741 aadvagpegs vtssegssgk skkrtslfsp rknkkekksk ndsrlsdkss ggteeatkpr
     1801 slwksvfsgy kkdkkkktdd kscpstpsss atvdsgkhka splvtaadlq lrqhlsfsed
     1861 sdlssddvle rssqksrrep fhekfcifqe mqknesiyvp halafkrsys skrayteeel
     1921 nakltrrvqk aarrqakqee lkrlhraqii qrqleqveek qrqleergva vekalrgead
     1981 ywgesyysdl idlhlgvepn agtprrrpls fcpccahegm gkkddpklmq ewfklvqekn
     2041 alvryeselm ifareleled rqsrlqqelr ermavedhlk tdeelseekr ilnemlevve
     2101 qrdslvalle eqrlrekeed kdleavmlsk gfslnws
//
LOCUS       XP_053909398            2086 aa            linear   VRT 09-MAR-2023
DEFINITION  F-actin-monooxygenase MICAL3 isoform X15 [Cuculus canorus].
ACCESSION   XP_053909398
VERSION     XP_053909398.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053423.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2086
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2086
                     /product="F-actin-monooxygenase MICAL3 isoform X15"
                     /calculated_mol_wt=233885
     Region          86..>226
                     /region_name="UbiH"
                     /note="2-polyprenyl-6-methoxyphenol hydroxylase and
                     related FAD-dependent oxidoreductases [Coenzyme transport
                     and metabolism, Energy production and conversion];
                     COG0654"
                     /db_xref="CDD:440419"
     Region          514..624
                     /region_name="CH_MICAL3"
                     /note="calponin homology (CH) domain found in molecule
                     interacting with CasL protein 3; cd21251"
                     /db_xref="CDD:409100"
     Site            order(519,523,573,575..576,579..580,582,591..599,607,
                     609..610,612..613,616..617,620)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409100"
     Region          763..817
                     /region_name="LIM_Mical"
                     /note="The LIM domain of Mical (molecule interacting with
                     CasL); cd09439"
                     /db_xref="CDD:188823"
     Site            order(763,766,784,787,790,793,813,816)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188823"
     Region          <1136..>1293
                     /region_name="PLN03209"
                     /note="translocon at the inner envelope of chloroplast
                     subunit 62; Provisional"
                     /db_xref="CDD:178748"
     Region          <1217..1304
                     /region_name="PLN02983"
                     /note="biotin carboxyl carrier protein of acetyl-CoA
                     carboxylase"
                     /db_xref="CDD:215533"
     Region          1902..2072
                     /region_name="bMERB_dom"
                     /note="Bivalent Mical/EHBP Rab binding domain; pfam12130"
                     /db_xref="CDD:463467"
     CDS             1..2086
                     /gene="MICAL3"
                     /coded_by="XM_054053423.1:296..6556"
                     /db_xref="GeneID:104055894"
ORIGIN      
        1 meesknekvn qahvlfdkfv qastckgtlk afqelcdyle lkpkdyrsfy hklksklnyw
       61 kakalwakld krgshkdykk gkacantkcl iigagpcglr taidlsflga kvvviekrda
      121 fsrnnvlhlw pftihdlrgl gakkfygkfc agsidhisir qlqlillkva lilgieihvn
      181 vefqglvypp edqenerigw ralvhpkthp vseyefevii ggdgrrntle gfrrkefrgk
      241 laiaitanfi nrnttaeakv eeisgvafif nqkffqdlre atgidleniv yykddthyfv
      301 mtakkqslle kgvirhdyad telllsrenv dqeallnyar eaadfstnqq lpsldfainh
      361 ygqpdvamfd ftcmyasena alvreqnghq llvalvgdsl lepfwpmgtg iargflaamd
      421 sawmvrswsl gasplevlae resiyrllpq ttpenvsknf shysidpatr ypninvnflr
      481 pqqvrhlynt gdlkdihlei enfvnsrtpk ltrnesvars skllswcqrq tdgyagvnvt
      541 dltmswksgl alcaiihryr pdlidfdsld ehdvernnql afdiaekefg ispimtgkem
      601 asvgepdkls mvmyltqfye mfkdtipssd tldlnaeeka aliastkspi sflsklgqsi
      661 srkrtpkdkk ekeldgagkr rktsqseded iprsyreerp tlvsalterr idaavgnqnk
      721 vksmatqlla kfeenapvqs stlrrqgslk kefpqnlggs dvcyfcrkrv yvmerlsaeg
      781 kffhrscfkc eycattlrls syaydiedgk fyckphycyr lsgyaqrkrp avgplsgkdt
      841 kgplqdamas dgsgrantip tsaerapgsn vngleepsla krlrgtperi elenyrlslq
      901 reeeleevpe etlaehnlss vldkgteedv psssseseme eedeeeddel llpqqppsdl
      961 ggvpwkeavr ihallkgkse eeieaeenhe igdkedeeee eeeddeeeed eesseagnlr
     1021 lqqivnpvdp leiladvhwt hirekeeeek mvptskssts rapcedndve delgtepadt
     1081 egqageegdt gaelddddip sdaeaefrlh qvgigepelk vsedeedeeg tegascsvte
     1141 dpckpsipiq spndsvlpls padspkakqa eaakdwlaev snaikspear ffpepfilde
     1201 gpkdetprdr kvksplvpps pvlsqpvasp eavmptslte sqpaastlas sptsaqtpic
     1261 sqplpsaets ipspveppvc fqpvpaltst plaklvlrsq ssevkklgsp ttaeealkrs
     1321 nlveefwmks aeirrslglt pvdrnkcset nftvsalett pmktfnsenv sgderihlvk
     1381 pqpaprrqgl skleneqisl ltpkspseke lkssnevrrd vssssglglq esssnmrtma
     1441 sqsfntsdst mltppssppp pppqdeepat lrrkrhqavw qneiearspp tpastppapt
     1501 rhqstsaare saqakkddvr ksfaesvdei pfaddvedty ddrtedsslh ekfftpptsr
     1561 prpekplllp lvkenggpps meggvnqkkr vlpeisveak elaeermrar eksvksqalr
     1621 damakqlckm kdmemaaaaa aggtrarkas svplktkelf yespkylglk maegstlkhd
     1681 aasekfstpa advagpegsv tssegssgks kkrtslfspr knkkekkskn dsrlsdkssg
     1741 gteeatkprs lwksvfsgyk kdkkkktddk scpstpsssa tvdsgkhkas plvtaadlql
     1801 rqhlsfseds dlssddvler ssqksrrepf hekfcifqem qknesiyvph alafkrsyss
     1861 krayteeeln akltrrvqka arrqakqeel krlhraqiiq rqleqveekq rqleergvav
     1921 ekalrgeady wgesyysdli dlhlgvepna gtprrrplsf cpccahegmg kkddpklmqe
     1981 wfklvqekna lvryeselmi fareleledr qsrlqqelre rmavedhlkt deelseekri
     2041 lnemlevveq rdslvallee qrlrekeedk dleavmlskg fslnws
//
LOCUS       XP_053909478             779 aa            linear   VRT 09-MAR-2023
DEFINITION  F-actin-monooxygenase MICAL3 isoform X16 [Cuculus canorus].
ACCESSION   XP_053909478
VERSION     XP_053909478.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053503.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..779
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..779
                     /product="F-actin-monooxygenase MICAL3 isoform X16"
                     /calculated_mol_wt=88534
     Region          86..>226
                     /region_name="UbiH"
                     /note="2-polyprenyl-6-methoxyphenol hydroxylase and
                     related FAD-dependent oxidoreductases [Coenzyme transport
                     and metabolism, Energy production and conversion];
                     COG0654"
                     /db_xref="CDD:440419"
     Region          514..624
                     /region_name="CH_MICAL3"
                     /note="calponin homology (CH) domain found in molecule
                     interacting with CasL protein 3; cd21251"
                     /db_xref="CDD:409100"
     Site            order(519,523,573,575..576,579..580,582,591..599,607,
                     609..610,612..613,616..617,620)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409100"
     CDS             1..779
                     /gene="MICAL3"
                     /coded_by="XM_054053503.1:298..2637"
                     /db_xref="GeneID:104055894"
ORIGIN      
        1 meesknekvn qahvlfdkfv qastckgtlk afqelcdyle lkpkdyrsfy hklksklnyw
       61 kakalwakld krgshkdykk gkacantkcl iigagpcglr taidlsflga kvvviekrda
      121 fsrnnvlhlw pftihdlrgl gakkfygkfc agsidhisir qlqlillkva lilgieihvn
      181 vefqglvypp edqenerigw ralvhpkthp vseyefevii ggdgrrntle gfrrkefrgk
      241 laiaitanfi nrnttaeakv eeisgvafif nqkffqdlre atgidleniv yykddthyfv
      301 mtakkqslle kgvirhdyad telllsrenv dqeallnyar eaadfstnqq lpsldfainh
      361 ygqpdvamfd ftcmyasena alvreqnghq llvalvgdsl lepfwpmgtg iargflaamd
      421 sawmvrswsl gasplevlae resiyrllpq ttpenvsknf shysidpatr ypninvnflr
      481 pqqvrhlynt gdlkdihlei enfvnsrtpk ltrnesvars skllswcqrq tdgyagvnvt
      541 dltmswksgl alcaiihryr pdlidfdsld ehdvernnql afdiaekefg ispimtgkem
      601 asvgepdkls mvmyltqfye mfkdtipssd tldlnaeeka aliastkspi sflsklgqsi
      661 srkrtpkdkk ekeldgagkr rktsqseded iprsyreerp tlvsalterr idaavgnqnk
      721 vksmatqlla kfeenapvqs stlrrqqpvl pyqervhnqp ssrreqgrla pipqwkqqt
//
LOCUS       XP_053909559            2047 aa            linear   VRT 09-MAR-2023
DEFINITION  F-actin-monooxygenase MICAL3 isoform X17 [Cuculus canorus].
ACCESSION   XP_053909559
VERSION     XP_053909559.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053584.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2047
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2047
                     /product="F-actin-monooxygenase MICAL3 isoform X17"
                     /calculated_mol_wt=229434
     Region          86..>226
                     /region_name="UbiH"
                     /note="2-polyprenyl-6-methoxyphenol hydroxylase and
                     related FAD-dependent oxidoreductases [Coenzyme transport
                     and metabolism, Energy production and conversion];
                     COG0654"
                     /db_xref="CDD:440419"
     Region          514..624
                     /region_name="CH_MICAL3"
                     /note="calponin homology (CH) domain found in molecule
                     interacting with CasL protein 3; cd21251"
                     /db_xref="CDD:409100"
     Site            order(519,523,573,575..576,579..580,582,591..599,607,
                     609..610,612..613,616..617,620)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409100"
     Region          763..817
                     /region_name="LIM_Mical"
                     /note="The LIM domain of Mical (molecule interacting with
                     CasL); cd09439"
                     /db_xref="CDD:188823"
     Site            order(763,766,784,787,790,793,813,816)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188823"
     Region          <1136..>1293
                     /region_name="PLN03209"
                     /note="translocon at the inner envelope of chloroplast
                     subunit 62; Provisional"
                     /db_xref="CDD:178748"
     Region          <1217..1304
                     /region_name="PLN02983"
                     /note="biotin carboxyl carrier protein of acetyl-CoA
                     carboxylase"
                     /db_xref="CDD:215533"
     Region          1902..2033
                     /region_name="bMERB_dom"
                     /note="Bivalent Mical/EHBP Rab binding domain; pfam12130"
                     /db_xref="CDD:463467"
     CDS             1..2047
                     /gene="MICAL3"
                     /coded_by="XM_054053584.1:296..6439"
                     /db_xref="GeneID:104055894"
ORIGIN      
        1 meesknekvn qahvlfdkfv qastckgtlk afqelcdyle lkpkdyrsfy hklksklnyw
       61 kakalwakld krgshkdykk gkacantkcl iigagpcglr taidlsflga kvvviekrda
      121 fsrnnvlhlw pftihdlrgl gakkfygkfc agsidhisir qlqlillkva lilgieihvn
      181 vefqglvypp edqenerigw ralvhpkthp vseyefevii ggdgrrntle gfrrkefrgk
      241 laiaitanfi nrnttaeakv eeisgvafif nqkffqdlre atgidleniv yykddthyfv
      301 mtakkqslle kgvirhdyad telllsrenv dqeallnyar eaadfstnqq lpsldfainh
      361 ygqpdvamfd ftcmyasena alvreqnghq llvalvgdsl lepfwpmgtg iargflaamd
      421 sawmvrswsl gasplevlae resiyrllpq ttpenvsknf shysidpatr ypninvnflr
      481 pqqvrhlynt gdlkdihlei enfvnsrtpk ltrnesvars skllswcqrq tdgyagvnvt
      541 dltmswksgl alcaiihryr pdlidfdsld ehdvernnql afdiaekefg ispimtgkem
      601 asvgepdkls mvmyltqfye mfkdtipssd tldlnaeeka aliastkspi sflsklgqsi
      661 srkrtpkdkk ekeldgagkr rktsqseded iprsyreerp tlvsalterr idaavgnqnk
      721 vksmatqlla kfeenapvqs stlrrqgslk kefpqnlggs dvcyfcrkrv yvmerlsaeg
      781 kffhrscfkc eycattlrls syaydiedgk fyckphycyr lsgyaqrkrp avgplsgkdt
      841 kgplqdamas dgsgrantip tsaerapgsn vngleepsla krlrgtperi elenyrlslq
      901 reeeleevpe etlaehnlss vldkgteedv psssseseme eedeeeddel llpqqppsdl
      961 ggvpwkeavr ihallkgkse eeieaeenhe igdkedeeee eeeddeeeed eesseagnlr
     1021 lqqivnpvdp leiladvhwt hirekeeeek mvptskssts rapcedndve delgtepadt
     1081 egqageegdt gaelddddip sdaeaefrlh qvgigepelk vsedeedeeg tegascsvte
     1141 dpckpsipiq spndsvlpls padspkakqa eaakdwlaev snaikspear ffpepfilde
     1201 gpkdetprdr kvksplvpps pvlsqpvasp eavmptslte sqpaastlas sptsaqtpic
     1261 sqplpsaets ipspveppvc fqpvpaltst plaklvlrsq ssevkklgsp ttaeealkrs
     1321 nlveefwmks aeirrslglt pvdrnkcset nftvsalett pmktfnsenv sgderihlvk
     1381 pqpaprrqgl skleneqisl ltpkspseke lkssnevrrd vssssglglq esssnmrtma
     1441 sqsfntsdst mltppssppp pppqdeepat lrrkrhqavw qneiearspp tpastppapt
     1501 rhqstsaare saqakkddvr ksfaesvdei pfaddvedty ddrtedsslh ekfftpptsr
     1561 prpekplllp lvkenggpps meggvnqkkr vlpeisveak elaeermrar eksvksqalr
     1621 damakqlckm kdmemaaaaa aggtrarkas svplktkelf yespkylglk maegstlkhd
     1681 aasekfstpa advagpegsv tssegssgks kkrtslfspr knkkekkskn dsrlsdkssg
     1741 gteeatkprs lwksvfsgyk kdkkkktddk scpstpsssa tvdsgkhkas plvtaadlql
     1801 rqhlsfseds dlssddvler ssqksrrepf hekfcifqem qknesiyvph alafkrsyss
     1861 krayteeeln akltrrvqka arrqakqeel krlhraqiiq rqleqveekq rqleergvav
     1921 ekalrgeagm gkkddpklmq ewfklvqekn alvryeselm ifareleled rqsrlqqelr
     1981 ermavedhlk tdeelseekr ilnemlevve qrdslvalle eqrlrekeed kdleavmlsk
     2041 gfslnws
//
LOCUS       XP_053909669            2205 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent L-type calcium channel subunit alpha-1C isoform
            X1 [Cuculus canorus].
ACCESSION   XP_053909669
VERSION     XP_053909669.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053694.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2205
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2205
                     /product="voltage-dependent L-type calcium channel subunit
                     alpha-1C isoform X1"
                     /calculated_mol_wt=248199
     Region          150..444
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          551..792
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          929..1204
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1246..1543
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1552..1605
                     /region_name="GPHH"
                     /note="Voltage-dependent L-type calcium channel,
                     IQ-associated; pfam16905"
                     /db_xref="CDD:465306"
     Region          1615..1689
                     /region_name="Ca_chan_IQ"
                     /note="Voltage gated calcium channel IQ domain; pfam08763"
                     /db_xref="CDD:462591"
     Region          1714..2150
                     /region_name="CAC1F_C"
                     /note="Voltage-gated calcium channel subunit alpha,
                     C-term; pfam16885"
                     /db_xref="CDD:465298"
     CDS             1..2205
                     /gene="CACNA1C"
                     /coded_by="XM_054053694.1:788..7405"
                     /db_xref="GeneID:104055901"
ORIGIN      
        1 mfqalvrqay hplpshqpge petkykgklv hetqlncfyi kpggsnygsp rpahanmnan
       61 aaaglapehi ptpgaalswq aaidaarqak lmgsagnati stasstqrkr qqygkqkkqg
      121 tttatrppra llcltlknpi rracisivew kpfeiiillt ifancvalai yipfpeddsn
      181 atnsnlerve ylfliiftve aflkviaygl lfhpnaylrn gwnlldfiiv vvglfsaile
      241 qatkadggns iggkgagfdv kalrafrvlr plrlvsgvps lqvvlnsiik amvpllhial
      301 lvlfviiiya iiglelfmgk mhktcyhvqg glidtpaedd pspcapqsah grqcqngtec
      361 kagwegpkhg itnfdnfafa mltvfqcitm egwtdvlywm qdamgyelpw vyfvslvifg
      421 sffvlnlvlg vlsgefsker ekakargdfq klrekqqlee dlkgyldwit qaedidpene
      481 degmdeekpr nmsmptsete svntdnvpga diegencgar lahriskskf srywrrwnrf
      541 crrkcraavk snvfywlvif lvflntltia sehynqpdwl tevqdtankv llalftaeml
      601 lkmyslglqa yfvslfnrfd cfivcggile tilvetkims plgisvlrcv rllrifkitr
      661 ywnslsnlva sllnsvrsia slllllflfi iifsllgmql fggkfnfdem qtrrstfdnf
      721 pqslltvfqi ltgedwnsvm ydgimayggp sfpgmlvciy fiilficgny illnvflaia
      781 vdnladaesl tsaqkeeeee kerkklarta spekkqeiek taveeetkee kielksitad
      841 gesppatkin mddyqpnene ekspypptea paeedeeepe mpvgprprpm selhlkekav
      901 pmpdasaffi fspnnrfrvh chrivndnif tnlilffill ssislaaedp vrhlsfrnqi
      961 lgnadyvfts iftleiilkm taygaflhkg sfcrnyfnil dllvvsvsli sfgiqssain
     1021 vvkilrvlrv lrplrainra kglkhvvqcv fvairtigni vivttllqfm facigvqlfk
     1081 gklysctdss kqtaaecrgy yitykdgevn qpmiqprswe nskfdfdnvl tammalftvs
     1141 tfegwpelly rsidshmedv gpiynhrvei siffiiyiii iaffmmnifv gfvivtfqeq
     1201 geqeykncel dknqrqcvey alkarplrry ipknqyqykv wyvvnstyfe ylmfvlilln
     1261 ticlamqhyg qscmfkeamn ilnmlftglf tvemvlklia fkpkgyfsdp wnvfdflivi
     1321 gsiidvilse tnhyfcdawn tfdalivvgs ivdiaitevn paehtqcssf mnaeensris
     1381 itffrlfrvm rlvkllsrge girtllwtfi ksfqalpyva llivmlffiy avigmqvfgk
     1441 ialndttein rnnnfqtfpq avlllfrcat geawqeimla clpdkkcdpe sepanstead
     1501 hscgssfavf yfisfymlca fliinlfvav imdnfdyltr dwsilgphhl defkriwaey
     1561 dpeakgrikh ldvvtllrri qpplgfgklc phrvackrlv smnmplnsdg tvmfnatlfa
     1621 lvrtalrikt egnleqanee lraiikkiwk rtsmklldqv vppagddevt vgkfyatfli
     1681 qeyfrkfkkr keqglvgkps qrnalslqfa vlqaglrtlh digpeirrai sgdltaeeel
     1741 dkamkeavsa aseddifrra gglfgnhvsy yqsdgrsafp qtfttqrplh inksgnnqgd
     1801 tespsheklv dstftpssys ssgsnaninn anntalccfp nppsypstvs tveghaapls
     1861 pticvqeapw klpskrthyy etlgcsssrd sqlaivcqee vsqdetyden lnedieycse
     1921 psllstemla yqddenrqlt ppennkgeda rhspkkgflc ssalgrrasf hleclkrqkn
     1981 qgvdvsqktv lplhlvhhqa lavaglspll qrshspttfs rlcatppatp csrgwpqqti
     2041 ptlrldgaes seklnssfps vhcssrypdn sscssprrar pvsltvpsqt ggssrqfhgs
     2101 agslveavli seglmqfaqd pkfievttqe ladacdmtie emenaadnil ngnskqspng
     2161 nllpfvncrd pgqdsageee eevqnpdcrk sqeelkdsri yissl
//
LOCUS       XP_053909761            2200 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent L-type calcium channel subunit alpha-1C isoform
            X2 [Cuculus canorus].
ACCESSION   XP_053909761
VERSION     XP_053909761.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053786.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2200
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2200
                     /product="voltage-dependent L-type calcium channel subunit
                     alpha-1C isoform X2"
                     /calculated_mol_wt=247640
     Region          150..444
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          551..792
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          929..1204
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1246..1543
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1552..1605
                     /region_name="GPHH"
                     /note="Voltage-dependent L-type calcium channel,
                     IQ-associated; pfam16905"
                     /db_xref="CDD:465306"
     Region          1615..1689
                     /region_name="Ca_chan_IQ"
                     /note="Voltage gated calcium channel IQ domain; pfam08763"
                     /db_xref="CDD:462591"
     Region          1709..2145
                     /region_name="CAC1F_C"
                     /note="Voltage-gated calcium channel subunit alpha,
                     C-term; pfam16885"
                     /db_xref="CDD:465298"
     CDS             1..2200
                     /gene="CACNA1C"
                     /coded_by="XM_054053786.1:787..7389"
                     /db_xref="GeneID:104055901"
ORIGIN      
        1 mfqalvrqay hplpshqpge petkykgklv hetqlncfyi kpggsnygsp rpahanmnan
       61 aaaglapehi ptpgaalswq aaidaarqak lmgsagnati stasstqrkr qqygkqkkqg
      121 tttatrppra llcltlknpi rracisivew kpfeiiillt ifancvalai yipfpeddsn
      181 atnsnlerve ylfliiftve aflkviaygl lfhpnaylrn gwnlldfiiv vvglfsaile
      241 qatkadggns iggkgagfdv kalrafrvlr plrlvsgvps lqvvlnsiik amvpllhial
      301 lvlfviiiya iiglelfmgk mhktcyhvqg glidtpaedd pspcapqsah grqcqngtec
      361 kagwegpkhg itnfdnfafa mltvfqcitm egwtdvlywm qdamgyelpw vyfvslvifg
      421 sffvlnlvlg vlsgefsker ekakargdfq klrekqqlee dlkgyldwit qaedidpene
      481 degmdeekpr nmsmptsete svntdnvpga diegencgar lahriskskf srywrrwnrf
      541 crrkcraavk snvfywlvif lvflntltia sehynqpdwl tevqdtankv llalftaeml
      601 lkmyslglqa yfvslfnrfd cfivcggile tilvetkims plgisvlrcv rllrifkitr
      661 ywnslsnlva sllnsvrsia slllllflfi iifsllgmql fggkfnfdem qtrrstfdnf
      721 pqslltvfqi ltgedwnsvm ydgimayggp sfpgmlvciy fiilficgny illnvflaia
      781 vdnladaesl tsaqkeeeee kerkklarta spekkqeiek taveeetkee kielksitad
      841 gesppatkin mddyqpnene ekspypptea paeedeeepe mpvgprprpm selhlkekav
      901 pmpdasaffi fspnnrfrvh chrivndnif tnlilffill ssislaaedp vrhlsfrnqi
      961 lgnadyvfts iftleiilkm taygaflhkg sfcrnyfnil dllvvsvsli sfgiqssain
     1021 vvkilrvlrv lrplrainra kglkhvvqcv fvairtigni vivttllqfm facigvqlfk
     1081 gklysctdss kqtaaecrgy yitykdgevn qpmiqprswe nskfdfdnvl tammalftvs
     1141 tfegwpelly rsidshmedv gpiynhrvei siffiiyiii iaffmmnifv gfvivtfqeq
     1201 geqeykncel dknqrqcvey alkarplrry ipknqyqykv wyvvnstyfe ylmfvlilln
     1261 ticlamqhyg qscmfkeamn ilnmlftglf tvemvlklia fkpkgyfsdp wnvfdflivi
     1321 gsiidvilse tnhyfcdawn tfdalivvgs ivdiaitevn paehtqcssf mnaeensris
     1381 itffrlfrvm rlvkllsrge girtllwtfi ksfqalpyva llivmlffiy avigmqvfgk
     1441 ialndttein rnnnfqtfpq avlllfrcat geawqeimla clpdkkcdpe sepanstead
     1501 hscgssfavf yfisfymlca fliinlfvav imdnfdyltr dwsilgphhl defkriwaey
     1561 dpeakgrikh ldvvtllrri qpplgfgklc phrvackrlv smnmplnsdg tvmfnatlfa
     1621 lvrtalrikt egnleqanee lraiikkiwk rtsmklldqv vppagddevt vgkfyatfli
     1681 qeyfrkfkkr keqglvgkps qrnalslqag lrtlhdigpe irraisgdlt aeeeldkamk
     1741 eavsaasedd ifrragglfg nhvsyyqsdg rsafpqtftt qrplhinksg nnqgdtesps
     1801 heklvdstft pssysssgsn aninnannta lccfpnppsy pstvstvegh aaplspticv
     1861 qeapwklpsk rthyyetlgc sssrdsqlai vcqeevsqde tydenlnedi eycsepslls
     1921 temlayqdde nrqltppenn kgedarhspk kgflcssalg rrasfhlecl krqknqgvdv
     1981 sqktvlplhl vhhqalavag lspllqrshs pttfsrlcat ppatpcsrgw pqqtiptlrl
     2041 dgaessekln ssfpsvhcss rypdnsscss prrarpvslt vpsqtggssr qfhgsagslv
     2101 eavliseglm qfaqdpkfie vttqeladac dmtieemena adnilngnsk qspngnllpf
     2161 vncrdpgqds ageeeeevqn pdcrksqeel kdsriyissl
//
LOCUS       XP_053909833            2196 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent L-type calcium channel subunit alpha-1C isoform
            X3 [Cuculus canorus].
ACCESSION   XP_053909833
VERSION     XP_053909833.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053858.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2196
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2196
                     /product="voltage-dependent L-type calcium channel subunit
                     alpha-1C isoform X3"
                     /calculated_mol_wt=247062
     Region          150..444
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          551..792
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          929..1204
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1246..1543
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1552..1605
                     /region_name="GPHH"
                     /note="Voltage-dependent L-type calcium channel,
                     IQ-associated; pfam16905"
                     /db_xref="CDD:465306"
     Region          1615..1689
                     /region_name="Ca_chan_IQ"
                     /note="Voltage gated calcium channel IQ domain; pfam08763"
                     /db_xref="CDD:462591"
     Region          1714..2141
                     /region_name="CAC1F_C"
                     /note="Voltage-gated calcium channel subunit alpha,
                     C-term; pfam16885"
                     /db_xref="CDD:465298"
     CDS             1..2196
                     /gene="CACNA1C"
                     /coded_by="XM_054053858.1:788..7378"
                     /db_xref="GeneID:104055901"
ORIGIN      
        1 mfqalvrqay hplpshqpge petkykgklv hetqlncfyi kpggsnygsp rpahanmnan
       61 aaaglapehi ptpgaalswq aaidaarqak lmgsagnati stasstqrkr qqygkqkkqg
      121 tttatrppra llcltlknpi rracisivew kpfeiiillt ifancvalai yipfpeddsn
      181 atnsnlerve ylfliiftve aflkviaygl lfhpnaylrn gwnlldfiiv vvglfsaile
      241 qatkadggns iggkgagfdv kalrafrvlr plrlvsgvps lqvvlnsiik amvpllhial
      301 lvlfviiiya iiglelfmgk mhktcyhvqg glidtpaedd pspcapqsah grqcqngtec
      361 kagwegpkhg itnfdnfafa mltvfqcitm egwtdvlywm qdamgyelpw vyfvslvifg
      421 sffvlnlvlg vlsgefsker ekakargdfq klrekqqlee dlkgyldwit qaedidpene
      481 degmdeekpr nmsmptsete svntdnvpga diegencgar lahriskskf srywrrwnrf
      541 crrkcraavk snvfywlvif lvflntltia sehynqpdwl tevqdtankv llalftaeml
      601 lkmyslglqa yfvslfnrfd cfivcggile tilvetkims plgisvlrcv rllrifkitr
      661 ywnslsnlva sllnsvrsia slllllflfi iifsllgmql fggkfnfdem qtrrstfdnf
      721 pqslltvfqi ltgedwnsvm ydgimayggp sfpgmlvciy fiilficgny illnvflaia
      781 vdnladaesl tsaqkeeeee kerkklarta spekkqeiek taveeetkee kielksitad
      841 gesppatkin mddyqpnene ekspypptea paeedeeepe mpvgprprpm selhlkekav
      901 pmpdasaffi fspnnrfrvh chrivndnif tnlilffill ssislaaedp vrhlsfrnqi
      961 lgnadyvfts iftleiilkm taygaflhkg sfcrnyfnil dllvvsvsli sfgiqssain
     1021 vvkilrvlrv lrplrainra kglkhvvqcv fvairtigni vivttllqfm facigvqlfk
     1081 gklysctdss kqtaaecrgy yitykdgevn qpmiqprswe nskfdfdnvl tammalftvs
     1141 tfegwpelly rsidshmedv gpiynhrvei siffiiyiii iaffmmnifv gfvivtfqeq
     1201 geqeykncel dknqrqcvey alkarplrry ipknqyqykv wyvvnstyfe ylmfvlilln
     1261 ticlamqhyg qscmfkeamn ilnmlftglf tvemvlklia fkpkgyfsdp wnvfdflivi
     1321 gsiidvilse tnhyfcdawn tfdalivvgs ivdiaitevn paehtqcssf mnaeensris
     1381 itffrlfrvm rlvkllsrge girtllwtfi ksfqalpyva llivmlffiy avigmqvfgk
     1441 ialndttein rnnnfqtfpq avlllfrcat geawqeimla clpdkkcdpe sepanstead
     1501 hscgssfavf yfisfymlca fliinlfvav imdnfdyltr dwsilgphhl defkriwaey
     1561 dpeakgrikh ldvvtllrri qpplgfgklc phrvackrlv smnmplnsdg tvmfnatlfa
     1621 lvrtalrikt egnleqanee lraiikkiwk rtsmklldqv vppagddevt vgkfyatfli
     1681 qeyfrkfkkr keqglvgkps qrnalslqfa vlqaglrtlh digpeirrai sgdltaeeel
     1741 dkamkeavsa aseddifrra gglfgnhvsy yqsdgrsafp qtfttqrplh inksgnnqgd
     1801 tespsheklv dstftpssys ssgsnaninn anntalccfp nppsypstvs tveghaapls
     1861 pticvqeapw klpskssssr dsqlaivcqe evsqdetyde nlnedieycs epsllsteml
     1921 ayqddenrql tppennkged arhspkkgfl cssalgrras fhleclkrqk nqgvdvsqkt
     1981 vlplhlvhhq alavaglspl lqrshspttf srlcatppat pcsrgwpqqt iptlrldgae
     2041 sseklnssfp svhcssrypd nsscssprra rpvsltvpsq tggssrqfhg sagslveavl
     2101 iseglmqfaq dpkfievttq eladacdmti eemenaadni lngnskqspn gnllpfvncr
     2161 dpgqdsagee eeevqnpdcr ksqeelkdsr iyissl
//
LOCUS       XP_053909902            2194 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent L-type calcium channel subunit alpha-1C isoform
            X4 [Cuculus canorus].
ACCESSION   XP_053909902
VERSION     XP_053909902.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053927.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2194
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2194
                     /product="voltage-dependent L-type calcium channel subunit
                     alpha-1C isoform X4"
                     /calculated_mol_wt=246979
     Region          150..444
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          551..792
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          929..1204
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1246..1532
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1541..1594
                     /region_name="GPHH"
                     /note="Voltage-dependent L-type calcium channel,
                     IQ-associated; pfam16905"
                     /db_xref="CDD:465306"
     Region          1604..1678
                     /region_name="Ca_chan_IQ"
                     /note="Voltage gated calcium channel IQ domain; pfam08763"
                     /db_xref="CDD:462591"
     Region          1703..2139
                     /region_name="CAC1F_C"
                     /note="Voltage-gated calcium channel subunit alpha,
                     C-term; pfam16885"
                     /db_xref="CDD:465298"
     CDS             1..2194
                     /gene="CACNA1C"
                     /coded_by="XM_054053927.1:788..7372"
                     /db_xref="GeneID:104055901"
ORIGIN      
        1 mfqalvrqay hplpshqpge petkykgklv hetqlncfyi kpggsnygsp rpahanmnan
       61 aaaglapehi ptpgaalswq aaidaarqak lmgsagnati stasstqrkr qqygkqkkqg
      121 tttatrppra llcltlknpi rracisivew kpfeiiillt ifancvalai yipfpeddsn
      181 atnsnlerve ylfliiftve aflkviaygl lfhpnaylrn gwnlldfiiv vvglfsaile
      241 qatkadggns iggkgagfdv kalrafrvlr plrlvsgvps lqvvlnsiik amvpllhial
      301 lvlfviiiya iiglelfmgk mhktcyhvqg glidtpaedd pspcapqsah grqcqngtec
      361 kagwegpkhg itnfdnfafa mltvfqcitm egwtdvlywm qdamgyelpw vyfvslvifg
      421 sffvlnlvlg vlsgefsker ekakargdfq klrekqqlee dlkgyldwit qaedidpene
      481 degmdeekpr nmsmptsete svntdnvpga diegencgar lahriskskf srywrrwnrf
      541 crrkcraavk snvfywlvif lvflntltia sehynqpdwl tevqdtankv llalftaeml
      601 lkmyslglqa yfvslfnrfd cfivcggile tilvetkims plgisvlrcv rllrifkitr
      661 ywnslsnlva sllnsvrsia slllllflfi iifsllgmql fggkfnfdem qtrrstfdnf
      721 pqslltvfqi ltgedwnsvm ydgimayggp sfpgmlvciy fiilficgny illnvflaia
      781 vdnladaesl tsaqkeeeee kerkklarta spekkqeiek taveeetkee kielksitad
      841 gesppatkin mddyqpnene ekspypptea paeedeeepe mpvgprprpm selhlkekav
      901 pmpdasaffi fspnnrfrvh chrivndnif tnlilffill ssislaaedp vrhlsfrnqi
      961 lgnadyvfts iftleiilkm taygaflhkg sfcrnyfnil dllvvsvsli sfgiqssain
     1021 vvkilrvlrv lrplrainra kglkhvvqcv fvairtigni vivttllqfm facigvqlfk
     1081 gklysctdss kqtaaecrgy yitykdgevn qpmiqprswe nskfdfdnvl tammalftvs
     1141 tfegwpelly rsidshmedv gpiynhrvei siffiiyiii iaffmmnifv gfvivtfqeq
     1201 geqeykncel dknqrqcvey alkarplrry ipknqyqykv wyvvnstyfe ylmfvlilln
     1261 ticlamqhyg qscmfkeamn ilnmlftglf tvemvlklia fkpkgyfsdp wnvfdflivi
     1321 gsiidvilse tnhyfcdawn tfdalivvgs ivdiaitevn naeensrisi tffrlfrvmr
     1381 lvkllsrgeg irtllwtfik sfqalpyval livmlffiya vigmqvfgki alndtteinr
     1441 nnnfqtfpqa vlllfrcatg eawqeimlac lpdkkcdpes epansteadh scgssfavfy
     1501 fisfymlcaf liinlfvavi mdnfdyltrd wsilgphhld efkriwaeyd peakgrikhl
     1561 dvvtllrriq pplgfgklcp hrvackrlvs mnmplnsdgt vmfnatlfal vrtalrikte
     1621 gnleqaneel raiikkiwkr tsmklldqvv ppagddevtv gkfyatfliq eyfrkfkkrk
     1681 eqglvgkpsq rnalslqfav lqaglrtlhd igpeirrais gdltaeeeld kamkeavsaa
     1741 seddifrrag glfgnhvsyy qsdgrsafpq tfttqrplhi nksgnnqgdt espsheklvd
     1801 stftpssyss sgsnaninna nntalccfpn ppsypstvst veghaaplsp ticvqeapwk
     1861 lpskrthyye tlgcsssrds qlaivcqeev sqdetydenl nedieycsep sllstemlay
     1921 qddenrqltp pennkgedar hspkkgflcs salgrrasfh leclkrqknq gvdvsqktvl
     1981 plhlvhhqal avaglspllq rshspttfsr lcatppatpc srgwpqqtip tlrldgaess
     2041 eklnssfpsv hcssrypdns scssprrarp vsltvpsqtg gssrqfhgsa gslveavlis
     2101 eglmqfaqdp kfievttqel adacdmtiee menaadniln gnskqspngn llpfvncrdp
     2161 gqdsageeee evqnpdcrks qeelkdsriy issl
//
LOCUS       XP_053909985            2191 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent L-type calcium channel subunit alpha-1C isoform
            X5 [Cuculus canorus].
ACCESSION   XP_053909985
VERSION     XP_053909985.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054010.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2191
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2191
                     /product="voltage-dependent L-type calcium channel subunit
                     alpha-1C isoform X5"
                     /calculated_mol_wt=246503
     Region          150..444
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          551..792
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          929..1204
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1246..1543
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1552..1605
                     /region_name="GPHH"
                     /note="Voltage-dependent L-type calcium channel,
                     IQ-associated; pfam16905"
                     /db_xref="CDD:465306"
     Region          1615..1689
                     /region_name="Ca_chan_IQ"
                     /note="Voltage gated calcium channel IQ domain; pfam08763"
                     /db_xref="CDD:462591"
     Region          1709..2136
                     /region_name="CAC1F_C"
                     /note="Voltage-gated calcium channel subunit alpha,
                     C-term; pfam16885"
                     /db_xref="CDD:465298"
     CDS             1..2191
                     /gene="CACNA1C"
                     /coded_by="XM_054054010.1:788..7363"
                     /db_xref="GeneID:104055901"
ORIGIN      
        1 mfqalvrqay hplpshqpge petkykgklv hetqlncfyi kpggsnygsp rpahanmnan
       61 aaaglapehi ptpgaalswq aaidaarqak lmgsagnati stasstqrkr qqygkqkkqg
      121 tttatrppra llcltlknpi rracisivew kpfeiiillt ifancvalai yipfpeddsn
      181 atnsnlerve ylfliiftve aflkviaygl lfhpnaylrn gwnlldfiiv vvglfsaile
      241 qatkadggns iggkgagfdv kalrafrvlr plrlvsgvps lqvvlnsiik amvpllhial
      301 lvlfviiiya iiglelfmgk mhktcyhvqg glidtpaedd pspcapqsah grqcqngtec
      361 kagwegpkhg itnfdnfafa mltvfqcitm egwtdvlywm qdamgyelpw vyfvslvifg
      421 sffvlnlvlg vlsgefsker ekakargdfq klrekqqlee dlkgyldwit qaedidpene
      481 degmdeekpr nmsmptsete svntdnvpga diegencgar lahriskskf srywrrwnrf
      541 crrkcraavk snvfywlvif lvflntltia sehynqpdwl tevqdtankv llalftaeml
      601 lkmyslglqa yfvslfnrfd cfivcggile tilvetkims plgisvlrcv rllrifkitr
      661 ywnslsnlva sllnsvrsia slllllflfi iifsllgmql fggkfnfdem qtrrstfdnf
      721 pqslltvfqi ltgedwnsvm ydgimayggp sfpgmlvciy fiilficgny illnvflaia
      781 vdnladaesl tsaqkeeeee kerkklarta spekkqeiek taveeetkee kielksitad
      841 gesppatkin mddyqpnene ekspypptea paeedeeepe mpvgprprpm selhlkekav
      901 pmpdasaffi fspnnrfrvh chrivndnif tnlilffill ssislaaedp vrhlsfrnqi
      961 lgnadyvfts iftleiilkm taygaflhkg sfcrnyfnil dllvvsvsli sfgiqssain
     1021 vvkilrvlrv lrplrainra kglkhvvqcv fvairtigni vivttllqfm facigvqlfk
     1081 gklysctdss kqtaaecrgy yitykdgevn qpmiqprswe nskfdfdnvl tammalftvs
     1141 tfegwpelly rsidshmedv gpiynhrvei siffiiyiii iaffmmnifv gfvivtfqeq
     1201 geqeykncel dknqrqcvey alkarplrry ipknqyqykv wyvvnstyfe ylmfvlilln
     1261 ticlamqhyg qscmfkeamn ilnmlftglf tvemvlklia fkpkgyfsdp wnvfdflivi
     1321 gsiidvilse tnhyfcdawn tfdalivvgs ivdiaitevn paehtqcssf mnaeensris
     1381 itffrlfrvm rlvkllsrge girtllwtfi ksfqalpyva llivmlffiy avigmqvfgk
     1441 ialndttein rnnnfqtfpq avlllfrcat geawqeimla clpdkkcdpe sepanstead
     1501 hscgssfavf yfisfymlca fliinlfvav imdnfdyltr dwsilgphhl defkriwaey
     1561 dpeakgrikh ldvvtllrri qpplgfgklc phrvackrlv smnmplnsdg tvmfnatlfa
     1621 lvrtalrikt egnleqanee lraiikkiwk rtsmklldqv vppagddevt vgkfyatfli
     1681 qeyfrkfkkr keqglvgkps qrnalslqag lrtlhdigpe irraisgdlt aeeeldkamk
     1741 eavsaasedd ifrragglfg nhvsyyqsdg rsafpqtftt qrplhinksg nnqgdtesps
     1801 heklvdstft pssysssgsn aninnannta lccfpnppsy pstvstvegh aaplspticv
     1861 qeapwklpsk ssssrdsqla ivcqeevsqd etydenlned ieycsepsll stemlayqdd
     1921 enrqltppen nkgedarhsp kkgflcssal grrasfhlec lkrqknqgvd vsqktvlplh
     1981 lvhhqalava glspllqrsh spttfsrlca tppatpcsrg wpqqtiptlr ldgaessekl
     2041 nssfpsvhcs srypdnsscs sprrarpvsl tvpsqtggss rqfhgsagsl veavlisegl
     2101 mqfaqdpkfi evttqelada cdmtieemen aadnilngns kqspngnllp fvncrdpgqd
     2161 sageeeeevq npdcrksqee lkdsriyiss l
//
LOCUS       XP_053910065            2189 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent L-type calcium channel subunit alpha-1C isoform
            X6 [Cuculus canorus].
ACCESSION   XP_053910065
VERSION     XP_053910065.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054090.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2189
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2189
                     /product="voltage-dependent L-type calcium channel subunit
                     alpha-1C isoform X6"
                     /calculated_mol_wt=246421
     Region          150..444
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          551..792
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          929..1204
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1246..1532
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1541..1594
                     /region_name="GPHH"
                     /note="Voltage-dependent L-type calcium channel,
                     IQ-associated; pfam16905"
                     /db_xref="CDD:465306"
     Region          1604..1678
                     /region_name="Ca_chan_IQ"
                     /note="Voltage gated calcium channel IQ domain; pfam08763"
                     /db_xref="CDD:462591"
     Region          1698..2134
                     /region_name="CAC1F_C"
                     /note="Voltage-gated calcium channel subunit alpha,
                     C-term; pfam16885"
                     /db_xref="CDD:465298"
     CDS             1..2189
                     /gene="CACNA1C"
                     /coded_by="XM_054054090.1:787..7356"
                     /db_xref="GeneID:104055901"
ORIGIN      
        1 mfqalvrqay hplpshqpge petkykgklv hetqlncfyi kpggsnygsp rpahanmnan
       61 aaaglapehi ptpgaalswq aaidaarqak lmgsagnati stasstqrkr qqygkqkkqg
      121 tttatrppra llcltlknpi rracisivew kpfeiiillt ifancvalai yipfpeddsn
      181 atnsnlerve ylfliiftve aflkviaygl lfhpnaylrn gwnlldfiiv vvglfsaile
      241 qatkadggns iggkgagfdv kalrafrvlr plrlvsgvps lqvvlnsiik amvpllhial
      301 lvlfviiiya iiglelfmgk mhktcyhvqg glidtpaedd pspcapqsah grqcqngtec
      361 kagwegpkhg itnfdnfafa mltvfqcitm egwtdvlywm qdamgyelpw vyfvslvifg
      421 sffvlnlvlg vlsgefsker ekakargdfq klrekqqlee dlkgyldwit qaedidpene
      481 degmdeekpr nmsmptsete svntdnvpga diegencgar lahriskskf srywrrwnrf
      541 crrkcraavk snvfywlvif lvflntltia sehynqpdwl tevqdtankv llalftaeml
      601 lkmyslglqa yfvslfnrfd cfivcggile tilvetkims plgisvlrcv rllrifkitr
      661 ywnslsnlva sllnsvrsia slllllflfi iifsllgmql fggkfnfdem qtrrstfdnf
      721 pqslltvfqi ltgedwnsvm ydgimayggp sfpgmlvciy fiilficgny illnvflaia
      781 vdnladaesl tsaqkeeeee kerkklarta spekkqeiek taveeetkee kielksitad
      841 gesppatkin mddyqpnene ekspypptea paeedeeepe mpvgprprpm selhlkekav
      901 pmpdasaffi fspnnrfrvh chrivndnif tnlilffill ssislaaedp vrhlsfrnqi
      961 lgnadyvfts iftleiilkm taygaflhkg sfcrnyfnil dllvvsvsli sfgiqssain
     1021 vvkilrvlrv lrplrainra kglkhvvqcv fvairtigni vivttllqfm facigvqlfk
     1081 gklysctdss kqtaaecrgy yitykdgevn qpmiqprswe nskfdfdnvl tammalftvs
     1141 tfegwpelly rsidshmedv gpiynhrvei siffiiyiii iaffmmnifv gfvivtfqeq
     1201 geqeykncel dknqrqcvey alkarplrry ipknqyqykv wyvvnstyfe ylmfvlilln
     1261 ticlamqhyg qscmfkeamn ilnmlftglf tvemvlklia fkpkgyfsdp wnvfdflivi
     1321 gsiidvilse tnhyfcdawn tfdalivvgs ivdiaitevn naeensrisi tffrlfrvmr
     1381 lvkllsrgeg irtllwtfik sfqalpyval livmlffiya vigmqvfgki alndtteinr
     1441 nnnfqtfpqa vlllfrcatg eawqeimlac lpdkkcdpes epansteadh scgssfavfy
     1501 fisfymlcaf liinlfvavi mdnfdyltrd wsilgphhld efkriwaeyd peakgrikhl
     1561 dvvtllrriq pplgfgklcp hrvackrlvs mnmplnsdgt vmfnatlfal vrtalrikte
     1621 gnleqaneel raiikkiwkr tsmklldqvv ppagddevtv gkfyatfliq eyfrkfkkrk
     1681 eqglvgkpsq rnalslqagl rtlhdigpei rraisgdlta eeeldkamke avsaaseddi
     1741 frragglfgn hvsyyqsdgr safpqtfttq rplhinksgn nqgdtespsh eklvdstftp
     1801 ssysssgsna ninnanntal ccfpnppsyp stvstvegha aplspticvq eapwklpskr
     1861 thyyetlgcs ssrdsqlaiv cqeevsqdet ydenlnedie ycsepsllst emlayqdden
     1921 rqltppennk gedarhspkk gflcssalgr rasfhleclk rqknqgvdvs qktvlplhlv
     1981 hhqalavagl spllqrshsp ttfsrlcatp patpcsrgwp qqtiptlrld gaesseklns
     2041 sfpsvhcssr ypdnsscssp rrarpvsltv psqtggssrq fhgsagslve avliseglmq
     2101 faqdpkfiev ttqeladacd mtieemenaa dnilngnskq spngnllpfv ncrdpgqdsa
     2161 geeeeevqnp dcrksqeelk dsriyissl
//
LOCUS       XP_053910146            2178 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent L-type calcium channel subunit alpha-1C isoform
            X7 [Cuculus canorus].
ACCESSION   XP_053910146
VERSION     XP_053910146.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054171.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2178
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2178
                     /product="voltage-dependent L-type calcium channel subunit
                     alpha-1C isoform X7"
                     /calculated_mol_wt=245248
     Region          123..417
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          524..765
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          902..1177
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1219..1516
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1525..1578
                     /region_name="GPHH"
                     /note="Voltage-dependent L-type calcium channel,
                     IQ-associated; pfam16905"
                     /db_xref="CDD:465306"
     Region          1588..1662
                     /region_name="Ca_chan_IQ"
                     /note="Voltage gated calcium channel IQ domain; pfam08763"
                     /db_xref="CDD:462591"
     Region          1687..2123
                     /region_name="CAC1F_C"
                     /note="Voltage-gated calcium channel subunit alpha,
                     C-term; pfam16885"
                     /db_xref="CDD:465298"
     CDS             1..2178
                     /gene="CACNA1C"
                     /coded_by="XM_054054171.1:411..6947"
                     /db_xref="GeneID:104055901"
ORIGIN      
        1 mvnenkrmyi peenhqgsny gsprpahanm nanaaaglap ehiptpgaal swqaaidaar
       61 qaklmgsagn atistasstq rkrqqygkqk kqgtttatrp prallcltlk npirracisi
      121 vewkpfeiii lltifancva laiyipfped dsnatnsnle rveylfliif tveaflkvia
      181 ygllfhpnay lrngwnlldf iivvvglfsa ileqatkadg gnsiggkgag fdvkalrafr
      241 vlrplrlvsg vpslqvvlns iikamvpllh iallvlfvii iyaiiglelf mgkmhktcyh
      301 vqgglidtpa eddpspcapq sahgrqcqng teckagwegp khgitnfdnf afamltvfqc
      361 itmegwtdvl ywmqdamgye lpwvyfvslv ifgsffvlnl vlgvlsgefs kerekakarg
      421 dfqklrekqq leedlkgyld witqaedidp enedegmdee kprnmsmpts etesvntdnv
      481 pgadiegenc garlahrisk skfsrywrrw nrfcrrkcra avksnvfywl viflvflntl
      541 tiasehynqp dwltevqdta nkvllalfta emllkmyslg lqayfvslfn rfdcfivcgg
      601 iletilvetk imsplgisvl rcvrllrifk itrywnslsn lvasllnsvr siaslllllf
      661 lfiiifsllg mqlfggkfnf demqtrrstf dnfpqslltv fqiltgedwn svmydgimay
      721 ggpsfpgmlv ciyfiilfic gnyillnvfl aiavdnlada esltsaqkee eeekerkkla
      781 rtaspekkqe iektaveeet keekielksi tadgesppat kinmddyqpn eneekspypp
      841 teapaeedee epempvgprp rpmselhlke kavpmpdasa ffifspnnrf rvhchrivnd
      901 niftnlilff illssislaa edpvrhlsfr nqilgnadyv ftsiftleii lkmtaygafl
      961 hkgsfcrnyf nildllvvsv slisfgiqss ainvvkilrv lrvlrplrai nrakglkhvv
     1021 qcvfvairti gnivivttll qfmfacigvq lfkgklysct dsskqtaaec rgyyitykdg
     1081 evnqpmiqpr swenskfdfd nvltammalf tvstfegwpe llyrsidshm edvgpiynhr
     1141 veisiffiiy iiiiaffmmn ifvgfvivtf qeqgeqeykn celdknqrqc veyalkarpl
     1201 rryipknqyq ykvwyvvnst yfeylmfvli llnticlamq hygqscmfke amnilnmlft
     1261 glftvemvlk liafkpkgyf sdpwnvfdfl ivigsiidvi lsetnhyfcd awntfdaliv
     1321 vgsivdiait evnpaehtqc ssfmnaeens risitffrlf rvmrlvklls rgegirtllw
     1381 tfiksfqalp yvallivmlf fiyavigmqv fgkialndtt einrnnnfqt fpqavlllfr
     1441 catgeawqei mlaclpdkkc dpesepanst eadhscgssf avfyfisfym lcafliinlf
     1501 vavimdnfdy ltrdwsilgp hhldefkriw aeydpeakgr ikhldvvtll rriqpplgfg
     1561 klcphrvack rlvsmnmpln sdgtvmfnat lfalvrtalr iktegnleqa neelraiikk
     1621 iwkrtsmkll dqvvppagdd evtvgkfyat fliqeyfrkf kkrkeqglvg kpsqrnalsl
     1681 qfavlqaglr tlhdigpeir raisgdltae eeldkamkea vsaaseddif rragglfgnh
     1741 vsyyqsdgrs afpqtfttqr plhinksgnn qgdtespshe klvdstftps sysssgsnan
     1801 innanntalc cfpnppsyps tvstveghaa plspticvqe apwklpskrt hyyetlgcss
     1861 srdsqlaivc qeevsqdety denlnediey csepsllste mlayqddenr qltppennkg
     1921 edarhspkkg flcssalgrr asfhleclkr qknqgvdvsq ktvlplhlvh hqalavagls
     1981 pllqrshspt tfsrlcatpp atpcsrgwpq qtiptlrldg aesseklnss fpsvhcssry
     2041 pdnsscsspr rarpvsltvp sqtggssrqf hgsagslvea vliseglmqf aqdpkfievt
     2101 tqeladacdm tieemenaad nilngnskqs pngnllpfvn crdpgqdsag eeeeevqnpd
     2161 crksqeelkd sriyissl
//
LOCUS       XP_053910208            2177 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent L-type calcium channel subunit alpha-1C isoform
            X8 [Cuculus canorus].
ACCESSION   XP_053910208
VERSION     XP_053910208.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054233.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2177
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2177
                     /product="voltage-dependent L-type calcium channel subunit
                     alpha-1C isoform X8"
                     /calculated_mol_wt=245042
     Region          150..444
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          551..792
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          929..1204
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1246..1515
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1524..1577
                     /region_name="GPHH"
                     /note="Voltage-dependent L-type calcium channel,
                     IQ-associated; pfam16905"
                     /db_xref="CDD:465306"
     Region          1587..1661
                     /region_name="Ca_chan_IQ"
                     /note="Voltage gated calcium channel IQ domain; pfam08763"
                     /db_xref="CDD:462591"
     Region          1686..2122
                     /region_name="CAC1F_C"
                     /note="Voltage-gated calcium channel subunit alpha,
                     C-term; pfam16885"
                     /db_xref="CDD:465298"
     CDS             1..2177
                     /gene="CACNA1C"
                     /coded_by="XM_054054233.1:787..7320"
                     /db_xref="GeneID:104055901"
ORIGIN      
        1 mfqalvrqay hplpshqpge petkykgklv hetqlncfyi kpggsnygsp rpahanmnan
       61 aaaglapehi ptpgaalswq aaidaarqak lmgsagnati stasstqrkr qqygkqkkqg
      121 tttatrppra llcltlknpi rracisivew kpfeiiillt ifancvalai yipfpeddsn
      181 atnsnlerve ylfliiftve aflkviaygl lfhpnaylrn gwnlldfiiv vvglfsaile
      241 qatkadggns iggkgagfdv kalrafrvlr plrlvsgvps lqvvlnsiik amvpllhial
      301 lvlfviiiya iiglelfmgk mhktcyhvqg glidtpaedd pspcapqsah grqcqngtec
      361 kagwegpkhg itnfdnfafa mltvfqcitm egwtdvlywm qdamgyelpw vyfvslvifg
      421 sffvlnlvlg vlsgefsker ekakargdfq klrekqqlee dlkgyldwit qaedidpene
      481 degmdeekpr nmsmptsete svntdnvpga diegencgar lahriskskf srywrrwnrf
      541 crrkcraavk snvfywlvif lvflntltia sehynqpdwl tevqdtankv llalftaeml
      601 lkmyslglqa yfvslfnrfd cfivcggile tilvetkims plgisvlrcv rllrifkitr
      661 ywnslsnlva sllnsvrsia slllllflfi iifsllgmql fggkfnfdem qtrrstfdnf
      721 pqslltvfqi ltgedwnsvm ydgimayggp sfpgmlvciy fiilficgny illnvflaia
      781 vdnladaesl tsaqkeeeee kerkklarta spekkqeiek taveeetkee kielksitad
      841 gesppatkin mddyqpnene ekspypptea paeedeeepe mpvgprprpm selhlkekav
      901 pmpdasaffi fspnnrfrvh chrivndnif tnlilffill ssislaaedp vrhlsfrnqi
      961 lgnadyvfts iftleiilkm taygaflhkg sfcrnyfnil dllvvsvsli sfgiqssain
     1021 vvkilrvlrv lrplrainra kglkhvvqcv fvairtigni vivttllqfm facigvqlfk
     1081 gklysctdss kqtaaecrgy yitykdgevn qpmiqprswe nskfdfdnvl tammalftvs
     1141 tfegwpelly rsidshmedv gpiynhrvei siffiiyiii iaffmmnifv gfvivtfqeq
     1201 geqeykncel dknqrqcvey alkarplrry ipknqyqykv wyvvnstyfe ylmfvlilln
     1261 ticlamqhyg qscmfkeamn ilnmlftglf tvemvlklia fkpkhyfcda wntfdalivv
     1321 gsivdiaite vnpaehtqcs sfmnaeensr isitffrlfr vmrlvkllsr gegirtllwt
     1381 fiksfqalpy vallivmlff iyavigmqvf gkialndtte inrnnnfqtf pqavlllfrc
     1441 atgeawqeim laclpdkkcd pesepanste adhscgssfa vfyfisfyml cafliinlfv
     1501 avimdnfdyl trdwsilgph hldefkriwa eydpeakgri khldvvtllr riqpplgfgk
     1561 lcphrvackr lvsmnmplns dgtvmfnatl falvrtalri ktegnleqan eelraiikki
     1621 wkrtsmklld qvvppagdde vtvgkfyatf liqeyfrkfk krkeqglvgk psqrnalslq
     1681 favlqaglrt lhdigpeirr aisgdltaee eldkamkeav saaseddifr ragglfgnhv
     1741 syyqsdgrsa fpqtfttqrp lhinksgnnq gdtespshek lvdstftpss ysssgsnani
     1801 nnanntalcc fpnppsypst vstveghaap lspticvqea pwklpskrth yyetlgcsss
     1861 rdsqlaivcq eevsqdetyd enlnedieyc sepsllstem layqddenrq ltppennkge
     1921 darhspkkgf lcssalgrra sfhleclkrq knqgvdvsqk tvlplhlvhh qalavaglsp
     1981 llqrshsptt fsrlcatppa tpcsrgwpqq tiptlrldga esseklnssf psvhcssryp
     2041 dnsscssprr arpvsltvps qtggssrqfh gsagslveav liseglmqfa qdpkfievtt
     2101 qeladacdmt ieemenaadn ilngnskqsp ngnllpfvnc rdpgqdsage eeeevqnpdc
     2161 rksqeelkds riyissl
//
LOCUS       XP_053910284            2177 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent L-type calcium channel subunit alpha-1C isoform
            X9 [Cuculus canorus].
ACCESSION   XP_053910284
VERSION     XP_053910284.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054309.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2177
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2177
                     /product="voltage-dependent L-type calcium channel subunit
                     alpha-1C isoform X9"
                     /calculated_mol_wt=245038
     Region          150..444
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          551..792
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          929..1204
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1246..1515
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1524..1577
                     /region_name="GPHH"
                     /note="Voltage-dependent L-type calcium channel,
                     IQ-associated; pfam16905"
                     /db_xref="CDD:465306"
     Region          1587..1661
                     /region_name="Ca_chan_IQ"
                     /note="Voltage gated calcium channel IQ domain; pfam08763"
                     /db_xref="CDD:462591"
     Region          1686..2122
                     /region_name="CAC1F_C"
                     /note="Voltage-gated calcium channel subunit alpha,
                     C-term; pfam16885"
                     /db_xref="CDD:465298"
     CDS             1..2177
                     /gene="CACNA1C"
                     /coded_by="XM_054054309.1:787..7320"
                     /db_xref="GeneID:104055901"
ORIGIN      
        1 mfqalvrqay hplpshqpge petkykgklv hetqlncfyi kpggsnygsp rpahanmnan
       61 aaaglapehi ptpgaalswq aaidaarqak lmgsagnati stasstqrkr qqygkqkkqg
      121 tttatrppra llcltlknpi rracisivew kpfeiiillt ifancvalai yipfpeddsn
      181 atnsnlerve ylfliiftve aflkviaygl lfhpnaylrn gwnlldfiiv vvglfsaile
      241 qatkadggns iggkgagfdv kalrafrvlr plrlvsgvps lqvvlnsiik amvpllhial
      301 lvlfviiiya iiglelfmgk mhktcyhvqg glidtpaedd pspcapqsah grqcqngtec
      361 kagwegpkhg itnfdnfafa mltvfqcitm egwtdvlywv ndaigrdwpw iyfvtliiig
      421 sffvlnlvlg vlsgefsker ekakargdfq klrekqqlee dlkgyldwit qaedidpene
      481 degmdeekpr nmsmptsete svntdnvpga diegencgar lahriskskf srywrrwnrf
      541 crrkcraavk snvfywlvif lvflntltia sehynqpdwl tevqdtankv llalftaeml
      601 lkmyslglqa yfvslfnrfd cfivcggile tilvetkims plgisvlrcv rllrifkitr
      661 ywnslsnlva sllnsvrsia slllllflfi iifsllgmql fggkfnfdem qtrrstfdnf
      721 pqslltvfqi ltgedwnsvm ydgimayggp sfpgmlvciy fiilficgny illnvflaia
      781 vdnladaesl tsaqkeeeee kerkklarta spekkqeiek taveeetkee kielksitad
      841 gesppatkin mddyqpnene ekspypptea paeedeeepe mpvgprprpm selhlkekav
      901 pmpdasaffi fspnnrfrvh chrivndnif tnlilffill ssislaaedp vrhlsfrnqi
      961 lgnadyvfts iftleiilkm taygaflhkg sfcrnyfnil dllvvsvsli sfgiqssain
     1021 vvkilrvlrv lrplrainra kglkhvvqcv fvairtigni vivttllqfm facigvqlfk
     1081 gklysctdss kqtaaecrgy yitykdgevn qpmiqprswe nskfdfdnvl tammalftvs
     1141 tfegwpelly rsidshmedv gpiynhrvei siffiiyiii iaffmmnifv gfvivtfqeq
     1201 geqeykncel dknqrqcvey alkarplrry ipknqyqykv wyvvnstyfe ylmfvlilln
     1261 ticlamqhyg qscmfkeamn ilnmlftglf tvemvlklia fkpkhyfcda wntfdalivv
     1321 gsivdiaite vnpaehtqcs sfmnaeensr isitffrlfr vmrlvkllsr gegirtllwt
     1381 fiksfqalpy vallivmlff iyavigmqvf gkialndtte inrnnnfqtf pqavlllfrc
     1441 atgeawqeim laclpdkkcd pesepanste adhscgssfa vfyfisfyml cafliinlfv
     1501 avimdnfdyl trdwsilgph hldefkriwa eydpeakgri khldvvtllr riqpplgfgk
     1561 lcphrvackr lvsmnmplns dgtvmfnatl falvrtalri ktegnleqan eelraiikki
     1621 wkrtsmklld qvvppagdde vtvgkfyatf liqeyfrkfk krkeqglvgk psqrnalslq
     1681 favlqaglrt lhdigpeirr aisgdltaee eldkamkeav saaseddifr ragglfgnhv
     1741 syyqsdgrsa fpqtfttqrp lhinksgnnq gdtespshek lvdstftpss ysssgsnani
     1801 nnanntalcc fpnppsypst vstveghaap lspticvqea pwklpskrth yyetlgcsss
     1861 rdsqlaivcq eevsqdetyd enlnedieyc sepsllstem layqddenrq ltppennkge
     1921 darhspkkgf lcssalgrra sfhleclkrq knqgvdvsqk tvlplhlvhh qalavaglsp
     1981 llqrshsptt fsrlcatppa tpcsrgwpqq tiptlrldga esseklnssf psvhcssryp
     2041 dnsscssprr arpvsltvps qtggssrqfh gsagslveav liseglmqfa qdpkfievtt
     2101 qeladacdmt ieemenaadn ilngnskqsp ngnllpfvnc rdpgqdsage eeeevqnpdc
     2161 rksqeelkds riyissl
//
LOCUS       XP_053910366            2172 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent L-type calcium channel subunit alpha-1C isoform
            X10 [Cuculus canorus].
ACCESSION   XP_053910366
VERSION     XP_053910366.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054391.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2172
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2172
                     /product="voltage-dependent L-type calcium channel subunit
                     alpha-1C isoform X10"
                     /calculated_mol_wt=244480
     Region          150..444
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          551..792
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          929..1204
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1246..1515
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1524..1577
                     /region_name="GPHH"
                     /note="Voltage-dependent L-type calcium channel,
                     IQ-associated; pfam16905"
                     /db_xref="CDD:465306"
     Region          1587..1661
                     /region_name="Ca_chan_IQ"
                     /note="Voltage gated calcium channel IQ domain; pfam08763"
                     /db_xref="CDD:462591"
     Region          1681..2117
                     /region_name="CAC1F_C"
                     /note="Voltage-gated calcium channel subunit alpha,
                     C-term; pfam16885"
                     /db_xref="CDD:465298"
     CDS             1..2172
                     /gene="CACNA1C"
                     /coded_by="XM_054054391.1:787..7305"
                     /db_xref="GeneID:104055901"
ORIGIN      
        1 mfqalvrqay hplpshqpge petkykgklv hetqlncfyi kpggsnygsp rpahanmnan
       61 aaaglapehi ptpgaalswq aaidaarqak lmgsagnati stasstqrkr qqygkqkkqg
      121 tttatrppra llcltlknpi rracisivew kpfeiiillt ifancvalai yipfpeddsn
      181 atnsnlerve ylfliiftve aflkviaygl lfhpnaylrn gwnlldfiiv vvglfsaile
      241 qatkadggns iggkgagfdv kalrafrvlr plrlvsgvps lqvvlnsiik amvpllhial
      301 lvlfviiiya iiglelfmgk mhktcyhvqg glidtpaedd pspcapqsah grqcqngtec
      361 kagwegpkhg itnfdnfafa mltvfqcitm egwtdvlywv ndaigrdwpw iyfvtliiig
      421 sffvlnlvlg vlsgefsker ekakargdfq klrekqqlee dlkgyldwit qaedidpene
      481 degmdeekpr nmsmptsete svntdnvpga diegencgar lahriskskf srywrrwnrf
      541 crrkcraavk snvfywlvif lvflntltia sehynqpdwl tevqdtankv llalftaeml
      601 lkmyslglqa yfvslfnrfd cfivcggile tilvetkims plgisvlrcv rllrifkitr
      661 ywnslsnlva sllnsvrsia slllllflfi iifsllgmql fggkfnfdem qtrrstfdnf
      721 pqslltvfqi ltgedwnsvm ydgimayggp sfpgmlvciy fiilficgny illnvflaia
      781 vdnladaesl tsaqkeeeee kerkklarta spekkqeiek taveeetkee kielksitad
      841 gesppatkin mddyqpnene ekspypptea paeedeeepe mpvgprprpm selhlkekav
      901 pmpdasaffi fspnnrfrvh chrivndnif tnlilffill ssislaaedp vrhlsfrnqi
      961 lgnadyvfts iftleiilkm taygaflhkg sfcrnyfnil dllvvsvsli sfgiqssain
     1021 vvkilrvlrv lrplrainra kglkhvvqcv fvairtigni vivttllqfm facigvqlfk
     1081 gklysctdss kqtaaecrgy yitykdgevn qpmiqprswe nskfdfdnvl tammalftvs
     1141 tfegwpelly rsidshmedv gpiynhrvei siffiiyiii iaffmmnifv gfvivtfqeq
     1201 geqeykncel dknqrqcvey alkarplrry ipknqyqykv wyvvnstyfe ylmfvlilln
     1261 ticlamqhyg qscmfkeamn ilnmlftglf tvemvlklia fkpkhyfcda wntfdalivv
     1321 gsivdiaite vnpaehtqcs sfmnaeensr isitffrlfr vmrlvkllsr gegirtllwt
     1381 fiksfqalpy vallivmlff iyavigmqvf gkialndtte inrnnnfqtf pqavlllfrc
     1441 atgeawqeim laclpdkkcd pesepanste adhscgssfa vfyfisfyml cafliinlfv
     1501 avimdnfdyl trdwsilgph hldefkriwa eydpeakgri khldvvtllr riqpplgfgk
     1561 lcphrvackr lvsmnmplns dgtvmfnatl falvrtalri ktegnleqan eelraiikki
     1621 wkrtsmklld qvvppagdde vtvgkfyatf liqeyfrkfk krkeqglvgk psqrnalslq
     1681 aglrtlhdig peirraisgd ltaeeeldka mkeavsaase ddifrraggl fgnhvsyyqs
     1741 dgrsafpqtf ttqrplhink sgnnqgdtes psheklvdst ftpssysssg snaninnann
     1801 talccfpnpp sypstvstve ghaaplspti cvqeapwklp skrthyyetl gcsssrdsql
     1861 aivcqeevsq detydenlne dieycsepsl lstemlayqd denrqltppe nnkgedarhs
     1921 pkkgflcssa lgrrasfhle clkrqknqgv dvsqktvlpl hlvhhqalav aglspllqrs
     1981 hspttfsrlc atppatpcsr gwpqqtiptl rldgaessek lnssfpsvhc ssrypdnssc
     2041 ssprrarpvs ltvpsqtggs srqfhgsags lveavliseg lmqfaqdpkf ievttqelad
     2101 acdmtieeme naadnilngn skqspngnll pfvncrdpgq dsageeeeev qnpdcrksqe
     2161 elkdsriyis sl
//
LOCUS       XP_053910450            2172 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent L-type calcium channel subunit alpha-1C isoform
            X11 [Cuculus canorus].
ACCESSION   XP_053910450
VERSION     XP_053910450.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054475.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2172
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2172
                     /product="voltage-dependent L-type calcium channel subunit
                     alpha-1C isoform X11"
                     /calculated_mol_wt=244619
     Region          150..444
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          551..792
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          929..1204
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1246..1515
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1524..1577
                     /region_name="GPHH"
                     /note="Voltage-dependent L-type calcium channel,
                     IQ-associated; pfam16905"
                     /db_xref="CDD:465306"
     Region          1587..1661
                     /region_name="Ca_chan_IQ"
                     /note="Voltage gated calcium channel IQ domain; pfam08763"
                     /db_xref="CDD:462591"
     Region          1681..2117
                     /region_name="CAC1F_C"
                     /note="Voltage-gated calcium channel subunit alpha,
                     C-term; pfam16885"
                     /db_xref="CDD:465298"
     CDS             1..2172
                     /gene="CACNA1C"
                     /coded_by="XM_054054475.1:787..7305"
                     /db_xref="GeneID:104055901"
ORIGIN      
        1 mfqalvrqay hplpshqpge petkykgklv hetqlncfyi kpggsnygsp rpahanmnan
       61 aaaglapehi ptpgaalswq aaidaarqak lmgsagnati stasstqrkr qqygkqkkqg
      121 tttatrppra llcltlknpi rracisivew kpfeiiillt ifancvalai yipfpeddsn
      181 atnsnlerve ylfliiftve aflkviaygl lfhpnaylrn gwnlldfiiv vvglfsaile
      241 qatkadggns iggkgagfdv kalrafrvlr plrlvsgvps lqvvlnsiik amvpllhial
      301 lvlfviiiya iiglelfmgk mhktcyhvqg glidtpaedd pspcapqsah grqcqngtec
      361 kagwegpkhg itnfdnfafa mltvfqcitm egwtdvlywm qdamgyelpw vyfvslvifg
      421 sffvlnlvlg vlsgefsker ekakargdfq klrekqqlee dlkgyldwit qaedidpene
      481 degmdeekpr nmsmptsete svntdnvpga diegencgar lahriskskf srywrrwnrf
      541 crrkcraavk snvfywlvif lvflntltia sehynqpdwl tevqdtankv llalftaeml
      601 lkmyslglqa yfvslfnrfd cfivcggile tilvetkims plgisvlrcv rllrifkitr
      661 ywnslsnlva sllnsvrsia slllllflfi iifsllgmql fggkfnfdem qtrrstfdnf
      721 pqslltvfqi ltgedwnsvm ydgimayggp sfpgmlvciy fiilficgny illnvflaia
      781 vdnladaesl tsaqkeeeee kerkklarta spekkqeiek taveeetkee kielksitad
      841 gesppatkin mddyqpnene ekspypptea paeedeeepe mpvgprprpm selhlkekav
      901 pmpdasaffi fspnnrfrvh chrivndnif tnlilffill ssislaaedp vrhlsfrnqi
      961 lfyfdivftv iftieialkm taygaflhkg sfcrnyfnil dllvvsvsli sfgiqssain
     1021 vvkilrvlrv lrplrainra kglkhvvqcv fvairtigni vivttllqfm facigvqlfk
     1081 gklysctdss kqtaaecrgy yitykdgevn qpmiqprswe nskfdfdnvl tammalftvs
     1141 tfegwpelly rsidshmedv gpiynhrvei siffiiyiii iaffmmnifv gfvivtfqeq
     1201 geqeykncel dknqrqcvey alkarplrry ipknqyqykv wyvvnstyfe ylmfvlilln
     1261 ticlamqhyg qscmfkeamn ilnmlftglf tvemvlklia fkpkhyfcda wntfdalivv
     1321 gsivdiaite vnpaehtqcs sfmnaeensr isitffrlfr vmrlvkllsr gegirtllwt
     1381 fiksfqalpy vallivmlff iyavigmqvf gkialndtte inrnnnfqtf pqavlllfrc
     1441 atgeawqeim laclpdkkcd pesepanste adhscgssfa vfyfisfyml cafliinlfv
     1501 avimdnfdyl trdwsilgph hldefkriwa eydpeakgri khldvvtllr riqpplgfgk
     1561 lcphrvackr lvsmnmplns dgtvmfnatl falvrtalri ktegnleqan eelraiikki
     1621 wkrtsmklld qvvppagdde vtvgkfyatf liqeyfrkfk krkeqglvgk psqrnalslq
     1681 aglrtlhdig peirraisgd ltaeeeldka mkeavsaase ddifrraggl fgnhvsyyqs
     1741 dgrsafpqtf ttqrplhink sgnnqgdtes psheklvdst ftpssysssg snaninnann
     1801 talccfpnpp sypstvstve ghaaplspti cvqeapwklp skrthyyetl gcsssrdsql
     1861 aivcqeevsq detydenlne dieycsepsl lstemlayqd denrqltppe nnkgedarhs
     1921 pkkgflcssa lgrrasfhle clkrqknqgv dvsqktvlpl hlvhhqalav aglspllqrs
     1981 hspttfsrlc atppatpcsr gwpqqtiptl rldgaessek lnssfpsvhc ssrypdnssc
     2041 ssprrarpvs ltvpsqtggs srqfhgsags lveavliseg lmqfaqdpkf ievttqelad
     2101 acdmtieeme naadnilngn skqspngnll pfvncrdpgq dsageeeeev qnpdcrksqe
     2161 elkdsriyis sl
//
LOCUS       XP_053910523            2172 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent L-type calcium channel subunit alpha-1C isoform
            X12 [Cuculus canorus].
ACCESSION   XP_053910523
VERSION     XP_053910523.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054548.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2172
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2172
                     /product="voltage-dependent L-type calcium channel subunit
                     alpha-1C isoform X12"
                     /calculated_mol_wt=244667
     Region          150..444
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          551..792
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          929..1204
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1246..1515
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1524..1577
                     /region_name="GPHH"
                     /note="Voltage-dependent L-type calcium channel,
                     IQ-associated; pfam16905"
                     /db_xref="CDD:465306"
     Region          1587..1661
                     /region_name="Ca_chan_IQ"
                     /note="Voltage gated calcium channel IQ domain; pfam08763"
                     /db_xref="CDD:462591"
     Region          1681..2117
                     /region_name="CAC1F_C"
                     /note="Voltage-gated calcium channel subunit alpha,
                     C-term; pfam16885"
                     /db_xref="CDD:465298"
     CDS             1..2172
                     /gene="CACNA1C"
                     /coded_by="XM_054054548.1:787..7305"
                     /db_xref="GeneID:104055901"
ORIGIN      
        1 mfqalvrqay hplpshqpge petkykgklv hetqlncfyi kpggsnygsp rpahanmnan
       61 aaaglapehi ptpgaalswq aaidaarqak lmgsagnati stasstqrkr qqygkqkkqg
      121 tttatrppra llcltlknpi rracisivew kpfeiiillt ifancvalai yipfpeddsn
      181 atnsnlerve ylfliiftve aflkviaygl lfhpnaylrn gwnlldfiiv vvglfsaile
      241 qatkadggns iggkgagfdv kalrafrvlr plrlvsgvps lqvvlnsiik amvpllhial
      301 lvlfviiiya iiglelfmgk mhktcyhvqg glidtpaedd pspcapqsah grqcqngtec
      361 kagwegpkhg itnfdnfafa mltvfqcitm egwtdvlywm qdamgyelpw vyfvslvifg
      421 sffvlnlvlg vlsgefsker ekakargdfq klrekqqlee dlkgyldwit qaedidpene
      481 degmdeekpr nmsmptsete svntdnvpga diegencgar lahriskskf srywrrwnrf
      541 crrkcraavk snvfywlvif lvflntltia sehynqpdwl tevqdtankv llalftaeml
      601 lkmyslglqa yfvslfnrfd cfivcggile tilvetkims plgisvlrcv rllrifkitr
      661 ywnslsnlva sllnsvrsia slllllflfi iifsllgmql fggkfnfdem qtrrstfdnf
      721 pqslltvfqi ltgedwnsvm ydgimayggp sfpgmlvciy fiilficgny illnvflaia
      781 vdnladaesl tsaqkeeeee kerkklarta spekkqeiek taveeetkee kielksitad
      841 gesppatkin mddyqpnene ekspypptea paeedeeepe mpvgprprpm selhlkekav
      901 pmpdasaffi fspnnrfrvh chrivndnif tnlilffill ssislaaedp vrhlsfrnqi
      961 lfyfdivftv iftieialkm taygaflhkg sfcrnyfnil dllvvsvsli sfgiqssain
     1021 vvkilrvlrv lrplrainra kglkhvvqcv fvairtigni vivttllqfm facigvqlfk
     1081 gklysctdss kqtaaecrgy yitykdgevn qpmiqprswe nskfdfdnvl tammalftvs
     1141 tfegwpelly rsidshmedv gpiynhrvei siffiiyiii iaffmmnifv gfvivtfqeq
     1201 geqeykncel dknqrqcvey alkarplrry ipknqyqykv wyvvnstyfe ylmfvlilln
     1261 ticlamqhyg qscmfkeamn ilnmlftglf tvemvlklia fkpkgyfsdp wnvfdflivi
     1321 gsiidvilse tnpaehtqcs sfmnaeensr isitffrlfr vmrlvkllsr gegirtllwt
     1381 fiksfqalpy vallivmlff iyavigmqvf gkialndtte inrnnnfqtf pqavlllfrc
     1441 atgeawqeim laclpdkkcd pesepanste adhscgssfa vfyfisfyml cafliinlfv
     1501 avimdnfdyl trdwsilgph hldefkriwa eydpeakgri khldvvtllr riqpplgfgk
     1561 lcphrvackr lvsmnmplns dgtvmfnatl falvrtalri ktegnleqan eelraiikki
     1621 wkrtsmklld qvvppagdde vtvgkfyatf liqeyfrkfk krkeqglvgk psqrnalslq
     1681 aglrtlhdig peirraisgd ltaeeeldka mkeavsaase ddifrraggl fgnhvsyyqs
     1741 dgrsafpqtf ttqrplhink sgnnqgdtes psheklvdst ftpssysssg snaninnann
     1801 talccfpnpp sypstvstve ghaaplspti cvqeapwklp skrthyyetl gcsssrdsql
     1861 aivcqeevsq detydenlne dieycsepsl lstemlayqd denrqltppe nnkgedarhs
     1921 pkkgflcssa lgrrasfhle clkrqknqgv dvsqktvlpl hlvhhqalav aglspllqrs
     1981 hspttfsrlc atppatpcsr gwpqqtiptl rldgaessek lnssfpsvhc ssrypdnssc
     2041 ssprrarpvs ltvpsqtggs srqfhgsags lveavliseg lmqfaqdpkf ievttqelad
     2101 acdmtieeme naadnilngn skqspngnll pfvncrdpgq dsageeeeev qnpdcrksqe
     2161 elkdsriyis sl
//
LOCUS       XP_053910596            2166 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent L-type calcium channel subunit alpha-1C isoform
            X13 [Cuculus canorus].
ACCESSION   XP_053910596
VERSION     XP_053910596.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054621.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2166
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2166
                     /product="voltage-dependent L-type calcium channel subunit
                     alpha-1C isoform X13"
                     /calculated_mol_wt=243819
     Region          150..444
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          551..792
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          929..1204
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1246..1504
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1513..1566
                     /region_name="GPHH"
                     /note="Voltage-dependent L-type calcium channel,
                     IQ-associated; pfam16905"
                     /db_xref="CDD:465306"
     Region          1576..1650
                     /region_name="Ca_chan_IQ"
                     /note="Voltage gated calcium channel IQ domain; pfam08763"
                     /db_xref="CDD:462591"
     Region          1675..2111
                     /region_name="CAC1F_C"
                     /note="Voltage-gated calcium channel subunit alpha,
                     C-term; pfam16885"
                     /db_xref="CDD:465298"
     CDS             1..2166
                     /gene="CACNA1C"
                     /coded_by="XM_054054621.1:788..7288"
                     /db_xref="GeneID:104055901"
ORIGIN      
        1 mfqalvrqay hplpshqpge petkykgklv hetqlncfyi kpggsnygsp rpahanmnan
       61 aaaglapehi ptpgaalswq aaidaarqak lmgsagnati stasstqrkr qqygkqkkqg
      121 tttatrppra llcltlknpi rracisivew kpfeiiillt ifancvalai yipfpeddsn
      181 atnsnlerve ylfliiftve aflkviaygl lfhpnaylrn gwnlldfiiv vvglfsaile
      241 qatkadggns iggkgagfdv kalrafrvlr plrlvsgvps lqvvlnsiik amvpllhial
      301 lvlfviiiya iiglelfmgk mhktcyhvqg glidtpaedd pspcapqsah grqcqngtec
      361 kagwegpkhg itnfdnfafa mltvfqcitm egwtdvlywv ndaigrdwpw iyfvtliiig
      421 sffvlnlvlg vlsgefsker ekakargdfq klrekqqlee dlkgyldwit qaedidpene
      481 degmdeekpr nmsmptsete svntdnvpga diegencgar lahriskskf srywrrwnrf
      541 crrkcraavk snvfywlvif lvflntltia sehynqpdwl tevqdtankv llalftaeml
      601 lkmyslglqa yfvslfnrfd cfivcggile tilvetkims plgisvlrcv rllrifkitr
      661 ywnslsnlva sllnsvrsia slllllflfi iifsllgmql fggkfnfdem qtrrstfdnf
      721 pqslltvfqi ltgedwnsvm ydgimayggp sfpgmlvciy fiilficgny illnvflaia
      781 vdnladaesl tsaqkeeeee kerkklarta spekkqeiek taveeetkee kielksitad
      841 gesppatkin mddyqpnene ekspypptea paeedeeepe mpvgprprpm selhlkekav
      901 pmpdasaffi fspnnrfrvh chrivndnif tnlilffill ssislaaedp vrhlsfrnqi
      961 lgnadyvfts iftleiilkm taygaflhkg sfcrnyfnil dllvvsvsli sfgiqssain
     1021 vvkilrvlrv lrplrainra kglkhvvqcv fvairtigni vivttllqfm facigvqlfk
     1081 gklysctdss kqtaaecrgy yitykdgevn qpmiqprswe nskfdfdnvl tammalftvs
     1141 tfegwpelly rsidshmedv gpiynhrvei siffiiyiii iaffmmnifv gfvivtfqeq
     1201 geqeykncel dknqrqcvey alkarplrry ipknqyqykv wyvvnstyfe ylmfvlilln
     1261 ticlamqhyg qscmfkeamn ilnmlftglf tvemvlklia fkpkhyfcda wntfdalivv
     1321 gsivdiaite vnnaeensri sitffrlfrv mrlvkllsrg egirtllwtf iksfqalpyv
     1381 allivmlffi yavigmqvfg kialndttei nrnnnfqtfp qavlllfrca tgeawqeiml
     1441 aclpdkkcdp esepanstea dhscgssfav fyfisfymlc afliinlfva vimdnfdylt
     1501 rdwsilgphh ldefkriwae ydpeakgrik hldvvtllrr iqpplgfgkl cphrvackrl
     1561 vsmnmplnsd gtvmfnatlf alvrtalrik tegnleqane elraiikkiw krtsmklldq
     1621 vvppagddev tvgkfyatfl iqeyfrkfkk rkeqglvgkp sqrnalslqf avlqaglrtl
     1681 hdigpeirra isgdltaeee ldkamkeavs aaseddifrr agglfgnhvs yyqsdgrsaf
     1741 pqtfttqrpl hinksgnnqg dtespshekl vdstftpssy sssgsnanin nanntalccf
     1801 pnppsypstv stveghaapl spticvqeap wklpskrthy yetlgcsssr dsqlaivcqe
     1861 evsqdetyde nlnedieycs epsllsteml ayqddenrql tppennkged arhspkkgfl
     1921 cssalgrras fhleclkrqk nqgvdvsqkt vlplhlvhhq alavaglspl lqrshspttf
     1981 srlcatppat pcsrgwpqqt iptlrldgae sseklnssfp svhcssrypd nsscssprra
     2041 rpvsltvpsq tggssrqfhg sagslveavl iseglmqfaq dpkfievttq eladacdmti
     2101 eemenaadni lngnskqspn gnllpfvncr dpgqdsagee eeevqnpdcr ksqeelkdsr
     2161 iyissl
//
LOCUS       XP_053910667            2163 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent L-type calcium channel subunit alpha-1C isoform
            X14 [Cuculus canorus].
ACCESSION   XP_053910667
VERSION     XP_053910667.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054692.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2163
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2163
                     /product="voltage-dependent L-type calcium channel subunit
                     alpha-1C isoform X14"
                     /calculated_mol_wt=243346
     Region          150..444
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          551..792
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          929..1204
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1246..1515
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1524..1577
                     /region_name="GPHH"
                     /note="Voltage-dependent L-type calcium channel,
                     IQ-associated; pfam16905"
                     /db_xref="CDD:465306"
     Region          1587..1661
                     /region_name="Ca_chan_IQ"
                     /note="Voltage gated calcium channel IQ domain; pfam08763"
                     /db_xref="CDD:462591"
     Region          1681..2108
                     /region_name="CAC1F_C"
                     /note="Voltage-gated calcium channel subunit alpha,
                     C-term; pfam16885"
                     /db_xref="CDD:465298"
     CDS             1..2163
                     /gene="CACNA1C"
                     /coded_by="XM_054054692.1:787..7278"
                     /db_xref="GeneID:104055901"
ORIGIN      
        1 mfqalvrqay hplpshqpge petkykgklv hetqlncfyi kpggsnygsp rpahanmnan
       61 aaaglapehi ptpgaalswq aaidaarqak lmgsagnati stasstqrkr qqygkqkkqg
      121 tttatrppra llcltlknpi rracisivew kpfeiiillt ifancvalai yipfpeddsn
      181 atnsnlerve ylfliiftve aflkviaygl lfhpnaylrn gwnlldfiiv vvglfsaile
      241 qatkadggns iggkgagfdv kalrafrvlr plrlvsgvps lqvvlnsiik amvpllhial
      301 lvlfviiiya iiglelfmgk mhktcyhvqg glidtpaedd pspcapqsah grqcqngtec
      361 kagwegpkhg itnfdnfafa mltvfqcitm egwtdvlywm qdamgyelpw vyfvslvifg
      421 sffvlnlvlg vlsgefsker ekakargdfq klrekqqlee dlkgyldwit qaedidpene
      481 degmdeekpr nmsmptsete svntdnvpga diegencgar lahriskskf srywrrwnrf
      541 crrkcraavk snvfywlvif lvflntltia sehynqpdwl tevqdtankv llalftaeml
      601 lkmyslglqa yfvslfnrfd cfivcggile tilvetkims plgisvlrcv rllrifkitr
      661 ywnslsnlva sllnsvrsia slllllflfi iifsllgmql fggkfnfdem qtrrstfdnf
      721 pqslltvfqi ltgedwnsvm ydgimayggp sfpgmlvciy fiilficgny illnvflaia
      781 vdnladaesl tsaqkeeeee kerkklarta spekkqeiek taveeetkee kielksitad
      841 gesppatkin mddyqpnene ekspypptea paeedeeepe mpvgprprpm selhlkekav
      901 pmpdasaffi fspnnrfrvh chrivndnif tnlilffill ssislaaedp vrhlsfrnqi
      961 lgnadyvfts iftleiilkm taygaflhkg sfcrnyfnil dllvvsvsli sfgiqssain
     1021 vvkilrvlrv lrplrainra kglkhvvqcv fvairtigni vivttllqfm facigvqlfk
     1081 gklysctdss kqtaaecrgy yitykdgevn qpmiqprswe nskfdfdnvl tammalftvs
     1141 tfegwpelly rsidshmedv gpiynhrvei siffiiyiii iaffmmnifv gfvivtfqeq
     1201 geqeykncel dknqrqcvey alkarplrry ipknqyqykv wyvvnstyfe ylmfvlilln
     1261 ticlamqhyg qscmfkeamn ilnmlftglf tvemvlklia fkpkhyfcda wntfdalivv
     1321 gsivdiaite vnpaehtqcs sfmnaeensr isitffrlfr vmrlvkllsr gegirtllwt
     1381 fiksfqalpy vallivmlff iyavigmqvf gkialndtte inrnnnfqtf pqavlllfrc
     1441 atgeawqeim laclpdkkcd pesepanste adhscgssfa vfyfisfyml cafliinlfv
     1501 avimdnfdyl trdwsilgph hldefkriwa eydpeakgri khldvvtllr riqpplgfgk
     1561 lcphrvackr lvsmnmplns dgtvmfnatl falvrtalri ktegnleqan eelraiikki
     1621 wkrtsmklld qvvppagdde vtvgkfyatf liqeyfrkfk krkeqglvgk psqrnalslq
     1681 aglrtlhdig peirraisgd ltaeeeldka mkeavsaase ddifrraggl fgnhvsyyqs
     1741 dgrsafpqtf ttqrplhink sgnnqgdtes psheklvdst ftpssysssg snaninnann
     1801 talccfpnpp sypstvstve ghaaplspti cvqeapwklp skssssrdsq laivcqeevs
     1861 qdetydenln edieycseps llstemlayq ddenrqltpp ennkgedarh spkkgflcss
     1921 algrrasfhl eclkrqknqg vdvsqktvlp lhlvhhqala vaglspllqr shspttfsrl
     1981 catppatpcs rgwpqqtipt lrldgaesse klnssfpsvh cssrypdnss cssprrarpv
     2041 sltvpsqtgg ssrqfhgsag slveavlise glmqfaqdpk fievttqela dacdmtieem
     2101 enaadnilng nskqspngnl lpfvncrdpg qdsageeeee vqnpdcrksq eelkdsriyi
     2161 ssl
//
LOCUS       XP_053910744            2163 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent L-type calcium channel subunit alpha-1C isoform
            X15 [Cuculus canorus].
ACCESSION   XP_053910744
VERSION     XP_053910744.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054769.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2163
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2163
                     /product="voltage-dependent L-type calcium channel subunit
                     alpha-1C isoform X15"
                     /calculated_mol_wt=243342
     Region          150..444
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          551..792
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          929..1204
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1246..1515
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1524..1577
                     /region_name="GPHH"
                     /note="Voltage-dependent L-type calcium channel,
                     IQ-associated; pfam16905"
                     /db_xref="CDD:465306"
     Region          1587..1661
                     /region_name="Ca_chan_IQ"
                     /note="Voltage gated calcium channel IQ domain; pfam08763"
                     /db_xref="CDD:462591"
     Region          1681..2108
                     /region_name="CAC1F_C"
                     /note="Voltage-gated calcium channel subunit alpha,
                     C-term; pfam16885"
                     /db_xref="CDD:465298"
     CDS             1..2163
                     /gene="CACNA1C"
                     /coded_by="XM_054054769.1:787..7278"
                     /db_xref="GeneID:104055901"
ORIGIN      
        1 mfqalvrqay hplpshqpge petkykgklv hetqlncfyi kpggsnygsp rpahanmnan
       61 aaaglapehi ptpgaalswq aaidaarqak lmgsagnati stasstqrkr qqygkqkkqg
      121 tttatrppra llcltlknpi rracisivew kpfeiiillt ifancvalai yipfpeddsn
      181 atnsnlerve ylfliiftve aflkviaygl lfhpnaylrn gwnlldfiiv vvglfsaile
      241 qatkadggns iggkgagfdv kalrafrvlr plrlvsgvps lqvvlnsiik amvpllhial
      301 lvlfviiiya iiglelfmgk mhktcyhvqg glidtpaedd pspcapqsah grqcqngtec
      361 kagwegpkhg itnfdnfafa mltvfqcitm egwtdvlywv ndaigrdwpw iyfvtliiig
      421 sffvlnlvlg vlsgefsker ekakargdfq klrekqqlee dlkgyldwit qaedidpene
      481 degmdeekpr nmsmptsete svntdnvpga diegencgar lahriskskf srywrrwnrf
      541 crrkcraavk snvfywlvif lvflntltia sehynqpdwl tevqdtankv llalftaeml
      601 lkmyslglqa yfvslfnrfd cfivcggile tilvetkims plgisvlrcv rllrifkitr
      661 ywnslsnlva sllnsvrsia slllllflfi iifsllgmql fggkfnfdem qtrrstfdnf
      721 pqslltvfqi ltgedwnsvm ydgimayggp sfpgmlvciy fiilficgny illnvflaia
      781 vdnladaesl tsaqkeeeee kerkklarta spekkqeiek taveeetkee kielksitad
      841 gesppatkin mddyqpnene ekspypptea paeedeeepe mpvgprprpm selhlkekav
      901 pmpdasaffi fspnnrfrvh chrivndnif tnlilffill ssislaaedp vrhlsfrnqi
      961 lgnadyvfts iftleiilkm taygaflhkg sfcrnyfnil dllvvsvsli sfgiqssain
     1021 vvkilrvlrv lrplrainra kglkhvvqcv fvairtigni vivttllqfm facigvqlfk
     1081 gklysctdss kqtaaecrgy yitykdgevn qpmiqprswe nskfdfdnvl tammalftvs
     1141 tfegwpelly rsidshmedv gpiynhrvei siffiiyiii iaffmmnifv gfvivtfqeq
     1201 geqeykncel dknqrqcvey alkarplrry ipknqyqykv wyvvnstyfe ylmfvlilln
     1261 ticlamqhyg qscmfkeamn ilnmlftglf tvemvlklia fkpkhyfcda wntfdalivv
     1321 gsivdiaite vnpaehtqcs sfmnaeensr isitffrlfr vmrlvkllsr gegirtllwt
     1381 fiksfqalpy vallivmlff iyavigmqvf gkialndtte inrnnnfqtf pqavlllfrc
     1441 atgeawqeim laclpdkkcd pesepanste adhscgssfa vfyfisfyml cafliinlfv
     1501 avimdnfdyl trdwsilgph hldefkriwa eydpeakgri khldvvtllr riqpplgfgk
     1561 lcphrvackr lvsmnmplns dgtvmfnatl falvrtalri ktegnleqan eelraiikki
     1621 wkrtsmklld qvvppagdde vtvgkfyatf liqeyfrkfk krkeqglvgk psqrnalslq
     1681 aglrtlhdig peirraisgd ltaeeeldka mkeavsaase ddifrraggl fgnhvsyyqs
     1741 dgrsafpqtf ttqrplhink sgnnqgdtes psheklvdst ftpssysssg snaninnann
     1801 talccfpnpp sypstvstve ghaaplspti cvqeapwklp skssssrdsq laivcqeevs
     1861 qdetydenln edieycseps llstemlayq ddenrqltpp ennkgedarh spkkgflcss
     1921 algrrasfhl eclkrqknqg vdvsqktvlp lhlvhhqala vaglspllqr shspttfsrl
     1981 catppatpcs rgwpqqtipt lrldgaesse klnssfpsvh cssrypdnss cssprrarpv
     2041 sltvpsqtgg ssrqfhgsag slveavlise glmqfaqdpk fievttqela dacdmtieem
     2101 enaadnilng nskqspngnl lpfvncrdpg qdsageeeee vqnpdcrksq eelkdsriyi
     2161 ssl
//
LOCUS       XP_053910812            2163 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent L-type calcium channel subunit alpha-1C isoform
            X16 [Cuculus canorus].
ACCESSION   XP_053910812
VERSION     XP_053910812.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054837.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2163
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2163
                     /product="voltage-dependent L-type calcium channel subunit
                     alpha-1C isoform X16"
                     /calculated_mol_wt=243481
     Region          150..444
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          551..792
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          929..1204
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1246..1515
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1524..1577
                     /region_name="GPHH"
                     /note="Voltage-dependent L-type calcium channel,
                     IQ-associated; pfam16905"
                     /db_xref="CDD:465306"
     Region          1587..1661
                     /region_name="Ca_chan_IQ"
                     /note="Voltage gated calcium channel IQ domain; pfam08763"
                     /db_xref="CDD:462591"
     Region          1681..2108
                     /region_name="CAC1F_C"
                     /note="Voltage-gated calcium channel subunit alpha,
                     C-term; pfam16885"
                     /db_xref="CDD:465298"
     CDS             1..2163
                     /gene="CACNA1C"
                     /coded_by="XM_054054837.1:787..7278"
                     /db_xref="GeneID:104055901"
ORIGIN      
        1 mfqalvrqay hplpshqpge petkykgklv hetqlncfyi kpggsnygsp rpahanmnan
       61 aaaglapehi ptpgaalswq aaidaarqak lmgsagnati stasstqrkr qqygkqkkqg
      121 tttatrppra llcltlknpi rracisivew kpfeiiillt ifancvalai yipfpeddsn
      181 atnsnlerve ylfliiftve aflkviaygl lfhpnaylrn gwnlldfiiv vvglfsaile
      241 qatkadggns iggkgagfdv kalrafrvlr plrlvsgvps lqvvlnsiik amvpllhial
      301 lvlfviiiya iiglelfmgk mhktcyhvqg glidtpaedd pspcapqsah grqcqngtec
      361 kagwegpkhg itnfdnfafa mltvfqcitm egwtdvlywm qdamgyelpw vyfvslvifg
      421 sffvlnlvlg vlsgefsker ekakargdfq klrekqqlee dlkgyldwit qaedidpene
      481 degmdeekpr nmsmptsete svntdnvpga diegencgar lahriskskf srywrrwnrf
      541 crrkcraavk snvfywlvif lvflntltia sehynqpdwl tevqdtankv llalftaeml
      601 lkmyslglqa yfvslfnrfd cfivcggile tilvetkims plgisvlrcv rllrifkitr
      661 ywnslsnlva sllnsvrsia slllllflfi iifsllgmql fggkfnfdem qtrrstfdnf
      721 pqslltvfqi ltgedwnsvm ydgimayggp sfpgmlvciy fiilficgny illnvflaia
      781 vdnladaesl tsaqkeeeee kerkklarta spekkqeiek taveeetkee kielksitad
      841 gesppatkin mddyqpnene ekspypptea paeedeeepe mpvgprprpm selhlkekav
      901 pmpdasaffi fspnnrfrvh chrivndnif tnlilffill ssislaaedp vrhlsfrnqi
      961 lfyfdivftv iftieialkm taygaflhkg sfcrnyfnil dllvvsvsli sfgiqssain
     1021 vvkilrvlrv lrplrainra kglkhvvqcv fvairtigni vivttllqfm facigvqlfk
     1081 gklysctdss kqtaaecrgy yitykdgevn qpmiqprswe nskfdfdnvl tammalftvs
     1141 tfegwpelly rsidshmedv gpiynhrvei siffiiyiii iaffmmnifv gfvivtfqeq
     1201 geqeykncel dknqrqcvey alkarplrry ipknqyqykv wyvvnstyfe ylmfvlilln
     1261 ticlamqhyg qscmfkeamn ilnmlftglf tvemvlklia fkpkhyfcda wntfdalivv
     1321 gsivdiaite vnpaehtqcs sfmnaeensr isitffrlfr vmrlvkllsr gegirtllwt
     1381 fiksfqalpy vallivmlff iyavigmqvf gkialndtte inrnnnfqtf pqavlllfrc
     1441 atgeawqeim laclpdkkcd pesepanste adhscgssfa vfyfisfyml cafliinlfv
     1501 avimdnfdyl trdwsilgph hldefkriwa eydpeakgri khldvvtllr riqpplgfgk
     1561 lcphrvackr lvsmnmplns dgtvmfnatl falvrtalri ktegnleqan eelraiikki
     1621 wkrtsmklld qvvppagdde vtvgkfyatf liqeyfrkfk krkeqglvgk psqrnalslq
     1681 aglrtlhdig peirraisgd ltaeeeldka mkeavsaase ddifrraggl fgnhvsyyqs
     1741 dgrsafpqtf ttqrplhink sgnnqgdtes psheklvdst ftpssysssg snaninnann
     1801 talccfpnpp sypstvstve ghaaplspti cvqeapwklp skssssrdsq laivcqeevs
     1861 qdetydenln edieycseps llstemlayq ddenrqltpp ennkgedarh spkkgflcss
     1921 algrrasfhl eclkrqknqg vdvsqktvlp lhlvhhqala vaglspllqr shspttfsrl
     1981 catppatpcs rgwpqqtipt lrldgaesse klnssfpsvh cssrypdnss cssprrarpv
     2041 sltvpsqtgg ssrqfhgsag slveavlise glmqfaqdpk fievttqela dacdmtieem
     2101 enaadnilng nskqspngnl lpfvncrdpg qdsageeeee vqnpdcrksq eelkdsriyi
     2161 ssl
//
LOCUS       XP_053910878            2163 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent L-type calcium channel subunit alpha-1C isoform
            X17 [Cuculus canorus].
ACCESSION   XP_053910878
VERSION     XP_053910878.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054903.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2163
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2163
                     /product="voltage-dependent L-type calcium channel subunit
                     alpha-1C isoform X17"
                     /calculated_mol_wt=243530
     Region          150..444
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          551..792
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          929..1204
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1246..1515
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1524..1577
                     /region_name="GPHH"
                     /note="Voltage-dependent L-type calcium channel,
                     IQ-associated; pfam16905"
                     /db_xref="CDD:465306"
     Region          1587..1661
                     /region_name="Ca_chan_IQ"
                     /note="Voltage gated calcium channel IQ domain; pfam08763"
                     /db_xref="CDD:462591"
     Region          1681..2108
                     /region_name="CAC1F_C"
                     /note="Voltage-gated calcium channel subunit alpha,
                     C-term; pfam16885"
                     /db_xref="CDD:465298"
     CDS             1..2163
                     /gene="CACNA1C"
                     /coded_by="XM_054054903.1:788..7279"
                     /db_xref="GeneID:104055901"
ORIGIN      
        1 mfqalvrqay hplpshqpge petkykgklv hetqlncfyi kpggsnygsp rpahanmnan
       61 aaaglapehi ptpgaalswq aaidaarqak lmgsagnati stasstqrkr qqygkqkkqg
      121 tttatrppra llcltlknpi rracisivew kpfeiiillt ifancvalai yipfpeddsn
      181 atnsnlerve ylfliiftve aflkviaygl lfhpnaylrn gwnlldfiiv vvglfsaile
      241 qatkadggns iggkgagfdv kalrafrvlr plrlvsgvps lqvvlnsiik amvpllhial
      301 lvlfviiiya iiglelfmgk mhktcyhvqg glidtpaedd pspcapqsah grqcqngtec
      361 kagwegpkhg itnfdnfafa mltvfqcitm egwtdvlywm qdamgyelpw vyfvslvifg
      421 sffvlnlvlg vlsgefsker ekakargdfq klrekqqlee dlkgyldwit qaedidpene
      481 degmdeekpr nmsmptsete svntdnvpga diegencgar lahriskskf srywrrwnrf
      541 crrkcraavk snvfywlvif lvflntltia sehynqpdwl tevqdtankv llalftaeml
      601 lkmyslglqa yfvslfnrfd cfivcggile tilvetkims plgisvlrcv rllrifkitr
      661 ywnslsnlva sllnsvrsia slllllflfi iifsllgmql fggkfnfdem qtrrstfdnf
      721 pqslltvfqi ltgedwnsvm ydgimayggp sfpgmlvciy fiilficgny illnvflaia
      781 vdnladaesl tsaqkeeeee kerkklarta spekkqeiek taveeetkee kielksitad
      841 gesppatkin mddyqpnene ekspypptea paeedeeepe mpvgprprpm selhlkekav
      901 pmpdasaffi fspnnrfrvh chrivndnif tnlilffill ssislaaedp vrhlsfrnqi
      961 lfyfdivftv iftieialkm taygaflhkg sfcrnyfnil dllvvsvsli sfgiqssain
     1021 vvkilrvlrv lrplrainra kglkhvvqcv fvairtigni vivttllqfm facigvqlfk
     1081 gklysctdss kqtaaecrgy yitykdgevn qpmiqprswe nskfdfdnvl tammalftvs
     1141 tfegwpelly rsidshmedv gpiynhrvei siffiiyiii iaffmmnifv gfvivtfqeq
     1201 geqeykncel dknqrqcvey alkarplrry ipknqyqykv wyvvnstyfe ylmfvlilln
     1261 ticlamqhyg qscmfkeamn ilnmlftglf tvemvlklia fkpkgyfsdp wnvfdflivi
     1321 gsiidvilse tnpaehtqcs sfmnaeensr isitffrlfr vmrlvkllsr gegirtllwt
     1381 fiksfqalpy vallivmlff iyavigmqvf gkialndtte inrnnnfqtf pqavlllfrc
     1441 atgeawqeim laclpdkkcd pesepanste adhscgssfa vfyfisfyml cafliinlfv
     1501 avimdnfdyl trdwsilgph hldefkriwa eydpeakgri khldvvtllr riqpplgfgk
     1561 lcphrvackr lvsmnmplns dgtvmfnatl falvrtalri ktegnleqan eelraiikki
     1621 wkrtsmklld qvvppagdde vtvgkfyatf liqeyfrkfk krkeqglvgk psqrnalslq
     1681 aglrtlhdig peirraisgd ltaeeeldka mkeavsaase ddifrraggl fgnhvsyyqs
     1741 dgrsafpqtf ttqrplhink sgnnqgdtes psheklvdst ftpssysssg snaninnann
     1801 talccfpnpp sypstvstve ghaaplspti cvqeapwklp skssssrdsq laivcqeevs
     1861 qdetydenln edieycseps llstemlayq ddenrqltpp ennkgedarh spkkgflcss
     1921 algrrasfhl eclkrqknqg vdvsqktvlp lhlvhhqala vaglspllqr shspttfsrl
     1981 catppatpcs rgwpqqtipt lrldgaesse klnssfpsvh cssrypdnss cssprrarpv
     2041 sltvpsqtgg ssrqfhgsag slveavlise glmqfaqdpk fievttqela dacdmtieem
     2101 enaadnilng nskqspngnl lpfvncrdpg qdsageeeee vqnpdcrksq eelkdsriyi
     2161 ssl
//
LOCUS       XP_053910952            2163 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent L-type calcium channel subunit alpha-1C isoform
            X18 [Cuculus canorus].
ACCESSION   XP_053910952
VERSION     XP_053910952.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054977.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2163
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2163
                     /product="voltage-dependent L-type calcium channel subunit
                     alpha-1C isoform X18"
                     /calculated_mol_wt=243394
     Region          150..444
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          551..792
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          929..1204
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1246..1515
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1524..1577
                     /region_name="GPHH"
                     /note="Voltage-dependent L-type calcium channel,
                     IQ-associated; pfam16905"
                     /db_xref="CDD:465306"
     Region          1587..1661
                     /region_name="Ca_chan_IQ"
                     /note="Voltage gated calcium channel IQ domain; pfam08763"
                     /db_xref="CDD:462591"
     Region          1681..2108
                     /region_name="CAC1F_C"
                     /note="Voltage-gated calcium channel subunit alpha,
                     C-term; pfam16885"
                     /db_xref="CDD:465298"
     CDS             1..2163
                     /gene="CACNA1C"
                     /coded_by="XM_054054977.1:787..7278"
                     /db_xref="GeneID:104055901"
ORIGIN      
        1 mfqalvrqay hplpshqpge petkykgklv hetqlncfyi kpggsnygsp rpahanmnan
       61 aaaglapehi ptpgaalswq aaidaarqak lmgsagnati stasstqrkr qqygkqkkqg
      121 tttatrppra llcltlknpi rracisivew kpfeiiillt ifancvalai yipfpeddsn
      181 atnsnlerve ylfliiftve aflkviaygl lfhpnaylrn gwnlldfiiv vvglfsaile
      241 qatkadggns iggkgagfdv kalrafrvlr plrlvsgvps lqvvlnsiik amvpllhial
      301 lvlfviiiya iiglelfmgk mhktcyhvqg glidtpaedd pspcapqsah grqcqngtec
      361 kagwegpkhg itnfdnfafa mltvfqcitm egwtdvlywm qdamgyelpw vyfvslvifg
      421 sffvlnlvlg vlsgefsker ekakargdfq klrekqqlee dlkgyldwit qaedidpene
      481 degmdeekpr nmsmptsete svntdnvpga diegencgar lahriskskf srywrrwnrf
      541 crrkcraavk snvfywlvif lvflntltia sehynqpdwl tevqdtankv llalftaeml
      601 lkmyslglqa yfvslfnrfd cfivcggile tilvetkims plgisvlrcv rllrifkitr
      661 ywnslsnlva sllnsvrsia slllllflfi iifsllgmql fggkfnfdem qtrrstfdnf
      721 pqslltvfqi ltgedwnsvm ydgimayggp sfpgmlvciy fiilficgny illnvflaia
      781 vdnladaesl tsaqkeeeee kerkklarta spekkqeiek taveeetkee kielksitad
      841 gesppatkin mddyqpnene ekspypptea paeedeeepe mpvgprprpm selhlkekav
      901 pmpdasaffi fspnnrfrvh chrivndnif tnlilffill ssislaaedp vrhlsfrnqi
      961 lgnadyvfts iftleiilkm taygaflhkg sfcrnyfnil dllvvsvsli sfgiqssain
     1021 vvkilrvlrv lrplrainra kglkhvvqcv fvairtigni vivttllqfm facigvqlfk
     1081 gklysctdss kqtaaecrgy yitykdgevn qpmiqprswe nskfdfdnvl tammalftvs
     1141 tfegwpelly rsidshmedv gpiynhrvei siffiiyiii iaffmmnifv gfvivtfqeq
     1201 geqeykncel dknqrqcvey alkarplrry ipknqyqykv wyvvnstyfe ylmfvlilln
     1261 ticlamqhyg qscmfkeamn ilnmlftglf tvemvlklia fkpkgyfsdp wnvfdflivi
     1321 gsiidvilse tnpaehtqcs sfmnaeensr isitffrlfr vmrlvkllsr gegirtllwt
     1381 fiksfqalpy vallivmlff iyavigmqvf gkialndtte inrnnnfqtf pqavlllfrc
     1441 atgeawqeim laclpdkkcd pesepanste adhscgssfa vfyfisfyml cafliinlfv
     1501 avimdnfdyl trdwsilgph hldefkriwa eydpeakgri khldvvtllr riqpplgfgk
     1561 lcphrvackr lvsmnmplns dgtvmfnatl falvrtalri ktegnleqan eelraiikki
     1621 wkrtsmklld qvvppagdde vtvgkfyatf liqeyfrkfk krkeqglvgk psqrnalslq
     1681 aglrtlhdig peirraisgd ltaeeeldka mkeavsaase ddifrraggl fgnhvsyyqs
     1741 dgrsafpqtf ttqrplhink sgnnqgdtes psheklvdst ftpssysssg snaninnann
     1801 talccfpnpp sypstvstve ghaaplspti cvqeapwklp skssssrdsq laivcqeevs
     1861 qdetydenln edieycseps llstemlayq ddenrqltpp ennkgedarh spkkgflcss
     1921 algrrasfhl eclkrqknqg vdvsqktvlp lhlvhhqala vaglspllqr shspttfsrl
     1981 catppatpcs rgwpqqtipt lrldgaesse klnssfpsvh cssrypdnss cssprrarpv
     2041 sltvpsqtgg ssrqfhgsag slveavlise glmqfaqdpk fievttqela dacdmtieem
     2101 enaadnilng nskqspngnl lpfvncrdpg qdsageeeee vqnpdcrksq eelkdsriyi
     2161 ssl
//
LOCUS       XP_053911030            2161 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent L-type calcium channel subunit alpha-1C isoform
            X19 [Cuculus canorus].
ACCESSION   XP_053911030
VERSION     XP_053911030.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055055.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2161
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2161
                     /product="voltage-dependent L-type calcium channel subunit
                     alpha-1C isoform X19"
                     /calculated_mol_wt=243399
     Region          150..444
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          551..792
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          929..1204
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1246..1504
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1513..1566
                     /region_name="GPHH"
                     /note="Voltage-dependent L-type calcium channel,
                     IQ-associated; pfam16905"
                     /db_xref="CDD:465306"
     Region          1576..1650
                     /region_name="Ca_chan_IQ"
                     /note="Voltage gated calcium channel IQ domain; pfam08763"
                     /db_xref="CDD:462591"
     Region          1670..2106
                     /region_name="CAC1F_C"
                     /note="Voltage-gated calcium channel subunit alpha,
                     C-term; pfam16885"
                     /db_xref="CDD:465298"
     CDS             1..2161
                     /gene="CACNA1C"
                     /coded_by="XM_054055055.1:787..7272"
                     /db_xref="GeneID:104055901"
ORIGIN      
        1 mfqalvrqay hplpshqpge petkykgklv hetqlncfyi kpggsnygsp rpahanmnan
       61 aaaglapehi ptpgaalswq aaidaarqak lmgsagnati stasstqrkr qqygkqkkqg
      121 tttatrppra llcltlknpi rracisivew kpfeiiillt ifancvalai yipfpeddsn
      181 atnsnlerve ylfliiftve aflkviaygl lfhpnaylrn gwnlldfiiv vvglfsaile
      241 qatkadggns iggkgagfdv kalrafrvlr plrlvsgvps lqvvlnsiik amvpllhial
      301 lvlfviiiya iiglelfmgk mhktcyhvqg glidtpaedd pspcapqsah grqcqngtec
      361 kagwegpkhg itnfdnfafa mltvfqcitm egwtdvlywm qdamgyelpw vyfvslvifg
      421 sffvlnlvlg vlsgefsker ekakargdfq klrekqqlee dlkgyldwit qaedidpene
      481 degmdeekpr nmsmptsete svntdnvpga diegencgar lahriskskf srywrrwnrf
      541 crrkcraavk snvfywlvif lvflntltia sehynqpdwl tevqdtankv llalftaeml
      601 lkmyslglqa yfvslfnrfd cfivcggile tilvetkims plgisvlrcv rllrifkitr
      661 ywnslsnlva sllnsvrsia slllllflfi iifsllgmql fggkfnfdem qtrrstfdnf
      721 pqslltvfqi ltgedwnsvm ydgimayggp sfpgmlvciy fiilficgny illnvflaia
      781 vdnladaesl tsaqkeeeee kerkklarta spekkqeiek taveeetkee kielksitad
      841 gesppatkin mddyqpnene ekspypptea paeedeeepe mpvgprprpm selhlkekav
      901 pmpdasaffi fspnnrfrvh chrivndnif tnlilffill ssislaaedp vrhlsfrnqi
      961 lfyfdivftv iftieialkm taygaflhkg sfcrnyfnil dllvvsvsli sfgiqssain
     1021 vvkilrvlrv lrplrainra kglkhvvqcv fvairtigni vivttllqfm facigvqlfk
     1081 gklysctdss kqtaaecrgy yitykdgevn qpmiqprswe nskfdfdnvl tammalftvs
     1141 tfegwpelly rsidshmedv gpiynhrvei siffiiyiii iaffmmnifv gfvivtfqeq
     1201 geqeykncel dknqrqcvey alkarplrry ipknqyqykv wyvvnstyfe ylmfvlilln
     1261 ticlamqhyg qscmfkeamn ilnmlftglf tvemvlklia fkpkhyfcda wntfdalivv
     1321 gsivdiaite vnnaeensri sitffrlfrv mrlvkllsrg egirtllwtf iksfqalpyv
     1381 allivmlffi yavigmqvfg kialndttei nrnnnfqtfp qavlllfrca tgeawqeiml
     1441 aclpdkkcdp esepanstea dhscgssfav fyfisfymlc afliinlfva vimdnfdylt
     1501 rdwsilgphh ldefkriwae ydpeakgrik hldvvtllrr iqpplgfgkl cphrvackrl
     1561 vsmnmplnsd gtvmfnatlf alvrtalrik tegnleqane elraiikkiw krtsmklldq
     1621 vvppagddev tvgkfyatfl iqeyfrkfkk rkeqglvgkp sqrnalslqa glrtlhdigp
     1681 eirraisgdl taeeeldkam keavsaased difrragglf gnhvsyyqsd grsafpqtft
     1741 tqrplhinks gnnqgdtesp sheklvdstf tpssysssgs naninnannt alccfpnpps
     1801 ypstvstveg haaplsptic vqeapwklps krthyyetlg csssrdsqla ivcqeevsqd
     1861 etydenlned ieycsepsll stemlayqdd enrqltppen nkgedarhsp kkgflcssal
     1921 grrasfhlec lkrqknqgvd vsqktvlplh lvhhqalava glspllqrsh spttfsrlca
     1981 tppatpcsrg wpqqtiptlr ldgaessekl nssfpsvhcs srypdnsscs sprrarpvsl
     2041 tvpsqtggss rqfhgsagsl veavlisegl mqfaqdpkfi evttqelada cdmtieemen
     2101 aadnilngns kqspngnllp fvncrdpgqd sageeeeevq npdcrksqee lkdsriyiss
     2161 l
//
LOCUS       XP_053911114            2161 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent L-type calcium channel subunit alpha-1C isoform
            X20 [Cuculus canorus].
ACCESSION   XP_053911114
VERSION     XP_053911114.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055139.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2161
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2161
                     /product="voltage-dependent L-type calcium channel subunit
                     alpha-1C isoform X20"
                     /calculated_mol_wt=243374
     Region          150..444
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          551..792
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          929..1204
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1246..1543
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1552..1605
                     /region_name="GPHH"
                     /note="Voltage-dependent L-type calcium channel,
                     IQ-associated; pfam16905"
                     /db_xref="CDD:465306"
     Region          1615..1689
                     /region_name="Ca_chan_IQ"
                     /note="Voltage gated calcium channel IQ domain; pfam08763"
                     /db_xref="CDD:462591"
     Region          1714..2150
                     /region_name="CAC1F_C"
                     /note="Voltage-gated calcium channel subunit alpha,
                     C-term; pfam16885"
                     /db_xref="CDD:465298"
     CDS             1..2161
                     /gene="CACNA1C"
                     /coded_by="XM_054055139.1:789..7274"
                     /db_xref="GeneID:104055901"
ORIGIN      
        1 mfqalvrqay hplpshqpge petkykgklv hetqlncfyi kpggsnygsp rpahanmnan
       61 aaaglapehi ptpgaalswq aaidaarqak lmgsagnati stasstqrkr qqygkqkkqg
      121 tttatrppra llcltlknpi rracisivew kpfeiiillt ifancvalai yipfpeddsn
      181 atnsnlerve ylfliiftve aflkviaygl lfhpnaylrn gwnlldfiiv vvglfsaile
      241 qatkadggns iggkgagfdv kalrafrvlr plrlvsgvps lqvvlnsiik amvpllhial
      301 lvlfviiiya iiglelfmgk mhktcyhvqg glidtpaedd pspcapqsah grqcqngtec
      361 kagwegpkhg itnfdnfafa mltvfqcitm egwtdvlywm qdamgyelpw vyfvslvifg
      421 sffvlnlvlg vlsgefsker ekakargdfq klrekqqlee dlkgyldwit qaedidpene
      481 degmdeekpr nmsmptsete svntdnvpga diegencgar lahriskskf srywrrwnrf
      541 crrkcraavk snvfywlvif lvflntltia sehynqpdwl tevqdtankv llalftaeml
      601 lkmyslglqa yfvslfnrfd cfivcggile tilvetkims plgisvlrcv rllrifkitr
      661 ywnslsnlva sllnsvrsia slllllflfi iifsllgmql fggkfnfdem qtrrstfdnf
      721 pqslltvfqi ltgedwnsvm ydgimayggp sfpgmlvciy fiilficgny illnvflaia
      781 vdnladaesl tsaqkeeeee kerkklarta spekkqeiek taveeetkee kielksitad
      841 gesppatkin mddyqpnene ekspypptea paeedeeepe mpvgprprpm selhlkekav
      901 pmpdasaffi fspnnrfrvh chrivndnif tnlilffill ssislaaedp vrhlsfrnqi
      961 lgnadyvfts iftleiilkm taygaflhkg sfcrnyfnil dllvvsvsli sfgiqssain
     1021 vvkilrvlrv lrplrainra kglkhvvqcv fvairtigni vivttllqfm facigvqlfk
     1081 gklysctdss kqtaaecrgy yitykdgevn qpmiqprswe nskfdfdnvl tammalftvs
     1141 tfegwpelly rsidshmedv gpiynhrvei siffiiyiii iaffmmnifv gfvivtfqeq
     1201 geqeykncel dknqrqcvey alkarplrry ipknqyqykv wyvvnstyfe ylmfvlilln
     1261 ticlamqhyg qscmfkeamn ilnmlftglf tvemvlklia fkpkgyfsdp wnvfdflivi
     1321 gsiidvilse tnhyfcdawn tfdalivvgs ivdiaitevn paehtqcssf mnaeensris
     1381 itffrlfrvm rlvkllsrge girtllwtfi ksfqalpyva llivmlffiy avigmqvfgk
     1441 ialndttein rnnnfqtfpq avlllfrcat geawqeimla clpdkkcdpe sepanstead
     1501 hscgssfavf yfisfymlca fliinlfvav imdnfdyltr dwsilgphhl defkriwaey
     1561 dpeakgrikh ldvvtllrri qpplgfgklc phrvackrlv smnmplnsdg tvmfnatlfa
     1621 lvrtalrikt egnleqanee lraiikkiwk rtsmklldqv vppagddevt vgkfyatfli
     1681 qeyfrkfkkr keqglvgkps qrnalslqfa vlqaglrtlh digpeirrai sgdltaeeel
     1741 dkamkeavsa aseddifrra gglfgnhvsy yqsdgrsafp qtfttqrplh inksgnnqgd
     1801 tespsheklv dstftpssys ssgsnaninn anntalccfp nppsypstvs tveghaapls
     1861 pticvqeapw klpskrthyy etlgcsssrd sqlaivcqee vsqdetyden lnedieycse
     1921 psllstemla yqddenrqlt ppennkgeda rhspkkgflc ssalgrrasf hleclkrqkn
     1981 qgvdvsqktv lplhlvhhqa lavaglspll qrshspttfs rlcatppatp csrgwpqqti
     2041 ptlrldgaes seklnssfps vhcssrypdn sscssprrar pvsltvpsqt ggssrqfhgs
     2101 agslveavli seglmqfaqd pkfievttqe ladacdmtie emenaadnil nevphcsrdl
     2161 e
//
LOCUS       XP_053911195            2153 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent L-type calcium channel subunit alpha-1C isoform
            X21 [Cuculus canorus].
ACCESSION   XP_053911195
VERSION     XP_053911195.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055220.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2153
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2153
                     /product="voltage-dependent L-type calcium channel subunit
                     alpha-1C isoform X21"
                     /calculated_mol_wt=242260
     Region          150..444
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          551..792
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          929..1204
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1246..1543
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1552..1605
                     /region_name="GPHH"
                     /note="Voltage-dependent L-type calcium channel,
                     IQ-associated; pfam16905"
                     /db_xref="CDD:465306"
     Region          1615..1689
                     /region_name="Ca_chan_IQ"
                     /note="Voltage gated calcium channel IQ domain; pfam08763"
                     /db_xref="CDD:462591"
     Region          1714..2098
                     /region_name="CAC1F_C"
                     /note="Voltage-gated calcium channel subunit alpha,
                     C-term; pfam16885"
                     /db_xref="CDD:465298"
     CDS             1..2153
                     /gene="CACNA1C"
                     /coded_by="XM_054055220.1:789..7250"
                     /db_xref="GeneID:104055901"
ORIGIN      
        1 mfqalvrqay hplpshqpge petkykgklv hetqlncfyi kpggsnygsp rpahanmnan
       61 aaaglapehi ptpgaalswq aaidaarqak lmgsagnati stasstqrkr qqygkqkkqg
      121 tttatrppra llcltlknpi rracisivew kpfeiiillt ifancvalai yipfpeddsn
      181 atnsnlerve ylfliiftve aflkviaygl lfhpnaylrn gwnlldfiiv vvglfsaile
      241 qatkadggns iggkgagfdv kalrafrvlr plrlvsgvps lqvvlnsiik amvpllhial
      301 lvlfviiiya iiglelfmgk mhktcyhvqg glidtpaedd pspcapqsah grqcqngtec
      361 kagwegpkhg itnfdnfafa mltvfqcitm egwtdvlywm qdamgyelpw vyfvslvifg
      421 sffvlnlvlg vlsgefsker ekakargdfq klrekqqlee dlkgyldwit qaedidpene
      481 degmdeekpr nmsmptsete svntdnvpga diegencgar lahriskskf srywrrwnrf
      541 crrkcraavk snvfywlvif lvflntltia sehynqpdwl tevqdtankv llalftaeml
      601 lkmyslglqa yfvslfnrfd cfivcggile tilvetkims plgisvlrcv rllrifkitr
      661 ywnslsnlva sllnsvrsia slllllflfi iifsllgmql fggkfnfdem qtrrstfdnf
      721 pqslltvfqi ltgedwnsvm ydgimayggp sfpgmlvciy fiilficgny illnvflaia
      781 vdnladaesl tsaqkeeeee kerkklarta spekkqeiek taveeetkee kielksitad
      841 gesppatkin mddyqpnene ekspypptea paeedeeepe mpvgprprpm selhlkekav
      901 pmpdasaffi fspnnrfrvh chrivndnif tnlilffill ssislaaedp vrhlsfrnqi
      961 lgnadyvfts iftleiilkm taygaflhkg sfcrnyfnil dllvvsvsli sfgiqssain
     1021 vvkilrvlrv lrplrainra kglkhvvqcv fvairtigni vivttllqfm facigvqlfk
     1081 gklysctdss kqtaaecrgy yitykdgevn qpmiqprswe nskfdfdnvl tammalftvs
     1141 tfegwpelly rsidshmedv gpiynhrvei siffiiyiii iaffmmnifv gfvivtfqeq
     1201 geqeykncel dknqrqcvey alkarplrry ipknqyqykv wyvvnstyfe ylmfvlilln
     1261 ticlamqhyg qscmfkeamn ilnmlftglf tvemvlklia fkpkgyfsdp wnvfdflivi
     1321 gsiidvilse tnhyfcdawn tfdalivvgs ivdiaitevn paehtqcssf mnaeensris
     1381 itffrlfrvm rlvkllsrge girtllwtfi ksfqalpyva llivmlffiy avigmqvfgk
     1441 ialndttein rnnnfqtfpq avlllfrcat geawqeimla clpdkkcdpe sepanstead
     1501 hscgssfavf yfisfymlca fliinlfvav imdnfdyltr dwsilgphhl defkriwaey
     1561 dpeakgrikh ldvvtllrri qpplgfgklc phrvackrlv smnmplnsdg tvmfnatlfa
     1621 lvrtalrikt egnleqanee lraiikkiwk rtsmklldqv vppagddevt vgkfyatfli
     1681 qeyfrkfkkr keqglvgkps qrnalslqfa vlqaglrtlh digpeirrai sgdltaeeel
     1741 dkamkeavsa aseddifrra gglfgnhvsy yqsdgrsafp qtfttqrplh inksgnnqgd
     1801 tespsheklv dstftpssys ssgsnaninn anntalccfp nppsypstvs tveghaapls
     1861 pticvqeapw klpskrlayq ddenrqltpp ennkgedarh spkkgflcss algrrasfhl
     1921 eclkrqknqg vdvsqktvlp lhlvhhqala vaglspllqr shspttfsrl catppatpcs
     1981 rgwpqqtipt lrldgaesse klnssfpsvh cssrypdnss cssprrarpv sltvpsqtgg
     2041 ssrqfhgsag slveavlise glmqfaqdpk fievttqela dacdmtieem enaadnilng
     2101 nskqspngnl lpfvncrdpg qdsageeeee vqnpdcrksq eelkdsriyi ssl
//
LOCUS       XP_053911279            2152 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent L-type calcium channel subunit alpha-1C isoform
            X22 [Cuculus canorus].
ACCESSION   XP_053911279
VERSION     XP_053911279.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055304.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2152
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2152
                     /product="voltage-dependent L-type calcium channel subunit
                     alpha-1C isoform X22"
                     /calculated_mol_wt=242123
     Region          150..444
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          551..792
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          929..1204
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1246..1504
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1513..1566
                     /region_name="GPHH"
                     /note="Voltage-dependent L-type calcium channel,
                     IQ-associated; pfam16905"
                     /db_xref="CDD:465306"
     Region          1576..1650
                     /region_name="Ca_chan_IQ"
                     /note="Voltage gated calcium channel IQ domain; pfam08763"
                     /db_xref="CDD:462591"
     Region          1670..2097
                     /region_name="CAC1F_C"
                     /note="Voltage-gated calcium channel subunit alpha,
                     C-term; pfam16885"
                     /db_xref="CDD:465298"
     CDS             1..2152
                     /gene="CACNA1C"
                     /coded_by="XM_054055304.1:787..7245"
                     /db_xref="GeneID:104055901"
ORIGIN      
        1 mfqalvrqay hplpshqpge petkykgklv hetqlncfyi kpggsnygsp rpahanmnan
       61 aaaglapehi ptpgaalswq aaidaarqak lmgsagnati stasstqrkr qqygkqkkqg
      121 tttatrppra llcltlknpi rracisivew kpfeiiillt ifancvalai yipfpeddsn
      181 atnsnlerve ylfliiftve aflkviaygl lfhpnaylrn gwnlldfiiv vvglfsaile
      241 qatkadggns iggkgagfdv kalrafrvlr plrlvsgvps lqvvlnsiik amvpllhial
      301 lvlfviiiya iiglelfmgk mhktcyhvqg glidtpaedd pspcapqsah grqcqngtec
      361 kagwegpkhg itnfdnfafa mltvfqcitm egwtdvlywv ndaigrdwpw iyfvtliiig
      421 sffvlnlvlg vlsgefsker ekakargdfq klrekqqlee dlkgyldwit qaedidpene
      481 degmdeekpr nmsmptsete svntdnvpga diegencgar lahriskskf srywrrwnrf
      541 crrkcraavk snvfywlvif lvflntltia sehynqpdwl tevqdtankv llalftaeml
      601 lkmyslglqa yfvslfnrfd cfivcggile tilvetkims plgisvlrcv rllrifkitr
      661 ywnslsnlva sllnsvrsia slllllflfi iifsllgmql fggkfnfdem qtrrstfdnf
      721 pqslltvfqi ltgedwnsvm ydgimayggp sfpgmlvciy fiilficgny illnvflaia
      781 vdnladaesl tsaqkeeeee kerkklarta spekkqeiek taveeetkee kielksitad
      841 gesppatkin mddyqpnene ekspypptea paeedeeepe mpvgprprpm selhlkekav
      901 pmpdasaffi fspnnrfrvh chrivndnif tnlilffill ssislaaedp vrhlsfrnqi
      961 lgnadyvfts iftleiilkm taygaflhkg sfcrnyfnil dllvvsvsli sfgiqssain
     1021 vvkilrvlrv lrplrainra kglkhvvqcv fvairtigni vivttllqfm facigvqlfk
     1081 gklysctdss kqtaaecrgy yitykdgevn qpmiqprswe nskfdfdnvl tammalftvs
     1141 tfegwpelly rsidshmedv gpiynhrvei siffiiyiii iaffmmnifv gfvivtfqeq
     1201 geqeykncel dknqrqcvey alkarplrry ipknqyqykv wyvvnstyfe ylmfvlilln
     1261 ticlamqhyg qscmfkeamn ilnmlftglf tvemvlklia fkpkhyfcda wntfdalivv
     1321 gsivdiaite vnnaeensri sitffrlfrv mrlvkllsrg egirtllwtf iksfqalpyv
     1381 allivmlffi yavigmqvfg kialndttei nrnnnfqtfp qavlllfrca tgeawqeiml
     1441 aclpdkkcdp esepanstea dhscgssfav fyfisfymlc afliinlfva vimdnfdylt
     1501 rdwsilgphh ldefkriwae ydpeakgrik hldvvtllrr iqpplgfgkl cphrvackrl
     1561 vsmnmplnsd gtvmfnatlf alvrtalrik tegnleqane elraiikkiw krtsmklldq
     1621 vvppagddev tvgkfyatfl iqeyfrkfkk rkeqglvgkp sqrnalslqa glrtlhdigp
     1681 eirraisgdl taeeeldkam keavsaased difrragglf gnhvsyyqsd grsafpqtft
     1741 tqrplhinks gnnqgdtesp sheklvdstf tpssysssgs naninnannt alccfpnpps
     1801 ypstvstveg haaplsptic vqeapwklps kssssrdsql aivcqeevsq detydenlne
     1861 dieycsepsl lstemlayqd denrqltppe nnkgedarhs pkkgflcssa lgrrasfhle
     1921 clkrqknqgv dvsqktvlpl hlvhhqalav aglspllqrs hspttfsrlc atppatpcsr
     1981 gwpqqtiptl rldgaessek lnssfpsvhc ssrypdnssc ssprrarpvs ltvpsqtggs
     2041 srqfhgsags lveavliseg lmqfaqdpkf ievttqelad acdmtieeme naadnilngn
     2101 skqspngnll pfvncrdpgq dsageeeeev qnpdcrksqe elkdsriyis sl
//
LOCUS       XP_053911352            2149 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent L-type calcium channel subunit alpha-1C isoform
            X23 [Cuculus canorus].
ACCESSION   XP_053911352
VERSION     XP_053911352.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055377.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2149
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2149
                     /product="voltage-dependent L-type calcium channel subunit
                     alpha-1C isoform X23"
                     /calculated_mol_wt=241934
     Region          150..444
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          551..792
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          929..1204
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1246..1487
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1496..1549
                     /region_name="GPHH"
                     /note="Voltage-dependent L-type calcium channel,
                     IQ-associated; pfam16905"
                     /db_xref="CDD:465306"
     Region          1559..1633
                     /region_name="Ca_chan_IQ"
                     /note="Voltage gated calcium channel IQ domain; pfam08763"
                     /db_xref="CDD:462591"
     Region          1658..2094
                     /region_name="CAC1F_C"
                     /note="Voltage-gated calcium channel subunit alpha,
                     C-term; pfam16885"
                     /db_xref="CDD:465298"
     CDS             1..2149
                     /gene="CACNA1C"
                     /coded_by="XM_054055377.1:787..7236"
                     /db_xref="GeneID:104055901"
ORIGIN      
        1 mfqalvrqay hplpshqpge petkykgklv hetqlncfyi kpggsnygsp rpahanmnan
       61 aaaglapehi ptpgaalswq aaidaarqak lmgsagnati stasstqrkr qqygkqkkqg
      121 tttatrppra llcltlknpi rracisivew kpfeiiillt ifancvalai yipfpeddsn
      181 atnsnlerve ylfliiftve aflkviaygl lfhpnaylrn gwnlldfiiv vvglfsaile
      241 qatkadggns iggkgagfdv kalrafrvlr plrlvsgvps lqvvlnsiik amvpllhial
      301 lvlfviiiya iiglelfmgk mhktcyhvqg glidtpaedd pspcapqsah grqcqngtec
      361 kagwegpkhg itnfdnfafa mltvfqcitm egwtdvlywm qdamgyelpw vyfvslvifg
      421 sffvlnlvlg vlsgefsker ekakargdfq klrekqqlee dlkgyldwit qaedidpene
      481 degmdeekpr nmsmptsete svntdnvpga diegencgar lahriskskf srywrrwnrf
      541 crrkcraavk snvfywlvif lvflntltia sehynqpdwl tevqdtankv llalftaeml
      601 lkmyslglqa yfvslfnrfd cfivcggile tilvetkims plgisvlrcv rllrifkitr
      661 ywnslsnlva sllnsvrsia slllllflfi iifsllgmql fggkfnfdem qtrrstfdnf
      721 pqslltvfqi ltgedwnsvm ydgimayggp sfpgmlvciy fiilficgny illnvflaia
      781 vdnladaesl tsaqkeeeee kerkklarta spekkqeiek taveeetkee kielksitad
      841 gesppatkin mddyqpnene ekspypptea paeedeeepe mpvgprprpm selhlkekav
      901 pmpdasaffi fspnnrfrvh chrivndnif tnlilffill ssislaaedp vrhlsfrnqi
      961 lgnadyvfts iftleiilkm taygaflhkg sfcrnyfnil dllvvsvsli sfgiqssain
     1021 vvkilrvlrv lrplrainra kglkhvvqcv fvairtigni vivttllqfm facigvqlfk
     1081 gklysctdss kqtaaecrgy yitykdgevn qpmiqprswe nskfdfdnvl tammalftvs
     1141 tfegwpelly rsidshmedv gpiynhrvei siffiiyiii iaffmmnifv gfvivtfqeq
     1201 geqeykncel dknqrqcvey alkarplrry ipknqyqykv wyvvnstyfe ylmfvlilln
     1261 ticlamqhyg qscmfkeamn ilnmlftglf tvemvlklia fkpkpaehtq cssfmnaeen
     1321 srisitffrl frvmrlvkll srgegirtll wtfiksfqal pyvallivml ffiyavigmq
     1381 vfgkialndt teinrnnnfq tfpqavlllf rcatgeawqe imlaclpdkk cdpesepans
     1441 teadhscgss favfyfisfy mlcafliinl fvavimdnfd yltrdwsilg phhldefkri
     1501 waeydpeakg rikhldvvtl lrriqpplgf gklcphrvac krlvsmnmpl nsdgtvmfna
     1561 tlfalvrtal riktegnleq aneelraiik kiwkrtsmkl ldqvvppagd devtvgkfya
     1621 tfliqeyfrk fkkrkeqglv gkpsqrnals lqfavlqagl rtlhdigpei rraisgdlta
     1681 eeeldkamke avsaaseddi frragglfgn hvsyyqsdgr safpqtfttq rplhinksgn
     1741 nqgdtespsh eklvdstftp ssysssgsna ninnanntal ccfpnppsyp stvstvegha
     1801 aplspticvq eapwklpskr thyyetlgcs ssrdsqlaiv cqeevsqdet ydenlnedie
     1861 ycsepsllst emlayqdden rqltppennk gedarhspkk gflcssalgr rasfhleclk
     1921 rqknqgvdvs qktvlplhlv hhqalavagl spllqrshsp ttfsrlcatp patpcsrgwp
     1981 qqtiptlrld gaesseklns sfpsvhcssr ypdnsscssp rrarpvsltv psqtggssrq
     2041 fhgsagslve avliseglmq faqdpkfiev ttqeladacd mtieemenaa dnilngnskq
     2101 spngnllpfv ncrdpgqdsa geeeeevqnp dcrksqeelk dsriyissl
//
LOCUS       XP_053911441            1486 aa            linear   VRT 09-MAR-2023
DEFINITION  chromatin remodeling regulator CECR2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911441
VERSION     XP_053911441.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055466.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1486
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1486
                     /product="chromatin remodeling regulator CECR2 isoform X1"
                     /calculated_mol_wt=163015
     Region          442..542
                     /region_name="Bromo_gcn5_like"
                     /note="Bromodomain; Gcn5_like subfamily. Gcn5p is a
                     histone acetyltransferase (HAT) which mediates acetylation
                     of histones at lysine residues; such acetylation is
                     generally correlated with the activation of transcription.
                     Bromodomains are 110 amino acid long...; cd05509"
                     /db_xref="CDD:99941"
     Site            order(467,472,475,514,518,524)
                     /site_type="active"
                     /note="acetyllysine binding site [active]"
                     /db_xref="CDD:99941"
     Region          <566..1023
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..1486
                     /gene="LOC104055897"
                     /coded_by="XM_054055466.1:260..4720"
                     /db_xref="GeneID:104055897"
ORIGIN      
        1 mcpeedggcg gggggggggg gggvagtggp easvaldelr swwevpaiah fcslfrtafr
       61 lpdfeieele aalhrddvef isdliacllq gcyqrrdits qtfhsyledi inyrweleeg
      121 kpnplrestf qelplrtrve ilhrlcdyrl daddvfdllk gldadslrve plgedssgal
      181 ywyfygtrmy kedpvqgktn gelapdrgcg gqtntpnvpg ktgkrrgrpp krkklleenl
      241 lrekaeenll iretqirngs qgpgrgtwwl lcqteeewrq vtesfrerts lrerqlykll
      301 sedflpeicn miaqkekrlq rtefsprwms drqpikpikq evnpsvlnsm ekqrrreeee
      361 erqiliavqk reqeqllkee rkremeekvk aveerarrrk lreerawlla qgkelppels
      421 hldpssptke errtkdlfel ddeftamykv ldvvkahkds wpflepvdes yapnyyqiik
      481 apmdissmek klnggqyctk eefvgdmktm frnclkynge gseytkmayn lercfhramm
      541 khfpgedgdt deefwiredg rrekrsrrtg rssagsvwtr srdpdgpgkr qqrlenggkp
      601 ppyratprap asssssssfs sssaedpsgn pmqssqevgp sngrgfphsl qygsmpspvp
      661 hpsqmrpavp gtfgplrgsd ptklygsprv pephpgdlvq qhqhfamqpa vglsehrghr
      721 laapekqaca gpthvsglgp rpgalqlgrm sgpppdavyp pgqfqqgflp prhngpplrq
      781 pessevppgh myrpykylnr ahpalwngsh gpagqgtmgp eekapmgpgp slqpramghm
      841 mdpramrppl ppsqwteqsn flphgvppsg yirppgkatg qrmpqppgtl fggppqvqrg
      901 cqggdsmmds pemiamqqls srvcppgvpy hprqpppphl pgpfpqlaha asaaqapkpi
      961 mgngnsqdpt gqtmdpesnq veppagvdek aqcigipdga ytkllphpkp plpmectrra
     1021 lppdgegdgs svkgdmkagq skgawpvesg ytggpgcmrd lvptserggp lpengaaseg
     1081 ptasaegkgl aanllekplc sggkalpeaa vpcvgqgtgl ptmdassvga apnqfhplym
     1141 pgleypnsag ryhinpslqg fgpvmggkpp ppashpqhfp prgfqpnsah pgvfpryrpp
     1201 qgmpypyqpq pqpsyhhyqr payyacpqgy sdwqrplhpq aspsghptth pplarppfpd
     1261 rgsasglqgc evlstalasp srmdvasake vspsdgqdlg peeekseesq erpespkefl
     1321 dldnhnaatk rqssvaagef lygappphlg sgmgfsppaf pphgvmlqtg spyasrhpts
     1381 hfqprtygsp mnahlshhpa sgqanglsqe gplyrcreen vghfqallme qrgsgggmgg
     1441 ppqdlyrpsg vqmhqaqvpf pkmptatmsr edltpqkpsa lpldqs
//
LOCUS       XP_053911500            1460 aa            linear   VRT 09-MAR-2023
DEFINITION  chromatin remodeling regulator CECR2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053911500
VERSION     XP_053911500.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055525.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1460
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1460
                     /product="chromatin remodeling regulator CECR2 isoform X2"
                     /calculated_mol_wt=159748
     Region          416..516
                     /region_name="Bromo_gcn5_like"
                     /note="Bromodomain; Gcn5_like subfamily. Gcn5p is a
                     histone acetyltransferase (HAT) which mediates acetylation
                     of histones at lysine residues; such acetylation is
                     generally correlated with the activation of transcription.
                     Bromodomains are 110 amino acid long...; cd05509"
                     /db_xref="CDD:99941"
     Site            order(441,446,449,488,492,498)
                     /site_type="active"
                     /note="acetyllysine binding site [active]"
                     /db_xref="CDD:99941"
     Region          <540..997
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..1460
                     /gene="LOC104055897"
                     /coded_by="XM_054055525.1:260..4642"
                     /db_xref="GeneID:104055897"
ORIGIN      
        1 mcpeedggcg gggggggggg gggvagtggp easvaldelr swwevpaiah fcslfrtafr
       61 lpdfeieele aalhrddvef isdliacllq gcyqrrdits qtfhsyledi inyrweleeg
      121 kpnplrestf qelplrtrve ilhrlcdyrl daddvfdllk gldadslrve plgedssgal
      181 ywyfygtrmy kedpvqgktn gelapdrgcg gqtntpnvpg ktgkrrgrpp krkklleenl
      241 lrekaeenll iretqirngs qgpgrgtwwl lcqteeewrq vtesfrerts lrerqlykll
      301 sedflpeicn miaqkvnpsv lnsmekqrrr eeeeerqili avqkreqeql lkeerkreme
      361 ekvkaveera rrrklreera wllaqgkelp pelshldpss ptkeerrtkd lfelddefta
      421 mykvldvvka hkdswpflep vdesyapnyy qiikapmdis smekklnggq yctkeefvgd
      481 mktmfrnclk yngegseytk maynlercfh rammkhfpge dgdtdeefwi redgrrekrs
      541 rrtgrssags vwtrsrdpdg pgkrqqrlen ggkpppyrat prapasssss ssfssssaed
      601 psgnpmqssq evgpsngrgf phslqygsmp spvphpsqmr pavpgtfgpl rgsdptklyg
      661 sprvpephpg dlvqqhqhfa mqpavglseh rghrlaapek qacagpthvs glgprpgalq
      721 lgrmsgpppd avyppgqfqq gflpprhngp plrqpessev ppghmyrpyk ylnrahpalw
      781 ngshgpagqg tmgpeekapm gpgpslqpra mghmmdpram rpplppsqwt eqsnflphgv
      841 ppsgyirppg katgqrmpqp pgtlfggppq vqrgcqggds mmdspemiam qqlssrvcpp
      901 gvpyhprqpp pphlpgpfpq lahaasaaqa pkpimgngns qdptgqtmdp esnqveppag
      961 vdekaqcigi pdgaytkllp hpkpplpmec trralppdge gdgssvkgdm kagqskgawp
     1021 vesgytggpg cmrdlvptse rggplpenga asegptasae gkglaanlle kplcsggkal
     1081 peaavpcvgq gtglptmdas svgaapnqfh plympgleyp nsagryhinp slqgfgpvmg
     1141 gkppppashp qhfpprgfqp nsahpgvfpr yrppqgmpyp yqpqpqpsyh hyqrpayyac
     1201 pqgysdwqrp lhpqaspsgh ptthpplarp pfpdrgsasg lqgcevlsta laspsrmdva
     1261 sakevspsdg qdlgpeeeks eesqerpesp kefldldnhn aatkrqssva ageflygapp
     1321 phlgsgmgfs ppafpphgvm lqtgspyasr hptshfqprt ygspmnahls hhpasgqang
     1381 lsqegplyrc reenvghfqa llmeqrgsgg gmggppqdly rpsgvqmhqa qvpfpkmpta
     1441 tmsredltpq kpsalpldqs
//
LOCUS       XP_009555384             862 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-17 receptor A isoform X1 [Cuculus canorus].
ACCESSION   XP_009555384
VERSION     XP_009555384.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557089.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555384.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..862
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..862
                     /product="interleukin-17 receptor A isoform X1"
                     /calculated_mol_wt=98113
     Region          44..198
                     /region_name="IL17R_fnIII_D1"
                     /note="Interleukin-17 receptor, fibronectin-III-like
                     domain 1; pfam16556"
                     /db_xref="CDD:435426"
     Region          199..299
                     /region_name="IL17R_fnIII_D2"
                     /note="Interleukin 17 receptor D; pfam16578"
                     /db_xref="CDD:465185"
     Region          371..528
                     /region_name="SEFIR"
                     /note="SEFIR domain; pfam08357"
                     /db_xref="CDD:254756"
     CDS             1..862
                     /gene="IL17RA"
                     /coded_by="XM_009557089.2:26..2614"
                     /db_xref="GeneID:104055900"
ORIGIN      
        1 magsaprrqp lelvffiffi ppagaalrll ldaappfncs qpdlnclvrn stcmeaswmq
       61 vrmwtpsaps slhvssdvfh qmdgnllpvl riewkvatda siqylqgael avmqvnsnqq
      121 vcaqydfqnn lplqvrpdgg rwnftfdrfe vepgqtyqvt vyhlpklsvd gdynrkstsf
      181 tmpdcrdplm krtvsciktg slwepriqgk slddttllvs fnpwmepary qihvasflne
      241 mkckiitrdf tegglqqqvn vtikiernir accdyeiqiq pffascgtdc lrhsafipca
      301 papssdpsgd mfiwfywcit gicvllvgsv iagvicmtkk raghqrekwn hnelqtaapy
      361 sdfplpplkp rkvwivysad hllyvdvvlk faeflmtvcg tavaldlled hqiselgplp
      421 wltrqkkeme dlsskiiilc srgtqakwqa mlgsepvclk qdqqkpmgdl ftpalnlilp
      481 dfkkpacfgm yivcyfegis seedipdlfn vtsryqlmdk fediyfriqd lekfepgrih
      541 riqeitaeny idtpsgrklk eavqkfknwq tehpdwfese ticldndeel qslsresqvd
      601 sllseqggiv khqlqlqepd pnccyvvnlh mhegesrgck lqpqlnpcgd ltsrtmvlpt
      661 deaslvqvve pvssmedrni lahhvlsned smegvplles rfpvrnniil hddsevsvvd
      721 ddqspenlsg elrhhlnglm yslyqqhvip sepslcqeea drqqqlvfdd qckdqrqsvq
      781 sdqgyisrcs plppddlvee eeeeeeeeed qenqvvfqel spevlnslks lqqqllfqdi
      841 qqssdwgypa evmdsgqsle dc
//
LOCUS       XP_053911657             861 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-17 receptor A isoform X2 [Cuculus canorus].
ACCESSION   XP_053911657
VERSION     XP_053911657.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055682.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..861
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..861
                     /product="interleukin-17 receptor A isoform X2"
                     /calculated_mol_wt=98042
     Region          44..198
                     /region_name="IL17R_fnIII_D1"
                     /note="Interleukin-17 receptor, fibronectin-III-like
                     domain 1; pfam16556"
                     /db_xref="CDD:435426"
     Region          199..299
                     /region_name="IL17R_fnIII_D2"
                     /note="Interleukin 17 receptor D; pfam16578"
                     /db_xref="CDD:465185"
     Region          370..527
                     /region_name="SEFIR"
                     /note="SEFIR domain; pfam08357"
                     /db_xref="CDD:254756"
     CDS             1..861
                     /gene="IL17RA"
                     /coded_by="XM_054055682.1:26..2611"
                     /db_xref="GeneID:104055900"
ORIGIN      
        1 magsaprrqp lelvffiffi ppagaalrll ldaappfncs qpdlnclvrn stcmeaswmq
       61 vrmwtpsaps slhvssdvfh qmdgnllpvl riewkvatda siqylqgael avmqvnsnqq
      121 vcaqydfqnn lplqvrpdgg rwnftfdrfe vepgqtyqvt vyhlpklsvd gdynrkstsf
      181 tmpdcrdplm krtvsciktg slwepriqgk slddttllvs fnpwmepary qihvasflne
      241 mkckiitrdf tegglqqqvn vtikiernir accdyeiqiq pffascgtdc lrhsafipca
      301 papssdpsgd mfiwfywcit gicvllvgsv iagvicmtkk raghqrekwn hnelqtapys
      361 dfplpplkpr kvwivysadh llyvdvvlkf aeflmtvcgt avaldlledh qiselgplpw
      421 ltrqkkemed lsskiiilcs rgtqakwqam lgsepvclkq dqqkpmgdlf tpalnlilpd
      481 fkkpacfgmy ivcyfegiss eedipdlfnv tsryqlmdkf ediyfriqdl ekfepgrihr
      541 iqeitaenyi dtpsgrklke avqkfknwqt ehpdwfeset icldndeelq slsresqvds
      601 llseqggivk hqlqlqepdp nccyvvnlhm hegesrgckl qpqlnpcgdl tsrtmvlptd
      661 easlvqvvep vssmedrnil ahhvlsneds megvpllesr fpvrnniilh ddsevsvvdd
      721 dqspenlsge lrhhlnglmy slyqqhvips epslcqeead rqqqlvfddq ckdqrqsvqs
      781 dqgyisrcsp lppddlveee eeeeeeeedq enqvvfqels pevlnslksl qqqllfqdiq
      841 qssdwgypae vmdsgqsled c
//
LOCUS       XP_053911711             828 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-17 receptor A isoform X3 [Cuculus canorus].
ACCESSION   XP_053911711
VERSION     XP_053911711.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055736.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..828
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..828
                     /product="interleukin-17 receptor A isoform X3"
                     /calculated_mol_wt=94335
     Region          44..198
                     /region_name="IL17R_fnIII_D1"
                     /note="Interleukin-17 receptor, fibronectin-III-like
                     domain 1; pfam16556"
                     /db_xref="CDD:435426"
     Region          199..299
                     /region_name="IL17R_fnIII_D2"
                     /note="Interleukin 17 receptor D; pfam16578"
                     /db_xref="CDD:465185"
     Region          337..494
                     /region_name="SEFIR"
                     /note="SEFIR domain; pfam08357"
                     /db_xref="CDD:254756"
     CDS             1..828
                     /gene="IL17RA"
                     /coded_by="XM_054055736.1:26..2512"
                     /db_xref="GeneID:104055900"
ORIGIN      
        1 magsaprrqp lelvffiffi ppagaalrll ldaappfncs qpdlnclvrn stcmeaswmq
       61 vrmwtpsaps slhvssdvfh qmdgnllpvl riewkvatda siqylqgael avmqvnsnqq
      121 vcaqydfqnn lplqvrpdgg rwnftfdrfe vepgqtyqvt vyhlpklsvd gdynrkstsf
      181 tmpdcrdplm krtvsciktg slwepriqgk slddttllvs fnpwmepary qihvasflne
      241 mkckiitrdf tegglqqqvn vtikiernir accdyeiqiq pffascgtdc lrhsafipca
      301 papssdpsgh qrekwnhnel qtaapysdfp lpplkprkvw ivysadhlly vdvvlkfaef
      361 lmtvcgtava ldlledhqis elgplpwltr qkkemedlss kiiilcsrgt qakwqamlgs
      421 epvclkqdqq kpmgdlftpa lnlilpdfkk pacfgmyivc yfegisseed ipdlfnvtsr
      481 yqlmdkfedi yfriqdlekf epgrihriqe itaenyidtp sgrklkeavq kfknwqtehp
      541 dwfeseticl dndeelqsls resqvdslls eqggivkhql qlqepdpncc yvvnlhmheg
      601 esrgcklqpq lnpcgdltsr tmvlptdeas lvqvvepvss medrnilahh vlsnedsmeg
      661 vpllesrfpv rnniilhdds evsvvdddqs penlsgelrh hlnglmysly qqhvipseps
      721 lcqeeadrqq qlvfddqckd qrqsvqsdqg yisrcsplpp ddlveeeeee eeeeedqenq
      781 vvfqelspev lnslkslqqq llfqdiqqss dwgypaevmd sgqsledc
//
LOCUS       XP_053911783             827 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-17 receptor A isoform X4 [Cuculus canorus].
ACCESSION   XP_053911783
VERSION     XP_053911783.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055808.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..827
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..827
                     /product="interleukin-17 receptor A isoform X4"
                     /calculated_mol_wt=94264
     Region          44..198
                     /region_name="IL17R_fnIII_D1"
                     /note="Interleukin-17 receptor, fibronectin-III-like
                     domain 1; pfam16556"
                     /db_xref="CDD:435426"
     Region          199..299
                     /region_name="IL17R_fnIII_D2"
                     /note="Interleukin 17 receptor D; pfam16578"
                     /db_xref="CDD:465185"
     Region          336..493
                     /region_name="SEFIR"
                     /note="SEFIR domain; pfam08357"
                     /db_xref="CDD:254756"
     CDS             1..827
                     /gene="IL17RA"
                     /coded_by="XM_054055808.1:26..2509"
                     /db_xref="GeneID:104055900"
ORIGIN      
        1 magsaprrqp lelvffiffi ppagaalrll ldaappfncs qpdlnclvrn stcmeaswmq
       61 vrmwtpsaps slhvssdvfh qmdgnllpvl riewkvatda siqylqgael avmqvnsnqq
      121 vcaqydfqnn lplqvrpdgg rwnftfdrfe vepgqtyqvt vyhlpklsvd gdynrkstsf
      181 tmpdcrdplm krtvsciktg slwepriqgk slddttllvs fnpwmepary qihvasflne
      241 mkckiitrdf tegglqqqvn vtikiernir accdyeiqiq pffascgtdc lrhsafipca
      301 papssdpsgh qrekwnhnel qtapysdfpl pplkprkvwi vysadhllyv dvvlkfaefl
      361 mtvcgtaval dlledhqise lgplpwltrq kkemedlssk iiilcsrgtq akwqamlgse
      421 pvclkqdqqk pmgdlftpal nlilpdfkkp acfgmyivcy fegisseedi pdlfnvtsry
      481 qlmdkfediy friqdlekfe pgrihriqei taenyidtps grklkeavqk fknwqtehpd
      541 wfeseticld ndeelqslsr esqvdsllse qggivkhqlq lqepdpnccy vvnlhmhege
      601 srgcklqpql npcgdltsrt mvlptdeasl vqvvepvssm edrnilahhv lsnedsmegv
      661 pllesrfpvr nniilhddse vsvvdddqsp enlsgelrhh lnglmyslyq qhvipsepsl
      721 cqeeadrqqq lvfddqckdq rqsvqsdqgy isrcsplppd dlveeeeeee eeeedqenqv
      781 vfqelspevl nslkslqqql lfqdiqqssd wgypaevmds gqsledc
//
LOCUS       XP_053911864             607 aa            linear   VRT 09-MAR-2023
DEFINITION  mRNA-decapping enzyme 1B isoform X1 [Cuculus canorus].
ACCESSION   XP_053911864
VERSION     XP_053911864.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055889.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..607
                     /product="mRNA-decapping enzyme 1B isoform X1"
                     /calculated_mol_wt=66565
     Region          17..132
                     /region_name="Dcp1"
                     /note="mRNA decapping enzyme 1 (Dcp1); cd09804"
                     /db_xref="CDD:197362"
     Site            order(18,20..21,24..25,35,37,59,76..78,81,83)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:197362"
     Region          565..605
                     /region_name="mRNA_decap_C"
                     /note="mRNA-decapping enzyme C-terminus; pfam16741"
                     /db_xref="CDD:465253"
     CDS             1..607
                     /gene="DCP1B"
                     /coded_by="XM_054055889.1:41..1864"
                     /db_xref="GeneID:104055919"
ORIGIN      
        1 maaavagaav pgkgldisla alqqhdpyis sivdvasqva lytfghrane wektdvegtl
       61 fvytrsaspr hgftimnrls menrtepitk dldfqlqdpf llyrnarlsi ygiwfydkee
      121 cqriaelmkn ltqqeqfkaq qgtgtgvspm imnsannkev dilrmltkak deytkcktcs
      181 epkqitsssa iynnpnlikp ipvkpsenqh qrisqqsknv dpepqhlsln alfgkqekpd
      241 vseplskqhq enhpvkqgvv rslsyeepsr hspsaekqlc paiqklmvrg tdlhplaefp
      301 enrlcengni hpvgenftgl fqpvtshsia tshvvqdtag tqsllqklqc qsgsvtkmdp
      361 gatgsansta svfsrtpaav gaptapvnnm sqpplvyfng flrgqtlesq tlgkeqsklp
      421 rqplslsgnq aansgvispq ellkklqivq qeqqlhvssr ptlaakfpvv tqntntlkpl
      481 dswiekapaa ekqsslfqvi spqripatvt ptllmspmvf tqstpappka nesarlaaan
      541 qepaassasl llplqtpeps vvnnssmtkm qlqetllhli qnddnflnii yeaylfsvrk
      601 asmkkam
//
LOCUS       XP_053911931             564 aa            linear   VRT 09-MAR-2023
DEFINITION  mRNA-decapping enzyme 1B isoform X2 [Cuculus canorus].
ACCESSION   XP_053911931
VERSION     XP_053911931.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055956.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..564
                     /product="mRNA-decapping enzyme 1B isoform X2"
                     /calculated_mol_wt=61759
     Region          17..132
                     /region_name="Dcp1"
                     /note="mRNA decapping enzyme 1 (Dcp1); cd09804"
                     /db_xref="CDD:197362"
     Site            order(18,20..21,24..25,35,37,59,76..78,81,83)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:197362"
     Region          522..562
                     /region_name="mRNA_decap_C"
                     /note="mRNA-decapping enzyme C-terminus; pfam16741"
                     /db_xref="CDD:465253"
     CDS             1..564
                     /gene="DCP1B"
                     /coded_by="XM_054055956.1:41..1735"
                     /db_xref="GeneID:104055919"
ORIGIN      
        1 maaavagaav pgkgldisla alqqhdpyis sivdvasqva lytfghrane wektdvegtl
       61 fvytrsaspr hgftimnrls menrtepitk dldfqlqdpf llyrnarlsi ygiwfydkee
      121 cqriaelmkn ltqqeqfkaq qgtgtgvspm imnsannkev dilrmltkak deytknvdpe
      181 pqhlslnalf gkqekpdvse plskqhqenh pvkqgvvrsl syeepsrhsp saekqlcpai
      241 qklmvrgtdl hplaefpenr lcengnihpv genftglfqp vtshsiatsh vvqdtagtqs
      301 llqklqcqsg svtkmdpgat gsanstasvf srtpaavgap tapvnnmsqp plvyfngflr
      361 gqtlesqtlg keqsklprqp lslsgnqaan sgvispqell kklqivqqeq qlhvssrptl
      421 aakfpvvtqn tntlkpldsw iekapaaekq sslfqvispq ripatvtptl lmspmvftqs
      481 tpappkanes arlaaanqep aassaslllp lqtpepsvvn nssmtkmqlq etllhliqnd
      541 dnflniiyea ylfsvrkasm kkam
//
LOCUS       XP_009555381             515 aa            linear   VRT 09-MAR-2023
DEFINITION  adenosine deaminase 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_009555381
VERSION     XP_009555381.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557086.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555381.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..515
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..515
                     /product="adenosine deaminase 2 isoform X1"
                     /calculated_mol_wt=58070
     Region          31..506
                     /region_name="adm_rel"
                     /note="adenosine deaminase-related growth factor;
                     TIGR01431"
                     /db_xref="CDD:273620"
     CDS             1..515
                     /gene="ADA2"
                     /coded_by="XM_009557086.2:170..1717"
                     /db_xref="GeneID:104055898"
ORIGIN      
        1 mnpptvqsir laylllnlas lclptplwkd rdslmqeeka yqtggnlvls iqeqqlstkl
       61 vnlkkkevat amatgqfpps mhffrakgli dqstvfsilk rmpkgavlhl hdyailnvdw
      121 lvynatylpn cyicfthtgt vrfhfskphp phrvpaqcsq wvlletyrkq lrnvtefdsg
      181 llrnltlvtd apelaypsqt fiwkrfeevf liasglicya pvfkayfyqg llelyednvq
      241 yveirailpa vyeldgtqhn kswsvaayrd vtrqfvkehp dflgakiift ahrmlnvsqi
      301 keavvtamal rahfpdtlag fdlvgdedeg hslwelkdal tipyslgvkl pyffhagetd
      361 wqgtsvdnnv ldalllntsr ighglalikh pvakslslkr dipvevcpis nqvlllvtdl
      421 rshpaanlma eghpivispd dppifgakgv sydfyevfma iggmnadlrt lkqlalnsik
      481 ysamlpdeka rakevwqkkw drfvaelsds flsel
//
LOCUS       XP_053911946             515 aa            linear   VRT 09-MAR-2023
DEFINITION  adenosine deaminase 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911946
VERSION     XP_053911946.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055971.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..515
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..515
                     /product="adenosine deaminase 2 isoform X1"
                     /calculated_mol_wt=58070
     Region          31..506
                     /region_name="adm_rel"
                     /note="adenosine deaminase-related growth factor;
                     TIGR01431"
                     /db_xref="CDD:273620"
     CDS             1..515
                     /gene="ADA2"
                     /coded_by="XM_054055971.1:521..2068"
                     /db_xref="GeneID:104055898"
ORIGIN      
        1 mnpptvqsir laylllnlas lclptplwkd rdslmqeeka yqtggnlvls iqeqqlstkl
       61 vnlkkkevat amatgqfpps mhffrakgli dqstvfsilk rmpkgavlhl hdyailnvdw
      121 lvynatylpn cyicfthtgt vrfhfskphp phrvpaqcsq wvlletyrkq lrnvtefdsg
      181 llrnltlvtd apelaypsqt fiwkrfeevf liasglicya pvfkayfyqg llelyednvq
      241 yveirailpa vyeldgtqhn kswsvaayrd vtrqfvkehp dflgakiift ahrmlnvsqi
      301 keavvtamal rahfpdtlag fdlvgdedeg hslwelkdal tipyslgvkl pyffhagetd
      361 wqgtsvdnnv ldalllntsr ighglalikh pvakslslkr dipvevcpis nqvlllvtdl
      421 rshpaanlma eghpivispd dppifgakgv sydfyevfma iggmnadlrt lkqlalnsik
      481 ysamlpdeka rakevwqkkw drfvaelsds flsel
//
LOCUS       XP_053911956             418 aa            linear   VRT 09-MAR-2023
DEFINITION  adenosine deaminase 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053911956
VERSION     XP_053911956.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055981.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..418
                     /product="adenosine deaminase 2 isoform X2"
                     /calculated_mol_wt=47313
     Region          31..>412
                     /region_name="adm_rel"
                     /note="adenosine deaminase-related growth factor;
                     TIGR01431"
                     /db_xref="CDD:273620"
     CDS             1..418
                     /gene="ADA2"
                     /coded_by="XM_054055981.1:170..1426"
                     /db_xref="GeneID:104055898"
ORIGIN      
        1 mnpptvqsir laylllnlas lclptplwkd rdslmqeeka yqtggnlvls iqeqqlstkl
       61 vnlkkkevat amatgqfpps mhffrakgli dqstvfsilk rmpkgavlhl hdyailnvdw
      121 lvynatylpn cyicfthtgt vrfhfskphp phrvpaqcsq wvlletyrkq lrnvtefdsg
      181 llrnltlvtd apelaypsqt fiwkrfeevf liasglicya pvfkayfyqg llelyednvq
      241 yveirailpa vyeldgtqhn kswsvaayrd vtrqfvkehp dflgakiift ahrmlnvsqi
      301 keavvtamal rahfpdtlag fdlvgdedeg hslwelkdal tipyslgvkl pyffhagetd
      361 wqgtsvdnnv ldalllntsr ighglalikh pvakslslkr dipvevcpis nqqfraec
//
LOCUS       XP_053911967             415 aa            linear   VRT 09-MAR-2023
DEFINITION  adenosine deaminase 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053911967
VERSION     XP_053911967.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055992.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..415
                     /product="adenosine deaminase 2 isoform X3"
                     /calculated_mol_wt=46961
     Region          31..>412
                     /region_name="adm_rel"
                     /note="adenosine deaminase-related growth factor;
                     TIGR01431"
                     /db_xref="CDD:273620"
     CDS             1..415
                     /gene="ADA2"
                     /coded_by="XM_054055992.1:170..1417"
                     /db_xref="GeneID:104055898"
ORIGIN      
        1 mnpptvqsir laylllnlas lclptplwkd rdslmqeeka yqtggnlvls iqeqqlstkl
       61 vnlkkkevat amatgqfpps mhffrakgli dqstvfsilk rmpkgavlhl hdyailnvdw
      121 lvynatylpn cyicfthtgt vrfhfskphp phrvpaqcsq wvlletyrkq lrnvtefdsg
      181 llrnltlvtd apelaypsqt fiwkrfeevf liasglicya pvfkayfyqg llelyednvq
      241 yveirailpa vyeldgtqhn kswsvaayrd vtrqfvkehp dflgakiift ahrmlnvsqi
      301 keavvtamal rahfpdtlag fdlvgdedeg hslwelkdal tipyslgvkl pyffhagetd
      361 wqgtsvdnnv ldalllntsr ighglalikh pvakslslkr dipvevcpis nqrnl
//
LOCUS       XP_053911972             515 aa            linear   VRT 09-MAR-2023
DEFINITION  adenosine deaminase 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911972
VERSION     XP_053911972.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055997.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..515
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..515
                     /product="adenosine deaminase 2 isoform X1"
                     /calculated_mol_wt=58070
     Region          31..506
                     /region_name="adm_rel"
                     /note="adenosine deaminase-related growth factor;
                     TIGR01431"
                     /db_xref="CDD:273620"
     CDS             1..515
                     /gene="ADA2"
                     /coded_by="XM_054055997.1:205..1752"
                     /db_xref="GeneID:104055898"
ORIGIN      
        1 mnpptvqsir laylllnlas lclptplwkd rdslmqeeka yqtggnlvls iqeqqlstkl
       61 vnlkkkevat amatgqfpps mhffrakgli dqstvfsilk rmpkgavlhl hdyailnvdw
      121 lvynatylpn cyicfthtgt vrfhfskphp phrvpaqcsq wvlletyrkq lrnvtefdsg
      181 llrnltlvtd apelaypsqt fiwkrfeevf liasglicya pvfkayfyqg llelyednvq
      241 yveirailpa vyeldgtqhn kswsvaayrd vtrqfvkehp dflgakiift ahrmlnvsqi
      301 keavvtamal rahfpdtlag fdlvgdedeg hslwelkdal tipyslgvkl pyffhagetd
      361 wqgtsvdnnv ldalllntsr ighglalikh pvakslslkr dipvevcpis nqvlllvtdl
      421 rshpaanlma eghpivispd dppifgakgv sydfyevfma iggmnadlrt lkqlalnsik
      481 ysamlpdeka rakevwqkkw drfvaelsds flsel
//
LOCUS       XP_053911985             472 aa            linear   VRT 09-MAR-2023
DEFINITION  bcl-2-like protein 13 [Cuculus canorus].
ACCESSION   XP_053911985
VERSION     XP_053911985.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056010.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..472
                     /product="bcl-2-like protein 13"
                     /calculated_mol_wt=51403
     Region          106..202
                     /region_name="Bcl-2"
                     /note="Apoptosis regulator proteins, Bcl-2 family;
                     pfam00452"
                     /db_xref="CDD:459816"
     Region          <280..420
                     /region_name="rne"
                     /note="ribonuclease E; Reviewed; PRK10811"
                     /db_xref="CDD:236766"
     CDS             1..472
                     /gene="BCL2L13"
                     /coded_by="XM_054056010.1:247..1665"
                     /db_xref="GeneID:104055895"
ORIGIN      
        1 masstavpvg fhyetkyvvl sylgllaqek pqehpppsst qgteqqlmaq halekealek
       61 ikieieeelk hldeeileaf tttgfdchts pvfspanpes siedclahlg ekvsqelkeh
      121 lhkalqslls kpvtyqeyre rtqeaaahas gwnkvlvplv llqqflmelt rrgqeplsal
      181 vnfgvtyled ysadyiiqqg gwgtvftles eeeeypglia edsndiyilt sdnsgqvspp
      241 esptvttswq seslpvslsa sqswhteslp vslgpeswqq vamdpeevks ldsnggaeer
      301 sennssnsdi vhvekeeipe gieeavvsav aaetmqaafp etsaslqevk pqaeiaavek
      361 ahpsallrtk qeekgkvaee lvepeipvls kpvpkvapse ekaapepeki llpreknvgk
      421 eghleeieek sstaeekpil lpegksilly ggaaavaila vavgvalalr kk
//
LOCUS       XP_053911990             472 aa            linear   VRT 09-MAR-2023
DEFINITION  bcl-2-like protein 13 [Cuculus canorus].
ACCESSION   XP_053911990
VERSION     XP_053911990.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056015.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..472
                     /product="bcl-2-like protein 13"
                     /calculated_mol_wt=51403
     Region          106..202
                     /region_name="Bcl-2"
                     /note="Apoptosis regulator proteins, Bcl-2 family;
                     pfam00452"
                     /db_xref="CDD:459816"
     Region          <280..420
                     /region_name="rne"
                     /note="ribonuclease E; Reviewed; PRK10811"
                     /db_xref="CDD:236766"
     CDS             1..472
                     /gene="BCL2L13"
                     /coded_by="XM_054056015.1:562..1980"
                     /db_xref="GeneID:104055895"
ORIGIN      
        1 masstavpvg fhyetkyvvl sylgllaqek pqehpppsst qgteqqlmaq halekealek
       61 ikieieeelk hldeeileaf tttgfdchts pvfspanpes siedclahlg ekvsqelkeh
      121 lhkalqslls kpvtyqeyre rtqeaaahas gwnkvlvplv llqqflmelt rrgqeplsal
      181 vnfgvtyled ysadyiiqqg gwgtvftles eeeeypglia edsndiyilt sdnsgqvspp
      241 esptvttswq seslpvslsa sqswhteslp vslgpeswqq vamdpeevks ldsnggaeer
      301 sennssnsdi vhvekeeipe gieeavvsav aaetmqaafp etsaslqevk pqaeiaavek
      361 ahpsallrtk qeekgkvaee lvepeipvls kpvpkvapse ekaapepeki llpreknvgk
      421 eghleeieek sstaeekpil lpegksilly ggaaavaila vavgvalalr kk
//
LOCUS       XP_053911998             472 aa            linear   VRT 09-MAR-2023
DEFINITION  bcl-2-like protein 13 [Cuculus canorus].
ACCESSION   XP_053911998
VERSION     XP_053911998.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056023.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..472
                     /product="bcl-2-like protein 13"
                     /calculated_mol_wt=51403
     Region          106..202
                     /region_name="Bcl-2"
                     /note="Apoptosis regulator proteins, Bcl-2 family;
                     pfam00452"
                     /db_xref="CDD:459816"
     Region          <280..420
                     /region_name="rne"
                     /note="ribonuclease E; Reviewed; PRK10811"
                     /db_xref="CDD:236766"
     CDS             1..472
                     /gene="BCL2L13"
                     /coded_by="XM_054056023.1:344..1762"
                     /db_xref="GeneID:104055895"
ORIGIN      
        1 masstavpvg fhyetkyvvl sylgllaqek pqehpppsst qgteqqlmaq halekealek
       61 ikieieeelk hldeeileaf tttgfdchts pvfspanpes siedclahlg ekvsqelkeh
      121 lhkalqslls kpvtyqeyre rtqeaaahas gwnkvlvplv llqqflmelt rrgqeplsal
      181 vnfgvtyled ysadyiiqqg gwgtvftles eeeeypglia edsndiyilt sdnsgqvspp
      241 esptvttswq seslpvslsa sqswhteslp vslgpeswqq vamdpeevks ldsnggaeer
      301 sennssnsdi vhvekeeipe gieeavvsav aaetmqaafp etsaslqevk pqaeiaavek
      361 ahpsallrtk qeekgkvaee lvepeipvls kpvpkvapse ekaapepeki llpreknvgk
      421 eghleeieek sstaeekpil lpegksilly ggaaavaila vavgvalalr kk
//
LOCUS       XP_053912008             422 aa            linear   VRT 09-MAR-2023
DEFINITION  haloacid dehalogenase-like hydrolase domain-containing 5 [Cuculus
            canorus].
ACCESSION   XP_053912008
VERSION     XP_053912008.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056033.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..422
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..422
                     /product="haloacid dehalogenase-like hydrolase
                     domain-containing 5"
                     /calculated_mol_wt=46741
     Region          35..313
                     /region_name="CECR5"
                     /note="HAD-superfamily class IIA hydrolase, TIGR01456,
                     CECR5"
                     /db_xref="CDD:200106"
     CDS             1..422
                     /gene="HDHD5"
                     /coded_by="XM_054056033.1:58..1326"
                     /db_xref="GeneID:104055899"
ORIGIN      
        1 maglalrgcc graprgllrs lparrgcaga rppafgflld vdgvlvrgsq alpaarrafq
       61 rladtsgrlr vpvvfltnag nclraakaqe isralgmqvs peqvilshsp lqlfsqfhek
      121 cmlvagqgpv eenaqnlgfk hvitiealrk ayplldmvdq srrpkelppp ttgfptiegv
      181 ilfgepvrwe tslqliidvl lsngnpgael qdipyphlpi lacnmdllwm aeakmprfgh
      241 gtfllcleni ykkvtgrelk yealigkpst vtyryaeyli kqqaekqgwk spirrlyavg
      301 dnpmsdvyga nlynnylksa hqnqvqagvk rspqatspqt ehhlklredc nnsvescesi
      361 lvctgvyrhn advpsntekc tmetvfhghr dfcfdpclve asyivqdvnd avklafkken
      421 ws
//
LOCUS       XP_053912015             226 aa            linear   VRT 09-MAR-2023
DEFINITION  V-type proton ATPase subunit E 1 [Cuculus canorus].
ACCESSION   XP_053912015
VERSION     XP_053912015.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056040.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..226
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..226
                     /product="V-type proton ATPase subunit E 1"
                     /calculated_mol_wt=25918
     Region          18..216
                     /region_name="vATP-synt_E"
                     /note="ATP synthase (E/31 kDa) subunit; pfam01991"
                     /db_xref="CDD:396537"
     CDS             1..226
                     /gene="ATP6V1E1"
                     /coded_by="XM_054056040.1:132..812"
                     /db_xref="GeneID:104055896"
ORIGIN      
        1 malsdadvqk qikhmmafie qeanekaeei dakaeeefni ekgrlvqtqr lkimeyyekk
       61 ekqieqqkki qmsnlmnqar lkvlkarddl iadllneakq rlakvvkdaa ryqtlldglv
      121 lqgfyqllep rivvrcrkqd lpmvktavqk sipiyknatk rdvdvhidqd nflpediagg
      181 veiynsdgki kvsntlesrl dlvaqqmmpe irvalfgana nrkfld
//
LOCUS       XP_053912031             190 aa            linear   VRT 09-MAR-2023
DEFINITION  BH3-interacting domain death agonist [Cuculus canorus].
ACCESSION   XP_053912031
VERSION     XP_053912031.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056056.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..190
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..190
                     /product="BH3-interacting domain death agonist"
                     /calculated_mol_wt=21393
     Region          9..186
                     /region_name="BID"
                     /note="BH3 interacting domain (BID); pfam06393"
                     /db_xref="CDD:428916"
     CDS             1..190
                     /gene="BID"
                     /coded_by="XM_054056056.1:147..719"
                     /db_xref="GeneID:104055918"
ORIGIN      
        1 meqidgsvqm ecallysfle vspdckfkeq lhilqsqgim pclrgsydae lelqtdgnrs
       61 ghlqngelgy gpevdeevvr iiaaqlaeig dqfdkeikar vvndlvqhfl nenlsreeit
      121 rrmseavegl araipsdmer ekamlvlamv ltkkiantmp sllqrvfstt vnyisqhlhn
      181 yivrmlpsne
//
LOCUS       XP_053912040             190 aa            linear   VRT 09-MAR-2023
DEFINITION  BH3-interacting domain death agonist [Cuculus canorus].
ACCESSION   XP_053912040
VERSION     XP_053912040.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056065.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..190
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..190
                     /product="BH3-interacting domain death agonist"
                     /calculated_mol_wt=21393
     Region          9..186
                     /region_name="BID"
                     /note="BH3 interacting domain (BID); pfam06393"
                     /db_xref="CDD:428916"
     CDS             1..190
                     /gene="BID"
                     /coded_by="XM_054056065.1:183..755"
                     /db_xref="GeneID:104055918"
ORIGIN      
        1 meqidgsvqm ecallysfle vspdckfkeq lhilqsqgim pclrgsydae lelqtdgnrs
       61 ghlqngelgy gpevdeevvr iiaaqlaeig dqfdkeikar vvndlvqhfl nenlsreeit
      121 rrmseavegl araipsdmer ekamlvlamv ltkkiantmp sllqrvfstt vnyisqhlhn
      181 yivrmlpsne
//
LOCUS       XP_053912049             190 aa            linear   VRT 09-MAR-2023
DEFINITION  BH3-interacting domain death agonist [Cuculus canorus].
ACCESSION   XP_053912049
VERSION     XP_053912049.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056074.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..190
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..190
                     /product="BH3-interacting domain death agonist"
                     /calculated_mol_wt=21393
     Region          9..186
                     /region_name="BID"
                     /note="BH3 interacting domain (BID); pfam06393"
                     /db_xref="CDD:428916"
     CDS             1..190
                     /gene="BID"
                     /coded_by="XM_054056074.1:206..778"
                     /db_xref="GeneID:104055918"
ORIGIN      
        1 meqidgsvqm ecallysfle vspdckfkeq lhilqsqgim pclrgsydae lelqtdgnrs
       61 ghlqngelgy gpevdeevvr iiaaqlaeig dqfdkeikar vvndlvqhfl nenlsreeit
      121 rrmseavegl araipsdmer ekamlvlamv ltkkiantmp sllqrvfstt vnyisqhlhn
      181 yivrmlpsne
//
LOCUS       XP_053912056             190 aa            linear   VRT 09-MAR-2023
DEFINITION  BH3-interacting domain death agonist [Cuculus canorus].
ACCESSION   XP_053912056
VERSION     XP_053912056.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056081.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..190
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..190
                     /product="BH3-interacting domain death agonist"
                     /calculated_mol_wt=21393
     Region          9..186
                     /region_name="BID"
                     /note="BH3 interacting domain (BID); pfam06393"
                     /db_xref="CDD:428916"
     CDS             1..190
                     /gene="BID"
                     /coded_by="XM_054056081.1:85..657"
                     /db_xref="GeneID:104055918"
ORIGIN      
        1 meqidgsvqm ecallysfle vspdckfkeq lhilqsqgim pclrgsydae lelqtdgnrs
       61 ghlqngelgy gpevdeevvr iiaaqlaeig dqfdkeikar vvndlvqhfl nenlsreeit
      121 rrmseavegl araipsdmer ekamlvlamv ltkkiantmp sllqrvfstt vnyisqhlhn
      181 yivrmlpsne
//
LOCUS       XP_053912077            1346 aa            linear   VRT 09-MAR-2023
DEFINITION  mitogen-activated protein kinase kinase kinase 15 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053912077
VERSION     XP_053912077.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056102.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1346
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1346
                     /product="mitogen-activated protein kinase kinase kinase
                     15 isoform X1"
                     /calculated_mol_wt=151304
     Region          63..98
                     /region_name="DRHyd-ASK"
                     /note="Deoxyribohydrolase (DRHyd) domain of the ASK
                     signalosome; pfam20309"
                     /db_xref="CDD:466459"
     Region          113..515
                     /region_name="MAP3K_TRAF_bd"
                     /note="MAP3K TRAFs-binding domain; pfam13281"
                     /db_xref="CDD:463827"
     Region          526..625
                     /region_name="ASK_PH"
                     /note="ASK kinase PH domain; pfam19039"
                     /db_xref="CDD:465956"
     Region          644..909
                     /region_name="STKc_ASK"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Apoptosis signal-regulating kinase; cd06624"
                     /db_xref="CDD:270794"
     Site            order(659..663,667,680,682,711,727..730,733..734,737,774,
                     776..779,781,792..793,796,810..813,815,844,853)
                     /site_type="active"
                     /db_xref="CDD:270794"
     Site            order(659..663,667,680,682,711,727..730,732..734,737,
                     778..779,781,792..794)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270794"
     Site            order(662..663,774,776..778,796,810..813,815,844,853)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270794"
     Site            792..815
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270794"
     Region          1010..1141
                     /region_name="HisK-N-like"
                     /note="HisK-N-like globin domain of the ASK signalosome;
                     pfam20302"
                     /db_xref="CDD:466452"
     CDS             1..1346
                     /gene="MAP3K15"
                     /coded_by="XM_054056102.1:188..4228"
                     /db_xref="GeneID:104063409"
ORIGIN      
        1 messaaaeps epelpaagpa eaeaaesgaa sprprclrav yvlnepgksg gaarspeega
       61 rhcllracea egaqlgtvhf geldfgetav ldafydadva vvdmsdiskq pslfyhlgvr
      121 esfdmannvi lyhdtdadta qslkdmvsqk ntvanhkafl rvqvppeyhs gnligkassg
      181 nyyfipyivt psadyfcces daqrraseym qpswdnilgp lcvplvdkfi dllkdvhvts
      241 cayyketlln dirkarekyq gdelakelar iklrmdntev ltsdiiinll lsyrdiqdyd
      301 amvklvetle mlptcdladq hnikfhyafa lnrrnnagdr ekalqvmlqv lqtcdhpapd
      361 mfclcgriyk dmfldsdckd tdsrdhaiew yrkgfelqst lysginlavl llvagqqfes
      421 smelrkigvr lnsllgrkgs lekmnnywdv gqffsvsmla ndvgkavqaa eklfklkppv
      481 wylrslvqnl vliqrfkklt iehsprqerl tfwldiifea tkettnglrf pvlvieptkv
      541 yqpayvsins eaderslslw hvsptemkqi hewnftassi rgisiskfde rccflyvhdn
      601 sddfqiyfst enqcsrfcgl vkeilsdavg stlelegeid gdtleyeydy dengdrvvlg
      661 kgtygvvyag rdlsnqvria ikeiperdsr ysqplheeia lhkylkhrni vqylgsised
      721 gyikifmeqv pggslsallr skwgpvkept ikfytkqile glkylhenqi vhrdikgdnv
      781 lvntysgvvk isdfgaskrl aginpctetf tgtlqymape iidkgprgyg apadiwslgc
      841 tiiematgkp pfhelgepqa amfkvgmfki hpeipeslsa etrafillcf epdptkrvta
      901 adllresflk qvnkgkknri afkptdynrt tslplpvhge qagssssehg svspdsdvqh
      961 dmffekpkrs iaeiqtkhpi shllsvpddc stsedrgtsp sledkdsglf llrkdserra
     1021 ilykilkeeq navasnlqdc iaqsseelql svahikqiig ilrdfirspe qrvmastisk
     1081 lkmdldfdst sinqihlvlf gfqdavnkvl rnhlirphwm famdniirra vqaavtilip
     1141 elrahfepas etegadkdcd eaedsfqpae qngaedpavt sgvstlssvv sheaqqqlsl
     1201 elarlkqetl rllgnlvqke keyqallqqc leqktqelhs lrlklkpedf qwsaasfree
     1261 adpeltkwlk qqgadldaik rfaeedytls tvlnditkdd lrylqlrggl lcriwnailn
     1321 hrqtagmtsv qkvdalegeg amgvnk
//
LOCUS       XP_053912085            1322 aa            linear   VRT 09-MAR-2023
DEFINITION  mitogen-activated protein kinase kinase kinase 15 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053912085
VERSION     XP_053912085.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056110.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1322
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1322
                     /product="mitogen-activated protein kinase kinase kinase
                     15 isoform X2"
                     /calculated_mol_wt=148647
     Region          63..98
                     /region_name="DRHyd-ASK"
                     /note="Deoxyribohydrolase (DRHyd) domain of the ASK
                     signalosome; pfam20309"
                     /db_xref="CDD:466459"
     Region          113..491
                     /region_name="MAP3K_TRAF_bd"
                     /note="MAP3K TRAFs-binding domain; pfam13281"
                     /db_xref="CDD:463827"
     Region          502..601
                     /region_name="ASK_PH"
                     /note="ASK kinase PH domain; pfam19039"
                     /db_xref="CDD:465956"
     Region          620..885
                     /region_name="STKc_ASK"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Apoptosis signal-regulating kinase; cd06624"
                     /db_xref="CDD:270794"
     Site            order(635..639,643,656,658,687,703..706,709..710,713,750,
                     752..755,757,768..769,772,786..789,791,820,829)
                     /site_type="active"
                     /db_xref="CDD:270794"
     Site            order(635..639,643,656,658,687,703..706,708..710,713,
                     754..755,757,768..770)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270794"
     Site            order(638..639,750,752..754,772,786..789,791,820,829)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270794"
     Site            768..791
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270794"
     Region          986..1117
                     /region_name="HisK-N-like"
                     /note="HisK-N-like globin domain of the ASK signalosome;
                     pfam20302"
                     /db_xref="CDD:466452"
     CDS             1..1322
                     /gene="MAP3K15"
                     /coded_by="XM_054056110.1:188..4156"
                     /db_xref="GeneID:104063409"
ORIGIN      
        1 messaaaeps epelpaagpa eaeaaesgaa sprprclrav yvlnepgksg gaarspeega
       61 rhcllracea egaqlgtvhf geldfgetav ldafydadva vvdmsdiskq pslfyhlgvr
      121 esfdmannvi lyhdtdadta qslkdmvsqk ntassgnyyf ipyivtpsad yfccesdaqr
      181 raseymqpsw dnilgplcvp lvdkfidllk dvhvtscayy ketllndirk arekyqgdel
      241 akelariklr mdntevltsd iiinlllsyr diqdydamvk lvetlemlpt cdladqhnik
      301 fhyafalnrr nnagdrekal qvmlqvlqtc dhpapdmfcl cgriykdmfl dsdckdtdsr
      361 dhaiewyrkg felqstlysg inlavlllva gqqfessmel rkigvrlnsl lgrkgslekm
      421 nnywdvgqff svsmlandvg kavqaaeklf klkppvwylr slvqnlvliq rfkkltiehs
      481 prqerltfwl diifeatket tnglrfpvlv ieptkvyqpa yvsinseade rslslwhvsp
      541 temkqihewn ftassirgis iskfderccf lyvhdnsddf qiyfstenqc srfcglvkei
      601 lsdavgstle legeidgdtl eyeydydeng drvvlgkgty gvvyagrdls nqvriaikei
      661 perdsrysqp lheeialhky lkhrnivqyl gsisedgyik ifmeqvpggs lsallrskwg
      721 pvkeptikfy tkqileglky lhenqivhrd ikgdnvlvnt ysgvvkisdf gaskrlagin
      781 pctetftgtl qymapeiidk gprgygapad iwslgctiie matgkppfhe lgepqaamfk
      841 vgmfkihpei peslsaetra fillcfepdp tkrvtaadll resflkqvnk gkknriafkp
      901 tdynrttslp lpvhgeqags sssehgsvsp dsdvqhdmff ekpkrsiaei qtkhpishll
      961 svpddcstse drgtspsled kdsglfllrk dserrailyk ilkeeqnava snlqdciaqs
     1021 seelqlsvah ikqiigilrd firspeqrvm astisklkmd ldfdstsinq ihlvlfgfqd
     1081 avnkvlrnhl irphwmfamd niirravqaa vtilipelra hfepaseteg adkdcdeaed
     1141 sfqpaeqnga edpavtsgvs tlssvvshea qqqlslelar lkqetlrllg nlvqkekeyq
     1201 allqqcleqk tqelhslrlk lkpedfqwsa asfreeadpe ltkwlkqqga dldaikrfae
     1261 edytlstvln ditkddlryl qlrggllcri wnailnhrqt agmtsvqkvd alegegamgv
     1321 nk
//
LOCUS       XP_053912086            1243 aa            linear   VRT 09-MAR-2023
DEFINITION  mitogen-activated protein kinase kinase kinase 15 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053912086
VERSION     XP_053912086.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056111.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1243
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1243
                     /product="mitogen-activated protein kinase kinase kinase
                     15 isoform X3"
                     /calculated_mol_wt=140809
     Region          10..412
                     /region_name="MAP3K_TRAF_bd"
                     /note="MAP3K TRAFs-binding domain; pfam13281"
                     /db_xref="CDD:463827"
     Region          423..522
                     /region_name="ASK_PH"
                     /note="ASK kinase PH domain; pfam19039"
                     /db_xref="CDD:465956"
     Region          541..806
                     /region_name="STKc_ASK"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Apoptosis signal-regulating kinase; cd06624"
                     /db_xref="CDD:270794"
     Site            order(556..560,564,577,579,608,624..627,630..631,634,671,
                     673..676,678,689..690,693,707..710,712,741,750)
                     /site_type="active"
                     /db_xref="CDD:270794"
     Site            order(556..560,564,577,579,608,624..627,629..631,634,
                     675..676,678,689..691)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270794"
     Site            order(559..560,671,673..675,693,707..710,712,741,750)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270794"
     Site            689..712
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270794"
     Region          907..1038
                     /region_name="HisK-N-like"
                     /note="HisK-N-like globin domain of the ASK signalosome;
                     pfam20302"
                     /db_xref="CDD:466452"
     CDS             1..1243
                     /gene="MAP3K15"
                     /coded_by="XM_054056111.1:199..3930"
                     /db_xref="GeneID:104063409"
ORIGIN      
        1 msdiskqpsl fyhlgvresf dmannvilyh dtdadtaqsl kdmvsqkntv anhkaflrvq
       61 vppeyhsgnl igkassgnyy fipyivtpsa dyfccesdaq rraseymqps wdnilgplcv
      121 plvdkfidll kdvhvtscay yketllndir karekyqgde lakelarikl rmdntevlts
      181 diiinlllsy rdiqdydamv klvetlemlp tcdladqhni kfhyafalnr rnnagdreka
      241 lqvmlqvlqt cdhpapdmfc lcgriykdmf ldsdckdtds rdhaiewyrk gfelqstlys
      301 ginlavlllv agqqfessme lrkigvrlns llgrkgslek mnnywdvgqf fsvsmlandv
      361 gkavqaaekl fklkppvwyl rslvqnlvli qrfkkltieh sprqerltfw ldiifeatke
      421 ttnglrfpvl vieptkvyqp ayvsinsead erslslwhvs ptemkqihew nftassirgi
      481 siskfdercc flyvhdnsdd fqiyfstenq csrfcglvke ilsdavgstl elegeidgdt
      541 leyeydyden gdrvvlgkgt ygvvyagrdl snqvriaike iperdsrysq plheeialhk
      601 ylkhrnivqy lgsisedgyi kifmeqvpgg slsallrskw gpvkeptikf ytkqileglk
      661 ylhenqivhr dikgdnvlvn tysgvvkisd fgaskrlagi npctetftgt lqymapeiid
      721 kgprgygapa diwslgctii ematgkppfh elgepqaamf kvgmfkihpe ipeslsaetr
      781 afillcfepd ptkrvtaadl lresflkqvn kgkknriafk ptdynrttsl plpvhgeqag
      841 ssssehgsvs pdsdvqhdmf fekpkrsiae iqtkhpishl lsvpddcsts edrgtspsle
      901 dkdsglfllr kdserraily kilkeeqnav asnlqdciaq sseelqlsva hikqiigilr
      961 dfirspeqrv mastisklkm dldfdstsin qihlvlfgfq davnkvlrnh lirphwmfam
     1021 dniirravqa avtilipelr ahfepasete gadkdcdeae dsfqpaeqng aedpavtsgv
     1081 stlssvvshe aqqqlslela rlkqetlrll gnlvqkekey qallqqcleq ktqelhslrl
     1141 klkpedfqws aasfreeadp eltkwlkqqg adldaikrfa eedytlstvl nditkddlry
     1201 lqlrggllcr iwnailnhrq tagmtsvqkv dalegegamg vnk
//
LOCUS       XP_053912089            1137 aa            linear   VRT 09-MAR-2023
DEFINITION  mitogen-activated protein kinase kinase kinase 15 isoform X4
            [Cuculus canorus].
ACCESSION   XP_053912089
VERSION     XP_053912089.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056114.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1137
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1137
                     /product="mitogen-activated protein kinase kinase kinase
                     15 isoform X4"
                     /calculated_mol_wt=128850
     Region          1..306
                     /region_name="MAP3K_TRAF_bd"
                     /note="MAP3K TRAFs-binding domain; pfam13281"
                     /db_xref="CDD:463827"
     Region          317..416
                     /region_name="ASK_PH"
                     /note="ASK kinase PH domain; pfam19039"
                     /db_xref="CDD:465956"
     Region          435..700
                     /region_name="STKc_ASK"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Apoptosis signal-regulating kinase; cd06624"
                     /db_xref="CDD:270794"
     Site            order(450..454,458,471,473,502,518..521,524..525,528,565,
                     567..570,572,583..584,587,601..604,606,635,644)
                     /site_type="active"
                     /db_xref="CDD:270794"
     Site            order(450..454,458,471,473,502,518..521,523..525,528,
                     569..570,572,583..585)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270794"
     Site            order(453..454,565,567..569,587,601..604,606,635,644)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270794"
     Site            583..606
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270794"
     Region          801..932
                     /region_name="HisK-N-like"
                     /note="HisK-N-like globin domain of the ASK signalosome;
                     pfam20302"
                     /db_xref="CDD:466452"
     CDS             1..1137
                     /gene="MAP3K15"
                     /coded_by="XM_054056114.1:196..3609"
                     /db_xref="GeneID:104063409"
ORIGIN      
        1 mqpswdnilg plcvplvdkf idllkdvhvt scayyketll ndirkareky qgdelakela
       61 riklrmdnte vltsdiiinl llsyrdiqdy damvklvetl emlptcdlad qhnikfhyaf
      121 alnrrnnagd rekalqvmlq vlqtcdhpap dmfclcgriy kdmfldsdck dtdsrdhaie
      181 wyrkgfelqs tlysginlav lllvagqqfe ssmelrkigv rlnsllgrkg slekmnnywd
      241 vgqffsvsml andvgkavqa aeklfklkpp vwylrslvqn lvliqrfkkl tiehsprqer
      301 ltfwldiife atkettnglr fpvlvieptk vyqpayvsin seaderslsl whvsptemkq
      361 ihewnftass irgisiskfd erccflyvhd nsddfqiyfs tenqcsrfcg lvkeilsdav
      421 gstlelegei dgdtleyeyd ydengdrvvl gkgtygvvya grdlsnqvri aikeiperds
      481 rysqplheei alhkylkhrn ivqylgsise dgyikifmeq vpggslsall rskwgpvkep
      541 tikfytkqil eglkylhenq ivhrdikgdn vlvntysgvv kisdfgaskr laginpctet
      601 ftgtlqymap eiidkgprgy gapadiwslg ctiiematgk ppfhelgepq aamfkvgmfk
      661 ihpeipesls aetrafillc fepdptkrvt aadllresfl kqvnkgkknr iafkptdynr
      721 ttslplpvhg eqagsssseh gsvspdsdvq hdmffekpkr siaeiqtkhp ishllsvpdd
      781 cstsedrgts psledkdsgl fllrkdserr ailykilkee qnavasnlqd ciaqsseelq
      841 lsvahikqii gilrdfirsp eqrvmastis klkmdldfds tsinqihlvl fgfqdavnkv
      901 lrnhlirphw mfamdniirr avqaavtili pelrahfepa setegadkdc deaedsfqpa
      961 eqngaedpav tsgvstlssv vsheaqqqls lelarlkqet lrllgnlvqk ekeyqallqq
     1021 cleqktqelh slrlklkped fqwsaasfre eadpeltkwl kqqgadldai krfaeedytl
     1081 stvlnditkd dlrylqlrgg llcriwnail nhrqtagmts vqkvdalege gamgvnk
//
LOCUS       XP_053912103             406 aa            linear   VRT 09-MAR-2023
DEFINITION  pyruvate dehydrogenase E1 component subunit alpha, somatic form,
            mitochondrial isoform X1 [Cuculus canorus].
ACCESSION   XP_053912103
VERSION     XP_053912103.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056128.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..406
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..406
                     /product="pyruvate dehydrogenase E1 component subunit
                     alpha, somatic form, mitochondrial isoform X1"
                     /calculated_mol_wt=44871
     Region          74..385
                     /region_name="PDH_E1_alph_y"
                     /note="pyruvate dehydrogenase E1 component, alpha subunit;
                     TIGR03182"
                     /db_xref="CDD:274473"
     Site            order(104,156,181..182,213,215..218,221,225,229,244..247,
                     261,312,316)
                     /site_type="other"
                     /note="tetramer interface [polypeptide binding]"
                     /db_xref="CDD:238958"
     Site            order(134..135,181,183,211..214,241,243,308)
                     /site_type="other"
                     /note="TPP-binding site [chemical binding]"
                     /db_xref="CDD:238958"
     Site            order(176,178,180,185,188..189,192..193,195..196,199,
                     218..219,225..226,229)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:238958"
     Site            order(303..309,311..321,330..332)
                     /site_type="phosphorylation"
                     /note="phosphorylation loop region [posttranslational
                     modification]"
                     /db_xref="CDD:238958"
     CDS             1..406
                     /gene="PDHA1"
                     /coded_by="XM_054056128.1:125..1345"
                     /db_xref="GeneID:104063386"
ORIGIN      
        1 mrkmllaals rvlqgpagaa asaagrtgav seasrvmvas rnyadfasea tfeikkcdlh
       61 rleegpptta vmtreeglhy yktmqtirrm elksdqlykq kiirgfchly dgqeaccvgl
      121 evaikptdhv itayrahgft yargvpvrei laeltgrkgg cvkgkggsmh mytknfyggn
      181 givgaqvplg agialackyf gknevcltly gdgaanqgqi fetynmaalw klpcificen
      241 nrygmgtsve raaastdyyk rgdfipglrv dgmdvlcvre aakfaaehcr agkgpilmel
      301 qtyryhghsm sdpgisyrtr eeiqevrsks dpitllkdrm vntnlasiee lkeidvavrk
      361 eieeaaqfat tdpeppleel gnhiyynepp fevrgpnqwi ryksvs
//
LOCUS       XP_053912113             401 aa            linear   VRT 09-MAR-2023
DEFINITION  pyruvate dehydrogenase E1 component subunit alpha, somatic form,
            mitochondrial isoform X2 [Cuculus canorus].
ACCESSION   XP_053912113
VERSION     XP_053912113.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056138.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..401
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..401
                     /product="pyruvate dehydrogenase E1 component subunit
                     alpha, somatic form, mitochondrial isoform X2"
                     /calculated_mol_wt=44427
     Region          69..380
                     /region_name="PDH_E1_alph_y"
                     /note="pyruvate dehydrogenase E1 component, alpha subunit;
                     TIGR03182"
                     /db_xref="CDD:274473"
     Site            order(99,151,176..177,208,210..213,216,220,224,239..242,
                     256,307,311)
                     /site_type="other"
                     /note="tetramer interface [polypeptide binding]"
                     /db_xref="CDD:238958"
     Site            order(129..130,176,178,206..209,236,238,303)
                     /site_type="other"
                     /note="TPP-binding site [chemical binding]"
                     /db_xref="CDD:238958"
     Site            order(171,173,175,180,183..184,187..188,190..191,194,
                     213..214,220..221,224)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:238958"
     Site            order(298..304,306..316,325..327)
                     /site_type="phosphorylation"
                     /note="phosphorylation loop region [posttranslational
                     modification]"
                     /db_xref="CDD:238958"
     CDS             1..401
                     /gene="PDHA1"
                     /coded_by="XM_054056138.1:123..1328"
                     /db_xref="GeneID:104063386"
ORIGIN      
        1 mrkmllaals rvlqgpagaa asaagrtasr vmvasrnyad faseatfeik kcdlhrleeg
       61 ppttavmtre eglhyyktmq tirrmelksd qlykqkiirg fchlydgqea ccvglevaik
      121 ptdhvitayr ahgftyargv pvreilaelt grkggcvkgk ggsmhmytkn fyggngivga
      181 qvplgagial ackyfgknev cltlygdgaa nqgqifetyn maalwklpci ficennrygm
      241 gtsveraaas tdyykrgdfi pglrvdgmdv lcvreaakfa aehcragkgp ilmelqtyry
      301 hghsmsdpgi syrtreeiqe vrsksdpitl lkdrmvntnl asieelkeid vavrkeieea
      361 aqfattdpep pleelgnhiy yneppfevrg pnqwiryksv s
//
LOCUS       XP_053912120             424 aa            linear   VRT 09-MAR-2023
DEFINITION  rho GTPase-activating protein 8 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912120
VERSION     XP_053912120.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056145.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..424
                     /product="rho GTPase-activating protein 8 isoform X1"
                     /calculated_mol_wt=49104
     Region          48..186
                     /region_name="SEC14"
                     /note="Domain in homologues of a S. cerevisiae
                     phosphatidylinositol transfer protein (Sec14p);
                     smart00516"
                     /db_xref="CDD:214706"
     Region          222..413
                     /region_name="RhoGAP-p50rhoGAP"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain of p50RhoGAP-like proteins;
                     p50RhoGAP, also known as RhoGAP-1, contains a C-terminal
                     RhoGAP domain and an N-terminal Sec14 domain which binds
                     phosphatidylinositol 3,4; cd04404"
                     /db_xref="CDD:239869"
     Site            order(264,301,305,373,376..377,399)
                     /site_type="other"
                     /note="GTPase interaction site"
                     /db_xref="CDD:239869"
     Site            264
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239869"
     CDS             1..424
                     /gene="ARHGAP8"
                     /coded_by="XM_054056145.1:153..1427"
                     /db_xref="GeneID:104062815"
ORIGIN      
        1 mseidyekla eielqkdeae dtqseleety vsppledpel ninhpyydva rhgiiqlagd
       61 dnsgrkvitf sccrmppshq lnhtrlleyl kytldqyven dytvvyfhyg lkslnkpslk
      121 wlqtaykefd rkykknlkal yvvhptnfik ilwnifkpli shkfgkkity lnylsdlreh
      181 lkydqlnvpq evirhdenlr rkqkgklppv vkvppprppl ptqqfgvslq yikdknkgel
      241 ippvmketvs ylkskglqve glfrrsasiq tikdvqklyn qgksvnfddy hdihipavil
      301 ktflrelpqp lltfecydhv igitsvessl rvtrckqivq elpehnyvvl kylicflhmv
      361 sqeslynrmt asslacvfgl nliwpskgta slsalvplnl ftellidfya nifnsrtvpg
      421 eilp
//
LOCUS       XP_053912129             424 aa            linear   VRT 09-MAR-2023
DEFINITION  rho GTPase-activating protein 8 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912129
VERSION     XP_053912129.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056154.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..424
                     /product="rho GTPase-activating protein 8 isoform X1"
                     /calculated_mol_wt=49104
     Region          48..186
                     /region_name="SEC14"
                     /note="Domain in homologues of a S. cerevisiae
                     phosphatidylinositol transfer protein (Sec14p);
                     smart00516"
                     /db_xref="CDD:214706"
     Region          222..413
                     /region_name="RhoGAP-p50rhoGAP"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain of p50RhoGAP-like proteins;
                     p50RhoGAP, also known as RhoGAP-1, contains a C-terminal
                     RhoGAP domain and an N-terminal Sec14 domain which binds
                     phosphatidylinositol 3,4; cd04404"
                     /db_xref="CDD:239869"
     Site            order(264,301,305,373,376..377,399)
                     /site_type="other"
                     /note="GTPase interaction site"
                     /db_xref="CDD:239869"
     Site            264
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239869"
     CDS             1..424
                     /gene="ARHGAP8"
                     /coded_by="XM_054056154.1:1520..2794"
                     /db_xref="GeneID:104062815"
ORIGIN      
        1 mseidyekla eielqkdeae dtqseleety vsppledpel ninhpyydva rhgiiqlagd
       61 dnsgrkvitf sccrmppshq lnhtrlleyl kytldqyven dytvvyfhyg lkslnkpslk
      121 wlqtaykefd rkykknlkal yvvhptnfik ilwnifkpli shkfgkkity lnylsdlreh
      181 lkydqlnvpq evirhdenlr rkqkgklppv vkvppprppl ptqqfgvslq yikdknkgel
      241 ippvmketvs ylkskglqve glfrrsasiq tikdvqklyn qgksvnfddy hdihipavil
      301 ktflrelpqp lltfecydhv igitsvessl rvtrckqivq elpehnyvvl kylicflhmv
      361 sqeslynrmt asslacvfgl nliwpskgta slsalvplnl ftellidfya nifnsrtvpg
      421 eilp
//
LOCUS       XP_053912137             424 aa            linear   VRT 09-MAR-2023
DEFINITION  rho GTPase-activating protein 8 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912137
VERSION     XP_053912137.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056162.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..424
                     /product="rho GTPase-activating protein 8 isoform X1"
                     /calculated_mol_wt=49104
     Region          48..186
                     /region_name="SEC14"
                     /note="Domain in homologues of a S. cerevisiae
                     phosphatidylinositol transfer protein (Sec14p);
                     smart00516"
                     /db_xref="CDD:214706"
     Region          222..413
                     /region_name="RhoGAP-p50rhoGAP"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain of p50RhoGAP-like proteins;
                     p50RhoGAP, also known as RhoGAP-1, contains a C-terminal
                     RhoGAP domain and an N-terminal Sec14 domain which binds
                     phosphatidylinositol 3,4; cd04404"
                     /db_xref="CDD:239869"
     Site            order(264,301,305,373,376..377,399)
                     /site_type="other"
                     /note="GTPase interaction site"
                     /db_xref="CDD:239869"
     Site            264
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239869"
     CDS             1..424
                     /gene="ARHGAP8"
                     /coded_by="XM_054056162.1:242..1516"
                     /db_xref="GeneID:104062815"
ORIGIN      
        1 mseidyekla eielqkdeae dtqseleety vsppledpel ninhpyydva rhgiiqlagd
       61 dnsgrkvitf sccrmppshq lnhtrlleyl kytldqyven dytvvyfhyg lkslnkpslk
      121 wlqtaykefd rkykknlkal yvvhptnfik ilwnifkpli shkfgkkity lnylsdlreh
      181 lkydqlnvpq evirhdenlr rkqkgklppv vkvppprppl ptqqfgvslq yikdknkgel
      241 ippvmketvs ylkskglqve glfrrsasiq tikdvqklyn qgksvnfddy hdihipavil
      301 ktflrelpqp lltfecydhv igitsvessl rvtrckqivq elpehnyvvl kylicflhmv
      361 sqeslynrmt asslacvfgl nliwpskgta slsalvplnl ftellidfya nifnsrtvpg
      421 eilp
//
LOCUS       XP_053912145             424 aa            linear   VRT 09-MAR-2023
DEFINITION  rho GTPase-activating protein 8 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912145
VERSION     XP_053912145.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056170.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..424
                     /product="rho GTPase-activating protein 8 isoform X1"
                     /calculated_mol_wt=49104
     Region          48..186
                     /region_name="SEC14"
                     /note="Domain in homologues of a S. cerevisiae
                     phosphatidylinositol transfer protein (Sec14p);
                     smart00516"
                     /db_xref="CDD:214706"
     Region          222..413
                     /region_name="RhoGAP-p50rhoGAP"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain of p50RhoGAP-like proteins;
                     p50RhoGAP, also known as RhoGAP-1, contains a C-terminal
                     RhoGAP domain and an N-terminal Sec14 domain which binds
                     phosphatidylinositol 3,4; cd04404"
                     /db_xref="CDD:239869"
     Site            order(264,301,305,373,376..377,399)
                     /site_type="other"
                     /note="GTPase interaction site"
                     /db_xref="CDD:239869"
     Site            264
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239869"
     CDS             1..424
                     /gene="ARHGAP8"
                     /coded_by="XM_054056170.1:326..1600"
                     /db_xref="GeneID:104062815"
ORIGIN      
        1 mseidyekla eielqkdeae dtqseleety vsppledpel ninhpyydva rhgiiqlagd
       61 dnsgrkvitf sccrmppshq lnhtrlleyl kytldqyven dytvvyfhyg lkslnkpslk
      121 wlqtaykefd rkykknlkal yvvhptnfik ilwnifkpli shkfgkkity lnylsdlreh
      181 lkydqlnvpq evirhdenlr rkqkgklppv vkvppprppl ptqqfgvslq yikdknkgel
      241 ippvmketvs ylkskglqve glfrrsasiq tikdvqklyn qgksvnfddy hdihipavil
      301 ktflrelpqp lltfecydhv igitsvessl rvtrckqivq elpehnyvvl kylicflhmv
      361 sqeslynrmt asslacvfgl nliwpskgta slsalvplnl ftellidfya nifnsrtvpg
      421 eilp
//
LOCUS       XP_053912152             424 aa            linear   VRT 09-MAR-2023
DEFINITION  rho GTPase-activating protein 8 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912152
VERSION     XP_053912152.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056177.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..424
                     /product="rho GTPase-activating protein 8 isoform X1"
                     /calculated_mol_wt=49104
     Region          48..186
                     /region_name="SEC14"
                     /note="Domain in homologues of a S. cerevisiae
                     phosphatidylinositol transfer protein (Sec14p);
                     smart00516"
                     /db_xref="CDD:214706"
     Region          222..413
                     /region_name="RhoGAP-p50rhoGAP"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain of p50RhoGAP-like proteins;
                     p50RhoGAP, also known as RhoGAP-1, contains a C-terminal
                     RhoGAP domain and an N-terminal Sec14 domain which binds
                     phosphatidylinositol 3,4; cd04404"
                     /db_xref="CDD:239869"
     Site            order(264,301,305,373,376..377,399)
                     /site_type="other"
                     /note="GTPase interaction site"
                     /db_xref="CDD:239869"
     Site            264
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239869"
     CDS             1..424
                     /gene="ARHGAP8"
                     /coded_by="XM_054056177.1:415..1689"
                     /db_xref="GeneID:104062815"
ORIGIN      
        1 mseidyekla eielqkdeae dtqseleety vsppledpel ninhpyydva rhgiiqlagd
       61 dnsgrkvitf sccrmppshq lnhtrlleyl kytldqyven dytvvyfhyg lkslnkpslk
      121 wlqtaykefd rkykknlkal yvvhptnfik ilwnifkpli shkfgkkity lnylsdlreh
      181 lkydqlnvpq evirhdenlr rkqkgklppv vkvppprppl ptqqfgvslq yikdknkgel
      241 ippvmketvs ylkskglqve glfrrsasiq tikdvqklyn qgksvnfddy hdihipavil
      301 ktflrelpqp lltfecydhv igitsvessl rvtrckqivq elpehnyvvl kylicflhmv
      361 sqeslynrmt asslacvfgl nliwpskgta slsalvplnl ftellidfya nifnsrtvpg
      421 eilp
//
LOCUS       XP_053912161             424 aa            linear   VRT 09-MAR-2023
DEFINITION  rho GTPase-activating protein 8 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912161
VERSION     XP_053912161.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056186.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..424
                     /product="rho GTPase-activating protein 8 isoform X1"
                     /calculated_mol_wt=49104
     Region          48..186
                     /region_name="SEC14"
                     /note="Domain in homologues of a S. cerevisiae
                     phosphatidylinositol transfer protein (Sec14p);
                     smart00516"
                     /db_xref="CDD:214706"
     Region          222..413
                     /region_name="RhoGAP-p50rhoGAP"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain of p50RhoGAP-like proteins;
                     p50RhoGAP, also known as RhoGAP-1, contains a C-terminal
                     RhoGAP domain and an N-terminal Sec14 domain which binds
                     phosphatidylinositol 3,4; cd04404"
                     /db_xref="CDD:239869"
     Site            order(264,301,305,373,376..377,399)
                     /site_type="other"
                     /note="GTPase interaction site"
                     /db_xref="CDD:239869"
     Site            264
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239869"
     CDS             1..424
                     /gene="ARHGAP8"
                     /coded_by="XM_054056186.1:1609..2883"
                     /db_xref="GeneID:104062815"
ORIGIN      
        1 mseidyekla eielqkdeae dtqseleety vsppledpel ninhpyydva rhgiiqlagd
       61 dnsgrkvitf sccrmppshq lnhtrlleyl kytldqyven dytvvyfhyg lkslnkpslk
      121 wlqtaykefd rkykknlkal yvvhptnfik ilwnifkpli shkfgkkity lnylsdlreh
      181 lkydqlnvpq evirhdenlr rkqkgklppv vkvppprppl ptqqfgvslq yikdknkgel
      241 ippvmketvs ylkskglqve glfrrsasiq tikdvqklyn qgksvnfddy hdihipavil
      301 ktflrelpqp lltfecydhv igitsvessl rvtrckqivq elpehnyvvl kylicflhmv
      361 sqeslynrmt asslacvfgl nliwpskgta slsalvplnl ftellidfya nifnsrtvpg
      421 eilp
//
LOCUS       XP_053912169             391 aa            linear   VRT 09-MAR-2023
DEFINITION  rho GTPase-activating protein 8 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912169
VERSION     XP_053912169.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056194.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..391
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..391
                     /product="rho GTPase-activating protein 8 isoform X2"
                     /calculated_mol_wt=45131
     Region          48..169
                     /region_name="SEC14"
                     /note="Domain in homologues of a S. cerevisiae
                     phosphatidylinositol transfer protein (Sec14p);
                     smart00516"
                     /db_xref="CDD:214706"
     Region          189..380
                     /region_name="RhoGAP-p50rhoGAP"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain of p50RhoGAP-like proteins;
                     p50RhoGAP, also known as RhoGAP-1, contains a C-terminal
                     RhoGAP domain and an N-terminal Sec14 domain which binds
                     phosphatidylinositol 3,4; cd04404"
                     /db_xref="CDD:239869"
     Site            order(231,268,272,340,343..344,366)
                     /site_type="other"
                     /note="GTPase interaction site"
                     /db_xref="CDD:239869"
     Site            231
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239869"
     CDS             1..391
                     /gene="ARHGAP8"
                     /coded_by="XM_054056194.1:153..1328"
                     /db_xref="GeneID:104062815"
ORIGIN      
        1 mseidyekla eielqkdeae dtqseleety vsppledpel ninhpyydva rhgiiqlagd
       61 dnsgrkvitf sccrmppshq lnhtrlleyl kytldqyven dytvvyfhyg lkslnkpslk
      121 wlqtaykefd rkykknlkal yvvhptnfik ilwnifkpli rhdenlrrkq kgklppvvkv
      181 ppprpplptq qfgvslqyik dknkgelipp vmketvsylk skglqveglf rrsasiqtik
      241 dvqklynqgk svnfddyhdi hipavilktf lrelpqpllt fecydhvigi tsvesslrvt
      301 rckqivqelp ehnyvvlkyl icflhmvsqe slynrmtass lacvfglnli wpskgtasls
      361 alvplnlfte llidfyanif nsrtvpgeil p
//
LOCUS       XP_053912173             350 aa            linear   VRT 09-MAR-2023
DEFINITION  rho GTPase-activating protein 8 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912173
VERSION     XP_053912173.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056198.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..350
                     /product="rho GTPase-activating protein 8 isoform X3"
                     /calculated_mol_wt=40649
     Region          1..112
                     /region_name="CRAL_TRIO_2"
                     /note="Divergent CRAL/TRIO domain; pfam13716"
                     /db_xref="CDD:463965"
     Region          148..339
                     /region_name="RhoGAP-p50rhoGAP"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain of p50RhoGAP-like proteins;
                     p50RhoGAP, also known as RhoGAP-1, contains a C-terminal
                     RhoGAP domain and an N-terminal Sec14 domain which binds
                     phosphatidylinositol 3,4; cd04404"
                     /db_xref="CDD:239869"
     Site            order(190,227,231,299,302..303,325)
                     /site_type="other"
                     /note="GTPase interaction site"
                     /db_xref="CDD:239869"
     Site            190
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239869"
     CDS             1..350
                     /gene="ARHGAP8"
                     /coded_by="XM_054056198.1:194..1246"
                     /db_xref="GeneID:104062815"
ORIGIN      
        1 mppshqlnht rlleylkytl dqyvendytv vyfhyglksl nkpslkwlqt aykefdrkyk
       61 knlkalyvvh ptnfikilwn ifkplishkf gkkitylnyl sdlrehlkyd qlnvpqevir
      121 hdenlrrkqk gklppvvkvp pprpplptqq fgvslqyikd knkgelippv mketvsylks
      181 kglqveglfr rsasiqtikd vqklynqgks vnfddyhdih ipavilktfl relpqplltf
      241 ecydhvigit svesslrvtr ckqivqelpe hnyvvlkyli cflhmvsqes lynrmtassl
      301 acvfglnliw pskgtaslsa lvplnlftel lidfyanifn srtvpgeilp
//
LOCUS       XP_053912186             413 aa            linear   VRT 09-MAR-2023
DEFINITION  proline-rich protein 5 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912186
VERSION     XP_053912186.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056211.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..413
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..413
                     /product="proline-rich protein 5 isoform X1"
                     /calculated_mol_wt=46210
     Region          41..159
                     /region_name="HbrB"
                     /note="HbrB-like; pfam08539"
                     /db_xref="CDD:430059"
     CDS             1..413
                     /gene="PRR5"
                     /coded_by="XM_054056211.1:486..1727"
                     /db_xref="GeneID:104062814"
ORIGIN      
        1 mrtlrrlkfm sspslsdlgk reqaalderg tqqrracsna twnsihngvi avfqrkglpd
       61 helynlnegv rqllktelgs ffteylqnql ltkgmvilrd kirfyegqkl ldtlaetwdf
      121 ffsdvlpmlq aifypvqgke psvrqlallh frniitlnik ledalsrsra rvppsiiqml
      181 lilqgvhesk gvtedylkle sliqkvvspy lgtyglyssd gpfthsscil ekrffrrsks
      241 gdilaknpvv rsksynnpll tpvaeyeteg maangtgirr hsvsemtscl elqgysnltt
      301 imdngskssm tttksslsgd qerpstgsvq csgklstveq qkglfhsmdn phrsfelerd
      361 pslipvpsss penivdqile sidsdsegif idfgrgcsns saynvdvnrq sim
//
LOCUS       XP_053912190             413 aa            linear   VRT 09-MAR-2023
DEFINITION  proline-rich protein 5 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912190
VERSION     XP_053912190.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056215.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..413
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..413
                     /product="proline-rich protein 5 isoform X1"
                     /calculated_mol_wt=46210
     Region          41..159
                     /region_name="HbrB"
                     /note="HbrB-like; pfam08539"
                     /db_xref="CDD:430059"
     CDS             1..413
                     /gene="PRR5"
                     /coded_by="XM_054056215.1:405..1646"
                     /db_xref="GeneID:104062814"
ORIGIN      
        1 mrtlrrlkfm sspslsdlgk reqaalderg tqqrracsna twnsihngvi avfqrkglpd
       61 helynlnegv rqllktelgs ffteylqnql ltkgmvilrd kirfyegqkl ldtlaetwdf
      121 ffsdvlpmlq aifypvqgke psvrqlallh frniitlnik ledalsrsra rvppsiiqml
      181 lilqgvhesk gvtedylkle sliqkvvspy lgtyglyssd gpfthsscil ekrffrrsks
      241 gdilaknpvv rsksynnpll tpvaeyeteg maangtgirr hsvsemtscl elqgysnltt
      301 imdngskssm tttksslsgd qerpstgsvq csgklstveq qkglfhsmdn phrsfelerd
      361 pslipvpsss penivdqile sidsdsegif idfgrgcsns saynvdvnrq sim
//
LOCUS       XP_053912198             404 aa            linear   VRT 09-MAR-2023
DEFINITION  proline-rich protein 5 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912198
VERSION     XP_053912198.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056223.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..404
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..404
                     /product="proline-rich protein 5 isoform X2"
                     /calculated_mol_wt=45007
     Region          32..150
                     /region_name="HbrB"
                     /note="HbrB-like; pfam08539"
                     /db_xref="CDD:430059"
     CDS             1..404
                     /gene="PRR5"
                     /coded_by="XM_054056223.1:361..1575"
                     /db_xref="GeneID:104062814"
ORIGIN      
        1 msspslsdlg kreqaalder gtqqrracsn atwnsihngv iavfqrkglp dhelynlneg
       61 vrqllktelg sffteylqnq lltkgmvilr dkirfyegqk lldtlaetwd fffsdvlpml
      121 qaifypvqgk epsvrqlall hfrniitlni kledalsrsr arvppsiiqm llilqgvhes
      181 kgvtedylkl esliqkvvsp ylgtyglyss dgpfthssci lekrffrrsk sgdilaknpv
      241 vrsksynnpl ltpvaeyete gmaangtgir rhsvsemtsc lelqgysnlt timdngskss
      301 mtttksslsg dqerpstgsv qcsgklstve qqkglfhsmd nphrsfeler dpslipvpss
      361 spenivdqil esidsdsegi fidfgrgcsn ssaynvdvnr qsim
//
LOCUS       XP_053912206             404 aa            linear   VRT 09-MAR-2023
DEFINITION  proline-rich protein 5 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912206
VERSION     XP_053912206.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056231.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..404
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..404
                     /product="proline-rich protein 5 isoform X2"
                     /calculated_mol_wt=45007
     Region          32..150
                     /region_name="HbrB"
                     /note="HbrB-like; pfam08539"
                     /db_xref="CDD:430059"
     CDS             1..404
                     /gene="PRR5"
                     /coded_by="XM_054056231.1:201..1415"
                     /db_xref="GeneID:104062814"
ORIGIN      
        1 msspslsdlg kreqaalder gtqqrracsn atwnsihngv iavfqrkglp dhelynlneg
       61 vrqllktelg sffteylqnq lltkgmvilr dkirfyegqk lldtlaetwd fffsdvlpml
      121 qaifypvqgk epsvrqlall hfrniitlni kledalsrsr arvppsiiqm llilqgvhes
      181 kgvtedylkl esliqkvvsp ylgtyglyss dgpfthssci lekrffrrsk sgdilaknpv
      241 vrsksynnpl ltpvaeyete gmaangtgir rhsvsemtsc lelqgysnlt timdngskss
      301 mtttksslsg dqerpstgsv qcsgklstve qqkglfhsmd nphrsfeler dpslipvpss
      361 spenivdqil esidsdsegi fidfgrgcsn ssaynvdvnr qsim
//
LOCUS       XP_053912215             319 aa            linear   VRT 09-MAR-2023
DEFINITION  proline-rich protein 5 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912215
VERSION     XP_053912215.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056240.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..319
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..319
                     /product="proline-rich protein 5 isoform X3"
                     /calculated_mol_wt=35447
     Region          <1..65
                     /region_name="HbrB"
                     /note="HbrB-like; pfam08539"
                     /db_xref="CDD:430059"
     CDS             1..319
                     /gene="PRR5"
                     /coded_by="XM_054056240.1:293..1252"
                     /db_xref="GeneID:104062814"
ORIGIN      
        1 mvilrdkirf yegqklldtl aetwdfffsd vlpmlqaify pvqgkepsvr qlallhfrni
       61 itlnikleda lsrsrarvpp siiqmllilq gvheskgvte dylklesliq kvvspylgty
      121 glyssdgpft hsscilekrf frrsksgdil aknpvvrsks ynnplltpva eyetegmaan
      181 gtgirrhsvs emtsclelqg ysnlttimdn gskssmtttk sslsgdqerp stgsvqcsgk
      241 lstveqqkgl fhsmdnphrs felerdpsli pvpssspeni vdqilesids dsegifidfg
      301 rgcsnssayn vdvnrqsim
//
LOCUS       XP_009556261             800 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium/hydrogen exchanger 2 [Cuculus canorus].
ACCESSION   XP_009556261
VERSION     XP_009556261.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557966.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556261.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..800
                     /product="sodium/hydrogen exchanger 2"
                     /calculated_mol_wt=90046
     Region          62..618
                     /region_name="b_cpa1"
                     /note="sodium/hydrogen exchanger 3; TIGR00840"
                     /db_xref="CDD:273294"
     CDS             1..800
                     /gene="SLC9A2"
                     /coded_by="XM_009557966.2:86..2488"
                     /db_xref="GeneID:104056688"
ORIGIN      
        1 mggtqlllpa alglavlaaa aaearatsea qlpgasamgt gappspsgta feetrlhvft
       61 ldyphvqipf eitlwillas lakigfhlyh klpsivpesc llilvglllg giifgadeks
      121 ppvmnsdvff lyllppivld agyfmptrlf fenfgtifwy avvgtlwnai gigislygic
      181 qisafgltdi tllqnllfgs lisavdpvav lavfenihvn eqlyilvfge sllndaitvv
      241 lynlfksfcq mrtikvidif agianffivg iggvligill gfiaafttrf thkirviepl
      301 fvflysylsy itaemfhlsg imaitacamt mnkyveenvs qksyttikyf mkmlssvset
      361 lififmgvst vgknhewnwa fvsftllfcl iwralgvfvl tqiinvfrti pltfkdqfii
      421 sygglrgaic fslvfllppa vfprkklfit avivvifftv fiqgitirpl vefldvkrsn
      481 kkqpavseei ynrffdhvkt giedvcghwg hnfwrdkfkk fdnkylrrll irenqpkssi
      541 vslykkleik haiemaesgm iskvpsaasl seyhegkikp lsptemenmr eiltknlyqi
      601 rhrtmsynrh slaadasekq akeilirrrh slreslrktn slsrerpaaa ntkrflslpk
      661 ntklpeklrv rnktssrvgd ssdsemdaat tvlnlrprag kilreqrlrq qrplpefrve
      721 wknevdgsqd grgeqlepti lpqppigfrq plltrprfgt lsredltadh gsarpmpppr
      781 lvrqasqger qrnkpenqpy
//
LOCUS       XP_009556199             450 aa            linear   VRT 09-MAR-2023
DEFINITION  major facilitator superfamily domain-containing protein 9 [Cuculus
            canorus].
ACCESSION   XP_009556199
VERSION     XP_009556199.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557904.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556199.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..450
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..450
                     /product="major facilitator superfamily domain-containing
                     protein 9"
                     /calculated_mol_wt=48442
     Region          24..432
                     /region_name="MFS_MFSD9"
                     /note="Major facilitator superfamily domain-containing
                     protein 9; cd17390"
                     /db_xref="CDD:340948"
     Site            order(31..32,35..36,39,71,121..122,124..126,129,148,
                     151..152,155,268,271..272,275..277,280,308,312,363..364,
                     368,372,388,391..392,395..396,399)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:340948"
     CDS             1..450
                     /gene="MFSD9"
                     /coded_by="XM_009557904.2:55..1407"
                     /db_xref="GeneID:104056637"
ORIGIN      
        1 meeeeeedgg rkaagncdrf vrclyavgfl dlfgvsmvvp lmnlhikslg ashtvagiig
       61 slygvmqlfs stfvgcwsdi vgrrysllac illsalgyfl lgtsttvflf aisrvpvgif
      121 khtlsiskal lsdlvserdr plvmgrfnaa sgvgfilgpv vggylaeled gfyhtsfica
      181 sifllnaglv wmlpwseena gsrehqqgnk rtgsfsakad ndlqlksgsn gamasdslfr
      241 spwiqvttvl krikeiacsn lwdiflvrll msvaillyys nfslaleerf gvkplfagyl
      301 lsyssalgvl agcllgpitr lyqhntyril lhsstltctl iflyasalsi wmvilsstfl
      361 afsttigrtc iidleltigg neasgtllgv gqsvtsvgri iapllsgiaq efspcgppgl
      421 gvglalvail imngnkqkyc shgnvklkne
//
LOCUS       XP_053912264             233 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 182 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912264
VERSION     XP_053912264.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056289.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..233
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..233
                     /product="transmembrane protein 182 isoform X1"
                     /calculated_mol_wt=26058
     Region          15..223
                     /region_name="Claudin_2"
                     /note="PMP-22/EMP/MP20/Claudin tight junction; pfam13903"
                     /db_xref="CDD:372799"
     CDS             1..233
                     /gene="TMEM182"
                     /coded_by="XM_054056289.1:197..898"
                     /db_xref="GeneID:104056636"
ORIGIN      
        1 mklnvgiffg gffaalgvll fllafgtdyw llateigrcs kapedvggeq atfhhegffw
       61 rcwfsgnvge nnssmwnfwy tnqspsknct haylspfpli rdehnstsyd saiiyrgfwt
      121 vlmllgvltv vmasfiiica apfashilyk agggfliiag vlfslvvvmy viwvqamadl
      181 enytnmkrmd cpdftvyvry gwsfmvapig vffallagml fllvgraiyl hsd
//
LOCUS       XP_053912269             206 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 182 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912269
VERSION     XP_053912269.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056294.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..206
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..206
                     /product="transmembrane protein 182 isoform X2"
                     /calculated_mol_wt=23090
     Region          22..196
                     /region_name="Claudin_2"
                     /note="PMP-22/EMP/MP20/Claudin tight junction; pfam13903"
                     /db_xref="CDD:372799"
     CDS             1..206
                     /gene="TMEM182"
                     /coded_by="XM_054056294.1:330..950"
                     /db_xref="GeneID:104056636"
ORIGIN      
        1 magtplkimq llssvktarg geqatfhheg ffwrcwfsgn vgennssmwn fwytnqspsk
       61 ncthaylspf plirdehnst sydsaiiyrg fwtvlmllgv ltvvmasfii icaapfashi
      121 lykagggfli iagvlfslvv vmyviwvqam adlenytnmk rmdcpdftvy vrygwsfmva
      181 pigvffalla gmlfllvgra iylhsd
//
LOCUS       XP_053912283            1848 aa            linear   VRT 09-MAR-2023
DEFINITION  retroelement silencing factor 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912283
VERSION     XP_053912283.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056308.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1848
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1848
                     /product="retroelement silencing factor 1 isoform X1"
                     /calculated_mol_wt=204212
     Region          678..1844
                     /region_name="DUF4617"
                     /note="Domain of unknown function (DUF4617); pfam15395"
                     /db_xref="CDD:464702"
     CDS             1..1848
                     /gene="RESF1"
                     /coded_by="XM_054056308.1:407..5953"
                     /db_xref="GeneID:104056348"
ORIGIN      
        1 mdwnvrplqn adkrnlqsee acytqlfsna hgfpqanass snnactyagn nqtvylptsn
       61 iafplvnaeg frtsdqtlpg apvagnesvt skyslnrpsc vpiapkppnh ttrlqaemtq
      121 twtnsngyiy syrrklpvla sqvsagnnvr nvvrqsqhvt tntytvqpqi lqhnsvrttl
      181 yqsnihpqns saslapsgqh vqnqmylpns qlivfnsqnq ntaanvqllq yqqsqmgsea
      241 psrfsappll ptscdsrata qssigvlqav qnvpggytfs qqscptdpkn asglnsvqqh
      301 cqklqsgefg qsignvciss gnvtasqpfn emcvpspgis kelysilqem etlssgaaas
      361 kvshhtsvqe sqtsslsgpv nsemsssgad griitkdrla weaerllsik krcallervh
      421 cykrkllaas qhdkstlppp tscqgtltns lmpnynvpps psktmrteip vvnaspeetn
      481 niniasadnr glevtqsnsq meqgspssss apipsqsnlp aqintpestp ileqkdvcas
      541 assqrvgtsl nnascfsqvd ssnkiastnv pinpknssfl qfvlsstnvl kektagatad
      601 kiltsllcse ktltdtsvss rssikdtsek nteslkgeqv fmvntnspvs ettksgeaqk
      661 ktpftenats kqsnysysme eltaclglwr khpsesasvq nsqsneglta nqispysqnt
      721 knreqnnvld stnegilpvt asagqkldts scnliksfel qvavvsplvl seqktqneea
      781 dkylmsagkt ypvtdsgstc nlqeegkngl svvntdkgtt etlwssphdc vlvskvdsql
      841 pqtdladgkr ivkigmsand scdenqrkvs qsaqdarenp qlglqnkpsi pelgvnfssk
      901 ifqegvtdnk dkqgvletgn astavldkqm fcissvcslv egntfynpqi asifksapet
      961 halsgtlseg napdtrqkeq rldlcknels skthqskssl qkmeeslscm skagrildct
     1021 ttshlekess gnplktists ekkmsfnasp khpendleil asinqelaqn sldfsidvta
     1081 eangltvprd ssmqnyissk ntekemnlfe vepikclnsq lselvkefpy giegadmltk
     1141 epvqcdsaae rmennlqkei qicdkkshlk npvdqieitv ltsaqmqelv pehnqssssd
     1201 ssrvasqqlv kasaednleg siqpsqslce kkktretssp mekkkpcspr twisnlpqsp
     1261 gkystsasek sdqiskaent gsaetqenns kcdaimknnc pvgnlrisek ipnsdnknkk
     1321 dicrntsvmn ekanvtvhne ykllttqkdk ieplnssene dfdksrrnsw neepevvgea
     1381 pllrrefhsd kkehqtvsee lsekadhtda dsmtksskkk drvskiesls kdksqtglav
     1441 ksetdihkft esetveikhd eisqgqkmkt ceensaeeqn crkqkeivgq dvemsikeka
     1501 klsaeikhkk vnsyradaik fpnfgtvdlk srnhknfqhk svkvhpsper sykrkrkenm
     1561 igkrdskktk veeerlkqse aknskqlshn cmistekakk lngesgrklk sslaefavlk
     1621 lqrkgaqpst isknyfsnke rcldsqskek ysekvfsdkn llylnrrnnr lklhlqkepk
     1681 khylnrvafk rmaqeriylt kletspvrpv whrktkvsqn spnvkrhisv seaeksckpe
     1741 llefklcpei lfrdpatdee sltaknslek ekaivagvks kkedwlkydt vkqknmkenf
     1801 taedsipldt aiqildgdge alhipvkdsk emfqtyrkiy mekkmqkp
//
LOCUS       XP_053912289            1848 aa            linear   VRT 09-MAR-2023
DEFINITION  retroelement silencing factor 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912289
VERSION     XP_053912289.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056314.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1848
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1848
                     /product="retroelement silencing factor 1 isoform X1"
                     /calculated_mol_wt=204212
     Region          678..1844
                     /region_name="DUF4617"
                     /note="Domain of unknown function (DUF4617); pfam15395"
                     /db_xref="CDD:464702"
     CDS             1..1848
                     /gene="RESF1"
                     /coded_by="XM_054056314.1:1846..7392"
                     /db_xref="GeneID:104056348"
ORIGIN      
        1 mdwnvrplqn adkrnlqsee acytqlfsna hgfpqanass snnactyagn nqtvylptsn
       61 iafplvnaeg frtsdqtlpg apvagnesvt skyslnrpsc vpiapkppnh ttrlqaemtq
      121 twtnsngyiy syrrklpvla sqvsagnnvr nvvrqsqhvt tntytvqpqi lqhnsvrttl
      181 yqsnihpqns saslapsgqh vqnqmylpns qlivfnsqnq ntaanvqllq yqqsqmgsea
      241 psrfsappll ptscdsrata qssigvlqav qnvpggytfs qqscptdpkn asglnsvqqh
      301 cqklqsgefg qsignvciss gnvtasqpfn emcvpspgis kelysilqem etlssgaaas
      361 kvshhtsvqe sqtsslsgpv nsemsssgad griitkdrla weaerllsik krcallervh
      421 cykrkllaas qhdkstlppp tscqgtltns lmpnynvpps psktmrteip vvnaspeetn
      481 niniasadnr glevtqsnsq meqgspssss apipsqsnlp aqintpestp ileqkdvcas
      541 assqrvgtsl nnascfsqvd ssnkiastnv pinpknssfl qfvlsstnvl kektagatad
      601 kiltsllcse ktltdtsvss rssikdtsek nteslkgeqv fmvntnspvs ettksgeaqk
      661 ktpftenats kqsnysysme eltaclglwr khpsesasvq nsqsneglta nqispysqnt
      721 knreqnnvld stnegilpvt asagqkldts scnliksfel qvavvsplvl seqktqneea
      781 dkylmsagkt ypvtdsgstc nlqeegkngl svvntdkgtt etlwssphdc vlvskvdsql
      841 pqtdladgkr ivkigmsand scdenqrkvs qsaqdarenp qlglqnkpsi pelgvnfssk
      901 ifqegvtdnk dkqgvletgn astavldkqm fcissvcslv egntfynpqi asifksapet
      961 halsgtlseg napdtrqkeq rldlcknels skthqskssl qkmeeslscm skagrildct
     1021 ttshlekess gnplktists ekkmsfnasp khpendleil asinqelaqn sldfsidvta
     1081 eangltvprd ssmqnyissk ntekemnlfe vepikclnsq lselvkefpy giegadmltk
     1141 epvqcdsaae rmennlqkei qicdkkshlk npvdqieitv ltsaqmqelv pehnqssssd
     1201 ssrvasqqlv kasaednleg siqpsqslce kkktretssp mekkkpcspr twisnlpqsp
     1261 gkystsasek sdqiskaent gsaetqenns kcdaimknnc pvgnlrisek ipnsdnknkk
     1321 dicrntsvmn ekanvtvhne ykllttqkdk ieplnssene dfdksrrnsw neepevvgea
     1381 pllrrefhsd kkehqtvsee lsekadhtda dsmtksskkk drvskiesls kdksqtglav
     1441 ksetdihkft esetveikhd eisqgqkmkt ceensaeeqn crkqkeivgq dvemsikeka
     1501 klsaeikhkk vnsyradaik fpnfgtvdlk srnhknfqhk svkvhpsper sykrkrkenm
     1561 igkrdskktk veeerlkqse aknskqlshn cmistekakk lngesgrklk sslaefavlk
     1621 lqrkgaqpst isknyfsnke rcldsqskek ysekvfsdkn llylnrrnnr lklhlqkepk
     1681 khylnrvafk rmaqeriylt kletspvrpv whrktkvsqn spnvkrhisv seaeksckpe
     1741 llefklcpei lfrdpatdee sltaknslek ekaivagvks kkedwlkydt vkqknmkenf
     1801 taedsipldt aiqildgdge alhipvkdsk emfqtyrkiy mekkmqkp
//
LOCUS       XP_053912295            1848 aa            linear   VRT 09-MAR-2023
DEFINITION  retroelement silencing factor 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912295
VERSION     XP_053912295.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056320.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1848
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1848
                     /product="retroelement silencing factor 1 isoform X1"
                     /calculated_mol_wt=204212
     Region          678..1844
                     /region_name="DUF4617"
                     /note="Domain of unknown function (DUF4617); pfam15395"
                     /db_xref="CDD:464702"
     CDS             1..1848
                     /gene="RESF1"
                     /coded_by="XM_054056320.1:463..6009"
                     /db_xref="GeneID:104056348"
ORIGIN      
        1 mdwnvrplqn adkrnlqsee acytqlfsna hgfpqanass snnactyagn nqtvylptsn
       61 iafplvnaeg frtsdqtlpg apvagnesvt skyslnrpsc vpiapkppnh ttrlqaemtq
      121 twtnsngyiy syrrklpvla sqvsagnnvr nvvrqsqhvt tntytvqpqi lqhnsvrttl
      181 yqsnihpqns saslapsgqh vqnqmylpns qlivfnsqnq ntaanvqllq yqqsqmgsea
      241 psrfsappll ptscdsrata qssigvlqav qnvpggytfs qqscptdpkn asglnsvqqh
      301 cqklqsgefg qsignvciss gnvtasqpfn emcvpspgis kelysilqem etlssgaaas
      361 kvshhtsvqe sqtsslsgpv nsemsssgad griitkdrla weaerllsik krcallervh
      421 cykrkllaas qhdkstlppp tscqgtltns lmpnynvpps psktmrteip vvnaspeetn
      481 niniasadnr glevtqsnsq meqgspssss apipsqsnlp aqintpestp ileqkdvcas
      541 assqrvgtsl nnascfsqvd ssnkiastnv pinpknssfl qfvlsstnvl kektagatad
      601 kiltsllcse ktltdtsvss rssikdtsek nteslkgeqv fmvntnspvs ettksgeaqk
      661 ktpftenats kqsnysysme eltaclglwr khpsesasvq nsqsneglta nqispysqnt
      721 knreqnnvld stnegilpvt asagqkldts scnliksfel qvavvsplvl seqktqneea
      781 dkylmsagkt ypvtdsgstc nlqeegkngl svvntdkgtt etlwssphdc vlvskvdsql
      841 pqtdladgkr ivkigmsand scdenqrkvs qsaqdarenp qlglqnkpsi pelgvnfssk
      901 ifqegvtdnk dkqgvletgn astavldkqm fcissvcslv egntfynpqi asifksapet
      961 halsgtlseg napdtrqkeq rldlcknels skthqskssl qkmeeslscm skagrildct
     1021 ttshlekess gnplktists ekkmsfnasp khpendleil asinqelaqn sldfsidvta
     1081 eangltvprd ssmqnyissk ntekemnlfe vepikclnsq lselvkefpy giegadmltk
     1141 epvqcdsaae rmennlqkei qicdkkshlk npvdqieitv ltsaqmqelv pehnqssssd
     1201 ssrvasqqlv kasaednleg siqpsqslce kkktretssp mekkkpcspr twisnlpqsp
     1261 gkystsasek sdqiskaent gsaetqenns kcdaimknnc pvgnlrisek ipnsdnknkk
     1321 dicrntsvmn ekanvtvhne ykllttqkdk ieplnssene dfdksrrnsw neepevvgea
     1381 pllrrefhsd kkehqtvsee lsekadhtda dsmtksskkk drvskiesls kdksqtglav
     1441 ksetdihkft esetveikhd eisqgqkmkt ceensaeeqn crkqkeivgq dvemsikeka
     1501 klsaeikhkk vnsyradaik fpnfgtvdlk srnhknfqhk svkvhpsper sykrkrkenm
     1561 igkrdskktk veeerlkqse aknskqlshn cmistekakk lngesgrklk sslaefavlk
     1621 lqrkgaqpst isknyfsnke rcldsqskek ysekvfsdkn llylnrrnnr lklhlqkepk
     1681 khylnrvafk rmaqeriylt kletspvrpv whrktkvsqn spnvkrhisv seaeksckpe
     1741 llefklcpei lfrdpatdee sltaknslek ekaivagvks kkedwlkydt vkqknmkenf
     1801 taedsipldt aiqildgdge alhipvkdsk emfqtyrkiy mekkmqkp
//
LOCUS       XP_053912304            1825 aa            linear   VRT 09-MAR-2023
DEFINITION  retroelement silencing factor 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912304
VERSION     XP_053912304.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056329.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1825
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1825
                     /product="retroelement silencing factor 1 isoform X2"
                     /calculated_mol_wt=201617
     Region          678..1809
                     /region_name="DUF4617"
                     /note="Domain of unknown function (DUF4617); pfam15395"
                     /db_xref="CDD:464702"
     CDS             1..1825
                     /gene="RESF1"
                     /coded_by="XM_054056329.1:408..5885"
                     /db_xref="GeneID:104056348"
ORIGIN      
        1 mdwnvrplqn adkrnlqsee acytqlfsna hgfpqanass snnactyagn nqtvylptsn
       61 iafplvnaeg frtsdqtlpg apvagnesvt skyslnrpsc vpiapkppnh ttrlqaemtq
      121 twtnsngyiy syrrklpvla sqvsagnnvr nvvrqsqhvt tntytvqpqi lqhnsvrttl
      181 yqsnihpqns saslapsgqh vqnqmylpns qlivfnsqnq ntaanvqllq yqqsqmgsea
      241 psrfsappll ptscdsrata qssigvlqav qnvpggytfs qqscptdpkn asglnsvqqh
      301 cqklqsgefg qsignvciss gnvtasqpfn emcvpspgis kelysilqem etlssgaaas
      361 kvshhtsvqe sqtsslsgpv nsemsssgad griitkdrla weaerllsik krcallervh
      421 cykrkllaas qhdkstlppp tscqgtltns lmpnynvpps psktmrteip vvnaspeetn
      481 niniasadnr glevtqsnsq meqgspssss apipsqsnlp aqintpestp ileqkdvcas
      541 assqrvgtsl nnascfsqvd ssnkiastnv pinpknssfl qfvlsstnvl kektagatad
      601 kiltsllcse ktltdtsvss rssikdtsek nteslkgeqv fmvntnspvs ettksgeaqk
      661 ktpftenats kqsnysysme eltaclglwr khpsesasvq nsqsneglta nqispysqnt
      721 knreqnnvld stnegilpvt asagqkldts scnliksfel qvavvsplvl seqktqneea
      781 dkylmsagkt ypvtdsgstc nlqeegkngl svvntdkgtt etlwssphdc vlvskvdsql
      841 pqtdladgkr ivkigmsand scdenqrkvs qsaqdarenp qlglqnkpsi pelgvnfssk
      901 ifqegvtdnk dkqgvletgn astavldkqm fcissvcslv egntfynpqi asifksapet
      961 halsgtlseg napdtrqkeq rldlcknels skthqskssl qkmeeslscm skagrildct
     1021 ttshlekess gnplktists ekkmsfnasp khpendleil asinqelaqn sldfsidvta
     1081 eangltvprd ssmqnyissk ntekemnlfe vepikclnsq lselvkefpy giegadmltk
     1141 epvqcdsaae rmennlqkei qicdkkshlk npvdqieitv ltsaqmqelv pehnqssssd
     1201 ssrvasqqlv kasaednleg siqpsqslce kkktretssp mekkkpcspr twisnlpqsp
     1261 gkystsasek sdqiskaent gsaetqenns kcdaimknnc pvgnlrisek ipnsdnknkk
     1321 dicrntsvmn ekanvtvhne ykllttqkdk ieplnssene dfdksrrnsw neepevvgea
     1381 pllrrefhsd kkehqtvsee lsekadhtda dsmtksskkk drvskiesls kdksqtglav
     1441 ksetdihkft esetveikhd eisqgqkmkt ceensaeeqn crkqkeivgq dvemsikeka
     1501 klsaeikhkk vnsyradaik fpnfgtvdlk srnhknfqhk svkvhpsper sykrkrkenm
     1561 igkrdskktk veeerlkqse aknskqlshn cmistekakk lngesgrklk sslaefavlk
     1621 lqrkgaqpst isknyfsnke rcldsqskek ysekvfsdkn llylnrrnnr lklhlqkepk
     1681 khylnrvafk rmaqeriylt kletspvrpv whrktkvsqn spnvkrhisv seaeksckpe
     1741 llefklcpei lfrdpatdee sltaknslek ekaivagvks kkedwlkydt vkqknmkenf
     1801 tdscseenty keqhygykey pqgta
//
LOCUS       XP_053912315            1823 aa            linear   VRT 09-MAR-2023
DEFINITION  retroelement silencing factor 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912315
VERSION     XP_053912315.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056340.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1823
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1823
                     /product="retroelement silencing factor 1 isoform X3"
                     /calculated_mol_wt=201185
     Region          678..1819
                     /region_name="DUF4617"
                     /note="Domain of unknown function (DUF4617); pfam15395"
                     /db_xref="CDD:464702"
     CDS             1..1823
                     /gene="RESF1"
                     /coded_by="XM_054056340.1:407..5878"
                     /db_xref="GeneID:104056348"
ORIGIN      
        1 mdwnvrplqn adkrnlqsee acytqlfsna hgfpqanass snnactyagn nqtvylptsn
       61 iafplvnaeg frtsdqtlpg apvagnesvt skyslnrpsc vpiapkppnh ttrlqaemtq
      121 twtnsngyiy syrrklpvla sqvsagnnvr nvvrqsqhvt tntytvqpqi lqhnsvrttl
      181 yqsnihpqns saslapsgqh vqnqmylpns qlivfnsqnq ntaanvqllq yqqsqmgsea
      241 psrfsappll ptscdsrata qssigvlqav qnvpggytfs qqscptdpkn asglnsvqqh
      301 cqklqsgefg qsignvciss gnvtasqpfn emcvpspgis kelysilqem etlssgaaas
      361 kvshhtsvqe sqtsslsgpv nsemsssgad griitkdrla weaerllsik krcallervh
      421 cykrkllaas qhdkstlppp tscqgtltns lmpnynvpps psktmrteip vvnaspeetn
      481 niniasadnr glevtqsnsq meqgspssss apipsqsnlp aqintpestp ileqkdvcas
      541 assqrvgtsl nnascfsqvd ssnkiastnv pinpknssfl qfvlsstnvl kektagatad
      601 kiltsllcse ktltdtsvss rssikdtsek nteslkgeqv fmvntnspvs ettksgeaqk
      661 ktpftenats kqsnysysme eltaclglwr khpsesasvq nsqsneglta nqispysqnt
      721 knreqnnvld stnegilpvt asagqkldts scnliksfel qvavvsplvl seqktqneea
      781 dkylmsagkt ypvtdsgstc nlqeegkngl svvntdkgtt etlwssphdc vlvskvdsql
      841 pqtdladgkr ivkigmsand scdenqrkvs qsaqdarenp qlglqnkpsi pelgvnfssk
      901 ifqegvtdnk dkqgvletgn astavldkqm fcissvcslv egntfynpqi asifksapet
      961 halsgtlseg napdtrqkeq rldlcknels skthqskssl qkmeeslscm skagrildct
     1021 ttshlekess gnplktists ekkmsfnasp khpendleil asinqelaqn sldfsidvta
     1081 eangltvprd ssmqnyissk ntekemnlfe vepikclnsq lselvkefpy giegadmltk
     1141 epvqcdsaae rmennlqkei qicdkkshlk npvdqieitv ltsaqmqelv pehnqssssd
     1201 ssrvasqqlv kasaednleg siqpsqslce kkktretssp mekkkpcspr twisnlpqsp
     1261 gkystsasek sdqiskaent gsaetqenns kcdaimknnc pvgnlrisek ipnsdnknkk
     1321 dicrntsvmn ekanvtvhne ykllttqkdk ieplnssene dfdksrrnsw neepevvgea
     1381 pllrrefhsd kkehqtvsee lsekadhtda dsmtksskkk drvskiesls kdksqtglav
     1441 ksetdihkft esetveikhd eisqgqkmkt ceensaeeqn crkqkeivgq dvemsikeka
     1501 klsaeikhkk vnsyradaik fpnfgtvdlk srnhknfqhk svkvhpsper sykrkrkenm
     1561 igkrdskktk veeerlkqse aknskqlshn cmistekakk lngesgrklk sslaefavlk
     1621 lqrkgaqpst isknyfsnke rcldsqskek ysekvfsdkn llylnrrnnr lklhlqkepk
     1681 khylnrvafk rmaqeriylt kletspvrpv whrktkvsqn spnvkrhisv seaeksckpe
     1741 llefklcpei lfrdpatdee sltaknslek ekaivaaeds ipldtaiqil dgdgealhip
     1801 vkdskemfqt yrkiymekkm qkp
//
LOCUS       XP_053912324            1792 aa            linear   VRT 09-MAR-2023
DEFINITION  retroelement silencing factor 1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053912324
VERSION     XP_053912324.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056349.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1792
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1792
                     /product="retroelement silencing factor 1 isoform X4"
                     /calculated_mol_wt=197403
     Region          678..1778
                     /region_name="DUF4617"
                     /note="Domain of unknown function (DUF4617); pfam15395"
                     /db_xref="CDD:464702"
     CDS             1..1792
                     /gene="RESF1"
                     /coded_by="XM_054056349.1:408..5786"
                     /db_xref="GeneID:104056348"
ORIGIN      
        1 mdwnvrplqn adkrnlqsee acytqlfsna hgfpqanass snnactyagn nqtvylptsn
       61 iafplvnaeg frtsdqtlpg apvagnesvt skyslnrpsc vpiapkppnh ttrlqaemtq
      121 twtnsngyiy syrrklpvla sqvsagnnvr nvvrqsqhvt tntytvqpqi lqhnsvrttl
      181 yqsnihpqns saslapsgqh vqnqmylpns qlivfnsqnq ntaanvqllq yqqsqmgsea
      241 psrfsappll ptscdsrata qssigvlqav qnvpggytfs qqscptdpkn asglnsvqqh
      301 cqklqsgefg qsignvciss gnvtasqpfn emcvpspgis kelysilqem etlssgaaas
      361 kvshhtsvqe sqtsslsgpv nsemsssgad griitkdrla weaerllsik krcallervh
      421 cykrkllaas qhdkstlppp tscqgtltns lmpnynvpps psktmrteip vvnaspeetn
      481 niniasadnr glevtqsnsq meqgspssss apipsqsnlp aqintpestp ileqkdvcas
      541 assqrvgtsl nnascfsqvd ssnkiastnv pinpknssfl qfvlsstnvl kektagatad
      601 kiltsllcse ktltdtsvss rssikdtsek nteslkgeqv fmvntnspvs ettksgeaqk
      661 ktpftenats kqsnysysme eltaclglwr khpsesasvq nsqsneglta nqispysqnt
      721 knreqnnvld stnegilpvt asagqkldts scnliksfel qvavvsplvl seqktqneea
      781 dkylmsagkt ypvtdsgstc nlqeegkngl svvntdkgtt etlwssphdc vlvskvdsql
      841 pqtdladgkr ivkigmsand scdenqrkvs qsaqdarenp qlglqnkpsi pelgvnfssk
      901 ifqegvtdnk dkqgvletgn astavldkqm fcissvcslv egntfynpqi asifksapet
      961 halsgtlseg napdtrqkeq rldlcknels skthqskssl qkmeeslscm skagrildct
     1021 ttshlekess gnplktists ekkmsfnasp khpendleil asinqelaqn sldfsidvta
     1081 eangltvprd ssmqnyissk ntekemnlfe vepikclnsq lselvkefpy giegadmltk
     1141 epvqcdsaae rmennlqkei qicdkkshlk npvdqieitv ltsaqmqelv pehnqssssd
     1201 ssrvasqqlv kasaednleg siqpsqslce kkktretssp mekkkpcspr twisnlpqsp
     1261 gkystsasek sdqiskaent gsaetqenns kcdaimknnc pvgnlrisek ipnsdnknkk
     1321 dicrntsvmn ekanvtvhne ykllttqkdk ieplnssene dfdksrrnsw neepevvgea
     1381 pllrrefhsd kkehqtvsee lsekadhtda dsmtksskkk drvskiesls kdksqtglav
     1441 ksetdihkft esetveikhd eisqgqkmkt ceensaeeqn crkqkeivgq dvemsikeka
     1501 klsaeikhkk vnsyradaik fpnfgtvdlk srnhknfqhk svkvhpsper sykrkrkenm
     1561 igkrdskktk veeerlkqse aknskqlshn cmistekakk lngesgrklk sslaefavlk
     1621 lqrkgaqpst isknyfsnke rcldsqskek ysekvfsdkn llylnrrnnr lklhlqkepk
     1681 khylnrvafk rmaqeriylt kletspvrpv whrktkvsqn spnvkrhisv seaeksckpe
     1741 llefklcpei lfrdpatdee sltaknslek ekaivaglsi ktvesgahea qd
//
LOCUS       XP_053912332            2946 aa            linear   VRT 09-MAR-2023
DEFINITION  neurobeachin isoform X1 [Cuculus canorus].
ACCESSION   XP_053912332
VERSION     XP_053912332.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056357.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2946
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2946
                     /product="neurobeachin isoform X1"
                     /calculated_mol_wt=328475
     Region          236..383
                     /region_name="Laminin_G_3"
                     /note="Concanavalin A-like lectin/glucanases superfamily;
                     pfam13385"
                     /db_xref="CDD:463865"
     Region          448..928
                     /region_name="DUF4704"
                     /note="Neurobeachin/BDCP, DUF4704 alpha solenoid region;
                     pfam15787"
                     /db_xref="CDD:464870"
     Region          1953..2119
                     /region_name="DUF1088"
                     /note="Neurobeachin-like, DUF1088; pfam06469"
                     /db_xref="CDD:461925"
     Region          2158..2255
                     /region_name="PH_BEACH"
                     /note="PH domain associated with Beige/BEACH; pfam14844"
                     /db_xref="CDD:434260"
     Region          2287..2563
                     /region_name="Beach"
                     /note="Beige/BEACH domain; pfam02138"
                     /db_xref="CDD:460459"
     Region          2663..2935
                     /region_name="NBCH_WD40"
                     /note="Neurobeachin beta propeller domain; pfam20426"
                     /db_xref="CDD:466575"
     Region          2724..2778
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2783..2818
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2823..2852
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2861..2899
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2907..2933
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..2946
                     /gene="NBEA"
                     /coded_by="XM_054056357.1:143..8983"
                     /db_xref="GeneID:104066160"
ORIGIN      
        1 masekavsep qpagllaagg vaamgelras gsgsvvlpag minptvpirn irmkfavlig
       61 liqvgevsnr divetvlnll vggefdlemn fiiqdaesit cmsellehcd vtcqaeiwsm
      121 ftailrksvr nlqtstevgl ieqvllkmst vddmiadllv dmlgvlasys itvkelkllf
      181 smlrgengiw prhavkllsv lnqmpqrhgp dtffnfpgcs aaaialppia kwpyqngftl
      241 ntwfrmdpln ninvdkdkpy lycfrtskgv gysahfvgnc livtslkskg kgfqhcvkyd
      301 fqprkwymis ivhiynrwrn seircyvngq lvsygdmawh vntndsydkc flgssetada
      361 nrvfcgqlga vyvftealnp aqifaihqlg pgykstfkfk sesdihlaeh hkqvlydgkl
      421 assiaftyna katdaqlcle sspkenpsif vhsphalmlq dvkaivthsi hsaihsiggi
      481 qvlfplfaql dnrqlhdsqv ettvcatlla flvellkssv amqeqmlggk gflvigylle
      541 kssrvhitra vleqflsfak yldglshgap llkqlcdhil fnpaiwihtp akvqlslyty
      601 lsaefigtat iyntirrvgt vlqlmhtlky yywvvnpads sgitpkgldg prpsqkeiis
      661 lrafmllflk qlilkdrgvk edelqsilny lltmhedeni hdvlqllval msehpasmip
      721 afdqrngirv iykllaskse siwvqalkvl gyflkhlghk rkveimhths lftllgerlm
      781 lhtntvtvtt yntlyeilte qvctqvvhkp hpepdstvki qnpmilkvva tllknstpsa
      841 elmevrrlfl sdmiklfsns renrrcllqc svwqdwmfsl gyinpknsee qkitemvyni
      901 frillyhaik yewggwrvwv dtlsiahskv tyeahkeyla kmyeeyqrqe eenikkgkkg
      961 nvstisglss qttgakggme ireiedlsqs qspesetdyp vstdtrdllm atkvsddvlg
     1021 saerpgggvh vevhdllvdi kaekveatev klddmdlspe tlvtgengal veveslldnv
     1081 ysaaveklqn nvhgsvgiik kneekdngpl itladekdep ptnstsflfd kipsqeekll
     1141 pelssnhisi pnvqetqmhl gvnddlglla hmtgsvditc assiiedkef kihttsdgms
     1201 siserelass skgleyaemt attletessg sktvpsvdag siisdtersd dgkeagkeir
     1261 kiqtttttqa iqgrsvtqqd rdlrvdlgfr gmpmteeqrr qfspgprttm fripefkwsp
     1321 mhqrlltdll faletdvhvw rshstksvmd fvnsneniif vhntihlisq mvdniiiacg
     1381 gilpllsaat sptgskvsia atelenievt qgmsaetavt flsrlmamvd vlvfasslnf
     1441 seieaeknms sgglmrqclr lvccvavrnc lecrqrqrer vnktsligsk tqdalqgvta
     1501 saatktplen vpgnlspikd pdrllqdvdi nrlravvfrd vddskqaqfl alavvyfisv
     1561 lmvskyrdil epqretarsg sqagrnirqe insptstvvv ipsiphpsln hgflaklipe
     1621 qsfahsfyke tptvfpenik dketptpved iqlessipht dsgigdeqmp nilngtdlet
     1681 stgpdamsel lstlssevkk sqesltesps eilkpassis sisqskginv keilkslvaa
     1741 pveiaecgpd pipypdpalk reahailpmq fhsfdrsvvv pvkkpppgsl avttvgaata
     1801 gsglppgstp nifaatgatp ksminttgav dsgsssssss ssfvngatsk nlpavqtvap
     1861 mpedsaenms itaklerale kvapllreif vdfapflsrt llgshgqell ieglvcmkss
     1921 tsvvelvmll csqewqnsiq knaglafiel inegrllcha mkdhivrvan eaefilnrqr
     1981 aedvhkhaef esqcaqyaad rreeekmcdh lisaakhrdh vtanqlkqki lniltnkhga
     2041 wgavshsqlh dfwrldywed dlrrrrrfvr nafgsthsda llkaaveygt eedvvkskkt
     2101 frsqavvnqn aetelmlegd ddavsllqek eidnlavlap flprlftsrg pvvlstpaql
     2161 iapvvvakgt lsittteiyf evdeddlafk kidpkvlayt eglhgkwmfs eiravfsrry
     2221 llqntalevf manrtsvmfn fpdqatvkkv vyslprvgvg tsyglpqarr islatprqly
     2281 kssnmtqrwq rreisnfeyl mflntiagrt yndlnqypvf pwvltnyese eldltlpgnf
     2341 rdlskpigal npkravfyae ryetweddqt ppyhynthys tststlawlv riepfttffl
     2401 nandgkfdhp drtfssvars wrnsqrdtsd vkelipefyy lpemfvnsng ynlgiredev
     2461 vvndvdlppw akkpedfvri nrmalesefv scqlhqwidl ifgykqrgpe avralnvfhy
     2521 ltyegsvnld sitdpvlrea meaqiqnfgq tpsqllieph pprssamhlc flpqsplmfk
     2581 dqmqqdvimv lkfpsnspvt hvaantlphl tipavvtvtc srlfavnrwh ntvglrgapg
     2641 ysldqahhlp iemdpliann sgvnkrqitd lvdqsiqina hcfvvtadnr yilicgfwdk
     2701 sfrvystetg kltqivfghw dvvtclarse syiggdcyiv sgsrdatlll wywsgrhhii
     2761 gdnpnssdyp apravltghd hevvcvsvca elglvisgak egpclvhtit gdllralegt
     2821 enclyprlis vsseghciiy yergrfsnfs ingkllaqme indstraill ssdgqnlvtg
     2881 gdngvvevwq acdfkqlyiy pgcdagiram dlshdqrtli tgmasgsiva fnidfnrwhy
     2941 ehqnry
//
LOCUS       XP_053912340            2941 aa            linear   VRT 09-MAR-2023
DEFINITION  neurobeachin isoform X2 [Cuculus canorus].
ACCESSION   XP_053912340
VERSION     XP_053912340.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056365.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2941
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2941
                     /product="neurobeachin isoform X2"
                     /calculated_mol_wt=327887
     Region          236..383
                     /region_name="Laminin_G_3"
                     /note="Concanavalin A-like lectin/glucanases superfamily;
                     pfam13385"
                     /db_xref="CDD:463865"
     Region          448..928
                     /region_name="DUF4704"
                     /note="Neurobeachin/BDCP, DUF4704 alpha solenoid region;
                     pfam15787"
                     /db_xref="CDD:464870"
     Region          1953..2119
                     /region_name="DUF1088"
                     /note="Neurobeachin-like, DUF1088; pfam06469"
                     /db_xref="CDD:461925"
     Region          2158..2255
                     /region_name="PH_BEACH"
                     /note="PH domain associated with Beige/BEACH; pfam14844"
                     /db_xref="CDD:434260"
     Region          2287..2563
                     /region_name="Beach"
                     /note="Beige/BEACH domain; pfam02138"
                     /db_xref="CDD:460459"
     Region          2658..2930
                     /region_name="NBCH_WD40"
                     /note="Neurobeachin beta propeller domain; pfam20426"
                     /db_xref="CDD:466575"
     Region          2719..2773
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2778..2813
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2818..2847
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2856..2894
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2902..2928
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..2941
                     /gene="NBEA"
                     /coded_by="XM_054056365.1:143..8968"
                     /db_xref="GeneID:104066160"
ORIGIN      
        1 masekavsep qpagllaagg vaamgelras gsgsvvlpag minptvpirn irmkfavlig
       61 liqvgevsnr divetvlnll vggefdlemn fiiqdaesit cmsellehcd vtcqaeiwsm
      121 ftailrksvr nlqtstevgl ieqvllkmst vddmiadllv dmlgvlasys itvkelkllf
      181 smlrgengiw prhavkllsv lnqmpqrhgp dtffnfpgcs aaaialppia kwpyqngftl
      241 ntwfrmdpln ninvdkdkpy lycfrtskgv gysahfvgnc livtslkskg kgfqhcvkyd
      301 fqprkwymis ivhiynrwrn seircyvngq lvsygdmawh vntndsydkc flgssetada
      361 nrvfcgqlga vyvftealnp aqifaihqlg pgykstfkfk sesdihlaeh hkqvlydgkl
      421 assiaftyna katdaqlcle sspkenpsif vhsphalmlq dvkaivthsi hsaihsiggi
      481 qvlfplfaql dnrqlhdsqv ettvcatlla flvellkssv amqeqmlggk gflvigylle
      541 kssrvhitra vleqflsfak yldglshgap llkqlcdhil fnpaiwihtp akvqlslyty
      601 lsaefigtat iyntirrvgt vlqlmhtlky yywvvnpads sgitpkgldg prpsqkeiis
      661 lrafmllflk qlilkdrgvk edelqsilny lltmhedeni hdvlqllval msehpasmip
      721 afdqrngirv iykllaskse siwvqalkvl gyflkhlghk rkveimhths lftllgerlm
      781 lhtntvtvtt yntlyeilte qvctqvvhkp hpepdstvki qnpmilkvva tllknstpsa
      841 elmevrrlfl sdmiklfsns renrrcllqc svwqdwmfsl gyinpknsee qkitemvyni
      901 frillyhaik yewggwrvwv dtlsiahskv tyeahkeyla kmyeeyqrqe eenikkgkkg
      961 nvstisglss qttgakggme ireiedlsqs qspesetdyp vstdtrdllm atkvsddvlg
     1021 saerpgggvh vevhdllvdi kaekveatev klddmdlspe tlvtgengal veveslldnv
     1081 ysaaveklqn nvhgsvgiik kneekdngpl itladekdep ptnstsflfd kipsqeekll
     1141 pelssnhisi pnvqetqmhl gvnddlglla hmtgsvditc assiiedkef kihttsdgms
     1201 siserelass skgleyaemt attletessg sktvpsvdag siisdtersd dgkeagkeir
     1261 kiqtttttqa iqgrsvtqqd rdlrvdlgfr gmpmteeqrr qfspgprttm fripefkwsp
     1321 mhqrlltdll faletdvhvw rshstksvmd fvnsneniif vhntihlisq mvdniiiacg
     1381 gilpllsaat sptgskvsia atelenievt qgmsaetavt flsrlmamvd vlvfasslnf
     1441 seieaeknms sgglmrqclr lvccvavrnc lecrqrqrer vnktsligsk tqdalqgvta
     1501 saatktplen vpgnlspikd pdrllqdvdi nrlravvfrd vddskqaqfl alavvyfisv
     1561 lmvskyrdil epqretarsg sqagrnirqe insptstvvv ipsiphpsln hgflaklipe
     1621 qsfahsfyke tptvfpenik dketptpved iqlessipht dsgigdeqmp nilngtdlet
     1681 stgpdamsel lstlssevkk sqesltesps eilkpassis sisqskginv keilkslvaa
     1741 pveiaecgpd pipypdpalk reahailpmq fhsfdrsvvv pvkkpppgsl avttvgaata
     1801 gsglppgstp nifaatgatp ksminttgav dsgsssssss ssfvngatsk nlpavqtvap
     1861 mpedsaenms itaklerale kvapllreif vdfapflsrt llgshgqell ieglvcmkss
     1921 tsvvelvmll csqewqnsiq knaglafiel inegrllcha mkdhivrvan eaefilnrqr
     1981 aedvhkhaef esqcaqyaad rreeekmcdh lisaakhrdh vtanqlkqki lniltnkhga
     2041 wgavshsqlh dfwrldywed dlrrrrrfvr nafgsthsda llkaaveygt eedvvkskkt
     2101 frsqavvnqn aetelmlegd ddavsllqek eidnlavlap flprlftsrg pvvlstpaql
     2161 iapvvvakgt lsittteiyf evdeddlafk kidpkvlayt eglhgkwmfs eiravfsrry
     2221 llqntalevf manrtsvmfn fpdqatvkkv vyslprvgvg tsyglpqarr islatprqly
     2281 kssnmtqrwq rreisnfeyl mflntiagrt yndlnqypvf pwvltnyese eldltlpgnf
     2341 rdlskpigal npkravfyae ryetweddqt ppyhynthys tststlawlv riepfttffl
     2401 nandgkfdhp drtfssvars wrnsqrdtsd vkelipefyy lpemfvnsng ynlgiredev
     2461 vvndvdlppw akkpedfvri nrmalesefv scqlhqwidl ifgykqrgpe avralnvfhy
     2521 ltyegsvnld sitdpvlrea meaqiqnfgq tpsqllieph pprssamhls plmfkdqmqq
     2581 dvimvlkfps nspvthvaan tlphltipav vtvtcsrlfa vnrwhntvgl rgapgysldq
     2641 ahhlpiemdp liannsgvnk rqitdlvdqs iqinahcfvv tadnryilic gfwdksfrvy
     2701 stetgkltqi vfghwdvvtc larsesyigg dcyivsgsrd atlllwywsg rhhiigdnpn
     2761 ssdypaprav ltghdhevvc vsvcaelglv isgakegpcl vhtitgdllr alegtencly
     2821 prlisvsseg hciiyyergr fsnfsingkl laqmeindst raillssdgq nlvtggdngv
     2881 vevwqacdfk qlyiypgcda giramdlshd qrtlitgmas gsivafnidf nrwhyehqnr
     2941 y
//
LOCUS       XP_053912348            2940 aa            linear   VRT 09-MAR-2023
DEFINITION  neurobeachin isoform X3 [Cuculus canorus].
ACCESSION   XP_053912348
VERSION     XP_053912348.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056373.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2940
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2940
                     /product="neurobeachin isoform X3"
                     /calculated_mol_wt=327858
     Region          236..383
                     /region_name="Laminin_G_3"
                     /note="Concanavalin A-like lectin/glucanases superfamily;
                     pfam13385"
                     /db_xref="CDD:463865"
     Region          448..928
                     /region_name="DUF4704"
                     /note="Neurobeachin/BDCP, DUF4704 alpha solenoid region;
                     pfam15787"
                     /db_xref="CDD:464870"
     Region          1947..2113
                     /region_name="DUF1088"
                     /note="Neurobeachin-like, DUF1088; pfam06469"
                     /db_xref="CDD:461925"
     Region          2152..2249
                     /region_name="PH_BEACH"
                     /note="PH domain associated with Beige/BEACH; pfam14844"
                     /db_xref="CDD:434260"
     Region          2281..2557
                     /region_name="Beach"
                     /note="Beige/BEACH domain; pfam02138"
                     /db_xref="CDD:460459"
     Region          2657..2929
                     /region_name="NBCH_WD40"
                     /note="Neurobeachin beta propeller domain; pfam20426"
                     /db_xref="CDD:466575"
     Region          2718..2772
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2777..2812
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2817..2846
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2855..2893
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2901..2927
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..2940
                     /gene="NBEA"
                     /coded_by="XM_054056373.1:143..8965"
                     /db_xref="GeneID:104066160"
ORIGIN      
        1 masekavsep qpagllaagg vaamgelras gsgsvvlpag minptvpirn irmkfavlig
       61 liqvgevsnr divetvlnll vggefdlemn fiiqdaesit cmsellehcd vtcqaeiwsm
      121 ftailrksvr nlqtstevgl ieqvllkmst vddmiadllv dmlgvlasys itvkelkllf
      181 smlrgengiw prhavkllsv lnqmpqrhgp dtffnfpgcs aaaialppia kwpyqngftl
      241 ntwfrmdpln ninvdkdkpy lycfrtskgv gysahfvgnc livtslkskg kgfqhcvkyd
      301 fqprkwymis ivhiynrwrn seircyvngq lvsygdmawh vntndsydkc flgssetada
      361 nrvfcgqlga vyvftealnp aqifaihqlg pgykstfkfk sesdihlaeh hkqvlydgkl
      421 assiaftyna katdaqlcle sspkenpsif vhsphalmlq dvkaivthsi hsaihsiggi
      481 qvlfplfaql dnrqlhdsqv ettvcatlla flvellkssv amqeqmlggk gflvigylle
      541 kssrvhitra vleqflsfak yldglshgap llkqlcdhil fnpaiwihtp akvqlslyty
      601 lsaefigtat iyntirrvgt vlqlmhtlky yywvvnpads sgitpkgldg prpsqkeiis
      661 lrafmllflk qlilkdrgvk edelqsilny lltmhedeni hdvlqllval msehpasmip
      721 afdqrngirv iykllaskse siwvqalkvl gyflkhlghk rkveimhths lftllgerlm
      781 lhtntvtvtt yntlyeilte qvctqvvhkp hpepdstvki qnpmilkvva tllknstpsa
      841 elmevrrlfl sdmiklfsns renrrcllqc svwqdwmfsl gyinpknsee qkitemvyni
      901 frillyhaik yewggwrvwv dtlsiahskv tyeahkeyla kmyeeyqrqe eenikkgkkg
      961 nvstisglss qttgakggme ireiedlsqs qspesetdyp vstdtrdllm atkvsddvlg
     1021 saerpgggvh vevhdllvdi kaekveatev klddmdlspe tlvtgengal veveslldnv
     1081 ysaaveklqn nvhgsvgiik kneekdngpl itladekdep ptnstsflfd kipsqeekll
     1141 pelssnhisi pnvqetqmhl gvnddlglla hmtgsvditc assiiedkef kihttsdgms
     1201 siserelass skgleyaemt attletessg sktvpsvdag siisdtersd dgkeagkeir
     1261 kiqtttttqa iqgrsvtqqd rdlrvdlgfr gmpmteeqrr qfspgprttm fripefkwsp
     1321 mhqrlltdll faletdvhvw rshstksvmd fvnsneniif vhntihlisq mvdniiiacg
     1381 gilpllsaat sptgskvsia atelenievt qgmsaetavt flsrlmamvd vlvfasslnf
     1441 seieaeknms sgglmrqclr lvccvavrnc lecrqrqrer vnktsligsk tqdalqgvta
     1501 saatktplen vpgnlspikd pdrllqdvdi nrlravvfrd vddskqaqfl alavvyfisv
     1561 lmvskyrdil epqretarsg sqagrnirqe insptstvvv ipsiphpsln hgflaklipe
     1621 qsfahsfyke tptvfpenik dketptpved iqlessipht dsgigdeqmp nilngtdlet
     1681 stgpdamsel lstlssevkk sqesltesps eilkpassis sisqskginv keilkslvaa
     1741 pveiaecgpd pipypdpalk reahailpmq fhsfdrsvvv pvkkpppgsl avttvgaata
     1801 gsglppgstp nifaatgatp ksavdsgsss ssssssfvng atsknlpavq tvapmpedsa
     1861 enmsitakle ralekvapll reifvdfapf lsrtllgshg qellieglvc mksstsvvel
     1921 vmllcsqewq nsiqknagla fielinegrl lchamkdhiv rvaneaefil nrqraedvhk
     1981 haefesqcaq yaadrreeek mcdhlisaak hrdhvtanql kqkilniltn khgawgavsh
     2041 sqlhdfwrld yweddlrrrr rfvrnafgst hsdallkaav eygteedvvk skktfrsqav
     2101 vnqnaetelm legdddavsl lqekeidnla vlapflprlf tsrgpvvlst paqliapvvv
     2161 akgtlsittt eiyfevdedd lafkkidpkv layteglhgk wmfseiravf srryllqnta
     2221 levfmanrts vmfnfpdqat vkkvvyslpr vgvgtsyglp qarrislatp rqlykssnmt
     2281 qrwqrreisn feylmflnti agrtyndlnq ypvfpwvltn yeseeldltl pgnfrdlskp
     2341 igalnpkrav fyaeryetwe ddqtppyhyn thystststl awlvriepft tfflnandgk
     2401 fdhpdrtfss varswrnsqr dtsdvkelip efyylpemfv nsngynlgir edevvvndvd
     2461 lppwakkped fvrinrmale sefvscqlhq widlifgykq rgpeavraln vfhyltyegs
     2521 vnldsitdpv lreameaqiq nfgqtpsqll iephpprssa mhlcflpqsp lmfkdqmqqd
     2581 vimvlkfpsn spvthvaant lphltipavv tvtcsrlfav nrwhntvglr gapgysldqa
     2641 hhlpiemdpl iannsgvnkr qitdlvdqsi qinahcfvvt adnryilicg fwdksfrvys
     2701 tetgkltqiv fghwdvvtcl arsesyiggd cyivsgsrda tlllwywsgr hhiigdnpns
     2761 sdypapravl tghdhevvcv svcaelglvi sgakegpclv htitgdllra legtenclyp
     2821 rlisvssegh ciiyyergrf snfsingkll aqmeindstr aillssdgqn lvtggdngvv
     2881 evwqacdfkq lyiypgcdag iramdlshdq rtlitgmasg sivafnidfn rwhyehqnry
//
LOCUS       XP_053912353            2938 aa            linear   VRT 09-MAR-2023
DEFINITION  neurobeachin isoform X4 [Cuculus canorus].
ACCESSION   XP_053912353
VERSION     XP_053912353.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056378.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2938
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2938
                     /product="neurobeachin isoform X4"
                     /calculated_mol_wt=327762
     Region          236..383
                     /region_name="Laminin_G_3"
                     /note="Concanavalin A-like lectin/glucanases superfamily;
                     pfam13385"
                     /db_xref="CDD:463865"
     Region          448..928
                     /region_name="DUF4704"
                     /note="Neurobeachin/BDCP, DUF4704 alpha solenoid region;
                     pfam15787"
                     /db_xref="CDD:464870"
     Region          1945..2111
                     /region_name="DUF1088"
                     /note="Neurobeachin-like, DUF1088; pfam06469"
                     /db_xref="CDD:461925"
     Region          2150..2247
                     /region_name="PH_BEACH"
                     /note="PH domain associated with Beige/BEACH; pfam14844"
                     /db_xref="CDD:434260"
     Region          2279..2555
                     /region_name="Beach"
                     /note="Beige/BEACH domain; pfam02138"
                     /db_xref="CDD:460459"
     Region          2655..2927
                     /region_name="NBCH_WD40"
                     /note="Neurobeachin beta propeller domain; pfam20426"
                     /db_xref="CDD:466575"
     Region          2716..2770
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2775..2810
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2815..2844
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2853..2891
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2899..2925
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..2938
                     /gene="NBEA"
                     /coded_by="XM_054056378.1:143..8959"
                     /db_xref="GeneID:104066160"
ORIGIN      
        1 masekavsep qpagllaagg vaamgelras gsgsvvlpag minptvpirn irmkfavlig
       61 liqvgevsnr divetvlnll vggefdlemn fiiqdaesit cmsellehcd vtcqaeiwsm
      121 ftailrksvr nlqtstevgl ieqvllkmst vddmiadllv dmlgvlasys itvkelkllf
      181 smlrgengiw prhavkllsv lnqmpqrhgp dtffnfpgcs aaaialppia kwpyqngftl
      241 ntwfrmdpln ninvdkdkpy lycfrtskgv gysahfvgnc livtslkskg kgfqhcvkyd
      301 fqprkwymis ivhiynrwrn seircyvngq lvsygdmawh vntndsydkc flgssetada
      361 nrvfcgqlga vyvftealnp aqifaihqlg pgykstfkfk sesdihlaeh hkqvlydgkl
      421 assiaftyna katdaqlcle sspkenpsif vhsphalmlq dvkaivthsi hsaihsiggi
      481 qvlfplfaql dnrqlhdsqv ettvcatlla flvellkssv amqeqmlggk gflvigylle
      541 kssrvhitra vleqflsfak yldglshgap llkqlcdhil fnpaiwihtp akvqlslyty
      601 lsaefigtat iyntirrvgt vlqlmhtlky yywvvnpads sgitpkgldg prpsqkeiis
      661 lrafmllflk qlilkdrgvk edelqsilny lltmhedeni hdvlqllval msehpasmip
      721 afdqrngirv iykllaskse siwvqalkvl gyflkhlghk rkveimhths lftllgerlm
      781 lhtntvtvtt yntlyeilte qvctqvvhkp hpepdstvki qnpmilkvva tllknstpsa
      841 elmevrrlfl sdmiklfsns renrrcllqc svwqdwmfsl gyinpknsee qkitemvyni
      901 frillyhaik yewggwrvwv dtlsiahskv tyeahkeyla kmyeeyqrqe eenikkgkkg
      961 nvstisglss qttgakggme ireiedlsqs qspesetdyp vstdtrdllm atkvsddvlg
     1021 saerpgggvh vevhdllvdi kaekveatev klddmdlspe tlvtgengal veveslldnv
     1081 ysaaveklqn nvhgsvgiik kneekdngpl itladekdep ptnstsflfd kipsqeekll
     1141 pelssnhisi pnvqetqmhl gvnddlglla hmtgsvditc assiiedkef kihttsdgms
     1201 siserelass skgleyaemt attletessg sktvpsvdag siisdtersd dgkeagkeir
     1261 kiqtttttqa iqgrsvtqqd rdlrvdlgfr gmpmteeqrr qfspgprttm fripefkwsp
     1321 mhqrlltdll faletdvhvw rshstksvmd fvnsneniif vhntihlisq mvdniiiacg
     1381 gilpllsaat spttelenie vtqgmsaeta vtflsrlmam vdvlvfassl nfseieaekn
     1441 mssgglmrqc lrlvccvavr nclecrqrqr ervnktslig sktqdalqgv tasaatktpl
     1501 envpgnlspi kdpdrllqdv dinrlravvf rdvddskqaq flalavvyfi svlmvskyrd
     1561 ilepqretar sgsqagrnir qeinsptstv vvipsiphps lnhgflakli peqsfahsfy
     1621 ketptvfpen ikdketptpv ediqlessip htdsgigdeq mpnilngtdl etstgpdams
     1681 ellstlssev kksqesltes pseilkpass issisqskgi nvkeilkslv aapveiaecg
     1741 pdpipypdpa lkreahailp mqfhsfdrsv vvpvkkpppg slavttvgaa tagsglppgs
     1801 tpnifaatga tpksminttg avdsgsssss ssssfvngat sknlpavqtv apmpedsaen
     1861 msitaklera lekvapllre ifvdfapfls rtllgshgqe llieglvcmk sstsvvelvm
     1921 llcsqewqns iqknaglafi elinegrllc hamkdhivrv aneaefilnr qraedvhkha
     1981 efesqcaqya adrreeekmc dhlisaakhr dhvtanqlkq kilniltnkh gawgavshsq
     2041 lhdfwrldyw eddlrrrrrf vrnafgsths dallkaavey gteedvvksk ktfrsqavvn
     2101 qnaetelmle gdddavsllq ekeidnlavl apflprlfts rgpvvlstpa qliapvvvak
     2161 gtlsitttei yfevdeddla fkkidpkvla yteglhgkwm fseiravfsr ryllqntale
     2221 vfmanrtsvm fnfpdqatvk kvvyslprvg vgtsyglpqa rrislatprq lykssnmtqr
     2281 wqrreisnfe ylmflntiag rtyndlnqyp vfpwvltnye seeldltlpg nfrdlskpig
     2341 alnpkravfy aeryetwedd qtppyhynth ystststlaw lvriepfttf flnandgkfd
     2401 hpdrtfssva rswrnsqrdt sdvkelipef yylpemfvns ngynlgired evvvndvdlp
     2461 pwakkpedfv rinrmalese fvscqlhqwi dlifgykqrg peavralnvf hyltyegsvn
     2521 ldsitdpvlr eameaqiqnf gqtpsqllie phpprssamh lcflpqsplm fkdqmqqdvi
     2581 mvlkfpsnsp vthvaantlp hltipavvtv tcsrlfavnr whntvglrga pgysldqahh
     2641 lpiemdplia nnsgvnkrqi tdlvdqsiqi nahcfvvtad nryilicgfw dksfrvyste
     2701 tgkltqivfg hwdvvtclar sesyiggdcy ivsgsrdatl llwywsgrhh iigdnpnssd
     2761 ypapravltg hdhevvcvsv caelglvisg akegpclvht itgdllrale gtenclyprl
     2821 isvsseghci iyyergrfsn fsingkllaq meindstrai llssdgqnlv tggdngvvev
     2881 wqacdfkqly iypgcdagir amdlshdqrt litgmasgsi vafnidfnrw hyehqnry
//
LOCUS       XP_053912359            2933 aa            linear   VRT 09-MAR-2023
DEFINITION  neurobeachin isoform X5 [Cuculus canorus].
ACCESSION   XP_053912359
VERSION     XP_053912359.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056384.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2933
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2933
                     /product="neurobeachin isoform X5"
                     /calculated_mol_wt=326977
     Region          236..383
                     /region_name="Laminin_G_3"
                     /note="Concanavalin A-like lectin/glucanases superfamily;
                     pfam13385"
                     /db_xref="CDD:463865"
     Region          448..928
                     /region_name="DUF4704"
                     /note="Neurobeachin/BDCP, DUF4704 alpha solenoid region;
                     pfam15787"
                     /db_xref="CDD:464870"
     Region          1953..2119
                     /region_name="DUF1088"
                     /note="Neurobeachin-like, DUF1088; pfam06469"
                     /db_xref="CDD:461925"
     Region          2145..2242
                     /region_name="PH_BEACH"
                     /note="PH domain associated with Beige/BEACH; pfam14844"
                     /db_xref="CDD:434260"
     Region          2274..2550
                     /region_name="Beach"
                     /note="Beige/BEACH domain; pfam02138"
                     /db_xref="CDD:460459"
     Region          2650..2922
                     /region_name="NBCH_WD40"
                     /note="Neurobeachin beta propeller domain; pfam20426"
                     /db_xref="CDD:466575"
     Region          2711..2765
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2770..2805
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2810..2839
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2848..2886
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2894..2920
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..2933
                     /gene="NBEA"
                     /coded_by="XM_054056384.1:143..8944"
                     /db_xref="GeneID:104066160"
ORIGIN      
        1 masekavsep qpagllaagg vaamgelras gsgsvvlpag minptvpirn irmkfavlig
       61 liqvgevsnr divetvlnll vggefdlemn fiiqdaesit cmsellehcd vtcqaeiwsm
      121 ftailrksvr nlqtstevgl ieqvllkmst vddmiadllv dmlgvlasys itvkelkllf
      181 smlrgengiw prhavkllsv lnqmpqrhgp dtffnfpgcs aaaialppia kwpyqngftl
      241 ntwfrmdpln ninvdkdkpy lycfrtskgv gysahfvgnc livtslkskg kgfqhcvkyd
      301 fqprkwymis ivhiynrwrn seircyvngq lvsygdmawh vntndsydkc flgssetada
      361 nrvfcgqlga vyvftealnp aqifaihqlg pgykstfkfk sesdihlaeh hkqvlydgkl
      421 assiaftyna katdaqlcle sspkenpsif vhsphalmlq dvkaivthsi hsaihsiggi
      481 qvlfplfaql dnrqlhdsqv ettvcatlla flvellkssv amqeqmlggk gflvigylle
      541 kssrvhitra vleqflsfak yldglshgap llkqlcdhil fnpaiwihtp akvqlslyty
      601 lsaefigtat iyntirrvgt vlqlmhtlky yywvvnpads sgitpkgldg prpsqkeiis
      661 lrafmllflk qlilkdrgvk edelqsilny lltmhedeni hdvlqllval msehpasmip
      721 afdqrngirv iykllaskse siwvqalkvl gyflkhlghk rkveimhths lftllgerlm
      781 lhtntvtvtt yntlyeilte qvctqvvhkp hpepdstvki qnpmilkvva tllknstpsa
      841 elmevrrlfl sdmiklfsns renrrcllqc svwqdwmfsl gyinpknsee qkitemvyni
      901 frillyhaik yewggwrvwv dtlsiahskv tyeahkeyla kmyeeyqrqe eenikkgkkg
      961 nvstisglss qttgakggme ireiedlsqs qspesetdyp vstdtrdllm atkvsddvlg
     1021 saerpgggvh vevhdllvdi kaekveatev klddmdlspe tlvtgengal veveslldnv
     1081 ysaaveklqn nvhgsvgiik kneekdngpl itladekdep ptnstsflfd kipsqeekll
     1141 pelssnhisi pnvqetqmhl gvnddlglla hmtgsvditc assiiedkef kihttsdgms
     1201 siserelass skgleyaemt attletessg sktvpsvdag siisdtersd dgkeagkeir
     1261 kiqtttttqa iqgrsvtqqd rdlrvdlgfr gmpmteeqrr qfspgprttm fripefkwsp
     1321 mhqrlltdll faletdvhvw rshstksvmd fvnsneniif vhntihlisq mvdniiiacg
     1381 gilpllsaat sptgskvsia atelenievt qgmsaetavt flsrlmamvd vlvfasslnf
     1441 seieaeknms sgglmrqclr lvccvavrnc lecrqrqrer vnktsligsk tqdalqgvta
     1501 saatktplen vpgnlspikd pdrllqdvdi nrlravvfrd vddskqaqfl alavvyfisv
     1561 lmvskyrdil epqretarsg sqagrnirqe insptstvvv ipsiphpsln hgflaklipe
     1621 qsfahsfyke tptvfpenik dketptpved iqlessipht dsgigdeqmp nilngtdlet
     1681 stgpdamsel lstlssevkk sqesltesps eilkpassis sisqskginv keilkslvaa
     1741 pveiaecgpd pipypdpalk reahailpmq fhsfdrsvvv pvkkpppgsl avttvgaata
     1801 gsglppgstp nifaatgatp ksminttgav dsgsssssss ssfvngatsk nlpavqtvap
     1861 mpedsaenms itaklerale kvapllreif vdfapflsrt llgshgqell ieglvcmkss
     1921 tsvvelvmll csqewqnsiq knaglafiel inegrllcha mkdhivrvan eaefilnrqr
     1981 aedvhkhaef esqcaqyaad rreeekmcdh lisaakhrdh vtanqlkqki lniltnkhga
     2041 wgavshsqlh dfwrldywed dlrrrrrfvr nafgsthsda llkaaveygt eedvvkskkt
     2101 frsqavvnqn aetelmlegd ddavsllqek eidnlagpvv lstpaqliap vvvakgtlsi
     2161 ttteiyfevd eddlafkkid pkvlaytegl hgkwmfseir avfsrryllq ntalevfman
     2221 rtsvmfnfpd qatvkkvvys lprvgvgtsy glpqarrisl atprqlykss nmtqrwqrre
     2281 isnfeylmfl ntiagrtynd lnqypvfpwv ltnyeseeld ltlpgnfrdl skpigalnpk
     2341 ravfyaerye tweddqtppy hynthystst stlawlvrie pfttfflnan dgkfdhpdrt
     2401 fssvarswrn sqrdtsdvke lipefyylpe mfvnsngynl giredevvvn dvdlppwakk
     2461 pedfvrinrm alesefvscq lhqwidlifg ykqrgpeavr alnvfhylty egsvnldsit
     2521 dpvlreamea qiqnfgqtps qlliephppr ssamhlcflp qsplmfkdqm qqdvimvlkf
     2581 psnspvthva antlphltip avvtvtcsrl favnrwhntv glrgapgysl dqahhlpiem
     2641 dpliannsgv nkrqitdlvd qsiqinahcf vvtadnryil icgfwdksfr vystetgklt
     2701 qivfghwdvv tclarsesyi ggdcyivsgs rdatlllwyw sgrhhiigdn pnssdypapr
     2761 avltghdhev vcvsvcaelg lvisgakegp clvhtitgdl lralegtenc lyprlisvss
     2821 eghciiyyer grfsnfsing kllaqmeind straillssd gqnlvtggdn gvvevwqacd
     2881 fkqlyiypgc dagiramdls hdqrtlitgm asgsivafni dfnrwhyehq nry
//
LOCUS       XP_053912364            2928 aa            linear   VRT 09-MAR-2023
DEFINITION  neurobeachin isoform X6 [Cuculus canorus].
ACCESSION   XP_053912364
VERSION     XP_053912364.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056389.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2928
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2928
                     /product="neurobeachin isoform X6"
                     /calculated_mol_wt=326388
     Region          236..383
                     /region_name="Laminin_G_3"
                     /note="Concanavalin A-like lectin/glucanases superfamily;
                     pfam13385"
                     /db_xref="CDD:463865"
     Region          448..928
                     /region_name="DUF4704"
                     /note="Neurobeachin/BDCP, DUF4704 alpha solenoid region;
                     pfam15787"
                     /db_xref="CDD:464870"
     Region          1953..2119
                     /region_name="DUF1088"
                     /note="Neurobeachin-like, DUF1088; pfam06469"
                     /db_xref="CDD:461925"
     Region          2145..2242
                     /region_name="PH_BEACH"
                     /note="PH domain associated with Beige/BEACH; pfam14844"
                     /db_xref="CDD:434260"
     Region          2274..2550
                     /region_name="Beach"
                     /note="Beige/BEACH domain; pfam02138"
                     /db_xref="CDD:460459"
     Region          2645..2917
                     /region_name="NBCH_WD40"
                     /note="Neurobeachin beta propeller domain; pfam20426"
                     /db_xref="CDD:466575"
     Region          2706..2760
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2765..2800
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2805..2834
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2843..2881
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2889..2915
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..2928
                     /gene="NBEA"
                     /coded_by="XM_054056389.1:143..8929"
                     /db_xref="GeneID:104066160"
ORIGIN      
        1 masekavsep qpagllaagg vaamgelras gsgsvvlpag minptvpirn irmkfavlig
       61 liqvgevsnr divetvlnll vggefdlemn fiiqdaesit cmsellehcd vtcqaeiwsm
      121 ftailrksvr nlqtstevgl ieqvllkmst vddmiadllv dmlgvlasys itvkelkllf
      181 smlrgengiw prhavkllsv lnqmpqrhgp dtffnfpgcs aaaialppia kwpyqngftl
      241 ntwfrmdpln ninvdkdkpy lycfrtskgv gysahfvgnc livtslkskg kgfqhcvkyd
      301 fqprkwymis ivhiynrwrn seircyvngq lvsygdmawh vntndsydkc flgssetada
      361 nrvfcgqlga vyvftealnp aqifaihqlg pgykstfkfk sesdihlaeh hkqvlydgkl
      421 assiaftyna katdaqlcle sspkenpsif vhsphalmlq dvkaivthsi hsaihsiggi
      481 qvlfplfaql dnrqlhdsqv ettvcatlla flvellkssv amqeqmlggk gflvigylle
      541 kssrvhitra vleqflsfak yldglshgap llkqlcdhil fnpaiwihtp akvqlslyty
      601 lsaefigtat iyntirrvgt vlqlmhtlky yywvvnpads sgitpkgldg prpsqkeiis
      661 lrafmllflk qlilkdrgvk edelqsilny lltmhedeni hdvlqllval msehpasmip
      721 afdqrngirv iykllaskse siwvqalkvl gyflkhlghk rkveimhths lftllgerlm
      781 lhtntvtvtt yntlyeilte qvctqvvhkp hpepdstvki qnpmilkvva tllknstpsa
      841 elmevrrlfl sdmiklfsns renrrcllqc svwqdwmfsl gyinpknsee qkitemvyni
      901 frillyhaik yewggwrvwv dtlsiahskv tyeahkeyla kmyeeyqrqe eenikkgkkg
      961 nvstisglss qttgakggme ireiedlsqs qspesetdyp vstdtrdllm atkvsddvlg
     1021 saerpgggvh vevhdllvdi kaekveatev klddmdlspe tlvtgengal veveslldnv
     1081 ysaaveklqn nvhgsvgiik kneekdngpl itladekdep ptnstsflfd kipsqeekll
     1141 pelssnhisi pnvqetqmhl gvnddlglla hmtgsvditc assiiedkef kihttsdgms
     1201 siserelass skgleyaemt attletessg sktvpsvdag siisdtersd dgkeagkeir
     1261 kiqtttttqa iqgrsvtqqd rdlrvdlgfr gmpmteeqrr qfspgprttm fripefkwsp
     1321 mhqrlltdll faletdvhvw rshstksvmd fvnsneniif vhntihlisq mvdniiiacg
     1381 gilpllsaat sptgskvsia atelenievt qgmsaetavt flsrlmamvd vlvfasslnf
     1441 seieaeknms sgglmrqclr lvccvavrnc lecrqrqrer vnktsligsk tqdalqgvta
     1501 saatktplen vpgnlspikd pdrllqdvdi nrlravvfrd vddskqaqfl alavvyfisv
     1561 lmvskyrdil epqretarsg sqagrnirqe insptstvvv ipsiphpsln hgflaklipe
     1621 qsfahsfyke tptvfpenik dketptpved iqlessipht dsgigdeqmp nilngtdlet
     1681 stgpdamsel lstlssevkk sqesltesps eilkpassis sisqskginv keilkslvaa
     1741 pveiaecgpd pipypdpalk reahailpmq fhsfdrsvvv pvkkpppgsl avttvgaata
     1801 gsglppgstp nifaatgatp ksminttgav dsgsssssss ssfvngatsk nlpavqtvap
     1861 mpedsaenms itaklerale kvapllreif vdfapflsrt llgshgqell ieglvcmkss
     1921 tsvvelvmll csqewqnsiq knaglafiel inegrllcha mkdhivrvan eaefilnrqr
     1981 aedvhkhaef esqcaqyaad rreeekmcdh lisaakhrdh vtanqlkqki lniltnkhga
     2041 wgavshsqlh dfwrldywed dlrrrrrfvr nafgsthsda llkaaveygt eedvvkskkt
     2101 frsqavvnqn aetelmlegd ddavsllqek eidnlagpvv lstpaqliap vvvakgtlsi
     2161 ttteiyfevd eddlafkkid pkvlaytegl hgkwmfseir avfsrryllq ntalevfman
     2221 rtsvmfnfpd qatvkkvvys lprvgvgtsy glpqarrisl atprqlykss nmtqrwqrre
     2281 isnfeylmfl ntiagrtynd lnqypvfpwv ltnyeseeld ltlpgnfrdl skpigalnpk
     2341 ravfyaerye tweddqtppy hynthystst stlawlvrie pfttfflnan dgkfdhpdrt
     2401 fssvarswrn sqrdtsdvke lipefyylpe mfvnsngynl giredevvvn dvdlppwakk
     2461 pedfvrinrm alesefvscq lhqwidlifg ykqrgpeavr alnvfhylty egsvnldsit
     2521 dpvlreamea qiqnfgqtps qlliephppr ssamhlsplm fkdqmqqdvi mvlkfpsnsp
     2581 vthvaantlp hltipavvtv tcsrlfavnr whntvglrga pgysldqahh lpiemdplia
     2641 nnsgvnkrqi tdlvdqsiqi nahcfvvtad nryilicgfw dksfrvyste tgkltqivfg
     2701 hwdvvtclar sesyiggdcy ivsgsrdatl llwywsgrhh iigdnpnssd ypapravltg
     2761 hdhevvcvsv caelglvisg akegpclvht itgdllrale gtenclyprl isvsseghci
     2821 iyyergrfsn fsingkllaq meindstrai llssdgqnlv tggdngvvev wqacdfkqly
     2881 iypgcdagir amdlshdqrt litgmasgsi vafnidfnrw hyehqnry
//
LOCUS       XP_053912374            2925 aa            linear   VRT 09-MAR-2023
DEFINITION  neurobeachin isoform X7 [Cuculus canorus].
ACCESSION   XP_053912374
VERSION     XP_053912374.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056399.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2925
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2925
                     /product="neurobeachin isoform X7"
                     /calculated_mol_wt=326263
     Region          236..383
                     /region_name="Laminin_G_3"
                     /note="Concanavalin A-like lectin/glucanases superfamily;
                     pfam13385"
                     /db_xref="CDD:463865"
     Region          448..928
                     /region_name="DUF4704"
                     /note="Neurobeachin/BDCP, DUF4704 alpha solenoid region;
                     pfam15787"
                     /db_xref="CDD:464870"
     Region          1945..2111
                     /region_name="DUF1088"
                     /note="Neurobeachin-like, DUF1088; pfam06469"
                     /db_xref="CDD:461925"
     Region          2137..2234
                     /region_name="PH_BEACH"
                     /note="PH domain associated with Beige/BEACH; pfam14844"
                     /db_xref="CDD:434260"
     Region          2266..2542
                     /region_name="Beach"
                     /note="Beige/BEACH domain; pfam02138"
                     /db_xref="CDD:460459"
     Region          2642..2914
                     /region_name="NBCH_WD40"
                     /note="Neurobeachin beta propeller domain; pfam20426"
                     /db_xref="CDD:466575"
     Region          2703..2757
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2762..2797
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2802..2831
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2840..2878
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2886..2912
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..2925
                     /gene="NBEA"
                     /coded_by="XM_054056399.1:143..8920"
                     /db_xref="GeneID:104066160"
ORIGIN      
        1 masekavsep qpagllaagg vaamgelras gsgsvvlpag minptvpirn irmkfavlig
       61 liqvgevsnr divetvlnll vggefdlemn fiiqdaesit cmsellehcd vtcqaeiwsm
      121 ftailrksvr nlqtstevgl ieqvllkmst vddmiadllv dmlgvlasys itvkelkllf
      181 smlrgengiw prhavkllsv lnqmpqrhgp dtffnfpgcs aaaialppia kwpyqngftl
      241 ntwfrmdpln ninvdkdkpy lycfrtskgv gysahfvgnc livtslkskg kgfqhcvkyd
      301 fqprkwymis ivhiynrwrn seircyvngq lvsygdmawh vntndsydkc flgssetada
      361 nrvfcgqlga vyvftealnp aqifaihqlg pgykstfkfk sesdihlaeh hkqvlydgkl
      421 assiaftyna katdaqlcle sspkenpsif vhsphalmlq dvkaivthsi hsaihsiggi
      481 qvlfplfaql dnrqlhdsqv ettvcatlla flvellkssv amqeqmlggk gflvigylle
      541 kssrvhitra vleqflsfak yldglshgap llkqlcdhil fnpaiwihtp akvqlslyty
      601 lsaefigtat iyntirrvgt vlqlmhtlky yywvvnpads sgitpkgldg prpsqkeiis
      661 lrafmllflk qlilkdrgvk edelqsilny lltmhedeni hdvlqllval msehpasmip
      721 afdqrngirv iykllaskse siwvqalkvl gyflkhlghk rkveimhths lftllgerlm
      781 lhtntvtvtt yntlyeilte qvctqvvhkp hpepdstvki qnpmilkvva tllknstpsa
      841 elmevrrlfl sdmiklfsns renrrcllqc svwqdwmfsl gyinpknsee qkitemvyni
      901 frillyhaik yewggwrvwv dtlsiahskv tyeahkeyla kmyeeyqrqe eenikkgkkg
      961 nvstisglss qttgakggme ireiedlsqs qspesetdyp vstdtrdllm atkvsddvlg
     1021 saerpgggvh vevhdllvdi kaekveatev klddmdlspe tlvtgengal veveslldnv
     1081 ysaaveklqn nvhgsvgiik kneekdngpl itladekdep ptnstsflfd kipsqeekll
     1141 pelssnhisi pnvqetqmhl gvnddlglla hmtgsvditc assiiedkef kihttsdgms
     1201 siserelass skgleyaemt attletessg sktvpsvdag siisdtersd dgkeagkeir
     1261 kiqtttttqa iqgrsvtqqd rdlrvdlgfr gmpmteeqrr qfspgprttm fripefkwsp
     1321 mhqrlltdll faletdvhvw rshstksvmd fvnsneniif vhntihlisq mvdniiiacg
     1381 gilpllsaat spttelenie vtqgmsaeta vtflsrlmam vdvlvfassl nfseieaekn
     1441 mssgglmrqc lrlvccvavr nclecrqrqr ervnktslig sktqdalqgv tasaatktpl
     1501 envpgnlspi kdpdrllqdv dinrlravvf rdvddskqaq flalavvyfi svlmvskyrd
     1561 ilepqretar sgsqagrnir qeinsptstv vvipsiphps lnhgflakli peqsfahsfy
     1621 ketptvfpen ikdketptpv ediqlessip htdsgigdeq mpnilngtdl etstgpdams
     1681 ellstlssev kksqesltes pseilkpass issisqskgi nvkeilkslv aapveiaecg
     1741 pdpipypdpa lkreahailp mqfhsfdrsv vvpvkkpppg slavttvgaa tagsglppgs
     1801 tpnifaatga tpksminttg avdsgsssss ssssfvngat sknlpavqtv apmpedsaen
     1861 msitaklera lekvapllre ifvdfapfls rtllgshgqe llieglvcmk sstsvvelvm
     1921 llcsqewqns iqknaglafi elinegrllc hamkdhivrv aneaefilnr qraedvhkha
     1981 efesqcaqya adrreeekmc dhlisaakhr dhvtanqlkq kilniltnkh gawgavshsq
     2041 lhdfwrldyw eddlrrrrrf vrnafgsths dallkaavey gteedvvksk ktfrsqavvn
     2101 qnaetelmle gdddavsllq ekeidnlagp vvlstpaqli apvvvakgtl sittteiyfe
     2161 vdeddlafkk idpkvlayte glhgkwmfse iravfsrryl lqntalevfm anrtsvmfnf
     2221 pdqatvkkvv yslprvgvgt syglpqarri slatprqlyk ssnmtqrwqr reisnfeylm
     2281 flntiagrty ndlnqypvfp wvltnyesee ldltlpgnfr dlskpigaln pkravfyaer
     2341 yetweddqtp pyhynthyst ststlawlvr iepfttffln andgkfdhpd rtfssvarsw
     2401 rnsqrdtsdv kelipefyyl pemfvnsngy nlgiredevv vndvdlppwa kkpedfvrin
     2461 rmalesefvs cqlhqwidli fgykqrgpea vralnvfhyl tyegsvnlds itdpvlream
     2521 eaqiqnfgqt psqlliephp prssamhlcf lpqsplmfkd qmqqdvimvl kfpsnspvth
     2581 vaantlphlt ipavvtvtcs rlfavnrwhn tvglrgapgy sldqahhlpi emdplianns
     2641 gvnkrqitdl vdqsiqinah cfvvtadnry ilicgfwdks frvystetgk ltqivfghwd
     2701 vvtclarses yiggdcyivs gsrdatlllw ywsgrhhiig dnpnssdypa pravltghdh
     2761 evvcvsvcae lglvisgake gpclvhtitg dllralegte nclyprlisv sseghciiyy
     2821 ergrfsnfsi ngkllaqmei ndstraills sdgqnlvtgg dngvvevwqa cdfkqlyiyp
     2881 gcdagiramd lshdqrtlit gmasgsivaf nidfnrwhye hqnry
//
LOCUS       XP_053912382            2914 aa            linear   VRT 09-MAR-2023
DEFINITION  neurobeachin isoform X8 [Cuculus canorus].
ACCESSION   XP_053912382
VERSION     XP_053912382.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056407.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2914
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2914
                     /product="neurobeachin isoform X8"
                     /calculated_mol_wt=324919
     Region          236..383
                     /region_name="Laminin_G_3"
                     /note="Concanavalin A-like lectin/glucanases superfamily;
                     pfam13385"
                     /db_xref="CDD:463865"
     Region          448..928
                     /region_name="DUF4704"
                     /note="Neurobeachin/BDCP, DUF4704 alpha solenoid region;
                     pfam15787"
                     /db_xref="CDD:464870"
     Region          1921..2087
                     /region_name="DUF1088"
                     /note="Neurobeachin-like, DUF1088; pfam06469"
                     /db_xref="CDD:461925"
     Region          2126..2223
                     /region_name="PH_BEACH"
                     /note="PH domain associated with Beige/BEACH; pfam14844"
                     /db_xref="CDD:434260"
     Region          2255..2531
                     /region_name="Beach"
                     /note="Beige/BEACH domain; pfam02138"
                     /db_xref="CDD:460459"
     Region          2631..2903
                     /region_name="NBCH_WD40"
                     /note="Neurobeachin beta propeller domain; pfam20426"
                     /db_xref="CDD:466575"
     Region          2692..2746
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2751..2786
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2791..2820
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2829..2867
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2875..2901
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..2914
                     /gene="NBEA"
                     /coded_by="XM_054056407.1:143..8887"
                     /db_xref="GeneID:104066160"
ORIGIN      
        1 masekavsep qpagllaagg vaamgelras gsgsvvlpag minptvpirn irmkfavlig
       61 liqvgevsnr divetvlnll vggefdlemn fiiqdaesit cmsellehcd vtcqaeiwsm
      121 ftailrksvr nlqtstevgl ieqvllkmst vddmiadllv dmlgvlasys itvkelkllf
      181 smlrgengiw prhavkllsv lnqmpqrhgp dtffnfpgcs aaaialppia kwpyqngftl
      241 ntwfrmdpln ninvdkdkpy lycfrtskgv gysahfvgnc livtslkskg kgfqhcvkyd
      301 fqprkwymis ivhiynrwrn seircyvngq lvsygdmawh vntndsydkc flgssetada
      361 nrvfcgqlga vyvftealnp aqifaihqlg pgykstfkfk sesdihlaeh hkqvlydgkl
      421 assiaftyna katdaqlcle sspkenpsif vhsphalmlq dvkaivthsi hsaihsiggi
      481 qvlfplfaql dnrqlhdsqv ettvcatlla flvellkssv amqeqmlggk gflvigylle
      541 kssrvhitra vleqflsfak yldglshgap llkqlcdhil fnpaiwihtp akvqlslyty
      601 lsaefigtat iyntirrvgt vlqlmhtlky yywvvnpads sgitpkgldg prpsqkeiis
      661 lrafmllflk qlilkdrgvk edelqsilny lltmhedeni hdvlqllval msehpasmip
      721 afdqrngirv iykllaskse siwvqalkvl gyflkhlghk rkveimhths lftllgerlm
      781 lhtntvtvtt yntlyeilte qvctqvvhkp hpepdstvki qnpmilkvva tllknstpsa
      841 elmevrrlfl sdmiklfsns renrrcllqc svwqdwmfsl gyinpknsee qkitemvyni
      901 frillyhaik yewggwrvwv dtlsiahskv tyeahkeyla kmyeeyqrqe eenikkgkkg
      961 nvstisglss qttgakggme ireiedlsqs qspesetdyp vstdtrdllm atkvsddvlg
     1021 saerpgggvh vevhdllvdi kaekveatev klddmdlspe tlvtgengal veveslldnv
     1081 ysaaveklqn nvhgsvgiik kneekdngpl itladekdep ptnstsflfd kipsqeekll
     1141 pelssnhisi pnvqetqmhl gvnddlglla hmtgsvditc assiiedkef kihttsdgms
     1201 siserelass skgleyaemt attletessg sktvpsvdag siisdtersd dgkeagkeir
     1261 kiqtttttqa iqgrsvtqqd rdlrvdlgfr gmpmteeqrr qfspgprttm fripefkwsp
     1321 mhqrlltdll faletdvhvw rshstksvmd fvnsneniif vhntihlisq mvdniiiacg
     1381 gilpllsaat sptgskvsia atelenievt qgmsaetavt flsrlmamvd vlvfasslnf
     1441 seieaeknms sgglmrqclr lvccvavrnc lecrqrqrer vnktsligsk tqdalqgvta
     1501 saatktplen vpgnlspikd pdrllqdvdi nrlravvfrd vddskqaqfl alavvyfisv
     1561 lmvskyrdil epqretarsg sqagrnirqe insptstetp tvfpenikdk etptpvediq
     1621 lessiphtds gigdeqmpni lngtdletst gpdamsells tlssevkksq esltespsei
     1681 lkpassissi sqskginvke ilkslvaapv eiaecgpdpi pypdpalkre ahailpmqfh
     1741 sfdrsvvvpv kkpppgslav ttvgaatags glppgstpni faatgatpks minttgavds
     1801 gsssssssss fvngatsknl pavqtvapmp edsaenmsit akleralekv apllreifvd
     1861 fapflsrtll gshgqellie glvcmkssts vvelvmllcs qewqnsiqkn aglafielin
     1921 egrllchamk dhivrvanea efilnrqrae dvhkhaefes qcaqyaadrr eeekmcdhli
     1981 saakhrdhvt anqlkqkiln iltnkhgawg avshsqlhdf wrldyweddl rrrrrfvrna
     2041 fgsthsdall kaaveygtee dvvkskktfr sqavvnqnae telmlegddd avsllqekei
     2101 dnlavlapfl prlftsrgpv vlstpaqlia pvvvakgtls ittteiyfev deddlafkki
     2161 dpkvlayteg lhgkwmfsei ravfsrryll qntalevfma nrtsvmfnfp dqatvkkvvy
     2221 slprvgvgts yglpqarris latprqlyks snmtqrwqrr eisnfeylmf lntiagrtyn
     2281 dlnqypvfpw vltnyeseel dltlpgnfrd lskpigalnp kravfyaery etweddqtpp
     2341 yhynthysts tstlawlvri epfttfflna ndgkfdhpdr tfssvarswr nsqrdtsdvk
     2401 elipefyylp emfvnsngyn lgiredevvv ndvdlppwak kpedfvrinr malesefvsc
     2461 qlhqwidlif gykqrgpeav ralnvfhylt yegsvnldsi tdpvlreame aqiqnfgqtp
     2521 sqlliephpp rssamhlcfl pqsplmfkdq mqqdvimvlk fpsnspvthv aantlphlti
     2581 pavvtvtcsr lfavnrwhnt vglrgapgys ldqahhlpie mdpliannsg vnkrqitdlv
     2641 dqsiqinahc fvvtadnryi licgfwdksf rvystetgkl tqivfghwdv vtclarsesy
     2701 iggdcyivsg srdatlllwy wsgrhhiigd npnssdypap ravltghdhe vvcvsvcael
     2761 glvisgakeg pclvhtitgd llralegten clyprlisvs seghciiyye rgrfsnfsin
     2821 gkllaqmein dstraillss dgqnlvtggd ngvvevwqac dfkqlyiypg cdagiramdl
     2881 shdqrtlitg masgsivafn idfnrwhyeh qnry
//
LOCUS       XP_053912388            2901 aa            linear   VRT 09-MAR-2023
DEFINITION  neurobeachin isoform X9 [Cuculus canorus].
ACCESSION   XP_053912388
VERSION     XP_053912388.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056413.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2901
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2901
                     /product="neurobeachin isoform X9"
                     /calculated_mol_wt=323420
     Region          236..383
                     /region_name="Laminin_G_3"
                     /note="Concanavalin A-like lectin/glucanases superfamily;
                     pfam13385"
                     /db_xref="CDD:463865"
     Region          448..928
                     /region_name="DUF4704"
                     /note="Neurobeachin/BDCP, DUF4704 alpha solenoid region;
                     pfam15787"
                     /db_xref="CDD:464870"
     Region          1921..2087
                     /region_name="DUF1088"
                     /note="Neurobeachin-like, DUF1088; pfam06469"
                     /db_xref="CDD:461925"
     Region          2113..2210
                     /region_name="PH_BEACH"
                     /note="PH domain associated with Beige/BEACH; pfam14844"
                     /db_xref="CDD:434260"
     Region          2242..2518
                     /region_name="Beach"
                     /note="Beige/BEACH domain; pfam02138"
                     /db_xref="CDD:460459"
     Region          2618..2890
                     /region_name="NBCH_WD40"
                     /note="Neurobeachin beta propeller domain; pfam20426"
                     /db_xref="CDD:466575"
     Region          2679..2733
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2738..2773
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2778..2807
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2816..2854
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2862..2888
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..2901
                     /gene="NBEA"
                     /coded_by="XM_054056413.1:143..8848"
                     /db_xref="GeneID:104066160"
ORIGIN      
        1 masekavsep qpagllaagg vaamgelras gsgsvvlpag minptvpirn irmkfavlig
       61 liqvgevsnr divetvlnll vggefdlemn fiiqdaesit cmsellehcd vtcqaeiwsm
      121 ftailrksvr nlqtstevgl ieqvllkmst vddmiadllv dmlgvlasys itvkelkllf
      181 smlrgengiw prhavkllsv lnqmpqrhgp dtffnfpgcs aaaialppia kwpyqngftl
      241 ntwfrmdpln ninvdkdkpy lycfrtskgv gysahfvgnc livtslkskg kgfqhcvkyd
      301 fqprkwymis ivhiynrwrn seircyvngq lvsygdmawh vntndsydkc flgssetada
      361 nrvfcgqlga vyvftealnp aqifaihqlg pgykstfkfk sesdihlaeh hkqvlydgkl
      421 assiaftyna katdaqlcle sspkenpsif vhsphalmlq dvkaivthsi hsaihsiggi
      481 qvlfplfaql dnrqlhdsqv ettvcatlla flvellkssv amqeqmlggk gflvigylle
      541 kssrvhitra vleqflsfak yldglshgap llkqlcdhil fnpaiwihtp akvqlslyty
      601 lsaefigtat iyntirrvgt vlqlmhtlky yywvvnpads sgitpkgldg prpsqkeiis
      661 lrafmllflk qlilkdrgvk edelqsilny lltmhedeni hdvlqllval msehpasmip
      721 afdqrngirv iykllaskse siwvqalkvl gyflkhlghk rkveimhths lftllgerlm
      781 lhtntvtvtt yntlyeilte qvctqvvhkp hpepdstvki qnpmilkvva tllknstpsa
      841 elmevrrlfl sdmiklfsns renrrcllqc svwqdwmfsl gyinpknsee qkitemvyni
      901 frillyhaik yewggwrvwv dtlsiahskv tyeahkeyla kmyeeyqrqe eenikkgkkg
      961 nvstisglss qttgakggme ireiedlsqs qspesetdyp vstdtrdllm atkvsddvlg
     1021 saerpgggvh vevhdllvdi kaekveatev klddmdlspe tlvtgengal veveslldnv
     1081 ysaaveklqn nvhgsvgiik kneekdngpl itladekdep ptnstsflfd kipsqeekll
     1141 pelssnhisi pnvqetqmhl gvnddlglla hmtgsvditc assiiedkef kihttsdgms
     1201 siserelass skgleyaemt attletessg sktvpsvdag siisdtersd dgkeagkeir
     1261 kiqtttttqa iqgrsvtqqd rdlrvdlgfr gmpmteeqrr qfspgprttm fripefkwsp
     1321 mhqrlltdll faletdvhvw rshstksvmd fvnsneniif vhntihlisq mvdniiiacg
     1381 gilpllsaat sptgskvsia atelenievt qgmsaetavt flsrlmamvd vlvfasslnf
     1441 seieaeknms sgglmrqclr lvccvavrnc lecrqrqrer vnktsligsk tqdalqgvta
     1501 saatktplen vpgnlspikd pdrllqdvdi nrlravvfrd vddskqaqfl alavvyfisv
     1561 lmvskyrdil epqretarsg sqagrnirqe insptstetp tvfpenikdk etptpvediq
     1621 lessiphtds gigdeqmpni lngtdletst gpdamsells tlssevkksq esltespsei
     1681 lkpassissi sqskginvke ilkslvaapv eiaecgpdpi pypdpalkre ahailpmqfh
     1741 sfdrsvvvpv kkpppgslav ttvgaatags glppgstpni faatgatpks minttgavds
     1801 gsssssssss fvngatsknl pavqtvapmp edsaenmsit akleralekv apllreifvd
     1861 fapflsrtll gshgqellie glvcmkssts vvelvmllcs qewqnsiqkn aglafielin
     1921 egrllchamk dhivrvanea efilnrqrae dvhkhaefes qcaqyaadrr eeekmcdhli
     1981 saakhrdhvt anqlkqkiln iltnkhgawg avshsqlhdf wrldyweddl rrrrrfvrna
     2041 fgsthsdall kaaveygtee dvvkskktfr sqavvnqnae telmlegddd avsllqekei
     2101 dnlagpvvls tpaqliapvv vakgtlsitt teiyfevded dlafkkidpk vlayteglhg
     2161 kwmfseirav fsrryllqnt alevfmanrt svmfnfpdqa tvkkvvyslp rvgvgtsygl
     2221 pqarrislat prqlykssnm tqrwqrreis nfeylmflnt iagrtyndln qypvfpwvlt
     2281 nyeseeldlt lpgnfrdlsk pigalnpkra vfyaeryetw eddqtppyhy nthyststst
     2341 lawlvriepf ttfflnandg kfdhpdrtfs svarswrnsq rdtsdvkeli pefyylpemf
     2401 vnsngynlgi redevvvndv dlppwakkpe dfvrinrmal esefvscqlh qwidlifgyk
     2461 qrgpeavral nvfhyltyeg svnldsitdp vlreameaqi qnfgqtpsql liephpprss
     2521 amhlcflpqs plmfkdqmqq dvimvlkfps nspvthvaan tlphltipav vtvtcsrlfa
     2581 vnrwhntvgl rgapgysldq ahhlpiemdp liannsgvnk rqitdlvdqs iqinahcfvv
     2641 tadnryilic gfwdksfrvy stetgkltqi vfghwdvvtc larsesyigg dcyivsgsrd
     2701 atlllwywsg rhhiigdnpn ssdypaprav ltghdhevvc vsvcaelglv isgakegpcl
     2761 vhtitgdllr alegtencly prlisvsseg hciiyyergr fsnfsingkl laqmeindst
     2821 raillssdgq nlvtggdngv vevwqacdfk qlyiypgcda giramdlshd qrtlitgmas
     2881 gsivafnidf nrwhyehqnr y
//
LOCUS       XP_053912398             739 aa            linear   VRT 09-MAR-2023
DEFINITION  neurobeachin isoform X10 [Cuculus canorus].
ACCESSION   XP_053912398
VERSION     XP_053912398.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056423.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..739
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..739
                     /product="neurobeachin isoform X10"
                     /calculated_mol_wt=83931
     Region          <1..48
                     /region_name="PH-like"
                     /note="Pleckstrin homology-like domain; cl17171"
                     /db_xref="CDD:473070"
     Region          80..356
                     /region_name="Beach"
                     /note="Beige/BEACH domain; pfam02138"
                     /db_xref="CDD:460459"
     Region          456..728
                     /region_name="NBCH_WD40"
                     /note="Neurobeachin beta propeller domain; pfam20426"
                     /db_xref="CDD:466575"
     Region          517..571
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          576..611
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          616..645
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          654..692
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          700..726
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..739
                     /gene="NBEA"
                     /coded_by="XM_054056423.1:289..2508"
                     /db_xref="GeneID:104066160"
ORIGIN      
        1 mfseiravfs rryllqntal evfmanrtsv mfnfpdqatv kkvvyslprv gvgtsyglpq
       61 arrislatpr qlykssnmtq rwqrreisnf eylmflntia grtyndlnqy pvfpwvltny
      121 eseeldltlp gnfrdlskpi galnpkravf yaeryetwed dqtppyhynt hystststla
      181 wlvriepftt fflnandgkf dhpdrtfssv arswrnsqrd tsdvkelipe fyylpemfvn
      241 sngynlgire devvvndvdl ppwakkpedf vrinrmales efvscqlhqw idlifgykqr
      301 gpeavralnv fhyltyegsv nldsitdpvl reameaqiqn fgqtpsqlli ephpprssam
      361 hlcflpqspl mfkdqmqqdv imvlkfpsns pvthvaantl phltipavvt vtcsrlfavn
      421 rwhntvglrg apgysldqah hlpiemdpli annsgvnkrq itdlvdqsiq inahcfvvta
      481 dnryilicgf wdksfrvyst etgkltqivf ghwdvvtcla rsesyiggdc yivsgsrdat
      541 lllwywsgrh hiigdnpnss dypapravlt ghdhevvcvs vcaelglvis gakegpclvh
      601 titgdllral egtenclypr lisvsseghc iiyyergrfs nfsingklla qmeindstra
      661 illssdgqnl vtggdngvve vwqacdfkql yiypgcdagi ramdlshdqr tlitgmasgs
      721 ivafnidfnr whyehqnry
//
LOCUS       XP_053912403            2946 aa            linear   VRT 09-MAR-2023
DEFINITION  neurobeachin isoform X11 [Cuculus canorus].
ACCESSION   XP_053912403
VERSION     XP_053912403.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056428.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2946
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2946
                     /product="neurobeachin isoform X11"
                     /calculated_mol_wt=328809
     Region          236..383
                     /region_name="Laminin_G_3"
                     /note="Concanavalin A-like lectin/glucanases superfamily;
                     pfam13385"
                     /db_xref="CDD:463865"
     Region          448..928
                     /region_name="DUF4704"
                     /note="Neurobeachin/BDCP, DUF4704 alpha solenoid region;
                     pfam15787"
                     /db_xref="CDD:464870"
     Region          1945..2111
                     /region_name="DUF1088"
                     /note="Neurobeachin-like, DUF1088; pfam06469"
                     /db_xref="CDD:461925"
     Region          2137..2234
                     /region_name="PH_BEACH"
                     /note="PH domain associated with Beige/BEACH; pfam14844"
                     /db_xref="CDD:434260"
     Region          2266..2563
                     /region_name="Beach"
                     /note="Beige/BEACH domain; pfam02138"
                     /db_xref="CDD:460459"
     Region          2663..2935
                     /region_name="NBCH_WD40"
                     /note="Neurobeachin beta propeller domain; pfam20426"
                     /db_xref="CDD:466575"
     Region          2724..2778
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2783..2818
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2823..2852
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2861..2899
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2907..2933
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..2946
                     /gene="NBEA"
                     /coded_by="XM_054056428.1:143..8983"
                     /db_xref="GeneID:104066160"
ORIGIN      
        1 masekavsep qpagllaagg vaamgelras gsgsvvlpag minptvpirn irmkfavlig
       61 liqvgevsnr divetvlnll vggefdlemn fiiqdaesit cmsellehcd vtcqaeiwsm
      121 ftailrksvr nlqtstevgl ieqvllkmst vddmiadllv dmlgvlasys itvkelkllf
      181 smlrgengiw prhavkllsv lnqmpqrhgp dtffnfpgcs aaaialppia kwpyqngftl
      241 ntwfrmdpln ninvdkdkpy lycfrtskgv gysahfvgnc livtslkskg kgfqhcvkyd
      301 fqprkwymis ivhiynrwrn seircyvngq lvsygdmawh vntndsydkc flgssetada
      361 nrvfcgqlga vyvftealnp aqifaihqlg pgykstfkfk sesdihlaeh hkqvlydgkl
      421 assiaftyna katdaqlcle sspkenpsif vhsphalmlq dvkaivthsi hsaihsiggi
      481 qvlfplfaql dnrqlhdsqv ettvcatlla flvellkssv amqeqmlggk gflvigylle
      541 kssrvhitra vleqflsfak yldglshgap llkqlcdhil fnpaiwihtp akvqlslyty
      601 lsaefigtat iyntirrvgt vlqlmhtlky yywvvnpads sgitpkgldg prpsqkeiis
      661 lrafmllflk qlilkdrgvk edelqsilny lltmhedeni hdvlqllval msehpasmip
      721 afdqrngirv iykllaskse siwvqalkvl gyflkhlghk rkveimhths lftllgerlm
      781 lhtntvtvtt yntlyeilte qvctqvvhkp hpepdstvki qnpmilkvva tllknstpsa
      841 elmevrrlfl sdmiklfsns renrrcllqc svwqdwmfsl gyinpknsee qkitemvyni
      901 frillyhaik yewggwrvwv dtlsiahskv tyeahkeyla kmyeeyqrqe eenikkgkkg
      961 nvstisglss qttgakggme ireiedlsqs qspesetdyp vstdtrdllm atkvsddvlg
     1021 saerpgggvh vevhdllvdi kaekveatev klddmdlspe tlvtgengal veveslldnv
     1081 ysaaveklqn nvhgsvgiik kneekdngpl itladekdep ptnstsflfd kipsqeekll
     1141 pelssnhisi pnvqetqmhl gvnddlglla hmtgsvditc assiiedkef kihttsdgms
     1201 siserelass skgleyaemt attletessg sktvpsvdag siisdtersd dgkeagkeir
     1261 kiqtttttqa iqgrsvtqqd rdlrvdlgfr gmpmteeqrr qfspgprttm fripefkwsp
     1321 mhqrlltdll faletdvhvw rshstksvmd fvnsneniif vhntihlisq mvdniiiacg
     1381 gilpllsaat spttelenie vtqgmsaeta vtflsrlmam vdvlvfassl nfseieaekn
     1441 mssgglmrqc lrlvccvavr nclecrqrqr ervnktslig sktqdalqgv tasaatktpl
     1501 envpgnlspi kdpdrllqdv dinrlravvf rdvddskqaq flalavvyfi svlmvskyrd
     1561 ilepqretar sgsqagrnir qeinsptstv vvipsiphps lnhgflakli peqsfahsfy
     1621 ketptvfpen ikdketptpv ediqlessip htdsgigdeq mpnilngtdl etstgpdams
     1681 ellstlssev kksqesltes pseilkpass issisqskgi nvkeilkslv aapveiaecg
     1741 pdpipypdpa lkreahailp mqfhsfdrsv vvpvkkpppg slavttvgaa tagsglppgs
     1801 tpnifaatga tpksminttg avdsgsssss ssssfvngat sknlpavqtv apmpedsaen
     1861 msitaklera lekvapllre ifvdfapfls rtllgshgqe llieglvcmk sstsvvelvm
     1921 llcsqewqns iqknaglafi elinegrllc hamkdhivrv aneaefilnr qraedvhkha
     1981 efesqcaqya adrreeekmc dhlisaakhr dhvtanqlkq kilniltnkh gawgavshsq
     2041 lhdfwrldyw eddlrrrrrf vrnafgsths dallkaavey gteedvvksk ktfrsqavvn
     2101 qnaetelmle gdddavsllq ekeidnlagp vvlstpaqli apvvvakgtl sittteiyfe
     2161 vdeddlafkk idpkvlayte glhgkwmfse iravfsrryl lqntalevfm anrtsvmfnf
     2221 pdqatvkkvv yslprvgvgt syglpqarri slatprqlyk ssnmtqrwqr reisnfeylm
     2281 flntiagrty ndlnqypvfp wvltnyesee ldltlpgnfr dlskpigaln pkravfyaer
     2341 yetweddqtp pyhynthyst ststlawlvr iepfttffln andgkfdhpd rtfssvarsw
     2401 rnsqrdtsdv kelipefyyl pemfvnsngy nlgiredevv vndvdlppwa kkpedfvrin
     2461 rmalesefvs cqlhqwidli fgykqrgpea vralnvfhyl tyegsvnlds itdpvlreip
     2521 eayfirdpht flltknfika meaqiqnfgq tpsqllieph pprssamhlc flpqsplmfk
     2581 dqmqqdvimv lkfpsnspvt hvaantlphl tipavvtvtc srlfavnrwh ntvglrgapg
     2641 ysldqahhlp iemdpliann sgvnkrqitd lvdqsiqina hcfvvtadnr yilicgfwdk
     2701 sfrvystetg kltqivfghw dvvtclarse syiggdcyiv sgsrdatlll wywsgrhhii
     2761 gdnpnssdyp apravltghd hevvcvsvca elglvisgak egpclvhtit gdllralegt
     2821 enclyprlis vsseghciiy yergrfsnfs ingkllaqme indstraill ssdgqnlvtg
     2881 gdngvvevwq acdfkqlyiy pgcdagiram dlshdqrtli tgmasgsiva fnidfnrwhy
     2941 ehqnry
//
LOCUS       XP_053912407            2920 aa            linear   VRT 09-MAR-2023
DEFINITION  neurobeachin isoform X12 [Cuculus canorus].
ACCESSION   XP_053912407
VERSION     XP_053912407.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056432.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2920
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2920
                     /product="neurobeachin isoform X12"
                     /calculated_mol_wt=325674
     Region          236..383
                     /region_name="Laminin_G_3"
                     /note="Concanavalin A-like lectin/glucanases superfamily;
                     pfam13385"
                     /db_xref="CDD:463865"
     Region          448..928
                     /region_name="DUF4704"
                     /note="Neurobeachin/BDCP, DUF4704 alpha solenoid region;
                     pfam15787"
                     /db_xref="CDD:464870"
     Region          1945..2111
                     /region_name="DUF1088"
                     /note="Neurobeachin-like, DUF1088; pfam06469"
                     /db_xref="CDD:461925"
     Region          2137..2234
                     /region_name="PH_BEACH"
                     /note="PH domain associated with Beige/BEACH; pfam14844"
                     /db_xref="CDD:434260"
     Region          2266..2542
                     /region_name="Beach"
                     /note="Beige/BEACH domain; pfam02138"
                     /db_xref="CDD:460459"
     Region          2637..2909
                     /region_name="NBCH_WD40"
                     /note="Neurobeachin beta propeller domain; pfam20426"
                     /db_xref="CDD:466575"
     Region          2698..2752
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2757..2792
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2797..2826
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2835..2873
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          2881..2907
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..2920
                     /gene="NBEA"
                     /coded_by="XM_054056432.1:143..8905"
                     /db_xref="GeneID:104066160"
ORIGIN      
        1 masekavsep qpagllaagg vaamgelras gsgsvvlpag minptvpirn irmkfavlig
       61 liqvgevsnr divetvlnll vggefdlemn fiiqdaesit cmsellehcd vtcqaeiwsm
      121 ftailrksvr nlqtstevgl ieqvllkmst vddmiadllv dmlgvlasys itvkelkllf
      181 smlrgengiw prhavkllsv lnqmpqrhgp dtffnfpgcs aaaialppia kwpyqngftl
      241 ntwfrmdpln ninvdkdkpy lycfrtskgv gysahfvgnc livtslkskg kgfqhcvkyd
      301 fqprkwymis ivhiynrwrn seircyvngq lvsygdmawh vntndsydkc flgssetada
      361 nrvfcgqlga vyvftealnp aqifaihqlg pgykstfkfk sesdihlaeh hkqvlydgkl
      421 assiaftyna katdaqlcle sspkenpsif vhsphalmlq dvkaivthsi hsaihsiggi
      481 qvlfplfaql dnrqlhdsqv ettvcatlla flvellkssv amqeqmlggk gflvigylle
      541 kssrvhitra vleqflsfak yldglshgap llkqlcdhil fnpaiwihtp akvqlslyty
      601 lsaefigtat iyntirrvgt vlqlmhtlky yywvvnpads sgitpkgldg prpsqkeiis
      661 lrafmllflk qlilkdrgvk edelqsilny lltmhedeni hdvlqllval msehpasmip
      721 afdqrngirv iykllaskse siwvqalkvl gyflkhlghk rkveimhths lftllgerlm
      781 lhtntvtvtt yntlyeilte qvctqvvhkp hpepdstvki qnpmilkvva tllknstpsa
      841 elmevrrlfl sdmiklfsns renrrcllqc svwqdwmfsl gyinpknsee qkitemvyni
      901 frillyhaik yewggwrvwv dtlsiahskv tyeahkeyla kmyeeyqrqe eenikkgkkg
      961 nvstisglss qttgakggme ireiedlsqs qspesetdyp vstdtrdllm atkvsddvlg
     1021 saerpgggvh vevhdllvdi kaekveatev klddmdlspe tlvtgengal veveslldnv
     1081 ysaaveklqn nvhgsvgiik kneekdngpl itladekdep ptnstsflfd kipsqeekll
     1141 pelssnhisi pnvqetqmhl gvnddlglla hmtgsvditc assiiedkef kihttsdgms
     1201 siserelass skgleyaemt attletessg sktvpsvdag siisdtersd dgkeagkeir
     1261 kiqtttttqa iqgrsvtqqd rdlrvdlgfr gmpmteeqrr qfspgprttm fripefkwsp
     1321 mhqrlltdll faletdvhvw rshstksvmd fvnsneniif vhntihlisq mvdniiiacg
     1381 gilpllsaat spttelenie vtqgmsaeta vtflsrlmam vdvlvfassl nfseieaekn
     1441 mssgglmrqc lrlvccvavr nclecrqrqr ervnktslig sktqdalqgv tasaatktpl
     1501 envpgnlspi kdpdrllqdv dinrlravvf rdvddskqaq flalavvyfi svlmvskyrd
     1561 ilepqretar sgsqagrnir qeinsptstv vvipsiphps lnhgflakli peqsfahsfy
     1621 ketptvfpen ikdketptpv ediqlessip htdsgigdeq mpnilngtdl etstgpdams
     1681 ellstlssev kksqesltes pseilkpass issisqskgi nvkeilkslv aapveiaecg
     1741 pdpipypdpa lkreahailp mqfhsfdrsv vvpvkkpppg slavttvgaa tagsglppgs
     1801 tpnifaatga tpksminttg avdsgsssss ssssfvngat sknlpavqtv apmpedsaen
     1861 msitaklera lekvapllre ifvdfapfls rtllgshgqe llieglvcmk sstsvvelvm
     1921 llcsqewqns iqknaglafi elinegrllc hamkdhivrv aneaefilnr qraedvhkha
     1981 efesqcaqya adrreeekmc dhlisaakhr dhvtanqlkq kilniltnkh gawgavshsq
     2041 lhdfwrldyw eddlrrrrrf vrnafgsths dallkaavey gteedvvksk ktfrsqavvn
     2101 qnaetelmle gdddavsllq ekeidnlagp vvlstpaqli apvvvakgtl sittteiyfe
     2161 vdeddlafkk idpkvlayte glhgkwmfse iravfsrryl lqntalevfm anrtsvmfnf
     2221 pdqatvkkvv yslprvgvgt syglpqarri slatprqlyk ssnmtqrwqr reisnfeylm
     2281 flntiagrty ndlnqypvfp wvltnyesee ldltlpgnfr dlskpigaln pkravfyaer
     2341 yetweddqtp pyhynthyst ststlawlvr iepfttffln andgkfdhpd rtfssvarsw
     2401 rnsqrdtsdv kelipefyyl pemfvnsngy nlgiredevv vndvdlppwa kkpedfvrin
     2461 rmalesefvs cqlhqwidli fgykqrgpea vralnvfhyl tyegsvnlds itdpvlream
     2521 eaqiqnfgqt psqlliephp prssamhlsp lmfkdqmqqd vimvlkfpsn spvthvaant
     2581 lphltipavv tvtcsrlfav nrwhntvglr gapgysldqa hhlpiemdpl iannsgvnkr
     2641 qitdlvdqsi qinahcfvvt adnryilicg fwdksfrvys tetgkltqiv fghwdvvtcl
     2701 arsesyiggd cyivsgsrda tlllwywsgr hhiigdnpns sdypapravl tghdhevvcv
     2761 svcaelglvi sgakegpclv htitgdllra legtenclyp rlisvssegh ciiyyergrf
     2821 snfsingkll aqmeindstr aillssdgqn lvtggdngvv evwqacdfkq lyiypgcdag
     2881 iramdlshdq rtlitgmasg sivafnidfn rwhyehqnry
//
LOCUS       XP_009566975             359 aa            linear   VRT 09-MAR-2023
DEFINITION  putative nucleotidyltransferase MAB21L1 [Cuculus canorus].
ACCESSION   XP_009566975
VERSION     XP_009566975.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568680.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..359
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..359
                     /product="putative nucleotidyltransferase MAB21L1"
                     /calculated_mol_wt=40825
     Region          62..241
                     /region_name="Mab-21"
                     /note="Mab-21 protein nucleotidyltransferase domain;
                     pfam03281"
                     /db_xref="CDD:460873"
     Region          246..344
                     /region_name="Mab-21_C"
                     /note="Mab-21 protein HhH/H2TH-like domain; pfam20266"
                     /db_xref="CDD:466416"
     CDS             1..359
                     /gene="MAB21L1"
                     /coded_by="XM_009568680.2:207..1286"
                     /db_xref="GeneID:104066118"
ORIGIN      
        1 miaaqaklvy hlnkyynekc qarkaaiakt irevckvvsd vlkevevqep rfisslnemd
       61 nryeglevis ptefevvlyl nqmgvfnfvd dgslpgcavl klsdgrkrsm slwvefitas
      121 gylsarkirs rfqtlvaqav dkcsyrdvvk mvadtsevkl rirdryvvqi tpafkctgiw
      181 prsaahwplp hipwpgpnrv aevkaegfnl lskechslag kqssaesdaw vlqfaeaenr
      241 lqmggcrkkc lsilktlrdr hlelpgqpln nyhmktlvsy ecekhpresd wdesclgdrl
      301 ngillqlisc lqcrrcphyf lpnldlfqgk phsalenaak qtwrlareil tnpkslekl
//
LOCUS       XP_053912424             711 aa            linear   VRT 09-MAR-2023
DEFINITION  1,4-alpha-glucan-branching enzyme isoform X1 [Cuculus canorus].
ACCESSION   XP_053912424
VERSION     XP_053912424.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056449.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..711
                     /product="1,4-alpha-glucan-branching enzyme isoform X1"
                     /calculated_mol_wt=82152
     Region          21..703
                     /region_name="PLN02447"
                     /note="1,4-alpha-glucan-branching enzyme"
                     /db_xref="CDD:215246"
     CDS             1..711
                     /gene="GBE1"
                     /coded_by="XM_054056449.1:106..2241"
                     /db_xref="GeneID:104056031"
ORIGIN      
        1 maapgactqp pqppklqqll erdpylapfe tdfqrryslf ynrlknieen eggldkfsks
       61 yktfgvnqfv dggiyckewa pgaeavflag dfngwnpfsh pykkmeygkw elfippgqdg
      121 capvphgskl kvviraqnge llyrispwar yvvrdedkvn ydwvhwnppq syihkhpspk
      181 rlkslriyes hvgiaspegk vasyknftyn vlprikdlgy ncvqlmaime hayyasfgyq
      241 vtsffaassr ygtpddlkem idvahsmgit vlldvvhsha sknsedglnk fdgtdscffh
      301 sghkgnhqlw dsrlfdyanw evlrfllsnl rmwiedyrfd gfrfdgvtsm lyhhhgigtg
      361 fsgdyneyfg lhvdedalcy lmlanhminf lhpecitiae dvsgmpalcr pvaeggggfd
      421 yrlamaipdk wiqiikelkd edwnmgnivh tltnrryeek yiayaeshdq alvgdktlaf
      481 rlmdaemytn msvlspltpv idrgiqlhkm irlithalgg esylnfmgne fghpewldfp
      541 rkgnnesyhy arrqfnlted hllryrflna fdrdmnkwee kfgwlasppg yvsekhesnk
      601 viaferagll fvfnfhpyqs yvdyrvgiet pgkykillds daaeyggher ldhsteyfse
      661 eyphnyrpns lmqsnsqttf sqhprrchnh hikvyipsrv aivlqntdip k
//
LOCUS       XP_053912430             710 aa            linear   VRT 09-MAR-2023
DEFINITION  1,4-alpha-glucan-branching enzyme isoform X2 [Cuculus canorus].
ACCESSION   XP_053912430
VERSION     XP_053912430.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056455.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..710
                     /product="1,4-alpha-glucan-branching enzyme isoform X2"
                     /calculated_mol_wt=82024
     Region          21..702
                     /region_name="PLN02447"
                     /note="1,4-alpha-glucan-branching enzyme"
                     /db_xref="CDD:215246"
     CDS             1..710
                     /gene="GBE1"
                     /coded_by="XM_054056455.1:106..2238"
                     /db_xref="GeneID:104056031"
ORIGIN      
        1 maapgactqp pqppklqqll erdpylapfe tdfqrryslf ynrlknieen eggldkfsks
       61 yktfgvnqfv dggiyckewa pgaeavflag dfngwnpfsh pykkmeygkw elfippgqdg
      121 capvphgskl kvviraqnge llyrispwar yvvrdedkvn ydwvhwnppq syihkhpspk
      181 rlkslriyes hvgiaspegk vasyknftyn vlprikdlgy ncvqlmaime hayyasfgyq
      241 vtsffaassr ygtpddlkem idvahsmgit vlldvvhsha sknsedglnk fdgtdscffh
      301 sghkgnhqlw dsrlfdyanw evlrfllsnl rmwiedyrfd gfrfdgvtsm lyhhhgigtg
      361 fsgdyneyfg lhvdedalcy lmlanhminf lhpecitiae dvsgmpalcr pvaeggggfd
      421 yrlamaipdk wiqiikelkd edwnmgnivh tltnrryeek yiayaeshdq alvgdktlaf
      481 rlmdaemytn msvlspltpv idrgiqlhkm irlithalgg esylnfmgne fghpewldfp
      541 rkgnnesyhy arrqfnlted hllryrflna fdrdmnkwee kfgwlasppg yvsekhesnk
      601 viaferagll fvfnfhpyqs yvdyrvgiet pgkykillds daaeyggher ldhsteyfse
      661 eyphnyrpns lmsnsqttfs qhprrchnhh ikvyipsrva ivlqntdipk
//
LOCUS       XP_053912437             690 aa            linear   VRT 09-MAR-2023
DEFINITION  1,4-alpha-glucan-branching enzyme isoform X3 [Cuculus canorus].
ACCESSION   XP_053912437
VERSION     XP_053912437.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056462.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..690
                     /product="1,4-alpha-glucan-branching enzyme isoform X3"
                     /calculated_mol_wt=79626
     Region          21..682
                     /region_name="PLN02447"
                     /note="1,4-alpha-glucan-branching enzyme"
                     /db_xref="CDD:215246"
     CDS             1..690
                     /gene="GBE1"
                     /coded_by="XM_054056462.1:105..2177"
                     /db_xref="GeneID:104056031"
ORIGIN      
        1 maapgactqp pqppklqqll erdpylapfe tdfqrryslf ynrlknieen eggldkfsks
       61 yktfgvnqfv dggiyckewa pgaeavflag dfngwnpfsh pykkmeygkw elfippgqdg
      121 capvphgskl kvviraqnge llyrispwar yvvrdedkvn ydwvhwnppq syihkhpspk
      181 rlkslriyes hvgiaspegk vasyknftyn vlprikdlgy ncvqlmaime hayyasfgyq
      241 vtsffaassr ygtpddlkem idvahsmgit vlldvvhsha sknsedglnk fdgtdscffh
      301 sghkgnhqlw dsrlfdyanw evlrfllsnl rmwiedyrfd gfrfdgvtsm lyhhhgigtg
      361 fsgdyneyfg lhvdedalcy lmlanhminf lhpecitiae dvsgmpalcr pvaeggggfd
      421 yrlamaipdk wiqiikelkd edwnmgnivh tltnrryeek yiayaeshdq alvgdktlaf
      481 rlmdaemytn msvlspltpv idrgiqlhkm irlithalgg esylnfmgne fghpewldfp
      541 rkgnnesyhy arrqfnlted hllryrflna fdrdmnkwee kfgwlasppg yvsekhesnk
      601 viaferagll fvfnfhpyqs yvdyrvgiet pgkykillds daaeyggher ldhsteyfse
      661 eyphnyrpns lmvyipsrva ivlqntdipk
//
LOCUS       XP_053912453            1090 aa            linear   VRT 09-MAR-2023
DEFINITION  protein phosphatase 1 regulatory subunit 12A isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912453
VERSION     XP_053912453.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056478.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1090
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1090
                     /product="protein phosphatase 1 regulatory subunit 12A
                     isoform X1"
                     /calculated_mol_wt=121502
     Region          <44..298
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(49..51,53..54,58,61,70,72,74,78..79,82..84,86..87,
                     91,94,103,105,107,111..112,115..117,119..120,124,127,136)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          72..103
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          105..136
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          138..229
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          231..262
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          702..758
                     /region_name="IPD_MYPT1"
                     /note="inhibitory phosphorylation domain of myosin
                     phosphatase targeting subunit 1(MYPT1); cd21944"
                     /db_xref="CDD:412019"
     Region          975..1079
                     /region_name="PRKG1_interact"
                     /note="cGMP-dependent protein kinase interacting domain;
                     pfam15898"
                     /db_xref="CDD:464927"
     CDS             1..1090
                     /gene="PPP1R12A"
                     /coded_by="XM_054056478.1:141..3413"
                     /db_xref="GeneID:104061152"
ORIGIN      
        1 mkmadakqkr neqlkrwigs etdleppvvk rkktkvkfdd gavflaacss gdteevlrll
       61 ergadinyan vdgltalhqa ciddnvdmvk flvenganin qpdnegwipl haaascgyld
      121 iaeylisqga hvgavnsegd tpldiaeeea meellqnevn rqgvdieaar keeerimlrd
      181 arqwlnsghi ndvrhaksgg talhvaaakg ytevlklliq arydvnikdy dgwtplhaaa
      241 hwgkeeacri lvenlcdmea vnkvgqtafd vadedilgyl eelqkkqnll hsekrekksp
      301 liestanmdn nqtqktfknk etlimeqekn assieslehe kadeeeegkk desscsseee
      361 edddseseae tdktktlaav tnnanttstq sasvavtaps vaggqgapts pvkkydsipp
      421 impvmesvdp aswrqglrkt gialvpnkge ksmfptsttk vspkeeerkd espaswrlcl
      481 rktgsygala eitaskeaqk ekdsagvmrs assprlsssl dnkekekdgk gtrlayvapt
      541 iprrlastsd idekenrdss assirggssy trrkweedvk knslnegpas lntsyqrsgs
      601 fgrrqddlis ssvpstastv tssaglqktl ptstntttks ttgstsagvq sstsnrlwae
      661 dstekekdsv ptavtvpvap svvnatattt amttatsgtv sstsevrerr rsyltpvrde
      721 esesqrkars rqarqsrrst qgvtltdlqe aektigrsrp trtreqesee kekeekekqd
      781 kekqeekkes etkeddyrqr ysrtaeepyh ryrptststt ssstsslsts tsslstssql
      841 nrpnsligit saysrsgtke sereggkkee ekeedksqpk sirerrrpre krrstgvsfw
      901 tqdsdeneqe hqsdseegtn kketqsdsls rydtgslsvs sgdrydsaqg rsgsqsyled
      961 rkpycsrlek edstdfkkly eqilaenekl kaqlhdtnme ltdlklqlek ttqrqerfad
     1021 rsllemekre rralerrise meeelknlqq ikqiqslrhi nerlvtenra ltrvvaklsg
     1081 syrqlrsvdl
//
LOCUS       XP_053912458            1089 aa            linear   VRT 09-MAR-2023
DEFINITION  protein phosphatase 1 regulatory subunit 12A isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912458
VERSION     XP_053912458.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056483.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1089
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1089
                     /product="protein phosphatase 1 regulatory subunit 12A
                     isoform X2"
                     /calculated_mol_wt=121373
     Region          <44..298
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(49..51,53..54,58,61,70,72,74,78..79,82..84,86..87,
                     91,94,103,105,107,111..112,115..117,119..120,124,127,136)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          72..103
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          105..136
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          138..229
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          231..262
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          702..758
                     /region_name="IPD_MYPT1"
                     /note="inhibitory phosphorylation domain of myosin
                     phosphatase targeting subunit 1(MYPT1); cd21944"
                     /db_xref="CDD:412019"
     Region          974..1078
                     /region_name="PRKG1_interact"
                     /note="cGMP-dependent protein kinase interacting domain;
                     pfam15898"
                     /db_xref="CDD:464927"
     CDS             1..1089
                     /gene="PPP1R12A"
                     /coded_by="XM_054056483.1:141..3410"
                     /db_xref="GeneID:104061152"
ORIGIN      
        1 mkmadakqkr neqlkrwigs etdleppvvk rkktkvkfdd gavflaacss gdteevlrll
       61 ergadinyan vdgltalhqa ciddnvdmvk flvenganin qpdnegwipl haaascgyld
      121 iaeylisqga hvgavnsegd tpldiaeeea meellqnevn rqgvdieaar keeerimlrd
      181 arqwlnsghi ndvrhaksgg talhvaaakg ytevlklliq arydvnikdy dgwtplhaaa
      241 hwgkeeacri lvenlcdmea vnkvgqtafd vadedilgyl eelqkkqnll hsekrekksp
      301 liestanmdn nqtqktfknk etlimeqekn assieslehe kadeeeegkk desscsseee
      361 edddseseae tdktktlaav tnnanttstq sasvavtaps vaggqgapts pvkkydsipp
      421 impvmesvdp aswrqglrkt gialvpnkge ksmfptsttk vspkeeerkd espaswrlcl
      481 rktgsygala eitaskeaqk ekdsagvmrs assprlsssl dnkekekdgk gtrlayvapt
      541 iprrlastsd idekenrdss assirggssy trrkweedvk knslnegpas lntsyqrsgs
      601 fgrrqddlis ssvpstastv tssaglqktl ptstntttks ttgstsagvq sstsnrlwae
      661 dstekekdsv ptavtvpvap svvnatattt amttatsgtv sstsevrerr rsyltpvrde
      721 esesqrkars rqarqsrrst qgvtltdlqe aektigrsrp trtreqesee kekeekekqd
      781 kekqeekkes etkeddyrqr ysrtaeepyh ryrptststt ssstsslsts tsslstssql
      841 nrpnsligit saysrsgtke serggkkeee keedksqpks irerrrprek rrstgvsfwt
      901 qdsdeneqeh qsdseegtnk ketqsdslsr ydtgslsvss gdrydsaqgr sgsqsyledr
      961 kpycsrleke dstdfkklye qilaeneklk aqlhdtnmel tdlklqlekt tqrqerfadr
     1021 sllemekrer ralerrisem eeelknlqqi kqiqslrhin erlvtenral trvvaklsgs
     1081 yrqlrsvdl
//
LOCUS       XP_053912469            1074 aa            linear   VRT 09-MAR-2023
DEFINITION  protein phosphatase 1 regulatory subunit 12A isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053912469
VERSION     XP_053912469.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056494.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1074
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1074
                     /product="protein phosphatase 1 regulatory subunit 12A
                     isoform X3"
                     /calculated_mol_wt=119523
     Region          <44..298
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(49..51,53..54,58,61,70,72,74,78..79,82..84,86..87,
                     91,94,103,105,107,111..112,115..117,119..120,124,127,136)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          72..103
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          105..136
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          138..229
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          231..262
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          702..758
                     /region_name="IPD_MYPT1"
                     /note="inhibitory phosphorylation domain of myosin
                     phosphatase targeting subunit 1(MYPT1); cd21944"
                     /db_xref="CDD:412019"
     Region          975..1074
                     /region_name="PRKG1_interact"
                     /note="cGMP-dependent protein kinase interacting domain;
                     pfam15898"
                     /db_xref="CDD:464927"
     CDS             1..1074
                     /gene="PPP1R12A"
                     /coded_by="XM_054056494.1:139..3363"
                     /db_xref="GeneID:104061152"
ORIGIN      
        1 mkmadakqkr neqlkrwigs etdleppvvk rkktkvkfdd gavflaacss gdteevlrll
       61 ergadinyan vdgltalhqa ciddnvdmvk flvenganin qpdnegwipl haaascgyld
      121 iaeylisqga hvgavnsegd tpldiaeeea meellqnevn rqgvdieaar keeerimlrd
      181 arqwlnsghi ndvrhaksgg talhvaaakg ytevlklliq arydvnikdy dgwtplhaaa
      241 hwgkeeacri lvenlcdmea vnkvgqtafd vadedilgyl eelqkkqnll hsekrekksp
      301 liestanmdn nqtqktfknk etlimeqekn assieslehe kadeeeegkk desscsseee
      361 edddseseae tdktktlaav tnnanttstq sasvavtaps vaggqgapts pvkkydsipp
      421 impvmesvdp aswrqglrkt gialvpnkge ksmfptsttk vspkeeerkd espaswrlcl
      481 rktgsygala eitaskeaqk ekdsagvmrs assprlsssl dnkekekdgk gtrlayvapt
      541 iprrlastsd idekenrdss assirggssy trrkweedvk knslnegpas lntsyqrsgs
      601 fgrrqddlis ssvpstastv tssaglqktl ptstntttks ttgstsagvq sstsnrlwae
      661 dstekekdsv ptavtvpvap svvnatattt amttatsgtv sstsevrerr rsyltpvrde
      721 esesqrkars rqarqsrrst qgvtltdlqe aektigrsrp trtreqesee kekeekekqd
      781 kekqeekkes etkeddyrqr ysrtaeepyh ryrptststt ssstsslsts tsslstssql
      841 nrpnsligit saysrsgtke sereggkkee ekeedksqpk sirerrrpre krrstgvsfw
      901 tqdsdeneqe hqsdseegtn kketqsdsls rydtgslsvs sgdrydsaqg rsgsqsyled
      961 rkpycsrlek edstdfkkly eqilaenekl kaqlhdtnme ltdlklqlek ttqrqerfad
     1021 rsllemekre rralerrise meeelkmlpd lkadnqrlkd engalirvis klsk
//
LOCUS       XP_053912472            1051 aa            linear   VRT 09-MAR-2023
DEFINITION  protein phosphatase 1 regulatory subunit 12A isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053912472
VERSION     XP_053912472.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056497.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1051
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1051
                     /product="protein phosphatase 1 regulatory subunit 12A
                     isoform X4"
                     /calculated_mol_wt=117220
     Region          <44..298
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(49..51,53..54,58,61,70,72,74,78..79,82..84,86..87,
                     91,94,103,105,107,111..112,115..117,119..120,124,127,136)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          72..103
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          105..136
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          138..229
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          231..262
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          663..719
                     /region_name="IPD_MYPT1"
                     /note="inhibitory phosphorylation domain of myosin
                     phosphatase targeting subunit 1(MYPT1); cd21944"
                     /db_xref="CDD:412019"
     Region          936..1040
                     /region_name="PRKG1_interact"
                     /note="cGMP-dependent protein kinase interacting domain;
                     pfam15898"
                     /db_xref="CDD:464927"
     CDS             1..1051
                     /gene="PPP1R12A"
                     /coded_by="XM_054056497.1:139..3294"
                     /db_xref="GeneID:104061152"
ORIGIN      
        1 mkmadakqkr neqlkrwigs etdleppvvk rkktkvkfdd gavflaacss gdteevlrll
       61 ergadinyan vdgltalhqa ciddnvdmvk flvenganin qpdnegwipl haaascgyld
      121 iaeylisqga hvgavnsegd tpldiaeeea meellqnevn rqgvdieaar keeerimlrd
      181 arqwlnsghi ndvrhaksgg talhvaaakg ytevlklliq arydvnikdy dgwtplhaaa
      241 hwgkeeacri lvenlcdmea vnkvgqtafd vadedilgyl eelqkkqnll hsekrekksp
      301 liestanmdn nqtqktfknk etlimeqekn assieslehe kadeeeegkk desscsseee
      361 edddseseae tdktktlaav tnnanttstq sasvavtaps vaggqgapts pvkkfptstt
      421 kvspkeeerk despaswrlc lrktgsygal aeitaskeaq kekdsagvmr sassprlsss
      481 ldnkekekdg kgtrlayvap tiprrlasts didekenrds sassirggss ytrrkweedv
      541 kknslnegpa slntsyqrsg sfgrrqddli sssvpstast vtssaglqkt lptstntttk
      601 sttgstsagv qsstsnrlwa edstekekds vptavtvpva psvvnatatt tamttatsgt
      661 vsstsevrer rrsyltpvrd eesesqrkar srqarqsrrs tqgvtltdlq eaektigrsr
      721 ptrtreqese ekekeekekq dkekqeekke setkeddyrq rysrtaeepy hryrptstst
      781 tssstsslst stsslstssq lnrpnsligi tsaysrsgtk esereggkke eekeedksqp
      841 ksirerrrpr ekrrstgvsf wtqdsdeneq ehqsdseegt nkketqsdsl srydtgslsv
      901 ssgdrydsaq grsgsqsyle drkpycsrle kedstdfkkl yeqilaenek lkaqlhdtnm
      961 eltdlklqle kttqrqerfa drsllemekr erralerris emeeelknlq qikqiqslrh
     1021 inerlvtenr altrvvakls gsyrqlrsvd l
//
LOCUS       XP_053912480            1049 aa            linear   VRT 09-MAR-2023
DEFINITION  protein phosphatase 1 regulatory subunit 12A isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053912480
VERSION     XP_053912480.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056505.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1049
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1049
                     /product="protein phosphatase 1 regulatory subunit 12A
                     isoform X5"
                     /calculated_mol_wt=116393
     Region          <44..298
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(49..51,53..54,58,61,70,72,74,78..79,82..84,86..87,
                     91,94,103,105,107,111..112,115..117,119..120,124,127,136)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          72..103
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          105..136
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          138..229
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          231..262
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          702..758
                     /region_name="IPD_MYPT1"
                     /note="inhibitory phosphorylation domain of myosin
                     phosphatase targeting subunit 1(MYPT1); cd21944"
                     /db_xref="CDD:412019"
     Region          975..>1029
                     /region_name="PRKG1_interact"
                     /note="cGMP-dependent protein kinase interacting domain;
                     pfam15898"
                     /db_xref="CDD:464927"
     CDS             1..1049
                     /gene="PPP1R12A"
                     /coded_by="XM_054056505.1:139..3288"
                     /db_xref="GeneID:104061152"
ORIGIN      
        1 mkmadakqkr neqlkrwigs etdleppvvk rkktkvkfdd gavflaacss gdteevlrll
       61 ergadinyan vdgltalhqa ciddnvdmvk flvenganin qpdnegwipl haaascgyld
      121 iaeylisqga hvgavnsegd tpldiaeeea meellqnevn rqgvdieaar keeerimlrd
      181 arqwlnsghi ndvrhaksgg talhvaaakg ytevlklliq arydvnikdy dgwtplhaaa
      241 hwgkeeacri lvenlcdmea vnkvgqtafd vadedilgyl eelqkkqnll hsekrekksp
      301 liestanmdn nqtqktfknk etlimeqekn assieslehe kadeeeegkk desscsseee
      361 edddseseae tdktktlaav tnnanttstq sasvavtaps vaggqgapts pvkkydsipp
      421 impvmesvdp aswrqglrkt gialvpnkge ksmfptsttk vspkeeerkd espaswrlcl
      481 rktgsygala eitaskeaqk ekdsagvmrs assprlsssl dnkekekdgk gtrlayvapt
      541 iprrlastsd idekenrdss assirggssy trrkweedvk knslnegpas lntsyqrsgs
      601 fgrrqddlis ssvpstastv tssaglqktl ptstntttks ttgstsagvq sstsnrlwae
      661 dstekekdsv ptavtvpvap svvnatattt amttatsgtv sstsevrerr rsyltpvrde
      721 esesqrkars rqarqsrrst qgvtltdlqe aektigrsrp trtreqesee kekeekekqd
      781 kekqeekkes etkeddyrqr ysrtaeepyh ryrptststt ssstsslsts tsslstssql
      841 nrpnsligit saysrsgtke sereggkkee ekeedksqpk sirerrrpre krrstgvsfw
      901 tqdsdeneqe hqsdseegtn kketqsdsls rydtgslsvs sgdrydsaqg rsgsqsyled
      961 rkpycsrlek edstdfkkly eqilaenekl kaqlhdtnme ltdlklqlek ttqrqerfad
     1021 rsllemekrv tgksqyllgg kkssrkkdi
//
LOCUS       XP_053912489            1049 aa            linear   VRT 09-MAR-2023
DEFINITION  protein phosphatase 1 regulatory subunit 12A isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053912489
VERSION     XP_053912489.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056514.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1049
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1049
                     /product="protein phosphatase 1 regulatory subunit 12A
                     isoform X5"
                     /calculated_mol_wt=116393
     Region          <44..298
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(49..51,53..54,58,61,70,72,74,78..79,82..84,86..87,
                     91,94,103,105,107,111..112,115..117,119..120,124,127,136)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          72..103
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          105..136
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          138..229
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          231..262
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          702..758
                     /region_name="IPD_MYPT1"
                     /note="inhibitory phosphorylation domain of myosin
                     phosphatase targeting subunit 1(MYPT1); cd21944"
                     /db_xref="CDD:412019"
     Region          975..>1029
                     /region_name="PRKG1_interact"
                     /note="cGMP-dependent protein kinase interacting domain;
                     pfam15898"
                     /db_xref="CDD:464927"
     CDS             1..1049
                     /gene="PPP1R12A"
                     /coded_by="XM_054056514.1:140..3289"
                     /db_xref="GeneID:104061152"
ORIGIN      
        1 mkmadakqkr neqlkrwigs etdleppvvk rkktkvkfdd gavflaacss gdteevlrll
       61 ergadinyan vdgltalhqa ciddnvdmvk flvenganin qpdnegwipl haaascgyld
      121 iaeylisqga hvgavnsegd tpldiaeeea meellqnevn rqgvdieaar keeerimlrd
      181 arqwlnsghi ndvrhaksgg talhvaaakg ytevlklliq arydvnikdy dgwtplhaaa
      241 hwgkeeacri lvenlcdmea vnkvgqtafd vadedilgyl eelqkkqnll hsekrekksp
      301 liestanmdn nqtqktfknk etlimeqekn assieslehe kadeeeegkk desscsseee
      361 edddseseae tdktktlaav tnnanttstq sasvavtaps vaggqgapts pvkkydsipp
      421 impvmesvdp aswrqglrkt gialvpnkge ksmfptsttk vspkeeerkd espaswrlcl
      481 rktgsygala eitaskeaqk ekdsagvmrs assprlsssl dnkekekdgk gtrlayvapt
      541 iprrlastsd idekenrdss assirggssy trrkweedvk knslnegpas lntsyqrsgs
      601 fgrrqddlis ssvpstastv tssaglqktl ptstntttks ttgstsagvq sstsnrlwae
      661 dstekekdsv ptavtvpvap svvnatattt amttatsgtv sstsevrerr rsyltpvrde
      721 esesqrkars rqarqsrrst qgvtltdlqe aektigrsrp trtreqesee kekeekekqd
      781 kekqeekkes etkeddyrqr ysrtaeepyh ryrptststt ssstsslsts tsslstssql
      841 nrpnsligit saysrsgtke sereggkkee ekeedksqpk sirerrrpre krrstgvsfw
      901 tqdsdeneqe hqsdseegtn kketqsdsls rydtgslsvs sgdrydsaqg rsgsqsyled
      961 rkpycsrlek edstdfkkly eqilaenekl kaqlhdtnme ltdlklqlek ttqrqerfad
     1021 rsllemekrv tgksqyllgg kkssrkkdi
//
LOCUS       XP_053912495            1043 aa            linear   VRT 09-MAR-2023
DEFINITION  protein phosphatase 1 regulatory subunit 12A isoform X6 [Cuculus
            canorus].
ACCESSION   XP_053912495
VERSION     XP_053912495.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056520.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1043
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1043
                     /product="protein phosphatase 1 regulatory subunit 12A
                     isoform X6"
                     /calculated_mol_wt=115831
     Region          <44..298
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(49..51,53..54,58,61,70,72,74,78..79,82..84,86..87,
                     91,94,103,105,107,111..112,115..117,119..120,124,127,136)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          72..103
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          105..136
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          138..229
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          231..262
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          702..758
                     /region_name="IPD_MYPT1"
                     /note="inhibitory phosphorylation domain of myosin
                     phosphatase targeting subunit 1(MYPT1); cd21944"
                     /db_xref="CDD:412019"
     Region          975..>1029
                     /region_name="PRKG1_interact"
                     /note="cGMP-dependent protein kinase interacting domain;
                     pfam15898"
                     /db_xref="CDD:464927"
     CDS             1..1043
                     /gene="PPP1R12A"
                     /coded_by="XM_054056520.1:139..3270"
                     /db_xref="GeneID:104061152"
ORIGIN      
        1 mkmadakqkr neqlkrwigs etdleppvvk rkktkvkfdd gavflaacss gdteevlrll
       61 ergadinyan vdgltalhqa ciddnvdmvk flvenganin qpdnegwipl haaascgyld
      121 iaeylisqga hvgavnsegd tpldiaeeea meellqnevn rqgvdieaar keeerimlrd
      181 arqwlnsghi ndvrhaksgg talhvaaakg ytevlklliq arydvnikdy dgwtplhaaa
      241 hwgkeeacri lvenlcdmea vnkvgqtafd vadedilgyl eelqkkqnll hsekrekksp
      301 liestanmdn nqtqktfknk etlimeqekn assieslehe kadeeeegkk desscsseee
      361 edddseseae tdktktlaav tnnanttstq sasvavtaps vaggqgapts pvkkydsipp
      421 impvmesvdp aswrqglrkt gialvpnkge ksmfptsttk vspkeeerkd espaswrlcl
      481 rktgsygala eitaskeaqk ekdsagvmrs assprlsssl dnkekekdgk gtrlayvapt
      541 iprrlastsd idekenrdss assirggssy trrkweedvk knslnegpas lntsyqrsgs
      601 fgrrqddlis ssvpstastv tssaglqktl ptstntttks ttgstsagvq sstsnrlwae
      661 dstekekdsv ptavtvpvap svvnatattt amttatsgtv sstsevrerr rsyltpvrde
      721 esesqrkars rqarqsrrst qgvtltdlqe aektigrsrp trtreqesee kekeekekqd
      781 kekqeekkes etkeddyrqr ysrtaeepyh ryrptststt ssstsslsts tsslstssql
      841 nrpnsligit saysrsgtke sereggkkee ekeedksqpk sirerrrpre krrstgvsfw
      901 tqdsdeneqe hqsdseegtn kketqsdsls rydtgslsvs sgdrydsaqg rsgsqsyled
      961 rkpycsrlek edstdfkkly eqilaenekl kaqlhdtnme ltdlklqlek ttqrqerfad
     1021 rsllemekrv tgkrkkssrk kdi
//
LOCUS       XP_053912502            1035 aa            linear   VRT 09-MAR-2023
DEFINITION  protein phosphatase 1 regulatory subunit 12A isoform X7 [Cuculus
            canorus].
ACCESSION   XP_053912502
VERSION     XP_053912502.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056527.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1035
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1035
                     /product="protein phosphatase 1 regulatory subunit 12A
                     isoform X7"
                     /calculated_mol_wt=115241
     Region          <44..298
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(49..51,53..54,58,61,70,72,74,78..79,82..84,86..87,
                     91,94,103,105,107,111..112,115..117,119..120,124,127,136)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          72..103
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          105..136
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          138..229
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          231..262
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          663..719
                     /region_name="IPD_MYPT1"
                     /note="inhibitory phosphorylation domain of myosin
                     phosphatase targeting subunit 1(MYPT1); cd21944"
                     /db_xref="CDD:412019"
     Region          936..1035
                     /region_name="PRKG1_interact"
                     /note="cGMP-dependent protein kinase interacting domain;
                     pfam15898"
                     /db_xref="CDD:464927"
     CDS             1..1035
                     /gene="PPP1R12A"
                     /coded_by="XM_054056527.1:137..3244"
                     /db_xref="GeneID:104061152"
ORIGIN      
        1 mkmadakqkr neqlkrwigs etdleppvvk rkktkvkfdd gavflaacss gdteevlrll
       61 ergadinyan vdgltalhqa ciddnvdmvk flvenganin qpdnegwipl haaascgyld
      121 iaeylisqga hvgavnsegd tpldiaeeea meellqnevn rqgvdieaar keeerimlrd
      181 arqwlnsghi ndvrhaksgg talhvaaakg ytevlklliq arydvnikdy dgwtplhaaa
      241 hwgkeeacri lvenlcdmea vnkvgqtafd vadedilgyl eelqkkqnll hsekrekksp
      301 liestanmdn nqtqktfknk etlimeqekn assieslehe kadeeeegkk desscsseee
      361 edddseseae tdktktlaav tnnanttstq sasvavtaps vaggqgapts pvkkfptstt
      421 kvspkeeerk despaswrlc lrktgsygal aeitaskeaq kekdsagvmr sassprlsss
      481 ldnkekekdg kgtrlayvap tiprrlasts didekenrds sassirggss ytrrkweedv
      541 kknslnegpa slntsyqrsg sfgrrqddli sssvpstast vtssaglqkt lptstntttk
      601 sttgstsagv qsstsnrlwa edstekekds vptavtvpva psvvnatatt tamttatsgt
      661 vsstsevrer rrsyltpvrd eesesqrkar srqarqsrrs tqgvtltdlq eaektigrsr
      721 ptrtreqese ekekeekekq dkekqeekke setkeddyrq rysrtaeepy hryrptstst
      781 tssstsslst stsslstssq lnrpnsligi tsaysrsgtk esereggkke eekeedksqp
      841 ksirerrrpr ekrrstgvsf wtqdsdeneq ehqsdseegt nkketqsdsl srydtgslsv
      901 ssgdrydsaq grsgsqsyle drkpycsrle kedstdfkkl yeqilaenek lkaqlhdtnm
      961 eltdlklqle kttqrqerfa drsllemekr erralerris emeeelkmlp dlkadnqrlk
     1021 dengalirvi sklsk
//
LOCUS       XP_053912508            1031 aa            linear   VRT 09-MAR-2023
DEFINITION  protein phosphatase 1 regulatory subunit 12A isoform X8 [Cuculus
            canorus].
ACCESSION   XP_053912508
VERSION     XP_053912508.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056533.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1031
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1031
                     /product="protein phosphatase 1 regulatory subunit 12A
                     isoform X8"
                     /calculated_mol_wt=115349
     Region          <44..298
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(49..51,53..54,58,61,70,72,74,78..79,82..84,86..87,
                     91,94,103,105,107,111..112,115..117,119..120,124,127,136)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          72..103
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          105..136
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          138..229
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          231..262
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          652..698
                     /region_name="IPD_PPP1R12"
                     /note="inhibitory phosphorylation domain of protein
                     phosphatase 1 regulatory subunit 12 (PPP1R12) family;
                     cl40436"
                     /db_xref="CDD:424067"
     Region          916..1020
                     /region_name="PRKG1_interact"
                     /note="cGMP-dependent protein kinase interacting domain;
                     pfam15898"
                     /db_xref="CDD:464927"
     CDS             1..1031
                     /gene="PPP1R12A"
                     /coded_by="XM_054056533.1:141..3236"
                     /db_xref="GeneID:104061152"
ORIGIN      
        1 mkmadakqkr neqlkrwigs etdleppvvk rkktkvkfdd gavflaacss gdteevlrll
       61 ergadinyan vdgltalhqa ciddnvdmvk flvenganin qpdnegwipl haaascgyld
      121 iaeylisqga hvgavnsegd tpldiaeeea meellqnevn rqgvdieaar keeerimlrd
      181 arqwlnsghi ndvrhaksgg talhvaaakg ytevlklliq arydvnikdy dgwtplhaaa
      241 hwgkeeacri lvenlcdmea vnkvgqtafd vadedilgyl eelqkkqnll hsekrekksp
      301 liestanmdn nqtqktfknk etlimeqekn assieslehe kadeeeegkk desscsseee
      361 edddseseae tdktktlaav tnnanttstq sasvavtaps vaggqgapts pvkkydsipp
      421 impvmesvdp aswrqglrkt gialvpnkge ksmfptsttk vspkeeerkd espaswrlcl
      481 rktgsygala eitaskeaqk ekdsagvmrs assprlsssl dnkekekdgk gtrlayvapt
      541 iprrlastsd idekenrdss assirggssy trrkweedvk knslnegpas lntsyqrsgs
      601 fgrrqddlis ssvpstastv tssaglqktl ptstntttks ttgstsagvq srsyltpvrd
      661 eesesqrkar srqarqsrrs tqgvtltdlq eaektigrsr ptrtreqese ekekeekekq
      721 dkekqeekke setkeddyrq rysrtaeepy hryrptstst tssstsslst stsslstssq
      781 lnrpnsligi tsaysrsgtk esereggkke eekeedksqp ksirerrrpr ekrrstgvsf
      841 wtqdsdeneq ehqsdseegt nkketqsdsl srydtgslsv ssgdrydsaq grsgsqsyle
      901 drkpycsrle kedstdfkkl yeqilaenek lkaqlhdtnm eltdlklqle kttqrqerfa
      961 drsllemekr erralerris emeeelknlq qikqiqslrh inerlvtenr altrvvakls
     1021 gsyrqlrsvd l
//
LOCUS       XP_053912517            1010 aa            linear   VRT 09-MAR-2023
DEFINITION  protein phosphatase 1 regulatory subunit 12A isoform X9 [Cuculus
            canorus].
ACCESSION   XP_053912517
VERSION     XP_053912517.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056542.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1010
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1010
                     /product="protein phosphatase 1 regulatory subunit 12A
                     isoform X9"
                     /calculated_mol_wt=112111
     Region          <44..298
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(49..51,53..54,58,61,70,72,74,78..79,82..84,86..87,
                     91,94,103,105,107,111..112,115..117,119..120,124,127,136)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          72..103
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          105..136
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          138..229
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          231..262
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          663..719
                     /region_name="IPD_MYPT1"
                     /note="inhibitory phosphorylation domain of myosin
                     phosphatase targeting subunit 1(MYPT1); cd21944"
                     /db_xref="CDD:412019"
     Region          936..>990
                     /region_name="PRKG1_interact"
                     /note="cGMP-dependent protein kinase interacting domain;
                     pfam15898"
                     /db_xref="CDD:464927"
     CDS             1..1010
                     /gene="PPP1R12A"
                     /coded_by="XM_054056542.1:138..3170"
                     /db_xref="GeneID:104061152"
ORIGIN      
        1 mkmadakqkr neqlkrwigs etdleppvvk rkktkvkfdd gavflaacss gdteevlrll
       61 ergadinyan vdgltalhqa ciddnvdmvk flvenganin qpdnegwipl haaascgyld
      121 iaeylisqga hvgavnsegd tpldiaeeea meellqnevn rqgvdieaar keeerimlrd
      181 arqwlnsghi ndvrhaksgg talhvaaakg ytevlklliq arydvnikdy dgwtplhaaa
      241 hwgkeeacri lvenlcdmea vnkvgqtafd vadedilgyl eelqkkqnll hsekrekksp
      301 liestanmdn nqtqktfknk etlimeqekn assieslehe kadeeeegkk desscsseee
      361 edddseseae tdktktlaav tnnanttstq sasvavtaps vaggqgapts pvkkfptstt
      421 kvspkeeerk despaswrlc lrktgsygal aeitaskeaq kekdsagvmr sassprlsss
      481 ldnkekekdg kgtrlayvap tiprrlasts didekenrds sassirggss ytrrkweedv
      541 kknslnegpa slntsyqrsg sfgrrqddli sssvpstast vtssaglqkt lptstntttk
      601 sttgstsagv qsstsnrlwa edstekekds vptavtvpva psvvnatatt tamttatsgt
      661 vsstsevrer rrsyltpvrd eesesqrkar srqarqsrrs tqgvtltdlq eaektigrsr
      721 ptrtreqese ekekeekekq dkekqeekke setkeddyrq rysrtaeepy hryrptstst
      781 tssstsslst stsslstssq lnrpnsligi tsaysrsgtk esereggkke eekeedksqp
      841 ksirerrrpr ekrrstgvsf wtqdsdeneq ehqsdseegt nkketqsdsl srydtgslsv
      901 ssgdrydsaq grsgsqsyle drkpycsrle kedstdfkkl yeqilaenek lkaqlhdtnm
      961 eltdlklqle kttqrqerfa drsllemekr vtgksqyllg gkkssrkkdi
//
LOCUS       XP_053912521             979 aa            linear   VRT 09-MAR-2023
DEFINITION  protein phosphatase 1 regulatory subunit 12A isoform X10 [Cuculus
            canorus].
ACCESSION   XP_053912521
VERSION     XP_053912521.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056546.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..979
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..979
                     /product="protein phosphatase 1 regulatory subunit 12A
                     isoform X10"
                     /calculated_mol_wt=109362
     Region          <44..298
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(49..51,53..54,58,61,70,72,74,78..79,82..84,86..87,
                     91,94,103,105,107,111..112,115..117,119..120,124,127,136)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          72..103
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          105..136
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          138..229
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          231..262
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          591..647
                     /region_name="IPD_MYPT1"
                     /note="inhibitory phosphorylation domain of myosin
                     phosphatase targeting subunit 1(MYPT1); cd21944"
                     /db_xref="CDD:412019"
     Region          864..968
                     /region_name="PRKG1_interact"
                     /note="cGMP-dependent protein kinase interacting domain;
                     pfam15898"
                     /db_xref="CDD:464927"
     CDS             1..979
                     /gene="PPP1R12A"
                     /coded_by="XM_054056546.1:140..3079"
                     /db_xref="GeneID:104061152"
ORIGIN      
        1 mkmadakqkr neqlkrwigs etdleppvvk rkktkvkfdd gavflaacss gdteevlrll
       61 ergadinyan vdgltalhqa ciddnvdmvk flvenganin qpdnegwipl haaascgyld
      121 iaeylisqga hvgavnsegd tpldiaeeea meellqnevn rqgvdieaar keeerimlrd
      181 arqwlnsghi ndvrhaksgg talhvaaakg ytevlklliq arydvnikdy dgwtplhaaa
      241 hwgkeeacri lvenlcdmea vnkvgqtafd vadedilgyl eelqkkqnll hsekrekksp
      301 liestanmdn nqtqktfknk etlimeqekn assieslehe kadeeeegkk desscsseee
      361 edddseseae tdktktlaav tnnanttstq sasvavtaps vaggqgapts pvkkekdgkg
      421 trlayvapti prrlastsdi dekenrdssa ssirggssyt rrkweedvkk nslnegpasl
      481 ntsyqrsgsf grrqddliss svpstastvt ssaglqktlp tstntttkst tgstsagvqs
      541 stsnrlwaed stekekdsvp tavtvpvaps vvnatattta mttatsgtvs stsevrerrr
      601 syltpvrdee sesqrkarsr qarqsrrstq gvtltdlqea ektigrsrpt rtreqeseek
      661 ekeekekqdk ekqeekkese tkeddyrqry srtaeepyhr yrptststts sstsslstst
      721 sslstssqln rpnsligits aysrsgtkes ereggkkeee keedksqpks irerrrprek
      781 rrstgvsfwt qdsdeneqeh qsdseegtnk ketqsdslsr ydtgslsvss gdrydsaqgr
      841 sgsqsyledr kpycsrleke dstdfkklye qilaeneklk aqlhdtnmel tdlklqlekt
      901 tqrqerfadr sllemekrer ralerrisem eeelknlqqi kqiqslrhin erlvtenral
      961 trvvaklsgs yrqlrsvdl
//
LOCUS       XP_009555905             619 aa            linear   VRT 09-MAR-2023
DEFINITION  cryptochrome-1 isoform X1 [Cuculus canorus].
ACCESSION   XP_009555905
VERSION     XP_009555905.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557610.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555905.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..619
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..619
                     /product="cryptochrome-1 isoform X1"
                     /calculated_mol_wt=69299
     Region          5..487
                     /region_name="PhrB"
                     /note="Deoxyribodipyrimidine photolyase [Replication,
                     recombination and repair]; COG0415"
                     /db_xref="CDD:440184"
     CDS             1..619
                     /gene="CRY1"
                     /coded_by="XM_009557610.2:306..2165"
                     /db_xref="GeneID:104056359"
ORIGIN      
        1 mgvnavhwfr kglrlhdnpa lreciqgadt vrcvyildpw fagssnvgin rwrfllqcle
       61 dldanlrkln srlfvirgqp advfprlfke wniaklsiey dsepfgkerd aaikklasea
      121 gvevivrish tlydldkiie lnggqpplty krfqtlisrm eplempveti tpevmekcat
      181 pvsddhdeky gvpsleelgf dtdglpsavw pggetealtr lerhlerkaw vanferprmn
      241 ansllasptg lspylrfgcl scrlfyfklt dlykkvkkns spplslygql lwreffytaa
      301 tnnprfdkme gnpicvqipw dknpealakw aegrtgfpwi daimtqlrqe gwihhlarha
      361 vacfltrgdl wisweegmkv feellldadw svnagswmwl scssffqqff hcycpvgfgr
      421 rtdpngdyir rylpvlrgfp akyiydpwna pesiqkaakc iigvnypkpm vnhaeasrln
      481 iermkqiyqq lsryrglgll atvpsnpngn gngglmgysp gesvsgcgst ggaqmgtgdg
      541 htvvqpcalg dshtggsgiq qqgycqassi lhyahgdnqq shvlqagrta lgtgisagkr
      601 pnpeetqsvg pkvqrqstn
//
LOCUS       XP_053912542             595 aa            linear   VRT 09-MAR-2023
DEFINITION  cryptochrome-1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912542
VERSION     XP_053912542.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056567.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..595
                     /product="cryptochrome-1 isoform X2"
                     /calculated_mol_wt=66689
     Region          5..487
                     /region_name="PhrB"
                     /note="Deoxyribodipyrimidine photolyase [Replication,
                     recombination and repair]; COG0415"
                     /db_xref="CDD:440184"
     CDS             1..595
                     /gene="CRY1"
                     /coded_by="XM_054056567.1:307..2094"
                     /db_xref="GeneID:104056359"
ORIGIN      
        1 mgvnavhwfr kglrlhdnpa lreciqgadt vrcvyildpw fagssnvgin rwrfllqcle
       61 dldanlrkln srlfvirgqp advfprlfke wniaklsiey dsepfgkerd aaikklasea
      121 gvevivrish tlydldkiie lnggqpplty krfqtlisrm eplempveti tpevmekcat
      181 pvsddhdeky gvpsleelgf dtdglpsavw pggetealtr lerhlerkaw vanferprmn
      241 ansllasptg lspylrfgcl scrlfyfklt dlykkvkkns spplslygql lwreffytaa
      301 tnnprfdkme gnpicvqipw dknpealakw aegrtgfpwi daimtqlrqe gwihhlarha
      361 vacfltrgdl wisweegmkv feellldadw svnagswmwl scssffqqff hcycpvgfgr
      421 rtdpngdyir rylpvlrgfp akyiydpwna pesiqkaakc iigvnypkpm vnhaeasrln
      481 iermkqiyqq lsryrglgll atvpsnpngn gngglmgysp gesvsgcgst ggaqmgtgdg
      541 htvvqpcalg dshtggsgiq qqgrtalgtg isagkrpnpe etqsvgpkvq rqstn
//
LOCUS       XP_053912553             398 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription termination factor 2, mitochondrial [Cuculus
            canorus].
ACCESSION   XP_053912553
VERSION     XP_053912553.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056578.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..398
                     /product="transcription termination factor 2,
                     mitochondrial"
                     /calculated_mol_wt=45397
     Region          71..373
                     /region_name="mTERF"
                     /note="pfam02536"
                     /db_xref="CDD:460581"
     CDS             1..398
                     /gene="MTERF2"
                     /coded_by="XM_054056578.1:385..1581"
                     /db_xref="GeneID:104056337"
ORIGIN      
        1 mmfrgathvv kdaftllltr sqycnpglnf ssawtevanr sfpmhstytt dtksreenkk
       61 tieslyslsv dikkirrlke wvllqevayv keiagilqem gadetavanv lercpeailh
      121 tpaevnsqra lwqlvcqnek qliklieqfp esfftiehhe nqkanilffq elglknniit
      181 rfltsapnif ynpveknktm ietlqrnyls lggsdanmki wilkllsqnp fillnsstai
      241 qenleflqkn gftdqevlhl lsklkgfifq ltpatmqksm lfsknvfkcn dqdlkqlvlt
      301 cpallyysvp vleerlegll kegisvaqir etpmvleltt qiiqyrikkl salgydiksg
      361 tleslngtkk dfevsygkiq skkerpifnp vapisied
//
LOCUS       XP_053912559             398 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription termination factor 2, mitochondrial [Cuculus
            canorus].
ACCESSION   XP_053912559
VERSION     XP_053912559.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056584.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..398
                     /product="transcription termination factor 2,
                     mitochondrial"
                     /calculated_mol_wt=45397
     Region          71..373
                     /region_name="mTERF"
                     /note="pfam02536"
                     /db_xref="CDD:460581"
     CDS             1..398
                     /gene="MTERF2"
                     /coded_by="XM_054056584.1:109..1305"
                     /db_xref="GeneID:104056337"
ORIGIN      
        1 mmfrgathvv kdaftllltr sqycnpglnf ssawtevanr sfpmhstytt dtksreenkk
       61 tieslyslsv dikkirrlke wvllqevayv keiagilqem gadetavanv lercpeailh
      121 tpaevnsqra lwqlvcqnek qliklieqfp esfftiehhe nqkanilffq elglknniit
      181 rfltsapnif ynpveknktm ietlqrnyls lggsdanmki wilkllsqnp fillnsstai
      241 qenleflqkn gftdqevlhl lsklkgfifq ltpatmqksm lfsknvfkcn dqdlkqlvlt
      301 cpallyysvp vleerlegll kegisvaqir etpmvleltt qiiqyrikkl salgydiksg
      361 tleslngtkk dfevsygkiq skkerpifnp vapisied
//
LOCUS       XP_053912564             398 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription termination factor 2, mitochondrial [Cuculus
            canorus].
ACCESSION   XP_053912564
VERSION     XP_053912564.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056589.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..398
                     /product="transcription termination factor 2,
                     mitochondrial"
                     /calculated_mol_wt=45397
     Region          71..373
                     /region_name="mTERF"
                     /note="pfam02536"
                     /db_xref="CDD:460581"
     CDS             1..398
                     /gene="MTERF2"
                     /coded_by="XM_054056589.1:32..1228"
                     /db_xref="GeneID:104056337"
ORIGIN      
        1 mmfrgathvv kdaftllltr sqycnpglnf ssawtevanr sfpmhstytt dtksreenkk
       61 tieslyslsv dikkirrlke wvllqevayv keiagilqem gadetavanv lercpeailh
      121 tpaevnsqra lwqlvcqnek qliklieqfp esfftiehhe nqkanilffq elglknniit
      181 rfltsapnif ynpveknktm ietlqrnyls lggsdanmki wilkllsqnp fillnsstai
      241 qenleflqkn gftdqevlhl lsklkgfifq ltpatmqksm lfsknvfkcn dqdlkqlvlt
      301 cpallyysvp vleerlegll kegisvaqir etpmvleltt qiiqyrikkl salgydiksg
      361 tleslngtkk dfevsygkiq skkerpifnp vapisied
//
LOCUS       XP_053912575             119 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 263 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912575
VERSION     XP_053912575.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056600.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..119
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..119
                     /product="transmembrane protein 263 isoform X1"
                     /calculated_mol_wt=11903
     Region          28..118
                     /region_name="UPF0444"
                     /note="Transmembrane protein C12orf23, UPF0444; pfam15475"
                     /db_xref="CDD:464737"
     CDS             1..119
                     /gene="TMEM263"
                     /coded_by="XM_054056600.1:277..636"
                     /db_xref="GeneID:104056336"
ORIGIN      
        1 mammnqtdkn qqevpsylhd eppegslkdh pqqqpgmlsr vtgglfsvtk gavgatiggv
       61 awiggkslei tktavtsvps mgvglvkgsv savaggvtav gsavaskvpl tgkkkdksd
//
LOCUS       XP_053912582             117 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 263 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912582
VERSION     XP_053912582.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056607.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..117
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..117
                     /product="transmembrane protein 263 isoform X2"
                     /calculated_mol_wt=11700
     Region          26..116
                     /region_name="UPF0444"
                     /note="Transmembrane protein C12orf23, UPF0444; pfam15475"
                     /db_xref="CDD:464737"
     CDS             1..117
                     /gene="TMEM263"
                     /coded_by="XM_054056607.1:128..481"
                     /db_xref="GeneID:104056336"
ORIGIN      
        1 mmnqtdknqq evpsylhdep pegslkdhpq qqpgmlsrvt gglfsvtkga vgatiggvaw
       61 iggksleitk tavtsvpsmg vglvkgsvsa vaggvtavgs avaskvpltg kkkdksd
//
LOCUS       XP_053912590             119 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 263 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912590
VERSION     XP_053912590.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056615.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..119
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..119
                     /product="transmembrane protein 263 isoform X1"
                     /calculated_mol_wt=11903
     Region          28..118
                     /region_name="UPF0444"
                     /note="Transmembrane protein C12orf23, UPF0444; pfam15475"
                     /db_xref="CDD:464737"
     CDS             1..119
                     /gene="TMEM263"
                     /coded_by="XM_054056615.1:338..697"
                     /db_xref="GeneID:104056336"
ORIGIN      
        1 mammnqtdkn qqevpsylhd eppegslkdh pqqqpgmlsr vtgglfsvtk gavgatiggv
       61 awiggkslei tktavtsvps mgvglvkgsv savaggvtav gsavaskvpl tgkkkdksd
//
LOCUS       XP_053912598             117 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 263 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912598
VERSION     XP_053912598.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056623.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..117
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..117
                     /product="transmembrane protein 263 isoform X2"
                     /calculated_mol_wt=11700
     Region          26..116
                     /region_name="UPF0444"
                     /note="Transmembrane protein C12orf23, UPF0444; pfam15475"
                     /db_xref="CDD:464737"
     CDS             1..117
                     /gene="TMEM263"
                     /coded_by="XM_054056623.1:124..477"
                     /db_xref="GeneID:104056336"
ORIGIN      
        1 mmnqtdknqq evpsylhdep pegslkdhpq qqpgmlsrvt gglfsvtkga vgatiggvaw
       61 iggksleitk tavtsvpsmg vglvkgsvsa vaggvtavgs avaskvpltg kkkdksd
//
LOCUS       XP_053912606             119 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 263 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912606
VERSION     XP_053912606.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056631.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..119
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..119
                     /product="transmembrane protein 263 isoform X1"
                     /calculated_mol_wt=11903
     Region          28..118
                     /region_name="UPF0444"
                     /note="Transmembrane protein C12orf23, UPF0444; pfam15475"
                     /db_xref="CDD:464737"
     CDS             1..119
                     /gene="TMEM263"
                     /coded_by="XM_054056631.1:271..630"
                     /db_xref="GeneID:104056336"
ORIGIN      
        1 mammnqtdkn qqevpsylhd eppegslkdh pqqqpgmlsr vtgglfsvtk gavgatiggv
       61 awiggkslei tktavtsvps mgvglvkgsv savaggvtav gsavaskvpl tgkkkdksd
//
LOCUS       XP_053912614             480 aa            linear   VRT 09-MAR-2023
DEFINITION  monocarboxylate transporter 2 [Cuculus canorus].
ACCESSION   XP_053912614
VERSION     XP_053912614.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056639.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..480
                     /product="monocarboxylate transporter 2"
                     /calculated_mol_wt=52495
     Region          1..452
                     /region_name="2A0113"
                     /note="monocarboxylate transporter 1; TIGR00892"
                     /db_xref="CDD:273325"
     CDS             1..480
                     /gene="SLC16A7"
                     /coded_by="XM_054056639.1:296..1738"
                     /db_xref="GeneID:104062608"
ORIGIN      
        1 mppatgtpqy pppdggwgwv vvfgafisig fsyafpkait vffkeiqeif htsyseiawi
       61 ssimlavmya ggpissilvn kygsrpvmia ggilcsfgmi assfcnsvle lyicigvvgg
      121 lglafnlqpa ltmigkyfyk krpianglam agspvflstl aplnqflfna fgwkgsflil
      181 gglllnccva gslmrpvgpr tvppvkkdve kgtgdsalhk nnkksfwqti nkyldlslfk
      241 hrgfliylsg nvimfigffa pivflapyak hkgideysaa fllsilafvd mfarpsmglv
      301 anskfirpki qyffsfavfy ngvchilcpl atnytglviy avffgfafgm vssvlfetlm
      361 dlvgaarfss avglvtivec cpvligpplg gwlvdvtgey qymyfvcgvi vvvssiwlfi
      421 gnainyrlla kekkledekq kaqkntdlke aepltnnene daanrddkal edpseretni
//
LOCUS       XP_053912622             480 aa            linear   VRT 09-MAR-2023
DEFINITION  monocarboxylate transporter 2 [Cuculus canorus].
ACCESSION   XP_053912622
VERSION     XP_053912622.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056647.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..480
                     /product="monocarboxylate transporter 2"
                     /calculated_mol_wt=52495
     Region          1..452
                     /region_name="2A0113"
                     /note="monocarboxylate transporter 1; TIGR00892"
                     /db_xref="CDD:273325"
     CDS             1..480
                     /gene="SLC16A7"
                     /coded_by="XM_054056647.1:171..1613"
                     /db_xref="GeneID:104062608"
ORIGIN      
        1 mppatgtpqy pppdggwgwv vvfgafisig fsyafpkait vffkeiqeif htsyseiawi
       61 ssimlavmya ggpissilvn kygsrpvmia ggilcsfgmi assfcnsvle lyicigvvgg
      121 lglafnlqpa ltmigkyfyk krpianglam agspvflstl aplnqflfna fgwkgsflil
      181 gglllnccva gslmrpvgpr tvppvkkdve kgtgdsalhk nnkksfwqti nkyldlslfk
      241 hrgfliylsg nvimfigffa pivflapyak hkgideysaa fllsilafvd mfarpsmglv
      301 anskfirpki qyffsfavfy ngvchilcpl atnytglviy avffgfafgm vssvlfetlm
      361 dlvgaarfss avglvtivec cpvligpplg gwlvdvtgey qymyfvcgvi vvvssiwlfi
      421 gnainyrlla kekkledekq kaqkntdlke aepltnnene daanrddkal edpseretni
//
LOCUS       XP_053912631             480 aa            linear   VRT 09-MAR-2023
DEFINITION  monocarboxylate transporter 2 [Cuculus canorus].
ACCESSION   XP_053912631
VERSION     XP_053912631.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056656.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..480
                     /product="monocarboxylate transporter 2"
                     /calculated_mol_wt=52495
     Region          1..452
                     /region_name="2A0113"
                     /note="monocarboxylate transporter 1; TIGR00892"
                     /db_xref="CDD:273325"
     CDS             1..480
                     /gene="SLC16A7"
                     /coded_by="XM_054056656.1:4368..5810"
                     /db_xref="GeneID:104062608"
ORIGIN      
        1 mppatgtpqy pppdggwgwv vvfgafisig fsyafpkait vffkeiqeif htsyseiawi
       61 ssimlavmya ggpissilvn kygsrpvmia ggilcsfgmi assfcnsvle lyicigvvgg
      121 lglafnlqpa ltmigkyfyk krpianglam agspvflstl aplnqflfna fgwkgsflil
      181 gglllnccva gslmrpvgpr tvppvkkdve kgtgdsalhk nnkksfwqti nkyldlslfk
      241 hrgfliylsg nvimfigffa pivflapyak hkgideysaa fllsilafvd mfarpsmglv
      301 anskfirpki qyffsfavfy ngvchilcpl atnytglviy avffgfafgm vssvlfetlm
      361 dlvgaarfss avglvtivec cpvligpplg gwlvdvtgey qymyfvcgvi vvvssiwlfi
      421 gnainyrlla kekkledekq kaqkntdlke aepltnnene daanrddkal edpseretni
//
LOCUS       XP_053912639             480 aa            linear   VRT 09-MAR-2023
DEFINITION  monocarboxylate transporter 2 [Cuculus canorus].
ACCESSION   XP_053912639
VERSION     XP_053912639.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056664.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..480
                     /product="monocarboxylate transporter 2"
                     /calculated_mol_wt=52495
     Region          1..452
                     /region_name="2A0113"
                     /note="monocarboxylate transporter 1; TIGR00892"
                     /db_xref="CDD:273325"
     CDS             1..480
                     /gene="SLC16A7"
                     /coded_by="XM_054056664.1:62..1504"
                     /db_xref="GeneID:104062608"
ORIGIN      
        1 mppatgtpqy pppdggwgwv vvfgafisig fsyafpkait vffkeiqeif htsyseiawi
       61 ssimlavmya ggpissilvn kygsrpvmia ggilcsfgmi assfcnsvle lyicigvvgg
      121 lglafnlqpa ltmigkyfyk krpianglam agspvflstl aplnqflfna fgwkgsflil
      181 gglllnccva gslmrpvgpr tvppvkkdve kgtgdsalhk nnkksfwqti nkyldlslfk
      241 hrgfliylsg nvimfigffa pivflapyak hkgideysaa fllsilafvd mfarpsmglv
      301 anskfirpki qyffsfavfy ngvchilcpl atnytglviy avffgfafgm vssvlfetlm
      361 dlvgaarfss avglvtivec cpvligpplg gwlvdvtgey qymyfvcgvi vvvssiwlfi
      421 gnainyrlla kekkledekq kaqkntdlke aepltnnene daanrddkal edpseretni
//
LOCUS       XP_053912646             480 aa            linear   VRT 09-MAR-2023
DEFINITION  monocarboxylate transporter 2 [Cuculus canorus].
ACCESSION   XP_053912646
VERSION     XP_053912646.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056671.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..480
                     /product="monocarboxylate transporter 2"
                     /calculated_mol_wt=52495
     Region          1..452
                     /region_name="2A0113"
                     /note="monocarboxylate transporter 1; TIGR00892"
                     /db_xref="CDD:273325"
     CDS             1..480
                     /gene="SLC16A7"
                     /coded_by="XM_054056671.1:159..1601"
                     /db_xref="GeneID:104062608"
ORIGIN      
        1 mppatgtpqy pppdggwgwv vvfgafisig fsyafpkait vffkeiqeif htsyseiawi
       61 ssimlavmya ggpissilvn kygsrpvmia ggilcsfgmi assfcnsvle lyicigvvgg
      121 lglafnlqpa ltmigkyfyk krpianglam agspvflstl aplnqflfna fgwkgsflil
      181 gglllnccva gslmrpvgpr tvppvkkdve kgtgdsalhk nnkksfwqti nkyldlslfk
      241 hrgfliylsg nvimfigffa pivflapyak hkgideysaa fllsilafvd mfarpsmglv
      301 anskfirpki qyffsfavfy ngvchilcpl atnytglviy avffgfafgm vssvlfetlm
      361 dlvgaarfss avglvtivec cpvligpplg gwlvdvtgey qymyfvcgvi vvvssiwlfi
      421 gnainyrlla kekkledekq kaqkntdlke aepltnnene daanrddkal edpseretni
//
LOCUS       XP_053912659            1522 aa            linear   VRT 09-MAR-2023
DEFINITION  UDP-glucose:glycoprotein glucosyltransferase 2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912659
VERSION     XP_053912659.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056684.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1522
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1522
                     /product="UDP-glucose:glycoprotein glucosyltransferase 2
                     isoform X1"
                     /calculated_mol_wt=173479
     Region          43..224
                     /region_name="Thioredoxin_12"
                     /note="Thioredoxin-like domain; pfam18400"
                     /db_xref="CDD:465748"
     Region          295..423
                     /region_name="Thioredoxin_13"
                     /note="Thioredoxin-like domain; pfam18401"
                     /db_xref="CDD:465749"
     Region          436..684
                     /region_name="Thioredoxin_14"
                     /note="Thioredoxin-like domain; pfam18402"
                     /db_xref="CDD:465750"
     Region          708..932
                     /region_name="Thioredoxin_15"
                     /note="Thioredoxin-like domain; pfam18403"
                     /db_xref="CDD:465751"
     Region          1092..1198
                     /region_name="UDP-g_GGTase"
                     /note="UDP-glucose:Glycoprotein Glucosyltransferase;
                     pfam06427"
                     /db_xref="CDD:461910"
     Region          1232..1498
                     /region_name="Glyco_transf_24"
                     /note="Glucosyltransferase 24; pfam18404"
                     /db_xref="CDD:436473"
     CDS             1..1522
                     /gene="UGGT2"
                     /coded_by="XM_054056684.1:65..4633"
                     /db_xref="GeneID:104057304"
ORIGIN      
        1 masrallpal lllalllaqp cpcggaaass ravtarlaak wpatplllea sefiaedgne
       61 kfwqfletvr eltiykrgds ehsyynlilk kagqflsnlq inllkfalsv raysptvqmf
      121 qqiaadeppp egcsafvvih ekhtcktnei kkllkkatkr prpylfkgdh kfptlkedgp
      181 vvilyaemgt kdfakfhkil sekaqkeeiv yilrhyvqkp ssrkmylsgy gvelaikste
      241 ykavddtqvk gandtkeeed geeesdvqgf lfgklkqlhp dlknnlkefk khliettnnm
      301 eplkvwelqd lsfqaaaqim aapvydalkv mkdiaqnfpi karsltrvav dkkmrseiea
      361 nqkhfhetlg iqpgearlfl nslhidldfh dpfsiletlk legkamhglh elgikeeils
      421 rfmrlhvhpt ddsyaldirh ssiiwinnie qdpsystwpa syqellkpsf pgviqqirrn
      481 lynlvlfvdp vredtgdymk laelfyhhnv plrigfvfil ntkeevdgne dagvalwrtf
      541 nyiaeesdtf qaftsiinly hevregdvlt vnevkdalrs eyphadvesi lgvhseydeg
      601 rkagatfykk tglgplpqal fngvpfnree mdaaeletvi lqriidatgf fqravfmgvl
      661 ndhinamdfl mdqhnvvsrm nptilgaerr yipfrstnvp fdvedfstfs fldsqdksav
      721 isdnmkyltk kgedalyavt iwiiadfdkp agrrllsntl khlktsshtr vgilnnpssk
      781 ikedntviar ailaafltqn nsnlksflsk ltkeetaksl aagtkitkfl vpgmddntfe
      841 kkyntlgldv ikthqmfcqe vlkllpgqma vtsngrvlgp ldenefyaed fnllekitys
      901 tsaekikaiv kemgnssksg sdlimkidal lsslpkteir qdvellkeqh svvkvspqqn
      961 epfydviaiv dpltreaqkm ahllivlkdi vnlklrlfln crsklsevpl ksfyrfvlep
     1021 elnyginkhl psdpvakfle lpesplltln mitpeswlve avnsscdldn ihlqdikgtv
     1081 iaeyeleyil leghcfdvtt gqpprglqft lgtkktpvmv dtivmanlgy fqlkanpgaw
     1141 tlrlregrsk eiyqvfsheg tdsiadqadv tvvlsnfrsk iikvqvqkkp dkineelltd
     1201 gktgkkgnra svkrlseesp tegkekksdi lnifsvasgh lyerflrimm lsvlrhtetp
     1261 vkfwflknyl sptfkdviph makkygfqye lvqykwprwl yqqtekqrii wgykilfldv
     1321 lfplavdkii fvdadqivrs dlkelrdldl dgapygytpf cdsrkemdgy rfwksgywas
     1381 hlgkrkyhis alyvvdlkkf rkiaagdrlr gqyqalsqdp nslsnldqdl pnnmihqvai
     1441 kslpqewlwc etwcddeskk kaktidlcnn pqtkepklka aarivpewvd ydseiqkliq
     1501 qiqkekknlt safqkglkhd el
//
LOCUS       XP_053912669            1266 aa            linear   VRT 09-MAR-2023
DEFINITION  UDP-glucose:glycoprotein glucosyltransferase 2 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912669
VERSION     XP_053912669.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056694.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1266
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1266
                     /product="UDP-glucose:glycoprotein glucosyltransferase 2
                     isoform X2"
                     /calculated_mol_wt=143115
     Region          43..224
                     /region_name="Thioredoxin_12"
                     /note="Thioredoxin-like domain; pfam18400"
                     /db_xref="CDD:465748"
     Region          295..423
                     /region_name="Thioredoxin_13"
                     /note="Thioredoxin-like domain; pfam18401"
                     /db_xref="CDD:465749"
     Region          436..684
                     /region_name="Thioredoxin_14"
                     /note="Thioredoxin-like domain; pfam18402"
                     /db_xref="CDD:465750"
     Region          708..932
                     /region_name="Thioredoxin_15"
                     /note="Thioredoxin-like domain; pfam18403"
                     /db_xref="CDD:465751"
     Region          1092..1198
                     /region_name="UDP-g_GGTase"
                     /note="UDP-glucose:Glycoprotein Glucosyltransferase;
                     pfam06427"
                     /db_xref="CDD:461910"
     Region          1231..>1249
                     /region_name="Glyco_tranf_GTA_type"
                     /note="Glycosyltransferase family A (GT-A) includes
                     diverse families of glycosyl transferases with a common
                     GT-A type structural fold; cl11394"
                     /db_xref="CDD:472172"
     CDS             1..1266
                     /gene="UGGT2"
                     /coded_by="XM_054056694.1:65..3865"
                     /db_xref="GeneID:104057304"
ORIGIN      
        1 masrallpal lllalllaqp cpcggaaass ravtarlaak wpatplllea sefiaedgne
       61 kfwqfletvr eltiykrgds ehsyynlilk kagqflsnlq inllkfalsv raysptvqmf
      121 qqiaadeppp egcsafvvih ekhtcktnei kkllkkatkr prpylfkgdh kfptlkedgp
      181 vvilyaemgt kdfakfhkil sekaqkeeiv yilrhyvqkp ssrkmylsgy gvelaikste
      241 ykavddtqvk gandtkeeed geeesdvqgf lfgklkqlhp dlknnlkefk khliettnnm
      301 eplkvwelqd lsfqaaaqim aapvydalkv mkdiaqnfpi karsltrvav dkkmrseiea
      361 nqkhfhetlg iqpgearlfl nslhidldfh dpfsiletlk legkamhglh elgikeeils
      421 rfmrlhvhpt ddsyaldirh ssiiwinnie qdpsystwpa syqellkpsf pgviqqirrn
      481 lynlvlfvdp vredtgdymk laelfyhhnv plrigfvfil ntkeevdgne dagvalwrtf
      541 nyiaeesdtf qaftsiinly hevregdvlt vnevkdalrs eyphadvesi lgvhseydeg
      601 rkagatfykk tglgplpqal fngvpfnree mdaaeletvi lqriidatgf fqravfmgvl
      661 ndhinamdfl mdqhnvvsrm nptilgaerr yipfrstnvp fdvedfstfs fldsqdksav
      721 isdnmkyltk kgedalyavt iwiiadfdkp agrrllsntl khlktsshtr vgilnnpssk
      781 ikedntviar ailaafltqn nsnlksflsk ltkeetaksl aagtkitkfl vpgmddntfe
      841 kkyntlgldv ikthqmfcqe vlkllpgqma vtsngrvlgp ldenefyaed fnllekitys
      901 tsaekikaiv kemgnssksg sdlimkidal lsslpkteir qdvellkeqh svvkvspqqn
      961 epfydviaiv dpltreaqkm ahllivlkdi vnlklrlfln crsklsevpl ksfyrfvlep
     1021 elnyginkhl psdpvakfle lpesplltln mitpeswlve avnsscdldn ihlqdikgtv
     1081 iaeyeleyil leghcfdvtt gqpprglqft lgtkktpvmv dtivmanlgy fqlkanpgaw
     1141 tlrlregrsk eiyqvfsheg tdsiadqadv tvvlsnfrsk iikvqvqkkp dkineelltd
     1201 gktgkkgnra svkrlseesp tegkekksdi lnifsvasgh lyerflrlif pqnydafcla
     1261 syrnts
//
LOCUS       XP_053912677             504 aa            linear   VRT 09-MAR-2023
DEFINITION  dnaJ homolog subfamily C member 3 [Cuculus canorus].
ACCESSION   XP_053912677
VERSION     XP_053912677.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056702.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..504
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..504
                     /product="dnaJ homolog subfamily C member 3"
                     /calculated_mol_wt=57245
     Region          40..334
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Site            order(41..42,45..46,48,72,75..76,79..80,82..83,106,
                     109..110,113..114,117)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          41..65
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          70..100
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          105..133
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          157..182
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(158..159,162..163,165,189,192..193,196..197,
                     199..200,223,226..227,230..231,234)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          187..217
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          222..250
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          256..281
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          301..335
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          <315..389
                     /region_name="TadD"
                     /note="Flp pilus assembly protein TadD, contains TPR
                     repeats [Intracellular trafficking, secretion, and
                     vesicular transport, Extracellular structures]; COG5010"
                     /db_xref="CDD:444034"
     Region          340..366
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          374..397
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          393..>495
                     /region_name="PRK14278"
                     /note="chaperone protein DnaJ; Provisional"
                     /db_xref="CDD:237654"
     CDS             1..504
                     /gene="DNAJC3"
                     /coded_by="XM_054056702.1:155..1669"
                     /db_xref="GeneID:104057303"
ORIGIN      
        1 mvspaasvgr lgsalpfllv lcdllyqgae cginaevekq lemgkkllaa gqladalshf
       61 haaidgdsdn yiayyrratv ylamgkskaa irdlskvvel kqdftsarlq rghlllkqgk
      121 fdeaeddfkn vlksnpsnne ekeaqtqltk sdelqrlhsq alsayqqedy eaaislldei
      181 lavcvwdael relraecyik egepskaisd lkaaaklknd nteafykisr iyyqlgdhel
      241 slsevreclk ldqdhkqcfs lykqvkklnk qiesaeefir egryedaisk ydsvmktepd
      301 vpvyatrake richclsknq qateaikvct evlqleptnv nalkdraeay lledlyeeai
      361 kdyetaqans endqqiregl eraqkmlkqs qkrdyykilg vkrnarkqei ikayrklasq
      421 whpdnfqsee ekkkaekkfi diaaakevlt dpemrrkfda gedpldaesq qgggnpfhrn
      481 wntwqgfnpf gsgggpftfk fhfs
//
LOCUS       XP_053912687             973 aa            linear   VRT 09-MAR-2023
DEFINITION  caseinolytic peptidase B protein homolog isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912687
VERSION     XP_053912687.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056712.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..973
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..973
                     /product="caseinolytic peptidase B protein homolog isoform
                     X1"
                     /calculated_mol_wt=104507
     Region          <6..385
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <430..582
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(430,434..435,438..440,442..443,447,450,459,461,463,
                     467..468,471..473,475..476,480,483,492,530,532,536..537,
                     540..542,544..545,549,552)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          430..459
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          461..492
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          530..555
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          <604..920
                     /region_name="ClpA"
                     /note="ATP-dependent Clp protease, ATP-binding subunit
                     ClpA [Posttranslational modification, protein turnover,
                     chaperones]; COG0542"
                     /db_xref="CDD:440308"
     CDS             1..973
                     /gene="CLPB"
                     /coded_by="XM_054056712.1:69..2990"
                     /db_xref="GeneID:104065032"
ORIGIN      
        1 mltslaarpp pppglarllr arlslspsrr grgawretae gsgaagprls psgaaggrre
       61 salsaglqrr aeaqggrqre rgdppavgrg apqamgrggp ptvglslrgs plsvgpdpeg
      121 splamglssr gsplamgrga pqamglsprg splamgrgap qtmglslrgs plsvgpdpeg
      181 spltmglslr gtplamgrga pqamglsprg splsvgpdpe gspftmglsp kgsplsvgld
      241 pegsplamgl ssrgsplamg rgapqtmgls prgsplsvgp dpegspltmg lssrgsplam
      301 grgappamgl ssrgspralg dppltvpppp lsmgpappqf lgfstlnmgp gsppamglis
      361 qgpplvfgvp hvtdgrsppa sepprafrgd krwcgsggdp gkhrsppraa vpavlaalal
      421 cyfkehrske dalleavrin dlsevtrlle dgvdvnarhr lgwtalmvaa isrnssvvki
      481 llaanadpnl gddfssvyet akekglhsle vlvtreddfn nrlnvranfk gctalhyavl
      541 addyltvkll ldggadplqk nemghtpldy areeeiknll kaseikfqee qrrreaeerr
      601 rfpleqrlke hiigqesaia tvgaairrke ngwydeehpl vflflgssgi gktelakqta
      661 kyihkdiqkg firldmsefq erhevakfig sppgyvghee ggqltkklrq cpnavvlfde
      721 vdkahpdvlt imlqlfdegr ltdgkgktid ckdaifimts nvaseeiaqh alqlrreale
      781 mskkkiaenl ddvqatekvt iskqfkekvi rpilkahfrr deflgrinei vyflpfchse
      841 liqlvnkele fwakkakarh nitllwdrev mdvladgynl hygarsikhe verrvvnqla
      901 aayeqdllpr gcvlriaved sdkqllkpkd napsgaenak iptlrleive kdskarkldi
      961 qtplnpenis yfl
//
LOCUS       XP_053912696             972 aa            linear   VRT 09-MAR-2023
DEFINITION  caseinolytic peptidase B protein homolog isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912696
VERSION     XP_053912696.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056721.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..972
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..972
                     /product="caseinolytic peptidase B protein homolog isoform
                     X2"
                     /calculated_mol_wt=104378
     Region          <6..385
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Site            order(427,429,433..434,437..439,441..442,446,449,458,460,
                     462,466..467,470..472,474..475,479,482,491,529,531,
                     535..536,539..541,543..544,548,551)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          427..458
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          <430..581
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          460..491
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          529..554
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          <603..919
                     /region_name="ClpA"
                     /note="ATP-dependent Clp protease, ATP-binding subunit
                     ClpA [Posttranslational modification, protein turnover,
                     chaperones]; COG0542"
                     /db_xref="CDD:440308"
     CDS             1..972
                     /gene="CLPB"
                     /coded_by="XM_054056721.1:66..2984"
                     /db_xref="GeneID:104065032"
ORIGIN      
        1 mltslaarpp pppglarllr arlslspsrr grgawretae gsgaagprls psgaaggrre
       61 salsaglqrr aeaqggrqre rgdppavgrg apqamgrggp ptvglslrgs plsvgpdpeg
      121 splamglssr gsplamgrga pqamglsprg splamgrgap qtmglslrgs plsvgpdpeg
      181 spltmglslr gtplamgrga pqamglsprg splsvgpdpe gspftmglsp kgsplsvgld
      241 pegsplamgl ssrgsplamg rgapqtmgls prgsplsvgp dpegspltmg lssrgsplam
      301 grgappamgl ssrgspralg dppltvpppp lsmgpappqf lgfstlnmgp gsppamglis
      361 qgpplvfgvp hvtdgrsppa sepprafrgd krwcgsggdp gkhrsppraa vpavlaalal
      421 cyfkehrskd alleavrind lsevtrlled gvdvnarhrl gwtalmvaai srnssvvkil
      481 laanadpnlg ddfssvyeta kekglhslev lvtreddfnn rlnvranfkg ctalhyavla
      541 ddyltvklll dggadplqkn emghtpldya reeeiknllk aseikfqeeq rrreaeerrr
      601 fpleqrlkeh iigqesaiat vgaairrken gwydeehplv flflgssgig ktelakqtak
      661 yihkdiqkgf irldmsefqe rhevakfigs ppgyvgheeg gqltkklrqc pnavvlfdev
      721 dkahpdvlti mlqlfdegrl tdgkgktidc kdaifimtsn vaseeiaqha lqlrrealem
      781 skkkiaenld dvqatekvti skqfkekvir pilkahfrrd eflgrineiv yflpfchsel
      841 iqlvnkelef wakkakarhn itllwdrevm dvladgynlh ygarsikhev errvvnqlaa
      901 ayeqdllprg cvlriaveds dkqllkpkdn apsgaenaki ptlrleivek dskarkldiq
      961 tplnpenisy fl
//
LOCUS       XP_053912704             947 aa            linear   VRT 09-MAR-2023
DEFINITION  caseinolytic peptidase B protein homolog isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053912704
VERSION     XP_053912704.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056729.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..947
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..947
                     /product="caseinolytic peptidase B protein homolog isoform
                     X3"
                     /calculated_mol_wt=101491
     Region          <6..385
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <430..582
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(430,434..435,438..440,442..443,447,450,459,461,463,
                     467..468,471..473,475..476,480,483,492,530,532,536..537,
                     540..542,544..545,549,552)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          430..459
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          461..492
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          530..555
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          <604..894
                     /region_name="ClpA"
                     /note="ATP-dependent Clp protease, ATP-binding subunit
                     ClpA [Posttranslational modification, protein turnover,
                     chaperones]; COG0542"
                     /db_xref="CDD:440308"
     CDS             1..947
                     /gene="CLPB"
                     /coded_by="XM_054056729.1:66..2909"
                     /db_xref="GeneID:104065032"
ORIGIN      
        1 mltslaarpp pppglarllr arlslspsrr grgawretae gsgaagprls psgaaggrre
       61 salsaglqrr aeaqggrqre rgdppavgrg apqamgrggp ptvglslrgs plsvgpdpeg
      121 splamglssr gsplamgrga pqamglsprg splamgrgap qtmglslrgs plsvgpdpeg
      181 spltmglslr gtplamgrga pqamglsprg splsvgpdpe gspftmglsp kgsplsvgld
      241 pegsplamgl ssrgsplamg rgapqtmgls prgsplsvgp dpegspltmg lssrgsplam
      301 grgappamgl ssrgspralg dppltvpppp lsmgpappqf lgfstlnmgp gsppamglis
      361 qgpplvfgvp hvtdgrsppa sepprafrgd krwcgsggdp gkhrsppraa vpavlaalal
      421 cyfkehrske dalleavrin dlsevtrlle dgvdvnarhr lgwtalmvaa isrnssvvki
      481 llaanadpnl gddfssvyet akekglhsle vlvtreddfn nrlnvranfk gctalhyavl
      541 addyltvkll ldggadplqk nemghtpldy areeeiknll kaseikfqee qrrreaeerr
      601 rfpleqrlke hiigqesaia tvgagktela kqtakyihkd iqkgfirldm sefqerheva
      661 kfigsppgyv gheeggqltk klrqcpnavv lfdevdkahp dvltimlqlf degrltdgkg
      721 ktidckdaif imtsnvasee iaqhalqlrr ealemskkki aenlddvqat ekvtiskqfk
      781 ekvirpilka hfrrdeflgr ineivyflpf chseliqlvn kelefwakka karhnitllw
      841 drevmdvlad gynlhygars ikheverrvv nqlaaayeqd llprgcvlri avedsdkqll
      901 kpkdnapsga enakiptlrl eivekdskar kldiqtplnp enisyfl
//
LOCUS       XP_053912711             944 aa            linear   VRT 09-MAR-2023
DEFINITION  caseinolytic peptidase B protein homolog isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053912711
VERSION     XP_053912711.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056736.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..944
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..944
                     /product="caseinolytic peptidase B protein homolog isoform
                     X4"
                     /calculated_mol_wt=101303
     Region          <6..385
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Site            order(430,434..435,438..440,442..443,451,454,463,465,503,
                     507..508,511..513,515..516,520,523,532,534,536,540..541,
                     544..545,549,552)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          430..463
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          <432..553
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          465..532
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          <575..891
                     /region_name="ClpA"
                     /note="ATP-dependent Clp protease, ATP-binding subunit
                     ClpA [Posttranslational modification, protein turnover,
                     chaperones]; COG0542"
                     /db_xref="CDD:440308"
     CDS             1..944
                     /gene="CLPB"
                     /coded_by="XM_054056736.1:66..2900"
                     /db_xref="GeneID:104065032"
ORIGIN      
        1 mltslaarpp pppglarllr arlslspsrr grgawretae gsgaagprls psgaaggrre
       61 salsaglqrr aeaqggrqre rgdppavgrg apqamgrggp ptvglslrgs plsvgpdpeg
      121 splamglssr gsplamgrga pqamglsprg splamgrgap qtmglslrgs plsvgpdpeg
      181 spltmglslr gtplamgrga pqamglsprg splsvgpdpe gspftmglsp kgsplsvgld
      241 pegsplamgl ssrgsplamg rgapqtmgls prgsplsvgp dpegspltmg lssrgsplam
      301 grgappamgl ssrgspralg dppltvpppp lsmgpappqf lgfstlnmgp gsppamglis
      361 qgpplvfgvp hvtdgrsppa sepprafrgd krwcgsggdp gkhrsppraa vpavlaalal
      421 cyfkehrske dalleavrin dlsevtsvvk illaanadpn lgddfssvye takekglhsl
      481 evlvtreddf nnrlnvranf kgctalhyav laddyltvkl lldggadplq knemghtpld
      541 yareeeiknl lkaseikfqe eqrrreaeer rrfpleqrlk ehiigqesai atvgaairrk
      601 engwydeehp lvflflgssg igktelakqt akyihkdiqk gfirldmsef qerhevakfi
      661 gsppgyvghe eggqltkklr qcpnavvlfd evdkahpdvl timlqlfdeg rltdgkgkti
      721 dckdaifimt snvaseeiaq halqlrreal emskkkiaen lddvqatekv tiskqfkekv
      781 irpilkahfr rdeflgrine ivyflpfchs eliqlvnkel efwakkakar hnitllwdre
      841 vmdvladgyn lhygarsikh everrvvnql aaayeqdllp rgcvlriave dsdkqllkpk
      901 dnapsgaena kiptlrleiv ekdskarkld iqtplnpeni syfl
//
LOCUS       XP_053912718             943 aa            linear   VRT 09-MAR-2023
DEFINITION  caseinolytic peptidase B protein homolog isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053912718
VERSION     XP_053912718.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056743.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..943
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..943
                     /product="caseinolytic peptidase B protein homolog isoform
                     X5"
                     /calculated_mol_wt=101174
     Region          <6..385
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Site            order(427,429,433..434,437..439,441..442,450,453,462,464,
                     502,506..507,510..512,514..515,519,522,531,533,535,
                     539..540,543..544,548,551)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          427..462
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          <431..552
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          464..531
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          <574..890
                     /region_name="ClpA"
                     /note="ATP-dependent Clp protease, ATP-binding subunit
                     ClpA [Posttranslational modification, protein turnover,
                     chaperones]; COG0542"
                     /db_xref="CDD:440308"
     CDS             1..943
                     /gene="CLPB"
                     /coded_by="XM_054056743.1:66..2897"
                     /db_xref="GeneID:104065032"
ORIGIN      
        1 mltslaarpp pppglarllr arlslspsrr grgawretae gsgaagprls psgaaggrre
       61 salsaglqrr aeaqggrqre rgdppavgrg apqamgrggp ptvglslrgs plsvgpdpeg
      121 splamglssr gsplamgrga pqamglsprg splamgrgap qtmglslrgs plsvgpdpeg
      181 spltmglslr gtplamgrga pqamglsprg splsvgpdpe gspftmglsp kgsplsvgld
      241 pegsplamgl ssrgsplamg rgapqtmgls prgsplsvgp dpegspltmg lssrgsplam
      301 grgappamgl ssrgspralg dppltvpppp lsmgpappqf lgfstlnmgp gsppamglis
      361 qgpplvfgvp hvtdgrsppa sepprafrgd krwcgsggdp gkhrsppraa vpavlaalal
      421 cyfkehrskd alleavrind lsevtsvvki llaanadpnl gddfssvyet akekglhsle
      481 vlvtreddfn nrlnvranfk gctalhyavl addyltvkll ldggadplqk nemghtpldy
      541 areeeiknll kaseikfqee qrrreaeerr rfpleqrlke hiigqesaia tvgaairrke
      601 ngwydeehpl vflflgssgi gktelakqta kyihkdiqkg firldmsefq erhevakfig
      661 sppgyvghee ggqltkklrq cpnavvlfde vdkahpdvlt imlqlfdegr ltdgkgktid
      721 ckdaifimts nvaseeiaqh alqlrreale mskkkiaenl ddvqatekvt iskqfkekvi
      781 rpilkahfrr deflgrinei vyflpfchse liqlvnkele fwakkakarh nitllwdrev
      841 mdvladgynl hygarsikhe verrvvnqla aayeqdllpr gcvlriaved sdkqllkpkd
      901 napsgaenak iptlrleive kdskarkldi qtplnpenis yfl
//
LOCUS       XP_053912729             270 aa            linear   VRT 09-MAR-2023
DEFINITION  paired mesoderm homeobox protein 2A [Cuculus canorus].
ACCESSION   XP_053912729
VERSION     XP_053912729.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056754.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..270
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..270
                     /product="paired mesoderm homeobox protein 2A"
                     /calculated_mol_wt=28883
     Region          88..144
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     CDS             1..270
                     /gene="PHOX2A"
                     /coded_by="XM_054056754.1:1..813"
                     /db_xref="GeneID:104054225"
ORIGIN      
        1 mdysylnsyd scvaameasg ydfnpcgqgg sfqygsvrgg fptgppcapl apscalgalr
       61 dhqpppyaav pykffsdpsg inekrkqrri rttftssqlk elervfaeth ypdiytreel
      121 alkidltear vqvwfqnrra kfrkqeraan skgsvgttap kksdprssse ddeskesncs
      181 ptpdstaslp galgnsggsl spspgtgtsm gsahpppslk gplwntagss snaatellks
      241 wqpneavpgp fsgvlssfhr kpnalkpnlf
//
LOCUS       XP_053912740             962 aa            linear   VRT 09-MAR-2023
DEFINITION  PAX3- and PAX7-binding protein 1 [Cuculus canorus].
ACCESSION   XP_053912740
VERSION     XP_053912740.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056765.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..962
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..962
                     /product="PAX3- and PAX7-binding protein 1"
                     /calculated_mol_wt=108326
     Region          640..851
                     /region_name="GCFC"
                     /note="GC-rich sequence DNA-binding factor-like protein;
                     pfam07842"
                     /db_xref="CDD:400273"
     CDS             1..962
                     /gene="PAXBP1"
                     /coded_by="XM_054056765.1:15..2903"
                     /db_xref="GeneID:104064792"
ORIGIN      
        1 mlgepglgrg eaagaraagm frkarrvnvr krneseeede erdeeapqep aagggegpge
       61 avalaagagl lplpagcvpl alpgspaafa caasygaalg lglglmggdg aalgalpppp
      121 ppppgnnglp grpkekkrpr enkevprasl lsfqdeeeet eevfkvkkss yskkivkqlk
      181 keykedleks kvrsevnspt dvepplektg qikdtgqedg tansehgeee mevesekeee
      241 kpkaggafss alsslnvlrp geipdaafih aarkkrqmar elgdftpvds epgksrlvre
      301 dendasdded ddekrrivft vkeksqrqki aeeigiegsd dealvageqd eelsrweqeq
      361 irkginipqv qpsqpaevnn lyyqntyqtl sygssygipy tyaaygssea ksqktdntvp
      421 fktpsnemtp vtidlvkkql kdrldsmkel hktnrqqyek hqqsredstk aieilegssg
      481 gigeqykflq emrgyvqdll ecfsekvpli nelesamhql ykqrasrlvq rrqddikdes
      541 sefsshsnka lmapnlesfg rdrviyqeqv krrtaerear rarrrqareq tgkmadhleg
      601 lssddeetst ditnfnlerd rilkesskvf edvlesfysi dciksqfeaw rskyftsykd
      661 ayiglclpkl fnplirlqll twtplegkcr dfetmlwfes llfygceeqe qvkddadisl
      721 lptivervvl pkltviseni wdpfsttqts rmvamvqklv dgypsvvnae nkntqtllka
      781 lllrmrrtld ddvfmplypk nvlenknsgp ylffqrqfws svkllgnflq wygilsnktl
      841 qelsidglln ryilmafqns eygedsikka qsviscfpkq wftnlkgekt isqlenfcry
      901 lvhladtiyr tsigcsdvek rnarehikqi ikllasvral dhavtvandh nvkelkilie
      961 gk
//
LOCUS       XP_053912753             224 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein C21orf62 homolog [Cuculus canorus].
ACCESSION   XP_053912753
VERSION     XP_053912753.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056778.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..224
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..224
                     /product="uncharacterized protein C21orf62 homolog"
                     /calculated_mol_wt=25653
     Region          14..224
                     /region_name="DUF4571"
                     /note="Domain of unknown function (DUF4571); pfam15137"
                     /db_xref="CDD:464523"
     CDS             1..224
                     /gene="C1H21orf62"
                     /coded_by="XM_054056778.1:231..905"
                     /db_xref="GeneID:104064761"
ORIGIN      
        1 mkpiafsafs fwlafllagf lgihttgsfv rsqknhtlif tkentirncs csvdirdcdy
       61 clanlmcnck tvlpstmekt iynshltiwf tdtsvlemll nftwvwdlkl sfcgttplpt
      121 eylaiwglqk lqvkkakgrf peqsvtiyss sndekdnsfv vynkdrqmlv ylsfldtslf
      181 neysllksys venissiteh fpsllysdvf stsdnksyvv tfiy
//
LOCUS       XP_053912759             224 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein C21orf62 homolog [Cuculus canorus].
ACCESSION   XP_053912759
VERSION     XP_053912759.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056784.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..224
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..224
                     /product="uncharacterized protein C21orf62 homolog"
                     /calculated_mol_wt=25653
     Region          14..224
                     /region_name="DUF4571"
                     /note="Domain of unknown function (DUF4571); pfam15137"
                     /db_xref="CDD:464523"
     CDS             1..224
                     /gene="C1H21orf62"
                     /coded_by="XM_054056784.1:1377..2051"
                     /db_xref="GeneID:104064761"
ORIGIN      
        1 mkpiafsafs fwlafllagf lgihttgsfv rsqknhtlif tkentirncs csvdirdcdy
       61 clanlmcnck tvlpstmekt iynshltiwf tdtsvlemll nftwvwdlkl sfcgttplpt
      121 eylaiwglqk lqvkkakgrf peqsvtiyss sndekdnsfv vynkdrqmlv ylsfldtslf
      181 neysllksys venissiteh fpsllysdvf stsdnksyvv tfiy
//
LOCUS       XP_053912765             224 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein C21orf62 homolog [Cuculus canorus].
ACCESSION   XP_053912765
VERSION     XP_053912765.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056790.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..224
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..224
                     /product="uncharacterized protein C21orf62 homolog"
                     /calculated_mol_wt=25653
     Region          14..224
                     /region_name="DUF4571"
                     /note="Domain of unknown function (DUF4571); pfam15137"
                     /db_xref="CDD:464523"
     CDS             1..224
                     /gene="C1H21orf62"
                     /coded_by="XM_054056790.1:175..849"
                     /db_xref="GeneID:104064761"
ORIGIN      
        1 mkpiafsafs fwlafllagf lgihttgsfv rsqknhtlif tkentirncs csvdirdcdy
       61 clanlmcnck tvlpstmekt iynshltiwf tdtsvlemll nftwvwdlkl sfcgttplpt
      121 eylaiwglqk lqvkkakgrf peqsvtiyss sndekdnsfv vynkdrqmlv ylsfldtslf
      181 neysllksys venissiteh fpsllysdvf stsdnksyvv tfiy
//
LOCUS       XP_053912778             868 aa            linear   VRT 09-MAR-2023
DEFINITION  inositol polyphosphate-4-phosphatase type I A isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912778
VERSION     XP_053912778.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056803.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..868
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..868
                     /product="inositol polyphosphate-4-phosphatase type I A
                     isoform X1"
                     /calculated_mol_wt=97255
     Region          44..163
                     /region_name="C2A_Copine"
                     /note="C2 domain first repeat in Copine; cd04048"
                     /db_xref="CDD:176013"
     Site            order(59,65,121,123,131)
                     /site_type="other"
                     /note="putative Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176013"
     CDS             1..868
                     /gene="INPP4A"
                     /coded_by="XM_054056803.1:447..3053"
                     /db_xref="GeneID:104056658"
ORIGIN      
        1 mtarehsprh gaksrtvqra stidvtsdml glslagniqd pdepilefsl acselltpsl
       61 drkpnsfvav svttppqafw tkhaqteiie gtnnpiflss iaffqdslin qmtqiklsvy
      121 dvkdrsqgtm yllgsgmftv kellqeknhr lhltlrstsk kistqsiccr saesdrvgni
      181 tvigwqmeek tdqrppvtrs pdtingrtvl pvdesltesl girskyaslr kdallksvfg
      241 gaicrmyrfp ttdgnhlril eqmaesvlsl hiprqfvkll leedaarvce leelgelspc
      301 weslrrqivt qyqtiiltyq enltdlhqyk gpsfkasslk adkklefvpt nlhiqrmrvq
      361 ddggsdqnyd ivtigapaah cqgfksgglr kklhkfeeak khsyeeccts tssqsiiyip
      421 qdivrakeiv aqintlktqv syyaerlsra akdrsangle rtlailadkt rqlvtvcdck
      481 llansihgln aarpdyiask asptsgegeq vmlrndqdtl varwtgrnsr sslqvdwhee
      541 ewekvwlnvd ksleciiqrv dkllqkerlq sdscedvfqc disctskkgn rdtraywinp
      601 edldetsssl ppssssppps stpscachsh rktncspape esgqgewsea lypllttltd
      661 cvammsdkak kamvfllmqd saptiglcls lqyrrdvvfc qtltalicgf iiklrnclhd
      721 dgflrqlyti gllaqfesll stygeelaml edmslgimdl rnvtfkvtqa tsntstdmlp
      781 vitgnrdgfn vriplpsalf dllpreiqsg mllrvqpvlf nvgineqqtl aekfgdtslq
      841 evinmeslvr lnsyfeqfke vlpddcky
//
LOCUS       XP_053912782             868 aa            linear   VRT 09-MAR-2023
DEFINITION  inositol polyphosphate-4-phosphatase type I A isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912782
VERSION     XP_053912782.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056807.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..868
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..868
                     /product="inositol polyphosphate-4-phosphatase type I A
                     isoform X1"
                     /calculated_mol_wt=97255
     Region          44..163
                     /region_name="C2A_Copine"
                     /note="C2 domain first repeat in Copine; cd04048"
                     /db_xref="CDD:176013"
     Site            order(59,65,121,123,131)
                     /site_type="other"
                     /note="putative Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176013"
     CDS             1..868
                     /gene="INPP4A"
                     /coded_by="XM_054056807.1:266..2872"
                     /db_xref="GeneID:104056658"
ORIGIN      
        1 mtarehsprh gaksrtvqra stidvtsdml glslagniqd pdepilefsl acselltpsl
       61 drkpnsfvav svttppqafw tkhaqteiie gtnnpiflss iaffqdslin qmtqiklsvy
      121 dvkdrsqgtm yllgsgmftv kellqeknhr lhltlrstsk kistqsiccr saesdrvgni
      181 tvigwqmeek tdqrppvtrs pdtingrtvl pvdesltesl girskyaslr kdallksvfg
      241 gaicrmyrfp ttdgnhlril eqmaesvlsl hiprqfvkll leedaarvce leelgelspc
      301 weslrrqivt qyqtiiltyq enltdlhqyk gpsfkasslk adkklefvpt nlhiqrmrvq
      361 ddggsdqnyd ivtigapaah cqgfksgglr kklhkfeeak khsyeeccts tssqsiiyip
      421 qdivrakeiv aqintlktqv syyaerlsra akdrsangle rtlailadkt rqlvtvcdck
      481 llansihgln aarpdyiask asptsgegeq vmlrndqdtl varwtgrnsr sslqvdwhee
      541 ewekvwlnvd ksleciiqrv dkllqkerlq sdscedvfqc disctskkgn rdtraywinp
      601 edldetsssl ppssssppps stpscachsh rktncspape esgqgewsea lypllttltd
      661 cvammsdkak kamvfllmqd saptiglcls lqyrrdvvfc qtltalicgf iiklrnclhd
      721 dgflrqlyti gllaqfesll stygeelaml edmslgimdl rnvtfkvtqa tsntstdmlp
      781 vitgnrdgfn vriplpsalf dllpreiqsg mllrvqpvlf nvgineqqtl aekfgdtslq
      841 evinmeslvr lnsyfeqfke vlpddcky
//
LOCUS       XP_053912788             868 aa            linear   VRT 09-MAR-2023
DEFINITION  inositol polyphosphate-4-phosphatase type I A isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912788
VERSION     XP_053912788.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056813.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..868
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..868
                     /product="inositol polyphosphate-4-phosphatase type I A
                     isoform X1"
                     /calculated_mol_wt=97255
     Region          44..163
                     /region_name="C2A_Copine"
                     /note="C2 domain first repeat in Copine; cd04048"
                     /db_xref="CDD:176013"
     Site            order(59,65,121,123,131)
                     /site_type="other"
                     /note="putative Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176013"
     CDS             1..868
                     /gene="INPP4A"
                     /coded_by="XM_054056813.1:255..2861"
                     /db_xref="GeneID:104056658"
ORIGIN      
        1 mtarehsprh gaksrtvqra stidvtsdml glslagniqd pdepilefsl acselltpsl
       61 drkpnsfvav svttppqafw tkhaqteiie gtnnpiflss iaffqdslin qmtqiklsvy
      121 dvkdrsqgtm yllgsgmftv kellqeknhr lhltlrstsk kistqsiccr saesdrvgni
      181 tvigwqmeek tdqrppvtrs pdtingrtvl pvdesltesl girskyaslr kdallksvfg
      241 gaicrmyrfp ttdgnhlril eqmaesvlsl hiprqfvkll leedaarvce leelgelspc
      301 weslrrqivt qyqtiiltyq enltdlhqyk gpsfkasslk adkklefvpt nlhiqrmrvq
      361 ddggsdqnyd ivtigapaah cqgfksgglr kklhkfeeak khsyeeccts tssqsiiyip
      421 qdivrakeiv aqintlktqv syyaerlsra akdrsangle rtlailadkt rqlvtvcdck
      481 llansihgln aarpdyiask asptsgegeq vmlrndqdtl varwtgrnsr sslqvdwhee
      541 ewekvwlnvd ksleciiqrv dkllqkerlq sdscedvfqc disctskkgn rdtraywinp
      601 edldetsssl ppssssppps stpscachsh rktncspape esgqgewsea lypllttltd
      661 cvammsdkak kamvfllmqd saptiglcls lqyrrdvvfc qtltalicgf iiklrnclhd
      721 dgflrqlyti gllaqfesll stygeelaml edmslgimdl rnvtfkvtqa tsntstdmlp
      781 vitgnrdgfn vriplpsalf dllpreiqsg mllrvqpvlf nvgineqqtl aekfgdtslq
      841 evinmeslvr lnsyfeqfke vlpddcky
//
LOCUS       XP_053912797             868 aa            linear   VRT 09-MAR-2023
DEFINITION  inositol polyphosphate-4-phosphatase type I A isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912797
VERSION     XP_053912797.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056822.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..868
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..868
                     /product="inositol polyphosphate-4-phosphatase type I A
                     isoform X1"
                     /calculated_mol_wt=97255
     Region          44..163
                     /region_name="C2A_Copine"
                     /note="C2 domain first repeat in Copine; cd04048"
                     /db_xref="CDD:176013"
     Site            order(59,65,121,123,131)
                     /site_type="other"
                     /note="putative Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176013"
     CDS             1..868
                     /gene="INPP4A"
                     /coded_by="XM_054056822.1:501..3107"
                     /db_xref="GeneID:104056658"
ORIGIN      
        1 mtarehsprh gaksrtvqra stidvtsdml glslagniqd pdepilefsl acselltpsl
       61 drkpnsfvav svttppqafw tkhaqteiie gtnnpiflss iaffqdslin qmtqiklsvy
      121 dvkdrsqgtm yllgsgmftv kellqeknhr lhltlrstsk kistqsiccr saesdrvgni
      181 tvigwqmeek tdqrppvtrs pdtingrtvl pvdesltesl girskyaslr kdallksvfg
      241 gaicrmyrfp ttdgnhlril eqmaesvlsl hiprqfvkll leedaarvce leelgelspc
      301 weslrrqivt qyqtiiltyq enltdlhqyk gpsfkasslk adkklefvpt nlhiqrmrvq
      361 ddggsdqnyd ivtigapaah cqgfksgglr kklhkfeeak khsyeeccts tssqsiiyip
      421 qdivrakeiv aqintlktqv syyaerlsra akdrsangle rtlailadkt rqlvtvcdck
      481 llansihgln aarpdyiask asptsgegeq vmlrndqdtl varwtgrnsr sslqvdwhee
      541 ewekvwlnvd ksleciiqrv dkllqkerlq sdscedvfqc disctskkgn rdtraywinp
      601 edldetsssl ppssssppps stpscachsh rktncspape esgqgewsea lypllttltd
      661 cvammsdkak kamvfllmqd saptiglcls lqyrrdvvfc qtltalicgf iiklrnclhd
      721 dgflrqlyti gllaqfesll stygeelaml edmslgimdl rnvtfkvtqa tsntstdmlp
      781 vitgnrdgfn vriplpsalf dllpreiqsg mllrvqpvlf nvgineqqtl aekfgdtslq
      841 evinmeslvr lnsyfeqfke vlpddcky
//
LOCUS       XP_053912803             868 aa            linear   VRT 09-MAR-2023
DEFINITION  inositol polyphosphate-4-phosphatase type I A isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912803
VERSION     XP_053912803.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056828.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..868
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..868
                     /product="inositol polyphosphate-4-phosphatase type I A
                     isoform X1"
                     /calculated_mol_wt=97255
     Region          44..163
                     /region_name="C2A_Copine"
                     /note="C2 domain first repeat in Copine; cd04048"
                     /db_xref="CDD:176013"
     Site            order(59,65,121,123,131)
                     /site_type="other"
                     /note="putative Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176013"
     CDS             1..868
                     /gene="INPP4A"
                     /coded_by="XM_054056828.1:243..2849"
                     /db_xref="GeneID:104056658"
ORIGIN      
        1 mtarehsprh gaksrtvqra stidvtsdml glslagniqd pdepilefsl acselltpsl
       61 drkpnsfvav svttppqafw tkhaqteiie gtnnpiflss iaffqdslin qmtqiklsvy
      121 dvkdrsqgtm yllgsgmftv kellqeknhr lhltlrstsk kistqsiccr saesdrvgni
      181 tvigwqmeek tdqrppvtrs pdtingrtvl pvdesltesl girskyaslr kdallksvfg
      241 gaicrmyrfp ttdgnhlril eqmaesvlsl hiprqfvkll leedaarvce leelgelspc
      301 weslrrqivt qyqtiiltyq enltdlhqyk gpsfkasslk adkklefvpt nlhiqrmrvq
      361 ddggsdqnyd ivtigapaah cqgfksgglr kklhkfeeak khsyeeccts tssqsiiyip
      421 qdivrakeiv aqintlktqv syyaerlsra akdrsangle rtlailadkt rqlvtvcdck
      481 llansihgln aarpdyiask asptsgegeq vmlrndqdtl varwtgrnsr sslqvdwhee
      541 ewekvwlnvd ksleciiqrv dkllqkerlq sdscedvfqc disctskkgn rdtraywinp
      601 edldetsssl ppssssppps stpscachsh rktncspape esgqgewsea lypllttltd
      661 cvammsdkak kamvfllmqd saptiglcls lqyrrdvvfc qtltalicgf iiklrnclhd
      721 dgflrqlyti gllaqfesll stygeelaml edmslgimdl rnvtfkvtqa tsntstdmlp
      781 vitgnrdgfn vriplpsalf dllpreiqsg mllrvqpvlf nvgineqqtl aekfgdtslq
      841 evinmeslvr lnsyfeqfke vlpddcky
//
LOCUS       XP_053912809             868 aa            linear   VRT 09-MAR-2023
DEFINITION  inositol polyphosphate-4-phosphatase type I A isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912809
VERSION     XP_053912809.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056834.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..868
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..868
                     /product="inositol polyphosphate-4-phosphatase type I A
                     isoform X1"
                     /calculated_mol_wt=97255
     Region          44..163
                     /region_name="C2A_Copine"
                     /note="C2 domain first repeat in Copine; cd04048"
                     /db_xref="CDD:176013"
     Site            order(59,65,121,123,131)
                     /site_type="other"
                     /note="putative Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176013"
     CDS             1..868
                     /gene="INPP4A"
                     /coded_by="XM_054056834.1:387..2993"
                     /db_xref="GeneID:104056658"
ORIGIN      
        1 mtarehsprh gaksrtvqra stidvtsdml glslagniqd pdepilefsl acselltpsl
       61 drkpnsfvav svttppqafw tkhaqteiie gtnnpiflss iaffqdslin qmtqiklsvy
      121 dvkdrsqgtm yllgsgmftv kellqeknhr lhltlrstsk kistqsiccr saesdrvgni
      181 tvigwqmeek tdqrppvtrs pdtingrtvl pvdesltesl girskyaslr kdallksvfg
      241 gaicrmyrfp ttdgnhlril eqmaesvlsl hiprqfvkll leedaarvce leelgelspc
      301 weslrrqivt qyqtiiltyq enltdlhqyk gpsfkasslk adkklefvpt nlhiqrmrvq
      361 ddggsdqnyd ivtigapaah cqgfksgglr kklhkfeeak khsyeeccts tssqsiiyip
      421 qdivrakeiv aqintlktqv syyaerlsra akdrsangle rtlailadkt rqlvtvcdck
      481 llansihgln aarpdyiask asptsgegeq vmlrndqdtl varwtgrnsr sslqvdwhee
      541 ewekvwlnvd ksleciiqrv dkllqkerlq sdscedvfqc disctskkgn rdtraywinp
      601 edldetsssl ppssssppps stpscachsh rktncspape esgqgewsea lypllttltd
      661 cvammsdkak kamvfllmqd saptiglcls lqyrrdvvfc qtltalicgf iiklrnclhd
      721 dgflrqlyti gllaqfesll stygeelaml edmslgimdl rnvtfkvtqa tsntstdmlp
      781 vitgnrdgfn vriplpsalf dllpreiqsg mllrvqpvlf nvgineqqtl aekfgdtslq
      841 evinmeslvr lnsyfeqfke vlpddcky
//
LOCUS       XP_053912811             823 aa            linear   VRT 09-MAR-2023
DEFINITION  inositol polyphosphate-4-phosphatase type I A isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912811
VERSION     XP_053912811.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056836.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..823
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..823
                     /product="inositol polyphosphate-4-phosphatase type I A
                     isoform X2"
                     /calculated_mol_wt=92417
     Region          44..163
                     /region_name="C2A_Copine"
                     /note="C2 domain first repeat in Copine; cd04048"
                     /db_xref="CDD:176013"
     Site            order(59,65,121,123,131)
                     /site_type="other"
                     /note="putative Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176013"
     CDS             1..823
                     /gene="INPP4A"
                     /coded_by="XM_054056836.1:444..2915"
                     /db_xref="GeneID:104056658"
ORIGIN      
        1 mtarehsprh gaksrtvqra stidvtsdml glslagniqd pdepilefsl acselltpsl
       61 drkpnsfvav svttppqafw tkhaqteiie gtnnpiflss iaffqdslin qmtqiklsvy
      121 dvkdrsqgtm yllgsgmftv kellqeknhr lhltlrstsk kistqsiccr saesdrvgni
      181 tvigwqmeek tdqrppvtrs pdtingrtvl pvdesltesl girskyaslr kdallksvfg
      241 gaicrmyrfp ttdgnhlril eqmaesvlsl hiprqfvkll leedaarvce leelgelspc
      301 weslrrqivt qyqtiiltyq enltdlhqyk gpsfkasslk adkklefvpt nlhiqrmrvq
      361 ddggsdqnyd ivtigapaah cqgfksgglr kklhkfeeak khsyeeccts tssqsiiyip
      421 qdivrakeiv aqintlktqv syyaerlsra akdrsangle rtlailadkt rqlvtvcdck
      481 llansihgln aarpdyiask asptsgegeq vmlrndqdtl varwtgrnsr sslqvdwhee
      541 ewekvwlnvd ksleciiqrv dkllqkerlq sdscedvfqc disctskkdc spapeesgqg
      601 ewsealypll ttltdcvamm sdkakkamvf llmqdsapti glclslqyrr dvvfcqtlta
      661 licgfiiklr nclhddgflr qlytigllaq fesllstyge elamledmsl gimdlrnvtf
      721 kvtqatsnts tdmlpvitgn rdgfnvripl psalfdllpr eiqsgmllrv qpvlfnvgin
      781 eqqtlaekfg dtslqevinm eslvrlnsyf eqfkevlpdd cky
//
LOCUS       XP_053912815             812 aa            linear   VRT 09-MAR-2023
DEFINITION  inositol polyphosphate-4-phosphatase type I A isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053912815
VERSION     XP_053912815.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056840.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..812
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..812
                     /product="inositol polyphosphate-4-phosphatase type I A
                     isoform X3"
                     /calculated_mol_wt=91316
     Region          44..163
                     /region_name="C2A_Copine"
                     /note="C2 domain first repeat in Copine; cd04048"
                     /db_xref="CDD:176013"
     Site            order(59,65,121,123,131)
                     /site_type="other"
                     /note="putative Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176013"
     CDS             1..812
                     /gene="INPP4A"
                     /coded_by="XM_054056840.1:445..2883"
                     /db_xref="GeneID:104056658"
ORIGIN      
        1 mtarehsprh gaksrtvqra stidvtsdml glslagniqd pdepilefsl acselltpsl
       61 drkpnsfvav svttppqafw tkhaqteiie gtnnpiflss iaffqdslin qmtqiklsvy
      121 dvkdrsqgtm yllgsgmftv kellqeknhr lhltlrstsk kistqsiccr saesdrvgni
      181 tvigwqmeek tdqrppvtrs pdtingrtvl pvdesltesl girskyaslr kdallksvfg
      241 gaicrmyrfp ttdgnhlril eqmaesvlsl hiprqfvkll leedaarvce leelgelspc
      301 weslrrqivt qyqtiiltyq enltdlhqyk gpsfkasslk adkklefvpt nlhiqrmrvq
      361 ddggsdqnyd ivtigapaah cqgfksgglr kklhkfeeak khsyeeccts tssqsiiyip
      421 qdivrakeiv aqintlktqv syyaerlsra akdrsangle rtlailadkt rqlvtvcdck
      481 llansihgln aarpdyiask asptsgegeq vmlrndqdtl varwtgrnsr sslqvdwhee
      541 ewekvwlnvd ksleciiqrv dkllqkerlq sdscedvfqc disctskkge wsealypllt
      601 tltdcvamms dkakkamvfl lmqdsaptig lclslqyrrd vvfcqtltal icgfiiklrn
      661 clhddgflrq lytigllaqf esllstygee lamledmslg imdlrnvtfk vtqatsntst
      721 dmlpvitgnr dgfnvriplp salfdllpre iqsgmllrvq pvlfnvgine qqtlaekfgd
      781 tslqevinme slvrlnsyfe qfkevlpddc ky
//
LOCUS       XP_053912823             811 aa            linear   VRT 09-MAR-2023
DEFINITION  inositol polyphosphate-4-phosphatase type I A isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053912823
VERSION     XP_053912823.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056848.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..811
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..811
                     /product="inositol polyphosphate-4-phosphatase type I A
                     isoform X4"
                     /calculated_mol_wt=91229
     Region          44..163
                     /region_name="C2A_Copine"
                     /note="C2 domain first repeat in Copine; cd04048"
                     /db_xref="CDD:176013"
     Site            order(59,65,121,123,131)
                     /site_type="other"
                     /note="putative Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176013"
     CDS             1..811
                     /gene="INPP4A"
                     /coded_by="XM_054056848.1:446..2881"
                     /db_xref="GeneID:104056658"
ORIGIN      
        1 mtarehsprh gaksrtvqra stidvtsdml glslagniqd pdepilefsl acselltpsl
       61 drkpnsfvav svttppqafw tkhaqteiie gtnnpiflss iaffqdslin qmtqiklsvy
      121 dvkdrsqgtm yllgsgmftv kellqeknhr lhltlrstsk kistqsiccr saesdrvgni
      181 tvigwqmeek tdqrppvtrs pdtingrtvl pvdesltesl girskyaslr kdallksvfg
      241 gaicrmyrfp ttdgnhlril eqmaesvlsl hiprqfvkll leedaarvce leelgelspc
      301 weslrrqivt qyqtiiltyq enltdlhqyk gpsfkasslk adkklefvpt nlhiqrmrvq
      361 ddggsdqnyd ivtigapaah cqgfksgglr kklhkfeeak khyeecctst ssqsiiyipq
      421 divrakeiva qintlktqvs yyaerlsraa kdrsangler tlailadktr qlvtvcdckl
      481 lansihglna arpdyiaska sptsgegeqv mlrndqdtlv arwtgrnsrs slqvdwheee
      541 wekvwlnvdk sleciiqrvd kllqkerlqs dscedvfqcd isctskkgew sealyplltt
      601 ltdcvammsd kakkamvfll mqdsaptigl clslqyrrdv vfcqtltali cgfiiklrnc
      661 lhddgflrql ytigllaqfe sllstygeel amledmslgi mdlrnvtfkv tqatsntstd
      721 mlpvitgnrd gfnvriplps alfdllprei qsgmllrvqp vlfnvgineq qtlaekfgdt
      781 slqevinmes lvrlnsyfeq fkevlpddck y
//
LOCUS       XP_053912826             809 aa            linear   VRT 09-MAR-2023
DEFINITION  inositol polyphosphate-4-phosphatase type I A isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053912826
VERSION     XP_053912826.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056851.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..809
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..809
                     /product="inositol polyphosphate-4-phosphatase type I A
                     isoform X5"
                     /calculated_mol_wt=90893
     Region          44..157
                     /region_name="C2A_Copine"
                     /note="C2 domain first repeat in Copine; cd04048"
                     /db_xref="CDD:176013"
     Site            order(59,65,121,123,131)
                     /site_type="other"
                     /note="putative Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176013"
     CDS             1..809
                     /gene="INPP4A"
                     /coded_by="XM_054056851.1:442..2871"
                     /db_xref="GeneID:104056658"
ORIGIN      
        1 mtarehsprh gaksrtvqra stidvtsdml glslagniqd pdepilefsl acselltpsl
       61 drkpnsfvav svttppqafw tkhaqteiie gtnnpiflss iaffqdslin qmtqiklsvy
      121 dvkdrsqgtm yllgsgmftv kellqeknhr lhltlrsaes drvgnitvig wqmeektdqr
      181 ppvtrspdti ngrtvlpvde slteslgirs kyaslrkdal lksvfggaic rmyrfpttdg
      241 nhlrileqma esvlslhipr qfvkllleed aarvceleel gelspcwesl rrqivtqyqt
      301 iiltyqenlt dlhqykgpsf kasslkadkk lefvptnlhi qrmrvqddgg sdqnydivti
      361 gapaahcqgf ksgglrkklh kfeeakkhsy eecctstssq siiyipqdiv rakeivaqin
      421 tlktqvsyya erlsraakdr sanglertla iladktrqlv tvcdckllan sihglnaarp
      481 dyiaskaspt sgegeqvmlr ndqdtlvarw tgrnsrsslq vdwheeewek vwlnvdksle
      541 ciiqrvdkll qkerlqsdsc edvfqcdisc tskkdcspap eesgqgewse alypllttlt
      601 dcvammsdka kkamvfllmq dsaptiglcl slqyrrdvvf cqtltalicg fiiklrnclh
      661 ddgflrqlyt igllaqfesl lstygeelam ledmslgimd lrnvtfkvtq atsntstdml
      721 pvitgnrdgf nvriplpsal fdllpreiqs gmllrvqpvl fnvgineqqt laekfgdtsl
      781 qevinmeslv rlnsyfeqfk evlpddcky
//
LOCUS       XP_053912831             803 aa            linear   VRT 09-MAR-2023
DEFINITION  inositol polyphosphate-4-phosphatase type I A isoform X6 [Cuculus
            canorus].
ACCESSION   XP_053912831
VERSION     XP_053912831.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056856.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..803
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..803
                     /product="inositol polyphosphate-4-phosphatase type I A
                     isoform X6"
                     /calculated_mol_wt=90179
     Region          44..157
                     /region_name="C2A_Copine"
                     /note="C2 domain first repeat in Copine; cd04048"
                     /db_xref="CDD:176013"
     Site            order(59,65,121,123,131)
                     /site_type="other"
                     /note="putative Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176013"
     CDS             1..803
                     /gene="INPP4A"
                     /coded_by="XM_054056856.1:442..2853"
                     /db_xref="GeneID:104056658"
ORIGIN      
        1 mtarehsprh gaksrtvqra stidvtsdml glslagniqd pdepilefsl acselltpsl
       61 drkpnsfvav svttppqafw tkhaqteiie gtnnpiflss iaffqdslin qmtqiklsvy
      121 dvkdrsqgtm yllgsgmftv kellqeknhr lhltlrsaes drvgnitvig wqmeektdqr
      181 ppvtrspdti ngrtvlpvde slteslgirs kyaslrkdal lksvfggaic rmyrfpttdg
      241 nhlrileqma esvlslhipr qfvkllleed aarvceleel gelspcwesl rrqivtqyqt
      301 iiltyqenlt dlhqykgpsf kasslkadkk lefvptnlhi qrmrvqddgg sdqnydivti
      361 gapaahcqgf ksgglrkklh kfeeakkhts tssqsiiyip qdivrakeiv aqintlktqv
      421 syyaerlsra akdrsangle rtlailadkt rqlvtvcdck llansihgln aarpdyiask
      481 asptsgegeq vmlrndqdtl varwtgrnsr sslqvdwhee ewekvwlnvd ksleciiqrv
      541 dkllqkerlq sdscedvfqc disctskkdc spapeesgqg ewsealypll ttltdcvamm
      601 sdkakkamvf llmqdsapti glclslqyrr dvvfcqtlta licgfiiklr nclhddgflr
      661 qlytigllaq fesllstyge elamledmsl gimdlrnvtf kvtqatsnts tdmlpvitgn
      721 rdgfnvripl psalfdllpr eiqsgmllrv qpvlfnvgin eqqtlaekfg dtslqevinm
      781 eslvrlnsyf eqfkevlpdd cky
//
LOCUS       XP_009556228             983 aa            linear   VRT 09-MAR-2023
DEFINITION  inositol polyphosphate-4-phosphatase type I A isoform X7 [Cuculus
            canorus].
ACCESSION   XP_009556228
VERSION     XP_009556228.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557933.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..983
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..983
                     /product="inositol polyphosphate-4-phosphatase type I A
                     isoform X7"
                     /calculated_mol_wt=110531
     Region          44..157
                     /region_name="C2A_Copine"
                     /note="C2 domain first repeat in Copine; cd04048"
                     /db_xref="CDD:176013"
     Site            order(59,65,121,123,131)
                     /site_type="other"
                     /note="putative Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176013"
     CDS             1..983
                     /gene="INPP4A"
                     /coded_by="XM_009557933.2:446..3397"
                     /db_xref="GeneID:104056658"
ORIGIN      
        1 mtarehsprh gaksrtvqra stidvtsdml glslagniqd pdepilefsl acselltpsl
       61 drkpnsfvav svttppqafw tkhaqteiie gtnnpiflss iaffqdslin qmtqiklsvy
      121 dvkdrsqgtm yllgsgmftv kellqeknhr lhltlrsaes drvgnitvig wqmeektdqr
      181 ppvtrspdti ngrtvlpvde slteslgirs kyaslrkdal lksvfggaic rmyrfpttdg
      241 nhlrileqma esvlslhipr qfvkllleed aarvceleel gelspcwesl rrqivtqyqt
      301 iiltyqenlt dlhqykgpsf kasslkadkk lefvptnlhi qrmrvqddgg sdqnydivti
      361 gapaahcqgf ksgglrkklh kfeeakkhye ecctstssqs iiyipqdivr akeivaqint
      421 lktqvsyyae rlsraakdrs anglertlai ladktrqlvt vcdckllans ihglnaarpd
      481 yiaskaspts gegeqvmlrn dqdtlvarwt grnsrsslqv dwheeewekv wlnvdkslec
      541 iiqrvdkllq kerlqsdsce dvfqcdisct skkgnrdtra ywinpedlde tssslppsss
      601 spppsstpsc achshrktnc spapeesgqg ewsealypll ttltdcvamm sdkakkamvf
      661 llmqdsapti glclslqyrr dvvfcqtlta licgfiiklr nclhddgflr qlytigllaq
      721 fesllstyge elamledmsl gimdlrnvtf kvtqatsnts tdmlpvitgn rdgfnvripl
      781 psalfdllpr eiqsgmllrv qpvlfnvgin eqqtlaekfg dtslqevinm eslvrlnsyf
      841 eqfkevlpdd clprsrsqtc lpellrflgq nvharknknv dilwqaaeic rrlngvrfts
      901 cksakdrtam svtleqclil qhehgmapqv ftqalecmrs egcrrentmk nvgcrkyafn
      961 slqlkafpky yrppegtygk vet
//
LOCUS       XP_053912840            1087 aa            linear   VRT 09-MAR-2023
DEFINITION  SLIT-ROBO Rho GTPase-activating protein 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912840
VERSION     XP_053912840.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056865.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1087
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1087
                     /product="SLIT-ROBO Rho GTPase-activating protein 1
                     isoform X1"
                     /calculated_mol_wt=124436
     Region          26..278
                     /region_name="F-BAR_srGAP1"
                     /note="The F-BAR (FES-CIP4 Homology and
                     Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating
                     Protein 1; cd07683"
                     /db_xref="CDD:153367"
     Site            order(31,34,41,44..45,48,51..52,55..56,59,63,66,70,110,
                     113,212,216,241,245,248,251..252,255,259,262,266,270,
                     273..274,277)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:153367"
     Region          502..689
                     /region_name="RhoGAP_srGAP"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain present in srGAPs. srGAPs are
                     components of the intracellular part of Slit-Robo
                     signalling pathway that is important for axon guidance and
                     cell migration. srGAPs contain an...; cd04383"
                     /db_xref="CDD:239848"
     Site            order(542,581,585,654,657..658,680)
                     /site_type="other"
                     /note="putative GTPase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:239848"
     Site            542
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239848"
     Region          747..799
                     /region_name="SH3_srGAP1-3"
                     /note="Src homology 3 domain of Slit-Robo GTPase
                     Activating Proteins 1, 2, and 3; cd11955"
                     /db_xref="CDD:212888"
     Site            order(752,754,757,761,779..780,793,795..796)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212888"
     CDS             1..1087
                     /gene="SRGAP1"
                     /coded_by="XM_054056865.1:391..3654"
                     /db_xref="GeneID:104055182"
ORIGIN      
        1 mstpsrfkkd keiiaeyesq vkeiraqlie qqkcleqqte mrvqllqdlq dffrkkseie
       61 meysrnlekl aerfmaktrs tkdhqqykkd qnllspvncw ylllnqvrre skdhatlsdi
      121 ylnnvimrfm qisedstrmf kkskeiafql hedlmkvlne lytvmktyhm yhaesisaes
      181 klkeaekqee kqigrsgdpv fhirleerhq rrssvkkiek mkekrqakys enklksikar
      241 neylltleat nasvfkyyih dlsdlidccd lgyhaslnra lrtylsaeyn letsrhegld
      301 iienavdsle prsdkqrfme myptafcppm kfefqshmgd evcqvtaqqp vqaelmlryq
      361 qlqsrlatlk ieneevkktt eatlqtiqdm vtiedydvse cfqhsrstes vkstvsetyl
      421 skpsiakrra nqqeteqfyf mkfreylegs nlitklqakh dllqrtlgeg hraeymttrp
      481 pnlppkpqkh rkprprsqfs aklfngdles fikdsgqvip livescirfi nlyglqhqgi
      541 frvsgsqvev ndiknsferg enpladdqsn hdinsvagvl klyfrglenp vfpkerfndl
      601 isciridnlc eralhirkll ltlprsvliv mrylfaflnh lsqysdenmm dpynlaicfg
      661 ptlmpvpdiq dqvscqahvn eiiktiiihh eaifpdakel dgpvyekcma gddycdspys
      721 ehgtleevdq dastephtse decepieaia kfdyvgrsar elsfkkgasl llyhrasedw
      781 wegrhngidg lvphqyivvq dmddtfsdtl sqkadseass gpitedksss kdmnsptdch
      841 sdsylgrqrk rsepppplrr pgrssdghcp vhpphplsns slelgspnla thcsprallq
      901 nrnlnadspe rrrrpghgsl tnisrhdslk kidsppirrs tssgqytgfn dhkpldpesi
      961 aqdieetmnt alnelreler qssakhapdv vldtleqmkn tptpatstes lsplhsvvlr
     1021 ssephirrst ssssdtmstf kpmvaprmgv qlkppalrpk pivlpktnps igpsppsqgp
     1081 adksctm
//
LOCUS       XP_053912845            1064 aa            linear   VRT 09-MAR-2023
DEFINITION  SLIT-ROBO Rho GTPase-activating protein 1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912845
VERSION     XP_053912845.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056870.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1064
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1064
                     /product="SLIT-ROBO Rho GTPase-activating protein 1
                     isoform X2"
                     /calculated_mol_wt=121815
     Region          26..278
                     /region_name="F-BAR_srGAP1"
                     /note="The F-BAR (FES-CIP4 Homology and
                     Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating
                     Protein 1; cd07683"
                     /db_xref="CDD:153367"
     Site            order(31,34,41,44..45,48,51..52,55..56,59,63,66,70,110,
                     113,212,216,241,245,248,251..252,255,259,262,266,270,
                     273..274,277)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:153367"
     Region          482..666
                     /region_name="RhoGAP_srGAP"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain present in srGAPs. srGAPs are
                     components of the intracellular part of Slit-Robo
                     signalling pathway that is important for axon guidance and
                     cell migration. srGAPs contain an...; cd04383"
                     /db_xref="CDD:239848"
     Site            order(519,558,562,631,634..635,657)
                     /site_type="other"
                     /note="putative GTPase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:239848"
     Site            519
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239848"
     Region          724..776
                     /region_name="SH3_srGAP1-3"
                     /note="Src homology 3 domain of Slit-Robo GTPase
                     Activating Proteins 1, 2, and 3; cd11955"
                     /db_xref="CDD:212888"
     Site            order(729,731,734,738,756..757,770,772..773)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212888"
     CDS             1..1064
                     /gene="SRGAP1"
                     /coded_by="XM_054056870.1:391..3585"
                     /db_xref="GeneID:104055182"
ORIGIN      
        1 mstpsrfkkd keiiaeyesq vkeiraqlie qqkcleqqte mrvqllqdlq dffrkkseie
       61 meysrnlekl aerfmaktrs tkdhqqykkd qnllspvncw ylllnqvrre skdhatlsdi
      121 ylnnvimrfm qisedstrmf kkskeiafql hedlmkvlne lytvmktyhm yhaesisaes
      181 klkeaekqee kqigrsgdpv fhirleerhq rrssvkkiek mkekrqakys enklksikar
      241 neylltleat nasvfkyyih dlsdlidccd lgyhaslnra lrtylsaeyn letsrhegld
      301 iienavdsle prsdkqrfme myptafcppm kfefqshmgd evcqvtaqqp vqaelmlryq
      361 qlqsrlatlk ieneevkktt eatlqtiqdm vtiedydvse cfqhsrstes vkstvsetyl
      421 skpsiakrra nqqeteqfyf mkfreylegs nlitklqakh dllqrtlgeg hraeymttsr
      481 grrnshtrhq dsgqvipliv escirfinly glqhqgifrv sgsqvevndi knsfergenp
      541 laddqsnhdi nsvagvlkly frglenpvfp kerfndlisc iridnlcera lhirkllltl
      601 prsvlivmry lfaflnhlsq ysdenmmdpy nlaicfgptl mpvpdiqdqv scqahvneii
      661 ktiiihheai fpdakeldgp vyekcmagdd ycdspysehg tleevdqdas tephtsedec
      721 epieaiakfd yvgrsarels fkkgasllly hrasedwweg rhngidglvp hqyivvqdmd
      781 dtfsdtlsqk adseassgpi tedkssskdm nsptdchsds ylgrqrkrse pppplrrpgr
      841 ssdghcpvhp phplsnssle lgspnlathc sprallqnrn lnadsperrr rpghgsltni
      901 srhdslkkid sppirrstss gqytgfndhk pldpesiaqd ieetmntaln elrelerqss
      961 akhapdvvld tleqmkntpt patsteslsp lhsvvlrsse phirrstsss sdtmstfkpm
     1021 vaprmgvqlk ppalrpkpiv lpktnpsigp sppsqgpadk sctm
//
LOCUS       XP_053912858             440 aa            linear   VRT 09-MAR-2023
DEFINITION  ribitol-5-phosphate xylosyltransferase 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912858
VERSION     XP_053912858.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056883.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..440
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..440
                     /product="ribitol-5-phosphate xylosyltransferase 1 isoform
                     X1"
                     /calculated_mol_wt=50480
     Region          97..434
                     /region_name="RXYLT1-like"
                     /note="ribitol-5-phosphate xylosyltransferase 1, and
                     related proteins; cd21099"
                     /db_xref="CDD:467845"
     CDS             1..440
                     /gene="RXYLT1"
                     /coded_by="XM_054056883.1:44..1366"
                     /db_xref="GeneID:104055181"
ORIGIN      
        1 mrgarrrlcs allvayglfs lyaaysvflr phraavprpp prdrrgarah vsfgneewnp
       61 weedekneqv asqqryeanv qmiknarshl eetsltvqiw gkaavglylw qhifegqlep
      121 advtaqrreg sqtvgktyfs fitgpsvvpg yfsveaenvv lvlngrekak ityatqwlhy
      181 aqtliqthki qhvavvllgn eqcnnewiqp ylkrhggfvn llfvtydcal vneedifqwp
      241 lgvatyrnfp vvepswsmlh dprshlcnfl gtiyknssre tlmgilkqdg ldklcwiaar
      301 eqwqpqetne sfknyqdall qsdltlcpvg intecyriye acsygslpvi edvmtpgdcg
      361 nssmyhsapl qllkamgapf ifiknweelp avlekekkms lqekiqrrkk liewyrnfka
      421 rmrqkfinal eksflasdkg
//
LOCUS       XP_053912867             418 aa            linear   VRT 09-MAR-2023
DEFINITION  ribitol-5-phosphate xylosyltransferase 1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912867
VERSION     XP_053912867.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056892.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..418
                     /product="ribitol-5-phosphate xylosyltransferase 1 isoform
                     X2"
                     /calculated_mol_wt=47791
     Region          75..412
                     /region_name="RXYLT1-like"
                     /note="ribitol-5-phosphate xylosyltransferase 1, and
                     related proteins; cd21099"
                     /db_xref="CDD:467845"
     CDS             1..418
                     /gene="RXYLT1"
                     /coded_by="XM_054056892.1:16..1272"
                     /db_xref="GeneID:104055181"
ORIGIN      
        1 mggcgvegkl kiirfqppch gravllahvs fgneewnpwe edekneqvas qqryeanvqm
       61 iknarshlee tsltvqiwgk aavglylwqh ifegqlepad vtaqrregsq tvgktyfsfi
      121 tgpsvvpgyf sveaenvvlv lngrekakit yatqwlhyaq tliqthkiqh vavvllgneq
      181 cnnewiqpyl krhggfvnll fvtydcalvn eedifqwplg vatyrnfpvv epswsmlhdp
      241 rshlcnflgt iyknssretl mgilkqdgld klcwiaareq wqpqetnesf knyqdallqs
      301 dltlcpvgin tecyriyeac sygslpvied vmtpgdcgns smyhsaplql lkamgapfif
      361 iknweelpav lekekkmslq ekiqrrkkli ewyrnfkarm rqkfinalek sflasdkg
//
LOCUS       XP_053912875             338 aa            linear   VRT 09-MAR-2023
DEFINITION  ribitol-5-phosphate xylosyltransferase 1 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053912875
VERSION     XP_053912875.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056900.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..338
                     /product="ribitol-5-phosphate xylosyltransferase 1 isoform
                     X3"
                     /calculated_mol_wt=38778
     Region          3..332
                     /region_name="RXYLT1-like"
                     /note="ribitol-5-phosphate xylosyltransferase 1, and
                     related proteins; cd21099"
                     /db_xref="CDD:467845"
     CDS             1..338
                     /gene="RXYLT1"
                     /coded_by="XM_054056900.1:178..1194"
                     /db_xref="GeneID:104055181"
ORIGIN      
        1 mdvglylwqh ifegqlepad vtaqrregsq tvgktyfsfi tgpsvvpgyf sveaenvvlv
       61 lngrekakit yatqwlhyaq tliqthkiqh vavvllgneq cnnewiqpyl krhggfvnll
      121 fvtydcalvn eedifqwplg vatyrnfpvv epswsmlhdp rshlcnflgt iyknssretl
      181 mgilkqdgld klcwiaareq wqpqetnesf knyqdallqs dltlcpvgin tecyriyeac
      241 sygslpvied vmtpgdcgns smyhsaplql lkamgapfif iknweelpav lekekkmslq
      301 ekiqrrkkli ewyrnfkarm rqkfinalek sflasdkg
//
LOCUS       XP_053912891             751 aa            linear   VRT 09-MAR-2023
DEFINITION  putative N-acetylated-alpha-linked acidic dipeptidase isoform X1
            [Cuculus canorus].
ACCESSION   XP_053912891
VERSION     XP_053912891.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056916.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..751
                     /product="putative N-acetylated-alpha-linked acidic
                     dipeptidase isoform X1"
                     /calculated_mol_wt=83704
     Region          59..>116
                     /region_name="Zinc_peptidase_like"
                     /note="Zinc peptidases M18, M20, M28, and M42; cl14876"
                     /db_xref="CDD:472712"
     Region          121..347
                     /region_name="PA_GCPII_like"
                     /note="Protease-associated domain containing protein,
                     glutamate carboxypeptidase II (GCPII)-like. This group
                     contains various PA domain-containing proteins similar to
                     GCPII including, GCPIII (NAALADase2) and NAALADase L.
                     These proteins belong to the peptidase...; cd02121"
                     /db_xref="CDD:239036"
     Site            order(165,254..256,258,264..267,270)
                     /site_type="other"
                     /note="apical/protease domain interface [polypeptide
                     binding]"
                     /db_xref="CDD:239036"
     Site            order(211,258)
                     /site_type="other"
                     /note="substrate binding [chemical binding]"
                     /db_xref="CDD:239036"
     Site            order(273..274,276,278)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239036"
     Region          <355..596
                     /region_name="M28_PSMA_like"
                     /note="M28 Zn-peptidase prostate-specific membrane
                     antigen; cd08022"
                     /db_xref="CDD:349942"
     Site            order(369..370,372,416,437..438,445)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:349942"
     Site            order(378,388,425..426,428..429,454..455,457..458,
                     519..520,537,550,553..554)
                     /site_type="active"
                     /db_xref="CDD:349942"
     Region          628..748
                     /region_name="TFR_dimer"
                     /note="Transferrin receptor-like dimerization domain;
                     pfam04253"
                     /db_xref="CDD:461238"
     CDS             1..751
                     /gene="LOC104064197"
                     /coded_by="XM_054056916.1:71..2326"
                     /db_xref="GeneID:104064197"
ORIGIN      
        1 mwaplgalte psgpransgr cwaavlgaaa gllllgfllg wfakptekkt svsphenvka
       61 afmaemkaen ikqflhnftr lphlagtken lhlaqqiqae wkefgldhvq lvhydvllsy
      121 pdatkpnyis iidehgneif ntslsepppp gyeavrdvvp pysafsaqgm pegelvyvny
      181 grtedffkle rdmginctgk iviarygkif rgnkvknael agakgvilys dpadyctsgv
      241 dpypngwnlp gggaqrgnvl nlngagdplt pgypakeyty rldkasgvgl pkipvhpigy
      301 hdaevllrnm ggdapphssw kgslnvsyni gpgftsnyst rkvkmhihsn nevrriynvi
      361 gtirgklepd ryvilgghrd swvfggidpq sgaavvheiv rsfgklkrkg wrprrtvifa
      421 swdaeefgll gstewaeena kvlqargvay inadssvegn ytlrvdctpl myglvysltk
      481 eipspdegfe gkslyeswyk knpsrehkev prinklgsgn dfevffqrlg iasgrarysk
      541 nwnvekyssy pvyhsvyety eiverfydpt fknhltvaqv rgglvfelas svvlpfdcrd
      601 yasavsnyah iiynlsrnhe eelatysvsf dalfsavknf tevaasfher leqidinnli
      661 avrtlndqlm flerafidpl glpgrpfyrh vifapsshnk yagesfpgiy dalfdiknka
      721 dkheaweevk rqisiaaftv qaaaetlkev a
//
LOCUS       XP_053912896             715 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate carboxypeptidase 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912896
VERSION     XP_053912896.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056921.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..715
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..715
                     /product="glutamate carboxypeptidase 2 isoform X2"
                     /calculated_mol_wt=80175
     Region          23..>80
                     /region_name="Zinc_peptidase_like"
                     /note="Zinc peptidases M18, M20, M28, and M42; cl14876"
                     /db_xref="CDD:472712"
     Region          85..311
                     /region_name="PA_GCPII_like"
                     /note="Protease-associated domain containing protein,
                     glutamate carboxypeptidase II (GCPII)-like. This group
                     contains various PA domain-containing proteins similar to
                     GCPII including, GCPIII (NAALADase2) and NAALADase L.
                     These proteins belong to the peptidase...; cd02121"
                     /db_xref="CDD:239036"
     Site            order(129,218..220,222,228..231,234)
                     /site_type="other"
                     /note="apical/protease domain interface [polypeptide
                     binding]"
                     /db_xref="CDD:239036"
     Site            order(175,222)
                     /site_type="other"
                     /note="substrate binding [chemical binding]"
                     /db_xref="CDD:239036"
     Site            order(237..238,240,242)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239036"
     Region          <319..560
                     /region_name="M28_PSMA_like"
                     /note="M28 Zn-peptidase prostate-specific membrane
                     antigen; cd08022"
                     /db_xref="CDD:349942"
     Site            order(333..334,336,380,401..402,409)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:349942"
     Site            order(342,352,389..390,392..393,418..419,421..422,
                     483..484,501,514,517..518)
                     /site_type="active"
                     /db_xref="CDD:349942"
     Region          592..712
                     /region_name="TFR_dimer"
                     /note="Transferrin receptor-like dimerization domain;
                     pfam04253"
                     /db_xref="CDD:461238"
     CDS             1..715
                     /gene="LOC104064197"
                     /coded_by="XM_054056921.1:186..2333"
                     /db_xref="GeneID:104064197"
ORIGIN      
        1 mpfgwfakpt ekktsvsphe nvkaafmaem kaenikqflh nftrlphlag tkenlhlaqq
       61 iqaewkefgl dhvqlvhydv llsypdatkp nyisiidehg neifntslse ppppgyeavr
      121 dvvppysafs aqgmpegelv yvnygrtedf fklerdmgin ctgkiviary gkifrgnkvk
      181 naelagakgv ilysdpadyc tsgvdpypng wnlpgggaqr gnvlnlngag dpltpgypak
      241 eytyrldkas gvglpkipvh pigyhdaevl lrnmggdapp hsswkgslnv synigpgfts
      301 nystrkvkmh ihsnnevrri ynvigtirgk lepdryvilg ghrdswvfgg idpqsgaavv
      361 heivrsfgkl krkgwrprrt vifaswdaee fgllgstewa eenakvlqar gvayinadss
      421 vegnytlrvd ctplmyglvy sltkeipspd egfegkslye swykknpsre hkevprinkl
      481 gsgndfevff qrlgiasgra rysknwnvek yssypvyhsv yetyeiverf ydptfknhlt
      541 vaqvrgglvf elassvvlpf dcrdyasavs nyahiiynls rnheeelaty svsfdalfsa
      601 vknftevaas fherleqidi nnliavrtln dqlmfleraf idplglpgrp fyrhvifaps
      661 shnkyagesf pgiydalfdi knkadkheaw eevkrqisia aftvqaaaet lkeva
//
LOCUS       XP_053912906             690 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate carboxypeptidase 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912906
VERSION     XP_053912906.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056931.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..690
                     /product="glutamate carboxypeptidase 2 isoform X3"
                     /calculated_mol_wt=76617
     Region          59..>116
                     /region_name="Zinc_peptidase_like"
                     /note="Zinc peptidases M18, M20, M28, and M42; cl14876"
                     /db_xref="CDD:472712"
     Region          121..347
                     /region_name="PA_GCPII_like"
                     /note="Protease-associated domain containing protein,
                     glutamate carboxypeptidase II (GCPII)-like. This group
                     contains various PA domain-containing proteins similar to
                     GCPII including, GCPIII (NAALADase2) and NAALADase L.
                     These proteins belong to the peptidase...; cd02121"
                     /db_xref="CDD:239036"
     Site            order(165,254..256,258,264..267,270)
                     /site_type="other"
                     /note="apical/protease domain interface [polypeptide
                     binding]"
                     /db_xref="CDD:239036"
     Site            order(211,258)
                     /site_type="other"
                     /note="substrate binding [chemical binding]"
                     /db_xref="CDD:239036"
     Site            order(273..274,276,278)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239036"
     Region          <355..535
                     /region_name="Zinc_peptidase_like"
                     /note="Zinc peptidases M18, M20, M28, and M42; cl14876"
                     /db_xref="CDD:472712"
     Region          567..687
                     /region_name="TFR_dimer"
                     /note="Transferrin receptor-like dimerization domain;
                     pfam04253"
                     /db_xref="CDD:461238"
     CDS             1..690
                     /gene="LOC104064197"
                     /coded_by="XM_054056931.1:71..2143"
                     /db_xref="GeneID:104064197"
ORIGIN      
        1 mwaplgalte psgpransgr cwaavlgaaa gllllgfllg wfakptekkt svsphenvka
       61 afmaemkaen ikqflhnftr lphlagtken lhlaqqiqae wkefgldhvq lvhydvllsy
      121 pdatkpnyis iidehgneif ntslsepppp gyeavrdvvp pysafsaqgm pegelvyvny
      181 grtedffkle rdmginctgk iviarygkif rgnkvknael agakgvilys dpadyctsgv
      241 dpypngwnlp gggaqrgnvl nlngagdplt pgypakeyty rldkasgvgl pkipvhpigy
      301 hdaevllrnm ggdapphssw kgslnvsyni gpgftsnyst rkvkmhihsn nevrriynvi
      361 gtirgklepd ryvilgghrd swvfggidpq sgaavvheiv rsfgklkrkg wrprrtvifa
      421 swdaeefgll gstewaeena kvlqargvay inadssvegn ytlrvdctpl myglvysltk
      481 envekyssyp vyhsvyetye iverfydptf knhltvaqvr gglvfelass vvlpfdcrdy
      541 asavsnyahi iynlsrnhee elatysvsfd alfsavknft evaasfherl eqidinnlia
      601 vrtlndqlmf lerafidplg lpgrpfyrhv ifapsshnky agesfpgiyd alfdiknkad
      661 kheaweevkr qisiaaftvq aaaetlkeva
//
LOCUS       XP_009564685             740 aa            linear   VRT 09-MAR-2023
DEFINITION  N-acetylated-alpha-linked acidic dipeptidase 2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009564685
VERSION     XP_009564685.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566390.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564685.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..740
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..740
                     /product="N-acetylated-alpha-linked acidic dipeptidase 2
                     isoform X1"
                     /calculated_mol_wt=83454
     Region          59..>104
                     /region_name="Zinc_peptidase_like"
                     /note="Zinc peptidases M18, M20, M28, and M42; cl14876"
                     /db_xref="CDD:472712"
     Region          110..336
                     /region_name="PA_GCPII_like"
                     /note="Protease-associated domain containing protein,
                     glutamate carboxypeptidase II (GCPII)-like. This group
                     contains various PA domain-containing proteins similar to
                     GCPII including, GCPIII (NAALADase2) and NAALADase L.
                     These proteins belong to the peptidase...; cd02121"
                     /db_xref="CDD:239036"
     Site            order(154,243..245,247,253..256,259)
                     /site_type="other"
                     /note="apical/protease domain interface [polypeptide
                     binding]"
                     /db_xref="CDD:239036"
     Site            order(200,247)
                     /site_type="other"
                     /note="substrate binding [chemical binding]"
                     /db_xref="CDD:239036"
     Site            order(262..263,265,267)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239036"
     Region          <344..585
                     /region_name="M28_PSMA_like"
                     /note="M28 Zn-peptidase prostate-specific membrane
                     antigen; cd08022"
                     /db_xref="CDD:349942"
     Site            order(358..359,361,405,426..427,434)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:349942"
     Site            order(367,377,414..415,417..418,443..444,446..447,
                     508..509,526,539,542..543)
                     /site_type="active"
                     /db_xref="CDD:349942"
     Region          617..737
                     /region_name="TFR_dimer"
                     /note="Transferrin receptor-like dimerization domain;
                     pfam04253"
                     /db_xref="CDD:461238"
     CDS             1..740
                     /gene="LOC104064097"
                     /coded_by="XM_009566390.2:71..2293"
                     /db_xref="GeneID:104064097"
ORIGIN      
        1 marskptlra wlgctgllaa fllgflagwf tkptekkpns snayqnlrek lvaemkaeni
       61 kqflrtftkl phlagteqnl llakriqgqw kefgldsael vhydvllsyp dekqpnyisl
      121 iddqgneifn tslfepppqg yenvtnilpp ynafsaqgvp eadlvyvnyg rtedffkler
      181 emeinctgkv viarygkifr gnkvrnamla gaqgiilysd padycapgvd vypdgwnlps
      241 rgaqrgnvln lngagdpltp gypakeytfr ykvnegvgip kipvhpigyh daevllramg
      301 graapdsswk gslnvsynig pgfvdnsstr kvrmhvhtnn kitriynvig ilrgavepdr
      361 yiilgghrds wvfggidptt gtavlqevvr sfgkmktegw rpkrtiifas wdaeefgllg
      421 stewaeenar vlqeravayi ntdssiegny tlrvdctpll yklvynltke ivspdegyen
      481 kslyeswlek dpatennsyp rinklgsgsd feayfqrlgi asgrvrytkn kkadkfsnyp
      541 vyhtvydtfe lvekfydptf kkqltiaqlr gklvyelads qvipfdcrdy gealkrysnr
      601 iyklaekhee qlktykvsfd plfsavvnfs kaaiafhrrl eqvdkkdpla vrimndqlml
      661 ierafidplg lpgrnfyrhv ifapsshnky agesfpgiyd amfdieskad qhgaweevkr
      721 qisiaaftvq aaagtlreva
//
LOCUS       XP_053912926             707 aa            linear   VRT 09-MAR-2023
DEFINITION  N-acetylated-alpha-linked acidic dipeptidase 2 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912926
VERSION     XP_053912926.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056951.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..707
                     /product="N-acetylated-alpha-linked acidic dipeptidase 2
                     isoform X2"
                     /calculated_mol_wt=80072
     Region          110..296
                     /region_name="PA_GCPII_like"
                     /note="Protease-associated domain containing protein,
                     glutamate carboxypeptidase II (GCPII)-like. This group
                     contains various PA domain-containing proteins similar to
                     GCPII including, GCPIII (NAALADase2) and NAALADase L.
                     These proteins belong to the peptidase...; cd02121"
                     /db_xref="CDD:239036"
     Site            order(154,243..245,247,253..256,259)
                     /site_type="other"
                     /note="apical/protease domain interface [polypeptide
                     binding]"
                     /db_xref="CDD:239036"
     Site            order(200,247)
                     /site_type="other"
                     /note="substrate binding [chemical binding]"
                     /db_xref="CDD:239036"
     Site            order(262..263,265,267)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239036"
     Region          <311..552
                     /region_name="M28_PSMA_like"
                     /note="M28 Zn-peptidase prostate-specific membrane
                     antigen; cd08022"
                     /db_xref="CDD:349942"
     Site            order(325..326,328,372,393..394,401)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:349942"
     Site            order(334,344,381..382,384..385,410..411,413..414,
                     475..476,493,506,509..510)
                     /site_type="active"
                     /db_xref="CDD:349942"
     Region          584..704
                     /region_name="TFR_dimer"
                     /note="Transferrin receptor-like dimerization domain;
                     pfam04253"
                     /db_xref="CDD:461238"
     CDS             1..707
                     /gene="LOC104064097"
                     /coded_by="XM_054056951.1:71..2194"
                     /db_xref="GeneID:104064097"
ORIGIN      
        1 marskptlra wlgctgllaa fllgflagwf tkptekkpns snayqnlrek lvaemkaeni
       61 kqflrtftkl phlagteqnl llakriqgqw kefgldsael vhydvllsyp dekqpnyisl
      121 iddqgneifn tslfepppqg yenvtnilpp ynafsaqgvp eadlvyvnyg rtedffkler
      181 emeinctgkv viarygkifr gnkvrnamla gaqgiilysd padycapgvd vypdgwnlps
      241 rgaqrgnvln lngagdpltp gypakeytfr ykvnegvgip kipvhpigyh daevllrkvr
      301 mhvhtnnkit riynvigilr gavepdryii lgghrdswvf ggidpttgta vlqevvrsfg
      361 kmktegwrpk rtiifaswda eefgllgste waeenarvlq eravayintd ssiegnytlr
      421 vdctpllykl vynltkeivs pdegyenksl yeswlekdpa tennsyprin klgsgsdfea
      481 yfqrlgiasg rvrytknkka dkfsnypvyh tvydtfelve kfydptfkkq ltiaqlrgkl
      541 vyeladsqvi pfdcrdygea lkrysnriyk laekheeqlk tykvsfdplf savvnfskaa
      601 iafhrrleqv dkkdplavri mndqlmlier afidplglpg rnfyrhvifa psshnkyage
      661 sfpgiydamf dieskadqhg aweevkrqis iaaftvqaaa gtlreva
//
LOCUS       XP_053912935             683 aa            linear   VRT 09-MAR-2023
DEFINITION  N-acetylated-alpha-linked acidic dipeptidase 2 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053912935
VERSION     XP_053912935.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056960.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..683
                     /product="N-acetylated-alpha-linked acidic dipeptidase 2
                     isoform X3"
                     /calculated_mol_wt=77031
     Region          10..>47
                     /region_name="Zinc_peptidase_like"
                     /note="Zinc peptidases M18, M20, M28, and M42; cl14876"
                     /db_xref="CDD:472712"
     Region          53..279
                     /region_name="PA_GCPII_like"
                     /note="Protease-associated domain containing protein,
                     glutamate carboxypeptidase II (GCPII)-like. This group
                     contains various PA domain-containing proteins similar to
                     GCPII including, GCPIII (NAALADase2) and NAALADase L.
                     These proteins belong to the peptidase...; cd02121"
                     /db_xref="CDD:239036"
     Site            order(97,186..188,190,196..199,202)
                     /site_type="other"
                     /note="apical/protease domain interface [polypeptide
                     binding]"
                     /db_xref="CDD:239036"
     Site            order(143,190)
                     /site_type="other"
                     /note="substrate binding [chemical binding]"
                     /db_xref="CDD:239036"
     Site            order(205..206,208,210)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239036"
     Region          <287..528
                     /region_name="M28_PSMA_like"
                     /note="M28 Zn-peptidase prostate-specific membrane
                     antigen; cd08022"
                     /db_xref="CDD:349942"
     Site            order(301..302,304,348,369..370,377)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:349942"
     Site            order(310,320,357..358,360..361,386..387,389..390,
                     451..452,469,482,485..486)
                     /site_type="active"
                     /db_xref="CDD:349942"
     Region          560..680
                     /region_name="TFR_dimer"
                     /note="Transferrin receptor-like dimerization domain;
                     pfam04253"
                     /db_xref="CDD:461238"
     CDS             1..683
                     /gene="LOC104064097"
                     /coded_by="XM_054056960.1:96..2147"
                     /db_xref="GeneID:104064097"
ORIGIN      
        1 mhltmltstf tklphlagte qnlllakriq gqwkefglds aelvhydvll sypdekqpny
       61 isliddqgne ifntslfepp pqgyenvtni lppynafsaq gvpeadlvyv nygrtedffk
      121 leremeinct gkvviarygk ifrgnkvrna mlagaqgiil ysdpadycap gvdvypdgwn
      181 lpsrgaqrgn vlnlngagdp ltpgypakey tfrykvnegv gipkipvhpi gyhdaevllr
      241 amggraapds swkgslnvsy nigpgfvdns strkvrmhvh tnnkitriyn vigilrgave
      301 pdryiilggh rdswvfggid pttgtavlqe vvrsfgkmkt egwrpkrtii faswdaeefg
      361 llgstewaee narvlqerav ayintdssie gnytlrvdct pllyklvynl tkeivspdeg
      421 yenkslyesw lekdpatenn syprinklgs gsdfeayfqr lgiasgrvry tknkkadkfs
      481 nypvyhtvyd tfelvekfyd ptfkkqltia qlrgklvyel adsqvipfdc rdygealkry
      541 snriyklaek heeqlktykv sfdplfsavv nfskaaiafh rrleqvdkkd plavrimndq
      601 lmlierafid plglpgrnfy rhvifapssh nkyagesfpg iydamfdies kadqhgawee
      661 vkrqisiaaf tvqaaagtlr eva
//
LOCUS       XP_053912946             442 aa            linear   VRT 09-MAR-2023
DEFINITION  N-acetylated-alpha-linked acidic dipeptidase 2 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053912946
VERSION     XP_053912946.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056971.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..442
                     /product="N-acetylated-alpha-linked acidic dipeptidase 2
                     isoform X4"
                     /calculated_mol_wt=50195
     Region          <46..287
                     /region_name="M28_PSMA_like"
                     /note="M28 Zn-peptidase prostate-specific membrane
                     antigen; cd08022"
                     /db_xref="CDD:349942"
     Site            order(60..61,63,107,128..129,136)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:349942"
     Site            order(69,79,116..117,119..120,145..146,148..149,210..211,
                     228,241,244..245)
                     /site_type="active"
                     /db_xref="CDD:349942"
     Region          319..439
                     /region_name="TFR_dimer"
                     /note="Transferrin receptor-like dimerization domain;
                     pfam04253"
                     /db_xref="CDD:461238"
     CDS             1..442
                     /gene="LOC104064097"
                     /coded_by="XM_054056971.1:121..1449"
                     /db_xref="GeneID:104064097"
ORIGIN      
        1 mggraapdss wkgslnvsyn igpgfvdnss trkvrmhvht nnkitriynv igilrgavep
       61 dryiilgghr dswvfggidp ttgtavlqev vrsfgkmkte gwrpkrtiif aswdaeefgl
      121 lgstewaeen arvlqerava yintdssieg nytlrvdctp llyklvynlt keivspdegy
      181 enkslyeswl ekdpatenns yprinklgsg sdfeayfqrl giasgrvryt knkkadkfsn
      241 ypvyhtvydt felvekfydp tfkkqltiaq lrgklvyela dsqvipfdcr dygealkrys
      301 nriyklaekh eeqlktykvs fdplfsavvn fskaaiafhr rleqvdkkdp lavrimndql
      361 mlierafidp lglpgrnfyr hvifapsshn kyagesfpgi ydamfdiesk adqhgaweev
      421 krqisiaaft vqaaagtlre va
//
LOCUS       XP_009554944             623 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM234B [Cuculus canorus].
ACCESSION   XP_009554944
VERSION     XP_009554944.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556649.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554944.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..623
                     /product="protein FAM234B"
                     /calculated_mol_wt=67773
     CDS             1..623
                     /gene="FAM234B"
                     /coded_by="XM_009556649.2:91..1962"
                     /db_xref="GeneID:104055520"
ORIGIN      
        1 matvlsralk lpgkkspdlg eydpltqads deseddlvln iqknggvkng ksppdevqdp
       61 dsdvevgmtk qhtsestpeg ypaetagsle qkaapslmpy lrtviflltv vismilvlvc
      121 aflipcpprd lhntwnrnlg qgaggvlspl elcdvngdgl pdilvvftal mnasvigvsr
      181 psitvvalsg mngstlwsiq lpeetrsiqc kglslevpae pvclvtgtsk flsllsastg
      241 ktiwtlnsih lsngmlaapa atlpdvdgdg irdivvlalt dsepdmffil vsgrtgtalg
      301 gpvkystnge gkvigpqvhi tsrgaiyilf gfgnvqaval rdiftqarnr dsfpemlqqe
      361 epewekrrsv nlselidiyn ggvdflqimk apdtncsnll ittkdglill rgqdleprwt
      421 lelqnissqp vpgyfgadqt ldfmlqaqtg dgnkkvvvid gksglpvwnq elpwqkqqld
      481 alsvmtvdkk svflfwadea qpvlqslqpd prlerprlhh lyllhpvfpt vlldltnatd
      541 kviasaigin dlqkdafhit vtttatsenq pgflsvsklg lkwammsqgr mvwlkdatap
      601 kisrgevrry larlkfvdfp qkl
//
LOCUS       XP_053912972             347 aa            linear   VRT 09-MAR-2023
DEFINITION  germ cell-specific gene 1 protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053912972
VERSION     XP_053912972.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056997.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..347
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..347
                     /product="germ cell-specific gene 1 protein isoform X1"
                     /calculated_mol_wt=38873
     Region          40..154
                     /region_name="GSG-1"
                     /note="GSG1-like protein; pfam07803"
                     /db_xref="CDD:462270"
     CDS             1..347
                     /gene="GSG1"
                     /coded_by="XM_054056997.1:539..1582"
                     /db_xref="GeneID:104055521"
ORIGIN      
        1 mknlgvplet cqkslqaqit qregpasrit dkmellkglp whrgflavil nllaltlstt
       61 allvsywctg tqkvpkplcg kskdtkcigv pmphdagasn vssqdvvhys wetgddrfaf
      121 ryfhtgmwls ceesmegpee kcrsfielsp paergilwls lgsemlyisl llisfillmv
      181 emlytgnpvc glklnafaav ssvlsgllgm vahmmytqvf qatvnlgped wrphswdygw
      241 afymawasft ccmasavttl ntytktvlef krnhikgydg sfkdqpqhhq cfvqqqissy
      301 ydpqgkpvhs vseavefysk lqqkvlqqep eleldevlgq tigedhc
//
LOCUS       XP_053912983             347 aa            linear   VRT 09-MAR-2023
DEFINITION  germ cell-specific gene 1 protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053912983
VERSION     XP_053912983.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057008.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..347
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..347
                     /product="germ cell-specific gene 1 protein isoform X1"
                     /calculated_mol_wt=38873
     Region          40..154
                     /region_name="GSG-1"
                     /note="GSG1-like protein; pfam07803"
                     /db_xref="CDD:462270"
     CDS             1..347
                     /gene="GSG1"
                     /coded_by="XM_054057008.1:419..1462"
                     /db_xref="GeneID:104055521"
ORIGIN      
        1 mknlgvplet cqkslqaqit qregpasrit dkmellkglp whrgflavil nllaltlstt
       61 allvsywctg tqkvpkplcg kskdtkcigv pmphdagasn vssqdvvhys wetgddrfaf
      121 ryfhtgmwls ceesmegpee kcrsfielsp paergilwls lgsemlyisl llisfillmv
      181 emlytgnpvc glklnafaav ssvlsgllgm vahmmytqvf qatvnlgped wrphswdygw
      241 afymawasft ccmasavttl ntytktvlef krnhikgydg sfkdqpqhhq cfvqqqissy
      301 ydpqgkpvhs vseavefysk lqqkvlqqep eleldevlgq tigedhc
//
LOCUS       XP_053912994             347 aa            linear   VRT 09-MAR-2023
DEFINITION  germ cell-specific gene 1 protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053912994
VERSION     XP_053912994.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057019.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..347
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..347
                     /product="germ cell-specific gene 1 protein isoform X1"
                     /calculated_mol_wt=38873
     Region          40..154
                     /region_name="GSG-1"
                     /note="GSG1-like protein; pfam07803"
                     /db_xref="CDD:462270"
     CDS             1..347
                     /gene="GSG1"
                     /coded_by="XM_054057019.1:500..1543"
                     /db_xref="GeneID:104055521"
ORIGIN      
        1 mknlgvplet cqkslqaqit qregpasrit dkmellkglp whrgflavil nllaltlstt
       61 allvsywctg tqkvpkplcg kskdtkcigv pmphdagasn vssqdvvhys wetgddrfaf
      121 ryfhtgmwls ceesmegpee kcrsfielsp paergilwls lgsemlyisl llisfillmv
      181 emlytgnpvc glklnafaav ssvlsgllgm vahmmytqvf qatvnlgped wrphswdygw
      241 afymawasft ccmasavttl ntytktvlef krnhikgydg sfkdqpqhhq cfvqqqissy
      301 ydpqgkpvhs vseavefysk lqqkvlqqep eleldevlgq tigedhc
//
LOCUS       XP_053913002             347 aa            linear   VRT 09-MAR-2023
DEFINITION  germ cell-specific gene 1 protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053913002
VERSION     XP_053913002.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057027.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..347
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..347
                     /product="germ cell-specific gene 1 protein isoform X1"
                     /calculated_mol_wt=38873
     Region          40..154
                     /region_name="GSG-1"
                     /note="GSG1-like protein; pfam07803"
                     /db_xref="CDD:462270"
     CDS             1..347
                     /gene="GSG1"
                     /coded_by="XM_054057027.1:283..1326"
                     /db_xref="GeneID:104055521"
ORIGIN      
        1 mknlgvplet cqkslqaqit qregpasrit dkmellkglp whrgflavil nllaltlstt
       61 allvsywctg tqkvpkplcg kskdtkcigv pmphdagasn vssqdvvhys wetgddrfaf
      121 ryfhtgmwls ceesmegpee kcrsfielsp paergilwls lgsemlyisl llisfillmv
      181 emlytgnpvc glklnafaav ssvlsgllgm vahmmytqvf qatvnlgped wrphswdygw
      241 afymawasft ccmasavttl ntytktvlef krnhikgydg sfkdqpqhhq cfvqqqissy
      301 ydpqgkpvhs vseavefysk lqqkvlqqep eleldevlgq tigedhc
//
LOCUS       XP_053913010             347 aa            linear   VRT 09-MAR-2023
DEFINITION  germ cell-specific gene 1 protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053913010
VERSION     XP_053913010.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057035.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..347
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..347
                     /product="germ cell-specific gene 1 protein isoform X1"
                     /calculated_mol_wt=38873
     Region          40..154
                     /region_name="GSG-1"
                     /note="GSG1-like protein; pfam07803"
                     /db_xref="CDD:462270"
     CDS             1..347
                     /gene="GSG1"
                     /coded_by="XM_054057035.1:294..1337"
                     /db_xref="GeneID:104055521"
ORIGIN      
        1 mknlgvplet cqkslqaqit qregpasrit dkmellkglp whrgflavil nllaltlstt
       61 allvsywctg tqkvpkplcg kskdtkcigv pmphdagasn vssqdvvhys wetgddrfaf
      121 ryfhtgmwls ceesmegpee kcrsfielsp paergilwls lgsemlyisl llisfillmv
      181 emlytgnpvc glklnafaav ssvlsgllgm vahmmytqvf qatvnlgped wrphswdygw
      241 afymawasft ccmasavttl ntytktvlef krnhikgydg sfkdqpqhhq cfvqqqissy
      301 ydpqgkpvhs vseavefysk lqqkvlqqep eleldevlgq tigedhc
//
LOCUS       XP_053913015             347 aa            linear   VRT 09-MAR-2023
DEFINITION  germ cell-specific gene 1 protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053913015
VERSION     XP_053913015.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057040.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..347
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..347
                     /product="germ cell-specific gene 1 protein isoform X1"
                     /calculated_mol_wt=38873
     Region          40..154
                     /region_name="GSG-1"
                     /note="GSG1-like protein; pfam07803"
                     /db_xref="CDD:462270"
     CDS             1..347
                     /gene="GSG1"
                     /coded_by="XM_054057040.1:443..1486"
                     /db_xref="GeneID:104055521"
ORIGIN      
        1 mknlgvplet cqkslqaqit qregpasrit dkmellkglp whrgflavil nllaltlstt
       61 allvsywctg tqkvpkplcg kskdtkcigv pmphdagasn vssqdvvhys wetgddrfaf
      121 ryfhtgmwls ceesmegpee kcrsfielsp paergilwls lgsemlyisl llisfillmv
      181 emlytgnpvc glklnafaav ssvlsgllgm vahmmytqvf qatvnlgped wrphswdygw
      241 afymawasft ccmasavttl ntytktvlef krnhikgydg sfkdqpqhhq cfvqqqissy
      301 ydpqgkpvhs vseavefysk lqqkvlqqep eleldevlgq tigedhc
//
LOCUS       XP_053913021             347 aa            linear   VRT 09-MAR-2023
DEFINITION  germ cell-specific gene 1 protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053913021
VERSION     XP_053913021.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057046.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..347
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..347
                     /product="germ cell-specific gene 1 protein isoform X1"
                     /calculated_mol_wt=38873
     Region          40..154
                     /region_name="GSG-1"
                     /note="GSG1-like protein; pfam07803"
                     /db_xref="CDD:462270"
     CDS             1..347
                     /gene="GSG1"
                     /coded_by="XM_054057046.1:267..1310"
                     /db_xref="GeneID:104055521"
ORIGIN      
        1 mknlgvplet cqkslqaqit qregpasrit dkmellkglp whrgflavil nllaltlstt
       61 allvsywctg tqkvpkplcg kskdtkcigv pmphdagasn vssqdvvhys wetgddrfaf
      121 ryfhtgmwls ceesmegpee kcrsfielsp paergilwls lgsemlyisl llisfillmv
      181 emlytgnpvc glklnafaav ssvlsgllgm vahmmytqvf qatvnlgped wrphswdygw
      241 afymawasft ccmasavttl ntytktvlef krnhikgydg sfkdqpqhhq cfvqqqissy
      301 ydpqgkpvhs vseavefysk lqqkvlqqep eleldevlgq tigedhc
//
LOCUS       XP_053913029             347 aa            linear   VRT 09-MAR-2023
DEFINITION  germ cell-specific gene 1 protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053913029
VERSION     XP_053913029.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057054.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..347
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..347
                     /product="germ cell-specific gene 1 protein isoform X1"
                     /calculated_mol_wt=38873
     Region          40..154
                     /region_name="GSG-1"
                     /note="GSG1-like protein; pfam07803"
                     /db_xref="CDD:462270"
     CDS             1..347
                     /gene="GSG1"
                     /coded_by="XM_054057054.1:265..1308"
                     /db_xref="GeneID:104055521"
ORIGIN      
        1 mknlgvplet cqkslqaqit qregpasrit dkmellkglp whrgflavil nllaltlstt
       61 allvsywctg tqkvpkplcg kskdtkcigv pmphdagasn vssqdvvhys wetgddrfaf
      121 ryfhtgmwls ceesmegpee kcrsfielsp paergilwls lgsemlyisl llisfillmv
      181 emlytgnpvc glklnafaav ssvlsgllgm vahmmytqvf qatvnlgped wrphswdygw
      241 afymawasft ccmasavttl ntytktvlef krnhikgydg sfkdqpqhhq cfvqqqissy
      301 ydpqgkpvhs vseavefysk lqqkvlqqep eleldevlgq tigedhc
//
LOCUS       XP_053913031             315 aa            linear   VRT 09-MAR-2023
DEFINITION  germ cell-specific gene 1 protein isoform X2 [Cuculus canorus].
ACCESSION   XP_053913031
VERSION     XP_053913031.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057056.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..315
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..315
                     /product="germ cell-specific gene 1 protein isoform X2"
                     /calculated_mol_wt=35349
     Region          8..122
                     /region_name="GSG-1"
                     /note="GSG1-like protein; pfam07803"
                     /db_xref="CDD:462270"
     CDS             1..315
                     /gene="GSG1"
                     /coded_by="XM_054057056.1:188..1135"
                     /db_xref="GeneID:104055521"
ORIGIN      
        1 mellkglpwh rgflavilnl laltlsttal lvsywctgtq kvpkplcgks kdtkcigvpm
       61 phdagasnvs sqdvvhyswe tgddrfafry fhtgmwlsce esmegpeekc rsfielsppa
      121 ergilwlslg semlyislll isfillmvem lytgnpvcgl klnafaavss vlsgllgmva
      181 hmmytqvfqa tvnlgpedwr phswdygwaf ymawasftcc masavttlnt ytktvlefkr
      241 nhikgydgsf kdqpqhhqcf vqqqissyyd pqgkpvhsvs eavefysklq qkvlqqepel
      301 eldevlgqti gedhc
//
LOCUS       XP_009554886             161 aa            linear   VRT 09-MAR-2023
DEFINITION  epithelial membrane protein 1 [Cuculus canorus].
ACCESSION   XP_009554886
VERSION     XP_009554886.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556591.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..161
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..161
                     /product="epithelial membrane protein 1"
                     /calculated_mol_wt=17949
     Region          1..155
                     /region_name="PMP22_Claudin"
                     /note="PMP-22/EMP/MP20/Claudin family; cl21598"
                     /db_xref="CDD:473919"
     CDS             1..161
                     /gene="EMP1"
                     /coded_by="XM_009556591.2:213..698"
                     /db_xref="GeneID:104055469"
ORIGIN      
        1 mlvllagifv vhiatvimlf vctisnvwmv gtsnlervss glwllcnrtc eqlpvssdne
       61 aslkavqafm ilsiifsvia lvmfivqlft lekgkrfyit ggimlvcwvc iligvsiyta
      121 rftgqmpaft nthhgycfil awicfcfsfi tgilylvlrk k
//
LOCUS       XP_053913034             536 aa            linear   VRT 09-MAR-2023
DEFINITION  cyclin-dependent kinase 17 isoform X1 [Cuculus canorus].
ACCESSION   XP_053913034
VERSION     XP_053913034.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057059.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..536
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..536
                     /product="cyclin-dependent kinase 17 isoform X1"
                     /calculated_mol_wt=60848
     Region          198..506
                     /region_name="STKc_PCTAIRE2"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     PCTAIRE-2 kinase; cd07872"
                     /db_xref="CDD:143377"
     Site            order(211..214,219,232,234,250,264,280..283,286,288..289,
                     326,328,330..331,333,344,347,359,361..364,366,404..405)
                     /site_type="active"
                     /db_xref="CDD:143377"
     Site            order(211..214,219,232,234,264,280..283,286,289,330..331,
                     333,344)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:143377"
     Site            order(242..244,246,249..250,252..253,256..257,269,271,276,
                     315,318..321,349,351..354,358..359,472,476..478)
                     /site_type="other"
                     /note="putative CDK/cyclin interface [polypeptide
                     binding]"
                     /db_xref="CDD:143377"
     Site            order(250,288,326,328,347,359,361..364,366,404..405)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:143377"
     Site            343..366
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:143377"
     CDS             1..536
                     /gene="CDK17"
                     /coded_by="XM_054057059.1:318..1928"
                     /db_xref="GeneID:104055175"
ORIGIN      
        1 mkkfkrrlsl tlrgsqtide slselaeqmt ieensskdng vsnngrisys kvqpivkngr
       61 pptshsmhsf lhqytgsfkk pplrrphsvi ggslgsfmam prngsrldiv henlkmgsdg
      121 esdqasgtss devqsptgvc lrnrihrris medlnkrlsl padiripdgy leklqinspp
      181 fdqpmsrrsr raslseigfg kmetyiklek lgegtyatvy kgrskltenl valkeirleh
      241 eegapctair evsllkdlkh anivtlhdiv htdksltlvf eyldkdlkqy mddcgnimsm
      301 hnvklflyqi lrglaychrr kvlhrdlkpq nllinekgel kladfglara ksvptktysn
      361 evvtlwyrpp dvllgsseys tqidmwgvgc iffemasgrp lfpgstvede lhlifrllgt
      421 pcqetwpgis ssdefrnynf pkykpqplin haprldtegi elivkflqye skkrisaeea
      481 mkhayfrslg trvhtlpesv sifslkeiql qkdpgfrnst ypetghgknr rqsmlf
//
LOCUS       XP_053913035             523 aa            linear   VRT 09-MAR-2023
DEFINITION  cyclin-dependent kinase 17 isoform X2 [Cuculus canorus].
ACCESSION   XP_053913035
VERSION     XP_053913035.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057060.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..523
                     /product="cyclin-dependent kinase 17 isoform X2"
                     /calculated_mol_wt=59486
     Region          185..493
                     /region_name="STKc_PCTAIRE2"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     PCTAIRE-2 kinase; cd07872"
                     /db_xref="CDD:143377"
     Site            order(198..201,206,219,221,237,251,267..270,273,275..276,
                     313,315,317..318,320,331,334,346,348..351,353,391..392)
                     /site_type="active"
                     /db_xref="CDD:143377"
     Site            order(198..201,206,219,221,251,267..270,273,276,317..318,
                     320,331)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:143377"
     Site            order(229..231,233,236..237,239..240,243..244,256,258,263,
                     302,305..308,336,338..341,345..346,459,463..465)
                     /site_type="other"
                     /note="putative CDK/cyclin interface [polypeptide
                     binding]"
                     /db_xref="CDD:143377"
     Site            order(237,275,313,315,334,346,348..351,353,391..392)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:143377"
     Site            330..353
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:143377"
     CDS             1..523
                     /gene="CDK17"
                     /coded_by="XM_054057060.1:316..1887"
                     /db_xref="GeneID:104055175"
ORIGIN      
        1 mkkfkrrlsl tlrgsqtide slselaeqmt ieensskdne pivkngrppt shsmhsflhq
       61 ytgsfkkppl rrphsviggs lgsfmamprn gsrldivhen lkmgsdgesd qasgtssdev
      121 qsptgvclrn rihrrismed lnkrlslpad iripdgylek lqinsppfdq pmsrrsrras
      181 lseigfgkme tyikleklge gtyatvykgr skltenlval keirleheeg apctairevs
      241 llkdlkhani vtlhdivhtd ksltlvfeyl dkdlkqymdd cgnimsmhnv klflyqilrg
      301 laychrrkvl hrdlkpqnll inekgelkla dfglaraksv ptktysnevv tlwyrppdvl
      361 lgsseystqi dmwgvgciff emasgrplfp gstvedelhl ifrllgtpcq etwpgisssd
      421 efrnynfpky kpqplinhap rldtegieli vkflqyeskk risaeeamkh ayfrslgtrv
      481 htlpesvsif slkeiqlqkd pgfrnstype tghgknrrqs mlf
//
LOCUS       XP_053913036             407 aa            linear   VRT 09-MAR-2023
DEFINITION  ETS domain-containing protein Elk-3 [Cuculus canorus].
ACCESSION   XP_053913036
VERSION     XP_053913036.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057061.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..407
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..407
                     /product="ETS domain-containing protein Elk-3"
                     /calculated_mol_wt=44438
     Region          19..88
                     /region_name="ETS"
                     /note="erythroblast transformation specific domain;
                     smart00413"
                     /db_xref="CDD:197710"
     CDS             1..407
                     /gene="ELK3"
                     /coded_by="XM_054057061.1:422..1645"
                     /db_xref="GeneID:104055174"
ORIGIN      
        1 mesaitlwqf llqllldqkh ehlicwtsnd gefkllkaee vaklwglrkn ktnmnydkls
       61 ralryyydkn iikkvigqkf vykfvsfpei lkmdphavei sreslllqds dckmpsesrd
      121 qhkhslsalk stsrneyihs glyssftins lqnqpdpykp iktekleeks evntpveevr
      181 tvirfvtnkr dkqvmrpmvs lpstsetaaa saflsssvsa kisslmlsns asisspssss
      241 srspslspts plpaehrslf lesschdsds leplnlssgs kakspslppk akkpkgleis
      301 appmvlsstd igsialnspa lpsgsltpaf ftaqtpngll ltpspllssi hfwsslspva
      361 plsparlqgp nslfqfptll nghipvplps ldgasspvll spnaqks
//
LOCUS       XP_053913038            2709 aa            linear   VRT 09-MAR-2023
DEFINITION  protein TASOR 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053913038
VERSION     XP_053913038.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057063.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2709
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2709
                     /product="protein TASOR 2 isoform X1"
                     /calculated_mol_wt=295876
     Region          68..209
                     /region_name="DUF3715"
                     /note="Protein of unknown function (DUF3715); pfam12509"
                     /db_xref="CDD:463613"
     Region          825..971
                     /region_name="DUF3715"
                     /note="Protein of unknown function (DUF3715); pfam12509"
                     /db_xref="CDD:463613"
     Region          1097..>1509
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     CDS             1..2709
                     /gene="TASOR2"
                     /coded_by="XM_054057063.1:158..8287"
                     /db_xref="GeneID:104061441"
ORIGIN      
        1 mgershrgfh leseesssll qtavsvlqrs yldsasqdsf qysqavlven dvflselkaf
       61 aqakeaagys qeeleetfaf llfdneeevk evcqaglrvn sssismlgdp akgvyiskya
      121 dclhlspwyh gksgyivick likgkvrvvs enyttsytcp spgydchvav sgdnipskts
      181 hcqafeqsqy yvyevsdgst verprqicpy iviacrykep kempllaven lpeldhkaly
      241 cpwrgqlsir gqllcdialr tpysstipaq lppnldinhv mglsdlkkkl peaafgkrny
      301 ienevcfqgv yfslyeveis kkdqykmdql vknlkekdla iikylqdrgv lilltssala
      361 rddgfdskep vgllalflfs ssrsvclraa ekhdpkdgre egdislkias vlpglryalq
      421 katssswdda istsnrikqh fqeytklgqc pqpisdqtne dplsallspm edkgpnptqk
      481 cseqtfsqlq cylsnpssyt levsaalecl tgavqslccd sevdqkvdis palppdpfpp
      541 ntaaeievks enqkstmrpd qieeeatkdi natsklwvqp srrkssqavv tstrrmwspl
      601 kmqmhpvgds grnrkatkkk kiniafpfpk kptlmassne pmlklahlqf phrrkrgaev
      661 lsaefvhrtq sepvkketsa pndpgvetkr pktpkdpeve kvpltetvpk pvesktlrnv
      721 anspskpqdk kqieseqkep ssvlpskvss qrrgaesqms eiypsgvadl csdlkgnnye
      781 shalnlladl algscipsfm prdsgmipvc fspssdstke pqhhhkdkyl hvasdheyhr
      841 vdklakgats pskaspdqkl ppaektdlnd lasapretss gmfsrknnvs pspakphvlp
      901 pretqeatdv nkhsiisveh syasqmpehs krhtyprgap ypapatsrng trnaqagplv
      961 gkvlpfcrqq nsphhqrlle amamrrrrsl lfprlkedfa kshtvnvcgk svkvtchwda
     1021 eylfsldsry tkdalektvi ralhgpwdpd mpddveemkl ilhmwvalfy skpskflsst
     1081 rkvvehsnpe kyvsinssgd ilelsddged cfgletcpad srsdpdqips ssldrsthcq
     1141 gsfhpekspa dsqtdadgsp gvvdstvsss sgelpngeee psstscpesi sltehadesl
     1201 vvkdrqpavv pedrvqdvst itaedspkeg lldattnssp fgelgdvskp paapgmenpc
     1261 rqapnsstap wnaalrgcge qqesgwaaaa rngpgppddk enmrdaghct eieegsratr
     1321 dgpqhacesm pleahlkstk pgeasgeere sqdpfrhpek eegeveevkk ekedseyesp
     1381 gleavdlafs essdanmehe hseqepvnsa cpkdfgipge gpvpspaalv spspdrstpv
     1441 qpdgtetgpq rlpdemaprp dtlqepckal atpnaetngp glahtgrpad vgspcgsgsa
     1501 lplssdpslv ceaqrdsitd nvgpagetlr dnleqtykeg dgleqknner apsaerwata
     1561 gskatntagl espsltlspd snsvcrtsld gatdpaaape dqeamasiqs psqselggss
     1621 clpqrcggnv cadlnllsag esnqggkkvs veeqcgspsa sctdvldesc gagngqgftf
     1681 dctvlagase agesddvcls aeksprtdka dtvvitnaaq epdtslhhll esepsslvne
     1741 gmsavkehpk qhqsspnews ppacagsaps spreqdflpc grdadthhll leqseqgpvl
     1801 hehgepcesv gaeevslaae tpdgslkpkc aeevkkdtap chakqaessp vdvlvpgdlg
     1861 smppsplrgh kaglcstepd sglgvhtetl spgvslapdg sphsccmehe qvesspvdvl
     1921 vsgdlgsmpp splhghkagl cstepdsglh vhtetlspgm spapdgsphs ccmdttcpgs
     1981 aspggqvvdv vgsheeepil ledlesgssv plaspasfsp eqslvplykp qswheaevsd
     2041 tfpelhrasm evgegksptl pflmvpfrvh ggfsgessel sdaedasdml praeqlpskd
     2101 rhmgltfedq fqsfsgdsde eyfgrtsqsr gsystrsmdt adartncass tssehtegcs
     2161 eewcslgter gwtraehhwp iglgrtssgh ippyvnfrds qgftkdyqni mvtktfqerm
     2221 gkpqplkrhs hcagrshllr slrgtwrgfe eltqhtldme ylrfhyklkq ilrsgkppfs
     2281 tsksifpkdf spqvmsealp greapislsa rsrsplqvti lpsdawqsrl swrqpsslhe
     2341 dlcppwqdtl cgersrarsq trsqghpfhl sklrydnklk dshgdigdil deyakfhrvm
     2401 lsrvdarseg kgpipvceea tskctcaslp grmgtfedti tdlcdtlhsh lhslakeact
     2461 htsmfylvet gkdpffsrvk tllkkdghve ieplsfceae qpdtnrllvv irnedisshi
     2521 yhvpcllklk hcpnvvfagv dspedimght yqelfhtggf vvsddellem vtlgqlrevv
     2581 kvleklnrsg kwkwllhyke skklrghssr vdanarkkdl ilkscqgadl ievlhyhtcd
     2641 sgsspkseyv rclldlqvqh isarfavylt ekpsssrevl eskgilvvdv naflgtvqkv
     2701 aapfrrsyw
//
LOCUS       XP_053913049            2708 aa            linear   VRT 09-MAR-2023
DEFINITION  protein TASOR 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053913049
VERSION     XP_053913049.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057074.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2708
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2708
                     /product="protein TASOR 2 isoform X2"
                     /calculated_mol_wt=295789
     Region          68..209
                     /region_name="DUF3715"
                     /note="Protein of unknown function (DUF3715); pfam12509"
                     /db_xref="CDD:463613"
     Region          825..971
                     /region_name="DUF3715"
                     /note="Protein of unknown function (DUF3715); pfam12509"
                     /db_xref="CDD:463613"
     Region          1097..>1509
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     CDS             1..2708
                     /gene="TASOR2"
                     /coded_by="XM_054057074.1:158..8284"
                     /db_xref="GeneID:104061441"
ORIGIN      
        1 mgershrgfh leseesssll qtavsvlqrs yldsasqdsf qysqavlven dvflselkaf
       61 aqakeaagys qeeleetfaf llfdneeevk evcqaglrvn sssismlgdp akgvyiskya
      121 dclhlspwyh gksgyivick likgkvrvvs enyttsytcp spgydchvav sgdnipskts
      181 hcqafeqsqy yvyevsdgst verprqicpy iviacrykep kempllaven lpeldhkaly
      241 cpwrgqlsir gqllcdialr tpysstipaq lppnldinhv mglsdlkkkl peaafgkrny
      301 ienevcfqgv yfslyeveis kkdqykmdql vknlkekdla iikylqdrgv lilltssala
      361 rddgfdskep vgllalflfs ssrsvclraa ekhdpkdgre egdislkias vlpglryalq
      421 katssswdda istsnrikqh fqeytklgqc pqpisdqtne dplsallspm edkgpnptqk
      481 cseqtfsqlq cylsnpssyt levsaalecl tgavqslccd sevdqkvdis palppdpfpp
      541 ntaaeievks enqkstmrpd qieeeatkdi natsklwvqp srrkssqavv tstrrmwspl
      601 kmqmhpvgds grnrkatkkk kiniafpfpk kptlmassne pmlklahlqf phrrkrgaev
      661 lsaefvhrtq sepvkketsa pndpgvetkr pktpkdpeve kvpltetvpk pvesktlrnv
      721 anspskpqdk kqieseqkep ssvlpskvss qrrgaesqms eiypsgvadl csdlkgnnye
      781 shalnlladl algscipsfm prdsgmipvc fspssdstke pqhhhkdkyl hvasdheyhr
      841 vdklakgats pskaspdqkl ppaektdlnd lasapretss gmfsrknnvs pspakphvlp
      901 pretqeatdv nkhsiisveh syasqmpehs krhtyprgap ypapatsrng trnaqagplv
      961 gkvlpfcrqq nsphhqrlle amamrrrrsl lfprlkedfa kshtvnvcgk svkvtchwda
     1021 eylfsldsry tkdalektvi ralhgpwdpd mpddveemkl ilhmwvalfy skpskflsst
     1081 rkvvehsnpe kyvsinssgd ilelsddged cfgletcpad srsdpdqips ssldrsthcq
     1141 gsfhpekspa dsqtdadgsp gvvdstvsss sgelpngeee psstscpesi sltehadesl
     1201 vvkdrqpavv pedrvqdvst itaedspkeg lldattnssp fgelgdvskp paapgmenpc
     1261 rqapnsstap wnaalrgcge qqesgwaaaa rngpgppddk enmrdaghct eieegsratr
     1321 dgpqhacesm pleahlkstk pgeasgeere sqdpfrhpek eegeveevkk ekedseyesp
     1381 gleavdlafs essdanmehe hseqepvnsa cpkdfgipge gpvpspaalv spspdrstpv
     1441 qpdgtetgpq rlpdemaprp dtlqepckal atpnaetngp glahtgrpad vgspcgsgsa
     1501 lplssdpslv ceaqrdsitd nvgpagetlr dnleqtykeg dgleqknner apsaerwata
     1561 gskatntagl espsltlspd snsvcrtsld gatdpaaape dqeamasiqs psqselggss
     1621 clpqrcggnv cadlnllsag esnqggkkvs veeqcgspsa sctdvldesc gagngqgftf
     1681 dctvlagase agesddvcls aeksprtdka dtvvitnaaq epdtslhhll esepsslvne
     1741 gmsavkehpk qhqsspnews ppacagsaps spreqdflpc grdadthhll leqseqgpvl
     1801 hehgepcesv gaeevslaae tpdgslkpkc aeevkkdtap chakqaessp vdvlvpgdlg
     1861 smppsplrgh kaglcstepd sglgvhtetl spgvslapdg sphsccmehe qvesspvdvl
     1921 vsgdlgsmpp splhghkagl cstepdsglh vhtetlspgm spapdgsphs ccmdttcpgs
     1981 aspggqvvdv vgsheeepil ledlesgssv plaspasfsp eqslvplykp qswheaevsd
     2041 tfpelhrasm evgegksptl pflmvpfrvh ggfsgessel sdaedasdml praeqlpskd
     2101 rhmgltfedq fqsfsgdsde eyfgrtsqsr gsystrsmdt adartncass tssehtegcs
     2161 eewcslgter gwtraehhwp iglgrtssgh ippyvnfrds qgftkdyqni mvtktfqerm
     2221 gkpqplkrhs hcagrshllr slrgtwrgfe eltqhtldme ylrfhyklkq ilrsgkppfs
     2281 tsksifpkdf spqvmsealp greapislsa rsrsplqvti lpsdawqsrl swrqpsslhe
     2341 dlcppwqdtl cgersrarsq trsqghpfhl sklrydnklk dshgdigdil deyakfhrvm
     2401 lsrvdarseg kgpipvceea tskctcaslp grmgtfedti tdlcdtlhsh lhslakeact
     2461 htsmfylvet gkdpffsrvk tllkkdghve ieplsfceae qpdtnrllvv irnedisshi
     2521 yhvpcllklk hcpnvvfagv dspedimght yqelfhtggf vvsddellem vtlgqlrevv
     2581 kvleklnrsg kwkwllhyke skklrghsrv danarkkdli lkscqgadli evlhyhtcds
     2641 gsspkseyvr clldlqvqhi sarfavylte kpsssrevle skgilvvdvn aflgtvqkva
     2701 apfrrsyw
//
LOCUS       XP_053913059            2708 aa            linear   VRT 09-MAR-2023
DEFINITION  protein TASOR 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053913059
VERSION     XP_053913059.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057084.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2708
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2708
                     /product="protein TASOR 2 isoform X3"
                     /calculated_mol_wt=295789
     Region          68..209
                     /region_name="DUF3715"
                     /note="Protein of unknown function (DUF3715); pfam12509"
                     /db_xref="CDD:463613"
     Region          825..971
                     /region_name="DUF3715"
                     /note="Protein of unknown function (DUF3715); pfam12509"
                     /db_xref="CDD:463613"
     Region          1097..>1509
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     CDS             1..2708
                     /gene="TASOR2"
                     /coded_by="XM_054057084.1:158..8284"
                     /db_xref="GeneID:104061441"
ORIGIN      
        1 mgershrgfh leseesssll qtavsvlqrs yldsasqdsf qysqavlven dvflselkaf
       61 aqakeaagys qeeleetfaf llfdneeevk evcqaglrvn sssismlgdp akgvyiskya
      121 dclhlspwyh gksgyivick likgkvrvvs enyttsytcp spgydchvav sgdnipskts
      181 hcqafeqsqy yvyevsdgst verprqicpy iviacrykep kempllaven lpeldhkaly
      241 cpwrgqlsir gqllcdialr tpysstipaq lppnldinhv mglsdlkkkl peaafgkrny
      301 ienevcfqgv yfslyeveis kkdqykmdql vknlkekdla iikylqdrgv lilltssala
      361 rddgfdskep vgllalflfs ssrsvclraa ekhdpkdgre egdislkias vlpglryalq
      421 katssswdda istsnrikqh fqeytklgqc pqpisdqtne dplsallspm edkgpnptqk
      481 cseqtfsqlq cylsnpssyt levsaalecl tgavqslccd sevdqkvdis palppdpfpp
      541 ntaaeievks enqkstmrpd qieeeatkdi natsklwvqp srrkssqavv tstrrmwspl
      601 kmqmhpvgds grnrkatkkk kiniafpfpk kptlmassne pmlklahlqf phrrkrgaev
      661 lsaefvhrtq sepvkketsa pndpgvetkr pktpkdpeve kvpltetvpk pvesktlrnv
      721 anspskpqdk kqieseqkep ssvlpskvss qrrgaesqms eiypsgvadl csdlkgnnye
      781 shalnlladl algscipsfm prdsgmipvc fspssdstke pqhhhkdkyl hvasdheyhr
      841 vdklakgats pskaspdqkl ppaektdlnd lasapretss gmfsrknnvs pspakphvlp
      901 pretqeatdv nkhsiisveh syasqmpehs krhtyprgap ypapatsrng trnaqagplv
      961 gkvlpfcrqq nsphhqrlle amamrrrrsl lfprlkedfa kshtvnvcgk svkvtchwda
     1021 eylfsldsry tkdalektvi ralhgpwdpd mpddveemkl ilhmwvalfy skpskflsst
     1081 rkvvehsnpe kyvsinssgd ilelsddged cfgletcpad srsdpdqips ssldrsthcq
     1141 gsfhpekspa dsqtdadgsp gvvdstvsss sgelpngeee psstscpesi sltehadesl
     1201 vvkdrqpavv pedrvqdvst itaedspkeg lldattnssp fgelgdvskp paapgmenpc
     1261 rqapnsstap wnaalrgcge qqesgwaaaa rngpgppddk enmrdaghct eieegsratr
     1321 dgpqhacesm pleahlkstk pgeasgeere sqdpfrhpek eegeveevkk ekedseyesp
     1381 gleavdlafs essdanmehe hseqepvnsa cpkdfgipge gpvpspaalv spspdrstpv
     1441 qpdgtetgpq rlpdemaprp dtlqepckal atpnaetngp glahtgrpad vgspcgsgsa
     1501 lplssdpslv ceaqrdsitd nvgpagetlr dnleqtykeg dgleqknner apsaerwata
     1561 gskatntagl espsltlspd snsvcrtsld gatdpaaape dqeamasiqs psqselggss
     1621 clpqrcggnv cadlnllsag esnqggkkvs veeqcgspsa sctdvldesc gagngqgftf
     1681 dctvlagase agesddvcls aeksprtdka dtvvitnaaq epdtslhhll esepsslvne
     1741 gmsavkehpk qhqsspnews ppacagsaps spreqdflpc grdadthhll leqseqgpvl
     1801 hehgepcesv gaeevslaae tpdgslkpkc aeevkkdtap chakqaessp vdvlvpgdlg
     1861 smppsplrgh kaglcstepd sglgvhtetl spgvslapdg sphsccmehe qvesspvdvl
     1921 vsgdlgsmpp splhghkagl cstepdsglh vhtetlspgm spapdgsphs ccmdttcpgs
     1981 aspggqvvdv vgsheeepil ledlesgssv plaspasfsp eqslvplykp qswheaevsd
     2041 tfpelhrasm evgegksptl pflmvpfrvh ggfsgessel sdaedasdml praeqlpskd
     2101 rhmgltfedq fqsfsgdsde eyfgrtsqsr gsystrsmdt adartncass tssehtegcs
     2161 eewcslgter gwtraehhwp iglgrtssgh ippyvnfrds qgftkdyqni mvtktfqerm
     2221 gkpqplkrhs hcagrshllr slrgtwrgfe eltqhtldme ylrfhyklkq ilrsgkppfs
     2281 tsksifpkdf spqvmsealp greapislsa rsrsplqvti lpsdawqsrl swrqpsslhe
     2341 dlcppwqdtl cgersrarsq trsqghpfhl sklrydnklk dshgdigdil deyakfhrvm
     2401 lsrvdarseg kgpipvceea tskctcaslp grmgtfedti tdlcdtlhsh lhslakeact
     2461 htsmfylvet gkdpffsrvk tllkkdghve ieplsfceae qpdtnrllvv irnedisshi
     2521 yhvpcllklk hcpnvvfagv dspedimght yqelfhtggf vvsddellem vtlgqlrevv
     2581 kvleklnrsg kwkwllhyke skklrghsrv danarkkdli lkscqgadli evlhyhtcds
     2641 gsspkseyvr clldlqvqhi sarfavylte kpsssrevle skgilvvdvn aflgtvqkva
     2701 apfrrsyw
//
LOCUS       XP_053913060            2708 aa            linear   VRT 09-MAR-2023
DEFINITION  protein TASOR 2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053913060
VERSION     XP_053913060.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057085.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2708
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2708
                     /product="protein TASOR 2 isoform X4"
                     /calculated_mol_wt=295805
     Region          68..209
                     /region_name="DUF3715"
                     /note="Protein of unknown function (DUF3715); pfam12509"
                     /db_xref="CDD:463613"
     Region          824..970
                     /region_name="DUF3715"
                     /note="Protein of unknown function (DUF3715); pfam12509"
                     /db_xref="CDD:463613"
     Region          1096..>1508
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     CDS             1..2708
                     /gene="TASOR2"
                     /coded_by="XM_054057085.1:158..8284"
                     /db_xref="GeneID:104061441"
ORIGIN      
        1 mgershrgfh leseesssll qtavsvlqrs yldsasqdsf qysqavlven dvflselkaf
       61 aqakeaagys qeeleetfaf llfdneeevk evcqaglrvn sssismlgdp akgvyiskya
      121 dclhlspwyh gksgyivick likgkvrvvs enyttsytcp spgydchvav sgdnipskts
      181 hcqafeqsqy yvyevsdgst verprqicpy iviacrykep kempllaven lpeldhkaly
      241 cpwrgqlsir gqllcdialr tpysstipaq lppnldinhv mglsdlkkkl peaafgkrny
      301 ienevcfqgv yfslyeveis kkdqykmdql vknlkekdla iikylqdrgv lilltssala
      361 rddgfdskep vgllalflfs ssrsvclrae khdpkdgree gdislkiasv lpglryalqk
      421 atssswddai stsnrikqhf qeytklgqcp qpisdqtned plsallspme dkgpnptqkc
      481 seqtfsqlqc ylsnpssytl evsaaleclt gavqslccds evdqkvdisp alppdpfppn
      541 taaeievkse nqkstmrpdq ieeeatkdin atsklwvqps rrkssqavvt strrmwsplk
      601 mqmhpvgdsg rnrkatkkkk iniafpfpkk ptlmassnep mlklahlqfp hrrkrgaevl
      661 saefvhrtqs epvkketsap ndpgvetkrp ktpkdpevek vpltetvpkp vesktlrnva
      721 nspskpqdkk qieseqkeps svlpskvssq rrgaesqmse iypsgvadlc sdlkgnnyes
      781 halnlladla lgscipsfmp rdsgmipvcf spssdstkep qhhhkdkylh vasdheyhrv
      841 dklakgatsp skaspdqklp paektdlndl asapretssg mfsrknnvsp spakphvlpp
      901 retqeatdvn khsiisvehs yasqmpehsk rhtyprgapy papatsrngt rnaqagplvg
      961 kvlpfcrqqn sphhqrllea mamrrrrsll fprlkedfak shtvnvcgks vkvtchwdae
     1021 ylfsldsryt kdalektvir alhgpwdpdm pddveemkli lhmwvalfys kpskflsstr
     1081 kvvehsnpek yvsinssgdi lelsddgedc fgletcpads rsdpdqipss sldrsthcqg
     1141 sfhpekspad sqtdadgspg vvdstvssss gelpngeeep sstscpesis ltehadeslv
     1201 vkdrqpavvp edrvqdvsti taedspkegl ldattnsspf gelgdvskpp aapgmenpcr
     1261 qapnsstapw naalrgcgeq qesgwaaaar ngpgppddke nmrdaghcte ieegsratrd
     1321 gpqhacesmp leahlkstkp geasgeeres qdpfrhpeke egeveevkke kedseyespg
     1381 leavdlafse ssdanmeheh seqepvnsac pkdfgipgeg pvpspaalvs pspdrstpvq
     1441 pdgtetgpqr lpdemaprpd tlqepckala tpnaetngpg lahtgrpadv gspcgsgsal
     1501 plssdpslvc eaqrdsitdn vgpagetlrd nleqtykegd gleqknnera psaerwatag
     1561 skatntagle spsltlspds nsvcrtsldg atdpaaaped qeamasiqsp sqselggssc
     1621 lpqrcggnvc adlnllsage snqggkkvsv eeqcgspsas ctdvldescg agngqgftfd
     1681 ctvlagasea gesddvclsa eksprtdkad tvvitnaaqe pdtslhhlle sepsslvneg
     1741 msavkehpkq hqsspnewsp pacagsapss preqdflpcg rdadthhlll eqseqgpvlh
     1801 ehgepcesvg aeevslaaet pdgslkpkca eevkkdtapc hakqaesspv dvlvpgdlgs
     1861 mppsplrghk aglcstepds glgvhtetls pgvslapdgs phsccmeheq vesspvdvlv
     1921 sgdlgsmpps plhghkaglc stepdsglhv htetlspgms papdgsphsc cmdttcpgsa
     1981 spggqvvdvv gsheeepill edlesgssvp laspasfspe qslvplykpq swheaevsdt
     2041 fpelhrasme vgegksptlp flmvpfrvhg gfsgessels daedasdmlp raeqlpskdr
     2101 hmgltfedqf qsfsgdsdee yfgrtsqsrg systrsmdta dartncasst ssehtegcse
     2161 ewcslgterg wtraehhwpi glgrtssghi ppyvnfrdsq gftkdyqnim vtktfqermg
     2221 kpqplkrhsh cagrshllrs lrgtwrgfee ltqhtldmey lrfhyklkqi lrsgkppfst
     2281 sksifpkdfs pqvmsealpg reapislsar srsplqvtil psdawqsrls wrqpsslhed
     2341 lcppwqdtlc gersrarsqt rsqghpfhls klrydnklkd shgdigdild eyakfhrvml
     2401 srvdarsegk gpipvceeat skctcaslpg rmgtfedtit dlcdtlhshl hslakeacth
     2461 tsmfylvetg kdpffsrvkt llkkdghvei eplsfceaeq pdtnrllvvi rnedisshiy
     2521 hvpcllklkh cpnvvfagvd spedimghty qelfhtggfv vsddellemv tlgqlrevvk
     2581 vleklnrsgk wkwllhykes kklrghssrv danarkkdli lkscqgadli evlhyhtcds
     2641 gsspkseyvr clldlqvqhi sarfavylte kpsssrevle skgilvvdvn aflgtvqkva
     2701 apfrrsyw
//
LOCUS       XP_053913061            2677 aa            linear   VRT 09-MAR-2023
DEFINITION  protein TASOR 2 isoform X5 [Cuculus canorus].
ACCESSION   XP_053913061
VERSION     XP_053913061.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057086.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2677
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2677
                     /product="protein TASOR 2 isoform X5"
                     /calculated_mol_wt=292225
     Region          47..177
                     /region_name="DUF3715"
                     /note="Protein of unknown function (DUF3715); pfam12509"
                     /db_xref="CDD:463613"
     Region          793..939
                     /region_name="DUF3715"
                     /note="Protein of unknown function (DUF3715); pfam12509"
                     /db_xref="CDD:463613"
     Region          1065..>1477
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     CDS             1..2677
                     /gene="TASOR2"
                     /coded_by="XM_054057086.1:158..8191"
                     /db_xref="GeneID:104061441"
ORIGIN      
        1 mgershrgfh leseesssll qtavsvlqrs yldsasqdsf qysqavlven dvflsevkev
       61 cqaglrvnss sismlgdpak gvyiskyadc lhlspwyhgk sgyivickli kgkvrvvsen
      121 yttsytcpsp gydchvavsg dnipsktshc qafeqsqyyv yevsdgstve rprqicpyiv
      181 iacrykepke mpllavenlp eldhkalycp wrgqlsirgq llcdialrtp ysstipaqlp
      241 pnldinhvmg lsdlkkklpe aafgkrnyie nevcfqgvyf slyeveiskk dqykmdqlvk
      301 nlkekdlaii kylqdrgvli lltssalard dgfdskepvg llalflfsss rsvclraaek
      361 hdpkdgreeg dislkiasvl pglryalqka tssswddais tsnrikqhfq eytklgqcpq
      421 pisdqtnedp lsallspmed kgpnptqkcs eqtfsqlqcy lsnpssytle vsaalecltg
      481 avqslccdse vdqkvdispa lppdpfppnt aaeievksen qkstmrpdqi eeeatkdina
      541 tsklwvqpsr rkssqavvts trrmwsplkm qmhpvgdsgr nrkatkkkki niafpfpkkp
      601 tlmassnepm lklahlqfph rrkrgaevls aefvhrtqse pvkketsapn dpgvetkrpk
      661 tpkdpevekv pltetvpkpv esktlrnvan spskpqdkkq ieseqkepss vlpskvssqr
      721 rgaesqmsei ypsgvadlcs dlkgnnyesh alnlladlal gscipsfmpr dsgmipvcfs
      781 pssdstkepq hhhkdkylhv asdheyhrvd klakgatsps kaspdqklpp aektdlndla
      841 sapretssgm fsrknnvsps pakphvlppr etqeatdvnk hsiisvehsy asqmpehskr
      901 htyprgapyp apatsrngtr naqagplvgk vlpfcrqqns phhqrlleam amrrrrsllf
      961 prlkedfaks htvnvcgksv kvtchwdaey lfsldsrytk dalektvira lhgpwdpdmp
     1021 ddveemklil hmwvalfysk pskflsstrk vvehsnpeky vsinssgdil elsddgedcf
     1081 gletcpadsr sdpdqipsss ldrsthcqgs fhpekspads qtdadgspgv vdstvssssg
     1141 elpngeeeps stscpesisl tehadeslvv kdrqpavvpe drvqdvstit aedspkegll
     1201 dattnsspfg elgdvskppa apgmenpcrq apnsstapwn aalrgcgeqq esgwaaaarn
     1261 gpgppddken mrdaghctei eegsratrdg pqhacesmpl eahlkstkpg easgeeresq
     1321 dpfrhpekee geveevkkek edseyespgl eavdlafses sdanmehehs eqepvnsacp
     1381 kdfgipgegp vpspaalvsp spdrstpvqp dgtetgpqrl pdemaprpdt lqepckalat
     1441 pnaetngpgl ahtgrpadvg spcgsgsalp lssdpslvce aqrdsitdnv gpagetlrdn
     1501 leqtykegdg leqknnerap saerwatags katntagles psltlspdsn svcrtsldga
     1561 tdpaaapedq eamasiqsps qselggsscl pqrcggnvca dlnllsages nqggkkvsve
     1621 eqcgspsasc tdvldescga gngqgftfdc tvlagaseag esddvclsae ksprtdkadt
     1681 vvitnaaqep dtslhhlles epsslvnegm savkehpkqh qsspnewspp acagsapssp
     1741 reqdflpcgr dadthhllle qseqgpvlhe hgepcesvga eevslaaetp dgslkpkcae
     1801 evkkdtapch akqaesspvd vlvpgdlgsm ppsplrghka glcstepdsg lgvhtetlsp
     1861 gvslapdgsp hsccmeheqv esspvdvlvs gdlgsmppsp lhghkaglcs tepdsglhvh
     1921 tetlspgmsp apdgsphscc mdttcpgsas pggqvvdvvg sheeepille dlesgssvpl
     1981 aspasfspeq slvplykpqs wheaevsdtf pelhrasmev gegksptlpf lmvpfrvhgg
     2041 fsgesselsd aedasdmlpr aeqlpskdrh mgltfedqfq sfsgdsdeey fgrtsqsrgs
     2101 ystrsmdtad artncassts sehtegcsee wcslgtergw traehhwpig lgrtssghip
     2161 pyvnfrdsqg ftkdyqnimv tktfqermgk pqplkrhshc agrshllrsl rgtwrgfeel
     2221 tqhtldmeyl rfhyklkqil rsgkppfsts ksifpkdfsp qvmsealpgr eapislsars
     2281 rsplqvtilp sdawqsrlsw rqpsslhedl cppwqdtlcg ersrarsqtr sqghpfhlsk
     2341 lrydnklkds hgdigdilde yakfhrvmls rvdarsegkg pipvceeats kctcaslpgr
     2401 mgtfedtitd lcdtlhshlh slakeactht smfylvetgk dpffsrvktl lkkdghveie
     2461 plsfceaeqp dtnrllvvir nedisshiyh vpcllklkhc pnvvfagvds pedimghtyq
     2521 elfhtggfvv sddellemvt lgqlrevvkv leklnrsgkw kwllhykesk klrghssrvd
     2581 anarkkdlil kscqgadlie vlhyhtcdsg sspkseyvrc lldlqvqhis arfavyltek
     2641 psssrevles kgilvvdvna flgtvqkvaa pfrrsyw
//
LOCUS       XP_053913063            2347 aa            linear   VRT 09-MAR-2023
DEFINITION  protein TASOR 2 isoform X6 [Cuculus canorus].
ACCESSION   XP_053913063
VERSION     XP_053913063.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057088.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2347
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2347
                     /product="protein TASOR 2 isoform X6"
                     /calculated_mol_wt=254792
     Region          463..609
                     /region_name="DUF3715"
                     /note="Protein of unknown function (DUF3715); pfam12509"
                     /db_xref="CDD:463613"
     Region          735..>1147
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     CDS             1..2347
                     /gene="TASOR2"
                     /coded_by="XM_054057088.1:161..7204"
                     /db_xref="GeneID:104061441"
ORIGIN      
        1 massgpvpav psppsvgdsr tghrtpaaek hdpkdgreeg dislkiasvl pglryalqka
       61 tssswddais tsnrikqhfq eytklgqcpq pisdqtnedp lsallspmed kgpnptqkcs
      121 eqtfsqlqcy lsnpssytle vsaalecltg avqslccdse vdqkvdispa lppdpfppnt
      181 aaeievksen qkstmrpdqi eeeatkdina tsklwvqpsr rkssqavvts trrmwsplkm
      241 qmhpvgdsgr nrkatkkkki niafpfpkkp tlmassnepm lklahlqfph rrkrgaevls
      301 aefvhrtqse pvkketsapn dpgvetkrpk tpkdpevekv pltetvpkpv esktlrnvan
      361 spskpqdkkq ieseqkepss vlpskvssqr rgaesqmsei ypsgvadlcs dlkgnnyesh
      421 alnlladlal gscipsfmpr dsgmipvcfs pssdstkepq hhhkdkylhv asdheyhrvd
      481 klakgatsps kaspdqklpp aektdlndla sapretssgm fsrknnvsps pakphvlppr
      541 etqeatdvnk hsiisvehsy asqmpehskr htyprgapyp apatsrngtr naqagplvgk
      601 vlpfcrqqns phhqrlleam amrrrrsllf prlkedfaks htvnvcgksv kvtchwdaey
      661 lfsldsrytk dalektvira lhgpwdpdmp ddveemklil hmwvalfysk pskflsstrk
      721 vvehsnpeky vsinssgdil elsddgedcf gletcpadsr sdpdqipsss ldrsthcqgs
      781 fhpekspads qtdadgspgv vdstvssssg elpngeeeps stscpesisl tehadeslvv
      841 kdrqpavvpe drvqdvstit aedspkegll dattnsspfg elgdvskppa apgmenpcrq
      901 apnsstapwn aalrgcgeqq esgwaaaarn gpgppddken mrdaghctei eegsratrdg
      961 pqhacesmpl eahlkstkpg easgeeresq dpfrhpekee geveevkkek edseyespgl
     1021 eavdlafses sdanmehehs eqepvnsacp kdfgipgegp vpspaalvsp spdrstpvqp
     1081 dgtetgpqrl pdemaprpdt lqepckalat pnaetngpgl ahtgrpadvg spcgsgsalp
     1141 lssdpslvce aqrdsitdnv gpagetlrdn leqtykegdg leqknnerap saerwatags
     1201 katntagles psltlspdsn svcrtsldga tdpaaapedq eamasiqsps qselggsscl
     1261 pqrcggnvca dlnllsages nqggkkvsve eqcgspsasc tdvldescga gngqgftfdc
     1321 tvlagaseag esddvclsae ksprtdkadt vvitnaaqep dtslhhlles epsslvnegm
     1381 savkehpkqh qsspnewspp acagsapssp reqdflpcgr dadthhllle qseqgpvlhe
     1441 hgepcesvga eevslaaetp dgslkpkcae evkkdtapch akqaesspvd vlvpgdlgsm
     1501 ppsplrghka glcstepdsg lgvhtetlsp gvslapdgsp hsccmeheqv esspvdvlvs
     1561 gdlgsmppsp lhghkaglcs tepdsglhvh tetlspgmsp apdgsphscc mdttcpgsas
     1621 pggqvvdvvg sheeepille dlesgssvpl aspasfspeq slvplykpqs wheaevsdtf
     1681 pelhrasmev gegksptlpf lmvpfrvhgg fsgesselsd aedasdmlpr aeqlpskdrh
     1741 mgltfedqfq sfsgdsdeey fgrtsqsrgs ystrsmdtad artncassts sehtegcsee
     1801 wcslgtergw traehhwpig lgrtssghip pyvnfrdsqg ftkdyqnimv tktfqermgk
     1861 pqplkrhshc agrshllrsl rgtwrgfeel tqhtldmeyl rfhyklkqil rsgkppfsts
     1921 ksifpkdfsp qvmsealpgr eapislsars rsplqvtilp sdawqsrlsw rqpsslhedl
     1981 cppwqdtlcg ersrarsqtr sqghpfhlsk lrydnklkds hgdigdilde yakfhrvmls
     2041 rvdarsegkg pipvceeats kctcaslpgr mgtfedtitd lcdtlhshlh slakeactht
     2101 smfylvetgk dpffsrvktl lkkdghveie plsfceaeqp dtnrllvvir nedisshiyh
     2161 vpcllklkhc pnvvfagvds pedimghtyq elfhtggfvv sddellemvt lgqlrevvkv
     2221 leklnrsgkw kwllhykesk klrghssrvd anarkkdlil kscqgadlie vlhyhtcdsg
     2281 sspkseyvrc lldlqvqhis arfavyltek psssrevles kgilvvdvna flgtvqkvaa
     2341 pfrrsyw
//
LOCUS       XP_053913073            2347 aa            linear   VRT 09-MAR-2023
DEFINITION  protein TASOR 2 isoform X6 [Cuculus canorus].
ACCESSION   XP_053913073
VERSION     XP_053913073.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057098.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2347
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2347
                     /product="protein TASOR 2 isoform X6"
                     /calculated_mol_wt=254792
     Region          463..609
                     /region_name="DUF3715"
                     /note="Protein of unknown function (DUF3715); pfam12509"
                     /db_xref="CDD:463613"
     Region          735..>1147
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     CDS             1..2347
                     /gene="TASOR2"
                     /coded_by="XM_054057098.1:161..7204"
                     /db_xref="GeneID:104061441"
ORIGIN      
        1 massgpvpav psppsvgdsr tghrtpaaek hdpkdgreeg dislkiasvl pglryalqka
       61 tssswddais tsnrikqhfq eytklgqcpq pisdqtnedp lsallspmed kgpnptqkcs
      121 eqtfsqlqcy lsnpssytle vsaalecltg avqslccdse vdqkvdispa lppdpfppnt
      181 aaeievksen qkstmrpdqi eeeatkdina tsklwvqpsr rkssqavvts trrmwsplkm
      241 qmhpvgdsgr nrkatkkkki niafpfpkkp tlmassnepm lklahlqfph rrkrgaevls
      301 aefvhrtqse pvkketsapn dpgvetkrpk tpkdpevekv pltetvpkpv esktlrnvan
      361 spskpqdkkq ieseqkepss vlpskvssqr rgaesqmsei ypsgvadlcs dlkgnnyesh
      421 alnlladlal gscipsfmpr dsgmipvcfs pssdstkepq hhhkdkylhv asdheyhrvd
      481 klakgatsps kaspdqklpp aektdlndla sapretssgm fsrknnvsps pakphvlppr
      541 etqeatdvnk hsiisvehsy asqmpehskr htyprgapyp apatsrngtr naqagplvgk
      601 vlpfcrqqns phhqrlleam amrrrrsllf prlkedfaks htvnvcgksv kvtchwdaey
      661 lfsldsrytk dalektvira lhgpwdpdmp ddveemklil hmwvalfysk pskflsstrk
      721 vvehsnpeky vsinssgdil elsddgedcf gletcpadsr sdpdqipsss ldrsthcqgs
      781 fhpekspads qtdadgspgv vdstvssssg elpngeeeps stscpesisl tehadeslvv
      841 kdrqpavvpe drvqdvstit aedspkegll dattnsspfg elgdvskppa apgmenpcrq
      901 apnsstapwn aalrgcgeqq esgwaaaarn gpgppddken mrdaghctei eegsratrdg
      961 pqhacesmpl eahlkstkpg easgeeresq dpfrhpekee geveevkkek edseyespgl
     1021 eavdlafses sdanmehehs eqepvnsacp kdfgipgegp vpspaalvsp spdrstpvqp
     1081 dgtetgpqrl pdemaprpdt lqepckalat pnaetngpgl ahtgrpadvg spcgsgsalp
     1141 lssdpslvce aqrdsitdnv gpagetlrdn leqtykegdg leqknnerap saerwatags
     1201 katntagles psltlspdsn svcrtsldga tdpaaapedq eamasiqsps qselggsscl
     1261 pqrcggnvca dlnllsages nqggkkvsve eqcgspsasc tdvldescga gngqgftfdc
     1321 tvlagaseag esddvclsae ksprtdkadt vvitnaaqep dtslhhlles epsslvnegm
     1381 savkehpkqh qsspnewspp acagsapssp reqdflpcgr dadthhllle qseqgpvlhe
     1441 hgepcesvga eevslaaetp dgslkpkcae evkkdtapch akqaesspvd vlvpgdlgsm
     1501 ppsplrghka glcstepdsg lgvhtetlsp gvslapdgsp hsccmeheqv esspvdvlvs
     1561 gdlgsmppsp lhghkaglcs tepdsglhvh tetlspgmsp apdgsphscc mdttcpgsas
     1621 pggqvvdvvg sheeepille dlesgssvpl aspasfspeq slvplykpqs wheaevsdtf
     1681 pelhrasmev gegksptlpf lmvpfrvhgg fsgesselsd aedasdmlpr aeqlpskdrh
     1741 mgltfedqfq sfsgdsdeey fgrtsqsrgs ystrsmdtad artncassts sehtegcsee
     1801 wcslgtergw traehhwpig lgrtssghip pyvnfrdsqg ftkdyqnimv tktfqermgk
     1861 pqplkrhshc agrshllrsl rgtwrgfeel tqhtldmeyl rfhyklkqil rsgkppfsts
     1921 ksifpkdfsp qvmsealpgr eapislsars rsplqvtilp sdawqsrlsw rqpsslhedl
     1981 cppwqdtlcg ersrarsqtr sqghpfhlsk lrydnklkds hgdigdilde yakfhrvmls
     2041 rvdarsegkg pipvceeats kctcaslpgr mgtfedtitd lcdtlhshlh slakeactht
     2101 smfylvetgk dpffsrvktl lkkdghveie plsfceaeqp dtnrllvvir nedisshiyh
     2161 vpcllklkhc pnvvfagvds pedimghtyq elfhtggfvv sddellemvt lgqlrevvkv
     2221 leklnrsgkw kwllhykesk klrghssrvd anarkkdlil kscqgadlie vlhyhtcdsg
     2281 sspkseyvrc lldlqvqhis arfavyltek psssrevles kgilvvdvna flgtvqkvaa
     2341 pfrrsyw
//
LOCUS       XP_053913079            2346 aa            linear   VRT 09-MAR-2023
DEFINITION  protein TASOR 2 isoform X7 [Cuculus canorus].
ACCESSION   XP_053913079
VERSION     XP_053913079.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057104.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2346
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2346
                     /product="protein TASOR 2 isoform X7"
                     /calculated_mol_wt=254721
     Region          462..608
                     /region_name="DUF3715"
                     /note="Protein of unknown function (DUF3715); pfam12509"
                     /db_xref="CDD:463613"
     Region          734..>1146
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     CDS             1..2346
                     /gene="TASOR2"
                     /coded_by="XM_054057104.1:161..7201"
                     /db_xref="GeneID:104061441"
ORIGIN      
        1 massgpvpav psppsvgdsr tghrtpaekh dpkdgreegd islkiasvlp glryalqkat
       61 ssswddaist snrikqhfqe ytklgqcpqp isdqtnedpl sallspmedk gpnptqkcse
      121 qtfsqlqcyl snpssytlev saalecltga vqslccdsev dqkvdispal ppdpfppnta
      181 aeievksenq kstmrpdqie eeatkdinat sklwvqpsrr kssqavvtst rrmwsplkmq
      241 mhpvgdsgrn rkatkkkkin iafpfpkkpt lmassnepml klahlqfphr rkrgaevlsa
      301 efvhrtqsep vkketsapnd pgvetkrpkt pkdpevekvp ltetvpkpve sktlrnvans
      361 pskpqdkkqi eseqkepssv lpskvssqrr gaesqmseiy psgvadlcsd lkgnnyesha
      421 lnlladlalg scipsfmprd sgmipvcfsp ssdstkepqh hhkdkylhva sdheyhrvdk
      481 lakgatspsk aspdqklppa ektdlndlas apretssgmf srknnvspsp akphvlppre
      541 tqeatdvnkh siisvehsya sqmpehskrh typrgapypa patsrngtrn aqagplvgkv
      601 lpfcrqqnsp hhqrlleama mrrrrsllfp rlkedfaksh tvnvcgksvk vtchwdaeyl
      661 fsldsrytkd alektviral hgpwdpdmpd dveemklilh mwvalfyskp skflsstrkv
      721 vehsnpekyv sinssgdile lsddgedcfg letcpadsrs dpdqipsssl drsthcqgsf
      781 hpekspadsq tdadgspgvv dstvssssge lpngeeepss tscpesislt ehadeslvvk
      841 drqpavvped rvqdvstita edspkeglld attnsspfge lgdvskppaa pgmenpcrqa
      901 pnsstapwna alrgcgeqqe sgwaaaarng pgppddkenm rdaghcteie egsratrdgp
      961 qhacesmple ahlkstkpge asgeeresqd pfrhpekeeg eveevkkeke dseyespgle
     1021 avdlafsess danmehehse qepvnsacpk dfgipgegpv pspaalvsps pdrstpvqpd
     1081 gtetgpqrlp demaprpdtl qepckalatp naetngpgla htgrpadvgs pcgsgsalpl
     1141 ssdpslvcea qrdsitdnvg pagetlrdnl eqtykegdgl eqknneraps aerwatagsk
     1201 atntaglesp sltlspdsns vcrtsldgat dpaaapedqe amasiqspsq selggssclp
     1261 qrcggnvcad lnllsagesn qggkkvsvee qcgspsasct dvldescgag ngqgftfdct
     1321 vlagaseage sddvclsaek sprtdkadtv vitnaaqepd tslhhllese psslvnegms
     1381 avkehpkqhq sspnewsppa cagsapsspr eqdflpcgrd adthhllleq seqgpvlheh
     1441 gepcesvgae evslaaetpd gslkpkcaee vkkdtapcha kqaesspvdv lvpgdlgsmp
     1501 psplrghkag lcstepdsgl gvhtetlspg vslapdgsph sccmeheqve sspvdvlvsg
     1561 dlgsmppspl hghkaglcst epdsglhvht etlspgmspa pdgsphsccm dttcpgsasp
     1621 ggqvvdvvgs heeepilled lesgssvpla spasfspeqs lvplykpqsw heaevsdtfp
     1681 elhrasmevg egksptlpfl mvpfrvhggf sgesselsda edasdmlpra eqlpskdrhm
     1741 gltfedqfqs fsgdsdeeyf grtsqsrgsy strsmdtada rtncasstss ehtegcseew
     1801 cslgtergwt raehhwpigl grtssghipp yvnfrdsqgf tkdyqnimvt ktfqermgkp
     1861 qplkrhshca grshllrslr gtwrgfeelt qhtldmeylr fhyklkqilr sgkppfstsk
     1921 sifpkdfspq vmsealpgre apislsarsr splqvtilps dawqsrlswr qpsslhedlc
     1981 ppwqdtlcge rsrarsqtrs qghpfhlskl rydnklkdsh gdigdildey akfhrvmlsr
     2041 vdarsegkgp ipvceeatsk ctcaslpgrm gtfedtitdl cdtlhshlhs lakeacthts
     2101 mfylvetgkd pffsrvktll kkdghveiep lsfceaeqpd tnrllvvirn edisshiyhv
     2161 pcllklkhcp nvvfagvdsp edimghtyqe lfhtggfvvs ddellemvtl gqlrevvkvl
     2221 eklnrsgkwk wllhykeskk lrghssrvda narkkdlilk scqgadliev lhyhtcdsgs
     2281 spkseyvrcl ldlqvqhisa rfavyltekp sssrevlesk gilvvdvnaf lgtvqkvaap
     2341 frrsyw
//
LOCUS       XP_053913089            2346 aa            linear   VRT 09-MAR-2023
DEFINITION  protein TASOR 2 isoform X7 [Cuculus canorus].
ACCESSION   XP_053913089
VERSION     XP_053913089.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057114.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2346
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2346
                     /product="protein TASOR 2 isoform X7"
                     /calculated_mol_wt=254721
     Region          462..608
                     /region_name="DUF3715"
                     /note="Protein of unknown function (DUF3715); pfam12509"
                     /db_xref="CDD:463613"
     Region          734..>1146
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     CDS             1..2346
                     /gene="TASOR2"
                     /coded_by="XM_054057114.1:161..7201"
                     /db_xref="GeneID:104061441"
ORIGIN      
        1 massgpvpav psppsvgdsr tghrtpaekh dpkdgreegd islkiasvlp glryalqkat
       61 ssswddaist snrikqhfqe ytklgqcpqp isdqtnedpl sallspmedk gpnptqkcse
      121 qtfsqlqcyl snpssytlev saalecltga vqslccdsev dqkvdispal ppdpfppnta
      181 aeievksenq kstmrpdqie eeatkdinat sklwvqpsrr kssqavvtst rrmwsplkmq
      241 mhpvgdsgrn rkatkkkkin iafpfpkkpt lmassnepml klahlqfphr rkrgaevlsa
      301 efvhrtqsep vkketsapnd pgvetkrpkt pkdpevekvp ltetvpkpve sktlrnvans
      361 pskpqdkkqi eseqkepssv lpskvssqrr gaesqmseiy psgvadlcsd lkgnnyesha
      421 lnlladlalg scipsfmprd sgmipvcfsp ssdstkepqh hhkdkylhva sdheyhrvdk
      481 lakgatspsk aspdqklppa ektdlndlas apretssgmf srknnvspsp akphvlppre
      541 tqeatdvnkh siisvehsya sqmpehskrh typrgapypa patsrngtrn aqagplvgkv
      601 lpfcrqqnsp hhqrlleama mrrrrsllfp rlkedfaksh tvnvcgksvk vtchwdaeyl
      661 fsldsrytkd alektviral hgpwdpdmpd dveemklilh mwvalfyskp skflsstrkv
      721 vehsnpekyv sinssgdile lsddgedcfg letcpadsrs dpdqipsssl drsthcqgsf
      781 hpekspadsq tdadgspgvv dstvssssge lpngeeepss tscpesislt ehadeslvvk
      841 drqpavvped rvqdvstita edspkeglld attnsspfge lgdvskppaa pgmenpcrqa
      901 pnsstapwna alrgcgeqqe sgwaaaarng pgppddkenm rdaghcteie egsratrdgp
      961 qhacesmple ahlkstkpge asgeeresqd pfrhpekeeg eveevkkeke dseyespgle
     1021 avdlafsess danmehehse qepvnsacpk dfgipgegpv pspaalvsps pdrstpvqpd
     1081 gtetgpqrlp demaprpdtl qepckalatp naetngpgla htgrpadvgs pcgsgsalpl
     1141 ssdpslvcea qrdsitdnvg pagetlrdnl eqtykegdgl eqknneraps aerwatagsk
     1201 atntaglesp sltlspdsns vcrtsldgat dpaaapedqe amasiqspsq selggssclp
     1261 qrcggnvcad lnllsagesn qggkkvsvee qcgspsasct dvldescgag ngqgftfdct
     1321 vlagaseage sddvclsaek sprtdkadtv vitnaaqepd tslhhllese psslvnegms
     1381 avkehpkqhq sspnewsppa cagsapsspr eqdflpcgrd adthhllleq seqgpvlheh
     1441 gepcesvgae evslaaetpd gslkpkcaee vkkdtapcha kqaesspvdv lvpgdlgsmp
     1501 psplrghkag lcstepdsgl gvhtetlspg vslapdgsph sccmeheqve sspvdvlvsg
     1561 dlgsmppspl hghkaglcst epdsglhvht etlspgmspa pdgsphsccm dttcpgsasp
     1621 ggqvvdvvgs heeepilled lesgssvpla spasfspeqs lvplykpqsw heaevsdtfp
     1681 elhrasmevg egksptlpfl mvpfrvhggf sgesselsda edasdmlpra eqlpskdrhm
     1741 gltfedqfqs fsgdsdeeyf grtsqsrgsy strsmdtada rtncasstss ehtegcseew
     1801 cslgtergwt raehhwpigl grtssghipp yvnfrdsqgf tkdyqnimvt ktfqermgkp
     1861 qplkrhshca grshllrslr gtwrgfeelt qhtldmeylr fhyklkqilr sgkppfstsk
     1921 sifpkdfspq vmsealpgre apislsarsr splqvtilps dawqsrlswr qpsslhedlc
     1981 ppwqdtlcge rsrarsqtrs qghpfhlskl rydnklkdsh gdigdildey akfhrvmlsr
     2041 vdarsegkgp ipvceeatsk ctcaslpgrm gtfedtitdl cdtlhshlhs lakeacthts
     2101 mfylvetgkd pffsrvktll kkdghveiep lsfceaeqpd tnrllvvirn edisshiyhv
     2161 pcllklkhcp nvvfagvdsp edimghtyqe lfhtggfvvs ddellemvtl gqlrevvkvl
     2221 eklnrsgkwk wllhykeskk lrghssrvda narkkdlilk scqgadliev lhyhtcdsgs
     2281 spkseyvrcl ldlqvqhisa rfavyltekp sssrevlesk gilvvdvnaf lgtvqkvaap
     2341 frrsyw
//
LOCUS       XP_053913092             448 aa            linear   VRT 09-MAR-2023
DEFINITION  rab GDP dissociation inhibitor beta [Cuculus canorus].
ACCESSION   XP_053913092
VERSION     XP_053913092.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057117.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..448
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..448
                     /product="rab GDP dissociation inhibitor beta"
                     /calculated_mol_wt=50583
     Region          1..436
                     /region_name="GDI"
                     /note="GDP dissociation inhibitor; pfam00996"
                     /db_xref="CDD:395792"
     CDS             1..448
                     /gene="GDI2"
                     /coded_by="XM_054057117.1:138..1484"
                     /db_xref="GeneID:104061440"
ORIGIN      
        1 mneeydvivl gtgltecils gimsvngkkv lhmdrnsyyg gesasitple dlykrfnlpg
       61 tppesmgrgr dwnvdlipkf lmangqlvkm llytevtryl dfkviegsfv ykggkiykvp
      121 steaealass lmglfekrrf rkflvyvanf dendprtfeg vdpkkttmrd vykkfdlgqd
      181 vidftghala lyrtddyldq pcqetinrik lyseslaryg kspylyplyg lgelpqgfar
      241 lsaiyggtym lnkpieeivi engkvvgvks egevarckql icdpsyvsdr vtkvgqvirv
      301 icilshpikn tndanscqii ipqnqvnrks diyvcmissa hnvaaqgkyi aiasttveta
      361 dpekeikpal dllepieqkf vsisdlfapt dlgtesqifi srtydatthf ettcddikdi
      421 ykrmmgsefd feemkrkknd iygeeeqq
//
LOCUS       XP_053913097             436 aa            linear   VRT 09-MAR-2023
DEFINITION  homeobox protein PKNOX1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053913097
VERSION     XP_053913097.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057122.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..436
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..436
                     /product="homeobox protein PKNOX1 isoform X1"
                     /calculated_mol_wt=47382
     Region          80..165
                     /region_name="Meis_PKNOX_N"
                     /note="N-terminal of Homeobox Meis and PKNOX1; pfam16493"
                     /db_xref="CDD:465140"
     Site            order(260..264,266,286,292,305,307..308,311..312,314..316)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     Site            order(262,265,308,311..312,315)
                     /site_type="other"
                     /note="specific DNA base contacts [nucleotide binding]"
                     /db_xref="CDD:238039"
     Region          278..316
                     /region_name="Homeobox_KN"
                     /note="Homeobox KN domain; pfam05920"
                     /db_xref="CDD:428673"
     CDS             1..436
                     /gene="PKNOX1"
                     /coded_by="XM_054057122.1:272..1582"
                     /db_xref="GeneID:104059239"
ORIGIN      
        1 mmatqtlsid nypdgqqmqv vtelkteqdp ncsetdaegv spapvesqtp mdadkqaiyr
       61 hplfpllall fekceqstqg segttsasfd vdienfvrkq ekegkpffce dpetdnlmvk
      121 aiqvlrihll elekvnelck dfcsryiacl ktkmnsetll sgepgspysp vqsqqipsai
      181 agtlspqgim vpasalqqgn vtmatvaggt vyqpvtvvtp qgqvvtqals pgtiriqnsq
      241 lqlqlnqdlg ilhqddgssk nkrgvlpkha tnvmrswlfq highpypted ekkqiaaqtn
      301 ltllqvnnwf inarrrilqp mldsscsetp ktkkktaqnr pvqrfwpdsi asgvaqqqsn
      361 eltmsdgavv titapvnmnv dslqslssdg atlavqqvmm agqsedesvd sgeddggdls
      421 ttnisglvld nsdslq
//
LOCUS       XP_053913106             436 aa            linear   VRT 09-MAR-2023
DEFINITION  homeobox protein PKNOX1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053913106
VERSION     XP_053913106.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057131.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..436
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..436
                     /product="homeobox protein PKNOX1 isoform X1"
                     /calculated_mol_wt=47382
     Region          80..165
                     /region_name="Meis_PKNOX_N"
                     /note="N-terminal of Homeobox Meis and PKNOX1; pfam16493"
                     /db_xref="CDD:465140"
     Site            order(260..264,266,286,292,305,307..308,311..312,314..316)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     Site            order(262,265,308,311..312,315)
                     /site_type="other"
                     /note="specific DNA base contacts [nucleotide binding]"
                     /db_xref="CDD:238039"
     Region          278..316
                     /region_name="Homeobox_KN"
                     /note="Homeobox KN domain; pfam05920"
                     /db_xref="CDD:428673"
     CDS             1..436
                     /gene="PKNOX1"
                     /coded_by="XM_054057131.1:1011..2321"
                     /db_xref="GeneID:104059239"
ORIGIN      
        1 mmatqtlsid nypdgqqmqv vtelkteqdp ncsetdaegv spapvesqtp mdadkqaiyr
       61 hplfpllall fekceqstqg segttsasfd vdienfvrkq ekegkpffce dpetdnlmvk
      121 aiqvlrihll elekvnelck dfcsryiacl ktkmnsetll sgepgspysp vqsqqipsai
      181 agtlspqgim vpasalqqgn vtmatvaggt vyqpvtvvtp qgqvvtqals pgtiriqnsq
      241 lqlqlnqdlg ilhqddgssk nkrgvlpkha tnvmrswlfq highpypted ekkqiaaqtn
      301 ltllqvnnwf inarrrilqp mldsscsetp ktkkktaqnr pvqrfwpdsi asgvaqqqsn
      361 eltmsdgavv titapvnmnv dslqslssdg atlavqqvmm agqsedesvd sgeddggdls
      421 ttnisglvld nsdslq
//
LOCUS       XP_053913115             319 aa            linear   VRT 09-MAR-2023
DEFINITION  homeobox protein PKNOX1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053913115
VERSION     XP_053913115.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057140.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..319
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..319
                     /product="homeobox protein PKNOX1 isoform X2"
                     /calculated_mol_wt=34349
     Region          <1..48
                     /region_name="Meis_PKNOX_N"
                     /note="N-terminal of Homeobox Meis and PKNOX1; pfam16493"
                     /db_xref="CDD:465140"
     Site            order(143..147,149,169,175,188,190..191,194..195,197..199)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     Site            order(145,148,191,194..195,198)
                     /site_type="other"
                     /note="specific DNA base contacts [nucleotide binding]"
                     /db_xref="CDD:238039"
     Region          161..199
                     /region_name="Homeobox_KN"
                     /note="Homeobox KN domain; pfam05920"
                     /db_xref="CDD:428673"
     CDS             1..319
                     /gene="PKNOX1"
                     /coded_by="XM_054057140.1:205..1164"
                     /db_xref="GeneID:104059239"
ORIGIN      
        1 mvkaiqvlri hllelekvne lckdfcsryi aclktkmnse tllsgepgsp yspvqsqqip
       61 saiagtlspq gimvpasalq qgnvtmatva ggtvyqpvtv vtpqgqvvtq alspgtiriq
      121 nsqlqlqlnq dlgilhqddg ssknkrgvlp khatnvmrsw lfqhighpyp tedekkqiaa
      181 qtnltllqvn nwfinarrri lqpmldsscs etpktkkkta qnrpvqrfwp dsiasgvaqq
      241 qsneltmsdg avvtitapvn mnvdslqsls sdgatlavqq vmmagqsede svdsgeddgg
      301 dlsttnisgl vldnsdslq
//
LOCUS       XP_053913127             168 aa            linear   VRT 09-MAR-2023
DEFINITION  fibulin-2-like [Cuculus canorus].
ACCESSION   XP_053913127
VERSION     XP_053913127.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057152.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..168
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..168
                     /product="fibulin-2-like"
                     /calculated_mol_wt=17079
     CDS             1..168
                     /gene="LOC128851102"
                     /coded_by="XM_054057152.1:178..684"
                     /db_xref="GeneID:128851102"
ORIGIN      
        1 mavagalcll ficlllsgva pkptcdpsac tpcpvrdveg pttttagacc ppcpstcacp
       61 pylesdcemq gfasghiptg hsfyidfark lctchpsgdi tcaslcptvp ptcravgssv
      121 adgcpqcicy deeemavpag tvtargsqic tcpaeggqlq csesksme
//
LOCUS       XP_053913141             749 aa            linear   VRT 09-MAR-2023
DEFINITION  protein artemis isoform X1 [Cuculus canorus].
ACCESSION   XP_053913141
VERSION     XP_053913141.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057166.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..749
                     /product="protein artemis isoform X1"
                     /calculated_mol_wt=83823
     Region          <93..210
                     /region_name="metallo-hydrolase-like_MBL-fold"
                     /note="mainly hydrolytic enzymes and related proteins
                     which carry out various biological functions; MBL-fold
                     metallohydrolase domain; cl23716"
                     /db_xref="CDD:451500"
     Region          278..384
                     /region_name="DRMBL"
                     /note="DNA repair metallo-beta-lactamase; pfam07522"
                     /db_xref="CDD:429512"
     Region          <517..712
                     /region_name="MSCRAMM_ClfA"
                     /note="MSCRAMM family adhesin clumping factor ClfA;
                     NF033609"
                     /db_xref="CDD:468110"
     CDS             1..749
                     /gene="DCLRE1C"
                     /coded_by="XM_054057166.1:1112..3361"
                     /db_xref="GeneID:104066417"
ORIGIN      
        1 mpalphkepl psfsgglfky wkapvrspws llfsrlnnsn slslsscgry sipliifvas
       61 sgppqvipvl ymssctetff isaqkythtd mhslkvklyc spvtkelllt swkykfwenh
      121 ivalevetpt qislvdetsg ekedievtll paghcpgsvm flfeggngtv lytgdfrlak
      181 geaarmellh sgtrvkdiqs vyldttfcdp kfyhipsree clngilelvr swtsltrnhv
      241 vwlnckaayg yeylfinlse elgikvhvnk ldmfrnmpei lyhvttdrct qihacrhpqd
      301 ddcirgnrlp cgmtcqngap lhiisikpst mwfgerikkt nvivrtgest yracfsfhss
      361 yseikdflsy ihpvnvypnv lpvggtedrl meilkplcra yrrnmepryk plgtlkrlhk
      421 rdlsdtdedd lfdtelisar pkipkqqree skpsstgqpe naegnisksi nsyqvpttyt
      481 sfkvdfmdce esnddedddd deeseknvvp ilsqepdats psncngvtgd qqesdaevpr
      541 wdaffkcnnl eessenednf psstdaggsq slfsdsdgvs dsthissqns sqsthiseqg
      601 sqgwdsqtdt vlitsqerna ldfscfskgg sralvsivqe takdsqpgss rakplgqhta
      661 cafdaacdlk skdcekdaed stvhvqdalm elsdssrtpd lelrrdsqss sdfeiplmpd
      721 aevprldklh clykklaage niikekqvs
//
LOCUS       XP_053913150             710 aa            linear   VRT 09-MAR-2023
DEFINITION  protein artemis isoform X2 [Cuculus canorus].
ACCESSION   XP_053913150
VERSION     XP_053913150.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057175.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..710
                     /product="protein artemis isoform X2"
                     /calculated_mol_wt=79852
     Region          1..171
                     /region_name="artemis-SNM1C-like_MBL-fold"
                     /note="artemis-SNM1C and related proteins; MBL-fold
                     metallo-hydrolase domain; cd16297"
                     /db_xref="CDD:293855"
     Site            order(33,35,37..38,115..116,136,166)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:293855"
     Region          239..345
                     /region_name="DRMBL"
                     /note="DNA repair metallo-beta-lactamase; pfam07522"
                     /db_xref="CDD:429512"
     Region          <478..673
                     /region_name="MSCRAMM_ClfA"
                     /note="MSCRAMM family adhesin clumping factor ClfA;
                     NF033609"
                     /db_xref="CDD:468110"
     CDS             1..710
                     /gene="DCLRE1C"
                     /coded_by="XM_054057175.1:23..2155"
                     /db_xref="GeneID:104066417"
ORIGIN      
        1 msrfggrvre ypavsidrfd hdnlrarayf lshchkdhmr glrapalrrr legslkvkly
       61 cspvtkelll tswkykfwen hivalevetp tqislvdets gekedievtl lpaghcpgsv
      121 mflfeggngt vlytgdfrla kgeaarmell hsgtrvkdiq svyldttfcd pkfyhipsre
      181 eclngilelv rswtsltrnh vvwlnckaay gyeylfinls eelgikvhvn kldmfrnmpe
      241 ilyhvttdrc tqihacrhpq dddcirgnrl pcgmtcqnga plhiisikps tmwfgerikk
      301 tnvivrtges tyracfsfhs syseikdfls yihpvnvypn vlpvggtedr lmeilkplcr
      361 ayrrnmepry kplgtlkrlh krdlsdtded dlfdtelisa rpkipkqqre eskpsstgqp
      421 enaegnisks insyqvptty tsfkvdfmdc eesnddeddd ddeeseknvv pilsqepdat
      481 spsncngvtg dqqesdaevp rwdaffkcnn leessenedn fpsstdaggs qslfsdsdgv
      541 sdsthissqn ssqsthiseq gsqgwdsqtd tvlitsqern aldfscfskg gsralvsivq
      601 etakdsqpgs srakplgqht acafdaacdl kskdcekdae dstvhvqdal melsdssrtp
      661 dlelrrdsqs ssdfeiplmp daevprldkl hclykklaag eniikekqvs
//
LOCUS       XP_009567038             506 aa            linear   VRT 09-MAR-2023
DEFINITION  heat shock 70 kDa protein 14 [Cuculus canorus].
ACCESSION   XP_009567038
VERSION     XP_009567038.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568743.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567038.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..506
                     /product="heat shock 70 kDa protein 14"
                     /calculated_mol_wt=53961
     Region          2..374
                     /region_name="ASKHA_NBD_HSP70_HSPA14"
                     /note="nucleotide-binding domain (NBD) of heat shock 70
                     kDa protein 14 (HSPA14) and similar proteins; cd10238"
                     /db_xref="CDD:466836"
     CDS             1..506
                     /gene="HSPA14"
                     /coded_by="XM_009568743.2:48..1568"
                     /db_xref="GeneID:104066169"
ORIGIN      
        1 maaigvhlga tcacaavykd gradvvanda gdrvtpavva fseseevvgl aakqsrirni
       61 sntvvkvkqi lgrrsgdpqa ekyitetkcs viekngklly eidnklitpe dvaklifskm
      121 ketaqsalgs dvndvvitvp fdfgenqkna lgeaaaaagf nvmrliheps aallaygigq
      181 dsptgksnvl vyklggtsls itvievnsgi yrvlatntdd siggvcftea laqhlasefq
      241 rsckhdirgn prammklmns adtakhslst lgsancfvds lydgldfdcn vsrarfelic
      301 sslfskcvea ikkllqqvgf taddinkvvl cggsaripkl qqlikdifpn vellnsippd
      361 evipigaaie agillgkenp lldeaalfie csakdilvkg vdesgadkft vlfpsgtplp
      421 arrqhtlhap gnissvclel yeslgkspmn eegkfaqivl qdldkkedgl hdiltvltmk
      481 sdgslhvtct dqdtgkceii tvevas
//
LOCUS       XP_053913175             406 aa            linear   VRT 09-MAR-2023
DEFINITION  histone-lysine N-methyltransferase SUV39H2 [Cuculus canorus].
ACCESSION   XP_053913175
VERSION     XP_053913175.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057200.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..406
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..406
                     /product="histone-lysine N-methyltransferase SUV39H2"
                     /calculated_mol_wt=46415
     Region          43..91
                     /region_name="CD_SUV39H1_like"
                     /note="chromodomain of histone methyltransferase SUV39H1,
                     and similar proteins; cd18639"
                     /db_xref="CDD:349289"
     Site            order(43..47,62,64..67,71,73..76,78..79,85,88..89)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:349289"
     Region          163..405
                     /region_name="SET_SUV39H2"
                     /note="SET domain (including pre-SET and post-SET domains)
                     found in suppressor of variegation 3-9 homolog 2 (SUV39H2)
                     and similar proteins; cd10532"
                     /db_xref="CDD:380930"
     Site            order(257..259,299..300,323..327,368,393..396,405)
                     /site_type="other"
                     /note="putative SAM binding site"
                     /db_xref="CDD:380930"
     Site            order(257..259,276,283,286..287,289,298..303,306,312,
                     323..327,335,337,350,366,368,392..396)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:380930"
     Site            order(301..303,312,335,350,368)
                     /site_type="other"
                     /note="putative polypeptide substrate binding site
                     [polypeptide binding]"
                     /db_xref="CDD:380930"
     Site            order(329,394,396,401)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:380930"
     CDS             1..406
                     /gene="SUV39H2"
                     /coded_by="XM_054057200.1:31..1251"
                     /db_xref="GeneID:104066427"
ORIGIN      
        1 magwqgawyv pclasletlq elcrkenlsc ksigitnrsl kryeveylcd ykveegteyy
       61 lvkwkgwpes sntwepqenl ncpvllqnfl sdkneflsrv regkalrvrn hvkalkpvva
      121 dyivkkakqr ialqrwkeel nrkknhkami lventvdleg ppldfyyine ykpapginvi
      181 ngittgcect dcptekccpk eagfilaynk rkklkiqpgl piyecnsfcr cgpdcpnriv
      241 qkgtpyslci frtnngrgwg vktlqkiktn sfvmeyvgev itseeaerrg qlydnqgnty
      301 lfdldydsde ftvdaarygn vshfvnhscd pnlqvfnvfi dnldlrlpri alfstrtika
      361 geeltfdyqm kgsmdltsds dglstsrkri rtvckcgavc crgyln
//
LOCUS       XP_053913190            3108 aa            linear   VRT 09-MAR-2023
DEFINITION  protein furry homolog isoform X1 [Cuculus canorus].
ACCESSION   XP_053913190
VERSION     XP_053913190.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057215.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3108
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3108
                     /product="protein furry homolog isoform X1"
                     /calculated_mol_wt=350045
     Region          262..768
                     /region_name="MOR2-PAG1_N"
                     /note="Cell morphogenesis N-terminal; pfam14222"
                     /db_xref="CDD:464107"
     Region          837..>1596
                     /region_name="MOR2-PAG1_mid"
                     /note="Cell morphogenesis central region; pfam14228"
                     /db_xref="CDD:433790"
     Region          2136..2389
                     /region_name="MOR2-PAG1_C"
                     /note="Cell morphogenesis C-terminal; pfam14225"
                     /db_xref="CDD:464109"
     Region          2413..3108
                     /region_name="Fry_C"
                     /note="Furry protein C-terminal; pfam19421"
                     /db_xref="CDD:466072"
     CDS             1..3108
                     /gene="FRY"
                     /coded_by="XM_054057215.1:20..9346"
                     /db_xref="GeneID:104064174"
ORIGIN      
        1 mqnsdlqeac kiasrllavn pslpelesyl sklhckikal kvittenchf rkrslrhltg
       61 cghyrtfevi spvgnvplgm nihwarevki lsqlevlrhs lkaflefrpa yslakslski
      121 tspvgngyik ppvppasgtq rekgppamlp isvdpdskpg eyvlkslfvn fttqaerkir
      181 iimaeplekp ltkslqrged pqfdqvissm sslseyclps ilrtlfdwyk rqngiedesh
      241 eyrprtstks ksdeqqrdyl merrdlaidf ifslvlievl kqiplhpvid slvhdvinla
      301 fkhfkykegy lgpntgnmhi vadlyaevig vlaqakfpav kkkfmaelke lrhkeqspyv
      361 vqsiislimg mkffrikmyp vedfeaslqf mqecahyfle vkdkdikhal aglfveilvp
      421 vaaavknevn vpclrnfves lydttlelss rkkhslalyp lvtcllcvsq kqfflnrwhi
      481 flnnclsnlk nkdpkmarva leslyrllwv ymirikcesn tatqsrliti vttlfpkgsr
      541 gvvprdmpln ifvkiiqfia qerldfamke iifdflcvgk pakafslnpe rmniglrafl
      601 viadslqqkd geppmpvtga vlpsgntlrv kktylsktlt eeeakmigms lyysqvrkav
      661 dnilrhldke vgrcmmltni qmlnkepedm itgerkpkid lfrtcvaaip rllpdgmskl
      721 elidllarls ihmddelrhi aqnslqgllv dfvdwredvl fgftnfllre vndmhhtlld
      781 tslklllqll tqwklvihtp gkaseqaktr stelipngss hriqserspy snvlhavegf
      841 alvllcsfqv atrklavlil reiralflal gqaedddrpm idvmdqlsss ilesfihvav
      901 sdsttiplth svdlqwlvew navlvnshyd vkspshvwif aqsvkdpwvl clfsflrqen
      961 lpkhcptals yawpyaftrl qlimplvdpn ipvnakktst assadnyvtl wrnylilcfg
     1021 vakpsimspg hlrastpeim attpdgtvny dnkaigtpsv gvllkqlvpl mrlesieite
     1081 slvlgfgrtn slvfrelvee lhplmkeale rrpenkkrre rrdllrlqll rifelladag
     1141 visdstngal erdtlalgal fleyvdltrm lleaendkev eilkdmrahf samianliqc
     1201 vpvhhrrflf pqqslrhhlf ilfsqwagpf simftpldry sdrnhqitry qycalkamsa
     1261 vlccgpvfdn vglspdgyly kwldnilacq dlrvhqlgce vvvlllelnp dqinlfnwai
     1321 drcytgsyql asgcfkaiat vcgsrnypfd ivtllnlvlf kasdtnreiy eismqlmqil
     1381 esklfvyskk vaeqrpgsil ygthgplppl ysvslallsy elarmypelt lplfsevsqr
     1441 fptthpngrq imltyllpwl hnielvdnrl llpgsspttp edelkdkdge itvtsglkgn
     1501 gwgspeatsl vlnnlmymta kygdeipgpe menvwnalan nekwsnnlri tlqflislcg
     1561 vssdtvllpy ikkvaiylcr nntiqtmeel lfelqqtdpv npivqhcdnp pfyrfaasnk
     1621 asaaasgtts ssntvvagqd nfpdgeenrv vketderfsn virahtrles rysnssggsy
     1681 dddkndpvsp ytswllnive tkqphplpmp ynggcwaplv dylpetitpr gplhrcniav
     1741 ifmtemvvdh svredwalhl plllhalflg ldhyrpevfe hskklllhll ialscnsnyq
     1801 aiasvllqtr emnetktltv qpaylpeyly tggfdflreh qsspvpdsgl sssstsssis
     1861 lggssgnlpq itqevedmdt aaetdekank lieflttraf gplwchedit pknqntksae
     1921 qltnflrhvv svfkdsksgf hleqhlseva lqtalssssr hyagrsfqif ralkqplsah
     1981 alsdllsrlv evigehgdei qgyvmeallt leaavdnlsd clknsdlltv lsrssspdlt
     2041 sstkltanrk stgqlnvnpt ssntataers rhqrsfsvpk kfgdvdkssd pprsatldri
     2101 qactqqglss ktrsssslkd sltdpshinn ptnllatifw vavalmesdf efeylmalrl
     2161 lnkllahlpl dkaenrekle klqgqlkwad fsglqqlllk gftsltttdl tlqlfslltp
     2221 vsrismvdss qaigfplnvl cllphliqhf dnpnqfckdi aeriaqvcle eknpklsnla
     2281 hvmtlykths ytrdcatwvn vvcrylheaf aditlsmvty laellekglp smqqsllqmi
     2341 ysllsymdls tipvkqfnme vlktiekyvq sihwrealni lklvvsrsas lvlpsyqhsd
     2401 lskmeihrvw nsaskelpgk tlefhfdise tpiigrryde lqsssgrdgk praravtrst
     2461 sstssgsnsn vlvpvswkrp qysqkrtkek lvhvlslcgq evglsknpsv ifsscgdldl
     2521 iehqtslvss edgtreqenm ddsnseqqfr vfrdfdfldv eledgegesm dnfnwgvrrr
     2581 sldsldkcdm qlleesqlsg stpslnkmnh edsdesseee dlttsqilen sdliitlsps
     2641 edtnhidsls tscdttsadp hhfnieassf dvslpdmnnl qvsegskvea vheeqdtavp
     2701 edellgstne lpgafecsds lsldmtetee kvdrleqfal asfgddrnas pppspffsai
     2761 laafqpaacd daeeawrshi nqlmcdsdgs cavytfhvfs slfkniqkrf cfltcdaasy
     2821 lgdnlrgigs kfvrssqmlt tcsecptlfv daetllscgl leklkfsvle lqeyldtynn
     2881 rkeatlswla nckatfaggs rdgvitcqpg dseekqmesl aqlelcqrly klhfqllllf
     2941 qsyckligqv hevssmpell nmsrelselk knlkdataai aaepltaese ptfnsteaai
     3001 qsmleclknn elvkavrqir ecrilwpndi fgsssddevq tllniyfrhq tlgqtgtyal
     3061 vgsnqsltei ctklmelnie irdmirraqs yrvintflpd ssvsgtsl
//
LOCUS       XP_053913199            3102 aa            linear   VRT 09-MAR-2023
DEFINITION  protein furry homolog isoform X2 [Cuculus canorus].
ACCESSION   XP_053913199
VERSION     XP_053913199.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057224.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3102
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3102
                     /product="protein furry homolog isoform X2"
                     /calculated_mol_wt=349385
     Region          262..768
                     /region_name="MOR2-PAG1_N"
                     /note="Cell morphogenesis N-terminal; pfam14222"
                     /db_xref="CDD:464107"
     Region          837..>1596
                     /region_name="MOR2-PAG1_mid"
                     /note="Cell morphogenesis central region; pfam14228"
                     /db_xref="CDD:433790"
     Region          2136..2389
                     /region_name="MOR2-PAG1_C"
                     /note="Cell morphogenesis C-terminal; pfam14225"
                     /db_xref="CDD:464109"
     Region          2413..3102
                     /region_name="Fry_C"
                     /note="Furry protein C-terminal; pfam19421"
                     /db_xref="CDD:466072"
     CDS             1..3102
                     /gene="FRY"
                     /coded_by="XM_054057224.1:20..9328"
                     /db_xref="GeneID:104064174"
ORIGIN      
        1 mqnsdlqeac kiasrllavn pslpelesyl sklhckikal kvittenchf rkrslrhltg
       61 cghyrtfevi spvgnvplgm nihwarevki lsqlevlrhs lkaflefrpa yslakslski
      121 tspvgngyik ppvppasgtq rekgppamlp isvdpdskpg eyvlkslfvn fttqaerkir
      181 iimaeplekp ltkslqrged pqfdqvissm sslseyclps ilrtlfdwyk rqngiedesh
      241 eyrprtstks ksdeqqrdyl merrdlaidf ifslvlievl kqiplhpvid slvhdvinla
      301 fkhfkykegy lgpntgnmhi vadlyaevig vlaqakfpav kkkfmaelke lrhkeqspyv
      361 vqsiislimg mkffrikmyp vedfeaslqf mqecahyfle vkdkdikhal aglfveilvp
      421 vaaavknevn vpclrnfves lydttlelss rkkhslalyp lvtcllcvsq kqfflnrwhi
      481 flnnclsnlk nkdpkmarva leslyrllwv ymirikcesn tatqsrliti vttlfpkgsr
      541 gvvprdmpln ifvkiiqfia qerldfamke iifdflcvgk pakafslnpe rmniglrafl
      601 viadslqqkd geppmpvtga vlpsgntlrv kktylsktlt eeeakmigms lyysqvrkav
      661 dnilrhldke vgrcmmltni qmlnkepedm itgerkpkid lfrtcvaaip rllpdgmskl
      721 elidllarls ihmddelrhi aqnslqgllv dfvdwredvl fgftnfllre vndmhhtlld
      781 tslklllqll tqwklvihtp gkaseqaktr stelipngss hriqserspy snvlhavegf
      841 alvllcsfqv atrklavlil reiralflal gqaedddrpm idvmdqlsss ilesfihvav
      901 sdsttiplth svdlqwlvew navlvnshyd vkspshvwif aqsvkdpwvl clfsflrqen
      961 lpkhcptals yawpyaftrl qlimplvdpn ipvnakktst assadnyvtl wrnylilcfg
     1021 vakpsimspg hlrastpeim attpdgtvny dnkaigtpsv gvllkqlvpl mrlesieite
     1081 slvlgfgrtn slvfrelvee lhplmkeale rrpenkkrre rrdllrlqll rifelladag
     1141 visdstngal erdtlalgal fleyvdltrm lleaendkev eilkdmrahf samianliqc
     1201 vpvhhrrflf pqqslrhhlf ilfsqwagpf simftpldry sdrnhqitry qycalkamsa
     1261 vlccgpvfdn vglspdgyly kwldnilacq dlrvhqlgce vvvlllelnp dqinlfnwai
     1321 drcytgsyql asgcfkaiat vcgsrnypfd ivtllnlvlf kasdtnreiy eismqlmqil
     1381 esklfvyskk vaeqrpgsil ygthgplppl ysvslallsy elarmypelt lplfsevsqr
     1441 fptthpngrq imltyllpwl hnielvdnrl llpgsspttp edelkdkdge itvtsglkgn
     1501 gwgspeatsl vlnnlmymta kygdeipgpe menvwnalan nekwsnnlri tlqflislcg
     1561 vssdtvllpy ikkvaiylcr nntiqtmeel lfelqqtdpv npivqhcdnp pfyrfaasnk
     1621 asaaasgtts ssntvvagqd nfpdgeenrv vketderfsn virahtrles rysnssggsy
     1681 dddkndpvsp ytswllnive tkqphplpmp ynggcwaplv dylpetitpr gplhrcniav
     1741 ifmtemvvdh svredwalhl plllhalflg ldhyrpevfe hskklllhll ialscnsnyq
     1801 aiasvllqtr emnetktltv qpaylpeyly tggfdflreh qsspvpdsgl sssstsssis
     1861 lggssgnlpq itqevedmdt aaetdekank lieflttraf gplwchedit pknqntksae
     1921 qltnflrhvv svfkdsksgf hleqhlseva lqtalssssr hyagrsfqif ralkqplsah
     1981 alsdllsrlv evigehgdei qgyvmeallt leaavdnlsd clknsdlltv lsrssspdlt
     2041 sstkltanrk stgqlnvnpt ssntataers rhqrsfsvpk kfgdvdkssd pprsatldri
     2101 qactqqglss ktrsssslkd sltdpshinn ptnllatifw vavalmesdf efeylmalrl
     2161 lnkllahlpl dkaenrekle klqgqlkwad fsglqqlllk gftsltttdl tlqlfslltp
     2221 vsrismvdss qaigfplnvl cllphliqhf dnpnqfckdi aeriaqvcle eknpklsnla
     2281 hvmtlykths ytrdcatwvn vvcrylheaf aditlsmvty laellekglp smqqsllqmi
     2341 ysllsymdls tipvkqfnme vlktiekyvq sihwrealni lklvvsrsas lvlpsyqhsd
     2401 lskmeihrvw nsaskelpgk tlefhfdise tpiigrryde lqsssgrdgk praravtrst
     2461 sstssgsnsn vlvpvswkrp qysqkrtkek lvhvlslcgq evglsknpsv ifsscgdldl
     2521 iehqtslvss edgtreqenm ddsnseqqfr vfrdfdfldv eledgegesm dnfnwgvrrr
     2581 sldsldkcdm qlleesqlsg stpslnkmnh edsdesseee dlttsqilen sdliitlsps
     2641 edtnhidsls tscdttsadp hhfnieassf dvslpdmnnl qvsegskvea vheeqdtavp
     2701 edellgstne lpgafecsds lsldmtetee kvdrleqfal asfgddrnas pppspffsai
     2761 laafqpaacd daeeawrshi nqlmcdsdgs cavytfhvfs slfkniqkrf cfltcdaasy
     2821 lgdnlrgigs kfvrssqmlt tcsecptlfv daetllscgl leklkfsvle lqeyldtynn
     2881 rkeatlswla nckatfaggs rdgvitcqpg dseekqlelc qrlyklhfql lllfqsyckl
     2941 igqvhevssm pellnmsrel selkknlkda taaiaaeplt aeseptfnst eaaiqsmlec
     3001 lknnelvkav rqirecrilw pndifgsssd devqtllniy frhqtlgqtg tyalvgsnqs
     3061 lteictklme lnieirdmir raqsyrvint flpdssvsgt sl
//
LOCUS       XP_053913208            3075 aa            linear   VRT 09-MAR-2023
DEFINITION  protein furry homolog isoform X3 [Cuculus canorus].
ACCESSION   XP_053913208
VERSION     XP_053913208.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057233.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3075
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3075
                     /product="protein furry homolog isoform X3"
                     /calculated_mol_wt=346246
     Region          229..735
                     /region_name="MOR2-PAG1_N"
                     /note="Cell morphogenesis N-terminal; pfam14222"
                     /db_xref="CDD:464107"
     Region          804..>1563
                     /region_name="MOR2-PAG1_mid"
                     /note="Cell morphogenesis central region; pfam14228"
                     /db_xref="CDD:433790"
     Region          2103..2356
                     /region_name="MOR2-PAG1_C"
                     /note="Cell morphogenesis C-terminal; pfam14225"
                     /db_xref="CDD:464109"
     Region          2380..3075
                     /region_name="Fry_C"
                     /note="Furry protein C-terminal; pfam19421"
                     /db_xref="CDD:466072"
     CDS             1..3075
                     /gene="FRY"
                     /coded_by="XM_054057233.1:20..9247"
                     /db_xref="GeneID:104064174"
ORIGIN      
        1 mqnsdlqeac kiasrllavn pslpelesyl sklhckikal kvittenchf rkrslrhltg
       61 cghyrtfevi spvgnvplgm nihwareasp vgngyikppv ppasgtqrek gppamlpisv
      121 dpdskpgeyv lkslfvnftt qaerkiriim aeplekpltk slqrgedpqf dqvissmssl
      181 seyclpsilr tlfdwykrqn giedesheyr prtstksksd eqqrdylmer rdlaidfifs
      241 lvlievlkqi plhpvidslv hdvinlafkh fkykegylgp ntgnmhivad lyaevigvla
      301 qakfpavkkk fmaelkelrh keqspyvvqs iislimgmkf frikmypved feaslqfmqe
      361 cahyflevkd kdikhalagl fveilvpvaa avknevnvpc lrnfveslyd ttlelssrkk
      421 hslalyplvt cllcvsqkqf flnrwhifln nclsnlknkd pkmarvales lyrllwvymi
      481 rikcesntat qsrlitivtt lfpkgsrgvv prdmplnifv kiiqfiaqer ldfamkeiif
      541 dflcvgkpak afslnpermn iglraflvia dslqqkdgep pmpvtgavlp sgntlrvkkt
      601 ylsktlteee akmigmslyy sqvrkavdni lrhldkevgr cmmltniqml nkepedmitg
      661 erkpkidlfr tcvaaiprll pdgmskleli dllarlsihm ddelrhiaqn slqgllvdfv
      721 dwredvlfgf tnfllrevnd mhhtlldtsl klllqlltqw klvihtpgka seqaktrste
      781 lipngsshri qserspysnv lhavegfalv llcsfqvatr klavlilrei ralflalgqa
      841 edddrpmidv mdqlsssile sfihvavsds ttiplthsvd lqwlvewnav lvnshydvks
      901 pshvwifaqs vkdpwvlclf sflrqenlpk hcptalsyaw pyaftrlqli mplvdpnipv
      961 nakktstass adnyvtlwrn ylilcfgvak psimspghlr astpeimatt pdgtvnydnk
     1021 aigtpsvgvl lkqlvplmrl esieiteslv lgfgrtnslv frelveelhp lmkealerrp
     1081 enkkrrerrd llrlqllrif elladagvis dstngalerd tlalgalfle yvdltrmlle
     1141 aendkeveil kdmrahfsam ianliqcvpv hhrrflfpqq slrhhlfilf sqwagpfsim
     1201 ftpldrysdr nhqitryqyc alkamsavlc cgpvfdnvgl spdgylykwl dnilacqdlr
     1261 vhqlgcevvv lllelnpdqi nlfnwaidrc ytgsyqlasg cfkaiatvcg srnypfdivt
     1321 llnlvlfkas dtnreiyeis mqlmqilesk lfvyskkvae qrpgsilygt hgplpplysv
     1381 slallsyela rmypeltlpl fsevsqrfpt thpngrqiml tyllpwlhni elvdnrlllp
     1441 gsspttpede lkdkdgeitv tsglkgngwg speatslvln nlmymtakyg deipgpemen
     1501 vwnalannek wsnnlritlq flislcgvss dtvllpyikk vaiylcrnnt iqtmeellfe
     1561 lqqtdpvnpi vqhcdnppfy rfaasnkasa aasgttsssn tvvagqdnfp dgeenrvvke
     1621 tderfsnvir ahtrlesrys nssggsyddd kndpvspyts wllnivetkq phplpmpyng
     1681 gcwaplvdyl petitprgpl hrcniavifm temvvdhsvr edwalhlpll lhalflgldh
     1741 yrpevfehsk klllhllial scnsnyqaia svllqtremn etktltvqpa ylpeylytgg
     1801 fdflrehqss pvpdsglsss stsssislgg ssgnlpqitq evedmdtaae tdekanklie
     1861 flttrafgpl wcheditpkn qntksaeqlt nflrhvvsvf kdsksgfhle qhlsevalqt
     1921 alssssrhya grsfqifral kqplsahals dllsrlvevi gehgdeiqgy vmealltlea
     1981 avdnlsdclk nsdlltvlsr ssspdltsst kltanrkstg qlnvnptssn tataersrhq
     2041 rsfsvpkkfg dvdkssdppr satldriqac tqqglssktr sssslkdslt dpshinnptn
     2101 llatifwvav almesdfefe ylmalrllnk llahlpldka enrekleklq gqlkwadfsg
     2161 lqqlllkgft sltttdltlq lfslltpvsr ismvdssqai gfplnvlcll phliqhfdnp
     2221 nqfckdiaer iaqvcleekn pklsnlahvm tlykthsytr dcatwvnvvc rylheafadi
     2281 tlsmvtylae llekglpsmq qsllqmiysl lsymdlstip vkqfnmevlk tiekyvqsih
     2341 wrealnilkl vvsrsaslvl psyqhsdlsk meihrvwnsa skelpgktle fhfdisetpi
     2401 igrrydelqs ssgrdgkpra ravtrstsst ssgsnsnvlv pvswkrpqys qkrtkeklvh
     2461 vlslcgqevg lsknpsvifs scgdldlieh qtslvssedg treqenmdds nseqqfrvfr
     2521 dfdfldvele dgegesmdnf nwgvrrrsld sldkcdmqll eesqlsgstp slnkmnheds
     2581 desseeedlt tsqilensdl iitlspsedt nhidslstsc dttsadphhf nieassfdvs
     2641 lpdmnnlqvs egskveavhe eqdtavpede llgstnelpg afecsdslsl dmteteekvd
     2701 rleqfalasf gddrnasppp spffsailaa fqpaacddae eawrshinql mcdsdgscav
     2761 ytfhvfsslf kniqkrfcfl tcdaasylgd nlrgigskfv rssqmlttcs ecptlfvdae
     2821 tllscgllek lkfsvlelqe yldtynnrke atlswlanck atfaggsrdg vitcqpgdse
     2881 ekqmeslaql elcqrlyklh fqllllfqsy ckligqvhev ssmpellnms relselkknl
     2941 kdataaiaae pltaeseptf nsteaaiqsm leclknnelv kavrqirecr ilwpndifgs
     3001 ssddevqtll niyfrhqtlg qtgtyalvgs nqslteictk lmelnieird mirraqsyrv
     3061 intflpdssv sgtsl
//
LOCUS       XP_053913217            3056 aa            linear   VRT 09-MAR-2023
DEFINITION  protein furry homolog isoform X4 [Cuculus canorus].
ACCESSION   XP_053913217
VERSION     XP_053913217.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057242.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3056
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3056
                     /product="protein furry homolog isoform X4"
                     /calculated_mol_wt=344493
     Region          210..716
                     /region_name="MOR2-PAG1_N"
                     /note="Cell morphogenesis N-terminal; pfam14222"
                     /db_xref="CDD:464107"
     Region          785..>1544
                     /region_name="MOR2-PAG1_mid"
                     /note="Cell morphogenesis central region; pfam14228"
                     /db_xref="CDD:433790"
     Region          2084..2337
                     /region_name="MOR2-PAG1_C"
                     /note="Cell morphogenesis C-terminal; pfam14225"
                     /db_xref="CDD:464109"
     Region          2361..3056
                     /region_name="Fry_C"
                     /note="Furry protein C-terminal; pfam19421"
                     /db_xref="CDD:466072"
     CDS             1..3056
                     /gene="FRY"
                     /coded_by="XM_054057242.1:1..9171"
                     /db_xref="GeneID:104064174"
ORIGIN      
        1 mavddsklyf rtksklnsyq thykstrrrs lppgillend lkgkyqrdlr nvepihprrs
       61 rkrpsifsas pvgngyikpp vppasgtqre kgppamlpis vdpdskpgey vlkslfvnft
      121 tqaerkirii maeplekplt kslqrgedpq fdqvissmss lseyclpsil rtlfdwykrq
      181 ngiedeshey rprtstksks deqqrdylme rrdlaidfif slvlievlkq iplhpvidsl
      241 vhdvinlafk hfkykegylg pntgnmhiva dlyaevigvl aqakfpavkk kfmaelkelr
      301 hkeqspyvvq siislimgmk ffrikmypve dfeaslqfmq ecahyflevk dkdikhalag
      361 lfveilvpva aavknevnvp clrnfvesly dttlelssrk khslalyplv tcllcvsqkq
      421 fflnrwhifl nnclsnlknk dpkmarvale slyrllwvym irikcesnta tqsrlitivt
      481 tlfpkgsrgv vprdmplnif vkiiqfiaqe rldfamkeii fdflcvgkpa kafslnperm
      541 niglraflvi adslqqkdge ppmpvtgavl psgntlrvkk tylsktltee eakmigmsly
      601 ysqvrkavdn ilrhldkevg rcmmltniqm lnkepedmit gerkpkidlf rtcvaaiprl
      661 lpdgmsklel idllarlsih mddelrhiaq nslqgllvdf vdwredvlfg ftnfllrevn
      721 dmhhtlldts lklllqlltq wklvihtpgk aseqaktrst elipngsshr iqserspysn
      781 vlhavegfal vllcsfqvat rklavlilre iralflalgq aedddrpmid vmdqlsssil
      841 esfihvavsd sttiplthsv dlqwlvewna vlvnshydvk spshvwifaq svkdpwvlcl
      901 fsflrqenlp khcptalsya wpyaftrlql implvdpnip vnakktstas sadnyvtlwr
      961 nylilcfgva kpsimspghl rastpeimat tpdgtvnydn kaigtpsvgv llkqlvplmr
     1021 lesieitesl vlgfgrtnsl vfrelveelh plmkealerr penkkrrerr dllrlqllri
     1081 felladagvi sdstngaler dtlalgalfl eyvdltrmll eaendkevei lkdmrahfsa
     1141 mianliqcvp vhhrrflfpq qslrhhlfil fsqwagpfsi mftpldrysd rnhqitryqy
     1201 calkamsavl ccgpvfdnvg lspdgylykw ldnilacqdl rvhqlgcevv vlllelnpdq
     1261 inlfnwaidr cytgsyqlas gcfkaiatvc gsrnypfdiv tllnlvlfka sdtnreiyei
     1321 smqlmqiles klfvyskkva eqrpgsilyg thgplpplys vslallsyel armypeltlp
     1381 lfsevsqrfp tthpngrqim ltyllpwlhn ielvdnrlll pgsspttped elkdkdgeit
     1441 vtsglkgngw gspeatslvl nnlmymtaky gdeipgpeme nvwnalanne kwsnnlritl
     1501 qflislcgvs sdtvllpyik kvaiylcrnn tiqtmeellf elqqtdpvnp ivqhcdnppf
     1561 yrfaasnkas aaasgttsss ntvvagqdnf pdgeenrvvk etderfsnvi rahtrlesry
     1621 snssggsydd dkndpvspyt swllnivetk qphplpmpyn ggcwaplvdy lpetitprgp
     1681 lhrcniavif mtemvvdhsv redwalhlpl llhalflgld hyrpevfehs kklllhllia
     1741 lscnsnyqai asvllqtrem netktltvqp aylpeylytg gfdflrehqs spvpdsglss
     1801 sstsssislg gssgnlpqit qevedmdtaa etdekankli eflttrafgp lwcheditpk
     1861 nqntksaeql tnflrhvvsv fkdsksgfhl eqhlsevalq talssssrhy agrsfqifra
     1921 lkqplsahal sdllsrlvev igehgdeiqg yvmealltle aavdnlsdcl knsdlltvls
     1981 rssspdltss tkltanrkst gqlnvnptss ntataersrh qrsfsvpkkf gdvdkssdpp
     2041 rsatldriqa ctqqglsskt rsssslkdsl tdpshinnpt nllatifwva valmesdfef
     2101 eylmalrlln kllahlpldk aenreklekl qgqlkwadfs glqqlllkgf tsltttdltl
     2161 qlfslltpvs rismvdssqa igfplnvlcl lphliqhfdn pnqfckdiae riaqvcleek
     2221 npklsnlahv mtlykthsyt rdcatwvnvv crylheafad itlsmvtyla ellekglpsm
     2281 qqsllqmiys llsymdlsti pvkqfnmevl ktiekyvqsi hwrealnilk lvvsrsaslv
     2341 lpsyqhsdls kmeihrvwns askelpgktl efhfdisetp iigrrydelq sssgrdgkpr
     2401 aravtrstss tssgsnsnvl vpvswkrpqy sqkrtkeklv hvlslcgqev glsknpsvif
     2461 sscgdldlie hqtslvssed gtreqenmdd snseqqfrvf rdfdfldvel edgegesmdn
     2521 fnwgvrrrsl dsldkcdmql leesqlsgst pslnkmnhed sdesseeedl ttsqilensd
     2581 liitlspsed tnhidslsts cdttsadphh fnieassfdv slpdmnnlqv segskveavh
     2641 eeqdtavped ellgstnelp gafecsdsls ldmteteekv drleqfalas fgddrnaspp
     2701 pspffsaila afqpaacdda eeawrshinq lmcdsdgsca vytfhvfssl fkniqkrfcf
     2761 ltcdaasylg dnlrgigskf vrssqmlttc secptlfvda etllscglle klkfsvlelq
     2821 eyldtynnrk eatlswlanc katfaggsrd gvitcqpgds eekqmeslaq lelcqrlykl
     2881 hfqllllfqs yckligqvhe vssmpellnm srelselkkn lkdataaiaa epltaesept
     2941 fnsteaaiqs mleclknnel vkavrqirec rilwpndifg sssddevqtl lniyfrhqtl
     3001 gqtgtyalvg snqslteict klmelnieir dmirraqsyr vintflpdss vsgtsl
//
LOCUS       XP_053913221            3011 aa            linear   VRT 09-MAR-2023
DEFINITION  protein furry homolog isoform X5 [Cuculus canorus].
ACCESSION   XP_053913221
VERSION     XP_053913221.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057246.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3011
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3011
                     /product="protein furry homolog isoform X5"
                     /calculated_mol_wt=339056
     Region          165..671
                     /region_name="MOR2-PAG1_N"
                     /note="Cell morphogenesis N-terminal; pfam14222"
                     /db_xref="CDD:464107"
     Region          740..>1499
                     /region_name="MOR2-PAG1_mid"
                     /note="Cell morphogenesis central region; pfam14228"
                     /db_xref="CDD:433790"
     Region          2039..2292
                     /region_name="MOR2-PAG1_C"
                     /note="Cell morphogenesis C-terminal; pfam14225"
                     /db_xref="CDD:464109"
     Region          2316..3011
                     /region_name="Fry_C"
                     /note="Furry protein C-terminal; pfam19421"
                     /db_xref="CDD:466072"
     CDS             1..3011
                     /gene="FRY"
                     /coded_by="XM_054057246.1:547..9582"
                     /db_xref="GeneID:104064174"
ORIGIN      
        1 masqqdsgff eisikyllks wsntspvgng yikppvppas gtqrekgppa mlpisvdpds
       61 kpgeyvlksl fvnfttqaer kiriimaepl ekpltkslqr gedpqfdqvi ssmsslseyc
      121 lpsilrtlfd wykrqngied esheyrprts tksksdeqqr dylmerrdla idfifslvli
      181 evlkqiplhp vidslvhdvi nlafkhfkyk egylgpntgn mhivadlyae vigvlaqakf
      241 pavkkkfmae lkelrhkeqs pyvvqsiisl imgmkffrik mypvedfeas lqfmqecahy
      301 flevkdkdik halaglfvei lvpvaaavkn evnvpclrnf veslydttle lssrkkhsla
      361 lyplvtcllc vsqkqfflnr whiflnncls nlknkdpkma rvaleslyrl lwvymirikc
      421 esntatqsrl itivttlfpk gsrgvvprdm plnifvkiiq fiaqerldfa mkeiifdflc
      481 vgkpakafsl npermniglr aflviadslq qkdgeppmpv tgavlpsgnt lrvkktylsk
      541 tlteeeakmi gmslyysqvr kavdnilrhl dkevgrcmml tniqmlnkep edmitgerkp
      601 kidlfrtcva aiprllpdgm sklelidlla rlsihmddel rhiaqnslqg llvdfvdwre
      661 dvlfgftnfl lrevndmhht lldtslklll qlltqwklvi htpgkaseqa ktrstelipn
      721 gsshriqser spysnvlhav egfalvllcs fqvatrklav lilreiralf lalgqaeddd
      781 rpmidvmdql sssilesfih vavsdsttip lthsvdlqwl vewnavlvns hydvkspshv
      841 wifaqsvkdp wvlclfsflr qenlpkhcpt alsyawpyaf trlqlimplv dpnipvnakk
      901 tstassadny vtlwrnylil cfgvakpsim spghlrastp eimattpdgt vnydnkaigt
      961 psvgvllkql vplmrlesie iteslvlgfg rtnslvfrel veelhplmke alerrpenkk
     1021 rrerrdllrl qllrifella dagvisdstn galerdtlal galfleyvdl trmlleaend
     1081 keveilkdmr ahfsamianl iqcvpvhhrr flfpqqslrh hlfilfsqwa gpfsimftpl
     1141 drysdrnhqi tryqycalka msavlccgpv fdnvglspdg ylykwldnil acqdlrvhql
     1201 gcevvvllle lnpdqinlfn waidrcytgs yqlasgcfka iatvcgsrny pfdivtllnl
     1261 vlfkasdtnr eiyeismqlm qilesklfvy skkvaeqrpg silygthgpl pplysvslal
     1321 lsyelarmyp eltlplfsev sqrfptthpn grqimltyll pwlhnielvd nrlllpgssp
     1381 ttpedelkdk dgeitvtsgl kgngwgspea tslvlnnlmy mtakygdeip gpemenvwna
     1441 lannekwsnn lritlqflis lcgvssdtvl lpyikkvaiy lcrnntiqtm eellfelqqt
     1501 dpvnpivqhc dnppfyrfaa snkasaaasg ttsssntvva gqdnfpdgee nrvvketder
     1561 fsnvirahtr lesrysnssg gsydddkndp vspytswlln ivetkqphpl pmpynggcwa
     1621 plvdylpeti tprgplhrcn iavifmtemv vdhsvredwa lhlplllhal flgldhyrpe
     1681 vfehskklll hllialscns nyqaiasvll qtremnetkt ltvqpaylpe ylytggfdfl
     1741 rehqsspvpd sglsssstss sislggssgn lpqitqeved mdtaaetdek ankliefltt
     1801 rafgplwche ditpknqntk saeqltnflr hvvsvfkdsk sgfhleqhls evalqtalss
     1861 ssrhyagrsf qifralkqpl sahalsdlls rlvevigehg deiqgyvmea lltleaavdn
     1921 lsdclknsdl ltvlsrsssp dltsstklta nrkstgqlnv nptssntata ersrhqrsfs
     1981 vpkkfgdvdk ssdpprsatl driqactqqg lssktrssss lkdsltdpsh innptnllat
     2041 ifwvavalme sdfefeylma lrllnkllah lpldkaenre kleklqgqlk wadfsglqql
     2101 llkgftsltt tdltlqlfsl ltpvsrismv dssqaigfpl nvlcllphli qhfdnpnqfc
     2161 kdiaeriaqv cleeknpkls nlahvmtlyk thsytrdcat wvnvvcrylh eafaditlsm
     2221 vtylaellek glpsmqqsll qmiysllsym dlstipvkqf nmevlktiek yvqsihwrea
     2281 lnilklvvsr saslvlpsyq hsdlskmeih rvwnsaskel pgktlefhfd isetpiigrr
     2341 ydelqsssgr dgkpraravt rstsstssgs nsnvlvpvsw krpqysqkrt keklvhvlsl
     2401 cgqevglskn psvifsscgd ldliehqtsl vssedgtreq enmddsnseq qfrvfrdfdf
     2461 ldveledgeg esmdnfnwgv rrrsldsldk cdmqlleesq lsgstpslnk mnhedsdess
     2521 eeedlttsqi lensdliitl spsedtnhid slstscdtts adphhfniea ssfdvslpdm
     2581 nnlqvsegsk veavheeqdt avpedellgs tnelpgafec sdslsldmte teekvdrleq
     2641 falasfgddr naspppspff sailaafqpa acddaeeawr shinqlmcds dgscavytfh
     2701 vfsslfkniq krfcfltcda asylgdnlrg igskfvrssq mlttcsecpt lfvdaetlls
     2761 cglleklkfs vlelqeyldt ynnrkeatls wlanckatfa ggsrdgvitc qpgdseekqm
     2821 eslaqlelcq rlyklhfqll llfqsyckli gqvhevssmp ellnmsrels elkknlkdat
     2881 aaiaaeplta eseptfnste aaiqsmlecl knnelvkavr qirecrilwp ndifgsssdd
     2941 evqtllniyf rhqtlgqtgt yalvgsnqsl teictklmel nieirdmirr aqsyrvintf
     3001 lpdssvsgts l
//
LOCUS       XP_053913231            3008 aa            linear   VRT 09-MAR-2023
DEFINITION  protein furry homolog isoform X6 [Cuculus canorus].
ACCESSION   XP_053913231
VERSION     XP_053913231.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057256.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3008
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3008
                     /product="protein furry homolog isoform X6"
                     /calculated_mol_wt=338570
     Region          162..668
                     /region_name="MOR2-PAG1_N"
                     /note="Cell morphogenesis N-terminal; pfam14222"
                     /db_xref="CDD:464107"
     Region          737..>1496
                     /region_name="MOR2-PAG1_mid"
                     /note="Cell morphogenesis central region; pfam14228"
                     /db_xref="CDD:433790"
     Region          2036..2289
                     /region_name="MOR2-PAG1_C"
                     /note="Cell morphogenesis C-terminal; pfam14225"
                     /db_xref="CDD:464109"
     Region          2313..3008
                     /region_name="Fry_C"
                     /note="Furry protein C-terminal; pfam19421"
                     /db_xref="CDD:466072"
     CDS             1..3008
                     /gene="FRY"
                     /coded_by="XM_054057256.1:82..9108"
                     /db_xref="GeneID:104064174"
ORIGIN      
        1 mditvacwrk ssvigfikgl aspvgngyik ppvppasgtq rekgppamlp isvdpdskpg
       61 eyvlkslfvn fttqaerkir iimaeplekp ltkslqrged pqfdqvissm sslseyclps
      121 ilrtlfdwyk rqngiedesh eyrprtstks ksdeqqrdyl merrdlaidf ifslvlievl
      181 kqiplhpvid slvhdvinla fkhfkykegy lgpntgnmhi vadlyaevig vlaqakfpav
      241 kkkfmaelke lrhkeqspyv vqsiislimg mkffrikmyp vedfeaslqf mqecahyfle
      301 vkdkdikhal aglfveilvp vaaavknevn vpclrnfves lydttlelss rkkhslalyp
      361 lvtcllcvsq kqfflnrwhi flnnclsnlk nkdpkmarva leslyrllwv ymirikcesn
      421 tatqsrliti vttlfpkgsr gvvprdmpln ifvkiiqfia qerldfamke iifdflcvgk
      481 pakafslnpe rmniglrafl viadslqqkd geppmpvtga vlpsgntlrv kktylsktlt
      541 eeeakmigms lyysqvrkav dnilrhldke vgrcmmltni qmlnkepedm itgerkpkid
      601 lfrtcvaaip rllpdgmskl elidllarls ihmddelrhi aqnslqgllv dfvdwredvl
      661 fgftnfllre vndmhhtlld tslklllqll tqwklvihtp gkaseqaktr stelipngss
      721 hriqserspy snvlhavegf alvllcsfqv atrklavlil reiralflal gqaedddrpm
      781 idvmdqlsss ilesfihvav sdsttiplth svdlqwlvew navlvnshyd vkspshvwif
      841 aqsvkdpwvl clfsflrqen lpkhcptals yawpyaftrl qlimplvdpn ipvnakktst
      901 assadnyvtl wrnylilcfg vakpsimspg hlrastpeim attpdgtvny dnkaigtpsv
      961 gvllkqlvpl mrlesieite slvlgfgrtn slvfrelvee lhplmkeale rrpenkkrre
     1021 rrdllrlqll rifelladag visdstngal erdtlalgal fleyvdltrm lleaendkev
     1081 eilkdmrahf samianliqc vpvhhrrflf pqqslrhhlf ilfsqwagpf simftpldry
     1141 sdrnhqitry qycalkamsa vlccgpvfdn vglspdgyly kwldnilacq dlrvhqlgce
     1201 vvvlllelnp dqinlfnwai drcytgsyql asgcfkaiat vcgsrnypfd ivtllnlvlf
     1261 kasdtnreiy eismqlmqil esklfvyskk vaeqrpgsil ygthgplppl ysvslallsy
     1321 elarmypelt lplfsevsqr fptthpngrq imltyllpwl hnielvdnrl llpgsspttp
     1381 edelkdkdge itvtsglkgn gwgspeatsl vlnnlmymta kygdeipgpe menvwnalan
     1441 nekwsnnlri tlqflislcg vssdtvllpy ikkvaiylcr nntiqtmeel lfelqqtdpv
     1501 npivqhcdnp pfyrfaasnk asaaasgtts ssntvvagqd nfpdgeenrv vketderfsn
     1561 virahtrles rysnssggsy dddkndpvsp ytswllnive tkqphplpmp ynggcwaplv
     1621 dylpetitpr gplhrcniav ifmtemvvdh svredwalhl plllhalflg ldhyrpevfe
     1681 hskklllhll ialscnsnyq aiasvllqtr emnetktltv qpaylpeyly tggfdflreh
     1741 qsspvpdsgl sssstsssis lggssgnlpq itqevedmdt aaetdekank lieflttraf
     1801 gplwchedit pknqntksae qltnflrhvv svfkdsksgf hleqhlseva lqtalssssr
     1861 hyagrsfqif ralkqplsah alsdllsrlv evigehgdei qgyvmeallt leaavdnlsd
     1921 clknsdlltv lsrssspdlt sstkltanrk stgqlnvnpt ssntataers rhqrsfsvpk
     1981 kfgdvdkssd pprsatldri qactqqglss ktrsssslkd sltdpshinn ptnllatifw
     2041 vavalmesdf efeylmalrl lnkllahlpl dkaenrekle klqgqlkwad fsglqqlllk
     2101 gftsltttdl tlqlfslltp vsrismvdss qaigfplnvl cllphliqhf dnpnqfckdi
     2161 aeriaqvcle eknpklsnla hvmtlykths ytrdcatwvn vvcrylheaf aditlsmvty
     2221 laellekglp smqqsllqmi ysllsymdls tipvkqfnme vlktiekyvq sihwrealni
     2281 lklvvsrsas lvlpsyqhsd lskmeihrvw nsaskelpgk tlefhfdise tpiigrryde
     2341 lqsssgrdgk praravtrst sstssgsnsn vlvpvswkrp qysqkrtkek lvhvlslcgq
     2401 evglsknpsv ifsscgdldl iehqtslvss edgtreqenm ddsnseqqfr vfrdfdfldv
     2461 eledgegesm dnfnwgvrrr sldsldkcdm qlleesqlsg stpslnkmnh edsdesseee
     2521 dlttsqilen sdliitlsps edtnhidsls tscdttsadp hhfnieassf dvslpdmnnl
     2581 qvsegskvea vheeqdtavp edellgstne lpgafecsds lsldmtetee kvdrleqfal
     2641 asfgddrnas pppspffsai laafqpaacd daeeawrshi nqlmcdsdgs cavytfhvfs
     2701 slfkniqkrf cfltcdaasy lgdnlrgigs kfvrssqmlt tcsecptlfv daetllscgl
     2761 leklkfsvle lqeyldtynn rkeatlswla nckatfaggs rdgvitcqpg dseekqmesl
     2821 aqlelcqrly klhfqllllf qsyckligqv hevssmpell nmsrelselk knlkdataai
     2881 aaepltaese ptfnsteaai qsmleclknn elvkavrqir ecrilwpndi fgsssddevq
     2941 tllniyfrhq tlgqtgtyal vgsnqsltei ctklmelnie irdmirraqs yrvintflpd
     3001 ssvsgtsl
//
LOCUS       XP_009564772            3005 aa            linear   VRT 09-MAR-2023
DEFINITION  protein furry homolog isoform X7 [Cuculus canorus].
ACCESSION   XP_009564772
VERSION     XP_009564772.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566477.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564772.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3005
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3005
                     /product="protein furry homolog isoform X7"
                     /calculated_mol_wt=338396
     Region          165..671
                     /region_name="MOR2-PAG1_N"
                     /note="Cell morphogenesis N-terminal; pfam14222"
                     /db_xref="CDD:464107"
     Region          740..>1499
                     /region_name="MOR2-PAG1_mid"
                     /note="Cell morphogenesis central region; pfam14228"
                     /db_xref="CDD:433790"
     Region          2039..2292
                     /region_name="MOR2-PAG1_C"
                     /note="Cell morphogenesis C-terminal; pfam14225"
                     /db_xref="CDD:464109"
     Region          2316..3005
                     /region_name="Fry_C"
                     /note="Furry protein C-terminal; pfam19421"
                     /db_xref="CDD:466072"
     CDS             1..3005
                     /gene="FRY"
                     /coded_by="XM_009566477.2:547..9564"
                     /db_xref="GeneID:104064174"
ORIGIN      
        1 masqqdsgff eisikyllks wsntspvgng yikppvppas gtqrekgppa mlpisvdpds
       61 kpgeyvlksl fvnfttqaer kiriimaepl ekpltkslqr gedpqfdqvi ssmsslseyc
      121 lpsilrtlfd wykrqngied esheyrprts tksksdeqqr dylmerrdla idfifslvli
      181 evlkqiplhp vidslvhdvi nlafkhfkyk egylgpntgn mhivadlyae vigvlaqakf
      241 pavkkkfmae lkelrhkeqs pyvvqsiisl imgmkffrik mypvedfeas lqfmqecahy
      301 flevkdkdik halaglfvei lvpvaaavkn evnvpclrnf veslydttle lssrkkhsla
      361 lyplvtcllc vsqkqfflnr whiflnncls nlknkdpkma rvaleslyrl lwvymirikc
      421 esntatqsrl itivttlfpk gsrgvvprdm plnifvkiiq fiaqerldfa mkeiifdflc
      481 vgkpakafsl npermniglr aflviadslq qkdgeppmpv tgavlpsgnt lrvkktylsk
      541 tlteeeakmi gmslyysqvr kavdnilrhl dkevgrcmml tniqmlnkep edmitgerkp
      601 kidlfrtcva aiprllpdgm sklelidlla rlsihmddel rhiaqnslqg llvdfvdwre
      661 dvlfgftnfl lrevndmhht lldtslklll qlltqwklvi htpgkaseqa ktrstelipn
      721 gsshriqser spysnvlhav egfalvllcs fqvatrklav lilreiralf lalgqaeddd
      781 rpmidvmdql sssilesfih vavsdsttip lthsvdlqwl vewnavlvns hydvkspshv
      841 wifaqsvkdp wvlclfsflr qenlpkhcpt alsyawpyaf trlqlimplv dpnipvnakk
      901 tstassadny vtlwrnylil cfgvakpsim spghlrastp eimattpdgt vnydnkaigt
      961 psvgvllkql vplmrlesie iteslvlgfg rtnslvfrel veelhplmke alerrpenkk
     1021 rrerrdllrl qllrifella dagvisdstn galerdtlal galfleyvdl trmlleaend
     1081 keveilkdmr ahfsamianl iqcvpvhhrr flfpqqslrh hlfilfsqwa gpfsimftpl
     1141 drysdrnhqi tryqycalka msavlccgpv fdnvglspdg ylykwldnil acqdlrvhql
     1201 gcevvvllle lnpdqinlfn waidrcytgs yqlasgcfka iatvcgsrny pfdivtllnl
     1261 vlfkasdtnr eiyeismqlm qilesklfvy skkvaeqrpg silygthgpl pplysvslal
     1321 lsyelarmyp eltlplfsev sqrfptthpn grqimltyll pwlhnielvd nrlllpgssp
     1381 ttpedelkdk dgeitvtsgl kgngwgspea tslvlnnlmy mtakygdeip gpemenvwna
     1441 lannekwsnn lritlqflis lcgvssdtvl lpyikkvaiy lcrnntiqtm eellfelqqt
     1501 dpvnpivqhc dnppfyrfaa snkasaaasg ttsssntvva gqdnfpdgee nrvvketder
     1561 fsnvirahtr lesrysnssg gsydddkndp vspytswlln ivetkqphpl pmpynggcwa
     1621 plvdylpeti tprgplhrcn iavifmtemv vdhsvredwa lhlplllhal flgldhyrpe
     1681 vfehskklll hllialscns nyqaiasvll qtremnetkt ltvqpaylpe ylytggfdfl
     1741 rehqsspvpd sglsssstss sislggssgn lpqitqeved mdtaaetdek ankliefltt
     1801 rafgplwche ditpknqntk saeqltnflr hvvsvfkdsk sgfhleqhls evalqtalss
     1861 ssrhyagrsf qifralkqpl sahalsdlls rlvevigehg deiqgyvmea lltleaavdn
     1921 lsdclknsdl ltvlsrsssp dltsstklta nrkstgqlnv nptssntata ersrhqrsfs
     1981 vpkkfgdvdk ssdpprsatl driqactqqg lssktrssss lkdsltdpsh innptnllat
     2041 ifwvavalme sdfefeylma lrllnkllah lpldkaenre kleklqgqlk wadfsglqql
     2101 llkgftsltt tdltlqlfsl ltpvsrismv dssqaigfpl nvlcllphli qhfdnpnqfc
     2161 kdiaeriaqv cleeknpkls nlahvmtlyk thsytrdcat wvnvvcrylh eafaditlsm
     2221 vtylaellek glpsmqqsll qmiysllsym dlstipvkqf nmevlktiek yvqsihwrea
     2281 lnilklvvsr saslvlpsyq hsdlskmeih rvwnsaskel pgktlefhfd isetpiigrr
     2341 ydelqsssgr dgkpraravt rstsstssgs nsnvlvpvsw krpqysqkrt keklvhvlsl
     2401 cgqevglskn psvifsscgd ldliehqtsl vssedgtreq enmddsnseq qfrvfrdfdf
     2461 ldveledgeg esmdnfnwgv rrrsldsldk cdmqlleesq lsgstpslnk mnhedsdess
     2521 eeedlttsqi lensdliitl spsedtnhid slstscdtts adphhfniea ssfdvslpdm
     2581 nnlqvsegsk veavheeqdt avpedellgs tnelpgafec sdslsldmte teekvdrleq
     2641 falasfgddr naspppspff sailaafqpa acddaeeawr shinqlmcds dgscavytfh
     2701 vfsslfkniq krfcfltcda asylgdnlrg igskfvrssq mlttcsecpt lfvdaetlls
     2761 cglleklkfs vlelqeyldt ynnrkeatls wlanckatfa ggsrdgvitc qpgdseekql
     2821 elcqrlyklh fqllllfqsy ckligqvhev ssmpellnms relselkknl kdataaiaae
     2881 pltaeseptf nsteaaiqsm leclknnelv kavrqirecr ilwpndifgs ssddevqtll
     2941 niyfrhqtlg qtgtyalvgs nqslteictk lmelnieird mirraqsyrv intflpdssv
     3001 sgtsl
//
LOCUS       XP_053913250            2961 aa            linear   VRT 09-MAR-2023
DEFINITION  protein furry homolog isoform X8 [Cuculus canorus].
ACCESSION   XP_053913250
VERSION     XP_053913250.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057275.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2961
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2961
                     /product="protein furry homolog isoform X8"
                     /calculated_mol_wt=333709
     Region          115..621
                     /region_name="MOR2-PAG1_N"
                     /note="Cell morphogenesis N-terminal; pfam14222"
                     /db_xref="CDD:464107"
     Region          690..>1449
                     /region_name="MOR2-PAG1_mid"
                     /note="Cell morphogenesis central region; pfam14228"
                     /db_xref="CDD:433790"
     Region          1989..2242
                     /region_name="MOR2-PAG1_C"
                     /note="Cell morphogenesis C-terminal; pfam14225"
                     /db_xref="CDD:464109"
     Region          2266..2961
                     /region_name="Fry_C"
                     /note="Furry protein C-terminal; pfam19421"
                     /db_xref="CDD:466072"
     CDS             1..2961
                     /gene="FRY"
                     /coded_by="XM_054057275.1:221..9106"
                     /db_xref="GeneID:104064174"
ORIGIN      
        1 mlpisvdpds kpgeyvlksl fvnfttqaer kiriimaepl ekpltkslqr gedpqfdqvi
       61 ssmsslseyc lpsilrtlfd wykrqngied esheyrprts tksksdeqqr dylmerrdla
      121 idfifslvli evlkqiplhp vidslvhdvi nlafkhfkyk egylgpntgn mhivadlyae
      181 vigvlaqakf pavkkkfmae lkelrhkeqs pyvvqsiisl imgmkffrik mypvedfeas
      241 lqfmqecahy flevkdkdik halaglfvei lvpvaaavkn evnvpclrnf veslydttle
      301 lssrkkhsla lyplvtcllc vsqkqfflnr whiflnncls nlknkdpkma rvaleslyrl
      361 lwvymirikc esntatqsrl itivttlfpk gsrgvvprdm plnifvkiiq fiaqerldfa
      421 mkeiifdflc vgkpakafsl npermniglr aflviadslq qkdgeppmpv tgavlpsgnt
      481 lrvkktylsk tlteeeakmi gmslyysqvr kavdnilrhl dkevgrcmml tniqmlnkep
      541 edmitgerkp kidlfrtcva aiprllpdgm sklelidlla rlsihmddel rhiaqnslqg
      601 llvdfvdwre dvlfgftnfl lrevndmhht lldtslklll qlltqwklvi htpgkaseqa
      661 ktrstelipn gsshriqser spysnvlhav egfalvllcs fqvatrklav lilreiralf
      721 lalgqaeddd rpmidvmdql sssilesfih vavsdsttip lthsvdlqwl vewnavlvns
      781 hydvkspshv wifaqsvkdp wvlclfsflr qenlpkhcpt alsyawpyaf trlqlimplv
      841 dpnipvnakk tstassadny vtlwrnylil cfgvakpsim spghlrastp eimattpdgt
      901 vnydnkaigt psvgvllkql vplmrlesie iteslvlgfg rtnslvfrel veelhplmke
      961 alerrpenkk rrerrdllrl qllrifella dagvisdstn galerdtlal galfleyvdl
     1021 trmlleaend keveilkdmr ahfsamianl iqcvpvhhrr flfpqqslrh hlfilfsqwa
     1081 gpfsimftpl drysdrnhqi tryqycalka msavlccgpv fdnvglspdg ylykwldnil
     1141 acqdlrvhql gcevvvllle lnpdqinlfn waidrcytgs yqlasgcfka iatvcgsrny
     1201 pfdivtllnl vlfkasdtnr eiyeismqlm qilesklfvy skkvaeqrpg silygthgpl
     1261 pplysvslal lsyelarmyp eltlplfsev sqrfptthpn grqimltyll pwlhnielvd
     1321 nrlllpgssp ttpedelkdk dgeitvtsgl kgngwgspea tslvlnnlmy mtakygdeip
     1381 gpemenvwna lannekwsnn lritlqflis lcgvssdtvl lpyikkvaiy lcrnntiqtm
     1441 eellfelqqt dpvnpivqhc dnppfyrfaa snkasaaasg ttsssntvva gqdnfpdgee
     1501 nrvvketder fsnvirahtr lesrysnssg gsydddkndp vspytswlln ivetkqphpl
     1561 pmpynggcwa plvdylpeti tprgplhrcn iavifmtemv vdhsvredwa lhlplllhal
     1621 flgldhyrpe vfehskklll hllialscns nyqaiasvll qtremnetkt ltvqpaylpe
     1681 ylytggfdfl rehqsspvpd sglsssstss sislggssgn lpqitqeved mdtaaetdek
     1741 ankliefltt rafgplwche ditpknqntk saeqltnflr hvvsvfkdsk sgfhleqhls
     1801 evalqtalss ssrhyagrsf qifralkqpl sahalsdlls rlvevigehg deiqgyvmea
     1861 lltleaavdn lsdclknsdl ltvlsrsssp dltsstklta nrkstgqlnv nptssntata
     1921 ersrhqrsfs vpkkfgdvdk ssdpprsatl driqactqqg lssktrssss lkdsltdpsh
     1981 innptnllat ifwvavalme sdfefeylma lrllnkllah lpldkaenre kleklqgqlk
     2041 wadfsglqql llkgftsltt tdltlqlfsl ltpvsrismv dssqaigfpl nvlcllphli
     2101 qhfdnpnqfc kdiaeriaqv cleeknpkls nlahvmtlyk thsytrdcat wvnvvcrylh
     2161 eafaditlsm vtylaellek glpsmqqsll qmiysllsym dlstipvkqf nmevlktiek
     2221 yvqsihwrea lnilklvvsr saslvlpsyq hsdlskmeih rvwnsaskel pgktlefhfd
     2281 isetpiigrr ydelqsssgr dgkpraravt rstsstssgs nsnvlvpvsw krpqysqkrt
     2341 keklvhvlsl cgqevglskn psvifsscgd ldliehqtsl vssedgtreq enmddsnseq
     2401 qfrvfrdfdf ldveledgeg esmdnfnwgv rrrsldsldk cdmqlleesq lsgstpslnk
     2461 mnhedsdess eeedlttsqi lensdliitl spsedtnhid slstscdtts adphhfniea
     2521 ssfdvslpdm nnlqvsegsk veavheeqdt avpedellgs tnelpgafec sdslsldmte
     2581 teekvdrleq falasfgddr naspppspff sailaafqpa acddaeeawr shinqlmcds
     2641 dgscavytfh vfsslfkniq krfcfltcda asylgdnlrg igskfvrssq mlttcsecpt
     2701 lfvdaetlls cglleklkfs vlelqeyldt ynnrkeatls wlanckatfa ggsrdgvitc
     2761 qpgdseekqm eslaqlelcq rlyklhfqll llfqsyckli gqvhevssmp ellnmsrels
     2821 elkknlkdat aaiaaeplta eseptfnste aaiqsmlecl knnelvkavr qirecrilwp
     2881 ndifgsssdd evqtllniyf rhqtlgqtgt yalvgsnqsl teictklmel nieirdmirr
     2941 aqsyrvintf lpdssvsgts l
//
LOCUS       XP_053913258            2645 aa            linear   VRT 09-MAR-2023
DEFINITION  protein furry homolog isoform X9 [Cuculus canorus].
ACCESSION   XP_053913258
VERSION     XP_053913258.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057283.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2645
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2645
                     /product="protein furry homolog isoform X9"
                     /calculated_mol_wt=296875
     Region          <29..305
                     /region_name="MOR2-PAG1_N"
                     /note="Cell morphogenesis N-terminal; pfam14222"
                     /db_xref="CDD:464107"
     Region          374..>1133
                     /region_name="MOR2-PAG1_mid"
                     /note="Cell morphogenesis central region; pfam14228"
                     /db_xref="CDD:433790"
     Region          1673..1926
                     /region_name="MOR2-PAG1_C"
                     /note="Cell morphogenesis C-terminal; pfam14225"
                     /db_xref="CDD:464109"
     Region          1950..2645
                     /region_name="Fry_C"
                     /note="Furry protein C-terminal; pfam19421"
                     /db_xref="CDD:466072"
     CDS             1..2645
                     /gene="FRY"
                     /coded_by="XM_054057283.1:1118..9055"
                     /db_xref="GeneID:104064174"
ORIGIN      
        1 misssatqal itftqlatvc cflesfgnkd pkmarvales lyrllwvymi rikcesntat
       61 qsrlitivtt lfpkgsrgvv prdmplnifv kiiqfiaqer ldfamkeiif dflcvgkpak
      121 afslnpermn iglraflvia dslqqkdgep pmpvtgavlp sgntlrvkkt ylsktlteee
      181 akmigmslyy sqvrkavdni lrhldkevgr cmmltniqml nkepedmitg erkpkidlfr
      241 tcvaaiprll pdgmskleli dllarlsihm ddelrhiaqn slqgllvdfv dwredvlfgf
      301 tnfllrevnd mhhtlldtsl klllqlltqw klvihtpgka seqaktrste lipngsshri
      361 qserspysnv lhavegfalv llcsfqvatr klavlilrei ralflalgqa edddrpmidv
      421 mdqlsssile sfihvavsds ttiplthsvd lqwlvewnav lvnshydvks pshvwifaqs
      481 vkdpwvlclf sflrqenlpk hcptalsyaw pyaftrlqli mplvdpnipv nakktstass
      541 adnyvtlwrn ylilcfgvak psimspghlr astpeimatt pdgtvnydnk aigtpsvgvl
      601 lkqlvplmrl esieiteslv lgfgrtnslv frelveelhp lmkealerrp enkkrrerrd
      661 llrlqllrif elladagvis dstngalerd tlalgalfle yvdltrmlle aendkeveil
      721 kdmrahfsam ianliqcvpv hhrrflfpqq slrhhlfilf sqwagpfsim ftpldrysdr
      781 nhqitryqyc alkamsavlc cgpvfdnvgl spdgylykwl dnilacqdlr vhqlgcevvv
      841 lllelnpdqi nlfnwaidrc ytgsyqlasg cfkaiatvcg srnypfdivt llnlvlfkas
      901 dtnreiyeis mqlmqilesk lfvyskkvae qrpgsilygt hgplpplysv slallsyela
      961 rmypeltlpl fsevsqrfpt thpngrqiml tyllpwlhni elvdnrlllp gsspttpede
     1021 lkdkdgeitv tsglkgngwg speatslvln nlmymtakyg deipgpemen vwnalannek
     1081 wsnnlritlq flislcgvss dtvllpyikk vaiylcrnnt iqtmeellfe lqqtdpvnpi
     1141 vqhcdnppfy rfaasnkasa aasgttsssn tvvagqdnfp dgeenrvvke tderfsnvir
     1201 ahtrlesrys nssggsyddd kndpvspyts wllnivetkq phplpmpyng gcwaplvdyl
     1261 petitprgpl hrcniavifm temvvdhsvr edwalhlpll lhalflgldh yrpevfehsk
     1321 klllhllial scnsnyqaia svllqtremn etktltvqpa ylpeylytgg fdflrehqss
     1381 pvpdsglsss stsssislgg ssgnlpqitq evedmdtaae tdekanklie flttrafgpl
     1441 wcheditpkn qntksaeqlt nflrhvvsvf kdsksgfhle qhlsevalqt alssssrhya
     1501 grsfqifral kqplsahals dllsrlvevi gehgdeiqgy vmealltlea avdnlsdclk
     1561 nsdlltvlsr ssspdltsst kltanrkstg qlnvnptssn tataersrhq rsfsvpkkfg
     1621 dvdkssdppr satldriqac tqqglssktr sssslkdslt dpshinnptn llatifwvav
     1681 almesdfefe ylmalrllnk llahlpldka enrekleklq gqlkwadfsg lqqlllkgft
     1741 sltttdltlq lfslltpvsr ismvdssqai gfplnvlcll phliqhfdnp nqfckdiaer
     1801 iaqvcleekn pklsnlahvm tlykthsytr dcatwvnvvc rylheafadi tlsmvtylae
     1861 llekglpsmq qsllqmiysl lsymdlstip vkqfnmevlk tiekyvqsih wrealnilkl
     1921 vvsrsaslvl psyqhsdlsk meihrvwnsa skelpgktle fhfdisetpi igrrydelqs
     1981 ssgrdgkpra ravtrstsst ssgsnsnvlv pvswkrpqys qkrtkeklvh vlslcgqevg
     2041 lsknpsvifs scgdldlieh qtslvssedg treqenmdds nseqqfrvfr dfdfldvele
     2101 dgegesmdnf nwgvrrrsld sldkcdmqll eesqlsgstp slnkmnheds desseeedlt
     2161 tsqilensdl iitlspsedt nhidslstsc dttsadphhf nieassfdvs lpdmnnlqvs
     2221 egskveavhe eqdtavpede llgstnelpg afecsdslsl dmteteekvd rleqfalasf
     2281 gddrnasppp spffsailaa fqpaacddae eawrshinql mcdsdgscav ytfhvfsslf
     2341 kniqkrfcfl tcdaasylgd nlrgigskfv rssqmlttcs ecptlfvdae tllscgllek
     2401 lkfsvlelqe yldtynnrke atlswlanck atfaggsrdg vitcqpgdse ekqmeslaql
     2461 elcqrlyklh fqllllfqsy ckligqvhev ssmpellnms relselkknl kdataaiaae
     2521 pltaeseptf nsteaaiqsm leclknnelv kavrqirecr ilwpndifgs ssddevqtll
     2581 niyfrhqtlg qtgtyalvgs nqslteictk lmelnieird mirraqsyrv intflpdssv
     2641 sgtsl
//
LOCUS       XP_053913268            1395 aa            linear   VRT 09-MAR-2023
DEFINITION  microtubule-associated tumor suppressor candidate 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053913268
VERSION     XP_053913268.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057293.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1395
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1395
                     /product="microtubule-associated tumor suppressor
                     candidate 2 isoform X1"
                     /calculated_mol_wt=154264
     Region          1016..>1370
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..1395
                     /gene="MTUS2"
                     /coded_by="XM_054057293.1:506..4693"
                     /db_xref="GeneID:104064168"
ORIGIN      
        1 msapviphks cyarlqdnhs eiknnnetiv smgdtnanqi varvrttegd vkkcdltdes
       61 gnihpggsek vsdlnteqnk lltfkdsrtc htsvqesklp sttsremgkd crtseakeip
      121 rhirisrgqs lsnlksstnd anleviskad vditqnfakg kmprtvever ikrlslgrps
      181 kfspqsetca kdclgrvsck rllsasldsi drshhligna eksqktstdh flgmvfhpld
      241 ntseentmfy skpstsgnkk iskpenvpnv nvestlhtch sqhlasksea qlgqgdkskk
      301 lelktvpslq skntcqqkve rimlaeflgc qnnentaaqe qkgsgsdask fqashfqdic
      361 nkvedplscq vvmcpddkll rddvttsgeg rgsndsdnga tsrvgeeyft dkemetifpl
      421 tcdskssgkv tprknenlre adtgcaeavg eqvsvthnin lpdskplkvn entlmlvkgs
      481 tegaavlacd lsdqhgtrga etvsnqqpdn hdsdaetssf svptkktsna qkhppdease
      541 nykvsgkvda flcvptpvcp gaaldvnsqp alsssnlkdl ytlhidklsp tsvlppiest
      601 qllnispkvp iiktacsnai pkpilvqskg sladkadvdn dcsekqeesi emkpaiprpk
      661 pvrpkiityi rrnprsieql dpsfapaglp fgtpacgmpi steqkasngg eakppsilyd
      721 kfkpelqkpr lfssglvvsg irppghhfss isekflqevg erpakdefcp ppythyevpp
      781 nfyrsamilk pqlglgavsr lpsaksrili asqrssgscl hqqgeiasap slyhpdasvd
      841 lkkgscpsta ksnlpkpcqs glrppgysrl paaklaafgf vrsssvssvs snqsndsaqs
      901 dqsrttnrss fgneeqttpk tsasskdvpk gsskstmqgs ssiaiprrsl lpapktatap
      961 aglkkevqkd qdanrpavss pkrsavtatk lhspghpkqr patpkngfsp kpgesrdaek
     1021 qlvqrlkekc deqsrqlssi reelkrascg fdvfaittqh ffkqnekslv kiqelgvela
     1081 kirdetalna akwkqlqsek eelercfeke vkelhkkqqe dlqmveqwlq eeyntkkesl
     1141 qeqhrlqleq vksqhqdqve dikavheaav lqlennhivt itelqdendc kikdlnaahk
     1201 lekaqleenf eklrlslqdq idtltfqnqs lkakadrfee alkktteeql kmvqapylhl
     1261 ekdlkslkhi lemknyqihq qeikiielek qaeknlklee kitmlqqqne elrarieqnt
     1321 iitrqlseen anlqeyveke veekkrlsrt neellwklqe gdatspkkla ptlptslyqc
     1381 psgdtspakv rtlrr
//
LOCUS       XP_053913279            1395 aa            linear   VRT 09-MAR-2023
DEFINITION  microtubule-associated tumor suppressor candidate 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053913279
VERSION     XP_053913279.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057304.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1395
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1395
                     /product="microtubule-associated tumor suppressor
                     candidate 2 isoform X1"
                     /calculated_mol_wt=154264
     Region          1016..>1370
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..1395
                     /gene="MTUS2"
                     /coded_by="XM_054057304.1:694..4881"
                     /db_xref="GeneID:104064168"
ORIGIN      
        1 msapviphks cyarlqdnhs eiknnnetiv smgdtnanqi varvrttegd vkkcdltdes
       61 gnihpggsek vsdlnteqnk lltfkdsrtc htsvqesklp sttsremgkd crtseakeip
      121 rhirisrgqs lsnlksstnd anleviskad vditqnfakg kmprtvever ikrlslgrps
      181 kfspqsetca kdclgrvsck rllsasldsi drshhligna eksqktstdh flgmvfhpld
      241 ntseentmfy skpstsgnkk iskpenvpnv nvestlhtch sqhlasksea qlgqgdkskk
      301 lelktvpslq skntcqqkve rimlaeflgc qnnentaaqe qkgsgsdask fqashfqdic
      361 nkvedplscq vvmcpddkll rddvttsgeg rgsndsdnga tsrvgeeyft dkemetifpl
      421 tcdskssgkv tprknenlre adtgcaeavg eqvsvthnin lpdskplkvn entlmlvkgs
      481 tegaavlacd lsdqhgtrga etvsnqqpdn hdsdaetssf svptkktsna qkhppdease
      541 nykvsgkvda flcvptpvcp gaaldvnsqp alsssnlkdl ytlhidklsp tsvlppiest
      601 qllnispkvp iiktacsnai pkpilvqskg sladkadvdn dcsekqeesi emkpaiprpk
      661 pvrpkiityi rrnprsieql dpsfapaglp fgtpacgmpi steqkasngg eakppsilyd
      721 kfkpelqkpr lfssglvvsg irppghhfss isekflqevg erpakdefcp ppythyevpp
      781 nfyrsamilk pqlglgavsr lpsaksrili asqrssgscl hqqgeiasap slyhpdasvd
      841 lkkgscpsta ksnlpkpcqs glrppgysrl paaklaafgf vrsssvssvs snqsndsaqs
      901 dqsrttnrss fgneeqttpk tsasskdvpk gsskstmqgs ssiaiprrsl lpapktatap
      961 aglkkevqkd qdanrpavss pkrsavtatk lhspghpkqr patpkngfsp kpgesrdaek
     1021 qlvqrlkekc deqsrqlssi reelkrascg fdvfaittqh ffkqnekslv kiqelgvela
     1081 kirdetalna akwkqlqsek eelercfeke vkelhkkqqe dlqmveqwlq eeyntkkesl
     1141 qeqhrlqleq vksqhqdqve dikavheaav lqlennhivt itelqdendc kikdlnaahk
     1201 lekaqleenf eklrlslqdq idtltfqnqs lkakadrfee alkktteeql kmvqapylhl
     1261 ekdlkslkhi lemknyqihq qeikiielek qaeknlklee kitmlqqqne elrarieqnt
     1321 iitrqlseen anlqeyveke veekkrlsrt neellwklqe gdatspkkla ptlptslyqc
     1381 psgdtspakv rtlrr
//
LOCUS       XP_053913289            1395 aa            linear   VRT 09-MAR-2023
DEFINITION  microtubule-associated tumor suppressor candidate 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053913289
VERSION     XP_053913289.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057314.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1395
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1395
                     /product="microtubule-associated tumor suppressor
                     candidate 2 isoform X1"
                     /calculated_mol_wt=154264
     Region          1016..>1370
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..1395
                     /gene="MTUS2"
                     /coded_by="XM_054057314.1:1098..5285"
                     /db_xref="GeneID:104064168"
ORIGIN      
        1 msapviphks cyarlqdnhs eiknnnetiv smgdtnanqi varvrttegd vkkcdltdes
       61 gnihpggsek vsdlnteqnk lltfkdsrtc htsvqesklp sttsremgkd crtseakeip
      121 rhirisrgqs lsnlksstnd anleviskad vditqnfakg kmprtvever ikrlslgrps
      181 kfspqsetca kdclgrvsck rllsasldsi drshhligna eksqktstdh flgmvfhpld
      241 ntseentmfy skpstsgnkk iskpenvpnv nvestlhtch sqhlasksea qlgqgdkskk
      301 lelktvpslq skntcqqkve rimlaeflgc qnnentaaqe qkgsgsdask fqashfqdic
      361 nkvedplscq vvmcpddkll rddvttsgeg rgsndsdnga tsrvgeeyft dkemetifpl
      421 tcdskssgkv tprknenlre adtgcaeavg eqvsvthnin lpdskplkvn entlmlvkgs
      481 tegaavlacd lsdqhgtrga etvsnqqpdn hdsdaetssf svptkktsna qkhppdease
      541 nykvsgkvda flcvptpvcp gaaldvnsqp alsssnlkdl ytlhidklsp tsvlppiest
      601 qllnispkvp iiktacsnai pkpilvqskg sladkadvdn dcsekqeesi emkpaiprpk
      661 pvrpkiityi rrnprsieql dpsfapaglp fgtpacgmpi steqkasngg eakppsilyd
      721 kfkpelqkpr lfssglvvsg irppghhfss isekflqevg erpakdefcp ppythyevpp
      781 nfyrsamilk pqlglgavsr lpsaksrili asqrssgscl hqqgeiasap slyhpdasvd
      841 lkkgscpsta ksnlpkpcqs glrppgysrl paaklaafgf vrsssvssvs snqsndsaqs
      901 dqsrttnrss fgneeqttpk tsasskdvpk gsskstmqgs ssiaiprrsl lpapktatap
      961 aglkkevqkd qdanrpavss pkrsavtatk lhspghpkqr patpkngfsp kpgesrdaek
     1021 qlvqrlkekc deqsrqlssi reelkrascg fdvfaittqh ffkqnekslv kiqelgvela
     1081 kirdetalna akwkqlqsek eelercfeke vkelhkkqqe dlqmveqwlq eeyntkkesl
     1141 qeqhrlqleq vksqhqdqve dikavheaav lqlennhivt itelqdendc kikdlnaahk
     1201 lekaqleenf eklrlslqdq idtltfqnqs lkakadrfee alkktteeql kmvqapylhl
     1261 ekdlkslkhi lemknyqihq qeikiielek qaeknlklee kitmlqqqne elrarieqnt
     1321 iitrqlseen anlqeyveke veekkrlsrt neellwklqe gdatspkkla ptlptslyqc
     1381 psgdtspakv rtlrr
//
LOCUS       XP_053913298            1395 aa            linear   VRT 09-MAR-2023
DEFINITION  microtubule-associated tumor suppressor candidate 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053913298
VERSION     XP_053913298.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057323.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1395
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1395
                     /product="microtubule-associated tumor suppressor
                     candidate 2 isoform X1"
                     /calculated_mol_wt=154264
     Region          1016..>1370
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..1395
                     /gene="MTUS2"
                     /coded_by="XM_054057323.1:1286..5473"
                     /db_xref="GeneID:104064168"
ORIGIN      
        1 msapviphks cyarlqdnhs eiknnnetiv smgdtnanqi varvrttegd vkkcdltdes
       61 gnihpggsek vsdlnteqnk lltfkdsrtc htsvqesklp sttsremgkd crtseakeip
      121 rhirisrgqs lsnlksstnd anleviskad vditqnfakg kmprtvever ikrlslgrps
      181 kfspqsetca kdclgrvsck rllsasldsi drshhligna eksqktstdh flgmvfhpld
      241 ntseentmfy skpstsgnkk iskpenvpnv nvestlhtch sqhlasksea qlgqgdkskk
      301 lelktvpslq skntcqqkve rimlaeflgc qnnentaaqe qkgsgsdask fqashfqdic
      361 nkvedplscq vvmcpddkll rddvttsgeg rgsndsdnga tsrvgeeyft dkemetifpl
      421 tcdskssgkv tprknenlre adtgcaeavg eqvsvthnin lpdskplkvn entlmlvkgs
      481 tegaavlacd lsdqhgtrga etvsnqqpdn hdsdaetssf svptkktsna qkhppdease
      541 nykvsgkvda flcvptpvcp gaaldvnsqp alsssnlkdl ytlhidklsp tsvlppiest
      601 qllnispkvp iiktacsnai pkpilvqskg sladkadvdn dcsekqeesi emkpaiprpk
      661 pvrpkiityi rrnprsieql dpsfapaglp fgtpacgmpi steqkasngg eakppsilyd
      721 kfkpelqkpr lfssglvvsg irppghhfss isekflqevg erpakdefcp ppythyevpp
      781 nfyrsamilk pqlglgavsr lpsaksrili asqrssgscl hqqgeiasap slyhpdasvd
      841 lkkgscpsta ksnlpkpcqs glrppgysrl paaklaafgf vrsssvssvs snqsndsaqs
      901 dqsrttnrss fgneeqttpk tsasskdvpk gsskstmqgs ssiaiprrsl lpapktatap
      961 aglkkevqkd qdanrpavss pkrsavtatk lhspghpkqr patpkngfsp kpgesrdaek
     1021 qlvqrlkekc deqsrqlssi reelkrascg fdvfaittqh ffkqnekslv kiqelgvela
     1081 kirdetalna akwkqlqsek eelercfeke vkelhkkqqe dlqmveqwlq eeyntkkesl
     1141 qeqhrlqleq vksqhqdqve dikavheaav lqlennhivt itelqdendc kikdlnaahk
     1201 lekaqleenf eklrlslqdq idtltfqnqs lkakadrfee alkktteeql kmvqapylhl
     1261 ekdlkslkhi lemknyqihq qeikiielek qaeknlklee kitmlqqqne elrarieqnt
     1321 iitrqlseen anlqeyveke veekkrlsrt neellwklqe gdatspkkla ptlptslyqc
     1381 psgdtspakv rtlrr
//
LOCUS       XP_053913301            1395 aa            linear   VRT 09-MAR-2023
DEFINITION  microtubule-associated tumor suppressor candidate 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053913301
VERSION     XP_053913301.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057326.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1395
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1395
                     /product="microtubule-associated tumor suppressor
                     candidate 2 isoform X1"
                     /calculated_mol_wt=154264
     Region          1016..>1370
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..1395
                     /gene="MTUS2"
                     /coded_by="XM_054057326.1:397..4584"
                     /db_xref="GeneID:104064168"
ORIGIN      
        1 msapviphks cyarlqdnhs eiknnnetiv smgdtnanqi varvrttegd vkkcdltdes
       61 gnihpggsek vsdlnteqnk lltfkdsrtc htsvqesklp sttsremgkd crtseakeip
      121 rhirisrgqs lsnlksstnd anleviskad vditqnfakg kmprtvever ikrlslgrps
      181 kfspqsetca kdclgrvsck rllsasldsi drshhligna eksqktstdh flgmvfhpld
      241 ntseentmfy skpstsgnkk iskpenvpnv nvestlhtch sqhlasksea qlgqgdkskk
      301 lelktvpslq skntcqqkve rimlaeflgc qnnentaaqe qkgsgsdask fqashfqdic
      361 nkvedplscq vvmcpddkll rddvttsgeg rgsndsdnga tsrvgeeyft dkemetifpl
      421 tcdskssgkv tprknenlre adtgcaeavg eqvsvthnin lpdskplkvn entlmlvkgs
      481 tegaavlacd lsdqhgtrga etvsnqqpdn hdsdaetssf svptkktsna qkhppdease
      541 nykvsgkvda flcvptpvcp gaaldvnsqp alsssnlkdl ytlhidklsp tsvlppiest
      601 qllnispkvp iiktacsnai pkpilvqskg sladkadvdn dcsekqeesi emkpaiprpk
      661 pvrpkiityi rrnprsieql dpsfapaglp fgtpacgmpi steqkasngg eakppsilyd
      721 kfkpelqkpr lfssglvvsg irppghhfss isekflqevg erpakdefcp ppythyevpp
      781 nfyrsamilk pqlglgavsr lpsaksrili asqrssgscl hqqgeiasap slyhpdasvd
      841 lkkgscpsta ksnlpkpcqs glrppgysrl paaklaafgf vrsssvssvs snqsndsaqs
      901 dqsrttnrss fgneeqttpk tsasskdvpk gsskstmqgs ssiaiprrsl lpapktatap
      961 aglkkevqkd qdanrpavss pkrsavtatk lhspghpkqr patpkngfsp kpgesrdaek
     1021 qlvqrlkekc deqsrqlssi reelkrascg fdvfaittqh ffkqnekslv kiqelgvela
     1081 kirdetalna akwkqlqsek eelercfeke vkelhkkqqe dlqmveqwlq eeyntkkesl
     1141 qeqhrlqleq vksqhqdqve dikavheaav lqlennhivt itelqdendc kikdlnaahk
     1201 lekaqleenf eklrlslqdq idtltfqnqs lkakadrfee alkktteeql kmvqapylhl
     1261 ekdlkslkhi lemknyqihq qeikiielek qaeknlklee kitmlqqqne elrarieqnt
     1321 iitrqlseen anlqeyveke veekkrlsrt neellwklqe gdatspkkla ptlptslyqc
     1381 psgdtspakv rtlrr
//
LOCUS       XP_053913315            1355 aa            linear   VRT 09-MAR-2023
DEFINITION  microtubule-associated tumor suppressor candidate 2 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053913315
VERSION     XP_053913315.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057340.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1355
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1355
                     /product="microtubule-associated tumor suppressor
                     candidate 2 isoform X2"
                     /calculated_mol_wt=149380
     Region          1016..>1323
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..1355
                     /gene="MTUS2"
                     /coded_by="XM_054057340.1:506..4573"
                     /db_xref="GeneID:104064168"
ORIGIN      
        1 msapviphks cyarlqdnhs eiknnnetiv smgdtnanqi varvrttegd vkkcdltdes
       61 gnihpggsek vsdlnteqnk lltfkdsrtc htsvqesklp sttsremgkd crtseakeip
      121 rhirisrgqs lsnlksstnd anleviskad vditqnfakg kmprtvever ikrlslgrps
      181 kfspqsetca kdclgrvsck rllsasldsi drshhligna eksqktstdh flgmvfhpld
      241 ntseentmfy skpstsgnkk iskpenvpnv nvestlhtch sqhlasksea qlgqgdkskk
      301 lelktvpslq skntcqqkve rimlaeflgc qnnentaaqe qkgsgsdask fqashfqdic
      361 nkvedplscq vvmcpddkll rddvttsgeg rgsndsdnga tsrvgeeyft dkemetifpl
      421 tcdskssgkv tprknenlre adtgcaeavg eqvsvthnin lpdskplkvn entlmlvkgs
      481 tegaavlacd lsdqhgtrga etvsnqqpdn hdsdaetssf svptkktsna qkhppdease
      541 nykvsgkvda flcvptpvcp gaaldvnsqp alsssnlkdl ytlhidklsp tsvlppiest
      601 qllnispkvp iiktacsnai pkpilvqskg sladkadvdn dcsekqeesi emkpaiprpk
      661 pvrpkiityi rrnprsieql dpsfapaglp fgtpacgmpi steqkasngg eakppsilyd
      721 kfkpelqkpr lfssglvvsg irppghhfss isekflqevg erpakdefcp ppythyevpp
      781 nfyrsamilk pqlglgavsr lpsaksrili asqrssgscl hqqgeiasap slyhpdasvd
      841 lkkgscpsta ksnlpkpcqs glrppgysrl paaklaafgf vrsssvssvs snqsndsaqs
      901 dqsrttnrss fgneeqttpk tsasskdvpk gsskstmqgs ssiaiprrsl lpapktatap
      961 aglkkevqkd qdanrpavss pkrsavtatk lhspghpkqr patpkngfsp kpgesrdaek
     1021 qlvqrlkekc deqsrqlssi reelkrascg fdvfaittqh ffkqnekslv kiqelgvela
     1081 kirdetalna akwkqlqsek eelercfeke vkelhkkqqe dlqmveqwlq eeyntkkesl
     1141 qeqhrlqleq vksqhqdqve dikavheaav lqlennhivt itelqdendc kikdlnaahk
     1201 lekaqleenf eklrlslqdq idtltfqnqs lkakadrfee alkktteeql kaeknlklee
     1261 kitmlqqqne elrarieqnt iitrqlseen anlqeyveke veekkrlsrt neellwklqe
     1321 gdatspkkla ptlptslyqc psgdtspakv rtlrr
//
LOCUS       XP_053913329             622 aa            linear   VRT 09-MAR-2023
DEFINITION  high affinity cationic amino acid transporter 1 [Cuculus canorus].
ACCESSION   XP_053913329
VERSION     XP_053913329.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057354.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..622
                     /product="high affinity cationic amino acid transporter 1"
                     /calculated_mol_wt=67554
     Region          4..601
                     /region_name="2A0303"
                     /note="cationic amino acid transport permease; TIGR00906"
                     /db_xref="CDD:273330"
     CDS             1..622
                     /gene="SLC7A1"
                     /coded_by="XM_054057354.1:293..2161"
                     /db_xref="GeneID:104064169"
ORIGIN      
        1 mecqkiinfg nqlirrknvd ctredsrlsr clntfdlval gvgstlgagv yvlagavare
       61 nagpaivisf liaalasvla glcygefgar vpktgsayly syvtvgelwa fitgwnlils
      121 yvigtssvar awsatfdeii gqhiekfckk ymtmeapgvl akypdifavv iiviltglli
      181 vgvkesalvn kvftcinilv lgfvmvsgfv kgsvknwqlt eqdiynisiy gvnqtqeekl
      241 ygvggfmpyg wkgvlsgaat cfyafvgfdc iattgeevkn pqkaipigiv asllicfvay
      301 fgvsaaltlm mpyykldtns plpnafkyvd wdganyavav gslcalstsl lgsmfpmpri
      361 iyamaedgll fkflarvnek rktpiiatvs sgavaalmaf lfdlkdlvdl msigtllays
      421 lvaacvlvlr yqpeqpnlay qmartteetd nnesvstses qagflpeeee kcslkailcp
      481 pnsdpskfsg svvnvsafii gflivgscil talepsvlik tvwiiaailv lvvsfiiwkq
      541 pesktklsfk vpllpllpvl sifvnvylmm qldigtwirf aiwmllgfii yfsygiwhsv
      601 eatyaasada ernidaglds ck
//
LOCUS       XP_053913339             622 aa            linear   VRT 09-MAR-2023
DEFINITION  high affinity cationic amino acid transporter 1 [Cuculus canorus].
ACCESSION   XP_053913339
VERSION     XP_053913339.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057364.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..622
                     /product="high affinity cationic amino acid transporter 1"
                     /calculated_mol_wt=67554
     Region          4..601
                     /region_name="2A0303"
                     /note="cationic amino acid transport permease; TIGR00906"
                     /db_xref="CDD:273330"
     CDS             1..622
                     /gene="SLC7A1"
                     /coded_by="XM_054057364.1:135..2003"
                     /db_xref="GeneID:104064169"
ORIGIN      
        1 mecqkiinfg nqlirrknvd ctredsrlsr clntfdlval gvgstlgagv yvlagavare
       61 nagpaivisf liaalasvla glcygefgar vpktgsayly syvtvgelwa fitgwnlils
      121 yvigtssvar awsatfdeii gqhiekfckk ymtmeapgvl akypdifavv iiviltglli
      181 vgvkesalvn kvftcinilv lgfvmvsgfv kgsvknwqlt eqdiynisiy gvnqtqeekl
      241 ygvggfmpyg wkgvlsgaat cfyafvgfdc iattgeevkn pqkaipigiv asllicfvay
      301 fgvsaaltlm mpyykldtns plpnafkyvd wdganyavav gslcalstsl lgsmfpmpri
      361 iyamaedgll fkflarvnek rktpiiatvs sgavaalmaf lfdlkdlvdl msigtllays
      421 lvaacvlvlr yqpeqpnlay qmartteetd nnesvstses qagflpeeee kcslkailcp
      481 pnsdpskfsg svvnvsafii gflivgscil talepsvlik tvwiiaailv lvvsfiiwkq
      541 pesktklsfk vpllpllpvl sifvnvylmm qldigtwirf aiwmllgfii yfsygiwhsv
      601 eatyaasada ernidaglds ck
//
LOCUS       XP_053913348             622 aa            linear   VRT 09-MAR-2023
DEFINITION  high affinity cationic amino acid transporter 1 [Cuculus canorus].
ACCESSION   XP_053913348
VERSION     XP_053913348.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057373.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..622
                     /product="high affinity cationic amino acid transporter 1"
                     /calculated_mol_wt=67554
     Region          4..601
                     /region_name="2A0303"
                     /note="cationic amino acid transport permease; TIGR00906"
                     /db_xref="CDD:273330"
     CDS             1..622
                     /gene="SLC7A1"
                     /coded_by="XM_054057373.1:289..2157"
                     /db_xref="GeneID:104064169"
ORIGIN      
        1 mecqkiinfg nqlirrknvd ctredsrlsr clntfdlval gvgstlgagv yvlagavare
       61 nagpaivisf liaalasvla glcygefgar vpktgsayly syvtvgelwa fitgwnlils
      121 yvigtssvar awsatfdeii gqhiekfckk ymtmeapgvl akypdifavv iiviltglli
      181 vgvkesalvn kvftcinilv lgfvmvsgfv kgsvknwqlt eqdiynisiy gvnqtqeekl
      241 ygvggfmpyg wkgvlsgaat cfyafvgfdc iattgeevkn pqkaipigiv asllicfvay
      301 fgvsaaltlm mpyykldtns plpnafkyvd wdganyavav gslcalstsl lgsmfpmpri
      361 iyamaedgll fkflarvnek rktpiiatvs sgavaalmaf lfdlkdlvdl msigtllays
      421 lvaacvlvlr yqpeqpnlay qmartteetd nnesvstses qagflpeeee kcslkailcp
      481 pnsdpskfsg svvnvsafii gflivgscil talepsvlik tvwiiaailv lvvsfiiwkq
      541 pesktklsfk vpllpllpvl sifvnvylmm qldigtwirf aiwmllgfii yfsygiwhsv
      601 eatyaasada ernidaglds ck
//
LOCUS       XP_053913358             622 aa            linear   VRT 09-MAR-2023
DEFINITION  high affinity cationic amino acid transporter 1 [Cuculus canorus].
ACCESSION   XP_053913358
VERSION     XP_053913358.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057383.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..622
                     /product="high affinity cationic amino acid transporter 1"
                     /calculated_mol_wt=67554
     Region          4..601
                     /region_name="2A0303"
                     /note="cationic amino acid transport permease; TIGR00906"
                     /db_xref="CDD:273330"
     CDS             1..622
                     /gene="SLC7A1"
                     /coded_by="XM_054057383.1:155..2023"
                     /db_xref="GeneID:104064169"
ORIGIN      
        1 mecqkiinfg nqlirrknvd ctredsrlsr clntfdlval gvgstlgagv yvlagavare
       61 nagpaivisf liaalasvla glcygefgar vpktgsayly syvtvgelwa fitgwnlils
      121 yvigtssvar awsatfdeii gqhiekfckk ymtmeapgvl akypdifavv iiviltglli
      181 vgvkesalvn kvftcinilv lgfvmvsgfv kgsvknwqlt eqdiynisiy gvnqtqeekl
      241 ygvggfmpyg wkgvlsgaat cfyafvgfdc iattgeevkn pqkaipigiv asllicfvay
      301 fgvsaaltlm mpyykldtns plpnafkyvd wdganyavav gslcalstsl lgsmfpmpri
      361 iyamaedgll fkflarvnek rktpiiatvs sgavaalmaf lfdlkdlvdl msigtllays
      421 lvaacvlvlr yqpeqpnlay qmartteetd nnesvstses qagflpeeee kcslkailcp
      481 pnsdpskfsg svvnvsafii gflivgscil talepsvlik tvwiiaailv lvvsfiiwkq
      541 pesktklsfk vpllpllpvl sifvnvylmm qldigtwirf aiwmllgfii yfsygiwhsv
      601 eatyaasada ernidaglds ck
//
LOCUS       XP_053913364             622 aa            linear   VRT 09-MAR-2023
DEFINITION  high affinity cationic amino acid transporter 1 [Cuculus canorus].
ACCESSION   XP_053913364
VERSION     XP_053913364.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057389.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..622
                     /product="high affinity cationic amino acid transporter 1"
                     /calculated_mol_wt=67554
     Region          4..601
                     /region_name="2A0303"
                     /note="cationic amino acid transport permease; TIGR00906"
                     /db_xref="CDD:273330"
     CDS             1..622
                     /gene="SLC7A1"
                     /coded_by="XM_054057389.1:37..1905"
                     /db_xref="GeneID:104064169"
ORIGIN      
        1 mecqkiinfg nqlirrknvd ctredsrlsr clntfdlval gvgstlgagv yvlagavare
       61 nagpaivisf liaalasvla glcygefgar vpktgsayly syvtvgelwa fitgwnlils
      121 yvigtssvar awsatfdeii gqhiekfckk ymtmeapgvl akypdifavv iiviltglli
      181 vgvkesalvn kvftcinilv lgfvmvsgfv kgsvknwqlt eqdiynisiy gvnqtqeekl
      241 ygvggfmpyg wkgvlsgaat cfyafvgfdc iattgeevkn pqkaipigiv asllicfvay
      301 fgvsaaltlm mpyykldtns plpnafkyvd wdganyavav gslcalstsl lgsmfpmpri
      361 iyamaedgll fkflarvnek rktpiiatvs sgavaalmaf lfdlkdlvdl msigtllays
      421 lvaacvlvlr yqpeqpnlay qmartteetd nnesvstses qagflpeeee kcslkailcp
      481 pnsdpskfsg svvnvsafii gflivgscil talepsvlik tvwiiaailv lvvsfiiwkq
      541 pesktklsfk vpllpllpvl sifvnvylmm qldigtwirf aiwmllgfii yfsygiwhsv
      601 eatyaasada ernidaglds ck
//
LOCUS       XP_009562752             683 aa            linear   VRT 09-MAR-2023
DEFINITION  pseudouridylate synthase PUS7L isoform X1 [Cuculus canorus].
ACCESSION   XP_009562752
VERSION     XP_009562752.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009564457.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009562752.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..683
                     /product="pseudouridylate synthase PUS7L isoform X1"
                     /calculated_mol_wt=77168
     Region          285..679
                     /region_name="PseudoU_synth_ScPUS7"
                     /note="Pseudouridine synthase, TruD family; cd02576"
                     /db_xref="CDD:211341"
     Site            order(319..322,672)
                     /site_type="active"
                     /note="probable active site [active]"
                     /db_xref="CDD:211341"
     CDS             1..683
                     /gene="PUS7L"
                     /coded_by="XM_009564457.2:185..2236"
                     /db_xref="GeneID:104062405"
ORIGIN      
        1 mlrsfsyltd htgfcgtikn spsdfvvtei evtehslrdt qakslqkpme vllgqsspgl
       61 caqscdgggt pvpadqglrw agdscpaspc qnqheskael kpgledasvl dsllgkavse
      121 llnkyacdlk dvwksksdan agtrefslgp ildkknradl hsairqkfpf lvtvtkdnem
      181 ivkgnadyre lcqfvteket sdffkfldak lenstfsfep dgdkehrkvv hhfinrkfgk
      241 lletksftvt dvndqqnmsi mvrfrekgws rkrpaggfqe kqdlytaftl qkenletlea
      301 isflaaelgv lpsdfsytgi kdkkaityqp mvvkkvtper lkeignkmek kgirihnihs
      361 acqhlrlgql kgnhfdvvvr dlkhhshdss adlkkrisea menvetkgfv nyygpqrfgq
      421 gqnvqtdqig lallneemvk avklfftped tddpvnnakr yflqtedakg alvmlpefkv
      481 rermllraln rygvnhegct kgwlsiphsm rifyvhaycs kiwneaasyr lsiygskvve
      541 gdlvfseetd etislndkvh vvtaaeesak kysinqvvlp mvghsikypg nkvgqwyher
      601 lskdelqtck frvsplqlni pgcyrpilkn vqnlsyfleg sekgieiedn ylneskvslh
      661 isfdldpscy atvclreimk cdf
//
LOCUS       XP_053913381             426 aa            linear   VRT 09-MAR-2023
DEFINITION  pseudouridylate synthase PUS7L isoform X2 [Cuculus canorus].
ACCESSION   XP_053913381
VERSION     XP_053913381.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057406.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..426
                     /product="pseudouridylate synthase PUS7L isoform X2"
                     /calculated_mol_wt=48631
     Region          28..422
                     /region_name="PseudoU_synth_ScPUS7"
                     /note="Pseudouridine synthase, TruD family; cd02576"
                     /db_xref="CDD:211341"
     Site            order(62..65,415)
                     /site_type="active"
                     /note="probable active site [active]"
                     /db_xref="CDD:211341"
     CDS             1..426
                     /gene="PUS7L"
                     /coded_by="XM_054057406.1:290..1570"
                     /db_xref="GeneID:104062405"
ORIGIN      
        1 msimvrfrek gwsrkrpagg fqekqdlyta ftlqkenlet leaisflaae lgvlpsdfsy
       61 tgikdkkait yqpmvvkkvt perlkeignk mekkgirihn ihsacqhlrl gqlkgnhfdv
      121 vvrdlkhhsh dssadlkkri seamenvetk gfvnyygpqr fgqgqnvqtd qiglallnee
      181 mvkavklfft pedtddpvnn akryflqted akgalvmlpe fkvrermllr alnrygvnhe
      241 gctkgwlsip hsmrifyvha ycskiwneaa syrlsiygsk vvegdlvfse etdetislnd
      301 kvhvvtaaee sakkysinqv vlpmvghsik ypgnkvgqwy herlskdelq tckfrvsplq
      361 lnipgcyrpi lknvqnlsyf legsekgiei ednylneskv slhisfdldp scyatvclre
      421 imkcdf
//
LOCUS       XP_053913393             464 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-1 receptor-associated kinase 4 [Cuculus canorus].
ACCESSION   XP_053913393
VERSION     XP_053913393.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057418.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..464
                     /product="interleukin-1 receptor-associated kinase 4"
                     /calculated_mol_wt=51797
     Region          9..108
                     /region_name="Death_IRAK4"
                     /note="Death domain of Interleukin-1 Receptor-Associated
                     Kinase 4; cd08793"
                     /db_xref="CDD:260060"
     Site            order(12,14,16..17,20,47..48,52,55..56,59,69,72..73,76,78)
                     /site_type="other"
                     /note="IRAK4-MyD88 interaction site [polypeptide binding]"
                     /db_xref="CDD:260060"
     Site            order(25,28..30,34,37,46,50,54,92..96,98,108)
                     /site_type="other"
                     /note="IRAK4-IRAK2 interaction site [polypeptide binding]"
                     /db_xref="CDD:260060"
     Region          175..462
                     /region_name="STKc_IRAK4"
                     /note="Catalytic domain of the Serine/Threonine kinase,
                     Interleukin-1 Receptor Associated Kinase 4; cd14158"
                     /db_xref="CDD:271060"
     Site            order(197..201,205,216,218,251,267..270,274,276,316,318,
                     320..321,323,334,337,355..358)
                     /site_type="active"
                     /db_xref="CDD:271060"
     Site            order(197..201,205,216,218,251,267..270,274,316,318,
                     320..321,323,334)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:271060"
     Site            order(201,274,276,316,318,320,337,355..358)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:271060"
     Site            order(333..345,347..358)
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:271060"
     CDS             1..464
                     /gene="IRAK4"
                     /coded_by="XM_054057418.1:87..1481"
                     /db_xref="GeneID:104062406"
ORIGIN      
        1 mskpvttsty vrclsyglmr qladlidpqe gwkklavdit npcgasrynq mhirrfeafv
       61 pmgksptcel lydwgttnct vgdlvdllir nqflapasll lpeavrmtee vtlplssqet
      121 lpihekqlpv qekelastkp ilvqstekqn sapsylsqen sssqssntdf rnfqfheles
      181 vtnhfdarpe saggnklgeg gfgvvfkgyi ngrnvavkkl iamvdvsvqd lkqqfdqeik
      241 imakcqhenl velvgfssdg aqpclvyeym pngslldrla cldntppisw ntrckivqgt
      301 anginylhen shihrdiksa nilltdtyvp kisdfglara svtftrtilt ervvgtaaym
      361 apealrgevt pksdifsfgv vlleiitglp pvdenrepql llsikddied eeatiedyvd
      421 ekmndwdals vhkiysvadq clnekknrrp diktvlqhlq eikt
//
LOCUS       XP_053913401             464 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-1 receptor-associated kinase 4 [Cuculus canorus].
ACCESSION   XP_053913401
VERSION     XP_053913401.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057426.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..464
                     /product="interleukin-1 receptor-associated kinase 4"
                     /calculated_mol_wt=51797
     Region          9..108
                     /region_name="Death_IRAK4"
                     /note="Death domain of Interleukin-1 Receptor-Associated
                     Kinase 4; cd08793"
                     /db_xref="CDD:260060"
     Site            order(12,14,16..17,20,47..48,52,55..56,59,69,72..73,76,78)
                     /site_type="other"
                     /note="IRAK4-MyD88 interaction site [polypeptide binding]"
                     /db_xref="CDD:260060"
     Site            order(25,28..30,34,37,46,50,54,92..96,98,108)
                     /site_type="other"
                     /note="IRAK4-IRAK2 interaction site [polypeptide binding]"
                     /db_xref="CDD:260060"
     Region          175..462
                     /region_name="STKc_IRAK4"
                     /note="Catalytic domain of the Serine/Threonine kinase,
                     Interleukin-1 Receptor Associated Kinase 4; cd14158"
                     /db_xref="CDD:271060"
     Site            order(197..201,205,216,218,251,267..270,274,276,316,318,
                     320..321,323,334,337,355..358)
                     /site_type="active"
                     /db_xref="CDD:271060"
     Site            order(197..201,205,216,218,251,267..270,274,316,318,
                     320..321,323,334)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:271060"
     Site            order(201,274,276,316,318,320,337,355..358)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:271060"
     Site            order(333..345,347..358)
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:271060"
     CDS             1..464
                     /gene="IRAK4"
                     /coded_by="XM_054057426.1:82..1476"
                     /db_xref="GeneID:104062406"
ORIGIN      
        1 mskpvttsty vrclsyglmr qladlidpqe gwkklavdit npcgasrynq mhirrfeafv
       61 pmgksptcel lydwgttnct vgdlvdllir nqflapasll lpeavrmtee vtlplssqet
      121 lpihekqlpv qekelastkp ilvqstekqn sapsylsqen sssqssntdf rnfqfheles
      181 vtnhfdarpe saggnklgeg gfgvvfkgyi ngrnvavkkl iamvdvsvqd lkqqfdqeik
      241 imakcqhenl velvgfssdg aqpclvyeym pngslldrla cldntppisw ntrckivqgt
      301 anginylhen shihrdiksa nilltdtyvp kisdfglara svtftrtilt ervvgtaaym
      361 apealrgevt pksdifsfgv vlleiitglp pvdenrepql llsikddied eeatiedyvd
      421 ekmndwdals vhkiysvadq clnekknrrp diktvlqhlq eikt
//
LOCUS       XP_053913405             464 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-1 receptor-associated kinase 4 [Cuculus canorus].
ACCESSION   XP_053913405
VERSION     XP_053913405.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057430.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..464
                     /product="interleukin-1 receptor-associated kinase 4"
                     /calculated_mol_wt=51797
     Region          9..108
                     /region_name="Death_IRAK4"
                     /note="Death domain of Interleukin-1 Receptor-Associated
                     Kinase 4; cd08793"
                     /db_xref="CDD:260060"
     Site            order(12,14,16..17,20,47..48,52,55..56,59,69,72..73,76,78)
                     /site_type="other"
                     /note="IRAK4-MyD88 interaction site [polypeptide binding]"
                     /db_xref="CDD:260060"
     Site            order(25,28..30,34,37,46,50,54,92..96,98,108)
                     /site_type="other"
                     /note="IRAK4-IRAK2 interaction site [polypeptide binding]"
                     /db_xref="CDD:260060"
     Region          175..462
                     /region_name="STKc_IRAK4"
                     /note="Catalytic domain of the Serine/Threonine kinase,
                     Interleukin-1 Receptor Associated Kinase 4; cd14158"
                     /db_xref="CDD:271060"
     Site            order(197..201,205,216,218,251,267..270,274,276,316,318,
                     320..321,323,334,337,355..358)
                     /site_type="active"
                     /db_xref="CDD:271060"
     Site            order(197..201,205,216,218,251,267..270,274,316,318,
                     320..321,323,334)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:271060"
     Site            order(201,274,276,316,318,320,337,355..358)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:271060"
     Site            order(333..345,347..358)
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:271060"
     CDS             1..464
                     /gene="IRAK4"
                     /coded_by="XM_054057430.1:59..1453"
                     /db_xref="GeneID:104062406"
ORIGIN      
        1 mskpvttsty vrclsyglmr qladlidpqe gwkklavdit npcgasrynq mhirrfeafv
       61 pmgksptcel lydwgttnct vgdlvdllir nqflapasll lpeavrmtee vtlplssqet
      121 lpihekqlpv qekelastkp ilvqstekqn sapsylsqen sssqssntdf rnfqfheles
      181 vtnhfdarpe saggnklgeg gfgvvfkgyi ngrnvavkkl iamvdvsvqd lkqqfdqeik
      241 imakcqhenl velvgfssdg aqpclvyeym pngslldrla cldntppisw ntrckivqgt
      301 anginylhen shihrdiksa nilltdtyvp kisdfglara svtftrtilt ervvgtaaym
      361 apealrgevt pksdifsfgv vlleiitglp pvdenrepql llsikddied eeatiedyvd
      421 ekmndwdals vhkiysvadq clnekknrrp diktvlqhlq eikt
//
LOCUS       XP_053913416            1276 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology domain-containing family A member 5 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053913416
VERSION     XP_053913416.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057441.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1276
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1276
                     /product="pleckstrin homology domain-containing family A
                     member 5 isoform X1"
                     /calculated_mol_wt=145146
     Region          15..44
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          60..89
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          166..269
                     /region_name="PH_PEPP1_2_3"
                     /note="Phosphoinositol 3-phosphate binding proteins 1, 2,
                     and 3 pleckstrin homology (PH) domain; cd13248"
                     /db_xref="CDD:270068"
     Site            order(180,182..183,190,192,203,246)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270068"
     Region          693..>873
                     /region_name="YhaN"
                     /note="Uncharacterized conserved protein YhaN, contains
                     AAA domain [Function unknown]; COG4717"
                     /db_xref="CDD:443752"
     CDS             1..1276
                     /gene="PLEKHA5"
                     /coded_by="XM_054057441.1:60..3890"
                     /db_xref="GeneID:104065614"
ORIGIN      
        1 maapaelsve rlralpnsws ygisqggrvf fineeakstt wlhpltgeav vtghrrsadl
       61 ptgweeaytf egaryyvnhn erkvtckhpv tgqpsqdnci fvvneqtaaa mtseekkerp
      121 vsmlceatny nltsdyaahp mspvgrtsrs skkvhnfgkr snsikrnpna pvvrrgwlyk
      181 qdstgmklwk krwfvlsdlc lfyyrdekee gilgsillps fqisvlsped hinrkyafka
      241 ahpnmrtyyf ctdtgkemel wmkamtdaal vqtepvkrve klapentphr eannisnhrv
      301 likpeaqnnq rnkevnkhee kkaleaekyg fqkvgqdkpl tkinsvklnp lgsdyrtlpi
      361 ttiqaghfrs vhlngsenka vgvvladtgd gghdaiqshl eservmqrtn smlqleqwik
      421 vqrgkgqeee trgviayqtl prnmpshrpq vlprypegyr tlprnsktrp eslcsvtpsa
      481 ydraigpvta eekrrsmrdd tmwqlyewqq rqfynkqttl trhstisspk tminisdqtm
      541 hsiptspshg siagfqgysp qrtyrsevss pvqrgdvtid rrhrthhakh vfvpdrrsmp
      601 aglslqpvtp qslqgktpee ltllliklrr qqaelssire htlaqlmqlk leasspknei
      661 lshhlqrnai yldhqmkene plitmvhtmi ensalrpqly qqlsqeecrg tlykyrteel
      721 didaklsrlc eqdkvvqale eklqqlhkek ytleqallsa sqeiemnadn paaiqnvvlq
      781 rddlqnglls tcrevsrata elerawrdye kleydvtvtr nhmqeqldrl geiqtesagi
      841 qraqiqkelw riqdvmegls khkqqrsssd agimgsrtfs aikykneeee vvpprpplpr
      901 sydftehlpi ipplpsdsss llcysrgpvh lpeekkmhqv qgyqrngsyc gpdyrlykse
      961 pelttvaevd esngeekieq isesestakg shfpvgvvpp rtksptpess tiasyvtlrk
     1021 nkkmdlrter prsaveqlcl aestrprmtv eeqmerikrh qqaclrekrk glniigisdq
     1081 spsqslsfvr dnpfklaqnr kkddnvfsnm kelesisken nlkqnneipg eeiaqlkhdg
     1141 eqeynsgftk eltktddlls dayvvsdske vsneekaeke kknkleekrd sdislqsvtt
     1201 vtnhkpktss eeseivsvqe qegimssfel eaqsskgnqa ttvkslpssp esslspapst
     1261 qtqltegshf itngfc
//
LOCUS       XP_053913426            1273 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology domain-containing family A member 5 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053913426
VERSION     XP_053913426.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057451.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1273
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1273
                     /product="pleckstrin homology domain-containing family A
                     member 5 isoform X2"
                     /calculated_mol_wt=144844
     Region          15..44
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          60..89
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          166..269
                     /region_name="PH_PEPP1_2_3"
                     /note="Phosphoinositol 3-phosphate binding proteins 1, 2,
                     and 3 pleckstrin homology (PH) domain; cd13248"
                     /db_xref="CDD:270068"
     Site            order(180,182..183,190,192,203,246)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270068"
     Region          693..>873
                     /region_name="YhaN"
                     /note="Uncharacterized conserved protein YhaN, contains
                     AAA domain [Function unknown]; COG4717"
                     /db_xref="CDD:443752"
     CDS             1..1273
                     /gene="PLEKHA5"
                     /coded_by="XM_054057451.1:60..3881"
                     /db_xref="GeneID:104065614"
ORIGIN      
        1 maapaelsve rlralpnsws ygisqggrvf fineeakstt wlhpltgeav vtghrrsadl
       61 ptgweeaytf egaryyvnhn erkvtckhpv tgqpsqdnci fvvneqtaaa mtseekkerp
      121 vsmlceatny nltsdyaahp mspvgrtsrs skkvhnfgkr snsikrnpna pvvrrgwlyk
      181 qdstgmklwk krwfvlsdlc lfyyrdekee gilgsillps fqisvlsped hinrkyafka
      241 ahpnmrtyyf ctdtgkemel wmkamtdaal vqtepvkrve klapentphr eannisnhrv
      301 likpeaqnnq rnkevnkhee kkaleaekyg fqkvgqdkpl tkinsvklnp lgsdyrtlpi
      361 ttiqaghfrs vhlngsenka vgvvladtgd gghdaiqshl eservmqrtn smlqleqwik
      421 vqrgkgqeee trgviayqtl prnmpshrpq vlprypegyr tlprnsktrp eslcsvtpsa
      481 ydraigpvta eekrrsmrdd tmwqlyewqq rqfynkqttl trhstisspk tminisdqtm
      541 hsiptspshg siagfqgysp qrtyrsevss pvqrgdvtid rrhrthhakh vfvpdrrsmp
      601 aglslqpvtp qslqgktpee ltllliklrr qqaelssire htlaqlmqlk leasspknei
      661 lshhlqrnai yldhqmkene plitmvhtmi ensalrpqly qqlsqeecrg tlykyrteel
      721 didaklsrlc eqdkvvqale eklqqlhkek ytleqallsa sqeiemnadn paaiqnvvlq
      781 rddlqnglls tcrevsrata elerawrdye kleydvtvtr nhmqeqldrl geiqtesagi
      841 qraqiqkelw riqdvmegls khkqqrsssd agimgsrtfs aikykneeee vvpprpplpr
      901 sydftehlpi ipplpsdsss llcysrgpvh lpeekkmhqv qgyqrngsyc gpdyrlykse
      961 pelttvaevd esngeekieq isesestakg shfpvgvvpp rtksptpess tiasyvtlrk
     1021 nkkmdlrter prsaveqlcl aestrprmtv eeqmerikrh qqaclrekrk glniigisdq
     1081 spsqslsfvr dnpfklaqnr kkddnvfsnm kelesisken nlkqnneipg eeiaqlkhdg
     1141 eqeynsgftk eltktddlls dayvvsdske vsneekaeke kknkleekrd sdislqsvtt
     1201 vtnhkpktss eeseivsvqe qegimssfel eaqsskgnqa ttvkslpssp esslspapst
     1261 qtqltegshf mcv
//
LOCUS       XP_053913435            1258 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology domain-containing family A member 5 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053913435
VERSION     XP_053913435.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057460.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1258
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1258
                     /product="pleckstrin homology domain-containing family A
                     member 5 isoform X3"
                     /calculated_mol_wt=143311
     Region          15..44
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          60..89
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          166..269
                     /region_name="PH_PEPP1_2_3"
                     /note="Phosphoinositol 3-phosphate binding proteins 1, 2,
                     and 3 pleckstrin homology (PH) domain; cd13248"
                     /db_xref="CDD:270068"
     Site            order(180,182..183,190,192,203,246)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270068"
     Region          693..>873
                     /region_name="YhaN"
                     /note="Uncharacterized conserved protein YhaN, contains
                     AAA domain [Function unknown]; COG4717"
                     /db_xref="CDD:443752"
     CDS             1..1258
                     /gene="PLEKHA5"
                     /coded_by="XM_054057460.1:60..3836"
                     /db_xref="GeneID:104065614"
ORIGIN      
        1 maapaelsve rlralpnsws ygisqggrvf fineeakstt wlhpltgeav vtghrrsadl
       61 ptgweeaytf egaryyvnhn erkvtckhpv tgqpsqdnci fvvneqtaaa mtseekkerp
      121 vsmlceatny nltsdyaahp mspvgrtsrs skkvhnfgkr snsikrnpna pvvrrgwlyk
      181 qdstgmklwk krwfvlsdlc lfyyrdekee gilgsillps fqisvlsped hinrkyafka
      241 ahpnmrtyyf ctdtgkemel wmkamtdaal vqtepvkrve klapentphr eannisnhrv
      301 likpeaqnnq rnkevnkhee kkaleaekyg fqkvgqdkpl tkinsvklnp lgsdyrtlpi
      361 ttiqaghfrs vhlngsenka vgvvladtgd gghdaiqshl eservmqrtn smlqleqwik
      421 vqrgkgqeee trgviayqtl prnmpshrpq vlprypegyr tlprnsktrp eslcsvtpsa
      481 ydraigpvta eekrrsmrdd tmwqlyewqq rqfynkqttl trhstisspk tminisdqtm
      541 hsiptspshg siagfqgysp qrtyrsevss pvqrgdvtid rrhrthhakh vfvpdrrsmp
      601 aglslqpvtp qslqgktpee ltllliklrr qqaelssire htlaqlmqlk leasspknei
      661 lshhlqrnai yldhqmkene plitmvhtmi ensalrpqly qqlsqeecrg tlykyrteel
      721 didaklsrlc eqdkvvqale eklqqlhkek ytleqallsa sqeiemnadn paaiqnvvlq
      781 rddlqnglls tcrevsrata elerawrdye kleydvtvtr nhmqeqldrl geiqtesagi
      841 qraqiqkelw riqdvmegls khkqqrsssd agimgsrtfs aikykneeee vvpprpplpr
      901 sydftehlpi ipplpsdsss llcysrgpvh lpeekkmhqv qgyqrngsyc gpdyrlykse
      961 pelttvaevd esngeekieq isesestakg shfpvgvvpp rtksptpess tiasyvtlrk
     1021 nkkmdlrter prsaveqlcl aestrprmtv eeqmerikrh qqaclrekrk glniigisdq
     1081 spsqslsfvr dnpfklaqnr kkddnvfsnm kelesisken nlkqnneipg eeiaqlkhdg
     1141 eqeynsgftk eltktddlls dayvvsdske vsneekaeke kknkleekrd sdislqsvtt
     1201 vtnhkpktss eeseivsvqe qegimssfel eaqsskgnqa ttalmasvet ihagdvwt
//
LOCUS       XP_053913442            1249 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology domain-containing family A member 5 isoform X4
            [Cuculus canorus].
ACCESSION   XP_053913442
VERSION     XP_053913442.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057467.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1249
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1249
                     /product="pleckstrin homology domain-containing family A
                     member 5 isoform X4"
                     /calculated_mol_wt=141948
     Region          15..44
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          60..89
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          166..269
                     /region_name="PH_PEPP1_2_3"
                     /note="Phosphoinositol 3-phosphate binding proteins 1, 2,
                     and 3 pleckstrin homology (PH) domain; cd13248"
                     /db_xref="CDD:270068"
     Site            order(180,182..183,190,192,203,246)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270068"
     Region          614..>803
                     /region_name="YhaN"
                     /note="Uncharacterized conserved protein YhaN, contains
                     AAA domain [Function unknown]; COG4717"
                     /db_xref="CDD:443752"
     CDS             1..1249
                     /gene="PLEKHA5"
                     /coded_by="XM_054057467.1:60..3809"
                     /db_xref="GeneID:104065614"
ORIGIN      
        1 maapaelsve rlralpnsws ygisqggrvf fineeakstt wlhpltgeav vtghrrsadl
       61 ptgweeaytf egaryyvnhn erkvtckhpv tgqpsqdnci fvvneqtaaa mtseekkerp
      121 vsmlceatny nltsdyaahp mspvgrtsrs skkvhnfgkr snsikrnpna pvvrrgwlyk
      181 qdstgmklwk krwfvlsdlc lfyyrdekee gilgsillps fqisvlsped hinrkyafka
      241 ahpnmrtyyf ctdtgkemel wmkamtdaal vqtepvkrve klapentphr eannisnhrv
      301 likpeaqnnq rnkevnkhee kkaleaekyg fqkvgqdkpl tkinsvklnp lgsdyrtlpi
      361 ttiqaghfrs vhlngsenka vgvvladtgd gghdaiqshl eservmqrtn smlqleqwik
      421 vqrgkgqeee trgviayqtl prnmpshrpq vlprypegyr tlprnsktrp eslcsvtpsa
      481 ydraigpvta eekrrsmrdd tmwqlyewqq rqfynkqttl trhstisspk tminisdqtm
      541 hsiptspshg siagfqgysp qrtyrsevss pvqrgdvtid rrhrthhakh vfvpdrrsmp
      601 aglslqpvtp qslqgktpee ltllliklrr qqaelssire htlaqlmqlk leasspknei
      661 lshhlqrnai yldhqlsqee crgtlykyrt eeldidakls rlceqdkvvq aleeklqqlh
      721 kekytleqal lsasqeiemn adnpaaiqnv vlqrddlqng llstcrevsr ataelerawr
      781 dyekleydvt vtrnhmqeql drlgeiqtes agiqraqiqk elwriqdvme glskhkqqrs
      841 ssdagimgsr tfsaikykne eeevvpprpp lprsydfteh lpiipplpsd sssllcysrg
      901 pvhlpeekkm hqvqgyqrng sycgpdyrly ksepelttva evdesngeek ieqisesest
      961 akgshfpvgv vpprtksptp esstiasyvt lrknkkmdlr terprsaveq lclaestrpr
     1021 mtveeqmeri krhqqaclre krkglniigi sdqspsqsls fvrdnpfkla qnrkkddnvf
     1081 snmkelesis kennlkqnne ipgeeiaqlk hdgeqeynsg ftkeltktdd llsdayvvsd
     1141 skevsneeka ekekknklee krdsdislqs vttvtnhkpk tsseeseivs vqeqegimss
     1201 feleaqsskg nqattvkslp sspesslspa pstqtqlteg shfitngfc
//
LOCUS       XP_053913447            1231 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology domain-containing family A member 5 isoform X5
            [Cuculus canorus].
ACCESSION   XP_053913447
VERSION     XP_053913447.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057472.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1231
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1231
                     /product="pleckstrin homology domain-containing family A
                     member 5 isoform X5"
                     /calculated_mol_wt=139765
     Region          15..44
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          60..89
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          166..269
                     /region_name="PH_PEPP1_2_3"
                     /note="Phosphoinositol 3-phosphate binding proteins 1, 2,
                     and 3 pleckstrin homology (PH) domain; cd13248"
                     /db_xref="CDD:270068"
     Site            order(180,182..183,190,192,203,246)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270068"
     Region          <619..>803
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..1231
                     /gene="PLEKHA5"
                     /coded_by="XM_054057472.1:60..3755"
                     /db_xref="GeneID:104065614"
ORIGIN      
        1 maapaelsve rlralpnsws ygisqggrvf fineeakstt wlhpltgeav vtghrrsadl
       61 ptgweeaytf egaryyvnhn erkvtckhpv tgqpsqdnci fvvneqtaaa mtseekkerp
      121 vsmlceatny nltsdyaahp mspvgrtsrs skkvhnfgkr snsikrnpna pvvrrgwlyk
      181 qdstgmklwk krwfvlsdlc lfyyrdekee gilgsillps fqisvlsped hinrkyafka
      241 ahpnmrtyyf ctdtgkemel wmkamtdaal vqtepvkrve klapentphr eannisnhrv
      301 likpeaqnnq rnkevnkhee kkaleaekyg fqkvgqdkpl tkinsvklnp lgsdyrtlpi
      361 ttiqaghfrs vhlngsenka vgvvladtgd gghdaiqshl eservmqrtn smlqleqwik
      421 vqrgkgqeee trgviayqtl prnmpshrpq vlprypegyr tlprnsktrp eslcsvtpsa
      481 ydraigpvta eekrrsmrdd tmwqlyewqq rqfynkqttl trhstisspk tminisdqtm
      541 hsiptspshg siagfqgysp qrtyrsevss pvqrgdvtid rrhrthhakh vfvpdrrsmp
      601 aglslqpvtp qslqgktpee ltllliklrr qqaelssire htlaqlmqlk leasspklsq
      661 eecrgtlyky rteeldidak lsrlceqdkv vqaleeklqq lhkekytleq allsasqeie
      721 mnadnpaaiq nvvlqrddlq ngllstcrev srataelera wrdyekleyd vtvtrnhmqe
      781 qldrlgeiqt esagiqraqi qkelwriqdv meglskhkqq rsssdagimg srtfsaikyk
      841 neeeevvppr pplprsydft ehlpiipplp sdsssllcys rgpvhlpeek kmhqvqgyqr
      901 ngsycgpdyr lyksepeltt vaevdesnge ekieqisese stakgshfpv gvvpprtksp
      961 tpesstiasy vtlrknkkmd lrterprsav eqlclaestr prmtveeqme rikrhqqacl
     1021 rekrkglnii gisdqspsqs lsfvrdnpfk laqnrkkddn vfsnmkeles iskennlkqn
     1081 neipgeeiaq lkhdgeqeyn sgftkeltkt ddllsdayvv sdskevsnee kaekekknkl
     1141 eekrdsdisl qsvttvtnhk pktsseesei vsvqeqegim ssfeleaqss kgnqattvks
     1201 lpsspessls papstqtqlt egshfitngf c
//
LOCUS       XP_053913452            1213 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology domain-containing family A member 5 isoform X6
            [Cuculus canorus].
ACCESSION   XP_053913452
VERSION     XP_053913452.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057477.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1213
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1213
                     /product="pleckstrin homology domain-containing family A
                     member 5 isoform X6"
                     /calculated_mol_wt=137961
     Region          15..44
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          60..89
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          166..269
                     /region_name="PH_PEPP1_2_3"
                     /note="Phosphoinositol 3-phosphate binding proteins 1, 2,
                     and 3 pleckstrin homology (PH) domain; cd13248"
                     /db_xref="CDD:270068"
     Site            order(180,182..183,190,192,203,246)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270068"
     Region          693..>873
                     /region_name="YhaN"
                     /note="Uncharacterized conserved protein YhaN, contains
                     AAA domain [Function unknown]; COG4717"
                     /db_xref="CDD:443752"
     CDS             1..1213
                     /gene="PLEKHA5"
                     /coded_by="XM_054057477.1:60..3701"
                     /db_xref="GeneID:104065614"
ORIGIN      
        1 maapaelsve rlralpnsws ygisqggrvf fineeakstt wlhpltgeav vtghrrsadl
       61 ptgweeaytf egaryyvnhn erkvtckhpv tgqpsqdnci fvvneqtaaa mtseekkerp
      121 vsmlceatny nltsdyaahp mspvgrtsrs skkvhnfgkr snsikrnpna pvvrrgwlyk
      181 qdstgmklwk krwfvlsdlc lfyyrdekee gilgsillps fqisvlsped hinrkyafka
      241 ahpnmrtyyf ctdtgkemel wmkamtdaal vqtepvkrve klapentphr eannisnhrv
      301 likpeaqnnq rnkevnkhee kkaleaekyg fqkvgqdkpl tkinsvklnp lgsdyrtlpi
      361 ttiqaghfrs vhlngsenka vgvvladtgd gghdaiqshl eservmqrtn smlqleqwik
      421 vqrgkgqeee trgviayqtl prnmpshrpq vlprypegyr tlprnsktrp eslcsvtpsa
      481 ydraigpvta eekrrsmrdd tmwqlyewqq rqfynkqttl trhstisspk tminisdqtm
      541 hsiptspshg siagfqgysp qrtyrsevss pvqrgdvtid rrhrthhakh vfvpdrrsmp
      601 aglslqpvtp qslqgktpee ltllliklrr qqaelssire htlaqlmqlk leasspknei
      661 lshhlqrnai yldhqmkene plitmvhtmi ensalrpqly qqlsqeecrg tlykyrteel
      721 didaklsrlc eqdkvvqale eklqqlhkek ytleqallsa sqeiemnadn paaiqnvvlq
      781 rddlqnglls tcrevsrata elerawrdye kleydvtvtr nhmqeqldrl geiqtesagi
      841 qraqiqkelw riqdvmegls khkqqrsssd agimgsrtfs aikyknegpd yrlyksepel
      901 ttvaevdesn geekieqise sestakgshf pvgvvpprtk sptpesstia syvtlrknkk
      961 mdlrterprs aveqlclaes trprmtveeq merikrhqqa clrekrkgln iigisdqsps
     1021 qslsfvrdnp fklaqnrkkd dnvfsnmkel esiskennlk qnneipgeei aqlkhdgeqe
     1081 ynsgftkelt ktddllsday vvsdskevsn eekaekekkn kleekrdsdi slqsvttvtn
     1141 hkpktssees eivsvqeqeg imssfeleaq sskgnqattv kslpsspess lspapstqtq
     1201 ltegshfitn gfc
//
LOCUS       XP_053913462            1166 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology domain-containing family A member 5 isoform X7
            [Cuculus canorus].
ACCESSION   XP_053913462
VERSION     XP_053913462.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057487.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1166
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1166
                     /product="pleckstrin homology domain-containing family A
                     member 5 isoform X7"
                     /calculated_mol_wt=132941
     Region          56..159
                     /region_name="PH_PEPP1_2_3"
                     /note="Phosphoinositol 3-phosphate binding proteins 1, 2,
                     and 3 pleckstrin homology (PH) domain; cd13248"
                     /db_xref="CDD:270068"
     Site            order(70,72..73,80,82,93,136)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270068"
     Region          <612..>761
                     /region_name="COG4913"
                     /note="Uncharacterized conserved protein, contains a
                     C-terminal ATPase domain [Function unknown]"
                     /db_xref="CDD:443941"
     CDS             1..1166
                     /gene="PLEKHA5"
                     /coded_by="XM_054057487.1:117..3617"
                     /db_xref="GeneID:104065614"
ORIGIN      
        1 mtseekkerp vsmlceatny nltsdyaahp mspvgrtsrs skkvhnfgkr snsikrnpna
       61 pvvrrgwlyk qdstgmklwk krwfvlsdlc lfyyrdekee gilgsillps fqisvlsped
      121 hinrkyafka ahpnmrtyyf ctdtgkemel wmkamtdaal vqtepvkrve klapentphr
      181 eannisnhrv likpeaqnnq rnkevnkhee kkaleaekyg fqkvgqdkpl tkinsvklnp
      241 lgsdyrtlpi ttiqaghfrs vhlngsenka vgvvladtgd gghdaiqshl eservmqrtn
      301 smlqleqwik vqrgkgqeee trgviayqtl prnmpshrpq vlprypegyr tlprnsktrp
      361 eslcsvtpsa ydraigpvta eekrrsmrdd tmwqlyewqq rqfynkqttl trhstisspk
      421 tminisdqtm hsiptspshg siagfqgysp qrtyrsevss pvqrgdvtid rrhrthhakh
      481 vfvpdrrsmp aglslqpvtp qslqgktpee ltllliklrr qqaelssire htlaqlmqlk
      541 leasspknei lshhlqrnai yldhqmkene plitmvhtmi ensalrpqly qqlsqeecrg
      601 tlykyrteel didaklsrlc eqdkvvqale eklqqlhkek ytleqallsa sqeiemnadn
      661 paaiqnvvlq rddlqnglls tcrevsrata elerawrdye kleydvtvtr nhmqeqldrl
      721 geiqtesagi qraqiqkelw riqdvmegls khkqqrsssd agimgsrtfs aikykneeee
      781 vvpprpplpr sydftehlpi ipplpsdsss llcysrgpvh lpeekkmhqv qgyqrngsyc
      841 gpdyrlykse pelttvaevd esngeekieq isesestakg shfpvgvvpp rtksptpess
      901 tiasyvtlrk nkkmdlrter prsaveqlcl aestrprmtv eeqmerikrh qqaclrekrk
      961 glniigisdq spsqslsfvr dnpfklaqnr kkddnvfsnm kelesisken nlkqnneipg
     1021 eeiaqlkhdg eqeynsgftk eltktddlls dayvvsdske vsneekaeke kknkleekrd
     1081 sdislqsvtt vtnhkpktss eeseivsvqe qegimssfel eaqsskgnqa ttvkslpssp
     1141 esslspapst qtqltegshf itngfc
//
LOCUS       XP_053913471            1191 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology domain-containing family A member 5 isoform X8
            [Cuculus canorus].
ACCESSION   XP_053913471
VERSION     XP_053913471.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057496.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1191
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1191
                     /product="pleckstrin homology domain-containing family A
                     member 5 isoform X8"
                     /calculated_mol_wt=135169
     Region          15..44
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          60..89
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          166..269
                     /region_name="PH_PEPP1_2_3"
                     /note="Phosphoinositol 3-phosphate binding proteins 1, 2,
                     and 3 pleckstrin homology (PH) domain; cd13248"
                     /db_xref="CDD:270068"
     Site            order(180,182..183,190,192,203,246)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270068"
     Region          <611..>763
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..1191
                     /gene="PLEKHA5"
                     /coded_by="XM_054057496.1:60..3635"
                     /db_xref="GeneID:104065614"
ORIGIN      
        1 maapaelsve rlralpnsws ygisqggrvf fineeakstt wlhpltgeav vtghrrsadl
       61 ptgweeaytf egaryyvnhn erkvtckhpv tgqpsqdnci fvvneqtaaa mtseekkerp
      121 vsmlceatny nltsdyaahp mspvgrtsrs skkvhnfgkr snsikrnpna pvvrrgwlyk
      181 qdstgmklwk krwfvlsdlc lfyyrdekee gilgsillps fqisvlsped hinrkyafka
      241 ahpnmrtyyf ctdtgkemel wmkamtdaal vqtepvkrve klapentphr eannisnhrv
      301 likpeaqnnq rnkevnkhee kkaleaekyg fqkvgqdkpl tkinsvklnp lgsdyrtlpi
      361 ttiqaghfrs vhlngsenka vgvvladtgd gghdaiqshl eservmqrtn smlqleqwik
      421 vqrgkgqeee trgviayqtl prnmpshrpq vlprypegyr tlprnsktrp eslcsvtpsa
      481 ydraigpvta eekrrsmrdd tmwqlyewqq rqfynkqttl trhstisspk tminisdqtm
      541 hsiptspshg siagfqgysp qrtyrsevss pvqrgdvtid rrhrthhakh vfvpdrrsmp
      601 aglslqpvtp qslqgktlsq eecrgtlyky rteeldidak lsrlceqdkv vqaleeklqq
      661 lhkekytleq allsasqeie mnadnpaaiq nvvlqrddlq ngllstcrev srataelera
      721 wrdyekleyd vtvtrnhmqe qldrlgeiqt esagiqraqi qkelwriqdv meglskhkqq
      781 rsssdagimg srtfsaikyk neeeevvppr pplprsydft ehlpiipplp sdsssllcys
      841 rgpvhlpeek kmhqvqgyqr ngsycgpdyr lyksepeltt vaevdesnge ekieqisese
      901 stakgshfpv gvvpprtksp tpesstiasy vtlrknkkmd lrterprsav eqlclaestr
      961 prmtveeqme rikrhqqacl rekrkglnii gisdqspsqs lsfvrdnpfk laqnrkkddn
     1021 vfsnmkeles iskennlkqn neipgeeiaq lkhdgeqeyn sgftkeltkt ddllsdayvv
     1081 sdskevsnee kaekekknkl eekrdsdisl qsvttvtnhk pktsseesei vsvqeqegim
     1141 ssfeleaqss kgnqattvks lpsspessls papstqtqlt egshfitngf c
//
LOCUS       XP_053913477            1186 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology domain-containing family A member 5 isoform X9
            [Cuculus canorus].
ACCESSION   XP_053913477
VERSION     XP_053913477.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057502.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1186
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1186
                     /product="pleckstrin homology domain-containing family A
                     member 5 isoform X9"
                     /calculated_mol_wt=134763
     Region          15..44
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          60..89
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          166..269
                     /region_name="PH_PEPP1_2_3"
                     /note="Phosphoinositol 3-phosphate binding proteins 1, 2,
                     and 3 pleckstrin homology (PH) domain; cd13248"
                     /db_xref="CDD:270068"
     Site            order(180,182..183,190,192,203,246)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270068"
     Region          614..>803
                     /region_name="YhaN"
                     /note="Uncharacterized conserved protein YhaN, contains
                     AAA domain [Function unknown]; COG4717"
                     /db_xref="CDD:443752"
     CDS             1..1186
                     /gene="PLEKHA5"
                     /coded_by="XM_054057502.1:60..3620"
                     /db_xref="GeneID:104065614"
ORIGIN      
        1 maapaelsve rlralpnsws ygisqggrvf fineeakstt wlhpltgeav vtghrrsadl
       61 ptgweeaytf egaryyvnhn erkvtckhpv tgqpsqdnci fvvneqtaaa mtseekkerp
      121 vsmlceatny nltsdyaahp mspvgrtsrs skkvhnfgkr snsikrnpna pvvrrgwlyk
      181 qdstgmklwk krwfvlsdlc lfyyrdekee gilgsillps fqisvlsped hinrkyafka
      241 ahpnmrtyyf ctdtgkemel wmkamtdaal vqtepvkrve klapentphr eannisnhrv
      301 likpeaqnnq rnkevnkhee kkaleaekyg fqkvgqdkpl tkinsvklnp lgsdyrtlpi
      361 ttiqaghfrs vhlngsenka vgvvladtgd gghdaiqshl eservmqrtn smlqleqwik
      421 vqrgkgqeee trgviayqtl prnmpshrpq vlprypegyr tlprnsktrp eslcsvtpsa
      481 ydraigpvta eekrrsmrdd tmwqlyewqq rqfynkqttl trhstisspk tminisdqtm
      541 hsiptspshg siagfqgysp qrtyrsevss pvqrgdvtid rrhrthhakh vfvpdrrsmp
      601 aglslqpvtp qslqgktpee ltllliklrr qqaelssire htlaqlmqlk leasspknei
      661 lshhlqrnai yldhqlsqee crgtlykyrt eeldidakls rlceqdkvvq aleeklqqlh
      721 kekytleqal lsasqeiemn adnpaaiqnv vlqrddlqng llstcrevsr ataelerawr
      781 dyekleydvt vtrnhmqeql drlgeiqtes agiqraqiqk elwriqdvme glskhkqqrs
      841 ssdagimgsr tfsaikykne gpdyrlykse pelttvaevd esngeekieq isesestakg
      901 shfpvgvvpp rtksptpess tiasyvtlrk nkkmdlrter prsaveqlcl aestrprmtv
      961 eeqmerikrh qqaclrekrk glniigisdq spsqslsfvr dnpfklaqnr kkddnvfsnm
     1021 kelesisken nlkqnneipg eeiaqlkhdg eqeynsgftk eltktddlls dayvvsdske
     1081 vsneekaeke kknkleekrd sdislqsvtt vtnhkpktss eeseivsvqe qegimssfel
     1141 eaqsskgnqa ttvkslpssp esslspapst qtqltegshf itngfc
//
LOCUS       XP_053913482            1168 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology domain-containing family A member 5 isoform X10
            [Cuculus canorus].
ACCESSION   XP_053913482
VERSION     XP_053913482.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057507.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1168
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1168
                     /product="pleckstrin homology domain-containing family A
                     member 5 isoform X10"
                     /calculated_mol_wt=132579
     Region          15..44
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          60..89
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          166..269
                     /region_name="PH_PEPP1_2_3"
                     /note="Phosphoinositol 3-phosphate binding proteins 1, 2,
                     and 3 pleckstrin homology (PH) domain; cd13248"
                     /db_xref="CDD:270068"
     Site            order(180,182..183,190,192,203,246)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270068"
     Region          <619..>803
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..1168
                     /gene="PLEKHA5"
                     /coded_by="XM_054057507.1:60..3566"
                     /db_xref="GeneID:104065614"
ORIGIN      
        1 maapaelsve rlralpnsws ygisqggrvf fineeakstt wlhpltgeav vtghrrsadl
       61 ptgweeaytf egaryyvnhn erkvtckhpv tgqpsqdnci fvvneqtaaa mtseekkerp
      121 vsmlceatny nltsdyaahp mspvgrtsrs skkvhnfgkr snsikrnpna pvvrrgwlyk
      181 qdstgmklwk krwfvlsdlc lfyyrdekee gilgsillps fqisvlsped hinrkyafka
      241 ahpnmrtyyf ctdtgkemel wmkamtdaal vqtepvkrve klapentphr eannisnhrv
      301 likpeaqnnq rnkevnkhee kkaleaekyg fqkvgqdkpl tkinsvklnp lgsdyrtlpi
      361 ttiqaghfrs vhlngsenka vgvvladtgd gghdaiqshl eservmqrtn smlqleqwik
      421 vqrgkgqeee trgviayqtl prnmpshrpq vlprypegyr tlprnsktrp eslcsvtpsa
      481 ydraigpvta eekrrsmrdd tmwqlyewqq rqfynkqttl trhstisspk tminisdqtm
      541 hsiptspshg siagfqgysp qrtyrsevss pvqrgdvtid rrhrthhakh vfvpdrrsmp
      601 aglslqpvtp qslqgktpee ltllliklrr qqaelssire htlaqlmqlk leasspklsq
      661 eecrgtlyky rteeldidak lsrlceqdkv vqaleeklqq lhkekytleq allsasqeie
      721 mnadnpaaiq nvvlqrddlq ngllstcrev srataelera wrdyekleyd vtvtrnhmqe
      781 qldrlgeiqt esagiqraqi qkelwriqdv meglskhkqq rsssdagimg srtfsaikyk
      841 negpdyrlyk sepelttvae vdesngeeki eqisesesta kgshfpvgvv pprtksptpe
      901 sstiasyvtl rknkkmdlrt erprsaveql claestrprm tveeqmerik rhqqaclrek
      961 rkglniigis dqspsqslsf vrdnpfklaq nrkkddnvfs nmkelesisk ennlkqnnei
     1021 pgeeiaqlkh dgeqeynsgf tkeltktddl lsdayvvsds kevsneekae kekknkleek
     1081 rdsdislqsv ttvtnhkpkt sseeseivsv qeqegimssf eleaqsskgn qattvkslps
     1141 spesslspap stqtqltegs hfitngfc
//
LOCUS       XP_053913491            1166 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology domain-containing family A member 5 isoform X7
            [Cuculus canorus].
ACCESSION   XP_053913491
VERSION     XP_053913491.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057516.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1166
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1166
                     /product="pleckstrin homology domain-containing family A
                     member 5 isoform X7"
                     /calculated_mol_wt=132941
     Region          56..159
                     /region_name="PH_PEPP1_2_3"
                     /note="Phosphoinositol 3-phosphate binding proteins 1, 2,
                     and 3 pleckstrin homology (PH) domain; cd13248"
                     /db_xref="CDD:270068"
     Site            order(70,72..73,80,82,93,136)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270068"
     Region          <612..>761
                     /region_name="COG4913"
                     /note="Uncharacterized conserved protein, contains a
                     C-terminal ATPase domain [Function unknown]"
                     /db_xref="CDD:443941"
     CDS             1..1166
                     /gene="PLEKHA5"
                     /coded_by="XM_054057516.1:228..3728"
                     /db_xref="GeneID:104065614"
ORIGIN      
        1 mtseekkerp vsmlceatny nltsdyaahp mspvgrtsrs skkvhnfgkr snsikrnpna
       61 pvvrrgwlyk qdstgmklwk krwfvlsdlc lfyyrdekee gilgsillps fqisvlsped
      121 hinrkyafka ahpnmrtyyf ctdtgkemel wmkamtdaal vqtepvkrve klapentphr
      181 eannisnhrv likpeaqnnq rnkevnkhee kkaleaekyg fqkvgqdkpl tkinsvklnp
      241 lgsdyrtlpi ttiqaghfrs vhlngsenka vgvvladtgd gghdaiqshl eservmqrtn
      301 smlqleqwik vqrgkgqeee trgviayqtl prnmpshrpq vlprypegyr tlprnsktrp
      361 eslcsvtpsa ydraigpvta eekrrsmrdd tmwqlyewqq rqfynkqttl trhstisspk
      421 tminisdqtm hsiptspshg siagfqgysp qrtyrsevss pvqrgdvtid rrhrthhakh
      481 vfvpdrrsmp aglslqpvtp qslqgktpee ltllliklrr qqaelssire htlaqlmqlk
      541 leasspknei lshhlqrnai yldhqmkene plitmvhtmi ensalrpqly qqlsqeecrg
      601 tlykyrteel didaklsrlc eqdkvvqale eklqqlhkek ytleqallsa sqeiemnadn
      661 paaiqnvvlq rddlqnglls tcrevsrata elerawrdye kleydvtvtr nhmqeqldrl
      721 geiqtesagi qraqiqkelw riqdvmegls khkqqrsssd agimgsrtfs aikykneeee
      781 vvpprpplpr sydftehlpi ipplpsdsss llcysrgpvh lpeekkmhqv qgyqrngsyc
      841 gpdyrlykse pelttvaevd esngeekieq isesestakg shfpvgvvpp rtksptpess
      901 tiasyvtlrk nkkmdlrter prsaveqlcl aestrprmtv eeqmerikrh qqaclrekrk
      961 glniigisdq spsqslsfvr dnpfklaqnr kkddnvfsnm kelesisken nlkqnneipg
     1021 eeiaqlkhdg eqeynsgftk eltktddlls dayvvsdske vsneekaeke kknkleekrd
     1081 sdislqsvtt vtnhkpktss eeseivsvqe qegimssfel eaqsskgnqa ttvkslpssp
     1141 esslspapst qtqltegshf itngfc
//
LOCUS       XP_053913500            1166 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology domain-containing family A member 5 isoform X7
            [Cuculus canorus].
ACCESSION   XP_053913500
VERSION     XP_053913500.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057525.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1166
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1166
                     /product="pleckstrin homology domain-containing family A
                     member 5 isoform X7"
                     /calculated_mol_wt=132941
     Region          56..159
                     /region_name="PH_PEPP1_2_3"
                     /note="Phosphoinositol 3-phosphate binding proteins 1, 2,
                     and 3 pleckstrin homology (PH) domain; cd13248"
                     /db_xref="CDD:270068"
     Site            order(70,72..73,80,82,93,136)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270068"
     Region          <612..>761
                     /region_name="COG4913"
                     /note="Uncharacterized conserved protein, contains a
                     C-terminal ATPase domain [Function unknown]"
                     /db_xref="CDD:443941"
     CDS             1..1166
                     /gene="PLEKHA5"
                     /coded_by="XM_054057525.1:236..3736"
                     /db_xref="GeneID:104065614"
ORIGIN      
        1 mtseekkerp vsmlceatny nltsdyaahp mspvgrtsrs skkvhnfgkr snsikrnpna
       61 pvvrrgwlyk qdstgmklwk krwfvlsdlc lfyyrdekee gilgsillps fqisvlsped
      121 hinrkyafka ahpnmrtyyf ctdtgkemel wmkamtdaal vqtepvkrve klapentphr
      181 eannisnhrv likpeaqnnq rnkevnkhee kkaleaekyg fqkvgqdkpl tkinsvklnp
      241 lgsdyrtlpi ttiqaghfrs vhlngsenka vgvvladtgd gghdaiqshl eservmqrtn
      301 smlqleqwik vqrgkgqeee trgviayqtl prnmpshrpq vlprypegyr tlprnsktrp
      361 eslcsvtpsa ydraigpvta eekrrsmrdd tmwqlyewqq rqfynkqttl trhstisspk
      421 tminisdqtm hsiptspshg siagfqgysp qrtyrsevss pvqrgdvtid rrhrthhakh
      481 vfvpdrrsmp aglslqpvtp qslqgktpee ltllliklrr qqaelssire htlaqlmqlk
      541 leasspknei lshhlqrnai yldhqmkene plitmvhtmi ensalrpqly qqlsqeecrg
      601 tlykyrteel didaklsrlc eqdkvvqale eklqqlhkek ytleqallsa sqeiemnadn
      661 paaiqnvvlq rddlqnglls tcrevsrata elerawrdye kleydvtvtr nhmqeqldrl
      721 geiqtesagi qraqiqkelw riqdvmegls khkqqrsssd agimgsrtfs aikykneeee
      781 vvpprpplpr sydftehlpi ipplpsdsss llcysrgpvh lpeekkmhqv qgyqrngsyc
      841 gpdyrlykse pelttvaevd esngeekieq isesestakg shfpvgvvpp rtksptpess
      901 tiasyvtlrk nkkmdlrter prsaveqlcl aestrprmtv eeqmerikrh qqaclrekrk
      961 glniigisdq spsqslsfvr dnpfklaqnr kkddnvfsnm kelesisken nlkqnneipg
     1021 eeiaqlkhdg eqeynsgftk eltktddlls dayvvsdske vsneekaeke kknkleekrd
     1081 sdislqsvtt vtnhkpktss eeseivsvqe qegimssfel eaqsskgnqa ttvkslpssp
     1141 esslspapst qtqltegshf itngfc
//
LOCUS       XP_053913506            1166 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology domain-containing family A member 5 isoform X7
            [Cuculus canorus].
ACCESSION   XP_053913506
VERSION     XP_053913506.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057531.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1166
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1166
                     /product="pleckstrin homology domain-containing family A
                     member 5 isoform X7"
                     /calculated_mol_wt=132941
     Region          56..159
                     /region_name="PH_PEPP1_2_3"
                     /note="Phosphoinositol 3-phosphate binding proteins 1, 2,
                     and 3 pleckstrin homology (PH) domain; cd13248"
                     /db_xref="CDD:270068"
     Site            order(70,72..73,80,82,93,136)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270068"
     Region          <612..>761
                     /region_name="COG4913"
                     /note="Uncharacterized conserved protein, contains a
                     C-terminal ATPase domain [Function unknown]"
                     /db_xref="CDD:443941"
     CDS             1..1166
                     /gene="PLEKHA5"
                     /coded_by="XM_054057531.1:117..3617"
                     /db_xref="GeneID:104065614"
ORIGIN      
        1 mtseekkerp vsmlceatny nltsdyaahp mspvgrtsrs skkvhnfgkr snsikrnpna
       61 pvvrrgwlyk qdstgmklwk krwfvlsdlc lfyyrdekee gilgsillps fqisvlsped
      121 hinrkyafka ahpnmrtyyf ctdtgkemel wmkamtdaal vqtepvkrve klapentphr
      181 eannisnhrv likpeaqnnq rnkevnkhee kkaleaekyg fqkvgqdkpl tkinsvklnp
      241 lgsdyrtlpi ttiqaghfrs vhlngsenka vgvvladtgd gghdaiqshl eservmqrtn
      301 smlqleqwik vqrgkgqeee trgviayqtl prnmpshrpq vlprypegyr tlprnsktrp
      361 eslcsvtpsa ydraigpvta eekrrsmrdd tmwqlyewqq rqfynkqttl trhstisspk
      421 tminisdqtm hsiptspshg siagfqgysp qrtyrsevss pvqrgdvtid rrhrthhakh
      481 vfvpdrrsmp aglslqpvtp qslqgktpee ltllliklrr qqaelssire htlaqlmqlk
      541 leasspknei lshhlqrnai yldhqmkene plitmvhtmi ensalrpqly qqlsqeecrg
      601 tlykyrteel didaklsrlc eqdkvvqale eklqqlhkek ytleqallsa sqeiemnadn
      661 paaiqnvvlq rddlqnglls tcrevsrata elerawrdye kleydvtvtr nhmqeqldrl
      721 geiqtesagi qraqiqkelw riqdvmegls khkqqrsssd agimgsrtfs aikykneeee
      781 vvpprpplpr sydftehlpi ipplpsdsss llcysrgpvh lpeekkmhqv qgyqrngsyc
      841 gpdyrlykse pelttvaevd esngeekieq isesestakg shfpvgvvpp rtksptpess
      901 tiasyvtlrk nkkmdlrter prsaveqlcl aestrprmtv eeqmerikrh qqaclrekrk
      961 glniigisdq spsqslsfvr dnpfklaqnr kkddnvfsnm kelesisken nlkqnneipg
     1021 eeiaqlkhdg eqeynsgftk eltktddlls dayvvsdske vsneekaeke kknkleekrd
     1081 sdislqsvtt vtnhkpktss eeseivsvqe qegimssfel eaqsskgnqa ttvkslpssp
     1141 esslspapst qtqltegshf itngfc
//
LOCUS       XP_053913512            1163 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology domain-containing family A member 5 isoform X11
            [Cuculus canorus].
ACCESSION   XP_053913512
VERSION     XP_053913512.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057537.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1163
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1163
                     /product="pleckstrin homology domain-containing family A
                     member 5 isoform X11"
                     /calculated_mol_wt=132140
     Region          15..44
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          60..89
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          166..269
                     /region_name="PH_PEPP1_2_3"
                     /note="Phosphoinositol 3-phosphate binding proteins 1, 2,
                     and 3 pleckstrin homology (PH) domain; cd13248"
                     /db_xref="CDD:270068"
     Site            order(180,182..183,190,192,203,246)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270068"
     Region          <581..>735
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..1163
                     /gene="PLEKHA5"
                     /coded_by="XM_054057537.1:60..3551"
                     /db_xref="GeneID:104065614"
ORIGIN      
        1 maapaelsve rlralpnsws ygisqggrvf fineeakstt wlhpltgeav vtghrrsadl
       61 ptgweeaytf egaryyvnhn erkvtckhpv tgqpsqdnci fvvneqtaaa mtseekkerp
      121 vsmlceatny nltsdyaahp mspvgrtsrs skkvhnfgkr snsikrnpna pvvrrgwlyk
      181 qdstgmklwk krwfvlsdlc lfyyrdekee gilgsillps fqisvlsped hinrkyafka
      241 ahpnmrtyyf ctdtgkemel wmkamtdaal vqtepvkrve klapentphr eannisnhrv
      301 likpeaqnnq rnkevnkhee kkaleaekyg fqkvgqdkpl tkinsvklnp lgsdyrtlpi
      361 ttiqaghfrs vhlngsenka vgvvladtgd gghdaiqshl eservmqrtn smlqleqwik
      421 vqrgkgqeee trgviayqtl prnmpshrpq vlprypegyr tlprnsktrp eslcsvtpsa
      481 ydraigpvta eekrrsmrdd tmwqlyewqq rqfynkqttl trhstisspk tminisdqtm
      541 hsiptspshg siagfqgysp qrtyrsevss pvqrgdvtid rrhrthhakl sqeecrgtly
      601 kyrteeldid aklsrlceqd kvvqaleekl qqlhkekytl eqallsasqe iemnadnpaa
      661 iqnvvlqrdd lqngllstcr evsrataele rawrdyekle ydvtvtrnhm qeqldrlgei
      721 qtesagiqra qiqkelwriq dvmeglskhk qqrsssdagi mgsrtfsaik ykneeeevvp
      781 prpplprsyd ftehlpiipp lpsdsssllc ysrgpvhlpe ekkmhqvqgy qrngsycgpd
      841 yrlyksepel ttvaevdesn geekieqise sestakgshf pvgvvpprtk sptpesstia
      901 syvtlrknkk mdlrterprs aveqlclaes trprmtveeq merikrhqqa clrekrkgln
      961 iigisdqsps qslsfvrdnp fklaqnrkkd dnvfsnmkel esiskennlk qnneipgeei
     1021 aqlkhdgeqe ynsgftkelt ktddllsday vvsdskevsn eekaekekkn kleekrdsdi
     1081 slqsvttvtn hkpktssees eivsvqeqeg imssfeleaq sskgnqattv kslpsspess
     1141 lspapstqtq ltegshfitn gfc
//
LOCUS       XP_053913521            1128 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology domain-containing family A member 5 isoform X12
            [Cuculus canorus].
ACCESSION   XP_053913521
VERSION     XP_053913521.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057546.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1128
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1128
                     /product="pleckstrin homology domain-containing family A
                     member 5 isoform X12"
                     /calculated_mol_wt=127984
     Region          15..44
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          60..89
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          166..269
                     /region_name="PH_PEPP1_2_3"
                     /note="Phosphoinositol 3-phosphate binding proteins 1, 2,
                     and 3 pleckstrin homology (PH) domain; cd13248"
                     /db_xref="CDD:270068"
     Site            order(180,182..183,190,192,203,246)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270068"
     Region          <611..>763
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..1128
                     /gene="PLEKHA5"
                     /coded_by="XM_054057546.1:60..3446"
                     /db_xref="GeneID:104065614"
ORIGIN      
        1 maapaelsve rlralpnsws ygisqggrvf fineeakstt wlhpltgeav vtghrrsadl
       61 ptgweeaytf egaryyvnhn erkvtckhpv tgqpsqdnci fvvneqtaaa mtseekkerp
      121 vsmlceatny nltsdyaahp mspvgrtsrs skkvhnfgkr snsikrnpna pvvrrgwlyk
      181 qdstgmklwk krwfvlsdlc lfyyrdekee gilgsillps fqisvlsped hinrkyafka
      241 ahpnmrtyyf ctdtgkemel wmkamtdaal vqtepvkrve klapentphr eannisnhrv
      301 likpeaqnnq rnkevnkhee kkaleaekyg fqkvgqdkpl tkinsvklnp lgsdyrtlpi
      361 ttiqaghfrs vhlngsenka vgvvladtgd gghdaiqshl eservmqrtn smlqleqwik
      421 vqrgkgqeee trgviayqtl prnmpshrpq vlprypegyr tlprnsktrp eslcsvtpsa
      481 ydraigpvta eekrrsmrdd tmwqlyewqq rqfynkqttl trhstisspk tminisdqtm
      541 hsiptspshg siagfqgysp qrtyrsevss pvqrgdvtid rrhrthhakh vfvpdrrsmp
      601 aglslqpvtp qslqgktlsq eecrgtlyky rteeldidak lsrlceqdkv vqaleeklqq
      661 lhkekytleq allsasqeie mnadnpaaiq nvvlqrddlq ngllstcrev srataelera
      721 wrdyekleyd vtvtrnhmqe qldrlgeiqt esagiqraqi qkelwriqdv meglskhkqq
      781 rsssdagimg srtfsaikyk negpdyrlyk sepelttvae vdesngeeki eqisesesta
      841 kgshfpvgvv pprtksptpe sstiasyvtl rknkkmdlrt erprsaveql claestrprm
      901 tveeqmerik rhqqaclrek rkglniigis dqspsqslsf vrdnpfklaq nrkkddnvfs
      961 nmkelesisk ennlkqnnei pgeeiaqlkh dgeqeynsgf tkeltktddl lsdayvvsds
     1021 kevsneekae kekknkleek rdsdislqsv ttvtnhkpkt sseeseivsv qeqegimssf
     1081 eleaqsskgn qattvkslps spesslspap stqtqltegs hfitngfc
//
LOCUS       XP_053913529            1100 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology domain-containing family A member 5 isoform X13
            [Cuculus canorus].
ACCESSION   XP_053913529
VERSION     XP_053913529.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057554.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1100
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1100
                     /product="pleckstrin homology domain-containing family A
                     member 5 isoform X13"
                     /calculated_mol_wt=124955
     Region          15..44
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          60..89
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          166..269
                     /region_name="PH_PEPP1_2_3"
                     /note="Phosphoinositol 3-phosphate binding proteins 1, 2,
                     and 3 pleckstrin homology (PH) domain; cd13248"
                     /db_xref="CDD:270068"
     Site            order(180,182..183,190,192,203,246)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270068"
     Region          <581..>735
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..1100
                     /gene="PLEKHA5"
                     /coded_by="XM_054057554.1:60..3362"
                     /db_xref="GeneID:104065614"
ORIGIN      
        1 maapaelsve rlralpnsws ygisqggrvf fineeakstt wlhpltgeav vtghrrsadl
       61 ptgweeaytf egaryyvnhn erkvtckhpv tgqpsqdnci fvvneqtaaa mtseekkerp
      121 vsmlceatny nltsdyaahp mspvgrtsrs skkvhnfgkr snsikrnpna pvvrrgwlyk
      181 qdstgmklwk krwfvlsdlc lfyyrdekee gilgsillps fqisvlsped hinrkyafka
      241 ahpnmrtyyf ctdtgkemel wmkamtdaal vqtepvkrve klapentphr eannisnhrv
      301 likpeaqnnq rnkevnkhee kkaleaekyg fqkvgqdkpl tkinsvklnp lgsdyrtlpi
      361 ttiqaghfrs vhlngsenka vgvvladtgd gghdaiqshl eservmqrtn smlqleqwik
      421 vqrgkgqeee trgviayqtl prnmpshrpq vlprypegyr tlprnsktrp eslcsvtpsa
      481 ydraigpvta eekrrsmrdd tmwqlyewqq rqfynkqttl trhstisspk tminisdqtm
      541 hsiptspshg siagfqgysp qrtyrsevss pvqrgdvtid rrhrthhakl sqeecrgtly
      601 kyrteeldid aklsrlceqd kvvqaleekl qqlhkekytl eqallsasqe iemnadnpaa
      661 iqnvvlqrdd lqngllstcr evsrataele rawrdyekle ydvtvtrnhm qeqldrlgei
      721 qtesagiqra qiqkelwriq dvmeglskhk qqrsssdagi mgsrtfsaik yknegpdyrl
      781 yksepelttv aevdesngee kieqiseses takgshfpvg vvpprtkspt pesstiasyv
      841 tlrknkkmdl rterprsave qlclaestrp rmtveeqmer ikrhqqaclr ekrkglniig
      901 isdqspsqsl sfvrdnpfkl aqnrkkddnv fsnmkelesi skennlkqnn eipgeeiaql
      961 khdgeqeyns gftkeltktd dllsdayvvs dskevsneek aekekknkle ekrdsdislq
     1021 svttvtnhkp ktsseeseiv svqeqegims sfeleaqssk gnqattvksl psspesslsp
     1081 apstqtqlte gshfitngfc
//
LOCUS       XP_053913544             684 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology domain-containing family A member 5 isoform X14
            [Cuculus canorus].
ACCESSION   XP_053913544
VERSION     XP_053913544.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057569.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..684
                     /product="pleckstrin homology domain-containing family A
                     member 5 isoform X14"
                     /calculated_mol_wt=77905
     Region          15..44
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          60..89
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          166..269
                     /region_name="PH_PEPP1_2_3"
                     /note="Phosphoinositol 3-phosphate binding proteins 1, 2,
                     and 3 pleckstrin homology (PH) domain; cd13248"
                     /db_xref="CDD:270068"
     Site            order(180,182..183,190,192,203,246)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270068"
     CDS             1..684
                     /gene="PLEKHA5"
                     /coded_by="XM_054057569.1:62..2116"
                     /db_xref="GeneID:104065614"
ORIGIN      
        1 maapaelsve rlralpnsws ygisqggrvf fineeakstt wlhpltgeav vtghrrsadl
       61 ptgweeaytf egaryyvnhn erkvtckhpv tgqpsqdnci fvvneqtaaa mtseekkerp
      121 vsmlceatny nltsdyaahp mspvgrtsrs skkvhnfgkr snsikrnpna pvvrrgwlyk
      181 qdstgmklwk krwfvlsdlc lfyyrdekee gilgsillps fqisvlsped hinrkyafka
      241 ahpnmrtyyf ctdtgkemel wmkamtdaal vqtepvkrve klapentphr eannisnhrv
      301 likpeaqnnq rnkevnkhee kkaleaekyg fqkvgqdkpl tkinsvklnp lgsdyrtlpi
      361 ttiqaghfrs vhlngsenka vgvvladtgd gghdaiqshl eservmqrtn smlqleqwik
      421 vqrgkgqeee trgviayqtl prnmpshrpq vlprypegyr tlprnsktrp eslcsvtpsa
      481 ydraigpvta eekrrsmrdd tmwqlyewqq rqfynkqttl trhstisspk tminisdqtm
      541 hsiptspshg siagfqgysp qrtyrsevss pvqrgdvtid rrhrthhakh vfvpdrrsmp
      601 aglslqpvtp qslqgktpee ltllliklrr qqaelssire htlaqlmqlk leasspknei
      661 lshhlqrnai yldhqcrlsn laml
//
LOCUS       XP_053913553            1210 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology domain-containing family A member 5 isoform X15
            [Cuculus canorus].
ACCESSION   XP_053913553
VERSION     XP_053913553.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057578.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1210
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1210
                     /product="pleckstrin homology domain-containing family A
                     member 5 isoform X15"
                     /calculated_mol_wt=137658
     Region          15..44
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          60..89
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          166..269
                     /region_name="PH_PEPP1_2_3"
                     /note="Phosphoinositol 3-phosphate binding proteins 1, 2,
                     and 3 pleckstrin homology (PH) domain; cd13248"
                     /db_xref="CDD:270068"
     Site            order(180,182..183,190,192,203,246)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270068"
     Region          693..>873
                     /region_name="YhaN"
                     /note="Uncharacterized conserved protein YhaN, contains
                     AAA domain [Function unknown]; COG4717"
                     /db_xref="CDD:443752"
     CDS             1..1210
                     /gene="PLEKHA5"
                     /coded_by="XM_054057578.1:60..3692"
                     /db_xref="GeneID:104065614"
ORIGIN      
        1 maapaelsve rlralpnsws ygisqggrvf fineeakstt wlhpltgeav vtghrrsadl
       61 ptgweeaytf egaryyvnhn erkvtckhpv tgqpsqdnci fvvneqtaaa mtseekkerp
      121 vsmlceatny nltsdyaahp mspvgrtsrs skkvhnfgkr snsikrnpna pvvrrgwlyk
      181 qdstgmklwk krwfvlsdlc lfyyrdekee gilgsillps fqisvlsped hinrkyafka
      241 ahpnmrtyyf ctdtgkemel wmkamtdaal vqtepvkrve klapentphr eannisnhrv
      301 likpeaqnnq rnkevnkhee kkaleaekyg fqkvgqdkpl tkinsvklnp lgsdyrtlpi
      361 ttiqaghfrs vhlngsenka vgvvladtgd gghdaiqshl eservmqrtn smlqleqwik
      421 vqrgkgqeee trgviayqtl prnmpshrpq vlprypegyr tlprnsktrp eslcsvtpsa
      481 ydraigpvta eekrrsmrdd tmwqlyewqq rqfynkqttl trhstisspk tminisdqtm
      541 hsiptspshg siagfqgysp qrtyrsevss pvqrgdvtid rrhrthhakh vfvpdrrsmp
      601 aglslqpvtp qslqgktpee ltllliklrr qqaelssire htlaqlmqlk leasspknei
      661 lshhlqrnai yldhqmkene plitmvhtmi ensalrpqly qqlsqeecrg tlykyrteel
      721 didaklsrlc eqdkvvqale eklqqlhkek ytleqallsa sqeiemnadn paaiqnvvlq
      781 rddlqnglls tcrevsrata elerawrdye kleydvtvtr nhmqeqldrl geiqtesagi
      841 qraqiqkelw riqdvmegls khkqqrsssd agimgsrtfs aikyknegpd yrlyksepel
      901 ttvaevdesn geekieqise sestakgshf pvgvvpprtk sptpesstia syvtlrknkk
      961 mdlrterprs aveqlclaes trprmtveeq merikrhqqa clrekrkgln iigisdqsps
     1021 qslsfvrdnp fklaqnrkkd dnvfsnmkel esiskennlk qnneipgeei aqlkhdgeqe
     1081 ynsgftkelt ktddllsday vvsdskevsn eekaekekkn kleekrdsdi slqsvttvtn
     1141 hkpktssees eivsvqeqeg imssfeleaq sskgnqattv kslpsspess lspapstqtq
     1201 ltegshfmcv
//
LOCUS       XP_053913562            1188 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology domain-containing family A member 5 isoform X16
            [Cuculus canorus].
ACCESSION   XP_053913562
VERSION     XP_053913562.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057587.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1188
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1188
                     /product="pleckstrin homology domain-containing family A
                     member 5 isoform X16"
                     /calculated_mol_wt=134867
     Region          15..44
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          60..89
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          166..269
                     /region_name="PH_PEPP1_2_3"
                     /note="Phosphoinositol 3-phosphate binding proteins 1, 2,
                     and 3 pleckstrin homology (PH) domain; cd13248"
                     /db_xref="CDD:270068"
     Site            order(180,182..183,190,192,203,246)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270068"
     Region          <611..>763
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..1188
                     /gene="PLEKHA5"
                     /coded_by="XM_054057587.1:60..3626"
                     /db_xref="GeneID:104065614"
ORIGIN      
        1 maapaelsve rlralpnsws ygisqggrvf fineeakstt wlhpltgeav vtghrrsadl
       61 ptgweeaytf egaryyvnhn erkvtckhpv tgqpsqdnci fvvneqtaaa mtseekkerp
      121 vsmlceatny nltsdyaahp mspvgrtsrs skkvhnfgkr snsikrnpna pvvrrgwlyk
      181 qdstgmklwk krwfvlsdlc lfyyrdekee gilgsillps fqisvlsped hinrkyafka
      241 ahpnmrtyyf ctdtgkemel wmkamtdaal vqtepvkrve klapentphr eannisnhrv
      301 likpeaqnnq rnkevnkhee kkaleaekyg fqkvgqdkpl tkinsvklnp lgsdyrtlpi
      361 ttiqaghfrs vhlngsenka vgvvladtgd gghdaiqshl eservmqrtn smlqleqwik
      421 vqrgkgqeee trgviayqtl prnmpshrpq vlprypegyr tlprnsktrp eslcsvtpsa
      481 ydraigpvta eekrrsmrdd tmwqlyewqq rqfynkqttl trhstisspk tminisdqtm
      541 hsiptspshg siagfqgysp qrtyrsevss pvqrgdvtid rrhrthhakh vfvpdrrsmp
      601 aglslqpvtp qslqgktlsq eecrgtlyky rteeldidak lsrlceqdkv vqaleeklqq
      661 lhkekytleq allsasqeie mnadnpaaiq nvvlqrddlq ngllstcrev srataelera
      721 wrdyekleyd vtvtrnhmqe qldrlgeiqt esagiqraqi qkelwriqdv meglskhkqq
      781 rsssdagimg srtfsaikyk neeeevvppr pplprsydft ehlpiipplp sdsssllcys
      841 rgpvhlpeek kmhqvqgyqr ngsycgpdyr lyksepeltt vaevdesnge ekieqisese
      901 stakgshfpv gvvpprtksp tpesstiasy vtlrknkkmd lrterprsav eqlclaestr
      961 prmtveeqme rikrhqqacl rekrkglnii gisdqspsqs lsfvrdnpfk laqnrkkddn
     1021 vfsnmkeles iskennlkqn neipgeeiaq lkhdgeqeyn sgftkeltkt ddllsdayvv
     1081 sdskevsnee kaekekknkl eekrdsdisl qsvttvtnhk pktsseesei vsvqeqegim
     1141 ssfeleaqss kgnqattvks lpsspessls papstqtqlt egshfmcv
//
LOCUS       XP_053913572            1183 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology domain-containing family A member 5 isoform X17
            [Cuculus canorus].
ACCESSION   XP_053913572
VERSION     XP_053913572.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057597.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1183
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1183
                     /product="pleckstrin homology domain-containing family A
                     member 5 isoform X17"
                     /calculated_mol_wt=134461
     Region          15..44
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          60..89
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          166..269
                     /region_name="PH_PEPP1_2_3"
                     /note="Phosphoinositol 3-phosphate binding proteins 1, 2,
                     and 3 pleckstrin homology (PH) domain; cd13248"
                     /db_xref="CDD:270068"
     Site            order(180,182..183,190,192,203,246)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270068"
     Region          614..>803
                     /region_name="YhaN"
                     /note="Uncharacterized conserved protein YhaN, contains
                     AAA domain [Function unknown]; COG4717"
                     /db_xref="CDD:443752"
     CDS             1..1183
                     /gene="PLEKHA5"
                     /coded_by="XM_054057597.1:60..3611"
                     /db_xref="GeneID:104065614"
ORIGIN      
        1 maapaelsve rlralpnsws ygisqggrvf fineeakstt wlhpltgeav vtghrrsadl
       61 ptgweeaytf egaryyvnhn erkvtckhpv tgqpsqdnci fvvneqtaaa mtseekkerp
      121 vsmlceatny nltsdyaahp mspvgrtsrs skkvhnfgkr snsikrnpna pvvrrgwlyk
      181 qdstgmklwk krwfvlsdlc lfyyrdekee gilgsillps fqisvlsped hinrkyafka
      241 ahpnmrtyyf ctdtgkemel wmkamtdaal vqtepvkrve klapentphr eannisnhrv
      301 likpeaqnnq rnkevnkhee kkaleaekyg fqkvgqdkpl tkinsvklnp lgsdyrtlpi
      361 ttiqaghfrs vhlngsenka vgvvladtgd gghdaiqshl eservmqrtn smlqleqwik
      421 vqrgkgqeee trgviayqtl prnmpshrpq vlprypegyr tlprnsktrp eslcsvtpsa
      481 ydraigpvta eekrrsmrdd tmwqlyewqq rqfynkqttl trhstisspk tminisdqtm
      541 hsiptspshg siagfqgysp qrtyrsevss pvqrgdvtid rrhrthhakh vfvpdrrsmp
      601 aglslqpvtp qslqgktpee ltllliklrr qqaelssire htlaqlmqlk leasspknei
      661 lshhlqrnai yldhqlsqee crgtlykyrt eeldidakls rlceqdkvvq aleeklqqlh
      721 kekytleqal lsasqeiemn adnpaaiqnv vlqrddlqng llstcrevsr ataelerawr
      781 dyekleydvt vtrnhmqeql drlgeiqtes agiqraqiqk elwriqdvme glskhkqqrs
      841 ssdagimgsr tfsaikykne gpdyrlykse pelttvaevd esngeekieq isesestakg
      901 shfpvgvvpp rtksptpess tiasyvtlrk nkkmdlrter prsaveqlcl aestrprmtv
      961 eeqmerikrh qqaclrekrk glniigisdq spsqslsfvr dnpfklaqnr kkddnvfsnm
     1021 kelesisken nlkqnneipg eeiaqlkhdg eqeynsgftk eltktddlls dayvvsdske
     1081 vsneekaeke kknkleekrd sdislqsvtt vtnhkpktss eeseivsvqe qegimssfel
     1141 eaqsskgnqa ttvkslpssp esslspapst qtqltegshf mcv
//
LOCUS       XP_053913581            1125 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology domain-containing family A member 5 isoform X18
            [Cuculus canorus].
ACCESSION   XP_053913581
VERSION     XP_053913581.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057606.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1125
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1125
                     /product="pleckstrin homology domain-containing family A
                     member 5 isoform X18"
                     /calculated_mol_wt=127682
     Region          15..44
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          60..89
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          166..269
                     /region_name="PH_PEPP1_2_3"
                     /note="Phosphoinositol 3-phosphate binding proteins 1, 2,
                     and 3 pleckstrin homology (PH) domain; cd13248"
                     /db_xref="CDD:270068"
     Site            order(180,182..183,190,192,203,246)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270068"
     Region          <611..>763
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..1125
                     /gene="PLEKHA5"
                     /coded_by="XM_054057606.1:60..3437"
                     /db_xref="GeneID:104065614"
ORIGIN      
        1 maapaelsve rlralpnsws ygisqggrvf fineeakstt wlhpltgeav vtghrrsadl
       61 ptgweeaytf egaryyvnhn erkvtckhpv tgqpsqdnci fvvneqtaaa mtseekkerp
      121 vsmlceatny nltsdyaahp mspvgrtsrs skkvhnfgkr snsikrnpna pvvrrgwlyk
      181 qdstgmklwk krwfvlsdlc lfyyrdekee gilgsillps fqisvlsped hinrkyafka
      241 ahpnmrtyyf ctdtgkemel wmkamtdaal vqtepvkrve klapentphr eannisnhrv
      301 likpeaqnnq rnkevnkhee kkaleaekyg fqkvgqdkpl tkinsvklnp lgsdyrtlpi
      361 ttiqaghfrs vhlngsenka vgvvladtgd gghdaiqshl eservmqrtn smlqleqwik
      421 vqrgkgqeee trgviayqtl prnmpshrpq vlprypegyr tlprnsktrp eslcsvtpsa
      481 ydraigpvta eekrrsmrdd tmwqlyewqq rqfynkqttl trhstisspk tminisdqtm
      541 hsiptspshg siagfqgysp qrtyrsevss pvqrgdvtid rrhrthhakh vfvpdrrsmp
      601 aglslqpvtp qslqgktlsq eecrgtlyky rteeldidak lsrlceqdkv vqaleeklqq
      661 lhkekytleq allsasqeie mnadnpaaiq nvvlqrddlq ngllstcrev srataelera
      721 wrdyekleyd vtvtrnhmqe qldrlgeiqt esagiqraqi qkelwriqdv meglskhkqq
      781 rsssdagimg srtfsaikyk negpdyrlyk sepelttvae vdesngeeki eqisesesta
      841 kgshfpvgvv pprtksptpe sstiasyvtl rknkkmdlrt erprsaveql claestrprm
      901 tveeqmerik rhqqaclrek rkglniigis dqspsqslsf vrdnpfklaq nrkkddnvfs
      961 nmkelesisk ennlkqnnei pgeeiaqlkh dgeqeynsgf tkeltktddl lsdayvvsds
     1021 kevsneekae kekknkleek rdsdislqsv ttvtnhkpkt sseeseivsv qeqegimssf
     1081 eleaqsskgn qattvkslps spesslspap stqtqltegs hfmcv
//
LOCUS       XP_053913589            1097 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology domain-containing family A member 5 isoform X19
            [Cuculus canorus].
ACCESSION   XP_053913589
VERSION     XP_053913589.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057614.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1097
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1097
                     /product="pleckstrin homology domain-containing family A
                     member 5 isoform X19"
                     /calculated_mol_wt=124652
     Region          15..44
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          60..89
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          166..269
                     /region_name="PH_PEPP1_2_3"
                     /note="Phosphoinositol 3-phosphate binding proteins 1, 2,
                     and 3 pleckstrin homology (PH) domain; cd13248"
                     /db_xref="CDD:270068"
     Site            order(180,182..183,190,192,203,246)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270068"
     Region          <581..>735
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..1097
                     /gene="PLEKHA5"
                     /coded_by="XM_054057614.1:60..3353"
                     /db_xref="GeneID:104065614"
ORIGIN      
        1 maapaelsve rlralpnsws ygisqggrvf fineeakstt wlhpltgeav vtghrrsadl
       61 ptgweeaytf egaryyvnhn erkvtckhpv tgqpsqdnci fvvneqtaaa mtseekkerp
      121 vsmlceatny nltsdyaahp mspvgrtsrs skkvhnfgkr snsikrnpna pvvrrgwlyk
      181 qdstgmklwk krwfvlsdlc lfyyrdekee gilgsillps fqisvlsped hinrkyafka
      241 ahpnmrtyyf ctdtgkemel wmkamtdaal vqtepvkrve klapentphr eannisnhrv
      301 likpeaqnnq rnkevnkhee kkaleaekyg fqkvgqdkpl tkinsvklnp lgsdyrtlpi
      361 ttiqaghfrs vhlngsenka vgvvladtgd gghdaiqshl eservmqrtn smlqleqwik
      421 vqrgkgqeee trgviayqtl prnmpshrpq vlprypegyr tlprnsktrp eslcsvtpsa
      481 ydraigpvta eekrrsmrdd tmwqlyewqq rqfynkqttl trhstisspk tminisdqtm
      541 hsiptspshg siagfqgysp qrtyrsevss pvqrgdvtid rrhrthhakl sqeecrgtly
      601 kyrteeldid aklsrlceqd kvvqaleekl qqlhkekytl eqallsasqe iemnadnpaa
      661 iqnvvlqrdd lqngllstcr evsrataele rawrdyekle ydvtvtrnhm qeqldrlgei
      721 qtesagiqra qiqkelwriq dvmeglskhk qqrsssdagi mgsrtfsaik yknegpdyrl
      781 yksepelttv aevdesngee kieqiseses takgshfpvg vvpprtkspt pesstiasyv
      841 tlrknkkmdl rterprsave qlclaestrp rmtveeqmer ikrhqqaclr ekrkglniig
      901 isdqspsqsl sfvrdnpfkl aqnrkkddnv fsnmkelesi skennlkqnn eipgeeiaql
      961 khdgeqeyns gftkeltktd dllsdayvvs dskevsneek aekekknkle ekrdsdislq
     1021 svttvtnhkp ktsseeseiv svqeqegims sfeleaqssk gnqattvksl psspesslsp
     1081 apstqtqlte gshfmcv
//
LOCUS       XP_053913596            1246 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology domain-containing family A member 5 isoform X20
            [Cuculus canorus].
ACCESSION   XP_053913596
VERSION     XP_053913596.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057621.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1246
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1246
                     /product="pleckstrin homology domain-containing family A
                     member 5 isoform X20"
                     /calculated_mol_wt=141646
     Region          15..44
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          60..89
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          166..269
                     /region_name="PH_PEPP1_2_3"
                     /note="Phosphoinositol 3-phosphate binding proteins 1, 2,
                     and 3 pleckstrin homology (PH) domain; cd13248"
                     /db_xref="CDD:270068"
     Site            order(180,182..183,190,192,203,246)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270068"
     Region          614..>803
                     /region_name="YhaN"
                     /note="Uncharacterized conserved protein YhaN, contains
                     AAA domain [Function unknown]; COG4717"
                     /db_xref="CDD:443752"
     CDS             1..1246
                     /gene="PLEKHA5"
                     /coded_by="XM_054057621.1:60..3800"
                     /db_xref="GeneID:104065614"
ORIGIN      
        1 maapaelsve rlralpnsws ygisqggrvf fineeakstt wlhpltgeav vtghrrsadl
       61 ptgweeaytf egaryyvnhn erkvtckhpv tgqpsqdnci fvvneqtaaa mtseekkerp
      121 vsmlceatny nltsdyaahp mspvgrtsrs skkvhnfgkr snsikrnpna pvvrrgwlyk
      181 qdstgmklwk krwfvlsdlc lfyyrdekee gilgsillps fqisvlsped hinrkyafka
      241 ahpnmrtyyf ctdtgkemel wmkamtdaal vqtepvkrve klapentphr eannisnhrv
      301 likpeaqnnq rnkevnkhee kkaleaekyg fqkvgqdkpl tkinsvklnp lgsdyrtlpi
      361 ttiqaghfrs vhlngsenka vgvvladtgd gghdaiqshl eservmqrtn smlqleqwik
      421 vqrgkgqeee trgviayqtl prnmpshrpq vlprypegyr tlprnsktrp eslcsvtpsa
      481 ydraigpvta eekrrsmrdd tmwqlyewqq rqfynkqttl trhstisspk tminisdqtm
      541 hsiptspshg siagfqgysp qrtyrsevss pvqrgdvtid rrhrthhakh vfvpdrrsmp
      601 aglslqpvtp qslqgktpee ltllliklrr qqaelssire htlaqlmqlk leasspknei
      661 lshhlqrnai yldhqlsqee crgtlykyrt eeldidakls rlceqdkvvq aleeklqqlh
      721 kekytleqal lsasqeiemn adnpaaiqnv vlqrddlqng llstcrevsr ataelerawr
      781 dyekleydvt vtrnhmqeql drlgeiqtes agiqraqiqk elwriqdvme glskhkqqrs
      841 ssdagimgsr tfsaikykne eeevvpprpp lprsydfteh lpiipplpsd sssllcysrg
      901 pvhlpeekkm hqvqgyqrng sycgpdyrly ksepelttva evdesngeek ieqisesest
      961 akgshfpvgv vpprtksptp esstiasyvt lrknkkmdlr terprsaveq lclaestrpr
     1021 mtveeqmeri krhqqaclre krkglniigi sdqspsqsls fvrdnpfkla qnrkkddnvf
     1081 snmkelesis kennlkqnne ipgeeiaqlk hdgeqeynsg ftkeltktdd llsdayvvsd
     1141 skevsneeka ekekknklee krdsdislqs vttvtnhkpk tsseeseivs vqeqegimss
     1201 feleaqsskg nqattvkslp sspesslspa pstqtqlteg shfmcv
//
LOCUS       XP_053913607            1165 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology domain-containing family A member 5 isoform X21
            [Cuculus canorus].
ACCESSION   XP_053913607
VERSION     XP_053913607.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057632.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1165
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1165
                     /product="pleckstrin homology domain-containing family A
                     member 5 isoform X21"
                     /calculated_mol_wt=132277
     Region          15..44
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          60..89
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          166..269
                     /region_name="PH_PEPP1_2_3"
                     /note="Phosphoinositol 3-phosphate binding proteins 1, 2,
                     and 3 pleckstrin homology (PH) domain; cd13248"
                     /db_xref="CDD:270068"
     Site            order(180,182..183,190,192,203,246)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270068"
     Region          <619..>803
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..1165
                     /gene="PLEKHA5"
                     /coded_by="XM_054057632.1:60..3557"
                     /db_xref="GeneID:104065614"
ORIGIN      
        1 maapaelsve rlralpnsws ygisqggrvf fineeakstt wlhpltgeav vtghrrsadl
       61 ptgweeaytf egaryyvnhn erkvtckhpv tgqpsqdnci fvvneqtaaa mtseekkerp
      121 vsmlceatny nltsdyaahp mspvgrtsrs skkvhnfgkr snsikrnpna pvvrrgwlyk
      181 qdstgmklwk krwfvlsdlc lfyyrdekee gilgsillps fqisvlsped hinrkyafka
      241 ahpnmrtyyf ctdtgkemel wmkamtdaal vqtepvkrve klapentphr eannisnhrv
      301 likpeaqnnq rnkevnkhee kkaleaekyg fqkvgqdkpl tkinsvklnp lgsdyrtlpi
      361 ttiqaghfrs vhlngsenka vgvvladtgd gghdaiqshl eservmqrtn smlqleqwik
      421 vqrgkgqeee trgviayqtl prnmpshrpq vlprypegyr tlprnsktrp eslcsvtpsa
      481 ydraigpvta eekrrsmrdd tmwqlyewqq rqfynkqttl trhstisspk tminisdqtm
      541 hsiptspshg siagfqgysp qrtyrsevss pvqrgdvtid rrhrthhakh vfvpdrrsmp
      601 aglslqpvtp qslqgktpee ltllliklrr qqaelssire htlaqlmqlk leasspklsq
      661 eecrgtlyky rteeldidak lsrlceqdkv vqaleeklqq lhkekytleq allsasqeie
      721 mnadnpaaiq nvvlqrddlq ngllstcrev srataelera wrdyekleyd vtvtrnhmqe
      781 qldrlgeiqt esagiqraqi qkelwriqdv meglskhkqq rsssdagimg srtfsaikyk
      841 negpdyrlyk sepelttvae vdesngeeki eqisesesta kgshfpvgvv pprtksptpe
      901 sstiasyvtl rknkkmdlrt erprsaveql claestrprm tveeqmerik rhqqaclrek
      961 rkglniigis dqspsqslsf vrdnpfklaq nrkkddnvfs nmkelesisk ennlkqnnei
     1021 pgeeiaqlkh dgeqeynsgf tkeltktddl lsdayvvsds kevsneekae kekknkleek
     1081 rdsdislqsv ttvtnhkpkt sseeseivsv qeqegimssf eleaqsskgn qattvkslps
     1141 spesslspap stqtqltegs hfmcv
//
LOCUS       XP_053913618             890 aa            linear   VRT 09-MAR-2023
DEFINITION  oxysterol-binding protein-related protein 8 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053913618
VERSION     XP_053913618.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057643.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..890
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..890
                     /product="oxysterol-binding protein-related protein 8
                     isoform X1"
                     /calculated_mol_wt=101040
     Region          143..272
                     /region_name="PH_OPR5_ORP8"
                     /note="Human Oxysterol binding protein related proteins 5
                     and 8 Pleckstrin homology (PH) domain; cd13286"
                     /db_xref="CDD:270103"
     Region          407..753
                     /region_name="Oxysterol_BP"
                     /note="Oxysterol-binding protein; pfam01237"
                     /db_xref="CDD:460126"
     CDS             1..890
                     /gene="OSBPL8"
                     /coded_by="XM_054057643.1:190..2862"
                     /db_xref="GeneID:104061135"
ORIGIN      
        1 metvpvdgev drnsqhgdnr dphgpstvvt nsdesqlltp gkmsqrqgke ayftptkell
       61 qpslspgtah shgfdkgkdd vsqskedtah smsksksesk lfngsekdis lssskltkke
      121 slkvqkknyr eekkratkel lstitdpsvi vmadwlkirg tlkswtklwc vlkpgvllvy
      181 ktpkngqwvg tvllnaceli erpskkdgfc fklfhpleqs iwaikgpkge avgsitqplp
      241 ssyliiraas esdgrcwmda lelalkcssl lkrtmiregk ehdlnssads thvslygllr
      301 annlhsgenl plndseierh hfkdqdmysd ksdkendhdh eesdndglgk seesdsdtse
      361 rqddsyidpe pidikettyv eqspeelgea geaaqtevvs eenksliwtl lkqvrpgmdl
      421 skvvlptfil eprsfldkls dyyyhadfls eaaleenayn rmkkvvkwyl sgfykkpkgl
      481 kkpynpilge tfrcmwihpr tnsktfyiae qvshhppisa fyvsnrkdgf clsgsilaks
      541 kfygnslsai ldgegrltfl nrgedyvmtm pyahckgily gtmtlelggt vnitcektgy
      601 satiefklkp flgnndsvnq isgkiklgke vlaileghwd sevtisekkt disetfwnpt
      661 sdikqrrlpr ytvkfeeqdd feseklwqqv trainnkdqt eatqekyvle eaqrrsaker
      721 klkgeewmck lfdqdsvtge whykyadtrp wdplndmiqf ekdgtiqtkv rhrtpmvnvp
      781 kikrkpagqk kgecgfsspe pdnqdssgse aqllkhntri rkkgadlgel qsaiesiket
      841 qedikrdima lrnrvtansp pvdyhflqfk hyvfillvvl lqliinflfk
//
LOCUS       XP_053913627             890 aa            linear   VRT 09-MAR-2023
DEFINITION  oxysterol-binding protein-related protein 8 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053913627
VERSION     XP_053913627.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057652.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..890
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..890
                     /product="oxysterol-binding protein-related protein 8
                     isoform X1"
                     /calculated_mol_wt=101040
     Region          143..272
                     /region_name="PH_OPR5_ORP8"
                     /note="Human Oxysterol binding protein related proteins 5
                     and 8 Pleckstrin homology (PH) domain; cd13286"
                     /db_xref="CDD:270103"
     Region          407..753
                     /region_name="Oxysterol_BP"
                     /note="Oxysterol-binding protein; pfam01237"
                     /db_xref="CDD:460126"
     CDS             1..890
                     /gene="OSBPL8"
                     /coded_by="XM_054057652.1:158..2830"
                     /db_xref="GeneID:104061135"
ORIGIN      
        1 metvpvdgev drnsqhgdnr dphgpstvvt nsdesqlltp gkmsqrqgke ayftptkell
       61 qpslspgtah shgfdkgkdd vsqskedtah smsksksesk lfngsekdis lssskltkke
      121 slkvqkknyr eekkratkel lstitdpsvi vmadwlkirg tlkswtklwc vlkpgvllvy
      181 ktpkngqwvg tvllnaceli erpskkdgfc fklfhpleqs iwaikgpkge avgsitqplp
      241 ssyliiraas esdgrcwmda lelalkcssl lkrtmiregk ehdlnssads thvslygllr
      301 annlhsgenl plndseierh hfkdqdmysd ksdkendhdh eesdndglgk seesdsdtse
      361 rqddsyidpe pidikettyv eqspeelgea geaaqtevvs eenksliwtl lkqvrpgmdl
      421 skvvlptfil eprsfldkls dyyyhadfls eaaleenayn rmkkvvkwyl sgfykkpkgl
      481 kkpynpilge tfrcmwihpr tnsktfyiae qvshhppisa fyvsnrkdgf clsgsilaks
      541 kfygnslsai ldgegrltfl nrgedyvmtm pyahckgily gtmtlelggt vnitcektgy
      601 satiefklkp flgnndsvnq isgkiklgke vlaileghwd sevtisekkt disetfwnpt
      661 sdikqrrlpr ytvkfeeqdd feseklwqqv trainnkdqt eatqekyvle eaqrrsaker
      721 klkgeewmck lfdqdsvtge whykyadtrp wdplndmiqf ekdgtiqtkv rhrtpmvnvp
      781 kikrkpagqk kgecgfsspe pdnqdssgse aqllkhntri rkkgadlgel qsaiesiket
      841 qedikrdima lrnrvtansp pvdyhflqfk hyvfillvvl lqliinflfk
//
LOCUS       XP_053913637             890 aa            linear   VRT 09-MAR-2023
DEFINITION  oxysterol-binding protein-related protein 8 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053913637
VERSION     XP_053913637.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057662.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..890
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..890
                     /product="oxysterol-binding protein-related protein 8
                     isoform X1"
                     /calculated_mol_wt=101040
     Region          143..272
                     /region_name="PH_OPR5_ORP8"
                     /note="Human Oxysterol binding protein related proteins 5
                     and 8 Pleckstrin homology (PH) domain; cd13286"
                     /db_xref="CDD:270103"
     Region          407..753
                     /region_name="Oxysterol_BP"
                     /note="Oxysterol-binding protein; pfam01237"
                     /db_xref="CDD:460126"
     CDS             1..890
                     /gene="OSBPL8"
                     /coded_by="XM_054057662.1:172..2844"
                     /db_xref="GeneID:104061135"
ORIGIN      
        1 metvpvdgev drnsqhgdnr dphgpstvvt nsdesqlltp gkmsqrqgke ayftptkell
       61 qpslspgtah shgfdkgkdd vsqskedtah smsksksesk lfngsekdis lssskltkke
      121 slkvqkknyr eekkratkel lstitdpsvi vmadwlkirg tlkswtklwc vlkpgvllvy
      181 ktpkngqwvg tvllnaceli erpskkdgfc fklfhpleqs iwaikgpkge avgsitqplp
      241 ssyliiraas esdgrcwmda lelalkcssl lkrtmiregk ehdlnssads thvslygllr
      301 annlhsgenl plndseierh hfkdqdmysd ksdkendhdh eesdndglgk seesdsdtse
      361 rqddsyidpe pidikettyv eqspeelgea geaaqtevvs eenksliwtl lkqvrpgmdl
      421 skvvlptfil eprsfldkls dyyyhadfls eaaleenayn rmkkvvkwyl sgfykkpkgl
      481 kkpynpilge tfrcmwihpr tnsktfyiae qvshhppisa fyvsnrkdgf clsgsilaks
      541 kfygnslsai ldgegrltfl nrgedyvmtm pyahckgily gtmtlelggt vnitcektgy
      601 satiefklkp flgnndsvnq isgkiklgke vlaileghwd sevtisekkt disetfwnpt
      661 sdikqrrlpr ytvkfeeqdd feseklwqqv trainnkdqt eatqekyvle eaqrrsaker
      721 klkgeewmck lfdqdsvtge whykyadtrp wdplndmiqf ekdgtiqtkv rhrtpmvnvp
      781 kikrkpagqk kgecgfsspe pdnqdssgse aqllkhntri rkkgadlgel qsaiesiket
      841 qedikrdima lrnrvtansp pvdyhflqfk hyvfillvvl lqliinflfk
//
LOCUS       XP_053913648             889 aa            linear   VRT 09-MAR-2023
DEFINITION  oxysterol-binding protein-related protein 8 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053913648
VERSION     XP_053913648.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057673.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..889
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..889
                     /product="oxysterol-binding protein-related protein 8
                     isoform X2"
                     /calculated_mol_wt=100911
     Region          142..271
                     /region_name="PH_OPR5_ORP8"
                     /note="Human Oxysterol binding protein related proteins 5
                     and 8 Pleckstrin homology (PH) domain; cd13286"
                     /db_xref="CDD:270103"
     Region          406..752
                     /region_name="Oxysterol_BP"
                     /note="Oxysterol-binding protein; pfam01237"
                     /db_xref="CDD:460126"
     CDS             1..889
                     /gene="OSBPL8"
                     /coded_by="XM_054057673.1:190..2859"
                     /db_xref="GeneID:104061135"
ORIGIN      
        1 metvpvdgev drnshgdnrd phgpstvvtn sdesqlltpg kmsqrqgkea yftptkellq
       61 pslspgtahs hgfdkgkddv sqskedtahs mskskseskl fngsekdisl ssskltkkes
      121 lkvqkknyre ekkratkell stitdpsviv madwlkirgt lkswtklwcv lkpgvllvyk
      181 tpkngqwvgt vllnacelie rpskkdgfcf klfhpleqsi waikgpkgea vgsitqplps
      241 syliiraase sdgrcwmdal elalkcssll krtmiregke hdlnssadst hvslygllra
      301 nnlhsgenlp lndseierhh fkdqdmysdk sdkendhdhe esdndglgks eesdsdtser
      361 qddsyidpep idikettyve qspeelgeag eaaqtevvse enksliwtll kqvrpgmdls
      421 kvvlptfile prsfldklsd yyyhadflse aaleenaynr mkkvvkwyls gfykkpkglk
      481 kpynpilget frcmwihprt nsktfyiaeq vshhppisaf yvsnrkdgfc lsgsilaksk
      541 fygnslsail dgegrltfln rgedyvmtmp yahckgilyg tmtlelggtv nitcektgys
      601 atiefklkpf lgnndsvnqi sgkiklgkev laileghwds evtisekktd isetfwnpts
      661 dikqrrlpry tvkfeeqddf eseklwqqvt rainnkdqte atqekyvlee aqrrsakerk
      721 lkgeewmckl fdqdsvtgew hykyadtrpw dplndmiqfe kdgtiqtkvr hrtpmvnvpk
      781 ikrkpagqkk gecgfsspep dnqdssgsea qllkhntrir kkgadlgelq saiesiketq
      841 edikrdimal rnrvtanspp vdyhflqfkh yvfillvvll qliinflfk
//
LOCUS       XP_053913660             889 aa            linear   VRT 09-MAR-2023
DEFINITION  oxysterol-binding protein-related protein 8 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053913660
VERSION     XP_053913660.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057685.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..889
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..889
                     /product="oxysterol-binding protein-related protein 8
                     isoform X2"
                     /calculated_mol_wt=100911
     Region          142..271
                     /region_name="PH_OPR5_ORP8"
                     /note="Human Oxysterol binding protein related proteins 5
                     and 8 Pleckstrin homology (PH) domain; cd13286"
                     /db_xref="CDD:270103"
     Region          406..752
                     /region_name="Oxysterol_BP"
                     /note="Oxysterol-binding protein; pfam01237"
                     /db_xref="CDD:460126"
     CDS             1..889
                     /gene="OSBPL8"
                     /coded_by="XM_054057685.1:158..2827"
                     /db_xref="GeneID:104061135"
ORIGIN      
        1 metvpvdgev drnshgdnrd phgpstvvtn sdesqlltpg kmsqrqgkea yftptkellq
       61 pslspgtahs hgfdkgkddv sqskedtahs mskskseskl fngsekdisl ssskltkkes
      121 lkvqkknyre ekkratkell stitdpsviv madwlkirgt lkswtklwcv lkpgvllvyk
      181 tpkngqwvgt vllnacelie rpskkdgfcf klfhpleqsi waikgpkgea vgsitqplps
      241 syliiraase sdgrcwmdal elalkcssll krtmiregke hdlnssadst hvslygllra
      301 nnlhsgenlp lndseierhh fkdqdmysdk sdkendhdhe esdndglgks eesdsdtser
      361 qddsyidpep idikettyve qspeelgeag eaaqtevvse enksliwtll kqvrpgmdls
      421 kvvlptfile prsfldklsd yyyhadflse aaleenaynr mkkvvkwyls gfykkpkglk
      481 kpynpilget frcmwihprt nsktfyiaeq vshhppisaf yvsnrkdgfc lsgsilaksk
      541 fygnslsail dgegrltfln rgedyvmtmp yahckgilyg tmtlelggtv nitcektgys
      601 atiefklkpf lgnndsvnqi sgkiklgkev laileghwds evtisekktd isetfwnpts
      661 dikqrrlpry tvkfeeqddf eseklwqqvt rainnkdqte atqekyvlee aqrrsakerk
      721 lkgeewmckl fdqdsvtgew hykyadtrpw dplndmiqfe kdgtiqtkvr hrtpmvnvpk
      781 ikrkpagqkk gecgfsspep dnqdssgsea qllkhntrir kkgadlgelq saiesiketq
      841 edikrdimal rnrvtanspp vdyhflqfkh yvfillvvll qliinflfk
//
LOCUS       XP_053913668             889 aa            linear   VRT 09-MAR-2023
DEFINITION  oxysterol-binding protein-related protein 8 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053913668
VERSION     XP_053913668.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057693.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..889
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..889
                     /product="oxysterol-binding protein-related protein 8
                     isoform X2"
                     /calculated_mol_wt=100911
     Region          142..271
                     /region_name="PH_OPR5_ORP8"
                     /note="Human Oxysterol binding protein related proteins 5
                     and 8 Pleckstrin homology (PH) domain; cd13286"
                     /db_xref="CDD:270103"
     Region          406..752
                     /region_name="Oxysterol_BP"
                     /note="Oxysterol-binding protein; pfam01237"
                     /db_xref="CDD:460126"
     CDS             1..889
                     /gene="OSBPL8"
                     /coded_by="XM_054057693.1:172..2841"
                     /db_xref="GeneID:104061135"
ORIGIN      
        1 metvpvdgev drnshgdnrd phgpstvvtn sdesqlltpg kmsqrqgkea yftptkellq
       61 pslspgtahs hgfdkgkddv sqskedtahs mskskseskl fngsekdisl ssskltkkes
      121 lkvqkknyre ekkratkell stitdpsviv madwlkirgt lkswtklwcv lkpgvllvyk
      181 tpkngqwvgt vllnacelie rpskkdgfcf klfhpleqsi waikgpkgea vgsitqplps
      241 syliiraase sdgrcwmdal elalkcssll krtmiregke hdlnssadst hvslygllra
      301 nnlhsgenlp lndseierhh fkdqdmysdk sdkendhdhe esdndglgks eesdsdtser
      361 qddsyidpep idikettyve qspeelgeag eaaqtevvse enksliwtll kqvrpgmdls
      421 kvvlptfile prsfldklsd yyyhadflse aaleenaynr mkkvvkwyls gfykkpkglk
      481 kpynpilget frcmwihprt nsktfyiaeq vshhppisaf yvsnrkdgfc lsgsilaksk
      541 fygnslsail dgegrltfln rgedyvmtmp yahckgilyg tmtlelggtv nitcektgys
      601 atiefklkpf lgnndsvnqi sgkiklgkev laileghwds evtisekktd isetfwnpts
      661 dikqrrlpry tvkfeeqddf eseklwqqvt rainnkdqte atqekyvlee aqrrsakerk
      721 lkgeewmckl fdqdsvtgew hykyadtrpw dplndmiqfe kdgtiqtkvr hrtpmvnvpk
      781 ikrkpagqkk gecgfsspep dnqdssgsea qllkhntrir kkgadlgelq saiesiketq
      841 edikrdimal rnrvtanspp vdyhflqfkh yvfillvvll qliinflfk
//
LOCUS       XP_053913675             889 aa            linear   VRT 09-MAR-2023
DEFINITION  oxysterol-binding protein-related protein 8 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053913675
VERSION     XP_053913675.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057700.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..889
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..889
                     /product="oxysterol-binding protein-related protein 8
                     isoform X2"
                     /calculated_mol_wt=100911
     Region          142..271
                     /region_name="PH_OPR5_ORP8"
                     /note="Human Oxysterol binding protein related proteins 5
                     and 8 Pleckstrin homology (PH) domain; cd13286"
                     /db_xref="CDD:270103"
     Region          406..752
                     /region_name="Oxysterol_BP"
                     /note="Oxysterol-binding protein; pfam01237"
                     /db_xref="CDD:460126"
     CDS             1..889
                     /gene="OSBPL8"
                     /coded_by="XM_054057700.1:82..2751"
                     /db_xref="GeneID:104061135"
ORIGIN      
        1 metvpvdgev drnshgdnrd phgpstvvtn sdesqlltpg kmsqrqgkea yftptkellq
       61 pslspgtahs hgfdkgkddv sqskedtahs mskskseskl fngsekdisl ssskltkkes
      121 lkvqkknyre ekkratkell stitdpsviv madwlkirgt lkswtklwcv lkpgvllvyk
      181 tpkngqwvgt vllnacelie rpskkdgfcf klfhpleqsi waikgpkgea vgsitqplps
      241 syliiraase sdgrcwmdal elalkcssll krtmiregke hdlnssadst hvslygllra
      301 nnlhsgenlp lndseierhh fkdqdmysdk sdkendhdhe esdndglgks eesdsdtser
      361 qddsyidpep idikettyve qspeelgeag eaaqtevvse enksliwtll kqvrpgmdls
      421 kvvlptfile prsfldklsd yyyhadflse aaleenaynr mkkvvkwyls gfykkpkglk
      481 kpynpilget frcmwihprt nsktfyiaeq vshhppisaf yvsnrkdgfc lsgsilaksk
      541 fygnslsail dgegrltfln rgedyvmtmp yahckgilyg tmtlelggtv nitcektgys
      601 atiefklkpf lgnndsvnqi sgkiklgkev laileghwds evtisekktd isetfwnpts
      661 dikqrrlpry tvkfeeqddf eseklwqqvt rainnkdqte atqekyvlee aqrrsakerk
      721 lkgeewmckl fdqdsvtgew hykyadtrpw dplndmiqfe kdgtiqtkvr hrtpmvnvpk
      781 ikrkpagqkk gecgfsspep dnqdssgsea qllkhntrir kkgadlgelq saiesiketq
      841 edikrdimal rnrvtanspp vdyhflqfkh yvfillvvll qliinflfk
//
LOCUS       XP_053913685             889 aa            linear   VRT 09-MAR-2023
DEFINITION  oxysterol-binding protein-related protein 8 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053913685
VERSION     XP_053913685.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057710.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..889
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..889
                     /product="oxysterol-binding protein-related protein 8
                     isoform X3"
                     /calculated_mol_wt=100971
     Region          142..271
                     /region_name="PH_OPR5_ORP8"
                     /note="Human Oxysterol binding protein related proteins 5
                     and 8 Pleckstrin homology (PH) domain; cd13286"
                     /db_xref="CDD:270103"
     Region          406..752
                     /region_name="Oxysterol_BP"
                     /note="Oxysterol-binding protein; pfam01237"
                     /db_xref="CDD:460126"
     CDS             1..889
                     /gene="OSBPL8"
                     /coded_by="XM_054057710.1:190..2859"
                     /db_xref="GeneID:104061135"
ORIGIN      
        1 metvpvdgev drnsqhgdnr dphgpsmvtn sdesqlltpg kmsqrqgkea yftptkellq
       61 pslspgtahs hgfdkgkddv sqskedtahs mskskseskl fngsekdisl ssskltkkes
      121 lkvqkknyre ekkratkell stitdpsviv madwlkirgt lkswtklwcv lkpgvllvyk
      181 tpkngqwvgt vllnacelie rpskkdgfcf klfhpleqsi waikgpkgea vgsitqplps
      241 syliiraase sdgrcwmdal elalkcssll krtmiregke hdlnssadst hvslygllra
      301 nnlhsgenlp lndseierhh fkdqdmysdk sdkendhdhe esdndglgks eesdsdtser
      361 qddsyidpep idikettyve qspeelgeag eaaqtevvse enksliwtll kqvrpgmdls
      421 kvvlptfile prsfldklsd yyyhadflse aaleenaynr mkkvvkwyls gfykkpkglk
      481 kpynpilget frcmwihprt nsktfyiaeq vshhppisaf yvsnrkdgfc lsgsilaksk
      541 fygnslsail dgegrltfln rgedyvmtmp yahckgilyg tmtlelggtv nitcektgys
      601 atiefklkpf lgnndsvnqi sgkiklgkev laileghwds evtisekktd isetfwnpts
      661 dikqrrlpry tvkfeeqddf eseklwqqvt rainnkdqte atqekyvlee aqrrsakerk
      721 lkgeewmckl fdqdsvtgew hykyadtrpw dplndmiqfe kdgtiqtkvr hrtpmvnvpk
      781 ikrkpagqkk gecgfsspep dnqdssgsea qllkhntrir kkgadlgelq saiesiketq
      841 edikrdimal rnrvtanspp vdyhflqfkh yvfillvvll qliinflfk
//
LOCUS       XP_053913693             888 aa            linear   VRT 09-MAR-2023
DEFINITION  oxysterol-binding protein-related protein 8 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053913693
VERSION     XP_053913693.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057718.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..888
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..888
                     /product="oxysterol-binding protein-related protein 8
                     isoform X4"
                     /calculated_mol_wt=100842
     Region          141..270
                     /region_name="PH_OPR5_ORP8"
                     /note="Human Oxysterol binding protein related proteins 5
                     and 8 Pleckstrin homology (PH) domain; cd13286"
                     /db_xref="CDD:270103"
     Region          405..751
                     /region_name="Oxysterol_BP"
                     /note="Oxysterol-binding protein; pfam01237"
                     /db_xref="CDD:460126"
     CDS             1..888
                     /gene="OSBPL8"
                     /coded_by="XM_054057718.1:190..2856"
                     /db_xref="GeneID:104061135"
ORIGIN      
        1 metvpvdgev drnshgdnrd phgpsmvtns desqlltpgk msqrqgkeay ftptkellqp
       61 slspgtahsh gfdkgkddvs qskedtahsm sksksesklf ngsekdisls sskltkkesl
      121 kvqkknyree kkratkells titdpsvivm adwlkirgtl kswtklwcvl kpgvllvykt
      181 pkngqwvgtv llnacelier pskkdgfcfk lfhpleqsiw aikgpkgeav gsitqplpss
      241 yliiraases dgrcwmdale lalkcssllk rtmiregkeh dlnssadsth vslygllran
      301 nlhsgenlpl ndseierhhf kdqdmysdks dkendhdhee sdndglgkse esdsdtserq
      361 ddsyidpepi dikettyveq speelgeage aaqtevvsee nksliwtllk qvrpgmdlsk
      421 vvlptfilep rsfldklsdy yyhadflsea aleenaynrm kkvvkwylsg fykkpkglkk
      481 pynpilgetf rcmwihprtn sktfyiaeqv shhppisafy vsnrkdgfcl sgsilakskf
      541 ygnslsaild gegrltflnr gedyvmtmpy ahckgilygt mtlelggtvn itcektgysa
      601 tiefklkpfl gnndsvnqis gkiklgkevl aileghwdse vtisekktdi setfwnptsd
      661 ikqrrlpryt vkfeeqddfe seklwqqvtr ainnkdqtea tqekyvleea qrrsakerkl
      721 kgeewmcklf dqdsvtgewh ykyadtrpwd plndmiqfek dgtiqtkvrh rtpmvnvpki
      781 krkpagqkkg ecgfsspepd nqdssgseaq llkhntrirk kgadlgelqs aiesiketqe
      841 dikrdimalr nrvtansppv dyhflqfkhy vfillvvllq liinflfk
//
LOCUS       XP_053913703             865 aa            linear   VRT 09-MAR-2023
DEFINITION  oxysterol-binding protein-related protein 8 isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053913703
VERSION     XP_053913703.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057728.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..865
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..865
                     /product="oxysterol-binding protein-related protein 8
                     isoform X5"
                     /calculated_mol_wt=98312
     Region          118..247
                     /region_name="PH_OPR5_ORP8"
                     /note="Human Oxysterol binding protein related proteins 5
                     and 8 Pleckstrin homology (PH) domain; cd13286"
                     /db_xref="CDD:270103"
     Region          382..728
                     /region_name="Oxysterol_BP"
                     /note="Oxysterol-binding protein; pfam01237"
                     /db_xref="CDD:460126"
     CDS             1..865
                     /gene="OSBPL8"
                     /coded_by="XM_054057728.1:72..2669"
                     /db_xref="GeneID:104061135"
ORIGIN      
        1 mkeegpvrrr fsscagissv fspradgrkl vrnasfggyn elspalpgfd kgkddvsqsk
       61 edtahsmsks ksesklfngs ekdislsssk ltkkeslkvq kknyreekkr atkellstit
      121 dpsvivmadw lkirgtlksw tklwcvlkpg vllvyktpkn gqwvgtvlln acelierpsk
      181 kdgfcfklfh pleqsiwaik gpkgeavgsi tqplpssyli iraasesdgr cwmdalelal
      241 kcssllkrtm iregkehdln ssadsthvsl ygllrannlh sgenlplnds eierhhfkdq
      301 dmysdksdke ndhdheesdn dglgkseesd sdtserqdds yidpepidik ettyveqspe
      361 elgeageaaq tevvseenks liwtllkqvr pgmdlskvvl ptfileprsf ldklsdyyyh
      421 adflseaale enaynrmkkv vkwylsgfyk kpkglkkpyn pilgetfrcm wihprtnskt
      481 fyiaeqvshh ppisafyvsn rkdgfclsgs ilakskfygn slsaildgeg rltflnrged
      541 yvmtmpyahc kgilygtmtl elggtvnitc ektgysatie fklkpflgnn dsvnqisgki
      601 klgkevlail eghwdsevti sekktdiset fwnptsdikq rrlprytvkf eeqddfesek
      661 lwqqvtrain nkdqteatqe kyvleeaqrr sakerklkge ewmcklfdqd svtgewhyky
      721 adtrpwdpln dmiqfekdgt iqtkvrhrtp mvnvpkikrk pagqkkgecg fsspepdnqd
      781 ssgseaqllk hntrirkkga dlgelqsaie siketqedik rdimalrnrv tansppvdyh
      841 flqfkhyvfi llvvllqlii nflfk
//
LOCUS       XP_053913713             863 aa            linear   VRT 09-MAR-2023
DEFINITION  oxysterol-binding protein-related protein 8 isoform X6 [Cuculus
            canorus].
ACCESSION   XP_053913713
VERSION     XP_053913713.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057738.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..863
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..863
                     /product="oxysterol-binding protein-related protein 8
                     isoform X6"
                     /calculated_mol_wt=98143
     Region          116..245
                     /region_name="PH_OPR5_ORP8"
                     /note="Human Oxysterol binding protein related proteins 5
                     and 8 Pleckstrin homology (PH) domain; cd13286"
                     /db_xref="CDD:270103"
     Region          380..726
                     /region_name="Oxysterol_BP"
                     /note="Oxysterol-binding protein; pfam01237"
                     /db_xref="CDD:460126"
     CDS             1..863
                     /gene="OSBPL8"
                     /coded_by="XM_054057738.1:99..2690"
                     /db_xref="GeneID:104061135"
ORIGIN      
        1 mvtnsdesql ltpgkmsqrq gkeayftptk ellqpslspg tahshgfdkg kddvsqsked
       61 tahsmsksks esklfngsek dislsssklt kkeslkvqkk nyreekkrat kellstitdp
      121 svivmadwlk irgtlkswtk lwcvlkpgvl lvyktpkngq wvgtvllnac elierpskkd
      181 gfcfklfhpl eqsiwaikgp kgeavgsitq plpssyliir aasesdgrcw mdalelalkc
      241 ssllkrtmir egkehdlnss adsthvslyg llrannlhsg enlplndsei erhhfkdqdm
      301 ysdksdkend hdheesdndg lgkseesdsd tserqddsyi dpepidiket tyveqspeel
      361 geageaaqte vvseenksli wtllkqvrpg mdlskvvlpt fileprsfld klsdyyyhad
      421 flseaaleen aynrmkkvvk wylsgfykkp kglkkpynpi lgetfrcmwi hprtnsktfy
      481 iaeqvshhpp isafyvsnrk dgfclsgsil akskfygnsl saildgegrl tflnrgedyv
      541 mtmpyahckg ilygtmtlel ggtvnitcek tgysatiefk lkpflgnnds vnqisgkikl
      601 gkevlaileg hwdsevtise kktdisetfw nptsdikqrr lprytvkfee qddfeseklw
      661 qqvtrainnk dqteatqeky vleeaqrrsa kerklkgeew mcklfdqdsv tgewhykyad
      721 trpwdplndm iqfekdgtiq tkvrhrtpmv nvpkikrkpa gqkkgecgfs spepdnqdss
      781 gseaqllkhn trirkkgadl gelqsaiesi ketqedikrd imalrnrvta nsppvdyhfl
      841 qfkhyvfill vvllqliinf lfk
//
LOCUS       XP_053913722             848 aa            linear   VRT 09-MAR-2023
DEFINITION  oxysterol-binding protein-related protein 8 isoform X7 [Cuculus
            canorus].
ACCESSION   XP_053913722
VERSION     XP_053913722.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057747.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..848
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..848
                     /product="oxysterol-binding protein-related protein 8
                     isoform X7"
                     /calculated_mol_wt=96541
     Region          101..230
                     /region_name="PH_OPR5_ORP8"
                     /note="Human Oxysterol binding protein related proteins 5
                     and 8 Pleckstrin homology (PH) domain; cd13286"
                     /db_xref="CDD:270103"
     Region          365..711
                     /region_name="Oxysterol_BP"
                     /note="Oxysterol-binding protein; pfam01237"
                     /db_xref="CDD:460126"
     CDS             1..848
                     /gene="OSBPL8"
                     /coded_by="XM_054057747.1:154..2700"
                     /db_xref="GeneID:104061135"
ORIGIN      
        1 msqrqgkeay ftptkellqp slspgtahsh gfdkgkddvs qskedtahsm sksksesklf
       61 ngsekdisls sskltkkesl kvqkknyree kkratkells titdpsvivm adwlkirgtl
      121 kswtklwcvl kpgvllvykt pkngqwvgtv llnacelier pskkdgfcfk lfhpleqsiw
      181 aikgpkgeav gsitqplpss yliiraases dgrcwmdale lalkcssllk rtmiregkeh
      241 dlnssadsth vslygllran nlhsgenlpl ndseierhhf kdqdmysdks dkendhdhee
      301 sdndglgkse esdsdtserq ddsyidpepi dikettyveq speelgeage aaqtevvsee
      361 nksliwtllk qvrpgmdlsk vvlptfilep rsfldklsdy yyhadflsea aleenaynrm
      421 kkvvkwylsg fykkpkglkk pynpilgetf rcmwihprtn sktfyiaeqv shhppisafy
      481 vsnrkdgfcl sgsilakskf ygnslsaild gegrltflnr gedyvmtmpy ahckgilygt
      541 mtlelggtvn itcektgysa tiefklkpfl gnndsvnqis gkiklgkevl aileghwdse
      601 vtisekktdi setfwnptsd ikqrrlpryt vkfeeqddfe seklwqqvtr ainnkdqtea
      661 tqekyvleea qrrsakerkl kgeewmcklf dqdsvtgewh ykyadtrpwd plndmiqfek
      721 dgtiqtkvrh rtpmvnvpki krkpagqkkg ecgfsspepd nqdssgseaq llkhntrirk
      781 kgadlgelqs aiesiketqe dikrdimalr nrvtansppv dyhflqfkhy vfillvvllq
      841 liinflfk
//
LOCUS       XP_053913731             798 aa            linear   VRT 09-MAR-2023
DEFINITION  oxysterol-binding protein-related protein 8 isoform X8 [Cuculus
            canorus].
ACCESSION   XP_053913731
VERSION     XP_053913731.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057756.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..798
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..798
                     /product="oxysterol-binding protein-related protein 8
                     isoform X8"
                     /calculated_mol_wt=90995
     Region          51..180
                     /region_name="PH_OPR5_ORP8"
                     /note="Human Oxysterol binding protein related proteins 5
                     and 8 Pleckstrin homology (PH) domain; cd13286"
                     /db_xref="CDD:270103"
     Region          315..661
                     /region_name="Oxysterol_BP"
                     /note="Oxysterol-binding protein; pfam01237"
                     /db_xref="CDD:460126"
     CDS             1..798
                     /gene="OSBPL8"
                     /coded_by="XM_054057756.1:191..2587"
                     /db_xref="GeneID:104061135"
ORIGIN      
        1 mglgsesklf ngsekdisls sskltkkesl kvqkknyree kkratkells titdpsvivm
       61 adwlkirgtl kswtklwcvl kpgvllvykt pkngqwvgtv llnacelier pskkdgfcfk
      121 lfhpleqsiw aikgpkgeav gsitqplpss yliiraases dgrcwmdale lalkcssllk
      181 rtmiregkeh dlnssadsth vslygllran nlhsgenlpl ndseierhhf kdqdmysdks
      241 dkendhdhee sdndglgkse esdsdtserq ddsyidpepi dikettyveq speelgeage
      301 aaqtevvsee nksliwtllk qvrpgmdlsk vvlptfilep rsfldklsdy yyhadflsea
      361 aleenaynrm kkvvkwylsg fykkpkglkk pynpilgetf rcmwihprtn sktfyiaeqv
      421 shhppisafy vsnrkdgfcl sgsilakskf ygnslsaild gegrltflnr gedyvmtmpy
      481 ahckgilygt mtlelggtvn itcektgysa tiefklkpfl gnndsvnqis gkiklgkevl
      541 aileghwdse vtisekktdi setfwnptsd ikqrrlpryt vkfeeqddfe seklwqqvtr
      601 ainnkdqtea tqekyvleea qrrsakerkl kgeewmcklf dqdsvtgewh ykyadtrpwd
      661 plndmiqfek dgtiqtkvrh rtpmvnvpki krkpagqkkg ecgfsspepd nqdssgseaq
      721 llkhntrirk kgadlgelqs aiesiketqe dikrdimalr nrvtansppv dyhflqfkhy
      781 vfillvvllq liinflfk
//
LOCUS       XP_053913739            1586 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptojanin-1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053913739
VERSION     XP_053913739.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057764.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1586
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1586
                     /product="synaptojanin-1 isoform X1"
                     /calculated_mol_wt=175828
     Region          19..483
                     /region_name="COG5329"
                     /note="Phosphoinositide polyphosphatase (Sac family)
                     [Signal transduction mechanisms]"
                     /db_xref="CDD:227637"
     Region          536..871
                     /region_name="INPP5c_Synj1"
                     /note="Catalytic inositol polyphosphate 5-phosphatase
                     (INPP5c) domain of synaptojanin 1; cd09098"
                     /db_xref="CDD:197332"
     Site            order(544,546,594,671..672,692,695..696,733,735,737,
                     787..788,803,809,861..862)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:197332"
     Site            order(544,594,692,733,735,809,861..862)
                     /site_type="active"
                     /note="putative catalytic site [active]"
                     /db_xref="CDD:197332"
     Site            order(546,594,861)
                     /site_type="other"
                     /note="Mg binding site [ion binding]"
                     /db_xref="CDD:197332"
     Site            order(594,671..672,692,695..696,737,787..788,803,861)
                     /site_type="other"
                     /note="putative PI/IP binding site [chemical binding]"
                     /db_xref="CDD:197332"
     Site            order(692,735,862)
                     /site_type="other"
                     /note="putative phosphate binding site [ion binding]"
                     /db_xref="CDD:197332"
     Region          870..1012
                     /region_name="RRM_SF"
                     /note="RNA recognition motif (RRM) superfamily; cl17169"
                     /db_xref="CDD:473069"
     Region          <1136..1322
                     /region_name="GGN"
                     /note="Gametogenetin; pfam15685"
                     /db_xref="CDD:434857"
     CDS             1..1586
                     /gene="SYNJ1"
                     /coded_by="XM_054057764.1:959..5719"
                     /db_xref="GeneID:104064762"
ORIGIN      
        1 mafskgyrvy hkldplpfsv ivetrnreec lmfesgavav lssaekdtik ntyskvmday
       61 gllgvlrlnl gdtllhylvl vtgcmsvgki qdsevfrvts tefvslrids tdedrisevr
      121 kvlnsgnfyf awsatgvsld lslnahrsmq ehttdnrffw nqslhlhlkh ygvncddwll
      181 rlmcggveir tiyaahkqak aclisrlsce ragtrfnvrg tnddghvanf veteqviyld
      241 dsvssfiqir gsvplfweqp glqvgshrvr msrgfeanap afdrhfqtlk nlygkqiivn
      301 llgakegehm lskafqshlk asehaadikm vnfdyhqmvk ggkaeklhsv lkpqvqkfle
      361 cgffyfdgke vkrsqsgtvr tncldcldrt nsvqaffgle mltkqlevlg laekpqlvtr
      421 fqevfrsmws vngdsvskiy agtgalegka kagklkdgar svtrtiqnnf fdsskqeaid
      481 vlllgntlns dladkarall ttsslrvseq slqsasvkvl ksmcenfyky akpkkvrvcv
      541 gtwnvnggkq frsiafrnqt ltdwlldapk lagihefqdr kskpvdifai gfeemvelna
      601 gnivnasttn qklwaaelqk tisrdnkyvl laseqlvgvc lfvfirpqha pfirdvavdt
      661 vktgmggatg nkgavairml fhtsslcfvc shfaagqsqv kernedfvei arklsfpmgr
      721 mlfshdyifw cgdfnyridi pneevkelir qqnwepllag dqlinqknsg qifrgflegk
      781 infaptykyd lfsddydtse kcrtpawtdr ilwrrrkwpf drsaedldll nasfhddsnv
      841 pytwnpgtll hygraelkts dhrpvvalid idifeieaee rqnvykevia mqgppdgtvm
      901 vsirgssaee nyfddnlidd llqkfasyge vilirfvedk mwvtflegss alnvmnlngt
      961 ellgriinis lknpdwirsl edemnlekin iglpsstsst llcedaevta dydmegdidd
     1021 ysaeveeilp qhlqptsssg lgtspssspr sspcqsptls dgpalpvrps raptktpgpp
     1081 vsthaefqlg tqqkessqsl epkrpppprp vapparpapp qrppppsggr spaparkefg
     1141 glgappspgv arreveaqks pgtqrkdnlv rnqpppstgi sstgtagygt trptvpprag
     1201 visapqshvr psggrpaset qtkpaepprs spllpeplkp qaagpaqptt qpppvlrmqe
     1261 plipvashps qtsapqslep pqppprsrss hslpsesaps qqqiktngtf stkletqlns
     1321 dpfedlsfqq lvskmqtsvr ispvptlnqk elmqlpsakq rsadilntvn cmpamppvsa
     1381 fntsqehmrs spnpfitgqn ctnpftertn agnpfrtemq esektshile graacnpfps
     1441 lnppscntsk pvfsvdasen tfclrskslm vknvqpkgwv tfdddddnfn vklkpstsvp
     1501 dfkqissrks agspdllgte qntflgsefn fdndwnksst dcfytmparr ppappipsri
     1561 tsnrspadpf tslapkvspt qdfter
//
LOCUS       XP_053913749            1573 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptojanin-1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053913749
VERSION     XP_053913749.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057774.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1573
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1573
                     /product="synaptojanin-1 isoform X2"
                     /calculated_mol_wt=174403
     Region          19..483
                     /region_name="COG5329"
                     /note="Phosphoinositide polyphosphatase (Sac family)
                     [Signal transduction mechanisms]"
                     /db_xref="CDD:227637"
     Region          536..871
                     /region_name="INPP5c_Synj1"
                     /note="Catalytic inositol polyphosphate 5-phosphatase
                     (INPP5c) domain of synaptojanin 1; cd09098"
                     /db_xref="CDD:197332"
     Site            order(544,546,594,671..672,692,695..696,733,735,737,
                     787..788,803,809,861..862)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:197332"
     Site            order(544,594,692,733,735,809,861..862)
                     /site_type="active"
                     /note="putative catalytic site [active]"
                     /db_xref="CDD:197332"
     Site            order(546,594,861)
                     /site_type="other"
                     /note="Mg binding site [ion binding]"
                     /db_xref="CDD:197332"
     Site            order(594,671..672,692,695..696,737,787..788,803,861)
                     /site_type="other"
                     /note="putative PI/IP binding site [chemical binding]"
                     /db_xref="CDD:197332"
     Site            order(692,735,862)
                     /site_type="other"
                     /note="putative phosphate binding site [ion binding]"
                     /db_xref="CDD:197332"
     Region          870..1012
                     /region_name="RRM_SF"
                     /note="RNA recognition motif (RRM) superfamily; cl17169"
                     /db_xref="CDD:473069"
     Region          978..>1428
                     /region_name="Atrophin-1"
                     /note="Atrophin-1 family; pfam03154"
                     /db_xref="CDD:460830"
     CDS             1..1573
                     /gene="SYNJ1"
                     /coded_by="XM_054057774.1:959..5680"
                     /db_xref="GeneID:104064762"
ORIGIN      
        1 mafskgyrvy hkldplpfsv ivetrnreec lmfesgavav lssaekdtik ntyskvmday
       61 gllgvlrlnl gdtllhylvl vtgcmsvgki qdsevfrvts tefvslrids tdedrisevr
      121 kvlnsgnfyf awsatgvsld lslnahrsmq ehttdnrffw nqslhlhlkh ygvncddwll
      181 rlmcggveir tiyaahkqak aclisrlsce ragtrfnvrg tnddghvanf veteqviyld
      241 dsvssfiqir gsvplfweqp glqvgshrvr msrgfeanap afdrhfqtlk nlygkqiivn
      301 llgakegehm lskafqshlk asehaadikm vnfdyhqmvk ggkaeklhsv lkpqvqkfle
      361 cgffyfdgke vkrsqsgtvr tncldcldrt nsvqaffgle mltkqlevlg laekpqlvtr
      421 fqevfrsmws vngdsvskiy agtgalegka kagklkdgar svtrtiqnnf fdsskqeaid
      481 vlllgntlns dladkarall ttsslrvseq slqsasvkvl ksmcenfyky akpkkvrvcv
      541 gtwnvnggkq frsiafrnqt ltdwlldapk lagihefqdr kskpvdifai gfeemvelna
      601 gnivnasttn qklwaaelqk tisrdnkyvl laseqlvgvc lfvfirpqha pfirdvavdt
      661 vktgmggatg nkgavairml fhtsslcfvc shfaagqsqv kernedfvei arklsfpmgr
      721 mlfshdyifw cgdfnyridi pneevkelir qqnwepllag dqlinqknsg qifrgflegk
      781 infaptykyd lfsddydtse kcrtpawtdr ilwrrrkwpf drsaedldll nasfhddsnv
      841 pytwnpgtll hygraelkts dhrpvvalid idifeieaee rqnvykevia mqgppdgtvm
      901 vsirgssaee nyfddnlidd llqkfasyge vilirfvedk mwvtflegss alnvmnlngt
      961 ellgriinis lknpdwirsl edemnlekin iglpsstsst llcedaevta dydmegdidd
     1021 ysaeveeilp qhlqptsssg lgtspssspr sspcqsptls dgpalpvrps raptktpgpp
     1081 vsthaefqlg tqqkessqsl epkrpppprp vapparpapp qrppppsggr spaparkefg
     1141 glgappspgv arrevevrnq pppstgisst gtagygttrp tvppragvis apqshvrpsg
     1201 grpasetqtk paepprsspl lpeplkpqaa gpaqpttqpp pvlrmqepli pvashpsqts
     1261 apqsleppqp pprsrsshsl psesapsqqq iktngtfstk letqlnsdpf edlsfqqlvs
     1321 kmqtsvrisp vptlnqkelm qlpsakqrsa dilntvncmp amppvsafnt sqehmrsspn
     1381 pfitgqnctn pftertnagn pfrtemqese ktshilegra acnpfpslnp pscntskpvf
     1441 svdasentfc lrskslmvkn vqpkgwvtfd ddddnfnvkl kpstsvpdfk qissrksags
     1501 pdllgteqnt flgsefnfdn dwnksstdcf ytmparrppa ppipsritsn rspadpftsl
     1561 apkvsptqdf ter
//
LOCUS       XP_053913758            1560 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptojanin-1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053913758
VERSION     XP_053913758.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057783.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1560
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1560
                     /product="synaptojanin-1 isoform X3"
                     /calculated_mol_wt=173092
     Region          19..483
                     /region_name="COG5329"
                     /note="Phosphoinositide polyphosphatase (Sac family)
                     [Signal transduction mechanisms]"
                     /db_xref="CDD:227637"
     Region          536..871
                     /region_name="INPP5c_Synj1"
                     /note="Catalytic inositol polyphosphate 5-phosphatase
                     (INPP5c) domain of synaptojanin 1; cd09098"
                     /db_xref="CDD:197332"
     Site            order(544,546,594,671..672,692,695..696,733,735,737,
                     787..788,803,809,861..862)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:197332"
     Site            order(544,594,692,733,735,809,861..862)
                     /site_type="active"
                     /note="putative catalytic site [active]"
                     /db_xref="CDD:197332"
     Site            order(546,594,861)
                     /site_type="other"
                     /note="Mg binding site [ion binding]"
                     /db_xref="CDD:197332"
     Site            order(594,671..672,692,695..696,737,787..788,803,861)
                     /site_type="other"
                     /note="putative PI/IP binding site [chemical binding]"
                     /db_xref="CDD:197332"
     Site            order(692,735,862)
                     /site_type="other"
                     /note="putative phosphate binding site [ion binding]"
                     /db_xref="CDD:197332"
     Region          870..1012
                     /region_name="RRM_SF"
                     /note="RNA recognition motif (RRM) superfamily; cl17169"
                     /db_xref="CDD:473069"
     Region          978..>1415
                     /region_name="Atrophin-1"
                     /note="Atrophin-1 family; pfam03154"
                     /db_xref="CDD:460830"
     CDS             1..1560
                     /gene="SYNJ1"
                     /coded_by="XM_054057783.1:959..5641"
                     /db_xref="GeneID:104064762"
ORIGIN      
        1 mafskgyrvy hkldplpfsv ivetrnreec lmfesgavav lssaekdtik ntyskvmday
       61 gllgvlrlnl gdtllhylvl vtgcmsvgki qdsevfrvts tefvslrids tdedrisevr
      121 kvlnsgnfyf awsatgvsld lslnahrsmq ehttdnrffw nqslhlhlkh ygvncddwll
      181 rlmcggveir tiyaahkqak aclisrlsce ragtrfnvrg tnddghvanf veteqviyld
      241 dsvssfiqir gsvplfweqp glqvgshrvr msrgfeanap afdrhfqtlk nlygkqiivn
      301 llgakegehm lskafqshlk asehaadikm vnfdyhqmvk ggkaeklhsv lkpqvqkfle
      361 cgffyfdgke vkrsqsgtvr tncldcldrt nsvqaffgle mltkqlevlg laekpqlvtr
      421 fqevfrsmws vngdsvskiy agtgalegka kagklkdgar svtrtiqnnf fdsskqeaid
      481 vlllgntlns dladkarall ttsslrvseq slqsasvkvl ksmcenfyky akpkkvrvcv
      541 gtwnvnggkq frsiafrnqt ltdwlldapk lagihefqdr kskpvdifai gfeemvelna
      601 gnivnasttn qklwaaelqk tisrdnkyvl laseqlvgvc lfvfirpqha pfirdvavdt
      661 vktgmggatg nkgavairml fhtsslcfvc shfaagqsqv kernedfvei arklsfpmgr
      721 mlfshdyifw cgdfnyridi pneevkelir qqnwepllag dqlinqknsg qifrgflegk
      781 infaptykyd lfsddydtse kcrtpawtdr ilwrrrkwpf drsaedldll nasfhddsnv
      841 pytwnpgtll hygraelkts dhrpvvalid idifeieaee rqnvykevia mqgppdgtvm
      901 vsirgssaee nyfddnlidd llqkfasyge vilirfvedk mwvtflegss alnvmnlngt
      961 ellgriinis lknpdwirsl edemnlekin iglpsstsst llcedaevta dydmegdidd
     1021 ysaeveeilp qhlqptsssg lgtspssspr sspcqsptls dgpalpvrps raptktpgpp
     1081 vsthaefqlg tqqkessqsl epkrpppprp vapparpapp qrppppsglg appspgvarr
     1141 evevrnqppp stgisstgta gygttrptvp pragvisapq shvrpsggrp asetqtkpae
     1201 pprsspllpe plkpqaagpa qpttqpppvl rmqeplipva shpsqtsapq sleppqpppr
     1261 srsshslpse sapsqqqikt ngtfstklet qlnsdpfedl sfqqlvskmq tsvrispvpt
     1321 lnqkelmqlp sakqrsadil ntvncmpamp pvsafntsqe hmrsspnpfi tgqnctnpft
     1381 ertnagnpfr temqesekts hilegraacn pfpslnppsc ntskpvfsvd asentfclrs
     1441 kslmvknvqp kgwvtfdddd dnfnvklkps tsvpdfkqis srksagspdl lgteqntflg
     1501 sefnfdndwn ksstdcfytm parrppappi psritsnrsp adpftslapk vsptqdfter
//
LOCUS       XP_053913768            1544 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptojanin-1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053913768
VERSION     XP_053913768.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057793.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1544
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1544
                     /product="synaptojanin-1 isoform X4"
                     /calculated_mol_wt=171518
     Region          19..483
                     /region_name="COG5329"
                     /note="Phosphoinositide polyphosphatase (Sac family)
                     [Signal transduction mechanisms]"
                     /db_xref="CDD:227637"
     Region          536..871
                     /region_name="INPP5c_Synj1"
                     /note="Catalytic inositol polyphosphate 5-phosphatase
                     (INPP5c) domain of synaptojanin 1; cd09098"
                     /db_xref="CDD:197332"
     Site            order(544,546,594,671..672,692,695..696,733,735,737,
                     787..788,803,809,861..862)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:197332"
     Site            order(544,594,692,733,735,809,861..862)
                     /site_type="active"
                     /note="putative catalytic site [active]"
                     /db_xref="CDD:197332"
     Site            order(546,594,861)
                     /site_type="other"
                     /note="Mg binding site [ion binding]"
                     /db_xref="CDD:197332"
     Site            order(594,671..672,692,695..696,737,787..788,803,861)
                     /site_type="other"
                     /note="putative PI/IP binding site [chemical binding]"
                     /db_xref="CDD:197332"
     Site            order(692,735,862)
                     /site_type="other"
                     /note="putative phosphate binding site [ion binding]"
                     /db_xref="CDD:197332"
     Region          870..1012
                     /region_name="RRM_SF"
                     /note="RNA recognition motif (RRM) superfamily; cl17169"
                     /db_xref="CDD:473069"
     Region          <1035..1397
                     /region_name="DUF5585"
                     /note="Family of unknown function (DUF5585); pfam17823"
                     /db_xref="CDD:465521"
     Region          <1127..>1261
                     /region_name="Atrophin-1"
                     /note="Atrophin-1 family; pfam03154"
                     /db_xref="CDD:460830"
     CDS             1..1544
                     /gene="SYNJ1"
                     /coded_by="XM_054057793.1:958..5592"
                     /db_xref="GeneID:104064762"
ORIGIN      
        1 mafskgyrvy hkldplpfsv ivetrnreec lmfesgavav lssaekdtik ntyskvmday
       61 gllgvlrlnl gdtllhylvl vtgcmsvgki qdsevfrvts tefvslrids tdedrisevr
      121 kvlnsgnfyf awsatgvsld lslnahrsmq ehttdnrffw nqslhlhlkh ygvncddwll
      181 rlmcggveir tiyaahkqak aclisrlsce ragtrfnvrg tnddghvanf veteqviyld
      241 dsvssfiqir gsvplfweqp glqvgshrvr msrgfeanap afdrhfqtlk nlygkqiivn
      301 llgakegehm lskafqshlk asehaadikm vnfdyhqmvk ggkaeklhsv lkpqvqkfle
      361 cgffyfdgke vkrsqsgtvr tncldcldrt nsvqaffgle mltkqlevlg laekpqlvtr
      421 fqevfrsmws vngdsvskiy agtgalegka kagklkdgar svtrtiqnnf fdsskqeaid
      481 vlllgntlns dladkarall ttsslrvseq slqsasvkvl ksmcenfyky akpkkvrvcv
      541 gtwnvnggkq frsiafrnqt ltdwlldapk lagihefqdr kskpvdifai gfeemvelna
      601 gnivnasttn qklwaaelqk tisrdnkyvl laseqlvgvc lfvfirpqha pfirdvavdt
      661 vktgmggatg nkgavairml fhtsslcfvc shfaagqsqv kernedfvei arklsfpmgr
      721 mlfshdyifw cgdfnyridi pneevkelir qqnwepllag dqlinqknsg qifrgflegk
      781 infaptykyd lfsddydtse kcrtpawtdr ilwrrrkwpf drsaedldll nasfhddsnv
      841 pytwnpgtll hygraelkts dhrpvvalid idifeieaee rqnvykevia mqgppdgtvm
      901 vsirgssaee nyfddnlidd llqkfasyge vilirfvedk mwvtflegss alnvmnlngt
      961 ellgriinis lknpdwirsl edemnlekin iglpsstsst llcedaevta dydmegdidd
     1021 ysaeveeilp qhlqptsssg lgtspssspr sspcqsptls dgpalpvrps raptktpgpp
     1081 vsthaefqlg tqqkessqsl epkrpppprp vapparpapp qrppppsvrn qpppstgiss
     1141 tgtagygttr ptvppragvi sapqshvrps ggrpasetqt kpaepprssp llpeplkpqa
     1201 agpaqpttqp ppvlrmqepl ipvashpsqt sapqsleppq ppprsrsshs lpsesapsqq
     1261 qiktngtfst kletqlnsdp fedlsfqqlv skmqtsvris pvptlnqkel mqlpsakqrs
     1321 adilntvncm pamppvsafn tsqehmrssp npfitgqnct npftertnag npfrtemqes
     1381 ektshilegr aacnpfpsln ppscntskpv fsvdasentf clrskslmvk nvqpkgwvtf
     1441 dddddnfnvk lkpstsvpdf kqissrksag spdllgteqn tflgsefnfd ndwnksstdc
     1501 fytmparrpp appipsrits nrspadpfts lapkvsptqd fter
//
LOCUS       XP_053913777            1309 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptojanin-1 isoform X5 [Cuculus canorus].
ACCESSION   XP_053913777
VERSION     XP_053913777.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057802.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1309
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1309
                     /product="synaptojanin-1 isoform X5"
                     /calculated_mol_wt=145072
     Region          19..483
                     /region_name="COG5329"
                     /note="Phosphoinositide polyphosphatase (Sac family)
                     [Signal transduction mechanisms]"
                     /db_xref="CDD:227637"
     Region          536..871
                     /region_name="INPP5c_Synj1"
                     /note="Catalytic inositol polyphosphate 5-phosphatase
                     (INPP5c) domain of synaptojanin 1; cd09098"
                     /db_xref="CDD:197332"
     Site            order(544,546,594,671..672,692,695..696,733,735,737,
                     787..788,803,809,861..862)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:197332"
     Site            order(544,594,692,733,735,809,861..862)
                     /site_type="active"
                     /note="putative catalytic site [active]"
                     /db_xref="CDD:197332"
     Site            order(546,594,861)
                     /site_type="other"
                     /note="Mg binding site [ion binding]"
                     /db_xref="CDD:197332"
     Site            order(594,671..672,692,695..696,737,787..788,803,861)
                     /site_type="other"
                     /note="putative PI/IP binding site [chemical binding]"
                     /db_xref="CDD:197332"
     Site            order(692,735,862)
                     /site_type="other"
                     /note="putative phosphate binding site [ion binding]"
                     /db_xref="CDD:197332"
     Region          870..1012
                     /region_name="RRM_SF"
                     /note="RNA recognition motif (RRM) superfamily; cl17169"
                     /db_xref="CDD:473069"
     Region          <1131..1308
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..1309
                     /gene="SYNJ1"
                     /coded_by="XM_054057802.1:968..4897"
                     /db_xref="GeneID:104064762"
ORIGIN      
        1 mafskgyrvy hkldplpfsv ivetrnreec lmfesgavav lssaekdtik ntyskvmday
       61 gllgvlrlnl gdtllhylvl vtgcmsvgki qdsevfrvts tefvslrids tdedrisevr
      121 kvlnsgnfyf awsatgvsld lslnahrsmq ehttdnrffw nqslhlhlkh ygvncddwll
      181 rlmcggveir tiyaahkqak aclisrlsce ragtrfnvrg tnddghvanf veteqviyld
      241 dsvssfiqir gsvplfweqp glqvgshrvr msrgfeanap afdrhfqtlk nlygkqiivn
      301 llgakegehm lskafqshlk asehaadikm vnfdyhqmvk ggkaeklhsv lkpqvqkfle
      361 cgffyfdgke vkrsqsgtvr tncldcldrt nsvqaffgle mltkqlevlg laekpqlvtr
      421 fqevfrsmws vngdsvskiy agtgalegka kagklkdgar svtrtiqnnf fdsskqeaid
      481 vlllgntlns dladkarall ttsslrvseq slqsasvkvl ksmcenfyky akpkkvrvcv
      541 gtwnvnggkq frsiafrnqt ltdwlldapk lagihefqdr kskpvdifai gfeemvelna
      601 gnivnasttn qklwaaelqk tisrdnkyvl laseqlvgvc lfvfirpqha pfirdvavdt
      661 vktgmggatg nkgavairml fhtsslcfvc shfaagqsqv kernedfvei arklsfpmgr
      721 mlfshdyifw cgdfnyridi pneevkelir qqnwepllag dqlinqknsg qifrgflegk
      781 infaptykyd lfsddydtse kcrtpawtdr ilwrrrkwpf drsaedldll nasfhddsnv
      841 pytwnpgtll hygraelkts dhrpvvalid idifeieaee rqnvykevia mqgppdgtvm
      901 vsirgssaee nyfddnlidd llqkfasyge vilirfvedk mwvtflegss alnvmnlngt
      961 ellgriinis lknpdwirsl edemnlekin iglpsstsst llcedaevta dydmegdidd
     1021 ysaeveeilp qhlqptsssg lgtspssspr sspcqsptls dgpalpvrps raptktpgpp
     1081 vsthaefqlg tqqkessqsl epkrpppprp vapparpapp qrppppsggr spaparkefg
     1141 glgappspgv arreveaqks pgtqrkdnlv rnqpppstgi sstgtagygt trptvpprag
     1201 visapqshvr psggrpaset qtkpaepprs spllpeplkp qaagpaqptt qpppvlrmqe
     1261 plipvashps qtsapqslep pqppprsrss hslpsesaps qqqqeqpsg
//
LOCUS       XP_053913786            1308 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptojanin-1 isoform X6 [Cuculus canorus].
ACCESSION   XP_053913786
VERSION     XP_053913786.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057811.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1308
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1308
                     /product="synaptojanin-1 isoform X6"
                     /calculated_mol_wt=144944
     Region          19..483
                     /region_name="COG5329"
                     /note="Phosphoinositide polyphosphatase (Sac family)
                     [Signal transduction mechanisms]"
                     /db_xref="CDD:227637"
     Region          536..871
                     /region_name="INPP5c_Synj1"
                     /note="Catalytic inositol polyphosphate 5-phosphatase
                     (INPP5c) domain of synaptojanin 1; cd09098"
                     /db_xref="CDD:197332"
     Site            order(544,546,594,671..672,692,695..696,733,735,737,
                     787..788,803,809,861..862)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:197332"
     Site            order(544,594,692,733,735,809,861..862)
                     /site_type="active"
                     /note="putative catalytic site [active]"
                     /db_xref="CDD:197332"
     Site            order(546,594,861)
                     /site_type="other"
                     /note="Mg binding site [ion binding]"
                     /db_xref="CDD:197332"
     Site            order(594,671..672,692,695..696,737,787..788,803,861)
                     /site_type="other"
                     /note="putative PI/IP binding site [chemical binding]"
                     /db_xref="CDD:197332"
     Site            order(692,735,862)
                     /site_type="other"
                     /note="putative phosphate binding site [ion binding]"
                     /db_xref="CDD:197332"
     Region          870..1012
                     /region_name="RRM_SF"
                     /note="RNA recognition motif (RRM) superfamily; cl17169"
                     /db_xref="CDD:473069"
     Region          1134..>1306
                     /region_name="Atrophin-1"
                     /note="Atrophin-1 family; pfam03154"
                     /db_xref="CDD:460830"
     CDS             1..1308
                     /gene="SYNJ1"
                     /coded_by="XM_054057811.1:969..4895"
                     /db_xref="GeneID:104064762"
ORIGIN      
        1 mafskgyrvy hkldplpfsv ivetrnreec lmfesgavav lssaekdtik ntyskvmday
       61 gllgvlrlnl gdtllhylvl vtgcmsvgki qdsevfrvts tefvslrids tdedrisevr
      121 kvlnsgnfyf awsatgvsld lslnahrsmq ehttdnrffw nqslhlhlkh ygvncddwll
      181 rlmcggveir tiyaahkqak aclisrlsce ragtrfnvrg tnddghvanf veteqviyld
      241 dsvssfiqir gsvplfweqp glqvgshrvr msrgfeanap afdrhfqtlk nlygkqiivn
      301 llgakegehm lskafqshlk asehaadikm vnfdyhqmvk ggkaeklhsv lkpqvqkfle
      361 cgffyfdgke vkrsqsgtvr tncldcldrt nsvqaffgle mltkqlevlg laekpqlvtr
      421 fqevfrsmws vngdsvskiy agtgalegka kagklkdgar svtrtiqnnf fdsskqeaid
      481 vlllgntlns dladkarall ttsslrvseq slqsasvkvl ksmcenfyky akpkkvrvcv
      541 gtwnvnggkq frsiafrnqt ltdwlldapk lagihefqdr kskpvdifai gfeemvelna
      601 gnivnasttn qklwaaelqk tisrdnkyvl laseqlvgvc lfvfirpqha pfirdvavdt
      661 vktgmggatg nkgavairml fhtsslcfvc shfaagqsqv kernedfvei arklsfpmgr
      721 mlfshdyifw cgdfnyridi pneevkelir qqnwepllag dqlinqknsg qifrgflegk
      781 infaptykyd lfsddydtse kcrtpawtdr ilwrrrkwpf drsaedldll nasfhddsnv
      841 pytwnpgtll hygraelkts dhrpvvalid idifeieaee rqnvykevia mqgppdgtvm
      901 vsirgssaee nyfddnlidd llqkfasyge vilirfvedk mwvtflegss alnvmnlngt
      961 ellgriinis lknpdwirsl edemnlekin iglpsstsst llcedaevta dydmegdidd
     1021 ysaeveeilp qhlqptsssg lgtspssspr sspcqsptls dgpalpvrps raptktpgpp
     1081 vsthaefqlg tqqkessqsl epkrpppprp vapparpapp qrppppsggr spaparkefg
     1141 glgappspgv arreveaqks pgtqrkdnlv rnqpppstgi sstgtagygt trptvpprag
     1201 visapqshvr psggrpaset qtkpaepprs spllpeplkp qaagpaqptt qpppvlrmqe
     1261 plipvashps qtsapqslep pqppprsrss hslpsesaps qqqeqpsg
//
LOCUS       XP_053913795            1267 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptojanin-1 isoform X7 [Cuculus canorus].
ACCESSION   XP_053913795
VERSION     XP_053913795.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057820.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1267
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1267
                     /product="synaptojanin-1 isoform X7"
                     /calculated_mol_wt=140762
     Region          19..483
                     /region_name="COG5329"
                     /note="Phosphoinositide polyphosphatase (Sac family)
                     [Signal transduction mechanisms]"
                     /db_xref="CDD:227637"
     Region          536..871
                     /region_name="INPP5c_Synj1"
                     /note="Catalytic inositol polyphosphate 5-phosphatase
                     (INPP5c) domain of synaptojanin 1; cd09098"
                     /db_xref="CDD:197332"
     Site            order(544,546,594,671..672,692,695..696,733,735,737,
                     787..788,803,809,861..862)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:197332"
     Site            order(544,594,692,733,735,809,861..862)
                     /site_type="active"
                     /note="putative catalytic site [active]"
                     /db_xref="CDD:197332"
     Site            order(546,594,861)
                     /site_type="other"
                     /note="Mg binding site [ion binding]"
                     /db_xref="CDD:197332"
     Site            order(594,671..672,692,695..696,737,787..788,803,861)
                     /site_type="other"
                     /note="putative PI/IP binding site [chemical binding]"
                     /db_xref="CDD:197332"
     Site            order(692,735,862)
                     /site_type="other"
                     /note="putative phosphate binding site [ion binding]"
                     /db_xref="CDD:197332"
     Region          870..1012
                     /region_name="RRM_SF"
                     /note="RNA recognition motif (RRM) superfamily; cl17169"
                     /db_xref="CDD:473069"
     CDS             1..1267
                     /gene="SYNJ1"
                     /coded_by="XM_054057820.1:966..4769"
                     /db_xref="GeneID:104064762"
ORIGIN      
        1 mafskgyrvy hkldplpfsv ivetrnreec lmfesgavav lssaekdtik ntyskvmday
       61 gllgvlrlnl gdtllhylvl vtgcmsvgki qdsevfrvts tefvslrids tdedrisevr
      121 kvlnsgnfyf awsatgvsld lslnahrsmq ehttdnrffw nqslhlhlkh ygvncddwll
      181 rlmcggveir tiyaahkqak aclisrlsce ragtrfnvrg tnddghvanf veteqviyld
      241 dsvssfiqir gsvplfweqp glqvgshrvr msrgfeanap afdrhfqtlk nlygkqiivn
      301 llgakegehm lskafqshlk asehaadikm vnfdyhqmvk ggkaeklhsv lkpqvqkfle
      361 cgffyfdgke vkrsqsgtvr tncldcldrt nsvqaffgle mltkqlevlg laekpqlvtr
      421 fqevfrsmws vngdsvskiy agtgalegka kagklkdgar svtrtiqnnf fdsskqeaid
      481 vlllgntlns dladkarall ttsslrvseq slqsasvkvl ksmcenfyky akpkkvrvcv
      541 gtwnvnggkq frsiafrnqt ltdwlldapk lagihefqdr kskpvdifai gfeemvelna
      601 gnivnasttn qklwaaelqk tisrdnkyvl laseqlvgvc lfvfirpqha pfirdvavdt
      661 vktgmggatg nkgavairml fhtsslcfvc shfaagqsqv kernedfvei arklsfpmgr
      721 mlfshdyifw cgdfnyridi pneevkelir qqnwepllag dqlinqknsg qifrgflegk
      781 infaptykyd lfsddydtse kcrtpawtdr ilwrrrkwpf drsaedldll nasfhddsnv
      841 pytwnpgtll hygraelkts dhrpvvalid idifeieaee rqnvykevia mqgppdgtvm
      901 vsirgssaee nyfddnlidd llqkfasyge vilirfvedk mwvtflegss alnvmnlngt
      961 ellgriinis lknpdwirsl edemnlekin iglpsstsst llcedaevta dydmegdidd
     1021 ysaeveeilp qhlqptsssg lgtspssspr sspcqsptls dgpalpvrps raptktpgpp
     1081 vsthaefqlg tqqkessqsl epkrpppprp vapparpapp qrppppsvrn qpppstgiss
     1141 tgtagygttr ptvppragvi sapqshvrps ggrpasetqt kpaepprssp llpeplkpqa
     1201 agpaqpttqp ppvlrmqepl ipvashpsqt sapqsleppq ppprsrsshs lpsesapsqq
     1261 qqeqpsg
//
LOCUS       XP_053913802            1583 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptojanin-1 isoform X8 [Cuculus canorus].
ACCESSION   XP_053913802
VERSION     XP_053913802.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057827.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1583
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1583
                     /product="synaptojanin-1 isoform X8"
                     /calculated_mol_wt=175571
     Region          19..480
                     /region_name="COG5329"
                     /note="Phosphoinositide polyphosphatase (Sac family)
                     [Signal transduction mechanisms]"
                     /db_xref="CDD:227637"
     Region          533..868
                     /region_name="INPP5c_Synj1"
                     /note="Catalytic inositol polyphosphate 5-phosphatase
                     (INPP5c) domain of synaptojanin 1; cd09098"
                     /db_xref="CDD:197332"
     Site            order(541,543,591,668..669,689,692..693,730,732,734,
                     784..785,800,806,858..859)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:197332"
     Site            order(541,591,689,730,732,806,858..859)
                     /site_type="active"
                     /note="putative catalytic site [active]"
                     /db_xref="CDD:197332"
     Site            order(543,591,858)
                     /site_type="other"
                     /note="Mg binding site [ion binding]"
                     /db_xref="CDD:197332"
     Site            order(591,668..669,689,692..693,734,784..785,800,858)
                     /site_type="other"
                     /note="putative PI/IP binding site [chemical binding]"
                     /db_xref="CDD:197332"
     Site            order(689,732,859)
                     /site_type="other"
                     /note="putative phosphate binding site [ion binding]"
                     /db_xref="CDD:197332"
     Region          867..1009
                     /region_name="RRM_SF"
                     /note="RNA recognition motif (RRM) superfamily; cl17169"
                     /db_xref="CDD:473069"
     Region          <1133..1319
                     /region_name="GGN"
                     /note="Gametogenetin; pfam15685"
                     /db_xref="CDD:434857"
     CDS             1..1583
                     /gene="SYNJ1"
                     /coded_by="XM_054057827.1:959..5710"
                     /db_xref="GeneID:104064762"
ORIGIN      
        1 mafskgyrvy hkldplpfsv ivetrnreec lmfesgavav lssaekdtik ntyskvmday
       61 gllgvlrlnl gdtllhylvl vtgcmsvgki qdsevfrvts tefvslrids tdedrisevr
      121 kvlnsgnfyf awsatgvsld lslnahrsmq ehttdnrffw nqslhlhlkh ygvncddwll
      181 rlmcggveir tiyaahkqak aclisrlsce ragtrfnvrg tnddghvanf veteqviyld
      241 dsvssfiqir gsvplfweqp glqvgshrvr msrgfeanap afdrhfqtlk nlygkqiivn
      301 llgakegehm lskafqshlk asehaadikm vnfdyhqmvk ggkaeklhsv lkpqvqkfle
      361 cgffyfdgke vkrsqsgtvr tncldcldrt nsvqaffgle mltkqlevlg laekpqlvtr
      421 fqevfrsmws vngdsvskiy agtgalegka klkdgarsvt rtiqnnffds skqeaidvll
      481 lgntlnsdla dkaralltts slrvseqslq sasvkvlksm cenfykyakp kkvrvcvgtw
      541 nvnggkqfrs iafrnqtltd wlldapklag ihefqdrksk pvdifaigfe emvelnagni
      601 vnasttnqkl waaelqktis rdnkyvllas eqlvgvclfv firpqhapfi rdvavdtvkt
      661 gmggatgnkg avairmlfht sslcfvcshf aagqsqvker nedfveiark lsfpmgrmlf
      721 shdyifwcgd fnyridipne evkelirqqn wepllagdql inqknsgqif rgflegkinf
      781 aptykydlfs ddydtsekcr tpawtdrilw rrrkwpfdrs aedldllnas fhddsnvpyt
      841 wnpgtllhyg raelktsdhr pvvalididi feieaeerqn vykeviamqg ppdgtvmvsi
      901 rgssaeenyf ddnliddllq kfasygevil irfvedkmwv tflegssaln vmnlngtell
      961 griinislkn pdwirslede mnlekinigl psstsstllc edaevtadyd megdiddysa
     1021 eveeilpqhl qptsssglgt spsssprssp cqsptlsdgp alpvrpsrap tktpgppvst
     1081 haefqlgtqq kessqslepk rpppprpvap parpappqrp pppsggrspa parkefgglg
     1141 appspgvarr eveaqkspgt qrkdnlvrnq pppstgisst gtagygttrp tvppragvis
     1201 apqshvrpsg grpasetqtk paepprsspl lpeplkpqaa gpaqpttqpp pvlrmqepli
     1261 pvashpsqts apqsleppqp pprsrsshsl psesapsqqq iktngtfstk letqlnsdpf
     1321 edlsfqqlvs kmqtsvrisp vptlnqkelm qlpsakqrsa dilntvncmp amppvsafnt
     1381 sqehmrsspn pfitgqnctn pftertnagn pfrtemqese ktshilegra acnpfpslnp
     1441 pscntskpvf svdasentfc lrskslmvkn vqpkgwvtfd ddddnfnvkl kpstsvpdfk
     1501 qissrksags pdllgteqnt flgsefnfdn dwnksstdcf ytmparrppa ppipsritsn
     1561 rspadpftsl apkvsptqdf ter
//
LOCUS       XP_053913804            1536 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptojanin-1 isoform X9 [Cuculus canorus].
ACCESSION   XP_053913804
VERSION     XP_053913804.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057829.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1536
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1536
                     /product="synaptojanin-1 isoform X9"
                     /calculated_mol_wt=170659
     Region          19..483
                     /region_name="COG5329"
                     /note="Phosphoinositide polyphosphatase (Sac family)
                     [Signal transduction mechanisms]"
                     /db_xref="CDD:227637"
     Region          528..863
                     /region_name="INPP5c_Synj1"
                     /note="Catalytic inositol polyphosphate 5-phosphatase
                     (INPP5c) domain of synaptojanin 1; cd09098"
                     /db_xref="CDD:197332"
     Site            order(536,538,586,663..664,684,687..688,725,727,729,
                     779..780,795,801,853..854)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:197332"
     Site            order(536,586,684,725,727,801,853..854)
                     /site_type="active"
                     /note="putative catalytic site [active]"
                     /db_xref="CDD:197332"
     Site            order(538,586,853)
                     /site_type="other"
                     /note="Mg binding site [ion binding]"
                     /db_xref="CDD:197332"
     Site            order(586,663..664,684,687..688,729,779..780,795,853)
                     /site_type="other"
                     /note="putative PI/IP binding site [chemical binding]"
                     /db_xref="CDD:197332"
     Site            order(684,727,854)
                     /site_type="other"
                     /note="putative phosphate binding site [ion binding]"
                     /db_xref="CDD:197332"
     Region          862..1004
                     /region_name="RRM_SF"
                     /note="RNA recognition motif (RRM) superfamily; cl17169"
                     /db_xref="CDD:473069"
     Region          <1027..1389
                     /region_name="DUF5585"
                     /note="Family of unknown function (DUF5585); pfam17823"
                     /db_xref="CDD:465521"
     Region          <1119..>1253
                     /region_name="Atrophin-1"
                     /note="Atrophin-1 family; pfam03154"
                     /db_xref="CDD:460830"
     CDS             1..1536
                     /gene="SYNJ1"
                     /coded_by="XM_054057829.1:958..5568"
                     /db_xref="GeneID:104064762"
ORIGIN      
        1 mafskgyrvy hkldplpfsv ivetrnreec lmfesgavav lssaekdtik ntyskvmday
       61 gllgvlrlnl gdtllhylvl vtgcmsvgki qdsevfrvts tefvslrids tdedrisevr
      121 kvlnsgnfyf awsatgvsld lslnahrsmq ehttdnrffw nqslhlhlkh ygvncddwll
      181 rlmcggveir tiyaahkqak aclisrlsce ragtrfnvrg tnddghvanf veteqviyld
      241 dsvssfiqir gsvplfweqp glqvgshrvr msrgfeanap afdrhfqtlk nlygkqiivn
      301 llgakegehm lskafqshlk asehaadikm vnfdyhqmvk ggkaeklhsv lkpqvqkfle
      361 cgffyfdgke vkrsqsgtvr tncldcldrt nsvqaffgle mltkqlevlg laekpqlvtr
      421 fqevfrsmws vngdsvskiy agtgalegka kagklkdgar svtrtiqnnf fdsskqeaid
      481 vlllgntlns dladkarall ttsslrasvk vlksmcenfy kyakpkkvrv cvgtwnvngg
      541 kqfrsiafrn qtltdwllda pklagihefq drkskpvdif aigfeemvel nagnivnast
      601 tnqklwaael qktisrdnky vllaseqlvg vclfvfirpq hapfirdvav dtvktgmgga
      661 tgnkgavair mlfhtsslcf vcshfaagqs qvkernedfv eiarklsfpm grmlfshdyi
      721 fwcgdfnyri dipneevkel irqqnwepll agdqlinqkn sgqifrgfle gkinfaptyk
      781 ydlfsddydt sekcrtpawt drilwrrrkw pfdrsaedld llnasfhdds nvpytwnpgt
      841 llhygraelk tsdhrpvval ididifeiea eerqnvykev iamqgppdgt vmvsirgssa
      901 eenyfddnli ddllqkfasy gevilirfve dkmwvtfleg ssalnvmnln gtellgriin
      961 islknpdwir sledemnlek iniglpssts stllcedaev tadydmegdi ddysaeveei
     1021 lpqhlqptss sglgtspsss prsspcqspt lsdgpalpvr psraptktpg ppvsthaefq
     1081 lgtqqkessq slepkrpppp rpvapparpa ppqrppppsv rnqpppstgi sstgtagygt
     1141 trptvpprag visapqshvr psggrpaset qtkpaepprs spllpeplkp qaagpaqptt
     1201 qpppvlrmqe plipvashps qtsapqslep pqppprsrss hslpsesaps qqqiktngtf
     1261 stkletqlns dpfedlsfqq lvskmqtsvr ispvptlnqk elmqlpsakq rsadilntvn
     1321 cmpamppvsa fntsqehmrs spnpfitgqn ctnpftertn agnpfrtemq esektshile
     1381 graacnpfps lnppscntsk pvfsvdasen tfclrskslm vknvqpkgwv tfdddddnfn
     1441 vklkpstsvp dfkqissrks agspdllgte qntflgsefn fdndwnksst dcfytmparr
     1501 ppappipsri tsnrspadpf tslapkvspt qdfter
//
LOCUS       XP_053913813            1306 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptojanin-1 isoform X10 [Cuculus canorus].
ACCESSION   XP_053913813
VERSION     XP_053913813.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057838.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1306
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1306
                     /product="synaptojanin-1 isoform X10"
                     /calculated_mol_wt=144816
     Region          19..480
                     /region_name="COG5329"
                     /note="Phosphoinositide polyphosphatase (Sac family)
                     [Signal transduction mechanisms]"
                     /db_xref="CDD:227637"
     Region          533..868
                     /region_name="INPP5c_Synj1"
                     /note="Catalytic inositol polyphosphate 5-phosphatase
                     (INPP5c) domain of synaptojanin 1; cd09098"
                     /db_xref="CDD:197332"
     Site            order(541,543,591,668..669,689,692..693,730,732,734,
                     784..785,800,806,858..859)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:197332"
     Site            order(541,591,689,730,732,806,858..859)
                     /site_type="active"
                     /note="putative catalytic site [active]"
                     /db_xref="CDD:197332"
     Site            order(543,591,858)
                     /site_type="other"
                     /note="Mg binding site [ion binding]"
                     /db_xref="CDD:197332"
     Site            order(591,668..669,689,692..693,734,784..785,800,858)
                     /site_type="other"
                     /note="putative PI/IP binding site [chemical binding]"
                     /db_xref="CDD:197332"
     Site            order(689,732,859)
                     /site_type="other"
                     /note="putative phosphate binding site [ion binding]"
                     /db_xref="CDD:197332"
     Region          867..1009
                     /region_name="RRM_SF"
                     /note="RNA recognition motif (RRM) superfamily; cl17169"
                     /db_xref="CDD:473069"
     Region          <1128..1305
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..1306
                     /gene="SYNJ1"
                     /coded_by="XM_054057838.1:968..4888"
                     /db_xref="GeneID:104064762"
ORIGIN      
        1 mafskgyrvy hkldplpfsv ivetrnreec lmfesgavav lssaekdtik ntyskvmday
       61 gllgvlrlnl gdtllhylvl vtgcmsvgki qdsevfrvts tefvslrids tdedrisevr
      121 kvlnsgnfyf awsatgvsld lslnahrsmq ehttdnrffw nqslhlhlkh ygvncddwll
      181 rlmcggveir tiyaahkqak aclisrlsce ragtrfnvrg tnddghvanf veteqviyld
      241 dsvssfiqir gsvplfweqp glqvgshrvr msrgfeanap afdrhfqtlk nlygkqiivn
      301 llgakegehm lskafqshlk asehaadikm vnfdyhqmvk ggkaeklhsv lkpqvqkfle
      361 cgffyfdgke vkrsqsgtvr tncldcldrt nsvqaffgle mltkqlevlg laekpqlvtr
      421 fqevfrsmws vngdsvskiy agtgalegka klkdgarsvt rtiqnnffds skqeaidvll
      481 lgntlnsdla dkaralltts slrvseqslq sasvkvlksm cenfykyakp kkvrvcvgtw
      541 nvnggkqfrs iafrnqtltd wlldapklag ihefqdrksk pvdifaigfe emvelnagni
      601 vnasttnqkl waaelqktis rdnkyvllas eqlvgvclfv firpqhapfi rdvavdtvkt
      661 gmggatgnkg avairmlfht sslcfvcshf aagqsqvker nedfveiark lsfpmgrmlf
      721 shdyifwcgd fnyridipne evkelirqqn wepllagdql inqknsgqif rgflegkinf
      781 aptykydlfs ddydtsekcr tpawtdrilw rrrkwpfdrs aedldllnas fhddsnvpyt
      841 wnpgtllhyg raelktsdhr pvvalididi feieaeerqn vykeviamqg ppdgtvmvsi
      901 rgssaeenyf ddnliddllq kfasygevil irfvedkmwv tflegssaln vmnlngtell
      961 griinislkn pdwirslede mnlekinigl psstsstllc edaevtadyd megdiddysa
     1021 eveeilpqhl qptsssglgt spsssprssp cqsptlsdgp alpvrpsrap tktpgppvst
     1081 haefqlgtqq kessqslepk rpppprpvap parpappqrp pppsggrspa parkefgglg
     1141 appspgvarr eveaqkspgt qrkdnlvrnq pppstgisst gtagygttrp tvppragvis
     1201 apqshvrpsg grpasetqtk paepprsspl lpeplkpqaa gpaqpttqpp pvlrmqepli
     1261 pvashpsqts apqsleppqp pprsrsshsl psesapsqqq qeqpsg
//
LOCUS       XP_053913823            1259 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptojanin-1 isoform X11 [Cuculus canorus].
ACCESSION   XP_053913823
VERSION     XP_053913823.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057848.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1259
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1259
                     /product="synaptojanin-1 isoform X11"
                     /calculated_mol_wt=139903
     Region          19..483
                     /region_name="COG5329"
                     /note="Phosphoinositide polyphosphatase (Sac family)
                     [Signal transduction mechanisms]"
                     /db_xref="CDD:227637"
     Region          528..863
                     /region_name="INPP5c_Synj1"
                     /note="Catalytic inositol polyphosphate 5-phosphatase
                     (INPP5c) domain of synaptojanin 1; cd09098"
                     /db_xref="CDD:197332"
     Site            order(536,538,586,663..664,684,687..688,725,727,729,
                     779..780,795,801,853..854)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:197332"
     Site            order(536,586,684,725,727,801,853..854)
                     /site_type="active"
                     /note="putative catalytic site [active]"
                     /db_xref="CDD:197332"
     Site            order(538,586,853)
                     /site_type="other"
                     /note="Mg binding site [ion binding]"
                     /db_xref="CDD:197332"
     Site            order(586,663..664,684,687..688,729,779..780,795,853)
                     /site_type="other"
                     /note="putative PI/IP binding site [chemical binding]"
                     /db_xref="CDD:197332"
     Site            order(684,727,854)
                     /site_type="other"
                     /note="putative phosphate binding site [ion binding]"
                     /db_xref="CDD:197332"
     Region          862..1004
                     /region_name="RRM_SF"
                     /note="RNA recognition motif (RRM) superfamily; cl17169"
                     /db_xref="CDD:473069"
     CDS             1..1259
                     /gene="SYNJ1"
                     /coded_by="XM_054057848.1:967..4746"
                     /db_xref="GeneID:104064762"
ORIGIN      
        1 mafskgyrvy hkldplpfsv ivetrnreec lmfesgavav lssaekdtik ntyskvmday
       61 gllgvlrlnl gdtllhylvl vtgcmsvgki qdsevfrvts tefvslrids tdedrisevr
      121 kvlnsgnfyf awsatgvsld lslnahrsmq ehttdnrffw nqslhlhlkh ygvncddwll
      181 rlmcggveir tiyaahkqak aclisrlsce ragtrfnvrg tnddghvanf veteqviyld
      241 dsvssfiqir gsvplfweqp glqvgshrvr msrgfeanap afdrhfqtlk nlygkqiivn
      301 llgakegehm lskafqshlk asehaadikm vnfdyhqmvk ggkaeklhsv lkpqvqkfle
      361 cgffyfdgke vkrsqsgtvr tncldcldrt nsvqaffgle mltkqlevlg laekpqlvtr
      421 fqevfrsmws vngdsvskiy agtgalegka kagklkdgar svtrtiqnnf fdsskqeaid
      481 vlllgntlns dladkarall ttsslrasvk vlksmcenfy kyakpkkvrv cvgtwnvngg
      541 kqfrsiafrn qtltdwllda pklagihefq drkskpvdif aigfeemvel nagnivnast
      601 tnqklwaael qktisrdnky vllaseqlvg vclfvfirpq hapfirdvav dtvktgmgga
      661 tgnkgavair mlfhtsslcf vcshfaagqs qvkernedfv eiarklsfpm grmlfshdyi
      721 fwcgdfnyri dipneevkel irqqnwepll agdqlinqkn sgqifrgfle gkinfaptyk
      781 ydlfsddydt sekcrtpawt drilwrrrkw pfdrsaedld llnasfhdds nvpytwnpgt
      841 llhygraelk tsdhrpvval ididifeiea eerqnvykev iamqgppdgt vmvsirgssa
      901 eenyfddnli ddllqkfasy gevilirfve dkmwvtfleg ssalnvmnln gtellgriin
      961 islknpdwir sledemnlek iniglpssts stllcedaev tadydmegdi ddysaeveei
     1021 lpqhlqptss sglgtspsss prsspcqspt lsdgpalpvr psraptktpg ppvsthaefq
     1081 lgtqqkessq slepkrpppp rpvapparpa ppqrppppsv rnqpppstgi sstgtagygt
     1141 trptvpprag visapqshvr psggrpaset qtkpaepprs spllpeplkp qaagpaqptt
     1201 qpppvlrmqe plipvashps qtsapqslep pqppprsrss hslpsesaps qqqqeqpsg
//
LOCUS       XP_053913833             836 aa            linear   VRT 09-MAR-2023
DEFINITION  lysine-specific demethylase RSBN1L isoform X1 [Cuculus canorus].
ACCESSION   XP_053913833
VERSION     XP_053913833.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057858.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..836
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..836
                     /product="lysine-specific demethylase RSBN1L isoform X1"
                     /calculated_mol_wt=93345
     CDS             1..836
                     /gene="RSBN1L"
                     /coded_by="XM_054057858.1:57..2567"
                     /db_xref="GeneID:104059684"
ORIGIN      
        1 maeppspagg aaspepfgtr papdakgsrg sqpaakkmkg aderspkgak rvngeggggk
       61 qalplppivp gfggpaawgf aalpsgsagg fafppplprk llppvllppp ahqhrhhrhr
      121 pglsaeggaa akakrpkekr dkerrkhgtl pavapgdggg lgaagreeng evvklllpka
      181 qikekikere kkqkekkkhk imneikkeng evkllqkggk ekpktnaeel qikkvkkkkk
      241 kkhkenekrk rpkmysksiq ticsglvsdi edqeakgiid dhlkdfsgkn mdpkkdcesk
      301 ipensefpfv slkeprvqnk lkrldtlefk qlihiehqpn ggasvihays nelshlspve
      361 merfaeefvg lvfsenenca ayyvmgivhg aatylpdfld yfsfnfpnsp vkmeilgkkd
      421 ietttmsnfh aqvkrtyshg tyragpmrqi slvgavdeev gdyfpefldm leespflkct
      481 lpwgtlsslk lesrkdsddg pimwvrpgeq mipvadmpks pfkrkrttne iknlqylprt
      541 sepremlfed rtrahadhig qgferqttaa vgvlkavhcg ewseqpritk dvicfhaedf
      601 levvqrmqld lhepplsqcv qwvddaklnq lrregiryar iqlfdndiyf iprnvvhqfk
      661 tvsavcslaw hirlklyhse eelsqntstv eaetsadpks sviglqtdsr ictiskntse
      721 dtklsdalqa kylqqefvpi khepiashri keepvnvdla ektvapndvg gqnvqtrldr
      781 ieltafklem dskfetgnkd lqgklcpggh vhpddtrqhs spypklhgqr eddflc
//
LOCUS       XP_053913839             730 aa            linear   VRT 09-MAR-2023
DEFINITION  lysine-specific demethylase RSBN1L isoform X2 [Cuculus canorus].
ACCESSION   XP_053913839
VERSION     XP_053913839.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057864.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..730
                     /product="lysine-specific demethylase RSBN1L isoform X2"
                     /calculated_mol_wt=81282
     CDS             1..730
                     /gene="RSBN1L"
                     /coded_by="XM_054057864.1:57..2249"
                     /db_xref="GeneID:104059684"
ORIGIN      
        1 maeppspagg aaspepfgtr papdakgsrg sqpaakkmkg aderspkgak rvngeggggk
       61 qalplppivp gfggpaawgf aalpsgsagg fafppplprk llppvllppp ahqhrhhrhr
      121 pglsaeggaa akakrpkekr dkerrkhgtl pavapgdggg lgaagreeng evvklllpka
      181 qikekikere kkqkekkkhk imneikkeng evkllqkggk ekpktnaeel qikkvkkkkk
      241 kkhkenekrk rpkmysksiq ticsglvsdi edqeakgiid dhlkdfsgkn mdpkkdcesk
      301 ipenmkmeil gkkdietttm snfhaqvkrt yshgtyragp mrqislvgav deevgdyfpe
      361 fldmleespf lkctlpwgtl sslklesrkd sddgpimwvr pgeqmipvad mpkspfkrkr
      421 ttneiknlqy lprtseprem lfedrtraha dhigqgferq ttaavgvlka vhcgewseqp
      481 ritkdvicfh aedflevvqr mqldlheppl sqcvqwvdda klnqlrregi ryariqlfdn
      541 diyfiprnvv hqfktvsavc slawhirlkl yhseeelsqn tstveaetsa dpkssviglq
      601 tdsrictisk ntsedtklsd alqakylqqe fvpikhepia shrikeepvn vdlaektvap
      661 ndvggqnvqt rldrieltaf klemdskfet gnkdlqgklc pgghvhpddt rqhsspypkl
      721 hgqreddflc
//
LOCUS       XP_053913846             134 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 60 [Cuculus canorus].
ACCESSION   XP_053913846
VERSION     XP_053913846.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057871.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..134
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..134
                     /product="transmembrane protein 60"
                     /calculated_mol_wt=15511
     Region          25..>134
                     /region_name="TMEM203"
                     /note="Transmembrane protein 203; cl10951"
                     /db_xref="CDD:448049"
     CDS             1..134
                     /gene="TMEM60"
                     /coded_by="XM_054057871.1:153..557"
                     /db_xref="GeneID:104059679"
ORIGIN      
        1 mrmslaqrvl ltwlftllfl imlvlkldek apwnwflifi pvwifdtill vmlvvkmagr
       61 cksgfdprng sqnikkkawy liamllklaf clalcaklqg fttmklayvf iplwalligg
      121 mielgynify vrrd
//
LOCUS       XP_053913851             134 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 60 [Cuculus canorus].
ACCESSION   XP_053913851
VERSION     XP_053913851.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057876.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..134
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..134
                     /product="transmembrane protein 60"
                     /calculated_mol_wt=15511
     Region          25..>134
                     /region_name="TMEM203"
                     /note="Transmembrane protein 203; cl10951"
                     /db_xref="CDD:448049"
     CDS             1..134
                     /gene="TMEM60"
                     /coded_by="XM_054057876.1:167..571"
                     /db_xref="GeneID:104059679"
ORIGIN      
        1 mrmslaqrvl ltwlftllfl imlvlkldek apwnwflifi pvwifdtill vmlvvkmagr
       61 cksgfdprng sqnikkkawy liamllklaf clalcaklqg fttmklayvf iplwalligg
      121 mielgynify vrrd
//
LOCUS       XP_053913857             755 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC104061371 [Cuculus canorus].
ACCESSION   XP_053913857
VERSION     XP_053913857.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057882.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..755
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..755
                     /product="uncharacterized protein LOC104061371"
                     /calculated_mol_wt=82061
     Region          158..208
                     /region_name="YccF"
                     /note="Inner membrane component domain; pfam03733"
                     /db_xref="CDD:461030"
     Region          373..748
                     /region_name="ChaA"
                     /note="Cation (Ca2+/Na+/K+)/H+ antiporter ChaA [Inorganic
                     ion transport and metabolism]; COG0387"
                     /db_xref="CDD:440156"
     CDS             1..755
                     /gene="LOC104061371"
                     /coded_by="XM_054057882.1:83..2350"
                     /db_xref="GeneID:104061371"
ORIGIN      
        1 mspkspsprv tamppdgals atvtappstt crvtsvtwaa tctvpasprv ggpwaglgve
       61 prgvqhplsp rispaavspa tcchqhseev cescvvkttl taenaveank lsnnykfgfk
      121 kwkshvtarp wedrseivke lysdlniirg ssgstmtcgn vlylllfgww lsvlyvlmaa
      181 vmfitivgap ygrlcwalag yflwpfgkvi qeaevpksrr algaheagae asgaressal
      241 lgdpaprwrl rcwagagswh ragtvawlcl aypalalahg lvcvtawlli vlipvaklsa
      301 raavrvlllp pervlvrhlr mtevplegpv ilccyravnp yyykyavdgi nvfavnllpl
      361 vlvtlvlgyv dshnrltssp vkfslallsi mplsyyigma iasisaqsnf avgavvnatf
      421 gsiteltfyi talikgsreg nrcyaeivks altgtlvgcv lfipglcmvi ggirhqeqrf
      481 nsrsagvssa llflsvggvf aptlfskvyg klicgechnv tqnplghylc hschfdlmgs
      541 ngtlyyshvq plvytvslll paayliglff tlkthshiyd ihisdchmpg hhhsavvhws
      601 rwralvilll stlcmsacad latehispil tnstisqyfi gvtvlamvpe lpeivngiqf
      661 alqnnlslsi eignciavqv cmlqipilvl ftvfyptnft lvfsdlhvya smfsvvlmny
      721 ifmdgkcdyf qgtvlvmvyf illavyffap spsgc
//
LOCUS       XP_053913866             561 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 209 isoform X1 [Cuculus canorus].
ACCESSION   XP_053913866
VERSION     XP_053913866.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057891.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..561
                     /product="transmembrane protein 209 isoform X1"
                     /calculated_mol_wt=62651
     Region          11..560
                     /region_name="CytochromB561_N"
                     /note="Cytochrome B561, N terminal; cl46356"
                     /db_xref="CDD:480696"
     CDS             1..561
                     /gene="TMEM209"
                     /coded_by="XM_054057891.1:168..1853"
                     /db_xref="GeneID:104061364"
ORIGIN      
        1 mmtpeqipaa slidrtikmr ketearkvvl awgllnisva gmiytemtgk lissyynity
       61 wplwyielaf aslfslnalf dfwryfkytv aptslvvspg qqtllglrnt avqttpprel
      121 aakkvlsstp sppiqgqsvl syspsrspsa spkfgagcva gyspqlqals gsspygsavt
      181 ylpgssynnk vssfspspsg slyststgqv esgglrsryr sspvlynsps gkedyitdlk
      241 sldtflrnee ekqhrvqlgs sdssspsssp tfwnysrsma dnaqmlrkfq yqlacrsqap
      301 sahkdeadls skqaaeevwa rvtmnrqlld hmdswtakfr nwinetilvp lvqeiesvst
      361 qlrrmgcpel qigeasissl kqaalvkapl iptlntivqy ldltpnqeyl verikelsqg
      421 gcmssfrwnr ggdfkgrkwd tdlptdsaii mhvfctylds rlpphpkypd gktftsqhfi
      481 qtpdkpdtsn envfciyqss inpphyeliy qchvynlpkg rnnmfhtllm flyiiktkes
      541 gmlgrvnlgl sgvnvlwifg e
//
LOCUS       XP_053913872             560 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 209 isoform X2 [Cuculus canorus].
ACCESSION   XP_053913872
VERSION     XP_053913872.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057897.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..560
                     /product="transmembrane protein 209 isoform X2"
                     /calculated_mol_wt=62579
     Region          11..559
                     /region_name="CytochromB561_N"
                     /note="Cytochrome B561, N terminal; cl46356"
                     /db_xref="CDD:480696"
     CDS             1..560
                     /gene="TMEM209"
                     /coded_by="XM_054057897.1:172..1854"
                     /db_xref="GeneID:104061364"
ORIGIN      
        1 mmtpeqipaa slidrtikmr ketearkvvl awgllnisva gmiytemtgk lissyynity
       61 wplwyielaf aslfslnalf dfwryfkytv aptslvvspg qqtllglrnt vqttpprela
      121 akkvlsstps ppiqgqsvls yspsrspsas pkfgagcvag yspqlqalsg sspygsavty
      181 lpgssynnkv ssfspspsgs lyststgqve sgglrsryrs spvlynspsg kedyitdlks
      241 ldtflrneee kqhrvqlgss dssspssspt fwnysrsmad naqmlrkfqy qlacrsqaps
      301 ahkdeadlss kqaaeevwar vtmnrqlldh mdswtakfrn winetilvpl vqeiesvstq
      361 lrrmgcpelq igeasisslk qaalvkapli ptlntivqyl dltpnqeylv erikelsqgg
      421 cmssfrwnrg gdfkgrkwdt dlptdsaiim hvfctyldsr lpphpkypdg ktftsqhfiq
      481 tpdkpdtsne nvfciyqssi npphyeliyq chvynlpkgr nnmfhtllmf lyiiktkesg
      541 mlgrvnlgls gvnvlwifge
//
LOCUS       XP_053913881             469 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger C3HC-type protein 1 [Cuculus canorus].
ACCESSION   XP_053913881
VERSION     XP_053913881.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057906.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..469
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..469
                     /product="zinc finger C3HC-type protein 1"
                     /calculated_mol_wt=51515
     Region          46..174
                     /region_name="zf-C3HC"
                     /note="C3HC zinc finger-like; pfam07967"
                     /db_xref="CDD:429759"
     Region          222..300
                     /region_name="Rsm1"
                     /note="Rsm1-like; pfam08600"
                     /db_xref="CDD:369989"
     CDS             1..469
                     /gene="ZC3HC1"
                     /coded_by="XM_054057906.1:160..1569"
                     /db_xref="GeneID:104061373"
ORIGIN      
        1 maaappqqir allaggiapg agkdtaewse sangssqlda pslestskda yfsrvetftp
       61 lkwagkphel splvcarygw tnvecdllkc sscqaflcvs lqlafdfnky kercaemkka
      121 lctahekfcf wpdspcpdrf amllveepra llqdflerfq slcrlelqlp slrpedmknm
      181 slteekinal lqligeeleh ktegekpstk attetlqvhi pacvlalcgw tcsaasgsvh
      241 lsvitcsrcm rkvglwgfhq lesvglelds cgasiapvap aerfplvpts prrmltrsqd
      301 tpppgsdqhe kslspaisrp rgwdspvsvd rsdvevaspa lrsrpvtrsm gpgdnvevps
      361 splrrakrpr lcsssssdts lrsffdpssq hrdwcpwvna veggealedt aaqtekesak
      421 aepgwravln vllstrdcdr vpetepvsls vksckvfrif rqwesmnss
//
LOCUS       XP_053913892             393 aa            linear   VRT 09-MAR-2023
DEFINITION  kelch domain-containing protein 10 [Cuculus canorus].
ACCESSION   XP_053913892
VERSION     XP_053913892.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057917.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..393
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..393
                     /product="kelch domain-containing protein 10"
                     /calculated_mol_wt=43769
     Region          40..336
                     /region_name="NanM"
                     /note="N-acetylneuraminic acid mutarotase [Cell
                     wall/membrane/envelope biogenesis]; COG3055"
                     /db_xref="CDD:442289"
     Region          43..101
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          105..155
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          159..207
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          211..264
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          267..313
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..393
                     /gene="KLHDC10"
                     /coded_by="XM_054057917.1:32..1213"
                     /db_xref="GeneID:104061372"
ORIGIN      
        1 maaaregsee gggdgpgggs glnrfvqlpg rprsaghrsp parsghrcva dnanlyvfgg
       61 ynpdydesgg penedyplfr elwrynfatd twhqmgtegy mprelasmsl vlhgnnllvf
      121 ggtgipfges ngndvhvcnv kykrwallsc rgkkpnriyg qamaiingcl yvfggttgyv
      181 ystdlhkldl ntrewiqlkp nnmscdmpee ryrheiahdg qriyilgggt swtaysldki
      241 haynletntw eeiatkphek vgfpaarrch scvqikndvf vcggyngevi lgdvwklnlq
      301 tfqwvklpaa mpepvyfhca avtpagcmyv hggvvnihen krtgslfkmw lvvpsllels
      361 weklleyfph latlsrsqll hlgltqglve rlk
//
LOCUS       XP_053913906             664 aa            linear   VRT 09-MAR-2023
DEFINITION  dual specificity protein phosphatase 16 [Cuculus canorus].
ACCESSION   XP_053913906
VERSION     XP_053913906.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057931.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..664
                     /product="dual specificity protein phosphatase 16"
                     /calculated_mol_wt=73560
     Region          10..137
                     /region_name="DSP_MapKP"
                     /note="N-terminal regulatory rhodanese domain of dual
                     specificity phosphatases (DSP), such as Mapk Phosphatase.
                     This domain is believed to determine substrate specificity
                     by binding the substrate, such as ERK2, and activating the
                     C-terminal catalytic domain by...; cd01446"
                     /db_xref="CDD:238723"
     Site            56..58
                     /site_type="active"
                     /note="putative substrate binding residues [active]"
                     /db_xref="CDD:238723"
     Region          158..302
                     /region_name="PTP_DSP_cys"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; cl28904"
                     /db_xref="CDD:475123"
     CDS             1..664
                     /gene="DUSP16"
                     /coded_by="XM_054057931.1:554..2548"
                     /db_xref="GeneID:104062827"
ORIGIN      
        1 mademirtql ivaeklvall esgtekllli dsrpfveynt shildavnin csklmkrrlq
       61 qdkvliteli qhsakhkiei dckqevvvyd qsskdvtsls sdcfltvllg kleknfnsvy
      121 llsggfaefs ssfpglcegk stlvptcisq pclpvsnvgp trilphlylg cqrdvlnkel
      181 mqqndicyvl nasntcpkpd fipeshflrv pvndsfceki lpwldksvdf iekakasngh
      241 vlvhclagis rsatiaiayi mkrmdmslde ayrfvkekrp tispnfnflg qlldfekkik
      301 nqssqpghis klkllhleks sehvvvpegg qsslstnqlc itatseivep kpmdcgsaph
      361 rhlspledgp lvqginglhv sldkvedsnr lkrsfsldik svsysasssr vtasvqgfas
      421 sedtleyykh atalegsgkl cqfspvqevs eqtpetspdk eeanppkktq ntwqlesqsk
      481 rqhlgrtsss attqrsllyp lhrsgsmedn yqtnflfgls tsqqhlaksa aglglkgwhs
      541 dilapqtsat sltnswyfat esshfysasa iygnsaaysa yscsqlptgc dqacavrrrp
      601 kqgdrgdsrr swheessfek qfkrrscqme fgesimsdnr sreelgkvgs qssfsgsmei
      661 ievs
//
LOCUS       XP_053913917             664 aa            linear   VRT 09-MAR-2023
DEFINITION  dual specificity protein phosphatase 16 [Cuculus canorus].
ACCESSION   XP_053913917
VERSION     XP_053913917.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057942.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..664
                     /product="dual specificity protein phosphatase 16"
                     /calculated_mol_wt=73560
     Region          10..137
                     /region_name="DSP_MapKP"
                     /note="N-terminal regulatory rhodanese domain of dual
                     specificity phosphatases (DSP), such as Mapk Phosphatase.
                     This domain is believed to determine substrate specificity
                     by binding the substrate, such as ERK2, and activating the
                     C-terminal catalytic domain by...; cd01446"
                     /db_xref="CDD:238723"
     Site            56..58
                     /site_type="active"
                     /note="putative substrate binding residues [active]"
                     /db_xref="CDD:238723"
     Region          158..302
                     /region_name="PTP_DSP_cys"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; cl28904"
                     /db_xref="CDD:475123"
     CDS             1..664
                     /gene="DUSP16"
                     /coded_by="XM_054057942.1:589..2583"
                     /db_xref="GeneID:104062827"
ORIGIN      
        1 mademirtql ivaeklvall esgtekllli dsrpfveynt shildavnin csklmkrrlq
       61 qdkvliteli qhsakhkiei dckqevvvyd qsskdvtsls sdcfltvllg kleknfnsvy
      121 llsggfaefs ssfpglcegk stlvptcisq pclpvsnvgp trilphlylg cqrdvlnkel
      181 mqqndicyvl nasntcpkpd fipeshflrv pvndsfceki lpwldksvdf iekakasngh
      241 vlvhclagis rsatiaiayi mkrmdmslde ayrfvkekrp tispnfnflg qlldfekkik
      301 nqssqpghis klkllhleks sehvvvpegg qsslstnqlc itatseivep kpmdcgsaph
      361 rhlspledgp lvqginglhv sldkvedsnr lkrsfsldik svsysasssr vtasvqgfas
      421 sedtleyykh atalegsgkl cqfspvqevs eqtpetspdk eeanppkktq ntwqlesqsk
      481 rqhlgrtsss attqrsllyp lhrsgsmedn yqtnflfgls tsqqhlaksa aglglkgwhs
      541 dilapqtsat sltnswyfat esshfysasa iygnsaaysa yscsqlptgc dqacavrrrp
      601 kqgdrgdsrr swheessfek qfkrrscqme fgesimsdnr sreelgkvgs qssfsgsmei
      661 ievs
//
LOCUS       XP_053913928             664 aa            linear   VRT 09-MAR-2023
DEFINITION  dual specificity protein phosphatase 16 [Cuculus canorus].
ACCESSION   XP_053913928
VERSION     XP_053913928.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057953.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..664
                     /product="dual specificity protein phosphatase 16"
                     /calculated_mol_wt=73560
     Region          10..137
                     /region_name="DSP_MapKP"
                     /note="N-terminal regulatory rhodanese domain of dual
                     specificity phosphatases (DSP), such as Mapk Phosphatase.
                     This domain is believed to determine substrate specificity
                     by binding the substrate, such as ERK2, and activating the
                     C-terminal catalytic domain by...; cd01446"
                     /db_xref="CDD:238723"
     Site            56..58
                     /site_type="active"
                     /note="putative substrate binding residues [active]"
                     /db_xref="CDD:238723"
     Region          158..302
                     /region_name="PTP_DSP_cys"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; cl28904"
                     /db_xref="CDD:475123"
     CDS             1..664
                     /gene="DUSP16"
                     /coded_by="XM_054057953.1:500..2494"
                     /db_xref="GeneID:104062827"
ORIGIN      
        1 mademirtql ivaeklvall esgtekllli dsrpfveynt shildavnin csklmkrrlq
       61 qdkvliteli qhsakhkiei dckqevvvyd qsskdvtsls sdcfltvllg kleknfnsvy
      121 llsggfaefs ssfpglcegk stlvptcisq pclpvsnvgp trilphlylg cqrdvlnkel
      181 mqqndicyvl nasntcpkpd fipeshflrv pvndsfceki lpwldksvdf iekakasngh
      241 vlvhclagis rsatiaiayi mkrmdmslde ayrfvkekrp tispnfnflg qlldfekkik
      301 nqssqpghis klkllhleks sehvvvpegg qsslstnqlc itatseivep kpmdcgsaph
      361 rhlspledgp lvqginglhv sldkvedsnr lkrsfsldik svsysasssr vtasvqgfas
      421 sedtleyykh atalegsgkl cqfspvqevs eqtpetspdk eeanppkktq ntwqlesqsk
      481 rqhlgrtsss attqrsllyp lhrsgsmedn yqtnflfgls tsqqhlaksa aglglkgwhs
      541 dilapqtsat sltnswyfat esshfysasa iygnsaaysa yscsqlptgc dqacavrrrp
      601 kqgdrgdsrr swheessfek qfkrrscqme fgesimsdnr sreelgkvgs qssfsgsmei
      661 ievs
//
LOCUS       XP_053913938             664 aa            linear   VRT 09-MAR-2023
DEFINITION  dual specificity protein phosphatase 16 [Cuculus canorus].
ACCESSION   XP_053913938
VERSION     XP_053913938.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057963.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..664
                     /product="dual specificity protein phosphatase 16"
                     /calculated_mol_wt=73560
     Region          10..137
                     /region_name="DSP_MapKP"
                     /note="N-terminal regulatory rhodanese domain of dual
                     specificity phosphatases (DSP), such as Mapk Phosphatase.
                     This domain is believed to determine substrate specificity
                     by binding the substrate, such as ERK2, and activating the
                     C-terminal catalytic domain by...; cd01446"
                     /db_xref="CDD:238723"
     Site            56..58
                     /site_type="active"
                     /note="putative substrate binding residues [active]"
                     /db_xref="CDD:238723"
     Region          158..302
                     /region_name="PTP_DSP_cys"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; cl28904"
                     /db_xref="CDD:475123"
     CDS             1..664
                     /gene="DUSP16"
                     /coded_by="XM_054057963.1:561..2555"
                     /db_xref="GeneID:104062827"
ORIGIN      
        1 mademirtql ivaeklvall esgtekllli dsrpfveynt shildavnin csklmkrrlq
       61 qdkvliteli qhsakhkiei dckqevvvyd qsskdvtsls sdcfltvllg kleknfnsvy
      121 llsggfaefs ssfpglcegk stlvptcisq pclpvsnvgp trilphlylg cqrdvlnkel
      181 mqqndicyvl nasntcpkpd fipeshflrv pvndsfceki lpwldksvdf iekakasngh
      241 vlvhclagis rsatiaiayi mkrmdmslde ayrfvkekrp tispnfnflg qlldfekkik
      301 nqssqpghis klkllhleks sehvvvpegg qsslstnqlc itatseivep kpmdcgsaph
      361 rhlspledgp lvqginglhv sldkvedsnr lkrsfsldik svsysasssr vtasvqgfas
      421 sedtleyykh atalegsgkl cqfspvqevs eqtpetspdk eeanppkktq ntwqlesqsk
      481 rqhlgrtsss attqrsllyp lhrsgsmedn yqtnflfgls tsqqhlaksa aglglkgwhs
      541 dilapqtsat sltnswyfat esshfysasa iygnsaaysa yscsqlptgc dqacavrrrp
      601 kqgdrgdsrr swheessfek qfkrrscqme fgesimsdnr sreelgkvgs qssfsgsmei
      661 ievs
//
LOCUS       XP_053913948             664 aa            linear   VRT 09-MAR-2023
DEFINITION  dual specificity protein phosphatase 16 [Cuculus canorus].
ACCESSION   XP_053913948
VERSION     XP_053913948.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057973.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..664
                     /product="dual specificity protein phosphatase 16"
                     /calculated_mol_wt=73560
     Region          10..137
                     /region_name="DSP_MapKP"
                     /note="N-terminal regulatory rhodanese domain of dual
                     specificity phosphatases (DSP), such as Mapk Phosphatase.
                     This domain is believed to determine substrate specificity
                     by binding the substrate, such as ERK2, and activating the
                     C-terminal catalytic domain by...; cd01446"
                     /db_xref="CDD:238723"
     Site            56..58
                     /site_type="active"
                     /note="putative substrate binding residues [active]"
                     /db_xref="CDD:238723"
     Region          158..302
                     /region_name="PTP_DSP_cys"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; cl28904"
                     /db_xref="CDD:475123"
     CDS             1..664
                     /gene="DUSP16"
                     /coded_by="XM_054057973.1:490..2484"
                     /db_xref="GeneID:104062827"
ORIGIN      
        1 mademirtql ivaeklvall esgtekllli dsrpfveynt shildavnin csklmkrrlq
       61 qdkvliteli qhsakhkiei dckqevvvyd qsskdvtsls sdcfltvllg kleknfnsvy
      121 llsggfaefs ssfpglcegk stlvptcisq pclpvsnvgp trilphlylg cqrdvlnkel
      181 mqqndicyvl nasntcpkpd fipeshflrv pvndsfceki lpwldksvdf iekakasngh
      241 vlvhclagis rsatiaiayi mkrmdmslde ayrfvkekrp tispnfnflg qlldfekkik
      301 nqssqpghis klkllhleks sehvvvpegg qsslstnqlc itatseivep kpmdcgsaph
      361 rhlspledgp lvqginglhv sldkvedsnr lkrsfsldik svsysasssr vtasvqgfas
      421 sedtleyykh atalegsgkl cqfspvqevs eqtpetspdk eeanppkktq ntwqlesqsk
      481 rqhlgrtsss attqrsllyp lhrsgsmedn yqtnflfgls tsqqhlaksa aglglkgwhs
      541 dilapqtsat sltnswyfat esshfysasa iygnsaaysa yscsqlptgc dqacavrrrp
      601 kqgdrgdsrr swheessfek qfkrrscqme fgesimsdnr sreelgkvgs qssfsgsmei
      661 ievs
//
LOCUS       XP_053913952             664 aa            linear   VRT 09-MAR-2023
DEFINITION  dual specificity protein phosphatase 16 [Cuculus canorus].
ACCESSION   XP_053913952
VERSION     XP_053913952.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057977.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..664
                     /product="dual specificity protein phosphatase 16"
                     /calculated_mol_wt=73560
     Region          10..137
                     /region_name="DSP_MapKP"
                     /note="N-terminal regulatory rhodanese domain of dual
                     specificity phosphatases (DSP), such as Mapk Phosphatase.
                     This domain is believed to determine substrate specificity
                     by binding the substrate, such as ERK2, and activating the
                     C-terminal catalytic domain by...; cd01446"
                     /db_xref="CDD:238723"
     Site            56..58
                     /site_type="active"
                     /note="putative substrate binding residues [active]"
                     /db_xref="CDD:238723"
     Region          158..302
                     /region_name="PTP_DSP_cys"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; cl28904"
                     /db_xref="CDD:475123"
     CDS             1..664
                     /gene="DUSP16"
                     /coded_by="XM_054057977.1:550..2544"
                     /db_xref="GeneID:104062827"
ORIGIN      
        1 mademirtql ivaeklvall esgtekllli dsrpfveynt shildavnin csklmkrrlq
       61 qdkvliteli qhsakhkiei dckqevvvyd qsskdvtsls sdcfltvllg kleknfnsvy
      121 llsggfaefs ssfpglcegk stlvptcisq pclpvsnvgp trilphlylg cqrdvlnkel
      181 mqqndicyvl nasntcpkpd fipeshflrv pvndsfceki lpwldksvdf iekakasngh
      241 vlvhclagis rsatiaiayi mkrmdmslde ayrfvkekrp tispnfnflg qlldfekkik
      301 nqssqpghis klkllhleks sehvvvpegg qsslstnqlc itatseivep kpmdcgsaph
      361 rhlspledgp lvqginglhv sldkvedsnr lkrsfsldik svsysasssr vtasvqgfas
      421 sedtleyykh atalegsgkl cqfspvqevs eqtpetspdk eeanppkktq ntwqlesqsk
      481 rqhlgrtsss attqrsllyp lhrsgsmedn yqtnflfgls tsqqhlaksa aglglkgwhs
      541 dilapqtsat sltnswyfat esshfysasa iygnsaaysa yscsqlptgc dqacavrrrp
      601 kqgdrgdsrr swheessfek qfkrrscqme fgesimsdnr sreelgkvgs qssfsgsmei
      661 ievs
//
LOCUS       XP_053913957             664 aa            linear   VRT 09-MAR-2023
DEFINITION  dual specificity protein phosphatase 16 [Cuculus canorus].
ACCESSION   XP_053913957
VERSION     XP_053913957.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057982.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..664
                     /product="dual specificity protein phosphatase 16"
                     /calculated_mol_wt=73560
     Region          10..137
                     /region_name="DSP_MapKP"
                     /note="N-terminal regulatory rhodanese domain of dual
                     specificity phosphatases (DSP), such as Mapk Phosphatase.
                     This domain is believed to determine substrate specificity
                     by binding the substrate, such as ERK2, and activating the
                     C-terminal catalytic domain by...; cd01446"
                     /db_xref="CDD:238723"
     Site            56..58
                     /site_type="active"
                     /note="putative substrate binding residues [active]"
                     /db_xref="CDD:238723"
     Region          158..302
                     /region_name="PTP_DSP_cys"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; cl28904"
                     /db_xref="CDD:475123"
     CDS             1..664
                     /gene="DUSP16"
                     /coded_by="XM_054057982.1:585..2579"
                     /db_xref="GeneID:104062827"
ORIGIN      
        1 mademirtql ivaeklvall esgtekllli dsrpfveynt shildavnin csklmkrrlq
       61 qdkvliteli qhsakhkiei dckqevvvyd qsskdvtsls sdcfltvllg kleknfnsvy
      121 llsggfaefs ssfpglcegk stlvptcisq pclpvsnvgp trilphlylg cqrdvlnkel
      181 mqqndicyvl nasntcpkpd fipeshflrv pvndsfceki lpwldksvdf iekakasngh
      241 vlvhclagis rsatiaiayi mkrmdmslde ayrfvkekrp tispnfnflg qlldfekkik
      301 nqssqpghis klkllhleks sehvvvpegg qsslstnqlc itatseivep kpmdcgsaph
      361 rhlspledgp lvqginglhv sldkvedsnr lkrsfsldik svsysasssr vtasvqgfas
      421 sedtleyykh atalegsgkl cqfspvqevs eqtpetspdk eeanppkktq ntwqlesqsk
      481 rqhlgrtsss attqrsllyp lhrsgsmedn yqtnflfgls tsqqhlaksa aglglkgwhs
      541 dilapqtsat sltnswyfat esshfysasa iygnsaaysa yscsqlptgc dqacavrrrp
      601 kqgdrgdsrr swheessfek qfkrrscqme fgesimsdnr sreelgkvgs qssfsgsmei
      661 ievs
//
LOCUS       XP_053913967             664 aa            linear   VRT 09-MAR-2023
DEFINITION  dual specificity protein phosphatase 16 [Cuculus canorus].
ACCESSION   XP_053913967
VERSION     XP_053913967.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057992.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..664
                     /product="dual specificity protein phosphatase 16"
                     /calculated_mol_wt=73560
     Region          10..137
                     /region_name="DSP_MapKP"
                     /note="N-terminal regulatory rhodanese domain of dual
                     specificity phosphatases (DSP), such as Mapk Phosphatase.
                     This domain is believed to determine substrate specificity
                     by binding the substrate, such as ERK2, and activating the
                     C-terminal catalytic domain by...; cd01446"
                     /db_xref="CDD:238723"
     Site            56..58
                     /site_type="active"
                     /note="putative substrate binding residues [active]"
                     /db_xref="CDD:238723"
     Region          158..302
                     /region_name="PTP_DSP_cys"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; cl28904"
                     /db_xref="CDD:475123"
     CDS             1..664
                     /gene="DUSP16"
                     /coded_by="XM_054057992.1:307..2301"
                     /db_xref="GeneID:104062827"
ORIGIN      
        1 mademirtql ivaeklvall esgtekllli dsrpfveynt shildavnin csklmkrrlq
       61 qdkvliteli qhsakhkiei dckqevvvyd qsskdvtsls sdcfltvllg kleknfnsvy
      121 llsggfaefs ssfpglcegk stlvptcisq pclpvsnvgp trilphlylg cqrdvlnkel
      181 mqqndicyvl nasntcpkpd fipeshflrv pvndsfceki lpwldksvdf iekakasngh
      241 vlvhclagis rsatiaiayi mkrmdmslde ayrfvkekrp tispnfnflg qlldfekkik
      301 nqssqpghis klkllhleks sehvvvpegg qsslstnqlc itatseivep kpmdcgsaph
      361 rhlspledgp lvqginglhv sldkvedsnr lkrsfsldik svsysasssr vtasvqgfas
      421 sedtleyykh atalegsgkl cqfspvqevs eqtpetspdk eeanppkktq ntwqlesqsk
      481 rqhlgrtsss attqrsllyp lhrsgsmedn yqtnflfgls tsqqhlaksa aglglkgwhs
      541 dilapqtsat sltnswyfat esshfysasa iygnsaaysa yscsqlptgc dqacavrrrp
      601 kqgdrgdsrr swheessfek qfkrrscqme fgesimsdnr sreelgkvgs qssfsgsmei
      661 ievs
//
LOCUS       XP_053913978             664 aa            linear   VRT 09-MAR-2023
DEFINITION  dual specificity protein phosphatase 16 [Cuculus canorus].
ACCESSION   XP_053913978
VERSION     XP_053913978.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058003.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..664
                     /product="dual specificity protein phosphatase 16"
                     /calculated_mol_wt=73560
     Region          10..137
                     /region_name="DSP_MapKP"
                     /note="N-terminal regulatory rhodanese domain of dual
                     specificity phosphatases (DSP), such as Mapk Phosphatase.
                     This domain is believed to determine substrate specificity
                     by binding the substrate, such as ERK2, and activating the
                     C-terminal catalytic domain by...; cd01446"
                     /db_xref="CDD:238723"
     Site            56..58
                     /site_type="active"
                     /note="putative substrate binding residues [active]"
                     /db_xref="CDD:238723"
     Region          158..302
                     /region_name="PTP_DSP_cys"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; cl28904"
                     /db_xref="CDD:475123"
     CDS             1..664
                     /gene="DUSP16"
                     /coded_by="XM_054058003.1:342..2336"
                     /db_xref="GeneID:104062827"
ORIGIN      
        1 mademirtql ivaeklvall esgtekllli dsrpfveynt shildavnin csklmkrrlq
       61 qdkvliteli qhsakhkiei dckqevvvyd qsskdvtsls sdcfltvllg kleknfnsvy
      121 llsggfaefs ssfpglcegk stlvptcisq pclpvsnvgp trilphlylg cqrdvlnkel
      181 mqqndicyvl nasntcpkpd fipeshflrv pvndsfceki lpwldksvdf iekakasngh
      241 vlvhclagis rsatiaiayi mkrmdmslde ayrfvkekrp tispnfnflg qlldfekkik
      301 nqssqpghis klkllhleks sehvvvpegg qsslstnqlc itatseivep kpmdcgsaph
      361 rhlspledgp lvqginglhv sldkvedsnr lkrsfsldik svsysasssr vtasvqgfas
      421 sedtleyykh atalegsgkl cqfspvqevs eqtpetspdk eeanppkktq ntwqlesqsk
      481 rqhlgrtsss attqrsllyp lhrsgsmedn yqtnflfgls tsqqhlaksa aglglkgwhs
      541 dilapqtsat sltnswyfat esshfysasa iygnsaaysa yscsqlptgc dqacavrrrp
      601 kqgdrgdsrr swheessfek qfkrrscqme fgesimsdnr sreelgkvgs qssfsgsmei
      661 ievs
//
LOCUS       XP_053913989             664 aa            linear   VRT 09-MAR-2023
DEFINITION  dual specificity protein phosphatase 16 [Cuculus canorus].
ACCESSION   XP_053913989
VERSION     XP_053913989.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058014.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..664
                     /product="dual specificity protein phosphatase 16"
                     /calculated_mol_wt=73560
     Region          10..137
                     /region_name="DSP_MapKP"
                     /note="N-terminal regulatory rhodanese domain of dual
                     specificity phosphatases (DSP), such as Mapk Phosphatase.
                     This domain is believed to determine substrate specificity
                     by binding the substrate, such as ERK2, and activating the
                     C-terminal catalytic domain by...; cd01446"
                     /db_xref="CDD:238723"
     Site            56..58
                     /site_type="active"
                     /note="putative substrate binding residues [active]"
                     /db_xref="CDD:238723"
     Region          158..302
                     /region_name="PTP_DSP_cys"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; cl28904"
                     /db_xref="CDD:475123"
     CDS             1..664
                     /gene="DUSP16"
                     /coded_by="XM_054058014.1:218..2212"
                     /db_xref="GeneID:104062827"
ORIGIN      
        1 mademirtql ivaeklvall esgtekllli dsrpfveynt shildavnin csklmkrrlq
       61 qdkvliteli qhsakhkiei dckqevvvyd qsskdvtsls sdcfltvllg kleknfnsvy
      121 llsggfaefs ssfpglcegk stlvptcisq pclpvsnvgp trilphlylg cqrdvlnkel
      181 mqqndicyvl nasntcpkpd fipeshflrv pvndsfceki lpwldksvdf iekakasngh
      241 vlvhclagis rsatiaiayi mkrmdmslde ayrfvkekrp tispnfnflg qlldfekkik
      301 nqssqpghis klkllhleks sehvvvpegg qsslstnqlc itatseivep kpmdcgsaph
      361 rhlspledgp lvqginglhv sldkvedsnr lkrsfsldik svsysasssr vtasvqgfas
      421 sedtleyykh atalegsgkl cqfspvqevs eqtpetspdk eeanppkktq ntwqlesqsk
      481 rqhlgrtsss attqrsllyp lhrsgsmedn yqtnflfgls tsqqhlaksa aglglkgwhs
      541 dilapqtsat sltnswyfat esshfysasa iygnsaaysa yscsqlptgc dqacavrrrp
      601 kqgdrgdsrr swheessfek qfkrrscqme fgesimsdnr sreelgkvgs qssfsgsmei
      661 ievs
//
LOCUS       XP_053914005             213 aa            linear   VRT 09-MAR-2023
DEFINITION  BLOC-1-related complex subunit 5 isoform X1 [Cuculus canorus].
ACCESSION   XP_053914005
VERSION     XP_053914005.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058030.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..213
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..213
                     /product="BLOC-1-related complex subunit 5 isoform X1"
                     /calculated_mol_wt=24049
     Region          47..203
                     /region_name="BORCS5-like"
                     /note="BLOC-1-related complex subunit 5, and related
                     proteins; cd22789"
                     /db_xref="CDD:439361"
     CDS             1..213
                     /gene="BORCS5"
                     /coded_by="XM_054058030.1:9..650"
                     /db_xref="GeneID:128851174"
ORIGIN      
        1 mpssctrags qagspslevf krqveevltd mvqqwtasps pakqrakmdd ivvvapgtqs
       61 srnvsndpdv iklqeiptfq pllkgllsgq tsptntklek ldpqqvlqlc lryqdhlhqc
      121 aeavafdqna lvkrikemdl svetlysfmq erqkkyakya eqiqkvnems ailrriqmgi
      181 dqtiplmerl nsmlpeserl epfsmkpdre lks
//
LOCUS       XP_053914015             196 aa            linear   VRT 09-MAR-2023
DEFINITION  BLOC-1-related complex subunit 5 isoform X2 [Cuculus canorus].
ACCESSION   XP_053914015
VERSION     XP_053914015.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058040.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..196
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..196
                     /product="BLOC-1-related complex subunit 5 isoform X2"
                     /calculated_mol_wt=21941
     Region          30..186
                     /region_name="BORCS5-like"
                     /note="BLOC-1-related complex subunit 5, and related
                     proteins; cd22789"
                     /db_xref="CDD:439361"
     CDS             1..196
                     /gene="BORCS5"
                     /coded_by="XM_054058040.1:116..706"
                     /db_xref="GeneID:128851174"
ORIGIN      
        1 mgaeqsaeae srpgepsgsa spspakqrak mddivvvapg tqssrnvsnd pdviklqeip
       61 tfqpllkgll sgqtsptntk lekldpqqvl qlclryqdhl hqcaeavafd qnalvkrike
      121 mdlsvetlys fmqerqkkya kyaeqiqkvn emsailrriq mgidqtiplm erlnsmlpes
      181 erlepfsmkp drelks
//
LOCUS       XP_053914029            2212 aa            linear   VRT 09-MAR-2023
DEFINITION  receptor-type tyrosine-protein phosphatase beta isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053914029
VERSION     XP_053914029.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058054.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2212
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2212
                     /product="receptor-type tyrosine-protein phosphatase beta
                     isoform X1"
                     /calculated_mol_wt=247718
     Region          18..132
                     /region_name="beta-trefoil_Ricin_PTPRB-like"
                     /note="ricin B-type lectin domain, beta-trefoil fold,
                     found in receptor-type tyrosine-protein phosphatase beta
                     (PTPRB) isoform e and similar proteins; cd23409"
                     /db_xref="CDD:467787"
     Site            order(33..35,39,41,49..50)
                     /site_type="other"
                     /note="putative sugar binding site [chemical binding]"
                     /db_xref="CDD:467787"
     Site            order(70..71,82,84,89..90)
                     /site_type="other"
                     /note="putative sugar binding site [chemical binding]"
                     /db_xref="CDD:467787"
     Region          322..413
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(322,387,401)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          <387..>575
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(402..403,405..406)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          605..672
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          693..>1013
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(943,1004,1019)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          944..1020
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          1033..1106
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          1120..1193
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          <1183..1557
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(1473,1536,1551)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          1474..1556
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(1552..1553,1555..1556)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Site            order(1567,1629,1644)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          1568..1647
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(1645..1646,1648..1649)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1685..1822
                     /region_name="PTP_tm"
                     /note="TM proximal of protein tyrosine phosphatase,
                     receptor type J; pfam18861"
                     /db_xref="CDD:465889"
     Region          1943..2170
                     /region_name="R-PTPc-B"
                     /note="catalytic domain of receptor-type tyrosine-protein
                     phosphatase B; cd14617"
                     /db_xref="CDD:350465"
     CDS             1..2212
                     /gene="PTPRB"
                     /coded_by="XM_054058054.1:95..6733"
                     /db_xref="GeneID:104063996"
ORIGIN      
        1 mdslfhvlvs tclaltfseg fliiheqkqq clsekrgvim ekcnmtnlnq qwqwtaddrl
       61 lhmkskqcls istrsalssr siivdcpqav rwtchedgll kvansslflt kqgqkvmakq
      121 skkylhtwmq leasetgkpv yvnlcskqdl qdtvtsvpst rptsstlnav tsspenllks
      181 stetfirnvt ehfsknlies lyfdlksavt ekpwlptttf qysstteeaa preaagclas
      241 lmerevsgqs vrlrwgaagp acnfsvagss edgeaagcqp spagngsfgc tlrglsagtw
      301 yqlrieplag geavnislrt dplppprfei nkekttltsl qvqwdppsgk vdlynlvlfd
      361 hdnkkieevs ipgrfsrten tfsslipgnk ykivlsavag nkstpelhis gstvpspvkn
      421 vqvtvktdti haswspgsgh vdryklmlld nhvlvheihq edpltsytfs gltaghsynl
      481 siitqaagle sssfqtvrta paevldltvt nddsldalkv kwrrppgdls fynitlshlg
      541 svkevktlqp lvtethfdkl tpgrlyqvta rtisgelfad rmatgrtfpq kvselkasgg
      601 gwlkslrvnw lppagdwery rlllwnhsal llnttlekev teylihdlgl ipgrqydvdv
      661 ivesgdlqsk tsctgrtape pvlqlrvkha nesslsvmwm tpvaewdsyv vslgdrdltv
      721 ikkglakeak eftftdlvpg rkytatitti sgilsnwtsv egrtvpaqvt gltvtsqgst
      781 nslftnwtra lgdvdsyqvl lihenvvikn etvpsetnry hfyplkpggl ysvvvttvsg
      841 gissrqtiae grtvpssvtg vtvnnsgrsd ylsvswlpas gdvdsylvtl shddqivqsl
      901 tvsksfsecs fssltpgtly nvmittksgk yenysfsqer tvpssvqglt vsnsarsdyl
      961 kvswlhasgy fddyevvikn nndfiqtkti pkdenecvft nlvpgrqysv tvstrsgkye
     1021 tservygrtm pesvkeltls nrstedlqvt wskaegdvdk yeiqllfndm kifppiflgn
     1081 tieeywftal tpgrlykilv ltisgdaqra tfiegltips tvrnihvspn gmtnslkvsw
     1141 tpgsgdvdsy tvtifqqnhq ldsqsvskhv sehtfhklea geqyqvvvqs nsgtlhnsla
     1201 afgrtipapv qellahhayt shsllvtwqk apgvaerydi lllneqgill snksepatsk
     1261 qhkfedllag kkykiqvltv sgglfskrae tvgrtvpaav tnlkvtentt dqlsfswtts
     1321 qgeldsydif lynpdkslhd risgeqqlqn csfqnlrqgr iyrmvivths gdltnessvf
     1381 grtvpapvvg lkasnrnmtd slwftwgpaa gdvdfyeltl ynpngtqket whrkdlkewh
     1441 fqglipgrky tlvvvthsgd ltntanaegr tapsppntvs ftdvantsls itwlgppdwt
     1501 dyddfelqwl pkdpltvfnp yssskskvri iyglrpgrly efsvrtvsgd swktysqsqs
     1561 asvrtkpdki qslhcrpqts taiacswtpp dsdfdgysve ckkmdtreve fskriekdks
     1621 llnimtlvph krylvsikvh sadmtsevve dstitmidrp pqpppdirvn kkevlitkss
     1681 inftfncswf sdtngavkyf tvvvreadgs egpkpdeqhp lpsyleykhn dsihiyqtny
     1741 fasrcaenpd sdyksfdikl ggemenlggr cdpdqqkfcd gplkprtayr isiraftqlf
     1801 sedpkelpkp lfadtffslp itteaeplfg viegvsaglf livmlvavta livcrqkvgs
     1861 gherttprln irrdrplsvh lnlgqkgnrk tsspikvshf eahftklqad snyllskeye
     1921 dlkdvgrnqt cdiallpenr gknrynnilp ydtsrvklsn vdddpcsdyi nasyipgnnf
     1981 rreyiatqgp lpgtkdefwk maweqnvhni vmvtqcvekg rvkcdhywpl dqdslyygdl
     2041 ivemlsesvl pewtirefki cseeqldltr lirhfhytvw pdhgvpettq sliqfvrtvr
     2101 dyinrtpdtg ptvvhcsagv grtgtfiald rilqqldskd tvdiyaavhd lrlhrvhmvq
     2161 tecqyvylhq cvrdvlrark lrseqenplf piyenvnpey hraeeqdrwe iv
//
LOCUS       XP_053914037            2209 aa            linear   VRT 09-MAR-2023
DEFINITION  receptor-type tyrosine-protein phosphatase beta isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053914037
VERSION     XP_053914037.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058062.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2209
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2209
                     /product="receptor-type tyrosine-protein phosphatase beta
                     isoform X2"
                     /calculated_mol_wt=247290
     Region          18..132
                     /region_name="beta-trefoil_Ricin_PTPRB-like"
                     /note="ricin B-type lectin domain, beta-trefoil fold,
                     found in receptor-type tyrosine-protein phosphatase beta
                     (PTPRB) isoform e and similar proteins; cd23409"
                     /db_xref="CDD:467787"
     Site            order(33..35,39,41,49..50)
                     /site_type="other"
                     /note="putative sugar binding site [chemical binding]"
                     /db_xref="CDD:467787"
     Site            order(70..71,82,84,89..90)
                     /site_type="other"
                     /note="putative sugar binding site [chemical binding]"
                     /db_xref="CDD:467787"
     Region          322..413
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(322,387,401)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          <387..>575
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(402..403,405..406)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          605..672
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          693..>1013
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(943,1004,1019)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          944..1020
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          1033..1106
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          1120..1193
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          <1183..1557
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(1473,1536,1551)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          1474..1556
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(1552..1553,1555..1556)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Site            order(1567,1629,1644)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          1568..1647
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(1645..1646,1648..1649)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1685..1822
                     /region_name="PTP_tm"
                     /note="TM proximal of protein tyrosine phosphatase,
                     receptor type J; pfam18861"
                     /db_xref="CDD:465889"
     Region          1943..2170
                     /region_name="R-PTPc-B"
                     /note="catalytic domain of receptor-type tyrosine-protein
                     phosphatase B; cd14617"
                     /db_xref="CDD:350465"
     CDS             1..2209
                     /gene="PTPRB"
                     /coded_by="XM_054058062.1:95..6724"
                     /db_xref="GeneID:104063996"
ORIGIN      
        1 mdslfhvlvs tclaltfseg fliiheqkqq clsekrgvim ekcnmtnlnq qwqwtaddrl
       61 lhmkskqcls istrsalssr siivdcpqav rwtchedgll kvansslflt kqgqkvmakq
      121 skkylhtwmq leasetgkpv yvnlcskqdl qdtvtsvpst rptsstlnav tsspenllks
      181 stetfirnvt ehfsknlies lyfdlksavt ekpwlptttf qysstteeaa preaagclas
      241 lmerevsgqs vrlrwgaagp acnfsvagss edgeaagcqp spagngsfgc tlrglsagtw
      301 yqlrieplag geavnislrt dplppprfei nkekttltsl qvqwdppsgk vdlynlvlfd
      361 hdnkkieevs ipgrfsrten tfsslipgnk ykivlsavag nkstpelhis gstvpspvkn
      421 vqvtvktdti haswspgsgh vdryklmlld nhvlvheihq edpltsytfs gltaghsynl
      481 siitqaagle sssfqtvrta paevldltvt nddsldalkv kwrrppgdls fynitlshlg
      541 svkevktlqp lvtethfdkl tpgrlyqvta rtisgelfad rmatgrtfpq kvselkasgg
      601 gwlkslrvnw lppagdwery rlllwnhsal llnttlekev teylihdlgl ipgrqydvdv
      661 ivesgdlqsk tsctgrtape pvlqlrvkha nesslsvmwm tpvaewdsyv vslgdrdltv
      721 ikkglakeak eftftdlvpg rkytatitti sgilsnwtsv egrtvpaqvt gltvtsqgst
      781 nslftnwtra lgdvdsyqvl lihenvvikn etvpsetnry hfyplkpggl ysvvvttvsg
      841 gissrqtiae grtvpssvtg vtvnnsgrsd ylsvswlpas gdvdsylvtl shddqivqsl
      901 tvsksfsecs fssltpgtly nvmittksgk yenysfsqer tvpssvqglt vsnsarsdyl
      961 kvswlhasgy fddyevvikn nndfiqtkti pkdenecvft nlvpgrqysv tvstrsgkye
     1021 tservygrtm pesvkeltls nrstedlqvt wskaegdvdk yeiqllfndm kifppiflgn
     1081 tieeywftal tpgrlykilv ltisgdaqra tfiegltips tvrnihvspn gmtnslkvsw
     1141 tpgsgdvdsy tvtifqqnhq ldsqsvskhv sehtfhklea geqyqvvvqs nsgtlhnsla
     1201 afgrtipapv qellahhayt shsllvtwqk apgvaerydi lllneqgill snksepatsk
     1261 qhkfedllag kkykiqvltv sgglfskrae tvgrtvpaav tnlkvtentt dqlsfswtts
     1321 qgeldsydif lynpdkslhd risgeqqlqn csfqnlrqgr iyrmvivths gdltnessvf
     1381 grtvpapvvg lkasnrnmtd slwftwgpaa gdvdfyeltl ynpngtqket whrkdlkewh
     1441 fqglipgrky tlvvvthsgd ltntanaegr tapsppntvs ftdvantsls itwlgppdwt
     1501 dyddfelqwl pkdpltvfnp yssskskvri iyglrpgrly efsvrtvsgd swktysqsqs
     1561 asvrtkpdki qslhcrpqts taiacswtpp dsdfdgysve ckkmdtreve fskriekdks
     1621 llnimtlvph krylvsikvh sadmtsevve dstitmidrp pqpppdirvn kkevlitkss
     1681 inftfncswf sdtngavkyf tvvvreadgs egpkpdeqhp lpsyleykhn dsihiyqtny
     1741 fasrcaenpd sdyksfdikl ggemenlggr cdpdqqkfcd gplkprtayr isiraftqlf
     1801 sedpkelpkp lfadtffslp itteaeplfg viegvsaglf livmlvavta livcrqkvgs
     1861 gherttprln irrdrplsvh lnlgqkgnrk tsspikvshf eahftklqad snyllskeye
     1921 dlkdvgrnqt cdiallpenr gknrynnilp ydtsrvklsn vdddpcsdyi nasyipgnnf
     1981 rreyiatqgp lpgtkdefwk maweqnvhni vmvtqcvekg rvkcdhywpl dqdslyygdl
     2041 ivemlsesvl pewtirefki cseeqldltr lirhfhytvw pdhgvpettq sliqfvrtvr
     2101 dyinrtpdtg ptvvhcsagv grtgtfiald rilqqldskd tvdiyaavhd lrlhrvhmvq
     2161 tecqyvylhq cvrdvlrark lrseqenplf piyenvnpey hrdavysrh
//
LOCUS       XP_053914045            2126 aa            linear   VRT 09-MAR-2023
DEFINITION  receptor-type tyrosine-protein phosphatase beta isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053914045
VERSION     XP_053914045.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058070.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2126
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2126
                     /product="receptor-type tyrosine-protein phosphatase beta
                     isoform X3"
                     /calculated_mol_wt=238318
     Region          18..132
                     /region_name="beta-trefoil_Ricin_PTPRB-like"
                     /note="ricin B-type lectin domain, beta-trefoil fold,
                     found in receptor-type tyrosine-protein phosphatase beta
                     (PTPRB) isoform e and similar proteins; cd23409"
                     /db_xref="CDD:467787"
     Site            order(33..35,39,41,49..50)
                     /site_type="other"
                     /note="putative sugar binding site [chemical binding]"
                     /db_xref="CDD:467787"
     Site            order(70..71,82,84,89..90)
                     /site_type="other"
                     /note="putative sugar binding site [chemical binding]"
                     /db_xref="CDD:467787"
     Region          322..413
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(322,387,401)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(402..403,405..406)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Site            order(415,476,489)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          420..490
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          519..586
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          607..>927
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(857,918,933)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          858..934
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          947..1020
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          1034..1107
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          <1097..1471
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(1387,1450,1465)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          1388..1470
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(1466..1467,1469..1470)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Site            order(1481,1543,1558)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          1482..1561
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(1559..1560,1562..1563)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1599..1736
                     /region_name="PTP_tm"
                     /note="TM proximal of protein tyrosine phosphatase,
                     receptor type J; pfam18861"
                     /db_xref="CDD:465889"
     Region          1857..2084
                     /region_name="R-PTPc-B"
                     /note="catalytic domain of receptor-type tyrosine-protein
                     phosphatase B; cd14617"
                     /db_xref="CDD:350465"
     CDS             1..2126
                     /gene="PTPRB"
                     /coded_by="XM_054058070.1:95..6475"
                     /db_xref="GeneID:104063996"
ORIGIN      
        1 mdslfhvlvs tclaltfseg fliiheqkqq clsekrgvim ekcnmtnlnq qwqwtaddrl
       61 lhmkskqcls istrsalssr siivdcpqav rwtchedgll kvansslflt kqgqkvmakq
      121 skkylhtwmq leasetgkpv yvnlcskqdl qdtvtsvpst rptsstlnav tsspenllks
      181 stetfirnvt ehfsknlies lyfdlksavt ekpwlptttf qysstteeaa preaagclas
      241 lmerevsgqs vrlrwgaagp acnfsvagss edgeaagcqp spagngsfgc tlrglsagtw
      301 yqlrieplag geavnislrt dplppprfei nkekttltsl qvqwdppsgk vdlynlvlfd
      361 hdnkkieevs ipgrfsrten tfsslipgnk ykivlsavag nkstpelhis gstapaevld
      421 ltvtnddsld alkvkwrrpp gdlsfynitl shlgsvkevk tlqplvteth fdkltpgrly
      481 qvtartisge lfadrmatgr tfpqkvselk asgggwlksl rvnwlppagd weryrlllwn
      541 hsalllnttl ekevteylih dlglipgrqy dvdvivesgd lqsktsctgr tapepvlqlr
      601 vkhanessls vmwmtpvaew dsyvvslgdr dltvikkgla keakeftftd lvpgrkytat
      661 ittisgilsn wtsvegrtvp aqvtgltvts qgstnslftn wtralgdvds yqvllihenv
      721 viknetvpse tnryhfyplk pgglysvvvt tvsggissrq tiaegrtvps svtgvtvnns
      781 grsdylsvsw lpasgdvdsy lvtlshddqi vqsltvsksf secsfssltp gtlynvmitt
      841 ksgkyenysf sqertvpssv qgltvsnsar sdylkvswlh asgyfddyev viknnndfiq
      901 tktipkdene cvftnlvpgr qysvtvstrs gkyetservy grtmpesvke ltlsnrsted
      961 lqvtwskaeg dvdkyeiqll fndmkifppi flgntieeyw ftaltpgrly kilvltisgd
     1021 aqratfiegl tipstvrnih vspngmtnsl kvswtpgsgd vdsytvtifq qnhqldsqsv
     1081 skhvsehtfh kleageqyqv vvqsnsgtlh nslaafgrti papvqellah haytshsllv
     1141 twqkapgvae rydilllneq gillsnksep atskqhkfed llagkkykiq vltvsgglfs
     1201 kraetvgrtv paavtnlkvt enttdqlsfs wttsqgelds ydiflynpdk slhdrisgeq
     1261 qlqncsfqnl rqgriyrmvi vthsgdltne ssvfgrtvpa pvvglkasnr nmtdslwftw
     1321 gpaagdvdfy eltlynpngt qketwhrkdl kewhfqglip grkytlvvvt hsgdltntan
     1381 aegrtapspp ntvsftdvan tslsitwlgp pdwtdyddfe lqwlpkdplt vfnpysssks
     1441 kvriiyglrp grlyefsvrt vsgdswktys qsqsasvrtk pdkiqslhcr pqtstaiacs
     1501 wtppdsdfdg ysveckkmdt revefskrie kdksllnimt lvphkrylvs ikvhsadmts
     1561 evvedstitm idrppqpppd irvnkkevli tkssinftfn cswfsdtnga vkyftvvvre
     1621 adgsegpkpd eqhplpsyle ykhndsihiy qtnyfasrca enpdsdyksf diklggemen
     1681 lggrcdpdqq kfcdgplkpr tayrisiraf tqlfsedpke lpkplfadtf fslpitteae
     1741 plfgviegvs aglflivmlv avtalivcrq kvgsghertt prlnirrdrp lsvhlnlgqk
     1801 gnrktsspik vshfeahftk lqadsnylls keyedlkdvg rnqtcdiall penrgknryn
     1861 nilpydtsrv klsnvdddpc sdyinasyip gnnfrreyia tqgplpgtkd efwkmaweqn
     1921 vhnivmvtqc vekgrvkcdh ywpldqdsly ygdlivemls esvlpewtir efkicseeql
     1981 dltrlirhfh ytvwpdhgvp ettqsliqfv rtvrdyinrt pdtgptvvhc sagvgrtgtf
     2041 ialdrilqql dskdtvdiya avhdlrlhrv hmvqtecqyv ylhqcvrdvl rarklrseqe
     2101 nplfpiyenv npeyhraeeq drweiv
//
LOCUS       XP_053914055            2002 aa            linear   VRT 09-MAR-2023
DEFINITION  receptor-type tyrosine-protein phosphatase beta isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053914055
VERSION     XP_053914055.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058080.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2002
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2002
                     /product="receptor-type tyrosine-protein phosphatase beta
                     isoform X4"
                     /calculated_mol_wt=223779
     Region          112..203
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(112,177,191)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          <177..>365
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(192..193,195..196)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          395..462
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          483..>803
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(733,794,809)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          734..810
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          823..896
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          910..983
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          <973..1347
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(1263,1326,1341)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          1264..1346
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(1342..1343,1345..1346)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Site            order(1357,1419,1434)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          1358..1437
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(1435..1436,1438..1439)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1475..1612
                     /region_name="PTP_tm"
                     /note="TM proximal of protein tyrosine phosphatase,
                     receptor type J; pfam18861"
                     /db_xref="CDD:465889"
     Region          1733..1960
                     /region_name="R-PTPc-B"
                     /note="catalytic domain of receptor-type tyrosine-protein
                     phosphatase B; cd14617"
                     /db_xref="CDD:350465"
     CDS             1..2002
                     /gene="PTPRB"
                     /coded_by="XM_054058080.1:129..6137"
                     /db_xref="GeneID:104063996"
ORIGIN      
        1 mlsygagfal wtalaltkaa preaagclas lmerevsgqs vrlrwgaagp acnfsvagss
       61 edgeaagcqp spagngsfgc tlrglsagtw yqlrieplag geavnislrt dplppprfei
      121 nkekttltsl qvqwdppsgk vdlynlvlfd hdnkkieevs ipgrfsrten tfsslipgnk
      181 ykivlsavag nkstpelhis gstvpspvkn vqvtvktdti haswspgsgh vdryklmlld
      241 nhvlvheihq edpltsytfs gltaghsynl siitqaagle sssfqtvrta paevldltvt
      301 nddsldalkv kwrrppgdls fynitlshlg svkevktlqp lvtethfdkl tpgrlyqvta
      361 rtisgelfad rmatgrtfpq kvselkasgg gwlkslrvnw lppagdwery rlllwnhsal
      421 llnttlekev teylihdlgl ipgrqydvdv ivesgdlqsk tsctgrtape pvlqlrvkha
      481 nesslsvmwm tpvaewdsyv vslgdrdltv ikkglakeak eftftdlvpg rkytatitti
      541 sgilsnwtsv egrtvpaqvt gltvtsqgst nslftnwtra lgdvdsyqvl lihenvvikn
      601 etvpsetnry hfyplkpggl ysvvvttvsg gissrqtiae grtvpssvtg vtvnnsgrsd
      661 ylsvswlpas gdvdsylvtl shddqivqsl tvsksfsecs fssltpgtly nvmittksgk
      721 yenysfsqer tvpssvqglt vsnsarsdyl kvswlhasgy fddyevvikn nndfiqtkti
      781 pkdenecvft nlvpgrqysv tvstrsgkye tservygrtm pesvkeltls nrstedlqvt
      841 wskaegdvdk yeiqllfndm kifppiflgn tieeywftal tpgrlykilv ltisgdaqra
      901 tfiegltips tvrnihvspn gmtnslkvsw tpgsgdvdsy tvtifqqnhq ldsqsvskhv
      961 sehtfhklea geqyqvvvqs nsgtlhnsla afgrtipapv qellahhayt shsllvtwqk
     1021 apgvaerydi lllneqgill snksepatsk qhkfedllag kkykiqvltv sgglfskrae
     1081 tvgrtvpaav tnlkvtentt dqlsfswtts qgeldsydif lynpdkslhd risgeqqlqn
     1141 csfqnlrqgr iyrmvivths gdltnessvf grtvpapvvg lkasnrnmtd slwftwgpaa
     1201 gdvdfyeltl ynpngtqket whrkdlkewh fqglipgrky tlvvvthsgd ltntanaegr
     1261 tapsppntvs ftdvantsls itwlgppdwt dyddfelqwl pkdpltvfnp yssskskvri
     1321 iyglrpgrly efsvrtvsgd swktysqsqs asvrtkpdki qslhcrpqts taiacswtpp
     1381 dsdfdgysve ckkmdtreve fskriekdks llnimtlvph krylvsikvh sadmtsevve
     1441 dstitmidrp pqpppdirvn kkevlitkss inftfncswf sdtngavkyf tvvvreadgs
     1501 egpkpdeqhp lpsyleykhn dsihiyqtny fasrcaenpd sdyksfdikl ggemenlggr
     1561 cdpdqqkfcd gplkprtayr isiraftqlf sedpkelpkp lfadtffslp itteaeplfg
     1621 viegvsaglf livmlvavta livcrqkvgs gherttprln irrdrplsvh lnlgqkgnrk
     1681 tsspikvshf eahftklqad snyllskeye dlkdvgrnqt cdiallpenr gknrynnilp
     1741 ydtsrvklsn vdddpcsdyi nasyipgnnf rreyiatqgp lpgtkdefwk maweqnvhni
     1801 vmvtqcvekg rvkcdhywpl dqdslyygdl ivemlsesvl pewtirefki cseeqldltr
     1861 lirhfhytvw pdhgvpettq sliqfvrtvr dyinrtpdtg ptvvhcsagv grtgtfiald
     1921 rilqqldskd tvdiyaavhd lrlhrvhmvq tecqyvylhq cvrdvlrark lrseqenplf
     1981 piyenvnpey hraeeqdrwe iv
//
LOCUS       XP_053914062            1999 aa            linear   VRT 09-MAR-2023
DEFINITION  receptor-type tyrosine-protein phosphatase beta isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053914062
VERSION     XP_053914062.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058087.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1999
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1999
                     /product="receptor-type tyrosine-protein phosphatase beta
                     isoform X5"
                     /calculated_mol_wt=223352
     Region          112..203
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(112,177,191)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          <177..>365
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(192..193,195..196)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          395..462
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          483..>803
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(733,794,809)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          734..810
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          823..896
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          910..983
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          <973..1347
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(1263,1326,1341)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          1264..1346
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(1342..1343,1345..1346)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Site            order(1357,1419,1434)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          1358..1437
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(1435..1436,1438..1439)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1475..1612
                     /region_name="PTP_tm"
                     /note="TM proximal of protein tyrosine phosphatase,
                     receptor type J; pfam18861"
                     /db_xref="CDD:465889"
     Region          1733..1960
                     /region_name="R-PTPc-B"
                     /note="catalytic domain of receptor-type tyrosine-protein
                     phosphatase B; cd14617"
                     /db_xref="CDD:350465"
     CDS             1..1999
                     /gene="PTPRB"
                     /coded_by="XM_054058087.1:129..6128"
                     /db_xref="GeneID:104063996"
ORIGIN      
        1 mlsygagfal wtalaltkaa preaagclas lmerevsgqs vrlrwgaagp acnfsvagss
       61 edgeaagcqp spagngsfgc tlrglsagtw yqlrieplag geavnislrt dplppprfei
      121 nkekttltsl qvqwdppsgk vdlynlvlfd hdnkkieevs ipgrfsrten tfsslipgnk
      181 ykivlsavag nkstpelhis gstvpspvkn vqvtvktdti haswspgsgh vdryklmlld
      241 nhvlvheihq edpltsytfs gltaghsynl siitqaagle sssfqtvrta paevldltvt
      301 nddsldalkv kwrrppgdls fynitlshlg svkevktlqp lvtethfdkl tpgrlyqvta
      361 rtisgelfad rmatgrtfpq kvselkasgg gwlkslrvnw lppagdwery rlllwnhsal
      421 llnttlekev teylihdlgl ipgrqydvdv ivesgdlqsk tsctgrtape pvlqlrvkha
      481 nesslsvmwm tpvaewdsyv vslgdrdltv ikkglakeak eftftdlvpg rkytatitti
      541 sgilsnwtsv egrtvpaqvt gltvtsqgst nslftnwtra lgdvdsyqvl lihenvvikn
      601 etvpsetnry hfyplkpggl ysvvvttvsg gissrqtiae grtvpssvtg vtvnnsgrsd
      661 ylsvswlpas gdvdsylvtl shddqivqsl tvsksfsecs fssltpgtly nvmittksgk
      721 yenysfsqer tvpssvqglt vsnsarsdyl kvswlhasgy fddyevvikn nndfiqtkti
      781 pkdenecvft nlvpgrqysv tvstrsgkye tservygrtm pesvkeltls nrstedlqvt
      841 wskaegdvdk yeiqllfndm kifppiflgn tieeywftal tpgrlykilv ltisgdaqra
      901 tfiegltips tvrnihvspn gmtnslkvsw tpgsgdvdsy tvtifqqnhq ldsqsvskhv
      961 sehtfhklea geqyqvvvqs nsgtlhnsla afgrtipapv qellahhayt shsllvtwqk
     1021 apgvaerydi lllneqgill snksepatsk qhkfedllag kkykiqvltv sgglfskrae
     1081 tvgrtvpaav tnlkvtentt dqlsfswtts qgeldsydif lynpdkslhd risgeqqlqn
     1141 csfqnlrqgr iyrmvivths gdltnessvf grtvpapvvg lkasnrnmtd slwftwgpaa
     1201 gdvdfyeltl ynpngtqket whrkdlkewh fqglipgrky tlvvvthsgd ltntanaegr
     1261 tapsppntvs ftdvantsls itwlgppdwt dyddfelqwl pkdpltvfnp yssskskvri
     1321 iyglrpgrly efsvrtvsgd swktysqsqs asvrtkpdki qslhcrpqts taiacswtpp
     1381 dsdfdgysve ckkmdtreve fskriekdks llnimtlvph krylvsikvh sadmtsevve
     1441 dstitmidrp pqpppdirvn kkevlitkss inftfncswf sdtngavkyf tvvvreadgs
     1501 egpkpdeqhp lpsyleykhn dsihiyqtny fasrcaenpd sdyksfdikl ggemenlggr
     1561 cdpdqqkfcd gplkprtayr isiraftqlf sedpkelpkp lfadtffslp itteaeplfg
     1621 viegvsaglf livmlvavta livcrqkvgs gherttprln irrdrplsvh lnlgqkgnrk
     1681 tsspikvshf eahftklqad snyllskeye dlkdvgrnqt cdiallpenr gknrynnilp
     1741 ydtsrvklsn vdddpcsdyi nasyipgnnf rreyiatqgp lpgtkdefwk maweqnvhni
     1801 vmvtqcvekg rvkcdhywpl dqdslyygdl ivemlsesvl pewtirefki cseeqldltr
     1861 lirhfhytvw pdhgvpettq sliqfvrtvr dyinrtpdtg ptvvhcsagv grtgtfiald
     1921 rilqqldskd tvdiyaavhd lrlhrvhmvq tecqyvylhq cvrdvlrark lrseqenplf
     1981 piyenvnpey hrdavysrh
//
LOCUS       XP_053914073             658 aa            linear   VRT 09-MAR-2023
DEFINITION  receptor-type tyrosine-protein phosphatase R [Cuculus canorus].
ACCESSION   XP_053914073
VERSION     XP_053914073.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058098.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..658
                     /product="receptor-type tyrosine-protein phosphatase R"
                     /calculated_mol_wt=73886
     Region          418..643
                     /region_name="R-PTPc-R"
                     /note="catalytic domain of receptor-type tyrosine-protein
                     phosphatase R; cd14611"
                     /db_xref="CDD:350459"
     CDS             1..658
                     /gene="PTPRR"
                     /coded_by="XM_054058098.1:87..2063"
                     /db_xref="GeneID:104064006"
ORIGIN      
        1 mrraaaclra lclllhlrsa gcfsgdndhf laihhrksgk pvfiyhhvqs veksldtdsy
       61 knskqnfhsg shnkisklhp aiivkstfpr paydpslnll amtgqdleve nlpipatnvi
      121 vvtlqmdvnk lnitllrifr qgvaaalgll pqqvhinrli gqkncvelfv splnrkpgis
      181 ealpseevlr slninilhqs lsqfgitevs peknvlqgqr eadkiwskeg fyavviflsi
      241 fvilvtclmv lyrlkekiql slrqekekkq eihlsplplq tshsgykttn rmvqpeqapk
      301 vvnvvvdpqg qcvpelkppl caspspfrmk pvglqerrgs nvsltldmss lgsvepfvtv
      361 ptprekvame ylqsagrilt rqqlrdtvac shllqtefme ipmnfvdpke idipshgtkn
      421 ryrtilpnpl srvylkpknp sdslstyina nyirgyggke kafiatqgpm intvndfwqm
      481 vwqedspviv mitklkekne kcvlywpekr giygkvevlv dsvqecenyt vrqltikqgs
      541 qsqsvkhywy tswpdhktpd saqpllqlml dveedrvesp grgpvivhcs agigrtgcfi
      601 ataigcqqlk eegvvdalsi vcqlrmdrgg mvqtseqyef vhhalslyes rlsaeavq
//
LOCUS       XP_053914081            1960 aa            linear   VRT 09-MAR-2023
DEFINITION  myosin-9 [Cuculus canorus].
ACCESSION   XP_053914081
VERSION     XP_053914081.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058106.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1960
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1960
                     /product="myosin-9"
                     /calculated_mol_wt=226567
     Region          27..72
                     /region_name="Myosin_N"
                     /note="Myosin N-terminal SH3-like domain; pfam02736"
                     /db_xref="CDD:460670"
     Region          95..764
                     /region_name="Motor_domain"
                     /note="Myosin and Kinesin motor domain; cl22853"
                     /db_xref="CDD:473979"
     Site            order(122..123,174..181,224..225,452..457)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:276952"
     Region          841..1921
                     /region_name="Myosin_tail_1"
                     /note="Myosin tail; pfam01576"
                     /db_xref="CDD:460256"
     CDS             1..1960
                     /gene="MYH9"
                     /coded_by="XM_054058106.1:180..6062"
                     /db_xref="GeneID:104065851"
ORIGIN      
        1 msqrdadkyl yvdkniinnp ltqadwaakk lvwvpsekng feaaslkeev gdeaivelae
       61 ngkkvkvnkd diqkmnppkf skvedmaelt clneasvlhn lkeryysgli ytysglfcvv
      121 inpyknlpiy seeivemykg kkrhempphi yaitdtayrs mmqdredqsi lctgesgagk
      181 tentkkviqy lahvasshks kkdqgelerq llqanpilea fgnaktvknd nssrfgkfir
      241 infdvngyiv ganietylle ksrairqake ertfhifyyl lsgagehlkt dlllepynky
      301 rflsnghvti pgqqdkdmfq etmeamkimg ipdeeqmgll kvisgvlqlg nivfkkernt
      361 dqasmpdnta aqkvshllgi nvtdftrgil tprikvgrdy vqkaqtkeqa dfaiealaka
      421 tyermfrwlv mrinkaldkt krqgasfigi ldiagfeife lnsfeqlcin ytneklqqlf
      481 nhtmfileqe eyqregiewn fidfgldlqp cidliekpag ppgilallde ecwfpkatdk
      541 sfvekvvqeq gthpkfqkpk qlkdkadfci ihyagkvdyk adewlmknmd plndniatll
      601 hqssdkfvse lwkdvdrivg ldqvagmsdt alpgafktrk gmfrtvgqly keqlaklmat
      661 lrntnpnfvr ciipnhekka gkldphlvld qlrcngvleg iricrqgfpn rivfqefrqr
      721 yeiltpnaip kgfmdgkqac vlmikaleld pnlyrigqsk vffragvlah leeerdlkit
      781 dviigfqacc rgylarkafa krqqqltamk vlqrncaayl klrnwqwwrl ftkvkpllqv
      841 srqeeemmak eeelmkvkek qlaaenrlse letfqaqlma ekmqlqeqlq aetelcaeae
      901 eirarltakk qeleeichdl earveeeeer cqhlqaekkk mqqniqelee qleeeesarq
      961 klqlekvtte aklkkieedv lvledqnlkl akekklledr isefttnlte eeekskslak
     1021 lknkheamit dleerlrree kqrqelektr rklegdstdl hdqiaelqaq iaelkmqlak
     1081 keeelqaala rveeeaaqkn malkkirele sqitelqedl eserasrnka ekqkrdlgee
     1141 lealkteled tldstaaqqe lrskreqevt vlkktleeea ktheaqiqei rqkhsqaiee
     1201 laeqleqtkr vkanlekakq aleseraels nevkvllqgk gdaehkrkkv etqlqelqvk
     1261 ftegervkae laervnklqv eldnvtglln qsdsksikla kdfsamesql qdtqellqee
     1321 trlklslstk lkqmedekns lkeqleeeee tkrnlekqis vlqqqaidak kkmddglgcl
     1381 esaeearkkl qkdlealsqr yeektaaydk lektktrlqq elddlavdld hqrqivsnle
     1441 kkqkkfdqll aeeknisaky aeerdraeae areketkals laraleeaie qkaelerink
     1501 qfraemedlm sskddvgksv helekakral eqqveemktq leeledelqa tedaklrlev
     1561 nqqamkaqfd rdlqgrdeqn eekkkqlirq vremeveled erkqrsiava arkklemdlk
     1621 dleghidtan knreeaikql rklqaqmkdy mreledtrts reeilaqake nekklksmea
     1681 emiqlqeela aaerakrqaq qerdeladei annsgkgala meekrrlear iaqleeelee
     1741 eqgnteiind rlkkanlqid qmnadlnaer snaqknenar qqmerqnkel klklqemesa
     1801 vkskykatit aleakiaqle eqldmetker qaaskqvrra ekklkdillq vdderrnaeq
     1861 fkdqadkani rlkqlkrqle eaeeeaqran asrrklqrel edatetadam nrevsslksk
     1921 lrrgdmpfvm trrivrkgag ecsdeevdgk adagdakate
//
LOCUS       XP_053914089            1387 aa            linear   VRT 09-MAR-2023
DEFINITION  mitogen-activated protein kinase kinase kinase kinase 4 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053914089
VERSION     XP_053914089.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058114.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1387
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1387
                     /product="mitogen-activated protein kinase kinase kinase
                     kinase 4 isoform X1"
                     /calculated_mol_wt=158830
     Region          8..289
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(31..34,37,39,52,54,83,105..108,153,157..158,160,
                     170..171)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270806"
     Region          1069..1367
                     /region_name="CNH"
                     /note="Domain found in NIK1-like kinases, mouse citron and
                     yeast ROM1, ROM2; smart00036"
                     /db_xref="CDD:214481"
     CDS             1..1387
                     /gene="MAP4K4"
                     /coded_by="XM_054058114.1:36..4199"
                     /db_xref="GeneID:104056691"
ORIGIN      
        1 mandspaksl vdidlsslrd pagifelvev vgngtygqvy kgrhvktgql aaikvmdvte
       61 deeeeiklei nmlkkyshhr niatyygafi kksppghddq lwlvmefcga gsitdlvknt
      121 kgntlkedwi ayisreilrg lahlhahhvi hrdikgqnvl ltenaevklv dfgvsaqldr
      181 tvgrrntfig tpywmapevi acdenpdaty dyrsdlwscg itaiemaega pplcdmhpmr
      241 alfliprnpp prlkskkwsk kffsfiegcl vknymqrpst eqllkhpfir dqpnerqvri
      301 qlkdhidrtr kkrgekdete yeysgseeee eevpeqegep ssivnvpges tlrrdflrlq
      361 qenkerseal rrqqllqeqq lreqeeykrq llaerqkrie qqkeqrrrle eqqrrerear
      421 rqqereqrrr eqeekrrlee merrrkeeee rrraeeekrr vereqeyirr qleeeqrhle
      481 ilqqqllqeq amlleyrwre meehrqaerl qrqlqqeqay llslqhdhrr qqqqqqqqqq
      541 qqqqqqqqqq ernkqsyhtp epkshyepae rareveerfr ktnqgspeaq skqmgkvlep
      601 pvpsrsesfs ngnsepaqpa lqrpmepqvq wshlaslknn vspvsrshsf sdpspkfahh
      661 hlrsqdpypp srsevlnqss dsksevpdpt qkawarsdsd evpprvpvrt tsrspvlsrr
      721 dsplqgsgqq nnqagqrnst snieprllwe rveklvprpg sgsssgssns gsqpgshpgs
      781 qsgsgerfrm rsssksegsp sqrhesapkk peekkevfrp ikpadltala kelravedvr
      841 pphkvtdyss sseesgttde edddmeqega destsgpddv ravstlnlsn getesvktmi
      901 vhddvesepa ltpskegtli vrqstvdkkr ashhesngfa grihllpdll qqshssstss
      961 tssspsssqp tptmspqtpq dklttnetqs asntlqkhks sssftpfidp rllqispssg
     1021 ttvtsvvgfs seamrseair qdptrkgsvv nvnptntrpq sdtpeirkyk krfnseilca
     1081 alwgvnllvg tesglmlldr sgqgkvypli nrrrfqqmdv leglnvlvti sgkknklrvy
     1141 ylswlrnkil hndpevekkq gwttvgdleg cvhykvvkye rikflvialk ssvevyawap
     1201 kpyhkfmafk sfgelvhkpl lvdltveegq rlkviygsca gfhavdvdsg svydiylpth
     1261 iqssiqphai iilpntdgme llvcyedegv yvntygritk dvvlqwgemp tsvayirsnq
     1321 imgwgekaie irsvetghld gvfmhkraqr lkflcerndk vffasvrsgg ssqvyfmtlg
     1381 rtsllsw
//
LOCUS       XP_053914097            1386 aa            linear   VRT 09-MAR-2023
DEFINITION  mitogen-activated protein kinase kinase kinase kinase 4 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053914097
VERSION     XP_053914097.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058122.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1386
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1386
                     /product="mitogen-activated protein kinase kinase kinase
                     kinase 4 isoform X2"
                     /calculated_mol_wt=158731
     Region          8..289
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(31..34,37,39,52,54,83,105..108,153,157..158,160,
                     170..171)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270806"
     Region          1068..1366
                     /region_name="CNH"
                     /note="Domain found in NIK1-like kinases, mouse citron and
                     yeast ROM1, ROM2; smart00036"
                     /db_xref="CDD:214481"
     CDS             1..1386
                     /gene="MAP4K4"
                     /coded_by="XM_054058122.1:36..4196"
                     /db_xref="GeneID:104056691"
ORIGIN      
        1 mandspaksl vdidlsslrd pagifelvev vgngtygqvy kgrhvktgql aaikvmdvte
       61 deeeeiklei nmlkkyshhr niatyygafi kksppghddq lwlvmefcga gsitdlvknt
      121 kgntlkedwi ayisreilrg lahlhahhvi hrdikgqnvl ltenaevklv dfgvsaqldr
      181 tvgrrntfig tpywmapevi acdenpdaty dyrsdlwscg itaiemaega pplcdmhpmr
      241 alfliprnpp prlkskkwsk kffsfiegcl vknymqrpst eqllkhpfir dqpnerqvri
      301 qlkdhidrtr kkrgekdete yeysgseeee eevpeqegep ssivnvpges tlrrdflrlq
      361 qenkerseal rrqqllqeqq lreqeeykrq llaerqkrie qqkeqrrrle eqqrrerear
      421 rqqereqrrr eqeekrrlee merrrkeeee rrraeeekrr vereqeyirr qleeeqrhle
      481 ilqqqllqeq amlleyrwre meehrqaerl qrqlqqeqay llslqhdhrr qqqqqqqqqq
      541 qqqqqqqqqq ernkqsyhtp epkshyepae rareveerfr ktnqgspeaq skqmgkvlep
      601 pvpsrsesfs ngnsepaqpa lqrpmepqvq wshlaslknn vspvsrshsf sdpspkfahh
      661 hlrsqdpypp srsevlnqss dsksevpdpt qkawarsdsd evpprvpvrt tsrspvlsrr
      721 dsplqgsgqq nnqagqrnst snieprllwe rveklvprpg sgsssgssns gsqpgshpgs
      781 qsgsgerfrm rsssksegsp sqrhesapkk peekkevfrp ikpadltala kelravedvr
      841 pphkvtdyss sseesgttde edddmeqega destsgpddv ravstlnlsn getesvktmi
      901 vhddvesepa ltpskegtli vrqstvdkkr ashhesngfa grihllpdll qqshssstss
      961 tssspsssqp tptmspqtpq dklttnetqs asntlqkhks sssftpfidp rllqispssg
     1021 ttvtsvgfss eamrseairq dptrkgsvvn vnptntrpqs dtpeirkykk rfnseilcaa
     1081 lwgvnllvgt esglmlldrs gqgkvyplin rrrfqqmdvl eglnvlvtis gkknklrvyy
     1141 lswlrnkilh ndpevekkqg wttvgdlegc vhykvvkyer ikflvialks svevyawapk
     1201 pyhkfmafks fgelvhkpll vdltveegqr lkviygscag fhavdvdsgs vydiylpthi
     1261 qssiqphaii ilpntdgmel lvcyedegvy vntygritkd vvlqwgempt svayirsnqi
     1321 mgwgekaiei rsvetghldg vfmhkraqrl kflcerndkv ffasvrsggs sqvyfmtlgr
     1381 tsllsw
//
LOCUS       XP_053914105            1385 aa            linear   VRT 09-MAR-2023
DEFINITION  mitogen-activated protein kinase kinase kinase kinase 4 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053914105
VERSION     XP_053914105.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058130.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1385
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1385
                     /product="mitogen-activated protein kinase kinase kinase
                     kinase 4 isoform X3"
                     /calculated_mol_wt=158603
     Region          8..289
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(31..34,37,39,52,54,83,105..108,153,157..158,160,
                     170..171)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270806"
     Region          1067..1365
                     /region_name="CNH"
                     /note="Domain found in NIK1-like kinases, mouse citron and
                     yeast ROM1, ROM2; smart00036"
                     /db_xref="CDD:214481"
     CDS             1..1385
                     /gene="MAP4K4"
                     /coded_by="XM_054058130.1:36..4193"
                     /db_xref="GeneID:104056691"
ORIGIN      
        1 mandspaksl vdidlsslrd pagifelvev vgngtygqvy kgrhvktgql aaikvmdvte
       61 deeeeiklei nmlkkyshhr niatyygafi kksppghddq lwlvmefcga gsitdlvknt
      121 kgntlkedwi ayisreilrg lahlhahhvi hrdikgqnvl ltenaevklv dfgvsaqldr
      181 tvgrrntfig tpywmapevi acdenpdaty dyrsdlwscg itaiemaega pplcdmhpmr
      241 alfliprnpp prlkskkwsk kffsfiegcl vknymqrpst eqllkhpfir dqpnerqvri
      301 qlkdhidrtr kkrgekdete yeysgseeee eevpeqegep ssivnvpges tlrrdflrlq
      361 qenkerseal rrqqllqeqq lreqeeykrq llaerqkrie qqkeqrrrle eqqrrerear
      421 rqqereqrrr eqeekrrlee merrrkeeee rrraeeekrr vereqeyirr qleeeqrhle
      481 ilqqqllqeq amlleyrwre meehrqaerl qrqlqqeqay llslqhdhrr qqqqqqqqqq
      541 qqqqqqqqqq ernkqsyhtp epkshyepae rareveerfr ktnqgspeaq skqmgkvlep
      601 pvpsrsesfs ngnsepaqpa lqrpmepqws hlaslknnvs pvsrshsfsd pspkfahhhl
      661 rsqdpyppsr sevlnqssds ksevpdptqk awarsdsdev pprvpvrtts rspvlsrrds
      721 plqgsgqqnn qagqrnstsn ieprllwerv eklvprpgsg sssgssnsgs qpgshpgsqs
      781 gsgerfrmrs ssksegspsq rhesapkkpe ekkevfrpik padltalake lravedvrpp
      841 hkvtdyssss eesgttdeed ddmeqegade stsgpddvra vstlnlsnge tesvktmivh
      901 ddvesepalt pskegtlivr qstvdkkras hhesngfagr ihllpdllqq shssstssts
      961 sspsssqptp tmspqtpqdk lttnetqsas ntlqkhksss sftpfidprl lqispssgtt
     1021 vtsvvgfsse amrseairqd ptrkgsvvnv nptntrpqsd tpeirkykkr fnseilcaal
     1081 wgvnllvgte sglmlldrsg qgkvyplinr rrfqqmdvle glnvlvtisg kknklrvyyl
     1141 swlrnkilhn dpevekkqgw ttvgdlegcv hykvvkyeri kflvialkss vevyawapkp
     1201 yhkfmafksf gelvhkpllv dltveegqrl kviygscagf havdvdsgsv ydiylpthiq
     1261 ssiqphaiii lpntdgmell vcyedegvyv ntygritkdv vlqwgempts vayirsnqim
     1321 gwgekaieir svetghldgv fmhkraqrlk flcerndkvf fasvrsggss qvyfmtlgrt
     1381 sllsw
//
LOCUS       XP_053914111            1358 aa            linear   VRT 09-MAR-2023
DEFINITION  mitogen-activated protein kinase kinase kinase kinase 4 isoform X4
            [Cuculus canorus].
ACCESSION   XP_053914111
VERSION     XP_053914111.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058136.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1358
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1358
                     /product="mitogen-activated protein kinase kinase kinase
                     kinase 4 isoform X4"
                     /calculated_mol_wt=155169
     Region          8..289
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(31..34,37,39,52,54,83,105..108,153,157..158,160,
                     170..171)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270806"
     Region          1040..1338
                     /region_name="CNH"
                     /note="Domain found in NIK1-like kinases, mouse citron and
                     yeast ROM1, ROM2; smart00036"
                     /db_xref="CDD:214481"
     CDS             1..1358
                     /gene="MAP4K4"
                     /coded_by="XM_054058136.1:36..4112"
                     /db_xref="GeneID:104056691"
ORIGIN      
        1 mandspaksl vdidlsslrd pagifelvev vgngtygqvy kgrhvktgql aaikvmdvte
       61 deeeeiklei nmlkkyshhr niatyygafi kksppghddq lwlvmefcga gsitdlvknt
      121 kgntlkedwi ayisreilrg lahlhahhvi hrdikgqnvl ltenaevklv dfgvsaqldr
      181 tvgrrntfig tpywmapevi acdenpdaty dyrsdlwscg itaiemaega pplcdmhpmr
      241 alfliprnpp prlkskkwsk kffsfiegcl vknymqrpst eqllkhpfir dqpnerqvri
      301 qlkdhidrtr kkrgekdete yeysgseeee eevpeqegep ssivnvpges tlrrdflrlq
      361 qenkerseal rrqqllqeqq lreqeeykrq llaerqkrie qqkeqrrrle eqqrrerear
      421 rqqereqrrr eqeekrrlee merrrkeeee rrraeeekrr vereqeyrwr emeehrqaer
      481 lqrqlqqeqa yllslqhdhr rqqqqqqqqq qqqqqqqqqq qernkqsyht pepkshyepa
      541 erareveerf rktnqgspea qskqmgkvle ppvpsrsesf sngnsepaqp alqrpmepqv
      601 qwshlaslkn nvspvsrshs fsdpspkfah hhlrsqdpyp psrsevlnqs sdsksevpdp
      661 tqkawarsds devpprvpvr ttsrspvlsr rdsplqgsgq qnnqagqrns tsnieprllw
      721 erveklvprp gsgsssgssn sgsqpgshpg sqsgsgerfr mrsssksegs psqrhesapk
      781 kpeekkevfr pikpadltal akelravedv rpphkvtdys ssseesgttd eedddmeqeg
      841 adestsgpdd vravstlnls ngetesvktm ivhddvesep altpskegtl ivrqstvdkk
      901 rashhesngf agrihllpdl lqqshsssts stssspsssq ptptmspqtp qdklttnetq
      961 sasntlqkhk ssssftpfid prllqispss gttvtsvvgf sseamrseai rqdptrkgsv
     1021 vnvnptntrp qsdtpeirky kkrfnseilc aalwgvnllv gtesglmlld rsgqgkvypl
     1081 inrrrfqqmd vleglnvlvt isgkknklrv yylswlrnki lhndpevekk qgwttvgdle
     1141 gcvhykvvky erikflvial kssvevyawa pkpyhkfmaf ksfgelvhkp llvdltveeg
     1201 qrlkviygsc agfhavdvds gsvydiylpt hiqssiqpha iiilpntdgm ellvcyedeg
     1261 vyvntygrit kdvvlqwgem ptsvayirsn qimgwgekai eirsvetghl dgvfmhkraq
     1321 rlkflcernd kvffasvrsg gssqvyfmtl grtsllsw
//
LOCUS       XP_053914119            1350 aa            linear   VRT 09-MAR-2023
DEFINITION  mitogen-activated protein kinase kinase kinase kinase 4 isoform X5
            [Cuculus canorus].
ACCESSION   XP_053914119
VERSION     XP_053914119.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058144.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1350
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1350
                     /product="mitogen-activated protein kinase kinase kinase
                     kinase 4 isoform X5"
                     /calculated_mol_wt=154642
     Region          8..289
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(31..34,37,39,52,54,83,105..108,153,157..158,160,
                     170..171)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270806"
     Region          1032..1330
                     /region_name="CNH"
                     /note="Domain found in NIK1-like kinases, mouse citron and
                     yeast ROM1, ROM2; smart00036"
                     /db_xref="CDD:214481"
     CDS             1..1350
                     /gene="MAP4K4"
                     /coded_by="XM_054058144.1:36..4088"
                     /db_xref="GeneID:104056691"
ORIGIN      
        1 mandspaksl vdidlsslrd pagifelvev vgngtygqvy kgrhvktgql aaikvmdvte
       61 deeeeiklei nmlkkyshhr niatyygafi kksppghddq lwlvmefcga gsitdlvknt
      121 kgntlkedwi ayisreilrg lahlhahhvi hrdikgqnvl ltenaevklv dfgvsaqldr
      181 tvgrrntfig tpywmapevi acdenpdaty dyrsdlwscg itaiemaega pplcdmhpmr
      241 alfliprnpp prlkskkwsk kffsfiegcl vknymqrpst eqllkhpfir dqpnerqvri
      301 qlkdhidrtr kkrgekdete yeysgseeee eevpeqegep ssivnvpges tlrrdflrlq
      361 qenkerseal rrqqllqeqq lreqeeykrq llaerqkrie qqkeqrrrle eqqrrerear
      421 rqqereqrrr eqeekrrlee merrrkeeee rrraeeekrr vereqeyirr qleeeqrhle
      481 ilqqqllqeq amlleyrwre meehrqaerl qrqlqqeqay llslqhdhrr qqqqqqqqqq
      541 qqqqqqqqqq ernkqsyhtp epkshyepae rareveerfr ktnqgspeaq skqmgkvlep
      601 pvpsrsesfs ngnsepaqpa lqrpmepqdp yppsrsevln qssdsksevp dptqkawars
      661 dsdevpprvp vrttsrspvl srrdsplqgs gqqnnqagqr nstsnieprl lwerveklvp
      721 rpgsgsssgs snsgsqpgsh pgsqsgsger frmrssskse gspsqrhesa pkkpeekkev
      781 frpikpadlt alakelrave dvrpphkvtd ysssseesgt tdeedddmeq egadestsgp
      841 ddvravstln lsngetesvk tmivhddves epaltpskeg tlivrqstvd kkrashhesn
      901 gfagrihllp dllqqshsss tsstssspss sqptptmspq tpqdklttne tqsasntlqk
      961 hkssssftpf idprllqisp ssgttvtsvv gfsseamrse airqdptrkg svvnvnptnt
     1021 rpqsdtpeir kykkrfnsei lcaalwgvnl lvgtesglml ldrsgqgkvy plinrrrfqq
     1081 mdvleglnvl vtisgkknkl rvyylswlrn kilhndpeve kkqgwttvgd legcvhykvv
     1141 kyerikflvi alkssvevya wapkpyhkfm afksfgelvh kpllvdltve egqrlkviyg
     1201 scagfhavdv dsgsvydiyl pthiqssiqp haiiilpntd gmellvcyed egvyvntygr
     1261 itkdvvlqwg emptsvayir snqimgwgek aieirsvetg hldgvfmhkr aqrlkflcer
     1321 ndkvffasvr sggssqvyfm tlgrtsllsw
//
LOCUS       XP_053914129            1323 aa            linear   VRT 09-MAR-2023
DEFINITION  mitogen-activated protein kinase kinase kinase kinase 4 isoform X6
            [Cuculus canorus].
ACCESSION   XP_053914129
VERSION     XP_053914129.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058154.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1323
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1323
                     /product="mitogen-activated protein kinase kinase kinase
                     kinase 4 isoform X6"
                     /calculated_mol_wt=152015
     Region          8..289
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(31..34,37,39,52,54,83,105..108,153,157..158,160,
                     170..171)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270806"
     Region          1005..1303
                     /region_name="CNH"
                     /note="Domain found in NIK1-like kinases, mouse citron and
                     yeast ROM1, ROM2; smart00036"
                     /db_xref="CDD:214481"
     CDS             1..1323
                     /gene="MAP4K4"
                     /coded_by="XM_054058154.1:36..4007"
                     /db_xref="GeneID:104056691"
ORIGIN      
        1 mandspaksl vdidlsslrd pagifelvev vgngtygqvy kgrhvktgql aaikvmdvte
       61 deeeeiklei nmlkkyshhr niatyygafi kksppghddq lwlvmefcga gsitdlvknt
      121 kgntlkedwi ayisreilrg lahlhahhvi hrdikgqnvl ltenaevklv dfgvsaqldr
      181 tvgrrntfig tpywmapevi acdenpdaty dyrsdlwscg itaiemaega pplcdmhpmr
      241 alfliprnpp prlkskkwsk kffsfiegcl vknymqrpst eqllkhpfir dqpnerqvri
      301 qlkdhidrtr kkrgekdete yeysgseeee eevpeqegep ssivnvpges tlrrdflrlq
      361 qenkerseal rrqqllqeqq lreqeeykrq llaerqkrie qqkeqrrrle eqqrrerear
      421 rqqereqrrr eqeekrrlee merrrkeeee rrraeeekrr vereqeyirr qleeeqrhle
      481 ilqqqllqeq amlleyrwre meehrqaerl qrqlqqeqay llslqhdhrr qqqqqqqqqq
      541 qqqqqqqqqq ernkqsyhtp epkshyepae rareveerfr ktnqgspeaq skqmgkvlep
      601 pvpsrsesfs ngnsepaqpa lqrpmepqvq wshlaslknn vspvsrshsf sdpspkfahh
      661 hlrsqdpypp srsevlnqss dsksevpdpt qkawarsdsd evpprvpvrt tsrspvlsrr
      721 dsplqgsgqq nnqagqrnst snieprllwe rveklvprpg sgsssgssns gsqpgshpgs
      781 qsgsgerfrm rsssksegsp sqrhesapkk peekkevfrp ikpadltala kelravedvr
      841 pphkvtdyss sseesgttde edddmeqega destsgpddv ravstlnlsn getesvktmi
      901 vhddvesepa ltpskegtli vrqtqsasnt lqkhkssssf tpfidprllq ispssgttvt
      961 svvgfsseam rseairqdpt rkgsvvnvnp tntrpqsdtp eirkykkrfn seilcaalwg
     1021 vnllvgtesg lmlldrsgqg kvyplinrrr fqqmdvlegl nvlvtisgkk nklrvyylsw
     1081 lrnkilhndp evekkqgwtt vgdlegcvhy kvvkyerikf lvialkssve vyawapkpyh
     1141 kfmafksfge lvhkpllvdl tveegqrlkv iygscagfha vdvdsgsvyd iylpthiqss
     1201 iqphaiiilp ntdgmellvc yedegvyvnt ygritkdvvl qwgemptsva yirsnqimgw
     1261 gekaieirsv etghldgvfm hkraqrlkfl cerndkvffa svrsggssqv yfmtlgrtsl
     1321 lsw
//
LOCUS       XP_053914137            1322 aa            linear   VRT 09-MAR-2023
DEFINITION  mitogen-activated protein kinase kinase kinase kinase 4 isoform X7
            [Cuculus canorus].
ACCESSION   XP_053914137
VERSION     XP_053914137.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058162.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1322
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1322
                     /product="mitogen-activated protein kinase kinase kinase
                     kinase 4 isoform X7"
                     /calculated_mol_wt=151916
     Region          8..289
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(31..34,37,39,52,54,83,105..108,153,157..158,160,
                     170..171)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270806"
     Region          1004..1302
                     /region_name="CNH"
                     /note="Domain found in NIK1-like kinases, mouse citron and
                     yeast ROM1, ROM2; smart00036"
                     /db_xref="CDD:214481"
     CDS             1..1322
                     /gene="MAP4K4"
                     /coded_by="XM_054058162.1:36..4004"
                     /db_xref="GeneID:104056691"
ORIGIN      
        1 mandspaksl vdidlsslrd pagifelvev vgngtygqvy kgrhvktgql aaikvmdvte
       61 deeeeiklei nmlkkyshhr niatyygafi kksppghddq lwlvmefcga gsitdlvknt
      121 kgntlkedwi ayisreilrg lahlhahhvi hrdikgqnvl ltenaevklv dfgvsaqldr
      181 tvgrrntfig tpywmapevi acdenpdaty dyrsdlwscg itaiemaega pplcdmhpmr
      241 alfliprnpp prlkskkwsk kffsfiegcl vknymqrpst eqllkhpfir dqpnerqvri
      301 qlkdhidrtr kkrgekdete yeysgseeee eevpeqegep ssivnvpges tlrrdflrlq
      361 qenkerseal rrqqllqeqq lreqeeykrq llaerqkrie qqkeqrrrle eqqrrerear
      421 rqqereqrrr eqeekrrlee merrrkeeee rrraeeekrr vereqeyirr qleeeqrhle
      481 ilqqqllqeq amlleyrwre meehrqaerl qrqlqqeqay llslqhdhrr qqqqqqqqqq
      541 qqqqqqqqqq ernkqsyhtp epkshyepae rareveerfr ktnqgspeaq skqmgkvlep
      601 pvpsrsesfs ngnsepaqpa lqrpmepqvq wshlaslknn vspvsrshsf sdpspkfahh
      661 hlrsqdpypp srsevlnqss dsksevpdpt qkawarsdsd evpprvpvrt tsrspvlsrr
      721 dsplqgsgqq nnqagqrnst snieprllwe rveklvprpg sgsssgssns gsqpgshpgs
      781 qsgsgerfrm rsssksegsp sqrhesapkk peekkevfrp ikpadltala kelravedvr
      841 pphkvtdyss sseesgttde edddmeqega destsgpddv ravstlnlsn getesvktmi
      901 vhddvesepa ltpskegtli vrqtqsasnt lqkhkssssf tpfidprllq ispssgttvt
      961 svgfsseamr seairqdptr kgsvvnvnpt ntrpqsdtpe irkykkrfns eilcaalwgv
     1021 nllvgtesgl mlldrsgqgk vyplinrrrf qqmdvlegln vlvtisgkkn klrvyylswl
     1081 rnkilhndpe vekkqgwttv gdlegcvhyk vvkyerikfl vialkssvev yawapkpyhk
     1141 fmafksfgel vhkpllvdlt veegqrlkvi ygscagfhav dvdsgsvydi ylpthiqssi
     1201 qphaiiilpn tdgmellvcy edegvyvnty gritkdvvlq wgemptsvay irsnqimgwg
     1261 ekaieirsve tghldgvfmh kraqrlkflc erndkvffas vrsggssqvy fmtlgrtsll
     1321 sw
//
LOCUS       XP_053914147            1310 aa            linear   VRT 09-MAR-2023
DEFINITION  mitogen-activated protein kinase kinase kinase kinase 4 isoform X8
            [Cuculus canorus].
ACCESSION   XP_053914147
VERSION     XP_053914147.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058172.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1310
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1310
                     /product="mitogen-activated protein kinase kinase kinase
                     kinase 4 isoform X8"
                     /calculated_mol_wt=150204
     Region          8..289
                     /region_name="STKc_MAP4K4_6_N"
                     /note="N-terminal Catalytic domain of the Serine/Threonine
                     Kinases, Mitogen-Activated Protein Kinase Kinase Kinase
                     Kinase 4 and 6; cd06636"
                     /db_xref="CDD:270806"
     Site            order(31..35,39,52,54,83,105..108,111..112,115,153,
                     155..158,160,170..171,174,188..191,193,225,234)
                     /site_type="active"
                     /db_xref="CDD:270806"
     Site            order(31..35,39,52,54,83,105..108,111..112,115,157..158,
                     160,171)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270806"
     Site            order(34..35,153,155..157,174,188..191,193,225,234)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270806"
     Site            170..193
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270806"
     Region          992..1290
                     /region_name="CNH"
                     /note="Domain found in NIK1-like kinases, mouse citron and
                     yeast ROM1, ROM2; smart00036"
                     /db_xref="CDD:214481"
     CDS             1..1310
                     /gene="MAP4K4"
                     /coded_by="XM_054058172.1:36..3968"
                     /db_xref="GeneID:104056691"
ORIGIN      
        1 mandspaksl vdidlsslrd pagifelvev vgngtygqvy kgrhvktgql aaikvmdvte
       61 deeeeiklei nmlkkyshhr niatyygafi kksppghddq lwlvmefcga gsitdlvknt
      121 kgntlkedwi ayisreilrg lahlhahhvi hrdikgqnvl ltenaevklv dfgvsaqldr
      181 tvgrrntfig tpywmapevi acdenpdaty dyrsdlwscg itaiemaega pplcdmhpmr
      241 alfliprnpp prlkskkwsk kffsfiegcl vknymqrpst eqllkhpfir dqpnerqvri
      301 qlkdhidrtr kkrgekdete yeysgseeee eevpeqegep ssivnvpges tlrrdflrlq
      361 qenkerseal rrqqllqeqq lreqeeykrq llaerqkrie qqkeqrrrle eqqrrerear
      421 rqqereqrrr eqeekrrlee merrrkeeee rrraeeekrr vereqeyirr qleeeqrhle
      481 ilqqqllqeq amlleyrwre meehrqaerl qrqlqqeqay llslqhdhrr qqqqqqqqqq
      541 qqqqqqqqqq ernkqsyhtp epkshyepae rareveerfr ktnqgspeaq skqmgkvlep
      601 pvpsrsesfs ngnsepaqpa lqrpmepqvp vrttsrspvl srrdsplqgs gqqnnqagqr
      661 nstsnieprl lwerveklvp rpgsgsssgs snsgsqpgsh pgsqsgsger frmrssskse
      721 gspsqrhesa pkkpeekkev frpikpadlt alakelrave dvrpphkvtd ysssseesgt
      781 tdeedddmeq egadestsgp ddvravstln lsngetesvk tmivhddves epaltpskeg
      841 tlivrqstvd kkrashhesn gfagrihllp dllqqshsss tsstssspss sqptptmspq
      901 tpqdklttne tqsasntlqk hkssssftpf idprllqisp ssgttvtsvv gfsseamrse
      961 airqdptrkg svvnvnptnt rpqsdtpeir kykkrfnsei lcaalwgvnl lvgtesglml
     1021 ldrsgqgkvy plinrrrfqq mdvleglnvl vtisgkknkl rvyylswlrn kilhndpeve
     1081 kkqgwttvgd legcvhykvv kyerikflvi alkssvevya wapkpyhkfm afksfgelvh
     1141 kpllvdltve egqrlkviyg scagfhavdv dsgsvydiyl pthiqssiqp haiiilpntd
     1201 gmellvcyed egvyvntygr itkdvvlqwg emptsvayir snqimgwgek aieirsvetg
     1261 hldgvfmhkr aqrlkflcer ndkvffasvr sggssqvyfm tlgrtsllsw
//
LOCUS       XP_053914156            1246 aa            linear   VRT 09-MAR-2023
DEFINITION  mitogen-activated protein kinase kinase kinase kinase 4 isoform X9
            [Cuculus canorus].
ACCESSION   XP_053914156
VERSION     XP_053914156.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058181.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1246
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1246
                     /product="mitogen-activated protein kinase kinase kinase
                     kinase 4 isoform X9"
                     /calculated_mol_wt=143389
     Region          8..289
                     /region_name="STKc_MAP4K4_6_N"
                     /note="N-terminal Catalytic domain of the Serine/Threonine
                     Kinases, Mitogen-Activated Protein Kinase Kinase Kinase
                     Kinase 4 and 6; cd06636"
                     /db_xref="CDD:270806"
     Site            order(31..35,39,52,54,83,105..108,111..112,115,153,
                     155..158,160,170..171,174,188..191,193,225,234)
                     /site_type="active"
                     /db_xref="CDD:270806"
     Site            order(31..35,39,52,54,83,105..108,111..112,115,157..158,
                     160,171)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270806"
     Site            order(34..35,153,155..157,174,188..191,193,225,234)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270806"
     Site            170..193
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270806"
     Region          928..1226
                     /region_name="CNH"
                     /note="Domain found in NIK1-like kinases, mouse citron and
                     yeast ROM1, ROM2; smart00036"
                     /db_xref="CDD:214481"
     CDS             1..1246
                     /gene="MAP4K4"
                     /coded_by="XM_054058181.1:36..3776"
                     /db_xref="GeneID:104056691"
ORIGIN      
        1 mandspaksl vdidlsslrd pagifelvev vgngtygqvy kgrhvktgql aaikvmdvte
       61 deeeeiklei nmlkkyshhr niatyygafi kksppghddq lwlvmefcga gsitdlvknt
      121 kgntlkedwi ayisreilrg lahlhahhvi hrdikgqnvl ltenaevklv dfgvsaqldr
      181 tvgrrntfig tpywmapevi acdenpdaty dyrsdlwscg itaiemaega pplcdmhpmr
      241 alfliprnpp prlkskkwsk kffsfiegcl vknymqrpst eqllkhpfir dqpnerqvri
      301 qlkdhidrtr kkrgekdete yeysgseeee eevpeqegep ssivnvpges tlrrdflrlq
      361 qenkerseal rrqqllqeqq lreqeeykrq llaerqkrie qqkeqrrrle eqqrrerear
      421 rqqereqrrr eqeekrrlee merrrkeeee rrraeeekrr vereqeyirr qleeeqrhle
      481 ilqqqllqeq amlleyrwre meehrqaerl qrqlqqeqay llslqhdhrr qqqqqqqqqq
      541 qqqqqqqqqq ernkqsyhtp epkshyepae rareveerfr ktnqgspeaq skqmgkvlep
      601 pvpsrsesfs ngnsepaqpa lqrpmepqvp vrttsrspvl srrdsplqgs gqqnnqagqr
      661 nstsnieprl lwerveklvp rpgsgsssgs snsgsqpgsh pgsqsgsger frmrssskse
      721 gspsqrhesa pkkpeekkev frpikpadlt alakelrave dvrpphkvtd ysssseesgt
      781 tdeedddmeq egadestsgp ddvravstln lsngetesvk tmivhddves epaltpskeg
      841 tlivrqtqsa sntlqkhkss ssftpfidpr llqispssgt tvtsvvgfss eamrseairq
      901 dptrkgsvvn vnptntrpqs dtpeirkykk rfnseilcaa lwgvnllvgt esglmlldrs
      961 gqgkvyplin rrrfqqmdvl eglnvlvtis gkknklrvyy lswlrnkilh ndpevekkqg
     1021 wttvgdlegc vhykvvkyer ikflvialks svevyawapk pyhkfmafks fgelvhkpll
     1081 vdltveegqr lkviygscag fhavdvdsgs vydiylpthi qssiqphaii ilpntdgmel
     1141 lvcyedegvy vntygritkd vvlqwgempt svayirsnqi mgwgekaiei rsvetghldg
     1201 vfmhkraqrl kflcerndkv ffasvrsggs sqvyfmtlgr tsllsw
//
LOCUS       XP_053914164            1294 aa            linear   VRT 09-MAR-2023
DEFINITION  mitogen-activated protein kinase kinase kinase kinase 4 isoform X10
            [Cuculus canorus].
ACCESSION   XP_053914164
VERSION     XP_053914164.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058189.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1294
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1294
                     /product="mitogen-activated protein kinase kinase kinase
                     kinase 4 isoform X10"
                     /calculated_mol_wt=148354
     Region          8..289
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(31..34,37,39,52,54,83,105..108,153,157..158,160,
                     170..171)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270806"
     Region          976..1274
                     /region_name="CNH"
                     /note="Domain found in NIK1-like kinases, mouse citron and
                     yeast ROM1, ROM2; smart00036"
                     /db_xref="CDD:214481"
     CDS             1..1294
                     /gene="MAP4K4"
                     /coded_by="XM_054058189.1:36..3920"
                     /db_xref="GeneID:104056691"
ORIGIN      
        1 mandspaksl vdidlsslrd pagifelvev vgngtygqvy kgrhvktgql aaikvmdvte
       61 deeeeiklei nmlkkyshhr niatyygafi kksppghddq lwlvmefcga gsitdlvknt
      121 kgntlkedwi ayisreilrg lahlhahhvi hrdikgqnvl ltenaevklv dfgvsaqldr
      181 tvgrrntfig tpywmapevi acdenpdaty dyrsdlwscg itaiemaega pplcdmhpmr
      241 alfliprnpp prlkskkwsk kffsfiegcl vknymqrpst eqllkhpfir dqpnerqvri
      301 qlkdhidrtr kkrgekdete yeysgseeee eevpeqegep ssivnvpges tlrrdflrlq
      361 qenkerseal rrqqllqeqq lreqeeykrq llaerqkrie qqkeqrrrle eqqrrerear
      421 rqqereqrrr eqeekrrlee merrrkeeee rrraeeekrr vereqeyrwr emeehrqaer
      481 lqrqlqqeqa yllslqhdhr rqqqqqqqqq qqqqqqqqqq qernkqsyht pepkshyepa
      541 erareveerf rktnqgspea qskqmgkvle ppvpsrsesf sngnsepaqp alqrpmepqv
      601 qwshlaslkn nvspvsrshs fsdpspkfah hhlrsqdpyp psrsevlnqs sdsksevpdp
      661 tqkawarsds devpprvpvr ttsrspvlsr rdsplqgsgq qnnqagqrns tsnieprllw
      721 erveklvprp gsgsssgssn sgsqpgshpg sqsgsgerfr mrsssksegs psqrhesapk
      781 kpeekkevfr pikpadltal akelravedv rpphkvtdys ssseesgttd eedddmeqeg
      841 adestsgpdd vravstlnls ngetesvktm ivhddvesep altpskegtl ivrqtqsasn
      901 tlqkhkssss ftpfidprll qispssgttv tsvvgfssea mrseairqdp trkgsvvnvn
      961 ptntrpqsdt peirkykkrf nseilcaalw gvnllvgtes glmlldrsgq gkvyplinrr
     1021 rfqqmdvleg lnvlvtisgk knklrvyyls wlrnkilhnd pevekkqgwt tvgdlegcvh
     1081 ykvvkyerik flvialkssv evyawapkpy hkfmafksfg elvhkpllvd ltveegqrlk
     1141 viygscagfh avdvdsgsvy diylpthiqs siqphaiiil pntdgmellv cyedegvyvn
     1201 tygritkdvv lqwgemptsv ayirsnqimg wgekaieirs vetghldgvf mhkraqrlkf
     1261 lcerndkvff asvrsggssq vyfmtlgrts llsw
//
LOCUS       XP_009556072             865 aa            linear   VRT 09-MAR-2023
DEFINITION  N-alpha-acetyltransferase 16, NatA auxiliary subunit isoform X1
            [Cuculus canorus].
ACCESSION   XP_009556072
VERSION     XP_009556072.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557777.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556072.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..865
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..865
                     /product="N-alpha-acetyltransferase 16, NatA auxiliary
                     subunit isoform X1"
                     /calculated_mol_wt=101207
     Region          13..38
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          21..249
                     /region_name="TPR"
                     /note="Tetratricopeptide (TPR) repeat [General function
                     prediction only]; COG0457"
                     /db_xref="CDD:440225"
     Region          47..74
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          82..108
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(84..85,88..89,91,115,118..119,122..123,125..126,149,
                     152..153,156..157,160)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          113..143
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          148..173
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          187..698
                     /region_name="NatA_aux_su"
                     /note="N-terminal acetyltransferase A, auxiliary subunit;
                     pfam12569"
                     /db_xref="CDD:463630"
     Region          376..402
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(378..379,382..383,385,409,412..413,416..417,
                     419..420,443,446..447,450..451,454)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          407..437
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          442..467
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..865
                     /gene="NAA16"
                     /coded_by="XM_009557777.2:202..2799"
                     /db_xref="GeneID:104056518"
ORIGIN      
        1 mpsvplppke snlfkrilkc yeqkqykngl kfckmilsnp kfaehgetla mkgltlnclg
       61 kkeeayefvr kglrndvksh vcwhvygllq rsdkkydeai kcyrnalkld kdnlqilrdl
      121 sllqiqmrdl egyretryql lqlrptqras wigyaiayhl lkdydmalkl leefrktqqv
      181 ppnkidyeys elilyqnqvm readlfqesl ehietyekqi cdkliveeir gemllklgrl
      241 keagevykel iernaenwyy yeglekavqp stleerlqiy eevskrhpra vsprrlplnf
      301 vsgekfrelm dkflrvnfsk gcpplfttlk slyynpekvs tiqelvtdye tslktcdlfs
      361 tsengekepp ttllwvryfl aqhfdklgqc slaldyinaa iastptliel fylkakiykh
      421 vgnlkeaakw mdeaqsldta drfinskcak ymlranmvkd aeemcskftr egtsamenln
      481 emqcmwfqte caaayqrlgk ygdalkkche verhffeitd dqfdfhtycm rkmtlrayvd
      541 llrledvlrk hafyfkaara aieiylklhd nplaneskeq evnsenlsak elkkmlskqr
      601 raqkkaklee erkhaererq qknqkkkrde eeeetsgpke elvpeklerv enpleeaikf
      661 liplknligd diethllafe iyfrkgkfll mlqsvkrafa insnnpwlhe clikfskavs
      721 dhsnlpeivs kvltqemqki fvnknlesfn eeflkhnsts iqhqlsgakm myfldksrqe
      781 kaiavatrld knmrdrnvkt ltkvfealld gsfgschtqc eeyqaachkl fpftsafmpa
      841 tneddsnias vnhtainhdl lsnei
//
LOCUS       XP_053914183             848 aa            linear   VRT 09-MAR-2023
DEFINITION  N-alpha-acetyltransferase 16, NatA auxiliary subunit isoform X2
            [Cuculus canorus].
ACCESSION   XP_053914183
VERSION     XP_053914183.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058208.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..848
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..848
                     /product="N-alpha-acetyltransferase 16, NatA auxiliary
                     subunit isoform X2"
                     /calculated_mol_wt=99424
     Region          27..265
                     /region_name="TPR"
                     /note="Tetratricopeptide (TPR) repeat [General function
                     prediction only]; COG0457"
                     /db_xref="CDD:440225"
     Region          29..57
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          65..91
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(67..68,71..72,74,98,101..102,105..106,108..109,132,
                     135..136,139..140,143)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          96..126
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          131..156
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          170..681
                     /region_name="NatA_aux_su"
                     /note="N-terminal acetyltransferase A, auxiliary subunit;
                     pfam12569"
                     /db_xref="CDD:463630"
     Region          359..385
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(361..362,365..366,368,392,395..396,399..400,
                     402..403,426,429..430,433..434,437)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          390..420
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          425..450
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..848
                     /gene="NAA16"
                     /coded_by="XM_054058208.1:24..2570"
                     /db_xref="GeneID:104056518"
ORIGIN      
        1 mrfpssntpv wwddedqniw wkhtsvklpk tlamkgltln clgkkeeaye fvrkglrndv
       61 kshvcwhvyg llqrsdkkyd eaikcyrnal kldkdnlqil rdlsllqiqm rdlegyretr
      121 yqllqlrptq raswigyaia yhllkdydma lklleefrkt qqvppnkidy eyselilyqn
      181 qvmreadlfq eslehietye kqicdklive eirgemllkl grlkeagevy keliernaen
      241 wyyyegleka vqpstleerl qiyeevskrh pravsprrlp lnfvsgekfr elmdkflrvn
      301 fskgcpplft tlkslyynpe kvstiqelvt dyetslktcd lfstsengek eppttllwvr
      361 yflaqhfdkl gqcslaldyi naaiastptl ielfylkaki ykhvgnlkea akwmdeaqsl
      421 dtadrfinsk cakymlranm vkdaeemcsk ftregtsame nlnemqcmwf qtecaaayqr
      481 lgkygdalkk cheverhffe itddqfdfht ycmrkmtlra yvdllrledv lrkhafyfka
      541 araaieiylk lhdnplanes keqevnsenl sakelkkmls kqrraqkkak leeerkhaer
      601 erqqknqkkk rdeeeeetsg pkeelvpekl ervenpleea ikfliplknl igddiethll
      661 afeiyfrkgk fllmlqsvkr afainsnnpw lheclikfsk avsdhsnlpe ivskvltqem
      721 qkifvnknle sfneeflkhn stsiqhqlsg akmmyfldks rqekaiavat rldknmrdrn
      781 vktltkvfea lldgsfgsch tqceeyqaac hklfpftsaf mpatneddsn iasvnhtain
      841 hdllsnei
//
LOCUS       XP_053914197             311 aa            linear   VRT 09-MAR-2023
DEFINITION  N-alpha-acetyltransferase 16, NatA auxiliary subunit isoform X3
            [Cuculus canorus].
ACCESSION   XP_053914197
VERSION     XP_053914197.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058222.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..311
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..311
                     /product="N-alpha-acetyltransferase 16, NatA auxiliary
                     subunit isoform X3"
                     /calculated_mol_wt=36915
     Region          13..38
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          21..249
                     /region_name="TPR"
                     /note="Tetratricopeptide (TPR) repeat [General function
                     prediction only]; COG0457"
                     /db_xref="CDD:440225"
     Region          47..74
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          82..108
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(84..85,88..89,91,115,118..119,122..123,125..126,149,
                     152..153,156..157,160)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          113..143
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          148..173
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          187..>303
                     /region_name="NatA_aux_su"
                     /note="N-terminal acetyltransferase A, auxiliary subunit;
                     pfam12569"
                     /db_xref="CDD:463630"
     CDS             1..311
                     /gene="NAA16"
                     /coded_by="XM_054058222.1:202..1137"
                     /db_xref="GeneID:104056518"
ORIGIN      
        1 mpsvplppke snlfkrilkc yeqkqykngl kfckmilsnp kfaehgetla mkgltlnclg
       61 kkeeayefvr kglrndvksh vcwhvygllq rsdkkydeai kcyrnalkld kdnlqilrdl
      121 sllqiqmrdl egyretryql lqlrptqras wigyaiayhl lkdydmalkl leefrktqqv
      181 ppnkidyeys elilyqnqvm readlfqesl ehietyekqi cdkliveeir gemllklgrl
      241 keagevykel iernaenwyy yeglekavqp stleerlqiy eevskrhpra vsprrlplnf
      301 vsgfynsrtc y
//
LOCUS       XP_053914209             455 aa            linear   VRT 09-MAR-2023
DEFINITION  peptide chain release factor 1, mitochondrial [Cuculus canorus].
ACCESSION   XP_053914209
VERSION     XP_053914209.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058234.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..455
                     /product="peptide chain release factor 1, mitochondrial"
                     /calculated_mol_wt=52134
     Region          86..429
                     /region_name="PrfA"
                     /note="Protein chain release factor RF1 [Translation,
                     ribosomal structure and biogenesis]; COG0216"
                     /db_xref="CDD:439986"
     CDS             1..455
                     /gene="MTRF1"
                     /coded_by="XM_054058234.1:319..1686"
                     /db_xref="GeneID:104056520"
ORIGIN      
        1 mkpfqgvclf ksllancych grlhscllpp fvkkigyvvg lhnggfwrpk sfldtggfal
       61 sfntqlrkkh qdsralwkre svqkyletls keyqqvsdrl nansitdfeq rtlrrrqadl
      121 spiaaafqei keaegevqel eamcrelesr dekqllelal eeketvdkri ntlcrklfql
      181 lvpkekydrs hvilevtagr ttggdicqqf tkemfemyqn yadykrwtfd ivnytpaeig
      241 glhhaaahis gddvyrhlky eggthrvqri petglssrmq rihtgtmsvi vlpqpeevdi
      301 kvdpkdlhid tfrakgaggq hvnktdsavr ivhlptglsv ecqqersqqi nkeialrtlr
      361 aklyqqviek qlsqeqsark lqlgtraqse rirtynftqd rvtdhripyd arnikeilsg
      421 kealdrline vlefaeieav teylenlqal egggc
//
LOCUS       XP_009556073             455 aa            linear   VRT 09-MAR-2023
DEFINITION  peptide chain release factor 1, mitochondrial [Cuculus canorus].
ACCESSION   XP_009556073
VERSION     XP_009556073.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557778.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556073.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..455
                     /product="peptide chain release factor 1, mitochondrial"
                     /calculated_mol_wt=52134
     Region          86..429
                     /region_name="PrfA"
                     /note="Protein chain release factor RF1 [Translation,
                     ribosomal structure and biogenesis]; COG0216"
                     /db_xref="CDD:439986"
     CDS             1..455
                     /gene="MTRF1"
                     /coded_by="XM_009557778.2:153..1520"
                     /db_xref="GeneID:104056520"
ORIGIN      
        1 mkpfqgvclf ksllancych grlhscllpp fvkkigyvvg lhnggfwrpk sfldtggfal
       61 sfntqlrkkh qdsralwkre svqkyletls keyqqvsdrl nansitdfeq rtlrrrqadl
      121 spiaaafqei keaegevqel eamcrelesr dekqllelal eeketvdkri ntlcrklfql
      181 lvpkekydrs hvilevtagr ttggdicqqf tkemfemyqn yadykrwtfd ivnytpaeig
      241 glhhaaahis gddvyrhlky eggthrvqri petglssrmq rihtgtmsvi vlpqpeevdi
      301 kvdpkdlhid tfrakgaggq hvnktdsavr ivhlptglsv ecqqersqqi nkeialrtlr
      361 aklyqqviek qlsqeqsark lqlgtraqse rirtynftqd rvtdhripyd arnikeilsg
      421 kealdrline vlefaeieav teylenlqal egggc
//
LOCUS       XP_053914224             455 aa            linear   VRT 09-MAR-2023
DEFINITION  peptide chain release factor 1, mitochondrial [Cuculus canorus].
ACCESSION   XP_053914224
VERSION     XP_053914224.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058249.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..455
                     /product="peptide chain release factor 1, mitochondrial"
                     /calculated_mol_wt=52134
     Region          86..429
                     /region_name="PrfA"
                     /note="Protein chain release factor RF1 [Translation,
                     ribosomal structure and biogenesis]; COG0216"
                     /db_xref="CDD:439986"
     CDS             1..455
                     /gene="MTRF1"
                     /coded_by="XM_054058249.1:45..1412"
                     /db_xref="GeneID:104056520"
ORIGIN      
        1 mkpfqgvclf ksllancych grlhscllpp fvkkigyvvg lhnggfwrpk sfldtggfal
       61 sfntqlrkkh qdsralwkre svqkyletls keyqqvsdrl nansitdfeq rtlrrrqadl
      121 spiaaafqei keaegevqel eamcrelesr dekqllelal eeketvdkri ntlcrklfql
      181 lvpkekydrs hvilevtagr ttggdicqqf tkemfemyqn yadykrwtfd ivnytpaeig
      241 glhhaaahis gddvyrhlky eggthrvqri petglssrmq rihtgtmsvi vlpqpeevdi
      301 kvdpkdlhid tfrakgaggq hvnktdsavr ivhlptglsv ecqqersqqi nkeialrtlr
      361 aklyqqviek qlsqeqsark lqlgtraqse rirtynftqd rvtdhripyd arnikeilsg
      421 kealdrline vlefaeieav teylenlqal egggc
//
LOCUS       XP_053914234            1893 aa            linear   VRT 09-MAR-2023
DEFINITION  von Willebrand factor A domain-containing protein 8 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053914234
VERSION     XP_053914234.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058259.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1893
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1893
                     /product="von Willebrand factor A domain-containing
                     protein 8 isoform X1"
                     /calculated_mol_wt=212700
     Region          87..243
                     /region_name="AAA_5"
                     /note="AAA domain (dynein-related subfamily); pfam07728"
                     /db_xref="CDD:400191"
     Region          424..585
                     /region_name="AAA_5"
                     /note="AAA domain (dynein-related subfamily); pfam07728"
                     /db_xref="CDD:400191"
     Site            429..436
                     /site_type="other"
                     /note="Walker A motif"
                     /db_xref="CDD:99707"
     Site            order(430..437,496)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:99707"
     Site            492..497
                     /site_type="other"
                     /note="Walker B motif"
                     /db_xref="CDD:99707"
     Region          758..905
                     /region_name="AAA_5"
                     /note="AAA domain (dynein-related subfamily); pfam07728"
                     /db_xref="CDD:400191"
     Region          1701..1890
                     /region_name="vWFA"
                     /note="Von Willebrand factor type A (vWA) domain was
                     originally found in the blood coagulation protein von
                     Willebrand factor (vWF). Typically, the vWA domain is made
                     up of approximately 200 amino acid residues folded into a
                     classic a/b para-rossmann type of...; cl00057"
                     /db_xref="CDD:469594"
     Site            order(1708,1791,1819)
                     /site_type="other"
                     /note="metal ion-dependent adhesion site (MIDAS)"
                     /db_xref="CDD:238732"
     CDS             1..1893
                     /gene="VWA8"
                     /coded_by="XM_054058259.1:50..5731"
                     /db_xref="GeneID:104056517"
ORIGIN      
        1 mqsralcgap grrvrlllrh vlrpglrpgp rarhgsgdtv tigdvsfklk tpknpelvpq
       61 nymtdslaqs vvhhlrwimq kdllgqdvfl igppgplrrs iamqyleltk reveyialsr
      121 dttetdlkqr reirsgsafy ldqcavraat egrilvlegl ekaernvlpv lnnllenrem
      181 qledgrflms aerydkllqd htkseldswk ivrvsedfrv ialglpvpky sgnpldpplr
      241 srfqardvyh lpfkdhlqll ysigsnfste risqllsfat tlcsqesstl glpdfpldsl
      301 stavqildsf pmmsvqhvid rlypynvflg kegrtavkda lkrfelqdsk srflprritk
      361 vesthgnkpf kadvtvqige kevtfqvpag tgllkerprs dnfirtsshn qllaemmqsh
      421 mvkdmcliga kgcgktviak qfadmlgysi epvmlyqdmt ardllqqryt lpngdtawrp
      481 splvtaaleg klvvldgihr inpgtlavlq rlihdreltl ydgtrllred ryqklkeelq
      541 isdeelqers ifpihpsfri vvlaeppvig sstqqwlgpe fltlflfhnv qslskseeiq
      601 vikemipnvp svaveqllsl thklretndt taqslassls trqllricrr lsqhpdesly
      661 yavnkaclsr flpnlarsal hktlqdsgie tsqddvnkle ekdytceikd gilrigsvmm
      721 pvynsaekmk vpdvlfyena qhmmvmedml kdfllgehll lvgnqgvgkn kivdrflhll
      781 nrpreylqlh rdttvqsltl qpsvkdglii yedsplvkav kfghilvide adkaptnvtc
      841 vlktlvesge mvlsdgrriv anhahvegre nvivihpdfr mivlanrpgf pflgndffgt
      901 lgdifschav dnpkpqsela mlrqygpdvp epilqklvaa fgelrsladq giinypystr
      961 evvnivkhlq kfpaeglanv vrnvfdfdsy nnemreilin tlhkhgipig akptnvqlak
     1021 elplpdhkfm gywkidqlgn agqkllcpte tkkidvkgpv ylniqefple rhearslsft
     1081 eelafwtlpl hdvnlvcdvm vtkeeeaenv lyvttcnpvs lyfmnvssks ghfvdlydlf
     1141 prtvgsvwqp fvtvaplgnp lkgqvvlhea esnvvllldt nngalrrlll lpdtqespkr
     1201 tswwgskeem snykmcrefs hknwlvfyke egnclivldv legqthtisl pinlksvflv
     1261 aedrwllven ktnrkflltk rahmeaedse vcqlyalsee ladmgfgltt gselsvphav
     1321 ssdqlssenl saavgqkiss pnrifsdehn yativigfpd llspsevysw krnsslsgkr
     1381 aspsdpfyyg sqrktgaakq tncvtllasn qivrilapgd vplkdiypkd vtppqasgyl
     1441 evtdlnskki kyiaiprsqs lspytswlsk isdadallap lgkvglvsvd mgggvrlwet
     1501 gldslmrslq dwrnmigqed grpvqitiqr dsgldvsspk hgkvdpanmp hvggntwagg
     1561 tggrdtaglg gkggpyrlda ghrvyqisqa ekdavpeevk raaremgeka fkqrlkeiqm
     1621 seydastyer fsgavrrqvq slriildnlq akgkerqwlr hqavgeldda kiidgltgek
     1681 aiykrrgele pqpgspqqkp krlrllvdvs gsmyrfngvd grlersmeav cmvmeafeny
     1741 ehkfkydivg hsgdgynial vgsdklpkdn kqrleilktm hahaqfcmsg dhtlegteha
     1801 ireitkeead eyfvivlsda nlerygiqps rfaqalttnt qvnafaifig slgdqadrlq
     1861 rmlpagrsfi amdtkeipqi lqqiftstml ssa
//
LOCUS       XP_053914244            1831 aa            linear   VRT 09-MAR-2023
DEFINITION  von Willebrand factor A domain-containing protein 8 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053914244
VERSION     XP_053914244.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058269.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1831
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1831
                     /product="von Willebrand factor A domain-containing
                     protein 8 isoform X2"
                     /calculated_mol_wt=205876
     Region          25..181
                     /region_name="AAA_5"
                     /note="AAA domain (dynein-related subfamily); pfam07728"
                     /db_xref="CDD:400191"
     Region          362..523
                     /region_name="AAA_5"
                     /note="AAA domain (dynein-related subfamily); pfam07728"
                     /db_xref="CDD:400191"
     Site            367..374
                     /site_type="other"
                     /note="Walker A motif"
                     /db_xref="CDD:99707"
     Site            order(368..375,434)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:99707"
     Site            430..435
                     /site_type="other"
                     /note="Walker B motif"
                     /db_xref="CDD:99707"
     Region          696..843
                     /region_name="AAA_5"
                     /note="AAA domain (dynein-related subfamily); pfam07728"
                     /db_xref="CDD:400191"
     Region          1639..1828
                     /region_name="vWFA"
                     /note="Von Willebrand factor type A (vWA) domain was
                     originally found in the blood coagulation protein von
                     Willebrand factor (vWF). Typically, the vWA domain is made
                     up of approximately 200 amino acid residues folded into a
                     classic a/b para-rossmann type of...; cl00057"
                     /db_xref="CDD:469594"
     Site            order(1646,1729,1757)
                     /site_type="other"
                     /note="metal ion-dependent adhesion site (MIDAS)"
                     /db_xref="CDD:238732"
     CDS             1..1831
                     /gene="VWA8"
                     /coded_by="XM_054058269.1:97..5592"
                     /db_xref="GeneID:104056517"
ORIGIN      
        1 mtdslaqsvv hhlrwimqkd llgqdvflig ppgplrrsia mqyleltkre veyialsrdt
       61 tetdlkqrre irsgsafyld qcavraateg rilvleglek aernvlpvln nllenremql
      121 edgrflmsae rydkllqdht kseldswkiv rvsedfrvia lglpvpkysg npldpplrsr
      181 fqardvyhlp fkdhlqllys igsnfsteri sqllsfattl csqesstlgl pdfpldslst
      241 avqildsfpm msvqhvidrl ypynvflgke grtavkdalk rfelqdsksr flprritkve
      301 sthgnkpfka dvtvqigeke vtfqvpagtg llkerprsdn firtsshnql laemmqshmv
      361 kdmcligakg cgktviakqf admlgysiep vmlyqdmtar dllqqrytlp ngdtawrpsp
      421 lvtaalegkl vvldgihrin pgtlavlqrl ihdreltlyd gtrllredry qklkeelqis
      481 deelqersif pihpsfrivv laeppvigss tqqwlgpefl tlflfhnvqs lskseeiqvi
      541 kemipnvpsv aveqllslth klretndtta qslasslstr qllricrrls qhpdeslyya
      601 vnkaclsrfl pnlarsalhk tlqdsgiets qddvnkleek dytceikdgi lrigsvmmpv
      661 ynsaekmkvp dvlfyenaqh mmvmedmlkd fllgehlllv gnqgvgknki vdrflhllnr
      721 preylqlhrd ttvqsltlqp svkdgliiye dsplvkavkf ghilvidead kaptnvtcvl
      781 ktlvesgemv lsdgrrivan hahvegrenv ivihpdfrmi vlanrpgfpf lgndffgtlg
      841 difschavdn pkpqselaml rqygpdvpep ilqklvaafg elrsladqgi inypystrev
      901 vnivkhlqkf paeglanvvr nvfdfdsynn emreilintl hkhgipigak ptnvqlakel
      961 plpdhkfmgy wkidqlgnag qkllcptetk kidvkgpvyl niqefplerh earslsftee
     1021 lafwtlplhd vnlvcdvmvt keeeaenvly vttcnpvsly fmnvssksgh fvdlydlfpr
     1081 tvgsvwqpfv tvaplgnplk gqvvlheaes nvvllldtnn galrrllllp dtqespkrts
     1141 wwgskeemsn ykmcrefshk nwlvfykeeg nclivldvle gqthtislpi nlksvflvae
     1201 drwllvenkt nrkflltkra hmeaedsevc qlyalseela dmgfglttgs elsvphavss
     1261 dqlssenlsa avgqkisspn rifsdehnya tivigfpdll spsevyswkr nsslsgkras
     1321 psdpfyygsq rktgaakqtn cvtllasnqi vrilapgdvp lkdiypkdvt ppqasgylev
     1381 tdlnskkiky iaiprsqsls pytswlskis dadallaplg kvglvsvdmg ggvrlwetgl
     1441 dslmrslqdw rnmigqedgr pvqitiqrds gldvsspkhg kvdpanmphv ggntwaggtg
     1501 grdtaglggk ggpyrldagh rvyqisqaek davpeevkra aremgekafk qrlkeiqmse
     1561 ydastyerfs gavrrqvqsl riildnlqak gkerqwlrhq avgelddaki idgltgekai
     1621 ykrrgelepq pgspqqkpkr lrllvdvsgs myrfngvdgr lersmeavcm vmeafenyeh
     1681 kfkydivghs gdgynialvg sdklpkdnkq rleilktmha haqfcmsgdh tlegtehair
     1741 eitkeeadey fvivlsdanl erygiqpsrf aqalttntqv nafaifigsl gdqadrlqrm
     1801 lpagrsfiam dtkeipqilq qiftstmlss a
//
LOCUS       XP_053914251            1815 aa            linear   VRT 09-MAR-2023
DEFINITION  von Willebrand factor A domain-containing protein 8 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053914251
VERSION     XP_053914251.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058276.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1815
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1815
                     /product="von Willebrand factor A domain-containing
                     protein 8 isoform X3"
                     /calculated_mol_wt=204001
     Region          9..165
                     /region_name="AAA_5"
                     /note="AAA domain (dynein-related subfamily); pfam07728"
                     /db_xref="CDD:400191"
     Region          346..507
                     /region_name="AAA_5"
                     /note="AAA domain (dynein-related subfamily); pfam07728"
                     /db_xref="CDD:400191"
     Site            351..358
                     /site_type="other"
                     /note="Walker A motif"
                     /db_xref="CDD:99707"
     Site            order(352..359,418)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:99707"
     Site            414..419
                     /site_type="other"
                     /note="Walker B motif"
                     /db_xref="CDD:99707"
     Region          680..827
                     /region_name="AAA_5"
                     /note="AAA domain (dynein-related subfamily); pfam07728"
                     /db_xref="CDD:400191"
     Region          1623..1812
                     /region_name="vWFA"
                     /note="Von Willebrand factor type A (vWA) domain was
                     originally found in the blood coagulation protein von
                     Willebrand factor (vWF). Typically, the vWA domain is made
                     up of approximately 200 amino acid residues folded into a
                     classic a/b para-rossmann type of...; cl00057"
                     /db_xref="CDD:469594"
     Site            order(1630,1713,1741)
                     /site_type="other"
                     /note="metal ion-dependent adhesion site (MIDAS)"
                     /db_xref="CDD:238732"
     CDS             1..1815
                     /gene="VWA8"
                     /coded_by="XM_054058276.1:195..5642"
                     /db_xref="GeneID:104056517"
ORIGIN      
        1 mqkdllgqdv fligppgplr rsiamqylel tkreveyial srdttetdlk qrreirsgsa
       61 fyldqcavra ategrilvle glekaernvl pvlnnllenr emqledgrfl msaerydkll
      121 qdhtkselds wkivrvsedf rvialglpvp kysgnpldpp lrsrfqardv yhlpfkdhlq
      181 llysigsnfs terisqllsf attlcsqess tlglpdfpld slstavqild sfpmmsvqhv
      241 idrlypynvf lgkegrtavk dalkrfelqd sksrflprri tkvesthgnk pfkadvtvqi
      301 gekevtfqvp agtgllkerp rsdnfirtss hnqllaemmq shmvkdmcli gakgcgktvi
      361 akqfadmlgy siepvmlyqd mtardllqqr ytlpngdtaw rpsplvtaal egklvvldgi
      421 hrinpgtlav lqrlihdrel tlydgtrllr edryqklkee lqisdeelqe rsifpihpsf
      481 rivvlaeppv igsstqqwlg pefltlflfh nvqslsksee iqvikemipn vpsvaveqll
      541 slthklretn dttaqslass lstrqllric rrlsqhpdes lyyavnkacl srflpnlars
      601 alhktlqdsg ietsqddvnk leekdytcei kdgilrigsv mmpvynsaek mkvpdvlfye
      661 naqhmmvmed mlkdfllgeh lllvgnqgvg knkivdrflh llnrpreylq lhrdttvqsl
      721 tlqpsvkdgl iiyedsplvk avkfghilvi deadkaptnv tcvlktlves gemvlsdgrr
      781 ivanhahveg renvivihpd frmivlanrp gfpflgndff gtlgdifsch avdnpkpqse
      841 lamlrqygpd vpepilqklv aafgelrsla dqgiinypys trevvnivkh lqkfpaegla
      901 nvvrnvfdfd synnemreil intlhkhgip igakptnvql akelplpdhk fmgywkidql
      961 gnagqkllcp tetkkidvkg pvylniqefp lerhearsls fteelafwtl plhdvnlvcd
     1021 vmvtkeeeae nvlyvttcnp vslyfmnvss ksghfvdlyd lfprtvgsvw qpfvtvaplg
     1081 nplkgqvvlh eaesnvvlll dtnngalrrl lllpdtqesp krtswwgske emsnykmcre
     1141 fshknwlvfy keegnclivl dvlegqthti slpinlksvf lvaedrwllv enktnrkfll
     1201 tkrahmeaed sevcqlyals eeladmgfgl ttgselsvph avssdqlsse nlsaavgqki
     1261 sspnrifsde hnyativigf pdllspsevy swkrnsslsg kraspsdpfy ygsqrktgaa
     1321 kqtncvtlla snqivrilap gdvplkdiyp kdvtppqasg ylevtdlnsk kikyiaiprs
     1381 qslspytswl skisdadall aplgkvglvs vdmgggvrlw etgldslmrs lqdwrnmigq
     1441 edgrpvqiti qrdsgldvss pkhgkvdpan mphvggntwa ggtggrdtag lggkggpyrl
     1501 daghrvyqis qaekdavpee vkraaremge kafkqrlkei qmseydasty erfsgavrrq
     1561 vqslriildn lqakgkerqw lrhqavgeld dakiidgltg ekaiykrrge lepqpgspqq
     1621 kpkrlrllvd vsgsmyrfng vdgrlersme avcmvmeafe nyehkfkydi vghsgdgyni
     1681 alvgsdklpk dnkqrleilk tmhahaqfcm sgdhtlegte haireitkee adeyfvivls
     1741 danlerygiq psrfaqaltt ntqvnafaif igslgdqadr lqrmlpagrs fiamdtkeip
     1801 qilqqiftst mlssa
//
LOCUS       XP_053914260            1092 aa            linear   VRT 09-MAR-2023
DEFINITION  SR-related and CTD-associated factor 4 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053914260
VERSION     XP_053914260.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058285.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1092
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1092
                     /product="SR-related and CTD-associated factor 4 isoform
                     X1"
                     /calculated_mol_wt=120435
     Region          5..135
                     /region_name="CID_SFRS15_SCAF4"
                     /note="CID (CTD-Interacting Domain) of Splicing factor
                     arginine serine rich 15; cd17005"
                     /db_xref="CDD:340802"
     Site            order(20..23,26,64,67..68,71,116)
                     /site_type="other"
                     /note="CTD binding site [polypeptide binding]"
                     /db_xref="CDD:340802"
     Region          <142..407
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          492..572
                     /region_name="RRM_SCAF4"
                     /note="RNA recognition motif (RRM) found in SR-related and
                     CTD-associated factor 4 (SCAF4) and similar proteins;
                     cd12461"
                     /db_xref="CDD:409894"
     Region          <917..>999
                     /region_name="PRK12678"
                     /note="transcription termination factor Rho; Provisional"
                     /db_xref="CDD:237171"
     CDS             1..1092
                     /gene="SCAF4"
                     /coded_by="XM_054058285.1:357..3635"
                     /db_xref="GeneID:104064766"
ORIGIN      
        1 meavnafnqe lfslmemkpp israkmilit kaaikaikly khvvqivekf ikkckpeykv
       61 pglyvidsiv rqsrhqfgtd kdvfgprfsk nitatfqyly lcpsedkski vrvlnlwqkn
      121 gvfkieiiqp lldmaagtsa tapmtenatn negsppppak vpseppqvta nsvptvpqlp
      181 ssdafaavaq lfqttqgqql qqilqtfqqp qkpqspvidn tvmaqvqait aqlkttaaqa
      241 peqkaafpps eqktsfdkkl ldrfdyddep eaaedskked sapspsvsqp altplsfsaq
      301 agwcsipggf pgegiqqpvf pqlpnmdpfq qrmmgmqqdp mrhqvplppn gqmpgfgllp
      361 tpqyppmaqp vipptapvqq tfqtpfpvqs eshmqkphqq dmeveqppvq egkrhvsdsr
      421 ksrsrsasrs pkrrrsrsgs rsrrsrhrrs rsrsrdrrrh spksrsqerr ererererrs
      481 kglpqikset vsvcsttlwv gqldkrttqq dvgslleefg piesinmipp rgcayivmvh
      541 rqdayralqk lsrgnfkvnq ksikiawaln kgikpdykqy wdvelgvtyi pwdkvkpedl
      601 esfceggmld netlcpewkg ipkkseneva qngggeathn epvspipkal pvpipvpmpa
      661 pitvpppqvp phpsgppvvg alqppaftap lgipppgfap gvpppppppf lrpgfnpmhl
      721 ppgflppgpp ppitppvsvp htpavnipns tatgvnedtt kdssvgnpip tvvsgsrgna
      781 ettdsskiyg tvpppvaptn vpapvtqgvp llgtqgvapp ppapvvglqt pstgllgarp
      841 gliplqrppg mpppplqrfp lmpprhmpph mmhrgpppgp ggfgmppphg mktpfpppgh
      901 fvrpggmqgs ggpggpednr dgrqfrndrq tftpnrdqer fgrrsfgnrv endrerysnr
      961 nddrdherpg nrdrrdwgrr sperdrhrdl edrnrrssgh rdrerdsrdr esrrdkeenr
     1021 gkekpemtdr adddknhesh sgkmedadiv selaagesep agvkpveelt seatssveqa
     1081 ekemgsvada pr
//
LOCUS       XP_053914271            1076 aa            linear   VRT 09-MAR-2023
DEFINITION  SR-related and CTD-associated factor 4 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053914271
VERSION     XP_053914271.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058296.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1076
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1076
                     /product="SR-related and CTD-associated factor 4 isoform
                     X2"
                     /calculated_mol_wt=118865
     Region          5..135
                     /region_name="CID_SFRS15_SCAF4"
                     /note="CID (CTD-Interacting Domain) of Splicing factor
                     arginine serine rich 15; cd17005"
                     /db_xref="CDD:340802"
     Site            order(20..23,26,64,67..68,71,116)
                     /site_type="other"
                     /note="CTD binding site [polypeptide binding]"
                     /db_xref="CDD:340802"
     Region          <142..395
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          476..556
                     /region_name="RRM_SCAF4"
                     /note="RNA recognition motif (RRM) found in SR-related and
                     CTD-associated factor 4 (SCAF4) and similar proteins;
                     cd12461"
                     /db_xref="CDD:409894"
     Region          <901..>983
                     /region_name="PRK12678"
                     /note="transcription termination factor Rho; Provisional"
                     /db_xref="CDD:237171"
     CDS             1..1076
                     /gene="SCAF4"
                     /coded_by="XM_054058296.1:357..3587"
                     /db_xref="GeneID:104064766"
ORIGIN      
        1 meavnafnqe lfslmemkpp israkmilit kaaikaikly khvvqivekf ikkckpeykv
       61 pglyvidsiv rqsrhqfgtd kdvfgprfsk nitatfqyly lcpsedkski vrvlnlwqkn
      121 gvfkieiiqp lldmaagtsa tapmtenatn negsppppak vpseppqvta nsvptvpqlp
      181 ssdafaavaq lfqttqgqql qqilqtfqqp qkpqspvidn tvmaqvqait aqlkttaaqa
      241 peqkaafpps eqktsfdkkl ldrfdyddep eaaedskked sapspsvsqp afgfpgegiq
      301 qpvfpqlpnm dpfqqrmmgm qqdpmrhqvp lppngqmpgf gllptpqypp maqpvippta
      361 pvqqtfqtpf pvqseshmqk phqqdmeveq ppvqegkrhv sdsrksrsrs asrspkrrrs
      421 rsgsrsrrsr hrrsrsrsrd rrrhspksrs qerrererer errskglpqi ksetvsvcst
      481 tlwvgqldkr ttqqdvgsll eefgpiesin mipprgcayi vmvhrqdayr alqklsrgnf
      541 kvnqksikia walnkgikpd ykqywdvelg vtyipwdkvk pedlesfceg gmldnetlcp
      601 ewkgipkkse nevaqnggge athnepvspi pkalpvpipv pmpapitvpp pqvpphpsgp
      661 pvvgalqppa ftaplgippp gfapgvpppp pppflrpgfn pmhlppgflp pgppppitpp
      721 vsvphtpavn ipnstatgvn edttkdssvg npiptvvsgs rgnaettdss kiygtvpppv
      781 aptnvpapvt qgvpllgtqg vappppapvv glqtpstgll garpgliplq rppgmppppl
      841 qrfplmpprh mpphmmhrgp ppgpggfgmp pphgmktpfp ppghfvrpgg mqgsggpggp
      901 ednrdgrqfr ndrqtftpnr dqerfgrrsf gnrvendrer ysnrnddrdh erpgnrdrrd
      961 wgrrsperdr hrdledrnrr ssghrdrerd srdresrrdk eenrgkekpe mtdradddkn
     1021 heshsgkmed adivselaag esepagvkpv eeltseatss veqaekemgs vadapr
//
LOCUS       XP_053914276             881 aa            linear   VRT 09-MAR-2023
DEFINITION  SR-related and CTD-associated factor 4 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053914276
VERSION     XP_053914276.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058301.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..881
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..881
                     /product="SR-related and CTD-associated factor 4 isoform
                     X3"
                     /calculated_mol_wt=96703
     Region          5..135
                     /region_name="CID_SFRS15_SCAF4"
                     /note="CID (CTD-Interacting Domain) of Splicing factor
                     arginine serine rich 15; cd17005"
                     /db_xref="CDD:340802"
     Site            order(20..23,26,64,67..68,71,116)
                     /site_type="other"
                     /note="CTD binding site [polypeptide binding]"
                     /db_xref="CDD:340802"
     Region          <136..407
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          492..572
                     /region_name="RRM_SCAF4"
                     /note="RNA recognition motif (RRM) found in SR-related and
                     CTD-associated factor 4 (SCAF4) and similar proteins;
                     cd12461"
                     /db_xref="CDD:409894"
     CDS             1..881
                     /gene="SCAF4"
                     /coded_by="XM_054058301.1:357..3002"
                     /db_xref="GeneID:104064766"
ORIGIN      
        1 meavnafnqe lfslmemkpp israkmilit kaaikaikly khvvqivekf ikkckpeykv
       61 pglyvidsiv rqsrhqfgtd kdvfgprfsk nitatfqyly lcpsedkski vrvlnlwqkn
      121 gvfkieiiqp lldmaagtsa tapmtenatn negsppppak vpseppqvta nsvptvpqlp
      181 ssdafaavaq lfqttqgqql qqilqtfqqp qkpqspvidn tvmaqvqait aqlkttaaqa
      241 peqkaafpps eqktsfdkkl ldrfdyddep eaaedskked sapspsvsqp altplsfsaq
      301 agwcsipggf pgegiqqpvf pqlpnmdpfq qrmmgmqqdp mrhqvplppn gqmpgfgllp
      361 tpqyppmaqp vipptapvqq tfqtpfpvqs eshmqkphqq dmeveqppvq egkrhvsdsr
      421 ksrsrsasrs pkrrrsrsgs rsrrsrhrrs rsrsrdrrrh spksrsqerr ererererrs
      481 kglpqikset vsvcsttlwv gqldkrttqq dvgslleefg piesinmipp rgcayivmvh
      541 rqdayralqk lsrgnfkvnq ksikiawaln kgikpdykqy wdvelgvtyi pwdkvkpedl
      601 esfceggmld netlcpewkg ipkkseneva qngggeathn epvspipkal pvpipvpmpa
      661 pitvpppqvp phpsgppvvg alqppaftap lgipppgfap gvpppppppf lrpgfnpmhl
      721 ppgflppgpp ppitppvsvp htpavnipns tatgvnedtt kdssvgnpip tvvsgsrgna
      781 ettdsskiyg tvpppvaptn vpapvtqgvp llesrsglsl gfkknmkemm ssttyadvls
      841 kevshevlpc psyefgtwpg citipsfsfc vsgftpreik a
//
LOCUS       XP_009565431             154 aa            linear   VRT 09-MAR-2023
DEFINITION  superoxide dismutase [Cu-Zn] [Cuculus canorus].
ACCESSION   XP_009565431
VERSION     XP_009565431.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009567136.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..154
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..154
                     /product="superoxide dismutase [Cu-Zn]"
                     /calculated_mol_wt=15755
     Region          16..149
                     /region_name="Sod_Cu"
                     /note="Copper/zinc superoxide dismutase (SODC); pfam00080"
                     /db_xref="CDD:459663"
     CDS             1..154
                     /gene="SOD1"
                     /coded_by="XM_009567136.2:86..550"
                     /db_xref="GeneID:104064768"
ORIGIN      
        1 matlkavcvm rgdgpvqgli hfeqqgngpv kvtgritgla dgdhgfhvhe fgdntngcis
       61 agphfnpegk qhggpkdaer hvgdlgnvta kggvadveie dpvislsgph svigrtmvvh
      121 ekrddlgrgg dneskitgna gprlacgvig iaks
//
LOCUS       XP_053914298             631 aa            linear   VRT 09-MAR-2023
DEFINITION  baculoviral IAP repeat-containing protein 2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053914298
VERSION     XP_053914298.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058323.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..631
                     /product="baculoviral IAP repeat-containing protein 2
                     isoform X1"
                     /calculated_mol_wt=71158
     Region          52..117
                     /region_name="BIR"
                     /note="Baculoviral inhibition of apoptosis protein repeat
                     domain; Found in inhibitors of apoptosis proteins (IAPs)
                     and other proteins. In higher eukaryotes, BIR domains
                     inhibit apoptosis by acting as direct inhibitors of the
                     caspase family of protease enzymes; cd00022"
                     /db_xref="CDD:237989"
     Site            order(78,83,85,92..94,96,100,105,109..110)
                     /site_type="active"
                     /note="peptide binding groove [active]"
                     /db_xref="CDD:237989"
     Site            order(86,89,106,113)
                     /site_type="other"
                     /note="Zn2+ binding site [ion binding]"
                     /db_xref="CDD:237989"
     Region          194..262
                     /region_name="BIR"
                     /note="Baculoviral inhibition of apoptosis protein repeat;
                     smart00238"
                     /db_xref="CDD:197595"
     Site            order(223,228,230,237..239,241,245,250,254..255)
                     /site_type="active"
                     /note="peptide binding groove [active]"
                     /db_xref="CDD:237989"
     Site            order(231,234,251,258)
                     /site_type="other"
                     /note="Zn2+ binding site [ion binding]"
                     /db_xref="CDD:237989"
     Region          280..349
                     /region_name="BIR"
                     /note="Baculoviral inhibition of apoptosis protein repeat;
                     smart00238"
                     /db_xref="CDD:197595"
     Site            order(310,315,317,324..326,328,332,337,341..342)
                     /site_type="active"
                     /note="peptide binding groove [active]"
                     /db_xref="CDD:237989"
     Site            order(318,321,338,345)
                     /site_type="other"
                     /note="Zn2+ binding site [ion binding]"
                     /db_xref="CDD:237989"
     Region          404..450
                     /region_name="UBA_BIRC2_3"
                     /note="UBA domain found in baculoviral IAP
                     repeat-containing protein BIRC2, BIRC3 and similar
                     proteins; cd14394"
                     /db_xref="CDD:270577"
     Region          467..557
                     /region_name="CARD_BIRC2_BIRC3"
                     /note="Caspase activation and recruitment domain found in
                     Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1)
                     and BIRC3 (c-IAP2); cd08329"
                     /db_xref="CDD:260038"
     Site            order(475,478,504..505,508,512,521,524..525,527..528)
                     /site_type="other"
                     /note="RING interface"
                     /db_xref="CDD:260038"
     Region          575..631
                     /region_name="RING-HC_BIRC2_3_7"
                     /note="RING finger, HC subclass, found in apoptosis
                     protein c-IAP1, c-IAP2, livin, and similar proteins;
                     cd16713"
                     /db_xref="CDD:438373"
     Site            order(576,580,585..589,611..612,616..617,619)
                     /site_type="other"
                     /note="E2 binding site [polypeptide binding]"
                     /db_xref="CDD:438373"
     Site            order(585,601,616..619)
                     /site_type="other"
                     /note="ubiquitin binding site [polypeptide binding]"
                     /db_xref="CDD:438373"
     CDS             1..631
                     /gene="BIRC2"
                     /coded_by="XM_054058323.1:1318..3213"
                     /db_xref="GeneID:104054981"
ORIGIN      
        1 mhtttsqrkt cpilpklsim nimenspfla sirkqsafcg elkyelscel yrmstfstfp
       61 snvpvsersl aragfyytgv qdkvkcfscg ltlgswqpgd namekhkqly ptcsfvqdml
      121 smnnlglssr safsplvtnn lspslhsisl spsfeqvgyf sgsfssfpqd pittravedl
      181 salrsefhnp smstedarlr tfhswpltfl sptdlakagl yylgtadkva cftcggqlsn
      241 wepkdnamse hrrhfpncpf vekltrdpls fnvsnvsmqt hearvktfin wparipvqpe
      301 qladagfyyv grnddvkcfc cdgglrcwes gddpwiehak wfprceyllh vkggefvsqi
      361 qarfphlleq llstsdtmpv desidppiih fepgespsed aimmntpvvk aalemgfsrr
      421 likqtvqski latgenykti ndlvsdllta edekkeeeke rqfeelesdd lslirknrka
      481 lfqhltcvlp ilgsllsakv iteiehdvik qktqtplqar elidtvlvkg neaasifrnc
      541 lrdcdpelyk dlfveknlky vptedisglp meeqlrrlqe ertckvcmdk evsivfipcg
      601 hlvvckecap slrkcpicrg tikgtvrtfl s
//
LOCUS       XP_053914308             532 aa            linear   VRT 09-MAR-2023
DEFINITION  baculoviral IAP repeat-containing protein 2 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053914308
VERSION     XP_053914308.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058333.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..532
                     /product="baculoviral IAP repeat-containing protein 2
                     isoform X2"
                     /calculated_mol_wt=59882
     Region          52..117
                     /region_name="BIR"
                     /note="Baculoviral inhibition of apoptosis protein repeat
                     domain; Found in inhibitors of apoptosis proteins (IAPs)
                     and other proteins. In higher eukaryotes, BIR domains
                     inhibit apoptosis by acting as direct inhibitors of the
                     caspase family of protease enzymes; cd00022"
                     /db_xref="CDD:237989"
     Site            order(78,83,85,92..94,96,100,105,109..110)
                     /site_type="active"
                     /note="peptide binding groove [active]"
                     /db_xref="CDD:237989"
     Site            order(86,89,106,113)
                     /site_type="other"
                     /note="Zn2+ binding site [ion binding]"
                     /db_xref="CDD:237989"
     Region          194..262
                     /region_name="BIR"
                     /note="Baculoviral inhibition of apoptosis protein repeat;
                     smart00238"
                     /db_xref="CDD:197595"
     Site            order(223,228,230,237..239,241,245,250,254..255)
                     /site_type="active"
                     /note="peptide binding groove [active]"
                     /db_xref="CDD:237989"
     Site            order(231,234,251,258)
                     /site_type="other"
                     /note="Zn2+ binding site [ion binding]"
                     /db_xref="CDD:237989"
     Region          280..349
                     /region_name="BIR"
                     /note="Baculoviral inhibition of apoptosis protein repeat;
                     smart00238"
                     /db_xref="CDD:197595"
     Site            order(310,315,317,324..326,328,332,337,341..342)
                     /site_type="active"
                     /note="peptide binding groove [active]"
                     /db_xref="CDD:237989"
     Site            order(318,321,338,345)
                     /site_type="other"
                     /note="Zn2+ binding site [ion binding]"
                     /db_xref="CDD:237989"
     Region          404..450
                     /region_name="UBA_BIRC2_3"
                     /note="UBA domain found in baculoviral IAP
                     repeat-containing protein BIRC2, BIRC3 and similar
                     proteins; cd14394"
                     /db_xref="CDD:270577"
     Region          476..532
                     /region_name="RING-HC_BIRC2_3_7"
                     /note="RING finger, HC subclass, found in apoptosis
                     protein c-IAP1, c-IAP2, livin, and similar proteins;
                     cd16713"
                     /db_xref="CDD:438373"
     Site            order(477,481,486..490,512..513,517..518,520)
                     /site_type="other"
                     /note="E2 binding site [polypeptide binding]"
                     /db_xref="CDD:438373"
     Site            order(486,502,517..520)
                     /site_type="other"
                     /note="ubiquitin binding site [polypeptide binding]"
                     /db_xref="CDD:438373"
     CDS             1..532
                     /gene="BIRC2"
                     /coded_by="XM_054058333.1:1319..2917"
                     /db_xref="GeneID:104054981"
ORIGIN      
        1 mhtttsqrkt cpilpklsim nimenspfla sirkqsafcg elkyelscel yrmstfstfp
       61 snvpvsersl aragfyytgv qdkvkcfscg ltlgswqpgd namekhkqly ptcsfvqdml
      121 smnnlglssr safsplvtnn lspslhsisl spsfeqvgyf sgsfssfpqd pittravedl
      181 salrsefhnp smstedarlr tfhswpltfl sptdlakagl yylgtadkva cftcggqlsn
      241 wepkdnamse hrrhfpncpf vekltrdpls fnvsnvsmqt hearvktfin wparipvqpe
      301 qladagfyyv grnddvkcfc cdgglrcwes gddpwiehak wfprceyllh vkggefvsqi
      361 qarfphlleq llstsdtmpv desidppiih fepgespsed aimmntpvvk aalemgfsrr
      421 likqtvqski latgenykti ndlvsdllta edekkeeeke rqfeelesgl pmeeqlrrlq
      481 eertckvcmd kevsivfipc ghlvvckeca pslrkcpicr gtikgtvrtf ls
//
LOCUS       XP_053914321             188 aa            linear   VRT 09-MAR-2023
DEFINITION  porimin [Cuculus canorus].
ACCESSION   XP_053914321
VERSION     XP_053914321.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058346.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..188
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..188
                     /product="porimin"
                     /calculated_mol_wt=19485
     Region          <116..172
                     /region_name="MGC-24"
                     /note="Multi-glycosylated core protein 24 (MGC-24),
                     sialomucin; pfam05283"
                     /db_xref="CDD:461610"
     CDS             1..188
                     /gene="TMEM123"
                     /coded_by="XM_054058346.1:93..659"
                     /db_xref="GeneID:104055063"
ORIGIN      
        1 mrllpgawcv aallmlapgs rneeinssss tasfattpvp klqgnssssn ltvssstqst
       61 ttstagvstn tthlastgqp tnttvpvtpt tqptetnqtt rsttassvts sqfnitvvtt
      121 skisftsvta tskseavtak tsrfdlgsfv ggivltlgvl vilyigckty hsrrgiqyrt
      181 idehdaii
//
LOCUS       XP_053914341             804 aa            linear   VRT 09-MAR-2023
DEFINITION  vezatin isoform X1 [Cuculus canorus].
ACCESSION   XP_053914341
VERSION     XP_053914341.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058366.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..804
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..804
                     /product="vezatin isoform X1"
                     /calculated_mol_wt=92212
     Region          151..442
                     /region_name="Vezatin"
                     /note="Mysoin-binding motif of peroxisomes; pfam12632"
                     /db_xref="CDD:463650"
     CDS             1..804
                     /gene="VEZT"
                     /coded_by="XM_054058366.1:157..2571"
                     /db_xref="GeneID:104055189"
ORIGIN      
        1 mtpefdeevv fensplyqyl qdlgqtdfev cssvsqkaeq caaaesqker tvhapqkqst
       61 lsklveffrs wfpfpqykkn ddilhrldvg frfdtlrtil qqevllqedv eliefldpsi
      121 lsagqckqqe ngqlptlrsl atpniwdlsl llafvsalfi lpswkesswl lwglvllvya
      181 vfrvwgtwrt aklqmslrky ciqleetvan sraftnlvrk alrliqetev isrgftllld
      241 rvsaacpfnk agqhpsqhli glrkavyrsv ranfrasrla tlymlknypl nsesdnvtsy
      301 icvvpfkelg lglseeqvse eeahnltdgf slpalkvlfq lwvgqsseff rrlvlllspa
      361 naspktlvsp erlphhilsd vtqglphtha acleelkrsy efyryfetqh qsgferstrt
      421 kqnsrelnsl qtavrslqlh lkallnevii ledeleklvs tketpeltte ahqvleqklk
      481 fiqphiqasn scweeaisqv ekmsgrnpdk kgklevsrdn lqrtavpltq paiyienkdp
      541 ipeeqeleay vdysdtendy kredfycfsq eererqerer qeskrvlqel ksvlgfkase
      601 ierqkwkqll fsdhaavkpl spveplklln nleshmnsdt ekqdcsqsyd kseerdstpk
      661 vnaadksrtk ylyedpemet nkdnttdegi stgaeermcy qhggeveele psntdgvevl
      721 qspskdalhs kikhrlaqlr istdlnftsg laaqvaarsf tfttmqeetf gdeeeeeeen
      781 teecedlved cknedrdpes egka
//
LOCUS       XP_053914351             800 aa            linear   VRT 09-MAR-2023
DEFINITION  vezatin isoform X2 [Cuculus canorus].
ACCESSION   XP_053914351
VERSION     XP_053914351.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058376.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..800
                     /product="vezatin isoform X2"
                     /calculated_mol_wt=91714
     Region          151..438
                     /region_name="Vezatin"
                     /note="Mysoin-binding motif of peroxisomes; pfam12632"
                     /db_xref="CDD:463650"
     CDS             1..800
                     /gene="VEZT"
                     /coded_by="XM_054058376.1:156..2558"
                     /db_xref="GeneID:104055189"
ORIGIN      
        1 mtpefdeevv fensplyqyl qdlgqtdfev cssvsqkaeq caaaesqker tvhapqkqst
       61 lsklveffrs wfpfpqykkn ddilhrldvg frfdtlrtil qqevllqedv eliefldpsi
      121 lsagqckqqe ngqlptlrsl atpniwdlsl llafvsalfi lpswkesswl lwglvllvya
      181 vfrvwgtwrt aklqmslrky ciqleetvan sraftnlvrk alrliqetev isrgftlvsa
      241 acpfnkagqh psqhliglrk avyrsvranf rasrlatlym lknyplnses dnvtsyicvv
      301 pfkelglgls eeqvseeeah nltdgfslpa lkvlfqlwvg qsseffrrlv lllspanasp
      361 ktlvsperlp hhilsdvtqg lphthaacle elkrsyefyr yfetqhqsgf erstrtkqns
      421 relnslqtav rslqlhlkal lneviilede leklvstket peltteahqv leqklkfiqp
      481 hiqasnscwe eaisqvekms grnpdkkgkl evsrdnlqrt avpltqpaiy ienkdpipee
      541 qeleayvdys dtendykred fycfsqeere rqererqesk rvlqelksvl gfkaseierq
      601 kwkqllfsdh aavkplspve plkllnnles hmnsdtekqd csqsydksee rdstpkvnaa
      661 dksrtkylye dpemetnkdn ttdegistga eermcyqhgg eveelepsnt dgvevlqsps
      721 kdalhskikh rlaqlristd lnftsglaaq vaarsftftt mqeetfgdee eeeeenteec
      781 edlvedckne drdpesegka
//
LOCUS       XP_053914362             665 aa            linear   VRT 09-MAR-2023
DEFINITION  vezatin isoform X3 [Cuculus canorus].
ACCESSION   XP_053914362
VERSION     XP_053914362.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058387.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..665
                     /product="vezatin isoform X3"
                     /calculated_mol_wt=76273
     Region          12..303
                     /region_name="Vezatin"
                     /note="Mysoin-binding motif of peroxisomes; pfam12632"
                     /db_xref="CDD:463650"
     CDS             1..665
                     /gene="VEZT"
                     /coded_by="XM_054058387.1:206..2203"
                     /db_xref="GeneID:104055189"
ORIGIN      
        1 mtyftdwdls lllafvsalf ilpswkessw llwglvllvy avfrvwgtwr taklqmslrk
       61 yciqleetva nsraftnlvr kalrliqete visrgftlll drvsaacpfn kagqhpsqhl
      121 iglrkavyrs vranfrasrl atlymlknyp lnsesdnvts yicvvpfkel glglseeqvs
      181 eeeahnltdg fslpalkvlf qlwvgqssef frrlvlllsp anaspktlvs perlphhils
      241 dvtqglphth aacleelkrs yefyryfetq hqsgferstr tkqnsrelns lqtavrslql
      301 hlkallnevi iledeleklv stketpeltt eahqvleqkl kfiqphiqas nscweeaisq
      361 vekmsgrnpd kkgklevsrd nlqrtavplt qpaiyienkd pipeeqelea yvdysdtend
      421 ykredfycfs qeererqere rqeskrvlqe lksvlgfkas eierqkwkql lfsdhaavkp
      481 lspveplkll nnleshmnsd tekqdcsqsy dkseerdstp kvnaadksrt kylyedpeme
      541 tnkdnttdeg istgaeermc yqhggeveel epsntdgvev lqspskdalh skikhrlaql
      601 ristdlnfts glaaqvaars ftfttmqeet fgdeeeeeee nteecedlve dcknedrdpe
      661 segka
//
LOCUS       XP_053914370             621 aa            linear   VRT 09-MAR-2023
DEFINITION  vezatin isoform X4 [Cuculus canorus].
ACCESSION   XP_053914370
VERSION     XP_053914370.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058395.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..621
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..621
                     /product="vezatin isoform X4"
                     /calculated_mol_wt=71715
     Region          151..442
                     /region_name="Vezatin"
                     /note="Mysoin-binding motif of peroxisomes; pfam12632"
                     /db_xref="CDD:463650"
     CDS             1..621
                     /gene="VEZT"
                     /coded_by="XM_054058395.1:160..2025"
                     /db_xref="GeneID:104055189"
ORIGIN      
        1 mtpefdeevv fensplyqyl qdlgqtdfev cssvsqkaeq caaaesqker tvhapqkqst
       61 lsklveffrs wfpfpqykkn ddilhrldvg frfdtlrtil qqevllqedv eliefldpsi
      121 lsagqckqqe ngqlptlrsl atpniwdlsl llafvsalfi lpswkesswl lwglvllvya
      181 vfrvwgtwrt aklqmslrky ciqleetvan sraftnlvrk alrliqetev isrgftllld
      241 rvsaacpfnk agqhpsqhli glrkavyrsv ranfrasrla tlymlknypl nsesdnvtsy
      301 icvvpfkelg lglseeqvse eeahnltdgf slpalkvlfq lwvgqsseff rrlvlllspa
      361 naspktlvsp erlphhilsd vtqglphtha acleelkrsy efyryfetqh qsgferstrt
      421 kqnsrelnsl qtavrslqlh lkallnevii ledeleklvs tketpeltte ahqvleqklk
      481 fiqphiqasn scweeaisqv ekmsgrnpdk kgklevsrdn lqrtavpltq paiyienkdp
      541 ipeeqeleay vdysdtendy kredfycfsq eererqerer qeskrvlqel ksvlgfkase
      601 ierqkwkqll fsdhgvksew n
//
LOCUS       XP_053914379             617 aa            linear   VRT 09-MAR-2023
DEFINITION  vezatin isoform X5 [Cuculus canorus].
ACCESSION   XP_053914379
VERSION     XP_053914379.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058404.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..617
                     /product="vezatin isoform X5"
                     /calculated_mol_wt=71217
     Region          151..438
                     /region_name="Vezatin"
                     /note="Mysoin-binding motif of peroxisomes; pfam12632"
                     /db_xref="CDD:463650"
     CDS             1..617
                     /gene="VEZT"
                     /coded_by="XM_054058404.1:159..2012"
                     /db_xref="GeneID:104055189"
ORIGIN      
        1 mtpefdeevv fensplyqyl qdlgqtdfev cssvsqkaeq caaaesqker tvhapqkqst
       61 lsklveffrs wfpfpqykkn ddilhrldvg frfdtlrtil qqevllqedv eliefldpsi
      121 lsagqckqqe ngqlptlrsl atpniwdlsl llafvsalfi lpswkesswl lwglvllvya
      181 vfrvwgtwrt aklqmslrky ciqleetvan sraftnlvrk alrliqetev isrgftlvsa
      241 acpfnkagqh psqhliglrk avyrsvranf rasrlatlym lknyplnses dnvtsyicvv
      301 pfkelglgls eeqvseeeah nltdgfslpa lkvlfqlwvg qsseffrrlv lllspanasp
      361 ktlvsperlp hhilsdvtqg lphthaacle elkrsyefyr yfetqhqsgf erstrtkqns
      421 relnslqtav rslqlhlkal lneviilede leklvstket peltteahqv leqklkfiqp
      481 hiqasnscwe eaisqvekms grnpdkkgkl evsrdnlqrt avpltqpaiy ienkdpipee
      541 qeleayvdys dtendykred fycfsqeere rqererqesk rvlqelksvl gfkaseierq
      601 kwkqllfsdh gvksewn
//
LOCUS       XP_053914390            4839 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase HERC2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053914390
VERSION     XP_053914390.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058415.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4839
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..4839
                     /product="E3 ubiquitin-protein ligase HERC2 isoform X1"
                     /calculated_mol_wt=528842
     Region          438..741
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          728..777
                     /region_name="RCC1"
                     /note="Regulator of chromosome condensation (RCC1) repeat;
                     pfam00415"
                     /db_xref="CDD:395335"
     Region          1212..1284
                     /region_name="Cyt-b5"
                     /note="Cytochrome b5-like Heme/Steroid binding domain;
                     pfam00173"
                     /db_xref="CDD:459698"
     Region          1872..1932
                     /region_name="MIB_HERC2"
                     /note="Mib_herc2; pfam06701"
                     /db_xref="CDD:461991"
     Region          2462..2509
                     /region_name="UBA_HERC2"
                     /note="UBA domain found in probable E3 ubiquitin-protein
                     ligase HERC2 and similar proteins; cd14402"
                     /db_xref="CDD:270585"
     Region          2558..2635
                     /region_name="Cul7"
                     /note="Mouse development and cellular proliferation
                     protein Cullin-7; pfam11515"
                     /db_xref="CDD:463286"
     Region          2643..2700
                     /region_name="SH3_15"
                     /note="Mind bomb SH3 repeat domain; pfam18346"
                     /db_xref="CDD:465720"
     Region          2710..2754
                     /region_name="ZZ_HERC2"
                     /note="Zinc finger, ZZ type. Zinc finger present in HERC2
                     and related proteins. HERC2 is a potential E3 ubiquitin
                     protein ligase and/or guanine nucleotide exchange factor.
                     The ZZ motif coordinates two zinc ions and most likely
                     participates in ligand binding or...; cd02344"
                     /db_xref="CDD:239084"
     Site            order(2712,2715,2727,2730,2736,2739,2745,2749)
                     /site_type="other"
                     /note="Zinc-binding sites [ion binding]"
                     /db_xref="CDD:239084"
     Site            order(2712,2715,2736,2739)
                     /site_type="other"
                     /note="zinc cluster 1 [ion binding]"
                     /db_xref="CDD:239084"
     Site            order(2713,2724,2726,2732,2734)
                     /site_type="active"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239084"
     Site            order(2725,2740,2751,2754)
                     /site_type="active"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239084"
     Site            order(2727,2730,2745,2749)
                     /site_type="other"
                     /note="zinc cluster 2 [ion binding]"
                     /db_xref="CDD:239084"
     Region          2769..2914
                     /region_name="APC10-HERC2"
                     /note="APC10-like DOC1 domain present in HERC2 (HECT
                     domain and RLD2); cd08664"
                     /db_xref="CDD:176485"
     Site            order(2812,2840,2846,2848,2907)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:176485"
     Region          2952..3305
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          3949..4297
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          4426..4797
                     /region_name="HECTc"
                     /note="HECT domain; C-terminal catalytic domain of a
                     subclass of Ubiquitin-protein ligase (E3). It binds
                     specific ubiquitin-conjugating enzymes (E2), accepts
                     ubiquitin from E2, transfers ubiquitin to substrate lysine
                     side chains, and transfers additional...; cd00078"
                     /db_xref="CDD:238033"
     Site            order(4432,4478,4489,4556,4727,4761..4762,4765..4769,4789,
                     4796)
                     /site_type="active"
                     /note="catalytic cleft [active]"
                     /db_xref="CDD:238033"
     Site            order(4584,4587..4588,4590..4591,4594,4601,4604..4605,
                     4607,4613,4618,4635,4639)
                     /site_type="active"
                     /note="E2 interaction site [active]"
                     /db_xref="CDD:238033"
     CDS             1..4839
                     /gene="HERC2"
                     /coded_by="XM_054058415.1:127..14646"
                     /db_xref="GeneID:104066345"
ORIGIN      
        1 mssesfclaa qarfdskwlk tdlqlaftrd glcglwnemv kdgeivypgt dltqsgelpp
       61 rkddvtecqt askkeeqndk ekkdeeetpl ptyraksive swvwgkqpdv nelkeclhvl
      121 vkeqqtlaaq tattalsamr lkqrlviler yfialnrtvl qenvkvkwks sniplpavdk
      181 ksprpvgkgv eglarvgsra alsfafaflr rawrsgedad lcsellqesl dalralpeas
      241 lfdegtvssv wlevveratk flrsvvtgdv hgtpstkgpg niplqdqyla laillelavq
      301 rgtlsqmlsa vmlllqlwdn gtretdners aqgtsapllp llqrfqsiic nkevpnteee
      361 iqlltyplsp nesflryltl pqdnelaidl rqtavvimah ldrlatpcmp pqcssptshk
      421 gslqeviawg ligwkyyanv sgpiqcegla nlgvvqvaca ekrflilsrn grvytqayns
      481 dalgpqlvqs lasrnivkia ahsdghhyla lsangevfsw gcgdggrlgh gdtvpleepk
      541 misalsgkqa gkhivhiacg stysaaitae gelytwgrgn ygrlghgsse dqtipmlvtg
      601 lkglkvidvs cgsgdaqtla vtengqvwsw gdgdygklgr ggsdgcktpk lieklqdldi
      661 vkvrcgsqfs ialtkdgqvy twgkgdnqrl ghgteehvry pklleglkgk kvidvaagst
      721 hclaltedse vhswgsndqc qhfdtlritk peptalpgld tkhivgiacg paqsfawssc
      781 sewsiglrvp fvvdvctmtf eqldlllrqv tegmdgssdw pppqekecma vatlnllrlq
      841 lhaaishqvd peclglglgs illnslkqtv vtlasnagvl ntvqsaaqav lqsgwsvllp
      901 taeerarals allpsavsgn emnvspgrrf midllvgslm adgglesaln aaitaeiqdi
      961 eakkeaqkek eideqeanas tlhrnrtpld kdlintgiye sagkqslplv qliqqllrni
     1021 asqtiaklkd varrisscme yehcikersa sldlllrfqr llvsklypgd cvgqvpntys
     1081 pdllgvgsll kkytallcth igdilpvats iastshrhfa evsqvvdgdl tgillpelvv
     1141 sivlllskna ilmqeagaip llagllehld rfnhlapgke rddnedlawp gimgsfftgq
     1201 scrnneevtl irkadlenhn kdggfwtvid gkvydikdfq tqsltgssil aqfagedpvv
     1261 aleaalqfed trdsmhafcv gqymepdqev ittpdlstls splidternl glllglhasy
     1321 lamstplspl evecakwlks sifsgglqts qihysyneek dedhcsspgn ttpnksklyt
     1381 hrltlsdhsq pflqaiadnn iqdhtvkdfl cqieryckqc hlttpitfpp ehpveevgrl
     1441 llccllkhed lghvalslvh pgtlgvdqvk hktlpksvvd vcrvvyqakc slikthqeqg
     1501 rsykevcapv ierlrflfne lrpavcndls imskfkllss lprwrrvaqk iirekrkkrv
     1561 pkksesadve eskigneesd leescvvphs pvpidkrpip ikspkdkwqp llstvtgvhr
     1621 ykwlkqnvqg lypqsallnt ivefalkeep vdvekmrkcl lkqleraevr legidtilkl
     1681 aaknfllpsv qyamfcgwqr lipeganige pltdclkdvd lippfnrmll evtfgklyaw
     1741 aiqnvrnill danakfkelg vqpvplqtit nenpagpslg tipqarfllv mlnmltlqhg
     1801 antlslllns gmlaltqtal rligpssdni eedmiassqg asatvleesr kettpvqlpv
     1861 sgpelaammk igtrvvrgvd wkwgdqdgpp pglgrvigel gedgwirvqw dtgstnsyrm
     1921 gkegkydlkl aepppatqpt tedsdtedds egeqvernlh ptsmmltstv nllqtlclsa
     1981 gvhaevmqsd atrtlcgllr mlvesgtidk saslpnklvy keqhrswctl gfirsialmp
     2041 qmcstlstsq witllmkive ghesftaasl qrqilavhll kavlpswdkn ersrdmkflv
     2101 eklfgflgsl lstcssdipl lrestlrrrk arpqasltat hsstlaeeiv allrtlhsls
     2161 qwnglinkyi nsqltsithi fagkqsegtv lddyfpdten pevgglmavl aviggidsrl
     2221 rlggqvvhde fgegtvtrit pkgkitvqfy dmrtcrvcpl nqlkplpvva fnvnnlpfte
     2281 pmlsiwaqlv nlagskiekq rmkspnqgls gqvdldllrc qqlklyilka grallshqdt
     2341 lrqilsqpav qecasnpaed gavaspdigd mspegpqppm illqqllsaa tqpspvkaif
     2401 dkqeleaaal avcqylaves thpstpvfed cssseattpi tvqhirptkv kkckqspipp
     2461 lpivvqlmem gfprkniefa lkslsgtsgs asglpgveal vgwlldhpdv qitdlsdadt
     2521 isdeysdeev aeeveeaeaa cpvpsgavvt esqtykkrad flsnddyavy vreniqvgmm
     2581 vrccrtyeev cegdvgkvik ldrdglhdln vqcdwqqkgg tywvryihve llgfppqssa
     2641 shikigdkvr vkssvttpky kwgsvthrsv gvvkafsang kdvivdfpqq shwtgllsem
     2701 elvpsihpgv tcdgcqmfpi ngprfkcrnc ddfdfcetcf ktrkhntrht fgrinepgqs
     2761 pvfcgrsgkq lkrrhssqrg mllddwsriv knlnvsssvn qasrlidgse qcwqssgsqg
     2821 khwirleifp dvlvhrlkmi vdpadssymp slvvvsggns lnnlielkti ninptdttvp
     2881 llsdcteyhr yieiaikqcr ssgidckihg lsilgrirae dedlaavpfl asdneeeddd
     2941 kantgslvrk kaaglesaat irtkvfvwgl ndkdqlgglk gskikvpsfs etlsalnvvq
     3001 vaggskslfa vtvegkvyac geatngrlgl gissgtvpip rqitalsnyv vkkvavhsgg
     3061 rhamaltvdg kvfswgegdd gklghfsrmn cdkprlieal ktkrirdiac gsshsaaits
     3121 sgelytwglg eygrlghgdn ttqlkpkmvk vllghrviqv acgsrdaqtl altdeglvfs
     3181 wgdgdfgklg rggsegcnip qnierlngqg vcqiecgaqf slaltksgvv wtwgkgdyfr
     3241 lghgtdvhvr kpqvveglrg kkivhvavga lhclavtdtg qvyawgdndh gqqgngtttv
     3301 nrkptlvqgl egqkitrvac gsshsvawtt vdvatpsvhe pvlfqtardp lgasylgvps
     3361 dadssaasnk lsgansskpn rpslakills ldgnvakqqa lshilvalqi myardavvga
     3421 lmpasmiapv ecpssspapp sdatstgspa ngdecmlagd veerlspnpw qdrrgevvps
     3481 edavtpsavt psaaaassrp fipvtddpga atiiaetmtk tkedvesqsk vsgpepqyld
     3541 eftsllvpdd trvmvdllkl avsnragekg kdvlsavlsg mgtaypqvad mllelcvtel
     3601 edvatdsqsg rlssqpvvve sshpytddts ssgtvkipga eglrvefdrq csterrhdpl
     3661 timdgvnriv svrsgrewsd wsselripgd elkwkfisdg svngwgwrft vypimpaagp
     3721 kdllsdrcil scpsmdlvtc lldfrlnfas nrsivprlaa slaacaqlsa laaghrmwal
     3781 qrlrklltte fgqsininri lgdndgetra lsftgsalaa lvkglpealq rqfdyedpiv
     3841 rggkqllhsp ffkvlvalac dleldtlpcc aethkwawfr rycmasrvav aldkrtplpr
     3901 lfldevakki relmadnenm dvlhechdvf kreqdeqlvq wmnrrpddwt lsaggsgtiy
     3961 gwghnhrgql ggiegakvkv ptpcealatl rpvqliggeq tlfavtadgk lyatgygagg
     4021 rlgiggtesv stptllesiq hvfikkvavn sggkhclals segevyswge aedgklghgn
     4081 rspcdrprvi eslrgievvd iaaggahsac itaagdlftw gkgrygrlgh gdsedqlkpk
     4141 lvealqgyrv idiacgsgda qtlcltdddt vwswgdgdyg klgrggsdgc kvpmkidslt
     4201 glgvvkvecg sqfsvaltks gavytwgkgd yhrlghgsdd hvrrprqvqg lqgkkviaia
     4261 tgslhcvcct edgevytwgd ndegqlgdgt tnaiqrprlv aalqgkkinr vacgsahtla
     4321 wstskpanag klptqvpmey nhlqeipiis lrnrllllhh iselfcpcip mfdlegrlde
     4381 tgqgpsvgfd tlrgilisqg keaafrkvvq atmvrdrqhg pvvelnriqv krsrskggla
     4441 gpdgtksvfg qmcakmssfs pdslllphrv wkvkfvgesv ddcgggyses iaemceelqn
     4501 gltpllivtp ngrdesganr dcfllnpaak sllhmnmfrf lgvllgiair tgsplslnla
     4561 epvwkqlagm sltiadlsev dkdfipglmy irdneatsee feamslpftv pnasgqdiql
     4621 sskythitld nraeyvrlai nyrlhefdeq vaavregmar vvpvpllslf tgyeletmvc
     4681 gspdiplhll ksvatykgie ptasliqwfw evmesfsnte rslflrfvwg rtrlprtiad
     4741 frgrdfviqv ldkynppdhf lpesytcffl lklprysckq vleeklkyai hfcksidtdd
     4801 yarialtgep aaddssddsd nedadsfasd stqdyltgh
//
LOCUS       XP_053914399            4834 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase HERC2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053914399
VERSION     XP_053914399.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058424.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4834
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..4834
                     /product="E3 ubiquitin-protein ligase HERC2 isoform X2"
                     /calculated_mol_wt=528398
     Region          433..736
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          723..772
                     /region_name="RCC1"
                     /note="Regulator of chromosome condensation (RCC1) repeat;
                     pfam00415"
                     /db_xref="CDD:395335"
     Region          1207..1279
                     /region_name="Cyt-b5"
                     /note="Cytochrome b5-like Heme/Steroid binding domain;
                     pfam00173"
                     /db_xref="CDD:459698"
     Region          1867..1927
                     /region_name="MIB_HERC2"
                     /note="Mib_herc2; pfam06701"
                     /db_xref="CDD:461991"
     Region          2457..2504
                     /region_name="UBA_HERC2"
                     /note="UBA domain found in probable E3 ubiquitin-protein
                     ligase HERC2 and similar proteins; cd14402"
                     /db_xref="CDD:270585"
     Region          2553..2630
                     /region_name="Cul7"
                     /note="Mouse development and cellular proliferation
                     protein Cullin-7; pfam11515"
                     /db_xref="CDD:463286"
     Region          2638..2695
                     /region_name="SH3_15"
                     /note="Mind bomb SH3 repeat domain; pfam18346"
                     /db_xref="CDD:465720"
     Region          2705..2749
                     /region_name="ZZ_HERC2"
                     /note="Zinc finger, ZZ type. Zinc finger present in HERC2
                     and related proteins. HERC2 is a potential E3 ubiquitin
                     protein ligase and/or guanine nucleotide exchange factor.
                     The ZZ motif coordinates two zinc ions and most likely
                     participates in ligand binding or...; cd02344"
                     /db_xref="CDD:239084"
     Site            order(2707,2710,2722,2725,2731,2734,2740,2744)
                     /site_type="other"
                     /note="Zinc-binding sites [ion binding]"
                     /db_xref="CDD:239084"
     Site            order(2707,2710,2731,2734)
                     /site_type="other"
                     /note="zinc cluster 1 [ion binding]"
                     /db_xref="CDD:239084"
     Site            order(2708,2719,2721,2727,2729)
                     /site_type="active"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239084"
     Site            order(2720,2735,2746,2749)
                     /site_type="active"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239084"
     Site            order(2722,2725,2740,2744)
                     /site_type="other"
                     /note="zinc cluster 2 [ion binding]"
                     /db_xref="CDD:239084"
     Region          2764..2909
                     /region_name="APC10-HERC2"
                     /note="APC10-like DOC1 domain present in HERC2 (HECT
                     domain and RLD2); cd08664"
                     /db_xref="CDD:176485"
     Site            order(2807,2835,2841,2843,2902)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:176485"
     Region          2947..3300
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          3944..4292
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          4421..4792
                     /region_name="HECTc"
                     /note="HECT domain; C-terminal catalytic domain of a
                     subclass of Ubiquitin-protein ligase (E3). It binds
                     specific ubiquitin-conjugating enzymes (E2), accepts
                     ubiquitin from E2, transfers ubiquitin to substrate lysine
                     side chains, and transfers additional...; cd00078"
                     /db_xref="CDD:238033"
     Site            order(4427,4473,4484,4551,4722,4756..4757,4760..4764,4784,
                     4791)
                     /site_type="active"
                     /note="catalytic cleft [active]"
                     /db_xref="CDD:238033"
     Site            order(4579,4582..4583,4585..4586,4589,4596,4599..4600,
                     4602,4608,4613,4630,4634)
                     /site_type="active"
                     /note="E2 interaction site [active]"
                     /db_xref="CDD:238033"
     CDS             1..4834
                     /gene="HERC2"
                     /coded_by="XM_054058424.1:127..14631"
                     /db_xref="GeneID:104066345"
ORIGIN      
        1 mssesfclaa qarfdskwlk tdlqlaftrd glcglwnemv kdgeivypgt dltqsgelpp
       61 rkddvtecqt askkeeqndk ekkdeeetpl ptyraksive swvwgkqpdv nelkeclhvl
      121 vkeqqtlaaq tattalsamr lkqrlviler yfialnrtvl qenvkvkwks sniplpavdk
      181 ksprpvgkgv eglarvgsra alsfafaflr rawrsgedad lcsellqesl dalralpeas
      241 lfdegtvssv wlevveratk flrdvhgtps tkgpgniplq dqylalaill elavqrgtls
      301 qmlsavmlll qlwdngtret dnersaqgts apllpllqrf qsiicnkevp nteeeiqllt
      361 yplspnesfl ryltlpqdne laidlrqtav vimahldrla tpcmppqcss ptshkgslqe
      421 viawgligwk yyanvsgpiq ceglanlgvv qvacaekrfl ilsrngrvyt qaynsdalgp
      481 qlvqslasrn ivkiaahsdg hhylalsang evfswgcgdg grlghgdtvp leepkmisal
      541 sgkqagkhiv hiacgstysa aitaegelyt wgrgnygrlg hgssedqtip mlvtglkglk
      601 vidvscgsgd aqtlavteng qvwswgdgdy gklgrggsdg cktpkliekl qdldivkvrc
      661 gsqfsialtk dgqvytwgkg dnqrlghgte ehvrypklle glkgkkvidv aagsthclal
      721 tedsevhswg sndqcqhfdt lritkpepta lpgldtkhiv giacgpaqsf awsscsewsi
      781 glrvpfvvdv ctmtfeqldl llrqvtegmd gssdwpppqe kecmavatln llrlqlhaai
      841 shqvdpeclg lglgsillns lkqtvvtlas nagvlntvqs aaqavlqsgw svllptaeer
      901 aralsallps avsgnemnvs pgrrfmidll vgslmadggl esalnaaita eiqdieakke
      961 aqkekeideq eanastlhrn rtpldkdlin tgiyesagkq slplvqliqq llrniasqti
     1021 aklkdvarri sscmeyehci kersasldll lrfqrllvsk lypgdcvgqv pntyspdllg
     1081 vgsllkkyta llcthigdil pvatsiasts hrhfaevsqv vdgdltgill pelvvsivll
     1141 lsknailmqe agaipllagl lehldrfnhl apgkerddne dlawpgimgs fftgqscrnn
     1201 eevtlirkad lenhnkdggf wtvidgkvyd ikdfqtqslt gssilaqfag edpvvaleaa
     1261 lqfedtrdsm hafcvgqyme pdqevittpd lstlssplid ternlglllg lhasylamst
     1321 plspleveca kwlkssifsg glqtsqihys yneekdedhc sspgnttpnk sklythrltl
     1381 sdhsqpflqa iadnniqdht vkdflcqier yckqchlttp itfppehpve evgrlllccl
     1441 lkhedlghva lslvhpgtlg vdqvkhktlp ksvvdvcrvv yqakcslikt hqeqgrsyke
     1501 vcapvierlr flfnelrpav cndlsimskf kllsslprwr rvaqkiirek rkkrvpkkse
     1561 sadveeskig neesdleesc vvphspvpid krpipikspk dkwqpllstv tgvhrykwlk
     1621 qnvqglypqs allntivefa lkeepvdvek mrkcllkqle raevrlegid tilklaaknf
     1681 llpsvqyamf cgwqrlipeg anigepltdc lkdvdlippf nrmllevtfg klyawaiqnv
     1741 rnilldanak fkelgvqpvp lqtitnenpa gpslgtipqa rfllvmlnml tlqhgantls
     1801 lllnsgmlal tqtalrligp ssdnieedmi assqgasatv leesrkettp vqlpvsgpel
     1861 aammkigtrv vrgvdwkwgd qdgpppglgr vigelgedgw irvqwdtgst nsyrmgkegk
     1921 ydlklaeppp atqpttedsd teddsegeqv ernlhptsmm ltstvnllqt lclsagvhae
     1981 vmqsdatrtl cgllrmlves gtidksaslp nklvykeqhr swctlgfirs ialmpqmcst
     2041 lstsqwitll mkiveghesf taaslqrqil avhllkavlp swdknersrd mkflveklfg
     2101 flgsllstcs sdipllrest lrrrkarpqa sltathsstl aeeivallrt lhslsqwngl
     2161 inkyinsqlt sithifagkq segtvlddyf pdtenpevgg lmavlavigg idsrlrlggq
     2221 vvhdefgegt vtritpkgki tvqfydmrtc rvcplnqlkp lpvvafnvnn lpftepmlsi
     2281 waqlvnlags kiekqrmksp nqglsgqvdl dllrcqqlkl yilkagrall shqdtlrqil
     2341 sqpavqecas npaedgavas pdigdmspeg pqppmillqq llsaatqpsp vkaifdkqel
     2401 eaaalavcqy lavesthpst pvfedcssse attpitvqhi rptkvkkckq spipplpivv
     2461 qlmemgfprk niefalksls gtsgsasglp gvealvgwll dhpdvqitdl sdadtisdey
     2521 sdeevaeeve eaeaacpvps gavvtesqty kkradflsnd dyavyvreni qvgmmvrccr
     2581 tyeevcegdv gkvikldrdg lhdlnvqcdw qqkggtywvr yihvellgfp pqssashiki
     2641 gdkvrvkssv ttpkykwgsv thrsvgvvka fsangkdviv dfpqqshwtg llsemelvps
     2701 ihpgvtcdgc qmfpingprf kcrncddfdf cetcfktrkh ntrhtfgrin epgqspvfcg
     2761 rsgkqlkrrh ssqrgmlldd wsrivknlnv sssvnqasrl idgseqcwqs sgsqgkhwir
     2821 leifpdvlvh rlkmivdpad ssympslvvv sggnslnnli elktininpt dttvpllsdc
     2881 teyhryieia ikqcrssgid ckihglsilg riraededla avpflasdne eedddkantg
     2941 slvrkkaagl esaatirtkv fvwglndkdq lgglkgskik vpsfsetlsa lnvvqvaggs
     3001 kslfavtveg kvyacgeatn grlglgissg tvpiprqita lsnyvvkkva vhsggrhama
     3061 ltvdgkvfsw gegddgklgh fsrmncdkpr liealktkri rdiacgsshs aaitssgely
     3121 twglgeygrl ghgdnttqlk pkmvkvllgh rviqvacgsr daqtlaltde glvfswgdgd
     3181 fgklgrggse gcnipqnier lngqgvcqie cgaqfslalt ksgvvwtwgk gdyfrlghgt
     3241 dvhvrkpqvv eglrgkkivh vavgalhcla vtdtgqvyaw gdndhgqqgn gtttvnrkpt
     3301 lvqglegqki trvacgsshs vawttvdvat psvhepvlfq tardplgasy lgvpsdadss
     3361 aasnklsgan sskpnrpsla killsldgnv akqqalshil valqimyard avvgalmpas
     3421 miapvecpss spappsdats tgspangdec mlagdveerl spnpwqdrrg evvpsedavt
     3481 psavtpsaaa assrpfipvt ddpgaatiia etmtktkedv esqskvsgpe pqyldeftsl
     3541 lvpddtrvmv dllklavsnr agekgkdvls avlsgmgtay pqvadmllel cvteledvat
     3601 dsqsgrlssq pvvvesshpy tddtsssgtv kipgaeglrv efdrqcster rhdpltimdg
     3661 vnrivsvrsg rewsdwssel ripgdelkwk fisdgsvngw gwrftvypim paagpkdlls
     3721 drcilscpsm dlvtclldfr lnfasnrsiv prlaaslaac aqlsalaagh rmwalqrlrk
     3781 llttefgqsi ninrilgdnd getralsftg salaalvkgl pealqrqfdy edpivrggkq
     3841 llhspffkvl valacdleld tlpccaethk wawfrrycma srvavaldkr tplprlflde
     3901 vakkirelma dnenmdvlhe chdvfkreqd eqlvqwmnrr pddwtlsagg sgtiygwghn
     3961 hrgqlggieg akvkvptpce alatlrpvql iggeqtlfav tadgklyatg ygaggrlgig
     4021 gtesvstptl lesiqhvfik kvavnsggkh clalssegev yswgeaedgk lghgnrspcd
     4081 rprvieslrg ievvdiaagg ahsacitaag dlftwgkgry grlghgdsed qlkpklveal
     4141 qgyrvidiac gsgdaqtlcl tdddtvwswg dgdygklgrg gsdgckvpmk idsltglgvv
     4201 kvecgsqfsv altksgavyt wgkgdyhrlg hgsddhvrrp rqvqglqgkk viaiatgslh
     4261 cvcctedgev ytwgdndegq lgdgttnaiq rprlvaalqg kkinrvacgs ahtlawstsk
     4321 panagklptq vpmeynhlqe ipiislrnrl lllhhiself cpcipmfdle grldetgqgp
     4381 svgfdtlrgi lisqgkeaaf rkvvqatmvr drqhgpvvel nriqvkrsrs kgglagpdgt
     4441 ksvfgqmcak mssfspdsll lphrvwkvkf vgesvddcgg gysesiaemc eelqngltpl
     4501 livtpngrde sganrdcfll npaaksllhm nmfrflgvll giairtgspl slnlaepvwk
     4561 qlagmsltia dlsevdkdfi pglmyirdne atseefeams lpftvpnasg qdiqlsskyt
     4621 hitldnraey vrlainyrlh efdeqvaavr egmarvvpvp llslftgyel etmvcgspdi
     4681 plhllksvat ykgieptasl iqwfwevmes fsnterslfl rfvwgrtrlp rtiadfrgrd
     4741 fviqvldkyn ppdhflpesy tcffllklpr ysckqvleek lkyaihfcks idtddyaria
     4801 ltgepaadds sddsdnedad sfasdstqdy ltgh
//
LOCUS       XP_053914411             822 aa            linear   VRT 09-MAR-2023
DEFINITION  striatin-interacting protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053914411
VERSION     XP_053914411.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058436.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..822
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..822
                     /product="striatin-interacting protein 2 isoform X1"
                     /calculated_mol_wt=94631
     Region          47..>264
                     /region_name="N1221"
                     /note="N1221-like protein; pfam07923"
                     /db_xref="CDD:429737"
     Region          444..770
                     /region_name="DUF3402"
                     /note="Domain of unknown function (DUF3402); pfam11882"
                     /db_xref="CDD:463384"
     CDS             1..822
                     /gene="STRIP2"
                     /coded_by="XM_054058436.1:74..2542"
                     /db_xref="GeneID:104061375"
ORIGIN      
        1 meaaggadtg ppgphapgra rpgqtppkgr elfrsqrres egsvdcpnle feygdadchs
       61 aelaelysyt eepelssnrr cfeedfhaqv pgrrwleldv arqkayvmhl ldglevvnrd
      121 krlkvarail ylaqgvfgdc dnegdvlhws rhnsfllyql gtftaflell nmeidnsqac
      181 ssalrkpais ladstelrvl lsvmylmven irveqeadpp ewktcretfr melsfpvhne
      241 epfalllftm vtkfcsghtp hfpmkkvlll lwkvllltlg gfealqerkv rkreelglpp
      301 lpedsiqvmr smraasppty sielmeqqqq krghrsrrpl vkqdsldiyn erdpfkndea
      361 gvdeeenddv dsgiegeldl mereaivptm paqrppierv sfpkglpwap kvrqkdiehf
      421 leasrnkfig ftlgqdtetl iglprpihes vktlkqhkyv sisdiqikne eelekcpmsl
      481 geeevqetpc evlyramlyn lpqymiallk illaaaptsk aktdsinila dvlpeempit
      541 vlqsmklgid vnrhkeiivk sisaslllll khfklnhiyq feyvsqhlvf anciplilkf
      601 fnqnilsyit aknsisvldy phctvcdlpe ltaesleagd nnqfcwrnlf scinllriln
      661 kltkwkhsrt mmlvvfksap ilkralkvkq ammqlyvlkl lkiqtkylgr qwrksnmktm
      721 saiyqkvrhr mnddwaygnd idarpwdfqa eectlranie afnsrrydkp qdsefapvdn
      781 clqsvlgqrl elpedfhcsy elwlerevfs qpirweellq cq
//
LOCUS       XP_053914423             715 aa            linear   VRT 09-MAR-2023
DEFINITION  striatin-interacting protein 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053914423
VERSION     XP_053914423.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058448.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..715
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..715
                     /product="striatin-interacting protein 2 isoform X2"
                     /calculated_mol_wt=82713
     Region          <1..>157
                     /region_name="N1221"
                     /note="N1221-like protein; pfam07923"
                     /db_xref="CDD:429737"
     Region          337..663
                     /region_name="DUF3402"
                     /note="Domain of unknown function (DUF3402); pfam11882"
                     /db_xref="CDD:463384"
     CDS             1..715
                     /gene="STRIP2"
                     /coded_by="XM_054058448.1:354..2501"
                     /db_xref="GeneID:104061375"
ORIGIN      
        1 mhlldglevv nrdkrlkvar ailylaqgvf gdcdnegdvl hwsrhnsfll yqlgtftafl
       61 ellnmeidns qacssalrkp aisladstel rvllsvmylm venirveqea dppewktcre
      121 tfrmelsfpv hneepfalll ftmvtkfcsg htphfpmkkv llllwkvlll tlggfealqe
      181 rkvrkreelg lpplpedsiq vmrsmraasp ptysielmeq qqqkrghrsr rplvkqdsld
      241 iynerdpfkn deagvdeeen ddvdsgiege ldlmereaiv ptmpaqrppi ervsfpkglp
      301 wapkvrqkdi ehfleasrnk figftlgqdt etliglprpi hesvktlkqh kyvsisdiqi
      361 kneeelekcp mslgeeevqe tpcevlyram lynlpqymia llkillaaap tskaktdsin
      421 iladvlpeem pitvlqsmkl gidvnrhkei ivksisasll lllkhfklnh iyqfeyvsqh
      481 lvfancipli lkffnqnils yitaknsisv ldyphctvcd lpeltaesle agdnnqfcwr
      541 nlfscinllr ilnkltkwkh srtmmlvvfk sapilkralk vkqammqlyv lkllkiqtky
      601 lgrqwrksnm ktmsaiyqkv rhrmnddway gndidarpwd fqaeectlra nieafnsrry
      661 dkpqdsefap vdnclqsvlg qrlelpedfh csyelwlere vfsqpirwee llqcq
//
LOCUS       XP_053914436             553 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear respiratory factor 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053914436
VERSION     XP_053914436.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058461.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..553
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..553
                     /product="nuclear respiratory factor 1 isoform X1"
                     /calculated_mol_wt=59162
     Region          87..283
                     /region_name="Nrf1_DNA-bind"
                     /note="NLS-binding and DNA-binding and dimerization
                     domains of Nrf1; pfam10491"
                     /db_xref="CDD:463112"
     CDS             1..553
                     /gene="NRF1"
                     /coded_by="XM_054058461.1:101..1762"
                     /db_xref="GeneID:104061365"
ORIGIN      
        1 meehgvikte hmatieacav aqqvqqvhva tytehsmlsa dedspssped tsyddsdiln
       61 statdevtah laaagpvgma aaaavatgkk rkrphvfesn psirkrqqtr llrklratld
      121 eyttrvgqqa ivlcispskp npvfkvfgaa plenvvrkyk smiledlesa laehapapqe
      181 vnselpplti dgipvsvdkm tqaqlrafip emlkystgrg kpgwgkesck pvwwpedipw
      241 anvrsdvrte eqkqrvswtq alrtivkncy kqhgredlly afedqqtqqq tttthsiahl
      301 vpsqtvvqtf snpdgtvsli qvgtgatvat ladaselptt vtvaqvnysa vtdgeveqnw
      361 atlqggemti qttqaseatq avaslaeaav aasqemqqga tvtmalnsea aahavatlae
      421 atlqgggqiv lsgetaaavg altgvqdang kkdpneslat wqsadqlaci qadrkervel
      481 fagsshceqi flmkycpetg lvqipvsmyq tvvtslaqgn gpvqvamapv ttriadsavt
      541 mdgqavevvt leq
//
LOCUS       XP_053914444             553 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear respiratory factor 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053914444
VERSION     XP_053914444.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058469.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..553
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..553
                     /product="nuclear respiratory factor 1 isoform X1"
                     /calculated_mol_wt=59162
     Region          87..283
                     /region_name="Nrf1_DNA-bind"
                     /note="NLS-binding and DNA-binding and dimerization
                     domains of Nrf1; pfam10491"
                     /db_xref="CDD:463112"
     CDS             1..553
                     /gene="NRF1"
                     /coded_by="XM_054058469.1:3154..4815"
                     /db_xref="GeneID:104061365"
ORIGIN      
        1 meehgvikte hmatieacav aqqvqqvhva tytehsmlsa dedspssped tsyddsdiln
       61 statdevtah laaagpvgma aaaavatgkk rkrphvfesn psirkrqqtr llrklratld
      121 eyttrvgqqa ivlcispskp npvfkvfgaa plenvvrkyk smiledlesa laehapapqe
      181 vnselpplti dgipvsvdkm tqaqlrafip emlkystgrg kpgwgkesck pvwwpedipw
      241 anvrsdvrte eqkqrvswtq alrtivkncy kqhgredlly afedqqtqqq tttthsiahl
      301 vpsqtvvqtf snpdgtvsli qvgtgatvat ladaselptt vtvaqvnysa vtdgeveqnw
      361 atlqggemti qttqaseatq avaslaeaav aasqemqqga tvtmalnsea aahavatlae
      421 atlqgggqiv lsgetaaavg altgvqdang kkdpneslat wqsadqlaci qadrkervel
      481 fagsshceqi flmkycpetg lvqipvsmyq tvvtslaqgn gpvqvamapv ttriadsavt
      541 mdgqavevvt leq
//
LOCUS       XP_053914452             503 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear respiratory factor 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053914452
VERSION     XP_053914452.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058477.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..503
                     /product="nuclear respiratory factor 1 isoform X2"
                     /calculated_mol_wt=53505
     Region          87..283
                     /region_name="Nrf1_DNA-bind"
                     /note="NLS-binding and DNA-binding and dimerization
                     domains of Nrf1; pfam10491"
                     /db_xref="CDD:463112"
     CDS             1..503
                     /gene="NRF1"
                     /coded_by="XM_054058477.1:101..1612"
                     /db_xref="GeneID:104061365"
ORIGIN      
        1 meehgvikte hmatieacav aqqvqqvhva tytehsmlsa dedspssped tsyddsdiln
       61 statdevtah laaagpvgma aaaavatgkk rkrphvfesn psirkrqqtr llrklratld
      121 eyttrvgqqa ivlcispskp npvfkvfgaa plenvvrkyk smiledlesa laehapapqe
      181 vnselpplti dgipvsvdkm tqaqlrafip emlkystgrg kpgwgkesck pvwwpedipw
      241 anvrsdvrte eqkqrvswtq alrtivkncy kqhgredlly afedqqtqqq tttthsiahl
      301 vpsqtvvqtf snpdgtvsli qvgtgatvat ladaselptt vtvaqvnysa vtdgeveqnw
      361 atlqggemti qttqaseatq avaslaeaav aasqemqqga tvtmalnsea aahavatlae
      421 atlqgggqiv lsgetaaavg altgvqdang lvqipvsmyq tvvtslaqgn gpvqvamapv
      481 ttriadsavt mdgqavevvt leq
//
LOCUS       XP_053914459             183 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin-conjugating enzyme E2 H [Cuculus canorus].
ACCESSION   XP_053914459
VERSION     XP_053914459.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058484.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..183
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..183
                     /product="ubiquitin-conjugating enzyme E2 H"
                     /calculated_mol_wt=20524
     Region          9..145
                     /region_name="UBCc_UBE2H"
                     /note="Ubiquitin-conjugating enzyme E2, catalytic (UBCc)
                     domain of ubiquitin-conjugating enzyme E2 H and related
                     proteins; cd23797"
                     /db_xref="CDD:467417"
     CDS             1..183
                     /gene="UBE2H"
                     /coded_by="XM_054058484.1:185..736"
                     /db_xref="GeneID:104061374"
ORIGIN      
        1 msspspgkrr mdtdvvklie skhevtilgg lnefvvkfyg pqgtpyeggv wkvrvdlpdk
       61 ypfkspsigf mnkifhpnid easgtvcldv inqtwtalyd ltnifesflp qllaypnpid
      121 plngdaaamy lhrpeeykqk ikeyiqkyat eealkeqeeg tgdsssessm sdfsedeaqd
      181 mel
//
LOCUS       XP_053914466              76 aa            linear   VRT 09-MAR-2023
DEFINITION  small lysine-rich protein 1 [Cuculus canorus].
ACCESSION   XP_053914466
VERSION     XP_053914466.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058491.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..76
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..76
                     /product="small lysine-rich protein 1"
                     /calculated_mol_wt=8150
     CDS             1..76
                     /gene="SMKR1"
                     /coded_by="XM_054058491.1:1077..1307"
                     /db_xref="GeneID:128851222"
ORIGIN      
        1 magkskkpkh gkgnkpkhgk gkrskkkakg aaeevnilsp aamlnayyic hnasaclffr
       61 gfawpgspkk kgkkrk
//
LOCUS       XP_053914478             740 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphatidylinositol-binding clathrin assembly protein isoform X1
            [Cuculus canorus].
ACCESSION   XP_053914478
VERSION     XP_053914478.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058503.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..740
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..740
                     /product="phosphatidylinositol-binding clathrin assembly
                     protein isoform X1"
                     /calculated_mol_wt=80086
     Region          24..282
                     /region_name="ANTH"
                     /note="ANTH domain; pfam07651"
                     /db_xref="CDD:400137"
     Site            order(28,38,40..41)
                     /site_type="other"
                     /note="PtdIns(4,5)P2-binding site [chemical binding]"
                     /db_xref="CDD:340782"
     CDS             1..740
                     /gene="PICALM"
                     /coded_by="XM_054058503.1:193..2415"
                     /db_xref="GeneID:104068396"
ORIGIN      
        1 msgqsltdri taaqhsvtgs avsktvckat thevmgpkkk hldyliqctn emnvnipqla
       61 dslferttns swvvvfksli tthhlmvygn erfiqylasr ntlfnlsnfl dksglqgydm
      121 stfirrysry lnekavsyrq vafdftkvkr gadgvmrtms tekllktvpi iqnqmdalld
      181 fnvnsneltn gvinaafmll fkdairlfaa ynegiinlle kyfdmkknqc kegldiykkf
      241 ltrmtrisef lkvaeqvgid rgdipdlsqa psslldaleq hlaslegkki kdstaasrat
      301 tlsnavssla stglsltkvd erekqaalee eqarlkalke qrlkelakkp htslttvasp
      361 vstaagsimt apaidifstp sssnstsklp ndlldlqptf hpsvhpisaa pqvgstwgdp
      421 fsatvdsvdd aipnlnpflt ktndaahlsv ssdvstftsr tpthemfvdh ynsytelnpf
      481 vatkyestig lypyasdsfc gpqaypnash fcnepssvag lfggftpspv aqpqpsagln
      541 vdfesvfgnk ssnvvldsgg fdelggllkp tvasqnqslp vakvppnklv sddldsslan
      601 lvgnlgigng ttkndvnwtq pgekkltggs nwqpkiaptt awnaptlngm hfpqyappvm
      661 aypattptgm mgygmpsqmg gipvmtqptl iysqpvmrpp npfgpvpgaq lsaasspssq
      721 sphrasgkdp faelslqdfl
//
LOCUS       XP_053914487             733 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphatidylinositol-binding clathrin assembly protein isoform X2
            [Cuculus canorus].
ACCESSION   XP_053914487
VERSION     XP_053914487.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058512.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..733
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..733
                     /product="phosphatidylinositol-binding clathrin assembly
                     protein isoform X2"
                     /calculated_mol_wt=79351
     Region          24..282
                     /region_name="ANTH"
                     /note="ANTH domain; pfam07651"
                     /db_xref="CDD:400137"
     Site            order(28,38,40..41)
                     /site_type="other"
                     /note="PtdIns(4,5)P2-binding site [chemical binding]"
                     /db_xref="CDD:340782"
     CDS             1..733
                     /gene="PICALM"
                     /coded_by="XM_054058512.1:193..2394"
                     /db_xref="GeneID:104068396"
ORIGIN      
        1 msgqsltdri taaqhsvtgs avsktvckat thevmgpkkk hldyliqctn emnvnipqla
       61 dslferttns swvvvfksli tthhlmvygn erfiqylasr ntlfnlsnfl dksglqgydm
      121 stfirrysry lnekavsyrq vafdftkvkr gadgvmrtms tekllktvpi iqnqmdalld
      181 fnvnsneltn gvinaafmll fkdairlfaa ynegiinlle kyfdmkknqc kegldiykkf
      241 ltrmtrisef lkvaeqvgid rgdipdlsqa psslldaleq hlaslegkki kdstaasrat
      301 tlsnavssla stglsltkvd erekqaalee eqarlkalke qrlkelakkp htslttvasp
      361 vstaagsimt apaidifstp sssnstsklp ndlldlqptf hpsvhpisaa pqvgstwgdp
      421 fsatvdsvdd aipnlnpflt ktndaahlsv ssdvstftsr tpthemfvdh ynsytelnpf
      481 vatkyestig lypyasaypn ashfcnepss vaglfggftp spvaqpqpsa glnvdfesvf
      541 gnkssnvvld sggfdelggl lkptvasqnq slpvakvppn klvsddldss lanlvgnlgi
      601 gngttkndvn wtqpgekklt ggsnwqpkia pttawnaptl ngmhfpqyap pvmaypattp
      661 tgmmgygmps qmggipvmtq ptliysqpvm rppnpfgpvp gaqlsaassp ssqsphrasg
      721 kdpfaelslq dfl
//
LOCUS       XP_053914496             732 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphatidylinositol-binding clathrin assembly protein isoform X3
            [Cuculus canorus].
ACCESSION   XP_053914496
VERSION     XP_053914496.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058521.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..732
                     /product="phosphatidylinositol-binding clathrin assembly
                     protein isoform X3"
                     /calculated_mol_wt=79111
     Region          24..282
                     /region_name="ANTH"
                     /note="ANTH domain; pfam07651"
                     /db_xref="CDD:400137"
     Site            order(28,38,40..41)
                     /site_type="other"
                     /note="PtdIns(4,5)P2-binding site [chemical binding]"
                     /db_xref="CDD:340782"
     CDS             1..732
                     /gene="PICALM"
                     /coded_by="XM_054058521.1:193..2391"
                     /db_xref="GeneID:104068396"
ORIGIN      
        1 msgqsltdri taaqhsvtgs avsktvckat thevmgpkkk hldyliqctn emnvnipqla
       61 dslferttns swvvvfksli tthhlmvygn erfiqylasr ntlfnlsnfl dksglqgydm
      121 stfirrysry lnekavsyrq vafdftkvkr gadgvmrtms tekllktvpi iqnqmdalld
      181 fnvnsneltn gvinaafmll fkdairlfaa ynegiinlle kyfdmkknqc kegldiykkf
      241 ltrmtrisef lkvaeqvgid rgdipdlsqa psslldaleq hlaslegkki kdstaasrat
      301 tlsnavssla stglsltkvd erekqaalee eqarlkalke qrlkelakkp htslttvasp
      361 vstaagsimt apaidifstp sssnstsklp ndlldlqptf hpsvhpisaa pqvgstwgdp
      421 fsatvdsvdd aipnlnpflt ktndaahlsv ssdvstftsr tpthemfvdh ynsytelnpf
      481 vatkyestig lypyasdsfc gpqaypnash fcnepssvag lfggftpspv aqpqpsagln
      541 vdfesvfgnk ssnvvldsgg fdelggllkp tvasqnqslp vakvppnklv sddldsslan
      601 lvgnlgigng ttkndvnwtq pgekkltggs nwqpkiaptt awnaptlapp vmaypattpt
      661 gmmgygmpsq mggipvmtqp tliysqpvmr ppnpfgpvpg aqlsaassps sqsphrasgk
      721 dpfaelslqd fl
//
LOCUS       XP_053914499             714 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphatidylinositol-binding clathrin assembly protein isoform X4
            [Cuculus canorus].
ACCESSION   XP_053914499
VERSION     XP_053914499.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058524.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..714
                     /product="phosphatidylinositol-binding clathrin assembly
                     protein isoform X4"
                     /calculated_mol_wt=77492
     Region          24..282
                     /region_name="ANTH"
                     /note="ANTH domain; pfam07651"
                     /db_xref="CDD:400137"
     Site            order(28,38,40..41)
                     /site_type="other"
                     /note="PtdIns(4,5)P2-binding site [chemical binding]"
                     /db_xref="CDD:340782"
     CDS             1..714
                     /gene="PICALM"
                     /coded_by="XM_054058524.1:193..2337"
                     /db_xref="GeneID:104068396"
ORIGIN      
        1 msgqsltdri taaqhsvtgs avsktvckat thevmgpkkk hldyliqctn emnvnipqla
       61 dslferttns swvvvfksli tthhlmvygn erfiqylasr ntlfnlsnfl dksglqgydm
      121 stfirrysry lnekavsyrq vafdftkvkr gadgvmrtms tekllktvpi iqnqmdalld
      181 fnvnsneltn gvinaafmll fkdairlfaa ynegiinlle kyfdmkknqc kegldiykkf
      241 ltrmtrisef lkvaeqvgid rgdipdlsqa psslldaleq hlaslegkki kdstaasrat
      301 tlsnavssla stglsltkvd erekqaalee eqarlkalke qrlkelakkp htslttvasp
      361 vstaagsimt apaidifstp sssnstsklp ndlldlqptf hpsvhpisaa pqvgstwgdp
      421 fsatvdsvdd aipnlnpflt ktndaahlsv ssdvstftsr tpthemfvdh ynsytelnpf
      481 vatkyestig lypyasdsfc gpqaypnash fcnepssvag lfggftpspv aqpqpsagln
      541 vdfesvfgnk ssnvvldsgg fdelggllkp tvasqnqslp vakvppnklv sddldsslan
      601 lvgnlgigng ttkndvnwtq pgekkltggs nwqpkiaptt awnaptlngm hfpqyappvm
      661 aypattptgm mgygmpsqmg gipvmtqptl iysqpvmrpp npfgpvpgaq iqfm
//
LOCUS       XP_053914504             712 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphatidylinositol-binding clathrin assembly protein isoform X5
            [Cuculus canorus].
ACCESSION   XP_053914504
VERSION     XP_053914504.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058529.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..712
                     /product="phosphatidylinositol-binding clathrin assembly
                     protein isoform X5"
                     /calculated_mol_wt=76859
     Region          24..282
                     /region_name="ANTH"
                     /note="ANTH domain; pfam07651"
                     /db_xref="CDD:400137"
     Site            order(28,38,40..41)
                     /site_type="other"
                     /note="PtdIns(4,5)P2-binding site [chemical binding]"
                     /db_xref="CDD:340782"
     CDS             1..712
                     /gene="PICALM"
                     /coded_by="XM_054058529.1:193..2331"
                     /db_xref="GeneID:104068396"
ORIGIN      
        1 msgqsltdri taaqhsvtgs avsktvckat thevmgpkkk hldyliqctn emnvnipqla
       61 dslferttns swvvvfksli tthhlmvygn erfiqylasr ntlfnlsnfl dksglqgydm
      121 stfirrysry lnekavsyrq vafdftkvkr gadgvmrtms tekllktvpi iqnqmdalld
      181 fnvnsneltn gvinaafmll fkdairlfaa ynegiinlle kyfdmkknqc kegldiykkf
      241 ltrmtrisef lkvaeqvgid rgdipdlsqa psslldaleq hlaslegkki kdstaasrat
      301 tlsnavssla stglsltkvd erekqaalee eqarlkalke qrlkelakkp htslttvasp
      361 vstaagsimt apaidifstp sssnstsklp ndlldlqptf hpsvhpisaa pqvgstwgdp
      421 fsatvdsvdd aipnlnpflt ktndaahlsv ssdvstftsr tpthemfvds fcgpqaypna
      481 shfcnepssv aglfggftps pvaqpqpsag lnvdfesvfg nkssnvvlds ggfdelggll
      541 kptvasqnqs lpvakvppnk lvsddldssl anlvgnlgig ngttkndvnw tqpgekkltg
      601 gsnwqpkiap ttawnaptln gmhfpqyapp vmaypattpt gmmgygmpsq mggipvmtqp
      661 tliysqpvmr ppnpfgpvpg aqlsaassps sqsphrasgk dpfaelslqd fl
//
LOCUS       XP_053914509             662 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphatidylinositol-binding clathrin assembly protein isoform X6
            [Cuculus canorus].
ACCESSION   XP_053914509
VERSION     XP_053914509.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058534.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..662
                     /product="phosphatidylinositol-binding clathrin assembly
                     protein isoform X6"
                     /calculated_mol_wt=71481
     Region          24..282
                     /region_name="ANTH"
                     /note="ANTH domain; pfam07651"
                     /db_xref="CDD:400137"
     Site            order(28,38,40..41)
                     /site_type="other"
                     /note="PtdIns(4,5)P2-binding site [chemical binding]"
                     /db_xref="CDD:340782"
     CDS             1..662
                     /gene="PICALM"
                     /coded_by="XM_054058534.1:193..2181"
                     /db_xref="GeneID:104068396"
ORIGIN      
        1 msgqsltdri taaqhsvtgs avsktvckat thevmgpkkk hldyliqctn emnvnipqla
       61 dslferttns swvvvfksli tthhlmvygn erfiqylasr ntlfnlsnfl dksglqgydm
      121 stfirrysry lnekavsyrq vafdftkvkr gadgvmrtms tekllktvpi iqnqmdalld
      181 fnvnsneltn gvinaafmll fkdairlfaa ynegiinlle kyfdmkknqc kegldiykkf
      241 ltrmtrisef lkvaeqvgid rgdipdlsqa psslldaleq hlaslegkki kdstaasrat
      301 tlsnavssla stglsltkvd erekqaalee eqarlkalke qrlkelakkp htslttvasp
      361 vstaagsimt apaidifstp sssnstsklp ndlldlqptf hpsvhpisaa pqvgstwgds
      421 fcgpqaypna shfcnepssv aglfggftps pvaqpqpsag lnvdfesvfg nkssnvvlds
      481 ggfdelggll kptvasqnqs lpvakvppnk lvsddldssl anlvgnlgig ngttkndvnw
      541 tqpgekkltg gsnwqpkiap ttawnaptln gmhfpqyapp vmaypattpt gmmgygmpsq
      601 mggipvmtqp tliysqpvmr ppnpfgpvpg aqlsaassps sqsphrasgk dpfaelslqd
      661 fl
//
LOCUS       XP_009569563             635 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphatidylinositol-binding clathrin assembly protein isoform X7
            [Cuculus canorus].
ACCESSION   XP_009569563
VERSION     XP_009569563.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009571268.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009569563.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..635
                     /product="phosphatidylinositol-binding clathrin assembly
                     protein isoform X7"
                     /calculated_mol_wt=68696
     Region          24..282
                     /region_name="ANTH"
                     /note="ANTH domain; pfam07651"
                     /db_xref="CDD:400137"
     Site            order(28,38,40..41)
                     /site_type="other"
                     /note="PtdIns(4,5)P2-binding site [chemical binding]"
                     /db_xref="CDD:340782"
     CDS             1..635
                     /gene="PICALM"
                     /coded_by="XM_009571268.2:192..2099"
                     /db_xref="GeneID:104068396"
ORIGIN      
        1 msgqsltdri taaqhsvtgs avsktvckat thevmgpkkk hldyliqctn emnvnipqla
       61 dslferttns swvvvfksli tthhlmvygn erfiqylasr ntlfnlsnfl dksglqgydm
      121 stfirrysry lnekavsyrq vafdftkvkr gadgvmrtms tekllktvpi iqnqmdalld
      181 fnvnsneltn gvinaafmll fkdairlfaa ynegiinlle kyfdmkknqc kegldiykkf
      241 ltrmtrisef lkvaeqvgid rgdipdlsqa psslldaleq hlaslegkki kdstaasrat
      301 tlsnavssla stglsltkvd erekqaalee eqarlkalke qrlkelakkp htslttvasp
      361 vstaagsimt apaidifstp sssnstsklp ndlldlqptf hpsvhpisaa pqvgstwggf
      421 tpspvaqpqp saglnvdfes vfgnkssnvv ldsggfdelg gllkptvasq nqslpvakvp
      481 pnklvsddld sslanlvgnl gigngttknd vnwtqpgekk ltggsnwqpk iapttawnap
      541 tlngmhfpqy appvmaypat tptgmmgygm psqmggipvm tqptliysqp vmrppnpfgp
      601 vpgaqlsaas spssqsphra sgkdpfaels lqdfl
//
LOCUS       XP_053914523             627 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphatidylinositol-binding clathrin assembly protein isoform X8
            [Cuculus canorus].
ACCESSION   XP_053914523
VERSION     XP_053914523.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058548.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..627
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..627
                     /product="phosphatidylinositol-binding clathrin assembly
                     protein isoform X8"
                     /calculated_mol_wt=67720
     Region          24..282
                     /region_name="ANTH"
                     /note="ANTH domain; pfam07651"
                     /db_xref="CDD:400137"
     Site            order(28,38,40..41)
                     /site_type="other"
                     /note="PtdIns(4,5)P2-binding site [chemical binding]"
                     /db_xref="CDD:340782"
     CDS             1..627
                     /gene="PICALM"
                     /coded_by="XM_054058548.1:192..2075"
                     /db_xref="GeneID:104068396"
ORIGIN      
        1 msgqsltdri taaqhsvtgs avsktvckat thevmgpkkk hldyliqctn emnvnipqla
       61 dslferttns swvvvfksli tthhlmvygn erfiqylasr ntlfnlsnfl dksglqgydm
      121 stfirrysry lnekavsyrq vafdftkvkr gadgvmrtms tekllktvpi iqnqmdalld
      181 fnvnsneltn gvinaafmll fkdairlfaa ynegiinlle kyfdmkknqc kegldiykkf
      241 ltrmtrisef lkvaeqvgid rgdipdlsqa psslldaleq hlaslegkki kdstaasrat
      301 tlsnavssla stglsltkvd erekqaalee eqarlkalke qrlkelakkp htslttvasp
      361 vstaagsimt apaidifstp sssnstsklp ndlldlqptf hpsvhpisaa pqvgstwggf
      421 tpspvaqpqp saglnvdfes vfgnkssnvv ldsggfdelg gllkptvasq nqslpvakvp
      481 pnklvsddld sslanlvgnl gigngttknd vnwtqpgekk ltggsnwqpk iapttawnap
      541 tlappvmayp attptgmmgy gmpsqmggip vmtqptliys qpvmrppnpf gpvpgaqlsa
      601 asspssqsph rasgkdpfae lslqdfl
//
LOCUS       XP_053914532             479 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 83 [Cuculus canorus].
ACCESSION   XP_053914532
VERSION     XP_053914532.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058557.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..479
                     /product="coiled-coil domain-containing protein 83"
                     /calculated_mol_wt=55701
     Region          <51..245
                     /region_name="PTZ00341"
                     /note="Ring-infected erythrocyte surface antigen;
                     Provisional"
                     /db_xref="CDD:173534"
     CDS             1..479
                     /gene="CCDC83"
                     /coded_by="XM_054058557.1:51..1490"
                     /db_xref="GeneID:104068404"
ORIGIN      
        1 meekkkeekp eeqlredeld lpesllefev etkeeaiarv lfhlkqmeek nkeyrkrnel
       61 mqkqqeahir silrhinqek rqdekeaitg dyveeslkkm wqyvkeneql veelhsqvee
      121 taqglsvkqs erdclleykn vgskiqldri mnlekdikev kdefqrvtey ysnalkalke
      181 endrevercv elnkeqalen avryldkysr qeieanewlk evvkmhqkkv nelkasvqll
      241 eeeniglvtk lidsrlqnlr vprhlfltqa adpqdefpkd eikeaeykdh eakadgdesl
      301 rsadvpcqkn kafgkiqsks enekpqdsde elqeesftps lnsllcllya dekdfqeylk
      361 ldpletqllc vigrampihe epgemscrsh regditgksn gritaemika ldkqkdsqlg
      421 fnldpalqcq mkwkgsphys dsltnpgtpp itptsclvdh tgnpfkkltl mktlhknvs
//
LOCUS       XP_053914543             508 aa            linear   VRT 09-MAR-2023
DEFINITION  adenosylhomocysteinase 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053914543
VERSION     XP_053914543.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058568.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..508
                     /product="adenosylhomocysteinase 3 isoform X1"
                     /calculated_mol_wt=56783
     Region          84..507
                     /region_name="AdoHcyase"
                     /note="S-adenosyl-L-homocysteine hydrolase; smart00996"
                     /db_xref="CDD:214963"
     Site            order(93,96,100,103..104,238,241..242,258,260,264..265,
                     269,272..273,277,280..281,284..290,298..299,302,311..312,
                     314,319..327,329..332,334..337,340,353..357,367..369,380,
                     397..398,403,427,429,431..432,435,461,467..468,471..472,
                     475,478..479,481..483,485,488..489,492..493)
                     /site_type="other"
                     /note="homotetramer interface [polypeptide binding]"
                     /db_xref="CDD:240619"
     Site            order(131,133,135..136,207,232..233,262,266,423,428,433,
                     437)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:240619"
     Site            order(233..235,267,271,296,298..300,318..321,324,351..354,
                     357,375..377,420,422,428)
                     /site_type="other"
                     /note="NAD binding site [chemical binding]"
                     /db_xref="CDD:240619"
     CDS             1..508
                     /gene="AHCYL2"
                     /coded_by="XM_054058568.1:451..1977"
                     /db_xref="GeneID:104061376"
ORIGIN      
        1 mekwdsntsa safhvpewmi qfadqkqefn krptkigrrs lsrsisqsst dsyssaasyt
       61 dssddetspr dkqqknskgs sdfcvknikq aefgrreiei aeqempalma lrkraqgekp
      121 lagakivgct hitaqtavlm etlgalgaqc rwaacniyst lnevaaalae sgfpvfawkg
      181 eseddfwwci drcvnvegwq pnmilddggd lthwiykkyp nmfkkikgiv eesvtgvhrl
      241 yqlskagklc vpamnvndsv tkqkfdnlyc cresildglk rttdmmfggk qvvvcgygev
      301 gkgccaalka mgsivyvtei dpicalqacm dgfrlvklne virqvdivit ctgnknvvtr
      361 ehldrmknsc ivcnmghsnt eidvaslrtp eltwervrsq vdhviwpdgk rivllaegrl
      421 lnlscstvpt fvlsitattq alalielyna pegrykqdvy llpkkmdeyv aslhlptfda
      481 hlteltdeqa kylglnkngp fkpnyyry
//
LOCUS       XP_053914553             507 aa            linear   VRT 09-MAR-2023
DEFINITION  adenosylhomocysteinase 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053914553
VERSION     XP_053914553.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058578.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..507
                     /product="adenosylhomocysteinase 3 isoform X2"
                     /calculated_mol_wt=56540
     Region          83..506
                     /region_name="AdoHcyase"
                     /note="S-adenosyl-L-homocysteine hydrolase; smart00996"
                     /db_xref="CDD:214963"
     Site            order(92,95,99,102..103,237,240..241,257,259,263..264,268,
                     271..272,276,279..280,283..289,297..298,301,310..311,313,
                     318..326,328..331,333..336,339,352..356,366..368,379,
                     396..397,402,426,428,430..431,434,460,466..467,470..471,
                     474,477..478,480..482,484,487..488,491..492)
                     /site_type="other"
                     /note="homotetramer interface [polypeptide binding]"
                     /db_xref="CDD:240619"
     Site            order(130,132,134..135,206,231..232,261,265,422,427,432,
                     436)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:240619"
     Site            order(232..234,266,270,295,297..299,317..320,323,350..353,
                     356,374..376,419,421,427)
                     /site_type="other"
                     /note="NAD binding site [chemical binding]"
                     /db_xref="CDD:240619"
     CDS             1..507
                     /gene="AHCYL2"
                     /coded_by="XM_054058578.1:103..1626"
                     /db_xref="GeneID:104061376"
ORIGIN      
        1 mpnkkkynvn gdsgmkaqiq fadqkqefnk rptkigrrsl srsisqsstd syssaasytd
       61 ssddetsprd kqqknskgss dfcvknikqa efgrreieia eqempalmal rkraqgekpl
      121 agakivgcth itaqtavlme tlgalgaqcr waacniystl nevaaalaes gfpvfawkge
      181 seddfwwcid rcvnvegwqp nmilddggdl thwiykkypn mfkkikgive esvtgvhrly
      241 qlskagklcv pamnvndsvt kqkfdnlycc resildglkr ttdmmfggkq vvvcgygevg
      301 kgccaalkam gsivyvteid picalqacmd gfrlvklnev irqvdivitc tgnknvvtre
      361 hldrmknsci vcnmghsnte idvaslrtpe ltwervrsqv dhviwpdgkr ivllaegrll
      421 nlscstvptf vlsitattqa lalielynap egrykqdvyl lpkkmdeyva slhlptfdah
      481 lteltdeqak ylglnkngpf kpnyyry
//
LOCUS       XP_053914563             493 aa            linear   VRT 09-MAR-2023
DEFINITION  adenosylhomocysteinase 3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053914563
VERSION     XP_053914563.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058588.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..493
                     /product="adenosylhomocysteinase 3 isoform X3"
                     /calculated_mol_wt=55005
     Region          69..492
                     /region_name="AdoHcyase"
                     /note="S-adenosyl-L-homocysteine hydrolase; smart00996"
                     /db_xref="CDD:214963"
     Site            order(78,81,85,88..89,223,226..227,243,245,249..250,254,
                     257..258,262,265..266,269..275,283..284,287,296..297,299,
                     304..312,314..317,319..322,325,338..342,352..354,365,
                     382..383,388,412,414,416..417,420,446,452..453,456..457,
                     460,463..464,466..468,470,473..474,477..478)
                     /site_type="other"
                     /note="homotetramer interface [polypeptide binding]"
                     /db_xref="CDD:240619"
     Site            order(116,118,120..121,192,217..218,247,251,408,413,418,
                     422)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:240619"
     Site            order(218..220,252,256,281,283..285,303..306,309,336..339,
                     342,360..362,405,407,413)
                     /site_type="other"
                     /note="NAD binding site [chemical binding]"
                     /db_xref="CDD:240619"
     CDS             1..493
                     /gene="AHCYL2"
                     /coded_by="XM_054058588.1:12..1493"
                     /db_xref="GeneID:104061376"
ORIGIN      
        1 mgiriqfadq kqefnkrptk igrrslsrsi sqsstdsyss aasytdssdd etsprdkqqk
       61 nskgssdfcv knikqaefgr reieiaeqem palmalrkra qgekplagak ivgcthitaq
      121 tavlmetlga lgaqcrwaac niystlneva aalaesgfpv fawkgesedd fwwcidrcvn
      181 vegwqpnmil ddggdlthwi ykkypnmfkk ikgiveesvt gvhrlyqlsk agklcvpamn
      241 vndsvtkqkf dnlyccresi ldglkrttdm mfggkqvvvc gygevgkgcc aalkamgsiv
      301 yvteidpica lqacmdgfrl vklnevirqv divitctgnk nvvtrehldr mknscivcnm
      361 ghsnteidva slrtpeltwe rvrsqvdhvi wpdgkrivll aegrllnlsc stvptfvlsi
      421 tattqalali elynapegry kqdvyllpkk mdeyvaslhl ptfdahltel tdeqakylgl
      481 nkngpfkpny yry
//
LOCUS       XP_053914576            1353 aa            linear   VRT 09-MAR-2023
DEFINITION  spermatogenesis-associated protein 13 isoform X1 [Cuculus canorus].
ACCESSION   XP_053914576
VERSION     XP_053914576.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058601.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1353
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1353
                     /product="spermatogenesis-associated protein 13 isoform
                     X1"
                     /calculated_mol_wt=152626
     Region          833..904
                     /region_name="SH3_ASEF"
                     /note="Src homology 3 domain of APC-Stimulated guanine
                     nucleotide Exchange Factor; cd11973"
                     /db_xref="CDD:212906"
     Site            order(833..842,844..845,877,880..881,894,904)
                     /site_type="other"
                     /note="APC binding site [polypeptide binding]"
                     /db_xref="CDD:212906"
     Site            order(852..854,859..860,862,890,898,901,903..904)
                     /site_type="other"
                     /note="DH-PH interface [polypeptide binding]"
                     /db_xref="CDD:212906"
     Site            order(855,857,860,864,882..883,896,898..899)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212906"
     Region          943..1122
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; smart00325"
                     /db_xref="CDD:214619"
     Site            order(946,950,1045,1072..1073,1076..1077,1079..1080,
                     1083..1084,1087..1088,1091,1117,1121)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          1127..1265
                     /region_name="PH_Collybistin_ASEF"
                     /note="Collybistin/APC-stimulated guanine nucleotide
                     exchange factor pleckstrin homology (PH) domain; cd01224"
                     /db_xref="CDD:269931"
     CDS             1..1353
                     /gene="SPATA13"
                     /coded_by="XM_054058601.1:106..4167"
                     /db_xref="GeneID:104064153"
ORIGIN      
        1 mfrvtfnvmt ekvtftlaac psitwkavqp eevsspsrce sntnrgaade egaarsadgd
       61 ssvalsypsl hlhaysvesm ttfpngcgng ttvtcivmdn keppsqtncv shnggystsn
      121 sheeeipedk lspskimrff ttprkranss sdrphslvlm gnsstwnals sirkmgsfkk
      181 lkssvlqgiq arecsdilne ndvgkhgsng avmqvqtnry sytgplhdfq navdglasdc
      241 sdaeesdesf lrnthrsrsi rraygagrin lldmdrvqsh hnctrptspv ivepkiceil
      301 vkdsennrii yrrskssdnl nflkkssfkr kstsnltelk aanekevptr tvsinsadsd
      361 kisgnperrs krwkspirak dfdrvlklvs nvtdvawkkd gskstepsps eqsqrirsns
      421 rlhddysrrv ssstdhdrkr cispvsspds slpgtpclqc pavaqdkeak mnvtvaedes
      481 lrtssgipds gslsptltdi spfpnevfys dldepkatqq ftceaenhhv ppvrpttpkp
      541 qsptaekikc nmgfqcpdhh stlslssses edraevpgpk lgrnpvcfqd svqtmyyddg
      601 nedsgisshs qlslnlasga eekkeevvsd dhwkrspsqd eekadtqkvt prrwgsgkrs
      661 rprplsdygq msirsfsipe davavesqka dctdgenqag lasigsviqs ntvgchrgrk
      721 rrpisviggv nfygsgpaee ieglltqpvt rppvpahqvp pykavsarfr pltfsqstpi
      781 gldrvgrrrq mrtsnvaadg gtessalvdd ngseedysye elcqatpryl qpggeqlain
      841 elisdgsivy aealwdhvtm ddqelgfkag dvirvleasn kdwwwgrned keawfpasfv
      901 rlrvnqeevp encssiqdee qdadmskhrq kiaenkdqmr tnviqeimnt ervyikhlkd
      961 icegyirqcr khtgmftaaq lntifgnied iykfqrkflk dlekqynkee phlseigscf
     1021 lqhqegfaiy seycnnhpsa cielsklmkq gkyrhffeac rllqqmidia idgflltpvq
     1081 kickyplqla ellkyttqeh sdynnikaay eamknvacli nerkrrlesi dkiarwqvsi
     1141 vdwegpdvla rsselihsge ltkilkqgks qqrtfflfdh qlvfckkdll rrdilyykdr
     1201 idmddmeivd tedgrdkdfn invknafkii nrateeihlf cakkqedkkr wmeaceserr
     1261 rvwedkemgm eisenqkkqa mqnarksrhg kikgvsyngc pmppphqslh pihqrhitvp
     1321 tsipqqqvfa laepkrkpsl fwhtfnkltp fkk
//
LOCUS       XP_053914582            1274 aa            linear   VRT 09-MAR-2023
DEFINITION  spermatogenesis-associated protein 13 isoform X2 [Cuculus canorus].
ACCESSION   XP_053914582
VERSION     XP_053914582.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058607.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1274
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1274
                     /product="spermatogenesis-associated protein 13 isoform
                     X2"
                     /calculated_mol_wt=144146
     Region          754..825
                     /region_name="SH3_ASEF"
                     /note="Src homology 3 domain of APC-Stimulated guanine
                     nucleotide Exchange Factor; cd11973"
                     /db_xref="CDD:212906"
     Site            order(754..763,765..766,798,801..802,815,825)
                     /site_type="other"
                     /note="APC binding site [polypeptide binding]"
                     /db_xref="CDD:212906"
     Site            order(773..775,780..781,783,811,819,822,824..825)
                     /site_type="other"
                     /note="DH-PH interface [polypeptide binding]"
                     /db_xref="CDD:212906"
     Site            order(776,778,781,785,803..804,817,819..820)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212906"
     Region          864..1043
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; smart00325"
                     /db_xref="CDD:214619"
     Site            order(867,871,966,993..994,997..998,1000..1001,1004..1005,
                     1008..1009,1012,1038,1042)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          1048..1186
                     /region_name="PH_Collybistin_ASEF"
                     /note="Collybistin/APC-stimulated guanine nucleotide
                     exchange factor pleckstrin homology (PH) domain; cd01224"
                     /db_xref="CDD:269931"
     CDS             1..1274
                     /gene="SPATA13"
                     /coded_by="XM_054058607.1:232..4056"
                     /db_xref="GeneID:104064153"
ORIGIN      
        1 mttfpngcgn gttvtcivmd nkeppsqtnc vshnggysts nsheeeiped klspskimrf
       61 fttprkrans ssdrphslvl mgnsstwnal ssirkmgsfk klkssvlqgi qarecsdiln
      121 endvgkhgsn gavmqvqtnr ysytgplhdf qnavdglasd csdaeesdes flrnthrsrs
      181 irraygagri nlldmdrvqs hhnctrptsp vivepkicei lvkdsennri iyrrskssdn
      241 lnflkkssfk rkstsnltel kaanekevpt rtvsinsads dkisgnperr skrwkspira
      301 kdfdrvlklv snvtdvawkk dgskstepsp seqsqrirsn srlhddysrr vssstdhdrk
      361 rcispvsspd sslpgtpclq cpavaqdkea kmnvtvaede slrtssgipd sgslsptltd
      421 ispfpnevfy sdldepkatq qftceaenhh vppvrpttpk pqsptaekik cnmgfqcpdh
      481 hstlslssse sedraevpgp klgrnpvcfq dsvqtmyydd gnedsgissh sqlslnlasg
      541 aeekkeevvs ddhwkrspsq deekadtqkv tprrwgsgkr srprplsdyg qmsirsfsip
      601 edavavesqk adctdgenqa glasigsviq sntvgchrgr krrpisvigg vnfygsgpae
      661 eieglltqpv trppvpahqv ppykavsarf rpltfsqstp igldrvgrrr qmrtsnvaad
      721 ggtessalvd dngseedysy eelcqatpry lqpggeqlai nelisdgsiv yaealwdhvt
      781 mddqelgfka gdvirvleas nkdwwwgrne dkeawfpasf vrlrvnqeev pencssiqde
      841 eqdadmskhr qkiaenkdqm rtnviqeimn tervyikhlk dicegyirqc rkhtgmftaa
      901 qlntifgnie diykfqrkfl kdlekqynke ephlseigsc flqhqegfai yseycnnhps
      961 acielsklmk qgkyrhffea crllqqmidi aidgflltpv qkickyplql aellkyttqe
     1021 hsdynnikaa yeamknvacl inerkrrles idkiarwqvs ivdwegpdvl arsselihsg
     1081 eltkilkqgk sqqrtfflfd hqlvfckkdl lrrdilyykd ridmddmeiv dtedgrdkdf
     1141 ninvknafki inrateeihl fcakkqedkk rwmeaceser rrvwedkemg meisenqkkq
     1201 amqnarksrh gkikgvsyng cpmppphqsl hpihqrhitv ptsipqqqvf alaepkrkps
     1261 lfwhtfnklt pfkk
//
LOCUS       XP_053914592            1274 aa            linear   VRT 09-MAR-2023
DEFINITION  spermatogenesis-associated protein 13 isoform X2 [Cuculus canorus].
ACCESSION   XP_053914592
VERSION     XP_053914592.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058617.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1274
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1274
                     /product="spermatogenesis-associated protein 13 isoform
                     X2"
                     /calculated_mol_wt=144146
     Region          754..825
                     /region_name="SH3_ASEF"
                     /note="Src homology 3 domain of APC-Stimulated guanine
                     nucleotide Exchange Factor; cd11973"
                     /db_xref="CDD:212906"
     Site            order(754..763,765..766,798,801..802,815,825)
                     /site_type="other"
                     /note="APC binding site [polypeptide binding]"
                     /db_xref="CDD:212906"
     Site            order(773..775,780..781,783,811,819,822,824..825)
                     /site_type="other"
                     /note="DH-PH interface [polypeptide binding]"
                     /db_xref="CDD:212906"
     Site            order(776,778,781,785,803..804,817,819..820)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212906"
     Region          864..1043
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; smart00325"
                     /db_xref="CDD:214619"
     Site            order(867,871,966,993..994,997..998,1000..1001,1004..1005,
                     1008..1009,1012,1038,1042)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          1048..1186
                     /region_name="PH_Collybistin_ASEF"
                     /note="Collybistin/APC-stimulated guanine nucleotide
                     exchange factor pleckstrin homology (PH) domain; cd01224"
                     /db_xref="CDD:269931"
     CDS             1..1274
                     /gene="SPATA13"
                     /coded_by="XM_054058617.1:196..4020"
                     /db_xref="GeneID:104064153"
ORIGIN      
        1 mttfpngcgn gttvtcivmd nkeppsqtnc vshnggysts nsheeeiped klspskimrf
       61 fttprkrans ssdrphslvl mgnsstwnal ssirkmgsfk klkssvlqgi qarecsdiln
      121 endvgkhgsn gavmqvqtnr ysytgplhdf qnavdglasd csdaeesdes flrnthrsrs
      181 irraygagri nlldmdrvqs hhnctrptsp vivepkicei lvkdsennri iyrrskssdn
      241 lnflkkssfk rkstsnltel kaanekevpt rtvsinsads dkisgnperr skrwkspira
      301 kdfdrvlklv snvtdvawkk dgskstepsp seqsqrirsn srlhddysrr vssstdhdrk
      361 rcispvsspd sslpgtpclq cpavaqdkea kmnvtvaede slrtssgipd sgslsptltd
      421 ispfpnevfy sdldepkatq qftceaenhh vppvrpttpk pqsptaekik cnmgfqcpdh
      481 hstlslssse sedraevpgp klgrnpvcfq dsvqtmyydd gnedsgissh sqlslnlasg
      541 aeekkeevvs ddhwkrspsq deekadtqkv tprrwgsgkr srprplsdyg qmsirsfsip
      601 edavavesqk adctdgenqa glasigsviq sntvgchrgr krrpisvigg vnfygsgpae
      661 eieglltqpv trppvpahqv ppykavsarf rpltfsqstp igldrvgrrr qmrtsnvaad
      721 ggtessalvd dngseedysy eelcqatpry lqpggeqlai nelisdgsiv yaealwdhvt
      781 mddqelgfka gdvirvleas nkdwwwgrne dkeawfpasf vrlrvnqeev pencssiqde
      841 eqdadmskhr qkiaenkdqm rtnviqeimn tervyikhlk dicegyirqc rkhtgmftaa
      901 qlntifgnie diykfqrkfl kdlekqynke ephlseigsc flqhqegfai yseycnnhps
      961 acielsklmk qgkyrhffea crllqqmidi aidgflltpv qkickyplql aellkyttqe
     1021 hsdynnikaa yeamknvacl inerkrrles idkiarwqvs ivdwegpdvl arsselihsg
     1081 eltkilkqgk sqqrtfflfd hqlvfckkdl lrrdilyykd ridmddmeiv dtedgrdkdf
     1141 ninvknafki inrateeihl fcakkqedkk rwmeaceser rrvwedkemg meisenqkkq
     1201 amqnarksrh gkikgvsyng cpmppphqsl hpihqrhitv ptsipqqqvf alaepkrkps
     1261 lfwhtfnklt pfkk
//
LOCUS       XP_053914603            1274 aa            linear   VRT 09-MAR-2023
DEFINITION  spermatogenesis-associated protein 13 isoform X2 [Cuculus canorus].
ACCESSION   XP_053914603
VERSION     XP_053914603.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058628.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1274
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1274
                     /product="spermatogenesis-associated protein 13 isoform
                     X2"
                     /calculated_mol_wt=144146
     Region          754..825
                     /region_name="SH3_ASEF"
                     /note="Src homology 3 domain of APC-Stimulated guanine
                     nucleotide Exchange Factor; cd11973"
                     /db_xref="CDD:212906"
     Site            order(754..763,765..766,798,801..802,815,825)
                     /site_type="other"
                     /note="APC binding site [polypeptide binding]"
                     /db_xref="CDD:212906"
     Site            order(773..775,780..781,783,811,819,822,824..825)
                     /site_type="other"
                     /note="DH-PH interface [polypeptide binding]"
                     /db_xref="CDD:212906"
     Site            order(776,778,781,785,803..804,817,819..820)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212906"
     Region          864..1043
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; smart00325"
                     /db_xref="CDD:214619"
     Site            order(867,871,966,993..994,997..998,1000..1001,1004..1005,
                     1008..1009,1012,1038,1042)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          1048..1186
                     /region_name="PH_Collybistin_ASEF"
                     /note="Collybistin/APC-stimulated guanine nucleotide
                     exchange factor pleckstrin homology (PH) domain; cd01224"
                     /db_xref="CDD:269931"
     CDS             1..1274
                     /gene="SPATA13"
                     /coded_by="XM_054058628.1:344..4168"
                     /db_xref="GeneID:104064153"
ORIGIN      
        1 mttfpngcgn gttvtcivmd nkeppsqtnc vshnggysts nsheeeiped klspskimrf
       61 fttprkrans ssdrphslvl mgnsstwnal ssirkmgsfk klkssvlqgi qarecsdiln
      121 endvgkhgsn gavmqvqtnr ysytgplhdf qnavdglasd csdaeesdes flrnthrsrs
      181 irraygagri nlldmdrvqs hhnctrptsp vivepkicei lvkdsennri iyrrskssdn
      241 lnflkkssfk rkstsnltel kaanekevpt rtvsinsads dkisgnperr skrwkspira
      301 kdfdrvlklv snvtdvawkk dgskstepsp seqsqrirsn srlhddysrr vssstdhdrk
      361 rcispvsspd sslpgtpclq cpavaqdkea kmnvtvaede slrtssgipd sgslsptltd
      421 ispfpnevfy sdldepkatq qftceaenhh vppvrpttpk pqsptaekik cnmgfqcpdh
      481 hstlslssse sedraevpgp klgrnpvcfq dsvqtmyydd gnedsgissh sqlslnlasg
      541 aeekkeevvs ddhwkrspsq deekadtqkv tprrwgsgkr srprplsdyg qmsirsfsip
      601 edavavesqk adctdgenqa glasigsviq sntvgchrgr krrpisvigg vnfygsgpae
      661 eieglltqpv trppvpahqv ppykavsarf rpltfsqstp igldrvgrrr qmrtsnvaad
      721 ggtessalvd dngseedysy eelcqatpry lqpggeqlai nelisdgsiv yaealwdhvt
      781 mddqelgfka gdvirvleas nkdwwwgrne dkeawfpasf vrlrvnqeev pencssiqde
      841 eqdadmskhr qkiaenkdqm rtnviqeimn tervyikhlk dicegyirqc rkhtgmftaa
      901 qlntifgnie diykfqrkfl kdlekqynke ephlseigsc flqhqegfai yseycnnhps
      961 acielsklmk qgkyrhffea crllqqmidi aidgflltpv qkickyplql aellkyttqe
     1021 hsdynnikaa yeamknvacl inerkrrles idkiarwqvs ivdwegpdvl arsselihsg
     1081 eltkilkqgk sqqrtfflfd hqlvfckkdl lrrdilyykd ridmddmeiv dtedgrdkdf
     1141 ninvknafki inrateeihl fcakkqedkk rwmeaceser rrvwedkemg meisenqkkq
     1201 amqnarksrh gkikgvsyng cpmppphqsl hpihqrhitv ptsipqqqvf alaepkrkps
     1261 lfwhtfnklt pfkk
//
LOCUS       XP_053914611            1232 aa            linear   VRT 09-MAR-2023
DEFINITION  spermatogenesis-associated protein 13 isoform X3 [Cuculus canorus].
ACCESSION   XP_053914611
VERSION     XP_053914611.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058636.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1232
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1232
                     /product="spermatogenesis-associated protein 13 isoform
                     X3"
                     /calculated_mol_wt=139473
     Region          712..783
                     /region_name="SH3_ASEF"
                     /note="Src homology 3 domain of APC-Stimulated guanine
                     nucleotide Exchange Factor; cd11973"
                     /db_xref="CDD:212906"
     Site            order(712..721,723..724,756,759..760,773,783)
                     /site_type="other"
                     /note="APC binding site [polypeptide binding]"
                     /db_xref="CDD:212906"
     Site            order(731..733,738..739,741,769,777,780,782..783)
                     /site_type="other"
                     /note="DH-PH interface [polypeptide binding]"
                     /db_xref="CDD:212906"
     Site            order(734,736,739,743,761..762,775,777..778)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212906"
     Region          822..1001
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; smart00325"
                     /db_xref="CDD:214619"
     Site            order(825,829,924,951..952,955..956,958..959,962..963,
                     966..967,970,996,1000)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          1006..1144
                     /region_name="PH_Collybistin_ASEF"
                     /note="Collybistin/APC-stimulated guanine nucleotide
                     exchange factor pleckstrin homology (PH) domain; cd01224"
                     /db_xref="CDD:269931"
     CDS             1..1232
                     /gene="SPATA13"
                     /coded_by="XM_054058636.1:199..3897"
                     /db_xref="GeneID:104064153"
ORIGIN      
        1 mfrvtfnvmt ekvtftlaac psitwkavqp eevsspsrce sntnrgaade egaarsadgd
       61 ssvalsypsl hlhaysvesm ttfpngcgng ttvtcivmdn keppsqtncv shnggystsn
      121 sheeeipedk lspskimrff ttprkranss sdrphslvlm gnsstwnals sirkmgsfkk
      181 lkssvlqgiq arecsdilne ndvgkhgsng avmqvqtnry sytgplhdfq navdglasdc
      241 sdaeesdesf lrnthrsrsi rraygagrin lldmdrvqsh hnctrptspv ivepkiceil
      301 vkdsennrii yrrskssdnl nflkkssfkr kstsnltelk aanekevptr tvsinsadsd
      361 kisgnperrs krwkspirak dfdrvlklvs nvtdvawkkd gskstepsps eqsqrirsns
      421 rlhddysrrv ssstdhdrkr cispvsspds slpgtpclqc pavaqdkeak mnvtvaedes
      481 lrtssgipds gslsptltdi spfpnevfys dldepkatqq ftceaenhhv ppvrpttpkp
      541 qsptaekikc nmgfqcpdhh stlslssses edraevpgpk lgrnpvcfqd svqtmyyddg
      601 nedsgisshs qlslnlasga eekkeepvtr ppvpahqvpp ykavsarfrp ltfsqstpig
      661 ldrvgrrrqm rtsnvaadgg tessalvddn gseedysyee lcqatprylq pggeqlaine
      721 lisdgsivya ealwdhvtmd dqelgfkagd virvleasnk dwwwgrnedk eawfpasfvr
      781 lrvnqeevpe ncssiqdeeq dadmskhrqk iaenkdqmrt nviqeimnte rvyikhlkdi
      841 cegyirqcrk htgmftaaql ntifgniedi ykfqrkflkd lekqynkeep hlseigscfl
      901 qhqegfaiys eycnnhpsac ielsklmkqg kyrhffeacr llqqmidiai dgflltpvqk
      961 ickyplqlae llkyttqehs dynnikaaye amknvaclin erkrrlesid kiarwqvsiv
     1021 dwegpdvlar sselihsgel tkilkqgksq qrtfflfdhq lvfckkdllr rdilyykdri
     1081 dmddmeivdt edgrdkdfni nvknafkiin rateeihlfc akkqedkkrw meaceserrr
     1141 vwedkemgme isenqkkqam qnarksrhgk ikgvsyngcp mppphqslhp ihqrhitvpt
     1201 sipqqqvfal aepkrkpslf whtfnkltpf kk
//
LOCUS       XP_053914622             793 aa            linear   VRT 09-MAR-2023
DEFINITION  spermatogenesis-associated protein 13 isoform X4 [Cuculus canorus].
ACCESSION   XP_053914622
VERSION     XP_053914622.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058647.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..793
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..793
                     /product="spermatogenesis-associated protein 13 isoform
                     X4"
                     /calculated_mol_wt=90716
     Region          273..344
                     /region_name="SH3_ASEF"
                     /note="Src homology 3 domain of APC-Stimulated guanine
                     nucleotide Exchange Factor; cd11973"
                     /db_xref="CDD:212906"
     Site            order(273..282,284..285,317,320..321,334,344)
                     /site_type="other"
                     /note="APC binding site [polypeptide binding]"
                     /db_xref="CDD:212906"
     Site            order(292..294,299..300,302,330,338,341,343..344)
                     /site_type="other"
                     /note="DH-PH interface [polypeptide binding]"
                     /db_xref="CDD:212906"
     Site            order(295,297,300,304,322..323,336,338..339)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212906"
     Region          383..562
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; smart00325"
                     /db_xref="CDD:214619"
     Site            order(386,390,485,512..513,516..517,519..520,523..524,
                     527..528,531,557,561)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          567..705
                     /region_name="PH_Collybistin_ASEF"
                     /note="Collybistin/APC-stimulated guanine nucleotide
                     exchange factor pleckstrin homology (PH) domain; cd01224"
                     /db_xref="CDD:269931"
     CDS             1..793
                     /gene="SPATA13"
                     /coded_by="XM_054058647.1:16..2397"
                     /db_xref="GeneID:104064153"
ORIGIN      
        1 mtcdvsfpqs kstgswdglc ltgytesvlt fvaltdkslq nkgmtlvssf lshcicgdpl
       61 pvsdsevvsd dhwkrspsqd eekadtqkvt prrwgsgkrs rprplsdygq msirsfsipe
      121 davavesqka dctdgenqag lasigsviqs ntvgchrgrk rrpisviggv nfygsgpaee
      181 ieglltqpvt rppvpahqvp pykavsarfr pltfsqstpi gldrvgrrrq mrtsnvaadg
      241 gtessalvdd ngseedysye elcqatpryl qpggeqlain elisdgsivy aealwdhvtm
      301 ddqelgfkag dvirvleasn kdwwwgrned keawfpasfv rlrvnqeevp encssiqdee
      361 qdadmskhrq kiaenkdqmr tnviqeimnt ervyikhlkd icegyirqcr khtgmftaaq
      421 lntifgnied iykfqrkflk dlekqynkee phlseigscf lqhqegfaiy seycnnhpsa
      481 cielsklmkq gkyrhffeac rllqqmidia idgflltpvq kickyplqla ellkyttqeh
      541 sdynnikaay eamknvacli nerkrrlesi dkiarwqvsi vdwegpdvla rsselihsge
      601 ltkilkqgks qqrtfflfdh qlvfckkdll rrdilyykdr idmddmeivd tedgrdkdfn
      661 invknafkii nrateeihlf cakkqedkkr wmeaceserr rvwedkemgm eisenqkkqa
      721 mqnarksrhg kikgvsyngc pmppphqslh pihqrhitvp tsipqqqvfa laepkrkpsl
      781 fwhtfnkltp fkk
//
LOCUS       XP_053914631             576 aa            linear   VRT 09-MAR-2023
DEFINITION  spermatogenesis-associated protein 13 isoform X5 [Cuculus canorus].
ACCESSION   XP_053914631
VERSION     XP_053914631.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058656.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..576
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..576
                     /product="spermatogenesis-associated protein 13 isoform
                     X5"
                     /calculated_mol_wt=67188
     Region          56..127
                     /region_name="SH3_ASEF"
                     /note="Src homology 3 domain of APC-Stimulated guanine
                     nucleotide Exchange Factor; cd11973"
                     /db_xref="CDD:212906"
     Site            order(56..65,67..68,100,103..104,117,127)
                     /site_type="other"
                     /note="APC binding site [polypeptide binding]"
                     /db_xref="CDD:212906"
     Site            order(75..77,82..83,85,113,121,124,126..127)
                     /site_type="other"
                     /note="DH-PH interface [polypeptide binding]"
                     /db_xref="CDD:212906"
     Site            order(78,80,83,87,105..106,119,121..122)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212906"
     Region          166..345
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; smart00325"
                     /db_xref="CDD:214619"
     Site            order(169,173,268,295..296,299..300,302..303,306..307,
                     310..311,314,340,344)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          350..488
                     /region_name="PH_Collybistin_ASEF"
                     /note="Collybistin/APC-stimulated guanine nucleotide
                     exchange factor pleckstrin homology (PH) domain; cd01224"
                     /db_xref="CDD:269931"
     CDS             1..576
                     /gene="SPATA13"
                     /coded_by="XM_054058656.1:240..1970"
                     /db_xref="GeneID:104064153"
ORIGIN      
        1 mvarggmarf wsleslqmva adggtessal vddngseedy syeelcqatp rylqpggeql
       61 ainelisdgs ivyaealwdh vtmddqelgf kagdvirvle asnkdwwwgr nedkeawfpa
      121 sfvrlrvnqe evpencssiq deeqdadmsk hrqkiaenkd qmrtnviqei mntervyikh
      181 lkdicegyir qcrkhtgmft aaqlntifgn iediykfqrk flkdlekqyn keephlseig
      241 scflqhqegf aiyseycnnh psacielskl mkqgkyrhff eacrllqqmi diaidgfllt
      301 pvqkickypl qlaellkytt qehsdynnik aayeamknva clinerkrrl esidkiarwq
      361 vsivdwegpd vlarsselih sgeltkilkq gksqqrtffl fdhqlvfckk dllrrdilyy
      421 kdridmddme ivdtedgrdk dfninvknaf kiinrateei hlfcakkqed kkrwmeaces
      481 errrvwedke mgmeisenqk kqamqnarks rhgkikgvsy ngcpmppphq slhpihqrhi
      541 tvptsipqqq vfalaepkrk pslfwhtfnk ltpfkk
//
LOCUS       XP_053914644             344 aa            linear   VRT 09-MAR-2023
DEFINITION  complement C1q and tumor necrosis factor-related protein 9A
            [Cuculus canorus].
ACCESSION   XP_053914644
VERSION     XP_053914644.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058669.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..344
                     /product="complement C1q and tumor necrosis factor-related
                     protein 9A"
                     /calculated_mol_wt=35731
     Region          <26..>103
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <84..>201
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          199..330
                     /region_name="C1Q"
                     /note="Complement component C1q domain; smart00110"
                     /db_xref="CDD:128420"
     CDS             1..344
                     /gene="LOC104064222"
                     /coded_by="XM_054058669.1:1294..2328"
                     /db_xref="GeneID:104064222"
ORIGIN      
        1 mknwiillai avstaetqke dlctqgypgi pgnpghngip grdgrdgskg nkgdtgeagl
       61 pgrpgkdgvn gqkgeqgang tveekgnkgd kgerghpgkf gpkgimgsvg ykgqkgelgl
      121 qgqkglkgdi gpigpkgtkg eighpgrvgf pgpigptgnp gpkgntgdlg ppghpgiqge
      181 rglkgdrgdk gnigapgvqp rsafsvgltv atkfpppnrp ikfdkvlyng lndynpatgk
      241 ftckypgvyy ftyhitvysr nvrvalvkng ikmlhtedry qsgedqasga tilelqggde
      301 vwlqahqgen fnglyadadd dttftgfllf snsgppdllp lptv
//
LOCUS       XP_009564819             344 aa            linear   VRT 09-MAR-2023
DEFINITION  complement C1q and tumor necrosis factor-related protein 9A
            [Cuculus canorus].
ACCESSION   XP_009564819
VERSION     XP_009564819.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566524.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564819.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..344
                     /product="complement C1q and tumor necrosis factor-related
                     protein 9A"
                     /calculated_mol_wt=35731
     Region          <26..>103
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <84..>201
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          199..330
                     /region_name="C1Q"
                     /note="Complement component C1q domain; smart00110"
                     /db_xref="CDD:128420"
     CDS             1..344
                     /gene="LOC104064222"
                     /coded_by="XM_009566524.2:1239..2273"
                     /db_xref="GeneID:104064222"
ORIGIN      
        1 mknwiillai avstaetqke dlctqgypgi pgnpghngip grdgrdgskg nkgdtgeagl
       61 pgrpgkdgvn gqkgeqgang tveekgnkgd kgerghpgkf gpkgimgsvg ykgqkgelgl
      121 qgqkglkgdi gpigpkgtkg eighpgrvgf pgpigptgnp gpkgntgdlg ppghpgiqge
      181 rglkgdrgdk gnigapgvqp rsafsvgltv atkfpppnrp ikfdkvlyng lndynpatgk
      241 ftckypgvyy ftyhitvysr nvrvalvkng ikmlhtedry qsgedqasga tilelqggde
      301 vwlqahqgen fnglyadadd dttftgfllf snsgppdllp lptv
//
LOCUS       XP_053914662            1173 aa            linear   VRT 09-MAR-2023
DEFINITION  WASH complex subunit 4 isoform X1 [Cuculus canorus].
ACCESSION   XP_053914662
VERSION     XP_053914662.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058687.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1173
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1173
                     /product="WASH complex subunit 4 isoform X1"
                     /calculated_mol_wt=136031
     Region          32..600
                     /region_name="WASH-4_N"
                     /note="WASH complex subunit 4, N-terminal; pfam14745"
                     /db_xref="CDD:434178"
     Region          605..949
                     /region_name="WASH-7_mid"
                     /note="WASH complex subunit 7; pfam14744"
                     /db_xref="CDD:434177"
     Region          966..1135
                     /region_name="WASH-7_C"
                     /note="WASH complex subunit 7, C-terminal; pfam14746"
                     /db_xref="CDD:464293"
     CDS             1..1173
                     /gene="WASHC4"
                     /coded_by="XM_054058687.1:97..3618"
                     /db_xref="GeneID:104060219"
ORIGIN      
        1 maletlspdw efdrlddgsq kihaevqlkn ygkfleeyts qlkriedald dsvgdvwdfs
       61 ldpialkllp yeqsslleli ktenkvlnkv itvyaalcce ikklkyeaet kfyngllfyg
      121 egatdssmve gdcqiqmgrf vsflqelscf vtrcyevvvn vvhqlaalyt snknapkiie
      181 tsgvhfqamy ehlgelltvl itldeiidnh atlkdhwtmy krllksvhhn pskfgiqedk
      241 lkpfeklllk lecqlldgmi fqgcieqqfd slnggvsvsk nstfaeefah ilrvtfahve
      301 aklgepseid qrdkyvgicg lfvlhfqifr tidkkfyksl ldackkvpai tltaniiwfa
      361 dnfliqkipa aaklldkksi htvkmqrenf lqqkaqsltk dmqsyyvfvs swmtkmesvl
      421 skeqrmdkft edlsnrcnvf iqgflyaysl stvikttmnl ymsmqkpmtk tsvkalcrlv
      481 ellkaiqhmf yrrsmvvads vthivqhlqy qalhaisvak krvisdkkys eqrldvlsal
      541 vlaentligp strqrrlivs lalsvgtqmk tfkdeelipl qlvlkkldli seliervraq
      601 cdccflywhr avfpiylddv yenavdsarl hymfsalrdc vpammharhl esyevllecy
      661 dkeimevlne hlldklckei ekdlrlsvht hlklddrnpf rvgmkdlahf fflnpirffn
      721 rfidikayvt hyldktfynl ttvalhdwat ysemrnlatq ryglsmteah lpsqtleqgl
      781 dvleimrnih vfvsrylynl nnqifierts nnkhlntini rhiansirth gtgimnttvn
      841 ftyqflrkkf yifsqfmyde hiksrlikdi rffrevkdqn dhkypferad kfnrgirklg
      901 itpdgqsyld qfrqlisqig namgyvrmir sgglhccssa irfvpdledi vnfeelvkee
      961 glseetqkaa rqldsvlsdl trnfaegtey fkmlvdvfap efrspknmhl rnfyiivppl
     1021 tlnfvehsis ckeklnkknk sgaaftddgf amgvayilkl ldqyqefdsl hwfqsvreky
     1081 vkeiravakq qnvqstnqde kllqtmnlth krlevclqef ellyfslssa riffradkta
     1141 aeenqekkek edesvkasng dlsnstpadp vvk
//
LOCUS       XP_053914670            1171 aa            linear   VRT 09-MAR-2023
DEFINITION  WASH complex subunit 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053914670
VERSION     XP_053914670.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058695.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1171
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1171
                     /product="WASH complex subunit 4 isoform X2"
                     /calculated_mol_wt=135858
     Region          32..598
                     /region_name="WASH-4_N"
                     /note="WASH complex subunit 4, N-terminal; pfam14745"
                     /db_xref="CDD:434178"
     Region          603..947
                     /region_name="WASH-7_mid"
                     /note="WASH complex subunit 7; pfam14744"
                     /db_xref="CDD:434177"
     Region          964..1133
                     /region_name="WASH-7_C"
                     /note="WASH complex subunit 7, C-terminal; pfam14746"
                     /db_xref="CDD:464293"
     CDS             1..1171
                     /gene="WASHC4"
                     /coded_by="XM_054058695.1:97..3612"
                     /db_xref="GeneID:104060219"
ORIGIN      
        1 maletlspdw efdrlddgsq kihaevqlkn ygkfleeyts qlkriedald dsvgdvwdfs
       61 ldpialkllp yeqsslleli ktenkvlnkv itvyaalcce ikklkyeaet kfyngllfyg
      121 egdssmvegd cqiqmgrfvs flqelscfvt rcyevvvnvv hqlaalytsn knapkiiets
      181 gvhfqamyeh lgelltvlit ldeiidnhat lkdhwtmykr llksvhhnps kfgiqedklk
      241 pfeklllkle cqlldgmifq gcieqqfdsl nggvsvskns tfaeefahil rvtfahveak
      301 lgepseidqr dkyvgicglf vlhfqifrti dkkfykslld ackkvpaitl taniiwfadn
      361 fliqkipaaa klldkksiht vkmqrenflq qkaqsltkdm qsyyvfvssw mtkmesvlsk
      421 eqrmdkfted lsnrcnvfiq gflyayslst vikttmnlym smqkpmtkts vkalcrlvel
      481 lkaiqhmfyr rsmvvadsvt hivqhlqyqa lhaisvakkr visdkkyseq rldvlsalvl
      541 aentligpst rqrrlivsla lsvgtqmktf kdeeliplql vlkkldlise liervraqcd
      601 ccflywhrav fpiylddvye navdsarlhy mfsalrdcvp ammharhles yevllecydk
      661 eimevlnehl ldklckeiek dlrlsvhthl klddrnpfrv gmkdlahfff lnpirffnrf
      721 idikayvthy ldktfynltt valhdwatys emrnlatqry glsmteahlp sqtleqgldv
      781 leimrnihvf vsrylynlnn qifiertsnn khlntinirh iansirthgt gimnttvnft
      841 yqflrkkfyi fsqfmydehi ksrlikdirf frevkdqndh kypferadkf nrgirklgit
      901 pdgqsyldqf rqlisqigna mgyvrmirsg glhccssair fvpdledivn feelvkeegl
      961 seetqkaarq ldsvlsdltr nfaegteyfk mlvdvfapef rspknmhlrn fyiivppltl
     1021 nfvehsisck eklnkknksg aaftddgfam gvayilklld qyqefdslhw fqsvrekyvk
     1081 eiravakqqn vqstnqdekl lqtmnlthkr levclqefel lyfslssari ffradktaae
     1141 enqekkeked esvkasngdl snstpadpvv k
//
LOCUS       XP_009560282             658 aa            linear   VRT 09-MAR-2023
DEFINITION  DCC-interacting protein 13-beta isoform X1 [Cuculus canorus].
ACCESSION   XP_009560282
VERSION     XP_009560282.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009561987.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..658
                     /product="DCC-interacting protein 13-beta isoform X1"
                     /calculated_mol_wt=73821
     Region          20..234
                     /region_name="BAR_APPL2"
                     /note="The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor
                     protein, Phosphotyrosine interaction, PH domain and
                     Leucine zipper containing 2; cd07632"
                     /db_xref="CDD:153316"
     Site            order(20,46,119,121,130,146,149,152,154,158,173)
                     /site_type="other"
                     /note="putative membrane interaction site"
                     /db_xref="CDD:153316"
     Site            order(29,32..33,37,40,43..44,47,57..58,60..61,64..65,
                     67..68,71,89,186,189..190,192,197..198,200..201,204..205,
                     207..208,211..212,214..215,219,222)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:153316"
     Region          252..376
                     /region_name="BAR-PH_APPL"
                     /note="Adaptor protein containing PH domain, PTB domain,
                     and Leucine zipper motif Bin1/amphiphysin/Rvs167
                     (BAR)-Pleckstrin homology (PH) domain; cd13247"
                     /db_xref="CDD:270067"
     Region          478..611
                     /region_name="PTB_APPL"
                     /note="Adaptor protein containing PH domain, PTB domain,
                     and Leucine zipper motif (APPL; also called
                     DCC-interacting protein (DIP)-13alpha)
                     Phosphotyrosine-binding (PTB) domain; cd13158"
                     /db_xref="CDD:269980"
     Site            order(493,570,593)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:269980"
     Site            order(559..564,577,602,606)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:269980"
     CDS             1..658
                     /gene="APPL2"
                     /coded_by="XM_009561987.2:92..2068"
                     /db_xref="GeneID:104060220"
ORIGIN      
        1 mpavdkllle ealqdspqtr sllsvfeeda gtlteytnql lqamqrvyga qnemclatqq
       61 lskqllayek qhfalgkgde evistlhyfs kvvdelnilh selakqladt milpiiqfre
      121 kdltevstlk dlfglasneh dvsmakysrl pkrkeneklk aevakevana rrkqhlsslq
      181 yycalnalqy rkrvamvepm lgytrgqinf fkkgaemfsk rmdsflssvs dmvqsiqgel
      241 daeaekmris qqdliavnes vytpdsdvts pvinrnliqk agylnlrnkt glvtttwerl
      301 yfftqggnlm cqprgavagg liqdldncsv mavdcedrry cfqittptgk tgitlqaesk
      361 keyeewicai nnisrqiylt dnpeaaaikl nqtalqavtp itsfgkkhev rhpsqnvknt
      421 endkiipses agiqdstqli apgtpiqfdi vlpatefldq nrggrranpf gesedsskde
      481 eqdsllqqmf vvrflgsmav qsdetseviy eamrqvlaar aihnifrmte shlmvtsknl
      541 rlidpqtqvt rtsfelatvt qfaahqdnrr ligfvvhlse tlgeesmsay vfesntegek
      601 icyaislgke iieaqkdpea laqlmksvpl tndgkfmlln dqseedgtmh eegeesea
//
LOCUS       XP_053914690             605 aa            linear   VRT 09-MAR-2023
DEFINITION  DCC-interacting protein 13-beta isoform X2 [Cuculus canorus].
ACCESSION   XP_053914690
VERSION     XP_053914690.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058715.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..605
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..605
                     /product="DCC-interacting protein 13-beta isoform X2"
                     /calculated_mol_wt=67882
     Region          1..181
                     /region_name="BAR"
                     /note="The Bin/Amphiphysin/Rvs (BAR) domain, a
                     dimerization module that binds membranes and detects
                     membrane curvature; cl12013"
                     /db_xref="CDD:472257"
     Region          199..323
                     /region_name="BAR-PH_APPL"
                     /note="Adaptor protein containing PH domain, PTB domain,
                     and Leucine zipper motif Bin1/amphiphysin/Rvs167
                     (BAR)-Pleckstrin homology (PH) domain; cd13247"
                     /db_xref="CDD:270067"
     Region          425..558
                     /region_name="PTB_APPL"
                     /note="Adaptor protein containing PH domain, PTB domain,
                     and Leucine zipper motif (APPL; also called
                     DCC-interacting protein (DIP)-13alpha)
                     Phosphotyrosine-binding (PTB) domain; cd13158"
                     /db_xref="CDD:269980"
     Site            order(440,517,540)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:269980"
     Site            order(506..511,524,549,553)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:269980"
     CDS             1..605
                     /gene="APPL2"
                     /coded_by="XM_054058715.1:61..1878"
                     /db_xref="GeneID:104060220"
ORIGIN      
        1 mclatqqlsk qllayekqhf algkgdeevi stlhyfskvv delnilhsel akqladtmil
       61 piiqfrekdl tevstlkdlf glasnehdvs makysrlpkr keneklkaev akevanarrk
      121 qhlsslqyyc alnalqyrkr vamvepmlgy trgqinffkk gaemfskrmd sflssvsdmv
      181 qsiqgeldae aekmrisqqd liavnesvyt pdsdvtspvi nrnliqkagy lnlrnktglv
      241 tttwerlyff tqggnlmcqp rgavaggliq dldncsvmav dcedrrycfq ittptgktgi
      301 tlqaeskkey eewicainni srqiyltdnp eaaaiklnqt alqavtpits fgkkhevrhp
      361 sqnvkntend kiipsesagi qdstqliapg tpiqfdivlp atefldqnrg grranpfges
      421 edsskdeeqd sllqqmfvvr flgsmavqsd etseviyeam rqvlaaraih nifrmteshl
      481 mvtsknlrli dpqtqvtrts felatvtqfa ahqdnrrlig fvvhlsetlg eesmsayvfe
      541 sntegekicy aislgkeiie aqkdpealaq lmksvpltnd gkfmllndqs eedgtmheeg
      601 eesea
//
LOCUS       XP_009557132            1447 aa            linear   VRT 09-MAR-2023
DEFINITION  mediator of RNA polymerase II transcription subunit 14 isoform X1
            [Cuculus canorus].
ACCESSION   XP_009557132
VERSION     XP_009557132.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009558837.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009557132.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1447
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1447
                     /product="mediator of RNA polymerase II transcription
                     subunit 14 isoform X1"
                     /calculated_mol_wt=160058
     Region          40..227
                     /region_name="Med14"
                     /note="Mediator complex subunit MED14; pfam08638"
                     /db_xref="CDD:462543"
     Region          <1014..>1183
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     CDS             1..1447
                     /gene="MED14"
                     /coded_by="XM_009558837.2:241..4584"
                     /db_xref="GeneID:104057469"
ORIGIN      
        1 mapvqlesnq lvpagggpas apappapgav taaaspgyrl stlidfllhr tyaeltvlad
       61 llprktdmer kieivqfasr trqlfvrlla lvkwannagk vekcamissf ldqqailfvd
      121 tadrlaslar dalvharlps faipyaidvl ttgsyprlpt cirdkiippd pitksekqtt
      181 lhqlnqilrh rlvttdlppq lanltvangr vkfrvegefe atltvmgddp dipwrllkle
      241 ilvedketgd gralvhsmqi sfihqlvqsr lfadekplqd mynclhsfcl alqlevlhsq
      301 tlmlirerwg dlvqveryha gkclslsvwn qqvlgrktgt asvhkvtiki detdvskplq
      361 ishepplpac dsklmeramk idhlsiekll idsvharshq klqelkailk synandnsfi
      421 etalptlvip ilepcgrsec lhvfvdlhsg mfqlmlygvd qltlddieks vnddmkriip
      481 wlqqlkfwlg qqrckqsikh lptvssetlq lanyashpvg nlskhklfik ltrlpqyyiv
      541 vemfdvpgnp teleykyhfl svsyaegdds patalllqqf kpnieelvld tksgkqmksg
      601 vkrklsddpc svepkkpkrs gemcafnkvl ahvvamcdtn mpfiglrmel snmdiphqgv
      661 qvegdgfsha irllkippck gvneetqkal drslldctfr lqgrnnrtwv aelvfancpl
      721 nstssreqgp trhvyltyen qlsepvggrk vvemflndws siarlyecvl efartlpdip
      781 nhlnvfsevr iynyrklilc ygttkgssis iqwnsllqkf hislgtvgpn sgcsnchnti
      841 lhqlqemfnk tpnvvqllqv lfdtqaplna inklptvpml gltqrtntay qcfsilpqsp
      901 thirlafrnm ycidiycrsr gvvairdgay slfdnskive gfypapglkt flnmfvdsnq
      961 darrrsvned dnppspiggd mmdslisqlq pqqppqqpqq qpfakqtgas gaypltsppt
     1021 syhntvtpsp smmhtqspga lhaasspsga lrapspasfg ptpspsslgi tmgqtanfas
     1081 phgtvdpssp ytmmspsqra gnwpgspqvs gpspaarmpg mspanpslhs pipdashspr
     1141 agtssqampt smppprklpq rswaasipti lthsalnill lpsptpglvp glagsylcsp
     1201 lerflgsvim rrhlqriiqq etlqlinsne pgvimfktea lkcrvalnpk tnqtlqlkvt
     1261 pentgqwkse elqvlekffe trvagppfka ntliaftkll gapthilrdc vhimklelfp
     1321 dqasqlkwnv qfcltippsa ppiappgtpa vvlkskmlff lqltqkttvp qeavsiivpi
     1381 iydmasgttq qadiprqqns svaapmmvsn ilkrfaelns prpgectifa avrdlmvnlt
     1441 lppggrp
//
LOCUS       XP_053914709            1386 aa            linear   VRT 09-MAR-2023
DEFINITION  mediator of RNA polymerase II transcription subunit 14 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053914709
VERSION     XP_053914709.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058734.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1386
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1386
                     /product="mediator of RNA polymerase II transcription
                     subunit 14 isoform X2"
                     /calculated_mol_wt=153892
     Region          40..227
                     /region_name="Med14"
                     /note="Mediator complex subunit MED14; pfam08638"
                     /db_xref="CDD:462543"
     Region          <1014..>1123
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     CDS             1..1386
                     /gene="MED14"
                     /coded_by="XM_054058734.1:242..4402"
                     /db_xref="GeneID:104057469"
ORIGIN      
        1 mapvqlesnq lvpagggpas apappapgav taaaspgyrl stlidfllhr tyaeltvlad
       61 llprktdmer kieivqfasr trqlfvrlla lvkwannagk vekcamissf ldqqailfvd
      121 tadrlaslar dalvharlps faipyaidvl ttgsyprlpt cirdkiippd pitksekqtt
      181 lhqlnqilrh rlvttdlppq lanltvangr vkfrvegefe atltvmgddp dipwrllkle
      241 ilvedketgd gralvhsmqi sfihqlvqsr lfadekplqd mynclhsfcl alqlevlhsq
      301 tlmlirerwg dlvqveryha gkclslsvwn qqvlgrktgt asvhkvtiki detdvskplq
      361 ishepplpac dsklmeramk idhlsiekll idsvharshq klqelkailk synandnsfi
      421 etalptlvip ilepcgrsec lhvfvdlhsg mfqlmlygvd qltlddieks vnddmkriip
      481 wlqqlkfwlg qqrckqsikh lptvssetlq lanyashpvg nlskhklfik ltrlpqyyiv
      541 vemfdvpgnp teleykyhfl svsyaegdds patalllqqf kpnieelvld tksgkqmksg
      601 vkrklsddpc svepkkpkrs gemcafnkvl ahvvamcdtn mpfiglrmel snmdiphqgv
      661 qvegdgfsha irllkippck gvneetqkal drslldctfr lqgrnnrtwv aelvfancpl
      721 nstssreqgp trhvyltyen qlsepvggrk vvemflndws siarlyecvl efartlpdip
      781 nhlnvfsevr iynyrklilc ygttkgssis iqwnsllqkf hislgtvgpn sgcsnchnti
      841 lhqlqemfnk tpnvvqllqv lfdtqaplna inklptvpml gltqrtntay qcfsilpqsp
      901 thirlafrnm ycidiycrsr gvvairdgay slfdnskive gfypapglkt flnmfvdsnq
      961 darrrsvned dnppspiggd mmdslisqlq pqqppqqpqq qpfakqtgas gaypltsppt
     1021 syhntvtpsp smmhtqspga lhaasspsga lrapspasfg ptpspsslgi tmgqtanfas
     1081 phgsqampts mppprklpqr swaasiptil thsalnilll psptpglvpg lagsylcspl
     1141 erflgsvimr rhlqriiqqe tlqlinsnep gvimfkteal kcrvalnpkt nqtlqlkvtp
     1201 entgqwksee lqvlekffet rvagppfkan tliaftkllg apthilrdcv himklelfpd
     1261 qasqlkwnvq fcltippsap piappgtpav vlkskmlffl qltqkttvpq eavsiivpii
     1321 ydmasgttqq adiprqqnss vaapmmvsni lkrfaelnsp rpgectifaa vrdlmvnltl
     1381 ppggrp
//
LOCUS       XP_053914720             362 aa            linear   VRT 09-MAR-2023
DEFINITION  renin receptor [Cuculus canorus].
ACCESSION   XP_053914720
VERSION     XP_053914720.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058745.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..362
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..362
                     /product="renin receptor"
                     /calculated_mol_wt=39887
     Region          267..362
                     /region_name="Renin_r"
                     /note="Renin receptor-like protein; pfam07850"
                     /db_xref="CDD:462287"
     CDS             1..362
                     /gene="ATP6AP2"
                     /coded_by="XM_054058745.1:77..1165"
                     /db_xref="GeneID:104057292"
ORIGIN      
        1 mgwrggapra pgtaaaalll astllvgvca defsvlrspq svvfrdgswp ipgeripdva
       61 altmgfsved dlpwpglgvg dlfhrpratv lvtvkgvdkl alpakgisyp ienavpfsld
      121 svanaihtlf seetpvvlql apseervymv gkansvfedl svtlrqlrnr lfqdnsilss
      181 lplnslsrns eadllflsel qvlhdiasll srhkhlakdr spdlyslela gleeigkryg
      241 edsqqfkdas qilvdslqkf ademfnlygg navvevvavk afnspltrks rsilqssqse
      301 tetpynlayp ynydysvifn iilwmmigla lavivisynl wnmdpgydsi iyrmtnqkir
      361 md
//
LOCUS       XP_053914729            1199 aa            linear   VRT 09-MAR-2023
DEFINITION  fibronectin type-III domain-containing protein 3A isoform X1
            [Cuculus canorus].
ACCESSION   XP_053914729
VERSION     XP_053914729.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058754.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1199
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1199
                     /product="fibronectin type-III domain-containing protein
                     3A isoform X1"
                     /calculated_mol_wt=131472
     Region          <287..>604
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          466..>878
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          <823..>1071
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          1048..1145
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1048,1111,1126)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(1127,1136,1138..1139)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1199
                     /gene="FNDC3A"
                     /coded_by="XM_054058754.1:175..3774"
                     /db_xref="GeneID:104066153"
ORIGIN      
        1 mmaehpplld ttsiisseip lltspivsgd gsqqvilvhv npgeaftirr edgqfqcitg
       61 paqvpmmspn gsvptiyvpp gyapqviedn gvrrvmvvpq apefhpggha vihrpphppl
      121 pgflplpaii pppprhiysp vsgasdiptq yipqyhtsqm ygdldtlpah grsnfrders
      181 sktyerlqkk lkdrhgtqkd klnsppsspq kcpsptsehn gltkgqdagg istgstksks
      241 lgkgksnsqt daeveekdee tkalevllsk iakpvvsdiq artalltwsp pssdtgedad
      301 kndvpdvyiy evmisntgkd gkyktvyige enkvtvndlr patdyhakvq vecncvkgsp
      361 seaesfttts cepdapnlpr itnrtknslt lqwkascdng skihsyllew degkgngefc
      421 qcyygqqkqy ritklspamg ytfrlaaknd mgmsgfseev lyhtsgtapt tpaspllina
      481 gvtwlslqwt kpsgtpsdeg isyilemede nsgygfkpky dgddltytvk nlrrstkykf
      541 rviaynsegk sspsetveyi tcpdkpgaps kptvkgkiha qsfkitwdpp kdnggaaint
      601 yvvemsegln gnkwdmiysg aarehvcdrl npgcsyrlrv ycvgeggqst asdsltvqtp
      661 avvpgpcqpp rlqgrprare vqlrwgppqa dggspitcyg lemfqtetde hrevyqgsdv
      721 ectvgsllpg riynfrlraa nktgfgpyse kcevttapgp pdqckppqva crsaacaqvs
      781 wevpvsngad iteyrlewgg vegcmqiyyc gpglscemkg llpatiyycr vqavngagag
      841 pfsevvacmt pasvpavvts lrglsedeve sphyspstcl aiswekpcdh gseilgysid
      901 fgdkqpitvg kvltyfidgl qpdttyrvri qalnslgagp fshtiklktk plppdpprle
      961 caayssqtlk lkwgegtaka ltdsiqyhlq medkngrfvs lyrgpchtyk vqrlsestsy
     1021 kfciqacnea gegplsqeyi fttpksipaa lkaprierin dhtceitwea lqpmkgdpvi
     1081 yclqvmvgkd sefkqiykgp dwsfrytglq qnceyrfrac airqcqetag hqdlvgpyst
     1141 pvlfisqrte ppastnkdtm qttrtqwsqs dqvcaavila lfaifsilia viiqyfvik
//
LOCUS       XP_053914739            1199 aa            linear   VRT 09-MAR-2023
DEFINITION  fibronectin type-III domain-containing protein 3A isoform X1
            [Cuculus canorus].
ACCESSION   XP_053914739
VERSION     XP_053914739.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058764.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1199
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1199
                     /product="fibronectin type-III domain-containing protein
                     3A isoform X1"
                     /calculated_mol_wt=131472
     Region          <287..>604
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          466..>878
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          <823..>1071
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          1048..1145
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1048,1111,1126)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(1127,1136,1138..1139)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1199
                     /gene="FNDC3A"
                     /coded_by="XM_054058764.1:164..3763"
                     /db_xref="GeneID:104066153"
ORIGIN      
        1 mmaehpplld ttsiisseip lltspivsgd gsqqvilvhv npgeaftirr edgqfqcitg
       61 paqvpmmspn gsvptiyvpp gyapqviedn gvrrvmvvpq apefhpggha vihrpphppl
      121 pgflplpaii pppprhiysp vsgasdiptq yipqyhtsqm ygdldtlpah grsnfrders
      181 sktyerlqkk lkdrhgtqkd klnsppsspq kcpsptsehn gltkgqdagg istgstksks
      241 lgkgksnsqt daeveekdee tkalevllsk iakpvvsdiq artalltwsp pssdtgedad
      301 kndvpdvyiy evmisntgkd gkyktvyige enkvtvndlr patdyhakvq vecncvkgsp
      361 seaesfttts cepdapnlpr itnrtknslt lqwkascdng skihsyllew degkgngefc
      421 qcyygqqkqy ritklspamg ytfrlaaknd mgmsgfseev lyhtsgtapt tpaspllina
      481 gvtwlslqwt kpsgtpsdeg isyilemede nsgygfkpky dgddltytvk nlrrstkykf
      541 rviaynsegk sspsetveyi tcpdkpgaps kptvkgkiha qsfkitwdpp kdnggaaint
      601 yvvemsegln gnkwdmiysg aarehvcdrl npgcsyrlrv ycvgeggqst asdsltvqtp
      661 avvpgpcqpp rlqgrprare vqlrwgppqa dggspitcyg lemfqtetde hrevyqgsdv
      721 ectvgsllpg riynfrlraa nktgfgpyse kcevttapgp pdqckppqva crsaacaqvs
      781 wevpvsngad iteyrlewgg vegcmqiyyc gpglscemkg llpatiyycr vqavngagag
      841 pfsevvacmt pasvpavvts lrglsedeve sphyspstcl aiswekpcdh gseilgysid
      901 fgdkqpitvg kvltyfidgl qpdttyrvri qalnslgagp fshtiklktk plppdpprle
      961 caayssqtlk lkwgegtaka ltdsiqyhlq medkngrfvs lyrgpchtyk vqrlsestsy
     1021 kfciqacnea gegplsqeyi fttpksipaa lkaprierin dhtceitwea lqpmkgdpvi
     1081 yclqvmvgkd sefkqiykgp dwsfrytglq qnceyrfrac airqcqetag hqdlvgpyst
     1141 pvlfisqrte ppastnkdtm qttrtqwsqs dqvcaavila lfaifsilia viiqyfvik
//
LOCUS       XP_053914747            1142 aa            linear   VRT 09-MAR-2023
DEFINITION  fibronectin type-III domain-containing protein 3A isoform X2
            [Cuculus canorus].
ACCESSION   XP_053914747
VERSION     XP_053914747.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058772.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1142
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1142
                     /product="fibronectin type-III domain-containing protein
                     3A isoform X2"
                     /calculated_mol_wt=125317
     Region          <230..>547
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          409..>821
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          <766..>1014
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          991..1088
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(991,1054,1069)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(1070,1079,1081..1082)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1142
                     /gene="FNDC3A"
                     /coded_by="XM_054058772.1:16..3444"
                     /db_xref="GeneID:104066153"
ORIGIN      
        1 msgpaqvpmm spngsvptiy vppgyapqvi edngvrrvmv vpqapefhpg ghavihrpph
       61 pplpgflplp aiipppprhi yspvsgasdi ptqyipqyht sqmygdldtl pahgrsnfrd
      121 erssktyerl qkklkdrhgt qkdklnspps spqkcpspts ehngltkgqd aggistgstk
      181 skslgkgksn sqtdaeveek deetkalevl lskiakpvvs diqartallt wsppssdtge
      241 dadkndvpdv yiyevmisnt gkdgkyktvy igeenkvtvn dlrpatdyha kvqvecncvk
      301 gspseaesft ttscepdapn lpritnrtkn sltlqwkasc dngskihsyl lewdegkgng
      361 efcqcyygqq kqyritklsp amgytfrlaa kndmgmsgfs eevlyhtsgt apttpaspll
      421 inagvtwlsl qwtkpsgtps degisyilem edensgygfk pkydgddlty tvknlrrstk
      481 ykfrviayns egksspsetv eyitcpdkpg apskptvkgk ihaqsfkitw dppkdnggaa
      541 intyvvemse glngnkwdmi ysgaarehvc drlnpgcsyr lrvycvgegg qstasdsltv
      601 qtpavvpgpc qpprlqgrpr arevqlrwgp pqadggspit cyglemfqte tdehrevyqg
      661 sdvectvgsl lpgriynfrl raanktgfgp ysekcevtta pgppdqckpp qvacrsaaca
      721 qvswevpvsn gaditeyrle wggvegcmqi yycgpglsce mkgllpatiy ycrvqavnga
      781 gagpfsevva cmtpasvpav vtslrglsed evesphysps tclaiswekp cdhgseilgy
      841 sidfgdkqpi tvgkvltyfi dglqpdttyr vriqalnslg agpfshtikl ktkplppdpp
      901 rlecaayssq tlklkwgegt akaltdsiqy hlqmedkngr fvslyrgpch tykvqrlses
      961 tsykfciqac neagegplsq eyifttpksi paalkaprie rindhtceit wealqpmkgd
     1021 pviyclqvmv gkdsefkqiy kgpdwsfryt glqqnceyrf racairqcqe taghqdlvgp
     1081 ystpvlfisq rteppastnk dtmqttrtqw sqsdqvcaav ilalfaifsi liaviiqyfv
     1141 ik
//
LOCUS       XP_053914764             418 aa            linear   VRT 09-MAR-2023
DEFINITION  putative RNA-binding protein Luc7-like 2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053914764
VERSION     XP_053914764.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058789.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..418
                     /product="putative RNA-binding protein Luc7-like 2 isoform
                     X1"
                     /calculated_mol_wt=49124
     Region          47..261
                     /region_name="LUC7"
                     /note="LUC7 N_terminus; pfam03194"
                     /db_xref="CDD:460842"
     CDS             1..418
                     /gene="LUC7L2"
                     /coded_by="XM_054058789.1:16..1272"
                     /db_xref="GeneID:104055474"
ORIGIN      
        1 mslsaiscpd nnstpdrfnv slpayinlqg svtkaphsps rdttrqrikf sddrvckshl
       61 lnccphdvls gtrmdlgecl kvhdlalrad yeiaskdqdf ffeldamdhl qsfiadcdrr
      121 tevakkrlae tqeeisaeva akaervheln eeigkllakv eqlgadgnve esqkvmdeve
      181 karvkkreae evyrnsmpas sfqqqklrvc evcsaylglh dndrrladhf ggklhlgfie
      241 irekleelrr ivadkqekrn qerlkrreer ereereklrr srshskhakr srsrdrrrhr
      301 srsasrerkr rtrsksrekr hrhrsrstsr srsrshhrsr hssrersrer sskkrssker
      361 ssrdkersrd rdrtsrdkdr ssrersprdf kdkkrsyesa ngrsedprss eereagei
//
LOCUS       XP_053914770             398 aa            linear   VRT 09-MAR-2023
DEFINITION  putative RNA-binding protein Luc7-like 2 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053914770
VERSION     XP_053914770.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058795.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..398
                     /product="putative RNA-binding protein Luc7-like 2 isoform
                     X2"
                     /calculated_mol_wt=47049
     Region          5..241
                     /region_name="LUC7"
                     /note="LUC7 N_terminus; pfam03194"
                     /db_xref="CDD:460842"
     CDS             1..398
                     /gene="LUC7L2"
                     /coded_by="XM_054058795.1:287..1483"
                     /db_xref="GeneID:104055474"
ORIGIN      
        1 msaqaqmram ldqlmgtsrd gdttrqrikf sddrvckshl lnccphdvls gtrmdlgecl
       61 kvhdlalrad yeiaskdqdf ffeldamdhl qsfiadcdrr tevakkrlae tqeeisaeva
      121 akaervheln eeigkllakv eqlgadgnve esqkvmdeve karvkkreae evyrnsmpas
      181 sfqqqklrvc evcsaylglh dndrrladhf ggklhlgfie irekleelrr ivadkqekrn
      241 qerlkrreer ereereklrr srshskhakr srsrdrrrhr srsasrerkr rtrsksrekr
      301 hrhrsrstsr srsrshhrsr hssrersrer sskkrssker ssrdkersrd rdrtsrdkdr
      361 ssrersprdf kdkkrsyesa ngrsedprss eereagei
//
LOCUS       XP_053914781             345 aa            linear   VRT 09-MAR-2023
DEFINITION  putative RNA-binding protein Luc7-like 2 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053914781
VERSION     XP_053914781.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058806.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..345
                     /product="putative RNA-binding protein Luc7-like 2 isoform
                     X3"
                     /calculated_mol_wt=41084
     Region          <1..188
                     /region_name="LUC7"
                     /note="LUC7 N_terminus; pfam03194"
                     /db_xref="CDD:460842"
     CDS             1..345
                     /gene="LUC7L2"
                     /coded_by="XM_054058806.1:313..1350"
                     /db_xref="GeneID:104055474"
ORIGIN      
        1 mdlgeclkvh dlalradyei askdqdfffe ldamdhlqsf iadcdrrtev akkrlaetqe
       61 eisaevaaka ervhelneei gkllakveql gadgnveesq kvmdevekar vkkreaeevy
      121 rnsmpassfq qqklrvcevc saylglhdnd rrladhfggk lhlgfieire kleelrriva
      181 dkqekrnqer lkrreerere ereklrrsrs hskhakrsrs rdrrrhrsrs asrerkrrtr
      241 sksrekrhrh rsrstsrsrs rshhrsrhss rersrerssk krsskerssr dkersrdrdr
      301 tsrdkdrssr ersprdfkdk krsyesangr sedprsseer eagei
//
LOCUS       XP_053914789             335 aa            linear   VRT 09-MAR-2023
DEFINITION  putative RNA-binding protein Luc7-like 2 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053914789
VERSION     XP_053914789.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058814.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..335
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..335
                     /product="putative RNA-binding protein Luc7-like 2 isoform
                     X4"
                     /calculated_mol_wt=39546
     Region          5..241
                     /region_name="LUC7"
                     /note="LUC7 N_terminus; pfam03194"
                     /db_xref="CDD:460842"
     CDS             1..335
                     /gene="LUC7L2"
                     /coded_by="XM_054058814.1:290..1297"
                     /db_xref="GeneID:104055474"
ORIGIN      
        1 msaqaqmram ldqlmgtsrd gdttrqrikf sddrvckshl lnccphdvls gtrmdlgecl
       61 kvhdlalrad yeiaskdqdf ffeldamdhl qsfiadcdrr tevakkrlae tqeeisaeva
      121 akaervheln eeigkllakv eqlgadgnve esqkvmdeve karvkkreae evyrnsmpas
      181 sfqqqklrvc evcsaylglh dndrrladhf ggklhlgfie irekleelrr ivadkqekrn
      241 qerlkrreer ereereklrr srshskhakr srsrdrrrhr srsasrerkr rtrsksrekr
      301 hrhrsrstsr srsrshhrsr hssrersrer sskkr
//
LOCUS       XP_009554894             150 aa            linear   VRT 09-MAR-2023
DEFINITION  cytoglobin-1 [Cuculus canorus].
ACCESSION   XP_009554894
VERSION     XP_009554894.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556599.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..150
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..150
                     /product="cytoglobin-1"
                     /calculated_mol_wt=17000
     Region          3..150
                     /region_name="Globin-like"
                     /note="Globin-like protein superfamily; cl21461"
                     /db_xref="CDD:473869"
     Site            order(32,64,67..68,71,92,95..96,107,110)
                     /site_type="other"
                     /note="cofactor binding site [chemical binding]"
                     /db_xref="CDD:381255"
     CDS             1..150
                     /gene="LOC104055475"
                     /coded_by="XM_009556599.2:93..545"
                     /db_xref="GeneID:104055475"
ORIGIN      
        1 mfseaevqsa rgawekiyvd aedngttvlv rmftehpdtk syfthfkgmd saeemkqsdq
       61 irghgkrvft aindmvqhld nseaflgivn plgkkhatql kidpknfrii cdiilqlmee
      121 kfggdckasf ekvtneicth lnnvykevgw
//
LOCUS       XP_053914813             110 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FMC1 homolog [Cuculus canorus].
ACCESSION   XP_053914813
VERSION     XP_053914813.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058838.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..110
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..110
                     /product="protein FMC1 homolog"
                     /calculated_mol_wt=12189
     Region          7..103
                     /region_name="Complex1_LYR_FMC1"
                     /note="LYR (leucine-tyrosine-arginine) motif found in
                     formation of mitochondrial complex V assembly factor 1
                     (FMC1) and similar proteins; cd20271"
                     /db_xref="CDD:380766"
     CDS             1..110
                     /gene="FMC1"
                     /coded_by="XM_054058838.1:147..479"
                     /db_xref="GeneID:104055524"
ORIGIN      
        1 maalgpplrt lrallrelry asghggrpyr rapayrhvla afrahrvtse klcraqqelh
       61 fqaatylcll rsvrehaalh qeyhgkgers peevaglvgf rlpqqpggkg
//
LOCUS       XP_053914825             641 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger CCCH-type antiviral protein 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053914825
VERSION     XP_053914825.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058850.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..641
                     /product="zinc finger CCCH-type antiviral protein 1
                     isoform X1"
                     /calculated_mol_wt=73564
     Region          5..57
                     /region_name="HTH_53"
                     /note="Zap helix turn helix N-terminal domain; pfam18606"
                     /db_xref="CDD:465819"
     Region          338..403
                     /region_name="WWE"
                     /note="WWE domain; pfam02825"
                     /db_xref="CDD:460715"
     Region          515..631
                     /region_name="TCCD_inducible_PARP_like"
                     /note="Poly(ADP-ribose) polymerases catalyse the covalent
                     attachment of ADP-ribose units from NAD+ to itself and to
                     a limited number of other DNA binding proteins, which
                     decreases their affinity for DNA. Poly(ADP-ribose)
                     polymerase is a regulatory component...; cd01439"
                     /db_xref="CDD:238719"
     Site            order(517..521,524,528,532..534,536,549..551,561,614)
                     /site_type="other"
                     /note="nad+ binding pocket [chemical binding]"
                     /db_xref="CDD:238719"
     CDS             1..641
                     /gene="LOC104062833"
                     /coded_by="XM_054058850.1:91..2016"
                     /db_xref="GeneID:104062833"
ORIGIN      
        1 msdpavscyl tktlcaqggr lplpelqrri glsapqlrdt laaagterfl llldgdarvl
       61 alaplrvcvr kecggcerlh lckshvlgrc rlgarscnys hdiispenrk vlkahglssl
      121 denelrvlll qndpfflpav chfyngkndt chqqnncnkl hicqhflqgq crflpcrksh
      181 nlldahalrv leaggidvnt asniqaicyh kymelnkelk kgiskkddss akdlkedkkd
      241 nsdeiclfyv wkyckhrdkc glvhyhlpyr wqvyngvswn dlhmmeeiek dycnpknsct
      301 adniidfrtm tdgpfsvrrl stpssvtkpt fvlttqwiwy wkndqgqwie ygqqgeedsv
      361 nspssavien lyladpdati sfqaglysyd lnfkemaqtn tssrtrrrvc rrpkfvssed
      421 vqrikkgqmd ssipnqacpt hwdqsalpdf gykavelsnt aseynqikqm fhqtmksysi
      481 lnikriqnps lwkvfrwqkd hmkrenggke vnerllfygt nssfveticn hnldwricgt
      541 ngnnygqgsy fatdasysha ycqpavktyt mfvarvlvge yikgkadyvr ppakpihklq
      601 fydscvndel npsvfvvyek nqiypeyiie ykdeekkcii s
//
LOCUS       XP_053914831             600 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger CCCH-type antiviral protein 1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053914831
VERSION     XP_053914831.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058856.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..600
                     /product="zinc finger CCCH-type antiviral protein 1
                     isoform X2"
                     /calculated_mol_wt=68601
     Region          51..103
                     /region_name="HTH_53"
                     /note="Zap helix turn helix N-terminal domain; pfam18606"
                     /db_xref="CDD:465819"
     Region          384..449
                     /region_name="WWE"
                     /note="WWE domain; pfam02825"
                     /db_xref="CDD:460715"
     Region          509..>593
                     /region_name="PARP"
                     /note="Poly(ADP-ribose) polymerase catalytic domain;
                     pfam00644"
                     /db_xref="CDD:395519"
     CDS             1..600
                     /gene="LOC104062833"
                     /coded_by="XM_054058856.1:52..1854"
                     /db_xref="GeneID:104062833"
ORIGIN      
        1 mtlvarpsal prgrapppaa ppapryrfrf lpslrspswp rlgertmsdp avscyltktl
       61 caqggrlplp elqrriglsa pqlrdtlaaa gterflllld gdarvlalap lrvcvrkecg
      121 gcerlhlcks hvlgrcrlga rscnyshdii spenrkvlka hglssldene lrvlllqndp
      181 fflpavchfy ngkndtchqq nncnklhicq hflqgqcrfl pcrkshnlld ahalrvleag
      241 gidvntasni qaicyhkyme lnkelkkgis kkddssakdl kedkkdnsde iclfyvwkyc
      301 khrdkcglvh yhlpyrwqvy ngvswndlhm meeiekdycn pknsctadni idfrtmtdgp
      361 fsvrrlstps svtkptfvlt tqwiwywknd qgqwieygqq geedsvnsps savienlyla
      421 dpdatisfqa glysydlnfk emaqtntssr trrrvcrrpk fvssedvqri kkgqmdssip
      481 nqacpthwdq salpdfgyka velsntasey nqikqmfhqt mksysilnik riqnpslwkv
      541 frwqkdhmkr enggkevner llfygtnssf veticnhnld wricgtngnn ygqvllsypt
//
LOCUS       XP_053914847             517 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger CCCH-type antiviral protein 1 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053914847
VERSION     XP_053914847.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058872.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..517
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..517
                     /product="zinc finger CCCH-type antiviral protein 1
                     isoform X3"
                     /calculated_mol_wt=58671
     Region          51..103
                     /region_name="HTH_53"
                     /note="Zap helix turn helix N-terminal domain; pfam18606"
                     /db_xref="CDD:465819"
     Region          384..449
                     /region_name="WWE"
                     /note="WWE domain; pfam02825"
                     /db_xref="CDD:460715"
     CDS             1..517
                     /gene="LOC104062833"
                     /coded_by="XM_054058872.1:57..1610"
                     /db_xref="GeneID:104062833"
ORIGIN      
        1 mtlvarpsal prgrapppaa ppapryrfrf lpslrspswp rlgertmsdp avscyltktl
       61 caqggrlplp elqrriglsa pqlrdtlaaa gterflllld gdarvlalap lrvcvrkecg
      121 gcerlhlcks hvlgrcrlga rscnyshdii spenrkvlka hglssldene lrvlllqndp
      181 fflpavchfy ngkndtchqq nncnklhicq hflqgqcrfl pcrkshnlld ahalrvleag
      241 gidvntasni qaicyhkyme lnkelkkgis kkddssakdl kedkkdnsde iclfyvwkyc
      301 khrdkcglvh yhlpyrwqvy ngvswndlhm meeiekdycn pknsctadni idfrtmtdgp
      361 fsvrrlstps svtkptfvlt tqwiwywknd qgqwieygqq geedsvnsps savienlyla
      421 dpdatisfqa glysydlnfk emaqtntssr trrrvcrrpk fvssedvqri kkgqmdssip
      481 nqacpthwdq salpdfgykv ilgltgilht cgdhrki
//
LOCUS       XP_053914857             453 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger CCCH-type antiviral protein 1 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053914857
VERSION     XP_053914857.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058882.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..453
                     /product="zinc finger CCCH-type antiviral protein 1
                     isoform X4"
                     /calculated_mol_wt=51609
     Region          5..57
                     /region_name="HTH_53"
                     /note="Zap helix turn helix N-terminal domain; pfam18606"
                     /db_xref="CDD:465819"
     Region          338..403
                     /region_name="WWE"
                     /note="WWE domain; pfam02825"
                     /db_xref="CDD:460715"
     CDS             1..453
                     /gene="LOC104062833"
                     /coded_by="XM_054058882.1:92..1453"
                     /db_xref="GeneID:104062833"
ORIGIN      
        1 msdpavscyl tktlcaqggr lplpelqrri glsapqlrdt laaagterfl llldgdarvl
       61 alaplrvcvr kecggcerlh lckshvlgrc rlgarscnys hdiispenrk vlkahglssl
      121 denelrvlll qndpfflpav chfyngkndt chqqnncnkl hicqhflqgq crflpcrksh
      181 nlldahalrv leaggidvnt asniqaicyh kymelnkelk kgiskkddss akdlkedkkd
      241 nsdeiclfyv wkyckhrdkc glvhyhlpyr wqvyngvswn dlhmmeeiek dycnpknsct
      301 adniidfrtm tdgpfsvrrl stpssvtkpt fvlttqwiwy wkndqgqwie ygqqgeedsv
      361 nspssavien lyladpdati sfqaglysyd lnfkemaqtn tssrtrrrvc rrpkfvssed
      421 vqrikkgqmd ssipnqacpt hwdqsalpdf gyk
//
LOCUS       XP_009563239             466 aa            linear   VRT 09-MAR-2023
DEFINITION  tetratricopeptide repeat protein 38 [Cuculus canorus].
ACCESSION   XP_009563239
VERSION     XP_009563239.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009564944.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009563239.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..466
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..466
                     /product="tetratricopeptide repeat protein 38"
                     /calculated_mol_wt=52516
     Region          57..420
                     /region_name="StaR_like"
                     /note="a well-conserved protein found in bacteria, plants,
                     and animals. A family member from Streptomyces
                     toyocaensis, StaR is part of a gene cluster involved in
                     the biosynthesis of glycopeptide antibiotics (GPAs),
                     specifically A47934. It has been speculated...; cd05804"
                     /db_xref="CDD:100115"
     CDS             1..466
                     /gene="TTC38"
                     /coded_by="XM_009564944.2:75..1475"
                     /db_xref="GeneID:104062824"
ORIGIN      
        1 marlrdckaw qdaglalstt sneacklfda vltqyatwgn deslggiegc lsklkaadpn
       61 fimghviang leligtgssv rlnkeldsam rtmmtlsksq pltereklhv saldmfasgq
      121 lpkacdlweq vlqshptdll alrfsqdayf ylgyqiqmrd svarvypfwt pdvplssyvk
      181 gyysfglmet nlfdraeela realainptd awsvhtiahv nemkaevkkg lefmketetn
      241 wknsdilach nywhwalyfi ekgeyeaalt iydnhiaprc lssgnmldiv dntsmlyrlh
      301 legvklgdrw nyvlqltkkh tkdhvllfnd vhilmsslga kdhkttdell ttlqelakap
      361 redhelslap rlglplcqaf vefengncdk avdllypiry eliqiggsna qrdvfsqlli
      421 haalnsksqa kqnlarcllr erdvmrpnsp mterlirkaa avhsla
//
LOCUS       XP_053914879            3074 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: serine-protein kinase ATM [Cuculus canorus].
ACCESSION   XP_053914879
VERSION     XP_053914879.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058904.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3074
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3074
                     /product="LOW QUALITY PROTEIN: serine-protein kinase ATM"
                     /calculated_mol_wt=350504
     Region          8..164
                     /region_name="TAN"
                     /note="Telomere-length maintenance and DNA damage repair;
                     pfam11640"
                     /db_xref="CDD:463317"
     Region          2110..2505
                     /region_name="FAT"
                     /note="FAT domain; pfam02259"
                     /db_xref="CDD:396714"
     Region          <2508..3073
                     /region_name="TEL1"
                     /note="Phosphatidylinositol kinase or protein kinase, PI-3
                     family [Signal transduction mechanisms]; COG5032"
                     /db_xref="CDD:227365"
     Region          2701..2980
                     /region_name="PIKKc_ATM"
                     /note="Catalytic domain of Ataxia Telangiectasia Mutated;
                     cd05171"
                     /db_xref="CDD:270715"
     Site            order(2711,2713..2715,2717,2733,2735,2738,2773,2785..2788,
                     2793,2893,2895,2906..2907)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270715"
     Site            2885..2893
                     /site_type="active"
                     /note="catalytic loop [active]"
                     /db_xref="CDD:270715"
     Site            2907..2929
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270715"
     CDS             1..3074
                     /gene="ATM"
                     /coded_by="XM_054058904.1:158..9382"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /db_xref="GeneID:104055336"
ORIGIN      
        1 mslalhdllv ccrrleneka lerrkeienf krllrdpeti lqldrnsdsk qgkqvnwdav
       61 fsvlqkyfqk emknlqltkp nasastqtmr qkkmqevgsl vkyfircank rgprlkcqel
      121 liyvmeiird qascaaygsd cssillkdil svrkywceis qkqwsellil ygqlylkpsg
      181 kinrvlvari ihtltrgycf qtdklssdml iffskamqca rqekntagld hivgamsifc
      241 nkfavncrir ickageeilp tmlyictqyr pkdslkesii elfrlqvhih hpkgaktqdk
      301 gaydstkwrs ilhnlydllv neinligsrg ryssgsrnia vkenlielma dichqvfaed
      361 tkvleitqsy aisqressde agpskrrrie lgwevirdnl qrsqkdfdvi pwlqitarli
      421 skypmslpns ellpllnvlh qllpqqrrge rtpyvlkclt evalcqtqkt dvknaqrlel
      481 qktwakiwsl tirsisfqqt evesfgllga miqgnlvvtd kdlwkifsgp ackpsssavc
      541 clslvmstys vpenldvgme qnncernlns llketimkwi lsccleeeme ecaelppvlc
      601 sdfphlivqn ilvsltmknn raamiffqnd akcvqhlqgk eensfsevee lylqttfdem
      661 diftdiavnv adknvtgsrl ainqnlretl encllsmsek llssyspksk fvaaehlvrc
      721 vtlligvlgc ycytgilkee dackselfqk akslihyage siaqsknkln edahinslrt
      781 limqctkclc nctknsankm lssiflrlls skfmndlvdi ckslmavpgk pselgegdlm
      841 gddpeesime vdnqvsddlf ddhsvtdisd tnesgemqnv tgalsplaee qltkqdllll
      901 eilrflcicv tnvqiqtlsf rasdirrkll mltdrsvfds akplhlhmyl vllkelpvee
      961 hllpeddilt llrplstvcs lyrrdqevck vilnnllpia aglarsnaht eetglargql
     1021 lkvvgafwyl sqggectapv rvallncmka lleadphckw ailnvvnedl pvsdafprfl
     1081 tdshhqvril aaksitslfq dvkqrdssgm skplplklqq kafenaylrv qegmrnlvtg
     1141 despedlldk qcngkagllm litmvlccsp vcekqalfai cqsvkengle phlvkkvlkk
     1201 vsdifgykst edfmtshldy lvmewlrind sgyslsafpy vllnytslee fyrscykvlv
     1261 phlvirsqfe dvkslankie kdwrqvladc fpkilvnilp yfayqshgki evaeqqdtas
     1321 kvydmlkden clgkqqidnl shnnlpeivv ellmtlhepp dntveegahl skyireldpa
     1381 pnpphfpsfv ikatldyisn chksklkslv avlskspdsf qkillalckh asdtnniykk
     1441 hrvliiyhlf vslllkeird glggawafvl rdviytlihh innrpvifrd vsmrsfslcc
     1501 dllhyvchia vtcckdales hlhvivgtli plvpnamdqp eiqeqvlgll kylvvdnkdn
     1561 enlyhaikcl dpfpeypafk dlratqqkik yskgpyslle einhflsvgv cdslpvtrle
     1621 glydlrkkle qykdqmkdll knfqenpeds aivklvvsll qlskmavnht gekavleavg
     1681 sclgeigpmd fstialqhae naldskaadl lekkklqwvf imltqinval tdncidvraa
     1741 avsclknila tesgcefwev ykdkadpmli ylqpfrisrk kcfvvptket eaplegldda
     1801 nlwipvgesh etwikhltss ildsggvrne vlqlmkplce vktdlcqtll pylihdillh
     1861 dsdeswrnll svhiqkffta ccrfaspsrs ttppnsdseq ethnfksldk vsrramlavv
     1921 dylrrqkrsl sgtvfddsfw ldlnyievai aaqscaahft allyaeiyad kintdkqqer
     1981 ssfkaakslt feeesqrsti sildekskee tgislqdllm diyrsigepd slygcgggrm
     2041 lqplarirty eheavwekal vtydletslp pstrqagiie alqnfglcht lsmylkgleh
     2101 entewcaklq eiryqaawrn mqwghissvk detgrpgyhe slydalqslr dkefsafyds
     2161 lkdarvneve elckgslesv yslyptlcrl qligelenig llfsrsvttq qlndiylkwq
     2221 rhsqllkdsd frfqepimal rtvileille keientkrec ikdiltkhlv elsrlartak
     2281 ntqlperamf qikqynpagy avsewqleea qvfwakkees lalnilkgmi kkldadwfqv
     2341 endphlklmy teclrlcgtw laetclenpt vimqkyleka veiaashsgd ssddlkkgkm
     2401 kaflslarfs dnqyqrieny mkssefenkq allkkakeev glimerrvqt nrytvkvqre
     2461 lkldecaiha ltedrkrflc kavenyiscl lsgeehdmwi frlcslwlen sgvdrvnemm
     2521 kknaekipsy kflplmyqla armgtkmmgg lgfhevlnnl msrvsrdhph hslfiilala
     2581 naskdelltk pdairrnkli knvpkeisql dvdrmeaasn iinivrkkra rmvrdiealc
     2641 dayitlanld atpwkthrft egisipadqp iiklknledv vvptmeikvd ptgqyenlvt
     2701 irsfkpefrl agglnlpkii dcvgsdgker rqlvkgrddl rqdavmqqvf qmcntllqqn
     2761 tetrkrklti rrykvvplsq rsgvlewcsg ttpigeflvn vhkgahkryr pkdycasqcq
     2821 kimmdaqkkr peekysifmk vcenfqpvfr yfcmekfldp avwfekrlay irsvatssiv
     2881 gyilglgdrh vqnilideqt aelvhidlgv afeqgkvlpt petvpfrltr dvvdgmgitg
     2941 vegvfrrcce ktmavmrnsq ealltivevl lydplfdwtm nplkalylqq rpedeadmss
     3001 tlgtdpqehk rkassddqsf nkvaervlmr lqeklkgvee gtvlnvggqv nlliqqamdp
     3061 knlsqlfpgw kawv
//
LOCUS       XP_053914891            1513 aa            linear   VRT 09-MAR-2023
DEFINITION  protein NPAT [Cuculus canorus].
ACCESSION   XP_053914891
VERSION     XP_053914891.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058916.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1513
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1513
                     /product="protein NPAT"
                     /calculated_mol_wt=163848
     Region          846..1513
                     /region_name="NPAT_C"
                     /note="NPAT C terminus; pfam15712"
                     /db_xref="CDD:434876"
     CDS             1..1513
                     /gene="LOC104055355"
                     /coded_by="XM_054058916.1:31..4572"
                     /db_xref="GeneID:104055355"
ORIGIN      
        1 mrrprlpveg agrgagwwsf rafplgagap rgpgwvcvpl plpcgpprpl ramllpsdva
       61 rlvlgylqqe kllatcrefi lessdlkeya ehctedgfip acllslcgkn lttilneyva
      121 mktkettnev pammsslwkk ldytlsqirs mqnstgfsan qrtrtrsgiv emkrqrmlqq
      181 sapansglls vahqsgpqns ssvvspqvih rpvinqslsq prlntlfvhq sqtqenkfst
      241 gefihiqvpa sqerklhsnl lspgrrkses qkrksvatsg plsatrssqd pdeliiekes
      301 epleefidgn fpqlvienar ekilsnkslq eklaeninki lgsdgnvaqa pkqtdsgpte
      361 qetsideilg lqgeihmsee aiqdileqte sdpafqalfd lfdygkskvn knlpagisgq
      421 sgvenailvd ednletless lgteetsrcd nsrellsckg fqlgeascal ktnindhdtt
      481 kkntnheqlh gncrprkqte vlktvtsehi geleisfdsv pgltelnkrq ssdgecseqc
      541 gesydkresp vvvsdseram eiekgplshg aesspnleyt hsghsqitlv slaegttase
      601 nkthsgskch lspdtslpek tlakspsdgs pghsillrkn nslvsspsad tekeqaitnd
      661 ttalagvlqe nschhsdhqe qsmqsdcaar savkisnpdk telqlevvdt snkpysndqq
      721 tldkpykkdi nlpsglsnse gtqvemqeps sstkvdadni yfssddqact eisvvstenn
      781 lttseichsp lpetasstde sgteaksisg vssssqpmdv dpsnimslki iisddpfiss
      841 dtelnnavss itgeslptii lsspakspsk stglskclss edteksvdsa laeqnlllfr
      901 pkdpvvtlgn sqnedgsvfs vadktnlske ggfiqlmptt stafgnsnnl yiatcvtdpa
      961 vtpsnvvvlp snsmplaaqt pavqqlrtpl rssnsfaanq pvspnfsqgs aiiiaspvqp
     1021 vlqgmvgmip lsvvgqngnt fsaparqvlh mpvtnpvcsr svpklpippk sqkipgarnk
     1081 tntgklvpsv aeplnhtnsr mqrtgnsdrl itaelgrkve enllvapges tssnsrpses
     1141 hrrvlcfdni lptsggntqi qttkslcqke rnentvfavd sasssakaql akrekdktlp
     1201 rilckpevgs nrsasakepq perkaataap pldpfhktta nkenelrrdt dekqknqdta
     1261 klsngqqsvs lwnektvasv qelnkkqgsl sngtskssvs vslsskepkr esgkvsnqgl
     1321 clsspftkqc vemlqdiqwh sptsktveng elpvprtpsg vgdrhtddtt dsvrtptcrr
     1381 fnedsttpri mvppatpdlp acspasetgs ensvsmaaht lmilsraaia rtstatplkd
     1441 ntqqfrslrs tvkkrkledl nesernsrss nrkelqsspt pskkkkikkk klpnsfpagm
     1501 dvdkfllslh yde
//
LOCUS       XP_053914898            1271 aa            linear   VRT 09-MAR-2023
DEFINITION  regulator of nonsense transcripts 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053914898
VERSION     XP_053914898.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058923.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1271
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1271
                     /product="regulator of nonsense transcripts 2 isoform X1"
                     /calculated_mol_wt=147481
     Region          167..362
                     /region_name="MIF4G"
                     /note="Middle domain of eukaryotic initiation factor 4G
                     (eIF4G); smart00543"
                     /db_xref="CDD:214713"
     Region          357..>420
                     /region_name="DUF1451"
                     /note="Zinc-ribbon containing domain; cl19727"
                     /db_xref="CDD:450347"
     Region          570..757
                     /region_name="MIF4G"
                     /note="Middle domain of eukaryotic initiation factor 4G
                     (eIF4G); smart00543"
                     /db_xref="CDD:214713"
     Region          775..985
                     /region_name="MIF4G"
                     /note="MIF4G domain; pfam02854"
                     /db_xref="CDD:397130"
     Region          1094..1217
                     /region_name="Upf2"
                     /note="Up-frameshift suppressor 2; pfam04050"
                     /db_xref="CDD:461146"
     CDS             1..1271
                     /gene="UPF2"
                     /coded_by="XM_054058923.1:79..3894"
                     /db_xref="GeneID:104066295"
ORIGIN      
        1 mpaerkkpan meekesplnn kerefserrp vstrekpked akvgvkretl kvpedkkkkl
       61 dedkkkkedk erkkkeedkv kaeeeqkkke eeekkkleee ekkkqeeeek kkqeeaaaql
      121 kekeeahqlh qeawerhqar kelrsknqna pdnrpeenff srldsslkkn tafvkklkti
      181 teqqrdslsh dfnslnlsky iaeavasive aklkisdvnc avhlcslfhq ryadfapsll
      241 qawkkhfear keektpnitk lrtdlrfiae ltivgiftdk eglsliyeql kniinadres
      301 hthvsvvisf crhcgddiag lvprkvktva ekfnlsfpps eiispekqqp fqnllkeyft
      361 sltkhlkrdh relqnierqn rrilhskgel sedrhkqyee famsyqklla nsqsladlld
      421 enmpdlpqek ptpeehgpgi diftpgkpge ydleggiwed edarnfyenl idlkafvpai
      481 lfkdnekcsq nkdsgkdesr dskdakdnke apgsedlele lenldinddp leldcgdeae
      541 dltkklldeq eqedeeastg shlklivdaf lqqlpncvnr dlidkaamdf cmnmntkanr
      601 rklvralfiv prqrldllpf yarlvatlhp cmsdvaedlc smlkgdfrfh vrkkdqinie
      661 tknktvrfig eltkfkmfsk ndtlhclkml lsdfshhhie mactlletcg rflfrspesh
      721 lrtsvlleqm mrkkqamhld aryvtmvena yyycnpppae ktvkkkrppl qeyirkllyk
      781 dlskvttekv lrqmrklpwq daevkdyvic cminiwnvky nsihcvanll aglvlyqedv
      841 gihvvdgvle dirlgmevnq pkfnqrriss akflgelyny rmvesavifr tlysftsfgv
      901 npdgspspld ppehlfrirl vctildtcgq yfdrgsskrk ldcflvyfqr yvwwkksldv
      961 wtkdhpfpid idymisdtle llrpkiklcs sleeavrqvq dlereflikl givndkdskd
     1021 sitegenlee deeeeeggae teeqsgnese vnepeeeegs dneeeegeee eeentdyltd
     1081 snkenetdee ntevmikggg lkhvpcaede dfiqaldkmm lenlqqrsge svkvhqldva
     1141 iplhlksqlk kgpplgsgeg esesgdtmpf vmltrkgnkq qfkilnvpms sqlaanhwnq
     1201 qqaeqeermr mkkltldine rqeqedyqem lqslaqrpap antnrerrpr yqhpkgapna
     1261 dlifktggrr r
//
LOCUS       XP_053914911            1269 aa            linear   VRT 09-MAR-2023
DEFINITION  regulator of nonsense transcripts 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053914911
VERSION     XP_053914911.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058936.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1269
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1269
                     /product="regulator of nonsense transcripts 2 isoform X2"
                     /calculated_mol_wt=147169
     Region          167..362
                     /region_name="MIF4G"
                     /note="Middle domain of eukaryotic initiation factor 4G
                     (eIF4G); smart00543"
                     /db_xref="CDD:214713"
     Region          357..>420
                     /region_name="DUF1451"
                     /note="Zinc-ribbon containing domain; cl19727"
                     /db_xref="CDD:450347"
     Region          570..757
                     /region_name="MIF4G"
                     /note="Middle domain of eukaryotic initiation factor 4G
                     (eIF4G); smart00543"
                     /db_xref="CDD:214713"
     Region          775..985
                     /region_name="MIF4G"
                     /note="MIF4G domain; pfam02854"
                     /db_xref="CDD:397130"
     Region          1094..1217
                     /region_name="Upf2"
                     /note="Up-frameshift suppressor 2; pfam04050"
                     /db_xref="CDD:461146"
     CDS             1..1269
                     /gene="UPF2"
                     /coded_by="XM_054058936.1:19..3828"
                     /db_xref="GeneID:104066295"
ORIGIN      
        1 mpaerkkpan meekesplnn kerefserrp vstrekpked akvgvkretl kvpedkkkkl
       61 dedkkkkedk erkkkeedkv kaeeeqkkke eeekkkleee ekkkqeeeek kkqeeaaaql
      121 kekeeahqlh qeawerhqar kelrsknqna pdnrpeenff srldsslkkn tafvkklkti
      181 teqqrdslsh dfnslnlsky iaeavasive aklkisdvnc avhlcslfhq ryadfapsll
      241 qawkkhfear keektpnitk lrtdlrfiae ltivgiftdk eglsliyeql kniinadres
      301 hthvsvvisf crhcgddiag lvprkvktva ekfnlsfpps eiispekqqp fqnllkeyft
      361 sltkhlkrdh relqnierqn rrilhskgel sedrhkqyee famsyqklla nsqsladlld
      421 enmpdlpqek ptpeehgpgi diftpgkpge ydleggiwed edarnfyenl idlkafvpai
      481 lfkdnekcsq nkdsgkdesr dskdakdnke apgsedlele lenldinddp leldcgdeae
      541 dltkklldeq eqedeeastg shlklivdaf lqqlpncvnr dlidkaamdf cmnmntkanr
      601 rklvralfiv prqrldllpf yarlvatlhp cmsdvaedlc smlkgdfrfh vrkkdqinie
      661 tknktvrfig eltkfkmfsk ndtlhclkml lsdfshhhie mactlletcg rflfrspesh
      721 lrtsvlleqm mrkkqamhld aryvtmvena yyycnpppae ktvkkkrppl qeyirkllyk
      781 dlskvttekv lrqmrklpwq daevkdyvic cminiwnvky nsihcvanll aglvlyqedv
      841 gihvvdgvle dirlgmevnq pkfnqrriss akflgelyny rmvesavifr tlysftsfgv
      901 npdgspspld ppehlfrirl vctildtcgq yfdrgsskrk ldcflvyfqr yvwwkksldv
      961 wtkdhpfpid idymisdtle llrpkiklcs sleeavrqvq dlereflikl givndkdskd
     1021 sitegenlee deeeeeggae teeqsgnese vnepeeeegs dneeeegeee eeentdyltd
     1081 snkenetdee ntevmikggg lkhvpcaede dfiqaldkmm lenlqqrsge svkvhqldva
     1141 iplhlksqlk kgpplgsgeg esesgdtmpf vmltrkgnkq qfkilnvpms sqlaanhwnq
     1201 qqaeqeermr mkkltldine rqeqedyqem lqslaqrpap antnrerrpr yqhpkgapna
     1261 dlifktggr
//
LOCUS       XP_053914928            1797 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear pore complex protein Nup98-Nup96 [Cuculus canorus].
ACCESSION   XP_053914928
VERSION     XP_053914928.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058953.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1797
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1797
                     /product="nuclear pore complex protein Nup98-Nup96"
                     /calculated_mol_wt=195839
     Region          7..>439
                     /region_name="COG4625"
                     /note="Uncharacterized conserved protein, contains a
                     C-terminal beta-barrel porin domain [Function unknown]"
                     /db_xref="CDD:443664"
     Region          49..161
                     /region_name="Nucleoporin_FG"
                     /note="Nucleoporin FG repeat region; pfam13634"
                     /db_xref="CDD:463941"
     Region          725..867
                     /region_name="Nucleoporin2"
                     /note="Nucleoporin autopeptidase; pfam04096"
                     /db_xref="CDD:461171"
     Region          1312..1603
                     /region_name="Nup96"
                     /note="Nuclear protein 96; pfam12110"
                     /db_xref="CDD:463462"
     CDS             1..1797
                     /gene="NUP98"
                     /coded_by="XM_054058953.1:162..5555"
                     /db_xref="GeneID:104055914"
ORIGIN      
        1 mfnksfgtpf ggstgfgtts tfgqnagfgt tsggafgtsa fgsnnntggl fgstqtkpgg
       61 lfgsttfnqp atsststgfg fgtstgtsns lfgttstggg lfssqsnafa qnkpagfgnf
      121 gtstssgglf gttnttsnpf gstsgslfgp tsftaaltgt tikfnpptgt dtmvksgvst
      181 nintkhqcit amkeyesksl eelrledyqa nrkgpsnpvg agaaaglfgs statsstatg
      241 lfgssttntg fsygqnktaf gtsttgfgtg ttgglfgqqs qttslfnkpf gqatttqntg
      301 fsfgntstlg qpntntmglf gvtqpsqpgg lfgtatntna gtgfgtgtgl fgqantgfgv
      361 ggstlfgnkp agfgttttsa psfgtttggg lfgfgantag nslfgnkpat gtlgtglgtg
      421 fgtalgagqt slfgntqpkl ggtlgtgtfg apgfntstat lgfgapqpav altdpnasaa
      481 qqavlqqhln sltyspfgds plfrnpmsdp kkkeerlkpt npaaqkaltt pthykltprp
      541 atrvrpkalq sagsakshlf dgldddepsl sngafmpkks ikklvlknln ssnlfspvnr
      601 enddlaspse ypengdrffv svppdenhrq dgereeeeed hhevtrfytn piakpipqtp
      661 ensvhkqqns lddtvvalnm raalrngleg ssedasfhdd slqdereeep etvyhqhpag
      721 ivltragyyt ipsmeelarl tndrnecivt dftigrkgyg siyfegevnl tnlnldeivh
      781 irrkevivyp dderkppige glnrraevtl dgvwptdkts rcliksperl aemnyegrle
      841 svsrkqgarf keyrpetgsw vfkvahfsky glqdsdeeee ehpskvdtkk lkttpvlppg
      901 hlppqqmaln gkpappsqpp emeqlgrvve ldsdmaditq eppqesvved drteepeavp
      961 asthiastlg inphvlqimk aslladeddl dlildcypgk qalkmntyqe icsprlpisk
     1021 sqgqkrysvg gllqskfanv ifqppsaapq dlsgprtlss plptapwsva splasafsvp
     1081 psvpevqmkt vgvrgqqelv pleksitygk gkllmdmalf mgrsfrvgwg pnwtlvncgd
     1141 qlsessemed vqcesvqygf lpapvapksl sessfkvhve klsleqrkvd kqlyliplei
     1201 klkhstvhmd ehcpllapnp gvsaihdyad wirkasedpg vaetvvkhwc ltwtlceaiw
     1261 gnlkeleasl eepseyiltl errkafsrwl setaarriee evslsrhgnh veavfscltg
     1321 krigeacrla qqsgdhrlal llsqlagsqp vrdlltmqlv dwhrlqadcf iqeerlrifa
     1381 llagkpvwql serisinvcs lldwkrcvav hlwyllppta siskalamye safqntsese
     1441 kyaccplppy ledsgfvved nnntgrplrd vcfhllklys drhydldqll dprsvtsdpl
     1501 dyrlswhlwe vlralnythl fkqsqgvlna sfaaqleseg lwewavfill hepdtyirek
     1561 avrellnrhc ilsgtpeswa ketfltqhlc vplewiheak avrarmegdk hkealflfka
     1621 ghwnqchklv vrhlasdaii nenykylkgf ledlalpers aliqdwetag lvyldyirvi
     1681 emldriqqld cstyelerlh tkvtslcnri eqiqchsvkd rlaqsdmakr ianllrvvls
     1741 lqhapepvsd smpdlqrvpl rllaphigrl pmpedyalee lrsltqsylq eltvvth
//
LOCUS       XP_053914941             523 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal acetylcholine receptor subunit alpha-10 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053914941
VERSION     XP_053914941.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058966.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..523
                     /product="neuronal acetylcholine receptor subunit alpha-10
                     isoform X1"
                     /calculated_mol_wt=57979
     Region          109..519
                     /region_name="LIC"
                     /note="Cation transporter family protein; cl42365"
                     /db_xref="CDD:455710"
     Region          119..299
                     /region_name="LGIC_ECD_nAChR_A10"
                     /note="extracellular domain of neuronal acetylcholine
                     receptor subunit alpha 10 (CHRNA10); cd19023"
                     /db_xref="CDD:349824"
     Site            order(129,131,137..138,145,167,169,178..179,181,183..184,
                     188,190..191,195..197,199,209,211,213,217,239,299)
                     /site_type="other"
                     /note="pentamer interface [polypeptide binding]"
                     /db_xref="CDD:349824"
     Region          218..232
                     /region_name="Cys-loop"
                     /note="Cys-loop [structural motif]"
                     /db_xref="CDD:349824"
     CDS             1..523
                     /gene="CHRNA10"
                     /coded_by="XM_054058966.1:2072..3643"
                     /db_xref="GeneID:104055982"
ORIGIN      
        1 mgsmwlsala qlhptpqvps pcqvpdplgl lptavltapk lmlpgglcpl ppisrhipsl
       61 tspqhvqvaq phfcvprdlh ragaqqdgaq ssrtahplpc qlpsgpsalr pvedtdraln
      121 vtlqvtlsqi idmdernqvl tsylwvrqaw ldahltwdkd aydgidsiri pssyvwrpdi
      181 ilynnaddhf ggsmetnvvl rsdglimwds paitkssckv dvsyfpfdgq qchltfgswt
      241 yngnqidlhn rldtgdlrdf venvewevlg mpatrnvity gccsepypdv tytlllrrra
      301 sfyvfnlllp cimvsllapl sfylpadsge kvslgvtvll altvfqllva esmppsesvp
      361 ligkyyiatm tmitastalt ifimnvhhcg pgarpvppwa rrlilhhmaq lccvyevges
      421 cktprrvlsg qmgkrdagds gespvereeg aevggcprdc clchhdsllr nvgyiascfr
      481 hhraaqrrtg ewkkvakvmd rffmwvfflm vilmsmlvlg kaa
//
LOCUS       XP_009555482             459 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal acetylcholine receptor subunit alpha-10 isoform X2
            [Cuculus canorus].
ACCESSION   XP_009555482
VERSION     XP_009555482.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557187.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555482.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..459
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..459
                     /product="neuronal acetylcholine receptor subunit alpha-10
                     isoform X2"
                     /calculated_mol_wt=51410
     Region          8..455
                     /region_name="LIC"
                     /note="Cation transporter family protein; cl42365"
                     /db_xref="CDD:455710"
     Region          30..236
                     /region_name="LGIC_ECD"
                     /note="extracellular domain (ECD) of Cys-loop
                     neurotransmitter-gated ion channels (also known as
                     ligand-gated ion channel (LGIC)); cl28912"
                     /db_xref="CDD:475126"
     Site            order(65,67,73..74,81,103,105,114..115,117,119..120,
                     131..133,135,145,147,149,153,175,235)
                     /site_type="other"
                     /note="pentamer interface [polypeptide binding]"
                     /db_xref="CDD:349787"
     CDS             1..459
                     /gene="CHRNA10"
                     /coded_by="XM_009557187.2:2331..3710"
                     /db_xref="GeneID:104055982"
ORIGIN      
        1 meprargllt lclascllap gcwgaqgrva ykllhnlfan yssalrpved tdralnvtlq
       61 vtlsqiidmd ernqvltsyl wvrqawldah ltwdkdaydg idsiripssy vwrpdiilyn
      121 naddhfggsm etnvvlrsdg limwdspait kssckvdvsy fpfdgqqchl tfgswtyngn
      181 qidlhnrldt gdlrdfvenv ewevlgmpat rnvitygccs epypdvtytl llrrrasfyv
      241 fnlllpcimv sllaplsfyl padsgekvsl gvtvllaltv fqllvaesmp psesvpligk
      301 yyiatmtmit astaltifim nvhhcgpgar pvppwarrli lhhmaqlccv yevgescktp
      361 rrvlsgqmgk rdagdsgesp vereegaevg gcprdcclch hdsllrnvgy iascfrhhra
      421 aqrrtgewkk vakvmdrffm wvfflmvilm smlvlgkaa
//
LOCUS       XP_053914953             439 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal acetylcholine receptor subunit alpha-10 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053914953
VERSION     XP_053914953.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058978.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..439
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..439
                     /product="neuronal acetylcholine receptor subunit alpha-10
                     isoform X3"
                     /calculated_mol_wt=48491
     Region          119..299
                     /region_name="LGIC_ECD"
                     /note="extracellular domain (ECD) of Cys-loop
                     neurotransmitter-gated ion channels (also known as
                     ligand-gated ion channel (LGIC)); cl28912"
                     /db_xref="CDD:475126"
     Site            order(129,131,137..138,145,167,169,178..179,181,183..184,
                     195..197,199,209,211,213,217,239,299)
                     /site_type="other"
                     /note="pentamer interface [polypeptide binding]"
                     /db_xref="CDD:349787"
     Region          301..>388
                     /region_name="LGIC_TM_cation"
                     /note="transmembrane domain of Cys-loop
                     neurotransmitter-gated ion channels, includes 5HT3, nAChR,
                     and ZAC; cd19051"
                     /db_xref="CDD:349853"
     Region          301..325
                     /region_name="TM1 helix"
                     /note="TM1 helix [structural motif]"
                     /db_xref="CDD:349853"
     Region          333..354
                     /region_name="TM2 helix"
                     /note="TM2 helix [structural motif]"
                     /db_xref="CDD:349853"
     Region          364..386
                     /region_name="TM3 helix"
                     /note="TM3 helix [structural motif]"
                     /db_xref="CDD:349853"
     CDS             1..439
                     /gene="CHRNA10"
                     /coded_by="XM_054058978.1:2072..3391"
                     /db_xref="GeneID:104055982"
ORIGIN      
        1 mgsmwlsala qlhptpqvps pcqvpdplgl lptavltapk lmlpgglcpl ppisrhipsl
       61 tspqhvqvaq phfcvprdlh ragaqqdgaq ssrtahplpc qlpsgpsalr pvedtdraln
      121 vtlqvtlsqi idmdernqvl tsylwvrqaw ldahltwdkd aydgidsiri pssyvwrpdi
      181 ilynnaddhf ggsmetnvvl rsdglimwds paitkssckv dvsyfpfdgq qchltfgswt
      241 yngnqidlhn rldtgdlrdf venvewevlg mpatrnvity gccsepypdv tytlllrrra
      301 sfyvfnlllp cimvsllapl sfylpadsge kvslgvtvll altvfqllva esmppsesvp
      361 ligkyyiatm tmitastalt ifimnvhhcg pgarpvppwa rrlilhhmaq lccvyepaee
      421 cwlhcqllpa ppsspapdr
//
LOCUS       XP_053914964            1175 aa            linear   VRT 09-MAR-2023
DEFINITION  insulin receptor substrate 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053914964
VERSION     XP_053914964.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058989.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1175
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1175
                     /product="insulin receptor substrate 2 isoform X1"
                     /calculated_mol_wt=123567
     Region          31..139
                     /region_name="PH_IRS"
                     /note="Insulin receptor substrate (IRS) pleckstrin
                     homology (PH) domain; cd01257"
                     /db_xref="CDD:269959"
     Region          183..286
                     /region_name="PTB_IRS"
                     /note="Insulin receptor substrate phosphotyrosine-binding
                     domain (PTBi); cd01204"
                     /db_xref="CDD:269915"
     Site            order(192,194,200)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:269915"
     Site            order(231..241,245,249..250,260,270,273,277,280..281,
                     283..284)
                     /site_type="other"
                     /note="phosphopeptide binding site [polypeptide binding]"
                     /db_xref="CDD:269915"
     CDS             1..1175
                     /gene="IRS2"
                     /coded_by="XM_054058989.1:153..3680"
                     /db_xref="GeneID:128851265"
ORIGIN      
        1 massavlgll pplssppgpn lnnnnnnnnq gvrkcgylrk qkhghkrffv lrgpgsgeea
       61 ggarleyyes ekkwrnksga pkrvialdsc lninkradak hkylialytk deyfavaaen
      121 eqeqegwyra ltdllnegka acqgsphrhl aspfsascsa aaaslaaged lnyglitpaa
      181 aayrevwqvt lkpkglgqsk nltgvhrlcl sartigfvrl ncelpsvtlq lmnirrcghs
      241 dsfffievgr saatgpgelw mqaddsvvaq nihetileam kalkelsefr prsksqssss
      301 sssggaagtg sgasathpit vpgrrhhhlv nlppsqtgll rrsrtdslaa gtgtkctpcr
      361 vrtasegdgc rvgsvagspv spgpvrtpls rshtlssggg rqagkllpvl aggglqnsrs
      421 msmptshspp satspislss ssglgsepvh phhsqrpssg sasvsgspsd agfmsfdeyg
      481 sspggdlrpf sssstasnrs ntpesvaetp pvrepgggtd lygymamerp psgrlcyrpc
      541 pdsvgdrghr krtyslttpc rqrsappqvs sasldeytlm ratfagsagr lfpscqagas
      601 pkvtytpype dygdieigsh rssgssstnl gpptaagggg vgedddgymp mtpgvaatlg
      661 qgsrggddym pmsptsvsap kqilqprvgv gdgspgngss yktsspgess pddsgymrmw
      721 cgsklsvess dgrlsngdyi nmsprdphhg aqapsltppd fffapsghgs seppkpgcys
      781 ysslprsyks qgpakdndqy vfmnspgrmi leetvcgagq spastsapss hmvpsplrhs
      841 rtesflsqrc qrvarpsrls letlrtmlps mnehplppep kspgeyinid fgdaavyspp
      901 slpadspass lgsgtgqrrs plsdymnidf gsqspsqsgt vsvgsleals pgsssgtsqp
      961 dgrylkavev aclsspsdgg dytemtfgma ttppqpivqk pesarvasat agvkrltlsg
     1021 veafilsnpp pdpnrgakvi radpqgrrrh ssetfssttt vtpvspsfah npkrhnsasv
     1081 envslrkseg leeeqgsspm cretsagfqn glnyiaidvm dgtlancdka rskarhvlng
     1141 gingvemsay asidflshnl keasavkgst grwkr
//
LOCUS       XP_053914972            1168 aa            linear   VRT 09-MAR-2023
DEFINITION  insulin receptor substrate 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053914972
VERSION     XP_053914972.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054058997.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1168
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1168
                     /product="insulin receptor substrate 2 isoform X2"
                     /calculated_mol_wt=122767
     Region          31..139
                     /region_name="PH_IRS"
                     /note="Insulin receptor substrate (IRS) pleckstrin
                     homology (PH) domain; cd01257"
                     /db_xref="CDD:269959"
     Region          183..286
                     /region_name="PTB_IRS"
                     /note="Insulin receptor substrate phosphotyrosine-binding
                     domain (PTBi); cd01204"
                     /db_xref="CDD:269915"
     Site            order(192,194,200)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:269915"
     Site            order(231..241,245,249..250,260,270,273,277,280..281,
                     283..284)
                     /site_type="other"
                     /note="phosphopeptide binding site [polypeptide binding]"
                     /db_xref="CDD:269915"
     CDS             1..1168
                     /gene="IRS2"
                     /coded_by="XM_054058997.1:153..3659"
                     /db_xref="GeneID:128851265"
ORIGIN      
        1 massavlgll pplssppgpn lnnnnnnnnq gvrkcgylrk qkhghkrffv lrgpgsgeea
       61 ggarleyyes ekkwrnksga pkrvialdsc lninkradak hkylialytk deyfavaaen
      121 eqeqegwyra ltdllnegka acqgsphrhl aspfsascsa aaaslaaged lnyglitpaa
      181 aayrevwqvt lkpkglgqsk nltgvhrlcl sartigfvrl ncelpsvtlq lmnirrcghs
      241 dsfffievgr saatgpgelw mqaddsvvaq nihetileam kalkelsefr prsksqssss
      301 sssggaagtg sgasathpit vpgrrhhhlv nlppsqtgll rrsrtdslaa gtgtkctpcr
      361 vrtasegdgc rvgsvagspv spgpvrtpls rshtlssggg rqagkllpvl aggglqnsrs
      421 msmptshspp satspislss ssglgsepvh phhsqrpssg sasvsgspsd agfmsfdeyg
      481 sspggdlrpf sssstasnrs ntpesvaetp pvrepgggtd lygymamerp psgrlcyrpc
      541 pdsvgdrghr krtyslttpc rqrsappqvs sasldeytlm ratfagsagr lfpscqagas
      601 pkvtytpype dygdieigsh rssgssstnl gpptaagggg vgedddgymp mtpgvaatlg
      661 qgsrggddym pmsptsvsap kqilqprvgv gdgspgngss yktsspgess pddsgymrmw
      721 cgsklsvess dgrlsngdyi nmsprdphhg aqapsltppd fffapsghgs seppkpgcys
      781 ysslprsyks qgpakdndqy vfmnspgrmi leetvcgagq spastsapss hmvpsplrhs
      841 rtesflsqrc qrvarpsrls letlrtmlps mnehplppep kspgeyinid fgdaavyspp
      901 slpadspass lgsgtgqrrs plsdymnidf gsqspsqsgt vsvgsleals pgsssgtsqp
      961 dgrylkavev aclsspsdgg dytemtfgma ttppqpivqk pesarvasat agvkrltlsg
     1021 veafilsnpp pdpnrgakvi radpqgrrrh ssetfssttt vtpvspsfah npkrhnsasv
     1081 envslrkseg leeeqgsspm cretsagfqn glnyiaidvm dgtlancdka rskarhvlng
     1141 gingvemsay asidflshnl keasavke
//
LOCUS       XP_053914983            1044 aa            linear   VRT 09-MAR-2023
DEFINITION  TSC22 domain family protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053914983
VERSION     XP_053914983.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059008.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1044
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1044
                     /product="TSC22 domain family protein 1 isoform X1"
                     /calculated_mol_wt=106474
     Region          482..>712
                     /region_name="PAT1"
                     /note="Topoisomerase II-associated protein PAT1;
                     pfam09770"
                     /db_xref="CDD:401645"
     Region          <582..>874
                     /region_name="PRK10263"
                     /note="DNA translocase FtsK; Provisional"
                     /db_xref="CDD:236669"
     Region          958..1005
                     /region_name="ZIP_TSC22D"
                     /note="leucine zipper domain found in the TSC22 domain
                     family of leucine zipper transcription factors; cd21936"
                     /db_xref="CDD:409276"
     Site            order(972..974,977,980..981,984..985,987..988,991..992,
                     994..995,998..999,1002)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:409276"
     CDS             1..1044
                     /gene="TSC22D1"
                     /coded_by="XM_054059008.1:42..3176"
                     /db_xref="GeneID:104056510"
ORIGIN      
        1 mahpamfprr gsssssgssc vtaptapgtg vgsaalsaed yqppllvqpp ppspatsssa
       61 gpqatppppq slnilsqsql qpqpltqtga qmkkksgfqi tsvtpaqisa smssnnsiae
      121 dtesyddlde shtedlssse ildvslsrat dlgepersss eetlnnfqea etpgavspnq
      181 phlpqqhvpl phhpqqsvvi ngsvhphhvh hhhhlhhhhh ghhhpshpgv gsapvsggpp
      241 pspsfrrlst tgssdnvist apvsaasstg spapvgsnir ttstpgnlgv spatgtstln
      301 nmgggsssva savlgtinls nitsgnvnal sgtssnvnvn ilsgvgngts asasvinnvt
      361 npaagmavgs sqqqpasgts rfrvvkldss sepfkkgrwt ctefydkent vavsegvavn
      421 kavetvkqnp levsserest sgssvssnvs tlshytesvg sgeigaptvv qqqafqgvgp
      481 qqmdfsgaap pampassipq svsqsqlaqv qlhsqevnyp qqkpgvqppa qaslttvtgv
      541 qpapvnilgv spslghqqpa iqsmaqqqlp ysqpaqpvqt lpvvqqqqlq ygqqqqqqqt
      601 vptqmaaghv kpvnqnsvtg ampdymqhqq ilqtpapamq pssagvgagq pvpvaqaqsm
      661 qpsvqahpaa apappvahap aaipgvgtsg qmlnvgqqgs vatvvqppsa anqipppvmp
      721 staappssqv vqpvqtgimq qglqasasgl pqqmviaqqn tllpvqpqaq gvesvvqgmt
      781 gqqlpavspv paastvpaps qagsavppgi psasiglgqp qniaqasavq ngnlaqsvsq
      841 pplistsigm pvaqsvpqqm plsstqfpaq slaqsivsqi edgrrpteps lvglpqaasg
      901 esgvgasavs dggssnipss aslfplkvlp lttplvdged esssgasvva idnkieqamd
      961 lvkshlmyav reevevlkeq ikelveknsq leqentllkt laspeqlaqf qaqlqtgspp
     1021 sssqsqgttq qpaqpasqgs gpsa
//
LOCUS       XP_053914987            1044 aa            linear   VRT 09-MAR-2023
DEFINITION  TSC22 domain family protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053914987
VERSION     XP_053914987.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059012.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1044
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1044
                     /product="TSC22 domain family protein 1 isoform X1"
                     /calculated_mol_wt=106474
     Region          482..>712
                     /region_name="PAT1"
                     /note="Topoisomerase II-associated protein PAT1;
                     pfam09770"
                     /db_xref="CDD:401645"
     Region          <582..>874
                     /region_name="PRK10263"
                     /note="DNA translocase FtsK; Provisional"
                     /db_xref="CDD:236669"
     Region          958..1005
                     /region_name="ZIP_TSC22D"
                     /note="leucine zipper domain found in the TSC22 domain
                     family of leucine zipper transcription factors; cd21936"
                     /db_xref="CDD:409276"
     Site            order(972..974,977,980..981,984..985,987..988,991..992,
                     994..995,998..999,1002)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:409276"
     CDS             1..1044
                     /gene="TSC22D1"
                     /coded_by="XM_054059012.1:431..3565"
                     /db_xref="GeneID:104056510"
ORIGIN      
        1 mahpamfprr gsssssgssc vtaptapgtg vgsaalsaed yqppllvqpp ppspatsssa
       61 gpqatppppq slnilsqsql qpqpltqtga qmkkksgfqi tsvtpaqisa smssnnsiae
      121 dtesyddlde shtedlssse ildvslsrat dlgepersss eetlnnfqea etpgavspnq
      181 phlpqqhvpl phhpqqsvvi ngsvhphhvh hhhhlhhhhh ghhhpshpgv gsapvsggpp
      241 pspsfrrlst tgssdnvist apvsaasstg spapvgsnir ttstpgnlgv spatgtstln
      301 nmgggsssva savlgtinls nitsgnvnal sgtssnvnvn ilsgvgngts asasvinnvt
      361 npaagmavgs sqqqpasgts rfrvvkldss sepfkkgrwt ctefydkent vavsegvavn
      421 kavetvkqnp levsserest sgssvssnvs tlshytesvg sgeigaptvv qqqafqgvgp
      481 qqmdfsgaap pampassipq svsqsqlaqv qlhsqevnyp qqkpgvqppa qaslttvtgv
      541 qpapvnilgv spslghqqpa iqsmaqqqlp ysqpaqpvqt lpvvqqqqlq ygqqqqqqqt
      601 vptqmaaghv kpvnqnsvtg ampdymqhqq ilqtpapamq pssagvgagq pvpvaqaqsm
      661 qpsvqahpaa apappvahap aaipgvgtsg qmlnvgqqgs vatvvqppsa anqipppvmp
      721 staappssqv vqpvqtgimq qglqasasgl pqqmviaqqn tllpvqpqaq gvesvvqgmt
      781 gqqlpavspv paastvpaps qagsavppgi psasiglgqp qniaqasavq ngnlaqsvsq
      841 pplistsigm pvaqsvpqqm plsstqfpaq slaqsivsqi edgrrpteps lvglpqaasg
      901 esgvgasavs dggssnipss aslfplkvlp lttplvdged esssgasvva idnkieqamd
      961 lvkshlmyav reevevlkeq ikelveknsq leqentllkt laspeqlaqf qaqlqtgspp
     1021 sssqsqgttq qpaqpasqgs gpsa
//
LOCUS       XP_053915005             144 aa            linear   VRT 09-MAR-2023
DEFINITION  TSC22 domain family protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053915005
VERSION     XP_053915005.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059030.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..144
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..144
                     /product="TSC22 domain family protein 1 isoform X2"
                     /calculated_mol_wt=15365
     Region          54..132
                     /region_name="ZIP_TSC22D-like"
                     /note="leucine zipper found in the TSC22 domain leucine
                     zipper transcription factors, c-Myc-binding protein, and
                     similar proteins; cl40461"
                     /db_xref="CDD:424092"
     Site            order(72,74..75,77..82,84..85,87..88,91..92,94..95,98..99,
                     101..102,105..106)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:409275"
     CDS             1..144
                     /gene="TSC22D1"
                     /coded_by="XM_054059030.1:135..569"
                     /db_xref="GeneID:104056510"
ORIGIN      
        1 mnaqccrpva mdlgvyqlrh fsisflssll gtdssslrld ssssgasvva idnkieqamd
       61 lvkshlmyav reevevlkeq ikelveknsq leqentllkt laspeqlaqf qaqlqtgspp
      121 sssqsqgttq qpaqpasqgs gpsa
//
LOCUS       XP_053915014             131 aa            linear   VRT 09-MAR-2023
DEFINITION  TSC22 domain family protein 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053915014
VERSION     XP_053915014.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059039.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..131
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..131
                     /product="TSC22 domain family protein 1 isoform X3"
                     /calculated_mol_wt=14189
     Region          41..119
                     /region_name="ZIP_TSC22D-like"
                     /note="leucine zipper found in the TSC22 domain leucine
                     zipper transcription factors, c-Myc-binding protein, and
                     similar proteins; cl40461"
                     /db_xref="CDD:424092"
     Site            order(59,61..62,64..69,71..72,74..75,78..79,81..82,85..86,
                     88..89,92..93)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:409275"
     CDS             1..131
                     /gene="TSC22D1"
                     /coded_by="XM_054059039.1:126..521"
                     /db_xref="GeneID:104056510"
ORIGIN      
        1 mkvtllrkqg sdqitmkvly leleqhlkss sgasvvaidn kieqamdlvk shlmyavree
       61 vevlkeqike lveknsqleq entllktlas peqlaqfqaq lqtgsppsss qsqgttqqpa
      121 qpasqgsgps a
//
LOCUS       XP_053915024              86 aa            linear   VRT 09-MAR-2023
DEFINITION  TSC22 domain family protein 1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053915024
VERSION     XP_053915024.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059049.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..86
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..86
                     /product="TSC22 domain family protein 1 isoform X4"
                     /calculated_mol_wt=9205
     Region          1..47
                     /region_name="ZIP_TSC22D"
                     /note="leucine zipper domain found in the TSC22 domain
                     family of leucine zipper transcription factors; cd21936"
                     /db_xref="CDD:409276"
     Site            order(14..16,19,22..23,26..27,29..30,33..34,36..37,40..41,
                     44)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:409276"
     CDS             1..86
                     /gene="TSC22D1"
                     /coded_by="XM_054059049.1:174..434"
                     /db_xref="GeneID:104056510"
ORIGIN      
        1 mdlvkshlmy avreevevlk eqikelvekn sqleqentll ktlaspeqla qfqaqlqtgs
       61 ppsssqsqgt tqqpaqpasq gsgpsa
//
LOCUS       XP_053915037             458 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 135 isoform X1 [Cuculus canorus].
ACCESSION   XP_053915037
VERSION     XP_053915037.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059062.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..458
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..458
                     /product="transmembrane protein 135 isoform X1"
                     /calculated_mol_wt=52059
     Region          9..142
                     /region_name="TMEM135_C_rich"
                     /note="N-terminal cysteine-rich region of Transmembrane
                     protein 135; pfam15982"
                     /db_xref="CDD:374269"
     Region          <299..351
                     /region_name="Tim17"
                     /note="Tim17/Tim22/Tim23/Pmp24 family; pfam02466"
                     /db_xref="CDD:460567"
     CDS             1..458
                     /gene="TMEM135"
                     /coded_by="XM_054059062.1:43..1419"
                     /db_xref="GeneID:104064200"
ORIGIN      
        1 maalsksiph gcyeightwd prcswavlhv tqgalteslr iygtlyliaa ilrkrkldyy
       61 lhkllpeilq stsfltangt lyiacfcilr kllgkfyfws pgfgaalpas ymailierks
      121 rrglltiyma nqaaetlfrm avargsitpl rhgevllfci taalfmfffr ckdglkgfty
      181 salkfivgke eipthsfspe aafskidrki khcekvsqsm nilsltrklm dkvckhgprh
      241 rcckhygdnc isycikgfir mfsigyliqc clripstfrh lftepsrlls lfynkenfql
      301 gaflgsfvsi ykgtscflrw vrnlddelha lvagclagis mmfyksttis mylasklvet
      361 iyfkgieagk vpyfphadsi iyaistsicf qaavmevqnl rpsywkfllr ltkgrfalmn
      421 rkvldvfgte asknfkdftp kldprytvvp pelplels
//
LOCUS       XP_053915050             436 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 135 isoform X2 [Cuculus canorus].
ACCESSION   XP_053915050
VERSION     XP_053915050.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059075.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..436
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..436
                     /product="transmembrane protein 135 isoform X2"
                     /calculated_mol_wt=49693
     Region          9..131
                     /region_name="TMEM135_C_rich"
                     /note="N-terminal cysteine-rich region of Transmembrane
                     protein 135; pfam15982"
                     /db_xref="CDD:374269"
     Region          <277..329
                     /region_name="Tim17"
                     /note="Tim17/Tim22/Tim23/Pmp24 family; pfam02466"
                     /db_xref="CDD:460567"
     CDS             1..436
                     /gene="TMEM135"
                     /coded_by="XM_054059075.1:45..1355"
                     /db_xref="GeneID:104064200"
ORIGIN      
        1 maalsksiph gcyeightwd prcswavlhv tqgalteslr iygtlyliaa ilrkrkldyy
       61 lhkllpeilq stsfltangt lyiacfcilr kllgkfyfws pgfgaalpas ymailierks
      121 rrglltiyma nqvllfcita alfmfffrck dglkgftysa lkfivgkeei pthsfspeaa
      181 fskidrkikh cekvsqsmni lsltrklmdk vckhgprhrc ckhygdncis ycikgfirmf
      241 sigyliqccl ripstfrhlf tepsrllslf ynkenfqlga flgsfvsiyk gtscflrwvr
      301 nlddelhalv agclagismm fyksttismy lasklvetiy fkgieagkvp yfphadsiiy
      361 aistsicfqa avmevqnlrp sywkfllrlt kgrfalmnrk vldvfgteas knfkdftpkl
      421 dprytvvppe lplels
//
LOCUS       XP_053915062             606 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier family 13 member 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053915062
VERSION     XP_053915062.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059087.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..606
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..606
                     /product="solute carrier family 13 member 1 isoform X1"
                     /calculated_mol_wt=66721
     Region          <3..168
                     /region_name="CitMHS"
                     /note="Citrate transporter; pfam03600"
                     /db_xref="CDD:460985"
     Region          90..581
                     /region_name="CitT"
                     /note="Di- and tricarboxylate antiporter [Carbohydrate
                     transport and metabolism]; COG0471"
                     /db_xref="CDD:440239"
     CDS             1..606
                     /gene="SLC13A1"
                     /coded_by="XM_054059087.1:1696..3516"
                     /db_xref="GeneID:104061619"
ORIGIN      
        1 mkilsyllay rrfllivltp llllplplii ktkeaecayt lfvvaifwlt ealplavsal
       61 lpafmfplfg imeskqvasa yfkdfhllli gviclatsie kwnfhkrval rmvmlvgvnp
      121 awlmlgfmvs caflsmwlsn tsaaamvmpi veavaqqiir aeteadalem scsngsvnpa
      181 leldesigec etsdwkekek qvngcdnsvg stvctienen ekekeqqnlp paetggkskk
      241 dkysgvfkvm clcvaysati gglttitgts tnlifaehfn trysscqcin fgswfilsip
      301 itviilvlsw vwlqwlflgf dfknmfkcgk kktpreeasa qviqeeykkl grmsypeivt
      361 lilfilmtll wftrepgfip gwsslfpkyk gyatdsttal vigilffiip aktlsktsng
      421 entvfgytpl itwkefqscm pweiailvgg gfaladgcev sklsewvask ltplgslplw
      481 liiliscliv tsvtevasnp atitiflpil splaeaihvn plfilipatl ctsfafllpv
      541 anpanaivfs yghltimdmv kaglginiig vavvmlaimt wivpifdlyt ypswapvisa
      601 anstgl
//
LOCUS       XP_009561870             605 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier family 13 member 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_009561870
VERSION     XP_009561870.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563575.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561870.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..605
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..605
                     /product="solute carrier family 13 member 1 isoform X2"
                     /calculated_mol_wt=66593
     Region          <3..168
                     /region_name="CitMHS"
                     /note="Citrate transporter; pfam03600"
                     /db_xref="CDD:460985"
     Region          90..580
                     /region_name="CitT"
                     /note="Di- and tricarboxylate antiporter [Carbohydrate
                     transport and metabolism]; COG0471"
                     /db_xref="CDD:440239"
     CDS             1..605
                     /gene="SLC13A1"
                     /coded_by="XM_009563575.2:1696..3513"
                     /db_xref="GeneID:104061619"
ORIGIN      
        1 mkilsyllay rrfllivltp llllplplii ktkeaecayt lfvvaifwlt ealplavsal
       61 lpafmfplfg imeskqvasa yfkdfhllli gviclatsie kwnfhkrval rmvmlvgvnp
      121 awlmlgfmvs caflsmwlsn tsaaamvmpi veavaqqiir aeteadalem scsngsvnpa
      181 leldesigec etsdwkekek qvngcdnsvg stvctienen ekekeqnlpp aetggkskkd
      241 kysgvfkvmc lcvaysatig glttitgtst nlifaehfnt rysscqcinf gswfilsipi
      301 tviilvlswv wlqwlflgfd fknmfkcgkk ktpreeasaq viqeeykklg rmsypeivtl
      361 ilfilmtllw ftrepgfipg wsslfpkykg yatdsttalv igilffiipa ktlsktsnge
      421 ntvfgytpli twkefqscmp weiailvggg faladgcevs klsewvaskl tplgslplwl
      481 iilisclivt svtevasnpa titiflpils plaeaihvnp lfilipatlc tsfafllpva
      541 npanaivfsy ghltimdmvk aglginiigv avvmlaimtw ivpifdlyty pswapvisaa
      601 nstgl
//
LOCUS       XP_009561869             464 aa            linear   VRT 09-MAR-2023
DEFINITION  V-type proton ATPase subunit S1 [Cuculus canorus].
ACCESSION   XP_009561869
VERSION     XP_009561869.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563574.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561869.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..464
                     /product="V-type proton ATPase subunit S1"
                     /calculated_mol_wt=51479
     Region          254..399
                     /region_name="VAS1_LD"
                     /note="V-type proton ATPase subunit S1, luminal domain;
                     pfam05827"
                     /db_xref="CDD:461752"
     Region          414..452
                     /region_name="Ac45-VOA1_TM"
                     /note="V0 complex accessory subunit Ac45/VOA1
                     transmembrane domain; pfam20520"
                     /db_xref="CDD:466669"
     CDS             1..464
                     /gene="LOC104061618"
                     /coded_by="XM_009563574.2:255..1649"
                     /db_xref="GeneID:104061618"
ORIGIN      
        1 mhlpavmtql csaapapllc tlavlfklal svdhvpmllw stqrsqwnqd talheghvvs
       61 aqeltgllqp vfgpnsrnli lflqdtlsid dftyysesyg dknpfqnvqk nlqsspsslv
      121 lpavdceatr yllsflqelg vgkltnvtnl dvsqleants kpnflivqlh plasslneis
      181 tleaiaendk iigrltmdlq ergihfsviy tavrpsrisr rtdvlgelrr qlmateeeds
      241 lsypplnvtt gnltcilfya snfslkanns ilidltnatf vtqnvdasss ecsdinttls
      301 lkytkpvngi ssleirflmt nkfyegsarn wstldsveiv qdeekfakfs vsvisapaey
      361 sfhcqlvgts nlyparlips ndeaknwdvf isklqiqgfn iennqfsyas dctgfftpgi
      421 wmglvtsiil lwiltygihm imqlttnsrf ddpkgpalsv pqte
//
LOCUS       XP_053915086             445 aa            linear   VRT 09-MAR-2023
DEFINITION  POU domain, class 3, transcription factor 3 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053915086
VERSION     XP_053915086.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059111.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..445
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..445
                     /product="POU domain, class 3, transcription factor 3
                     isoform X1"
                     /calculated_mol_wt=46073
     Region          259..333
                     /region_name="POU"
                     /note="Found in Pit-Oct-Unc transcription factors;
                     smart00352"
                     /db_xref="CDD:197673"
     Region          352..408
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     CDS             1..445
                     /gene="POU3F3"
                     /coded_by="XM_054059111.1:1149..2486"
                     /db_xref="GeneID:104056687"
ORIGIN      
        1 maaatsnpyl pgngilaags ivhadsgggg gggggggggg mqpgsvavts vaggyrgdpa
       61 akmvqsdfmp gamaasnggh mlshahqwvt alphaaaaaa aaaaaaaeag spwsgspvgm
      121 tgspqqpppp ppdvkggggr ddlhsgaalh hrpphlgpph qghpaawgaa aaaahlpsma
      181 ggqqqqqsll ysqpggftvn gmlspppggq slvhpglvrg etpelgehpg hhhhhhhqhp
      241 ghhpphhggv nshdphsded tptsddleqf akqfkqrrik lgftqadvgl algtlygnvf
      301 sqtticrfea lqlsfknmck lkpllnkwle eadsstgspt sidkiaaqgr krkkrtsiev
      361 svkgaleshf lkcpkpsaqe itnladslql ekevvrvwfc nrrqkekrmt ppgiqqqtpd
      421 dvysqvgtvn sdtppphhgl qtsvq
//
LOCUS       XP_053915093             379 aa            linear   VRT 09-MAR-2023
DEFINITION  POU domain, class 3, transcription factor 3 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053915093
VERSION     XP_053915093.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059118.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..379
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..379
                     /product="POU domain, class 3, transcription factor 3
                     isoform X2"
                     /calculated_mol_wt=38825
     Region          259..333
                     /region_name="POU"
                     /note="Found in Pit-Oct-Unc transcription factors;
                     smart00352"
                     /db_xref="CDD:197673"
     CDS             1..379
                     /gene="POU3F3"
                     /coded_by="XM_054059118.1:1155..2294"
                     /db_xref="GeneID:104056687"
ORIGIN      
        1 maaatsnpyl pgngilaags ivhadsgggg gggggggggg mqpgsvavts vaggyrgdpa
       61 akmvqsdfmp gamaasnggh mlshahqwvt alphaaaaaa aaaaaaaeag spwsgspvgm
      121 tgspqqpppp ppdvkggggr ddlhsgaalh hrpphlgpph qghpaawgaa aaaahlpsma
      181 ggqqqqqsll ysqpggftvn gmlspppggq slvhpglvrg etpelgehpg hhhhhhhqhp
      241 ghhpphhggv nshdphsded tptsddleqf akqfkqrrik lgftqadvgl algtlygnvf
      301 sqtticrfea lqlsfknmck lkpllnkwle eadsstgspt sidkiaaqgr krkkrtsiei
      361 kgfrrtehlq lhlsellls
//
LOCUS       XP_053915290             687 aa            linear   VRT 09-MAR-2023
DEFINITION  ligand of Numb protein X 2 [Cuculus canorus].
ACCESSION   XP_053915290
VERSION     XP_053915290.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059315.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..687
                     /product="ligand of Numb protein X 2"
                     /calculated_mol_wt=75603
     Region          43..87
                     /region_name="mRING-HC-C3HC3D_LNX2"
                     /note="Modified RING finger, HC subclass (C3HC3D-type),
                     found in ligand of numb protein X 2 (LNX2); cd16780"
                     /db_xref="CDD:319694"
     Site            order(43,45..46,55,63..66)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:319694"
     Region          224..312
                     /region_name="PDZ1_LNX1_2-like"
                     /note="PDZ domain 1 of human Ligand of Numb protein X 1
                     (LNX1) and LNX2, and related domains; cd06677"
                     /db_xref="CDD:467165"
     Site            order(239..245,258,261,291,295,298..299)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467165"
     Region          334..416
                     /region_name="PDZ2_LNX1_2-like"
                     /note="PDZ domain 2 of human Ligand of Numb protein X 1
                     (LNX1) and LNX2, and related domains; cd06678"
                     /db_xref="CDD:467166"
     Site            order(346..352,363,366,396,400,403..404)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467166"
     Region          464..551
                     /region_name="PDZ3_LNX1_2-like"
                     /note="PDZ domain 3 of human Ligand of Numb protein X 1
                     (LNX1) and LNX2, and related domains; cd06679"
                     /db_xref="CDD:467167"
     Site            order(475..481,496,499,529,533,536..537)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467167"
     Region          596..684
                     /region_name="PDZ4_LNX1_2-like"
                     /note="PDZ domain 4 of human Ligand of Numb protein X 1
                     (LNX1) and LNX2, and related domains; cd06680"
                     /db_xref="CDD:467168"
     Site            order(607..613,628,631,661,665,668..669)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467168"
     CDS             1..687
                     /gene="LNX2"
                     /coded_by="XM_054059315.1:322..2385"
                     /db_xref="GeneID:104064163"
ORIGIN      
        1 mgtagdnmas veqnaslnpl cfecgqqhwt renhlynyqn evdddlvchi clqpllqpld
       61 tpcghtfcyk clrnflqekd fcpldrkrlh fklckkssil vhklldklfv lcpfssvcqe
      121 vmqrcdlaah lknrcpgasn rrvalerrkt sklqaeaege sgpggteqps slspdadqgi
      181 vpaeqsftsp alptwtdeps idnpsfeent vadtnqqppt lpegeittie ihrsnpyiel
      241 gisivggnet pliniviqev yrdgiiardg rllagdqilq vnsfdisnvs hnharavlsq
      301 pcsvlhltvl rerrfgsrth nhvdatsssr edsfqvtlhk rdsseqlgik lvrrtdepgv
      361 fildlleggl aaqdgrlcsn drvlainghd lkhgtpelaa qviqasgerv nliisrplks
      421 qtvsiirdtg thnsnthqhq sqqlfhsrpn shkdlsqcvt cqekhitvkk epheslgmtv
      481 aggrgsksge lpifvtsvqp hgclardgri krgdvllnin gidltnlshs eavamlkasa
      541 assvvalkal evqiveeqpq aneeqlstis eneydaswsp swvmwlglps clhschdvvl
      601 rrsnlgswgf sivggyeenh tnqpffikti vlgtpayfdg rlkcgdmiia vnglstvgms
      661 hsalvpmlke qrskvtltvi cwpgsli
//
LOCUS       XP_053915293             687 aa            linear   VRT 09-MAR-2023
DEFINITION  ligand of Numb protein X 2 [Cuculus canorus].
ACCESSION   XP_053915293
VERSION     XP_053915293.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059318.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..687
                     /product="ligand of Numb protein X 2"
                     /calculated_mol_wt=75603
     Region          43..87
                     /region_name="mRING-HC-C3HC3D_LNX2"
                     /note="Modified RING finger, HC subclass (C3HC3D-type),
                     found in ligand of numb protein X 2 (LNX2); cd16780"
                     /db_xref="CDD:319694"
     Site            order(43,45..46,55,63..66)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:319694"
     Region          224..312
                     /region_name="PDZ1_LNX1_2-like"
                     /note="PDZ domain 1 of human Ligand of Numb protein X 1
                     (LNX1) and LNX2, and related domains; cd06677"
                     /db_xref="CDD:467165"
     Site            order(239..245,258,261,291,295,298..299)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467165"
     Region          334..416
                     /region_name="PDZ2_LNX1_2-like"
                     /note="PDZ domain 2 of human Ligand of Numb protein X 1
                     (LNX1) and LNX2, and related domains; cd06678"
                     /db_xref="CDD:467166"
     Site            order(346..352,363,366,396,400,403..404)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467166"
     Region          464..551
                     /region_name="PDZ3_LNX1_2-like"
                     /note="PDZ domain 3 of human Ligand of Numb protein X 1
                     (LNX1) and LNX2, and related domains; cd06679"
                     /db_xref="CDD:467167"
     Site            order(475..481,496,499,529,533,536..537)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467167"
     Region          596..684
                     /region_name="PDZ4_LNX1_2-like"
                     /note="PDZ domain 4 of human Ligand of Numb protein X 1
                     (LNX1) and LNX2, and related domains; cd06680"
                     /db_xref="CDD:467168"
     Site            order(607..613,628,631,661,665,668..669)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467168"
     CDS             1..687
                     /gene="LNX2"
                     /coded_by="XM_054059318.1:253..2316"
                     /db_xref="GeneID:104064163"
ORIGIN      
        1 mgtagdnmas veqnaslnpl cfecgqqhwt renhlynyqn evdddlvchi clqpllqpld
       61 tpcghtfcyk clrnflqekd fcpldrkrlh fklckkssil vhklldklfv lcpfssvcqe
      121 vmqrcdlaah lknrcpgasn rrvalerrkt sklqaeaege sgpggteqps slspdadqgi
      181 vpaeqsftsp alptwtdeps idnpsfeent vadtnqqppt lpegeittie ihrsnpyiel
      241 gisivggnet pliniviqev yrdgiiardg rllagdqilq vnsfdisnvs hnharavlsq
      301 pcsvlhltvl rerrfgsrth nhvdatsssr edsfqvtlhk rdsseqlgik lvrrtdepgv
      361 fildlleggl aaqdgrlcsn drvlainghd lkhgtpelaa qviqasgerv nliisrplks
      421 qtvsiirdtg thnsnthqhq sqqlfhsrpn shkdlsqcvt cqekhitvkk epheslgmtv
      481 aggrgsksge lpifvtsvqp hgclardgri krgdvllnin gidltnlshs eavamlkasa
      541 assvvalkal evqiveeqpq aneeqlstis eneydaswsp swvmwlglps clhschdvvl
      601 rrsnlgswgf sivggyeenh tnqpffikti vlgtpayfdg rlkcgdmiia vnglstvgms
      661 hsalvpmlke qrskvtltvi cwpgsli
//
LOCUS       XP_053915300             687 aa            linear   VRT 09-MAR-2023
DEFINITION  ligand of Numb protein X 2 [Cuculus canorus].
ACCESSION   XP_053915300
VERSION     XP_053915300.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059325.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..687
                     /product="ligand of Numb protein X 2"
                     /calculated_mol_wt=75603
     Region          43..87
                     /region_name="mRING-HC-C3HC3D_LNX2"
                     /note="Modified RING finger, HC subclass (C3HC3D-type),
                     found in ligand of numb protein X 2 (LNX2); cd16780"
                     /db_xref="CDD:319694"
     Site            order(43,45..46,55,63..66)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:319694"
     Region          224..312
                     /region_name="PDZ1_LNX1_2-like"
                     /note="PDZ domain 1 of human Ligand of Numb protein X 1
                     (LNX1) and LNX2, and related domains; cd06677"
                     /db_xref="CDD:467165"
     Site            order(239..245,258,261,291,295,298..299)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467165"
     Region          334..416
                     /region_name="PDZ2_LNX1_2-like"
                     /note="PDZ domain 2 of human Ligand of Numb protein X 1
                     (LNX1) and LNX2, and related domains; cd06678"
                     /db_xref="CDD:467166"
     Site            order(346..352,363,366,396,400,403..404)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467166"
     Region          464..551
                     /region_name="PDZ3_LNX1_2-like"
                     /note="PDZ domain 3 of human Ligand of Numb protein X 1
                     (LNX1) and LNX2, and related domains; cd06679"
                     /db_xref="CDD:467167"
     Site            order(475..481,496,499,529,533,536..537)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467167"
     Region          596..684
                     /region_name="PDZ4_LNX1_2-like"
                     /note="PDZ domain 4 of human Ligand of Numb protein X 1
                     (LNX1) and LNX2, and related domains; cd06680"
                     /db_xref="CDD:467168"
     Site            order(607..613,628,631,661,665,668..669)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467168"
     CDS             1..687
                     /gene="LNX2"
                     /coded_by="XM_054059325.1:253..2316"
                     /db_xref="GeneID:104064163"
ORIGIN      
        1 mgtagdnmas veqnaslnpl cfecgqqhwt renhlynyqn evdddlvchi clqpllqpld
       61 tpcghtfcyk clrnflqekd fcpldrkrlh fklckkssil vhklldklfv lcpfssvcqe
      121 vmqrcdlaah lknrcpgasn rrvalerrkt sklqaeaege sgpggteqps slspdadqgi
      181 vpaeqsftsp alptwtdeps idnpsfeent vadtnqqppt lpegeittie ihrsnpyiel
      241 gisivggnet pliniviqev yrdgiiardg rllagdqilq vnsfdisnvs hnharavlsq
      301 pcsvlhltvl rerrfgsrth nhvdatsssr edsfqvtlhk rdsseqlgik lvrrtdepgv
      361 fildlleggl aaqdgrlcsn drvlainghd lkhgtpelaa qviqasgerv nliisrplks
      421 qtvsiirdtg thnsnthqhq sqqlfhsrpn shkdlsqcvt cqekhitvkk epheslgmtv
      481 aggrgsksge lpifvtsvqp hgclardgri krgdvllnin gidltnlshs eavamlkasa
      541 assvvalkal evqiveeqpq aneeqlstis eneydaswsp swvmwlglps clhschdvvl
      601 rrsnlgswgf sivggyeenh tnqpffikti vlgtpayfdg rlkcgdmiia vnglstvgms
      661 hsalvpmlke qrskvtltvi cwpgsli
//
LOCUS       XP_053915309             128 aa            linear   VRT 09-MAR-2023
DEFINITION  protein POLR1D [Cuculus canorus].
ACCESSION   XP_053915309
VERSION     XP_053915309.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059334.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..128
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..128
                     /product="protein POLR1D"
                     /calculated_mol_wt=15018
     CDS             1..128
                     /gene="LOC104064164"
                     /coded_by="XM_054059334.1:82..468"
                     /db_xref="GeneID:104064164"
ORIGIN      
        1 meedpelerk aveellkeak rgrtraetmg amgwlkcpla gtnkrflint ikntlpsqke
       61 qdqerdqked gkeaepnnsr keekpkkrri hpytpsfqsr rrvsyspprh rnrnqptkdk
      121 hqklsskr
//
LOCUS       XP_009563431             276 aa            linear   VRT 09-MAR-2023
DEFINITION  arginine and glutamate-rich protein 1 [Cuculus canorus].
ACCESSION   XP_009563431
VERSION     XP_009563431.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565136.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009563431.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..276
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..276
                     /product="arginine and glutamate-rich protein 1"
                     /calculated_mol_wt=33342
     Region          133..272
                     /region_name="ARGLU"
                     /note="Arginine and glutamate-rich 1; pfam15346"
                     /db_xref="CDD:405931"
     CDS             1..276
                     /gene="ARGLU1"
                     /coded_by="XM_009565136.2:231..1061"
                     /db_xref="GeneID:104062992"
ORIGIN      
        1 mgrsrsrsss rskhtksskh nkknrsrsrs rsrekdrark rsksrdskrn rrresrsrsr
       61 sntapssrrd rdrdrdrass ppdridifgr tvskrsslde kqkreeeekk aeferqrkir
      121 qqeieeklie eetarrveel vakrveeele krkdeierev lrrveeakri mekqlleele
      181 rqrqaelaaq kareeeerak reelerilee nnrkiaeaqa klaeeqlkiv eeqrkiheer
      241 mkleqerqrq qkeeqkiilg kgksrpklsf slksqd
//
LOCUS       XP_053915328            1032 aa            linear   VRT 09-MAR-2023
DEFINITION  connector enhancer of kinase suppressor of ras 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053915328
VERSION     XP_053915328.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059353.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1032
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1032
                     /product="connector enhancer of kinase suppressor of ras 2
                     isoform X1"
                     /calculated_mol_wt=117076
     Region          8..76
                     /region_name="SAM_CNK1,2,3-suppressor"
                     /note="SAM domain of CNK1,2,3-suppressor subfamily;
                     cd09511"
                     /db_xref="CDD:188910"
     Site            order(24,49,53,58..65,67..68,71)
                     /site_type="other"
                     /note="heterodimer interface EH [polypeptide binding]"
                     /db_xref="CDD:188910"
     Region          84..176
                     /region_name="CRIC_ras_sig"
                     /note="Connector enhancer of kinase suppressor of ras;
                     pfam10534"
                     /db_xref="CDD:463138"
     Region          214..294
                     /region_name="PDZ_CNK1_2_3-like"
                     /note="PDZ domain of connector enhancer of kinase
                     suppressor of ras 1 (CNK1), CNK2, CNK3, and related
                     domains; cd06748"
                     /db_xref="CDD:467230"
     Site            order(226..232,242,245,275,279,282..283)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467230"
     Region          339..>487
                     /region_name="CNK2_3_dom"
                     /note="Connector enhancer of kinase suppressor of ras 2/3
                     domain; pfam06663"
                     /db_xref="CDD:461979"
     Region          559..672
                     /region_name="PH_CNK_mammalian-like"
                     /note="Connector enhancer of KSR (Kinase suppressor of
                     ras) (CNK) pleckstrin homology (PH) domain; cd01260"
                     /db_xref="CDD:269962"
     CDS             1..1032
                     /gene="CNKSR2"
                     /coded_by="XM_054059353.1:329..3427"
                     /db_xref="GeneID:104063406"
ORIGIN      
        1 malimepvsk wspsqvvdwm kglddclqqy iknferekis gdqllrithq eledlgvtri
       61 ghqelileav dllcalnygl etenlktlsh klnasaknlq nfitgrrrsg hydgrtsrkl
      121 pndfltsvvd ligaakslla wldrspfaav tdysvtrnnv iqlcleltti vqqdctvyet
      181 enkilhvckt lsgvcdhiis lssdplvsqs ahleviqltn ikpseglgmy ikstydglhv
      241 itgttenspa drckkihagd eviqvnhqtv vgwqlknlvn alredpsgvi ltlkkrpqsm
      301 ltsapallkn mrwkplalqp liprsptssv atpsstistp tkrdssalqd lyipppptep
      361 yvprdekgnl pcddvgrhiv gkpvhtgses pnsfldqeyr krfnvveeda vlycyeyekg
      421 rtsgpgrres tptygklrpi smpveynwvg dyedpnkikr dsrrensllr ymsnekigqe
      481 dymfqrnskk dtgkkskkkg dkcsspshys llpslqmdsl rqevmgtpgp etalyhtfqq
      541 sslqqkskkk nkapipgksk rrisckdlgr gdcegwlwkk kdaksyfsqk wkkywfvlkd
      601 tslywyinee dekaegfisl pefkidrase crkkyafkac hpkiksfyfa aehlddmnrw
      661 lnrinmlaag yaererikqe qdywsesdke eadtpstpkq dsppppydty prppsmscts
      721 pyvepkhsrl sstetsqsqs sheefrpeva gsatdspvrk tasqrrswqd lietpltssg
      781 lhylqtlple dsvfseaavv spehrrqstl ptqkchlqdh ygpfplvege rmqvlngngg
      841 kprsftlprd sgfnhccqsl svgasdhhee aqqkeveeee eeeegkaaee nqedkietie
      901 ektadslqdl yraleqasls plgehristk leykksfikr csdplvnekl hqlrilkstl
      961 karegevaii nkvldnpalt srdfqewkqm yldlfmdiyq sstprdsvng ssevdalias
     1021 lahthsyiet hv
//
LOCUS       XP_053915336             983 aa            linear   VRT 09-MAR-2023
DEFINITION  connector enhancer of kinase suppressor of ras 2 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053915336
VERSION     XP_053915336.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059361.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..983
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..983
                     /product="connector enhancer of kinase suppressor of ras 2
                     isoform X2"
                     /calculated_mol_wt=111569
     Region          8..76
                     /region_name="SAM_CNK1,2,3-suppressor"
                     /note="SAM domain of CNK1,2,3-suppressor subfamily;
                     cd09511"
                     /db_xref="CDD:188910"
     Site            order(24,49,53,58..65,67..68,71)
                     /site_type="other"
                     /note="heterodimer interface EH [polypeptide binding]"
                     /db_xref="CDD:188910"
     Region          84..176
                     /region_name="CRIC_ras_sig"
                     /note="Connector enhancer of kinase suppressor of ras;
                     pfam10534"
                     /db_xref="CDD:463138"
     Region          214..294
                     /region_name="PDZ_CNK1_2_3-like"
                     /note="PDZ domain of connector enhancer of kinase
                     suppressor of ras 1 (CNK1), CNK2, CNK3, and related
                     domains; cd06748"
                     /db_xref="CDD:467230"
     Site            order(226..232,242,245,275,279,282..283)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467230"
     Region          290..>438
                     /region_name="CNK2_3_dom"
                     /note="Connector enhancer of kinase suppressor of ras 2/3
                     domain; pfam06663"
                     /db_xref="CDD:461979"
     Region          510..623
                     /region_name="PH_CNK_mammalian-like"
                     /note="Connector enhancer of KSR (Kinase suppressor of
                     ras) (CNK) pleckstrin homology (PH) domain; cd01260"
                     /db_xref="CDD:269962"
     CDS             1..983
                     /gene="CNKSR2"
                     /coded_by="XM_054059361.1:329..3280"
                     /db_xref="GeneID:104063406"
ORIGIN      
        1 malimepvsk wspsqvvdwm kglddclqqy iknferekis gdqllrithq eledlgvtri
       61 ghqelileav dllcalnygl etenlktlsh klnasaknlq nfitgrrrsg hydgrtsrkl
      121 pndfltsvvd ligaakslla wldrspfaav tdysvtrnnv iqlcleltti vqqdctvyet
      181 enkilhvckt lsgvcdhiis lssdplvsqs ahleviqltn ikpseglgmy ikstydglhv
      241 itgttenspa drckkihagd eviqvnhqtv pliprsptss vatpsstist ptkrdssalq
      301 dlyippppte pyvprdekgn lpcddvgrhi vgkpvhtgse spnsfldqey rkrfnvveed
      361 avlycyeyek grtsgpgrre stptygklrp ismpveynwv gdyedpnkik rdsrrensll
      421 rymsnekigq edymfqrnsk kdtgkkskkk gdkcsspshy sllpslqmds lrqevmgtpg
      481 petalyhtfq qsslqqkskk knkapipgks krrisckdlg rgdcegwlwk kkdaksyfsq
      541 kwkkywfvlk dtslywyine edekaegfis lpefkidras ecrkkyafka chpkiksfyf
      601 aaehlddmnr wlnrinmlaa gyaererikq eqdywsesdk eeadtpstpk qdsppppydt
      661 yprppsmsct spyvepkhsr lsstetsqsq ssheefrpev agsatdspvr ktasqrrswq
      721 dlietpltss glhylqtlpl edsvfseaav vspehrrqst lptqkchlqd hygpfplveg
      781 ermqvlngng gkprsftlpr dsgfnhccqs lsvgasdhhe eaqqkeveee eeeeegkaae
      841 enqedkieti eektadslqd lyraleqasl splgehrist kleykksfik rcsdplvnek
      901 lhqlrilkst lkaregevai inkvldnpal tsrdfqewkq myldlfmdiy qsstprdsvn
      961 gssevdalia slahthsyie thv
//
LOCUS       XP_053915341             940 aa            linear   VRT 09-MAR-2023
DEFINITION  connector enhancer of kinase suppressor of ras 2 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053915341
VERSION     XP_053915341.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059366.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..940
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..940
                     /product="connector enhancer of kinase suppressor of ras 2
                     isoform X3"
                     /calculated_mol_wt=106858
     Region          8..76
                     /region_name="SAM_CNK1,2,3-suppressor"
                     /note="SAM domain of CNK1,2,3-suppressor subfamily;
                     cd09511"
                     /db_xref="CDD:188910"
     Site            order(24,49,53,58..65,67..68,71)
                     /site_type="other"
                     /note="heterodimer interface EH [polypeptide binding]"
                     /db_xref="CDD:188910"
     Region          84..176
                     /region_name="CRIC_ras_sig"
                     /note="Connector enhancer of kinase suppressor of ras;
                     pfam10534"
                     /db_xref="CDD:463138"
     Region          247..>395
                     /region_name="CNK2_3_dom"
                     /note="Connector enhancer of kinase suppressor of ras 2/3
                     domain; pfam06663"
                     /db_xref="CDD:461979"
     Region          467..580
                     /region_name="PH_CNK_mammalian-like"
                     /note="Connector enhancer of KSR (Kinase suppressor of
                     ras) (CNK) pleckstrin homology (PH) domain; cd01260"
                     /db_xref="CDD:269962"
     CDS             1..940
                     /gene="CNKSR2"
                     /coded_by="XM_054059366.1:329..3151"
                     /db_xref="GeneID:104063406"
ORIGIN      
        1 malimepvsk wspsqvvdwm kglddclqqy iknferekis gdqllrithq eledlgvtri
       61 ghqelileav dllcalnygl etenlktlsh klnasaknlq nfitgrrrsg hydgrtsrkl
      121 pndfltsvvd ligaakslla wldrspfaav tdysvtrnnv iqlcleltti vqqdctvyet
      181 enkilhvckt lsgvcdhiis lssdplvsqs ahleviqltn ikpseglpli prsptssvat
      241 psstistptk rdssalqdly ipppptepyv prdekgnlpc ddvgrhivgk pvhtgsespn
      301 sfldqeyrkr fnvveedavl ycyeyekgrt sgpgrrestp tygklrpism pveynwvgdy
      361 edpnkikrds rrensllrym snekigqedy mfqrnskkdt gkkskkkgdk csspshysll
      421 pslqmdslrq evmgtpgpet alyhtfqqss lqqkskkknk apipgkskrr isckdlgrgd
      481 cegwlwkkkd aksyfsqkwk kywfvlkdts lywyineede kaegfislpe fkidrasecr
      541 kkyafkachp kiksfyfaae hlddmnrwln rinmlaagya ererikqeqd ywsesdkeea
      601 dtpstpkqds ppppydtypr ppsmsctspy vepkhsrlss tetsqsqssh eefrpevags
      661 atdspvrkta sqrrswqdli etpltssglh ylqtlpleds vfseaavvsp ehrrqstlpt
      721 qkchlqdhyg pfplvegerm qvlngnggkp rsftlprdsg fnhccqslsv gasdhheeaq
      781 qkeveeeeee eegkaaeenq edkietieek tadslqdlyr aleqaslspl gehristkle
      841 ykksfikrcs dplvneklhq lrilkstlka regevaiink vldnpaltsr dfqewkqmyl
      901 dlfmdiyqss tprdsvngss evdaliasla hthsyiethv
//
LOCUS       XP_053915345             909 aa            linear   VRT 09-MAR-2023
DEFINITION  connector enhancer of kinase suppressor of ras 2 isoform X4
            [Cuculus canorus].
ACCESSION   XP_053915345
VERSION     XP_053915345.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059370.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..909
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..909
                     /product="connector enhancer of kinase suppressor of ras 2
                     isoform X4"
                     /calculated_mol_wt=102978
     Region          8..76
                     /region_name="SAM_CNK1,2,3-suppressor"
                     /note="SAM domain of CNK1,2,3-suppressor subfamily;
                     cd09511"
                     /db_xref="CDD:188910"
     Site            order(24,49,53,58..65,67..68,71)
                     /site_type="other"
                     /note="heterodimer interface EH [polypeptide binding]"
                     /db_xref="CDD:188910"
     Region          84..176
                     /region_name="CRIC_ras_sig"
                     /note="Connector enhancer of kinase suppressor of ras;
                     pfam10534"
                     /db_xref="CDD:463138"
     Region          214..294
                     /region_name="PDZ_CNK1_2_3-like"
                     /note="PDZ domain of connector enhancer of kinase
                     suppressor of ras 1 (CNK1), CNK2, CNK3, and related
                     domains; cd06748"
                     /db_xref="CDD:467230"
     Site            order(226..232,242,245,275,279,282..283)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467230"
     Region          339..>487
                     /region_name="CNK2_3_dom"
                     /note="Connector enhancer of kinase suppressor of ras 2/3
                     domain; pfam06663"
                     /db_xref="CDD:461979"
     Region          559..672
                     /region_name="PH_CNK_mammalian-like"
                     /note="Connector enhancer of KSR (Kinase suppressor of
                     ras) (CNK) pleckstrin homology (PH) domain; cd01260"
                     /db_xref="CDD:269962"
     CDS             1..909
                     /gene="CNKSR2"
                     /coded_by="XM_054059370.1:329..3058"
                     /db_xref="GeneID:104063406"
ORIGIN      
        1 malimepvsk wspsqvvdwm kglddclqqy iknferekis gdqllrithq eledlgvtri
       61 ghqelileav dllcalnygl etenlktlsh klnasaknlq nfitgrrrsg hydgrtsrkl
      121 pndfltsvvd ligaakslla wldrspfaav tdysvtrnnv iqlcleltti vqqdctvyet
      181 enkilhvckt lsgvcdhiis lssdplvsqs ahleviqltn ikpseglgmy ikstydglhv
      241 itgttenspa drckkihagd eviqvnhqtv vgwqlknlvn alredpsgvi ltlkkrpqsm
      301 ltsapallkn mrwkplalqp liprsptssv atpsstistp tkrdssalqd lyipppptep
      361 yvprdekgnl pcddvgrhiv gkpvhtgses pnsfldqeyr krfnvveeda vlycyeyekg
      421 rtsgpgrres tptygklrpi smpveynwvg dyedpnkikr dsrrensllr ymsnekigqe
      481 dymfqrnskk dtgkkskkkg dkcsspshys llpslqmdsl rqevmgtpgp etalyhtfqq
      541 sslqqkskkk nkapipgksk rrisckdlgr gdcegwlwkk kdaksyfsqk wkkywfvlkd
      601 tslywyinee dekaegfisl pefkidrase crkkyafkac hpkiksfyfa aehlddmnrw
      661 lnrinmlaag yaererikqe qdywsesdke eadtpstpkq dsppppydty prppsmscts
      721 pyvepkhsrl sstetsqsqs sheefrpeva gsatdspvrk tasqrrswqd lietpltssg
      781 lhylqtlple dsvfseaavv spehrrqstl ptqkchlqdh ygpfplvege rmqvlngngg
      841 kprsftlprd sgfnhccqsl svgasdhhee aqqkeveeee eeeegkaaee nqedksqgrr
      901 sshykqssg
//
LOCUS       XP_053915349             896 aa            linear   VRT 09-MAR-2023
DEFINITION  connector enhancer of kinase suppressor of ras 2 isoform X5
            [Cuculus canorus].
ACCESSION   XP_053915349
VERSION     XP_053915349.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059374.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..896
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..896
                     /product="connector enhancer of kinase suppressor of ras 2
                     isoform X5"
                     /calculated_mol_wt=101519
     Region          8..76
                     /region_name="SAM_CNK1,2,3-suppressor"
                     /note="SAM domain of CNK1,2,3-suppressor subfamily;
                     cd09511"
                     /db_xref="CDD:188910"
     Site            order(24,49,53,58..65,67..68,71)
                     /site_type="other"
                     /note="heterodimer interface EH [polypeptide binding]"
                     /db_xref="CDD:188910"
     Region          84..176
                     /region_name="CRIC_ras_sig"
                     /note="Connector enhancer of kinase suppressor of ras;
                     pfam10534"
                     /db_xref="CDD:463138"
     Region          214..294
                     /region_name="PDZ_CNK1_2_3-like"
                     /note="PDZ domain of connector enhancer of kinase
                     suppressor of ras 1 (CNK1), CNK2, CNK3, and related
                     domains; cd06748"
                     /db_xref="CDD:467230"
     Site            order(226..232,242,245,275,279,282..283)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467230"
     Region          339..>487
                     /region_name="CNK2_3_dom"
                     /note="Connector enhancer of kinase suppressor of ras 2/3
                     domain; pfam06663"
                     /db_xref="CDD:461979"
     Region          559..672
                     /region_name="PH_CNK_mammalian-like"
                     /note="Connector enhancer of KSR (Kinase suppressor of
                     ras) (CNK) pleckstrin homology (PH) domain; cd01260"
                     /db_xref="CDD:269962"
     CDS             1..896
                     /gene="CNKSR2"
                     /coded_by="XM_054059374.1:329..3019"
                     /db_xref="GeneID:104063406"
ORIGIN      
        1 malimepvsk wspsqvvdwm kglddclqqy iknferekis gdqllrithq eledlgvtri
       61 ghqelileav dllcalnygl etenlktlsh klnasaknlq nfitgrrrsg hydgrtsrkl
      121 pndfltsvvd ligaakslla wldrspfaav tdysvtrnnv iqlcleltti vqqdctvyet
      181 enkilhvckt lsgvcdhiis lssdplvsqs ahleviqltn ikpseglgmy ikstydglhv
      241 itgttenspa drckkihagd eviqvnhqtv vgwqlknlvn alredpsgvi ltlkkrpqsm
      301 ltsapallkn mrwkplalqp liprsptssv atpsstistp tkrdssalqd lyipppptep
      361 yvprdekgnl pcddvgrhiv gkpvhtgses pnsfldqeyr krfnvveeda vlycyeyekg
      421 rtsgpgrres tptygklrpi smpveynwvg dyedpnkikr dsrrensllr ymsnekigqe
      481 dymfqrnskk dtgkkskkkg dkcsspshys llpslqmdsl rqevmgtpgp etalyhtfqq
      541 sslqqkskkk nkapipgksk rrisckdlgr gdcegwlwkk kdaksyfsqk wkkywfvlkd
      601 tslywyinee dekaegfisl pefkidrase crkkyafkac hpkiksfyfa aehlddmnrw
      661 lnrinmlaag yaererikqe qdywsesdke eadtpstpkq dsppppydty prppsmscts
      721 pyvepkhsrl sstetsqsqs sheefrpeva gsatdspvrk tasqrrswqd lietpltssg
      781 lhylqtlple dsvfseaavv spehrrqstl ptqkchlqdh ygpfplvege rmqvlngngg
      841 kprsftlprd sgfnhccqsl svgasdhhee aqqkeveeee eeeegkaaee nqedks
//
LOCUS       XP_009563842             595 aa            linear   VRT 09-MAR-2023
DEFINITION  kelch-like protein 34 [Cuculus canorus].
ACCESSION   XP_009563842
VERSION     XP_009563842.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565547.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009563842.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..595
                     /product="kelch-like protein 34"
                     /calculated_mol_wt=67197
     Region          1..136
                     /region_name="BTB_POZ_KLHL34"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in Kelch-like
                     protein 34 (KLHL34); cd18264"
                     /db_xref="CDD:349573"
     Region          126..229
                     /region_name="BACK"
                     /note="BACK (BTB and C-terminal Kelch) domain; cl28903"
                     /db_xref="CDD:475122"
     Region          279..532
                     /region_name="NanM"
                     /note="N-acetylneuraminic acid mutarotase [Cell
                     wall/membrane/envelope biogenesis]; COG3055"
                     /db_xref="CDD:442289"
     Region          316..369
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          373..418
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          421..466
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          470..511
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          515..563
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..595
                     /gene="KLHL34"
                     /coded_by="XM_009565547.2:478..2265"
                     /db_xref="GeneID:104063382"
ORIGIN      
        1 msyflsycka hctdvltqyq tlrsegflcd imlkvkenef pahksllacs sdyframfks
       61 ytqeskasvi hlqvvsptgl qhvldfiyts llplsfesle dtleaasylq vtdaiglcnq
      121 ylvnnlaleh ccfsanvark fylpdalaat ekyivnnlwk lldldlsgll elnfrsllvv
      181 iqspdlpmvk etcllnlvll wlkqdksrla yansllehir yglipveelr ktytqsevpl
      241 saaikcliik ainyhtsvfk qpvlqdkstt lrnqktriil lgggtanggl vtdvvafdvy
      301 nhkwrvlsqm rdrlqnhsvc vvgnflyvlg geietdalgd aksekllsvt nkvhrydprf
      361 ntwtqitgml errcqfsccv lgkdifaigg rgengllhss vevynisrdr wtkakelpck
      421 ihghasaick naiyisggky adpamtskdv yslnslegqw ikkapmsiar fghqmatire
      481 aiftflglye pfseierydp dqnqwtrlrp liydrfcygl avveetalli ggkkwqnsqe
      541 vstqdvvgyd idndgweeic kaplpwcglq cavlqlsela deqdsdilqk rllnc
//
LOCUS       XP_053915372             843 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily A member 6-like [Cuculus
            canorus].
ACCESSION   XP_053915372
VERSION     XP_053915372.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059397.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..843
                     /product="potassium voltage-gated channel subfamily A
                     member 6-like"
                     /calculated_mol_wt=92406
     Region          361..487
                     /region_name="BTB_POZ_KCNA6"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     voltage-gated channel subfamily A member 6 (KCNA6);
                     cd18407"
                     /db_xref="CDD:349714"
     Site            order(361,394,397,399..400,402,404)
                     /site_type="other"
                     /note="putative beta subunit interface [polypeptide
                     binding]"
                     /db_xref="CDD:349714"
     Site            order(362,366,368..375,378,398,401,405,407..408,410..411,
                     414,418,421,425,427,431,435..436,439)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:349714"
     Region          490..774
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..843
                     /gene="LOC104066636"
                     /coded_by="XM_054059397.1:131..2662"
                     /db_xref="GeneID:104066636"
ORIGIN      
        1 magfhsppka pglgllrgkk rgwcvrgllh lfllplacvr aptpsdplsv psrmcvaptp
       61 pplppscacv svllhlllhp slspspfpvc vcrsytvssp pfvcvcvcvl phllplplps
      121 rasvcvaptp spplcvssrv cvlrgsytfs stpfvcigvc sytsflllhr spsppvcaeg
      181 sytsssflcp lpracvcvcs htlfssfsls lllpvpcrvs vrsytffspl frsslpvcvr
      241 vcallhvlll lslpvcvcap tpplslsppp lsppvspcvr gsegkagraa qhrgapaaep
      301 gaepgrnrrw daggqrcrpl karavamrae eplalaapra aggeaeapge ersggsccss
      361 erlvinisgl rfetqlrtls ifpdtllgdp srrvryfdpl rneyffdrnr psfdailyyy
      421 qsggrlrrpv hvpldiflee irfyqlgqea ietfredegf iqeeekplpq hhfqrqvwll
      481 feypessgpa raiaivsvlv ilisivifcl etlpefrqep kgtqtgfges slpgdealll
      541 ppppppsgtp tplhpaagtg pfftdpffli etlciiwfsf ellvrffacp skpefsrnim
      601 niidivaiip yfitlgtela qqqqqkqqpg sssnnggqqq amslailrvi rlvrvfrifk
      661 lsrhskglqi lgktlqasmr elgllifflf igvilfssav yfaetddpds lftsipdafw
      721 wavvsmttvg ygdmypmtig gkivgslcai agvltialpv pvivsnfnyf yhretdheeq
      781 cqythvtcgq qqspfsepkk gdsnqslsks efleaedles mkyanfippn nqgykekkml
      841 tev
//
LOCUS       XP_053915380             843 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily A member 6-like [Cuculus
            canorus].
ACCESSION   XP_053915380
VERSION     XP_053915380.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059405.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..843
                     /product="potassium voltage-gated channel subfamily A
                     member 6-like"
                     /calculated_mol_wt=92406
     Region          361..487
                     /region_name="BTB_POZ_KCNA6"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     voltage-gated channel subfamily A member 6 (KCNA6);
                     cd18407"
                     /db_xref="CDD:349714"
     Site            order(361,394,397,399..400,402,404)
                     /site_type="other"
                     /note="putative beta subunit interface [polypeptide
                     binding]"
                     /db_xref="CDD:349714"
     Site            order(362,366,368..375,378,398,401,405,407..408,410..411,
                     414,418,421,425,427,431,435..436,439)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:349714"
     Region          490..774
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..843
                     /gene="LOC104066636"
                     /coded_by="XM_054059405.1:131..2662"
                     /db_xref="GeneID:104066636"
ORIGIN      
        1 magfhsppka pglgllrgkk rgwcvrgllh lfllplacvr aptpsdplsv psrmcvaptp
       61 pplppscacv svllhlllhp slspspfpvc vcrsytvssp pfvcvcvcvl phllplplps
      121 rasvcvaptp spplcvssrv cvlrgsytfs stpfvcigvc sytsflllhr spsppvcaeg
      181 sytsssflcp lpracvcvcs htlfssfsls lllpvpcrvs vrsytffspl frsslpvcvr
      241 vcallhvlll lslpvcvcap tpplslsppp lsppvspcvr gsegkagraa qhrgapaaep
      301 gaepgrnrrw daggqrcrpl karavamrae eplalaapra aggeaeapge ersggsccss
      361 erlvinisgl rfetqlrtls ifpdtllgdp srrvryfdpl rneyffdrnr psfdailyyy
      421 qsggrlrrpv hvpldiflee irfyqlgqea ietfredegf iqeeekplpq hhfqrqvwll
      481 feypessgpa raiaivsvlv ilisivifcl etlpefrqep kgtqtgfges slpgdealll
      541 ppppppsgtp tplhpaagtg pfftdpffli etlciiwfsf ellvrffacp skpefsrnim
      601 niidivaiip yfitlgtela qqqqqkqqpg sssnnggqqq amslailrvi rlvrvfrifk
      661 lsrhskglqi lgktlqasmr elgllifflf igvilfssav yfaetddpds lftsipdafw
      721 wavvsmttvg ygdmypmtig gkivgslcai agvltialpv pvivsnfnyf yhretdheeq
      781 cqythvtcgq qqspfsepkk gdsnqslsks efleaedles mkyanfippn nqgykekkml
      841 tev
//
LOCUS       XP_053915386             843 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily A member 6-like [Cuculus
            canorus].
ACCESSION   XP_053915386
VERSION     XP_053915386.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059411.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..843
                     /product="potassium voltage-gated channel subfamily A
                     member 6-like"
                     /calculated_mol_wt=92406
     Region          361..487
                     /region_name="BTB_POZ_KCNA6"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     voltage-gated channel subfamily A member 6 (KCNA6);
                     cd18407"
                     /db_xref="CDD:349714"
     Site            order(361,394,397,399..400,402,404)
                     /site_type="other"
                     /note="putative beta subunit interface [polypeptide
                     binding]"
                     /db_xref="CDD:349714"
     Site            order(362,366,368..375,378,398,401,405,407..408,410..411,
                     414,418,421,425,427,431,435..436,439)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:349714"
     Region          490..774
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..843
                     /gene="LOC104066636"
                     /coded_by="XM_054059411.1:131..2662"
                     /db_xref="GeneID:104066636"
ORIGIN      
        1 magfhsppka pglgllrgkk rgwcvrgllh lfllplacvr aptpsdplsv psrmcvaptp
       61 pplppscacv svllhlllhp slspspfpvc vcrsytvssp pfvcvcvcvl phllplplps
      121 rasvcvaptp spplcvssrv cvlrgsytfs stpfvcigvc sytsflllhr spsppvcaeg
      181 sytsssflcp lpracvcvcs htlfssfsls lllpvpcrvs vrsytffspl frsslpvcvr
      241 vcallhvlll lslpvcvcap tpplslsppp lsppvspcvr gsegkagraa qhrgapaaep
      301 gaepgrnrrw daggqrcrpl karavamrae eplalaapra aggeaeapge ersggsccss
      361 erlvinisgl rfetqlrtls ifpdtllgdp srrvryfdpl rneyffdrnr psfdailyyy
      421 qsggrlrrpv hvpldiflee irfyqlgqea ietfredegf iqeeekplpq hhfqrqvwll
      481 feypessgpa raiaivsvlv ilisivifcl etlpefrqep kgtqtgfges slpgdealll
      541 ppppppsgtp tplhpaagtg pfftdpffli etlciiwfsf ellvrffacp skpefsrnim
      601 niidivaiip yfitlgtela qqqqqkqqpg sssnnggqqq amslailrvi rlvrvfrifk
      661 lsrhskglqi lgktlqasmr elgllifflf igvilfssav yfaetddpds lftsipdafw
      721 wavvsmttvg ygdmypmtig gkivgslcai agvltialpv pvivsnfnyf yhretdheeq
      781 cqythvtcgq qqspfsepkk gdsnqslsks efleaedles mkyanfippn nqgykekkml
      841 tev
//
LOCUS       XP_053915393             843 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily A member 6-like [Cuculus
            canorus].
ACCESSION   XP_053915393
VERSION     XP_053915393.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059418.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..843
                     /product="potassium voltage-gated channel subfamily A
                     member 6-like"
                     /calculated_mol_wt=92406
     Region          361..487
                     /region_name="BTB_POZ_KCNA6"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     voltage-gated channel subfamily A member 6 (KCNA6);
                     cd18407"
                     /db_xref="CDD:349714"
     Site            order(361,394,397,399..400,402,404)
                     /site_type="other"
                     /note="putative beta subunit interface [polypeptide
                     binding]"
                     /db_xref="CDD:349714"
     Site            order(362,366,368..375,378,398,401,405,407..408,410..411,
                     414,418,421,425,427,431,435..436,439)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:349714"
     Region          490..774
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..843
                     /gene="LOC104066636"
                     /coded_by="XM_054059418.1:131..2662"
                     /db_xref="GeneID:104066636"
ORIGIN      
        1 magfhsppka pglgllrgkk rgwcvrgllh lfllplacvr aptpsdplsv psrmcvaptp
       61 pplppscacv svllhlllhp slspspfpvc vcrsytvssp pfvcvcvcvl phllplplps
      121 rasvcvaptp spplcvssrv cvlrgsytfs stpfvcigvc sytsflllhr spsppvcaeg
      181 sytsssflcp lpracvcvcs htlfssfsls lllpvpcrvs vrsytffspl frsslpvcvr
      241 vcallhvlll lslpvcvcap tpplslsppp lsppvspcvr gsegkagraa qhrgapaaep
      301 gaepgrnrrw daggqrcrpl karavamrae eplalaapra aggeaeapge ersggsccss
      361 erlvinisgl rfetqlrtls ifpdtllgdp srrvryfdpl rneyffdrnr psfdailyyy
      421 qsggrlrrpv hvpldiflee irfyqlgqea ietfredegf iqeeekplpq hhfqrqvwll
      481 feypessgpa raiaivsvlv ilisivifcl etlpefrqep kgtqtgfges slpgdealll
      541 ppppppsgtp tplhpaagtg pfftdpffli etlciiwfsf ellvrffacp skpefsrnim
      601 niidivaiip yfitlgtela qqqqqkqqpg sssnnggqqq amslailrvi rlvrvfrifk
      661 lsrhskglqi lgktlqasmr elgllifflf igvilfssav yfaetddpds lftsipdafw
      721 wavvsmttvg ygdmypmtig gkivgslcai agvltialpv pvivsnfnyf yhretdheeq
      781 cqythvtcgq qqspfsepkk gdsnqslsks efleaedles mkyanfippn nqgykekkml
      841 tev
//
LOCUS       XP_053915401             843 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily A member 6-like [Cuculus
            canorus].
ACCESSION   XP_053915401
VERSION     XP_053915401.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059426.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..843
                     /product="potassium voltage-gated channel subfamily A
                     member 6-like"
                     /calculated_mol_wt=92406
     Region          361..487
                     /region_name="BTB_POZ_KCNA6"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     voltage-gated channel subfamily A member 6 (KCNA6);
                     cd18407"
                     /db_xref="CDD:349714"
     Site            order(361,394,397,399..400,402,404)
                     /site_type="other"
                     /note="putative beta subunit interface [polypeptide
                     binding]"
                     /db_xref="CDD:349714"
     Site            order(362,366,368..375,378,398,401,405,407..408,410..411,
                     414,418,421,425,427,431,435..436,439)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:349714"
     Region          490..774
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..843
                     /gene="LOC104066636"
                     /coded_by="XM_054059426.1:131..2662"
                     /db_xref="GeneID:104066636"
ORIGIN      
        1 magfhsppka pglgllrgkk rgwcvrgllh lfllplacvr aptpsdplsv psrmcvaptp
       61 pplppscacv svllhlllhp slspspfpvc vcrsytvssp pfvcvcvcvl phllplplps
      121 rasvcvaptp spplcvssrv cvlrgsytfs stpfvcigvc sytsflllhr spsppvcaeg
      181 sytsssflcp lpracvcvcs htlfssfsls lllpvpcrvs vrsytffspl frsslpvcvr
      241 vcallhvlll lslpvcvcap tpplslsppp lsppvspcvr gsegkagraa qhrgapaaep
      301 gaepgrnrrw daggqrcrpl karavamrae eplalaapra aggeaeapge ersggsccss
      361 erlvinisgl rfetqlrtls ifpdtllgdp srrvryfdpl rneyffdrnr psfdailyyy
      421 qsggrlrrpv hvpldiflee irfyqlgqea ietfredegf iqeeekplpq hhfqrqvwll
      481 feypessgpa raiaivsvlv ilisivifcl etlpefrqep kgtqtgfges slpgdealll
      541 ppppppsgtp tplhpaagtg pfftdpffli etlciiwfsf ellvrffacp skpefsrnim
      601 niidivaiip yfitlgtela qqqqqkqqpg sssnnggqqq amslailrvi rlvrvfrifk
      661 lsrhskglqi lgktlqasmr elgllifflf igvilfssav yfaetddpds lftsipdafw
      721 wavvsmttvg ygdmypmtig gkivgslcai agvltialpv pvivsnfnyf yhretdheeq
      781 cqythvtcgq qqspfsepkk gdsnqslsks efleaedles mkyanfippn nqgykekkml
      841 tev
//
LOCUS       XP_053915409             843 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily A member 6-like [Cuculus
            canorus].
ACCESSION   XP_053915409
VERSION     XP_053915409.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059434.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..843
                     /product="potassium voltage-gated channel subfamily A
                     member 6-like"
                     /calculated_mol_wt=92406
     Region          361..487
                     /region_name="BTB_POZ_KCNA6"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     voltage-gated channel subfamily A member 6 (KCNA6);
                     cd18407"
                     /db_xref="CDD:349714"
     Site            order(361,394,397,399..400,402,404)
                     /site_type="other"
                     /note="putative beta subunit interface [polypeptide
                     binding]"
                     /db_xref="CDD:349714"
     Site            order(362,366,368..375,378,398,401,405,407..408,410..411,
                     414,418,421,425,427,431,435..436,439)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:349714"
     Region          490..774
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..843
                     /gene="LOC104066636"
                     /coded_by="XM_054059434.1:131..2662"
                     /db_xref="GeneID:104066636"
ORIGIN      
        1 magfhsppka pglgllrgkk rgwcvrgllh lfllplacvr aptpsdplsv psrmcvaptp
       61 pplppscacv svllhlllhp slspspfpvc vcrsytvssp pfvcvcvcvl phllplplps
      121 rasvcvaptp spplcvssrv cvlrgsytfs stpfvcigvc sytsflllhr spsppvcaeg
      181 sytsssflcp lpracvcvcs htlfssfsls lllpvpcrvs vrsytffspl frsslpvcvr
      241 vcallhvlll lslpvcvcap tpplslsppp lsppvspcvr gsegkagraa qhrgapaaep
      301 gaepgrnrrw daggqrcrpl karavamrae eplalaapra aggeaeapge ersggsccss
      361 erlvinisgl rfetqlrtls ifpdtllgdp srrvryfdpl rneyffdrnr psfdailyyy
      421 qsggrlrrpv hvpldiflee irfyqlgqea ietfredegf iqeeekplpq hhfqrqvwll
      481 feypessgpa raiaivsvlv ilisivifcl etlpefrqep kgtqtgfges slpgdealll
      541 ppppppsgtp tplhpaagtg pfftdpffli etlciiwfsf ellvrffacp skpefsrnim
      601 niidivaiip yfitlgtela qqqqqkqqpg sssnnggqqq amslailrvi rlvrvfrifk
      661 lsrhskglqi lgktlqasmr elgllifflf igvilfssav yfaetddpds lftsipdafw
      721 wavvsmttvg ygdmypmtig gkivgslcai agvltialpv pvivsnfnyf yhretdheeq
      781 cqythvtcgq qqspfsepkk gdsnqslsks efleaedles mkyanfippn nqgykekkml
      841 tev
//
LOCUS       XP_053915414             843 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily A member 6-like [Cuculus
            canorus].
ACCESSION   XP_053915414
VERSION     XP_053915414.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059439.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..843
                     /product="potassium voltage-gated channel subfamily A
                     member 6-like"
                     /calculated_mol_wt=92406
     Region          361..487
                     /region_name="BTB_POZ_KCNA6"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     voltage-gated channel subfamily A member 6 (KCNA6);
                     cd18407"
                     /db_xref="CDD:349714"
     Site            order(361,394,397,399..400,402,404)
                     /site_type="other"
                     /note="putative beta subunit interface [polypeptide
                     binding]"
                     /db_xref="CDD:349714"
     Site            order(362,366,368..375,378,398,401,405,407..408,410..411,
                     414,418,421,425,427,431,435..436,439)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:349714"
     Region          490..774
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..843
                     /gene="LOC104066636"
                     /coded_by="XM_054059439.1:131..2662"
                     /db_xref="GeneID:104066636"
ORIGIN      
        1 magfhsppka pglgllrgkk rgwcvrgllh lfllplacvr aptpsdplsv psrmcvaptp
       61 pplppscacv svllhlllhp slspspfpvc vcrsytvssp pfvcvcvcvl phllplplps
      121 rasvcvaptp spplcvssrv cvlrgsytfs stpfvcigvc sytsflllhr spsppvcaeg
      181 sytsssflcp lpracvcvcs htlfssfsls lllpvpcrvs vrsytffspl frsslpvcvr
      241 vcallhvlll lslpvcvcap tpplslsppp lsppvspcvr gsegkagraa qhrgapaaep
      301 gaepgrnrrw daggqrcrpl karavamrae eplalaapra aggeaeapge ersggsccss
      361 erlvinisgl rfetqlrtls ifpdtllgdp srrvryfdpl rneyffdrnr psfdailyyy
      421 qsggrlrrpv hvpldiflee irfyqlgqea ietfredegf iqeeekplpq hhfqrqvwll
      481 feypessgpa raiaivsvlv ilisivifcl etlpefrqep kgtqtgfges slpgdealll
      541 ppppppsgtp tplhpaagtg pfftdpffli etlciiwfsf ellvrffacp skpefsrnim
      601 niidivaiip yfitlgtela qqqqqkqqpg sssnnggqqq amslailrvi rlvrvfrifk
      661 lsrhskglqi lgktlqasmr elgllifflf igvilfssav yfaetddpds lftsipdafw
      721 wavvsmttvg ygdmypmtig gkivgslcai agvltialpv pvivsnfnyf yhretdheeq
      781 cqythvtcgq qqspfsepkk gdsnqslsks efleaedles mkyanfippn nqgykekkml
      841 tev
//
LOCUS       XP_053915423             843 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily A member 6-like [Cuculus
            canorus].
ACCESSION   XP_053915423
VERSION     XP_053915423.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059448.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..843
                     /product="potassium voltage-gated channel subfamily A
                     member 6-like"
                     /calculated_mol_wt=92406
     Region          361..487
                     /region_name="BTB_POZ_KCNA6"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     voltage-gated channel subfamily A member 6 (KCNA6);
                     cd18407"
                     /db_xref="CDD:349714"
     Site            order(361,394,397,399..400,402,404)
                     /site_type="other"
                     /note="putative beta subunit interface [polypeptide
                     binding]"
                     /db_xref="CDD:349714"
     Site            order(362,366,368..375,378,398,401,405,407..408,410..411,
                     414,418,421,425,427,431,435..436,439)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:349714"
     Region          490..774
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..843
                     /gene="LOC104066636"
                     /coded_by="XM_054059448.1:131..2662"
                     /db_xref="GeneID:104066636"
ORIGIN      
        1 magfhsppka pglgllrgkk rgwcvrgllh lfllplacvr aptpsdplsv psrmcvaptp
       61 pplppscacv svllhlllhp slspspfpvc vcrsytvssp pfvcvcvcvl phllplplps
      121 rasvcvaptp spplcvssrv cvlrgsytfs stpfvcigvc sytsflllhr spsppvcaeg
      181 sytsssflcp lpracvcvcs htlfssfsls lllpvpcrvs vrsytffspl frsslpvcvr
      241 vcallhvlll lslpvcvcap tpplslsppp lsppvspcvr gsegkagraa qhrgapaaep
      301 gaepgrnrrw daggqrcrpl karavamrae eplalaapra aggeaeapge ersggsccss
      361 erlvinisgl rfetqlrtls ifpdtllgdp srrvryfdpl rneyffdrnr psfdailyyy
      421 qsggrlrrpv hvpldiflee irfyqlgqea ietfredegf iqeeekplpq hhfqrqvwll
      481 feypessgpa raiaivsvlv ilisivifcl etlpefrqep kgtqtgfges slpgdealll
      541 ppppppsgtp tplhpaagtg pfftdpffli etlciiwfsf ellvrffacp skpefsrnim
      601 niidivaiip yfitlgtela qqqqqkqqpg sssnnggqqq amslailrvi rlvrvfrifk
      661 lsrhskglqi lgktlqasmr elgllifflf igvilfssav yfaetddpds lftsipdafw
      721 wavvsmttvg ygdmypmtig gkivgslcai agvltialpv pvivsnfnyf yhretdheeq
      781 cqythvtcgq qqspfsepkk gdsnqslsks efleaedles mkyanfippn nqgykekkml
      841 tev
//
LOCUS       XP_053915432             843 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily A member 6-like [Cuculus
            canorus].
ACCESSION   XP_053915432
VERSION     XP_053915432.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059457.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..843
                     /product="potassium voltage-gated channel subfamily A
                     member 6-like"
                     /calculated_mol_wt=92406
     Region          361..487
                     /region_name="BTB_POZ_KCNA6"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     voltage-gated channel subfamily A member 6 (KCNA6);
                     cd18407"
                     /db_xref="CDD:349714"
     Site            order(361,394,397,399..400,402,404)
                     /site_type="other"
                     /note="putative beta subunit interface [polypeptide
                     binding]"
                     /db_xref="CDD:349714"
     Site            order(362,366,368..375,378,398,401,405,407..408,410..411,
                     414,418,421,425,427,431,435..436,439)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:349714"
     Region          490..774
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..843
                     /gene="LOC104066636"
                     /coded_by="XM_054059457.1:131..2662"
                     /db_xref="GeneID:104066636"
ORIGIN      
        1 magfhsppka pglgllrgkk rgwcvrgllh lfllplacvr aptpsdplsv psrmcvaptp
       61 pplppscacv svllhlllhp slspspfpvc vcrsytvssp pfvcvcvcvl phllplplps
      121 rasvcvaptp spplcvssrv cvlrgsytfs stpfvcigvc sytsflllhr spsppvcaeg
      181 sytsssflcp lpracvcvcs htlfssfsls lllpvpcrvs vrsytffspl frsslpvcvr
      241 vcallhvlll lslpvcvcap tpplslsppp lsppvspcvr gsegkagraa qhrgapaaep
      301 gaepgrnrrw daggqrcrpl karavamrae eplalaapra aggeaeapge ersggsccss
      361 erlvinisgl rfetqlrtls ifpdtllgdp srrvryfdpl rneyffdrnr psfdailyyy
      421 qsggrlrrpv hvpldiflee irfyqlgqea ietfredegf iqeeekplpq hhfqrqvwll
      481 feypessgpa raiaivsvlv ilisivifcl etlpefrqep kgtqtgfges slpgdealll
      541 ppppppsgtp tplhpaagtg pfftdpffli etlciiwfsf ellvrffacp skpefsrnim
      601 niidivaiip yfitlgtela qqqqqkqqpg sssnnggqqq amslailrvi rlvrvfrifk
      661 lsrhskglqi lgktlqasmr elgllifflf igvilfssav yfaetddpds lftsipdafw
      721 wavvsmttvg ygdmypmtig gkivgslcai agvltialpv pvivsnfnyf yhretdheeq
      781 cqythvtcgq qqspfsepkk gdsnqslsks efleaedles mkyanfippn nqgykekkml
      841 tev
//
LOCUS       XP_053915440             843 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily A member 6-like [Cuculus
            canorus].
ACCESSION   XP_053915440
VERSION     XP_053915440.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059465.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..843
                     /product="potassium voltage-gated channel subfamily A
                     member 6-like"
                     /calculated_mol_wt=92406
     Region          361..487
                     /region_name="BTB_POZ_KCNA6"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     voltage-gated channel subfamily A member 6 (KCNA6);
                     cd18407"
                     /db_xref="CDD:349714"
     Site            order(361,394,397,399..400,402,404)
                     /site_type="other"
                     /note="putative beta subunit interface [polypeptide
                     binding]"
                     /db_xref="CDD:349714"
     Site            order(362,366,368..375,378,398,401,405,407..408,410..411,
                     414,418,421,425,427,431,435..436,439)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:349714"
     Region          490..774
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..843
                     /gene="LOC104066636"
                     /coded_by="XM_054059465.1:131..2662"
                     /db_xref="GeneID:104066636"
ORIGIN      
        1 magfhsppka pglgllrgkk rgwcvrgllh lfllplacvr aptpsdplsv psrmcvaptp
       61 pplppscacv svllhlllhp slspspfpvc vcrsytvssp pfvcvcvcvl phllplplps
      121 rasvcvaptp spplcvssrv cvlrgsytfs stpfvcigvc sytsflllhr spsppvcaeg
      181 sytsssflcp lpracvcvcs htlfssfsls lllpvpcrvs vrsytffspl frsslpvcvr
      241 vcallhvlll lslpvcvcap tpplslsppp lsppvspcvr gsegkagraa qhrgapaaep
      301 gaepgrnrrw daggqrcrpl karavamrae eplalaapra aggeaeapge ersggsccss
      361 erlvinisgl rfetqlrtls ifpdtllgdp srrvryfdpl rneyffdrnr psfdailyyy
      421 qsggrlrrpv hvpldiflee irfyqlgqea ietfredegf iqeeekplpq hhfqrqvwll
      481 feypessgpa raiaivsvlv ilisivifcl etlpefrqep kgtqtgfges slpgdealll
      541 ppppppsgtp tplhpaagtg pfftdpffli etlciiwfsf ellvrffacp skpefsrnim
      601 niidivaiip yfitlgtela qqqqqkqqpg sssnnggqqq amslailrvi rlvrvfrifk
      661 lsrhskglqi lgktlqasmr elgllifflf igvilfssav yfaetddpds lftsipdafw
      721 wavvsmttvg ygdmypmtig gkivgslcai agvltialpv pvivsnfnyf yhretdheeq
      781 cqythvtcgq qqspfsepkk gdsnqslsks efleaedles mkyanfippn nqgykekkml
      841 tev
//
LOCUS       XP_053915450             843 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily A member 6-like [Cuculus
            canorus].
ACCESSION   XP_053915450
VERSION     XP_053915450.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059475.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..843
                     /product="potassium voltage-gated channel subfamily A
                     member 6-like"
                     /calculated_mol_wt=92406
     Region          361..487
                     /region_name="BTB_POZ_KCNA6"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     voltage-gated channel subfamily A member 6 (KCNA6);
                     cd18407"
                     /db_xref="CDD:349714"
     Site            order(361,394,397,399..400,402,404)
                     /site_type="other"
                     /note="putative beta subunit interface [polypeptide
                     binding]"
                     /db_xref="CDD:349714"
     Site            order(362,366,368..375,378,398,401,405,407..408,410..411,
                     414,418,421,425,427,431,435..436,439)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:349714"
     Region          490..774
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..843
                     /gene="LOC104066636"
                     /coded_by="XM_054059475.1:131..2662"
                     /db_xref="GeneID:104066636"
ORIGIN      
        1 magfhsppka pglgllrgkk rgwcvrgllh lfllplacvr aptpsdplsv psrmcvaptp
       61 pplppscacv svllhlllhp slspspfpvc vcrsytvssp pfvcvcvcvl phllplplps
      121 rasvcvaptp spplcvssrv cvlrgsytfs stpfvcigvc sytsflllhr spsppvcaeg
      181 sytsssflcp lpracvcvcs htlfssfsls lllpvpcrvs vrsytffspl frsslpvcvr
      241 vcallhvlll lslpvcvcap tpplslsppp lsppvspcvr gsegkagraa qhrgapaaep
      301 gaepgrnrrw daggqrcrpl karavamrae eplalaapra aggeaeapge ersggsccss
      361 erlvinisgl rfetqlrtls ifpdtllgdp srrvryfdpl rneyffdrnr psfdailyyy
      421 qsggrlrrpv hvpldiflee irfyqlgqea ietfredegf iqeeekplpq hhfqrqvwll
      481 feypessgpa raiaivsvlv ilisivifcl etlpefrqep kgtqtgfges slpgdealll
      541 ppppppsgtp tplhpaagtg pfftdpffli etlciiwfsf ellvrffacp skpefsrnim
      601 niidivaiip yfitlgtela qqqqqkqqpg sssnnggqqq amslailrvi rlvrvfrifk
      661 lsrhskglqi lgktlqasmr elgllifflf igvilfssav yfaetddpds lftsipdafw
      721 wavvsmttvg ygdmypmtig gkivgslcai agvltialpv pvivsnfnyf yhretdheeq
      781 cqythvtcgq qqspfsepkk gdsnqslsks efleaedles mkyanfippn nqgykekkml
      841 tev
//
LOCUS       XP_053915462             491 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily A member 1 [Cuculus
            canorus].
ACCESSION   XP_053915462
VERSION     XP_053915462.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059487.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..491
                     /product="potassium voltage-gated channel subfamily A
                     member 1"
                     /calculated_mol_wt=55958
     Region          35..161
                     /region_name="BTB_POZ"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; cl38908"
                     /db_xref="CDD:453885"
     Region          164..414
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..491
                     /gene="KCNA1"
                     /coded_by="XM_054059487.1:1340..2815"
                     /db_xref="GeneID:104066619"
ORIGIN      
        1 mtvmagenmd etsalpghpq dsyqpaahdd heccervvin iaglrfetql ktlaqfpntl
       61 lgnpkkrmry fdplrneyff drnrpsfdai lyyyqsggrl rrpvnvpldm fseeikfyel
      121 geeamekfre degfikdeer plpegeyqrq vwllfeypes sgparviaiv svmvilisiv
      181 ifcletlpel kedkdytlpr idnttqvyks niftdpffvv etlciiwfsf elvvrffscp
      241 sktdffknim nfidivaiip yfitlgtema eregtqkgeq atslailrvi rlvrvfrifk
      301 lsrhskglqi lgqtlkasmr elgllifflf igvilfssav yfaeaeepes hftsipdafw
      361 wavvsmttvg ygdmypvtig gkivgslcai agvltialpv pvivsnfnyf yhretegeeq
      421 aqllhvsspn lasdsdlsrr ssstisksey meieedmnns idnfreanlr tgnctvanqn
      481 cvnksklltd v
//
LOCUS       XP_053915466             491 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily A member 1 [Cuculus
            canorus].
ACCESSION   XP_053915466
VERSION     XP_053915466.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059491.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..491
                     /product="potassium voltage-gated channel subfamily A
                     member 1"
                     /calculated_mol_wt=55958
     Region          35..161
                     /region_name="BTB_POZ"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; cl38908"
                     /db_xref="CDD:453885"
     Region          164..414
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..491
                     /gene="KCNA1"
                     /coded_by="XM_054059491.1:1449..2924"
                     /db_xref="GeneID:104066619"
ORIGIN      
        1 mtvmagenmd etsalpghpq dsyqpaahdd heccervvin iaglrfetql ktlaqfpntl
       61 lgnpkkrmry fdplrneyff drnrpsfdai lyyyqsggrl rrpvnvpldm fseeikfyel
      121 geeamekfre degfikdeer plpegeyqrq vwllfeypes sgparviaiv svmvilisiv
      181 ifcletlpel kedkdytlpr idnttqvyks niftdpffvv etlciiwfsf elvvrffscp
      241 sktdffknim nfidivaiip yfitlgtema eregtqkgeq atslailrvi rlvrvfrifk
      301 lsrhskglqi lgqtlkasmr elgllifflf igvilfssav yfaeaeepes hftsipdafw
      361 wavvsmttvg ygdmypvtig gkivgslcai agvltialpv pvivsnfnyf yhretegeeq
      421 aqllhvsspn lasdsdlsrr ssstisksey meieedmnns idnfreanlr tgnctvanqn
      481 cvnksklltd v
//
LOCUS       XP_053915472             491 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily A member 1 [Cuculus
            canorus].
ACCESSION   XP_053915472
VERSION     XP_053915472.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059497.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..491
                     /product="potassium voltage-gated channel subfamily A
                     member 1"
                     /calculated_mol_wt=55958
     Region          35..161
                     /region_name="BTB_POZ"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; cl38908"
                     /db_xref="CDD:453885"
     Region          164..414
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..491
                     /gene="KCNA1"
                     /coded_by="XM_054059497.1:1244..2719"
                     /db_xref="GeneID:104066619"
ORIGIN      
        1 mtvmagenmd etsalpghpq dsyqpaahdd heccervvin iaglrfetql ktlaqfpntl
       61 lgnpkkrmry fdplrneyff drnrpsfdai lyyyqsggrl rrpvnvpldm fseeikfyel
      121 geeamekfre degfikdeer plpegeyqrq vwllfeypes sgparviaiv svmvilisiv
      181 ifcletlpel kedkdytlpr idnttqvyks niftdpffvv etlciiwfsf elvvrffscp
      241 sktdffknim nfidivaiip yfitlgtema eregtqkgeq atslailrvi rlvrvfrifk
      301 lsrhskglqi lgqtlkasmr elgllifflf igvilfssav yfaeaeepes hftsipdafw
      361 wavvsmttvg ygdmypvtig gkivgslcai agvltialpv pvivsnfnyf yhretegeeq
      421 aqllhvsspn lasdsdlsrr ssstisksey meieedmnns idnfreanlr tgnctvanqn
      481 cvnksklltd v
//
LOCUS       XP_053915481             491 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily A member 1 [Cuculus
            canorus].
ACCESSION   XP_053915481
VERSION     XP_053915481.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059506.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..491
                     /product="potassium voltage-gated channel subfamily A
                     member 1"
                     /calculated_mol_wt=55958
     Region          35..161
                     /region_name="BTB_POZ"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; cl38908"
                     /db_xref="CDD:453885"
     Region          164..414
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..491
                     /gene="KCNA1"
                     /coded_by="XM_054059506.1:1337..2812"
                     /db_xref="GeneID:104066619"
ORIGIN      
        1 mtvmagenmd etsalpghpq dsyqpaahdd heccervvin iaglrfetql ktlaqfpntl
       61 lgnpkkrmry fdplrneyff drnrpsfdai lyyyqsggrl rrpvnvpldm fseeikfyel
      121 geeamekfre degfikdeer plpegeyqrq vwllfeypes sgparviaiv svmvilisiv
      181 ifcletlpel kedkdytlpr idnttqvyks niftdpffvv etlciiwfsf elvvrffscp
      241 sktdffknim nfidivaiip yfitlgtema eregtqkgeq atslailrvi rlvrvfrifk
      301 lsrhskglqi lgqtlkasmr elgllifflf igvilfssav yfaeaeepes hftsipdafw
      361 wavvsmttvg ygdmypvtig gkivgslcai agvltialpv pvivsnfnyf yhretegeeq
      421 aqllhvsspn lasdsdlsrr ssstisksey meieedmnns idnfreanlr tgnctvanqn
      481 cvnksklltd v
//
LOCUS       XP_053915498             418 aa            linear   VRT 09-MAR-2023
DEFINITION  lysosome-associated membrane glycoprotein 1 [Cuculus canorus].
ACCESSION   XP_053915498
VERSION     XP_053915498.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059523.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..418
                     /product="lysosome-associated membrane glycoprotein 1"
                     /calculated_mol_wt=44825
     Region          25..169
                     /region_name="Lamp"
                     /note="Lysosome-associated membrane glycoprotein (Lamp);
                     cl46412"
                     /db_xref="CDD:480752"
     Region          218..366
                     /region_name="Lamp"
                     /note="Lysosome-associated membrane glycoprotein (Lamp);
                     pfam01299"
                     /db_xref="CDD:460152"
     Region          383..412
                     /region_name="TM_EGFR-like"
                     /note="Transmembrane domain of the Epidermal Growth Factor
                     Receptor family of Protein Tyrosine Kinases; cd12087"
                     /db_xref="CDD:213052"
     Site            order(383..384,387..388,390..392,394..395,398)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:213052"
     CDS             1..418
                     /gene="LAMP1"
                     /coded_by="XM_054059523.1:146..1402"
                     /db_xref="GeneID:104056668"
ORIGIN      
        1 marargllaa vallgflqaa ssfevkdssg kvciiadltv afsveykssg qkeyahfflp
       61 qnatvepqss cgqgntshpv lvlgfgaghs lslnfsessd kyeveelvfh ynlsdaalfh
      121 nstagevkrv lrkttiqayv gtqfrcinsk hvsmknvnit fsnvtleayl tngtlstnkt
      181 ecaedmvstt avvpttpkqt tsqvpttspa ptalppnpav gkynvtgpng tcvlasmglq
      241 lnityinkdg kmgldllnfi prnttssgtc dntsaflnlt fektnvifhf alnassekff
      301 lqgvtvsttl pseakvprfe aannsmnelr atvgnsykcs aeenlqvtdk alvnvfnvqi
      361 qafkidgdkf gaveecqlde nnmlipiivg aalaglvliv liayligrkr shagyqti
//
LOCUS       XP_053915507             312 aa            linear   VRT 09-MAR-2023
DEFINITION  growth hormone-regulated TBC protein 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053915507
VERSION     XP_053915507.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059532.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..312
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..312
                     /product="growth hormone-regulated TBC protein 1 isoform
                     X1"
                     /calculated_mol_wt=35920
     Region          41..254
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     CDS             1..312
                     /gene="GRTP1"
                     /coded_by="XM_054059532.1:262..1200"
                     /db_xref="GeneID:104056669"
ORIGIN      
        1 mvqatkgeeq yteefkrksi lmsvtlnlqk laldvrvkry irkgipnehr aliwmivsga
       61 qtnmeenpgy yyrllegekn dklveaiktd mnrtfpdnvk frktadpclq htlynvlvay
      121 ghhnkavgyc qgmnfiagyl ilitkneees fwlldaligr ilpdyyspam lglktdqevl
      181 gelvkmkvpa vaelmerhgv mwtlvvsrwf iclfidilpv etvlriwdcl fyegskiifr
      241 valtlikqhq afileatnfp dicdkfkqit kgtfvtechs fmqkiftdpg slsmatinkl
      301 retcreklls qg
//
LOCUS       XP_053915514             291 aa            linear   VRT 09-MAR-2023
DEFINITION  growth hormone-regulated TBC protein 1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053915514
VERSION     XP_053915514.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059539.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..291
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..291
                     /product="growth hormone-regulated TBC protein 1 isoform
                     X2"
                     /calculated_mol_wt=33422
     Region          20..233
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     CDS             1..291
                     /gene="GRTP1"
                     /coded_by="XM_054059539.1:36..911"
                     /db_xref="GeneID:104056669"
ORIGIN      
        1 msvtlnlqkl aldvrvkryi rkgipnehra liwmivsgaq tnmeenpgyy yrllegeknd
       61 klveaiktdm nrtfpdnvkf rktadpclqh tlynvlvayg hhnkavgycq gmnfiagyli
      121 litkneeesf wlldaligri lpdyyspaml glktdqevlg elvkmkvpav aelmerhgvm
      181 wtlvvsrwfi clfidilpve tvlriwdclf yegskiifrv altlikqhqa fileatnfpd
      241 icdkfkqitk gtfvtechsf mqkiftdpgs lsmatinklr etcrekllsq g
//
LOCUS       XP_053915522             339 aa            linear   VRT 09-MAR-2023
DEFINITION  growth hormone-regulated TBC protein 1 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053915522
VERSION     XP_053915522.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059547.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..339
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..339
                     /product="growth hormone-regulated TBC protein 1 isoform
                     X3"
                     /calculated_mol_wt=39242
     Region          68..281
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     CDS             1..339
                     /gene="GRTP1"
                     /coded_by="XM_054059547.1:391..1410"
                     /db_xref="GeneID:104056669"
ORIGIN      
        1 merpgggrdw pyrvdpygfe rpedfdyasy eaffsrylvv ltrraikwsk llkgknsiqk
       61 slkvkryirk gipnehrali wmivsgaqtn meenpgyyyr llegekndkl veaiktdmnr
      121 tfpdnvkfrk tadpclqhtl ynvlvayghh nkavgycqgm nfiagylili tkneeesfwl
      181 ldaligrilp dyyspamlgl ktdqevlgel vkmkvpavae lmerhgvmwt lvvsrwficl
      241 fidilpvetv lriwdclfye gskiifrval tlikqhqafi leatnfpdic dkfkqitkgt
      301 fvtechsfmq kiftdpgsls matinklret crekllsqg
//
LOCUS       XP_053915534             125 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily E member 2 [Cuculus
            canorus].
ACCESSION   XP_053915534
VERSION     XP_053915534.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059559.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..125
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..125
                     /product="potassium voltage-gated channel subfamily E
                     member 2"
                     /calculated_mol_wt=14492
     Region          29..113
                     /region_name="ISK_Channel"
                     /note="Slow voltage-gated potassium channel; pfam02060"
                     /db_xref="CDD:460432"
     CDS             1..125
                     /gene="KCNE2"
                     /coded_by="XM_054059559.1:5175..5552"
                     /db_xref="GeneID:104064749"
ORIGIN      
        1 maemrnftqa vedifketfl tymngwrknm teaadklqak vdaenfdyvi lylmvmigmf
       61 sfiivailvs tvkskrrehs kdpyhqyive dwgekyksqv lnrddlkcvi henmgardkt
      121 spasp
//
LOCUS       XP_009565410              62 aa            linear   VRT 09-MAR-2023
DEFINITION  small integral membrane protein 11 [Cuculus canorus].
ACCESSION   XP_009565410
VERSION     XP_009565410.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009567115.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..62
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..62
                     /product="small integral membrane protein 11"
                     /calculated_mol_wt=7205
     Region          8..>41
                     /region_name="FAM165"
                     /note="FAM165 family; pfam14981"
                     /db_xref="CDD:464419"
     CDS             1..62
                     /gene="SMIM11"
                     /coded_by="XM_009567115.2:90..278"
                     /db_xref="GeneID:104064748"
ORIGIN      
        1 mvafnwkale nfpllmyila aktlilclaf agvkmyqskk ieerlkrere eklkteaekk
       61 dd
//
LOCUS       XP_053915558             660 aa            linear   VRT 09-MAR-2023
DEFINITION  kelch-like protein 35 isoform X1 [Cuculus canorus].
ACCESSION   XP_053915558
VERSION     XP_053915558.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059583.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..660
                     /product="kelch-like protein 35 isoform X1"
                     /calculated_mol_wt=73985
     Region          99..226
                     /region_name="BTB_POZ_KLHL35"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in Kelch-like
                     protein 35 (KLHL35); cd18265"
                     /db_xref="CDD:349574"
     Region          118..587
                     /region_name="PHA03098"
                     /note="kelch-like protein; Provisional"
                     /db_xref="CDD:222983"
     Region          410..449
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          453..497
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          500..545
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          548..587
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..660
                     /gene="KLHL35"
                     /coded_by="XM_054059583.1:1374..3356"
                     /db_xref="GeneID:104064123"
ORIGIN      
        1 mgqcqpfsvs ktvevvvegl gslihsplse ivnschhfsa tvvlcfsdtp lntvlsscll
       61 hcfparmhrm mkeessfrts slenvtrdps keklhmklcs gschaeqilq tlntyrqsgi
      121 ftdvvllidg qefpchratl sanskyfqam fggnlkeshq diiniqkisa stmsllldym
      181 yggniiiqed nvegilelsd llqisklrda citflegqlh pcnclgimkf adsfsiaslt
      241 ekskrfmlec fvevscheef lemgvkelve ylsdeqldvp keevvfeavm rwvrhdipar
      301 kgalkdlleh vrlplldpty flekvetdgl iqdskecvpl lhearkyyil gneisslrsr
      361 prrfmelaev iiiiggcdkk gllklpftdl yhpksrqwta lssmpgytks efatctlknd
      421 vyisgghiss ndvwmlssql nvwikvaclq kgrwrhkmat lqgkiyavgg fdgfyrlssv
      481 ecydtfsnsw stlaplpqav ssaavvscln klyvmggavd dtantdkvqc ydpennkwtl
      541 lsptpfyqrc isavcldnii yvvggllski fsynprkdsw qevatlpgpl vrtrfrkeap
      601 sllsvfriaa icallrlkar kmhcelgfeh vntssaeqlk hmylppvsil iggslshita
//
LOCUS       XP_009564713             652 aa            linear   VRT 09-MAR-2023
DEFINITION  kelch-like protein 35 isoform X2 [Cuculus canorus].
ACCESSION   XP_009564713
VERSION     XP_009564713.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566418.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564713.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..652
                     /product="kelch-like protein 35 isoform X2"
                     /calculated_mol_wt=73021
     Region          99..226
                     /region_name="BTB_POZ_KLHL35"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in Kelch-like
                     protein 35 (KLHL35); cd18265"
                     /db_xref="CDD:349574"
     Region          118..607
                     /region_name="PHA03098"
                     /note="kelch-like protein; Provisional"
                     /db_xref="CDD:222983"
     Region          410..449
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          453..497
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          500..545
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          548..587
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          590..635
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          601..646
                     /region_name="Kelch"
                     /note="Kelch domain; smart00612"
                     /db_xref="CDD:128874"
     CDS             1..652
                     /gene="KLHL35"
                     /coded_by="XM_009566418.2:1370..3328"
                     /db_xref="GeneID:104064123"
ORIGIN      
        1 mgqcqpfsvs ktvevvvegl gslihsplse ivnschhfsa tvvlcfsdtp lntvlsscll
       61 hcfparmhrm mkeessfrts slenvtrdps keklhmklcs gschaeqilq tlntyrqsgi
      121 ftdvvllidg qefpchratl sanskyfqam fggnlkeshq diiniqkisa stmsllldym
      181 yggniiiqed nvegilelsd llqisklrda citflegqlh pcnclgimkf adsfsiaslt
      241 ekskrfmlec fvevscheef lemgvkelve ylsdeqldvp keevvfeavm rwvrhdipar
      301 kgalkdlleh vrlplldpty flekvetdgl iqdskecvpl lhearkyyil gneisslrsr
      361 prrfmelaev iiiiggcdkk gllklpftdl yhpksrqwta lssmpgytks efatctlknd
      421 vyisgghiss ndvwmlssql nvwikvaclq kgrwrhkmat lqgkiyavgg fdgfyrlssv
      481 ecydtfsnsw stlaplpqav ssaavvscln klyvmggavd dtantdkvqc ydpennkwtl
      541 lsptpfyqrc isavcldnii yvvggllski fsynprkdsw qevatlpgpl escgltvceg
      601 kiyilggrde ngegtdkaft fdpvtgiveq qppmqrctsy hgcvtilqrm nr
//
LOCUS       XP_053915574             649 aa            linear   VRT 09-MAR-2023
DEFINITION  kelch-like protein 35 isoform X3 [Cuculus canorus].
ACCESSION   XP_053915574
VERSION     XP_053915574.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059599.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..649
                     /product="kelch-like protein 35 isoform X3"
                     /calculated_mol_wt=72883
     Region          88..215
                     /region_name="BTB_POZ_KLHL35"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in Kelch-like
                     protein 35 (KLHL35); cd18265"
                     /db_xref="CDD:349574"
     Region          107..576
                     /region_name="PHA03098"
                     /note="kelch-like protein; Provisional"
                     /db_xref="CDD:222983"
     Region          399..438
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          442..486
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          489..534
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          537..576
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..649
                     /gene="KLHL35"
                     /coded_by="XM_054059599.1:56..2005"
                     /db_xref="GeneID:104064123"
ORIGIN      
        1 mmqwleafkv qthckgsshd vsstssmkag spspglfrqs nsswleppdq vssstmhrmm
       61 keessfrtss lenvtrdpsk eklhmklcsg schaeqilqt lntyrqsgif tdvvllidgq
      121 efpchratls anskyfqamf ggnlkeshqd iiniqkisas tmsllldymy ggniiiqedn
      181 vegilelsdl lqisklrdac itflegqlhp cnclgimkfa dsfsiaslte kskrfmlecf
      241 vevscheefl emgvkelvey lsdeqldvpk eevvfeavmr wvrhdipark galkdllehv
      301 rlplldptyf lekvetdgli qdskecvpll hearkyyilg neisslrsrp rrfmelaevi
      361 iiiggcdkkg llklpftdly hpksrqwtal ssmpgytkse fatctlkndv yisgghissn
      421 dvwmlssqln vwikvaclqk grwrhkmatl qgkiyavggf dgfyrlssve cydtfsnsws
      481 tlaplpqavs saavvsclnk lyvmggavdd tantdkvqcy dpennkwtll sptpfyqrci
      541 savcldniiy vvggllskif synprkdswq evatlpgplv rtrfrkeaps llsvfriaai
      601 callrlkark mhcelgfehv ntssaeqlkh mylppvsili ggslshita
//
LOCUS       XP_053915582             594 aa            linear   VRT 09-MAR-2023
DEFINITION  kelch-like protein 35 isoform X4 [Cuculus canorus].
ACCESSION   XP_053915582
VERSION     XP_053915582.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059607.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..594
                     /product="kelch-like protein 35 isoform X4"
                     /calculated_mol_wt=66929
     Region          33..160
                     /region_name="BTB_POZ_KLHL35"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in Kelch-like
                     protein 35 (KLHL35); cd18265"
                     /db_xref="CDD:349574"
     Region          52..521
                     /region_name="PHA03098"
                     /note="kelch-like protein; Provisional"
                     /db_xref="CDD:222983"
     Region          344..383
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          387..431
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          434..479
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          482..521
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..594
                     /gene="KLHL35"
                     /coded_by="XM_054059607.1:952..2736"
                     /db_xref="GeneID:104064123"
ORIGIN      
        1 mhrmmkeess frtsslenvt rdpskeklhm klcsgschae qilqtlntyr qsgiftdvvl
       61 lidgqefpch ratlsansky fqamfggnlk eshqdiiniq kisastmsll ldymyggnii
      121 iqednvegil elsdllqisk lrdacitfle gqlhpcnclg imkfadsfsi asltekskrf
      181 mlecfvevsc heeflemgvk elveylsdeq ldvpkeevvf eavmrwvrhd iparkgalkd
      241 llehvrlpll dptyflekve tdgliqdske cvpllheark yyilgneiss lrsrprrfme
      301 laeviiiigg cdkkgllklp ftdlyhpksr qwtalssmpg ytksefatct lkndvyisgg
      361 hissndvwml ssqlnvwikv aclqkgrwrh kmatlqgkiy avggfdgfyr lssvecydtf
      421 snswstlapl pqavssaavv sclnklyvmg gavddtantd kvqcydpenn kwtllsptpf
      481 yqrcisavcl dniiyvvggl lskifsynpr kdswqevatl pgplvrtrfr keapsllsvf
      541 riaaicallr lkarkmhcel gfehvntssa eqlkhmylpp vsiliggsls hita
//
LOCUS       XP_053915588             594 aa            linear   VRT 09-MAR-2023
DEFINITION  kelch-like protein 35 isoform X4 [Cuculus canorus].
ACCESSION   XP_053915588
VERSION     XP_053915588.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059613.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..594
                     /product="kelch-like protein 35 isoform X4"
                     /calculated_mol_wt=66929
     Region          33..160
                     /region_name="BTB_POZ_KLHL35"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in Kelch-like
                     protein 35 (KLHL35); cd18265"
                     /db_xref="CDD:349574"
     Region          52..521
                     /region_name="PHA03098"
                     /note="kelch-like protein; Provisional"
                     /db_xref="CDD:222983"
     Region          344..383
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          387..431
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          434..479
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          482..521
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..594
                     /gene="KLHL35"
                     /coded_by="XM_054059613.1:948..2732"
                     /db_xref="GeneID:104064123"
ORIGIN      
        1 mhrmmkeess frtsslenvt rdpskeklhm klcsgschae qilqtlntyr qsgiftdvvl
       61 lidgqefpch ratlsansky fqamfggnlk eshqdiiniq kisastmsll ldymyggnii
      121 iqednvegil elsdllqisk lrdacitfle gqlhpcnclg imkfadsfsi asltekskrf
      181 mlecfvevsc heeflemgvk elveylsdeq ldvpkeevvf eavmrwvrhd iparkgalkd
      241 llehvrlpll dptyflekve tdgliqdske cvpllheark yyilgneiss lrsrprrfme
      301 laeviiiigg cdkkgllklp ftdlyhpksr qwtalssmpg ytksefatct lkndvyisgg
      361 hissndvwml ssqlnvwikv aclqkgrwrh kmatlqgkiy avggfdgfyr lssvecydtf
      421 snswstlapl pqavssaavv sclnklyvmg gavddtantd kvqcydpenn kwtllsptpf
      481 yqrcisavcl dniiyvvggl lskifsynpr kdswqevatl pgplvrtrfr keapsllsvf
      541 riaaicallr lkarkmhcel gfehvntssa eqlkhmylpp vsiliggsls hita
//
LOCUS       XP_053915595             594 aa            linear   VRT 09-MAR-2023
DEFINITION  kelch-like protein 35 isoform X4 [Cuculus canorus].
ACCESSION   XP_053915595
VERSION     XP_053915595.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059620.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..594
                     /product="kelch-like protein 35 isoform X4"
                     /calculated_mol_wt=66929
     Region          33..160
                     /region_name="BTB_POZ_KLHL35"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in Kelch-like
                     protein 35 (KLHL35); cd18265"
                     /db_xref="CDD:349574"
     Region          52..521
                     /region_name="PHA03098"
                     /note="kelch-like protein; Provisional"
                     /db_xref="CDD:222983"
     Region          344..383
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          387..431
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          434..479
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          482..521
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..594
                     /gene="KLHL35"
                     /coded_by="XM_054059620.1:225..2009"
                     /db_xref="GeneID:104064123"
ORIGIN      
        1 mhrmmkeess frtsslenvt rdpskeklhm klcsgschae qilqtlntyr qsgiftdvvl
       61 lidgqefpch ratlsansky fqamfggnlk eshqdiiniq kisastmsll ldymyggnii
      121 iqednvegil elsdllqisk lrdacitfle gqlhpcnclg imkfadsfsi asltekskrf
      181 mlecfvevsc heeflemgvk elveylsdeq ldvpkeevvf eavmrwvrhd iparkgalkd
      241 llehvrlpll dptyflekve tdgliqdske cvpllheark yyilgneiss lrsrprrfme
      301 laeviiiigg cdkkgllklp ftdlyhpksr qwtalssmpg ytksefatct lkndvyisgg
      361 hissndvwml ssqlnvwikv aclqkgrwrh kmatlqgkiy avggfdgfyr lssvecydtf
      421 snswstlapl pqavssaavv sclnklyvmg gavddtantd kvqcydpenn kwtllsptpf
      481 yqrcisavcl dniiyvvggl lskifsynpr kdswqevatl pgplvrtrfr keapsllsvf
      541 riaaicallr lkarkmhcel gfehvntssa eqlkhmylpp vsiliggsls hita
//
LOCUS       XP_053915605             599 aa            linear   VRT 09-MAR-2023
DEFINITION  glycerophosphodiester phosphodiesterase domain-containing protein 5
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053915605
VERSION     XP_053915605.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059630.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..599
                     /product="glycerophosphodiester phosphodiesterase
                     domain-containing protein 5 isoform X1"
                     /calculated_mol_wt=69237
     Region          227..581
                     /region_name="GDPD_GDE2"
                     /note="Glycerophosphodiester phosphodiesterase domain of
                     mammalian glycerophosphodiester phosphodiesterase GDE2 and
                     similar proteins; cd08608"
                     /db_xref="CDD:176550"
     Site            order(233,260,262,275,358,394,454)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:176550"
     Site            order(233,275)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:176550"
     Site            order(260,262,358)
                     /site_type="other"
                     /note="putative metal binding site [ion binding]"
                     /db_xref="CDD:176550"
     CDS             1..599
                     /gene="GDPD5"
                     /coded_by="XM_054059630.1:233..2032"
                     /db_xref="GeneID:104064122"
ORIGIN      
        1 mvkhqplqyy epqlclsclt giygcrwkry qrshddttkw erlwflilts sffltlvwfy
       61 fwwevhndyn einwflynrm gywsdwsipi lvttaagfty itvllilalc hiavgqqmnl
      121 hwfhkiglmt tlittvvtms siaqlwddew emvfislqat apflhigala avtalswlia
      181 gqfartekat sqmlmftayl avvvalylvp ltisspcime kkalgpkpai ighrgapmla
      241 pentlmsfqk ameqkiygvq advvlsydgv pflmhdrtlr rttnveelfp erayehssmf
      301 nwtdleklna gewflqndpf wtagslsksd yleaanqsvc rladmlevik dnmslilnfq
      361 dlppahpyyn tyinitleti lasgirqqav mwlpdierql vrqiapgfqq tsdlkldaer
      421 mrekgivkln lrytkvtned vrdyamanls vnlytvnepw lysilwcagv qsvtsdsshi
      481 lrkvpfpiwl mppdeyhliw itsdlisfii ivgvfvfqny hmirwrlgsi rtynpeqiml
      541 saavrrssrd vkimkeklif seinngvett delslcseng yanemvtptd hrdtklrmn
//
LOCUS       XP_053915613             599 aa            linear   VRT 09-MAR-2023
DEFINITION  glycerophosphodiester phosphodiesterase domain-containing protein 5
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053915613
VERSION     XP_053915613.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059638.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..599
                     /product="glycerophosphodiester phosphodiesterase
                     domain-containing protein 5 isoform X1"
                     /calculated_mol_wt=69237
     Region          227..581
                     /region_name="GDPD_GDE2"
                     /note="Glycerophosphodiester phosphodiesterase domain of
                     mammalian glycerophosphodiester phosphodiesterase GDE2 and
                     similar proteins; cd08608"
                     /db_xref="CDD:176550"
     Site            order(233,260,262,275,358,394,454)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:176550"
     Site            order(233,275)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:176550"
     Site            order(260,262,358)
                     /site_type="other"
                     /note="putative metal binding site [ion binding]"
                     /db_xref="CDD:176550"
     CDS             1..599
                     /gene="GDPD5"
                     /coded_by="XM_054059638.1:196..1995"
                     /db_xref="GeneID:104064122"
ORIGIN      
        1 mvkhqplqyy epqlclsclt giygcrwkry qrshddttkw erlwflilts sffltlvwfy
       61 fwwevhndyn einwflynrm gywsdwsipi lvttaagfty itvllilalc hiavgqqmnl
      121 hwfhkiglmt tlittvvtms siaqlwddew emvfislqat apflhigala avtalswlia
      181 gqfartekat sqmlmftayl avvvalylvp ltisspcime kkalgpkpai ighrgapmla
      241 pentlmsfqk ameqkiygvq advvlsydgv pflmhdrtlr rttnveelfp erayehssmf
      301 nwtdleklna gewflqndpf wtagslsksd yleaanqsvc rladmlevik dnmslilnfq
      361 dlppahpyyn tyinitleti lasgirqqav mwlpdierql vrqiapgfqq tsdlkldaer
      421 mrekgivkln lrytkvtned vrdyamanls vnlytvnepw lysilwcagv qsvtsdsshi
      481 lrkvpfpiwl mppdeyhliw itsdlisfii ivgvfvfqny hmirwrlgsi rtynpeqiml
      541 saavrrssrd vkimkeklif seinngvett delslcseng yanemvtptd hrdtklrmn
//
LOCUS       XP_053915624             599 aa            linear   VRT 09-MAR-2023
DEFINITION  glycerophosphodiester phosphodiesterase domain-containing protein 5
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053915624
VERSION     XP_053915624.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059649.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..599
                     /product="glycerophosphodiester phosphodiesterase
                     domain-containing protein 5 isoform X1"
                     /calculated_mol_wt=69237
     Region          227..581
                     /region_name="GDPD_GDE2"
                     /note="Glycerophosphodiester phosphodiesterase domain of
                     mammalian glycerophosphodiester phosphodiesterase GDE2 and
                     similar proteins; cd08608"
                     /db_xref="CDD:176550"
     Site            order(233,260,262,275,358,394,454)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:176550"
     Site            order(233,275)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:176550"
     Site            order(260,262,358)
                     /site_type="other"
                     /note="putative metal binding site [ion binding]"
                     /db_xref="CDD:176550"
     CDS             1..599
                     /gene="GDPD5"
                     /coded_by="XM_054059649.1:143..1942"
                     /db_xref="GeneID:104064122"
ORIGIN      
        1 mvkhqplqyy epqlclsclt giygcrwkry qrshddttkw erlwflilts sffltlvwfy
       61 fwwevhndyn einwflynrm gywsdwsipi lvttaagfty itvllilalc hiavgqqmnl
      121 hwfhkiglmt tlittvvtms siaqlwddew emvfislqat apflhigala avtalswlia
      181 gqfartekat sqmlmftayl avvvalylvp ltisspcime kkalgpkpai ighrgapmla
      241 pentlmsfqk ameqkiygvq advvlsydgv pflmhdrtlr rttnveelfp erayehssmf
      301 nwtdleklna gewflqndpf wtagslsksd yleaanqsvc rladmlevik dnmslilnfq
      361 dlppahpyyn tyinitleti lasgirqqav mwlpdierql vrqiapgfqq tsdlkldaer
      421 mrekgivkln lrytkvtned vrdyamanls vnlytvnepw lysilwcagv qsvtsdsshi
      481 lrkvpfpiwl mppdeyhliw itsdlisfii ivgvfvfqny hmirwrlgsi rtynpeqiml
      541 saavrrssrd vkimkeklif seinngvett delslcseng yanemvtptd hrdtklrmn
//
LOCUS       XP_053915631             599 aa            linear   VRT 09-MAR-2023
DEFINITION  glycerophosphodiester phosphodiesterase domain-containing protein 5
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053915631
VERSION     XP_053915631.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059656.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..599
                     /product="glycerophosphodiester phosphodiesterase
                     domain-containing protein 5 isoform X1"
                     /calculated_mol_wt=69237
     Region          227..581
                     /region_name="GDPD_GDE2"
                     /note="Glycerophosphodiester phosphodiesterase domain of
                     mammalian glycerophosphodiester phosphodiesterase GDE2 and
                     similar proteins; cd08608"
                     /db_xref="CDD:176550"
     Site            order(233,260,262,275,358,394,454)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:176550"
     Site            order(233,275)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:176550"
     Site            order(260,262,358)
                     /site_type="other"
                     /note="putative metal binding site [ion binding]"
                     /db_xref="CDD:176550"
     CDS             1..599
                     /gene="GDPD5"
                     /coded_by="XM_054059656.1:78..1877"
                     /db_xref="GeneID:104064122"
ORIGIN      
        1 mvkhqplqyy epqlclsclt giygcrwkry qrshddttkw erlwflilts sffltlvwfy
       61 fwwevhndyn einwflynrm gywsdwsipi lvttaagfty itvllilalc hiavgqqmnl
      121 hwfhkiglmt tlittvvtms siaqlwddew emvfislqat apflhigala avtalswlia
      181 gqfartekat sqmlmftayl avvvalylvp ltisspcime kkalgpkpai ighrgapmla
      241 pentlmsfqk ameqkiygvq advvlsydgv pflmhdrtlr rttnveelfp erayehssmf
      301 nwtdleklna gewflqndpf wtagslsksd yleaanqsvc rladmlevik dnmslilnfq
      361 dlppahpyyn tyinitleti lasgirqqav mwlpdierql vrqiapgfqq tsdlkldaer
      421 mrekgivkln lrytkvtned vrdyamanls vnlytvnepw lysilwcagv qsvtsdsshi
      481 lrkvpfpiwl mppdeyhliw itsdlisfii ivgvfvfqny hmirwrlgsi rtynpeqiml
      541 saavrrssrd vkimkeklif seinngvett delslcseng yanemvtptd hrdtklrmn
//
LOCUS       XP_009564712             594 aa            linear   VRT 09-MAR-2023
DEFINITION  glycerophosphodiester phosphodiesterase domain-containing protein 5
            isoform X2 [Cuculus canorus].
ACCESSION   XP_009564712
VERSION     XP_009564712.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566417.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564712.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..594
                     /product="glycerophosphodiester phosphodiesterase
                     domain-containing protein 5 isoform X2"
                     /calculated_mol_wt=68550
     Region          227..576
                     /region_name="GDPD_GDE2"
                     /note="Glycerophosphodiester phosphodiesterase domain of
                     mammalian glycerophosphodiester phosphodiesterase GDE2 and
                     similar proteins; cd08608"
                     /db_xref="CDD:176550"
     Site            order(233,260,262,275,358,394,454)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:176550"
     Site            order(233,275)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:176550"
     Site            order(260,262,358)
                     /site_type="other"
                     /note="putative metal binding site [ion binding]"
                     /db_xref="CDD:176550"
     CDS             1..594
                     /gene="GDPD5"
                     /coded_by="XM_009566417.2:232..2016"
                     /db_xref="GeneID:104064122"
ORIGIN      
        1 mvkhqplqyy epqlclsclt giygcrwkry qrshddttkw erlwflilts sffltlvwfy
       61 fwwevhndyn einwflynrm gywsdwsipi lvttaagfty itvllilalc hiavgqqmnl
      121 hwfhkiglmt tlittvvtms siaqlwddew emvfislqat apflhigala avtalswlia
      181 gqfartekat sqmlmftayl avvvalylvp ltisspcime kkalgpkpai ighrgapmla
      241 pentlmsfqk ameqkiygvq advvlsydgv pflmhdrtlr rttnveelfp erayehssmf
      301 nwtdleklna gewflqndpf wtagslsksd yleaanqsvc rladmlevik dnmslilnfq
      361 dlppahpyyn tyinitleti lasgirqqav mwlpdierql vrqiapgfqq tsdlkldaer
      421 mrekgivkln lrytkvtned vrdyamanls vnlytvnepw lysilwcagv qsvtsdsshi
      481 lrkvpfpiwl mppdeyhliw itsdlisfii ivgvfvfqkw rlgsirtynp eqimlsaavr
      541 rssrdvkimk eklifseinn gvettdelsl csengyanem vtptdhrdtk lrmn
//
LOCUS       XP_053915646             547 aa            linear   VRT 09-MAR-2023
DEFINITION  glycerophosphodiester phosphodiesterase domain-containing protein 5
            isoform X3 [Cuculus canorus].
ACCESSION   XP_053915646
VERSION     XP_053915646.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059671.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..547
                     /product="glycerophosphodiester phosphodiesterase
                     domain-containing protein 5 isoform X3"
                     /calculated_mol_wt=62260
     Region          175..529
                     /region_name="GDPD_GDE2"
                     /note="Glycerophosphodiester phosphodiesterase domain of
                     mammalian glycerophosphodiester phosphodiesterase GDE2 and
                     similar proteins; cd08608"
                     /db_xref="CDD:176550"
     Site            order(181,208,210,223,306,342,402)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:176550"
     Site            order(181,223)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:176550"
     Site            order(208,210,306)
                     /site_type="other"
                     /note="putative metal binding site [ion binding]"
                     /db_xref="CDD:176550"
     CDS             1..547
                     /gene="GDPD5"
                     /coded_by="XM_054059671.1:233..1876"
                     /db_xref="GeneID:104064122"
ORIGIN      
        1 mkstgldlly cslgirdivs nrflynrmgy wsdwsipilv ttaagftyit vllilalchi
       61 avgqqmnlhw fhkiglmttl ittvvtmssi aqlwddewem vfislqatap flhigalaav
      121 talswliagq fartekatsq mlmftaylav vvalylvplt isspcimekk algpkpaiig
      181 hrgapmlape ntlmsfqkam eqkiygvqad vvlsydgvpf lmhdrtlrrt tnveelfper
      241 ayehssmfnw tdleklnage wflqndpfwt agslsksdyl eaanqsvcrl admlevikdn
      301 mslilnfqdl ppahpyynty initletila sgirqqavmw lpdierqlvr qiapgfqqts
      361 dlkldaermr ekgivklnlr ytkvtnedvr dyamanlsvn lytvnepwly silwcagvqs
      421 vtsdsshilr kvpfpiwlmp pdeyhliwit sdlisfiiiv gvfvfqnyhm irwrlgsirt
      481 ynpeqimlsa avrrssrdvk imkeklifse inngvettde lslcsengya nemvtptdhr
      541 dtklrmn
//
LOCUS       XP_009569575             394 aa            linear   VRT 09-MAR-2023
DEFINITION  protein arginine N-methyltransferase 8 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009569575
VERSION     XP_009569575.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009571280.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..394
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..394
                     /product="protein arginine N-methyltransferase 8 isoform
                     X1"
                     /calculated_mol_wt=45175
     Region          86..>259
                     /region_name="COG4076"
                     /note="Predicted RNA methylase [General function
                     prediction only]"
                     /db_xref="CDD:443253"
     CDS             1..394
                     /gene="PRMT8"
                     /coded_by="XM_009571280.2:638..1822"
                     /db_xref="GeneID:104068407"
ORIGIN      
        1 mgmkhssrcl llrrkmaena adctevcpip aqppqptvvp kpvqsvihvp lqpscpgrgk
       61 maklinpeem tsrdyyfdsy ahfgiheeml kdevrtltyr nsmyhnkhvf kdkivldvgs
      121 gtgilsmfaa kagakkvygi ecssisdyse kiikanhlds iitifkgkve evelpvdkvd
      181 iiisewmgyc lfyesmlntv ifardkwlkp gglmfpdraa lyvvaiedrq ykdfkihwwe
      241 nvygfdmtci rdvamkeplv divdpkqvvt naclikevdi ytvkteelaf tsafclqiqr
      301 ndyihalvty fnieftkchk kmgfstapda pythwkqtvf yledyltvrr geeiygtism
      361 kpnaknvrdl dftvdldfkg qlcemsvsnd ykmr
//
LOCUS       XP_053915662             342 aa            linear   VRT 09-MAR-2023
DEFINITION  protein arginine N-methyltransferase 8 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053915662
VERSION     XP_053915662.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059687.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..342
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..342
                     /product="protein arginine N-methyltransferase 8 isoform
                     X2"
                     /calculated_mol_wt=39373
     Region          <88..>207
                     /region_name="COG4076"
                     /note="Predicted RNA methylase [General function
                     prediction only]"
                     /db_xref="CDD:443253"
     CDS             1..342
                     /gene="PRMT8"
                     /coded_by="XM_054059687.1:677..1705"
                     /db_xref="GeneID:104068407"
ORIGIN      
        1 mgmkhssrcl llrrkmaena adctevcpip aqppqptvvp kpvqsvihvp lqpscpgrgk
       61 maklinpeem tsrdyyfdsy ahfgiheiec ssisdyseki ikanhldsii tifkgkveev
      121 elpvdkvdii isewmgyclf yesmlntvif ardkwlkpgg lmfpdraaly vvaiedrqyk
      181 dfkihwwenv ygfdmtcird vamkeplvdi vdpkqvvtna clikevdiyt vkteelafts
      241 afclqiqrnd yihalvtyfn ieftkchkkm gfstapdapy thwkqtvfyl edyltvrrge
      301 eiygtismkp naknvrdldf tvdldfkgql cemsvsndyk mr
//
LOCUS       XP_053915671             334 aa            linear   VRT 09-MAR-2023
DEFINITION  protein arginine N-methyltransferase 8 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053915671
VERSION     XP_053915671.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059696.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..334
                     /product="protein arginine N-methyltransferase 8 isoform
                     X3"
                     /calculated_mol_wt=38706
     Region          26..>199
                     /region_name="COG4076"
                     /note="Predicted RNA methylase [General function
                     prediction only]"
                     /db_xref="CDD:443253"
     CDS             1..334
                     /gene="PRMT8"
                     /coded_by="XM_054059696.1:1106..2110"
                     /db_xref="GeneID:104068407"
ORIGIN      
        1 maklinpeem tsrdyyfdsy ahfgiheeml kdevrtltyr nsmyhnkhvf kdkivldvgs
       61 gtgilsmfaa kagakkvygi ecssisdyse kiikanhlds iitifkgkve evelpvdkvd
      121 iiisewmgyc lfyesmlntv ifardkwlkp gglmfpdraa lyvvaiedrq ykdfkihwwe
      181 nvygfdmtci rdvamkeplv divdpkqvvt naclikevdi ytvkteelaf tsafclqiqr
      241 ndyihalvty fnieftkchk kmgfstapda pythwkqtvf yledyltvrr geeiygtism
      301 kpnaknvrdl dftvdldfkg qlcemsvsnd ykmr
//
LOCUS       XP_053915675             334 aa            linear   VRT 09-MAR-2023
DEFINITION  protein arginine N-methyltransferase 8 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053915675
VERSION     XP_053915675.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059700.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..334
                     /product="protein arginine N-methyltransferase 8 isoform
                     X3"
                     /calculated_mol_wt=38706
     Region          26..>199
                     /region_name="COG4076"
                     /note="Predicted RNA methylase [General function
                     prediction only]"
                     /db_xref="CDD:443253"
     CDS             1..334
                     /gene="PRMT8"
                     /coded_by="XM_054059700.1:287..1291"
                     /db_xref="GeneID:104068407"
ORIGIN      
        1 maklinpeem tsrdyyfdsy ahfgiheeml kdevrtltyr nsmyhnkhvf kdkivldvgs
       61 gtgilsmfaa kagakkvygi ecssisdyse kiikanhlds iitifkgkve evelpvdkvd
      121 iiisewmgyc lfyesmlntv ifardkwlkp gglmfpdraa lyvvaiedrq ykdfkihwwe
      181 nvygfdmtci rdvamkeplv divdpkqvvt naclikevdi ytvkteelaf tsafclqiqr
      241 ndyihalvty fnieftkchk kmgfstapda pythwkqtvf yledyltvrr geeiygtism
      301 kpnaknvrdl dftvdldfkg qlcemsvsnd ykmr
//
LOCUS       XP_053915705             639 aa            linear   VRT 09-MAR-2023
DEFINITION  myotubularin-related protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053915705
VERSION     XP_053915705.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059730.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..639
                     /product="myotubularin-related protein 2 isoform X1"
                     /calculated_mol_wt=72729
     Region          69..183
                     /region_name="PH-GRAM_MTMR2_mammal-like"
                     /note="Myotubularian related 2 protein (MTMR2) Pleckstrin
                     Homology-Glucosyltransferases, Rab-like GTPase activators
                     and Myotubularins (PH-GRAM) domain; cd13356"
                     /db_xref="CDD:270163"
     Region          198..525
                     /region_name="Myotub-related"
                     /note="Myotubularin-like phosphatase domain; pfam06602"
                     /db_xref="CDD:461958"
     CDS             1..639
                     /gene="MTMR2"
                     /coded_by="XM_054059730.1:34..1953"
                     /db_xref="GeneID:104064082"
ORIGIN      
        1 meessscesl gagraasrds lssastshsd hsaptksasa vssdsvstsv dnfspdlrvl
       61 retnklaeme eppllpgeti kdmakdvtyi cpftgairgt ltvtnyrlyf ksmerdppfv
      121 ldaslgvinr vekiggassr gensygleiv ckdirnlrfa hkpegrtrrs ifenlmkyaf
      181 pvsnnlplfa feykevfpen gwkvydptwe yrrqgipnes wrltkinery elcdtypail
      241 avpvnipdee lkrvasfrsr gripvlswih pesqatitrc sqpmvgvsgk rskedekylq
      301 avmdsnaqsh kififdarps vnavankakg ggyesedayq naelvfldih nihvmreslr
      361 klkeivypni eethwlsnle sthwlehikl ilagalriad kvesgktsvv vhcsdgwdrt
      421 aqltslsllm ldgyyrtirg fevlvekewl sfghrfqlrv ghgdknhada drspvflqfi
      481 dcvwqmtrqf ptafefneyf litildhlys clfgtflcss eqqrvkeglp kktvslwsyi
      541 nsqledftnp lyvsysnhvl ypvasmrhle lwvgyyirwn prmkpqepvh srykellakr
      601 aelqkkveel qreitnrsts sseragspaq cvapvqtvv
//
LOCUS       XP_053915710             571 aa            linear   VRT 09-MAR-2023
DEFINITION  myotubularin-related protein 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053915710
VERSION     XP_053915710.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059735.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..571
                     /product="myotubularin-related protein 2 isoform X2"
                     /calculated_mol_wt=65757
     Region          1..115
                     /region_name="PH-GRAM_MTMR2_mammal-like"
                     /note="Myotubularian related 2 protein (MTMR2) Pleckstrin
                     Homology-Glucosyltransferases, Rab-like GTPase activators
                     and Myotubularins (PH-GRAM) domain; cd13356"
                     /db_xref="CDD:270163"
     Region          130..457
                     /region_name="Myotub-related"
                     /note="Myotubularin-like phosphatase domain; pfam06602"
                     /db_xref="CDD:461958"
     CDS             1..571
                     /gene="MTMR2"
                     /coded_by="XM_054059735.1:293..2008"
                     /db_xref="GeneID:104064082"
ORIGIN      
        1 meeppllpge tikdmakdvt yicpftgair gtltvtnyrl yfksmerdpp fvldaslgvi
       61 nrvekiggas srgensygle ivckdirnlr fahkpegrtr rsifenlmky afpvsnnlpl
      121 fafeykevfp engwkvydpt weyrrqgipn eswrltkine ryelcdtypa ilavpvnipd
      181 eelkrvasfr srgripvlsw ihpesqatit rcsqpmvgvs gkrskedeky lqavmdsnaq
      241 shkififdar psvnavanka kgggyeseda yqnaelvfld ihnihvmres lrklkeivyp
      301 nieethwlsn lesthwlehi klilagalri adkvesgkts vvvhcsdgwd rtaqltslsl
      361 lmldgyyrti rgfevlveke wlsfghrfql rvghgdknha dadrspvflq fidcvwqmtr
      421 qfptafefne yflitildhl ysclfgtflc sseqqrvkeg lpkktvslws yinsqledft
      481 nplyvsysnh vlypvasmrh lelwvgyyir wnprmkpqep vhsrykella kraelqkkve
      541 elqreitnrs tssseragsp aqcvapvqtv v
//
LOCUS       XP_053915720             571 aa            linear   VRT 09-MAR-2023
DEFINITION  myotubularin-related protein 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053915720
VERSION     XP_053915720.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059745.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..571
                     /product="myotubularin-related protein 2 isoform X2"
                     /calculated_mol_wt=65757
     Region          1..115
                     /region_name="PH-GRAM_MTMR2_mammal-like"
                     /note="Myotubularian related 2 protein (MTMR2) Pleckstrin
                     Homology-Glucosyltransferases, Rab-like GTPase activators
                     and Myotubularins (PH-GRAM) domain; cd13356"
                     /db_xref="CDD:270163"
     Region          130..457
                     /region_name="Myotub-related"
                     /note="Myotubularin-like phosphatase domain; pfam06602"
                     /db_xref="CDD:461958"
     CDS             1..571
                     /gene="MTMR2"
                     /coded_by="XM_054059745.1:391..2106"
                     /db_xref="GeneID:104064082"
ORIGIN      
        1 meeppllpge tikdmakdvt yicpftgair gtltvtnyrl yfksmerdpp fvldaslgvi
       61 nrvekiggas srgensygle ivckdirnlr fahkpegrtr rsifenlmky afpvsnnlpl
      121 fafeykevfp engwkvydpt weyrrqgipn eswrltkine ryelcdtypa ilavpvnipd
      181 eelkrvasfr srgripvlsw ihpesqatit rcsqpmvgvs gkrskedeky lqavmdsnaq
      241 shkififdar psvnavanka kgggyeseda yqnaelvfld ihnihvmres lrklkeivyp
      301 nieethwlsn lesthwlehi klilagalri adkvesgkts vvvhcsdgwd rtaqltslsl
      361 lmldgyyrti rgfevlveke wlsfghrfql rvghgdknha dadrspvflq fidcvwqmtr
      421 qfptafefne yflitildhl ysclfgtflc sseqqrvkeg lpkktvslws yinsqledft
      481 nplyvsysnh vlypvasmrh lelwvgyyir wnprmkpqep vhsrykella kraelqkkve
      541 elqreitnrs tssseragsp aqcvapvqtv v
//
LOCUS       XP_053915726             571 aa            linear   VRT 09-MAR-2023
DEFINITION  myotubularin-related protein 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053915726
VERSION     XP_053915726.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059751.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..571
                     /product="myotubularin-related protein 2 isoform X2"
                     /calculated_mol_wt=65757
     Region          1..115
                     /region_name="PH-GRAM_MTMR2_mammal-like"
                     /note="Myotubularian related 2 protein (MTMR2) Pleckstrin
                     Homology-Glucosyltransferases, Rab-like GTPase activators
                     and Myotubularins (PH-GRAM) domain; cd13356"
                     /db_xref="CDD:270163"
     Region          130..457
                     /region_name="Myotub-related"
                     /note="Myotubularin-like phosphatase domain; pfam06602"
                     /db_xref="CDD:461958"
     CDS             1..571
                     /gene="MTMR2"
                     /coded_by="XM_054059751.1:96..1811"
                     /db_xref="GeneID:104064082"
ORIGIN      
        1 meeppllpge tikdmakdvt yicpftgair gtltvtnyrl yfksmerdpp fvldaslgvi
       61 nrvekiggas srgensygle ivckdirnlr fahkpegrtr rsifenlmky afpvsnnlpl
      121 fafeykevfp engwkvydpt weyrrqgipn eswrltkine ryelcdtypa ilavpvnipd
      181 eelkrvasfr srgripvlsw ihpesqatit rcsqpmvgvs gkrskedeky lqavmdsnaq
      241 shkififdar psvnavanka kgggyeseda yqnaelvfld ihnihvmres lrklkeivyp
      301 nieethwlsn lesthwlehi klilagalri adkvesgkts vvvhcsdgwd rtaqltslsl
      361 lmldgyyrti rgfevlveke wlsfghrfql rvghgdknha dadrspvflq fidcvwqmtr
      421 qfptafefne yflitildhl ysclfgtflc sseqqrvkeg lpkktvslws yinsqledft
      481 nplyvsysnh vlypvasmrh lelwvgyyir wnprmkpqep vhsrykella kraelqkkve
      541 elqreitnrs tssseragsp aqcvapvqtv v
//
LOCUS       XP_053915734             571 aa            linear   VRT 09-MAR-2023
DEFINITION  myotubularin-related protein 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053915734
VERSION     XP_053915734.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059759.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..571
                     /product="myotubularin-related protein 2 isoform X2"
                     /calculated_mol_wt=65757
     Region          1..115
                     /region_name="PH-GRAM_MTMR2_mammal-like"
                     /note="Myotubularian related 2 protein (MTMR2) Pleckstrin
                     Homology-Glucosyltransferases, Rab-like GTPase activators
                     and Myotubularins (PH-GRAM) domain; cd13356"
                     /db_xref="CDD:270163"
     Region          130..457
                     /region_name="Myotub-related"
                     /note="Myotubularin-like phosphatase domain; pfam06602"
                     /db_xref="CDD:461958"
     CDS             1..571
                     /gene="MTMR2"
                     /coded_by="XM_054059759.1:265..1980"
                     /db_xref="GeneID:104064082"
ORIGIN      
        1 meeppllpge tikdmakdvt yicpftgair gtltvtnyrl yfksmerdpp fvldaslgvi
       61 nrvekiggas srgensygle ivckdirnlr fahkpegrtr rsifenlmky afpvsnnlpl
      121 fafeykevfp engwkvydpt weyrrqgipn eswrltkine ryelcdtypa ilavpvnipd
      181 eelkrvasfr srgripvlsw ihpesqatit rcsqpmvgvs gkrskedeky lqavmdsnaq
      241 shkififdar psvnavanka kgggyeseda yqnaelvfld ihnihvmres lrklkeivyp
      301 nieethwlsn lesthwlehi klilagalri adkvesgkts vvvhcsdgwd rtaqltslsl
      361 lmldgyyrti rgfevlveke wlsfghrfql rvghgdknha dadrspvflq fidcvwqmtr
      421 qfptafefne yflitildhl ysclfgtflc sseqqrvkeg lpkktvslws yinsqledft
      481 nplyvsysnh vlypvasmrh lelwvgyyir wnprmkpqep vhsrykella kraelqkkve
      541 elqreitnrs tssseragsp aqcvapvqtv v
//
LOCUS       XP_053915742             571 aa            linear   VRT 09-MAR-2023
DEFINITION  myotubularin-related protein 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053915742
VERSION     XP_053915742.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059767.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..571
                     /product="myotubularin-related protein 2 isoform X2"
                     /calculated_mol_wt=65757
     Region          1..115
                     /region_name="PH-GRAM_MTMR2_mammal-like"
                     /note="Myotubularian related 2 protein (MTMR2) Pleckstrin
                     Homology-Glucosyltransferases, Rab-like GTPase activators
                     and Myotubularins (PH-GRAM) domain; cd13356"
                     /db_xref="CDD:270163"
     Region          130..457
                     /region_name="Myotub-related"
                     /note="Myotubularin-like phosphatase domain; pfam06602"
                     /db_xref="CDD:461958"
     CDS             1..571
                     /gene="MTMR2"
                     /coded_by="XM_054059767.1:173..1888"
                     /db_xref="GeneID:104064082"
ORIGIN      
        1 meeppllpge tikdmakdvt yicpftgair gtltvtnyrl yfksmerdpp fvldaslgvi
       61 nrvekiggas srgensygle ivckdirnlr fahkpegrtr rsifenlmky afpvsnnlpl
      121 fafeykevfp engwkvydpt weyrrqgipn eswrltkine ryelcdtypa ilavpvnipd
      181 eelkrvasfr srgripvlsw ihpesqatit rcsqpmvgvs gkrskedeky lqavmdsnaq
      241 shkififdar psvnavanka kgggyeseda yqnaelvfld ihnihvmres lrklkeivyp
      301 nieethwlsn lesthwlehi klilagalri adkvesgkts vvvhcsdgwd rtaqltslsl
      361 lmldgyyrti rgfevlveke wlsfghrfql rvghgdknha dadrspvflq fidcvwqmtr
      421 qfptafefne yflitildhl ysclfgtflc sseqqrvkeg lpkktvslws yinsqledft
      481 nplyvsysnh vlypvasmrh lelwvgyyir wnprmkpqep vhsrykella kraelqkkve
      541 elqreitnrs tssseragsp aqcvapvqtv v
//
LOCUS       XP_009564780             495 aa            linear   VRT 09-MAR-2023
DEFINITION  centrosomal protein of 57 kDa [Cuculus canorus].
ACCESSION   XP_009564780
VERSION     XP_009564780.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566485.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..495
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..495
                     /product="centrosomal protein of 57 kDa"
                     /calculated_mol_wt=56242
     Region          63..240
                     /region_name="Cep57_CLD"
                     /note="Centrosome localization domain of Cep57; pfam14073"
                     /db_xref="CDD:464080"
     Region          356..414
                     /region_name="Cep57_MT_bd"
                     /note="Centrosome microtubule-binding domain of Cep57;
                     pfam06657"
                     /db_xref="CDD:461976"
     CDS             1..495
                     /gene="CEP57"
                     /coded_by="XM_009566485.2:86..1573"
                     /db_xref="GeneID:104064180"
ORIGIN      
        1 maaaggderm adlhktlnst satdgisats fieypkhkpf insdllrspw kpvipypesn
       61 srailsalrn lqekihrlel erlkaeenvk hlsretadyk kvlseqmqhk ehdkteaskk
      121 nqelasqlaa aesrcsllek qldymrrmiq haenekshll ekqgslekdr lldeshvqsk
      181 lekldmleke ysrltamqsi aekkmkelee klqeeehark lvqekaaelq tgletnrlli
      241 qaaspllspk arkprkkakq pekkrshptt qphyrlclgd vpfvagksts pshsvganvq
      301 hvlhlmkqht kalcnsrvvn dtplaksist ghpasksrks slpkessssq eelsevlltl
      361 qdefgqmsfd hqqlsklvqe aptvavredl erelealvek meakadqisk vrrhrlqler
      421 lkrecksrkt sakqikdsrf pvsevkvttt vttkgknvgp ikvrpgeksr knlqllrdmq
      481 tiqtslqkdd iswdy
//
LOCUS       XP_053915763            1852 aa            linear   VRT 09-MAR-2023
DEFINITION  centrosomal protein of 295 kDa [Cuculus canorus].
ACCESSION   XP_053915763
VERSION     XP_053915763.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059788.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1852
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1852
                     /product="centrosomal protein of 295 kDa"
                     /calculated_mol_wt=211624
     Region          <2..522
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          1711..1847
                     /region_name="ALMS_motif"
                     /note="ALMS motif; pfam15309"
                     /db_xref="CDD:464634"
     CDS             1..1852
                     /gene="CEP295"
                     /coded_by="XM_054059788.1:716..6274"
                     /db_xref="GeneID:104064192"
ORIGIN      
        1 mkrkaakagk lrlspneetm lmkeeyerrr klrlqqvreq qkdialqirq kvkqrreeql
       61 rkleealrae wqkaqdekmk aleklylssl raigeghrqa kehepdleal akqaeerkqr
      121 aekrhrkamk dqkhqrekll reqarranar khalevekqr aakiaslppp pphplenfev
      181 kktpavkpys adnfsvtryh isepfvdrev dgeqpdarva aeeegnrlee lhreaerqrr
      241 eqlekahlrg tyalkkvhla qdrerllkel eqmqnmdrmr rrqivaqmpp qifvpsckrm
      301 eikkewqrel efafedmyce dmkmeedmil qfqpqplpap cdryqdndld isleqesacd
      361 sqpepacdtr qesgqmieev pnelenheea kprqpqpkia lkkllnkirs qkeewtskse
      421 ketqneieti esgtiasker plydlepnhe qqkitmceak dseeilentv aaensvlihp
      481 qeqaakirme kerqkwneqi eqqkqeqlal lkqieearar leadflviqm ktcleeakkk
      541 keeeerrqlv qshsvpstdq qnkvehetgn tpvsetkspt edrhlqmirn yqqrllqqnr
      601 lhkqtieear rhlqeyqnkl kqrylsstat llssvetksv nlrpvsepll qgqglqptqh
      661 qspqqvraqe yarslpvfsg tlpssqkyed qthnispgrh vqfvetsklk hgefnlpccr
      721 hsqeqvgtle tcnnhvreps rfqlpselvm kdvtavrtql eaciqhvkyl lpaedsseps
      781 etvrsessqk isnhqakrep plkaplmpaa kgspvvqaas adssacwqgs aessfkksle
      841 qplsladsvt lsreeskakd veellipkpg sasllnyagi lnlrdsvlas sesiqaqqky
      901 lkelqeqida qreallarqk iqeqlllqkq eklkeqqeal keflnkqvkh ictnedmtea
      961 qkpdwmnrtd ffqvsenyqq edfgrsdfhr sdmisqyiss ieqseqsekv lcreqkwrss
     1021 kppvakvklg ldleqhelsv ipevdtpksc smsfaekrds vggesspist avefacvdgy
     1081 shalheedrl plsitkyeeq iangsprqsk qssrllqevl mmtaensyds alsqdsqvaq
     1141 dspglaakig egvtvrsgps vrltntevls evvstnlgse afvrgipcdl sstissgsfl
     1201 tsetldaspa gtglssdste dgawretasr pwnsllplqq rranlsgvse trlpeegmhl
     1261 ykesqiwqis rkctghlnsy sednthfqal aaeldfpkte tpflnfnrqp fqplepsldf
     1321 dtssssssqy risqdrefsk tskvstkspd kavflevgns slnrqrngll saletnrlni
     1381 taasesiken ispgseesfh plqlesalsh ysqnadqpea pnamlqrpfe qtsgskkwgs
     1441 encvssarey eelarsmdhi slqcsiedlq nesltppekq ksfyqlnttl vpldetlpqr
     1501 llketlssek lpgeafdkky vklsensvhv headkaveld sqyntnkkep dqdfpeaqkl
     1561 lgvpretnse hsdihlqivv qqngsslerh ekprsscrip vwetesgcgi meepeltlvs
     1621 lndisiaeld tehanhekik edkinnptsa drsefnafte ereflplapd vddltslrpd
     1681 sysvaqspsd nhlpshqpav mllefaatpg slqesflkrk knfiqkslkr veeiktkere
     1741 nekpearqlq rgkseklsrq kesllvsgkk gtvakqlkkv gevkvssped rkagetemrq
     1801 rtsrlynqlt evkmgkeeka rqetyaknre kakefqkkml eklrakktrk ap
//
LOCUS       XP_053915769            1852 aa            linear   VRT 09-MAR-2023
DEFINITION  centrosomal protein of 295 kDa [Cuculus canorus].
ACCESSION   XP_053915769
VERSION     XP_053915769.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059794.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1852
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1852
                     /product="centrosomal protein of 295 kDa"
                     /calculated_mol_wt=211624
     Region          <2..522
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          1711..1847
                     /region_name="ALMS_motif"
                     /note="ALMS motif; pfam15309"
                     /db_xref="CDD:464634"
     CDS             1..1852
                     /gene="CEP295"
                     /coded_by="XM_054059794.1:61..5619"
                     /db_xref="GeneID:104064192"
ORIGIN      
        1 mkrkaakagk lrlspneetm lmkeeyerrr klrlqqvreq qkdialqirq kvkqrreeql
       61 rkleealrae wqkaqdekmk aleklylssl raigeghrqa kehepdleal akqaeerkqr
      121 aekrhrkamk dqkhqrekll reqarranar khalevekqr aakiaslppp pphplenfev
      181 kktpavkpys adnfsvtryh isepfvdrev dgeqpdarva aeeegnrlee lhreaerqrr
      241 eqlekahlrg tyalkkvhla qdrerllkel eqmqnmdrmr rrqivaqmpp qifvpsckrm
      301 eikkewqrel efafedmyce dmkmeedmil qfqpqplpap cdryqdndld isleqesacd
      361 sqpepacdtr qesgqmieev pnelenheea kprqpqpkia lkkllnkirs qkeewtskse
      421 ketqneieti esgtiasker plydlepnhe qqkitmceak dseeilentv aaensvlihp
      481 qeqaakirme kerqkwneqi eqqkqeqlal lkqieearar leadflviqm ktcleeakkk
      541 keeeerrqlv qshsvpstdq qnkvehetgn tpvsetkspt edrhlqmirn yqqrllqqnr
      601 lhkqtieear rhlqeyqnkl kqrylsstat llssvetksv nlrpvsepll qgqglqptqh
      661 qspqqvraqe yarslpvfsg tlpssqkyed qthnispgrh vqfvetsklk hgefnlpccr
      721 hsqeqvgtle tcnnhvreps rfqlpselvm kdvtavrtql eaciqhvkyl lpaedsseps
      781 etvrsessqk isnhqakrep plkaplmpaa kgspvvqaas adssacwqgs aessfkksle
      841 qplsladsvt lsreeskakd veellipkpg sasllnyagi lnlrdsvlas sesiqaqqky
      901 lkelqeqida qreallarqk iqeqlllqkq eklkeqqeal keflnkqvkh ictnedmtea
      961 qkpdwmnrtd ffqvsenyqq edfgrsdfhr sdmisqyiss ieqseqsekv lcreqkwrss
     1021 kppvakvklg ldleqhelsv ipevdtpksc smsfaekrds vggesspist avefacvdgy
     1081 shalheedrl plsitkyeeq iangsprqsk qssrllqevl mmtaensyds alsqdsqvaq
     1141 dspglaakig egvtvrsgps vrltntevls evvstnlgse afvrgipcdl sstissgsfl
     1201 tsetldaspa gtglssdste dgawretasr pwnsllplqq rranlsgvse trlpeegmhl
     1261 ykesqiwqis rkctghlnsy sednthfqal aaeldfpkte tpflnfnrqp fqplepsldf
     1321 dtssssssqy risqdrefsk tskvstkspd kavflevgns slnrqrngll saletnrlni
     1381 taasesiken ispgseesfh plqlesalsh ysqnadqpea pnamlqrpfe qtsgskkwgs
     1441 encvssarey eelarsmdhi slqcsiedlq nesltppekq ksfyqlnttl vpldetlpqr
     1501 llketlssek lpgeafdkky vklsensvhv headkaveld sqyntnkkep dqdfpeaqkl
     1561 lgvpretnse hsdihlqivv qqngsslerh ekprsscrip vwetesgcgi meepeltlvs
     1621 lndisiaeld tehanhekik edkinnptsa drsefnafte ereflplapd vddltslrpd
     1681 sysvaqspsd nhlpshqpav mllefaatpg slqesflkrk knfiqkslkr veeiktkere
     1741 nekpearqlq rgkseklsrq kesllvsgkk gtvakqlkkv gevkvssped rkagetemrq
     1801 rtsrlynqlt evkmgkeeka rqetyaknre kakefqkkml eklrakktrk ap
//
LOCUS       XP_053915777             362 aa            linear   VRT 09-MAR-2023
DEFINITION  TATA box-binding protein-associated factor RNA polymerase I subunit
            D [Cuculus canorus].
ACCESSION   XP_053915777
VERSION     XP_053915777.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059802.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..362
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..362
                     /product="TATA box-binding protein-associated factor RNA
                     polymerase I subunit D"
                     /calculated_mol_wt=40960
     Region          93..337
                     /region_name="TAF1D"
                     /note="TATA box-binding protein-associated factor 1D;
                     pfam15333"
                     /db_xref="CDD:464653"
     CDS             1..362
                     /gene="TAF1D"
                     /coded_by="XM_054059802.1:165..1253"
                     /db_xref="GeneID:104064191"
ORIGIN      
        1 mtdtnesqas gsdyldaqel icnsqkktyk vhshernkqm kcsrsrqena speessddln
       61 sicgsdasav vlldssdsei dlsatsgsen hpksstapsk qlrsqsskqq aesvlgvlgd
      121 dessdssrsp prpvkasetl ekpkskfnlk aifayhfrgk kfkaaahrkf rsssrkrkrr
      181 kkdesaqmpp cestrmplpq rrlpptaspe eqkrrlqhrg vqfpfvekhy gkkhipfrmv
      241 lgyeqaaikg ylqyvemlky eehlkkalkt lqanedlere clavrkhkyl ddegpispiq
      301 eindddddsl nfdkpedlda rvvenssfii ssripskkks kperkrvksv ktievededa
      361 cc
//
LOCUS       XP_053915787             362 aa            linear   VRT 09-MAR-2023
DEFINITION  TATA box-binding protein-associated factor RNA polymerase I subunit
            D [Cuculus canorus].
ACCESSION   XP_053915787
VERSION     XP_053915787.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059812.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..362
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..362
                     /product="TATA box-binding protein-associated factor RNA
                     polymerase I subunit D"
                     /calculated_mol_wt=40960
     Region          93..337
                     /region_name="TAF1D"
                     /note="TATA box-binding protein-associated factor 1D;
                     pfam15333"
                     /db_xref="CDD:464653"
     CDS             1..362
                     /gene="TAF1D"
                     /coded_by="XM_054059812.1:165..1253"
                     /db_xref="GeneID:104064191"
ORIGIN      
        1 mtdtnesqas gsdyldaqel icnsqkktyk vhshernkqm kcsrsrqena speessddln
       61 sicgsdasav vlldssdsei dlsatsgsen hpksstapsk qlrsqsskqq aesvlgvlgd
      121 dessdssrsp prpvkasetl ekpkskfnlk aifayhfrgk kfkaaahrkf rsssrkrkrr
      181 kkdesaqmpp cestrmplpq rrlpptaspe eqkrrlqhrg vqfpfvekhy gkkhipfrmv
      241 lgyeqaaikg ylqyvemlky eehlkkalkt lqanedlere clavrkhkyl ddegpispiq
      301 eindddddsl nfdkpedlda rvvenssfii ssripskkks kperkrvksv ktievededa
      361 cc
//
LOCUS       XP_009564791             362 aa            linear   VRT 09-MAR-2023
DEFINITION  TATA box-binding protein-associated factor RNA polymerase I subunit
            D [Cuculus canorus].
ACCESSION   XP_009564791
VERSION     XP_009564791.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566496.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564791.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..362
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..362
                     /product="TATA box-binding protein-associated factor RNA
                     polymerase I subunit D"
                     /calculated_mol_wt=40960
     Region          93..337
                     /region_name="TAF1D"
                     /note="TATA box-binding protein-associated factor 1D;
                     pfam15333"
                     /db_xref="CDD:464653"
     CDS             1..362
                     /gene="TAF1D"
                     /coded_by="XM_009566496.2:165..1253"
                     /db_xref="GeneID:104064191"
ORIGIN      
        1 mtdtnesqas gsdyldaqel icnsqkktyk vhshernkqm kcsrsrqena speessddln
       61 sicgsdasav vlldssdsei dlsatsgsen hpksstapsk qlrsqsskqq aesvlgvlgd
      121 dessdssrsp prpvkasetl ekpkskfnlk aifayhfrgk kfkaaahrkf rsssrkrkrr
      181 kkdesaqmpp cestrmplpq rrlpptaspe eqkrrlqhrg vqfpfvekhy gkkhipfrmv
      241 lgyeqaaikg ylqyvemlky eehlkkalkt lqanedlere clavrkhkyl ddegpispiq
      301 eindddddsl nfdkpedlda rvvenssfii ssripskkks kperkrvksv ktievededa
      361 cc
//
LOCUS       XP_053915802             362 aa            linear   VRT 09-MAR-2023
DEFINITION  TATA box-binding protein-associated factor RNA polymerase I subunit
            D [Cuculus canorus].
ACCESSION   XP_053915802
VERSION     XP_053915802.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059827.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..362
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..362
                     /product="TATA box-binding protein-associated factor RNA
                     polymerase I subunit D"
                     /calculated_mol_wt=40960
     Region          93..337
                     /region_name="TAF1D"
                     /note="TATA box-binding protein-associated factor 1D;
                     pfam15333"
                     /db_xref="CDD:464653"
     CDS             1..362
                     /gene="TAF1D"
                     /coded_by="XM_054059827.1:165..1253"
                     /db_xref="GeneID:104064191"
ORIGIN      
        1 mtdtnesqas gsdyldaqel icnsqkktyk vhshernkqm kcsrsrqena speessddln
       61 sicgsdasav vlldssdsei dlsatsgsen hpksstapsk qlrsqsskqq aesvlgvlgd
      121 dessdssrsp prpvkasetl ekpkskfnlk aifayhfrgk kfkaaahrkf rsssrkrkrr
      181 kkdesaqmpp cestrmplpq rrlpptaspe eqkrrlqhrg vqfpfvekhy gkkhipfrmv
      241 lgyeqaaikg ylqyvemlky eehlkkalkt lqanedlere clavrkhkyl ddegpispiq
      301 eindddddsl nfdkpedlda rvvenssfii ssripskkks kperkrvksv ktievededa
      361 cc
//
LOCUS       XP_053915809             362 aa            linear   VRT 09-MAR-2023
DEFINITION  TATA box-binding protein-associated factor RNA polymerase I subunit
            D [Cuculus canorus].
ACCESSION   XP_053915809
VERSION     XP_053915809.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059834.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..362
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..362
                     /product="TATA box-binding protein-associated factor RNA
                     polymerase I subunit D"
                     /calculated_mol_wt=40960
     Region          93..337
                     /region_name="TAF1D"
                     /note="TATA box-binding protein-associated factor 1D;
                     pfam15333"
                     /db_xref="CDD:464653"
     CDS             1..362
                     /gene="TAF1D"
                     /coded_by="XM_054059834.1:165..1253"
                     /db_xref="GeneID:104064191"
ORIGIN      
        1 mtdtnesqas gsdyldaqel icnsqkktyk vhshernkqm kcsrsrqena speessddln
       61 sicgsdasav vlldssdsei dlsatsgsen hpksstapsk qlrsqsskqq aesvlgvlgd
      121 dessdssrsp prpvkasetl ekpkskfnlk aifayhfrgk kfkaaahrkf rsssrkrkrr
      181 kkdesaqmpp cestrmplpq rrlpptaspe eqkrrlqhrg vqfpfvekhy gkkhipfrmv
      241 lgyeqaaikg ylqyvemlky eehlkkalkt lqanedlere clavrkhkyl ddegpispiq
      301 eindddddsl nfdkpedlda rvvenssfii ssripskkks kperkrvksv ktievededa
      361 cc
//
LOCUS       XP_053915815             362 aa            linear   VRT 09-MAR-2023
DEFINITION  TATA box-binding protein-associated factor RNA polymerase I subunit
            D [Cuculus canorus].
ACCESSION   XP_053915815
VERSION     XP_053915815.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059840.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..362
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..362
                     /product="TATA box-binding protein-associated factor RNA
                     polymerase I subunit D"
                     /calculated_mol_wt=40960
     Region          93..337
                     /region_name="TAF1D"
                     /note="TATA box-binding protein-associated factor 1D;
                     pfam15333"
                     /db_xref="CDD:464653"
     CDS             1..362
                     /gene="TAF1D"
                     /coded_by="XM_054059840.1:165..1253"
                     /db_xref="GeneID:104064191"
ORIGIN      
        1 mtdtnesqas gsdyldaqel icnsqkktyk vhshernkqm kcsrsrqena speessddln
       61 sicgsdasav vlldssdsei dlsatsgsen hpksstapsk qlrsqsskqq aesvlgvlgd
      121 dessdssrsp prpvkasetl ekpkskfnlk aifayhfrgk kfkaaahrkf rsssrkrkrr
      181 kkdesaqmpp cestrmplpq rrlpptaspe eqkrrlqhrg vqfpfvekhy gkkhipfrmv
      241 lgyeqaaikg ylqyvemlky eehlkkalkt lqanedlere clavrkhkyl ddegpispiq
      301 eindddddsl nfdkpedlda rvvenssfii ssripskkks kperkrvksv ktievededa
      361 cc
//
LOCUS       XP_053915825             362 aa            linear   VRT 09-MAR-2023
DEFINITION  TATA box-binding protein-associated factor RNA polymerase I subunit
            D [Cuculus canorus].
ACCESSION   XP_053915825
VERSION     XP_053915825.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059850.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..362
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..362
                     /product="TATA box-binding protein-associated factor RNA
                     polymerase I subunit D"
                     /calculated_mol_wt=40960
     Region          93..337
                     /region_name="TAF1D"
                     /note="TATA box-binding protein-associated factor 1D;
                     pfam15333"
                     /db_xref="CDD:464653"
     CDS             1..362
                     /gene="TAF1D"
                     /coded_by="XM_054059850.1:165..1253"
                     /db_xref="GeneID:104064191"
ORIGIN      
        1 mtdtnesqas gsdyldaqel icnsqkktyk vhshernkqm kcsrsrqena speessddln
       61 sicgsdasav vlldssdsei dlsatsgsen hpksstapsk qlrsqsskqq aesvlgvlgd
      121 dessdssrsp prpvkasetl ekpkskfnlk aifayhfrgk kfkaaahrkf rsssrkrkrr
      181 kkdesaqmpp cestrmplpq rrlpptaspe eqkrrlqhrg vqfpfvekhy gkkhipfrmv
      241 lgyeqaaikg ylqyvemlky eehlkkalkt lqanedlere clavrkhkyl ddegpispiq
      301 eindddddsl nfdkpedlda rvvenssfii ssripskkks kperkrvksv ktievededa
      361 cc
//
LOCUS       XP_053915838             398 aa            linear   VRT 09-MAR-2023
DEFINITION  nucleoside diphosphate kinase 7 isoform X1 [Cuculus canorus].
ACCESSION   XP_053915838
VERSION     XP_053915838.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059863.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..398
                     /product="nucleoside diphosphate kinase 7 isoform X1"
                     /calculated_mol_wt=44352
     Region          28..113
                     /region_name="DM10_dom"
                     /note="DM10 domain; cl26962"
                     /db_xref="CDD:474875"
     Region          114..244
                     /region_name="NDPk7A"
                     /note="Nucleoside diphosphate kinase 7 domain A (NDPk7A):
                     The nm23-H7 class of nucleoside diphosphate kinase (NDPk7)
                     consists of an N-terminal DM10 domain and two functional
                     catalytic NDPk modules, NDPk7A and NDPk7B. The function of
                     the DM10 domain, which also...; cd04415"
                     /db_xref="CDD:239878"
     Site            order(121,159,167,195,201,215,225,228,230..231,239)
                     /site_type="active"
                     /db_xref="CDD:239878"
     Site            order(125,128..130,133,136,145..147)
                     /site_type="other"
                     /note="multimer interface [polypeptide binding]"
                     /db_xref="CDD:239878"
     Region          260..393
                     /region_name="NDPk7B"
                     /note="Nucleoside diphosphate kinase 7 domain B (NDPk7B):
                     The nm23-H7 class of nucleoside diphosphate kinase (NDPk7)
                     consists of an N-terminal DM10 domain and two functional
                     catalytic NDPk modules, NDPk7A and NDPk7B. The function of
                     the DM10 domain, which also...; cd04412"
                     /db_xref="CDD:239875"
     Site            order(267,307,316,344,350,364,374,377,379..380,388)
                     /site_type="active"
                     /db_xref="CDD:239875"
     Site            order(271,276..278,281,284,293..295)
                     /site_type="other"
                     /note="multimer interface [polypeptide binding]"
                     /db_xref="CDD:239875"
     CDS             1..398
                     /gene="NME7"
                     /coded_by="XM_054059863.1:32..1228"
                     /db_xref="GeneID:104055839"
ORIGIN      
        1 mvsagtgaga eppppppppa tlvsqddrya ftaewydpha slfrrfeily ypkdgsvemy
       61 daknrrlflk rtkyeglhle dlfvgnkitv fsrhlslvdy gdqytarklg shrertlali
      121 kpdampqmge lidniinegf titkakmmll srkeaadfyr dhqtkpfyne liqfitsgpi
      181 vameilghda vckwktllgp snsaaaqtda pdsirakfgh dgirnaahgp dsvasaaqel
      241 elffpssggr gpvnsskltn ctcciikpha vyeglagkii kaiinegfqi salqmfnmer
      301 anveefyevy kgvtddytdm vtelcsgpci ameiiqpecq kvfrdfcgps dpeiarhlrp
      361 rtlralfgkn kvqnavhctd lpedgplevq yffkildn
//
LOCUS       XP_053915843             376 aa            linear   VRT 09-MAR-2023
DEFINITION  nucleoside diphosphate kinase 7 isoform X2 [Cuculus canorus].
ACCESSION   XP_053915843
VERSION     XP_053915843.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059868.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..376
                     /product="nucleoside diphosphate kinase 7 isoform X2"
                     /calculated_mol_wt=42390
     Region          6..91
                     /region_name="DM10_dom"
                     /note="DM10 domain; cl26962"
                     /db_xref="CDD:474875"
     Region          92..222
                     /region_name="NDPk7A"
                     /note="Nucleoside diphosphate kinase 7 domain A (NDPk7A):
                     The nm23-H7 class of nucleoside diphosphate kinase (NDPk7)
                     consists of an N-terminal DM10 domain and two functional
                     catalytic NDPk modules, NDPk7A and NDPk7B. The function of
                     the DM10 domain, which also...; cd04415"
                     /db_xref="CDD:239878"
     Site            order(99,137,145,173,179,193,203,206,208..209,217)
                     /site_type="active"
                     /db_xref="CDD:239878"
     Site            order(103,106..108,111,114,123..125)
                     /site_type="other"
                     /note="multimer interface [polypeptide binding]"
                     /db_xref="CDD:239878"
     Region          238..371
                     /region_name="NDPk7B"
                     /note="Nucleoside diphosphate kinase 7 domain B (NDPk7B):
                     The nm23-H7 class of nucleoside diphosphate kinase (NDPk7)
                     consists of an N-terminal DM10 domain and two functional
                     catalytic NDPk modules, NDPk7A and NDPk7B. The function of
                     the DM10 domain, which also...; cd04412"
                     /db_xref="CDD:239875"
     Site            order(245,285,294,322,328,342,352,355,357..358,366)
                     /site_type="active"
                     /db_xref="CDD:239875"
     Site            order(249,254..256,259,262,271..273)
                     /site_type="other"
                     /note="multimer interface [polypeptide binding]"
                     /db_xref="CDD:239875"
     CDS             1..376
                     /gene="NME7"
                     /coded_by="XM_054059868.1:74..1204"
                     /db_xref="GeneID:104055839"
ORIGIN      
        1 msqddryaft aewydphasl frrfeilyyp kdgsvemyda knrrlflkrt kyeglhledl
       61 fvgnkitvfs rhlslvdygd qytarklgsh rertlalikp dampqmgeli dniinegfti
      121 tkakmmllsr keaadfyrdh qtkpfyneli qfitsgpiva meilghdavc kwktllgpsn
      181 saaaqtdapd sirakfghdg irnaahgpds vasaaqelel ffpssggrgp vnsskltnct
      241 cciikphavy eglagkiika iinegfqisa lqmfnmeran veefyevykg vtddytdmvt
      301 elcsgpciam eiiqpecqkv frdfcgpsdp eiarhlrprt lralfgknkv qnavhctdlp
      361 edgplevqyf fkildn
//
LOCUS       XP_053915856             305 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium/potassium-transporting ATPase subunit beta-1 [Cuculus
            canorus].
ACCESSION   XP_053915856
VERSION     XP_053915856.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059881.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="sodium/potassium-transporting ATPase subunit
                     beta-1"
                     /calculated_mol_wt=34877
     Region          1..304
                     /region_name="Na_K_ATPase_bet"
                     /note="Sodium Potassium ATPase beta subunit; TIGR01107"
                     /db_xref="CDD:273446"
     CDS             1..305
                     /gene="ATP1B1"
                     /coded_by="XM_054059881.1:146..1063"
                     /db_xref="GeneID:104055838"
ORIGIN      
        1 margkakdgd gnwkkfiwns ekkellgrtg gswfkillfy vifygclagi figtiqvmll
       61 tvsefepkyq drvappgltq vpqvqkteis ftasdpksye pyvknlekfl kdysddqqte
      121 siifqdcgdi patykdrgpy ndvqgqkkvc kfkrewlenc sgindptfgy regkpcilvk
      181 lnriigfkpk apvndslpqe vmakynpyli pvhctakree dadkvgtvey ygmggysgfa
      241 lqyypyygkl lqsrylqplv avqftnltyg mevrveckay gqniqysdkd rfqgrfdikf
      301 dikss
//
LOCUS       XP_053915866             375 aa            linear   VRT 09-MAR-2023
DEFINITION  palmitoyltransferase ZDHHC20 isoform X1 [Cuculus canorus].
ACCESSION   XP_053915866
VERSION     XP_053915866.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059891.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..375
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..375
                     /product="palmitoyltransferase ZDHHC20 isoform X1"
                     /calculated_mol_wt=42783
     Region          14..310
                     /region_name="DHHC"
                     /note="DHHC palmitoyltransferase; cl19890"
                     /db_xref="CDD:418707"
     CDS             1..375
                     /gene="ZDHHC20"
                     /coded_by="XM_054059891.1:91..1218"
                     /db_xref="GeneID:104055314"
ORIGIN      
        1 mapshvlkcc qkalawvpva fialvvawsy yayvvelcvf tisstaekaa ylvvfhlsff
       61 mfiwsywkti ftapaspske fclskadkeq yekeerpesq qeilrraakd lpiytttasr
      121 tirycdrcql ikpdrchhcs acdicvlkmd hhcpwvnncv gfsnykffll flmysllycl
      181 fvaatvlqyf ikfwtlcrrk aaescpknel pdthakfhvl flffvaamff isilslfsyh
      241 cwlvgknrst ietfraptfr ngpdkngfsl gcsknlrqvf gdekkywlip iftslgdgcn
      301 fptrlvimdp eqltvssqne pakssganqs fptrplsesq nrllasdsqw veggpeeenv
      361 ksgsakkhii vsles
//
LOCUS       XP_053915873             374 aa            linear   VRT 09-MAR-2023
DEFINITION  palmitoyltransferase ZDHHC20 isoform X2 [Cuculus canorus].
ACCESSION   XP_053915873
VERSION     XP_053915873.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059898.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..374
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..374
                     /product="palmitoyltransferase ZDHHC20 isoform X2"
                     /calculated_mol_wt=42696
     Region          14..310
                     /region_name="DHHC"
                     /note="DHHC palmitoyltransferase; cl19890"
                     /db_xref="CDD:418707"
     CDS             1..374
                     /gene="ZDHHC20"
                     /coded_by="XM_054059898.1:91..1215"
                     /db_xref="GeneID:104055314"
ORIGIN      
        1 mapshvlkcc qkalawvpva fialvvawsy yayvvelcvf tisstaekaa ylvvfhlsff
       61 mfiwsywkti ftapaspske fclskadkeq yekeerpesq qeilrraakd lpiytttasr
      121 tirycdrcql ikpdrchhcs acdicvlkmd hhcpwvnncv gfsnykffll flmysllycl
      181 fvaatvlqyf ikfwtlcrrk aaescpknel pdthakfhvl flffvaamff isilslfsyh
      241 cwlvgknrst ietfraptfr ngpdkngfsl gcsknlrqvf gdekkywlip iftslgdgcn
      301 fptrlvimdp eqltvssqne pakssganqs fptrplsesq nrllasdsqw veggpeeenv
      361 ksgakkhiiv sles
//
LOCUS       XP_053915883             370 aa            linear   VRT 09-MAR-2023
DEFINITION  palmitoyltransferase ZDHHC20 isoform X3 [Cuculus canorus].
ACCESSION   XP_053915883
VERSION     XP_053915883.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059908.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..370
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..370
                     /product="palmitoyltransferase ZDHHC20 isoform X3"
                     /calculated_mol_wt=42246
     Region          14..310
                     /region_name="DHHC"
                     /note="DHHC palmitoyltransferase; cl19890"
                     /db_xref="CDD:418707"
     CDS             1..370
                     /gene="ZDHHC20"
                     /coded_by="XM_054059908.1:91..1203"
                     /db_xref="GeneID:104055314"
ORIGIN      
        1 mapshvlkcc qkalawvpva fialvvawsy yayvvelcvf tisstaekaa ylvvfhlsff
       61 mfiwsywkti ftapaspske fclskadkeq yekeerpesq qeilrraakd lpiytttasr
      121 tirycdrcql ikpdrchhcs acdicvlkmd hhcpwvnncv gfsnykffll flmysllycl
      181 fvaatvlqyf ikfwtlcrrk aaescpknel pdthakfhvl flffvaamff isilslfsyh
      241 cwlvgknrst ietfraptfr ngpdkngfsl gcsknlrqvf gdekkywlip iftslgdgcn
      301 fptrlvimdp eqltvssqne pakssganqs fptrplsesq nrllasdsqw veggpeeenv
      361 ksgfcnafca
//
LOCUS       XP_053915891             366 aa            linear   VRT 09-MAR-2023
DEFINITION  palmitoyltransferase ZDHHC20 isoform X4 [Cuculus canorus].
ACCESSION   XP_053915891
VERSION     XP_053915891.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059916.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..366
                     /product="palmitoyltransferase ZDHHC20 isoform X4"
                     /calculated_mol_wt=41834
     Region          14..301
                     /region_name="DHHC"
                     /note="DHHC palmitoyltransferase; cl19890"
                     /db_xref="CDD:418707"
     CDS             1..366
                     /gene="ZDHHC20"
                     /coded_by="XM_054059916.1:92..1192"
                     /db_xref="GeneID:104055314"
ORIGIN      
        1 mapshvlkcc qkalawvpva fialvvawsy yayvvelcvs aylvvfhlsf fmfiwsywkt
       61 iftapaspsk efclskadke qyekeerpes qqeilrraak dlpiytttas rtirycdrcq
      121 likpdrchhc sacdicvlkm dhhcpwvnnc vgfsnykffl lflmysllyc lfvaatvlqy
      181 fikfwtlcrr kaaescpkne lpdthakfhv lflffvaamf fisilslfsy hcwlvgknrs
      241 tietfraptf rngpdkngfs lgcsknlrqv fgdekkywli piftslgdgc nfptrlvimd
      301 peqltvssqn epakssganq sfptrplses qnrllasdsq wveggpeeen vksgsakkhi
      361 ivsles
//
LOCUS       XP_053915902             363 aa            linear   VRT 09-MAR-2023
DEFINITION  palmitoyltransferase ZDHHC20 isoform X5 [Cuculus canorus].
ACCESSION   XP_053915902
VERSION     XP_053915902.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059927.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..363
                     /product="palmitoyltransferase ZDHHC20 isoform X5"
                     /calculated_mol_wt=41439
     Region          14..298
                     /region_name="COG5273"
                     /note="Uncharacterized protein containing DHHC-type Zn
                     finger [General function prediction only]"
                     /db_xref="CDD:227598"
     CDS             1..363
                     /gene="ZDHHC20"
                     /coded_by="XM_054059927.1:90..1181"
                     /db_xref="GeneID:104055314"
ORIGIN      
        1 mapshvlkcc qkalawvpva fialvvawsy yayvvelcvf tisstaekaa ylvvfhlsff
       61 mfiwsywkti ftapaspske fclskadkeq yekeerpesq qeilrraakd lpiytttasr
      121 tirycdrcql ikpdrchhcs acdicvlkmd hhcpwvnncv gfsnykffll flmysllycl
      181 fvaatvlqyf ikfwtnelpd thakfhvlfl ffvaamffis ilslfsyhcw lvgknrstie
      241 tfraptfrng pdkngfslgc sknlrqvfgd ekkywlipif tslgdgcnfp trlvimdpeq
      301 ltvssqnepa kssganqsfp trplsesqnr llasdsqwve ggpeeenvks gsakkhiivs
      361 les
//
LOCUS       XP_053915911             354 aa            linear   VRT 09-MAR-2023
DEFINITION  palmitoyltransferase ZDHHC20 isoform X6 [Cuculus canorus].
ACCESSION   XP_053915911
VERSION     XP_053915911.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059936.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..354
                     /product="palmitoyltransferase ZDHHC20 isoform X6"
                     /calculated_mol_wt=40490
     Region          14..289
                     /region_name="COG5273"
                     /note="Uncharacterized protein containing DHHC-type Zn
                     finger [General function prediction only]"
                     /db_xref="CDD:227598"
     CDS             1..354
                     /gene="ZDHHC20"
                     /coded_by="XM_054059936.1:90..1154"
                     /db_xref="GeneID:104055314"
ORIGIN      
        1 mapshvlkcc qkalawvpva fialvvawsy yayvvelcvs aylvvfhlsf fmfiwsywkt
       61 iftapaspsk efclskadke qyekeerpes qqeilrraak dlpiytttas rtirycdrcq
      121 likpdrchhc sacdicvlkm dhhcpwvnnc vgfsnykffl lflmysllyc lfvaatvlqy
      181 fikfwtnelp dthakfhvlf lffvaamffi silslfsyhc wlvgknrsti etfraptfrn
      241 gpdkngfslg csknlrqvfg dekkywlipi ftslgdgcnf ptrlvimdpe qltvssqnep
      301 akssganqsf ptrplsesqn rllasdsqwv eggpeeenvk sgsakkhiiv sles
//
LOCUS       XP_053915919             341 aa            linear   VRT 09-MAR-2023
DEFINITION  palmitoyltransferase ZDHHC20 isoform X7 [Cuculus canorus].
ACCESSION   XP_053915919
VERSION     XP_053915919.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059944.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..341
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..341
                     /product="palmitoyltransferase ZDHHC20 isoform X7"
                     /calculated_mol_wt=39373
     Region          14..310
                     /region_name="DHHC"
                     /note="DHHC palmitoyltransferase; cl19890"
                     /db_xref="CDD:418707"
     CDS             1..341
                     /gene="ZDHHC20"
                     /coded_by="XM_054059944.1:91..1116"
                     /db_xref="GeneID:104055314"
ORIGIN      
        1 mapshvlkcc qkalawvpva fialvvawsy yayvvelcvf tisstaekaa ylvvfhlsff
       61 mfiwsywkti ftapaspske fclskadkeq yekeerpesq qeilrraakd lpiytttasr
      121 tirycdrcql ikpdrchhcs acdicvlkmd hhcpwvnncv gfsnykffll flmysllycl
      181 fvaatvlqyf ikfwtlcrrk aaescpknel pdthakfhvl flffvaamff isilslfsyh
      241 cwlvgknrst ietfraptfr ngpdkngfsl gcsknlrqvf gdekkywlip iftslgdgcn
      301 fptrlvimdp eqltvssqne pakrckkayy sfvgklisay y
//
LOCUS       XP_053915929             335 aa            linear   VRT 09-MAR-2023
DEFINITION  palmitoyltransferase ZDHHC20 isoform X8 [Cuculus canorus].
ACCESSION   XP_053915929
VERSION     XP_053915929.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059954.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..335
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..335
                     /product="palmitoyltransferase ZDHHC20 isoform X8"
                     /calculated_mol_wt=38703
     Region          14..310
                     /region_name="DHHC"
                     /note="DHHC palmitoyltransferase; cl19890"
                     /db_xref="CDD:418707"
     CDS             1..335
                     /gene="ZDHHC20"
                     /coded_by="XM_054059954.1:91..1098"
                     /db_xref="GeneID:104055314"
ORIGIN      
        1 mapshvlkcc qkalawvpva fialvvawsy yayvvelcvf tisstaekaa ylvvfhlsff
       61 mfiwsywkti ftapaspske fclskadkeq yekeerpesq qeilrraakd lpiytttasr
      121 tirycdrcql ikpdrchhcs acdicvlkmd hhcpwvnncv gfsnykffll flmysllycl
      181 fvaatvlqyf ikfwtlcrrk aaescpknel pdthakfhvl flffvaamff isilslfsyh
      241 cwlvgknrst ietfraptfr ngpdkngfsl gcsknlrqvf gdekkywlip iftslgdgcn
      301 fptrlvimdp eqltvssqne pakrflqril clnit
//
LOCUS       XP_053915934             315 aa            linear   VRT 09-MAR-2023
DEFINITION  palmitoyltransferase ZDHHC20 isoform X9 [Cuculus canorus].
ACCESSION   XP_053915934
VERSION     XP_053915934.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059959.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..315
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..315
                     /product="palmitoyltransferase ZDHHC20 isoform X9"
                     /calculated_mol_wt=36097
     Region          <5..250
                     /region_name="DHHC"
                     /note="DHHC palmitoyltransferase; cl19890"
                     /db_xref="CDD:418707"
     CDS             1..315
                     /gene="ZDHHC20"
                     /coded_by="XM_054059959.1:332..1279"
                     /db_xref="GeneID:104055314"
ORIGIN      
        1 mfiwsywkti ftapaspske fclskadkeq yekeerpesq qeilrraakd lpiytttasr
       61 tirycdrcql ikpdrchhcs acdicvlkmd hhcpwvnncv gfsnykffll flmysllycl
      121 fvaatvlqyf ikfwtlcrrk aaescpknel pdthakfhvl flffvaamff isilslfsyh
      181 cwlvgknrst ietfraptfr ngpdkngfsl gcsknlrqvf gdekkywlip iftslgdgcn
      241 fptrlvimdp eqltvssqne pakssganqs fptrplsesq nrllasdsqw veggpeeenv
      301 ksgsakkhii vsles
//
LOCUS       XP_009554720             103 aa            linear   VRT 09-MAR-2023
DEFINITION  ribosomal protein 63, mitochondrial [Cuculus canorus].
ACCESSION   XP_009554720
VERSION     XP_009554720.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556425.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..103
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..103
                     /product="ribosomal protein 63, mitochondrial"
                     /calculated_mol_wt=12487
     Region          13..101
                     /region_name="MRP-63"
                     /note="Mitochondrial ribosome protein 63; pfam14978"
                     /db_xref="CDD:434363"
     CDS             1..103
                     /gene="MRPL57"
                     /coded_by="XM_009556425.2:111..422"
                     /db_xref="GeneID:104055315"
ORIGIN      
        1 mflttillrk ripgkqwigk yrrprtvtla mkqamirrle ieaeneywls rpyltreqey
       61 khnaegrrar weafkslara kfpehryisd dlnhlnvtkk wtl
//
LOCUS       XP_053915948             103 aa            linear   VRT 09-MAR-2023
DEFINITION  ribosomal protein 63, mitochondrial [Cuculus canorus].
ACCESSION   XP_053915948
VERSION     XP_053915948.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059973.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..103
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..103
                     /product="ribosomal protein 63, mitochondrial"
                     /calculated_mol_wt=12487
     Region          13..101
                     /region_name="MRP-63"
                     /note="Mitochondrial ribosome protein 63; pfam14978"
                     /db_xref="CDD:434363"
     CDS             1..103
                     /gene="MRPL57"
                     /coded_by="XM_054059973.1:874..1185"
                     /db_xref="GeneID:104055315"
ORIGIN      
        1 mflttillrk ripgkqwigk yrrprtvtla mkqamirrle ieaeneywls rpyltreqey
       61 khnaegrrar weafkslara kfpehryisd dlnhlnvtkk wtl
//
LOCUS       XP_053915961            1038 aa            linear   VRT 09-MAR-2023
DEFINITION  liprin-beta-1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053915961
VERSION     XP_053915961.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059986.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1038
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1038
                     /product="liprin-beta-1 isoform X1"
                     /calculated_mol_wt=116735
     Region          <53..346
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          671..734
                     /region_name="SAM_liprin-beta1,2_repeat1"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 1;
                     cd09563"
                     /db_xref="CDD:188962"
     Region          745..807
                     /region_name="SAM_liprin-beta1,2_repeat2"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 2;
                     cd09566"
                     /db_xref="CDD:188965"
     Region          830..901
                     /region_name="SAM_liprin-beta1,2_repeat3"
                     /note="SAM domain of liprin-beta proteins repeat 3;
                     cd09569"
                     /db_xref="CDD:188968"
     CDS             1..1038
                     /gene="PPFIBP1"
                     /coded_by="XM_054059986.1:113..3229"
                     /db_xref="GeneID:104067205"
ORIGIN      
        1 mmsdasdmla aaleqmdgii agskaleysn gifdcqspts pfmgglralh lvedlrglle
       61 mmeaderegl rcqvpdstae tliewlqsqm tnghisgngd vyqerlarle ndkeslvlqv
      121 svltdqveaq gekirdlefc leehreklna teemlqqell srtsletqkl dlmaeistlk
      181 lkltsvekdr ldyedrfrdt edliqeinel rlrvgemdne rlqyekklkt tkslmaklss
      241 mkikvgqmqy ekqrmeqksq mlkdelaalk dklevkeaev krlqeklvsk lkgegieild
      301 rdenckkklk dknievqkmk kaveslmaan eekdrkieel rqslnrykkv qdmvilaqgk
      361 kgkesdsedf lnsgsistvl ldtpsltdpe kspsptpvta spihdefnvn ileenslqih
      421 tsilqisips fsstsksset aaekvktqpr pdpasemseg qstgsspeth lcdspvtssl
      481 qkssslsslr kessevdrds aqkpteikra vegnnfatlp pkspshggtg dedsfgtrka
      541 rssfgrgffk iknnkrtasa pnldrsrsas aptlaetekg sadhldlagl sprskemdsl
      601 qmtppspdsk kkargikklf gklkrsqstt fnpddmsete fkrggtrata gprlgwsrdl
      661 gqshneldmp fakwtkeqvc nwlqdqglgs yinngkhwil sgqtllqasq pdlekelgik
      721 hplhrkklql alqalgseee nnhgkldyhw vtrwlddigl pqyktqfdeg kvdgrmlhym
      781 svddllslkv vsvlhhlsik raiqvlrinn fepnclrrrp sdennvtpse vtqwtnhrvm
      841 ewlrsvdlae yapnlrgsgv hgglmvlepr fnvetmaqll nippnktllr rhlathfnll
      901 igqeaqqqkr eamespdyvl ltatakvkpk klafsnfgsl rkkkqddvee yvcpmelgra
      961 pgsgskkgfk pgldirvydd ddldrleqme dsegtvrqig afseginnlt hmlkedemfk
     1021 dfttrspsts itdedsnv
//
LOCUS       XP_053915970            1038 aa            linear   VRT 09-MAR-2023
DEFINITION  liprin-beta-1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053915970
VERSION     XP_053915970.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054059995.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1038
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1038
                     /product="liprin-beta-1 isoform X1"
                     /calculated_mol_wt=116735
     Region          <53..346
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          671..734
                     /region_name="SAM_liprin-beta1,2_repeat1"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 1;
                     cd09563"
                     /db_xref="CDD:188962"
     Region          745..807
                     /region_name="SAM_liprin-beta1,2_repeat2"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 2;
                     cd09566"
                     /db_xref="CDD:188965"
     Region          830..901
                     /region_name="SAM_liprin-beta1,2_repeat3"
                     /note="SAM domain of liprin-beta proteins repeat 3;
                     cd09569"
                     /db_xref="CDD:188968"
     CDS             1..1038
                     /gene="PPFIBP1"
                     /coded_by="XM_054059995.1:273..3389"
                     /db_xref="GeneID:104067205"
ORIGIN      
        1 mmsdasdmla aaleqmdgii agskaleysn gifdcqspts pfmgglralh lvedlrglle
       61 mmeaderegl rcqvpdstae tliewlqsqm tnghisgngd vyqerlarle ndkeslvlqv
      121 svltdqveaq gekirdlefc leehreklna teemlqqell srtsletqkl dlmaeistlk
      181 lkltsvekdr ldyedrfrdt edliqeinel rlrvgemdne rlqyekklkt tkslmaklss
      241 mkikvgqmqy ekqrmeqksq mlkdelaalk dklevkeaev krlqeklvsk lkgegieild
      301 rdenckkklk dknievqkmk kaveslmaan eekdrkieel rqslnrykkv qdmvilaqgk
      361 kgkesdsedf lnsgsistvl ldtpsltdpe kspsptpvta spihdefnvn ileenslqih
      421 tsilqisips fsstsksset aaekvktqpr pdpasemseg qstgsspeth lcdspvtssl
      481 qkssslsslr kessevdrds aqkpteikra vegnnfatlp pkspshggtg dedsfgtrka
      541 rssfgrgffk iknnkrtasa pnldrsrsas aptlaetekg sadhldlagl sprskemdsl
      601 qmtppspdsk kkargikklf gklkrsqstt fnpddmsete fkrggtrata gprlgwsrdl
      661 gqshneldmp fakwtkeqvc nwlqdqglgs yinngkhwil sgqtllqasq pdlekelgik
      721 hplhrkklql alqalgseee nnhgkldyhw vtrwlddigl pqyktqfdeg kvdgrmlhym
      781 svddllslkv vsvlhhlsik raiqvlrinn fepnclrrrp sdennvtpse vtqwtnhrvm
      841 ewlrsvdlae yapnlrgsgv hgglmvlepr fnvetmaqll nippnktllr rhlathfnll
      901 igqeaqqqkr eamespdyvl ltatakvkpk klafsnfgsl rkkkqddvee yvcpmelgra
      961 pgsgskkgfk pgldirvydd ddldrleqme dsegtvrqig afseginnlt hmlkedemfk
     1021 dfttrspsts itdedsnv
//
LOCUS       XP_053915979            1038 aa            linear   VRT 09-MAR-2023
DEFINITION  liprin-beta-1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053915979
VERSION     XP_053915979.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060004.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1038
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1038
                     /product="liprin-beta-1 isoform X1"
                     /calculated_mol_wt=116735
     Region          <53..346
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          671..734
                     /region_name="SAM_liprin-beta1,2_repeat1"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 1;
                     cd09563"
                     /db_xref="CDD:188962"
     Region          745..807
                     /region_name="SAM_liprin-beta1,2_repeat2"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 2;
                     cd09566"
                     /db_xref="CDD:188965"
     Region          830..901
                     /region_name="SAM_liprin-beta1,2_repeat3"
                     /note="SAM domain of liprin-beta proteins repeat 3;
                     cd09569"
                     /db_xref="CDD:188968"
     CDS             1..1038
                     /gene="PPFIBP1"
                     /coded_by="XM_054060004.1:160..3276"
                     /db_xref="GeneID:104067205"
ORIGIN      
        1 mmsdasdmla aaleqmdgii agskaleysn gifdcqspts pfmgglralh lvedlrglle
       61 mmeaderegl rcqvpdstae tliewlqsqm tnghisgngd vyqerlarle ndkeslvlqv
      121 svltdqveaq gekirdlefc leehreklna teemlqqell srtsletqkl dlmaeistlk
      181 lkltsvekdr ldyedrfrdt edliqeinel rlrvgemdne rlqyekklkt tkslmaklss
      241 mkikvgqmqy ekqrmeqksq mlkdelaalk dklevkeaev krlqeklvsk lkgegieild
      301 rdenckkklk dknievqkmk kaveslmaan eekdrkieel rqslnrykkv qdmvilaqgk
      361 kgkesdsedf lnsgsistvl ldtpsltdpe kspsptpvta spihdefnvn ileenslqih
      421 tsilqisips fsstsksset aaekvktqpr pdpasemseg qstgsspeth lcdspvtssl
      481 qkssslsslr kessevdrds aqkpteikra vegnnfatlp pkspshggtg dedsfgtrka
      541 rssfgrgffk iknnkrtasa pnldrsrsas aptlaetekg sadhldlagl sprskemdsl
      601 qmtppspdsk kkargikklf gklkrsqstt fnpddmsete fkrggtrata gprlgwsrdl
      661 gqshneldmp fakwtkeqvc nwlqdqglgs yinngkhwil sgqtllqasq pdlekelgik
      721 hplhrkklql alqalgseee nnhgkldyhw vtrwlddigl pqyktqfdeg kvdgrmlhym
      781 svddllslkv vsvlhhlsik raiqvlrinn fepnclrrrp sdennvtpse vtqwtnhrvm
      841 ewlrsvdlae yapnlrgsgv hgglmvlepr fnvetmaqll nippnktllr rhlathfnll
      901 igqeaqqqkr eamespdyvl ltatakvkpk klafsnfgsl rkkkqddvee yvcpmelgra
      961 pgsgskkgfk pgldirvydd ddldrleqme dsegtvrqig afseginnlt hmlkedemfk
     1021 dfttrspsts itdedsnv
//
LOCUS       XP_053915990            1038 aa            linear   VRT 09-MAR-2023
DEFINITION  liprin-beta-1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053915990
VERSION     XP_053915990.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060015.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1038
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1038
                     /product="liprin-beta-1 isoform X1"
                     /calculated_mol_wt=116735
     Region          <53..346
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          671..734
                     /region_name="SAM_liprin-beta1,2_repeat1"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 1;
                     cd09563"
                     /db_xref="CDD:188962"
     Region          745..807
                     /region_name="SAM_liprin-beta1,2_repeat2"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 2;
                     cd09566"
                     /db_xref="CDD:188965"
     Region          830..901
                     /region_name="SAM_liprin-beta1,2_repeat3"
                     /note="SAM domain of liprin-beta proteins repeat 3;
                     cd09569"
                     /db_xref="CDD:188968"
     CDS             1..1038
                     /gene="PPFIBP1"
                     /coded_by="XM_054060015.1:140..3256"
                     /db_xref="GeneID:104067205"
ORIGIN      
        1 mmsdasdmla aaleqmdgii agskaleysn gifdcqspts pfmgglralh lvedlrglle
       61 mmeaderegl rcqvpdstae tliewlqsqm tnghisgngd vyqerlarle ndkeslvlqv
      121 svltdqveaq gekirdlefc leehreklna teemlqqell srtsletqkl dlmaeistlk
      181 lkltsvekdr ldyedrfrdt edliqeinel rlrvgemdne rlqyekklkt tkslmaklss
      241 mkikvgqmqy ekqrmeqksq mlkdelaalk dklevkeaev krlqeklvsk lkgegieild
      301 rdenckkklk dknievqkmk kaveslmaan eekdrkieel rqslnrykkv qdmvilaqgk
      361 kgkesdsedf lnsgsistvl ldtpsltdpe kspsptpvta spihdefnvn ileenslqih
      421 tsilqisips fsstsksset aaekvktqpr pdpasemseg qstgsspeth lcdspvtssl
      481 qkssslsslr kessevdrds aqkpteikra vegnnfatlp pkspshggtg dedsfgtrka
      541 rssfgrgffk iknnkrtasa pnldrsrsas aptlaetekg sadhldlagl sprskemdsl
      601 qmtppspdsk kkargikklf gklkrsqstt fnpddmsete fkrggtrata gprlgwsrdl
      661 gqshneldmp fakwtkeqvc nwlqdqglgs yinngkhwil sgqtllqasq pdlekelgik
      721 hplhrkklql alqalgseee nnhgkldyhw vtrwlddigl pqyktqfdeg kvdgrmlhym
      781 svddllslkv vsvlhhlsik raiqvlrinn fepnclrrrp sdennvtpse vtqwtnhrvm
      841 ewlrsvdlae yapnlrgsgv hgglmvlepr fnvetmaqll nippnktllr rhlathfnll
      901 igqeaqqqkr eamespdyvl ltatakvkpk klafsnfgsl rkkkqddvee yvcpmelgra
      961 pgsgskkgfk pgldirvydd ddldrleqme dsegtvrqig afseginnlt hmlkedemfk
     1021 dfttrspsts itdedsnv
//
LOCUS       XP_053916001            1038 aa            linear   VRT 09-MAR-2023
DEFINITION  liprin-beta-1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053916001
VERSION     XP_053916001.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060026.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1038
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1038
                     /product="liprin-beta-1 isoform X1"
                     /calculated_mol_wt=116735
     Region          <53..346
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          671..734
                     /region_name="SAM_liprin-beta1,2_repeat1"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 1;
                     cd09563"
                     /db_xref="CDD:188962"
     Region          745..807
                     /region_name="SAM_liprin-beta1,2_repeat2"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 2;
                     cd09566"
                     /db_xref="CDD:188965"
     Region          830..901
                     /region_name="SAM_liprin-beta1,2_repeat3"
                     /note="SAM domain of liprin-beta proteins repeat 3;
                     cd09569"
                     /db_xref="CDD:188968"
     CDS             1..1038
                     /gene="PPFIBP1"
                     /coded_by="XM_054060026.1:84..3200"
                     /db_xref="GeneID:104067205"
ORIGIN      
        1 mmsdasdmla aaleqmdgii agskaleysn gifdcqspts pfmgglralh lvedlrglle
       61 mmeaderegl rcqvpdstae tliewlqsqm tnghisgngd vyqerlarle ndkeslvlqv
      121 svltdqveaq gekirdlefc leehreklna teemlqqell srtsletqkl dlmaeistlk
      181 lkltsvekdr ldyedrfrdt edliqeinel rlrvgemdne rlqyekklkt tkslmaklss
      241 mkikvgqmqy ekqrmeqksq mlkdelaalk dklevkeaev krlqeklvsk lkgegieild
      301 rdenckkklk dknievqkmk kaveslmaan eekdrkieel rqslnrykkv qdmvilaqgk
      361 kgkesdsedf lnsgsistvl ldtpsltdpe kspsptpvta spihdefnvn ileenslqih
      421 tsilqisips fsstsksset aaekvktqpr pdpasemseg qstgsspeth lcdspvtssl
      481 qkssslsslr kessevdrds aqkpteikra vegnnfatlp pkspshggtg dedsfgtrka
      541 rssfgrgffk iknnkrtasa pnldrsrsas aptlaetekg sadhldlagl sprskemdsl
      601 qmtppspdsk kkargikklf gklkrsqstt fnpddmsete fkrggtrata gprlgwsrdl
      661 gqshneldmp fakwtkeqvc nwlqdqglgs yinngkhwil sgqtllqasq pdlekelgik
      721 hplhrkklql alqalgseee nnhgkldyhw vtrwlddigl pqyktqfdeg kvdgrmlhym
      781 svddllslkv vsvlhhlsik raiqvlrinn fepnclrrrp sdennvtpse vtqwtnhrvm
      841 ewlrsvdlae yapnlrgsgv hgglmvlepr fnvetmaqll nippnktllr rhlathfnll
      901 igqeaqqqkr eamespdyvl ltatakvkpk klafsnfgsl rkkkqddvee yvcpmelgra
      961 pgsgskkgfk pgldirvydd ddldrleqme dsegtvrqig afseginnlt hmlkedemfk
     1021 dfttrspsts itdedsnv
//
LOCUS       XP_053916012            1035 aa            linear   VRT 09-MAR-2023
DEFINITION  liprin-beta-1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053916012
VERSION     XP_053916012.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060037.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1035
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1035
                     /product="liprin-beta-1 isoform X2"
                     /calculated_mol_wt=116422
     Region          <53..346
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          668..731
                     /region_name="SAM_liprin-beta1,2_repeat1"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 1;
                     cd09563"
                     /db_xref="CDD:188962"
     Region          742..804
                     /region_name="SAM_liprin-beta1,2_repeat2"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 2;
                     cd09566"
                     /db_xref="CDD:188965"
     Region          827..898
                     /region_name="SAM_liprin-beta1,2_repeat3"
                     /note="SAM domain of liprin-beta proteins repeat 3;
                     cd09569"
                     /db_xref="CDD:188968"
     CDS             1..1035
                     /gene="PPFIBP1"
                     /coded_by="XM_054060037.1:113..3220"
                     /db_xref="GeneID:104067205"
ORIGIN      
        1 mmsdasdmla aaleqmdgii agskaleysn gifdcqspts pfmgglralh lvedlrglle
       61 mmeaderegl rcqvpdstae tliewlqsqm tnghisgngd vyqerlarle ndkeslvlqv
      121 svltdqveaq gekirdlefc leehreklna teemlqqell srtsletqkl dlmaeistlk
      181 lkltsvekdr ldyedrfrdt edliqeinel rlrvgemdne rlqyekklkt tkslmaklss
      241 mkikvgqmqy ekqrmeqksq mlkdelaalk dklevkeaev krlqeklvsk lkgegieild
      301 rdenckkklk dknievqkmk kaveslmaan eekdrkieel rqslnrykkv qdmvilaqgk
      361 esdsedflns gsistvlldt psltdpeksp sptpvtaspi hdefnvnile enslqihtsi
      421 lqisipsfss tskssetaae kvktqprpdp asemsegqst gsspethlcd spvtsslqks
      481 sslsslrkes sevdrdsaqk pteikraveg nnfatlppks pshggtgded sfgtrkarss
      541 fgrgffkikn nkrtasapnl drsrsasapt laetekgsad hldlaglspr skemdslqmt
      601 ppspdskkka rgikklfgkl krsqsttfnp ddmsetefkr ggtratagpr lgwsrdlgqs
      661 hneldmpfak wtkeqvcnwl qdqglgsyin ngkhwilsgq tllqasqpdl ekelgikhpl
      721 hrkklqlalq algseeennh gkldyhwvtr wlddiglpqy ktqfdegkvd grmlhymsvd
      781 dllslkvvsv lhhlsikrai qvlrinnfep nclrrrpsde nnvtpsevtq wtnhrvmewl
      841 rsvdlaeyap nlrgsgvhgg lmvleprfnv etmaqllnip pnktllrrhl athfnlligq
      901 eaqqqkream espdyvllta takvkpkkla fsnfgslrkk kqddveeyvc pmelgrapgs
      961 gskkgfkpgl dirvyddddl drleqmedse gtvrqigafs eginnlthml kedemfkdft
     1021 trspstsitd edsnv
//
LOCUS       XP_053916022            1027 aa            linear   VRT 09-MAR-2023
DEFINITION  liprin-beta-1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053916022
VERSION     XP_053916022.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060047.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1027
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1027
                     /product="liprin-beta-1 isoform X3"
                     /calculated_mol_wt=115593
     Region          <53..346
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          660..723
                     /region_name="SAM_liprin-beta1,2_repeat1"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 1;
                     cd09563"
                     /db_xref="CDD:188962"
     Region          734..796
                     /region_name="SAM_liprin-beta1,2_repeat2"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 2;
                     cd09566"
                     /db_xref="CDD:188965"
     Region          819..890
                     /region_name="SAM_liprin-beta1,2_repeat3"
                     /note="SAM domain of liprin-beta proteins repeat 3;
                     cd09569"
                     /db_xref="CDD:188968"
     CDS             1..1027
                     /gene="PPFIBP1"
                     /coded_by="XM_054060047.1:113..3196"
                     /db_xref="GeneID:104067205"
ORIGIN      
        1 mmsdasdmla aaleqmdgii agskaleysn gifdcqspts pfmgglralh lvedlrglle
       61 mmeaderegl rcqvpdstae tliewlqsqm tnghisgngd vyqerlarle ndkeslvlqv
      121 svltdqveaq gekirdlefc leehreklna teemlqqell srtsletqkl dlmaeistlk
      181 lkltsvekdr ldyedrfrdt edliqeinel rlrvgemdne rlqyekklkt tkslmaklss
      241 mkikvgqmqy ekqrmeqksq mlkdelaalk dklevkeaev krlqeklvsk lkgegieild
      301 rdenckkklk dknievqkmk kaveslmaan eekdrkieel rqslnrykkv qdmvilaqgk
      361 kgkesdsedf lnsgsistvl ldtpsltdpe kspsptpvta spihdefnvn ileenslqih
      421 tsilqisips fsstsksset aaekvktqpr pdpasemseg qstgsspeth lcdspvtssl
      481 qkssslsslr kessevdrds aqkpteikra vegnnfatlp pkspshggtg dedsfgtrka
      541 rssfgrgffk iknnkrtasa pnlaetekgs adhldlagls prskemdslq mtppspdskk
      601 kargikklfg klkrsqsttf npddmsetef krggtratag prlgwsrdlg qshneldmpf
      661 akwtkeqvcn wlqdqglgsy inngkhwils gqtllqasqp dlekelgikh plhrkklqla
      721 lqalgseeen nhgkldyhwv trwlddiglp qyktqfdegk vdgrmlhyms vddllslkvv
      781 svlhhlsikr aiqvlrinnf epnclrrrps dennvtpsev tqwtnhrvme wlrsvdlaey
      841 apnlrgsgvh gglmvleprf nvetmaqlln ippnktllrr hlathfnlli gqeaqqqkre
      901 amespdyvll tatakvkpkk lafsnfgslr kkkqddveey vcpmelgrap gsgskkgfkp
      961 gldirvyddd dldrleqmed segtvrqiga fseginnlth mlkedemfkd fttrspstsi
     1021 tdedsnv
//
LOCUS       XP_053916031            1027 aa            linear   VRT 09-MAR-2023
DEFINITION  liprin-beta-1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053916031
VERSION     XP_053916031.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060056.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1027
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1027
                     /product="liprin-beta-1 isoform X4"
                     /calculated_mol_wt=115406
     Region          <53..335
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          660..723
                     /region_name="SAM_liprin-beta1,2_repeat1"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 1;
                     cd09563"
                     /db_xref="CDD:188962"
     Region          734..796
                     /region_name="SAM_liprin-beta1,2_repeat2"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 2;
                     cd09566"
                     /db_xref="CDD:188965"
     Region          819..890
                     /region_name="SAM_liprin-beta1,2_repeat3"
                     /note="SAM domain of liprin-beta proteins repeat 3;
                     cd09569"
                     /db_xref="CDD:188968"
     CDS             1..1027
                     /gene="PPFIBP1"
                     /coded_by="XM_054060056.1:113..3196"
                     /db_xref="GeneID:104067205"
ORIGIN      
        1 mmsdasdmla aaleqmdgii agskaleysn gifdcqspts pfmgglralh lvedlrglle
       61 mmeaderegl rcqvpdstae tliewlqsqm tnghisgngd vyqerlarle ndkeslvlqv
      121 svltdqveaq gekirdlefc leehreklna teemlqqell srtsletqkl dlmaeistlk
      181 lkltsvekdr ldyedrfrdt edliqeinel rlrvgemdne rlqyekklkt tkslmaklss
      241 mkikvgqmqy ekqrmeqksq mlkdelaalk dklevkeaev krlqeklvsk lkgegieild
      301 rdievqkmkk aveslmaane ekdrkieelr qslnrykkvq dmvilaqgkk gkesdsedfl
      361 nsgsistvll dtpsltdpek spsptpvtas pihdefnvni leenslqiht silqisipsf
      421 sstsksseta aekvktqprp dpasemsegq stgsspethl cdspvtsslq kssslsslrk
      481 essevdrdsa qkpteikrav egnnfatlpp kspshggtgd edsfgtrkar ssfgrgffki
      541 knnkrtasap nldrsrsasa ptlaetekgs adhldlagls prskemdslq mtppspdskk
      601 kargikklfg klkrsqsttf npddmsetef krggtratag prlgwsrdlg qshneldmpf
      661 akwtkeqvcn wlqdqglgsy inngkhwils gqtllqasqp dlekelgikh plhrkklqla
      721 lqalgseeen nhgkldyhwv trwlddiglp qyktqfdegk vdgrmlhyms vddllslkvv
      781 svlhhlsikr aiqvlrinnf epnclrrrps dennvtpsev tqwtnhrvme wlrsvdlaey
      841 apnlrgsgvh gglmvleprf nvetmaqlln ippnktllrr hlathfnlli gqeaqqqkre
      901 amespdyvll tatakvkpkk lafsnfgslr kkkqddveey vcpmelgrap gsgskkgfkp
      961 gldirvyddd dldrleqmed segtvrqiga fseginnlth mlkedemfkd fttrspstsi
     1021 tdedsnv
//
LOCUS       XP_053916037            1024 aa            linear   VRT 09-MAR-2023
DEFINITION  liprin-beta-1 isoform X5 [Cuculus canorus].
ACCESSION   XP_053916037
VERSION     XP_053916037.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060062.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1024
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1024
                     /product="liprin-beta-1 isoform X5"
                     /calculated_mol_wt=115092
     Region          <53..335
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          657..720
                     /region_name="SAM_liprin-beta1,2_repeat1"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 1;
                     cd09563"
                     /db_xref="CDD:188962"
     Region          731..793
                     /region_name="SAM_liprin-beta1,2_repeat2"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 2;
                     cd09566"
                     /db_xref="CDD:188965"
     Region          816..887
                     /region_name="SAM_liprin-beta1,2_repeat3"
                     /note="SAM domain of liprin-beta proteins repeat 3;
                     cd09569"
                     /db_xref="CDD:188968"
     CDS             1..1024
                     /gene="PPFIBP1"
                     /coded_by="XM_054060062.1:113..3187"
                     /db_xref="GeneID:104067205"
ORIGIN      
        1 mmsdasdmla aaleqmdgii agskaleysn gifdcqspts pfmgglralh lvedlrglle
       61 mmeaderegl rcqvpdstae tliewlqsqm tnghisgngd vyqerlarle ndkeslvlqv
      121 svltdqveaq gekirdlefc leehreklna teemlqqell srtsletqkl dlmaeistlk
      181 lkltsvekdr ldyedrfrdt edliqeinel rlrvgemdne rlqyekklkt tkslmaklss
      241 mkikvgqmqy ekqrmeqksq mlkdelaalk dklevkeaev krlqeklvsk lkgegieild
      301 rdievqkmkk aveslmaane ekdrkieelr qslnrykkvq dmvilaqgke sdsedflnsg
      361 sistvlldtp sltdpeksps ptpvtaspih defnvnilee nslqihtsil qisipsfsst
      421 skssetaaek vktqprpdpa semsegqstg sspethlcds pvtsslqkss slsslrkess
      481 evdrdsaqkp teikravegn nfatlppksp shggtgdeds fgtrkarssf grgffkiknn
      541 krtasapnld rsrsasaptl aetekgsadh ldlaglsprs kemdslqmtp pspdskkkar
      601 gikklfgklk rsqsttfnpd dmsetefkrg gtratagprl gwsrdlgqsh neldmpfakw
      661 tkeqvcnwlq dqglgsyinn gkhwilsgqt llqasqpdle kelgikhplh rkklqlalqa
      721 lgseeennhg kldyhwvtrw lddiglpqyk tqfdegkvdg rmlhymsvdd llslkvvsvl
      781 hhlsikraiq vlrinnfepn clrrrpsden nvtpsevtqw tnhrvmewlr svdlaeyapn
      841 lrgsgvhggl mvleprfnve tmaqllnipp nktllrrhla thfnlligqe aqqqkreame
      901 spdyvlltat akvkpkklaf snfgslrkkk qddveeyvcp melgrapgsg skkgfkpgld
      961 irvyddddld rleqmedseg tvrqigafse ginnlthmlk edemfkdftt rspstsitde
     1021 dsnv
//
LOCUS       XP_053916045            1007 aa            linear   VRT 09-MAR-2023
DEFINITION  liprin-beta-1 isoform X6 [Cuculus canorus].
ACCESSION   XP_053916045
VERSION     XP_053916045.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060070.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1007
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1007
                     /product="liprin-beta-1 isoform X6"
                     /calculated_mol_wt=113064
     Region          <104..>318
                     /region_name="PRK03918"
                     /note="DNA double-strand break repair ATPase Rad50"
                     /db_xref="CDD:235175"
     Region          640..703
                     /region_name="SAM_liprin-beta1,2_repeat1"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 1;
                     cd09563"
                     /db_xref="CDD:188962"
     Region          714..776
                     /region_name="SAM_liprin-beta1,2_repeat2"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 2;
                     cd09566"
                     /db_xref="CDD:188965"
     Region          799..870
                     /region_name="SAM_liprin-beta1,2_repeat3"
                     /note="SAM domain of liprin-beta proteins repeat 3;
                     cd09569"
                     /db_xref="CDD:188968"
     CDS             1..1007
                     /gene="PPFIBP1"
                     /coded_by="XM_054060070.1:106..3129"
                     /db_xref="GeneID:104067205"
ORIGIN      
        1 mmsdasdmla aaleqmdgii agskaleysn gifdcqspts pfmgglralh lvedlrglle
       61 mmeaderegl rcqvpdstae tliewlqsqm tnghisgngd vyqerlarle ndkeslvlqv
      121 svltdqveaq gekirdlefc leehreklna teemlqqell srtsletqkl dlmaeistlk
      181 lkltsvekdr ldyedrfrdt edliqeinel rlrvgemdne rlqyekklkt tkdelaalkd
      241 klevkeaevk rlqeklvskl kgegieildr denckkklkd knievqkmkk aveslmaane
      301 ekdrkieelr qslnrykkvq dmvilaqgkk gkesdsedfl nsgsistvll dtpsltdpek
      361 spsptpvtas pihdefnvni leenslqiht silqisipsf sstsksseta aekvktqprp
      421 dpasemsegq stgsspethl cdspvtsslq kssslsslrk essevdrdsa qkpteikrav
      481 egnnfatlpp kspshggtgd edsfgtrkar ssfgrgffki knnkrtasap nldrsrsasa
      541 ptlaetekgs adhldlagls prskemdslq mtppspdskk kargikklfg klkrsqsttf
      601 npddmsetef krggtratag prlgwsrdlg qshneldmpf akwtkeqvcn wlqdqglgsy
      661 inngkhwils gqtllqasqp dlekelgikh plhrkklqla lqalgseeen nhgkldyhwv
      721 trwlddiglp qyktqfdegk vdgrmlhyms vddllslkvv svlhhlsikr aiqvlrinnf
      781 epnclrrrps dennvtpsev tqwtnhrvme wlrsvdlaey apnlrgsgvh gglmvleprf
      841 nvetmaqlln ippnktllrr hlathfnlli gqeaqqqkre amespdyvll tatakvkpkk
      901 lafsnfgslr kkkqddveey vcpmelgrap gsgskkgfkp gldirvyddd dldrleqmed
      961 segtvrqiga fseginnlth mlkedemfkd fttrspstsi tdedsnv
//
LOCUS       XP_053916051             996 aa            linear   VRT 09-MAR-2023
DEFINITION  liprin-beta-1 isoform X7 [Cuculus canorus].
ACCESSION   XP_053916051
VERSION     XP_053916051.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060076.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..996
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..996
                     /product="liprin-beta-1 isoform X7"
                     /calculated_mol_wt=111734
     Region          <104..>307
                     /region_name="PRK03918"
                     /note="DNA double-strand break repair ATPase Rad50"
                     /db_xref="CDD:235175"
     Region          629..692
                     /region_name="SAM_liprin-beta1,2_repeat1"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 1;
                     cd09563"
                     /db_xref="CDD:188962"
     Region          703..765
                     /region_name="SAM_liprin-beta1,2_repeat2"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 2;
                     cd09566"
                     /db_xref="CDD:188965"
     Region          788..859
                     /region_name="SAM_liprin-beta1,2_repeat3"
                     /note="SAM domain of liprin-beta proteins repeat 3;
                     cd09569"
                     /db_xref="CDD:188968"
     CDS             1..996
                     /gene="PPFIBP1"
                     /coded_by="XM_054060076.1:106..3096"
                     /db_xref="GeneID:104067205"
ORIGIN      
        1 mmsdasdmla aaleqmdgii agskaleysn gifdcqspts pfmgglralh lvedlrglle
       61 mmeaderegl rcqvpdstae tliewlqsqm tnghisgngd vyqerlarle ndkeslvlqv
      121 svltdqveaq gekirdlefc leehreklna teemlqqell srtsletqkl dlmaeistlk
      181 lkltsvekdr ldyedrfrdt edliqeinel rlrvgemdne rlqyekklkt tkdelaalkd
      241 klevkeaevk rlqeklvskl kgegieildr dievqkmkka veslmaanee kdrkieelrq
      301 slnrykkvqd mvilaqgkkg kesdsedfln sgsistvlld tpsltdpeks psptpvtasp
      361 ihdefnvnil eenslqihts ilqisipsfs stskssetaa ekvktqprpd pasemsegqs
      421 tgsspethlc dspvtsslqk ssslsslrke ssevdrdsaq kpteikrave gnnfatlppk
      481 spshggtgde dsfgtrkars sfgrgffkik nnkrtasapn ldrsrsasap tlaetekgsa
      541 dhldlaglsp rskemdslqm tppspdskkk argikklfgk lkrsqsttfn pddmsetefk
      601 rggtratagp rlgwsrdlgq shneldmpfa kwtkeqvcnw lqdqglgsyi nngkhwilsg
      661 qtllqasqpd lekelgikhp lhrkklqlal qalgseeenn hgkldyhwvt rwlddiglpq
      721 yktqfdegkv dgrmlhymsv ddllslkvvs vlhhlsikra iqvlrinnfe pnclrrrpsd
      781 ennvtpsevt qwtnhrvmew lrsvdlaeya pnlrgsgvhg glmvleprfn vetmaqllni
      841 ppnktllrrh lathfnllig qeaqqqkrea mespdyvllt atakvkpkkl afsnfgslrk
      901 kkqddveeyv cpmelgrapg sgskkgfkpg ldirvydddd ldrleqmeds egtvrqigaf
      961 seginnlthm lkedemfkdf ttrspstsit dedsnv
//
LOCUS       XP_053916060             993 aa            linear   VRT 09-MAR-2023
DEFINITION  liprin-beta-1 isoform X8 [Cuculus canorus].
ACCESSION   XP_053916060
VERSION     XP_053916060.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060085.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..993
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..993
                     /product="liprin-beta-1 isoform X8"
                     /calculated_mol_wt=111421
     Region          <104..>307
                     /region_name="PRK03918"
                     /note="DNA double-strand break repair ATPase Rad50"
                     /db_xref="CDD:235175"
     Region          626..689
                     /region_name="SAM_liprin-beta1,2_repeat1"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 1;
                     cd09563"
                     /db_xref="CDD:188962"
     Region          700..762
                     /region_name="SAM_liprin-beta1,2_repeat2"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 2;
                     cd09566"
                     /db_xref="CDD:188965"
     Region          785..856
                     /region_name="SAM_liprin-beta1,2_repeat3"
                     /note="SAM domain of liprin-beta proteins repeat 3;
                     cd09569"
                     /db_xref="CDD:188968"
     CDS             1..993
                     /gene="PPFIBP1"
                     /coded_by="XM_054060085.1:113..3094"
                     /db_xref="GeneID:104067205"
ORIGIN      
        1 mmsdasdmla aaleqmdgii agskaleysn gifdcqspts pfmgglralh lvedlrglle
       61 mmeaderegl rcqvpdstae tliewlqsqm tnghisgngd vyqerlarle ndkeslvlqv
      121 svltdqveaq gekirdlefc leehreklna teemlqqell srtsletqkl dlmaeistlk
      181 lkltsvekdr ldyedrfrdt edliqeinel rlrvgemdne rlqyekklkt tkdelaalkd
      241 klevkeaevk rlqeklvskl kgegieildr dievqkmkka veslmaanee kdrkieelrq
      301 slnrykkvqd mvilaqgkes dsedflnsgs istvlldtps ltdpekspsp tpvtaspihd
      361 efnvnileen slqihtsilq isipsfssts kssetaaekv ktqprpdpas emsegqstgs
      421 spethlcdsp vtsslqksss lsslrkesse vdrdsaqkpt eikravegnn fatlppksps
      481 hggtgdedsf gtrkarssfg rgffkiknnk rtasapnldr srsasaptla etekgsadhl
      541 dlaglsprsk emdslqmtpp spdskkkarg ikklfgklkr sqsttfnpdd msetefkrgg
      601 tratagprlg wsrdlgqshn eldmpfakwt keqvcnwlqd qglgsyinng khwilsgqtl
      661 lqasqpdlek elgikhplhr kklqlalqal gseeennhgk ldyhwvtrwl ddiglpqykt
      721 qfdegkvdgr mlhymsvddl lslkvvsvlh hlsikraiqv lrinnfepnc lrrrpsdenn
      781 vtpsevtqwt nhrvmewlrs vdlaeyapnl rgsgvhgglm vleprfnvet maqllnippn
      841 ktllrrhlat hfnlligqea qqqkreames pdyvlltata kvkpkklafs nfgslrkkkq
      901 ddveeyvcpm elgrapgsgs kkgfkpgldi rvyddddldr leqmedsegt vrqigafseg
      961 innlthmlke demfkdfttr spstsitded snv
//
LOCUS       XP_053916069             971 aa            linear   VRT 09-MAR-2023
DEFINITION  liprin-beta-1 isoform X9 [Cuculus canorus].
ACCESSION   XP_053916069
VERSION     XP_053916069.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060094.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..971
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..971
                     /product="liprin-beta-1 isoform X9"
                     /calculated_mol_wt=109647
     Region          <36..>277
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     Region          604..667
                     /region_name="SAM_liprin-beta1,2_repeat1"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 1;
                     cd09563"
                     /db_xref="CDD:188962"
     Region          678..740
                     /region_name="SAM_liprin-beta1,2_repeat2"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 2;
                     cd09566"
                     /db_xref="CDD:188965"
     Region          763..834
                     /region_name="SAM_liprin-beta1,2_repeat3"
                     /note="SAM domain of liprin-beta proteins repeat 3;
                     cd09569"
                     /db_xref="CDD:188968"
     CDS             1..971
                     /gene="PPFIBP1"
                     /coded_by="XM_054060094.1:100..3015"
                     /db_xref="GeneID:104067205"
ORIGIN      
        1 mkiamtsmey swdihghcvw lnktnghisg ngdvyqerla rlendkeslv lqvsvltdqv
       61 eaqgekirdl efcleehrek lnateemlqq ellsrtslet qkldlmaeis tlklkltsve
      121 kdrldyedrf rdtedliqei nelrlrvgem dnerlqyekk lkttkslmak lssmkikvgq
      181 mqyekqrmeq ksqmlkdela alkdklevke aevkrlqekl vsklkgegie ildrdenckk
      241 klkdknievq kmkkaveslm aaneekdrki eelrqslnry kkvqdmvila qgkkgkesds
      301 edflnsgsis tvlldtpslt dpekspsptp vtaspihdef nvnileensl qihtsilqis
      361 ipsfsstsks setaaekvkt qprpdpasem segqstgssp ethlcdspvt sslqksssls
      421 slrkessevd rdsaqkptei kravegnnfa tlppkspshg gtgdedsfgt rkarssfgrg
      481 ffkiknnkrt asapnldrsr sasaptlaet ekgsadhldl aglsprskem dslqmtppsp
      541 dskkkargik klfgklkrsq sttfnpddms etefkrggtr atagprlgws rdlgqshnel
      601 dmpfakwtke qvcnwlqdqg lgsyinngkh wilsgqtllq asqpdlekel gikhplhrkk
      661 lqlalqalgs eeennhgkld yhwvtrwldd iglpqyktqf degkvdgrml hymsvddlls
      721 lkvvsvlhhl sikraiqvlr innfepnclr rrpsdennvt psevtqwtnh rvmewlrsvd
      781 laeyapnlrg sgvhgglmvl eprfnvetma qllnippnkt llrrhlathf nlligqeaqq
      841 qkreamespd yvlltatakv kpkklafsnf gslrkkkqdd veeyvcpmel grapgsgskk
      901 gfkpgldirv yddddldrle qmedsegtvr qigafsegin nlthmlkede mfkdfttrsp
      961 stsitdedsn v
//
LOCUS       XP_053916078             950 aa            linear   VRT 09-MAR-2023
DEFINITION  liprin-beta-1 isoform X10 [Cuculus canorus].
ACCESSION   XP_053916078
VERSION     XP_053916078.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060103.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..950
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..950
                     /product="liprin-beta-1 isoform X10"
                     /calculated_mol_wt=107112
     Region          <15..>256
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     Region          583..646
                     /region_name="SAM_liprin-beta1,2_repeat1"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 1;
                     cd09563"
                     /db_xref="CDD:188962"
     Region          657..719
                     /region_name="SAM_liprin-beta1,2_repeat2"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 2;
                     cd09566"
                     /db_xref="CDD:188965"
     Region          742..813
                     /region_name="SAM_liprin-beta1,2_repeat3"
                     /note="SAM domain of liprin-beta proteins repeat 3;
                     cd09569"
                     /db_xref="CDD:188968"
     CDS             1..950
                     /gene="PPFIBP1"
                     /coded_by="XM_054060103.1:26..2878"
                     /db_xref="GeneID:104067205"
ORIGIN      
        1 mptnghisgn gdvyqerlar lendkeslvl qvsvltdqve aqgekirdle fcleehrekl
       61 nateemlqqe llsrtsletq kldlmaeist lklkltsvek drldyedrfr dtedliqein
      121 elrlrvgemd nerlqyekkl kttkslmakl ssmkikvgqm qyekqrmeqk sqmlkdelaa
      181 lkdklevkea evkrlqeklv sklkgegiei ldrdenckkk lkdknievqk mkkaveslma
      241 aneekdrkie elrqslnryk kvqdmvilaq gkkgkesdse dflnsgsist vlldtpsltd
      301 pekspsptpv taspihdefn vnileenslq ihtsilqisi psfsstskss etaaekvktq
      361 prpdpasems egqstgsspe thlcdspvts slqkssslss lrkessevdr dsaqkpteik
      421 ravegnnfat lppkspshgg tgdedsfgtr karssfgrgf fkiknnkrta sapnldrsrs
      481 asaptlaete kgsadhldla glsprskemd slqmtppspd skkkargikk lfgklkrsqs
      541 ttfnpddmse tefkrggtra tagprlgwsr dlgqshneld mpfakwtkeq vcnwlqdqgl
      601 gsyinngkhw ilsgqtllqa sqpdlekelg ikhplhrkkl qlalqalgse eennhgkldy
      661 hwvtrwlddi glpqyktqfd egkvdgrmlh ymsvddllsl kvvsvlhhls ikraiqvlri
      721 nnfepnclrr rpsdennvtp sevtqwtnhr vmewlrsvdl aeyapnlrgs gvhgglmvle
      781 prfnvetmaq llnippnktl lrrhlathfn lligqeaqqq kreamespdy vlltatakvk
      841 pkklafsnfg slrkkkqddv eeyvcpmelg rapgsgskkg fkpgldirvy ddddldrleq
      901 medsegtvrq igafseginn lthmlkedem fkdfttrsps tsitdedsnv
//
LOCUS       XP_053916087             918 aa            linear   VRT 09-MAR-2023
DEFINITION  liprin-beta-1 isoform X11 [Cuculus canorus].
ACCESSION   XP_053916087
VERSION     XP_053916087.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060112.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..918
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..918
                     /product="liprin-beta-1 isoform X11"
                     /calculated_mol_wt=103504
     Region          <37..>240
                     /region_name="PRK03918"
                     /note="DNA double-strand break repair ATPase Rad50"
                     /db_xref="CDD:235175"
     Region          551..614
                     /region_name="SAM_liprin-beta1,2_repeat1"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 1;
                     cd09563"
                     /db_xref="CDD:188962"
     Region          625..687
                     /region_name="SAM_liprin-beta1,2_repeat2"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 2;
                     cd09566"
                     /db_xref="CDD:188965"
     Region          710..781
                     /region_name="SAM_liprin-beta1,2_repeat3"
                     /note="SAM domain of liprin-beta proteins repeat 3;
                     cd09569"
                     /db_xref="CDD:188968"
     CDS             1..918
                     /gene="PPFIBP1"
                     /coded_by="XM_054060112.1:100..2856"
                     /db_xref="GeneID:104067205"
ORIGIN      
        1 mkiamtsmey swdihghcvw lnktnghisg ngdvyqerla rlendkeslv lqvsvltdqv
       61 eaqgekirdl efcleehrek lnateemlqq ellsrtslet qkldlmaeis tlklkltsve
      121 kdrldyedrf rdtedliqei nelrlrvgem dnerlqyekk lkttkdelaa lkdklevkea
      181 evkrlqeklv sklkgegiei ldrdievqkm kkaveslmaa neekdrkiee lrqslnrykk
      241 vqdmvilaqg kkgkesdsed flnsgsistv lldtpsltdp ekspsptpvt aspihdefnv
      301 nileenslqi htsilqisip sfsstsksse taaekvktqp rpdpasemse gqstgsspet
      361 hlcdspvtss lqkssslssl rkessevdrd saqkpteikr avegnnfatl ppkspshggt
      421 gdedsfgtrk arssfgrgff kiknnkrtas apnlaetekg sadhldlagl sprskemdsl
      481 qmtppspdsk kkargikklf gklkrsqstt fnpddmsete fkrggtrata gprlgwsrdl
      541 gqshneldmp fakwtkeqvc nwlqdqglgs yinngkhwil sgqtllqasq pdlekelgik
      601 hplhrkklql alqalgseee nnhgkldyhw vtrwlddigl pqyktqfdeg kvdgrmlhym
      661 svddllslkv vsvlhhlsik raiqvlrinn fepnclrrrp sdennvtpse vtqwtnhrvm
      721 ewlrsvdlae yapnlrgsgv hgglmvlepr fnvetmaqll nippnktllr rhlathfnll
      781 igqeaqqqkr eamespdyvl ltatakvkpk klafsnfgsl rkkkqddvee yvcpmelgra
      841 pgsgskkgfk pgldirvydd ddldrleqme dsegtvrqig afseginnlt hmlkedemfk
      901 dfttrspsts itdedsnv
//
LOCUS       XP_053916097            1013 aa            linear   VRT 09-MAR-2023
DEFINITION  liprin-beta-1 isoform X12 [Cuculus canorus].
ACCESSION   XP_053916097
VERSION     XP_053916097.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060122.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1013
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1013
                     /product="liprin-beta-1 isoform X12"
                     /calculated_mol_wt=113950
     Region          <53..335
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          646..709
                     /region_name="SAM_liprin-beta1,2_repeat1"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 1;
                     cd09563"
                     /db_xref="CDD:188962"
     Region          720..782
                     /region_name="SAM_liprin-beta1,2_repeat2"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 2;
                     cd09566"
                     /db_xref="CDD:188965"
     Region          805..876
                     /region_name="SAM_liprin-beta1,2_repeat3"
                     /note="SAM domain of liprin-beta proteins repeat 3;
                     cd09569"
                     /db_xref="CDD:188968"
     CDS             1..1013
                     /gene="PPFIBP1"
                     /coded_by="XM_054060122.1:273..3314"
                     /db_xref="GeneID:104067205"
ORIGIN      
        1 mmsdasdmla aaleqmdgii agskaleysn gifdcqspts pfmgglralh lvedlrglle
       61 mmeaderegl rcqvpdstae tliewlqsqm tnghisgngd vyqerlarle ndkeslvlqv
      121 svltdqveaq gekirdlefc leehreklna teemlqqell srtsletqkl dlmaeistlk
      181 lkltsvekdr ldyedrfrdt edliqeinel rlrvgemdne rlqyekklkt tkslmaklss
      241 mkikvgqmqy ekqrmeqksq mlkdelaalk dklevkeaev krlqeklvsk lkgegieild
      301 rdievqkmkk aveslmaane ekdrkieelr qslnrykkvq dmvilaqgke sdsedflnsg
      361 sistvlldtp sltdpeksps ptpvtaspih defnvnilee nslqihtsil qisipsfsst
      421 skssetaaek vktqprpdpa semsegqstg sspethlcds pvtsslqkss slsslrkess
      481 evdrdsaqkp teikravegn nfatlppksp shggtgdeds fgtrkarssf grgffkiknn
      541 krtasapnla etekgsadhl dlaglsprsk emdslqmtpp spdskkkarg ikklfgklkr
      601 sqsttfnpdd msetefkrgg tratagprlg wsrdlgqshn eldmpfakwt keqvcnwlqd
      661 qglgsyinng khwilsgqtl lqasqpdlek elgikhplhr kklqlalqal gseeennhgk
      721 ldyhwvtrwl ddiglpqykt qfdegkvdgr mlhymsvddl lslkvvsvlh hlsikraiqv
      781 lrinnfepnc lrrrpsdenn vtpsevtqwt nhrvmewlrs vdlaeyapnl rgsgvhgglm
      841 vleprfnvet maqllnippn ktllrrhlat hfnlligqea qqqkreames pdyvlltata
      901 kvkpkklafs nfgslrkkkq ddveeyvcpm elgrapgsgs kkgfkpgldi rvyddddldr
      961 leqmedsegt vrqigafseg innlthmlke demfkdfttr spstsitded snv
//
LOCUS       XP_053916105             982 aa            linear   VRT 09-MAR-2023
DEFINITION  liprin-beta-1 isoform X13 [Cuculus canorus].
ACCESSION   XP_053916105
VERSION     XP_053916105.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060130.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..982
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..982
                     /product="liprin-beta-1 isoform X13"
                     /calculated_mol_wt=110279
     Region          <104..>307
                     /region_name="PRK03918"
                     /note="DNA double-strand break repair ATPase Rad50"
                     /db_xref="CDD:235175"
     Region          615..678
                     /region_name="SAM_liprin-beta1,2_repeat1"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 1;
                     cd09563"
                     /db_xref="CDD:188962"
     Region          689..751
                     /region_name="SAM_liprin-beta1,2_repeat2"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 2;
                     cd09566"
                     /db_xref="CDD:188965"
     Region          774..845
                     /region_name="SAM_liprin-beta1,2_repeat3"
                     /note="SAM domain of liprin-beta proteins repeat 3;
                     cd09569"
                     /db_xref="CDD:188968"
     CDS             1..982
                     /gene="PPFIBP1"
                     /coded_by="XM_054060130.1:272..3220"
                     /db_xref="GeneID:104067205"
ORIGIN      
        1 mmsdasdmla aaleqmdgii agskaleysn gifdcqspts pfmgglralh lvedlrglle
       61 mmeaderegl rcqvpdstae tliewlqsqm tnghisgngd vyqerlarle ndkeslvlqv
      121 svltdqveaq gekirdlefc leehreklna teemlqqell srtsletqkl dlmaeistlk
      181 lkltsvekdr ldyedrfrdt edliqeinel rlrvgemdne rlqyekklkt tkdelaalkd
      241 klevkeaevk rlqeklvskl kgegieildr dievqkmkka veslmaanee kdrkieelrq
      301 slnrykkvqd mvilaqgkes dsedflnsgs istvlldtps ltdpekspsp tpvtaspihd
      361 efnvnileen slqihtsilq isipsfssts kssetaaekv ktqprpdpas emsegqstgs
      421 spethlcdsp vtsslqksss lsslrkesse vdrdsaqkpt eikravegnn fatlppksps
      481 hggtgdedsf gtrkarssfg rgffkiknnk rtasapnlae tekgsadhld laglsprske
      541 mdslqmtpps pdskkkargi kklfgklkrs qsttfnpddm setefkrggt ratagprlgw
      601 srdlgqshne ldmpfakwtk eqvcnwlqdq glgsyinngk hwilsgqtll qasqpdleke
      661 lgikhplhrk klqlalqalg seeennhgkl dyhwvtrwld diglpqyktq fdegkvdgrm
      721 lhymsvddll slkvvsvlhh lsikraiqvl rinnfepncl rrrpsdennv tpsevtqwtn
      781 hrvmewlrsv dlaeyapnlr gsgvhgglmv leprfnvetm aqllnippnk tllrrhlath
      841 fnlligqeaq qqkreamesp dyvlltatak vkpkklafsn fgslrkkkqd dveeyvcpme
      901 lgrapgsgsk kgfkpgldir vyddddldrl eqmedsegtv rqigafsegi nnlthmlked
      961 emfkdfttrs pstsitdeds nv
//
LOCUS       XP_053916110             996 aa            linear   VRT 09-MAR-2023
DEFINITION  liprin-beta-1 isoform X14 [Cuculus canorus].
ACCESSION   XP_053916110
VERSION     XP_053916110.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060135.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..996
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..996
                     /product="liprin-beta-1 isoform X14"
                     /calculated_mol_wt=111922
     Region          <104..>318
                     /region_name="PRK03918"
                     /note="DNA double-strand break repair ATPase Rad50"
                     /db_xref="CDD:235175"
     Region          629..692
                     /region_name="SAM_liprin-beta1,2_repeat1"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 1;
                     cd09563"
                     /db_xref="CDD:188962"
     Region          703..765
                     /region_name="SAM_liprin-beta1,2_repeat2"
                     /note="SAM domain of liprin-beta1,2 proteins repeat 2;
                     cd09566"
                     /db_xref="CDD:188965"
     Region          788..859
                     /region_name="SAM_liprin-beta1,2_repeat3"
                     /note="SAM domain of liprin-beta proteins repeat 3;
                     cd09569"
                     /db_xref="CDD:188968"
     CDS             1..996
                     /gene="PPFIBP1"
                     /coded_by="XM_054060135.1:272..3262"
                     /db_xref="GeneID:104067205"
ORIGIN      
        1 mmsdasdmla aaleqmdgii agskaleysn gifdcqspts pfmgglralh lvedlrglle
       61 mmeaderegl rcqvpdstae tliewlqsqm tnghisgngd vyqerlarle ndkeslvlqv
      121 svltdqveaq gekirdlefc leehreklna teemlqqell srtsletqkl dlmaeistlk
      181 lkltsvekdr ldyedrfrdt edliqeinel rlrvgemdne rlqyekklkt tkdelaalkd
      241 klevkeaevk rlqeklvskl kgegieildr denckkklkd knievqkmkk aveslmaane
      301 ekdrkieelr qslnrykkvq dmvilaqgkk gkesdsedfl nsgsistvll dtpsltdpek
      361 spsptpvtas pihdefnvni leenslqiht silqisipsf sstsksseta aekvktqprp
      421 dpasemsegq stgsspethl cdspvtsslq kssslsslrk essevdrdsa qkpteikrav
      481 egnnfatlpp kspshggtgd edsfgtrkar ssfgrgffki knnkrtasap nlaetekgsa
      541 dhldlaglsp rskemdslqm tppspdskkk argikklfgk lkrsqsttfn pddmsetefk
      601 rggtratagp rlgwsrdlgq shneldmpfa kwtkeqvcnw lqdqglgsyi nngkhwilsg
      661 qtllqasqpd lekelgikhp lhrkklqlal qalgseeenn hgkldyhwvt rwlddiglpq
      721 yktqfdegkv dgrmlhymsv ddllslkvvs vlhhlsikra iqvlrinnfe pnclrrrpsd
      781 ennvtpsevt qwtnhrvmew lrsvdlaeya pnlrgsgvhg glmvleprfn vetmaqllni
      841 ppnktllrrh lathfnllig qeaqqqkrea mespdyvllt atakvkpkkl afsnfgslrk
      901 kkqddveeyv cpmelgrapg sgskkgfkpg ldirvydddd ldrleqmeds egtvrqigaf
      961 seginnlthm lkedemfkdf ttrspstsit dedsnv
//
LOCUS       XP_053916119             360 aa            linear   VRT 09-MAR-2023
DEFINITION  lactosylceramide 4-alpha-galactosyltransferase [Cuculus canorus].
ACCESSION   XP_053916119
VERSION     XP_053916119.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060144.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..360
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..360
                     /product="lactosylceramide 4-alpha-galactosyltransferase"
                     /calculated_mol_wt=40957
     Region          95..203
                     /region_name="Gly_transf_sug"
                     /note="Glycosyltransferase sugar-binding region containing
                     DXD motif; cl19952"
                     /db_xref="CDD:418730"
     Region          221..348
                     /region_name="Gb3_synth"
                     /note="Alpha 1,4-glycosyltransferase conserved region;
                     pfam04572"
                     /db_xref="CDD:428017"
     CDS             1..360
                     /gene="LOC104067406"
                     /coded_by="XM_054060144.1:294..1376"
                     /db_xref="GeneID:104067406"
ORIGIN      
        1 mfscrpkltt mmpshklgal filiisfvff asvmfywrpg edaegqlysm ptqrrceell
       61 phlplptagg pppspgdvff vetsertkps ylftcsvesa armhpetrvv vlmkglangn
      121 aslpnhwgfs llscfpnvef qpldlpelfs gtplakwysq sehqkepyfl pvlsdasrit
      181 imwkfggiyl dtdfivlknl knltnalglq sqdvlngafl sfkpkhefiq lcmqdfveny
      241 dgwiwahqgp hlltrvfkkw csisniqhni sckgvhalsp eafypirwed wkklfeaiss
      301 selhkllkdt yavhvwnkls hgtrleitsq allaqlysqs cpstyekvkn dseeqsrpvm
//
LOCUS       XP_053916125             360 aa            linear   VRT 09-MAR-2023
DEFINITION  lactosylceramide 4-alpha-galactosyltransferase [Cuculus canorus].
ACCESSION   XP_053916125
VERSION     XP_053916125.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060150.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..360
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..360
                     /product="lactosylceramide 4-alpha-galactosyltransferase"
                     /calculated_mol_wt=40957
     Region          95..203
                     /region_name="Gly_transf_sug"
                     /note="Glycosyltransferase sugar-binding region containing
                     DXD motif; cl19952"
                     /db_xref="CDD:418730"
     Region          221..348
                     /region_name="Gb3_synth"
                     /note="Alpha 1,4-glycosyltransferase conserved region;
                     pfam04572"
                     /db_xref="CDD:428017"
     CDS             1..360
                     /gene="LOC104067406"
                     /coded_by="XM_054060150.1:287..1369"
                     /db_xref="GeneID:104067406"
ORIGIN      
        1 mfscrpkltt mmpshklgal filiisfvff asvmfywrpg edaegqlysm ptqrrceell
       61 phlplptagg pppspgdvff vetsertkps ylftcsvesa armhpetrvv vlmkglangn
      121 aslpnhwgfs llscfpnvef qpldlpelfs gtplakwysq sehqkepyfl pvlsdasrit
      181 imwkfggiyl dtdfivlknl knltnalglq sqdvlngafl sfkpkhefiq lcmqdfveny
      241 dgwiwahqgp hlltrvfkkw csisniqhni sckgvhalsp eafypirwed wkklfeaiss
      301 selhkllkdt yavhvwnkls hgtrleitsq allaqlysqs cpstyekvkn dseeqsrpvm
//
LOCUS       XP_053916133             360 aa            linear   VRT 09-MAR-2023
DEFINITION  lactosylceramide 4-alpha-galactosyltransferase [Cuculus canorus].
ACCESSION   XP_053916133
VERSION     XP_053916133.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060158.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..360
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..360
                     /product="lactosylceramide 4-alpha-galactosyltransferase"
                     /calculated_mol_wt=40957
     Region          95..203
                     /region_name="Gly_transf_sug"
                     /note="Glycosyltransferase sugar-binding region containing
                     DXD motif; cl19952"
                     /db_xref="CDD:418730"
     Region          221..348
                     /region_name="Gb3_synth"
                     /note="Alpha 1,4-glycosyltransferase conserved region;
                     pfam04572"
                     /db_xref="CDD:428017"
     CDS             1..360
                     /gene="LOC104067406"
                     /coded_by="XM_054060158.1:194..1276"
                     /db_xref="GeneID:104067406"
ORIGIN      
        1 mfscrpkltt mmpshklgal filiisfvff asvmfywrpg edaegqlysm ptqrrceell
       61 phlplptagg pppspgdvff vetsertkps ylftcsvesa armhpetrvv vlmkglangn
      121 aslpnhwgfs llscfpnvef qpldlpelfs gtplakwysq sehqkepyfl pvlsdasrit
      181 imwkfggiyl dtdfivlknl knltnalglq sqdvlngafl sfkpkhefiq lcmqdfveny
      241 dgwiwahqgp hlltrvfkkw csisniqhni sckgvhalsp eafypirwed wkklfeaiss
      301 selhkllkdt yavhvwnkls hgtrleitsq allaqlysqs cpstyekvkn dseeqsrpvm
//
LOCUS       XP_053916138             360 aa            linear   VRT 09-MAR-2023
DEFINITION  lactosylceramide 4-alpha-galactosyltransferase [Cuculus canorus].
ACCESSION   XP_053916138
VERSION     XP_053916138.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060163.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..360
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..360
                     /product="lactosylceramide 4-alpha-galactosyltransferase"
                     /calculated_mol_wt=40957
     Region          95..203
                     /region_name="Gly_transf_sug"
                     /note="Glycosyltransferase sugar-binding region containing
                     DXD motif; cl19952"
                     /db_xref="CDD:418730"
     Region          221..348
                     /region_name="Gb3_synth"
                     /note="Alpha 1,4-glycosyltransferase conserved region;
                     pfam04572"
                     /db_xref="CDD:428017"
     CDS             1..360
                     /gene="LOC104067406"
                     /coded_by="XM_054060163.1:194..1276"
                     /db_xref="GeneID:104067406"
ORIGIN      
        1 mfscrpkltt mmpshklgal filiisfvff asvmfywrpg edaegqlysm ptqrrceell
       61 phlplptagg pppspgdvff vetsertkps ylftcsvesa armhpetrvv vlmkglangn
      121 aslpnhwgfs llscfpnvef qpldlpelfs gtplakwysq sehqkepyfl pvlsdasrit
      181 imwkfggiyl dtdfivlknl knltnalglq sqdvlngafl sfkpkhefiq lcmqdfveny
      241 dgwiwahqgp hlltrvfkkw csisniqhni sckgvhalsp eafypirwed wkklfeaiss
      301 selhkllkdt yavhvwnkls hgtrleitsq allaqlysqs cpstyekvkn dseeqsrpvm
//
LOCUS       XP_053916149             358 aa            linear   VRT 09-MAR-2023
DEFINITION  lactosylceramide 4-alpha-galactosyltransferase [Cuculus canorus].
ACCESSION   XP_053916149
VERSION     XP_053916149.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060174.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..358
                     /product="lactosylceramide 4-alpha-galactosyltransferase"
                     /calculated_mol_wt=41040
     Region          100..208
                     /region_name="Gly_transf_sug"
                     /note="Glycosyltransferase sugar-binding region containing
                     DXD motif; pfam04488"
                     /db_xref="CDD:398274"
     Region          226..352
                     /region_name="Gb3_synth"
                     /note="Alpha 1,4-glycosyltransferase conserved region;
                     pfam04572"
                     /db_xref="CDD:428017"
     CDS             1..358
                     /gene="A4GALT"
                     /coded_by="XM_054060174.1:185..1261"
                     /db_xref="GeneID:104067407"
ORIGIN      
        1 mlrmpscllk ltrvvlshkl ralfilafkf msfvsimlyw ritedpngrg qiyrlpveih
       61 cahsvpsppn aiaggpppsp gdvffvetse rtkpsylftc svesaarthp etrvvvlmkg
      121 langnaslpn hwgfsllscf pnvefqpldl pelfsgtpla kwylqaqqrw epyfipilsd
      181 acriaimwkf ggiyldtdfi vlknlknltn vlgtqskyvl ngaflsfkpk hkfielcmqd
      241 fvenynswiw ghqgpqlltr vfkkwcsirs lqsstscrgv salpreafyp irwqdwkkyf
      301 evinsselhh lfnntyavhv wnkksqgtrk kitsqallaq lhshfcpaty diikkdfe
//
LOCUS       XP_053916156             358 aa            linear   VRT 09-MAR-2023
DEFINITION  lactosylceramide 4-alpha-galactosyltransferase [Cuculus canorus].
ACCESSION   XP_053916156
VERSION     XP_053916156.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060181.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..358
                     /product="lactosylceramide 4-alpha-galactosyltransferase"
                     /calculated_mol_wt=41040
     Region          100..208
                     /region_name="Gly_transf_sug"
                     /note="Glycosyltransferase sugar-binding region containing
                     DXD motif; pfam04488"
                     /db_xref="CDD:398274"
     Region          226..352
                     /region_name="Gb3_synth"
                     /note="Alpha 1,4-glycosyltransferase conserved region;
                     pfam04572"
                     /db_xref="CDD:428017"
     CDS             1..358
                     /gene="A4GALT"
                     /coded_by="XM_054060181.1:186..1262"
                     /db_xref="GeneID:104067407"
ORIGIN      
        1 mlrmpscllk ltrvvlshkl ralfilafkf msfvsimlyw ritedpngrg qiyrlpveih
       61 cahsvpsppn aiaggpppsp gdvffvetse rtkpsylftc svesaarthp etrvvvlmkg
      121 langnaslpn hwgfsllscf pnvefqpldl pelfsgtpla kwylqaqqrw epyfipilsd
      181 acriaimwkf ggiyldtdfi vlknlknltn vlgtqskyvl ngaflsfkpk hkfielcmqd
      241 fvenynswiw ghqgpqlltr vfkkwcsirs lqsstscrgv salpreafyp irwqdwkkyf
      301 evinsselhh lfnntyavhv wnkksqgtrk kitsqallaq lhshfcpaty diikkdfe
//
LOCUS       XP_053916166             328 aa            linear   VRT 09-MAR-2023
DEFINITION  NADH-cytochrome b5 reductase 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053916166
VERSION     XP_053916166.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060191.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..328
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..328
                     /product="NADH-cytochrome b5 reductase 3 isoform X1"
                     /calculated_mol_wt=36976
     Region          <65..328
                     /region_name="PLN02252"
                     /note="nitrate reductase [NADPH]"
                     /db_xref="CDD:215141"
     CDS             1..328
                     /gene="LOC104067227"
                     /coded_by="XM_054060191.1:395..1381"
                     /db_xref="GeneID:104067227"
ORIGIN      
        1 mvplfqhglp wgnsasmdtp csthgvmtpg silqlgrvvt ypiwliytti lrlfrnphpa
       61 itlkdpevky alrlidkeev shdtrrfrfa lpsmdhvlgl pvgqhiylsa ridgalvirp
      121 ytpvssdddk gfvdlvakiy fkgvhpkfpd ggkmsqylds lkigdtidfr gpsgllvykg
      181 kgefairpek kaepvtkkvk yvgmiaggtg itpmlqiira iikdkddptv cqllfanqte
      241 kdillrsele eiqaqnpnrf kcwytldrap enweysqgfv nqemirdhlp ppqddvlilm
      301 cgpppmiqya cipnldklgy tkdmrfsf
//
LOCUS       XP_009568236             301 aa            linear   VRT 09-MAR-2023
DEFINITION  NADH-cytochrome b5 reductase 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_009568236
VERSION     XP_009568236.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009569941.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..301
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..301
                     /product="NADH-cytochrome b5 reductase 3 isoform X2"
                     /calculated_mol_wt=34085
     Region          <38..301
                     /region_name="PLN02252"
                     /note="nitrate reductase [NADPH]"
                     /db_xref="CDD:215141"
     CDS             1..301
                     /gene="LOC104067227"
                     /coded_by="XM_009569941.2:87..992"
                     /db_xref="GeneID:104067227"
ORIGIN      
        1 mgaqlstlgr vvtypiwliy ttilrlfrnp hpaitlkdpe vkyalrlidk eevshdtrrf
       61 rfalpsmdhv lglpvgqhiy lsaridgalv irpytpvssd ddkgfvdlva kiyfkgvhpk
      121 fpdggkmsqy ldslkigdti dfrgpsgllv ykgkgefair pekkaepvtk kvkyvgmiag
      181 gtgitpmlqi iraiikdkdd ptvcqllfan qtekdillrs eleeiqaqnp nrfkcwytld
      241 rapenweysq gfvnqemird hlpppqddvl ilmcgpppmi qyacipnldk lgytkdmrfs
      301 f
//
LOCUS       XP_009568248             289 aa            linear   VRT 09-MAR-2023
DEFINITION  poly(U)-specific endoribonuclease-A [Cuculus canorus].
ACCESSION   XP_009568248
VERSION     XP_009568248.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009569953.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009568248.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..289
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..289
                     /product="poly(U)-specific endoribonuclease-A"
                     /calculated_mol_wt=32855
     Region          10..280
                     /region_name="XendoU"
                     /note="Endoribonuclease XendoU; pfam09412"
                     /db_xref="CDD:462792"
     CDS             1..289
                     /gene="LOC104067238"
                     /coded_by="XM_009569953.2:315..1184"
                     /db_xref="GeneID:104067238"
ORIGIN      
        1 mangkafnhe lsklfsemwn mdvnrlmpgk dytidlqgka gaaqqgdsav qdnaarhlfh
       61 nvneeclksi ktfatfisll dnyetstgta evvtpeeive nncfldaila tevmklahey
      121 llkkklakpn ladfkdqlyd iwfqlyarke gdrpdscgfe hvfvgetrrg kqilglhnwv
      181 qfylqekrnq idykgyiaqk nktkpdkddq vlsiqfswkg svkpvgstfi gvspefefal
      241 ytiifllsee rvtrqavkie gyelqivvyr hghhigtayp vllstssed
//
LOCUS       XP_053916194             267 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: rab15 effector protein [Cuculus canorus].
ACCESSION   XP_053916194
VERSION     XP_053916194.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060219.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 3 indels
            internal stop codons :: corrected 2 genomic stop codons
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..267
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..267
                     /product="LOW QUALITY PROTEIN: rab15 effector protein"
                     /calculated_mol_wt=29318
     Region          35..267
                     /region_name="Rab15_effector"
                     /note="Rab15 effector; pfam15208"
                     /db_xref="CDD:464562"
     CDS             1..267
                     /gene="REP15"
                     /coded_by="XM_054060219.1:2574..3377"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons;
                     deleted 2 bases in 1 codon; substituted 2 bases at 2
                     genomic stop codons"
                     /db_xref="GeneID:104067216"
ORIGIN      
        1 mglaepstyr alaakergfp kvvcmrkqpp saqkmdqkvs hgnnlenkae iliiskaysq
       61 gvvhasqrvm dylgrvdpqs kfqpatnmls kiflvkfisf ctekgaeeci tsskmskqqs
      121 sxldwiwtls gadkxvklqt avqalllael vrsedptevl dnccreavla dkcfqnmsrc
      181 ekfclvgwdc lglfimfsvp gkpkdixgvm idciakekqk crlsgrnvll rfvtstdsll
      241 ptrdglexcl cvknrlkevg nmyinfl
//
LOCUS       XP_053916205            3221 aa            linear   VRT 09-MAR-2023
DEFINITION  golgin subfamily B member 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053916205
VERSION     XP_053916205.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060230.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3221
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3221
                     /product="golgin subfamily B member 1 isoform X1"
                     /calculated_mol_wt=370038
     Region          <32..>264
                     /region_name="GumC"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; COG3206"
                     /db_xref="CDD:442439"
     Region          186..1011
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          753..>1516
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          1250..2122
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          1908..2739
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          <2427..3060
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..3221
                     /gene="GOLGB1"
                     /coded_by="XM_054060230.1:200..9865"
                     /db_xref="GeneID:104061432"
ORIGIN      
        1 mlsrlsglas tvlqelsgdd gdavtestaa vqalepeaes meeapedlle rlaqteklvv
       61 qlkdlirekd allqqkeavl keereaadak lmklklqaka klaslnkrie eltekgsplp
      121 aqalseeqac pkcqndqnts eghreeaeal keqlrereet vqdlkeqlaq akvnlkdaei
      181 khatqlsslq evireketll eeqahqhqae llkiaaqsdl evemqqnlrt lqrkleeqee
      241 allgrtqvve llqqelraae qqnqilrdqc qkmevdlssl rdvldaerre sqdlrekmel
      301 elaerkmfth rlqdevqcls eqleearraq televkykdl eqeqklevee knqqisclkv
      361 veqelqsrha alegendrlk qdverllvls aensatiqkl edelaqkpee fvycqnelrs
      421 qsvqdvelkk qdettspeet vdqeeqngts llptenlerq qteettrler vlreppqeav
      481 vvaenakqnk digpemksqd lqileapssc vdssstgvsg erlhseaqkp lddtsvlpea
      541 gtescqpgiv dylaaekqke lsvlllelke aqeevdflks qlrspssqts vgsqteeaai
      601 hlednsqirf lereeqkisg tqnelgggsl lreaeiqdig vlqekslqev pqrsivpcag
      661 emrevstadp eldtsrsqel lklqtqiael qiilqksees ykkelgekga eiqrlnqlae
      721 eyrrkieasd nafcvlteer dqllcqtkel stvtelkerv kqleenlals ekqrlsdsqs
      781 sllkeqiqsl knefkskenk iealqkdlde aqlqlsdqdm qlkdlrsqie kkecevldle
      841 qllrrntaer eeltqnlask gheaanlgql vaeqtrsikn lqqtllekdq qmteislsms
      901 ekmvllneek fslenelrsl keqtslllka qeekdkniet rdtslkceas eqqfeteaas
      961 kenevlvnql ellkkeneqi krklqaalvn rkellkkvsk lenelvrler epesetsvar
     1021 gaegeenvtr viskevsler qpseeyliqq lsekeselqs irkdlldkem teaqlqavie
     1081 emrrslqgkm divsgkdeiv gsqtigdkvt etnkspkdge eneqnssaaa nldenqklal
     1141 keristleqe keqlqkklqe alvsrkdtik kaqekdrhhr eqlkqqkddy nvlqeqfdkq
     1201 skekesiqaq lrqlqeqkgs tegilgnqag ldsscteaen ttnntvvqva gvseeevemk
     1261 leklqmekek ledivshmqn elackselvf hlqehvaqlf leieglkrss dqaeakaasl
     1321 qteleknlar isgesaledl ktlmdqkdee ikflnlqlge ksealanvqa rliekedsir
     1381 slrgqletqa qaheeqskrl qtellevqek qddsaeaake khqmqrklqa alisrkealk
     1441 eskslkeela gakttiesls vrltdmenqi cghvkerdal ieksarltde qekliaevdk
     1501 vltenqnldg ccknlkitld gvllekekle keveslksfq aaessewhek ygdlqkeyet
     1561 llqsyenvsn eaeriqrvle tvrqekqdvf mklksveakk eetdkqlqea geeidgmkek
     1621 mrkfakskqq kileleeene klraemhfad gelrktgdvi tesslkedle ssrrdcqsls
     1681 tqleavmaek grlnqeitdl kchlqvtese lkesrglldk yvaqktteka anqavgtppp
     1741 vertenqmdi sfgpeappae leqkafdgss pcegldtyiq qieelteria elednrrase
     1801 qqlgdirmcv ealasekkal etqmeeklre lnvlrdtvak meqtvqktkd dlvrmtelkd
     1861 tleaekddle erlmnqlael ngsignyqqd atdfqmeneq lkqelqslqr vvheleeekr
     1921 qmvmekskas sekqkefvek lkcnwrgdts thvkelqell kqkqqeikql qkeciksqek
     1981 nsslertika lefvqsesqk eveaakeala kavedtkkaq aelalckvtl ddtqseaarv
     2041 vaesikvkee lqankenivv qmkkkdedfe rrlerereeh skeiksieer laalqrekds
     2101 veaavgdlqd llktkdqeak qlegnlnktl aqlaaftrsm sslqddrdrv idesktwekk
     2161 ftetiqkkee eirlkeetcv vlkdqmkhma irveelqahi srlehnkkdw eseskkelqh
     2221 hqktcemlqe ekkelliqle esqklssqsq neqqklesei sslkhqladl qrsftncelv
     2281 redlgslvkq qettlqnfkf scqqlevdlq askdltdklh eeisakdqki msllsakeea
     2341 vmvalsdlqq qhaeemkele hrlskeeedk kaleneknky idkldhltek mktsreeskq
     2401 qkaqldsftk smsslqddrd rilrdykqle erhlviilek dqliqeaaae nnklkeeirs
     2461 fhsrmddlns enaklnaelv ryredlnqvi sikdsqqkql lktqlqriqt lekekaiiet
     2521 qlkesertqd elrkgmealr edkvsmtqei etltsslsrv qnemtalleg gpivdyqaql
     2581 kareeeaqel sqklslsqqr iteleeellc vqkdaskkvg eaedrlrkel khlhhdagim
     2641 rnetetaeer vaelardlme meqkflevtg enkdlraqiq sfgksmsslq dsrdqaneel
     2701 hvlkqkysad leeqkslvqn lqkqmvqlqe eqhstvrerd tvrseltelq katderglva
     2761 qieklnqklr akedellrla selegssnql ksfskamasl qnerdrllne ldktskmeev
     2821 kqqaegsast tpsevqslkk alsslqddrd rvvrelknlq qqyilvgves aentrlkaql
     2881 qeyqqdldke hrlleqlkqe sissqqelqq lrqektawek qnsslkeqyl mvitdkdkel
     2941 shlqrivqem rllhnkpqig geqnqtkips evlsgdisss ememkhlqaq lsdslkelhq
     3001 kelriqqlns klsqvfeekn alslqlrsss rsiceshqhy nevlnrclel ekqlqelqsa
     3061 dkgmdlfatd aapgapqekn epprgsytpe lqelqlrlse tehlhsstkq dlryleeqle
     3121 eererrlave ealsaaqdqi rrlqssewts slstsidmap dhehsllmep mdnhfsktrn
     3181 ilglrrllrs lfrsrthlpl laamyllavh vllflcftgh l
//
LOCUS       XP_053916207            3221 aa            linear   VRT 09-MAR-2023
DEFINITION  golgin subfamily B member 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053916207
VERSION     XP_053916207.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060232.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3221
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3221
                     /product="golgin subfamily B member 1 isoform X1"
                     /calculated_mol_wt=370038
     Region          <32..>264
                     /region_name="GumC"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; COG3206"
                     /db_xref="CDD:442439"
     Region          186..1011
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          753..>1516
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          1250..2122
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          1908..2739
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          <2427..3060
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..3221
                     /gene="GOLGB1"
                     /coded_by="XM_054060232.1:187..9852"
                     /db_xref="GeneID:104061432"
ORIGIN      
        1 mlsrlsglas tvlqelsgdd gdavtestaa vqalepeaes meeapedlle rlaqteklvv
       61 qlkdlirekd allqqkeavl keereaadak lmklklqaka klaslnkrie eltekgsplp
      121 aqalseeqac pkcqndqnts eghreeaeal keqlrereet vqdlkeqlaq akvnlkdaei
      181 khatqlsslq evireketll eeqahqhqae llkiaaqsdl evemqqnlrt lqrkleeqee
      241 allgrtqvve llqqelraae qqnqilrdqc qkmevdlssl rdvldaerre sqdlrekmel
      301 elaerkmfth rlqdevqcls eqleearraq televkykdl eqeqklevee knqqisclkv
      361 veqelqsrha alegendrlk qdverllvls aensatiqkl edelaqkpee fvycqnelrs
      421 qsvqdvelkk qdettspeet vdqeeqngts llptenlerq qteettrler vlreppqeav
      481 vvaenakqnk digpemksqd lqileapssc vdssstgvsg erlhseaqkp lddtsvlpea
      541 gtescqpgiv dylaaekqke lsvlllelke aqeevdflks qlrspssqts vgsqteeaai
      601 hlednsqirf lereeqkisg tqnelgggsl lreaeiqdig vlqekslqev pqrsivpcag
      661 emrevstadp eldtsrsqel lklqtqiael qiilqksees ykkelgekga eiqrlnqlae
      721 eyrrkieasd nafcvlteer dqllcqtkel stvtelkerv kqleenlals ekqrlsdsqs
      781 sllkeqiqsl knefkskenk iealqkdlde aqlqlsdqdm qlkdlrsqie kkecevldle
      841 qllrrntaer eeltqnlask gheaanlgql vaeqtrsikn lqqtllekdq qmteislsms
      901 ekmvllneek fslenelrsl keqtslllka qeekdkniet rdtslkceas eqqfeteaas
      961 kenevlvnql ellkkeneqi krklqaalvn rkellkkvsk lenelvrler epesetsvar
     1021 gaegeenvtr viskevsler qpseeyliqq lsekeselqs irkdlldkem teaqlqavie
     1081 emrrslqgkm divsgkdeiv gsqtigdkvt etnkspkdge eneqnssaaa nldenqklal
     1141 keristleqe keqlqkklqe alvsrkdtik kaqekdrhhr eqlkqqkddy nvlqeqfdkq
     1201 skekesiqaq lrqlqeqkgs tegilgnqag ldsscteaen ttnntvvqva gvseeevemk
     1261 leklqmekek ledivshmqn elackselvf hlqehvaqlf leieglkrss dqaeakaasl
     1321 qteleknlar isgesaledl ktlmdqkdee ikflnlqlge ksealanvqa rliekedsir
     1381 slrgqletqa qaheeqskrl qtellevqek qddsaeaake khqmqrklqa alisrkealk
     1441 eskslkeela gakttiesls vrltdmenqi cghvkerdal ieksarltde qekliaevdk
     1501 vltenqnldg ccknlkitld gvllekekle keveslksfq aaessewhek ygdlqkeyet
     1561 llqsyenvsn eaeriqrvle tvrqekqdvf mklksveakk eetdkqlqea geeidgmkek
     1621 mrkfakskqq kileleeene klraemhfad gelrktgdvi tesslkedle ssrrdcqsls
     1681 tqleavmaek grlnqeitdl kchlqvtese lkesrglldk yvaqktteka anqavgtppp
     1741 vertenqmdi sfgpeappae leqkafdgss pcegldtyiq qieelteria elednrrase
     1801 qqlgdirmcv ealasekkal etqmeeklre lnvlrdtvak meqtvqktkd dlvrmtelkd
     1861 tleaekddle erlmnqlael ngsignyqqd atdfqmeneq lkqelqslqr vvheleeekr
     1921 qmvmekskas sekqkefvek lkcnwrgdts thvkelqell kqkqqeikql qkeciksqek
     1981 nsslertika lefvqsesqk eveaakeala kavedtkkaq aelalckvtl ddtqseaarv
     2041 vaesikvkee lqankenivv qmkkkdedfe rrlerereeh skeiksieer laalqrekds
     2101 veaavgdlqd llktkdqeak qlegnlnktl aqlaaftrsm sslqddrdrv idesktwekk
     2161 ftetiqkkee eirlkeetcv vlkdqmkhma irveelqahi srlehnkkdw eseskkelqh
     2221 hqktcemlqe ekkelliqle esqklssqsq neqqklesei sslkhqladl qrsftncelv
     2281 redlgslvkq qettlqnfkf scqqlevdlq askdltdklh eeisakdqki msllsakeea
     2341 vmvalsdlqq qhaeemkele hrlskeeedk kaleneknky idkldhltek mktsreeskq
     2401 qkaqldsftk smsslqddrd rilrdykqle erhlviilek dqliqeaaae nnklkeeirs
     2461 fhsrmddlns enaklnaelv ryredlnqvi sikdsqqkql lktqlqriqt lekekaiiet
     2521 qlkesertqd elrkgmealr edkvsmtqei etltsslsrv qnemtalleg gpivdyqaql
     2581 kareeeaqel sqklslsqqr iteleeellc vqkdaskkvg eaedrlrkel khlhhdagim
     2641 rnetetaeer vaelardlme meqkflevtg enkdlraqiq sfgksmsslq dsrdqaneel
     2701 hvlkqkysad leeqkslvqn lqkqmvqlqe eqhstvrerd tvrseltelq katderglva
     2761 qieklnqklr akedellrla selegssnql ksfskamasl qnerdrllne ldktskmeev
     2821 kqqaegsast tpsevqslkk alsslqddrd rvvrelknlq qqyilvgves aentrlkaql
     2881 qeyqqdldke hrlleqlkqe sissqqelqq lrqektawek qnsslkeqyl mvitdkdkel
     2941 shlqrivqem rllhnkpqig geqnqtkips evlsgdisss ememkhlqaq lsdslkelhq
     3001 kelriqqlns klsqvfeekn alslqlrsss rsiceshqhy nevlnrclel ekqlqelqsa
     3061 dkgmdlfatd aapgapqekn epprgsytpe lqelqlrlse tehlhsstkq dlryleeqle
     3121 eererrlave ealsaaqdqi rrlqssewts slstsidmap dhehsllmep mdnhfsktrn
     3181 ilglrrllrs lfrsrthlpl laamyllavh vllflcftgh l
//
LOCUS       XP_053916211            3219 aa            linear   VRT 09-MAR-2023
DEFINITION  golgin subfamily B member 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053916211
VERSION     XP_053916211.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060236.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3219
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3219
                     /product="golgin subfamily B member 1 isoform X2"
                     /calculated_mol_wt=369811
     Region          <26..>472
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          661..>820
                     /region_name="PRK09039"
                     /note="peptidoglycan -binding protein"
                     /db_xref="CDD:181619"
     Region          751..>1514
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          1248..2120
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          1906..2737
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          <2425..3058
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..3219
                     /gene="GOLGB1"
                     /coded_by="XM_054060236.1:200..9859"
                     /db_xref="GeneID:104061432"
ORIGIN      
        1 mlsrlsglas tvlqelsgdd gdavtestaa alepeaesme eapedllerl aqteklvvql
       61 kdlirekdal lqqkeavlke ereaadaklm klklqakakl aslnkrieel tekgsplpaq
      121 alseeqacpk cqndqntseg hreeaealke qlrereetvq dlkeqlaqak vnlkdaeikh
      181 atqlsslqev ireketllee qahqhqaell kiaaqsdlev emqqnlrtlq rkleeqeeal
      241 lgrtqvvell qqelraaeqq nqilrdqcqk mevdlsslrd vldaerresq dlrekmelel
      301 aerkmfthrl qdevqclseq leearraqte levkykdleq eqkleveekn qqisclkvve
      361 qelqsrhaal egendrlkqd verllvlsae nsatiqkled elaqkpeefv ycqnelrsqs
      421 vqdvelkkqd ettspeetvd qeeqngtsll ptenlerqqt eettrlervl reppqeavvv
      481 aenakqnkdi gpemksqdlq ileapsscvd ssstgvsger lhseaqkpld dtsvlpeagt
      541 escqpgivdy laaekqkels vlllelkeaq eevdflksql rspssqtsvg sqteeaaihl
      601 ednsqirfle reeqkisgtq nelgggsllr eaeiqdigvl qekslqevpq rsivpcagem
      661 revstadpel dtsrsqellk lqtqiaelqi ilqkseesyk kelgekgaei qrlnqlaeey
      721 rrkieasdna fcvlteerdq llcqtkelst vtelkervkq leenlalsek qrlsdsqssl
      781 lkeqiqslkn efkskenkie alqkdldeaq lqlsdqdmql kdlrsqiekk ecevldleql
      841 lrrntaeree ltqnlaskgh eaanlgqlva eqtrsiknlq qtllekdqqm teislsmsek
      901 mvllneekfs lenelrslke qtslllkaqe ekdknietrd tslkceaseq qfeteaaske
      961 nevlvnqlel lkkeneqikr klqaalvnrk ellkkvskle nelvrlerep esetsvarga
     1021 egeenvtrvi skevslerqp seeyliqqls ekeselqsir kdlldkemte aqlqavieem
     1081 rrslqgkmdi vsgkdeivgs qtigdkvtet nkspkdgeen eqnssaaanl denqklalke
     1141 ristleqeke qlqkklqeal vsrkdtikka qekdrhhreq lkqqkddynv lqeqfdkqsk
     1201 ekesiqaqlr qlqeqkgste gilgnqagld sscteaentt nntvvqvagv seeevemkle
     1261 klqmekekle divshmqnel ackselvfhl qehvaqlfle ieglkrssdq aeakaaslqt
     1321 eleknlaris gesaledlkt lmdqkdeeik flnlqlgeks ealanvqarl iekedsirsl
     1381 rgqletqaqa heeqskrlqt ellevqekqd dsaeaakekh qmqrklqaal isrkealkes
     1441 kslkeelaga kttieslsvr ltdmenqicg hvkerdalie ksarltdeqe kliaevdkvl
     1501 tenqnldgcc knlkitldgv llekekleke veslksfqaa essewhekyg dlqkeyetll
     1561 qsyenvsnea eriqrvletv rqekqdvfmk lksveakkee tdkqlqeage eidgmkekmr
     1621 kfakskqqki leleeenekl raemhfadge lrktgdvite sslkedless rrdcqslstq
     1681 leavmaekgr lnqeitdlkc hlqvteselk esrglldkyv aqkttekaan qavgtpppve
     1741 rtenqmdisf gpeappaele qkafdgsspc egldtyiqqi eelteriael ednrraseqq
     1801 lgdirmcvea lasekkalet qmeeklreln vlrdtvakme qtvqktkddl vrmtelkdtl
     1861 eaekddleer lmnqlaelng signyqqdat dfqmeneqlk qelqslqrvv heleeekrqm
     1921 vmekskasse kqkefveklk cnwrgdtsth vkelqellkq kqqeikqlqk eciksqekns
     1981 slertikale fvqsesqkev eaakealaka vedtkkaqae lalckvtldd tqseaarvva
     2041 esikvkeelq ankenivvqm kkkdedferr lerereehsk eiksieerla alqrekdsve
     2101 aavgdlqdll ktkdqeakql egnlnktlaq laaftrsmss lqddrdrvid esktwekkft
     2161 etiqkkeeei rlkeetcvvl kdqmkhmair veelqahisr lehnkkdwes eskkelqhhq
     2221 ktcemlqeek kelliqlees qklssqsqne qqkleseiss lkhqladlqr sftncelvre
     2281 dlgslvkqqe ttlqnfkfsc qqlevdlqas kdltdklhee isakdqkims llsakeeavm
     2341 valsdlqqqh aeemkelehr lskeeedkka leneknkyid kldhltekmk tsreeskqqk
     2401 aqldsftksm sslqddrdri lrdykqleer hlviilekdq liqeaaaenn klkeeirsfh
     2461 srmddlnsen aklnaelvry redlnqvisi kdsqqkqllk tqlqriqtle kekaiietql
     2521 kesertqdel rkgmealred kvsmtqeiet ltsslsrvqn emtalleggp ivdyqaqlka
     2581 reeeaqelsq klslsqqrit eleeellcvq kdaskkvgea edrlrkelkh lhhdagimrn
     2641 etetaeerva elardlmeme qkflevtgen kdlraqiqsf gksmsslqds rdqaneelhv
     2701 lkqkysadle eqkslvqnlq kqmvqlqeeq hstvrerdtv rseltelqka tderglvaqi
     2761 eklnqklrak edellrlase legssnqlks fskamaslqn erdrllneld ktskmeevkq
     2821 qaegsasttp sevqslkkal sslqddrdrv vrelknlqqq yilvgvesae ntrlkaqlqe
     2881 yqqdldkehr lleqlkqesi ssqqelqqlr qektawekqn sslkeqylmv itdkdkelsh
     2941 lqrivqemrl lhnkpqigge qnqtkipsev lsgdisssem emkhlqaqls dslkelhqke
     3001 lriqqlnskl sqvfeeknal slqlrsssrs iceshqhyne vlnrclelek qlqelqsadk
     3061 gmdlfatdaa pgapqeknep prgsytpelq elqlrlsete hlhsstkqdl ryleeqleee
     3121 rerrlaveea lsaaqdqirr lqssewtssl stsidmapdh ehsllmepmd nhfsktrnil
     3181 glrrllrslf rsrthlplla amyllavhvl lflcftghl
//
LOCUS       XP_053916220             522 aa            linear   VRT 09-MAR-2023
DEFINITION  hematopoietic lineage cell-specific protein isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053916220
VERSION     XP_053916220.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060245.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..522
                     /product="hematopoietic lineage cell-specific protein
                     isoform X1"
                     /calculated_mol_wt=57975
     Region          82..117
                     /region_name="HS1_rep"
                     /note="Repeat in HS1/Cortactin; pfam02218"
                     /db_xref="CDD:460497"
     Region          119..154
                     /region_name="HS1_rep"
                     /note="Repeat in HS1/Cortactin; pfam02218"
                     /db_xref="CDD:460497"
     Region          156..191
                     /region_name="HS1_rep"
                     /note="Repeat in HS1/Cortactin; pfam02218"
                     /db_xref="CDD:460497"
     Region          193..228
                     /region_name="HS1_rep"
                     /note="Repeat in HS1/Cortactin; pfam02218"
                     /db_xref="CDD:460497"
     Region          230..>249
                     /region_name="HS1_rep"
                     /note="Repeat in HS1/Cortactin; pfam02218"
                     /db_xref="CDD:460497"
     Region          <237..>321
                     /region_name="PHA00327"
                     /note="minor capsid protein"
                     /db_xref="CDD:164789"
     Region          468..521
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(473,475,478,482,500..501,514,516..517)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:213006"
     CDS             1..522
                     /gene="LOC104061431"
                     /coded_by="XM_054060245.1:149..1717"
                     /db_xref="GeneID:104061431"
ORIGIN      
        1 mwkavvghev svkveaqgdd wdtdpdfvnd isekeqrwga ktiegsgrae hinihqlrsk
       61 vseehevikk keletgpkas ygyggkfgte rdrmdksavg heyvaevgkh ssqtdaakgf
      121 ggkygvqrdr adksalgfey kgevekhssq kdyskgfggr ygvekdkvdk aavgfdyksq
      181 aekhdsqkdy svgfggkfgv qrdrqdksal gwdhqeevqp hasqkdyskg fggrygvqkd
      241 rvdksaagfn emaaptssye ktrpveagas sgtsslrsrf enmaklaeee srrqaeeerv
      301 rrqaresqpa rwkqeipqrd kdhieaappt vparvpgnad rerpkswglq eteredeetp
      361 palpsrladl geelckipsq depnysegsd vgadyeelle psdycdstsg galyeelpap
      421 lenpdviydy ggdagedyed ilpgklsqsq phlgemdnvy dvespgtcav alydyqgegd
      481 deisfdpddt ithiemvdeg wwrgqcrgkv glfpanyvkl lq
//
LOCUS       XP_053916231             522 aa            linear   VRT 09-MAR-2023
DEFINITION  hematopoietic lineage cell-specific protein isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053916231
VERSION     XP_053916231.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060256.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..522
                     /product="hematopoietic lineage cell-specific protein
                     isoform X1"
                     /calculated_mol_wt=57975
     Region          82..117
                     /region_name="HS1_rep"
                     /note="Repeat in HS1/Cortactin; pfam02218"
                     /db_xref="CDD:460497"
     Region          119..154
                     /region_name="HS1_rep"
                     /note="Repeat in HS1/Cortactin; pfam02218"
                     /db_xref="CDD:460497"
     Region          156..191
                     /region_name="HS1_rep"
                     /note="Repeat in HS1/Cortactin; pfam02218"
                     /db_xref="CDD:460497"
     Region          193..228
                     /region_name="HS1_rep"
                     /note="Repeat in HS1/Cortactin; pfam02218"
                     /db_xref="CDD:460497"
     Region          230..>249
                     /region_name="HS1_rep"
                     /note="Repeat in HS1/Cortactin; pfam02218"
                     /db_xref="CDD:460497"
     Region          <237..>321
                     /region_name="PHA00327"
                     /note="minor capsid protein"
                     /db_xref="CDD:164789"
     Region          468..521
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(473,475,478,482,500..501,514,516..517)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:213006"
     CDS             1..522
                     /gene="LOC104061431"
                     /coded_by="XM_054060256.1:157..1725"
                     /db_xref="GeneID:104061431"
ORIGIN      
        1 mwkavvghev svkveaqgdd wdtdpdfvnd isekeqrwga ktiegsgrae hinihqlrsk
       61 vseehevikk keletgpkas ygyggkfgte rdrmdksavg heyvaevgkh ssqtdaakgf
      121 ggkygvqrdr adksalgfey kgevekhssq kdyskgfggr ygvekdkvdk aavgfdyksq
      181 aekhdsqkdy svgfggkfgv qrdrqdksal gwdhqeevqp hasqkdyskg fggrygvqkd
      241 rvdksaagfn emaaptssye ktrpveagas sgtsslrsrf enmaklaeee srrqaeeerv
      301 rrqaresqpa rwkqeipqrd kdhieaappt vparvpgnad rerpkswglq eteredeetp
      361 palpsrladl geelckipsq depnysegsd vgadyeelle psdycdstsg galyeelpap
      421 lenpdviydy ggdagedyed ilpgklsqsq phlgemdnvy dvespgtcav alydyqgegd
      481 deisfdpddt ithiemvdeg wwrgqcrgkv glfpanyvkl lq
//
LOCUS       XP_053916242             521 aa            linear   VRT 09-MAR-2023
DEFINITION  hematopoietic lineage cell-specific protein isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053916242
VERSION     XP_053916242.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060267.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..521
                     /product="hematopoietic lineage cell-specific protein
                     isoform X2"
                     /calculated_mol_wt=57847
     Region          82..117
                     /region_name="HS1_rep"
                     /note="Repeat in HS1/Cortactin; pfam02218"
                     /db_xref="CDD:460497"
     Region          119..154
                     /region_name="HS1_rep"
                     /note="Repeat in HS1/Cortactin; pfam02218"
                     /db_xref="CDD:460497"
     Region          156..191
                     /region_name="HS1_rep"
                     /note="Repeat in HS1/Cortactin; pfam02218"
                     /db_xref="CDD:460497"
     Region          193..228
                     /region_name="HS1_rep"
                     /note="Repeat in HS1/Cortactin; pfam02218"
                     /db_xref="CDD:460497"
     Region          230..>249
                     /region_name="HS1_rep"
                     /note="Repeat in HS1/Cortactin; pfam02218"
                     /db_xref="CDD:460497"
     Region          467..520
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(472,474,477,481,499..500,513,515..516)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:213006"
     CDS             1..521
                     /gene="LOC104061431"
                     /coded_by="XM_054060267.1:150..1715"
                     /db_xref="GeneID:104061431"
ORIGIN      
        1 mwkavvghev svkveaqgdd wdtdpdfvnd isekeqrwga ktiegsgrae hinihqlrsk
       61 vseehevikk keletgpkas ygyggkfgte rdrmdksavg heyvaevgkh ssqtdaakgf
      121 ggkygvqrdr adksalgfey kgevekhssq kdyskgfggr ygvekdkvdk aavgfdyksq
      181 aekhdsqkdy svgfggkfgv qrdrqdksal gwdhqeevqp hasqkdyskg fggrygvqkd
      241 rvdksaagfn emaaptssye ktrpveagas sgtsslrsrf enmaklaeee srrqaeeerv
      301 rrqaresqpa rwkeipqrdk dhieaapptv parvpgnadr erpkswglqe teredeetpp
      361 alpsrladlg eelckipsqd epnysegsdv gadyeellep sdycdstsgg alyeelpapl
      421 enpdviydyg gdagedyedi lpgklsqsqp hlgemdnvyd vespgtcava lydyqgegdd
      481 eisfdpddti thiemvdegw wrgqcrgkvg lfpanyvkll q
//
LOCUS       XP_053916250             522 aa            linear   VRT 09-MAR-2023
DEFINITION  hematopoietic lineage cell-specific protein isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053916250
VERSION     XP_053916250.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060275.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..522
                     /product="hematopoietic lineage cell-specific protein
                     isoform X1"
                     /calculated_mol_wt=57975
     Region          82..117
                     /region_name="HS1_rep"
                     /note="Repeat in HS1/Cortactin; pfam02218"
                     /db_xref="CDD:460497"
     Region          119..154
                     /region_name="HS1_rep"
                     /note="Repeat in HS1/Cortactin; pfam02218"
                     /db_xref="CDD:460497"
     Region          156..191
                     /region_name="HS1_rep"
                     /note="Repeat in HS1/Cortactin; pfam02218"
                     /db_xref="CDD:460497"
     Region          193..228
                     /region_name="HS1_rep"
                     /note="Repeat in HS1/Cortactin; pfam02218"
                     /db_xref="CDD:460497"
     Region          230..>249
                     /region_name="HS1_rep"
                     /note="Repeat in HS1/Cortactin; pfam02218"
                     /db_xref="CDD:460497"
     Region          <237..>321
                     /region_name="PHA00327"
                     /note="minor capsid protein"
                     /db_xref="CDD:164789"
     Region          468..521
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(473,475,478,482,500..501,514,516..517)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:213006"
     CDS             1..522
                     /gene="LOC104061431"
                     /coded_by="XM_054060275.1:136..1704"
                     /db_xref="GeneID:104061431"
ORIGIN      
        1 mwkavvghev svkveaqgdd wdtdpdfvnd isekeqrwga ktiegsgrae hinihqlrsk
       61 vseehevikk keletgpkas ygyggkfgte rdrmdksavg heyvaevgkh ssqtdaakgf
      121 ggkygvqrdr adksalgfey kgevekhssq kdyskgfggr ygvekdkvdk aavgfdyksq
      181 aekhdsqkdy svgfggkfgv qrdrqdksal gwdhqeevqp hasqkdyskg fggrygvqkd
      241 rvdksaagfn emaaptssye ktrpveagas sgtsslrsrf enmaklaeee srrqaeeerv
      301 rrqaresqpa rwkqeipqrd kdhieaappt vparvpgnad rerpkswglq eteredeetp
      361 palpsrladl geelckipsq depnysegsd vgadyeelle psdycdstsg galyeelpap
      421 lenpdviydy ggdagedyed ilpgklsqsq phlgemdnvy dvespgtcav alydyqgegd
      481 deisfdpddt ithiemvdeg wwrgqcrgkv glfpanyvkl lq
//
LOCUS       XP_053916256            3069 aa            linear   VRT 09-MAR-2023
DEFINITION  ranBP2-like and GRIP domain-containing protein 4 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053916256
VERSION     XP_053916256.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060281.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3069
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3069
                     /product="ranBP2-like and GRIP domain-containing protein 4
                     isoform X1"
                     /calculated_mol_wt=342180
     Region          <34..223
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          60..90
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          1189..1305
                     /region_name="RanBD1_RanBP2-like"
                     /note="Ran-binding protein 2, Ran binding domain repeat 1;
                     cd14684"
                     /db_xref="CDD:270203"
     Site            order(1203,1205..1207,1212..1217,1234,1236,1238..1239,
                     1241,1243..1245,1248,1250,1254,1258,1268,1270,1283,1287)
                     /site_type="other"
                     /note="RAN binding site [polypeptide binding]"
                     /db_xref="CDD:270203"
     Region          1399..1428
                     /region_name="zf-RanBP"
                     /note="Zn-finger in Ran binding protein and others;
                     pfam00641"
                     /db_xref="CDD:395516"
     Region          1403..1422
                     /region_name="RanBP2-type Zn finger"
                     /note="RanBP2-type Zn finger [structural motif]"
                     /db_xref="CDD:275375"
     Region          1462..1490
                     /region_name="zf-RanBP"
                     /note="Zn-finger in Ran binding protein and others;
                     pfam00641"
                     /db_xref="CDD:395516"
     Region          1466..1485
                     /region_name="RanBP2-type Zn finger"
                     /note="RanBP2-type Zn finger [structural motif]"
                     /db_xref="CDD:275375"
     Region          1519..1547
                     /region_name="zf-RanBP"
                     /note="Zn-finger in Ran binding protein and others;
                     pfam00641"
                     /db_xref="CDD:395516"
     Region          1523..1542
                     /region_name="RanBP2-type Zn finger"
                     /note="RanBP2-type Zn finger [structural motif]"
                     /db_xref="CDD:275375"
     Region          1587..1615
                     /region_name="zf-RanBP"
                     /note="Zn-finger in Ran binding protein and others;
                     pfam00641"
                     /db_xref="CDD:395516"
     Region          1591..1610
                     /region_name="RanBP2-type Zn finger"
                     /note="RanBP2-type Zn finger [structural motif]"
                     /db_xref="CDD:275375"
     Region          1847..1963
                     /region_name="RanBD2_RanBP2-like"
                     /note="Ran-binding protein 2, Ran binding domain repeat 2;
                     cd13177"
                     /db_xref="CDD:269998"
     Site            order(1861,1863..1865,1870..1875,1892,1894,1896..1897,
                     1899,1901..1903,1906,1908,1912,1916,1926,1928,1941,1945)
                     /site_type="other"
                     /note="putative RAN binding site [polypeptide binding]"
                     /db_xref="CDD:269998"
     Region          2142..2258
                     /region_name="RanBD3_RanBP2-like"
                     /note="Ran-binding protein 2, Ran binding domain repeat 3;
                     cd14685"
                     /db_xref="CDD:270204"
     Site            order(2156,2158..2160,2165..2170,2187,2189,2191..2192,
                     2194,2196..2198,2201,2203,2207,2211,2221,2223,2236,2240)
                     /site_type="other"
                     /note="putative RAN binding site [polypeptide binding]"
                     /db_xref="CDD:270204"
     Region          2471..2532
                     /region_name="IR1-M"
                     /note="Nup358/RanBP2 E3 ligase domain; pfam12185"
                     /db_xref="CDD:463488"
     Region          2556..2603
                     /region_name="IR1-M"
                     /note="Nup358/RanBP2 E3 ligase domain; pfam12185"
                     /db_xref="CDD:463488"
     Region          2770..2886
                     /region_name="PH-like"
                     /note="Pleckstrin homology-like domain; cl17171"
                     /db_xref="CDD:473070"
     Region          2909..3067
                     /region_name="cyclophilin_ABH_like"
                     /note="Cyclophilin A, B and H-like cyclophilin-type
                     peptidylprolyl cis- trans isomerase (PPIase) domain. This
                     family represents the archetypal cystolic cyclophilin
                     similar to human cyclophilins A, B and H. PPIase is an
                     enzyme which accelerates protein folding...; cd01926"
                     /db_xref="CDD:238907"
     Site            order(2959..2960,2965,3016,3018,3026)
                     /site_type="active"
                     /db_xref="CDD:238907"
     CDS             1..3069
                     /gene="RGPD4"
                     /coded_by="XM_054060281.1:133..9342"
                     /db_xref="GeneID:104056679"
ORIGIN      
        1 mmrrtkpevd ryvafvqtml pspreksikg flfaklyfei keyelakryv saylniqerd
       61 pkahrflgri yetednieka vgcykrsvel nptqkdlvlk iaellcsndt tdgrakywve
      121 raaklfpgsp svyrlkekll dckgedgqne lfdliqaelc arpddvylnv rlvalyrsqn
      181 rlrdavlhcq eaekkiplqs svewcscvve tyeaylesaq dlesdknnwr aikkdhllay
      241 ssfvkmklss rdvqesreal esfdrllqsm kphvngadel chtfvemkgq lymhagtlll
      301 kmaqhseaqw rvvselaalc ylisfqvpkp kskvikgdqt gqdmlemlac drksqsghml
      361 lnlshgkqdf fkeivesfan ksgsftlfds lfesgasrer sfigtddigs vsaqapvqme
      421 lnkydigavr mhngslqhlv wlglqwnsms vlppmrkwlk qlfhlpqets rretdapesi
      481 clldlevfll gvvftsnlql qekfnshcst hqpqflpllv ckqlytekqg swwdavctli
      541 qrkatlgtaa klrlivqhgi stlrtlekhg lqpaliihwa kslqktgisl nsfydqreyi
      601 grsvcywkkv lpmleaikkk rsipeptdpl fkhfhsvdiq vlqvaayeee ahiafamlda
      661 vdgktddall afeaiknvis ywnlavifqr kaeeiekdam lleeqeehkt yllkskhylm
      721 miieeslsdi svieklpvsi etvkemldtv vqelgendde rspafrngvs rvvdsemkhs
      781 tpspttfsls paksykfspk tpphwaedhr smlqmicqqv ealknemqem klnnsnsnas
      841 shrwpaesyg tdtmsegyqr aqnlheaplt vattgpsvyy sqspaynsqy llrtaatsvt
      901 ptkapvygmn rlapqqhiya yqqpmhtppl qntsacmfsq eiygtplrfd spatglispr
      961 ggddyynysv pqastdpplp gpgyftkpsv ppptlkpads kvveftkpkf gqpgtaegsk
     1021 tslptpaqss qpttfkfntn fksndgdftf sslqvptqpg naafnnsesl lglltsdkrl
     1081 qddryveqka vndhtnsqrn vfnfgnkhip gisfresvgq nahkslsfek sdmfsvqeps
     1141 kpvfttsnsd lanrsheteg gsthggdedd dgphfdpvvp lpdkievktg eedeeeffcn
     1201 raklfrfdae skewkergig nvkilkhkvs gkfrllmrrd qvlkicanhy intdmkltpn
     1261 agsdksfvwh aldyadelpk peqlairfkt peeamlfksk feeaqnilkt lgstvdtsvt
     1321 qstetgrett nqdikepsrs isgtlnfgfq flkdevsses dskgsltats tasgptpfsf
     1381 gkeapqtsss ggfaqhllkk dqwvckvclv pneasakncv scqspnldts emhstqstes
     1441 satskassnt vqdkfgsafa kkegqwdcsv csvrnepsas rcadcqnpnk tntavsfkfd
     1501 qaiapkavqk dlatafpkke gqwncavclv qneakdvncr scqnpnsksq pnvpvptvqa
     1561 slapkfgtia daskplkngf eglfakkegq wdcttclvrn ersspacvac qtpnphdkaa
     1621 gdasstpafg lksklsepag gqlgtgfkcd flekgfkfgt aeqgktpsft fqvpsdteik
     1681 pakegfsfsm pvpaggfkfg iqessknttk kdepskectt gflkssdekd kketlsesgi
     1741 pfqfqetsnk ekgdfvfgqn sstftfaela krtpgesfqf gkkdpnfkgf sgageklfss
     1801 qvskedpkpn tsadlsekdd dvyktedsdd ihfepivqmp ekvepftgee dekvlysqrv
     1861 klfrfdpets qwkergvgnl kilknevngk vrilmrreqv lkvcanhwit ttmnlkqlsg
     1921 sdkawmwman dfsdgdakle hlaakfktpe qaeefkqkfe ecqrllldip lqtphklvdt
     1981 grtaqliqka eemkcglkdl ktfltddktk lseeenvnsv casstsdvvi kphaestgpt
     2041 lewdnydlre ealddsvsss vyaspltssp vrknlfrfge sttgfsfsfk salspskspa
     2101 kqnqsrtsvg tdedsdvtqe eerdgqyfep vvplpdlvev tsgeeneqvv fshraklyry
     2161 dkdanqwker gigdikilqn ydnkqvrivm rrdqvlklca nhritpdmnm qqmkgsdraw
     2221 vwtacdfadg erkvellavr fklqdvadsf kqifdeakha qeretlitpl ssrantpkes
     2281 pcgknavavl eettrertdl shgdansdvt vevaevsnts eiptktvvsp pkfvfgsesv
     2341 ksifsneksk tftfgntsat gslfgfsfnp pkksedhipt sqnttqkele vseppkssaa
     2401 iqkpldsksd nlptstqegp snfsfrilek gfnfslfksn pmafwtstss lqpdskaekp
     2461 amspddlpsd evvivyeltp tpeqralagf lklpptffcy knkpgyvsde dddedyetav
     2521 knlngrlyps dseekkksqd pvkavtegre sgnegecvta qeknpdpeee gkaetpqdls
     2581 tsvcgassdt eddspkdvqa evkteetked eatsstvlvc aseqeaptps tdevtasvqs
     2641 apsseepesp tetvpvsesl sgaddtpvdl stkksdldcs esteenrvit fgfgssagls
     2701 fadlasknsg dfafgskdqn fkwantgaav fgetarkade eeggsddevv hsddihfepi
     2761 vslpevevks geedeeilfk eraklyrwdr datqwkergv geikilfhtq kkyyrvlmrr
     2821 dqvlkvcanh vitkemnlvp sdtsnnaliw tatdyadgev kveqlavrfk sqemansfkr
     2881 rfeecqlsls elqkghlsla aglskdtnpv vyfevsadde plghitmelf snivprtaen
     2941 fralctgekg fgfknssfhr ivpdfvcqgg ditnhdgtgg rsiygtafed enfevkhtgp
     3001 gllsmankgr dtntsqffit lkkaehldfk hvvfgfvkdg mdvvkkmesf gspkglvngr
     3061 ivitdcgqi
//
LOCUS       XP_053916264            3043 aa            linear   VRT 09-MAR-2023
DEFINITION  ranBP2-like and GRIP domain-containing protein 4 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053916264
VERSION     XP_053916264.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060289.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3043
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3043
                     /product="ranBP2-like and GRIP domain-containing protein 4
                     isoform X2"
                     /calculated_mol_wt=339273
     Region          <34..223
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          60..90
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          1189..1305
                     /region_name="RanBD1_RanBP2-like"
                     /note="Ran-binding protein 2, Ran binding domain repeat 1;
                     cd14684"
                     /db_xref="CDD:270203"
     Site            order(1203,1205..1207,1212..1217,1234,1236,1238..1239,
                     1241,1243..1245,1248,1250,1254,1258,1268,1270,1283,1287)
                     /site_type="other"
                     /note="RAN binding site [polypeptide binding]"
                     /db_xref="CDD:270203"
     Region          1399..1428
                     /region_name="zf-RanBP"
                     /note="Zn-finger in Ran binding protein and others;
                     pfam00641"
                     /db_xref="CDD:395516"
     Region          1403..1422
                     /region_name="RanBP2-type Zn finger"
                     /note="RanBP2-type Zn finger [structural motif]"
                     /db_xref="CDD:275375"
     Region          1462..1490
                     /region_name="zf-RanBP"
                     /note="Zn-finger in Ran binding protein and others;
                     pfam00641"
                     /db_xref="CDD:395516"
     Region          1466..1485
                     /region_name="RanBP2-type Zn finger"
                     /note="RanBP2-type Zn finger [structural motif]"
                     /db_xref="CDD:275375"
     Region          1519..1547
                     /region_name="zf-RanBP"
                     /note="Zn-finger in Ran binding protein and others;
                     pfam00641"
                     /db_xref="CDD:395516"
     Region          1523..1542
                     /region_name="RanBP2-type Zn finger"
                     /note="RanBP2-type Zn finger [structural motif]"
                     /db_xref="CDD:275375"
     Region          1587..1615
                     /region_name="zf-RanBP"
                     /note="Zn-finger in Ran binding protein and others;
                     pfam00641"
                     /db_xref="CDD:395516"
     Region          1591..1610
                     /region_name="RanBP2-type Zn finger"
                     /note="RanBP2-type Zn finger [structural motif]"
                     /db_xref="CDD:275375"
     Region          1847..1963
                     /region_name="RanBD2_RanBP2-like"
                     /note="Ran-binding protein 2, Ran binding domain repeat 2;
                     cd13177"
                     /db_xref="CDD:269998"
     Site            order(1861,1863..1865,1870..1875,1892,1894,1896..1897,
                     1899,1901..1903,1906,1908,1912,1916,1926,1928,1941,1945)
                     /site_type="other"
                     /note="putative RAN binding site [polypeptide binding]"
                     /db_xref="CDD:269998"
     Region          2142..2258
                     /region_name="RanBD3_RanBP2-like"
                     /note="Ran-binding protein 2, Ran binding domain repeat 3;
                     cd14685"
                     /db_xref="CDD:270204"
     Site            order(2156,2158..2160,2165..2170,2187,2189,2191..2192,
                     2194,2196..2198,2201,2203,2207,2211,2221,2223,2236,2240)
                     /site_type="other"
                     /note="putative RAN binding site [polypeptide binding]"
                     /db_xref="CDD:270204"
     Region          2445..2506
                     /region_name="IR1-M"
                     /note="Nup358/RanBP2 E3 ligase domain; pfam12185"
                     /db_xref="CDD:463488"
     Region          2530..2577
                     /region_name="IR1-M"
                     /note="Nup358/RanBP2 E3 ligase domain; pfam12185"
                     /db_xref="CDD:463488"
     Region          2744..2860
                     /region_name="PH-like"
                     /note="Pleckstrin homology-like domain; cl17171"
                     /db_xref="CDD:473070"
     Region          2883..3041
                     /region_name="cyclophilin_ABH_like"
                     /note="Cyclophilin A, B and H-like cyclophilin-type
                     peptidylprolyl cis- trans isomerase (PPIase) domain. This
                     family represents the archetypal cystolic cyclophilin
                     similar to human cyclophilins A, B and H. PPIase is an
                     enzyme which accelerates protein folding...; cd01926"
                     /db_xref="CDD:238907"
     Site            order(2933..2934,2939,2990,2992,3000)
                     /site_type="active"
                     /db_xref="CDD:238907"
     CDS             1..3043
                     /gene="RGPD4"
                     /coded_by="XM_054060289.1:132..9263"
                     /db_xref="GeneID:104056679"
ORIGIN      
        1 mmrrtkpevd ryvafvqtml pspreksikg flfaklyfei keyelakryv saylniqerd
       61 pkahrflgri yetednieka vgcykrsvel nptqkdlvlk iaellcsndt tdgrakywve
      121 raaklfpgsp svyrlkekll dckgedgqne lfdliqaelc arpddvylnv rlvalyrsqn
      181 rlrdavlhcq eaekkiplqs svewcscvve tyeaylesaq dlesdknnwr aikkdhllay
      241 ssfvkmklss rdvqesreal esfdrllqsm kphvngadel chtfvemkgq lymhagtlll
      301 kmaqhseaqw rvvselaalc ylisfqvpkp kskvikgdqt gqdmlemlac drksqsghml
      361 lnlshgkqdf fkeivesfan ksgsftlfds lfesgasrer sfigtddigs vsaqapvqme
      421 lnkydigavr mhngslqhlv wlglqwnsms vlppmrkwlk qlfhlpqets rretdapesi
      481 clldlevfll gvvftsnlql qekfnshcst hqpqflpllv ckqlytekqg swwdavctli
      541 qrkatlgtaa klrlivqhgi stlrtlekhg lqpaliihwa kslqktgisl nsfydqreyi
      601 grsvcywkkv lpmleaikkk rsipeptdpl fkhfhsvdiq vlqvaayeee ahiafamlda
      661 vdgktddall afeaiknvis ywnlavifqr kaeeiekdam lleeqeehkt yllkskhylm
      721 miieeslsdi svieklpvsi etvkemldtv vqelgendde rspafrngvs rvvdsemkhs
      781 tpspttfsls paksykfspk tpphwaedhr smlqmicqqv ealknemqem klnnsnsnas
      841 shrwpaesyg tdtmsegyqr aqnlheaplt vattgpsvyy sqspaynsqy llrtaatsvt
      901 ptkapvygmn rlapqqhiya yqqpmhtppl qntsacmfsq eiygtplrfd spatglispr
      961 ggddyynysv pqastdpplp gpgyftkpsv ppptlkpads kvveftkpkf gqpgtaegsk
     1021 tslptpaqss qpttfkfntn fksndgdftf sslqvptqpg naafnnsesl lglltsdkrl
     1081 qddryveqka vndhtnsqrn vfnfgnkhip gisfresvgq nahkslsfek sdmfsvqeps
     1141 kpvfttsnsd lanrsheteg gsthggdedd dgphfdpvvp lpdkievktg eedeeeffcn
     1201 raklfrfdae skewkergig nvkilkhkvs gkfrllmrrd qvlkicanhy intdmkltpn
     1261 agsdksfvwh aldyadelpk peqlairfkt peeamlfksk feeaqnilkt lgstvdtsvt
     1321 qstetgrett nqdikepsrs isgtlnfgfq flkdevsses dskgsltats tasgptpfsf
     1381 gkeapqtsss ggfaqhllkk dqwvckvclv pneasakncv scqspnldts emhstqstes
     1441 satskassnt vqdkfgsafa kkegqwdcsv csvrnepsas rcadcqnpnk tntavsfkfd
     1501 qaiapkavqk dlatafpkke gqwncavclv qneakdvncr scqnpnsksq pnvpvptvqa
     1561 slapkfgtia daskplkngf eglfakkegq wdcttclvrn ersspacvac qtpnphdkaa
     1621 gdasstpafg lksklsepag gqlgtgfkcd flekgfkfgt aeqgktpsft fqvpsdteik
     1681 pakegfsfsm pvpaggfkfg iqessknttk kdepskectt gflkssdekd kketlsesgi
     1741 pfqfqetsnk ekgdfvfgqn sstftfaela krtpgesfqf gkkdpnfkgf sgageklfss
     1801 qvskedpkpn tsadlsekdd dvyktedsdd ihfepivqmp ekvepftgee dekvlysqrv
     1861 klfrfdpets qwkergvgnl kilknevngk vrilmrreqv lkvcanhwit ttmnlkqlsg
     1921 sdkawmwman dfsdgdakle hlaakfktpe qaeefkqkfe ecqrllldip lqtphklvdt
     1981 grtaqliqka eemkcglkdl ktfltddktk lseeenvnsv casstsdvvi kphaestgpt
     2041 lewdnydlre ealddsvsss vyaspltssp vrknlfrfge sttgfsfsfk salspskspa
     2101 kqnqsrtsvg tdedsdvtqe eerdgqyfep vvplpdlvev tsgeeneqvv fshraklyry
     2161 dkdanqwker gigdikilqn ydnkqvrivm rrdqvlklca nhritpdmnm qqmkgsdraw
     2221 vwtacdfadg erkvellavr fklqdvadsf kqifdeakha qeretlitpl ssrantpkes
     2281 pcgknavavl eettrertdl shgdansdvt vevaevsnts eiptktvvsp pkfvfgsesv
     2341 ksifsneksk tftfgntsat gslfgfsfnp pkksedhipt sqnttqkele vseppkssaa
     2401 iqkpldsksd nlptstqegp snfsfrilek aekpamspdd lpsdevvivy eltptpeqra
     2461 lagflklppt ffcyknkpgy vsdedddedy etavknlngr lypsdseekk ksqdpvkavt
     2521 egresgnege cvtaqeknpd peeegkaetp qdlstsvcga ssdteddspk dvqaevktee
     2581 tkedeatsst vlvcaseqea ptpstdevta svqsapssee pesptetvpv seslsgaddt
     2641 pvdlstkksd ldcsesteen rvitfgfgss aglsfadlas knsgdfafgs kdqnfkwant
     2701 gaavfgetar kadeeeggsd devvhsddih fepivslpev evksgeedee ilfkerakly
     2761 rwdrdatqwk ergvgeikil fhtqkkyyrv lmrrdqvlkv canhvitkem nlvpsdtsnn
     2821 aliwtatdya dgevkveqla vrfksqeman sfkrrfeecq lslselqkgh lslaaglskd
     2881 tnpvvyfevs addeplghit melfsnivpr taenfralct gekgfgfkns sfhrivpdfv
     2941 cqggditnhd gtggrsiygt afedenfevk htgpgllsma nkgrdtntsq ffitlkkaeh
     3001 ldfkhvvfgf vkdgmdvvkk mesfgspkgl vngrivitdc gqi
//
LOCUS       XP_053916275             608 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 SUMO-protein ligase RanBP2 [Cuculus canorus].
ACCESSION   XP_053916275
VERSION     XP_053916275.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060300.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..608
                     /product="E3 SUMO-protein ligase RanBP2"
                     /calculated_mol_wt=66693
     Region          10..71
                     /region_name="IR1-M"
                     /note="Nup358/RanBP2 E3 ligase domain; pfam12185"
                     /db_xref="CDD:463488"
     Region          95..142
                     /region_name="IR1-M"
                     /note="Nup358/RanBP2 E3 ligase domain; pfam12185"
                     /db_xref="CDD:463488"
     Region          309..425
                     /region_name="PH-like"
                     /note="Pleckstrin homology-like domain; cl17171"
                     /db_xref="CDD:473070"
     Region          448..606
                     /region_name="cyclophilin_ABH_like"
                     /note="Cyclophilin A, B and H-like cyclophilin-type
                     peptidylprolyl cis- trans isomerase (PPIase) domain. This
                     family represents the archetypal cystolic cyclophilin
                     similar to human cyclophilins A, B and H. PPIase is an
                     enzyme which accelerates protein folding...; cd01926"
                     /db_xref="CDD:238907"
     Site            order(498..499,504,555,557,565)
                     /site_type="active"
                     /db_xref="CDD:238907"
     CDS             1..608
                     /gene="LOC104056678"
                     /coded_by="XM_054060300.1:15..1841"
                     /db_xref="GeneID:104056678"
ORIGIN      
        1 mspddlpsde vvivyeltpt peqralagfl klpptffcyk nkpgyvsded ddedyetavk
       61 nlngrlyssd segkkklqdp vkavtegres gnegecvtaq eknpdpeeeg kaetpqdlst
      121 svcgassdte ddspkdvqae vkteetkede atsstvlvcg seqeapppst devtasvqsa
      181 psseepespt etvpvsesls gaddtpvdls tkksdldcse steenrvitf gfgssaglsf
      241 adlasknsgd fafgskdqnf kwantgaavf getarkadee kggsddevvh sdnihfepiv
      301 slpevevksg eedeeilfke raklyrwdrd atqwkergvg eikilfhtqk kyyrvlmrrd
      361 qvlkvcanhv itkemnlvps dtsnnaliwt atdyadgevk veqlavrfks qemansfkrr
      421 feecqlslse lqkghlslaa glskdtnpvv yfevsaddep lghitmelfs nivprtaenf
      481 ralctgekgf gfknssfhri vpdfvcqggd itnhdgtggr siygtafede nfevkhtgpg
      541 llsmankgrd tntsqffitl kkaehldfkh vvfgfvkdgm dvvkkmesfg spkglmngki
      601 vitdcgqi
//
LOCUS       XP_009569577             340 aa            linear   VRT 09-MAR-2023
DEFINITION  tetraspanin-9 isoform X1 [Cuculus canorus].
ACCESSION   XP_009569577
VERSION     XP_009569577.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009571282.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..340
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..340
                     /product="tetraspanin-9 isoform X1"
                     /calculated_mol_wt=37366
     Region          110..329
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          206..303
                     /region_name="NET-5_like_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), NET-5_like family. Tetraspanins
                     are trans-membrane proteins with 4 trans-membrane
                     segments. Both the N- and C-termini lie on the
                     intracellular side of the membrane. This alignment
                     model...; cd03165"
                     /db_xref="CDD:239418"
     Site            order(207,212,216,218..219,222,238,241..242,245..246)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239418"
     CDS             1..340
                     /gene="TSPAN9"
                     /coded_by="XM_009571282.2:589..1611"
                     /db_xref="GeneID:104068409"
ORIGIN      
        1 meksssedss ihrspsldsk dsdfakpsts grqfgrgfta gafygttgsr tqsrtgigtg
       61 tgvgtgtgik tdkysapkgs kyvvfyldls fvfllefkkc nmargclccl kymmflfnlm
      121 fwlcgcgllg vgiwlsvsqg nfatfspsfp slsaanlvia igtvimvtgf lgclgaiken
      181 kclllsffiv lliillaeli llilffvymd kvsesakkdl kegmklynse nnvglknawn
      241 iiqaemkccg vndftdwypv lgenavpdrc ctensedcgr nstelvwktg cyervmtwfd
      301 enkhvlgsvg mcilimqilg mafsmtlfqq ihrtgkkyda
//
LOCUS       XP_053916299             253 aa            linear   VRT 09-MAR-2023
DEFINITION  tetraspanin-9 isoform X2 [Cuculus canorus].
ACCESSION   XP_053916299
VERSION     XP_053916299.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060324.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..253
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..253
                     /product="tetraspanin-9 isoform X2"
                     /calculated_mol_wt=28202
     Region          23..242
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          119..216
                     /region_name="NET-5_like_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), NET-5_like family. Tetraspanins
                     are trans-membrane proteins with 4 trans-membrane
                     segments. Both the N- and C-termini lie on the
                     intracellular side of the membrane. This alignment
                     model...; cd03165"
                     /db_xref="CDD:239418"
     Site            order(120,125,129,131..132,135,151,154..155,158..159)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239418"
     CDS             1..253
                     /gene="TSPAN9"
                     /coded_by="XM_054060324.1:100..861"
                     /db_xref="GeneID:104068409"
ORIGIN      
        1 mlpshksaef kkcnmargcl cclkymmflf nlmfwlcgcg llgvgiwlsv sqgnfatfsp
       61 sfpslsaanl viaigtvimv tgflgclgai kenkclllsf fivlliilla elillilffv
      121 ymdkvsesak kdlkegmkly nsennvglkn awniiqaemk ccgvndftdw ypvlgenavp
      181 drcctensed cgrnstelvw ktgcyervmt wfdenkhvlg svgmcilimq ilgmafsmtl
      241 fqqihrtgkk yda
//
LOCUS       XP_053916308             244 aa            linear   VRT 09-MAR-2023
DEFINITION  tetraspanin-9 isoform X3 [Cuculus canorus].
ACCESSION   XP_053916308
VERSION     XP_053916308.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060333.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..244
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..244
                     /product="tetraspanin-9 isoform X3"
                     /calculated_mol_wt=26993
     Region          26..233
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          110..207
                     /region_name="NET-5_like_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), NET-5_like family. Tetraspanins
                     are trans-membrane proteins with 4 trans-membrane
                     segments. Both the N- and C-termini lie on the
                     intracellular side of the membrane. This alignment
                     model...; cd03165"
                     /db_xref="CDD:239418"
     Site            order(111,116,120,122..123,126,142,145..146,149..150)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239418"
     CDS             1..244
                     /gene="TSPAN9"
                     /coded_by="XM_054060333.1:16..750"
                     /db_xref="GeneID:104068409"
ORIGIN      
        1 milssveqql icllknsrdc willpvlcgc gllgvgiwls vsqgnfatfs psfpslsaan
       61 lviaigtvim vtgflgclga ikenkcllls ffivlliill aelillilff vymdkvsesa
      121 kkdlkegmkl ynsennvglk nawniiqaem kccgvndftd wypvlgenav pdrcctense
      181 dcgrnstelv wktgcyervm twfdenkhvl gsvgmcilim qilgmafsmt lfqqihrtgk
      241 kyda
//
LOCUS       XP_053916316             242 aa            linear   VRT 09-MAR-2023
DEFINITION  tetraspanin-9 isoform X4 [Cuculus canorus].
ACCESSION   XP_053916316
VERSION     XP_053916316.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060341.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..242
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..242
                     /product="tetraspanin-9 isoform X4"
                     /calculated_mol_wt=26863
     Region          24..231
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          108..205
                     /region_name="NET-5_like_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), NET-5_like family. Tetraspanins
                     are trans-membrane proteins with 4 trans-membrane
                     segments. Both the N- and C-termini lie on the
                     intracellular side of the membrane. This alignment
                     model...; cd03165"
                     /db_xref="CDD:239418"
     Site            order(109,114,118,120..121,124,140,143..144,147..148)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239418"
     CDS             1..242
                     /gene="TSPAN9"
                     /coded_by="XM_054060341.1:16..744"
                     /db_xref="GeneID:104068409"
ORIGIN      
        1 mnrveqqlic llknsrdcwi llpvlcgcgl lgvgiwlsvs qgnfatfsps fpslsaanlv
       61 iaigtvimvt gflgclgaik enkclllsff ivlliillae lillilffvy mdkvsesakk
      121 dlkegmklyn sennvglkna wniiqaemkc cgvndftdwy pvlgenavpd rcctensedc
      181 grnstelvwk tgcyervmtw fdenkhvlgs vgmcilimqi lgmafsmtlf qqihrtgkky
      241 da
//
LOCUS       XP_053916322             239 aa            linear   VRT 09-MAR-2023
DEFINITION  tetraspanin-9 isoform X5 [Cuculus canorus].
ACCESSION   XP_053916322
VERSION     XP_053916322.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060347.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..239
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..239
                     /product="tetraspanin-9 isoform X5"
                     /calculated_mol_wt=26600
     Region          9..228
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          105..202
                     /region_name="NET-5_like_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), NET-5_like family. Tetraspanins
                     are trans-membrane proteins with 4 trans-membrane
                     segments. Both the N- and C-termini lie on the
                     intracellular side of the membrane. This alignment
                     model...; cd03165"
                     /db_xref="CDD:239418"
     Site            order(106,111,115,117..118,121,137,140..141,144..145)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239418"
     CDS             1..239
                     /gene="TSPAN9"
                     /coded_by="XM_054060347.1:125..844"
                     /db_xref="GeneID:104068409"
ORIGIN      
        1 margclcclk ymmflfnlmf wlcgcgllgv giwlsvsqgn fatfspsfps lsaanlviai
       61 gtvimvtgfl gclgaikenk clllsffivl liillaelil lilffvymdk vsesakkdlk
      121 egmklynsen nvglknawni iqaemkccgv ndftdwypvl genavpdrcc tensedcgrn
      181 stelvwktgc yervmtwfde nkhvlgsvgm cilimqilgm afsmtlfqqi hrtgkkyda
//
LOCUS       XP_053916332             239 aa            linear   VRT 09-MAR-2023
DEFINITION  tetraspanin-9 isoform X5 [Cuculus canorus].
ACCESSION   XP_053916332
VERSION     XP_053916332.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060357.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..239
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..239
                     /product="tetraspanin-9 isoform X5"
                     /calculated_mol_wt=26600
     Region          9..228
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          105..202
                     /region_name="NET-5_like_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), NET-5_like family. Tetraspanins
                     are trans-membrane proteins with 4 trans-membrane
                     segments. Both the N- and C-termini lie on the
                     intracellular side of the membrane. This alignment
                     model...; cd03165"
                     /db_xref="CDD:239418"
     Site            order(106,111,115,117..118,121,137,140..141,144..145)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239418"
     CDS             1..239
                     /gene="TSPAN9"
                     /coded_by="XM_054060357.1:263..982"
                     /db_xref="GeneID:104068409"
ORIGIN      
        1 margclcclk ymmflfnlmf wlcgcgllgv giwlsvsqgn fatfspsfps lsaanlviai
       61 gtvimvtgfl gclgaikenk clllsffivl liillaelil lilffvymdk vsesakkdlk
      121 egmklynsen nvglknawni iqaemkccgv ndftdwypvl genavpdrcc tensedcgrn
      181 stelvwktgc yervmtwfde nkhvlgsvgm cilimqilgm afsmtlfqqi hrtgkkyda
//
LOCUS       XP_053916341             239 aa            linear   VRT 09-MAR-2023
DEFINITION  tetraspanin-9 isoform X5 [Cuculus canorus].
ACCESSION   XP_053916341
VERSION     XP_053916341.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060366.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..239
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..239
                     /product="tetraspanin-9 isoform X5"
                     /calculated_mol_wt=26600
     Region          9..228
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          105..202
                     /region_name="NET-5_like_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), NET-5_like family. Tetraspanins
                     are trans-membrane proteins with 4 trans-membrane
                     segments. Both the N- and C-termini lie on the
                     intracellular side of the membrane. This alignment
                     model...; cd03165"
                     /db_xref="CDD:239418"
     Site            order(106,111,115,117..118,121,137,140..141,144..145)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239418"
     CDS             1..239
                     /gene="TSPAN9"
                     /coded_by="XM_054060366.1:83..802"
                     /db_xref="GeneID:104068409"
ORIGIN      
        1 margclcclk ymmflfnlmf wlcgcgllgv giwlsvsqgn fatfspsfps lsaanlviai
       61 gtvimvtgfl gclgaikenk clllsffivl liillaelil lilffvymdk vsesakkdlk
      121 egmklynsen nvglknawni iqaemkccgv ndftdwypvl genavpdrcc tensedcgrn
      181 stelvwktgc yervmtwfde nkhvlgsvgm cilimqilgm afsmtlfqqi hrtgkkyda
//
LOCUS       XP_053916350            1434 aa            linear   VRT 09-MAR-2023
DEFINITION  FYVE, RhoGEF and PH domain-containing protein 6 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053916350
VERSION     XP_053916350.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060375.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1434
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1434
                     /product="FYVE, RhoGEF and PH domain-containing protein 6
                     isoform X1"
                     /calculated_mol_wt=160804
     Region          879..1062
                     /region_name="RhoGEF"
                     /note="RhoGEF domain; pfam00621"
                     /db_xref="CDD:459876"
     Region          1081..1203
                     /region_name="PH1_FGD6"
                     /note="FYVE, RhoGEF and PH domain containing/faciogenital
                     dysplasia protein 6, N-terminal Pleckstrin Homology (PH)
                     domain; cd15793"
                     /db_xref="CDD:275436"
     Region          1221..1281
                     /region_name="FYVE_FGD6"
                     /note="FYVE domain found in FYVE, RhoGEF and PH
                     domain-containing protein 6 (FGD6) and similar proteins;
                     cd15743"
                     /db_xref="CDD:277282"
     Site            order(1223,1226,1244..1249,1251..1252,1275..1277)
                     /site_type="other"
                     /note="putative phosphatidylinositol 3-phosphate binding
                     site [chemical binding]"
                     /db_xref="CDD:277282"
     Region          1340..1428
                     /region_name="PH2_FGD5_FGD6"
                     /note="FYVE, RhoGEF and PH domain containing/faciogenital
                     dysplasia proteins 5 and 6 pleckstrin homology (PH)
                     domain, C-terminus; cd13237"
                     /db_xref="CDD:270057"
     CDS             1..1434
                     /gene="FGD6"
                     /coded_by="XM_054060375.1:155..4459"
                     /db_xref="GeneID:104055168"
ORIGIN      
        1 mssaeikkpp vapkpkfvvg hkvtpppvap kpdvvlsgvi qaarknkpai apkpkvlkss
       61 svpevkppls trkntksfee hrgdssqtld hlnyknease gstdntayil pmssckfecl
      121 hklgngensc ktqilfehfe nlenikvsek ntlalgdghn eklanrsqvv lkasileekl
      181 kdvlthsvfp nsspgrhrya dkldkgnssn skndvkiefm elvqssssse vangkqqntd
      241 skfttdesqm seifpsltek nhscscpldq eilenensss nsmfsheldm kadadktsse
      301 mssvlsskvl pvpkprkpra aclvrqdgid ttgegtkeps tlekdsfgla eqsfkkpaki
      361 nilgqsvcyn nntevlhpek ceitqsnaek mhqvkepake esasqnllpq shktsdleeg
      421 vecsldvghd lvnsvdemtd dnsmletvdk rtnfvrcdtl smslpkqlkl tsshhsstsn
      481 slhvstqkle dkevklkdes spkvvpkkpq rhslpaagvl kkaasaelve kssytssedk
      541 snsvlegchf trppakeqgt lstcdipkrs sekpvwklph pilpfsgnse slktancans
      601 lnhltvvtkp rakslssvdm ertdkpckdh qkknslkkfl nmklsvclmk sdfqkflskg
      661 sqsmdsaitn lstgdgygsg snrniaavgs erkaksakay sleisspalq kkrqrnrsqp
      721 emrsnqrlef ldghvlpgvn lsqihlnsvt rtcapeyenv rhyeeipeye nlpfamgagr
      781 nhcfewqnss svenqslgfy eveepceatn rrlrldrsse ehhdhpnvvm gdlqsdeedi
      841 mnssdedddt nsdsskgepd lqedkqskaa gkktkvyhia keimssekvf vdvlkllhid
      901 frdavahasr qlgkpviedr ilnqilyylp qlyqlnrdll releerlshw lenqriadif
      961 vkkgpylkmy styikefdkn ialldeqckk nagfasvvkd femsprcasl alkhyllkpv
     1021 qripqyrlll tdylknllee sadyrdtqda lavvievanh aneimkqgdn fqklmqiqys
     1081 lsghheivqp grvflkegtl mklsrkvmqp rmfflfndal lyttpvqsgm yklnnmlsla
     1141 gmkvkkptqe ayqnelnies versfilsas saterdewle aisksieeyt kkritfnpsk
     1201 sleeadpekq eedsplgska piwipdtrat mcmictseft ltwrrhhcra cgkivcqacs
     1261 snkhgldymk nqparvcdhc frelqkqdnq ctpksgspvn hkspssalst vlhsipsgrk
     1321 qkkipaalke vsantedstm sgylhrskgs kkpwkhlwfv iknkvlytya asedvaales
     1381 qpllgftvse vkdensesrv fhllhkntlf yifkaddphs aqkwieafqe gtil
//
LOCUS       XP_053916354            1290 aa            linear   VRT 09-MAR-2023
DEFINITION  FYVE, RhoGEF and PH domain-containing protein 6 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053916354
VERSION     XP_053916354.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060379.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1290
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1290
                     /product="FYVE, RhoGEF and PH domain-containing protein 6
                     isoform X2"
                     /calculated_mol_wt=144716
     Region          879..1062
                     /region_name="RhoGEF"
                     /note="RhoGEF domain; pfam00621"
                     /db_xref="CDD:459876"
     Region          1081..1203
                     /region_name="PH1_FGD6"
                     /note="FYVE, RhoGEF and PH domain containing/faciogenital
                     dysplasia protein 6, N-terminal Pleckstrin Homology (PH)
                     domain; cd15793"
                     /db_xref="CDD:275436"
     Region          1221..1281
                     /region_name="FYVE_FGD6"
                     /note="FYVE domain found in FYVE, RhoGEF and PH
                     domain-containing protein 6 (FGD6) and similar proteins;
                     cd15743"
                     /db_xref="CDD:277282"
     Site            order(1223,1226,1244..1249,1251..1252,1275..1277)
                     /site_type="other"
                     /note="putative phosphatidylinositol 3-phosphate binding
                     site [chemical binding]"
                     /db_xref="CDD:277282"
     CDS             1..1290
                     /gene="FGD6"
                     /coded_by="XM_054060379.1:155..4027"
                     /db_xref="GeneID:104055168"
ORIGIN      
        1 mssaeikkpp vapkpkfvvg hkvtpppvap kpdvvlsgvi qaarknkpai apkpkvlkss
       61 svpevkppls trkntksfee hrgdssqtld hlnyknease gstdntayil pmssckfecl
      121 hklgngensc ktqilfehfe nlenikvsek ntlalgdghn eklanrsqvv lkasileekl
      181 kdvlthsvfp nsspgrhrya dkldkgnssn skndvkiefm elvqssssse vangkqqntd
      241 skfttdesqm seifpsltek nhscscpldq eilenensss nsmfsheldm kadadktsse
      301 mssvlsskvl pvpkprkpra aclvrqdgid ttgegtkeps tlekdsfgla eqsfkkpaki
      361 nilgqsvcyn nntevlhpek ceitqsnaek mhqvkepake esasqnllpq shktsdleeg
      421 vecsldvghd lvnsvdemtd dnsmletvdk rtnfvrcdtl smslpkqlkl tsshhsstsn
      481 slhvstqkle dkevklkdes spkvvpkkpq rhslpaagvl kkaasaelve kssytssedk
      541 snsvlegchf trppakeqgt lstcdipkrs sekpvwklph pilpfsgnse slktancans
      601 lnhltvvtkp rakslssvdm ertdkpckdh qkknslkkfl nmklsvclmk sdfqkflskg
      661 sqsmdsaitn lstgdgygsg snrniaavgs erkaksakay sleisspalq kkrqrnrsqp
      721 emrsnqrlef ldghvlpgvn lsqihlnsvt rtcapeyenv rhyeeipeye nlpfamgagr
      781 nhcfewqnss svenqslgfy eveepceatn rrlrldrsse ehhdhpnvvm gdlqsdeedi
      841 mnssdedddt nsdsskgepd lqedkqskaa gkktkvyhia keimssekvf vdvlkllhid
      901 frdavahasr qlgkpviedr ilnqilyylp qlyqlnrdll releerlshw lenqriadif
      961 vkkgpylkmy styikefdkn ialldeqckk nagfasvvkd femsprcasl alkhyllkpv
     1021 qripqyrlll tdylknllee sadyrdtqda lavvievanh aneimkqgdn fqklmqiqys
     1081 lsghheivqp grvflkegtl mklsrkvmqp rmfflfndal lyttpvqsgm yklnnmlsla
     1141 gmkvkkptqe ayqnelnies versfilsas saterdewle aisksieeyt kkritfnpsk
     1201 sleeadpekq eedsplgska piwipdtrat mcmictseft ltwrrhhcra cgkivcqacs
     1261 snkhgldymk nqparvcdhc frelqkqasf
//
LOCUS       XP_053916363             937 aa            linear   VRT 09-MAR-2023
DEFINITION  DDB1- and CUL4-associated factor 6 isoform X1 [Cuculus canorus].
ACCESSION   XP_053916363
VERSION     XP_053916363.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060388.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..937
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..937
                     /product="DDB1- and CUL4-associated factor 6 isoform X1"
                     /calculated_mol_wt=104171
     Region          42..>285
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cl29593"
                     /db_xref="CDD:475233"
     Region          54..91
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          96..137
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          147..180
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          187..232
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          255..281
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <584..>747
                     /region_name="PTZ00341"
                     /note="Ring-infected erythrocyte surface antigen;
                     Provisional"
                     /db_xref="CDD:173534"
     Region          <807..866
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cl29593"
                     /db_xref="CDD:475233"
     CDS             1..937
                     /gene="DCAF6"
                     /coded_by="XM_054060388.1:188..3001"
                     /db_xref="GeneID:104055974"
ORIGIN      
        1 msrghcphll wdvrkrslgl eepgllrrhy lgrrefiqrl kleatlnvhd gcvnticwnd
       61 tgeyilsgsd dtnlvitnpy srkvlttirs ghranifsak flpctndkqi vscsgdgvif
      121 ytnveqdaet nrqcqytchy gttyeimtvp ndpytflscg edgtvrwfdt riktsctked
      181 ckddilincr raatsvaicp pipyylavgc sdssvriydr rmlgtratgn yagrgtvgmv
      241 arfvpphlnn rscrvtslcy sedgqeilvs yssdyiylfd pkddtarelk vpsaeerree
      301 lrqppvkrlr lrgdwsdtgp rarpeserer dgeqspnvsl mqrmsdmlsr wfeeasevaq
      361 snrgrvrlrs rggtnrtdap annnmppgte setamevdgs eqipssssst msaqapstss
      421 saesppstsl lsspdneqrp slgasaqpvl hqsefigpel aiirrglqrl rlkkaeqqrq
      481 relaggsepq ssssdqsssk gssqdpqtsd spssvvnkql gsmsldeqqe sdkprtgage
      541 pvlslhyste gtttstikll ftdewssrns ssrgsgshck tegqedslkt kaseesgped
      601 eetrvpdesp kedtsaeelk tvdetvekte stvsdqsgpe hsgihpeeng snadtvsgnv
      661 eeetsceksa nqdissqspe stanslaand epqpqpessg latpdesstr tsalqetdds
      721 dddpvlipga ryrggpghry nirgtaigdr imrrsavari qelfrrrker kemeeletln
      781 irrplikmvy kghrnsrtmi keanfwgsnf vmsgsdcghi fiwdrhtaeh lmlleadnhv
      841 vnclqphpfd pilassgidy dikiwsplee skifnrklad evitrnelml eetrntitvp
      901 asfmlrmlas lnhiradrle gdrsegsgqe nenedee
//
LOCUS       XP_053916370             923 aa            linear   VRT 09-MAR-2023
DEFINITION  DDB1- and CUL4-associated factor 6 isoform X2 [Cuculus canorus].
ACCESSION   XP_053916370
VERSION     XP_053916370.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060395.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..923
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..923
                     /product="DDB1- and CUL4-associated factor 6 isoform X2"
                     /calculated_mol_wt=102553
     Region          42..>285
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cl29593"
                     /db_xref="CDD:475233"
     Region          54..91
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          96..137
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          147..180
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          187..232
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          255..281
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <584..>732
                     /region_name="PTZ00341"
                     /note="Ring-infected erythrocyte surface antigen;
                     Provisional"
                     /db_xref="CDD:173534"
     Region          <793..852
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cl29593"
                     /db_xref="CDD:475233"
     CDS             1..923
                     /gene="DCAF6"
                     /coded_by="XM_054060395.1:187..2958"
                     /db_xref="GeneID:104055974"
ORIGIN      
        1 msrghcphll wdvrkrslgl eepgllrrhy lgrrefiqrl kleatlnvhd gcvnticwnd
       61 tgeyilsgsd dtnlvitnpy srkvlttirs ghranifsak flpctndkqi vscsgdgvif
      121 ytnveqdaet nrqcqytchy gttyeimtvp ndpytflscg edgtvrwfdt riktsctked
      181 ckddilincr raatsvaicp pipyylavgc sdssvriydr rmlgtratgn yagrgtvgmv
      241 arfvpphlnn rscrvtslcy sedgqeilvs yssdyiylfd pkddtarelk vpsaeerree
      301 lrqppvkrlr lrgdwsdtgp rarpeserer dgeqspnvsl mqrmsdmlsr wfeeasevaq
      361 snrgrvrlrs rggtnrtdap annnmppgte setamevdgs eqipssssst msaqapstss
      421 saesppstsl lsspdneqrp slgasaqpvl hqsefigpel aiirrglqrl rlkkaeqqrq
      481 relaggsepq ssssdqsssk gssqdpqtsd spssvvnkql gsmsldeqqe sdkprtgage
      541 pvlslhyste gtttstikll ftdewssrns ssrgsgshck tegqedslkt kaseesgped
      601 eetrvpdesp kedtsaeelk tvdetvekte stvsdqsgpe hsgihpeeng snadtvsgnv
      661 eeetsceksa nqdissqspe stanslaand epqpqpessg latpdesstr tsalqetdds
      721 dddpvlipga ryrggpghrr savariqelf rrrkerkeme eletlnirrp likmvykghr
      781 nsrtmikean fwgsnfvmsg sdcghifiwd rhtaehlmll eadnhvvncl qphpfdpila
      841 ssgidydiki wspleeskif nrkladevit rnelmleetr ntitvpasfm lrmlaslnhi
      901 radrlegdrs egsgqenene dee
//
LOCUS       XP_053916377             917 aa            linear   VRT 09-MAR-2023
DEFINITION  DDB1- and CUL4-associated factor 6 isoform X3 [Cuculus canorus].
ACCESSION   XP_053916377
VERSION     XP_053916377.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060402.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..917
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..917
                     /product="DDB1- and CUL4-associated factor 6 isoform X3"
                     /calculated_mol_wt=102040
     Region          42..>285
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cl29593"
                     /db_xref="CDD:475233"
     Region          54..91
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          96..137
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          147..180
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          187..232
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          255..281
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <564..>727
                     /region_name="PTZ00341"
                     /note="Ring-infected erythrocyte surface antigen;
                     Provisional"
                     /db_xref="CDD:173534"
     Region          <787..846
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cl29593"
                     /db_xref="CDD:475233"
     CDS             1..917
                     /gene="DCAF6"
                     /coded_by="XM_054060402.1:188..2941"
                     /db_xref="GeneID:104055974"
ORIGIN      
        1 msrghcphll wdvrkrslgl eepgllrrhy lgrrefiqrl kleatlnvhd gcvnticwnd
       61 tgeyilsgsd dtnlvitnpy srkvlttirs ghranifsak flpctndkqi vscsgdgvif
      121 ytnveqdaet nrqcqytchy gttyeimtvp ndpytflscg edgtvrwfdt riktsctked
      181 ckddilincr raatsvaicp pipyylavgc sdssvriydr rmlgtratgn yagrgtvgmv
      241 arfvpphlnn rscrvtslcy sedgqeilvs yssdyiylfd pkddtarelk vpsaeerree
      301 lrqppvkrlr lrgdwsdtgp rarpeserer dgeqspnvsl mqrmsdmlsr wfeeasevaq
      361 snrgrvrlrs rggtnrtdap annnmppgte setamevdgs eqipssssst msaqapstss
      421 saesppstsl lsspdneqrp slgasaqpvl hqsefigpel aiirrglqrl rlkkaeqqrq
      481 relaggsepq ssssdqsssk gssqdpqtse sdkprtgage pvlslhyste gtttstikll
      541 ftdewssrns ssrgsgshck tegqedslkt kaseesgped eetrvpdesp kedtsaeelk
      601 tvdetvekte stvsdqsgpe hsgihpeeng snadtvsgnv eeetsceksa nqdissqspe
      661 stanslaand epqpqpessg latpdesstr tsalqetdds dddpvlipga ryrggpghry
      721 nirgtaigdr imrrsavari qelfrrrker kemeeletln irrplikmvy kghrnsrtmi
      781 keanfwgsnf vmsgsdcghi fiwdrhtaeh lmlleadnhv vnclqphpfd pilassgidy
      841 dikiwsplee skifnrklad evitrnelml eetrntitvp asfmlrmlas lnhiradrle
      901 gdrsegsgqe nenedee
//
LOCUS       XP_053916386             881 aa            linear   VRT 09-MAR-2023
DEFINITION  DDB1- and CUL4-associated factor 6 isoform X4 [Cuculus canorus].
ACCESSION   XP_053916386
VERSION     XP_053916386.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060411.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..881
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..881
                     /product="DDB1- and CUL4-associated factor 6 isoform X4"
                     /calculated_mol_wt=98048
     Region          42..>285
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cl29593"
                     /db_xref="CDD:475233"
     Region          54..91
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          96..137
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          147..180
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          187..232
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          255..281
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <528..>691
                     /region_name="PTZ00341"
                     /note="Ring-infected erythrocyte surface antigen;
                     Provisional"
                     /db_xref="CDD:173534"
     Region          <751..810
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cl29593"
                     /db_xref="CDD:475233"
     CDS             1..881
                     /gene="DCAF6"
                     /coded_by="XM_054060411.1:188..2833"
                     /db_xref="GeneID:104055974"
ORIGIN      
        1 msrghcphll wdvrkrslgl eepgllrrhy lgrrefiqrl kleatlnvhd gcvnticwnd
       61 tgeyilsgsd dtnlvitnpy srkvlttirs ghranifsak flpctndkqi vscsgdgvif
      121 ytnveqdaet nrqcqytchy gttyeimtvp ndpytflscg edgtvrwfdt riktsctked
      181 ckddilincr raatsvaicp pipyylavgc sdssvriydr rmlgtratgn yagrgtvgmv
      241 arfvpphlnn rscrvtslcy sedgqeilvs yssdyiylfd pkddtarelk vpsaeerree
      301 lrqppvkrlr lrgdwsdtgp rarpeserer dgeqspnvsl mqrmsdmlsr wfeeasevaq
      361 snrgrvrlrs rggtnrtdap annnmppgte setamevdgs eqipssssst msaqapstss
      421 saesppstsl lsspdneqrp slgasaqpvl hqsdspssvv nkqlgsmsld eqqesdkprt
      481 gagepvlslh ystegtttst ikllftdews srnsssrgsg shcktegqed slktkasees
      541 gpedeetrvp despkedtsa eelktvdetv ektestvsdq sgpehsgihp eengsnadtv
      601 sgnveeetsc eksanqdiss qspestansl aandepqpqp essglatpde sstrtsalqe
      661 tddsdddpvl ipgaryrggp ghrynirgta igdrimrrsa variqelfrr rkerkemeel
      721 etlnirrpli kmvykghrns rtmikeanfw gsnfvmsgsd cghifiwdrh taehlmllea
      781 dnhvvnclqp hpfdpilass gidydikiws pleeskifnr kladevitrn elmleetrnt
      841 itvpasfmlr mlaslnhira drlegdrseg sgqenenede e
//
LOCUS       XP_053916392             861 aa            linear   VRT 09-MAR-2023
DEFINITION  DDB1- and CUL4-associated factor 6 isoform X5 [Cuculus canorus].
ACCESSION   XP_053916392
VERSION     XP_053916392.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060417.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..861
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..861
                     /product="DDB1- and CUL4-associated factor 6 isoform X5"
                     /calculated_mol_wt=95916
     Region          42..>285
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cl29593"
                     /db_xref="CDD:475233"
     Region          54..91
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          96..137
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          147..180
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          187..232
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          255..281
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <508..>671
                     /region_name="PTZ00341"
                     /note="Ring-infected erythrocyte surface antigen;
                     Provisional"
                     /db_xref="CDD:173534"
     Region          <731..790
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cl29593"
                     /db_xref="CDD:475233"
     CDS             1..861
                     /gene="DCAF6"
                     /coded_by="XM_054060417.1:187..2772"
                     /db_xref="GeneID:104055974"
ORIGIN      
        1 msrghcphll wdvrkrslgl eepgllrrhy lgrrefiqrl kleatlnvhd gcvnticwnd
       61 tgeyilsgsd dtnlvitnpy srkvlttirs ghranifsak flpctndkqi vscsgdgvif
      121 ytnveqdaet nrqcqytchy gttyeimtvp ndpytflscg edgtvrwfdt riktsctked
      181 ckddilincr raatsvaicp pipyylavgc sdssvriydr rmlgtratgn yagrgtvgmv
      241 arfvpphlnn rscrvtslcy sedgqeilvs yssdyiylfd pkddtarelk vpsaeerree
      301 lrqppvkrlr lrgdwsdtgp rarpeserer dgeqspnvsl mqrmsdmlsr wfeeasevaq
      361 snrgrvrlrs rggtnrtdap annnmppgte setamevdgs eqipssssst msaqapstss
      421 saesppstsl lsspdneqrp slgasaqpvl hqsesdkprt gagepvlslh ystegtttst
      481 ikllftdews srnsssrgsg shcktegqed slktkasees gpedeetrvp despkedtsa
      541 eelktvdetv ektestvsdq sgpehsgihp eengsnadtv sgnveeetsc eksanqdiss
      601 qspestansl aandepqpqp essglatpde sstrtsalqe tddsdddpvl ipgaryrggp
      661 ghrynirgta igdrimrrsa variqelfrr rkerkemeel etlnirrpli kmvykghrns
      721 rtmikeanfw gsnfvmsgsd cghifiwdrh taehlmllea dnhvvnclqp hpfdpilass
      781 gidydikiws pleeskifnr kladevitrn elmleetrnt itvpasfmlr mlaslnhira
      841 drlegdrseg sgqenenede e
//
LOCUS       XP_053916398             867 aa            linear   VRT 09-MAR-2023
DEFINITION  DDB1- and CUL4-associated factor 6 isoform X6 [Cuculus canorus].
ACCESSION   XP_053916398
VERSION     XP_053916398.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060423.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..867
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..867
                     /product="DDB1- and CUL4-associated factor 6 isoform X6"
                     /calculated_mol_wt=96430
     Region          42..>285
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cl29593"
                     /db_xref="CDD:475233"
     Region          54..91
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          96..137
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          147..180
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          187..232
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          255..281
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <528..>676
                     /region_name="PTZ00341"
                     /note="Ring-infected erythrocyte surface antigen;
                     Provisional"
                     /db_xref="CDD:173534"
     Region          <737..796
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cl29593"
                     /db_xref="CDD:475233"
     CDS             1..867
                     /gene="DCAF6"
                     /coded_by="XM_054060423.1:187..2790"
                     /db_xref="GeneID:104055974"
ORIGIN      
        1 msrghcphll wdvrkrslgl eepgllrrhy lgrrefiqrl kleatlnvhd gcvnticwnd
       61 tgeyilsgsd dtnlvitnpy srkvlttirs ghranifsak flpctndkqi vscsgdgvif
      121 ytnveqdaet nrqcqytchy gttyeimtvp ndpytflscg edgtvrwfdt riktsctked
      181 ckddilincr raatsvaicp pipyylavgc sdssvriydr rmlgtratgn yagrgtvgmv
      241 arfvpphlnn rscrvtslcy sedgqeilvs yssdyiylfd pkddtarelk vpsaeerree
      301 lrqppvkrlr lrgdwsdtgp rarpeserer dgeqspnvsl mqrmsdmlsr wfeeasevaq
      361 snrgrvrlrs rggtnrtdap annnmppgte setamevdgs eqipssssst msaqapstss
      421 saesppstsl lsspdneqrp slgasaqpvl hqsdspssvv nkqlgsmsld eqqesdkprt
      481 gagepvlslh ystegtttst ikllftdews srnsssrgsg shcktegqed slktkasees
      541 gpedeetrvp despkedtsa eelktvdetv ektestvsdq sgpehsgihp eengsnadtv
      601 sgnveeetsc eksanqdiss qspestansl aandepqpqp essglatpde sstrtsalqe
      661 tddsdddpvl ipgaryrggp ghrrsavari qelfrrrker kemeeletln irrplikmvy
      721 kghrnsrtmi keanfwgsnf vmsgsdcghi fiwdrhtaeh lmlleadnhv vnclqphpfd
      781 pilassgidy dikiwsplee skifnrklad evitrnelml eetrntitvp asfmlrmlas
      841 lnhiradrle gdrsegsgqe nenedee
//
LOCUS       XP_053916409             622 aa            linear   VRT 09-MAR-2023
DEFINITION  myotubularin-related protein 6 [Cuculus canorus].
ACCESSION   XP_053916409
VERSION     XP_053916409.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060434.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..622
                     /product="myotubularin-related protein 6"
                     /calculated_mol_wt=71700
     Region          1..101
                     /region_name="PH-GRAM_MTMR6"
                     /note="Myotubularian (MTM) related (MTMR) 6 protein
                     Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase
                     activators and Myotubularins (PH-GRAM) domain; cd13343"
                     /db_xref="CDD:270151"
     Region          130..431
                     /region_name="PTP_DSP_cys"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; cl28904"
                     /db_xref="CDD:475123"
     CDS             1..622
                     /gene="MTMR6"
                     /coded_by="XM_054060434.1:82..1950"
                     /db_xref="GeneID:104064224"
ORIGIN      
        1 mehirttkve qvklldrfst snksltgtly ltathllfid ssqretwilh hhiaaveklp
       61 lttsgcplvi qcknfrivhf vvprerdchd iynsllqlsr takyeelyaf synpkqnese
      121 qvkgwqlidl aeeykrmgvp nanwqlsdan rdykicetyp relyvprtas kpiivgsskf
      181 rskgrfpvls yyhknkeaai crcsqplsgf sarcledehm lqaiskanps nrymyvmdtr
      241 pklnamanra agkgyenedn ysnirfqfvg ienihvmrss lqkllevsnt kglsvndfls
      301 glensgwlrh ikavldaavf lvkaiavega svlvhcsdgw drtsqvcslg allldsyyrt
      361 tkgfmvliek dwisfghkfs drcsqldgdp keispvftqf lesvwnlteq fpqafefnea
      421 fllqihehvh scqfgnflgn cqkereelkl kektyslwpf lmdeqkkyrn plynpyfspe
      481 ltllepntvs fnfkfwrnmy hqfdrsmhpr qsvfnlvmnm seqnkqleed ikeleakikq
      541 rngqsdsvlv kehqqsvhpa ptalktppcf kkeqplipvn dvvrtiegss tadnrysefv
      601 eefskaepav vtleygvarm tc
//
LOCUS       XP_009564973             962 aa            linear   VRT 09-MAR-2023
DEFINITION  ephrin type-A receptor 1 [Cuculus canorus].
ACCESSION   XP_009564973
VERSION     XP_009564973.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566678.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564973.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..962
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..962
                     /product="ephrin type-A receptor 1"
                     /calculated_mol_wt=107567
     Region          22..196
                     /region_name="EphR_LBD"
                     /note="Ligand Binding Domain of Ephrin Receptors; cl02704"
                     /db_xref="CDD:470656"
     Site            order(34,47..50,52..53,57,59,62,97,99,147,155..157,
                     184..186,188)
                     /site_type="other"
                     /note="ephrin binding site [polypeptide binding]"
                     /db_xref="CDD:198439"
     Region          322..419
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(322,395,411)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(412..413,415..416)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          432..522
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(432,495,510)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(511..512,514..515)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          604..870
                     /region_name="PTKc_EphR"
                     /note="Catalytic domain of Ephrin Receptor Protein
                     Tyrosine Kinases; cd05033"
                     /db_xref="CDD:270629"
     Site            order(615,617..619,623,639,641,687..688,690,734,738..739,
                     741,752,771..775,784,818)
                     /site_type="active"
                     /db_xref="CDD:270629"
     Site            order(615,618..619,639,641,687..688,690,739,741,752)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270629"
     Site            order(734,738,771..775,784,818)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270629"
     Site            order(751..759,763..777)
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270629"
     Region          898..960
                     /region_name="SAM_EPH-A1"
                     /note="SAM domain of EPH-A1 subfamily of tyrosine kinase
                     receptors; cd09542"
                     /db_xref="CDD:188941"
     Site            order(916,949)
                     /site_type="other"
                     /note="putative phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:188941"
     CDS             1..962
                     /gene="EPHA1"
                     /coded_by="XM_009566678.2:229..3117"
                     /db_xref="GeneID:104064352"
ORIGIN      
        1 mklclgllll gallppegag kevdlldtst aqgelgwlpd ppevgwsevq qmingtpvym
       61 yqdcsvlseg dtdhwlrtnw iyrgeaasrv yvelkftvrd cksfkgevvt cketfnlyym
      121 eseqdvgiqf rrplfiklnt vaadrsftsr diesgtmqln tevcaisklt rrgfylafqn
      181 sgacvamvsv rvyyktcpea vrglarfpet lagsegltev pgvcveyaae emgspprmhc
      241 stdgewlvpm gqclcavgfe evdgscvacq rgfyrhslet kgclkcppns fsdesgatsc
      301 scnagfyrap legqsvactr ppsaprnvsf sligtqlslw wqppsdsggr kdvtytvfcq
      361 rchflscepc eagvvfspst sdltkpavdv dgleaytnyt favearngvs gmgpasqrta
      421 pavwvavgha apvtvsqfil tqrddsslsv swlaprqrsr tsveyevmff ekgeearytv
      481 khllepnvtl tdlqpdtayl lrvrsitplg pgpyspeqef rtlppdtgal sggvivsivf
      541 vvlllfglll gllifrrkrt rrrqarpdys tsgfdrekvw lkpyvdlqpy ddpsrgvlef
      601 tkeldvscvt menvigegef gevyrgslrl pgkerivvai ktlkstysds qwwnflreat
      661 imgqfnhpni vrlegvvtkr rpmmiiteym engaldtflr eneekfspvq lvsmlqgias
      721 gmtylserny vhrdlaarni lvtrslqckv sdfglsrile ndaegtyetk ggkipirwta
      781 peaiahrift sasdvwsfgi vmwevlsfgd kpygsmtnqe vmksledgyr lpppvdcpsi
      841 lyelmkscws hdrmrrphfq eiraelqhfi tsphllrpva dfdprvtlrl pscsgsdgip
      901 yrsipewles irmkryisnf rtagldtmes ileltaedlk qmgvslpghq krilcsiqgf
      961 ke
//
LOCUS       XP_009565018             332 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 10AC1 [Cuculus canorus].
ACCESSION   XP_009565018
VERSION     XP_009565018.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566723.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009565018.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..332
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..332
                     /product="olfactory receptor 10AC1"
                     /calculated_mol_wt=36721
     Region          41..308
                     /region_name="7tmA_OR10A-like"
                     /note="olfactory receptor subfamily 10A and related
                     proteins, member of the class A family of
                     seven-transmembrane G protein-coupled receptors; cd15225"
                     /db_xref="CDD:320353"
     Region          66..92
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320353"
     Site            order(88,91..92,105..110,112..113,116,161,163..167,203,
                     206..208,210..212,214..215,259,262..263,265..266,269,
                     275..276,278..280,283,286..287)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320353"
     Region          105..135
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320353"
     Region          148..169
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320353"
     Region          203..233
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320353"
     Region          240..269
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320353"
     Region          276..301
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320353"
     CDS             1..332
                     /gene="LOC104064390"
                     /coded_by="XM_009566723.2:1178..2176"
                     /db_xref="GeneID:104064390"
ORIGIN      
        1 mpcescmerg nkstdaalef lllgfsellf lrvllflifl ivhlvtlagn vmifmavvme
       61 psrppmlffl chlsvielcy tlvivpkall sligvdgrai sftgcavqmy lfvalggaec
      121 fllvamsydr yvaicqplhy aavmseglcl rlamacclgg favalgltma vfrlpfcqsh
      181 rinhffcdvp avlhlactqs yihelpllaa cvlllllpvl liltsyvcia aallrvtsvg
      241 rckafstcis hlavtllhyg catfiyirpk asyspardkm vslvytnitp llypliyslr
      301 nkeirgvlrk mlrrrkisql trdtnsavic vw
//
LOCUS       XP_053916434             668 aa            linear   VRT 09-MAR-2023
DEFINITION  zyxin [Cuculus canorus].
ACCESSION   XP_053916434
VERSION     XP_053916434.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060459.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..668
                     /product="zyxin"
                     /calculated_mol_wt=72156
     Region          <250..>370
                     /region_name="PHA03378"
                     /note="EBNA-3B; Provisional"
                     /db_xref="CDD:223065"
     Region          445..531
                     /region_name="LIM1_Zyxin"
                     /note="The first LIM domain of Zyxin; cd09349"
                     /db_xref="CDD:188735"
     Site            order(478,481,500,503,506,509,527,530)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188735"
     Region          538..597
                     /region_name="LIM2_Zyxin"
                     /note="The second LIM domain of Zyxin; cd09353"
                     /db_xref="CDD:188739"
     Site            order(538,541,558,561,564,567,586,589)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188739"
     Region          598..664
                     /region_name="LIM3_Zyxin"
                     /note="The third LIM domain of Zyxin; cd09435"
                     /db_xref="CDD:188819"
     Site            order(598,601,625,628,631,634,656,659)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188819"
     CDS             1..668
                     /gene="ZYX"
                     /coded_by="XM_054060459.1:16..2022"
                     /db_xref="GeneID:104064351"
ORIGIN      
        1 mlepgcgeev edervrvqsp rgrggrrghp rrgrgaekag rrdpgelgal sgdvtaasss
       61 ptlvfrgclr fsgmqgsggt ekmaspgapg trmtstvnin istpsfynpq kkfapvvapk
      121 pkvnpfkags asespvpppp gagaqraqig kvgeipsast smlaedlppp pppppgeeas
      181 fssncafppp pppfeepfpp apedfpslpp ppplmfdeep vskecspqvc gkmsstdlei
      241 dslsimldgv ekndyfrswv ppgstdslek plapkahvei psaprhaphs fpskftpkps
      301 gsfpfkppgv dmnpaptpwa apqqrkepla pvppppslpp aqptpkfspt alggspkfgs
      361 ksgadvptpp lnstryptsl qtqftapsps gsssrpqppn ftyaqqrerp qvqekphpte
      421 kpaaakdthr ftgssadppr gnscltmkev eelemltqkl mkdmehppsv eattselcgf
      481 crkplsrtqp avraldslfh mecftcfkce kqlqgqqfyn vdekpfcedc yagtlekcsv
      541 ckqtitdrml katgnsyhpq cftcvmchtp legtsfivdq anqphcvddy hrkyaprcsv
      601 csepimpepg kdetvrvval eknfhmkcyk cedcgkplsi eadengcfpl dghvlcmrch
      661 tvraktar
//
LOCUS       XP_053916445            2545 aa            linear   VRT 09-MAR-2023
DEFINITION  stabilin-2 [Cuculus canorus].
ACCESSION   XP_053916445
VERSION     XP_053916445.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060470.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2545
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2545
                     /product="stabilin-2"
                     /calculated_mol_wt=276550
     Region          <89..341
                     /region_name="VSP"
                     /note="Giardia variant-specific surface protein;
                     pfam03302"
                     /db_xref="CDD:146106"
     Region          239..273
                     /region_name="EGF_3"
                     /note="EGF domain; pfam12947"
                     /db_xref="CDD:463759"
     Region          398..503
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     Region          526..652
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     Region          834..862
                     /region_name="EGF_3"
                     /note="EGF domain; pfam12947"
                     /db_xref="CDD:463759"
     Region          870..905
                     /region_name="EGF_3"
                     /note="EGF domain; pfam12947"
                     /db_xref="CDD:463759"
     Region          918..948
                     /region_name="EGF_3"
                     /note="EGF domain; pfam12947"
                     /db_xref="CDD:463759"
     Region          1007..1126
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     Region          1143..1260
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     Region          1469..1505
                     /region_name="EGF_3"
                     /note="EGF domain; pfam12947"
                     /db_xref="CDD:463759"
     Region          1511..1547
                     /region_name="EGF_3"
                     /note="EGF domain; pfam12947"
                     /db_xref="CDD:463759"
     Region          1553..1589
                     /region_name="EGF_3"
                     /note="EGF domain; pfam12947"
                     /db_xref="CDD:463759"
     Region          1620..1720
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     Region          1740..1870
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     Region          2074..2109
                     /region_name="EGF_3"
                     /note="EGF domain; pfam12947"
                     /db_xref="CDD:463759"
     Region          2115..2152
                     /region_name="EGF_3"
                     /note="EGF domain; pfam12947"
                     /db_xref="CDD:463759"
     Region          2186..2278
                     /region_name="Link_Domain"
                     /note="The link domain is a hyaluronan (HA)-binding
                     domain. It functions to mediate adhesive interactions
                     during inflammatory leukocyte homing and tumor metastasis.
                     It is found in the CD44 receptor and in human TSG-6. TSG-6
                     is the protein product of the tumor...; cl02612"
                     /db_xref="CDD:470631"
     Site            2196..2197
                     /site_type="other"
                     /note="putative hyaluronan binding site [chemical
                     binding]"
                     /db_xref="CDD:238511"
     Region          2344..2443
                     /region_name="FAS1"
                     /note="Four repeated domains in the Fasciclin I family of
                     proteins, present in many other contexts; smart00554"
                     /db_xref="CDD:214719"
     CDS             1..2545
                     /gene="STAB2"
                     /coded_by="XM_054060470.1:384..8021"
                     /db_xref="GeneID:104060221"
ORIGIN      
        1 mekhlivlff laavkpclts qvpdemqkrc dqkllirmkt ecvpcslnlk tqcpagytkv
       61 sngtgipdcr yyleikthtl sfpgcrhhct kefeqpeccq ghwgpecmac pggaaspcng
      121 rgrciqging dgtctcqkgf sgtacekcae dnlfgpycts vcncvhgvcn sgitgdgrct
      181 clsgykglnc dqpiaeceal rcpansrcta sgeggkqlqc mclpnyhgdg tqcepinpcs
      241 knvcdpnagc tylgpnrhkc tcqegyrgdg qiclpidpcq atygncpaqs ticiydgpgk
      301 shceckehyt nfvpgkgcsm kdicetnntc hkkakcamva pgqisctcqg gsvgngfvcy
      361 gnimerlqdl naevggrwqg kltsalslme nvyewplstl gpftvlvptn kglkgtnikd
      421 llnnkqkaqy fvklhviagq lntsslnntn viytltgksg eiskgekdnq lririqggrr
      481 kgkllqgnii asngilhiid kamdnmeptf essqeetims vlqgngrysq ftsliektgl
      541 gmdlqqdnrp ytifvpsnea lsnmkaevld yllsaegswk llelvryhiv antklevasl
      601 vsieyirtma kqfiyfntts tgqvlvsgee meetdivakn griytlagvl ipptiipllp
      661 hrcdktrsqi tmgvcascls hvsgtcpqds kpipfskrkc iiegpgfpkt gcaiscniti
      721 kepkccngff gpdcspcpgg fskpcsgngq cmdgldgngt cvcaeafqgs rcqfcsdpnk
      781 ygpqcdkncl ciygkcdnri dsngiclpgs crngytgklc dkkivpceps lqlchayadc
      841 qlndgavscv ckpgyegdgm scrkidpcaa lnpggcnina eciqispgeh tcvcqagwtg
      901 dgrdcsainn clmssaagch enatciyvgp gqndckckdg fqgngiectp inscleqngk
      961 chhlanchfe ssrgwecvcp kgyegdgric ygnvanelst lseaaafnqw vneaeinsvl
     1021 sttsnltvlv pslqaienmd edekafwmsk sniptllkyh vltgaysfad fqnlsssdvl
     1081 ptslqsnflh lskengnltl egahimagdi astngiihvi dkvltplrst imprllarle
     1141 qmpdysifrg yiiqyslane ieaantytvf apnndaieny lrdkksatld kdliryhivl
     1201 dekllkndlh ngmhrdtmlg fsyqvgfflh ndqlfinnap isyanvatdk giihglekvl
     1261 eiqknrcdin dtvitekcri csqssscppg tkeitgekky cflsennmrm ytiqigcqlk
     1321 caktiitrec cagffgqqcq pcpgkagnac fgngicldgi ngtgtckcge gfvgtacesc
     1381 iegkygrncd qacacvhgkc sngidgdgsc ecdvgwrgvr ceteikddvc naschtsanc
     1441 lllsngtayc kcaagfegng tfctaidack tsnggcsaka ecrrttpgnr acvcnagytg
     1501 dgivcieinp clenhggcdk naectqtgpn qavcnclkgy sgdgkrctyi slcsqnnggc
     1561 sefaicndte ltertctckp nyigdgfkcr gniyqelpkn sstsrfyfhl qtssirditg
     1621 pgpftvfvph sdvlnsdpqv kdwvakgtma qvlryhvvgc asllyndltk vtnitslhgd
     1681 pihigysqns lilnnkaeii lsdivgangv ihvinqilvp prmqdfplkk eslkmvaaqh
     1741 gyilfsslle knnllglind pihkpvtlfw ptdaairglp qeqqdflfkk sntdklvqyl
     1801 kyhivrdaav layqlpssts lktlqgsnls iscgdnreig alflndrqck ivqrqlefdg
     1861 giaygidcll tdpslggrcd sfltvdfmgh cvscfssskc ppgtklkegv qwctyesygl
     1921 rrdgcrrncs mvihtakcck gyfgpdcqac pggpeipcng hgscddgytg tgecrcnsgf
     1981 ngtscelcwp grygpncktc ecknngqcde gysgtgrcfc etgwtgrlce tklalqpvcs
     2041 pncstnavcm enntcqckpf yngdgltcta adlckqnngg chkaaectql gvkvfcscqk
     2101 gykgdgftcl pinpcadgfn ggchehaict iigpgkrkce cknnyigdgl ncsvmqlpld
     2161 rclqdngqch pdadcadlhf qdttvgvfhl rspqgqykmt yekakeacan esatiatynq
     2221 lmyaqkaryh lcaagwlege rvgyptafss pncglgyvgi vdygrrvnls etwdvfcyre
     2281 kevnctckpg yvgdgfscsg nllqvltsfp mlknflldim vysnssrkgr eflryltdls
     2341 vratlfapnd nglmenetls grdieyhlsn asimfyedlt ngttllthlg ekllitntrg
     2401 qehqtssteq seiryvdrsa ivewdiiasn giihvisepl kappapahlh astgtgiffg
     2461 iclvtgivaf igysylrfrk rntgfqhfks kddtditpld ksqpsnianp syesssapts
     2521 septydlfsd sddqqlvisg phdqn
//
LOCUS       XP_053916453             537 aa            linear   VRT 09-MAR-2023
DEFINITION  5'-nucleotidase domain-containing protein 3 [Cuculus canorus].
ACCESSION   XP_053916453
VERSION     XP_053916453.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060478.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..537
                     /product="5'-nucleotidase domain-containing protein 3"
                     /calculated_mol_wt=63078
     Region          79..514
                     /region_name="5_nucleotid"
                     /note="5' nucleotidase family; pfam05761"
                     /db_xref="CDD:461733"
     CDS             1..537
                     /gene="NT5DC3"
                     /coded_by="XM_054060478.1:35..1648"
                     /db_xref="GeneID:104060210"
ORIGIN      
        1 maaaarclra ggrrcgalpa pyctlapqqq rrqppphdmk sylwsryrea krvtkelvps
       61 imsnmlnpda ifsnnemsls dieiygfdyd ytlvfyskhl htlifnaard llinehrypa
      121 eirkydydpn fairglhydv hrallmkida fhyiqlgtvy rglsvvpdee viamydgshv
      181 pleqmsdfyg kssqgntmkq fmdifslpem tllscvneyf lknnidyepv hlykdvkdsi
      241 rdvhikgimy raieadieky icyaeqtrav lakladhgkk mflitnspss fvdkgmkfiv
      301 gkdwrdlfdv vivqadkpnf fndkrrpfrk vnergvllwd kihklqkgqi ykqgnlyefl
      361 kltgwrgskv lyfgdhiysd ladltlkhgw rtgaiipelr seikimntek yiqtmtwlqt
      421 ltgllehmqv hrdpdsqmil eewkkerkem remnrnffna qfgslfrtde nptyflrrls
      481 rfadiymasl scllnyepdy tfyprrtplq helpgwsdql ctgtfrvpfl qervqik
//
LOCUS       XP_053916460            1961 aa            linear   VRT 09-MAR-2023
DEFINITION  A-kinase anchor protein 11 isoform X1 [Cuculus canorus].
ACCESSION   XP_053916460
VERSION     XP_053916460.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060485.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1961
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1961
                     /product="A-kinase anchor protein 11 isoform X1"
                     /calculated_mol_wt=217424
     Region          <1872..1961
                     /region_name="AKAP_110"
                     /note="A-kinase anchor protein 110 kDa (AKAP 110);
                     cl14906"
                     /db_xref="CDD:449376"
     CDS             1..1961
                     /gene="AKAP11"
                     /coded_by="XM_054060485.1:258..6143"
                     /db_xref="GeneID:104056535"
ORIGIN      
        1 mdmysraqsn rmkprismkk sfgegvlhsm kslihsrkel cslsaeecln redqenfiei
       61 tfigfaegmg tahlqelaav svelpdvlks lqlcklkene viflkdvkks sakpyvmkhq
      121 nqlpevfcvm rlplsfprik adhiftllsk yitgiryave inslqkcqte mshgedddtn
      181 qsvssieddf vtafehlded epskiqsaga csltsrnhrd aasqtiparc leavdseirv
      241 gsarrnssar sslidilglk elssvknsvt tsisdpwiqr sfykpynppd qgvnficktl
      301 fssspaesse sdgsspspvi fldeegyqks lkaklqlpki pvvkdgieds dsevseffds
      361 fdqfddleev lenpckvird pvlgkpsqkr rtaheqlssa sitmnpqkfk sdrptlpanv
      421 kkptprkpes pyssvfdvpd sprpvkttge engglfspir ssafsplgsc gsseclcrin
      481 lggdgtsqnh hdavynsysa yadsvsseil gyvfhsesss eqvcsgnvak hkgialkekk
      541 rqapdlklqa smepdkqakp khkslmirds iqkfatelve ksfgsafkdl qkgvssctna
      601 lchlaarlts svfqmafyei grrraislke raingianfl vseaiagalk elrhvkkqif
      661 tnavarfaad laeelvfegi mevcqfsyps tpiavqpssf dyedkvvrsy ardlsesviq
      721 eafielsqvd vafttqaais vstgnvkyvs aesmlestqt stifpnfndr vapkpiqdsk
      781 keytvqqalf ctsgvvssip lplagralsq hrvssdacka klstapnsdd svktykdsvh
      841 pfftsrkree evtsfrniyl tsdhsqsten tpsllhnqnv clfnrqtnnr sgtnnnselt
      901 sgskginsfs gtmvdmivne ayeaitssrv tkaveeytdf ltkkitdkkp hgqgigegfp
      961 knvfadhlak yvikqsvees ktllcstsen sasnvssqty tdigrkeqcv ikkqevekqs
     1021 nvsinedqqq mplnnprkfl vapahsvqcf seskdcwqdq kghrfssksp lpcssvalvr
     1081 hvledftdtg sssitclnkp skkhdtqkps sgpltykqad cfvpansfvs vtfgsedalr
     1141 vehksslkdg nacvmpdtpp ptplvpcqgs sernlrklsk klkgelakef apatppstpy
     1201 nptvtglfks ehdsleneef mlrlmqslse evessededh sempvekeeh lektveyady
     1261 lashiisiat emaashldgk tnereadrqv hlamqnkkcg ytasinipee tcnslwsyag
     1321 dmagkvinea kkivksrhck llrlkrinch veclylrkgd kdhsskelcd avqdqwpakr
     1381 dssvlplpqg igmtgltsky pscesvtdey adhiirvlkr eggnaellmd qyasklvyrs
     1441 iksglqqaar knkwryskkt fpgqnaqvng kleqikaant dviqqvksci hhcddqtyer
     1501 sistprtect dllyftesla rnitcdvrkk lkmsgaclpk sltdsclykr tafdevtgdl
     1561 iktrfsrtfl pfspdhklyh stgslnengy segiiqaieq yagkvaddtl emslesavlh
     1621 vaenrrsgdr lsyteklspf sgtvcrccsm kehryctest shrlptqqss ipvrhflhsg
     1681 lggdcqrqrv fqldipkihv dveqktefsd kgatvvvgka gelsytslta dsgigqdgvs
     1741 faesltteim tsamtnigqa inissvgreg fhsvesvisq qmspsigdds tgswsnlsfe
     1801 dehpdesssf lhlsdsngns sswsslgleg dmyeenlsfp tsdsdgtedk dedckdaveg
     1861 leqtrktlei vnidlepnlv daqlrvalqw laasetevsd lhfhdtatke fvflsrrlre
     1921 rdwkvgdllq avlkycemie kvsdgeqsln kslvgwllen v
//
LOCUS       XP_053916468            1954 aa            linear   VRT 09-MAR-2023
DEFINITION  A-kinase anchor protein 11 isoform X2 [Cuculus canorus].
ACCESSION   XP_053916468
VERSION     XP_053916468.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060493.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1954
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1954
                     /product="A-kinase anchor protein 11 isoform X2"
                     /calculated_mol_wt=216691
     CDS             1..1954
                     /gene="AKAP11"
                     /coded_by="XM_054060493.1:258..6122"
                     /db_xref="GeneID:104056535"
ORIGIN      
        1 mdmysraqsn rmkprismkk sfgegvlhsm kslihsrkel cslsaeecln redqenfiei
       61 tfigfaegmg tahlqelaav svelpdvlks lqlcklkene viflkdvkks sakpyvmkhq
      121 nqlpevfcvm rlplsfprik adhiftllsk yitgiryave inslqkcqte mshgedddtn
      181 qsvssieddf vtafehlded epskiqsaga csltsrnhrd aasqtiparc leavdseirv
      241 gsarrnssar sslidilglk elssvknsvt tsisdpwiqr sfykpynppd qgvnficktl
      301 fssspaesse sdgsspspvi fldeegyqks lkaklqlpki pvvkdgieds dsevseffds
      361 fdqfddleev lenpckvird pvlgkpsqkr rtaheqlssa sitmnpqkfk sdrptlpanv
      421 kkptprkpes pyssvfdvpd sprpvkttge engglfspir ssafsplgsc gsseclcrin
      481 lggdgtsqnh hdavynsysa yadsvsseil gyvfhsesss eqvcsgnvak hkgialkekk
      541 rqapdlklqa smepdkqakp khkslmirds iqkfatelve ksfgsafkdl qkgvssctna
      601 lchlaarlts svfqmafyei grrraislke raingianfl vseaiagalk elrhvkkqif
      661 tnavarfaad laeelvfegi mevcqfsyps tpiavqpssf dyedkvvrsy ardlsesviq
      721 eafielsqvd vafttqaais vstgnvkyvs aesmlestqt stifpnfndr vapkpiqdsk
      781 keytvqqalf ctsgvvssip lplagralsq hrvssdacka klstapnsdd svktykdsvh
      841 pfftsrkree evtsfrniyl tsdhsqsten tpsllhnqnv clfnrqtnnr sgtnnnselt
      901 sgskginsfs gtmvdmivne ayeaitssrv tkaveeytdf ltkkitdkkp hgqgigegfp
      961 knvfadhlak yvikqsvees ktllcstsen sasnvssqty tdigrkeqcv ikkqevekqs
     1021 nvsinedqqq mplnnprkfl vapahsvqcf seskdcwqdq kghrfssksp lpcssvalvr
     1081 hvledftdtg sssitclnkp skkhdtqkps sgpltykqad cfvpansfvs vtfgsedalr
     1141 vehksslkdg nacvmpdtpp ptplvpcqgs sernlrklsk klkgelakef apatppstpy
     1201 nptvtglfks ehdsleneef mlrlmqslse evessededh sempvekeeh lektveyady
     1261 lashiisiat emaashldgk tnereadrqv hlamqnkkcg ytasinipee tcnslwsyag
     1321 dmagkvinea kkivksrhck llrlkrinch veclylrkgd kdhsskelcd avqdqwpakr
     1381 dssvlplpqg igmtgltsky pscesvtdey adhiirvlkr eggnaellmd qyasklvyrs
     1441 iksglqqaar knkwryskkt fpgqnaqvng kleqikaant dviqqvksci hhcddqtyer
     1501 sistprtect dllyftesla rnitcdvrkk lkmsgaclpk sltdsclykr tafdevtgdl
     1561 iktrfsrtfl pfspdhklyh stgslnengy segiiqaieq yagkvaddtl emslesavlh
     1621 vaenrrsgdr lsyteklspf sgtvcrccsm kehryctest shrlptqqss ipvrhflhsg
     1681 lggdcqrqrv fqldipkihv dveqktefsd kgatvvvgka gelsytslta dsgigqdgvs
     1741 faesltteim tsamtnigqa inissvgreg fhsvesvisq qmspsigdds tgswsnlsfe
     1801 dehpdesssf lhlsdsngns sswsslgleg dmyeenlsfp tsdsdgtedk dedckdaveg
     1861 leqtrktlei vnidlepnlv daqlrvalqw laasetevsd lhfhdtatke fvfifvwqsd
     1921 dshrgnimnf kfcscgtlst vfdsflnlmy rmsw
//
LOCUS       XP_053916478            1946 aa            linear   VRT 09-MAR-2023
DEFINITION  A-kinase anchor protein 11 isoform X3 [Cuculus canorus].
ACCESSION   XP_053916478
VERSION     XP_053916478.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060503.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1946
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1946
                     /product="A-kinase anchor protein 11 isoform X3"
                     /calculated_mol_wt=215852
     Region          <1857..1946
                     /region_name="AKAP_110"
                     /note="A-kinase anchor protein 110 kDa (AKAP 110);
                     cl14906"
                     /db_xref="CDD:449376"
     CDS             1..1946
                     /gene="AKAP11"
                     /coded_by="XM_054060503.1:258..6098"
                     /db_xref="GeneID:104056535"
ORIGIN      
        1 mdmysraqsn rmkprismkk sfgegvlhsm kslihsrkel cslsaeecln redqenfiei
       61 tfigfaegmg tahlqelaav svelpdvlks lqlcklkene viflkdvkks sakpyvmkhq
      121 nqlpevfcvm rlplsfprik adhiftllsk yitgiryave inslqkcqte mshgedddtn
      181 qsvssieddf vtafehlded epskiqsaga csltsrnhrd aasqtiparc leavdseirv
      241 gsarrnssar sslidilglk elssvknsvt tsisdpwiqr sfykpynppd qgvnficktl
      301 fssspaesse sdgsspspvi fldeegyqks lkaklqlpki pvvkdgieds dsevseffds
      361 fdqfddleev lenpckvird pvlgkpsqkr rtaheqlssa sitmnpqkfk sdrptlpanv
      421 kkptprkpes pyssvfdvpd sprpvkttge engglfspir ssafsplgsc gsseclcrin
      481 lggdgtsqnh hdavynsysa yadsvsseil gyvfhsesss eqvcsgnvak hkgialkekk
      541 rqapdlklqa smepdkqakp khkslmirds iqkfatelve ksfgsafkdl qkgvssctna
      601 lchlaarlts svfqmafyei grrraislke raingianfl vseaiagalk elrhvkkqif
      661 tnavarfaad laeelvfegi mevcqfsyps tpiavqpssf dyedkvvrsy ardlsesviq
      721 eafielsqvd vafttqaais vstgnvkyvs aesmlestqt stifpnfndr vapkpiqdsk
      781 keytvqqalf ctsgvvssip lplagralsq hrvssdacka klstapnsdd svktykdsvh
      841 pfftsrkree evtsfrniyl tsdhsqsten tpsllhnqnv clfnrqtnnr sgtnnnselt
      901 sgskginsfs gtmvdmivne ayeaitssrv tkaveeytdf ltkkitdkkp hgqgigegfp
      961 knvfadhlak yvikqsvees ktllcstsen sasnvssqty tdigrkeqcv ikkqevekqs
     1021 nvsinedqqq mplnnprkfl vapahsvqcf seskdcwqdq kghrfssksp lpcssvalvr
     1081 hvledftdtg sssitclnkp skkhdtqkps sgpltykqad cfvpansfvs vtfgsedalr
     1141 vehksslkdg nacvmpdtpp ptplvpcqgs sernlrklsk klkgelakef apatppstpy
     1201 nptvtglfks ehdsleneef mlrlmqslse evessededh sempvekeeh lektveyady
     1261 lashiisiat emaashldgk tnereadrqv hlamqnkkcg ytasinipee tcnslwsyag
     1321 dmagkvinea kkivksrhck llrlkrinch veclylrkgd kdhsskelcd avqdqwpakr
     1381 dssvlplpqg igmtgltsky pscesvtdey adhiirvlkr eggnaellmd qyasklvyrs
     1441 iksglqqaar knkwryskkt fpgqnaqvng kleqikaant dviqqvksci hhcddqtyer
     1501 sistprtect dllyftesla rnitcdvrkk lkmsgaclpk sltdsclykr tafdevtgdl
     1561 iktrfsrtfl pfspdhklyh stgslnengy segiiqaieq yagkvaddtl emslesavlh
     1621 vaenrrsgdr lsyteklspf sgtvcrccsm kehryctest shrlptqqss ipvrhflhsg
     1681 lggdcqrqrv fqldipkihv dveqktefsd kgatvvvgka gelsytslta dsgigqdgvs
     1741 faesltteim tsamtnigqa inisqqmsps igddstgsws nlsfedehpd esssflhlsd
     1801 sngnssswss lglegdmyee nlsfptsdsd gtedkdedck davegleqtr ktleivnidl
     1861 epnlvdaqlr valqwlaase tevsdlhfhd tatkefvfls rrlrerdwkv gdllqavlky
     1921 cemiekvsdg eqslnkslvg wllenv
//
LOCUS       XP_053916487            1933 aa            linear   VRT 09-MAR-2023
DEFINITION  A-kinase anchor protein 11 isoform X4 [Cuculus canorus].
ACCESSION   XP_053916487
VERSION     XP_053916487.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060512.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1933
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1933
                     /product="A-kinase anchor protein 11 isoform X4"
                     /calculated_mol_wt=214431
     Region          <1844..1933
                     /region_name="AKAP_110"
                     /note="A-kinase anchor protein 110 kDa (AKAP 110);
                     cl14906"
                     /db_xref="CDD:449376"
     CDS             1..1933
                     /gene="AKAP11"
                     /coded_by="XM_054060512.1:258..6059"
                     /db_xref="GeneID:104056535"
ORIGIN      
        1 mdmysraqsn rmkprismkk sfgegvlhsm kslihsrkel cslsaeecln redqenfiei
       61 tfigfaegmg tahlqelaav svelpdvlks lqlcklkene viflkdvkks sakpyvmkhq
      121 nqlpevfcvm rlplsfprik adhiftllsk yitgiryave inslqkcqte mshgedddtn
      181 qsvssieddf vtafehlded epskiqsaga csltsrnhrd aasqtiparc leavdseirv
      241 gsarrnssar sslidilglk elssvknsvt tsisdpwiqr sfykpynppd qgvnficktl
      301 fssspaesse sdgsspspvi fldeegyqks lkaklqlpki pvvkdgieds dsevseffds
      361 fdqfddleev lenpckvird pvlgkpsqkr rtaheqlssa sitmnpqkfk sdrptlpanv
      421 kkptprkpes pyssvfdvpd sprpvkttge engglfspir ssafsplgsc gsseclcrin
      481 lggdgtsqnh hdavynsysa yadsvsseil gyvfhsesss eqvcsgnvak hkgialkekk
      541 rqapdlklqa smepdkqakp khkslmirds iqkfatelve ksfgsafkdl qkgvssctna
      601 lchlaarlts svfqmafyei grrraislke raingianfl vseaiagalk elrhvkkqif
      661 tnavarfaad laeelvfegi mevcqfsyps tpiavqpssf dyedkvvrsy ardlsesviq
      721 eafielsqvd vafttqaais vstgnvkyvs aesmlestqt stifpnfndr vapkpiqdsk
      781 keytvqqalf ctsgvvssip lplagralsq hrvssdacka klstapnsdd svktykdsvh
      841 pfftsrkree evtsfrniyl tsdhsqsten tpsllhnqnv clfnrqtnnr sgtnnnselt
      901 sgskginsfs gtmvdmivne ayeaitssrv tkaveeytdf ltkkitdkkp hgqgigegfp
      961 knvfadhlak yvikqsvees ktllcstsen sasnvssqty tdigrkeqcv ikkqevekqs
     1021 nvsinedqqq mplnnprkfl vapahsvqcf seskdcwqdq kghrfssksp lpcssvalvr
     1081 hvledftdtg sssitclnkp skkhdtqkps sgpltykqad cfvpansfvs vtfgsedalr
     1141 vehksslkdg nacvmpdtpp ptplvpcqgs sernlrklsk klkgelakef apatppstpy
     1201 nptvtglfks ehdsleneef mlrlmqslse evessededh sempvekeeh lektveyady
     1261 lashiisiat emaashldgk tnereadrqv hlamqnkkcg ytasinipee tcnslwsyag
     1321 dmagkvinea kkivksrhck llrlkrinch veclylrkgd kdhsskelcd avqdqwpakr
     1381 dssvlplpqg igmtgltsky pscesvtdey adhiirvlkr eggnaellmd qyasklvyrs
     1441 iksglqqaar knkwryskkt fpgqnaqvng kleqikaant dviqqvksci hhcddqtyer
     1501 sistprtect dllyftesla rnitcdvrkk lkmsgaclpk sltdsclykr tafdevtgdl
     1561 iktrfsrtfl pfspdhklyh stgslnengy segiiqaieq yagkvaddtl emslesavlh
     1621 vaenrrsgdr lsyteklspf sgtvcrccsm kehryctest shrlptqqss ipvrhflhsg
     1681 lggdcqrqrv fqldipkihv dveqktefsd kgatvvvgka gelsytslta dsgigqdgvs
     1741 faesltteim tsamtnigqa inissvgreg fhsvesvisq qmspsigdds tgswsnlsfe
     1801 dehpdesssf lhlsdsdgte dkdedckdav egleqtrktl eivnidlepn lvdaqlrval
     1861 qwlaasetev sdlhfhdtat kefvflsrrl rerdwkvgdl lqavlkycem iekvsdgeqs
     1921 lnkslvgwll env
//
LOCUS       XP_053916504            1920 aa            linear   VRT 09-MAR-2023
DEFINITION  A-kinase anchor protein 11 isoform X5 [Cuculus canorus].
ACCESSION   XP_053916504
VERSION     XP_053916504.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060529.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1920
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1920
                     /product="A-kinase anchor protein 11 isoform X5"
                     /calculated_mol_wt=212687
     CDS             1..1920
                     /gene="AKAP11"
                     /coded_by="XM_054060529.1:258..6020"
                     /db_xref="GeneID:104056535"
ORIGIN      
        1 mdmysraqsn rmkprismkk sfgegvlhsm kslihsrkel cslsaeecln redqenfiei
       61 tfigfaegmg tahlqelaav svelpdvlks lqlcklkene viflkdvkks sakpyvmkhq
      121 nqlpevfcvm rlplsfprik adhiftllsk yitgiryave inslqkcqte mshgedddtn
      181 qsvssieddf vtafehlded epskiqsaga csltsrnhrd aasqtiparc leavdseirv
      241 gsarrnssar sslidilglk elssvknsvt tsisdpwiqr sfykpynppd qgvnficktl
      301 fssspaesse sdgsspspvi fldeegyqks lkaklqlpki pvvkdgieds dsevseffds
      361 fdqfddleev lenpckvird pvlgkpsqkr rtaheqlssa sitmnpqkfk sdrptlpanv
      421 kkptprkpes pyssvfdvpd sprpvkttge engglfspir ssafsplgsc gsseclcrin
      481 lggdgtsqnh hdavynsysa yadsvsseil gyvfhsesss eqvcsgnvak hkgialkekk
      541 rqapdlklqa smepdkqakp khkslmirds iqkfatelve ksfgsafkdl qkgvssctna
      601 lchlaarlts svfqmafyei grrraislke raingianfl vseaiagalk elrhvkkqif
      661 tnavarfaad laeelvfegi mevcqfsyps tpiavqpssf dyedkvvrsy ardlsesviq
      721 eafielsqvd vafttqaais vstgnvkyvs aesmlestqt stifpnfndr vapkpiqdsk
      781 keytvqqalf ctsgvvssip lplagralsq hrvssdacka klstapnsdd svktykdsvh
      841 pfftsrkree evtsfrniyl tsdhsqsten tpsllhnqnv clfnrqtnnr sgtnnnselt
      901 sgskginsfs gtmvdmivne ayeaitssrv tkaveeytdf ltkkitdkkp hgqgigegfp
      961 knvfadhlak yvikqsvees ktllcstsen sasnvssqty tdigrkeqcv ikkqevekqs
     1021 nvsinedqqq mplnnprkfl vapahsvqcf seskdcwqdq kghrfssksp lpcssvalvr
     1081 hvledftdtg sssitclnkp skkhdtqkps sgpltykqad cfvpansfvs vtfgsedalr
     1141 vehksslkdg nacvmpdtpp ptplvpcqgs sernlrklsk klkgelakef apatppstpy
     1201 nptvtglfks ehdsleneef mlrlmqslse evessededh sempvekeeh lektveyady
     1261 lashiisiat emaashldgk tnereadrqv hlamqnkkcg ytasinipee tcnslwsyag
     1321 dmagkvinea kkivksrhck llrlkrinch veclylrkgd kdhsskelcd avqdqwpakr
     1381 dssvlplpqg igmtgltsky pscesvtdey adhiirvlkr eggnaellmd qyasklvyrs
     1441 iksglqqaar knkwryskkt fpgqnaqvng kleqikaant dviqqvksci hhcddqtyer
     1501 sistprtect dllyftesla rnitcdvrkk lkmsgaclpk sltdsclykr tafdevtgdl
     1561 iktrfsrtfl pfspdhklyh stgslnengy segiiqaieq yagkvaddtl emslesavlh
     1621 vaenrrsgdr lsyteklspf sgtvcrccsm kehryctest shrlptqqss ipvrhflhsg
     1681 lggdcqrqrv fqldipkihv dveqktefsd kgatvvvgka gelsytslta dsgigqdgvs
     1741 faesltteim tsamtnigqa inissvgreg fhsvesvisq qmspsigdds tgswsnlsfe
     1801 dehpdesssf lhlsdsngns sswsslgleg dmyeenlsfp tsdsdgtedk dedckdaveg
     1861 leqtrktlei vnidlepnlv daqlrvalqw laasetevsd lhfhdtatke fvfirffnna
//
LOCUS       XP_053916510            1918 aa            linear   VRT 09-MAR-2023
DEFINITION  A-kinase anchor protein 11 isoform X6 [Cuculus canorus].
ACCESSION   XP_053916510
VERSION     XP_053916510.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060535.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1918
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1918
                     /product="A-kinase anchor protein 11 isoform X6"
                     /calculated_mol_wt=212498
     CDS             1..1918
                     /gene="AKAP11"
                     /coded_by="XM_054060535.1:258..6014"
                     /db_xref="GeneID:104056535"
ORIGIN      
        1 mdmysraqsn rmkprismkk sfgegvlhsm kslihsrkel cslsaeecln redqenfiei
       61 tfigfaegmg tahlqelaav svelpdvlks lqlcklkene viflkdvkks sakpyvmkhq
      121 nqlpevfcvm rlplsfprik adhiftllsk yitgiryave inslqkcqte mshgedddtn
      181 qsvssieddf vtafehlded epskiqsaga csltsrnhrd aasqtiparc leavdseirv
      241 gsarrnssar sslidilglk elssvknsvt tsisdpwiqr sfykpynppd qgvnficktl
      301 fssspaesse sdgsspspvi fldeegyqks lkaklqlpki pvvkdgieds dsevseffds
      361 fdqfddleev lenpckvird pvlgkpsqkr rtaheqlssa sitmnpqkfk sdrptlpanv
      421 kkptprkpes pyssvfdvpd sprpvkttge engglfspir ssafsplgsc gsseclcrin
      481 lggdgtsqnh hdavynsysa yadsvsseil gyvfhsesss eqvcsgnvak hkgialkekk
      541 rqapdlklqa smepdkqakp khkslmirds iqkfatelve ksfgsafkdl qkgvssctna
      601 lchlaarlts svfqmafyei grrraislke raingianfl vseaiagalk elrhvkkqif
      661 tnavarfaad laeelvfegi mevcqfsyps tpiavqpssf dyedkvvrsy ardlsesviq
      721 eafielsqvd vafttqaais vstgnvkyvs aesmlestqt stifpnfndr vapkpiqdsk
      781 keytvqqalf ctsgvvssip lplagralsq hrvssdacka klstapnsdd svktykdsvh
      841 pfftsrkree evtsfrniyl tsdhsqsten tpsllhnqnv clfnrqtnnr sgtnnnselt
      901 sgskginsfs gtmvdmivne ayeaitssrv tkaveeytdf ltkkitdkkp hgqgigegfp
      961 knvfadhlak yvikqsvees ktllcstsen sasnvssqty tdigrkeqcv ikkqevekqs
     1021 nvsinedqqq mplnnprkfl vapahsvqcf seskdcwqdq kghrfssksp lpcssvalvr
     1081 hvledftdtg sssitclnkp skkhdtqkps sgpltykqad cfvpansfvs vtfgsedalr
     1141 vehksslkdg nacvmpdtpp ptplvpcqgs sernlrklsk klkgelakef apatppstpy
     1201 nptvtglfks ehdsleneef mlrlmqslse evessededh sempvekeeh lektveyady
     1261 lashiisiat emaashldgk tnereadrqv hlamqnkkcg ytasinipee tcnslwsyag
     1321 dmagkvinea kkivksrhck llrlkrinch veclylrkgd kdhsskelcd avqdqwpakr
     1381 dssvlplpqg igmtgltsky pscesvtdey adhiirvlkr eggnaellmd qyasklvyrs
     1441 iksglqqaar knkwryskkt fpgqnaqvng kleqikaant dviqqvksci hhcddqtyer
     1501 sistprtect dllyftesla rnitcdvrkk lkmsgaclpk sltdsclykr tafdevtgdl
     1561 iktrfsrtfl pfspdhklyh stgslnengy segiiqaieq yagkvaddtl emslesavlh
     1621 vaenrrsgdr lsyteklspf sgtvcrccsm kehryctest shrlptqqss ipvrhflhsg
     1681 lggdcqrqrv fqldipkihv dveqktefsd kgatvvvgka gelsytslta dsgigqdgvs
     1741 faesltteim tsamtnigqa inissvgreg fhsvesvisq qmspsigdds tgswsnlsfe
     1801 dehpdesssf lhlsdsngns sswsslgleg dmyeenlsfp tsdsdgtedk dedckdaveg
     1861 leqtrktlei vnidlepnlv daqlrvalqw laasetevsd lhfhdtatke fvfiykri
//
LOCUS       XP_053916520            1918 aa            linear   VRT 09-MAR-2023
DEFINITION  A-kinase anchor protein 11 isoform X7 [Cuculus canorus].
ACCESSION   XP_053916520
VERSION     XP_053916520.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060545.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1918
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1918
                     /product="A-kinase anchor protein 11 isoform X7"
                     /calculated_mol_wt=212859
     Region          <1829..1918
                     /region_name="AKAP_110"
                     /note="A-kinase anchor protein 110 kDa (AKAP 110);
                     cl14906"
                     /db_xref="CDD:449376"
     CDS             1..1918
                     /gene="AKAP11"
                     /coded_by="XM_054060545.1:258..6014"
                     /db_xref="GeneID:104056535"
ORIGIN      
        1 mdmysraqsn rmkprismkk sfgegvlhsm kslihsrkel cslsaeecln redqenfiei
       61 tfigfaegmg tahlqelaav svelpdvlks lqlcklkene viflkdvkks sakpyvmkhq
      121 nqlpevfcvm rlplsfprik adhiftllsk yitgiryave inslqkcqte mshgedddtn
      181 qsvssieddf vtafehlded epskiqsaga csltsrnhrd aasqtiparc leavdseirv
      241 gsarrnssar sslidilglk elssvknsvt tsisdpwiqr sfykpynppd qgvnficktl
      301 fssspaesse sdgsspspvi fldeegyqks lkaklqlpki pvvkdgieds dsevseffds
      361 fdqfddleev lenpckvird pvlgkpsqkr rtaheqlssa sitmnpqkfk sdrptlpanv
      421 kkptprkpes pyssvfdvpd sprpvkttge engglfspir ssafsplgsc gsseclcrin
      481 lggdgtsqnh hdavynsysa yadsvsseil gyvfhsesss eqvcsgnvak hkgialkekk
      541 rqapdlklqa smepdkqakp khkslmirds iqkfatelve ksfgsafkdl qkgvssctna
      601 lchlaarlts svfqmafyei grrraislke raingianfl vseaiagalk elrhvkkqif
      661 tnavarfaad laeelvfegi mevcqfsyps tpiavqpssf dyedkvvrsy ardlsesviq
      721 eafielsqvd vafttqaais vstgnvkyvs aesmlestqt stifpnfndr vapkpiqdsk
      781 keytvqqalf ctsgvvssip lplagralsq hrvssdacka klstapnsdd svktykdsvh
      841 pfftsrkree evtsfrniyl tsdhsqsten tpsllhnqnv clfnrqtnnr sgtnnnselt
      901 sgskginsfs gtmvdmivne ayeaitssrv tkaveeytdf ltkkitdkkp hgqgigegfp
      961 knvfadhlak yvikqsvees ktllcstsen sasnvssqty tdigrkeqcv ikkqevekqs
     1021 nvsinedqqq mplnnprkfl vapahsvqcf seskdcwqdq kghrfssksp lpcssvalvr
     1081 hvledftdtg sssitclnkp skkhdtqkps sgpltykqad cfvpansfvs vtfgsedalr
     1141 vehksslkdg nacvmpdtpp ptplvpcqgs sernlrklsk klkgelakef apatppstpy
     1201 nptvtglfks ehdsleneef mlrlmqslse evessededh sempvekeeh lektveyady
     1261 lashiisiat emaashldgk tnereadrqv hlamqnkkcg ytasinipee tcnslwsyag
     1321 dmagkvinea kkivksrhck llrlkrinch veclylrkgd kdhsskelcd avqdqwpakr
     1381 dssvlplpqg igmtgltsky pscesvtdey adhiirvlkr eggnaellmd qyasklvyrs
     1441 iksglqqaar knkwryskkt fpgqnaqvng kleqikaant dviqqvksci hhcddqtyer
     1501 sistprtect dllyftesla rnitcdvrkk lkmsgaclpk sltdsclykr tafdevtgdl
     1561 iktrfsrtfl pfspdhklyh stgslnengy segiiqaieq yagkvaddtl emslesavlh
     1621 vaenrrsgdr lsyteklspf sgtvcrccsm kehryctest shrlptqqss ipvrhflhsg
     1681 lggdcqrqrv fqldipkihv dveqktefsd kgatvvvgka gelsytslta dsgigqdgvs
     1741 faesltteim tsamtnigqa inisqqmsps igddstgsws nlsfedehpd esssflhlsd
     1801 sdgtedkded ckdavegleq trktleivni dlepnlvdaq lrvalqwlaa setevsdlhf
     1861 hdtatkefvf lsrrlrerdw kvgdllqavl kycemiekvs dgeqslnksl vgwllenv
//
LOCUS       XP_053916529            1044 aa            linear   VRT 09-MAR-2023
DEFINITION  trifunctional purine biosynthetic protein adenosine-3-like isoform
            X1 [Cuculus canorus].
ACCESSION   XP_053916529
VERSION     XP_053916529.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060554.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1044
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1044
                     /product="trifunctional purine biosynthetic protein
                     adenosine-3-like isoform X1"
                     /calculated_mol_wt=112740
     Region          4..424
                     /region_name="PurD"
                     /note="Phosphoribosylamine-glycine ligase [Nucleotide
                     transport and metabolism]; COG0151"
                     /db_xref="CDD:439921"
     Region          474..771
                     /region_name="PurM"
                     /note="PurM (Aminoimidazole Ribonucleotide [AIR]
                     synthetase), one of eleven enzymes required for purine
                     biosynthesis, catalyzes the conversion of
                     formylglycinamide ribonucleotide (FGAM) and ATP to AIR,
                     ADP, and Pi, the fifth step in de novo purine
                     biosynthesis; cd02196"
                     /db_xref="CDD:100032"
     Site            order(479..483,494..497,499,501,507,529,533,539,542,545,
                     576,580,582,589..590,594,698)
                     /site_type="other"
                     /note="dimerization interface [polypeptide binding]"
                     /db_xref="CDD:100032"
     Site            order(529,574..576)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:100032"
     Region          816..998
                     /region_name="FMT_core_GART"
                     /note="Phosphoribosylglycinamide formyltransferase (GAR
                     transformylase, GART); cd08645"
                     /db_xref="CDD:187714"
     Site            order(821,826..828,899..906,911,920..923,931,951,953..954,
                     987)
                     /site_type="active"
                     /db_xref="CDD:187714"
     Site            order(826..827,900..901,921,923,987)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:187714"
     Site            order(899,902,904..906,911,920,953..954)
                     /site_type="other"
                     /note="cosubstrate binding site"
                     /db_xref="CDD:187714"
     CDS             1..1044
                     /gene="LOC104064788"
                     /coded_by="XM_054060554.1:301..3435"
                     /db_xref="GeneID:104064788"
ORIGIN      
        1 madrvlvigs ggrehalawk laqsphvkhv fvapgnagta dngkisnsav lvsnhtivtq
       61 fckdhniglv lvgqeallaa givddlraag vrcfgpsaka aqlasntifa kafldrhgip
      121 tarwkaftnp qeacrfiist dfpacvvrar gpaarkevti atskeeacra vqeimqdrmf
      181 gemvvveell qgeelsclcf tdgvtvasmp paqahkrlld gdqgpntggm gaycpvpqvp
      241 evllekinda ilqhvvdsmr qegtayvgvl qtglmltkdg vkilnfkcqf gdpqcqvilp
      301 llkndfyevi qatidgklcs fmpawsenst avcvvmaspg ypgdydkgme vtgllqakel
      361 glqvfhagtt lkdgrvvtsg grvlsitavk edlikalgea nrgvaairfk gatyrkdigh
      421 rgiqllkqsl gliykerrve alisdvlfhq letsvvsgtr sgkisyikkr gshseiggfa
      481 gffdlkasgy ddpilvsqak glgpklqiaq vckkhdtigq dlvamcvnai laqgaeplff
      541 lyyfacgkld vevtetikeg iaeacrnagc aflgremaev tgtyssgeyd lagfvvgave
      601 rgqmllqlqr adeedvlvgl assgihgrgf siirkillms slhysspapg scgektlgdi
      661 llnpskmysp sllpilrsgh vkafafiaee glvegisril pehvgavlda lswkipeifc
      721 wiyregnlse eemvqtfhcg igavlvvqkd lgqhvlkdiq rheeawligk vaapchtggs
      781 hikvenllea lqlsspqhll ntvvesqnqp rknkvkvavl isgtgtnlaa lisyakepgs
      841 caqvvlvisn ksgveelrna aragiptrvi dhklygsrse fdstidrvle efavelicls
      901 gfmrvlsspf lrkwkgkiln aspslfppik dgnahqqalh sgfkvtgctv hfvleesspk
      961 avihqepvsv kaddteemls ervkeaecra fpialqlvas gavqlgadgk tywkqesqsl
     1021 clqeekrdcm ssfvamepqe tdvv
//
LOCUS       XP_009565461            1043 aa            linear   VRT 09-MAR-2023
DEFINITION  trifunctional purine biosynthetic protein adenosine-3-like isoform
            X2 [Cuculus canorus].
ACCESSION   XP_009565461
VERSION     XP_009565461.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009567166.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009565461.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1043
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1043
                     /product="trifunctional purine biosynthetic protein
                     adenosine-3-like isoform X2"
                     /calculated_mol_wt=112642
     Region          12..432
                     /region_name="PurD"
                     /note="Phosphoribosylamine-glycine ligase [Nucleotide
                     transport and metabolism]; COG0151"
                     /db_xref="CDD:439921"
     Region          473..770
                     /region_name="PurM"
                     /note="PurM (Aminoimidazole Ribonucleotide [AIR]
                     synthetase), one of eleven enzymes required for purine
                     biosynthesis, catalyzes the conversion of
                     formylglycinamide ribonucleotide (FGAM) and ATP to AIR,
                     ADP, and Pi, the fifth step in de novo purine
                     biosynthesis; cd02196"
                     /db_xref="CDD:100032"
     Site            order(478..482,493..496,498,500,506,528,532,538,541,544,
                     575,579,581,588..589,593,697)
                     /site_type="other"
                     /note="dimerization interface [polypeptide binding]"
                     /db_xref="CDD:100032"
     Site            order(528,573..575)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:100032"
     Region          815..997
                     /region_name="FMT_core_GART"
                     /note="Phosphoribosylglycinamide formyltransferase (GAR
                     transformylase, GART); cd08645"
                     /db_xref="CDD:187714"
     Site            order(820,825..827,898..905,910,919..922,930,950,952..953,
                     986)
                     /site_type="active"
                     /db_xref="CDD:187714"
     Site            order(825..826,899..900,920,922,986)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:187714"
     Site            order(898,901,903..905,910,919,952..953)
                     /site_type="other"
                     /note="cosubstrate binding site"
                     /db_xref="CDD:187714"
     CDS             1..1043
                     /gene="LOC104064788"
                     /coded_by="XM_009567166.2:1..3132"
                     /db_xref="GeneID:104064788"
ORIGIN      
        1 milvlhrlma drvlvigsgg rehalawkla qsphvkhvfv apgnagtadn gkisnsavlv
       61 snhtivtqfc kdhniglvlv gqeallaagi vddlraagvr cfgpsakaaq lasntifaka
      121 fldrhgipta rwkaftnpqe acrfiistdf pacvvrargp aarkevtiat skeeacravq
      181 eimqdrmfge mvvveellqg eelsclcftd gvtvasmppa qahkrlldgd qgpntggmga
      241 ycpvpqvpev llekindail qhvvdsmrqe gtayvgvlqt glmltkdgvk ilnfkcqfgd
      301 pqcqvilpll kndfyeviqa tidgklcsfm pawsenstav cvvmaspgyp gdydkgmevt
      361 gllqakelgl qvfhagttlk dgrvvtsggr vlsitavked likalgeanr gvaairfkga
      421 tyrkdighrg iqllkqslgl iykerrveal isdvlfhqle tsvvsgtrsg shseiggfag
      481 ffdlkasgyd dpilvsqakg lgpklqiaqv ckkhdtigqd lvamcvnail aqgaeplffl
      541 yyfacgkldv evtetikegi aeacrnagca flgremaevt gtyssgeydl agfvvgaver
      601 gqmllqlqra deedvlvgla ssgihgrgfs iirkillmss lhysspapgs cgektlgdil
      661 lnpskmysps llpilrsghv kafafiaeeg lvegisrilp ehvgavldal swkipeifcw
      721 iyregnlsee emvqtfhcgi gavlvvqkdl gqhvlkdiqr heeawligkv aapchtggsh
      781 ikvenlleal qlsspqhlln tvvesqnqpr knkvkvavli sgtgtnlaal isyakepgsc
      841 aqvvlvisnk sgveelrnaa ragiptrvid hklygsrsef dstidrvlee faveliclsg
      901 fmrvlsspfl rkwkgkilna spslfppikd gnahqqalhs gfkvtgctvh fvleesspka
      961 vihqepvsvk addteemlse rvkeaecraf pialqlvasg avqlgadgkt ywkqesqslc
     1021 lqeekrdcms sfvamepqet dvv
//
LOCUS       XP_053916546            1034 aa            linear   VRT 09-MAR-2023
DEFINITION  trifunctional purine biosynthetic protein adenosine-3-like isoform
            X3 [Cuculus canorus].
ACCESSION   XP_053916546
VERSION     XP_053916546.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060571.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1034
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1034
                     /product="trifunctional purine biosynthetic protein
                     adenosine-3-like isoform X3"
                     /calculated_mol_wt=111609
     Region          4..424
                     /region_name="PurD"
                     /note="Phosphoribosylamine-glycine ligase [Nucleotide
                     transport and metabolism]; COG0151"
                     /db_xref="CDD:439921"
     Region          465..762
                     /region_name="PurM"
                     /note="PurM (Aminoimidazole Ribonucleotide [AIR]
                     synthetase), one of eleven enzymes required for purine
                     biosynthesis, catalyzes the conversion of
                     formylglycinamide ribonucleotide (FGAM) and ATP to AIR,
                     ADP, and Pi, the fifth step in de novo purine
                     biosynthesis; cd02196"
                     /db_xref="CDD:100032"
     Site            order(470..474,485..488,490,492,498,520,524,530,533,536,
                     567,571,573,580..581,585,689)
                     /site_type="other"
                     /note="dimerization interface [polypeptide binding]"
                     /db_xref="CDD:100032"
     Site            order(520,565..567)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:100032"
     Region          806..988
                     /region_name="FMT_core_GART"
                     /note="Phosphoribosylglycinamide formyltransferase (GAR
                     transformylase, GART); cd08645"
                     /db_xref="CDD:187714"
     Site            order(811,816..818,889..896,901,910..913,921,941,943..944,
                     977)
                     /site_type="active"
                     /db_xref="CDD:187714"
     Site            order(816..817,890..891,911,913,977)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:187714"
     Site            order(889,892,894..896,901,910,943..944)
                     /site_type="other"
                     /note="cosubstrate binding site"
                     /db_xref="CDD:187714"
     CDS             1..1034
                     /gene="LOC104064788"
                     /coded_by="XM_054060571.1:301..3405"
                     /db_xref="GeneID:104064788"
ORIGIN      
        1 madrvlvigs ggrehalawk laqsphvkhv fvapgnagta dngkisnsav lvsnhtivtq
       61 fckdhniglv lvgqeallaa givddlraag vrcfgpsaka aqlasntifa kafldrhgip
      121 tarwkaftnp qeacrfiist dfpacvvrar gpaarkevti atskeeacra vqeimqdrmf
      181 gemvvveell qgeelsclcf tdgvtvasmp paqahkrlld gdqgpntggm gaycpvpqvp
      241 evllekinda ilqhvvdsmr qegtayvgvl qtglmltkdg vkilnfkcqf gdpqcqvilp
      301 llkndfyevi qatidgklcs fmpawsenst avcvvmaspg ypgdydkgme vtgllqakel
      361 glqvfhagtt lkdgrvvtsg grvlsitavk edlikalgea nrgvaairfk gatyrkdigh
      421 rgiqllkqsl gliykerrve alisdvlfhq letsvvsgtr sgshseiggf agffdlkasg
      481 yddpilvsqa kglgpklqia qvckkhdtig qdlvamcvna ilaqgaeplf flyyfacgkl
      541 dvevtetike giaeacrnag caflgremae vtgtyssgey dlagfvvgav ergqmllqlq
      601 radeedvlvg lassgihgrg fsiirkillm sslhysspap gscgektlgd illnpskmys
      661 psllpilrsg hvkafafiae eglvegisri lpehvgavld alswkipeif cwiyregnls
      721 eeemvqtfhc gigavlvvqk dlgqhvlkdi qrheeawlig kvaapchtgs hikvenllea
      781 lqlsspqhll ntvvesqnqp rknkvkvavl isgtgtnlaa lisyakepgs caqvvlvisn
      841 ksgveelrna aragiptrvi dhklygsrse fdstidrvle efavelicls gfmrvlsspf
      901 lrkwkgkiln aspslfppik dgnahqqalh sgfkvtgctv hfvleesspk avihqepvsv
      961 kaddteemls ervkeaecra fpialqlvas gavqlgadgk tywkqesqsl clqeekrdcm
     1021 ssfvamepqe tdvv
//
LOCUS       XP_053916554             926 aa            linear   VRT 09-MAR-2023
DEFINITION  trifunctional purine biosynthetic protein adenosine-3-like isoform
            X4 [Cuculus canorus].
ACCESSION   XP_053916554
VERSION     XP_053916554.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060579.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..926
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..926
                     /product="trifunctional purine biosynthetic protein
                     adenosine-3-like isoform X4"
                     /calculated_mol_wt=100386
     Region          <27..306
                     /region_name="PurD"
                     /note="Phosphoribosylamine-glycine ligase [Nucleotide
                     transport and metabolism]; COG0151"
                     /db_xref="CDD:439921"
     Region          356..653
                     /region_name="PurM"
                     /note="PurM (Aminoimidazole Ribonucleotide [AIR]
                     synthetase), one of eleven enzymes required for purine
                     biosynthesis, catalyzes the conversion of
                     formylglycinamide ribonucleotide (FGAM) and ATP to AIR,
                     ADP, and Pi, the fifth step in de novo purine
                     biosynthesis; cd02196"
                     /db_xref="CDD:100032"
     Site            order(361..365,376..379,381,383,389,411,415,421,424,427,
                     458,462,464,471..472,476,580)
                     /site_type="other"
                     /note="dimerization interface [polypeptide binding]"
                     /db_xref="CDD:100032"
     Site            order(411,456..458)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:100032"
     Region          698..880
                     /region_name="FMT_core_GART"
                     /note="Phosphoribosylglycinamide formyltransferase (GAR
                     transformylase, GART); cd08645"
                     /db_xref="CDD:187714"
     Site            order(703,708..710,781..788,793,802..805,813,833,835..836,
                     869)
                     /site_type="active"
                     /db_xref="CDD:187714"
     Site            order(708..709,782..783,803,805,869)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:187714"
     Site            order(781,784,786..788,793,802,835..836)
                     /site_type="other"
                     /note="cosubstrate binding site"
                     /db_xref="CDD:187714"
     CDS             1..926
                     /gene="LOC104064788"
                     /coded_by="XM_054060579.1:203..2983"
                     /db_xref="GeneID:104064788"
ORIGIN      
        1 mgyqqqdgkp sliprklvgl lsdfpacvvr argpaarkev tiatskeeac ravqeimqdr
       61 mfgemvvvee llqgeelscl cftdgvtvas mppaqahkrl ldgdqgpntg gmgaycpvpq
      121 vpevllekin dailqhvvds mrqegtayvg vlqtglmltk dgvkilnfkc qfgdpqcqvi
      181 lpllkndfye viqatidgkl csfmpawsen stavcvvmas pgypgdydkg mevtgllqak
      241 elglqvfhag ttlkdgrvvt sggrvlsita vkedlikalg eanrgvaair fkgatyrkdi
      301 ghrgiqllkq slgliykerr vealisdvlf hqletsvvsg trsgkisyik krgshseigg
      361 fagffdlkas gyddpilvsq akglgpklqi aqvckkhdti gqdlvamcvn ailaqgaepl
      421 fflyyfacgk ldvevtetik egiaeacrna gcaflgrema evtgtyssge ydlagfvvga
      481 vergqmllql qradeedvlv glassgihgr gfsiirkill msslhysspa pgscgektlg
      541 dillnpskmy spsllpilrs ghvkafafia eeglvegisr ilpehvgavl dalswkipei
      601 fcwiyregnl seeemvqtfh cgigavlvvq kdlgqhvlkd iqrheeawli gkvaapchtg
      661 gshikvenll ealqlsspqh llntvvesqn qprknkvkva vlisgtgtnl aalisyakep
      721 gscaqvvlvi snksgveelr naaragiptr vidhklygsr sefdstidrv leefavelic
      781 lsgfmrvlss pflrkwkgki lnaspslfpp ikdgnahqqa lhsgfkvtgc tvhfvleess
      841 pkavihqepv svkaddteem lservkeaec rafpialqlv asgavqlgad gktywkqesq
      901 slclqeekrd cmssfvamep qetdvv
//
LOCUS       XP_053916561             466 aa            linear   VRT 09-MAR-2023
DEFINITION  trifunctional purine biosynthetic protein adenosine-3-like isoform
            X5 [Cuculus canorus].
ACCESSION   XP_053916561
VERSION     XP_053916561.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060586.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..466
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..466
                     /product="trifunctional purine biosynthetic protein
                     adenosine-3-like isoform X5"
                     /calculated_mol_wt=49976
     Region          4..424
                     /region_name="PurD"
                     /note="Phosphoribosylamine-glycine ligase [Nucleotide
                     transport and metabolism]; COG0151"
                     /db_xref="CDD:439921"
     CDS             1..466
                     /gene="LOC104064788"
                     /coded_by="XM_054060586.1:307..1707"
                     /db_xref="GeneID:104064788"
ORIGIN      
        1 madrvlvigs ggrehalawk laqsphvkhv fvapgnagta dngkisnsav lvsnhtivtq
       61 fckdhniglv lvgqeallaa givddlraag vrcfgpsaka aqlasntifa kafldrhgip
      121 tarwkaftnp qeacrfiist dfpacvvrar gpaarkevti atskeeacra vqeimqdrmf
      181 gemvvveell qgeelsclcf tdgvtvasmp paqahkrlld gdqgpntggm gaycpvpqvp
      241 evllekinda ilqhvvdsmr qegtayvgvl qtglmltkdg vkilnfkcqf gdpqcqvilp
      301 llkndfyevi qatidgklcs fmpawsenst avcvvmaspg ypgdydkgme vtgllqakel
      361 glqvfhagtt lkdgrvvtsg grvlsitavk edlikalgea nrgvaairfk gatyrkdigh
      421 rgiqllkqsl gliykerrve alisdvlfhq letsvvsgtr sdctsm
//
LOCUS       XP_009565419            1003 aa            linear   VRT 09-MAR-2023
DEFINITION  trifunctional purine biosynthetic protein adenosine-3 [Cuculus
            canorus].
ACCESSION   XP_009565419
VERSION     XP_009565419.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009567124.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009565419.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1003
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1003
                     /product="trifunctional purine biosynthetic protein
                     adenosine-3"
                     /calculated_mol_wt=106556
     Region          4..427
                     /region_name="PurD"
                     /note="Phosphoribosylamine-glycine ligase [Nucleotide
                     transport and metabolism]; COG0151"
                     /db_xref="CDD:439921"
     Region          431..766
                     /region_name="PurM"
                     /note="Phosphoribosylaminoimidazole (AIR) synthetase
                     [Nucleotide transport and metabolism]; COG0150"
                     /db_xref="CDD:439920"
     Region          805..987
                     /region_name="FMT_core_GART"
                     /note="Phosphoribosylglycinamide formyltransferase (GAR
                     transformylase, GART); cd08645"
                     /db_xref="CDD:187714"
     Site            order(810,815..817,888..895,900,909..912,920,940,942..943,
                     946..947,976)
                     /site_type="active"
                     /db_xref="CDD:187714"
     Site            order(815..816,889..890,910,912,976)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:187714"
     Site            order(888,891,893..895,900,909,942..943,946..947)
                     /site_type="other"
                     /note="cosubstrate binding site"
                     /db_xref="CDD:187714"
     Site            order(909,911,947)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:187714"
     CDS             1..1003
                     /gene="GART"
                     /coded_by="XM_009567124.2:119..3130"
                     /db_xref="GeneID:104064755"
ORIGIN      
        1 madrvlvigs ggrehalawk laqsphvkhv fvapgnagta dngkisnsav svsnhaalaq
       61 fckdqdiklv vvgpevplaa givddltaag vrcfgptaka aqlessksft kafldrheip
      121 tarwksftdp kaacsfinsa nfpalvvkas glaagkgviv asnkeeacka vaeimqdktf
      181 gtagetvvve ellegeevsc lcftdgvtia pmppaqdhkr lmdgdegpnt ggmgayspap
      241 qiskellqki rdtvlqktvd gmrkegvpyf gvlyaglmlt kdgpkvlefn crfgdpecqv
      301 ilpllksdly evmqavinkk lsssmpvwfe dsaavtvvma segypgtypk gleitglpna
      361 kqlglevfha gtalkdgkvv tsggrvltvt airedlmtal qeankgvaai hfkgaiyrkd
      421 igyraiaflr qsrgltykns gvdiaagntl vqkikplaaa tsrsgcnael ggfaglfdlk
      481 aagyedpilv sgtdgvgtkl kiaqvckkhd tigqdlvamc vndilaqgae plffldyfac
      541 gkldvdvaqg viagiaeack kagcallgge taempgmypp geydlagfav gavergqmlp
      601 qleriadgdv vigvassgvh sngyslvrki vekssfdfss pvgvsgdqtl gdllltptki
      661 ysktllpvlr sghvkafahi tgggllenip rvlpesfgvv ldaltwkipe ifcwlhkegn
      721 lseeemtrtf ncgigavlvv qkelaqqvlk diqrheaawl igkvvslqkg sahvkvhnll
      781 ralqanrsls vhshiqgkiq tnkvkvavli sgtgtnleal instkkptsf aqivlvvsnk
      841 agveglrkae ragiptrvid hklyasrtef dsavdkvlqe fsveliclag fmrilsgpfv
      901 kkwegkilni hpsllpsfkg anahklvlqa gvrvtgctvh fvaeevdaga iifqeavpvk
      961 igdteetlse rvkeaehraf paalqlvasg avqvgeagki ywk
//
LOCUS       XP_053916581            1003 aa            linear   VRT 09-MAR-2023
DEFINITION  trifunctional purine biosynthetic protein adenosine-3 [Cuculus
            canorus].
ACCESSION   XP_053916581
VERSION     XP_053916581.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060606.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1003
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1003
                     /product="trifunctional purine biosynthetic protein
                     adenosine-3"
                     /calculated_mol_wt=106556
     Region          4..427
                     /region_name="PurD"
                     /note="Phosphoribosylamine-glycine ligase [Nucleotide
                     transport and metabolism]; COG0151"
                     /db_xref="CDD:439921"
     Region          431..766
                     /region_name="PurM"
                     /note="Phosphoribosylaminoimidazole (AIR) synthetase
                     [Nucleotide transport and metabolism]; COG0150"
                     /db_xref="CDD:439920"
     Region          805..987
                     /region_name="FMT_core_GART"
                     /note="Phosphoribosylglycinamide formyltransferase (GAR
                     transformylase, GART); cd08645"
                     /db_xref="CDD:187714"
     Site            order(810,815..817,888..895,900,909..912,920,940,942..943,
                     946..947,976)
                     /site_type="active"
                     /db_xref="CDD:187714"
     Site            order(815..816,889..890,910,912,976)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:187714"
     Site            order(888,891,893..895,900,909,942..943,946..947)
                     /site_type="other"
                     /note="cosubstrate binding site"
                     /db_xref="CDD:187714"
     Site            order(909,911,947)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:187714"
     CDS             1..1003
                     /gene="GART"
                     /coded_by="XM_054060606.1:146..3157"
                     /db_xref="GeneID:104064755"
ORIGIN      
        1 madrvlvigs ggrehalawk laqsphvkhv fvapgnagta dngkisnsav svsnhaalaq
       61 fckdqdiklv vvgpevplaa givddltaag vrcfgptaka aqlessksft kafldrheip
      121 tarwksftdp kaacsfinsa nfpalvvkas glaagkgviv asnkeeacka vaeimqdktf
      181 gtagetvvve ellegeevsc lcftdgvtia pmppaqdhkr lmdgdegpnt ggmgayspap
      241 qiskellqki rdtvlqktvd gmrkegvpyf gvlyaglmlt kdgpkvlefn crfgdpecqv
      301 ilpllksdly evmqavinkk lsssmpvwfe dsaavtvvma segypgtypk gleitglpna
      361 kqlglevfha gtalkdgkvv tsggrvltvt airedlmtal qeankgvaai hfkgaiyrkd
      421 igyraiaflr qsrgltykns gvdiaagntl vqkikplaaa tsrsgcnael ggfaglfdlk
      481 aagyedpilv sgtdgvgtkl kiaqvckkhd tigqdlvamc vndilaqgae plffldyfac
      541 gkldvdvaqg viagiaeack kagcallgge taempgmypp geydlagfav gavergqmlp
      601 qleriadgdv vigvassgvh sngyslvrki vekssfdfss pvgvsgdqtl gdllltptki
      661 ysktllpvlr sghvkafahi tgggllenip rvlpesfgvv ldaltwkipe ifcwlhkegn
      721 lseeemtrtf ncgigavlvv qkelaqqvlk diqrheaawl igkvvslqkg sahvkvhnll
      781 ralqanrsls vhshiqgkiq tnkvkvavli sgtgtnleal instkkptsf aqivlvvsnk
      841 agveglrkae ragiptrvid hklyasrtef dsavdkvlqe fsveliclag fmrilsgpfv
      901 kkwegkilni hpsllpsfkg anahklvlqa gvrvtgctvh fvaeevdaga iifqeavpvk
      961 igdteetlse rvkeaehraf paalqlvasg avqvgeagki ywk
//
LOCUS       XP_053916587            1003 aa            linear   VRT 09-MAR-2023
DEFINITION  trifunctional purine biosynthetic protein adenosine-3 [Cuculus
            canorus].
ACCESSION   XP_053916587
VERSION     XP_053916587.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060612.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1003
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1003
                     /product="trifunctional purine biosynthetic protein
                     adenosine-3"
                     /calculated_mol_wt=106556
     Region          4..427
                     /region_name="PurD"
                     /note="Phosphoribosylamine-glycine ligase [Nucleotide
                     transport and metabolism]; COG0151"
                     /db_xref="CDD:439921"
     Region          431..766
                     /region_name="PurM"
                     /note="Phosphoribosylaminoimidazole (AIR) synthetase
                     [Nucleotide transport and metabolism]; COG0150"
                     /db_xref="CDD:439920"
     Region          805..987
                     /region_name="FMT_core_GART"
                     /note="Phosphoribosylglycinamide formyltransferase (GAR
                     transformylase, GART); cd08645"
                     /db_xref="CDD:187714"
     Site            order(810,815..817,888..895,900,909..912,920,940,942..943,
                     946..947,976)
                     /site_type="active"
                     /db_xref="CDD:187714"
     Site            order(815..816,889..890,910,912,976)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:187714"
     Site            order(888,891,893..895,900,909,942..943,946..947)
                     /site_type="other"
                     /note="cosubstrate binding site"
                     /db_xref="CDD:187714"
     Site            order(909,911,947)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:187714"
     CDS             1..1003
                     /gene="GART"
                     /coded_by="XM_054060612.1:118..3129"
                     /db_xref="GeneID:104064755"
ORIGIN      
        1 madrvlvigs ggrehalawk laqsphvkhv fvapgnagta dngkisnsav svsnhaalaq
       61 fckdqdiklv vvgpevplaa givddltaag vrcfgptaka aqlessksft kafldrheip
      121 tarwksftdp kaacsfinsa nfpalvvkas glaagkgviv asnkeeacka vaeimqdktf
      181 gtagetvvve ellegeevsc lcftdgvtia pmppaqdhkr lmdgdegpnt ggmgayspap
      241 qiskellqki rdtvlqktvd gmrkegvpyf gvlyaglmlt kdgpkvlefn crfgdpecqv
      301 ilpllksdly evmqavinkk lsssmpvwfe dsaavtvvma segypgtypk gleitglpna
      361 kqlglevfha gtalkdgkvv tsggrvltvt airedlmtal qeankgvaai hfkgaiyrkd
      421 igyraiaflr qsrgltykns gvdiaagntl vqkikplaaa tsrsgcnael ggfaglfdlk
      481 aagyedpilv sgtdgvgtkl kiaqvckkhd tigqdlvamc vndilaqgae plffldyfac
      541 gkldvdvaqg viagiaeack kagcallgge taempgmypp geydlagfav gavergqmlp
      601 qleriadgdv vigvassgvh sngyslvrki vekssfdfss pvgvsgdqtl gdllltptki
      661 ysktllpvlr sghvkafahi tgggllenip rvlpesfgvv ldaltwkipe ifcwlhkegn
      721 lseeemtrtf ncgigavlvv qkelaqqvlk diqrheaawl igkvvslqkg sahvkvhnll
      781 ralqanrsls vhshiqgkiq tnkvkvavli sgtgtnleal instkkptsf aqivlvvsnk
      841 agveglrkae ragiptrvid hklyasrtef dsavdkvlqe fsveliclag fmrilsgpfv
      901 kkwegkilni hpsllpsfkg anahklvlqa gvrvtgctvh fvaeevdaga iifqeavpvk
      961 igdteetlse rvkeaehraf paalqlvasg avqvgeagki ywk
//
LOCUS       XP_053916592            1003 aa            linear   VRT 09-MAR-2023
DEFINITION  trifunctional purine biosynthetic protein adenosine-3 [Cuculus
            canorus].
ACCESSION   XP_053916592
VERSION     XP_053916592.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060617.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1003
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1003
                     /product="trifunctional purine biosynthetic protein
                     adenosine-3"
                     /calculated_mol_wt=106556
     Region          4..427
                     /region_name="PurD"
                     /note="Phosphoribosylamine-glycine ligase [Nucleotide
                     transport and metabolism]; COG0151"
                     /db_xref="CDD:439921"
     Region          431..766
                     /region_name="PurM"
                     /note="Phosphoribosylaminoimidazole (AIR) synthetase
                     [Nucleotide transport and metabolism]; COG0150"
                     /db_xref="CDD:439920"
     Region          805..987
                     /region_name="FMT_core_GART"
                     /note="Phosphoribosylglycinamide formyltransferase (GAR
                     transformylase, GART); cd08645"
                     /db_xref="CDD:187714"
     Site            order(810,815..817,888..895,900,909..912,920,940,942..943,
                     946..947,976)
                     /site_type="active"
                     /db_xref="CDD:187714"
     Site            order(815..816,889..890,910,912,976)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:187714"
     Site            order(888,891,893..895,900,909,942..943,946..947)
                     /site_type="other"
                     /note="cosubstrate binding site"
                     /db_xref="CDD:187714"
     Site            order(909,911,947)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:187714"
     CDS             1..1003
                     /gene="GART"
                     /coded_by="XM_054060617.1:138..3149"
                     /db_xref="GeneID:104064755"
ORIGIN      
        1 madrvlvigs ggrehalawk laqsphvkhv fvapgnagta dngkisnsav svsnhaalaq
       61 fckdqdiklv vvgpevplaa givddltaag vrcfgptaka aqlessksft kafldrheip
      121 tarwksftdp kaacsfinsa nfpalvvkas glaagkgviv asnkeeacka vaeimqdktf
      181 gtagetvvve ellegeevsc lcftdgvtia pmppaqdhkr lmdgdegpnt ggmgayspap
      241 qiskellqki rdtvlqktvd gmrkegvpyf gvlyaglmlt kdgpkvlefn crfgdpecqv
      301 ilpllksdly evmqavinkk lsssmpvwfe dsaavtvvma segypgtypk gleitglpna
      361 kqlglevfha gtalkdgkvv tsggrvltvt airedlmtal qeankgvaai hfkgaiyrkd
      421 igyraiaflr qsrgltykns gvdiaagntl vqkikplaaa tsrsgcnael ggfaglfdlk
      481 aagyedpilv sgtdgvgtkl kiaqvckkhd tigqdlvamc vndilaqgae plffldyfac
      541 gkldvdvaqg viagiaeack kagcallgge taempgmypp geydlagfav gavergqmlp
      601 qleriadgdv vigvassgvh sngyslvrki vekssfdfss pvgvsgdqtl gdllltptki
      661 ysktllpvlr sghvkafahi tgggllenip rvlpesfgvv ldaltwkipe ifcwlhkegn
      721 lseeemtrtf ncgigavlvv qkelaqqvlk diqrheaawl igkvvslqkg sahvkvhnll
      781 ralqanrsls vhshiqgkiq tnkvkvavli sgtgtnleal instkkptsf aqivlvvsnk
      841 agveglrkae ragiptrvid hklyasrtef dsavdkvlqe fsveliclag fmrilsgpfv
      901 kkwegkilni hpsllpsfkg anahklvlqa gvrvtgctvh fvaeevdaga iifqeavpvk
      961 igdteetlse rvkeaehraf paalqlvasg avqvgeagki ywk
//
LOCUS       XP_053916600            1003 aa            linear   VRT 09-MAR-2023
DEFINITION  trifunctional purine biosynthetic protein adenosine-3 [Cuculus
            canorus].
ACCESSION   XP_053916600
VERSION     XP_053916600.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060625.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1003
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1003
                     /product="trifunctional purine biosynthetic protein
                     adenosine-3"
                     /calculated_mol_wt=106556
     Region          4..427
                     /region_name="PurD"
                     /note="Phosphoribosylamine-glycine ligase [Nucleotide
                     transport and metabolism]; COG0151"
                     /db_xref="CDD:439921"
     Region          431..766
                     /region_name="PurM"
                     /note="Phosphoribosylaminoimidazole (AIR) synthetase
                     [Nucleotide transport and metabolism]; COG0150"
                     /db_xref="CDD:439920"
     Region          805..987
                     /region_name="FMT_core_GART"
                     /note="Phosphoribosylglycinamide formyltransferase (GAR
                     transformylase, GART); cd08645"
                     /db_xref="CDD:187714"
     Site            order(810,815..817,888..895,900,909..912,920,940,942..943,
                     946..947,976)
                     /site_type="active"
                     /db_xref="CDD:187714"
     Site            order(815..816,889..890,910,912,976)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:187714"
     Site            order(888,891,893..895,900,909,942..943,946..947)
                     /site_type="other"
                     /note="cosubstrate binding site"
                     /db_xref="CDD:187714"
     Site            order(909,911,947)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:187714"
     CDS             1..1003
                     /gene="GART"
                     /coded_by="XM_054060625.1:219..3230"
                     /db_xref="GeneID:104064755"
ORIGIN      
        1 madrvlvigs ggrehalawk laqsphvkhv fvapgnagta dngkisnsav svsnhaalaq
       61 fckdqdiklv vvgpevplaa givddltaag vrcfgptaka aqlessksft kafldrheip
      121 tarwksftdp kaacsfinsa nfpalvvkas glaagkgviv asnkeeacka vaeimqdktf
      181 gtagetvvve ellegeevsc lcftdgvtia pmppaqdhkr lmdgdegpnt ggmgayspap
      241 qiskellqki rdtvlqktvd gmrkegvpyf gvlyaglmlt kdgpkvlefn crfgdpecqv
      301 ilpllksdly evmqavinkk lsssmpvwfe dsaavtvvma segypgtypk gleitglpna
      361 kqlglevfha gtalkdgkvv tsggrvltvt airedlmtal qeankgvaai hfkgaiyrkd
      421 igyraiaflr qsrgltykns gvdiaagntl vqkikplaaa tsrsgcnael ggfaglfdlk
      481 aagyedpilv sgtdgvgtkl kiaqvckkhd tigqdlvamc vndilaqgae plffldyfac
      541 gkldvdvaqg viagiaeack kagcallgge taempgmypp geydlagfav gavergqmlp
      601 qleriadgdv vigvassgvh sngyslvrki vekssfdfss pvgvsgdqtl gdllltptki
      661 ysktllpvlr sghvkafahi tgggllenip rvlpesfgvv ldaltwkipe ifcwlhkegn
      721 lseeemtrtf ncgigavlvv qkelaqqvlk diqrheaawl igkvvslqkg sahvkvhnll
      781 ralqanrsls vhshiqgkiq tnkvkvavli sgtgtnleal instkkptsf aqivlvvsnk
      841 agveglrkae ragiptrvid hklyasrtef dsavdkvlqe fsveliclag fmrilsgpfv
      901 kkwegkilni hpsllpsfkg anahklvlqa gvrvtgctvh fvaeevdaga iifqeavpvk
      961 igdteetlse rvkeaehraf paalqlvasg avqvgeagki ywk
//
LOCUS       XP_053916608            1003 aa            linear   VRT 09-MAR-2023
DEFINITION  trifunctional purine biosynthetic protein adenosine-3 [Cuculus
            canorus].
ACCESSION   XP_053916608
VERSION     XP_053916608.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060633.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1003
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1003
                     /product="trifunctional purine biosynthetic protein
                     adenosine-3"
                     /calculated_mol_wt=106556
     Region          4..427
                     /region_name="PurD"
                     /note="Phosphoribosylamine-glycine ligase [Nucleotide
                     transport and metabolism]; COG0151"
                     /db_xref="CDD:439921"
     Region          431..766
                     /region_name="PurM"
                     /note="Phosphoribosylaminoimidazole (AIR) synthetase
                     [Nucleotide transport and metabolism]; COG0150"
                     /db_xref="CDD:439920"
     Region          805..987
                     /region_name="FMT_core_GART"
                     /note="Phosphoribosylglycinamide formyltransferase (GAR
                     transformylase, GART); cd08645"
                     /db_xref="CDD:187714"
     Site            order(810,815..817,888..895,900,909..912,920,940,942..943,
                     946..947,976)
                     /site_type="active"
                     /db_xref="CDD:187714"
     Site            order(815..816,889..890,910,912,976)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:187714"
     Site            order(888,891,893..895,900,909,942..943,946..947)
                     /site_type="other"
                     /note="cosubstrate binding site"
                     /db_xref="CDD:187714"
     Site            order(909,911,947)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:187714"
     CDS             1..1003
                     /gene="GART"
                     /coded_by="XM_054060633.1:23..3034"
                     /db_xref="GeneID:104064755"
ORIGIN      
        1 madrvlvigs ggrehalawk laqsphvkhv fvapgnagta dngkisnsav svsnhaalaq
       61 fckdqdiklv vvgpevplaa givddltaag vrcfgptaka aqlessksft kafldrheip
      121 tarwksftdp kaacsfinsa nfpalvvkas glaagkgviv asnkeeacka vaeimqdktf
      181 gtagetvvve ellegeevsc lcftdgvtia pmppaqdhkr lmdgdegpnt ggmgayspap
      241 qiskellqki rdtvlqktvd gmrkegvpyf gvlyaglmlt kdgpkvlefn crfgdpecqv
      301 ilpllksdly evmqavinkk lsssmpvwfe dsaavtvvma segypgtypk gleitglpna
      361 kqlglevfha gtalkdgkvv tsggrvltvt airedlmtal qeankgvaai hfkgaiyrkd
      421 igyraiaflr qsrgltykns gvdiaagntl vqkikplaaa tsrsgcnael ggfaglfdlk
      481 aagyedpilv sgtdgvgtkl kiaqvckkhd tigqdlvamc vndilaqgae plffldyfac
      541 gkldvdvaqg viagiaeack kagcallgge taempgmypp geydlagfav gavergqmlp
      601 qleriadgdv vigvassgvh sngyslvrki vekssfdfss pvgvsgdqtl gdllltptki
      661 ysktllpvlr sghvkafahi tgggllenip rvlpesfgvv ldaltwkipe ifcwlhkegn
      721 lseeemtrtf ncgigavlvv qkelaqqvlk diqrheaawl igkvvslqkg sahvkvhnll
      781 ralqanrsls vhshiqgkiq tnkvkvavli sgtgtnleal instkkptsf aqivlvvsnk
      841 agveglrkae ragiptrvid hklyasrtef dsavdkvlqe fsveliclag fmrilsgpfv
      901 kkwegkilni hpsllpsfkg anahklvlqa gvrvtgctvh fvaeevdaga iifqeavpvk
      961 igdteetlse rvkeaehraf paalqlvasg avqvgeagki ywk
//
LOCUS       XP_009555288            1022 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium/potassium-transporting ATPase subunit alpha-1 [Cuculus
            canorus].
ACCESSION   XP_009555288
VERSION     XP_009555288.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556993.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555288.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1022
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1022
                     /product="sodium/potassium-transporting ATPase subunit
                     alpha-1"
                     /calculated_mol_wt=112351
     Region          28..1022
                     /region_name="ATPase-IIC_X-K"
                     /note="sodium or proton efflux -- potassium uptake
                     antiporter, P-type ATPase, alpha subunit; TIGR01106"
                     /db_xref="CDD:273445"
     CDS             1..1022
                     /gene="ATP1A1"
                     /coded_by="XM_009556993.2:175..3243"
                     /db_xref="GeneID:104055812"
ORIGIN      
        1 mgkgagrdky eptatsehgt kkkkgkkerd meelkkevsm ddhklsldel hrkygtdlsr
       61 gltsaraaei lardgpnslt pppttpewvk fcrqlfggfs lllwigailc fmaygiesls
      121 egggnndnly lgvvlaavvi itgcfsyyqe aksskimesf knmvpqqalv irngekmsin
      181 aegvvvgdlv evkggdripa dlriisahgc kvdnssltge sepqtrspdf snenpletrn
      241 iaffstncve gtargvvist gdrtvmgria slasgleggk tpiateiehf ihlitgvavf
      301 lgvtffilsl ilkytwleav ifligiivan vpegllatvt vcltltakrm arknclvknl
      361 eavetlgsts ticsdktgtl tqnrmtvahm wfdnqihead ttenqtgasf dkssatwtal
      421 srvaglcnra vfqanqenvp ilkravagda sesallkcie lccgsvkemr drypkvveip
      481 fnstnkyqls ihknanpses ryllvmkgap erildrcsti lihgkeqpld eemkdafqna
      541 ylelgglger vlgfchlalp ddqfpegfqf dtddlnfpvd klcfvglmsm idppraavpd
      601 avgkcrsagi kvimvtgdhp itakaiakgv giisegnetv ediaarlnip vsqvnprdak
      661 acvvhgsdlk dmtseqlddi lmhhteivfa rtspqqklii vegcqrqgai vavtgdgvnd
      721 spalkkadig vamgiagsdv skqaadmill ddnfasivtg veegrlifdn lkksiaytlt
      781 snipeitpfl ifivaniplp lgtvtilcid lgtdmvpais layeqaesdi mkrqprnpkt
      841 dklvnerlis maygqigmiq alggfftyfv imaengfwps gllgiriqwd drwvndveds
      901 ygqqwtyeqr kiveftchta ffvsivvvqw adliicktrr nsvfqqgmkn kilifglfee
      961 talaaflsyc pgmdvalrmy plkptwwfca fpysllifly devrkliirr npggwveket
     1021 yy
//
LOCUS       XP_053916628             574 aa            linear   VRT 09-MAR-2023
DEFINITION  nectin-3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053916628
VERSION     XP_053916628.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060653.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..574
                     /product="nectin-3 isoform X1"
                     /calculated_mol_wt=63329
     Region          62..171
                     /region_name="IgV_1_Nectin-3_like"
                     /note="First immunoglobulin variable (IgV) domain of
                     nectin-3 (also known as poliovirus receptor related
                     protein 3), and similar domains; cd05887"
                     /db_xref="CDD:409470"
     Region          62..85
                     /region_name="FR1"
                     /note="FR1 [structural motif]"
                     /db_xref="CDD:409470"
     Region          62..66
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409470"
     Region          68..72
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409470"
     Site            order(76..83,90..98,105..117,135..141,146..160,163..171)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:409470"
     Region          77..85
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409470"
     Region          86..90
                     /region_name="CDR1"
                     /note="CDR1 [structural motif]"
                     /db_xref="CDD:409470"
     Region          91..97
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409470"
     Region          92..97
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409470"
     Region          98..117
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409470"
     Region          107..112
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409470"
     Region          114..118
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409470"
     Region          118..156
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409470"
     Region          125..129
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409470"
     Region          134..141
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409470"
     Region          148..156
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409470"
     Region          157..160
                     /region_name="CDR3"
                     /note="CDR3 [structural motif]"
                     /db_xref="CDD:409470"
     Region          160..170
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409470"
     Region          161..171
                     /region_name="FR4"
                     /note="FR4 [structural motif]"
                     /db_xref="CDD:409470"
     Region          174..269
                     /region_name="IgC1_2_Nectin-3-4_like"
                     /note="Second immunoglobulin (Ig) domain of nectin-3 and
                     nectin-4 (poliovirus receptor related protein 4), and
                     similar domains; member of the C1-set of Ig superfamily
                     (IgSF) domains; cd07704"
                     /db_xref="CDD:409501"
     Region          174..180
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409501"
     Region          193..200
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409501"
     Region          205..211
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409501"
     Region          213..215
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409501"
     Region          217..224
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409501"
     Region          229..237
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409501"
     Region          247..254
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409501"
     Region          260..266
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409501"
     Region          273..359
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          291..295
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409524"
     Region          305..309
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409524"
     Region          324..329
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409524"
     Region          339..344
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409524"
     Region          354..357
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409524"
     CDS             1..574
                     /gene="NECTIN3"
                     /coded_by="XM_054060653.1:235..1959"
                     /db_xref="GeneID:104056000"
ORIGIN      
        1 magaadeslp spplparrel saagggggga slqrrrrvrp avspglgllg lvfsrfccsa
       61 lagpvvdphv tavwgkkval kciidvneti tqvswekvhg knsktiavhh peygisvqge
      121 yqervsfkny sltdatiilk nvsfsdagey ickavtfplg ntqssttvtv lvepvvslmk
      181 gpnplidgan rtiaatctaa tgkpaaeidw egglgemess stlfpnetvt vvsqymivpt
      241 rfargrritc ivrhpaleke irythvldiq yapevsvtgy dgnwfigren vqlrcnadan
      301 plpmefmwtr ldgqwpegll sinntlqfss pltynytgty ickvtnslgq rsdqktiyil
      361 dmpfkqtssv avagavigav lalfiitifv tvlltprkkr psyldkvidl ppthkpascd
      421 eralsvpqke amlhkehfal qsqyrekdvg ilphmqavng rhlsceaeep qeqdglqhmy
      481 pvyqrtyykn wssrypqnsg pgtvyinpre hyicgffrqr rvvpvealel kasivtatad
      541 mflfeelklw gkeggrknai neaiiaffef vkia
//
LOCUS       XP_053916638             557 aa            linear   VRT 09-MAR-2023
DEFINITION  nectin-3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053916638
VERSION     XP_053916638.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060663.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..557
                     /product="nectin-3 isoform X2"
                     /calculated_mol_wt=61562
     Region          62..171
                     /region_name="IgV_1_Nectin-3_like"
                     /note="First immunoglobulin variable (IgV) domain of
                     nectin-3 (also known as poliovirus receptor related
                     protein 3), and similar domains; cd05887"
                     /db_xref="CDD:409470"
     Region          62..85
                     /region_name="FR1"
                     /note="FR1 [structural motif]"
                     /db_xref="CDD:409470"
     Region          62..66
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409470"
     Region          68..72
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409470"
     Site            order(76..83,90..98,105..117,135..141,146..160,163..171)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:409470"
     Region          77..85
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409470"
     Region          86..90
                     /region_name="CDR1"
                     /note="CDR1 [structural motif]"
                     /db_xref="CDD:409470"
     Region          91..97
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409470"
     Region          92..97
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409470"
     Region          98..117
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409470"
     Region          107..112
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409470"
     Region          114..118
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409470"
     Region          118..156
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409470"
     Region          125..129
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409470"
     Region          134..141
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409470"
     Region          148..156
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409470"
     Region          157..160
                     /region_name="CDR3"
                     /note="CDR3 [structural motif]"
                     /db_xref="CDD:409470"
     Region          160..170
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409470"
     Region          161..171
                     /region_name="FR4"
                     /note="FR4 [structural motif]"
                     /db_xref="CDD:409470"
     Region          174..269
                     /region_name="IgC1_2_Nectin-3-4_like"
                     /note="Second immunoglobulin (Ig) domain of nectin-3 and
                     nectin-4 (poliovirus receptor related protein 4), and
                     similar domains; member of the C1-set of Ig superfamily
                     (IgSF) domains; cd07704"
                     /db_xref="CDD:409501"
     Region          174..180
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409501"
     Region          193..200
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409501"
     Region          205..211
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409501"
     Region          213..215
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409501"
     Region          217..224
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409501"
     Region          229..237
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409501"
     Region          247..254
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409501"
     Region          260..266
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409501"
     Region          273..359
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          291..295
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409524"
     Region          305..309
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409524"
     Region          324..329
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409524"
     Region          339..344
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409524"
     Region          354..357
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409524"
     CDS             1..557
                     /gene="NECTIN3"
                     /coded_by="XM_054060663.1:236..1909"
                     /db_xref="GeneID:104056000"
ORIGIN      
        1 magaadeslp spplparrel saagggggga slqrrrrvrp avspglgllg lvfsrfccsa
       61 lagpvvdphv tavwgkkval kciidvneti tqvswekvhg knsktiavhh peygisvqge
      121 yqervsfkny sltdatiilk nvsfsdagey ickavtfplg ntqssttvtv lvepvvslmk
      181 gpnplidgan rtiaatctaa tgkpaaeidw egglgemess stlfpnetvt vvsqymivpt
      241 rfargrritc ivrhpaleke irythvldiq yapevsvtgy dgnwfigren vqlrcnadan
      301 plpmefmwtr ldgqwpegll sinntlqfss pltynytgty ickvtnslgq rsdqktiyil
      361 dppttttrlp tvpwhpstdg itglateprv idfatstlpa mqqdtwgtii gsavggalll
      421 ilvsvlvgii cyrrrrtfrg dyfaknyipp sdmqkesqid vlqsddvdsy pdslkkeikh
      481 pmdiliskdy ledpekaewn nidninryqe ryerpmdyye sgtlgmkymg gecyddneed
      541 fvshidgsvi srrewyv
//
LOCUS       XP_053916657             469 aa            linear   VRT 09-MAR-2023
DEFINITION  nectin-3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053916657
VERSION     XP_053916657.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060682.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..469
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..469
                     /product="nectin-3 isoform X3"
                     /calculated_mol_wt=51180
     Region          62..171
                     /region_name="IgV_1_Nectin-3_like"
                     /note="First immunoglobulin variable (IgV) domain of
                     nectin-3 (also known as poliovirus receptor related
                     protein 3), and similar domains; cd05887"
                     /db_xref="CDD:409470"
     Region          62..85
                     /region_name="FR1"
                     /note="FR1 [structural motif]"
                     /db_xref="CDD:409470"
     Region          62..66
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409470"
     Region          68..72
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409470"
     Site            order(76..83,90..98,105..117,135..141,146..160,163..171)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:409470"
     Region          77..85
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409470"
     Region          86..90
                     /region_name="CDR1"
                     /note="CDR1 [structural motif]"
                     /db_xref="CDD:409470"
     Region          91..97
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409470"
     Region          92..97
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409470"
     Region          98..117
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409470"
     Region          107..112
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409470"
     Region          114..118
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409470"
     Region          118..156
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409470"
     Region          125..129
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409470"
     Region          134..141
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409470"
     Region          148..156
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409470"
     Region          157..160
                     /region_name="CDR3"
                     /note="CDR3 [structural motif]"
                     /db_xref="CDD:409470"
     Region          160..170
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409470"
     Region          161..171
                     /region_name="FR4"
                     /note="FR4 [structural motif]"
                     /db_xref="CDD:409470"
     Region          174..269
                     /region_name="IgC1_2_Nectin-3-4_like"
                     /note="Second immunoglobulin (Ig) domain of nectin-3 and
                     nectin-4 (poliovirus receptor related protein 4), and
                     similar domains; member of the C1-set of Ig superfamily
                     (IgSF) domains; cd07704"
                     /db_xref="CDD:409501"
     Region          174..180
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409501"
     Region          193..200
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409501"
     Region          205..211
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409501"
     Region          213..215
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409501"
     Region          217..224
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409501"
     Region          229..237
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409501"
     Region          247..254
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409501"
     Region          260..266
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409501"
     Region          273..359
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          291..295
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409524"
     Region          305..309
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409524"
     Region          324..329
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409524"
     Region          339..344
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409524"
     Region          354..357
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409524"
     CDS             1..469
                     /gene="NECTIN3"
                     /coded_by="XM_054060682.1:234..1643"
                     /db_xref="GeneID:104056000"
ORIGIN      
        1 magaadeslp spplparrel saagggggga slqrrrrvrp avspglgllg lvfsrfccsa
       61 lagpvvdphv tavwgkkval kciidvneti tqvswekvhg knsktiavhh peygisvqge
      121 yqervsfkny sltdatiilk nvsfsdagey ickavtfplg ntqssttvtv lvepvvslmk
      181 gpnplidgan rtiaatctaa tgkpaaeidw egglgemess stlfpnetvt vvsqymivpt
      241 rfargrritc ivrhpaleke irythvldiq yapevsvtgy dgnwfigren vqlrcnadan
      301 plpmefmwtr ldgqwpegll sinntlqfss pltynytgty ickvtnslgq rsdqktiyil
      361 dmpfkqtssv avagavigav lalfiitifv tvlltprkkr psyldkvidl ppthkpascd
      421 eralsvpqke amlhtrtrln keeikyfekk tpsamthlme glhsakllf
//
LOCUS       XP_053916662             444 aa            linear   VRT 09-MAR-2023
DEFINITION  nectin-3 isoform X4 [Cuculus canorus].
ACCESSION   XP_053916662
VERSION     XP_053916662.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060687.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..444
                     /product="nectin-3 isoform X4"
                     /calculated_mol_wt=48202
     Region          62..171
                     /region_name="IgV_1_Nectin-3_like"
                     /note="First immunoglobulin variable (IgV) domain of
                     nectin-3 (also known as poliovirus receptor related
                     protein 3), and similar domains; cd05887"
                     /db_xref="CDD:409470"
     Region          62..85
                     /region_name="FR1"
                     /note="FR1 [structural motif]"
                     /db_xref="CDD:409470"
     Region          62..66
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409470"
     Region          68..72
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409470"
     Site            order(76..83,90..98,105..117,135..141,146..160,163..171)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:409470"
     Region          77..85
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409470"
     Region          86..90
                     /region_name="CDR1"
                     /note="CDR1 [structural motif]"
                     /db_xref="CDD:409470"
     Region          91..97
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409470"
     Region          92..97
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409470"
     Region          98..117
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409470"
     Region          107..112
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409470"
     Region          114..118
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409470"
     Region          118..156
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409470"
     Region          125..129
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409470"
     Region          134..141
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409470"
     Region          148..156
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409470"
     Region          157..160
                     /region_name="CDR3"
                     /note="CDR3 [structural motif]"
                     /db_xref="CDD:409470"
     Region          160..170
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409470"
     Region          161..171
                     /region_name="FR4"
                     /note="FR4 [structural motif]"
                     /db_xref="CDD:409470"
     Region          174..269
                     /region_name="IgC1_2_Nectin-3-4_like"
                     /note="Second immunoglobulin (Ig) domain of nectin-3 and
                     nectin-4 (poliovirus receptor related protein 4), and
                     similar domains; member of the C1-set of Ig superfamily
                     (IgSF) domains; cd07704"
                     /db_xref="CDD:409501"
     Region          174..180
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409501"
     Region          193..200
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409501"
     Region          205..211
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409501"
     Region          213..215
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409501"
     Region          217..224
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409501"
     Region          229..237
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409501"
     Region          247..254
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409501"
     Region          260..266
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409501"
     Region          273..359
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          291..295
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409524"
     Region          305..309
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409524"
     Region          324..329
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409524"
     Region          339..344
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409524"
     Region          354..357
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409524"
     CDS             1..444
                     /gene="NECTIN3"
                     /coded_by="XM_054060687.1:231..1565"
                     /db_xref="GeneID:104056000"
ORIGIN      
        1 magaadeslp spplparrel saagggggga slqrrrrvrp avspglgllg lvfsrfccsa
       61 lagpvvdphv tavwgkkval kciidvneti tqvswekvhg knsktiavhh peygisvqge
      121 yqervsfkny sltdatiilk nvsfsdagey ickavtfplg ntqssttvtv lvepvvslmk
      181 gpnplidgan rtiaatctaa tgkpaaeidw egglgemess stlfpnetvt vvsqymivpt
      241 rfargrritc ivrhpaleke irythvldiq yapevsvtgy dgnwfigren vqlrcnadan
      301 plpmefmwtr ldgqwpegll sinntlqfss pltynytgty ickvtnslgq rsdqktiyil
      361 dmpfkqtssv avagavigav lalfiitifv tvlltprkkr psyldkvidl ppthkpascd
      421 eralsvpqke amlhvfelhl lpgf
//
LOCUS       XP_009563858             581 aa            linear   VRT 09-MAR-2023
DEFINITION  CTP synthase 2 [Cuculus canorus].
ACCESSION   XP_009563858
VERSION     XP_009563858.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565563.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009563858.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..581
                     /product="CTP synthase 2"
                     /calculated_mol_wt=65350
     Region          1..556
                     /region_name="PLN02327"
                     /note="CTP synthase"
                     /db_xref="CDD:215186"
     CDS             1..581
                     /gene="CTPS2"
                     /coded_by="XM_009565563.2:1..1746"
                     /db_xref="GeneID:104063394"
ORIGIN      
        1 mkyilvtggv isgigkgiia ssigtilksc glrvtaikid pyinidagtf spyehgevfv
       61 lndggevdld lgnyerfldi nlykdnnitt gkiyqhvink erhgdylgkt vqvvphitda
      121 vqewvmnqak vpvdddrkep qicvielggt igdiegmpfv eafrqfqfka krenfcnihv
      181 slvpqpnatg eqktkptqns vralrglgls pdlivcrsak piemavkeki smfchvepeq
      241 vifihdvsst yrvpilleeq giikyfkqrl dlpiddhpsd llmkwkkmad ryerllkvcs
      301 ialvgkytkl sdcyasvfka lehsalainh kldlmyidst elehsteven svryhqawhk
      361 lckadgilvp ggfgirgteg klqaiswart kkkpflgvcl gmqlavvefa rnclnwedan
      421 stefdpdtkn pvvidmpehn pgdmggtmrl gkrrtvfktq nsvlrklygd emfveerhrh
      481 ryevnpelth cfeekglkfv ghdtegnrme iielenhpyf vgvqfhpefs srpmkpsppy
      541 lglllaatgt lnaylqrgck lspsdsysdl sddsspeket s
//
LOCUS       XP_009563883             355 aa            linear   VRT 09-MAR-2023
DEFINITION  synapse-associated protein 1 [Cuculus canorus].
ACCESSION   XP_009563883
VERSION     XP_009563883.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565588.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009563883.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..355
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..355
                     /product="synapse-associated protein 1"
                     /calculated_mol_wt=40153
     Region          163..216
                     /region_name="BSD"
                     /note="BSD domain; pfam03909"
                     /db_xref="CDD:461089"
     CDS             1..355
                     /gene="SYAP1"
                     /coded_by="XM_009565588.2:66..1133"
                     /db_xref="GeneID:104063416"
ORIGIN      
        1 mlrglgswlg lerggeekll paeersssae eeevaepavq gsegaelqvd seallgqakg
       61 lgsylfnfat aatkkisdsv aetaqtikks veegkidsii dktiigdfqk eqkkfvqeqq
      121 tkkseaavpp wvdsndeeti qqqilalsad krnflrdppa gvqfnfdfdq mypvamvmlq
      181 edellnrmrf dlvpkhvkee vfwrnyfyrv slikqsaqlt alaaqqqaag keenkgreed
      241 sqlketvrpk tppvtikpqi ksqedeeeis tspgvsefvs dafdacnlnq edlrkemeql
      301 vlgekreets vveeetadwe kelqqqlqey evvtesekpd enwdkeieki lqeen
//
LOCUS       XP_053916698            1419 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: B-cell CLL/lymphoma 9 protein [Cuculus
            canorus].
ACCESSION   XP_053916698
VERSION     XP_053916698.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060723.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1419
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1419
                     /product="LOW QUALITY PROTEIN: B-cell CLL/lymphoma 9
                     protein"
                     /calculated_mol_wt=148713
     Region          347..383
                     /region_name="BCL9"
                     /note="B-cell lymphoma 9 protein; pfam11502"
                     /db_xref="CDD:431912"
     Region          <568..1182
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <1303..1394
                     /region_name="PABP-1234"
                     /note="polyadenylate binding protein, human types 1, 2, 3,
                     4 family; TIGR01628"
                     /db_xref="CDD:130689"
     CDS             1..1419
                     /gene="BCL9"
                     /coded_by="XM_054060723.1:542..4801"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 2 codons"
                     /db_xref="GeneID:104055986"
ORIGIN      
        1 mhssnpkvrn spsgntqssp kskqevmvrp ptvmspsgnp qldskfsnqg kqggstsqsq
       61 pspcdpksgg hppkvlpgpg gsmglkngsg ngakgkgkre rsisadsfeq reagtpnedp
      121 eikdcnssdh vksqesqhtp hsmtpsnasa prsstpshgl tatlepasgq ktpskvvyvf
      181 stemankaae avlkgqveti vsfhiqnisn skaerntvpl npqitalrte skplpqpqpp
      241 aaqdqnppqn akmqptppvs apvpnplppp cpidqdspsv eskvmsvgsp anstplqtea
      301 fgqsstpnnr avspvsqgsn ssaadpkgpp qqvsggdpss lgenpdglsq eqlehrersl
      361 qtlrdiqrml fpdekefagg qsggpppnag vldgpqkkte gpiqammaqs qslgkgsgsr
      421 tdggapfgpq ghrdmpfspd emgpppmnsq sgpigpdhld hmtpeqvawl klqqefyeek
      481 rrkqeqvvvq qcslqdmmvh qhgprgvvrg ppppyqmapg egwgpggpep fpegmnmshs
      541 lpprgmaphp nmpgsqmrlp gfagmmnpdm egpsvpnpss rpglsgvswp ddvpkipdgr
      601 nfppgqgvfs gpgrgerfpn pqglpeelyq qqlaekqmgl ppglnmegir pgmeinrmmp
      661 sqrhmepgnn pifprmpveg pmspsrgdfp kgippqmgss relefgmgps smkgdmgmnv
      721 smgsnpplvp qklreagvgp eemmklrpgv semlssqqkm vplpfgehpq qeygmgprpf
      781 lpmsqgpgvg lrnlreqigp dqrtsnrlsh mpplplnpts npnslntapp aqrslgrkpl
      841 disaagqvhs pginplkspt mrqvqspmmg spsgnlkspq tpsqlagmla gptaaaaaas
      901 iksppilgsa aaspvhlksp slpapspgwt sspkpplqsp gippnhkasl tmsspamlgn
      961 vesggpppst vsqsapvtlp gnlpssspyt mppeptlsqn plsimmsrms kfampsstpl
     1021 yhdaiktvas sdddsppars pnlpsmnsvp gmginsqnpr isgpnpvgpm ptlspmgmtq
     1081 plshnnqmps pnamgpnipp hgvpvgpglm shnpmmghgs qespmvpqgr lgfpqgfppv
     1141 qsppqqvpfp hngpsggqgn fpagmgfhge gplgrptnlp qsstdpalck tggpggpdsf
     1201 tvlgnnmpsv ftdpelqevi rpgatgipef dlsriipsek psqtlqyfpr gevpgrkqpq
     1261 gpgpgfshmq gmigeqtprm gltlpgmgap gpvgtpdipl gtappmpghn pmrppaflqq
     1321 gmmgphhrmm spaqtampgq palmsnpvam ipgkdrapag lyshpgpvgs pgmmmsmqgm
     1381 mgpqqnimip sqmrprgmaa dvgmggfsqg pgnpgnmmf
//
LOCUS       XP_053916712             269 aa            linear   VRT 09-MAR-2023
DEFINITION  myelin protein zero-like protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053916712
VERSION     XP_053916712.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060737.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..269
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..269
                     /product="myelin protein zero-like protein 1 isoform X1"
                     /calculated_mol_wt=28626
     Region          38..153
                     /region_name="IgV_P0-like"
                     /note="Immunoglobulin (Ig)-like domain of protein zero
                     (P0) and similar proteins; cd05715"
                     /db_xref="CDD:409380"
     Site            order(38,40,52,60,104,107,122..123)
                     /site_type="other"
                     /note="tetramer interface [polypeptide binding]"
                     /db_xref="CDD:409380"
     Region          38..60
                     /region_name="FR1"
                     /note="FR1 [structural motif]"
                     /db_xref="CDD:409380"
     Region          38..41
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409380"
     Region          43..49
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409380"
     Region          51..61
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409380"
     Region          61..69
                     /region_name="CDR1"
                     /note="CDR1 [structural motif]"
                     /db_xref="CDD:409380"
     Region          69..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409380"
     Region          70..82
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409380"
     Region          83..97
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409380"
     Region          84..90
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409380"
     Region          92..97
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409380"
     Region          102..136
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409380"
     Region          105..111
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409380"
     Region          115..123
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409380"
     Region          130..137
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409380"
     Region          138..144
                     /region_name="CDR3"
                     /note="CDR3 [structural motif]"
                     /db_xref="CDD:409380"
     Region          145..153
                     /region_name="FR4"
                     /note="FR4 [structural motif]"
                     /db_xref="CDD:409380"
     Region          145..153
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409380"
     CDS             1..269
                     /gene="MPZL1"
                     /coded_by="XM_054060737.1:29..838"
                     /db_xref="GeneID:104055976"
ORIGIN      
        1 mgarggagrt maagaarlpg sawllaaala avrvsavevs tpeeifveng tdaklpctft
       61 svevissaas vswsfqpega atrisffyyf ngkpylgkdi pfkdrvtwtg dlnkkdasis
      121 isnvqfrdng tyicdvknpp divvkpgeir vrvvekdslp afpiamvagi vigtvtglsp
      181 lisiivclvi rknnskkrys gcstseslms pvkqapqksp sdteglvniv parlhqgpvi
      241 yaqldhsggq hsdkinkses vvyadirkn
//
LOCUS       XP_053916722             211 aa            linear   VRT 09-MAR-2023
DEFINITION  myelin protein zero-like protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053916722
VERSION     XP_053916722.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060747.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..211
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..211
                     /product="myelin protein zero-like protein 1 isoform X2"
                     /calculated_mol_wt=22383
     Region          38..153
                     /region_name="IgV_P0-like"
                     /note="Immunoglobulin (Ig)-like domain of protein zero
                     (P0) and similar proteins; cd05715"
                     /db_xref="CDD:409380"
     Site            order(38,40,52,60,104,107,122..123)
                     /site_type="other"
                     /note="tetramer interface [polypeptide binding]"
                     /db_xref="CDD:409380"
     Region          38..60
                     /region_name="FR1"
                     /note="FR1 [structural motif]"
                     /db_xref="CDD:409380"
     Region          38..41
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409380"
     Region          43..49
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409380"
     Region          51..61
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409380"
     Region          61..69
                     /region_name="CDR1"
                     /note="CDR1 [structural motif]"
                     /db_xref="CDD:409380"
     Region          69..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409380"
     Region          70..82
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409380"
     Region          83..97
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409380"
     Region          84..90
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409380"
     Region          92..97
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409380"
     Region          102..136
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409380"
     Region          105..111
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409380"
     Region          115..123
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409380"
     Region          130..137
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409380"
     Region          138..144
                     /region_name="CDR3"
                     /note="CDR3 [structural motif]"
                     /db_xref="CDD:409380"
     Region          145..153
                     /region_name="FR4"
                     /note="FR4 [structural motif]"
                     /db_xref="CDD:409380"
     Region          145..153
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409380"
     CDS             1..211
                     /gene="MPZL1"
                     /coded_by="XM_054060747.1:29..664"
                     /db_xref="GeneID:104055976"
ORIGIN      
        1 mgarggagrt maagaarlpg sawllaaala avrvsavevs tpeeifveng tdaklpctft
       61 svevissaas vswsfqpega atrisffyyf ngkpylgkdi pfkdrvtwtg dlnkkdasis
      121 isnvqfrdng tyicdvknpp divvkpgeir vrvvekdslp afpiamvagi vigtvtglsp
      181 lisiivclvi rknnskkrys gdpdidarlg m
//
LOCUS       XP_053916730             211 aa            linear   VRT 09-MAR-2023
DEFINITION  myelin protein zero-like protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053916730
VERSION     XP_053916730.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060755.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..211
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..211
                     /product="myelin protein zero-like protein 1 isoform X2"
                     /calculated_mol_wt=22383
     Region          38..153
                     /region_name="IgV_P0-like"
                     /note="Immunoglobulin (Ig)-like domain of protein zero
                     (P0) and similar proteins; cd05715"
                     /db_xref="CDD:409380"
     Site            order(38,40,52,60,104,107,122..123)
                     /site_type="other"
                     /note="tetramer interface [polypeptide binding]"
                     /db_xref="CDD:409380"
     Region          38..60
                     /region_name="FR1"
                     /note="FR1 [structural motif]"
                     /db_xref="CDD:409380"
     Region          38..41
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409380"
     Region          43..49
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409380"
     Region          51..61
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409380"
     Region          61..69
                     /region_name="CDR1"
                     /note="CDR1 [structural motif]"
                     /db_xref="CDD:409380"
     Region          69..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409380"
     Region          70..82
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409380"
     Region          83..97
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409380"
     Region          84..90
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409380"
     Region          92..97
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409380"
     Region          102..136
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409380"
     Region          105..111
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409380"
     Region          115..123
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409380"
     Region          130..137
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409380"
     Region          138..144
                     /region_name="CDR3"
                     /note="CDR3 [structural motif]"
                     /db_xref="CDD:409380"
     Region          145..153
                     /region_name="FR4"
                     /note="FR4 [structural motif]"
                     /db_xref="CDD:409380"
     Region          145..153
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409380"
     CDS             1..211
                     /gene="MPZL1"
                     /coded_by="XM_054060755.1:29..664"
                     /db_xref="GeneID:104055976"
ORIGIN      
        1 mgarggagrt maagaarlpg sawllaaala avrvsavevs tpeeifveng tdaklpctft
       61 svevissaas vswsfqpega atrisffyyf ngkpylgkdi pfkdrvtwtg dlnkkdasis
      121 isnvqfrdng tyicdvknpp divvkpgeir vrvvekdslp afpiamvagi vigtvtglsp
      181 lisiivclvi rknnskkrys gdpdidarlg m
//
LOCUS       XP_053916740             208 aa            linear   VRT 09-MAR-2023
DEFINITION  myelin protein zero-like protein 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053916740
VERSION     XP_053916740.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060765.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..208
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..208
                     /product="myelin protein zero-like protein 1 isoform X3"
                     /calculated_mol_wt=22076
     Region          38..153
                     /region_name="IgV_P0-like"
                     /note="Immunoglobulin (Ig)-like domain of protein zero
                     (P0) and similar proteins; cd05715"
                     /db_xref="CDD:409380"
     Site            order(38,40,52,60,104,107,122..123)
                     /site_type="other"
                     /note="tetramer interface [polypeptide binding]"
                     /db_xref="CDD:409380"
     Region          38..60
                     /region_name="FR1"
                     /note="FR1 [structural motif]"
                     /db_xref="CDD:409380"
     Region          38..41
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409380"
     Region          43..49
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409380"
     Region          51..61
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409380"
     Region          61..69
                     /region_name="CDR1"
                     /note="CDR1 [structural motif]"
                     /db_xref="CDD:409380"
     Region          69..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409380"
     Region          70..82
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409380"
     Region          83..97
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409380"
     Region          84..90
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409380"
     Region          92..97
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409380"
     Region          102..136
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409380"
     Region          105..111
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409380"
     Region          115..123
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409380"
     Region          130..137
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409380"
     Region          138..144
                     /region_name="CDR3"
                     /note="CDR3 [structural motif]"
                     /db_xref="CDD:409380"
     Region          145..153
                     /region_name="FR4"
                     /note="FR4 [structural motif]"
                     /db_xref="CDD:409380"
     Region          145..153
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409380"
     CDS             1..208
                     /gene="MPZL1"
                     /coded_by="XM_054060765.1:29..655"
                     /db_xref="GeneID:104055976"
ORIGIN      
        1 mgarggagrt maagaarlpg sawllaaala avrvsavevs tpeeifveng tdaklpctft
       61 svevissaas vswsfqpega atrisffyyf ngkpylgkdi pfkdrvtwtg dlnkkdasis
      121 isnvqfrdng tyicdvknpp divvkpgeir vrvvekdslp afpiamvagi vigtvtglsp
      181 lisiivclvi rknnskkrys gaqsftrs
//
LOCUS       XP_053916750             130 aa            linear   VRT 09-MAR-2023
DEFINITION  mitochondrial pyruvate carrier 2 [Cuculus canorus].
ACCESSION   XP_053916750
VERSION     XP_053916750.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060775.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..130
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..130
                     /product="mitochondrial pyruvate carrier 2"
                     /calculated_mol_wt=14614
     Region          27..129
                     /region_name="MPC"
                     /note="Mitochondrial pyruvate carriers; pfam03650"
                     /db_xref="CDD:427425"
     CDS             1..130
                     /gene="MPC2"
                     /coded_by="XM_054060775.1:85..477"
                     /db_xref="GeneID:104055975"
ORIGIN      
        1 maataaglra syhrlldrie lllpprfrpf ynhpagpktv ffwapimkwg lvcagmadma
       61 rpaeklstaq savlmatgli wsryslviip knwslfavnf fvgcaggsql friwrynqel
      121 kakqqeqlqq
//
LOCUS       XP_053916766            2163 aa            linear   VRT 09-MAR-2023
DEFINITION  dedicator of cytokinesis protein 9 isoform X1 [Cuculus canorus].
ACCESSION   XP_053916766
VERSION     XP_053916766.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060791.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2163
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2163
                     /product="dedicator of cytokinesis protein 9 isoform X1"
                     /calculated_mol_wt=247393
     Region          57..167
                     /region_name="DOCK_C-D_N"
                     /note="Dedicator of cytokinesis C/D, N terminal;
                     pfam11878"
                     /db_xref="CDD:463380"
     Region          181..304
                     /region_name="PH_DOCK-D"
                     /note="Dedicator of cytokinesis-D subfamily Pleckstrin
                     homology (PH) domain; cd13267"
                     /db_xref="CDD:270087"
     Region          649..838
                     /region_name="C2_Dock-D"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; cd08697"
                     /db_xref="CDD:176079"
     Region          1705..2119
                     /region_name="DHR2_DOCK9"
                     /note="Dock Homology Region 2, a GEF domain, of Class D
                     Dedicator of Cytokinesis 9; cd11698"
                     /db_xref="CDD:212571"
     Site            order(1809,1819,1821..1822,1824..1825,1828..1829,
                     1831..1832,1835..1836)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            order(1843..1846,1848,1877..1878,1880..1883,1885..1886,
                     1905..1907,1924,1926,1955,1957,1964..1965,1971,2010..2011,
                     2014,2028,2030,2034,2037..2039,2042..2045,2047..2048,2051,
                     2079,2097..2098,2100..2101,2104)
                     /site_type="other"
                     /note="Cdc42 binding site [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            2042..2047
                     /site_type="other"
                     /note="nucleotide sensor"
                     /db_xref="CDD:212571"
     CDS             1..2163
                     /gene="DOCK9"
                     /coded_by="XM_054060791.1:437..6928"
                     /db_xref="GeneID:104057297"
ORIGIN      
        1 mgcttsvvlf kgirtvfern cgyickqqge nnaleytafs lpnedsgili hsslakpkli
       61 epidyenviv qrktqilndg lremllfpyd dfqtallkrq sryvhstvpe naekeaqslf
      121 vteciktyns dwhvvnyrye dysgefrqlp skgpkseklp vhlyevdeea dkdedaaslg
      181 sqkggitkqg wlykgnmnsa isvtmrsfkr rffhliqlgd gsynlnfykd ekiskepkgs
      241 ifldscmgvv qnnrvrrfaf elkmqdkssy llaadselem eewintlnki lqlnfeaamq
      301 ekrngeshed deqsrsesls ssfdnyypei akstreaeik lksesrvklf aldpdaqkld
      361 fssiepdvkp feekfgkkil vkcndlsfnl qccvaeneeg pttnvepffv tlslfdiknn
      421 rkisadfhvd lnhtsvrhml ssapqqmmng sgdtlhriqd lhetllqypk qgifsvtcph
      481 tdiflvarie kvlqgsithc aepymkssds sktaqkvlkn akqacqrlgq yrmpfawaar
      541 tlfkdasgtl dknarfsplf rqdsnklsne dmlklladfr kpekmaklpv ilgnldvtid
      601 nvspdfpnyv nssyipmkqf enstktsvaf eieefvpcip rhtqpftiyn nhlyvypkyl
      661 kydgqksfak arniavcief kdsdeedslp lkciygrpgg pvftrsafaa vlhhhqnpef
      721 ydeikielpt qlhekhhllf tfyhvscdss skgstkkkdv vetqvgyswl plikdgrvvt
      781 neqqipvsan lpsgylsyqe vvtgkhsgpe ikwvdggkql lkisthlvst vytqdqhlhn
      841 ffeycqktes garalgtdlv kylkslhame ghvmiaflpt vlnqlfrvlt ratqeevavn
      901 vtrviihiva qcheegldsy lrsyvkyayk aepyvaseyk tvheeltksm ttilkpsadf
      961 ltsnkllkys wfffevliks maqhliensk vkllrnqrfs asfhhavetv vnmlmphitq
     1021 kyrdnpeask nanhslaafi krcftfmdrg fvfkqinnyi scfapgdpkt lfefkfeflr
     1081 vvcnhehyip lnlpmsfgkg rvqryqdlql dysltdefck nhflvglllr evgnalqefr
     1141 dvrqiaitvl knlmikhsfd dryvskahqa riatmylplf gllienvqri nvkevspfpv
     1201 nlssnnakdd alnlptasql vtpqksgntl dnnlpkdlfg visgiaspyt tstpninsvr
     1261 nadsrgslis tdsgnslter hieksnsldk rekllrrhsa hamrtngeee enshpvkknr
     1321 vtmdfsllti palpekilha afslqlqenq qgstlgssvv rydkldqaei ksllmcflyi
     1381 lrsmsddvll tywnkatkse lmdfftitev clhqfqymgk ryiarnqegl gsivhdrksq
     1441 tlpvsrnrtg mmharlqqls sldnsltfnh syghsdadvl hqslleania tevcliildt
     1501 lslftvafkn qlltdhghnp lmkkvfdvyv cflqknqset alknvfvalk tliykfpstf
     1561 yegradmcsa lcyeilkycn sklssirtea sqllyslmrt nfdytgkksf vrthlqviis
     1621 vsqliadvvg iggtrfqqsl siinncansd kmikhttfps dvkdltkrir tvlmataqmk
     1681 ehendpemlv dlqyslaksy astpelrktw ldsmarihvk ngdlseaamc yvhvaalvae
     1741 yltrkgmfrq gctafrvitp nideeasmme dvgmqdvhfn edvlmelleq cadglwkaer
     1801 yeliadiykl iipiyekrrd ferlahlydt lhrayskvte vmhtgkrllg tyfrvaffgq
     1861 gffededgke yiykepkltp lseisqrlqk lysdkfgsen vkmiqdsgrv npkdldskya
     1921 yiqvthvvpy feekelqerk tdferthnir rfmfempftq agkrqggvee qckrrtilta
     1981 ihcfpyvkkr ipvmyqhhtd lnpievaide mskkvaelrq lcssaevdmi klqlklqgsv
     2041 svqvnagpla yaraflddtn tkrypdnkvk llkevfrqfv eacghalgvn erlikedqle
     2101 yqeemkanyr emakelseim heqitpveek asvmpnslhi fnaisgtpts ttvhgmpnss
     2161 sva
//
LOCUS       XP_053916769            2147 aa            linear   VRT 09-MAR-2023
DEFINITION  dedicator of cytokinesis protein 9 isoform X2 [Cuculus canorus].
ACCESSION   XP_053916769
VERSION     XP_053916769.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060794.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2147
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2147
                     /product="dedicator of cytokinesis protein 9 isoform X2"
                     /calculated_mol_wt=245464
     Region          41..151
                     /region_name="DOCK_C-D_N"
                     /note="Dedicator of cytokinesis C/D, N terminal;
                     pfam11878"
                     /db_xref="CDD:463380"
     Region          165..288
                     /region_name="PH_DOCK-D"
                     /note="Dedicator of cytokinesis-D subfamily Pleckstrin
                     homology (PH) domain; cd13267"
                     /db_xref="CDD:270087"
     Region          633..822
                     /region_name="C2_Dock-D"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; cd08697"
                     /db_xref="CDD:176079"
     Region          1689..2103
                     /region_name="DHR2_DOCK9"
                     /note="Dock Homology Region 2, a GEF domain, of Class D
                     Dedicator of Cytokinesis 9; cd11698"
                     /db_xref="CDD:212571"
     Site            order(1793,1803,1805..1806,1808..1809,1812..1813,
                     1815..1816,1819..1820)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            order(1827..1830,1832,1861..1862,1864..1867,1869..1870,
                     1889..1891,1908,1910,1939,1941,1948..1949,1955,1994..1995,
                     1998,2012,2014,2018,2021..2023,2026..2029,2031..2032,2035,
                     2063,2081..2082,2084..2085,2088)
                     /site_type="other"
                     /note="Cdc42 binding site [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            2026..2031
                     /site_type="other"
                     /note="nucleotide sensor"
                     /db_xref="CDD:212571"
     CDS             1..2147
                     /gene="DOCK9"
                     /coded_by="XM_054060794.1:148..6591"
                     /db_xref="GeneID:104057297"
ORIGIN      
        1 malgapetrk ftralskpgt aaelrqsvse vvrgsvllak pkliepidye nvivqrktqi
       61 lndglremll fpyddfqtal lkrqsryvhs tvpenaekea qslfvtecik tynsdwhvvn
      121 yryedysgef rqlpskgpks eklpvhlyev deeadkdeda aslgsqkggi tkqgwlykgn
      181 mnsaisvtmr sfkrrffhli qlgdgsynln fykdekiske pkgsifldsc mgvvqnnrvr
      241 rfafelkmqd kssyllaads elemeewint lnkilqlnfe aamqekrnge sheddeqsrs
      301 eslsssfdny ypeiakstre aeiklksesr vklfaldpda qkldfssiep dvkpfeekfg
      361 kkilvkcndl sfnlqccvae neegpttnve pffvtlslfd iknnrkisad fhvdlnhtsv
      421 rhmlssapqq mmngsgdtlh riqdlhetll qypkqgifsv tcphtdiflv ariekvlqgs
      481 ithcaepymk ssdssktaqk vlknakqacq rlgqyrmpfa waartlfkda sgtldknarf
      541 splfrqdsnk lsnedmlkll adfrkpekma klpvilgnld vtidnvspdf pnyvnssyip
      601 mkqfenstkt svafeieefv pciprhtqpf tiynnhlyvy pkylkydgqk sfakarniav
      661 ciefkdsdee dslplkciyg rpggpvftrs afaavlhhhq npefydeiki elptqlhekh
      721 hllftfyhvs cdssskgstk kkdvvetqvg yswlplikdg rvvtneqqip vsanlpsgyl
      781 syqevvtgkh sgpeikwvdg gkqllkisth lvstvytqdq hlhnffeycq ktesgaralg
      841 tdlvkylksl hameghvmia flptvlnqlf rvltratqee vavnvtrvii hivaqcheeg
      901 ldsylrsyvk yaykaepyva seyktvheel tksmttilkp sadfltsnkl lkyswfffev
      961 liksmaqhli enskvkllrn qrfsasfhha vetvvnmlmp hitqkyrdnp easknanhsl
     1021 aafikrcftf mdrgfvfkqi nnyiscfapg dpktlfefkf eflrvvcnhe hyiplnlpms
     1081 fgkgrvqryq dlqldysltd efcknhflvg lllrevgnal qefrdvrqia itvlknlmik
     1141 hsfddryvsk ahqariatmy lplfgllien vqrinvkevs pfpvnlssnn akddalnlpt
     1201 asqlvtpqks gntldnnlpk dlfgvisgia spyttstpni nsvrnadsrg slistdsgns
     1261 lterhieksn sldkrekllr rhsahamrtn geeeenshpv kknrvtmdfs lltipalpek
     1321 ilhaafslql qenqqgstlg ssvvrydkld qaeiksllmc flyilrsmsd dvlltywnka
     1381 tkselmdfft itevclhqfq ymgkryiarn qeglgsivhd rksqtlpvsr nrtgmmharl
     1441 qqlssldnsl tfnhsyghsd advlhqslle aniatevcli ildtlslftv afknqlltdh
     1501 ghnplmkkvf dvyvcflqkn qsetalknvf valktliykf pstfyegrad mcsalcyeil
     1561 kycnsklssi rteasqllys lmrtnfdytg kksfvrthlq viisvsqlia dvvgiggtrf
     1621 qqslsiinnc ansdkmikht tfpsdvkdlt krirtvlmat aqmkehendp emlvdlqysl
     1681 aksyastpel rktwldsmar ihvkngdlse aamcyvhvaa lvaeyltrkg mfrqgctafr
     1741 vitpnideea smmedvgmqd vhfnedvlme lleqcadglw kaeryeliad iykliipiye
     1801 krrdferlah lydtlhrays kvtevmhtgk rllgtyfrva ffgqgffede dgkeyiykep
     1861 kltplseisq rlqklysdkf gsenvkmiqd sgrvnpkdld skyayiqvth vvpyfeekel
     1921 qerktdfert hnirrfmfem pftqagkrqg gveeqckrrt iltaihcfpy vkkripvmyq
     1981 hhtdlnpiev aidemskkva elrqlcssae vdmiklqlkl qgsvsvqvna gplayarafl
     2041 ddtntkrypd nkvkllkevf rqfveacgha lgvnerlike dqleyqeemk anyremakel
     2101 seimheqitp veekasvmpn slhifnaisg tptsttvhgm pnsssva
//
LOCUS       XP_053916771            2147 aa            linear   VRT 09-MAR-2023
DEFINITION  dedicator of cytokinesis protein 9 isoform X3 [Cuculus canorus].
ACCESSION   XP_053916771
VERSION     XP_053916771.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060796.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2147
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2147
                     /product="dedicator of cytokinesis protein 9 isoform X3"
                     /calculated_mol_wt=245616
     Region          41..151
                     /region_name="DOCK_C-D_N"
                     /note="Dedicator of cytokinesis C/D, N terminal;
                     pfam11878"
                     /db_xref="CDD:463380"
     Region          165..288
                     /region_name="PH_DOCK-D"
                     /note="Dedicator of cytokinesis-D subfamily Pleckstrin
                     homology (PH) domain; cd13267"
                     /db_xref="CDD:270087"
     Region          633..822
                     /region_name="C2_Dock-D"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; cd08697"
                     /db_xref="CDD:176079"
     Region          1689..2103
                     /region_name="DHR2_DOCK9"
                     /note="Dock Homology Region 2, a GEF domain, of Class D
                     Dedicator of Cytokinesis 9; cd11698"
                     /db_xref="CDD:212571"
     Site            order(1793,1803,1805..1806,1808..1809,1812..1813,
                     1815..1816,1819..1820)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            order(1827..1830,1832,1861..1862,1864..1867,1869..1870,
                     1889..1891,1908,1910,1939,1941,1948..1949,1955,1994..1995,
                     1998,2012,2014,2018,2021..2023,2026..2029,2031..2032,2035,
                     2063,2081..2082,2084..2085,2088)
                     /site_type="other"
                     /note="Cdc42 binding site [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            2026..2031
                     /site_type="other"
                     /note="nucleotide sensor"
                     /db_xref="CDD:212571"
     CDS             1..2147
                     /gene="DOCK9"
                     /coded_by="XM_054060796.1:159..6602"
                     /db_xref="GeneID:104057297"
ORIGIN      
        1 mqartnrslk kelviespqq skdagpceve vespvvvpak pkliepidye nvivqrktqi
       61 lndglremll fpyddfqtal lkrqsryvhs tvpenaekea qslfvtecik tynsdwhvvn
      121 yryedysgef rqlpskgpks eklpvhlyev deeadkdeda aslgsqkggi tkqgwlykgn
      181 mnsaisvtmr sfkrrffhli qlgdgsynln fykdekiske pkgsifldsc mgvvqnnrvr
      241 rfafelkmqd kssyllaads elemeewint lnkilqlnfe aamqekrnge sheddeqsrs
      301 eslsssfdny ypeiakstre aeiklksesr vklfaldpda qkldfssiep dvkpfeekfg
      361 kkilvkcndl sfnlqccvae neegpttnve pffvtlslfd iknnrkisad fhvdlnhtsv
      421 rhmlssapqq mmngsgdtlh riqdlhetll qypkqgifsv tcphtdiflv ariekvlqgs
      481 ithcaepymk ssdssktaqk vlknakqacq rlgqyrmpfa waartlfkda sgtldknarf
      541 splfrqdsnk lsnedmlkll adfrkpekma klpvilgnld vtidnvspdf pnyvnssyip
      601 mkqfenstkt svafeieefv pciprhtqpf tiynnhlyvy pkylkydgqk sfakarniav
      661 ciefkdsdee dslplkciyg rpggpvftrs afaavlhhhq npefydeiki elptqlhekh
      721 hllftfyhvs cdssskgstk kkdvvetqvg yswlplikdg rvvtneqqip vsanlpsgyl
      781 syqevvtgkh sgpeikwvdg gkqllkisth lvstvytqdq hlhnffeycq ktesgaralg
      841 tdlvkylksl hameghvmia flptvlnqlf rvltratqee vavnvtrvii hivaqcheeg
      901 ldsylrsyvk yaykaepyva seyktvheel tksmttilkp sadfltsnkl lkyswfffev
      961 liksmaqhli enskvkllrn qrfsasfhha vetvvnmlmp hitqkyrdnp easknanhsl
     1021 aafikrcftf mdrgfvfkqi nnyiscfapg dpktlfefkf eflrvvcnhe hyiplnlpms
     1081 fgkgrvqryq dlqldysltd efcknhflvg lllrevgnal qefrdvrqia itvlknlmik
     1141 hsfddryvsk ahqariatmy lplfgllien vqrinvkevs pfpvnlssnn akddalnlpt
     1201 asqlvtpqks gntldnnlpk dlfgvisgia spyttstpni nsvrnadsrg slistdsgns
     1261 lterhieksn sldkrekllr rhsahamrtn geeeenshpv kknrvtmdfs lltipalpek
     1321 ilhaafslql qenqqgstlg ssvvrydkld qaeiksllmc flyilrsmsd dvlltywnka
     1381 tkselmdfft itevclhqfq ymgkryiarn qeglgsivhd rksqtlpvsr nrtgmmharl
     1441 qqlssldnsl tfnhsyghsd advlhqslle aniatevcli ildtlslftv afknqlltdh
     1501 ghnplmkkvf dvyvcflqkn qsetalknvf valktliykf pstfyegrad mcsalcyeil
     1561 kycnsklssi rteasqllys lmrtnfdytg kksfvrthlq viisvsqlia dvvgiggtrf
     1621 qqslsiinnc ansdkmikht tfpsdvkdlt krirtvlmat aqmkehendp emlvdlqysl
     1681 aksyastpel rktwldsmar ihvkngdlse aamcyvhvaa lvaeyltrkg mfrqgctafr
     1741 vitpnideea smmedvgmqd vhfnedvlme lleqcadglw kaeryeliad iykliipiye
     1801 krrdferlah lydtlhrays kvtevmhtgk rllgtyfrva ffgqgffede dgkeyiykep
     1861 kltplseisq rlqklysdkf gsenvkmiqd sgrvnpkdld skyayiqvth vvpyfeekel
     1921 qerktdfert hnirrfmfem pftqagkrqg gveeqckrrt iltaihcfpy vkkripvmyq
     1981 hhtdlnpiev aidemskkva elrqlcssae vdmiklqlkl qgsvsvqvna gplayarafl
     2041 ddtntkrypd nkvkllkevf rqfveacgha lgvnerlike dqleyqeemk anyremakel
     2101 seimheqitp veekasvmpn slhifnaisg tptsttvhgm pnsssva
//
LOCUS       XP_053916775            2140 aa            linear   VRT 09-MAR-2023
DEFINITION  dedicator of cytokinesis protein 9 isoform X4 [Cuculus canorus].
ACCESSION   XP_053916775
VERSION     XP_053916775.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060800.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2140
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2140
                     /product="dedicator of cytokinesis protein 9 isoform X4"
                     /calculated_mol_wt=244819
     Region          57..167
                     /region_name="DOCK_C-D_N"
                     /note="Dedicator of cytokinesis C/D, N terminal;
                     pfam11878"
                     /db_xref="CDD:463380"
     Region          181..304
                     /region_name="PH_DOCK-D"
                     /note="Dedicator of cytokinesis-D subfamily Pleckstrin
                     homology (PH) domain; cd13267"
                     /db_xref="CDD:270087"
     Region          649..838
                     /region_name="C2_Dock-D"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; cd08697"
                     /db_xref="CDD:176079"
     Region          1682..2096
                     /region_name="DHR2_DOCK9"
                     /note="Dock Homology Region 2, a GEF domain, of Class D
                     Dedicator of Cytokinesis 9; cd11698"
                     /db_xref="CDD:212571"
     Site            order(1786,1796,1798..1799,1801..1802,1805..1806,
                     1808..1809,1812..1813)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            order(1820..1823,1825,1854..1855,1857..1860,1862..1863,
                     1882..1884,1901,1903,1932,1934,1941..1942,1948,1987..1988,
                     1991,2005,2007,2011,2014..2016,2019..2022,2024..2025,2028,
                     2056,2074..2075,2077..2078,2081)
                     /site_type="other"
                     /note="Cdc42 binding site [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            2019..2024
                     /site_type="other"
                     /note="nucleotide sensor"
                     /db_xref="CDD:212571"
     CDS             1..2140
                     /gene="DOCK9"
                     /coded_by="XM_054060800.1:437..6859"
                     /db_xref="GeneID:104057297"
ORIGIN      
        1 mgcttsvvlf kgirtvfern cgyickqqge nnaleytafs lpnedsgili hsslakpkli
       61 epidyenviv qrktqilndg lremllfpyd dfqtallkrq sryvhstvpe naekeaqslf
      121 vteciktyns dwhvvnyrye dysgefrqlp skgpkseklp vhlyevdeea dkdedaaslg
      181 sqkggitkqg wlykgnmnsa isvtmrsfkr rffhliqlgd gsynlnfykd ekiskepkgs
      241 ifldscmgvv qnnrvrrfaf elkmqdkssy llaadselem eewintlnki lqlnfeaamq
      301 ekrngeshed deqsrsesls ssfdnyypei akstreaeik lksesrvklf aldpdaqkld
      361 fssiepdvkp feekfgkkil vkcndlsfnl qccvaeneeg pttnvepffv tlslfdiknn
      421 rkisadfhvd lnhtsvrhml ssapqqmmng sgdtlhriqd lhetllqypk qgifsvtcph
      481 tdiflvarie kvlqgsithc aepymkssds sktaqkvlkn akqacqrlgq yrmpfawaar
      541 tlfkdasgtl dknarfsplf rqdsnklsne dmlklladfr kpekmaklpv ilgnldvtid
      601 nvspdfpnyv nssyipmkqf enstktsvaf eieefvpcip rhtqpftiyn nhlyvypkyl
      661 kydgqksfak arniavcief kdsdeedslp lkciygrpgg pvftrsafaa vlhhhqnpef
      721 ydeikielpt qlhekhhllf tfyhvscdss skgstkkkdv vetqvgyswl plikdgrvvt
      781 neqqipvsan lpsgylsyqe vvtgkhsgpe ikwvdggkql lkisthlvst vytqdqhlhn
      841 ffeycqktes garalgtdlv kylkslhame ghvmiaflpt vlnqlfrvlt ratqeevavn
      901 vtrviihiva qcheegldsy lrsyvkyayk aepyvaseyk tvheeltksm ttilkpsadf
      961 ltsnkllkys wfffevliks maqhliensk vkllrnqrfs asfhhavetv vnmlmphitq
     1021 kyrdnpeask nanhslaafi krcftfmdrg fvfkqinnyi scfapgdpkt lfefkfeflr
     1081 vvcnhehyip lnlpmsfgkg rvqryqdlql dysltdefck nhflvglllr evgnalqefr
     1141 dvrqiaitvl knlmikhsfd dryvskahqa riatmylplf gllienvqri nvkevspfpv
     1201 nlssnnakdd alnlptasql vtpqksgntl dnnlpkdlfg visgiaspyt tstpninsvr
     1261 nadsrgslis tdsgnslter hieksnsldk rekllrrhsa hamrtngeee enshpvkknr
     1321 vtmdfsllti palpekilha afslqlqenq qgstlgssvv rydkldqaei ksllmcflyi
     1381 lrsmsddvll tywnkatkse lmdfftitev clhqfqymgk ryiartgmmh arlqqlssld
     1441 nsltfnhsyg hsdadvlhqs lleaniatev cliildtlsl ftvafknqll tdhghnplmk
     1501 kvfdvyvcfl qknqsetalk nvfvalktli ykfpstfyeg radmcsalcy eilkycnskl
     1561 ssirteasql lyslmrtnfd ytgkksfvrt hlqviisvsq liadvvgigg trfqqslsii
     1621 nncansdkmi khttfpsdvk dltkrirtvl mataqmkehe ndpemlvdlq yslaksyast
     1681 pelrktwlds marihvkngd lseaamcyvh vaalvaeylt rkgmfrqgct afrvitpnid
     1741 eeasmmedvg mqdvhfnedv lmelleqcad glwkaeryel iadiykliip iyekrrdfer
     1801 lahlydtlhr ayskvtevmh tgkrllgtyf rvaffgqgff ededgkeyiy kepkltplse
     1861 isqrlqklys dkfgsenvkm iqdsgrvnpk dldskyayiq vthvvpyfee kelqerktdf
     1921 erthnirrfm fempftqagk rqggveeqck rrtiltaihc fpyvkkripv myqhhtdlnp
     1981 ievaidemsk kvaelrqlcs saevdmiklq lklqgsvsvq vnagplayar aflddtntkr
     2041 ypdnkvkllk evfrqfveac ghalgvnerl ikedqleyqe emkanyrema kelseimheq
     2101 itpveekasv mpnslhifna isgtptsttv hgmpnsssva
//
LOCUS       XP_053916783            2132 aa            linear   VRT 09-MAR-2023
DEFINITION  dedicator of cytokinesis protein 9 isoform X5 [Cuculus canorus].
ACCESSION   XP_053916783
VERSION     XP_053916783.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060808.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2132
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2132
                     /product="dedicator of cytokinesis protein 9 isoform X5"
                     /calculated_mol_wt=243719
     Region          57..167
                     /region_name="DOCK_C-D_N"
                     /note="Dedicator of cytokinesis C/D, N terminal;
                     pfam11878"
                     /db_xref="CDD:463380"
     Region          181..304
                     /region_name="PH_DOCK-D"
                     /note="Dedicator of cytokinesis-D subfamily Pleckstrin
                     homology (PH) domain; cd13267"
                     /db_xref="CDD:270087"
     Region          649..838
                     /region_name="C2_Dock-D"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; cd08697"
                     /db_xref="CDD:176079"
     Region          1674..2088
                     /region_name="DHR2_DOCK9"
                     /note="Dock Homology Region 2, a GEF domain, of Class D
                     Dedicator of Cytokinesis 9; cd11698"
                     /db_xref="CDD:212571"
     Site            order(1778,1788,1790..1791,1793..1794,1797..1798,
                     1800..1801,1804..1805)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            order(1812..1815,1817,1846..1847,1849..1852,1854..1855,
                     1874..1876,1893,1895,1924,1926,1933..1934,1940,1979..1980,
                     1983,1997,1999,2003,2006..2008,2011..2014,2016..2017,2020,
                     2048,2066..2067,2069..2070,2073)
                     /site_type="other"
                     /note="Cdc42 binding site [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            2011..2016
                     /site_type="other"
                     /note="nucleotide sensor"
                     /db_xref="CDD:212571"
     CDS             1..2132
                     /gene="DOCK9"
                     /coded_by="XM_054060808.1:437..6835"
                     /db_xref="GeneID:104057297"
ORIGIN      
        1 mgcttsvvlf kgirtvfern cgyickqqge nnaleytafs lpnedsgili hsslakpkli
       61 epidyenviv qrktqilndg lremllfpyd dfqtallkrq sryvhstvpe naekeaqslf
      121 vteciktyns dwhvvnyrye dysgefrqlp skgpkseklp vhlyevdeea dkdedaaslg
      181 sqkggitkqg wlykgnmnsa isvtmrsfkr rffhliqlgd gsynlnfykd ekiskepkgs
      241 ifldscmgvv qnnrvrrfaf elkmqdkssy llaadselem eewintlnki lqlnfeaamq
      301 ekrngeshed deqsrsesls ssfdnyypei akstreaeik lksesrvklf aldpdaqkld
      361 fssiepdvkp feekfgkkil vkcndlsfnl qccvaeneeg pttnvepffv tlslfdiknn
      421 rkisadfhvd lnhtsvrhml ssapqqmmng sgdtlhriqd lhetllqypk qgifsvtcph
      481 tdiflvarie kvlqgsithc aepymkssds sktaqkvlkn akqacqrlgq yrmpfawaar
      541 tlfkdasgtl dknarfsplf rqdsnklsne dmlklladfr kpekmaklpv ilgnldvtid
      601 nvspdfpnyv nssyipmkqf enstktsvaf eieefvpcip rhtqpftiyn nhlyvypkyl
      661 kydgqksfak arniavcief kdsdeedslp lkciygrpgg pvftrsafaa vlhhhqnpef
      721 ydeikielpt qlhekhhllf tfyhvscdss skgstkkkdv vetqvgyswl plikdgrvvt
      781 neqqipvsan lpsgylsyqe vvtgkhsgpe ikwvdggkql lkisthlvst vytqdqhlhn
      841 ffeycqktes garalgtdlv kylkslhame ghvmiaflpt vlnqlfrvlt ratqeevavn
      901 vtrviihiva qcheegldsy lrsyvkyayk aepyvaseyk tvheeltksm ttilkpsadf
      961 ltsnkllkys wfffevliks maqhliensk vkllrnqrfs asfhhavetv vnmlmphitq
     1021 kyrdnpeask nanhslaafi krcftfmdrg fvfkqinnyi scfapgdpkt lfefkfeflr
     1081 vvcnhehyip lnlpmsfgkg rvqryqdlql dysltdefck nhflvglllr evgnalqefr
     1141 dvrqiaitvl knlmikhsfd dryvskahqa riatmylplf gllienvqri nvkevspfpv
     1201 nlssnnakdd alnlptasql vtpqksgntl dnnlpkdlfg visgiaspyt tstpninsvr
     1261 nadsrgslis tdsgnslter hieksnsldk rekllrrhsa hamrtngeee enshpvkknr
     1321 vtmdfsllti palpekilha afslqlqenq qgstlgssvv rydkldqaei ksllmcflyi
     1381 lrsmsddvll tywnkatkse lmdfftitev clhqfqymgk ryiasvrkis silgisvdng
     1441 yghsdadvlh qslleaniat evcliildtl slftvafknq lltdhghnpl mkkvfdvyvc
     1501 flqknqseta lknvfvalkt liykfpstfy egradmcsal cyeilkycns klssirteas
     1561 qllyslmrtn fdytgkksfv rthlqviisv sqliadvvgi ggtrfqqsls iinncansdk
     1621 mikhttfpsd vkdltkrirt vlmataqmke hendpemlvd lqyslaksya stpelrktwl
     1681 dsmarihvkn gdlseaamcy vhvaalvaey ltrkgmfrqg ctafrvitpn ideeasmmed
     1741 vgmqdvhfne dvlmelleqc adglwkaery eliadiykli ipiyekrrdf erlahlydtl
     1801 hrayskvtev mhtgkrllgt yfrvaffgqg ffededgkey iykepkltpl seisqrlqkl
     1861 ysdkfgsenv kmiqdsgrvn pkdldskyay iqvthvvpyf eekelqerkt dferthnirr
     1921 fmfempftqa gkrqggveeq ckrrtiltai hcfpyvkkri pvmyqhhtdl npievaidem
     1981 skkvaelrql cssaevdmik lqlklqgsvs vqvnagplay araflddtnt krypdnkvkl
     2041 lkevfrqfve acghalgvne rlikedqley qeemkanyre makelseimh eqitpveeka
     2101 svmpnslhif naisgtptst tvhgmpnsss va
//
LOCUS       XP_053916792            2105 aa            linear   VRT 09-MAR-2023
DEFINITION  dedicator of cytokinesis protein 9 isoform X6 [Cuculus canorus].
ACCESSION   XP_053916792
VERSION     XP_053916792.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060817.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2105
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2105
                     /product="dedicator of cytokinesis protein 9 isoform X6"
                     /calculated_mol_wt=240691
     Region          57..167
                     /region_name="DOCK_C-D_N"
                     /note="Dedicator of cytokinesis C/D, N terminal;
                     pfam11878"
                     /db_xref="CDD:463380"
     Region          181..304
                     /region_name="PH_DOCK-D"
                     /note="Dedicator of cytokinesis-D subfamily Pleckstrin
                     homology (PH) domain; cd13267"
                     /db_xref="CDD:270087"
     Region          649..838
                     /region_name="C2_Dock-D"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; cd08697"
                     /db_xref="CDD:176079"
     Region          1647..2061
                     /region_name="DHR2_DOCK9"
                     /note="Dock Homology Region 2, a GEF domain, of Class D
                     Dedicator of Cytokinesis 9; cd11698"
                     /db_xref="CDD:212571"
     Site            order(1751,1761,1763..1764,1766..1767,1770..1771,
                     1773..1774,1777..1778)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            order(1785..1788,1790,1819..1820,1822..1825,1827..1828,
                     1847..1849,1866,1868,1897,1899,1906..1907,1913,1952..1953,
                     1956,1970,1972,1976,1979..1981,1984..1987,1989..1990,1993,
                     2021,2039..2040,2042..2043,2046)
                     /site_type="other"
                     /note="Cdc42 binding site [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            1984..1989
                     /site_type="other"
                     /note="nucleotide sensor"
                     /db_xref="CDD:212571"
     CDS             1..2105
                     /gene="DOCK9"
                     /coded_by="XM_054060817.1:436..6753"
                     /db_xref="GeneID:104057297"
ORIGIN      
        1 mgcttsvvlf kgirtvfern cgyickqqge nnaleytafs lpnedsgili hsslakpkli
       61 epidyenviv qrktqilndg lremllfpyd dfqtallkrq sryvhstvpe naekeaqslf
      121 vteciktyns dwhvvnyrye dysgefrqlp skgpkseklp vhlyevdeea dkdedaaslg
      181 sqkggitkqg wlykgnmnsa isvtmrsfkr rffhliqlgd gsynlnfykd ekiskepkgs
      241 ifldscmgvv qnnrvrrfaf elkmqdkssy llaadselem eewintlnki lqlnfeaamq
      301 ekrngeshed deqsrsesls ssfdnyypei akstreaeik lksesrvklf aldpdaqkld
      361 fssiepdvkp feekfgkkil vkcndlsfnl qccvaeneeg pttnvepffv tlslfdiknn
      421 rkisadfhvd lnhtsvrhml ssapqqmmng sgdtlhriqd lhetllqypk qgifsvtcph
      481 tdiflvarie kvlqgsithc aepymkssds sktaqkvlkn akqacqrlgq yrmpfawaar
      541 tlfkdasgtl dknarfsplf rqdsnklsne dmlklladfr kpekmaklpv ilgnldvtid
      601 nvspdfpnyv nssyipmkqf enstktsvaf eieefvpcip rhtqpftiyn nhlyvypkyl
      661 kydgqksfak arniavcief kdsdeedslp lkciygrpgg pvftrsafaa vlhhhqnpef
      721 ydeikielpt qlhekhhllf tfyhvscdss skgstkkkdv vetqvgyswl plikdgrvvt
      781 neqqipvsan lpsgylsyqe vvtgkhsgpe ikwvdggkql lkisthlvst vytqdqhlhn
      841 ffeycqktes garalgtdlv kylkslhame ghvmiaflpt vlnqlfrvlt ratqeevavn
      901 vtrviihiva qcheegldsy lrsyvkyayk aepyvaseyk tvheeltksm ttilkpsadf
      961 ltsnkllkys wfffevliks maqhliensk vkllrnqrfs asfhhavetv vnmlmphitq
     1021 kyrdnpeask nanhslaafi krcftfmdrg fvfkqinnyi scfapgdpkt lfefkfeflr
     1081 vvcnhehyip lnlpmsfgkg rvqryqdlql dysltdefck nhflvglllr evgnalqefr
     1141 dvrqiaitvl knlmikhsfd dryvskahqa riatmylplf gllienvqri nvkevspfpv
     1201 nlssnnakdd alnlptasql vtpqksgntl dnnlpkdlfg visgiaspyt tstpninsvr
     1261 nadsrgslis tdsgnslter hieksnsldk nqqgstlgss vvrydkldqa eiksllmcfl
     1321 yilrsmsddv lltywnkatk selmdfftit evclhqfqym gkryiarnqe glgsivhdrk
     1381 sqtlpvsrnr tgmmharlqq lssldnsltf nhsyghsdad vlhqsllean iatevcliil
     1441 dtlslftvaf knqlltdhgh nplmkkvfdv yvcflqknqs etalknvfva lktliykfps
     1501 tfyegradmc salcyeilky cnsklssirt easqllyslm rtnfdytgkk sfvrthlqvi
     1561 isvsqliadv vgiggtrfqq slsiinncan sdkmikhttf psdvkdltkr irtvlmataq
     1621 mkehendpem lvdlqyslak syastpelrk twldsmarih vkngdlseaa mcyvhvaalv
     1681 aeyltrkgmf rqgctafrvi tpnideeasm medvgmqdvh fnedvlmell eqcadglwka
     1741 eryeliadiy kliipiyekr rdferlahly dtlhrayskv tevmhtgkrl lgtyfrvaff
     1801 gqgffededg keyiykepkl tplseisqrl qklysdkfgs envkmiqdsg rvnpkdldsk
     1861 yayiqvthvv pyfeekelqe rktdferthn irrfmfempf tqagkrqggv eeqckrrtil
     1921 taihcfpyvk kripvmyqhh tdlnpievai demskkvael rqlcssaevd miklqlklqg
     1981 svsvqvnagp layarafldd tntkrypdnk vkllkevfrq fveacghalg vnerlikedq
     2041 leyqeemkan yremakelse imheqitpve ekasvmpnsl hifnaisgtp tsttvhgmpn
     2101 sssva
//
LOCUS       XP_053916800            2089 aa            linear   VRT 09-MAR-2023
DEFINITION  dedicator of cytokinesis protein 9 isoform X7 [Cuculus canorus].
ACCESSION   XP_053916800
VERSION     XP_053916800.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060825.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2089
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2089
                     /product="dedicator of cytokinesis protein 9 isoform X7"
                     /calculated_mol_wt=238914
     Region          41..151
                     /region_name="DOCK_C-D_N"
                     /note="Dedicator of cytokinesis C/D, N terminal;
                     pfam11878"
                     /db_xref="CDD:463380"
     Region          165..288
                     /region_name="PH_DOCK-D"
                     /note="Dedicator of cytokinesis-D subfamily Pleckstrin
                     homology (PH) domain; cd13267"
                     /db_xref="CDD:270087"
     Region          633..822
                     /region_name="C2_Dock-D"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; cd08697"
                     /db_xref="CDD:176079"
     Region          1631..2045
                     /region_name="DHR2_DOCK9"
                     /note="Dock Homology Region 2, a GEF domain, of Class D
                     Dedicator of Cytokinesis 9; cd11698"
                     /db_xref="CDD:212571"
     Site            order(1735,1745,1747..1748,1750..1751,1754..1755,
                     1757..1758,1761..1762)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            order(1769..1772,1774,1803..1804,1806..1809,1811..1812,
                     1831..1833,1850,1852,1881,1883,1890..1891,1897,1936..1937,
                     1940,1954,1956,1960,1963..1965,1968..1971,1973..1974,1977,
                     2005,2023..2024,2026..2027,2030)
                     /site_type="other"
                     /note="Cdc42 binding site [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            1968..1973
                     /site_type="other"
                     /note="nucleotide sensor"
                     /db_xref="CDD:212571"
     CDS             1..2089
                     /gene="DOCK9"
                     /coded_by="XM_054060825.1:158..6427"
                     /db_xref="GeneID:104057297"
ORIGIN      
        1 mqartnrslk kelviespqq skdagpceve vespvvvpak pkliepidye nvivqrktqi
       61 lndglremll fpyddfqtal lkrqsryvhs tvpenaekea qslfvtecik tynsdwhvvn
      121 yryedysgef rqlpskgpks eklpvhlyev deeadkdeda aslgsqkggi tkqgwlykgn
      181 mnsaisvtmr sfkrrffhli qlgdgsynln fykdekiske pkgsifldsc mgvvqnnrvr
      241 rfafelkmqd kssyllaads elemeewint lnkilqlnfe aamqekrnge sheddeqsrs
      301 eslsssfdny ypeiakstre aeiklksesr vklfaldpda qkldfssiep dvkpfeekfg
      361 kkilvkcndl sfnlqccvae neegpttnve pffvtlslfd iknnrkisad fhvdlnhtsv
      421 rhmlssapqq mmngsgdtlh riqdlhetll qypkqgifsv tcphtdiflv ariekvlqgs
      481 ithcaepymk ssdssktaqk vlknakqacq rlgqyrmpfa waartlfkda sgtldknarf
      541 splfrqdsnk lsnedmlkll adfrkpekma klpvilgnld vtidnvspdf pnyvnssyip
      601 mkqfenstkt svafeieefv pciprhtqpf tiynnhlyvy pkylkydgqk sfakarniav
      661 ciefkdsdee dslplkciyg rpggpvftrs afaavlhhhq npefydeiki elptqlhekh
      721 hllftfyhvs cdssskgstk kkdvvetqvg yswlplikdg rvvtneqqip vsanlpsgyl
      781 syqevvtgkh sgpeikwvdg gkqllkisth lvstvytqdq hlhnffeycq ktesgaralg
      841 tdlvkylksl hameghvmia flptvlnqlf rvltratqee vavnvtrvii hivaqcheeg
      901 ldsylrsyvk yaykaepyva seyktvheel tksmttilkp sadfltsnkl lkyswfffev
      961 liksmaqhli enskvkllrn qrfsasfhha vetvvnmlmp hitqkyrdnp easknanhsl
     1021 aafikrcftf mdrgfvfkqi nnyiscfapg dpktlfefkf eflrvvcnhe hyiplnlpms
     1081 fgkgrvqryq dlqldysltd efcknhflvg lllrevgnal qefrdvrqia itvlknlmik
     1141 hsfddryvsk ahqariatmy lplfgllien vqrinvkevs pfpvnlssnn akddalnlpt
     1201 asqlvtpqks gntldnnlpk dlfgvisgia spyttstpni nsvrnadsrg slistdsgns
     1261 lterhieksn sldknqqgst lgssvvrydk ldqaeiksll mcflyilrsm sddvlltywn
     1321 katkselmdf ftitevclhq fqymgkryia rnqeglgsiv hdrksqtlpv srnrtgmmha
     1381 rlqqlssldn sltfnhsygh sdadvlhqsl leaniatevc liildtlslf tvafknqllt
     1441 dhghnplmkk vfdvyvcflq knqsetalkn vfvalktliy kfpstfyegr admcsalcye
     1501 ilkycnskls sirteasqll yslmrtnfdy tgkksfvrth lqviisvsql iadvvgiggt
     1561 rfqqslsiin ncansdkmik httfpsdvkd ltkrirtvlm ataqmkehen dpemlvdlqy
     1621 slaksyastp elrktwldsm arihvkngdl seaamcyvhv aalvaeyltr kgmfrqgcta
     1681 frvitpnide easmmedvgm qdvhfnedvl melleqcadg lwkaeryeli adiykliipi
     1741 yekrrdferl ahlydtlhra yskvtevmht gkrllgtyfr vaffgqgffe dedgkeyiyk
     1801 epkltplsei sqrlqklysd kfgsenvkmi qdsgrvnpkd ldskyayiqv thvvpyfeek
     1861 elqerktdfe rthnirrfmf empftqagkr qggveeqckr rtiltaihcf pyvkkripvm
     1921 yqhhtdlnpi evaidemskk vaelrqlcss aevdmiklql klqgsvsvqv nagplayara
     1981 flddtntkry pdnkvkllke vfrqfveacg halgvnerli kedqleyqee mkanyremak
     2041 elseimheqi tpveekasvm pnslhifnai sgtptsttvh gmpnsssva
//
LOCUS       XP_053916809            2089 aa            linear   VRT 09-MAR-2023
DEFINITION  dedicator of cytokinesis protein 9 isoform X8 [Cuculus canorus].
ACCESSION   XP_053916809
VERSION     XP_053916809.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060834.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2089
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2089
                     /product="dedicator of cytokinesis protein 9 isoform X8"
                     /calculated_mol_wt=238762
     Region          41..151
                     /region_name="DOCK_C-D_N"
                     /note="Dedicator of cytokinesis C/D, N terminal;
                     pfam11878"
                     /db_xref="CDD:463380"
     Region          165..288
                     /region_name="PH_DOCK-D"
                     /note="Dedicator of cytokinesis-D subfamily Pleckstrin
                     homology (PH) domain; cd13267"
                     /db_xref="CDD:270087"
     Region          633..822
                     /region_name="C2_Dock-D"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; cd08697"
                     /db_xref="CDD:176079"
     Region          1631..2045
                     /region_name="DHR2_DOCK9"
                     /note="Dock Homology Region 2, a GEF domain, of Class D
                     Dedicator of Cytokinesis 9; cd11698"
                     /db_xref="CDD:212571"
     Site            order(1735,1745,1747..1748,1750..1751,1754..1755,
                     1757..1758,1761..1762)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            order(1769..1772,1774,1803..1804,1806..1809,1811..1812,
                     1831..1833,1850,1852,1881,1883,1890..1891,1897,1936..1937,
                     1940,1954,1956,1960,1963..1965,1968..1971,1973..1974,1977,
                     2005,2023..2024,2026..2027,2030)
                     /site_type="other"
                     /note="Cdc42 binding site [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            1968..1973
                     /site_type="other"
                     /note="nucleotide sensor"
                     /db_xref="CDD:212571"
     CDS             1..2089
                     /gene="DOCK9"
                     /coded_by="XM_054060834.1:148..6417"
                     /db_xref="GeneID:104057297"
ORIGIN      
        1 malgapetrk ftralskpgt aaelrqsvse vvrgsvllak pkliepidye nvivqrktqi
       61 lndglremll fpyddfqtal lkrqsryvhs tvpenaekea qslfvtecik tynsdwhvvn
      121 yryedysgef rqlpskgpks eklpvhlyev deeadkdeda aslgsqkggi tkqgwlykgn
      181 mnsaisvtmr sfkrrffhli qlgdgsynln fykdekiske pkgsifldsc mgvvqnnrvr
      241 rfafelkmqd kssyllaads elemeewint lnkilqlnfe aamqekrnge sheddeqsrs
      301 eslsssfdny ypeiakstre aeiklksesr vklfaldpda qkldfssiep dvkpfeekfg
      361 kkilvkcndl sfnlqccvae neegpttnve pffvtlslfd iknnrkisad fhvdlnhtsv
      421 rhmlssapqq mmngsgdtlh riqdlhetll qypkqgifsv tcphtdiflv ariekvlqgs
      481 ithcaepymk ssdssktaqk vlknakqacq rlgqyrmpfa waartlfkda sgtldknarf
      541 splfrqdsnk lsnedmlkll adfrkpekma klpvilgnld vtidnvspdf pnyvnssyip
      601 mkqfenstkt svafeieefv pciprhtqpf tiynnhlyvy pkylkydgqk sfakarniav
      661 ciefkdsdee dslplkciyg rpggpvftrs afaavlhhhq npefydeiki elptqlhekh
      721 hllftfyhvs cdssskgstk kkdvvetqvg yswlplikdg rvvtneqqip vsanlpsgyl
      781 syqevvtgkh sgpeikwvdg gkqllkisth lvstvytqdq hlhnffeycq ktesgaralg
      841 tdlvkylksl hameghvmia flptvlnqlf rvltratqee vavnvtrvii hivaqcheeg
      901 ldsylrsyvk yaykaepyva seyktvheel tksmttilkp sadfltsnkl lkyswfffev
      961 liksmaqhli enskvkllrn qrfsasfhha vetvvnmlmp hitqkyrdnp easknanhsl
     1021 aafikrcftf mdrgfvfkqi nnyiscfapg dpktlfefkf eflrvvcnhe hyiplnlpms
     1081 fgkgrvqryq dlqldysltd efcknhflvg lllrevgnal qefrdvrqia itvlknlmik
     1141 hsfddryvsk ahqariatmy lplfgllien vqrinvkevs pfpvnlssnn akddalnlpt
     1201 asqlvtpqks gntldnnlpk dlfgvisgia spyttstpni nsvrnadsrg slistdsgns
     1261 lterhieksn sldknqqgst lgssvvrydk ldqaeiksll mcflyilrsm sddvlltywn
     1321 katkselmdf ftitevclhq fqymgkryia rnqeglgsiv hdrksqtlpv srnrtgmmha
     1381 rlqqlssldn sltfnhsygh sdadvlhqsl leaniatevc liildtlslf tvafknqllt
     1441 dhghnplmkk vfdvyvcflq knqsetalkn vfvalktliy kfpstfyegr admcsalcye
     1501 ilkycnskls sirteasqll yslmrtnfdy tgkksfvrth lqviisvsql iadvvgiggt
     1561 rfqqslsiin ncansdkmik httfpsdvkd ltkrirtvlm ataqmkehen dpemlvdlqy
     1621 slaksyastp elrktwldsm arihvkngdl seaamcyvhv aalvaeyltr kgmfrqgcta
     1681 frvitpnide easmmedvgm qdvhfnedvl melleqcadg lwkaeryeli adiykliipi
     1741 yekrrdferl ahlydtlhra yskvtevmht gkrllgtyfr vaffgqgffe dedgkeyiyk
     1801 epkltplsei sqrlqklysd kfgsenvkmi qdsgrvnpkd ldskyayiqv thvvpyfeek
     1861 elqerktdfe rthnirrfmf empftqagkr qggveeqckr rtiltaihcf pyvkkripvm
     1921 yqhhtdlnpi evaidemskk vaelrqlcss aevdmiklql klqgsvsvqv nagplayara
     1981 flddtntkry pdnkvkllke vfrqfveacg halgvnerli kedqleyqee mkanyremak
     2041 elseimheqi tpveekasvm pnslhifnai sgtptsttvh gmpnsssva
//
LOCUS       XP_053916811            2082 aa            linear   VRT 09-MAR-2023
DEFINITION  dedicator of cytokinesis protein 9 isoform X9 [Cuculus canorus].
ACCESSION   XP_053916811
VERSION     XP_053916811.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060836.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2082
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2082
                     /product="dedicator of cytokinesis protein 9 isoform X9"
                     /calculated_mol_wt=238117
     Region          57..167
                     /region_name="DOCK_C-D_N"
                     /note="Dedicator of cytokinesis C/D, N terminal;
                     pfam11878"
                     /db_xref="CDD:463380"
     Region          181..304
                     /region_name="PH_DOCK-D"
                     /note="Dedicator of cytokinesis-D subfamily Pleckstrin
                     homology (PH) domain; cd13267"
                     /db_xref="CDD:270087"
     Region          649..838
                     /region_name="C2_Dock-D"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; cd08697"
                     /db_xref="CDD:176079"
     Region          1624..2038
                     /region_name="DHR2_DOCK9"
                     /note="Dock Homology Region 2, a GEF domain, of Class D
                     Dedicator of Cytokinesis 9; cd11698"
                     /db_xref="CDD:212571"
     Site            order(1728,1738,1740..1741,1743..1744,1747..1748,
                     1750..1751,1754..1755)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            order(1762..1765,1767,1796..1797,1799..1802,1804..1805,
                     1824..1826,1843,1845,1874,1876,1883..1884,1890,1929..1930,
                     1933,1947,1949,1953,1956..1958,1961..1964,1966..1967,1970,
                     1998,2016..2017,2019..2020,2023)
                     /site_type="other"
                     /note="Cdc42 binding site [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            1961..1966
                     /site_type="other"
                     /note="nucleotide sensor"
                     /db_xref="CDD:212571"
     CDS             1..2082
                     /gene="DOCK9"
                     /coded_by="XM_054060836.1:436..6684"
                     /db_xref="GeneID:104057297"
ORIGIN      
        1 mgcttsvvlf kgirtvfern cgyickqqge nnaleytafs lpnedsgili hsslakpkli
       61 epidyenviv qrktqilndg lremllfpyd dfqtallkrq sryvhstvpe naekeaqslf
      121 vteciktyns dwhvvnyrye dysgefrqlp skgpkseklp vhlyevdeea dkdedaaslg
      181 sqkggitkqg wlykgnmnsa isvtmrsfkr rffhliqlgd gsynlnfykd ekiskepkgs
      241 ifldscmgvv qnnrvrrfaf elkmqdkssy llaadselem eewintlnki lqlnfeaamq
      301 ekrngeshed deqsrsesls ssfdnyypei akstreaeik lksesrvklf aldpdaqkld
      361 fssiepdvkp feekfgkkil vkcndlsfnl qccvaeneeg pttnvepffv tlslfdiknn
      421 rkisadfhvd lnhtsvrhml ssapqqmmng sgdtlhriqd lhetllqypk qgifsvtcph
      481 tdiflvarie kvlqgsithc aepymkssds sktaqkvlkn akqacqrlgq yrmpfawaar
      541 tlfkdasgtl dknarfsplf rqdsnklsne dmlklladfr kpekmaklpv ilgnldvtid
      601 nvspdfpnyv nssyipmkqf enstktsvaf eieefvpcip rhtqpftiyn nhlyvypkyl
      661 kydgqksfak arniavcief kdsdeedslp lkciygrpgg pvftrsafaa vlhhhqnpef
      721 ydeikielpt qlhekhhllf tfyhvscdss skgstkkkdv vetqvgyswl plikdgrvvt
      781 neqqipvsan lpsgylsyqe vvtgkhsgpe ikwvdggkql lkisthlvst vytqdqhlhn
      841 ffeycqktes garalgtdlv kylkslhame ghvmiaflpt vlnqlfrvlt ratqeevavn
      901 vtrviihiva qcheegldsy lrsyvkyayk aepyvaseyk tvheeltksm ttilkpsadf
      961 ltsnkllkys wfffevliks maqhliensk vkllrnqrfs asfhhavetv vnmlmphitq
     1021 kyrdnpeask nanhslaafi krcftfmdrg fvfkqinnyi scfapgdpkt lfefkfeflr
     1081 vvcnhehyip lnlpmsfgkg rvqryqdlql dysltdefck nhflvglllr evgnalqefr
     1141 dvrqiaitvl knlmikhsfd dryvskahqa riatmylplf gllienvqri nvkevspfpv
     1201 nlssnnakdd alnlptasql vtpqksgntl dnnlpkdlfg visgiaspyt tstpninsvr
     1261 nadsrgslis tdsgnslter hieksnsldk nqqgstlgss vvrydkldqa eiksllmcfl
     1321 yilrsmsddv lltywnkatk selmdfftit evclhqfqym gkryiartgm mharlqqlss
     1381 ldnsltfnhs yghsdadvlh qslleaniat evcliildtl slftvafknq lltdhghnpl
     1441 mkkvfdvyvc flqknqseta lknvfvalkt liykfpstfy egradmcsal cyeilkycns
     1501 klssirteas qllyslmrtn fdytgkksfv rthlqviisv sqliadvvgi ggtrfqqsls
     1561 iinncansdk mikhttfpsd vkdltkrirt vlmataqmke hendpemlvd lqyslaksya
     1621 stpelrktwl dsmarihvkn gdlseaamcy vhvaalvaey ltrkgmfrqg ctafrvitpn
     1681 ideeasmmed vgmqdvhfne dvlmelleqc adglwkaery eliadiykli ipiyekrrdf
     1741 erlahlydtl hrayskvtev mhtgkrllgt yfrvaffgqg ffededgkey iykepkltpl
     1801 seisqrlqkl ysdkfgsenv kmiqdsgrvn pkdldskyay iqvthvvpyf eekelqerkt
     1861 dferthnirr fmfempftqa gkrqggveeq ckrrtiltai hcfpyvkkri pvmyqhhtdl
     1921 npievaidem skkvaelrql cssaevdmik lqlklqgsvs vqvnagplay araflddtnt
     1981 krypdnkvkl lkevfrqfve acghalgvne rlikedqley qeemkanyre makelseimh
     2041 eqitpveeka svmpnslhif naisgtptst tvhgmpnsss va
//
LOCUS       XP_053916817            2074 aa            linear   VRT 09-MAR-2023
DEFINITION  dedicator of cytokinesis protein 9 isoform X10 [Cuculus canorus].
ACCESSION   XP_053916817
VERSION     XP_053916817.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060842.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2074
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2074
                     /product="dedicator of cytokinesis protein 9 isoform X10"
                     /calculated_mol_wt=237017
     Region          57..167
                     /region_name="DOCK_C-D_N"
                     /note="Dedicator of cytokinesis C/D, N terminal;
                     pfam11878"
                     /db_xref="CDD:463380"
     Region          181..304
                     /region_name="PH_DOCK-D"
                     /note="Dedicator of cytokinesis-D subfamily Pleckstrin
                     homology (PH) domain; cd13267"
                     /db_xref="CDD:270087"
     Region          649..838
                     /region_name="C2_Dock-D"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; cd08697"
                     /db_xref="CDD:176079"
     Region          1616..2030
                     /region_name="DHR2_DOCK9"
                     /note="Dock Homology Region 2, a GEF domain, of Class D
                     Dedicator of Cytokinesis 9; cd11698"
                     /db_xref="CDD:212571"
     Site            order(1720,1730,1732..1733,1735..1736,1739..1740,
                     1742..1743,1746..1747)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            order(1754..1757,1759,1788..1789,1791..1794,1796..1797,
                     1816..1818,1835,1837,1866,1868,1875..1876,1882,1921..1922,
                     1925,1939,1941,1945,1948..1950,1953..1956,1958..1959,1962,
                     1990,2008..2009,2011..2012,2015)
                     /site_type="other"
                     /note="Cdc42 binding site [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            1953..1958
                     /site_type="other"
                     /note="nucleotide sensor"
                     /db_xref="CDD:212571"
     CDS             1..2074
                     /gene="DOCK9"
                     /coded_by="XM_054060842.1:436..6660"
                     /db_xref="GeneID:104057297"
ORIGIN      
        1 mgcttsvvlf kgirtvfern cgyickqqge nnaleytafs lpnedsgili hsslakpkli
       61 epidyenviv qrktqilndg lremllfpyd dfqtallkrq sryvhstvpe naekeaqslf
      121 vteciktyns dwhvvnyrye dysgefrqlp skgpkseklp vhlyevdeea dkdedaaslg
      181 sqkggitkqg wlykgnmnsa isvtmrsfkr rffhliqlgd gsynlnfykd ekiskepkgs
      241 ifldscmgvv qnnrvrrfaf elkmqdkssy llaadselem eewintlnki lqlnfeaamq
      301 ekrngeshed deqsrsesls ssfdnyypei akstreaeik lksesrvklf aldpdaqkld
      361 fssiepdvkp feekfgkkil vkcndlsfnl qccvaeneeg pttnvepffv tlslfdiknn
      421 rkisadfhvd lnhtsvrhml ssapqqmmng sgdtlhriqd lhetllqypk qgifsvtcph
      481 tdiflvarie kvlqgsithc aepymkssds sktaqkvlkn akqacqrlgq yrmpfawaar
      541 tlfkdasgtl dknarfsplf rqdsnklsne dmlklladfr kpekmaklpv ilgnldvtid
      601 nvspdfpnyv nssyipmkqf enstktsvaf eieefvpcip rhtqpftiyn nhlyvypkyl
      661 kydgqksfak arniavcief kdsdeedslp lkciygrpgg pvftrsafaa vlhhhqnpef
      721 ydeikielpt qlhekhhllf tfyhvscdss skgstkkkdv vetqvgyswl plikdgrvvt
      781 neqqipvsan lpsgylsyqe vvtgkhsgpe ikwvdggkql lkisthlvst vytqdqhlhn
      841 ffeycqktes garalgtdlv kylkslhame ghvmiaflpt vlnqlfrvlt ratqeevavn
      901 vtrviihiva qcheegldsy lrsyvkyayk aepyvaseyk tvheeltksm ttilkpsadf
      961 ltsnkllkys wfffevliks maqhliensk vkllrnqrfs asfhhavetv vnmlmphitq
     1021 kyrdnpeask nanhslaafi krcftfmdrg fvfkqinnyi scfapgdpkt lfefkfeflr
     1081 vvcnhehyip lnlpmsfgkg rvqryqdlql dysltdefck nhflvglllr evgnalqefr
     1141 dvrqiaitvl knlmikhsfd dryvskahqa riatmylplf gllienvqri nvkevspfpv
     1201 nlssnnakdd alnlptasql vtpqksgntl dnnlpkdlfg visgiaspyt tstpninsvr
     1261 nadsrgslis tdsgnslter hieksnsldk nqqgstlgss vvrydkldqa eiksllmcfl
     1321 yilrsmsddv lltywnkatk selmdfftit evclhqfqym gkryiasvrk issilgisvd
     1381 ngyghsdadv lhqslleani atevcliild tlslftvafk nqlltdhghn plmkkvfdvy
     1441 vcflqknqse talknvfval ktliykfpst fyegradmcs alcyeilkyc nsklssirte
     1501 asqllyslmr tnfdytgkks fvrthlqvii svsqliadvv giggtrfqqs lsiinncans
     1561 dkmikhttfp sdvkdltkri rtvlmataqm kehendpeml vdlqyslaks yastpelrkt
     1621 wldsmarihv kngdlseaam cyvhvaalva eyltrkgmfr qgctafrvit pnideeasmm
     1681 edvgmqdvhf nedvlmelle qcadglwkae ryeliadiyk liipiyekrr dferlahlyd
     1741 tlhrayskvt evmhtgkrll gtyfrvaffg qgffededgk eyiykepklt plseisqrlq
     1801 klysdkfgse nvkmiqdsgr vnpkdldsky ayiqvthvvp yfeekelqer ktdferthni
     1861 rrfmfempft qagkrqggve eqckrrtilt aihcfpyvkk ripvmyqhht dlnpievaid
     1921 emskkvaelr qlcssaevdm iklqlklqgs vsvqvnagpl ayaraflddt ntkrypdnkv
     1981 kllkevfrqf veacghalgv nerlikedql eyqeemkany remakelsei mheqitpvee
     2041 kasvmpnslh ifnaisgtpt sttvhgmpns ssva
//
LOCUS       XP_053916824            2066 aa            linear   VRT 09-MAR-2023
DEFINITION  dedicator of cytokinesis protein 9 isoform X11 [Cuculus canorus].
ACCESSION   XP_053916824
VERSION     XP_053916824.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060849.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2066
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2066
                     /product="dedicator of cytokinesis protein 9 isoform X11"
                     /calculated_mol_wt=236188
     Region          41..151
                     /region_name="DOCK_C-D_N"
                     /note="Dedicator of cytokinesis C/D, N terminal;
                     pfam11878"
                     /db_xref="CDD:463380"
     Region          165..288
                     /region_name="PH_DOCK-D"
                     /note="Dedicator of cytokinesis-D subfamily Pleckstrin
                     homology (PH) domain; cd13267"
                     /db_xref="CDD:270087"
     Region          633..822
                     /region_name="C2_Dock-D"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; cd08697"
                     /db_xref="CDD:176079"
     Region          1608..2022
                     /region_name="DHR2_DOCK9"
                     /note="Dock Homology Region 2, a GEF domain, of Class D
                     Dedicator of Cytokinesis 9; cd11698"
                     /db_xref="CDD:212571"
     Site            order(1712,1722,1724..1725,1727..1728,1731..1732,
                     1734..1735,1738..1739)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            order(1746..1749,1751,1780..1781,1783..1786,1788..1789,
                     1808..1810,1827,1829,1858,1860,1867..1868,1874,1913..1914,
                     1917,1931,1933,1937,1940..1942,1945..1948,1950..1951,1954,
                     1982,2000..2001,2003..2004,2007)
                     /site_type="other"
                     /note="Cdc42 binding site [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            1945..1950
                     /site_type="other"
                     /note="nucleotide sensor"
                     /db_xref="CDD:212571"
     CDS             1..2066
                     /gene="DOCK9"
                     /coded_by="XM_054060849.1:148..6348"
                     /db_xref="GeneID:104057297"
ORIGIN      
        1 malgapetrk ftralskpgt aaelrqsvse vvrgsvllak pkliepidye nvivqrktqi
       61 lndglremll fpyddfqtal lkrqsryvhs tvpenaekea qslfvtecik tynsdwhvvn
      121 yryedysgef rqlpskgpks eklpvhlyev deeadkdeda aslgsqkggi tkqgwlykgn
      181 mnsaisvtmr sfkrrffhli qlgdgsynln fykdekiske pkgsifldsc mgvvqnnrvr
      241 rfafelkmqd kssyllaads elemeewint lnkilqlnfe aamqekrnge sheddeqsrs
      301 eslsssfdny ypeiakstre aeiklksesr vklfaldpda qkldfssiep dvkpfeekfg
      361 kkilvkcndl sfnlqccvae neegpttnve pffvtlslfd iknnrkisad fhvdlnhtsv
      421 rhmlssapqq mmngsgdtlh riqdlhetll qypkqgifsv tcphtdiflv ariekvlqgs
      481 ithcaepymk ssdssktaqk vlknakqacq rlgqyrmpfa waartlfkda sgtldknarf
      541 splfrqdsnk lsnedmlkll adfrkpekma klpvilgnld vtidnvspdf pnyvnssyip
      601 mkqfenstkt svafeieefv pciprhtqpf tiynnhlyvy pkylkydgqk sfakarniav
      661 ciefkdsdee dslplkciyg rpggpvftrs afaavlhhhq npefydeiki elptqlhekh
      721 hllftfyhvs cdssskgstk kkdvvetqvg yswlplikdg rvvtneqqip vsanlpsgyl
      781 syqevvtgkh sgpeikwvdg gkqllkisth lvstvytqdq hlhnffeycq ktesgaralg
      841 tdlvkylksl hameghvmia flptvlnqlf rvltratqee vavnvtrvii hivaqcheeg
      901 ldsylrsyvk yaykaepyva seyktvheel tksmttilkp sadfltsnkl lkyswfffev
      961 liksmaqhli enskvkllrn qrfsasfhha vetvvnmlmp hitqkyrdnp easknanhsl
     1021 aafikrcftf mdrgfvfkqi nnyiscfapg dpktlfefkf eflrvvcnhe hyiplnlpms
     1081 fgkgrvqryq dlqldysltd efcknhflvg lllrevgnal qefrdvrqia itvlknlmik
     1141 hsfddryvsk ahqariatmy lplfgllien vqrinvkevs pfpvnlssnn akddalnlpt
     1201 asqlvtpqks gntldnnlpk dlfgvisgia spyttstpni nsvrnadsrg slistdsgns
     1261 lterhieksn sldknqqgst lgssvvrydk ldqaeiksll mcflyilrsm sddvlltywn
     1321 katkselmdf ftitevclhq fqymgkryia rtgmmharlq qlssldnslt fnhsyghsda
     1381 dvlhqsllea niatevclii ldtlslftva fknqlltdhg hnplmkkvfd vyvcflqknq
     1441 setalknvfv alktliykfp stfyegradm csalcyeilk ycnsklssir teasqllysl
     1501 mrtnfdytgk ksfvrthlqv iisvsqliad vvgiggtrfq qslsiinnca nsdkmikhtt
     1561 fpsdvkdltk rirtvlmata qmkehendpe mlvdlqysla ksyastpelr ktwldsmari
     1621 hvkngdlsea amcyvhvaal vaeyltrkgm frqgctafrv itpnideeas mmedvgmqdv
     1681 hfnedvlmel leqcadglwk aeryeliadi ykliipiyek rrdferlahl ydtlhraysk
     1741 vtevmhtgkr llgtyfrvaf fgqgffeded gkeyiykepk ltplseisqr lqklysdkfg
     1801 senvkmiqds grvnpkdlds kyayiqvthv vpyfeekelq erktdferth nirrfmfemp
     1861 ftqagkrqgg veeqckrrti ltaihcfpyv kkripvmyqh htdlnpieva idemskkvae
     1921 lrqlcssaev dmiklqlklq gsvsvqvnag playarafld dtntkrypdn kvkllkevfr
     1981 qfveacghal gvnerliked qleyqeemka nyremakels eimheqitpv eekasvmpns
     2041 lhifnaisgt ptsttvhgmp nsssva
//
LOCUS       XP_053916830            2066 aa            linear   VRT 09-MAR-2023
DEFINITION  dedicator of cytokinesis protein 9 isoform X12 [Cuculus canorus].
ACCESSION   XP_053916830
VERSION     XP_053916830.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060855.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2066
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2066
                     /product="dedicator of cytokinesis protein 9 isoform X12"
                     /calculated_mol_wt=236340
     Region          41..151
                     /region_name="DOCK_C-D_N"
                     /note="Dedicator of cytokinesis C/D, N terminal;
                     pfam11878"
                     /db_xref="CDD:463380"
     Region          165..288
                     /region_name="PH_DOCK-D"
                     /note="Dedicator of cytokinesis-D subfamily Pleckstrin
                     homology (PH) domain; cd13267"
                     /db_xref="CDD:270087"
     Region          633..822
                     /region_name="C2_Dock-D"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; cd08697"
                     /db_xref="CDD:176079"
     Region          1608..2022
                     /region_name="DHR2_DOCK9"
                     /note="Dock Homology Region 2, a GEF domain, of Class D
                     Dedicator of Cytokinesis 9; cd11698"
                     /db_xref="CDD:212571"
     Site            order(1712,1722,1724..1725,1727..1728,1731..1732,
                     1734..1735,1738..1739)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            order(1746..1749,1751,1780..1781,1783..1786,1788..1789,
                     1808..1810,1827,1829,1858,1860,1867..1868,1874,1913..1914,
                     1917,1931,1933,1937,1940..1942,1945..1948,1950..1951,1954,
                     1982,2000..2001,2003..2004,2007)
                     /site_type="other"
                     /note="Cdc42 binding site [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            1945..1950
                     /site_type="other"
                     /note="nucleotide sensor"
                     /db_xref="CDD:212571"
     CDS             1..2066
                     /gene="DOCK9"
                     /coded_by="XM_054060855.1:158..6358"
                     /db_xref="GeneID:104057297"
ORIGIN      
        1 mqartnrslk kelviespqq skdagpceve vespvvvpak pkliepidye nvivqrktqi
       61 lndglremll fpyddfqtal lkrqsryvhs tvpenaekea qslfvtecik tynsdwhvvn
      121 yryedysgef rqlpskgpks eklpvhlyev deeadkdeda aslgsqkggi tkqgwlykgn
      181 mnsaisvtmr sfkrrffhli qlgdgsynln fykdekiske pkgsifldsc mgvvqnnrvr
      241 rfafelkmqd kssyllaads elemeewint lnkilqlnfe aamqekrnge sheddeqsrs
      301 eslsssfdny ypeiakstre aeiklksesr vklfaldpda qkldfssiep dvkpfeekfg
      361 kkilvkcndl sfnlqccvae neegpttnve pffvtlslfd iknnrkisad fhvdlnhtsv
      421 rhmlssapqq mmngsgdtlh riqdlhetll qypkqgifsv tcphtdiflv ariekvlqgs
      481 ithcaepymk ssdssktaqk vlknakqacq rlgqyrmpfa waartlfkda sgtldknarf
      541 splfrqdsnk lsnedmlkll adfrkpekma klpvilgnld vtidnvspdf pnyvnssyip
      601 mkqfenstkt svafeieefv pciprhtqpf tiynnhlyvy pkylkydgqk sfakarniav
      661 ciefkdsdee dslplkciyg rpggpvftrs afaavlhhhq npefydeiki elptqlhekh
      721 hllftfyhvs cdssskgstk kkdvvetqvg yswlplikdg rvvtneqqip vsanlpsgyl
      781 syqevvtgkh sgpeikwvdg gkqllkisth lvstvytqdq hlhnffeycq ktesgaralg
      841 tdlvkylksl hameghvmia flptvlnqlf rvltratqee vavnvtrvii hivaqcheeg
      901 ldsylrsyvk yaykaepyva seyktvheel tksmttilkp sadfltsnkl lkyswfffev
      961 liksmaqhli enskvkllrn qrfsasfhha vetvvnmlmp hitqkyrdnp easknanhsl
     1021 aafikrcftf mdrgfvfkqi nnyiscfapg dpktlfefkf eflrvvcnhe hyiplnlpms
     1081 fgkgrvqryq dlqldysltd efcknhflvg lllrevgnal qefrdvrqia itvlknlmik
     1141 hsfddryvsk ahqariatmy lplfgllien vqrinvkevs pfpvnlssnn akddalnlpt
     1201 asqlvtpqks gntldnnlpk dlfgvisgia spyttstpni nsvrnadsrg slistdsgns
     1261 lterhieksn sldknqqgst lgssvvrydk ldqaeiksll mcflyilrsm sddvlltywn
     1321 katkselmdf ftitevclhq fqymgkryia rtgmmharlq qlssldnslt fnhsyghsda
     1381 dvlhqsllea niatevclii ldtlslftva fknqlltdhg hnplmkkvfd vyvcflqknq
     1441 setalknvfv alktliykfp stfyegradm csalcyeilk ycnsklssir teasqllysl
     1501 mrtnfdytgk ksfvrthlqv iisvsqliad vvgiggtrfq qslsiinnca nsdkmikhtt
     1561 fpsdvkdltk rirtvlmata qmkehendpe mlvdlqysla ksyastpelr ktwldsmari
     1621 hvkngdlsea amcyvhvaal vaeyltrkgm frqgctafrv itpnideeas mmedvgmqdv
     1681 hfnedvlmel leqcadglwk aeryeliadi ykliipiyek rrdferlahl ydtlhraysk
     1741 vtevmhtgkr llgtyfrvaf fgqgffeded gkeyiykepk ltplseisqr lqklysdkfg
     1801 senvkmiqds grvnpkdlds kyayiqvthv vpyfeekelq erktdferth nirrfmfemp
     1861 ftqagkrqgg veeqckrrti ltaihcfpyv kkripvmyqh htdlnpieva idemskkvae
     1921 lrqlcssaev dmiklqlklq gsvsvqvnag playarafld dtntkrypdn kvkllkevfr
     1981 qfveacghal gvnerliked qleyqeemka nyremakels eimheqitpv eekasvmpns
     2041 lhifnaisgt ptsttvhgmp nsssva
//
LOCUS       XP_053916831            2058 aa            linear   VRT 09-MAR-2023
DEFINITION  dedicator of cytokinesis protein 9 isoform X13 [Cuculus canorus].
ACCESSION   XP_053916831
VERSION     XP_053916831.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060856.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2058
                     /product="dedicator of cytokinesis protein 9 isoform X13"
                     /calculated_mol_wt=235088
     Region          41..151
                     /region_name="DOCK_C-D_N"
                     /note="Dedicator of cytokinesis C/D, N terminal;
                     pfam11878"
                     /db_xref="CDD:463380"
     Region          165..288
                     /region_name="PH_DOCK-D"
                     /note="Dedicator of cytokinesis-D subfamily Pleckstrin
                     homology (PH) domain; cd13267"
                     /db_xref="CDD:270087"
     Region          633..822
                     /region_name="C2_Dock-D"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; cd08697"
                     /db_xref="CDD:176079"
     Region          1600..2014
                     /region_name="DHR2_DOCK9"
                     /note="Dock Homology Region 2, a GEF domain, of Class D
                     Dedicator of Cytokinesis 9; cd11698"
                     /db_xref="CDD:212571"
     Site            order(1704,1714,1716..1717,1719..1720,1723..1724,
                     1726..1727,1730..1731)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            order(1738..1741,1743,1772..1773,1775..1778,1780..1781,
                     1800..1802,1819,1821,1850,1852,1859..1860,1866,1905..1906,
                     1909,1923,1925,1929,1932..1934,1937..1940,1942..1943,1946,
                     1974,1992..1993,1995..1996,1999)
                     /site_type="other"
                     /note="Cdc42 binding site [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            1937..1942
                     /site_type="other"
                     /note="nucleotide sensor"
                     /db_xref="CDD:212571"
     CDS             1..2058
                     /gene="DOCK9"
                     /coded_by="XM_054060856.1:148..6324"
                     /db_xref="GeneID:104057297"
ORIGIN      
        1 malgapetrk ftralskpgt aaelrqsvse vvrgsvllak pkliepidye nvivqrktqi
       61 lndglremll fpyddfqtal lkrqsryvhs tvpenaekea qslfvtecik tynsdwhvvn
      121 yryedysgef rqlpskgpks eklpvhlyev deeadkdeda aslgsqkggi tkqgwlykgn
      181 mnsaisvtmr sfkrrffhli qlgdgsynln fykdekiske pkgsifldsc mgvvqnnrvr
      241 rfafelkmqd kssyllaads elemeewint lnkilqlnfe aamqekrnge sheddeqsrs
      301 eslsssfdny ypeiakstre aeiklksesr vklfaldpda qkldfssiep dvkpfeekfg
      361 kkilvkcndl sfnlqccvae neegpttnve pffvtlslfd iknnrkisad fhvdlnhtsv
      421 rhmlssapqq mmngsgdtlh riqdlhetll qypkqgifsv tcphtdiflv ariekvlqgs
      481 ithcaepymk ssdssktaqk vlknakqacq rlgqyrmpfa waartlfkda sgtldknarf
      541 splfrqdsnk lsnedmlkll adfrkpekma klpvilgnld vtidnvspdf pnyvnssyip
      601 mkqfenstkt svafeieefv pciprhtqpf tiynnhlyvy pkylkydgqk sfakarniav
      661 ciefkdsdee dslplkciyg rpggpvftrs afaavlhhhq npefydeiki elptqlhekh
      721 hllftfyhvs cdssskgstk kkdvvetqvg yswlplikdg rvvtneqqip vsanlpsgyl
      781 syqevvtgkh sgpeikwvdg gkqllkisth lvstvytqdq hlhnffeycq ktesgaralg
      841 tdlvkylksl hameghvmia flptvlnqlf rvltratqee vavnvtrvii hivaqcheeg
      901 ldsylrsyvk yaykaepyva seyktvheel tksmttilkp sadfltsnkl lkyswfffev
      961 liksmaqhli enskvkllrn qrfsasfhha vetvvnmlmp hitqkyrdnp easknanhsl
     1021 aafikrcftf mdrgfvfkqi nnyiscfapg dpktlfefkf eflrvvcnhe hyiplnlpms
     1081 fgkgrvqryq dlqldysltd efcknhflvg lllrevgnal qefrdvrqia itvlknlmik
     1141 hsfddryvsk ahqariatmy lplfgllien vqrinvkevs pfpvnlssnn akddalnlpt
     1201 asqlvtpqks gntldnnlpk dlfgvisgia spyttstpni nsvrnadsrg slistdsgns
     1261 lterhieksn sldknqqgst lgssvvrydk ldqaeiksll mcflyilrsm sddvlltywn
     1321 katkselmdf ftitevclhq fqymgkryia svrkissilg isvdngyghs dadvlhqsll
     1381 eaniatevcl iildtlslft vafknqlltd hghnplmkkv fdvyvcflqk nqsetalknv
     1441 fvalktliyk fpstfyegra dmcsalcyei lkycnsklss irteasqlly slmrtnfdyt
     1501 gkksfvrthl qviisvsqli advvgiggtr fqqslsiinn cansdkmikh ttfpsdvkdl
     1561 tkrirtvlma taqmkehend pemlvdlqys laksyastpe lrktwldsma rihvkngdls
     1621 eaamcyvhva alvaeyltrk gmfrqgctaf rvitpnidee asmmedvgmq dvhfnedvlm
     1681 elleqcadgl wkaeryelia diykliipiy ekrrdferla hlydtlhray skvtevmhtg
     1741 krllgtyfrv affgqgffed edgkeyiyke pkltplseis qrlqklysdk fgsenvkmiq
     1801 dsgrvnpkdl dskyayiqvt hvvpyfeeke lqerktdfer thnirrfmfe mpftqagkrq
     1861 ggveeqckrr tiltaihcfp yvkkripvmy qhhtdlnpie vaidemskkv aelrqlcssa
     1921 evdmiklqlk lqgsvsvqvn agplayaraf lddtntkryp dnkvkllkev frqfveacgh
     1981 algvnerlik edqleyqeem kanyremake lseimheqit pveekasvmp nslhifnais
     2041 gtptsttvhg mpnsssva
//
LOCUS       XP_053916832            2058 aa            linear   VRT 09-MAR-2023
DEFINITION  dedicator of cytokinesis protein 9 isoform X14 [Cuculus canorus].
ACCESSION   XP_053916832
VERSION     XP_053916832.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060857.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2058
                     /product="dedicator of cytokinesis protein 9 isoform X14"
                     /calculated_mol_wt=235240
     Region          41..151
                     /region_name="DOCK_C-D_N"
                     /note="Dedicator of cytokinesis C/D, N terminal;
                     pfam11878"
                     /db_xref="CDD:463380"
     Region          165..288
                     /region_name="PH_DOCK-D"
                     /note="Dedicator of cytokinesis-D subfamily Pleckstrin
                     homology (PH) domain; cd13267"
                     /db_xref="CDD:270087"
     Region          633..822
                     /region_name="C2_Dock-D"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; cd08697"
                     /db_xref="CDD:176079"
     Region          1600..2014
                     /region_name="DHR2_DOCK9"
                     /note="Dock Homology Region 2, a GEF domain, of Class D
                     Dedicator of Cytokinesis 9; cd11698"
                     /db_xref="CDD:212571"
     Site            order(1704,1714,1716..1717,1719..1720,1723..1724,
                     1726..1727,1730..1731)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            order(1738..1741,1743,1772..1773,1775..1778,1780..1781,
                     1800..1802,1819,1821,1850,1852,1859..1860,1866,1905..1906,
                     1909,1923,1925,1929,1932..1934,1937..1940,1942..1943,1946,
                     1974,1992..1993,1995..1996,1999)
                     /site_type="other"
                     /note="Cdc42 binding site [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            1937..1942
                     /site_type="other"
                     /note="nucleotide sensor"
                     /db_xref="CDD:212571"
     CDS             1..2058
                     /gene="DOCK9"
                     /coded_by="XM_054060857.1:158..6334"
                     /db_xref="GeneID:104057297"
ORIGIN      
        1 mqartnrslk kelviespqq skdagpceve vespvvvpak pkliepidye nvivqrktqi
       61 lndglremll fpyddfqtal lkrqsryvhs tvpenaekea qslfvtecik tynsdwhvvn
      121 yryedysgef rqlpskgpks eklpvhlyev deeadkdeda aslgsqkggi tkqgwlykgn
      181 mnsaisvtmr sfkrrffhli qlgdgsynln fykdekiske pkgsifldsc mgvvqnnrvr
      241 rfafelkmqd kssyllaads elemeewint lnkilqlnfe aamqekrnge sheddeqsrs
      301 eslsssfdny ypeiakstre aeiklksesr vklfaldpda qkldfssiep dvkpfeekfg
      361 kkilvkcndl sfnlqccvae neegpttnve pffvtlslfd iknnrkisad fhvdlnhtsv
      421 rhmlssapqq mmngsgdtlh riqdlhetll qypkqgifsv tcphtdiflv ariekvlqgs
      481 ithcaepymk ssdssktaqk vlknakqacq rlgqyrmpfa waartlfkda sgtldknarf
      541 splfrqdsnk lsnedmlkll adfrkpekma klpvilgnld vtidnvspdf pnyvnssyip
      601 mkqfenstkt svafeieefv pciprhtqpf tiynnhlyvy pkylkydgqk sfakarniav
      661 ciefkdsdee dslplkciyg rpggpvftrs afaavlhhhq npefydeiki elptqlhekh
      721 hllftfyhvs cdssskgstk kkdvvetqvg yswlplikdg rvvtneqqip vsanlpsgyl
      781 syqevvtgkh sgpeikwvdg gkqllkisth lvstvytqdq hlhnffeycq ktesgaralg
      841 tdlvkylksl hameghvmia flptvlnqlf rvltratqee vavnvtrvii hivaqcheeg
      901 ldsylrsyvk yaykaepyva seyktvheel tksmttilkp sadfltsnkl lkyswfffev
      961 liksmaqhli enskvkllrn qrfsasfhha vetvvnmlmp hitqkyrdnp easknanhsl
     1021 aafikrcftf mdrgfvfkqi nnyiscfapg dpktlfefkf eflrvvcnhe hyiplnlpms
     1081 fgkgrvqryq dlqldysltd efcknhflvg lllrevgnal qefrdvrqia itvlknlmik
     1141 hsfddryvsk ahqariatmy lplfgllien vqrinvkevs pfpvnlssnn akddalnlpt
     1201 asqlvtpqks gntldnnlpk dlfgvisgia spyttstpni nsvrnadsrg slistdsgns
     1261 lterhieksn sldknqqgst lgssvvrydk ldqaeiksll mcflyilrsm sddvlltywn
     1321 katkselmdf ftitevclhq fqymgkryia svrkissilg isvdngyghs dadvlhqsll
     1381 eaniatevcl iildtlslft vafknqlltd hghnplmkkv fdvyvcflqk nqsetalknv
     1441 fvalktliyk fpstfyegra dmcsalcyei lkycnsklss irteasqlly slmrtnfdyt
     1501 gkksfvrthl qviisvsqli advvgiggtr fqqslsiinn cansdkmikh ttfpsdvkdl
     1561 tkrirtvlma taqmkehend pemlvdlqys laksyastpe lrktwldsma rihvkngdls
     1621 eaamcyvhva alvaeyltrk gmfrqgctaf rvitpnidee asmmedvgmq dvhfnedvlm
     1681 elleqcadgl wkaeryelia diykliipiy ekrrdferla hlydtlhray skvtevmhtg
     1741 krllgtyfrv affgqgffed edgkeyiyke pkltplseis qrlqklysdk fgsenvkmiq
     1801 dsgrvnpkdl dskyayiqvt hvvpyfeeke lqerktdfer thnirrfmfe mpftqagkrq
     1861 ggveeqckrr tiltaihcfp yvkkripvmy qhhtdlnpie vaidemskkv aelrqlcssa
     1921 evdmiklqlk lqgsvsvqvn agplayaraf lddtntkryp dnkvkllkev frqfveacgh
     1981 algvnerlik edqleyqeem kanyremake lseimheqit pveekasvmp nslhifnais
     2041 gtptsttvhg mpnsssva
//
LOCUS       XP_053916833            2101 aa            linear   VRT 09-MAR-2023
DEFINITION  dedicator of cytokinesis protein 9 isoform X15 [Cuculus canorus].
ACCESSION   XP_053916833
VERSION     XP_053916833.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060858.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2101
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2101
                     /product="dedicator of cytokinesis protein 9 isoform X15"
                     /calculated_mol_wt=240358
     Region          41..151
                     /region_name="DOCK_C-D_N"
                     /note="Dedicator of cytokinesis C/D, N terminal;
                     pfam11878"
                     /db_xref="CDD:463380"
     Region          165..288
                     /region_name="PH_DOCK-D"
                     /note="Dedicator of cytokinesis-D subfamily Pleckstrin
                     homology (PH) domain; cd13267"
                     /db_xref="CDD:270087"
     Region          633..822
                     /region_name="C2_Dock-D"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; cd08697"
                     /db_xref="CDD:176079"
     Region          1631..2057
                     /region_name="DHR2_DOCK9"
                     /note="Dock Homology Region 2, a GEF domain, of Class D
                     Dedicator of Cytokinesis 9; cd11698"
                     /db_xref="CDD:212571"
     Site            order(1735,1745,1747..1748,1750..1751,1754..1755,
                     1757..1758,1761..1762)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            order(1769..1772,1774,1815..1816,1818..1821,1823..1824,
                     1843..1845,1862,1864,1893,1895,1902..1903,1909,1948..1949,
                     1952,1966,1968,1972,1975..1977,1980..1983,1985..1986,1989,
                     2017,2035..2036,2038..2039,2042)
                     /site_type="other"
                     /note="Cdc42 binding site [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            1980..1985
                     /site_type="other"
                     /note="nucleotide sensor"
                     /db_xref="CDD:212571"
     CDS             1..2101
                     /gene="DOCK9"
                     /coded_by="XM_054060858.1:158..6463"
                     /db_xref="GeneID:104057297"
ORIGIN      
        1 mqartnrslk kelviespqq skdagpceve vespvvvpak pkliepidye nvivqrktqi
       61 lndglremll fpyddfqtal lkrqsryvhs tvpenaekea qslfvtecik tynsdwhvvn
      121 yryedysgef rqlpskgpks eklpvhlyev deeadkdeda aslgsqkggi tkqgwlykgn
      181 mnsaisvtmr sfkrrffhli qlgdgsynln fykdekiske pkgsifldsc mgvvqnnrvr
      241 rfafelkmqd kssyllaads elemeewint lnkilqlnfe aamqekrnge sheddeqsrs
      301 eslsssfdny ypeiakstre aeiklksesr vklfaldpda qkldfssiep dvkpfeekfg
      361 kkilvkcndl sfnlqccvae neegpttnve pffvtlslfd iknnrkisad fhvdlnhtsv
      421 rhmlssapqq mmngsgdtlh riqdlhetll qypkqgifsv tcphtdiflv ariekvlqgs
      481 ithcaepymk ssdssktaqk vlknakqacq rlgqyrmpfa waartlfkda sgtldknarf
      541 splfrqdsnk lsnedmlkll adfrkpekma klpvilgnld vtidnvspdf pnyvnssyip
      601 mkqfenstkt svafeieefv pciprhtqpf tiynnhlyvy pkylkydgqk sfakarniav
      661 ciefkdsdee dslplkciyg rpggpvftrs afaavlhhhq npefydeiki elptqlhekh
      721 hllftfyhvs cdssskgstk kkdvvetqvg yswlplikdg rvvtneqqip vsanlpsgyl
      781 syqevvtgkh sgpeikwvdg gkqllkisth lvstvytqdq hlhnffeycq ktesgaralg
      841 tdlvkylksl hameghvmia flptvlnqlf rvltratqee vavnvtrvii hivaqcheeg
      901 ldsylrsyvk yaykaepyva seyktvheel tksmttilkp sadfltsnkl lkyswfffev
      961 liksmaqhli enskvkllrn qrfsasfhha vetvvnmlmp hitqkyrdnp easknanhsl
     1021 aafikrcftf mdrgfvfkqi nnyiscfapg dpktlfefkf eflrvvcnhe hyiplnlpms
     1081 fgkgrvqryq dlqldysltd efcknhflvg lllrevgnal qefrdvrqia itvlknlmik
     1141 hsfddryvsk ahqariatmy lplfgllien vqrinvkevs pfpvnlssnn akddalnlpt
     1201 asqlvtpqks gntldnnlpk dlfgvisgia spyttstpni nsvrnadsrg slistdsgns
     1261 lterhieksn sldknqqgst lgssvvrydk ldqaeiksll mcflyilrsm sddvlltywn
     1321 katkselmdf ftitevclhq fqymgkryia rnqeglgsiv hdrksqtlpv srnrtgmmha
     1381 rlqqlssldn sltfnhsygh sdadvlhqsl leaniatevc liildtlslf tvafknqllt
     1441 dhghnplmkk vfdvyvcflq knqsetalkn vfvalktliy kfpstfyegr admcsalcye
     1501 ilkycnskls sirteasqll yslmrtnfdy tgkksfvrth lqviisvsql iadvvgiggt
     1561 rfqqslsiin ncansdkmik httfpsdvkd ltkrirtvlm ataqmkehen dpemlvdlqy
     1621 slaksyastp elrktwldsm arihvkngdl seaamcyvhv aalvaeyltr kgmfrqgcta
     1681 frvitpnide easmmedvgm qdvhfnedvl melleqcadg lwkaeryeli adiykliipi
     1741 yekrrdferl ahlydtlhra yskvtevmht gkrllgtyfr vaffgqqyqf tdsetdvegf
     1801 fededgkeyi ykepkltpls eisqrlqkly sdkfgsenvk miqdsgrvnp kdldskyayi
     1861 qvthvvpyfe ekelqerktd ferthnirrf mfempftqag krqggveeqc krrtiltaih
     1921 cfpyvkkrip vmyqhhtdln pievaidems kkvaelrqlc ssaevdmikl qlklqgsvsv
     1981 qvnagplaya raflddtntk rypdnkvkll kevfrqfvea cghalgvner likedqleyq
     2041 eemkanyrem akelseimhe qitpveekas vmpnslhifn aisgtptstt vhgmpnsssv
     2101 a
//
LOCUS       XP_053916834            2086 aa            linear   VRT 09-MAR-2023
DEFINITION  dedicator of cytokinesis protein 9 isoform X16 [Cuculus canorus].
ACCESSION   XP_053916834
VERSION     XP_053916834.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060859.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2086
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2086
                     /product="dedicator of cytokinesis protein 9 isoform X16"
                     /calculated_mol_wt=238461
     Region          57..167
                     /region_name="DOCK_C-D_N"
                     /note="Dedicator of cytokinesis C/D, N terminal;
                     pfam11878"
                     /db_xref="CDD:463380"
     Region          181..304
                     /region_name="PH_DOCK-D"
                     /note="Dedicator of cytokinesis-D subfamily Pleckstrin
                     homology (PH) domain; cd13267"
                     /db_xref="CDD:270087"
     Region          649..838
                     /region_name="C2_Dock-D"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; cd08697"
                     /db_xref="CDD:176079"
     Region          1616..2042
                     /region_name="DHR2_DOCK9"
                     /note="Dock Homology Region 2, a GEF domain, of Class D
                     Dedicator of Cytokinesis 9; cd11698"
                     /db_xref="CDD:212571"
     Site            order(1720,1730,1732..1733,1735..1736,1739..1740,
                     1742..1743,1746..1747)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            order(1754..1757,1759,1800..1801,1803..1806,1808..1809,
                     1828..1830,1847,1849,1878,1880,1887..1888,1894,1933..1934,
                     1937,1951,1953,1957,1960..1962,1965..1968,1970..1971,1974,
                     2002,2020..2021,2023..2024,2027)
                     /site_type="other"
                     /note="Cdc42 binding site [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            1965..1970
                     /site_type="other"
                     /note="nucleotide sensor"
                     /db_xref="CDD:212571"
     CDS             1..2086
                     /gene="DOCK9"
                     /coded_by="XM_054060859.1:436..6696"
                     /db_xref="GeneID:104057297"
ORIGIN      
        1 mgcttsvvlf kgirtvfern cgyickqqge nnaleytafs lpnedsgili hsslakpkli
       61 epidyenviv qrktqilndg lremllfpyd dfqtallkrq sryvhstvpe naekeaqslf
      121 vteciktyns dwhvvnyrye dysgefrqlp skgpkseklp vhlyevdeea dkdedaaslg
      181 sqkggitkqg wlykgnmnsa isvtmrsfkr rffhliqlgd gsynlnfykd ekiskepkgs
      241 ifldscmgvv qnnrvrrfaf elkmqdkssy llaadselem eewintlnki lqlnfeaamq
      301 ekrngeshed deqsrsesls ssfdnyypei akstreaeik lksesrvklf aldpdaqkld
      361 fssiepdvkp feekfgkkil vkcndlsfnl qccvaeneeg pttnvepffv tlslfdiknn
      421 rkisadfhvd lnhtsvrhml ssapqqmmng sgdtlhriqd lhetllqypk qgifsvtcph
      481 tdiflvarie kvlqgsithc aepymkssds sktaqkvlkn akqacqrlgq yrmpfawaar
      541 tlfkdasgtl dknarfsplf rqdsnklsne dmlklladfr kpekmaklpv ilgnldvtid
      601 nvspdfpnyv nssyipmkqf enstktsvaf eieefvpcip rhtqpftiyn nhlyvypkyl
      661 kydgqksfak arniavcief kdsdeedslp lkciygrpgg pvftrsafaa vlhhhqnpef
      721 ydeikielpt qlhekhhllf tfyhvscdss skgstkkkdv vetqvgyswl plikdgrvvt
      781 neqqipvsan lpsgylsyqe vvtgkhsgpe ikwvdggkql lkisthlvst vytqdqhlhn
      841 ffeycqktes garalgtdlv kylkslhame ghvmiaflpt vlnqlfrvlt ratqeevavn
      901 vtrviihiva qcheegldsy lrsyvkyayk aepyvaseyk tvheeltksm ttilkpsadf
      961 ltsnkllkys wfffevliks maqhliensk vkllrnqrfs asfhhavetv vnmlmphitq
     1021 kyrdnpeask nanhslaafi krcftfmdrg fvfkqinnyi scfapgdpkt lfefkfeflr
     1081 vvcnhehyip lnlpmsfgkg rvqryqdlql dysltdefck nhflvglllr evgnalqefr
     1141 dvrqiaitvl knlmikhsfd dryvskahqa riatmylplf gllienvqri nvkevspfpv
     1201 nlssnnakdd alnlptasql vtpqksgntl dnnlpkdlfg visgiaspyt tstpninsvr
     1261 nadsrgslis tdsgnslter hieksnsldk nqqgstlgss vvrydkldqa eiksllmcfl
     1321 yilrsmsddv lltywnkatk selmdfftit evclhqfqym gkryiasvrk issilgisvd
     1381 ngyghsdadv lhqslleani atevcliild tlslftvafk nqlltdhghn plmkkvfdvy
     1441 vcflqknqse talknvfval ktliykfpst fyegradmcs alcyeilkyc nsklssirte
     1501 asqllyslmr tnfdytgkks fvrthlqvii svsqliadvv giggtrfqqs lsiinncans
     1561 dkmikhttfp sdvkdltkri rtvlmataqm kehendpeml vdlqyslaks yastpelrkt
     1621 wldsmarihv kngdlseaam cyvhvaalva eyltrkgmfr qgctafrvit pnideeasmm
     1681 edvgmqdvhf nedvlmelle qcadglwkae ryeliadiyk liipiyekrr dferlahlyd
     1741 tlhrayskvt evmhtgkrll gtyfrvaffg qqyqftdset dvegffeded gkeyiykepk
     1801 ltplseisqr lqklysdkfg senvkmiqds grvnpkdlds kyayiqvthv vpyfeekelq
     1861 erktdferth nirrfmfemp ftqagkrqgg veeqckrrti ltaihcfpyv kkripvmyqh
     1921 htdlnpieva idemskkvae lrqlcssaev dmiklqlklq gsvsvqvnag playarafld
     1981 dtntkrypdn kvkllkevfr qfveacghal gvnerliked qleyqeemka nyremakels
     2041 eimheqitpv eekasvmpns lhifnaisgt ptsttvhgmp nsssva
//
LOCUS       XP_053916835            2070 aa            linear   VRT 09-MAR-2023
DEFINITION  dedicator of cytokinesis protein 9 isoform X17 [Cuculus canorus].
ACCESSION   XP_053916835
VERSION     XP_053916835.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060860.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2070
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2070
                     /product="dedicator of cytokinesis protein 9 isoform X17"
                     /calculated_mol_wt=236684
     Region          41..151
                     /region_name="DOCK_C-D_N"
                     /note="Dedicator of cytokinesis C/D, N terminal;
                     pfam11878"
                     /db_xref="CDD:463380"
     Region          165..288
                     /region_name="PH_DOCK-D"
                     /note="Dedicator of cytokinesis-D subfamily Pleckstrin
                     homology (PH) domain; cd13267"
                     /db_xref="CDD:270087"
     Region          633..822
                     /region_name="C2_Dock-D"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; cd08697"
                     /db_xref="CDD:176079"
     Region          1600..2026
                     /region_name="DHR2_DOCK9"
                     /note="Dock Homology Region 2, a GEF domain, of Class D
                     Dedicator of Cytokinesis 9; cd11698"
                     /db_xref="CDD:212571"
     Site            order(1704,1714,1716..1717,1719..1720,1723..1724,
                     1726..1727,1730..1731)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            order(1738..1741,1743,1784..1785,1787..1790,1792..1793,
                     1812..1814,1831,1833,1862,1864,1871..1872,1878,1917..1918,
                     1921,1935,1937,1941,1944..1946,1949..1952,1954..1955,1958,
                     1986,2004..2005,2007..2008,2011)
                     /site_type="other"
                     /note="Cdc42 binding site [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            1949..1954
                     /site_type="other"
                     /note="nucleotide sensor"
                     /db_xref="CDD:212571"
     CDS             1..2070
                     /gene="DOCK9"
                     /coded_by="XM_054060860.1:158..6370"
                     /db_xref="GeneID:104057297"
ORIGIN      
        1 mqartnrslk kelviespqq skdagpceve vespvvvpak pkliepidye nvivqrktqi
       61 lndglremll fpyddfqtal lkrqsryvhs tvpenaekea qslfvtecik tynsdwhvvn
      121 yryedysgef rqlpskgpks eklpvhlyev deeadkdeda aslgsqkggi tkqgwlykgn
      181 mnsaisvtmr sfkrrffhli qlgdgsynln fykdekiske pkgsifldsc mgvvqnnrvr
      241 rfafelkmqd kssyllaads elemeewint lnkilqlnfe aamqekrnge sheddeqsrs
      301 eslsssfdny ypeiakstre aeiklksesr vklfaldpda qkldfssiep dvkpfeekfg
      361 kkilvkcndl sfnlqccvae neegpttnve pffvtlslfd iknnrkisad fhvdlnhtsv
      421 rhmlssapqq mmngsgdtlh riqdlhetll qypkqgifsv tcphtdiflv ariekvlqgs
      481 ithcaepymk ssdssktaqk vlknakqacq rlgqyrmpfa waartlfkda sgtldknarf
      541 splfrqdsnk lsnedmlkll adfrkpekma klpvilgnld vtidnvspdf pnyvnssyip
      601 mkqfenstkt svafeieefv pciprhtqpf tiynnhlyvy pkylkydgqk sfakarniav
      661 ciefkdsdee dslplkciyg rpggpvftrs afaavlhhhq npefydeiki elptqlhekh
      721 hllftfyhvs cdssskgstk kkdvvetqvg yswlplikdg rvvtneqqip vsanlpsgyl
      781 syqevvtgkh sgpeikwvdg gkqllkisth lvstvytqdq hlhnffeycq ktesgaralg
      841 tdlvkylksl hameghvmia flptvlnqlf rvltratqee vavnvtrvii hivaqcheeg
      901 ldsylrsyvk yaykaepyva seyktvheel tksmttilkp sadfltsnkl lkyswfffev
      961 liksmaqhli enskvkllrn qrfsasfhha vetvvnmlmp hitqkyrdnp easknanhsl
     1021 aafikrcftf mdrgfvfkqi nnyiscfapg dpktlfefkf eflrvvcnhe hyiplnlpms
     1081 fgkgrvqryq dlqldysltd efcknhflvg lllrevgnal qefrdvrqia itvlknlmik
     1141 hsfddryvsk ahqariatmy lplfgllien vqrinvkevs pfpvnlssnn akddalnlpt
     1201 asqlvtpqks gntldnnlpk dlfgvisgia spyttstpni nsvrnadsrg slistdsgns
     1261 lterhieksn sldknqqgst lgssvvrydk ldqaeiksll mcflyilrsm sddvlltywn
     1321 katkselmdf ftitevclhq fqymgkryia svrkissilg isvdngyghs dadvlhqsll
     1381 eaniatevcl iildtlslft vafknqlltd hghnplmkkv fdvyvcflqk nqsetalknv
     1441 fvalktliyk fpstfyegra dmcsalcyei lkycnsklss irteasqlly slmrtnfdyt
     1501 gkksfvrthl qviisvsqli advvgiggtr fqqslsiinn cansdkmikh ttfpsdvkdl
     1561 tkrirtvlma taqmkehend pemlvdlqys laksyastpe lrktwldsma rihvkngdls
     1621 eaamcyvhva alvaeyltrk gmfrqgctaf rvitpnidee asmmedvgmq dvhfnedvlm
     1681 elleqcadgl wkaeryelia diykliipiy ekrrdferla hlydtlhray skvtevmhtg
     1741 krllgtyfrv affgqqyqft dsetdvegff ededgkeyiy kepkltplse isqrlqklys
     1801 dkfgsenvkm iqdsgrvnpk dldskyayiq vthvvpyfee kelqerktdf erthnirrfm
     1861 fempftqagk rqggveeqck rrtiltaihc fpyvkkripv myqhhtdlnp ievaidemsk
     1921 kvaelrqlcs saevdmiklq lklqgsvsvq vnagplayar aflddtntkr ypdnkvkllk
     1981 evfrqfveac ghalgvnerl ikedqleyqe emkanyrema kelseimheq itpveekasv
     2041 mpnslhifna isgtptsttv hgmpnsssva
//
LOCUS       XP_053916836            2080 aa            linear   VRT 09-MAR-2023
DEFINITION  dedicator of cytokinesis protein 9 isoform X18 [Cuculus canorus].
ACCESSION   XP_053916836
VERSION     XP_053916836.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060861.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2080
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2080
                     /product="dedicator of cytokinesis protein 9 isoform X18"
                     /calculated_mol_wt=237774
     Region          41..151
                     /region_name="DOCK_C-D_N"
                     /note="Dedicator of cytokinesis C/D, N terminal;
                     pfam11878"
                     /db_xref="CDD:463380"
     Region          165..288
                     /region_name="PH_DOCK-D"
                     /note="Dedicator of cytokinesis-D subfamily Pleckstrin
                     homology (PH) domain; cd13267"
                     /db_xref="CDD:270087"
     Region          633..822
                     /region_name="C2_Dock-D"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; cd08697"
                     /db_xref="CDD:176079"
     Region          1608..2036
                     /region_name="DHR2_DOCK9"
                     /note="Dock Homology Region 2, a GEF domain, of Class D
                     Dedicator of Cytokinesis 9; cd11698"
                     /db_xref="CDD:212571"
     Site            order(1712,1722,1724..1725,1727..1728,1731..1732,
                     1734..1735,1738..1739)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            order(1746..1749,1751,1794..1795,1797..1800,1802..1803,
                     1822..1824,1841,1843,1872,1874,1881..1882,1888,1927..1928,
                     1931,1945,1947,1951,1954..1956,1959..1962,1964..1965,1968,
                     1996,2014..2015,2017..2018,2021)
                     /site_type="other"
                     /note="Cdc42 binding site [polypeptide binding]"
                     /db_xref="CDD:212571"
     Site            1959..1964
                     /site_type="other"
                     /note="nucleotide sensor"
                     /db_xref="CDD:212571"
     CDS             1..2080
                     /gene="DOCK9"
                     /coded_by="XM_054060861.1:148..6390"
                     /db_xref="GeneID:104057297"
ORIGIN      
        1 malgapetrk ftralskpgt aaelrqsvse vvrgsvllak pkliepidye nvivqrktqi
       61 lndglremll fpyddfqtal lkrqsryvhs tvpenaekea qslfvtecik tynsdwhvvn
      121 yryedysgef rqlpskgpks eklpvhlyev deeadkdeda aslgsqkggi tkqgwlykgn
      181 mnsaisvtmr sfkrrffhli qlgdgsynln fykdekiske pkgsifldsc mgvvqnnrvr
      241 rfafelkmqd kssyllaads elemeewint lnkilqlnfe aamqekrnge sheddeqsrs
      301 eslsssfdny ypeiakstre aeiklksesr vklfaldpda qkldfssiep dvkpfeekfg
      361 kkilvkcndl sfnlqccvae neegpttnve pffvtlslfd iknnrkisad fhvdlnhtsv
      421 rhmlssapqq mmngsgdtlh riqdlhetll qypkqgifsv tcphtdiflv ariekvlqgs
      481 ithcaepymk ssdssktaqk vlknakqacq rlgqyrmpfa waartlfkda sgtldknarf
      541 splfrqdsnk lsnedmlkll adfrkpekma klpvilgnld vtidnvspdf pnyvnssyip
      601 mkqfenstkt svafeieefv pciprhtqpf tiynnhlyvy pkylkydgqk sfakarniav
      661 ciefkdsdee dslplkciyg rpggpvftrs afaavlhhhq npefydeiki elptqlhekh
      721 hllftfyhvs cdssskgstk kkdvvetqvg yswlplikdg rvvtneqqip vsanlpsgyl
      781 syqevvtgkh sgpeikwvdg gkqllkisth lvstvytqdq hlhnffeycq ktesgaralg
      841 tdlvkylksl hameghvmia flptvlnqlf rvltratqee vavnvtrvii hivaqcheeg
      901 ldsylrsyvk yaykaepyva seyktvheel tksmttilkp sadfltsnkl lkyswfffev
      961 liksmaqhli enskvkllrn qrfsasfhha vetvvnmlmp hitqkyrdnp easknanhsl
     1021 aafikrcftf mdrgfvfkqi nnyiscfapg dpktlfefkf eflrvvcnhe hyiplnlpms
     1081 fgkgrvqryq dlqldysltd efcknhflvg lllrevgnal qefrdvrqia itvlknlmik
     1141 hsfddryvsk ahqariatmy lplfgllien vqrinvkevs pfpvnlssnn akddalnlpt
     1201 asqlvtpqks gntldnnlpk dlfgvisgia spyttstpni nsvrnadsrg slistdsgns
     1261 lterhieksn sldknqqgst lgssvvrydk ldqaeiksll mcflyilrsm sddvlltywn
     1321 katkselmdf ftitevclhq fqymgkryia rtgmmharlq qlssldnslt fnhsyghsda
     1381 dvlhqsllea niatevclii ldtlslftva fknqlltdhg hnplmkkvfd vyvcflqknq
     1441 setalknvfv alktliykfp stfyegradm csalcyeilk ycnsklssir teasqllysl
     1501 mrtnfdytgk ksfvrthlqv iisvsqliad vvgiggtrfq qslsiinnca nsdkmikhtt
     1561 fpsdvkdltk rirtvlmata qmkehendpe mlvdlqysla ksyastpelr ktwldsmari
     1621 hvkngdlsea amcyvhvaal vaeyltrkgm frqgctafrv itpnideeas mmedvgmqdv
     1681 hfnedvlmel leqcadglwk aeryeliadi ykliipiyek rrdferlahl ydtlhraysk
     1741 vtevmhtgkr llgtyfrvaf fgqaaqyqft dsetdvegff ededgkeyiy kepkltplse
     1801 isqrlqklys dkfgsenvkm iqdsgrvnpk dldskyayiq vthvvpyfee kelqerktdf
     1861 erthnirrfm fempftqagk rqggveeqck rrtiltaihc fpyvkkripv myqhhtdlnp
     1921 ievaidemsk kvaelrqlcs saevdmiklq lklqgsvsvq vnagplayar aflddtntkr
     1981 ypdnkvkllk evfrqfveac ghalgvnerl ikedqleyqe emkanyrema kelseimheq
     2041 itpveekasv mpnslhifna isgtptsttv hgmpnsssva
//
LOCUS       XP_009554262             861 aa            linear   VRT 09-MAR-2023
DEFINITION  Fanconi anemia group B protein [Cuculus canorus].
ACCESSION   XP_009554262
VERSION     XP_009554262.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009555967.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554262.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..861
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..861
                     /product="Fanconi anemia group B protein"
                     /calculated_mol_wt=96276
     CDS             1..861
                     /gene="FANCB"
                     /coded_by="XM_009555967.2:446..3031"
                     /db_xref="GeneID:104054899"
ORIGIN      
        1 mllgeqflsy ngevllfwls npkrvegtad ktmnlcvrrm afnrdtklfv qkssgvfsmr
       61 ashfkieiic cscttdsrtg iilpcilmkk qkhnnvvkyl llllhssnqf eqsfhfkldy
      121 elkedirlft gpsvlwrhan klfyisantc tvlsapiqls svvwtgeied egavvlgvkn
      181 aclseseded efstsdraiw gteffgyaie tqkmlsgtcf mphayskvvs svyicknetl
      241 kkqlrislva vthknqliwf qdglpkgvce lpyekpcsvk tavtstndll fvvsfasgnv
      301 cvvqrrdslq vaskwqkvks vlvddfigsg seqllllfkd dsstdalstf eitdlgkvnc
      361 asginykhnv ptaeglqeng lltvqalekr lqagftsvre lqqhlglkkr vilqscrall
      421 dlvegrthvl paakeaglvs lwddventph slsketssls evqehfvkkl wqrvvgdnlv
      481 vgveltelfy lslsdvslsl vmdrdfslis pvikcrnkim klnkafsals vsssqieppp
      541 kkmkmdlhsk ndlrktfpkr ysgvqldgar tviavtdlsp llafhrvccv vllhakkhkh
      601 wddssqeskk iavlcgkifl sledisngky svkllrdnsy ctgsvedila vlavsvrfsf
      661 qivssdctlt pvnswllgem ectpfkechd nifchkagnv ygtvfnwtlk npfegvltlf
      721 crnltvlfqc lhsltrvlpp scdvkllrsg skgvlteqfa lalekemlts rsslfskesk
      781 aensligrse pskkisdvpv apsldseegv refrkkhqne reecvlrmnq tmngalyrea
      841 alktaaaqls tdmtawrlck s
//
LOCUS       XP_053916861             513 aa            linear   VRT 09-MAR-2023
DEFINITION  motile sperm domain-containing protein 2 [Cuculus canorus].
ACCESSION   XP_053916861
VERSION     XP_053916861.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060886.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..513
                     /product="motile sperm domain-containing protein 2"
                     /calculated_mol_wt=59024
     Region          92..233
                     /region_name="SEC14"
                     /note="Sec14p-like lipid-binding domain; cd00170"
                     /db_xref="CDD:469559"
     Region          324..428
                     /region_name="Motile_Sperm"
                     /note="MSP (Major sperm protein) domain; pfam00635"
                     /db_xref="CDD:459882"
     CDS             1..513
                     /gene="MOSPD2"
                     /coded_by="XM_054060886.1:74..1615"
                     /db_xref="GeneID:104056918"
ORIGIN      
        1 maeqrevkaa lvsetrrrfe aeylpdksek ydsrdverlq qddkwvdsyl iwrhdvvddt
       61 lkmidesfqw rkeytvndls esvlpkwlfe sgvlflhgyd kegyklfwfr vkhhtkdskq
      121 qldkkklvaf wlehyakrdh gkpltvvfdm aetgishidl dfvrfivscf tdyypnfltk
      181 ivifempwim naafkivkgw lgpeaisllk ftnkndvqey isgeylpphm ggtdcfkysy
      241 pplvdddfqt plcengpits edeheskeei dadtkeagep neeqnlnqkk vnsieqisks
      301 eetdkteikp knakkalttf kgpllhispa eelyfgsket gekkclivlt nvtknivafk
      361 vrttapekyr vkpsnsscep gtsldiivsl hggvaaslqd rflimaaemd qssgagvpel
      421 tqfwkevprt kvmehrlrch vvesskpssl tlkdntlnip aktnedlhiq lthllqinkr
      481 lqeqmdrclw fqqlsvgvll lsvtivafcf yla
//
LOCUS       XP_053916876            2256 aa            linear   VRT 09-MAR-2023
DEFINITION  basic helix-loop-helix domain-containing protein USF3 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053916876
VERSION     XP_053916876.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060901.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2256
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2256
                     /product="basic helix-loop-helix domain-containing protein
                     USF3 isoform X1"
                     /calculated_mol_wt=241186
     Region          34..98
                     /region_name="bHLHzip_USF3"
                     /note="basic Helix-Loop-Helix-zipper (bHLHzip) domain
                     found in basic helix-loop-helix domain-containing protein
                     USF3 and similar proteins; cd18910"
                     /db_xref="CDD:381480"
     Site            order(42..43,45..46,49..50,54,73..74)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381480"
     Site            order(52..53,56..57,59,63,74,78..79,82,84..86,88..89,
                     91..92)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381480"
     CDS             1..2256
                     /gene="USF3"
                     /coded_by="XM_054060901.1:20..6790"
                     /db_xref="GeneID:104055823"
ORIGIN      
        1 mvpavgrppp epaalfsetm pemtenetps kkqhrkknre thnaverhrk kkinaginri
       61 gelipcspal kqsknmildq afkyitemkr qndelllngg nneqaeeikk lrkqldelqk
      121 engryiellk andiclyddp tihwkgnlkn akisvvipsd qvqknvivys ngsqpngnnq
      181 gasvqgitfn lghnlqkqta nvvpvqrtcs lvtpvtisgi yptenkpwsq ttvsplasaq
      241 aapagnvlel stseneqgvl iaatassqsv srsgteqelq csasnapqnd qnlpksknde
      301 estkltkktv lqgmnlpsrv steasqvqqv tatcsntdss rsdlqescvv sttdttcvps
      361 vrlstaegfs tvnvlkstdv lsstgmpvss aaegvkavma istlpasple ncwsfsgssg
      421 vgtsdlknms sltrmpsagn tqttwttlql agntvqplsq tpssimtall nepvngagtv
      481 ssahsrpltt sislnpslpg dgqaaeqivv tlpscpplpm qplisqpqvk tqaagnilpl
      541 nsamqviqma qpvasavtga psnqnviilq ppnpapcppi vradvpsqnv sqqiviiqaa
      601 sqnplpllsa qpsasvrvpv ngptaissss vqnaplqqtl ggkhlvhilp rpsslpssss
      661 tqtfsvtmsn qqhpqtisln gqlfalqpvm sssgasnqap mqiiqpttse dpntnvalnt
      721 fgalanlnqs isqmagqscl hlslshptnp tsvnnqiatv ncvslptsva ssvpvevsvl
      781 tsvsnsinas pkkvaaglps sakskrankk pttkkhqavn snvscptvpc kdagkvdctp
      841 vetvakhsns egllesapav sqaltasqvs gvsvssgisv snchsketas seqaaktcsv
      901 pepssaeapt ssplasvvse qlslipptak dsaprqqape sqnhpptssa lpeppkpcep
      961 pnsltssrte ahvthsqvag tsavkgsaag htskagmise pysvaqdssa viqdadlleg
     1021 qgltrmlsdl tkertavekn ssftiqrehi nfpmensksa epnvdlpekq elllmntegd
     1081 tlsqhhscvs dqevvsasli tsrqadspms tssgssrgfs vasmlpdttr edvtsststs
     1141 tcnscpfseq tdivalaara ifdqeslekg gggiqvnvrv ttsksteaap lkreqqafkp
     1201 qpvkennagp levgaskfsa qdavqtsvdr qvekpscpvg svetsnaslq vsasqspsit
     1261 slsvnnlihq srivhplvgc sslsqssepa svpatvslsl psstyinqsp gpammseyaq
     1321 eqlnairast mqapqlqesh lkqqnhegrk dsakravqdd lllstakrqk qcqttpirle
     1381 gmalmnrtpe siadqtqmlv sqippnssns vasvsnqgha dglnrlfpsn snfvtpalrq
     1441 nevqcapqps iseqqgqagq hlqpiqhvpa qgishlhsnh pylkqqqagq lrerhhlyql
     1501 qhhvthgens vhsqphsvhq qrtiqqevqm qkkrnliqgt qatqlslqkh hgsdqtrqkg
     1561 qphphhqqmq qqmqqhfgas qpekncenpa tsrnhhshpq shinqdimhq qqqdvtsrqq
     1621 gsasehvsgh nqmqrlmtsr gleqqmvsqa sivtrpsemt ctphrqernr vssysaeali
     1681 gktpsnseqr igislqgprv sdqlemrsyl dvsrnkglvi hnmqgrlsvd htvgsdvqrl
     1741 sdcqtfkpag pnqqpmgnfd vqasrnneig nsvsslrgmq sqafrigqnt gpsierqkrl
     1801 pyqpvqgipt gntlpsrene ntchqsfmqs llaphlgdqv sgsqrsipeh qrntqcgtss
     1861 tieyncppar esihirrdgd gqnrescdms igaintrnss lnipfsssss sgdiqgrnts
     1921 pnisvqksna mrmtdshgtk shmntpvssn mhgvvrpthp hpavshgnge qgqpsvrqpn
     1981 ssvtqrsrhp lqdnggskir qpernrsgnq rhgnvfdpsl phlplsaggs milgrqqsai
     2041 ekrgsivrfm pdgpqvsndn aapdqhtlsq nfgfpfipeg gmnppinant sfippvtqps
     2101 atrtpalipv dpqntlpsfy ppyspahptl sndisipyfp nqmfpnptte kpssgslnnr
     2161 fgsilspprp vgfaqpsfpl lpdmppmhmt ntshlsnfnl tslfpeiata lppdgsavsp
     2221 llsiantsas dsskqssnrp ahnishilgh dcssav
//
LOCUS       XP_053916877            2237 aa            linear   VRT 09-MAR-2023
DEFINITION  basic helix-loop-helix domain-containing protein USF3 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053916877
VERSION     XP_053916877.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060902.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2237
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2237
                     /product="basic helix-loop-helix domain-containing protein
                     USF3 isoform X2"
                     /calculated_mol_wt=239238
     Region          15..79
                     /region_name="bHLHzip_USF3"
                     /note="basic Helix-Loop-Helix-zipper (bHLHzip) domain
                     found in basic helix-loop-helix domain-containing protein
                     USF3 and similar proteins; cd18910"
                     /db_xref="CDD:381480"
     Site            order(23..24,26..27,30..31,35,54..55)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381480"
     Site            order(33..34,37..38,40,44,55,59..60,63,65..67,69..70,
                     72..73)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381480"
     CDS             1..2237
                     /gene="USF3"
                     /coded_by="XM_054060902.1:247..6960"
                     /db_xref="GeneID:104055823"
ORIGIN      
        1 mpemtenetp skkqhrkknr ethnaverhr kkkinaginr igelipcspa lkqsknmild
       61 qafkyitemk rqndelllng gnneqaeeik klrkqldelq kengryiell kandiclydd
      121 ptihwkgnlk nakisvvips dqvqknvivy sngsqpngnn qgasvqgitf nlghnlqkqt
      181 anvvpvqrtc slvtpvtisg iyptenkpws qttvsplasa qaapagnvle lstseneqgv
      241 liaatassqs vsrsgteqel qcsasnapqn dqnlpksknd eestkltkkt vlqgmnlpsr
      301 vsteasqvqq vtatcsntds srsdlqescv vsttdttcvp svrlstaegf stvnvlkstd
      361 vlsstgmpvs saaegvkavm aistlpaspl encwsfsgss gvgtsdlknm ssltrmpsag
      421 ntqttwttlq lagntvqpls qtpssimtal lnepvngagt vssahsrplt tsislnpslp
      481 gdgqaaeqiv vtlpscpplp mqplisqpqv ktqaagnilp lnsamqviqm aqpvasavtg
      541 apsnqnviil qppnpapcpp ivradvpsqn vsqqiviiqa asqnplplls aqpsasvrvp
      601 vngptaisss svqnaplqqt lggkhlvhil prpsslpsss stqtfsvtms nqqhpqtisl
      661 ngqlfalqpv msssgasnqa pmqiiqptts edpntnvaln tfgalanlnq sisqmagqsc
      721 lhlslshptn ptsvnnqiat vncvslptsv assvpvevsv ltsvsnsina spkkvaaglp
      781 ssakskrank kpttkkhqav nsnvscptvp ckdagkvdct pvetvakhsn segllesapa
      841 vsqaltasqv sgvsvssgis vsnchsketa sseqaaktcs vpepssaeap tssplasvvs
      901 eqlslippta kdsaprqqap esqnhpptss alpeppkpce ppnsltssrt eahvthsqva
      961 gtsavkgsaa ghtskagmis epysvaqdss aviqdadlle gqgltrmlsd ltkertavek
     1021 nssftiqreh infpmensks aepnvdlpek qelllmnteg dtlsqhhscv sdqevvsasl
     1081 itsrqadspm stssgssrgf svasmlpdtt redvtsstst stcnscpfse qtdivalaar
     1141 aifdqeslek ggggiqvnvr vttsksteaa plkreqqafk pqpvkennag plevgaskfs
     1201 aqdavqtsvd rqvekpscpv gsvetsnasl qvsasqspsi tslsvnnlih qsrivhplvg
     1261 csslsqssep asvpatvsls lpsstyinqs pgpammseya qeqlnairas tmqapqlqes
     1321 hlkqqnhegr kdsakravqd dlllstakrq kqcqttpirl egmalmnrtp esiadqtqml
     1381 vsqippnssn svasvsnqgh adglnrlfps nsnfvtpalr qnevqcapqp siseqqgqag
     1441 qhlqpiqhvp aqgishlhsn hpylkqqqag qlrerhhlyq lqhhvthgen svhsqphsvh
     1501 qqrtiqqevq mqkkrnliqg tqatqlslqk hhgsdqtrqk gqphphhqqm qqqmqqhfga
     1561 sqpekncenp atsrnhhshp qshinqdimh qqqqdvtsrq qgsasehvsg hnqmqrlmts
     1621 rgleqqmvsq asivtrpsem tctphrqern rvssysaeal igktpsnseq rigislqgpr
     1681 vsdqlemrsy ldvsrnkglv ihnmqgrlsv dhtvgsdvqr lsdcqtfkpa gpnqqpmgnf
     1741 dvqasrnnei gnsvsslrgm qsqafrigqn tgpsierqkr lpyqpvqgip tgntlpsren
     1801 entchqsfmq sllaphlgdq vsgsqrsipe hqrntqcgts stieyncppa resihirrdg
     1861 dgqnrescdm sigaintrns slnipfssss ssgdiqgrnt spnisvqksn amrmtdshgt
     1921 kshmntpvss nmhgvvrpth phpavshgng eqgqpsvrqp nssvtqrsrh plqdnggski
     1981 rqpernrsgn qrhgnvfdps lphlplsagg smilgrqqsa iekrgsivrf mpdgpqvsnd
     2041 naapdqhtls qnfgfpfipe ggmnppinan tsfippvtqp satrtpalip vdpqntlpsf
     2101 yppyspahpt lsndisipyf pnqmfpnptt ekpssgslnn rfgsilsppr pvgfaqpsfp
     2161 llpdmppmhm tntshlsnfn ltslfpeiat alppdgsavs pllsiantsa sdsskqssnr
     2221 pahnishilg hdcssav
//
LOCUS       XP_053916885            2237 aa            linear   VRT 09-MAR-2023
DEFINITION  basic helix-loop-helix domain-containing protein USF3 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053916885
VERSION     XP_053916885.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060910.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2237
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2237
                     /product="basic helix-loop-helix domain-containing protein
                     USF3 isoform X2"
                     /calculated_mol_wt=239238
     Region          15..79
                     /region_name="bHLHzip_USF3"
                     /note="basic Helix-Loop-Helix-zipper (bHLHzip) domain
                     found in basic helix-loop-helix domain-containing protein
                     USF3 and similar proteins; cd18910"
                     /db_xref="CDD:381480"
     Site            order(23..24,26..27,30..31,35,54..55)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381480"
     Site            order(33..34,37..38,40,44,55,59..60,63,65..67,69..70,
                     72..73)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381480"
     CDS             1..2237
                     /gene="USF3"
                     /coded_by="XM_054060910.1:1859..8572"
                     /db_xref="GeneID:104055823"
ORIGIN      
        1 mpemtenetp skkqhrkknr ethnaverhr kkkinaginr igelipcspa lkqsknmild
       61 qafkyitemk rqndelllng gnneqaeeik klrkqldelq kengryiell kandiclydd
      121 ptihwkgnlk nakisvvips dqvqknvivy sngsqpngnn qgasvqgitf nlghnlqkqt
      181 anvvpvqrtc slvtpvtisg iyptenkpws qttvsplasa qaapagnvle lstseneqgv
      241 liaatassqs vsrsgteqel qcsasnapqn dqnlpksknd eestkltkkt vlqgmnlpsr
      301 vsteasqvqq vtatcsntds srsdlqescv vsttdttcvp svrlstaegf stvnvlkstd
      361 vlsstgmpvs saaegvkavm aistlpaspl encwsfsgss gvgtsdlknm ssltrmpsag
      421 ntqttwttlq lagntvqpls qtpssimtal lnepvngagt vssahsrplt tsislnpslp
      481 gdgqaaeqiv vtlpscpplp mqplisqpqv ktqaagnilp lnsamqviqm aqpvasavtg
      541 apsnqnviil qppnpapcpp ivradvpsqn vsqqiviiqa asqnplplls aqpsasvrvp
      601 vngptaisss svqnaplqqt lggkhlvhil prpsslpsss stqtfsvtms nqqhpqtisl
      661 ngqlfalqpv msssgasnqa pmqiiqptts edpntnvaln tfgalanlnq sisqmagqsc
      721 lhlslshptn ptsvnnqiat vncvslptsv assvpvevsv ltsvsnsina spkkvaaglp
      781 ssakskrank kpttkkhqav nsnvscptvp ckdagkvdct pvetvakhsn segllesapa
      841 vsqaltasqv sgvsvssgis vsnchsketa sseqaaktcs vpepssaeap tssplasvvs
      901 eqlslippta kdsaprqqap esqnhpptss alpeppkpce ppnsltssrt eahvthsqva
      961 gtsavkgsaa ghtskagmis epysvaqdss aviqdadlle gqgltrmlsd ltkertavek
     1021 nssftiqreh infpmensks aepnvdlpek qelllmnteg dtlsqhhscv sdqevvsasl
     1081 itsrqadspm stssgssrgf svasmlpdtt redvtsstst stcnscpfse qtdivalaar
     1141 aifdqeslek ggggiqvnvr vttsksteaa plkreqqafk pqpvkennag plevgaskfs
     1201 aqdavqtsvd rqvekpscpv gsvetsnasl qvsasqspsi tslsvnnlih qsrivhplvg
     1261 csslsqssep asvpatvsls lpsstyinqs pgpammseya qeqlnairas tmqapqlqes
     1321 hlkqqnhegr kdsakravqd dlllstakrq kqcqttpirl egmalmnrtp esiadqtqml
     1381 vsqippnssn svasvsnqgh adglnrlfps nsnfvtpalr qnevqcapqp siseqqgqag
     1441 qhlqpiqhvp aqgishlhsn hpylkqqqag qlrerhhlyq lqhhvthgen svhsqphsvh
     1501 qqrtiqqevq mqkkrnliqg tqatqlslqk hhgsdqtrqk gqphphhqqm qqqmqqhfga
     1561 sqpekncenp atsrnhhshp qshinqdimh qqqqdvtsrq qgsasehvsg hnqmqrlmts
     1621 rgleqqmvsq asivtrpsem tctphrqern rvssysaeal igktpsnseq rigislqgpr
     1681 vsdqlemrsy ldvsrnkglv ihnmqgrlsv dhtvgsdvqr lsdcqtfkpa gpnqqpmgnf
     1741 dvqasrnnei gnsvsslrgm qsqafrigqn tgpsierqkr lpyqpvqgip tgntlpsren
     1801 entchqsfmq sllaphlgdq vsgsqrsipe hqrntqcgts stieyncppa resihirrdg
     1861 dgqnrescdm sigaintrns slnipfssss ssgdiqgrnt spnisvqksn amrmtdshgt
     1921 kshmntpvss nmhgvvrpth phpavshgng eqgqpsvrqp nssvtqrsrh plqdnggski
     1981 rqpernrsgn qrhgnvfdps lphlplsagg smilgrqqsa iekrgsivrf mpdgpqvsnd
     2041 naapdqhtls qnfgfpfipe ggmnppinan tsfippvtqp satrtpalip vdpqntlpsf
     2101 yppyspahpt lsndisipyf pnqmfpnptt ekpssgslnn rfgsilsppr pvgfaqpsfp
     2161 llpdmppmhm tntshlsnfn ltslfpeiat alppdgsavs pllsiantsa sdsskqssnr
     2221 pahnishilg hdcssav
//
LOCUS       XP_053916897             824 aa            linear   VRT 09-MAR-2023
DEFINITION  SID1 transmembrane family member 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053916897
VERSION     XP_053916897.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060922.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..824
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..824
                     /product="SID1 transmembrane family member 1 isoform X1"
                     /calculated_mol_wt=92603
     Region          173..824
                     /region_name="SID-1_RNA_chan"
                     /note="dsRNA-gated channel SID-1; pfam13965"
                     /db_xref="CDD:464057"
     CDS             1..824
                     /gene="SIDT1"
                     /coded_by="XM_054060922.1:129..2603"
                     /db_xref="GeneID:104055873"
ORIGIN      
        1 magaaaqrra pgallcallc aaaagvqpag tpetgafgrv yrgavsisae rvyafayrsq
       61 pgqvdavrvy vnsssenlqy pvlfvvrqqk gvlswqvpli frglyqrtyn yqevsrtlcp
      121 septpeagps dqiifvdvas mapfniayel lvtrlenfql etnkafnfta spsqpqyfly
      181 kfpqdvdsvi ikvvsdaayp csvvsvqdiv cpvydldhnv efngvyqsmt kqaaitvqrk
      241 dfpgeqffvv fvikpedyac ggtvpssihg nvnrtwnlqr tknlqvmiep sikksvyvqa
      301 mffsflsfls fylgsvvvaf vhyirvrrka sagrlspddg sgimtsshpi tastpegssy
      361 gaidesssig grqlssperg lppgsdtdss veedsdfdtm peiesdknvi rtkvflylsd
      421 lsrkdrrivs kkykiyfwni itiavfyalp viqlvityqt vvnvtgnqdi cyynflcahp
      481 lgvlsafnnv lsnvghlllg flfllivlrr nilhrramer kdvytldygi pkhfglfyam
      541 gialmmegvl sacyhvcpny snfqfdtsfm ymiaglcmlk lyqtrhpdin asaysayasf
      601 avviclavlg vvfgkndmwf wvifsmihvl aslalstqiy ymgrfkidgp dsdlgifrra
      661 amvlytdciq qcsrplymdr mvllivgnlv nwsfaifglv yrprdfasyi lgificnlll
      721 ylafyiimkl rsaekllpip lfcimatavv waaalyfffq nlssweetpa esreknrpci
      781 llgffddhdv whflsaaalf fsflvlltld ddldmvrrdk ipvf
//
LOCUS       XP_053916903             819 aa            linear   VRT 09-MAR-2023
DEFINITION  SID1 transmembrane family member 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053916903
VERSION     XP_053916903.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060928.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..819
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..819
                     /product="SID1 transmembrane family member 1 isoform X2"
                     /calculated_mol_wt=92131
     Region          173..819
                     /region_name="SID-1_RNA_chan"
                     /note="dsRNA-gated channel SID-1; pfam13965"
                     /db_xref="CDD:464057"
     CDS             1..819
                     /gene="SIDT1"
                     /coded_by="XM_054060928.1:129..2588"
                     /db_xref="GeneID:104055873"
ORIGIN      
        1 magaaaqrra pgallcallc aaaagvqpag tpetgafgrv yrgavsisae rvyafayrsq
       61 pgqvdavrvy vnsssenlqy pvlfvvrqqk gvlswqvpli frglyqrtyn yqevsrtlcp
      121 septpeagps dqiifvdvas mapfniayel lvtrlenfql etnkafnfta spsqpqyfly
      181 kfpqdvdsvi ikvvsdaayp csvvsvqdiv cpvydldhnv efngvyqsmt kqaaitvqrk
      241 dfpgeqffvv fvikpedyac ggtvpssihg nvnrtwnlqr tknlqvmiep sikksvyvqa
      301 mffsflsfls fylgsvvvaf vhyirvrrka sagrlspddg sgimtsshpi tastpegssy
      361 gaidesssig grqlssperg lppgsdtdss veedsdfdtm peiesdknvi rtkvflylsd
      421 lsrkdrrivs kkykiyfwni itiavfyalp viqlvityqt vvnvtgnqdi cyynflcahp
      481 lgvlsafnnv lsnvghlllg flfllivlrr nilhrramer kdvytldygi pkhfglfyam
      541 gialmmegvl sacyhvcpny snfqfdtsfm ymiaglcmlk lyqtrhpdin asaysayasf
      601 avviclavlg vvfgkndmwf wvifsmihvl aslalstqiy ymgrfkidlg ifrraamvly
      661 tdciqqcsrp lymdrmvlli vgnlvnwsfa ifglvyrprd fasyilgifi cnlllylafy
      721 iimklrsaek llpiplfcim atavvwaaal yfffqnlssw eetpaesrek nrpcillgff
      781 ddhdvwhfls aaalffsflv lltldddldm vrrdkipvf
//
LOCUS       XP_053916909             664 aa            linear   VRT 09-MAR-2023
DEFINITION  SID1 transmembrane family member 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053916909
VERSION     XP_053916909.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060934.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..664
                     /product="SID1 transmembrane family member 1 isoform X3"
                     /calculated_mol_wt=75200
     Region          13..664
                     /region_name="SID-1_RNA_chan"
                     /note="dsRNA-gated channel SID-1; pfam13965"
                     /db_xref="CDD:464057"
     CDS             1..664
                     /gene="SIDT1"
                     /coded_by="XM_054060934.1:96..2090"
                     /db_xref="GeneID:104055873"
ORIGIN      
        1 mtnkafnfta spsqpqyfly kfpqdvdsvi ikvvsdaayp csvvsvqdiv cpvydldhnv
       61 efngvyqsmt kqaaitvqrk dfpgeqffvv fvikpedyac ggtvpssihg nvnrtwnlqr
      121 tknlqvmiep sikksvyvqa mffsflsfls fylgsvvvaf vhyirvrrka sagrlspddg
      181 sgimtsshpi tastpegssy gaidesssig grqlssperg lppgsdtdss veedsdfdtm
      241 peiesdknvi rtkvflylsd lsrkdrrivs kkykiyfwni itiavfyalp viqlvityqt
      301 vvnvtgnqdi cyynflcahp lgvlsafnnv lsnvghlllg flfllivlrr nilhrramer
      361 kdvytldygi pkhfglfyam gialmmegvl sacyhvcpny snfqfdtsfm ymiaglcmlk
      421 lyqtrhpdin asaysayasf avviclavlg vvfgkndmwf wvifsmihvl aslalstqiy
      481 ymgrfkidgp dsdlgifrra amvlytdciq qcsrplymdr mvllivgnlv nwsfaifglv
      541 yrprdfasyi lgificnlll ylafyiimkl rsaekllpip lfcimatavv waaalyfffq
      601 nlssweetpa esreknrpci llgffddhdv whflsaaalf fsflvlltld ddldmvrrdk
      661 ipvf
//
LOCUS       XP_053916925             617 aa            linear   VRT 09-MAR-2023
DEFINITION  V-type proton ATPase catalytic subunit A [Cuculus canorus].
ACCESSION   XP_053916925
VERSION     XP_053916925.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060950.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..617
                     /product="V-type proton ATPase catalytic subunit A"
                     /calculated_mol_wt=68152
     Region          19..609
                     /region_name="V-ATPase_V1_A"
                     /note="V-type (H+)-ATPase V1, A subunit; TIGR01042"
                     /db_xref="CDD:273411"
     CDS             1..617
                     /gene="ATP6V1A"
                     /coded_by="XM_054060950.1:118..1971"
                     /db_xref="GeneID:104055826"
ORIGIN      
        1 mdfsklpkir dedreafvgy vhgvsgpvvt acnmagaamy elvrvghsel vgeiirlegd
       61 latvqvyeet sgvsvgdpvl rtgkplsvel gpgimgaifd giqrplsdis altksiyipr
      121 gvnvsalsrd vkwdftpskn lrvgshitgg diygvvnens likhkimlpp rnrgtvtyia
      181 ppgnydasdv vlelefegvk ekftmvqvwp vrqvrpvtek lpanhplltg qrvldalfpc
      241 vqggttaipg afgcgktvis qslskysnsd viiyvgcger gnemsevlrd fpeltmevdg
      301 kvesimkrta lvantsnmpv aareasiytg itlseyfrdm gyhvsmmads tsrwaealre
      361 isgrlaempa dsgypaylga rlasfyerag rvkclgnper egsvsivgav sppggdfsdp
      421 vtsatlgivq vfwgldkkla qrkhfpsvnw lisyskytra ldeyydkhft efvplrtkak
      481 eilqeeedla eivqlvgkas laetdkitle vaklikddfl qqngytpydr fcpfyktvgm
      541 lsnmiafydm arravettaq sdnkitwsii renmseilyr ltsmkfkdpv kdgeakikad
      601 yaqlfedmqn afrsled
//
LOCUS       XP_009555306             617 aa            linear   VRT 09-MAR-2023
DEFINITION  V-type proton ATPase catalytic subunit A [Cuculus canorus].
ACCESSION   XP_009555306
VERSION     XP_009555306.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557011.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..617
                     /product="V-type proton ATPase catalytic subunit A"
                     /calculated_mol_wt=68152
     Region          19..609
                     /region_name="V-ATPase_V1_A"
                     /note="V-type (H+)-ATPase V1, A subunit; TIGR01042"
                     /db_xref="CDD:273411"
     CDS             1..617
                     /gene="ATP6V1A"
                     /coded_by="XM_009557011.2:204..2057"
                     /db_xref="GeneID:104055826"
ORIGIN      
        1 mdfsklpkir dedreafvgy vhgvsgpvvt acnmagaamy elvrvghsel vgeiirlegd
       61 latvqvyeet sgvsvgdpvl rtgkplsvel gpgimgaifd giqrplsdis altksiyipr
      121 gvnvsalsrd vkwdftpskn lrvgshitgg diygvvnens likhkimlpp rnrgtvtyia
      181 ppgnydasdv vlelefegvk ekftmvqvwp vrqvrpvtek lpanhplltg qrvldalfpc
      241 vqggttaipg afgcgktvis qslskysnsd viiyvgcger gnemsevlrd fpeltmevdg
      301 kvesimkrta lvantsnmpv aareasiytg itlseyfrdm gyhvsmmads tsrwaealre
      361 isgrlaempa dsgypaylga rlasfyerag rvkclgnper egsvsivgav sppggdfsdp
      421 vtsatlgivq vfwgldkkla qrkhfpsvnw lisyskytra ldeyydkhft efvplrtkak
      481 eilqeeedla eivqlvgkas laetdkitle vaklikddfl qqngytpydr fcpfyktvgm
      541 lsnmiafydm arravettaq sdnkitwsii renmseilyr ltsmkfkdpv kdgeakikad
      601 yaqlfedmqn afrsled
//
LOCUS       XP_053916944             617 aa            linear   VRT 09-MAR-2023
DEFINITION  V-type proton ATPase catalytic subunit A [Cuculus canorus].
ACCESSION   XP_053916944
VERSION     XP_053916944.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060969.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..617
                     /product="V-type proton ATPase catalytic subunit A"
                     /calculated_mol_wt=68152
     Region          19..609
                     /region_name="V-ATPase_V1_A"
                     /note="V-type (H+)-ATPase V1, A subunit; TIGR01042"
                     /db_xref="CDD:273411"
     CDS             1..617
                     /gene="ATP6V1A"
                     /coded_by="XM_054060969.1:132..1985"
                     /db_xref="GeneID:104055826"
ORIGIN      
        1 mdfsklpkir dedreafvgy vhgvsgpvvt acnmagaamy elvrvghsel vgeiirlegd
       61 latvqvyeet sgvsvgdpvl rtgkplsvel gpgimgaifd giqrplsdis altksiyipr
      121 gvnvsalsrd vkwdftpskn lrvgshitgg diygvvnens likhkimlpp rnrgtvtyia
      181 ppgnydasdv vlelefegvk ekftmvqvwp vrqvrpvtek lpanhplltg qrvldalfpc
      241 vqggttaipg afgcgktvis qslskysnsd viiyvgcger gnemsevlrd fpeltmevdg
      301 kvesimkrta lvantsnmpv aareasiytg itlseyfrdm gyhvsmmads tsrwaealre
      361 isgrlaempa dsgypaylga rlasfyerag rvkclgnper egsvsivgav sppggdfsdp
      421 vtsatlgivq vfwgldkkla qrkhfpsvnw lisyskytra ldeyydkhft efvplrtkak
      481 eilqeeedla eivqlvgkas laetdkitle vaklikddfl qqngytpydr fcpfyktvgm
      541 lsnmiafydm arravettaq sdnkitwsii renmseilyr ltsmkfkdpv kdgeakikad
      601 yaqlfedmqn afrsled
//
LOCUS       XP_053916955             617 aa            linear   VRT 09-MAR-2023
DEFINITION  V-type proton ATPase catalytic subunit A [Cuculus canorus].
ACCESSION   XP_053916955
VERSION     XP_053916955.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060980.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..617
                     /product="V-type proton ATPase catalytic subunit A"
                     /calculated_mol_wt=68152
     Region          19..609
                     /region_name="V-ATPase_V1_A"
                     /note="V-type (H+)-ATPase V1, A subunit; TIGR01042"
                     /db_xref="CDD:273411"
     CDS             1..617
                     /gene="ATP6V1A"
                     /coded_by="XM_054060980.1:40..1893"
                     /db_xref="GeneID:104055826"
ORIGIN      
        1 mdfsklpkir dedreafvgy vhgvsgpvvt acnmagaamy elvrvghsel vgeiirlegd
       61 latvqvyeet sgvsvgdpvl rtgkplsvel gpgimgaifd giqrplsdis altksiyipr
      121 gvnvsalsrd vkwdftpskn lrvgshitgg diygvvnens likhkimlpp rnrgtvtyia
      181 ppgnydasdv vlelefegvk ekftmvqvwp vrqvrpvtek lpanhplltg qrvldalfpc
      241 vqggttaipg afgcgktvis qslskysnsd viiyvgcger gnemsevlrd fpeltmevdg
      301 kvesimkrta lvantsnmpv aareasiytg itlseyfrdm gyhvsmmads tsrwaealre
      361 isgrlaempa dsgypaylga rlasfyerag rvkclgnper egsvsivgav sppggdfsdp
      421 vtsatlgivq vfwgldkkla qrkhfpsvnw lisyskytra ldeyydkhft efvplrtkak
      481 eilqeeedla eivqlvgkas laetdkitle vaklikddfl qqngytpydr fcpfyktvgm
      541 lsnmiafydm arravettaq sdnkitwsii renmseilyr ltsmkfkdpv kdgeakikad
      601 yaqlfedmqn afrsled
//
LOCUS       XP_053916971             320 aa            linear   VRT 09-MAR-2023
DEFINITION  dual specificity protein phosphatase 12 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053916971
VERSION     XP_053916971.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054060996.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..320
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..320
                     /product="dual specificity protein phosphatase 12 isoform
                     X1"
                     /calculated_mol_wt=34181
     Region          10..153
                     /region_name="PTP_DSP_cys"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; cl28904"
                     /db_xref="CDD:475123"
     CDS             1..320
                     /gene="DUSP12"
                     /coded_by="XM_054060996.1:48..1010"
                     /db_xref="GeneID:104055874"
ORIGIN      
        1 msvpgggsap vsvwpgllvg gaescqsaea lravgvsavl tvgaeaeaaa avpglrclhv
       61 qardepradl lsrldecaaf isaargvgga vlvrchagvs rsvavvtayl mkteglswee
      121 ayaavraakp dsevnpgfqa qlklyeamgc tvdmssplyk ryrlellteh yselqdlpre
      181 vfaadptstc qtpdtevlyr crkcrralfr sssilshmeg sgpaafahkr itgsaqlrgg
      241 gremctsyft epvqwmepal lgvlegqllc pkctsklgsf swrgeqcscg rwvtpafqih
      301 ksrvdevrtl pvgniqaakt
//
LOCUS       XP_053916982             282 aa            linear   VRT 09-MAR-2023
DEFINITION  dual specificity protein phosphatase 12 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053916982
VERSION     XP_053916982.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061007.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..282
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..282
                     /product="dual specificity protein phosphatase 12 isoform
                     X2"
                     /calculated_mol_wt=30231
     Region          10..115
                     /region_name="PTP_DSP_cys"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; cl28904"
                     /db_xref="CDD:475123"
     CDS             1..282
                     /gene="DUSP12"
                     /coded_by="XM_054061007.1:50..898"
                     /db_xref="GeneID:104055874"
ORIGIN      
        1 msvpgggsap vsvwpgllvg gaescqsaea lravgvsavl tvgaeaeaaa avpglrclhv
       61 qardepradl lsrldecaaf isaargvgga vlvrwvnpgf qaqlklyeam gctvdmsspl
      121 ykryrlellt ehyselqdlp revfaadpts tcqtpdtevl yrcrkcrral frsssilshm
      181 egsgpaafah kritgsaqlr gggremctsy ftepvqwmep allgvlegql lcpkctsklg
      241 sfswrgeqcs cgrwvtpafq ihksrvdevr tlpvgniqaa kt
//
LOCUS       XP_009555305             179 aa            linear   VRT 09-MAR-2023
DEFINITION  N-alpha-acetyltransferase 50 isoform X1 [Cuculus canorus].
ACCESSION   XP_009555305
VERSION     XP_009555305.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557010.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..179
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..179
                     /product="N-alpha-acetyltransferase 50 isoform X1"
                     /calculated_mol_wt=20363
     Region          66..164
                     /region_name="RimI"
                     /note="Ribosomal protein S18 acetylase RimI and related
                     acetyltransferases [Translation, ribosomal structure and
                     biogenesis]; COG0456"
                     /db_xref="CDD:440224"
     CDS             1..179
                     /gene="NAA50"
                     /coded_by="XM_009557010.2:16..555"
                     /db_xref="GeneID:104055824"
ORIGIN      
        1 mpdvkhvlic sssrielgdv tphnikqlkr lnqvifpvsy ndkfykdvle vgelaklayf
       61 ndiavgavcc rvdhsqnqkr lyimtlgcla pyrrlgigtk mlnhvlnice kdgtfdniyl
      121 hvqisnesai dfyrkfgfei ietkknyykr iepadahvlq knlkapclgq nadvqktdn
//
LOCUS       XP_053917005             170 aa            linear   VRT 09-MAR-2023
DEFINITION  N-alpha-acetyltransferase 50 isoform X2 [Cuculus canorus].
ACCESSION   XP_053917005
VERSION     XP_053917005.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061030.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..170
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..170
                     /product="N-alpha-acetyltransferase 50 isoform X2"
                     /calculated_mol_wt=19368
     Region          57..155
                     /region_name="RimI"
                     /note="Ribosomal protein S18 acetylase RimI and related
                     acetyltransferases [Translation, ribosomal structure and
                     biogenesis]; COG0456"
                     /db_xref="CDD:440224"
     CDS             1..170
                     /gene="NAA50"
                     /coded_by="XM_054061030.1:191..703"
                     /db_xref="GeneID:104055824"
ORIGIN      
        1 mkgsrielgd vtphnikqlk rlnqvifpvs yndkfykdvl evgelaklay fndiavgavc
       61 crvdhsqnqk rlyimtlgcl apyrrlgigt kmlnhvlnic ekdgtfdniy lhvqisnesa
      121 idfyrkfgfe iietkknyyk riepadahvl qknlkapclg qnadvqktdn
//
LOCUS       XP_053917016             169 aa            linear   VRT 09-MAR-2023
DEFINITION  N-alpha-acetyltransferase 50 isoform X3 [Cuculus canorus].
ACCESSION   XP_053917016
VERSION     XP_053917016.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061041.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..169
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..169
                     /product="N-alpha-acetyltransferase 50 isoform X3"
                     /calculated_mol_wt=19281
     Region          56..154
                     /region_name="RimI"
                     /note="Ribosomal protein S18 acetylase RimI and related
                     acetyltransferases [Translation, ribosomal structure and
                     biogenesis]; COG0456"
                     /db_xref="CDD:440224"
     CDS             1..169
                     /gene="NAA50"
                     /coded_by="XM_054061041.1:192..701"
                     /db_xref="GeneID:104055824"
ORIGIN      
        1 mkgrielgdv tphnikqlkr lnqvifpvsy ndkfykdvle vgelaklayf ndiavgavcc
       61 rvdhsqnqkr lyimtlgcla pyrrlgigtk mlnhvlnice kdgtfdniyl hvqisnesai
      121 dfyrkfgfei ietkknyykr iepadahvlq knlkapclgq nadvqktdn
//
LOCUS       XP_053917031             610 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053917031
VERSION     XP_053917031.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061056.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..610
                     /product="ATP-dependent (S)-NAD(P)H-hydrate dehydratase
                     isoform X1"
                     /calculated_mol_wt=67756
     Region          10..93
                     /region_name="Myb_DNA-bind_4"
                     /note="Myb/SANT-like DNA-binding domain; pfam13837"
                     /db_xref="CDD:463994"
     Region          332..599
                     /region_name="YXKO-related"
                     /note="B.subtilis YXKO protein of unknown function and
                     related proteins. Based on the conservation of the ATP
                     binding site, the substrate binding site and the
                     Mg2+binding site and structural homology this group is a
                     member of the ribokinase-like superfamily; cd01171"
                     /db_xref="CDD:238576"
     Site            order(354,535,538)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:238576"
     Site            order(469,509,536..537,540,577)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:238576"
     CDS             1..610
                     /gene="NAXD"
                     /coded_by="XM_054061056.1:177..2009"
                     /db_xref="GeneID:104068397"
ORIGIN      
        1 mitntrgflw sdletralle iwgeadvqsa ldgnfrnshv yrdvacrlae lgfertpeqc
       61 ririkglkrq yyqardglkk ngharkicky ydemdrilsc rggpegaphp ealppqpppg
      121 tprgadpdld edaelesprh nfaedsgecs syaehpvkve cppfaipvpp gdgfkeinap
      181 tinpplsqpk rskkrhanlt wdkmmekflq qsvdteekfy ryeeqrlkie dkrreaehar
      241 elqmlqmlgq mlagisstvs qrsqtipasp pqranhrsyg dnfnynamta alsppivier
      301 sfslhrthsl kdmenifqlv rnvippltgk rhkgqdgrig ivggcreytg apyfaaital
      361 kvgadlshvf ctkdaatvik syspelivhp vldspnavhe vekwlprlhs vvigpglgrd
      421 evllenakgi iekskvkgip iiidadglwl isqqpsliqg yqrailtpny mefsrlyeam
      481 lrdpvdssdh hgcvlrlsqa mgnltivqkg erdlisdgek vlvcshegss rrcggqgdll
      541 sgslgvlahw aflagaektn gqnpflvaaf gacsltrqsn hqafqkfgrs mtasdmvsev
      601 gtafnklfet
//
LOCUS       XP_053917039             610 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053917039
VERSION     XP_053917039.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061064.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..610
                     /product="ATP-dependent (S)-NAD(P)H-hydrate dehydratase
                     isoform X1"
                     /calculated_mol_wt=67756
     Region          10..93
                     /region_name="Myb_DNA-bind_4"
                     /note="Myb/SANT-like DNA-binding domain; pfam13837"
                     /db_xref="CDD:463994"
     Region          332..599
                     /region_name="YXKO-related"
                     /note="B.subtilis YXKO protein of unknown function and
                     related proteins. Based on the conservation of the ATP
                     binding site, the substrate binding site and the
                     Mg2+binding site and structural homology this group is a
                     member of the ribokinase-like superfamily; cd01171"
                     /db_xref="CDD:238576"
     Site            order(354,535,538)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:238576"
     Site            order(469,509,536..537,540,577)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:238576"
     CDS             1..610
                     /gene="NAXD"
                     /coded_by="XM_054061064.1:151..1983"
                     /db_xref="GeneID:104068397"
ORIGIN      
        1 mitntrgflw sdletralle iwgeadvqsa ldgnfrnshv yrdvacrlae lgfertpeqc
       61 ririkglkrq yyqardglkk ngharkicky ydemdrilsc rggpegaphp ealppqpppg
      121 tprgadpdld edaelesprh nfaedsgecs syaehpvkve cppfaipvpp gdgfkeinap
      181 tinpplsqpk rskkrhanlt wdkmmekflq qsvdteekfy ryeeqrlkie dkrreaehar
      241 elqmlqmlgq mlagisstvs qrsqtipasp pqranhrsyg dnfnynamta alsppivier
      301 sfslhrthsl kdmenifqlv rnvippltgk rhkgqdgrig ivggcreytg apyfaaital
      361 kvgadlshvf ctkdaatvik syspelivhp vldspnavhe vekwlprlhs vvigpglgrd
      421 evllenakgi iekskvkgip iiidadglwl isqqpsliqg yqrailtpny mefsrlyeam
      481 lrdpvdssdh hgcvlrlsqa mgnltivqkg erdlisdgek vlvcshegss rrcggqgdll
      541 sgslgvlahw aflagaektn gqnpflvaaf gacsltrqsn hqafqkfgrs mtasdmvsev
      601 gtafnklfet
//
LOCUS       XP_053917047             339 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053917047
VERSION     XP_053917047.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061072.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..339
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..339
                     /product="ATP-dependent (S)-NAD(P)H-hydrate dehydratase
                     isoform X2"
                     /calculated_mol_wt=36623
     Region          61..328
                     /region_name="YXKO-related"
                     /note="B.subtilis YXKO protein of unknown function and
                     related proteins. Based on the conservation of the ATP
                     binding site, the substrate binding site and the
                     Mg2+binding site and structural homology this group is a
                     member of the ribokinase-like superfamily; cd01171"
                     /db_xref="CDD:238576"
     Site            order(83,264,267)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:238576"
     Site            order(198,238,265..266,269,306)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:238576"
     CDS             1..339
                     /gene="NAXD"
                     /coded_by="XM_054061072.1:64..1083"
                     /db_xref="GeneID:104068397"
ORIGIN      
        1 mwgrgalaag alaalclalw lrgdgviers fslhrthslk dmenifqlvr nvippltgkr
       61 hkgqdgrigi vggcreytga pyfaaitalk vgadlshvfc tkdaatviks yspelivhpv
      121 ldspnavhev ekwlprlhsv vigpglgrde vllenakgii ekskvkgipi iidadglwli
      181 sqqpsliqgy qrailtpnym efsrlyeaml rdpvdssdhh gcvlrlsqam gnltivqkge
      241 rdlisdgekv lvcshegssr rcggqgdlls gslgvlahwa flagaektng qnpflvaafg
      301 acsltrqsnh qafqkfgrsm tasdmvsevg tafnklfet
//
LOCUS       XP_009569564             336 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X3 [Cuculus
            canorus].
ACCESSION   XP_009569564
VERSION     XP_009569564.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009571269.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009569564.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..336
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..336
                     /product="ATP-dependent (S)-NAD(P)H-hydrate dehydratase
                     isoform X3"
                     /calculated_mol_wt=36407
     Region          58..325
                     /region_name="YXKO-related"
                     /note="B.subtilis YXKO protein of unknown function and
                     related proteins. Based on the conservation of the ATP
                     binding site, the substrate binding site and the
                     Mg2+binding site and structural homology this group is a
                     member of the ribokinase-like superfamily; cd01171"
                     /db_xref="CDD:238576"
     Site            order(80,261,264)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:238576"
     Site            order(195,235,262..263,266,303)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:238576"
     CDS             1..336
                     /gene="NAXD"
                     /coded_by="XM_009571269.2:117..1127"
                     /db_xref="GeneID:104068397"
ORIGIN      
        1 mrcarrlpal laggagstal rrviersfsl hrthslkdme nifqlvrnvi ppltgkrhkg
       61 qdgrigivgg creytgapyf aaitalkvga dlshvfctkd aatviksysp elivhpvlds
      121 pnavhevekw lprlhsvvig pglgrdevll enakgiieks kvkgipiiid adglwlisqq
      181 psliqgyqra iltpnymefs rlyeamlrdp vdssdhhgcv lrlsqamgnl tivqkgerdl
      241 isdgekvlvc shegssrrcg gqgdllsgsl gvlahwafla gaektngqnp flvaafgacs
      301 ltrqsnhqaf qkfgrsmtas dmvsevgtaf nklfet
//
LOCUS       XP_053917069             442 aa            linear   VRT 09-MAR-2023
DEFINITION  polycomb protein EED [Cuculus canorus].
ACCESSION   XP_053917069
VERSION     XP_053917069.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061094.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..442
                     /product="polycomb protein EED"
                     /calculated_mol_wt=49975
     Region          97..141
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <110..440
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          149..189
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          194..231
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          241..303
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          310..358
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          366..406
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          414..438
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..442
                     /gene="EED"
                     /coded_by="XM_054061094.1:7..1335"
                     /db_xref="GeneID:104068405"
ORIGIN      
        1 msergdapaa avgaempakk qklssdensn pgdlsgdend davsiesgtn terpdtptnt
       61 pnapgrkswg kgkwkskkck ysfkcvnslk edhgqplfgv qfnwhskegd plvfatvgsn
      121 rvtlyechsq geirllqsyv dadadenfyt cawtydsnts hpllavagsr giiriinpit
      181 mqcikhyvgh gnainelkfh prdpnlllsv skdhalrlwn iqtdtlvaif ggveghrdev
      241 lsadydllge kimscgmdhs lklwrinskr minaikesye ynpnktnrpf vsqkihfpdf
      301 strdihrnyv dcvrwlgdli lskscenaiv cwkpgkmedd idkikpsesn vtilgrfdys
      361 qcdiwymrfs mdfwqkmlal gnqvgklyvw dleiedphka kcttlthpkc vaairqtsfs
      421 rdssiliavc ddasiwrwdr lr
//
LOCUS       XP_053917084             565 aa            linear   VRT 09-MAR-2023
DEFINITION  probable cysteine--tRNA ligase, mitochondrial isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053917084
VERSION     XP_053917084.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061109.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..565
                     /product="probable cysteine--tRNA ligase, mitochondrial
                     isoform X1"
                     /calculated_mol_wt=63483
     Region          24..563
                     /region_name="PTZ00399"
                     /note="cysteinyl-tRNA-synthetase; Provisional"
                     /db_xref="CDD:240402"
     CDS             1..565
                     /gene="CARS2"
                     /coded_by="XM_054061109.1:38..1735"
                     /db_xref="GeneID:104068406"
ORIGIN      
        1 mlrlaargcg rgkaaargcg tgarrweppa gwdsgiaahn srsrrkeplv lgtervatwy
       61 scgptvydqa hlghacsyvr fdiirrimtr ffgikvimvm gitdiddkii kranemnisp
      121 valarvyeed fkqdmaalkv lpptvymrvt enipqiisfi kkiianghay atlqgnvyfd
      181 vkswgkrygv lttidpntqd eavdtdkrhs kdfalwkaak pqeiswtspw gkgrpgwhie
      241 cstissavfg kqldihtggi dlafphhene iaqcevyhqc eqwgnyflhs ghlhvkgsqe
      301 kmskslknyi tikdflkkss sdqfrmfclr sryssvefsd esmddaknll qavssftrda
      361 nayikgqlic dpvredilwe rlantkvtvk aafrddfdts ravaaimdli hhgnrqlkav
      421 tkdtgsprss vvygsiisyi edffnalgms fgerqvalgg dhsallsnvv delvrfrtkv
      481 rhyalalpea aeampvegdv raegqkeqke krrqlmrerk plleacdslr edlaafgvhi
      541 qdraavstwe iveggqteqq aekks
//
LOCUS       XP_053917089             513 aa            linear   VRT 09-MAR-2023
DEFINITION  probable cysteine--tRNA ligase, mitochondrial isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053917089
VERSION     XP_053917089.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061114.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..513
                     /product="probable cysteine--tRNA ligase, mitochondrial
                     isoform X2"
                     /calculated_mol_wt=57789
     Region          7..511
                     /region_name="PTZ00399"
                     /note="cysteinyl-tRNA-synthetase; Provisional"
                     /db_xref="CDD:240402"
     CDS             1..513
                     /gene="CARS2"
                     /coded_by="XM_054061114.1:103..1644"
                     /db_xref="GeneID:104068406"
ORIGIN      
        1 mkgcagyscg ptvydqahlg hacsyvrfdi irrimtrffg ikvimvmgit diddkiikra
       61 nemnispval arvyeedfkq dmaalkvlpp tvymrvteni pqiisfikki ianghayatl
      121 qgnvyfdvks wgkrygvltt idpntqdeav dtdkrhskdf alwkaakpqe iswtspwgkg
      181 rpgwhiecst issavfgkql dihtggidla fphheneiaq cevyhqceqw gnyflhsghl
      241 hvkgsqekms kslknyitik dflkksssdq frmfclrsry ssavefsdes mddaknllqa
      301 vssftrdana yikgqlicdp vredilwerl antkvtvkaa frddfdtsra vaaimdlihh
      361 gnrqlkavtk dtgsprssvv ygsiisyied ffnalgmsfg erqvalggdh sallsnvvde
      421 lvrfrtkvrh yalalpeaae ampvegdvra egqkeqkekr rqlmrerkpl leacdslred
      481 laafgvhiqd raavstweiv eggqteqqae kks
//
LOCUS       XP_053917099             479 aa            linear   VRT 09-MAR-2023
DEFINITION  probable cysteine--tRNA ligase, mitochondrial isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053917099
VERSION     XP_053917099.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061124.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..479
                     /product="probable cysteine--tRNA ligase, mitochondrial
                     isoform X3"
                     /calculated_mol_wt=54018
     Region          1..477
                     /region_name="PTZ00399"
                     /note="cysteinyl-tRNA-synthetase; Provisional"
                     /db_xref="CDD:240402"
     CDS             1..479
                     /gene="CARS2"
                     /coded_by="XM_054061124.1:165..1604"
                     /db_xref="GeneID:104068406"
ORIGIN      
        1 mtrffgikvi mvmgitdidd kiikranemn ispvalarvy eedfkqdmaa lkvlpptvym
       61 rvtenipqii sfikkiiang hayatlqgnv yfdvkswgkr ygvlttidpn tqdeavdtdk
      121 rhskdfalwk aakpqeiswt spwgkgrpgw hiecstissa vfgkqldiht ggidlafphh
      181 eneiaqcevy hqceqwgnyf lhsghlhvkg sqekmskslk nyitikdflk ksssdqfrmf
      241 clrsryssav efsdesmdda knllqavssf trdanayikg qlicdpvred ilwerlantk
      301 vtvkaafrdd fdtsravaai mdlihhgnrq lkavtkdtgs prssvvygsi isyiedffna
      361 lgmsfgerqv alggdhsall snvvdelvrf rtkvrhyala lpeaaeampv egdvraegqk
      421 eqkekrrqlm rerkplleac dslredlaaf gvhiqdraav stweiveggq teqqaekks
//
LOCUS       XP_053917108             566 aa            linear   VRT 09-MAR-2023
DEFINITION  probable cysteine--tRNA ligase, mitochondrial isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053917108
VERSION     XP_053917108.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061133.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..566
                     /product="probable cysteine--tRNA ligase, mitochondrial
                     isoform X4"
                     /calculated_mol_wt=63554
     Region          24..564
                     /region_name="PTZ00399"
                     /note="cysteinyl-tRNA-synthetase; Provisional"
                     /db_xref="CDD:240402"
     CDS             1..566
                     /gene="CARS2"
                     /coded_by="XM_054061133.1:167..1867"
                     /db_xref="GeneID:104068406"
ORIGIN      
        1 mlrlaargcg rgkaaargcg tgarrweppa gwdsgiaahn srsrrkeplv lgtervatwy
       61 scgptvydqa hlghacsyvr fdiirrimtr ffgikvimvm gitdiddkii kranemnisp
      121 valarvyeed fkqdmaalkv lpptvymrvt enipqiisfi kkiianghay atlqgnvyfd
      181 vkswgkrygv lttidpntqd eavdtdkrhs kdfalwkaak pqeiswtspw gkgrpgwhie
      241 cstissavfg kqldihtggi dlafphhene iaqcevyhqc eqwgnyflhs ghlhvkgsqe
      301 kmskslknyi tikdflkkss sdqfrmfclr sryssavefs desmddaknl lqavssftrd
      361 anayikgqli cdpvredilw erlantkvtv kaafrddfdt sravaaimdl ihhgnrqlka
      421 vtkdtgsprs svvygsiisy iedffnalgm sfgerqvalg gdhsallsnv vdelvrfrtk
      481 vrhyalalpe aaeampvegd vraegqkeqk ekrrqlmrer kplleacdsl redlaafgvh
      541 iqdraavstw eiveggqteq qaekks
//
LOCUS       XP_009556268             473 aa            linear   VRT 09-MAR-2023
DEFINITION  CCR4-NOT transcription complex subunit 11 [Cuculus canorus].
ACCESSION   XP_009556268
VERSION     XP_009556268.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557973.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556268.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..473
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..473
                     /product="CCR4-NOT transcription complex subunit 11"
                     /calculated_mol_wt=51885
     Region          334..457
                     /region_name="CNOT11"
                     /note="CCR4-NOT transcription complex subunit 11;
                     pfam10155"
                     /db_xref="CDD:401964"
     CDS             1..473
                     /gene="CNOT11"
                     /coded_by="XM_009557973.2:43..1464"
                     /db_xref="GeneID:104056696"
ORIGIN      
        1 mpggggspaa gtqagaesge aaggrmslsp kelssllsiv seeaggstfe glssafhhyf
       61 gkaehfrlgs vlvlllqqpd llpspaqrlt alyllwemyr teplaanpfa avfahllnpa
      121 perggdeaer tplsgflppi tppekfflsq lmlapprelf kktprqiasm dvgnmaqsvd
      181 isglqlalae rqselptqsk asfpsilsdp dpdssnsgfd ssvasqitea lvsgpkppie
      241 shfrpefirp ppplhicede lawlnpiepd htiqwdksmc vknstgveik rimakafksp
      301 ltspqqtqll gelekdpklv yhigltpakl pdlvennplv aiemllklmq ssqiteyfsv
      361 lvnmdmslhs mevvnrltta vdlppefihl yisncistce qikdkymqnr lvrlvcvflq
      421 slirnkiinv qdlfievqaf ciefsrirea aglfrllktl dtgenpsetk tsk
//
LOCUS       XP_053917131             411 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase RNF149 isoform X1 [Cuculus canorus].
ACCESSION   XP_053917131
VERSION     XP_053917131.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061156.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..411
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..411
                     /product="E3 ubiquitin-protein ligase RNF149 isoform X1"
                     /calculated_mol_wt=44787
     Region          39..182
                     /region_name="PA_GRAIL_like"
                     /note="PA _GRAIL_like: Protease-associated (PA) domain
                     GRAIL-like. This group includes PA domain containing E3
                     (ubiquitin ligases) similar to human GRAIL (gene related
                     to anergy in lymphocytes) protein. Proteins in this group
                     contain a C3H2C3 RING finger. E3...; cd02122"
                     /db_xref="CDD:239037"
     Site            143..145
                     /site_type="other"
                     /note="PA/protease or protease-like domain interface
                     [polypeptide binding]"
                     /db_xref="CDD:239037"
     Region          171..>221
                     /region_name="CrgA"
                     /note="Cell division protein CrgA; cl11506"
                     /db_xref="CDD:448289"
     Region          265..312
                     /region_name="RING_Ubox"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; cl17238"
                     /db_xref="CDD:473075"
     Site            order(266,269,284,286,289,292,303,306)
                     /site_type="other"
                     /note="cross-brace motif"
                     /db_xref="CDD:438111"
     CDS             1..411
                     /gene="RNF149"
                     /coded_by="XM_054061156.1:143..1378"
                     /db_xref="GeneID:104056695"
ORIGIN      
        1 mvrrarlalv aaalvalgar vsggaralew ytawvstayv eplsnrtvrg ntesgrygds
       61 spkegaqgmv giprgasprh megcaadtdy dvpllpgtpe gdpppwialv arggctfkdk
      121 vtnaarkraa avviynearf gnstvsmshl gtgntvvimv gypkgieile pvrrgipvkm
      181 sivvgtrhvq eyisgqsvvf vaiafitmmi islawlifyy iqrflytgsq fgnqghrket
      241 kkaisqlqlh tvkrgekgld vdvencavci enyklkdtvr ilpckhifhr tcidpwlldh
      301 rtcpmckldv ikalgywhqk remktragdp edvlevpipe sisgsvsvgs lsialqdddr
      361 nevselsass tnesvlqcts lkedagetta lldvdvsnnr hgehlsngns h
//
LOCUS       XP_053917140             401 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase RNF149 isoform X2 [Cuculus canorus].
ACCESSION   XP_053917140
VERSION     XP_053917140.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061165.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..401
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..401
                     /product="E3 ubiquitin-protein ligase RNF149 isoform X2"
                     /calculated_mol_wt=43521
     Region          39..182
                     /region_name="PA_GRAIL_like"
                     /note="PA _GRAIL_like: Protease-associated (PA) domain
                     GRAIL-like. This group includes PA domain containing E3
                     (ubiquitin ligases) similar to human GRAIL (gene related
                     to anergy in lymphocytes) protein. Proteins in this group
                     contain a C3H2C3 RING finger. E3...; cd02122"
                     /db_xref="CDD:239037"
     Site            143..145
                     /site_type="other"
                     /note="PA/protease or protease-like domain interface
                     [polypeptide binding]"
                     /db_xref="CDD:239037"
     Region          171..>221
                     /region_name="CrgA"
                     /note="Cell division protein CrgA; cl11506"
                     /db_xref="CDD:448289"
     Region          265..312
                     /region_name="RING_Ubox"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; cl17238"
                     /db_xref="CDD:473075"
     Site            order(266,269,284,286,289,292,303,306)
                     /site_type="other"
                     /note="cross-brace motif"
                     /db_xref="CDD:438111"
     CDS             1..401
                     /gene="RNF149"
                     /coded_by="XM_054061165.1:142..1347"
                     /db_xref="GeneID:104056695"
ORIGIN      
        1 mvrrarlalv aaalvalgar vsggaralew ytawvstayv eplsnrtvrg ntesgrygds
       61 spkegaqgmv giprgasprh megcaadtdy dvpllpgtpe gdpppwialv arggctfkdk
      121 vtnaarkraa avviynearf gnstvsmshl gtgntvvimv gypkgieile pvrrgipvkm
      181 sivvgtrhvq eyisgqsvvf vaiafitmmi islawlifyy iqrflytgsq fgnqghrket
      241 kkaisqlqlh tvkrgekgld vdvencavci enyklkdtvr ilpckhifhr tcidpwlldh
      301 rtcpmckldv ikalgywgdp edvlevpipe sisgsvsvgs lsialqdddr nevselsass
      361 tnesvlqcts lkedagetta lldvdvsnnr hgehlsngns h
//
LOCUS       XP_053917153            1928 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor 20 isoform X1 [Cuculus canorus].
ACCESSION   XP_053917153
VERSION     XP_053917153.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061178.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1928
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1928
                     /product="transcription factor 20 isoform X1"
                     /calculated_mol_wt=207709
     Region          1684..1911
                     /region_name="ePHD_TCF20"
                     /note="Extended PHD finger (ePHD) found in transcription
                     factor 20 (TCF-20); cd15699"
                     /db_xref="CDD:277169"
     Site            order(1865,1874..1878,1884,1906)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277169"
     CDS             1..1928
                     /gene="TCF20"
                     /coded_by="XM_054061178.1:37..5823"
                     /db_xref="GeneID:104055480"
ORIGIN      
        1 mqsfreqssy hgnqqsypqe vhgssrleef sprqqaqmfq sfgggagsgr rgaagastam
       61 pgessghqsy qgfrkeagef yymaankdpv asggqqppqr rpsgpvqsyg ppqgssfgsq
      121 ygseghvgqf qtqhstlggv shyqqdytgp fspgsaqyqq qasgqqqqvq qlrqqiyqsh
      181 qplpqassqs asgtshlqpm qrpstlpssa sgyqlrvgqf sqhyqppsss ssssfpspqr
      241 fgqsgqnydg sysvnsgsqy eghavgsnaq aygtqsnysf qaqpmksfeq sklpqsgqqg
      301 qqqqqhppqh vmqysnaatk lslqsqvgqy sqaevpvrsp mqfhqnfspi snpspaasvv
      361 qspscsstps plmpggenlq cgqsnmsmgs rnrilqmmpq lsptpsmmps pnahaggfkg
      421 fgleglqekr ltdpglssls alssqvanlp ntvqhmllsd alapqkkssk rsssskkads
      481 ctnsegssqa eeqlksplae sldggcssss edhgervrql sgqstssdtt ykggnlersn
      541 sspaqgsqne pskisgspaa redvaspdgk eavvavenap kvnekavgvi vsreamtgrv
      601 eksggqdkpa qddastatqa pasasgakea ghagtqpetq ggskgsksgd ntnhngegns
      661 qpghavvgpn fpartessks pgslrysykd niaagmqrni ggfpqypgqe kgdfpghser
      721 kgrnekfpsl lqevlqgyhh hpdrrysrna qehsgmagsl egamrpnili sqtneltnrg
      781 llnksmgsll egphwgpwdr ksssaapdmk qinladypla rkfdvesqss aheggalser
      841 rsvicdispl rqlvrdpgph pmghmgpegr sgrserlapg lsqsvilpgg lvsmetkmka
      901 hsgqikeedf eqskssasln nkktgdhchp agikhesfrg naspgaavsd aapdyipqqd
      961 srstqvrrap grtgssrgks psqyqdladk lkmspgrsrg pgtdlhhlnp hmtlservnr
     1021 gslhpaypqn segpslasay hanarphgfg dpnqslnsqy hykrqiyqqq qeeykdwass
     1081 taqgviaaaq hrqegarksp rqqqflervr splkndkdgm mylqgssyhd agqesgrcvm
     1141 gsdstqskct elkhgnqklq hhdsgwdlsr qtspakssgp lgaanqkrfc pqesdghrre
     1201 estdlpkpsn tmlrlpgqed qspqnplimr rrvrsfispi ptkrqpqemk nsgnedkgrl
     1261 mtsakegadk aynsyahssq sqdvgksvgk gdsfkdlpsp dsrncpavsl tspaktkilp
     1321 prkgrglkle aivqkitspn irrsvstnna etgadtvtld dilslksgpe ggnaaghgpe
     1381 aekrkgemsd qvgpasqdtt geitlprsse ewqsgeddkt kkevpetasv gkegagssaa
     1441 pppsqksggq grsdgsvsga galtfsdskt issssvftse pnpkseekdr dvtnispkpd
     1501 gfppkgyfps gkkkgrpigs vnkqkkqqqq qqqlpppppp ppapsqsseg vgggepkpkr
     1561 qrrerrkpaa qprkrkprra apivepqepe iklkyatqsv dktdsknksf fpyihvvnkc
     1621 elgavctiin aeeeeqnklv rgrkgqrsst pppsnaeskv lptstfmlqg pvvtessvlg
     1681 hlvcclcgkw asyrnmgdlf gpfypqdyaa tlpknpppkr atemqskvkv rhksasngsk
     1741 tdteeeeeqq qqkeqrslaa hprfkrrhrs edcsgasrsl srgasckkat tdsggggekt
     1801 pldskpsmpt seggtelelq ipelpldsne fwvhegcilw angiylvcgr lyglqeavei
     1861 aremkcshcq epgatlgcyn kgcsfryhyp caidadclln eenfsvrcpk hknkmvkgsl
     1921 steqserg
//
LOCUS       XP_009554901            1917 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor 20 isoform X2 [Cuculus canorus].
ACCESSION   XP_009554901
VERSION     XP_009554901.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556606.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554901.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1917
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1917
                     /product="transcription factor 20 isoform X2"
                     /calculated_mol_wt=206614
     Region          1684..1911
                     /region_name="ePHD_TCF20"
                     /note="Extended PHD finger (ePHD) found in transcription
                     factor 20 (TCF-20); cd15699"
                     /db_xref="CDD:277169"
     Site            order(1865,1874..1878,1884,1906)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277169"
     CDS             1..1917
                     /gene="TCF20"
                     /coded_by="XM_009556606.2:37..5790"
                     /db_xref="GeneID:104055480"
ORIGIN      
        1 mqsfreqssy hgnqqsypqe vhgssrleef sprqqaqmfq sfgggagsgr rgaagastam
       61 pgessghqsy qgfrkeagef yymaankdpv asggqqppqr rpsgpvqsyg ppqgssfgsq
      121 ygseghvgqf qtqhstlggv shyqqdytgp fspgsaqyqq qasgqqqqvq qlrqqiyqsh
      181 qplpqassqs asgtshlqpm qrpstlpssa sgyqlrvgqf sqhyqppsss ssssfpspqr
      241 fgqsgqnydg sysvnsgsqy eghavgsnaq aygtqsnysf qaqpmksfeq sklpqsgqqg
      301 qqqqqhppqh vmqysnaatk lslqsqvgqy sqaevpvrsp mqfhqnfspi snpspaasvv
      361 qspscsstps plmpggenlq cgqsnmsmgs rnrilqmmpq lsptpsmmps pnahaggfkg
      421 fgleglqekr ltdpglssls alssqvanlp ntvqhmllsd alapqkkssk rsssskkads
      481 ctnsegssqa eeqlksplae sldggcssss edhgervrql sgqstssdtt ykggnlersn
      541 sspaqgsqne pskisgspaa redvaspdgk eavvavenap kvnekavgvi vsreamtgrv
      601 eksggqdkpa qddastatqa pasasgakea ghagtqpetq ggskgsksgd ntnhngegns
      661 qpghavvgpn fpartessks pgslrysykd niaagmqrni ggfpqypgqe kgdfpghser
      721 kgrnekfpsl lqevlqgyhh hpdrrysrna qehsgmagsl egamrpnili sqtneltnrg
      781 llnksmgsll egphwgpwdr ksssaapdmk qinladypla rkfdvesqss aheggalser
      841 rsvicdispl rqlvrdpgph pmghmgpegr sgrserlapg lsqsvilpgg lvsmetkmka
      901 hsgqikeedf eqskssasln nkktgdhchp agikhesfrg naspgaavsd aapdyipqqd
      961 srstqvrrap grtgssrgks psqyqdladk lkmspgrsrg pgtdlhhlnp hmtlservnr
     1021 gslhpaypqn segpslasay hanarphgfg dpnqslnsqy hykrqiyqqq qeeykdwass
     1081 taqgviaaaq hrqegarksp rqqqflervr splkndkdgm mylqgssyhd agqesgrcvm
     1141 gsdstqskct elkhgnqklq hhdsgwdlsr qtspakssgp lgaanqkrfc pqesdghrre
     1201 estdlpkpsn tmlrlpgqed qspqnplimr rrvrsfispi ptkrqpqemk nsgnedkgrl
     1261 mtsakegadk aynsyahssq sqdvgksvgk gdsfkdlpsp dsrncpavsl tspaktkilp
     1321 prkgrglkle aivqkitspn irrsvstnna etgadtvtld dilslksgpe ggnaaghgpe
     1381 aekrkgemsd qvgpasqdtt geitlprsse ewqsgeddkt kkevpetasv gkegagssaa
     1441 pppsqksggq grsdgsvsga galtfsdskt issssvftse pnpkseekdr dvtnispkpd
     1501 gfppkgyfps gkkkgrpigs vnkqkkqqqq qqqlpppppp ppapsqsseg vgggepkpkr
     1561 qrrerrkpaa qprkrkprra apivepqepe iklkyatqsv dktdsknksf fpyihvvnkc
     1621 elgavctiin aeeeeqnklv rgrkgqrsst pppsnaeskv lptstfmlqg pvvtessvlg
     1681 hlvcclcgkw asyrnmgdlf gpfypqdyaa tlpknpppkr atemqskvkv rhksasngsk
     1741 tdteeeeeqq qqkeqrslaa hprfkrrhrs edcsgasrsl srgasckkat tdsggggekt
     1801 pldskpsmpt seggtelelq ipelpldsne fwvhegcilw angiylvcgr lyglqeavei
     1861 aremkcshcq epgatlgcyn kgcsfryhyp caidadclln eenfsvrcpk hkvrllr
//
LOCUS       XP_053917168            1939 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor 20 isoform X3 [Cuculus canorus].
ACCESSION   XP_053917168
VERSION     XP_053917168.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061193.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1939
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1939
                     /product="transcription factor 20 isoform X3"
                     /calculated_mol_wt=208858
     Region          1684..1911
                     /region_name="ePHD_TCF20"
                     /note="Extended PHD finger (ePHD) found in transcription
                     factor 20 (TCF-20); cd15699"
                     /db_xref="CDD:277169"
     Site            order(1865,1874..1878,1884,1906)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277169"
     CDS             1..1939
                     /gene="TCF20"
                     /coded_by="XM_054061193.1:148..5967"
                     /db_xref="GeneID:104055480"
ORIGIN      
        1 mqsfreqssy hgnqqsypqe vhgssrleef sprqqaqmfq sfgggagsgr rgaagastam
       61 pgessghqsy qgfrkeagef yymaankdpv asggqqppqr rpsgpvqsyg ppqgssfgsq
      121 ygseghvgqf qtqhstlggv shyqqdytgp fspgsaqyqq qasgqqqqvq qlrqqiyqsh
      181 qplpqassqs asgtshlqpm qrpstlpssa sgyqlrvgqf sqhyqppsss ssssfpspqr
      241 fgqsgqnydg sysvnsgsqy eghavgsnaq aygtqsnysf qaqpmksfeq sklpqsgqqg
      301 qqqqqhppqh vmqysnaatk lslqsqvgqy sqaevpvrsp mqfhqnfspi snpspaasvv
      361 qspscsstps plmpggenlq cgqsnmsmgs rnrilqmmpq lsptpsmmps pnahaggfkg
      421 fgleglqekr ltdpglssls alssqvanlp ntvqhmllsd alapqkkssk rsssskkads
      481 ctnsegssqa eeqlksplae sldggcssss edhgervrql sgqstssdtt ykggnlersn
      541 sspaqgsqne pskisgspaa redvaspdgk eavvavenap kvnekavgvi vsreamtgrv
      601 eksggqdkpa qddastatqa pasasgakea ghagtqpetq ggskgsksgd ntnhngegns
      661 qpghavvgpn fpartessks pgslrysykd niaagmqrni ggfpqypgqe kgdfpghser
      721 kgrnekfpsl lqevlqgyhh hpdrrysrna qehsgmagsl egamrpnili sqtneltnrg
      781 llnksmgsll egphwgpwdr ksssaapdmk qinladypla rkfdvesqss aheggalser
      841 rsvicdispl rqlvrdpgph pmghmgpegr sgrserlapg lsqsvilpgg lvsmetkmka
      901 hsgqikeedf eqskssasln nkktgdhchp agikhesfrg naspgaavsd aapdyipqqd
      961 srstqvrrap grtgssrgks psqyqdladk lkmspgrsrg pgtdlhhlnp hmtlservnr
     1021 gslhpaypqn segpslasay hanarphgfg dpnqslnsqy hykrqiyqqq qeeykdwass
     1081 taqgviaaaq hrqegarksp rqqqflervr splkndkdgm mylqgssyhd agqesgrcvm
     1141 gsdstqskct elkhgnqklq hhdsgwdlsr qtspakssgp lgaanqkrfc pqesdghrre
     1201 estdlpkpsn tmlrlpgqed qspqnplimr rrvrsfispi ptkrqpqemk nsgnedkgrl
     1261 mtsakegadk aynsyahssq sqdvgksvgk gdsfkdlpsp dsrncpavsl tspaktkilp
     1321 prkgrglkle aivqkitspn irrsvstnna etgadtvtld dilslksgpe ggnaaghgpe
     1381 aekrkgemsd qvgpasqdtt geitlprsse ewqsgeddkt kkevpetasv gkegagssaa
     1441 pppsqksggq grsdgsvsga galtfsdskt issssvftse pnpkseekdr dvtnispkpd
     1501 gfppkgyfps gkkkgrpigs vnkqkkqqqq qqqlpppppp ppapsqsseg vgggepkpkr
     1561 qrrerrkpaa qprkrkprra apivepqepe iklkyatqsv dktdsknksf fpyihvvnkc
     1621 elgavctiin aeeeeqnklv rgrkgqrsst pppsnaeskv lptstfmlqg pvvtessvlg
     1681 hlvcclcgkw asyrnmgdlf gpfypqdyaa tlpknpppkr atemqskvkv rhksasngsk
     1741 tdteeeeeqq qqkeqrslaa hprfkrrhrs edcsgasrsl srgasckkat tdsggggekt
     1801 pldskpsmpt seggtelelq ipelpldsne fwvhegcilw angiylvcgr lyglqeavei
     1861 aremkcshcq epgatlgcyn kgcsfryhyp caidadclln eenfsvrcpk hkpllpcslp
     1921 slqnkmvkgs lsteqserg
//
LOCUS       XP_053917175            1939 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor 20 isoform X3 [Cuculus canorus].
ACCESSION   XP_053917175
VERSION     XP_053917175.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061200.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1939
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1939
                     /product="transcription factor 20 isoform X3"
                     /calculated_mol_wt=208858
     Region          1684..1911
                     /region_name="ePHD_TCF20"
                     /note="Extended PHD finger (ePHD) found in transcription
                     factor 20 (TCF-20); cd15699"
                     /db_xref="CDD:277169"
     Site            order(1865,1874..1878,1884,1906)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277169"
     CDS             1..1939
                     /gene="TCF20"
                     /coded_by="XM_054061200.1:147..5966"
                     /db_xref="GeneID:104055480"
ORIGIN      
        1 mqsfreqssy hgnqqsypqe vhgssrleef sprqqaqmfq sfgggagsgr rgaagastam
       61 pgessghqsy qgfrkeagef yymaankdpv asggqqppqr rpsgpvqsyg ppqgssfgsq
      121 ygseghvgqf qtqhstlggv shyqqdytgp fspgsaqyqq qasgqqqqvq qlrqqiyqsh
      181 qplpqassqs asgtshlqpm qrpstlpssa sgyqlrvgqf sqhyqppsss ssssfpspqr
      241 fgqsgqnydg sysvnsgsqy eghavgsnaq aygtqsnysf qaqpmksfeq sklpqsgqqg
      301 qqqqqhppqh vmqysnaatk lslqsqvgqy sqaevpvrsp mqfhqnfspi snpspaasvv
      361 qspscsstps plmpggenlq cgqsnmsmgs rnrilqmmpq lsptpsmmps pnahaggfkg
      421 fgleglqekr ltdpglssls alssqvanlp ntvqhmllsd alapqkkssk rsssskkads
      481 ctnsegssqa eeqlksplae sldggcssss edhgervrql sgqstssdtt ykggnlersn
      541 sspaqgsqne pskisgspaa redvaspdgk eavvavenap kvnekavgvi vsreamtgrv
      601 eksggqdkpa qddastatqa pasasgakea ghagtqpetq ggskgsksgd ntnhngegns
      661 qpghavvgpn fpartessks pgslrysykd niaagmqrni ggfpqypgqe kgdfpghser
      721 kgrnekfpsl lqevlqgyhh hpdrrysrna qehsgmagsl egamrpnili sqtneltnrg
      781 llnksmgsll egphwgpwdr ksssaapdmk qinladypla rkfdvesqss aheggalser
      841 rsvicdispl rqlvrdpgph pmghmgpegr sgrserlapg lsqsvilpgg lvsmetkmka
      901 hsgqikeedf eqskssasln nkktgdhchp agikhesfrg naspgaavsd aapdyipqqd
      961 srstqvrrap grtgssrgks psqyqdladk lkmspgrsrg pgtdlhhlnp hmtlservnr
     1021 gslhpaypqn segpslasay hanarphgfg dpnqslnsqy hykrqiyqqq qeeykdwass
     1081 taqgviaaaq hrqegarksp rqqqflervr splkndkdgm mylqgssyhd agqesgrcvm
     1141 gsdstqskct elkhgnqklq hhdsgwdlsr qtspakssgp lgaanqkrfc pqesdghrre
     1201 estdlpkpsn tmlrlpgqed qspqnplimr rrvrsfispi ptkrqpqemk nsgnedkgrl
     1261 mtsakegadk aynsyahssq sqdvgksvgk gdsfkdlpsp dsrncpavsl tspaktkilp
     1321 prkgrglkle aivqkitspn irrsvstnna etgadtvtld dilslksgpe ggnaaghgpe
     1381 aekrkgemsd qvgpasqdtt geitlprsse ewqsgeddkt kkevpetasv gkegagssaa
     1441 pppsqksggq grsdgsvsga galtfsdskt issssvftse pnpkseekdr dvtnispkpd
     1501 gfppkgyfps gkkkgrpigs vnkqkkqqqq qqqlpppppp ppapsqsseg vgggepkpkr
     1561 qrrerrkpaa qprkrkprra apivepqepe iklkyatqsv dktdsknksf fpyihvvnkc
     1621 elgavctiin aeeeeqnklv rgrkgqrsst pppsnaeskv lptstfmlqg pvvtessvlg
     1681 hlvcclcgkw asyrnmgdlf gpfypqdyaa tlpknpppkr atemqskvkv rhksasngsk
     1741 tdteeeeeqq qqkeqrslaa hprfkrrhrs edcsgasrsl srgasckkat tdsggggekt
     1801 pldskpsmpt seggtelelq ipelpldsne fwvhegcilw angiylvcgr lyglqeavei
     1861 aremkcshcq epgatlgcyn kgcsfryhyp caidadclln eenfsvrcpk hkpllpcslp
     1921 slqnkmvkgs lsteqserg
//
LOCUS       XP_053917181            1939 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor 20 isoform X3 [Cuculus canorus].
ACCESSION   XP_053917181
VERSION     XP_053917181.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061206.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1939
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1939
                     /product="transcription factor 20 isoform X3"
                     /calculated_mol_wt=208858
     Region          1684..1911
                     /region_name="ePHD_TCF20"
                     /note="Extended PHD finger (ePHD) found in transcription
                     factor 20 (TCF-20); cd15699"
                     /db_xref="CDD:277169"
     Site            order(1865,1874..1878,1884,1906)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277169"
     CDS             1..1939
                     /gene="TCF20"
                     /coded_by="XM_054061206.1:148..5967"
                     /db_xref="GeneID:104055480"
ORIGIN      
        1 mqsfreqssy hgnqqsypqe vhgssrleef sprqqaqmfq sfgggagsgr rgaagastam
       61 pgessghqsy qgfrkeagef yymaankdpv asggqqppqr rpsgpvqsyg ppqgssfgsq
      121 ygseghvgqf qtqhstlggv shyqqdytgp fspgsaqyqq qasgqqqqvq qlrqqiyqsh
      181 qplpqassqs asgtshlqpm qrpstlpssa sgyqlrvgqf sqhyqppsss ssssfpspqr
      241 fgqsgqnydg sysvnsgsqy eghavgsnaq aygtqsnysf qaqpmksfeq sklpqsgqqg
      301 qqqqqhppqh vmqysnaatk lslqsqvgqy sqaevpvrsp mqfhqnfspi snpspaasvv
      361 qspscsstps plmpggenlq cgqsnmsmgs rnrilqmmpq lsptpsmmps pnahaggfkg
      421 fgleglqekr ltdpglssls alssqvanlp ntvqhmllsd alapqkkssk rsssskkads
      481 ctnsegssqa eeqlksplae sldggcssss edhgervrql sgqstssdtt ykggnlersn
      541 sspaqgsqne pskisgspaa redvaspdgk eavvavenap kvnekavgvi vsreamtgrv
      601 eksggqdkpa qddastatqa pasasgakea ghagtqpetq ggskgsksgd ntnhngegns
      661 qpghavvgpn fpartessks pgslrysykd niaagmqrni ggfpqypgqe kgdfpghser
      721 kgrnekfpsl lqevlqgyhh hpdrrysrna qehsgmagsl egamrpnili sqtneltnrg
      781 llnksmgsll egphwgpwdr ksssaapdmk qinladypla rkfdvesqss aheggalser
      841 rsvicdispl rqlvrdpgph pmghmgpegr sgrserlapg lsqsvilpgg lvsmetkmka
      901 hsgqikeedf eqskssasln nkktgdhchp agikhesfrg naspgaavsd aapdyipqqd
      961 srstqvrrap grtgssrgks psqyqdladk lkmspgrsrg pgtdlhhlnp hmtlservnr
     1021 gslhpaypqn segpslasay hanarphgfg dpnqslnsqy hykrqiyqqq qeeykdwass
     1081 taqgviaaaq hrqegarksp rqqqflervr splkndkdgm mylqgssyhd agqesgrcvm
     1141 gsdstqskct elkhgnqklq hhdsgwdlsr qtspakssgp lgaanqkrfc pqesdghrre
     1201 estdlpkpsn tmlrlpgqed qspqnplimr rrvrsfispi ptkrqpqemk nsgnedkgrl
     1261 mtsakegadk aynsyahssq sqdvgksvgk gdsfkdlpsp dsrncpavsl tspaktkilp
     1321 prkgrglkle aivqkitspn irrsvstnna etgadtvtld dilslksgpe ggnaaghgpe
     1381 aekrkgemsd qvgpasqdtt geitlprsse ewqsgeddkt kkevpetasv gkegagssaa
     1441 pppsqksggq grsdgsvsga galtfsdskt issssvftse pnpkseekdr dvtnispkpd
     1501 gfppkgyfps gkkkgrpigs vnkqkkqqqq qqqlpppppp ppapsqsseg vgggepkpkr
     1561 qrrerrkpaa qprkrkprra apivepqepe iklkyatqsv dktdsknksf fpyihvvnkc
     1621 elgavctiin aeeeeqnklv rgrkgqrsst pppsnaeskv lptstfmlqg pvvtessvlg
     1681 hlvcclcgkw asyrnmgdlf gpfypqdyaa tlpknpppkr atemqskvkv rhksasngsk
     1741 tdteeeeeqq qqkeqrslaa hprfkrrhrs edcsgasrsl srgasckkat tdsggggekt
     1801 pldskpsmpt seggtelelq ipelpldsne fwvhegcilw angiylvcgr lyglqeavei
     1861 aremkcshcq epgatlgcyn kgcsfryhyp caidadclln eenfsvrcpk hkpllpcslp
     1921 slqnkmvkgs lsteqserg
//
LOCUS       XP_053917189            1847 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor 20 isoform X4 [Cuculus canorus].
ACCESSION   XP_053917189
VERSION     XP_053917189.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061214.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1847
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1847
                     /product="transcription factor 20 isoform X4"
                     /calculated_mol_wt=199033
     Region          1592..1819
                     /region_name="ePHD_TCF20"
                     /note="Extended PHD finger (ePHD) found in transcription
                     factor 20 (TCF-20); cd15699"
                     /db_xref="CDD:277169"
     Site            order(1773,1782..1786,1792,1814)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277169"
     CDS             1..1847
                     /gene="TCF20"
                     /coded_by="XM_054061214.1:37..5580"
                     /db_xref="GeneID:104055480"
ORIGIN      
        1 mqsfreqssy hgnqqsypqe vhgssrleef sprqqaqmfq sfgggagsgr rgaagastam
       61 pgsaqyqqqa sgqqqqvqql rqqiyqshqp lpqassqsas gtshlqpmqr pstlpssasg
      121 yqlrvgqfsq hyqppsssss ssfpspqrfg qsgqnydgsy svnsgsqyeg havgsnaqay
      181 gtqsnysfqa qpmksfeqsk lpqsgqqgqq qqqhppqhvm qysnaatkls lqsqvgqysq
      241 aevpvrspmq fhqnfspisn pspaasvvqs pscsstpspl mpggenlqcg qsnmsmgsrn
      301 rilqmmpqls ptpsmmpspn ahaggfkgfg leglqekrlt dpglsslsal ssqvanlpnt
      361 vqhmllsdal apqkksskrs ssskkadsct nsegssqaee qlksplaesl dggcssssed
      421 hgervrqlsg qstssdttyk ggnlersnss paqgsqneps kisgspaare dvaspdgkea
      481 vvavenapkv nekavgvivs reamtgrvek sggqdkpaqd dastatqapa sasgakeagh
      541 agtqpetqgg skgsksgdnt nhngegnsqp ghavvgpnfp artesskspg slrysykdni
      601 aagmqrnigg fpqypgqekg dfpghserkg rnekfpsllq evlqgyhhhp drrysrnaqe
      661 hsgmagsleg amrpnilisq tneltnrgll nksmgslleg phwgpwdrks ssaapdmkqi
      721 nladyplark fdvesqssah eggalserrs vicdisplrq lvrdpgphpm ghmgpegrsg
      781 rserlapgls qsvilpgglv smetkmkahs gqikeedfeq skssaslnnk ktgdhchpag
      841 ikhesfrgna spgaavsdaa pdyipqqdsr stqvrrapgr tgssrgksps qyqdladklk
      901 mspgrsrgpg tdlhhlnphm tlservnrgs lhpaypqnse gpslasayha narphgfgdp
      961 nqslnsqyhy krqiyqqqqe eykdwassta qgviaaaqhr qegarksprq qqflervrsp
     1021 lkndkdgmmy lqgssyhdag qesgrcvmgs dstqskctel khgnqklqhh dsgwdlsrqt
     1081 spakssgplg aanqkrfcpq esdghrrees tdlpkpsntm lrlpgqedqs pqnplimrrr
     1141 vrsfispipt krqpqemkns gnedkgrlmt sakegadkay nsyahssqsq dvgksvgkgd
     1201 sfkdlpspds rncpavslts paktkilppr kgrglkleai vqkitspnir rsvstnnaet
     1261 gadtvtlddi lslksgpegg naaghgpeae krkgemsdqv gpasqdttge itlprsseew
     1321 qsgeddktkk evpetasvgk egagssaapp psqksggqgr sdgsvsgaga ltfsdsktis
     1381 sssvftsepn pkseekdrdv tnispkpdgf ppkgyfpsgk kkgrpigsvn kqkkqqqqqq
     1441 qlpppppppp apsqssegvg ggepkpkrqr rerrkpaaqp rkrkprraap ivepqepeik
     1501 lkyatqsvdk tdsknksffp yihvvnkcel gavctiinae eeeqnklvrg rkgqrsstpp
     1561 psnaeskvlp tstfmlqgpv vtessvlghl vcclcgkwas yrnmgdlfgp fypqdyaatl
     1621 pknpppkrat emqskvkvrh ksasngsktd teeeeeqqqq keqrslaahp rfkrrhrsed
     1681 csgasrslsr gasckkattd sggggektpl dskpsmptse ggtelelqip elpldsnefw
     1741 vhegcilwan giylvcgrly glqeaveiar emkcshcqep gatlgcynkg csfryhypca
     1801 idadcllnee nfsvrcpkhk pllpcslpsl qnkmvkgsls teqserg
//
LOCUS       XP_053917201             262 aa            linear   VRT 09-MAR-2023
DEFINITION  general transcription factor IIF subunit 2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053917201
VERSION     XP_053917201.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061226.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..262
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..262
                     /product="general transcription factor IIF subunit 2
                     isoform X1"
                     /calculated_mol_wt=29589
     Region          5..131
                     /region_name="TFIIF_beta"
                     /note="Transcription initiation factor IIF, beta subunit;
                     cd07980"
                     /db_xref="CDD:259828"
     Site            order(5,13,15,18..25,28,31,34,39..47,53,90..97,117,
                     119..120,126)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:259828"
     Region          189..253
                     /region_name="TFIIF_beta"
                     /note="TFIIF, beta subunit HTH domain; pfam02270"
                     /db_xref="CDD:426691"
     CDS             1..262
                     /gene="GTF2F2"
                     /coded_by="XM_054061226.1:135..923"
                     /db_xref="GeneID:104056530"
ORIGIN      
        1 mgekgevdlt gvkqntgmwl vkvpkylaqq wnkasgrgev gklritktqg rsevsftlne
       61 elasisdigg kpasvsapre hpfllqsvgg qtlivftess vesqseekae sssadklale
      121 givvqraecr paasenymkl krlqieessk pvrlsqqlek avttnykpva nhqynieyer
      181 kkkedgkrar adkpqvldml fsafekhqyy nikdlvditk qpviylkeil rdigiynvkg
      241 thkntwelkp eyrhyqaedk sd
//
LOCUS       XP_053917211             249 aa            linear   VRT 09-MAR-2023
DEFINITION  general transcription factor IIF subunit 2 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053917211
VERSION     XP_053917211.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061236.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..249
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..249
                     /product="general transcription factor IIF subunit 2
                     isoform X2"
                     /calculated_mol_wt=28238
     Site            order(5,13,15,18..25,28,31,34,39..47,53,90..100,104,
                     106..107,113)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:259828"
     Region          6..247
                     /region_name="TFIIF_beta"
                     /note="Transcription initiation factor IIF, beta subunit;
                     cl02122"
                     /db_xref="CDD:445677"
     CDS             1..249
                     /gene="GTF2F2"
                     /coded_by="XM_054061236.1:135..884"
                     /db_xref="GeneID:104056530"
ORIGIN      
        1 mgekgevdlt gvkqntgmwl vkvpkylaqq wnkasgrgev gklritktqg rsevsftlne
       61 elasisdigg kpasvsapre hpfllqsvgg qtlivftess vdklalegiv vqraecrpaa
      121 senymklkrl qieesskpvr lsqqlekavt tnykpvanhq ynieyerkkk edgkraradk
      181 pqvldmlfsa fekhqyynik dlvditkqpv iylkeilrdi giynvkgthk ntwelkpeyr
      241 hyqaedksd
//
LOCUS       XP_009556061             257 aa            linear   VRT 09-MAR-2023
DEFINITION  BTB/POZ domain-containing protein KCTD4 [Cuculus canorus].
ACCESSION   XP_009556061
VERSION     XP_009556061.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557766.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..257
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..257
                     /product="BTB/POZ domain-containing protein KCTD4"
                     /calculated_mol_wt=29490
     Region          32..117
                     /region_name="BTB_POZ_KCTD4"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     channel tetramerization domain-containing protein 4
                     (KCTD4); cd18364"
                     /db_xref="CDD:349673"
     Region          136..257
                     /region_name="KCTD4_C"
                     /note="BTB/POZ domain-containing protein KCTD4 C-terminus;
                     pfam19323"
                     /db_xref="CDD:437155"
     CDS             1..257
                     /gene="KCTD4"
                     /coded_by="XM_009557766.2:162..935"
                     /db_xref="GeneID:104056509"
ORIGIN      
        1 merkisrrek eseekqnnse gseqdkdykt slitlnvggy lyitqkqtlt kypdsflegi
       61 ingkimcpfd adghyfidrd gllfrhilnf lrngelllpe gfrenqllaq eadffqlkvl
      121 sdavksrwek eqlatrettf leitdshdrs qglrifcnap dfiskiksri vlvsksrldg
      181 fpeefsvssn iiqfkyfiks engtrlvlke dntfvctlet lkfeaimtal kcgfrlltsl
      241 dcskgsivhs dalhfik
//
LOCUS       XP_053917239             172 aa            linear   VRT 09-MAR-2023
DEFINITION  translationally-controlled tumor protein [Cuculus canorus].
ACCESSION   XP_053917239
VERSION     XP_053917239.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061264.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..172
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..172
                     /product="translationally-controlled tumor protein"
                     /calculated_mol_wt=19371
     Region          1..167
                     /region_name="TCTP"
                     /note="Translationally controlled tumour protein;
                     pfam00838"
                     /db_xref="CDD:459957"
     CDS             1..172
                     /gene="TPT1"
                     /coded_by="XM_054061264.1:130..648"
                     /db_xref="GeneID:104056508"
ORIGIN      
        1 miiyrdcisq demfsdiyki qevanglcle vegkmvtrte gqiddsligg nasaegpege
       61 gteatvitgv divinhhlqe tsftkesykk yikdymkaik arleehkper vkpfmtgaae
      121 qikhilanfk nyqffvgenm npdgmvalld fredgvtpym iffkdgleie kc
//
LOCUS       XP_053917255             434 aa            linear   VRT 09-MAR-2023
DEFINITION  acyl-coenzyme A thioesterase 9, mitochondrial isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053917255
VERSION     XP_053917255.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061280.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..434
                     /product="acyl-coenzyme A thioesterase 9, mitochondrial
                     isoform X1"
                     /calculated_mol_wt=49518
     Region          80..421
                     /region_name="PLN02647"
                     /note="acyl-CoA thioesterase"
                     /db_xref="CDD:215349"
     CDS             1..434
                     /gene="ACOT9"
                     /coded_by="XM_054061280.1:29..1333"
                     /db_xref="GeneID:104059411"
ORIGIN      
        1 mlaarlytmr klpsllartl tsgtsgspll pdmfeghspi hvnnvrsrlr divgastnwr
       61 dhvqamqerk alhtllakrq edlpprrmkd sylevilplg sqpeirekyl nvhnsvrfgr
      121 iledldslgv licythtkqe mqprsplsiv talvdkivlc kkiihpdcdi kftgnvswvg
      181 rtsmevkmhm lqlhdgdysp vldatfvmva rdpenkrpaf vnplvpetpe eeeifkqgel
      241 nklkridfst asllkmapta eerniihdif lntldtrtvs frsrklppss vwmedaklkg
      301 lqichpqern ifnrifggfl mrkafelgwa tacscggcrp fivsvddimf qrpvevgsll
      361 llsgqvcyte knyiqvrvhs evydpdtreh qttnifhftf ksenevpqvv pktygesmly
      421 ldgkrhfaai mkei
//
LOCUS       XP_053917265             426 aa            linear   VRT 09-MAR-2023
DEFINITION  acyl-coenzyme A thioesterase 9, mitochondrial isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053917265
VERSION     XP_053917265.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061290.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..426
                     /product="acyl-coenzyme A thioesterase 9, mitochondrial
                     isoform X2"
                     /calculated_mol_wt=48597
     Region          72..413
                     /region_name="PLN02647"
                     /note="acyl-CoA thioesterase"
                     /db_xref="CDD:215349"
     CDS             1..426
                     /gene="ACOT9"
                     /coded_by="XM_054061290.1:662..1942"
                     /db_xref="GeneID:104059411"
ORIGIN      
        1 mrklpsllar tltsgtsgsp llpdmfeghs pihvnnvrsr lrdivgastn wrdhvqamqe
       61 rkalhtllak rqedlpprrm kdsylevilp lgsqpeirek ylnvhnsvrf griledldsl
      121 gvlicythtk qemqprspls ivtalvdkiv lckkiihpdc dikftgnvsw vgrtsmevkm
      181 hmlqlhdgdy spvldatfvm vardpenkrp afvnplvpet peeeeifkqg elnklkridf
      241 stasllkmap taeerniihd iflntldtrt vsfrsrklpp ssvwmedakl kglqichpqe
      301 rnifnrifgg flmrkafelg watacscggc rpfivsvddi mfqrpvevgs llllsgqvcy
      361 teknyiqvrv hsevydpdtr ehqttnifhf tfksenevpq vvpktygesm lyldgkrhfa
      421 aimkei
//
LOCUS       XP_053917271             425 aa            linear   VRT 09-MAR-2023
DEFINITION  acyl-coenzyme A thioesterase 9, mitochondrial isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053917271
VERSION     XP_053917271.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061296.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..425
                     /product="acyl-coenzyme A thioesterase 9, mitochondrial
                     isoform X3"
                     /calculated_mol_wt=48562
     Region          71..412
                     /region_name="PLN02647"
                     /note="acyl-CoA thioesterase"
                     /db_xref="CDD:215349"
     CDS             1..425
                     /gene="ACOT9"
                     /coded_by="XM_054061296.1:28..1305"
                     /db_xref="GeneID:104059411"
ORIGIN      
        1 mlaarlytmr klpsllartl tsgtsgspll pdmfevrsrl rdivgastnw rdhvqamqer
       61 kalhtllakr qedlpprrmk dsylevilpl gsqpeireky lnvhnsvrfg riledldslg
      121 vlicythtkq emqprsplsi vtalvdkivl ckkiihpdcd ikftgnvswv grtsmevkmh
      181 mlqlhdgdys pvldatfvmv ardpenkrpa fvnplvpetp eeeeifkqge lnklkridfs
      241 tasllkmapt aeerniihdi flntldtrtv sfrsrklpps svwmedaklk glqichpqer
      301 nifnrifggf lmrkafelgw atacscggcr pfivsvddim fqrpvevgsl lllsgqvcyt
      361 eknyiqvrvh sevydpdtre hqttnifhft fksenevpqv vpktygesml yldgkrhfaa
      421 imkei
//
LOCUS       XP_053917282             417 aa            linear   VRT 09-MAR-2023
DEFINITION  acyl-coenzyme A thioesterase 9, mitochondrial isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053917282
VERSION     XP_053917282.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061307.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..417
                     /product="acyl-coenzyme A thioesterase 9, mitochondrial
                     isoform X4"
                     /calculated_mol_wt=47641
     Region          63..404
                     /region_name="PLN02647"
                     /note="acyl-CoA thioesterase"
                     /db_xref="CDD:215349"
     CDS             1..417
                     /gene="ACOT9"
                     /coded_by="XM_054061307.1:30..1283"
                     /db_xref="GeneID:104059411"
ORIGIN      
        1 mrklpsllar tltsgtsgsp llpdmfevrs rlrdivgast nwrdhvqamq erkalhtlla
       61 krqedlpprr mkdsylevil plgsqpeire kylnvhnsvr fgriledlds lgvlicytht
      121 kqemqprspl sivtalvdki vlckkiihpd cdikftgnvs wvgrtsmevk mhmlqlhdgd
      181 yspvldatfv mvardpenkr pafvnplvpe tpeeeeifkq gelnklkrid fstasllkma
      241 ptaeerniih diflntldtr tvsfrsrklp pssvwmedak lkglqichpq ernifnrifg
      301 gflmrkafel gwatacscgg crpfivsvdd imfqrpvevg sllllsgqvc yteknyiqvr
      361 vhsevydpdt rehqttnifh ftfksenevp qvvpktyges mlyldgkrhf aaimkei
//
LOCUS       XP_053917290             369 aa            linear   VRT 09-MAR-2023
DEFINITION  acyl-coenzyme A thioesterase 9, mitochondrial isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053917290
VERSION     XP_053917290.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061315.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..369
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..369
                     /product="acyl-coenzyme A thioesterase 9, mitochondrial
                     isoform X5"
                     /calculated_mol_wt=42321
     Region          15..356
                     /region_name="PLN02647"
                     /note="acyl-CoA thioesterase"
                     /db_xref="CDD:215349"
     CDS             1..369
                     /gene="ACOT9"
                     /coded_by="XM_054061315.1:109..1218"
                     /db_xref="GeneID:104059411"
ORIGIN      
        1 mqerkalhtl lakrqedlpp rrmkdsylev ilplgsqpei rekylnvhns vrfgriledl
       61 dslgvlicyt htkqemqprs plsivtalvd kivlckkiih pdcdikftgn vswvgrtsme
      121 vkmhmlqlhd gdyspvldat fvmvardpen krpafvnplv petpeeeeif kqgelnklkr
      181 idfstasllk maptaeerni ihdiflntld trtvsfrsrk lppssvwmed aklkglqich
      241 pqernifnri fggflmrkaf elgwatacsc ggcrpfivsv ddimfqrpve vgsllllsgq
      301 vcyteknyiq vrvhsevydp dtrehqttni fhftfksene vpqvvpktyg esmlyldgkr
      361 hfaaimkei
//
LOCUS       XP_053917298             426 aa            linear   VRT 09-MAR-2023
DEFINITION  acyl-coenzyme A thioesterase 9, mitochondrial isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053917298
VERSION     XP_053917298.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061323.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..426
                     /product="acyl-coenzyme A thioesterase 9, mitochondrial
                     isoform X2"
                     /calculated_mol_wt=48597
     Region          72..413
                     /region_name="PLN02647"
                     /note="acyl-CoA thioesterase"
                     /db_xref="CDD:215349"
     CDS             1..426
                     /gene="ACOT9"
                     /coded_by="XM_054061323.1:155..1435"
                     /db_xref="GeneID:104059411"
ORIGIN      
        1 mrklpsllar tltsgtsgsp llpdmfeghs pihvnnvrsr lrdivgastn wrdhvqamqe
       61 rkalhtllak rqedlpprrm kdsylevilp lgsqpeirek ylnvhnsvrf griledldsl
      121 gvlicythtk qemqprspls ivtalvdkiv lckkiihpdc dikftgnvsw vgrtsmevkm
      181 hmlqlhdgdy spvldatfvm vardpenkrp afvnplvpet peeeeifkqg elnklkridf
      241 stasllkmap taeerniihd iflntldtrt vsfrsrklpp ssvwmedakl kglqichpqe
      301 rnifnrifgg flmrkafelg watacscggc rpfivsvddi mfqrpvevgs llllsgqvcy
      361 teknyiqvrv hsevydpdtr ehqttnifhf tfksenevpq vvpktygesm lyldgkrhfa
      421 aimkei
//
LOCUS       XP_053917312             264 aa            linear   VRT 09-MAR-2023
DEFINITION  peroxiredoxin-4 isoform X1 [Cuculus canorus].
ACCESSION   XP_053917312
VERSION     XP_053917312.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061337.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..264
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..264
                     /product="peroxiredoxin-4 isoform X1"
                     /calculated_mol_wt=29672
     Region          74..245
                     /region_name="PRX_Typ2cys"
                     /note="Peroxiredoxin (PRX) family, Typical 2-Cys PRX
                     subfamily; PRXs are thiol-specific antioxidant (TSA)
                     proteins, which confer a protective role in cells through
                     its peroxidase activity by reducing hydrogen peroxide,
                     peroxynitrite, and organic hydroperoxides; cd03015"
                     /db_xref="CDD:239313"
     Site            order(74,115..116,119,182,192,205..207,209..211,215..216,
                     223,238..241)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239313"
     Site            order(113,147..148,173,175,187)
                     /site_type="other"
                     /note="decamer (pentamer of dimers) interface [polypeptide
                     binding]"
                     /db_xref="CDD:239313"
     Site            order(114,117,193)
                     /site_type="active"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:239313"
     Site            order(117,238)
                     /site_type="active"
                     /note="peroxidatic and resolving cysteines [active]"
                     /db_xref="CDD:239313"
     CDS             1..264
                     /gene="PRDX4"
                     /coded_by="XM_054061337.1:52..846"
                     /db_xref="GeneID:128851625"
ORIGIN      
        1 meagwrwlra wratllllvv lavavgdeaa eepraarqrg deqchyyagg qvypgeaarv
       61 pvsdhslhls qakiskpapy wegtavinge fkelkltdye gkylvfffyp ldftfvcpte
      121 iiafsdriee fraintevva csvdskfthl awintprkqg glgpmkipll sdlthqiakd
      181 ygvyledqgh tlrglfiidd krilrqitmn dlpvgrsvde tlrlvqafqy tdkhgevcpa
      241 gwkpgsetii pdpagklkyf dkln
//
LOCUS       XP_053917323             264 aa            linear   VRT 09-MAR-2023
DEFINITION  peroxiredoxin-4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053917323
VERSION     XP_053917323.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061348.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..264
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..264
                     /product="peroxiredoxin-4 isoform X2"
                     /calculated_mol_wt=29909
     Region          74..245
                     /region_name="PRX_Typ2cys"
                     /note="Peroxiredoxin (PRX) family, Typical 2-Cys PRX
                     subfamily; PRXs are thiol-specific antioxidant (TSA)
                     proteins, which confer a protective role in cells through
                     its peroxidase activity by reducing hydrogen peroxide,
                     peroxynitrite, and organic hydroperoxides; cd03015"
                     /db_xref="CDD:239313"
     Site            order(74,115..116,119,182,192,205..207,209..211,215..216,
                     223,238..241)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239313"
     Site            order(113,147..148,173,175,187)
                     /site_type="other"
                     /note="decamer (pentamer of dimers) interface [polypeptide
                     binding]"
                     /db_xref="CDD:239313"
     Site            order(114,117,193)
                     /site_type="active"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:239313"
     Site            order(117,238)
                     /site_type="active"
                     /note="peroxidatic and resolving cysteines [active]"
                     /db_xref="CDD:239313"
     CDS             1..264
                     /gene="PRDX4"
                     /coded_by="XM_054061348.1:52..846"
                     /db_xref="GeneID:128851625"
ORIGIN      
        1 meagwrwlra wratllllvv lavavgdeaa eepraarqrg deqchyyagg qvypgeaarv
       61 pvsdhslhls qakiskpapy wegtavinge fkelkltdye gkylvfffyp ldftfvcpte
      121 iiafsdriee fraintevva csvdskfthl awintprkqg glgpmkipll sdlthqiakd
      181 ygvyledqgh tlrglfiidd krilrqitmn dlpvgrsvde tlrlvqafqy tdkhgevcpa
      241 gwkpgsetik peeamrvwwp reel
//
LOCUS       XP_053917336            1433 aa            linear   VRT 09-MAR-2023
DEFINITION  interphotoreceptor matrix proteoglycan 2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053917336
VERSION     XP_053917336.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061361.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1433
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1433
                     /product="interphotoreceptor matrix proteoglycan 2 isoform
                     X1"
                     /calculated_mol_wt=158008
     Region          268..372
                     /region_name="SEA"
                     /note="SEA domain; cl02507"
                     /db_xref="CDD:470595"
     Region          1093..1205
                     /region_name="SEA"
                     /note="SEA domain; cl02507"
                     /db_xref="CDD:470595"
     CDS             1..1433
                     /gene="IMPG2"
                     /coded_by="XM_054061361.1:761..5062"
                     /db_xref="GeneID:104054272"
ORIGIN      
        1 mfgftwkmfl clliletikg hlqivaaevy savgggqakd gsptpqlsdw qlanpsqlpe
       61 lkklngvvka eqvnqhlllr rkrsilfpsg vkicpdesve qaianhlkyf rlrvcqetvw
      121 evfktfwdrl pereeyhtwm slceegtmst feigtnfsqs eehrslivkk lsytkeamgs
      181 sctdwscsqg gpehhscsss gtptpasdad vttlrdaaan vpppheisie spvggtvrei
      241 edadttinne ikkqdekvar pvseqmiefs ilidseeysv dlsdptsakh qllseqfisq
      301 iesvfeelpg yksihvldyr speddsgvev hyavtfdgka isnatwdlin lhsnkvedns
      361 fmgiednpta vytisdfrdy iaeilqknal lentslsldp nslqltnvke ilhstpedps
      421 witeypvvpe rpdfddstfl aerpsadest vsntlpfdft kpdstsdseq sndneiwprp
      481 enldseasla peaplssead itslpdglnl edgnqtphlv tapvlahdsv dslewlsasd
      541 sldvsedtel senllpsspp phlvpdesls tddyavplls tptvasssvi etdikeivsa
      601 ekeeislags snadsvprgs veetnfplev hpmeeetdiy lgdrviyddg sgsaidgsgk
      661 emessiwpwe eatlepvfyp gpdswleddn esllirnedi pegmildyil nsgnkldddp
      721 skgenegman tkedfldese ifvfpettaq qvpvlqteep ssvepstqte tfgmhdssfv
      781 kpslalepsv dhsfvdiptg eapvslyntg lpveesvltp tgtismgqle essvgqniis
      841 eatehqnedg tvvgelftvg qsdvteaati gyldtssset iltadlsmvt sastvypdds
      901 teeqhtldss lasqdttgtg vknladvwpt nralensldq tvpsvmliat qvstvgpsvi
      961 dettvpegfa vqggtdhdmq vskssssvtn syvtmsvpts tvelpslllp vesttsspma
     1021 sstilgdett rvldvsvdld hvstihfspe lteegrsmte shmeltthvq stemasvawa
     1081 thenqnsspv psralvvffs lrvtnmmfse dlfnknspey kaleqrflel lvpylqsnlt
     1141 gfqnleilnf rngsivvnsr mkfakpvprn vtnavymile dfcntayhtm nlaidkysld
     1201 vesgeqadpc kfqacnefse clvnrwsgea ecvcnpgyls idglpcnsic dlqpnfclnd
     1261 gkcdispgqg aicrcrvgen wwyrgehcee yvseplvvgi aiasvagfll vasaviffla
     1321 rtlrdqytks dtedsqgqgd slssienavk ynpmyesdtt gyshyyrryp qltsysstsa
     1381 etsteyssee irhiyensel tkeeiqdrir iielyakdrq faefvrqhqm kll
//
LOCUS       XP_053917345            1432 aa            linear   VRT 09-MAR-2023
DEFINITION  interphotoreceptor matrix proteoglycan 2 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053917345
VERSION     XP_053917345.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061370.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1432
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1432
                     /product="interphotoreceptor matrix proteoglycan 2 isoform
                     X2"
                     /calculated_mol_wt=157921
     Region          267..371
                     /region_name="SEA"
                     /note="SEA domain; cl02507"
                     /db_xref="CDD:470595"
     Region          1092..1204
                     /region_name="SEA"
                     /note="SEA domain; cl02507"
                     /db_xref="CDD:470595"
     CDS             1..1432
                     /gene="IMPG2"
                     /coded_by="XM_054061370.1:760..5058"
                     /db_xref="GeneID:104054272"
ORIGIN      
        1 mfgftwkmfl clliletikg hlqivaaevy savgggqakd gsptpqlsdw qlanpsqlpe
       61 lkklngvvka eqvnqhlllr rkrsilfpsg vkicpdesve qaianhlkyf rlrvcqetvw
      121 evfktfwdrl pereeyhtwm slceegtmst feigtnfsqs eehrslivkk lsytkeamgs
      181 sctdwscsqg gpehhscssg tptpasdadv ttlrdaaanv pppheisies pvggtvreie
      241 dadttinnei kkqdekvarp vseqmiefsi lidseeysvd lsdptsakhq llseqfisqi
      301 esvfeelpgy ksihvldyrs peddsgvevh yavtfdgkai snatwdlinl hsnkvednsf
      361 mgiednptav ytisdfrdyi aeilqknall entslsldpn slqltnvkei lhstpedpsw
      421 iteypvvper pdfddstfla erpsadestv sntlpfdftk pdstsdseqs ndneiwprpe
      481 nldseaslap eaplsseadi tslpdglnle dgnqtphlvt apvlahdsvd slewlsasds
      541 ldvsedtels enllpssppp hlvpdeslst ddyavpllst ptvasssvie tdikeivsae
      601 keeislagss nadsvprgsv eetnfplevh pmeeetdiyl gdrviyddgs gsaidgsgke
      661 messiwpwee atlepvfypg pdswleddne sllirnedip egmildyiln sgnkldddps
      721 kgenegmant kedfldesei fvfpettaqq vpvlqteeps svepstqtet fgmhdssfvk
      781 pslalepsvd hsfvdiptge apvslyntgl pveesvltpt gtismgqlee ssvgqniise
      841 atehqnedgt vvgelftvgq sdvteaatig yldtssseti ltadlsmvts astvypddst
      901 eeqhtldssl asqdttgtgv knladvwptn ralensldqt vpsvmliatq vstvgpsvid
      961 ettvpegfav qggtdhdmqv skssssvtns yvtmsvptst velpslllpv esttsspmas
     1021 stilgdettr vldvsvdldh vstihfspel teegrsmtes hmeltthvqs temasvawat
     1081 henqnsspvp sralvvffsl rvtnmmfsed lfnknspeyk aleqrflell vpylqsnltg
     1141 fqnleilnfr ngsivvnsrm kfakpvprnv tnavymiled fcntayhtmn laidkysldv
     1201 esgeqadpck fqacnefsec lvnrwsgeae cvcnpgylsi dglpcnsicd lqpnfclndg
     1261 kcdispgqga icrcrvgenw wyrgehceey vseplvvgia iasvagfllv asavifflar
     1321 tlrdqytksd tedsqgqgds lssienavky npmyesdttg yshyyrrypq ltsysstsae
     1381 tsteysseei rhiyenselt keeiqdriri ielyakdrqf aefvrqhqmk ll
//
LOCUS       XP_053917353            1432 aa            linear   VRT 09-MAR-2023
DEFINITION  interphotoreceptor matrix proteoglycan 2 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053917353
VERSION     XP_053917353.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061378.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1432
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1432
                     /product="interphotoreceptor matrix proteoglycan 2 isoform
                     X3"
                     /calculated_mol_wt=157937
     Region          267..371
                     /region_name="SEA"
                     /note="SEA domain; cl02507"
                     /db_xref="CDD:470595"
     Region          1092..1204
                     /region_name="SEA"
                     /note="SEA domain; cl02507"
                     /db_xref="CDD:470595"
     CDS             1..1432
                     /gene="IMPG2"
                     /coded_by="XM_054061378.1:761..5059"
                     /db_xref="GeneID:104054272"
ORIGIN      
        1 mfgftwkmfl clliletikg hlqivaevys avgggqakdg sptpqlsdwq lanpsqlpel
       61 kklngvvkae qvnqhlllrr krsilfpsgv kicpdesveq aianhlkyfr lrvcqetvwe
      121 vfktfwdrlp ereeyhtwms lceegtmstf eigtnfsqse ehrslivkkl sytkeamgss
      181 ctdwscsqgg pehhscsssg tptpasdadv ttlrdaaanv pppheisies pvggtvreie
      241 dadttinnei kkqdekvarp vseqmiefsi lidseeysvd lsdptsakhq llseqfisqi
      301 esvfeelpgy ksihvldyrs peddsgvevh yavtfdgkai snatwdlinl hsnkvednsf
      361 mgiednptav ytisdfrdyi aeilqknall entslsldpn slqltnvkei lhstpedpsw
      421 iteypvvper pdfddstfla erpsadestv sntlpfdftk pdstsdseqs ndneiwprpe
      481 nldseaslap eaplsseadi tslpdglnle dgnqtphlvt apvlahdsvd slewlsasds
      541 ldvsedtels enllpssppp hlvpdeslst ddyavpllst ptvasssvie tdikeivsae
      601 keeislagss nadsvprgsv eetnfplevh pmeeetdiyl gdrviyddgs gsaidgsgke
      661 messiwpwee atlepvfypg pdswleddne sllirnedip egmildyiln sgnkldddps
      721 kgenegmant kedfldesei fvfpettaqq vpvlqteeps svepstqtet fgmhdssfvk
      781 pslalepsvd hsfvdiptge apvslyntgl pveesvltpt gtismgqlee ssvgqniise
      841 atehqnedgt vvgelftvgq sdvteaatig yldtssseti ltadlsmvts astvypddst
      901 eeqhtldssl asqdttgtgv knladvwptn ralensldqt vpsvmliatq vstvgpsvid
      961 ettvpegfav qggtdhdmqv skssssvtns yvtmsvptst velpslllpv esttsspmas
     1021 stilgdettr vldvsvdldh vstihfspel teegrsmtes hmeltthvqs temasvawat
     1081 henqnsspvp sralvvffsl rvtnmmfsed lfnknspeyk aleqrflell vpylqsnltg
     1141 fqnleilnfr ngsivvnsrm kfakpvprnv tnavymiled fcntayhtmn laidkysldv
     1201 esgeqadpck fqacnefsec lvnrwsgeae cvcnpgylsi dglpcnsicd lqpnfclndg
     1261 kcdispgqga icrcrvgenw wyrgehceey vseplvvgia iasvagfllv asavifflar
     1321 tlrdqytksd tedsqgqgds lssienavky npmyesdttg yshyyrrypq ltsysstsae
     1381 tsteysseei rhiyenselt keeiqdriri ielyakdrqf aefvrqhqmk ll
//
LOCUS       XP_053917360            1423 aa            linear   VRT 09-MAR-2023
DEFINITION  interphotoreceptor matrix proteoglycan 2 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053917360
VERSION     XP_053917360.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061385.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1423
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1423
                     /product="interphotoreceptor matrix proteoglycan 2 isoform
                     X4"
                     /calculated_mol_wt=156988
     Region          258..362
                     /region_name="SEA"
                     /note="SEA domain; cl02507"
                     /db_xref="CDD:470595"
     Region          1083..1195
                     /region_name="SEA"
                     /note="SEA domain; cl02507"
                     /db_xref="CDD:470595"
     CDS             1..1423
                     /gene="IMPG2"
                     /coded_by="XM_054061385.1:760..5031"
                     /db_xref="GeneID:104054272"
ORIGIN      
        1 mfgftwkmfl clliletikg hlqivaaevy savgggqakd gsptpqlsdw qlanpsqlpe
       61 lkklngvvka eqvnqhlllr rkrsilfpsg vkicpdesve qaianhlkyf rlrvcqetvw
      121 evfktfwdrl pereeyhtwm slceegtmst feigtnfsqs eehrslivkk lsytkeamgs
      181 sctdwscsss gtptpasdad vttlrdaaan vpppheisie spvggtvrei edadttinne
      241 ikkqdekvar pvseqmiefs ilidseeysv dlsdptsakh qllseqfisq iesvfeelpg
      301 yksihvldyr speddsgvev hyavtfdgka isnatwdlin lhsnkvedns fmgiednpta
      361 vytisdfrdy iaeilqknal lentslsldp nslqltnvke ilhstpedps witeypvvpe
      421 rpdfddstfl aerpsadest vsntlpfdft kpdstsdseq sndneiwprp enldseasla
      481 peaplssead itslpdglnl edgnqtphlv tapvlahdsv dslewlsasd sldvsedtel
      541 senllpsspp phlvpdesls tddyavplls tptvasssvi etdikeivsa ekeeislags
      601 snadsvprgs veetnfplev hpmeeetdiy lgdrviyddg sgsaidgsgk emessiwpwe
      661 eatlepvfyp gpdswleddn esllirnedi pegmildyil nsgnkldddp skgenegman
      721 tkedfldese ifvfpettaq qvpvlqteep ssvepstqte tfgmhdssfv kpslalepsv
      781 dhsfvdiptg eapvslyntg lpveesvltp tgtismgqle essvgqniis eatehqnedg
      841 tvvgelftvg qsdvteaati gyldtssset iltadlsmvt sastvypdds teeqhtldss
      901 lasqdttgtg vknladvwpt nralensldq tvpsvmliat qvstvgpsvi dettvpegfa
      961 vqggtdhdmq vskssssvtn syvtmsvpts tvelpslllp vesttsspma sstilgdett
     1021 rvldvsvdld hvstihfspe lteegrsmte shmeltthvq stemasvawa thenqnsspv
     1081 psralvvffs lrvtnmmfse dlfnknspey kaleqrflel lvpylqsnlt gfqnleilnf
     1141 rngsivvnsr mkfakpvprn vtnavymile dfcntayhtm nlaidkysld vesgeqadpc
     1201 kfqacnefse clvnrwsgea ecvcnpgyls idglpcnsic dlqpnfclnd gkcdispgqg
     1261 aicrcrvgen wwyrgehcee yvseplvvgi aiasvagfll vasaviffla rtlrdqytks
     1321 dtedsqgqgd slssienavk ynpmyesdtt gyshyyrryp qltsysstsa etsteyssee
     1381 irhiyensel tkeeiqdrir iielyakdrq faefvrqhqm kll
//
LOCUS       XP_053917369            1422 aa            linear   VRT 09-MAR-2023
DEFINITION  interphotoreceptor matrix proteoglycan 2 isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053917369
VERSION     XP_053917369.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061394.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1422
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1422
                     /product="interphotoreceptor matrix proteoglycan 2 isoform
                     X5"
                     /calculated_mol_wt=156901
     Region          257..361
                     /region_name="SEA"
                     /note="SEA domain; cl02507"
                     /db_xref="CDD:470595"
     Region          1082..1194
                     /region_name="SEA"
                     /note="SEA domain; cl02507"
                     /db_xref="CDD:470595"
     CDS             1..1422
                     /gene="IMPG2"
                     /coded_by="XM_054061394.1:760..5028"
                     /db_xref="GeneID:104054272"
ORIGIN      
        1 mfgftwkmfl clliletikg hlqivaaevy savgggqakd gsptpqlsdw qlanpsqlpe
       61 lkklngvvka eqvnqhlllr rkrsilfpsg vkicpdesve qaianhlkyf rlrvcqetvw
      121 evfktfwdrl pereeyhtwm slceegtmst feigtnfsqs eehrslivkk lsytkeamgs
      181 sctdwscssg tptpasdadv ttlrdaaanv pppheisies pvggtvreie dadttinnei
      241 kkqdekvarp vseqmiefsi lidseeysvd lsdptsakhq llseqfisqi esvfeelpgy
      301 ksihvldyrs peddsgvevh yavtfdgkai snatwdlinl hsnkvednsf mgiednptav
      361 ytisdfrdyi aeilqknall entslsldpn slqltnvkei lhstpedpsw iteypvvper
      421 pdfddstfla erpsadestv sntlpfdftk pdstsdseqs ndneiwprpe nldseaslap
      481 eaplsseadi tslpdglnle dgnqtphlvt apvlahdsvd slewlsasds ldvsedtels
      541 enllpssppp hlvpdeslst ddyavpllst ptvasssvie tdikeivsae keeislagss
      601 nadsvprgsv eetnfplevh pmeeetdiyl gdrviyddgs gsaidgsgke messiwpwee
      661 atlepvfypg pdswleddne sllirnedip egmildyiln sgnkldddps kgenegmant
      721 kedfldesei fvfpettaqq vpvlqteeps svepstqtet fgmhdssfvk pslalepsvd
      781 hsfvdiptge apvslyntgl pveesvltpt gtismgqlee ssvgqniise atehqnedgt
      841 vvgelftvgq sdvteaatig yldtssseti ltadlsmvts astvypddst eeqhtldssl
      901 asqdttgtgv knladvwptn ralensldqt vpsvmliatq vstvgpsvid ettvpegfav
      961 qggtdhdmqv skssssvtns yvtmsvptst velpslllpv esttsspmas stilgdettr
     1021 vldvsvdldh vstihfspel teegrsmtes hmeltthvqs temasvawat henqnsspvp
     1081 sralvvffsl rvtnmmfsed lfnknspeyk aleqrflell vpylqsnltg fqnleilnfr
     1141 ngsivvnsrm kfakpvprnv tnavymiled fcntayhtmn laidkysldv esgeqadpck
     1201 fqacnefsec lvnrwsgeae cvcnpgylsi dglpcnsicd lqpnfclndg kcdispgqga
     1261 icrcrvgenw wyrgehceey vseplvvgia iasvagfllv asavifflar tlrdqytksd
     1321 tedsqgqgds lssienavky npmyesdttg yshyyrrypq ltsysstsae tsteysseei
     1381 rhiyenselt keeiqdriri ielyakdrqf aefvrqhqmk ll
//
LOCUS       XP_053917388            1059 aa            linear   VRT 09-MAR-2023
DEFINITION  sentrin-specific protease 7 isoform X1 [Cuculus canorus].
ACCESSION   XP_053917388
VERSION     XP_053917388.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061413.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1059
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1059
                     /product="sentrin-specific protease 7 isoform X1"
                     /calculated_mol_wt=119701
     Region          757..1020
                     /region_name="Peptidase_C48"
                     /note="Ulp1 protease family, C-terminal catalytic domain;
                     cl23802"
                     /db_xref="CDD:420019"
     CDS             1..1059
                     /gene="SENP7"
                     /coded_by="XM_054061413.1:103..3282"
                     /db_xref="GeneID:104054265"
ORIGIN      
        1 mdgrtssssh vsfrlakkkt ntktedvqvq splarlpdsh hldyplkewk lstnnrepst
       61 kgkrqkdrkr hssndeesig qpkviltnvl rtkigrkytq aqlktganfs dagklqsdqp
      121 psssaaslki wqilnpalqs pflserqpav iltnvlttki grkyidshii idanlsdagk
      181 lqsgqlpsss laslqtceil ssdressfls ersehclrkt dgglckltka skepeknnvf
      241 tfrrrelekk enkncyelek rsrnmksttl dqkesgssds ekrkrrssgh isddcnahip
      301 eksvllskeq rlsstrspgh rttcedeesh ksnavlvldc vpqlsegdnk etsthshlrp
      361 ahsctekpgl lsplrnlsdk qlsatsgdmi ssrvstirtl kidtsqylsk lrsricrgnq
      421 qlvsvdpivl ssddedglse pkctellqgs itdnrdqqsd icvlaeqled kmerhteqfl
      481 tesvedkcpi sltsgstprk qmnsglnief dslyigkfkw lstgparfst kyitipfqva
      541 lnkninltvd tldlrrfglw rsdcgcsstm iiflwlsvdy vekietqlgk lsiskpskss
      601 efvflelsqp lteseegrlt eliavvskkn rapdlsdfls lkqalpflkd lspeetsfms
      661 yhkdllnqck pkentssahe pavqqeskpk vvrpsyalan kqssgcysis lssalneewk
      721 evgetgavkn livyppppak rglgvtredl ycleygefln dviidfylky lllekapkdl
      781 adrthifssf fykcltrtek nsegdlkvsv aqrrhirvrt wtrhinifsk dyifvpvnee
      841 ahwyiavicf pwleeavyee cphqnslhhq pqqsplqseg enartgsvla fpgnckdeee
      901 idanrilfsk ggneiaasas vldsgiskis lsnskrqick rpcilifdsl kagsvqktvq
      961 vlreylemew eakrkthref nkstmidlcp rvpkqdnssd cgiyllqyve sffqnpivnf
     1021 eeplhlekwf prqlirskre eirdlilqlh fqqhsgsss
//
LOCUS       XP_009553533            1058 aa            linear   VRT 09-MAR-2023
DEFINITION  sentrin-specific protease 7 isoform X2 [Cuculus canorus].
ACCESSION   XP_009553533
VERSION     XP_009553533.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009555238.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009553533.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1058
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1058
                     /product="sentrin-specific protease 7 isoform X2"
                     /calculated_mol_wt=119573
     Region          756..1019
                     /region_name="Peptidase_C48"
                     /note="Ulp1 protease family, C-terminal catalytic domain;
                     cl23802"
                     /db_xref="CDD:420019"
     CDS             1..1058
                     /gene="SENP7"
                     /coded_by="XM_009555238.2:103..3279"
                     /db_xref="GeneID:104054265"
ORIGIN      
        1 mdgrtssssh vsfrlakkkt ntktedvqvq splarlpdsh hldyplkewk lstnnrepst
       61 kgkrqkdrkr hssndeesig qpkviltnvl rtkigrkytq aqlktganfs dagklqsdqp
      121 psssaaslki wqilnpalqs pflserqpav iltnvlttki grkyidshii idanlsdagk
      181 lqsgqlpsss laslqtceil ssdressfls ersehclrkt dgglckltka skepeknnvf
      241 tfrrrelekk enkncyelek rsrnmksttl dqkesgssds ekrkrrssgh isddcnahip
      301 eksvllskeq rlsstrspgh rttcedeesh ksnavlvldc vpqlsegdnk etsthshlrp
      361 ahsctekpgl lsplrnlsdk qlsatsgdmi ssrvstirtl kidtsqylsk lrsricrgnq
      421 qlvsvdpivl ssddedglse pkctellqgs itdnrdqqsd icvlaeqled kmerhteqfl
      481 tesvedkcpi sltsgstprk qmnsglnief dslyigkfkw lstgparfst kyitipfqva
      541 lnkninltvd tldlrrfglw rsdcgcsstm iiflwlsvdy vekietqlgk lsiskpskss
      601 efvflelsqp lteseegrlt eliavvskkn rapdlsdfls lkqalpflkd lspeetsfms
      661 yhkdllnqck pkentssahe pavqeskpkv vrpsyalank qssgcysisl ssalneewke
      721 vgetgavknl ivyppppakr glgvtredly cleygeflnd viidfylkyl llekapkdla
      781 drthifssff ykcltrtekn segdlkvsva qrrhirvrtw trhinifskd yifvpvneea
      841 hwyiavicfp wleeavyeec phqnslhhqp qqsplqsege nartgsvlaf pgnckdeeei
      901 danrilfskg gneiaasasv ldsgiskisl snskrqickr pcilifdslk agsvqktvqv
      961 lreylemewe akrkthrefn kstmidlcpr vpkqdnssdc giyllqyves ffqnpivnfe
     1021 eplhlekwfp rqlirskree irdlilqlhf qqhsgsss
//
LOCUS       XP_053917403             868 aa            linear   VRT 09-MAR-2023
DEFINITION  sentrin-specific protease 7 isoform X3 [Cuculus canorus].
ACCESSION   XP_053917403
VERSION     XP_053917403.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061428.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..868
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..868
                     /product="sentrin-specific protease 7 isoform X3"
                     /calculated_mol_wt=98696
     Region          566..829
                     /region_name="Peptidase_C48"
                     /note="Ulp1 protease family, C-terminal catalytic domain;
                     cl23802"
                     /db_xref="CDD:420019"
     CDS             1..868
                     /gene="SENP7"
                     /coded_by="XM_054061428.1:16..2622"
                     /db_xref="GeneID:104054265"
ORIGIN      
        1 milqstdtal knrrgsqrsw rsehclrktd gglckltkas kepeknnvft frrrelekke
       61 nkncyelekr srnmksttld qkesgssdse krkrrssghi sddcnahipe ksvllskeqr
      121 lsstrspghr ttcedeeshk snavlvldcv pqlsegdnke tsthshlrpa hsctekpgll
      181 splrnlsdkq lsatsgdmis srvstirtlk idtsqylskl rsricrgnqq lvsvdpivls
      241 sddedglsep kctellqgsi tdnrdqqsdi cvlaeqledk merhteqflt esvedkcpis
      301 ltsgstprkq mnsglniefd slyigkfkwl stgparfstk yitipfqval nkninltvdt
      361 ldlrrfglwr sdcgcsstmi iflwlsvdyv ekietqlgkl siskpsksse fvflelsqpl
      421 teseegrlte liavvskknr apdlsdflsl kqalpflkdl speetsfmsy hkdllnqckp
      481 kentssahep avqqeskpkv vrpsyalank qssgcysisl ssalneewke vgetgavknl
      541 ivyppppakr glgvtredly cleygeflnd viidfylkyl llekapkdla drthifssff
      601 ykcltrtekn segdlkvsva qrrhirvrtw trhinifskd yifvpvneea hwyiavicfp
      661 wleeavyeec phqnslhhqp qqsplqsege nartgsvlaf pgnckdeeei danrilfskg
      721 gneiaasasv ldsgiskisl snskrqickr pcilifdslk agsvqktvqv lreylemewe
      781 akrkthrefn kstmidlcpr vpkqdnssdc giyllqyves ffqnpivnfe eplhlekwfp
      841 rqlirskree irdlilqlhf qqhsgsss
//
LOCUS       XP_053917418             550 aa            linear   VRT 09-MAR-2023
DEFINITION  protein C12orf4 homolog isoform X1 [Cuculus canorus].
ACCESSION   XP_053917418
VERSION     XP_053917418.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061443.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..550
                     /product="protein C12orf4 homolog isoform X1"
                     /calculated_mol_wt=63355
     Region          41..544
                     /region_name="DUF2362"
                     /note="Uncharacterized conserved protein (DUF2362);
                     pfam10154"
                     /db_xref="CDD:431095"
     CDS             1..550
                     /gene="C1H12orf4"
                     /coded_by="XM_054061443.1:284..1936"
                     /db_xref="GeneID:104066626"
ORIGIN      
        1 mkpnkgktct rerdyvykfn agnqhfvltv plkfpvqenv shlhgrlmll hnlpcfiend
       61 lkqslnkfie eetikdydke aemaleavks gkvdinhlae twakaykett leyakpeets
      121 wdedfadvyh dlihspasem llnlehnyfv siseliserd velkklrerq gaemdkvmqe
      181 lgksltdqdv nslaaqhfes qqdlenkwtn elkqstaiqk qeyqewvikl hqdlqnpnns
      241 svsdeikvqp sqlresvegn griyeeqrll eesftihlga qlktmhnlrl lradmldfck
      301 hkrnhrsgvk lhrlqtamsl ysaslcglvl lvdnrissys gikrdfatvc qectdfhfpg
      361 iqeqleivqk vvlkaraqrs skskrrhenk ssgnedkskn iernqsnilp gefyitrhsn
      421 lseihvafhl cvddnvrsgn itardpaimg lrnilkvcct hdittisipl llvhdmseem
      481 tipwclkrae lvfkcikgfm memaswdggi srtvqflvpq tiseemfyql snmlpqifrv
      541 sstltltskh
//
LOCUS       XP_053917426             550 aa            linear   VRT 09-MAR-2023
DEFINITION  protein C12orf4 homolog isoform X1 [Cuculus canorus].
ACCESSION   XP_053917426
VERSION     XP_053917426.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061451.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..550
                     /product="protein C12orf4 homolog isoform X1"
                     /calculated_mol_wt=63355
     Region          41..544
                     /region_name="DUF2362"
                     /note="Uncharacterized conserved protein (DUF2362);
                     pfam10154"
                     /db_xref="CDD:431095"
     CDS             1..550
                     /gene="C1H12orf4"
                     /coded_by="XM_054061451.1:126..1778"
                     /db_xref="GeneID:104066626"
ORIGIN      
        1 mkpnkgktct rerdyvykfn agnqhfvltv plkfpvqenv shlhgrlmll hnlpcfiend
       61 lkqslnkfie eetikdydke aemaleavks gkvdinhlae twakaykett leyakpeets
      121 wdedfadvyh dlihspasem llnlehnyfv siseliserd velkklrerq gaemdkvmqe
      181 lgksltdqdv nslaaqhfes qqdlenkwtn elkqstaiqk qeyqewvikl hqdlqnpnns
      241 svsdeikvqp sqlresvegn griyeeqrll eesftihlga qlktmhnlrl lradmldfck
      301 hkrnhrsgvk lhrlqtamsl ysaslcglvl lvdnrissys gikrdfatvc qectdfhfpg
      361 iqeqleivqk vvlkaraqrs skskrrhenk ssgnedkskn iernqsnilp gefyitrhsn
      421 lseihvafhl cvddnvrsgn itardpaimg lrnilkvcct hdittisipl llvhdmseem
      481 tipwclkrae lvfkcikgfm memaswdggi srtvqflvpq tiseemfyql snmlpqifrv
      541 sstltltskh
//
LOCUS       XP_053917433             550 aa            linear   VRT 09-MAR-2023
DEFINITION  protein C12orf4 homolog isoform X1 [Cuculus canorus].
ACCESSION   XP_053917433
VERSION     XP_053917433.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061458.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..550
                     /product="protein C12orf4 homolog isoform X1"
                     /calculated_mol_wt=63355
     Region          41..544
                     /region_name="DUF2362"
                     /note="Uncharacterized conserved protein (DUF2362);
                     pfam10154"
                     /db_xref="CDD:431095"
     CDS             1..550
                     /gene="C1H12orf4"
                     /coded_by="XM_054061458.1:37..1689"
                     /db_xref="GeneID:104066626"
ORIGIN      
        1 mkpnkgktct rerdyvykfn agnqhfvltv plkfpvqenv shlhgrlmll hnlpcfiend
       61 lkqslnkfie eetikdydke aemaleavks gkvdinhlae twakaykett leyakpeets
      121 wdedfadvyh dlihspasem llnlehnyfv siseliserd velkklrerq gaemdkvmqe
      181 lgksltdqdv nslaaqhfes qqdlenkwtn elkqstaiqk qeyqewvikl hqdlqnpnns
      241 svsdeikvqp sqlresvegn griyeeqrll eesftihlga qlktmhnlrl lradmldfck
      301 hkrnhrsgvk lhrlqtamsl ysaslcglvl lvdnrissys gikrdfatvc qectdfhfpg
      361 iqeqleivqk vvlkaraqrs skskrrhenk ssgnedkskn iernqsnilp gefyitrhsn
      421 lseihvafhl cvddnvrsgn itardpaimg lrnilkvcct hdittisipl llvhdmseem
      481 tipwclkrae lvfkcikgfm memaswdggi srtvqflvpq tiseemfyql snmlpqifrv
      541 sstltltskh
//
LOCUS       XP_053917440             543 aa            linear   VRT 09-MAR-2023
DEFINITION  protein C12orf4 homolog isoform X2 [Cuculus canorus].
ACCESSION   XP_053917440
VERSION     XP_053917440.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061465.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..543
                     /product="protein C12orf4 homolog isoform X2"
                     /calculated_mol_wt=62475
     Region          41..537
                     /region_name="DUF2362"
                     /note="Uncharacterized conserved protein (DUF2362);
                     pfam10154"
                     /db_xref="CDD:431095"
     CDS             1..543
                     /gene="C1H12orf4"
                     /coded_by="XM_054061465.1:284..1915"
                     /db_xref="GeneID:104066626"
ORIGIN      
        1 mkpnkgktct rerdyvykfn agnqhfvltv plkfpvqenv shlhgrlmll hnlpcfiend
       61 lkqslnkfie eetikdydke aemaleavks gkvdinhlae twakaykett leyakpeets
      121 wdedfadvyh dlihspasem llnlehnyfv siseliserd velkklrerq gaemdkvmqe
      181 lgksltdqdv nslaaqhfes qqdlenkwtn elkqstaiqk qeyqewvikl hqdlqnpnns
      241 svsdeikvqp sqlresvegn griyeeqrll eesftihlga qlktmhnlrl lradmldfck
      301 hkrnhrsgvk lhrlqtamsl ysaslcglvl lvdnrissys gikrdfatvc qectdfhfpg
      361 iqeqleivqk vvlkaraqrs knkssgnedk skniernqsn ilpgefyitr hsnlseihva
      421 fhlcvddnvr sgnitardpa imglrnilkv ccthdittis iplllvhdms eemtipwclk
      481 raelvfkcik gfmmemaswd ggisrtvqfl vpqtiseemf yqlsnmlpqi frvsstltlt
      541 skh
//
LOCUS       XP_053917451             550 aa            linear   VRT 09-MAR-2023
DEFINITION  protein C12orf4 homolog isoform X1 [Cuculus canorus].
ACCESSION   XP_053917451
VERSION     XP_053917451.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061476.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..550
                     /product="protein C12orf4 homolog isoform X1"
                     /calculated_mol_wt=63355
     Region          41..544
                     /region_name="DUF2362"
                     /note="Uncharacterized conserved protein (DUF2362);
                     pfam10154"
                     /db_xref="CDD:431095"
     CDS             1..550
                     /gene="C1H12orf4"
                     /coded_by="XM_054061476.1:191..1843"
                     /db_xref="GeneID:104066626"
ORIGIN      
        1 mkpnkgktct rerdyvykfn agnqhfvltv plkfpvqenv shlhgrlmll hnlpcfiend
       61 lkqslnkfie eetikdydke aemaleavks gkvdinhlae twakaykett leyakpeets
      121 wdedfadvyh dlihspasem llnlehnyfv siseliserd velkklrerq gaemdkvmqe
      181 lgksltdqdv nslaaqhfes qqdlenkwtn elkqstaiqk qeyqewvikl hqdlqnpnns
      241 svsdeikvqp sqlresvegn griyeeqrll eesftihlga qlktmhnlrl lradmldfck
      301 hkrnhrsgvk lhrlqtamsl ysaslcglvl lvdnrissys gikrdfatvc qectdfhfpg
      361 iqeqleivqk vvlkaraqrs skskrrhenk ssgnedkskn iernqsnilp gefyitrhsn
      421 lseihvafhl cvddnvrsgn itardpaimg lrnilkvcct hdittisipl llvhdmseem
      481 tipwclkrae lvfkcikgfm memaswdggi srtvqflvpq tiseemfyql snmlpqifrv
      541 sstltltskh
//
LOCUS       XP_053917463             326 aa            linear   VRT 09-MAR-2023
DEFINITION  RAD51-associated protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053917463
VERSION     XP_053917463.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061488.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..326
                     /product="RAD51-associated protein 1 isoform X1"
                     /calculated_mol_wt=35996
     Region          285..323
                     /region_name="RAD51_interact"
                     /note="RAD51 interacting motif; pfam15696"
                     /db_xref="CDD:464808"
     CDS             1..326
                     /gene="RAD51AP1"
                     /coded_by="XM_054061488.1:111..1091"
                     /db_xref="GeneID:104066638"
ORIGIN      
        1 marpvrrnkk ivdysqfgdl edddedfaci aapsskksrt qlkepkkekk ekqkkpqkev
       61 tlsqkqtask rislddklyq rslevalals vkenaanile vqnseqqdkn iesedvprrp
      121 lfsncsvdse llglnqvmdd evpkddcgqk tasskvpahq kkllsvdsdd gehasdfepe
      181 svpseeseed sdysegdned famekkkakr ikkktkakmp terekktpks kinttvspvv
      241 spspmteqks eptqktisss sgpvgrslht sspvidkkpk wippaasgss nnsmkyvsvk
      301 sptqclrlgl srlarvkplh psaass
//
LOCUS       XP_053917469             322 aa            linear   VRT 09-MAR-2023
DEFINITION  RAD51-associated protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053917469
VERSION     XP_053917469.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061494.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..322
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..322
                     /product="RAD51-associated protein 1 isoform X2"
                     /calculated_mol_wt=35613
     Region          281..319
                     /region_name="RAD51_interact"
                     /note="RAD51 interacting motif; pfam15696"
                     /db_xref="CDD:464808"
     CDS             1..322
                     /gene="RAD51AP1"
                     /coded_by="XM_054061494.1:111..1079"
                     /db_xref="GeneID:104066638"
ORIGIN      
        1 marpvrrnkk ivdysqfgdl edddedfaci aapsskksrt qlkepkkekk ekqkkpqkev
       61 tlsqkqtask rislddklyq rslevalals vkenaanile vqnseqqdkn iesedvprrp
      121 lfsncsvdse llglnqvmdd evpkddcgqk tasskvpahq kkllsvdsdd gehasdfepe
      181 svpseeseed sdysegdned famekkkakr ikkktkakmp terekktpks kinttvspsp
      241 mteqkseptq ktissssgpv grslhtsspv idkkpkwipp aasgssnnsm kyvsvksptq
      301 clrlglsrla rvkplhpsaa ss
//
LOCUS       XP_053917475             315 aa            linear   VRT 09-MAR-2023
DEFINITION  RAD51-associated protein 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053917475
VERSION     XP_053917475.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061500.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..315
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..315
                     /product="RAD51-associated protein 1 isoform X3"
                     /calculated_mol_wt=34913
     Region          274..312
                     /region_name="RAD51_interact"
                     /note="RAD51 interacting motif; pfam15696"
                     /db_xref="CDD:464808"
     CDS             1..315
                     /gene="RAD51AP1"
                     /coded_by="XM_054061500.1:101..1048"
                     /db_xref="GeneID:104066638"
ORIGIN      
        1 marpvrrnkk ivdysqfgdl edddedfaci aapsskksrt qlkepkkekk ekqkkpqkev
       61 tlsqkqtask rislddklyq rslevalals vkenaanile vqnseqqdkn iesedvprrp
      121 lfsncsvdse llglnqvmdd evpkddcgqk tasskvpahq kkllsvdsdd gehasdfepe
      181 svpseeseed sdysegdned famekkkakr ikkktkakmp terekktpks kintteqkse
      241 ptqktissss gpvgrslhts spvidkkpkw ippaasgssn nsmkyvsvks ptqclrlgls
      301 rlarvkplhp saass
//
LOCUS       XP_053917488             499 aa            linear   VRT 09-MAR-2023
DEFINITION  nicotinamide phosphoribosyltransferase isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053917488
VERSION     XP_053917488.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061513.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..499
                     /product="nicotinamide phosphoribosyltransferase isoform
                     X1"
                     /calculated_mol_wt=56172
     Region          13..435
                     /region_name="PBEF_like"
                     /note="pre-B-cell colony-enhancing factor (PBEF)-like. The
                     mammalian members of this group of nicotinate
                     phosphoribosyltransferases (NAPRTases) were originally
                     identified as genes whose expression is upregulated upon
                     activation in lymphoid cells. In general; cd01569"
                     /db_xref="CDD:238803"
     Site            order(196..198,221..222,314,353..354,388,390..391,394)
                     /site_type="active"
                     /db_xref="CDD:238803"
     CDS             1..499
                     /gene="NAMPT"
                     /coded_by="XM_054061513.1:86..1585"
                     /db_xref="GeneID:104056094"
ORIGIN      
        1 mecaaagaef nillatdsyk vthykqyppn tskvysyfec rekktenskl rkvkyeetvf
       61 yglqyilnky lkgkvvtkek ikeakevyre hfqddvfnek gwnyilekyd ghlpieikav
      121 pegsviprgn vlftventdp ecywltnwie tilvqswypi tvatnsreqk kilakyllet
      181 sgslegleyk lhdfgyrgvs sqetagigas ahlvnfkgtd tvagialikk yygtkdpvpg
      241 ysvpaaehst itawgkdhek dafehivtqf ssvpvsvvsd sydiynacek iwgddlrhii
      301 earspeapli irpdsgnpld tvlkvleilg kkfpitensk gykllppylr viqgdgvdin
      361 tlqegmlveq ivegmkknkw sieniafgsg gallqkltrd llncsfkcsy vvtnglgvnv
      421 fkdpvadpnk rskkgrlslh rtptgdyvtl eegkgdleey gqdllhtvfk ngkvtksysf
      481 devrqnarlk nselevash
//
LOCUS       XP_053917497             493 aa            linear   VRT 09-MAR-2023
DEFINITION  nicotinamide phosphoribosyltransferase isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053917497
VERSION     XP_053917497.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061522.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..493
                     /product="nicotinamide phosphoribosyltransferase isoform
                     X2"
                     /calculated_mol_wt=55514
     Region          13..429
                     /region_name="PBEF_like"
                     /note="pre-B-cell colony-enhancing factor (PBEF)-like. The
                     mammalian members of this group of nicotinate
                     phosphoribosyltransferases (NAPRTases) were originally
                     identified as genes whose expression is upregulated upon
                     activation in lymphoid cells. In general; cd01569"
                     /db_xref="CDD:238803"
     Site            order(196..198,221..222,314,353..354,382,384..385,388)
                     /site_type="active"
                     /db_xref="CDD:238803"
     CDS             1..493
                     /gene="NAMPT"
                     /coded_by="XM_054061522.1:86..1567"
                     /db_xref="GeneID:104056094"
ORIGIN      
        1 mecaaagaef nillatdsyk vthykqyppn tskvysyfec rekktenskl rkvkyeetvf
       61 yglqyilnky lkgkvvtkek ikeakevyre hfqddvfnek gwnyilekyd ghlpieikav
      121 pegsviprgn vlftventdp ecywltnwie tilvqswypi tvatnsreqk kilakyllet
      181 sgslegleyk lhdfgyrgvs sqetagigas ahlvnfkgtd tvagialikk yygtkdpvpg
      241 ysvpaaehst itawgkdhek dafehivtqf ssvpvsvvsd sydiynacek iwgddlrhii
      301 earspeapli irpdsgnpld tvlkvleilg kkfpitensk gykllppylr viqgdgvdin
      361 tlqeivegmk knkwsienia fgsggallqk ltrdllncsf kcsyvvtngl gvnvfkdpva
      421 dpnkrskkgr lslhrtptgd yvtleegkgd leeygqdllh tvfkngkvtk sysfdevrqn
      481 arlknselev ash
//
LOCUS       XP_053917511             601 aa            linear   VRT 09-MAR-2023
DEFINITION  steryl-sulfatase isoform X1 [Cuculus canorus].
ACCESSION   XP_053917511
VERSION     XP_053917511.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061536.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..601
                     /product="steryl-sulfatase isoform X1"
                     /calculated_mol_wt=67916
     Region          42..565
                     /region_name="ES"
                     /note="Estrone sulfatase; cd16159"
                     /db_xref="CDD:293778"
     Site            order(50..51,90,149,151,180,305,357..358,383..384)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:293778"
     Site            order(90,149,151,180,305,383..384)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:293778"
     CDS             1..601
                     /gene="STS"
                     /coded_by="XM_054061536.1:473..2278"
                     /db_xref="GeneID:104063752"
ORIGIN      
        1 mwkaimfinp freerkkmrl fffliicqca insvkthgas npnfvllmad dlgigdlgcy
       61 gnktlrtpni drlaeegvtl tqhiaasplc tpsraafltg rypirsgmas fsrvgvflfs
      121 assgglpsee itfsrllkqr gyataligkw hlgmncessn dfchhplshg fdyfygltvt
      181 nlrdckpgqg svflkgvqks lvipmqiagi almslaivqy iglfnipfqa lgycmlitai
      241 slavltfffy hfrhlncflm rnhqiiqqpl syenltqrlt keavqfiern teapfllvls
      301 ylhvhtalya sknfrgkskh glygdaveem dwsvgqvldv lekynlsnkt lvyftsdqga
      361 hveeisssge vhggyngiyk ggksmnwegg irvpgllcwp gviqagayid eptsnmdifp
      421 tivklakaql psdriidghd lmpllqgkvt rskheflfhy cnaylnavrw hprnsesvwk
      481 vffftpnfsp edsngcyddh vcfchggfit whdppllfdl srdpeekvpl tpetesrfye
      541 ilrvihlevd nhsrslhavp dqlswdnllw kpwlqlccss ffqscycdyd segslpevys
      601 e
//
LOCUS       XP_053917520             587 aa            linear   VRT 09-MAR-2023
DEFINITION  steryl-sulfatase isoform X2 [Cuculus canorus].
ACCESSION   XP_053917520
VERSION     XP_053917520.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061545.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..587
                     /product="steryl-sulfatase isoform X2"
                     /calculated_mol_wt=66097
     Region          28..551
                     /region_name="ES"
                     /note="Estrone sulfatase; cd16159"
                     /db_xref="CDD:293778"
     Site            order(36..37,76,135,137,166,291,343..344,369..370)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:293778"
     Site            order(76,135,137,166,291,369..370)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:293778"
     CDS             1..587
                     /gene="STS"
                     /coded_by="XM_054061545.1:476..2239"
                     /db_xref="GeneID:104063752"
ORIGIN      
        1 mkkmrlfffl iicqcainsv kthgasnpnf vllmaddlgi gdlgcygnkt lrtpnidrla
       61 eegvtltqhi aasplctpsr aafltgrypi rsgmasfsrv gvflfsassg glpseeitfs
      121 rllkqrgyat aligkwhlgm ncessndfch hplshgfdyf ygltvtnlrd ckpgqgsvfl
      181 kgvqkslvip mqiagialms laivqyiglf nipfqalgyc mlitaislav ltfffyhfrh
      241 lncflmrnhq iiqqplsyen ltqrltkeav qfiernteap fllvlsylhv htalyasknf
      301 rgkskhglyg daveemdwsv gqvldvleky nlsnktlvyf tsdqgahvee isssgevhgg
      361 yngiykggks mnweggirvp gllcwpgviq agayidepts nmdifptivk lakaqlpsdr
      421 iidghdlmpl lqgkvtrskh eflfhycnay lnavrwhprn sesvwkvfff tpnfspedsn
      481 gcyddhvcfc hggfitwhdp pllfdlsrdp eekvpltpet esrfyeilrv ihlevdnhsr
      541 slhavpdqls wdnllwkpwl qlccssffqs cycdydsegs lpevyse
//
LOCUS       XP_053917530             587 aa            linear   VRT 09-MAR-2023
DEFINITION  steryl-sulfatase isoform X2 [Cuculus canorus].
ACCESSION   XP_053917530
VERSION     XP_053917530.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061555.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..587
                     /product="steryl-sulfatase isoform X2"
                     /calculated_mol_wt=66097
     Region          28..551
                     /region_name="ES"
                     /note="Estrone sulfatase; cd16159"
                     /db_xref="CDD:293778"
     Site            order(36..37,76,135,137,166,291,343..344,369..370)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:293778"
     Site            order(76,135,137,166,291,369..370)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:293778"
     CDS             1..587
                     /gene="STS"
                     /coded_by="XM_054061555.1:491..2254"
                     /db_xref="GeneID:104063752"
ORIGIN      
        1 mkkmrlfffl iicqcainsv kthgasnpnf vllmaddlgi gdlgcygnkt lrtpnidrla
       61 eegvtltqhi aasplctpsr aafltgrypi rsgmasfsrv gvflfsassg glpseeitfs
      121 rllkqrgyat aligkwhlgm ncessndfch hplshgfdyf ygltvtnlrd ckpgqgsvfl
      181 kgvqkslvip mqiagialms laivqyiglf nipfqalgyc mlitaislav ltfffyhfrh
      241 lncflmrnhq iiqqplsyen ltqrltkeav qfiernteap fllvlsylhv htalyasknf
      301 rgkskhglyg daveemdwsv gqvldvleky nlsnktlvyf tsdqgahvee isssgevhgg
      361 yngiykggks mnweggirvp gllcwpgviq agayidepts nmdifptivk lakaqlpsdr
      421 iidghdlmpl lqgkvtrskh eflfhycnay lnavrwhprn sesvwkvfff tpnfspedsn
      481 gcyddhvcfc hggfitwhdp pllfdlsrdp eekvpltpet esrfyeilrv ihlevdnhsr
      541 slhavpdqls wdnllwkpwl qlccssffqs cycdydsegs lpevyse
//
LOCUS       XP_053917540             584 aa            linear   VRT 09-MAR-2023
DEFINITION  steryl-sulfatase isoform X3 [Cuculus canorus].
ACCESSION   XP_053917540
VERSION     XP_053917540.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061565.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..584
                     /product="steryl-sulfatase isoform X3"
                     /calculated_mol_wt=65710
     Region          25..548
                     /region_name="ES"
                     /note="Estrone sulfatase; cd16159"
                     /db_xref="CDD:293778"
     Site            order(33..34,73,132,134,163,288,340..341,366..367)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:293778"
     Site            order(73,132,134,163,288,366..367)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:293778"
     CDS             1..584
                     /gene="STS"
                     /coded_by="XM_054061565.1:314..2068"
                     /db_xref="GeneID:104063752"
ORIGIN      
        1 mrlfffliic qcainsvkth gasnpnfvll maddlgigdl gcygnktlrt pnidrlaeeg
       61 vtltqhiaas plctpsraaf ltgrypirsg masfsrvgvf lfsassgglp seeitfsrll
      121 kqrgyatali gkwhlgmnce ssndfchhpl shgfdyfygl tvtnlrdckp gqgsvflkgv
      181 qkslvipmqi agialmslai vqyiglfnip fqalgycmli taislavltf ffyhfrhlnc
      241 flmrnhqiiq qplsyenltq rltkeavqfi ernteapfll vlsylhvhta lyasknfrgk
      301 skhglygdav eemdwsvgqv ldvlekynls nktlvyftsd qgahveeiss sgevhggyng
      361 iykggksmnw eggirvpgll cwpgviqaga yideptsnmd ifptivklak aqlpsdriid
      421 ghdlmpllqg kvtrskhefl fhycnaylna vrwhprnses vwkvffftpn fspedsngcy
      481 ddhvcfchgg fitwhdppll fdlsrdpeek vpltpetesr fyeilrvihl evdnhsrslh
      541 avpdqlswdn llwkpwlqlc cssffqscyc dydsegslpe vyse
//
LOCUS       XP_053917546             584 aa            linear   VRT 09-MAR-2023
DEFINITION  steryl-sulfatase isoform X3 [Cuculus canorus].
ACCESSION   XP_053917546
VERSION     XP_053917546.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061571.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..584
                     /product="steryl-sulfatase isoform X3"
                     /calculated_mol_wt=65710
     Region          25..548
                     /region_name="ES"
                     /note="Estrone sulfatase; cd16159"
                     /db_xref="CDD:293778"
     Site            order(33..34,73,132,134,163,288,340..341,366..367)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:293778"
     Site            order(73,132,134,163,288,366..367)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:293778"
     CDS             1..584
                     /gene="STS"
                     /coded_by="XM_054061571.1:550..2304"
                     /db_xref="GeneID:104063752"
ORIGIN      
        1 mrlfffliic qcainsvkth gasnpnfvll maddlgigdl gcygnktlrt pnidrlaeeg
       61 vtltqhiaas plctpsraaf ltgrypirsg masfsrvgvf lfsassgglp seeitfsrll
      121 kqrgyatali gkwhlgmnce ssndfchhpl shgfdyfygl tvtnlrdckp gqgsvflkgv
      181 qkslvipmqi agialmslai vqyiglfnip fqalgycmli taislavltf ffyhfrhlnc
      241 flmrnhqiiq qplsyenltq rltkeavqfi ernteapfll vlsylhvhta lyasknfrgk
      301 skhglygdav eemdwsvgqv ldvlekynls nktlvyftsd qgahveeiss sgevhggyng
      361 iykggksmnw eggirvpgll cwpgviqaga yideptsnmd ifptivklak aqlpsdriid
      421 ghdlmpllqg kvtrskhefl fhycnaylna vrwhprnses vwkvffftpn fspedsngcy
      481 ddhvcfchgg fitwhdppll fdlsrdpeek vpltpetesr fyeilrvihl evdnhsrslh
      541 avpdqlswdn llwkpwlqlc cssffqscyc dydsegslpe vyse
//
LOCUS       XP_053917556             584 aa            linear   VRT 09-MAR-2023
DEFINITION  steryl-sulfatase isoform X3 [Cuculus canorus].
ACCESSION   XP_053917556
VERSION     XP_053917556.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061581.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..584
                     /product="steryl-sulfatase isoform X3"
                     /calculated_mol_wt=65710
     Region          25..548
                     /region_name="ES"
                     /note="Estrone sulfatase; cd16159"
                     /db_xref="CDD:293778"
     Site            order(33..34,73,132,134,163,288,340..341,366..367)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:293778"
     Site            order(73,132,134,163,288,366..367)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:293778"
     CDS             1..584
                     /gene="STS"
                     /coded_by="XM_054061581.1:610..2364"
                     /db_xref="GeneID:104063752"
ORIGIN      
        1 mrlfffliic qcainsvkth gasnpnfvll maddlgigdl gcygnktlrt pnidrlaeeg
       61 vtltqhiaas plctpsraaf ltgrypirsg masfsrvgvf lfsassgglp seeitfsrll
      121 kqrgyatali gkwhlgmnce ssndfchhpl shgfdyfygl tvtnlrdckp gqgsvflkgv
      181 qkslvipmqi agialmslai vqyiglfnip fqalgycmli taislavltf ffyhfrhlnc
      241 flmrnhqiiq qplsyenltq rltkeavqfi ernteapfll vlsylhvhta lyasknfrgk
      301 skhglygdav eemdwsvgqv ldvlekynls nktlvyftsd qgahveeiss sgevhggyng
      361 iykggksmnw eggirvpgll cwpgviqaga yideptsnmd ifptivklak aqlpsdriid
      421 ghdlmpllqg kvtrskhefl fhycnaylna vrwhprnses vwkvffftpn fspedsngcy
      481 ddhvcfchgg fitwhdppll fdlsrdpeek vpltpetesr fyeilrvihl evdnhsrslh
      541 avpdqlswdn llwkpwlqlc cssffqscyc dydsegslpe vyse
//
LOCUS       XP_053917563             584 aa            linear   VRT 09-MAR-2023
DEFINITION  steryl-sulfatase isoform X3 [Cuculus canorus].
ACCESSION   XP_053917563
VERSION     XP_053917563.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061588.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..584
                     /product="steryl-sulfatase isoform X3"
                     /calculated_mol_wt=65710
     Region          25..548
                     /region_name="ES"
                     /note="Estrone sulfatase; cd16159"
                     /db_xref="CDD:293778"
     Site            order(33..34,73,132,134,163,288,340..341,366..367)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:293778"
     Site            order(73,132,134,163,288,366..367)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:293778"
     CDS             1..584
                     /gene="STS"
                     /coded_by="XM_054061588.1:211..1965"
                     /db_xref="GeneID:104063752"
ORIGIN      
        1 mrlfffliic qcainsvkth gasnpnfvll maddlgigdl gcygnktlrt pnidrlaeeg
       61 vtltqhiaas plctpsraaf ltgrypirsg masfsrvgvf lfsassgglp seeitfsrll
      121 kqrgyatali gkwhlgmnce ssndfchhpl shgfdyfygl tvtnlrdckp gqgsvflkgv
      181 qkslvipmqi agialmslai vqyiglfnip fqalgycmli taislavltf ffyhfrhlnc
      241 flmrnhqiiq qplsyenltq rltkeavqfi ernteapfll vlsylhvhta lyasknfrgk
      301 skhglygdav eemdwsvgqv ldvlekynls nktlvyftsd qgahveeiss sgevhggyng
      361 iykggksmnw eggirvpgll cwpgviqaga yideptsnmd ifptivklak aqlpsdriid
      421 ghdlmpllqg kvtrskhefl fhycnaylna vrwhprnses vwkvffftpn fspedsngcy
      481 ddhvcfchgg fitwhdppll fdlsrdpeek vpltpetesr fyeilrvihl evdnhsrslh
      541 avpdqlswdn llwkpwlqlc cssffqscyc dydsegslpe vyse
//
LOCUS       XP_053917573             584 aa            linear   VRT 09-MAR-2023
DEFINITION  steryl-sulfatase isoform X3 [Cuculus canorus].
ACCESSION   XP_053917573
VERSION     XP_053917573.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061598.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..584
                     /product="steryl-sulfatase isoform X3"
                     /calculated_mol_wt=65710
     Region          25..548
                     /region_name="ES"
                     /note="Estrone sulfatase; cd16159"
                     /db_xref="CDD:293778"
     Site            order(33..34,73,132,134,163,288,340..341,366..367)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:293778"
     Site            order(73,132,134,163,288,366..367)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:293778"
     CDS             1..584
                     /gene="STS"
                     /coded_by="XM_054061598.1:226..1980"
                     /db_xref="GeneID:104063752"
ORIGIN      
        1 mrlfffliic qcainsvkth gasnpnfvll maddlgigdl gcygnktlrt pnidrlaeeg
       61 vtltqhiaas plctpsraaf ltgrypirsg masfsrvgvf lfsassgglp seeitfsrll
      121 kqrgyatali gkwhlgmnce ssndfchhpl shgfdyfygl tvtnlrdckp gqgsvflkgv
      181 qkslvipmqi agialmslai vqyiglfnip fqalgycmli taislavltf ffyhfrhlnc
      241 flmrnhqiiq qplsyenltq rltkeavqfi ernteapfll vlsylhvhta lyasknfrgk
      301 skhglygdav eemdwsvgqv ldvlekynls nktlvyftsd qgahveeiss sgevhggyng
      361 iykggksmnw eggirvpgll cwpgviqaga yideptsnmd ifptivklak aqlpsdriid
      421 ghdlmpllqg kvtrskhefl fhycnaylna vrwhprnses vwkvffftpn fspedsngcy
      481 ddhvcfchgg fitwhdppll fdlsrdpeek vpltpetesr fyeilrvihl evdnhsrslh
      541 avpdqlswdn llwkpwlqlc cssffqscyc dydsegslpe vyse
//
LOCUS       XP_053917579             584 aa            linear   VRT 09-MAR-2023
DEFINITION  steryl-sulfatase isoform X3 [Cuculus canorus].
ACCESSION   XP_053917579
VERSION     XP_053917579.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061604.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..584
                     /product="steryl-sulfatase isoform X3"
                     /calculated_mol_wt=65710
     Region          25..548
                     /region_name="ES"
                     /note="Estrone sulfatase; cd16159"
                     /db_xref="CDD:293778"
     Site            order(33..34,73,132,134,163,288,340..341,366..367)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:293778"
     Site            order(73,132,134,163,288,366..367)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:293778"
     CDS             1..584
                     /gene="STS"
                     /coded_by="XM_054061604.1:291..2045"
                     /db_xref="GeneID:104063752"
ORIGIN      
        1 mrlfffliic qcainsvkth gasnpnfvll maddlgigdl gcygnktlrt pnidrlaeeg
       61 vtltqhiaas plctpsraaf ltgrypirsg masfsrvgvf lfsassgglp seeitfsrll
      121 kqrgyatali gkwhlgmnce ssndfchhpl shgfdyfygl tvtnlrdckp gqgsvflkgv
      181 qkslvipmqi agialmslai vqyiglfnip fqalgycmli taislavltf ffyhfrhlnc
      241 flmrnhqiiq qplsyenltq rltkeavqfi ernteapfll vlsylhvhta lyasknfrgk
      301 skhglygdav eemdwsvgqv ldvlekynls nktlvyftsd qgahveeiss sgevhggyng
      361 iykggksmnw eggirvpgll cwpgviqaga yideptsnmd ifptivklak aqlpsdriid
      421 ghdlmpllqg kvtrskhefl fhycnaylna vrwhprnses vwkvffftpn fspedsngcy
      481 ddhvcfchgg fitwhdppll fdlsrdpeek vpltpetesr fyeilrvihl evdnhsrslh
      541 avpdqlswdn llwkpwlqlc cssffqscyc dydsegslpe vyse
//
LOCUS       XP_053917588             584 aa            linear   VRT 09-MAR-2023
DEFINITION  steryl-sulfatase isoform X3 [Cuculus canorus].
ACCESSION   XP_053917588
VERSION     XP_053917588.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061613.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..584
                     /product="steryl-sulfatase isoform X3"
                     /calculated_mol_wt=65710
     Region          25..548
                     /region_name="ES"
                     /note="Estrone sulfatase; cd16159"
                     /db_xref="CDD:293778"
     Site            order(33..34,73,132,134,163,288,340..341,366..367)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:293778"
     Site            order(73,132,134,163,288,366..367)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:293778"
     CDS             1..584
                     /gene="STS"
                     /coded_by="XM_054061613.1:522..2276"
                     /db_xref="GeneID:104063752"
ORIGIN      
        1 mrlfffliic qcainsvkth gasnpnfvll maddlgigdl gcygnktlrt pnidrlaeeg
       61 vtltqhiaas plctpsraaf ltgrypirsg masfsrvgvf lfsassgglp seeitfsrll
      121 kqrgyatali gkwhlgmnce ssndfchhpl shgfdyfygl tvtnlrdckp gqgsvflkgv
      181 qkslvipmqi agialmslai vqyiglfnip fqalgycmli taislavltf ffyhfrhlnc
      241 flmrnhqiiq qplsyenltq rltkeavqfi ernteapfll vlsylhvhta lyasknfrgk
      301 skhglygdav eemdwsvgqv ldvlekynls nktlvyftsd qgahveeiss sgevhggyng
      361 iykggksmnw eggirvpgll cwpgviqaga yideptsnmd ifptivklak aqlpsdriid
      421 ghdlmpllqg kvtrskhefl fhycnaylna vrwhprnses vwkvffftpn fspedsngcy
      481 ddhvcfchgg fitwhdppll fdlsrdpeek vpltpetesr fyeilrvihl evdnhsrslh
      541 avpdqlswdn llwkpwlqlc cssffqscyc dydsegslpe vyse
//
LOCUS       XP_053917590             584 aa            linear   VRT 09-MAR-2023
DEFINITION  steryl-sulfatase isoform X3 [Cuculus canorus].
ACCESSION   XP_053917590
VERSION     XP_053917590.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061615.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..584
                     /product="steryl-sulfatase isoform X3"
                     /calculated_mol_wt=65710
     Region          25..548
                     /region_name="ES"
                     /note="Estrone sulfatase; cd16159"
                     /db_xref="CDD:293778"
     Site            order(33..34,73,132,134,163,288,340..341,366..367)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:293778"
     Site            order(73,132,134,163,288,366..367)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:293778"
     CDS             1..584
                     /gene="STS"
                     /coded_by="XM_054061615.1:507..2261"
                     /db_xref="GeneID:104063752"
ORIGIN      
        1 mrlfffliic qcainsvkth gasnpnfvll maddlgigdl gcygnktlrt pnidrlaeeg
       61 vtltqhiaas plctpsraaf ltgrypirsg masfsrvgvf lfsassgglp seeitfsrll
      121 kqrgyatali gkwhlgmnce ssndfchhpl shgfdyfygl tvtnlrdckp gqgsvflkgv
      181 qkslvipmqi agialmslai vqyiglfnip fqalgycmli taislavltf ffyhfrhlnc
      241 flmrnhqiiq qplsyenltq rltkeavqfi ernteapfll vlsylhvhta lyasknfrgk
      301 skhglygdav eemdwsvgqv ldvlekynls nktlvyftsd qgahveeiss sgevhggyng
      361 iykggksmnw eggirvpgll cwpgviqaga yideptsnmd ifptivklak aqlpsdriid
      421 ghdlmpllqg kvtrskhefl fhycnaylna vrwhprnses vwkvffftpn fspedsngcy
      481 ddhvcfchgg fitwhdppll fdlsrdpeek vpltpetesr fyeilrvihl evdnhsrslh
      541 avpdqlswdn llwkpwlqlc cssffqscyc dydsegslpe vyse
//
LOCUS       XP_053917596             487 aa            linear   VRT 09-MAR-2023
DEFINITION  steryl-sulfatase isoform X4 [Cuculus canorus].
ACCESSION   XP_053917596
VERSION     XP_053917596.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061621.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..487
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..487
                     /product="steryl-sulfatase isoform X4"
                     /calculated_mol_wt=54493
     Region          42..475
                     /region_name="ALP_like"
                     /note="alkaline phosphatases and sulfatases; cl23718"
                     /db_xref="CDD:474031"
     Site            order(50,90,305,357..358)
                     /site_type="active"
                     /db_xref="CDD:293778"
     Site            order(50,90,305,358)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:293778"
     CDS             1..487
                     /gene="STS"
                     /coded_by="XM_054061621.1:512..1975"
                     /db_xref="GeneID:104063752"
ORIGIN      
        1 mwkaimfinp freerkkmrl fffliicqca insvkthgas npnfvllmad dlgigdlgcy
       61 gnktlrtpni drlaeegvtl tqhiaasplc tpsraafltg rypirsgmas fsrvgvflfs
      121 assgglpsee itfsrllkqr gyataligkw hlgmncessn dfchhplshg fdyfygltvt
      181 nlrdckpgqg svflkgvqks lvipmqiagi almslaivqy iglfnipfqa lgycmlitai
      241 slavltfffy hfrhlncflm rnhqiiqqpl syenltqrlt keavqfiern teapfllvls
      301 ylhvhtalya sknfrgkskh glygdaveem dwsvgqvldv lekynlsnkt lvyftsdqga
      361 hveeisssge vhggyngiyk ggksmnwegg irvpgllcwp gviqagayid eptsnmdifp
      421 tivklakaql psdriidghd lmpllqgkvt rskheflfhy cnaylnavrw hprnsvsnen
      481 mrqramg
//
LOCUS       XP_053917607             215 aa            linear   VRT 09-MAR-2023
DEFINITION  pseudouridine-5'-phosphatase isoform X1 [Cuculus canorus].
ACCESSION   XP_053917607
VERSION     XP_053917607.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061632.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..215
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..215
                     /product="pseudouridine-5'-phosphatase isoform X1"
                     /calculated_mol_wt=24307
     Region          6..214
                     /region_name="Haloacid Dehalogenase-like Hydrolases"
                     /note="The haloacid dehalogenase (HAD) superfamily
                     includes carbon and phosphorus hydrolases such as
                     2-haloalkonoate dehalogenase, epoxide hydrolase,
                     phosphoserine phosphatase, phosphomannomutase,
                     phosphoglycolate phosphatase, P-type ATPase, among others.
                     These...; cl21460"
                     /db_xref="CDD:473868"
     CDS             1..215
                     /gene="PUDP"
                     /coded_by="XM_054061632.1:16..663"
                     /db_xref="GeneID:104063732"
ORIGIN      
        1 mrswwlwdte rlytvvfeei cgrygkaytw dvkslvmgkk alegaqiird vldlpitkee
       61 llresklkqe kifptaelmp gvdklirhlh khnipiavat ssaeetflik tsrhkdffgl
      121 fhhvvlgnda evkygkpqpd aflvcakrfh ppappekclv fedsplgvkg alaagmqvvm
      181 ipdeklnpdl kkeatlllns ledfkpelfg lppyd
//
LOCUS       XP_009564284             233 aa            linear   VRT 09-MAR-2023
DEFINITION  pseudouridine-5'-phosphatase isoform X2 [Cuculus canorus].
ACCESSION   XP_009564284
VERSION     XP_009564284.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565989.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564284.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..233
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..233
                     /product="pseudouridine-5'-phosphatase isoform X2"
                     /calculated_mol_wt=25908
     Region          13..201
                     /region_name="HAD_AtGPP-like"
                     /note="subfamily of beta-phosphoglucomutase-like family,
                     similar to Arabidopsis thaliana Gpp1 and Gpp2; cd07529"
                     /db_xref="CDD:319831"
     Site            order(19..23,118..119,154,180..181,184..185)
                     /site_type="active"
                     /db_xref="CDD:319831"
     CDS             1..233
                     /gene="PUDP"
                     /coded_by="XM_009565989.2:140..841"
                     /db_xref="GeneID:104063732"
ORIGIN      
        1 msssscsaal rpvthlifdm dgllldterl ytvvfeeicg rygkaytwdv kslvmgkkal
       61 egaqiirdvl dlpitkeell resklkqeki fptaelmpgv dklirhlhkh nipiavatss
      121 aeetflikts rhkdffglfh hvvlgndaev kygkpqpdaf lvcakrfhpp appekclvfe
      181 dsplgvkgal aagmqvvmip deklnpdlkk eatlllnsle dfkpelfglp pyd
//
LOCUS       XP_053917638             595 aa            linear   VRT 09-MAR-2023
DEFINITION  dual specificity tyrosine-phosphorylation-regulated kinase 2
            [Cuculus canorus].
ACCESSION   XP_053917638
VERSION     XP_053917638.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061663.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..595
                     /product="dual specificity
                     tyrosine-phosphorylation-regulated kinase 2"
                     /calculated_mol_wt=65835
     Region          150..529
                     /region_name="PKc_DYRK2_3"
                     /note="Catalytic domain of the protein kinases,
                     Dual-specificity tYrosine-phosphorylated and -Regulated
                     Kinases 2 and 3; cd14224"
                     /db_xref="CDD:271126"
     Site            order(222..226,230,243,245,259,279,295..298,301,303..304,
                     342,344,346..347,349,362,365,374,376..379,381,418)
                     /site_type="active"
                     /db_xref="CDD:271126"
     Site            order(222..226,230,243,245,279,295..298,301,342,344,
                     346..347,349,362)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:271126"
     Site            order(259,303,342,344,365,374,376..379,381,418)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:271126"
     Site            361..381
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:271126"
     CDS             1..595
                     /gene="DYRK2"
                     /coded_by="XM_054061663.1:252..2039"
                     /db_xref="GeneID:104061379"
ORIGIN      
        1 mltrkpsata taafppgrag eggrplqssp gtgagvsrag agtgppspla lpplrasnps
       61 htvggskhtm nehlhvgshg qiqvqqlfed nsnkrtvltt qpnglttlsk sglpvvqdrq
      121 sesahrrqgs sgslkstdgt gkvkpsvmtp eqamkqymqk ltafehheif sypeiyflgp
      181 nakkrqgvvg gsnncgyddd qgsyiqvphd hiayryevlk vigkgsfgqv vkaydhkmhq
      241 hvalkmvrne krfhrqaaee ikilehlrkq dkdnnmnvih mlenftfrsh icmtfellsm
      301 nlyelikknk fqgfslplvr kfahsilqcl dalhknriih cdlkpenill kqqgrsgikv
      361 idfgsscyeh qrvytyiqsr fyrapevilg arygmpidmw slgcilaell tgypllpged
      421 egdqlacmie llgmpspkll dsskraknfv sskgyprycs ittlsdgsvi lnggrsrrgk
      481 lrgppesrew gnalkgcddp lfldflkqcl ewdpairmtp gqalrhpwlr rrlpkpptge
      541 kasakrites tgaitsiskl pptsssaskl rtnlaqmtda ngniqqrtvl pklvs
//
LOCUS       XP_053917661             821 aa            linear   VRT 09-MAR-2023
DEFINITION  caldesmon isoform X1 [Cuculus canorus].
ACCESSION   XP_053917661
VERSION     XP_053917661.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061686.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..821
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..821
                     /product="caldesmon isoform X1"
                     /calculated_mol_wt=94836
     Region          31..>242
                     /region_name="Caldesmon"
                     /note="pfam02029"
                     /db_xref="CDD:460421"
     Region          <416..787
                     /region_name="Caldesmon"
                     /note="pfam02029"
                     /db_xref="CDD:460421"
     CDS             1..821
                     /gene="CALD1"
                     /coded_by="XM_054061686.1:497..2962"
                     /db_xref="GeneID:104067838"
ORIGIN      
        1 mddferrrel rrqkreemrl eaerlsyqrn dddeeeaare rrrrarqerl rqkeegdlsg
       61 dvmeksevna qnsvaeeetk rttttrgtde eaallerlar reerrqkrlq ealerqkefd
      121 ptitdgslsl psrrevnnve enettgkeek aeirrgryea eetetvtksy qrnnwrqdge
      181 eeekkegkdk edvpeekpke vpieenqvdv taekstdkee vvetknvain adehkavndt
      241 navlegeqsi tdavaeekvr deqkaeeerk kaeereklea eekerlkaee ekraaedkqk
      301 aeeekraaee rerakaeeek raaeererak aeeekraaee rerakaeeek raaeererak
      361 aeeekraaee rerakaeeek raaeererak aeeekraaee kakleaeklk etqkveekki
      421 edkqvkekkl qeekpqaafl rkqgeekevk veakkeklpd eklqptskkd qvkddkdkgk
      481 spkeemksiw drkkglpeqk aqngerelta pklkstenav grsnlkgtan aevaklgsqv
      541 eavkrledqr rrrgenedfe klkekqqeaa aeldelkkrr eerrkileee eqkkkqeeae
      601 rkareeeekr rmkeeierrr aeaaekrqkm pedgvsedkk pfkcfspkgs slkieeraef
      661 lnksaqksgm kpthttavvs kidsrleqyt saiegtkaar pakpaasdlp vpaegvrnik
      721 smwekgnvfs spsgtgtpnk etaglkvgvs srinewltkt pesnksptpk psdlkpgdvs
      781 gkrnlwekqs veksaasssk vsalgkktet naglrqfeke p
//
LOCUS       XP_053917669             821 aa            linear   VRT 09-MAR-2023
DEFINITION  caldesmon isoform X1 [Cuculus canorus].
ACCESSION   XP_053917669
VERSION     XP_053917669.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061694.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..821
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..821
                     /product="caldesmon isoform X1"
                     /calculated_mol_wt=94836
     Region          31..>242
                     /region_name="Caldesmon"
                     /note="pfam02029"
                     /db_xref="CDD:460421"
     Region          <416..787
                     /region_name="Caldesmon"
                     /note="pfam02029"
                     /db_xref="CDD:460421"
     CDS             1..821
                     /gene="CALD1"
                     /coded_by="XM_054061694.1:574..3039"
                     /db_xref="GeneID:104067838"
ORIGIN      
        1 mddferrrel rrqkreemrl eaerlsyqrn dddeeeaare rrrrarqerl rqkeegdlsg
       61 dvmeksevna qnsvaeeetk rttttrgtde eaallerlar reerrqkrlq ealerqkefd
      121 ptitdgslsl psrrevnnve enettgkeek aeirrgryea eetetvtksy qrnnwrqdge
      181 eeekkegkdk edvpeekpke vpieenqvdv taekstdkee vvetknvain adehkavndt
      241 navlegeqsi tdavaeekvr deqkaeeerk kaeereklea eekerlkaee ekraaedkqk
      301 aeeekraaee rerakaeeek raaeererak aeeekraaee rerakaeeek raaeererak
      361 aeeekraaee rerakaeeek raaeererak aeeekraaee kakleaeklk etqkveekki
      421 edkqvkekkl qeekpqaafl rkqgeekevk veakkeklpd eklqptskkd qvkddkdkgk
      481 spkeemksiw drkkglpeqk aqngerelta pklkstenav grsnlkgtan aevaklgsqv
      541 eavkrledqr rrrgenedfe klkekqqeaa aeldelkkrr eerrkileee eqkkkqeeae
      601 rkareeeekr rmkeeierrr aeaaekrqkm pedgvsedkk pfkcfspkgs slkieeraef
      661 lnksaqksgm kpthttavvs kidsrleqyt saiegtkaar pakpaasdlp vpaegvrnik
      721 smwekgnvfs spsgtgtpnk etaglkvgvs srinewltkt pesnksptpk psdlkpgdvs
      781 gkrnlwekqs veksaasssk vsalgkktet naglrqfeke p
//
LOCUS       XP_053917679             821 aa            linear   VRT 09-MAR-2023
DEFINITION  caldesmon isoform X1 [Cuculus canorus].
ACCESSION   XP_053917679
VERSION     XP_053917679.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061704.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..821
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..821
                     /product="caldesmon isoform X1"
                     /calculated_mol_wt=94836
     Region          31..>242
                     /region_name="Caldesmon"
                     /note="pfam02029"
                     /db_xref="CDD:460421"
     Region          <416..787
                     /region_name="Caldesmon"
                     /note="pfam02029"
                     /db_xref="CDD:460421"
     CDS             1..821
                     /gene="CALD1"
                     /coded_by="XM_054061704.1:405..2870"
                     /db_xref="GeneID:104067838"
ORIGIN      
        1 mddferrrel rrqkreemrl eaerlsyqrn dddeeeaare rrrrarqerl rqkeegdlsg
       61 dvmeksevna qnsvaeeetk rttttrgtde eaallerlar reerrqkrlq ealerqkefd
      121 ptitdgslsl psrrevnnve enettgkeek aeirrgryea eetetvtksy qrnnwrqdge
      181 eeekkegkdk edvpeekpke vpieenqvdv taekstdkee vvetknvain adehkavndt
      241 navlegeqsi tdavaeekvr deqkaeeerk kaeereklea eekerlkaee ekraaedkqk
      301 aeeekraaee rerakaeeek raaeererak aeeekraaee rerakaeeek raaeererak
      361 aeeekraaee rerakaeeek raaeererak aeeekraaee kakleaeklk etqkveekki
      421 edkqvkekkl qeekpqaafl rkqgeekevk veakkeklpd eklqptskkd qvkddkdkgk
      481 spkeemksiw drkkglpeqk aqngerelta pklkstenav grsnlkgtan aevaklgsqv
      541 eavkrledqr rrrgenedfe klkekqqeaa aeldelkkrr eerrkileee eqkkkqeeae
      601 rkareeeekr rmkeeierrr aeaaekrqkm pedgvsedkk pfkcfspkgs slkieeraef
      661 lnksaqksgm kpthttavvs kidsrleqyt saiegtkaar pakpaasdlp vpaegvrnik
      721 smwekgnvfs spsgtgtpnk etaglkvgvs srinewltkt pesnksptpk psdlkpgdvs
      781 gkrnlwekqs veksaasssk vsalgkktet naglrqfeke p
//
LOCUS       XP_053917689             821 aa            linear   VRT 09-MAR-2023
DEFINITION  caldesmon isoform X1 [Cuculus canorus].
ACCESSION   XP_053917689
VERSION     XP_053917689.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061714.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..821
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..821
                     /product="caldesmon isoform X1"
                     /calculated_mol_wt=94836
     Region          31..>242
                     /region_name="Caldesmon"
                     /note="pfam02029"
                     /db_xref="CDD:460421"
     Region          <416..787
                     /region_name="Caldesmon"
                     /note="pfam02029"
                     /db_xref="CDD:460421"
     CDS             1..821
                     /gene="CALD1"
                     /coded_by="XM_054061714.1:217..2682"
                     /db_xref="GeneID:104067838"
ORIGIN      
        1 mddferrrel rrqkreemrl eaerlsyqrn dddeeeaare rrrrarqerl rqkeegdlsg
       61 dvmeksevna qnsvaeeetk rttttrgtde eaallerlar reerrqkrlq ealerqkefd
      121 ptitdgslsl psrrevnnve enettgkeek aeirrgryea eetetvtksy qrnnwrqdge
      181 eeekkegkdk edvpeekpke vpieenqvdv taekstdkee vvetknvain adehkavndt
      241 navlegeqsi tdavaeekvr deqkaeeerk kaeereklea eekerlkaee ekraaedkqk
      301 aeeekraaee rerakaeeek raaeererak aeeekraaee rerakaeeek raaeererak
      361 aeeekraaee rerakaeeek raaeererak aeeekraaee kakleaeklk etqkveekki
      421 edkqvkekkl qeekpqaafl rkqgeekevk veakkeklpd eklqptskkd qvkddkdkgk
      481 spkeemksiw drkkglpeqk aqngerelta pklkstenav grsnlkgtan aevaklgsqv
      541 eavkrledqr rrrgenedfe klkekqqeaa aeldelkkrr eerrkileee eqkkkqeeae
      601 rkareeeekr rmkeeierrr aeaaekrqkm pedgvsedkk pfkcfspkgs slkieeraef
      661 lnksaqksgm kpthttavvs kidsrleqyt saiegtkaar pakpaasdlp vpaegvrnik
      721 smwekgnvfs spsgtgtpnk etaglkvgvs srinewltkt pesnksptpk psdlkpgdvs
      781 gkrnlwekqs veksaasssk vsalgkktet naglrqfeke p
//
LOCUS       XP_053917699             821 aa            linear   VRT 09-MAR-2023
DEFINITION  caldesmon isoform X1 [Cuculus canorus].
ACCESSION   XP_053917699
VERSION     XP_053917699.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061724.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..821
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..821
                     /product="caldesmon isoform X1"
                     /calculated_mol_wt=94836
     Region          31..>242
                     /region_name="Caldesmon"
                     /note="pfam02029"
                     /db_xref="CDD:460421"
     Region          <416..787
                     /region_name="Caldesmon"
                     /note="pfam02029"
                     /db_xref="CDD:460421"
     CDS             1..821
                     /gene="CALD1"
                     /coded_by="XM_054061724.1:482..2947"
                     /db_xref="GeneID:104067838"
ORIGIN      
        1 mddferrrel rrqkreemrl eaerlsyqrn dddeeeaare rrrrarqerl rqkeegdlsg
       61 dvmeksevna qnsvaeeetk rttttrgtde eaallerlar reerrqkrlq ealerqkefd
      121 ptitdgslsl psrrevnnve enettgkeek aeirrgryea eetetvtksy qrnnwrqdge
      181 eeekkegkdk edvpeekpke vpieenqvdv taekstdkee vvetknvain adehkavndt
      241 navlegeqsi tdavaeekvr deqkaeeerk kaeereklea eekerlkaee ekraaedkqk
      301 aeeekraaee rerakaeeek raaeererak aeeekraaee rerakaeeek raaeererak
      361 aeeekraaee rerakaeeek raaeererak aeeekraaee kakleaeklk etqkveekki
      421 edkqvkekkl qeekpqaafl rkqgeekevk veakkeklpd eklqptskkd qvkddkdkgk
      481 spkeemksiw drkkglpeqk aqngerelta pklkstenav grsnlkgtan aevaklgsqv
      541 eavkrledqr rrrgenedfe klkekqqeaa aeldelkkrr eerrkileee eqkkkqeeae
      601 rkareeeekr rmkeeierrr aeaaekrqkm pedgvsedkk pfkcfspkgs slkieeraef
      661 lnksaqksgm kpthttavvs kidsrleqyt saiegtkaar pakpaasdlp vpaegvrnik
      721 smwekgnvfs spsgtgtpnk etaglkvgvs srinewltkt pesnksptpk psdlkpgdvs
      781 gkrnlwekqs veksaasssk vsalgkktet naglrqfeke p
//
LOCUS       XP_053917708             821 aa            linear   VRT 09-MAR-2023
DEFINITION  caldesmon isoform X1 [Cuculus canorus].
ACCESSION   XP_053917708
VERSION     XP_053917708.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061733.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..821
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..821
                     /product="caldesmon isoform X1"
                     /calculated_mol_wt=94836
     Region          31..>242
                     /region_name="Caldesmon"
                     /note="pfam02029"
                     /db_xref="CDD:460421"
     Region          <416..787
                     /region_name="Caldesmon"
                     /note="pfam02029"
                     /db_xref="CDD:460421"
     CDS             1..821
                     /gene="CALD1"
                     /coded_by="XM_054061733.1:147..2612"
                     /db_xref="GeneID:104067838"
ORIGIN      
        1 mddferrrel rrqkreemrl eaerlsyqrn dddeeeaare rrrrarqerl rqkeegdlsg
       61 dvmeksevna qnsvaeeetk rttttrgtde eaallerlar reerrqkrlq ealerqkefd
      121 ptitdgslsl psrrevnnve enettgkeek aeirrgryea eetetvtksy qrnnwrqdge
      181 eeekkegkdk edvpeekpke vpieenqvdv taekstdkee vvetknvain adehkavndt
      241 navlegeqsi tdavaeekvr deqkaeeerk kaeereklea eekerlkaee ekraaedkqk
      301 aeeekraaee rerakaeeek raaeererak aeeekraaee rerakaeeek raaeererak
      361 aeeekraaee rerakaeeek raaeererak aeeekraaee kakleaeklk etqkveekki
      421 edkqvkekkl qeekpqaafl rkqgeekevk veakkeklpd eklqptskkd qvkddkdkgk
      481 spkeemksiw drkkglpeqk aqngerelta pklkstenav grsnlkgtan aevaklgsqv
      541 eavkrledqr rrrgenedfe klkekqqeaa aeldelkkrr eerrkileee eqkkkqeeae
      601 rkareeeekr rmkeeierrr aeaaekrqkm pedgvsedkk pfkcfspkgs slkieeraef
      661 lnksaqksgm kpthttavvs kidsrleqyt saiegtkaar pakpaasdlp vpaegvrnik
      721 smwekgnvfs spsgtgtpnk etaglkvgvs srinewltkt pesnksptpk psdlkpgdvs
      781 gkrnlwekqs veksaasssk vsalgkktet naglrqfeke p
//
LOCUS       XP_053917718             820 aa            linear   VRT 09-MAR-2023
DEFINITION  caldesmon isoform X2 [Cuculus canorus].
ACCESSION   XP_053917718
VERSION     XP_053917718.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061743.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..820
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..820
                     /product="caldesmon isoform X2"
                     /calculated_mol_wt=94765
     Region          31..>242
                     /region_name="Caldesmon"
                     /note="pfam02029"
                     /db_xref="CDD:460421"
     Region          <416..787
                     /region_name="Caldesmon"
                     /note="pfam02029"
                     /db_xref="CDD:460421"
     CDS             1..820
                     /gene="CALD1"
                     /coded_by="XM_054061743.1:496..2958"
                     /db_xref="GeneID:104067838"
ORIGIN      
        1 mddferrrel rrqkreemrl eaerlsyqrn dddeeeaare rrrrarqerl rqkeegdlsg
       61 dvmeksevna qnsvaeeetk rttttrgtde eaallerlar reerrqkrlq ealerqkefd
      121 ptitdgslsl psrrevnnve enettgkeek aeirrgryea eetetvtksy qrnnwrqdge
      181 eeekkegkdk edvpeekpke vpieenqvdv taekstdkee vvetknvain adehkavndt
      241 navlegeqsi tdavaeekvr deqkaeeerk kaeereklea eekerlkaee ekraaedkqk
      301 aeeekraaee rerakaeeek raaeererak aeeekraaee rerakaeeek raaeererak
      361 aeeekraaee rerakaeeek raaeererak aeeekraaee kakleaeklk etqkveekki
      421 edkqvkekkl qeekpqaafl rkqgeekevk veakkeklpd eklqptskkd qvkddkdkgk
      481 spkeemksiw drkkglpeqk aqngerelta pklkstenav grsnlkgtan aevaklgsqv
      541 eavkrledqr rrrgenedfe klkekqqeaa aeldelkkrr eerrkileee eqkkkqeeae
      601 rkareeeekr rmkeeierrr aeaaekrqkm pedgvsedkk pfkcfspkgs slkieeraef
      661 lnksaqksgm kpthttavvs kidsrleqyt saiegtkaar pakpaasdlp vpaegvrnik
      721 smwekgnvfs spsgtgtpnk etaglkvgvs srinewltkt pesnksptpk psdlkpgdvs
      781 gkrnlwekqs veksaasssk vsalgkktet nglrqfekep
//
LOCUS       XP_053917727             813 aa            linear   VRT 09-MAR-2023
DEFINITION  caldesmon isoform X3 [Cuculus canorus].
ACCESSION   XP_053917727
VERSION     XP_053917727.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061752.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..813
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..813
                     /product="caldesmon isoform X3"
                     /calculated_mol_wt=93474
     Region          23..>234
                     /region_name="Caldesmon"
                     /note="pfam02029"
                     /db_xref="CDD:460421"
     Region          <408..779
                     /region_name="Caldesmon"
                     /note="pfam02029"
                     /db_xref="CDD:460421"
     CDS             1..813
                     /gene="CALD1"
                     /coded_by="XM_054061752.1:230..2671"
                     /db_xref="GeneID:104067838"
ORIGIN      
        1 misrsycrqn lsslsklsyq rndddeeeaa rerrrrarqe rlrqkeegdl sgdvmeksev
       61 naqnsvaeee tkrttttrgt deeaallerl arreerrqkr lqealerqke fdptitdgsl
      121 slpsrrevnn veenettgke ekaeirrgry eaeetetvtk syqrnnwrqd geeeekkegk
      181 dkedvpeekp kevpieenqv dvtaekstdk eevvetknva inadehkavn dtnavlegeq
      241 sitdavaeek vrdeqkaeee rkkaeerekl eaeekerlka eeekraaedk qkaeeekraa
      301 eererakaee ekraaeerer akaeeekraa eererakaee ekraaeerer akaeeekraa
      361 eererakaee ekraaeerer akaeeekraa eekakleaek lketqkveek kiedkqvkek
      421 klqeekpqaa flrkqgeeke vkveakkekl pdeklqptsk kdqvkddkdk gkspkeemks
      481 iwdrkkglpe qkaqngerel tapklksten avgrsnlkgt anaevaklgs qveavkrled
      541 qrrrrgened feklkekqqe aaaeldelkk rreerrkile eeeqkkkqee aerkareeee
      601 krrmkeeier rraeaaekrq kmpedgvsed kkpfkcfspk gsslkieera eflnksaqks
      661 gmkpthttav vskidsrleq ytsaiegtka arpakpaasd lpvpaegvrn iksmwekgnv
      721 fsspsgtgtp nketaglkvg vssrinewlt ktpesnkspt pkpsdlkpgd vsgkrnlwek
      781 qsveksaass skvsalgkkt etnaglrqfe kep
//
LOCUS       XP_053917734             557 aa            linear   VRT 09-MAR-2023
DEFINITION  caldesmon isoform X4 [Cuculus canorus].
ACCESSION   XP_053917734
VERSION     XP_053917734.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061759.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..557
                     /product="caldesmon isoform X4"
                     /calculated_mol_wt=64057
     Region          31..523
                     /region_name="Caldesmon"
                     /note="pfam02029"
                     /db_xref="CDD:460421"
     CDS             1..557
                     /gene="CALD1"
                     /coded_by="XM_054061759.1:484..2157"
                     /db_xref="GeneID:104067838"
ORIGIN      
        1 mddferrrel rrqkreemrl eaerlsyqrn dddeeeaare rrrrarqerl rqkeegdlsg
       61 dvmeksevna qnsvaeeetk rttttrgtde eaallerlar reerrqkrlq ealerqkefd
      121 ptitdgslsl psrrevnnve enettgkeek aeirrgryea eetetvtksy qrnnwrqdge
      181 eeekkegkdk edvpeekpke vpieenqvkd dkdkgkspke emksiwdrkk glpeqkaqng
      241 ereltapklk stenavgrsn lkgtanaeva klgsqveavk rledqrrrrg enedfeklke
      301 kqqeaaaeld elkkrreerr kileeeeqkk kqeeaerkar eeeekrrmke eierrraeaa
      361 ekrqkmpedg vsedkkpfkc fspkgsslki eeraeflnks aqksgmkpth ttavvskids
      421 rleqytsaie gtkaarpakp aasdlpvpae gvrniksmwe kgnvfsspsg tgtpnketag
      481 lkvgvssrin ewltktpesn ksptpkpsdl kpgdvsgkrn lwekqsveks aassskvsal
      541 gkktetnagl rqfekep
//
LOCUS       XP_053917745             556 aa            linear   VRT 09-MAR-2023
DEFINITION  caldesmon isoform X5 [Cuculus canorus].
ACCESSION   XP_053917745
VERSION     XP_053917745.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061770.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..556
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..556
                     /product="caldesmon isoform X5"
                     /calculated_mol_wt=63986
     Region          31..523
                     /region_name="Caldesmon"
                     /note="pfam02029"
                     /db_xref="CDD:460421"
     CDS             1..556
                     /gene="CALD1"
                     /coded_by="XM_054061770.1:484..2154"
                     /db_xref="GeneID:104067838"
ORIGIN      
        1 mddferrrel rrqkreemrl eaerlsyqrn dddeeeaare rrrrarqerl rqkeegdlsg
       61 dvmeksevna qnsvaeeetk rttttrgtde eaallerlar reerrqkrlq ealerqkefd
      121 ptitdgslsl psrrevnnve enettgkeek aeirrgryea eetetvtksy qrnnwrqdge
      181 eeekkegkdk edvpeekpke vpieenqvkd dkdkgkspke emksiwdrkk glpeqkaqng
      241 ereltapklk stenavgrsn lkgtanaeva klgsqveavk rledqrrrrg enedfeklke
      301 kqqeaaaeld elkkrreerr kileeeeqkk kqeeaerkar eeeekrrmke eierrraeaa
      361 ekrqkmpedg vsedkkpfkc fspkgsslki eeraeflnks aqksgmkpth ttavvskids
      421 rleqytsaie gtkaarpakp aasdlpvpae gvrniksmwe kgnvfsspsg tgtpnketag
      481 lkvgvssrin ewltktpesn ksptpkpsdl kpgdvsgkrn lwekqsveks aassskvsal
      541 gkktetnglr qfekep
//
LOCUS       XP_009568928             317 aa            linear   VRT 09-MAR-2023
DEFINITION  aldo-keto reductase family 1 member B1 [Cuculus canorus].
ACCESSION   XP_009568928
VERSION     XP_009568928.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009570633.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..317
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..317
                     /product="aldo-keto reductase family 1 member B1"
                     /calculated_mol_wt=36147
     Region          11..317
                     /region_name="AKR_SF"
                     /note="Aldo-keto reductase (AKR) superfamily; cl00470"
                     /db_xref="CDD:444925"
     Site            order(20..22,45,50,79,112,161..162,185,211..217,247,
                     262..265,270,273..274)
                     /site_type="active"
                     /db_xref="CDD:381296"
     Site            order(45,50,79,112)
                     /site_type="active"
                     /note="catalytic tetrad [active]"
                     /db_xref="CDD:381296"
     CDS             1..317
                     /gene="LOC104067839"
                     /coded_by="XM_009570633.2:87..1040"
                     /db_xref="GeneID:104067839"
ORIGIN      
        1 maspcvllsn kmkmpalglg twqappgkve evvkvaidtg yrlfdcayfy qneneignav
       61 qqkikegavk redlfivtkl wntfhekslv kvackkslaa lqldyldlyl mhypmgfkag
      121 eelhpmdekg msipsdtdfl dtweameelv dcglvkaigi snfnheqier llnkpglkyk
      181 pvnnqiechp yltqekliky cqskgiavta ysplgspnrp wakpgepmll edprikeiaa
      241 rhhktpaqvl irfliqrdvi vipksdkpqr vqenikvfdf elsekemdvi lsfnrnwrav
      301 pvlqavnhkd ypfkaey
//
LOCUS       XP_053917768             317 aa            linear   VRT 09-MAR-2023
DEFINITION  aldo-keto reductase family 1 member B1 [Cuculus canorus].
ACCESSION   XP_053917768
VERSION     XP_053917768.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061793.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..317
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..317
                     /product="aldo-keto reductase family 1 member B1"
                     /calculated_mol_wt=36147
     Region          11..317
                     /region_name="AKR_SF"
                     /note="Aldo-keto reductase (AKR) superfamily; cl00470"
                     /db_xref="CDD:444925"
     Site            order(20..22,45,50,79,112,161..162,185,211..217,247,
                     262..265,270,273..274)
                     /site_type="active"
                     /db_xref="CDD:381296"
     Site            order(45,50,79,112)
                     /site_type="active"
                     /note="catalytic tetrad [active]"
                     /db_xref="CDD:381296"
     CDS             1..317
                     /gene="LOC104067839"
                     /coded_by="XM_054061793.1:88..1041"
                     /db_xref="GeneID:104067839"
ORIGIN      
        1 maspcvllsn kmkmpalglg twqappgkve evvkvaidtg yrlfdcayfy qneneignav
       61 qqkikegavk redlfivtkl wntfhekslv kvackkslaa lqldyldlyl mhypmgfkag
      121 eelhpmdekg msipsdtdfl dtweameelv dcglvkaigi snfnheqier llnkpglkyk
      181 pvnnqiechp yltqekliky cqskgiavta ysplgspnrp wakpgepmll edprikeiaa
      241 rhhktpaqvl irfliqrdvi vipksdkpqr vqenikvfdf elsekemdvi lsfnrnwrav
      301 pvlqavnhkd ypfkaey
//
LOCUS       XP_053917781            1209 aa            linear   VRT 09-MAR-2023
DEFINITION  homeodomain-interacting protein kinase 2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053917781
VERSION     XP_053917781.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061806.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1209
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1209
                     /product="homeodomain-interacting protein kinase 2 isoform
                     X1"
                     /calculated_mol_wt=131957
     Region          188..546
                     /region_name="STKc_HIPK2"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Homeodomain-Interacting Protein Kinase 2; cd14227"
                     /db_xref="CDD:271129"
     Site            order(210..214,218,231,233,247,266,282..285,288,290..291,
                     329,331,333..334,336,351,354,364,366..369,371,408)
                     /site_type="active"
                     /db_xref="CDD:271129"
     Site            order(210..214,218,231,233,266,282..285,288,329,331,
                     333..334,336,351)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:271129"
     Site            order(247,290,329,331,354,364,366..369,371,408)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:271129"
     Site            350..371
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:271129"
     CDS             1..1209
                     /gene="HIPK2"
                     /coded_by="XM_054061806.1:139..3768"
                     /db_xref="GeneID:104058964"
ORIGIN      
        1 mapmyegmas hvqvfsphtl qssafcsvkk lkvepssnwd mtgygthskv ysqsknvqss
       61 qaaaaaavna slqipnpsip yeqtiifpas tghivvtstn stsgvvavsg qtlggphnlm
      121 rrstvslldt yqkcglkrks eeientssvq iieehppmiq nnasgatvat attstatskn
      181 sgsnsegdyq lvqhevlcsm tntyevlefl grgtfgqvvk cwkrgtneiv aikilknhps
      241 yarqgqievs ilarlstesa ddynfvraye cfqhknhtcl vfemleqnly dflkqnkfsp
      301 lplkyirpil qqvatalmkl kslglihadl kpenimlvdp srqpyrvkvi dfgsashvsk
      361 avcstylqsr yyrapeiilg lpfceaidmw slgcviaelf lgwplypgas eydqiryisq
      421 tqglpaeyll sagtkttrff nrdtdspypl wrlktpedhe aetgikskea rkyifncldd
      481 maqvrtlvnm ttdlegsdml vekadrrefi dllkkmltid adkritpiet lnhpfvtmth
      541 lldfphsthv kscfqnmeic krrvnmydtv nqsktpfith vapststnlt mtfnnqlntv
      601 hnqttnlapt sssatislan pevsilnyqs alyqpsaasm aavaqrsmpl qtgtaqicar
      661 pdpfqqaliv cppgfqglqa spskhagysv rmenavpivt qapgaqplqi qpgllaqqaw
      721 psgtqqillp pawqqltgva thtsvqhatv ipesmagtqp ladwrnthah gshynpimqq
      781 pallashvtl paaqpvnvgv ahvmrqppaa atstrkskqh qsaprnasty eisssqsiss
      841 pqrskrvken tpprcamvhn spacstsitc vwgdvatstt rerqrqtiii pdtpspavsv
      901 itissdtdee eeqkhaptst lskqrknvis cvtvhdspys dsssnnspyv qhragqnngn
      961 tydtkgvpet hcsgnprtii vpplktqase vlvecdslap vttshhsssy kskssstvts
     1021 tsghssgsss gavayrqqrp gahfqqqqpl nlsqaqqhit tdrtgshrrq qayitptiaq
     1081 apysfphnsp shgtvhphla aaaaahlptq phlytytapa algstgtvah lvasqgsarh
     1141 avqhttypas ivhqvpvsmg prvlpsptih psqyqaqfah qtyisaspas tvytgyplsp
     1201 tkvnqypyi
//
LOCUS       XP_053917788            1205 aa            linear   VRT 09-MAR-2023
DEFINITION  homeodomain-interacting protein kinase 2 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053917788
VERSION     XP_053917788.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061813.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1205
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1205
                     /product="homeodomain-interacting protein kinase 2 isoform
                     X2"
                     /calculated_mol_wt=131488
     Region          188..542
                     /region_name="STKc_HIPK2"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Homeodomain-Interacting Protein Kinase 2; cd14227"
                     /db_xref="CDD:271129"
     Site            order(210..214,218,231,233,247,266,282..285,288,290..291,
                     329,331,333..334,336,351,354,364,366..369,371,408)
                     /site_type="active"
                     /db_xref="CDD:271129"
     Site            order(210..214,218,231,233,266,282..285,288,329,331,
                     333..334,336,351)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:271129"
     Site            order(247,290,329,331,354,364,366..369,371,408)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:271129"
     Site            350..371
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:271129"
     CDS             1..1205
                     /gene="HIPK2"
                     /coded_by="XM_054061813.1:139..3756"
                     /db_xref="GeneID:104058964"
ORIGIN      
        1 mapmyegmas hvqvfsphtl qssafcsvkk lkvepssnwd mtgygthskv ysqsknvqss
       61 qaaaaaavna slqipnpsip yeqtiifpas tghivvtstn stsgvvavsg qtlggphnlm
      121 rrstvslldt yqkcglkrks eeientssvq iieehppmiq nnasgatvat attstatskn
      181 sgsnsegdyq lvqhevlcsm tntyevlefl grgtfgqvvk cwkrgtneiv aikilknhps
      241 yarqgqievs ilarlstesa ddynfvraye cfqhknhtcl vfemleqnly dflkqnkfsp
      301 lplkyirpil qqvatalmkl kslglihadl kpenimlvdp srqpyrvkvi dfgsashvsk
      361 avcstylqsr yyrapeiilg lpfceaidmw slgcviaelf lgwplypgas eydqiryisq
      421 tqglpaeyll sagtkttrff nrdtdspypl wrlktpedhe aetgikskea rkyifncldd
      481 maqvnmttdl egsdmlveka drrefidllk kmltidadkr itpietlnhp fvtmthlldf
      541 phsthvkscf qnmeickrrv nmydtvnqsk tpfithvaps tstnltmtfn nqlntvhnqt
      601 tnlaptsssa tislanpevs ilnyqsalyq psaasmaava qrsmplqtgt aqicarpdpf
      661 qqalivcppg fqglqaspsk hagysvrmen avpivtqapg aqplqiqpgl laqqawpsgt
      721 qqillppawq qltgvathts vqhatvipes magtqpladw rnthahgshy npimqqpall
      781 ashvtlpaaq pvnvgvahvm rqppaaatst rkskqhqsap rnastyeiss sqsisspqrs
      841 krvkentppr camvhnspac stsitcvwgd vatsttrerq rqtiiipdtp spavsvitis
      901 sdtdeeeeqk haptstlskq rknviscvtv hdspysdsss nnspyvqhra gqnngntydt
      961 kgvpethcsg nprtiivppl ktqasevlve cdslapvtts hhsssyksks sstvtstsgh
     1021 ssgsssgava yrqqrpgahf qqqqplnlsq aqqhittdrt gshrrqqayi tptiaqapys
     1081 fphnspshgt vhphlaaaaa ahlptqphly tytapaalgs tgtvahlvas qgsarhavqh
     1141 ttypasivhq vpvsmgprvl psptihpsqy qaqfahqtyi saspastvyt gyplsptkvn
     1201 qypyi
//
LOCUS       XP_053917794            1195 aa            linear   VRT 09-MAR-2023
DEFINITION  homeodomain-interacting protein kinase 2 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053917794
VERSION     XP_053917794.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061819.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1195
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1195
                     /product="homeodomain-interacting protein kinase 2 isoform
                     X3"
                     /calculated_mol_wt=130502
     Region          188..546
                     /region_name="STKc_HIPK2"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Homeodomain-Interacting Protein Kinase 2; cd14227"
                     /db_xref="CDD:271129"
     Site            order(210..214,218,231,233,247,266,282..285,288,290..291,
                     329,331,333..334,336,351,354,364,366..369,371,408)
                     /site_type="active"
                     /db_xref="CDD:271129"
     Site            order(210..214,218,231,233,266,282..285,288,329,331,
                     333..334,336,351)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:271129"
     Site            order(247,290,329,331,354,364,366..369,371,408)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:271129"
     Site            350..371
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:271129"
     Region          <649..>903
                     /region_name="Atrophin-1"
                     /note="Atrophin-1 family; pfam03154"
                     /db_xref="CDD:460830"
     CDS             1..1195
                     /gene="HIPK2"
                     /coded_by="XM_054061819.1:139..3726"
                     /db_xref="GeneID:104058964"
ORIGIN      
        1 mapmyegmas hvqvfsphtl qssafcsvkk lkvepssnwd mtgygthskv ysqsknvqss
       61 qaaaaaavna slqipnpsip yeqtiifpas tghivvtstn stsgvvavsg qtlggphnlm
      121 rrstvslldt yqkcglkrks eeientssvq iieehppmiq nnasgatvat attstatskn
      181 sgsnsegdyq lvqhevlcsm tntyevlefl grgtfgqvvk cwkrgtneiv aikilknhps
      241 yarqgqievs ilarlstesa ddynfvraye cfqhknhtcl vfemleqnly dflkqnkfsp
      301 lplkyirpil qqvatalmkl kslglihadl kpenimlvdp srqpyrvkvi dfgsashvsk
      361 avcstylqsr yyrapeiilg lpfceaidmw slgcviaelf lgwplypgas eydqiryisq
      421 tqglpaeyll sagtkttrff nrdtdspypl wrlktpedhe aetgikskea rkyifncldd
      481 maqvrtlvnm ttdlegsdml vekadrrefi dllkkmltid adkritpiet lnhpfvtmth
      541 lldfphsthv kscfqnmeic krrvnmydtv nqsktpfith vapststnlt mtfnnqlntv
      601 hnqttnlapt sssatislan pevsilnyqs alyqpsaasm aavaqrsmpl qtgtaqicar
      661 pdpfqqaliv cppgfqglqa spskhagysv rmenavpivt qapgaqplqi qpgllaqqaw
      721 psgtqqillp pawqqltgva thtsvqhatv ipesmagtqp ladwrnthah gshynpimqq
      781 pallashvtl paaqpvnvgv ahvmrqppaa atstrkskqh qsaprspqrs krvkentppr
      841 camvhnspac stsitcvwgd vatsttrerq rqtiiipdtp spavsvitis sdtdeeeeqk
      901 haptstlskq rknviscvtv hdspysdsss nnspyvqhra gqnngntydt kgvpethcsg
      961 nprtiivppl ktqasevlve cdslapvtts hhsssyksks sstvtstsgh ssgsssgava
     1021 yrqqrpgahf qqqqplnlsq aqqhittdrt gshrrqqayi tptiaqapys fphnspshgt
     1081 vhphlaaaaa ahlptqphly tytapaalgs tgtvahlvas qgsarhavqh ttypasivhq
     1141 vpvsmgprvl psptihpsqy qaqfahqtyi saspastvyt gyplsptkvn qypyi
//
LOCUS       XP_053917804            1178 aa            linear   VRT 09-MAR-2023
DEFINITION  homeodomain-interacting protein kinase 2 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053917804
VERSION     XP_053917804.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061829.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1178
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1178
                     /product="homeodomain-interacting protein kinase 2 isoform
                     X4"
                     /calculated_mol_wt=128720
     Region          188..546
                     /region_name="STKc_HIPK2"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Homeodomain-Interacting Protein Kinase 2; cd14227"
                     /db_xref="CDD:271129"
     Site            order(210..214,218,231,233,247,266,282..285,288,290..291,
                     329,331,333..334,336,351,354,364,366..369,371,408)
                     /site_type="active"
                     /db_xref="CDD:271129"
     Site            order(210..214,218,231,233,266,282..285,288,329,331,
                     333..334,336,351)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:271129"
     Site            order(247,290,329,331,354,364,366..369,371,408)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:271129"
     Site            350..371
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:271129"
     CDS             1..1178
                     /gene="HIPK2"
                     /coded_by="XM_054061829.1:139..3675"
                     /db_xref="GeneID:104058964"
ORIGIN      
        1 mapmyegmas hvqvfsphtl qssafcsvkk lkvepssnwd mtgygthskv ysqsknvqss
       61 qaaaaaavna slqipnpsip yeqtiifpas tghivvtstn stsgvvavsg qtlggphnlm
      121 rrstvslldt yqkcglkrks eeientssvq iieehppmiq nnasgatvat attstatskn
      181 sgsnsegdyq lvqhevlcsm tntyevlefl grgtfgqvvk cwkrgtneiv aikilknhps
      241 yarqgqievs ilarlstesa ddynfvraye cfqhknhtcl vfemleqnly dflkqnkfsp
      301 lplkyirpil qqvatalmkl kslglihadl kpenimlvdp srqpyrvkvi dfgsashvsk
      361 avcstylqsr yyrapeiilg lpfceaidmw slgcviaelf lgwplypgas eydqiryisq
      421 tqglpaeyll sagtkttrff nrdtdspypl wrlktpedhe aetgikskea rkyifncldd
      481 maqvrtlvnm ttdlegsdml vekadrrefi dllkkmltid adkritpiet lnhpfvtmth
      541 lldfphsthv kscfqnmeic krrvnmydtv nqsktpfith vapststnlt mtfnnqlntv
      601 hnqpsaasma avaqrsmplq tgtaqicarp dpfqqalivc ppgfqglqas pskhagysvr
      661 menavpivtq apgaqplqiq pgllaqqawp sgtqqillpp awqqltgvat htsvqhatvi
      721 pesmagtqpl adwrnthahg shynpimqqp allashvtlp aaqpvnvgva hvmrqppaaa
      781 tstrkskqhq saprnastye isssqsissp qrskrvkent pprcamvhns pacstsitcv
      841 wgdvatsttr erqrqtiiip dtpspavsvi tissdtdeee eqkhaptstl skqrknvisc
      901 vtvhdspysd sssnnspyvq hragqnngnt ydtkgvpeth csgnprtiiv pplktqasev
      961 lvecdslapv ttshhsssyk skssstvtst sghssgsssg avayrqqrpg ahfqqqqpln
     1021 lsqaqqhitt drtgshrrqq ayitptiaqa pysfphnsps hgtvhphlaa aaaahlptqp
     1081 hlytytapaa lgstgtvahl vasqgsarha vqhttypasi vhqvpvsmgp rvlpsptihp
     1141 sqyqaqfahq tyisaspast vytgyplspt kvnqypyi
//
LOCUS       XP_053917815            1174 aa            linear   VRT 09-MAR-2023
DEFINITION  homeodomain-interacting protein kinase 2 isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053917815
VERSION     XP_053917815.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061840.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1174
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1174
                     /product="homeodomain-interacting protein kinase 2 isoform
                     X5"
                     /calculated_mol_wt=128250
     Region          188..542
                     /region_name="STKc_HIPK2"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Homeodomain-Interacting Protein Kinase 2; cd14227"
                     /db_xref="CDD:271129"
     Site            order(210..214,218,231,233,247,266,282..285,288,290..291,
                     329,331,333..334,336,351,354,364,366..369,371,408)
                     /site_type="active"
                     /db_xref="CDD:271129"
     Site            order(210..214,218,231,233,266,282..285,288,329,331,
                     333..334,336,351)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:271129"
     Site            order(247,290,329,331,354,364,366..369,371,408)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:271129"
     Site            350..371
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:271129"
     CDS             1..1174
                     /gene="HIPK2"
                     /coded_by="XM_054061840.1:139..3663"
                     /db_xref="GeneID:104058964"
ORIGIN      
        1 mapmyegmas hvqvfsphtl qssafcsvkk lkvepssnwd mtgygthskv ysqsknvqss
       61 qaaaaaavna slqipnpsip yeqtiifpas tghivvtstn stsgvvavsg qtlggphnlm
      121 rrstvslldt yqkcglkrks eeientssvq iieehppmiq nnasgatvat attstatskn
      181 sgsnsegdyq lvqhevlcsm tntyevlefl grgtfgqvvk cwkrgtneiv aikilknhps
      241 yarqgqievs ilarlstesa ddynfvraye cfqhknhtcl vfemleqnly dflkqnkfsp
      301 lplkyirpil qqvatalmkl kslglihadl kpenimlvdp srqpyrvkvi dfgsashvsk
      361 avcstylqsr yyrapeiilg lpfceaidmw slgcviaelf lgwplypgas eydqiryisq
      421 tqglpaeyll sagtkttrff nrdtdspypl wrlktpedhe aetgikskea rkyifncldd
      481 maqvnmttdl egsdmlveka drrefidllk kmltidadkr itpietlnhp fvtmthlldf
      541 phsthvkscf qnmeickrrv nmydtvnqsk tpfithvaps tstnltmtfn nqlntvhnqp
      601 saasmaavaq rsmplqtgta qicarpdpfq qalivcppgf qglqaspskh agysvrmena
      661 vpivtqapga qplqiqpgll aqqawpsgtq qillppawqq ltgvathtsv qhatvipesm
      721 agtqpladwr nthahgshyn pimqqpalla shvtlpaaqp vnvgvahvmr qppaaatstr
      781 kskqhqsapr nastyeisss qsisspqrsk rvkentpprc amvhnspacs tsitcvwgdv
      841 atsttrerqr qtiiipdtps pavsvitiss dtdeeeeqkh aptstlskqr knviscvtvh
      901 dspysdsssn nspyvqhrag qnngntydtk gvpethcsgn prtiivpplk tqasevlvec
      961 dslapvttsh hsssykskss stvtstsghs sgsssgavay rqqrpgahfq qqqplnlsqa
     1021 qqhittdrtg shrrqqayit ptiaqapysf phnspshgtv hphlaaaaaa hlptqphlyt
     1081 ytapaalgst gtvahlvasq gsarhavqht typasivhqv pvsmgprvlp sptihpsqyq
     1141 aqfahqtyis aspastvytg yplsptkvnq ypyi
//
LOCUS       XP_053917830            1646 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger CCCH domain-containing protein 13 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053917830
VERSION     XP_053917830.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061855.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1646
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1646
                     /product="zinc finger CCCH domain-containing protein 13
                     isoform X1"
                     /calculated_mol_wt=193719
     Region          42..63
                     /region_name="zf-CCCH"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     pfam00642"
                     /db_xref="CDD:459885"
     Region          349..>582
                     /region_name="PRK12678"
                     /note="transcription termination factor Rho; Provisional"
                     /db_xref="CDD:237171"
     Region          544..>662
                     /region_name="U2AF_lg"
                     /note="U2 snRNP auxilliary factor, large subunit, splicing
                     factor; TIGR01642"
                     /db_xref="CDD:273727"
     CDS             1..1646
                     /gene="ZC3H13"
                     /coded_by="XM_054061855.1:215..5155"
                     /db_xref="GeneID:104056504"
ORIGIN      
        1 mskirrkvtv entktisdst srrpsvferl gpstgstaet qcrnwlktgn clygntcrfv
       61 hgpsprgkgy sssyrrsper ptgdlrermk nkrqdveaep qkrsteesss pvrkessrgr
      121 hrekedikit kertpeseee ngdwetnred sdngdvnydy dhelslemkr qkiqrelmkl
      181 eqenmekree ivikkeispe varsklspsp sprksskspk rrsspksssl askkekkast
      241 vssplldqqr sskstqskkk gprtpspppp vqeetplgkk hkekhkaker seekarevke
      301 rgreferhke kkekqrdpse sshrqkrsps padhsgsnss psreysppaa rrrqtsrapa
      361 ksttrkhnfs psrrsaspsg rhhspissrh hssssqsgss vqrhspsphr krtpspsyqr
      421 ttssparrss spypphsspq rkrspsrhrs pgrekgrhdr drtsqshdrr herrdetrgk
      481 rekereardd rdydqeqsss rdhrddresr dgrdrretrd nrdrretres rdtrdsrdtr
      541 dysrdtkdsr dqrdsrstrd shdyrdresr dahkkddqyq edsrsygrsh greessraea
      601 rndsrsdsrn esrsdrtgrs rgrgpelsdk gsrgtrgsqv dghsssgnyh dswesrssyp
      661 drdrydsreq ardssferrh gerdrrdnrd rdqrasspvr hqgrsddldr derreerrvd
      721 rsddrrdera rererererd rerererdre rerekerele rdrarerere rerdkdrdre
      781 rdrdrdhdre rererereke rerereerer erererdrer ererergrdr dkerdrqrdw
      841 ddkekgredr rdkrediree rssrdvheer kskkrhrnes spsprqspkr rrehspdsda
      901 ynsgddknek hrllsqvvrp qesrslspsh iteerqsrwk eeerksdrke ssrryeepef
      961 kdrvssadkq reqpdatess rsriqenlgh hpseerdtsd rmhddskkks kvqkkatkkk
     1021 kdddsgvery tnestaeesq vfspkkgqkk knlekkrkrs kgdsevsdee ivphhkkkkg
     1081 prtppvtkee lveapsekav aevpskredt tfsdwsdedv pergdivper stedshrksh
     1141 rmrgekveap hvtiddgphr kpvdqkrsss lgsnrshass rlrspsnesa hrsgddqtgr
     1201 krilhgssrd rdrdrdrekk sleitgerks ridqlkrgep srstssdrqd srshssrrss
     1261 pesdrqvhsr sgsfdsrerl qerdrhehdr ererdrregr qrdwdrdvdk dwprsrerer
     1321 lrerererek rreldrerdr qlpdtaerer drtldissqk esakhsetkl drdhekefdg
     1381 vgrdssasek ertdkdlgpl qgfedgneae kveslegged egkiddvqsl gsgageyepi
     1441 sddeldeila gdaekredqq edekmpgknp vdvidvdwss lmpkqpkepr epgaallkft
     1501 pgavmlrvgi skrlagpelf tkiretcqra lekpkdgenl fehelgalnm aallrkeera
     1561 gllsnlgpcc kalcfrrdsa irkqlmknek gatkqtytns aamdsdllrl slrlfkrktv
     1621 cqvpgqekte dskipqpaiq qevcvs
//
LOCUS       XP_053917840            1646 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger CCCH domain-containing protein 13 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053917840
VERSION     XP_053917840.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061865.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1646
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1646
                     /product="zinc finger CCCH domain-containing protein 13
                     isoform X1"
                     /calculated_mol_wt=193719
     Region          42..63
                     /region_name="zf-CCCH"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     pfam00642"
                     /db_xref="CDD:459885"
     Region          349..>582
                     /region_name="PRK12678"
                     /note="transcription termination factor Rho; Provisional"
                     /db_xref="CDD:237171"
     Region          544..>662
                     /region_name="U2AF_lg"
                     /note="U2 snRNP auxilliary factor, large subunit, splicing
                     factor; TIGR01642"
                     /db_xref="CDD:273727"
     CDS             1..1646
                     /gene="ZC3H13"
                     /coded_by="XM_054061865.1:212..5152"
                     /db_xref="GeneID:104056504"
ORIGIN      
        1 mskirrkvtv entktisdst srrpsvferl gpstgstaet qcrnwlktgn clygntcrfv
       61 hgpsprgkgy sssyrrsper ptgdlrermk nkrqdveaep qkrsteesss pvrkessrgr
      121 hrekedikit kertpeseee ngdwetnred sdngdvnydy dhelslemkr qkiqrelmkl
      181 eqenmekree ivikkeispe varsklspsp sprksskspk rrsspksssl askkekkast
      241 vssplldqqr sskstqskkk gprtpspppp vqeetplgkk hkekhkaker seekarevke
      301 rgreferhke kkekqrdpse sshrqkrsps padhsgsnss psreysppaa rrrqtsrapa
      361 ksttrkhnfs psrrsaspsg rhhspissrh hssssqsgss vqrhspsphr krtpspsyqr
      421 ttssparrss spypphsspq rkrspsrhrs pgrekgrhdr drtsqshdrr herrdetrgk
      481 rekereardd rdydqeqsss rdhrddresr dgrdrretrd nrdrretres rdtrdsrdtr
      541 dysrdtkdsr dqrdsrstrd shdyrdresr dahkkddqyq edsrsygrsh greessraea
      601 rndsrsdsrn esrsdrtgrs rgrgpelsdk gsrgtrgsqv dghsssgnyh dswesrssyp
      661 drdrydsreq ardssferrh gerdrrdnrd rdqrasspvr hqgrsddldr derreerrvd
      721 rsddrrdera rererererd rerererdre rerekerele rdrarerere rerdkdrdre
      781 rdrdrdhdre rererereke rerereerer erererdrer ererergrdr dkerdrqrdw
      841 ddkekgredr rdkrediree rssrdvheer kskkrhrnes spsprqspkr rrehspdsda
      901 ynsgddknek hrllsqvvrp qesrslspsh iteerqsrwk eeerksdrke ssrryeepef
      961 kdrvssadkq reqpdatess rsriqenlgh hpseerdtsd rmhddskkks kvqkkatkkk
     1021 kdddsgvery tnestaeesq vfspkkgqkk knlekkrkrs kgdsevsdee ivphhkkkkg
     1081 prtppvtkee lveapsekav aevpskredt tfsdwsdedv pergdivper stedshrksh
     1141 rmrgekveap hvtiddgphr kpvdqkrsss lgsnrshass rlrspsnesa hrsgddqtgr
     1201 krilhgssrd rdrdrdrekk sleitgerks ridqlkrgep srstssdrqd srshssrrss
     1261 pesdrqvhsr sgsfdsrerl qerdrhehdr ererdrregr qrdwdrdvdk dwprsrerer
     1321 lrerererek rreldrerdr qlpdtaerer drtldissqk esakhsetkl drdhekefdg
     1381 vgrdssasek ertdkdlgpl qgfedgneae kveslegged egkiddvqsl gsgageyepi
     1441 sddeldeila gdaekredqq edekmpgknp vdvidvdwss lmpkqpkepr epgaallkft
     1501 pgavmlrvgi skrlagpelf tkiretcqra lekpkdgenl fehelgalnm aallrkeera
     1561 gllsnlgpcc kalcfrrdsa irkqlmknek gatkqtytns aamdsdllrl slrlfkrktv
     1621 cqvpgqekte dskipqpaiq qevcvs
//
LOCUS       XP_053917846            1644 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger CCCH domain-containing protein 13 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053917846
VERSION     XP_053917846.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061871.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1644
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1644
                     /product="zinc finger CCCH domain-containing protein 13
                     isoform X2"
                     /calculated_mol_wt=193534
     Region          42..63
                     /region_name="zf-CCCH"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     pfam00642"
                     /db_xref="CDD:459885"
     Region          350..>582
                     /region_name="PRK12678"
                     /note="transcription termination factor Rho; Provisional"
                     /db_xref="CDD:237171"
     Region          544..>662
                     /region_name="U2AF_lg"
                     /note="U2 snRNP auxilliary factor, large subunit, splicing
                     factor; TIGR01642"
                     /db_xref="CDD:273727"
     CDS             1..1644
                     /gene="ZC3H13"
                     /coded_by="XM_054061871.1:215..5149"
                     /db_xref="GeneID:104056504"
ORIGIN      
        1 mskirrkvtv entktisdst srrpsvferl gpstgstaet qcrnwlktgn clygntcrfv
       61 hgpsprgkgy sssyrrsper ptgdlrermk nkrqdveaep qkrsteesss pvrkessrgr
      121 hrekedikit kertpeseee ngdwetnred sdngdvnydy dhelslemkr qkiqrelmkl
      181 eqenmekree ivikkeispe varsklspsp sprksskspk rrsspksssl askkekkast
      241 vssplldqqr sskstqskkk gprtpspppp vqeetplgkk hkekhkaker seekarevke
      301 rgreferhke kkekqrdpse sshrqkrsps padhsgsnss psreysppaa rrrqtsrapa
      361 ksttrkhnfs psrrsaspsg rhhspissrh hssssqsgss vqrhspsphr krtpspsyqr
      421 ttssparrss spypphsspq rkrspsrhrs pgrekgrhdr drtsqshdrr herrdetrgk
      481 rekereardd rdydqeqsss rdhrddresr dgrdrretrd nrdrretres rdtrdsrdtr
      541 dysrdtkdsr dqrdsrstrd shdyrdresr dahkkddqyq edsrsygrsh greessraea
      601 rndsrsdsrn esrsdrtgrs rgrgpelsdk gsrgtrgsqv dghsssgnyh dswesrssyp
      661 drdrydsreq ardssferrh gerdrrdnrd rdqrasspvr hqgrsddldr derreerrvd
      721 rsddrrdera rererererd rerererdre rerekerele rdrarerere rerdkdrdre
      781 rdrdrdhdre rererereke rerereerer erererdrer ererergrdr dkerdrqrdw
      841 ddkekgredr rdkrediree rssrdvheer kskkrhrnes spsprqspkr rrehspdsda
      901 ynsgddknek hrllsqvvrp qesrslspsh iteerqsrwk eeerksdrke ssrryeepef
      961 kdrvssadkq reqpdatess rsriqenlgh hpseerdtsd rmhddskkks kvqkkatkkk
     1021 kdddsgvery tnestaeesq vfspkkgqkk knlekkrkrs kgdsevsdee ivphhkkkkg
     1081 prtppvtkee lveapsekav aevpskredt tfsdwsdedv pergdivper stedshrksh
     1141 rmrgekveap hvtiddgphr kpvdqkrsss lgsnrshass rlrspsnesa hrsgddqtgr
     1201 krilhgssrd rdrdrdrekk sleitgerks ridqlkrgep srstssdrqd srshssrrss
     1261 pesdrqvhsr sgsfdsrerl qerdrhehdr ererdrregr qrdwdrdvdk dwprsrerer
     1321 lrerererek rreldrerdr qlpdtaerer drtldissqk esakhsetkl drdhekefdg
     1381 vgrdssasek ertdkdlgpl qgfedgneae kveslegged egkiddvqsl gsgageyepi
     1441 sddeldeila gdaekredqq edekmpdpvd vidvdwsslm pkqpkeprep gaallkftpg
     1501 avmlrvgisk rlagpelftk iretcqrale kpkdgenlfe helgalnmaa llrkeeragl
     1561 lsnlgpccka lcfrrdsair kqlmknekga tkqtytnsaa mdsdllrlsl rlfkrktvcq
     1621 vpgqekteds kipqpaiqqe vcvs
//
LOCUS       XP_053917854            1479 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger CCCH domain-containing protein 13 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053917854
VERSION     XP_053917854.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061879.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1479
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1479
                     /product="zinc finger CCCH domain-containing protein 13
                     isoform X3"
                     /calculated_mol_wt=174448
     Region          183..>415
                     /region_name="PRK12678"
                     /note="transcription termination factor Rho; Provisional"
                     /db_xref="CDD:237171"
     Region          377..>495
                     /region_name="U2AF_lg"
                     /note="U2 snRNP auxilliary factor, large subunit, splicing
                     factor; TIGR01642"
                     /db_xref="CDD:273727"
     CDS             1..1479
                     /gene="ZC3H13"
                     /coded_by="XM_054061879.1:367..4806"
                     /db_xref="GeneID:104056504"
ORIGIN      
        1 mkrqkiqrel mkleqenmek reeivikkei spevarskls pspsprkssk spkrrsspks
       61 sslaskkekk astvssplld qqrsskstqs kkkgprtpsp pppvqeetpl gkkhkekhka
      121 kerseekare vkergrefer hkekkekqrd psesshrqkr spspadhsgs nsspsreysp
      181 paarrrqtsr apaksttrkh nfspsrrsas psgrhhspis srhhssssqs gssvqrhsps
      241 phrkrtpsps yqrttsspar rssspypphs spqrkrspsr hrspgrekgr hdrdrtsqsh
      301 drrherrdet rgkrekerea rddrdydqeq sssrdhrddr esrdgrdrre trdnrdrret
      361 resrdtrdsr dtrdysrdtk dsrdqrdsrs trdshdyrdr esrdahkkdd qyqedsrsyg
      421 rshgreessr aearndsrsd srnesrsdrt grsrgrgpel sdkgsrgtrg sqvdghsssg
      481 nyhdswesrs sypdrdryds reqardssfe rrhgerdrrd nrdrdqrass pvrhqgrsdd
      541 ldrderreer rvdrsddrrd erarererer erdrererer drerereker elerdrarer
      601 erererdkdr drerdrdrdh drerererer ekerereree rererererd rererererg
      661 rdrdkerdrq rdwddkekgr edrrdkredi reerssrdvh eerkskkrhr nesspsprqs
      721 pkrrrehspd sdaynsgddk nekhrllsqv vrpqesrsls pshiteerqs rwkeeerksd
      781 rkessrryee pefkdrvssa dkqreqpdat essrsriqen lghhpseerd tsdrmhddsk
      841 kkskvqkkat kkkkdddsgv erytnestae esqvfspkkg qkkknlekkr krskgdsevs
      901 deeivphhkk kkgprtppvt keelveapse kavaevpskr edttfsdwsd edvpergdiv
      961 perstedshr kshrmrgekv eaphvtiddg phrkpvdqkr ssslgsnrsh assrlrspsn
     1021 esahrsgddq tgrkrilhgs srdrdrdrdr ekksleitge rksridqlkr gepsrstssd
     1081 rqdsrshssr rsspesdrqv hsrsgsfdsr erlqerdrhe hdrererdrr egrqrdwdrd
     1141 vdkdwprsre rerlrerere rekrreldre rdrqlpdtae rerdrtldis sqkesakhse
     1201 tkldrdheke fdgvgrdssa sekertdkdl gplqgfedgn eaekvesleg gedegkiddv
     1261 qslgsgagey episddelde ilagdaekre dqqedekmpg knpvdvidvd wsslmpkqpk
     1321 eprepgaall kftpgavmlr vgiskrlagp elftkiretc qralekpkdg enlfehelga
     1381 lnmaallrke eragllsnlg pcckalcfrr dsairkqlmk nekgatkqty tnsaamdsdl
     1441 lrlslrlfkr ktvcqvpgqe ktedskipqp aiqqevcvs
//
LOCUS       XP_053917867             862 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-secretase-activating protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053917867
VERSION     XP_053917867.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061892.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..862
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..862
                     /product="gamma-secretase-activating protein isoform X1"
                     /calculated_mol_wt=99421
     Region          20..503
                     /region_name="GSAP"
                     /note="gamma-secretase-activating protein and similar
                     proteins; cd23105"
                     /db_xref="CDD:438516"
     Region          648..755
                     /region_name="GSAP-16"
                     /note="gamma-Secretase-activating protein C-term;
                     pfam14959"
                     /db_xref="CDD:464405"
     CDS             1..862
                     /gene="GSAP"
                     /coded_by="XM_054061892.1:23..2611"
                     /db_xref="GeneID:104059681"
ORIGIN      
        1 mgarggarrr pgrsgagmll hllpefdlrr dvvpwlaarg waaaldtsen ssvlyivnve
       61 rngkiiytwk gnqrnthigl ydlqtkqneh lymferdlri iscsvnnert llavsfhqyt
      121 eeervsqllq svskyltlli eihpinnvrv lkavdscvrv qflyplegrs tmeshllvvs
      181 edkyieqfdi hvvaeeehkv viqnsgqipk arvaddlvwa qwdmmeqrlf yivpkesrst
      241 lkcvqfypde nsnsilesnl dmslndtqlk lvnfgydycq dqdvasksln lqvftskagg
      301 lcvccslasd ipdeitysvy flhkgysktf tvslerresh qlkevafmsl dyyvaaylpg
      361 qflhllniqh pdllcyslfl tgedaridml qncstqsprv stvldccvgs myavsisdsa
      421 llqflwnskq dserlaalhc allyfrctgd lemqiiwwis knlstchsfd piqefiiasl
      481 ycrmcpetpn ldkllpytsl ldwigiirgv tcatdiislp vlefqnskgf weklnsnles
      541 vkyaephlhy hnnvlrrewr nlseqieert ttaylrnvfe narkvlshld tldseerlvp
      601 lfqeedyqqq llmglmvaql kdhlmrhlqy vgkkkidqiv ldyvanllnl vhrimkevwr
      661 ryqlhscilc fdergsagef avfhvmsril eaangmcmpl ppgfhtlhlg lgvrclplht
      721 llhyidigvl hltetcvrkl lkdlddtekn eklklsivmr lpealglkvr qfwnhpinan
      781 liaqkyvkll leklekrqcs rplperlsvp meflplnylt nmlaeienqg ghpyekrdhv
      841 nvrfveetal khtmmllglk ys
//
LOCUS       XP_053917878             843 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-secretase-activating protein isoform X2 [Cuculus canorus].
ACCESSION   XP_053917878
VERSION     XP_053917878.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061903.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..843
                     /product="gamma-secretase-activating protein isoform X2"
                     /calculated_mol_wt=97210
     Region          20..484
                     /region_name="GSAP"
                     /note="gamma-secretase-activating protein and similar
                     proteins; cd23105"
                     /db_xref="CDD:438516"
     Region          629..736
                     /region_name="GSAP-16"
                     /note="gamma-Secretase-activating protein C-term;
                     pfam14959"
                     /db_xref="CDD:464405"
     CDS             1..843
                     /gene="GSAP"
                     /coded_by="XM_054061903.1:23..2554"
                     /db_xref="GeneID:104059681"
ORIGIN      
        1 mgarggarrr pgrsgagmll hllpefdlrr dvvpwlaarg waaaldtsen ssvlyivnve
       61 rngkiiytwk hlymferdlr iiscsvnner tllavsfhqy teeervsqll qsvskyltll
      121 ieihpinnvr vlkavdscvr vqflyplegr stmeshllvv sedkyieqfd ihvvaeeehk
      181 vviqnsgqip karvaddlvw aqwdmmeqrl fyivpkesrs tlkcvqfypd ensnsilesn
      241 ldmslndtql klvnfgydyc qdqdvasksl nlqvftskag glcvccslas dipdeitysv
      301 yflhkgyskt ftvslerres hqlkevafms ldyyvaaylp gqflhllniq hpdllcyslf
      361 ltgedaridm lqncstqspr vstvldccvg smyavsisds allqflwnsk qdserlaalh
      421 callyfrctg dlemqiiwwi sknlstchsf dpiqefiias lycrmcpetp nldkllpyts
      481 lldwigiirg vtcatdiisl pvlefqnskg fweklnsnle svkyaephlh yhnnvlrrew
      541 rnlseqieer tttaylrnvf enarkvlshl dtldseerlv plfqeedyqq qllmglmvaq
      601 lkdhlmrhlq yvgkkkidqi vldyvanlln lvhrimkevw rryqlhscil cfdergsage
      661 favfhvmsri leaangmcmp lppgfhtlhl glgvrclplh tllhyidigv lhltetcvrk
      721 llkdlddtek neklklsivm rlpealglkv rqfwnhpina nliaqkyvkl lleklekrqc
      781 srplperlsv pmeflplnyl tnmlaeienq gghpyekrdh vnvrfveeta lkhtmmllgl
      841 kys
//
LOCUS       XP_009559680             484 aa            linear   VRT 09-MAR-2023
DEFINITION  fibroleukin [Cuculus canorus].
ACCESSION   XP_009559680
VERSION     XP_009559680.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009561385.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009559680.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..484
                     /product="fibroleukin"
                     /calculated_mol_wt=55495
     Region          <68..>223
                     /region_name="HEC1"
                     /note="Chromosome segregation protein NDC80, interacts
                     with SMC proteins [Cell cycle control, cell division,
                     chromosome partitioning]; COG5185"
                     /db_xref="CDD:444066"
     Region          256..480
                     /region_name="FReD"
                     /note="Fibrinogen-related domains (FReDs); C terminal
                     globular domain of fibrinogen. Fibrinogen is involved in
                     blood clotting, being activated by thrombin to assemble
                     into fibrin clots. The N-termini of 2 times 3 chains come
                     together to form a globular...; cd00087"
                     /db_xref="CDD:238040"
     Site            374
                     /site_type="other"
                     /note="gamma-gamma dimer interface [polypeptide binding]"
                     /db_xref="CDD:238040"
     Site            order(407,409,411)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238040"
     Site            order(416,419..420,429..430)
                     /site_type="active"
                     /note="polymerization pocket [active]"
                     /db_xref="CDD:238040"
     CDS             1..484
                     /gene="FGL2"
                     /coded_by="XM_009561385.2:35..1489"
                     /db_xref="GeneID:104059682"
ORIGIN      
        1 mmqalppise nsvgslitpr leaalikfhf yilphtasfs akmklllylf llktallavt
       61 nvfavvlede edakegkvte tcpiklktnr kcdegedcpy qinlppmtmq lpkefrllek
      121 tlkevqtlke avnklkkccq dcklqaddnr erdssneflp pnaealaens eiqdnrvkel
      181 qskvnrmats lknaknqiqt lqgrlekmsl inmnnvehyv dskvanltfv vnsldnkcst
      241 kcpamqpkpv iqimqrdcgd hytagrrsng iyrispdprn asfevycdmq tqgggwtvlq
      301 rrqdgstnfn rtwndykngf gnlsrefwlg ndkihlltks qemqlriele dfdgireyak
      361 yehfyvaney lkyrlsvhgy sgtagdalhy skhynhdqkf fttpdkdndr ypsgncgayy
      421 ssgwwfdacl sanlngkyyh kkykgvrngi fwgtwhgmsd gipsgyrqaf ksvkimirpk
      481 sfvr
//
LOCUS       XP_053917893             383 aa            linear   VRT 09-MAR-2023
DEFINITION  tumor necrosis factor receptor superfamily member 19L [Cuculus
            canorus].
ACCESSION   XP_053917893
VERSION     XP_053917893.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061918.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..383
                     /product="tumor necrosis factor receptor superfamily
                     member 19L"
                     /calculated_mol_wt=41125
     Region          37..121
                     /region_name="TNFRSF"
                     /note="Tumor necrosis factor receptor superfamily
                     (TNFRSF); cl22855"
                     /db_xref="CDD:473981"
     Region          60..98
                     /region_name="CRD2"
                     /note="CRD2 [structural motif]"
                     /db_xref="CDD:276900"
     Region          172..206
                     /region_name="RELT"
                     /note="Tumour necrosis factor receptor superfamily member
                     19; pfam12606"
                     /db_xref="CDD:403713"
     CDS             1..383
                     /gene="RELT"
                     /coded_by="XM_054061918.1:86..1237"
                     /db_xref="GeneID:104064210"
ORIGIN      
        1 mkrcrmwwwl isilavlsgp smgagscgpq eyetlgcppg eepagvcgsa pdlvrtcrac
       61 spgtfspggv scsnhtrcwa rnrvlvapgt pltdsrcgac lpgfyspege reswgrclpc
      121 ttaprstpgc pgrrrarspe tlgqmvrnng twvtmmgeee eeeeeaaaqa gvltivpvfc
      181 amgllgilvc nllkkkgyhc taskdprpis tssssiyhle danedtigvl vrliaekken
      241 aavleellke hhdqqlmpps gctspnklhf lpqfppacqh qqhlhtvqgl apcarcsqkk
      301 wpevlpllna tkvlkprgrp gevtifsvgr frvsripelr seaqgeplrg tlpagsemqp
      361 lclkstdaps eltpglgaas agr
//
LOCUS       XP_053917906             235 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM168A isoform X1 [Cuculus canorus].
ACCESSION   XP_053917906
VERSION     XP_053917906.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061931.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..235
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..235
                     /product="protein FAM168A isoform X1"
                     /calculated_mol_wt=24962
     Region          1..235
                     /region_name="TCRP1"
                     /note="Tongue Cancer Chemotherapy Resistant Protein 1;
                     pfam14944"
                     /db_xref="CDD:434335"
     CDS             1..235
                     /gene="FAM168A"
                     /coded_by="XM_054061931.1:160..867"
                     /db_xref="GeneID:104064115"
ORIGIN      
        1 mnpvyspvqp gapygnpknm aytgyptgyp taapaynpnm yptsspgyap atllmkqawp
       61 qtssscatdg tfhlpvdtgt enrtyqassa afrytagtpy kvpptqsnna pppyspspnp
      121 yqtamypirs aypqqnlytq gayytqpvya aqphvihhtt vvqpnsipsa iypapvaapr
      181 tngvamgmva gttmamsagt llttpqhtai gahpvsvpty raqgtptysy vpphw
//
LOCUS       XP_053917915             235 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM168A isoform X1 [Cuculus canorus].
ACCESSION   XP_053917915
VERSION     XP_053917915.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061940.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..235
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..235
                     /product="protein FAM168A isoform X1"
                     /calculated_mol_wt=24962
     Region          1..235
                     /region_name="TCRP1"
                     /note="Tongue Cancer Chemotherapy Resistant Protein 1;
                     pfam14944"
                     /db_xref="CDD:434335"
     CDS             1..235
                     /gene="FAM168A"
                     /coded_by="XM_054061940.1:195..902"
                     /db_xref="GeneID:104064115"
ORIGIN      
        1 mnpvyspvqp gapygnpknm aytgyptgyp taapaynpnm yptsspgyap atllmkqawp
       61 qtssscatdg tfhlpvdtgt enrtyqassa afrytagtpy kvpptqsnna pppyspspnp
      121 yqtamypirs aypqqnlytq gayytqpvya aqphvihhtt vvqpnsipsa iypapvaapr
      181 tngvamgmva gttmamsagt llttpqhtai gahpvsvpty raqgtptysy vpphw
//
LOCUS       XP_053917921             235 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM168A isoform X1 [Cuculus canorus].
ACCESSION   XP_053917921
VERSION     XP_053917921.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061946.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..235
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..235
                     /product="protein FAM168A isoform X1"
                     /calculated_mol_wt=24962
     Region          1..235
                     /region_name="TCRP1"
                     /note="Tongue Cancer Chemotherapy Resistant Protein 1;
                     pfam14944"
                     /db_xref="CDD:434335"
     CDS             1..235
                     /gene="FAM168A"
                     /coded_by="XM_054061946.1:42..749"
                     /db_xref="GeneID:104064115"
ORIGIN      
        1 mnpvyspvqp gapygnpknm aytgyptgyp taapaynpnm yptsspgyap atllmkqawp
       61 qtssscatdg tfhlpvdtgt enrtyqassa afrytagtpy kvpptqsnna pppyspspnp
      121 yqtamypirs aypqqnlytq gayytqpvya aqphvihhtt vvqpnsipsa iypapvaapr
      181 tngvamgmva gttmamsagt llttpqhtai gahpvsvpty raqgtptysy vpphw
//
LOCUS       XP_053917929             193 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM168A isoform X2 [Cuculus canorus].
ACCESSION   XP_053917929
VERSION     XP_053917929.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061954.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..193
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..193
                     /product="protein FAM168A isoform X2"
                     /calculated_mol_wt=20389
     Region          1..193
                     /region_name="TCRP1"
                     /note="Tongue Cancer Chemotherapy Resistant Protein 1;
                     pfam14944"
                     /db_xref="CDD:434335"
     CDS             1..193
                     /gene="FAM168A"
                     /coded_by="XM_054061954.1:160..741"
                     /db_xref="GeneID:104064115"
ORIGIN      
        1 mnpvyspvqp gapygnpknm aytgyptgyp taapaynpnm yptsspgyap gytagtpykv
       61 pptqsnnapp pyspspnpyq tamypirsay pqqnlytqga yytqpvyaaq phvihhttvv
      121 qpnsipsaiy papvaaprtn gvamgmvagt tmamsagtll ttpqhtaiga hpvsvptyra
      181 qgtptysyvp phw
//
LOCUS       XP_053917940             235 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM168A isoform X1 [Cuculus canorus].
ACCESSION   XP_053917940
VERSION     XP_053917940.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061965.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..235
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..235
                     /product="protein FAM168A isoform X1"
                     /calculated_mol_wt=24962
     Region          1..235
                     /region_name="TCRP1"
                     /note="Tongue Cancer Chemotherapy Resistant Protein 1;
                     pfam14944"
                     /db_xref="CDD:434335"
     CDS             1..235
                     /gene="FAM168A"
                     /coded_by="XM_054061965.1:158..865"
                     /db_xref="GeneID:104064115"
ORIGIN      
        1 mnpvyspvqp gapygnpknm aytgyptgyp taapaynpnm yptsspgyap atllmkqawp
       61 qtssscatdg tfhlpvdtgt enrtyqassa afrytagtpy kvpptqsnna pppyspspnp
      121 yqtamypirs aypqqnlytq gayytqpvya aqphvihhtt vvqpnsipsa iypapvaapr
      181 tngvamgmva gttmamsagt llttpqhtai gahpvsvpty raqgtptysy vpphw
//
LOCUS       XP_053917950             193 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM168A isoform X2 [Cuculus canorus].
ACCESSION   XP_053917950
VERSION     XP_053917950.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061975.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..193
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..193
                     /product="protein FAM168A isoform X2"
                     /calculated_mol_wt=20389
     Region          1..193
                     /region_name="TCRP1"
                     /note="Tongue Cancer Chemotherapy Resistant Protein 1;
                     pfam14944"
                     /db_xref="CDD:434335"
     CDS             1..193
                     /gene="FAM168A"
                     /coded_by="XM_054061975.1:160..741"
                     /db_xref="GeneID:104064115"
ORIGIN      
        1 mnpvyspvqp gapygnpknm aytgyptgyp taapaynpnm yptsspgyap gytagtpykv
       61 pptqsnnapp pyspspnpyq tamypirsay pqqnlytqga yytqpvyaaq phvihhttvv
      121 qpnsipsaiy papvaaprtn gvamgmvagt tmamsagtll ttpqhtaiga hpvsvptyra
      181 qgtptysyvp phw
//
LOCUS       XP_053917961            1217 aa            linear   VRT 09-MAR-2023
DEFINITION  guanine nucleotide exchange factor DBS isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053917961
VERSION     XP_053917961.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061986.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1217
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1217
                     /product="guanine nucleotide exchange factor DBS isoform
                     X1"
                     /calculated_mol_wt=137598
     Region          76..205
                     /region_name="SEC14"
                     /note="Domain in homologues of a S. cerevisiae
                     phosphatidylinositol transfer protein (Sec14p);
                     smart00516"
                     /db_xref="CDD:214706"
     Region          340..538
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            441..446
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          616..793
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(622,626,723,745..746,749..750,752..753,756..757,
                     760..761,764,789,793)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          800..931
                     /region_name="PH_Dbs"
                     /note="DBL's big sister protein pleckstrin homology (PH)
                     domain; cd01227"
                     /db_xref="CDD:269934"
     Site            order(870,872)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:269934"
     Region          1118..1172
                     /region_name="SH3_DBS"
                     /note="Src homology 3 domain of DBL's Big Sister (DBS), a
                     guanine nucleotide exchange factor; cd11857"
                     /db_xref="CDD:212791"
     Site            order(1123,1125,1128,1132,1150..1151,1166,1168..1169)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212791"
     CDS             1..1217
                     /gene="MCF2L"
                     /coded_by="XM_054061986.1:19..3672"
                     /db_xref="GeneID:104056612"
ORIGIN      
        1 msqrrllreg heshfrilpr fiqilhgrrh srnnprqics deimhqdivp lyaadiqdql
       61 kkqfaylsgg rggggcpvit fpeypafsei pekefqnvlt yltsipslqd agigfilvid
      121 rrqdkwtsvk asilriaasf pgnlqlvlvl rptgffhral sdiafkfnkd efkmkvpiim
      181 lgsvselqgy idktqltedl ggtldychnr wlsrrtaieg faqkvkqtaq ilqsfgtela
      241 etelpndvqs tsfllathte kkdkmkedir lalqqgddil ggitkpvten peyklnqdql
      301 dnqttierll aqlhetetaf defwikhqqk leqclrlrnf eqnfrevkaa ldivserlsa
      361 ftdvgnscsh vehilsdlan feekscetia karmlasegd afiqsnhyav dsilpkcsel
      421 hhlcdaltte teqrrnllnk slelhsllek smkwcdegiy llasqpvdkc qsqdgaesal
      481 qeiekfldtg tgnkikelnk iyreyahiln ddlkehvqkv fqkqesmeem fqkrqvslkk
      541 laakqtrpvq pvaprpeafv kspctspglq refvsnsess alqrvnyrrg ksemtelhqs
      601 rggsamdeee nlavlrqhvi nelieteray veellcvleg yaaemdnplm ahlippelqn
      661 kkdilfgnme eiyhfhnrif lreleyyvey pelvgrcfld qmedfqiyek ycqnkprses
      721 lwrqfsdsvf fqecqrkldh klsldsyllk pvqritkyql llkemlkysk ncegaedlqe
      781 altsilgilk avndsmhqia itgydgnlne lgkllmqgsf svwtdhkkgh skvkdlarfk
      841 pmqrhlflhe kavlfckkre engegyekap sysykhslnm aavgitenvk gdakkfeiwy
      901 nareevyiiq aptpevkatw vneirkvlts qlqacreasq hrtlehtqsl plptstctsp
      961 srnhirntkk meerkadlas legygttvap kypekgkddt sstsecsvls kksftlqgft
     1021 nlksqketpp psaksqtlpm illtgpaspt spdkkakrhe vvsdptpfgl rgwaktshsl
     1081 daseendgws saedplnssd aeeegggggg emkltpgkyt vvtdyekgva eeftmksgdl
     1141 vqliregedg lwyvknlstg regwipannl lmlignsksa qslsssesgt asstlstsss
     1201 csdscnasst sfsdikg
//
LOCUS       XP_053917971            1237 aa            linear   VRT 09-MAR-2023
DEFINITION  guanine nucleotide exchange factor DBS isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053917971
VERSION     XP_053917971.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054061996.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1237
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1237
                     /product="guanine nucleotide exchange factor DBS isoform
                     X2"
                     /calculated_mol_wt=139595
     Region          95..224
                     /region_name="SEC14"
                     /note="Domain in homologues of a S. cerevisiae
                     phosphatidylinositol transfer protein (Sec14p);
                     smart00516"
                     /db_xref="CDD:214706"
     Region          359..557
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            460..465
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          635..812
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(641,645,742,764..765,768..769,771..772,775..776,
                     779..780,783,808,812)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          819..950
                     /region_name="PH_Dbs"
                     /note="DBL's big sister protein pleckstrin homology (PH)
                     domain; cd01227"
                     /db_xref="CDD:269934"
     Site            order(889,891)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:269934"
     Region          1138..1192
                     /region_name="SH3_DBS"
                     /note="Src homology 3 domain of DBL's Big Sister (DBS), a
                     guanine nucleotide exchange factor; cd11857"
                     /db_xref="CDD:212791"
     Site            order(1143,1145,1148,1152,1170..1171,1186,1188..1189)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212791"
     CDS             1..1237
                     /gene="MCF2L"
                     /coded_by="XM_054061996.1:70..3783"
                     /db_xref="GeneID:104056612"
ORIGIN      
        1 msdywywrli lcketgscnc fatanqsnee keedtnhqvv vsdimqlvqd kqevpestad
       61 eimhqdivpl yaadiqdqlk kqfaylsggr ggggcpvitf peypafseip ekefqnvlty
      121 ltsipslqda gigfilvidr rqdkwtsvka silriaasfp gnlqlvlvlr ptgffhrals
      181 diafkfnkde fkmkvpiiml gsvselqgyi dktqltedlg gtldychnrw lsrrtaiegf
      241 aqkvkqtaqi lqsfgtelae telpndvqst sfllathtek kdkmkedirl alqqgddilg
      301 gitkpvtenp eyklnqdqld nqttierlla qlhetetafd efwikhqqkl eqclrlrnfe
      361 qnfrevkaal divserlsaf tdvgnscshv ehilsdlanf eekscetiak armlasegda
      421 fiqsnhyavd silpkcselh hlcdalttet eqrrnllnks lelhslleks mkwcdegiyl
      481 lasqpvdkcq sqdgaesalq eiekfldtgt gnkikelnki yreyahilnd dlkehvqkvf
      541 qkqesmeemf qkrqvslkkl aakqtrpvqp vaprpeafvk spctspglqr efvsnsessa
      601 lqrvnyrrgk semtelhqsr ggsamdeeen lavlrqhvin elieterayv eellcvlegy
      661 aaemdnplma hlippelqnk kdilfgnmee iyhfhnrifl releyyveyp elvgrcfldq
      721 medfqiyeky cqnkprsesl wrqfsdsvff qecqrkldhk lsldsyllkp vqritkyqll
      781 lkemlkyskn cegaedlqea ltsilgilka vndsmhqiai tgydgnlnel gkllmqgsfs
      841 vwtdhkkghs kvkdlarfkp mqrhlflhek avlfckkree ngegyekaps ysykhslnma
      901 avgitenvkg dakkfeiwyn areevyiiqa ptpevkatwv neirkvltsq lqacreasqh
      961 rtlehtqslp lptstctssp srnhirntkk meerkadlas legygttvap kypekgkddt
     1021 sstsecsvls kksftlqgft nlksqketpp psaksqtlpm illtgpaspt spdkkakrhe
     1081 vvsdptpfgl rgwaktshsl daseendgws saedplnssd aeeegggggg emkltpgkyt
     1141 vvtdyekgva eeftmksgdl vqliregedg lwyvknlstg regwipannl lmlignsksa
     1201 qslsssesgt asstlstsss csdscnasst sfsdikg
//
LOCUS       XP_053917980            1236 aa            linear   VRT 09-MAR-2023
DEFINITION  guanine nucleotide exchange factor DBS isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053917980
VERSION     XP_053917980.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062005.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1236
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1236
                     /product="guanine nucleotide exchange factor DBS isoform
                     X3"
                     /calculated_mol_wt=139508
     Region          95..224
                     /region_name="SEC14"
                     /note="Domain in homologues of a S. cerevisiae
                     phosphatidylinositol transfer protein (Sec14p);
                     smart00516"
                     /db_xref="CDD:214706"
     Region          359..557
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            460..465
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          635..812
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(641,645,742,764..765,768..769,771..772,775..776,
                     779..780,783,808,812)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          819..950
                     /region_name="PH_Dbs"
                     /note="DBL's big sister protein pleckstrin homology (PH)
                     domain; cd01227"
                     /db_xref="CDD:269934"
     Site            order(889,891)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:269934"
     Region          1137..1191
                     /region_name="SH3_DBS"
                     /note="Src homology 3 domain of DBL's Big Sister (DBS), a
                     guanine nucleotide exchange factor; cd11857"
                     /db_xref="CDD:212791"
     Site            order(1142,1144,1147,1151,1169..1170,1185,1187..1188)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212791"
     CDS             1..1236
                     /gene="MCF2L"
                     /coded_by="XM_054062005.1:43..3753"
                     /db_xref="GeneID:104056612"
ORIGIN      
        1 msdywywrli lcketgscnc fatanqsnee keedtnhqvv vsdimqlvqd kqevpestad
       61 eimhqdivpl yaadiqdqlk kqfaylsggr ggggcpvitf peypafseip ekefqnvlty
      121 ltsipslqda gigfilvidr rqdkwtsvka silriaasfp gnlqlvlvlr ptgffhrals
      181 diafkfnkde fkmkvpiiml gsvselqgyi dktqltedlg gtldychnrw lsrrtaiegf
      241 aqkvkqtaqi lqsfgtelae telpndvqst sfllathtek kdkmkedirl alqqgddilg
      301 gitkpvtenp eyklnqdqld nqttierlla qlhetetafd efwikhqqkl eqclrlrnfe
      361 qnfrevkaal divserlsaf tdvgnscshv ehilsdlanf eekscetiak armlasegda
      421 fiqsnhyavd silpkcselh hlcdalttet eqrrnllnks lelhslleks mkwcdegiyl
      481 lasqpvdkcq sqdgaesalq eiekfldtgt gnkikelnki yreyahilnd dlkehvqkvf
      541 qkqesmeemf qkrqvslkkl aakqtrpvqp vaprpeafvk spctspglqr efvsnsessa
      601 lqrvnyrrgk semtelhqsr ggsamdeeen lavlrqhvin elieterayv eellcvlegy
      661 aaemdnplma hlippelqnk kdilfgnmee iyhfhnrifl releyyveyp elvgrcfldq
      721 medfqiyeky cqnkprsesl wrqfsdsvff qecqrkldhk lsldsyllkp vqritkyqll
      781 lkemlkyskn cegaedlqea ltsilgilka vndsmhqiai tgydgnlnel gkllmqgsfs
      841 vwtdhkkghs kvkdlarfkp mqrhlflhek avlfckkree ngegyekaps ysykhslnma
      901 avgitenvkg dakkfeiwyn areevyiiqa ptpevkatwv neirkvltsq lqacreasqh
      961 rtlehtqslp lptstctsps rnhirntkkm eerkadlasl egygttvapk ypekgkddts
     1021 stsecsvlsk ksftlqgftn lksqketppp saksqtlpmi lltgpaspts pdkkakrhev
     1081 vsdptpfglr gwaktshsld aseendgwss aedplnssda eeegggggge mkltpgkytv
     1141 vtdyekgvae eftmksgdlv qliregedgl wyvknlstgr egwipannll mlignsksaq
     1201 slsssesgta sstlstsssc sdscnassts fsdikg
//
LOCUS       XP_053917990            1189 aa            linear   VRT 09-MAR-2023
DEFINITION  guanine nucleotide exchange factor DBS isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053917990
VERSION     XP_053917990.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062015.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1189
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1189
                     /product="guanine nucleotide exchange factor DBS isoform
                     X4"
                     /calculated_mol_wt=134536
     Region          76..205
                     /region_name="SEC14"
                     /note="Domain in homologues of a S. cerevisiae
                     phosphatidylinositol transfer protein (Sec14p);
                     smart00516"
                     /db_xref="CDD:214706"
     Region          340..538
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            441..446
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          616..793
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(622,626,723,745..746,749..750,752..753,756..757,
                     760..761,764,789,793)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          800..931
                     /region_name="PH_Dbs"
                     /note="DBL's big sister protein pleckstrin homology (PH)
                     domain; cd01227"
                     /db_xref="CDD:269934"
     Site            order(870,872)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:269934"
     Region          1090..1144
                     /region_name="SH3_DBS"
                     /note="Src homology 3 domain of DBL's Big Sister (DBS), a
                     guanine nucleotide exchange factor; cd11857"
                     /db_xref="CDD:212791"
     Site            order(1095,1097,1100,1104,1122..1123,1138,1140..1141)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212791"
     CDS             1..1189
                     /gene="MCF2L"
                     /coded_by="XM_054062015.1:19..3588"
                     /db_xref="GeneID:104056612"
ORIGIN      
        1 msqrrllreg heshfrilpr fiqilhgrrh srnnprqics deimhqdivp lyaadiqdql
       61 kkqfaylsgg rggggcpvit fpeypafsei pekefqnvlt yltsipslqd agigfilvid
      121 rrqdkwtsvk asilriaasf pgnlqlvlvl rptgffhral sdiafkfnkd efkmkvpiim
      181 lgsvselqgy idktqltedl ggtldychnr wlsrrtaieg faqkvkqtaq ilqsfgtela
      241 etelpndvqs tsfllathte kkdkmkedir lalqqgddil ggitkpvten peyklnqdql
      301 dnqttierll aqlhetetaf defwikhqqk leqclrlrnf eqnfrevkaa ldivserlsa
      361 ftdvgnscsh vehilsdlan feekscetia karmlasegd afiqsnhyav dsilpkcsel
      421 hhlcdaltte teqrrnllnk slelhsllek smkwcdegiy llasqpvdkc qsqdgaesal
      481 qeiekfldtg tgnkikelnk iyreyahiln ddlkehvqkv fqkqesmeem fqkrqvslkk
      541 laakqtrpvq pvaprpeafv kspctspglq refvsnsess alqrvnyrrg ksemtelhqs
      601 rggsamdeee nlavlrqhvi nelieteray veellcvleg yaaemdnplm ahlippelqn
      661 kkdilfgnme eiyhfhnrif lreleyyvey pelvgrcfld qmedfqiyek ycqnkprses
      721 lwrqfsdsvf fqecqrkldh klsldsyllk pvqritkyql llkemlkysk ncegaedlqe
      781 altsilgilk avndsmhqia itgydgnlne lgkllmqgsf svwtdhkkgh skvkdlarfk
      841 pmqrhlflhe kavlfckkre engegyekap sysykhslnm aavgitenvk gdakkfeiwy
      901 nareevyiiq aptpevkatw vneirkvlts qlqacreasq hrtlehtqsl plptstctss
      961 psrnhirntk kmeerkadla slegygttva pkypekgket pppsaksqtl pmilltgpas
     1021 ptspdkkakr hevvsdptpf glrgwaktsh sldaseendg wssaedplns sdaeeegggg
     1081 ggemkltpgk ytvvtdyekg vaeeftmksg dlvqlirege dglwyvknls tgregwipan
     1141 nllmlignsk saqslssses gtasstlsts sscsdscnas stsfsdikg
//
LOCUS       XP_053917997            1188 aa            linear   VRT 09-MAR-2023
DEFINITION  guanine nucleotide exchange factor DBS isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053917997
VERSION     XP_053917997.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062022.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1188
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1188
                     /product="guanine nucleotide exchange factor DBS isoform
                     X5"
                     /calculated_mol_wt=134449
     Region          76..205
                     /region_name="SEC14"
                     /note="Domain in homologues of a S. cerevisiae
                     phosphatidylinositol transfer protein (Sec14p);
                     smart00516"
                     /db_xref="CDD:214706"
     Region          340..538
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            441..446
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          616..793
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(622,626,723,745..746,749..750,752..753,756..757,
                     760..761,764,789,793)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          800..931
                     /region_name="PH_Dbs"
                     /note="DBL's big sister protein pleckstrin homology (PH)
                     domain; cd01227"
                     /db_xref="CDD:269934"
     Site            order(870,872)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:269934"
     Region          1089..1143
                     /region_name="SH3_DBS"
                     /note="Src homology 3 domain of DBL's Big Sister (DBS), a
                     guanine nucleotide exchange factor; cd11857"
                     /db_xref="CDD:212791"
     Site            order(1094,1096,1099,1103,1121..1122,1137,1139..1140)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212791"
     CDS             1..1188
                     /gene="MCF2L"
                     /coded_by="XM_054062022.1:19..3585"
                     /db_xref="GeneID:104056612"
ORIGIN      
        1 msqrrllreg heshfrilpr fiqilhgrrh srnnprqics deimhqdivp lyaadiqdql
       61 kkqfaylsgg rggggcpvit fpeypafsei pekefqnvlt yltsipslqd agigfilvid
      121 rrqdkwtsvk asilriaasf pgnlqlvlvl rptgffhral sdiafkfnkd efkmkvpiim
      181 lgsvselqgy idktqltedl ggtldychnr wlsrrtaieg faqkvkqtaq ilqsfgtela
      241 etelpndvqs tsfllathte kkdkmkedir lalqqgddil ggitkpvten peyklnqdql
      301 dnqttierll aqlhetetaf defwikhqqk leqclrlrnf eqnfrevkaa ldivserlsa
      361 ftdvgnscsh vehilsdlan feekscetia karmlasegd afiqsnhyav dsilpkcsel
      421 hhlcdaltte teqrrnllnk slelhsllek smkwcdegiy llasqpvdkc qsqdgaesal
      481 qeiekfldtg tgnkikelnk iyreyahiln ddlkehvqkv fqkqesmeem fqkrqvslkk
      541 laakqtrpvq pvaprpeafv kspctspglq refvsnsess alqrvnyrrg ksemtelhqs
      601 rggsamdeee nlavlrqhvi nelieteray veellcvleg yaaemdnplm ahlippelqn
      661 kkdilfgnme eiyhfhnrif lreleyyvey pelvgrcfld qmedfqiyek ycqnkprses
      721 lwrqfsdsvf fqecqrkldh klsldsyllk pvqritkyql llkemlkysk ncegaedlqe
      781 altsilgilk avndsmhqia itgydgnlne lgkllmqgsf svwtdhkkgh skvkdlarfk
      841 pmqrhlflhe kavlfckkre engegyekap sysykhslnm aavgitenvk gdakkfeiwy
      901 nareevyiiq aptpevkatw vneirkvlts qlqacreasq hrtlehtqsl plptstctsp
      961 srnhirntkk meerkadlas legygttvap kypekgketp ppsaksqtlp milltgpasp
     1021 tspdkkakrh evvsdptpfg lrgwaktshs ldaseendgw ssaedplnss daeeeggggg
     1081 gemkltpgky tvvtdyekgv aeeftmksgd lvqlireged glwyvknlst gregwipann
     1141 llmlignsks aqslsssesg tasstlstss scsdscnass tsfsdikg
//
LOCUS       XP_053918006            1218 aa            linear   VRT 09-MAR-2023
DEFINITION  guanine nucleotide exchange factor DBS isoform X6 [Cuculus
            canorus].
ACCESSION   XP_053918006
VERSION     XP_053918006.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062031.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1218
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1218
                     /product="guanine nucleotide exchange factor DBS isoform
                     X6"
                     /calculated_mol_wt=137685
     Region          76..205
                     /region_name="SEC14"
                     /note="Domain in homologues of a S. cerevisiae
                     phosphatidylinositol transfer protein (Sec14p);
                     smart00516"
                     /db_xref="CDD:214706"
     Region          340..538
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            441..446
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          616..793
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(622,626,723,745..746,749..750,752..753,756..757,
                     760..761,764,789,793)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          800..931
                     /region_name="PH_Dbs"
                     /note="DBL's big sister protein pleckstrin homology (PH)
                     domain; cd01227"
                     /db_xref="CDD:269934"
     Site            order(870,872)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:269934"
     Region          1119..1173
                     /region_name="SH3_DBS"
                     /note="Src homology 3 domain of DBL's Big Sister (DBS), a
                     guanine nucleotide exchange factor; cd11857"
                     /db_xref="CDD:212791"
     Site            order(1124,1126,1129,1133,1151..1152,1167,1169..1170)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212791"
     CDS             1..1218
                     /gene="MCF2L"
                     /coded_by="XM_054062031.1:1071..4727"
                     /db_xref="GeneID:104056612"
ORIGIN      
        1 msqrrllreg heshfrilpr fiqilhgrrh srnnprqics deimhqdivp lyaadiqdql
       61 kkqfaylsgg rggggcpvit fpeypafsei pekefqnvlt yltsipslqd agigfilvid
      121 rrqdkwtsvk asilriaasf pgnlqlvlvl rptgffhral sdiafkfnkd efkmkvpiim
      181 lgsvselqgy idktqltedl ggtldychnr wlsrrtaieg faqkvkqtaq ilqsfgtela
      241 etelpndvqs tsfllathte kkdkmkedir lalqqgddil ggitkpvten peyklnqdql
      301 dnqttierll aqlhetetaf defwikhqqk leqclrlrnf eqnfrevkaa ldivserlsa
      361 ftdvgnscsh vehilsdlan feekscetia karmlasegd afiqsnhyav dsilpkcsel
      421 hhlcdaltte teqrrnllnk slelhsllek smkwcdegiy llasqpvdkc qsqdgaesal
      481 qeiekfldtg tgnkikelnk iyreyahiln ddlkehvqkv fqkqesmeem fqkrqvslkk
      541 laakqtrpvq pvaprpeafv kspctspglq refvsnsess alqrvnyrrg ksemtelhqs
      601 rggsamdeee nlavlrqhvi nelieteray veellcvleg yaaemdnplm ahlippelqn
      661 kkdilfgnme eiyhfhnrif lreleyyvey pelvgrcfld qmedfqiyek ycqnkprses
      721 lwrqfsdsvf fqecqrkldh klsldsyllk pvqritkyql llkemlkysk ncegaedlqe
      781 altsilgilk avndsmhqia itgydgnlne lgkllmqgsf svwtdhkkgh skvkdlarfk
      841 pmqrhlflhe kavlfckkre engegyekap sysykhslnm aavgitenvk gdakkfeiwy
      901 nareevyiiq aptpevkatw vneirkvlts qlqacreasq hrtlehtqsl plptstctss
      961 psrnhirntk kmeerkadla slegygttva pkypekgkdd tsstsecsvl skksftlqgf
     1021 tnlksqketp ppsaksqtlp milltgpasp tspdkkakrh evvsdptpfg lrgwaktshs
     1081 ldaseendgw ssaedplnss daeeeggggg gemkltpgky tvvtdyekgv aeeftmksgd
     1141 lvqlireged glwyvknlst gregwipann llmlignsks aqslsssesg tasstlstss
     1201 scsdscnass tsfsdikg
//
LOCUS       XP_053918014            1207 aa            linear   VRT 09-MAR-2023
DEFINITION  guanine nucleotide exchange factor DBS isoform X7 [Cuculus
            canorus].
ACCESSION   XP_053918014
VERSION     XP_053918014.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062039.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1207
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1207
                     /product="guanine nucleotide exchange factor DBS isoform
                     X7"
                     /calculated_mol_wt=136359
     Region          95..224
                     /region_name="SEC14"
                     /note="Domain in homologues of a S. cerevisiae
                     phosphatidylinositol transfer protein (Sec14p);
                     smart00516"
                     /db_xref="CDD:214706"
     Region          359..557
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            460..465
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          635..812
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(641,645,742,764..765,768..769,771..772,775..776,
                     779..780,783,808,812)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          819..950
                     /region_name="PH_Dbs"
                     /note="DBL's big sister protein pleckstrin homology (PH)
                     domain; cd01227"
                     /db_xref="CDD:269934"
     Site            order(889,891)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:269934"
     Region          1108..1162
                     /region_name="SH3_DBS"
                     /note="Src homology 3 domain of DBL's Big Sister (DBS), a
                     guanine nucleotide exchange factor; cd11857"
                     /db_xref="CDD:212791"
     Site            order(1113,1115,1118,1122,1140..1141,1156,1158..1159)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212791"
     CDS             1..1207
                     /gene="MCF2L"
                     /coded_by="XM_054062039.1:40..3663"
                     /db_xref="GeneID:104056612"
ORIGIN      
        1 msdywywrli lcketgscnc fatanqsnee keedtnhqvv vsdimqlvqd kqevpestad
       61 eimhqdivpl yaadiqdqlk kqfaylsggr ggggcpvitf peypafseip ekefqnvlty
      121 ltsipslqda gigfilvidr rqdkwtsvka silriaasfp gnlqlvlvlr ptgffhrals
      181 diafkfnkde fkmkvpiiml gsvselqgyi dktqltedlg gtldychnrw lsrrtaiegf
      241 aqkvkqtaqi lqsfgtelae telpndvqst sfllathtek kdkmkedirl alqqgddilg
      301 gitkpvtenp eyklnqdqld nqttierlla qlhetetafd efwikhqqkl eqclrlrnfe
      361 qnfrevkaal divserlsaf tdvgnscshv ehilsdlanf eekscetiak armlasegda
      421 fiqsnhyavd silpkcselh hlcdalttet eqrrnllnks lelhslleks mkwcdegiyl
      481 lasqpvdkcq sqdgaesalq eiekfldtgt gnkikelnki yreyahilnd dlkehvqkvf
      541 qkqesmeemf qkrqvslkkl aakqtrpvqp vaprpeafvk spctspglqr efvsnsessa
      601 lqrvnyrrgk semtelhqsr ggsamdeeen lavlrqhvin elieterayv eellcvlegy
      661 aaemdnplma hlippelqnk kdilfgnmee iyhfhnrifl releyyveyp elvgrcfldq
      721 medfqiyeky cqnkprsesl wrqfsdsvff qecqrkldhk lsldsyllkp vqritkyqll
      781 lkemlkyskn cegaedlqea ltsilgilka vndsmhqiai tgydgnlnel gkllmqgsfs
      841 vwtdhkkghs kvkdlarfkp mqrhlflhek avlfckkree ngegyekaps ysykhslnma
      901 avgitenvkg dakkfeiwyn areevyiiqa ptpevkatwv neirkvltsq lqacreasqh
      961 rtlehtqslp lptstctsps rnhirntkkm eerkadlasl egygttvapk ypekgketpp
     1021 psaksqtlpm illtgpaspt spdkkakrhe vvsdptpfgl rgwaktshsl daseendgws
     1081 saedplnssd aeeegggggg emkltpgkyt vvtdyekgva eeftmksgdl vqliregedg
     1141 lwyvknlstg regwipannl lmlignsksa qslsssesgt asstlstsss csdscnasst
     1201 sfsdikg
//
LOCUS       XP_053918022            1169 aa            linear   VRT 09-MAR-2023
DEFINITION  guanine nucleotide exchange factor DBS isoform X8 [Cuculus
            canorus].
ACCESSION   XP_053918022
VERSION     XP_053918022.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062047.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1169
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1169
                     /product="guanine nucleotide exchange factor DBS isoform
                     X8"
                     /calculated_mol_wt=132476
     Region          76..205
                     /region_name="SEC14"
                     /note="Domain in homologues of a S. cerevisiae
                     phosphatidylinositol transfer protein (Sec14p);
                     smart00516"
                     /db_xref="CDD:214706"
     Region          340..538
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            441..446
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          616..793
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(622,626,723,745..746,749..750,752..753,756..757,
                     760..761,764,789,793)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          800..931
                     /region_name="PH_Dbs"
                     /note="DBL's big sister protein pleckstrin homology (PH)
                     domain; cd01227"
                     /db_xref="CDD:269934"
     Site            order(870,872)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:269934"
     Region          1070..1124
                     /region_name="SH3_DBS"
                     /note="Src homology 3 domain of DBL's Big Sister (DBS), a
                     guanine nucleotide exchange factor; cd11857"
                     /db_xref="CDD:212791"
     Site            order(1075,1077,1080,1084,1102..1103,1118,1120..1121)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212791"
     CDS             1..1169
                     /gene="MCF2L"
                     /coded_by="XM_054062047.1:19..3528"
                     /db_xref="GeneID:104056612"
ORIGIN      
        1 msqrrllreg heshfrilpr fiqilhgrrh srnnprqics deimhqdivp lyaadiqdql
       61 kkqfaylsgg rggggcpvit fpeypafsei pekefqnvlt yltsipslqd agigfilvid
      121 rrqdkwtsvk asilriaasf pgnlqlvlvl rptgffhral sdiafkfnkd efkmkvpiim
      181 lgsvselqgy idktqltedl ggtldychnr wlsrrtaieg faqkvkqtaq ilqsfgtela
      241 etelpndvqs tsfllathte kkdkmkedir lalqqgddil ggitkpvten peyklnqdql
      301 dnqttierll aqlhetetaf defwikhqqk leqclrlrnf eqnfrevkaa ldivserlsa
      361 ftdvgnscsh vehilsdlan feekscetia karmlasegd afiqsnhyav dsilpkcsel
      421 hhlcdaltte teqrrnllnk slelhsllek smkwcdegiy llasqpvdkc qsqdgaesal
      481 qeiekfldtg tgnkikelnk iyreyahiln ddlkehvqkv fqkqesmeem fqkrqvslkk
      541 laakqtrpvq pvaprpeafv kspctspglq refvsnsess alqrvnyrrg ksemtelhqs
      601 rggsamdeee nlavlrqhvi nelieteray veellcvleg yaaemdnplm ahlippelqn
      661 kkdilfgnme eiyhfhnrif lreleyyvey pelvgrcfld qmedfqiyek ycqnkprses
      721 lwrqfsdsvf fqecqrkldh klsldsyllk pvqritkyql llkemlkysk ncegaedlqe
      781 altsilgilk avndsmhqia itgydgnlne lgkllmqgsf svwtdhkkgh skvkdlarfk
      841 pmqrhlflhe kavlfckkre engegyekap sysykhslnm aavgitenvk gdakkfeiwy
      901 nareevyiiq aptpevkatw vneirkvlts qlqacreasq hrtlehtqsl plptstctss
      961 psrnhirntk kmeerkadla slegygttva pkypekgkas ptspdkkakr hevvsdptpf
     1021 glrgwaktsh sldaseendg wssaedplns sdaeeegggg ggemkltpgk ytvvtdyekg
     1081 vaeeftmksg dlvqlirege dglwyvknls tgregwipan nllmlignsk saqslssses
     1141 gtasstlsts sscsdscnas stsfsdikg
//
LOCUS       XP_053918032            1168 aa            linear   VRT 09-MAR-2023
DEFINITION  guanine nucleotide exchange factor DBS isoform X9 [Cuculus
            canorus].
ACCESSION   XP_053918032
VERSION     XP_053918032.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062057.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1168
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1168
                     /product="guanine nucleotide exchange factor DBS isoform
                     X9"
                     /calculated_mol_wt=132388
     Region          76..205
                     /region_name="SEC14"
                     /note="Domain in homologues of a S. cerevisiae
                     phosphatidylinositol transfer protein (Sec14p);
                     smart00516"
                     /db_xref="CDD:214706"
     Region          340..538
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            441..446
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          616..793
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(622,626,723,745..746,749..750,752..753,756..757,
                     760..761,764,789,793)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          800..931
                     /region_name="PH_Dbs"
                     /note="DBL's big sister protein pleckstrin homology (PH)
                     domain; cd01227"
                     /db_xref="CDD:269934"
     Site            order(870,872)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:269934"
     Region          1069..1123
                     /region_name="SH3_DBS"
                     /note="Src homology 3 domain of DBL's Big Sister (DBS), a
                     guanine nucleotide exchange factor; cd11857"
                     /db_xref="CDD:212791"
     Site            order(1074,1076,1079,1083,1101..1102,1117,1119..1120)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212791"
     CDS             1..1168
                     /gene="MCF2L"
                     /coded_by="XM_054062057.1:19..3525"
                     /db_xref="GeneID:104056612"
ORIGIN      
        1 msqrrllreg heshfrilpr fiqilhgrrh srnnprqics deimhqdivp lyaadiqdql
       61 kkqfaylsgg rggggcpvit fpeypafsei pekefqnvlt yltsipslqd agigfilvid
      121 rrqdkwtsvk asilriaasf pgnlqlvlvl rptgffhral sdiafkfnkd efkmkvpiim
      181 lgsvselqgy idktqltedl ggtldychnr wlsrrtaieg faqkvkqtaq ilqsfgtela
      241 etelpndvqs tsfllathte kkdkmkedir lalqqgddil ggitkpvten peyklnqdql
      301 dnqttierll aqlhetetaf defwikhqqk leqclrlrnf eqnfrevkaa ldivserlsa
      361 ftdvgnscsh vehilsdlan feekscetia karmlasegd afiqsnhyav dsilpkcsel
      421 hhlcdaltte teqrrnllnk slelhsllek smkwcdegiy llasqpvdkc qsqdgaesal
      481 qeiekfldtg tgnkikelnk iyreyahiln ddlkehvqkv fqkqesmeem fqkrqvslkk
      541 laakqtrpvq pvaprpeafv kspctspglq refvsnsess alqrvnyrrg ksemtelhqs
      601 rggsamdeee nlavlrqhvi nelieteray veellcvleg yaaemdnplm ahlippelqn
      661 kkdilfgnme eiyhfhnrif lreleyyvey pelvgrcfld qmedfqiyek ycqnkprses
      721 lwrqfsdsvf fqecqrkldh klsldsyllk pvqritkyql llkemlkysk ncegaedlqe
      781 altsilgilk avndsmhqia itgydgnlne lgkllmqgsf svwtdhkkgh skvkdlarfk
      841 pmqrhlflhe kavlfckkre engegyekap sysykhslnm aavgitenvk gdakkfeiwy
      901 nareevyiiq aptpevkatw vneirkvlts qlqacreasq hrtlehtqsl plptstctsp
      961 srnhirntkk meerkadlas legygttvap kypekgkasp tspdkkakrh evvsdptpfg
     1021 lrgwaktshs ldaseendgw ssaedplnss daeeeggggg gemkltpgky tvvtdyekgv
     1081 aeeftmksgd lvqlireged glwyvknlst gregwipann llmlignsks aqslsssesg
     1141 tasstlstss scsdscnass tsfsdikg
//
LOCUS       XP_053918041            1204 aa            linear   VRT 09-MAR-2023
DEFINITION  guanine nucleotide exchange factor DBS isoform X10 [Cuculus
            canorus].
ACCESSION   XP_053918041
VERSION     XP_053918041.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062066.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1204
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1204
                     /product="guanine nucleotide exchange factor DBS isoform
                     X10"
                     /calculated_mol_wt=135837
     Region          62..191
                     /region_name="SEC14"
                     /note="Domain in homologues of a S. cerevisiae
                     phosphatidylinositol transfer protein (Sec14p);
                     smart00516"
                     /db_xref="CDD:214706"
     Region          326..524
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            427..432
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          602..779
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(608,612,709,731..732,735..736,738..739,742..743,
                     746..747,750,775,779)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          786..917
                     /region_name="PH_Dbs"
                     /note="DBL's big sister protein pleckstrin homology (PH)
                     domain; cd01227"
                     /db_xref="CDD:269934"
     Site            order(856,858)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:269934"
     Region          1105..1159
                     /region_name="SH3_DBS"
                     /note="Src homology 3 domain of DBL's Big Sister (DBS), a
                     guanine nucleotide exchange factor; cd11857"
                     /db_xref="CDD:212791"
     Site            order(1110,1112,1115,1119,1137..1138,1153,1155..1156)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212791"
     CDS             1..1204
                     /gene="MCF2L"
                     /coded_by="XM_054062066.1:344..3958"
                     /db_xref="GeneID:104056612"
ORIGIN      
        1 mrcwleteem aleelmqrln avsqcadeim hqdivplyaa diqdqlkkqf aylsggrggg
       61 gcpvitfpey pafseipeke fqnvltylts ipslqdagig filvidrrqd kwtsvkasil
      121 riaasfpgnl qlvlvlrptg ffhralsdia fkfnkdefkm kvpiimlgsv selqgyidkt
      181 qltedlggtl dychnrwlsr rtaiegfaqk vkqtaqilqs fgtelaetel pndvqstsfl
      241 lathtekkdk mkedirlalq qgddilggit kpvtenpeyk lnqdqldnqt tierllaqlh
      301 etetafdefw ikhqqkleqc lrlrnfeqnf revkaaldiv serlsaftdv gnscshvehi
      361 lsdlanfeek scetiakarm lasegdafiq snhyavdsil pkcselhhlc daltteteqr
      421 rnllnkslel hslleksmkw cdegiyllas qpvdkcqsqd gaesalqeie kfldtgtgnk
      481 ikelnkiyre yahilnddlk ehvqkvfqkq esmeemfqkr qvslkklaak qtrpvqpvap
      541 rpeafvkspc tspglqrefv snsessalqr vnyrrgksem telhqsrggs amdeeenlav
      601 lrqhvineli eterayveel lcvlegyaae mdnplmahli ppelqnkkdi lfgnmeeiyh
      661 fhnriflrel eyyveypelv grcfldqmed fqiyekycqn kprseslwrq fsdsvffqec
      721 qrkldhklsl dsyllkpvqr itkyqlllke mlkysknceg aedlqealts ilgilkavnd
      781 smhqiaitgy dgnlnelgkl lmqgsfsvwt dhkkghskvk dlarfkpmqr hlflhekavl
      841 fckkreenge gyekapsysy khslnmaavg itenvkgdak kfeiwynare evyiiqaptp
      901 evkatwvnei rkvltsqlqa creasqhrtl ehtqslplpt stctsspsrn hirntkkmee
      961 rkadlasleg ygttvapkyp ekgkddtsst secsvlskks ftlqgftnlk sqketpppsa
     1021 ksqtlpmill tgpasptspd kkakrhevvs dptpfglrgw aktshsldas eendgwssae
     1081 dplnssdaee eggggggemk ltpgkytvvt dyekgvaeef tmksgdlvql iregedglwy
     1141 vknlstgreg wipannllml ignsksaqsl sssesgtass tlstssscsd scnasstsfs
     1201 dikg
//
LOCUS       XP_053918049            1202 aa            linear   VRT 09-MAR-2023
DEFINITION  guanine nucleotide exchange factor DBS isoform X11 [Cuculus
            canorus].
ACCESSION   XP_053918049
VERSION     XP_053918049.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062074.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1202
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1202
                     /product="guanine nucleotide exchange factor DBS isoform
                     X11"
                     /calculated_mol_wt=135488
     Region          60..189
                     /region_name="SEC14"
                     /note="Domain in homologues of a S. cerevisiae
                     phosphatidylinositol transfer protein (Sec14p);
                     smart00516"
                     /db_xref="CDD:214706"
     Region          324..522
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            425..430
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          600..777
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(606,610,707,729..730,733..734,736..737,740..741,
                     744..745,748,773,777)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          784..915
                     /region_name="PH_Dbs"
                     /note="DBL's big sister protein pleckstrin homology (PH)
                     domain; cd01227"
                     /db_xref="CDD:269934"
     Site            order(854,856)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:269934"
     Region          1103..1157
                     /region_name="SH3_DBS"
                     /note="Src homology 3 domain of DBL's Big Sister (DBS), a
                     guanine nucleotide exchange factor; cd11857"
                     /db_xref="CDD:212791"
     Site            order(1108,1110,1113,1117,1135..1136,1151,1153..1154)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212791"
     CDS             1..1202
                     /gene="MCF2L"
                     /coded_by="XM_054062074.1:113..3721"
                     /db_xref="GeneID:104056612"
ORIGIN      
        1 mtlslislly kgiaelwlll kestdeimhq divplyaadi qdqlkkqfay lsggrggggc
       61 pvitfpeypa fseipekefq nvltyltsip slqdagigfi lvidrrqdkw tsvkasilri
      121 aasfpgnlql vlvlrptgff hralsdiafk fnkdefkmkv piimlgsvse lqgyidktql
      181 tedlggtldy chnrwlsrrt aiegfaqkvk qtaqilqsfg telaetelpn dvqstsflla
      241 thtekkdkmk edirlalqqg ddilggitkp vtenpeykln qdqldnqtti erllaqlhet
      301 etafdefwik hqqkleqclr lrnfeqnfre vkaaldivse rlsaftdvgn scshvehils
      361 dlanfeeksc etiakarmla segdafiqsn hyavdsilpk cselhhlcda ltteteqrrn
      421 llnkslelhs lleksmkwcd egiyllasqp vdkcqsqdga esalqeiekf ldtgtgnkik
      481 elnkiyreya hilnddlkeh vqkvfqkqes meemfqkrqv slkklaakqt rpvqpvaprp
      541 eafvkspcts pglqrefvsn sessalqrvn yrrgksemte lhqsrggsam deeenlavlr
      601 qhvineliet erayveellc vlegyaaemd nplmahlipp elqnkkdilf gnmeeiyhfh
      661 nriflreley yveypelvgr cfldqmedfq iyekycqnkp rseslwrqfs dsvffqecqr
      721 kldhklslds yllkpvqrit kyqlllkeml kyskncegae dlqealtsil gilkavndsm
      781 hqiaitgydg nlnelgkllm qgsfsvwtdh kkghskvkdl arfkpmqrhl flhekavlfc
      841 kkreengegy ekapsysykh slnmaavgit envkgdakkf eiwynareev yiiqaptpev
      901 katwvneirk vltsqlqacr easqhrtleh tqslplptst ctsspsrnhi rntkkmeerk
      961 adlaslegyg ttvapkypek gkddtsstse csvlskksft lqgftnlksq ketpppsaks
     1021 qtlpmilltg pasptspdkk akrhevvsdp tpfglrgwak tshsldasee ndgwssaedp
     1081 lnssdaeeeg gggggemklt pgkytvvtdy ekgvaeeftm ksgdlvqlir egedglwyvk
     1141 nlstgregwi pannllmlig nsksaqslss sesgtasstl stssscsdsc nasstsfsdi
     1201 kg
//
LOCUS       XP_053918060            1144 aa            linear   VRT 09-MAR-2023
DEFINITION  guanine nucleotide exchange factor DBS isoform X12 [Cuculus
            canorus].
ACCESSION   XP_053918060
VERSION     XP_053918060.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062085.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1144
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1144
                     /product="guanine nucleotide exchange factor DBS isoform
                     X12"
                     /calculated_mol_wt=129772
     Region          76..205
                     /region_name="SEC14"
                     /note="Domain in homologues of a S. cerevisiae
                     phosphatidylinositol transfer protein (Sec14p);
                     smart00516"
                     /db_xref="CDD:214706"
     Region          340..538
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            441..446
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          616..793
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(622,626,723,745..746,749..750,752..753,756..757,
                     760..761,764,789,793)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          800..931
                     /region_name="PH_Dbs"
                     /note="DBL's big sister protein pleckstrin homology (PH)
                     domain; cd01227"
                     /db_xref="CDD:269934"
     Site            order(870,872)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:269934"
     Region          1045..1099
                     /region_name="SH3_DBS"
                     /note="Src homology 3 domain of DBL's Big Sister (DBS), a
                     guanine nucleotide exchange factor; cd11857"
                     /db_xref="CDD:212791"
     Site            order(1050,1052,1055,1059,1077..1078,1093,1095..1096)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212791"
     CDS             1..1144
                     /gene="MCF2L"
                     /coded_by="XM_054062085.1:19..3453"
                     /db_xref="GeneID:104056612"
ORIGIN      
        1 msqrrllreg heshfrilpr fiqilhgrrh srnnprqics deimhqdivp lyaadiqdql
       61 kkqfaylsgg rggggcpvit fpeypafsei pekefqnvlt yltsipslqd agigfilvid
      121 rrqdkwtsvk asilriaasf pgnlqlvlvl rptgffhral sdiafkfnkd efkmkvpiim
      181 lgsvselqgy idktqltedl ggtldychnr wlsrrtaieg faqkvkqtaq ilqsfgtela
      241 etelpndvqs tsfllathte kkdkmkedir lalqqgddil ggitkpvten peyklnqdql
      301 dnqttierll aqlhetetaf defwikhqqk leqclrlrnf eqnfrevkaa ldivserlsa
      361 ftdvgnscsh vehilsdlan feekscetia karmlasegd afiqsnhyav dsilpkcsel
      421 hhlcdaltte teqrrnllnk slelhsllek smkwcdegiy llasqpvdkc qsqdgaesal
      481 qeiekfldtg tgnkikelnk iyreyahiln ddlkehvqkv fqkqesmeem fqkrqvslkk
      541 laakqtrpvq pvaprpeafv kspctspglq refvsnsess alqrvnyrrg ksemtelhqs
      601 rggsamdeee nlavlrqhvi nelieteray veellcvleg yaaemdnplm ahlippelqn
      661 kkdilfgnme eiyhfhnrif lreleyyvey pelvgrcfld qmedfqiyek ycqnkprses
      721 lwrqfsdsvf fqecqrkldh klsldsyllk pvqritkyql llkemlkysk ncegaedlqe
      781 altsilgilk avndsmhqia itgydgnlne lgkllmqgsf svwtdhkkgh skvkdlarfk
      841 pmqrhlflhe kavlfckkre engegyekap sysykhslnm aavgitenvk gdakkfeiwy
      901 nareevyiiq aptpevkatw vneirkvlts qlqacreasq hrtlehtqsl plptstctss
      961 psrnhirntk kmeerkadla slegygttva pkypekgkgw aktshsldas eendgwssae
     1021 dplnssdaee eggggggemk ltpgkytvvt dyekgvaeef tmksgdlvql iregedglwy
     1081 vknlstgreg wipannllml ignsksaqsl sssesgtass tlstssscsd scnasstsfs
     1141 dikg
//
LOCUS       XP_053918068            1143 aa            linear   VRT 09-MAR-2023
DEFINITION  guanine nucleotide exchange factor DBS isoform X13 [Cuculus
            canorus].
ACCESSION   XP_053918068
VERSION     XP_053918068.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062093.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1143
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1143
                     /product="guanine nucleotide exchange factor DBS isoform
                     X13"
                     /calculated_mol_wt=129685
     Region          76..205
                     /region_name="SEC14"
                     /note="Domain in homologues of a S. cerevisiae
                     phosphatidylinositol transfer protein (Sec14p);
                     smart00516"
                     /db_xref="CDD:214706"
     Region          340..538
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            441..446
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          616..793
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(622,626,723,745..746,749..750,752..753,756..757,
                     760..761,764,789,793)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          800..931
                     /region_name="PH_Dbs"
                     /note="DBL's big sister protein pleckstrin homology (PH)
                     domain; cd01227"
                     /db_xref="CDD:269934"
     Site            order(870,872)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:269934"
     Region          1044..1098
                     /region_name="SH3_DBS"
                     /note="Src homology 3 domain of DBL's Big Sister (DBS), a
                     guanine nucleotide exchange factor; cd11857"
                     /db_xref="CDD:212791"
     Site            order(1049,1051,1054,1058,1076..1077,1092,1094..1095)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212791"
     CDS             1..1143
                     /gene="MCF2L"
                     /coded_by="XM_054062093.1:19..3450"
                     /db_xref="GeneID:104056612"
ORIGIN      
        1 msqrrllreg heshfrilpr fiqilhgrrh srnnprqics deimhqdivp lyaadiqdql
       61 kkqfaylsgg rggggcpvit fpeypafsei pekefqnvlt yltsipslqd agigfilvid
      121 rrqdkwtsvk asilriaasf pgnlqlvlvl rptgffhral sdiafkfnkd efkmkvpiim
      181 lgsvselqgy idktqltedl ggtldychnr wlsrrtaieg faqkvkqtaq ilqsfgtela
      241 etelpndvqs tsfllathte kkdkmkedir lalqqgddil ggitkpvten peyklnqdql
      301 dnqttierll aqlhetetaf defwikhqqk leqclrlrnf eqnfrevkaa ldivserlsa
      361 ftdvgnscsh vehilsdlan feekscetia karmlasegd afiqsnhyav dsilpkcsel
      421 hhlcdaltte teqrrnllnk slelhsllek smkwcdegiy llasqpvdkc qsqdgaesal
      481 qeiekfldtg tgnkikelnk iyreyahiln ddlkehvqkv fqkqesmeem fqkrqvslkk
      541 laakqtrpvq pvaprpeafv kspctspglq refvsnsess alqrvnyrrg ksemtelhqs
      601 rggsamdeee nlavlrqhvi nelieteray veellcvleg yaaemdnplm ahlippelqn
      661 kkdilfgnme eiyhfhnrif lreleyyvey pelvgrcfld qmedfqiyek ycqnkprses
      721 lwrqfsdsvf fqecqrkldh klsldsyllk pvqritkyql llkemlkysk ncegaedlqe
      781 altsilgilk avndsmhqia itgydgnlne lgkllmqgsf svwtdhkkgh skvkdlarfk
      841 pmqrhlflhe kavlfckkre engegyekap sysykhslnm aavgitenvk gdakkfeiwy
      901 nareevyiiq aptpevkatw vneirkvlts qlqacreasq hrtlehtqsl plptstctsp
      961 srnhirntkk meerkadlas legygttvap kypekgkgwa ktshsldase endgwssaed
     1021 plnssdaeee ggggggemkl tpgkytvvtd yekgvaeeft mksgdlvqli regedglwyv
     1081 knlstgregw ipannllmli gnsksaqsls ssesgtasst lstssscsds cnasstsfsd
     1141 ikg
//
LOCUS       XP_053918076            1175 aa            linear   VRT 09-MAR-2023
DEFINITION  guanine nucleotide exchange factor DBS isoform X14 [Cuculus
            canorus].
ACCESSION   XP_053918076
VERSION     XP_053918076.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062101.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1175
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1175
                     /product="guanine nucleotide exchange factor DBS isoform
                     X14"
                     /calculated_mol_wt=132412
     Region          33..162
                     /region_name="SEC14"
                     /note="Domain in homologues of a S. cerevisiae
                     phosphatidylinositol transfer protein (Sec14p);
                     smart00516"
                     /db_xref="CDD:214706"
     Region          297..495
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            398..403
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          573..750
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(579,583,680,702..703,706..707,709..710,713..714,
                     717..718,721,746,750)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          757..888
                     /region_name="PH_Dbs"
                     /note="DBL's big sister protein pleckstrin homology (PH)
                     domain; cd01227"
                     /db_xref="CDD:269934"
     Site            order(827,829)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:269934"
     Region          1076..1130
                     /region_name="SH3_DBS"
                     /note="Src homology 3 domain of DBL's Big Sister (DBS), a
                     guanine nucleotide exchange factor; cd11857"
                     /db_xref="CDD:212791"
     Site            order(1081,1083,1086,1090,1108..1109,1124,1126..1127)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212791"
     CDS             1..1175
                     /gene="MCF2L"
                     /coded_by="XM_054062101.1:81..3608"
                     /db_xref="GeneID:104056612"
ORIGIN      
        1 mhqdivplya adiqdqlkkq faylsggrgg ggcpvitfpe ypafseipek efqnvltylt
       61 sipslqdagi gfilvidrrq dkwtsvkasi lriaasfpgn lqlvlvlrpt gffhralsdi
      121 afkfnkdefk mkvpiimlgs vselqgyidk tqltedlggt ldychnrwls rrtaiegfaq
      181 kvkqtaqilq sfgtelaete lpndvqstsf llathtekkd kmkedirlal qqgddilggi
      241 tkpvtenpey klnqdqldnq ttierllaql hetetafdef wikhqqkleq clrlrnfeqn
      301 frevkaaldi vserlsaftd vgnscshveh ilsdlanfee kscetiakar mlasegdafi
      361 qsnhyavdsi lpkcselhhl cdaltteteq rrnllnksle lhslleksmk wcdegiylla
      421 sqpvdkcqsq dgaesalqei ekfldtgtgn kikelnkiyr eyahilnddl kehvqkvfqk
      481 qesmeemfqk rqvslkklaa kqtrpvqpva prpeafvksp ctspglqref vsnsessalq
      541 rvnyrrgkse mtelhqsrgg samdeeenla vlrqhvinel ieterayvee llcvlegyaa
      601 emdnplmahl ippelqnkkd ilfgnmeeiy hfhnriflre leyyveypel vgrcfldqme
      661 dfqiyekycq nkprseslwr qfsdsvffqe cqrkldhkls ldsyllkpvq ritkyqlllk
      721 emlkysknce gaedlqealt silgilkavn dsmhqiaitg ydgnlnelgk llmqgsfsvw
      781 tdhkkghskv kdlarfkpmq rhlflhekav lfckkreeng egyekapsys ykhslnmaav
      841 gitenvkgda kkfeiwynar eevyiiqapt pevkatwvne irkvltsqlq acreasqhrt
      901 lehtqslplp tstctsspsr nhirntkkme erkadlasle gygttvapky pekgkddtss
      961 tsecsvlskk sftlqgftnl ksqketppps aksqtlpmil ltgpasptsp dkkakrhevv
     1021 sdptpfglrg waktshslda seendgwssa edplnssdae eeggggggem kltpgkytvv
     1081 tdyekgvaee ftmksgdlvq liregedglw yvknlstgre gwipannllm lignsksaqs
     1141 lsssesgtas stlstssscs dscnasstsf sdikg
//
LOCUS       XP_053918087            1169 aa            linear   VRT 09-MAR-2023
DEFINITION  guanine nucleotide exchange factor DBS isoform X15 [Cuculus
            canorus].
ACCESSION   XP_053918087
VERSION     XP_053918087.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062112.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1169
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1169
                     /product="guanine nucleotide exchange factor DBS isoform
                     X15"
                     /calculated_mol_wt=132017
     Region          <65..156
                     /region_name="SEC14"
                     /note="Domain in homologues of a S. cerevisiae
                     phosphatidylinositol transfer protein (Sec14p);
                     smart00516"
                     /db_xref="CDD:214706"
     Region          291..489
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            392..397
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          567..744
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(573,577,674,696..697,700..701,703..704,707..708,
                     711..712,715,740,744)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          751..882
                     /region_name="PH_Dbs"
                     /note="DBL's big sister protein pleckstrin homology (PH)
                     domain; cd01227"
                     /db_xref="CDD:269934"
     Site            order(821,823)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:269934"
     Region          1070..1124
                     /region_name="SH3_DBS"
                     /note="Src homology 3 domain of DBL's Big Sister (DBS), a
                     guanine nucleotide exchange factor; cd11857"
                     /db_xref="CDD:212791"
     Site            order(1075,1077,1080,1084,1102..1103,1118,1120..1121)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212791"
     CDS             1..1169
                     /gene="MCF2L"
                     /coded_by="XM_054062112.1:104..3613"
                     /db_xref="GeneID:104056612"
ORIGIN      
        1 mfpfwrsasd liflvcdlec lnakgifcfg eyknapgnkf atwrlmrisd vqsnivdclq
       61 dagigfilvi drrqdkwtsv kasilriaas fpgnlqlvlv lrptgffhra lsdiafkfnk
      121 defkmkvpii mlgsvselqg yidktqlted lggtldychn rwlsrrtaie gfaqkvkqta
      181 qilqsfgtel aetelpndvq stsfllatht ekkdkmkedi rlalqqgddi lggitkpvte
      241 npeyklnqdq ldnqttierl laqlheteta fdefwikhqq kleqclrlrn feqnfrevka
      301 aldivserls aftdvgnscs hvehilsdla nfeeksceti akarmlaseg dafiqsnhya
      361 vdsilpkcse lhhlcdaltt eteqrrnlln kslelhslle ksmkwcdegi yllasqpvdk
      421 cqsqdgaesa lqeiekfldt gtgnkikeln kiyreyahil nddlkehvqk vfqkqesmee
      481 mfqkrqvslk klaakqtrpv qpvaprpeaf vkspctspgl qrefvsnses salqrvnyrr
      541 gksemtelhq srggsamdee enlavlrqhv inelietera yveellcvle gyaaemdnpl
      601 mahlippelq nkkdilfgnm eeiyhfhnri flreleyyve ypelvgrcfl dqmedfqiye
      661 kycqnkprse slwrqfsdsv ffqecqrkld hklsldsyll kpvqritkyq lllkemlkys
      721 kncegaedlq ealtsilgil kavndsmhqi aitgydgnln elgkllmqgs fsvwtdhkkg
      781 hskvkdlarf kpmqrhlflh ekavlfckkr eengegyeka psysykhsln maavgitenv
      841 kgdakkfeiw ynareevyii qaptpevkat wvneirkvlt sqlqacreas qhrtlehtqs
      901 lplptstcts spsrnhirnt kkmeerkadl aslegygttv apkypekgkd dtsstsecsv
      961 lskksftlqg ftnlksqket pppsaksqtl pmilltgpas ptspdkkakr hevvsdptpf
     1021 glrgwaktsh sldaseendg wssaedplns sdaeeegggg ggemkltpgk ytvvtdyekg
     1081 vaeeftmksg dlvqlirege dglwyvknls tgregwipan nllmlignsk saqslssses
     1141 gtasstlsts sscsdscnas stsfsdikg
//
LOCUS       XP_009556169            1162 aa            linear   VRT 09-MAR-2023
DEFINITION  guanine nucleotide exchange factor DBS isoform X16 [Cuculus
            canorus].
ACCESSION   XP_009556169
VERSION     XP_009556169.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557874.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556169.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1162
                     /product="guanine nucleotide exchange factor DBS isoform
                     X16"
                     /calculated_mol_wt=131595
     Region          95..224
                     /region_name="SEC14"
                     /note="Domain in homologues of a S. cerevisiae
                     phosphatidylinositol transfer protein (Sec14p);
                     smart00516"
                     /db_xref="CDD:214706"
     Region          359..557
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            460..465
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          635..812
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(641,645,742,764..765,768..769,771..772,775..776,
                     779..780,783,808,812)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          819..950
                     /region_name="PH_Dbs"
                     /note="DBL's big sister protein pleckstrin homology (PH)
                     domain; cd01227"
                     /db_xref="CDD:269934"
     Site            order(889,891)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:269934"
     Region          1063..1117
                     /region_name="SH3_DBS"
                     /note="Src homology 3 domain of DBL's Big Sister (DBS), a
                     guanine nucleotide exchange factor; cd11857"
                     /db_xref="CDD:212791"
     Site            order(1068,1070,1073,1077,1095..1096,1111,1113..1114)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212791"
     CDS             1..1162
                     /gene="MCF2L"
                     /coded_by="XM_009557874.2:22..3510"
                     /db_xref="GeneID:104056612"
ORIGIN      
        1 msdywywrli lcketgscnc fatanqsnee keedtnhqvv vsdimqlvqd kqevpestad
       61 eimhqdivpl yaadiqdqlk kqfaylsggr ggggcpvitf peypafseip ekefqnvlty
      121 ltsipslqda gigfilvidr rqdkwtsvka silriaasfp gnlqlvlvlr ptgffhrals
      181 diafkfnkde fkmkvpiiml gsvselqgyi dktqltedlg gtldychnrw lsrrtaiegf
      241 aqkvkqtaqi lqsfgtelae telpndvqst sfllathtek kdkmkedirl alqqgddilg
      301 gitkpvtenp eyklnqdqld nqttierlla qlhetetafd efwikhqqkl eqclrlrnfe
      361 qnfrevkaal divserlsaf tdvgnscshv ehilsdlanf eekscetiak armlasegda
      421 fiqsnhyavd silpkcselh hlcdalttet eqrrnllnks lelhslleks mkwcdegiyl
      481 lasqpvdkcq sqdgaesalq eiekfldtgt gnkikelnki yreyahilnd dlkehvqkvf
      541 qkqesmeemf qkrqvslkkl aakqtrpvqp vaprpeafvk spctspglqr efvsnsessa
      601 lqrvnyrrgk semtelhqsr ggsamdeeen lavlrqhvin elieterayv eellcvlegy
      661 aaemdnplma hlippelqnk kdilfgnmee iyhfhnrifl releyyveyp elvgrcfldq
      721 medfqiyeky cqnkprsesl wrqfsdsvff qecqrkldhk lsldsyllkp vqritkyqll
      781 lkemlkyskn cegaedlqea ltsilgilka vndsmhqiai tgydgnlnel gkllmqgsfs
      841 vwtdhkkghs kvkdlarfkp mqrhlflhek avlfckkree ngegyekaps ysykhslnma
      901 avgitenvkg dakkfeiwyn areevyiiqa ptpevkatwv neirkvltsq lqacreasqh
      961 rtlehtqslp lptstctsps rnhirntkkm eerkadlasl egygttvapk ypekgkgwak
     1021 tshsldasee ndgwssaedp lnssdaeeeg gggggemklt pgkytvvtdy ekgvaeeftm
     1081 ksgdlvqlir egedglwyvk nlstgregwi pannllmlig nsksaqslss sesgtasstl
     1141 stssscsdsc nasstsfsdi kg
//
LOCUS       XP_009556168            1129 aa            linear   VRT 09-MAR-2023
DEFINITION  guanine nucleotide exchange factor DBS isoform X17 [Cuculus
            canorus].
ACCESSION   XP_009556168
VERSION     XP_009556168.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557873.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556168.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1129
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1129
                     /product="guanine nucleotide exchange factor DBS isoform
                     X17"
                     /calculated_mol_wt=127837
     Region          62..191
                     /region_name="SEC14"
                     /note="Domain in homologues of a S. cerevisiae
                     phosphatidylinositol transfer protein (Sec14p);
                     smart00516"
                     /db_xref="CDD:214706"
     Region          326..524
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            427..432
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          602..779
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(608,612,709,731..732,735..736,738..739,742..743,
                     746..747,750,775,779)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          786..917
                     /region_name="PH_Dbs"
                     /note="DBL's big sister protein pleckstrin homology (PH)
                     domain; cd01227"
                     /db_xref="CDD:269934"
     Site            order(856,858)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:269934"
     Region          1030..1084
                     /region_name="SH3_DBS"
                     /note="Src homology 3 domain of DBL's Big Sister (DBS), a
                     guanine nucleotide exchange factor; cd11857"
                     /db_xref="CDD:212791"
     Site            order(1035,1037,1040,1044,1062..1063,1078,1080..1081)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212791"
     CDS             1..1129
                     /gene="MCF2L"
                     /coded_by="XM_009557873.2:338..3727"
                     /db_xref="GeneID:104056612"
ORIGIN      
        1 mrcwleteem aleelmqrln avsqcadeim hqdivplyaa diqdqlkkqf aylsggrggg
       61 gcpvitfpey pafseipeke fqnvltylts ipslqdagig filvidrrqd kwtsvkasil
      121 riaasfpgnl qlvlvlrptg ffhralsdia fkfnkdefkm kvpiimlgsv selqgyidkt
      181 qltedlggtl dychnrwlsr rtaiegfaqk vkqtaqilqs fgtelaetel pndvqstsfl
      241 lathtekkdk mkedirlalq qgddilggit kpvtenpeyk lnqdqldnqt tierllaqlh
      301 etetafdefw ikhqqkleqc lrlrnfeqnf revkaaldiv serlsaftdv gnscshvehi
      361 lsdlanfeek scetiakarm lasegdafiq snhyavdsil pkcselhhlc daltteteqr
      421 rnllnkslel hslleksmkw cdegiyllas qpvdkcqsqd gaesalqeie kfldtgtgnk
      481 ikelnkiyre yahilnddlk ehvqkvfqkq esmeemfqkr qvslkklaak qtrpvqpvap
      541 rpeafvkspc tspglqrefv snsessalqr vnyrrgksem telhqsrggs amdeeenlav
      601 lrqhvineli eterayveel lcvlegyaae mdnplmahli ppelqnkkdi lfgnmeeiyh
      661 fhnriflrel eyyveypelv grcfldqmed fqiyekycqn kprseslwrq fsdsvffqec
      721 qrkldhklsl dsyllkpvqr itkyqlllke mlkysknceg aedlqealts ilgilkavnd
      781 smhqiaitgy dgnlnelgkl lmqgsfsvwt dhkkghskvk dlarfkpmqr hlflhekavl
      841 fckkreenge gyekapsysy khslnmaavg itenvkgdak kfeiwynare evyiiqaptp
      901 evkatwvnei rkvltsqlqa creasqhrtl ehtqslplpt stctspsrnh irntkkmeer
      961 kadlaslegy gttvapkype kgkgwaktsh sldaseendg wssaedplns sdaeeegggg
     1021 ggemkltpgk ytvvtdyekg vaeeftmksg dlvqlirege dglwyvknls tgregwipan
     1081 nllmlignsk saqslssses gtasstlsts sscsdscnas stsfsdikg
//
LOCUS       XP_053918111            1115 aa            linear   VRT 09-MAR-2023
DEFINITION  guanine nucleotide exchange factor DBS isoform X18 [Cuculus
            canorus].
ACCESSION   XP_053918111
VERSION     XP_053918111.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062136.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1115
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1115
                     /product="guanine nucleotide exchange factor DBS isoform
                     X18"
                     /calculated_mol_wt=125741
     Region          <11..102
                     /region_name="SEC14"
                     /note="Domain in homologues of a S. cerevisiae
                     phosphatidylinositol transfer protein (Sec14p);
                     smart00516"
                     /db_xref="CDD:214706"
     Region          237..435
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            338..343
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          513..690
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(519,523,620,642..643,646..647,649..650,653..654,
                     657..658,661,686,690)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          697..828
                     /region_name="PH_Dbs"
                     /note="DBL's big sister protein pleckstrin homology (PH)
                     domain; cd01227"
                     /db_xref="CDD:269934"
     Site            order(767,769)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:269934"
     Region          1016..1070
                     /region_name="SH3_DBS"
                     /note="Src homology 3 domain of DBL's Big Sister (DBS), a
                     guanine nucleotide exchange factor; cd11857"
                     /db_xref="CDD:212791"
     Site            order(1021,1023,1026,1030,1048..1049,1064,1066..1067)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212791"
     CDS             1..1115
                     /gene="MCF2L"
                     /coded_by="XM_054062136.1:129..3476"
                     /db_xref="GeneID:104056612"
ORIGIN      
        1 meaglqdagi gfilvidrrq dkwtsvkasi lriaasfpgn lqlvlvlrpt gffhralsdi
       61 afkfnkdefk mkvpiimlgs vselqgyidk tqltedlggt ldychnrwls rrtaiegfaq
      121 kvkqtaqilq sfgtelaete lpndvqstsf llathtekkd kmkedirlal qqgddilggi
      181 tkpvtenpey klnqdqldnq ttierllaql hetetafdef wikhqqkleq clrlrnfeqn
      241 frevkaaldi vserlsaftd vgnscshveh ilsdlanfee kscetiakar mlasegdafi
      301 qsnhyavdsi lpkcselhhl cdaltteteq rrnllnksle lhslleksmk wcdegiylla
      361 sqpvdkcqsq dgaesalqei ekfldtgtgn kikelnkiyr eyahilnddl kehvqkvfqk
      421 qesmeemfqk rqvslkklaa kqtrpvqpva prpeafvksp ctspglqref vsnsessalq
      481 rvnyrrgkse mtelhqsrgg samdeeenla vlrqhvinel ieterayvee llcvlegyaa
      541 emdnplmahl ippelqnkkd ilfgnmeeiy hfhnriflre leyyveypel vgrcfldqme
      601 dfqiyekycq nkprseslwr qfsdsvffqe cqrkldhkls ldsyllkpvq ritkyqlllk
      661 emlkysknce gaedlqealt silgilkavn dsmhqiaitg ydgnlnelgk llmqgsfsvw
      721 tdhkkghskv kdlarfkpmq rhlflhekav lfckkreeng egyekapsys ykhslnmaav
      781 gitenvkgda kkfeiwynar eevyiiqapt pevkatwvne irkvltsqlq acreasqhrt
      841 lehtqslplp tstctsspsr nhirntkkme erkadlasle gygttvapky pekgkddtss
      901 tsecsvlskk sftlqgftnl ksqketppps aksqtlpmil ltgpasptsp dkkakrhevv
      961 sdptpfglrg waktshslda seendgwssa edplnssdae eeggggggem kltpgkytvv
     1021 tdyekgvaee ftmksgdlvq liregedglw yvknlstgre gwipannllm lignsksaqs
     1081 lsssesgtas stlstssscs dscnasstsf sdikg
//
LOCUS       XP_053918128            1045 aa            linear   VRT 09-MAR-2023
DEFINITION  guanine nucleotide exchange factor DBS isoform X19 [Cuculus
            canorus].
ACCESSION   XP_053918128
VERSION     XP_053918128.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062153.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1045
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1045
                     /product="guanine nucleotide exchange factor DBS isoform
                     X19"
                     /calculated_mol_wt=117880
     Region          <5..36
                     /region_name="CRAL_TRIO_2"
                     /note="Divergent CRAL/TRIO domain; pfam13716"
                     /db_xref="CDD:463965"
     Region          167..365
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            268..273
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          443..620
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(449,453,550,572..573,576..577,579..580,583..584,
                     587..588,591,616,620)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          627..758
                     /region_name="PH_Dbs"
                     /note="DBL's big sister protein pleckstrin homology (PH)
                     domain; cd01227"
                     /db_xref="CDD:269934"
     Site            order(697,699)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:269934"
     Region          946..1000
                     /region_name="SH3_DBS"
                     /note="Src homology 3 domain of DBL's Big Sister (DBS), a
                     guanine nucleotide exchange factor; cd11857"
                     /db_xref="CDD:212791"
     Site            order(951,953,956,960,978..979,994,996..997)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212791"
     CDS             1..1045
                     /gene="MCF2L"
                     /coded_by="XM_054062153.1:831..3968"
                     /db_xref="GeneID:104056612"
ORIGIN      
        1 mkvpiimlgs vselqgyidk tqltedlggt ldychnrwls rrtaiegfaq kvkqtaqilq
       61 sfgtelaete lpndvqstsf llathtekkd kmkedirlal qqgddilggi tkpvtenpey
      121 klnqdqldnq ttierllaql hetetafdef wikhqqkleq clrlrnfeqn frevkaaldi
      181 vserlsaftd vgnscshveh ilsdlanfee kscetiakar mlasegdafi qsnhyavdsi
      241 lpkcselhhl cdaltteteq rrnllnksle lhslleksmk wcdegiylla sqpvdkcqsq
      301 dgaesalqei ekfldtgtgn kikelnkiyr eyahilnddl kehvqkvfqk qesmeemfqk
      361 rqvslkklaa kqtrpvqpva prpeafvksp ctspglqref vsnsessalq rvnyrrgkse
      421 mtelhqsrgg samdeeenla vlrqhvinel ieterayvee llcvlegyaa emdnplmahl
      481 ippelqnkkd ilfgnmeeiy hfhnriflre leyyveypel vgrcfldqme dfqiyekycq
      541 nkprseslwr qfsdsvffqe cqrkldhkls ldsyllkpvq ritkyqlllk emlkysknce
      601 gaedlqealt silgilkavn dsmhqiaitg ydgnlnelgk llmqgsfsvw tdhkkghskv
      661 kdlarfkpmq rhlflhekav lfckkreeng egyekapsys ykhslnmaav gitenvkgda
      721 kkfeiwynar eevyiiqapt pevkatwvne irkvltsqlq acreasqhrt lehtqslplp
      781 tstctsspsr nhirntkkme erkadlasle gygttvapky pekgkddtss tsecsvlskk
      841 sftlqgftnl ksqketppps aksqtlpmil ltgpasptsp dkkakrhevv sdptpfglrg
      901 waktshslda seendgwssa edplnssdae eeggggggem kltpgkytvv tdyekgvaee
      961 ftmksgdlvq liregedglw yvknlstgre gwipannllm lignsksaqs lsssesgtas
     1021 stlstssscs dscnasstsf sdikg
//
LOCUS       XP_053918136             492 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase TRIM13 isoform X1 [Cuculus canorus].
ACCESSION   XP_053918136
VERSION     XP_053918136.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062161.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..492
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..492
                     /product="E3 ubiquitin-protein ligase TRIM13 isoform X1"
                     /calculated_mol_wt=55609
     Region          89..145
                     /region_name="RING-HC_TRIM13_C-V"
                     /note="RING finger, HC subclass, found in tripartite
                     motif-containing protein 13 (TRIM13) and similar proteins;
                     cd16762"
                     /db_xref="CDD:438418"
     Region          176..217
                     /region_name="Bbox2_TRIM13_C-XI"
                     /note="B-box-type 2 zinc finger found in tripartite
                     motif-containing protein 13 (TRIM13) and similar proteins;
                     cd19767"
                     /db_xref="CDD:380825"
     CDS             1..492
                     /gene="TRIM13"
                     /coded_by="XM_054062161.1:117..1595"
                     /db_xref="GeneID:104066145"
ORIGIN      
        1 mpvpmcsvgr kprrtkvgta fipaptlspt rcgahllsal ttagdssmsr cvmqkqqqrc
       61 acalsegsts gqnqadnvgp gedimellee dltcpiccsl fddprvlpcs hnfcrkcleg
      121 ilegnvrnvl wrpspfkcpt crketpvtgv nslqvnyslk givekynkik vapkmpvckv
      181 hsgqplnifc rtdmqlicgv catrgdhtkh vfcsieeays qekrafetlf qgfetwrcgd
      241 alsrldtlet skrkalqmlt kdsdkvkeff eklqhtleqk rneilsdfet mklavmqayd
      301 peinklntil qeqrmafnia eafkdvsepi iflqqmqefr ekikvlketp lpcstvdisp
      361 tmksfdtsqw ngirlvdvdk lslpqennth kfkipsvfsr rfimtslicl lilaatrmsf
      421 vesvvdnlqc wksqfftigl syladtveia dhavfyweqm tdgasllrek cknytlvvld
      481 nvaqfvckyk ll
//
LOCUS       XP_053918144             426 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase TRIM13 isoform X2 [Cuculus canorus].
ACCESSION   XP_053918144
VERSION     XP_053918144.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062169.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..426
                     /product="E3 ubiquitin-protein ligase TRIM13 isoform X2"
                     /calculated_mol_wt=48931
     Region          23..79
                     /region_name="RING-HC_TRIM13_C-V"
                     /note="RING finger, HC subclass, found in tripartite
                     motif-containing protein 13 (TRIM13) and similar proteins;
                     cd16762"
                     /db_xref="CDD:438418"
     Region          110..151
                     /region_name="Bbox2_TRIM13_C-XI"
                     /note="B-box-type 2 zinc finger found in tripartite
                     motif-containing protein 13 (TRIM13) and similar proteins;
                     cd19767"
                     /db_xref="CDD:380825"
     CDS             1..426
                     /gene="TRIM13"
                     /coded_by="XM_054062169.1:117..1397"
                     /db_xref="GeneID:104066145"
ORIGIN      
        1 mpvpmcsvgr kprrtkdime lleedltcpi ccslfddprv lpcshnfcrk clegilegnv
       61 rnvlwrpspf kcptcrketp vtgvnslqvn yslkgiveky nkikvapkmp vckvhsgqpl
      121 nifcrtdmql icgvcatrgd htkhvfcsie eaysqekraf etlfqgfetw rcgdalsrld
      181 tletskrkal qmltkdsdkv keffeklqht leqkrneils dfetmklavm qaydpeinkl
      241 ntilqeqrma fniaeafkdv sepiiflqqm qefrekikvl ketplpcstv disptmksfd
      301 tsqwngirlv dvdklslpqe nnthkfkips vfsrrfimts licllilaat rmsfvesvvd
      361 nlqcwksqff tiglsyladt veiadhavfy weqmtdgasl lrekcknytl vvldnvaqfv
      421 ckykll
//
LOCUS       XP_053918151             408 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase TRIM13 isoform X3 [Cuculus canorus].
ACCESSION   XP_053918151
VERSION     XP_053918151.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062176.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..408
                     /product="E3 ubiquitin-protein ligase TRIM13 isoform X3"
                     /calculated_mol_wt=46878
     Region          5..61
                     /region_name="RING-HC_TRIM13_C-V"
                     /note="RING finger, HC subclass, found in tripartite
                     motif-containing protein 13 (TRIM13) and similar proteins;
                     cd16762"
                     /db_xref="CDD:438418"
     Region          92..133
                     /region_name="Bbox2_TRIM13_C-XI"
                     /note="B-box-type 2 zinc finger found in tripartite
                     motif-containing protein 13 (TRIM13) and similar proteins;
                     cd19767"
                     /db_xref="CDD:380825"
     CDS             1..408
                     /gene="TRIM13"
                     /coded_by="XM_054062176.1:370..1596"
                     /db_xref="GeneID:104066145"
ORIGIN      
        1 melleedltc piccslfddp rvlpcshnfc rkclegileg nvrnvlwrps pfkcptcrke
       61 tpvtgvnslq vnyslkgive kynkikvapk mpvckvhsgq plnifcrtdm qlicgvcatr
      121 gdhtkhvfcs ieeaysqekr afetlfqgfe twrcgdalsr ldtletskrk alqmltkdsd
      181 kvkeffeklq htleqkrnei lsdfetmkla vmqaydpein klntilqeqr mafniaeafk
      241 dvsepiiflq qmqefrekik vlketplpcs tvdisptmks fdtsqwngir lvdvdklslp
      301 qennthkfki psvfsrrfim tslicllila atrmsfvesv vdnlqcwksq fftiglsyla
      361 dtveiadhav fyweqmtdga sllrekckny tlvvldnvaq fvckykll
//
LOCUS       XP_009567010             275 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium channel regulatory protein [Cuculus canorus].
ACCESSION   XP_009567010
VERSION     XP_009567010.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568715.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567010.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..275
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..275
                     /product="potassium channel regulatory protein"
                     /calculated_mol_wt=31020
     Region          5..101
                     /region_name="BTB_POZ"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; cl38908"
                     /db_xref="CDD:453885"
     CDS             1..275
                     /gene="KCNRG"
                     /coded_by="XM_009568715.2:5..832"
                     /db_xref="GeneID:104066144"
ORIGIN      
        1 mssqeiivln vggvrfvtra sslqqfpesr larmlndddr efklvkgeff vdrdgtlfsy
       61 imdflrtlqv slptdfsdyq rlqreaefyg lypladllsq ehllkprlei levcfslqem
      121 qaffrifgsc satvealaer itvftgqqsg qswnspfpsq kplvphpler pshhdmvlrc
      181 gsdyagdqfv tryvsikpdn rklingtnvl gllldmllkd gfrlistrmv sseekvecyc
      241 fertkrptgl tltvhqtpgs sgasgatrsq aqkgk
//
LOCUS       XP_053918225             495 aa            linear   VRT 09-MAR-2023
DEFINITION  ganglioside-induced differentiation-associated protein 2 [Cuculus
            canorus].
ACCESSION   XP_053918225
VERSION     XP_053918225.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062250.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..495
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..495
                     /product="ganglioside-induced differentiation-associated
                     protein 2"
                     /calculated_mol_wt=56109
     Region          55..222
                     /region_name="Macro_GDAP2-like"
                     /note="macrodomain, GDAP2-like family; cd02905"
                     /db_xref="CDD:394876"
     Site            order(74,86,88,130,167..174)
                     /site_type="other"
                     /note="putative ADP-ribose binding site [chemical
                     binding]"
                     /db_xref="CDD:394876"
     Region          347..478
                     /region_name="CRAL_TRIO_2"
                     /note="Divergent CRAL/TRIO domain; pfam13716"
                     /db_xref="CDD:463965"
     CDS             1..495
                     /gene="GDAP2"
                     /coded_by="XM_054062250.1:214..1701"
                     /db_xref="GeneID:104055662"
ORIGIN      
        1 mdplgapsqf vdvdslpgws dayeakqlds hqnsvekaqv dvrspfpyrk dinekiilwk
       61 gdvallncta ivntsneslt dknpvsesif lhagpdlrde lqklkgcrtg eakltkgfnl
      121 aarfiihtvg pkyksryrta aesslyscyr nvlqlakeqa mcsvgfcvin svkrcypled
      181 athialrtvr rflevhgetl ekvvfavsel eeatyqkllp lyfprsleee iqslpylpad
      241 ignaegepvv perqiritek pgvpddasde egleadlsfi gshafarmeg dvdkqrrlil
      301 qgqlseaalq kqhqrnynrw lcqaraedls diaslkalyq tgvdncgrtv mvvvgrnipv
      361 tlidmekall yfihvmdhia vkeyvlvyfh tltndynqld snflkklydv vdakykrnlk
      421 alyfvhptfr skvsawfftt ftvsglkdki hyveslqqlf aaippeqidl ppfvleydar
      481 engpyysyyp pspdl
//
LOCUS       XP_053918235             390 aa            linear   VRT 09-MAR-2023
DEFINITION  terminal nucleotidyltransferase 5C [Cuculus canorus].
ACCESSION   XP_053918235
VERSION     XP_053918235.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062260.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..390
                     /product="terminal nucleotidyltransferase 5C"
                     /calculated_mol_wt=44603
     Region          16..333
                     /region_name="NTP_transf_7"
                     /note="Nucleotidyltransferase; pfam07984"
                     /db_xref="CDD:462329"
     CDS             1..390
                     /gene="TENT5C"
                     /coded_by="XM_054062260.1:135..1307"
                     /db_xref="GeneID:104055827"
ORIGIN      
        1 masqgsntdc mscsvlnweq vsrlhevlte vvpihgrgnf ptlkitlkdi vqtvrsrlse
       61 agivvhdvrl ngsaaghvlv kdnglgckdl dlifqvslps eaefqlvrdv vlrsllnflp
      121 egvsklkisp vtlkeayiqk lvkvytesdr wslislsnkh gknvelkfve cirrqfefsv
      181 dsfqiildsl lfyydysqap msehfhptvi gesmygdfea afdhlqnkli atknpeeirg
      241 ggllkysnll vrdfrpmdkd eiktlerymc srffidfpdi ldqqrklety lqnhfskder
      301 skydylmilr rvvnestvcl mgherrqtln lisllalkvl aeqniipnat nvtcyyqpap
      361 yvsdvnfsny yianasvpys qsyptwlpcn
//
LOCUS       XP_053918244             390 aa            linear   VRT 09-MAR-2023
DEFINITION  terminal nucleotidyltransferase 5C [Cuculus canorus].
ACCESSION   XP_053918244
VERSION     XP_053918244.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062269.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..390
                     /product="terminal nucleotidyltransferase 5C"
                     /calculated_mol_wt=44603
     Region          16..333
                     /region_name="NTP_transf_7"
                     /note="Nucleotidyltransferase; pfam07984"
                     /db_xref="CDD:462329"
     CDS             1..390
                     /gene="TENT5C"
                     /coded_by="XM_054062269.1:110..1282"
                     /db_xref="GeneID:104055827"
ORIGIN      
        1 masqgsntdc mscsvlnweq vsrlhevlte vvpihgrgnf ptlkitlkdi vqtvrsrlse
       61 agivvhdvrl ngsaaghvlv kdnglgckdl dlifqvslps eaefqlvrdv vlrsllnflp
      121 egvsklkisp vtlkeayiqk lvkvytesdr wslislsnkh gknvelkfve cirrqfefsv
      181 dsfqiildsl lfyydysqap msehfhptvi gesmygdfea afdhlqnkli atknpeeirg
      241 ggllkysnll vrdfrpmdkd eiktlerymc srffidfpdi ldqqrklety lqnhfskder
      301 skydylmilr rvvnestvcl mgherrqtln lisllalkvl aeqniipnat nvtcyyqpap
      361 yvsdvnfsny yianasvpys qsyptwlpcn
//
LOCUS       XP_053918251             390 aa            linear   VRT 09-MAR-2023
DEFINITION  terminal nucleotidyltransferase 5C [Cuculus canorus].
ACCESSION   XP_053918251
VERSION     XP_053918251.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062276.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..390
                     /product="terminal nucleotidyltransferase 5C"
                     /calculated_mol_wt=44603
     Region          16..333
                     /region_name="NTP_transf_7"
                     /note="Nucleotidyltransferase; pfam07984"
                     /db_xref="CDD:462329"
     CDS             1..390
                     /gene="TENT5C"
                     /coded_by="XM_054062276.1:50..1222"
                     /db_xref="GeneID:104055827"
ORIGIN      
        1 masqgsntdc mscsvlnweq vsrlhevlte vvpihgrgnf ptlkitlkdi vqtvrsrlse
       61 agivvhdvrl ngsaaghvlv kdnglgckdl dlifqvslps eaefqlvrdv vlrsllnflp
      121 egvsklkisp vtlkeayiqk lvkvytesdr wslislsnkh gknvelkfve cirrqfefsv
      181 dsfqiildsl lfyydysqap msehfhptvi gesmygdfea afdhlqnkli atknpeeirg
      241 ggllkysnll vrdfrpmdkd eiktlerymc srffidfpdi ldqqrklety lqnhfskder
      301 skydylmilr rvvnestvcl mgherrqtln lisllalkvl aeqniipnat nvtcyyqpap
      361 yvsdvnfsny yianasvpys qsyptwlpcn
//
LOCUS       XP_053918259             390 aa            linear   VRT 09-MAR-2023
DEFINITION  terminal nucleotidyltransferase 5C [Cuculus canorus].
ACCESSION   XP_053918259
VERSION     XP_053918259.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062284.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..390
                     /product="terminal nucleotidyltransferase 5C"
                     /calculated_mol_wt=44603
     Region          16..333
                     /region_name="NTP_transf_7"
                     /note="Nucleotidyltransferase; pfam07984"
                     /db_xref="CDD:462329"
     CDS             1..390
                     /gene="TENT5C"
                     /coded_by="XM_054062284.1:191..1363"
                     /db_xref="GeneID:104055827"
ORIGIN      
        1 masqgsntdc mscsvlnweq vsrlhevlte vvpihgrgnf ptlkitlkdi vqtvrsrlse
       61 agivvhdvrl ngsaaghvlv kdnglgckdl dlifqvslps eaefqlvrdv vlrsllnflp
      121 egvsklkisp vtlkeayiqk lvkvytesdr wslislsnkh gknvelkfve cirrqfefsv
      181 dsfqiildsl lfyydysqap msehfhptvi gesmygdfea afdhlqnkli atknpeeirg
      241 ggllkysnll vrdfrpmdkd eiktlerymc srffidfpdi ldqqrklety lqnhfskder
      301 skydylmilr rvvnestvcl mgherrqtln lisllalkvl aeqniipnat nvtcyyqpap
      361 yvsdvnfsny yianasvpys qsyptwlpcn
//
LOCUS       XP_053918267             390 aa            linear   VRT 09-MAR-2023
DEFINITION  terminal nucleotidyltransferase 5C [Cuculus canorus].
ACCESSION   XP_053918267
VERSION     XP_053918267.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062292.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..390
                     /product="terminal nucleotidyltransferase 5C"
                     /calculated_mol_wt=44603
     Region          16..333
                     /region_name="NTP_transf_7"
                     /note="Nucleotidyltransferase; pfam07984"
                     /db_xref="CDD:462329"
     CDS             1..390
                     /gene="TENT5C"
                     /coded_by="XM_054062292.1:138..1310"
                     /db_xref="GeneID:104055827"
ORIGIN      
        1 masqgsntdc mscsvlnweq vsrlhevlte vvpihgrgnf ptlkitlkdi vqtvrsrlse
       61 agivvhdvrl ngsaaghvlv kdnglgckdl dlifqvslps eaefqlvrdv vlrsllnflp
      121 egvsklkisp vtlkeayiqk lvkvytesdr wslislsnkh gknvelkfve cirrqfefsv
      181 dsfqiildsl lfyydysqap msehfhptvi gesmygdfea afdhlqnkli atknpeeirg
      241 ggllkysnll vrdfrpmdkd eiktlerymc srffidfpdi ldqqrklety lqnhfskder
      301 skydylmilr rvvnestvcl mgherrqtln lisllalkvl aeqniipnat nvtcyyqpap
      361 yvsdvnfsny yianasvpys qsyptwlpcn
//
LOCUS       XP_053918282             607 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium- and chloride-dependent betaine transporter isoform X1
            [Cuculus canorus].
ACCESSION   XP_053918282
VERSION     XP_053918282.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062307.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..607
                     /product="sodium- and chloride-dependent betaine
                     transporter isoform X1"
                     /calculated_mol_wt=68174
     Region          28..568
                     /region_name="SLC6sbd_BGT1"
                     /note="Na(+)- and Cl(-)-dependent betaine/GABA
                     transporter-1, and related proteins; solute-binding
                     domain; cd11511"
                     /db_xref="CDD:212080"
     Site            order(44,47,384,387..388)
                     /site_type="other"
                     /note="Na binding site 2 [ion binding]"
                     /db_xref="CDD:212080"
     Site            order(45..46,48..51,126,286..287,292,294,388,391..392)
                     /site_type="other"
                     /note="putative substrate binding site 1 [chemical
                     binding]"
                     /db_xref="CDD:212080"
     Site            order(46,51,287,319)
                     /site_type="other"
                     /note="Na binding site 1 [ion binding]"
                     /db_xref="CDD:212080"
     Site            order(53..54,125,129,132,353,357)
                     /site_type="other"
                     /note="putative substrate binding site 2 [chemical
                     binding]"
                     /db_xref="CDD:212080"
     CDS             1..607
                     /gene="SLC6A12"
                     /coded_by="XM_054062307.1:87..1910"
                     /db_xref="GeneID:104055912"
ORIGIN      
        1 mtkatakegg sngaitapee ikkedmeerg qwsskmefil svageiiglg nvwrfpylcy
       61 kngggaflip yliflftcgi plffletalg qytsqggvta wrkicpifeg igyasqview
      121 ylniyyiiil swalfylfss fstvlpwasc nnpwnsdlcv dilnssslen rtmpanatss
      181 miefwekrvl gltdgihklg tvrwelalcl llawiicyfc iwkgvkstgk vvyftatfpy
      241 vmliillvrg vtlqgaaegi ifylkpdisr ladpqvwmda gtqilfsyai cqgcltalgs
      301 ynkytnncyr dcimlcflns atsfvagfai fsvlgfmare qgvpiaevae sgpglafiay
      361 ptavtmmpvs qiwsclfflm lvflgldsqf vcvesmvtsl idmfprvfrk kgrrellila
      421 iavicyllgl llvteggmyi fqlfdyyaas gtcllflaif evicvgwvyg anrfydnied
      481 migfrpwpli kicwlvltpg lclavflfsl ikyrplkynn syvyppwgym vgwlmalssm
      541 vciplyaifi llktkgslkq rltqlispae dlpqpkkhms glsnlkhkgw sapvqevlsi
      601 terethf
//
LOCUS       XP_053918291             607 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium- and chloride-dependent betaine transporter isoform X1
            [Cuculus canorus].
ACCESSION   XP_053918291
VERSION     XP_053918291.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062316.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..607
                     /product="sodium- and chloride-dependent betaine
                     transporter isoform X1"
                     /calculated_mol_wt=68174
     Region          28..568
                     /region_name="SLC6sbd_BGT1"
                     /note="Na(+)- and Cl(-)-dependent betaine/GABA
                     transporter-1, and related proteins; solute-binding
                     domain; cd11511"
                     /db_xref="CDD:212080"
     Site            order(44,47,384,387..388)
                     /site_type="other"
                     /note="Na binding site 2 [ion binding]"
                     /db_xref="CDD:212080"
     Site            order(45..46,48..51,126,286..287,292,294,388,391..392)
                     /site_type="other"
                     /note="putative substrate binding site 1 [chemical
                     binding]"
                     /db_xref="CDD:212080"
     Site            order(46,51,287,319)
                     /site_type="other"
                     /note="Na binding site 1 [ion binding]"
                     /db_xref="CDD:212080"
     Site            order(53..54,125,129,132,353,357)
                     /site_type="other"
                     /note="putative substrate binding site 2 [chemical
                     binding]"
                     /db_xref="CDD:212080"
     CDS             1..607
                     /gene="SLC6A12"
                     /coded_by="XM_054062316.1:144..1967"
                     /db_xref="GeneID:104055912"
ORIGIN      
        1 mtkatakegg sngaitapee ikkedmeerg qwsskmefil svageiiglg nvwrfpylcy
       61 kngggaflip yliflftcgi plffletalg qytsqggvta wrkicpifeg igyasqview
      121 ylniyyiiil swalfylfss fstvlpwasc nnpwnsdlcv dilnssslen rtmpanatss
      181 miefwekrvl gltdgihklg tvrwelalcl llawiicyfc iwkgvkstgk vvyftatfpy
      241 vmliillvrg vtlqgaaegi ifylkpdisr ladpqvwmda gtqilfsyai cqgcltalgs
      301 ynkytnncyr dcimlcflns atsfvagfai fsvlgfmare qgvpiaevae sgpglafiay
      361 ptavtmmpvs qiwsclfflm lvflgldsqf vcvesmvtsl idmfprvfrk kgrrellila
      421 iavicyllgl llvteggmyi fqlfdyyaas gtcllflaif evicvgwvyg anrfydnied
      481 migfrpwpli kicwlvltpg lclavflfsl ikyrplkynn syvyppwgym vgwlmalssm
      541 vciplyaifi llktkgslkq rltqlispae dlpqpkkhms glsnlkhkgw sapvqevlsi
      601 terethf
//
LOCUS       XP_053918301             607 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium- and chloride-dependent betaine transporter isoform X1
            [Cuculus canorus].
ACCESSION   XP_053918301
VERSION     XP_053918301.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062326.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..607
                     /product="sodium- and chloride-dependent betaine
                     transporter isoform X1"
                     /calculated_mol_wt=68174
     Region          28..568
                     /region_name="SLC6sbd_BGT1"
                     /note="Na(+)- and Cl(-)-dependent betaine/GABA
                     transporter-1, and related proteins; solute-binding
                     domain; cd11511"
                     /db_xref="CDD:212080"
     Site            order(44,47,384,387..388)
                     /site_type="other"
                     /note="Na binding site 2 [ion binding]"
                     /db_xref="CDD:212080"
     Site            order(45..46,48..51,126,286..287,292,294,388,391..392)
                     /site_type="other"
                     /note="putative substrate binding site 1 [chemical
                     binding]"
                     /db_xref="CDD:212080"
     Site            order(46,51,287,319)
                     /site_type="other"
                     /note="Na binding site 1 [ion binding]"
                     /db_xref="CDD:212080"
     Site            order(53..54,125,129,132,353,357)
                     /site_type="other"
                     /note="putative substrate binding site 2 [chemical
                     binding]"
                     /db_xref="CDD:212080"
     CDS             1..607
                     /gene="SLC6A12"
                     /coded_by="XM_054062326.1:87..1910"
                     /db_xref="GeneID:104055912"
ORIGIN      
        1 mtkatakegg sngaitapee ikkedmeerg qwsskmefil svageiiglg nvwrfpylcy
       61 kngggaflip yliflftcgi plffletalg qytsqggvta wrkicpifeg igyasqview
      121 ylniyyiiil swalfylfss fstvlpwasc nnpwnsdlcv dilnssslen rtmpanatss
      181 miefwekrvl gltdgihklg tvrwelalcl llawiicyfc iwkgvkstgk vvyftatfpy
      241 vmliillvrg vtlqgaaegi ifylkpdisr ladpqvwmda gtqilfsyai cqgcltalgs
      301 ynkytnncyr dcimlcflns atsfvagfai fsvlgfmare qgvpiaevae sgpglafiay
      361 ptavtmmpvs qiwsclfflm lvflgldsqf vcvesmvtsl idmfprvfrk kgrrellila
      421 iavicyllgl llvteggmyi fqlfdyyaas gtcllflaif evicvgwvyg anrfydnied
      481 migfrpwpli kicwlvltpg lclavflfsl ikyrplkynn syvyppwgym vgwlmalssm
      541 vciplyaifi llktkgslkq rltqlispae dlpqpkkhms glsnlkhkgw sapvqevlsi
      601 terethf
//
LOCUS       XP_053918308             607 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium- and chloride-dependent betaine transporter isoform X1
            [Cuculus canorus].
ACCESSION   XP_053918308
VERSION     XP_053918308.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062333.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..607
                     /product="sodium- and chloride-dependent betaine
                     transporter isoform X1"
                     /calculated_mol_wt=68174
     Region          28..568
                     /region_name="SLC6sbd_BGT1"
                     /note="Na(+)- and Cl(-)-dependent betaine/GABA
                     transporter-1, and related proteins; solute-binding
                     domain; cd11511"
                     /db_xref="CDD:212080"
     Site            order(44,47,384,387..388)
                     /site_type="other"
                     /note="Na binding site 2 [ion binding]"
                     /db_xref="CDD:212080"
     Site            order(45..46,48..51,126,286..287,292,294,388,391..392)
                     /site_type="other"
                     /note="putative substrate binding site 1 [chemical
                     binding]"
                     /db_xref="CDD:212080"
     Site            order(46,51,287,319)
                     /site_type="other"
                     /note="Na binding site 1 [ion binding]"
                     /db_xref="CDD:212080"
     Site            order(53..54,125,129,132,353,357)
                     /site_type="other"
                     /note="putative substrate binding site 2 [chemical
                     binding]"
                     /db_xref="CDD:212080"
     CDS             1..607
                     /gene="SLC6A12"
                     /coded_by="XM_054062333.1:23..1846"
                     /db_xref="GeneID:104055912"
ORIGIN      
        1 mtkatakegg sngaitapee ikkedmeerg qwsskmefil svageiiglg nvwrfpylcy
       61 kngggaflip yliflftcgi plffletalg qytsqggvta wrkicpifeg igyasqview
      121 ylniyyiiil swalfylfss fstvlpwasc nnpwnsdlcv dilnssslen rtmpanatss
      181 miefwekrvl gltdgihklg tvrwelalcl llawiicyfc iwkgvkstgk vvyftatfpy
      241 vmliillvrg vtlqgaaegi ifylkpdisr ladpqvwmda gtqilfsyai cqgcltalgs
      301 ynkytnncyr dcimlcflns atsfvagfai fsvlgfmare qgvpiaevae sgpglafiay
      361 ptavtmmpvs qiwsclfflm lvflgldsqf vcvesmvtsl idmfprvfrk kgrrellila
      421 iavicyllgl llvteggmyi fqlfdyyaas gtcllflaif evicvgwvyg anrfydnied
      481 migfrpwpli kicwlvltpg lclavflfsl ikyrplkynn syvyppwgym vgwlmalssm
      541 vciplyaifi llktkgslkq rltqlispae dlpqpkkhms glsnlkhkgw sapvqevlsi
      601 terethf
//
LOCUS       XP_053918313             568 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium- and chloride-dependent betaine transporter isoform X2
            [Cuculus canorus].
ACCESSION   XP_053918313
VERSION     XP_053918313.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062338.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..568
                     /product="sodium- and chloride-dependent betaine
                     transporter isoform X2"
                     /calculated_mol_wt=63760
     Region          28..560
                     /region_name="SLC6sbd_BGT1"
                     /note="Na(+)- and Cl(-)-dependent betaine/GABA
                     transporter-1, and related proteins; solute-binding
                     domain; cd11511"
                     /db_xref="CDD:212080"
     Site            order(44,47,384,387..388)
                     /site_type="other"
                     /note="Na binding site 2 [ion binding]"
                     /db_xref="CDD:212080"
     Site            order(45..46,48..51,126,286..287,292,294,388,391..392)
                     /site_type="other"
                     /note="putative substrate binding site 1 [chemical
                     binding]"
                     /db_xref="CDD:212080"
     Site            order(46,51,287,319)
                     /site_type="other"
                     /note="Na binding site 1 [ion binding]"
                     /db_xref="CDD:212080"
     Site            order(53..54,125,129,132,353,357)
                     /site_type="other"
                     /note="putative substrate binding site 2 [chemical
                     binding]"
                     /db_xref="CDD:212080"
     CDS             1..568
                     /gene="SLC6A12"
                     /coded_by="XM_054062338.1:87..1793"
                     /db_xref="GeneID:104055912"
ORIGIN      
        1 mtkatakegg sngaitapee ikkedmeerg qwsskmefil svageiiglg nvwrfpylcy
       61 kngggaflip yliflftcgi plffletalg qytsqggvta wrkicpifeg igyasqview
      121 ylniyyiiil swalfylfss fstvlpwasc nnpwnsdlcv dilnssslen rtmpanatss
      181 miefwekrvl gltdgihklg tvrwelalcl llawiicyfc iwkgvkstgk vvyftatfpy
      241 vmliillvrg vtlqgaaegi ifylkpdisr ladpqvwmda gtqilfsyai cqgcltalgs
      301 ynkytnncyr dcimlcflns atsfvagfai fsvlgfmare qgvpiaevae sgpglafiay
      361 ptavtmmpvs qiwsclfflm lvflgldsqf vcvesmvtsl idmfprvfrk kgrrellila
      421 iavicyllgl llvteggmyi fqlfdyyaas gtcllflaif evicvgwvyg anrfydnied
      481 migfrpwpli kicwlvltpg lclavflfsl ikyrplkynn syvyppwgym vgwlmalssm
      541 vciplyaifi llktkgslkq shprnvvn
//
LOCUS       XP_009555904             599 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium- and chloride-dependent GABA transporter 1 isoform X1
            [Cuculus canorus].
ACCESSION   XP_009555904
VERSION     XP_009555904.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557609.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555904.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..599
                     /product="sodium- and chloride-dependent GABA transporter
                     1 isoform X1"
                     /calculated_mol_wt=67093
     Region          15..583
                     /region_name="SLC5-6-like_sbd"
                     /note="Solute carrier families 5 and 6-like; solute
                     binding domain; cl00456"
                     /db_xref="CDD:444915"
     Site            order(59,62,392,395..396)
                     /site_type="other"
                     /note="Na binding site [ion binding]"
                     /db_xref="CDD:271356"
     CDS             1..599
                     /gene="LOC104056358"
                     /coded_by="XM_009557609.2:280..2079"
                     /db_xref="GeneID:104056358"
ORIGIN      
        1 mgkmdntsve lsspsevkea aledpepitp galstkkkke ipdrgswkgk fdfllscvgy
       61 aiglgnvwrf pylcgknggg aflipyfltl vfagiplfll etalgqytsv gglgvwklap
      121 mfkgvglaav vlsfwlniyy iviiawalyy lfnsfttdlp wqscgnawnt drcfsnysls
      181 dttnltsavt efwernmhqm sgglgepgtl rwplagtlal awllvyfsiw kgvewtgkvv
      241 yfsatypyfm lfilffrgvt lpgakegilf yltpdfrklt dsevwmdaat qiffsyglgl
      301 gslialgsyn tfhnnvyrds iivccinstt sifagfvifs ivgfmshitk ksiselassg
      361 pglaflaypq vvtqlplspl wsilffsmlm mlgldsqfct vegfitalmd eyphllrark
      421 kifiavvcfi syligfsnit qggiyvfklf dyysasgmcl lflvffetis iswcygvnrf
      481 yrnieemigy kpciwwkicw afftpvvclg vfffsvvemt pltlgkyiyp awgqgigwlm
      541 alssmvlipg ymlycfftst gtlrqrlqqm tqpkpevhaq nnglqlkksl ngrvldaav
//
LOCUS       XP_053918327             479 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium- and chloride-dependent GABA transporter 1 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053918327
VERSION     XP_053918327.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062352.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..479
                     /product="sodium- and chloride-dependent GABA transporter
                     1 isoform X2"
                     /calculated_mol_wt=54225
     Region          1..463
                     /region_name="SLC5-6-like_sbd"
                     /note="Solute carrier families 5 and 6-like; solute
                     binding domain; cl00456"
                     /db_xref="CDD:444915"
     CDS             1..479
                     /gene="LOC104056358"
                     /coded_by="XM_054062352.1:296..1735"
                     /db_xref="GeneID:104056358"
ORIGIN      
        1 mfkgvglaav vlsfwlniyy iviiawalyy lfnsfttdlp wqscgnawnt drcfsnysls
       61 dttnltsavt efwernmhqm sgglgepgtl rwplagtlal awllvyfsiw kgvewtgkvv
      121 yfsatypyfm lfilffrgvt lpgakegilf yltpdfrklt dsevwmdaat qiffsyglgl
      181 gslialgsyn tfhnnvyrds iivccinstt sifagfvifs ivgfmshitk ksiselassg
      241 pglaflaypq vvtqlplspl wsilffsmlm mlgldsqfct vegfitalmd eyphllrark
      301 kifiavvcfi syligfsnit qggiyvfklf dyysasgmcl lflvffetis iswcygvnrf
      361 yrnieemigy kpciwwkicw afftpvvclg vfffsvvemt pltlgkyiyp awgqgigwlm
      421 alssmvlipg ymlycfftst gtlrqrlqqm tqpkpevhaq nnglqlkksl ngrvldaav
//
LOCUS       XP_053918340             680 aa            linear   VRT 09-MAR-2023
DEFINITION  TGF-beta-activated kinase 1 and MAP3K7-binding protein 3 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053918340
VERSION     XP_053918340.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062365.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..680
                     /product="TGF-beta-activated kinase 1 and MAP3K7-binding
                     protein 3 isoform X1"
                     /calculated_mol_wt=75119
     Region          9..50
                     /region_name="CUE_TAB2_TAB3"
                     /note="CUE domain found in the N-terminal of
                     TGF-beta-activated kinase 1 and MAP3K7-binding proteins
                     TAB2, TAB3 and similar proteins; cd14362"
                     /db_xref="CDD:270545"
     Region          <175..456
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          655..677
                     /region_name="ZnF_RBZ"
                     /note="Zinc finger domain; smart00547"
                     /db_xref="CDD:197784"
     Region          655..674
                     /region_name="RanBP2-type Zn finger"
                     /note="RanBP2-type Zn finger [structural motif]"
                     /db_xref="CDD:275376"
     CDS             1..680
                     /gene="TAB3"
                     /coded_by="XM_054062365.1:272..2314"
                     /db_xref="GeneID:104057197"
ORIGIN      
        1 maqgsqqldm qvlhdlrqrf peipegvvsq cmlqhnnnld accralaqes nkylymeyhs
       61 pddtrmnrns llhinlgihp htsyhagdga qlnggrtlvh sssdghidpq rtagkqlicl
      121 vqephsapav vaaspsynpf fvndqnrnaa tpppqpppqp ssiqqgmnts amqgppptym
      181 hiprystnpi tvtvsqnlps gqsvpralqi lpqipsnlyg tpgsiyirqt sqsssgrqtp
      241 qntqwhsspq gpvphytprp lpvyphqqny qpsqyspkqp qipqsafrsp ptsqcpspfg
      301 spqhqvqppq lshqsshvfm ppspstvpph pyqqasqtfq kqgghsvsfl ppfagpslsk
      361 gsmnkieitv eppqrpgtam nrspspisnq psqrnqhsly aattppsssp srgmsgqpkp
      421 pfsvnpvyit ytqptgptga ptqsprvmvs qpnptifkit vgraptenll nlvdqeersa
      481 apepiqpisv ipgsggekgs hkyqrssssg sddyaytqal llhqrarmer lakelkleke
      541 elerlkaevn gmehdlmqrr lrrvscttai ptpeemtrlr slnrqlqinv dctlkevdll
      601 qsrgnfdpka tcnfydniep gpvvppkpyk kehqssskqt praqprdedf egapwncdsc
      661 tflnhpalnr ceqcempryt
//
LOCUS       XP_053918346             680 aa            linear   VRT 09-MAR-2023
DEFINITION  TGF-beta-activated kinase 1 and MAP3K7-binding protein 3 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053918346
VERSION     XP_053918346.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062371.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..680
                     /product="TGF-beta-activated kinase 1 and MAP3K7-binding
                     protein 3 isoform X1"
                     /calculated_mol_wt=75119
     Region          9..50
                     /region_name="CUE_TAB2_TAB3"
                     /note="CUE domain found in the N-terminal of
                     TGF-beta-activated kinase 1 and MAP3K7-binding proteins
                     TAB2, TAB3 and similar proteins; cd14362"
                     /db_xref="CDD:270545"
     Region          <175..456
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          655..677
                     /region_name="ZnF_RBZ"
                     /note="Zinc finger domain; smart00547"
                     /db_xref="CDD:197784"
     Region          655..674
                     /region_name="RanBP2-type Zn finger"
                     /note="RanBP2-type Zn finger [structural motif]"
                     /db_xref="CDD:275376"
     CDS             1..680
                     /gene="TAB3"
                     /coded_by="XM_054062371.1:220..2262"
                     /db_xref="GeneID:104057197"
ORIGIN      
        1 maqgsqqldm qvlhdlrqrf peipegvvsq cmlqhnnnld accralaqes nkylymeyhs
       61 pddtrmnrns llhinlgihp htsyhagdga qlnggrtlvh sssdghidpq rtagkqlicl
      121 vqephsapav vaaspsynpf fvndqnrnaa tpppqpppqp ssiqqgmnts amqgppptym
      181 hiprystnpi tvtvsqnlps gqsvpralqi lpqipsnlyg tpgsiyirqt sqsssgrqtp
      241 qntqwhsspq gpvphytprp lpvyphqqny qpsqyspkqp qipqsafrsp ptsqcpspfg
      301 spqhqvqppq lshqsshvfm ppspstvpph pyqqasqtfq kqgghsvsfl ppfagpslsk
      361 gsmnkieitv eppqrpgtam nrspspisnq psqrnqhsly aattppsssp srgmsgqpkp
      421 pfsvnpvyit ytqptgptga ptqsprvmvs qpnptifkit vgraptenll nlvdqeersa
      481 apepiqpisv ipgsggekgs hkyqrssssg sddyaytqal llhqrarmer lakelkleke
      541 elerlkaevn gmehdlmqrr lrrvscttai ptpeemtrlr slnrqlqinv dctlkevdll
      601 qsrgnfdpka tcnfydniep gpvvppkpyk kehqssskqt praqprdedf egapwncdsc
      661 tflnhpalnr ceqcempryt
//
LOCUS       XP_053918354             620 aa            linear   VRT 09-MAR-2023
DEFINITION  TGF-beta-activated kinase 1 and MAP3K7-binding protein 3 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053918354
VERSION     XP_053918354.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062379.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..620
                     /product="TGF-beta-activated kinase 1 and MAP3K7-binding
                     protein 3 isoform X2"
                     /calculated_mol_wt=68742
     Region          9..50
                     /region_name="CUE_TAB2_TAB3"
                     /note="CUE domain found in the N-terminal of
                     TGF-beta-activated kinase 1 and MAP3K7-binding proteins
                     TAB2, TAB3 and similar proteins; cd14362"
                     /db_xref="CDD:270545"
     Region          <199..>337
                     /region_name="PAT1"
                     /note="Topoisomerase II-associated protein PAT1;
                     pfam09770"
                     /db_xref="CDD:401645"
     Region          <249..451
                     /region_name="PHA03378"
                     /note="EBNA-3B; Provisional"
                     /db_xref="CDD:223065"
     Region          595..617
                     /region_name="ZnF_RBZ"
                     /note="Zinc finger domain; smart00547"
                     /db_xref="CDD:197784"
     Region          595..614
                     /region_name="RanBP2-type Zn finger"
                     /note="RanBP2-type Zn finger [structural motif]"
                     /db_xref="CDD:275376"
     CDS             1..620
                     /gene="TAB3"
                     /coded_by="XM_054062379.1:275..2137"
                     /db_xref="GeneID:104057197"
ORIGIN      
        1 maqgsqqldm qvlhdlrqrf peipegvvsq cmlqhnnnld accralaqes nkylymeyhs
       61 pddtrmnrns llhinlgihp htsyhagdga qlnggrtlvh sssdghidpq rtagkqlicl
      121 vqephsapav vaaspsynpf fvndqnrnaa tpppqpppqp ssiqqgmnts amqgppptym
      181 hiprystnpi tvtvsqnlps gqsvpralqi lpqipsnlyg tpgsiyirqt sqsssgrqtp
      241 qntqwhsspq gpvphytprp lpvyphqqny qpsqyspkqp qipqsafrsp ptsqcpspfg
      301 spqhqvqppq lshqsshvfm ppspstvpph pyqqasqtfq kqgghsvsfl ppfagpslsk
      361 gsmnkieitv eppqrpgtam nrspspisnq psqrnqhsly aattppsssp srvdqeersa
      421 apepiqpisv ipgsggekgs hkyqrssssg sddyaytqal llhqrarmer lakelkleke
      481 elerlkaevn gmehdlmqrr lrrvscttai ptpeemtrlr slnrqlqinv dctlkevdll
      541 qsrgnfdpka tcnfydniep gpvvppkpyk kehqssskqt praqprdedf egapwncdsc
      601 tflnhpalnr ceqcempryt
//
LOCUS       XP_053918361             600 aa            linear   VRT 09-MAR-2023
DEFINITION  TGF-beta-activated kinase 1 and MAP3K7-binding protein 3 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053918361
VERSION     XP_053918361.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062386.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..600
                     /product="TGF-beta-activated kinase 1 and MAP3K7-binding
                     protein 3 isoform X3"
                     /calculated_mol_wt=66585
     Region          9..50
                     /region_name="CUE_TAB2_TAB3"
                     /note="CUE domain found in the N-terminal of
                     TGF-beta-activated kinase 1 and MAP3K7-binding proteins
                     TAB2, TAB3 and similar proteins; cd14362"
                     /db_xref="CDD:270545"
     Region          <199..>337
                     /region_name="PAT1"
                     /note="Topoisomerase II-associated protein PAT1;
                     pfam09770"
                     /db_xref="CDD:401645"
     Region          575..597
                     /region_name="ZnF_RBZ"
                     /note="Zinc finger domain; smart00547"
                     /db_xref="CDD:197784"
     Region          575..594
                     /region_name="RanBP2-type Zn finger"
                     /note="RanBP2-type Zn finger [structural motif]"
                     /db_xref="CDD:275376"
     CDS             1..600
                     /gene="TAB3"
                     /coded_by="XM_054062386.1:274..2076"
                     /db_xref="GeneID:104057197"
ORIGIN      
        1 maqgsqqldm qvlhdlrqrf peipegvvsq cmlqhnnnld accralaqes nkylymeyhs
       61 pddtrmnrns llhinlgihp htsyhagdga qlnggrtlvh sssdghidpq rtagkqlicl
      121 vqephsapav vaaspsynpf fvndqnrnaa tpppqpppqp ssiqqgmnts amqgppptym
      181 hiprystnpi tvtvsqnlps gqsvpralqi lpqipsnlyg tpgsiyirqt sqsssgrqtp
      241 qntqwhsspq gpvphytprp lpvyphqqny qpsqyspkqp qipqsafrsp ptsqcpspfg
      301 spqhqvqppq lshqsshvfm ppspstvpph pyqqasqtfq kqgghsvsfl ppfagpslsk
      361 gsmnkieitv eppqrpgtam nrspspisnq psqrnqhsly aattppsssp srgsggekgs
      421 hkyqrssssg sddyaytqal llhqrarmer lakelkleke elerlkaevn gmehdlmqrr
      481 lrrvscttai ptpeemtrlr slnrqlqinv dctlkevdll qsrgnfdpka tcnfydniep
      541 gpvvppkpyk kehqssskqt praqprdedf egapwncdsc tflnhpalnr ceqcempryt
//
LOCUS       XP_053918371             154 aa            linear   VRT 09-MAR-2023
DEFINITION  acrosin-binding protein-like [Cuculus canorus].
ACCESSION   XP_053918371
VERSION     XP_053918371.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062396.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..154
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..154
                     /product="acrosin-binding protein-like"
                     /calculated_mol_wt=17211
     CDS             1..154
                     /gene="LOC128851704"
                     /coded_by="XM_054062396.1:195..659"
                     /db_xref="GeneID:128851704"
ORIGIN      
        1 milcsvvmke ncltslltks wkeleerlfg fgdsvcdsmg rrhmdlhphs afcslkmeqc
       61 qnrknlkrvh cdssnftnyi spqvsaqlqa aeketsssqp lqvnktenlg gprveqwcsr
      121 iasrgcedpr vslwlkaeyn afqegdapaq vgaq
//
LOCUS       XP_053918381             535 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-1,3-mannosyl-glycoprotein
            4-beta-N-acetylglucosaminyltransferase A [Cuculus canorus].
ACCESSION   XP_053918381
VERSION     XP_053918381.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062406.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..535
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..535
                     /product="alpha-1,3-mannosyl-glycoprotein
                     4-beta-N-acetylglucosaminyltransferase A"
                     /calculated_mol_wt=61434
     Region          103..380
                     /region_name="Glyco_transf_54"
                     /note="N-Acetylglucosaminyltransferase-IV (GnT-IV)
                     conserved region; pfam04666"
                     /db_xref="CDD:461384"
     Region          287..311
                     /region_name="putative TM2 helix"
                     /note="putative TM2 helix [structural motif]"
                     /db_xref="CDD:409189"
     CDS             1..535
                     /gene="MGAT4A"
                     /coded_by="XM_054062406.1:360..1967"
                     /db_xref="GeneID:104056656"
ORIGIN      
        1 mrlrngtvat vlvfittfls lswytawqng kekliayqre fhalkerlri aehrtlqrss
       61 elnaileqfr ravaetngsk ntmnnfsdet lkllkeltsr kslqvpniyy hlphllkneg
      121 slqpsvqvgl grtgvsivmg iptvkrkvks yltetlhsli dklspeekld cvmvvfiget
      181 dldyvnsvva slekefstei nsglveviap paayypdltn lketfgdske rvrwrtkqnl
      241 dycflmmyaq kkgvyyiqle ddivvkqnyf stiknfalql asedwmilef sqlgfigkmf
      301 qspditlive fifmfykekp idwlldhilw vkvcnpekda khcdrqksnl rirfrpslfq
      361 hvglhsslag kiqkltdkdf lkpllhkihv nppaevstsl kvyqghtlek tyvgedffwa
      421 vtpvagdyil fkfdkpvnve rylfhsgnpe hpgdillntt vevlpfqnee lvlsketkdk
      481 rledgyfrig kfengiaegt vdpslnpias frlsviqnsa vwailneihi kkitn
//
LOCUS       XP_053918391             535 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-1,3-mannosyl-glycoprotein
            4-beta-N-acetylglucosaminyltransferase A [Cuculus canorus].
ACCESSION   XP_053918391
VERSION     XP_053918391.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062416.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..535
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..535
                     /product="alpha-1,3-mannosyl-glycoprotein
                     4-beta-N-acetylglucosaminyltransferase A"
                     /calculated_mol_wt=61434
     Region          103..380
                     /region_name="Glyco_transf_54"
                     /note="N-Acetylglucosaminyltransferase-IV (GnT-IV)
                     conserved region; pfam04666"
                     /db_xref="CDD:461384"
     Region          287..311
                     /region_name="putative TM2 helix"
                     /note="putative TM2 helix [structural motif]"
                     /db_xref="CDD:409189"
     CDS             1..535
                     /gene="MGAT4A"
                     /coded_by="XM_054062416.1:424..2031"
                     /db_xref="GeneID:104056656"
ORIGIN      
        1 mrlrngtvat vlvfittfls lswytawqng kekliayqre fhalkerlri aehrtlqrss
       61 elnaileqfr ravaetngsk ntmnnfsdet lkllkeltsr kslqvpniyy hlphllkneg
      121 slqpsvqvgl grtgvsivmg iptvkrkvks yltetlhsli dklspeekld cvmvvfiget
      181 dldyvnsvva slekefstei nsglveviap paayypdltn lketfgdske rvrwrtkqnl
      241 dycflmmyaq kkgvyyiqle ddivvkqnyf stiknfalql asedwmilef sqlgfigkmf
      301 qspditlive fifmfykekp idwlldhilw vkvcnpekda khcdrqksnl rirfrpslfq
      361 hvglhsslag kiqkltdkdf lkpllhkihv nppaevstsl kvyqghtlek tyvgedffwa
      421 vtpvagdyil fkfdkpvnve rylfhsgnpe hpgdillntt vevlpfqnee lvlsketkdk
      481 rledgyfrig kfengiaegt vdpslnpias frlsviqnsa vwailneihi kkitn
//
LOCUS       XP_053918400             303 aa            linear   VRT 09-MAR-2023
DEFINITION  protein unc-50 homolog [Cuculus canorus].
ACCESSION   XP_053918400
VERSION     XP_053918400.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062425.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..303
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..303
                     /product="protein unc-50 homolog"
                     /calculated_mol_wt=34737
     Region          78..299
                     /region_name="UNC-50"
                     /note="UNC-50 family; pfam05216"
                     /db_xref="CDD:461592"
     CDS             1..303
                     /gene="UNC50"
                     /coded_by="XM_054062425.1:18..929"
                     /db_xref="GeneID:104056657"
ORIGIN      
        1 mgsrdgrrcs avagreagra rrgrcrkvag gggggrgvsr gsskmlptts vnsrsqgnga
       61 lsprdaarht agakrykylr rlfhfrqmdf efalwqmlyl ftspqrvyrn fhyrkqtkdq
      121 warddpaflv llsiwlcvst vgfgfvldmg ffetiklllw vvfidcvgvg lliatlmwfi
      181 snkylvkqqn rdydvewgya fdvhlnafyp llvilhfiql ffinyviisd svigyfvgnt
      241 lwliaigyyi yvtflgysal pflkntaill ypfallilly lislacgwnf tkmlcsfyky
      301 rvk
//
LOCUS       XP_053918410              75 aa            linear   VRT 09-MAR-2023
DEFINITION  cytochrome c oxidase assembly factor 5 [Cuculus canorus].
ACCESSION   XP_053918410
VERSION     XP_053918410.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062435.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..75
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..75
                     /product="cytochrome c oxidase assembly factor 5"
                     /calculated_mol_wt=8749
     Region          12..72
                     /region_name="Pet191_N"
                     /note="Cytochrome c oxidase assembly protein PET191;
                     pfam10203"
                     /db_xref="CDD:402002"
     CDS             1..75
                     /gene="LOC128851705"
                     /coded_by="XM_054062435.1:114..341"
                     /db_xref="GeneID:128851705"
ORIGIN      
        1 mpryyeekee dsracggvre dlrqcllesp cvlqenkspk qclreghcrs lqmtffackr
       61 smldtrarfr grkgy
//
LOCUS       XP_053918424             756 aa            linear   VRT 09-MAR-2023
DEFINITION  xylosyl- and glucuronyltransferase LARGE1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053918424
VERSION     XP_053918424.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062449.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..756
                     /product="xylosyl- and glucuronyltransferase LARGE1
                     isoform X1"
                     /calculated_mol_wt=87843
     Region          138..417
                     /region_name="GT8_LARGE_C"
                     /note="LARGE catalytic domain has closest homology to GT8
                     glycosyltransferase involved in lipooligosaccharide
                     synthesis; cd06431"
                     /db_xref="CDD:133053"
     Site            order(143..145,148..149,224,240,242..244,272,296..298,
                     334..335,360..361,380,382..383,386)
                     /site_type="active"
                     /note="putative ligand binding site [active]"
                     /db_xref="CDD:133053"
     Site            order(242,244,380)
                     /site_type="active"
                     /note="metal binding site [active]"
                     /db_xref="CDD:133053"
     Region          473..743
                     /region_name="Glyco_transf_49"
                     /note="Glycosyl-transferase for dystroglycan; pfam13896"
                     /db_xref="CDD:464027"
     CDS             1..756
                     /gene="LARGE1"
                     /coded_by="XM_054062449.1:216..2486"
                     /db_xref="GeneID:104065845"
ORIGIN      
        1 mlgicrgrrk flaasltvlf vpaitwiylf agsfedgkpv slsplesqph sprytassqr
       61 ereslevrmr eveeenrvlr kqlslaqsrs pshhrgnhsk tysmeegtgd seslragiva
      121 gnssecgqqp avekcetihv aivcagynas rdvvtlvksv lfhrrnplhf hliadaiakq
      181 ilatlfqtwm vpavridfyd adelksevsw ipnkhysgiy glmklvltkt lpsnlerviv
      241 ldtditfatd iaelwavfhk fkgqqvlglv enqsdwylgn lwknhrpwpa lgrgyntgvi
      301 lllldklrkm kweqmwrlta erelmsmlst sladqdifna vikqnpflvy qlpcfwnvql
      361 sdhtrseqcy rdvsdlkvih wnspkklrvk nkhveffrnl yltfleydgn llrrelfgcp
      421 seadvnsenl qkqlselded dlcyefrrer ftvhrthlyf lhyeyepasd ntdvtlvaql
      481 smdrlqmlea ickhwegpis lalylsdaea qqflryaqgs evlmsrhnvg yhivykegqf
      541 ypvnllrnva mkhistpymf lsdidflpmy glyeylrksv iqldlanskk alivpafetl
      601 ryrlsfpksk aellsmldmg tlftfryhvw tkghaptnfa kwrtattpyr veweadfepy
      661 vvvrkdcpey drrfvgfgwn kvahimelda qeyeftvlpn aymihmphap sfditkfrsn
      721 kqyriclktl keefqqdmsr hygfaalkyl tagnns
//
LOCUS       XP_053918432             663 aa            linear   VRT 09-MAR-2023
DEFINITION  xylosyl- and glucuronyltransferase LARGE1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053918432
VERSION     XP_053918432.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062457.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..663
                     /product="xylosyl- and glucuronyltransferase LARGE1
                     isoform X2"
                     /calculated_mol_wt=76923
     Region          138..417
                     /region_name="GT8_LARGE_C"
                     /note="LARGE catalytic domain has closest homology to GT8
                     glycosyltransferase involved in lipooligosaccharide
                     synthesis; cd06431"
                     /db_xref="CDD:133053"
     Site            order(143..145,148..149,224,240,242..244,272,296..298,
                     334..335,360..361,380,382..383,386)
                     /site_type="active"
                     /note="putative ligand binding site [active]"
                     /db_xref="CDD:133053"
     Site            order(242,244,380)
                     /site_type="active"
                     /note="metal binding site [active]"
                     /db_xref="CDD:133053"
     Region          <494..650
                     /region_name="Glyco_transf_49"
                     /note="Glycosyl-transferase for dystroglycan; pfam13896"
                     /db_xref="CDD:464027"
     CDS             1..663
                     /gene="LARGE1"
                     /coded_by="XM_054062457.1:216..2207"
                     /db_xref="GeneID:104065845"
ORIGIN      
        1 mlgicrgrrk flaasltvlf vpaitwiylf agsfedgkpv slsplesqph sprytassqr
       61 ereslevrmr eveeenrvlr kqlslaqsrs pshhrgnhsk tysmeegtgd seslragiva
      121 gnssecgqqp avekcetihv aivcagynas rdvvtlvksv lfhrrnplhf hliadaiakq
      181 ilatlfqtwm vpavridfyd adelksevsw ipnkhysgiy glmklvltkt lpsnlerviv
      241 ldtditfatd iaelwavfhk fkgqqvlglv enqsdwylgn lwknhrpwpa lgrgyntgvi
      301 lllldklrkm kweqmwrlta erelmsmlst sladqdifna vikqnpflvy qlpcfwnvql
      361 sdhtrseqcy rdvsdlkvih wnspkklrvk nkhveffrnl yltfleydgn llrrelfgcp
      421 seadvnsenl qkqlselded dlcyefrrer ftvhrthlyf lhyeyepasd ntdvtlvaql
      481 smdrksviql dlanskkali vpafetlryr lsfpkskael lsmldmgtlf tfryhvwtkg
      541 haptnfakwr tattpyrvew eadfepyvvv rkdcpeydrr fvgfgwnkva himeldaqey
      601 eftvlpnaym ihmphapsfd itkfrsnkqy riclktlkee fqqdmsrhyg faalkyltag
      661 nns
//
LOCUS       XP_053918441             637 aa            linear   VRT 09-MAR-2023
DEFINITION  xylosyl- and glucuronyltransferase LARGE1 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053918441
VERSION     XP_053918441.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062466.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..637
                     /product="xylosyl- and glucuronyltransferase LARGE1
                     isoform X3"
                     /calculated_mol_wt=73492
     Region          138..417
                     /region_name="GT8_LARGE_C"
                     /note="LARGE catalytic domain has closest homology to GT8
                     glycosyltransferase involved in lipooligosaccharide
                     synthesis; cd06431"
                     /db_xref="CDD:133053"
     Site            order(143..145,148..149,224,240,242..244,272,296..298,
                     334..335,360..361,380,382..383,386)
                     /site_type="active"
                     /note="putative ligand binding site [active]"
                     /db_xref="CDD:133053"
     Site            order(242,244,380)
                     /site_type="active"
                     /note="metal binding site [active]"
                     /db_xref="CDD:133053"
     Region          473..>625
                     /region_name="Glyco_transf_49"
                     /note="Glycosyl-transferase for dystroglycan; pfam13896"
                     /db_xref="CDD:464027"
     CDS             1..637
                     /gene="LARGE1"
                     /coded_by="XM_054062466.1:216..2129"
                     /db_xref="GeneID:104065845"
ORIGIN      
        1 mlgicrgrrk flaasltvlf vpaitwiylf agsfedgkpv slsplesqph sprytassqr
       61 ereslevrmr eveeenrvlr kqlslaqsrs pshhrgnhsk tysmeegtgd seslragiva
      121 gnssecgqqp avekcetihv aivcagynas rdvvtlvksv lfhrrnplhf hliadaiakq
      181 ilatlfqtwm vpavridfyd adelksevsw ipnkhysgiy glmklvltkt lpsnlerviv
      241 ldtditfatd iaelwavfhk fkgqqvlglv enqsdwylgn lwknhrpwpa lgrgyntgvi
      301 lllldklrkm kweqmwrlta erelmsmlst sladqdifna vikqnpflvy qlpcfwnvql
      361 sdhtrseqcy rdvsdlkvih wnspkklrvk nkhveffrnl yltfleydgn llrrelfgcp
      421 seadvnsenl qkqlselded dlcyefrrer ftvhrthlyf lhyeyepasd ntdvtlvaql
      481 smdrlqmlea ickhwegpis lalylsdaea qqflryaqgs evlmsrhnvg yhivykegqf
      541 ypvnllrnva mkhistpymf lsdidflpmy glyeylrksv iqldlanskk alivpafetl
      601 ryrlsfpksk aellsmldmg tlftfrsmss qccptpt
//
LOCUS       XP_053918451             619 aa            linear   VRT 09-MAR-2023
DEFINITION  probable methyltransferase-like protein 25 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053918451
VERSION     XP_053918451.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062476.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..619
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..619
                     /product="probable methyltransferase-like protein 25
                     isoform X1"
                     /calculated_mol_wt=69001
     Region          147..420
                     /region_name="AdoMet_MTases"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); cl17173"
                     /db_xref="CDD:473071"
     CDS             1..619
                     /gene="METTL25"
                     /coded_by="XM_054062476.1:103..1962"
                     /db_xref="GeneID:104054976"
ORIGIN      
        1 marplpaevp aaaalgalrr aaafvsralp lcrahtvefy trglwerlva arpeavlqal
       61 snagplalgr plaeaagael gdddtfsnvf censeklinv hlfalaakyy slsnldvctp
      121 ledileacrg enrettgvkt defmnnkksh evqmmselvd kivnycgikq vidigsgkgy
      181 lssflsmqyd lkvygidssn sntsgahern rklkkhwkay qrrgrtnlks qrweksndrp
      241 vesemkctai nekplidssl qsqdqvalqp scsfteipts etskqtevds vartqsddsr
      301 lseevlamln vlpadavedf slsqrnygel ceeekaqrkm aslkakases sesnlyiplt
      361 scitaetels diisdledcm mvglhtcgdl aantlrifta kpeikavctv gccyhllseq
      421 fenqedcpeg vwgfpmcqyl kdkgwccgrn armsaclale rvavgqmlpt eslfyravlq
      481 vileeiygvt ksnrhvgktf sksssfidyv rkslkkleld dsklpdscim dyyekykhrm
      541 neleafnmlk vvlapcievl illdrlcylk eqsyiilqdn iawsglvklf dpvksprcya
      601 vialkkqscf lsgsklqig
//
LOCUS       XP_053918460             613 aa            linear   VRT 09-MAR-2023
DEFINITION  probable methyltransferase-like protein 25 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053918460
VERSION     XP_053918460.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062485.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..613
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..613
                     /product="probable methyltransferase-like protein 25
                     isoform X2"
                     /calculated_mol_wt=68284
     Region          147..420
                     /region_name="AdoMet_MTases"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); cl17173"
                     /db_xref="CDD:473071"
     CDS             1..613
                     /gene="METTL25"
                     /coded_by="XM_054062485.1:101..1942"
                     /db_xref="GeneID:104054976"
ORIGIN      
        1 marplpaevp aaaalgalrr aaafvsralp lcrahtvefy trglwerlva arpeavlqal
       61 snagplalgr plaeaagael gdddtfsnvf censeklinv hlfalaakyy slsnldvctp
      121 ledileacrg enrettgvkt defmnnkksh evqmmselvd kivnycgikq vidigsgkgy
      181 lssflsmqyd lkvygidssn sntsgahern rklkkhwkay qrrgrtnlks qrweksndrp
      241 vesemkctai nekplidssl qsqdqvalqp scsfteipts etskqtevds vartqsddsr
      301 lseevlamln vlpadavedf slsqrnygel ceeekaqrkm aslkakases sesnlyiplt
      361 scitaetels diisdledcm mvglhtcgdl aantlrifta kpeikavctv gccyhllseq
      421 fenqedcpeg vwgfpmcqyl kdkgwccgrn armsaclale rvavgqmlpt eslfyravlq
      481 vileeiygvt ksnrhvgktf sksssfidyv rkslkkleld dsklpdscim dyyekykhrm
      541 neleafnmlk vvlapcievl illdrlcylk eqdniawsgl vklfdpvksp rcyavialkk
      601 qscflsgskl qig
//
LOCUS       XP_053918469             532 aa            linear   VRT 09-MAR-2023
DEFINITION  probable methyltransferase-like protein 25 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053918469
VERSION     XP_053918469.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062494.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..532
                     /product="probable methyltransferase-like protein 25
                     isoform X3"
                     /calculated_mol_wt=58874
     Region          147..420
                     /region_name="AdoMet_MTases"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); cl17173"
                     /db_xref="CDD:473071"
     CDS             1..532
                     /gene="METTL25"
                     /coded_by="XM_054062494.1:100..1698"
                     /db_xref="GeneID:104054976"
ORIGIN      
        1 marplpaevp aaaalgalrr aaafvsralp lcrahtvefy trglwerlva arpeavlqal
       61 snagplalgr plaeaagael gdddtfsnvf censeklinv hlfalaakyy slsnldvctp
      121 ledileacrg enrettgvkt defmnnkksh evqmmselvd kivnycgikq vidigsgkgy
      181 lssflsmqyd lkvygidssn sntsgahern rklkkhwkay qrrgrtnlks qrweksndrp
      241 vesemkctai nekplidssl qsqdqvalqp scsfteipts etskqtevds vartqsddsr
      301 lseevlamln vlpadavedf slsqrnygel ceeekaqrkm aslkakases sesnlyiplt
      361 scitaetels diisdledcm mvglhtcgdl aantlrifta kpeikavctv gccyhllseq
      421 fenqedcpeg vwgfpmcqyl kdkgwccgrn armsaclale rvavgqmlpt eslfyravlq
      481 vileeiygvt ksnrhvgktf sksssfidyv rkslkkleld dskcmalelt al
//
LOCUS       XP_053918477             527 aa            linear   VRT 09-MAR-2023
DEFINITION  probable methyltransferase-like protein 25 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053918477
VERSION     XP_053918477.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062502.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..527
                     /product="probable methyltransferase-like protein 25
                     isoform X4"
                     /calculated_mol_wt=58404
     Region          147..420
                     /region_name="AdoMet_MTases"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); cl17173"
                     /db_xref="CDD:473071"
     CDS             1..527
                     /gene="METTL25"
                     /coded_by="XM_054062502.1:100..1683"
                     /db_xref="GeneID:104054976"
ORIGIN      
        1 marplpaevp aaaalgalrr aaafvsralp lcrahtvefy trglwerlva arpeavlqal
       61 snagplalgr plaeaagael gdddtfsnvf censeklinv hlfalaakyy slsnldvctp
      121 ledileacrg enrettgvkt defmnnkksh evqmmselvd kivnycgikq vidigsgkgy
      181 lssflsmqyd lkvygidssn sntsgahern rklkkhwkay qrrgrtnlks qrweksndrp
      241 vesemkctai nekplidssl qsqdqvalqp scsfteipts etskqtevds vartqsddsr
      301 lseevlamln vlpadavedf slsqrnygel ceeekaqrkm aslkakases sesnlyiplt
      361 scitaetels diisdledcm mvglhtcgdl aantlrifta kpeikavctv gccyhllseq
      421 fenqedcpeg vwgfpmcqyl kdkgwccgrn armsaclale rvavgqmlpt eslfyravlq
      481 vileeiygvt ksnrhvgktf sksssfidyv rkslkkleld dskfqtv
//
LOCUS       XP_053918485             525 aa            linear   VRT 09-MAR-2023
DEFINITION  probable methyltransferase-like protein 25 isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053918485
VERSION     XP_053918485.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062510.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..525
                     /product="probable methyltransferase-like protein 25
                     isoform X5"
                     /calculated_mol_wt=58124
     Region          147..420
                     /region_name="AdoMet_MTases"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); cl17173"
                     /db_xref="CDD:473071"
     CDS             1..525
                     /gene="METTL25"
                     /coded_by="XM_054062510.1:100..1677"
                     /db_xref="GeneID:104054976"
ORIGIN      
        1 marplpaevp aaaalgalrr aaafvsralp lcrahtvefy trglwerlva arpeavlqal
       61 snagplalgr plaeaagael gdddtfsnvf censeklinv hlfalaakyy slsnldvctp
      121 ledileacrg enrettgvkt defmnnkksh evqmmselvd kivnycgikq vidigsgkgy
      181 lssflsmqyd lkvygidssn sntsgahern rklkkhwkay qrrgrtnlks qrweksndrp
      241 vesemkctai nekplidssl qsqdqvalqp scsfteipts etskqtevds vartqsddsr
      301 lseevlamln vlpadavedf slsqrnygel ceeekaqrkm aslkakases sesnlyiplt
      361 scitaetels diisdledcm mvglhtcgdl aantlrifta kpeikavctv gccyhllseq
      421 fenqedcpeg vwgfpmcqyl kdkgwccgrn armsaclale rvavgqmlpt eslfyravlq
      481 vileeiygvt ksnrhvgktf sksssfidyv rkslkkleld dskvp
//
LOCUS       XP_053918497             204 aa            linear   VRT 09-MAR-2023
DEFINITION  thyroid transcription factor 1-associated protein 26 [Cuculus
            canorus].
ACCESSION   XP_053918497
VERSION     XP_053918497.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062522.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..204
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..204
                     /product="thyroid transcription factor 1-associated
                     protein 26"
                     /calculated_mol_wt=23978
     Region          <11..186
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          <125..203
                     /region_name="rRNA_processing"
                     /note="rRNA processing; pfam08524"
                     /db_xref="CDD:400708"
     CDS             1..204
                     /gene="CCDC59"
                     /coded_by="XM_054062522.1:55..669"
                     /db_xref="GeneID:128851710"
ORIGIN      
        1 maarrggsgt aeeeneagta rgprrkrlwk pvllrnvigs vqegqgfafr rkqkierqyr
       61 rllkrgrkvp sqrddqftdt ypehlkhlyl aeeemlkkrr raqddsvlse eklnkavepv
      121 msegklkkkt anqkaieeye kikaerarrk eeaekrkqqr eaaqrlykqk kmeaykilsk
      181 ktkkgqpnln lqmeyllqki qqnt
//
LOCUS       XP_053918509             828 aa            linear   VRT 09-MAR-2023
DEFINITION  epidermal growth factor receptor kinase substrate 8 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053918509
VERSION     XP_053918509.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062534.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..828
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..828
                     /product="epidermal growth factor receptor kinase
                     substrate 8 isoform X1"
                     /calculated_mol_wt=92373
     Region          61..191
                     /region_name="PTB_EPS8"
                     /note="Epidermal growth factor receptor kinase substrate
                     (EPS8)-like Phosphotyrosine-binding (PTB) domain; cd01210"
                     /db_xref="CDD:269921"
     Site            order(68,147,167)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:269921"
     Site            order(133..138,154,177,181)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:269921"
     Region          536..589
                     /region_name="SH3_Eps8"
                     /note="Src Homology 3 domain of Epidermal growth factor
                     receptor kinase substrate 8 and similar proteins; cd11764"
                     /db_xref="CDD:212698"
     Site            order(536..541,543,546,549..551,558..563,565..573,
                     578..581,585..589)
                     /site_type="other"
                     /note="swapped dimer interface [polypeptide binding]"
                     /db_xref="CDD:212698"
     Site            order(543,547..549,566..568,570,579..580,582..585)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212698"
     Region          726..790
                     /region_name="SAM_EPS8-like"
                     /note="SAM domain of EPS8-like subfamily; cd09540"
                     /db_xref="CDD:188939"
     CDS             1..828
                     /gene="EPS8"
                     /coded_by="XM_054062534.1:336..2822"
                     /db_xref="GeneID:104067842"
ORIGIN      
        1 mnghisntpp ggygsyfpqm ngygsptftq kereqnskts akalyeqrkn yardsassis
       61 etsqyhvehl ttfvldrkea mitvddglrk lklldakgkv wtqdmilqvd dkavslvdle
      121 sknelenfpl stiqhcqavm nacnynsila lvckeptqnk pdlhlfqcde ikatfihedi
      181 esaisdsksg kqkkrletlr miskadsaip ppprapapvp pgtitqvdvr srvaawsawa
      241 aeqgefekhr qyhdheetae miaaridrdv qilnhilddi eyfvtklqka aeafaelskr
      301 kktkkskkkg pgegvltlra kppppdefid cfqkfkhgfn llaklkfhiq npsaaelvhf
      361 lftplhmvvq ttggpelagt vlspllskdt idflrytvts eegqlwmslg dtwtkaradw
      421 pkdqfippyv prfrngwepp llnfmgapke qelnqlaesv anvaeqqrkq emkrlssepp
      481 svpdyppsdg yafsntvykr gplldqgaav aafkqtvsrh vdrnyeahsk aqtkkyakck
      541 yefmarnnse lsvmkeeive ilddrkqwwk vqnksgstgf vpnnildplr nqegglgwse
      601 paytrtiqkq rtdyvvkqpd pvpatpsppp tpapvpvavp lppsapapip vpvpkapati
      661 srqsstssds ggsvardtqr qkqipvdrrk sqmeevqdel vhrltigrsa aqrkfqvprp
      721 nvpvvnityd sspedvrawl qskgfnpvtv nslgvltgaq lfslnkeelr tvcpegsrvy
      781 sqitvqksal eansgsselq eimrrrqeki saaatdsgve sfdegssh
//
LOCUS       XP_053918518             828 aa            linear   VRT 09-MAR-2023
DEFINITION  epidermal growth factor receptor kinase substrate 8 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053918518
VERSION     XP_053918518.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062543.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..828
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..828
                     /product="epidermal growth factor receptor kinase
                     substrate 8 isoform X1"
                     /calculated_mol_wt=92373
     Region          61..191
                     /region_name="PTB_EPS8"
                     /note="Epidermal growth factor receptor kinase substrate
                     (EPS8)-like Phosphotyrosine-binding (PTB) domain; cd01210"
                     /db_xref="CDD:269921"
     Site            order(68,147,167)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:269921"
     Site            order(133..138,154,177,181)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:269921"
     Region          536..589
                     /region_name="SH3_Eps8"
                     /note="Src Homology 3 domain of Epidermal growth factor
                     receptor kinase substrate 8 and similar proteins; cd11764"
                     /db_xref="CDD:212698"
     Site            order(536..541,543,546,549..551,558..563,565..573,
                     578..581,585..589)
                     /site_type="other"
                     /note="swapped dimer interface [polypeptide binding]"
                     /db_xref="CDD:212698"
     Site            order(543,547..549,566..568,570,579..580,582..585)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212698"
     Region          726..790
                     /region_name="SAM_EPS8-like"
                     /note="SAM domain of EPS8-like subfamily; cd09540"
                     /db_xref="CDD:188939"
     CDS             1..828
                     /gene="EPS8"
                     /coded_by="XM_054062543.1:439..2925"
                     /db_xref="GeneID:104067842"
ORIGIN      
        1 mnghisntpp ggygsyfpqm ngygsptftq kereqnskts akalyeqrkn yardsassis
       61 etsqyhvehl ttfvldrkea mitvddglrk lklldakgkv wtqdmilqvd dkavslvdle
      121 sknelenfpl stiqhcqavm nacnynsila lvckeptqnk pdlhlfqcde ikatfihedi
      181 esaisdsksg kqkkrletlr miskadsaip ppprapapvp pgtitqvdvr srvaawsawa
      241 aeqgefekhr qyhdheetae miaaridrdv qilnhilddi eyfvtklqka aeafaelskr
      301 kktkkskkkg pgegvltlra kppppdefid cfqkfkhgfn llaklkfhiq npsaaelvhf
      361 lftplhmvvq ttggpelagt vlspllskdt idflrytvts eegqlwmslg dtwtkaradw
      421 pkdqfippyv prfrngwepp llnfmgapke qelnqlaesv anvaeqqrkq emkrlssepp
      481 svpdyppsdg yafsntvykr gplldqgaav aafkqtvsrh vdrnyeahsk aqtkkyakck
      541 yefmarnnse lsvmkeeive ilddrkqwwk vqnksgstgf vpnnildplr nqegglgwse
      601 paytrtiqkq rtdyvvkqpd pvpatpsppp tpapvpvavp lppsapapip vpvpkapati
      661 srqsstssds ggsvardtqr qkqipvdrrk sqmeevqdel vhrltigrsa aqrkfqvprp
      721 nvpvvnityd sspedvrawl qskgfnpvtv nslgvltgaq lfslnkeelr tvcpegsrvy
      781 sqitvqksal eansgsselq eimrrrqeki saaatdsgve sfdegssh
//
LOCUS       XP_053918526             828 aa            linear   VRT 09-MAR-2023
DEFINITION  epidermal growth factor receptor kinase substrate 8 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053918526
VERSION     XP_053918526.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062551.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..828
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..828
                     /product="epidermal growth factor receptor kinase
                     substrate 8 isoform X1"
                     /calculated_mol_wt=92373
     Region          61..191
                     /region_name="PTB_EPS8"
                     /note="Epidermal growth factor receptor kinase substrate
                     (EPS8)-like Phosphotyrosine-binding (PTB) domain; cd01210"
                     /db_xref="CDD:269921"
     Site            order(68,147,167)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:269921"
     Site            order(133..138,154,177,181)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:269921"
     Region          536..589
                     /region_name="SH3_Eps8"
                     /note="Src Homology 3 domain of Epidermal growth factor
                     receptor kinase substrate 8 and similar proteins; cd11764"
                     /db_xref="CDD:212698"
     Site            order(536..541,543,546,549..551,558..563,565..573,
                     578..581,585..589)
                     /site_type="other"
                     /note="swapped dimer interface [polypeptide binding]"
                     /db_xref="CDD:212698"
     Site            order(543,547..549,566..568,570,579..580,582..585)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212698"
     Region          726..790
                     /region_name="SAM_EPS8-like"
                     /note="SAM domain of EPS8-like subfamily; cd09540"
                     /db_xref="CDD:188939"
     CDS             1..828
                     /gene="EPS8"
                     /coded_by="XM_054062551.1:446..2932"
                     /db_xref="GeneID:104067842"
ORIGIN      
        1 mnghisntpp ggygsyfpqm ngygsptftq kereqnskts akalyeqrkn yardsassis
       61 etsqyhvehl ttfvldrkea mitvddglrk lklldakgkv wtqdmilqvd dkavslvdle
      121 sknelenfpl stiqhcqavm nacnynsila lvckeptqnk pdlhlfqcde ikatfihedi
      181 esaisdsksg kqkkrletlr miskadsaip ppprapapvp pgtitqvdvr srvaawsawa
      241 aeqgefekhr qyhdheetae miaaridrdv qilnhilddi eyfvtklqka aeafaelskr
      301 kktkkskkkg pgegvltlra kppppdefid cfqkfkhgfn llaklkfhiq npsaaelvhf
      361 lftplhmvvq ttggpelagt vlspllskdt idflrytvts eegqlwmslg dtwtkaradw
      421 pkdqfippyv prfrngwepp llnfmgapke qelnqlaesv anvaeqqrkq emkrlssepp
      481 svpdyppsdg yafsntvykr gplldqgaav aafkqtvsrh vdrnyeahsk aqtkkyakck
      541 yefmarnnse lsvmkeeive ilddrkqwwk vqnksgstgf vpnnildplr nqegglgwse
      601 paytrtiqkq rtdyvvkqpd pvpatpsppp tpapvpvavp lppsapapip vpvpkapati
      661 srqsstssds ggsvardtqr qkqipvdrrk sqmeevqdel vhrltigrsa aqrkfqvprp
      721 nvpvvnityd sspedvrawl qskgfnpvtv nslgvltgaq lfslnkeelr tvcpegsrvy
      781 sqitvqksal eansgsselq eimrrrqeki saaatdsgve sfdegssh
//
LOCUS       XP_053918530             828 aa            linear   VRT 09-MAR-2023
DEFINITION  epidermal growth factor receptor kinase substrate 8 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053918530
VERSION     XP_053918530.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062555.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..828
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..828
                     /product="epidermal growth factor receptor kinase
                     substrate 8 isoform X1"
                     /calculated_mol_wt=92373
     Region          61..191
                     /region_name="PTB_EPS8"
                     /note="Epidermal growth factor receptor kinase substrate
                     (EPS8)-like Phosphotyrosine-binding (PTB) domain; cd01210"
                     /db_xref="CDD:269921"
     Site            order(68,147,167)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:269921"
     Site            order(133..138,154,177,181)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:269921"
     Region          536..589
                     /region_name="SH3_Eps8"
                     /note="Src Homology 3 domain of Epidermal growth factor
                     receptor kinase substrate 8 and similar proteins; cd11764"
                     /db_xref="CDD:212698"
     Site            order(536..541,543,546,549..551,558..563,565..573,
                     578..581,585..589)
                     /site_type="other"
                     /note="swapped dimer interface [polypeptide binding]"
                     /db_xref="CDD:212698"
     Site            order(543,547..549,566..568,570,579..580,582..585)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212698"
     Region          726..790
                     /region_name="SAM_EPS8-like"
                     /note="SAM domain of EPS8-like subfamily; cd09540"
                     /db_xref="CDD:188939"
     CDS             1..828
                     /gene="EPS8"
                     /coded_by="XM_054062555.1:158..2644"
                     /db_xref="GeneID:104067842"
ORIGIN      
        1 mnghisntpp ggygsyfpqm ngygsptftq kereqnskts akalyeqrkn yardsassis
       61 etsqyhvehl ttfvldrkea mitvddglrk lklldakgkv wtqdmilqvd dkavslvdle
      121 sknelenfpl stiqhcqavm nacnynsila lvckeptqnk pdlhlfqcde ikatfihedi
      181 esaisdsksg kqkkrletlr miskadsaip ppprapapvp pgtitqvdvr srvaawsawa
      241 aeqgefekhr qyhdheetae miaaridrdv qilnhilddi eyfvtklqka aeafaelskr
      301 kktkkskkkg pgegvltlra kppppdefid cfqkfkhgfn llaklkfhiq npsaaelvhf
      361 lftplhmvvq ttggpelagt vlspllskdt idflrytvts eegqlwmslg dtwtkaradw
      421 pkdqfippyv prfrngwepp llnfmgapke qelnqlaesv anvaeqqrkq emkrlssepp
      481 svpdyppsdg yafsntvykr gplldqgaav aafkqtvsrh vdrnyeahsk aqtkkyakck
      541 yefmarnnse lsvmkeeive ilddrkqwwk vqnksgstgf vpnnildplr nqegglgwse
      601 paytrtiqkq rtdyvvkqpd pvpatpsppp tpapvpvavp lppsapapip vpvpkapati
      661 srqsstssds ggsvardtqr qkqipvdrrk sqmeevqdel vhrltigrsa aqrkfqvprp
      721 nvpvvnityd sspedvrawl qskgfnpvtv nslgvltgaq lfslnkeelr tvcpegsrvy
      781 sqitvqksal eansgsselq eimrrrqeki saaatdsgve sfdegssh
//
LOCUS       XP_053918540             828 aa            linear   VRT 09-MAR-2023
DEFINITION  epidermal growth factor receptor kinase substrate 8 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053918540
VERSION     XP_053918540.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062565.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..828
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..828
                     /product="epidermal growth factor receptor kinase
                     substrate 8 isoform X1"
                     /calculated_mol_wt=92373
     Region          61..191
                     /region_name="PTB_EPS8"
                     /note="Epidermal growth factor receptor kinase substrate
                     (EPS8)-like Phosphotyrosine-binding (PTB) domain; cd01210"
                     /db_xref="CDD:269921"
     Site            order(68,147,167)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:269921"
     Site            order(133..138,154,177,181)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:269921"
     Region          536..589
                     /region_name="SH3_Eps8"
                     /note="Src Homology 3 domain of Epidermal growth factor
                     receptor kinase substrate 8 and similar proteins; cd11764"
                     /db_xref="CDD:212698"
     Site            order(536..541,543,546,549..551,558..563,565..573,
                     578..581,585..589)
                     /site_type="other"
                     /note="swapped dimer interface [polypeptide binding]"
                     /db_xref="CDD:212698"
     Site            order(543,547..549,566..568,570,579..580,582..585)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212698"
     Region          726..790
                     /region_name="SAM_EPS8-like"
                     /note="SAM domain of EPS8-like subfamily; cd09540"
                     /db_xref="CDD:188939"
     CDS             1..828
                     /gene="EPS8"
                     /coded_by="XM_054062565.1:151..2637"
                     /db_xref="GeneID:104067842"
ORIGIN      
        1 mnghisntpp ggygsyfpqm ngygsptftq kereqnskts akalyeqrkn yardsassis
       61 etsqyhvehl ttfvldrkea mitvddglrk lklldakgkv wtqdmilqvd dkavslvdle
      121 sknelenfpl stiqhcqavm nacnynsila lvckeptqnk pdlhlfqcde ikatfihedi
      181 esaisdsksg kqkkrletlr miskadsaip ppprapapvp pgtitqvdvr srvaawsawa
      241 aeqgefekhr qyhdheetae miaaridrdv qilnhilddi eyfvtklqka aeafaelskr
      301 kktkkskkkg pgegvltlra kppppdefid cfqkfkhgfn llaklkfhiq npsaaelvhf
      361 lftplhmvvq ttggpelagt vlspllskdt idflrytvts eegqlwmslg dtwtkaradw
      421 pkdqfippyv prfrngwepp llnfmgapke qelnqlaesv anvaeqqrkq emkrlssepp
      481 svpdyppsdg yafsntvykr gplldqgaav aafkqtvsrh vdrnyeahsk aqtkkyakck
      541 yefmarnnse lsvmkeeive ilddrkqwwk vqnksgstgf vpnnildplr nqegglgwse
      601 paytrtiqkq rtdyvvkqpd pvpatpsppp tpapvpvavp lppsapapip vpvpkapati
      661 srqsstssds ggsvardtqr qkqipvdrrk sqmeevqdel vhrltigrsa aqrkfqvprp
      721 nvpvvnityd sspedvrawl qskgfnpvtv nslgvltgaq lfslnkeelr tvcpegsrvy
      781 sqitvqksal eansgsselq eimrrrqeki saaatdsgve sfdegssh
//
LOCUS       XP_053918550             827 aa            linear   VRT 09-MAR-2023
DEFINITION  epidermal growth factor receptor kinase substrate 8 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053918550
VERSION     XP_053918550.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062575.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..827
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..827
                     /product="epidermal growth factor receptor kinase
                     substrate 8 isoform X2"
                     /calculated_mol_wt=92245
     Region          61..191
                     /region_name="PTB_EPS8"
                     /note="Epidermal growth factor receptor kinase substrate
                     (EPS8)-like Phosphotyrosine-binding (PTB) domain; cd01210"
                     /db_xref="CDD:269921"
     Site            order(68,147,167)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:269921"
     Site            order(133..138,154,177,181)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:269921"
     Region          536..589
                     /region_name="SH3_Eps8"
                     /note="Src Homology 3 domain of Epidermal growth factor
                     receptor kinase substrate 8 and similar proteins; cd11764"
                     /db_xref="CDD:212698"
     Site            order(536..541,543,546,549..551,558..563,565..573,
                     578..581,585..589)
                     /site_type="other"
                     /note="swapped dimer interface [polypeptide binding]"
                     /db_xref="CDD:212698"
     Site            order(543,547..549,566..568,570,579..580,582..585)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212698"
     Region          725..789
                     /region_name="SAM_EPS8-like"
                     /note="SAM domain of EPS8-like subfamily; cd09540"
                     /db_xref="CDD:188939"
     CDS             1..827
                     /gene="EPS8"
                     /coded_by="XM_054062575.1:336..2819"
                     /db_xref="GeneID:104067842"
ORIGIN      
        1 mnghisntpp ggygsyfpqm ngygsptftq kereqnskts akalyeqrkn yardsassis
       61 etsqyhvehl ttfvldrkea mitvddglrk lklldakgkv wtqdmilqvd dkavslvdle
      121 sknelenfpl stiqhcqavm nacnynsila lvckeptqnk pdlhlfqcde ikatfihedi
      181 esaisdsksg kqkkrletlr miskadsaip ppprapapvp pgtitqvdvr srvaawsawa
      241 aeqgefekhr qyhdheetae miaaridrdv qilnhilddi eyfvtklqka aeafaelskr
      301 kktkkskkkg pgegvltlra kppppdefid cfqkfkhgfn llaklkfhiq npsaaelvhf
      361 lftplhmvvq ttggpelagt vlspllskdt idflrytvts eegqlwmslg dtwtkaradw
      421 pkdqfippyv prfrngwepp llnfmgapke qelnqlaesv anvaeqqrkq emkrlssepp
      481 svpdyppsdg yafsntvykr gplldqgaav aafkqtvsrh vdrnyeahsk aqtkkyakck
      541 yefmarnnse lsvmkeeive ilddrkqwwk vqnksgstgf vpnnildplr nqegglgwse
      601 paytrtiqqr tdyvvkqpdp vpatpspppt papvpvavpl ppsapapipv pvpkapatis
      661 rqsstssdsg gsvardtqrq kqipvdrrks qmeevqdelv hrltigrsaa qrkfqvprpn
      721 vpvvnityds spedvrawlq skgfnpvtvn slgvltgaql fslnkeelrt vcpegsrvys
      781 qitvqksale ansgsselqe imrrrqekis aaatdsgves fdegssh
//
LOCUS       XP_053918557             795 aa            linear   VRT 09-MAR-2023
DEFINITION  epidermal growth factor receptor kinase substrate 8 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053918557
VERSION     XP_053918557.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062582.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..795
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..795
                     /product="epidermal growth factor receptor kinase
                     substrate 8 isoform X3"
                     /calculated_mol_wt=88724
     Region          61..191
                     /region_name="PTB_EPS8"
                     /note="Epidermal growth factor receptor kinase substrate
                     (EPS8)-like Phosphotyrosine-binding (PTB) domain; cd01210"
                     /db_xref="CDD:269921"
     Site            order(68,147,167)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:269921"
     Site            order(133..138,154,177,181)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:269921"
     Region          503..556
                     /region_name="SH3_Eps8"
                     /note="Src Homology 3 domain of Epidermal growth factor
                     receptor kinase substrate 8 and similar proteins; cd11764"
                     /db_xref="CDD:212698"
     Site            order(503..508,510,513,516..518,525..530,532..540,
                     545..548,552..556)
                     /site_type="other"
                     /note="swapped dimer interface [polypeptide binding]"
                     /db_xref="CDD:212698"
     Site            order(510,514..516,533..535,537,546..547,549..552)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212698"
     Region          693..757
                     /region_name="SAM_EPS8-like"
                     /note="SAM domain of EPS8-like subfamily; cd09540"
                     /db_xref="CDD:188939"
     CDS             1..795
                     /gene="EPS8"
                     /coded_by="XM_054062582.1:336..2723"
                     /db_xref="GeneID:104067842"
ORIGIN      
        1 mnghisntpp ggygsyfpqm ngygsptftq kereqnskts akalyeqrkn yardsassis
       61 etsqyhvehl ttfvldrkea mitvddglrk lklldakgkv wtqdmilqvd dkavslvdle
      121 sknelenfpl stiqhcqavm nacnynsila lvckeptqnk pdlhlfqcde ikatfihedi
      181 esaisdsksg kqkkrletlr miskadsaip ppprapapvp pgtitqvdvr srvaawsawa
      241 aeqgefekhr qyhdheetae miaaridrdv qilnhilddi eyfvtklqka aeafaelskr
      301 kktkkskkkg pgegvltlra kppppdefid cfqkfkhgfn llaklkfhiq npsaaelvhf
      361 lftplhmvvq ttggpelagt vlspllskdt idflrytvts eegqlwmslg dtwtkaradw
      421 pkdqfippyv prfrngwepp llnfmgapke qelnqlaesv anvaeqqrkq emkrlssepp
      481 svpdyppsdg nyeahskaqt kkyakckyef marnnselsv mkeeiveild drkqwwkvqn
      541 ksgstgfvpn nildplrnqe gglgwsepay trtiqkqrtd yvvkqpdpvp atpsppptpa
      601 pvpvavplpp sapapipvpv pkapatisrq sstssdsggs vardtqrqkq ipvdrrksqm
      661 eevqdelvhr ltigrsaaqr kfqvprpnvp vvnitydssp edvrawlqsk gfnpvtvnsl
      721 gvltgaqlfs lnkeelrtvc pegsrvysqi tvqksalean sgsselqeim rrrqekisaa
      781 atdsgvesfd egssh
//
LOCUS       XP_053918567             484 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase Mdm2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053918567
VERSION     XP_053918567.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062592.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..484
                     /product="E3 ubiquitin-protein ligase Mdm2 isoform X1"
                     /calculated_mol_wt=55141
     Region          21..103
                     /region_name="MDM2"
                     /note="p53-binding domain found in E3 ubiquitin-protein
                     ligase MDM2 and similar proteins; cd17672"
                     /db_xref="CDD:349491"
     Site            order(50,53..54,57..58,63,68,89..90,92,95..96)
                     /site_type="other"
                     /note="p53 binding site [polypeptide binding]"
                     /db_xref="CDD:349491"
     Region          294..323
                     /region_name="zf-RanBP"
                     /note="Zn-finger in Ran binding protein and others;
                     pfam00641"
                     /db_xref="CDD:395516"
     Region          428..484
                     /region_name="mRING-HC-C2H2C4_MDM2"
                     /note="Modified RING finger, HC subclass (C2H2C4-type),
                     found in E3 ubiquitin-protein ligase MDM2 and similar
                     proteins; cd16783"
                     /db_xref="CDD:438438"
     Site            order(442,444,446..452,470,477,479..480)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:438438"
     CDS             1..484
                     /gene="MDM2"
                     /coded_by="XM_054062592.1:161..1615"
                     /db_xref="GeneID:104061323"
ORIGIN      
        1 mcntemsslt dasavtaser ealvrpkpll lrllklagae kdtftmkevi fylgqyimsk
       61 qlydekqqhi vhcandllgd lfgvtsfsvk ehrrlysmis rnliavsqqd srhadtpedd
      121 arfqleeens lkesiqelee kqtssnvtsr pttssrrrth seseenssdd lhsdrrkrhk
      181 sdsisltfde slswcvvsgl crersnssds tdslsipdld asslsensdw fdhssvsdqf
      241 svefevesiy sedynhneeg qeltdeddev yqltiyqded sdadsfdedp eisladywkc
      301 pecsemnppl prhchrcwal redwlpdeks dksvkskles slpleseegf dvpdckkvkm
      361 iedkepalee nedkaaqise sqesedysqp stsssmfcss qedykepekr etqdkeesie
      421 sslpvtsiep cvicqsrpkn gcivhgktgh lmscftcark lkkrnkpcpv crqpiqmivl
      481 tyfs
//
LOCUS       XP_053918576             483 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase Mdm2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053918576
VERSION     XP_053918576.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062601.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..483
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..483
                     /product="E3 ubiquitin-protein ligase Mdm2 isoform X2"
                     /calculated_mol_wt=55012
     Region          21..103
                     /region_name="MDM2"
                     /note="p53-binding domain found in E3 ubiquitin-protein
                     ligase MDM2 and similar proteins; cd17672"
                     /db_xref="CDD:349491"
     Site            order(50,53..54,57..58,63,68,89..90,92,95..96)
                     /site_type="other"
                     /note="p53 binding site [polypeptide binding]"
                     /db_xref="CDD:349491"
     Region          293..322
                     /region_name="zf-RanBP"
                     /note="Zn-finger in Ran binding protein and others;
                     pfam00641"
                     /db_xref="CDD:395516"
     Region          427..483
                     /region_name="mRING-HC-C2H2C4_MDM2"
                     /note="Modified RING finger, HC subclass (C2H2C4-type),
                     found in E3 ubiquitin-protein ligase MDM2 and similar
                     proteins; cd16783"
                     /db_xref="CDD:438438"
     Site            order(441,443,445..451,469,476,478..479)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:438438"
     CDS             1..483
                     /gene="MDM2"
                     /coded_by="XM_054062601.1:161..1612"
                     /db_xref="GeneID:104061323"
ORIGIN      
        1 mcntemsslt dasavtaser ealvrpkpll lrllklagae kdtftmkevi fylgqyimsk
       61 qlydekqqhi vhcandllgd lfgvtsfsvk ehrrlysmis rnliavsqqd srhadtpedd
      121 arfqleeens lkesiqelee kqtssnvtsr pttssrrrth sesenssddl hsdrrkrhks
      181 dsisltfdes lswcvvsglc rersnssdst dslsipdlda sslsensdwf dhssvsdqfs
      241 vefevesiys edynhneegq eltdeddevy qltiyqdeds dadsfdedpe isladywkcp
      301 ecsemnpplp rhchrcwalr edwlpdeksd ksvkskless lpleseegfd vpdckkvkmi
      361 edkepaleen edkaaqises qesedysqps tsssmfcssq edykepekre tqdkeesies
      421 slpvtsiepc vicqsrpkng civhgktghl mscftcarkl kkrnkpcpvc rqpiqmivlt
      481 yfs
//
LOCUS       XP_053918585             484 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase Mdm2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053918585
VERSION     XP_053918585.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062610.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..484
                     /product="E3 ubiquitin-protein ligase Mdm2 isoform X1"
                     /calculated_mol_wt=55141
     Region          21..103
                     /region_name="MDM2"
                     /note="p53-binding domain found in E3 ubiquitin-protein
                     ligase MDM2 and similar proteins; cd17672"
                     /db_xref="CDD:349491"
     Site            order(50,53..54,57..58,63,68,89..90,92,95..96)
                     /site_type="other"
                     /note="p53 binding site [polypeptide binding]"
                     /db_xref="CDD:349491"
     Region          294..323
                     /region_name="zf-RanBP"
                     /note="Zn-finger in Ran binding protein and others;
                     pfam00641"
                     /db_xref="CDD:395516"
     Region          428..484
                     /region_name="mRING-HC-C2H2C4_MDM2"
                     /note="Modified RING finger, HC subclass (C2H2C4-type),
                     found in E3 ubiquitin-protein ligase MDM2 and similar
                     proteins; cd16783"
                     /db_xref="CDD:438438"
     Site            order(442,444,446..452,470,477,479..480)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:438438"
     CDS             1..484
                     /gene="MDM2"
                     /coded_by="XM_054062610.1:100..1554"
                     /db_xref="GeneID:104061323"
ORIGIN      
        1 mcntemsslt dasavtaser ealvrpkpll lrllklagae kdtftmkevi fylgqyimsk
       61 qlydekqqhi vhcandllgd lfgvtsfsvk ehrrlysmis rnliavsqqd srhadtpedd
      121 arfqleeens lkesiqelee kqtssnvtsr pttssrrrth seseenssdd lhsdrrkrhk
      181 sdsisltfde slswcvvsgl crersnssds tdslsipdld asslsensdw fdhssvsdqf
      241 svefevesiy sedynhneeg qeltdeddev yqltiyqded sdadsfdedp eisladywkc
      301 pecsemnppl prhchrcwal redwlpdeks dksvkskles slpleseegf dvpdckkvkm
      361 iedkepalee nedkaaqise sqesedysqp stsssmfcss qedykepekr etqdkeesie
      421 sslpvtsiep cvicqsrpkn gcivhgktgh lmscftcark lkkrnkpcpv crqpiqmivl
      481 tyfs
//
LOCUS       XP_053918597             446 aa            linear   VRT 09-MAR-2023
DEFINITION  carboxypeptidase M [Cuculus canorus].
ACCESSION   XP_053918597
VERSION     XP_053918597.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062622.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..446
                     /product="carboxypeptidase M"
                     /calculated_mol_wt=50131
     Region          28..316
                     /region_name="M14_CPM"
                     /note="Peptidase M14 carboxypeptidase subfamily N/E-like;
                     Carboxypeptidase M subgroup; cd03866"
                     /db_xref="CDD:349438"
     Site            order(89,92,150,159..160,196..197,203,207,261,265,267,287)
                     /site_type="active"
                     /db_xref="CDD:349438"
     Region          320..399
                     /region_name="Peptidase_M14NE-CP-C_like"
                     /note="Peptidase associated domain: C-terminal domain of
                     M14 N/E carboxypeptidase; putative folding, regulation, or
                     interaction domain; cd11308"
                     /db_xref="CDD:200604"
     CDS             1..446
                     /gene="CPM"
                     /coded_by="XM_054062622.1:134..1474"
                     /db_xref="GeneID:104061313"
ORIGIN      
        1 mrtaprdavt illllllvra aaaldfryhh teeleaylkg iraahpaith lhsigrsveg
       61 rdlwvlvlgr fpthhkigip efkyvanmhg detvgrelll hlidflvtsy grdpvitkll
      121 nntrihimpt mnpdgfeatk vphcyysqgr fnkngedlnr nfpdafennn atiqpetrav
      181 mnwiknetfv lsanlhggal vasytfdngn svtgslqgys rspdddvfih laktysynha
      241 rmhkgigcdn rqtfsegitn gyswyrlegg mqdynyvwgq cfeitlelsc ckyppedqle
      301 kfwrdnkval ieyikqvhlg vkgqvtdgng npipnaivea qgrphvcpyr tnqqgeyfll
      361 llpgtyeina tvpgfksmvk tveipdntgn fsalkqdfsf sevsfqsraa scpktplyqe
      421 ferssaavka tphvlaliti vlvifk
//
LOCUS       XP_053918608             626 aa            linear   VRT 09-MAR-2023
DEFINITION  ETS-related transcription factor Elf-1 [Cuculus canorus].
ACCESSION   XP_053918608
VERSION     XP_053918608.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062633.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..626
                     /product="ETS-related transcription factor Elf-1"
                     /calculated_mol_wt=68455
     Region          2..109
                     /region_name="Elf-1_N"
                     /note="Transcription factor protein N terminal; pfam12310"
                     /db_xref="CDD:463529"
     Region          204..286
                     /region_name="ETS"
                     /note="erythroblast transformation specific domain;
                     smart00413"
                     /db_xref="CDD:197710"
     CDS             1..626
                     /gene="ELF1"
                     /coded_by="XM_054062633.1:303..2183"
                     /db_xref="GeneID:104056521"
ORIGIN      
        1 maaivqqnel vfefasnvme deqqlgdpsi fpavivehvp sadllhnysg ltcvdepsdm
       61 itensldvae eqiiedddit ltveaschng detmetieaa eallnmdspg pmldekritt
      121 mfgttedddm vapithvsvt ldgipevvev hqtpdpyaes petpefeqpk kkkgkkpkpa
      181 rpesptttpn isvkkknkdg kgntiylwef llallqdkat cpkyikwtqr ekgifklvds
      241 kavsrlwgkh knkpdmnyet mgralryyyq rgilakvegq rlvyqfkemp kdliyidded
      301 aspstessds tllstpvanr nqssrsrasa nagtkggstt vlktgnskpa klkehvevvq
      361 qqtpgltsev lrtmqspqpv hptqlfrtlh vmqplqslte ghaavtsnvp detfnpsvqn
      421 irtlqtptqv pvvvspgnqq lhtvtlqtvp lttviastdp asatpppkfi lqaiptsqpm
      481 tvlkenvmlp sqkpvsppss ivlspaqvqq vltssvqtic ngtvnmassp sfsattpvvt
      541 fspsssqvva hpsgtvitsv ikapetkqig iqqvvkeeds dklddteqte qrfqqqpfvm
      601 vvsspngfpp nvqvkqenep lepasy
//
LOCUS       XP_053918618             626 aa            linear   VRT 09-MAR-2023
DEFINITION  ETS-related transcription factor Elf-1 [Cuculus canorus].
ACCESSION   XP_053918618
VERSION     XP_053918618.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062643.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..626
                     /product="ETS-related transcription factor Elf-1"
                     /calculated_mol_wt=68455
     Region          2..109
                     /region_name="Elf-1_N"
                     /note="Transcription factor protein N terminal; pfam12310"
                     /db_xref="CDD:463529"
     Region          204..286
                     /region_name="ETS"
                     /note="erythroblast transformation specific domain;
                     smart00413"
                     /db_xref="CDD:197710"
     CDS             1..626
                     /gene="ELF1"
                     /coded_by="XM_054062643.1:511..2391"
                     /db_xref="GeneID:104056521"
ORIGIN      
        1 maaivqqnel vfefasnvme deqqlgdpsi fpavivehvp sadllhnysg ltcvdepsdm
       61 itensldvae eqiiedddit ltveaschng detmetieaa eallnmdspg pmldekritt
      121 mfgttedddm vapithvsvt ldgipevvev hqtpdpyaes petpefeqpk kkkgkkpkpa
      181 rpesptttpn isvkkknkdg kgntiylwef llallqdkat cpkyikwtqr ekgifklvds
      241 kavsrlwgkh knkpdmnyet mgralryyyq rgilakvegq rlvyqfkemp kdliyidded
      301 aspstessds tllstpvanr nqssrsrasa nagtkggstt vlktgnskpa klkehvevvq
      361 qqtpgltsev lrtmqspqpv hptqlfrtlh vmqplqslte ghaavtsnvp detfnpsvqn
      421 irtlqtptqv pvvvspgnqq lhtvtlqtvp lttviastdp asatpppkfi lqaiptsqpm
      481 tvlkenvmlp sqkpvsppss ivlspaqvqq vltssvqtic ngtvnmassp sfsattpvvt
      541 fspsssqvva hpsgtvitsv ikapetkqig iqqvvkeeds dklddteqte qrfqqqpfvm
      601 vvsspngfpp nvqvkqenep lepasy
//
LOCUS       XP_053918624             626 aa            linear   VRT 09-MAR-2023
DEFINITION  ETS-related transcription factor Elf-1 [Cuculus canorus].
ACCESSION   XP_053918624
VERSION     XP_053918624.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062649.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..626
                     /product="ETS-related transcription factor Elf-1"
                     /calculated_mol_wt=68455
     Region          2..109
                     /region_name="Elf-1_N"
                     /note="Transcription factor protein N terminal; pfam12310"
                     /db_xref="CDD:463529"
     Region          204..286
                     /region_name="ETS"
                     /note="erythroblast transformation specific domain;
                     smart00413"
                     /db_xref="CDD:197710"
     CDS             1..626
                     /gene="ELF1"
                     /coded_by="XM_054062649.1:392..2272"
                     /db_xref="GeneID:104056521"
ORIGIN      
        1 maaivqqnel vfefasnvme deqqlgdpsi fpavivehvp sadllhnysg ltcvdepsdm
       61 itensldvae eqiiedddit ltveaschng detmetieaa eallnmdspg pmldekritt
      121 mfgttedddm vapithvsvt ldgipevvev hqtpdpyaes petpefeqpk kkkgkkpkpa
      181 rpesptttpn isvkkknkdg kgntiylwef llallqdkat cpkyikwtqr ekgifklvds
      241 kavsrlwgkh knkpdmnyet mgralryyyq rgilakvegq rlvyqfkemp kdliyidded
      301 aspstessds tllstpvanr nqssrsrasa nagtkggstt vlktgnskpa klkehvevvq
      361 qqtpgltsev lrtmqspqpv hptqlfrtlh vmqplqslte ghaavtsnvp detfnpsvqn
      421 irtlqtptqv pvvvspgnqq lhtvtlqtvp lttviastdp asatpppkfi lqaiptsqpm
      481 tvlkenvmlp sqkpvsppss ivlspaqvqq vltssvqtic ngtvnmassp sfsattpvvt
      541 fspsssqvva hpsgtvitsv ikapetkqig iqqvvkeeds dklddteqte qrfqqqpfvm
      601 vvsspngfpp nvqvkqenep lepasy
//
LOCUS       XP_053918630             626 aa            linear   VRT 09-MAR-2023
DEFINITION  ETS-related transcription factor Elf-1 [Cuculus canorus].
ACCESSION   XP_053918630
VERSION     XP_053918630.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062655.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..626
                     /product="ETS-related transcription factor Elf-1"
                     /calculated_mol_wt=68455
     Region          2..109
                     /region_name="Elf-1_N"
                     /note="Transcription factor protein N terminal; pfam12310"
                     /db_xref="CDD:463529"
     Region          204..286
                     /region_name="ETS"
                     /note="erythroblast transformation specific domain;
                     smart00413"
                     /db_xref="CDD:197710"
     CDS             1..626
                     /gene="ELF1"
                     /coded_by="XM_054062655.1:358..2238"
                     /db_xref="GeneID:104056521"
ORIGIN      
        1 maaivqqnel vfefasnvme deqqlgdpsi fpavivehvp sadllhnysg ltcvdepsdm
       61 itensldvae eqiiedddit ltveaschng detmetieaa eallnmdspg pmldekritt
      121 mfgttedddm vapithvsvt ldgipevvev hqtpdpyaes petpefeqpk kkkgkkpkpa
      181 rpesptttpn isvkkknkdg kgntiylwef llallqdkat cpkyikwtqr ekgifklvds
      241 kavsrlwgkh knkpdmnyet mgralryyyq rgilakvegq rlvyqfkemp kdliyidded
      301 aspstessds tllstpvanr nqssrsrasa nagtkggstt vlktgnskpa klkehvevvq
      361 qqtpgltsev lrtmqspqpv hptqlfrtlh vmqplqslte ghaavtsnvp detfnpsvqn
      421 irtlqtptqv pvvvspgnqq lhtvtlqtvp lttviastdp asatpppkfi lqaiptsqpm
      481 tvlkenvmlp sqkpvsppss ivlspaqvqq vltssvqtic ngtvnmassp sfsattpvvt
      541 fspsssqvva hpsgtvitsv ikapetkqig iqqvvkeeds dklddteqte qrfqqqpfvm
      601 vvsspngfpp nvqvkqenep lepasy
//
LOCUS       XP_053918638             626 aa            linear   VRT 09-MAR-2023
DEFINITION  ETS-related transcription factor Elf-1 [Cuculus canorus].
ACCESSION   XP_053918638
VERSION     XP_053918638.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062663.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..626
                     /product="ETS-related transcription factor Elf-1"
                     /calculated_mol_wt=68455
     Region          2..109
                     /region_name="Elf-1_N"
                     /note="Transcription factor protein N terminal; pfam12310"
                     /db_xref="CDD:463529"
     Region          204..286
                     /region_name="ETS"
                     /note="erythroblast transformation specific domain;
                     smart00413"
                     /db_xref="CDD:197710"
     CDS             1..626
                     /gene="ELF1"
                     /coded_by="XM_054062663.1:261..2141"
                     /db_xref="GeneID:104056521"
ORIGIN      
        1 maaivqqnel vfefasnvme deqqlgdpsi fpavivehvp sadllhnysg ltcvdepsdm
       61 itensldvae eqiiedddit ltveaschng detmetieaa eallnmdspg pmldekritt
      121 mfgttedddm vapithvsvt ldgipevvev hqtpdpyaes petpefeqpk kkkgkkpkpa
      181 rpesptttpn isvkkknkdg kgntiylwef llallqdkat cpkyikwtqr ekgifklvds
      241 kavsrlwgkh knkpdmnyet mgralryyyq rgilakvegq rlvyqfkemp kdliyidded
      301 aspstessds tllstpvanr nqssrsrasa nagtkggstt vlktgnskpa klkehvevvq
      361 qqtpgltsev lrtmqspqpv hptqlfrtlh vmqplqslte ghaavtsnvp detfnpsvqn
      421 irtlqtptqv pvvvspgnqq lhtvtlqtvp lttviastdp asatpppkfi lqaiptsqpm
      481 tvlkenvmlp sqkpvsppss ivlspaqvqq vltssvqtic ngtvnmassp sfsattpvvt
      541 fspsssqvva hpsgtvitsv ikapetkqig iqqvvkeeds dklddteqte qrfqqqpfvm
      601 vvsspngfpp nvqvkqenep lepasy
//
LOCUS       XP_053918646             626 aa            linear   VRT 09-MAR-2023
DEFINITION  ETS-related transcription factor Elf-1 [Cuculus canorus].
ACCESSION   XP_053918646
VERSION     XP_053918646.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062671.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..626
                     /product="ETS-related transcription factor Elf-1"
                     /calculated_mol_wt=68455
     Region          2..109
                     /region_name="Elf-1_N"
                     /note="Transcription factor protein N terminal; pfam12310"
                     /db_xref="CDD:463529"
     Region          204..286
                     /region_name="ETS"
                     /note="erythroblast transformation specific domain;
                     smart00413"
                     /db_xref="CDD:197710"
     CDS             1..626
                     /gene="ELF1"
                     /coded_by="XM_054062671.1:258..2138"
                     /db_xref="GeneID:104056521"
ORIGIN      
        1 maaivqqnel vfefasnvme deqqlgdpsi fpavivehvp sadllhnysg ltcvdepsdm
       61 itensldvae eqiiedddit ltveaschng detmetieaa eallnmdspg pmldekritt
      121 mfgttedddm vapithvsvt ldgipevvev hqtpdpyaes petpefeqpk kkkgkkpkpa
      181 rpesptttpn isvkkknkdg kgntiylwef llallqdkat cpkyikwtqr ekgifklvds
      241 kavsrlwgkh knkpdmnyet mgralryyyq rgilakvegq rlvyqfkemp kdliyidded
      301 aspstessds tllstpvanr nqssrsrasa nagtkggstt vlktgnskpa klkehvevvq
      361 qqtpgltsev lrtmqspqpv hptqlfrtlh vmqplqslte ghaavtsnvp detfnpsvqn
      421 irtlqtptqv pvvvspgnqq lhtvtlqtvp lttviastdp asatpppkfi lqaiptsqpm
      481 tvlkenvmlp sqkpvsppss ivlspaqvqq vltssvqtic ngtvnmassp sfsattpvvt
      541 fspsssqvva hpsgtvitsv ikapetkqig iqqvvkeeds dklddteqte qrfqqqpfvm
      601 vvsspngfpp nvqvkqenep lepasy
//
LOCUS       XP_053918656             386 aa            linear   VRT 09-MAR-2023
DEFINITION  WW domain-binding protein 4 isoform X1 [Cuculus canorus].
ACCESSION   XP_053918656
VERSION     XP_053918656.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062681.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..386
                     /product="WW domain-binding protein 4 isoform X1"
                     /calculated_mol_wt=43765
     Region          8..44
                     /region_name="zf-U1"
                     /note="U1 zinc finger; pfam06220"
                     /db_xref="CDD:368798"
     Region          130..>204
                     /region_name="PRP40"
                     /note="Splicing factor [RNA processing and modification];
                     COG5104"
                     /db_xref="CDD:227435"
     CDS             1..386
                     /gene="WBP4"
                     /coded_by="XM_054062681.1:121..1281"
                     /db_xref="GeneID:104056537"
ORIGIN      
        1 madywksqpk kfcdyckcwi adnrpsidfh ergknhkenv akriseikqk sldkakeeen
       61 lskefaamee aamkayqedl krlgikpddv gpsstqsktq sntvetkgkk ekkekkekke
      121 kkkktpqdas mppktetkew vqgfspegyt yyyntktges qwekpkgfrg nsqtaaewve
      181 gvtedghtyy yntqtgvstw ekpdgfvsss neksqrdkns gelasesdse dseneaqgse
      241 tnlkrkgdng eeseegkksl kakklspygk wrevkpaetv dkeestsets gdadnktnpy
      301 gkwkalpekk eeeeeescek vdlelpstes eslappvled aedetvifke ktvtslgdlt
      361 egvptfkkrk fengksrnlr qrlsdq
//
LOCUS       XP_053918662             319 aa            linear   VRT 09-MAR-2023
DEFINITION  WW domain-binding protein 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053918662
VERSION     XP_053918662.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062687.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..319
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..319
                     /product="WW domain-binding protein 4 isoform X2"
                     /calculated_mol_wt=35820
     Region          63..>137
                     /region_name="PRP40"
                     /note="Splicing factor [RNA processing and modification];
                     COG5104"
                     /db_xref="CDD:227435"
     CDS             1..319
                     /gene="WBP4"
                     /coded_by="XM_054062687.1:390..1349"
                     /db_xref="GeneID:104056537"
ORIGIN      
        1 meeaamkayq edlkrlgikp ddvgpsstqs ktqsntvetk gkkekkekke kkekkkktpq
       61 dasmppktet kewvqgfspe gytyyyntkt gesqwekpkg frgnsqtaae wvegvtedgh
      121 tyyyntqtgv stwekpdgfv sssneksqrd knsgelases dsedseneaq gsetnlkrkg
      181 dngeeseegk kslkakklsp ygkwrevkpa etvdkeests etsgdadnkt npygkwkalp
      241 ekkeeeeees cekvdlelps teseslappv ledaedetvi fkektvtslg dltegvptfk
      301 krkfengksr nlrqrlsdq
//
LOCUS       XP_053918672             319 aa            linear   VRT 09-MAR-2023
DEFINITION  WW domain-binding protein 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053918672
VERSION     XP_053918672.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062697.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..319
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..319
                     /product="WW domain-binding protein 4 isoform X2"
                     /calculated_mol_wt=35820
     Region          63..>137
                     /region_name="PRP40"
                     /note="Splicing factor [RNA processing and modification];
                     COG5104"
                     /db_xref="CDD:227435"
     CDS             1..319
                     /gene="WBP4"
                     /coded_by="XM_054062697.1:383..1342"
                     /db_xref="GeneID:104056537"
ORIGIN      
        1 meeaamkayq edlkrlgikp ddvgpsstqs ktqsntvetk gkkekkekke kkekkkktpq
       61 dasmppktet kewvqgfspe gytyyyntkt gesqwekpkg frgnsqtaae wvegvtedgh
      121 tyyyntqtgv stwekpdgfv sssneksqrd knsgelases dsedseneaq gsetnlkrkg
      181 dngeeseegk kslkakklsp ygkwrevkpa etvdkeests etsgdadnkt npygkwkalp
      241 ekkeeeeees cekvdlelps teseslappv ledaedetvi fkektvtslg dltegvptfk
      301 krkfengksr nlrqrlsdq
//
LOCUS       XP_053918685             329 aa            linear   VRT 09-MAR-2023
DEFINITION  protein SGT1 homolog isoform X1 [Cuculus canorus].
ACCESSION   XP_053918685
VERSION     XP_053918685.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062710.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..329
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..329
                     /product="protein SGT1 homolog isoform X1"
                     /calculated_mol_wt=37224
     Region          12..329
                     /region_name="PLN03088"
                     /note="SGT1, suppressor of G2 allele of SKP1; Provisional"
                     /db_xref="CDD:215568"
     Region          36..66
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          71..99
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..329
                     /gene="SUGT1"
                     /coded_by="XM_054062710.1:135..1124"
                     /db_xref="GeneID:104056522"
ORIGIN      
        1 maaaapsprf seadidrdpg aaaqelttal eknpddaeyy cqrayahill qkyadavada
       61 kkslelnpnn avallrkglg eyhiknyvsa lesfregqkl dnvddtftiw ikrceetlnv
      121 sqtegnaqqq plppkikydw yqteshvivt imiknaqkdd vsvqfsekem nasvrlpsge
      181 dcnlklvllh silpeqstfk vlstkveikl kkpeavrwek legqgdspkl kqitpdtqhl
      241 ypssshymrn wdklvveike eekneklegd aalnklfqqi ysdgtdevkr amnksfmesg
      301 gtvlstnwsd vgkrkvevnp pddmewkqf
//
LOCUS       XP_053918692             293 aa            linear   VRT 09-MAR-2023
DEFINITION  protein SGT1 homolog isoform X2 [Cuculus canorus].
ACCESSION   XP_053918692
VERSION     XP_053918692.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062717.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..293
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..293
                     /product="protein SGT1 homolog isoform X2"
                     /calculated_mol_wt=33272
     Region          12..293
                     /region_name="PLN03088"
                     /note="SGT1, suppressor of G2 allele of SKP1; Provisional"
                     /db_xref="CDD:215568"
     Region          36..66
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          71..99
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..293
                     /gene="SUGT1"
                     /coded_by="XM_054062717.1:141..1022"
                     /db_xref="GeneID:104056522"
ORIGIN      
        1 maaaapsprf seadidrdpg aaaqelttal eknpddaeyy cqrayahill qkyadavada
       61 kkslelnpnn avallrkglg eyhiknyvsa lesfregqkl dnvddtftiw ikrceetlnv
      121 sqtegnaqqq plppkikydw yqteshvivt imiknaqkdd vsvqfsekev eiklkkpeav
      181 rweklegqgd spklkqitpd tqhlypsssh ymrnwdklvv eikeeeknek legdaalnkl
      241 fqqiysdgtd evkramnksf mesggtvlst nwsdvgkrkv evnppddmew kqf
//
LOCUS       XP_053918705             779 aa            linear   VRT 09-MAR-2023
DEFINITION  pendrin isoform X1 [Cuculus canorus].
ACCESSION   XP_053918705
VERSION     XP_053918705.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062730.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..779
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..779
                     /product="pendrin isoform X1"
                     /calculated_mol_wt=85911
     Region          67..724
                     /region_name="PRK11660"
                     /note="putative transporter; Provisional; cl46980"
                     /db_xref="CDD:481320"
     CDS             1..779
                     /gene="SLC26A4"
                     /coded_by="XM_054062730.1:121..2460"
                     /db_xref="GeneID:104056089"
ORIGIN      
        1 maaggrpeqp paepgryvvs rpvysqagfq eenerrpppp ptlrerlqra srcsrkrafq
       61 itksflpile wlpnyrvrew lisdlisgvs tglvatlqgl ayallvavpv gyglysaffp
      121 iltyfflgts rhisvgpfpv vslmvgsvvl smapddnfli dginatgtng tgalidiesr
      181 daqrvliast ltflvgilqv vfgvlqigfi vryladplvg gfttaaafqv lvsqlkivln
      241 vstknyngvl siiytlietf ekigttniad liaglltifi cmvvkeindr fkhkipipip
      301 ievivtivat gisyaadlek kynagivksi prgflppepp dvslfsqmia asfsiaivay
      361 aiavsvgkvy atkydyaidg nqefiafgls nifsgafscf vattalsrta vqestggktq
      421 vagivsaviv lisivalgkl leplqksvla avvianlkgm fmqvfdvprl wrqnkvdami
      481 wvftcvasii lgldlgllag llfglltvvl rvqfpswggf gnipgtdiyk kvkdyknvie
      541 pegvkilrfs spifyanidg lksslkstvg fdavkvynkr lkalrkiqkl ikkgklkatk
      601 ngiisepgin neafetdeep ednedlqvpt keveiqvdwn selpvkvnip rvpihslild
      661 fgavtfldiv avrsiktiik eferidvrvy fasyqdnlis qlersaffdd ivrkdmfflt
      721 vhdavlyirn qmtyrdnqdp ifekislmqe skepieftet srpddeldvq eeamrrlas
//
LOCUS       XP_053918715             674 aa            linear   VRT 09-MAR-2023
DEFINITION  pendrin isoform X2 [Cuculus canorus].
ACCESSION   XP_053918715
VERSION     XP_053918715.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062740.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..674
                     /product="pendrin isoform X2"
                     /calculated_mol_wt=74009
     Region          25..619
                     /region_name="PRK11660"
                     /note="putative transporter; Provisional; cl46980"
                     /db_xref="CDD:481320"
     CDS             1..674
                     /gene="SLC26A4"
                     /coded_by="XM_054062740.1:128..2152"
                     /db_xref="GeneID:104056089"
ORIGIN      
        1 mdniiflpva etqnlcvhss lalgphikam gpfpvvslmv gsvvlsmapd dnflidgina
       61 tgtngtgali diesrdaqrv liastltflv gilqvvfgvl qigfivryla dplvggftta
      121 aafqvlvsql kivlnvstkn yngvlsiiyt lietfekigt tniadliagl ltificmvvk
      181 eindrfkhki pipipieviv tivatgisya adlekkynag ivksiprgfl ppeppdvslf
      241 sqmiaasfsi aivayaiavs vgkvyatkyd yaidgnqefi afglsnifsg afscfvatta
      301 lsrtavqest ggktqvagiv savivlisiv algklleplq ksvlaavvia nlkgmfmqvf
      361 dvprlwrqnk vdamiwvftc vasiilgldl gllagllfgl ltvvlrvqfp swggfgnipg
      421 tdiykkvkdy knviepegvk ilrfsspify anidglkssl kstvgfdavk vynkrlkalr
      481 kiqklikkgk lkatkngiis epginneafe tdeepedned lqvptkevei qvdwnselpv
      541 kvniprvpih slildfgavt fldivavrsi ktiikeferi dvrvyfasyq dnlisqlers
      601 affddivrkd mffltvhdav lyirnqmtyr dnqdpifeki slmqeskepi eftetsrpdd
      661 eldvqeeamr rlas
//
LOCUS       XP_009555566             755 aa            linear   VRT 09-MAR-2023
DEFINITION  chloride anion exchanger [Cuculus canorus].
ACCESSION   XP_009555566
VERSION     XP_009555566.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557271.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555566.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..755
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..755
                     /product="chloride anion exchanger"
                     /calculated_mol_wt=83516
     Region          59..706
                     /region_name="PRK11660"
                     /note="putative transporter; Provisional; cl46980"
                     /db_xref="CDD:481320"
     CDS             1..755
                     /gene="SLC26A3"
                     /coded_by="XM_009557271.2:266..2533"
                     /db_xref="GeneID:104056063"
ORIGIN      
        1 mvepvgnhyv varpvysenl fneeheklhr yhktfwdhlk lyfryspqra kkialglfpi
       61 iswlpayrfr ewilsdivsg intglvavlq glafallvnv ppsyglyaaf fpvlvyfifg
      121 tsrhisvgpf pvlslmvggv vvrlvpddis gnanstnmsa ineervmvaa svtflsgvfq
      181 lllgilqfgf iviylsqsli sgfttaaaih vlvsqlkfml qlpvpgfnkp fgiiytlesi
      241 ftqitktnia dlitslvvlv ivfvvkeind rykaklptpi piellvtvla alisyyvnfe
      301 ekfnvavvgk leegfhmpva pdasilqkci gdgisiaivg favafsvakv ysikhdypld
      361 snqeliafgl gnivggsfkg fasstalsrs gvqestggkt qiagiisaii vlivilaigf
      421 llaplqksvl aslalgnlkg mlmqfkevgi lwrkdkydcv iwvvtflaav flgldiglat
      481 avafqlltvv frsqipsctl lanvgrsniy rnrkdytdiy epegvkifrc aspiffanie
      541 ffrdklitav gfnplrvlrk rnkalrkirk mlkkgelqvt pkglicmanh tqesdeeldn
      601 dmieeldqpt smtdlpihin wgtdlpagit vprvdihsii ldfssvsfld fsatrvlqkt
      661 lkefiridid iyitgahegf leklvrsaff deeikpsmff ltihdavlhi llkkdiassp
      721 klkltkekgs snscivipsn glcsqehais tetkf
//
LOCUS       XP_009555567             493 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase Hakai isoform X1 [Cuculus canorus].
ACCESSION   XP_009555567
VERSION     XP_009555567.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557272.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..493
                     /product="E3 ubiquitin-protein ligase Hakai isoform X1"
                     /calculated_mol_wt=54766
     Region          107..161
                     /region_name="RING-HC_HAKAI-like"
                     /note="RING finger, HC subclass, found in E3
                     ubiquitin-protein ligase Hakai, zinc finger protein 645
                     (ZNF645), and similar proteins; cd16508"
                     /db_xref="CDD:438171"
     Site            order(121,125..128)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:438171"
     Region          161..192
                     /region_name="zf_Hakai"
                     /note="C2H2 Hakai zinc finger domain; pfam18408"
                     /db_xref="CDD:465753"
     CDS             1..493
                     /gene="CBLL1"
                     /coded_by="XM_009557272.2:319..1800"
                     /db_xref="GeneID:104056064"
ORIGIN      
        1 mdhndndlqg tnssgslggl dvrrripikl iskqtnktkp aprtprsmnr mpsktqagde
       61 eefdyneeer yeckggemfg nqrrfpgpif wdykinllge kddtpvhfcd kcglpikmyg
      121 rmipckhvfc ydcailhekk gdkmcpgcne pvqrieqcvr gslfmcsivq gckrtylsqr
      181 dlqahinhrh mragkpvtrp piepvhppia pppaeiperf imppekhhms hippkqhimm
      241 pppplqhvph ehynpphedi rappaemsma pppprpvsqd tfristrkhs nlitvpiqdd
      301 snsgareppp papapahhhp eyqgqpvvsh phhimppqqh yapppppppp ishplqhppq
      361 aagtphmvys qappppmtsa pppitpppgh iiaqmppymn hpppgppppq hggppvnvna
      421 ppphhynpns lpqfsedqgt lsppftqpgg mspgiwpapr gppppprmqg ppaqaplpgp
      481 hhpdqaryrp yyq
//
LOCUS       XP_009555568             492 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase Hakai isoform X2 [Cuculus canorus].
ACCESSION   XP_009555568
VERSION     XP_009555568.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557273.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..492
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..492
                     /product="E3 ubiquitin-protein ligase Hakai isoform X2"
                     /calculated_mol_wt=54637
     Region          106..160
                     /region_name="RING-HC_HAKAI-like"
                     /note="RING finger, HC subclass, found in E3
                     ubiquitin-protein ligase Hakai, zinc finger protein 645
                     (ZNF645), and similar proteins; cd16508"
                     /db_xref="CDD:438171"
     Site            order(120,124..127)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:438171"
     Region          160..191
                     /region_name="zf_Hakai"
                     /note="C2H2 Hakai zinc finger domain; pfam18408"
                     /db_xref="CDD:465753"
     CDS             1..492
                     /gene="CBLL1"
                     /coded_by="XM_009557273.2:332..1810"
                     /db_xref="GeneID:104056064"
ORIGIN      
        1 mdhndndlqg tnssgslggl dvrrripikl iskqtnktkp aprtprsmnr mpsktqagde
       61 efdyneeery eckggemfgn qrrfpgpifw dykinllgek ddtpvhfcdk cglpikmygr
      121 mipckhvfcy dcailhekkg dkmcpgcnep vqrieqcvrg slfmcsivqg ckrtylsqrd
      181 lqahinhrhm ragkpvtrpp iepvhppiap ppaeiperfi mppekhhmsh ippkqhimmp
      241 ppplqhvphe hynpphedir appaemsmap ppprpvsqdt fristrkhsn litvpiqdds
      301 nsgarepppp apapahhhpe yqgqpvvshp hhimppqqhy appppppppi shplqhppqa
      361 agtphmvysq appppmtsap ppitpppghi iaqmppymnh pppgppppqh ggppvnvnap
      421 pphhynpnsl pqfsedqgtl sppftqpggm spgiwpaprg ppppprmqgp paqaplpgph
      481 hpdqaryrpy yq
//
LOCUS       XP_053918754             446 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase Hakai isoform X3 [Cuculus canorus].
ACCESSION   XP_053918754
VERSION     XP_053918754.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062779.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..446
                     /product="E3 ubiquitin-protein ligase Hakai isoform X3"
                     /calculated_mol_wt=49612
     Region          60..114
                     /region_name="RING-HC_HAKAI-like"
                     /note="RING finger, HC subclass, found in E3
                     ubiquitin-protein ligase Hakai, zinc finger protein 645
                     (ZNF645), and similar proteins; cd16508"
                     /db_xref="CDD:438171"
     Site            order(74,78..81)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:438171"
     Region          114..145
                     /region_name="zf_Hakai"
                     /note="C2H2 Hakai zinc finger domain; pfam18408"
                     /db_xref="CDD:465753"
     CDS             1..446
                     /gene="CBLL1"
                     /coded_by="XM_054062779.1:319..1659"
                     /db_xref="GeneID:104056064"
ORIGIN      
        1 mnrmpsktqa gdeeefdyne eeryeckgge mfgnqrrfpg pifwdykinl lgekddtpvh
       61 fcdkcglpik mygrmipckh vfcydcailh ekkgdkmcpg cnepvqrieq cvrgslfmcs
      121 ivqgckrtyl sqrdlqahin hrhmragkpv trppiepvhp piapppaeip erfimppekh
      181 hmshippkqh immpppplqh vphehynpph edirappaem smapppprpv sqdtfristr
      241 khsnlitvpi qddsnsgare ppppapapah hhpeyqgqpv vshphhimpp qqhyappppp
      301 pppishplqh ppqaagtphm vysqappppm tsapppitpp pghiiaqmpp ymnhpppgpp
      361 ppqhggppvn vnappphhyn pnslpqfsed qgtlsppftq pggmspgiwp aprgpppppr
      421 mqgppaqapl pgphhpdqar yrpyyq
//
LOCUS       XP_009563420            1709 aa            linear   VRT 09-MAR-2023
DEFINITION  pre-mRNA cleavage complex 2 protein Pcf11 [Cuculus canorus].
ACCESSION   XP_009563420
VERSION     XP_009563420.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565125.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009563420.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1709
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1709
                     /product="pre-mRNA cleavage complex 2 protein Pcf11"
                     /calculated_mol_wt=188216
     Region          19..145
                     /region_name="CID_Pcf11"
                     /note="CID (CTD-Interacting Domain) of Pcf11; cd16982"
                     /db_xref="CDD:340779"
     Site            order(34..35,37,75,78..79,82..83,114,118,121)
                     /site_type="other"
                     /note="CTD binding site [polypeptide binding]"
                     /db_xref="CDD:340779"
     Region          <143..336
                     /region_name="PRK12323"
                     /note="DNA polymerase III subunit gamma/tau; cl46901"
                     /db_xref="CDD:481241"
     Region          <319..>387
                     /region_name="PRK08581"
                     /note="amidase domain-containing protein"
                     /db_xref="CDD:236304"
     Region          <830..1061
                     /region_name="SPS1"
                     /note="Serine/threonine protein kinase [Signal
                     transduction mechanisms]; COG0515"
                     /db_xref="CDD:440281"
     Region          1018..>1409
                     /region_name="Med15"
                     /note="ARC105 or Med15 subunit of Mediator complex
                     non-fungal; pfam09606"
                     /db_xref="CDD:312941"
     CDS             1..1709
                     /gene="PCF11"
                     /coded_by="XM_009565125.2:227..5356"
                     /db_xref="GeneID:104062982"
ORIGIN      
        1 msapestagg ggearedacr dyqssledlt fnskphinml tilaeenvpf akdivsliea
       61 qiakapasek lpvmylmdsi vknvgreylt aftknlvatf icvfekvden trkslfklrs
      121 twddifplkk lyaldvrvns ldpawpikpl ppnvntssih vnpkflnksp eesaaptsav
      181 tsgastppav peiqknltqe qlirqqllak qkqllelqqk kleleleqtk aqlavslsvq
      241 qgsstiasvp apskqhvspa phvtvkpphq spvqserskp spspplhdlk vvnrdprlnr
      301 tgqqsshakd qshrkefppn ttsqsdtktn kttpsekqns tkpekskase ktqkkeldqs
      361 etkskspspl knkqpntkdt ktqesestkv seiskrdprl krhlqdkseg keeevkekrr
      421 ntekkekeeh ktcehrpags rnkvingavq kqeltteese kqggkqgrsr krsrsrspka
      481 rspsthspkr rerrspkrrl rslsptssap kigkirpigp kqshteegtp atrderssnk
      541 rnakqevrdp rrvkkvqedr pletasphst kaspdpkena enwqgsksgk rwksgweenk
      601 nsqqneehqa pgksphqrhr enwpagkgil sprapkqqhr lsvdanlqip keltsaskre
      661 llkkanerlt sgeitqdefl vvahqirqlf qyqegkhrcn vwdgpaeekc glkkkpllsd
      721 aeltyyehka klkrtqvqhs lsrldlldpd dildyqlpda llsgleceqa kakrgaqfdr
      781 kepfgerprr hspvsgtnra ftenlsples rrrleeptgt kgargsknfd pydnwgesee
      841 frdalrqqgk sttefqkidg davcrfdnre erpllgqagv reeprspfse rfkrtryedp
      901 dkaafpespg srfagveakk prisalmeer plfdgsprpa aarvgvdgpg spfvdgpaas
      961 sssridgppg qaamrfdgpl vaagasqfdg plagtggaaa lrfdgppgql agalrfegpp
     1021 gqvgaggplr fegplgqmgg plrfegpagq plggprfegp gvglrfegpr gqpsgglrfe
     1081 gphgqpmgpr gqpggglrfe gphgqplgph gqpggglrfe gphlqplgph gqpggglrfe
     1141 gphgqpmgph gpsggglrfe gphgpsgggl rlegphgqpg vgprlldgpv hqgagglrfd
     1201 gplgragsrf dgchgagfdg qpgqlsllqr fdgihgqpgp rferapgqqa qarfdtaipq
     1261 rfdgphqpas rfdlplglqg arfenvashp asrlemspyg qggpfvdhpg qgyngpshgm
     1321 qfqrpdlfdg shgpnfngpa gpgaqnfplr aaghyfdekg lqgpqygnfn nlpmgsnqvs
     1381 lmsaqpgpyg qgqqylpnpg gfvqnpagal phsypdnhlg qvdvnelfak llktgilkls
     1441 ktdstsaqvn easaqptaee edddqnedqn vpdltnfive elrqrydsvi nrlytgiqcy
     1501 scgmrfttsq tdvyadhldw hyrqnrtekd vsrkithrrw yysltdwief eeiadleera
     1561 ksqffekahe evvlktqeaa kekefqsvpa gpagavesce icqeqfeqyw deeeeewhlk
     1621 nairvdekiy hpscyedyqn tssfdctpsp sktpvenpln imlnivkqet qetcdlpkvk
     1681 eepddtpaac aeestvaste iktepeesv
//
LOCUS       XP_053918773            1192 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA helicase Mov10l1 [Cuculus canorus].
ACCESSION   XP_053918773
VERSION     XP_053918773.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062798.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1192
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1192
                     /product="RNA helicase Mov10l1"
                     /calculated_mol_wt=133653
     Region          750..978
                     /region_name="DEXXQc_Mov10L1"
                     /note="DEXXQ-box helicase domain of Mov10L1; cd18078"
                     /db_xref="CDD:350836"
     Site            order(754,778..783,923,977..978)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350836"
     Region          979..1169
                     /region_name="SF1_C_Upf1"
                     /note="C-terminal helicase domain of Upf1-like family
                     helicases; cd18808"
                     /db_xref="CDD:350195"
     Site            order(1073..1075,1097,1099..1100,1115)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:350195"
     Site            order(1103,1105,1143)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350195"
     CDS             1..1192
                     /gene="MOV10L1"
                     /coded_by="XM_054062798.1:41..3619"
                     /db_xref="GeneID:104055291"
ORIGIN      
        1 mfglfskvls yfwrrvddee geerwaasgd klktirgvvt rlchdygmid dmiiftrdav
       61 tkntlltvgq evtciveedk tsgglkairv davwntwges dstcgasein mktlignita
      121 lsenggyinr ntffamesvc egfkphegdw veakyfintt twnseavavk plrykrvdkv
      181 rissicgrig tvdesifftl dslmlpdgys prrhdlvnti vlessqscyi wralclvpvs
      241 qdglsqsnea sldetcedlm tdkgglevsr mtnfgtlkqr dskrmiiwie nkgsepqsli
      301 scrlagwvke kqfsfhipqk cedspetyis sfpinegsls kpeinsynes rgtasesleg
      361 ihsedtnlsk akesfslvkd eylhsgeneq rkdveqsikh fnvtgeivip pggkifivmi
      421 ctainpgysk ellllgfsdf tigryieatv tteeelliap vepfcprkpk ivpesqpskt
      481 tvvapppkrn nrrrllsflp pyvipyelrk cveqkldils fqpllaehln ldnykarfst
      541 llwledinae melkdfnmsg vtlqrdgnlf vlevpgveeg rphlvagdkv ilksqvyseh
      601 iveyvayite icnkdvtlkl negfeqgyns epmdvefvhs rttsrrcqla veqavylgek
      661 vlfperlvlq spqaiktqyt teccvvddgl eqcsqqeska kklqdkqaey mtsweeniag
      721 vmrvvaqtsq lvgesvtpkq rageffnpml neqqklavkr ilsgecrptp yvlfgppgtg
      781 ktltvietil qihytlpdsr ilvcapsnaa tdmiclqlhq snllkpgamv rvnascrsae
      841 liddmvepyc rdgedirkal wfrivittcs sagmfyrpev rlghfthvil deagqasepe
      901 slipiglise angqivlvgd pkqlgpviks eiavsfglnv sllerltsre mylrdenafs
      961 acgaynplli tklvknyrsh sallalpskl fyhkeleaca dpsvvtsllr wkklprkgfp
     1021 lifhgirgce kreghspswf npteavqvmq ycchlakndn aavsvtdigv iapyrkqvek
     1081 ikfllrsidl adikvgtvee fqgqeymvii lstvrsyesl fgddgyrlgf vsdpkrfnva
     1141 itrakalliv vgnphvlvkd pcfcallqys linkayvgcd lpseleclek cd
//
LOCUS       XP_053918782             679 aa            linear   VRT 09-MAR-2023
DEFINITION  pannexin-2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053918782
VERSION     XP_053918782.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062807.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..679
                     /product="pannexin-2 isoform X1"
                     /calculated_mol_wt=76467
     Region          58..>150
                     /region_name="Innexin"
                     /note="cl03000"
                     /db_xref="CDD:470716"
     CDS             1..679
                     /gene="PANX2"
                     /coded_by="XM_054062807.1:583..2622"
                     /db_xref="GeneID:104055292"
ORIGIN      
        1 mqhiidnhpd matallagek lkelilpgqq ddkagalaal llqlklelpf drvvtigtvl
       61 ipillvtlvf tknfaeepiy cytphnftrd qalyargycw telkdalpgv dashwpslfe
      121 hkflpyalla fagimyipal gweflastrl tselnfllqe idncyhraae grapkiekqi
      181 qskgpgiter ekreiienae kekspeqnlf ekylerrgrs nflaklylar hlfiiflsii
      241 pitylstyya tqkqneftca lgeppdktss sklhirvnck lpsvqlqrii agvdivllcf
      301 mnliilinli hlfifrksnf ifdklnkvgi ktkkqwqksq fcdinilamf cnenrdhiks
      361 lnrldfitne sdlmydnvvr qllaalaqsn hdatptmrds giqtidpsvd padidaneql
      421 iikrprkkik wipttnplpq pfkeqlaimk venhkpekpk pvrrktatds liapllesta
      481 ktsqqssahk tepntipats sekkhtrhfs ldvhpyilss kkskpeiqai psmptsksqe
      541 ggflnqeenv vvhvtsslkd tphpakeily ssetcrtvpa agafvtcnhn hiatttaats
      601 mtlnhvkpep tpalncnqah pllhintlye dheeevsnvi dngiqsptdt geilsiptpk
      661 qirlatfdep maivssvey
//
LOCUS       XP_053918790             620 aa            linear   VRT 09-MAR-2023
DEFINITION  pannexin-2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053918790
VERSION     XP_053918790.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062815.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..620
                     /product="pannexin-2 isoform X2"
                     /calculated_mol_wt=70211
     Region          18..>91
                     /region_name="Innexin"
                     /note="cl03000"
                     /db_xref="CDD:470716"
     CDS             1..620
                     /gene="PANX2"
                     /coded_by="XM_054062815.1:118..1980"
                     /db_xref="GeneID:104055292"
ORIGIN      
        1 mnvpssygah frkffkeepi ycytphnftr dqalyargyc wtelkdalpg vdashwpslf
       61 ehkflpyall afagimyipa lgweflastr ltselnfllq eidncyhraa egrapkiekq
      121 iqskgpgite rekreiiena ekekspeqnl fekylerrgr snflaklyla rhlfiiflsi
      181 ipitylstyy atqkqneftc algeppdkts ssklhirvnc klpsvqlqri iagvdivllc
      241 fmnliilinl ihlfifrksn fifdklnkvg iktkkqwqks qfcdinilam fcnenrdhik
      301 slnrldfitn esdlmydnvv rqllaalaqs nhdatptmrd sgiqtidpsv dpadidaneq
      361 liikrprkki kwipttnplp qpfkeqlaim kvenhkpekp kpvrrktatd sliapllest
      421 aktsqqssah ktepntipat ssekkhtrhf sldvhpyils skkskpeiqa ipsmptsksq
      481 eggflnqeen vvvhvtsslk dtphpakeil yssetcrtvp aagafvtcnh nhiatttaat
      541 smtlnhvkpe ptpalncnqa hpllhintly edheeevsnv idngiqsptd tgeilsiptp
      601 kqirlatfde pmaivssvey
//
LOCUS       XP_053918795             615 aa            linear   VRT 09-MAR-2023
DEFINITION  pannexin-2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053918795
VERSION     XP_053918795.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062820.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..615
                     /product="pannexin-2 isoform X3"
                     /calculated_mol_wt=69585
     Region          10..>86
                     /region_name="Innexin"
                     /note="cl03000"
                     /db_xref="CDD:470716"
     CDS             1..615
                     /gene="PANX2"
                     /coded_by="XM_054062820.1:158..2005"
                     /db_xref="GeneID:104055292"
ORIGIN      
        1 mhssdfslcy teepiycytp hnftrdqaly argycwtelk dalpgvdash wpslfehkfl
       61 pyallafagi myipalgwef lastrltsel nfllqeidnc yhraaegrap kiekqiqskg
      121 pgiterekre iienaekeks peqnlfekyl errgrsnfla klylarhlfi iflsiipity
      181 lstyyatqkq neftcalgep pdktsssklh irvncklpsv qlqriiagvd ivllcfmnli
      241 ilinlihlfi frksnfifdk lnkvgiktkk qwqksqfcdi nilamfcnen rdhikslnrl
      301 dfitnesdlm ydnvvrqlla alaqsnhdat ptmrdsgiqt idpsvdpadi daneqliikr
      361 prkkikwipt tnplpqpfke qlaimkvenh kpekpkpvrr ktatdsliap llestaktsq
      421 qssahktepn tipatssekk htrhfsldvh pyilsskksk peiqaipsmp tsksqeggfl
      481 nqeenvvvhv tsslkdtphp akeilysset crtvpaagaf vtcnhnhiat ttaatsmtln
      541 hvkpeptpal ncnqahpllh intlyedhee evsnvidngi qsptdtgeil siptpkqirl
      601 atfdepmaiv ssvey
//
LOCUS       XP_053918801             615 aa            linear   VRT 09-MAR-2023
DEFINITION  pannexin-2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053918801
VERSION     XP_053918801.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062826.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..615
                     /product="pannexin-2 isoform X3"
                     /calculated_mol_wt=69585
     Region          10..>86
                     /region_name="Innexin"
                     /note="cl03000"
                     /db_xref="CDD:470716"
     CDS             1..615
                     /gene="PANX2"
                     /coded_by="XM_054062826.1:35..1882"
                     /db_xref="GeneID:104055292"
ORIGIN      
        1 mhssdfslcy teepiycytp hnftrdqaly argycwtelk dalpgvdash wpslfehkfl
       61 pyallafagi myipalgwef lastrltsel nfllqeidnc yhraaegrap kiekqiqskg
      121 pgiterekre iienaekeks peqnlfekyl errgrsnfla klylarhlfi iflsiipity
      181 lstyyatqkq neftcalgep pdktsssklh irvncklpsv qlqriiagvd ivllcfmnli
      241 ilinlihlfi frksnfifdk lnkvgiktkk qwqksqfcdi nilamfcnen rdhikslnrl
      301 dfitnesdlm ydnvvrqlla alaqsnhdat ptmrdsgiqt idpsvdpadi daneqliikr
      361 prkkikwipt tnplpqpfke qlaimkvenh kpekpkpvrr ktatdsliap llestaktsq
      421 qssahktepn tipatssekk htrhfsldvh pyilsskksk peiqaipsmp tsksqeggfl
      481 nqeenvvvhv tsslkdtphp akeilysset crtvpaagaf vtcnhnhiat ttaatsmtln
      541 hvkpeptpal ncnqahpllh intlyedhee evsnvidngi qsptdtgeil siptpkqirl
      601 atfdepmaiv ssvey
//
LOCUS       XP_053918804             569 aa            linear   VRT 09-MAR-2023
DEFINITION  pannexin-2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053918804
VERSION     XP_053918804.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062829.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..569
                     /product="pannexin-2 isoform X4"
                     /calculated_mol_wt=64500
     Region          58..>150
                     /region_name="Innexin"
                     /note="cl03000"
                     /db_xref="CDD:470716"
     CDS             1..569
                     /gene="PANX2"
                     /coded_by="XM_054062829.1:588..2297"
                     /db_xref="GeneID:104055292"
ORIGIN      
        1 mqhiidnhpd matallagek lkelilpgqq ddkagalaal llqlklelpf drvvtigtvl
       61 ipillvtlvf tknfaeepiy cytphnftrd qalyargycw telkdalpgv dashwpslfe
      121 hkflpyalla fagimyipal gweflastrl tselnfllqe idncyhraae grapkiekqi
      181 qskgpgiter ekreiienae kekspeqnlf ekylerrgrs nflaklylar hlfiiflsii
      241 pitylstyya tqkqneftca lgeppdktss sklhirvnck lpsvqlqrii agvdivllcf
      301 mnliilinli hlfifrksnf ifdklnkvgi ktkkqwqksq fcdinilamf cnenrdhiks
      361 lnrldfitne sdlmydnvvr qllaalaqsn hdatptmrds giqtidpsvd padidaneql
      421 iikrprkkik wipttnplpq pfkeqlaimk venhkpekpk pvrrktatds liapllesta
      481 ktsqqssahk tepntipats sekkhtrhfs ldvhpyilss kkskpeiqai psmptsksqe
      541 ggflnqeenv vvhvtsslka ktslwastd
//
LOCUS       XP_053918810             565 aa            linear   VRT 09-MAR-2023
DEFINITION  pannexin-2 isoform X5 [Cuculus canorus].
ACCESSION   XP_053918810
VERSION     XP_053918810.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062835.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..565
                     /product="pannexin-2 isoform X5"
                     /calculated_mol_wt=63371
     CDS             1..565
                     /gene="PANX2"
                     /coded_by="XM_054062835.1:674..2371"
                     /db_xref="GeneID:104055292"
ORIGIN      
        1 mtrrarwrrc ssssswscps tawspsapss spsssspsss prtspeidnc yhraaegrap
       61 kiekqiqskg pgiterekre iienaekeks peqnlfekyl errgrsnfla klylarhlfi
      121 iflsiipity lstyyatqkq neftcalgep pdktsssklh irvncklpsv qlqriiagvd
      181 ivllcfmnli ilinlihlfi frksnfifdk lnkvgiktkk qwqksqfcdi nilamfcnen
      241 rdhikslnrl dfitnesdlm ydnvvrqlla alaqsnhdat ptmrdsgiqt idpsvdpadi
      301 daneqliikr prkkikwipt tnplpqpfke qlaimkvenh kpekpkpvrr ktatdsliap
      361 llestaktsq qssahktepn tipatssekk htrhfsldvh pyilsskksk peiqaipsmp
      421 tsksqeggfl nqeenvvvhv tsslkdtphp akeilysset crtvpaagaf vtcnhnhiat
      481 ttaatsmtln hvkpeptpal ncnqahpllh intlyedhee evsnvidngi qsptdtgeil
      541 siptpkqirl atfdepmaiv ssvey
//
LOCUS       XP_053918833             518 aa            linear   VRT 09-MAR-2023
DEFINITION  Na(+)/H(+) exchange regulatory cofactor NHE-RF3 [Cuculus canorus].
ACCESSION   XP_053918833
VERSION     XP_053918833.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062858.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..518
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..518
                     /product="Na(+)/H(+) exchange regulatory cofactor NHE-RF3"
                     /calculated_mol_wt=57208
     Region          8..88
                     /region_name="PDZ_NHERF-like"
                     /note="PDZ domains of the Na+/H+ exchange regulatory
                     cofactor (NHERF) family (NHERF1-4), and related domains;
                     cd06768"
                     /db_xref="CDD:467249"
     Site            order(19..25,36,39,68,72,75..76)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467249"
     Region          135..212
                     /region_name="PDZ_NHERF-like"
                     /note="PDZ domains of the Na+/H+ exchange regulatory
                     cofactor (NHERF) family (NHERF1-4), and related domains;
                     cd06768"
                     /db_xref="CDD:467249"
     Site            order(145..151,162,165,194,198,201..202)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467249"
     Region          243..322
                     /region_name="PDZ_NHERF-like"
                     /note="PDZ domains of the Na+/H+ exchange regulatory
                     cofactor (NHERF) family (NHERF1-4), and related domains;
                     cd06768"
                     /db_xref="CDD:467249"
     Site            order(253..259,270,273,302,306,309..310)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467249"
     Region          367..446
                     /region_name="PDZ_NHERF-like"
                     /note="PDZ domains of the Na+/H+ exchange regulatory
                     cofactor (NHERF) family (NHERF1-4), and related domains;
                     cd06768"
                     /db_xref="CDD:467249"
     Site            order(377..383,394,397,426,430,433..434)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467249"
     CDS             1..518
                     /gene="PDZK1"
                     /coded_by="XM_054062858.1:155..1711"
                     /db_xref="GeneID:104055991"
ORIGIN      
        1 mssllqprec kvtktpqksy gfylrvekdt aghvirnvek nspaenaglk dgdrvlrvng
       61 vfvdkeehaq vvelvknsgn svvflvldda syqkaekegv sleelgqkvs tgqpeeqqsp
      121 ppmvngaita vpqprlcylv keekgygfsl kttegqkglf ivelssqgaa akagvqnndr
      181 lieingknve ndthqevvek vkksgnhvmf llsnedtdry ytsqkmvlrk esanlsllpl
      241 kprlleiqkg engygfylrm eqnsgdhvik dvdsqspaak aglkdndilv avngeqvdgl
      301 dheslvgkik qseakitllv vdketdtmyk lgqispysyy kaqdpvpaki eervelhteh
      361 kmnhkprick mvkgpsgygf slnmiknkpe lfisevqnhg padtagvknn dflvevngvn
      421 vmnesydkvv ariqdsgdrl tllvcskday qyfhsqnipi tasmadpvhd tpeppayten
      481 hqsepeknsl eprerasssc ssqsaastra dsdddtkl
//
LOCUS       XP_053918843             455 aa            linear   VRT 09-MAR-2023
DEFINITION  Golgi pH regulator B [Cuculus canorus].
ACCESSION   XP_053918843
VERSION     XP_053918843.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062868.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..455
                     /product="Golgi pH regulator B"
                     /calculated_mol_wt=52684
     Region          140..207
                     /region_name="GPHR_N"
                     /note="The Golgi pH Regulator (GPHR) Family N-terminal;
                     pfam12537"
                     /db_xref="CDD:463623"
     Region          276..446
                     /region_name="ABA_GPCR"
                     /note="Abscisic acid G-protein coupled receptor;
                     pfam12430"
                     /db_xref="CDD:463577"
     CDS             1..455
                     /gene="GPR89B"
                     /coded_by="XM_054062868.1:90..1457"
                     /db_xref="GeneID:104055990"
ORIGIN      
        1 msffidsgim vtsqvlffgf gwlffmrklf kdyevrqyvv qvifsvtfaf sctmfeliif
       61 eilgvlnsss ryfhwklnlf villilvfmv pfyigyfvvs nirllhrrkl lfacvlwltf
      121 myffwklgdp fpilspkhgi lsieqlisrv gvigvtlmal lsgfgavncp ytymsyflrn
      181 vtdadilale rrllqtmdmi vskkkriava hrtmfqrgev hnkptgfwgm iksvttsvag
      241 senlsliqqe vdaleelsrq lfletadlha tkerieyskt fqgkyfnflg yffsiycvwk
      301 ifmatinivf drvgktdpvt rgieitvnyl giqfdvkfws qhisfilvgi iivtsirgll
      361 itltkffyai ssskssnviv lllaqimgmy fvssvllirm smpleyrtii tevlgelqfn
      421 fyhrwfdvif lvsalssilf lylahkqape khmal
//
LOCUS       XP_053918856             366 aa            linear   VRT 09-MAR-2023
DEFINITION  5-hydroxytryptamine receptor 1F [Cuculus canorus].
ACCESSION   XP_053918856
VERSION     XP_053918856.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062881.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..366
                     /product="5-hydroxytryptamine receptor 1F"
                     /calculated_mol_wt=41561
     Region          24..357
                     /region_name="7tmA_5-HT1F"
                     /note="serotonin receptor subtype 1F, member of the class
                     A family of seven-transmembrane G protein-coupled
                     receptors; cd15334"
                     /db_xref="CDD:320456"
     Region          25..51
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320456"
     Region          58..84
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320456"
     Region          96..126
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320456"
     Site            order(99..100,103..104,107..108,172,185,189,304,307..308,
                     314,324,327..328,331,335)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:320456"
     Region          138..160
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320456"
     Region          178..207
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320456"
     Region          284..314
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320456"
     Region          324..349
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320456"
     CDS             1..366
                     /gene="HTR1F"
                     /coded_by="XM_054062881.1:428..1528"
                     /db_xref="GeneID:104055992"
ORIGIN      
        1 mdlinsteln gtseelfewa tskilisitl svlalmttai nslvmtaiiv trklhhpany
       61 licslavtdf lvavlvmpfs ivyivketwi mgqvvcdiwl svditcctcs ilhlsaiald
      121 ryraitdave yarkrtpkha gimiavvwii sifismpplf wrhqttsrdd eciikhdhiv
      181 ftiystfgaf yiplalilil yykiykaakt fhrrsvsriv reevngqvll dagerstksg
      241 smpstaekts dplvdcdkin ntirsprses khdkswkkqr isstrerkaa ttlglilgaf
      301 vicwlpffvk evvvntcerc hisedmsnfl awlgyinsli npliytifne dfkkafqklv
      361 qcrqyl
//
LOCUS       XP_053918865             366 aa            linear   VRT 09-MAR-2023
DEFINITION  5-hydroxytryptamine receptor 1F [Cuculus canorus].
ACCESSION   XP_053918865
VERSION     XP_053918865.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062890.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..366
                     /product="5-hydroxytryptamine receptor 1F"
                     /calculated_mol_wt=41561
     Region          24..357
                     /region_name="7tmA_5-HT1F"
                     /note="serotonin receptor subtype 1F, member of the class
                     A family of seven-transmembrane G protein-coupled
                     receptors; cd15334"
                     /db_xref="CDD:320456"
     Region          25..51
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320456"
     Region          58..84
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320456"
     Region          96..126
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320456"
     Site            order(99..100,103..104,107..108,172,185,189,304,307..308,
                     314,324,327..328,331,335)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:320456"
     Region          138..160
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320456"
     Region          178..207
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320456"
     Region          284..314
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320456"
     Region          324..349
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320456"
     CDS             1..366
                     /gene="HTR1F"
                     /coded_by="XM_054062890.1:524..1624"
                     /db_xref="GeneID:104055992"
ORIGIN      
        1 mdlinsteln gtseelfewa tskilisitl svlalmttai nslvmtaiiv trklhhpany
       61 licslavtdf lvavlvmpfs ivyivketwi mgqvvcdiwl svditcctcs ilhlsaiald
      121 ryraitdave yarkrtpkha gimiavvwii sifismpplf wrhqttsrdd eciikhdhiv
      181 ftiystfgaf yiplalilil yykiykaakt fhrrsvsriv reevngqvll dagerstksg
      241 smpstaekts dplvdcdkin ntirsprses khdkswkkqr isstrerkaa ttlglilgaf
      301 vicwlpffvk evvvntcerc hisedmsnfl awlgyinsli npliytifne dfkkafqklv
      361 qcrqyl
//
LOCUS       XP_053918870             366 aa            linear   VRT 09-MAR-2023
DEFINITION  5-hydroxytryptamine receptor 1F [Cuculus canorus].
ACCESSION   XP_053918870
VERSION     XP_053918870.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062895.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..366
                     /product="5-hydroxytryptamine receptor 1F"
                     /calculated_mol_wt=41561
     Region          24..357
                     /region_name="7tmA_5-HT1F"
                     /note="serotonin receptor subtype 1F, member of the class
                     A family of seven-transmembrane G protein-coupled
                     receptors; cd15334"
                     /db_xref="CDD:320456"
     Region          25..51
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320456"
     Region          58..84
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320456"
     Region          96..126
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320456"
     Site            order(99..100,103..104,107..108,172,185,189,304,307..308,
                     314,324,327..328,331,335)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:320456"
     Region          138..160
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320456"
     Region          178..207
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320456"
     Region          284..314
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320456"
     Region          324..349
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320456"
     CDS             1..366
                     /gene="HTR1F"
                     /coded_by="XM_054062895.1:540..1640"
                     /db_xref="GeneID:104055992"
ORIGIN      
        1 mdlinsteln gtseelfewa tskilisitl svlalmttai nslvmtaiiv trklhhpany
       61 licslavtdf lvavlvmpfs ivyivketwi mgqvvcdiwl svditcctcs ilhlsaiald
      121 ryraitdave yarkrtpkha gimiavvwii sifismpplf wrhqttsrdd eciikhdhiv
      181 ftiystfgaf yiplalilil yykiykaakt fhrrsvsriv reevngqvll dagerstksg
      241 smpstaekts dplvdcdkin ntirsprses khdkswkkqr isstrerkaa ttlglilgaf
      301 vicwlpffvk evvvntcerc hisedmsnfl awlgyinsli npliytifne dfkkafqklv
      361 qcrqyl
//
LOCUS       XP_053918902             397 aa            linear   VRT 09-MAR-2023
DEFINITION  Krueppel-like factor 12 isoform X1 [Cuculus canorus].
ACCESSION   XP_053918902
VERSION     XP_053918902.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062927.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..397
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..397
                     /product="Krueppel-like factor 12 isoform X1"
                     /calculated_mol_wt=43556
     Region          23..220
                     /region_name="KLF12_N"
                     /note="N-terminal domain of Kruppel-like factor 12;
                     cd21441"
                     /db_xref="CDD:410608"
     Region          <224..396
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          314..336
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(321,323,325,327..328,331..332,335,351,353,357..358,
                     361..362,365,379,381,383,385..386,389..390,393)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          344..366
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          358..383
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          374..394
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..397
                     /gene="KLF12"
                     /coded_by="XM_054062927.1:176..1369"
                     /db_xref="GeneID:104054965"
ORIGIN      
        1 mkrkaikdis afenrmlmld gmpavrvkte lleseqgqsp nvhnypdmea vplllnnmka
       61 dpvedslstd hfqtqtepvd lsinkarssp taassspvsm tasasspsst stsssssrpa
      121 ssptvitsvs saasvpsvlt pgplvasasg vggqqflhii hpvppsspmn lqsnkmshvh
      181 ripvvvqsvp vvytavrspg nmnntivvpl ledgrshvka qmdprglspr qiksdsdddd
      241 lpnvtldsvn etgstalsia ravqeesmwg carsavnpfr ffnsssispf siestrrqrr
      301 sespdsrkrr ihrcdfegcn kvytksshlk ahrrthtgek pykctwegct wkfarsdelt
      361 rhyrkhtgvk pfkcadcdrs fsrsdhlalh rrrhmlv
//
LOCUS       XP_053918907             397 aa            linear   VRT 09-MAR-2023
DEFINITION  Krueppel-like factor 12 isoform X1 [Cuculus canorus].
ACCESSION   XP_053918907
VERSION     XP_053918907.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062932.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..397
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..397
                     /product="Krueppel-like factor 12 isoform X1"
                     /calculated_mol_wt=43556
     Region          23..220
                     /region_name="KLF12_N"
                     /note="N-terminal domain of Kruppel-like factor 12;
                     cd21441"
                     /db_xref="CDD:410608"
     Region          <224..396
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          314..336
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(321,323,325,327..328,331..332,335,351,353,357..358,
                     361..362,365,379,381,383,385..386,389..390,393)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          344..366
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          358..383
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          374..394
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..397
                     /gene="KLF12"
                     /coded_by="XM_054062932.1:183..1376"
                     /db_xref="GeneID:104054965"
ORIGIN      
        1 mkrkaikdis afenrmlmld gmpavrvkte lleseqgqsp nvhnypdmea vplllnnmka
       61 dpvedslstd hfqtqtepvd lsinkarssp taassspvsm tasasspsst stsssssrpa
      121 ssptvitsvs saasvpsvlt pgplvasasg vggqqflhii hpvppsspmn lqsnkmshvh
      181 ripvvvqsvp vvytavrspg nmnntivvpl ledgrshvka qmdprglspr qiksdsdddd
      241 lpnvtldsvn etgstalsia ravqeesmwg carsavnpfr ffnsssispf siestrrqrr
      301 sespdsrkrr ihrcdfegcn kvytksshlk ahrrthtgek pykctwegct wkfarsdelt
      361 rhyrkhtgvk pfkcadcdrs fsrsdhlalh rrrhmlv
//
LOCUS       XP_053918916             396 aa            linear   VRT 09-MAR-2023
DEFINITION  Krueppel-like factor 12 isoform X2 [Cuculus canorus].
ACCESSION   XP_053918916
VERSION     XP_053918916.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062941.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..396
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..396
                     /product="Krueppel-like factor 12 isoform X2"
                     /calculated_mol_wt=43428
     Region          23..219
                     /region_name="KLF12_N"
                     /note="N-terminal domain of Kruppel-like factor 12;
                     cd21441"
                     /db_xref="CDD:410608"
     Region          <223..395
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          313..335
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(320,322,324,326..327,330..331,334,350,352,356..357,
                     360..361,364,378,380,382,384..385,388..389,392)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          343..365
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          357..382
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          373..393
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..396
                     /gene="KLF12"
                     /coded_by="XM_054062941.1:176..1366"
                     /db_xref="GeneID:104054965"
ORIGIN      
        1 mkrkaikdis afenrmlmld gmpavrvkte lleseqgspn vhnypdmeav plllnnmkad
       61 pvedslstdh fqtqtepvdl sinkarsspt aassspvsmt asasspssts tsssssrpas
      121 sptvitsvss aasvpsvltp gplvasasgv ggqqflhiih pvppsspmnl qsnkmshvhr
      181 ipvvvqsvpv vytavrspgn mnntivvpll edgrshvkaq mdprglsprq iksdsddddl
      241 pnvtldsvne tgstalsiar avqeesmwgc arsavnpfrf fnsssispfs iestrrqrrs
      301 espdsrkrri hrcdfegcnk vytksshlka hrrthtgekp ykctwegctw kfarsdeltr
      361 hyrkhtgvkp fkcadcdrsf srsdhlalhr rrhmlv
//
LOCUS       XP_053918923             377 aa            linear   VRT 09-MAR-2023
DEFINITION  Krueppel-like factor 12 isoform X3 [Cuculus canorus].
ACCESSION   XP_053918923
VERSION     XP_053918923.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062948.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..377
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..377
                     /product="Krueppel-like factor 12 isoform X3"
                     /calculated_mol_wt=41267
     Region          23..220
                     /region_name="KLF12_N"
                     /note="N-terminal domain of Kruppel-like factor 12;
                     cd21441"
                     /db_xref="CDD:410608"
     Region          <233..371
                     /region_name="SFP1"
                     /note="Putative transcriptional repressor regulating G2/M
                     transition [Transcription / Cell division and chromosome
                     partitioning]; COG5189"
                     /db_xref="CDD:227516"
     Region          294..316
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(301,303,305,307..308,311..312,315,331,333,337..338,
                     341..342,345,359,361,363,365..366,369..370,373)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          324..346
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          338..363
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          354..374
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..377
                     /gene="KLF12"
                     /coded_by="XM_054062948.1:176..1309"
                     /db_xref="GeneID:104054965"
ORIGIN      
        1 mkrkaikdis afenrmlmld gmpavrvkte lleseqgqsp nvhnypdmea vplllnnmka
       61 dpvedslstd hfqtqtepvd lsinkarssp taassspvsm tasasspsst stsssssrpa
      121 ssptvitsvs saasvpsvlt pgplvasasg vggqqflhii hpvppsspmn lqsnkmshvh
      181 ripvvvqsvp vvytavrspg nmnntivvpl ledgrshvka qmdprglspr qiksdsdddd
      241 lpnvtldsvn etgstalsia ravqdsispf siestrrqrr sespdsrkrr ihrcdfegcn
      301 kvytksshlk ahrrthtgek pykctwegct wkfarsdelt rhyrkhtgvk pfkcadcdrs
      361 fsrsdhlalh rrrhmlv
//
LOCUS       XP_053918932             376 aa            linear   VRT 09-MAR-2023
DEFINITION  Krueppel-like factor 12 isoform X4 [Cuculus canorus].
ACCESSION   XP_053918932
VERSION     XP_053918932.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062957.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..376
                     /product="Krueppel-like factor 12 isoform X4"
                     /calculated_mol_wt=41139
     Region          23..219
                     /region_name="KLF12_N"
                     /note="N-terminal domain of Kruppel-like factor 12;
                     cd21441"
                     /db_xref="CDD:410608"
     Region          <232..370
                     /region_name="SFP1"
                     /note="Putative transcriptional repressor regulating G2/M
                     transition [Transcription / Cell division and chromosome
                     partitioning]; COG5189"
                     /db_xref="CDD:227516"
     Region          293..315
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(300,302,304,306..307,310..311,314,330,332,336..337,
                     340..341,344,358,360,362,364..365,368..369,372)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          323..345
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          337..362
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          353..373
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..376
                     /gene="KLF12"
                     /coded_by="XM_054062957.1:176..1306"
                     /db_xref="GeneID:104054965"
ORIGIN      
        1 mkrkaikdis afenrmlmld gmpavrvkte lleseqgspn vhnypdmeav plllnnmkad
       61 pvedslstdh fqtqtepvdl sinkarsspt aassspvsmt asasspssts tsssssrpas
      121 sptvitsvss aasvpsvltp gplvasasgv ggqqflhiih pvppsspmnl qsnkmshvhr
      181 ipvvvqsvpv vytavrspgn mnntivvpll edgrshvkaq mdprglsprq iksdsddddl
      241 pnvtldsvne tgstalsiar avqdsispfs iestrrqrrs espdsrkrri hrcdfegcnk
      301 vytksshlka hrrthtgekp ykctwegctw kfarsdeltr hyrkhtgvkp fkcadcdrsf
      361 srsdhlalhr rrhmlv
//
LOCUS       XP_053918937             367 aa            linear   VRT 09-MAR-2023
DEFINITION  Krueppel-like factor 12 isoform X5 [Cuculus canorus].
ACCESSION   XP_053918937
VERSION     XP_053918937.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062962.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..367
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..367
                     /product="Krueppel-like factor 12 isoform X5"
                     /calculated_mol_wt=39748
     Region          23..220
                     /region_name="KLF12_N"
                     /note="N-terminal domain of Kruppel-like factor 12;
                     cd21441"
                     /db_xref="CDD:410608"
     Region          312..336
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          314..336
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..367
                     /gene="KLF12"
                     /coded_by="XM_054062962.1:176..1279"
                     /db_xref="GeneID:104054965"
ORIGIN      
        1 mkrkaikdis afenrmlmld gmpavrvkte lleseqgqsp nvhnypdmea vplllnnmka
       61 dpvedslstd hfqtqtepvd lsinkarssp taassspvsm tasasspsst stsssssrpa
      121 ssptvitsvs saasvpsvlt pgplvasasg vggqqflhii hpvppsspmn lqsnkmshvh
      181 ripvvvqsvp vvytavrspg nmnntivvpl ledgrshvka qmdprglspr qiksdsdddd
      241 lpnvtldsvn etgstalsia ravqeesmwg carsavnpfr ffnsssispf siestrrqrr
      301 sespdsrkrr ihrcdfegcn kvytksshlk ahrrthtaqe qsqhkldsfq mklngkvasw
      361 dvptilq
//
LOCUS       XP_053918950             520 aa            linear   VRT 09-MAR-2023
DEFINITION  FMR1-interacting protein NUFIP1 [Cuculus canorus].
ACCESSION   XP_053918950
VERSION     XP_053918950.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062975.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..520
                     /product="FMR1-interacting protein NUFIP1"
                     /calculated_mol_wt=58501
     Region          94..117
                     /region_name="zf-C2H2_jaz"
                     /note="Zinc-finger double-stranded RNA-binding; pfam12171"
                     /db_xref="CDD:432381"
     Region          135..188
                     /region_name="NUFIP1"
                     /note="Nuclear fragile X mental retardation-interacting
                     protein 1 (NUFIP1); pfam10453"
                     /db_xref="CDD:463096"
     CDS             1..520
                     /gene="NUFIP1"
                     /coded_by="XM_054062975.1:114..1676"
                     /db_xref="GeneID:104056532"
ORIGIN      
        1 mnpfpwfppp ffcpppawep sfwpgpfppp escvppsawy ppaygeqppg prdggngsfs
       61 qnwqgkqvpg fskrfqdqnk kpktkkkkep vfshycdtcd rgfknqekyd ehisqhkqct
      121 eegcsfsahe kivqihwqna hapgakrirl espeeiarwr eerrknfptl anierkkamq
      181 mqkeergevl ttqqfgkmkg mwkppeneek lgqqgrqrrr qrrpfwkkfr knggnhnvhg
      241 trneangpen ttcekedenq hamaaqpyte dmdplsllan sdaesdkdee aakdgklglv
      301 vvpkmvtsal sslsanygsa sesepeeipv ktatkaektq aalgntpqtt cvpetqnanq
      361 kcpehagtal rssnsnarsh rgpdnrgkkt lpllpkrrpt llemllaqdi rhernvilqc
      421 vryliqnnvf glnlktepqa eteteqssip ttsvepltde ldesnhsras dlqlaggeee
      481 edvfliaqge kapvdqtsrm acladedtwe tpsilceeas
//
LOCUS       XP_053918957             383 aa            linear   VRT 09-MAR-2023
DEFINITION  GPALPP motifs-containing protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053918957
VERSION     XP_053918957.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062982.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..383
                     /product="GPALPP motifs-containing protein 1 isoform X1"
                     /calculated_mol_wt=43137
     Region          <66..>180
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     Region          239..374
                     /region_name="DUF3752"
                     /note="Protein of unknown function (DUF3752); pfam12572"
                     /db_xref="CDD:463632"
     CDS             1..383
                     /gene="GPALPP1"
                     /coded_by="XM_054062982.1:1146..2297"
                     /db_xref="GeneID:104056531"
ORIGIN      
        1 mqkagcvcfs ieasfvkyrt hqtaahfapf ipsplpyclh seqmklcfyg igipgswrkl
       61 lcrclvagpa lppgyksscs setpdsddds eplprdtnrd seeetegdps pkkqkriqed
      121 ddddgffgpa lppgfkkqdd sperpiigpa lppgfrkqdt gnsrcaigps vssechtqvt
      181 dsseeddnli gpmpakgpve sdvtkeferr aqrmkeklts adsdepkqvt reswmtelpp
      241 elksfgfgpr tfkrraddks gdrsvwtdtp adrerkaker eeakkssskd neeiglsgrd
      301 krlveqvtsy neskrseslm dihkrklksk aseekskpqe rrpfdrdqdl kvnrfdeaqk
      361 kalirksrdl nskfehskgn mfl
//
LOCUS       XP_053918963             346 aa            linear   VRT 09-MAR-2023
DEFINITION  GPALPP motifs-containing protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053918963
VERSION     XP_053918963.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062988.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..346
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..346
                     /product="GPALPP motifs-containing protein 1 isoform X2"
                     /calculated_mol_wt=38738
     Region          <9..>143
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     Region          202..337
                     /region_name="DUF3752"
                     /note="Protein of unknown function (DUF3752); pfam12572"
                     /db_xref="CDD:463632"
     CDS             1..346
                     /gene="GPALPP1"
                     /coded_by="XM_054062988.1:80..1120"
                     /db_xref="GeneID:104056531"
ORIGIN      
        1 mareligpal ppgfarraea dpdedcgqva gpalppgyks scssetpdsd ddseplprdt
       61 nrdseeeteg dpspkkqkri qedddddgff gpalppgfkk qddsperpii gpalppgfrk
      121 qdtgnsrcai gpsvssecht qvtdsseedd nligpmpakg pvesdvtkef erraqrmkek
      181 ltsadsdepk qvtreswmte lppelksfgf gprtfkrrad dksgdrsvwt dtpadrerka
      241 kereeakkss skdneeigls grdkrlveqv tsyneskrse slmdihkrkl kskaseeksk
      301 pqerrpfdrd qdlkvnrfde aqkkalirks rdlnskfehs kgnmfl
//
LOCUS       XP_053918973             624 aa            linear   VRT 09-MAR-2023
DEFINITION  basic helix-loop-helix ARNT-like protein 2 [Cuculus canorus].
ACCESSION   XP_053918973
VERSION     XP_053918973.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054062998.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..624
                     /product="basic helix-loop-helix ARNT-like protein 2"
                     /calculated_mol_wt=69063
     Region          94..153
                     /region_name="bHLH-PAS_ARNTL2_PASD9"
                     /note="basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS)
                     domain found in aryl hydrocarbon receptor nuclear
                     translocator-like protein 2 (ARNTL2) and similar proteins;
                     cd11469"
                     /db_xref="CDD:381475"
     Site            order(94..95,98..99,102,105..106,110,131..132)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381475"
     Site            order(109,112,115..116,133,136..137,140,142..144,146)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381475"
     Region          167..229
                     /region_name="PAS"
                     /note="PAS domain; smart00091"
                     /db_xref="CDD:214512"
     Site            order(193,197,203,216..219,241,246)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:238075"
     Site            order(213,217,225,228..229,253,255)
                     /site_type="other"
                     /note="heme pocket [chemical binding]"
                     /db_xref="CDD:238075"
     Region          356..463
                     /region_name="PAS_11"
                     /note="PAS domain; pfam14598"
                     /db_xref="CDD:464214"
     CDS             1..624
                     /gene="BMAL2"
                     /coded_by="XM_054062998.1:113..1987"
                     /db_xref="GeneID:104067194"
ORIGIN      
        1 maeaaagsae gaeeerrgae dnfsidgnsc iasgvpslmn pvtkpattts fntsvaeipr
       61 krkgsdsdnq dtvevdgdpq krsedeehvk ikdfreahsq tekrrrdkmn nlieelsami
      121 pqcnpmarkl dkltvlrmav qhlkslkgst ssysevrykp aflkddelrq lilraadgfl
      181 fvvgcnrgri lfvsesvcki lnydqaslig qsffdylhpk dvakvkeqls ssdvsprekl
      241 idgktglqvh tdfqagparl nsgarrsffc rikcsrttvk eekeclpnpk kkdhrkycti
      301 hctgymknwp pnevgveeen dvekdssnfn clvaigrlhp yivpqksgei kvkatefvtr
      361 famdgkfvyv dqratailgy lpqellgtsc yeychqddhn hlaekhkevl qnkekvltns
      421 ykfrakdgtf vtlksqwfsf mnpwtkeley ivsnntvvlg hnesageqvp ygsqpaedav
      481 kqslvsvpgm ssgtvlgags igteianeil elqrlhssps gelspshllr kspspaltln
      541 csnvpnkelv qlcpsetdil etseqnqgav pfpnneplls gnsqldfdai cenddtamta
      601 lmnyleadgg lgdpaelgdi pwal
//
LOCUS       XP_053918984             610 aa            linear   VRT 09-MAR-2023
DEFINITION  GRAM domain-containing protein 4 isoform X1 [Cuculus canorus].
ACCESSION   XP_053918984
VERSION     XP_053918984.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063009.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..610
                     /product="GRAM domain-containing protein 4 isoform X1"
                     /calculated_mol_wt=69837
     Region          122..>178
                     /region_name="tolA"
                     /note="cell envelope integrity inner membrane protein
                     TolA; Provisional; PRK09510"
                     /db_xref="CDD:236545"
     Region          493..598
                     /region_name="PH-GRAM_GRAMDC4"
                     /note="GRAM domain-containing protein 4 (GRAMDC4)
                     Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase
                     activators and Myotubularins (PH-GRAM) domain; cd13221"
                     /db_xref="CDD:270041"
     CDS             1..610
                     /gene="GRAMD4"
                     /coded_by="XM_054063009.1:112..1944"
                     /db_xref="GeneID:104056057"
ORIGIN      
        1 mrvcsdlrvg dsnrhvkvkq ksavlnmlkk ldkirfrghk rdefldlaes pnasdtecgd
       61 eipvkiprts areneelrdp agpgtiimas gvqdfnrtes drlneikghl eiallekhfl
      121 qeelrklree tnaetlrqel ekerqrrlel eqkvnevlka raeevpaaqq pakpqtqang
      181 tdkrsntvcs rlqkwfcdkf geyvedfrfq peentvetee plsarrlten mrrlkrgakp
      241 vtnfvknlsa lsdwysiyts aiafiiymna vwhgwaipmf lflailrlsl nyliargwri
      301 qwsivpevse pmeppkedlt vsekfqlvld vaqkaqnlfg kmadilekik nlfmwvqpei
      361 tqklyitlwa afiascflpy riiglamgly agikfflidf ifkrcprlra kydtpyiiwt
      421 slptdpqlke rsnatvsrrl sgheklqtaa srsyvgsstp tgvskdedts rfhttkrgnf
      481 hevfnlsete rplavcengw rcclinrdrk mptdyirngv lyvtenylcf essksgsskr
      541 nkvikltdit diqkykvlsv lpgsgmgiav stpstqkplv fgamvhrdea fetifnqyvk
      601 itsasssses
//
LOCUS       XP_053918991             604 aa            linear   VRT 09-MAR-2023
DEFINITION  GRAM domain-containing protein 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053918991
VERSION     XP_053918991.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063016.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..604
                     /product="GRAM domain-containing protein 4 isoform X2"
                     /calculated_mol_wt=69186
     Region          122..>178
                     /region_name="tolA"
                     /note="cell envelope integrity inner membrane protein
                     TolA; Provisional; PRK09510"
                     /db_xref="CDD:236545"
     Region          487..592
                     /region_name="PH-GRAM_GRAMDC4"
                     /note="GRAM domain-containing protein 4 (GRAMDC4)
                     Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase
                     activators and Myotubularins (PH-GRAM) domain; cd13221"
                     /db_xref="CDD:270041"
     CDS             1..604
                     /gene="GRAMD4"
                     /coded_by="XM_054063016.1:112..1926"
                     /db_xref="GeneID:104056057"
ORIGIN      
        1 mrvcsdlrvg dsnrhvkvkq ksavlnmlkk ldkirfrghk rdefldlaes pnasdtecgd
       61 eipvkiprts areneelrdp agpgtiimas gvqdfnrtes drlneikghl eiallekhfl
      121 qeelrklree tnaetlrqel ekerqrrlel eqkvnevlka raeevpaaqq pakpqtqang
      181 tdkrsntvcs rlqkwfcdkf geyvedfrfq peentvetee plsarrlten mrrlkrgakp
      241 vtnfvknlsa lsdwysiyts aiafiiymna vwhgwaipmf lflailrlsl nyliargwri
      301 qwsivpevse pmeppkedlt vsekfqlvld vaqkaqnlfg kmadilekik nlfmwvqpei
      361 tqklyitlwa afiascflpy riiglamgly agikfflidf ifkrcprlra kydtpyiiwt
      421 slptdpqlke rsnatvsrrl qtaasrsyvg sstptgvskd edtsrfhttk rgnfhevfnl
      481 seterplavc engwrcclin rdrkmptdyi rngvlyvten ylcfessksg sskrnkvikl
      541 tditdiqkyk vlsvlpgsgm giavstpstq kplvfgamvh rdeafetifn qyvkitsass
      601 sses
//
LOCUS       XP_053919005             247 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H2B 5 isoform X1 [Cuculus canorus].
ACCESSION   XP_053919005
VERSION     XP_053919005.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063030.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..247
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..247
                     /product="histone H2B 5 isoform X1"
                     /calculated_mol_wt=26451
     Region          151..244
                     /region_name="HFD_H2B"
                     /note="histone-fold domain found in histone H2B and
                     similar proteins; cd22910"
                     /db_xref="CDD:467035"
     Site            order(152,154,157,159,161..163,165..167,170..177,179..180,
                     183..184,187..188,190..192,194..196,200,210..211,213,
                     216..217,220,223..225,228,231..233,235..236,239..240,
                     243..244)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467035"
     Site            order(152..158,161..162,164,175..177,210)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:467035"
     Site            order(156,160..162,164..165,168..170,175..177,181,217,221,
                     230..231,233..234,237..238,240..241,244)
                     /site_type="other"
                     /note="Hif1 binding site [polypeptide binding]"
                     /db_xref="CDD:467035"
     Site            order(183,186..187,189..190,193,198,201,204..206,214..215,
                     218,222..223)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:467035"
     CDS             1..247
                     /gene="LOC104056058"
                     /coded_by="XM_054063030.1:1..744"
                     /db_xref="GeneID:104056058"
ORIGIN      
        1 mppepgdalr aaprplspgq saageggsrc pflrrgraer paqpppqrap appprprgga
       61 paeagaargr gggaerarsp agsrgacrlr aerprrapap rspaeeprrl aasrlreral
      121 rmpepaksts apkkgskkav tktqkkgdkk rhksrkesys iyvykvlkqv hpdtgisska
      181 mgimnsfvnd iferiageas rlahynkrst itsreiqtav rlllpgelak havsegtkav
      241 tkytssk
//
LOCUS       XP_053919012             126 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H2B 5 isoform X2 [Cuculus canorus].
ACCESSION   XP_053919012
VERSION     XP_053919012.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063037.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..126
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..126
                     /product="histone H2B 5 isoform X2"
                     /calculated_mol_wt=13820
     Region          30..123
                     /region_name="HFD_H2B"
                     /note="histone-fold domain found in histone H2B and
                     similar proteins; cd22910"
                     /db_xref="CDD:467035"
     Site            order(31,33,36,38,40..42,44..46,49..56,58..59,62..63,
                     66..67,69..71,73..75,79,89..90,92,95..96,99,102..104,107,
                     110..112,114..115,118..119,122..123)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467035"
     Site            order(31..37,40..41,43,54..56,89)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:467035"
     Site            order(35,39..41,43..44,47..49,54..56,60,96,100,109..110,
                     112..113,116..117,119..120,123)
                     /site_type="other"
                     /note="Hif1 binding site [polypeptide binding]"
                     /db_xref="CDD:467035"
     Site            order(62,65..66,68..69,72,77,80,83..85,93..94,97,101..102)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:467035"
     CDS             1..126
                     /gene="LOC104056058"
                     /coded_by="XM_054063037.1:169..549"
                     /db_xref="GeneID:104056058"
ORIGIN      
        1 mpepakstsa pkkgskkavt ktqkkgdkkr hksrkesysi yvykvlkqvh pdtgisskam
       61 gimnsfvndi feriageasr lahynkrsti tsreiqtavr lllpgelakh avsegtkavt
      121 kytssk
//
LOCUS       XP_053919028            1003 aa            linear   VRT 09-MAR-2023
DEFINITION  endosome/lysosome-associated apoptosis and autophagy regulator
            family member 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053919028
VERSION     XP_053919028.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063053.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1003
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1003
                     /product="endosome/lysosome-associated apoptosis and
                     autophagy regulator family member 2 isoform X1"
                     /calculated_mol_wt=110354
     Region          375..>406
                     /region_name="Ephrin_rec_like"
                     /note="Tyrosine-protein kinase ephrin type A/B
                     receptor-like; pfam07699"
                     /db_xref="CDD:429604"
     CDS             1..1003
                     /gene="ELAPOR2"
                     /coded_by="XM_054063053.1:200..3211"
                     /db_xref="GeneID:104066147"
ORIGIN      
        1 mgmrragaer gypgsawlcc wllgwqaaal qlppcqetdy hfeytecdss gsrwrvavpn
       61 psvecsglpd pvkgkectfs casgeylemk nqvcskcaeg tyslgsgikf dewdelpagf
      121 snvatfmdta vgsaenkads cnnsswtprg nyiesnrddc tvsliyavhl kksgfvffey
      181 qyidnniffe ffiqndqcke mestadkwvk ltdngewgsh svtlksgsni lywrttgilm
      241 gskvvkpvlv knitiegvay tsecfpckpg tfsdkpgssg cqvcprntys ekgakectkc
      301 keemyyadeg ssaciqrppc tnkdffqiht pcdkegktqi mykwiepkic redlpdaltl
      361 ppsgerkdcp pcnpgfysna ssscspcppg tfsdgtqeck acpagtepal gfeykwwnil
      421 psnmktscfn vgnskcdgmn gwevagdhiq sgaggsdndy lilnlhipgf kpptsvtgat
      481 gselgritfv feticsadcv lyfmadvnrk stnvveswer skekqsythi isknasftft
      541 wafqrinegq dsrqfindma kiysisvtna vdgvasscqa calgseqsgs scvpcpaghy
      601 ieketnqcke cpantflsvh qvygreacip cgpgskstkd hsacfsdclv syirdnqsvn
      661 ydfsnlsqvg slmsgpsfts rgtkffhffn islcgnegkk mavctdnitd vtlkdmvaes
      721 edfsnfvgaf vcqstiipsd skgfrtalal qsnsladrfl gatvettlen isintdifpp
      781 spskipdvhf fyksstvtts cengratvvt mrcnpnkpdq gelsvpslcp agtcdgctfy
      841 fvwesaeacp lcmeqdyhei egackkgfqe tlyvwnepky cikgvplpek rtstcetvdf
      901 wlkvgagvga ftavllialt cyfwkknqkl eykysklvmt anskecelpa adscaimege
      961 dneeeivysn kqsllgklks latkekednf esvqlkssrs qni
//
LOCUS       XP_053919033             915 aa            linear   VRT 09-MAR-2023
DEFINITION  endosome/lysosome-associated apoptosis and autophagy regulator
            family member 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053919033
VERSION     XP_053919033.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063058.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..915
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..915
                     /product="endosome/lysosome-associated apoptosis and
                     autophagy regulator family member 2 isoform X2"
                     /calculated_mol_wt=100676
     Region          287..>318
                     /region_name="Ephrin_rec_like"
                     /note="Tyrosine-protein kinase ephrin type A/B
                     receptor-like; pfam07699"
                     /db_xref="CDD:429604"
     CDS             1..915
                     /gene="ELAPOR2"
                     /coded_by="XM_054063058.1:285..3032"
                     /db_xref="GeneID:104066147"
ORIGIN      
        1 mknqvcskca egtyslgsgi kfdewdelpa gfsnvatfmd tavgsaenka dscnnsswtp
       61 rgnyiesnrd dctvsliyav hlkksgfvff eyqyidnnif feffiqndqc kemestadkw
      121 vkltdngewg shsvtlksgs nilywrttgi lmgskvvkpv lvknitiegv aytsecfpck
      181 pgtfsdkpgs sgcqvcprnt ysekgakect kckeemyyad egssaciqrp pctnkdffqi
      241 htpcdkegkt qimykwiepk icredlpdal tlppsgerkd cppcnpgfys nassscspcp
      301 pgtfsdgtqe ckacpagtep algfeykwwn ilpsnmktsc fnvgnskcdg mngwevagdh
      361 iqsgaggsdn dylilnlhip gfkpptsvtg atgselgrit fvfeticsad cvlyfmadvn
      421 rkstnvvesw erskekqsyt hiisknasft ftwafqrine gqdsrqfind makiysisvt
      481 navdgvassc qacalgseqs gsscvpcpag hyieketnqc kecpantfls vhqvygreac
      541 ipcgpgskst kdhsacfsdc lvsyirdnqs vnydfsnlsq vgslmsgpsf tsrgtkffhf
      601 fnislcgneg kkmavctdni tdvtlkdmva esedfsnfvg afvcqstiip sdskgfrtal
      661 alqsnsladr flgatvettl enisintdif ppspskipdv hffyksstvt tscengratv
      721 vtmrcnpnkp dqgelsvpsl cpagtcdgct fyfvwesaea cplcmeqdyh eiegackkgf
      781 qetlyvwnep kycikgvplp ekrtstcetv dfwlkvgagv gaftavllia ltcyfwkknq
      841 kleykysklv mtanskecel paadscaime gedneeeivy snkqsllgkl kslatkeked
      901 nfesvqlkss rsqni
//
LOCUS       XP_053919043             915 aa            linear   VRT 09-MAR-2023
DEFINITION  endosome/lysosome-associated apoptosis and autophagy regulator
            family member 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053919043
VERSION     XP_053919043.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063068.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..915
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..915
                     /product="endosome/lysosome-associated apoptosis and
                     autophagy regulator family member 2 isoform X2"
                     /calculated_mol_wt=100676
     Region          287..>318
                     /region_name="Ephrin_rec_like"
                     /note="Tyrosine-protein kinase ephrin type A/B
                     receptor-like; pfam07699"
                     /db_xref="CDD:429604"
     CDS             1..915
                     /gene="ELAPOR2"
                     /coded_by="XM_054063068.1:137..2884"
                     /db_xref="GeneID:104066147"
ORIGIN      
        1 mknqvcskca egtyslgsgi kfdewdelpa gfsnvatfmd tavgsaenka dscnnsswtp
       61 rgnyiesnrd dctvsliyav hlkksgfvff eyqyidnnif feffiqndqc kemestadkw
      121 vkltdngewg shsvtlksgs nilywrttgi lmgskvvkpv lvknitiegv aytsecfpck
      181 pgtfsdkpgs sgcqvcprnt ysekgakect kckeemyyad egssaciqrp pctnkdffqi
      241 htpcdkegkt qimykwiepk icredlpdal tlppsgerkd cppcnpgfys nassscspcp
      301 pgtfsdgtqe ckacpagtep algfeykwwn ilpsnmktsc fnvgnskcdg mngwevagdh
      361 iqsgaggsdn dylilnlhip gfkpptsvtg atgselgrit fvfeticsad cvlyfmadvn
      421 rkstnvvesw erskekqsyt hiisknasft ftwafqrine gqdsrqfind makiysisvt
      481 navdgvassc qacalgseqs gsscvpcpag hyieketnqc kecpantfls vhqvygreac
      541 ipcgpgskst kdhsacfsdc lvsyirdnqs vnydfsnlsq vgslmsgpsf tsrgtkffhf
      601 fnislcgneg kkmavctdni tdvtlkdmva esedfsnfvg afvcqstiip sdskgfrtal
      661 alqsnsladr flgatvettl enisintdif ppspskipdv hffyksstvt tscengratv
      721 vtmrcnpnkp dqgelsvpsl cpagtcdgct fyfvwesaea cplcmeqdyh eiegackkgf
      781 qetlyvwnep kycikgvplp ekrtstcetv dfwlkvgagv gaftavllia ltcyfwkknq
      841 kleykysklv mtanskecel paadscaime gedneeeivy snkqsllgkl kslatkeked
      901 nfesvqlkss rsqni
//
LOCUS       XP_053919056             889 aa            linear   VRT 09-MAR-2023
DEFINITION  metabotropic glutamate receptor 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053919056
VERSION     XP_053919056.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063081.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..889
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..889
                     /product="metabotropic glutamate receptor 3 isoform X1"
                     /calculated_mol_wt=99857
     Region          43..503
                     /region_name="PBP1_mGluR_groupII"
                     /note="ligand binding domain of the group II metabotropic
                     glutamate receptor; cd06375"
                     /db_xref="CDD:380598"
     Site            order(74,78,160..161,182..184,232,311,399)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:380598"
     Site            order(113,116,166,169,192,256)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:380598"
     Region          515..565
                     /region_name="NCD3G"
                     /note="Nine Cysteines Domain of family 3 GPCR; pfam07562"
                     /db_xref="CDD:462210"
     Region          585..838
                     /region_name="7tmC_mGluR3"
                     /note="metabotropic glutamate receptor 3 in group 2,
                     member of the class C family of seven-transmembrane G
                     protein-coupled receptors; cd15448"
                     /db_xref="CDD:320564"
     Region          585..610
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320564"
     Site            order(588,591..592,595..596,598..599,633,637,640..641,649,
                     653)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:320564"
     Region          622..643
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320564"
     Site            order(642,654..655,658..659,662,742,747,750..751,754,788,
                     791..792,795,799,809..810,813,816,820)
                     /site_type="other"
                     /note="putative allosteric modulator binding site
                     [chemical binding]"
                     /db_xref="CDD:320564"
     Region          652..676
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320564"
     Region          698..718
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320564"
     Region          743..769
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320564"
     Region          777..800
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320564"
     Region          807..832
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320564"
     CDS             1..889
                     /gene="GRM3"
                     /coded_by="XM_054063081.1:944..3613"
                     /db_xref="GeneID:104066136"
ORIGIN      
        1 mfltaaktgp mkmftrlqvl alalfskgvf lslsdhsfvr keikiegdlv lgglfpinek
       61 gtgieecgri nedrgiqrle amlfaidein rdnyllpgik lgvhildtcs rdtyaleqsl
      121 efvrasltkv deteymcpdg syaiqenlpl liagviggsy ssvsiqvanl lrlfqipqis
      181 yastsaklsd ksrydyfart vppdfyqaka maeilryfnw tyvstvaseg dygetgieaf
      241 eqearlrnic iatsekvgrs nirksydgvi rellqkpnar vvvlfmradd sreliaaanr
      301 fnvsftwias dgwgaqesiv kgnehiasga itlelashpv kefdryfqsl spynnrrnpw
      361 fkdfweqkfq cnlqnrkphk kacdkhftin ssnyeqeski mfvvnavyam ahalhkmqrt
      421 lcpnttklcd amkhldgrkl ykdyllkvnf tapfnppnaa dstvkfdayg dgigrynvfn
      481 fqytggrysy vkvghwaetl sleadsihws rnsvpvsqcs dpcapnemkn mqpgdvccwi
      541 cipcetyeyl adeftcadcg pgkwptadlt gcydlpedyi kwedawaigp vtiaclgfic
      601 tfmviavfik hnntplvkas grelcyillf gvflsysmtf ffiakpspai ctlrrlglgs
      661 sfavcysall tktnciarif dgvkngaqrp kfispssqvf iclslilvqi vmvsvwlile
      721 apgtrrytlp ekretvilkc nvkdssmlis ltydvilvvl ctvyafktrk cpenfneakf
      781 igftmyttci iwlaflpify vtssdyrvqt ttmcisvsls gfvvlgclfa pkvhiilfqp
      841 qknvvthrlh lnrfsvsgtg ttysqssasm yvptvcngre vldsttssl
//
LOCUS       XP_053919067             889 aa            linear   VRT 09-MAR-2023
DEFINITION  metabotropic glutamate receptor 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053919067
VERSION     XP_053919067.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063092.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..889
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..889
                     /product="metabotropic glutamate receptor 3 isoform X1"
                     /calculated_mol_wt=99857
     Region          43..503
                     /region_name="PBP1_mGluR_groupII"
                     /note="ligand binding domain of the group II metabotropic
                     glutamate receptor; cd06375"
                     /db_xref="CDD:380598"
     Site            order(74,78,160..161,182..184,232,311,399)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:380598"
     Site            order(113,116,166,169,192,256)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:380598"
     Region          515..565
                     /region_name="NCD3G"
                     /note="Nine Cysteines Domain of family 3 GPCR; pfam07562"
                     /db_xref="CDD:462210"
     Region          585..838
                     /region_name="7tmC_mGluR3"
                     /note="metabotropic glutamate receptor 3 in group 2,
                     member of the class C family of seven-transmembrane G
                     protein-coupled receptors; cd15448"
                     /db_xref="CDD:320564"
     Region          585..610
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320564"
     Site            order(588,591..592,595..596,598..599,633,637,640..641,649,
                     653)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:320564"
     Region          622..643
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320564"
     Site            order(642,654..655,658..659,662,742,747,750..751,754,788,
                     791..792,795,799,809..810,813,816,820)
                     /site_type="other"
                     /note="putative allosteric modulator binding site
                     [chemical binding]"
                     /db_xref="CDD:320564"
     Region          652..676
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320564"
     Region          698..718
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320564"
     Region          743..769
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320564"
     Region          777..800
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320564"
     Region          807..832
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320564"
     CDS             1..889
                     /gene="GRM3"
                     /coded_by="XM_054063092.1:1055..3724"
                     /db_xref="GeneID:104066136"
ORIGIN      
        1 mfltaaktgp mkmftrlqvl alalfskgvf lslsdhsfvr keikiegdlv lgglfpinek
       61 gtgieecgri nedrgiqrle amlfaidein rdnyllpgik lgvhildtcs rdtyaleqsl
      121 efvrasltkv deteymcpdg syaiqenlpl liagviggsy ssvsiqvanl lrlfqipqis
      181 yastsaklsd ksrydyfart vppdfyqaka maeilryfnw tyvstvaseg dygetgieaf
      241 eqearlrnic iatsekvgrs nirksydgvi rellqkpnar vvvlfmradd sreliaaanr
      301 fnvsftwias dgwgaqesiv kgnehiasga itlelashpv kefdryfqsl spynnrrnpw
      361 fkdfweqkfq cnlqnrkphk kacdkhftin ssnyeqeski mfvvnavyam ahalhkmqrt
      421 lcpnttklcd amkhldgrkl ykdyllkvnf tapfnppnaa dstvkfdayg dgigrynvfn
      481 fqytggrysy vkvghwaetl sleadsihws rnsvpvsqcs dpcapnemkn mqpgdvccwi
      541 cipcetyeyl adeftcadcg pgkwptadlt gcydlpedyi kwedawaigp vtiaclgfic
      601 tfmviavfik hnntplvkas grelcyillf gvflsysmtf ffiakpspai ctlrrlglgs
      661 sfavcysall tktnciarif dgvkngaqrp kfispssqvf iclslilvqi vmvsvwlile
      721 apgtrrytlp ekretvilkc nvkdssmlis ltydvilvvl ctvyafktrk cpenfneakf
      781 igftmyttci iwlaflpify vtssdyrvqt ttmcisvsls gfvvlgclfa pkvhiilfqp
      841 qknvvthrlh lnrfsvsgtg ttysqssasm yvptvcngre vldsttssl
//
LOCUS       XP_053919076             889 aa            linear   VRT 09-MAR-2023
DEFINITION  metabotropic glutamate receptor 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053919076
VERSION     XP_053919076.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063101.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..889
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..889
                     /product="metabotropic glutamate receptor 3 isoform X1"
                     /calculated_mol_wt=99857
     Region          43..503
                     /region_name="PBP1_mGluR_groupII"
                     /note="ligand binding domain of the group II metabotropic
                     glutamate receptor; cd06375"
                     /db_xref="CDD:380598"
     Site            order(74,78,160..161,182..184,232,311,399)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:380598"
     Site            order(113,116,166,169,192,256)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:380598"
     Region          515..565
                     /region_name="NCD3G"
                     /note="Nine Cysteines Domain of family 3 GPCR; pfam07562"
                     /db_xref="CDD:462210"
     Region          585..838
                     /region_name="7tmC_mGluR3"
                     /note="metabotropic glutamate receptor 3 in group 2,
                     member of the class C family of seven-transmembrane G
                     protein-coupled receptors; cd15448"
                     /db_xref="CDD:320564"
     Region          585..610
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320564"
     Site            order(588,591..592,595..596,598..599,633,637,640..641,649,
                     653)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:320564"
     Region          622..643
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320564"
     Site            order(642,654..655,658..659,662,742,747,750..751,754,788,
                     791..792,795,799,809..810,813,816,820)
                     /site_type="other"
                     /note="putative allosteric modulator binding site
                     [chemical binding]"
                     /db_xref="CDD:320564"
     Region          652..676
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320564"
     Region          698..718
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320564"
     Region          743..769
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320564"
     Region          777..800
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320564"
     Region          807..832
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320564"
     CDS             1..889
                     /gene="GRM3"
                     /coded_by="XM_054063101.1:271..2940"
                     /db_xref="GeneID:104066136"
ORIGIN      
        1 mfltaaktgp mkmftrlqvl alalfskgvf lslsdhsfvr keikiegdlv lgglfpinek
       61 gtgieecgri nedrgiqrle amlfaidein rdnyllpgik lgvhildtcs rdtyaleqsl
      121 efvrasltkv deteymcpdg syaiqenlpl liagviggsy ssvsiqvanl lrlfqipqis
      181 yastsaklsd ksrydyfart vppdfyqaka maeilryfnw tyvstvaseg dygetgieaf
      241 eqearlrnic iatsekvgrs nirksydgvi rellqkpnar vvvlfmradd sreliaaanr
      301 fnvsftwias dgwgaqesiv kgnehiasga itlelashpv kefdryfqsl spynnrrnpw
      361 fkdfweqkfq cnlqnrkphk kacdkhftin ssnyeqeski mfvvnavyam ahalhkmqrt
      421 lcpnttklcd amkhldgrkl ykdyllkvnf tapfnppnaa dstvkfdayg dgigrynvfn
      481 fqytggrysy vkvghwaetl sleadsihws rnsvpvsqcs dpcapnemkn mqpgdvccwi
      541 cipcetyeyl adeftcadcg pgkwptadlt gcydlpedyi kwedawaigp vtiaclgfic
      601 tfmviavfik hnntplvkas grelcyillf gvflsysmtf ffiakpspai ctlrrlglgs
      661 sfavcysall tktnciarif dgvkngaqrp kfispssqvf iclslilvqi vmvsvwlile
      721 apgtrrytlp ekretvilkc nvkdssmlis ltydvilvvl ctvyafktrk cpenfneakf
      781 igftmyttci iwlaflpify vtssdyrvqt ttmcisvsls gfvvlgclfa pkvhiilfqp
      841 qknvvthrlh lnrfsvsgtg ttysqssasm yvptvcngre vldsttssl
//
LOCUS       XP_053919085             889 aa            linear   VRT 09-MAR-2023
DEFINITION  metabotropic glutamate receptor 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053919085
VERSION     XP_053919085.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063110.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..889
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..889
                     /product="metabotropic glutamate receptor 3 isoform X1"
                     /calculated_mol_wt=99857
     Region          43..503
                     /region_name="PBP1_mGluR_groupII"
                     /note="ligand binding domain of the group II metabotropic
                     glutamate receptor; cd06375"
                     /db_xref="CDD:380598"
     Site            order(74,78,160..161,182..184,232,311,399)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:380598"
     Site            order(113,116,166,169,192,256)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:380598"
     Region          515..565
                     /region_name="NCD3G"
                     /note="Nine Cysteines Domain of family 3 GPCR; pfam07562"
                     /db_xref="CDD:462210"
     Region          585..838
                     /region_name="7tmC_mGluR3"
                     /note="metabotropic glutamate receptor 3 in group 2,
                     member of the class C family of seven-transmembrane G
                     protein-coupled receptors; cd15448"
                     /db_xref="CDD:320564"
     Region          585..610
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320564"
     Site            order(588,591..592,595..596,598..599,633,637,640..641,649,
                     653)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:320564"
     Region          622..643
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320564"
     Site            order(642,654..655,658..659,662,742,747,750..751,754,788,
                     791..792,795,799,809..810,813,816,820)
                     /site_type="other"
                     /note="putative allosteric modulator binding site
                     [chemical binding]"
                     /db_xref="CDD:320564"
     Region          652..676
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320564"
     Region          698..718
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320564"
     Region          743..769
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320564"
     Region          777..800
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320564"
     Region          807..832
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320564"
     CDS             1..889
                     /gene="GRM3"
                     /coded_by="XM_054063110.1:839..3508"
                     /db_xref="GeneID:104066136"
ORIGIN      
        1 mfltaaktgp mkmftrlqvl alalfskgvf lslsdhsfvr keikiegdlv lgglfpinek
       61 gtgieecgri nedrgiqrle amlfaidein rdnyllpgik lgvhildtcs rdtyaleqsl
      121 efvrasltkv deteymcpdg syaiqenlpl liagviggsy ssvsiqvanl lrlfqipqis
      181 yastsaklsd ksrydyfart vppdfyqaka maeilryfnw tyvstvaseg dygetgieaf
      241 eqearlrnic iatsekvgrs nirksydgvi rellqkpnar vvvlfmradd sreliaaanr
      301 fnvsftwias dgwgaqesiv kgnehiasga itlelashpv kefdryfqsl spynnrrnpw
      361 fkdfweqkfq cnlqnrkphk kacdkhftin ssnyeqeski mfvvnavyam ahalhkmqrt
      421 lcpnttklcd amkhldgrkl ykdyllkvnf tapfnppnaa dstvkfdayg dgigrynvfn
      481 fqytggrysy vkvghwaetl sleadsihws rnsvpvsqcs dpcapnemkn mqpgdvccwi
      541 cipcetyeyl adeftcadcg pgkwptadlt gcydlpedyi kwedawaigp vtiaclgfic
      601 tfmviavfik hnntplvkas grelcyillf gvflsysmtf ffiakpspai ctlrrlglgs
      661 sfavcysall tktnciarif dgvkngaqrp kfispssqvf iclslilvqi vmvsvwlile
      721 apgtrrytlp ekretvilkc nvkdssmlis ltydvilvvl ctvyafktrk cpenfneakf
      781 igftmyttci iwlaflpify vtssdyrvqt ttmcisvsls gfvvlgclfa pkvhiilfqp
      841 qknvvthrlh lnrfsvsgtg ttysqssasm yvptvcngre vldsttssl
//
LOCUS       XP_053919093             889 aa            linear   VRT 09-MAR-2023
DEFINITION  metabotropic glutamate receptor 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053919093
VERSION     XP_053919093.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063118.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..889
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..889
                     /product="metabotropic glutamate receptor 3 isoform X1"
                     /calculated_mol_wt=99857
     Region          43..503
                     /region_name="PBP1_mGluR_groupII"
                     /note="ligand binding domain of the group II metabotropic
                     glutamate receptor; cd06375"
                     /db_xref="CDD:380598"
     Site            order(74,78,160..161,182..184,232,311,399)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:380598"
     Site            order(113,116,166,169,192,256)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:380598"
     Region          515..565
                     /region_name="NCD3G"
                     /note="Nine Cysteines Domain of family 3 GPCR; pfam07562"
                     /db_xref="CDD:462210"
     Region          585..838
                     /region_name="7tmC_mGluR3"
                     /note="metabotropic glutamate receptor 3 in group 2,
                     member of the class C family of seven-transmembrane G
                     protein-coupled receptors; cd15448"
                     /db_xref="CDD:320564"
     Region          585..610
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320564"
     Site            order(588,591..592,595..596,598..599,633,637,640..641,649,
                     653)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:320564"
     Region          622..643
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320564"
     Site            order(642,654..655,658..659,662,742,747,750..751,754,788,
                     791..792,795,799,809..810,813,816,820)
                     /site_type="other"
                     /note="putative allosteric modulator binding site
                     [chemical binding]"
                     /db_xref="CDD:320564"
     Region          652..676
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320564"
     Region          698..718
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320564"
     Region          743..769
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320564"
     Region          777..800
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320564"
     Region          807..832
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320564"
     CDS             1..889
                     /gene="GRM3"
                     /coded_by="XM_054063118.1:950..3619"
                     /db_xref="GeneID:104066136"
ORIGIN      
        1 mfltaaktgp mkmftrlqvl alalfskgvf lslsdhsfvr keikiegdlv lgglfpinek
       61 gtgieecgri nedrgiqrle amlfaidein rdnyllpgik lgvhildtcs rdtyaleqsl
      121 efvrasltkv deteymcpdg syaiqenlpl liagviggsy ssvsiqvanl lrlfqipqis
      181 yastsaklsd ksrydyfart vppdfyqaka maeilryfnw tyvstvaseg dygetgieaf
      241 eqearlrnic iatsekvgrs nirksydgvi rellqkpnar vvvlfmradd sreliaaanr
      301 fnvsftwias dgwgaqesiv kgnehiasga itlelashpv kefdryfqsl spynnrrnpw
      361 fkdfweqkfq cnlqnrkphk kacdkhftin ssnyeqeski mfvvnavyam ahalhkmqrt
      421 lcpnttklcd amkhldgrkl ykdyllkvnf tapfnppnaa dstvkfdayg dgigrynvfn
      481 fqytggrysy vkvghwaetl sleadsihws rnsvpvsqcs dpcapnemkn mqpgdvccwi
      541 cipcetyeyl adeftcadcg pgkwptadlt gcydlpedyi kwedawaigp vtiaclgfic
      601 tfmviavfik hnntplvkas grelcyillf gvflsysmtf ffiakpspai ctlrrlglgs
      661 sfavcysall tktnciarif dgvkngaqrp kfispssqvf iclslilvqi vmvsvwlile
      721 apgtrrytlp ekretvilkc nvkdssmlis ltydvilvvl ctvyafktrk cpenfneakf
      781 igftmyttci iwlaflpify vtssdyrvqt ttmcisvsls gfvvlgclfa pkvhiilfqp
      841 qknvvthrlh lnrfsvsgtg ttysqssasm yvptvcngre vldsttssl
//
LOCUS       XP_053919102             865 aa            linear   VRT 09-MAR-2023
DEFINITION  metabotropic glutamate receptor 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053919102
VERSION     XP_053919102.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063127.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..865
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..865
                     /product="metabotropic glutamate receptor 3 isoform X2"
                     /calculated_mol_wt=97370
     Region          43..503
                     /region_name="PBP1_mGluR_groupII"
                     /note="ligand binding domain of the group II metabotropic
                     glutamate receptor; cd06375"
                     /db_xref="CDD:380598"
     Site            order(74,78,160..161,182..184,232,311,399)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:380598"
     Site            order(113,116,166,169,192,256)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:380598"
     Region          515..565
                     /region_name="NCD3G"
                     /note="Nine Cysteines Domain of family 3 GPCR; pfam07562"
                     /db_xref="CDD:462210"
     Region          585..838
                     /region_name="7tmC_mGluR3"
                     /note="metabotropic glutamate receptor 3 in group 2,
                     member of the class C family of seven-transmembrane G
                     protein-coupled receptors; cd15448"
                     /db_xref="CDD:320564"
     Region          585..610
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320564"
     Site            order(588,591..592,595..596,598..599,633,637,640..641,649,
                     653)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:320564"
     Region          622..643
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320564"
     Site            order(642,654..655,658..659,662,742,747,750..751,754,788,
                     791..792,795,799,809..810,813,816,820)
                     /site_type="other"
                     /note="putative allosteric modulator binding site
                     [chemical binding]"
                     /db_xref="CDD:320564"
     Region          652..676
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320564"
     Region          698..718
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320564"
     Region          743..769
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320564"
     Region          777..800
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320564"
     Region          807..832
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320564"
     CDS             1..865
                     /gene="GRM3"
                     /coded_by="XM_054063127.1:944..3541"
                     /db_xref="GeneID:104066136"
ORIGIN      
        1 mfltaaktgp mkmftrlqvl alalfskgvf lslsdhsfvr keikiegdlv lgglfpinek
       61 gtgieecgri nedrgiqrle amlfaidein rdnyllpgik lgvhildtcs rdtyaleqsl
      121 efvrasltkv deteymcpdg syaiqenlpl liagviggsy ssvsiqvanl lrlfqipqis
      181 yastsaklsd ksrydyfart vppdfyqaka maeilryfnw tyvstvaseg dygetgieaf
      241 eqearlrnic iatsekvgrs nirksydgvi rellqkpnar vvvlfmradd sreliaaanr
      301 fnvsftwias dgwgaqesiv kgnehiasga itlelashpv kefdryfqsl spynnrrnpw
      361 fkdfweqkfq cnlqnrkphk kacdkhftin ssnyeqeski mfvvnavyam ahalhkmqrt
      421 lcpnttklcd amkhldgrkl ykdyllkvnf tapfnppnaa dstvkfdayg dgigrynvfn
      481 fqytggrysy vkvghwaetl sleadsihws rnsvpvsqcs dpcapnemkn mqpgdvccwi
      541 cipcetyeyl adeftcadcg pgkwptadlt gcydlpedyi kwedawaigp vtiaclgfic
      601 tfmviavfik hnntplvkas grelcyillf gvflsysmtf ffiakpspai ctlrrlglgs
      661 sfavcysall tktnciarif dgvkngaqrp kfispssqvf iclslilvqi vmvsvwlile
      721 apgtrrytlp ekretvilkc nvkdssmlis ltydvilvvl ctvyafktrk cpenfneakf
      781 igftmyttci iwlaflpify vtssdyrvqt ttmcisvsls gfvvlgclfa pkvhiilfqp
      841 qknvvthrlh lnrfsvsgtg ttysq
//
LOCUS       XP_053919113             588 aa            linear   VRT 09-MAR-2023
DEFINITION  mitochondrial import receptor subunit TOM70 [Cuculus canorus].
ACCESSION   XP_053919113
VERSION     XP_053919113.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063138.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..588
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..588
                     /product="mitochondrial import receptor subunit TOM70"
                     /calculated_mol_wt=64992
     Region          <94..581
                     /region_name="3a0801s09"
                     /note="mitochondrial precursor proteins import receptor
                     (72 kDa mitochondrial outermembrane protein)
                     (mitochondrial import receptor for the ADP/ATP carrier)
                     (translocase of outermembrane tom70); TIGR00990"
                     /db_xref="CDD:273380"
     Region          94..122
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(95,98..99,102..103,105,134,137..138,141..142,
                     144..145,168,171..172,175..176,179)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          132..162
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          309..337
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(310,313..314,317..318,320,348,351..352,355..356,
                     358..359,382,385..386,389..390,393)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          342..376
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          381..409
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          456..484
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(457,460..461,464..465,467,491,494..495,498..499,
                     501..502,526,529..530,533..534,537)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          489..520
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          525..552
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..588
                     /gene="TOMM70"
                     /coded_by="XM_054063138.1:97..1863"
                     /db_xref="GeneID:104055830"
ORIGIN      
        1 maaskpveat ggggggggtg lsrwqlalvl gapillgaga lylwgrraar rkgaserktp
       61 egraspgpss cgggggggqp dgpghedtsp ldkaqaaknk gnkyfkagky eqaiqcytea
      121 islcppeknl dlstfyqnra aayeqlqkwt evaqdctkav elnpkyvkal frrakahekl
      181 dnkkecledv tavcileafq nqqsmlladk vlkllgkeka kekyknrepl mpspqfiksy
      241 fssftddiis qpllkgeksd edkdkegeas evkensgylk akqymeeeny dkiisestke
      301 ieakgkymae alllratfyl lignanaakp dldqvismed anvklranal ikrgsmymqq
      361 qqpvlstqdf nmaadidpqn advyhhrgql killdqieea vedfdecirl rpdsalaqaq
      421 kcfalyrqay tgnsplsvqa amkgfedvik kfpkcaegya lyaqaltdqq qfgkademyd
      481 kcidlepdna ttyvhkgllq lqwkqdldrg leliskaiei dnkcdfayet mgtievqrgn
      541 ldkaiemfnk ainlakseme mahlyslcda ayaqtevakk yglkpptl
//
LOCUS       XP_053919125             282 aa            linear   VRT 09-MAR-2023
DEFINITION  omega-amidase NIT2 [Cuculus canorus].
ACCESSION   XP_053919125
VERSION     XP_053919125.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063150.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..282
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..282
                     /product="omega-amidase NIT2"
                     /calculated_mol_wt=31001
     Region          12..272
                     /region_name="nit"
                     /note="Nit1, Nit 2, and related proteins, and the
                     Nit1-like domain of NitFhit (class 10 nitrilases);
                     cd07572"
                     /db_xref="CDD:143596"
     Site            order(50,102,119,123,135,160..161,163..164,185)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:143596"
     Site            order(50,119,160)
                     /site_type="active"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:143596"
     Site            order(120..121,141..143,161,164..168,170..171,193..194,
                     197..198,200..202,204..205,235,265..266,269..270,272)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:143596"
     CDS             1..282
                     /gene="NIT2"
                     /coded_by="XM_054063150.1:10..858"
                     /db_xref="GeneID:104055831"
ORIGIN      
        1 mraargaman frlaliqlhv stvksdnlqr acglvreasa kgakvvalpe cfnspygtqy
       61 fkeyaekipg ettqklseta kecsiylvgg sipeedggkl yntctvfgpd gamlakhrkv
      121 hlfdinipgk iqfkesetls pgnslsmfdt pyckmglgic ydirfaemaq iygqkgcqml
      181 iypgafnltt gpahwellqr gravdnqvyv atvspardek asyvawghst vvnpwgevia
      241 kagaeetvvy teidlkklae irqqipilsq krcdvygiem kk
//
LOCUS       XP_053919132            1261 aa            linear   VRT 09-MAR-2023
DEFINITION  tripeptidyl-peptidase 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053919132
VERSION     XP_053919132.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063157.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1261
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1261
                     /product="tripeptidyl-peptidase 2 isoform X1"
                     /calculated_mol_wt=139442
     Region          13..488
                     /region_name="Peptidases_S8_Tripeptidyl_Aminopeptidase_II"
                     /note="Peptidase S8 family domain in Tripeptidyl
                     aminopeptidases_II; cd04857"
                     /db_xref="CDD:173796"
     Site            order(43,263,448)
                     /site_type="active"
                     /note="putative catalytic triad [active]"
                     /db_xref="CDD:173796"
     Site            order(189,263,327..329,361,448)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:173796"
     Region          776..962
                     /region_name="TPPII"
                     /note="Tripeptidyl peptidase II; pfam12580"
                     /db_xref="CDD:463636"
     CDS             1..1261
                     /gene="TPP2"
                     /coded_by="XM_054063157.1:94..3879"
                     /db_xref="GeneID:104062988"
ORIGIN      
        1 maaaaeepfp lhgllpkket gaaaflarfp dydgrgvlla vldtgvdpga pgmqittdgk
       61 pkiidiidtt gsgdvttcti vepkdgeiig lsgrtlkipa nwvnpsckyh igikngydiy
      121 pkalkeriqk erkeklwdpv hrlalaeacr kqeefdaahs spsqvnkllk eelqnqvell
      181 nsfekkysdp gpvydcvvwn dgetwracid tsesgdlssc tvlrtykeaq eygsfgtsem
      241 lnysiniydd gnllsivtsg gahgthvasi aagyfpeepe rngvapgaqi laikigdtrl
      301 stmetgtgli ramieaikyk cdlvnysyge athwpnsgri cevineavwk hnviyvssag
      361 nngpclstvg cpggttssvi gvgayvspdm mvaeyslrek lpanqytwss rgpstdgalg
      421 vsisapggai asvpnwtlrg tqlmngtsms spnacggial vlsglkandi hysvhsvrra
      481 lentavkaen ievfaqghgi iqvdkaydyl iqnssftsni gftvtvgsnr giylrdaaqi
      541 aapsdhgvgi epvfpenten terislqlhl altsnapwvq cpshlelmnq crhinirvdp
      601 rglregvhyt evcgydiamp nagplfrvpi tvviptrvee sssydltytd vhfkpgqirr
      661 hfidvpqgat waevtvcscs advtakfvlh avqlvkqkay rshefykfss lpekgsvtea
      721 fpvlagktle fcvarwwasl sdvsinytis fhgvlcatpq lnmhasegiv rfdvqsllky
      781 ediapcinlk swvqtlrpvn akikplgsrd vlpnnrqlye miltynfhqp ksgevtpscp
      841 llcellyese fdsqlwiifd qnkrqmgsgd ayphqysvkl ekgdytirlq irheqnseld
      901 rikdlpfivs hrlsstlsld iyenhslall gkkksnsltl ppkhsqpffv tslpddkipk
      961 gagpgcylag altlsktelg kkagqsaakr qgkfkkdilt vhyhlipsps ktkngskeke
     1021 keqekekdvk eefaealrdl kiqwmtkldt tdmynelkea fpnhlplyva rlhqldseke
     1081 rmkrldeive aantvishid qtalavyfam ktdprpdatt iknemekqks tlvdalcrkg
     1141 saladqllhl qaqegaassd aegkdedhes csealtetfw ettkwtdlfd skvltfaykh
     1201 alvnklygrg lkfatklaee kptkdnlknc iqlmkllgwt hcatftenwl pvmyppdycv
     1261 f
//
LOCUS       XP_053919138            1248 aa            linear   VRT 09-MAR-2023
DEFINITION  tripeptidyl-peptidase 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053919138
VERSION     XP_053919138.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063163.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1248
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1248
                     /product="tripeptidyl-peptidase 2 isoform X2"
                     /calculated_mol_wt=138026
     Region          13..488
                     /region_name="Peptidases_S8_Tripeptidyl_Aminopeptidase_II"
                     /note="Peptidase S8 family domain in Tripeptidyl
                     aminopeptidases_II; cd04857"
                     /db_xref="CDD:173796"
     Site            order(43,263,448)
                     /site_type="active"
                     /note="putative catalytic triad [active]"
                     /db_xref="CDD:173796"
     Site            order(189,263,327..329,361,448)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:173796"
     Region          776..962
                     /region_name="TPPII"
                     /note="Tripeptidyl peptidase II; pfam12580"
                     /db_xref="CDD:463636"
     CDS             1..1248
                     /gene="TPP2"
                     /coded_by="XM_054063163.1:93..3839"
                     /db_xref="GeneID:104062988"
ORIGIN      
        1 maaaaeepfp lhgllpkket gaaaflarfp dydgrgvlla vldtgvdpga pgmqittdgk
       61 pkiidiidtt gsgdvttcti vepkdgeiig lsgrtlkipa nwvnpsckyh igikngydiy
      121 pkalkeriqk erkeklwdpv hrlalaeacr kqeefdaahs spsqvnkllk eelqnqvell
      181 nsfekkysdp gpvydcvvwn dgetwracid tsesgdlssc tvlrtykeaq eygsfgtsem
      241 lnysiniydd gnllsivtsg gahgthvasi aagyfpeepe rngvapgaqi laikigdtrl
      301 stmetgtgli ramieaikyk cdlvnysyge athwpnsgri cevineavwk hnviyvssag
      361 nngpclstvg cpggttssvi gvgayvspdm mvaeyslrek lpanqytwss rgpstdgalg
      421 vsisapggai asvpnwtlrg tqlmngtsms spnacggial vlsglkandi hysvhsvrra
      481 lentavkaen ievfaqghgi iqvdkaydyl iqnssftsni gftvtvgsnr giylrdaaqi
      541 aapsdhgvgi epvfpenten terislqlhl altsnapwvq cpshlelmnq crhinirvdp
      601 rglregvhyt evcgydiamp nagplfrvpi tvviptrvee sssydltytd vhfkpgqirr
      661 hfidvpqgat waevtvcscs advtakfvlh avqlvkqkay rshefykfss lpekgsvtea
      721 fpvlagktle fcvarwwasl sdvsinytis fhgvlcatpq lnmhasegiv rfdvqsllky
      781 ediapcinlk swvqtlrpvn akikplgsrd vlpnnrqlye miltynfhqp ksgevtpscp
      841 llcellyese fdsqlwiifd qnkrqmgsgd ayphqysvkl ekgdytirlq irheqnseld
      901 rikdlpfivs hrlsstlsld iyenhslall gkkksnsltl ppkhsqpffv tslpddkipk
      961 gagpgcylag altlsktelg kkadiltvhy hlipspsktk ngskekekeq ekekdvkeef
     1021 aealrdlkiq wmtkldttdm ynelkeafpn hlplyvarlh qldsekermk rldeiveaan
     1081 tvishidqta lavyfamktd prpdattikn emekqkstlv dalcrkgsal adqllhlqaq
     1141 egaassdaeg kdedhescse altetfwett kwtdlfdskv ltfaykhalv nklygrglkf
     1201 atklaeekpt kdnlknciql mkllgwthca tftenwlpvm yppdycvf
//
LOCUS       XP_053919148            1135 aa            linear   VRT 09-MAR-2023
DEFINITION  tripeptidyl-peptidase 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053919148
VERSION     XP_053919148.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063173.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1135
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1135
                     /product="tripeptidyl-peptidase 2 isoform X3"
                     /calculated_mol_wt=125378
     Region          13..488
                     /region_name="Peptidases_S8_Tripeptidyl_Aminopeptidase_II"
                     /note="Peptidase S8 family domain in Tripeptidyl
                     aminopeptidases_II; cd04857"
                     /db_xref="CDD:173796"
     Site            order(43,263,448)
                     /site_type="active"
                     /note="putative catalytic triad [active]"
                     /db_xref="CDD:173796"
     Site            order(189,263,327..329,361,448)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:173796"
     Region          776..962
                     /region_name="TPPII"
                     /note="Tripeptidyl peptidase II; pfam12580"
                     /db_xref="CDD:463636"
     CDS             1..1135
                     /gene="TPP2"
                     /coded_by="XM_054063173.1:95..3502"
                     /db_xref="GeneID:104062988"
ORIGIN      
        1 maaaaeepfp lhgllpkket gaaaflarfp dydgrgvlla vldtgvdpga pgmqittdgk
       61 pkiidiidtt gsgdvttcti vepkdgeiig lsgrtlkipa nwvnpsckyh igikngydiy
      121 pkalkeriqk erkeklwdpv hrlalaeacr kqeefdaahs spsqvnkllk eelqnqvell
      181 nsfekkysdp gpvydcvvwn dgetwracid tsesgdlssc tvlrtykeaq eygsfgtsem
      241 lnysiniydd gnllsivtsg gahgthvasi aagyfpeepe rngvapgaqi laikigdtrl
      301 stmetgtgli ramieaikyk cdlvnysyge athwpnsgri cevineavwk hnviyvssag
      361 nngpclstvg cpggttssvi gvgayvspdm mvaeyslrek lpanqytwss rgpstdgalg
      421 vsisapggai asvpnwtlrg tqlmngtsms spnacggial vlsglkandi hysvhsvrra
      481 lentavkaen ievfaqghgi iqvdkaydyl iqnssftsni gftvtvgsnr giylrdaaqi
      541 aapsdhgvgi epvfpenten terislqlhl altsnapwvq cpshlelmnq crhinirvdp
      601 rglregvhyt evcgydiamp nagplfrvpi tvviptrvee sssydltytd vhfkpgqirr
      661 hfidvpqgat waevtvcscs advtakfvlh avqlvkqkay rshefykfss lpekgsvtea
      721 fpvlagktle fcvarwwasl sdvsinytis fhgvlcatpq lnmhasegiv rfdvqsllky
      781 ediapcinlk swvqtlrpvn akikplgsrd vlpnnrqlye miltynfhqp ksgevtpscp
      841 llcellyese fdsqlwiifd qnkrqmgsgd ayphqysvkl ekgdytirlq irheqnseld
      901 rikdlpfivs hrlsstlsld iyenhslall gkkksnsltl ppkhsqpffv tslpddkipk
      961 gagpgcylag altlsktelg kkagqsaakr qgkfkkdilt vhyhlipsps ktkngskeke
     1021 keqekekdvk eefaealrdl kiqwmtkldt tdmynelkea fpnhlplyva rlhqldseke
     1081 rmkrldeive aantvishid qtalavyfam ktdprpdatt ikkylpmkwk nrnql
//
LOCUS       XP_053919157             299 aa            linear   VRT 09-MAR-2023
DEFINITION  protein-lysine methyltransferase METTL21C isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053919157
VERSION     XP_053919157.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063182.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..299
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..299
                     /product="protein-lysine methyltransferase METTL21C
                     isoform X1"
                     /calculated_mol_wt=33697
     Region          113..272
                     /region_name="AdoMet_MTases"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); cl17173"
                     /db_xref="CDD:473071"
     Site            order(154..160,176..177,205..207,229)
                     /site_type="other"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]"
                     /db_xref="CDD:100107"
     CDS             1..299
                     /gene="METTL21C"
                     /coded_by="XM_054063182.1:85..984"
                     /db_xref="GeneID:104062968"
ORIGIN      
        1 mpvyknlwsv hlstgnlstf chssssgmis aqqppfpnki qgimdcqtee aetcekqcds
       61 ddctwssncs sstagltqfk cyspvilkil qnwvprvshy fdkehytyvg hqiiiqesie
      121 hfgavvwpga lalsqylesn qeqfnlkdkk vleigagtgl vsivacilga yvtatdlpev
      181 lenlsynisr ntqdmnihkp evrklvwged ldedfpvsty hydfllatdv vyhhtaldpl
      241 latmvrfckp gtvllwankf rfstdyefle klcnifntti laefpesnvk likatvren
//
LOCUS       XP_009563405             292 aa            linear   VRT 09-MAR-2023
DEFINITION  protein-lysine methyltransferase METTL21C isoform X2 [Cuculus
            canorus].
ACCESSION   XP_009563405
VERSION     XP_009563405.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565110.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009563405.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..292
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..292
                     /product="protein-lysine methyltransferase METTL21C
                     isoform X2"
                     /calculated_mol_wt=32871
     Region          106..265
                     /region_name="AdoMet_MTases"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); cl17173"
                     /db_xref="CDD:473071"
     Site            order(147..153,169..170,198..200,222)
                     /site_type="other"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]"
                     /db_xref="CDD:100107"
     CDS             1..292
                     /gene="METTL21C"
                     /coded_by="XM_009565110.2:84..962"
                     /db_xref="GeneID:104062968"
ORIGIN      
        1 mpvyknlwsv hlstgnlstf chssssgmis aqqppfpnki qgimdcqtee aetcekqcds
       61 ddctwssncs sstadspvil kilqnwvprv shyfdkehyt yvghqiiiqe siehfgavvw
      121 pgalalsqyl esnqeqfnlk dkkvleigag tglvsivaci lgayvtatdl pevlenlsyn
      181 isrntqdmni hkpevrklvw gedldedfpv styhydflla tdvvyhhtal dpllatmvrf
      241 ckpgtvllwa nkfrfstdye fleklcnifn ttilaefpes nvklikatvr en
//
LOCUS       XP_053919172             272 aa            linear   VRT 09-MAR-2023
DEFINITION  protein-lysine methyltransferase METTL21C isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053919172
VERSION     XP_053919172.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063197.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..272
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..272
                     /product="protein-lysine methyltransferase METTL21C
                     isoform X3"
                     /calculated_mol_wt=30775
     Region          86..245
                     /region_name="AdoMet_MTases"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); cl17173"
                     /db_xref="CDD:473071"
     Site            order(127..133,149..150,178..180,202)
                     /site_type="other"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]"
                     /db_xref="CDD:100107"
     CDS             1..272
                     /gene="METTL21C"
                     /coded_by="XM_054063197.1:107..925"
                     /db_xref="GeneID:104062968"
ORIGIN      
        1 misaqqppfp nkiqgimdcq teeaetcekq cdsddctwss ncssstaglt qfkcyspvil
       61 kilqnwvprv shyfdkehyt yvghqiiiqe siehfgavvw pgalalsqyl esnqeqfnlk
      121 dkkvleigag tglvsivaci lgayvtatdl pevlenlsyn isrntqdmni hkpevrklvw
      181 gedldedfpv styhydflla tdvvyhhtal dpllatmvrf ckpgtvllwa nkfrfstdye
      241 fleklcnifn ttilaefpes nvklikatvr en
//
LOCUS       XP_053919181             737 aa            linear   VRT 09-MAR-2023
DEFINITION  dynamin-1-like protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053919181
VERSION     XP_053919181.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063206.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..737
                     /product="dynamin-1-like protein isoform X1"
                     /calculated_mol_wt=81730
     Region          23..315
                     /region_name="DLP_1"
                     /note="Dynamin_like protein family includes dynamins and
                     Mx proteins; cd08771"
                     /db_xref="CDD:206738"
     Site            32..39
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206738"
     Site            order(33,35..40,53..54,59,159,229,231..232,258..262,265)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206738"
     Site            order(34..35,163,176,201,203,205..208,210..211,232,
                     234..237,261..263)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:206738"
     Site            59
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206738"
     Site            63..65
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206738"
     Site            159..162
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206738"
     Site            order(161..162,192..193)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206738"
     Site            228..231
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206738"
     Region          238..523
                     /region_name="Dynamin_M"
                     /note="Dynamin central region; pfam01031"
                     /db_xref="CDD:460033"
     Site            258..260
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206738"
     Region          641..731
                     /region_name="GED"
                     /note="Dynamin GTPase effector domain; pfam02212"
                     /db_xref="CDD:460495"
     CDS             1..737
                     /gene="DNM1L"
                     /coded_by="XM_054063206.1:133..2346"
                     /db_xref="GeneID:104056346"
ORIGIN      
        1 mealipvink lqdvfntvga diiqlpqivv vgtqssgkss vleslvgrdl lprgtgvvtr
       61 rplilqlvhv spedgrktag dendpatwkn prhlskeida eewgkflhtk nkiytdfdei
      121 rqeieneter isgnnkgisp epihlkifsa nvvnltlvdl pgmtkvpvgd qpkdielqir
      181 elilqfisnp nsiilavtaa ntdmatseal kiarevdpdg rrtlavitkl dlmdagtdam
      241 dvlmgrvipv klgiigvvnr sqldinnkks vadsirdeyg flqkkypsla nrngtkylar
      301 tlnrllmhhi rdclpelktr invlaaqyqs llnsygepve dksatllqli tkfateycnt
      361 iegtakyiet selcggaric yifhetfgrt lesvdplggl ntidiltair natgprpalf
      421 vpevsfellv krqikrleep slrcvelvhe emqriiqhcs nystqellrf pklhdaivev
      481 vtcllrrrlp vtnemvhnlv aielayintk hpdfadacgl mnnnieeqrr nrlarelpst
      541 lprdkstkap galtpasqes vtaasaeadg kavaapgage gsqepgtgnw rgmlktskae
      601 evlaeekskp aaalpaspqk ghavnlldvp vpvarklsar eqrdcevier liksyflivr
      661 kniqdsvpka vmhflvnhvk dtlqselvgq lykslllddl ltesedmaqr rkeaadmlka
      721 lqrasqiiae irethlw
//
LOCUS       XP_053919186             724 aa            linear   VRT 09-MAR-2023
DEFINITION  dynamin-1-like protein isoform X2 [Cuculus canorus].
ACCESSION   XP_053919186
VERSION     XP_053919186.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063211.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..724
                     /product="dynamin-1-like protein isoform X2"
                     /calculated_mol_wt=80199
     Region          23..302
                     /region_name="DLP_1"
                     /note="Dynamin_like protein family includes dynamins and
                     Mx proteins; cd08771"
                     /db_xref="CDD:206738"
     Site            32..39
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206738"
     Site            order(33,35..40,53..54,59,146,216,218..219,245..249,252)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206738"
     Site            order(34..35,150,163,188,190,192..195,197..198,219,
                     221..224,248..250)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:206738"
     Site            59
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206738"
     Site            63..65
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206738"
     Site            146..149
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206738"
     Site            order(148..149,179..180)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206738"
     Site            215..218
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206738"
     Region          225..510
                     /region_name="Dynamin_M"
                     /note="Dynamin central region; pfam01031"
                     /db_xref="CDD:460033"
     Site            245..247
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206738"
     Region          628..718
                     /region_name="GED"
                     /note="Dynamin GTPase effector domain; pfam02212"
                     /db_xref="CDD:460495"
     CDS             1..724
                     /gene="DNM1L"
                     /coded_by="XM_054063211.1:132..2306"
                     /db_xref="GeneID:104056346"
ORIGIN      
        1 mealipvink lqdvfntvga diiqlpqivv vgtqssgkss vleslvgrdl lprgtgvvtr
       61 rplilqlvhv spedgrktag deneidaeew gkflhtknki ytdfdeirqe ieneterisg
      121 nnkgispepi hlkifsanvv nltlvdlpgm tkvpvgdqpk dielqireli lqfisnpnsi
      181 ilavtaantd matsealkia revdpdgrrt lavitkldlm dagtdamdvl mgrvipvklg
      241 iigvvnrsql dinnkksvad sirdeygflq kkypslanrn gtkylartln rllmhhirdc
      301 lpelktrinv laaqyqslln sygepvedks atllqlitkf ateycntieg takyietsel
      361 cggaricyif hetfgrtles vdplgglnti diltairnat gprpalfvpe vsfellvkrq
      421 ikrleepslr cvelvheemq riiqhcsnys tqellrfpkl hdaivevvtc llrrrlpvtn
      481 emvhnlvaie layintkhpd fadacglmnn nieeqrrnrl arelpstlpr dkstkapgal
      541 tpasqesvta asaeadgkav aapgagegsq epgtgnwrgm lktskaeevl aeekskpaaa
      601 lpaspqkgha vnlldvpvpv arklsareqr dcevierlik syflivrkni qdsvpkavmh
      661 flvnhvkdtl qselvgqlyk slllddllte sedmaqrrke aadmlkalqr asqiiaeire
      721 thlw
//
LOCUS       XP_053919193             711 aa            linear   VRT 09-MAR-2023
DEFINITION  dynamin-1-like protein isoform X3 [Cuculus canorus].
ACCESSION   XP_053919193
VERSION     XP_053919193.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063218.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..711
                     /product="dynamin-1-like protein isoform X3"
                     /calculated_mol_wt=79303
     Region          23..315
                     /region_name="DLP_1"
                     /note="Dynamin_like protein family includes dynamins and
                     Mx proteins; cd08771"
                     /db_xref="CDD:206738"
     Site            32..39
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206738"
     Site            order(33,35..40,53..54,59,159,229,231..232,258..262,265)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206738"
     Site            order(34..35,163,176,201,203,205..208,210..211,232,
                     234..237,261..263)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:206738"
     Site            59
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206738"
     Site            63..65
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206738"
     Site            159..162
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206738"
     Site            order(161..162,192..193)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206738"
     Site            228..231
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206738"
     Region          238..523
                     /region_name="Dynamin_M"
                     /note="Dynamin central region; pfam01031"
                     /db_xref="CDD:460033"
     Site            258..260
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206738"
     Region          615..705
                     /region_name="GED"
                     /note="Dynamin GTPase effector domain; pfam02212"
                     /db_xref="CDD:460495"
     CDS             1..711
                     /gene="DNM1L"
                     /coded_by="XM_054063218.1:132..2267"
                     /db_xref="GeneID:104056346"
ORIGIN      
        1 mealipvink lqdvfntvga diiqlpqivv vgtqssgkss vleslvgrdl lprgtgvvtr
       61 rplilqlvhv spedgrktag dendpatwkn prhlskeida eewgkflhtk nkiytdfdei
      121 rqeieneter isgnnkgisp epihlkifsa nvvnltlvdl pgmtkvpvgd qpkdielqir
      181 elilqfisnp nsiilavtaa ntdmatseal kiarevdpdg rrtlavitkl dlmdagtdam
      241 dvlmgrvipv klgiigvvnr sqldinnkks vadsirdeyg flqkkypsla nrngtkylar
      301 tlnrllmhhi rdclpelktr invlaaqyqs llnsygepve dksatllqli tkfateycnt
      361 iegtakyiet selcggaric yifhetfgrt lesvdplggl ntidiltair natgprpalf
      421 vpevsfellv krqikrleep slrcvelvhe emqriiqhcs nystqellrf pklhdaivev
      481 vtcllrrrlp vtnemvhnlv aielayintk hpdfadacgl mnnnieeqrr nrlarelpst
      541 lprdkavaap gagegsqepg tgnwrgmlkt skaeevlaee kskpaaalpa spqkghavnl
      601 ldvpvpvark lsareqrdce vierliksyf livrkniqds vpkavmhflv nhvkdtlqse
      661 lvgqlyksll lddlltesed maqrrkeaad mlkalqrasq iiaeirethl w
//
LOCUS       XP_053919201             698 aa            linear   VRT 09-MAR-2023
DEFINITION  dynamin-1-like protein isoform X4 [Cuculus canorus].
ACCESSION   XP_053919201
VERSION     XP_053919201.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063226.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..698
                     /product="dynamin-1-like protein isoform X4"
                     /calculated_mol_wt=77771
     Region          23..302
                     /region_name="DLP_1"
                     /note="Dynamin_like protein family includes dynamins and
                     Mx proteins; cd08771"
                     /db_xref="CDD:206738"
     Site            32..39
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206738"
     Site            order(33,35..40,53..54,59,146,216,218..219,245..249,252)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206738"
     Site            order(34..35,150,163,188,190,192..195,197..198,219,
                     221..224,248..250)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:206738"
     Site            59
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206738"
     Site            63..65
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206738"
     Site            146..149
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206738"
     Site            order(148..149,179..180)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206738"
     Site            215..218
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206738"
     Region          225..510
                     /region_name="Dynamin_M"
                     /note="Dynamin central region; pfam01031"
                     /db_xref="CDD:460033"
     Site            245..247
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206738"
     Region          602..692
                     /region_name="GED"
                     /note="Dynamin GTPase effector domain; pfam02212"
                     /db_xref="CDD:460495"
     CDS             1..698
                     /gene="DNM1L"
                     /coded_by="XM_054063226.1:132..2228"
                     /db_xref="GeneID:104056346"
ORIGIN      
        1 mealipvink lqdvfntvga diiqlpqivv vgtqssgkss vleslvgrdl lprgtgvvtr
       61 rplilqlvhv spedgrktag deneidaeew gkflhtknki ytdfdeirqe ieneterisg
      121 nnkgispepi hlkifsanvv nltlvdlpgm tkvpvgdqpk dielqireli lqfisnpnsi
      181 ilavtaantd matsealkia revdpdgrrt lavitkldlm dagtdamdvl mgrvipvklg
      241 iigvvnrsql dinnkksvad sirdeygflq kkypslanrn gtkylartln rllmhhirdc
      301 lpelktrinv laaqyqslln sygepvedks atllqlitkf ateycntieg takyietsel
      361 cggaricyif hetfgrtles vdplgglnti diltairnat gprpalfvpe vsfellvkrq
      421 ikrleepslr cvelvheemq riiqhcsnys tqellrfpkl hdaivevvtc llrrrlpvtn
      481 emvhnlvaie layintkhpd fadacglmnn nieeqrrnrl arelpstlpr dkavaapgag
      541 egsqepgtgn wrgmlktska eevlaeeksk paaalpaspq kghavnlldv pvpvarklsa
      601 reqrdcevie rliksyfliv rkniqdsvpk avmhflvnhv kdtlqselvg qlyksllldd
      661 lltesedmaq rrkeaadmlk alqrasqiia eirethlw
//
LOCUS       XP_009555912             486 aa            linear   VRT 09-MAR-2023
DEFINITION  tyrosine--tRNA ligase, mitochondrial [Cuculus canorus].
ACCESSION   XP_009555912
VERSION     XP_009555912.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557617.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555912.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..486
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..486
                     /product="tyrosine--tRNA ligase, mitochondrial"
                     /calculated_mol_wt=53509
     Region          47..483
                     /region_name="TyrS"
                     /note="Tyrosyl-tRNA synthetase [Translation, ribosomal
                     structure and biogenesis]; COG0162"
                     /db_xref="CDD:439932"
     CDS             1..486
                     /gene="YARS2"
                     /coded_by="XM_009557617.2:25..1485"
                     /db_xref="GeneID:104056367"
ORIGIN      
        1 maaptlgrrc graaglwggp graslplslr rraheqarra rgagkgllae qcerglfqev
       61 fpalsaeeql psllepgrpp vtaycgfdpt adslhvghll pvmallhfqr aghnviavvg
      121 gataqlgdps grerarepvp aervrararg lraglvrlfe nhrellwaqa grrlgraell
      181 dnagwlgeqr lleflggagg rlrmgtllsr qscqarlrsp egmslaefly palqaydflh
      241 lhrhhgcriq lggadqmgni msgyelvtkm tgtdvfgitv plitsttgdk lgktagnavw
      301 lnrdktspfe lyqffvrqqd svvekylklf tflpleeidh vmkmhakepe kwgpqkrlaa
      361 evtklvhgre glesakrctk alyyssveal eemsdqelqe lfrqapsael mlepgmnvld
      421 lcrkanaipd gpsgyqkitd ggvsingirv tnpetvlilg qhilkngvsl lrvgkknyyi
      481 ikwlql
//
LOCUS       XP_009561874            1058 aa            linear   VRT 09-MAR-2023
DEFINITION  cadherin-like and PC-esterase domain-containing protein 1 [Cuculus
            canorus].
ACCESSION   XP_009561874
VERSION     XP_009561874.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563579.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561874.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1058
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1058
                     /product="cadherin-like and PC-esterase domain-containing
                     protein 1"
                     /calculated_mol_wt=121029
     Region          <282..419
                     /region_name="CPSase_L_D2"
                     /note="Carbamoyl-phosphate synthase L chain, ATP binding
                     domain; cl17255"
                     /db_xref="CDD:473076"
     Region          608..694
                     /region_name="Cadherin-like"
                     /note="Cadherin-like beta sandwich domain; pfam12733"
                     /db_xref="CDD:403821"
     CDS             1..1058
                     /gene="CPED1"
                     /coded_by="XM_009563579.2:445..3621"
                     /db_xref="GeneID:104061622"
ORIGIN      
        1 mvfaqvprcr rlcrprpvll alvvaiclfc qtltplmtss ivsavvngia pskltksqqg
       61 rykeispsnt hcflpgsnse vvkkiddsil qyfesrrrra vlyappahhd tdrqlcqril
      121 akhgytvtvl etkklkedpk hegpyhngig pwdlliclss rkndgtgciq iddlhhlqlf
      181 qkvnlipeiq hflcrreglc qltkafpdlq lpiitpecss qpglsrasta snmsqggeni
      241 dktrtshlqy wwkqsmsaql nqvsalsdhk dilkgqefsv imkayvlvts ltplrafihs
      301 tatvwhppkk khfsvklqrf fdiffksssp qqafsnmkev itklliitev fsessasgpn
      361 sfnqcsqcfq mltfdigfst siypvvlevh enfdfqdede sniqdqtfke flfedtfnfl
      421 lsnksstssf tealqkmygs alskdgiyhr edercfsled icsmitfike lkslgqfell
      481 fpsaapkiqt flrdlyhmvd pmgqlgsvlt vhwllsslle qfqfvtkekh tdlsewrskk
      541 nsrsssqtim kwlqprnfsr enaslkqnfp snfrksheal hyssmtkerq cshdkdtlsh
      601 vrqiftspql dlnpqfnpki keyyaevpfd mmtvkigakp sncqcqvhld qkkgpsiany
      661 plglgvnkvi ilvtddsqps pqvvssykit iyredrpslp lfdeymmcgf vqdcgarirp
      721 eescglqpls heylsaisqt mfktceagdt kgqwivpcls csdnrtcdwr qitwqphgcr
      781 ypvlakpelq rclegrrilf igdstnrgmm yyliervnkt lqewqkthdv kcyhninegk
      841 tfisysyypq fwmnasqrpt fekaleqllq rsrplentdq tvlivggvqw lnsnhlqiiq
      901 kvlnrenlsn ilviiksigm gfhlpvdgih slsqvevqnl wnenlvildt aknlgyevvd
      961 tfvitmgryk eflqgkcgch fhevvksnps eesphitmtf srhytlgkyf gtqskppqlq
     1021 dyatnsqspy hvrgpinqvy seillsrlca skrelvst
//
LOCUS       XP_053919225            1058 aa            linear   VRT 09-MAR-2023
DEFINITION  cadherin-like and PC-esterase domain-containing protein 1 [Cuculus
            canorus].
ACCESSION   XP_053919225
VERSION     XP_053919225.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063250.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1058
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1058
                     /product="cadherin-like and PC-esterase domain-containing
                     protein 1"
                     /calculated_mol_wt=121029
     Region          <282..419
                     /region_name="CPSase_L_D2"
                     /note="Carbamoyl-phosphate synthase L chain, ATP binding
                     domain; cl17255"
                     /db_xref="CDD:473076"
     Region          608..694
                     /region_name="Cadherin-like"
                     /note="Cadherin-like beta sandwich domain; pfam12733"
                     /db_xref="CDD:403821"
     CDS             1..1058
                     /gene="CPED1"
                     /coded_by="XM_054063250.1:519..3695"
                     /db_xref="GeneID:104061622"
ORIGIN      
        1 mvfaqvprcr rlcrprpvll alvvaiclfc qtltplmtss ivsavvngia pskltksqqg
       61 rykeispsnt hcflpgsnse vvkkiddsil qyfesrrrra vlyappahhd tdrqlcqril
      121 akhgytvtvl etkklkedpk hegpyhngig pwdlliclss rkndgtgciq iddlhhlqlf
      181 qkvnlipeiq hflcrreglc qltkafpdlq lpiitpecss qpglsrasta snmsqggeni
      241 dktrtshlqy wwkqsmsaql nqvsalsdhk dilkgqefsv imkayvlvts ltplrafihs
      301 tatvwhppkk khfsvklqrf fdiffksssp qqafsnmkev itklliitev fsessasgpn
      361 sfnqcsqcfq mltfdigfst siypvvlevh enfdfqdede sniqdqtfke flfedtfnfl
      421 lsnksstssf tealqkmygs alskdgiyhr edercfsled icsmitfike lkslgqfell
      481 fpsaapkiqt flrdlyhmvd pmgqlgsvlt vhwllsslle qfqfvtkekh tdlsewrskk
      541 nsrsssqtim kwlqprnfsr enaslkqnfp snfrksheal hyssmtkerq cshdkdtlsh
      601 vrqiftspql dlnpqfnpki keyyaevpfd mmtvkigakp sncqcqvhld qkkgpsiany
      661 plglgvnkvi ilvtddsqps pqvvssykit iyredrpslp lfdeymmcgf vqdcgarirp
      721 eescglqpls heylsaisqt mfktceagdt kgqwivpcls csdnrtcdwr qitwqphgcr
      781 ypvlakpelq rclegrrilf igdstnrgmm yyliervnkt lqewqkthdv kcyhninegk
      841 tfisysyypq fwmnasqrpt fekaleqllq rsrplentdq tvlivggvqw lnsnhlqiiq
      901 kvlnrenlsn ilviiksigm gfhlpvdgih slsqvevqnl wnenlvildt aknlgyevvd
      961 tfvitmgryk eflqgkcgch fhevvksnps eesphitmtf srhytlgkyf gtqskppqlq
     1021 dyatnsqspy hvrgpinqvy seillsrlca skrelvst
//
LOCUS       XP_053919236             821 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 5
            [Cuculus canorus].
ACCESSION   XP_053919236
VERSION     XP_053919236.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063261.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..821
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..821
                     /product="LOW QUALITY PROTEIN: conserved oligomeric Golgi
                     complex subunit 5"
                     /calculated_mol_wt=91060
     Region          28..150
                     /region_name="COG5"
                     /note="Golgi transport complex subunit 5; pfam10392"
                     /db_xref="CDD:192566"
     CDS             1..821
                     /gene="COG5"
                     /coded_by="XM_054063261.1:57..2522"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon"
                     /db_xref="GeneID:104056091"
ORIGIN      
        1 mereeeaaga ggaapalael ladecyadff kedfdvkayt sqsihqavia eqlaklaqgi
       61 sqldkelhlq vvarhedlla qatgiesleg vlqmmqtrig alqstvdrik vkivdpynki
      121 vsrtaqlakl qaacdllrri irilylskrl qgqlqggsre itkaaqslne ldylsqgvdl
      181 sgieviendl tfycksslev enqakrlleq gvetqnptqv gtalqvfynl gtlkdtianv
      241 vdgyctvlee niknaldikv ltqpsqtvtr ggpgraampt pgntaafraa lwtnmeklmd
      301 qicaacgqvq hlqkvltkkr dpvshvcfie eilkdgqsdi lykfwmtvte tlssqfqsat
      361 dssmflkqaf egeypkllrl yndlwkrlqq ysqniqrnfs tsgtadlfae lpqmeedtqd
      421 ifmqksqdyd pekalkdslq qyeaaylsks lsrlfdpinl vfppggrnpp ssdeldsiik
      481 tiaselnvaa vdadlslava knvaktvqly gvkseqllst qgdasqvigp ltegqrrnva
      541 vvnslyklhq svlkvitnqs sfpaaaeqtv ttalkavhdl mgsavqplln svgdsveaii
      601 itmhqedfsg slsssgkpdv pcslymkelq gfiarvmsdy frhfecfdfv fdnteamaqr
      661 aielfirnas lirplgeggk mrlaadfaqm elavaplcrr vsdlgksyrq lrsfrpllfq
      721 tsehiasspa lgevipfsii lqflfgrapp elkspfqrae wsiarysqwl ddhpsekdrl
      781 alirgaleay vqsvrtregk efapvypimv qllqkamstl q
//
LOCUS       XP_053919246             530 aa            linear   VRT 09-MAR-2023
DEFINITION  HMG box-containing protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053919246
VERSION     XP_053919246.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063271.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..530
                     /product="HMG box-containing protein 1 isoform X1"
                     /calculated_mol_wt=58816
     Region          227..351
                     /region_name="AXH"
                     /note="Ataxin-1 and HBP1 module (AXH); pfam08517"
                     /db_xref="CDD:462505"
     Region          451..519
                     /region_name="HMG-box_HBP1"
                     /note="high mobility group (HMG)-box found in HMG
                     box-containing protein 1 (HBP1) and similar proteins;
                     cd21988"
                     /db_xref="CDD:438804"
     Site            order(451..452,454..458,461..462,469,481..482,485,
                     488..489,496,500,503,507,510)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438804"
     CDS             1..530
                     /gene="HBP1"
                     /coded_by="XM_054063271.1:80..1672"
                     /db_xref="GeneID:104056067"
ORIGIN      
        1 matglsdtle hpnmvwevkt nqmpnavqkl llvvdkrpsg mneslellkc nenlpsspgy
       61 ascdehmeld dlpelqavqt dsaspalfql gadvshqecs rpswnqhtsn snsesaysce
      121 ngvnwltela niatspqspl mqcsfynrss pvhiiatsks lhsyarpppg sskndpnfsk
      181 ndldetpvrh eransesesg ifcmsslsdd ddlgwchswp stvwhcflkg srlcfhkgrn
      241 kewqdvedfa rsqscgkeed lavspykgyg sdglklishe esisfgesvl kltfdpgtve
      301 dglltvecrl dhpfyvknkg wssfypsltv vqhgipccem hlgdlclppg hpdainfdds
      361 gvfdtfksyd ftpmdssavy vlssmarqrr aslscggsnn qdaersecst knctstassh
      421 lsssslyska gksqssgtas tvsatspnkc krpmnafmlf akkyrveytq mypgkdnrai
      481 svilgdrwkk mkneerrmyt leakalaeeq krlnpdcwkr krtnsgsqqh
//
LOCUS       XP_053919249             517 aa            linear   VRT 09-MAR-2023
DEFINITION  HMG box-containing protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053919249
VERSION     XP_053919249.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063274.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..517
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..517
                     /product="HMG box-containing protein 1 isoform X2"
                     /calculated_mol_wt=57448
     Region          214..338
                     /region_name="AXH"
                     /note="Ataxin-1 and HBP1 module (AXH); pfam08517"
                     /db_xref="CDD:462505"
     Region          438..506
                     /region_name="HMG-box_HBP1"
                     /note="high mobility group (HMG)-box found in HMG
                     box-containing protein 1 (HBP1) and similar proteins;
                     cd21988"
                     /db_xref="CDD:438804"
     Site            order(438..439,441..445,448..449,456,468..469,472,
                     475..476,483,487,490,494,497)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438804"
     CDS             1..517
                     /gene="HBP1"
                     /coded_by="XM_054063274.1:46..1599"
                     /db_xref="GeneID:104056067"
ORIGIN      
        1 mvwevktnqm pnavqklllv vdkrpsgmne slellkcnen lpsspgyasc dehmelddlp
       61 elqavqtdsa spalfqlgad vshqecsrps wnqhtsnsns esayscengv nwltelania
      121 tspqsplmqc sfynrsspvh iiatskslhs yarpppgssk ndpnfskndl detpvrhera
      181 nsesesgifc msslsddddl gwchswpstv whcflkgsrl cfhkgrnkew qdvedfarsq
      241 scgkeedlav spykgygsdg lklisheesi sfgesvlklt fdpgtvedgl ltvecrldhp
      301 fyvknkgwss fypsltvvqh gipccemhlg dlclppghpd ainfddsgvf dtfksydftp
      361 mdssavyvls smarqrrasl scggsnnqda ersecstknc tstasshlss sslyskagks
      421 qssgtastvs atspnkckrp mnafmlfakk yrveytqmyp gkdnraisvi lgdrwkkmkn
      481 eerrmytlea kalaeeqkrl npdcwkrkrt nsgsqqh
//
LOCUS       XP_053919253             517 aa            linear   VRT 09-MAR-2023
DEFINITION  HMG box-containing protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053919253
VERSION     XP_053919253.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063278.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..517
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..517
                     /product="HMG box-containing protein 1 isoform X2"
                     /calculated_mol_wt=57448
     Region          214..338
                     /region_name="AXH"
                     /note="Ataxin-1 and HBP1 module (AXH); pfam08517"
                     /db_xref="CDD:462505"
     Region          438..506
                     /region_name="HMG-box_HBP1"
                     /note="high mobility group (HMG)-box found in HMG
                     box-containing protein 1 (HBP1) and similar proteins;
                     cd21988"
                     /db_xref="CDD:438804"
     Site            order(438..439,441..445,448..449,456,468..469,472,
                     475..476,483,487,490,494,497)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438804"
     CDS             1..517
                     /gene="HBP1"
                     /coded_by="XM_054063278.1:73..1626"
                     /db_xref="GeneID:104056067"
ORIGIN      
        1 mvwevktnqm pnavqklllv vdkrpsgmne slellkcnen lpsspgyasc dehmelddlp
       61 elqavqtdsa spalfqlgad vshqecsrps wnqhtsnsns esayscengv nwltelania
      121 tspqsplmqc sfynrsspvh iiatskslhs yarpppgssk ndpnfskndl detpvrhera
      181 nsesesgifc msslsddddl gwchswpstv whcflkgsrl cfhkgrnkew qdvedfarsq
      241 scgkeedlav spykgygsdg lklisheesi sfgesvlklt fdpgtvedgl ltvecrldhp
      301 fyvknkgwss fypsltvvqh gipccemhlg dlclppghpd ainfddsgvf dtfksydftp
      361 mdssavyvls smarqrrasl scggsnnqda ersecstknc tstasshlss sslyskagks
      421 qssgtastvs atspnkckrp mnafmlfakk yrveytqmyp gkdnraisvi lgdrwkkmkn
      481 eerrmytlea kalaeeqkrl npdcwkrkrt nsgsqqh
//
LOCUS       XP_053919264             433 aa            linear   VRT 09-MAR-2023
DEFINITION  G-protein coupled receptor 22 [Cuculus canorus].
ACCESSION   XP_053919264
VERSION     XP_053919264.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063289.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..433
                     /product="G-protein coupled receptor 22"
                     /calculated_mol_wt=49038
     Region          44..370
                     /region_name="7tm_classA_rhodopsin-like"
                     /note="rhodopsin receptor-like class A family of the
                     seven-transmembrane G protein-coupled receptor
                     superfamily; cd00637"
                     /db_xref="CDD:410626"
     Region          44..69
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410626"
     Region          77..103
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410626"
     Site            order(99,102..103,115..120,122..123,126,169,171..175,208,
                     211..213,215..217,219..220,326,329..330,332..333,345..346,
                     348..350,353,356..357)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:410626"
     Region          115..145
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410626"
     Region          156..175
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410626"
     Region          208..233
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410626"
     Region          306..335
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410626"
     Region          346..370
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410626"
     CDS             1..433
                     /gene="GPR22"
                     /coded_by="XM_054063289.1:1556..2857"
                     /db_xref="GeneID:104056068"
ORIGIN      
        1 mcfslilevn mqsesnitvr daiddidsnm yqplsyplsf qvsltgflml eivlglgsnl
       61 tvlvlycmks nlinsvsnii tmnlhvldvi icvgciplti villlslesn taliccfhea
      121 cvsfasvsta invfaitldr ydisvkpanr iltmgravil mtsiwiislf sflipfievn
      181 ffslqsastw enktllcvst neyhtelgmy yhllvqipif fftvivmlit yskilqalni
      241 rigtrfttgq kkkarkkkti slttqhettd mshsstgknv vfgvrtsvsv iialrravkr
      301 hrerrerqkr vfrmslliis tfllcwtpis vlnttilclg psdllvklrl cflvmaygtt
      361 ifhpllyaft rqkfqkvlks kmkkrvvsiv eadplpnnav ihnswiepkr nkkitfedne
      421 vrqkclvpqv vtd
//
LOCUS       XP_053919273             433 aa            linear   VRT 09-MAR-2023
DEFINITION  G-protein coupled receptor 22 [Cuculus canorus].
ACCESSION   XP_053919273
VERSION     XP_053919273.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063298.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..433
                     /product="G-protein coupled receptor 22"
                     /calculated_mol_wt=49038
     Region          44..370
                     /region_name="7tm_classA_rhodopsin-like"
                     /note="rhodopsin receptor-like class A family of the
                     seven-transmembrane G protein-coupled receptor
                     superfamily; cd00637"
                     /db_xref="CDD:410626"
     Region          44..69
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410626"
     Region          77..103
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410626"
     Site            order(99,102..103,115..120,122..123,126,169,171..175,208,
                     211..213,215..217,219..220,326,329..330,332..333,345..346,
                     348..350,353,356..357)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:410626"
     Region          115..145
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410626"
     Region          156..175
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410626"
     Region          208..233
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410626"
     Region          306..335
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410626"
     Region          346..370
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410626"
     CDS             1..433
                     /gene="GPR22"
                     /coded_by="XM_054063298.1:746..2047"
                     /db_xref="GeneID:104056068"
ORIGIN      
        1 mcfslilevn mqsesnitvr daiddidsnm yqplsyplsf qvsltgflml eivlglgsnl
       61 tvlvlycmks nlinsvsnii tmnlhvldvi icvgciplti villlslesn taliccfhea
      121 cvsfasvsta invfaitldr ydisvkpanr iltmgravil mtsiwiislf sflipfievn
      181 ffslqsastw enktllcvst neyhtelgmy yhllvqipif fftvivmlit yskilqalni
      241 rigtrfttgq kkkarkkkti slttqhettd mshsstgknv vfgvrtsvsv iialrravkr
      301 hrerrerqkr vfrmslliis tfllcwtpis vlnttilclg psdllvklrl cflvmaygtt
      361 ifhpllyaft rqkfqkvlks kmkkrvvsiv eadplpnnav ihnswiepkr nkkitfedne
      421 vrqkclvpqv vtd
//
LOCUS       XP_053919280             433 aa            linear   VRT 09-MAR-2023
DEFINITION  G-protein coupled receptor 22 [Cuculus canorus].
ACCESSION   XP_053919280
VERSION     XP_053919280.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063305.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..433
                     /product="G-protein coupled receptor 22"
                     /calculated_mol_wt=49038
     Region          44..370
                     /region_name="7tm_classA_rhodopsin-like"
                     /note="rhodopsin receptor-like class A family of the
                     seven-transmembrane G protein-coupled receptor
                     superfamily; cd00637"
                     /db_xref="CDD:410626"
     Region          44..69
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410626"
     Region          77..103
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410626"
     Site            order(99,102..103,115..120,122..123,126,169,171..175,208,
                     211..213,215..217,219..220,326,329..330,332..333,345..346,
                     348..350,353,356..357)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:410626"
     Region          115..145
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410626"
     Region          156..175
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410626"
     Region          208..233
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410626"
     Region          306..335
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410626"
     Region          346..370
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410626"
     CDS             1..433
                     /gene="GPR22"
                     /coded_by="XM_054063305.1:875..2176"
                     /db_xref="GeneID:104056068"
ORIGIN      
        1 mcfslilevn mqsesnitvr daiddidsnm yqplsyplsf qvsltgflml eivlglgsnl
       61 tvlvlycmks nlinsvsnii tmnlhvldvi icvgciplti villlslesn taliccfhea
      121 cvsfasvsta invfaitldr ydisvkpanr iltmgravil mtsiwiislf sflipfievn
      181 ffslqsastw enktllcvst neyhtelgmy yhllvqipif fftvivmlit yskilqalni
      241 rigtrfttgq kkkarkkkti slttqhettd mshsstgknv vfgvrtsvsv iialrravkr
      301 hrerrerqkr vfrmslliis tfllcwtpis vlnttilclg psdllvklrl cflvmaygtt
      361 ifhpllyaft rqkfqkvlks kmkkrvvsiv eadplpnnav ihnswiepkr nkkitfedne
      421 vrqkclvpqv vtd
//
LOCUS       XP_009555572             433 aa            linear   VRT 09-MAR-2023
DEFINITION  G-protein coupled receptor 22 [Cuculus canorus].
ACCESSION   XP_009555572
VERSION     XP_009555572.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557277.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..433
                     /product="G-protein coupled receptor 22"
                     /calculated_mol_wt=49038
     Region          44..370
                     /region_name="7tm_classA_rhodopsin-like"
                     /note="rhodopsin receptor-like class A family of the
                     seven-transmembrane G protein-coupled receptor
                     superfamily; cd00637"
                     /db_xref="CDD:410626"
     Region          44..69
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410626"
     Region          77..103
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410626"
     Site            order(99,102..103,115..120,122..123,126,169,171..175,208,
                     211..213,215..217,219..220,326,329..330,332..333,345..346,
                     348..350,353,356..357)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:410626"
     Region          115..145
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410626"
     Region          156..175
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410626"
     Region          208..233
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410626"
     Region          306..335
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410626"
     Region          346..370
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410626"
     CDS             1..433
                     /gene="GPR22"
                     /coded_by="XM_009557277.2:485..1786"
                     /db_xref="GeneID:104056068"
ORIGIN      
        1 mcfslilevn mqsesnitvr daiddidsnm yqplsyplsf qvsltgflml eivlglgsnl
       61 tvlvlycmks nlinsvsnii tmnlhvldvi icvgciplti villlslesn taliccfhea
      121 cvsfasvsta invfaitldr ydisvkpanr iltmgravil mtsiwiislf sflipfievn
      181 ffslqsastw enktllcvst neyhtelgmy yhllvqipif fftvivmlit yskilqalni
      241 rigtrfttgq kkkarkkkti slttqhettd mshsstgknv vfgvrtsvsv iialrravkr
      301 hrerrerqkr vfrmslliis tfllcwtpis vlnttilclg psdllvklrl cflvmaygtt
      361 ifhpllyaft rqkfqkvlks kmkkrvvsiv eadplpnnav ihnswiepkr nkkitfedne
      421 vrqkclvpqv vtd
//
LOCUS       XP_009555569             315 aa            linear   VRT 09-MAR-2023
DEFINITION  tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like isoform X1
            [Cuculus canorus].
ACCESSION   XP_009555569
VERSION     XP_009555569.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557274.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..315
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..315
                     /product="tRNA-dihydrouridine(20a/20b) synthase
                     [NAD(P)+]-like isoform X1"
                     /calculated_mol_wt=35186
     Region          26..255
                     /region_name="DUS_like_FMN"
                     /note="Dihydrouridine synthase-like (DUS-like) FMN-binding
                     domain. Members of this family catalyze the reduction of
                     the 5,6-double bond of a uridine residue on tRNA.
                     Dihydrouridine modification of tRNA is widely observed in
                     prokaryotes and eukaryotes, and also...; cd02801"
                     /db_xref="CDD:239200"
     Site            order(30..32,56,85,111,156,184,214,216,238..239)
                     /site_type="other"
                     /note="FMN binding site [chemical binding]"
                     /db_xref="CDD:239200"
     Site            order(85,114..115,156,158,183..184,186..187,215..216,239)
                     /site_type="active"
                     /db_xref="CDD:239200"
     Site            order(114,158,184,186)
                     /site_type="active"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:239200"
     Site            order(115,156,183,187,215..216)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:239200"
     CDS             1..315
                     /gene="DUS4L"
                     /coded_by="XM_009557274.2:166..1113"
                     /db_xref="GeneID:104056090"
ORIGIN      
        1 migdiaetkp cqpkvpmdlf hsgqvvkica pmvrysklaf rtlvrkykcd lcytpmivaa
       61 dfvrsakard sefttnkgdh plivqfaake aqvlcdaari iapfadgidl ncgcpqrwam
      121 aegygaclin kpeliqdmvr hvrnqidnpr fsvsvkirih edlkrtvdlc qkaeatgvsw
      181 itvhgrsvee rhqpvhydai kiikqslsip vvangdiktl kdaenvhdlt gadgvmvarg
      241 llanpamfag yeetplkciq dwvdialehg tpftcfhhhl mymmeritsk qekkvfnils
      301 stsavldyln drygv
//
LOCUS       XP_053919298             243 aa            linear   VRT 09-MAR-2023
DEFINITION  tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like isoform X2
            [Cuculus canorus].
ACCESSION   XP_053919298
VERSION     XP_053919298.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063323.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..243
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..243
                     /product="tRNA-dihydrouridine(20a/20b) synthase
                     [NAD(P)+]-like isoform X2"
                     /calculated_mol_wt=27874
     Region          1..137
                     /region_name="Bap31"
                     /note="Bap31/Bap29 transmembrane region; pfam05529"
                     /db_xref="CDD:461673"
     Region          183..243
                     /region_name="Bap31_Bap29_C"
                     /note="Bap31/Bap29 cytoplasmic coiled-coil domain;
                     pfam18035"
                     /db_xref="CDD:465623"
     CDS             1..243
                     /gene="DUS4L"
                     /coded_by="XM_054063323.1:120..851"
                     /db_xref="GeneID:104056090"
ORIGIN      
        1 mtfqwtavaa flygeigvil vlclpfispl rwqkiftipl wsklavfwnk mflttiilli
       61 vlfldavrev rkysavhvse ktvnintnaf dhiqmklfrs qrnlylsgfs lflwlvlrrt
      121 vtlltqlakq mashaaletq vintteaakk ymaeneklqe alsqqgsgkk kesaevtdek
      181 lkkevedlka elqktstalh kanndvtavk kqseglkrey drlmkeyeql qeslneaedk
      241 kdl
//
LOCUS       XP_053919307             243 aa            linear   VRT 09-MAR-2023
DEFINITION  tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like isoform X2
            [Cuculus canorus].
ACCESSION   XP_053919307
VERSION     XP_053919307.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063332.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..243
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..243
                     /product="tRNA-dihydrouridine(20a/20b) synthase
                     [NAD(P)+]-like isoform X2"
                     /calculated_mol_wt=27874
     Region          1..137
                     /region_name="Bap31"
                     /note="Bap31/Bap29 transmembrane region; pfam05529"
                     /db_xref="CDD:461673"
     Region          183..243
                     /region_name="Bap31_Bap29_C"
                     /note="Bap31/Bap29 cytoplasmic coiled-coil domain;
                     pfam18035"
                     /db_xref="CDD:465623"
     CDS             1..243
                     /gene="DUS4L"
                     /coded_by="XM_054063332.1:137..868"
                     /db_xref="GeneID:104056090"
ORIGIN      
        1 mtfqwtavaa flygeigvil vlclpfispl rwqkiftipl wsklavfwnk mflttiilli
       61 vlfldavrev rkysavhvse ktvnintnaf dhiqmklfrs qrnlylsgfs lflwlvlrrt
      121 vtlltqlakq mashaaletq vintteaakk ymaeneklqe alsqqgsgkk kesaevtdek
      181 lkkevedlka elqktstalh kanndvtavk kqseglkrey drlmkeyeql qeslneaedk
      241 kdl
//
LOCUS       XP_053919314             243 aa            linear   VRT 09-MAR-2023
DEFINITION  tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like isoform X2
            [Cuculus canorus].
ACCESSION   XP_053919314
VERSION     XP_053919314.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063339.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..243
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..243
                     /product="tRNA-dihydrouridine(20a/20b) synthase
                     [NAD(P)+]-like isoform X2"
                     /calculated_mol_wt=27874
     Region          1..137
                     /region_name="Bap31"
                     /note="Bap31/Bap29 transmembrane region; pfam05529"
                     /db_xref="CDD:461673"
     Region          183..243
                     /region_name="Bap31_Bap29_C"
                     /note="Bap31/Bap29 cytoplasmic coiled-coil domain;
                     pfam18035"
                     /db_xref="CDD:465623"
     CDS             1..243
                     /gene="DUS4L"
                     /coded_by="XM_054063339.1:118..849"
                     /db_xref="GeneID:104056090"
ORIGIN      
        1 mtfqwtavaa flygeigvil vlclpfispl rwqkiftipl wsklavfwnk mflttiilli
       61 vlfldavrev rkysavhvse ktvnintnaf dhiqmklfrs qrnlylsgfs lflwlvlrrt
      121 vtlltqlakq mashaaletq vintteaakk ymaeneklqe alsqqgsgkk kesaevtdek
      181 lkkevedlka elqktstalh kanndvtavk kqseglkrey drlmkeyeql qeslneaedk
      241 kdl
//
LOCUS       XP_053919324             487 aa            linear   VRT 09-MAR-2023
DEFINITION  tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like isoform X3
            [Cuculus canorus].
ACCESSION   XP_053919324
VERSION     XP_053919324.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063349.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..487
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..487
                     /product="tRNA-dihydrouridine(20a/20b) synthase
                     [NAD(P)+]-like isoform X3"
                     /calculated_mol_wt=54970
     Region          26..234
                     /region_name="DUS_like_FMN"
                     /note="Dihydrouridine synthase-like (DUS-like) FMN-binding
                     domain. Members of this family catalyze the reduction of
                     the 5,6-double bond of a uridine residue on tRNA.
                     Dihydrouridine modification of tRNA is widely observed in
                     prokaryotes and eukaryotes, and also...; cd02801"
                     /db_xref="CDD:239200"
     Site            order(30..32,56,85,111,156,184,214,216)
                     /site_type="other"
                     /note="FMN binding site [chemical binding]"
                     /db_xref="CDD:239200"
     Site            order(85,114..115,156,158,183..184,186..187,215..216)
                     /site_type="active"
                     /db_xref="CDD:239200"
     Site            order(114,158,184,186)
                     /site_type="active"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:239200"
     Site            order(115,156,183,187,215..216)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:239200"
     Region          245..381
                     /region_name="Bap31"
                     /note="Bap31/Bap29 transmembrane region; pfam05529"
                     /db_xref="CDD:461673"
     Region          427..487
                     /region_name="Bap31_Bap29_C"
                     /note="Bap31/Bap29 cytoplasmic coiled-coil domain;
                     pfam18035"
                     /db_xref="CDD:465623"
     CDS             1..487
                     /gene="DUS4L"
                     /coded_by="XM_054063349.1:166..1629"
                     /db_xref="GeneID:104056090"
ORIGIN      
        1 migdiaetkp cqpkvpmdlf hsgqvvkica pmvrysklaf rtlvrkykcd lcytpmivaa
       61 dfvrsakard sefttnkgdh plivqfaake aqvlcdaari iapfadgidl ncgcpqrwam
      121 aegygaclin kpeliqdmvr hvrnqidnpr fsvsvkirih edlkrtvdlc qkaeatgvsw
      181 itvhgrsvee rhqpvhydai kiikqslsip vvangdiktl kdaenvhdlt gadgkikhtl
      241 pagkmtfqwt avaaflygei gvilvlclpf isplrwqkif tiplwsklav fwnkmfltti
      301 illivlflda vrevrkysav hvsektvnin tnafdhiqmk lfrsqrnlyl sgfslflwlv
      361 lrrtvtlltq lakqmashaa letqvintte aakkymaene klqealsqqg sgkkkesaev
      421 tdeklkkeve dlkaelqkts talhkanndv tavkkqsegl kreydrlmke yeqlqeslne
      481 aedkkdl
//
LOCUS       XP_053919336            1856 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X1 [Cuculus canorus].
ACCESSION   XP_053919336
VERSION     XP_053919336.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063361.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1856
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1856
                     /product="neuronal cell adhesion molecule isoform X1"
                     /calculated_mol_wt=206470
     Region          41..135
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          41..45
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          50..54
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          59..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          72..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          80..82
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          89..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          125..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          144..233
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          195..199
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          210..215
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          271..353
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          283..287
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          296..300
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          318..322
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          332..337
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          345..348
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          357..445
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          373..377
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          386..390
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          410..414
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          424..429
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          437..440
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          449..537
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          467..471
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          480..484
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          503..507
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          517..522
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          530..533
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          543..628
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          558..562
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409359"
     Region          573..578
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409359"
     Region          595..598
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409359"
     Region          602..1070
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          608..613
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409359"
     Region          621..624
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409359"
     Region          642..732
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(642,708,723)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(724..725,727..728)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1081..1153
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          1208..>1244
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     Region          1574..1783
                     /region_name="LAP2alpha"
                     /note="Lamina-associated polypeptide 2 alpha; pfam11560"
                     /db_xref="CDD:371604"
     CDS             1..1856
                     /gene="NRCAM"
                     /coded_by="XM_054063361.1:230..5800"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld sklleellqp ptitqqspkd yivdpreniv
       61 iqceakgkpp psfswtrngt hfdidkdalv tmkpnsgtlv inimnggkae ayegvyqcta
      121 rnergaaisn nivirpsrsp lwtkeklepn hvregdslvl hcrppvglpp piifwmdnaf
      181 qklpqservs qglngdlyfs nvqpedsred yicyarfnht qtiqqkqpis vkvfsmdsln
      241 dtiaanlsdt diygaksvte rqpvlltptg ststkvelrg nvllleciaa glptpvirwi
      301 keggelpanr tffenfkktl kiidvseads gnykciarnt lgsvhhvisv tvkaapywit
      361 aprnlvlspg edgtlicran gnpkpniswl angvpiaiap edpsrkvdgd tiifshvqer
      421 ssavyqcnas neygyllana fvnvlaeppr iltpadklyq viadspalld cayfgspkpe
      481 iewfkgvkgs ilrgseyifh yngtleipva qkdssgtytc varnelgkiq nevqlevkdp
      541 tmiikqpeyk viqrygqvsf eciikhdstl lptviwlkdn dvlpdderfl vgkdnltimn
      601 vtdkddgtyt cvvnttldsv sasavltvva apptpaiiya rpnppfdlel tgqlersiel
      661 swipgdenns pitnfvieye dglhepgvwh hqtevpgtqt tvhlklspyv nysfrviavn
      721 eigrsqpsep seqyltksas pdenpsnvqg igsepdnlvi twesltdfqs ngpglqykvs
      781 wrqkdvddew tsvivanvsk yivsgtptfv pyeikvqaln dlgyapepse vighsgedlp
      841 mvapgnvqvh vinstlakvh wdpvplksvr ghlqgykvyy wkvqslsrrs rrhveknilt
      901 frgnktfgml pglepyssyk lnvrvvngkg egpaspdkvf ktpegvpssp sflkitnptl
      961 dsltlewgsp ihpngvltsy ilkfqpinnt helgplveir ipanesslil knlnystryk
     1021 fyfnaqtsvg sgsqiteeav timdeagilr pavgagkgys etlfatspvm htvrptfykv
     1081 qplyprirni ttaaaetyan isweyegpdh tnfyveygva gskedwkkei vngsrsffvl
     1141 kgltpgtayk vrvgaeglsg frssedvfet gpamasrqvd iatqgwfigl mcavallili
     1201 llivcfirrn kggkypvkek edahadpeiq pmkeddgtfg eyrsisawtg kkldkekkrk
     1261 gscasssead pvftkpksvr sdrssffrrs gdqysstrse tsytrrkarq sseltrvssv
     1321 saslcqekkk sdewkyrrgs rhhaseqqim gseegsdsqa gqpspfqqpl scnsihgsmk
     1381 kqhslqhwfs qspdhssdse dtqssyhrkv rpstttcfse seknslmksv ilpelatvlk
     1441 naltaarqsi tsvaqarshs vkhprgpvte ipvvpleatg sssqtfesdh mdsskgwtss
     1501 gkekhkadka levesspede dvssespted qeegpdpvrk fdmenqnflf khikrvlmlk
     1561 ysksecasee lpipseegkv dnalpihsav edlvcriwgn peakheapav lhklyplpvd
     1621 kaalwgnlpk vdralvtdds vlsvpanrdv fpkdptdrkv eeaikrsfkl vaaqlgvsiy
     1681 ctytskalli wleeerarck kkwvssgamq rkrrlckiaa nfihdaaeds lrltvknmac
     1741 ltvawraiwl rpwtssldlt ckllslpytg gklfgdslvq imkdfserrc slrqlkkkss
     1801 vrsssfcyph kclssfrspp kfkgrkgkyk ssqlfhakye rtslfqrdtk ssrgtf
//
LOCUS       XP_053919342            1850 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X2 [Cuculus canorus].
ACCESSION   XP_053919342
VERSION     XP_053919342.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063367.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1850
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1850
                     /product="neuronal cell adhesion molecule isoform X2"
                     /calculated_mol_wt=205770
     Region          35..129
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          35..39
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          44..48
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          53..60
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          66..71
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          74..76
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          83..86
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          108..116
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          119..129
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          138..227
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          152..156
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          166..170
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          189..193
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          204..209
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          220..223
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          265..347
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          277..281
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          290..294
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          312..316
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          326..331
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          339..342
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          351..439
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          367..371
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          380..384
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          404..408
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          418..423
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          431..434
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          443..531
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          461..465
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          474..478
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          497..501
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          511..516
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          524..527
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          537..622
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          552..556
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409359"
     Region          567..572
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409359"
     Region          589..592
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409359"
     Region          596..1064
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          602..607
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409359"
     Region          615..618
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409359"
     Region          636..726
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(636,702,717)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(718..719,721..722)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1075..1147
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          1202..>1238
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     Region          1568..1777
                     /region_name="LAP2alpha"
                     /note="Lamina-associated polypeptide 2 alpha; pfam11560"
                     /db_xref="CDD:371604"
     CDS             1..1850
                     /gene="NRCAM"
                     /coded_by="XM_054063367.1:333..5885"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld llqpptitqq spkdyivdpr eniviqceak
       61 gkpppsfswt rngthfdidk dalvtmkpns gtlvinimng gkaeayegvy qctarnerga
      121 aisnnivirp srsplwtkek lepnhvregd slvlhcrppv glpppiifwm dnafqklpqs
      181 ervsqglngd lyfsnvqped sredyicyar fnhtqtiqqk qpisvkvfsm dslndtiaan
      241 lsdtdiygak svterqpvll tptgststkv elrgnvllle ciaaglptpv irwikeggel
      301 panrtffenf kktlkiidvs eadsgnykci arntlgsvhh visvtvkaap ywitaprnlv
      361 lspgedgtli crangnpkpn iswlangvpi aiapedpsrk vdgdtiifsh vqerssavyq
      421 cnasneygyl lanafvnvla eppriltpad klyqviadsp alldcayfgs pkpeiewfkg
      481 vkgsilrgse yifhyngtle ipvaqkdssg tytcvarnel gkiqnevqle vkdptmiikq
      541 peykviqryg qvsfeciikh dstllptviw lkdndvlpdd erflvgkdnl timnvtdkdd
      601 gtytcvvntt ldsvsasavl tvvaapptpa iiyarpnppf dleltgqler sielswipgd
      661 ennspitnfv ieyedglhep gvwhhqtevp gtqttvhlkl spyvnysfrv iavneigrsq
      721 psepseqylt ksaspdenps nvqgigsepd nlvitweslt dfqsngpglq ykvswrqkdv
      781 ddewtsviva nvskyivsgt ptfvpyeikv qalndlgyap epsevighsg edlpmvapgn
      841 vqvhvinstl akvhwdpvpl ksvrghlqgy kvyywkvqsl srrsrrhvek niltfrgnkt
      901 fgmlpglepy ssyklnvrvv ngkgegpasp dkvfktpegv psspsflkit nptldsltle
      961 wgspihpngv ltsyilkfqp innthelgpl veiripanes slilknlnys trykfyfnaq
     1021 tsvgsgsqit eeavtimdea gilrpavgag kgysetlfat spvmhtvrpt fykvqplypr
     1081 irnittaaae tyanisweye gpdhtnfyve ygvagskedw kkeivngsrs ffvlkgltpg
     1141 taykvrvgae glsgfrssed vfetgpamas rqvdiatqgw figlmcaval lilillivcf
     1201 irrnkggkyp vkekedahad peiqpmkedd gtfgeyrsis awtgkkldke kkrkgscass
     1261 seadpvftkp ksvrsdrssf frrsgdqyss trsetsytrr karqsseltr vssvsaslcq
     1321 ekkksdewky rrgsrhhase qqimgseegs dsqagqpspf qqplscnsih gsmkkqhslq
     1381 hwfsqspdhs sdsedtqssy hrkvrpsttt cfseseknsl mksvilpela tvlknaltaa
     1441 rqsitsvaqa rshsvkhprg pvteipvvpl eatgsssqtf esdhmdsskg wtssgkekhk
     1501 adkalevess pededvsses ptedqeegpd pvrkfdmenq nflfkhikrv lmlkysksec
     1561 aseelpipse egkvdnalpi hsavedlvcr iwgnpeakhe apavlhklyp lpvdkaalwg
     1621 nlpkvdralv tddsvlsvpa nrdvfpkdpt drkveeaikr sfklvaaqlg vsiyctytsk
     1681 alliwleeer arckkkwvss gamqrkrrlc kiaanfihda aedslrltvk nmacltvawr
     1741 aiwlrpwtss ldltckllsl pytggklfgd slvqimkdfs errcslrqlk kkssvrsssf
     1801 cyphkclssf rsppkfkgrk gkykssqlfh akyertslfq rdtkssrgtf
//
LOCUS       XP_053919348            1846 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X3 [Cuculus canorus].
ACCESSION   XP_053919348
VERSION     XP_053919348.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063373.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1846
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1846
                     /product="neuronal cell adhesion molecule isoform X3"
                     /calculated_mol_wt=205475
     Region          41..135
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          41..45
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          50..54
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          59..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          72..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          80..82
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          89..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          125..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          144..233
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          195..199
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          210..215
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          271..353
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          283..287
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          296..300
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          318..322
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          332..337
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          345..348
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          357..445
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          373..377
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          386..390
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          410..414
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          424..429
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          437..440
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          449..537
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          467..471
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          480..484
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          503..507
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          517..522
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          530..533
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          543..628
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          558..562
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          573..577
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          595..598
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          608..613
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          621..624
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          632..722
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(632,698,713)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          687..1144
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(714..715,717..718)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1198..>1234
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     Region          1564..1773
                     /region_name="LAP2alpha"
                     /note="Lamina-associated polypeptide 2 alpha; pfam11560"
                     /db_xref="CDD:371604"
     CDS             1..1846
                     /gene="NRCAM"
                     /coded_by="XM_054063373.1:334..5874"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld sklleellqp ptitqqspkd yivdpreniv
       61 iqceakgkpp psfswtrngt hfdidkdalv tmkpnsgtlv inimnggkae ayegvyqcta
      121 rnergaaisn nivirpsrsp lwtkeklepn hvregdslvl hcrppvglpp piifwmdnaf
      181 qklpqservs qglngdlyfs nvqpedsred yicyarfnht qtiqqkqpis vkvfsmdsln
      241 dtiaanlsdt diygaksvte rqpvlltptg ststkvelrg nvllleciaa glptpvirwi
      301 keggelpanr tffenfkktl kiidvseads gnykciarnt lgsvhhvisv tvkaapywit
      361 aprnlvlspg edgtlicran gnpkpniswl angvpiaiap edpsrkvdgd tiifshvqer
      421 ssavyqcnas neygyllana fvnvlaeppr iltpadklyq viadspalld cayfgspkpe
      481 iewfkgvkgs ilrgseyifh yngtleipva qkdssgtytc varnelgkiq nevqlevkdp
      541 tmiikqpeyk viqrygqvsf eciikhdstl lptviwlkdn dvlpdderfl vgkdnltimn
      601 vtdkddgtyt cvvnttldsv sasavltvva rpnppfdlel tgqlersiel swipgdenns
      661 pitnfvieye dglhepgvwh hqtevpgtqt tvhlklspyv nysfrviavn eigrsqpsep
      721 seqyltksas pdenpsnvqg igsepdnlvi twesltdfqs ngpglqykvs wrqkdvddew
      781 tsvivanvsk yivsgtptfv pyeikvqaln dlgyapepse vighsgedlp mvapgnvqvh
      841 vinstlakvh wdpvplksvr ghlqgykvyy wkvqslsrrs rrhveknilt frgnktfgml
      901 pglepyssyk lnvrvvngkg egpaspdkvf ktpegvpssp sflkitnptl dsltlewgsp
      961 ihpngvltsy ilkfqpinnt helgplveir ipanesslil knlnystryk fyfnaqtsvg
     1021 sgsqiteeav timdeagilr pavgagkgys etlfatspvm htvrptfykv qplyprirni
     1081 ttaaaetyan isweyegpdh tnfyveygva gskedwkkei vngsrsffvl kgltpgtayk
     1141 vrvgaeglsg frssedvfet gpamasrqvd iatqgwfigl mcavallili llivcfirrn
     1201 kggkypvkek edahadpeiq pmkeddgtfg eyrsisawtg kkldkekkrk gscasssead
     1261 pvftkpksvr sdrssffrrs gdqysstrse tsytrrkarq sseltrvssv saslcqekkk
     1321 sdewkyrrgs rhhaseqqim gseegsdsqa gqpspfqqpl scnsihgsmk kqhslqhwfs
     1381 qspdhssdse dtqssyhrkv rpstttcfse seknslmksv ilpelatvlk naltaarqsi
     1441 tsvaqarshs vkhprgpvte ipvvpleatg sssqtfesdh mdsskgwtss gkekhkadka
     1501 levesspede dvssespted qeegpdpvrk fdmenqnflf khikrvlmlk ysksecasee
     1561 lpipseegkv dnalpihsav edlvcriwgn peakheapav lhklyplpvd kaalwgnlpk
     1621 vdralvtdds vlsvpanrdv fpkdptdrkv eeaikrsfkl vaaqlgvsiy ctytskalli
     1681 wleeerarck kkwvssgamq rkrrlckiaa nfihdaaeds lrltvknmac ltvawraiwl
     1741 rpwtssldlt ckllslpytg gklfgdslvq imkdfserrc slrqlkkkss vrsssfcyph
     1801 kclssfrspp kfkgrkgkyk ssqlfhakye rtslfqrdtk ssrgtf
//
LOCUS       XP_053919356            1844 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X4 [Cuculus canorus].
ACCESSION   XP_053919356
VERSION     XP_053919356.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063381.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1844
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1844
                     /product="neuronal cell adhesion molecule isoform X4"
                     /calculated_mol_wt=205379
     Region          41..135
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          41..45
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          50..54
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          59..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          72..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          80..82
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          89..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          125..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          144..233
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          195..199
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          210..215
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          271..353
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          283..287
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          296..300
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          318..322
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          332..337
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          345..348
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          357..445
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          373..377
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          386..390
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          410..414
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          424..429
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          437..440
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          449..537
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          467..471
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          480..484
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          503..507
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          517..522
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          530..533
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          543..628
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          558..562
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409359"
     Region          573..578
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409359"
     Region          595..598
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409359"
     Region          602..1143
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          608..613
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409359"
     Region          621..624
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409359"
     Region          642..732
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(642,708,723)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(724..725,727..728)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1196..>1232
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     Region          1562..1771
                     /region_name="LAP2alpha"
                     /note="Lamina-associated polypeptide 2 alpha; pfam11560"
                     /db_xref="CDD:371604"
     CDS             1..1844
                     /gene="NRCAM"
                     /coded_by="XM_054063381.1:333..5867"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld sklleellqp ptitqqspkd yivdpreniv
       61 iqceakgkpp psfswtrngt hfdidkdalv tmkpnsgtlv inimnggkae ayegvyqcta
      121 rnergaaisn nivirpsrsp lwtkeklepn hvregdslvl hcrppvglpp piifwmdnaf
      181 qklpqservs qglngdlyfs nvqpedsred yicyarfnht qtiqqkqpis vkvfsmdsln
      241 dtiaanlsdt diygaksvte rqpvlltptg ststkvelrg nvllleciaa glptpvirwi
      301 keggelpanr tffenfkktl kiidvseads gnykciarnt lgsvhhvisv tvkaapywit
      361 aprnlvlspg edgtlicran gnpkpniswl angvpiaiap edpsrkvdgd tiifshvqer
      421 ssavyqcnas neygyllana fvnvlaeppr iltpadklyq viadspalld cayfgspkpe
      481 iewfkgvkgs ilrgseyifh yngtleipva qkdssgtytc varnelgkiq nevqlevkdp
      541 tmiikqpeyk viqrygqvsf eciikhdstl lptviwlkdn dvlpdderfl vgkdnltimn
      601 vtdkddgtyt cvvnttldsv sasavltvva apptpaiiya rpnppfdlel tgqlersiel
      661 swipgdenns pitnfvieye dglhepgvwh hqtevpgtqt tvhlklspyv nysfrviavn
      721 eigrsqpsep seqyltksas pdenpsnvqg igsepdnlvi twesltdfqs ngpglqykvs
      781 wrqkdvddew tsvivanvsk yivsgtptfv pyeikvqaln dlgyapepse vighsgedlp
      841 mvapgnvqvh vinstlakvh wdpvplksvr ghlqgykvyy wkvqslsrrs rrhveknilt
      901 frgnktfgml pglepyssyk lnvrvvngkg egpaspdkvf ktpegvpssp sflkitnptl
      961 dsltlewgsp ihpngvltsy ilkfqpinnt helgplveir ipanesslil knlnystryk
     1021 fyfnaqtsvg sgsqiteeav timdegyset lfatspvmht vrptfykvqp lyprirnitt
     1081 aaaetyanis weyegpdhtn fyveygvags kedwkkeivn gsrsffvlkg ltpgtaykvr
     1141 vgaeglsgfr ssedvfetgp amasrqvdia tqgwfiglmc avallilill ivcfirrnkg
     1201 gkypvkeked ahadpeiqpm keddgtfgey rsisawtgkk ldkekkrkgs cassseadpv
     1261 ftkpksvrsd rssffrrsgd qysstrsets ytrrkarqss eltrvssvsa slcqekkksd
     1321 ewkyrrgsrh haseqqimgs eegsdsqagq pspfqqplsc nsihgsmkkq hslqhwfsqs
     1381 pdhssdsedt qssyhrkvrp stttcfsese knslmksvil pelatvlkna ltaarqsits
     1441 vaqarshsvk hprgpvteip vvpleatgss sqtfesdhmd sskgwtssgk ekhkadkale
     1501 vesspededv ssesptedqe egpdpvrkfd menqnflfkh ikrvlmlkys ksecaseelp
     1561 ipseegkvdn alpihsaved lvcriwgnpe akheapavlh klyplpvdka alwgnlpkvd
     1621 ralvtddsvl svpanrdvfp kdptdrkvee aikrsfklva aqlgvsiyct ytskalliwl
     1681 eeerarckkk wvssgamqrk rrlckiaanf ihdaaedslr ltvknmaclt vawraiwlrp
     1741 wtssldltck llslpytggk lfgdslvqim kdfserrcsl rqlkkkssvr sssfcyphkc
     1801 lssfrsppkf kgrkgkykss qlfhakyert slfqrdtkss rgtf
//
LOCUS       XP_053919364            1837 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X5 [Cuculus canorus].
ACCESSION   XP_053919364
VERSION     XP_053919364.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063389.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1837
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1837
                     /product="neuronal cell adhesion molecule isoform X5"
                     /calculated_mol_wt=204489
     Region          41..135
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          41..45
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          50..54
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          59..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          72..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          80..82
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          89..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          125..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          144..233
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          195..199
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          210..215
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          252..334
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          264..268
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          277..281
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          299..303
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          313..318
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          326..329
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          338..426
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          354..358
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          367..371
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          391..395
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          405..410
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          418..421
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          430..518
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          448..452
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          461..465
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          484..488
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          498..503
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          511..514
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          524..609
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          539..543
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409359"
     Region          554..559
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409359"
     Region          576..579
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409359"
     Region          583..1051
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          589..594
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409359"
     Region          602..605
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409359"
     Region          623..713
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(623,689,704)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(705..706,708..709)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1062..1134
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          1189..>1225
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     Region          1555..1764
                     /region_name="LAP2alpha"
                     /note="Lamina-associated polypeptide 2 alpha; pfam11560"
                     /db_xref="CDD:371604"
     CDS             1..1837
                     /gene="NRCAM"
                     /coded_by="XM_054063389.1:333..5846"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld sklleellqp ptitqqspkd yivdpreniv
       61 iqceakgkpp psfswtrngt hfdidkdalv tmkpnsgtlv inimnggkae ayegvyqcta
      121 rnergaaisn nivirpsrsp lwtkeklepn hvregdslvl hcrppvglpp piifwmdnaf
      181 qklpqservs qglngdlyfs nvqpedsred yicyarfnht qtiqqkqpis vkvfstksvt
      241 erqpvlltpt gststkvelr gnvlllecia aglptpvirw ikeggelpan rtffenfkkt
      301 lkiidvsead sgnykciarn tlgsvhhvis vtvkaapywi taprnlvlsp gedgtlicra
      361 ngnpkpnisw langvpiaia pedpsrkvdg dtiifshvqe rssavyqcna sneygyllan
      421 afvnvlaepp riltpadkly qviadspall dcayfgspkp eiewfkgvkg silrgseyif
      481 hyngtleipv aqkdssgtyt cvarnelgki qnevqlevkd ptmiikqpey kviqrygqvs
      541 feciikhdst llptviwlkd ndvlpdderf lvgkdnltim nvtdkddgty tcvvnttlds
      601 vsasavltvv aapptpaiiy arpnppfdle ltgqlersie lswipgdenn spitnfviey
      661 edglhepgvw hhqtevpgtq ttvhlklspy vnysfrviav neigrsqpse pseqyltksa
      721 spdenpsnvq gigsepdnlv itwesltdfq sngpglqykv swrqkdvdde wtsvivanvs
      781 kyivsgtptf vpyeikvqal ndlgyapeps evighsgedl pmvapgnvqv hvinstlakv
      841 hwdpvplksv rghlqgykvy ywkvqslsrr srrhveknil tfrgnktfgm lpglepyssy
      901 klnvrvvngk gegpaspdkv fktpegvpss psflkitnpt ldsltlewgs pihpngvlts
      961 yilkfqpinn thelgplvei ripanessli lknlnystry kfyfnaqtsv gsgsqiteea
     1021 vtimdeagil rpavgagkgy setlfatspv mhtvrptfyk vqplyprirn ittaaaetya
     1081 nisweyegpd htnfyveygv agskedwkke ivngsrsffv lkgltpgtay kvrvgaegls
     1141 gfrssedvfe tgpamasrqv diatqgwfig lmcavallil illivcfirr nkggkypvke
     1201 kedahadpei qpmkeddgtf geyrsisawt gkkldkekkr kgscasssea dpvftkpksv
     1261 rsdrssffrr sgdqysstrs etsytrrkar qsseltrvss vsaslcqekk ksdewkyrrg
     1321 srhhaseqqi mgseegsdsq agqpspfqqp lscnsihgsm kkqhslqhwf sqspdhssds
     1381 edtqssyhrk vrpstttcfs eseknslmks vilpelatvl knaltaarqs itsvaqarsh
     1441 svkhprgpvt eipvvpleat gsssqtfesd hmdsskgwts sgkekhkadk alevessped
     1501 edvssespte dqeegpdpvr kfdmenqnfl fkhikrvlml kysksecase elpipseegk
     1561 vdnalpihsa vedlvcriwg npeakheapa vlhklyplpv dkaalwgnlp kvdralvtdd
     1621 svlsvpanrd vfpkdptdrk veeaikrsfk lvaaqlgvsi yctytskall iwleeerarc
     1681 kkkwvssgam qrkrrlckia anfihdaaed slrltvknma cltvawraiw lrpwtssldl
     1741 tckllslpyt ggklfgdslv qimkdfserr cslrqlkkks svrsssfcyp hkclssfrsp
     1801 pkfkgrkgky kssqlfhaky ertslfqrdt kssrgtf
//
LOCUS       XP_053919373            1834 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X6 [Cuculus canorus].
ACCESSION   XP_053919373
VERSION     XP_053919373.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063398.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1834
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1834
                     /product="neuronal cell adhesion molecule isoform X6"
                     /calculated_mol_wt=203955
     Region          41..135
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          41..45
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          50..54
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          59..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          72..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          80..82
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          89..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          125..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          144..233
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          195..199
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          210..215
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          271..353
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          283..287
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          296..300
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          318..322
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          332..337
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          345..348
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          357..445
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          373..377
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          386..390
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          410..414
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          424..429
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          437..440
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          449..537
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          467..471
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          480..484
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          503..507
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          517..522
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          530..533
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          543..628
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          558..562
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409359"
     Region          573..578
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409359"
     Region          595..598
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409359"
     Region          602..1133
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          608..613
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409359"
     Region          621..624
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409359"
     Region          642..732
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(642,708,723)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(724..725,727..728)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1186..>1222
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     Region          1552..1761
                     /region_name="LAP2alpha"
                     /note="Lamina-associated polypeptide 2 alpha; pfam11560"
                     /db_xref="CDD:371604"
     CDS             1..1834
                     /gene="NRCAM"
                     /coded_by="XM_054063398.1:333..5837"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld sklleellqp ptitqqspkd yivdpreniv
       61 iqceakgkpp psfswtrngt hfdidkdalv tmkpnsgtlv inimnggkae ayegvyqcta
      121 rnergaaisn nivirpsrsp lwtkeklepn hvregdslvl hcrppvglpp piifwmdnaf
      181 qklpqservs qglngdlyfs nvqpedsred yicyarfnht qtiqqkqpis vkvfsmdsln
      241 dtiaanlsdt diygaksvte rqpvlltptg ststkvelrg nvllleciaa glptpvirwi
      301 keggelpanr tffenfkktl kiidvseads gnykciarnt lgsvhhvisv tvkaapywit
      361 aprnlvlspg edgtlicran gnpkpniswl angvpiaiap edpsrkvdgd tiifshvqer
      421 ssavyqcnas neygyllana fvnvlaeppr iltpadklyq viadspalld cayfgspkpe
      481 iewfkgvkgs ilrgseyifh yngtleipva qkdssgtytc varnelgkiq nevqlevkdp
      541 tmiikqpeyk viqrygqvsf eciikhdstl lptviwlkdn dvlpdderfl vgkdnltimn
      601 vtdkddgtyt cvvnttldsv sasavltvva apptpaiiya rpnppfdlel tgqlersiel
      661 swipgdenns pitnfvieye dglhepgvwh hqtevpgtqt tvhlklspyv nysfrviavn
      721 eigrsqpsep seqyltksas pdenpsnvqg igsepdnlvi twesltdfqs ngpglqykvs
      781 wrqkdvddew tsvivanvsk yivsgtptfv pyeikvqaln dlgyapepse vighsgedlp
      841 mvapgnvqvh vinstlakvh wdpvplksvr ghlqgykvyy wkvqslsrrs rrhveknilt
      901 frgnktfgml pglepyssyk lnvrvvngkg egpaspdkvf ktpegvpssp sflkitnptl
      961 dsltlewgsp ihpngvltsy ilkfqpinnt helgplveir ipanesslil knlnystryk
     1021 fyfnaqtsvg sgsqiteeav timdeagilr pavgagkvqp lyprirnitt aaaetyanis
     1081 weyegpdhtn fyveygvags kedwkkeivn gsrsffvlkg ltpgtaykvr vgaeglsgfr
     1141 ssedvfetgp amasrqvdia tqgwfiglmc avallilill ivcfirrnkg gkypvkeked
     1201 ahadpeiqpm keddgtfgey rsisawtgkk ldkekkrkgs cassseadpv ftkpksvrsd
     1261 rssffrrsgd qysstrsets ytrrkarqss eltrvssvsa slcqekkksd ewkyrrgsrh
     1321 haseqqimgs eegsdsqagq pspfqqplsc nsihgsmkkq hslqhwfsqs pdhssdsedt
     1381 qssyhrkvrp stttcfsese knslmksvil pelatvlkna ltaarqsits vaqarshsvk
     1441 hprgpvteip vvpleatgss sqtfesdhmd sskgwtssgk ekhkadkale vesspededv
     1501 ssesptedqe egpdpvrkfd menqnflfkh ikrvlmlkys ksecaseelp ipseegkvdn
     1561 alpihsaved lvcriwgnpe akheapavlh klyplpvdka alwgnlpkvd ralvtddsvl
     1621 svpanrdvfp kdptdrkvee aikrsfklva aqlgvsiyct ytskalliwl eeerarckkk
     1681 wvssgamqrk rrlckiaanf ihdaaedslr ltvknmaclt vawraiwlrp wtssldltck
     1741 llslpytggk lfgdslvqim kdfserrcsl rqlkkkssvr sssfcyphkc lssfrsppkf
     1801 kgrkgkykss qlfhakyert slfqrdtkss rgtf
//
LOCUS       XP_053919377            1825 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X7 [Cuculus canorus].
ACCESSION   XP_053919377
VERSION     XP_053919377.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063402.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1825
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1825
                     /product="neuronal cell adhesion molecule isoform X7"
                     /calculated_mol_wt=203180
     Region          41..135
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          41..45
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          50..54
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          59..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          72..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          80..82
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          89..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          125..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          144..233
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          195..199
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          210..215
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          271..353
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          283..287
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          296..300
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          318..322
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          332..337
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          345..348
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          357..445
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          373..377
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          386..390
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          410..414
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          424..429
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          437..440
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          449..537
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          467..471
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          480..484
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          503..507
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          517..522
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          530..533
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          543..628
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          558..562
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409359"
     Region          573..578
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409359"
     Region          595..598
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409359"
     Region          602..1124
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          608..613
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409359"
     Region          621..624
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409359"
     Region          642..732
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(642,708,723)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(724..725,727..728)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1177..>1213
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     Region          1543..1752
                     /region_name="LAP2alpha"
                     /note="Lamina-associated polypeptide 2 alpha; pfam11560"
                     /db_xref="CDD:371604"
     CDS             1..1825
                     /gene="NRCAM"
                     /coded_by="XM_054063402.1:333..5810"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld sklleellqp ptitqqspkd yivdpreniv
       61 iqceakgkpp psfswtrngt hfdidkdalv tmkpnsgtlv inimnggkae ayegvyqcta
      121 rnergaaisn nivirpsrsp lwtkeklepn hvregdslvl hcrppvglpp piifwmdnaf
      181 qklpqservs qglngdlyfs nvqpedsred yicyarfnht qtiqqkqpis vkvfsmdsln
      241 dtiaanlsdt diygaksvte rqpvlltptg ststkvelrg nvllleciaa glptpvirwi
      301 keggelpanr tffenfkktl kiidvseads gnykciarnt lgsvhhvisv tvkaapywit
      361 aprnlvlspg edgtlicran gnpkpniswl angvpiaiap edpsrkvdgd tiifshvqer
      421 ssavyqcnas neygyllana fvnvlaeppr iltpadklyq viadspalld cayfgspkpe
      481 iewfkgvkgs ilrgseyifh yngtleipva qkdssgtytc varnelgkiq nevqlevkdp
      541 tmiikqpeyk viqrygqvsf eciikhdstl lptviwlkdn dvlpdderfl vgkdnltimn
      601 vtdkddgtyt cvvnttldsv sasavltvva apptpaiiya rpnppfdlel tgqlersiel
      661 swipgdenns pitnfvieye dglhepgvwh hqtevpgtqt tvhlklspyv nysfrviavn
      721 eigrsqpsep seqyltksas pdenpsnvqg igsepdnlvi twesltdfqs ngpglqykvs
      781 wrqkdvddew tsvivanvsk yivsgtptfv pyeikvqaln dlgyapepse vighsgedlp
      841 mvapgnvqvh vinstlakvh wdpvplksvr ghlqgykvyy wkvqslsrrs rrhveknilt
      901 frgnktfgml pglepyssyk lnvrvvngkg egpaspdkvf ktpegvpssp sflkitnptl
      961 dsltlewgsp ihpngvltsy ilkfqpinnt helgplveir ipanesslil knlnystryk
     1021 fyfnaqtsvg sgsqiteeav timdegkmvq plyprirnit taaaetyani sweyegpdht
     1081 nfyveygvag skedwkkeiv ngsrsffvlk gltpgtaykv rvgaeglsgf rssedvfetg
     1141 pamasrqvdi atqgwfiglm cavallilil livcfirrnk ggkypvkeke dahadpeiqp
     1201 mkeddgtfge yrsisawtgk kldkekkrkg scassseadp vftkpksvrs drssffrrsg
     1261 dqysstrset sytrrkarqs seltrvssvs aslcqekkks dewkyrrgsr hhaseqqimg
     1321 seegsdsqag qpspfqqpls cnsihgsmkk qhslqhwfsq spdhssdsed tqssyhrkvr
     1381 pstttcfses eknslmksvi lpelatvlkn altaarqsit svaqarshsv khprgpvtei
     1441 pvvpleatgs ssqtfesdhm dsskgwtssg kekhkadkal evesspeded vssesptedq
     1501 eegpdpvrkf dmenqnflfk hikrvlmlky sksecaseel pipseegkvd nalpihsave
     1561 dlvcriwgnp eakheapavl hklyplpvdk aalwgnlpkv dralvtddsv lsvpanrdvf
     1621 pkdptdrkve eaikrsfklv aaqlgvsiyc tytskalliw leeerarckk kwvssgamqr
     1681 krrlckiaan fihdaaedsl rltvknmacl tvawraiwlr pwtssldltc kllslpytgg
     1741 klfgdslvqi mkdfserrcs lrqlkkkssv rsssfcyphk clssfrsppk fkgrkgkyks
     1801 sqlfhakyer tslfqrdtks srgtf
//
LOCUS       XP_053919385            1822 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X8 [Cuculus canorus].
ACCESSION   XP_053919385
VERSION     XP_053919385.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063410.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1822
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1822
                     /product="neuronal cell adhesion molecule isoform X8"
                     /calculated_mol_wt=202864
     Region          41..135
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          41..45
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          50..54
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          59..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          72..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          80..82
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          89..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          125..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          144..233
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          195..199
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          210..215
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          271..353
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          283..287
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          296..300
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          318..322
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          332..337
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          345..348
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          357..445
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          373..377
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          386..390
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          410..414
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          424..429
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          437..440
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          449..537
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          467..471
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          480..484
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          503..507
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          517..522
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          530..533
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          543..628
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          558..562
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409359"
     Region          573..578
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409359"
     Region          595..598
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409359"
     Region          602..1121
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          608..613
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409359"
     Region          621..624
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409359"
     Region          642..732
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(642,708,723)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(724..725,727..728)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1174..>1210
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     Region          1540..1749
                     /region_name="LAP2alpha"
                     /note="Lamina-associated polypeptide 2 alpha; pfam11560"
                     /db_xref="CDD:371604"
     CDS             1..1822
                     /gene="NRCAM"
                     /coded_by="XM_054063410.1:333..5801"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld sklleellqp ptitqqspkd yivdpreniv
       61 iqceakgkpp psfswtrngt hfdidkdalv tmkpnsgtlv inimnggkae ayegvyqcta
      121 rnergaaisn nivirpsrsp lwtkeklepn hvregdslvl hcrppvglpp piifwmdnaf
      181 qklpqservs qglngdlyfs nvqpedsred yicyarfnht qtiqqkqpis vkvfsmdsln
      241 dtiaanlsdt diygaksvte rqpvlltptg ststkvelrg nvllleciaa glptpvirwi
      301 keggelpanr tffenfkktl kiidvseads gnykciarnt lgsvhhvisv tvkaapywit
      361 aprnlvlspg edgtlicran gnpkpniswl angvpiaiap edpsrkvdgd tiifshvqer
      421 ssavyqcnas neygyllana fvnvlaeppr iltpadklyq viadspalld cayfgspkpe
      481 iewfkgvkgs ilrgseyifh yngtleipva qkdssgtytc varnelgkiq nevqlevkdp
      541 tmiikqpeyk viqrygqvsf eciikhdstl lptviwlkdn dvlpdderfl vgkdnltimn
      601 vtdkddgtyt cvvnttldsv sasavltvva apptpaiiya rpnppfdlel tgqlersiel
      661 swipgdenns pitnfvieye dglhepgvwh hqtevpgtqt tvhlklspyv nysfrviavn
      721 eigrsqpsep seqyltksas pdenpsnvqg igsepdnlvi twesltdfqs ngpglqykvs
      781 wrqkdvddew tsvivanvsk yivsgtptfv pyeikvqaln dlgyapepse vighsgedlp
      841 mvapgnvqvh vinstlakvh wdpvplksvr ghlqgykvyy wkvqslsrrs rrhveknilt
      901 frgnktfgml pglepyssyk lnvrvvngkg egpaspdkvf ktpegvpssp sflkitnptl
      961 dsltlewgsp ihpngvltsy ilkfqpinnt helgplveir ipanesslil knlnystryk
     1021 fyfnaqtsvg sgsqiteeav timdevqply prirnittaa aetyaniswe yegpdhtnfy
     1081 veygvagske dwkkeivngs rsffvlkglt pgtaykvrvg aeglsgfrss edvfetgpam
     1141 asrqvdiatq gwfiglmcav allililliv cfirrnkggk ypvkekedah adpeiqpmke
     1201 ddgtfgeyrs isawtgkkld kekkrkgsca ssseadpvft kpksvrsdrs sffrrsgdqy
     1261 sstrsetsyt rrkarqssel trvssvsasl cqekkksdew kyrrgsrhha seqqimgsee
     1321 gsdsqagqps pfqqplscns ihgsmkkqhs lqhwfsqspd hssdsedtqs syhrkvrpst
     1381 ttcfsesekn slmksvilpe latvlknalt aarqsitsva qarshsvkhp rgpvteipvv
     1441 pleatgsssq tfesdhmdss kgwtssgkek hkadkaleve sspededvss esptedqeeg
     1501 pdpvrkfdme nqnflfkhik rvlmlkysks ecaseelpip seegkvdnal pihsavedlv
     1561 criwgnpeak heapavlhkl yplpvdkaal wgnlpkvdra lvtddsvlsv panrdvfpkd
     1621 ptdrkveeai krsfklvaaq lgvsiyctyt skalliwlee erarckkkwv ssgamqrkrr
     1681 lckiaanfih daaedslrlt vknmacltva wraiwlrpwt ssldltckll slpytggklf
     1741 gdslvqimkd fserrcslrq lkkkssvrss sfcyphkcls sfrsppkfkg rkgkykssql
     1801 fhakyertsl fqrdtkssrg tf
//
LOCUS       XP_053919391            1815 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X9 [Cuculus canorus].
ACCESSION   XP_053919391
VERSION     XP_053919391.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063416.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1815
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1815
                     /product="neuronal cell adhesion molecule isoform X9"
                     /calculated_mol_wt=201974
     Region          41..135
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          41..45
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          50..54
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          59..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          72..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          80..82
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          89..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          125..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          144..233
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          195..199
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          210..215
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          252..334
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          264..268
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          277..281
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          299..303
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          313..318
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          326..329
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          338..426
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          354..358
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          367..371
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          391..395
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          405..410
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          418..421
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          430..518
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          448..452
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          461..465
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          484..488
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          498..503
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          511..514
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          524..609
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          539..543
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409359"
     Region          554..559
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409359"
     Region          576..579
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409359"
     Region          583..1114
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          589..594
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409359"
     Region          602..605
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409359"
     Region          623..713
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(623,689,704)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(705..706,708..709)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1167..>1203
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     Region          1533..1742
                     /region_name="LAP2alpha"
                     /note="Lamina-associated polypeptide 2 alpha; pfam11560"
                     /db_xref="CDD:371604"
     CDS             1..1815
                     /gene="NRCAM"
                     /coded_by="XM_054063416.1:333..5780"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld sklleellqp ptitqqspkd yivdpreniv
       61 iqceakgkpp psfswtrngt hfdidkdalv tmkpnsgtlv inimnggkae ayegvyqcta
      121 rnergaaisn nivirpsrsp lwtkeklepn hvregdslvl hcrppvglpp piifwmdnaf
      181 qklpqservs qglngdlyfs nvqpedsred yicyarfnht qtiqqkqpis vkvfstksvt
      241 erqpvlltpt gststkvelr gnvlllecia aglptpvirw ikeggelpan rtffenfkkt
      301 lkiidvsead sgnykciarn tlgsvhhvis vtvkaapywi taprnlvlsp gedgtlicra
      361 ngnpkpnisw langvpiaia pedpsrkvdg dtiifshvqe rssavyqcna sneygyllan
      421 afvnvlaepp riltpadkly qviadspall dcayfgspkp eiewfkgvkg silrgseyif
      481 hyngtleipv aqkdssgtyt cvarnelgki qnevqlevkd ptmiikqpey kviqrygqvs
      541 feciikhdst llptviwlkd ndvlpdderf lvgkdnltim nvtdkddgty tcvvnttlds
      601 vsasavltvv aapptpaiiy arpnppfdle ltgqlersie lswipgdenn spitnfviey
      661 edglhepgvw hhqtevpgtq ttvhlklspy vnysfrviav neigrsqpse pseqyltksa
      721 spdenpsnvq gigsepdnlv itwesltdfq sngpglqykv swrqkdvdde wtsvivanvs
      781 kyivsgtptf vpyeikvqal ndlgyapeps evighsgedl pmvapgnvqv hvinstlakv
      841 hwdpvplksv rghlqgykvy ywkvqslsrr srrhveknil tfrgnktfgm lpglepyssy
      901 klnvrvvngk gegpaspdkv fktpegvpss psflkitnpt ldsltlewgs pihpngvlts
      961 yilkfqpinn thelgplvei ripanessli lknlnystry kfyfnaqtsv gsgsqiteea
     1021 vtimdeagil rpavgagkvq plyprirnit taaaetyani sweyegpdht nfyveygvag
     1081 skedwkkeiv ngsrsffvlk gltpgtaykv rvgaeglsgf rssedvfetg pamasrqvdi
     1141 atqgwfiglm cavallilil livcfirrnk ggkypvkeke dahadpeiqp mkeddgtfge
     1201 yrsisawtgk kldkekkrkg scassseadp vftkpksvrs drssffrrsg dqysstrset
     1261 sytrrkarqs seltrvssvs aslcqekkks dewkyrrgsr hhaseqqimg seegsdsqag
     1321 qpspfqqpls cnsihgsmkk qhslqhwfsq spdhssdsed tqssyhrkvr pstttcfses
     1381 eknslmksvi lpelatvlkn altaarqsit svaqarshsv khprgpvtei pvvpleatgs
     1441 ssqtfesdhm dsskgwtssg kekhkadkal evesspeded vssesptedq eegpdpvrkf
     1501 dmenqnflfk hikrvlmlky sksecaseel pipseegkvd nalpihsave dlvcriwgnp
     1561 eakheapavl hklyplpvdk aalwgnlpkv dralvtddsv lsvpanrdvf pkdptdrkve
     1621 eaikrsfklv aaqlgvsiyc tytskalliw leeerarckk kwvssgamqr krrlckiaan
     1681 fihdaaedsl rltvknmacl tvawraiwlr pwtssldltc kllslpytgg klfgdslvqi
     1741 mkdfserrcs lrqlkkkssv rsssfcyphk clssfrsppk fkgrkgkyks sqlfhakyer
     1801 tslfqrdtks srgtf
//
LOCUS       XP_053919402            1763 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X10 [Cuculus canorus].
ACCESSION   XP_053919402
VERSION     XP_053919402.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063427.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1763
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1763
                     /product="neuronal cell adhesion molecule isoform X10"
                     /calculated_mol_wt=196163
     Region          41..135
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          41..45
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          50..54
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          59..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          72..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          80..82
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          89..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          125..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          144..233
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          195..199
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          210..215
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          271..353
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          283..287
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          296..300
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          318..322
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          332..337
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          345..348
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          357..445
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          373..377
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          386..390
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          410..414
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          424..429
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          437..440
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          449..537
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          467..471
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          480..484
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          503..507
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          517..522
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          530..533
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          543..628
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          558..562
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409359"
     Region          573..578
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409359"
     Region          595..598
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409359"
     Region          602..1070
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          608..613
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409359"
     Region          621..624
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409359"
     Region          642..732
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(642,708,723)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(724..725,727..728)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1115..>1151
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     Region          1481..1690
                     /region_name="LAP2alpha"
                     /note="Lamina-associated polypeptide 2 alpha; pfam11560"
                     /db_xref="CDD:371604"
     CDS             1..1763
                     /gene="NRCAM"
                     /coded_by="XM_054063427.1:334..5625"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld sklleellqp ptitqqspkd yivdpreniv
       61 iqceakgkpp psfswtrngt hfdidkdalv tmkpnsgtlv inimnggkae ayegvyqcta
      121 rnergaaisn nivirpsrsp lwtkeklepn hvregdslvl hcrppvglpp piifwmdnaf
      181 qklpqservs qglngdlyfs nvqpedsred yicyarfnht qtiqqkqpis vkvfsmdsln
      241 dtiaanlsdt diygaksvte rqpvlltptg ststkvelrg nvllleciaa glptpvirwi
      301 keggelpanr tffenfkktl kiidvseads gnykciarnt lgsvhhvisv tvkaapywit
      361 aprnlvlspg edgtlicran gnpkpniswl angvpiaiap edpsrkvdgd tiifshvqer
      421 ssavyqcnas neygyllana fvnvlaeppr iltpadklyq viadspalld cayfgspkpe
      481 iewfkgvkgs ilrgseyifh yngtleipva qkdssgtytc varnelgkiq nevqlevkdp
      541 tmiikqpeyk viqrygqvsf eciikhdstl lptviwlkdn dvlpdderfl vgkdnltimn
      601 vtdkddgtyt cvvnttldsv sasavltvva apptpaiiya rpnppfdlel tgqlersiel
      661 swipgdenns pitnfvieye dglhepgvwh hqtevpgtqt tvhlklspyv nysfrviavn
      721 eigrsqpsep seqyltksas pdenpsnvqg igsepdnlvi twesltdfqs ngpglqykvs
      781 wrqkdvddew tsvivanvsk yivsgtptfv pyeikvqaln dlgyapepse vighsgedlp
      841 mvapgnvqvh vinstlakvh wdpvplksvr ghlqgykvyy wkvqslsrrs rrhveknilt
      901 frgnktfgml pglepyssyk lnvrvvngkg egpaspdkvf ktpegvpssp sflkitnptl
      961 dsltlewgsp ihpngvltsy ilkfqpinnt helgplveir ipanesslil knlnystryk
     1021 fyfnaqtsvg sgsqiteeav timdeagilr pavgagkgys etlfatspvm htvrptfyka
     1081 masrqvdiat qgwfiglmca vallililli vcfirrnkgg kypvkekeda hadpeiqpmk
     1141 eddgtfgeyr sisawtgkkl dkekkrkgsc assseadpvf tkpksvrsdr ssffrrsgdq
     1201 ysstrsetsy trrkarqsse ltrvssvsas lcqekkksde wkyrrgsrhh aseqqimgse
     1261 egsdsqagqp spfqqplscn sihgsmkkqh slqhwfsqsp dhssdsedtq ssyhrkvrps
     1321 tttcfsesek nslmksvilp elatvlknal taarqsitsv aqarshsvkh prgpvteipv
     1381 vpleatgsss qtfesdhmds skgwtssgke khkadkalev esspededvs sesptedqee
     1441 gpdpvrkfdm enqnflfkhi krvlmlkysk secaseelpi pseegkvdna lpihsavedl
     1501 vcriwgnpea kheapavlhk lyplpvdkaa lwgnlpkvdr alvtddsvls vpanrdvfpk
     1561 dptdrkveea ikrsfklvaa qlgvsiycty tskalliwle eerarckkkw vssgamqrkr
     1621 rlckiaanfi hdaaedslrl tvknmacltv awraiwlrpw tssldltckl lslpytggkl
     1681 fgdslvqimk dfserrcslr qlkkkssvrs ssfcyphkcl ssfrsppkfk grkgkykssq
     1741 lfhakyerts lfqrdtkssr gtf
//
LOCUS       XP_053919410            1751 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X11 [Cuculus canorus].
ACCESSION   XP_053919410
VERSION     XP_053919410.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063435.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1751
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1751
                     /product="neuronal cell adhesion molecule isoform X11"
                     /calculated_mol_wt=195071
     Region          41..135
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          41..45
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          50..54
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          59..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          72..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          80..82
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          89..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          125..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          144..233
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          195..199
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          210..215
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          271..353
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          283..287
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          296..300
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          318..322
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          332..337
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          345..348
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          357..445
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          373..377
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          386..390
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          410..414
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          424..429
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          437..440
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          449..537
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          467..471
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          480..484
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          503..507
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          517..522
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          530..533
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          543..628
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          558..562
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409359"
     Region          573..578
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409359"
     Region          595..598
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409359"
     Region          602..1041
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          608..613
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409359"
     Region          621..624
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409359"
     Region          642..732
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(642,708,723)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(724..725,727..728)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1103..>1139
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     Region          1469..1678
                     /region_name="LAP2alpha"
                     /note="Lamina-associated polypeptide 2 alpha; pfam11560"
                     /db_xref="CDD:371604"
     CDS             1..1751
                     /gene="NRCAM"
                     /coded_by="XM_054063435.1:334..5589"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld sklleellqp ptitqqspkd yivdpreniv
       61 iqceakgkpp psfswtrngt hfdidkdalv tmkpnsgtlv inimnggkae ayegvyqcta
      121 rnergaaisn nivirpsrsp lwtkeklepn hvregdslvl hcrppvglpp piifwmdnaf
      181 qklpqservs qglngdlyfs nvqpedsred yicyarfnht qtiqqkqpis vkvfsmdsln
      241 dtiaanlsdt diygaksvte rqpvlltptg ststkvelrg nvllleciaa glptpvirwi
      301 keggelpanr tffenfkktl kiidvseads gnykciarnt lgsvhhvisv tvkaapywit
      361 aprnlvlspg edgtlicran gnpkpniswl angvpiaiap edpsrkvdgd tiifshvqer
      421 ssavyqcnas neygyllana fvnvlaeppr iltpadklyq viadspalld cayfgspkpe
      481 iewfkgvkgs ilrgseyifh yngtleipva qkdssgtytc varnelgkiq nevqlevkdp
      541 tmiikqpeyk viqrygqvsf eciikhdstl lptviwlkdn dvlpdderfl vgkdnltimn
      601 vtdkddgtyt cvvnttldsv sasavltvva apptpaiiya rpnppfdlel tgqlersiel
      661 swipgdenns pitnfvieye dglhepgvwh hqtevpgtqt tvhlklspyv nysfrviavn
      721 eigrsqpsep seqyltksas pdenpsnvqg igsepdnlvi twesltdfqs ngpglqykvs
      781 wrqkdvddew tsvivanvsk yivsgtptfv pyeikvqaln dlgyapepse vighsgedlp
      841 mvapgnvqvh vinstlakvh wdpvplksvr ghlqgykvyy wkvqslsrrs rrhveknilt
      901 frgnktfgml pglepyssyk lnvrvvngkg egpaspdkvf ktpegvpssp sflkitnptl
      961 dsltlewgsp ihpngvltsy ilkfqpinnt helgplveir ipanesslil knlnystryk
     1021 fyfnaqtsvg sgsqiteeav timdegyset lfatspvmht vrptfykama srqvdiatqg
     1081 wfiglmcava llilillivc firrnkggky pvkekedaha dpeiqpmked dgtfgeyrsi
     1141 sawtgkkldk ekkrkgscas sseadpvftk pksvrsdrss ffrrsgdqys strsetsytr
     1201 rkarqsselt rvssvsaslc qekkksdewk yrrgsrhhas eqqimgseeg sdsqagqpsp
     1261 fqqplscnsi hgsmkkqhsl qhwfsqspdh ssdsedtqss yhrkvrpstt tcfsesekns
     1321 lmksvilpel atvlknalta arqsitsvaq arshsvkhpr gpvteipvvp leatgsssqt
     1381 fesdhmdssk gwtssgkekh kadkaleves spededvsse sptedqeegp dpvrkfdmen
     1441 qnflfkhikr vlmlkyskse caseelpips eegkvdnalp ihsavedlvc riwgnpeakh
     1501 eapavlhkly plpvdkaalw gnlpkvdral vtddsvlsvp anrdvfpkdp tdrkveeaik
     1561 rsfklvaaql gvsiyctyts kalliwleee rarckkkwvs sgamqrkrrl ckiaanfihd
     1621 aaedslrltv knmacltvaw raiwlrpwts sldltcklls lpytggklfg dslvqimkdf
     1681 serrcslrql kkkssvrsss fcyphkclss frsppkfkgr kgkykssqlf hakyertslf
     1741 qrdtkssrgt f
//
LOCUS       XP_053919419            1732 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X12 [Cuculus canorus].
ACCESSION   XP_053919419
VERSION     XP_053919419.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063444.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1732
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1732
                     /product="neuronal cell adhesion molecule isoform X12"
                     /calculated_mol_wt=192873
     Region          41..135
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          41..45
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          50..54
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          59..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          72..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          80..82
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          89..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          125..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          144..233
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          195..199
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          210..215
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          271..353
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          283..287
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          296..300
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          318..322
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          332..337
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          345..348
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          357..445
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          373..377
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          386..390
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          410..414
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          424..429
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          437..440
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          449..537
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          467..471
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          480..484
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          503..507
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          517..522
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          530..533
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          543..628
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          558..562
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409359"
     Region          573..578
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409359"
     Region          595..598
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409359"
     Region          602..1041
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          608..613
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409359"
     Region          621..624
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409359"
     Region          642..732
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(642,708,723)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(724..725,727..728)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1084..>1120
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     Region          1450..1659
                     /region_name="LAP2alpha"
                     /note="Lamina-associated polypeptide 2 alpha; pfam11560"
                     /db_xref="CDD:371604"
     CDS             1..1732
                     /gene="NRCAM"
                     /coded_by="XM_054063444.1:334..5532"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld sklleellqp ptitqqspkd yivdpreniv
       61 iqceakgkpp psfswtrngt hfdidkdalv tmkpnsgtlv inimnggkae ayegvyqcta
      121 rnergaaisn nivirpsrsp lwtkeklepn hvregdslvl hcrppvglpp piifwmdnaf
      181 qklpqservs qglngdlyfs nvqpedsred yicyarfnht qtiqqkqpis vkvfsmdsln
      241 dtiaanlsdt diygaksvte rqpvlltptg ststkvelrg nvllleciaa glptpvirwi
      301 keggelpanr tffenfkktl kiidvseads gnykciarnt lgsvhhvisv tvkaapywit
      361 aprnlvlspg edgtlicran gnpkpniswl angvpiaiap edpsrkvdgd tiifshvqer
      421 ssavyqcnas neygyllana fvnvlaeppr iltpadklyq viadspalld cayfgspkpe
      481 iewfkgvkgs ilrgseyifh yngtleipva qkdssgtytc varnelgkiq nevqlevkdp
      541 tmiikqpeyk viqrygqvsf eciikhdstl lptviwlkdn dvlpdderfl vgkdnltimn
      601 vtdkddgtyt cvvnttldsv sasavltvva apptpaiiya rpnppfdlel tgqlersiel
      661 swipgdenns pitnfvieye dglhepgvwh hqtevpgtqt tvhlklspyv nysfrviavn
      721 eigrsqpsep seqyltksas pdenpsnvqg igsepdnlvi twesltdfqs ngpglqykvs
      781 wrqkdvddew tsvivanvsk yivsgtptfv pyeikvqaln dlgyapepse vighsgedlp
      841 mvapgnvqvh vinstlakvh wdpvplksvr ghlqgykvyy wkvqslsrrs rrhveknilt
      901 frgnktfgml pglepyssyk lnvrvvngkg egpaspdkvf ktpegvpssp sflkitnptl
      961 dsltlewgsp ihpngvltsy ilkfqpinnt helgplveir ipanesslil knlnystryk
     1021 fyfnaqtsvg sgsqiteeav timdegkmam asrqvdiatq gwfiglmcav allililliv
     1081 cfirrnkggk ypvkekedah adpeiqpmke ddgtfgeyrs isawtgkkld kekkrkgsca
     1141 ssseadpvft kpksvrsdrs sffrrsgdqy sstrsetsyt rrkarqssel trvssvsasl
     1201 cqekkksdew kyrrgsrhha seqqimgsee gsdsqagqps pfqqplscns ihgsmkkqhs
     1261 lqhwfsqspd hssdsedtqs syhrkvrpst ttcfsesekn slmksvilpe latvlknalt
     1321 aarqsitsva qarshsvkhp rgpvteipvv pleatgsssq tfesdhmdss kgwtssgkek
     1381 hkadkaleve sspededvss esptedqeeg pdpvrkfdme nqnflfkhik rvlmlkysks
     1441 ecaseelpip seegkvdnal pihsavedlv criwgnpeak heapavlhkl yplpvdkaal
     1501 wgnlpkvdra lvtddsvlsv panrdvfpkd ptdrkveeai krsfklvaaq lgvsiyctyt
     1561 skalliwlee erarckkkwv ssgamqrkrr lckiaanfih daaedslrlt vknmacltva
     1621 wraiwlrpwt ssldltckll slpytggklf gdslvqimkd fserrcslrq lkkkssvrss
     1681 sfcyphkcls sfrsppkfkg rkgkykssql fhakyertsl fqrdtkssrg tf
//
LOCUS       XP_053919426            1729 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X13 [Cuculus canorus].
ACCESSION   XP_053919426
VERSION     XP_053919426.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063451.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1729
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1729
                     /product="neuronal cell adhesion molecule isoform X13"
                     /calculated_mol_wt=192556
     Region          41..135
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          41..45
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          50..54
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          59..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          72..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          80..82
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          89..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          125..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          144..233
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          195..199
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          210..215
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          271..353
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          283..287
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          296..300
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          318..322
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          332..337
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          345..348
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          357..445
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          373..377
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          386..390
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          410..414
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          424..429
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          437..440
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          449..537
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          467..471
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          480..484
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          503..507
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          517..522
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          530..533
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          543..628
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          558..562
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409359"
     Region          573..578
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409359"
     Region          595..598
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409359"
     Region          602..1060
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          608..613
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409359"
     Region          621..624
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409359"
     Region          642..732
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(642,708,723)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(724..725,727..728)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1081..>1117
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     Region          1447..1656
                     /region_name="LAP2alpha"
                     /note="Lamina-associated polypeptide 2 alpha; pfam11560"
                     /db_xref="CDD:371604"
     CDS             1..1729
                     /gene="NRCAM"
                     /coded_by="XM_054063451.1:333..5522"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld sklleellqp ptitqqspkd yivdpreniv
       61 iqceakgkpp psfswtrngt hfdidkdalv tmkpnsgtlv inimnggkae ayegvyqcta
      121 rnergaaisn nivirpsrsp lwtkeklepn hvregdslvl hcrppvglpp piifwmdnaf
      181 qklpqservs qglngdlyfs nvqpedsred yicyarfnht qtiqqkqpis vkvfsmdsln
      241 dtiaanlsdt diygaksvte rqpvlltptg ststkvelrg nvllleciaa glptpvirwi
      301 keggelpanr tffenfkktl kiidvseads gnykciarnt lgsvhhvisv tvkaapywit
      361 aprnlvlspg edgtlicran gnpkpniswl angvpiaiap edpsrkvdgd tiifshvqer
      421 ssavyqcnas neygyllana fvnvlaeppr iltpadklyq viadspalld cayfgspkpe
      481 iewfkgvkgs ilrgseyifh yngtleipva qkdssgtytc varnelgkiq nevqlevkdp
      541 tmiikqpeyk viqrygqvsf eciikhdstl lptviwlkdn dvlpdderfl vgkdnltimn
      601 vtdkddgtyt cvvnttldsv sasavltvva apptpaiiya rpnppfdlel tgqlersiel
      661 swipgdenns pitnfvieye dglhepgvwh hqtevpgtqt tvhlklspyv nysfrviavn
      721 eigrsqpsep seqyltksas pdenpsnvqg igsepdnlvi twesltdfqs ngpglqykvs
      781 wrqkdvddew tsvivanvsk yivsgtptfv pyeikvqaln dlgyapepse vighsgedlp
      841 mvapgnvqvh vinstlakvh wdpvplksvr ghlqgykvyy wkvqslsrrs rrhveknilt
      901 frgnktfgml pglepyssyk lnvrvvngkg egpaspdkvf ktpegvpssp sflkitnptl
      961 dsltlewgsp ihpngvltsy ilkfqpinnt helgplveir ipanesslil knlnystryk
     1021 fyfnaqtsvg sgsqiteeav timdeamasr qvdiatqgwf iglmcavall ilillivcfi
     1081 rrnkggkypv kekedahadp eiqpmkeddg tfgeyrsisa wtgkkldkek krkgscasss
     1141 eadpvftkpk svrsdrssff rrsgdqysst rsetsytrrk arqsseltrv ssvsaslcqe
     1201 kkksdewkyr rgsrhhaseq qimgseegsd sqagqpspfq qplscnsihg smkkqhslqh
     1261 wfsqspdhss dsedtqssyh rkvrpstttc fseseknslm ksvilpelat vlknaltaar
     1321 qsitsvaqar shsvkhprgp vteipvvple atgsssqtfe sdhmdsskgw tssgkekhka
     1381 dkalevessp ededvssesp tedqeegpdp vrkfdmenqn flfkhikrvl mlkyskseca
     1441 seelpipsee gkvdnalpih savedlvcri wgnpeakhea pavlhklypl pvdkaalwgn
     1501 lpkvdralvt ddsvlsvpan rdvfpkdptd rkveeaikrs fklvaaqlgv siyctytska
     1561 lliwleeera rckkkwvssg amqrkrrlck iaanfihdaa edslrltvkn macltvawra
     1621 iwlrpwtssl dltckllslp ytggklfgds lvqimkdfse rrcslrqlkk kssvrsssfc
     1681 yphkclssfr sppkfkgrkg kykssqlfha kyertslfqr dtkssrgtf
//
LOCUS       XP_053919437            1719 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X14 [Cuculus canorus].
ACCESSION   XP_053919437
VERSION     XP_053919437.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063462.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1719
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1719
                     /product="neuronal cell adhesion molecule isoform X14"
                     /calculated_mol_wt=191561
     Region          41..135
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          41..45
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          50..54
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          59..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          72..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          80..82
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          89..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          125..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          144..233
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          195..199
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          210..215
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          271..353
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          283..287
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          296..300
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          318..322
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          332..337
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          345..348
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          357..445
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          373..377
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          386..390
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          410..414
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          424..429
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          437..440
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          449..537
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          467..471
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          480..484
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          503..507
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          517..522
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          530..533
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          543..628
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          558..562
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          573..577
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          <594..>822
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          595..598
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          608..613
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          621..624
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          632..722
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(632,698,713)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(714..715,717..718)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          833..925
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(921..922,924..925)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Site            order(937,1005,1020)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          938..1022
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(1021..1022,1024..1025)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1071..>1107
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     Region          1437..1646
                     /region_name="LAP2alpha"
                     /note="Lamina-associated polypeptide 2 alpha; pfam11560"
                     /db_xref="CDD:371604"
     CDS             1..1719
                     /gene="NRCAM"
                     /coded_by="XM_054063462.1:333..5492"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld sklleellqp ptitqqspkd yivdpreniv
       61 iqceakgkpp psfswtrngt hfdidkdalv tmkpnsgtlv inimnggkae ayegvyqcta
      121 rnergaaisn nivirpsrsp lwtkeklepn hvregdslvl hcrppvglpp piifwmdnaf
      181 qklpqservs qglngdlyfs nvqpedsred yicyarfnht qtiqqkqpis vkvfsmdsln
      241 dtiaanlsdt diygaksvte rqpvlltptg ststkvelrg nvllleciaa glptpvirwi
      301 keggelpanr tffenfkktl kiidvseads gnykciarnt lgsvhhvisv tvkaapywit
      361 aprnlvlspg edgtlicran gnpkpniswl angvpiaiap edpsrkvdgd tiifshvqer
      421 ssavyqcnas neygyllana fvnvlaeppr iltpadklyq viadspalld cayfgspkpe
      481 iewfkgvkgs ilrgseyifh yngtleipva qkdssgtytc varnelgkiq nevqlevkdp
      541 tmiikqpeyk viqrygqvsf eciikhdstl lptviwlkdn dvlpdderfl vgkdnltimn
      601 vtdkddgtyt cvvnttldsv sasavltvva rpnppfdlel tgqlersiel swipgdenns
      661 pitnfvieye dglhepgvwh hqtevpgtqt tvhlklspyv nysfrviavn eigrsqpsep
      721 seqyltksas pdenpsnvqg igsepdnlvi twesltdfqs ngpglqykvs wrqkdvddew
      781 tsvivanvsk yivsgtptfv pyeikvqaln dlgyapepse vighsgedlp mvapgnvqvh
      841 vinstlakvh wdpvplksvr ghlqgykvyy wkvqslsrrs rrhveknilt frgnktfgml
      901 pglepyssyk lnvrvvngkg egpaspdkvf ktpegvpssp sflkitnptl dsltlewgsp
      961 ihpngvltsy ilkfqpinnt helgplveir ipanesslil knlnystryk fyfnaqtsvg
     1021 sgsqiteeav timdeamasr qvdiatqgwf iglmcavall ilillivcfi rrnkggkypv
     1081 kekedahadp eiqpmkeddg tfgeyrsisa wtgkkldkek krkgscasss eadpvftkpk
     1141 svrsdrssff rrsgdqysst rsetsytrrk arqsseltrv ssvsaslcqe kkksdewkyr
     1201 rgsrhhaseq qimgseegsd sqagqpspfq qplscnsihg smkkqhslqh wfsqspdhss
     1261 dsedtqssyh rkvrpstttc fseseknslm ksvilpelat vlknaltaar qsitsvaqar
     1321 shsvkhprgp vteipvvple atgsssqtfe sdhmdsskgw tssgkekhka dkalevessp
     1381 ededvssesp tedqeegpdp vrkfdmenqn flfkhikrvl mlkyskseca seelpipsee
     1441 gkvdnalpih savedlvcri wgnpeakhea pavlhklypl pvdkaalwgn lpkvdralvt
     1501 ddsvlsvpan rdvfpkdptd rkveeaikrs fklvaaqlgv siyctytska lliwleeera
     1561 rckkkwvssg amqrkrrlck iaanfihdaa edslrltvkn macltvawra iwlrpwtssl
     1621 dltckllslp ytggklfgds lvqimkdfse rrcslrqlkk kssvrsssfc yphkclssfr
     1681 sppkfkgrkg kykssqlfha kyertslfqr dtkssrgtf
//
LOCUS       XP_053919444            1840 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X15 [Cuculus canorus].
ACCESSION   XP_053919444
VERSION     XP_053919444.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063469.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1840
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1840
                     /product="neuronal cell adhesion molecule isoform X15"
                     /calculated_mol_wt=204775
     Region          35..129
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          35..39
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          44..48
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          53..60
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          66..71
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          74..76
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          83..86
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          108..116
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          119..129
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          138..227
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          152..156
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          166..170
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          189..193
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          204..209
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          220..223
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          265..347
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          277..281
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          290..294
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          312..316
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          326..331
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          339..342
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          351..439
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          367..371
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          380..384
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          404..408
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          418..423
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          431..434
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          443..531
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          461..465
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          474..478
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          497..501
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          511..516
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          524..527
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          537..622
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          552..556
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          567..571
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          589..592
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          602..607
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          615..618
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          626..716
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(626,692,707)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          681..1138
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(708..709,711..712)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1192..>1228
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     Region          1558..1767
                     /region_name="LAP2alpha"
                     /note="Lamina-associated polypeptide 2 alpha; pfam11560"
                     /db_xref="CDD:371604"
     CDS             1..1840
                     /gene="NRCAM"
                     /coded_by="XM_054063469.1:47..5569"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld llqpptitqq spkdyivdpr eniviqceak
       61 gkpppsfswt rngthfdidk dalvtmkpns gtlvinimng gkaeayegvy qctarnerga
      121 aisnnivirp srsplwtkek lepnhvregd slvlhcrppv glpppiifwm dnafqklpqs
      181 ervsqglngd lyfsnvqped sredyicyar fnhtqtiqqk qpisvkvfsm dslndtiaan
      241 lsdtdiygak svterqpvll tptgststkv elrgnvllle ciaaglptpv irwikeggel
      301 panrtffenf kktlkiidvs eadsgnykci arntlgsvhh visvtvkaap ywitaprnlv
      361 lspgedgtli crangnpkpn iswlangvpi aiapedpsrk vdgdtiifsh vqerssavyq
      421 cnasneygyl lanafvnvla eppriltpad klyqviadsp alldcayfgs pkpeiewfkg
      481 vkgsilrgse yifhyngtle ipvaqkdssg tytcvarnel gkiqnevqle vkdptmiikq
      541 peykviqryg qvsfeciikh dstllptviw lkdndvlpdd erflvgkdnl timnvtdkdd
      601 gtytcvvntt ldsvsasavl tvvarpnppf dleltgqler sielswipgd ennspitnfv
      661 ieyedglhep gvwhhqtevp gtqttvhlkl spyvnysfrv iavneigrsq psepseqylt
      721 ksaspdenps nvqgigsepd nlvitweslt dfqsngpglq ykvswrqkdv ddewtsviva
      781 nvskyivsgt ptfvpyeikv qalndlgyap epsevighsg edlpmvapgn vqvhvinstl
      841 akvhwdpvpl ksvrghlqgy kvyywkvqsl srrsrrhvek niltfrgnkt fgmlpglepy
      901 ssyklnvrvv ngkgegpasp dkvfktpegv psspsflkit nptldsltle wgspihpngv
      961 ltsyilkfqp innthelgpl veiripanes slilknlnys trykfyfnaq tsvgsgsqit
     1021 eeavtimdea gilrpavgag kgysetlfat spvmhtvrpt fykvqplypr irnittaaae
     1081 tyanisweye gpdhtnfyve ygvagskedw kkeivngsrs ffvlkgltpg taykvrvgae
     1141 glsgfrssed vfetgpamas rqvdiatqgw figlmcaval lilillivcf irrnkggkyp
     1201 vkekedahad peiqpmkedd gtfgeyrsis awtgkkldke kkrkgscass seadpvftkp
     1261 ksvrsdrssf frrsgdqyss trsetsytrr karqsseltr vssvsaslcq ekkksdewky
     1321 rrgsrhhase qqimgseegs dsqagqpspf qqplscnsih gsmkkqhslq hwfsqspdhs
     1381 sdsedtqssy hrkvrpsttt cfseseknsl mksvilpela tvlknaltaa rqsitsvaqa
     1441 rshsvkhprg pvteipvvpl eatgsssqtf esdhmdsskg wtssgkekhk adkalevess
     1501 pededvsses ptedqeegpd pvrkfdmenq nflfkhikrv lmlkysksec aseelpipse
     1561 egkvdnalpi hsavedlvcr iwgnpeakhe apavlhklyp lpvdkaalwg nlpkvdralv
     1621 tddsvlsvpa nrdvfpkdpt drkveeaikr sfklvaaqlg vsiyctytsk alliwleeer
     1681 arckkkwvss gamqrkrrlc kiaanfihda aedslrltvk nmacltvawr aiwlrpwtss
     1741 ldltckllsl pytggklfgd slvqimkdfs errcslrqlk kkssvrsssf cyphkclssf
     1801 rsppkfkgrk gkykssqlfh akyertslfq rdtkssrgtf
//
LOCUS       XP_053919450            1806 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X16 [Cuculus canorus].
ACCESSION   XP_053919450
VERSION     XP_053919450.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063475.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1806
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1806
                     /product="neuronal cell adhesion molecule isoform X16"
                     /calculated_mol_wt=201169
     Region          35..129
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          35..39
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          44..48
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          53..60
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          66..71
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          74..76
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          83..86
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          108..116
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          119..129
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          138..227
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          152..156
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          166..170
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          189..193
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          204..209
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          220..223
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          265..347
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          277..281
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          290..294
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          312..316
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          326..331
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          339..342
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          351..439
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          367..371
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          380..384
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          404..408
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          418..423
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          431..434
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          443..531
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          461..465
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          474..478
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          497..501
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          511..516
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          524..527
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          537..622
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          552..556
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          567..571
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          589..592
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          602..607
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          615..618
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          626..716
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(626,692,707)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          <646..1105
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(708..709,711..712)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1158..>1194
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     Region          1524..1733
                     /region_name="LAP2alpha"
                     /note="Lamina-associated polypeptide 2 alpha; pfam11560"
                     /db_xref="CDD:371604"
     CDS             1..1806
                     /gene="NRCAM"
                     /coded_by="XM_054063475.1:47..5467"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld llqpptitqq spkdyivdpr eniviqceak
       61 gkpppsfswt rngthfdidk dalvtmkpns gtlvinimng gkaeayegvy qctarnerga
      121 aisnnivirp srsplwtkek lepnhvregd slvlhcrppv glpppiifwm dnafqklpqs
      181 ervsqglngd lyfsnvqped sredyicyar fnhtqtiqqk qpisvkvfsm dslndtiaan
      241 lsdtdiygak svterqpvll tptgststkv elrgnvllle ciaaglptpv irwikeggel
      301 panrtffenf kktlkiidvs eadsgnykci arntlgsvhh visvtvkaap ywitaprnlv
      361 lspgedgtli crangnpkpn iswlangvpi aiapedpsrk vdgdtiifsh vqerssavyq
      421 cnasneygyl lanafvnvla eppriltpad klyqviadsp alldcayfgs pkpeiewfkg
      481 vkgsilrgse yifhyngtle ipvaqkdssg tytcvarnel gkiqnevqle vkdptmiikq
      541 peykviqryg qvsfeciikh dstllptviw lkdndvlpdd erflvgkdnl timnvtdkdd
      601 gtytcvvntt ldsvsasavl tvvarpnppf dleltgqler sielswipgd ennspitnfv
      661 ieyedglhep gvwhhqtevp gtqttvhlkl spyvnysfrv iavneigrsq psepseqylt
      721 ksaspdenps nvqgigsepd nlvitweslt dfqsngpglq ykvswrqkdv ddewtsviva
      781 nvskyivsgt ptfvpyeikv qalndlgyap epsevighsg edlpmvapgn vqvhvinstl
      841 akvhwdpvpl ksvrghlqgy kvyywkvqsl srrsrrhvek niltfrgnkt fgmlpglepy
      901 ssyklnvrvv ngkgegpasp dkvfktpegv psspsflkit nptldsltle wgspihpngv
      961 ltsyilkfqp innthelgpl veiripanes slilknlnys trykfyfnaq tsvgsgsqit
     1021 eeavtimdev qplyprirni ttaaaetyan isweyegpdh tnfyveygva gskedwkkei
     1081 vngsrsffvl kgltpgtayk vrvgaeglsg frssedvfet gpamasrqvd iatqgwfigl
     1141 mcavallili llivcfirrn kggkypvkek edahadpeiq pmkeddgtfg eyrsisawtg
     1201 kkldkekkrk gscasssead pvftkpksvr sdrssffrrs gdqysstrse tsytrrkarq
     1261 sseltrvssv saslcqekkk sdewkyrrgs rhhaseqqim gseegsdsqa gqpspfqqpl
     1321 scnsihgsmk kqhslqhwfs qspdhssdse dtqssyhrkv rpstttcfse seknslmksv
     1381 ilpelatvlk naltaarqsi tsvaqarshs vkhprgpvte ipvvpleatg sssqtfesdh
     1441 mdsskgwtss gkekhkadka levesspede dvssespted qeegpdpvrk fdmenqnflf
     1501 khikrvlmlk ysksecasee lpipseegkv dnalpihsav edlvcriwgn peakheapav
     1561 lhklyplpvd kaalwgnlpk vdralvtdds vlsvpanrdv fpkdptdrkv eeaikrsfkl
     1621 vaaqlgvsiy ctytskalli wleeerarck kkwvssgamq rkrrlckiaa nfihdaaeds
     1681 lrltvknmac ltvawraiwl rpwtssldlt ckllslpytg gklfgdslvq imkdfserrc
     1741 slrqlkkkss vrsssfcyph kclssfrspp kfkgrkgkyk ssqlfhakye rtslfqrdtk
     1801 ssrgtf
//
LOCUS       XP_053919458            1803 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X17 [Cuculus canorus].
ACCESSION   XP_053919458
VERSION     XP_053919458.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063483.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1803
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1803
                     /product="neuronal cell adhesion molecule isoform X17"
                     /calculated_mol_wt=200883
     Region          41..135
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          41..45
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          50..54
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          59..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          72..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          80..82
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          89..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          125..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          144..233
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          195..199
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          210..215
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          252..334
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          264..268
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          277..281
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          299..303
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          313..318
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          326..329
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          338..426
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          354..358
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          367..371
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          391..395
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          405..410
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          418..421
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          430..518
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          448..452
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          461..465
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          484..488
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          498..503
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          511..514
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          524..609
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          539..543
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409359"
     Region          554..559
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409359"
     Region          576..579
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409359"
     Region          583..1102
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          589..594
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409359"
     Region          602..605
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409359"
     Region          623..713
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(623,689,704)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(705..706,708..709)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1155..>1191
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     Region          1521..1730
                     /region_name="LAP2alpha"
                     /note="Lamina-associated polypeptide 2 alpha; pfam11560"
                     /db_xref="CDD:371604"
     CDS             1..1803
                     /gene="NRCAM"
                     /coded_by="XM_054063483.1:47..5458"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld sklleellqp ptitqqspkd yivdpreniv
       61 iqceakgkpp psfswtrngt hfdidkdalv tmkpnsgtlv inimnggkae ayegvyqcta
      121 rnergaaisn nivirpsrsp lwtkeklepn hvregdslvl hcrppvglpp piifwmdnaf
      181 qklpqservs qglngdlyfs nvqpedsred yicyarfnht qtiqqkqpis vkvfstksvt
      241 erqpvlltpt gststkvelr gnvlllecia aglptpvirw ikeggelpan rtffenfkkt
      301 lkiidvsead sgnykciarn tlgsvhhvis vtvkaapywi taprnlvlsp gedgtlicra
      361 ngnpkpnisw langvpiaia pedpsrkvdg dtiifshvqe rssavyqcna sneygyllan
      421 afvnvlaepp riltpadkly qviadspall dcayfgspkp eiewfkgvkg silrgseyif
      481 hyngtleipv aqkdssgtyt cvarnelgki qnevqlevkd ptmiikqpey kviqrygqvs
      541 feciikhdst llptviwlkd ndvlpdderf lvgkdnltim nvtdkddgty tcvvnttlds
      601 vsasavltvv aapptpaiiy arpnppfdle ltgqlersie lswipgdenn spitnfviey
      661 edglhepgvw hhqtevpgtq ttvhlklspy vnysfrviav neigrsqpse pseqyltksa
      721 spdenpsnvq gigsepdnlv itwesltdfq sngpglqykv swrqkdvdde wtsvivanvs
      781 kyivsgtptf vpyeikvqal ndlgyapeps evighsgedl pmvapgnvqv hvinstlakv
      841 hwdpvplksv rghlqgykvy ywkvqslsrr srrhveknil tfrgnktfgm lpglepyssy
      901 klnvrvvngk gegpaspdkv fktpegvpss psflkitnpt ldsltlewgs pihpngvlts
      961 yilkfqpinn thelgplvei ripanessli lknlnystry kfyfnaqtsv gsgsqiteea
     1021 vtimdevqpl yprirnitta aaetyanisw eyegpdhtnf yveygvagsk edwkkeivng
     1081 srsffvlkgl tpgtaykvrv gaeglsgfrs sedvfetgpa masrqvdiat qgwfiglmca
     1141 vallililli vcfirrnkgg kypvkekeda hadpeiqpmk eddgtfgeyr sisawtgkkl
     1201 dkekkrkgsc assseadpvf tkpksvrsdr ssffrrsgdq ysstrsetsy trrkarqsse
     1261 ltrvssvsas lcqekkksde wkyrrgsrhh aseqqimgse egsdsqagqp spfqqplscn
     1321 sihgsmkkqh slqhwfsqsp dhssdsedtq ssyhrkvrps tttcfsesek nslmksvilp
     1381 elatvlknal taarqsitsv aqarshsvkh prgpvteipv vpleatgsss qtfesdhmds
     1441 skgwtssgke khkadkalev esspededvs sesptedqee gpdpvrkfdm enqnflfkhi
     1501 krvlmlkysk secaseelpi pseegkvdna lpihsavedl vcriwgnpea kheapavlhk
     1561 lyplpvdkaa lwgnlpkvdr alvtddsvls vpanrdvfpk dptdrkveea ikrsfklvaa
     1621 qlgvsiycty tskalliwle eerarckkkw vssgamqrkr rlckiaanfi hdaaedslrl
     1681 tvknmacltv awraiwlrpw tssldltckl lslpytggkl fgdslvqimk dfserrcslr
     1741 qlkkkssvrs ssfcyphkcl ssfrsppkfk grkgkykssq lfhakyerts lfqrdtkssr
     1801 gtf
//
LOCUS       XP_053919466            1723 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X18 [Cuculus canorus].
ACCESSION   XP_053919466
VERSION     XP_053919466.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063491.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1723
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1723
                     /product="neuronal cell adhesion molecule isoform X18"
                     /calculated_mol_wt=191857
     Region          35..129
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          35..39
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          44..48
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          53..60
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          66..71
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          74..76
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          83..86
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          108..116
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          119..129
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          138..227
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          152..156
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          166..170
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          189..193
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          204..209
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          220..223
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          265..347
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          277..281
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          290..294
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          312..316
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          326..331
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          339..342
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          351..439
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          367..371
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          380..384
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          404..408
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          418..423
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          431..434
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          443..531
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          461..465
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          474..478
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          497..501
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          511..516
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          524..527
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          537..622
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          552..556
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409359"
     Region          567..572
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409359"
     Region          589..592
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409359"
     Region          596..1054
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          602..607
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409359"
     Region          615..618
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409359"
     Region          636..726
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(636,702,717)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(718..719,721..722)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1075..>1111
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     Region          1441..1650
                     /region_name="LAP2alpha"
                     /note="Lamina-associated polypeptide 2 alpha; pfam11560"
                     /db_xref="CDD:371604"
     CDS             1..1723
                     /gene="NRCAM"
                     /coded_by="XM_054063491.1:47..5218"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld llqpptitqq spkdyivdpr eniviqceak
       61 gkpppsfswt rngthfdidk dalvtmkpns gtlvinimng gkaeayegvy qctarnerga
      121 aisnnivirp srsplwtkek lepnhvregd slvlhcrppv glpppiifwm dnafqklpqs
      181 ervsqglngd lyfsnvqped sredyicyar fnhtqtiqqk qpisvkvfsm dslndtiaan
      241 lsdtdiygak svterqpvll tptgststkv elrgnvllle ciaaglptpv irwikeggel
      301 panrtffenf kktlkiidvs eadsgnykci arntlgsvhh visvtvkaap ywitaprnlv
      361 lspgedgtli crangnpkpn iswlangvpi aiapedpsrk vdgdtiifsh vqerssavyq
      421 cnasneygyl lanafvnvla eppriltpad klyqviadsp alldcayfgs pkpeiewfkg
      481 vkgsilrgse yifhyngtle ipvaqkdssg tytcvarnel gkiqnevqle vkdptmiikq
      541 peykviqryg qvsfeciikh dstllptviw lkdndvlpdd erflvgkdnl timnvtdkdd
      601 gtytcvvntt ldsvsasavl tvvaapptpa iiyarpnppf dleltgqler sielswipgd
      661 ennspitnfv ieyedglhep gvwhhqtevp gtqttvhlkl spyvnysfrv iavneigrsq
      721 psepseqylt ksaspdenps nvqgigsepd nlvitweslt dfqsngpglq ykvswrqkdv
      781 ddewtsviva nvskyivsgt ptfvpyeikv qalndlgyap epsevighsg edlpmvapgn
      841 vqvhvinstl akvhwdpvpl ksvrghlqgy kvyywkvqsl srrsrrhvek niltfrgnkt
      901 fgmlpglepy ssyklnvrvv ngkgegpasp dkvfktpegv psspsflkit nptldsltle
      961 wgspihpngv ltsyilkfqp innthelgpl veiripanes slilknlnys trykfyfnaq
     1021 tsvgsgsqit eeavtimdea masrqvdiat qgwfiglmca vallililli vcfirrnkgg
     1081 kypvkekeda hadpeiqpmk eddgtfgeyr sisawtgkkl dkekkrkgsc assseadpvf
     1141 tkpksvrsdr ssffrrsgdq ysstrsetsy trrkarqsse ltrvssvsas lcqekkksde
     1201 wkyrrgsrhh aseqqimgse egsdsqagqp spfqqplscn sihgsmkkqh slqhwfsqsp
     1261 dhssdsedtq ssyhrkvrps tttcfsesek nslmksvilp elatvlknal taarqsitsv
     1321 aqarshsvkh prgpvteipv vpleatgsss qtfesdhmds skgwtssgke khkadkalev
     1381 esspededvs sesptedqee gpdpvrkfdm enqnflfkhi krvlmlkysk secaseelpi
     1441 pseegkvdna lpihsavedl vcriwgnpea kheapavlhk lyplpvdkaa lwgnlpkvdr
     1501 alvtddsvls vpanrdvfpk dptdrkveea ikrsfklvaa qlgvsiycty tskalliwle
     1561 eerarckkkw vssgamqrkr rlckiaanfi hdaaedslrl tvknmacltv awraiwlrpw
     1621 tssldltckl lslpytggkl fgdslvqimk dfserrcslr qlkkkssvrs ssfcyphkcl
     1681 ssfrsppkfk grkgkykssq lfhakyerts lfqrdtkssr gtf
//
LOCUS       XP_053919474            1321 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X19 [Cuculus canorus].
ACCESSION   XP_053919474
VERSION     XP_053919474.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063499.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1321
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1321
                     /product="neuronal cell adhesion molecule isoform X19"
                     /calculated_mol_wt=145878
     Region          41..135
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          41..45
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          50..54
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          59..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          72..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          80..82
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          89..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          125..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          144..233
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          195..199
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          210..215
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          271..353
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          283..287
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          296..300
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          318..322
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          332..337
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          345..348
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          357..445
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          373..377
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          386..390
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          410..414
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          424..429
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          437..440
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          449..537
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          467..471
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          480..484
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          503..507
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          517..522
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          530..533
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          543..628
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          558..562
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409359"
     Region          573..578
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409359"
     Region          595..598
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409359"
     Region          608..613
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409359"
     Region          621..624
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409359"
     Region          642..732
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(642,708,723)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          697..1154
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(724..725,727..728)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          843..935
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(931..932,934..935)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Site            order(947,1015,1030)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          948..1032
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(1031..1032,1034..1035)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1208..1297
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     CDS             1..1321
                     /gene="NRCAM"
                     /coded_by="XM_054063499.1:324..4289"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld sklleellqp ptitqqspkd yivdpreniv
       61 iqceakgkpp psfswtrngt hfdidkdalv tmkpnsgtlv inimnggkae ayegvyqcta
      121 rnergaaisn nivirpsrsp lwtkeklepn hvregdslvl hcrppvglpp piifwmdnaf
      181 qklpqservs qglngdlyfs nvqpedsred yicyarfnht qtiqqkqpis vkvfsmdsln
      241 dtiaanlsdt diygaksvte rqpvlltptg ststkvelrg nvllleciaa glptpvirwi
      301 keggelpanr tffenfkktl kiidvseads gnykciarnt lgsvhhvisv tvkaapywit
      361 aprnlvlspg edgtlicran gnpkpniswl angvpiaiap edpsrkvdgd tiifshvqer
      421 ssavyqcnas neygyllana fvnvlaeppr iltpadklyq viadspalld cayfgspkpe
      481 iewfkgvkgs ilrgseyifh yngtleipva qkdssgtytc varnelgkiq nevqlevkdp
      541 tmiikqpeyk viqrygqvsf eciikhdstl lptviwlkdn dvlpdderfl vgkdnltimn
      601 vtdkddgtyt cvvnttldsv sasavltvva apptpaiiya rpnppfdlel tgqlersiel
      661 swipgdenns pitnfvieye dglhepgvwh hqtevpgtqt tvhlklspyv nysfrviavn
      721 eigrsqpsep seqyltksas pdenpsnvqg igsepdnlvi twesltdfqs ngpglqykvs
      781 wrqkdvddew tsvivanvsk yivsgtptfv pyeikvqaln dlgyapepse vighsgedlp
      841 mvapgnvqvh vinstlakvh wdpvplksvr ghlqgykvyy wkvqslsrrs rrhveknilt
      901 frgnktfgml pglepyssyk lnvrvvngkg egpaspdkvf ktpegvpssp sflkitnptl
      961 dsltlewgsp ihpngvltsy ilkfqpinnt helgplveir ipanesslil knlnystryk
     1021 fyfnaqtsvg sgsqiteeav timdeagilr pavgagkgys etlfatspvm htvrptfykv
     1081 qplyprirni ttaaaetyan isweyegpdh tnfyveygva gskedwkkei vngsrsffvl
     1141 kgltpgtayk vrvgaeglsg frssedvfet gpamasrqvd iatqgwfigl mcavallili
     1201 llivcfirrn kggkypvkek edahadpeiq pmkeddgtfg eysdaedhkp lkkgsrtpsd
     1261 rtvkkedsdd slvdygegvn gqfnedgsfi gqysgkkeke paegnessea pspvnamnsf
     1321 v
//
LOCUS       XP_053919483            1299 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X20 [Cuculus canorus].
ACCESSION   XP_053919483
VERSION     XP_053919483.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063508.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1299
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1299
                     /product="neuronal cell adhesion molecule isoform X20"
                     /calculated_mol_wt=143363
     Region          41..135
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          41..45
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          50..54
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          59..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          72..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          80..82
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          89..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          125..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          144..233
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          195..199
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          210..215
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          271..353
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          283..287
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          296..300
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          318..322
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          332..337
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          345..348
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          357..445
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          373..377
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          386..390
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          410..414
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          424..429
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          437..440
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          449..537
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          467..471
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          480..484
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          503..507
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          517..522
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          530..533
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          543..628
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          558..562
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          573..578
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          595..598
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          602..1133
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          608..613
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          621..624
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          642..732
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(642,708,723)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(724..725,727..728)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1186..1275
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     CDS             1..1299
                     /gene="NRCAM"
                     /coded_by="XM_054063508.1:324..4223"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld sklleellqp ptitqqspkd yivdpreniv
       61 iqceakgkpp psfswtrngt hfdidkdalv tmkpnsgtlv inimnggkae ayegvyqcta
      121 rnergaaisn nivirpsrsp lwtkeklepn hvregdslvl hcrppvglpp piifwmdnaf
      181 qklpqservs qglngdlyfs nvqpedsred yicyarfnht qtiqqkqpis vkvfsmdsln
      241 dtiaanlsdt diygaksvte rqpvlltptg ststkvelrg nvllleciaa glptpvirwi
      301 keggelpanr tffenfkktl kiidvseads gnykciarnt lgsvhhvisv tvkaapywit
      361 aprnlvlspg edgtlicran gnpkpniswl angvpiaiap edpsrkvdgd tiifshvqer
      421 ssavyqcnas neygyllana fvnvlaeppr iltpadklyq viadspalld cayfgspkpe
      481 iewfkgvkgs ilrgseyifh yngtleipva qkdssgtytc varnelgkiq nevqlevkdp
      541 tmiikqpeyk viqrygqvsf eciikhdstl lptviwlkdn dvlpdderfl vgkdnltimn
      601 vtdkddgtyt cvvnttldsv sasavltvva apptpaiiya rpnppfdlel tgqlersiel
      661 swipgdenns pitnfvieye dglhepgvwh hqtevpgtqt tvhlklspyv nysfrviavn
      721 eigrsqpsep seqyltksas pdenpsnvqg igsepdnlvi twesltdfqs ngpglqykvs
      781 wrqkdvddew tsvivanvsk yivsgtptfv pyeikvqaln dlgyapepse vighsgedlp
      841 mvapgnvqvh vinstlakvh wdpvplksvr ghlqgykvyy wkvqslsrrs rrhveknilt
      901 frgnktfgml pglepyssyk lnvrvvngkg egpaspdkvf ktpegvpssp sflkitnptl
      961 dsltlewgsp ihpngvltsy ilkfqpinnt helgplveir ipanesslil knlnystryk
     1021 fyfnaqtsvg sgsqiteeav timdeagilr pavgagkvqp lyprirnitt aaaetyanis
     1081 weyegpdhtn fyveygvags kedwkkeivn gsrsffvlkg ltpgtaykvr vgaeglsgfr
     1141 ssedvfetgp amasrqvdia tqgwfiglmc avallilill ivcfirrnkg gkypvkeked
     1201 ahadpeiqpm keddgtfgey sdaedhkplk kgsrtpsdrt vkkedsddsl vdygegvngq
     1261 fnedgsfigq ysgkkekepa egnesseaps pvnamnsfv
//
LOCUS       XP_053919489            1280 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X21 [Cuculus canorus].
ACCESSION   XP_053919489
VERSION     XP_053919489.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063514.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1280
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1280
                     /product="neuronal cell adhesion molecule isoform X21"
                     /calculated_mol_wt=141382
     Region          41..135
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          41..45
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          50..54
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          59..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          72..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          80..82
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          89..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          125..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          144..233
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          195..199
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          210..215
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          252..334
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          264..268
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          277..281
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          299..303
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          313..318
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          326..329
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          338..426
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          354..358
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          367..371
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          391..395
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          405..410
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          418..421
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          430..518
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          448..452
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          461..465
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          484..488
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          498..503
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          511..514
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          524..609
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          539..543
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409359"
     Region          554..559
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409359"
     Region          576..579
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409359"
     Region          583..1114
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          589..594
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409359"
     Region          602..605
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409359"
     Region          623..713
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(623,689,704)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(705..706,708..709)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1167..1256
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     CDS             1..1280
                     /gene="NRCAM"
                     /coded_by="XM_054063514.1:324..4166"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld sklleellqp ptitqqspkd yivdpreniv
       61 iqceakgkpp psfswtrngt hfdidkdalv tmkpnsgtlv inimnggkae ayegvyqcta
      121 rnergaaisn nivirpsrsp lwtkeklepn hvregdslvl hcrppvglpp piifwmdnaf
      181 qklpqservs qglngdlyfs nvqpedsred yicyarfnht qtiqqkqpis vkvfstksvt
      241 erqpvlltpt gststkvelr gnvlllecia aglptpvirw ikeggelpan rtffenfkkt
      301 lkiidvsead sgnykciarn tlgsvhhvis vtvkaapywi taprnlvlsp gedgtlicra
      361 ngnpkpnisw langvpiaia pedpsrkvdg dtiifshvqe rssavyqcna sneygyllan
      421 afvnvlaepp riltpadkly qviadspall dcayfgspkp eiewfkgvkg silrgseyif
      481 hyngtleipv aqkdssgtyt cvarnelgki qnevqlevkd ptmiikqpey kviqrygqvs
      541 feciikhdst llptviwlkd ndvlpdderf lvgkdnltim nvtdkddgty tcvvnttlds
      601 vsasavltvv aapptpaiiy arpnppfdle ltgqlersie lswipgdenn spitnfviey
      661 edglhepgvw hhqtevpgtq ttvhlklspy vnysfrviav neigrsqpse pseqyltksa
      721 spdenpsnvq gigsepdnlv itwesltdfq sngpglqykv swrqkdvdde wtsvivanvs
      781 kyivsgtptf vpyeikvqal ndlgyapeps evighsgedl pmvapgnvqv hvinstlakv
      841 hwdpvplksv rghlqgykvy ywkvqslsrr srrhveknil tfrgnktfgm lpglepyssy
      901 klnvrvvngk gegpaspdkv fktpegvpss psflkitnpt ldsltlewgs pihpngvlts
      961 yilkfqpinn thelgplvei ripanessli lknlnystry kfyfnaqtsv gsgsqiteea
     1021 vtimdeagil rpavgagkvq plyprirnit taaaetyani sweyegpdht nfyveygvag
     1081 skedwkkeiv ngsrsffvlk gltpgtaykv rvgaeglsgf rssedvfetg pamasrqvdi
     1141 atqgwfiglm cavallilil livcfirrnk ggkypvkeke dahadpeiqp mkeddgtfge
     1201 ysdaedhkpl kkgsrtpsdr tvkkedsdds lvdygegvng qfnedgsfig qysgkkekep
     1261 aegnesseap spvnamnsfv
//
LOCUS       XP_053919496            1268 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X22 [Cuculus canorus].
ACCESSION   XP_053919496
VERSION     XP_053919496.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063521.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1268
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1268
                     /product="neuronal cell adhesion molecule isoform X22"
                     /calculated_mol_wt=140290
     Region          41..135
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          41..45
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          50..54
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          59..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          72..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          80..82
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          89..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          125..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          144..233
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          195..199
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          210..215
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          252..334
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          264..268
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          277..281
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          299..303
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          313..318
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          326..329
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          338..426
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          354..358
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          367..371
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          391..395
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          405..410
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          418..421
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          430..518
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          448..452
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          461..465
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          484..488
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          498..503
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          511..514
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          524..609
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          539..543
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          554..559
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          576..579
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          583..1102
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          589..594
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          602..605
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          623..713
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(623,689,704)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(705..706,708..709)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1155..1244
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     CDS             1..1268
                     /gene="NRCAM"
                     /coded_by="XM_054063521.1:324..4130"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld sklleellqp ptitqqspkd yivdpreniv
       61 iqceakgkpp psfswtrngt hfdidkdalv tmkpnsgtlv inimnggkae ayegvyqcta
      121 rnergaaisn nivirpsrsp lwtkeklepn hvregdslvl hcrppvglpp piifwmdnaf
      181 qklpqservs qglngdlyfs nvqpedsred yicyarfnht qtiqqkqpis vkvfstksvt
      241 erqpvlltpt gststkvelr gnvlllecia aglptpvirw ikeggelpan rtffenfkkt
      301 lkiidvsead sgnykciarn tlgsvhhvis vtvkaapywi taprnlvlsp gedgtlicra
      361 ngnpkpnisw langvpiaia pedpsrkvdg dtiifshvqe rssavyqcna sneygyllan
      421 afvnvlaepp riltpadkly qviadspall dcayfgspkp eiewfkgvkg silrgseyif
      481 hyngtleipv aqkdssgtyt cvarnelgki qnevqlevkd ptmiikqpey kviqrygqvs
      541 feciikhdst llptviwlkd ndvlpdderf lvgkdnltim nvtdkddgty tcvvnttlds
      601 vsasavltvv aapptpaiiy arpnppfdle ltgqlersie lswipgdenn spitnfviey
      661 edglhepgvw hhqtevpgtq ttvhlklspy vnysfrviav neigrsqpse pseqyltksa
      721 spdenpsnvq gigsepdnlv itwesltdfq sngpglqykv swrqkdvdde wtsvivanvs
      781 kyivsgtptf vpyeikvqal ndlgyapeps evighsgedl pmvapgnvqv hvinstlakv
      841 hwdpvplksv rghlqgykvy ywkvqslsrr srrhveknil tfrgnktfgm lpglepyssy
      901 klnvrvvngk gegpaspdkv fktpegvpss psflkitnpt ldsltlewgs pihpngvlts
      961 yilkfqpinn thelgplvei ripanessli lknlnystry kfyfnaqtsv gsgsqiteea
     1021 vtimdevqpl yprirnitta aaetyanisw eyegpdhtnf yveygvagsk edwkkeivng
     1081 srsffvlkgl tpgtaykvrv gaeglsgfrs sedvfetgpa masrqvdiat qgwfiglmca
     1141 vallililli vcfirrnkgg kypvkekeda hadpeiqpmk eddgtfgeys daedhkplkk
     1201 gsrtpsdrtv kkedsddslv dygegvngqf nedgsfigqy sgkkekepae gnesseapsp
     1261 vnamnsfv
//
LOCUS       XP_053919507            1253 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X23 [Cuculus canorus].
ACCESSION   XP_053919507
VERSION     XP_053919507.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063532.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1253
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1253
                     /product="neuronal cell adhesion molecule isoform X23"
                     /calculated_mol_wt=138612
     Region          41..135
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          41..45
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          50..54
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          59..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          72..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          80..82
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          89..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          125..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          144..233
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          195..199
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          210..215
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          271..353
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          283..287
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          296..300
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          318..322
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          332..337
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          345..348
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          357..445
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          373..377
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          386..390
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          410..414
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          424..429
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          437..440
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          449..537
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          467..471
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          480..484
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          503..507
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          517..522
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          530..533
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          543..628
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          558..562
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409359"
     Region          573..578
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409359"
     Region          595..598
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409359"
     Region          608..613
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409359"
     Region          621..624
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409359"
     Region          642..732
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(642,708,723)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          697..1154
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(724..725,727..728)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          843..935
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(931..932,934..935)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Site            order(947,1015,1030)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          948..1032
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(1031..1032,1034..1035)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1208..>1243
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     CDS             1..1253
                     /gene="NRCAM"
                     /coded_by="XM_054063532.1:324..4085"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld sklleellqp ptitqqspkd yivdpreniv
       61 iqceakgkpp psfswtrngt hfdidkdalv tmkpnsgtlv inimnggkae ayegvyqcta
      121 rnergaaisn nivirpsrsp lwtkeklepn hvregdslvl hcrppvglpp piifwmdnaf
      181 qklpqservs qglngdlyfs nvqpedsred yicyarfnht qtiqqkqpis vkvfsmdsln
      241 dtiaanlsdt diygaksvte rqpvlltptg ststkvelrg nvllleciaa glptpvirwi
      301 keggelpanr tffenfkktl kiidvseads gnykciarnt lgsvhhvisv tvkaapywit
      361 aprnlvlspg edgtlicran gnpkpniswl angvpiaiap edpsrkvdgd tiifshvqer
      421 ssavyqcnas neygyllana fvnvlaeppr iltpadklyq viadspalld cayfgspkpe
      481 iewfkgvkgs ilrgseyifh yngtleipva qkdssgtytc varnelgkiq nevqlevkdp
      541 tmiikqpeyk viqrygqvsf eciikhdstl lptviwlkdn dvlpdderfl vgkdnltimn
      601 vtdkddgtyt cvvnttldsv sasavltvva apptpaiiya rpnppfdlel tgqlersiel
      661 swipgdenns pitnfvieye dglhepgvwh hqtevpgtqt tvhlklspyv nysfrviavn
      721 eigrsqpsep seqyltksas pdenpsnvqg igsepdnlvi twesltdfqs ngpglqykvs
      781 wrqkdvddew tsvivanvsk yivsgtptfv pyeikvqaln dlgyapepse vighsgedlp
      841 mvapgnvqvh vinstlakvh wdpvplksvr ghlqgykvyy wkvqslsrrs rrhveknilt
      901 frgnktfgml pglepyssyk lnvrvvngkg egpaspdkvf ktpegvpssp sflkitnptl
      961 dsltlewgsp ihpngvltsy ilkfqpinnt helgplveir ipanesslil knlnystryk
     1021 fyfnaqtsvg sgsqiteeav timdeagilr pavgagkgys etlfatspvm htvrptfykv
     1081 qplyprirni ttaaaetyan isweyegpdh tnfyveygva gskedwkkei vngsrsffvl
     1141 kgltpgtayk vrvgaeglsg frssedvfet gpamasrqvd iatqgwfigl mcavallili
     1201 llivcfirrn kggkypvkek edahadpeiq pmkeddgtfg eyrlfsfvss apf
//
LOCUS       XP_053919517            1194 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X24 [Cuculus canorus].
ACCESSION   XP_053919517
VERSION     XP_053919517.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063542.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1194
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1194
                     /product="neuronal cell adhesion molecule isoform X24"
                     /calculated_mol_wt=131964
     Region          41..135
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          41..45
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          50..54
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          59..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          72..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          80..82
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          89..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          125..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          144..233
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          195..199
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          210..215
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          271..353
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          283..287
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          296..300
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          318..322
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          332..337
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          345..348
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          357..445
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          373..377
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          386..390
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          410..414
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          424..429
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          437..440
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          449..537
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          467..471
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          480..484
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          503..507
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          517..522
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          530..533
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          543..628
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          558..562
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409359"
     Region          573..578
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409359"
     Region          595..598
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409359"
     Region          602..1060
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          608..613
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409359"
     Region          621..624
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409359"
     Region          642..732
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(642,708,723)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(724..725,727..728)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Site            order(947,1015,1030)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          948..1032
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(1031..1032,1034..1035)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1081..1170
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     CDS             1..1194
                     /gene="NRCAM"
                     /coded_by="XM_054063542.1:324..3908"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld sklleellqp ptitqqspkd yivdpreniv
       61 iqceakgkpp psfswtrngt hfdidkdalv tmkpnsgtlv inimnggkae ayegvyqcta
      121 rnergaaisn nivirpsrsp lwtkeklepn hvregdslvl hcrppvglpp piifwmdnaf
      181 qklpqservs qglngdlyfs nvqpedsred yicyarfnht qtiqqkqpis vkvfsmdsln
      241 dtiaanlsdt diygaksvte rqpvlltptg ststkvelrg nvllleciaa glptpvirwi
      301 keggelpanr tffenfkktl kiidvseads gnykciarnt lgsvhhvisv tvkaapywit
      361 aprnlvlspg edgtlicran gnpkpniswl angvpiaiap edpsrkvdgd tiifshvqer
      421 ssavyqcnas neygyllana fvnvlaeppr iltpadklyq viadspalld cayfgspkpe
      481 iewfkgvkgs ilrgseyifh yngtleipva qkdssgtytc varnelgkiq nevqlevkdp
      541 tmiikqpeyk viqrygqvsf eciikhdstl lptviwlkdn dvlpdderfl vgkdnltimn
      601 vtdkddgtyt cvvnttldsv sasavltvva apptpaiiya rpnppfdlel tgqlersiel
      661 swipgdenns pitnfvieye dglhepgvwh hqtevpgtqt tvhlklspyv nysfrviavn
      721 eigrsqpsep seqyltksas pdenpsnvqg igsepdnlvi twesltdfqs ngpglqykvs
      781 wrqkdvddew tsvivanvsk yivsgtptfv pyeikvqaln dlgyapepse vighsgedlp
      841 mvapgnvqvh vinstlakvh wdpvplksvr ghlqgykvyy wkvqslsrrs rrhveknilt
      901 frgnktfgml pglepyssyk lnvrvvngkg egpaspdkvf ktpegvpssp sflkitnptl
      961 dsltlewgsp ihpngvltsy ilkfqpinnt helgplveir ipanesslil knlnystryk
     1021 fyfnaqtsvg sgsqiteeav timdeamasr qvdiatqgwf iglmcavall ilillivcfi
     1081 rrnkggkypv kekedahadp eiqpmkeddg tfgeysdaed hkplkkgsrt psdrtvkked
     1141 sddslvdyge gvngqfnedg sfigqysgkk ekepaegnes seapspvnam nsfv
//
LOCUS       XP_053919526            1184 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X25 [Cuculus canorus].
ACCESSION   XP_053919526
VERSION     XP_053919526.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063551.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1184
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1184
                     /product="neuronal cell adhesion molecule isoform X25"
                     /calculated_mol_wt=130969
     Region          41..135
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          41..45
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          50..54
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          59..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          72..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          80..82
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          89..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          125..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          144..233
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          195..199
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          210..215
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          271..353
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          283..287
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          296..300
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          318..322
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          332..337
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          345..348
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          357..445
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          373..377
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          386..390
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          410..414
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          424..429
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          437..440
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          449..537
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          467..471
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          480..484
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          503..507
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          517..522
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          530..533
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          543..628
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          558..562
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          573..577
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          <594..>822
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          595..598
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          608..613
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          621..624
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          632..722
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(632,698,713)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(714..715,717..718)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          833..925
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(921..922,924..925)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Site            order(937,1005,1020)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          938..1022
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(1021..1022,1024..1025)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1071..1160
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     CDS             1..1184
                     /gene="NRCAM"
                     /coded_by="XM_054063551.1:324..3878"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld sklleellqp ptitqqspkd yivdpreniv
       61 iqceakgkpp psfswtrngt hfdidkdalv tmkpnsgtlv inimnggkae ayegvyqcta
      121 rnergaaisn nivirpsrsp lwtkeklepn hvregdslvl hcrppvglpp piifwmdnaf
      181 qklpqservs qglngdlyfs nvqpedsred yicyarfnht qtiqqkqpis vkvfsmdsln
      241 dtiaanlsdt diygaksvte rqpvlltptg ststkvelrg nvllleciaa glptpvirwi
      301 keggelpanr tffenfkktl kiidvseads gnykciarnt lgsvhhvisv tvkaapywit
      361 aprnlvlspg edgtlicran gnpkpniswl angvpiaiap edpsrkvdgd tiifshvqer
      421 ssavyqcnas neygyllana fvnvlaeppr iltpadklyq viadspalld cayfgspkpe
      481 iewfkgvkgs ilrgseyifh yngtleipva qkdssgtytc varnelgkiq nevqlevkdp
      541 tmiikqpeyk viqrygqvsf eciikhdstl lptviwlkdn dvlpdderfl vgkdnltimn
      601 vtdkddgtyt cvvnttldsv sasavltvva rpnppfdlel tgqlersiel swipgdenns
      661 pitnfvieye dglhepgvwh hqtevpgtqt tvhlklspyv nysfrviavn eigrsqpsep
      721 seqyltksas pdenpsnvqg igsepdnlvi twesltdfqs ngpglqykvs wrqkdvddew
      781 tsvivanvsk yivsgtptfv pyeikvqaln dlgyapepse vighsgedlp mvapgnvqvh
      841 vinstlakvh wdpvplksvr ghlqgykvyy wkvqslsrrs rrhveknilt frgnktfgml
      901 pglepyssyk lnvrvvngkg egpaspdkvf ktpegvpssp sflkitnptl dsltlewgsp
      961 ihpngvltsy ilkfqpinnt helgplveir ipanesslil knlnystryk fyfnaqtsvg
     1021 sgsqiteeav timdeamasr qvdiatqgwf iglmcavall ilillivcfi rrnkggkypv
     1081 kekedahadp eiqpmkeddg tfgeysdaed hkplkkgsrt psdrtvkked sddslvdyge
     1141 gvngqfnedg sfigqysgkk ekepaegnes seapspvnam nsfv
//
LOCUS       XP_053919533            1178 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X26 [Cuculus canorus].
ACCESSION   XP_053919533
VERSION     XP_053919533.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063558.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1178
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1178
                     /product="neuronal cell adhesion molecule isoform X26"
                     /calculated_mol_wt=130299
     Region          41..135
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          41..45
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          50..54
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          59..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          72..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          80..82
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          89..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          125..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          144..233
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          195..199
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          210..215
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          252..334
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          264..268
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          277..281
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          299..303
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          313..318
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          326..329
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          338..426
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          354..358
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          367..371
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          391..395
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          405..410
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          418..421
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          430..518
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          448..452
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          461..465
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          484..488
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          498..503
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          511..514
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          524..609
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          539..543
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409359"
     Region          554..559
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409359"
     Region          576..579
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409359"
     Region          583..1022
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          589..594
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409359"
     Region          602..605
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409359"
     Region          623..713
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(623,689,704)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(705..706,708..709)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Site            order(928,996,1011)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          929..1013
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(1012..1013,1015..1016)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1065..1154
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     CDS             1..1178
                     /gene="NRCAM"
                     /coded_by="XM_054063558.1:324..3860"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld sklleellqp ptitqqspkd yivdpreniv
       61 iqceakgkpp psfswtrngt hfdidkdalv tmkpnsgtlv inimnggkae ayegvyqcta
      121 rnergaaisn nivirpsrsp lwtkeklepn hvregdslvl hcrppvglpp piifwmdnaf
      181 qklpqservs qglngdlyfs nvqpedsred yicyarfnht qtiqqkqpis vkvfstksvt
      241 erqpvlltpt gststkvelr gnvlllecia aglptpvirw ikeggelpan rtffenfkkt
      301 lkiidvsead sgnykciarn tlgsvhhvis vtvkaapywi taprnlvlsp gedgtlicra
      361 ngnpkpnisw langvpiaia pedpsrkvdg dtiifshvqe rssavyqcna sneygyllan
      421 afvnvlaepp riltpadkly qviadspall dcayfgspkp eiewfkgvkg silrgseyif
      481 hyngtleipv aqkdssgtyt cvarnelgki qnevqlevkd ptmiikqpey kviqrygqvs
      541 feciikhdst llptviwlkd ndvlpdderf lvgkdnltim nvtdkddgty tcvvnttlds
      601 vsasavltvv aapptpaiiy arpnppfdle ltgqlersie lswipgdenn spitnfviey
      661 edglhepgvw hhqtevpgtq ttvhlklspy vnysfrviav neigrsqpse pseqyltksa
      721 spdenpsnvq gigsepdnlv itwesltdfq sngpglqykv swrqkdvdde wtsvivanvs
      781 kyivsgtptf vpyeikvqal ndlgyapeps evighsgedl pmvapgnvqv hvinstlakv
      841 hwdpvplksv rghlqgykvy ywkvqslsrr srrhveknil tfrgnktfgm lpglepyssy
      901 klnvrvvngk gegpaspdkv fktpegvpss psflkitnpt ldsltlewgs pihpngvlts
      961 yilkfqpinn thelgplvei ripanessli lknlnystry kfyfnaqtsv gsgsqiteea
     1021 vtimdegkma masrqvdiat qgwfiglmca vallililli vcfirrnkgg kypvkekeda
     1081 hadpeiqpmk eddgtfgeys daedhkplkk gsrtpsdrtv kkedsddslv dygegvngqf
     1141 nedgsfigqy sgkkekepae gnesseapsp vnamnsfv
//
LOCUS       XP_053919541            1178 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X27 [Cuculus canorus].
ACCESSION   XP_053919541
VERSION     XP_053919541.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063566.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1178
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1178
                     /product="neuronal cell adhesion molecule isoform X27"
                     /calculated_mol_wt=130269
     Region          35..129
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          35..39
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          44..48
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          53..60
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          66..71
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          74..76
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          83..86
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          108..116
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          119..129
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          138..227
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          152..156
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          166..170
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          189..193
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          204..209
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          220..223
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          265..347
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          277..281
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          290..294
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          312..316
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          326..331
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          339..342
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          351..439
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          367..371
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          380..384
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          404..408
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          418..423
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          431..434
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          443..531
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          461..465
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          474..478
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          497..501
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          511..516
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          524..527
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          537..622
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          552..556
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          567..571
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          <588..>816
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          589..592
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          602..607
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          615..618
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          626..716
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(626,692,707)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(708..709,711..712)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          827..919
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(915..916,918..919)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Site            order(931,999,1014)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          932..1016
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(1015..1016,1018..1019)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1065..1154
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     CDS             1..1178
                     /gene="NRCAM"
                     /coded_by="XM_054063566.1:324..3860"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld llqpptitqq spkdyivdpr eniviqceak
       61 gkpppsfswt rngthfdidk dalvtmkpns gtlvinimng gkaeayegvy qctarnerga
      121 aisnnivirp srsplwtkek lepnhvregd slvlhcrppv glpppiifwm dnafqklpqs
      181 ervsqglngd lyfsnvqped sredyicyar fnhtqtiqqk qpisvkvfsm dslndtiaan
      241 lsdtdiygak svterqpvll tptgststkv elrgnvllle ciaaglptpv irwikeggel
      301 panrtffenf kktlkiidvs eadsgnykci arntlgsvhh visvtvkaap ywitaprnlv
      361 lspgedgtli crangnpkpn iswlangvpi aiapedpsrk vdgdtiifsh vqerssavyq
      421 cnasneygyl lanafvnvla eppriltpad klyqviadsp alldcayfgs pkpeiewfkg
      481 vkgsilrgse yifhyngtle ipvaqkdssg tytcvarnel gkiqnevqle vkdptmiikq
      541 peykviqryg qvsfeciikh dstllptviw lkdndvlpdd erflvgkdnl timnvtdkdd
      601 gtytcvvntt ldsvsasavl tvvarpnppf dleltgqler sielswipgd ennspitnfv
      661 ieyedglhep gvwhhqtevp gtqttvhlkl spyvnysfrv iavneigrsq psepseqylt
      721 ksaspdenps nvqgigsepd nlvitweslt dfqsngpglq ykvswrqkdv ddewtsviva
      781 nvskyivsgt ptfvpyeikv qalndlgyap epsevighsg edlpmvapgn vqvhvinstl
      841 akvhwdpvpl ksvrghlqgy kvyywkvqsl srrsrrhvek niltfrgnkt fgmlpglepy
      901 ssyklnvrvv ngkgegpasp dkvfktpegv psspsflkit nptldsltle wgspihpngv
      961 ltsyilkfqp innthelgpl veiripanes slilknlnys trykfyfnaq tsvgsgsqit
     1021 eeavtimdea masrqvdiat qgwfiglmca vallililli vcfirrnkgg kypvkekeda
     1081 hadpeiqpmk eddgtfgeys daedhkplkk gsrtpsdrtv kkedsddslv dygegvngqf
     1141 nedgsfigqy sgkkekepae gnesseapsp vnamnsfv
//
LOCUS       XP_053919545            1287 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X28 [Cuculus canorus].
ACCESSION   XP_053919545
VERSION     XP_053919545.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063570.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1287
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1287
                     /product="neuronal cell adhesion molecule isoform X28"
                     /calculated_mol_wt=142272
     Region          41..135
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          41..45
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          50..54
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          59..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          72..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          80..82
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          89..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          125..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          144..233
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          195..199
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          210..215
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          271..353
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          283..287
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          296..300
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          318..322
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          332..337
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          345..348
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          357..445
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          373..377
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          386..390
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          410..414
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          424..429
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          437..440
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          449..537
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          467..471
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          480..484
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          503..507
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          517..522
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          530..533
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          543..628
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          558..562
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409359"
     Region          573..578
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409359"
     Region          595..598
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409359"
     Region          602..1121
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          608..613
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409359"
     Region          621..624
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409359"
     Region          642..732
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(642,708,723)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(724..725,727..728)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1174..1263
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     CDS             1..1287
                     /gene="NRCAM"
                     /coded_by="XM_054063570.1:47..3910"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld sklleellqp ptitqqspkd yivdpreniv
       61 iqceakgkpp psfswtrngt hfdidkdalv tmkpnsgtlv inimnggkae ayegvyqcta
      121 rnergaaisn nivirpsrsp lwtkeklepn hvregdslvl hcrppvglpp piifwmdnaf
      181 qklpqservs qglngdlyfs nvqpedsred yicyarfnht qtiqqkqpis vkvfsmdsln
      241 dtiaanlsdt diygaksvte rqpvlltptg ststkvelrg nvllleciaa glptpvirwi
      301 keggelpanr tffenfkktl kiidvseads gnykciarnt lgsvhhvisv tvkaapywit
      361 aprnlvlspg edgtlicran gnpkpniswl angvpiaiap edpsrkvdgd tiifshvqer
      421 ssavyqcnas neygyllana fvnvlaeppr iltpadklyq viadspalld cayfgspkpe
      481 iewfkgvkgs ilrgseyifh yngtleipva qkdssgtytc varnelgkiq nevqlevkdp
      541 tmiikqpeyk viqrygqvsf eciikhdstl lptviwlkdn dvlpdderfl vgkdnltimn
      601 vtdkddgtyt cvvnttldsv sasavltvva apptpaiiya rpnppfdlel tgqlersiel
      661 swipgdenns pitnfvieye dglhepgvwh hqtevpgtqt tvhlklspyv nysfrviavn
      721 eigrsqpsep seqyltksas pdenpsnvqg igsepdnlvi twesltdfqs ngpglqykvs
      781 wrqkdvddew tsvivanvsk yivsgtptfv pyeikvqaln dlgyapepse vighsgedlp
      841 mvapgnvqvh vinstlakvh wdpvplksvr ghlqgykvyy wkvqslsrrs rrhveknilt
      901 frgnktfgml pglepyssyk lnvrvvngkg egpaspdkvf ktpegvpssp sflkitnptl
      961 dsltlewgsp ihpngvltsy ilkfqpinnt helgplveir ipanesslil knlnystryk
     1021 fyfnaqtsvg sgsqiteeav timdevqply prirnittaa aetyaniswe yegpdhtnfy
     1081 veygvagske dwkkeivngs rsffvlkglt pgtaykvrvg aeglsgfrss edvfetgpam
     1141 asrqvdiatq gwfiglmcav allililliv cfirrnkggk ypvkekedah adpeiqpmke
     1201 ddgtfgeysd aedhkplkkg srtpsdrtvk kedsddslvd ygegvngqfn edgsfigqys
     1261 gkkekepaeg nesseapspv namnsfv
//
LOCUS       XP_053919552            1187 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X29 [Cuculus canorus].
ACCESSION   XP_053919552
VERSION     XP_053919552.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063577.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1187
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1187
                     /product="neuronal cell adhesion molecule isoform X29"
                     /calculated_mol_wt=131285
     Region          41..135
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          41..45
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          50..54
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          59..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          72..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          80..82
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          89..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          125..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          144..233
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          195..199
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          210..215
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          271..353
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          283..287
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          296..300
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          318..322
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          332..337
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          345..348
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          357..445
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          373..377
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          386..390
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          410..414
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          424..429
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          437..440
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          449..537
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          467..471
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          480..484
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          503..507
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          517..522
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          530..533
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          543..628
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          558..562
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          573..577
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          <594..>822
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          595..598
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          608..613
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          621..624
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          632..722
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(632,698,713)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(714..715,717..718)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          833..925
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(921..922,924..925)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Site            order(937,1005,1020)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          938..1022
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(1021..1022,1024..1025)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1074..1163
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     CDS             1..1187
                     /gene="NRCAM"
                     /coded_by="XM_054063577.1:47..3610"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld sklleellqp ptitqqspkd yivdpreniv
       61 iqceakgkpp psfswtrngt hfdidkdalv tmkpnsgtlv inimnggkae ayegvyqcta
      121 rnergaaisn nivirpsrsp lwtkeklepn hvregdslvl hcrppvglpp piifwmdnaf
      181 qklpqservs qglngdlyfs nvqpedsred yicyarfnht qtiqqkqpis vkvfsmdsln
      241 dtiaanlsdt diygaksvte rqpvlltptg ststkvelrg nvllleciaa glptpvirwi
      301 keggelpanr tffenfkktl kiidvseads gnykciarnt lgsvhhvisv tvkaapywit
      361 aprnlvlspg edgtlicran gnpkpniswl angvpiaiap edpsrkvdgd tiifshvqer
      421 ssavyqcnas neygyllana fvnvlaeppr iltpadklyq viadspalld cayfgspkpe
      481 iewfkgvkgs ilrgseyifh yngtleipva qkdssgtytc varnelgkiq nevqlevkdp
      541 tmiikqpeyk viqrygqvsf eciikhdstl lptviwlkdn dvlpdderfl vgkdnltimn
      601 vtdkddgtyt cvvnttldsv sasavltvva rpnppfdlel tgqlersiel swipgdenns
      661 pitnfvieye dglhepgvwh hqtevpgtqt tvhlklspyv nysfrviavn eigrsqpsep
      721 seqyltksas pdenpsnvqg igsepdnlvi twesltdfqs ngpglqykvs wrqkdvddew
      781 tsvivanvsk yivsgtptfv pyeikvqaln dlgyapepse vighsgedlp mvapgnvqvh
      841 vinstlakvh wdpvplksvr ghlqgykvyy wkvqslsrrs rrhveknilt frgnktfgml
      901 pglepyssyk lnvrvvngkg egpaspdkvf ktpegvpssp sflkitnptl dsltlewgsp
      961 ihpngvltsy ilkfqpinnt helgplveir ipanesslil knlnystryk fyfnaqtsvg
     1021 sgsqiteeav timdegkmam asrqvdiatq gwfiglmcav allililliv cfirrnkggk
     1081 ypvkekedah adpeiqpmke ddgtfgeysd aedhkplkkg srtpsdrtvk kedsddslvd
     1141 ygegvngqfn edgsfigqys gkkekepaeg nesseapspv namnsfv
//
LOCUS       XP_053919558            1181 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X30 [Cuculus canorus].
ACCESSION   XP_053919558
VERSION     XP_053919558.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063583.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1181
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1181
                     /product="neuronal cell adhesion molecule isoform X30"
                     /calculated_mol_wt=130585
     Region          35..129
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          35..39
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          44..48
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          53..60
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          66..71
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          74..76
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          83..86
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          108..116
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          119..129
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          138..227
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          152..156
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          166..170
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          189..193
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          204..209
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          220..223
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          265..347
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          277..281
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          290..294
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          312..316
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          326..331
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          339..342
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          351..439
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          367..371
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          380..384
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          404..408
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          418..423
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          431..434
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          443..531
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          461..465
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          474..478
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          497..501
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          511..516
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          524..527
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          537..622
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          552..556
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          567..571
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          <588..>816
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          589..592
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          602..607
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          615..618
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          626..716
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(626,692,707)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(708..709,711..712)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          827..919
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(915..916,918..919)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Site            order(931,999,1014)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          932..1016
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(1015..1016,1018..1019)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1068..1157
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     CDS             1..1181
                     /gene="NRCAM"
                     /coded_by="XM_054063583.1:47..3592"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld llqpptitqq spkdyivdpr eniviqceak
       61 gkpppsfswt rngthfdidk dalvtmkpns gtlvinimng gkaeayegvy qctarnerga
      121 aisnnivirp srsplwtkek lepnhvregd slvlhcrppv glpppiifwm dnafqklpqs
      181 ervsqglngd lyfsnvqped sredyicyar fnhtqtiqqk qpisvkvfsm dslndtiaan
      241 lsdtdiygak svterqpvll tptgststkv elrgnvllle ciaaglptpv irwikeggel
      301 panrtffenf kktlkiidvs eadsgnykci arntlgsvhh visvtvkaap ywitaprnlv
      361 lspgedgtli crangnpkpn iswlangvpi aiapedpsrk vdgdtiifsh vqerssavyq
      421 cnasneygyl lanafvnvla eppriltpad klyqviadsp alldcayfgs pkpeiewfkg
      481 vkgsilrgse yifhyngtle ipvaqkdssg tytcvarnel gkiqnevqle vkdptmiikq
      541 peykviqryg qvsfeciikh dstllptviw lkdndvlpdd erflvgkdnl timnvtdkdd
      601 gtytcvvntt ldsvsasavl tvvarpnppf dleltgqler sielswipgd ennspitnfv
      661 ieyedglhep gvwhhqtevp gtqttvhlkl spyvnysfrv iavneigrsq psepseqylt
      721 ksaspdenps nvqgigsepd nlvitweslt dfqsngpglq ykvswrqkdv ddewtsviva
      781 nvskyivsgt ptfvpyeikv qalndlgyap epsevighsg edlpmvapgn vqvhvinstl
      841 akvhwdpvpl ksvrghlqgy kvyywkvqsl srrsrrhvek niltfrgnkt fgmlpglepy
      901 ssyklnvrvv ngkgegpasp dkvfktpegv psspsflkit nptldsltle wgspihpngv
      961 ltsyilkfqp innthelgpl veiripanes slilknlnys trykfyfnaq tsvgsgsqit
     1021 eeavtimdeg kmamasrqvd iatqgwfigl mcavallili llivcfirrn kggkypvkek
     1081 edahadpeiq pmkeddgtfg eysdaedhkp lkkgsrtpsd rtvkkedsdd slvdygegvn
     1141 gqfnedgsfi gqysgkkeke paegnessea pspvnamnsf v
//
LOCUS       XP_009562743            1175 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X31 [Cuculus canorus].
ACCESSION   XP_009562743
VERSION     XP_009562743.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009564448.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1175
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1175
                     /product="neuronal cell adhesion molecule isoform X31"
                     /calculated_mol_wt=129983
     Region          41..135
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          41..45
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          50..54
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          59..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          72..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          80..82
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          89..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          125..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          144..233
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          195..199
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          210..215
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          252..334
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          264..268
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          277..281
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          299..303
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          313..318
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          326..329
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          338..426
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          354..358
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          367..371
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          391..395
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          405..410
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          418..421
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          430..518
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          448..452
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          461..465
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          484..488
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          498..503
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          511..514
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          524..609
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          539..543
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          554..559
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          576..579
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          583..1041
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          589..594
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          602..605
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          623..713
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(623,689,704)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(705..706,708..709)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1062..1151
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     CDS             1..1175
                     /gene="NRCAM"
                     /coded_by="XM_009564448.2:47..3574"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld sklleellqp ptitqqspkd yivdpreniv
       61 iqceakgkpp psfswtrngt hfdidkdalv tmkpnsgtlv inimnggkae ayegvyqcta
      121 rnergaaisn nivirpsrsp lwtkeklepn hvregdslvl hcrppvglpp piifwmdnaf
      181 qklpqservs qglngdlyfs nvqpedsred yicyarfnht qtiqqkqpis vkvfstksvt
      241 erqpvlltpt gststkvelr gnvlllecia aglptpvirw ikeggelpan rtffenfkkt
      301 lkiidvsead sgnykciarn tlgsvhhvis vtvkaapywi taprnlvlsp gedgtlicra
      361 ngnpkpnisw langvpiaia pedpsrkvdg dtiifshvqe rssavyqcna sneygyllan
      421 afvnvlaepp riltpadkly qviadspall dcayfgspkp eiewfkgvkg silrgseyif
      481 hyngtleipv aqkdssgtyt cvarnelgki qnevqlevkd ptmiikqpey kviqrygqvs
      541 feciikhdst llptviwlkd ndvlpdderf lvgkdnltim nvtdkddgty tcvvnttlds
      601 vsasavltvv aapptpaiiy arpnppfdle ltgqlersie lswipgdenn spitnfviey
      661 edglhepgvw hhqtevpgtq ttvhlklspy vnysfrviav neigrsqpse pseqyltksa
      721 spdenpsnvq gigsepdnlv itwesltdfq sngpglqykv swrqkdvdde wtsvivanvs
      781 kyivsgtptf vpyeikvqal ndlgyapeps evighsgedl pmvapgnvqv hvinstlakv
      841 hwdpvplksv rghlqgykvy ywkvqslsrr srrhveknil tfrgnktfgm lpglepyssy
      901 klnvrvvngk gegpaspdkv fktpegvpss psflkitnpt ldsltlewgs pihpngvlts
      961 yilkfqpinn thelgplvei ripanessli lknlnystry kfyfnaqtsv gsgsqiteea
     1021 vtimdeamas rqvdiatqgw figlmcaval lilillivcf irrnkggkyp vkekedahad
     1081 peiqpmkedd gtfgeysdae dhkplkkgsr tpsdrtvkke dsddslvdyg egvngqfned
     1141 gsfigqysgk kekepaegne sseapspvna mnsfv
//
LOCUS       XP_053919566            1162 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X32 [Cuculus canorus].
ACCESSION   XP_053919566
VERSION     XP_053919566.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063591.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1162
                     /product="neuronal cell adhesion molecule isoform X32"
                     /calculated_mol_wt=128604
     Region          35..129
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          35..39
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          44..48
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          53..60
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          66..71
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          74..76
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          83..86
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          108..116
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          119..129
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          138..227
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          152..156
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          166..170
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          189..193
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          204..209
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          220..223
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          246..328
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          258..262
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          271..275
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          293..297
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          307..312
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          320..323
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          332..420
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          348..352
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          361..365
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          385..389
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          399..404
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          412..415
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          424..512
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          442..446
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          455..459
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          478..482
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          492..497
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          505..508
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          518..603
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          533..537
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          548..552
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          <569..>797
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          570..573
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          583..588
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          596..599
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          607..697
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(607,673,688)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(689..690,692..693)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          808..900
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(896..897,899..900)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Site            order(912,980,995)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          913..997
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(996..997,999..1000)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1049..1138
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     CDS             1..1162
                     /gene="NRCAM"
                     /coded_by="XM_054063591.1:47..3535"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld llqpptitqq spkdyivdpr eniviqceak
       61 gkpppsfswt rngthfdidk dalvtmkpns gtlvinimng gkaeayegvy qctarnerga
      121 aisnnivirp srsplwtkek lepnhvregd slvlhcrppv glpppiifwm dnafqklpqs
      181 ervsqglngd lyfsnvqped sredyicyar fnhtqtiqqk qpisvkvfst ksvterqpvl
      241 ltptgststk velrgnvlll eciaaglptp virwikegge lpanrtffen fkktlkiidv
      301 seadsgnykc iarntlgsvh hvisvtvkaa pywitaprnl vlspgedgtl icrangnpkp
      361 niswlangvp iaiapedpsr kvdgdtiifs hvqerssavy qcnasneygy llanafvnvl
      421 aeppriltpa dklyqviads palldcayfg spkpeiewfk gvkgsilrgs eyifhyngtl
      481 eipvaqkdss gtytcvarne lgkiqnevql evkdptmiik qpeykviqry gqvsfeciik
      541 hdstllptvi wlkdndvlpd derflvgkdn ltimnvtdkd dgtytcvvnt tldsvsasav
      601 ltvvarpnpp fdleltgqle rsielswipg dennspitnf vieyedglhe pgvwhhqtev
      661 pgtqttvhlk lspyvnysfr viavneigrs qpsepseqyl tksaspdenp snvqgigsep
      721 dnlvitwesl tdfqsngpgl qykvswrqkd vddewtsviv anvskyivsg tptfvpyeik
      781 vqalndlgya pepsevighs gedlpmvapg nvqvhvinst lakvhwdpvp lksvrghlqg
      841 ykvyywkvqs lsrrsrrhve kniltfrgnk tfgmlpglep yssyklnvrv vngkgegpas
      901 pdkvfktpeg vpsspsflki tnptldsltl ewgspihpng vltsyilkfq pinnthelgp
      961 lveiripane sslilknlny strykfyfna qtsvgsgsqi teeavtimde gkmamasrqv
     1021 diatqgwfig lmcavallil illivcfirr nkggkypvke kedahadpei qpmkeddgtf
     1081 geysdaedhk plkkgsrtps drtvkkedsd dslvdygegv ngqfnedgsf igqysgkkek
     1141 epaegnesse apspvnamns fv
//
LOCUS       XP_053919573            1116 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X33 [Cuculus canorus].
ACCESSION   XP_053919573
VERSION     XP_053919573.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063598.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1116
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1116
                     /product="neuronal cell adhesion molecule isoform X33"
                     /calculated_mol_wt=123703
     Region          41..135
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          41..45
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          50..54
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          59..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          72..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          80..82
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          89..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          125..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          144..233
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          195..199
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          210..215
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          271..353
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          283..287
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          296..300
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          318..322
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          332..337
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          345..348
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          357..445
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          373..377
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          386..390
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          410..414
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          424..429
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          437..440
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          449..537
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          467..471
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          480..484
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          503..507
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          517..522
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          530..533
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          543..628
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          558..562
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          573..577
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          <594..>822
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          595..598
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          608..613
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          621..624
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          632..722
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(632,698,713)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(714..715,717..718)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          833..925
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(921..922,924..925)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Site            order(937,1005,1020)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          938..1022
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(1021..1022,1024..1025)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1071..>1106
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     CDS             1..1116
                     /gene="NRCAM"
                     /coded_by="XM_054063598.1:47..3397"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld sklleellqp ptitqqspkd yivdpreniv
       61 iqceakgkpp psfswtrngt hfdidkdalv tmkpnsgtlv inimnggkae ayegvyqcta
      121 rnergaaisn nivirpsrsp lwtkeklepn hvregdslvl hcrppvglpp piifwmdnaf
      181 qklpqservs qglngdlyfs nvqpedsred yicyarfnht qtiqqkqpis vkvfsmdsln
      241 dtiaanlsdt diygaksvte rqpvlltptg ststkvelrg nvllleciaa glptpvirwi
      301 keggelpanr tffenfkktl kiidvseads gnykciarnt lgsvhhvisv tvkaapywit
      361 aprnlvlspg edgtlicran gnpkpniswl angvpiaiap edpsrkvdgd tiifshvqer
      421 ssavyqcnas neygyllana fvnvlaeppr iltpadklyq viadspalld cayfgspkpe
      481 iewfkgvkgs ilrgseyifh yngtleipva qkdssgtytc varnelgkiq nevqlevkdp
      541 tmiikqpeyk viqrygqvsf eciikhdstl lptviwlkdn dvlpdderfl vgkdnltimn
      601 vtdkddgtyt cvvnttldsv sasavltvva rpnppfdlel tgqlersiel swipgdenns
      661 pitnfvieye dglhepgvwh hqtevpgtqt tvhlklspyv nysfrviavn eigrsqpsep
      721 seqyltksas pdenpsnvqg igsepdnlvi twesltdfqs ngpglqykvs wrqkdvddew
      781 tsvivanvsk yivsgtptfv pyeikvqaln dlgyapepse vighsgedlp mvapgnvqvh
      841 vinstlakvh wdpvplksvr ghlqgykvyy wkvqslsrrs rrhveknilt frgnktfgml
      901 pglepyssyk lnvrvvngkg egpaspdkvf ktpegvpssp sflkitnptl dsltlewgsp
      961 ihpngvltsy ilkfqpinnt helgplveir ipanesslil knlnystryk fyfnaqtsvg
     1021 sgsqiteeav timdeamasr qvdiatqgwf iglmcavall ilillivcfi rrnkggkypv
     1081 kekedahadp eiqpmkeddg tfgeyrlfsf vssapf
//
LOCUS       XP_053919581            1110 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X34 [Cuculus canorus].
ACCESSION   XP_053919581
VERSION     XP_053919581.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063606.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1110
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1110
                     /product="neuronal cell adhesion molecule isoform X34"
                     /calculated_mol_wt=123003
     Region          35..129
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          35..39
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          44..48
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          53..60
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          66..71
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          74..76
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          83..86
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          108..116
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          119..129
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          138..227
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          152..156
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          166..170
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          189..193
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          204..209
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          220..223
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          265..347
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          277..281
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          290..294
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          312..316
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          326..331
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          339..342
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          351..439
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          367..371
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          380..384
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          404..408
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          418..423
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          431..434
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          443..531
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          461..465
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          474..478
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          497..501
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          511..516
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          524..527
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          537..622
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          552..556
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          567..571
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          <588..>816
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          589..592
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          602..607
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          615..618
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          626..716
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(626,692,707)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(708..709,711..712)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          827..919
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(915..916,918..919)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Site            order(931,999,1014)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          932..1016
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(1015..1016,1018..1019)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1065..>1100
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     CDS             1..1110
                     /gene="NRCAM"
                     /coded_by="XM_054063606.1:47..3379"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld llqpptitqq spkdyivdpr eniviqceak
       61 gkpppsfswt rngthfdidk dalvtmkpns gtlvinimng gkaeayegvy qctarnerga
      121 aisnnivirp srsplwtkek lepnhvregd slvlhcrppv glpppiifwm dnafqklpqs
      181 ervsqglngd lyfsnvqped sredyicyar fnhtqtiqqk qpisvkvfsm dslndtiaan
      241 lsdtdiygak svterqpvll tptgststkv elrgnvllle ciaaglptpv irwikeggel
      301 panrtffenf kktlkiidvs eadsgnykci arntlgsvhh visvtvkaap ywitaprnlv
      361 lspgedgtli crangnpkpn iswlangvpi aiapedpsrk vdgdtiifsh vqerssavyq
      421 cnasneygyl lanafvnvla eppriltpad klyqviadsp alldcayfgs pkpeiewfkg
      481 vkgsilrgse yifhyngtle ipvaqkdssg tytcvarnel gkiqnevqle vkdptmiikq
      541 peykviqryg qvsfeciikh dstllptviw lkdndvlpdd erflvgkdnl timnvtdkdd
      601 gtytcvvntt ldsvsasavl tvvarpnppf dleltgqler sielswipgd ennspitnfv
      661 ieyedglhep gvwhhqtevp gtqttvhlkl spyvnysfrv iavneigrsq psepseqylt
      721 ksaspdenps nvqgigsepd nlvitweslt dfqsngpglq ykvswrqkdv ddewtsviva
      781 nvskyivsgt ptfvpyeikv qalndlgyap epsevighsg edlpmvapgn vqvhvinstl
      841 akvhwdpvpl ksvrghlqgy kvyywkvqsl srrsrrhvek niltfrgnkt fgmlpglepy
      901 ssyklnvrvv ngkgegpasp dkvfktpegv psspsflkit nptldsltle wgspihpngv
      961 ltsyilkfqp innthelgpl veiripanes slilknlnys trykfyfnaq tsvgsgsqit
     1021 eeavtimdea masrqvdiat qgwfiglmca vallililli vcfirrnkgg kypvkekeda
     1081 hadpeiqpmk eddgtfgeyr lfsfvssapf
//
LOCUS       XP_053919586            1302 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X35 [Cuculus canorus].
ACCESSION   XP_053919586
VERSION     XP_053919586.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063611.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1302
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1302
                     /product="neuronal cell adhesion molecule isoform X35"
                     /calculated_mol_wt=143897
     Region          41..135
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          41..45
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          50..54
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          59..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          72..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          80..82
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          89..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          125..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          144..233
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          195..199
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          210..215
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          252..334
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          264..268
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          277..281
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          299..303
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          313..318
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          326..329
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          338..426
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          354..358
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          367..371
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          391..395
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          405..410
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          418..421
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          430..518
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          448..452
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          461..465
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          484..488
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          498..503
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          511..514
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          524..609
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          539..543
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409359"
     Region          554..559
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409359"
     Region          576..579
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409359"
     Region          589..594
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409359"
     Region          602..605
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409359"
     Region          623..713
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(623,689,704)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          678..1135
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(705..706,708..709)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          824..916
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(912..913,915..916)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Site            order(928,996,1011)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          929..1013
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(1012..1013,1015..1016)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1189..1278
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     CDS             1..1302
                     /gene="NRCAM"
                     /coded_by="XM_054063611.1:324..4232"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld sklleellqp ptitqqspkd yivdpreniv
       61 iqceakgkpp psfswtrngt hfdidkdalv tmkpnsgtlv inimnggkae ayegvyqcta
      121 rnergaaisn nivirpsrsp lwtkeklepn hvregdslvl hcrppvglpp piifwmdnaf
      181 qklpqservs qglngdlyfs nvqpedsred yicyarfnht qtiqqkqpis vkvfstksvt
      241 erqpvlltpt gststkvelr gnvlllecia aglptpvirw ikeggelpan rtffenfkkt
      301 lkiidvsead sgnykciarn tlgsvhhvis vtvkaapywi taprnlvlsp gedgtlicra
      361 ngnpkpnisw langvpiaia pedpsrkvdg dtiifshvqe rssavyqcna sneygyllan
      421 afvnvlaepp riltpadkly qviadspall dcayfgspkp eiewfkgvkg silrgseyif
      481 hyngtleipv aqkdssgtyt cvarnelgki qnevqlevkd ptmiikqpey kviqrygqvs
      541 feciikhdst llptviwlkd ndvlpdderf lvgkdnltim nvtdkddgty tcvvnttlds
      601 vsasavltvv aapptpaiiy arpnppfdle ltgqlersie lswipgdenn spitnfviey
      661 edglhepgvw hhqtevpgtq ttvhlklspy vnysfrviav neigrsqpse pseqyltksa
      721 spdenpsnvq gigsepdnlv itwesltdfq sngpglqykv swrqkdvdde wtsvivanvs
      781 kyivsgtptf vpyeikvqal ndlgyapeps evighsgedl pmvapgnvqv hvinstlakv
      841 hwdpvplksv rghlqgykvy ywkvqslsrr srrhveknil tfrgnktfgm lpglepyssy
      901 klnvrvvngk gegpaspdkv fktpegvpss psflkitnpt ldsltlewgs pihpngvlts
      961 yilkfqpinn thelgplvei ripanessli lknlnystry kfyfnaqtsv gsgsqiteea
     1021 vtimdeagil rpavgagkgy setlfatspv mhtvrptfyk vqplyprirn ittaaaetya
     1081 nisweyegpd htnfyveygv agskedwkke ivngsrsffv lkgltpgtay kvrvgaegls
     1141 gfrssedvfe tgpamasrqv diatqgwfig lmcavallil illivcfirr nkggkypvke
     1201 kedahadpei qpmkeddgtf geysdaedhk plkkgsrtps drtvkkedsd dslvdygegv
     1261 ngqfnedgsf igqysgkkek epaegnesse apspvnamns fv
//
LOCUS       XP_053919592            1271 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X36 [Cuculus canorus].
ACCESSION   XP_053919592
VERSION     XP_053919592.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063617.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1271
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1271
                     /product="neuronal cell adhesion molecule isoform X36"
                     /calculated_mol_wt=140577
     Region          35..129
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          35..39
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          44..48
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          53..60
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          66..71
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          74..76
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          83..86
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          108..116
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          119..129
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          138..227
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          152..156
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          166..170
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          189..193
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          204..209
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          220..223
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          265..347
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          277..281
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          290..294
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          312..316
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          326..331
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          339..342
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          351..439
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          367..371
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          380..384
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          404..408
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          418..423
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          431..434
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          443..531
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          461..465
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          474..478
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          497..501
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          511..516
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          524..527
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          537..622
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          552..556
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          567..571
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          589..592
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          602..607
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          615..618
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          626..716
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(626,692,707)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          <646..1105
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(708..709,711..712)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1158..1247
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     CDS             1..1271
                     /gene="NRCAM"
                     /coded_by="XM_054063617.1:47..3862"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld llqpptitqq spkdyivdpr eniviqceak
       61 gkpppsfswt rngthfdidk dalvtmkpns gtlvinimng gkaeayegvy qctarnerga
      121 aisnnivirp srsplwtkek lepnhvregd slvlhcrppv glpppiifwm dnafqklpqs
      181 ervsqglngd lyfsnvqped sredyicyar fnhtqtiqqk qpisvkvfsm dslndtiaan
      241 lsdtdiygak svterqpvll tptgststkv elrgnvllle ciaaglptpv irwikeggel
      301 panrtffenf kktlkiidvs eadsgnykci arntlgsvhh visvtvkaap ywitaprnlv
      361 lspgedgtli crangnpkpn iswlangvpi aiapedpsrk vdgdtiifsh vqerssavyq
      421 cnasneygyl lanafvnvla eppriltpad klyqviadsp alldcayfgs pkpeiewfkg
      481 vkgsilrgse yifhyngtle ipvaqkdssg tytcvarnel gkiqnevqle vkdptmiikq
      541 peykviqryg qvsfeciikh dstllptviw lkdndvlpdd erflvgkdnl timnvtdkdd
      601 gtytcvvntt ldsvsasavl tvvarpnppf dleltgqler sielswipgd ennspitnfv
      661 ieyedglhep gvwhhqtevp gtqttvhlkl spyvnysfrv iavneigrsq psepseqylt
      721 ksaspdenps nvqgigsepd nlvitweslt dfqsngpglq ykvswrqkdv ddewtsviva
      781 nvskyivsgt ptfvpyeikv qalndlgyap epsevighsg edlpmvapgn vqvhvinstl
      841 akvhwdpvpl ksvrghlqgy kvyywkvqsl srrsrrhvek niltfrgnkt fgmlpglepy
      901 ssyklnvrvv ngkgegpasp dkvfktpegv psspsflkit nptldsltle wgspihpngv
      961 ltsyilkfqp innthelgpl veiripanes slilknlnys trykfyfnaq tsvgsgsqit
     1021 eeavtimdev qplyprirni ttaaaetyan isweyegpdh tnfyveygva gskedwkkei
     1081 vngsrsffvl kgltpgtayk vrvgaeglsg frssedvfet gpamasrqvd iatqgwfigl
     1141 mcavallili llivcfirrn kggkypvkek edahadpeiq pmkeddgtfg eysdaedhkp
     1201 lkkgsrtpsd rtvkkedsdd slvdygegvn gqfnedgsfi gqysgkkeke paegnessea
     1261 pspvnamnsf v
//
LOCUS       XP_053919601            1192 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal cell adhesion molecule isoform X37 [Cuculus canorus].
ACCESSION   XP_053919601
VERSION     XP_053919601.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063626.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1192
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1192
                     /product="neuronal cell adhesion molecule isoform X37"
                     /calculated_mol_wt=131750
     Region          35..129
                     /region_name="IgI_NrCAM"
                     /note="Immunoglobulin (Ig)-like domain of NrCAM (Ng
                     (neuronglia) CAM-related cell adhesion molecule); member
                     of the I-set of Ig superfamily (IgSF) domains; cd05874"
                     /db_xref="CDD:409458"
     Region          35..39
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409458"
     Region          44..48
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409458"
     Region          53..60
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409458"
     Region          66..71
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409458"
     Region          74..76
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409458"
     Region          83..86
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409458"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409458"
     Region          108..116
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409458"
     Region          119..129
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409458"
     Region          138..227
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          152..156
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409432"
     Region          166..170
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409432"
     Region          189..193
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409432"
     Region          204..209
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409432"
     Region          220..223
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409432"
     Region          265..347
                     /region_name="Ig3_L1-CAM_like"
                     /note="Third immunoglobulin (Ig)-like domain of the L1
                     cell adhesion molecule (CAM), and similar domains;
                     cd05731"
                     /db_xref="CDD:409394"
     Region          277..281
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          290..294
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          312..316
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          326..331
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          339..342
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409394"
     Region          351..439
                     /region_name="Ig4_NrCAM"
                     /note="Fourth immunoglobulin (Ig)-like domain of NrCAM
                     (NgCAM-related cell adhesion molecule); cd05868"
                     /db_xref="CDD:409454"
     Region          367..371
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409454"
     Region          380..384
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409454"
     Region          404..408
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409454"
     Region          418..423
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409454"
     Region          431..434
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409454"
     Region          443..531
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          461..465
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          474..478
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          497..501
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          511..516
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          524..527
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          537..622
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          552..556
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409359"
     Region          567..572
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409359"
     Region          589..592
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409359"
     Region          596..1054
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          602..607
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409359"
     Region          615..618
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409359"
     Region          636..726
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(636,702,717)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(718..719,721..722)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Site            order(941,1009,1024)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          942..1026
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(1025..1026,1028..1029)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1075..1168
                     /region_name="Bravo_FIGEY"
                     /note="Bravo-like intracellular region; pfam13882"
                     /db_xref="CDD:464016"
     CDS             1..1192
                     /gene="NRCAM"
                     /coded_by="XM_054063626.1:47..3625"
                     /db_xref="GeneID:104062397"
ORIGIN      
        1 mlkkknisas kaslvlflcq iisaldvpld llqpptitqq spkdyivdpr eniviqceak
       61 gkpppsfswt rngthfdidk dalvtmkpns gtlvinimng gkaeayegvy qctarnerga
      121 aisnnivirp srsplwtkek lepnhvregd slvlhcrppv glpppiifwm dnafqklpqs
      181 ervsqglngd lyfsnvqped sredyicyar fnhtqtiqqk qpisvkvfsm dslndtiaan
      241 lsdtdiygak svterqpvll tptgststkv elrgnvllle ciaaglptpv irwikeggel
      301 panrtffenf kktlkiidvs eadsgnykci arntlgsvhh visvtvkaap ywitaprnlv
      361 lspgedgtli crangnpkpn iswlangvpi aiapedpsrk vdgdtiifsh vqerssavyq
      421 cnasneygyl lanafvnvla eppriltpad klyqviadsp alldcayfgs pkpeiewfkg
      481 vkgsilrgse yifhyngtle ipvaqkdssg tytcvarnel gkiqnevqle vkdptmiikq
      541 peykviqryg qvsfeciikh dstllptviw lkdndvlpdd erflvgkdnl timnvtdkdd
      601 gtytcvvntt ldsvsasavl tvvaapptpa iiyarpnppf dleltgqler sielswipgd
      661 ennspitnfv ieyedglhep gvwhhqtevp gtqttvhlkl spyvnysfrv iavneigrsq
      721 psepseqylt ksaspdenps nvqgigsepd nlvitweslt dfqsngpglq ykvswrqkdv
      781 ddewtsviva nvskyivsgt ptfvpyeikv qalndlgyap epsevighsg edlpmvapgn
      841 vqvhvinstl akvhwdpvpl ksvrghlqgy kvyywkvqsl srrsrrhvek niltfrgnkt
      901 fgmlpglepy ssyklnvrvv ngkgegpasp dkvfktpegv psspsflkit nptldsltle
      961 wgspihpngv ltsyilkfqp innthelgpl veiripanes slilknlnys trykfyfnaq
     1021 tsvgsgsqit eeavtimdea masrqvdiat qgwfiglmca vallililli vcfirrnkgg
     1081 kypvkekeda hadpeiqpmk eddgtfgeyr slesdaedhk plkkgsrtps drtvkkedsd
     1141 dslvdygegv ngqfnedgsf igqysgkkek epaegnesse apspvnamns fv
//
LOCUS       XP_009561684             459 aa            linear   VRT 09-MAR-2023
DEFINITION  tubulin alpha-3 chain [Cuculus canorus].
ACCESSION   XP_009561684
VERSION     XP_009561684.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563389.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..459
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..459
                     /product="tubulin alpha-3 chain"
                     /calculated_mol_wt=51205
     Region          1..446
                     /region_name="PTZ00335"
                     /note="tubulin alpha chain; Provisional"
                     /db_xref="CDD:185562"
     CDS             1..459
                     /gene="LOC104061444"
                     /coded_by="XM_009563389.2:57..1436"
                     /db_xref="GeneID:104061444"
ORIGIN      
        1 mrecisihig qagvqmgnac welyclehgi qadgtipspk qvkpmepkse qvdssfetff
       61 cetasgkhvp ravfidlept videirtgty halfhpeqli sgkedaanny arghytigke
      121 iidtvlsrir kmadqcsglq gflvfhsfgg gtgsgftsll merlsveysk ksklefsvyp
      181 apqvstavve pynsilttht tlehsdcsfm vdneaiydic nrnldierpt ytnlnrligq
      241 ivssvtaslr fngalnvdli efqtnlvpyp rihfplttya piisaekayh eqlsvpeitn
      301 acfefsnqmv kcdprrgkym accllyrgdv vpkdvnaaia siktrrsiqf vdwcptgfkv
      361 ginyqpptvv pggdlakvqr avcmlsntta iaeawarldh kfdlmyakra fvhwyvgegm
      421 eegefseare dlaalekdye evgrdsadge edeadedey
//
LOCUS       XP_009561688             449 aa            linear   VRT 09-MAR-2023
DEFINITION  tubulin alpha-3 chain isoform X1 [Cuculus canorus].
ACCESSION   XP_009561688
VERSION     XP_009561688.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563393.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561688.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..449
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..449
                     /product="tubulin alpha-3 chain isoform X1"
                     /calculated_mol_wt=49976
     Region          3..449
                     /region_name="PTZ00335"
                     /note="tubulin alpha chain; Provisional"
                     /db_xref="CDD:185562"
     CDS             1..449
                     /gene="LOC104061446"
                     /coded_by="XM_009563393.2:1..1350"
                     /db_xref="GeneID:104061446"
ORIGIN      
        1 mqrecisvhi gqagvqmgns cwelyclehg ikpdgmispc asseqtnssf gtffsetgag
       61 kyvpraifvd leptvideir ngtyrtlfhp eqlingkeda annyarghys igkeiidpvf
      121 erarkmteqc sglqgflvfh sfgggtgsgf tsllmerlsv eygkksklef svypaprvst
      181 avvepynsil tthttlehsd csfmvdneai ydicnrnldi erptyknlnr ligqivssit
      241 aslrfdgaln vdltefqtnl vpyprihfpl ttyapiisae kahheqlsvp eitnacfefs
      301 nqmvkcdprr gkymacclly rgdvvpkdvn aaiasiktrr siqfvdwcpt gfkvginyqp
      361 ptvvpggdla kvqravcmls nttaiaeawa rldhkfdlmy akrafvhwyv gegmeegefs
      421 earedlaale kdyeevgmds vggddcdee
//
LOCUS       XP_009561686             453 aa            linear   VRT 09-MAR-2023
DEFINITION  tubulin alpha-3 chain isoform X2 [Cuculus canorus].
ACCESSION   XP_009561686
VERSION     XP_009561686.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563391.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561686.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..453
                     /product="tubulin alpha-3 chain isoform X2"
                     /calculated_mol_wt=50359
     Region          7..453
                     /region_name="PTZ00335"
                     /note="tubulin alpha chain; Provisional"
                     /db_xref="CDD:185562"
     CDS             1..453
                     /gene="LOC104061446"
                     /coded_by="XM_009563391.2:1..1362"
                     /db_xref="GeneID:104061446"
ORIGIN      
        1 mvnnlareci svhigqagvq mgnscwelyc lehgikpdgm ispcasseqt nssfgtffse
       61 tgagkyvpra ifvdleptvi deirngtyrt lfhpeqling kedaannyar ghysigkeii
      121 dpvferarkm teqcsglqgf lvfhsfgggt gsgftsllme rlsveygkks klefsvypap
      181 rvstavvepy nsiltthttl ehsdcsfmvd neaiydicnr nldierptyk nlnrligqiv
      241 ssitaslrfd galnvdltef qtnlvpypri hfplttyapi isaekahheq lsvpeitnac
      301 fefsnqmvkc dprrgkymac cllyrgdvvp kdvnaaiasi ktrrsiqfvd wcptgfkvgi
      361 nyqpptvvpg gdlakvqrav cmlsnttaia eawarldhkf dlmyakrafv hwyvgegmee
      421 gefsearedl aalekdyeev gmdsvggddc dee
//
LOCUS       XP_053919635             156 aa            linear   VRT 09-MAR-2023
DEFINITION  urocortin-3 [Cuculus canorus].
ACCESSION   XP_053919635
VERSION     XP_053919635.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063660.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..156
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..156
                     /product="urocortin-3"
                     /calculated_mol_wt=17229
     Region          116..152
                     /region_name="CRF"
                     /note="Corticotropin-releasing factor family; pfam00473"
                     /db_xref="CDD:425703"
     CDS             1..156
                     /gene="UCN3"
                     /coded_by="XM_054063660.1:2215..2685"
                     /db_xref="GeneID:104061445"
ORIGIN      
        1 mphtrlllll illcaaetsq alrlynsasi fsclnaalae aqksqpegna ilerrsfdsp
       61 lpemvseeee gedvvdeemg krtfpgeghy kyvsqaqvkg ktyqnraksd rrtkvtlsld
      121 vptnimnilf niakaknlra kaaanahlma qigrrk
//
LOCUS       XP_053919644             156 aa            linear   VRT 09-MAR-2023
DEFINITION  urocortin-3 [Cuculus canorus].
ACCESSION   XP_053919644
VERSION     XP_053919644.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063669.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..156
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..156
                     /product="urocortin-3"
                     /calculated_mol_wt=17229
     Region          116..152
                     /region_name="CRF"
                     /note="Corticotropin-releasing factor family; pfam00473"
                     /db_xref="CDD:425703"
     CDS             1..156
                     /gene="UCN3"
                     /coded_by="XM_054063669.1:2119..2589"
                     /db_xref="GeneID:104061445"
ORIGIN      
        1 mphtrlllll illcaaetsq alrlynsasi fsclnaalae aqksqpegna ilerrsfdsp
       61 lpemvseeee gedvvdeemg krtfpgeghy kyvsqaqvkg ktyqnraksd rrtkvtlsld
      121 vptnimnilf niakaknlra kaaanahlma qigrrk
//
LOCUS       XP_053919651             156 aa            linear   VRT 09-MAR-2023
DEFINITION  urocortin-3 [Cuculus canorus].
ACCESSION   XP_053919651
VERSION     XP_053919651.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063676.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..156
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..156
                     /product="urocortin-3"
                     /calculated_mol_wt=17229
     Region          116..152
                     /region_name="CRF"
                     /note="Corticotropin-releasing factor family; pfam00473"
                     /db_xref="CDD:425703"
     CDS             1..156
                     /gene="UCN3"
                     /coded_by="XM_054063676.1:2163..2633"
                     /db_xref="GeneID:104061445"
ORIGIN      
        1 mphtrlllll illcaaetsq alrlynsasi fsclnaalae aqksqpegna ilerrsfdsp
       61 lpemvseeee gedvvdeemg krtfpgeghy kyvsqaqvkg ktyqnraksd rrtkvtlsld
      121 vptnimnilf niakaknlra kaaanahlma qigrrk
//
LOCUS       XP_053919661            1871 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM domain only protein 7 isoform X1 [Cuculus canorus].
ACCESSION   XP_053919661
VERSION     XP_053919661.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063686.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1871
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1871
                     /product="LIM domain only protein 7 isoform X1"
                     /calculated_mol_wt=213738
     Region          14..129
                     /region_name="CH_LMO7"
                     /note="calponin homology (CH) domain found in LIM domain
                     only protein 7; cd21277"
                     /db_xref="CDD:409126"
     Site            order(14,18,68,70..71,74..75,77,87..95,113,115..116,
                     118..119,122..123,126)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409126"
     Region          243..>310
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          755..902
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          1175..1247
                     /region_name="PDZ"
                     /note="Domain present in PSD-95, Dlg, and ZO-1/2;
                     smart00228"
                     /db_xref="CDD:214570"
     Site            order(1176..1180,1193,1196,1225,1230,1233..1234)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467241"
     Region          <1380..>1673
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     Region          1802..1860
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cd08368"
                     /db_xref="CDD:259829"
     Site            order(1802,1805,1825,1828,1831,1834,1856,1859)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     CDS             1..1871
                     /gene="LMO7"
                     /coded_by="XM_054063686.1:117..5732"
                     /db_xref="GeneID:104054962"
ORIGIN      
        1 megredaecd cqaafdeaqr wvetvtgksf gtkdfraale ngvllcdlin kikpgvikki
       61 nrlstpiagl dninvflkac eniglkeaql fhpgdlqdls nrvtvkpeet nrrvknvlit
      121 lywlgrkaqs nphyngpyln lksfekllgq altkaleess hlnrsgrdsg ygdiwyvdrg
      181 epfssstshk rddsfdslds lgsrsstsfs sditlkggse gcdsdtdsel pfkmhdshkd
      241 drsyrrisvi epkpttdfnr flpsknkqta yvpaplrkkr teknednrrs waspvftesd
      301 gtfssgrern pvascqnsra eseftnpasi qmiyeydsgs dsederklpd vvmddlakrr
      361 flvkkspvss aapghhfvlh sdspkscsqe nypaaplaam leplsnqrrq rqldtkeenk
      421 prlnipseis gyfdedeeee igipniekdd lyfrklssta antvpfdkfl pkfwtpeeel
      481 lwkkirkssf kpwykeiqgf srkksdseee efaykqssai vanqprpsfd wnscrrdqsy
      541 kptaeyvgss lsqiaegkil easdqpsqfs llqalqkysd ylssetktki dptsgprlik
      601 crknisfvpg ykqgdgengy lypdlenddl firktgafhv npvvlqdpry fkkiseqepf
      661 legeiilqpr egqqvipdle kddmifrkil sqkkevplsg apdtyhpalf pdpwslpeei
      721 rskflcllek nttpeerksn grvlspssrh kkddmltrki eswkvgsniq pvnfipgpcs
      781 eedwkkweai reaskvrhkk rqmverlfqk lsdeqgsksl ndvsaeelqs yrkiryeelq
      841 kikeqlqeqd lkwqedlakw knrrksftse lqkkkeeree ierrtsevsg rrtkslkemq
      901 eeredrdqds ygrqkhenrw tyslnddvfr eekapspqsa akdylleedt sysskdsksa
      961 yatqlhkenl pessatheap alpkslaeeq sstllstrys mnaqtgsaqv saslprsyqk
     1021 tdtsrltsvv tprpfgvhsr gisslprsft mddaqkynge vektkrtqtl ftsssfsqpd
     1081 sahplssgaf rsrgeeeeee kegvqstspp slalpvksqd qdagssilkp eycsppdsls
     1141 lassaehmsl pqpedskyle qysemrisin qrpghsrsfg fttnwsssga fvqtveegsp
     1201 aalsqlhvdd eiiainstkv scmdysqwee aisralktgn lvmdirrygk ndwgkdqpsl
     1261 phirhkilnl tsmatniigt penkwidats geqvsnvstv stkrdfsssl pssdtekkli
     1321 ngmqgdlnsn eqrasepisl knlkrrsqff eqggpepamp dlpvpsisap srrvwdqeee
     1381 rkrqekwqke qdrllqekyk reqeklreew lrakqeaeke sskyfdeeqt vltlnatsvp
     1441 arvpsvsswr aspeadipee pegdggsevs phllgkeeer rlqeerriqe eaalrfehdr
     1501 elqelelerq rkereqqyme eqrrqaemee qrrqaemeeq rrqaemeeqr rqaerqrqes
     1561 veipqyqrhy eryevsktie dradhplidr hyeryevskt ieeqpdqsfa drnkskstse
     1621 lnefntirng tqskysersw natdtqkksq kehnlsaael erqqilqemr krtslhtdss
     1681 wirqrsssih kepislysns mrrgesldnl dssrtsswrh hswmnqsass sslsssqdfs
     1741 rpvstsnray mctpssskas taatssrapt vsqaapraqs plstsqtgsq trsrsvsgkk
     1801 icsycnnvlg kgaamiiesl glcyhlhcfk cvacgcdlgg srsgaevrir nnklfcndcy
     1861 irfktgqpts m
//
LOCUS       XP_053919666            1870 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM domain only protein 7 isoform X2 [Cuculus canorus].
ACCESSION   XP_053919666
VERSION     XP_053919666.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063691.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1870
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1870
                     /product="LIM domain only protein 7 isoform X2"
                     /calculated_mol_wt=213651
     Region          14..129
                     /region_name="CH_LMO7"
                     /note="calponin homology (CH) domain found in LIM domain
                     only protein 7; cd21277"
                     /db_xref="CDD:409126"
     Site            order(14,18,68,70..71,74..75,77,87..95,113,115..116,
                     118..119,122..123,126)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409126"
     Region          243..>310
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          754..901
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          1174..1246
                     /region_name="PDZ"
                     /note="Domain present in PSD-95, Dlg, and ZO-1/2;
                     smart00228"
                     /db_xref="CDD:214570"
     Site            order(1175..1179,1192,1195,1224,1229,1232..1233)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467241"
     Region          <1379..>1672
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     Region          1801..1859
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cd08368"
                     /db_xref="CDD:259829"
     Site            order(1801,1804,1824,1827,1830,1833,1855,1858)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     CDS             1..1870
                     /gene="LMO7"
                     /coded_by="XM_054063691.1:117..5729"
                     /db_xref="GeneID:104054962"
ORIGIN      
        1 megredaecd cqaafdeaqr wvetvtgksf gtkdfraale ngvllcdlin kikpgvikki
       61 nrlstpiagl dninvflkac eniglkeaql fhpgdlqdls nrvtvkpeet nrrvknvlit
      121 lywlgrkaqs nphyngpyln lksfekllgq altkaleess hlnrsgrdsg ygdiwyvdrg
      181 epfssstshk rddsfdslds lgsrsstsfs sditlkggse gcdsdtdsel pfkmhdshkd
      241 drsyrrisvi epkpttdfnr flpsknkqta yvpaplrkkr teknednrrs waspvftesd
      301 gtfssgrern pvascqnsra eseftnpasi qmiyeydsgs dsederklpd vvmddlakrr
      361 flvkkspvss aapghhfvlh sdspkscsqe nypaaplaam leplsnqrrq rqldtkeenk
      421 prlnipseis gyfdedeeee igipniekdd lyfrklssta antvpfdkfl pkfwtpeeel
      481 lwkkirkssf kpwykeiqgf rkksdseeee faykqssaiv anqprpsfdw nscrrdqsyk
      541 ptaeyvgssl sqiaegkile asdqpsqfsl lqalqkysdy lssetktkid ptsgprlikc
      601 rknisfvpgy kqgdgengyl ypdlenddlf irktgafhvn pvvlqdpryf kkiseqepfl
      661 egeiilqpre gqqvipdlek ddmifrkils qkkevplsga pdtyhpalfp dpwslpeeir
      721 skflcllekn ttpeerksng rvlspssrhk kddmltrkie swkvgsniqp vnfipgpcse
      781 edwkkweair easkvrhkkr qmverlfqkl sdeqgsksln dvsaeelqsy rkiryeelqk
      841 ikeqlqeqdl kwqedlakwk nrrksftsel qkkkeereei errtsevsgr rtkslkemqe
      901 eredrdqdsy grqkhenrwt yslnddvfre ekapspqsaa kdylleedts ysskdsksay
      961 atqlhkenlp essatheapa lpkslaeeqs stllstrysm naqtgsaqvs aslprsyqkt
     1021 dtsrltsvvt prpfgvhsrg isslprsftm ddaqkyngev ektkrtqtlf tsssfsqpds
     1081 ahplssgafr srgeeeeeek egvqstspps lalpvksqdq dagssilkpe ycsppdslsl
     1141 assaehmslp qpedskyleq ysemrisinq rpghsrsfgf ttnwsssgaf vqtveegspa
     1201 alsqlhvdde iiainstkvs cmdysqweea isralktgnl vmdirrygkn dwgkdqpslp
     1261 hirhkilnlt smatniigtp enkwidatsg eqvsnvstvs tkrdfssslp ssdtekklin
     1321 gmqgdlnsne qrasepislk nlkrrsqffe qggpepampd lpvpsisaps rrvwdqeeer
     1381 krqekwqkeq drllqekykr eqeklreewl rakqeaekes skyfdeeqtv ltlnatsvpa
     1441 rvpsvsswra speadipeep egdggsevsp hllgkeeerr lqeerriqee aalrfehdre
     1501 lqelelerqr kereqqymee qrrqaemeeq rrqaemeeqr rqaemeeqrr qaerqrqesv
     1561 eipqyqrhye ryevsktied radhplidrh yeryevskti eeqpdqsfad rnkskstsel
     1621 nefntirngt qskyserswn atdtqkksqk ehnlsaaele rqqilqemrk rtslhtdssw
     1681 irqrsssihk epislysnsm rrgesldnld ssrtsswrhh swmnqsasss slsssqdfsr
     1741 pvstsnraym ctpssskast aatssraptv sqaapraqsp lstsqtgsqt rsrsvsgkki
     1801 csycnnvlgk gaamiieslg lcyhlhcfkc vacgcdlggs rsgaevrirn nklfcndcyi
     1861 rfktgqptsm
//
LOCUS       XP_053919672            1866 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM domain only protein 7 isoform X3 [Cuculus canorus].
ACCESSION   XP_053919672
VERSION     XP_053919672.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063697.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1866
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1866
                     /product="LIM domain only protein 7 isoform X3"
                     /calculated_mol_wt=213045
     Region          14..129
                     /region_name="CH_LMO7"
                     /note="calponin homology (CH) domain found in LIM domain
                     only protein 7; cd21277"
                     /db_xref="CDD:409126"
     Site            order(14,18,68,70..71,74..75,77,87..95,113,115..116,
                     118..119,122..123,126)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409126"
     Region          243..>310
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          755..902
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          1175..1247
                     /region_name="PDZ"
                     /note="Domain present in PSD-95, Dlg, and ZO-1/2;
                     smart00228"
                     /db_xref="CDD:214570"
     Site            order(1176..1180,1193,1196,1225,1230,1233..1234)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467241"
     Region          <1375..>1668
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     Region          1797..1855
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cd08368"
                     /db_xref="CDD:259829"
     Site            order(1797,1800,1820,1823,1826,1829,1851,1854)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     CDS             1..1866
                     /gene="LMO7"
                     /coded_by="XM_054063697.1:117..5717"
                     /db_xref="GeneID:104054962"
ORIGIN      
        1 megredaecd cqaafdeaqr wvetvtgksf gtkdfraale ngvllcdlin kikpgvikki
       61 nrlstpiagl dninvflkac eniglkeaql fhpgdlqdls nrvtvkpeet nrrvknvlit
      121 lywlgrkaqs nphyngpyln lksfekllgq altkaleess hlnrsgrdsg ygdiwyvdrg
      181 epfssstshk rddsfdslds lgsrsstsfs sditlkggse gcdsdtdsel pfkmhdshkd
      241 drsyrrisvi epkpttdfnr flpsknkqta yvpaplrkkr teknednrrs waspvftesd
      301 gtfssgrern pvascqnsra eseftnpasi qmiyeydsgs dsederklpd vvmddlakrr
      361 flvkkspvss aapghhfvlh sdspkscsqe nypaaplaam leplsnqrrq rqldtkeenk
      421 prlnipseis gyfdedeeee igipniekdd lyfrklssta antvpfdkfl pkfwtpeeel
      481 lwkkirkssf kpwykeiqgf srkksdseee efaykqssai vanqprpsfd wnscrrdqsy
      541 kptaeyvgss lsqiaegkil easdqpsqfs llqalqkysd ylssetktki dptsgprlik
      601 crknisfvpg ykqgdgengy lypdlenddl firktgafhv npvvlqdpry fkkiseqepf
      661 legeiilqpr egqqvipdle kddmifrkil sqkkevplsg apdtyhpalf pdpwslpeei
      721 rskflcllek nttpeerksn grvlspssrh kkddmltrki eswkvgsniq pvnfipgpcs
      781 eedwkkweai reaskvrhkk rqmverlfqk lsdeqgsksl ndvsaeelqs yrkiryeelq
      841 kikeqlqeqd lkwqedlakw knrrksftse lqkkkeeree ierrtsevsg rrtkslkemq
      901 eeredrdqds ygrqkhenrw tyslnddvfr eekapspqsa akdylleedt sysskdsksa
      961 yatqlhkenl pessatheap alpkslaeeq sstllstrys mnaqtgsaqv saslprsyqk
     1021 tdtsrltsvv tprpfgvhsr gisslprsft mddaqkynge vektkrtqtl ftsssfsqpd
     1081 sahplssgaf rsrgeeeeee kegvqstspp slalpvksqd qdagssilkp eycsppdsls
     1141 lassaehmsl pqpedskyle qysemrisin qrpghsrsfg fttnwsssga fvqtveegsp
     1201 aalsqlhvdd eiiainstkv scmdysqwee aisralktgn lvmdirrygk ndwgkdqpsl
     1261 phirhkilnl tsmatniigt penkwidats geqvsnvstv stkrdfsssl pssdtekkli
     1321 ngmqgdlnsn eqrgssgysy nswvylcggp epampdlpvp sisapsrrvw dqeeerkrqe
     1381 kwqkeqdrll qekykreqek lreewlrakq eaekesskyf deeqtvltln atsvparvps
     1441 vsswraspea dipeepegdg gsevsphllg keeerrlqee rriqeeaalr fehdrelqel
     1501 elerqrkere qqymeeqrrq aemeeqrrqa emeeqrrqae meeqrrqaer qrqesveipq
     1561 yqrhyeryev sktiedradh plidrhyery evsktieeqp dqsfadrnks kstselnefn
     1621 tirngtqsky serswnatdt qkksqkehnl saaelerqqi lqemrkrtsl htdsswirqr
     1681 sssihkepis lysnsmrrge sldnldssrt sswrhhswmn qsasssslss sqdfsrpvst
     1741 snraymctps sskastaats sraptvsqaa praqsplsts qtgsqtrsrs vsgkkicsyc
     1801 nnvlgkgaam iieslglcyh lhcfkcvacg cdlggsrsga evrirnnklf cndcyirfkt
     1861 gqptsm
//
LOCUS       XP_053919679            1858 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM domain only protein 7 isoform X4 [Cuculus canorus].
ACCESSION   XP_053919679
VERSION     XP_053919679.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063704.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1858
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1858
                     /product="LIM domain only protein 7 isoform X4"
                     /calculated_mol_wt=212171
     Region          14..129
                     /region_name="CH_LMO7"
                     /note="calponin homology (CH) domain found in LIM domain
                     only protein 7; cd21277"
                     /db_xref="CDD:409126"
     Site            order(14,18,68,70..71,74..75,77,87..95,113,115..116,
                     118..119,122..123,126)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409126"
     Region          243..>310
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          755..902
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          1175..1247
                     /region_name="PDZ"
                     /note="Domain present in PSD-95, Dlg, and ZO-1/2;
                     smart00228"
                     /db_xref="CDD:214570"
     Site            order(1176..1180,1193,1196,1225,1230,1233..1234)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467241"
     Region          <1380..>1673
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     CDS             1..1858
                     /gene="LMO7"
                     /coded_by="XM_054063704.1:120..5696"
                     /db_xref="GeneID:104054962"
ORIGIN      
        1 megredaecd cqaafdeaqr wvetvtgksf gtkdfraale ngvllcdlin kikpgvikki
       61 nrlstpiagl dninvflkac eniglkeaql fhpgdlqdls nrvtvkpeet nrrvknvlit
      121 lywlgrkaqs nphyngpyln lksfekllgq altkaleess hlnrsgrdsg ygdiwyvdrg
      181 epfssstshk rddsfdslds lgsrsstsfs sditlkggse gcdsdtdsel pfkmhdshkd
      241 drsyrrisvi epkpttdfnr flpsknkqta yvpaplrkkr teknednrrs waspvftesd
      301 gtfssgrern pvascqnsra eseftnpasi qmiyeydsgs dsederklpd vvmddlakrr
      361 flvkkspvss aapghhfvlh sdspkscsqe nypaaplaam leplsnqrrq rqldtkeenk
      421 prlnipseis gyfdedeeee igipniekdd lyfrklssta antvpfdkfl pkfwtpeeel
      481 lwkkirkssf kpwykeiqgf srkksdseee efaykqssai vanqprpsfd wnscrrdqsy
      541 kptaeyvgss lsqiaegkil easdqpsqfs llqalqkysd ylssetktki dptsgprlik
      601 crknisfvpg ykqgdgengy lypdlenddl firktgafhv npvvlqdpry fkkiseqepf
      661 legeiilqpr egqqvipdle kddmifrkil sqkkevplsg apdtyhpalf pdpwslpeei
      721 rskflcllek nttpeerksn grvlspssrh kkddmltrki eswkvgsniq pvnfipgpcs
      781 eedwkkweai reaskvrhkk rqmverlfqk lsdeqgsksl ndvsaeelqs yrkiryeelq
      841 kikeqlqeqd lkwqedlakw knrrksftse lqkkkeeree ierrtsevsg rrtkslkemq
      901 eeredrdqds ygrqkhenrw tyslnddvfr eekapspqsa akdylleedt sysskdsksa
      961 yatqlhkenl pessatheap alpkslaeeq sstllstrys mnaqtgsaqv saslprsyqk
     1021 tdtsrltsvv tprpfgvhsr gisslprsft mddaqkynge vektkrtqtl ftsssfsqpd
     1081 sahplssgaf rsrgeeeeee kegvqstspp slalpvksqd qdagssilkp eycsppdsls
     1141 lassaehmsl pqpedskyle qysemrisin qrpghsrsfg fttnwsssga fvqtveegsp
     1201 aalsqlhvdd eiiainstkv scmdysqwee aisralktgn lvmdirrygk ndwgkdqpsl
     1261 phirhkilnl tsmatniigt penkwidats geqvsnvstv stkrdfsssl pssdtekkli
     1321 ngmqgdlnsn eqrasepisl knlkrrsqff eqggpepamp dlpvpsisap srrvwdqeee
     1381 rkrqekwqke qdrllqekyk reqeklreew lrakqeaeke sskyfdeeqt vltlnatsvp
     1441 arvpsvsswr aspeadipee pegdggsevs phllgkeeer rlqeerriqe eaalrfehdr
     1501 elqelelerq rkereqqyme eqrrqaemee qrrqaemeeq rrqaemeeqr rqaerqrqes
     1561 veipqyqrhy eryevsktie dradhplidr hyeryevskt ieeqpdqsfa drnkskstse
     1621 lnefntirng tqskysersw natdtqkksq kehnlsaael erqqilqemr krtslhtdss
     1681 wirqrsssih kepislysns mrrgesldnl dssrtsswrh hswmnqsass sslsssqdfs
     1741 rpvstsnray mctpssskas taatssrapt vsqaapraqs plstsqtgsq trssvlpvdv
     1801 tledpalelk lgsettnssa ttaisdlkld nqppceaned lkpllqikee viaadvdl
//
LOCUS       XP_053919689            1852 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM domain only protein 7 isoform X5 [Cuculus canorus].
ACCESSION   XP_053919689
VERSION     XP_053919689.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063714.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1852
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1852
                     /product="LIM domain only protein 7 isoform X5"
                     /calculated_mol_wt=211477
     Region          14..129
                     /region_name="CH_LMO7"
                     /note="calponin homology (CH) domain found in LIM domain
                     only protein 7; cd21277"
                     /db_xref="CDD:409126"
     Site            order(14,18,68,70..71,74..75,77,87..95,113,115..116,
                     118..119,122..123,126)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409126"
     Region          243..>310
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          755..902
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          1175..1247
                     /region_name="PDZ"
                     /note="Domain present in PSD-95, Dlg, and ZO-1/2;
                     smart00228"
                     /db_xref="CDD:214570"
     Site            order(1176..1180,1193,1196,1225,1230,1233..1234)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467241"
     Region          <1361..>1654
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     Region          1783..1841
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cd08368"
                     /db_xref="CDD:259829"
     Site            order(1783,1786,1806,1809,1812,1815,1837,1840)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     CDS             1..1852
                     /gene="LMO7"
                     /coded_by="XM_054063714.1:117..5675"
                     /db_xref="GeneID:104054962"
ORIGIN      
        1 megredaecd cqaafdeaqr wvetvtgksf gtkdfraale ngvllcdlin kikpgvikki
       61 nrlstpiagl dninvflkac eniglkeaql fhpgdlqdls nrvtvkpeet nrrvknvlit
      121 lywlgrkaqs nphyngpyln lksfekllgq altkaleess hlnrsgrdsg ygdiwyvdrg
      181 epfssstshk rddsfdslds lgsrsstsfs sditlkggse gcdsdtdsel pfkmhdshkd
      241 drsyrrisvi epkpttdfnr flpsknkqta yvpaplrkkr teknednrrs waspvftesd
      301 gtfssgrern pvascqnsra eseftnpasi qmiyeydsgs dsederklpd vvmddlakrr
      361 flvkkspvss aapghhfvlh sdspkscsqe nypaaplaam leplsnqrrq rqldtkeenk
      421 prlnipseis gyfdedeeee igipniekdd lyfrklssta antvpfdkfl pkfwtpeeel
      481 lwkkirkssf kpwykeiqgf srkksdseee efaykqssai vanqprpsfd wnscrrdqsy
      541 kptaeyvgss lsqiaegkil easdqpsqfs llqalqkysd ylssetktki dptsgprlik
      601 crknisfvpg ykqgdgengy lypdlenddl firktgafhv npvvlqdpry fkkiseqepf
      661 legeiilqpr egqqvipdle kddmifrkil sqkkevplsg apdtyhpalf pdpwslpeei
      721 rskflcllek nttpeerksn grvlspssrh kkddmltrki eswkvgsniq pvnfipgpcs
      781 eedwkkweai reaskvrhkk rqmverlfqk lsdeqgsksl ndvsaeelqs yrkiryeelq
      841 kikeqlqeqd lkwqedlakw knrrksftse lqkkkeeree ierrtsevsg rrtkslkemq
      901 eeredrdqds ygrqkhenrw tyslnddvfr eekapspqsa akdylleedt sysskdsksa
      961 yatqlhkenl pessatheap alpkslaeeq sstllstrys mnaqtgsaqv saslprsyqk
     1021 tdtsrltsvv tprpfgvhsr gisslprsft mddaqkynge vektkrtqtl ftsssfsqpd
     1081 sahplssgaf rsrgeeeeee kegvqstspp slalpvksqd qdagssilkp eycsppdsls
     1141 lassaehmsl pqpedskyle qysemrisin qrpghsrsfg fttnwsssga fvqtveegsp
     1201 aalsqlhvdd eiiainstkv scmdysqwee aisralktgn lvmdirrygk ndwgkdqpsl
     1261 phirhkilnl tsmatniigt penkwidats geqvsnvstv stkrdfsssl pssdtekkli
     1321 ngmqgdlnsn eqrggpepam pdlpvpsisa psrrvwdqee erkrqekwqk eqdrllqeky
     1381 kreqeklree wlrakqeaek esskyfdeeq tvltlnatsv parvpsvssw raspeadipe
     1441 epegdggsev sphllgkeee rrlqeerriq eeaalrfehd relqeleler qrkereqqym
     1501 eeqrrqaeme eqrrqaemee qrrqaemeeq rrqaerqrqe sveipqyqrh yeryevskti
     1561 edradhplid rhyeryevsk tieeqpdqsf adrnksksts elnefntirn gtqskysers
     1621 wnatdtqkks qkehnlsaae lerqqilqem rkrtslhtds swirqrsssi hkepislysn
     1681 smrrgesldn ldssrtsswr hhswmnqsas ssslsssqdf srpvstsnra ymctpssska
     1741 staatssrap tvsqaapraq splstsqtgs qtrsrsvsgk kicsycnnvl gkgaamiies
     1801 lglcyhlhcf kcvacgcdlg gsrsgaevri rnnklfcndc yirfktgqpt sm
//
LOCUS       XP_053919699            1844 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM domain only protein 7 isoform X6 [Cuculus canorus].
ACCESSION   XP_053919699
VERSION     XP_053919699.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063724.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1844
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1844
                     /product="LIM domain only protein 7 isoform X6"
                     /calculated_mol_wt=210656
     Region          14..129
                     /region_name="CH_LMO7"
                     /note="calponin homology (CH) domain found in LIM domain
                     only protein 7; cd21277"
                     /db_xref="CDD:409126"
     Site            order(14,18,68,70..71,74..75,77,87..95,113,115..116,
                     118..119,122..123,126)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409126"
     Region          243..>310
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          755..902
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          1175..1247
                     /region_name="PDZ"
                     /note="Domain present in PSD-95, Dlg, and ZO-1/2;
                     smart00228"
                     /db_xref="CDD:214570"
     Site            order(1176..1180,1193,1196,1225,1230,1233..1234)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467241"
     Region          <1353..>1646
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     Region          1775..1833
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cd08368"
                     /db_xref="CDD:259829"
     Site            order(1775,1778,1798,1801,1804,1807,1829,1832)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     CDS             1..1844
                     /gene="LMO7"
                     /coded_by="XM_054063724.1:116..5650"
                     /db_xref="GeneID:104054962"
ORIGIN      
        1 megredaecd cqaafdeaqr wvetvtgksf gtkdfraale ngvllcdlin kikpgvikki
       61 nrlstpiagl dninvflkac eniglkeaql fhpgdlqdls nrvtvkpeet nrrvknvlit
      121 lywlgrkaqs nphyngpyln lksfekllgq altkaleess hlnrsgrdsg ygdiwyvdrg
      181 epfssstshk rddsfdslds lgsrsstsfs sditlkggse gcdsdtdsel pfkmhdshkd
      241 drsyrrisvi epkpttdfnr flpsknkqta yvpaplrkkr teknednrrs waspvftesd
      301 gtfssgrern pvascqnsra eseftnpasi qmiyeydsgs dsederklpd vvmddlakrr
      361 flvkkspvss aapghhfvlh sdspkscsqe nypaaplaam leplsnqrrq rqldtkeenk
      421 prlnipseis gyfdedeeee igipniekdd lyfrklssta antvpfdkfl pkfwtpeeel
      481 lwkkirkssf kpwykeiqgf srkksdseee efaykqssai vanqprpsfd wnscrrdqsy
      541 kptaeyvgss lsqiaegkil easdqpsqfs llqalqkysd ylssetktki dptsgprlik
      601 crknisfvpg ykqgdgengy lypdlenddl firktgafhv npvvlqdpry fkkiseqepf
      661 legeiilqpr egqqvipdle kddmifrkil sqkkevplsg apdtyhpalf pdpwslpeei
      721 rskflcllek nttpeerksn grvlspssrh kkddmltrki eswkvgsniq pvnfipgpcs
      781 eedwkkweai reaskvrhkk rqmverlfqk lsdeqgsksl ndvsaeelqs yrkiryeelq
      841 kikeqlqeqd lkwqedlakw knrrksftse lqkkkeeree ierrtsevsg rrtkslkemq
      901 eeredrdqds ygrqkhenrw tyslnddvfr eekapspqsa akdylleedt sysskdsksa
      961 yatqlhkenl pessatheap alpkslaeeq sstllstrys mnaqtgsaqv saslprsyqk
     1021 tdtsrltsvv tprpfgvhsr gisslprsft mddaqkynge vektkrtqtl ftsssfsqpd
     1081 sahplssgaf rsrgeeeeee kegvqstspp slalpvksqd qdagssilkp eycsppdsls
     1141 lassaehmsl pqpedskyle qysemrisin qrpghsrsfg fttnwsssga fvqtveegsp
     1201 aalsqlhvdd eiiainstkv scmdysqwee aisralktgn lvmdirrygk ngtpenkwid
     1261 atsgeqvsnv stvstkrdfs sslpssdtek klingmqgdl nsneqrasep islknlkrrs
     1321 qffeqggpep ampdlpvpsi sapsrrvwdq eeerkrqekw qkeqdrllqe kykreqeklr
     1381 eewlrakqea ekesskyfde eqtvltlnat svparvpsvs swraspeadi peepegdggs
     1441 evsphllgke eerrlqeerr iqeeaalrfe hdrelqelel erqrkereqq ymeeqrrqae
     1501 meeqrrqaem eeqrrqaeme eqrrqaerqr qesveipqyq rhyeryevsk tiedradhpl
     1561 idrhyeryev sktieeqpdq sfadrnksks tselnefnti rngtqskyse rswnatdtqk
     1621 ksqkehnlsa aelerqqilq emrkrtslht dsswirqrss sihkepisly snsmrrgesl
     1681 dnldssrtss wrhhswmnqs asssslsssq dfsrpvstsn raymctpsss kastaatssr
     1741 aptvsqaapr aqsplstsqt gsqtrsrsvs gkkicsycnn vlgkgaamii eslglcyhlh
     1801 cfkcvacgcd lggsrsgaev rirnnklfcn dcyirfktgq ptsm
//
LOCUS       XP_053919708            1771 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM domain only protein 7 isoform X7 [Cuculus canorus].
ACCESSION   XP_053919708
VERSION     XP_053919708.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063733.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1771
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1771
                     /product="LIM domain only protein 7 isoform X7"
                     /calculated_mol_wt=202762
     Region          14..129
                     /region_name="CH_LMO7"
                     /note="calponin homology (CH) domain found in LIM domain
                     only protein 7; cd21277"
                     /db_xref="CDD:409126"
     Site            order(14,18,68,70..71,74..75,77,87..95,113,115..116,
                     118..119,122..123,126)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409126"
     Region          243..>304
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          655..802
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          1075..1147
                     /region_name="PDZ"
                     /note="Domain present in PSD-95, Dlg, and ZO-1/2;
                     smart00228"
                     /db_xref="CDD:214570"
     Site            order(1076..1080,1093,1096,1125,1130,1133..1134)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467241"
     Region          <1280..>1573
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     Region          1702..1760
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cd08368"
                     /db_xref="CDD:259829"
     Site            order(1702,1705,1725,1728,1731,1734,1756,1759)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     CDS             1..1771
                     /gene="LMO7"
                     /coded_by="XM_054063733.1:115..5430"
                     /db_xref="GeneID:104054962"
ORIGIN      
        1 megredaecd cqaafdeaqr wvetvtgksf gtkdfraale ngvllcdlin kikpgvikki
       61 nrlstpiagl dninvflkac eniglkeaql fhpgdlqdls nrvtvkpeet nrrvknvlit
      121 lywlgrkaqs nphyngpyln lksfekllgq altkaleess hlnrsgrdsg ygdiwyvdrg
      181 epfssstshk rddsfdslds lgsrsstsfs sditlkggse gcdsdtdsel pfkmhdshkd
      241 drsyrrisvi epkpttdfnr flpsknkqta yvpaplrkkr teknednrrs waspvftesd
      301 gtfssnqrrq rqldtkeenk prlnipseis gyfdedeeee igipniekdd lyfrklssta
      361 antvpfdkfl pkfwtpeeel lwkkirkssf kpwykeiqgf srkksdseee efaykqssai
      421 vanqprpsfd wnscrrdqsy kptaeyvgss lsqiaegkil easdqpsqfs llqalqkysd
      481 ylssetktki dptsgprlik crknisfvpg ykqgdgengy lypdlenddl firktgafhv
      541 npvvlqdpry fkkiseqepf legeiilqpr egqqvipdle kddmifrkil sqkkevplsg
      601 apdtyhpalf pdpwslpeei rskflcllek nttpeerksn grvlspssrh kkddmltrki
      661 eswkvgsniq pvnfipgpcs eedwkkweai reaskvrhkk rqmverlfqk lsdeqgsksl
      721 ndvsaeelqs yrkiryeelq kikeqlqeqd lkwqedlakw knrrksftse lqkkkeeree
      781 ierrtsevsg rrtkslkemq eeredrdqds ygrqkhenrw tyslnddvfr eekapspqsa
      841 akdylleedt sysskdsksa yatqlhkenl pessatheap alpkslaeeq sstllstrys
      901 mnaqtgsaqv saslprsyqk tdtsrltsvv tprpfgvhsr gisslprsft mddaqkynge
      961 vektkrtqtl ftsssfsqpd sahplssgaf rsrgeeeeee kegvqstspp slalpvksqd
     1021 qdagssilkp eycsppdsls lassaehmsl pqpedskyle qysemrisin qrpghsrsfg
     1081 fttnwsssga fvqtveegsp aalsqlhvdd eiiainstkv scmdysqwee aisralktgn
     1141 lvmdirrygk ndwgkdqpsl phirhkilnl tsmatniigt penkwidats geqvsnvstv
     1201 stkrdfsssl pssdtekkli ngmqgdlnsn eqrasepisl knlkrrsqff eqggpepamp
     1261 dlpvpsisap srrvwdqeee rkrqekwqke qdrllqekyk reqeklreew lrakqeaeke
     1321 sskyfdeeqt vltlnatsvp arvpsvsswr aspeadipee pegdggsevs phllgkeeer
     1381 rlqeerriqe eaalrfehdr elqelelerq rkereqqyme eqrrqaemee qrrqaemeeq
     1441 rrqaemeeqr rqaerqrqes veipqyqrhy eryevsktie dradhplidr hyeryevskt
     1501 ieeqpdqsfa drnkskstse lnefntirng tqskysersw natdtqkksq kehnlsaael
     1561 erqqilqemr krtslhtdss wirqrsssih kepislysns mrrgesldnl dssrtsswrh
     1621 hswmnqsass sslsssqdfs rpvstsnray mctpssskas taatssrapt vsqaapraqs
     1681 plstsqtgsq trsrsvsgkk icsycnnvlg kgaamiiesl glcyhlhcfk cvacgcdlgg
     1741 srsgaevrir nnklfcndcy irfktgqpts m
//
LOCUS       XP_053919713            1675 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM domain only protein 7 isoform X8 [Cuculus canorus].
ACCESSION   XP_053919713
VERSION     XP_053919713.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063738.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1675
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1675
                     /product="LIM domain only protein 7 isoform X8"
                     /calculated_mol_wt=191194
     Region          14..129
                     /region_name="CH_LMO7"
                     /note="calponin homology (CH) domain found in LIM domain
                     only protein 7; cd21277"
                     /db_xref="CDD:409126"
     Site            order(14,18,68,70..71,74..75,77,87..95,113,115..116,
                     118..119,122..123,126)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409126"
     Region          243..>315
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          559..706
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          979..1051
                     /region_name="PDZ"
                     /note="Domain present in PSD-95, Dlg, and ZO-1/2;
                     smart00228"
                     /db_xref="CDD:214570"
     Site            order(980..984,997,1000,1029,1034,1037..1038)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467241"
     Region          <1184..>1477
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     Region          1606..1664
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cd08368"
                     /db_xref="CDD:259829"
     Site            order(1606,1609,1629,1632,1635,1638,1660,1663)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     CDS             1..1675
                     /gene="LMO7"
                     /coded_by="XM_054063738.1:113..5140"
                     /db_xref="GeneID:104054962"
ORIGIN      
        1 megredaecd cqaafdeaqr wvetvtgksf gtkdfraale ngvllcdlin kikpgvikki
       61 nrlstpiagl dninvflkac eniglkeaql fhpgdlqdls nrvtvkpeet nrrvknvlit
      121 lywlgrkaqs nphyngpyln lksfekllgq altkaleess hlnrsgrdsg ygdiwyvdrg
      181 epfssstshk rddsfdslds lgsrsstsfs sditlkggse gcdsdtdsel pfkmhdshkd
      241 drsyrrisvi epkpttdfnr flpsknkqta yvpaplrkkr teknednrrs waspvftesd
      301 gtfssrkksd seeeefaykq ssaivanqpr psfdwnscrr dqsykptaey vgsslsqiae
      361 gkileasdqp sqfsllqalq kysdylsset ktkidptsgp rlikcrknis fvpgykqgdg
      421 engylypdle nddlfirktg afhvnpvvlq dpryfkkise qepflegeii lqpregqqvi
      481 pdlekddmif rkilsqkkev plsgapdtyh palfpdpwsl peeirskflc lleknttpee
      541 rksngrvlsp ssrhkkddml trkieswkvg sniqpvnfip gpcseedwkk weaireaskv
      601 rhkkrqmver lfqklsdeqg skslndvsae elqsyrkiry eelqkikeql qeqdlkwqed
      661 lakwknrrks ftselqkkke ereeierrts evsgrrtksl kemqeeredr dqdsygrqkh
      721 enrwtyslnd dvfreekaps pqsaakdyll eedtsysskd sksayatqlh kenlpessat
      781 heapalpksl aeeqsstlls trysmnaqtg saqvsaslpr syqktdtsrl tsvvtprpfg
      841 vhsrgisslp rsftmddaqk yngevektkr tqtlftsssf sqpdsahpls sgafrsrgee
      901 eeeekegvqs tsppslalpv ksqdqdagss ilkpeycspp dslslassae hmslpqpeds
      961 kyleqysemr isinqrpghs rsfgfttnws ssgafvqtve egspaalsql hvddeiiain
     1021 stkvscmdys qweeaisral ktgnlvmdir rygkndwgkd qpslphirhk ilnltsmatn
     1081 iigtpenkwi datsgeqvsn vstvstkrdf ssslpssdte kklingmqgd lnsneqrase
     1141 pislknlkrr sqffeqggpe pampdlpvps isapsrrvwd qeeerkrqek wqkeqdrllq
     1201 ekykreqekl reewlrakqe aekesskyfd eeqtvltlna tsvparvpsv sswraspead
     1261 ipeepegdgg sevsphllgk eeerrlqeer riqeeaalrf ehdrelqele lerqrkereq
     1321 qymeeqrrqa emeeqrrqae meeqrrqaem eeqrrqaerq rqesveipqy qrhyeryevs
     1381 ktiedradhp lidrhyerye vsktieeqpd qsfadrnksk stselnefnt irngtqskys
     1441 erswnatdtq kksqkehnls aaelerqqil qemrkrtslh tdsswirqrs ssihkepisl
     1501 ysnsmrrges ldnldssrts swrhhswmnq sasssslsss qdfsrpvsts nraymctpss
     1561 skastaatss raptvsqaap raqsplstsq tgsqtrsrsv sgkkicsycn nvlgkgaami
     1621 ieslglcyhl hcfkcvacgc dlggsrsgae vrirnnklfc ndcyirfktg qptsm
//
LOCUS       XP_053919721            1674 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM domain only protein 7 isoform X9 [Cuculus canorus].
ACCESSION   XP_053919721
VERSION     XP_053919721.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063746.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1674
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1674
                     /product="LIM domain only protein 7 isoform X9"
                     /calculated_mol_wt=191107
     Region          14..129
                     /region_name="CH_LMO7"
                     /note="calponin homology (CH) domain found in LIM domain
                     only protein 7; cd21277"
                     /db_xref="CDD:409126"
     Site            order(14,18,68,70..71,74..75,77,87..95,113,115..116,
                     118..119,122..123,126)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409126"
     Region          243..>312
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          558..705
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          978..1050
                     /region_name="PDZ"
                     /note="Domain present in PSD-95, Dlg, and ZO-1/2;
                     smart00228"
                     /db_xref="CDD:214570"
     Site            order(979..983,996,999,1028,1033,1036..1037)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467241"
     Region          <1183..>1476
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     Region          1605..1663
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cd08368"
                     /db_xref="CDD:259829"
     Site            order(1605,1608,1628,1631,1634,1637,1659,1662)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     CDS             1..1674
                     /gene="LMO7"
                     /coded_by="XM_054063746.1:113..5137"
                     /db_xref="GeneID:104054962"
ORIGIN      
        1 megredaecd cqaafdeaqr wvetvtgksf gtkdfraale ngvllcdlin kikpgvikki
       61 nrlstpiagl dninvflkac eniglkeaql fhpgdlqdls nrvtvkpeet nrrvknvlit
      121 lywlgrkaqs nphyngpyln lksfekllgq altkaleess hlnrsgrdsg ygdiwyvdrg
      181 epfssstshk rddsfdslds lgsrsstsfs sditlkggse gcdsdtdsel pfkmhdshkd
      241 drsyrrisvi epkpttdfnr flpsknkqta yvpaplrkkr teknednrrs waspvftesd
      301 gtfsrkksds eeeefaykqs saivanqprp sfdwnscrrd qsykptaeyv gsslsqiaeg
      361 kileasdqps qfsllqalqk ysdylssetk tkidptsgpr likcrknisf vpgykqgdge
      421 ngylypdlen ddlfirktga fhvnpvvlqd pryfkkiseq epflegeiil qpregqqvip
      481 dlekddmifr kilsqkkevp lsgapdtyhp alfpdpwslp eeirskflcl leknttpeer
      541 ksngrvlsps srhkkddmlt rkieswkvgs niqpvnfipg pcseedwkkw eaireaskvr
      601 hkkrqmverl fqklsdeqgs kslndvsaee lqsyrkirye elqkikeqlq eqdlkwqedl
      661 akwknrrksf tselqkkkee reeierrtse vsgrrtkslk emqeeredrd qdsygrqkhe
      721 nrwtyslndd vfreekapsp qsaakdylle edtsysskds ksayatqlhk enlpessath
      781 eapalpksla eeqsstllst rysmnaqtgs aqvsaslprs yqktdtsrlt svvtprpfgv
      841 hsrgisslpr sftmddaqky ngevektkrt qtlftsssfs qpdsahplss gafrsrgeee
      901 eeekegvqst sppslalpvk sqdqdagssi lkpeycsppd slslassaeh mslpqpedsk
      961 yleqysemri sinqrpghsr sfgfttnwss sgafvqtvee gspaalsqlh vddeiiains
     1021 tkvscmdysq weeaisralk tgnlvmdirr ygkndwgkdq pslphirhki lnltsmatni
     1081 igtpenkwid atsgeqvsnv stvstkrdfs sslpssdtek klingmqgdl nsneqrasep
     1141 islknlkrrs qffeqggpep ampdlpvpsi sapsrrvwdq eeerkrqekw qkeqdrllqe
     1201 kykreqeklr eewlrakqea ekesskyfde eqtvltlnat svparvpsvs swraspeadi
     1261 peepegdggs evsphllgke eerrlqeerr iqeeaalrfe hdrelqelel erqrkereqq
     1321 ymeeqrrqae meeqrrqaem eeqrrqaeme eqrrqaerqr qesveipqyq rhyeryevsk
     1381 tiedradhpl idrhyeryev sktieeqpdq sfadrnksks tselnefnti rngtqskyse
     1441 rswnatdtqk ksqkehnlsa aelerqqilq emrkrtslht dsswirqrss sihkepisly
     1501 snsmrrgesl dnldssrtss wrhhswmnqs asssslsssq dfsrpvstsn raymctpsss
     1561 kastaatssr aptvsqaapr aqsplstsqt gsqtrsrsvs gkkicsycnn vlgkgaamii
     1621 eslglcyhlh cfkcvacgcd lggsrsgaev rirnnklfcn dcyirfktgq ptsm
//
LOCUS       XP_053919728            1638 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM domain only protein 7 isoform X10 [Cuculus canorus].
ACCESSION   XP_053919728
VERSION     XP_053919728.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063753.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1638
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1638
                     /product="LIM domain only protein 7 isoform X10"
                     /calculated_mol_wt=187926
     Region          10..>77
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          522..669
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          942..1014
                     /region_name="PDZ"
                     /note="Domain present in PSD-95, Dlg, and ZO-1/2;
                     smart00228"
                     /db_xref="CDD:214570"
     Site            order(943..947,960,963,992,997,1000..1001)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467241"
     Region          <1147..>1440
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     Region          1569..1627
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cd08368"
                     /db_xref="CDD:259829"
     Site            order(1569,1572,1592,1595,1598,1601,1623,1626)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     CDS             1..1638
                     /gene="LMO7"
                     /coded_by="XM_054063753.1:525..5441"
                     /db_xref="GeneID:104054962"
ORIGIN      
        1 mhdshkddrs yrrisviepk pttdfnrflp sknkqtayvp aplrkkrtek nednrrswas
       61 pvftesdgtf ssgrernpva scqnsraese ftnpasiqmi yeydsgsdse derklpdvvm
      121 ddlakrrflv kkspvssaap ghhfvlhsds pkscsqenyp aaplaamlep lsnqrrqrql
      181 dtkeenkprl nipseisgyf dedeeeeigi pniekddlyf rklsstaant vpfdkflpkf
      241 wtpeeellwk kirkssfkpw ykeiqgfsrk ksdseeeefa ykqssaivan qprpsfdwns
      301 crrdqsykpt aeyvgsslsq iaegkileas dqpsqfsllq alqkysdyls setktkidpt
      361 sgprlikcrk nisfvpgykq gdgengylyp dlenddlfir ktgafhvnpv vlqdpryfkk
      421 iseqepfleg eiilqpregq qvipdlekdd mifrkilsqk kevplsgapd tyhpalfpdp
      481 wslpeeirsk flcllekntt peerksngrv lspssrhkkd dmltrkiesw kvgsniqpvn
      541 fipgpcseed wkkweairea skvrhkkrqm verlfqklsd eqgskslndv saeelqsyrk
      601 iryeelqkik eqlqeqdlkw qedlakwknr rksftselqk kkeereeier rtsevsgrrt
      661 kslkemqeer edrdqdsygr qkhenrwtys lnddvfreek apspqsaakd ylleedtsys
      721 skdsksayat qlhkenlpes satheapalp kslaeeqsst llstrysmna qtgsaqvsas
      781 lprsyqktdt srltsvvtpr pfgvhsrgis slprsftmdd aqkyngevek tkrtqtlfts
      841 ssfsqpdsah plssgafrsr geeeeeekeg vqstsppsla lpvksqdqda gssilkpeyc
      901 sppdslslas saehmslpqp edskyleqys emrisinqrp ghsrsfgftt nwsssgafvq
      961 tveegspaal sqlhvddeii ainstkvscm dysqweeais ralktgnlvm dirrygkndw
     1021 gkdqpslphi rhkilnltsm atniigtpen kwidatsgeq vsnvstvstk rdfssslpss
     1081 dtekklingm qgdlnsneqr asepislknl krrsqffeqg gpepampdlp vpsisapsrr
     1141 vwdqeeerkr qekwqkeqdr llqekykreq eklreewlra kqeaekessk yfdeeqtvlt
     1201 lnatsvparv psvsswrasp eadipeepeg dggsevsphl lgkeeerrlq eerriqeeaa
     1261 lrfehdrelq elelerqrke reqqymeeqr rqaemeeqrr qaemeeqrrq aemeeqrrqa
     1321 erqrqesvei pqyqrhyery evsktiedra dhplidrhye ryevsktiee qpdqsfadrn
     1381 kskstselne fntirngtqs kyserswnat dtqkksqkeh nlsaaelerq qilqemrkrt
     1441 slhtdsswir qrsssihkep islysnsmrr gesldnldss rtsswrhhsw mnqsassssl
     1501 sssqdfsrpv stsnraymct pssskastaa tssraptvsq aapraqspls tsqtgsqtrs
     1561 rsvsgkkics ycnnvlgkga amiieslglc yhlhcfkcva cgcdlggsrs gaevrirnnk
     1621 lfcndcyirf ktgqptsm
//
LOCUS       XP_053919737            1609 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM domain only protein 7 isoform X11 [Cuculus canorus].
ACCESSION   XP_053919737
VERSION     XP_053919737.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063762.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1609
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1609
                     /product="LIM domain only protein 7 isoform X11"
                     /calculated_mol_wt=183783
     Region          14..129
                     /region_name="CH_LMO7"
                     /note="calponin homology (CH) domain found in LIM domain
                     only protein 7; cd21277"
                     /db_xref="CDD:409126"
     Site            order(14,18,68,70..71,74..75,77,87..95,113,115..116,
                     118..119,122..123,126)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409126"
     Region          243..>307
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          493..640
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          913..985
                     /region_name="PDZ"
                     /note="Domain present in PSD-95, Dlg, and ZO-1/2;
                     smart00228"
                     /db_xref="CDD:214570"
     Site            order(914..918,931,934,963,968,971..972)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467241"
     Region          <1118..>1411
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     Region          1540..1598
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cd08368"
                     /db_xref="CDD:259829"
     Site            order(1540,1543,1563,1566,1569,1572,1594,1597)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     CDS             1..1609
                     /gene="LMO7"
                     /coded_by="XM_054063762.1:111..4940"
                     /db_xref="GeneID:104054962"
ORIGIN      
        1 megredaecd cqaafdeaqr wvetvtgksf gtkdfraale ngvllcdlin kikpgvikki
       61 nrlstpiagl dninvflkac eniglkeaql fhpgdlqdls nrvtvkpeet nrrvknvlit
      121 lywlgrkaqs nphyngpyln lksfekllgq altkaleess hlnrsgrdsg ygdiwyvdrg
      181 epfssstshk rddsfdslds lgsrsstsfs sditlkggse gcdsdtdsel pfkmhdshkd
      241 drsyrrisvi epkpttdfnr flpsknkqta yvpaplrkkr teknednrrs waspvftesd
      301 gtfssqfsll qalqkysdyl ssetktkidp tsgprlikcr knisfvpgyk qgdgengyly
      361 pdlenddlfi rktgafhvnp vvlqdpryfk kiseqepfle geiilqpreg qqvipdlekd
      421 dmifrkilsq kkevplsgap dtyhpalfpd pwslpeeirs kflclleknt tpeerksngr
      481 vlspssrhkk ddmltrkies wkvgsniqpv nfipgpcsee dwkkweaire askvrhkkrq
      541 mverlfqkls deqgskslnd vsaeelqsyr kiryeelqki keqlqeqdlk wqedlakwkn
      601 rrksftselq kkkeereeie rrtsevsgrr tkslkemqee redrdqdsyg rqkhenrwty
      661 slnddvfree kapspqsaak dylleedtsy sskdsksaya tqlhkenlpe ssatheapal
      721 pkslaeeqss tllstrysmn aqtgsaqvsa slprsyqktd tsrltsvvtp rpfgvhsrgi
      781 sslprsftmd daqkyngeve ktkrtqtlft sssfsqpdsa hplssgafrs rgeeeeeeke
      841 gvqstsppsl alpvksqdqd agssilkpey csppdslsla ssaehmslpq pedskyleqy
      901 semrisinqr pghsrsfgft tnwsssgafv qtveegspaa lsqlhvddei iainstkvsc
      961 mdysqweeai sralktgnlv mdirrygknd wgkdqpslph irhkilnlts matniigtpe
     1021 nkwidatsge qvsnvstvst krdfssslps sdtekkling mqgdlnsneq rasepislkn
     1081 lkrrsqffeq ggpepampdl pvpsisapsr rvwdqeeerk rqekwqkeqd rllqekykre
     1141 qeklreewlr akqeaekess kyfdeeqtvl tlnatsvpar vpsvsswras peadipeepe
     1201 gdggsevsph llgkeeerrl qeerriqeea alrfehdrel qelelerqrk ereqqymeeq
     1261 rrqaemeeqr rqaemeeqrr qaemeeqrrq aerqrqesve ipqyqrhyer yevsktiedr
     1321 adhplidrhy eryevsktie eqpdqsfadr nkskstseln efntirngtq skyserswna
     1381 tdtqkksqke hnlsaaeler qqilqemrkr tslhtdsswi rqrsssihke pislysnsmr
     1441 rgesldnlds srtsswrhhs wmnqsassss lsssqdfsrp vstsnraymc tpssskasta
     1501 atssraptvs qaapraqspl stsqtgsqtr srsvsgkkic sycnnvlgkg aamiieslgl
     1561 cyhlhcfkcv acgcdlggsr sgaevrirnn klfcndcyir fktgqptsm
//
LOCUS       XP_053919743            1370 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM domain only protein 7 isoform X12 [Cuculus canorus].
ACCESSION   XP_053919743
VERSION     XP_053919743.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063768.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1370
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1370
                     /product="LIM domain only protein 7 isoform X12"
                     /calculated_mol_wt=156125
     Region          14..129
                     /region_name="CH_LMO7"
                     /note="calponin homology (CH) domain found in LIM domain
                     only protein 7; cd21277"
                     /db_xref="CDD:409126"
     Site            order(14,18,68,70..71,74..75,77,87..95,113,115..116,
                     118..119,122..123,126)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409126"
     Region          243..401
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          674..746
                     /region_name="PDZ"
                     /note="Domain present in PSD-95, Dlg, and ZO-1/2;
                     smart00228"
                     /db_xref="CDD:214570"
     Site            order(675..679,692,695,724,729,732..733)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467241"
     Region          <879..>1172
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     Region          1301..1359
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cd08368"
                     /db_xref="CDD:259829"
     Site            order(1301,1304,1324,1327,1330,1333,1355,1358)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     CDS             1..1370
                     /gene="LMO7"
                     /coded_by="XM_054063768.1:104..4216"
                     /db_xref="GeneID:104054962"
ORIGIN      
        1 megredaecd cqaafdeaqr wvetvtgksf gtkdfraale ngvllcdlin kikpgvikki
       61 nrlstpiagl dninvflkac eniglkeaql fhpgdlqdls nrvtvkpeet nrrvknvlit
      121 lywlgrkaqs nphyngpyln lksfekllgq altkaleess hlnrsgrdsg ygdiwyvdrg
      181 epfssstshk rddsfdslds lgsrsstsfs sditlkggse gcdsdtdsel pfkmhdshkd
      241 drsyrrisvi epkpttdfnr flpsknkqta yvpaplrkkr teknednrrs waspvftesd
      301 gtfsrlfqkl sdeqgsksln dvsaeelqsy rkiryeelqk ikeqlqeqdl kwqedlakwk
      361 nrrksftsel qkkkeereei errtsevsgr rtkslkemqe eredrdqdsy grqkhenrwt
      421 yslnddvfre ekapspqsaa kdylleedts ysskdsksay atqlhkenlp essatheapa
      481 lpkslaeeqs stllstrysm naqtgsaqvs aslprsyqkt dtsrltsvvt prpfgvhsrg
      541 isslprsftm ddaqkyngev ektkrtqtlf tsssfsqpds ahplssgafr srgeeeeeek
      601 egvqstspps lalpvksqdq dagssilkpe ycsppdslsl assaehmslp qpedskyleq
      661 ysemrisinq rpghsrsfgf ttnwsssgaf vqtveegspa alsqlhvdde iiainstkvs
      721 cmdysqweea isralktgnl vmdirrygkn dwgkdqpslp hirhkilnlt smatniigtp
      781 enkwidatsg eqvsnvstvs tkrdfssslp ssdtekklin gmqgdlnsne qrasepislk
      841 nlkrrsqffe qggpepampd lpvpsisaps rrvwdqeeer krqekwqkeq drllqekykr
      901 eqeklreewl rakqeaekes skyfdeeqtv ltlnatsvpa rvpsvsswra speadipeep
      961 egdggsevsp hllgkeeerr lqeerriqee aalrfehdre lqelelerqr kereqqymee
     1021 qrrqaemeeq rrqaemeeqr rqaemeeqrr qaerqrqesv eipqyqrhye ryevsktied
     1081 radhplidrh yeryevskti eeqpdqsfad rnkskstsel nefntirngt qskyserswn
     1141 atdtqkksqk ehnlsaaele rqqilqemrk rtslhtdssw irqrsssihk epislysnsm
     1201 rrgesldnld ssrtsswrhh swmnqsasss slsssqdfsr pvstsnraym ctpssskast
     1261 aatssraptv sqaapraqsp lstsqtgsqt rsrsvsgkki csycnnvlgk gaamiieslg
     1321 lcyhlhcfkc vacgcdlggs rsgaevrirn nklfcndcyi rfktgqptsm
//
LOCUS       XP_053919751            1360 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM domain only protein 7 isoform X13 [Cuculus canorus].
ACCESSION   XP_053919751
VERSION     XP_053919751.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063776.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1360
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1360
                     /product="LIM domain only protein 7 isoform X13"
                     /calculated_mol_wt=154979
     Region          14..129
                     /region_name="CH_LMO7"
                     /note="calponin homology (CH) domain found in LIM domain
                     only protein 7; cd21277"
                     /db_xref="CDD:409126"
     Site            order(14,18,68,70..71,74..75,77,87..95,113,115..116,
                     118..119,122..123,126)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409126"
     Region          243..391
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          664..736
                     /region_name="PDZ"
                     /note="Domain present in PSD-95, Dlg, and ZO-1/2;
                     smart00228"
                     /db_xref="CDD:214570"
     Site            order(665..669,682,685,714,719,722..723)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467241"
     Region          <869..>1162
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     Region          1291..1349
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cd08368"
                     /db_xref="CDD:259829"
     Site            order(1291,1294,1314,1317,1320,1323,1345,1348)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     CDS             1..1360
                     /gene="LMO7"
                     /coded_by="XM_054063776.1:103..4185"
                     /db_xref="GeneID:104054962"
ORIGIN      
        1 megredaecd cqaafdeaqr wvetvtgksf gtkdfraale ngvllcdlin kikpgvikki
       61 nrlstpiagl dninvflkac eniglkeaql fhpgdlqdls nrvtvkpeet nrrvknvlit
      121 lywlgrkaqs nphyngpyln lksfekllgq altkaleess hlnrsgrdsg ygdiwyvdrg
      181 epfssstshk rddsfdslds lgsrsstsfs sditlkggse gcdsdtdsel pfkmhdshkd
      241 drsyrrisvi epkpttdfnr flpsknkqta yvpaplrkkr teknednrrs waspvftesd
      301 gtfsrsksln dvsaeelqsy rkiryeelqk ikeqlqeqdl kwqedlakwk nrrksftsel
      361 qkkkeereei errtsevsgr rtkslkemqe eredrdqdsy grqkhenrwt yslnddvfre
      421 ekapspqsaa kdylleedts ysskdsksay atqlhkenlp essatheapa lpkslaeeqs
      481 stllstrysm naqtgsaqvs aslprsyqkt dtsrltsvvt prpfgvhsrg isslprsftm
      541 ddaqkyngev ektkrtqtlf tsssfsqpds ahplssgafr srgeeeeeek egvqstspps
      601 lalpvksqdq dagssilkpe ycsppdslsl assaehmslp qpedskyleq ysemrisinq
      661 rpghsrsfgf ttnwsssgaf vqtveegspa alsqlhvdde iiainstkvs cmdysqweea
      721 isralktgnl vmdirrygkn dwgkdqpslp hirhkilnlt smatniigtp enkwidatsg
      781 eqvsnvstvs tkrdfssslp ssdtekklin gmqgdlnsne qrasepislk nlkrrsqffe
      841 qggpepampd lpvpsisaps rrvwdqeeer krqekwqkeq drllqekykr eqeklreewl
      901 rakqeaekes skyfdeeqtv ltlnatsvpa rvpsvsswra speadipeep egdggsevsp
      961 hllgkeeerr lqeerriqee aalrfehdre lqelelerqr kereqqymee qrrqaemeeq
     1021 rrqaemeeqr rqaemeeqrr qaerqrqesv eipqyqrhye ryevsktied radhplidrh
     1081 yeryevskti eeqpdqsfad rnkskstsel nefntirngt qskyserswn atdtqkksqk
     1141 ehnlsaaele rqqilqemrk rtslhtdssw irqrsssihk epislysnsm rrgesldnld
     1201 ssrtsswrhh swmnqsasss slsssqdfsr pvstsnraym ctpssskast aatssraptv
     1261 sqaapraqsp lstsqtgsqt rsrsvsgkki csycnnvlgk gaamiieslg lcyhlhcfkc
     1321 vacgcdlggs rsgaevrirn nklfcndcyi rfktgqptsm
//
LOCUS       XP_053919757            1744 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM domain only protein 7 isoform X14 [Cuculus canorus].
ACCESSION   XP_053919757
VERSION     XP_053919757.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063782.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1744
                     /product="LIM domain only protein 7 isoform X14"
                     /calculated_mol_wt=199680
     Region          14..129
                     /region_name="CH_LMO7"
                     /note="calponin homology (CH) domain found in LIM domain
                     only protein 7; cd21277"
                     /db_xref="CDD:409126"
     Site            order(14,18,68,70..71,74..75,77,87..95,113,115..116,
                     118..119,122..123,126)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409126"
     Region          243..>304
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          655..802
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          1075..1147
                     /region_name="PDZ"
                     /note="Domain present in PSD-95, Dlg, and ZO-1/2;
                     smart00228"
                     /db_xref="CDD:214570"
     Site            order(1076..1080,1093,1096,1125,1130,1133..1134)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467241"
     Region          <1253..>1546
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     Region          1675..1733
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cd08368"
                     /db_xref="CDD:259829"
     Site            order(1675,1678,1698,1701,1704,1707,1729,1732)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     CDS             1..1744
                     /gene="LMO7"
                     /coded_by="XM_054063782.1:113..5347"
                     /db_xref="GeneID:104054962"
ORIGIN      
        1 megredaecd cqaafdeaqr wvetvtgksf gtkdfraale ngvllcdlin kikpgvikki
       61 nrlstpiagl dninvflkac eniglkeaql fhpgdlqdls nrvtvkpeet nrrvknvlit
      121 lywlgrkaqs nphyngpyln lksfekllgq altkaleess hlnrsgrdsg ygdiwyvdrg
      181 epfssstshk rddsfdslds lgsrsstsfs sditlkggse gcdsdtdsel pfkmhdshkd
      241 drsyrrisvi epkpttdfnr flpsknkqta yvpaplrkkr teknednrrs waspvftesd
      301 gtfssnqrrq rqldtkeenk prlnipseis gyfdedeeee igipniekdd lyfrklssta
      361 antvpfdkfl pkfwtpeeel lwkkirkssf kpwykeiqgf srkksdseee efaykqssai
      421 vanqprpsfd wnscrrdqsy kptaeyvgss lsqiaegkil easdqpsqfs llqalqkysd
      481 ylssetktki dptsgprlik crknisfvpg ykqgdgengy lypdlenddl firktgafhv
      541 npvvlqdpry fkkiseqepf legeiilqpr egqqvipdle kddmifrkil sqkkevplsg
      601 apdtyhpalf pdpwslpeei rskflcllek nttpeerksn grvlspssrh kkddmltrki
      661 eswkvgsniq pvnfipgpcs eedwkkweai reaskvrhkk rqmverlfqk lsdeqgsksl
      721 ndvsaeelqs yrkiryeelq kikeqlqeqd lkwqedlakw knrrksftse lqkkkeeree
      781 ierrtsevsg rrtkslkemq eeredrdqds ygrqkhenrw tyslnddvfr eekapspqsa
      841 akdylleedt sysskdsksa yatqlhkenl pessatheap alpkslaeeq sstllstrys
      901 mnaqtgsaqv saslprsyqk tdtsrltsvv tprpfgvhsr gisslprsft mddaqkynge
      961 vektkrtqtl ftsssfsqpd sahplssgaf rsrgeeeeee kegvqstspp slalpvksqd
     1021 qdagssilkp eycsppdsls lassaehmsl pqpedskyle qysemrisin qrpghsrsfg
     1081 fttnwsssga fvqtveegsp aalsqlhvdd eiiainstkv scmdysqwee aisralktgn
     1141 lvmdirrygk ngtpenkwid atsgeqvsnv stvstkrdfs sslpssdtek klingmqgdl
     1201 nsneqrasep islknlkrrs qffeqggpep ampdlpvpsi sapsrrvwdq eeerkrqekw
     1261 qkeqdrllqe kykreqeklr eewlrakqea ekesskyfde eqtvltlnat svparvpsvs
     1321 swraspeadi peepegdggs evsphllgke eerrlqeerr iqeeaalrfe hdrelqelel
     1381 erqrkereqq ymeeqrrqae meeqrrqaem eeqrrqaeme eqrrqaerqr qesveipqyq
     1441 rhyeryevsk tiedradhpl idrhyeryev sktieeqpdq sfadrnksks tselnefnti
     1501 rngtqskyse rswnatdtqk ksqkehnlsa aelerqqilq emrkrtslht dsswirqrss
     1561 sihkepisly snsmrrgesl dnldssrtss wrhhswmnqs asssslsssq dfsrpvstsn
     1621 raymctpsss kastaatssr aptvsqaapr aqsplstsqt gsqtrsrsvs gkkicsycnn
     1681 vlgkgaamii eslglcyhlh cfkcvacgcd lggsrsgaev rirnnklfcn dcyirfktgq
     1741 ptsm
//
LOCUS       XP_053919764            1731 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM domain only protein 7 isoform X15 [Cuculus canorus].
ACCESSION   XP_053919764
VERSION     XP_053919764.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063789.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1731
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1731
                     /product="LIM domain only protein 7 isoform X15"
                     /calculated_mol_wt=198113
     Region          14..129
                     /region_name="CH_LMO7"
                     /note="calponin homology (CH) domain found in LIM domain
                     only protein 7; cd21277"
                     /db_xref="CDD:409126"
     Site            order(14,18,68,70..71,74..75,77,87..95,113,115..116,
                     118..119,122..123,126)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409126"
     Region          243..>304
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          655..802
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          1075..1147
                     /region_name="PDZ"
                     /note="Domain present in PSD-95, Dlg, and ZO-1/2;
                     smart00228"
                     /db_xref="CDD:214570"
     Site            order(1076..1080,1093,1096,1125,1130,1133..1134)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467241"
     Region          <1253..>1546
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     CDS             1..1731
                     /gene="LMO7"
                     /coded_by="XM_054063789.1:116..5311"
                     /db_xref="GeneID:104054962"
ORIGIN      
        1 megredaecd cqaafdeaqr wvetvtgksf gtkdfraale ngvllcdlin kikpgvikki
       61 nrlstpiagl dninvflkac eniglkeaql fhpgdlqdls nrvtvkpeet nrrvknvlit
      121 lywlgrkaqs nphyngpyln lksfekllgq altkaleess hlnrsgrdsg ygdiwyvdrg
      181 epfssstshk rddsfdslds lgsrsstsfs sditlkggse gcdsdtdsel pfkmhdshkd
      241 drsyrrisvi epkpttdfnr flpsknkqta yvpaplrkkr teknednrrs waspvftesd
      301 gtfssnqrrq rqldtkeenk prlnipseis gyfdedeeee igipniekdd lyfrklssta
      361 antvpfdkfl pkfwtpeeel lwkkirkssf kpwykeiqgf srkksdseee efaykqssai
      421 vanqprpsfd wnscrrdqsy kptaeyvgss lsqiaegkil easdqpsqfs llqalqkysd
      481 ylssetktki dptsgprlik crknisfvpg ykqgdgengy lypdlenddl firktgafhv
      541 npvvlqdpry fkkiseqepf legeiilqpr egqqvipdle kddmifrkil sqkkevplsg
      601 apdtyhpalf pdpwslpeei rskflcllek nttpeerksn grvlspssrh kkddmltrki
      661 eswkvgsniq pvnfipgpcs eedwkkweai reaskvrhkk rqmverlfqk lsdeqgsksl
      721 ndvsaeelqs yrkiryeelq kikeqlqeqd lkwqedlakw knrrksftse lqkkkeeree
      781 ierrtsevsg rrtkslkemq eeredrdqds ygrqkhenrw tyslnddvfr eekapspqsa
      841 akdylleedt sysskdsksa yatqlhkenl pessatheap alpkslaeeq sstllstrys
      901 mnaqtgsaqv saslprsyqk tdtsrltsvv tprpfgvhsr gisslprsft mddaqkynge
      961 vektkrtqtl ftsssfsqpd sahplssgaf rsrgeeeeee kegvqstspp slalpvksqd
     1021 qdagssilkp eycsppdsls lassaehmsl pqpedskyle qysemrisin qrpghsrsfg
     1081 fttnwsssga fvqtveegsp aalsqlhvdd eiiainstkv scmdysqwee aisralktgn
     1141 lvmdirrygk ngtpenkwid atsgeqvsnv stvstkrdfs sslpssdtek klingmqgdl
     1201 nsneqrasep islknlkrrs qffeqggpep ampdlpvpsi sapsrrvwdq eeerkrqekw
     1261 qkeqdrllqe kykreqeklr eewlrakqea ekesskyfde eqtvltlnat svparvpsvs
     1321 swraspeadi peepegdggs evsphllgke eerrlqeerr iqeeaalrfe hdrelqelel
     1381 erqrkereqq ymeeqrrqae meeqrrqaem eeqrrqaeme eqrrqaerqr qesveipqyq
     1441 rhyeryevsk tiedradhpl idrhyeryev sktieeqpdq sfadrnksks tselnefnti
     1501 rngtqskyse rswnatdtqk ksqkehnlsa aelerqqilq emrkrtslht dsswirqrss
     1561 sihkepisly snsmrrgesl dnldssrtss wrhhswmnqs asssslsssq dfsrpvstsn
     1621 raymctpsss kastaatssr aptvsqaapr aqsplstsqt gsqtrssvlp vdvtledpal
     1681 elklgsettn ssattaisdl kldnqppcea nedlkpllqi keeviaadvd l
//
LOCUS       XP_053919773            1582 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM domain only protein 7 isoform X16 [Cuculus canorus].
ACCESSION   XP_053919773
VERSION     XP_053919773.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063798.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1582
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1582
                     /product="LIM domain only protein 7 isoform X16"
                     /calculated_mol_wt=180701
     Region          14..129
                     /region_name="CH_LMO7"
                     /note="calponin homology (CH) domain found in LIM domain
                     only protein 7; cd21277"
                     /db_xref="CDD:409126"
     Site            order(14,18,68,70..71,74..75,77,87..95,113,115..116,
                     118..119,122..123,126)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409126"
     Region          243..>307
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          493..640
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          913..985
                     /region_name="PDZ"
                     /note="Domain present in PSD-95, Dlg, and ZO-1/2;
                     smart00228"
                     /db_xref="CDD:214570"
     Site            order(914..918,931,934,963,968,971..972)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467241"
     Region          <1091..>1384
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     Region          1513..1571
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cd08368"
                     /db_xref="CDD:259829"
     Site            order(1513,1516,1536,1539,1542,1545,1567,1570)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     CDS             1..1582
                     /gene="LMO7"
                     /coded_by="XM_054063798.1:109..4857"
                     /db_xref="GeneID:104054962"
ORIGIN      
        1 megredaecd cqaafdeaqr wvetvtgksf gtkdfraale ngvllcdlin kikpgvikki
       61 nrlstpiagl dninvflkac eniglkeaql fhpgdlqdls nrvtvkpeet nrrvknvlit
      121 lywlgrkaqs nphyngpyln lksfekllgq altkaleess hlnrsgrdsg ygdiwyvdrg
      181 epfssstshk rddsfdslds lgsrsstsfs sditlkggse gcdsdtdsel pfkmhdshkd
      241 drsyrrisvi epkpttdfnr flpsknkqta yvpaplrkkr teknednrrs waspvftesd
      301 gtfssqfsll qalqkysdyl ssetktkidp tsgprlikcr knisfvpgyk qgdgengyly
      361 pdlenddlfi rktgafhvnp vvlqdpryfk kiseqepfle geiilqpreg qqvipdlekd
      421 dmifrkilsq kkevplsgap dtyhpalfpd pwslpeeirs kflclleknt tpeerksngr
      481 vlspssrhkk ddmltrkies wkvgsniqpv nfipgpcsee dwkkweaire askvrhkkrq
      541 mverlfqkls deqgskslnd vsaeelqsyr kiryeelqki keqlqeqdlk wqedlakwkn
      601 rrksftselq kkkeereeie rrtsevsgrr tkslkemqee redrdqdsyg rqkhenrwty
      661 slnddvfree kapspqsaak dylleedtsy sskdsksaya tqlhkenlpe ssatheapal
      721 pkslaeeqss tllstrysmn aqtgsaqvsa slprsyqktd tsrltsvvtp rpfgvhsrgi
      781 sslprsftmd daqkyngeve ktkrtqtlft sssfsqpdsa hplssgafrs rgeeeeeeke
      841 gvqstsppsl alpvksqdqd agssilkpey csppdslsla ssaehmslpq pedskyleqy
      901 semrisinqr pghsrsfgft tnwsssgafv qtveegspaa lsqlhvddei iainstkvsc
      961 mdysqweeai sralktgnlv mdirrygkng tpenkwidat sgeqvsnvst vstkrdfsss
     1021 lpssdtekkl ingmqgdlns neqrasepis lknlkrrsqf feqggpepam pdlpvpsisa
     1081 psrrvwdqee erkrqekwqk eqdrllqeky kreqeklree wlrakqeaek esskyfdeeq
     1141 tvltlnatsv parvpsvssw raspeadipe epegdggsev sphllgkeee rrlqeerriq
     1201 eeaalrfehd relqeleler qrkereqqym eeqrrqaeme eqrrqaemee qrrqaemeeq
     1261 rrqaerqrqe sveipqyqrh yeryevskti edradhplid rhyeryevsk tieeqpdqsf
     1321 adrnksksts elnefntirn gtqskysers wnatdtqkks qkehnlsaae lerqqilqem
     1381 rkrtslhtds swirqrsssi hkepislysn smrrgesldn ldssrtsswr hhswmnqsas
     1441 ssslsssqdf srpvstsnra ymctpssska staatssrap tvsqaapraq splstsqtgs
     1501 qtrsrsvsgk kicsycnnvl gkgaamiies lglcyhlhcf kcvacgcdlg gsrsgaevri
     1561 rnnklfcndc yirfktgqpt sm
//
LOCUS       XP_053919780            1343 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM domain only protein 7 isoform X17 [Cuculus canorus].
ACCESSION   XP_053919780
VERSION     XP_053919780.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063805.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1343
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1343
                     /product="LIM domain only protein 7 isoform X17"
                     /calculated_mol_wt=153043
     Region          14..129
                     /region_name="CH_LMO7"
                     /note="calponin homology (CH) domain found in LIM domain
                     only protein 7; cd21277"
                     /db_xref="CDD:409126"
     Site            order(14,18,68,70..71,74..75,77,87..95,113,115..116,
                     118..119,122..123,126)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409126"
     Region          243..401
                     /region_name="DUF4757"
                     /note="Domain of unknown function (DUF4757); pfam15949"
                     /db_xref="CDD:464950"
     Region          674..746
                     /region_name="PDZ"
                     /note="Domain present in PSD-95, Dlg, and ZO-1/2;
                     smart00228"
                     /db_xref="CDD:214570"
     Site            order(675..679,692,695,724,729,732..733)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467241"
     Region          <852..>1145
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     Region          1274..1332
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cd08368"
                     /db_xref="CDD:259829"
     Site            order(1274,1277,1297,1300,1303,1306,1328,1331)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     CDS             1..1343
                     /gene="LMO7"
                     /coded_by="XM_054063805.1:101..4132"
                     /db_xref="GeneID:104054962"
ORIGIN      
        1 megredaecd cqaafdeaqr wvetvtgksf gtkdfraale ngvllcdlin kikpgvikki
       61 nrlstpiagl dninvflkac eniglkeaql fhpgdlqdls nrvtvkpeet nrrvknvlit
      121 lywlgrkaqs nphyngpyln lksfekllgq altkaleess hlnrsgrdsg ygdiwyvdrg
      181 epfssstshk rddsfdslds lgsrsstsfs sditlkggse gcdsdtdsel pfkmhdshkd
      241 drsyrrisvi epkpttdfnr flpsknkqta yvpaplrkkr teknednrrs waspvftesd
      301 gtfsrlfqkl sdeqgsksln dvsaeelqsy rkiryeelqk ikeqlqeqdl kwqedlakwk
      361 nrrksftsel qkkkeereei errtsevsgr rtkslkemqe eredrdqdsy grqkhenrwt
      421 yslnddvfre ekapspqsaa kdylleedts ysskdsksay atqlhkenlp essatheapa
      481 lpkslaeeqs stllstrysm naqtgsaqvs aslprsyqkt dtsrltsvvt prpfgvhsrg
      541 isslprsftm ddaqkyngev ektkrtqtlf tsssfsqpds ahplssgafr srgeeeeeek
      601 egvqstspps lalpvksqdq dagssilkpe ycsppdslsl assaehmslp qpedskyleq
      661 ysemrisinq rpghsrsfgf ttnwsssgaf vqtveegspa alsqlhvdde iiainstkvs
      721 cmdysqweea isralktgnl vmdirrygkn gtpenkwida tsgeqvsnvs tvstkrdfss
      781 slpssdtekk lingmqgdln sneqrasepi slknlkrrsq ffeqggpepa mpdlpvpsis
      841 apsrrvwdqe eerkrqekwq keqdrllqek ykreqeklre ewlrakqeae kesskyfdee
      901 qtvltlnats vparvpsvss wraspeadip eepegdggse vsphllgkee errlqeerri
      961 qeeaalrfeh drelqelele rqrkereqqy meeqrrqaem eeqrrqaeme eqrrqaemee
     1021 qrrqaerqrq esveipqyqr hyeryevskt iedradhpli drhyeryevs ktieeqpdqs
     1081 fadrnkskst selnefntir ngtqskyser swnatdtqkk sqkehnlsaa elerqqilqe
     1141 mrkrtslhtd sswirqrsss ihkepislys nsmrrgesld nldssrtssw rhhswmnqsa
     1201 sssslsssqd fsrpvstsnr aymctpsssk astaatssra ptvsqaapra qsplstsqtg
     1261 sqtrsrsvsg kkicsycnnv lgkgaamiie slglcyhlhc fkcvacgcdl ggsrsgaevr
     1321 irnnklfcnd cyirfktgqp tsm
//
LOCUS       XP_009567535             224 aa            linear   VRT 09-MAR-2023
DEFINITION  CD9 antigen [Cuculus canorus].
ACCESSION   XP_009567535
VERSION     XP_009567535.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009569240.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..224
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..224
                     /product="CD9 antigen"
                     /calculated_mol_wt=24638
     Region          10..215
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          109..189
                     /region_name="CD9_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), CD9 family. Tetraspanins are
                     trans-membrane proteins with 4 trans-membrane segments.
                     Both the N- and C-termini lie on the intracellular side of
                     the membrane. This alignment model spans...; cd03152"
                     /db_xref="CDD:239405"
     Site            order(110,115,119,121..122,125,138,141..142,145..146)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239405"
     CDS             1..224
                     /gene="CD9"
                     /coded_by="XM_009569240.2:96..770"
                     /db_xref="GeneID:104066614"
ORIGIN      
        1 mpvkggtkci kyllfgfnfi fwlagtavla iglwlrfdsq tkgvfelesn nntfytgvyi
       61 ligagalmml vgflgccgal qesqcmlglf fvflfvifal eiaaavwgft nrekvteelk
      121 dfyretyakr yqsgaretlk afqlaldccg ltgvleqqfm dtcpkksvme slsavscpaa
      181 ienvfnskln vigavglgia vimifgmifs mvlccairrn remv
//
LOCUS       XP_053919790             759 aa            linear   VRT 09-MAR-2023
DEFINITION  kell blood group glycoprotein isoform X1 [Cuculus canorus].
ACCESSION   XP_053919790
VERSION     XP_053919790.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063815.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..759
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..759
                     /product="kell blood group glycoprotein isoform X1"
                     /calculated_mol_wt=87228
     Region          75..661
                     /region_name="M13"
                     /note="Peptidase family M13 includes neprilysin and
                     endothelin-converting enzyme I; cd08662"
                     /db_xref="CDD:341056"
     CDS             1..759
                     /gene="KEL"
                     /coded_by="XM_054063815.1:346..2625"
                     /db_xref="GeneID:104064345"
ORIGIN      
        1 mrtpaetcdq elrtgakkeq clqekslllc mllstllglt llityivmtc slgscdvkld
       61 ltllarllns rndtvdpced fykyacgrwe sqhssrttee slnvfdvlle enrlilkrll
      121 egphfgirss akekaiqfyh scmdtqqies qgtqplkdll nqvggwnitg vgkakdfnet
      181 lqtlmgryst fpffrvhvgp spfdrktnii qidhpefdmp lerelkekny levlrvylsy
      241 lnklggllgg lqdglpdyfs ltlsfisnlq qvvtpikerq qrrmlffrtt irelqekapa
      301 idwlsclqav fhpmsmnlsq pivvhdmdyl rgmsqlikkw hkervlhiym iiclignlsp
      361 aldsrfqdar vevskirygk mgsrmilaer wrkcltdtst ffepvlgqmf vqeifplqtk
      421 klaeqmffei rdalygeldq lewmdeqtrq eakalvskvq veigypahil qtdkvnleyq
      481 nleineetff lnvvaclkvl rensylkplq hrsqdnwhvs pwtvhsyysi rhhmvvfpag
      541 mfrspffhmd fpsamnfgai gvfmahellh afyayvlpgg cptcnrstlq ksidclvkhy
      601 esydlkvngt ftllentadt ggltiayqay knwlkkhkea kvlpetelsl dqlfylsfah
      661 vmhsrvvmca fslstvfhvv tvclssslfl lltklgitdi pgssrilfrk lihkyktpnl
      721 lqiskltkgl sanisfiklr nlpklscsrq avreniasl
//
LOCUS       XP_053919797             729 aa            linear   VRT 09-MAR-2023
DEFINITION  kell blood group glycoprotein isoform X2 [Cuculus canorus].
ACCESSION   XP_053919797
VERSION     XP_053919797.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063822.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..729
                     /product="kell blood group glycoprotein isoform X2"
                     /calculated_mol_wt=83822
     Region          45..631
                     /region_name="M13"
                     /note="Peptidase family M13 includes neprilysin and
                     endothelin-converting enzyme I; cd08662"
                     /db_xref="CDD:341056"
     CDS             1..729
                     /gene="KEL"
                     /coded_by="XM_054063822.1:1206..3395"
                     /db_xref="GeneID:104064345"
ORIGIN      
        1 mllstllglt llityivmtc slgscdvkld ltllarllns rndtvdpced fykyacgrwe
       61 sqhssrttee slnvfdvlle enrlilkrll egphfgirss akekaiqfyh scmdtqqies
      121 qgtqplkdll nqvggwnitg vgkakdfnet lqtlmgryst fpffrvhvgp spfdrktnii
      181 qidhpefdmp lerelkekny levlrvylsy lnklggllgg lqdglpdyfs ltlsfisnlq
      241 qvvtpikerq qrrmlffrtt irelqekapa idwlsclqav fhpmsmnlsq pivvhdmdyl
      301 rgmsqlikkw hkervlhiym iiclignlsp aldsrfqdar vevskirygk mgsrmilaer
      361 wrkcltdtst ffepvlgqmf vqeifplqtk klaeqmffei rdalygeldq lewmdeqtrq
      421 eakalvskvq veigypahil qtdkvnleyq nleineetff lnvvaclkvl rensylkplq
      481 hrsqdnwhvs pwtvhsyysi rhhmvvfpag mfrspffhmd fpsamnfgai gvfmahellh
      541 afyayvlpgg cptcnrstlq ksidclvkhy esydlkvngt ftllentadt ggltiayqay
      601 knwlkkhkea kvlpetelsl dqlfylsfah vmhsrvvmca fslstvfhvv tvclssslfl
      661 lltklgitdi pgssrilfrk lihkyktpnl lqiskltkgl sanisfiklr nlpklscsrq
      721 avreniasl
//
LOCUS       XP_053919806             721 aa            linear   VRT 09-MAR-2023
DEFINITION  kell blood group glycoprotein isoform X3 [Cuculus canorus].
ACCESSION   XP_053919806
VERSION     XP_053919806.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063831.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..721
                     /product="kell blood group glycoprotein isoform X3"
                     /calculated_mol_wt=83057
     Region          75..623
                     /region_name="M13"
                     /note="Peptidase family M13 includes neprilysin and
                     endothelin-converting enzyme I; cd08662"
                     /db_xref="CDD:341056"
     CDS             1..721
                     /gene="KEL"
                     /coded_by="XM_054063831.1:347..2512"
                     /db_xref="GeneID:104064345"
ORIGIN      
        1 mrtpaetcdq elrtgakkeq clqekslllc mllstllglt llityivmtc slgscdvkld
       61 ltllarllns rndtvdpced fykyacgrwe sqhssrttee slnvfdvlle enrlilkrll
      121 egphfgirss akekaiqfyh scmdtqqies qgtqplkdll nqvggwnitg vgkakdfnet
      181 lqtlmgryst fpffrvhvgp spfdrktnii qidhpefdmp lerelkekny leqvvtpike
      241 rqqrrmlffr ttirelqeka paidwlsclq avfhpmsmnl sqpivvhdmd ylrgmsqlik
      301 kwhkervlhi ymiiclignl spaldsrfqd arvevskiry gkmgsrmila erwrkcltdt
      361 stffepvlgq mfvqeifplq tkklaeqmff eirdalygel dqlewmdeqt rqeakalvsk
      421 vqveigypah ilqtdkvnle yqnleineet fflnvvaclk vlrensylkp lqhrsqdnwh
      481 vspwtvhsyy sirhhmvvfp agmfrspffh mdfpsamnfg aigvfmahel lhafyayvlp
      541 ggcptcnrst lqksidclvk hyesydlkvn gtftllenta dtggltiayq ayknwlkkhk
      601 eakvlpetel sldqlfylsf ahvmhsrvvm cafslstvfh vvtvclsssl fllltklgit
      661 dipgssrilf rklihkyktp nllqiskltk glsanisfik lrnlpklscs rqavrenias
      721 l
//
LOCUS       XP_053919811             718 aa            linear   VRT 09-MAR-2023
DEFINITION  kell blood group glycoprotein isoform X4 [Cuculus canorus].
ACCESSION   XP_053919811
VERSION     XP_053919811.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063836.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..718
                     /product="kell blood group glycoprotein isoform X4"
                     /calculated_mol_wt=82598
     Region          75..716
                     /region_name="M13"
                     /note="Peptidase family M13 includes neprilysin and
                     endothelin-converting enzyme I; cd08662"
                     /db_xref="CDD:341056"
     Site            order(105,519,524..527,546,562..563,566..567,570,615,658,
                     661..662,679..680,686)
                     /site_type="active"
                     /db_xref="CDD:341056"
     CDS             1..718
                     /gene="KEL"
                     /coded_by="XM_054063836.1:331..2487"
                     /db_xref="GeneID:104064345"
ORIGIN      
        1 mrtpaetcdq elrtgakkeq clqekslllc mllstllglt llityivmtc slgscdvkld
       61 ltllarllns rndtvdpced fykyacgrwe sqhssrttee slnvfdvlle enrlilkrll
      121 egphfgirss akekaiqfyh scmdtqqies qgtqplkdll nqvggwnitg vgkakdfnet
      181 lqtlmgryst fpffrvhvgp spfdrktnii qidhpefdmp lerelkekny levlrvylsy
      241 lnklggllgg lqdglpdyfs ltlsfisnlq qvvtpikerq qrrmlffrtt irelqekapa
      301 idwlsclqav fhpmsmnlsq pivvhdmdyl rgmsqlikkw hkervlhiym iiclignlsp
      361 aldsrfqdar vevskirygk mgsrmilaer wrkcltdtst ffepvlgqmf vqeifplqtk
      421 klaeqmffei rdalygeldq lewmdeqtrq eakalvskvq veigypahil qtdkvnleyq
      481 nleineetff lnvvaclkvl rensylkplq hrsqdnwhvs pwtvhsyysi rhhmvvfpag
      541 mfrspffhmd fpsamnfgai gvfmahellh afyayvlpgg cptcnrstlq ksidclvkhy
      601 esydlkvngt ftllentadt ggltiayqay knwlkkhkea kvlpetelsl dqlfylsfah
      661 tmcghqdpek lqsslntdph splplrvcgs vsnsqdfakh fhcssgsamn pdnkcrvw
//
LOCUS       XP_053919818             617 aa            linear   VRT 09-MAR-2023
DEFINITION  kell blood group glycoprotein isoform X5 [Cuculus canorus].
ACCESSION   XP_053919818
VERSION     XP_053919818.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063843.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..617
                     /product="kell blood group glycoprotein isoform X5"
                     /calculated_mol_wt=71066
     Region          1..519
                     /region_name="M13"
                     /note="Peptidase family M13 includes neprilysin and
                     endothelin-converting enzyme I; cd08662"
                     /db_xref="CDD:341056"
     CDS             1..617
                     /gene="KEL"
                     /coded_by="XM_054063843.1:244..2097"
                     /db_xref="GeneID:104064345"
ORIGIN      
        1 mdtqqiesqg tqplkdllnq vggwnitgvg kakdfnetlq tlmgrystfp ffrvhvgpsp
       61 fdrktniiqi dhpefdmple relkeknyle vlrvylsyln klggllgglq dglpdyfslt
      121 lsfisnlqqv vtpikerqqr rmlffrttir elqekapaid wlsclqavfh pmsmnlsqpi
      181 vvhdmdylrg msqlikkwhk ervlhiymii clignlspal dsrfqdarve vskirygkmg
      241 srmilaerwr kcltdtstff epvlgqmfvq eifplqtkkl aeqmffeird alygeldqle
      301 wmdeqtrqea kalvskvqve igypahilqt dkvnleyqnl eineetffln vvaclkvlre
      361 nsylkplqhr sqdnwhvspw tvhsyysirh hmvvfpagmf rspffhmdfp samnfgaigv
      421 fmahellhaf yayvlpggcp tcnrstlqks idclvkhyes ydlkvngtft llentadtgg
      481 ltiayqaykn wlkkhkeakv lpetelsldq lfylsfahvm hsrvvmcafs lstvfhvvtv
      541 clssslflll tklgitdipg ssrilfrkli hkyktpnllq iskltkglsa nisfiklrnl
      601 pklscsrqav reniasl
//
LOCUS       XP_009564965             724 aa            linear   VRT 09-MAR-2023
DEFINITION  transient receptor potential cation channel subfamily V member 6
            isoform X1 [Cuculus canorus].
ACCESSION   XP_009564965
VERSION     XP_009564965.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566670.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..724
                     /product="transient receptor potential cation channel
                     subfamily V member 6 isoform X1"
                     /calculated_mol_wt=82784
     Region          30..638
                     /region_name="TRPV5-6"
                     /note="Transient Receptor Potential channel, Vanilloid
                     subfamily (TRPV), types 5 and 6; cd22192"
                     /db_xref="CDD:411976"
     Site            order(34..36,38..40,42..43,89..90,119,124,127..128,154,
                     161..162,164,209..210,269..275,325,346,349..350,352,354,
                     454,457..458,460..461,464,467..468,476..477,480,483..484,
                     487..488,492,494..495,497..498,501,504..506,508..509,
                     511..513,515..518,530,533..534,536..537,540..544)
                     /site_type="other"
                     /note="tetramer interface [polypeptide binding]"
                     /db_xref="CDD:411976"
     Region          47..77
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          80..111
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(81,85..86,89..91,93..94,98,101,111,117,119,123..124,
                     127..129,131..132,136,139,149,164,166,170..171,174..176,
                     178..179,183,186,195)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          117..149
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          164..195
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(211..213,256,268,271,585..586,589)
                     /site_type="other"
                     /note="calmodulin binding site [polypeptide binding]"
                     /db_xref="CDD:411976"
     Region          636..720
                     /region_name="CBD_TRPV5_C"
                     /note="C-terminal CaM binding domain found in transient
                     receptor potential cation channel subfamily V member 5
                     (TRPV5) and similar proteins; cd22296"
                     /db_xref="CDD:412091"
     Site            order(669,679,681,683..688,691..705,713)
                     /site_type="other"
                     /note="calmodulin binding site [polypeptide binding]"
                     /db_xref="CDD:412091"
     CDS             1..724
                     /gene="LOC104064344"
                     /coded_by="XM_009566670.2:474..2648"
                     /db_xref="GeneID:104064344"
ORIGIN      
        1 mgvplfgdnk pfyfriwsgl sqklqgkksw nkhldeiyll qqkriwespl lqaakennlp
       61 airklltdgt cdiyqrgavg etalhvaaly dnveaavtlm eaapelvner mtselyegqt
      121 alhiaaanqn itlvkallkr gadartaqat ghffrrssqn llyfgehvls faacvgneei
      181 vqllieygad iraqdylgnt vlhilvlqpn ktfachmysl ilsydrnkeg sgslelipnn
      241 egltpfklag vegntvmfqy lmqkrkhilw sfgplttvly dlteidswae dqsflelivs
      301 tkkrearqil dltpvkelvs lkwnmygrpy fcflaifyil ymvcftmccv yrplkprtsn
      361 ktssrdntiy vqkmlqesya tyedelrlvg elitvigavv ilvleipdil rvgaakyfgq
      421 tilggpfhvi vityacmilv tmvmrltstt gevvpmsfal vlgwcnvmyf argfqmlgpf
      481 timiqkmifg dlmrfcwlma vvilgfasaf yiifqtenpe nlgqfynypm slfttfelfl
      541 tiidgpanyd vdlpfmysvv yfafaiiatl lmlnlliamm gdthwrvahe rdelwraqvv
      601 attvmlerkl prclwprsgi cgleyglgdr wylrvedrvd pnkhkmmryt eafkaqdrdn
      661 ydkglenlei ngnilykkel salslsrsts rtsshrgwei lrrntfhqlc gevnhsmeee
      721 vydv
//
LOCUS       XP_053919839             755 aa            linear   VRT 09-MAR-2023
DEFINITION  transient receptor potential cation channel subfamily V member 5
            isoform X2 [Cuculus canorus].
ACCESSION   XP_053919839
VERSION     XP_053919839.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063864.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..755
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..755
                     /product="transient receptor potential cation channel
                     subfamily V member 5 isoform X2"
                     /calculated_mol_wt=86383
     Region          30..638
                     /region_name="TRPV5-6"
                     /note="Transient Receptor Potential channel, Vanilloid
                     subfamily (TRPV), types 5 and 6; cd22192"
                     /db_xref="CDD:411976"
     Site            order(34..36,38..40,42..43,89..90,119,124,127..128,154,
                     161..162,164,209..210,269..275,325,346,349..350,352,354,
                     454,457..458,460..461,464,467..468,476..477,480,483..484,
                     487..488,492,494..495,497..498,501,504..506,508..509,
                     511..513,515..518,530,533..534,536..537,540..544)
                     /site_type="other"
                     /note="tetramer interface [polypeptide binding]"
                     /db_xref="CDD:411976"
     Region          47..77
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          80..111
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(81,85..86,89..91,93..94,98,101,111,117,119,123..124,
                     127..129,131..132,136,139,149,164,166,170..171,174..176,
                     178..179,183,186,195)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          117..149
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          164..195
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(211..213,256,268,271,585..586,589)
                     /site_type="other"
                     /note="calmodulin binding site [polypeptide binding]"
                     /db_xref="CDD:411976"
     Region          636..713
                     /region_name="CBD_TRPV5_C"
                     /note="C-terminal CaM binding domain found in transient
                     receptor potential cation channel subfamily V member 5
                     (TRPV5) and similar proteins; cd22296"
                     /db_xref="CDD:412091"
     Site            order(669,679,681,683..688,691..705,713)
                     /site_type="other"
                     /note="calmodulin binding site [polypeptide binding]"
                     /db_xref="CDD:412091"
     CDS             1..755
                     /gene="LOC104064344"
                     /coded_by="XM_054063864.1:474..2741"
                     /db_xref="GeneID:104064344"
ORIGIN      
        1 mgvplfgdnk pfyfriwsgl sqklqgkksw nkhldeiyll qqkriwespl lqaakennlp
       61 airklltdgt cdiyqrgavg etalhvaaly dnveaavtlm eaapelvner mtselyegqt
      121 alhiaaanqn itlvkallkr gadartaqat ghffrrssqn llyfgehvls faacvgneei
      181 vqllieygad iraqdylgnt vlhilvlqpn ktfachmysl ilsydrnkeg sgslelipnn
      241 egltpfklag vegntvmfqy lmqkrkhilw sfgplttvly dlteidswae dqsflelivs
      301 tkkrearqil dltpvkelvs lkwnmygrpy fcflaifyil ymvcftmccv yrplkprtsn
      361 ktssrdntiy vqkmlqesya tyedelrlvg elitvigavv ilvleipdil rvgaakyfgq
      421 tilggpfhvi vityacmilv tmvmrltstt gevvpmsfal vlgwcnvmyf argfqmlgpf
      481 timiqkmifg dlmrfcwlma vvilgfasaf yiifqtenpe nlgqfynypm slfttfelfl
      541 tiidgpanyd vdlpfmysvv yfafaiiatl lmlnlliamm gdthwrvahe rdelwraqvv
      601 attvmlerkl prclwprsgi cgleyglgdr wylrvedrvd pnkhkmmryt eafkaqdrdn
      661 ydkglenlei ngnilykkel salslsrsts rtsshrgwei lrrntfhqlc geieiqnypv
      721 yrflycttvv vrvfflmsvq githkkesvp vtpfv
//
LOCUS       XP_053919852             683 aa            linear   VRT 09-MAR-2023
DEFINITION  SH3 domain-containing kinase-binding protein 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053919852
VERSION     XP_053919852.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063877.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..683
                     /product="SH3 domain-containing kinase-binding protein 1
                     isoform X1"
                     /calculated_mol_wt=76134
     Region          3..55
                     /region_name="SH3_CIN85_1"
                     /note="First Src Homology 3 domain (SH3A) of
                     Cbl-interacting protein of 85 kDa; cd12052"
                     /db_xref="CDD:212985"
     Site            order(7..13,17,21..22,34..36,46..47,49,51..52)
                     /site_type="other"
                     /note="putative ubiquitin interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:212985"
     Site            order(8,10,13..14,16..17,34,36,47,51..52,54)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212985"
     Region          103..155
                     /region_name="SH3_CIN85_2"
                     /note="Second Src Homology 3 domain (SH3B) of
                     Cbl-interacting protein of 85 kDa; cd12055"
                     /db_xref="CDD:212988"
     Site            order(107..113,117,121..122,134..136,146..147,149,
                     151..152)
                     /site_type="other"
                     /note="putative ubiquitin interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:212988"
     Site            order(108,110,113,117,134..136,147,149,151..152)
                     /site_type="other"
                     /note="putative peptide ligand binding site [polypeptide
                     binding]"
                     /db_xref="CDD:212988"
     Region          292..347
                     /region_name="SH3_CIN85_3"
                     /note="Third Src Homology 3 domain (SH3C) of
                     Cbl-interacting protein of 85 kDa; cd12057"
                     /db_xref="CDD:212990"
     Site            order(296..303,305..306,310..311,324..327,337..338,340,
                     342..343,345)
                     /site_type="other"
                     /note="ubiquitin interaction site [polypeptide binding]"
                     /db_xref="CDD:212990"
     Site            order(297,299,302,306,325..327,338,340,342..343)
                     /site_type="other"
                     /note="putative peptide ligand binding site [polypeptide
                     binding]"
                     /db_xref="CDD:212990"
     CDS             1..683
                     /gene="SH3KBP1"
                     /coded_by="XM_054063877.1:558..2609"
                     /db_xref="GeneID:104063385"
ORIGIN      
        1 mveaivefdy kaqhddelti tvgdiitnik kddggwwegq lkgrrglfpd nfvreikkdm
       61 kkenaankpp ekpinevsng sslqlseaii rtnkkgernr rrrcqvafsy mpqnedelel
      121 kvgdiievvg eveegwwegi lngktgmfps nfikelsdsd dvgiaqeeqv ksrksafegt
      181 ilyrvapaki dsyrrynslk datgsesdgg dscstksega nggttiqpkk vkgvgfgdif
      241 kdkpiklrpr sievendflp vdknigkklp patatqeptk ievdgktktk eyckvifpye
      301 aqnddeltir egdvvtlisk dcidvgwweg elngrrgvfp dnfvkllpsd fekerpkkpp
      361 ppsapvikqg ttdrkheikk vpperpeclp nrteekerse reqkqldlqk psvpaippkk
      421 prppkansvn rpgtlpprrp erpvvpatht rsdspkvelv gstvsgtlek dssersndid
      481 legfdsvipi aeklnhpttt rpkatgrrpp sqsltsssls spdffdspsp eeereehvsi
      541 thkniemsrk srtvtisqvs dnktslppkp gglasgsnvq pslspslspg fhsiamgttg
      601 hrsnspslfv tegkpktehl sqgqtaleel rtqikelrti ietmkdqqkk eikqllseld
      661 eekkirlrlq mevndikkal qsk
//
LOCUS       XP_053919860             658 aa            linear   VRT 09-MAR-2023
DEFINITION  SH3 domain-containing kinase-binding protein 1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053919860
VERSION     XP_053919860.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063885.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..658
                     /product="SH3 domain-containing kinase-binding protein 1
                     isoform X2"
                     /calculated_mol_wt=73177
     Region          3..55
                     /region_name="SH3_CIN85_1"
                     /note="First Src Homology 3 domain (SH3A) of
                     Cbl-interacting protein of 85 kDa; cd12052"
                     /db_xref="CDD:212985"
     Site            order(7..13,17,21..22,34..36,46..47,49,51..52)
                     /site_type="other"
                     /note="putative ubiquitin interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:212985"
     Site            order(8,10,13..14,16..17,34,36,47,51..52,54)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212985"
     Region          103..155
                     /region_name="SH3_CIN85_2"
                     /note="Second Src Homology 3 domain (SH3B) of
                     Cbl-interacting protein of 85 kDa; cd12055"
                     /db_xref="CDD:212988"
     Site            order(107..113,117,121..122,134..136,146..147,149,
                     151..152)
                     /site_type="other"
                     /note="putative ubiquitin interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:212988"
     Site            order(108,110,113,117,134..136,147,149,151..152)
                     /site_type="other"
                     /note="putative peptide ligand binding site [polypeptide
                     binding]"
                     /db_xref="CDD:212988"
     Region          267..322
                     /region_name="SH3_CIN85_3"
                     /note="Third Src Homology 3 domain (SH3C) of
                     Cbl-interacting protein of 85 kDa; cd12057"
                     /db_xref="CDD:212990"
     Site            order(271..278,280..281,285..286,299..302,312..313,315,
                     317..318,320)
                     /site_type="other"
                     /note="ubiquitin interaction site [polypeptide binding]"
                     /db_xref="CDD:212990"
     Site            order(272,274,277,281,300..302,313,315,317..318)
                     /site_type="other"
                     /note="putative peptide ligand binding site [polypeptide
                     binding]"
                     /db_xref="CDD:212990"
     CDS             1..658
                     /gene="SH3KBP1"
                     /coded_by="XM_054063885.1:547..2523"
                     /db_xref="GeneID:104063385"
ORIGIN      
        1 mveaivefdy kaqhddelti tvgdiitnik kddggwwegq lkgrrglfpd nfvreikkdm
       61 kkenaankpp ekpinevsng sslqlseaii rtnkkgernr rrrcqvafsy mpqnedelel
      121 kvgdiievvg eveegwwegi lngktgmfps nfikelsdsd dvgiaqeeqv ksslkdatgs
      181 esdggdscst kseganggtt iqpkkvkgvg fgdifkdkpi klrprsieve ndflpvdkni
      241 gkklppatat qeptkievdg ktktkeyckv ifpyeaqndd eltiregdvv tliskdcidv
      301 gwwegelngr rgvfpdnfvk llpsdfeker pkkppppsap vikqgttdrk heikkvpper
      361 peclpnrtee kersereqkq ldlqkpsvpa ippkkprppk ansvnrpgtl pprrperpvv
      421 pathtrsdsp kvelvgstvs gtlekdsser sndidlegfd svipiaekln hptttrpkat
      481 grrppsqslt ssslsspdff dspspeeere ehvsithkni emsrksrtvt isqvsdnkts
      541 lppkpgglas gsnvqpslsp slspgfhsia mgttghrsns pslfvtegkp ktehlsqgqt
      601 aleelrtqik elrtiietmk dqqkkeikql lseldeekki rlrlqmevnd ikkalqsk
//
LOCUS       XP_053919868             643 aa            linear   VRT 09-MAR-2023
DEFINITION  SH3 domain-containing kinase-binding protein 1 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053919868
VERSION     XP_053919868.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063893.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..643
                     /product="SH3 domain-containing kinase-binding protein 1
                     isoform X3"
                     /calculated_mol_wt=71366
     Region          63..115
                     /region_name="SH3_CIN85_2"
                     /note="Second Src Homology 3 domain (SH3B) of
                     Cbl-interacting protein of 85 kDa; cd12055"
                     /db_xref="CDD:212988"
     Site            order(67..73,77,81..82,94..96,106..107,109,111..112)
                     /site_type="other"
                     /note="putative ubiquitin interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:212988"
     Site            order(68,70,73,77,94..96,107,109,111..112)
                     /site_type="other"
                     /note="putative peptide ligand binding site [polypeptide
                     binding]"
                     /db_xref="CDD:212988"
     Region          252..307
                     /region_name="SH3_CIN85_3"
                     /note="Third Src Homology 3 domain (SH3C) of
                     Cbl-interacting protein of 85 kDa; cd12057"
                     /db_xref="CDD:212990"
     Site            order(256..263,265..266,270..271,284..287,297..298,300,
                     302..303,305)
                     /site_type="other"
                     /note="ubiquitin interaction site [polypeptide binding]"
                     /db_xref="CDD:212990"
     Site            order(257,259,262,266,285..287,298,300,302..303)
                     /site_type="other"
                     /note="putative peptide ligand binding site [polypeptide
                     binding]"
                     /db_xref="CDD:212990"
     CDS             1..643
                     /gene="SH3KBP1"
                     /coded_by="XM_054063893.1:653..2584"
                     /db_xref="GeneID:104063385"
ORIGIN      
        1 mmeaggkdss kaeeeikkdm kkenaankpp ekpinevsng sslqlseaii rtnkkgernr
       61 rrrcqvafsy mpqnedelel kvgdiievvg eveegwwegi lngktgmfps nfikelsdsd
      121 dvgiaqeeqv ksrksafegt ilyrvapaki dsyrrynslk datgsesdgg dscstksega
      181 nggttiqpkk vkgvgfgdif kdkpiklrpr sievendflp vdknigkklp patatqeptk
      241 ievdgktktk eyckvifpye aqnddeltir egdvvtlisk dcidvgwweg elngrrgvfp
      301 dnfvkllpsd fekerpkkpp ppsapvikqg ttdrkheikk vpperpeclp nrteekerse
      361 reqkqldlqk psvpaippkk prppkansvn rpgtlpprrp erpvvpatht rsdspkvelv
      421 gstvsgtlek dssersndid legfdsvipi aeklnhpttt rpkatgrrpp sqsltsssls
      481 spdffdspsp eeereehvsi thkniemsrk srtvtisqvs dnktslppkp gglasgsnvq
      541 pslspslspg fhsiamgttg hrsnspslfv tegkpktehl sqgqtaleel rtqikelrti
      601 ietmkdqqkk eikqllseld eekkirlrlq mevndikkal qsk
//
LOCUS       XP_053919874             641 aa            linear   VRT 09-MAR-2023
DEFINITION  SH3 domain-containing kinase-binding protein 1 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053919874
VERSION     XP_053919874.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063899.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..641
                     /product="SH3 domain-containing kinase-binding protein 1
                     isoform X4"
                     /calculated_mol_wt=71346
     Region          3..55
                     /region_name="SH3_CIN85_1"
                     /note="First Src Homology 3 domain (SH3A) of
                     Cbl-interacting protein of 85 kDa; cd12052"
                     /db_xref="CDD:212985"
     Site            order(7..13,17,21..22,34..36,46..47,49,51..52)
                     /site_type="other"
                     /note="putative ubiquitin interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:212985"
     Site            order(8,10,13..14,16..17,34,36,47,51..52,54)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212985"
     Region          103..155
                     /region_name="SH3_CIN85_2"
                     /note="Second Src Homology 3 domain (SH3B) of
                     Cbl-interacting protein of 85 kDa; cd12055"
                     /db_xref="CDD:212988"
     Site            order(107..113,117,121..122,134..136,146..147,149,
                     151..152)
                     /site_type="other"
                     /note="putative ubiquitin interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:212988"
     Site            order(108,110,113,117,134..136,147,149,151..152)
                     /site_type="other"
                     /note="putative peptide ligand binding site [polypeptide
                     binding]"
                     /db_xref="CDD:212988"
     Region          292..347
                     /region_name="SH3_CIN85_3"
                     /note="Third Src Homology 3 domain (SH3C) of
                     Cbl-interacting protein of 85 kDa; cd12057"
                     /db_xref="CDD:212990"
     Site            order(296..303,305..306,310..311,324..327,337..338,340,
                     342..343,345)
                     /site_type="other"
                     /note="ubiquitin interaction site [polypeptide binding]"
                     /db_xref="CDD:212990"
     Site            order(297,299,302,306,325..327,338,340,342..343)
                     /site_type="other"
                     /note="putative peptide ligand binding site [polypeptide
                     binding]"
                     /db_xref="CDD:212990"
     CDS             1..641
                     /gene="SH3KBP1"
                     /coded_by="XM_054063899.1:568..2493"
                     /db_xref="GeneID:104063385"
ORIGIN      
        1 mveaivefdy kaqhddelti tvgdiitnik kddggwwegq lkgrrglfpd nfvreikkdm
       61 kkenaankpp ekpinevsng sslqlseaii rtnkkgernr rrrcqvafsy mpqnedelel
      121 kvgdiievvg eveegwwegi lngktgmfps nfikelsdsd dvgiaqeeqv ksrksafegt
      181 ilyrvapaki dsyrrynslk datgsesdgg dscstksega nggttiqpkk vkgvgfgdif
      241 kdkpiklrpr sievendflp vdknigkklp patatqeptk ievdgktktk eyckvifpye
      301 aqnddeltir egdvvtlisk dcidvgwweg elngrrgvfp dnfvkllpsd fekerpkkpp
      361 ppsapvikqg ttdrkheikk vpperpeclp nrteekerse reqkqldlqk psvpaippkk
      421 prppkansvn rpgtlpprrp erpvvpatht rsdspkvelv gstvsgtlek dssersndid
      481 legfdsvipi aeklnhpttt rpkatgrrpp sqsltsvsdn ktslppkpgg lasgsnvqps
      541 lspslspgfh siamgttghr snspslfvte gkpktehlsq gqtaleelrt qikelrtiie
      601 tmkdqqkkei kqllseldee kkirlrlqme vndikkalqs k
//
LOCUS       XP_053919880             636 aa            linear   VRT 09-MAR-2023
DEFINITION  SH3 domain-containing kinase-binding protein 1 isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053919880
VERSION     XP_053919880.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063905.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..636
                     /product="SH3 domain-containing kinase-binding protein 1
                     isoform X5"
                     /calculated_mol_wt=70688
     Region          56..108
                     /region_name="SH3_CIN85_2"
                     /note="Second Src Homology 3 domain (SH3B) of
                     Cbl-interacting protein of 85 kDa; cd12055"
                     /db_xref="CDD:212988"
     Site            order(60..66,70,74..75,87..89,99..100,102,104..105)
                     /site_type="other"
                     /note="putative ubiquitin interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:212988"
     Site            order(61,63,66,70,87..89,100,102,104..105)
                     /site_type="other"
                     /note="putative peptide ligand binding site [polypeptide
                     binding]"
                     /db_xref="CDD:212988"
     Region          245..300
                     /region_name="SH3_CIN85_3"
                     /note="Third Src Homology 3 domain (SH3C) of
                     Cbl-interacting protein of 85 kDa; cd12057"
                     /db_xref="CDD:212990"
     Site            order(249..256,258..259,263..264,277..280,290..291,293,
                     295..296,298)
                     /site_type="other"
                     /note="ubiquitin interaction site [polypeptide binding]"
                     /db_xref="CDD:212990"
     Site            order(250,252,255,259,278..280,291,293,295..296)
                     /site_type="other"
                     /note="putative peptide ligand binding site [polypeptide
                     binding]"
                     /db_xref="CDD:212990"
     CDS             1..636
                     /gene="SH3KBP1"
                     /coded_by="XM_054063905.1:128..2038"
                     /db_xref="GeneID:104063385"
ORIGIN      
        1 mqgvtekeik kdmkkenaan kppekpinev sngsslqlse aiirtnkkge rnrrrrcqva
       61 fsympqnede lelkvgdiie vvgeveegww egilngktgm fpsnfikels dsddvgiaqe
      121 eqvksrksaf egtilyrvap akidsyrryn slkdatgses dggdscstks eganggttiq
      181 pkkvkgvgfg difkdkpikl rprsievend flpvdknigk klppatatqe ptkievdgkt
      241 ktkeyckvif pyeaqnddel tiregdvvtl iskdcidvgw wegelngrrg vfpdnfvkll
      301 psdfekerpk kppppsapvi kqgttdrkhe ikkvpperpe clpnrteeke rsereqkqld
      361 lqkpsvpaip pkkprppkan svnrpgtlpp rrperpvvpa thtrsdspkv elvgstvsgt
      421 lekdssersn didlegfdsv ipiaeklnhp tttrpkatgr rppsqsltss slsspdffds
      481 pspeeereeh vsithkniem srksrtvtis qvsdnktslp pkpgglasgs nvqpslspsl
      541 spgfhsiamg ttghrsnsps lfvtegkpkt ehlsqgqtal eelrtqikel rtiietmkdq
      601 qkkeikqlls eldeekkirl rlqmevndik kalqsk
//
LOCUS       XP_053919891             632 aa            linear   VRT 09-MAR-2023
DEFINITION  SH3 domain-containing kinase-binding protein 1 isoform X6 [Cuculus
            canorus].
ACCESSION   XP_053919891
VERSION     XP_053919891.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063916.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..632
                     /product="SH3 domain-containing kinase-binding protein 1
                     isoform X6"
                     /calculated_mol_wt=70258
     Region          52..104
                     /region_name="SH3_CIN85_2"
                     /note="Second Src Homology 3 domain (SH3B) of
                     Cbl-interacting protein of 85 kDa; cd12055"
                     /db_xref="CDD:212988"
     Site            order(56..62,66,70..71,83..85,95..96,98,100..101)
                     /site_type="other"
                     /note="putative ubiquitin interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:212988"
     Site            order(57,59,62,66,83..85,96,98,100..101)
                     /site_type="other"
                     /note="putative peptide ligand binding site [polypeptide
                     binding]"
                     /db_xref="CDD:212988"
     Region          241..296
                     /region_name="SH3_CIN85_3"
                     /note="Third Src Homology 3 domain (SH3C) of
                     Cbl-interacting protein of 85 kDa; cd12057"
                     /db_xref="CDD:212990"
     Site            order(245..252,254..255,259..260,273..276,286..287,289,
                     291..292,294)
                     /site_type="other"
                     /note="ubiquitin interaction site [polypeptide binding]"
                     /db_xref="CDD:212990"
     Site            order(246,248,251,255,274..276,287,289,291..292)
                     /site_type="other"
                     /note="putative peptide ligand binding site [polypeptide
                     binding]"
                     /db_xref="CDD:212990"
     CDS             1..632
                     /gene="SH3KBP1"
                     /coded_by="XM_054063916.1:118..2016"
                     /db_xref="GeneID:104063385"
ORIGIN      
        1 mdpeikkdmk kenaankppe kpinevsngs slqlseaiir tnkkgernrr rrcqvafsym
       61 pqnedelelk vgdiievvge veegwwegil ngktgmfpsn fikelsdsdd vgiaqeeqvk
      121 srksafegti lyrvapakid syrrynslkd atgsesdggd scstksegan ggttiqpkkv
      181 kgvgfgdifk dkpiklrprs ievendflpv dknigkklpp atatqeptki evdgktktke
      241 yckvifpyea qnddeltire gdvvtliskd cidvgwwege lngrrgvfpd nfvkllpsdf
      301 ekerpkkppp psapvikqgt tdrkheikkv pperpeclpn rteekerser eqkqldlqkp
      361 svpaippkkp rppkansvnr pgtlpprrpe rpvvpathtr sdspkvelvg stvsgtlekd
      421 ssersndidl egfdsvipia eklnhptttr pkatgrrpps qsltssslss pdffdspspe
      481 eereehvsit hkniemsrks rtvtisqvsd nktslppkpg glasgsnvqp slspslspgf
      541 hsiamgttgh rsnspslfvt egkpktehls qgqtaleelr tqikelrtii etmkdqqkke
      601 ikqllselde ekkirlrlqm evndikkalq sk
//
LOCUS       XP_053919901             624 aa            linear   VRT 09-MAR-2023
DEFINITION  SH3 domain-containing kinase-binding protein 1 isoform X7 [Cuculus
            canorus].
ACCESSION   XP_053919901
VERSION     XP_053919901.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063926.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..624
                     /product="SH3 domain-containing kinase-binding protein 1
                     isoform X7"
                     /calculated_mol_wt=69300
     Region          44..96
                     /region_name="SH3_CIN85_2"
                     /note="Second Src Homology 3 domain (SH3B) of
                     Cbl-interacting protein of 85 kDa; cd12055"
                     /db_xref="CDD:212988"
     Site            order(48..54,58,62..63,75..77,87..88,90,92..93)
                     /site_type="other"
                     /note="putative ubiquitin interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:212988"
     Site            order(49,51,54,58,75..77,88,90,92..93)
                     /site_type="other"
                     /note="putative peptide ligand binding site [polypeptide
                     binding]"
                     /db_xref="CDD:212988"
     Region          233..288
                     /region_name="SH3_CIN85_3"
                     /note="Third Src Homology 3 domain (SH3C) of
                     Cbl-interacting protein of 85 kDa; cd12057"
                     /db_xref="CDD:212990"
     Site            order(237..244,246..247,251..252,265..268,278..279,281,
                     283..284,286)
                     /site_type="other"
                     /note="ubiquitin interaction site [polypeptide binding]"
                     /db_xref="CDD:212990"
     Site            order(238,240,243,247,266..268,279,281,283..284)
                     /site_type="other"
                     /note="putative peptide ligand binding site [polypeptide
                     binding]"
                     /db_xref="CDD:212990"
     CDS             1..624
                     /gene="SH3KBP1"
                     /coded_by="XM_054063926.1:575..2449"
                     /db_xref="GeneID:104063385"
ORIGIN      
        1 mkkenaankp pekpinevsn gsslqlseai irtnkkgern rrrrcqvafs ympqnedele
       61 lkvgdiievv geveegwweg ilngktgmfp snfikelsds ddvgiaqeeq vksrksafeg
      121 tilyrvapak idsyrrynsl kdatgsesdg gdscstkseg anggttiqpk kvkgvgfgdi
      181 fkdkpiklrp rsievendfl pvdknigkkl ppatatqept kievdgktkt keyckvifpy
      241 eaqnddelti regdvvtlis kdcidvgwwe gelngrrgvf pdnfvkllps dfekerpkkp
      301 pppsapvikq gttdrkheik kvpperpecl pnrteekers ereqkqldlq kpsvpaippk
      361 kprppkansv nrpgtlpprr perpvvpath trsdspkvel vgstvsgtle kdssersndi
      421 dlegfdsvip iaeklnhptt trpkatgrrp psqsltsssl sspdffdsps peeereehvs
      481 ithkniemsr ksrtvtisqv sdnktslppk pgglasgsnv qpslspslsp gfhsiamgtt
      541 ghrsnspslf vtegkpkteh lsqgqtalee lrtqikelrt iietmkdqqk keikqllsel
      601 deekkirlrl qmevndikka lqsk
//
LOCUS       XP_053919909             547 aa            linear   VRT 09-MAR-2023
DEFINITION  SH3 domain-containing kinase-binding protein 1 isoform X8 [Cuculus
            canorus].
ACCESSION   XP_053919909
VERSION     XP_053919909.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063934.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..547
                     /product="SH3 domain-containing kinase-binding protein 1
                     isoform X8"
                     /calculated_mol_wt=60245
     Region          156..211
                     /region_name="SH3_CIN85_3"
                     /note="Third Src Homology 3 domain (SH3C) of
                     Cbl-interacting protein of 85 kDa; cd12057"
                     /db_xref="CDD:212990"
     Site            order(160..167,169..170,174..175,188..191,201..202,204,
                     206..207,209)
                     /site_type="other"
                     /note="ubiquitin interaction site [polypeptide binding]"
                     /db_xref="CDD:212990"
     Site            order(161,163,166,170,189..191,202,204,206..207)
                     /site_type="other"
                     /note="putative peptide ligand binding site [polypeptide
                     binding]"
                     /db_xref="CDD:212990"
     Region          <480..>547
                     /region_name="EnvC"
                     /note="Septal ring factor EnvC, activator of murein
                     hydrolases AmiA and AmiB [Cell cycle control, cell
                     division, chromosome partitioning]; COG4942"
                     /db_xref="CDD:443969"
     CDS             1..547
                     /gene="SH3KBP1"
                     /coded_by="XM_054063934.1:133..1776"
                     /db_xref="GeneID:104063385"
ORIGIN      
        1 mllsppspta paakgkkart gtwtlfshlq wastaagksa fegtilyrva pakidsyrry
       61 nslkdatgse sdggdscstk seganggtti qpkkvkgvgf gdifkdkpik lrprsieven
      121 dflpvdknig kklppatatq eptkievdgk tktkeyckvi fpyeaqndde ltiregdvvt
      181 liskdcidvg wwegelngrr gvfpdnfvkl lpsdfekerp kkppppsapv ikqgttdrkh
      241 eikkvpperp eclpnrteek ersereqkql dlqkpsvpai ppkkprppka nsvnrpgtlp
      301 prrperpvvp athtrsdspk velvgstvsg tlekdssers ndidlegfds vipiaeklnh
      361 ptttrpkatg rrppsqslts sslsspdffd spspeeeree hvsithknie msrksrtvti
      421 sqvsdnktsl ppkpgglasg snvqpslsps lspgfhsiam gttghrsnsp slfvtegkpk
      481 tehlsqgqta leelrtqike lrtiietmkd qqkkeikqll seldeekkir lrlqmevndi
      541 kkalqsk
//
LOCUS       XP_053919914             522 aa            linear   VRT 09-MAR-2023
DEFINITION  SH3 domain-containing kinase-binding protein 1 isoform X9 [Cuculus
            canorus].
ACCESSION   XP_053919914
VERSION     XP_053919914.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063939.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..522
                     /product="SH3 domain-containing kinase-binding protein 1
                     isoform X9"
                     /calculated_mol_wt=57357
     Region          131..186
                     /region_name="SH3_CIN85_3"
                     /note="Third Src Homology 3 domain (SH3C) of
                     Cbl-interacting protein of 85 kDa; cd12057"
                     /db_xref="CDD:212990"
     Site            order(135..142,144..145,149..150,163..166,176..177,179,
                     181..182,184)
                     /site_type="other"
                     /note="ubiquitin interaction site [polypeptide binding]"
                     /db_xref="CDD:212990"
     Site            order(136,138,141,145,164..166,177,179,181..182)
                     /site_type="other"
                     /note="putative peptide ligand binding site [polypeptide
                     binding]"
                     /db_xref="CDD:212990"
     Region          <455..>522
                     /region_name="EnvC"
                     /note="Septal ring factor EnvC, activator of murein
                     hydrolases AmiA and AmiB [Cell cycle control, cell
                     division, chromosome partitioning]; COG4942"
                     /db_xref="CDD:443969"
     CDS             1..522
                     /gene="SH3KBP1"
                     /coded_by="XM_054063939.1:133..1701"
                     /db_xref="GeneID:104063385"
ORIGIN      
        1 mllsppspta paakgkkart gtwtlfshlq wastaaglkd atgsesdggd scstksegan
       61 ggttiqpkkv kgvgfgdifk dkpiklrprs ievendflpv dknigkklpp atatqeptki
      121 evdgktktke yckvifpyea qnddeltire gdvvtliskd cidvgwwege lngrrgvfpd
      181 nfvkllpsdf ekerpkkppp psapvikqgt tdrkheikkv pperpeclpn rteekerser
      241 eqkqldlqkp svpaippkkp rppkansvnr pgtlpprrpe rpvvpathtr sdspkvelvg
      301 stvsgtlekd ssersndidl egfdsvipia eklnhptttr pkatgrrpps qsltssslss
      361 pdffdspspe eereehvsit hkniemsrks rtvtisqvsd nktslppkpg glasgsnvqp
      421 slspslspgf hsiamgttgh rsnspslfvt egkpktehls qgqtaleelr tqikelrtii
      481 etmkdqqkke ikqllselde ekkirlrlqm evndikkalq sk
//
LOCUS       XP_053919923             616 aa            linear   VRT 09-MAR-2023
DEFINITION  SH3 domain-containing kinase-binding protein 1 isoform X10 [Cuculus
            canorus].
ACCESSION   XP_053919923
VERSION     XP_053919923.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063948.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..616
                     /product="SH3 domain-containing kinase-binding protein 1
                     isoform X10"
                     /calculated_mol_wt=68389
     Region          3..55
                     /region_name="SH3_CIN85_1"
                     /note="First Src Homology 3 domain (SH3A) of
                     Cbl-interacting protein of 85 kDa; cd12052"
                     /db_xref="CDD:212985"
     Site            order(7..13,17,21..22,34..36,46..47,49,51..52)
                     /site_type="other"
                     /note="putative ubiquitin interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:212985"
     Site            order(8,10,13..14,16..17,34,36,47,51..52,54)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212985"
     Region          103..155
                     /region_name="SH3_CIN85_2"
                     /note="Second Src Homology 3 domain (SH3B) of
                     Cbl-interacting protein of 85 kDa; cd12055"
                     /db_xref="CDD:212988"
     Site            order(107..113,117,121..122,134..136,146..147,149,
                     151..152)
                     /site_type="other"
                     /note="putative ubiquitin interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:212988"
     Site            order(108,110,113,117,134..136,147,149,151..152)
                     /site_type="other"
                     /note="putative peptide ligand binding site [polypeptide
                     binding]"
                     /db_xref="CDD:212988"
     Region          267..322
                     /region_name="SH3_CIN85_3"
                     /note="Third Src Homology 3 domain (SH3C) of
                     Cbl-interacting protein of 85 kDa; cd12057"
                     /db_xref="CDD:212990"
     Site            order(271..278,280..281,285..286,299..302,312..313,315,
                     317..318,320)
                     /site_type="other"
                     /note="ubiquitin interaction site [polypeptide binding]"
                     /db_xref="CDD:212990"
     Site            order(272,274,277,281,300..302,313,315,317..318)
                     /site_type="other"
                     /note="putative peptide ligand binding site [polypeptide
                     binding]"
                     /db_xref="CDD:212990"
     CDS             1..616
                     /gene="SH3KBP1"
                     /coded_by="XM_054063948.1:557..2407"
                     /db_xref="GeneID:104063385"
ORIGIN      
        1 mveaivefdy kaqhddelti tvgdiitnik kddggwwegq lkgrrglfpd nfvreikkdm
       61 kkenaankpp ekpinevsng sslqlseaii rtnkkgernr rrrcqvafsy mpqnedelel
      121 kvgdiievvg eveegwwegi lngktgmfps nfikelsdsd dvgiaqeeqv ksslkdatgs
      181 esdggdscst kseganggtt iqpkkvkgvg fgdifkdkpi klrprsieve ndflpvdkni
      241 gkklppatat qeptkievdg ktktkeyckv ifpyeaqndd eltiregdvv tliskdcidv
      301 gwwegelngr rgvfpdnfvk llpsdfeker pkkppppsap vikqgttdrk heikkvpper
      361 peclpnrtee kersereqkq ldlqkpsvpa ippkkprppk ansvnrpgtl pprrperpvv
      421 pathtrsdsp kvelvgstvs gtlekdsser sndidlegfd svipiaekln hptttrpkat
      481 grrppsqslt svsdnktslp pkpgglasgs nvqpslspsl spgfhsiamg ttghrsnsps
      541 lfvtegkpkt ehlsqgqtal eelrtqikel rtiietmkdq qkkeikqlls eldeekkirl
      601 rlqmevndik kalqsk
//
LOCUS       XP_009559187             312 aa            linear   VRT 09-MAR-2023
DEFINITION  pyridoxal kinase [Cuculus canorus].
ACCESSION   XP_009559187
VERSION     XP_009559187.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560892.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..312
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..312
                     /product="pyridoxal kinase"
                     /calculated_mol_wt=34642
     Region          6..304
                     /region_name="ribokinase_pfkB_like"
                     /note="ribokinase/pfkB superfamily: Kinases that accept a
                     wide variety of substrates, including carbohydrates and
                     aromatic small molecules, all are phosphorylated at a
                     hydroxyl group. The superfamily includes ribokinase,
                     fructokinase, ketohexokinase; cl00192"
                     /db_xref="CDD:469648"
     Site            order(6,13,15..16,18,22,26,29,34..39,42,45,54..55,57,
                     64..65,71)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:238578"
     Site            order(12,19..20,43,46..47,52,84,86,231..232,235)
                     /site_type="other"
                     /note="pyridoxal binding site [chemical binding]"
                     /db_xref="CDD:238578"
     Site            order(113,118,148,150,153,186..187,199,223,225..226,230,
                     233..235,237,263,267)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:238578"
     CDS             1..312
                     /gene="PDXK"
                     /coded_by="XM_009560892.2:101..1039"
                     /db_xref="GeneID:104059246"
ORIGIN      
        1 mepecrvlsi qshvvrgyvg nkaatfplqv lgfevdtvns vqfsnhtgyd hwkgqvlnsd
       61 elhelyeglk lnkvnrydyv ltgytrdtsf lamvvdivqe lkqqnsnlvy vcdpvmgdkw
      121 sgegsmyvpk dllpvyrdkv vpvadiitpn qfeaelltgr kiytekeale vmdmlhamgp
      181 etvvitssdl qaplgndyli algshrktka dgtkvtqrir vespkvdavf vgtgdlfaam
      241 llawthkhpn nlkvacektv samqhvlqrt iksakaqage gnkpnsaqle lrmvqskkdi
      301 enpeiivkat vl
//
LOCUS       XP_053919944             560 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane 7 superfamily member 3 [Cuculus canorus].
ACCESSION   XP_053919944
VERSION     XP_053919944.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063969.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..560
                     /product="transmembrane 7 superfamily member 3"
                     /calculated_mol_wt=63304
     Region          286..493
                     /region_name="DUF4203"
                     /note="Domain of unknown function (DUF4203); pfam13886"
                     /db_xref="CDD:464018"
     CDS             1..560
                     /gene="TM7SF3"
                     /coded_by="XM_054063969.1:95..1777"
                     /db_xref="GeneID:104067398"
ORIGIN      
        1 mrlfpralvl wgflccgcgs gllelslgkf rnvllnqtnp veavirnias nvtvvifqvh
       61 aqqndvvisf dknpsvnssg tgvdkglvti lrpqqsvctw ylrsldasqv lstaisipyt
      121 ekdpipggcn lefdlevdpn iyldytlvdt hikfapanlg ytrganppsc dsgtgqnsrw
      181 rlrydvyqyf lpenelsqmv lmshirkmse vqsikangfk mltltsddkt niyfsslpgq
      241 gviynvivwd plwntsaayi pvhtyacsfs dlvdncfsls kistkiffta lavlglftcf
      301 fghrfwktdl ffmgfiftgf fffifitrvt glgydvrlil tavtgviggl flvanwwrfg
      361 svvlcmfvig lvlgflfsst vfftplgdyr vfrddvvfwv tfssvalmip vlfvgcpril
      421 nilasgivgs ytvilaiacy vytslayitl nllrrvlndy fnraytnvpf qtndfiilsv
      481 wtmlalsgvt vqlrrersev pfpphpyltw krererrstn vldpshhipp lrerihnkll
      541 hikeffhkeq pagertplll
//
LOCUS       XP_053919949             217 aa            linear   VRT 09-MAR-2023
DEFINITION  FGFR1 oncogene partner 2 [Cuculus canorus].
ACCESSION   XP_053919949
VERSION     XP_053919949.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063974.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..217
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..217
                     /product="FGFR1 oncogene partner 2"
                     /calculated_mol_wt=25095
     Region          4..185
                     /region_name="SIKE"
                     /note="SIKE family; pfam05769"
                     /db_xref="CDD:461735"
     CDS             1..217
                     /gene="FGFR1OP2"
                     /coded_by="XM_054063974.1:184..837"
                     /db_xref="GeneID:104067173"
ORIGIN      
        1 mkmsctieka ladakalver lrehdnaaea lieqttalnk rveamkqyqe eiqelnevar
       61 hrprstlvmg iqqenrqire lqqenkelrt sleehqsale limskyreqm frllmaskkd
      121 dpsiimklke qhskelqvhv dqisemaavm rkaieiderh gckeqeriiq leqenkglre
      181 ilqitresfl nlkkedases tslsglvtss dlslrks
//
LOCUS       XP_053919959            1253 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA repair protein REV1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053919959
VERSION     XP_053919959.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063984.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1253
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1253
                     /product="DNA repair protein REV1 isoform X1"
                     /calculated_mol_wt=138237
     Region          51..134
                     /region_name="BRCT_Rev1"
                     /note="BRCT domain of DNA repair protein Rev1 and similar
                     proteins; cd17719"
                     /db_xref="CDD:349351"
     Region          351..833
                     /region_name="PolY_Rev1"
                     /note="DNA polymerase Rev1; cd01701"
                     /db_xref="CDD:176455"
     Site            order(354..356,358..362,364..365,372,425..430,450,
                     518..519,522,525,531..532,534,576..577,579..580,634,
                     658..665,668,694..695,719..727,761,782..784,788..792,794)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:176455"
     Site            order(360,425..430,518..519,522,525,531,579..580,634)
                     /site_type="active"
                     /db_xref="CDD:176455"
     Region          937..970
                     /region_name="Rev1_UBM2"
                     /note="Ubiquitin-Binding Motif 2 (UBM2) of Y-family
                     polymerase Rev1; cd19318"
                     /db_xref="CDD:412037"
     Site            order(939..941,945..947,949..950,953..955,957..958,961,
                     965)
                     /site_type="other"
                     /note="ubiquitin binding interface [polypeptide binding]"
                     /db_xref="CDD:412037"
     Region          1013..1048
                     /region_name="Rev1_UBM2"
                     /note="Ubiquitin-Binding Motif 2 (UBM2) of Y-family
                     polymerase Rev1; cd19318"
                     /db_xref="CDD:412037"
     Site            order(1017..1019,1023..1025,1027..1028,1031..1033,
                     1035..1036,1039,1043)
                     /site_type="other"
                     /note="ubiquitin binding interface [polypeptide binding]"
                     /db_xref="CDD:412037"
     Region          1159..1252
                     /region_name="Rev1_C"
                     /note="C-terminal domain of the Y-family polymerase Rev1;
                     cd12145"
                     /db_xref="CDD:213388"
     Site            order(1160..1165,1173..1174,1177,1181,1183..1185,
                     1187..1188,1191..1192)
                     /site_type="other"
                     /note="Polymerase eta interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:213388"
     CDS             1..1253
                     /gene="REV1"
                     /coded_by="XM_054063984.1:213..3974"
                     /db_xref="GeneID:104056648"
ORIGIN      
        1 mrrggwrkra adgdgwgiwg gymsakvkkl edqfrsdsai qhqkdgnsss ifsgvaiyvn
       61 gftdpsadel rrlmmlhggq yhvyysrskt thiiatnlpn akikelkgek vvrpewimes
      121 ikagrllsyi pyqlytkqss vqkglnfnnv ckpedavpgp sniakdlnrv nhikkcemen
      181 emtpngicsw neeeeeetds fgyteleeil prwkqngiqs hkdntavfng hthttsalkt
      241 qdclvpsgnd vasrfspgpv qeegktekgm vdfrdcrtqq lqqsnkntdf pwnphrtmsn
      301 sssssslhsn akingahhst lqgpsstkst svptaskaas lpvskpsdys fisdfysrsr
      361 lhhistwkce ltefvnnlqr knsgvfpgre klkkwkagrs alktdtgnvs vassskpqsc
      421 imhvdmdcff vsvairnrpd lkgkpvavts nrgagkaplr pganpqleqq yyqnrllngk
      481 seiripdkld slvwehldst rvngadfdlt vlsmaeiasc syearqvgik ngmffgqakk
      541 lcpnlqavsy dfdaykevar tvyeilasyt hnieavscde alvditeilt etrltpddla
      601 nairteikaq tkctasvgmg snillarmat rkakpdgqyh lkpeevddfi rgqlvtslpg
      661 vgrtmeskla slgiktcgdl qcasmsklqk efgpktgqml yrfcrglddr pvrtekerks
      721 vsaeinygir ftqpkeaeaf llslseeiqr rleaagmkgk rltlkimvrk agapvepaky
      781 gghgicdnia rtvtldhatd sakvigketl nmfhtmklni sdmrgvgiqv qqlvpiskat
      841 sansavqsgh lpggshsvid lfhvqkakkc seeehkevfv aamdleissd srtctflpsr
      901 gthltsglns nvnntestvk cngvhspisv ksrlnlsiev psasqldksv lealppdlre
      961 qveqiytlqq genygdskke pingcnaall sqpvgtvllq ipelqepntn mginvialpa
     1021 fsqvdpevfa alpaelqael kdaydqrqkq seqqpanafv sknpflhlkq attknkkkir
     1081 kknavspvkk vqsplkskli gspaknmlat sgspqklidg flkqegaaaq peaipstsds
     1141 sgpsalqteq sssfrpqapn lagavefsdv ktllkewitt isdpmeedil qvvkyctdli
     1201 eekdlekldl vvkymkrlmq ssvesvwnma fdfildnvqv vlqqtygstl kvi
//
LOCUS       XP_053919963            1253 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA repair protein REV1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053919963
VERSION     XP_053919963.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063988.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1253
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1253
                     /product="DNA repair protein REV1 isoform X1"
                     /calculated_mol_wt=138237
     Region          51..134
                     /region_name="BRCT_Rev1"
                     /note="BRCT domain of DNA repair protein Rev1 and similar
                     proteins; cd17719"
                     /db_xref="CDD:349351"
     Region          351..833
                     /region_name="PolY_Rev1"
                     /note="DNA polymerase Rev1; cd01701"
                     /db_xref="CDD:176455"
     Site            order(354..356,358..362,364..365,372,425..430,450,
                     518..519,522,525,531..532,534,576..577,579..580,634,
                     658..665,668,694..695,719..727,761,782..784,788..792,794)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:176455"
     Site            order(360,425..430,518..519,522,525,531,579..580,634)
                     /site_type="active"
                     /db_xref="CDD:176455"
     Region          937..970
                     /region_name="Rev1_UBM2"
                     /note="Ubiquitin-Binding Motif 2 (UBM2) of Y-family
                     polymerase Rev1; cd19318"
                     /db_xref="CDD:412037"
     Site            order(939..941,945..947,949..950,953..955,957..958,961,
                     965)
                     /site_type="other"
                     /note="ubiquitin binding interface [polypeptide binding]"
                     /db_xref="CDD:412037"
     Region          1013..1048
                     /region_name="Rev1_UBM2"
                     /note="Ubiquitin-Binding Motif 2 (UBM2) of Y-family
                     polymerase Rev1; cd19318"
                     /db_xref="CDD:412037"
     Site            order(1017..1019,1023..1025,1027..1028,1031..1033,
                     1035..1036,1039,1043)
                     /site_type="other"
                     /note="ubiquitin binding interface [polypeptide binding]"
                     /db_xref="CDD:412037"
     Region          1159..1252
                     /region_name="Rev1_C"
                     /note="C-terminal domain of the Y-family polymerase Rev1;
                     cd12145"
                     /db_xref="CDD:213388"
     Site            order(1160..1165,1173..1174,1177,1181,1183..1185,
                     1187..1188,1191..1192)
                     /site_type="other"
                     /note="Polymerase eta interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:213388"
     CDS             1..1253
                     /gene="REV1"
                     /coded_by="XM_054063988.1:125..3886"
                     /db_xref="GeneID:104056648"
ORIGIN      
        1 mrrggwrkra adgdgwgiwg gymsakvkkl edqfrsdsai qhqkdgnsss ifsgvaiyvn
       61 gftdpsadel rrlmmlhggq yhvyysrskt thiiatnlpn akikelkgek vvrpewimes
      121 ikagrllsyi pyqlytkqss vqkglnfnnv ckpedavpgp sniakdlnrv nhikkcemen
      181 emtpngicsw neeeeeetds fgyteleeil prwkqngiqs hkdntavfng hthttsalkt
      241 qdclvpsgnd vasrfspgpv qeegktekgm vdfrdcrtqq lqqsnkntdf pwnphrtmsn
      301 sssssslhsn akingahhst lqgpsstkst svptaskaas lpvskpsdys fisdfysrsr
      361 lhhistwkce ltefvnnlqr knsgvfpgre klkkwkagrs alktdtgnvs vassskpqsc
      421 imhvdmdcff vsvairnrpd lkgkpvavts nrgagkaplr pganpqleqq yyqnrllngk
      481 seiripdkld slvwehldst rvngadfdlt vlsmaeiasc syearqvgik ngmffgqakk
      541 lcpnlqavsy dfdaykevar tvyeilasyt hnieavscde alvditeilt etrltpddla
      601 nairteikaq tkctasvgmg snillarmat rkakpdgqyh lkpeevddfi rgqlvtslpg
      661 vgrtmeskla slgiktcgdl qcasmsklqk efgpktgqml yrfcrglddr pvrtekerks
      721 vsaeinygir ftqpkeaeaf llslseeiqr rleaagmkgk rltlkimvrk agapvepaky
      781 gghgicdnia rtvtldhatd sakvigketl nmfhtmklni sdmrgvgiqv qqlvpiskat
      841 sansavqsgh lpggshsvid lfhvqkakkc seeehkevfv aamdleissd srtctflpsr
      901 gthltsglns nvnntestvk cngvhspisv ksrlnlsiev psasqldksv lealppdlre
      961 qveqiytlqq genygdskke pingcnaall sqpvgtvllq ipelqepntn mginvialpa
     1021 fsqvdpevfa alpaelqael kdaydqrqkq seqqpanafv sknpflhlkq attknkkkir
     1081 kknavspvkk vqsplkskli gspaknmlat sgspqklidg flkqegaaaq peaipstsds
     1141 sgpsalqteq sssfrpqapn lagavefsdv ktllkewitt isdpmeedil qvvkyctdli
     1201 eekdlekldl vvkymkrlmq ssvesvwnma fdfildnvqv vlqqtygstl kvi
//
LOCUS       XP_053919968             740 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA repair protein REV1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053919968
VERSION     XP_053919968.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054063993.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..740
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..740
                     /product="DNA repair protein REV1 isoform X2"
                     /calculated_mol_wt=80966
     Region          <1..320
                     /region_name="PolY_Rev1"
                     /note="DNA polymerase Rev1; cd01701"
                     /db_xref="CDD:176455"
     Region          424..457
                     /region_name="Rev1_UBM2"
                     /note="Ubiquitin-Binding Motif 2 (UBM2) of Y-family
                     polymerase Rev1; cd19318"
                     /db_xref="CDD:412037"
     Site            order(426..428,432..434,436..437,440..442,444..445,448,
                     452)
                     /site_type="other"
                     /note="ubiquitin binding interface [polypeptide binding]"
                     /db_xref="CDD:412037"
     Region          500..535
                     /region_name="Rev1_UBM2"
                     /note="Ubiquitin-Binding Motif 2 (UBM2) of Y-family
                     polymerase Rev1; cd19318"
                     /db_xref="CDD:412037"
     Site            order(504..506,510..512,514..515,518..520,522..523,526,
                     530)
                     /site_type="other"
                     /note="ubiquitin binding interface [polypeptide binding]"
                     /db_xref="CDD:412037"
     Region          646..739
                     /region_name="Rev1_C"
                     /note="C-terminal domain of the Y-family polymerase Rev1;
                     cd12145"
                     /db_xref="CDD:213388"
     Site            order(647..652,660..661,664,668,670..672,674..675,
                     678..679)
                     /site_type="other"
                     /note="Polymerase eta interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:213388"
     CDS             1..740
                     /gene="REV1"
                     /coded_by="XM_054063993.1:406..2628"
                     /db_xref="GeneID:104056648"
ORIGIN      
        1 maeiascsye arqvgikngm ffgqakklcp nlqavsydfd aykevartvy eilasythni
       61 eavscdealv diteiltetr ltpddlanai rteikaqtkc tasvgmgsni llarmatrka
      121 kpdgqyhlkp eevddfirgq lvtslpgvgr tmesklaslg iktcgdlqca smsklqkefg
      181 pktgqmlyrf crglddrpvr tekerksvsa einygirftq pkeaeaflls lseeiqrrle
      241 aagmkgkrlt lkimvrkaga pvepakyggh gicdniartv tldhatdsak vigketlnmf
      301 htmklnisdm rgvgiqvqql vpiskatsan savqsghlpg gshsvidlfh vqkakkcsee
      361 ehkevfvaam dleissdsrt ctflpsrgth ltsglnsnvn ntestvkcng vhspisvksr
      421 lnlsievpsa sqldksvlea lppdlreqve qiytlqqgen ygdskkepin gcnaallsqp
      481 vgtvllqipe lqepntnmgi nvialpafsq vdpevfaalp aelqaelkda ydqrqkqseq
      541 qpanafvskn pflhlkqatt knkkkirkkn avspvkkvqs plkskligsp aknmlatsgs
      601 pqklidgflk qegaaaqpea ipstsdssgp salqteqsss frpqapnlag avefsdvktl
      661 lkewittisd pmeedilqvv kyctdlieek dlekldlvvk ymkrlmqssv esvwnmafdf
      721 ildnvqvvlq qtygstlkvi
//
LOCUS       XP_053919981             531 aa            linear   VRT 09-MAR-2023
DEFINITION  6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053919981
VERSION     XP_053919981.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064006.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..531
                     /product="6-phosphofructo-2-kinase/fructose-2,
                     6-bisphosphatase 3 isoform X1"
                     /calculated_mol_wt=60942
     Region          24..247
                     /region_name="6PF2K"
                     /note="6-phosphofructo-2-kinase; pfam01591"
                     /db_xref="CDD:396253"
     Region          250..433
                     /region_name="His_Phos_1"
                     /note="Histidine phosphatase superfamily (branch 1);
                     pfam00300"
                     /db_xref="CDD:459751"
     CDS             1..531
                     /gene="PFKFB3"
                     /coded_by="XM_054064006.1:519..2114"
                     /db_xref="GeneID:104065019"
ORIGIN      
        1 mpmeltqsri qkiwlpndnr palprrscgp qlansptviv mvglpargkt yiskkltryl
       61 nwigvptkvf nvgeyrreav khyssydffr pdneeamkvr kqcalaalrd vklylteegg
      121 qiavfdatnt trerrgmiln fakengfkvf fiesvcndpt vvatnvmevk lsspdyrdcn
      181 stdamedfmk rincyqasyq pldpdnydre lslikvidvg rrflvnrvqd hiqsrivyyl
      241 mnihvqprti ylcrhgesdf nlkgkiggds glsnrgkkfa malnkfveeq nlkdlkvwts
      301 qlkrtiqtae alqlpyeqwk alneidagvc eemtyeeire qhpeefalrd qdkyyyryps
      361 gesyqdlvqr lepvimeler qenvlvichq avmrcllayf ldksadempy lkcplhtvlk
      421 ltpvaygcrv esislnieav nthrerpeea kkgpnplmrr nsvtplaspe ptkkprinsf
      481 eehvavssal pgcvpqevpt qlpgqpllgk aclrpvchfl kvfsllifpr t
//
LOCUS       XP_009565735             514 aa            linear   VRT 09-MAR-2023
DEFINITION  6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 isoform X2
            [Cuculus canorus].
ACCESSION   XP_009565735
VERSION     XP_009565735.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009567440.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..514
                     /product="6-phosphofructo-2-kinase/fructose-2,
                     6-bisphosphatase 3 isoform X2"
                     /calculated_mol_wt=58991
     Region          24..247
                     /region_name="6PF2K"
                     /note="6-phosphofructo-2-kinase; pfam01591"
                     /db_xref="CDD:396253"
     Region          250..433
                     /region_name="His_Phos_1"
                     /note="Histidine phosphatase superfamily (branch 1);
                     pfam00300"
                     /db_xref="CDD:459751"
     CDS             1..514
                     /gene="PFKFB3"
                     /coded_by="XM_009567440.2:517..2061"
                     /db_xref="GeneID:104065019"
ORIGIN      
        1 mpmeltqsri qkiwlpndnr palprrscgp qlansptviv mvglpargkt yiskkltryl
       61 nwigvptkvf nvgeyrreav khyssydffr pdneeamkvr kqcalaalrd vklylteegg
      121 qiavfdatnt trerrgmiln fakengfkvf fiesvcndpt vvatnvmevk lsspdyrdcn
      181 stdamedfmk rincyqasyq pldpdnydre lslikvidvg rrflvnrvqd hiqsrivyyl
      241 mnihvqprti ylcrhgesdf nlkgkiggds glsnrgkkfa malnkfveeq nlkdlkvwts
      301 qlkrtiqtae alqlpyeqwk alneidagvc eemtyeeire qhpeefalrd qdkyyyryps
      361 gesyqdlvqr lepvimeler qenvlvichq avmrcllayf ldksadempy lkcplhtvlk
      421 ltpvaygcrv esislnieav nthrerpeea kkgpnplmrr nsvtplaspe ptkkprinsf
      481 eehvavssal pgcvpqevpt qlpgqnmnns qkps
//
LOCUS       XP_053919993             514 aa            linear   VRT 09-MAR-2023
DEFINITION  6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053919993
VERSION     XP_053919993.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064018.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..514
                     /product="6-phosphofructo-2-kinase/fructose-2,
                     6-bisphosphatase 3 isoform X3"
                     /calculated_mol_wt=58887
     Region          24..247
                     /region_name="6PF2K"
                     /note="6-phosphofructo-2-kinase; pfam01591"
                     /db_xref="CDD:396253"
     Region          250..433
                     /region_name="His_Phos_1"
                     /note="Histidine phosphatase superfamily (branch 1);
                     pfam00300"
                     /db_xref="CDD:459751"
     CDS             1..514
                     /gene="PFKFB3"
                     /coded_by="XM_054064018.1:518..2062"
                     /db_xref="GeneID:104065019"
ORIGIN      
        1 mpmeltqsri qkiwlpndnr palprrscgp qlansptviv mvglpargkt yiskkltryl
       61 nwigvptkvf nvgeyrreav khyssydffr pdneeamkvr kqcalaalrd vklylteegg
      121 qiavfdatnt trerrgmiln fakengfkvf fiesvcndpt vvatnvmevk lsspdyrdcn
      181 stdamedfmk rincyqasyq pldpdnydre lslikvidvg rrflvnrvqd hiqsrivyyl
      241 mnihvqprti ylcrhgesdf nlkgkiggds glsnrgkkfa malnkfveeq nlkdlkvwts
      301 qlkrtiqtae alqlpyeqwk alneidagvc eemtyeeire qhpeefalrd qdkyyyryps
      361 gesyqdlvqr lepvimeler qenvlvichq avmrcllayf ldksadempy lkcplhtvlk
      421 ltpvaygcrv esislnieav nthrerpeea kkgpnplmrr nsvtplaspe ptkkprinsf
      481 eehvavssal pgcvpqevpt qlpgqpllgk aclt
//
LOCUS       XP_053920001             513 aa            linear   VRT 09-MAR-2023
DEFINITION  6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 isoform X4
            [Cuculus canorus].
ACCESSION   XP_053920001
VERSION     XP_053920001.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064026.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..513
                     /product="6-phosphofructo-2-kinase/fructose-2,
                     6-bisphosphatase 3 isoform X4"
                     /calculated_mol_wt=58786
     Region          24..247
                     /region_name="6PF2K"
                     /note="6-phosphofructo-2-kinase; pfam01591"
                     /db_xref="CDD:396253"
     Region          250..433
                     /region_name="His_Phos_1"
                     /note="Histidine phosphatase superfamily (branch 1);
                     pfam00300"
                     /db_xref="CDD:459751"
     CDS             1..513
                     /gene="PFKFB3"
                     /coded_by="XM_054064026.1:518..2059"
                     /db_xref="GeneID:104065019"
ORIGIN      
        1 mpmeltqsri qkiwlpndnr palprrscgp qlansptviv mvglpargkt yiskkltryl
       61 nwigvptkvf nvgeyrreav khyssydffr pdneeamkvr kqcalaalrd vklylteegg
      121 qiavfdatnt trerrgmiln fakengfkvf fiesvcndpt vvatnvmevk lsspdyrdcn
      181 stdamedfmk rincyqasyq pldpdnydre lslikvidvg rrflvnrvqd hiqsrivyyl
      241 mnihvqprti ylcrhgesdf nlkgkiggds glsnrgkkfa malnkfveeq nlkdlkvwts
      301 qlkrtiqtae alqlpyeqwk alneidagvc eemtyeeire qhpeefalrd qdkyyyryps
      361 gesyqdlvqr lepvimeler qenvlvichq avmrcllayf ldksadempy lkcplhtvlk
      421 ltpvaygcrv esislnieav nthrerpeea kkgpnplmrr nsvtplaspe ptkkprinsf
      481 eehvavssal pgcvpqevpt qlpgqpllgk acl
//
LOCUS       XP_053920009             510 aa            linear   VRT 09-MAR-2023
DEFINITION  6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 isoform X5
            [Cuculus canorus].
ACCESSION   XP_053920009
VERSION     XP_053920009.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064034.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..510
                     /product="6-phosphofructo-2-kinase/fructose-2,
                     6-bisphosphatase 3 isoform X5"
                     /calculated_mol_wt=58442
     Region          4..226
                     /region_name="6PF2K"
                     /note="6-phosphofructo-2-kinase; pfam01591"
                     /db_xref="CDD:396253"
     Region          229..412
                     /region_name="His_Phos_1"
                     /note="Histidine phosphatase superfamily (branch 1);
                     pfam00300"
                     /db_xref="CDD:459751"
     CDS             1..510
                     /gene="PFKFB3"
                     /coded_by="XM_054064034.1:127..1659"
                     /db_xref="GeneID:104065019"
ORIGIN      
        1 mpfrkacgpq lansptvivm vglpargkty iskkltryln wigvptkvfn vgeyrreavk
       61 hyssydffrp dneeamkvrk qcalaalrdv klylteeggq iavfdatntt rerrgmilnf
      121 akengfkvff iesvcndptv vatnvmevkl sspdyrdcns tdamedfmkr incyqasyqp
      181 ldpdnydrel slikvidvgr rflvnrvqdh iqsrivyylm nihvqprtiy lcrhgesdfn
      241 lkgkiggdsg lsnrgkkfam alnkfveeqn lkdlkvwtsq lkrtiqtaea lqlpyeqwka
      301 lneidagvce emtyeeireq hpeefalrdq dkyyyrypsg esyqdlvqrl epvimelerq
      361 envlvichqa vmrcllayfl dksadempyl kcplhtvlkl tpvaygcrve sislnieavn
      421 threrpeeak kgpnplmrrn svtplaspep tkkprinsfe ehvavssalp gcvpqevptq
      481 lpgqpllgka clrpvchflk vfsllifprt
//
LOCUS       XP_053920016             457 aa            linear   VRT 09-MAR-2023
DEFINITION  6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 isoform X6
            [Cuculus canorus].
ACCESSION   XP_053920016
VERSION     XP_053920016.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064041.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..457
                     /product="6-phosphofructo-2-kinase/fructose-2,
                     6-bisphosphatase 3 isoform X6"
                     /calculated_mol_wt=52892
     Region          24..247
                     /region_name="6PF2K"
                     /note="6-phosphofructo-2-kinase; pfam01591"
                     /db_xref="CDD:396253"
     Region          250..433
                     /region_name="His_Phos_1"
                     /note="Histidine phosphatase superfamily (branch 1);
                     pfam00300"
                     /db_xref="CDD:459751"
     CDS             1..457
                     /gene="PFKFB3"
                     /coded_by="XM_054064041.1:518..1891"
                     /db_xref="GeneID:104065019"
ORIGIN      
        1 mpmeltqsri qkiwlpndnr palprrscgp qlansptviv mvglpargkt yiskkltryl
       61 nwigvptkvf nvgeyrreav khyssydffr pdneeamkvr kqcalaalrd vklylteegg
      121 qiavfdatnt trerrgmiln fakengfkvf fiesvcndpt vvatnvmevk lsspdyrdcn
      181 stdamedfmk rincyqasyq pldpdnydre lslikvidvg rrflvnrvqd hiqsrivyyl
      241 mnihvqprti ylcrhgesdf nlkgkiggds glsnrgkkfa malnkfveeq nlkdlkvwts
      301 qlkrtiqtae alqlpyeqwk alneidagvc eemtyeeire qhpeefalrd qdkyyyryps
      361 gesyqdlvqr lepvimeler qenvlvichq avmrcllayf ldksadempy lkcplhtvlk
      421 ltpvaygcrv esislnieav nthrerpenm nnsqkps
//
LOCUS       XP_053920034            1572 aa            linear   VRT 09-MAR-2023
DEFINITION  membrane-associated guanylate kinase, WW and PDZ domain-containing
            protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053920034
VERSION     XP_053920034.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064059.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1572
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1572
                     /product="membrane-associated guanylate kinase, WW and PDZ
                     domain-containing protein 2 isoform X1"
                     /calculated_mol_wt=173581
     Region          14..99
                     /region_name="PDZ0_MAGI-1_3-like"
                     /note="PDZ domain 0 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06730"
                     /db_xref="CDD:467212"
     Site            order(27..33,45,48,79,83,86..87)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467212"
     Region          118..>206
                     /region_name="NK"
                     /note="Nucleoside/nucleotide kinase (NK) is a protein
                     superfamily consisting of multiple families of enzymes
                     that share structural similarity and are functionally
                     related to the catalysis of the reversible phosphate group
                     transfer from nucleoside triphosphates...; cl17190"
                     /db_xref="CDD:450170"
     Region          198..259
                     /region_name="MAGI_u1"
                     /note="Unstructured region on MAGI; pfam16663"
                     /db_xref="CDD:435496"
     Region          306..336
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(320,331)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          351..382
                     /region_name="WW"
                     /note="Domain with 2 conserved Trp (W) residues;
                     smart00456"
                     /db_xref="CDD:197736"
     Site            order(366,377)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          468..552
                     /region_name="PDZ1_MAGI-1_3-like"
                     /note="PDZ domain 1 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06731"
                     /db_xref="CDD:467213"
     Site            order(468,489..493,495,516,518,524,526..527,549,551..552)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467213"
     Site            order(479..485,497,500,530,534,537..538)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467213"
     Region          644..725
                     /region_name="PDZ2_MAGI-1_3-like"
                     /note="PDZ domain 2 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06732"
                     /db_xref="CDD:467214"
     Site            order(657..663,672,675,702,706,709..710)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467214"
     Region          805..889
                     /region_name="PDZ3_MAGI-1_3-like"
                     /note="PDZ domain 3 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06733"
                     /db_xref="CDD:467215"
     Site            order(816..822,834,837,867,871,874..875)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467215"
     Region          978..1066
                     /region_name="PDZ4_MAGI-1_3-like"
                     /note="PDZ domain 4 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06734"
                     /db_xref="CDD:467216"
     Site            order(988..994,1013,1016,1046,1050,1053..1054)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467216"
     Region          1216..1298
                     /region_name="PDZ5_MAGI-1_3-like"
                     /note="PDZ domain 5 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06735"
                     /db_xref="CDD:467217"
     Site            order(1227..1233,1245,1248,1278,1282,1285..1286)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467217"
     CDS             1..1572
                     /gene="MAGI2"
                     /coded_by="XM_054064059.1:69..4787"
                     /db_xref="GeneID:104059683"
ORIGIN      
        1 mskglkkksh wtsrvheivi vrnaegqlgf elkggaengq fpylgevkpg kvayeggskl
       61 vpeelllevn etpvagltir dvlavikhck dpirlkcvkq ggivdkdlrh ylnlrfqkgs
      121 vdhelqqiir dnlylrtvpc ttrphkegev pgvdyifitv edfmeleksg allesgtyed
      181 nyygtpkppa epaplllnvt dqilpggtpg aegkrkrnks vsnmektgve ppeeeeeerp
      241 vvngndvtvt pesseheeks tgasaevsst qpcpepgytq peeakedmdv tkqtkpeend
      301 dlgplpdnwe maytekgevy fidhntktts wldprlakka kppeeckene lpygwekidd
      361 piygtyyvdh inrrtqfenp vleakrklqq hnmpnaelgt kpmqaqgfrv enssstlprp
      421 kfahprpapk rsrsvndlsq yqrdpvgtrr lhekplftrd asqlkgtfls ttlkksnmgf
      481 gftiiggdep deflqvksvi pdgpaaqdgk metgdvivyi nevcvlghth advvklfqsv
      541 pigqsvnlvl crgyplpfdp edpansmvpp lavmerppvv vngrhnyety leyisrtsqs
      601 vpdvtdrpph slhsipadsq ldstfpppah ddnvsmassg atqaelmtlt ivkgaqgfgf
      661 tiadsptgqr vkqildiqgc pglcegdliv einqqnvqnl shaevvdilk ecpvgsetsl
      721 iihrggffsp wktpkpmmer wenqgspqts lsapampqni pyppalhrss fpdsteafdp
      781 rkpdpyelye ksraiyesrr pdykeldvhl rrmesgfgfr ilggdepgqp iligaviamg
      841 sadrdgrlhp gdelvyvdgi pvagkthryv idlmhnaarn gqvnltvrrk vlptepssqk
      901 gppppgttpp rsspstrkma nnqgepcpen grspgsvsth hssprsdytt yansnhavss
      961 snatppegft sqslqtsdvv ihrkenegfg fviisslnrp esgstitvph kigriidgsp
     1021 adrcaklkvg drilavngqs iinmphadiv klikdaglsv tlriipqeas hytelnspas
     1081 apssekqspm aqqhspmaqq splaqqspva qhspvaqppp pqplqlqghe nsyrsevkar
     1141 qdvkpdirqp pftdyrqsst dyrqppldyr hppvmdyqqp ppldyrqppm idyrqhspdt
     1201 rqyplseyrq pqdfdyftvd lekgakgfgf sirggreykm dlyvlrlaed gpairngrmr
     1261 vgdqiieing estrdmthar aieliksggr rvrlllkrgt gqvpeydepn swsaptatst
     1321 glpevalsld diisplfssh iappsdpshq ispeatwdik rehdvrkpke lsvnghkkkr
     1381 lgeqrersas pkkvdrskhe easwkgyseg knktidggrp tseskvvghs imieagareh
     1441 vcagtsdeqf grlrktegkr ggslskkedh kstntsekks aaasdhvkid aggtktyssn
     1501 rcsspgsdvd nsqrdpdgkp sefprkghlh sistrttntt vrkatvspgp wkipgsdklp
     1561 svlksgtsam sr
//
LOCUS       XP_053920043            1571 aa            linear   VRT 09-MAR-2023
DEFINITION  membrane-associated guanylate kinase, WW and PDZ domain-containing
            protein 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053920043
VERSION     XP_053920043.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064068.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1571
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1571
                     /product="membrane-associated guanylate kinase, WW and PDZ
                     domain-containing protein 2 isoform X2"
                     /calculated_mol_wt=173482
     Region          14..99
                     /region_name="PDZ0_MAGI-1_3-like"
                     /note="PDZ domain 0 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06730"
                     /db_xref="CDD:467212"
     Site            order(27..33,45,48,79,83,86..87)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467212"
     Region          118..>206
                     /region_name="NK"
                     /note="Nucleoside/nucleotide kinase (NK) is a protein
                     superfamily consisting of multiple families of enzymes
                     that share structural similarity and are functionally
                     related to the catalysis of the reversible phosphate group
                     transfer from nucleoside triphosphates...; cl17190"
                     /db_xref="CDD:450170"
     Region          198..259
                     /region_name="MAGI_u1"
                     /note="Unstructured region on MAGI; pfam16663"
                     /db_xref="CDD:435496"
     Region          306..336
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(320,331)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          351..382
                     /region_name="WW"
                     /note="Domain with 2 conserved Trp (W) residues;
                     smart00456"
                     /db_xref="CDD:197736"
     Site            order(366,377)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          467..551
                     /region_name="PDZ1_MAGI-1_3-like"
                     /note="PDZ domain 1 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06731"
                     /db_xref="CDD:467213"
     Site            order(467,488..492,494,515,517,523,525..526,548,550..551)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467213"
     Site            order(478..484,496,499,529,533,536..537)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467213"
     Region          643..724
                     /region_name="PDZ2_MAGI-1_3-like"
                     /note="PDZ domain 2 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06732"
                     /db_xref="CDD:467214"
     Site            order(656..662,671,674,701,705,708..709)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467214"
     Region          804..888
                     /region_name="PDZ3_MAGI-1_3-like"
                     /note="PDZ domain 3 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06733"
                     /db_xref="CDD:467215"
     Site            order(815..821,833,836,866,870,873..874)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467215"
     Region          977..1065
                     /region_name="PDZ4_MAGI-1_3-like"
                     /note="PDZ domain 4 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06734"
                     /db_xref="CDD:467216"
     Site            order(987..993,1012,1015,1045,1049,1052..1053)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467216"
     Region          1215..1297
                     /region_name="PDZ5_MAGI-1_3-like"
                     /note="PDZ domain 5 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06735"
                     /db_xref="CDD:467217"
     Site            order(1226..1232,1244,1247,1277,1281,1284..1285)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467217"
     CDS             1..1571
                     /gene="MAGI2"
                     /coded_by="XM_054064068.1:69..4784"
                     /db_xref="GeneID:104059683"
ORIGIN      
        1 mskglkkksh wtsrvheivi vrnaegqlgf elkggaengq fpylgevkpg kvayeggskl
       61 vpeelllevn etpvagltir dvlavikhck dpirlkcvkq ggivdkdlrh ylnlrfqkgs
      121 vdhelqqiir dnlylrtvpc ttrphkegev pgvdyifitv edfmeleksg allesgtyed
      181 nyygtpkppa epaplllnvt dqilpggtpg aegkrkrnks vsnmektgve ppeeeeeerp
      241 vvngndvtvt pesseheeks tgasaevsst qpcpepgytq peeakedmdv tkqtkpeend
      301 dlgplpdnwe maytekgevy fidhntktts wldprlakka kppeeckene lpygwekidd
      361 piygtyyvdh inrrtqfenp vleakrklqq hnmpnaelgt kpmqaqgfre nssstlprpk
      421 fahprpapkr srsvndlsqy qrdpvgtrrl hekplftrda sqlkgtflst tlkksnmgfg
      481 ftiiggdepd eflqvksvip dgpaaqdgkm etgdvivyin evcvlghtha dvvklfqsvp
      541 igqsvnlvlc rgyplpfdpe dpansmvppl avmerppvvv ngrhnyetyl eyisrtsqsv
      601 pdvtdrpphs lhsipadsql dstfpppahd dnvsmassga tqaelmtlti vkgaqgfgft
      661 iadsptgqrv kqildiqgcp glcegdlive inqqnvqnls haevvdilke cpvgsetsli
      721 ihrggffspw ktpkpmmerw enqgspqtsl sapampqnip yppalhrssf pdsteafdpr
      781 kpdpyelyek sraiyesrrp dykeldvhlr rmesgfgfri lggdepgqpi ligaviamgs
      841 adrdgrlhpg delvyvdgip vagkthryvi dlmhnaarng qvnltvrrkv lptepssqkg
      901 ppppgttppr sspstrkman nqgepcpeng rspgsvsthh ssprsdytty ansnhavsss
      961 natppegfts qslqtsdvvi hrkenegfgf viisslnrpe sgstitvphk igriidgspa
     1021 drcaklkvgd rilavngqsi inmphadivk likdaglsvt lriipqeash ytelnspasa
     1081 pssekqspma qqhspmaqqs plaqqspvaq hspvaqpppp qplqlqghen syrsevkarq
     1141 dvkpdirqpp ftdyrqsstd yrqppldyrh ppvmdyqqpp pldyrqppmi dyrqhspdtr
     1201 qyplseyrqp qdfdyftvdl ekgakgfgfs irggreykmd lyvlrlaedg pairngrmrv
     1261 gdqiieinge strdmthara ieliksggrr vrlllkrgtg qvpeydepns wsaptatstg
     1321 lpevalsldd iisplfsshi appsdpshqi speatwdikr ehdvrkpkel svnghkkkrl
     1381 geqrersasp kkvdrskhee aswkgysegk nktidggrpt seskvvghsi mieagarehv
     1441 cagtsdeqfg rlrktegkrg gslskkedhk stntsekksa aasdhvkida ggtktyssnr
     1501 csspgsdvdn sqrdpdgkps efprkghlhs istrttnttv rkatvspgpw kipgsdklps
     1561 vlksgtsams r
//
LOCUS       XP_053920051            1570 aa            linear   VRT 09-MAR-2023
DEFINITION  membrane-associated guanylate kinase, WW and PDZ domain-containing
            protein 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053920051
VERSION     XP_053920051.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064076.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1570
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1570
                     /product="membrane-associated guanylate kinase, WW and PDZ
                     domain-containing protein 2 isoform X3"
                     /calculated_mol_wt=173269
     Region          14..99
                     /region_name="PDZ0_MAGI-1_3-like"
                     /note="PDZ domain 0 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06730"
                     /db_xref="CDD:467212"
     Site            order(27..33,45,48,79,83,86..87)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467212"
     Region          118..>206
                     /region_name="NK"
                     /note="Nucleoside/nucleotide kinase (NK) is a protein
                     superfamily consisting of multiple families of enzymes
                     that share structural similarity and are functionally
                     related to the catalysis of the reversible phosphate group
                     transfer from nucleoside triphosphates...; cl17190"
                     /db_xref="CDD:450170"
     Region          198..259
                     /region_name="MAGI_u1"
                     /note="Unstructured region on MAGI; pfam16663"
                     /db_xref="CDD:435496"
     Region          306..336
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(320,331)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          351..382
                     /region_name="WW"
                     /note="Domain with 2 conserved Trp (W) residues;
                     smart00456"
                     /db_xref="CDD:197736"
     Site            order(366,377)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          468..552
                     /region_name="PDZ1_MAGI-1_3-like"
                     /note="PDZ domain 1 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06731"
                     /db_xref="CDD:467213"
     Site            order(468,489..493,495,516,518,524,526..527,549,551..552)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467213"
     Site            order(479..485,497,500,530,534,537..538)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467213"
     Region          644..725
                     /region_name="PDZ2_MAGI-1_3-like"
                     /note="PDZ domain 2 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06732"
                     /db_xref="CDD:467214"
     Site            order(657..663,672,675,702,706,709..710)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467214"
     Region          803..887
                     /region_name="PDZ3_MAGI-1_3-like"
                     /note="PDZ domain 3 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06733"
                     /db_xref="CDD:467215"
     Site            order(814..820,832,835,865,869,872..873)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467215"
     Region          976..1064
                     /region_name="PDZ4_MAGI-1_3-like"
                     /note="PDZ domain 4 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06734"
                     /db_xref="CDD:467216"
     Site            order(986..992,1011,1014,1044,1048,1051..1052)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467216"
     Region          1214..1296
                     /region_name="PDZ5_MAGI-1_3-like"
                     /note="PDZ domain 5 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06735"
                     /db_xref="CDD:467217"
     Site            order(1225..1231,1243,1246,1276,1280,1283..1284)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467217"
     CDS             1..1570
                     /gene="MAGI2"
                     /coded_by="XM_054064076.1:69..4781"
                     /db_xref="GeneID:104059683"
ORIGIN      
        1 mskglkkksh wtsrvheivi vrnaegqlgf elkggaengq fpylgevkpg kvayeggskl
       61 vpeelllevn etpvagltir dvlavikhck dpirlkcvkq ggivdkdlrh ylnlrfqkgs
      121 vdhelqqiir dnlylrtvpc ttrphkegev pgvdyifitv edfmeleksg allesgtyed
      181 nyygtpkppa epaplllnvt dqilpggtpg aegkrkrnks vsnmektgve ppeeeeeerp
      241 vvngndvtvt pesseheeks tgasaevsst qpcpepgytq peeakedmdv tkqtkpeend
      301 dlgplpdnwe maytekgevy fidhntktts wldprlakka kppeeckene lpygwekidd
      361 piygtyyvdh inrrtqfenp vleakrklqq hnmpnaelgt kpmqaqgfrv enssstlprp
      421 kfahprpapk rsrsvndlsq yqrdpvgtrr lhekplftrd asqlkgtfls ttlkksnmgf
      481 gftiiggdep deflqvksvi pdgpaaqdgk metgdvivyi nevcvlghth advvklfqsv
      541 pigqsvnlvl crgyplpfdp edpansmvpp lavmerppvv vngrhnyety leyisrtsqs
      601 vpdvtdrpph slhsipadsq ldstfpppah ddnvsmassg atqaelmtlt ivkgaqgfgf
      661 tiadsptgqr vkqildiqgc pglcegdliv einqqnvqnl shaevvdilk ecpvgsetsl
      721 iihrggffsp wktpkpmmer wenqgspqts lsapampqni pyppalhrss fpdsteafdp
      781 rkpdpyelye ksraiyespd ykeldvhlrr mesgfgfril ggdepgqpil igaviamgsa
      841 drdgrlhpgd elvyvdgipv agkthryvid lmhnaarngq vnltvrrkvl ptepssqkgp
      901 pppgttpprs spstrkmann qgepcpengr spgsvsthhs sprsdyttya nsnhavsssn
      961 atppegftsq slqtsdvvih rkenegfgfv iisslnrpes gstitvphki griidgspad
     1021 rcaklkvgdr ilavngqsii nmphadivkl ikdaglsvtl riipqeashy telnspasap
     1081 ssekqspmaq qhspmaqqsp laqqspvaqh spvaqppppq plqlqghens yrsevkarqd
     1141 vkpdirqppf tdyrqsstdy rqppldyrhp pvmdyqqppp ldyrqppmid yrqhspdtrq
     1201 yplseyrqpq dfdyftvdle kgakgfgfsi rggreykmdl yvlrlaedgp airngrmrvg
     1261 dqiieinges trdmtharai eliksggrrv rlllkrgtgq vpeydepnsw saptatstgl
     1321 pevalslddi isplfsshia ppsdpshqis peatwdikre hdvrkpkels vnghkkkrlg
     1381 eqrersaspk kvdrskheea swkgysegkn ktidggrpts eskvvghsim ieagarehvc
     1441 agtsdeqfgr lrktegkrgg slskkedhks tntsekksaa asdhvkidag gtktyssnrc
     1501 sspgsdvdns qrdpdgkpse fprkghlhsi strttnttvr katvspgpwk ipgsdklpsv
     1561 lksgtsamsr
//
LOCUS       XP_053920059            1567 aa            linear   VRT 09-MAR-2023
DEFINITION  membrane-associated guanylate kinase, WW and PDZ domain-containing
            protein 2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053920059
VERSION     XP_053920059.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064084.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1567
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1567
                     /product="membrane-associated guanylate kinase, WW and PDZ
                     domain-containing protein 2 isoform X4"
                     /calculated_mol_wt=173022
     Region          14..99
                     /region_name="PDZ0_MAGI-1_3-like"
                     /note="PDZ domain 0 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06730"
                     /db_xref="CDD:467212"
     Site            order(27..33,45,48,79,83,86..87)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467212"
     Region          118..>206
                     /region_name="NK"
                     /note="Nucleoside/nucleotide kinase (NK) is a protein
                     superfamily consisting of multiple families of enzymes
                     that share structural similarity and are functionally
                     related to the catalysis of the reversible phosphate group
                     transfer from nucleoside triphosphates...; cl17190"
                     /db_xref="CDD:450170"
     Region          198..259
                     /region_name="MAGI_u1"
                     /note="Unstructured region on MAGI; pfam16663"
                     /db_xref="CDD:435496"
     Region          305..334
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          351..382
                     /region_name="WW"
                     /note="Domain with 2 conserved Trp (W) residues;
                     smart00456"
                     /db_xref="CDD:197736"
     Site            order(366,377)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          468..552
                     /region_name="PDZ1_MAGI-1_3-like"
                     /note="PDZ domain 1 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06731"
                     /db_xref="CDD:467213"
     Site            order(468,489..493,495,516,518,524,526..527,549,551..552)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467213"
     Site            order(479..485,497,500,530,534,537..538)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467213"
     Region          644..725
                     /region_name="PDZ2_MAGI-1_3-like"
                     /note="PDZ domain 2 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06732"
                     /db_xref="CDD:467214"
     Site            order(657..663,672,675,702,706,709..710)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467214"
     Region          805..889
                     /region_name="PDZ3_MAGI-1_3-like"
                     /note="PDZ domain 3 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06733"
                     /db_xref="CDD:467215"
     Site            order(816..822,834,837,867,871,874..875)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467215"
     Region          978..1066
                     /region_name="PDZ4_MAGI-1_3-like"
                     /note="PDZ domain 4 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06734"
                     /db_xref="CDD:467216"
     Site            order(988..994,1013,1016,1046,1050,1053..1054)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467216"
     Region          1211..1293
                     /region_name="PDZ5_MAGI-1_3-like"
                     /note="PDZ domain 5 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06735"
                     /db_xref="CDD:467217"
     Site            order(1222..1228,1240,1243,1273,1277,1280..1281)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467217"
     CDS             1..1567
                     /gene="MAGI2"
                     /coded_by="XM_054064084.1:69..4772"
                     /db_xref="GeneID:104059683"
ORIGIN      
        1 mskglkkksh wtsrvheivi vrnaegqlgf elkggaengq fpylgevkpg kvayeggskl
       61 vpeelllevn etpvagltir dvlavikhck dpirlkcvkq ggivdkdlrh ylnlrfqkgs
      121 vdhelqqiir dnlylrtvpc ttrphkegev pgvdyifitv edfmeleksg allesgtyed
      181 nyygtpkppa epaplllnvt dqilpggtpg aegkrkrnks vsnmektgve ppeeeeeerp
      241 vvngndvtvt pesseheeks tgasaevsst qpcpepgytq peeakedmdv tkqtkpeend
      301 dlgplpdnwe maytekgevy fidhntktts wldprlakka kppeeckene lpygwekidd
      361 piygtyyvdh inrrtqfenp vleakrklqq hnmpnaelgt kpmqaqgfrv enssstlprp
      421 kfahprpapk rsrsvndlsq yqrdpvgtrr lhekplftrd asqlkgtfls ttlkksnmgf
      481 gftiiggdep deflqvksvi pdgpaaqdgk metgdvivyi nevcvlghth advvklfqsv
      541 pigqsvnlvl crgyplpfdp edpansmvpp lavmerppvv vngrhnyety leyisrtsqs
      601 vpdvtdrpph slhsipadsq ldstfpppah ddnvsmassg atqaelmtlt ivkgaqgfgf
      661 tiadsptgqr vkqildiqgc pglcegdliv einqqnvqnl shaevvdilk ecpvgsetsl
      721 iihrggffsp wktpkpmmer wenqgspqts lsapampqni pyppalhrss fpdsteafdp
      781 rkpdpyelye ksraiyesrr pdykeldvhl rrmesgfgfr ilggdepgqp iligaviamg
      841 sadrdgrlhp gdelvyvdgi pvagkthryv idlmhnaarn gqvnltvrrk vlptepssqk
      901 gppppgttpp rsspstrkma nnqgepcpen grspgsvsth hssprsdytt yansnhavss
      961 snatppegft sqslqtsdvv ihrkenegfg fviisslnrp esgstitvph kigriidgsp
     1021 adrcaklkvg drilavngqs iinmphadiv klikdaglsv tlriipqeel nspasapsse
     1081 kqspmaqqhs pmaqqsplaq qspvaqhspv aqppppqplq lqghensyrs evkarqdvkp
     1141 dirqppftdy rqsstdyrqp pldyrhppvm dyqqpppldy rqppmidyrq hspdtrqypl
     1201 seyrqpqdfd yftvdlekga kgfgfsirgg reykmdlyvl rlaedgpair ngrmrvgdqi
     1261 ieingestrd mtharaieli ksggrrvrll lkrgtgqvpe ydepnswsap tatstglpev
     1321 alslddiisp lfsshiapps dpshqispea twdikrehdv rkpkelsvng hkkkrlgeqr
     1381 ersaspkkvd rskheeaswk gysegknkti dggrptsesk vvghsimiea garehvcagt
     1441 sdeqfgrlrk tegkrggsls kkedhkstnt sekksaaasd hvkidaggtk tyssnrcssp
     1501 gsdvdnsqrd pdgkpsefpr kghlhsistr ttnttvrkat vspgpwkipg sdklpsvlks
     1561 gtsamsr
//
LOCUS       XP_053920066            1543 aa            linear   VRT 09-MAR-2023
DEFINITION  membrane-associated guanylate kinase, WW and PDZ domain-containing
            protein 2 isoform X5 [Cuculus canorus].
ACCESSION   XP_053920066
VERSION     XP_053920066.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064091.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1543
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1543
                     /product="membrane-associated guanylate kinase, WW and PDZ
                     domain-containing protein 2 isoform X5"
                     /calculated_mol_wt=170567
     Region          14..99
                     /region_name="PDZ0_MAGI-1_3-like"
                     /note="PDZ domain 0 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06730"
                     /db_xref="CDD:467212"
     Site            order(27..33,45,48,79,83,86..87)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467212"
     Region          118..>206
                     /region_name="NK"
                     /note="Nucleoside/nucleotide kinase (NK) is a protein
                     superfamily consisting of multiple families of enzymes
                     that share structural similarity and are functionally
                     related to the catalysis of the reversible phosphate group
                     transfer from nucleoside triphosphates...; cl17190"
                     /db_xref="CDD:450170"
     Region          198..259
                     /region_name="MAGI_u1"
                     /note="Unstructured region on MAGI; pfam16663"
                     /db_xref="CDD:435496"
     Region          306..336
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(320,331)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          351..382
                     /region_name="WW"
                     /note="Domain with 2 conserved Trp (W) residues;
                     smart00456"
                     /db_xref="CDD:197736"
     Site            order(366,377)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          468..552
                     /region_name="PDZ1_MAGI-1_3-like"
                     /note="PDZ domain 1 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06731"
                     /db_xref="CDD:467213"
     Site            order(468,489..493,495,516,518,524,526..527,549,551..552)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467213"
     Site            order(479..485,497,500,530,534,537..538)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467213"
     Region          644..725
                     /region_name="PDZ2_MAGI-1_3-like"
                     /note="PDZ domain 2 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06732"
                     /db_xref="CDD:467214"
     Site            order(657..663,672,675,702,706,709..710)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467214"
     Region          805..889
                     /region_name="PDZ3_MAGI-1_3-like"
                     /note="PDZ domain 3 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06733"
                     /db_xref="CDD:467215"
     Site            order(816..822,834,837,867,871,874..875)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467215"
     Region          949..1037
                     /region_name="PDZ4_MAGI-1_3-like"
                     /note="PDZ domain 4 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06734"
                     /db_xref="CDD:467216"
     Site            order(959..965,984,987,1017,1021,1024..1025)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467216"
     Region          1187..1269
                     /region_name="PDZ5_MAGI-1_3-like"
                     /note="PDZ domain 5 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06735"
                     /db_xref="CDD:467217"
     Site            order(1198..1204,1216,1219,1249,1253,1256..1257)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467217"
     CDS             1..1543
                     /gene="MAGI2"
                     /coded_by="XM_054064091.1:69..4700"
                     /db_xref="GeneID:104059683"
ORIGIN      
        1 mskglkkksh wtsrvheivi vrnaegqlgf elkggaengq fpylgevkpg kvayeggskl
       61 vpeelllevn etpvagltir dvlavikhck dpirlkcvkq ggivdkdlrh ylnlrfqkgs
      121 vdhelqqiir dnlylrtvpc ttrphkegev pgvdyifitv edfmeleksg allesgtyed
      181 nyygtpkppa epaplllnvt dqilpggtpg aegkrkrnks vsnmektgve ppeeeeeerp
      241 vvngndvtvt pesseheeks tgasaevsst qpcpepgytq peeakedmdv tkqtkpeend
      301 dlgplpdnwe maytekgevy fidhntktts wldprlakka kppeeckene lpygwekidd
      361 piygtyyvdh inrrtqfenp vleakrklqq hnmpnaelgt kpmqaqgfrv enssstlprp
      421 kfahprpapk rsrsvndlsq yqrdpvgtrr lhekplftrd asqlkgtfls ttlkksnmgf
      481 gftiiggdep deflqvksvi pdgpaaqdgk metgdvivyi nevcvlghth advvklfqsv
      541 pigqsvnlvl crgyplpfdp edpansmvpp lavmerppvv vngrhnyety leyisrtsqs
      601 vpdvtdrpph slhsipadsq ldstfpppah ddnvsmassg atqaelmtlt ivkgaqgfgf
      661 tiadsptgqr vkqildiqgc pglcegdliv einqqnvqnl shaevvdilk ecpvgsetsl
      721 iihrggffsp wktpkpmmer wenqgspqts lsapampqni pyppalhrss fpdsteafdp
      781 rkpdpyelye ksraiyesrr pdykeldvhl rrmesgfgfr ilggdepgqp iligaviamg
      841 sadrdgrlhp gdelvyvdgi pvagkthryv idlmhnaarn gqvnltvrrk vlptgepcpe
      901 ngrspgsvst hhssprsdyt tyansnhavs ssnatppegf tsqslqtsdv vihrkenegf
      961 gfviisslnr pesgstitvp hkigriidgs padrcaklkv gdrilavngq siinmphadi
     1021 vklikdagls vtlriipqea shytelnspa sapssekqsp maqqhspmaq qsplaqqspv
     1081 aqhspvaqpp ppqplqlqgh ensyrsevka rqdvkpdirq ppftdyrqss tdyrqppldy
     1141 rhppvmdyqq pppldyrqpp midyrqhspd trqyplseyr qpqdfdyftv dlekgakgfg
     1201 fsirggreyk mdlyvlrlae dgpairngrm rvgdqiiein gestrdmtha raieliksgg
     1261 rrvrlllkrg tgqvpeydep nswsaptats tglpevalsl ddiisplfss hiappsdpsh
     1321 qispeatwdi krehdvrkpk elsvnghkkk rlgeqrersa spkkvdrskh eeaswkgyse
     1381 gknktidggr ptseskvvgh simieagare hvcagtsdeq fgrlrktegk rggslskked
     1441 hkstntsekk saaasdhvki daggtktyss nrcsspgsdv dnsqrdpdgk psefprkghl
     1501 hsistrttnt tvrkatvspg pwkipgsdkl psvlksgtsa msr
//
LOCUS       XP_053920076            1538 aa            linear   VRT 09-MAR-2023
DEFINITION  membrane-associated guanylate kinase, WW and PDZ domain-containing
            protein 2 isoform X6 [Cuculus canorus].
ACCESSION   XP_053920076
VERSION     XP_053920076.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064101.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1538
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1538
                     /product="membrane-associated guanylate kinase, WW and PDZ
                     domain-containing protein 2 isoform X6"
                     /calculated_mol_wt=170007
     Region          14..99
                     /region_name="PDZ0_MAGI-1_3-like"
                     /note="PDZ domain 0 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06730"
                     /db_xref="CDD:467212"
     Site            order(27..33,45,48,79,83,86..87)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467212"
     Region          118..>206
                     /region_name="NK"
                     /note="Nucleoside/nucleotide kinase (NK) is a protein
                     superfamily consisting of multiple families of enzymes
                     that share structural similarity and are functionally
                     related to the catalysis of the reversible phosphate group
                     transfer from nucleoside triphosphates...; cl17190"
                     /db_xref="CDD:450170"
     Region          198..259
                     /region_name="MAGI_u1"
                     /note="Unstructured region on MAGI; pfam16663"
                     /db_xref="CDD:435496"
     Region          305..334
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          351..382
                     /region_name="WW"
                     /note="Domain with 2 conserved Trp (W) residues;
                     smart00456"
                     /db_xref="CDD:197736"
     Site            order(366,377)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          468..552
                     /region_name="PDZ1_MAGI-1_3-like"
                     /note="PDZ domain 1 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06731"
                     /db_xref="CDD:467213"
     Site            order(468,489..493,495,516,518,524,526..527,549,551..552)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467213"
     Site            order(479..485,497,500,530,534,537..538)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467213"
     Region          644..725
                     /region_name="PDZ2_MAGI-1_3-like"
                     /note="PDZ domain 2 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06732"
                     /db_xref="CDD:467214"
     Site            order(657..663,672,675,702,706,709..710)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467214"
     Region          805..889
                     /region_name="PDZ3_MAGI-1_3-like"
                     /note="PDZ domain 3 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06733"
                     /db_xref="CDD:467215"
     Site            order(816..822,834,837,867,871,874..875)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467215"
     Region          949..1037
                     /region_name="PDZ4_MAGI-1_3-like"
                     /note="PDZ domain 4 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06734"
                     /db_xref="CDD:467216"
     Site            order(959..965,984,987,1017,1021,1024..1025)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467216"
     Region          1182..1264
                     /region_name="PDZ5_MAGI-1_3-like"
                     /note="PDZ domain 5 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06735"
                     /db_xref="CDD:467217"
     Site            order(1193..1199,1211,1214,1244,1248,1251..1252)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467217"
     CDS             1..1538
                     /gene="MAGI2"
                     /coded_by="XM_054064101.1:68..4684"
                     /db_xref="GeneID:104059683"
ORIGIN      
        1 mskglkkksh wtsrvheivi vrnaegqlgf elkggaengq fpylgevkpg kvayeggskl
       61 vpeelllevn etpvagltir dvlavikhck dpirlkcvkq ggivdkdlrh ylnlrfqkgs
      121 vdhelqqiir dnlylrtvpc ttrphkegev pgvdyifitv edfmeleksg allesgtyed
      181 nyygtpkppa epaplllnvt dqilpggtpg aegkrkrnks vsnmektgve ppeeeeeerp
      241 vvngndvtvt pesseheeks tgasaevsst qpcpepgytq peeakedmdv tkqtkpeend
      301 dlgplpdnwe maytekgevy fidhntktts wldprlakka kppeeckene lpygwekidd
      361 piygtyyvdh inrrtqfenp vleakrklqq hnmpnaelgt kpmqaqgfrv enssstlprp
      421 kfahprpapk rsrsvndlsq yqrdpvgtrr lhekplftrd asqlkgtfls ttlkksnmgf
      481 gftiiggdep deflqvksvi pdgpaaqdgk metgdvivyi nevcvlghth advvklfqsv
      541 pigqsvnlvl crgyplpfdp edpansmvpp lavmerppvv vngrhnyety leyisrtsqs
      601 vpdvtdrpph slhsipadsq ldstfpppah ddnvsmassg atqaelmtlt ivkgaqgfgf
      661 tiadsptgqr vkqildiqgc pglcegdliv einqqnvqnl shaevvdilk ecpvgsetsl
      721 iihrggffsp wktpkpmmer wenqgspqts lsapampqni pyppalhrss fpdsteafdp
      781 rkpdpyelye ksraiyesrr pdykeldvhl rrmesgfgfr ilggdepgqp iligaviamg
      841 sadrdgrlhp gdelvyvdgi pvagkthryv idlmhnaarn gqvnltvrrk vlptgepcpe
      901 ngrspgsvst hhssprsdyt tyansnhavs ssnatppegf tsqslqtsdv vihrkenegf
      961 gfviisslnr pesgstitvp hkigriidgs padrcaklkv gdrilavngq siinmphadi
     1021 vklikdagls vtlriipqee lnspasapss ekqspmaqqh spmaqqspla qqspvaqhsp
     1081 vaqppppqpl qlqghensyr sevkarqdvk pdirqppftd yrqsstdyrq ppldyrhppv
     1141 mdyqqpppld yrqppmidyr qhspdtrqyp lseyrqpqdf dyftvdlekg akgfgfsirg
     1201 greykmdlyv lrlaedgpai rngrmrvgdq iieingestr dmtharaiel iksggrrvrl
     1261 llkrgtgqvp eydepnswsa ptatstglpe valslddiis plfsshiapp sdpshqispe
     1321 atwdikrehd vrkpkelsvn ghkkkrlgeq rersaspkkv drskheeasw kgysegknkt
     1381 idggrptses kvvghsimie agarehvcag tsdeqfgrlr ktegkrggsl skkedhkstn
     1441 tsekksaaas dhvkidaggt ktyssnrcss pgsdvdnsqr dpdgkpsefp rkghlhsist
     1501 rttnttvrka tvspgpwkip gsdklpsvlk sgtsamsr
//
LOCUS       XP_053920086            1529 aa            linear   VRT 09-MAR-2023
DEFINITION  membrane-associated guanylate kinase, WW and PDZ domain-containing
            protein 2 isoform X7 [Cuculus canorus].
ACCESSION   XP_053920086
VERSION     XP_053920086.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064111.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1529
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1529
                     /product="membrane-associated guanylate kinase, WW and PDZ
                     domain-containing protein 2 isoform X7"
                     /calculated_mol_wt=168660
     Region          14..99
                     /region_name="PDZ0_MAGI-1_3-like"
                     /note="PDZ domain 0 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06730"
                     /db_xref="CDD:467212"
     Site            order(27..33,45,48,79,83,86..87)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467212"
     Region          118..>206
                     /region_name="NK"
                     /note="Nucleoside/nucleotide kinase (NK) is a protein
                     superfamily consisting of multiple families of enzymes
                     that share structural similarity and are functionally
                     related to the catalysis of the reversible phosphate group
                     transfer from nucleoside triphosphates...; cl17190"
                     /db_xref="CDD:450170"
     Region          198..259
                     /region_name="MAGI_u1"
                     /note="Unstructured region on MAGI; pfam16663"
                     /db_xref="CDD:435496"
     Region          306..336
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(320,331)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          351..382
                     /region_name="WW"
                     /note="Domain with 2 conserved Trp (W) residues;
                     smart00456"
                     /db_xref="CDD:197736"
     Site            order(366,377)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          425..509
                     /region_name="PDZ1_MAGI-1_3-like"
                     /note="PDZ domain 1 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06731"
                     /db_xref="CDD:467213"
     Site            order(425,446..450,452,473,475,481,483..484,506,508..509)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467213"
     Site            order(436..442,454,457,487,491,494..495)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467213"
     Region          601..682
                     /region_name="PDZ2_MAGI-1_3-like"
                     /note="PDZ domain 2 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06732"
                     /db_xref="CDD:467214"
     Site            order(614..620,629,632,659,663,666..667)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467214"
     Region          762..846
                     /region_name="PDZ3_MAGI-1_3-like"
                     /note="PDZ domain 3 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06733"
                     /db_xref="CDD:467215"
     Site            order(773..779,791,794,824,828,831..832)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467215"
     Region          935..1023
                     /region_name="PDZ4_MAGI-1_3-like"
                     /note="PDZ domain 4 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06734"
                     /db_xref="CDD:467216"
     Site            order(945..951,970,973,1003,1007,1010..1011)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467216"
     Region          1173..1255
                     /region_name="PDZ5_MAGI-1_3-like"
                     /note="PDZ domain 5 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06735"
                     /db_xref="CDD:467217"
     Site            order(1184..1190,1202,1205,1235,1239,1242..1243)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467217"
     CDS             1..1529
                     /gene="MAGI2"
                     /coded_by="XM_054064111.1:69..4658"
                     /db_xref="GeneID:104059683"
ORIGIN      
        1 mskglkkksh wtsrvheivi vrnaegqlgf elkggaengq fpylgevkpg kvayeggskl
       61 vpeelllevn etpvagltir dvlavikhck dpirlkcvkq ggivdkdlrh ylnlrfqkgs
      121 vdhelqqiir dnlylrtvpc ttrphkegev pgvdyifitv edfmeleksg allesgtyed
      181 nyygtpkppa epaplllnvt dqilpggtpg aegkrkrnks vsnmektgve ppeeeeeerp
      241 vvngndvtvt pesseheeks tgasaevsst qpcpepgytq peeakedmdv tkqtkpeend
      301 dlgplpdnwe maytekgevy fidhntktts wldprlakka kppeeckene lpygwekidd
      361 piygtyyvdh inrrtqfenp vleakrklqq hnmpnaelgt kpmqaqgfre kplftrdasq
      421 lkgtflsttl kksnmgfgft iiggdepdef lqvksvipdg paaqdgkmet gdvivyinev
      481 cvlghthadv vklfqsvpig qsvnlvlcrg yplpfdpedp ansmvpplav merppvvvng
      541 rhnyetyley isrtsqsvpd vtdrpphslh sipadsqlds tfpppahddn vsmassgatq
      601 aelmtltivk gaqgfgftia dsptgqrvkq ildiqgcpgl cegdlivein qqnvqnlsha
      661 evvdilkecp vgsetsliih rggffspwkt pkpmmerwen qgspqtslsa pampqnipyp
      721 palhrssfpd steafdprkp dpyelyeksr aiyesrrpdy keldvhlrrm esgfgfrilg
      781 gdepgqpili gaviamgsad rdgrlhpgde lvyvdgipva gkthryvidl mhnaarngqv
      841 nltvrrkvlp tepssqkgpp ppgttpprss pstrkmannq gepcpengrs pgsvsthhss
      901 prsdyttyan snhavsssna tppegftsqs lqtsdvvihr kenegfgfvi isslnrpesg
      961 stitvphkig riidgspadr caklkvgdri lavngqsiin mphadivkli kdaglsvtlr
     1021 iipqeashyt elnspasaps sekqspmaqq hspmaqqspl aqqspvaqhs pvaqppppqp
     1081 lqlqghensy rsevkarqdv kpdirqppft dyrqsstdyr qppldyrhpp vmdyqqpppl
     1141 dyrqppmidy rqhspdtrqy plseyrqpqd fdyftvdlek gakgfgfsir ggreykmdly
     1201 vlrlaedgpa irngrmrvgd qiieingest rdmtharaie liksggrrvr lllkrgtgqv
     1261 peydepnsws aptatstglp evalslddii splfsshiap psdpshqisp eatwdikreh
     1321 dvrkpkelsv nghkkkrlge qrersaspkk vdrskheeas wkgysegknk tidggrptse
     1381 skvvghsimi eagarehvca gtsdeqfgrl rktegkrggs lskkedhkst ntsekksaaa
     1441 sdhvkidagg tktyssnrcs spgsdvdnsq rdpdgkpsef prkghlhsis trttnttvrk
     1501 atvspgpwki pgsdklpsvl ksgtsamsr
//
LOCUS       XP_053920094            1495 aa            linear   VRT 09-MAR-2023
DEFINITION  membrane-associated guanylate kinase, WW and PDZ domain-containing
            protein 2 isoform X8 [Cuculus canorus].
ACCESSION   XP_053920094
VERSION     XP_053920094.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064119.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1495
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1495
                     /product="membrane-associated guanylate kinase, WW and PDZ
                     domain-containing protein 2 isoform X8"
                     /calculated_mol_wt=165086
     Region          14..99
                     /region_name="PDZ0_MAGI-1_3-like"
                     /note="PDZ domain 0 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06730"
                     /db_xref="CDD:467212"
     Site            order(27..33,45,48,79,83,86..87)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467212"
     Region          118..>206
                     /region_name="NK"
                     /note="Nucleoside/nucleotide kinase (NK) is a protein
                     superfamily consisting of multiple families of enzymes
                     that share structural similarity and are functionally
                     related to the catalysis of the reversible phosphate group
                     transfer from nucleoside triphosphates...; cl17190"
                     /db_xref="CDD:450170"
     Region          198..259
                     /region_name="MAGI_u1"
                     /note="Unstructured region on MAGI; pfam16663"
                     /db_xref="CDD:435496"
     Region          305..334
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          351..382
                     /region_name="WW"
                     /note="Domain with 2 conserved Trp (W) residues;
                     smart00456"
                     /db_xref="CDD:197736"
     Site            order(366,377)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          425..509
                     /region_name="PDZ1_MAGI-1_3-like"
                     /note="PDZ domain 1 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06731"
                     /db_xref="CDD:467213"
     Site            order(425,446..450,452,473,475,481,483..484,506,508..509)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467213"
     Site            order(436..442,454,457,487,491,494..495)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467213"
     Region          601..682
                     /region_name="PDZ2_MAGI-1_3-like"
                     /note="PDZ domain 2 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06732"
                     /db_xref="CDD:467214"
     Site            order(614..620,629,632,659,663,666..667)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467214"
     Region          762..846
                     /region_name="PDZ3_MAGI-1_3-like"
                     /note="PDZ domain 3 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06733"
                     /db_xref="CDD:467215"
     Site            order(773..779,791,794,824,828,831..832)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467215"
     Region          906..994
                     /region_name="PDZ4_MAGI-1_3-like"
                     /note="PDZ domain 4 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06734"
                     /db_xref="CDD:467216"
     Site            order(916..922,941,944,974,978,981..982)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467216"
     Region          1139..1221
                     /region_name="PDZ5_MAGI-1_3-like"
                     /note="PDZ domain 5 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06735"
                     /db_xref="CDD:467217"
     Site            order(1150..1156,1168,1171,1201,1205,1208..1209)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467217"
     CDS             1..1495
                     /gene="MAGI2"
                     /coded_by="XM_054064119.1:68..4555"
                     /db_xref="GeneID:104059683"
ORIGIN      
        1 mskglkkksh wtsrvheivi vrnaegqlgf elkggaengq fpylgevkpg kvayeggskl
       61 vpeelllevn etpvagltir dvlavikhck dpirlkcvkq ggivdkdlrh ylnlrfqkgs
      121 vdhelqqiir dnlylrtvpc ttrphkegev pgvdyifitv edfmeleksg allesgtyed
      181 nyygtpkppa epaplllnvt dqilpggtpg aegkrkrnks vsnmektgve ppeeeeeerp
      241 vvngndvtvt pesseheeks tgasaevsst qpcpepgytq peeakedmdv tkqtkpeend
      301 dlgplpdnwe maytekgevy fidhntktts wldprlakka kppeeckene lpygwekidd
      361 piygtyyvdh inrrtqfenp vleakrklqq hnmpnaelgt kpmqaqgfre kplftrdasq
      421 lkgtflsttl kksnmgfgft iiggdepdef lqvksvipdg paaqdgkmet gdvivyinev
      481 cvlghthadv vklfqsvpig qsvnlvlcrg yplpfdpedp ansmvpplav merppvvvng
      541 rhnyetyley isrtsqsvpd vtdrpphslh sipadsqlds tfpppahddn vsmassgatq
      601 aelmtltivk gaqgfgftia dsptgqrvkq ildiqgcpgl cegdlivein qqnvqnlsha
      661 evvdilkecp vgsetsliih rggffspwkt pkpmmerwen qgspqtslsa pampqnipyp
      721 palhrssfpd steafdprkp dpyelyeksr aiyesrrpdy keldvhlrrm esgfgfrilg
      781 gdepgqpili gaviamgsad rdgrlhpgde lvyvdgipva gkthryvidl mhnaarngqv
      841 nltvrrkvlp tgepcpengr spgsvsthhs sprsdyttya nsnhavsssn atppegftsq
      901 slqtsdvvih rkenegfgfv iisslnrpes gstitvphki griidgspad rcaklkvgdr
      961 ilavngqsii nmphadivkl ikdaglsvtl riipqeelns pasapssekq spmaqqhspm
     1021 aqqsplaqqs pvaqhspvaq ppppqplqlq ghensyrsev karqdvkpdi rqppftdyrq
     1081 sstdyrqppl dyrhppvmdy qqpppldyrq ppmidyrqhs pdtrqyplse yrqpqdfdyf
     1141 tvdlekgakg fgfsirggre ykmdlyvlrl aedgpairng rmrvgdqiie ingestrdmt
     1201 haraieliks ggrrvrlllk rgtgqvpeyd epnswsapta tstglpeval slddiisplf
     1261 sshiappsdp shqispeatw dikrehdvrk pkelsvnghk kkrlgeqrer saspkkvdrs
     1321 kheeaswkgy segknktidg grptseskvv ghsimieaga rehvcagtsd eqfgrlrkte
     1381 gkrggslskk edhkstntse kksaaasdhv kidaggtkty ssnrcsspgs dvdnsqrdpd
     1441 gkpsefprkg hlhsistrtt nttvrkatvs pgpwkipgsd klpsvlksgt samsr
//
LOCUS       XP_053920102            1409 aa            linear   VRT 09-MAR-2023
DEFINITION  membrane-associated guanylate kinase, WW and PDZ domain-containing
            protein 2 isoform X9 [Cuculus canorus].
ACCESSION   XP_053920102
VERSION     XP_053920102.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064127.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1409
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1409
                     /product="membrane-associated guanylate kinase, WW and PDZ
                     domain-containing protein 2 isoform X9"
                     /calculated_mol_wt=155255
     Region          <1..>43
                     /region_name="NK"
                     /note="Nucleoside/nucleotide kinase (NK) is a protein
                     superfamily consisting of multiple families of enzymes
                     that share structural similarity and are functionally
                     related to the catalysis of the reversible phosphate group
                     transfer from nucleoside triphosphates...; cl17190"
                     /db_xref="CDD:450170"
     Region          35..96
                     /region_name="MAGI_u1"
                     /note="Unstructured region on MAGI; pfam16663"
                     /db_xref="CDD:435496"
     Region          142..171
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          188..219
                     /region_name="WW"
                     /note="Domain with 2 conserved Trp (W) residues;
                     smart00456"
                     /db_xref="CDD:197736"
     Site            order(203,214)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          305..389
                     /region_name="PDZ1_MAGI-1_3-like"
                     /note="PDZ domain 1 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06731"
                     /db_xref="CDD:467213"
     Site            order(305,326..330,332,353,355,361,363..364,386,388..389)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467213"
     Site            order(316..322,334,337,367,371,374..375)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467213"
     Region          481..562
                     /region_name="PDZ2_MAGI-1_3-like"
                     /note="PDZ domain 2 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06732"
                     /db_xref="CDD:467214"
     Site            order(494..500,509,512,539,543,546..547)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467214"
     Region          642..726
                     /region_name="PDZ3_MAGI-1_3-like"
                     /note="PDZ domain 3 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06733"
                     /db_xref="CDD:467215"
     Site            order(653..659,671,674,704,708,711..712)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467215"
     Region          815..903
                     /region_name="PDZ4_MAGI-1_3-like"
                     /note="PDZ domain 4 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06734"
                     /db_xref="CDD:467216"
     Site            order(825..831,850,853,883,887,890..891)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467216"
     Region          1053..1135
                     /region_name="PDZ5_MAGI-1_3-like"
                     /note="PDZ domain 5 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06735"
                     /db_xref="CDD:467217"
     Site            order(1064..1070,1082,1085,1115,1119,1122..1123)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467217"
     CDS             1..1409
                     /gene="MAGI2"
                     /coded_by="XM_054064127.1:426..4655"
                     /db_xref="GeneID:104059683"
ORIGIN      
        1 meleksgall esgtyednyy gtpkppaepa plllnvtdqi lpggtpgaeg krkrnksvsn
       61 mektgveppe eeeeerpvvn gndvtvtpes seheekstga saevsstqpc pepgytqpee
      121 akedmdvtkq tkpeenddlg plpdnwemay tekgevyfid hntkttswld prlakkakpp
      181 eeckenelpy gwekiddpiy gtyyvdhinr rtqfenpvle akrklqqhnm pnaelgtkpm
      241 qaqgfrvens sstlprpkfa hprpapkrsr svndlsqyqr dpvgtrrlhe kplftrdasq
      301 lkgtflsttl kksnmgfgft iiggdepdef lqvksvipdg paaqdgkmet gdvivyinev
      361 cvlghthadv vklfqsvpig qsvnlvlcrg yplpfdpedp ansmvpplav merppvvvng
      421 rhnyetyley isrtsqsvpd vtdrpphslh sipadsqlds tfpppahddn vsmassgatq
      481 aelmtltivk gaqgfgftia dsptgqrvkq ildiqgcpgl cegdlivein qqnvqnlsha
      541 evvdilkecp vgsetsliih rggffspwkt pkpmmerwen qgspqtslsa pampqnipyp
      601 palhrssfpd steafdprkp dpyelyeksr aiyesrrpdy keldvhlrrm esgfgfrilg
      661 gdepgqpili gaviamgsad rdgrlhpgde lvyvdgipva gkthryvidl mhnaarngqv
      721 nltvrrkvlp tepssqkgpp ppgttpprss pstrkmannq gepcpengrs pgsvsthhss
      781 prsdyttyan snhavsssna tppegftsqs lqtsdvvihr kenegfgfvi isslnrpesg
      841 stitvphkig riidgspadr caklkvgdri lavngqsiin mphadivkli kdaglsvtlr
      901 iipqeashyt elnspasaps sekqspmaqq hspmaqqspl aqqspvaqhs pvaqppppqp
      961 lqlqghensy rsevkarqdv kpdirqppft dyrqsstdyr qppldyrhpp vmdyqqpppl
     1021 dyrqppmidy rqhspdtrqy plseyrqpqd fdyftvdlek gakgfgfsir ggreykmdly
     1081 vlrlaedgpa irngrmrvgd qiieingest rdmtharaie liksggrrvr lllkrgtgqv
     1141 peydepnsws aptatstglp evalslddii splfsshiap psdpshqisp eatwdikreh
     1201 dvrkpkelsv nghkkkrlge qrersaspkk vdrskheeas wkgysegknk tidggrptse
     1261 skvvghsimi eagarehvca gtsdeqfgrl rktegkrggs lskkedhkst ntsekksaaa
     1321 sdhvkidagg tktyssnrcs spgsdvdnsq rdpdgkpsef prkghlhsis trttnttvrk
     1381 atvspgpwki pgsdklpsvl ksgtsamsr
//
LOCUS       XP_053920107            1409 aa            linear   VRT 09-MAR-2023
DEFINITION  membrane-associated guanylate kinase, WW and PDZ domain-containing
            protein 2 isoform X9 [Cuculus canorus].
ACCESSION   XP_053920107
VERSION     XP_053920107.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064132.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1409
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1409
                     /product="membrane-associated guanylate kinase, WW and PDZ
                     domain-containing protein 2 isoform X9"
                     /calculated_mol_wt=155255
     Region          <1..>43
                     /region_name="NK"
                     /note="Nucleoside/nucleotide kinase (NK) is a protein
                     superfamily consisting of multiple families of enzymes
                     that share structural similarity and are functionally
                     related to the catalysis of the reversible phosphate group
                     transfer from nucleoside triphosphates...; cl17190"
                     /db_xref="CDD:450170"
     Region          35..96
                     /region_name="MAGI_u1"
                     /note="Unstructured region on MAGI; pfam16663"
                     /db_xref="CDD:435496"
     Region          142..171
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          188..219
                     /region_name="WW"
                     /note="Domain with 2 conserved Trp (W) residues;
                     smart00456"
                     /db_xref="CDD:197736"
     Site            order(203,214)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          305..389
                     /region_name="PDZ1_MAGI-1_3-like"
                     /note="PDZ domain 1 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06731"
                     /db_xref="CDD:467213"
     Site            order(305,326..330,332,353,355,361,363..364,386,388..389)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467213"
     Site            order(316..322,334,337,367,371,374..375)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467213"
     Region          481..562
                     /region_name="PDZ2_MAGI-1_3-like"
                     /note="PDZ domain 2 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06732"
                     /db_xref="CDD:467214"
     Site            order(494..500,509,512,539,543,546..547)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467214"
     Region          642..726
                     /region_name="PDZ3_MAGI-1_3-like"
                     /note="PDZ domain 3 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06733"
                     /db_xref="CDD:467215"
     Site            order(653..659,671,674,704,708,711..712)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467215"
     Region          815..903
                     /region_name="PDZ4_MAGI-1_3-like"
                     /note="PDZ domain 4 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06734"
                     /db_xref="CDD:467216"
     Site            order(825..831,850,853,883,887,890..891)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467216"
     Region          1053..1135
                     /region_name="PDZ5_MAGI-1_3-like"
                     /note="PDZ domain 5 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06735"
                     /db_xref="CDD:467217"
     Site            order(1064..1070,1082,1085,1115,1119,1122..1123)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467217"
     CDS             1..1409
                     /gene="MAGI2"
                     /coded_by="XM_054064132.1:310..4539"
                     /db_xref="GeneID:104059683"
ORIGIN      
        1 meleksgall esgtyednyy gtpkppaepa plllnvtdqi lpggtpgaeg krkrnksvsn
       61 mektgveppe eeeeerpvvn gndvtvtpes seheekstga saevsstqpc pepgytqpee
      121 akedmdvtkq tkpeenddlg plpdnwemay tekgevyfid hntkttswld prlakkakpp
      181 eeckenelpy gwekiddpiy gtyyvdhinr rtqfenpvle akrklqqhnm pnaelgtkpm
      241 qaqgfrvens sstlprpkfa hprpapkrsr svndlsqyqr dpvgtrrlhe kplftrdasq
      301 lkgtflsttl kksnmgfgft iiggdepdef lqvksvipdg paaqdgkmet gdvivyinev
      361 cvlghthadv vklfqsvpig qsvnlvlcrg yplpfdpedp ansmvpplav merppvvvng
      421 rhnyetyley isrtsqsvpd vtdrpphslh sipadsqlds tfpppahddn vsmassgatq
      481 aelmtltivk gaqgfgftia dsptgqrvkq ildiqgcpgl cegdlivein qqnvqnlsha
      541 evvdilkecp vgsetsliih rggffspwkt pkpmmerwen qgspqtslsa pampqnipyp
      601 palhrssfpd steafdprkp dpyelyeksr aiyesrrpdy keldvhlrrm esgfgfrilg
      661 gdepgqpili gaviamgsad rdgrlhpgde lvyvdgipva gkthryvidl mhnaarngqv
      721 nltvrrkvlp tepssqkgpp ppgttpprss pstrkmannq gepcpengrs pgsvsthhss
      781 prsdyttyan snhavsssna tppegftsqs lqtsdvvihr kenegfgfvi isslnrpesg
      841 stitvphkig riidgspadr caklkvgdri lavngqsiin mphadivkli kdaglsvtlr
      901 iipqeashyt elnspasaps sekqspmaqq hspmaqqspl aqqspvaqhs pvaqppppqp
      961 lqlqghensy rsevkarqdv kpdirqppft dyrqsstdyr qppldyrhpp vmdyqqpppl
     1021 dyrqppmidy rqhspdtrqy plseyrqpqd fdyftvdlek gakgfgfsir ggreykmdly
     1081 vlrlaedgpa irngrmrvgd qiieingest rdmtharaie liksggrrvr lllkrgtgqv
     1141 peydepnsws aptatstglp evalslddii splfsshiap psdpshqisp eatwdikreh
     1201 dvrkpkelsv nghkkkrlge qrersaspkk vdrskheeas wkgysegknk tidggrptse
     1261 skvvghsimi eagarehvca gtsdeqfgrl rktegkrggs lskkedhkst ntsekksaaa
     1321 sdhvkidagg tktyssnrcs spgsdvdnsq rdpdgkpsef prkghlhsis trttnttvrk
     1381 atvspgpwki pgsdklpsvl ksgtsamsr
//
LOCUS       XP_053920114            1409 aa            linear   VRT 09-MAR-2023
DEFINITION  membrane-associated guanylate kinase, WW and PDZ domain-containing
            protein 2 isoform X9 [Cuculus canorus].
ACCESSION   XP_053920114
VERSION     XP_053920114.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064139.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1409
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1409
                     /product="membrane-associated guanylate kinase, WW and PDZ
                     domain-containing protein 2 isoform X9"
                     /calculated_mol_wt=155255
     Region          <1..>43
                     /region_name="NK"
                     /note="Nucleoside/nucleotide kinase (NK) is a protein
                     superfamily consisting of multiple families of enzymes
                     that share structural similarity and are functionally
                     related to the catalysis of the reversible phosphate group
                     transfer from nucleoside triphosphates...; cl17190"
                     /db_xref="CDD:450170"
     Region          35..96
                     /region_name="MAGI_u1"
                     /note="Unstructured region on MAGI; pfam16663"
                     /db_xref="CDD:435496"
     Region          142..171
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          188..219
                     /region_name="WW"
                     /note="Domain with 2 conserved Trp (W) residues;
                     smart00456"
                     /db_xref="CDD:197736"
     Site            order(203,214)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          305..389
                     /region_name="PDZ1_MAGI-1_3-like"
                     /note="PDZ domain 1 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06731"
                     /db_xref="CDD:467213"
     Site            order(305,326..330,332,353,355,361,363..364,386,388..389)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467213"
     Site            order(316..322,334,337,367,371,374..375)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467213"
     Region          481..562
                     /region_name="PDZ2_MAGI-1_3-like"
                     /note="PDZ domain 2 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06732"
                     /db_xref="CDD:467214"
     Site            order(494..500,509,512,539,543,546..547)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467214"
     Region          642..726
                     /region_name="PDZ3_MAGI-1_3-like"
                     /note="PDZ domain 3 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06733"
                     /db_xref="CDD:467215"
     Site            order(653..659,671,674,704,708,711..712)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467215"
     Region          815..903
                     /region_name="PDZ4_MAGI-1_3-like"
                     /note="PDZ domain 4 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06734"
                     /db_xref="CDD:467216"
     Site            order(825..831,850,853,883,887,890..891)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467216"
     Region          1053..1135
                     /region_name="PDZ5_MAGI-1_3-like"
                     /note="PDZ domain 5 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06735"
                     /db_xref="CDD:467217"
     Site            order(1064..1070,1082,1085,1115,1119,1122..1123)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467217"
     CDS             1..1409
                     /gene="MAGI2"
                     /coded_by="XM_054064139.1:205..4434"
                     /db_xref="GeneID:104059683"
ORIGIN      
        1 meleksgall esgtyednyy gtpkppaepa plllnvtdqi lpggtpgaeg krkrnksvsn
       61 mektgveppe eeeeerpvvn gndvtvtpes seheekstga saevsstqpc pepgytqpee
      121 akedmdvtkq tkpeenddlg plpdnwemay tekgevyfid hntkttswld prlakkakpp
      181 eeckenelpy gwekiddpiy gtyyvdhinr rtqfenpvle akrklqqhnm pnaelgtkpm
      241 qaqgfrvens sstlprpkfa hprpapkrsr svndlsqyqr dpvgtrrlhe kplftrdasq
      301 lkgtflsttl kksnmgfgft iiggdepdef lqvksvipdg paaqdgkmet gdvivyinev
      361 cvlghthadv vklfqsvpig qsvnlvlcrg yplpfdpedp ansmvpplav merppvvvng
      421 rhnyetyley isrtsqsvpd vtdrpphslh sipadsqlds tfpppahddn vsmassgatq
      481 aelmtltivk gaqgfgftia dsptgqrvkq ildiqgcpgl cegdlivein qqnvqnlsha
      541 evvdilkecp vgsetsliih rggffspwkt pkpmmerwen qgspqtslsa pampqnipyp
      601 palhrssfpd steafdprkp dpyelyeksr aiyesrrpdy keldvhlrrm esgfgfrilg
      661 gdepgqpili gaviamgsad rdgrlhpgde lvyvdgipva gkthryvidl mhnaarngqv
      721 nltvrrkvlp tepssqkgpp ppgttpprss pstrkmannq gepcpengrs pgsvsthhss
      781 prsdyttyan snhavsssna tppegftsqs lqtsdvvihr kenegfgfvi isslnrpesg
      841 stitvphkig riidgspadr caklkvgdri lavngqsiin mphadivkli kdaglsvtlr
      901 iipqeashyt elnspasaps sekqspmaqq hspmaqqspl aqqspvaqhs pvaqppppqp
      961 lqlqghensy rsevkarqdv kpdirqppft dyrqsstdyr qppldyrhpp vmdyqqpppl
     1021 dyrqppmidy rqhspdtrqy plseyrqpqd fdyftvdlek gakgfgfsir ggreykmdly
     1081 vlrlaedgpa irngrmrvgd qiieingest rdmtharaie liksggrrvr lllkrgtgqv
     1141 peydepnsws aptatstglp evalslddii splfsshiap psdpshqisp eatwdikreh
     1201 dvrkpkelsv nghkkkrlge qrersaspkk vdrskheeas wkgysegknk tidggrptse
     1261 skvvghsimi eagarehvca gtsdeqfgrl rktegkrggs lskkedhkst ntsekksaaa
     1321 sdhvkidagg tktyssnrcs spgsdvdnsq rdpdgkpsef prkghlhsis trttnttvrk
     1381 atvspgpwki pgsdklpsvl ksgtsamsr
//
LOCUS       XP_053920123            1409 aa            linear   VRT 09-MAR-2023
DEFINITION  membrane-associated guanylate kinase, WW and PDZ domain-containing
            protein 2 isoform X9 [Cuculus canorus].
ACCESSION   XP_053920123
VERSION     XP_053920123.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064148.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1409
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1409
                     /product="membrane-associated guanylate kinase, WW and PDZ
                     domain-containing protein 2 isoform X9"
                     /calculated_mol_wt=155255
     Region          <1..>43
                     /region_name="NK"
                     /note="Nucleoside/nucleotide kinase (NK) is a protein
                     superfamily consisting of multiple families of enzymes
                     that share structural similarity and are functionally
                     related to the catalysis of the reversible phosphate group
                     transfer from nucleoside triphosphates...; cl17190"
                     /db_xref="CDD:450170"
     Region          35..96
                     /region_name="MAGI_u1"
                     /note="Unstructured region on MAGI; pfam16663"
                     /db_xref="CDD:435496"
     Region          142..171
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          188..219
                     /region_name="WW"
                     /note="Domain with 2 conserved Trp (W) residues;
                     smart00456"
                     /db_xref="CDD:197736"
     Site            order(203,214)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          305..389
                     /region_name="PDZ1_MAGI-1_3-like"
                     /note="PDZ domain 1 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06731"
                     /db_xref="CDD:467213"
     Site            order(305,326..330,332,353,355,361,363..364,386,388..389)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467213"
     Site            order(316..322,334,337,367,371,374..375)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467213"
     Region          481..562
                     /region_name="PDZ2_MAGI-1_3-like"
                     /note="PDZ domain 2 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06732"
                     /db_xref="CDD:467214"
     Site            order(494..500,509,512,539,543,546..547)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467214"
     Region          642..726
                     /region_name="PDZ3_MAGI-1_3-like"
                     /note="PDZ domain 3 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06733"
                     /db_xref="CDD:467215"
     Site            order(653..659,671,674,704,708,711..712)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467215"
     Region          815..903
                     /region_name="PDZ4_MAGI-1_3-like"
                     /note="PDZ domain 4 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06734"
                     /db_xref="CDD:467216"
     Site            order(825..831,850,853,883,887,890..891)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467216"
     Region          1053..1135
                     /region_name="PDZ5_MAGI-1_3-like"
                     /note="PDZ domain 5 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06735"
                     /db_xref="CDD:467217"
     Site            order(1064..1070,1082,1085,1115,1119,1122..1123)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467217"
     CDS             1..1409
                     /gene="MAGI2"
                     /coded_by="XM_054064148.1:181..4410"
                     /db_xref="GeneID:104059683"
ORIGIN      
        1 meleksgall esgtyednyy gtpkppaepa plllnvtdqi lpggtpgaeg krkrnksvsn
       61 mektgveppe eeeeerpvvn gndvtvtpes seheekstga saevsstqpc pepgytqpee
      121 akedmdvtkq tkpeenddlg plpdnwemay tekgevyfid hntkttswld prlakkakpp
      181 eeckenelpy gwekiddpiy gtyyvdhinr rtqfenpvle akrklqqhnm pnaelgtkpm
      241 qaqgfrvens sstlprpkfa hprpapkrsr svndlsqyqr dpvgtrrlhe kplftrdasq
      301 lkgtflsttl kksnmgfgft iiggdepdef lqvksvipdg paaqdgkmet gdvivyinev
      361 cvlghthadv vklfqsvpig qsvnlvlcrg yplpfdpedp ansmvpplav merppvvvng
      421 rhnyetyley isrtsqsvpd vtdrpphslh sipadsqlds tfpppahddn vsmassgatq
      481 aelmtltivk gaqgfgftia dsptgqrvkq ildiqgcpgl cegdlivein qqnvqnlsha
      541 evvdilkecp vgsetsliih rggffspwkt pkpmmerwen qgspqtslsa pampqnipyp
      601 palhrssfpd steafdprkp dpyelyeksr aiyesrrpdy keldvhlrrm esgfgfrilg
      661 gdepgqpili gaviamgsad rdgrlhpgde lvyvdgipva gkthryvidl mhnaarngqv
      721 nltvrrkvlp tepssqkgpp ppgttpprss pstrkmannq gepcpengrs pgsvsthhss
      781 prsdyttyan snhavsssna tppegftsqs lqtsdvvihr kenegfgfvi isslnrpesg
      841 stitvphkig riidgspadr caklkvgdri lavngqsiin mphadivkli kdaglsvtlr
      901 iipqeashyt elnspasaps sekqspmaqq hspmaqqspl aqqspvaqhs pvaqppppqp
      961 lqlqghensy rsevkarqdv kpdirqppft dyrqsstdyr qppldyrhpp vmdyqqpppl
     1021 dyrqppmidy rqhspdtrqy plseyrqpqd fdyftvdlek gakgfgfsir ggreykmdly
     1081 vlrlaedgpa irngrmrvgd qiieingest rdmtharaie liksggrrvr lllkrgtgqv
     1141 peydepnsws aptatstglp evalslddii splfsshiap psdpshqisp eatwdikreh
     1201 dvrkpkelsv nghkkkrlge qrersaspkk vdrskheeas wkgysegknk tidggrptse
     1261 skvvghsimi eagarehvca gtsdeqfgrl rktegkrggs lskkedhkst ntsekksaaa
     1321 sdhvkidagg tktyssnrcs spgsdvdnsq rdpdgkpsef prkghlhsis trttnttvrk
     1381 atvspgpwki pgsdklpsvl ksgtsamsr
//
LOCUS       XP_053920130            1360 aa            linear   VRT 09-MAR-2023
DEFINITION  membrane-associated guanylate kinase, WW and PDZ domain-containing
            protein 2 isoform X10 [Cuculus canorus].
ACCESSION   XP_053920130
VERSION     XP_053920130.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064155.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1360
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1360
                     /product="membrane-associated guanylate kinase, WW and PDZ
                     domain-containing protein 2 isoform X10"
                     /calculated_mol_wt=150727
     Region          14..99
                     /region_name="PDZ0_MAGI-1_3-like"
                     /note="PDZ domain 0 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06730"
                     /db_xref="CDD:467212"
     Site            order(27..33,45,48,79,83,86..87)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467212"
     Region          118..>206
                     /region_name="NK"
                     /note="Nucleoside/nucleotide kinase (NK) is a protein
                     superfamily consisting of multiple families of enzymes
                     that share structural similarity and are functionally
                     related to the catalysis of the reversible phosphate group
                     transfer from nucleoside triphosphates...; cl17190"
                     /db_xref="CDD:450170"
     Region          198..259
                     /region_name="MAGI_u1"
                     /note="Unstructured region on MAGI; pfam16663"
                     /db_xref="CDD:435496"
     Region          305..334
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          351..382
                     /region_name="WW"
                     /note="Domain with 2 conserved Trp (W) residues;
                     smart00456"
                     /db_xref="CDD:197736"
     Site            order(366,377)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          468..>514
                     /region_name="PDZ_canonical"
                     /note="canonical PDZ domain; cl49608"
                     /db_xref="CDD:483948"
     Region          593..677
                     /region_name="PDZ3_MAGI-1_3-like"
                     /note="PDZ domain 3 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06733"
                     /db_xref="CDD:467215"
     Site            order(604..610,622,625,655,659,662..663)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467215"
     Region          766..854
                     /region_name="PDZ4_MAGI-1_3-like"
                     /note="PDZ domain 4 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06734"
                     /db_xref="CDD:467216"
     Site            order(776..782,801,804,834,838,841..842)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467216"
     Region          1004..1086
                     /region_name="PDZ5_MAGI-1_3-like"
                     /note="PDZ domain 5 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06735"
                     /db_xref="CDD:467217"
     Site            order(1015..1021,1033,1036,1066,1070,1073..1074)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467217"
     CDS             1..1360
                     /gene="MAGI2"
                     /coded_by="XM_054064155.1:69..4151"
                     /db_xref="GeneID:104059683"
ORIGIN      
        1 mskglkkksh wtsrvheivi vrnaegqlgf elkggaengq fpylgevkpg kvayeggskl
       61 vpeelllevn etpvagltir dvlavikhck dpirlkcvkq ggivdkdlrh ylnlrfqkgs
      121 vdhelqqiir dnlylrtvpc ttrphkegev pgvdyifitv edfmeleksg allesgtyed
      181 nyygtpkppa epaplllnvt dqilpggtpg aegkrkrnks vsnmektgve ppeeeeeerp
      241 vvngndvtvt pesseheeks tgasaevsst qpcpepgytq peeakedmdv tkqtkpeend
      301 dlgplpdnwe maytekgevy fidhntktts wldprlakka kppeeckene lpygwekidd
      361 piygtyyvdh inrrtqfenp vleakrklqq hnmpnaelgt kpmqaqgfrv enssstlprp
      421 kfahprpapk rsrsvndlsq yqrdpvgtrr lhekplftrd asqlkgtfls ttlkksnmgf
      481 gftiiggdep deflqvksvi pdgpaaqdgk metgffspwk tpkpmmerwe nqgspqtsls
      541 apampqnipy ppalhrssfp dsteafdprk pdpyelyeks raiyesrrpd ykeldvhlrr
      601 mesgfgfril ggdepgqpil igaviamgsa drdgrlhpgd elvyvdgipv agkthryvid
      661 lmhnaarngq vnltvrrkvl ptepssqkgp pppgttpprs spstrkmann qgepcpengr
      721 spgsvsthhs sprsdyttya nsnhavsssn atppegftsq slqtsdvvih rkenegfgfv
      781 iisslnrpes gstitvphki griidgspad rcaklkvgdr ilavngqsii nmphadivkl
      841 ikdaglsvtl riipqeashy telnspasap ssekqspmaq qhspmaqqsp laqqspvaqh
      901 spvaqppppq plqlqghens yrsevkarqd vkpdirqppf tdyrqsstdy rqppldyrhp
      961 pvmdyqqppp ldyrqppmid yrqhspdtrq yplseyrqpq dfdyftvdle kgakgfgfsi
     1021 rggreykmdl yvlrlaedgp airngrmrvg dqiieinges trdmtharai eliksggrrv
     1081 rlllkrgtgq vpeydepnsw saptatstgl pevalslddi isplfsshia ppsdpshqis
     1141 peatwdikre hdvrkpkels vnghkkkrlg eqrersaspk kvdrskheea swkgysegkn
     1201 ktidggrpts eskvvghsim ieagarehvc agtsdeqfgr lrktegkrgg slskkedhks
     1261 tntsekksaa asdhvkidag gtktyssnrc sspgsdvdns qrdpdgkpse fprkghlhsi
     1321 strttnttvr katvspgpwk ipgsdklpsv lksgtsamsr
//
LOCUS       XP_053920142            1354 aa            linear   VRT 09-MAR-2023
DEFINITION  membrane-associated guanylate kinase, WW and PDZ domain-containing
            protein 2 isoform X11 [Cuculus canorus].
ACCESSION   XP_053920142
VERSION     XP_053920142.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064167.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1354
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1354
                     /product="membrane-associated guanylate kinase, WW and PDZ
                     domain-containing protein 2 isoform X11"
                     /calculated_mol_wt=150045
     Region          14..99
                     /region_name="PDZ0_MAGI-1_3-like"
                     /note="PDZ domain 0 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06730"
                     /db_xref="CDD:467212"
     Site            order(27..33,45,48,79,83,86..87)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467212"
     Region          118..>206
                     /region_name="NK"
                     /note="Nucleoside/nucleotide kinase (NK) is a protein
                     superfamily consisting of multiple families of enzymes
                     that share structural similarity and are functionally
                     related to the catalysis of the reversible phosphate group
                     transfer from nucleoside triphosphates...; cl17190"
                     /db_xref="CDD:450170"
     Region          198..259
                     /region_name="MAGI_u1"
                     /note="Unstructured region on MAGI; pfam16663"
                     /db_xref="CDD:435496"
     Region          306..336
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(320,331)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          351..382
                     /region_name="WW"
                     /note="Domain with 2 conserved Trp (W) residues;
                     smart00456"
                     /db_xref="CDD:197736"
     Site            order(366,377)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          468..552
                     /region_name="PDZ1_MAGI-1_3-like"
                     /note="PDZ domain 1 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06731"
                     /db_xref="CDD:467213"
     Site            order(468,489..493,495,516,518,524,526..527,549,551..552)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467213"
     Site            order(479..485,497,500,530,534,537..538)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467213"
     Region          644..725
                     /region_name="PDZ2_MAGI-1_3-like"
                     /note="PDZ domain 2 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06732"
                     /db_xref="CDD:467214"
     Site            order(657..663,672,675,702,706,709..710)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467214"
     Region          805..889
                     /region_name="PDZ3_MAGI-1_3-like"
                     /note="PDZ domain 3 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06733"
                     /db_xref="CDD:467215"
     Site            order(816..822,834,837,867,871,874..875)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467215"
     Region          978..1066
                     /region_name="PDZ4_MAGI-1_3-like"
                     /note="PDZ domain 4 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06734"
                     /db_xref="CDD:467216"
     Site            order(988..994,1013,1016,1046,1050,1053..1054)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467216"
     Region          1216..1298
                     /region_name="PDZ5_MAGI-1_3-like"
                     /note="PDZ domain 5 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06735"
                     /db_xref="CDD:467217"
     Site            order(1227..1233,1245,1248,1278,1282,1285..1286)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467217"
     CDS             1..1354
                     /gene="MAGI2"
                     /coded_by="XM_054064167.1:70..4134"
                     /db_xref="GeneID:104059683"
ORIGIN      
        1 mskglkkksh wtsrvheivi vrnaegqlgf elkggaengq fpylgevkpg kvayeggskl
       61 vpeelllevn etpvagltir dvlavikhck dpirlkcvkq ggivdkdlrh ylnlrfqkgs
      121 vdhelqqiir dnlylrtvpc ttrphkegev pgvdyifitv edfmeleksg allesgtyed
      181 nyygtpkppa epaplllnvt dqilpggtpg aegkrkrnks vsnmektgve ppeeeeeerp
      241 vvngndvtvt pesseheeks tgasaevsst qpcpepgytq peeakedmdv tkqtkpeend
      301 dlgplpdnwe maytekgevy fidhntktts wldprlakka kppeeckene lpygwekidd
      361 piygtyyvdh inrrtqfenp vleakrklqq hnmpnaelgt kpmqaqgfrv enssstlprp
      421 kfahprpapk rsrsvndlsq yqrdpvgtrr lhekplftrd asqlkgtfls ttlkksnmgf
      481 gftiiggdep deflqvksvi pdgpaaqdgk metgdvivyi nevcvlghth advvklfqsv
      541 pigqsvnlvl crgyplpfdp edpansmvpp lavmerppvv vngrhnyety leyisrtsqs
      601 vpdvtdrpph slhsipadsq ldstfpppah ddnvsmassg atqaelmtlt ivkgaqgfgf
      661 tiadsptgqr vkqildiqgc pglcegdliv einqqnvqnl shaevvdilk ecpvgsetsl
      721 iihrggffsp wktpkpmmer wenqgspqts lsapampqni pyppalhrss fpdsteafdp
      781 rkpdpyelye ksraiyesrr pdykeldvhl rrmesgfgfr ilggdepgqp iligaviamg
      841 sadrdgrlhp gdelvyvdgi pvagkthryv idlmhnaarn gqvnltvrrk vlptepssqk
      901 gppppgttpp rsspstrkma nnqgepcpen grspgsvsth hssprsdytt yansnhavss
      961 snatppegft sqslqtsdvv ihrkenegfg fviisslnrp esgstitvph kigriidgsp
     1021 adrcaklkvg drilavngqs iinmphadiv klikdaglsv tlriipqeas hytelnspas
     1081 apssekqspm aqqhspmaqq splaqqspva qhspvaqppp pqplqlqghe nsyrsevkar
     1141 qdvkpdirqp pftdyrqsst dyrqppldyr hppvmdyqqp ppldyrqppm idyrqhspdt
     1201 rqyplseyrq pqdfdyftvd lekgakgfgf sirggreykm dlyvlrlaed gpairngrmr
     1261 vgdqiieing estrdmthar aieliksggr rvrlllkrgt gqvpeygmvp sslsmcmksd
     1321 khgspyfyll ghpkdttsqt pgvlplpppq vcrk
//
LOCUS       XP_053920150            1326 aa            linear   VRT 09-MAR-2023
DEFINITION  membrane-associated guanylate kinase, WW and PDZ domain-containing
            protein 2 isoform X12 [Cuculus canorus].
ACCESSION   XP_053920150
VERSION     XP_053920150.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064175.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1326
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1326
                     /product="membrane-associated guanylate kinase, WW and PDZ
                     domain-containing protein 2 isoform X12"
                     /calculated_mol_wt=147048
     Region          14..99
                     /region_name="PDZ0_MAGI-1_3-like"
                     /note="PDZ domain 0 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06730"
                     /db_xref="CDD:467212"
     Site            order(27..33,45,48,79,83,86..87)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467212"
     Region          118..>206
                     /region_name="NK"
                     /note="Nucleoside/nucleotide kinase (NK) is a protein
                     superfamily consisting of multiple families of enzymes
                     that share structural similarity and are functionally
                     related to the catalysis of the reversible phosphate group
                     transfer from nucleoside triphosphates...; cl17190"
                     /db_xref="CDD:450170"
     Region          198..259
                     /region_name="MAGI_u1"
                     /note="Unstructured region on MAGI; pfam16663"
                     /db_xref="CDD:435496"
     Region          306..336
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(320,331)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          351..382
                     /region_name="WW"
                     /note="Domain with 2 conserved Trp (W) residues;
                     smart00456"
                     /db_xref="CDD:197736"
     Site            order(366,377)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          468..552
                     /region_name="PDZ1_MAGI-1_3-like"
                     /note="PDZ domain 1 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06731"
                     /db_xref="CDD:467213"
     Site            order(468,489..493,495,516,518,524,526..527,549,551..552)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467213"
     Site            order(479..485,497,500,530,534,537..538)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467213"
     Region          644..725
                     /region_name="PDZ2_MAGI-1_3-like"
                     /note="PDZ domain 2 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06732"
                     /db_xref="CDD:467214"
     Site            order(657..663,672,675,702,706,709..710)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467214"
     Region          805..889
                     /region_name="PDZ3_MAGI-1_3-like"
                     /note="PDZ domain 3 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06733"
                     /db_xref="CDD:467215"
     Site            order(816..822,834,837,867,871,874..875)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467215"
     Region          978..1066
                     /region_name="PDZ4_MAGI-1_3-like"
                     /note="PDZ domain 4 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06734"
                     /db_xref="CDD:467216"
     Site            order(988..994,1013,1016,1046,1050,1053..1054)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467216"
     Region          1216..1298
                     /region_name="PDZ5_MAGI-1_3-like"
                     /note="PDZ domain 5 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06735"
                     /db_xref="CDD:467217"
     Site            order(1227..1233,1245,1248,1278,1282,1285..1286)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467217"
     CDS             1..1326
                     /gene="MAGI2"
                     /coded_by="XM_054064175.1:72..4052"
                     /db_xref="GeneID:104059683"
ORIGIN      
        1 mskglkkksh wtsrvheivi vrnaegqlgf elkggaengq fpylgevkpg kvayeggskl
       61 vpeelllevn etpvagltir dvlavikhck dpirlkcvkq ggivdkdlrh ylnlrfqkgs
      121 vdhelqqiir dnlylrtvpc ttrphkegev pgvdyifitv edfmeleksg allesgtyed
      181 nyygtpkppa epaplllnvt dqilpggtpg aegkrkrnks vsnmektgve ppeeeeeerp
      241 vvngndvtvt pesseheeks tgasaevsst qpcpepgytq peeakedmdv tkqtkpeend
      301 dlgplpdnwe maytekgevy fidhntktts wldprlakka kppeeckene lpygwekidd
      361 piygtyyvdh inrrtqfenp vleakrklqq hnmpnaelgt kpmqaqgfrv enssstlprp
      421 kfahprpapk rsrsvndlsq yqrdpvgtrr lhekplftrd asqlkgtfls ttlkksnmgf
      481 gftiiggdep deflqvksvi pdgpaaqdgk metgdvivyi nevcvlghth advvklfqsv
      541 pigqsvnlvl crgyplpfdp edpansmvpp lavmerppvv vngrhnyety leyisrtsqs
      601 vpdvtdrpph slhsipadsq ldstfpppah ddnvsmassg atqaelmtlt ivkgaqgfgf
      661 tiadsptgqr vkqildiqgc pglcegdliv einqqnvqnl shaevvdilk ecpvgsetsl
      721 iihrggffsp wktpkpmmer wenqgspqts lsapampqni pyppalhrss fpdsteafdp
      781 rkpdpyelye ksraiyesrr pdykeldvhl rrmesgfgfr ilggdepgqp iligaviamg
      841 sadrdgrlhp gdelvyvdgi pvagkthryv idlmhnaarn gqvnltvrrk vlptepssqk
      901 gppppgttpp rsspstrkma nnqgepcpen grspgsvsth hssprsdytt yansnhavss
      961 snatppegft sqslqtsdvv ihrkenegfg fviisslnrp esgstitvph kigriidgsp
     1021 adrcaklkvg drilavngqs iinmphadiv klikdaglsv tlriipqeas hytelnspas
     1081 apssekqspm aqqhspmaqq splaqqspva qhspvaqppp pqplqlqghe nsyrsevkar
     1141 qdvkpdirqp pftdyrqsst dyrqppldyr hppvmdyqqp ppldyrqppm idyrqhspdt
     1201 rqyplseyrq pqdfdyftvd lekgakgfgf sirggreykm dlyvlrlaed gpairngrmr
     1261 vgdqiieing estrdmthar aieliksggr rvrlllkrgt gqvpeygcss psfrngtfqs
     1321 lhvhek
//
LOCUS       XP_053920158            1320 aa            linear   VRT 09-MAR-2023
DEFINITION  membrane-associated guanylate kinase, WW and PDZ domain-containing
            protein 2 isoform X13 [Cuculus canorus].
ACCESSION   XP_053920158
VERSION     XP_053920158.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064183.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1320
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1320
                     /product="membrane-associated guanylate kinase, WW and PDZ
                     domain-containing protein 2 isoform X13"
                     /calculated_mol_wt=146471
     Region          14..99
                     /region_name="PDZ0_MAGI-1_3-like"
                     /note="PDZ domain 0 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06730"
                     /db_xref="CDD:467212"
     Site            order(27..33,45,48,79,83,86..87)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467212"
     Region          118..>206
                     /region_name="NK"
                     /note="Nucleoside/nucleotide kinase (NK) is a protein
                     superfamily consisting of multiple families of enzymes
                     that share structural similarity and are functionally
                     related to the catalysis of the reversible phosphate group
                     transfer from nucleoside triphosphates...; cl17190"
                     /db_xref="CDD:450170"
     Region          198..259
                     /region_name="MAGI_u1"
                     /note="Unstructured region on MAGI; pfam16663"
                     /db_xref="CDD:435496"
     Region          306..336
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(320,331)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          351..382
                     /region_name="WW"
                     /note="Domain with 2 conserved Trp (W) residues;
                     smart00456"
                     /db_xref="CDD:197736"
     Site            order(366,377)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          468..552
                     /region_name="PDZ1_MAGI-1_3-like"
                     /note="PDZ domain 1 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06731"
                     /db_xref="CDD:467213"
     Site            order(468,489..493,495,516,518,524,526..527,549,551..552)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467213"
     Site            order(479..485,497,500,530,534,537..538)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467213"
     Region          644..725
                     /region_name="PDZ2_MAGI-1_3-like"
                     /note="PDZ domain 2 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06732"
                     /db_xref="CDD:467214"
     Site            order(657..663,672,675,702,706,709..710)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467214"
     Region          805..889
                     /region_name="PDZ3_MAGI-1_3-like"
                     /note="PDZ domain 3 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06733"
                     /db_xref="CDD:467215"
     Site            order(816..822,834,837,867,871,874..875)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467215"
     Region          949..1037
                     /region_name="PDZ4_MAGI-1_3-like"
                     /note="PDZ domain 4 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06734"
                     /db_xref="CDD:467216"
     Site            order(959..965,984,987,1017,1021,1024..1025)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467216"
     Region          1182..1264
                     /region_name="PDZ5_MAGI-1_3-like"
                     /note="PDZ domain 5 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06735"
                     /db_xref="CDD:467217"
     Site            order(1193..1199,1211,1214,1244,1248,1251..1252)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467217"
     CDS             1..1320
                     /gene="MAGI2"
                     /coded_by="XM_054064183.1:69..4031"
                     /db_xref="GeneID:104059683"
ORIGIN      
        1 mskglkkksh wtsrvheivi vrnaegqlgf elkggaengq fpylgevkpg kvayeggskl
       61 vpeelllevn etpvagltir dvlavikhck dpirlkcvkq ggivdkdlrh ylnlrfqkgs
      121 vdhelqqiir dnlylrtvpc ttrphkegev pgvdyifitv edfmeleksg allesgtyed
      181 nyygtpkppa epaplllnvt dqilpggtpg aegkrkrnks vsnmektgve ppeeeeeerp
      241 vvngndvtvt pesseheeks tgasaevsst qpcpepgytq peeakedmdv tkqtkpeend
      301 dlgplpdnwe maytekgevy fidhntktts wldprlakka kppeeckene lpygwekidd
      361 piygtyyvdh inrrtqfenp vleakrklqq hnmpnaelgt kpmqaqgfrv enssstlprp
      421 kfahprpapk rsrsvndlsq yqrdpvgtrr lhekplftrd asqlkgtfls ttlkksnmgf
      481 gftiiggdep deflqvksvi pdgpaaqdgk metgdvivyi nevcvlghth advvklfqsv
      541 pigqsvnlvl crgyplpfdp edpansmvpp lavmerppvv vngrhnyety leyisrtsqs
      601 vpdvtdrpph slhsipadsq ldstfpppah ddnvsmassg atqaelmtlt ivkgaqgfgf
      661 tiadsptgqr vkqildiqgc pglcegdliv einqqnvqnl shaevvdilk ecpvgsetsl
      721 iihrggffsp wktpkpmmer wenqgspqts lsapampqni pyppalhrss fpdsteafdp
      781 rkpdpyelye ksraiyesrr pdykeldvhl rrmesgfgfr ilggdepgqp iligaviamg
      841 sadrdgrlhp gdelvyvdgi pvagkthryv idlmhnaarn gqvnltvrrk vlptgepcpe
      901 ngrspgsvst hhssprsdyt tyansnhavs ssnatppegf tsqslqtsdv vihrkenegf
      961 gfviisslnr pesgstitvp hkigriidgs padrcaklkv gdrilavngq siinmphadi
     1021 vklikdagls vtlriipqee lnspasapss ekqspmaqqh spmaqqspla qqspvaqhsp
     1081 vaqppppqpl qlqghensyr sevkarqdvk pdirqppftd yrqsstdyrq ppldyrhppv
     1141 mdyqqpppld yrqppmidyr qhspdtrqyp lseyrqpqdf dyftvdlekg akgfgfsirg
     1201 greykmdlyv lrlaedgpai rngrmrvgdq iieingestr dmtharaiel iksggrrvrl
     1261 llkrgtgqvp eygmvpssls mcmksdkhgs pyfyllghpk dttsqtpgvl plpppqvcrk
//
LOCUS       XP_053920165            1581 aa            linear   VRT 09-MAR-2023
DEFINITION  membrane-associated guanylate kinase, WW and PDZ domain-containing
            protein 2 isoform X14 [Cuculus canorus].
ACCESSION   XP_053920165
VERSION     XP_053920165.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064190.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1581
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1581
                     /product="membrane-associated guanylate kinase, WW and PDZ
                     domain-containing protein 2 isoform X14"
                     /calculated_mol_wt=174494
     Region          14..99
                     /region_name="PDZ0_MAGI-1_3-like"
                     /note="PDZ domain 0 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06730"
                     /db_xref="CDD:467212"
     Site            order(27..33,45,48,79,83,86..87)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467212"
     Region          118..>206
                     /region_name="NK"
                     /note="Nucleoside/nucleotide kinase (NK) is a protein
                     superfamily consisting of multiple families of enzymes
                     that share structural similarity and are functionally
                     related to the catalysis of the reversible phosphate group
                     transfer from nucleoside triphosphates...; cl17190"
                     /db_xref="CDD:450170"
     Region          198..259
                     /region_name="MAGI_u1"
                     /note="Unstructured region on MAGI; pfam16663"
                     /db_xref="CDD:435496"
     Region          305..334
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          351..382
                     /region_name="WW"
                     /note="Domain with 2 conserved Trp (W) residues;
                     smart00456"
                     /db_xref="CDD:197736"
     Site            order(366,377)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          468..552
                     /region_name="PDZ1_MAGI-1_3-like"
                     /note="PDZ domain 1 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06731"
                     /db_xref="CDD:467213"
     Site            order(468,489..493,495,516,518,524,526..527,549,551..552)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467213"
     Site            order(479..485,497,500,530,534,537..538)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467213"
     Region          644..725
                     /region_name="PDZ2_MAGI-1_3-like"
                     /note="PDZ domain 2 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06732"
                     /db_xref="CDD:467214"
     Site            order(657..663,672,675,702,706,709..710)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467214"
     Region          819..903
                     /region_name="PDZ3_MAGI-1_3-like"
                     /note="PDZ domain 3 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06733"
                     /db_xref="CDD:467215"
     Site            order(830..836,848,851,881,885,888..889)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467215"
     Region          992..1080
                     /region_name="PDZ4_MAGI-1_3-like"
                     /note="PDZ domain 4 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06734"
                     /db_xref="CDD:467216"
     Site            order(1002..1008,1027,1030,1060,1064,1067..1068)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467216"
     Region          1225..1307
                     /region_name="PDZ5_MAGI-1_3-like"
                     /note="PDZ domain 5 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06735"
                     /db_xref="CDD:467217"
     Site            order(1236..1242,1254,1257,1287,1291,1294..1295)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467217"
     CDS             1..1581
                     /gene="MAGI2"
                     /coded_by="XM_054064190.1:69..4814"
                     /db_xref="GeneID:104059683"
ORIGIN      
        1 mskglkkksh wtsrvheivi vrnaegqlgf elkggaengq fpylgevkpg kvayeggskl
       61 vpeelllevn etpvagltir dvlavikhck dpirlkcvkq ggivdkdlrh ylnlrfqkgs
      121 vdhelqqiir dnlylrtvpc ttrphkegev pgvdyifitv edfmeleksg allesgtyed
      181 nyygtpkppa epaplllnvt dqilpggtpg aegkrkrnks vsnmektgve ppeeeeeerp
      241 vvngndvtvt pesseheeks tgasaevsst qpcpepgytq peeakedmdv tkqtkpeend
      301 dlgplpdnwe maytekgevy fidhntktts wldprlakka kppeeckene lpygwekidd
      361 piygtyyvdh inrrtqfenp vleakrklqq hnmpnaelgt kpmqaqgfrv enssstlprp
      421 kfahprpapk rsrsvndlsq yqrdpvgtrr lhekplftrd asqlkgtfls ttlkksnmgf
      481 gftiiggdep deflqvksvi pdgpaaqdgk metgdvivyi nevcvlghth advvklfqsv
      541 pigqsvnlvl crgyplpfdp edpansmvpp lavmerppvv vngrhnyety leyisrtsqs
      601 vpdvtdrpph slhsipadsq ldstfpppah ddnvsmassg atqaelmtlt ivkgaqgfgf
      661 tiadsptgqr vkqildiqgc pglcegdliv einqqnvqnl shaevvdilk ecpvgsetsl
      721 iihrggffsp wktpkpmmer wenqgspqts lsapampqni pyppalhrss fpdsteafdp
      781 rkpdpyelye ksraiyesrq qvlprtgfrv dssgpdykel dvhlrrmesg fgfrilggde
      841 pgqpiligav iamgsadrdg rlhpgdelvy vdgipvagkt hryvidlmhn aarngqvnlt
      901 vrrkvlptep ssqkgppppg ttpprsspst rkmannqgep cpengrspgs vsthhssprs
      961 dyttyansnh avsssnatpp egftsqslqt sdvvihrken egfgfviiss lnrpesgsti
     1021 tvphkigrii dgspadrcak lkvgdrilav ngqsiinmph adivklikda glsvtlriip
     1081 qeelnspasa pssekqspma qqhspmaqqs plaqqspvaq hspvaqpppp qplqlqghen
     1141 syrsevkarq dvkpdirqpp ftdyrqsstd yrqppldyrh ppvmdyqqpp pldyrqppmi
     1201 dyrqhspdtr qyplseyrqp qdfdyftvdl ekgakgfgfs irggreykmd lyvlrlaedg
     1261 pairngrmrv gdqiieinge strdmthara ieliksggrr vrlllkrgtg qvpeydepns
     1321 wsaptatstg lpevalsldd iisplfsshi appsdpshqi speatwdikr ehdvrkpkel
     1381 svnghkkkrl geqrersasp kkvdrskhee aswkgysegk nktidggrpt seskvvghsi
     1441 mieagarehv cagtsdeqfg rlrktegkrg gslskkedhk stntsekksa aasdhvkida
     1501 ggtktyssnr csspgsdvdn sqrdpdgkps efprkghlhs istrttnttv rkatvspgpw
     1561 kipgsdklps vlksgtsams r
//
LOCUS       XP_053920174            1509 aa            linear   VRT 09-MAR-2023
DEFINITION  membrane-associated guanylate kinase, WW and PDZ domain-containing
            protein 2 isoform X15 [Cuculus canorus].
ACCESSION   XP_053920174
VERSION     XP_053920174.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064199.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1509
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1509
                     /product="membrane-associated guanylate kinase, WW and PDZ
                     domain-containing protein 2 isoform X15"
                     /calculated_mol_wt=166559
     Region          14..99
                     /region_name="PDZ0_MAGI-1_3-like"
                     /note="PDZ domain 0 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06730"
                     /db_xref="CDD:467212"
     Site            order(27..33,45,48,79,83,86..87)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467212"
     Region          118..>206
                     /region_name="NK"
                     /note="Nucleoside/nucleotide kinase (NK) is a protein
                     superfamily consisting of multiple families of enzymes
                     that share structural similarity and are functionally
                     related to the catalysis of the reversible phosphate group
                     transfer from nucleoside triphosphates...; cl17190"
                     /db_xref="CDD:450170"
     Region          198..259
                     /region_name="MAGI_u1"
                     /note="Unstructured region on MAGI; pfam16663"
                     /db_xref="CDD:435496"
     Region          305..334
                     /region_name="WW"
                     /note="WW domain; pfam00397"
                     /db_xref="CDD:459800"
     Region          351..382
                     /region_name="WW"
                     /note="Domain with 2 conserved Trp (W) residues;
                     smart00456"
                     /db_xref="CDD:197736"
     Site            order(366,377)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          425..509
                     /region_name="PDZ1_MAGI-1_3-like"
                     /note="PDZ domain 1 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06731"
                     /db_xref="CDD:467213"
     Site            order(425,446..450,452,473,475,481,483..484,506,508..509)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467213"
     Site            order(436..442,454,457,487,491,494..495)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467213"
     Region          601..682
                     /region_name="PDZ2_MAGI-1_3-like"
                     /note="PDZ domain 2 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06732"
                     /db_xref="CDD:467214"
     Site            order(614..620,629,632,659,663,666..667)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467214"
     Region          776..860
                     /region_name="PDZ3_MAGI-1_3-like"
                     /note="PDZ domain 3 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06733"
                     /db_xref="CDD:467215"
     Site            order(787..793,805,808,838,842,845..846)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467215"
     Region          920..1008
                     /region_name="PDZ4_MAGI-1_3-like"
                     /note="PDZ domain 4 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06734"
                     /db_xref="CDD:467216"
     Site            order(930..936,955,958,988,992,995..996)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467216"
     Region          1153..1235
                     /region_name="PDZ5_MAGI-1_3-like"
                     /note="PDZ domain 5 of membrane-associated guanylate
                     kinase inverted 1 (MAGI-1), MAGI-2, and MAGI-3, and
                     related domains; cd06735"
                     /db_xref="CDD:467217"
     Site            order(1164..1170,1182,1185,1215,1219,1222..1223)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467217"
     CDS             1..1509
                     /gene="MAGI2"
                     /coded_by="XM_054064199.1:68..4597"
                     /db_xref="GeneID:104059683"
ORIGIN      
        1 mskglkkksh wtsrvheivi vrnaegqlgf elkggaengq fpylgevkpg kvayeggskl
       61 vpeelllevn etpvagltir dvlavikhck dpirlkcvkq ggivdkdlrh ylnlrfqkgs
      121 vdhelqqiir dnlylrtvpc ttrphkegev pgvdyifitv edfmeleksg allesgtyed
      181 nyygtpkppa epaplllnvt dqilpggtpg aegkrkrnks vsnmektgve ppeeeeeerp
      241 vvngndvtvt pesseheeks tgasaevsst qpcpepgytq peeakedmdv tkqtkpeend
      301 dlgplpdnwe maytekgevy fidhntktts wldprlakka kppeeckene lpygwekidd
      361 piygtyyvdh inrrtqfenp vleakrklqq hnmpnaelgt kpmqaqgfre kplftrdasq
      421 lkgtflsttl kksnmgfgft iiggdepdef lqvksvipdg paaqdgkmet gdvivyinev
      481 cvlghthadv vklfqsvpig qsvnlvlcrg yplpfdpedp ansmvpplav merppvvvng
      541 rhnyetyley isrtsqsvpd vtdrpphslh sipadsqlds tfpppahddn vsmassgatq
      601 aelmtltivk gaqgfgftia dsptgqrvkq ildiqgcpgl cegdlivein qqnvqnlsha
      661 evvdilkecp vgsetsliih rggffspwkt pkpmmerwen qgspqtslsa pampqnipyp
      721 palhrssfpd steafdprkp dpyelyeksr aiyesrqqvl prtgfrvdss gpdykeldvh
      781 lrrmesgfgf rilggdepgq piligaviam gsadrdgrlh pgdelvyvdg ipvagkthry
      841 vidlmhnaar ngqvnltvrr kvlptgepcp engrspgsvs thhssprsdy ttyansnhav
      901 sssnatppeg ftsqslqtsd vvihrkeneg fgfviissln rpesgstitv phkigriidg
      961 spadrcaklk vgdrilavng qsiinmphad ivklikdagl svtlriipqe elnspasaps
     1021 sekqspmaqq hspmaqqspl aqqspvaqhs pvaqppppqp lqlqghensy rsevkarqdv
     1081 kpdirqppft dyrqsstdyr qppldyrhpp vmdyqqpppl dyrqppmidy rqhspdtrqy
     1141 plseyrqpqd fdyftvdlek gakgfgfsir ggreykmdly vlrlaedgpa irngrmrvgd
     1201 qiieingest rdmtharaie liksggrrvr lllkrgtgqv peydepnsws aptatstglp
     1261 evalslddii splfsshiap psdpshqisp eatwdikreh dvrkpkelsv nghkkkrlge
     1321 qrersaspkk vdrskheeas wkgysegknk tidggrptse skvvghsimi eagarehvca
     1381 gtsdeqfgrl rktegkrggs lskkedhkst ntsekksaaa sdhvkidagg tktyssnrcs
     1441 spgsdvdnsq rdpdgkpsef prkghlhsis trttnttvrk atvspgpwki pgsdklpsvl
     1501 ksgtsamsr
//
LOCUS       XP_053920185             757 aa            linear   VRT 09-MAR-2023
DEFINITION  protein PHTF2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053920185
VERSION     XP_053920185.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064210.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..757
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..757
                     /product="protein PHTF2 isoform X1"
                     /calculated_mol_wt=86113
     Region          3..158
                     /region_name="PHTF1-2_N"
                     /note="Homeodomain containing protein PHTF1/2, N-terminal;
                     pfam12129"
                     /db_xref="CDD:463466"
     CDS             1..757
                     /gene="PHTF2"
                     /coded_by="XM_054064210.1:203..2476"
                     /db_xref="GeneID:104059678"
ORIGIN      
        1 maskvtdaiv wyqkkigayd qqiweksveq reikfirlgl rnkpkktghv kpdlidvdlv
       61 rgsafakakp espwtsltrk givrvvffpf fyrwwlqvts rviffwllvl yllqvaavvl
      121 fytaqsphni pltevigpiw lmlllgtvhc qivstrtpkp ppstggkrrr klrkaahlev
      181 hregdgsstt dntqegtvqs ygtstscsig avfrdiwhaa fflsgskkak nsidkstetd
      241 ngyvsldgkk tgksseeciq aherrfevvk peesgwstat mrdtfsnhsr hkdthrtvtn
      301 lsdevsseeg petgyslrrn vertssdctl rnrkshhykk hypledtpks gtscssrcss
      361 srqdsesarp esetedvlwe dllhcaechs scssetdves pqmnpcvkke yrddpfhqsh
      421 lpwihslnpg lekisaivwe gndckkadms vleisgmimn rvnsyvpgig yqifgnvisl
      481 ilglmpfvfr lfqakdleql athsatelcm tafgsngdil vlsmviisfv vrvslvwiff
      541 fllcvaerty kqrllfaklf ghltsarrar ksevphfrlk kvqnikmwls lrsylkrrgp
      601 qrsvdvivss aflltisvvf iccaqllhmh eifldchynw eliiwcislt lfllrfvtlg
      661 setskkysnt sillteqinl ylkmekkpnk kdeltlvnnv lklatkllke ldspfrlygl
      721 tmnpllynit qvvilsavsg visdllgfnl klwkiks
//
LOCUS       XP_053920195             757 aa            linear   VRT 09-MAR-2023
DEFINITION  protein PHTF2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053920195
VERSION     XP_053920195.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064220.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..757
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..757
                     /product="protein PHTF2 isoform X1"
                     /calculated_mol_wt=86113
     Region          3..158
                     /region_name="PHTF1-2_N"
                     /note="Homeodomain containing protein PHTF1/2, N-terminal;
                     pfam12129"
                     /db_xref="CDD:463466"
     CDS             1..757
                     /gene="PHTF2"
                     /coded_by="XM_054064220.1:50..2323"
                     /db_xref="GeneID:104059678"
ORIGIN      
        1 maskvtdaiv wyqkkigayd qqiweksveq reikfirlgl rnkpkktghv kpdlidvdlv
       61 rgsafakakp espwtsltrk givrvvffpf fyrwwlqvts rviffwllvl yllqvaavvl
      121 fytaqsphni pltevigpiw lmlllgtvhc qivstrtpkp ppstggkrrr klrkaahlev
      181 hregdgsstt dntqegtvqs ygtstscsig avfrdiwhaa fflsgskkak nsidkstetd
      241 ngyvsldgkk tgksseeciq aherrfevvk peesgwstat mrdtfsnhsr hkdthrtvtn
      301 lsdevsseeg petgyslrrn vertssdctl rnrkshhykk hypledtpks gtscssrcss
      361 srqdsesarp esetedvlwe dllhcaechs scssetdves pqmnpcvkke yrddpfhqsh
      421 lpwihslnpg lekisaivwe gndckkadms vleisgmimn rvnsyvpgig yqifgnvisl
      481 ilglmpfvfr lfqakdleql athsatelcm tafgsngdil vlsmviisfv vrvslvwiff
      541 fllcvaerty kqrllfaklf ghltsarrar ksevphfrlk kvqnikmwls lrsylkrrgp
      601 qrsvdvivss aflltisvvf iccaqllhmh eifldchynw eliiwcislt lfllrfvtlg
      661 setskkysnt sillteqinl ylkmekkpnk kdeltlvnnv lklatkllke ldspfrlygl
      721 tmnpllynit qvvilsavsg visdllgfnl klwkiks
//
LOCUS       XP_053920206             753 aa            linear   VRT 09-MAR-2023
DEFINITION  protein PHTF2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053920206
VERSION     XP_053920206.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064231.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..753
                     /product="protein PHTF2 isoform X2"
                     /calculated_mol_wt=85583
     Region          3..154
                     /region_name="PHTF1-2_N"
                     /note="Homeodomain containing protein PHTF1/2, N-terminal;
                     pfam12129"
                     /db_xref="CDD:463466"
     CDS             1..753
                     /gene="PHTF2"
                     /coded_by="XM_054064231.1:202..2463"
                     /db_xref="GeneID:104059678"
ORIGIN      
        1 maskvtdaiv wyqkkigayd qqiweksveq reikglrnkp kktghvkpdl idvdlvrgsa
       61 fakakpespw tsltrkgivr vvffpffyrw wlqvtsrvif fwllvlyllq vaavvlfyta
      121 qsphniplte vigpiwlmll lgtvhcqivs trtpkpppst ggkrrrklrk aahlevhreg
      181 dgssttdntq egtvqsygts tscsigavfr diwhaaffls gskkaknsid kstetdngyv
      241 sldgkktgks seeciqaher rfevvkpees gwstatmrdt fsnhsrhkdt hrtvtnlsde
      301 vsseegpetg yslrrnvert ssdctlrnrk shhykkhypl edtpksgtsc ssrcsssrqd
      361 sesarpeset edvlwedllh caechsscss etdvespqmn pcvkkeyrdd pfhqshlpwi
      421 hslnpgleki saivwegndc kkadmsvlei sgmimnrvns yvpgigyqif gnvislilgl
      481 mpfvfrlfqa kdleqlaths atelcmtafg sngdilvlsm viisfvvrvs lvwifffllc
      541 vaertykqrl lfaklfghlt sarrarksev phfrlkkvqn ikmwlslrsy lkrrgpqrsv
      601 dvivssafll tisvvficca qllhmheifl dchynwelii wcisltlfll rfvtlgsets
      661 kkysntsill teqinlylkm ekkpnkkdel tlvnnvlkla tkllkeldsp frlygltmnp
      721 llynitqvvi lsavsgvisd llgfnlklwk iks
//
LOCUS       XP_053920209             714 aa            linear   VRT 09-MAR-2023
DEFINITION  protein PHTF2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053920209
VERSION     XP_053920209.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064234.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..714
                     /product="protein PHTF2 isoform X3"
                     /calculated_mol_wt=81309
     Region          3..158
                     /region_name="PHTF1-2_N"
                     /note="Homeodomain containing protein PHTF1/2, N-terminal;
                     pfam12129"
                     /db_xref="CDD:463466"
     CDS             1..714
                     /gene="PHTF2"
                     /coded_by="XM_054064234.1:204..2348"
                     /db_xref="GeneID:104059678"
ORIGIN      
        1 maskvtdaiv wyqkkigayd qqiweksveq reikfirlgl rnkpkktghv kpdlidvdlv
       61 rgsafakakp espwtsltrk givrvvffpf fyrwwlqvts rviffwllvl yllqvaavvl
      121 fytaqsphni pltevigpiw lmlllgtvhc qivstrtpkp ppstggkrrr klrkaahlev
      181 hregdgsstt dntqegtvqs ygtstscsig avfrdiwhaa fflsgskkak nsidkstetd
      241 ngyvsldgkk tgksseeciq aherrfevvk peesgwstat mrdtfsnhsr hkdthrtvtn
      301 lsdevsseeg petgyslrrn vertssdctl rnrkshhykk hypledtpks gtscssrcss
      361 srqdsesarp esetedvlwe dllhcaechs scssetdves pqmnpcvkke yrddpfhqvn
      421 syvpgigyqi fgnvislilg lmpfvfrlfq akdleqlath satelcmtaf gsngdilvls
      481 mviisfvvrv slvwifffll cvaertykqr llfaklfghl tsarrarkse vphfrlkkvq
      541 nikmwlslrs ylkrrgpqrs vdvivssafl ltisvvficc aqllhmheif ldchynweli
      601 iwcisltlfl lrfvtlgset skkysntsil lteqinlylk mekkpnkkde ltlvnnvlkl
      661 atkllkelds pfrlygltmn pllynitqvv ilsavsgvis dllgfnlklw kiks
//
LOCUS       XP_053920216             702 aa            linear   VRT 09-MAR-2023
DEFINITION  protein PHTF2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053920216
VERSION     XP_053920216.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064241.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..702
                     /product="protein PHTF2 isoform X4"
                     /calculated_mol_wt=80202
     Region          3..158
                     /region_name="PHTF1-2_N"
                     /note="Homeodomain containing protein PHTF1/2, N-terminal;
                     pfam12129"
                     /db_xref="CDD:463466"
     CDS             1..702
                     /gene="PHTF2"
                     /coded_by="XM_054064241.1:204..2312"
                     /db_xref="GeneID:104059678"
ORIGIN      
        1 maskvtdaiv wyqkkigayd qqiweksveq reikfirlgl rnkpkktghv kpdlidvdlv
       61 rgsafakakp espwtsltrk givrvvffpf fyrwwlqvts rviffwllvl yllqvaavvl
      121 fytaqsphni pltevigpiw lmlllgtvhc qivstrtpkp ppstggkrrr skkaknsidk
      181 stetdngyvs ldgkktgkss eeciqaherr fevvkpeesg wstatmrdtf snhsrhkdth
      241 rtvtnlsdev sseegpetgy slrrnverts sdctlrnrks hhykkhyple dtpksgtscs
      301 srcsssrqds esarpesete dvlwedllhc aechsscsse tdvespqmnp cvkkeyrddp
      361 fhqshlpwih slnpglekis aivwegndck kadmsvleis gmimnrvnsy vpgigyqifg
      421 nvislilglm pfvfrlfqak dleqlathsa telcmtafgs ngdilvlsmv iisfvvrvsl
      481 vwifffllcv aertykqrll faklfghlts arrarksevp hfrlkkvqni kmwlslrsyl
      541 krrgpqrsvd vivssafllt isvvficcaq llhmheifld chynweliiw cisltlfllr
      601 fvtlgsetsk kysntsillt eqinlylkme kkpnkkdelt lvnnvlklat kllkeldspf
      661 rlygltmnpl lynitqvvil savsgvisdl lgfnlklwki ks
//
LOCUS       XP_053920234             425 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptotagmin-1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053920234
VERSION     XP_053920234.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064259.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..425
                     /product="synaptotagmin-1 isoform X1"
                     /calculated_mol_wt=47446
     Region          6..116
                     /region_name="Syt1_N"
                     /note="N-terminal domain of synaptotagmin-1 (Syt1) and
                     similar proteins; cd21963"
                     /db_xref="CDD:409248"
     Site            order(43,46..47,49..51,53..54)
                     /site_type="other"
                     /note="Botolinum neurotoxin B binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409248"
     Region          146..268
                     /region_name="C2A_Synaptotagmin-1-5-6-9-10"
                     /note="C2A domain first repeat present in Synaptotagmins
                     1, 5, 6, 9, and 10; cd08385"
                     /db_xref="CDD:176031"
     Site            order(176,182,234,236,242)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176031"
     Region          277..412
                     /region_name="C2B_Synaptotagmin-1"
                     /note="C2 domain second repeat present in Synaptotagmin 1;
                     cd08402"
                     /db_xref="CDD:176047"
     Site            order(307,313,367,369,375)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176047"
     CDS             1..425
                     /gene="SYT1"
                     /coded_by="XM_054064259.1:341..1618"
                     /db_xref="GeneID:104061153"
ORIGIN      
        1 mvseshheal aappattvaa appsnvtepa spggggggke dafsklkekf mnelnkiplp
       61 pwaliaiaiv avlliltccf clckkclfkk knkkkgkekg gknainmkdv kdlgktmkdq
      121 alkdddaetg ltdgeekeep keveklgkiq ysldydfqnn qllvgiiqaa elpaldmggt
      181 sdpyvkvfll pdkkkkyetk vhrktlnpvf neqftfkvpy selggktlvm avydfdrfsk
      241 hdiigeykva mntvdfghvt eewrdlqsae keeqeklgdi cfslryvpta gkltvvilea
      301 knlkkmdvgg lsdpyvkihl mqngkrlkkk kttikkntln pyynesfsfe vpfeqiqkvq
      361 ivvtvldydk igkndaigkv fvgynstgae lrhwsdmlan prrpiaqwht lqpeeevdam
      421 lavkk
//
LOCUS       XP_053920235             425 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptotagmin-1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053920235
VERSION     XP_053920235.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064260.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..425
                     /product="synaptotagmin-1 isoform X1"
                     /calculated_mol_wt=47446
     Region          6..116
                     /region_name="Syt1_N"
                     /note="N-terminal domain of synaptotagmin-1 (Syt1) and
                     similar proteins; cd21963"
                     /db_xref="CDD:409248"
     Site            order(43,46..47,49..51,53..54)
                     /site_type="other"
                     /note="Botolinum neurotoxin B binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409248"
     Region          146..268
                     /region_name="C2A_Synaptotagmin-1-5-6-9-10"
                     /note="C2A domain first repeat present in Synaptotagmins
                     1, 5, 6, 9, and 10; cd08385"
                     /db_xref="CDD:176031"
     Site            order(176,182,234,236,242)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176031"
     Region          277..412
                     /region_name="C2B_Synaptotagmin-1"
                     /note="C2 domain second repeat present in Synaptotagmin 1;
                     cd08402"
                     /db_xref="CDD:176047"
     Site            order(307,313,367,369,375)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176047"
     CDS             1..425
                     /gene="SYT1"
                     /coded_by="XM_054064260.1:339..1616"
                     /db_xref="GeneID:104061153"
ORIGIN      
        1 mvseshheal aappattvaa appsnvtepa spggggggke dafsklkekf mnelnkiplp
       61 pwaliaiaiv avlliltccf clckkclfkk knkkkgkekg gknainmkdv kdlgktmkdq
      121 alkdddaetg ltdgeekeep keveklgkiq ysldydfqnn qllvgiiqaa elpaldmggt
      181 sdpyvkvfll pdkkkkyetk vhrktlnpvf neqftfkvpy selggktlvm avydfdrfsk
      241 hdiigeykva mntvdfghvt eewrdlqsae keeqeklgdi cfslryvpta gkltvvilea
      301 knlkkmdvgg lsdpyvkihl mqngkrlkkk kttikkntln pyynesfsfe vpfeqiqkvq
      361 ivvtvldydk igkndaigkv fvgynstgae lrhwsdmlan prrpiaqwht lqpeeevdam
      421 lavkk
//
LOCUS       XP_053920236             425 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptotagmin-1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053920236
VERSION     XP_053920236.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064261.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..425
                     /product="synaptotagmin-1 isoform X1"
                     /calculated_mol_wt=47446
     Region          6..116
                     /region_name="Syt1_N"
                     /note="N-terminal domain of synaptotagmin-1 (Syt1) and
                     similar proteins; cd21963"
                     /db_xref="CDD:409248"
     Site            order(43,46..47,49..51,53..54)
                     /site_type="other"
                     /note="Botolinum neurotoxin B binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409248"
     Region          146..268
                     /region_name="C2A_Synaptotagmin-1-5-6-9-10"
                     /note="C2A domain first repeat present in Synaptotagmins
                     1, 5, 6, 9, and 10; cd08385"
                     /db_xref="CDD:176031"
     Site            order(176,182,234,236,242)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176031"
     Region          277..412
                     /region_name="C2B_Synaptotagmin-1"
                     /note="C2 domain second repeat present in Synaptotagmin 1;
                     cd08402"
                     /db_xref="CDD:176047"
     Site            order(307,313,367,369,375)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176047"
     CDS             1..425
                     /gene="SYT1"
                     /coded_by="XM_054064261.1:356..1633"
                     /db_xref="GeneID:104061153"
ORIGIN      
        1 mvseshheal aappattvaa appsnvtepa spggggggke dafsklkekf mnelnkiplp
       61 pwaliaiaiv avlliltccf clckkclfkk knkkkgkekg gknainmkdv kdlgktmkdq
      121 alkdddaetg ltdgeekeep keveklgkiq ysldydfqnn qllvgiiqaa elpaldmggt
      181 sdpyvkvfll pdkkkkyetk vhrktlnpvf neqftfkvpy selggktlvm avydfdrfsk
      241 hdiigeykva mntvdfghvt eewrdlqsae keeqeklgdi cfslryvpta gkltvvilea
      301 knlkkmdvgg lsdpyvkihl mqngkrlkkk kttikkntln pyynesfsfe vpfeqiqkvq
      361 ivvtvldydk igkndaigkv fvgynstgae lrhwsdmlan prrpiaqwht lqpeeevdam
      421 lavkk
//
LOCUS       XP_053920238             422 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptotagmin-1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053920238
VERSION     XP_053920238.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064263.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..422
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..422
                     /product="synaptotagmin-1 isoform X2"
                     /calculated_mol_wt=47134
     Region          6..116
                     /region_name="Syt1_N"
                     /note="N-terminal domain of synaptotagmin-1 (Syt1) and
                     similar proteins; cd21963"
                     /db_xref="CDD:409248"
     Site            order(43,46..47,49..51,53..54)
                     /site_type="other"
                     /note="Botolinum neurotoxin B binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409248"
     Region          143..265
                     /region_name="C2A_Synaptotagmin-1-5-6-9-10"
                     /note="C2A domain first repeat present in Synaptotagmins
                     1, 5, 6, 9, and 10; cd08385"
                     /db_xref="CDD:176031"
     Site            order(173,179,231,233,239)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176031"
     Region          274..409
                     /region_name="C2B_Synaptotagmin-1"
                     /note="C2 domain second repeat present in Synaptotagmin 1;
                     cd08402"
                     /db_xref="CDD:176047"
     Site            order(304,310,364,366,372)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176047"
     CDS             1..422
                     /gene="SYT1"
                     /coded_by="XM_054064263.1:342..1610"
                     /db_xref="GeneID:104061153"
ORIGIN      
        1 mvseshheal aappattvaa appsnvtepa spggggggke dafsklkekf mnelnkiplp
       61 pwaliaiaiv avlliltccf clckkclfkk knkkkgkekg gknainmkdv kdlgktmkdq
      121 dddaetgltd geekeepkev eklgkiqysl dydfqnnqll vgiiqaaelp aldmggtsdp
      181 yvkvfllpdk kkkyetkvhr ktlnpvfneq ftfkvpysel ggktlvmavy dfdrfskhdi
      241 igeykvamnt vdfghvteew rdlqsaekee qeklgdicfs lryvptagkl tvvileaknl
      301 kkmdvgglsd pyvkihlmqn gkrlkkkktt ikkntlnpyy nesfsfevpf eqiqkvqivv
      361 tvldydkigk ndaigkvfvg ynstgaelrh wsdmlanprr piaqwhtlqp eeevdamlav
      421 kk
//
LOCUS       XP_053920249            1518 aa            linear   VRT 09-MAR-2023
DEFINITION  meiosis inhibitor protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053920249
VERSION     XP_053920249.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064274.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1518
                     /product="meiosis inhibitor protein 1 isoform X1"
                     /calculated_mol_wt=167790
     Region          <1..>87
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     CDS             1..1518
                     /gene="MEI1"
                     /coded_by="XM_054064274.1:138..4694"
                     /db_xref="GeneID:104055534"
ORIGIN      
        1 mgeamgrgrg qissafpgts asqltsapsv slspkplcsp qsldspvskv spaslspkpl
       61 rspqnpqspk spqplissas plslfspvss islassaspl psllvllfpl spqapqpsis
      121 aafstsptfs aspvspaslv fsaspvssah lassasplps lpsllslpsf sclpsllslp
      181 sllrlpsfls lpslssfpsl pnlpslpslp rlynfpnlps fphpraglls aplpdgrhra
      241 gcaamaglca qhgqrglvpv wpplclpctl htlgdsgasl vrkrhvlthl rdtlasqamh
      301 vvqglasder gcwhligtll gllhtvedgs aldlvvevlv rlvvelksee ylrcildesq
      361 kelckmttmr gslptftllg kladaipgfp dvlvaehsnl vdhllmglmy pnegikaavc
      421 ylygklysss vgterlsahf eerlcgpfln tlgraqakel qinclgllke llksdhfvsi
      481 lmnnsnteee sktpdflege nplplvlkkl lltrdemlqa assdcmaavl ahspsryspa
      541 fihadvpefl feclssnsei liwsvyccll llteerlffs kchtvygies lmrslrdvlr
      601 lhnvelqkkg lllfaeilkr qpveiklftn rgvcmeaigv lmetvnncpv levvmeavra
      661 vaaflrkdhl ssppvpyeel qklleamlkr csdlcpplsr krraqddlfs vsqshsanrn
      721 lsrvpqrqgq lllntlesfn sacrlavefq sdpmaqenaf tapnseskdt lcnfsefllr
      781 icdslcipmv gnyleravsp svmevfvstl ntlftavphm rnkfskklas csfirltlel
      841 kdrfcsiqsn palnqacsnf lcslclslys asqkertssq eeremsellq kglpqlnysi
      901 aesllllaet pepfsldqpl fshqhcfill lyfaytledr fvpeeelfla irnfllsaqd
      961 lgdcppyvlr aalyllavcq dkgealdsrs lctirrilds lpdlslvyvh cplllkfflc
     1021 ypelmgrfgh qvlqlwfswe dykqteaeea gasdqlnssn pllpilksns silfilldlv
     1081 csstvevaqk vlmtlrtfle rnedilvcdl lrsqflqilq qllvesssas lqanrnlpvl
     1141 lsllflvqlr skgvreldst dfkllhqvsn lcgkcrpmdt dllqpclnfl ycslhqttpc
     1201 sqqraaavll snvsflellq kvlectwlws ppseplylsp edallcsgwl lvaslllyqh
     1261 ryntevhqtl sldltevlna vifrkkkpil llvsimqflr allrqnfsss llvivsknta
     1321 qsamqpqpsp qdaalqplat qkafllvvsl qnllvqvhlq kelllsqavv acmetlveyl
     1381 yvknknvalh vvsqpwhrfl lftildgdqk aflkpevlrl mtlflryqss niisqkeisq
     1441 ilqevaetnl adlpeatsha lhvflcqvqs shcqvepvqs gtiqtwlehl lqqrstcvkr
     1501 qdivclgsva vslshigd
//
LOCUS       XP_053920252            1220 aa            linear   VRT 09-MAR-2023
DEFINITION  meiosis inhibitor protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053920252
VERSION     XP_053920252.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064277.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1220
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1220
                     /product="meiosis inhibitor protein 1 isoform X2"
                     /calculated_mol_wt=137290
     CDS             1..1220
                     /gene="MEI1"
                     /coded_by="XM_054064277.1:434..4096"
                     /db_xref="GeneID:104055534"
ORIGIN      
        1 mhvvqglasd ergcwhligt llgllhtved gsaldlvvev lvrlvvelks eeylrcilde
       61 sqkelckmtt mrgslptftl lgkladaipg fpdvlvaehs nlvdhllmgl mypnegikaa
      121 vcylygklys ssvgterlsa hfeerlcgpf lntlgraqak elqinclgll kellksdhfv
      181 silmnnsnte eesktpdfle genplplvlk kllltrdeml qaassdcmaa vlahspsrys
      241 pafihadvpe flfeclssns eiliwsvycc llllteerlf fskchtvygi eslmrslrdv
      301 lrlhnvelqk kglllfaeil krqpveiklf tnrgvcmeai gvlmetvnnc pvlevvmeav
      361 ravaaflrkd hlssppvpye elqklleaml krcsdlcppl srkrraqddl fsvsqshsan
      421 rnlsrvpqrq gqlllntles fnsacrlave fqsdpmaqen aftapnsesk dtlcnfsefl
      481 lricdslcip mvgnylerav spsvmevfvs tlntlftavp hmrnkfskkl ascsfirltl
      541 elkdrfcsiq snpalnqacs nflcslclsl ysasqkerts sqeeremsel lqkglpqlny
      601 siaeslllla etpepfsldq plfshqhcfi lllyfaytle drfvpeeelf lairnfllsa
      661 qdlgdcppyv lraalyllav cqdkgealds rslctirril dslpdlslvy vhcplllkff
      721 lcypelmgrf ghqvlqlwfs wedykqteae eagasdqlns snpllpilks nssilfilld
      781 lvcsstveva qkvlmtlrtf lernedilvc dllrsqflqi lqqllvesss aslqanrnlp
      841 vllsllflvq lrskgvreld stdfkllhqv snlcgkcrpm dtdllqpcln flycslhqtt
      901 pcsqqraaav llsnvsflel lqkvlectwl wsppseplyl spedallcsg wllvasllly
      961 qhryntevhq tlsldltevl navifrkkkp illlvsimqf lrallrqnfs ssllvivskn
     1021 taqsamqpqp spqdaalqpl atqkafllvv slqnllvqvh lqkelllsqa vvacmetlve
     1081 ylyvknknva lhvvsqpwhr fllftildgd qkaflkpevl rlmtlflryq ssniisqkei
     1141 sqilqevaet nladlpeats halhvflcqv qsshcqvepv qsgtiqtwle hllqqrstcv
     1201 krqdivclgs vavslshigd
//
LOCUS       XP_009554911             612 aa            linear   VRT 09-MAR-2023
DEFINITION  X-ray repair cross-complementing protein 6 [Cuculus canorus].
ACCESSION   XP_009554911
VERSION     XP_009554911.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556616.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554911.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..612
                     /product="X-ray repair cross-complementing protein 6"
                     /calculated_mol_wt=70107
     Region          28..609
                     /region_name="ku70"
                     /note="ATP-dependent DNA helicase II, 70 kDa subunit
                     (ku70); TIGR00578"
                     /db_xref="CDD:273151"
     CDS             1..612
                     /gene="XRCC6"
                     /coded_by="XM_009556616.2:43..1881"
                     /db_xref="GeneID:104055490"
ORIGIN      
        1 msewgsfyrg egteeaeedg eneqqegeav atskfsgrds liflvdaska mfesegdget
       61 pfemtlqcir nvytskiiss drdllsvvfy gteknknvad fkhiyvlqel enpgakrvle
      121 ldqyrgdegr vlfretfghn adyslgealw acsnlfsdvr vrlshkriml ftnednphan
      181 dsakaklart racdlrdtgi ildlmhlkkp ggfdislfyr diinvaeded lgiqpeesgk
      241 lehlmkkvra ketkkrtlvr lnlylskdls lavgvynllq kaykpypvkl yretnepvkt
      301 ktrtfngktg slllpsdtkr aqtygnrqiv lekeeteelk rfdspglfli gfkplsmlkq
      361 hhhikpsqfl ypeeslvsgs ttlfnallik clekevmalc rytarrntpp rfvalvpqee
      421 evdeqkvqva ppgfhiiflp yaddkrnidf tekvpasqeq vdkmkeiiqk lrfkyrpdsf
      481 enpvlqqhfr nlealaldmm epeqaedltm pkveemnrrl gnlveefkel vyppdynpeg
      541 kavkrkqasd gqtekkpkve iskdelrshv qkdtlgrltv pvlkeacric glkgegrkqe
      601 lmnaltkyfn eh
//
LOCUS       XP_053920268             229 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 134 [Cuculus canorus].
ACCESSION   XP_053920268
VERSION     XP_053920268.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064293.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..229
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..229
                     /product="coiled-coil domain-containing protein 134"
                     /calculated_mol_wt=26411
     Region          29..185
                     /region_name="ERK-JNK_inhib"
                     /note="ERK and JNK pathways, inhibitor; pfam15002"
                     /db_xref="CDD:464435"
     CDS             1..229
                     /gene="CCDC134"
                     /coded_by="XM_054064293.1:288..977"
                     /db_xref="GeneID:104055489"
ORIGIN      
        1 mdfllicpfv lvlllsrgsf adlekqkvds gleiykklfe vkrkdqmnal knlielndin
       61 qqykiidiml kglfkvleds ravliaadvp pdgpfpqdek ikdayshvie ntaffgdvvl
      121 rfpkivhhyf drnsnwnsli rwgigfcnlt gvfeqgphsq vlglmaqelg isekspdyhn
      181 pfktdhseff psadtfqkal reeekrrkke ekrkeirkgp risrsqsel
//
LOCUS       XP_053920277             128 aa            linear   VRT 09-MAR-2023
DEFINITION  NHP2-like protein 1 [Cuculus canorus].
ACCESSION   XP_053920277
VERSION     XP_053920277.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064302.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..128
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..128
                     /product="NHP2-like protein 1"
                     /calculated_mol_wt=13957
     Region          7..128
                     /region_name="SNU13"
                     /note="U4/U6.U5 small nuclear ribonucleoprotein SNU13;
                     cd21104"
                     /db_xref="CDD:411046"
     Site            order(36..41,44,48,60..61,65,86,95..100)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:411046"
     Site            order(40,43..44,47,62,64..65,67..68,71)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:411046"
     CDS             1..128
                     /gene="SNU13"
                     /coded_by="XM_054064302.1:132..518"
                     /db_xref="GeneID:104055535"
ORIGIN      
        1 mteaevnpka ypladaqltk tlldlvqqsc nykqlrkgan eatktlnrgi aefivmaada
       61 epleiilhlp llcedknvpy vfvrskqalg racgvsrpvi acsitikegs qlkpqiqsvq
      121 qaierllv
//
LOCUS       XP_009559396             902 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor 4 isoform X1 [Cuculus canorus].
ACCESSION   XP_009559396
VERSION     XP_009559396.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009561101.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..902
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..902
                     /product="glutamate receptor 4 isoform X1"
                     /calculated_mol_wt=100846
     Region          28..400
                     /region_name="PBP1_iGluR_AMPA_GluR4"
                     /note="N-terminal leucine-isoleucine-valine binding
                     protein (LIVBP)-like domain of the GluR4 subunit of the
                     AMPA receptor; cd06388"
                     /db_xref="CDD:380611"
     Site            order(75..77,80..81,84,109,112,158,168,171..172,175..176,
                     183,185,200,330..332,334,336)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:380611"
     Site            order(76..77,84,109,113,158,164,168,171..172,174..176,
                     181..182,184,204,331..335)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:380611"
     Region          414..795
                     /region_name="PBP2_iGluR_AMPA"
                     /note="The ligand-binding domain of the AMPA
                     (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic
                     acid) subtypes of ionotropic glutamate receptors, a member
                     of the type 2 periplasmic binding fold protein
                     superfamily; cd13715"
                     /db_xref="CDD:270433"
     Site            order(453,457,504..505,508,513..516,751,769..770,773..778,
                     780,783)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:270433"
     Site            order(472,500..502,507,672,675..677,726..727,730,754)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:270433"
     Site            order(515..519,773,776,781..782,785)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:270433"
     CDS             1..902
                     /gene="GRIA4"
                     /coded_by="XM_009561101.2:410..3118"
                     /db_xref="GeneID:104059428"
ORIGIN      
        1 mriicrqlvl lfsgfwglam gafpssvqig glfirntdqe ytafrlaifl hntspnasea
       61 pfnlvphvdn ietansfavt nafcsqysrg vfaifglydk rsvhtltsfc salhislitp
      121 sfptegesqf vlqlrpslrg allslldhye wnrfvflydt drgysilqai mekagqnswq
      181 vsaicvenfn dasyrrlled ldrrqekkfv idceierlqn lleqivsvgk hvkgyhyiva
      241 nlgfkdisle rfmhgganvt gfqlvdfstp mvtklmqrwk kldqreypgs etppkytsal
      301 tydgvlvmae tfrnlrrqki disrrgnagd clanpaapwg qgidmertlk qvriqgltgn
      361 vqfdhygrrv nytmdvfelk ntgprkvgyw ndmdklvliq heptlgndts aienrtvvvt
      421 tileapyvmf kknhdtfegn dkfegycvdl aseiakhigi kykiaivpdg kygardpetk
      481 iwngmvgelv ygkaeiavap ltitlvreev idfskpfmsl gisimikkpq kskpgvfsfl
      541 dplayeiwmc ivfayigvsv vlflvsrfsp yewhteeped gkegpsdqpp nefgifnslw
      601 fslgafmqqg cdisprslsg rivggvwwff tliiissyta nlaafltver mvspiesaed
      661 lakqteiayg tldsgstkef frrskiavye kmwtymksae psvftrttae gvarvrkskg
      721 kfafllestm neyieqrkpc dtmkvggnld skgygvatpk gsplrtpvnl avlklseagv
      781 ldklknkwwy dkgecgpkds gskdktsals lsnvagvfyi lvgglglaml valiefcyks
      841 raeakrmklt fseairnkar lsitgsvgen grvltpdcpk amhtgtairq ssglaviasd
      901 lp
//
LOCUS       XP_009559397             902 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_009559397
VERSION     XP_009559397.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009561102.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..902
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..902
                     /product="glutamate receptor 4 isoform X2"
                     /calculated_mol_wt=100820
     Region          28..400
                     /region_name="PBP1_iGluR_AMPA_GluR4"
                     /note="N-terminal leucine-isoleucine-valine binding
                     protein (LIVBP)-like domain of the GluR4 subunit of the
                     AMPA receptor; cd06388"
                     /db_xref="CDD:380611"
     Site            order(75..77,80..81,84,109,112,158,168,171..172,175..176,
                     183,185,200,330..332,334,336)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:380611"
     Site            order(76..77,84,109,113,158,164,168,171..172,174..176,
                     181..182,184,204,331..335)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:380611"
     Region          414..795
                     /region_name="PBP2_iGluR_AMPA"
                     /note="The ligand-binding domain of the AMPA
                     (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic
                     acid) subtypes of ionotropic glutamate receptors, a member
                     of the type 2 periplasmic binding fold protein
                     superfamily; cd13715"
                     /db_xref="CDD:270433"
     Site            order(453,457,504..505,508,513..516,751,769..770,773..778,
                     780,783)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:270433"
     Site            order(472,500..502,507,672,675..677,726..727,730,754)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:270433"
     Site            order(515..519,773,776,781..782,785)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:270433"
     CDS             1..902
                     /gene="GRIA4"
                     /coded_by="XM_009561102.2:410..3118"
                     /db_xref="GeneID:104059428"
ORIGIN      
        1 mriicrqlvl lfsgfwglam gafpssvqig glfirntdqe ytafrlaifl hntspnasea
       61 pfnlvphvdn ietansfavt nafcsqysrg vfaifglydk rsvhtltsfc salhislitp
      121 sfptegesqf vlqlrpslrg allslldhye wnrfvflydt drgysilqai mekagqnswq
      181 vsaicvenfn dasyrrlled ldrrqekkfv idceierlqn lleqivsvgk hvkgyhyiva
      241 nlgfkdisle rfmhgganvt gfqlvdfstp mvtklmqrwk kldqreypgs etppkytsal
      301 tydgvlvmae tfrnlrrqki disrrgnagd clanpaapwg qgidmertlk qvriqgltgn
      361 vqfdhygrrv nytmdvfelk ntgprkvgyw ndmdklvliq heptlgndts aienrtvvvt
      421 tileapyvmf kknhdtfegn dkfegycvdl aseiakhigi kykiaivpdg kygardpetk
      481 iwngmvgelv ygkaeiavap ltitlvreev idfskpfmsl gisimikkpq kskpgvfsfl
      541 dplayeiwmc ivfayigvsv vlflvsrfsp yewhteeped gkegpsdqpp nefgifnslw
      601 fslgafmqqg cdisprslsg rivggvwwff tliiissyta nlaafltver mvspiesaed
      661 lakqteiayg tldsgstkef frrskiavye kmwtymksae psvftrttae gvarvrkskg
      721 kfafllestm neyieqrkpc dtmkvggnld skgygvatpk gsplrnavnl avlklneqgl
      781 ldklknkwwy dkgecgsggg dskdktsals lsnvagvfyi lvgglglaml valiefcyks
      841 raeakrmklt fseairnkar lsitgsvgen grvltpdcpk amhtgtairq ssglaviasd
      901 lp
//
LOCUS       XP_053920306             884 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor 4 isoform X3 [Cuculus canorus].
ACCESSION   XP_053920306
VERSION     XP_053920306.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064331.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..884
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..884
                     /product="glutamate receptor 4 isoform X3"
                     /calculated_mol_wt=99219
     Region          28..400
                     /region_name="PBP1_iGluR_AMPA_GluR4"
                     /note="N-terminal leucine-isoleucine-valine binding
                     protein (LIVBP)-like domain of the GluR4 subunit of the
                     AMPA receptor; cd06388"
                     /db_xref="CDD:380611"
     Site            order(75..77,80..81,84,109,112,158,168,171..172,175..176,
                     183,185,200,330..332,334,336)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:380611"
     Site            order(76..77,84,109,113,158,164,168,171..172,174..176,
                     181..182,184,204,331..335)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:380611"
     Region          414..795
                     /region_name="PBP2_iGluR_AMPA"
                     /note="The ligand-binding domain of the AMPA
                     (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic
                     acid) subtypes of ionotropic glutamate receptors, a member
                     of the type 2 periplasmic binding fold protein
                     superfamily; cd13715"
                     /db_xref="CDD:270433"
     Site            order(453,457,504..505,508,513..516,751,769..770,773..778,
                     780,783)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:270433"
     Site            order(472,500..502,507,672,675..677,726..727,730,754)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:270433"
     Site            order(515..519,773,776,781..782,785)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:270433"
     CDS             1..884
                     /gene="GRIA4"
                     /coded_by="XM_054064331.1:411..3065"
                     /db_xref="GeneID:104059428"
ORIGIN      
        1 mriicrqlvl lfsgfwglam gafpssvqig glfirntdqe ytafrlaifl hntspnasea
       61 pfnlvphvdn ietansfavt nafcsqysrg vfaifglydk rsvhtltsfc salhislitp
      121 sfptegesqf vlqlrpslrg allslldhye wnrfvflydt drgysilqai mekagqnswq
      181 vsaicvenfn dasyrrlled ldrrqekkfv idceierlqn lleqivsvgk hvkgyhyiva
      241 nlgfkdisle rfmhgganvt gfqlvdfstp mvtklmqrwk kldqreypgs etppkytsal
      301 tydgvlvmae tfrnlrrqki disrrgnagd clanpaapwg qgidmertlk qvriqgltgn
      361 vqfdhygrrv nytmdvfelk ntgprkvgyw ndmdklvliq heptlgndts aienrtvvvt
      421 tileapyvmf kknhdtfegn dkfegycvdl aseiakhigi kykiaivpdg kygardpetk
      481 iwngmvgelv ygkaeiavap ltitlvreev idfskpfmsl gisimikkpq kskpgvfsfl
      541 dplayeiwmc ivfayigvsv vlflvsrfsp yewhteeped gkegpsdqpp nefgifnslw
      601 fslgafmqqg cdisprslsg rivggvwwff tliiissyta nlaafltver mvspiesaed
      661 lakqteiayg tldsgstkef frrskiavye kmwtymksae psvftrttae gvarvrkskg
      721 kfafllestm neyieqrkpc dtmkvggnld skgygvatpk gsplrtpvnl avlklseagv
      781 ldklknkwwy dkgecgpkds gskdktsals lsnvagvfyi lvgglglaml valiefcyks
      841 raeakrmkva ksaqtfnpts sqntqnlaty regynvygte siki
//
LOCUS       XP_053920315             884 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor 4 isoform X4 [Cuculus canorus].
ACCESSION   XP_053920315
VERSION     XP_053920315.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064340.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..884
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..884
                     /product="glutamate receptor 4 isoform X4"
                     /calculated_mol_wt=99193
     Region          28..400
                     /region_name="PBP1_iGluR_AMPA_GluR4"
                     /note="N-terminal leucine-isoleucine-valine binding
                     protein (LIVBP)-like domain of the GluR4 subunit of the
                     AMPA receptor; cd06388"
                     /db_xref="CDD:380611"
     Site            order(75..77,80..81,84,109,112,158,168,171..172,175..176,
                     183,185,200,330..332,334,336)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:380611"
     Site            order(76..77,84,109,113,158,164,168,171..172,174..176,
                     181..182,184,204,331..335)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:380611"
     Region          414..795
                     /region_name="PBP2_iGluR_AMPA"
                     /note="The ligand-binding domain of the AMPA
                     (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic
                     acid) subtypes of ionotropic glutamate receptors, a member
                     of the type 2 periplasmic binding fold protein
                     superfamily; cd13715"
                     /db_xref="CDD:270433"
     Site            order(453,457,504..505,508,513..516,751,769..770,773..778,
                     780,783)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:270433"
     Site            order(472,500..502,507,672,675..677,726..727,730,754)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:270433"
     Site            order(515..519,773,776,781..782,785)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:270433"
     CDS             1..884
                     /gene="GRIA4"
                     /coded_by="XM_054064340.1:411..3065"
                     /db_xref="GeneID:104059428"
ORIGIN      
        1 mriicrqlvl lfsgfwglam gafpssvqig glfirntdqe ytafrlaifl hntspnasea
       61 pfnlvphvdn ietansfavt nafcsqysrg vfaifglydk rsvhtltsfc salhislitp
      121 sfptegesqf vlqlrpslrg allslldhye wnrfvflydt drgysilqai mekagqnswq
      181 vsaicvenfn dasyrrlled ldrrqekkfv idceierlqn lleqivsvgk hvkgyhyiva
      241 nlgfkdisle rfmhgganvt gfqlvdfstp mvtklmqrwk kldqreypgs etppkytsal
      301 tydgvlvmae tfrnlrrqki disrrgnagd clanpaapwg qgidmertlk qvriqgltgn
      361 vqfdhygrrv nytmdvfelk ntgprkvgyw ndmdklvliq heptlgndts aienrtvvvt
      421 tileapyvmf kknhdtfegn dkfegycvdl aseiakhigi kykiaivpdg kygardpetk
      481 iwngmvgelv ygkaeiavap ltitlvreev idfskpfmsl gisimikkpq kskpgvfsfl
      541 dplayeiwmc ivfayigvsv vlflvsrfsp yewhteeped gkegpsdqpp nefgifnslw
      601 fslgafmqqg cdisprslsg rivggvwwff tliiissyta nlaafltver mvspiesaed
      661 lakqteiayg tldsgstkef frrskiavye kmwtymksae psvftrttae gvarvrkskg
      721 kfafllestm neyieqrkpc dtmkvggnld skgygvatpk gsplrnavnl avlklneqgl
      781 ldklknkwwy dkgecgsggg dskdktsals lsnvagvfyi lvgglglaml valiefcyks
      841 raeakrmkva ksaqtfnpts sqntqnlaty regynvygte siki
//
LOCUS       XP_053920319             884 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor 4 isoform X3 [Cuculus canorus].
ACCESSION   XP_053920319
VERSION     XP_053920319.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064344.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..884
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..884
                     /product="glutamate receptor 4 isoform X3"
                     /calculated_mol_wt=99219
     Region          28..400
                     /region_name="PBP1_iGluR_AMPA_GluR4"
                     /note="N-terminal leucine-isoleucine-valine binding
                     protein (LIVBP)-like domain of the GluR4 subunit of the
                     AMPA receptor; cd06388"
                     /db_xref="CDD:380611"
     Site            order(75..77,80..81,84,109,112,158,168,171..172,175..176,
                     183,185,200,330..332,334,336)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:380611"
     Site            order(76..77,84,109,113,158,164,168,171..172,174..176,
                     181..182,184,204,331..335)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:380611"
     Region          414..795
                     /region_name="PBP2_iGluR_AMPA"
                     /note="The ligand-binding domain of the AMPA
                     (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic
                     acid) subtypes of ionotropic glutamate receptors, a member
                     of the type 2 periplasmic binding fold protein
                     superfamily; cd13715"
                     /db_xref="CDD:270433"
     Site            order(453,457,504..505,508,513..516,751,769..770,773..778,
                     780,783)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:270433"
     Site            order(472,500..502,507,672,675..677,726..727,730,754)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:270433"
     Site            order(515..519,773,776,781..782,785)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:270433"
     CDS             1..884
                     /gene="GRIA4"
                     /coded_by="XM_054064344.1:411..3065"
                     /db_xref="GeneID:104059428"
ORIGIN      
        1 mriicrqlvl lfsgfwglam gafpssvqig glfirntdqe ytafrlaifl hntspnasea
       61 pfnlvphvdn ietansfavt nafcsqysrg vfaifglydk rsvhtltsfc salhislitp
      121 sfptegesqf vlqlrpslrg allslldhye wnrfvflydt drgysilqai mekagqnswq
      181 vsaicvenfn dasyrrlled ldrrqekkfv idceierlqn lleqivsvgk hvkgyhyiva
      241 nlgfkdisle rfmhgganvt gfqlvdfstp mvtklmqrwk kldqreypgs etppkytsal
      301 tydgvlvmae tfrnlrrqki disrrgnagd clanpaapwg qgidmertlk qvriqgltgn
      361 vqfdhygrrv nytmdvfelk ntgprkvgyw ndmdklvliq heptlgndts aienrtvvvt
      421 tileapyvmf kknhdtfegn dkfegycvdl aseiakhigi kykiaivpdg kygardpetk
      481 iwngmvgelv ygkaeiavap ltitlvreev idfskpfmsl gisimikkpq kskpgvfsfl
      541 dplayeiwmc ivfayigvsv vlflvsrfsp yewhteeped gkegpsdqpp nefgifnslw
      601 fslgafmqqg cdisprslsg rivggvwwff tliiissyta nlaafltver mvspiesaed
      661 lakqteiayg tldsgstkef frrskiavye kmwtymksae psvftrttae gvarvrkskg
      721 kfafllestm neyieqrkpc dtmkvggnld skgygvatpk gsplrtpvnl avlklseagv
      781 ldklknkwwy dkgecgpkds gskdktsals lsnvagvfyi lvgglglaml valiefcyks
      841 raeakrmkva ksaqtfnpts sqntqnlaty regynvygte siki
//
LOCUS       XP_053920324             814 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor 4 isoform X5 [Cuculus canorus].
ACCESSION   XP_053920324
VERSION     XP_053920324.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064349.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..814
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..814
                     /product="glutamate receptor 4 isoform X5"
                     /calculated_mol_wt=91706
     Region          28..400
                     /region_name="PBP1_iGluR_AMPA_GluR4"
                     /note="N-terminal leucine-isoleucine-valine binding
                     protein (LIVBP)-like domain of the GluR4 subunit of the
                     AMPA receptor; cd06388"
                     /db_xref="CDD:380611"
     Site            order(75..77,80..81,84,109,112,158,168,171..172,175..176,
                     183,185,200,330..332,334,336)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:380611"
     Site            order(76..77,84,109,113,158,164,168,171..172,174..176,
                     181..182,184,204,331..335)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:380611"
     Region          414..795
                     /region_name="PBP2_iGluR_AMPA"
                     /note="The ligand-binding domain of the AMPA
                     (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic
                     acid) subtypes of ionotropic glutamate receptors, a member
                     of the type 2 periplasmic binding fold protein
                     superfamily; cd13715"
                     /db_xref="CDD:270433"
     Site            order(453,457,504..505,508,513..516,751,769..770,773..778,
                     780,783)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:270433"
     Site            order(472,500..502,507,672,675..677,726..727,730,754)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:270433"
     Site            order(515..519,773,776,781..782,785)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:270433"
     CDS             1..814
                     /gene="GRIA4"
                     /coded_by="XM_054064349.1:410..2854"
                     /db_xref="GeneID:104059428"
ORIGIN      
        1 mriicrqlvl lfsgfwglam gafpssvqig glfirntdqe ytafrlaifl hntspnasea
       61 pfnlvphvdn ietansfavt nafcsqysrg vfaifglydk rsvhtltsfc salhislitp
      121 sfptegesqf vlqlrpslrg allslldhye wnrfvflydt drgysilqai mekagqnswq
      181 vsaicvenfn dasyrrlled ldrrqekkfv idceierlqn lleqivsvgk hvkgyhyiva
      241 nlgfkdisle rfmhgganvt gfqlvdfstp mvtklmqrwk kldqreypgs etppkytsal
      301 tydgvlvmae tfrnlrrqki disrrgnagd clanpaapwg qgidmertlk qvriqgltgn
      361 vqfdhygrrv nytmdvfelk ntgprkvgyw ndmdklvliq heptlgndts aienrtvvvt
      421 tileapyvmf kknhdtfegn dkfegycvdl aseiakhigi kykiaivpdg kygardpetk
      481 iwngmvgelv ygkaeiavap ltitlvreev idfskpfmsl gisimikkpq kskpgvfsfl
      541 dplayeiwmc ivfayigvsv vlflvsrfsp yewhteeped gkegpsdqpp nefgifnslw
      601 fslgafmqqg cdisprslsg rivggvwwff tliiissyta nlaafltver mvspiesaed
      661 lakqteiayg tldsgstkef frrskiavye kmwtymksae psvftrttae gvarvrkskg
      721 kfafllestm neyieqrkpc dtmkvggnld skgygvatpk gsplrnavnl avlklneqgl
      781 ldklknkwwy dkgecgsggg dsknsckpcr fetq
//
LOCUS       XP_053920328             771 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor 4 isoform X6 [Cuculus canorus].
ACCESSION   XP_053920328
VERSION     XP_053920328.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064353.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..771
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..771
                     /product="glutamate receptor 4 isoform X6"
                     /calculated_mol_wt=86906
     Region          28..400
                     /region_name="PBP1_iGluR_AMPA_GluR4"
                     /note="N-terminal leucine-isoleucine-valine binding
                     protein (LIVBP)-like domain of the GluR4 subunit of the
                     AMPA receptor; cd06388"
                     /db_xref="CDD:380611"
     Site            order(75..77,80..81,84,109,112,158,168,171..172,175..176,
                     183,185,200,330..332,334,336)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:380611"
     Site            order(76..77,84,109,113,158,164,168,171..172,174..176,
                     181..182,184,204,331..335)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:380611"
     Region          414..764
                     /region_name="PBP2_iGluR_AMPA"
                     /note="The ligand-binding domain of the AMPA
                     (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic
                     acid) subtypes of ionotropic glutamate receptors, a member
                     of the type 2 periplasmic binding fold protein
                     superfamily; cd13715"
                     /db_xref="CDD:270433"
     Site            order(472,500..502,507,672,675..677,726..727,730,754)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:270433"
     CDS             1..771
                     /gene="GRIA4"
                     /coded_by="XM_054064353.1:410..2725"
                     /db_xref="GeneID:104059428"
ORIGIN      
        1 mriicrqlvl lfsgfwglam gafpssvqig glfirntdqe ytafrlaifl hntspnasea
       61 pfnlvphvdn ietansfavt nafcsqysrg vfaifglydk rsvhtltsfc salhislitp
      121 sfptegesqf vlqlrpslrg allslldhye wnrfvflydt drgysilqai mekagqnswq
      181 vsaicvenfn dasyrrlled ldrrqekkfv idceierlqn lleqivsvgk hvkgyhyiva
      241 nlgfkdisle rfmhgganvt gfqlvdfstp mvtklmqrwk kldqreypgs etppkytsal
      301 tydgvlvmae tfrnlrrqki disrrgnagd clanpaapwg qgidmertlk qvriqgltgn
      361 vqfdhygrrv nytmdvfelk ntgprkvgyw ndmdklvliq heptlgndts aienrtvvvt
      421 tileapyvmf kknhdtfegn dkfegycvdl aseiakhigi kykiaivpdg kygardpetk
      481 iwngmvgelv ygkaeiavap ltitlvreev idfskpfmsl gisimikkpq kskpgvfsfl
      541 dplayeiwmc ivfayigvsv vlflvsrfsp yewhteeped gkegpsdqpp nefgifnslw
      601 fslgafmqqg cdisprslsg rivggvwwff tliiissyta nlaafltver mvspiesaed
      661 lakqteiayg tldsgstkef frrskiavye kmwtymksae psvftrttae gvarvrkskg
      721 kfafllestm neyieqrkpc dtmkvggnld skgygvatpk gsplslpflk p
//
LOCUS       XP_053920336             732 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor 4 isoform X7 [Cuculus canorus].
ACCESSION   XP_053920336
VERSION     XP_053920336.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064361.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..732
                     /product="glutamate receptor 4 isoform X7"
                     /calculated_mol_wt=81738
     Region          <1..230
                     /region_name="Periplasmic_Binding_Protein_type1"
                     /note="Type 1 periplasmic binding fold superfamily;
                     cl10011"
                     /db_xref="CDD:471960"
     Region          244..625
                     /region_name="PBP2_iGluR_AMPA"
                     /note="The ligand-binding domain of the AMPA
                     (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic
                     acid) subtypes of ionotropic glutamate receptors, a member
                     of the type 2 periplasmic binding fold protein
                     superfamily; cd13715"
                     /db_xref="CDD:270433"
     Site            order(283,287,334..335,338,343..346,581,599..600,603..608,
                     610,613)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:270433"
     Site            order(302,330..332,337,502,505..507,556..557,560,584)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:270433"
     Site            order(345..349,603,606,611..612,615)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:270433"
     CDS             1..732
                     /gene="GRIA4"
                     /coded_by="XM_054064361.1:560..2758"
                     /db_xref="GeneID:104059428"
ORIGIN      
        1 mekagqnswq vsaicvenfn dasyrrlled ldrrqekkfv idceierlqn lleqivsvgk
       61 hvkgyhyiva nlgfkdisle rfmhgganvt gfqlvdfstp mvtklmqrwk kldqreypgs
      121 etppkytsal tydgvlvmae tfrnlrrqki disrrgnagd clanpaapwg qgidmertlk
      181 qvriqgltgn vqfdhygrrv nytmdvfelk ntgprkvgyw ndmdklvliq heptlgndts
      241 aienrtvvvt tileapyvmf kknhdtfegn dkfegycvdl aseiakhigi kykiaivpdg
      301 kygardpetk iwngmvgelv ygkaeiavap ltitlvreev idfskpfmsl gisimikkpq
      361 kskpgvfsfl dplayeiwmc ivfayigvsv vlflvsrfsp yewhteeped gkegpsdqpp
      421 nefgifnslw fslgafmqqg cdisprslsg rivggvwwff tliiissyta nlaafltver
      481 mvspiesaed lakqteiayg tldsgstkef frrskiavye kmwtymksae psvftrttae
      541 gvarvrkskg kfafllestm neyieqrkpc dtmkvggnld skgygvatpk gsplrtpvnl
      601 avlklseagv ldklknkwwy dkgecgpkds gskdktsals lsnvagvfyi lvgglglaml
      661 valiefcyks raeakrmklt fseairnkar lsitgsvgen grvltpdcpk amhtgtairq
      721 ssglaviasd lp
//
LOCUS       XP_053920342             732 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor 4 isoform X7 [Cuculus canorus].
ACCESSION   XP_053920342
VERSION     XP_053920342.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064367.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..732
                     /product="glutamate receptor 4 isoform X7"
                     /calculated_mol_wt=81738
     Region          <1..230
                     /region_name="Periplasmic_Binding_Protein_type1"
                     /note="Type 1 periplasmic binding fold superfamily;
                     cl10011"
                     /db_xref="CDD:471960"
     Region          244..625
                     /region_name="PBP2_iGluR_AMPA"
                     /note="The ligand-binding domain of the AMPA
                     (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic
                     acid) subtypes of ionotropic glutamate receptors, a member
                     of the type 2 periplasmic binding fold protein
                     superfamily; cd13715"
                     /db_xref="CDD:270433"
     Site            order(283,287,334..335,338,343..346,581,599..600,603..608,
                     610,613)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:270433"
     Site            order(302,330..332,337,502,505..507,556..557,560,584)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:270433"
     Site            order(345..349,603,606,611..612,615)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:270433"
     CDS             1..732
                     /gene="GRIA4"
                     /coded_by="XM_054064367.1:382..2580"
                     /db_xref="GeneID:104059428"
ORIGIN      
        1 mekagqnswq vsaicvenfn dasyrrlled ldrrqekkfv idceierlqn lleqivsvgk
       61 hvkgyhyiva nlgfkdisle rfmhgganvt gfqlvdfstp mvtklmqrwk kldqreypgs
      121 etppkytsal tydgvlvmae tfrnlrrqki disrrgnagd clanpaapwg qgidmertlk
      181 qvriqgltgn vqfdhygrrv nytmdvfelk ntgprkvgyw ndmdklvliq heptlgndts
      241 aienrtvvvt tileapyvmf kknhdtfegn dkfegycvdl aseiakhigi kykiaivpdg
      301 kygardpetk iwngmvgelv ygkaeiavap ltitlvreev idfskpfmsl gisimikkpq
      361 kskpgvfsfl dplayeiwmc ivfayigvsv vlflvsrfsp yewhteeped gkegpsdqpp
      421 nefgifnslw fslgafmqqg cdisprslsg rivggvwwff tliiissyta nlaafltver
      481 mvspiesaed lakqteiayg tldsgstkef frrskiavye kmwtymksae psvftrttae
      541 gvarvrkskg kfafllestm neyieqrkpc dtmkvggnld skgygvatpk gsplrtpvnl
      601 avlklseagv ldklknkwwy dkgecgpkds gskdktsals lsnvagvfyi lvgglglaml
      661 valiefcyks raeakrmklt fseairnkar lsitgsvgen grvltpdcpk amhtgtairq
      721 ssglaviasd lp
//
LOCUS       XP_009559398             433 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor 4 isoform X8 [Cuculus canorus].
ACCESSION   XP_009559398
VERSION     XP_009559398.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009561103.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..433
                     /product="glutamate receptor 4 isoform X8"
                     /calculated_mol_wt=49174
     Region          28..400
                     /region_name="Periplasmic_Binding_Protein_type1"
                     /note="Type 1 periplasmic binding fold superfamily;
                     cl10011"
                     /db_xref="CDD:471960"
     CDS             1..433
                     /gene="GRIA4"
                     /coded_by="XM_009561103.2:401..1702"
                     /db_xref="GeneID:104059428"
ORIGIN      
        1 mriicrqlvl lfsgfwglam gafpssvqig glfirntdqe ytafrlaifl hntspnasea
       61 pfnlvphvdn ietansfavt nafcsqysrg vfaifglydk rsvhtltsfc salhislitp
      121 sfptegesqf vlqlrpslrg allslldhye wnrfvflydt drgysilqai mekagqnswq
      181 vsaicvenfn dasyrrlled ldrrqekkfv idceierlqn lleqivsvgk hvkgyhyiva
      241 nlgfkdisle rfmhgganvt gfqlvdfstp mvtklmqrwk kldqreypgs etppkytsal
      301 tydgvlvmae tfrnlrrqki disrrgnagd clanpaapwg qgidmertlk qvriqgltgn
      361 vqfdhygrrv nytmdvfelk ntgprkvgyw ndmdklvliq heptlgndts aienrtvvvt
      421 tilplmknpi lrn
//
LOCUS       XP_053920366            1999 aa            linear   VRT 09-MAR-2023
DEFINITION  trinucleotide repeat-containing gene 6B protein isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053920366
VERSION     XP_053920366.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064391.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1999
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1999
                     /product="trinucleotide repeat-containing gene 6B protein
                     isoform X1"
                     /calculated_mol_wt=212818
     Region          <317..675
                     /region_name="MSCRAMM_ClfA"
                     /note="MSCRAMM family adhesin clumping factor ClfA;
                     NF033609"
                     /db_xref="CDD:468110"
     Region          <529..>790
                     /region_name="ser_rich_anae_1"
                     /note="serine-rich protein; NF033849"
                     /db_xref="CDD:468206"
     Region          1119..1254
                     /region_name="Ago_hook"
                     /note="Argonaute hook; pfam10427"
                     /db_xref="CDD:463088"
     Region          1514..1768
                     /region_name="TNRC6-PABC_bdg"
                     /note="TNRC6-PABC binding domain; pfam16608"
                     /db_xref="CDD:465195"
     Region          1812..1894
                     /region_name="RRM_TNRC6B"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6B protein (TNRC6B);
                     cd12712"
                     /db_xref="CDD:410111"
     CDS             1..1999
                     /gene="TNRC6B"
                     /coded_by="XM_054064391.1:127..6126"
                     /db_xref="GeneID:104055510"
ORIGIN      
        1 mgsangqgft vidvggsqwa krsathlptg sasgrgfsvt dvrgsqwagr srkrlpmgta
       61 lgrgrwrrrq tsgrrgqsar grarrgpmgg aeafpgsrfp raggaapgte kkapqrflgp
      121 yvllrswvna lisflncgpe lkgfrfctec sqdrsswala algncqrqyf aflqsfaqil
      181 fpcklmreky wrkavprsvr ekeqereeql medkkrkked kkkkesaqkv tdqktkvpev
      241 tkpslsqpva aspignspsp pvnggnnakr vavpngqpps aarymprevp prfrcqqdhk
      301 vllkrgqppp pscmllggga gppspaapga npnnaqpvtg allqsdsgta tdsaiggaaa
      361 snyanstwgp gassnsgtna npthiwdkvi vdgsdmeewp ciaskdaess senttdnnsa
      421 snpgleknal pgsttsnkgk gsqcqsgsag necnlgawks dpkaksvqss npaaesnngl
      481 gnwrnlsgqe rigsgsgfsn fnpnsnpsaw palvqegssr kgtlesdsgs snaqistvgq
      541 tsreqqskme nagvnfvsgr eqaqihntdg pkngntnsln lsspnpmdnk gmpfemglgn
      601 psrstdtpsq stgerktgsv gswgttrgss gtdtvsgqsn sgnhgnngkd redswkgasv
      661 qksngsrsds wdnnnrstgg ggswnfgpqh aneskwgegn kltsgvsqge wkqlsgsdel
      721 kigewsgpnq pnsstgawdn qkghplpenq gnsqapcwgr ssssagsevg gqstgsnhka
      781 gssdshnsgr rsyrpthpdc qavlqtllsr tdldprvlsn tgwgqtqikq dtvwdieemp
      841 rpegksdkgt egwessatqt knsggwgdvp sqsnqiksgw gelstptewk dpkntggwnd
      901 yknsnssnwg ggrteeksss swndssskdq gwggrqpnqg wssgkngwge eveqtknsnw
      961 esagnkpvsg wgeggqneig twgngantsa askggwddck rnstwnetgr qpnswnkqqq
     1021 qhhqqqqess gswgpppqtp nngrppnpnw nsgpqpaapk eeepsgweep spqsisrkmd
     1081 iddgtsawgd pssynyknvn lwdknsqggq atreqslptp mtsksqasvw skstppapdn
     1141 gtsawgepne tspgwgevdd tgasttgwgn apstapnamk sssksmqdgw gesdgpvtgt
     1201 rhssweeeee ggvwntagsq gsssshnsts wgqggkktqm kcslkggssd swmnplskqf
     1261 snmgllsqte dipgskmdls vgglpdkkfe vdkramnlgd fndmmrkdrs gfrppnskdm
     1321 gttdsgpyfe kggnhglfgn staqsrgmht pvqplnpspn iraqvppqfl spqvsasmlk
     1381 qfpnsglnpg lfnmgpqlsp qqiamlsqlp qipqfqlacq lllqqqqqqq llqsqrklsq
     1441 avrqqqeqqi armvsalqqq qqrqpgmkhs pshpvgpkph ldsmvpnpln vglsdlqtkg
     1501 qipgygsgfg sssmdygmvg gkeagaesrf kqwtmmeglp svasqdanmh kngaivppgk
     1561 arggspynqf diiqgdplgg hggpagdswl pakspptnki gskssnaswp pefqpgvpwk
     1621 giqnidpesd pyvtpgsvlg gtatspivdt dhqllrdntt gsnsslntsl pspgawpysa
     1681 sdnsftnvhs tsakfsdyks twspdpighn pthlsnkmwk nhissrnttg lprpppgltn
     1741 pkpsspwnst aprsvrgwga qdsrlasgek nqllaplirp eectfystng leerklqlsa
     1801 stwsdggsvr psywlvlhnl tpqidgstlr ticmqhgpll tfhlnltqgt aliryntkqe
     1861 aakaqtalhm cvlgnttila efatdeevsr flaqaqpptp tatpsaptag wqsletgqnq
     1921 tdpvgpalnl fggstglgqw ssggsgggsg sdlpgtslwg ppsyssslwg vpsvedphrm
     1981 gspapllpgd llgggsdsi
//
LOCUS       XP_053920375            1996 aa            linear   VRT 09-MAR-2023
DEFINITION  trinucleotide repeat-containing gene 6B protein isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053920375
VERSION     XP_053920375.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064400.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1996
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1996
                     /product="trinucleotide repeat-containing gene 6B protein
                     isoform X2"
                     /calculated_mol_wt=212475
     Region          <314..672
                     /region_name="MSCRAMM_ClfA"
                     /note="MSCRAMM family adhesin clumping factor ClfA;
                     NF033609"
                     /db_xref="CDD:468110"
     Region          <526..>787
                     /region_name="ser_rich_anae_1"
                     /note="serine-rich protein; NF033849"
                     /db_xref="CDD:468206"
     Region          1116..1251
                     /region_name="Ago_hook"
                     /note="Argonaute hook; pfam10427"
                     /db_xref="CDD:463088"
     Region          1511..1765
                     /region_name="TNRC6-PABC_bdg"
                     /note="TNRC6-PABC binding domain; pfam16608"
                     /db_xref="CDD:465195"
     Region          1809..1891
                     /region_name="RRM_TNRC6B"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6B protein (TNRC6B);
                     cd12712"
                     /db_xref="CDD:410111"
     CDS             1..1996
                     /gene="TNRC6B"
                     /coded_by="XM_054064400.1:127..6117"
                     /db_xref="GeneID:104055510"
ORIGIN      
        1 mgsangqgft vidvggsqwa krsathlptg sasgrgfsvt dvrgsqwagr srkrlpmgta
       61 lgrgrwrrrq tsgrrgqsar grarrgpmgg aeafpgsrfp raggaapgte kkapqrflgp
      121 yvllrswvna lisflncgpe lkgfrfctec sqdrsswala algncqrqyf aflqsfaqil
      181 fpcklmreky wrkavpreke qereeqlmed kkrkkedkkk kesaqkvtdq ktkvpevtkp
      241 slsqpvaasp ignspsppvn ggnnakrvav pngqppsaar ymprevpprf rcqqdhkvll
      301 krgqppppsc mllgggagpp spaapganpn naqpvtgall qsdsgtatds aiggaaasny
      361 anstwgpgas snsgtnanpt hiwdkvivdg sdmeewpcia skdaesssen ttdnnsasnp
      421 gleknalpgs ttsnkgkgsq cqsgsagnec nlgawksdpk aksvqssnpa aesnnglgnw
      481 rnlsgqerig sgsgfsnfnp nsnpsawpal vqegssrkgt lesdsgssna qistvgqtsr
      541 eqqskmenag vnfvsgreqa qihntdgpkn gntnslnlss pnpmdnkgmp femglgnpsr
      601 stdtpsqstg erktgsvgsw gttrgssgtd tvsgqsnsgn hgnngkdred swkgasvqks
      661 ngsrsdswdn nnrstggggs wnfgpqhane skwgegnklt sgvsqgewkq lsgsdelkig
      721 ewsgpnqpns stgawdnqkg hplpenqgns qapcwgrsss sagsevggqs tgsnhkagss
      781 dshnsgrrsy rpthpdcqav lqtllsrtdl dprvlsntgw gqtqikqdtv wdieemprpe
      841 gksdkgtegw essatqtkns ggwgdvpsqs nqiksgwgel stptewkdpk ntggwndykn
      901 snssnwgggr teeksssswn dssskdqgwg grqpnqgwss gkngwgeeve qtknsnwesa
      961 gnkpvsgwge ggqneigtwg ngantsaask ggwddckrns twnetgrqpn swnkqqqqhh
     1021 qqqqessgsw gpppqtpnng rppnpnwnsg pqpaapkeee psgweepspq sisrkmdidd
     1081 gtsawgdpss ynyknvnlwd knsqggqatr eqslptpmts ksqasvwsks tppapdngts
     1141 awgepnetsp gwgevddtga sttgwgnaps tapnamksss ksmqdgwges dgpvtgtrhs
     1201 sweeeeeggv wntagsqgss sshnstswgq ggkktqmkcs lkggssdswm nplskqfsnm
     1261 gllsqtedip gskmdlsvgg lpdkkfevdk ramnlgdfnd mmrkdrsgfr ppnskdmgtt
     1321 dsgpyfekgg nhglfgnsta qsrgmhtpvq plnpspnira qvppqflspq vsasmlkqfp
     1381 nsglnpglfn mgpqlspqqi amlsqlpqip qfqlacqlll qqqqqqqllq sqrklsqavr
     1441 qqqeqqiarm vsalqqqqqr qpgmkhspsh pvgpkphlds mvpnplnvgl sdlqtkgqip
     1501 gygsgfgsss mdygmvggke agaesrfkqw tmmeglpsva sqdanmhkng aivppgkarg
     1561 gspynqfdii qgdplgghgg pagdswlpak spptnkigsk ssnaswppef qpgvpwkgiq
     1621 nidpesdpyv tpgsvlggta tspivdtdhq llrdnttgsn sslntslpsp gawpysasdn
     1681 sftnvhstsa kfsdykstws pdpighnpth lsnkmwknhi ssrnttglpr pppgltnpkp
     1741 sspwnstapr svrgwgaqds rlasgeknql laplirpeec tfystnglee rklqlsastw
     1801 sdggsvrpsy wlvlhnltpq idgstlrtic mqhgplltfh lnltqgtali ryntkqeaak
     1861 aqtalhmcvl gnttilaefa tdeevsrfla qaqpptptat psaptagwqs letgqnqtdp
     1921 vgpalnlfgg stglgqwssg gsgggsgsdl pgtslwgpps yssslwgvps vedphrmgsp
     1981 apllpgdllg ggsdsi
//
LOCUS       XP_053920384            1982 aa            linear   VRT 09-MAR-2023
DEFINITION  trinucleotide repeat-containing gene 6B protein isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053920384
VERSION     XP_053920384.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064409.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1982
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1982
                     /product="trinucleotide repeat-containing gene 6B protein
                     isoform X3"
                     /calculated_mol_wt=210862
     Region          <317..675
                     /region_name="MSCRAMM_ClfA"
                     /note="MSCRAMM family adhesin clumping factor ClfA;
                     NF033609"
                     /db_xref="CDD:468110"
     Region          <529..>790
                     /region_name="ser_rich_anae_1"
                     /note="serine-rich protein; NF033849"
                     /db_xref="CDD:468206"
     Region          1138..1254
                     /region_name="Ago_hook"
                     /note="Argonaute hook; pfam10427"
                     /db_xref="CDD:463088"
     Region          1514..1793
                     /region_name="TNRC6-PABC_bdg"
                     /note="TNRC6-PABC binding domain; pfam16608"
                     /db_xref="CDD:465195"
     Region          1795..1877
                     /region_name="RRM_TNRC6B"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6B protein (TNRC6B);
                     cd12712"
                     /db_xref="CDD:410111"
     CDS             1..1982
                     /gene="TNRC6B"
                     /coded_by="XM_054064409.1:127..6075"
                     /db_xref="GeneID:104055510"
ORIGIN      
        1 mgsangqgft vidvggsqwa krsathlptg sasgrgfsvt dvrgsqwagr srkrlpmgta
       61 lgrgrwrrrq tsgrrgqsar grarrgpmgg aeafpgsrfp raggaapgte kkapqrflgp
      121 yvllrswvna lisflncgpe lkgfrfctec sqdrsswala algncqrqyf aflqsfaqil
      181 fpcklmreky wrkavprsvr ekeqereeql medkkrkked kkkkesaqkv tdqktkvpev
      241 tkpslsqpva aspignspsp pvnggnnakr vavpngqpps aarymprevp prfrcqqdhk
      301 vllkrgqppp pscmllggga gppspaapga npnnaqpvtg allqsdsgta tdsaiggaaa
      361 snyanstwgp gassnsgtna npthiwdkvi vdgsdmeewp ciaskdaess senttdnnsa
      421 snpgleknal pgsttsnkgk gsqcqsgsag necnlgawks dpkaksvqss npaaesnngl
      481 gnwrnlsgqe rigsgsgfsn fnpnsnpsaw palvqegssr kgtlesdsgs snaqistvgq
      541 tsreqqskme nagvnfvsgr eqaqihntdg pkngntnsln lsspnpmdnk gmpfemglgn
      601 psrstdtpsq stgerktgsv gswgttrgss gtdtvsgqsn sgnhgnngkd redswkgasv
      661 qksngsrsds wdnnnrstgg ggswnfgpqh aneskwgegn kltsgvsqge wkqlsgsdel
      721 kigewsgpnq pnsstgawdn qkghplpenq gnsqapcwgr ssssagsevg gqstgsnhka
      781 gssdshnsgr rsyrpthpdc qavlqtllsr tdldprvlsn tgwgqtqikq dtvwdieemp
      841 rpegksdkgt egwessatqt knsggwgdvp sqsnqiksgw gelstptewk dpkntggwnd
      901 yknsnssnwg ggrteeksss swndssskdq gwggrqpnqg wssgkngwge eveqtknsnw
      961 esagnkpvsg wgeggqneig twgngantsa askggwddck rnstwnetgr qpnswnkqqq
     1021 qhhqqqqess gswgpppqtp nngrppnpnw nsgpqpaapk eeepsgweep spqsisrkmd
     1081 iddgtsawgd pssynyknvn lwdknsqggq atreqslptp mtsksqasvw skstppapdn
     1141 gtsawgepne tspgwgevdd tgasttgwgn apstapnamk sssksmqdgw gesdgpvtgt
     1201 rhssweeeee ggvwntagsq gsssshnsts wgqggkktqm kcslkggssd swmnplskqf
     1261 snmgllsqte dipgskmdls vgglpdkkfe vdkramnlgd fndmmrkdrs gfrppnskdm
     1321 gttdsgpyfe kggnhglfgn staqsrgmht pvqplnpspn iraqvppqfl spqvsasmlk
     1381 qfpnsglnpg lfnmgpqlsp qqiamlsqlp qipqfqlacq lllqqqqqqq llqsqrklsq
     1441 avrqqqeqqi armvsalqqq qqrqpgmkhs pshpvgpkph ldsmvpnpln vglsdlqtkg
     1501 qipgygsgfg sssmdygmvg gkeagaesrf kqwtmmeglp svasqdanmh kngaivppgk
     1561 arggspynqf diiqgdplgg hggpagdswl pakspptnki gskssnaswp pefqpgvpwk
     1621 giqnidpesd pyvtpgsvlg gtatspivdt dhqllrdntt gsnsslntsl pspgawpysa
     1681 sdnsftnvhs tsakfsdyks twspdpighn pthlsnkmwk nhissrnttg lprpppgltn
     1741 pkpsspwnst aprsvrgwga qdsrlasgek nqllaplirp eesstwsdgg svrpsywlvl
     1801 hnltpqidgs tlrticmqhg plltfhlnlt qgtalirynt kqeaakaqta lhmcvlgntt
     1861 ilaefatdee vsrflaqaqp ptptatpsap tagwqsletg qnqtdpvgpa lnlfggstgl
     1921 gqwssggsgg gsgsdlpgts lwgppsysss lwgvpsvedp hrmgspapll pgdllgggsd
     1981 si
//
LOCUS       XP_053920394            1967 aa            linear   VRT 09-MAR-2023
DEFINITION  trinucleotide repeat-containing gene 6B protein isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053920394
VERSION     XP_053920394.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064419.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1967
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1967
                     /product="trinucleotide repeat-containing gene 6B protein
                     isoform X4"
                     /calculated_mol_wt=209157
     Region          <317..675
                     /region_name="MSCRAMM_ClfA"
                     /note="MSCRAMM family adhesin clumping factor ClfA;
                     NF033609"
                     /db_xref="CDD:468110"
     Region          <529..>790
                     /region_name="ser_rich_anae_1"
                     /note="serine-rich protein; NF033849"
                     /db_xref="CDD:468206"
     Region          1138..1254
                     /region_name="Ago_hook"
                     /note="Argonaute hook; pfam10427"
                     /db_xref="CDD:463088"
     Region          1514..1778
                     /region_name="TNRC6-PABC_bdg"
                     /note="TNRC6-PABC binding domain; pfam16608"
                     /db_xref="CDD:465195"
     Region          1780..1862
                     /region_name="RRM_TNRC6B"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6B protein (TNRC6B);
                     cd12712"
                     /db_xref="CDD:410111"
     CDS             1..1967
                     /gene="TNRC6B"
                     /coded_by="XM_054064419.1:127..6030"
                     /db_xref="GeneID:104055510"
ORIGIN      
        1 mgsangqgft vidvggsqwa krsathlptg sasgrgfsvt dvrgsqwagr srkrlpmgta
       61 lgrgrwrrrq tsgrrgqsar grarrgpmgg aeafpgsrfp raggaapgte kkapqrflgp
      121 yvllrswvna lisflncgpe lkgfrfctec sqdrsswala algncqrqyf aflqsfaqil
      181 fpcklmreky wrkavprsvr ekeqereeql medkkrkked kkkkesaqkv tdqktkvpev
      241 tkpslsqpva aspignspsp pvnggnnakr vavpngqpps aarymprevp prfrcqqdhk
      301 vllkrgqppp pscmllggga gppspaapga npnnaqpvtg allqsdsgta tdsaiggaaa
      361 snyanstwgp gassnsgtna npthiwdkvi vdgsdmeewp ciaskdaess senttdnnsa
      421 snpgleknal pgsttsnkgk gsqcqsgsag necnlgawks dpkaksvqss npaaesnngl
      481 gnwrnlsgqe rigsgsgfsn fnpnsnpsaw palvqegssr kgtlesdsgs snaqistvgq
      541 tsreqqskme nagvnfvsgr eqaqihntdg pkngntnsln lsspnpmdnk gmpfemglgn
      601 psrstdtpsq stgerktgsv gswgttrgss gtdtvsgqsn sgnhgnngkd redswkgasv
      661 qksngsrsds wdnnnrstgg ggswnfgpqh aneskwgegn kltsgvsqge wkqlsgsdel
      721 kigewsgpnq pnsstgawdn qkghplpenq gnsqapcwgr ssssagsevg gqstgsnhka
      781 gssdshnsgr rsyrpthpdc qavlqtllsr tdldprvlsn tgwgqtqikq dtvwdieemp
      841 rpegksdkgt egwessatqt knsggwgdvp sqsnqiksgw gelstptewk dpkntggwnd
      901 yknsnssnwg ggrteeksss swndssskdq gwggrqpnqg wssgkngwge eveqtknsnw
      961 esagnkpvsg wgeggqneig twgngantsa askggwddck rnstwnetgr qpnswnkqqq
     1021 qhhqqqqess gswgpppqtp nngrppnpnw nsgpqpaapk eeepsgweep spqsisrkmd
     1081 iddgtsawgd pssynyknvn lwdknsqggq atreqslptp mtsksqasvw skstppapdn
     1141 gtsawgepne tspgwgevdd tgasttgwgn apstapnamk sssksmqdgw gesdgpvtgt
     1201 rhssweeeee ggvwntagsq gsssshnsts wgqggkktqm kcslkggssd swmnplskqf
     1261 snmgllsqte dipgskmdls vgglpdkkfe vdkramnlgd fndmmrkdrs gfrppnskdm
     1321 gttdsgpyfe kggnhglfgn staqsrgmht pvqplnpspn iraqvppqfl spqvsasmlk
     1381 qfpnsglnpg lfnmgpqlsp qqiamlsqlp qipqfqlacq lllqqqqqqq llqsqrklsq
     1441 avrqqqeqqi armvsalqqq qqrqpgmkhs pshpvgpkph ldsmvpnpln vglsdlqtkg
     1501 qipgygsgfg sssmdygmvg gkeagaesrf kqwtmmeglp svasqdanmh kngaivppgk
     1561 arggspynqf diiqgdplgg hggpagdswl pakspptnki gskssnaswp pefqpgvpwk
     1621 giqnidpesd pyvtpgsvlg gtatspivdt dhqllrdntt gsnsslntsl pspgawpysa
     1681 sdnsftnvhs tsakfsdyks twspdpighn pthlsnkmwk nhissrnttg lprpppgltn
     1741 pkpsspwnst aprsvrgwga qdsrlasast wsdggsvrps ywlvlhnltp qidgstlrti
     1801 cmqhgplltf hlnltqgtal iryntkqeaa kaqtalhmcv lgnttilaef atdeevsrfl
     1861 aqaqpptpta tpsaptagwq sletgqnqtd pvgpalnlfg gstglgqwss ggsgggsgsd
     1921 lpgtslwgpp syssslwgvp svedphrmgs papllpgdll gggsdsi
//
LOCUS       XP_053920401            1966 aa            linear   VRT 09-MAR-2023
DEFINITION  trinucleotide repeat-containing gene 6B protein isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053920401
VERSION     XP_053920401.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064426.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1966
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1966
                     /product="trinucleotide repeat-containing gene 6B protein
                     isoform X5"
                     /calculated_mol_wt=208727
     Region          <284..642
                     /region_name="MSCRAMM_ClfA"
                     /note="MSCRAMM family adhesin clumping factor ClfA;
                     NF033609"
                     /db_xref="CDD:468110"
     Region          <496..>757
                     /region_name="ser_rich_anae_1"
                     /note="serine-rich protein; NF033849"
                     /db_xref="CDD:468206"
     Region          1105..1221
                     /region_name="Ago_hook"
                     /note="Argonaute hook; pfam10427"
                     /db_xref="CDD:463088"
     Region          1481..1735
                     /region_name="TNRC6-PABC_bdg"
                     /note="TNRC6-PABC binding domain; pfam16608"
                     /db_xref="CDD:465195"
     Region          1779..1861
                     /region_name="RRM_TNRC6B"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6B protein (TNRC6B);
                     cd12712"
                     /db_xref="CDD:410111"
     CDS             1..1966
                     /gene="TNRC6B"
                     /coded_by="XM_054064426.1:127..6027"
                     /db_xref="GeneID:104055510"
ORIGIN      
        1 mgsangqgft vidvggsqwa krsathlptg sasgrgfsvt dvrgsqwagr srkrlpmgta
       61 lgrgrwrrrq tsgrrgqsar grarrgpmgg aeafpgsrfp raggaapgte kkapqrflgp
      121 yvllrswvna lisflncgpe lkgfrfctec sqdrsswala algncqreke qereeqlmed
      181 kkrkkedkkk kesaqkvtdq ktkvpevtkp slsqpvaasp ignspsppvn ggnnakrvav
      241 pngqppsaar ymprevpprf rcqqdhkvll krgqppppsc mllgggagpp spaapganpn
      301 naqpvtgall qsdsgtatds aiggaaasny anstwgpgas snsgtnanpt hiwdkvivdg
      361 sdmeewpcia skdaesssen ttdnnsasnp gleknalpgs ttsnkgkgsq cqsgsagnec
      421 nlgawksdpk aksvqssnpa aesnnglgnw rnlsgqerig sgsgfsnfnp nsnpsawpal
      481 vqegssrkgt lesdsgssna qistvgqtsr eqqskmenag vnfvsgreqa qihntdgpkn
      541 gntnslnlss pnpmdnkgmp femglgnpsr stdtpsqstg erktgsvgsw gttrgssgtd
      601 tvsgqsnsgn hgnngkdred swkgasvqks ngsrsdswdn nnrstggggs wnfgpqhane
      661 skwgegnklt sgvsqgewkq lsgsdelkig ewsgpnqpns stgawdnqkg hplpenqgns
      721 qapcwgrsss sagsevggqs tgsnhkagss dshnsgrrsy rpthpdcqav lqtllsrtdl
      781 dprvlsntgw gqtqikqdtv wdieemprpe gksdkgtegw essatqtkns ggwgdvpsqs
      841 nqiksgwgel stptewkdpk ntggwndykn snssnwgggr teeksssswn dssskdqgwg
      901 grqpnqgwss gkngwgeeve qtknsnwesa gnkpvsgwge ggqneigtwg ngantsaask
      961 ggwddckrns twnetgrqpn swnkqqqqhh qqqqessgsw gpppqtpnng rppnpnwnsg
     1021 pqpaapkeee psgweepspq sisrkmdidd gtsawgdpss ynyknvnlwd knsqggqatr
     1081 eqslptpmts ksqasvwsks tppapdngts awgepnetsp gwgevddtga sttgwgnaps
     1141 tapnamksss ksmqdgwges dgpvtgtrhs sweeeeeggv wntagsqgss sshnstswgq
     1201 ggkktqmkcs lkggssdswm nplskqfsnm gllsqtedip gskmdlsvgg lpdkkfevdk
     1261 ramnlgdfnd mmrkdrsgfr ppnskdmgtt dsgpyfekgg nhglfgnsta qsrgmhtpvq
     1321 plnpspnira qvppqflspq vsasmlkqfp nsglnpglfn mgpqlspqqi amlsqlpqip
     1381 qfqlacqlll qqqqqqqllq sqrklsqavr qqqeqqiarm vsalqqqqqr qpgmkhspsh
     1441 pvgpkphlds mvpnplnvgl sdlqtkgqip gygsgfgsss mdygmvggke agaesrfkqw
     1501 tmmeglpsva sqdanmhkng aivppgkarg gspynqfdii qgdplgghgg pagdswlpak
     1561 spptnkigsk ssnaswppef qpgvpwkgiq nidpesdpyv tpgsvlggta tspivdtdhq
     1621 llrdnttgsn sslntslpsp gawpysasdn sftnvhstsa kfsdykstws pdpighnpth
     1681 lsnkmwknhi ssrnttglpr pppgltnpkp sspwnstapr svrgwgaqds rlasgeknql
     1741 laplirpeec tfystnglee rklqlsastw sdggsvrpsy wlvlhnltpq idgstlrtic
     1801 mqhgplltfh lnltqgtali ryntkqeaak aqtalhmcvl gnttilaefa tdeevsrfla
     1861 qaqpptptat psaptagwqs letgqnqtdp vgpalnlfgg stglgqwssg gsgggsgsdl
     1921 pgtslwgpps yssslwgvps vedphrmgsp apllpgdllg ggsdsi
//
LOCUS       XP_053920412            1957 aa            linear   VRT 09-MAR-2023
DEFINITION  trinucleotide repeat-containing gene 6B protein isoform X6 [Cuculus
            canorus].
ACCESSION   XP_053920412
VERSION     XP_053920412.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064437.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1957
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1957
                     /product="trinucleotide repeat-containing gene 6B protein
                     isoform X6"
                     /calculated_mol_wt=208400
     Region          <317..675
                     /region_name="MSCRAMM_ClfA"
                     /note="MSCRAMM family adhesin clumping factor ClfA;
                     NF033609"
                     /db_xref="CDD:468110"
     Region          <529..>790
                     /region_name="ser_rich_anae_1"
                     /note="serine-rich protein; NF033849"
                     /db_xref="CDD:468206"
     Region          1119..1254
                     /region_name="Ago_hook"
                     /note="Argonaute hook; pfam10427"
                     /db_xref="CDD:463088"
     Region          1472..1726
                     /region_name="TNRC6-PABC_bdg"
                     /note="TNRC6-PABC binding domain; pfam16608"
                     /db_xref="CDD:465195"
     Region          1770..1852
                     /region_name="RRM_TNRC6B"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6B protein (TNRC6B);
                     cd12712"
                     /db_xref="CDD:410111"
     CDS             1..1957
                     /gene="TNRC6B"
                     /coded_by="XM_054064437.1:127..6000"
                     /db_xref="GeneID:104055510"
ORIGIN      
        1 mgsangqgft vidvggsqwa krsathlptg sasgrgfsvt dvrgsqwagr srkrlpmgta
       61 lgrgrwrrrq tsgrrgqsar grarrgpmgg aeafpgsrfp raggaapgte kkapqrflgp
      121 yvllrswvna lisflncgpe lkgfrfctec sqdrsswala algncqrqyf aflqsfaqil
      181 fpcklmreky wrkavprsvr ekeqereeql medkkrkked kkkkesaqkv tdqktkvpev
      241 tkpslsqpva aspignspsp pvnggnnakr vavpngqpps aarymprevp prfrcqqdhk
      301 vllkrgqppp pscmllggga gppspaapga npnnaqpvtg allqsdsgta tdsaiggaaa
      361 snyanstwgp gassnsgtna npthiwdkvi vdgsdmeewp ciaskdaess senttdnnsa
      421 snpgleknal pgsttsnkgk gsqcqsgsag necnlgawks dpkaksvqss npaaesnngl
      481 gnwrnlsgqe rigsgsgfsn fnpnsnpsaw palvqegssr kgtlesdsgs snaqistvgq
      541 tsreqqskme nagvnfvsgr eqaqihntdg pkngntnsln lsspnpmdnk gmpfemglgn
      601 psrstdtpsq stgerktgsv gswgttrgss gtdtvsgqsn sgnhgnngkd redswkgasv
      661 qksngsrsds wdnnnrstgg ggswnfgpqh aneskwgegn kltsgvsqge wkqlsgsdel
      721 kigewsgpnq pnsstgawdn qkghplpenq gnsqapcwgr ssssagsevg gqstgsnhka
      781 gssdshnsgr rsyrpthpdc qavlqtllsr tdldprvlsn tgwgqtqikq dtvwdieemp
      841 rpegksdkgt egwessatqt knsggwgdvp sqsnqiksgw gelstptewk dpkntggwnd
      901 yknsnssnwg ggrteeksss swndssskdq gwggrqpnqg wssgkngwge eveqtknsnw
      961 esagnkpvsg wgeggqneig twgngantsa askggwddck rnstwnetgr qpnswnkqqq
     1021 qhhqqqqess gswgpppqtp nngrppnpnw nsgpqpaapk eeepsgweep spqsisrkmd
     1081 iddgtsawgd pssynyknvn lwdknsqggq atreqslptp mtsksqasvw skstppapdn
     1141 gtsawgepne tspgwgevdd tgasttgwgn apstapnamk sssksmqdgw gesdgpvtgt
     1201 rhssweeeee ggvwntagsq gsssshnsts wgqggkktqm kcslkggssd swmnplskqf
     1261 snmgllsqte dipgskmdls vgglpdkkfe vdkramnlgd fndmmrkdrs gfrppnskdm
     1321 gttdsgpyfe kvsasmlkqf pnsglnpglf nmgpqlspqq iamlsqlpqi pqfqlacqll
     1381 lqqqqqqqll qsqrklsqav rqqqeqqiar mvsalqqqqq rqpgmkhsps hpvgpkphld
     1441 smvpnplnvg lsdlqtkgqi pgygsgfgss smdygmvggk eagaesrfkq wtmmeglpsv
     1501 asqdanmhkn gaivppgkar ggspynqfdi iqgdplgghg gpagdswlpa kspptnkigs
     1561 kssnaswppe fqpgvpwkgi qnidpesdpy vtpgsvlggt atspivdtdh qllrdnttgs
     1621 nsslntslps pgawpysasd nsftnvhsts akfsdykstw spdpighnpt hlsnkmwknh
     1681 issrnttglp rpppgltnpk psspwnstap rsvrgwgaqd srlasgeknq llaplirpee
     1741 ctfystngle erklqlsast wsdggsvrps ywlvlhnltp qidgstlrti cmqhgplltf
     1801 hlnltqgtal iryntkqeaa kaqtalhmcv lgnttilaef atdeevsrfl aqaqpptpta
     1861 tpsaptagwq sletgqnqtd pvgpalnlfg gstglgqwss ggsgggsgsd lpgtslwgpp
     1921 syssslwgvp svedphrmgs papllpgdll gggsdsi
//
LOCUS       XP_053920423            1946 aa            linear   VRT 09-MAR-2023
DEFINITION  trinucleotide repeat-containing gene 6B protein isoform X7 [Cuculus
            canorus].
ACCESSION   XP_053920423
VERSION     XP_053920423.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064448.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1946
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1946
                     /product="trinucleotide repeat-containing gene 6B protein
                     isoform X7"
                     /calculated_mol_wt=207445
     Region          <317..675
                     /region_name="MSCRAMM_ClfA"
                     /note="MSCRAMM family adhesin clumping factor ClfA;
                     NF033609"
                     /db_xref="CDD:468110"
     Region          <529..>790
                     /region_name="ser_rich_anae_1"
                     /note="serine-rich protein; NF033849"
                     /db_xref="CDD:468206"
     Region          1461..1715
                     /region_name="TNRC6-PABC_bdg"
                     /note="TNRC6-PABC binding domain; pfam16608"
                     /db_xref="CDD:465195"
     Region          1759..1841
                     /region_name="RRM_TNRC6B"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6B protein (TNRC6B);
                     cd12712"
                     /db_xref="CDD:410111"
     CDS             1..1946
                     /gene="TNRC6B"
                     /coded_by="XM_054064448.1:127..5967"
                     /db_xref="GeneID:104055510"
ORIGIN      
        1 mgsangqgft vidvggsqwa krsathlptg sasgrgfsvt dvrgsqwagr srkrlpmgta
       61 lgrgrwrrrq tsgrrgqsar grarrgpmgg aeafpgsrfp raggaapgte kkapqrflgp
      121 yvllrswvna lisflncgpe lkgfrfctec sqdrsswala algncqrqyf aflqsfaqil
      181 fpcklmreky wrkavprsvr ekeqereeql medkkrkked kkkkesaqkv tdqktkvpev
      241 tkpslsqpva aspignspsp pvnggnnakr vavpngqpps aarymprevp prfrcqqdhk
      301 vllkrgqppp pscmllggga gppspaapga npnnaqpvtg allqsdsgta tdsaiggaaa
      361 snyanstwgp gassnsgtna npthiwdkvi vdgsdmeewp ciaskdaess senttdnnsa
      421 snpgleknal pgsttsnkgk gsqcqsgsag necnlgawks dpkaksvqss npaaesnngl
      481 gnwrnlsgqe rigsgsgfsn fnpnsnpsaw palvqegssr kgtlesdsgs snaqistvgq
      541 tsreqqskme nagvnfvsgr eqaqihntdg pkngntnsln lsspnpmdnk gmpfemglgn
      601 psrstdtpsq stgerktgsv gswgttrgss gtdtvsgqsn sgnhgnngkd redswkgasv
      661 qksngsrsds wdnnnrstgg ggswnfgpqh aneskwgegn kltsgvsqge wkqlsgsdel
      721 kigewsgpnq pnsstgawdn qkghplpenq gnsqapcwgr ssssagsevg gqstgsnhka
      781 gssdshnsgr rsyrpthpdc qavlqtllsr tdldprvlsn tgwgqtqikq dtvwdieemp
      841 rpegksdkgt egwessatqt knsggwgdvp sqsnqiksgw gelstptewk dpkntggwnd
      901 yknsnssnwg ggrteeksss swndssskdq gwggrqpnqg wssgkngwge eveqtknsnw
      961 esagnkpvsg wgeggqneig twgngantsa askggwddck rnstwnetgr qpnswnkqqq
     1021 qhhqqqqess gswgpppqtp nngrppnpnw nsgpqpaapk eeepsgweep spqsisrkmd
     1081 iddgtsawgd pssynyknvn lwdknsqggq atreqslptp mtsksqasgs ksmqdgwges
     1141 dgpvtgtrhs sweeeeeggv wntagsqgss sshnstswgq ggkktqmkcs lkggssdswm
     1201 nplskqfsnm gllsqtedip gskmdlsvgg lpdkkfevdk ramnlgdfnd mmrkdrsgfr
     1261 ppnskdmgtt dsgpyfekgg nhglfgnsta qsrgmhtpvq plnpspnira qvppqflspq
     1321 vsasmlkqfp nsglnpglfn mgpqlspqqi amlsqlpqip qfqlacqlll qqqqqqqllq
     1381 sqrklsqavr qqqeqqiarm vsalqqqqqr qpgmkhspsh pvgpkphlds mvpnplnvgl
     1441 sdlqtkgqip gygsgfgsss mdygmvggke agaesrfkqw tmmeglpsva sqdanmhkng
     1501 aivppgkarg gspynqfdii qgdplgghgg pagdswlpak spptnkigsk ssnaswppef
     1561 qpgvpwkgiq nidpesdpyv tpgsvlggta tspivdtdhq llrdnttgsn sslntslpsp
     1621 gawpysasdn sftnvhstsa kfsdykstws pdpighnpth lsnkmwknhi ssrnttglpr
     1681 pppgltnpkp sspwnstapr svrgwgaqds rlasgeknql laplirpeec tfystnglee
     1741 rklqlsastw sdggsvrpsy wlvlhnltpq idgstlrtic mqhgplltfh lnltqgtali
     1801 ryntkqeaak aqtalhmcvl gnttilaefa tdeevsrfla qaqpptptat psaptagwqs
     1861 letgqnqtdp vgpalnlfgg stglgqwssg gsgggsgsdl pgtslwgpps yssslwgvps
     1921 vedphrmgsp apllpgdllg ggsdsi
//
LOCUS       XP_053920434            1914 aa            linear   VRT 09-MAR-2023
DEFINITION  trinucleotide repeat-containing gene 6B protein isoform X8 [Cuculus
            canorus].
ACCESSION   XP_053920434
VERSION     XP_053920434.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064459.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1914
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1914
                     /product="trinucleotide repeat-containing gene 6B protein
                     isoform X8"
                     /calculated_mol_wt=203785
     Region          <317..675
                     /region_name="MSCRAMM_ClfA"
                     /note="MSCRAMM family adhesin clumping factor ClfA;
                     NF033609"
                     /db_xref="CDD:468110"
     Region          <529..>790
                     /region_name="ser_rich_anae_1"
                     /note="serine-rich protein; NF033849"
                     /db_xref="CDD:468206"
     Region          1461..1725
                     /region_name="TNRC6-PABC_bdg"
                     /note="TNRC6-PABC binding domain; pfam16608"
                     /db_xref="CDD:465195"
     Region          1727..1809
                     /region_name="RRM_TNRC6B"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6B protein (TNRC6B);
                     cd12712"
                     /db_xref="CDD:410111"
     CDS             1..1914
                     /gene="TNRC6B"
                     /coded_by="XM_054064459.1:127..5871"
                     /db_xref="GeneID:104055510"
ORIGIN      
        1 mgsangqgft vidvggsqwa krsathlptg sasgrgfsvt dvrgsqwagr srkrlpmgta
       61 lgrgrwrrrq tsgrrgqsar grarrgpmgg aeafpgsrfp raggaapgte kkapqrflgp
      121 yvllrswvna lisflncgpe lkgfrfctec sqdrsswala algncqrqyf aflqsfaqil
      181 fpcklmreky wrkavprsvr ekeqereeql medkkrkked kkkkesaqkv tdqktkvpev
      241 tkpslsqpva aspignspsp pvnggnnakr vavpngqpps aarymprevp prfrcqqdhk
      301 vllkrgqppp pscmllggga gppspaapga npnnaqpvtg allqsdsgta tdsaiggaaa
      361 snyanstwgp gassnsgtna npthiwdkvi vdgsdmeewp ciaskdaess senttdnnsa
      421 snpgleknal pgsttsnkgk gsqcqsgsag necnlgawks dpkaksvqss npaaesnngl
      481 gnwrnlsgqe rigsgsgfsn fnpnsnpsaw palvqegssr kgtlesdsgs snaqistvgq
      541 tsreqqskme nagvnfvsgr eqaqihntdg pkngntnsln lsspnpmdnk gmpfemglgn
      601 psrstdtpsq stgerktgsv gswgttrgss gtdtvsgqsn sgnhgnngkd redswkgasv
      661 qksngsrsds wdnnnrstgg ggswnfgpqh aneskwgegn kltsgvsqge wkqlsgsdel
      721 kigewsgpnq pnsstgawdn qkghplpenq gnsqapcwgr ssssagsevg gqstgsnhka
      781 gssdshnsgr rsyrpthpdc qavlqtllsr tdldprvlsn tgwgqtqikq dtvwdieemp
      841 rpegksdkgt egwessatqt knsggwgdvp sqsnqiksgw gelstptewk dpkntggwnd
      901 yknsnssnwg ggrteeksss swndssskdq gwggrqpnqg wssgkngwge eveqtknsnw
      961 esagnkpvsg wgeggqneig twgngantsa askggwddck rnstwnetgr qpnswnkqqq
     1021 qhhqqqqess gswgpppqtp nngrppnpnw nsgpqpaapk eeepsgweep spqsisrkmd
     1081 iddgtsawgd pssynyknvn lwdknsqggq atreqslptp mtsksqasgs ksmqdgwges
     1141 dgpvtgtrhs sweeeeeggv wntagsqgss sshnstswgq ggkktqmkcs lkggssdswm
     1201 nplskqfsnm gllsqtedip gskmdlsvgg lpdkkfevdk ramnlgdfnd mmrkdrsgfr
     1261 ppnskdmgtt dsgpyfekgg nhglfgnsta qsrgmhtpvq plnpspnira qvppqflspq
     1321 vsasmlkqfp nsglnpglfn mgpqlspqqi amlsqlpqip qfqlacqlll qqqqqqqllq
     1381 sqrklsqavr qqqeqqiarm vsalqqqqqr qpgmkhspsh pvgpkphlds mvpnplnvgl
     1441 sdlqtkgqip gygsgfgsss mdygmvggke agaesrfkqw tmmeglpsva sqdanmhkng
     1501 aivppgkarg gspynqfdii qgdplgghgg pagdswlpak spptnkigsk ssnaswppef
     1561 qpgvpwkgiq nidpesdpyv tpgsvlggta tspivdtdhq llrdnttgsn sslntslpsp
     1621 gawpysasdn sftnvhstsa kfsdykstws pdpighnpth lsnkmwknhi ssrnttglpr
     1681 pppgltnpkp sspwnstapr svrgwgaqds rlasastwsd ggsvrpsywl vlhnltpqid
     1741 gstlrticmq hgplltfhln ltqgtaliry ntkqeaakaq talhmcvlgn ttilaefatd
     1801 eevsrflaqa qpptptatps aptagwqsle tgqnqtdpvg palnlfggst glgqwssggs
     1861 gggsgsdlpg tslwgppsys sslwgvpsve dphrmgspap llpgdllggg sdsi
//
LOCUS       XP_053920443            1867 aa            linear   VRT 09-MAR-2023
DEFINITION  trinucleotide repeat-containing gene 6B protein isoform X9 [Cuculus
            canorus].
ACCESSION   XP_053920443
VERSION     XP_053920443.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064468.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1867
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1867
                     /product="trinucleotide repeat-containing gene 6B protein
                     isoform X9"
                     /calculated_mol_wt=198801
     Region          <185..543
                     /region_name="MSCRAMM_ClfA"
                     /note="MSCRAMM family adhesin clumping factor ClfA;
                     NF033609"
                     /db_xref="CDD:468110"
     Region          <397..>658
                     /region_name="ser_rich_anae_1"
                     /note="serine-rich protein; NF033849"
                     /db_xref="CDD:468206"
     Region          987..1122
                     /region_name="Ago_hook"
                     /note="Argonaute hook; pfam10427"
                     /db_xref="CDD:463088"
     Region          1382..1636
                     /region_name="TNRC6-PABC_bdg"
                     /note="TNRC6-PABC binding domain; pfam16608"
                     /db_xref="CDD:465195"
     Region          1680..1762
                     /region_name="RRM_TNRC6B"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6B protein (TNRC6B);
                     cd12712"
                     /db_xref="CDD:410111"
     CDS             1..1867
                     /gene="TNRC6B"
                     /coded_by="XM_054064468.1:367..5970"
                     /db_xref="GeneID:104055510"
ORIGIN      
        1 mwaggvtmlr gfrfctecsq drsswalaal gncqrqyfaf lqsfaqilfp cklmrekywr
       61 kavprsvrek eqereeqlme dkkrkkedkk kkesaqkvtd qktkvpevtk pslsqpvaas
      121 pignspsppv nggnnakrva vpngqppsaa rymprevppr frcqqdhkvl lkrgqpppps
      181 cmllgggagp pspaapganp nnaqpvtgal lqsdsgtatd saiggaaasn yanstwgpga
      241 ssnsgtnanp thiwdkvivd gsdmeewpci askdaessse nttdnnsasn pgleknalpg
      301 sttsnkgkgs qcqsgsagne cnlgawksdp kaksvqssnp aaesnnglgn wrnlsgqeri
      361 gsgsgfsnfn pnsnpsawpa lvqegssrkg tlesdsgssn aqistvgqts reqqskmena
      421 gvnfvsgreq aqihntdgpk ngntnslnls spnpmdnkgm pfemglgnps rstdtpsqst
      481 gerktgsvgs wgttrgssgt dtvsgqsnsg nhgnngkdre dswkgasvqk sngsrsdswd
      541 nnnrstgggg swnfgpqhan eskwgegnkl tsgvsqgewk qlsgsdelki gewsgpnqpn
      601 sstgawdnqk ghplpenqgn sqapcwgrss ssagsevggq stgsnhkags sdshnsgrrs
      661 yrpthpdcqa vlqtllsrtd ldprvlsntg wgqtqikqdt vwdieemprp egksdkgteg
      721 wessatqtkn sggwgdvpsq snqiksgwge lstptewkdp kntggwndyk nsnssnwggg
      781 rteekssssw ndssskdqgw ggrqpnqgws sgkngwgeev eqtknsnwes agnkpvsgwg
      841 eggqneigtw gngantsaas kggwddckrn stwnetgrqp nswnkqqqqh hqqqqessgs
      901 wgpppqtpnn grppnpnwns gpqpaapkee epsgweepsp qsisrkmdid dgtsawgdps
      961 synyknvnlw dknsqggqat reqslptpmt sksqasvwsk stppapdngt sawgepnets
     1021 pgwgevddtg asttgwgnap stapnamkss sksmqdgwge sdgpvtgtrh ssweeeeegg
     1081 vwntagsqgs ssshnstswg qggkktqmkc slkggssdsw mnplskqfsn mgllsqtedi
     1141 pgskmdlsvg glpdkkfevd kramnlgdfn dmmrkdrsgf rppnskdmgt tdsgpyfekg
     1201 gnhglfgnst aqsrgmhtpv qplnpspnir aqvppqflsp qvsasmlkqf pnsglnpglf
     1261 nmgpqlspqq iamlsqlpqi pqfqlacqll lqqqqqqqll qsqrklsqav rqqqeqqiar
     1321 mvsalqqqqq rqpgmkhsps hpvgpkphld smvpnplnvg lsdlqtkgqi pgygsgfgss
     1381 smdygmvggk eagaesrfkq wtmmeglpsv asqdanmhkn gaivppgkar ggspynqfdi
     1441 iqgdplgghg gpagdswlpa kspptnkigs kssnaswppe fqpgvpwkgi qnidpesdpy
     1501 vtpgsvlggt atspivdtdh qllrdnttgs nsslntslps pgawpysasd nsftnvhsts
     1561 akfsdykstw spdpighnpt hlsnkmwknh issrnttglp rpppgltnpk psspwnstap
     1621 rsvrgwgaqd srlasgeknq llaplirpee ctfystngle erklqlsast wsdggsvrps
     1681 ywlvlhnltp qidgstlrti cmqhgplltf hlnltqgtal iryntkqeaa kaqtalhmcv
     1741 lgnttilaef atdeevsrfl aqaqpptpta tpsaptagwq sletgqnqtd pvgpalnlfg
     1801 gstglgqwss ggsgggsgsd lpgtslwgpp syssslwgvp svedphrmgs papllpgdll
     1861 gggsdsi
//
LOCUS       XP_053920451            1840 aa            linear   VRT 09-MAR-2023
DEFINITION  trinucleotide repeat-containing gene 6B protein isoform X10
            [Cuculus canorus].
ACCESSION   XP_053920451
VERSION     XP_053920451.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064476.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1840
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1840
                     /product="trinucleotide repeat-containing gene 6B protein
                     isoform X10"
                     /calculated_mol_wt=195383
     Region          <370..>631
                     /region_name="ser_rich_anae_1"
                     /note="serine-rich protein; NF033849"
                     /db_xref="CDD:468206"
     Region          960..1095
                     /region_name="Ago_hook"
                     /note="Argonaute hook; pfam10427"
                     /db_xref="CDD:463088"
     Region          1355..1609
                     /region_name="TNRC6-PABC_bdg"
                     /note="TNRC6-PABC binding domain; pfam16608"
                     /db_xref="CDD:465195"
     Region          1653..1735
                     /region_name="RRM_TNRC6B"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6B protein (TNRC6B);
                     cd12712"
                     /db_xref="CDD:410111"
     CDS             1..1840
                     /gene="TNRC6B"
                     /coded_by="XM_054064476.1:271..5793"
                     /db_xref="GeneID:104055510"
ORIGIN      
        1 mqtdegeile egspkvseme hedfvmeghg ktpppgeenk qekeqereeq lmedkkrkke
       61 dkkkkesaqk vtdqktkvpe vtkpslsqpv aaspignsps ppvnggnnak rvavpngqpp
      121 saarymprev pprfrcqqdh kvllkrgqpp ppscmllggg agppspaapg anpnnaqpvt
      181 gallqsdsgt atdsaiggaa asnyanstwg pgassnsgtn anpthiwdkv ivdgsdmeew
      241 pciaskdaes ssenttdnns asnpglekna lpgsttsnkg kgsqcqsgsa gnecnlgawk
      301 sdpkaksvqs snpaaesnng lgnwrnlsgq erigsgsgfs nfnpnsnpsa wpalvqegss
      361 rkgtlesdsg ssnaqistvg qtsreqqskm enagvnfvsg reqaqihntd gpkngntnsl
      421 nlsspnpmdn kgmpfemglg npsrstdtps qstgerktgs vgswgttrgs sgtdtvsgqs
      481 nsgnhgnngk dredswkgas vqksngsrsd swdnnnrstg gggswnfgpq haneskwgeg
      541 nkltsgvsqg ewkqlsgsde lkigewsgpn qpnsstgawd nqkghplpen qgnsqapcwg
      601 rssssagsev ggqstgsnhk agssdshnsg rrsyrpthpd cqavlqtlls rtdldprvls
      661 ntgwgqtqik qdtvwdieem prpegksdkg tegwessatq tknsggwgdv psqsnqiksg
      721 wgelstptew kdpkntggwn dyknsnssnw gggrteekss sswndssskd qgwggrqpnq
      781 gwssgkngwg eeveqtknsn wesagnkpvs gwgeggqnei gtwgngants aaskggwddc
      841 krnstwnetg rqpnswnkqq qqhhqqqqes sgswgpppqt pnngrppnpn wnsgpqpaap
      901 keeepsgwee pspqsisrkm diddgtsawg dpssynyknv nlwdknsqgg qatreqslpt
      961 pmtsksqasv wskstppapd ngtsawgepn etspgwgevd dtgasttgwg napstapnam
     1021 ksssksmqdg wgesdgpvtg trhssweeee eggvwntags qgsssshnst swgqggkktq
     1081 mkcslkggss dswmnplskq fsnmgllsqt edipgskmdl svgglpdkkf evdkramnlg
     1141 dfndmmrkdr sgfrppnskd mgttdsgpyf ekggnhglfg nstaqsrgmh tpvqplnpsp
     1201 niraqvppqf lspqvsasml kqfpnsglnp glfnmgpqls pqqiamlsql pqipqfqlac
     1261 qlllqqqqqq qllqsqrkls qavrqqqeqq iarmvsalqq qqqrqpgmkh spshpvgpkp
     1321 hldsmvpnpl nvglsdlqtk gqipgygsgf gsssmdygmv ggkeagaesr fkqwtmmegl
     1381 psvasqdanm hkngaivppg karggspynq fdiiqgdplg ghggpagdsw lpakspptnk
     1441 igskssnasw ppefqpgvpw kgiqnidpes dpyvtpgsvl ggtatspivd tdhqllrdnt
     1501 tgsnsslnts lpspgawpys asdnsftnvh stsakfsdyk stwspdpigh npthlsnkmw
     1561 knhissrntt glprpppglt npkpsspwns taprsvrgwg aqdsrlasge knqllaplir
     1621 peectfystn gleerklqls astwsdggsv rpsywlvlhn ltpqidgstl rticmqhgpl
     1681 ltfhlnltqg taliryntkq eaakaqtalh mcvlgnttil aefatdeevs rflaqaqppt
     1741 ptatpsapta gwqsletgqn qtdpvgpaln lfggstglgq wssggsgggs gsdlpgtslw
     1801 gppsyssslw gvpsvedphr mgspapllpg dllgggsdsi
//
LOCUS       XP_053920463            1840 aa            linear   VRT 09-MAR-2023
DEFINITION  trinucleotide repeat-containing gene 6B protein isoform X10
            [Cuculus canorus].
ACCESSION   XP_053920463
VERSION     XP_053920463.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064488.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1840
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1840
                     /product="trinucleotide repeat-containing gene 6B protein
                     isoform X10"
                     /calculated_mol_wt=195383
     Region          <370..>631
                     /region_name="ser_rich_anae_1"
                     /note="serine-rich protein; NF033849"
                     /db_xref="CDD:468206"
     Region          960..1095
                     /region_name="Ago_hook"
                     /note="Argonaute hook; pfam10427"
                     /db_xref="CDD:463088"
     Region          1355..1609
                     /region_name="TNRC6-PABC_bdg"
                     /note="TNRC6-PABC binding domain; pfam16608"
                     /db_xref="CDD:465195"
     Region          1653..1735
                     /region_name="RRM_TNRC6B"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6B protein (TNRC6B);
                     cd12712"
                     /db_xref="CDD:410111"
     CDS             1..1840
                     /gene="TNRC6B"
                     /coded_by="XM_054064488.1:623..6145"
                     /db_xref="GeneID:104055510"
ORIGIN      
        1 mqtdegeile egspkvseme hedfvmeghg ktpppgeenk qekeqereeq lmedkkrkke
       61 dkkkkesaqk vtdqktkvpe vtkpslsqpv aaspignsps ppvnggnnak rvavpngqpp
      121 saarymprev pprfrcqqdh kvllkrgqpp ppscmllggg agppspaapg anpnnaqpvt
      181 gallqsdsgt atdsaiggaa asnyanstwg pgassnsgtn anpthiwdkv ivdgsdmeew
      241 pciaskdaes ssenttdnns asnpglekna lpgsttsnkg kgsqcqsgsa gnecnlgawk
      301 sdpkaksvqs snpaaesnng lgnwrnlsgq erigsgsgfs nfnpnsnpsa wpalvqegss
      361 rkgtlesdsg ssnaqistvg qtsreqqskm enagvnfvsg reqaqihntd gpkngntnsl
      421 nlsspnpmdn kgmpfemglg npsrstdtps qstgerktgs vgswgttrgs sgtdtvsgqs
      481 nsgnhgnngk dredswkgas vqksngsrsd swdnnnrstg gggswnfgpq haneskwgeg
      541 nkltsgvsqg ewkqlsgsde lkigewsgpn qpnsstgawd nqkghplpen qgnsqapcwg
      601 rssssagsev ggqstgsnhk agssdshnsg rrsyrpthpd cqavlqtlls rtdldprvls
      661 ntgwgqtqik qdtvwdieem prpegksdkg tegwessatq tknsggwgdv psqsnqiksg
      721 wgelstptew kdpkntggwn dyknsnssnw gggrteekss sswndssskd qgwggrqpnq
      781 gwssgkngwg eeveqtknsn wesagnkpvs gwgeggqnei gtwgngants aaskggwddc
      841 krnstwnetg rqpnswnkqq qqhhqqqqes sgswgpppqt pnngrppnpn wnsgpqpaap
      901 keeepsgwee pspqsisrkm diddgtsawg dpssynyknv nlwdknsqgg qatreqslpt
      961 pmtsksqasv wskstppapd ngtsawgepn etspgwgevd dtgasttgwg napstapnam
     1021 ksssksmqdg wgesdgpvtg trhssweeee eggvwntags qgsssshnst swgqggkktq
     1081 mkcslkggss dswmnplskq fsnmgllsqt edipgskmdl svgglpdkkf evdkramnlg
     1141 dfndmmrkdr sgfrppnskd mgttdsgpyf ekggnhglfg nstaqsrgmh tpvqplnpsp
     1201 niraqvppqf lspqvsasml kqfpnsglnp glfnmgpqls pqqiamlsql pqipqfqlac
     1261 qlllqqqqqq qllqsqrkls qavrqqqeqq iarmvsalqq qqqrqpgmkh spshpvgpkp
     1321 hldsmvpnpl nvglsdlqtk gqipgygsgf gsssmdygmv ggkeagaesr fkqwtmmegl
     1381 psvasqdanm hkngaivppg karggspynq fdiiqgdplg ghggpagdsw lpakspptnk
     1441 igskssnasw ppefqpgvpw kgiqnidpes dpyvtpgsvl ggtatspivd tdhqllrdnt
     1501 tgsnsslnts lpspgawpys asdnsftnvh stsakfsdyk stwspdpigh npthlsnkmw
     1561 knhissrntt glprpppglt npkpsspwns taprsvrgwg aqdsrlasge knqllaplir
     1621 peectfystn gleerklqls astwsdggsv rpsywlvlhn ltpqidgstl rticmqhgpl
     1681 ltfhlnltqg taliryntkq eaakaqtalh mcvlgnttil aefatdeevs rflaqaqppt
     1741 ptatpsapta gwqsletgqn qtdpvgpaln lfggstglgq wssggsgggs gsdlpgtslw
     1801 gppsyssslw gvpsvedphr mgspapllpg dllgggsdsi
//
LOCUS       XP_053920468            1840 aa            linear   VRT 09-MAR-2023
DEFINITION  trinucleotide repeat-containing gene 6B protein isoform X10
            [Cuculus canorus].
ACCESSION   XP_053920468
VERSION     XP_053920468.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064493.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1840
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1840
                     /product="trinucleotide repeat-containing gene 6B protein
                     isoform X10"
                     /calculated_mol_wt=195383
     Region          <370..>631
                     /region_name="ser_rich_anae_1"
                     /note="serine-rich protein; NF033849"
                     /db_xref="CDD:468206"
     Region          960..1095
                     /region_name="Ago_hook"
                     /note="Argonaute hook; pfam10427"
                     /db_xref="CDD:463088"
     Region          1355..1609
                     /region_name="TNRC6-PABC_bdg"
                     /note="TNRC6-PABC binding domain; pfam16608"
                     /db_xref="CDD:465195"
     Region          1653..1735
                     /region_name="RRM_TNRC6B"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6B protein (TNRC6B);
                     cd12712"
                     /db_xref="CDD:410111"
     CDS             1..1840
                     /gene="TNRC6B"
                     /coded_by="XM_054064493.1:340..5862"
                     /db_xref="GeneID:104055510"
ORIGIN      
        1 mqtdegeile egspkvseme hedfvmeghg ktpppgeenk qekeqereeq lmedkkrkke
       61 dkkkkesaqk vtdqktkvpe vtkpslsqpv aaspignsps ppvnggnnak rvavpngqpp
      121 saarymprev pprfrcqqdh kvllkrgqpp ppscmllggg agppspaapg anpnnaqpvt
      181 gallqsdsgt atdsaiggaa asnyanstwg pgassnsgtn anpthiwdkv ivdgsdmeew
      241 pciaskdaes ssenttdnns asnpglekna lpgsttsnkg kgsqcqsgsa gnecnlgawk
      301 sdpkaksvqs snpaaesnng lgnwrnlsgq erigsgsgfs nfnpnsnpsa wpalvqegss
      361 rkgtlesdsg ssnaqistvg qtsreqqskm enagvnfvsg reqaqihntd gpkngntnsl
      421 nlsspnpmdn kgmpfemglg npsrstdtps qstgerktgs vgswgttrgs sgtdtvsgqs
      481 nsgnhgnngk dredswkgas vqksngsrsd swdnnnrstg gggswnfgpq haneskwgeg
      541 nkltsgvsqg ewkqlsgsde lkigewsgpn qpnsstgawd nqkghplpen qgnsqapcwg
      601 rssssagsev ggqstgsnhk agssdshnsg rrsyrpthpd cqavlqtlls rtdldprvls
      661 ntgwgqtqik qdtvwdieem prpegksdkg tegwessatq tknsggwgdv psqsnqiksg
      721 wgelstptew kdpkntggwn dyknsnssnw gggrteekss sswndssskd qgwggrqpnq
      781 gwssgkngwg eeveqtknsn wesagnkpvs gwgeggqnei gtwgngants aaskggwddc
      841 krnstwnetg rqpnswnkqq qqhhqqqqes sgswgpppqt pnngrppnpn wnsgpqpaap
      901 keeepsgwee pspqsisrkm diddgtsawg dpssynyknv nlwdknsqgg qatreqslpt
      961 pmtsksqasv wskstppapd ngtsawgepn etspgwgevd dtgasttgwg napstapnam
     1021 ksssksmqdg wgesdgpvtg trhssweeee eggvwntags qgsssshnst swgqggkktq
     1081 mkcslkggss dswmnplskq fsnmgllsqt edipgskmdl svgglpdkkf evdkramnlg
     1141 dfndmmrkdr sgfrppnskd mgttdsgpyf ekggnhglfg nstaqsrgmh tpvqplnpsp
     1201 niraqvppqf lspqvsasml kqfpnsglnp glfnmgpqls pqqiamlsql pqipqfqlac
     1261 qlllqqqqqq qllqsqrkls qavrqqqeqq iarmvsalqq qqqrqpgmkh spshpvgpkp
     1321 hldsmvpnpl nvglsdlqtk gqipgygsgf gsssmdygmv ggkeagaesr fkqwtmmegl
     1381 psvasqdanm hkngaivppg karggspynq fdiiqgdplg ghggpagdsw lpakspptnk
     1441 igskssnasw ppefqpgvpw kgiqnidpes dpyvtpgsvl ggtatspivd tdhqllrdnt
     1501 tgsnsslnts lpspgawpys asdnsftnvh stsakfsdyk stwspdpigh npthlsnkmw
     1561 knhissrntt glprpppglt npkpsspwns taprsvrgwg aqdsrlasge knqllaplir
     1621 peectfystn gleerklqls astwsdggsv rpsywlvlhn ltpqidgstl rticmqhgpl
     1681 ltfhlnltqg taliryntkq eaakaqtalh mcvlgnttil aefatdeevs rflaqaqppt
     1741 ptatpsapta gwqsletgqn qtdpvgpaln lfggstglgq wssggsgggs gsdlpgtslw
     1801 gppsyssslw gvpsvedphr mgspapllpg dllgggsdsi
//
LOCUS       XP_053920478            1840 aa            linear   VRT 09-MAR-2023
DEFINITION  trinucleotide repeat-containing gene 6B protein isoform X10
            [Cuculus canorus].
ACCESSION   XP_053920478
VERSION     XP_053920478.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064503.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1840
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1840
                     /product="trinucleotide repeat-containing gene 6B protein
                     isoform X10"
                     /calculated_mol_wt=195383
     Region          <370..>631
                     /region_name="ser_rich_anae_1"
                     /note="serine-rich protein; NF033849"
                     /db_xref="CDD:468206"
     Region          960..1095
                     /region_name="Ago_hook"
                     /note="Argonaute hook; pfam10427"
                     /db_xref="CDD:463088"
     Region          1355..1609
                     /region_name="TNRC6-PABC_bdg"
                     /note="TNRC6-PABC binding domain; pfam16608"
                     /db_xref="CDD:465195"
     Region          1653..1735
                     /region_name="RRM_TNRC6B"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6B protein (TNRC6B);
                     cd12712"
                     /db_xref="CDD:410111"
     CDS             1..1840
                     /gene="TNRC6B"
                     /coded_by="XM_054064503.1:359..5881"
                     /db_xref="GeneID:104055510"
ORIGIN      
        1 mqtdegeile egspkvseme hedfvmeghg ktpppgeenk qekeqereeq lmedkkrkke
       61 dkkkkesaqk vtdqktkvpe vtkpslsqpv aaspignsps ppvnggnnak rvavpngqpp
      121 saarymprev pprfrcqqdh kvllkrgqpp ppscmllggg agppspaapg anpnnaqpvt
      181 gallqsdsgt atdsaiggaa asnyanstwg pgassnsgtn anpthiwdkv ivdgsdmeew
      241 pciaskdaes ssenttdnns asnpglekna lpgsttsnkg kgsqcqsgsa gnecnlgawk
      301 sdpkaksvqs snpaaesnng lgnwrnlsgq erigsgsgfs nfnpnsnpsa wpalvqegss
      361 rkgtlesdsg ssnaqistvg qtsreqqskm enagvnfvsg reqaqihntd gpkngntnsl
      421 nlsspnpmdn kgmpfemglg npsrstdtps qstgerktgs vgswgttrgs sgtdtvsgqs
      481 nsgnhgnngk dredswkgas vqksngsrsd swdnnnrstg gggswnfgpq haneskwgeg
      541 nkltsgvsqg ewkqlsgsde lkigewsgpn qpnsstgawd nqkghplpen qgnsqapcwg
      601 rssssagsev ggqstgsnhk agssdshnsg rrsyrpthpd cqavlqtlls rtdldprvls
      661 ntgwgqtqik qdtvwdieem prpegksdkg tegwessatq tknsggwgdv psqsnqiksg
      721 wgelstptew kdpkntggwn dyknsnssnw gggrteekss sswndssskd qgwggrqpnq
      781 gwssgkngwg eeveqtknsn wesagnkpvs gwgeggqnei gtwgngants aaskggwddc
      841 krnstwnetg rqpnswnkqq qqhhqqqqes sgswgpppqt pnngrppnpn wnsgpqpaap
      901 keeepsgwee pspqsisrkm diddgtsawg dpssynyknv nlwdknsqgg qatreqslpt
      961 pmtsksqasv wskstppapd ngtsawgepn etspgwgevd dtgasttgwg napstapnam
     1021 ksssksmqdg wgesdgpvtg trhssweeee eggvwntags qgsssshnst swgqggkktq
     1081 mkcslkggss dswmnplskq fsnmgllsqt edipgskmdl svgglpdkkf evdkramnlg
     1141 dfndmmrkdr sgfrppnskd mgttdsgpyf ekggnhglfg nstaqsrgmh tpvqplnpsp
     1201 niraqvppqf lspqvsasml kqfpnsglnp glfnmgpqls pqqiamlsql pqipqfqlac
     1261 qlllqqqqqq qllqsqrkls qavrqqqeqq iarmvsalqq qqqrqpgmkh spshpvgpkp
     1321 hldsmvpnpl nvglsdlqtk gqipgygsgf gsssmdygmv ggkeagaesr fkqwtmmegl
     1381 psvasqdanm hkngaivppg karggspynq fdiiqgdplg ghggpagdsw lpakspptnk
     1441 igskssnasw ppefqpgvpw kgiqnidpes dpyvtpgsvl ggtatspivd tdhqllrdnt
     1501 tgsnsslnts lpspgawpys asdnsftnvh stsakfsdyk stwspdpigh npthlsnkmw
     1561 knhissrntt glprpppglt npkpsspwns taprsvrgwg aqdsrlasge knqllaplir
     1621 peectfystn gleerklqls astwsdggsv rpsywlvlhn ltpqidgstl rticmqhgpl
     1681 ltfhlnltqg taliryntkq eaakaqtalh mcvlgnttil aefatdeevs rflaqaqppt
     1741 ptatpsapta gwqsletgqn qtdpvgpaln lfggstglgq wssggsgggs gsdlpgtslw
     1801 gppsyssslw gvpsvedphr mgspapllpg dllgggsdsi
//
LOCUS       XP_053920487            1840 aa            linear   VRT 09-MAR-2023
DEFINITION  trinucleotide repeat-containing gene 6B protein isoform X10
            [Cuculus canorus].
ACCESSION   XP_053920487
VERSION     XP_053920487.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064512.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1840
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1840
                     /product="trinucleotide repeat-containing gene 6B protein
                     isoform X10"
                     /calculated_mol_wt=195383
     Region          <370..>631
                     /region_name="ser_rich_anae_1"
                     /note="serine-rich protein; NF033849"
                     /db_xref="CDD:468206"
     Region          960..1095
                     /region_name="Ago_hook"
                     /note="Argonaute hook; pfam10427"
                     /db_xref="CDD:463088"
     Region          1355..1609
                     /region_name="TNRC6-PABC_bdg"
                     /note="TNRC6-PABC binding domain; pfam16608"
                     /db_xref="CDD:465195"
     Region          1653..1735
                     /region_name="RRM_TNRC6B"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6B protein (TNRC6B);
                     cd12712"
                     /db_xref="CDD:410111"
     CDS             1..1840
                     /gene="TNRC6B"
                     /coded_by="XM_054064512.1:543..6065"
                     /db_xref="GeneID:104055510"
ORIGIN      
        1 mqtdegeile egspkvseme hedfvmeghg ktpppgeenk qekeqereeq lmedkkrkke
       61 dkkkkesaqk vtdqktkvpe vtkpslsqpv aaspignsps ppvnggnnak rvavpngqpp
      121 saarymprev pprfrcqqdh kvllkrgqpp ppscmllggg agppspaapg anpnnaqpvt
      181 gallqsdsgt atdsaiggaa asnyanstwg pgassnsgtn anpthiwdkv ivdgsdmeew
      241 pciaskdaes ssenttdnns asnpglekna lpgsttsnkg kgsqcqsgsa gnecnlgawk
      301 sdpkaksvqs snpaaesnng lgnwrnlsgq erigsgsgfs nfnpnsnpsa wpalvqegss
      361 rkgtlesdsg ssnaqistvg qtsreqqskm enagvnfvsg reqaqihntd gpkngntnsl
      421 nlsspnpmdn kgmpfemglg npsrstdtps qstgerktgs vgswgttrgs sgtdtvsgqs
      481 nsgnhgnngk dredswkgas vqksngsrsd swdnnnrstg gggswnfgpq haneskwgeg
      541 nkltsgvsqg ewkqlsgsde lkigewsgpn qpnsstgawd nqkghplpen qgnsqapcwg
      601 rssssagsev ggqstgsnhk agssdshnsg rrsyrpthpd cqavlqtlls rtdldprvls
      661 ntgwgqtqik qdtvwdieem prpegksdkg tegwessatq tknsggwgdv psqsnqiksg
      721 wgelstptew kdpkntggwn dyknsnssnw gggrteekss sswndssskd qgwggrqpnq
      781 gwssgkngwg eeveqtknsn wesagnkpvs gwgeggqnei gtwgngants aaskggwddc
      841 krnstwnetg rqpnswnkqq qqhhqqqqes sgswgpppqt pnngrppnpn wnsgpqpaap
      901 keeepsgwee pspqsisrkm diddgtsawg dpssynyknv nlwdknsqgg qatreqslpt
      961 pmtsksqasv wskstppapd ngtsawgepn etspgwgevd dtgasttgwg napstapnam
     1021 ksssksmqdg wgesdgpvtg trhssweeee eggvwntags qgsssshnst swgqggkktq
     1081 mkcslkggss dswmnplskq fsnmgllsqt edipgskmdl svgglpdkkf evdkramnlg
     1141 dfndmmrkdr sgfrppnskd mgttdsgpyf ekggnhglfg nstaqsrgmh tpvqplnpsp
     1201 niraqvppqf lspqvsasml kqfpnsglnp glfnmgpqls pqqiamlsql pqipqfqlac
     1261 qlllqqqqqq qllqsqrkls qavrqqqeqq iarmvsalqq qqqrqpgmkh spshpvgpkp
     1321 hldsmvpnpl nvglsdlqtk gqipgygsgf gsssmdygmv ggkeagaesr fkqwtmmegl
     1381 psvasqdanm hkngaivppg karggspynq fdiiqgdplg ghggpagdsw lpakspptnk
     1441 igskssnasw ppefqpgvpw kgiqnidpes dpyvtpgsvl ggtatspivd tdhqllrdnt
     1501 tgsnsslnts lpspgawpys asdnsftnvh stsakfsdyk stwspdpigh npthlsnkmw
     1561 knhissrntt glprpppglt npkpsspwns taprsvrgwg aqdsrlasge knqllaplir
     1621 peectfystn gleerklqls astwsdggsv rpsywlvlhn ltpqidgstl rticmqhgpl
     1681 ltfhlnltqg taliryntkq eaakaqtalh mcvlgnttil aefatdeevs rflaqaqppt
     1741 ptatpsapta gwqsletgqn qtdpvgpaln lfggstglgq wssggsgggs gsdlpgtslw
     1801 gppsyssslw gvpsvedphr mgspapllpg dllgggsdsi
//
LOCUS       XP_053920497            1840 aa            linear   VRT 09-MAR-2023
DEFINITION  trinucleotide repeat-containing gene 6B protein isoform X10
            [Cuculus canorus].
ACCESSION   XP_053920497
VERSION     XP_053920497.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064522.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1840
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1840
                     /product="trinucleotide repeat-containing gene 6B protein
                     isoform X10"
                     /calculated_mol_wt=195383
     Region          <370..>631
                     /region_name="ser_rich_anae_1"
                     /note="serine-rich protein; NF033849"
                     /db_xref="CDD:468206"
     Region          960..1095
                     /region_name="Ago_hook"
                     /note="Argonaute hook; pfam10427"
                     /db_xref="CDD:463088"
     Region          1355..1609
                     /region_name="TNRC6-PABC_bdg"
                     /note="TNRC6-PABC binding domain; pfam16608"
                     /db_xref="CDD:465195"
     Region          1653..1735
                     /region_name="RRM_TNRC6B"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6B protein (TNRC6B);
                     cd12712"
                     /db_xref="CDD:410111"
     CDS             1..1840
                     /gene="TNRC6B"
                     /coded_by="XM_054064522.1:191..5713"
                     /db_xref="GeneID:104055510"
ORIGIN      
        1 mqtdegeile egspkvseme hedfvmeghg ktpppgeenk qekeqereeq lmedkkrkke
       61 dkkkkesaqk vtdqktkvpe vtkpslsqpv aaspignsps ppvnggnnak rvavpngqpp
      121 saarymprev pprfrcqqdh kvllkrgqpp ppscmllggg agppspaapg anpnnaqpvt
      181 gallqsdsgt atdsaiggaa asnyanstwg pgassnsgtn anpthiwdkv ivdgsdmeew
      241 pciaskdaes ssenttdnns asnpglekna lpgsttsnkg kgsqcqsgsa gnecnlgawk
      301 sdpkaksvqs snpaaesnng lgnwrnlsgq erigsgsgfs nfnpnsnpsa wpalvqegss
      361 rkgtlesdsg ssnaqistvg qtsreqqskm enagvnfvsg reqaqihntd gpkngntnsl
      421 nlsspnpmdn kgmpfemglg npsrstdtps qstgerktgs vgswgttrgs sgtdtvsgqs
      481 nsgnhgnngk dredswkgas vqksngsrsd swdnnnrstg gggswnfgpq haneskwgeg
      541 nkltsgvsqg ewkqlsgsde lkigewsgpn qpnsstgawd nqkghplpen qgnsqapcwg
      601 rssssagsev ggqstgsnhk agssdshnsg rrsyrpthpd cqavlqtlls rtdldprvls
      661 ntgwgqtqik qdtvwdieem prpegksdkg tegwessatq tknsggwgdv psqsnqiksg
      721 wgelstptew kdpkntggwn dyknsnssnw gggrteekss sswndssskd qgwggrqpnq
      781 gwssgkngwg eeveqtknsn wesagnkpvs gwgeggqnei gtwgngants aaskggwddc
      841 krnstwnetg rqpnswnkqq qqhhqqqqes sgswgpppqt pnngrppnpn wnsgpqpaap
      901 keeepsgwee pspqsisrkm diddgtsawg dpssynyknv nlwdknsqgg qatreqslpt
      961 pmtsksqasv wskstppapd ngtsawgepn etspgwgevd dtgasttgwg napstapnam
     1021 ksssksmqdg wgesdgpvtg trhssweeee eggvwntags qgsssshnst swgqggkktq
     1081 mkcslkggss dswmnplskq fsnmgllsqt edipgskmdl svgglpdkkf evdkramnlg
     1141 dfndmmrkdr sgfrppnskd mgttdsgpyf ekggnhglfg nstaqsrgmh tpvqplnpsp
     1201 niraqvppqf lspqvsasml kqfpnsglnp glfnmgpqls pqqiamlsql pqipqfqlac
     1261 qlllqqqqqq qllqsqrkls qavrqqqeqq iarmvsalqq qqqrqpgmkh spshpvgpkp
     1321 hldsmvpnpl nvglsdlqtk gqipgygsgf gsssmdygmv ggkeagaesr fkqwtmmegl
     1381 psvasqdanm hkngaivppg karggspynq fdiiqgdplg ghggpagdsw lpakspptnk
     1441 igskssnasw ppefqpgvpw kgiqnidpes dpyvtpgsvl ggtatspivd tdhqllrdnt
     1501 tgsnsslnts lpspgawpys asdnsftnvh stsakfsdyk stwspdpigh npthlsnkmw
     1561 knhissrntt glprpppglt npkpsspwns taprsvrgwg aqdsrlasge knqllaplir
     1621 peectfystn gleerklqls astwsdggsv rpsywlvlhn ltpqidgstl rticmqhgpl
     1681 ltfhlnltqg taliryntkq eaakaqtalh mcvlgnttil aefatdeevs rflaqaqppt
     1741 ptatpsapta gwqsletgqn qtdpvgpaln lfggstglgq wssggsgggs gsdlpgtslw
     1801 gppsyssslw gvpsvedphr mgspapllpg dllgggsdsi
//
LOCUS       XP_053920505            1838 aa            linear   VRT 09-MAR-2023
DEFINITION  trinucleotide repeat-containing gene 6B protein isoform X11
            [Cuculus canorus].
ACCESSION   XP_053920505
VERSION     XP_053920505.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064530.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1838
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1838
                     /product="trinucleotide repeat-containing gene 6B protein
                     isoform X11"
                     /calculated_mol_wt=195655
     Region          <156..514
                     /region_name="MSCRAMM_ClfA"
                     /note="MSCRAMM family adhesin clumping factor ClfA;
                     NF033609"
                     /db_xref="CDD:468110"
     Region          <368..>629
                     /region_name="ser_rich_anae_1"
                     /note="serine-rich protein; NF033849"
                     /db_xref="CDD:468206"
     Region          977..1093
                     /region_name="Ago_hook"
                     /note="Argonaute hook; pfam10427"
                     /db_xref="CDD:463088"
     Region          1353..1607
                     /region_name="TNRC6-PABC_bdg"
                     /note="TNRC6-PABC binding domain; pfam16608"
                     /db_xref="CDD:465195"
     Region          1651..1733
                     /region_name="RRM_TNRC6B"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6B protein (TNRC6B);
                     cd12712"
                     /db_xref="CDD:410111"
     CDS             1..1838
                     /gene="TNRC6B"
                     /coded_by="XM_054064530.1:16..5532"
                     /db_xref="GeneID:104055510"
ORIGIN      
        1 maifqrqyfa flqsfaqilf pcklmrekyw rkavprsvre keqereeqlm edkkrkkedk
       61 kkkesaqkvt dqktkvpevt kpslsqpvaa spignspspp vnggnnakrv avpngqppsa
      121 arymprevpp rfrcqqdhkv llkrgqpppp scmllgggag ppspaapgan pnnaqpvtga
      181 llqsdsgtat dsaiggaaas nyanstwgpg assnsgtnan pthiwdkviv dgsdmeewpc
      241 iaskdaesss enttdnnsas npgleknalp gsttsnkgkg sqcqsgsagn ecnlgawksd
      301 pkaksvqssn paaesnnglg nwrnlsgqer igsgsgfsnf npnsnpsawp alvqegssrk
      361 gtlesdsgss naqistvgqt sreqqskmen agvnfvsgre qaqihntdgp kngntnslnl
      421 sspnpmdnkg mpfemglgnp srstdtpsqs tgerktgsvg swgttrgssg tdtvsgqsns
      481 gnhgnngkdr edswkgasvq ksngsrsdsw dnnnrstggg gswnfgpqha neskwgegnk
      541 ltsgvsqgew kqlsgsdelk igewsgpnqp nsstgawdnq kghplpenqg nsqapcwgrs
      601 sssagsevgg qstgsnhkag ssdshnsgrr syrpthpdcq avlqtllsrt dldprvlsnt
      661 gwgqtqikqd tvwdieempr pegksdkgte gwessatqtk nsggwgdvps qsnqiksgwg
      721 elstptewkd pkntggwndy knsnssnwgg grteekssss wndssskdqg wggrqpnqgw
      781 ssgkngwgee veqtknsnwe sagnkpvsgw geggqneigt wgngantsaa skggwddckr
      841 nstwnetgrq pnswnkqqqq hhqqqqessg swgpppqtpn ngrppnpnwn sgpqpaapke
      901 eepsgweeps pqsisrkmdi ddgtsawgdp ssynyknvnl wdknsqggqa treqslptpm
      961 tsksqasvws kstppapdng tsawgepnet spgwgevddt gasttgwgna pstapnamks
     1021 ssksmqdgwg esdgpvtgtr hssweeeeeg gvwntagsqg sssshnstsw gqggkktqmk
     1081 cslkggssds wmnplskqfs nmgllsqted ipgskmdlsv gglpdkkfev dkramnlgdf
     1141 ndmmrkdrsg frppnskdmg ttdsgpyfek ggnhglfgns taqsrgmhtp vqplnpspni
     1201 raqvppqfls pqvsasmlkq fpnsglnpgl fnmgpqlspq qiamlsqlpq ipqfqlacql
     1261 llqqqqqqql lqsqrklsqa vrqqqeqqia rmvsalqqqq qrqpgmkhsp shpvgpkphl
     1321 dsmvpnplnv glsdlqtkgq ipgygsgfgs ssmdygmvgg keagaesrfk qwtmmeglps
     1381 vasqdanmhk ngaivppgka rggspynqfd iiqgdplggh ggpagdswlp akspptnkig
     1441 skssnaswpp efqpgvpwkg iqnidpesdp yvtpgsvlgg tatspivdtd hqllrdnttg
     1501 snsslntslp spgawpysas dnsftnvhst sakfsdykst wspdpighnp thlsnkmwkn
     1561 hissrnttgl prpppgltnp kpsspwnsta prsvrgwgaq dsrlasgekn qllaplirpe
     1621 ectfystngl eerklqlsas twsdggsvrp sywlvlhnlt pqidgstlrt icmqhgpllt
     1681 fhlnltqgta liryntkqea akaqtalhmc vlgnttilae fatdeevsrf laqaqpptpt
     1741 atpsaptagw qsletgqnqt dpvgpalnlf ggstglgqws sggsgggsgs dlpgtslwgp
     1801 psyssslwgv psvedphrmg spapllpgdl lgggsdsi
//
LOCUS       XP_053920514            1837 aa            linear   VRT 09-MAR-2023
DEFINITION  trinucleotide repeat-containing gene 6B protein isoform X12
            [Cuculus canorus].
ACCESSION   XP_053920514
VERSION     XP_053920514.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064539.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1837
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1837
                     /product="trinucleotide repeat-containing gene 6B protein
                     isoform X12"
                     /calculated_mol_wt=195068
     Region          <367..>628
                     /region_name="ser_rich_anae_1"
                     /note="serine-rich protein; NF033849"
                     /db_xref="CDD:468206"
     Region          957..1092
                     /region_name="Ago_hook"
                     /note="Argonaute hook; pfam10427"
                     /db_xref="CDD:463088"
     Region          1352..1606
                     /region_name="TNRC6-PABC_bdg"
                     /note="TNRC6-PABC binding domain; pfam16608"
                     /db_xref="CDD:465195"
     Region          1650..1732
                     /region_name="RRM_TNRC6B"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6B protein (TNRC6B);
                     cd12712"
                     /db_xref="CDD:410111"
     CDS             1..1837
                     /gene="TNRC6B"
                     /coded_by="XM_054064539.1:271..5784"
                     /db_xref="GeneID:104055510"
ORIGIN      
        1 mqtdegeile egspkmehed fvmeghgktp ppgeenkqek eqereeqlme dkkrkkedkk
       61 kkesaqkvtd qktkvpevtk pslsqpvaas pignspsppv nggnnakrva vpngqppsaa
      121 rymprevppr frcqqdhkvl lkrgqpppps cmllgggagp pspaapganp nnaqpvtgal
      181 lqsdsgtatd saiggaaasn yanstwgpga ssnsgtnanp thiwdkvivd gsdmeewpci
      241 askdaessse nttdnnsasn pgleknalpg sttsnkgkgs qcqsgsagne cnlgawksdp
      301 kaksvqssnp aaesnnglgn wrnlsgqeri gsgsgfsnfn pnsnpsawpa lvqegssrkg
      361 tlesdsgssn aqistvgqts reqqskmena gvnfvsgreq aqihntdgpk ngntnslnls
      421 spnpmdnkgm pfemglgnps rstdtpsqst gerktgsvgs wgttrgssgt dtvsgqsnsg
      481 nhgnngkdre dswkgasvqk sngsrsdswd nnnrstgggg swnfgpqhan eskwgegnkl
      541 tsgvsqgewk qlsgsdelki gewsgpnqpn sstgawdnqk ghplpenqgn sqapcwgrss
      601 ssagsevggq stgsnhkags sdshnsgrrs yrpthpdcqa vlqtllsrtd ldprvlsntg
      661 wgqtqikqdt vwdieemprp egksdkgteg wessatqtkn sggwgdvpsq snqiksgwge
      721 lstptewkdp kntggwndyk nsnssnwggg rteekssssw ndssskdqgw ggrqpnqgws
      781 sgkngwgeev eqtknsnwes agnkpvsgwg eggqneigtw gngantsaas kggwddckrn
      841 stwnetgrqp nswnkqqqqh hqqqqessgs wgpppqtpnn grppnpnwns gpqpaapkee
      901 epsgweepsp qsisrkmdid dgtsawgdps synyknvnlw dknsqggqat reqslptpmt
      961 sksqasvwsk stppapdngt sawgepnets pgwgevddtg asttgwgnap stapnamkss
     1021 sksmqdgwge sdgpvtgtrh ssweeeeegg vwntagsqgs ssshnstswg qggkktqmkc
     1081 slkggssdsw mnplskqfsn mgllsqtedi pgskmdlsvg glpdkkfevd kramnlgdfn
     1141 dmmrkdrsgf rppnskdmgt tdsgpyfekg gnhglfgnst aqsrgmhtpv qplnpspnir
     1201 aqvppqflsp qvsasmlkqf pnsglnpglf nmgpqlspqq iamlsqlpqi pqfqlacqll
     1261 lqqqqqqqll qsqrklsqav rqqqeqqiar mvsalqqqqq rqpgmkhsps hpvgpkphld
     1321 smvpnplnvg lsdlqtkgqi pgygsgfgss smdygmvggk eagaesrfkq wtmmeglpsv
     1381 asqdanmhkn gaivppgkar ggspynqfdi iqgdplgghg gpagdswlpa kspptnkigs
     1441 kssnaswppe fqpgvpwkgi qnidpesdpy vtpgsvlggt atspivdtdh qllrdnttgs
     1501 nsslntslps pgawpysasd nsftnvhsts akfsdykstw spdpighnpt hlsnkmwknh
     1561 issrnttglp rpppgltnpk psspwnstap rsvrgwgaqd srlasgeknq llaplirpee
     1621 ctfystngle erklqlsast wsdggsvrps ywlvlhnltp qidgstlrti cmqhgplltf
     1681 hlnltqgtal iryntkqeaa kaqtalhmcv lgnttilaef atdeevsrfl aqaqpptpta
     1741 tpsaptagwq sletgqnqtd pvgpalnlfg gstglgqwss ggsgggsgsd lpgtslwgpp
     1801 syssslwgvp svedphrmgs papllpgdll gggsdsi
//
LOCUS       XP_053920523            1811 aa            linear   VRT 09-MAR-2023
DEFINITION  trinucleotide repeat-containing gene 6B protein isoform X13
            [Cuculus canorus].
ACCESSION   XP_053920523
VERSION     XP_053920523.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064548.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1811
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1811
                     /product="trinucleotide repeat-containing gene 6B protein
                     isoform X13"
                     /calculated_mol_wt=192209
     Region          <341..>602
                     /region_name="ser_rich_anae_1"
                     /note="serine-rich protein; NF033849"
                     /db_xref="CDD:468206"
     Region          950..1066
                     /region_name="Ago_hook"
                     /note="Argonaute hook; pfam10427"
                     /db_xref="CDD:463088"
     Region          1326..1580
                     /region_name="TNRC6-PABC_bdg"
                     /note="TNRC6-PABC binding domain; pfam16608"
                     /db_xref="CDD:465195"
     Region          1624..1706
                     /region_name="RRM_TNRC6B"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6B protein (TNRC6B);
                     cd12712"
                     /db_xref="CDD:410111"
     CDS             1..1811
                     /gene="TNRC6B"
                     /coded_by="XM_054064548.1:13..5448"
                     /db_xref="GeneID:104055510"
ORIGIN      
        1 mmdflstlil liekeqeree qlmedkkrkk edkkkkesaq kvtdqktkvp evtkpslsqp
       61 vaaspignsp sppvnggnna krvavpngqp psaarympre vpprfrcqqd hkvllkrgqp
      121 pppscmllgg gagppspaap ganpnnaqpv tgallqsdsg tatdsaigga aasnyanstw
      181 gpgassnsgt nanpthiwdk vivdgsdmee wpciaskdae sssenttdnn sasnpglekn
      241 alpgsttsnk gkgsqcqsgs agnecnlgaw ksdpkaksvq ssnpaaesnn glgnwrnlsg
      301 qerigsgsgf snfnpnsnps awpalvqegs srkgtlesds gssnaqistv gqtsreqqsk
      361 menagvnfvs greqaqihnt dgpkngntns lnlsspnpmd nkgmpfemgl gnpsrstdtp
      421 sqstgerktg svgswgttrg ssgtdtvsgq snsgnhgnng kdredswkga svqksngsrs
      481 dswdnnnrst ggggswnfgp qhaneskwge gnkltsgvsq gewkqlsgsd elkigewsgp
      541 nqpnsstgaw dnqkghplpe nqgnsqapcw grssssagse vggqstgsnh kagssdshns
      601 grrsyrpthp dcqavlqtll srtdldprvl sntgwgqtqi kqdtvwdiee mprpegksdk
      661 gtegwessat qtknsggwgd vpsqsnqiks gwgelstpte wkdpkntggw ndyknsnssn
      721 wgggrteeks ssswndsssk dqgwggrqpn qgwssgkngw geeveqtkns nwesagnkpv
      781 sgwgeggqne igtwgngant saaskggwdd ckrnstwnet grqpnswnkq qqqhhqqqqe
      841 ssgswgpppq tpnngrppnp nwnsgpqpaa pkeeepsgwe epspqsisrk mdiddgtsaw
      901 gdpssynykn vnlwdknsqg gqatreqslp tpmtsksqas vwskstppap dngtsawgep
      961 netspgwgev ddtgasttgw gnapstapna mksssksmqd gwgesdgpvt gtrhssweee
     1021 eeggvwntag sqgsssshns tswgqggkkt qmkcslkggs sdswmnplsk qfsnmgllsq
     1081 tedipgskmd lsvgglpdkk fevdkramnl gdfndmmrkd rsgfrppnsk dmgttdsgpy
     1141 fekggnhglf gnstaqsrgm htpvqplnps pniraqvppq flspqvsasm lkqfpnsgln
     1201 pglfnmgpql spqqiamlsq lpqipqfqla cqlllqqqqq qqllqsqrkl sqavrqqqeq
     1261 qiarmvsalq qqqqrqpgmk hspshpvgpk phldsmvpnp lnvglsdlqt kgqipgygsg
     1321 fgsssmdygm vggkeagaes rfkqwtmmeg lpsvasqdan mhkngaivpp gkarggspyn
     1381 qfdiiqgdpl gghggpagds wlpakspptn kigskssnas wppefqpgvp wkgiqnidpe
     1441 sdpyvtpgsv lggtatspiv dtdhqllrdn ttgsnsslnt slpspgawpy sasdnsftnv
     1501 hstsakfsdy kstwspdpig hnpthlsnkm wknhissrnt tglprpppgl tnpkpsspwn
     1561 staprsvrgw gaqdsrlasg eknqllapli rpeectfyst ngleerklql sastwsdggs
     1621 vrpsywlvlh nltpqidgst lrticmqhgp lltfhlnltq gtaliryntk qeaakaqtal
     1681 hmcvlgntti laefatdeev srflaqaqpp tptatpsapt agwqsletgq nqtdpvgpal
     1741 nlfggstglg qwssggsggg sgsdlpgtsl wgppsysssl wgvpsvedph rmgspapllp
     1801 gdllgggsds i
//
LOCUS       XP_053920530            1801 aa            linear   VRT 09-MAR-2023
DEFINITION  trinucleotide repeat-containing gene 6B protein isoform X14
            [Cuculus canorus].
ACCESSION   XP_053920530
VERSION     XP_053920530.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064555.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1801
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1801
                     /product="trinucleotide repeat-containing gene 6B protein
                     isoform X14"
                     /calculated_mol_wt=191105
     Region          <331..>592
                     /region_name="ser_rich_anae_1"
                     /note="serine-rich protein; NF033849"
                     /db_xref="CDD:468206"
     Region          921..1056
                     /region_name="Ago_hook"
                     /note="Argonaute hook; pfam10427"
                     /db_xref="CDD:463088"
     Region          1316..1570
                     /region_name="TNRC6-PABC_bdg"
                     /note="TNRC6-PABC binding domain; pfam16608"
                     /db_xref="CDD:465195"
     Region          1614..1696
                     /region_name="RRM_TNRC6B"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6B protein (TNRC6B);
                     cd12712"
                     /db_xref="CDD:410111"
     CDS             1..1801
                     /gene="TNRC6B"
                     /coded_by="XM_054064555.1:116..5521"
                     /db_xref="GeneID:104055510"
ORIGIN      
        1 mrekeqeree qlmedkkrkk edkkkkesaq kvtdqktkvp evtkpslsqp vaaspignsp
       61 sppvnggnna krvavpngqp psaarympre vpprfrcqqd hkvllkrgqp pppscmllgg
      121 gagppspaap ganpnnaqpv tgallqsdsg tatdsaigga aasnyanstw gpgassnsgt
      181 nanpthiwdk vivdgsdmee wpciaskdae sssenttdnn sasnpglekn alpgsttsnk
      241 gkgsqcqsgs agnecnlgaw ksdpkaksvq ssnpaaesnn glgnwrnlsg qerigsgsgf
      301 snfnpnsnps awpalvqegs srkgtlesds gssnaqistv gqtsreqqsk menagvnfvs
      361 greqaqihnt dgpkngntns lnlsspnpmd nkgmpfemgl gnpsrstdtp sqstgerktg
      421 svgswgttrg ssgtdtvsgq snsgnhgnng kdredswkga svqksngsrs dswdnnnrst
      481 ggggswnfgp qhaneskwge gnkltsgvsq gewkqlsgsd elkigewsgp nqpnsstgaw
      541 dnqkghplpe nqgnsqapcw grssssagse vggqstgsnh kagssdshns grrsyrpthp
      601 dcqavlqtll srtdldprvl sntgwgqtqi kqdtvwdiee mprpegksdk gtegwessat
      661 qtknsggwgd vpsqsnqiks gwgelstpte wkdpkntggw ndyknsnssn wgggrteeks
      721 ssswndsssk dqgwggrqpn qgwssgkngw geeveqtkns nwesagnkpv sgwgeggqne
      781 igtwgngant saaskggwdd ckrnstwnet grqpnswnkq qqqhhqqqqe ssgswgpppq
      841 tpnngrppnp nwnsgpqpaa pkeeepsgwe epspqsisrk mdiddgtsaw gdpssynykn
      901 vnlwdknsqg gqatreqslp tpmtsksqas vwskstppap dngtsawgep netspgwgev
      961 ddtgasttgw gnapstapna mksssksmqd gwgesdgpvt gtrhssweee eeggvwntag
     1021 sqgsssshns tswgqggkkt qmkcslkggs sdswmnplsk qfsnmgllsq tedipgskmd
     1081 lsvgglpdkk fevdkramnl gdfndmmrkd rsgfrppnsk dmgttdsgpy fekggnhglf
     1141 gnstaqsrgm htpvqplnps pniraqvppq flspqvsasm lkqfpnsgln pglfnmgpql
     1201 spqqiamlsq lpqipqfqla cqlllqqqqq qqllqsqrkl sqavrqqqeq qiarmvsalq
     1261 qqqqrqpgmk hspshpvgpk phldsmvpnp lnvglsdlqt kgqipgygsg fgsssmdygm
     1321 vggkeagaes rfkqwtmmeg lpsvasqdan mhkngaivpp gkarggspyn qfdiiqgdpl
     1381 gghggpagds wlpakspptn kigskssnas wppefqpgvp wkgiqnidpe sdpyvtpgsv
     1441 lggtatspiv dtdhqllrdn ttgsnsslnt slpspgawpy sasdnsftnv hstsakfsdy
     1501 kstwspdpig hnpthlsnkm wknhissrnt tglprpppgl tnpkpsspwn staprsvrgw
     1561 gaqdsrlasg eknqllapli rpeectfyst ngleerklql sastwsdggs vrpsywlvlh
     1621 nltpqidgst lrticmqhgp lltfhlnltq gtaliryntk qeaakaqtal hmcvlgntti
     1681 laefatdeev srflaqaqpp tptatpsapt agwqsletgq nqtdpvgpal nlfggstglg
     1741 qwssggsggg sgsdlpgtsl wgppsysssl wgvpsvedph rmgspapllp gdllgggsds
     1801 i
//
LOCUS       XP_053920538            1789 aa            linear   VRT 09-MAR-2023
DEFINITION  trinucleotide repeat-containing gene 6B protein isoform X15
            [Cuculus canorus].
ACCESSION   XP_053920538
VERSION     XP_053920538.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064563.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1789
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1789
                     /product="trinucleotide repeat-containing gene 6B protein
                     isoform X15"
                     /calculated_mol_wt=189518
     Region          <319..>580
                     /region_name="ser_rich_anae_1"
                     /note="serine-rich protein; NF033849"
                     /db_xref="CDD:468206"
     Region          909..1044
                     /region_name="Ago_hook"
                     /note="Argonaute hook; pfam10427"
                     /db_xref="CDD:463088"
     Region          1304..1558
                     /region_name="TNRC6-PABC_bdg"
                     /note="TNRC6-PABC binding domain; pfam16608"
                     /db_xref="CDD:465195"
     Region          1602..1684
                     /region_name="RRM_TNRC6B"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6B protein (TNRC6B);
                     cd12712"
                     /db_xref="CDD:410111"
     CDS             1..1789
                     /gene="TNRC6B"
                     /coded_by="XM_054064563.1:247..5616"
                     /db_xref="GeneID:104055510"
ORIGIN      
        1 medkkrkked kkkkesaqkv tdqktkvpev tkpslsqpva aspignspsp pvnggnnakr
       61 vavpngqpps aarymprevp prfrcqqdhk vllkrgqppp pscmllggga gppspaapga
      121 npnnaqpvtg allqsdsgta tdsaiggaaa snyanstwgp gassnsgtna npthiwdkvi
      181 vdgsdmeewp ciaskdaess senttdnnsa snpgleknal pgsttsnkgk gsqcqsgsag
      241 necnlgawks dpkaksvqss npaaesnngl gnwrnlsgqe rigsgsgfsn fnpnsnpsaw
      301 palvqegssr kgtlesdsgs snaqistvgq tsreqqskme nagvnfvsgr eqaqihntdg
      361 pkngntnsln lsspnpmdnk gmpfemglgn psrstdtpsq stgerktgsv gswgttrgss
      421 gtdtvsgqsn sgnhgnngkd redswkgasv qksngsrsds wdnnnrstgg ggswnfgpqh
      481 aneskwgegn kltsgvsqge wkqlsgsdel kigewsgpnq pnsstgawdn qkghplpenq
      541 gnsqapcwgr ssssagsevg gqstgsnhka gssdshnsgr rsyrpthpdc qavlqtllsr
      601 tdldprvlsn tgwgqtqikq dtvwdieemp rpegksdkgt egwessatqt knsggwgdvp
      661 sqsnqiksgw gelstptewk dpkntggwnd yknsnssnwg ggrteeksss swndssskdq
      721 gwggrqpnqg wssgkngwge eveqtknsnw esagnkpvsg wgeggqneig twgngantsa
      781 askggwddck rnstwnetgr qpnswnkqqq qhhqqqqess gswgpppqtp nngrppnpnw
      841 nsgpqpaapk eeepsgweep spqsisrkmd iddgtsawgd pssynyknvn lwdknsqggq
      901 atreqslptp mtsksqasvw skstppapdn gtsawgepne tspgwgevdd tgasttgwgn
      961 apstapnamk sssksmqdgw gesdgpvtgt rhssweeeee ggvwntagsq gsssshnsts
     1021 wgqggkktqm kcslkggssd swmnplskqf snmgllsqte dipgskmdls vgglpdkkfe
     1081 vdkramnlgd fndmmrkdrs gfrppnskdm gttdsgpyfe kggnhglfgn staqsrgmht
     1141 pvqplnpspn iraqvppqfl spqvsasmlk qfpnsglnpg lfnmgpqlsp qqiamlsqlp
     1201 qipqfqlacq lllqqqqqqq llqsqrklsq avrqqqeqqi armvsalqqq qqrqpgmkhs
     1261 pshpvgpkph ldsmvpnpln vglsdlqtkg qipgygsgfg sssmdygmvg gkeagaesrf
     1321 kqwtmmeglp svasqdanmh kngaivppgk arggspynqf diiqgdplgg hggpagdswl
     1381 pakspptnki gskssnaswp pefqpgvpwk giqnidpesd pyvtpgsvlg gtatspivdt
     1441 dhqllrdntt gsnsslntsl pspgawpysa sdnsftnvhs tsakfsdyks twspdpighn
     1501 pthlsnkmwk nhissrnttg lprpppgltn pkpsspwnst aprsvrgwga qdsrlasgek
     1561 nqllaplirp eectfystng leerklqlsa stwsdggsvr psywlvlhnl tpqidgstlr
     1621 ticmqhgpll tfhlnltqgt aliryntkqe aakaqtalhm cvlgnttila efatdeevsr
     1681 flaqaqpptp tatpsaptag wqsletgqnq tdpvgpalnl fggstglgqw ssggsgggsg
     1741 sdlpgtslwg ppsyssslwg vpsvedphrm gspapllpgd llgggsdsi
//
LOCUS       XP_053920547            1814 aa            linear   VRT 09-MAR-2023
DEFINITION  trinucleotide repeat-containing gene 6B protein isoform X16
            [Cuculus canorus].
ACCESSION   XP_053920547
VERSION     XP_053920547.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064572.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1814
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1814
                     /product="trinucleotide repeat-containing gene 6B protein
                     isoform X16"
                     /calculated_mol_wt=192762
     Region          <344..>605
                     /region_name="ser_rich_anae_1"
                     /note="serine-rich protein; NF033849"
                     /db_xref="CDD:468206"
     Region          934..1069
                     /region_name="Ago_hook"
                     /note="Argonaute hook; pfam10427"
                     /db_xref="CDD:463088"
     Region          1329..1583
                     /region_name="TNRC6-PABC_bdg"
                     /note="TNRC6-PABC binding domain; pfam16608"
                     /db_xref="CDD:465195"
     Region          1627..1709
                     /region_name="RRM_TNRC6B"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6B protein (TNRC6B);
                     cd12712"
                     /db_xref="CDD:410111"
     CDS             1..1814
                     /gene="TNRC6B"
                     /coded_by="XM_054064572.1:358..5802"
                     /db_xref="GeneID:104055510"
ORIGIN      
        1 mrekywrkav prsvrekeqe reeqlmedkk rkkedkkkke saqkvtdqkt kvpevtkpsl
       61 sqpvaaspig nspsppvngg nnakrvavpn gqppsaarym prevpprfrc qqdhkvllkr
      121 gqppppscml lgggagppsp aapganpnna qpvtgallqs dsgtatdsai ggaaasnyan
      181 stwgpgassn sgtnanpthi wdkvivdgsd meewpciask daesssentt dnnsasnpgl
      241 eknalpgstt snkgkgsqcq sgsagnecnl gawksdpkak svqssnpaae snnglgnwrn
      301 lsgqerigsg sgfsnfnpns npsawpalvq egssrkgtle sdsgssnaqi stvgqtsreq
      361 qskmenagvn fvsgreqaqi hntdgpkngn tnslnlsspn pmdnkgmpfe mglgnpsrst
      421 dtpsqstger ktgsvgswgt trgssgtdtv sgqsnsgnhg nngkdredsw kgasvqksng
      481 srsdswdnnn rstggggswn fgpqhanesk wgegnkltsg vsqgewkqls gsdelkigew
      541 sgpnqpnsst gawdnqkghp lpenqgnsqa pcwgrssssa gsevggqstg snhkagssds
      601 hnsgrrsyrp thpdcqavlq tllsrtdldp rvlsntgwgq tqikqdtvwd ieemprpegk
      661 sdkgtegwes satqtknsgg wgdvpsqsnq iksgwgelst ptewkdpknt ggwndyknsn
      721 ssnwgggrte eksssswnds sskdqgwggr qpnqgwssgk ngwgeeveqt knsnwesagn
      781 kpvsgwgegg qneigtwgng antsaaskgg wddckrnstw netgrqpnsw nkqqqqhhqq
      841 qqessgswgp ppqtpnngrp pnpnwnsgpq paapkeeeps gweepspqsi srkmdiddgt
      901 sawgdpssyn yknvnlwdkn sqggqatreq slptpmtsks qasvwskstp papdngtsaw
      961 gepnetspgw gevddtgast tgwgnapsta pnamksssks mqdgwgesdg pvtgtrhssw
     1021 eeeeeggvwn tagsqgssss hnstswgqgg kktqmkcslk ggssdswmnp lskqfsnmgl
     1081 lsqtedipgs kmdlsvgglp dkkfevdkra mnlgdfndmm rkdrsgfrpp nskdmgttds
     1141 gpyfekggnh glfgnstaqs rgmhtpvqpl npspniraqv ppqflspqvs asmlkqfpns
     1201 glnpglfnmg pqlspqqiam lsqlpqipqf qlacqlllqq qqqqqllqsq rklsqavrqq
     1261 qeqqiarmvs alqqqqqrqp gmkhspshpv gpkphldsmv pnplnvglsd lqtkgqipgy
     1321 gsgfgsssmd ygmvggkeag aesrfkqwtm meglpsvasq danmhkngai vppgkarggs
     1381 pynqfdiiqg dplgghggpa gdswlpaksp ptnkigskss naswppefqp gvpwkgiqni
     1441 dpesdpyvtp gsvlggtats pivdtdhqll rdnttgsnss lntslpspga wpysasdnsf
     1501 tnvhstsakf sdykstwspd pighnpthls nkmwknhiss rnttglprpp pgltnpkpss
     1561 pwnstaprsv rgwgaqdsrl asgeknqlla plirpeectf ystngleerk lqlsastwsd
     1621 ggsvrpsywl vlhnltpqid gstlrticmq hgplltfhln ltqgtaliry ntkqeaakaq
     1681 talhmcvlgn ttilaefatd eevsrflaqa qpptptatps aptagwqsle tgqnqtdpvg
     1741 palnlfggst glgqwssggs gggsgsdlpg tslwgppsys sslwgvpsve dphrmgspap
     1801 llpgdllggg sdsi
//
LOCUS       XP_053920558            1814 aa            linear   VRT 09-MAR-2023
DEFINITION  trinucleotide repeat-containing gene 6B protein isoform X16
            [Cuculus canorus].
ACCESSION   XP_053920558
VERSION     XP_053920558.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064583.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1814
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1814
                     /product="trinucleotide repeat-containing gene 6B protein
                     isoform X16"
                     /calculated_mol_wt=192762
     Region          <344..>605
                     /region_name="ser_rich_anae_1"
                     /note="serine-rich protein; NF033849"
                     /db_xref="CDD:468206"
     Region          934..1069
                     /region_name="Ago_hook"
                     /note="Argonaute hook; pfam10427"
                     /db_xref="CDD:463088"
     Region          1329..1583
                     /region_name="TNRC6-PABC_bdg"
                     /note="TNRC6-PABC binding domain; pfam16608"
                     /db_xref="CDD:465195"
     Region          1627..1709
                     /region_name="RRM_TNRC6B"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6B protein (TNRC6B);
                     cd12712"
                     /db_xref="CDD:410111"
     CDS             1..1814
                     /gene="TNRC6B"
                     /coded_by="XM_054064583.1:355..5799"
                     /db_xref="GeneID:104055510"
ORIGIN      
        1 mrekywrkav prsvrekeqe reeqlmedkk rkkedkkkke saqkvtdqkt kvpevtkpsl
       61 sqpvaaspig nspsppvngg nnakrvavpn gqppsaarym prevpprfrc qqdhkvllkr
      121 gqppppscml lgggagppsp aapganpnna qpvtgallqs dsgtatdsai ggaaasnyan
      181 stwgpgassn sgtnanpthi wdkvivdgsd meewpciask daesssentt dnnsasnpgl
      241 eknalpgstt snkgkgsqcq sgsagnecnl gawksdpkak svqssnpaae snnglgnwrn
      301 lsgqerigsg sgfsnfnpns npsawpalvq egssrkgtle sdsgssnaqi stvgqtsreq
      361 qskmenagvn fvsgreqaqi hntdgpkngn tnslnlsspn pmdnkgmpfe mglgnpsrst
      421 dtpsqstger ktgsvgswgt trgssgtdtv sgqsnsgnhg nngkdredsw kgasvqksng
      481 srsdswdnnn rstggggswn fgpqhanesk wgegnkltsg vsqgewkqls gsdelkigew
      541 sgpnqpnsst gawdnqkghp lpenqgnsqa pcwgrssssa gsevggqstg snhkagssds
      601 hnsgrrsyrp thpdcqavlq tllsrtdldp rvlsntgwgq tqikqdtvwd ieemprpegk
      661 sdkgtegwes satqtknsgg wgdvpsqsnq iksgwgelst ptewkdpknt ggwndyknsn
      721 ssnwgggrte eksssswnds sskdqgwggr qpnqgwssgk ngwgeeveqt knsnwesagn
      781 kpvsgwgegg qneigtwgng antsaaskgg wddckrnstw netgrqpnsw nkqqqqhhqq
      841 qqessgswgp ppqtpnngrp pnpnwnsgpq paapkeeeps gweepspqsi srkmdiddgt
      901 sawgdpssyn yknvnlwdkn sqggqatreq slptpmtsks qasvwskstp papdngtsaw
      961 gepnetspgw gevddtgast tgwgnapsta pnamksssks mqdgwgesdg pvtgtrhssw
     1021 eeeeeggvwn tagsqgssss hnstswgqgg kktqmkcslk ggssdswmnp lskqfsnmgl
     1081 lsqtedipgs kmdlsvgglp dkkfevdkra mnlgdfndmm rkdrsgfrpp nskdmgttds
     1141 gpyfekggnh glfgnstaqs rgmhtpvqpl npspniraqv ppqflspqvs asmlkqfpns
     1201 glnpglfnmg pqlspqqiam lsqlpqipqf qlacqlllqq qqqqqllqsq rklsqavrqq
     1261 qeqqiarmvs alqqqqqrqp gmkhspshpv gpkphldsmv pnplnvglsd lqtkgqipgy
     1321 gsgfgsssmd ygmvggkeag aesrfkqwtm meglpsvasq danmhkngai vppgkarggs
     1381 pynqfdiiqg dplgghggpa gdswlpaksp ptnkigskss naswppefqp gvpwkgiqni
     1441 dpesdpyvtp gsvlggtats pivdtdhqll rdnttgsnss lntslpspga wpysasdnsf
     1501 tnvhstsakf sdykstwspd pighnpthls nkmwknhiss rnttglprpp pgltnpkpss
     1561 pwnstaprsv rgwgaqdsrl asgeknqlla plirpeectf ystngleerk lqlsastwsd
     1621 ggsvrpsywl vlhnltpqid gstlrticmq hgplltfhln ltqgtaliry ntkqeaakaq
     1681 talhmcvlgn ttilaefatd eevsrflaqa qpptptatps aptagwqsle tgqnqtdpvg
     1741 palnlfggst glgqwssggs gggsgsdlpg tslwgppsys sslwgvpsve dphrmgspap
     1801 llpgdllggg sdsi
//
LOCUS       XP_053920567            1814 aa            linear   VRT 09-MAR-2023
DEFINITION  trinucleotide repeat-containing gene 6B protein isoform X16
            [Cuculus canorus].
ACCESSION   XP_053920567
VERSION     XP_053920567.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064592.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1814
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1814
                     /product="trinucleotide repeat-containing gene 6B protein
                     isoform X16"
                     /calculated_mol_wt=192762
     Region          <344..>605
                     /region_name="ser_rich_anae_1"
                     /note="serine-rich protein; NF033849"
                     /db_xref="CDD:468206"
     Region          934..1069
                     /region_name="Ago_hook"
                     /note="Argonaute hook; pfam10427"
                     /db_xref="CDD:463088"
     Region          1329..1583
                     /region_name="TNRC6-PABC_bdg"
                     /note="TNRC6-PABC binding domain; pfam16608"
                     /db_xref="CDD:465195"
     Region          1627..1709
                     /region_name="RRM_TNRC6B"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6B protein (TNRC6B);
                     cd12712"
                     /db_xref="CDD:410111"
     CDS             1..1814
                     /gene="TNRC6B"
                     /coded_by="XM_054064592.1:275..5719"
                     /db_xref="GeneID:104055510"
ORIGIN      
        1 mrekywrkav prsvrekeqe reeqlmedkk rkkedkkkke saqkvtdqkt kvpevtkpsl
       61 sqpvaaspig nspsppvngg nnakrvavpn gqppsaarym prevpprfrc qqdhkvllkr
      121 gqppppscml lgggagppsp aapganpnna qpvtgallqs dsgtatdsai ggaaasnyan
      181 stwgpgassn sgtnanpthi wdkvivdgsd meewpciask daesssentt dnnsasnpgl
      241 eknalpgstt snkgkgsqcq sgsagnecnl gawksdpkak svqssnpaae snnglgnwrn
      301 lsgqerigsg sgfsnfnpns npsawpalvq egssrkgtle sdsgssnaqi stvgqtsreq
      361 qskmenagvn fvsgreqaqi hntdgpkngn tnslnlsspn pmdnkgmpfe mglgnpsrst
      421 dtpsqstger ktgsvgswgt trgssgtdtv sgqsnsgnhg nngkdredsw kgasvqksng
      481 srsdswdnnn rstggggswn fgpqhanesk wgegnkltsg vsqgewkqls gsdelkigew
      541 sgpnqpnsst gawdnqkghp lpenqgnsqa pcwgrssssa gsevggqstg snhkagssds
      601 hnsgrrsyrp thpdcqavlq tllsrtdldp rvlsntgwgq tqikqdtvwd ieemprpegk
      661 sdkgtegwes satqtknsgg wgdvpsqsnq iksgwgelst ptewkdpknt ggwndyknsn
      721 ssnwgggrte eksssswnds sskdqgwggr qpnqgwssgk ngwgeeveqt knsnwesagn
      781 kpvsgwgegg qneigtwgng antsaaskgg wddckrnstw netgrqpnsw nkqqqqhhqq
      841 qqessgswgp ppqtpnngrp pnpnwnsgpq paapkeeeps gweepspqsi srkmdiddgt
      901 sawgdpssyn yknvnlwdkn sqggqatreq slptpmtsks qasvwskstp papdngtsaw
      961 gepnetspgw gevddtgast tgwgnapsta pnamksssks mqdgwgesdg pvtgtrhssw
     1021 eeeeeggvwn tagsqgssss hnstswgqgg kktqmkcslk ggssdswmnp lskqfsnmgl
     1081 lsqtedipgs kmdlsvgglp dkkfevdkra mnlgdfndmm rkdrsgfrpp nskdmgttds
     1141 gpyfekggnh glfgnstaqs rgmhtpvqpl npspniraqv ppqflspqvs asmlkqfpns
     1201 glnpglfnmg pqlspqqiam lsqlpqipqf qlacqlllqq qqqqqllqsq rklsqavrqq
     1261 qeqqiarmvs alqqqqqrqp gmkhspshpv gpkphldsmv pnplnvglsd lqtkgqipgy
     1321 gsgfgsssmd ygmvggkeag aesrfkqwtm meglpsvasq danmhkngai vppgkarggs
     1381 pynqfdiiqg dplgghggpa gdswlpaksp ptnkigskss naswppefqp gvpwkgiqni
     1441 dpesdpyvtp gsvlggtats pivdtdhqll rdnttgsnss lntslpspga wpysasdnsf
     1501 tnvhstsakf sdykstwspd pighnpthls nkmwknhiss rnttglprpp pgltnpkpss
     1561 pwnstaprsv rgwgaqdsrl asgeknqlla plirpeectf ystngleerk lqlsastwsd
     1621 ggsvrpsywl vlhnltpqid gstlrticmq hgplltfhln ltqgtaliry ntkqeaakaq
     1681 talhmcvlgn ttilaefatd eevsrflaqa qpptptatps aptagwqsle tgqnqtdpvg
     1741 palnlfggst glgqwssggs gggsgsdlpg tslwgppsys sslwgvpsve dphrmgspap
     1801 llpgdllggg sdsi
//
LOCUS       XP_053920574            1814 aa            linear   VRT 09-MAR-2023
DEFINITION  trinucleotide repeat-containing gene 6B protein isoform X16
            [Cuculus canorus].
ACCESSION   XP_053920574
VERSION     XP_053920574.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064599.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1814
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1814
                     /product="trinucleotide repeat-containing gene 6B protein
                     isoform X16"
                     /calculated_mol_wt=192762
     Region          <344..>605
                     /region_name="ser_rich_anae_1"
                     /note="serine-rich protein; NF033849"
                     /db_xref="CDD:468206"
     Region          934..1069
                     /region_name="Ago_hook"
                     /note="Argonaute hook; pfam10427"
                     /db_xref="CDD:463088"
     Region          1329..1583
                     /region_name="TNRC6-PABC_bdg"
                     /note="TNRC6-PABC binding domain; pfam16608"
                     /db_xref="CDD:465195"
     Region          1627..1709
                     /region_name="RRM_TNRC6B"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6B protein (TNRC6B);
                     cd12712"
                     /db_xref="CDD:410111"
     CDS             1..1814
                     /gene="TNRC6B"
                     /coded_by="XM_054064599.1:197..5641"
                     /db_xref="GeneID:104055510"
ORIGIN      
        1 mrekywrkav prsvrekeqe reeqlmedkk rkkedkkkke saqkvtdqkt kvpevtkpsl
       61 sqpvaaspig nspsppvngg nnakrvavpn gqppsaarym prevpprfrc qqdhkvllkr
      121 gqppppscml lgggagppsp aapganpnna qpvtgallqs dsgtatdsai ggaaasnyan
      181 stwgpgassn sgtnanpthi wdkvivdgsd meewpciask daesssentt dnnsasnpgl
      241 eknalpgstt snkgkgsqcq sgsagnecnl gawksdpkak svqssnpaae snnglgnwrn
      301 lsgqerigsg sgfsnfnpns npsawpalvq egssrkgtle sdsgssnaqi stvgqtsreq
      361 qskmenagvn fvsgreqaqi hntdgpkngn tnslnlsspn pmdnkgmpfe mglgnpsrst
      421 dtpsqstger ktgsvgswgt trgssgtdtv sgqsnsgnhg nngkdredsw kgasvqksng
      481 srsdswdnnn rstggggswn fgpqhanesk wgegnkltsg vsqgewkqls gsdelkigew
      541 sgpnqpnsst gawdnqkghp lpenqgnsqa pcwgrssssa gsevggqstg snhkagssds
      601 hnsgrrsyrp thpdcqavlq tllsrtdldp rvlsntgwgq tqikqdtvwd ieemprpegk
      661 sdkgtegwes satqtknsgg wgdvpsqsnq iksgwgelst ptewkdpknt ggwndyknsn
      721 ssnwgggrte eksssswnds sskdqgwggr qpnqgwssgk ngwgeeveqt knsnwesagn
      781 kpvsgwgegg qneigtwgng antsaaskgg wddckrnstw netgrqpnsw nkqqqqhhqq
      841 qqessgswgp ppqtpnngrp pnpnwnsgpq paapkeeeps gweepspqsi srkmdiddgt
      901 sawgdpssyn yknvnlwdkn sqggqatreq slptpmtsks qasvwskstp papdngtsaw
      961 gepnetspgw gevddtgast tgwgnapsta pnamksssks mqdgwgesdg pvtgtrhssw
     1021 eeeeeggvwn tagsqgssss hnstswgqgg kktqmkcslk ggssdswmnp lskqfsnmgl
     1081 lsqtedipgs kmdlsvgglp dkkfevdkra mnlgdfndmm rkdrsgfrpp nskdmgttds
     1141 gpyfekggnh glfgnstaqs rgmhtpvqpl npspniraqv ppqflspqvs asmlkqfpns
     1201 glnpglfnmg pqlspqqiam lsqlpqipqf qlacqlllqq qqqqqllqsq rklsqavrqq
     1261 qeqqiarmvs alqqqqqrqp gmkhspshpv gpkphldsmv pnplnvglsd lqtkgqipgy
     1321 gsgfgsssmd ygmvggkeag aesrfkqwtm meglpsvasq danmhkngai vppgkarggs
     1381 pynqfdiiqg dplgghggpa gdswlpaksp ptnkigskss naswppefqp gvpwkgiqni
     1441 dpesdpyvtp gsvlggtats pivdtdhqll rdnttgsnss lntslpspga wpysasdnsf
     1501 tnvhstsakf sdykstwspd pighnpthls nkmwknhiss rnttglprpp pgltnpkpss
     1561 pwnstaprsv rgwgaqdsrl asgeknqlla plirpeectf ystngleerk lqlsastwsd
     1621 ggsvrpsywl vlhnltpqid gstlrticmq hgplltfhln ltqgtaliry ntkqeaakaq
     1681 talhmcvlgn ttilaefatd eevsrflaqa qpptptatps aptagwqsle tgqnqtdpvg
     1741 palnlfggst glgqwssggs gggsgsdlpg tslwgppsys sslwgvpsve dphrmgspap
     1801 llpgdllggg sdsi
//
LOCUS       XP_053920584            1814 aa            linear   VRT 09-MAR-2023
DEFINITION  trinucleotide repeat-containing gene 6B protein isoform X16
            [Cuculus canorus].
ACCESSION   XP_053920584
VERSION     XP_053920584.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064609.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1814
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1814
                     /product="trinucleotide repeat-containing gene 6B protein
                     isoform X16"
                     /calculated_mol_wt=192762
     Region          <344..>605
                     /region_name="ser_rich_anae_1"
                     /note="serine-rich protein; NF033849"
                     /db_xref="CDD:468206"
     Region          934..1069
                     /region_name="Ago_hook"
                     /note="Argonaute hook; pfam10427"
                     /db_xref="CDD:463088"
     Region          1329..1583
                     /region_name="TNRC6-PABC_bdg"
                     /note="TNRC6-PABC binding domain; pfam16608"
                     /db_xref="CDD:465195"
     Region          1627..1709
                     /region_name="RRM_TNRC6B"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6B protein (TNRC6B);
                     cd12712"
                     /db_xref="CDD:410111"
     CDS             1..1814
                     /gene="TNRC6B"
                     /coded_by="XM_054064609.1:162..5606"
                     /db_xref="GeneID:104055510"
ORIGIN      
        1 mrekywrkav prsvrekeqe reeqlmedkk rkkedkkkke saqkvtdqkt kvpevtkpsl
       61 sqpvaaspig nspsppvngg nnakrvavpn gqppsaarym prevpprfrc qqdhkvllkr
      121 gqppppscml lgggagppsp aapganpnna qpvtgallqs dsgtatdsai ggaaasnyan
      181 stwgpgassn sgtnanpthi wdkvivdgsd meewpciask daesssentt dnnsasnpgl
      241 eknalpgstt snkgkgsqcq sgsagnecnl gawksdpkak svqssnpaae snnglgnwrn
      301 lsgqerigsg sgfsnfnpns npsawpalvq egssrkgtle sdsgssnaqi stvgqtsreq
      361 qskmenagvn fvsgreqaqi hntdgpkngn tnslnlsspn pmdnkgmpfe mglgnpsrst
      421 dtpsqstger ktgsvgswgt trgssgtdtv sgqsnsgnhg nngkdredsw kgasvqksng
      481 srsdswdnnn rstggggswn fgpqhanesk wgegnkltsg vsqgewkqls gsdelkigew
      541 sgpnqpnsst gawdnqkghp lpenqgnsqa pcwgrssssa gsevggqstg snhkagssds
      601 hnsgrrsyrp thpdcqavlq tllsrtdldp rvlsntgwgq tqikqdtvwd ieemprpegk
      661 sdkgtegwes satqtknsgg wgdvpsqsnq iksgwgelst ptewkdpknt ggwndyknsn
      721 ssnwgggrte eksssswnds sskdqgwggr qpnqgwssgk ngwgeeveqt knsnwesagn
      781 kpvsgwgegg qneigtwgng antsaaskgg wddckrnstw netgrqpnsw nkqqqqhhqq
      841 qqessgswgp ppqtpnngrp pnpnwnsgpq paapkeeeps gweepspqsi srkmdiddgt
      901 sawgdpssyn yknvnlwdkn sqggqatreq slptpmtsks qasvwskstp papdngtsaw
      961 gepnetspgw gevddtgast tgwgnapsta pnamksssks mqdgwgesdg pvtgtrhssw
     1021 eeeeeggvwn tagsqgssss hnstswgqgg kktqmkcslk ggssdswmnp lskqfsnmgl
     1081 lsqtedipgs kmdlsvgglp dkkfevdkra mnlgdfndmm rkdrsgfrpp nskdmgttds
     1141 gpyfekggnh glfgnstaqs rgmhtpvqpl npspniraqv ppqflspqvs asmlkqfpns
     1201 glnpglfnmg pqlspqqiam lsqlpqipqf qlacqlllqq qqqqqllqsq rklsqavrqq
     1261 qeqqiarmvs alqqqqqrqp gmkhspshpv gpkphldsmv pnplnvglsd lqtkgqipgy
     1321 gsgfgsssmd ygmvggkeag aesrfkqwtm meglpsvasq danmhkngai vppgkarggs
     1381 pynqfdiiqg dplgghggpa gdswlpaksp ptnkigskss naswppefqp gvpwkgiqni
     1441 dpesdpyvtp gsvlggtats pivdtdhqll rdnttgsnss lntslpspga wpysasdnsf
     1501 tnvhstsakf sdykstwspd pighnpthls nkmwknhiss rnttglprpp pgltnpkpss
     1561 pwnstaprsv rgwgaqdsrl asgeknqlla plirpeectf ystngleerk lqlsastwsd
     1621 ggsvrpsywl vlhnltpqid gstlrticmq hgplltfhln ltqgtaliry ntkqeaakaq
     1681 talhmcvlgn ttilaefatd eevsrflaqa qpptptatps aptagwqsle tgqnqtdpvg
     1741 palnlfggst glgqwssggs gggsgsdlpg tslwgppsys sslwgvpsve dphrmgspap
     1801 llpgdllggg sdsi
//
LOCUS       XP_053920595            1808 aa            linear   VRT 09-MAR-2023
DEFINITION  trinucleotide repeat-containing gene 6B protein isoform X17
            [Cuculus canorus].
ACCESSION   XP_053920595
VERSION     XP_053920595.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064620.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1808
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1808
                     /product="trinucleotide repeat-containing gene 6B protein
                     isoform X17"
                     /calculated_mol_wt=191723
     Region          <370..>631
                     /region_name="ser_rich_anae_1"
                     /note="serine-rich protein; NF033849"
                     /db_xref="CDD:468206"
     Region          960..1095
                     /region_name="Ago_hook"
                     /note="Argonaute hook; pfam10427"
                     /db_xref="CDD:463088"
     Region          1355..1619
                     /region_name="TNRC6-PABC_bdg"
                     /note="TNRC6-PABC binding domain; pfam16608"
                     /db_xref="CDD:465195"
     Region          1621..1703
                     /region_name="RRM_TNRC6B"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6B protein (TNRC6B);
                     cd12712"
                     /db_xref="CDD:410111"
     CDS             1..1808
                     /gene="TNRC6B"
                     /coded_by="XM_054064620.1:271..5697"
                     /db_xref="GeneID:104055510"
ORIGIN      
        1 mqtdegeile egspkvseme hedfvmeghg ktpppgeenk qekeqereeq lmedkkrkke
       61 dkkkkesaqk vtdqktkvpe vtkpslsqpv aaspignsps ppvnggnnak rvavpngqpp
      121 saarymprev pprfrcqqdh kvllkrgqpp ppscmllggg agppspaapg anpnnaqpvt
      181 gallqsdsgt atdsaiggaa asnyanstwg pgassnsgtn anpthiwdkv ivdgsdmeew
      241 pciaskdaes ssenttdnns asnpglekna lpgsttsnkg kgsqcqsgsa gnecnlgawk
      301 sdpkaksvqs snpaaesnng lgnwrnlsgq erigsgsgfs nfnpnsnpsa wpalvqegss
      361 rkgtlesdsg ssnaqistvg qtsreqqskm enagvnfvsg reqaqihntd gpkngntnsl
      421 nlsspnpmdn kgmpfemglg npsrstdtps qstgerktgs vgswgttrgs sgtdtvsgqs
      481 nsgnhgnngk dredswkgas vqksngsrsd swdnnnrstg gggswnfgpq haneskwgeg
      541 nkltsgvsqg ewkqlsgsde lkigewsgpn qpnsstgawd nqkghplpen qgnsqapcwg
      601 rssssagsev ggqstgsnhk agssdshnsg rrsyrpthpd cqavlqtlls rtdldprvls
      661 ntgwgqtqik qdtvwdieem prpegksdkg tegwessatq tknsggwgdv psqsnqiksg
      721 wgelstptew kdpkntggwn dyknsnssnw gggrteekss sswndssskd qgwggrqpnq
      781 gwssgkngwg eeveqtknsn wesagnkpvs gwgeggqnei gtwgngants aaskggwddc
      841 krnstwnetg rqpnswnkqq qqhhqqqqes sgswgpppqt pnngrppnpn wnsgpqpaap
      901 keeepsgwee pspqsisrkm diddgtsawg dpssynyknv nlwdknsqgg qatreqslpt
      961 pmtsksqasv wskstppapd ngtsawgepn etspgwgevd dtgasttgwg napstapnam
     1021 ksssksmqdg wgesdgpvtg trhssweeee eggvwntags qgsssshnst swgqggkktq
     1081 mkcslkggss dswmnplskq fsnmgllsqt edipgskmdl svgglpdkkf evdkramnlg
     1141 dfndmmrkdr sgfrppnskd mgttdsgpyf ekggnhglfg nstaqsrgmh tpvqplnpsp
     1201 niraqvppqf lspqvsasml kqfpnsglnp glfnmgpqls pqqiamlsql pqipqfqlac
     1261 qlllqqqqqq qllqsqrkls qavrqqqeqq iarmvsalqq qqqrqpgmkh spshpvgpkp
     1321 hldsmvpnpl nvglsdlqtk gqipgygsgf gsssmdygmv ggkeagaesr fkqwtmmegl
     1381 psvasqdanm hkngaivppg karggspynq fdiiqgdplg ghggpagdsw lpakspptnk
     1441 igskssnasw ppefqpgvpw kgiqnidpes dpyvtpgsvl ggtatspivd tdhqllrdnt
     1501 tgsnsslnts lpspgawpys asdnsftnvh stsakfsdyk stwspdpigh npthlsnkmw
     1561 knhissrntt glprpppglt npkpsspwns taprsvrgwg aqdsrlasas twsdggsvrp
     1621 sywlvlhnlt pqidgstlrt icmqhgpllt fhlnltqgta liryntkqea akaqtalhmc
     1681 vlgnttilae fatdeevsrf laqaqpptpt atpsaptagw qsletgqnqt dpvgpalnlf
     1741 ggstglgqws sggsgggsgs dlpgtslwgp psyssslwgv psvedphrmg spapllpgdl
     1801 lgggsdsi
//
LOCUS       XP_053920610            1362 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger MYM-type protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053920610
VERSION     XP_053920610.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064635.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1362
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1362
                     /product="zinc finger MYM-type protein 2 isoform X1"
                     /calculated_mol_wt=153152
     Region          328..364
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          369..410
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          421..457
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          463..503
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          611..648
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          699..735
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          741..776
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          1177..1345
                     /region_name="DUF3504"
                     /note="Domain of unknown function (DUF3504); pfam12012"
                     /db_xref="CDD:463430"
     CDS             1..1362
                     /gene="ZMYM2"
                     /coded_by="XM_054064635.1:191..4279"
                     /db_xref="GeneID:104055328"
ORIGIN      
        1 mdtsplgrle lsehtasllg nttmaaglan vgntfggpps slvsrpnkfq nspieddddv
       61 vfiepvqppq nstslivdqr ntaftsskne elqgneckmp pppkdlnsqk gsisetiiid
      121 deedietnqv qeknassfne rrlpecknrt ndmefsassf srskvnsgig nsgittepds
      181 eiqianvttl etgavssvsd ghlenaegrd mnlmithvts lqnanlgdvs nglqssnfgv
      241 nmqtytqslt sqtktgvgpf npgrmnvagd vfqngesvth hnpdswisqs asfprnqkqp
      301 gvdslspvas lpkqifqpsa qqqpskqvkv tcanckkplq kgqtayqrkg sahlfcsttc
      361 lssfshkpap kklcvmcrkd ittmkgtiva qvdssesfqe fcstsclsfy edkqnpskga
      421 lnksrcticg klteirhevs fknmthklcs dhcfnryrma nglimncceh cgeylpskga
      481 gnniltidgq qkrfccqncv geykqkygkl tsctgcrarc rffdmtqcvg pngcmepycs
      541 aacmnthksk ytnsqsvgii chfckrnslp qyqatmpdgk lynfcssscv akfqtlsvqs
      601 stngqfvsps diqlkcnyck ssfcskpevl ewenkvyqfc sracsddykk lhcivtycey
      661 cqeektlhet vnfsgikrpf csegckllyk qdfarrlglr cvtcnycsql ckkgatkeld
      721 gvvrdfcsee cckkfqdwyy kaarcdccks qgtlkekvqw rgemkhfcdq hcllrfycqq
      781 nepnlatqkg penlhydqgc qpprtkltgs apppsptanr emknkavlck pltmtkatyc
      841 kphmqtkscq teddwrkeyv pvpipvpvyv pvpmnmcsqn vpvptavpvp vpvpvflptg
      901 ldssekilaa ieelkgkips npletellnl sgmlpehdgk aeasdvasvi vesnllnset
      961 sllnsetnll nseteartsl pdvpyepdld ieidfprate eldtenefll ppvfgeeyee
     1021 qprprpkkkg vkrkavseyq shddssense csfpfkyayg vnawkhwiks ryldeelpel
     1081 eelkstksvk lkedllshta aelnyglthf vneirrpnge nyapdsiyyl clgiqeylyg
     1141 snrkdnifid piyhtfeqel nkilrswqps ilpdgsifsr veedylwrik qlgshspval
     1201 lntlfyfntk yfglktveqh lrlsfgtvfr qwkknpltme skaclryqvs slcradsedk
     1261 ittgkrkhed depvfeqien tsdparcpvk mfecylsksp qnlnqrtdmf ylqpecsvsa
     1321 espiwytats ldrntlenml vrvllvkdiy dkdnyelded id
//
LOCUS       XP_053920617            1362 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger MYM-type protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053920617
VERSION     XP_053920617.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064642.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1362
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1362
                     /product="zinc finger MYM-type protein 2 isoform X1"
                     /calculated_mol_wt=153152
     Region          328..364
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          369..410
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          421..457
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          463..503
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          611..648
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          699..735
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          741..776
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          1177..1345
                     /region_name="DUF3504"
                     /note="Domain of unknown function (DUF3504); pfam12012"
                     /db_xref="CDD:463430"
     CDS             1..1362
                     /gene="ZMYM2"
                     /coded_by="XM_054064642.1:188..4276"
                     /db_xref="GeneID:104055328"
ORIGIN      
        1 mdtsplgrle lsehtasllg nttmaaglan vgntfggpps slvsrpnkfq nspieddddv
       61 vfiepvqppq nstslivdqr ntaftsskne elqgneckmp pppkdlnsqk gsisetiiid
      121 deedietnqv qeknassfne rrlpecknrt ndmefsassf srskvnsgig nsgittepds
      181 eiqianvttl etgavssvsd ghlenaegrd mnlmithvts lqnanlgdvs nglqssnfgv
      241 nmqtytqslt sqtktgvgpf npgrmnvagd vfqngesvth hnpdswisqs asfprnqkqp
      301 gvdslspvas lpkqifqpsa qqqpskqvkv tcanckkplq kgqtayqrkg sahlfcsttc
      361 lssfshkpap kklcvmcrkd ittmkgtiva qvdssesfqe fcstsclsfy edkqnpskga
      421 lnksrcticg klteirhevs fknmthklcs dhcfnryrma nglimncceh cgeylpskga
      481 gnniltidgq qkrfccqncv geykqkygkl tsctgcrarc rffdmtqcvg pngcmepycs
      541 aacmnthksk ytnsqsvgii chfckrnslp qyqatmpdgk lynfcssscv akfqtlsvqs
      601 stngqfvsps diqlkcnyck ssfcskpevl ewenkvyqfc sracsddykk lhcivtycey
      661 cqeektlhet vnfsgikrpf csegckllyk qdfarrlglr cvtcnycsql ckkgatkeld
      721 gvvrdfcsee cckkfqdwyy kaarcdccks qgtlkekvqw rgemkhfcdq hcllrfycqq
      781 nepnlatqkg penlhydqgc qpprtkltgs apppsptanr emknkavlck pltmtkatyc
      841 kphmqtkscq teddwrkeyv pvpipvpvyv pvpmnmcsqn vpvptavpvp vpvpvflptg
      901 ldssekilaa ieelkgkips npletellnl sgmlpehdgk aeasdvasvi vesnllnset
      961 sllnsetnll nseteartsl pdvpyepdld ieidfprate eldtenefll ppvfgeeyee
     1021 qprprpkkkg vkrkavseyq shddssense csfpfkyayg vnawkhwiks ryldeelpel
     1081 eelkstksvk lkedllshta aelnyglthf vneirrpnge nyapdsiyyl clgiqeylyg
     1141 snrkdnifid piyhtfeqel nkilrswqps ilpdgsifsr veedylwrik qlgshspval
     1201 lntlfyfntk yfglktveqh lrlsfgtvfr qwkknpltme skaclryqvs slcradsedk
     1261 ittgkrkhed depvfeqien tsdparcpvk mfecylsksp qnlnqrtdmf ylqpecsvsa
     1321 espiwytats ldrntlenml vrvllvkdiy dkdnyelded id
//
LOCUS       XP_053920626            1274 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger MYM-type protein 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053920626
VERSION     XP_053920626.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064651.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1274
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1274
                     /product="zinc finger MYM-type protein 2 isoform X2"
                     /calculated_mol_wt=143999
     Region          240..276
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          281..322
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          333..369
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          375..415
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          523..560
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          611..647
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          653..688
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          1089..1257
                     /region_name="DUF3504"
                     /note="Domain of unknown function (DUF3504); pfam12012"
                     /db_xref="CDD:463430"
     CDS             1..1274
                     /gene="ZMYM2"
                     /coded_by="XM_054064651.1:191..4015"
                     /db_xref="GeneID:104055328"
ORIGIN      
        1 mdtsplgrle lsehtasllg nttmaaglan vgntfggpps slvsrpnkfq nspieddddv
       61 vfiepvqppq nstslivdqr ntaftsskne elqgneckmp pppkdlnsqk gsisetiiid
      121 deedietnqv qeknassfne rrlpecknrt ndmefsassf srsktktgvg pfnpgrmnva
      181 gdvfqngesv thhnpdswis qsasfprnqk qpgvdslspv aslpkqifqp saqqqpskqv
      241 kvtcanckkp lqkgqtayqr kgsahlfcst tclssfshkp apkklcvmcr kdittmkgti
      301 vaqvdssesf qefcstscls fyedkqnpsk galnksrcti cgklteirhe vsfknmthkl
      361 csdhcfnryr manglimncc ehcgeylpsk gagnniltid gqqkrfccqn cvgeykqkyg
      421 kltsctgcra rcrffdmtqc vgpngcmepy csaacmnthk skytnsqsvg iichfckrns
      481 lpqyqatmpd gklynfcsss cvakfqtlsv qsstngqfvs psdiqlkcny ckssfcskpe
      541 vlewenkvyq fcsracsddy kklhcivtyc eycqeektlh etvnfsgikr pfcsegckll
      601 ykqdfarrlg lrcvtcnycs qlckkgatke ldgvvrdfcs eecckkfqdw yykaarcdcc
      661 ksqgtlkekv qwrgemkhfc dqhcllrfyc qqnepnlatq kgpenlhydq gcqpprtklt
      721 gsapppspta nremknkavl ckpltmtkat yckphmqtks cqteddwrke yvpvpipvpv
      781 yvpvpmnmcs qnvpvptavp vpvpvpvflp tgldssekil aaieelkgki psnpletell
      841 nlsgmlpehd gkaeasdvas vivesnllns etsllnsetn llnseteart slpdvpyepd
      901 ldieidfpra teeldtenef llppvfgeey eeqprprpkk kgvkrkavse yqshddssen
      961 secsfpfkya ygvnawkhwi ksryldeelp eleelkstks vklkedllsh taaelnyglt
     1021 hfvneirrpn genyapdsiy ylclgiqeyl ygsnrkdnif idpiyhtfeq elnkilrswq
     1081 psilpdgsif srveedylwr ikqlgshspv allntlfyfn tkyfglktve qhlrlsfgtv
     1141 frqwkknplt meskaclryq vsslcradse dkittgkrkh eddepvfeqi entsdparcp
     1201 vkmfecylsk spqnlnqrtd mfylqpecsv saespiwyta tsldrntlen mlvrvllvkd
     1261 iydkdnyeld edid
//
LOCUS       XP_053920634            1273 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger MYM-type protein 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053920634
VERSION     XP_053920634.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064659.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1273
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1273
                     /product="zinc finger MYM-type protein 2 isoform X3"
                     /calculated_mol_wt=143234
     Region          328..364
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          369..410
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          421..457
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          463..503
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          522..559
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          610..646
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          652..687
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          1088..1256
                     /region_name="DUF3504"
                     /note="Domain of unknown function (DUF3504); pfam12012"
                     /db_xref="CDD:463430"
     CDS             1..1273
                     /gene="ZMYM2"
                     /coded_by="XM_054064659.1:191..4012"
                     /db_xref="GeneID:104055328"
ORIGIN      
        1 mdtsplgrle lsehtasllg nttmaaglan vgntfggpps slvsrpnkfq nspieddddv
       61 vfiepvqppq nstslivdqr ntaftsskne elqgneckmp pppkdlnsqk gsisetiiid
      121 deedietnqv qeknassfne rrlpecknrt ndmefsassf srskvnsgig nsgittepds
      181 eiqianvttl etgavssvsd ghlenaegrd mnlmithvts lqnanlgdvs nglqssnfgv
      241 nmqtytqslt sqtktgvgpf npgrmnvagd vfqngesvth hnpdswisqs asfprnqkqp
      301 gvdslspvas lpkqifqpsa qqqpskqvkv tcanckkplq kgqtayqrkg sahlfcsttc
      361 lssfshkpap kklcvmcrkd ittmkgtiva qvdssesfqe fcstsclsfy edkqnpskga
      421 lnksrcticg klteirhevs fknmthklcs dhcfnryrma nglimncceh cgeylpskga
      481 gnniltidgq qkrfccqncv geykqtlsvq sstngqfvsp sdiqlkcnyc kssfcskpev
      541 lewenkvyqf csracsddyk klhcivtyce ycqeektlhe tvnfsgikrp fcsegcklly
      601 kqdfarrlgl rcvtcnycsq lckkgatkel dgvvrdfcse ecckkfqdwy ykaarcdcck
      661 sqgtlkekvq wrgemkhfcd qhcllrfycq qnepnlatqk gpenlhydqg cqpprtkltg
      721 sapppsptan remknkavlc kpltmtkaty ckphmqtksc qteddwrkey vpvpipvpvy
      781 vpvpmnmcsq nvpvptavpv pvpvpvflpt gldssekila aieelkgkip snpletelln
      841 lsgmlpehdg kaeasdvasv ivesnllnse tsllnsetnl lnsetearts lpdvpyepdl
      901 dieidfprat eeldtenefl lppvfgeeye eqprprpkkk gvkrkavsey qshddssens
      961 ecsfpfkyay gvnawkhwik sryldeelpe leelkstksv klkedllsht aaelnyglth
     1021 fvneirrpng enyapdsiyy lclgiqeyly gsnrkdnifi dpiyhtfeqe lnkilrswqp
     1081 silpdgsifs rveedylwri kqlgshspva llntlfyfnt kyfglktveq hlrlsfgtvf
     1141 rqwkknpltm eskaclryqv sslcradsed kittgkrkhe ddepvfeqie ntsdparcpv
     1201 kmfecylsks pqnlnqrtdm fylqpecsvs aespiwytat sldrntlenm lvrvllvkdi
     1261 ydkdnyelde did
//
LOCUS       XP_053920639            1362 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger MYM-type protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053920639
VERSION     XP_053920639.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064664.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1362
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1362
                     /product="zinc finger MYM-type protein 2 isoform X1"
                     /calculated_mol_wt=153152
     Region          328..364
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          369..410
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          421..457
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          463..503
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          611..648
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          699..735
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          741..776
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          1177..1345
                     /region_name="DUF3504"
                     /note="Domain of unknown function (DUF3504); pfam12012"
                     /db_xref="CDD:463430"
     CDS             1..1362
                     /gene="ZMYM2"
                     /coded_by="XM_054064664.1:227..4315"
                     /db_xref="GeneID:104055328"
ORIGIN      
        1 mdtsplgrle lsehtasllg nttmaaglan vgntfggpps slvsrpnkfq nspieddddv
       61 vfiepvqppq nstslivdqr ntaftsskne elqgneckmp pppkdlnsqk gsisetiiid
      121 deedietnqv qeknassfne rrlpecknrt ndmefsassf srskvnsgig nsgittepds
      181 eiqianvttl etgavssvsd ghlenaegrd mnlmithvts lqnanlgdvs nglqssnfgv
      241 nmqtytqslt sqtktgvgpf npgrmnvagd vfqngesvth hnpdswisqs asfprnqkqp
      301 gvdslspvas lpkqifqpsa qqqpskqvkv tcanckkplq kgqtayqrkg sahlfcsttc
      361 lssfshkpap kklcvmcrkd ittmkgtiva qvdssesfqe fcstsclsfy edkqnpskga
      421 lnksrcticg klteirhevs fknmthklcs dhcfnryrma nglimncceh cgeylpskga
      481 gnniltidgq qkrfccqncv geykqkygkl tsctgcrarc rffdmtqcvg pngcmepycs
      541 aacmnthksk ytnsqsvgii chfckrnslp qyqatmpdgk lynfcssscv akfqtlsvqs
      601 stngqfvsps diqlkcnyck ssfcskpevl ewenkvyqfc sracsddykk lhcivtycey
      661 cqeektlhet vnfsgikrpf csegckllyk qdfarrlglr cvtcnycsql ckkgatkeld
      721 gvvrdfcsee cckkfqdwyy kaarcdccks qgtlkekvqw rgemkhfcdq hcllrfycqq
      781 nepnlatqkg penlhydqgc qpprtkltgs apppsptanr emknkavlck pltmtkatyc
      841 kphmqtkscq teddwrkeyv pvpipvpvyv pvpmnmcsqn vpvptavpvp vpvpvflptg
      901 ldssekilaa ieelkgkips npletellnl sgmlpehdgk aeasdvasvi vesnllnset
      961 sllnsetnll nseteartsl pdvpyepdld ieidfprate eldtenefll ppvfgeeyee
     1021 qprprpkkkg vkrkavseyq shddssense csfpfkyayg vnawkhwiks ryldeelpel
     1081 eelkstksvk lkedllshta aelnyglthf vneirrpnge nyapdsiyyl clgiqeylyg
     1141 snrkdnifid piyhtfeqel nkilrswqps ilpdgsifsr veedylwrik qlgshspval
     1201 lntlfyfntk yfglktveqh lrlsfgtvfr qwkknpltme skaclryqvs slcradsedk
     1261 ittgkrkhed depvfeqien tsdparcpvk mfecylsksp qnlnqrtdmf ylqpecsvsa
     1321 espiwytats ldrntlenml vrvllvkdiy dkdnyelded id
//
LOCUS       XP_053920645            1362 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger MYM-type protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053920645
VERSION     XP_053920645.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064670.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1362
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1362
                     /product="zinc finger MYM-type protein 2 isoform X1"
                     /calculated_mol_wt=153152
     Region          328..364
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          369..410
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          421..457
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          463..503
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          611..648
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          699..735
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          741..776
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          1177..1345
                     /region_name="DUF3504"
                     /note="Domain of unknown function (DUF3504); pfam12012"
                     /db_xref="CDD:463430"
     CDS             1..1362
                     /gene="ZMYM2"
                     /coded_by="XM_054064670.1:224..4312"
                     /db_xref="GeneID:104055328"
ORIGIN      
        1 mdtsplgrle lsehtasllg nttmaaglan vgntfggpps slvsrpnkfq nspieddddv
       61 vfiepvqppq nstslivdqr ntaftsskne elqgneckmp pppkdlnsqk gsisetiiid
      121 deedietnqv qeknassfne rrlpecknrt ndmefsassf srskvnsgig nsgittepds
      181 eiqianvttl etgavssvsd ghlenaegrd mnlmithvts lqnanlgdvs nglqssnfgv
      241 nmqtytqslt sqtktgvgpf npgrmnvagd vfqngesvth hnpdswisqs asfprnqkqp
      301 gvdslspvas lpkqifqpsa qqqpskqvkv tcanckkplq kgqtayqrkg sahlfcsttc
      361 lssfshkpap kklcvmcrkd ittmkgtiva qvdssesfqe fcstsclsfy edkqnpskga
      421 lnksrcticg klteirhevs fknmthklcs dhcfnryrma nglimncceh cgeylpskga
      481 gnniltidgq qkrfccqncv geykqkygkl tsctgcrarc rffdmtqcvg pngcmepycs
      541 aacmnthksk ytnsqsvgii chfckrnslp qyqatmpdgk lynfcssscv akfqtlsvqs
      601 stngqfvsps diqlkcnyck ssfcskpevl ewenkvyqfc sracsddykk lhcivtycey
      661 cqeektlhet vnfsgikrpf csegckllyk qdfarrlglr cvtcnycsql ckkgatkeld
      721 gvvrdfcsee cckkfqdwyy kaarcdccks qgtlkekvqw rgemkhfcdq hcllrfycqq
      781 nepnlatqkg penlhydqgc qpprtkltgs apppsptanr emknkavlck pltmtkatyc
      841 kphmqtkscq teddwrkeyv pvpipvpvyv pvpmnmcsqn vpvptavpvp vpvpvflptg
      901 ldssekilaa ieelkgkips npletellnl sgmlpehdgk aeasdvasvi vesnllnset
      961 sllnsetnll nseteartsl pdvpyepdld ieidfprate eldtenefll ppvfgeeyee
     1021 qprprpkkkg vkrkavseyq shddssense csfpfkyayg vnawkhwiks ryldeelpel
     1081 eelkstksvk lkedllshta aelnyglthf vneirrpnge nyapdsiyyl clgiqeylyg
     1141 snrkdnifid piyhtfeqel nkilrswqps ilpdgsifsr veedylwrik qlgshspval
     1201 lntlfyfntk yfglktveqh lrlsfgtvfr qwkknpltme skaclryqvs slcradsedk
     1261 ittgkrkhed depvfeqien tsdparcpvk mfecylsksp qnlnqrtdmf ylqpecsvsa
     1321 espiwytats ldrntlenml vrvllvkdiy dkdnyelded id
//
LOCUS       XP_053920656             862 aa            linear   VRT 09-MAR-2023
DEFINITION  rho guanine nucleotide exchange factor 7 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053920656
VERSION     XP_053920656.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064681.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..862
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..862
                     /product="rho guanine nucleotide exchange factor 7 isoform
                     X1"
                     /calculated_mol_wt=97111
     Region          3..115
                     /region_name="CH_betaPIX"
                     /note="calponin homology (CH) domain found in beta-Pak
                     Interactive eXchange factor; cd21266"
                     /db_xref="CDD:409115"
     Site            order(3,7,65,67..68,71..72,74,82..90,96,98..99,101..102,
                     105..106,109)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409115"
     Region          117..163
                     /region_name="RhoGEF67_u1"
                     /note="Unstructured region one on RhoGEF 6 and 7;
                     pfam16615"
                     /db_xref="CDD:465201"
     Region          167..220
                     /region_name="SH3_betaPIX"
                     /note="Src Homology 3 domain of beta-Pak Interactive
                     eXchange factor; cd12061"
                     /db_xref="CDD:212994"
     Site            order(172,174,177,180..181,196,198..200,211,213,215..216)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212994"
     Region          251..428
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(257,261,355,379..380,383..384,386..387,390..391,
                     394..395,398,424,428)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          459..557
                     /region_name="PH_Cool_Pix"
                     /note="Cloned out of library/PAK-interactive exchange
                     factor pleckstrin homology (PH) domain; cd01225"
                     /db_xref="CDD:269932"
     Region          617..707
                     /region_name="RhoGEF67_u2"
                     /note="Unstructured region two on RhoGEF 6 and 7;
                     pfam16614"
                     /db_xref="CDD:465200"
     Region          777..861
                     /region_name="betaPIX_CC"
                     /note="betaPIX coiled coil; pfam16523"
                     /db_xref="CDD:465158"
     CDS             1..862
                     /gene="ARHGEF7"
                     /coded_by="XM_054064681.1:76..2664"
                     /db_xref="GeneID:104068400"
ORIGIN      
        1 mnsaeqtvtw lialgvlesp kktisdpegf lqsslkdgvv lcrllerllp gtidkvypep
       61 rtegeclsni reflrgcgas lrletfdand lyqgqnfskv lsslvalnkv tadiglgsds
      121 vcarpsshri ksfdslgsqs lhsrtsklfq gqyrsldmtd nsnhqlvvra kfnfqqtned
      181 elsfskgdii hvtrveeggw wegtlngktg wfpsnyvrei ksnekpvspk sgtlksppkg
      241 fdtsainksy ynvvlqnile teneyakelq tmlsnylrpl qaseklnstn tsylmgnlee
      301 issfqqmlaq sleectklpe aqqrvggcfl nlmpqmksly laycanhpsa vnvltehsee
      361 lgefmevkga nspgilvltt glskpfmrld kyptllkele rhmedyhpdr pdiqksmtaf
      421 knlsaqcqev rkrkelelqi lteaircweg ediktlgnvi ymsqvmiqca gseekneryl
      481 llfpnillml sasprmsgfi yqgklpmtgm titkledsen hknafeisgn mierilvscn
      541 nqqdlhewvd hlqkqtkvtt vgnptikphs vpshtlpshp vtpsskhsds kpipltpayh
      601 tlphpshhgt phttinwgpl eppktpkpws lsclrpappl rpsaalcyke dlskspktmk
      661 kllpkrkper kpsdeefalr kstaaleeda qilkvieayc tsaktrqtln stwqgtdlmh
      721 nhvladddqs sldslgrrss lsrlepsdls edsdydsiwt ahsyrmgsts rsrkesapqv
      781 llpeeekiiv eetksngqtv ieekslvdtv yalkdevqel rqdnkkmkks leeeqrarkd
      841 leklvrkvlk nmndpswdet nl
//
LOCUS       XP_053920666             705 aa            linear   VRT 09-MAR-2023
DEFINITION  rho guanine nucleotide exchange factor 7 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053920666
VERSION     XP_053920666.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064691.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..705
                     /product="rho guanine nucleotide exchange factor 7 isoform
                     X2"
                     /calculated_mol_wt=79905
     Region          10..63
                     /region_name="SH3_betaPIX"
                     /note="Src Homology 3 domain of beta-Pak Interactive
                     eXchange factor; cd12061"
                     /db_xref="CDD:212994"
     Site            order(15,17,20,23..24,39,41..43,54,56,58..59)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212994"
     Region          94..271
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(100,104,198,222..223,226..227,229..230,233..234,
                     237..238,241,267,271)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          302..400
                     /region_name="PH_Cool_Pix"
                     /note="Cloned out of library/PAK-interactive exchange
                     factor pleckstrin homology (PH) domain; cd01225"
                     /db_xref="CDD:269932"
     Region          460..550
                     /region_name="RhoGEF67_u2"
                     /note="Unstructured region two on RhoGEF 6 and 7;
                     pfam16614"
                     /db_xref="CDD:465200"
     Region          620..704
                     /region_name="betaPIX_CC"
                     /note="betaPIX coiled coil; pfam16523"
                     /db_xref="CDD:465158"
     CDS             1..705
                     /gene="ARHGEF7"
                     /coded_by="XM_054064691.1:377..2494"
                     /db_xref="GeneID:104068400"
ORIGIN      
        1 mtdnsnhqlv vrakfnfqqt nedelsfskg diihvtrvee ggwwegtlng ktgwfpsnyv
       61 reiksnekpv spksgtlksp pkgfdtsain ksyynvvlqn ileteneyak elqtmlsnyl
      121 rplqasekln stntsylmgn leeissfqqm laqsleectk lpeaqqrvgg cflnlmpqmk
      181 slylaycanh psavnvlteh seelgefmev kganspgilv lttglskpfm rldkyptllk
      241 elerhmedyh pdrpdiqksm tafknlsaqc qevrkrkele lqilteairc wegediktlg
      301 nviymsqvmi qcagseekne rylllfpnil lmlsasprms gfiyqgklpm tgmtitkled
      361 senhknafei sgnmierilv scnnqqdlhe wvdhlqkqtk vttvgnptik phsvpshtlp
      421 shpvtpsskh sdskpipltp ayhtlphpsh hgtphttinw gpleppktpk pwslsclrpa
      481 pplrpsaalc ykedlskspk tmkkllpkrk perkpsdeef alrkstaale edaqilkvie
      541 ayctsaktrq tlnstwqgtd lmhnhvladd dqssldslgr rsslsrleps dlsedsdyds
      601 iwtahsyrmg stsrsrkesa pqvllpeeek iiveetksng qtvieekslv dtvyalkdev
      661 qelrqdnkkm kksleeeqra rkdleklvrk vlknmndpsw detnl
//
LOCUS       XP_053920672             803 aa            linear   VRT 09-MAR-2023
DEFINITION  rho guanine nucleotide exchange factor 7 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053920672
VERSION     XP_053920672.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064697.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..803
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..803
                     /product="rho guanine nucleotide exchange factor 7 isoform
                     X3"
                     /calculated_mol_wt=90429
     Region          3..115
                     /region_name="CH_betaPIX"
                     /note="calponin homology (CH) domain found in beta-Pak
                     Interactive eXchange factor; cd21266"
                     /db_xref="CDD:409115"
     Site            order(3,7,65,67..68,71..72,74,82..90,96,98..99,101..102,
                     105..106,109)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409115"
     Region          117..163
                     /region_name="RhoGEF67_u1"
                     /note="Unstructured region one on RhoGEF 6 and 7;
                     pfam16615"
                     /db_xref="CDD:465201"
     Region          167..220
                     /region_name="SH3_betaPIX"
                     /note="Src Homology 3 domain of beta-Pak Interactive
                     eXchange factor; cd12061"
                     /db_xref="CDD:212994"
     Site            order(172,174,177,180..181,196,198..200,211,213,215..216)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212994"
     Region          251..428
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(257,261,355,379..380,383..384,386..387,390..391,
                     394..395,398,424,428)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          459..557
                     /region_name="PH_Cool_Pix"
                     /note="Cloned out of library/PAK-interactive exchange
                     factor pleckstrin homology (PH) domain; cd01225"
                     /db_xref="CDD:269932"
     Region          617..707
                     /region_name="RhoGEF67_u2"
                     /note="Unstructured region two on RhoGEF 6 and 7;
                     pfam16614"
                     /db_xref="CDD:465200"
     Region          718..802
                     /region_name="betaPIX_CC"
                     /note="betaPIX coiled coil; pfam16523"
                     /db_xref="CDD:465158"
     CDS             1..803
                     /gene="ARHGEF7"
                     /coded_by="XM_054064697.1:76..2487"
                     /db_xref="GeneID:104068400"
ORIGIN      
        1 mnsaeqtvtw lialgvlesp kktisdpegf lqsslkdgvv lcrllerllp gtidkvypep
       61 rtegeclsni reflrgcgas lrletfdand lyqgqnfskv lsslvalnkv tadiglgsds
      121 vcarpsshri ksfdslgsqs lhsrtsklfq gqyrsldmtd nsnhqlvvra kfnfqqtned
      181 elsfskgdii hvtrveeggw wegtlngktg wfpsnyvrei ksnekpvspk sgtlksppkg
      241 fdtsainksy ynvvlqnile teneyakelq tmlsnylrpl qaseklnstn tsylmgnlee
      301 issfqqmlaq sleectklpe aqqrvggcfl nlmpqmksly laycanhpsa vnvltehsee
      361 lgefmevkga nspgilvltt glskpfmrld kyptllkele rhmedyhpdr pdiqksmtaf
      421 knlsaqcqev rkrkelelqi lteaircweg ediktlgnvi ymsqvmiqca gseekneryl
      481 llfpnillml sasprmsgfi yqgklpmtgm titkledsen hknafeisgn mierilvscn
      541 nqqdlhewvd hlqkqtkvtt vgnptikphs vpshtlpshp vtpsskhsds kpipltpayh
      601 tlphpshhgt phttinwgpl eppktpkpws lsclrpappl rpsaalcyke dlskspktmk
      661 kllpkrkper kpsdeefalr kstaaleeda qilkvieayc tsaktrqtln sssrkesapq
      721 vllpeeekii veetksngqt vieekslvdt vyalkdevqe lrqdnkkmkk sleeeqrark
      781 dleklvrkvl knmndpswde tnl
//
LOCUS       XP_053920683             787 aa            linear   VRT 09-MAR-2023
DEFINITION  rho guanine nucleotide exchange factor 7 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053920683
VERSION     XP_053920683.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064708.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..787
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..787
                     /product="rho guanine nucleotide exchange factor 7 isoform
                     X4"
                     /calculated_mol_wt=88873
     Region          <7..40
                     /region_name="CH_SF"
                     /note="calponin homology (CH) domain superfamily; cl00030"
                     /db_xref="CDD:469584"
     Region          42..88
                     /region_name="RhoGEF67_u1"
                     /note="Unstructured region one on RhoGEF 6 and 7;
                     pfam16615"
                     /db_xref="CDD:465201"
     Region          92..145
                     /region_name="SH3_betaPIX"
                     /note="Src Homology 3 domain of beta-Pak Interactive
                     eXchange factor; cd12061"
                     /db_xref="CDD:212994"
     Site            order(97,99,102,105..106,121,123..125,136,138,140..141)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212994"
     Region          176..353
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(182,186,280,304..305,308..309,311..312,315..316,
                     319..320,323,349,353)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          384..482
                     /region_name="PH_Cool_Pix"
                     /note="Cloned out of library/PAK-interactive exchange
                     factor pleckstrin homology (PH) domain; cd01225"
                     /db_xref="CDD:269932"
     Region          542..632
                     /region_name="RhoGEF67_u2"
                     /note="Unstructured region two on RhoGEF 6 and 7;
                     pfam16614"
                     /db_xref="CDD:465200"
     Region          702..786
                     /region_name="betaPIX_CC"
                     /note="betaPIX coiled coil; pfam16523"
                     /db_xref="CDD:465158"
     CDS             1..787
                     /gene="ARHGEF7"
                     /coded_by="XM_054064708.1:28..2391"
                     /db_xref="GeneID:104068400"
ORIGIN      
        1 malsesrmkt fdandlyqgq nfskvlsslv alnkvtadig lgsdsvcarp sshriksfds
       61 lgsqslhsrt sklfqgqyrs ldmtdnsnhq lvvrakfnfq qtnedelsfs kgdiihvtrv
      121 eeggwwegtl ngktgwfpsn yvreiksnek pvspksgtlk sppkgfdtsa inksyynvvl
      181 qnileteney akelqtmlsn ylrplqasek lnstntsylm gnleeissfq qmlaqsleec
      241 tklpeaqqrv ggcflnlmpq mkslylayca nhpsavnvlt ehseelgefm evkganspgi
      301 lvlttglskp fmrldkyptl lkelerhmed yhpdrpdiqk smtafknlsa qcqevrkrke
      361 lelqilteai rcwegedikt lgnviymsqv miqcagseek nerylllfpn illmlsaspr
      421 msgfiyqgkl pmtgmtitkl edsenhknaf eisgnmieri lvscnnqqdl hewvdhlqkq
      481 tkvttvgnpt ikphsvpsht lpshpvtpss khsdskpipl tpayhtlphp shhgtphtti
      541 nwgpleppkt pkpwslsclr papplrpsaa lcykedlsks pktmkkllpk rkperkpsde
      601 efalrkstaa leedaqilkv ieayctsakt rqtlnstwqg tdlmhnhvla dddqssldsl
      661 grrsslsrle psdlsedsdy dsiwtahsyr mgstsrsrke sapqvllpee ekiiveetks
      721 ngqtvieeks lvdtvyalkd evqelrqdnk kmkksleeeq rarkdleklv rkvlknmndp
      781 swdetnl
//
LOCUS       XP_053920689             783 aa            linear   VRT 09-MAR-2023
DEFINITION  rho guanine nucleotide exchange factor 7 isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053920689
VERSION     XP_053920689.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064714.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..783
                     /product="rho guanine nucleotide exchange factor 7 isoform
                     X5"
                     /calculated_mol_wt=87876
     Region          3..115
                     /region_name="CH_betaPIX"
                     /note="calponin homology (CH) domain found in beta-Pak
                     Interactive eXchange factor; cd21266"
                     /db_xref="CDD:409115"
     Site            order(3,7,65,67..68,71..72,74,82..90,96,98..99,101..102,
                     105..106,109)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409115"
     Region          117..163
                     /region_name="RhoGEF67_u1"
                     /note="Unstructured region one on RhoGEF 6 and 7;
                     pfam16615"
                     /db_xref="CDD:465201"
     Region          167..220
                     /region_name="SH3_betaPIX"
                     /note="Src Homology 3 domain of beta-Pak Interactive
                     eXchange factor; cd12061"
                     /db_xref="CDD:212994"
     Site            order(172,174,177,180..181,196,198..200,211,213,215..216)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212994"
     Region          251..428
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(257,261,355,379..380,383..384,386..387,390..391,
                     394..395,398,424,428)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          459..557
                     /region_name="PH_Cool_Pix"
                     /note="Cloned out of library/PAK-interactive exchange
                     factor pleckstrin homology (PH) domain; cd01225"
                     /db_xref="CDD:269932"
     Region          617..707
                     /region_name="RhoGEF67_u2"
                     /note="Unstructured region two on RhoGEF 6 and 7;
                     pfam16614"
                     /db_xref="CDD:465200"
     CDS             1..783
                     /gene="ARHGEF7"
                     /coded_by="XM_054064714.1:76..2427"
                     /db_xref="GeneID:104068400"
ORIGIN      
        1 mnsaeqtvtw lialgvlesp kktisdpegf lqsslkdgvv lcrllerllp gtidkvypep
       61 rtegeclsni reflrgcgas lrletfdand lyqgqnfskv lsslvalnkv tadiglgsds
      121 vcarpsshri ksfdslgsqs lhsrtsklfq gqyrsldmtd nsnhqlvvra kfnfqqtned
      181 elsfskgdii hvtrveeggw wegtlngktg wfpsnyvrei ksnekpvspk sgtlksppkg
      241 fdtsainksy ynvvlqnile teneyakelq tmlsnylrpl qaseklnstn tsylmgnlee
      301 issfqqmlaq sleectklpe aqqrvggcfl nlmpqmksly laycanhpsa vnvltehsee
      361 lgefmevkga nspgilvltt glskpfmrld kyptllkele rhmedyhpdr pdiqksmtaf
      421 knlsaqcqev rkrkelelqi lteaircweg ediktlgnvi ymsqvmiqca gseekneryl
      481 llfpnillml sasprmsgfi yqgklpmtgm titkledsen hknafeisgn mierilvscn
      541 nqqdlhewvd hlqkqtkvtt vgnptikphs vpshtlpshp vtpsskhsds kpipltpayh
      601 tlphpshhgt phttinwgpl eppktpkpws lsclrpappl rpsaalcyke dlskspktmk
      661 kllpkrkper kpsdeefalr kstaaleeda qilkvieayc tsaktrqtln stwqgtdlmh
      721 nhvladddqs sldslgrrss lsrlepsdls edsdydsiwt ahsyrmgsts rcmirksvia
      781 rrt
//
LOCUS       XP_053920697             724 aa            linear   VRT 09-MAR-2023
DEFINITION  rho guanine nucleotide exchange factor 7 isoform X6 [Cuculus
            canorus].
ACCESSION   XP_053920697
VERSION     XP_053920697.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064722.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..724
                     /product="rho guanine nucleotide exchange factor 7 isoform
                     X6"
                     /calculated_mol_wt=81194
     Region          3..115
                     /region_name="CH_betaPIX"
                     /note="calponin homology (CH) domain found in beta-Pak
                     Interactive eXchange factor; cd21266"
                     /db_xref="CDD:409115"
     Site            order(3,7,65,67..68,71..72,74,82..90,96,98..99,101..102,
                     105..106,109)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409115"
     Region          117..163
                     /region_name="RhoGEF67_u1"
                     /note="Unstructured region one on RhoGEF 6 and 7;
                     pfam16615"
                     /db_xref="CDD:465201"
     Region          167..220
                     /region_name="SH3_betaPIX"
                     /note="Src Homology 3 domain of beta-Pak Interactive
                     eXchange factor; cd12061"
                     /db_xref="CDD:212994"
     Site            order(172,174,177,180..181,196,198..200,211,213,215..216)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212994"
     Region          251..428
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(257,261,355,379..380,383..384,386..387,390..391,
                     394..395,398,424,428)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          459..557
                     /region_name="PH_Cool_Pix"
                     /note="Cloned out of library/PAK-interactive exchange
                     factor pleckstrin homology (PH) domain; cd01225"
                     /db_xref="CDD:269932"
     Region          617..707
                     /region_name="RhoGEF67_u2"
                     /note="Unstructured region two on RhoGEF 6 and 7;
                     pfam16614"
                     /db_xref="CDD:465200"
     CDS             1..724
                     /gene="ARHGEF7"
                     /coded_by="XM_054064722.1:76..2250"
                     /db_xref="GeneID:104068400"
ORIGIN      
        1 mnsaeqtvtw lialgvlesp kktisdpegf lqsslkdgvv lcrllerllp gtidkvypep
       61 rtegeclsni reflrgcgas lrletfdand lyqgqnfskv lsslvalnkv tadiglgsds
      121 vcarpsshri ksfdslgsqs lhsrtsklfq gqyrsldmtd nsnhqlvvra kfnfqqtned
      181 elsfskgdii hvtrveeggw wegtlngktg wfpsnyvrei ksnekpvspk sgtlksppkg
      241 fdtsainksy ynvvlqnile teneyakelq tmlsnylrpl qaseklnstn tsylmgnlee
      301 issfqqmlaq sleectklpe aqqrvggcfl nlmpqmksly laycanhpsa vnvltehsee
      361 lgefmevkga nspgilvltt glskpfmrld kyptllkele rhmedyhpdr pdiqksmtaf
      421 knlsaqcqev rkrkelelqi lteaircweg ediktlgnvi ymsqvmiqca gseekneryl
      481 llfpnillml sasprmsgfi yqgklpmtgm titkledsen hknafeisgn mierilvscn
      541 nqqdlhewvd hlqkqtkvtt vgnptikphs vpshtlpshp vtpsskhsds kpipltpayh
      601 tlphpshhgt phttinwgpl eppktpkpws lsclrpappl rpsaalcyke dlskspktmk
      661 kllpkrkper kpsdeefalr kstaaleeda qilkvieayc tsaktrqtln sscmirksvi
      721 arrt
//
LOCUS       XP_053920704             705 aa            linear   VRT 09-MAR-2023
DEFINITION  rho guanine nucleotide exchange factor 7 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053920704
VERSION     XP_053920704.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064729.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..705
                     /product="rho guanine nucleotide exchange factor 7 isoform
                     X2"
                     /calculated_mol_wt=79905
     Region          10..63
                     /region_name="SH3_betaPIX"
                     /note="Src Homology 3 domain of beta-Pak Interactive
                     eXchange factor; cd12061"
                     /db_xref="CDD:212994"
     Site            order(15,17,20,23..24,39,41..43,54,56,58..59)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212994"
     Region          94..271
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(100,104,198,222..223,226..227,229..230,233..234,
                     237..238,241,267,271)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          302..400
                     /region_name="PH_Cool_Pix"
                     /note="Cloned out of library/PAK-interactive exchange
                     factor pleckstrin homology (PH) domain; cd01225"
                     /db_xref="CDD:269932"
     Region          460..550
                     /region_name="RhoGEF67_u2"
                     /note="Unstructured region two on RhoGEF 6 and 7;
                     pfam16614"
                     /db_xref="CDD:465200"
     Region          620..704
                     /region_name="betaPIX_CC"
                     /note="betaPIX coiled coil; pfam16523"
                     /db_xref="CDD:465158"
     CDS             1..705
                     /gene="ARHGEF7"
                     /coded_by="XM_054064729.1:373..2490"
                     /db_xref="GeneID:104068400"
ORIGIN      
        1 mtdnsnhqlv vrakfnfqqt nedelsfskg diihvtrvee ggwwegtlng ktgwfpsnyv
       61 reiksnekpv spksgtlksp pkgfdtsain ksyynvvlqn ileteneyak elqtmlsnyl
      121 rplqasekln stntsylmgn leeissfqqm laqsleectk lpeaqqrvgg cflnlmpqmk
      181 slylaycanh psavnvlteh seelgefmev kganspgilv lttglskpfm rldkyptllk
      241 elerhmedyh pdrpdiqksm tafknlsaqc qevrkrkele lqilteairc wegediktlg
      301 nviymsqvmi qcagseekne rylllfpnil lmlsasprms gfiyqgklpm tgmtitkled
      361 senhknafei sgnmierilv scnnqqdlhe wvdhlqkqtk vttvgnptik phsvpshtlp
      421 shpvtpsskh sdskpipltp ayhtlphpsh hgtphttinw gpleppktpk pwslsclrpa
      481 pplrpsaalc ykedlskspk tmkkllpkrk perkpsdeef alrkstaale edaqilkvie
      541 ayctsaktrq tlnstwqgtd lmhnhvladd dqssldslgr rsslsrleps dlsedsdyds
      601 iwtahsyrmg stsrsrkesa pqvllpeeek iiveetksng qtvieekslv dtvyalkdev
      661 qelrqdnkkm kksleeeqra rkdleklvrk vlknmndpsw detnl
//
LOCUS       XP_053920717            3984 aa            linear   VRT 09-MAR-2023
DEFINITION  protein SON isoform X1 [Cuculus canorus].
ACCESSION   XP_053920717
VERSION     XP_053920717.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064742.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3984
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3984
                     /product="protein SON isoform X1"
                     /calculated_mol_wt=439025
     Region          <2928..3263
                     /region_name="DMP1"
                     /note="Dentin matrix protein 1 (DMP1); pfam07263"
                     /db_xref="CDD:462128"
     Region          3831..3875
                     /region_name="G-patch"
                     /note="G-patch domain; pfam01585"
                     /db_xref="CDD:396249"
     Region          3894..3968
                     /region_name="DSRM_SON-like"
                     /note="double-stranded RNA binding motif of protein SON
                     and similar proteins; cd19870"
                     /db_xref="CDD:380699"
     Site            order(3896,3898..3899,3902..3903,3906..3907,3912..3913,
                     3923..3927,3929,3947..3950,3953..3954)
                     /site_type="other"
                     /note="putative RNA binding site [nucleotide binding]"
                     /db_xref="CDD:380699"
     CDS             1..3984
                     /gene="SON"
                     /coded_by="XM_054064742.1:16..11970"
                     /db_xref="GeneID:104064754"
ORIGIN      
        1 maaqppapag laragtrgpa plptmaqpep pasgkvegqp ngdtipaeqa npsddtvaga
       61 gsrqndqivq kieevlsgal dtelqcksdv dkkpaksssk sakrsstged eiprkkskkn
      121 kkhkskkkkk kkkkrkkekk hkkqpkeakl strhgehael qpashlmpek sssqlseqhg
      181 gsgdanlavh mqseqvclka seeldrqalg lvshsgtdsq qslenlgsek gtlcqinppf
      241 nlqggqsdiq entsitqtnv ctreeqikqs heniyptain aseigvrvdt gndtlssips
      301 avvsrseiqk assstlasev iealegsevi lkskgtgkvk aldtalesda mevlnysevs
      361 lqsvaqwgak elgatsesvs lasnvtaiak sanqaemntv kvahlsvame egkipeaeks
      421 lhmgnvknve rslelgdmsr tlepvlkpsl isdnlgvmqc spmdssgvsp qhafkisavt
      481 avnqaeiksa kvplglgavt kvkdieqqmq nvkaleealq pvavvepktl etivepvgvt
      541 akdvkaaqec lqtdvvkdme sttdpatvln asgmflrpkv ltetksmert qesalpaela
      601 drkvvvears ltaivepava aqtcvpqttp eiqvtecfkg pqatvevaal agiksretsq
      661 atlqlentsa skisesilqp isvpeakgse amwflrqekl resgsetean vrgleatpls
      721 lqkdvargla atldstavsk gsevnahlla mkvgslrpvk sletttrrvs eteikdsead
      781 ragtemkmcs shlymkgvgd lghpasvgla ktqgleavlq pgtlsvgrgl aenvsseakm
      841 dgkvieasqg lnaleerter tpesvvtcvs mepvkeseal agmmhlktta grepkhteta
      901 aeplgasrtv csiisqsqvm thtrtsqtgm igemkdseqa trsgtvevrg ldnlseveai
      961 aevktlqlkq mknlemvvgs etrtlmqglg gtlapevvte mrhsevaped snkaearsge
     1021 avepvqtvms qtletsskpe avleslsrae ektvaseilt earkgtlesd leseistdvt
     1081 tqgpaveyit etrrtstktd epllinlkgl eetsetekam eteylepsse agevrwlqsm
     1141 kesatvkkds etteepevhm dirgletsqt sgnvamdvld dasgavqeyl htekqehleg
     1201 kpaaesrrae sapeilsave mksseavpkp gdmkdlettl ehevaaevqy aegmqgqqme
     1261 dvrvqaeece mmldkgdgeq teafepliee tvlssshaag kkdsagtyes eidtkqleaa
     1321 pagmagakdl eagalpetvv elqhaeaavr leaetkdlea aavpetvtea aaataeesqs
     1381 egvlqaeavk eatpeqesrr rdsetsdvqp dvaarmketl mrlekvieks shrssdkkhd
     1441 akkqkrsrsk sqsrsrkrkk ksrsrstsrr ltskrarsrs rndsvsrkkh sksrsrsvek
     1501 rerrvssrrs rrrrsrssdr yrsksrspek rlssgrsrhr rsrssdryrs ksgsvekrqs
     1561 srrsrrrrsr ssdryrsksr smekrqssrr sgrrrsrssd ryrsksrsve krqssrrsgr
     1621 rrsrssdryr sksrsvekrq ssrrsgrrrs rssdryrsks rsvekrlssr rsgrrrsrss
     1681 dryrskslsv ekresrlssr rsrrrrsrss drsksrsrss ekrggkeysw rfrnrsgssd
     1741 rsksrsrsve krsrkaslrr skrqrskssd gyksrsrsve krerkqssrk skrkrskssd
     1801 ryksrsksve kkkessrksk rrrskssdry ksrsrsaekk hkesskkskr krskssdsvk
     1861 srskstekrg sklsslksss kcvessgpqe stkslekvdv peasegsssk ssngpmsval
     1921 saegingpal pptfgsldrs sssvenaael qpsampelgs setqdsqelr smpveamvse
     1981 lsvtsengsa eksmalespl peltystcrs rsssvektgd pgtssvtefq lstscedesi
     2041 slekiegpel lltlesgcsv ssgdyktiss ssgktevqgs slmsdghels hisiektpik
     2101 flqvpesgss tladspesrs lspetveaqk sflapevtss afpdvcesas lpieksqmqe
     2161 pspasdngcf kspdghesgs gsaarieklp lmseggsyks pdgnqhrsss venvkvadis
     2221 lasecgpven lrglisasys ekmqevvltt veqsckssev hgsglsvdrv vdgpalsqvv
     2281 dssessemre lrylpsgrme gtgsfliksg ipvchdghks khnyiekteg velslapelr
     2341 csafpegcel tstglekmev qkpslpledg fstsadcelg stateklqaq vtsltseggl
     2401 fllpdshemr pipaekvevq ksrelkyias pdghelrsay deeiqvqepp vilesrcfvs
     2461 sdghaltptr veveepsqis endytvgldg pelapaekte mrelhqmsee rysvsvesqe
     2521 lqshlvekad vqepaltpen eyavswenqe lrtsspekte mhkasvalfs edhklpssls
     2581 ektevqecsv lseneyavsp eghelavspa ardgqepilt sdgeytvfpe gqgllaentv
     2641 vqepslvphs qyaaspegqe llyghtekae vqecslpsen eyevspeshd lksslvekee
     2701 meepsetses essvsadsqe qqssvvrrad vqelslsege camspegqel qsspaenvea
     2761 kepsltsene halspegyes rfthaektqg vdsslisesd hhlsfesqev kfttvekadv
     2821 qersptpene hggfrndqel gyttagnegc lepltsndra smspdgsdlk smpvenmdda
     2881 vpsllpesgf smspggysvk sglceetgdl epssiaerrh svssyqedhe lqspveeegl
     2941 essltpehrr svspeghdqk stvdeelddr epsltsehrq slspddresr ssigeeaeyl
     3001 eqpltterrs svssdehesr sttgeeveda epsltaerrd stssddresr sttgedvedg
     3061 easltaerrh stssddhesr sttgeegedm epsltaedrr svspdgqesr stlgeeaedq
     3121 elaladerth stssdehesr stagedvedm epsltaegrd stssdehesr stageegedv
     3181 epslttehrr sispdgresr sttgeevddv epsltaerrd stsseehesr sttgeegeda
     3241 easladedkq dsmpldrsee qdssfipesr rsessereks vdkmsdkess qrstsrhsks
     3301 psppksrsts vekvadessr rsrhrrsrst arqksrstsa ektvdkessr rsrrrrsrst
     3361 arqrsqstsv ekaadkessr rsrrrrsrst arqrsrsksv ektadkessr rsrsrrsrss
     3421 qrrsqrydte srsrrnrsrs gtrrrasrsk snrrsrsssl srsrhrrrsr srsasrrrrs
     3481 lsrdrrkrsq rnrsrstdrr rrrsdsrdrr islrlrsrsr tpvrqrrsrs rgrrrsssrs
     3541 pirlrrsrss grrrysrspd rrrsrsserf ssrspkrltd ldkaqlleia kanaaamcak
     3601 sgvplppslm pllsqkkddk anqkssrdtl keltekckki aqstddvivn kphvsdeeee
     3661 erpfynhpfk lsepkpiffn lstpsikpap ppqpknqvsl skefpvssgs qhrkkeadsv
     3721 ygewvpvekg keeskddvfp kpsiegvdit aamndrataq krlsensfdl eamcmlnraq
     3781 eqidawaqsn sipgqftgst gaqilssdel tnsgpqawir kdqflraapv tggmgaqlmr
     3841 kmgwregegl gknkegsvep imvdfktdrk glvavgekaq krsghyvvmk dlsgkhpvsa
     3901 lmeicnkrrw tppefvlvdd sgpdhrkhfi fkvrvngney rptfaslnkk hakataataa
     3961 lqamglvpke smvnttmfrs ashr
//
LOCUS       XP_053920727            3982 aa            linear   VRT 09-MAR-2023
DEFINITION  protein SON isoform X2 [Cuculus canorus].
ACCESSION   XP_053920727
VERSION     XP_053920727.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064752.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3982
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3982
                     /product="protein SON isoform X2"
                     /calculated_mol_wt=439495
     Region          <2926..3261
                     /region_name="DMP1"
                     /note="Dentin matrix protein 1 (DMP1); pfam07263"
                     /db_xref="CDD:462128"
     Region          3829..3873
                     /region_name="G-patch"
                     /note="G-patch domain; pfam01585"
                     /db_xref="CDD:396249"
     Region          3892..3966
                     /region_name="DSRM_SON-like"
                     /note="double-stranded RNA binding motif of protein SON
                     and similar proteins; cd19870"
                     /db_xref="CDD:380699"
     Site            order(3894,3896..3897,3900..3901,3904..3905,3910..3911,
                     3921..3925,3927,3945..3948,3951..3952)
                     /site_type="other"
                     /note="putative RNA binding site [nucleotide binding]"
                     /db_xref="CDD:380699"
     CDS             1..3982
                     /gene="SON"
                     /coded_by="XM_054064752.1:77..12025"
                     /db_xref="GeneID:104064754"
ORIGIN      
        1 maanieqifr sfvvskmrei qeeqeqqqhg ggkvegqpng dtipaeqanp sddtvagags
       61 rqndqivqki eevlsgaldt elqcksdvdk kpaksssksa krsstgedei prkkskknkk
      121 hkskkkkkkk kkrkkekkhk kqpkeaklst rhgehaelqp ashlmpekss sqlseqhggs
      181 gdanlavhmq seqvclkase eldrqalglv shsgtdsqqs lenlgsekgt lcqinppfnl
      241 qggqsdiqen tsitqtnvct reeqikqshe niyptainas eigvrvdtgn dtlssipsav
      301 vsrseiqkas sstlasevie alegsevilk skgtgkvkal dtalesdame vlnysevslq
      361 svaqwgakel gatsesvsla snvtaiaksa nqaemntvkv ahlsvameeg kipeaekslh
      421 mgnvknvers lelgdmsrtl epvlkpslis dnlgvmqcsp mdssgvspqh afkisavtav
      481 nqaeiksakv plglgavtkv kdieqqmqnv kaleealqpv avvepktlet ivepvgvtak
      541 dvkaaqeclq tdvvkdmest tdpatvlnas gmflrpkvlt etksmertqe salpaeladr
      601 kvvvearslt aivepavaaq tcvpqttpei qvtecfkgpq atvevaalag iksretsqat
      661 lqlentsask isesilqpis vpeakgseam wflrqeklre sgseteanvr gleatplslq
      721 kdvarglaat ldstavskgs evnahllamk vgslrpvksl etttrrvset eikdseadra
      781 gtemkmcssh lymkgvgdlg hpasvglakt qgleavlqpg tlsvgrglae nvsseakmdg
      841 kvieasqgln aleertertp esvvtcvsme pvkesealag mmhlkttagr epkhtetaae
      901 plgasrtvcs iisqsqvmth trtsqtgmig emkdseqatr sgtvevrgld nlseveaiae
      961 vktlqlkqmk nlemvvgset rtlmqglggt lapevvtemr hsevapedsn kaearsgeav
     1021 epvqtvmsqt letsskpeav leslsraeek tvaseiltea rkgtlesdle seistdvttq
     1081 gpaveyitet rrtstktdep llinlkglee tsetekamet eylepsseag evrwlqsmke
     1141 satvkkdset teepevhmdi rgletsqtsg nvamdvldda sgavqeylht ekqehlegkp
     1201 aaesrraesa peilsavemk sseavpkpgd mkdlettleh evaaevqyae gmqgqqmedv
     1261 rvqaeecemm ldkgdgeqte afeplieetv lssshaagkk dsagtyesei dtkqleaapa
     1321 gmagakdlea galpetvvel qhaeaavrle aetkdleaaa vpetvteaaa ataeesqseg
     1381 vlqaeavkea tpeqesrrrd setsdvqpdv aarmketlmr lekviekssh rssdkkhdak
     1441 kqkrsrsksq srsrkrkkks rsrstsrrlt skrarsrsrn dsvsrkkhsk srsrsvekre
     1501 rrvssrrsrr rrsrssdryr sksrspekrl ssgrsrhrrs rssdryrsks gsvekrqssr
     1561 rsrrrrsrss dryrsksrsm ekrqssrrsg rrrsrssdry rsksrsvekr qssrrsgrrr
     1621 srssdryrsk srsvekrqss rrsgrrrsrs sdryrsksrs vekrlssrrs grrrsrssdr
     1681 yrskslsvek resrlssrrs rrrrsrssdr sksrsrssek rggkeyswrf rnrsgssdrs
     1741 ksrsrsvekr srkaslrrsk rqrskssdgy ksrsrsvekr erkqssrksk rkrskssdry
     1801 ksrsksvekk kessrkskrr rskssdryks rsrsaekkhk esskkskrkr skssdsvksr
     1861 skstekrgsk lsslkssskc vessgpqest kslekvdvpe asegssskss ngpmsvalsa
     1921 egingpalpp tfgsldrsss svenaaelqp sampelgsse tqdsqelrsm pveamvsels
     1981 vtsengsaek smalesplpe ltystcrsrs ssvektgdpg tssvtefqls tscedesisl
     2041 ekiegpelll tlesgcsvss gdyktissss gktevqgssl msdghelshi siektpikfl
     2101 qvpesgsstl adspesrsls petveaqksf lapevtssaf pdvcesaslp ieksqmqeps
     2161 pasdngcfks pdghesgsgs aarieklplm seggsykspd gnqhrsssve nvkvadisla
     2221 secgpvenlr glisasysek mqevvlttve qsckssevhg sglsvdrvvd gpalsqvvds
     2281 sessemrelr ylpsgrmegt gsfliksgip vchdghkskh nyiektegve lslapelrcs
     2341 afpegcelts tglekmevqk pslpledgfs tsadcelgst ateklqaqvt sltsegglfl
     2401 lpdshemrpi paekvevqks relkyiaspd ghelrsayde eiqvqeppvi lesrcfvssd
     2461 ghaltptrve veepsqisen dytvgldgpe lapaektemr elhqmseery svsvesqelq
     2521 shlvekadvq epaltpeney avswenqelr tsspektemh kasvalfsed hklpsslsek
     2581 tevqecsvls eneyavspeg helavspaar dgqepiltsd geytvfpegq gllaentvvq
     2641 epslvphsqy aaspegqell yghtekaevq ecslpseney evspeshdlk sslvekeeme
     2701 epsetseses svsadsqeqq ssvvrradvq elslsegeca mspegqelqs spaenveake
     2761 psltseneha lspegyesrf thaektqgvd sslisesdhh lsfesqevkf ttvekadvqe
     2821 rsptpenehg gfrndqelgy ttagnegcle pltsndrasm spdgsdlksm pvenmddavp
     2881 sllpesgfsm spggysvksg lceetgdlep ssiaerrhsv ssyqedhelq spveeegles
     2941 sltpehrrsv speghdqkst vdeelddrep sltsehrqsl spddresrss igeeaeyleq
     3001 pltterrssv ssdehesrst tgeevedaep sltaerrdst ssddresrst tgedvedgea
     3061 sltaerrhst ssddhesrst tgeegedmep sltaedrrsv spdgqesrst lgeeaedqel
     3121 aladerthst ssdehesrst agedvedmep sltaegrdst ssdehesrst ageegedvep
     3181 slttehrrsi spdgresrst tgeevddvep sltaerrdst sseehesrst tgeegedaea
     3241 sladedkqds mpldrseeqd ssfipesrrs essereksvd kmsdkessqr stsrhsksps
     3301 ppksrstsve kvadessrrs rhrrsrstar qksrstsaek tvdkessrrs rrrrsrstar
     3361 qrsqstsvek aadkessrrs rrrrsrstar qrsrsksvek tadkessrrs rsrrsrssqr
     3421 rsqrydtesr srrnrsrsgt rrrasrsksn rrsrssslsr srhrrrsrsr sasrrrrsls
     3481 rdrrkrsqrn rsrstdrrrr rsdsrdrris lrlrsrsrtp vrqrrsrsrg rrrsssrspi
     3541 rlrrsrssgr rrysrspdrr rsrsserfss rspkrltdld kaqlleiaka naaamcaksg
     3601 vplppslmpl lsqkkddkan qkssrdtlke ltekckkiaq stddvivnkp hvsdeeeeer
     3661 pfynhpfkls epkpiffnls tpsikpappp qpknqvslsk efpvssgsqh rkkeadsvyg
     3721 ewvpvekgke eskddvfpkp siegvditaa mndrataqkr lsensfdlea mcmlnraqeq
     3781 idawaqsnsi pgqftgstga qilssdeltn sgpqawirkd qflraapvtg gmgaqlmrkm
     3841 gwregeglgk nkegsvepim vdfktdrkgl vavgekaqkr sghyvvmkdl sgkhpvsalm
     3901 eicnkrrwtp pefvlvddsg pdhrkhfifk vrvngneyrp tfaslnkkha kataataalq
     3961 amglvpkesm vnttmfrsas hr
//
LOCUS       XP_053920738            3851 aa            linear   VRT 09-MAR-2023
DEFINITION  protein SON isoform X3 [Cuculus canorus].
ACCESSION   XP_053920738
VERSION     XP_053920738.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064763.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3851
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3851
                     /product="protein SON isoform X3"
                     /calculated_mol_wt=424227
     Region          <2928..3263
                     /region_name="DMP1"
                     /note="Dentin matrix protein 1 (DMP1); pfam07263"
                     /db_xref="CDD:462128"
     CDS             1..3851
                     /gene="SON"
                     /coded_by="XM_054064763.1:16..11571"
                     /db_xref="GeneID:104064754"
ORIGIN      
        1 maaqppapag laragtrgpa plptmaqpep pasgkvegqp ngdtipaeqa npsddtvaga
       61 gsrqndqivq kieevlsgal dtelqcksdv dkkpaksssk sakrsstged eiprkkskkn
      121 kkhkskkkkk kkkkrkkekk hkkqpkeakl strhgehael qpashlmpek sssqlseqhg
      181 gsgdanlavh mqseqvclka seeldrqalg lvshsgtdsq qslenlgsek gtlcqinppf
      241 nlqggqsdiq entsitqtnv ctreeqikqs heniyptain aseigvrvdt gndtlssips
      301 avvsrseiqk assstlasev iealegsevi lkskgtgkvk aldtalesda mevlnysevs
      361 lqsvaqwgak elgatsesvs lasnvtaiak sanqaemntv kvahlsvame egkipeaeks
      421 lhmgnvknve rslelgdmsr tlepvlkpsl isdnlgvmqc spmdssgvsp qhafkisavt
      481 avnqaeiksa kvplglgavt kvkdieqqmq nvkaleealq pvavvepktl etivepvgvt
      541 akdvkaaqec lqtdvvkdme sttdpatvln asgmflrpkv ltetksmert qesalpaela
      601 drkvvvears ltaivepava aqtcvpqttp eiqvtecfkg pqatvevaal agiksretsq
      661 atlqlentsa skisesilqp isvpeakgse amwflrqekl resgsetean vrgleatpls
      721 lqkdvargla atldstavsk gsevnahlla mkvgslrpvk sletttrrvs eteikdsead
      781 ragtemkmcs shlymkgvgd lghpasvgla ktqgleavlq pgtlsvgrgl aenvsseakm
      841 dgkvieasqg lnaleerter tpesvvtcvs mepvkeseal agmmhlktta grepkhteta
      901 aeplgasrtv csiisqsqvm thtrtsqtgm igemkdseqa trsgtvevrg ldnlseveai
      961 aevktlqlkq mknlemvvgs etrtlmqglg gtlapevvte mrhsevaped snkaearsge
     1021 avepvqtvms qtletsskpe avleslsrae ektvaseilt earkgtlesd leseistdvt
     1081 tqgpaveyit etrrtstktd epllinlkgl eetsetekam eteylepsse agevrwlqsm
     1141 kesatvkkds etteepevhm dirgletsqt sgnvamdvld dasgavqeyl htekqehleg
     1201 kpaaesrrae sapeilsave mksseavpkp gdmkdlettl ehevaaevqy aegmqgqqme
     1261 dvrvqaeece mmldkgdgeq teafepliee tvlssshaag kkdsagtyes eidtkqleaa
     1321 pagmagakdl eagalpetvv elqhaeaavr leaetkdlea aavpetvtea aaataeesqs
     1381 egvlqaeavk eatpeqesrr rdsetsdvqp dvaarmketl mrlekvieks shrssdkkhd
     1441 akkqkrsrsk sqsrsrkrkk ksrsrstsrr ltskrarsrs rndsvsrkkh sksrsrsvek
     1501 rerrvssrrs rrrrsrssdr yrsksrspek rlssgrsrhr rsrssdryrs ksgsvekrqs
     1561 srrsrrrrsr ssdryrsksr smekrqssrr sgrrrsrssd ryrsksrsve krqssrrsgr
     1621 rrsrssdryr sksrsvekrq ssrrsgrrrs rssdryrsks rsvekrlssr rsgrrrsrss
     1681 dryrskslsv ekresrlssr rsrrrrsrss drsksrsrss ekrggkeysw rfrnrsgssd
     1741 rsksrsrsve krsrkaslrr skrqrskssd gyksrsrsve krerkqssrk skrkrskssd
     1801 ryksrsksve kkkessrksk rrrskssdry ksrsrsaekk hkesskkskr krskssdsvk
     1861 srskstekrg sklsslksss kcvessgpqe stkslekvdv peasegsssk ssngpmsval
     1921 saegingpal pptfgsldrs sssvenaael qpsampelgs setqdsqelr smpveamvse
     1981 lsvtsengsa eksmalespl peltystcrs rsssvektgd pgtssvtefq lstscedesi
     2041 slekiegpel lltlesgcsv ssgdyktiss ssgktevqgs slmsdghels hisiektpik
     2101 flqvpesgss tladspesrs lspetveaqk sflapevtss afpdvcesas lpieksqmqe
     2161 pspasdngcf kspdghesgs gsaarieklp lmseggsyks pdgnqhrsss venvkvadis
     2221 lasecgpven lrglisasys ekmqevvltt veqsckssev hgsglsvdrv vdgpalsqvv
     2281 dssessemre lrylpsgrme gtgsfliksg ipvchdghks khnyiekteg velslapelr
     2341 csafpegcel tstglekmev qkpslpledg fstsadcelg stateklqaq vtsltseggl
     2401 fllpdshemr pipaekvevq ksrelkyias pdghelrsay deeiqvqepp vilesrcfvs
     2461 sdghaltptr veveepsqis endytvgldg pelapaekte mrelhqmsee rysvsvesqe
     2521 lqshlvekad vqepaltpen eyavswenqe lrtsspekte mhkasvalfs edhklpssls
     2581 ektevqecsv lseneyavsp eghelavspa ardgqepilt sdgeytvfpe gqgllaentv
     2641 vqepslvphs qyaaspegqe llyghtekae vqecslpsen eyevspeshd lksslvekee
     2701 meepsetses essvsadsqe qqssvvrrad vqelslsege camspegqel qsspaenvea
     2761 kepsltsene halspegyes rfthaektqg vdsslisesd hhlsfesqev kfttvekadv
     2821 qersptpene hggfrndqel gyttagnegc lepltsndra smspdgsdlk smpvenmdda
     2881 vpsllpesgf smspggysvk sglceetgdl epssiaerrh svssyqedhe lqspveeegl
     2941 essltpehrr svspeghdqk stvdeelddr epsltsehrq slspddresr ssigeeaeyl
     3001 eqpltterrs svssdehesr sttgeeveda epsltaerrd stssddresr sttgedvedg
     3061 easltaerrh stssddhesr sttgeegedm epsltaedrr svspdgqesr stlgeeaedq
     3121 elaladerth stssdehesr stagedvedm epsltaegrd stssdehesr stageegedv
     3181 epslttehrr sispdgresr sttgeevddv epsltaerrd stsseehesr sttgeegeda
     3241 easladedkq dsmpldrsee qdssfipesr rsessereks vdkmsdkess qrstsrhsks
     3301 psppksrsts vekvadessr rsrhrrsrst arqksrstsa ektvdkessr rsrrrrsrst
     3361 arqrsqstsv ekaadkessr rsrrrrsrst arqrsrsksv ektadkessr rsrsrrsrss
     3421 qrrsqrydte srsrrnrsrs gtrrrasrsk snrrsrsssl srsrhrrrsr srsasrrrrs
     3481 lsrdrrkrsq rnrsrstdrr rrrsdsrdrr islrlrsrsr tpvrqrrsrs rgrrrsssrs
     3541 pirlrrsrss grrrysrspd rrrsrsserf ssrspkrltd ldkaqlleia kanaaamcak
     3601 sgvplppslm pllsqkkddk anqkssrdtl keltekckki aqstddvivn kphvsdeeee
     3661 erpfynhpfk lsepkpiffn lstpsikpap ppqpknqvsl skefpvssgs qhrkkeadsv
     3721 ygewvpvekg keeskddvfp kpsiegvdit aamndrataq krlsensfdl eamcmlnraq
     3781 eqidawaqsn sipgqftgst gaqilssdel tnsgpqawir kgqilvaafl prsmpallft
     3841 tlrpsrpris s
//
LOCUS       XP_053920750             537 aa            linear   VRT 09-MAR-2023
DEFINITION  protein downstream neighbor of Son isoform X1 [Cuculus canorus].
ACCESSION   XP_053920750
VERSION     XP_053920750.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064775.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..537
                     /product="protein downstream neighbor of Son isoform X1"
                     /calculated_mol_wt=59618
     CDS             1..537
                     /gene="DONSON"
                     /coded_by="XM_054064775.1:818..2431"
                     /db_xref="GeneID:104064787"
ORIGIN      
        1 maapalpgys pgfkkppall rlkrkrlrsa etplaapgpa aprrrpaapr npfccgepar
       61 pqllesvced klttkaepfe rtdilplidd fhlplavpev pssprhefpa dwsiktrllf
      121 mssqpftwae hlkaqeeaqg ftqhcratet nlpqsvqepk lstelrcafq qslvywlhps
      181 lpwlqlfpri gadrklagka spwsqdealq qvlmsdwsvs ftslynllka klcpyfyvct
      241 yqftvlfraa glagsdvlta vispttrglr eamrnegief slplleesrt rkqknsemnl
      301 emeaadglev gnttedgqep apsdddddde sfswleemgv qdkvkkpdai siklrkekhe
      361 vqmdhkpesl alvkgtntft llnflincks lvavagaqag lpptllspva frggtmqtlk
      421 arsinakarv hlayedifsl eiigpvmphs lhaltmllrs aqrgafsavl ytheptavfn
      481 tdlhcassaf nqetickdlp acglhtktld qlsqcptlgk ssirflemkd yaytwks
//
LOCUS       XP_053920758             524 aa            linear   VRT 09-MAR-2023
DEFINITION  protein downstream neighbor of Son isoform X2 [Cuculus canorus].
ACCESSION   XP_053920758
VERSION     XP_053920758.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064783.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..524
                     /product="protein downstream neighbor of Son isoform X2"
                     /calculated_mol_wt=58114
     CDS             1..524
                     /gene="DONSON"
                     /coded_by="XM_054064783.1:823..2397"
                     /db_xref="GeneID:104064787"
ORIGIN      
        1 maapalpgys pgfkkppall rlkrkrlrsa etplaapgpa aprrrpaapr npfccgepar
       61 pqllesvced klttkaepfe rtdilplidd fhlplavpev pssprhefpa dwsiktrllf
      121 mssqpftwae hlkaqeeaqg ftqhcratet nlpqsvqqsl vywlhpslpw lqlfprigad
      181 rklagkaspw sqdealqqvl msdwsvsfts lynllkaklc pyfyvctyqf tvlfraagla
      241 gsdvltavis pttrglream rnegiefslp lleesrtrkq knsemnleme aadglevgnt
      301 tedgqepaps ddddddesfs wleemgvqdk vkkpdaisik lrkekhevqm dhkpeslalv
      361 kgtntftlln flinckslva vagaqaglpp tllspvafrg gtmqtlkars inakarvhla
      421 yedifsleii gpvmphslha ltmllrsaqr gafsavlyth eptavfntdl hcassafnqe
      481 tickdlpacg lhtktldqls qcptlgkssi rflemkdyay twks
//
LOCUS       XP_053920769             523 aa            linear   VRT 09-MAR-2023
DEFINITION  protein downstream neighbor of Son isoform X3 [Cuculus canorus].
ACCESSION   XP_053920769
VERSION     XP_053920769.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064794.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..523
                     /product="protein downstream neighbor of Son isoform X3"
                     /calculated_mol_wt=57986
     CDS             1..523
                     /gene="DONSON"
                     /coded_by="XM_054064794.1:823..2394"
                     /db_xref="GeneID:104064787"
ORIGIN      
        1 maapalpgys pgfkkppall rlkrkrlrsa etplaapgpa aprrrpaapr npfccgepar
       61 pqllesvced klttkaepfe rtdilplidd fhlplavpev pssprhefpa dwsiktrllf
      121 mssqpftwae hlkaqeeaqg ftqhcratet nlpqsvqslv ywlhpslpwl qlfprigadr
      181 klagkaspws qdealqqvlm sdwsvsftsl ynllkaklcp yfyvctyqft vlfraaglag
      241 sdvltavisp ttrglreamr negiefslpl leesrtrkqk nsemnlemea adglevgntt
      301 edgqepapsd dddddesfsw leemgvqdkv kkpdaisikl rkekhevqmd hkpeslalvk
      361 gtntftllnf linckslvav agaqaglppt llspvafrgg tmqtlkarsi nakarvhlay
      421 edifsleiig pvmphslhal tmllrsaqrg afsavlythe ptavfntdlh cassafnqet
      481 ickdlpacgl htktldqlsq cptlgkssir flemkdyayt wks
//
LOCUS       XP_053920778             357 aa            linear   VRT 09-MAR-2023
DEFINITION  quinone oxidoreductase-like protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053920778
VERSION     XP_053920778.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064803.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..357
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..357
                     /product="quinone oxidoreductase-like protein 1 isoform
                     X1"
                     /calculated_mol_wt=39609
     Region          31..355
                     /region_name="enoyl_red"
                     /note="enoyl reductase of polyketide synthase; cd05195"
                     /db_xref="CDD:176179"
     Site            order(44,131,152,154..157,176..177,181,208..209,232,262,
                     295..297,344..345,347,349)
                     /site_type="other"
                     /note="NAD(P) binding site [chemical binding]"
                     /db_xref="CDD:176179"
     CDS             1..357
                     /gene="CRYZL1"
                     /coded_by="XM_054064803.1:439..1512"
                     /db_xref="GeneID:104064786"
ORIGIN      
        1 mkalycqqns pggemtfafq erenlppprd ndvkvqvrac alswidakll seiklekeli
       61 pvgreisgvv levgrkvtff qpddevvgil pldseesglc evilihehcl vrkpekvcwv
      121 eaagtvrdgv raytalhyls qvspgktvlv mdgaspfgti aiqlaqhrga kvistaynve
      181 dkqylerlrs pvegirqplv vrvidvsngk idvaesclee tgglgvdiil dagvklysae
      241 destsksqll phkhdiitll gvgghwitte knlqldppds hslflkgatv sflndeiwnl
      301 sniqqgkylc iledimekls ssifrpqlde piplyeakvs memvqknqvr krqviqf
//
LOCUS       XP_053920783             357 aa            linear   VRT 09-MAR-2023
DEFINITION  quinone oxidoreductase-like protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053920783
VERSION     XP_053920783.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064808.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..357
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..357
                     /product="quinone oxidoreductase-like protein 1 isoform
                     X1"
                     /calculated_mol_wt=39609
     Region          31..355
                     /region_name="enoyl_red"
                     /note="enoyl reductase of polyketide synthase; cd05195"
                     /db_xref="CDD:176179"
     Site            order(44,131,152,154..157,176..177,181,208..209,232,262,
                     295..297,344..345,347,349)
                     /site_type="other"
                     /note="NAD(P) binding site [chemical binding]"
                     /db_xref="CDD:176179"
     CDS             1..357
                     /gene="CRYZL1"
                     /coded_by="XM_054064808.1:227..1300"
                     /db_xref="GeneID:104064786"
ORIGIN      
        1 mkalycqqns pggemtfafq erenlppprd ndvkvqvrac alswidakll seiklekeli
       61 pvgreisgvv levgrkvtff qpddevvgil pldseesglc evilihehcl vrkpekvcwv
      121 eaagtvrdgv raytalhyls qvspgktvlv mdgaspfgti aiqlaqhrga kvistaynve
      181 dkqylerlrs pvegirqplv vrvidvsngk idvaesclee tgglgvdiil dagvklysae
      241 destsksqll phkhdiitll gvgghwitte knlqldppds hslflkgatv sflndeiwnl
      301 sniqqgkylc iledimekls ssifrpqlde piplyeakvs memvqknqvr krqviqf
//
LOCUS       XP_053920792             357 aa            linear   VRT 09-MAR-2023
DEFINITION  quinone oxidoreductase-like protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053920792
VERSION     XP_053920792.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064817.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..357
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..357
                     /product="quinone oxidoreductase-like protein 1 isoform
                     X1"
                     /calculated_mol_wt=39609
     Region          31..355
                     /region_name="enoyl_red"
                     /note="enoyl reductase of polyketide synthase; cd05195"
                     /db_xref="CDD:176179"
     Site            order(44,131,152,154..157,176..177,181,208..209,232,262,
                     295..297,344..345,347,349)
                     /site_type="other"
                     /note="NAD(P) binding site [chemical binding]"
                     /db_xref="CDD:176179"
     CDS             1..357
                     /gene="CRYZL1"
                     /coded_by="XM_054064817.1:56..1129"
                     /db_xref="GeneID:104064786"
ORIGIN      
        1 mkalycqqns pggemtfafq erenlppprd ndvkvqvrac alswidakll seiklekeli
       61 pvgreisgvv levgrkvtff qpddevvgil pldseesglc evilihehcl vrkpekvcwv
      121 eaagtvrdgv raytalhyls qvspgktvlv mdgaspfgti aiqlaqhrga kvistaynve
      181 dkqylerlrs pvegirqplv vrvidvsngk idvaesclee tgglgvdiil dagvklysae
      241 destsksqll phkhdiitll gvgghwitte knlqldppds hslflkgatv sflndeiwnl
      301 sniqqgkylc iledimekls ssifrpqlde piplyeakvs memvqknqvr krqviqf
//
LOCUS       XP_053920803             349 aa            linear   VRT 09-MAR-2023
DEFINITION  quinone oxidoreductase-like protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053920803
VERSION     XP_053920803.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064828.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..349
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..349
                     /product="quinone oxidoreductase-like protein 1 isoform
                     X2"
                     /calculated_mol_wt=38716
     Region          31..347
                     /region_name="enoyl_red"
                     /note="enoyl reductase of polyketide synthase; cd05195"
                     /db_xref="CDD:176179"
     Site            order(44,131,152,154..157,176..177,181,198..199,224,254,
                     287..289,336..337,339,341)
                     /site_type="other"
                     /note="NAD(P) binding site [chemical binding]"
                     /db_xref="CDD:176179"
     CDS             1..349
                     /gene="CRYZL1"
                     /coded_by="XM_054064828.1:440..1489"
                     /db_xref="GeneID:104064786"
ORIGIN      
        1 mkalycqqns pggemtfafq erenlppprd ndvkvqvrac alswidakll seiklekeli
       61 pvgreisgvv levgrkvtff qpddevvgil pldseesglc evilihehcl vrkpekvcwv
      121 eaagtvrdgv raytalhyls qvspgktvlv mdgaspfgti aiqlaqhrga kvistaynve
      181 dkqylerlrs pvvrvidvsn gkidvaescl eetgglgvdi ildagvklys aedestsksq
      241 llphkhdiit llgvgghwit teknlqldpp dshslflkga tvsflndeiw nlsniqqgky
      301 lciledimek lsssifrpql depiplyeak vsmemvqknq vrkrqviqf
//
LOCUS       XP_053920813             330 aa            linear   VRT 09-MAR-2023
DEFINITION  quinone oxidoreductase-like protein 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053920813
VERSION     XP_053920813.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064838.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..330
                     /product="quinone oxidoreductase-like protein 1 isoform
                     X3"
                     /calculated_mol_wt=36264
     Region          31..>289
                     /region_name="enoyl_red"
                     /note="enoyl reductase of polyketide synthase; cd05195"
                     /db_xref="CDD:176179"
     CDS             1..330
                     /gene="CRYZL1"
                     /coded_by="XM_054064838.1:440..1432"
                     /db_xref="GeneID:104064786"
ORIGIN      
        1 mkalycqqns pggemtfafq erenlppprd ndvkvqvrac alswidakll seiklekeli
       61 pvgreisgvv levgrkvtff qpddevvgil pldseesglc evilihehcl vrkpekvcwv
      121 eaagtvrdgv raytalhyls qvspgktvlv mdgaspfgti aiqlaqhrga kvistaynve
      181 dkqylerlrs pvegirqplv vrvidvsngk idvaesclee tgglgvdiil dagvklysae
      241 destsksqll phkhdiitll gvgghwitte knlqldppds hslflkgatv sflndeiwnl
      301 sniqqgkyly thlgrhngei ikqhfqasag
//
LOCUS       XP_053920827             985 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat domain-containing protein 26-like [Cuculus canorus].
ACCESSION   XP_053920827
VERSION     XP_053920827.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064852.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..985
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..985
                     /product="ankyrin repeat domain-containing protein
                     26-like"
                     /calculated_mol_wt=115079
     Region          110..>760
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          230..533
                     /region_name="CCDC144C"
                     /note="CCDC144C protein coiled-coil region; pfam14915"
                     /db_xref="CDD:464371"
     Region          782..895
                     /region_name="DUF3496"
                     /note="Domain of unknown function (DUF3496); pfam12001"
                     /db_xref="CDD:463425"
     CDS             1..985
                     /gene="LOC128851996"
                     /coded_by="XM_054064852.1:187..3144"
                     /db_xref="GeneID:128851996"
ORIGIN      
        1 mdvtddlslt hssgrtseel ltanytkaml lleqlsvnpe dsaiffeiqd illeyeqmik
       61 rgkkshttly reegklqsek eesqlmveda qdmksilaqs diqsltctlk qeeekrlrve
      121 mlyektrkdl rrkedqycka vekkrqlelh sknlemelvt lkkllkqaee erdimqrqls
      181 qeqsartpqe eilknnlgre kdseeetrrt igkdseefet erekyllckn qllqdemaml
      241 rleldqvrgr heeegwkyle enetlkekne dlkkelklne ealtqavlqy tgqlnilkae
      301 savltskleq akegrdrlea etesfrsrlg tavqelerhq sskrdlertl qrerdewlrs
      361 qdklhydlsn vretnktlse qltkaesksn slenelhqlk qtlsektlll emtqkkltqa
      421 qcqakesdha rqlekdqvsk fqikqesmqe rlaqlqsenl llrqqledmh nkgiskekav
      481 ndvqdwfndl fnklradtek qvhlveernk elnmrcsdlr eevrkhesdk veregvirql
      541 qqeladalkk qsmseaslev ftcirselee dkvnlqkele klktkceseg kkakklvelk
      601 hpvevhleqe verntelqkd ckrlkqllsr svkklrmheq refnlqeemk skysdmvnda
      661 drlrtkvgel sqqlereskr cmqleaqnqh lqeelstmrk sheklekskh qlkeevanlk
      721 yhletkmvdh sqiekykkev eeqarqeiih klkqvniflq tqavsqdrve qirashhasl
      781 tnqlkqrird lecewdrlkk tqqdnilike stateveryk qlyleeeknr rnlanklert
      841 kerlaeakam lleerqrnrs livngmvggg laaspvlhst elghlgnslg lnrslnlggs
      901 flnsignals pkskveafva kvrqeldeki tkeleqattg letesarist vvpssgsstn
      961 svgdqdpvsr agqeyqdvlt knyll
//
LOCUS       XP_053920842             710 aa            linear   VRT 09-MAR-2023
DEFINITION  propionyl-CoA carboxylase alpha chain, mitochondrial [Cuculus
            canorus].
ACCESSION   XP_053920842
VERSION     XP_053920842.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064867.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..710
                     /product="propionyl-CoA carboxylase alpha chain,
                     mitochondrial"
                     /calculated_mol_wt=78053
     Region          45..502
                     /region_name="PccA"
                     /note="Acetyl/propionyl-CoA carboxylase, alpha subunit
                     [Lipid transport and metabolism]; COG4770"
                     /db_xref="CDD:443802"
     Region          507..635
                     /region_name="PCC_BT"
                     /note="Propionyl-coenzyme A carboxylase BT domain;
                     pfam18140"
                     /db_xref="CDD:465666"
     Region          644..709
                     /region_name="biotinyl_domain"
                     /note="The biotinyl-domain or biotin carboxyl carrier
                     protein (BCCP) domain is present in all biotin-dependent
                     enzymes, such as acetyl-CoA carboxylase, pyruvate
                     carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA
                     carboxylase, geranyl-CoA carboxylase; cd06850"
                     /db_xref="CDD:133459"
     Site            order(666,675..677,684)
                     /site_type="active"
                     /note="carboxyltransferase (CT) interaction site [active]"
                     /db_xref="CDD:133459"
     Site            676
                     /site_type="other"
                     /note="biotinylation site [posttranslational
                     modification]"
                     /db_xref="CDD:133459"
     CDS             1..710
                     /gene="PCCA"
                     /coded_by="XM_054064867.1:89..2221"
                     /db_xref="GeneID:104057315"
ORIGIN      
        1 mavvlrcgaa glraglecet lrsrwclits hklysslyda nektfekllv anrgeiacrv
       61 iktckkmgik tvaihsdvda navhvqmade avcvgpapts ksylnmdaim evikktraqa
      121 vhpgygflse nkefarrlas egvtfigpdt haiqamgdki eskllaknak vntipgfdgv
      181 vkdadeavri areigypvmi kasaggggkg mriawddeet regfrfssqe aassfgddrl
      241 liekfidnpr hieiqvladk hgnalwlner ecsiqrrnqk vveeapstfl dpetrramge
      301 qavalakavk yssagtvefl vdssknfyfl emntrlqveh pvtecitgld lvqemirvak
      361 gyplrhkqad ipingwavec rvyaedpyks fglpsigrls qyqeplhlps vrvdsgiqqg
      421 sdisiyydpm isklitygsn raealkrmee aldnyvirgv ahnisllrev ivhprfvqgd
      481 istkflpevy pdgfkghelt dlerrellat aaslyvaeql rsqrflgtqr ipiakskrss
      541 welsvrlgdg iypvvvskdg ssfsvevdgm klnvtsewnl aspllsvtid gtqrtiqrls
      601 rnasgdtsiq flgtvykiqv ltkvaaelsk ympekaaedt ssilrspmpg avvavsvkpg
      661 dtvsegqeic vieamkmqns miaaktgkvk avhckagdtv gegdllvele
//
LOCUS       XP_053920852             165 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-glutamylaminecyclotransferase isoform X1 [Cuculus canorus].
ACCESSION   XP_053920852
VERSION     XP_053920852.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064877.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..165
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..165
                     /product="gamma-glutamylaminecyclotransferase isoform X1"
                     /calculated_mol_wt=18435
     Region          12..>109
                     /region_name="GGACT"
                     /note="Gamma-glutamyl cyclotransferase, AIG2-like;
                     pfam06094"
                     /db_xref="CDD:428763"
     Site            order(12,15,17..18,89..90,96)
                     /site_type="active"
                     /note="putative active site pocket [active]"
                     /db_xref="CDD:119400"
     Site            order(64..65,67,96..98,101..102,104,128)
                     /site_type="other"
                     /note="dimerization interface [polypeptide binding]"
                     /db_xref="CDD:119400"
     Site            90
                     /site_type="active"
                     /note="putative catalytic residue [active]"
                     /db_xref="CDD:119400"
     CDS             1..165
                     /gene="GGACT"
                     /coded_by="XM_054064877.1:220..717"
                     /db_xref="GeneID:104060253"
ORIGIN      
        1 mqaafagtma rvfvygtlkk gqpnykymin takglakfqg rgrtvekypl viagkynipy
       61 mlnipgtghh vageiysvde qmlqfldefe gcpdmyqrtl krievveweg kggtgelraa
      121 aegilecfvy stttyppewv glpyhdsyds sgkhglsyvl resrd
//
LOCUS       XP_053920858             157 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-glutamylaminecyclotransferase isoform X2 [Cuculus canorus].
ACCESSION   XP_053920858
VERSION     XP_053920858.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064883.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..157
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..157
                     /product="gamma-glutamylaminecyclotransferase isoform X2"
                     /calculated_mol_wt=17657
     Region          4..>101
                     /region_name="GGACT"
                     /note="Gamma-glutamyl cyclotransferase, AIG2-like;
                     pfam06094"
                     /db_xref="CDD:428763"
     Site            order(4,7,9..10,81..82,88)
                     /site_type="active"
                     /note="putative active site pocket [active]"
                     /db_xref="CDD:119400"
     Site            order(56..57,59,88..90,93..94,96,120)
                     /site_type="other"
                     /note="dimerization interface [polypeptide binding]"
                     /db_xref="CDD:119400"
     Site            82
                     /site_type="active"
                     /note="putative catalytic residue [active]"
                     /db_xref="CDD:119400"
     CDS             1..157
                     /gene="GGACT"
                     /coded_by="XM_054064883.1:136..609"
                     /db_xref="GeneID:104060253"
ORIGIN      
        1 marvfvygtl kkgqpnykym intakglakf qgrgrtveky plviagkyni pymlnipgtg
       61 hhvageiysv deqmlqflde fegcpdmyqr tlkrievvew egkggtgelr aaaegilecf
      121 vystttyppe wvglpyhdsy dssgkhglsy vlresrd
//
LOCUS       XP_053920867             220 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related protein Rab-21 [Cuculus canorus].
ACCESSION   XP_053920867
VERSION     XP_053920867.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064892.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..220
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..220
                     /product="ras-related protein Rab-21"
                     /calculated_mol_wt=23975
     Region          16..177
                     /region_name="Rab21"
                     /note="Rab GTPase family 21 (Rab21); cd04123"
                     /db_xref="CDD:133323"
     Site            16..17
                     /site_type="other"
                     /note="Rab subfamily motif 1 (RabSF1)"
                     /db_xref="CDD:133323"
     Site            22..29
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:133323"
     Site            order(24,27..30,40,46..47,128..129,131,158..160)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:133323"
     Site            order(30..40,45..46)
                     /site_type="other"
                     /note="Rab subfamily motif 2 (RabSF2)"
                     /db_xref="CDD:133323"
     Site            order(40,45..53)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:133323"
     Site            order(45,49..56,63,65)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133323"
     Site            47
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:133323"
     Site            order(48,50..52,67,69,76..77,80,84,86..89)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:133323"
     Site            order(48..49,51,69..70,77,79,81..83)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133323"
     Site            48..52
                     /site_type="other"
                     /note="Rab family motif 1 (RabF1)"
                     /db_xref="CDD:133323"
     Site            65..69
                     /site_type="other"
                     /note="Rab family motif 2 (RabF2)"
                     /db_xref="CDD:133323"
     Site            70..73
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:133323"
     Site            order(73,75..85)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:133323"
     Site            76..81
                     /site_type="other"
                     /note="Rab family motif 3 (RabF3)"
                     /db_xref="CDD:133323"
     Site            84..88
                     /site_type="other"
                     /note="Rab family motif 4 (RabF4)"
                     /db_xref="CDD:133323"
     Site            93..98
                     /site_type="other"
                     /note="Rab family motif 5 (RabF5)"
                     /db_xref="CDD:133323"
     Site            121..125
                     /site_type="other"
                     /note="Rab subfamily motif 3 (RabSF3)"
                     /db_xref="CDD:133323"
     Site            128..131
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:133323"
     Site            158..160
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:133323"
     Site            174..177
                     /site_type="other"
                     /note="Rab subfamily motif 4 (RabSF4)"
                     /db_xref="CDD:133323"
     CDS             1..220
                     /gene="RAB21"
                     /coded_by="XM_054064892.1:212..874"
                     /db_xref="GeneID:104064028"
ORIGIN      
        1 maagpgaaag grsfsfkvvl lgegcvgkts lvlrycenkf ndkhittlqa sfltkklnig
       61 gkrvnlaiwd tagqerfhal gpiyyrdsng ailvyditde dsfqkvknwv kelrkmlgne
      121 iclcivgnki dlekerhvsv qeaetyaesv gakhyhtsak qnkgieelfl dlckrmieta
      181 qvderargng ssqsgtarrg vqiiddepqv qssggccssg
//
LOCUS       XP_053920882             434 aa            linear   VRT 09-MAR-2023
DEFINITION  NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053920882
VERSION     XP_053920882.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064907.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..434
                     /product="NADH dehydrogenase [ubiquinone] flavoprotein 3,
                     mitochondrial isoform X1"
                     /calculated_mol_wt=46954
     Region          393..427
                     /region_name="NDUFV3"
                     /note="NADH dehydrogenase [ubiquinone] flavoprotein 3,
                     mitochondrial; pfam15880"
                     /db_xref="CDD:464921"
     CDS             1..434
                     /gene="NDUFV3"
                     /coded_by="XM_054064907.1:108..1412"
                     /db_xref="GeneID:104059275"
ORIGIN      
        1 maapavlgcg ravtrkvlql eapglrgasp aaalctrpag sgmpptnvva pqgstkllai
       61 kasvefpkml ssssllasen kgesisstnl kegsepaaed irmfmsrktv vafpqrvvvs
      121 sleeeklttp itggglrrel aeeetsssss sdsdsssdse eeidnddhse vaiktkvefp
      181 rrdsifseni avkasmlake nlsqkspkey vakkklrkte tdvspikqva fsktsishvt
      241 skskarhpev karhpevkat pkeadqqklv leprmvkrrd ltditrksdn leeksietqv
      301 aaiqlkassv aqedkkkklv srgeekkvke aqeseaevta pklkeetses tvlamstaak
      361 ektiqeagvq agekstieea taaaepapee efdnstyknl qhhdyniytf adavvglskf
      421 rqpqpssgrp sprh
//
LOCUS       XP_053920892             366 aa            linear   VRT 09-MAR-2023
DEFINITION  NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial
            isoform X2 [Cuculus canorus].
ACCESSION   XP_053920892
VERSION     XP_053920892.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064917.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..366
                     /product="NADH dehydrogenase [ubiquinone] flavoprotein 3,
                     mitochondrial isoform X2"
                     /calculated_mol_wt=40219
     Region          325..359
                     /region_name="NDUFV3"
                     /note="NADH dehydrogenase [ubiquinone] flavoprotein 3,
                     mitochondrial; pfam15880"
                     /db_xref="CDD:464921"
     CDS             1..366
                     /gene="NDUFV3"
                     /coded_by="XM_054064917.1:3190..4290"
                     /db_xref="GeneID:104059275"
ORIGIN      
        1 mlssssllas enkgesisst nlkegsepaa edirmfmsrk tvvafpqrvv vssleeeklt
       61 tpitggglrr elaeeetsss sssdsdsssd seeeidnddh sevaiktkve fprrdsifse
      121 niavkasmla kenlsqkspk eyvakkklrk tetdvspikq vafsktsish vtskskarhp
      181 evkarhpevk atpkeadqqk lvleprmvkr rdltditrks dnleeksiet qvaaiqlkas
      241 svaqedkkkk lvsrgeekkv keaqeseaev tapklkeets estvlamsta akektiqeag
      301 vqagekstie eataaaepap eeefdnstyk nlqhhdyniy tfadavvgls kfrqpqpssg
      361 rpsprh
//
LOCUS       XP_053920902             102 aa            linear   VRT 09-MAR-2023
DEFINITION  NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial
            isoform X3 [Cuculus canorus].
ACCESSION   XP_053920902
VERSION     XP_053920902.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064927.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..102
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..102
                     /product="NADH dehydrogenase [ubiquinone] flavoprotein 3,
                     mitochondrial isoform X3"
                     /calculated_mol_wt=10597
     Region          61..95
                     /region_name="NDUFV3"
                     /note="NADH dehydrogenase [ubiquinone] flavoprotein 3,
                     mitochondrial; pfam15880"
                     /db_xref="CDD:464921"
     CDS             1..102
                     /gene="NDUFV3"
                     /coded_by="XM_054064927.1:108..416"
                     /db_xref="GeneID:104059275"
ORIGIN      
        1 maapavlgcg ravtrkvlql eapglrgasp aaalctrpag sgmpptkata aaepapeeef
       61 dnstyknlqh hdyniytfad avvglskfrq pqpssgrpsp rh
//
LOCUS       XP_053920917             420 aa            linear   VRT 09-MAR-2023
DEFINITION  tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4
            [Cuculus canorus].
ACCESSION   XP_053920917
VERSION     XP_053920917.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064942.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..420
                     /product="tRNA (guanine-N(7)-)-methyltransferase
                     non-catalytic subunit WDR4"
                     /calculated_mol_wt=47129
     Region          <63..229
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          80..114
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          118..154
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          162..195
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          199..>273
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cl29593"
                     /db_xref="CDD:475233"
     Region          204..246
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          259..300
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..420
                     /gene="WDR4"
                     /coded_by="XM_054064942.1:71..1333"
                     /db_xref="GeneID:104059274"
ORIGIN      
        1 megggrnggr spgsrpalal rgarmaiggg srflaarhkd agddslfvyd cvnvekttlg
       61 nkgqdgkptd kgsddilafa fspsgdyfal tddskrlilf rtkpswecvs irsvnrkcts
      121 lvitaaedki liadksgdvy sysitepqae gklelghlsl lldvalspdd ryivtadrde
      181 kirvsltkap yiivsyclgh tefvnkilvi pnypdlllsa sgdstlrlwe yksgeevycc
      241 hlssicgpet tktdekypvs ritycchgdy vailcdsipt vyifqldava qqlvyrqqis
      301 lkhkiwdiaf eetrdlwilq edreaplqly racdeqwkpv tddeglqkms kylqdnwavf
      361 eafvgveshy nslykasfdd mdsclertee riqqrkkkrq dlqhgsngqt kkmkteessl
//
LOCUS       XP_053920928             735 aa            linear   VRT 09-MAR-2023
DEFINITION  muskelin isoform X1 [Cuculus canorus].
ACCESSION   XP_053920928
VERSION     XP_053920928.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064953.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..735
                     /product="muskelin isoform X1"
                     /calculated_mol_wt=84585
     Region          12..207
                     /region_name="Muskelin_N"
                     /note="Muskelin N-terminus; pfam06588"
                     /db_xref="CDD:284099"
     Region          271..322
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          284..559
                     /region_name="NanM"
                     /note="N-acetylneuraminic acid mutarotase [Cell
                     wall/membrane/envelope biogenesis]; COG3055"
                     /db_xref="CDD:442289"
     Region          326..384
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          456..512
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..735
                     /gene="MKLN1"
                     /coded_by="XM_054064953.1:30..2237"
                     /db_xref="GeneID:104065022"
ORIGIN      
        1 maaagpgptg vesrvlgytl hrwssfssty lpenilvdkp ndqssrwsse snyppqylil
       61 klerpaivqs itfgkyekth vcnlkkfkvf ggmneenmtd llssglkndy nketftlkhk
      121 ideqmfpcrf ikivpllswg psfnfsiwyv elngiddpdv vqpclnwysk yreqeairlc
      181 lkhfrqhnyt eafeslqkkt kialehpmlt dlhdklvlkg dfdaceelie kavndglfnq
      241 yisqqeykpr wgqiipkstk gdgedsrpgm rgghqmvidv qtetvylfgg wdgtqdladf
      301 waysvkenqw tcisrdteke sgpsarschk mcidiqrrqi ytlgryldss vrnskslksd
      361 fyrydidtnt wmllsedtaa dggpklvfdh qmcmdsekhm iytfggrilt cngsvddsra
      421 sepqfsglfa fdcqcqtwkl lredscnagp ediqsrighc mlfhsknrcl yvfggqrskt
      481 ylndffsydv dsdhvdiisd gtkkdsgmvp mtgftqrati dpelneihvl sglskdkekr
      541 eenvrnsfwi ydivrnswsc vykndqaake npgkslqeee pcprfahqlv ydelhkvhyl
      601 fggnpgkscs pkmrlddfws lklcrpskey llrhckylir khrfeekaqt dplsalkylq
      661 ndlyvtvdhs dpeetkefql lasalfksgs dfttlgfsdv dhtyaqrtql fdtlvnffpd
      721 nmtppkgnlv dlitl
//
LOCUS       XP_053920936             528 aa            linear   VRT 09-MAR-2023
DEFINITION  muskelin isoform X2 [Cuculus canorus].
ACCESSION   XP_053920936
VERSION     XP_053920936.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064961.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..528
                     /product="muskelin isoform X2"
                     /calculated_mol_wt=60554
     Region          64..115
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          77..352
                     /region_name="NanM"
                     /note="N-acetylneuraminic acid mutarotase [Cell
                     wall/membrane/envelope biogenesis]; COG3055"
                     /db_xref="CDD:442289"
     Region          119..177
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          249..305
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..528
                     /gene="MKLN1"
                     /coded_by="XM_054064961.1:361..1947"
                     /db_xref="GeneID:104065022"
ORIGIN      
        1 mltdlhdklv lkgdfdacee liekavndgl fnqyisqqey kprwgqiipk stkgdgedsr
       61 pgmrgghqmv idvqtetvyl fggwdgtqdl adfwaysvke nqwtcisrdt ekesgpsars
      121 chkmcidiqr rqiytlgryl dssvrnsksl ksdfyrydid tntwmllsed taadggpklv
      181 fdhqmcmdse khmiytfggr iltcngsvdd srasepqfsg lfafdcqcqt wkllredscn
      241 agpediqsri ghcmlfhskn rclyvfggqr sktylndffs ydvdsdhvdi isdgtkkdsg
      301 mvpmtgftqr atidpelnei hvlsglskdk ekreenvrns fwiydivrns wscvykndqa
      361 akenpgkslq eeepcprfah qlvydelhkv hylfggnpgk scspkmrldd fwslklcrps
      421 keyllrhcky lirkhrfeek aqtdplsalk ylqndlyvtv dhsdpeetke fqllasalfk
      481 sgsdfttlgf sdvdhtyaqr tqlfdtlvnf fpdnmtppkg nlvdlitl
//
LOCUS       XP_053920943             528 aa            linear   VRT 09-MAR-2023
DEFINITION  muskelin isoform X2 [Cuculus canorus].
ACCESSION   XP_053920943
VERSION     XP_053920943.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064968.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..528
                     /product="muskelin isoform X2"
                     /calculated_mol_wt=60554
     Region          64..115
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          77..352
                     /region_name="NanM"
                     /note="N-acetylneuraminic acid mutarotase [Cell
                     wall/membrane/envelope biogenesis]; COG3055"
                     /db_xref="CDD:442289"
     Region          119..177
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          249..305
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..528
                     /gene="MKLN1"
                     /coded_by="XM_054064968.1:364..1950"
                     /db_xref="GeneID:104065022"
ORIGIN      
        1 mltdlhdklv lkgdfdacee liekavndgl fnqyisqqey kprwgqiipk stkgdgedsr
       61 pgmrgghqmv idvqtetvyl fggwdgtqdl adfwaysvke nqwtcisrdt ekesgpsars
      121 chkmcidiqr rqiytlgryl dssvrnsksl ksdfyrydid tntwmllsed taadggpklv
      181 fdhqmcmdse khmiytfggr iltcngsvdd srasepqfsg lfafdcqcqt wkllredscn
      241 agpediqsri ghcmlfhskn rclyvfggqr sktylndffs ydvdsdhvdi isdgtkkdsg
      301 mvpmtgftqr atidpelnei hvlsglskdk ekreenvrns fwiydivrns wscvykndqa
      361 akenpgkslq eeepcprfah qlvydelhkv hylfggnpgk scspkmrldd fwslklcrps
      421 keyllrhcky lirkhrfeek aqtdplsalk ylqndlyvtv dhsdpeetke fqllasalfk
      481 sgsdfttlgf sdvdhtyaqr tqlfdtlvnf fpdnmtppkg nlvdlitl
//
LOCUS       XP_053920954             769 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase B-raf isoform X1 [Cuculus canorus].
ACCESSION   XP_053920954
VERSION     XP_053920954.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064979.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..769
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..769
                     /product="serine/threonine-protein kinase B-raf isoform
                     X1"
                     /calculated_mol_wt=84885
     Region          156..234
                     /region_name="RBD_BRAF"
                     /note="Ras-binding domain (RBD) found in
                     serine/threonine-protein kinase BRAF; cd17134"
                     /db_xref="CDD:340654"
     Site            order(158,160,165..170,172,185,189..191)
                     /site_type="other"
                     /note="putative RBD_Raf-Ras interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:340654"
     Site            order(158,165,167..170,185,188..191)
                     /site_type="other"
                     /note="putative RBD_Raf-KRas interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:340654"
     Site            order(176..178,198,200..201,208..211,213..215,218,227,
                     229..230,232..234)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:340654"
     Site            223
                     /site_type="other"
                     /note="putative Ca binding site [ion binding]"
                     /db_xref="CDD:340654"
     Region          232..291
                     /region_name="C1_B-Raf"
                     /note="protein kinase C conserved region 1 (C1 domain)
                     found in B-Raf (Rapidly Accelerated Fibrosarcoma) kinase
                     and similar proteins; cd20871"
                     /db_xref="CDD:410421"
     Region          465..717
                     /region_name="STKc_Raf"
                     /note="Catalytic domain of the Serine/Threonine Kinases,
                     Raf (Rapidly Accelerated Fibrosarcoma) kinases; cd14062"
                     /db_xref="CDD:270964"
     Site            order(465..469,473,483,485,516,531..534,538,540,578,580,
                     582..583,585,596,599,617..620)
                     /site_type="active"
                     /db_xref="CDD:270964"
     Site            order(465..469,473,483,485,516,531..534,538,578,580,
                     582..583,585,596)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270964"
     Site            order(469,538,540,578,580,582,599,617..620)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270964"
     Site            order(477,479..480,507..513,517..519,564,567..568,
                     571..572,588,590,717)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:270964"
     Site            order(595..608,614..620)
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270964"
     CDS             1..769
                     /gene="BRAF"
                     /coded_by="XM_054064979.1:47..2356"
                     /db_xref="GeneID:104058945"
ORIGIN      
        1 maalssgrsa egaslfngda eteppppppp algacyaagg gdpaipeevw nikqmikltq
       61 ehiealldkf ggehnppsiy leayeeytsk ldalqqreqq llesmgngtd fsvsssastd
      121 tvassssssl siapsslsvy qnpadmsrnn pkspqkpivr vflpnkqrtv vparcgvtvr
      181 dslkkalmmr glipeccavy riqdgekkpi gwdtdiswlt geelhvevle nvpltthnfv
      241 rktfftlafc dfcrkllfqg frcqtcgykf hqrcstevpl mcvnydqldl lfvskffehh
      301 pipqeeaslg ettpasgsyp svppsdsvgp pilpspspsk sipipqplrp adedhrnqfg
      361 qrdrsssapn vhintiepvn iddlirdqgl rgeggsaagl satppaslpg sltnvkalqk
      421 spgpqrerks ssssedrnrm ktlgrrdssd dweipdgqit vgqrigsgsf gtvykgkwhg
      481 dvavkmlnvt aptpqqlqaf knevgvlrkt rhvnillfmg ystkpqlaiv tqwcegssly
      541 hhlhiietkf emiklidiar qtaqgmdylh aksiihrdlk snniflhedl tvkigdfgla
      601 tvksrwsgsh qfeqlsgsil wmapevirmq dknpysfqsd vyafgivlye lmtgqlpysn
      661 innrdqiifm vgrgylspdl skvrsncpka mkrlmaeclk kkrderplfp qilasiella
      721 rslpkihrsa sepslnragf qtedfslyac aspktpiqag gygefaafk
//
LOCUS       XP_053920961             715 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase B-raf isoform X2 [Cuculus canorus].
ACCESSION   XP_053920961
VERSION     XP_053920961.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064986.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..715
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..715
                     /product="serine/threonine-protein kinase B-raf isoform
                     X2"
                     /calculated_mol_wt=79539
     Region          102..180
                     /region_name="RBD_BRAF"
                     /note="Ras-binding domain (RBD) found in
                     serine/threonine-protein kinase BRAF; cd17134"
                     /db_xref="CDD:340654"
     Site            order(104,106,111..116,118,131,135..137)
                     /site_type="other"
                     /note="putative RBD_Raf-Ras interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:340654"
     Site            order(104,111,113..116,131,134..137)
                     /site_type="other"
                     /note="putative RBD_Raf-KRas interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:340654"
     Site            order(122..124,144,146..147,154..157,159..161,164,173,
                     175..176,178..180)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:340654"
     Site            169
                     /site_type="other"
                     /note="putative Ca binding site [ion binding]"
                     /db_xref="CDD:340654"
     Region          178..237
                     /region_name="C1_B-Raf"
                     /note="protein kinase C conserved region 1 (C1 domain)
                     found in B-Raf (Rapidly Accelerated Fibrosarcoma) kinase
                     and similar proteins; cd20871"
                     /db_xref="CDD:410421"
     Region          411..663
                     /region_name="STKc_Raf"
                     /note="Catalytic domain of the Serine/Threonine Kinases,
                     Raf (Rapidly Accelerated Fibrosarcoma) kinases; cd14062"
                     /db_xref="CDD:270964"
     Site            order(411..415,419,429,431,462,477..480,484,486,524,526,
                     528..529,531,542,545,563..566)
                     /site_type="active"
                     /db_xref="CDD:270964"
     Site            order(411..415,419,429,431,462,477..480,484,524,526,
                     528..529,531,542)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270964"
     Site            order(415,484,486,524,526,528,545,563..566)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270964"
     Site            order(423,425..426,453..459,463..465,510,513..514,
                     517..518,534,536,663)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:270964"
     Site            order(541..554,560..566)
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270964"
     CDS             1..715
                     /gene="BRAF"
                     /coded_by="XM_054064986.1:159..2306"
                     /db_xref="GeneID:104058945"
ORIGIN      
        1 mikltqehie alldkfggeh nppsiyleay eeytskldal qqreqqlles mgngtdfsvs
       61 ssastdtvas ssssslsiap sslsvyqnpa dmsrnnpksp qkpivrvflp nkqrtvvpar
      121 cgvtvrdslk kalmmrglip eccavyriqd gekkpigwdt diswltgeel hvevlenvpl
      181 tthnfvrktf ftlafcdfcr kllfqgfrcq tcgykfhqrc stevplmcvn ydqldllfvs
      241 kffehhpipq eeaslgettp asgsypsvpp sdsvgppilp spspsksipi pqplrpaded
      301 hrnqfgqrdr sssapnvhin tiepvniddl irdqglrgeg gsaaglsatp paslpgsltn
      361 vkalqkspgp qrerksssss edrnrmktlg rrdssddwei pdgqitvgqr igsgsfgtvy
      421 kgkwhgdvav kmlnvtaptp qqlqafknev gvlrktrhvn illfmgystk pqlaivtqwc
      481 egsslyhhlh iietkfemik lidiarqtaq gmdylhaksi ihrdlksnni flhedltvki
      541 gdfglatvks rwsgshqfeq lsgsilwmap evirmqdknp ysfqsdvyaf givlyelmtg
      601 qlpysninnr dqiifmvgrg ylspdlskvr sncpkamkrl maeclkkkrd erplfpqila
      661 siellarslp kihrsaseps lnragfqted fslyacaspk tpiqaggyge faafk
//
LOCUS       XP_053920971             808 aa            linear   VRT 09-MAR-2023
DEFINITION  protein phosphatase 1 regulatory subunit 29 [Cuculus canorus].
ACCESSION   XP_053920971
VERSION     XP_053920971.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054064996.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..808
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..808
                     /product="protein phosphatase 1 regulatory subunit 29"
                     /calculated_mol_wt=90098
     Region          <67..>212
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          67..87
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          88..111
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          112..135
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          136..159
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          160..173
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          184..203
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          192..>234
                     /region_name="LRRCT"
                     /note="Leucine rich repeat C-terminal domain; smart00082"
                     /db_xref="CDD:214507"
     Region          204..230
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     CDS             1..808
                     /gene="ELFN2"
                     /coded_by="XM_054064996.1:340..2766"
                     /db_xref="GeneID:104065867"
ORIGIN      
        1 mraplqtmmc lglwaaallc ffspgtvrgd cwliegdkgy vwlaicsqnq ppyetipqhi
       61 nstvhdlrln enklkvvlys slnrfgnltd lnltkneisy iedgafmgqs nlqvlqlgyn
      121 kltnltegml rgmarlqflf vqhnlielvt ptafsecpsl isidlssnrl srlegntfts
      181 lsnlmvcela gnpfncdcsl ysflnwlalf nnvtknydrl qcetprefag ypllvprphh
      241 nrnaitifqs mcrggtipsl srvnptpytp dsqrdldegs aispgdflsv kppassttds
      301 sfspsiklhd vtitsailmv tipmpyskmy vlvqynnsyv sdiatlkskk eyvtvnklka
      361 htdytfcvas irnnrrynht cltfatrskg redpisstst tthyimttlg clfgmvivlg
      421 vvyyclrkrr mqeekqksln vkktilemry gsdidtstmv hpsqklgepp vipvsrmssi
      481 psmigeklpp sksmeagmet pkvttkgnyi evrtgggdgl ertqrdedlr eldngqgsaa
      541 eistiakevd kvnqiinnci dalkldtasf lgggtgvdsd mafecqsipa sssgglerps
      601 flsppykess hhplqrqlsa daavarktcs vsssgsiksa kvfsldvpdh pplsksdsky
      661 iekgsplnsp ldrlplvspg aihhlevkps yhcsehrhsf palyyeesad tlsqrvsflk
      721 plsrskrdst ysqlsprhyf sgyssspeys sesthkiwer frpykkhhre evymaaghal
      781 rkkvqfakde dlhdildywk gvsaqqkl
//
LOCUS       XP_009566690             405 aa            linear   VRT 09-MAR-2023
DEFINITION  cytohesin-4 [Cuculus canorus].
ACCESSION   XP_009566690
VERSION     XP_009566690.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568395.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566690.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..405
                     /product="cytohesin-4"
                     /calculated_mol_wt=46215
     Region          <2..>120
                     /region_name="46"
                     /note="endonuclease subunit; Provisional; PHA02562"
                     /db_xref="CDD:222878"
     Region          74..254
                     /region_name="Sec7"
                     /note="Sec7 domain; pfam01369"
                     /db_xref="CDD:460178"
     Region          269..388
                     /region_name="PH_GRP1-like"
                     /note="General Receptor for Phosphoinositides-1-like
                     Pleckstrin homology (PH) domain; cd01252"
                     /db_xref="CDD:269954"
     Site            order(269,296,298,300,310,313,315,346..348,350,353..358,
                     388)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:269954"
     Site            order(279,282,286,288,290,301,311,349,360..361)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:269954"
     CDS             1..405
                     /gene="CYTH4"
                     /coded_by="XM_009568395.2:121..1338"
                     /db_xref="GeneID:104065866"
ORIGIN      
        1 mdicptgssd lceteeaeie kirqhrqell edikklkeei aevfaeiecf qkserqeagn
       61 npgeqtskls qsdkilslgr kkfnmdpakg iqylieqkvl ssdlqeiakf lhkgeglnkt
      121 aigdylggrd ptnvqilqaf vachqfanln lvqalrqflw sfrlpgeaqk idrmmeafan
      181 wyckcnpgvf qstdtcyils fsiimlntsl hnpnvkdkpp ferfvsinrg idngedlpee
      241 llknlfvsik nepfsipedd gndlthtffn pnregwllkl ggrvktwkrr wfiltdncly
      301 yfeyttdkep lgiiplenls vrkvddpkkp ncfelfnpnc kgqkikackt dgdgkvvegk
      361 hqsykisaat paerdewiea irtsitqdpf ydlvsarkkk iaskn
//
LOCUS       XP_009566687             401 aa            linear   VRT 09-MAR-2023
DEFINITION  somatostatin receptor type 3 [Cuculus canorus].
ACCESSION   XP_009566687
VERSION     XP_009566687.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568392.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566687.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..401
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..401
                     /product="somatostatin receptor type 3"
                     /calculated_mol_wt=44044
     Region          44..322
                     /region_name="7tmA_SSTR3"
                     /note="somatostatin receptor type 3, member of the class A
                     family of seven-transmembrane G protein-coupled receptors;
                     cd15972"
                     /db_xref="CDD:320638"
     Region          45..71
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320638"
     Region          78..104
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320638"
     Site            order(99,102..103,115..120,122..123,126,171,173..177,202,
                     205..207,209..211,213..214,268,271..272,274..275,278,
                     289..290,292..294,297,300..301)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:320638"
     Region          115..145
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320638"
     Region          157..179
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320638"
     Region          202..231
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320638"
     Region          248..278
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320638"
     Region          290..315
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320638"
     CDS             1..401
                     /gene="SSTR3"
                     /coded_by="XM_009568392.2:3113..4318"
                     /db_xref="GeneID:104065864"
ORIGIN      
        1 mdtsafslpt pavseegnas gswagfttpn ssttetpgvi vssvlipvvy livcvvglag
       61 nslviyvvlr hsvsesvtnv yifnlalade lfmlglpfla aqnalsywpf gsfmcrlvma
      121 vdainqftsi fcltvmsvdr ylavvhpgks skwrtarvak avsatvwvls sivvlpvvif
      181 sdvplgmstc hiqwpepasv wragfivyta tlgffgpllv iclcyllivv kvrssgrrvr
      241 alsskhklse rrvtrmvvav vavfilcwlp fyvlniinvv cplpeepslf gvyflvvvlp
      301 yanscanpii ygflsyrfkq gfrrailrps rrvqsqevpa cpaektddeg eegeiskite
      361 ngndrqehpl sggegerneh kqlpeepvec eksnklhvsy l
//
LOCUS       XP_009566688             192 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related C3 botulinum toxin substrate 2 [Cuculus canorus].
ACCESSION   XP_009566688
VERSION     XP_009566688.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568393.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..192
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..192
                     /product="ras-related C3 botulinum toxin substrate 2"
                     /calculated_mol_wt=21271
     Region          3..176
                     /region_name="Rac1_like"
                     /note="Ras-related C3 botulinum toxin substrate 1 (rho
                     family, small GTP binding protein Rac1)-like consists of
                     Rac1, Rac2 and Rac3; cd01871"
                     /db_xref="CDD:206663"
     Site            order(3,5,31..32,35..36,38..39,41,43,52,56..61,64..67,
                     70..71,73..74)
                     /site_type="other"
                     /note="GEF (guanine nucleotide exchange factor)
                     interaction site [polypeptide binding]"
                     /db_xref="CDD:206663"
     Site            10..17
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206663"
     Site            order(13,15..18,116,118..119,159)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206663"
     Site            order(22,25..26,28,30..31,160,162)
                     /site_type="active"
                     /note="p67PhoxTPR effector interaction site [active]"
                     /db_xref="CDD:206663"
     Site            25..40
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206663"
     Site            order(32,34,36..38,61..64,67,70)
                     /site_type="other"
                     /note="GAP (GTPase-activating protein) interaction site
                     [polypeptide binding]"
                     /db_xref="CDD:206663"
     Site            order(35..36,59,64,66..67,69..70,73,103..104,106)
                     /site_type="other"
                     /note="GDI (guanine nucleotide dissociation inhibitor)
                     interaction site [polypeptide binding]"
                     /db_xref="CDD:206663"
     Site            order(35..37,39,56..58,64,67,70..71,73..74)
                     /site_type="other"
                     /note="Arfaptin/Por effector interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206663"
     Site            35
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206663"
     Site            57..60
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206663"
     Site            60..77
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206663"
     Site            115..118
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206663"
     Site            158..160
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206663"
     CDS             1..192
                     /gene="RAC2"
                     /coded_by="XM_009568393.2:140..718"
                     /db_xref="GeneID:104065865"
ORIGIN      
        1 mqaikcvvvg dgavgktcll isyttnafpg eyiptvfdny sanvmvdskp vnlglwdtag
       61 qedydrlrpl sypqtdvfli cfslvspasy envrakwfpe vrhhcpstpi ilvgtkldlr
      121 ddkdtieklk ekklapityp qglalakeid svkylecsal tqrglktvfd eairavlcpq
      181 ptrtkkracs ll
//
LOCUS       XP_009560758             233 aa            linear   VRT 09-MAR-2023
DEFINITION  natural killer cells antigen CD94 [Cuculus canorus].
ACCESSION   XP_009560758
VERSION     XP_009560758.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009562463.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..233
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..233
                     /product="natural killer cells antigen CD94"
                     /calculated_mol_wt=26473
     Region          111..227
                     /region_name="CLECT_NK_receptors_like"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in natural killer cell receptors (NKRs); cd03593"
                     /db_xref="CDD:153063"
     Site            order(165,192,210,212..213)
                     /site_type="other"
                     /note="ligand binding surface [chemical binding]"
                     /db_xref="CDD:153063"
     CDS             1..233
                     /gene="LOC104060652"
                     /coded_by="XM_009562463.2:140..841"
                     /db_xref="GeneID:104060652"
ORIGIN      
        1 medeegytal nlrpsasiit sgysssrkrs vfeapyscit vdrasasssv wrpvafafla
       61 lclvlltgli allalffqvs kdpedgkklq emrealcfeg keknetkcdl cpaswrnsga
      121 dscfyiskqk ktwkesqefc fsrnstllvl kdkekmvslp qdskfywvgl syisersswy
      181 wedgtafske etswvmlydn ifcaslygri iyaspscstk qfwicekvtv hft
//
LOCUS       XP_009560730             182 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 52B [Cuculus canorus].
ACCESSION   XP_009560730
VERSION     XP_009560730.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009562435.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009560730.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..182
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..182
                     /product="transmembrane protein 52B"
                     /calculated_mol_wt=19723
     Region          24..162
                     /region_name="TMEM52"
                     /note="Transmembrane 52; pfam14979"
                     /db_xref="CDD:464418"
     CDS             1..182
                     /gene="TMEM52B"
                     /coded_by="XM_009562435.2:463..1011"
                     /db_xref="GeneID:104060626"
ORIGIN      
        1 mqspvmiccv lacflwfpqv rgeegclnpe lcsgtpwdrl wyiwlvvvig gllllcglvs
       61 icmrccfhcr qtgeesgpqp yevtviafdh dstlqstits lhsvfgpaar rilavahshn
      121 aaqgtpplpa sdtppvyeea lrmsrftvak vgqkvpdldp vpeeklqasa egrdaqpalp
      181 gh
//
LOCUS       XP_009560729             117 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-aminobutyric acid receptor-associated protein-like 1 [Cuculus
            canorus].
ACCESSION   XP_009560729
VERSION     XP_009560729.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009562434.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..117
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..117
                     /product="gamma-aminobutyric acid receptor-associated
                     protein-like 1"
                     /calculated_mol_wt=13913
     Region          5..111
                     /region_name="Ubl_ATG8_GABARAP_like"
                     /note="ubiquitin-like (Ubl) domain found in
                     gamma-aminobutyric acid receptor-associated protein
                     (GABARAP) and similar proteins; sub-family of the
                     autophagy-related 8 (ATG8) protein family; cd16127"
                     /db_xref="CDD:340544"
     Site            order(28,34..35,46,49,58..59,61..63,65..67,72..73,75..77,
                     79,82..84,86..88)
                     /site_type="other"
                     /note="Atg7 interaction site [polypeptide binding]"
                     /db_xref="CDD:340544"
     Site            order(36,61,65,72..77,79,82..87,108,110..111)
                     /site_type="other"
                     /note="Atg4 interaction site [polypeptide binding]"
                     /db_xref="CDD:340544"
     CDS             1..117
                     /gene="LOC104060625"
                     /coded_by="XM_009562434.2:105..458"
                     /db_xref="GeneID:104060625"
ORIGIN      
        1 mkfqykedhp feyrkkegek irkkypdrvp vivekapkar vpdldkrkyl vpsdltvgqf
       61 yflirkrihl rpedalfffv nntipptsat mgqlyednhe edyflyvays desvygk
//
LOCUS       XP_053921063             431 aa            linear   VRT 09-MAR-2023
DEFINITION  protein eva-1 homolog C [Cuculus canorus].
ACCESSION   XP_053921063
VERSION     XP_053921063.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065088.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..431
                     /product="protein eva-1 homolog C"
                     /calculated_mol_wt=48370
     Region          50..149
                     /region_name="Gal_Rha_Lectin_EVA1_EVA1C_rpt1"
                     /note="first galactose/rhamnose binding lectin domain
                     found in Caenorhabditis elegans protein EVA-1, human
                     protein EVA-1 homolog C and similar proteins; cd22828"
                     /db_xref="CDD:438685"
     Site            order(58,126,132,134..139)
                     /site_type="other"
                     /note="putative sugar binding site [chemical binding]"
                     /db_xref="CDD:438685"
     Region          152..251
                     /region_name="Gal_Rha_Lectin_EVA1_EVA1C_rpt2"
                     /note="second galactose/rhamnose binding lectin domain
                     found in Caenorhabditis elegans protein EVA-1, human
                     protein EVA-1 homolog C and similar proteins; cd22829"
                     /db_xref="CDD:438686"
     Site            order(159,228,233,235..236,240..241)
                     /site_type="other"
                     /note="putative sugar binding site [chemical binding]"
                     /db_xref="CDD:438686"
     Region          288..427
                     /region_name="FAM176"
                     /note="FAM176 family; pfam14851"
                     /db_xref="CDD:464347"
     CDS             1..431
                     /gene="EVA1C"
                     /coded_by="XM_054065088.1:296..1591"
                     /db_xref="GeneID:104064764"
ORIGIN      
        1 msdgnagqhp prrqvgsgrl lrlllcvill csaevgalad fsgyltkllq nhtayacdge
       61 hlslhcprhs tisvqsafyg qdhhmcstqe petrmaepin cvaptslqkv ldecqnlrsc
      121 qllvnsrvfg pdlcpgttkf llvsfkckpt eyktksacen qelklhcqes kfliiysaty
      181 grwaheekni cstevervpp fdclsyvale vlskrcygkq rckiivtsre fgspclpgvt
      241 kylnvsyacv pkfiltavnp lvpdnkssik qndgvdldpk esrlpkkdgt fvshflatfa
      301 yirdhlerag llflssvcvg llftlfalvi rmscsndfqk shrkkeqlvp esdrayense
      361 neeeedssns dvqdeiagly tpsysgynsa eaaelaerie rreqiiqeiw mnsgldmtpp
      421 rnmntfyine q
//
LOCUS       XP_009565427             290 aa            linear   VRT 09-MAR-2023
DEFINITION  cilia- and flagella-associated protein 298 [Cuculus canorus].
ACCESSION   XP_009565427
VERSION     XP_009565427.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009567132.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009565427.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..290
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..290
                     /product="cilia- and flagella-associated protein 298"
                     /calculated_mol_wt=33005
     Region          189..283
                     /region_name="CFAP298"
                     /note="Cilia- and flagella-associated protein 298;
                     pfam11069"
                     /db_xref="CDD:463214"
     CDS             1..290
                     /gene="CFAP298"
                     /coded_by="XM_009567132.2:166..1038"
                     /db_xref="GeneID:104064763"
ORIGIN      
        1 mvrlhvkrgd esqflleaag saplaelapl variyngrlk vqrlcsemee laehgvclpy
       61 nmqgltdeqi eelklkdewa ekcvpsggsv fkkdvmgrrn ghapnekmqq vikktieeak
      121 alisrkqvqa nvcvnmemvk daldqlrgav mivypmglpp hdpvrmefed redlsgthag
      181 levieesqaq lwwagkelke tkllsdyvgk nekttiivki qkkgqgapgr eplisheeqk
      241 qmmlyyyrkq eelkkleedd ddsflnaewa dnhalkrqfh gvkdikwgpr
//
LOCUS       XP_053921084             518 aa            linear   VRT 09-MAR-2023
DEFINITION  TBC1 domain family member 22A isoform X1 [Cuculus canorus].
ACCESSION   XP_053921084
VERSION     XP_053921084.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065109.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..518
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..518
                     /product="TBC1 domain family member 22A isoform X1"
                     /calculated_mol_wt=59801
     Region          220..470
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     CDS             1..518
                     /gene="TBC1D22A"
                     /coded_by="XM_054065109.1:136..1692"
                     /db_xref="GeneID:104056056"
ORIGIN      
        1 masdagrkqf wkrsgakvpg siqhvygaqh ppfdpllhgt likpgskqpt tpvklkkvst
       61 fqefesntsd awdlgdddde llaiaaenln tevvmetahk viqnhsklqe qhkfqeehlq
      121 eekqvesael tsiacgdnrl vksvseghts sssdyasens smqrsqslpq asspslvsgm
      181 tdcntsvtpa ltereasrld kfkqllagpn tdleelrkls wsgipkrvrp iawkllsgyl
      241 panvdrrest lkrkrkeyfa fieqyydsrn denhqdtyrq ihidiprmsp egfklqpklm
      301 eiferilfiw airhpasgyv qgindlvtpf fvvficeyie eeevenfdvs slpeevlqni
      361 eadsywcmsk lldgiqdnyt faqpgiqkkv kmleelvsri deqvhrhldq hevkylqfaf
      421 rwmnnllmre vplrctirlw dtyqsepegf shfhlyvcaa flvrwrkeil eekdfqelli
      481 flqnlptvhw gneeisvlla eayrlkfafa dapnhykk
//
LOCUS       XP_053921091             458 aa            linear   VRT 09-MAR-2023
DEFINITION  TBC1 domain family member 22A isoform X2 [Cuculus canorus].
ACCESSION   XP_053921091
VERSION     XP_053921091.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065116.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..458
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..458
                     /product="TBC1 domain family member 22A isoform X2"
                     /calculated_mol_wt=53386
     Region          160..410
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     CDS             1..458
                     /gene="TBC1D22A"
                     /coded_by="XM_054065116.1:140..1516"
                     /db_xref="GeneID:104056056"
ORIGIN      
        1 masdagrkqf wkrsgakvpg siqhvygaqh ppfdpllhgt likpgskqpt tpvklkkvst
       61 fqefesntsd awdlgdddde llaiaaenln tevvmetahk viqnhsklqe qhkfqeehlq
      121 eekqvesael tsiacgdnrl vksvseghts ssseelrkls wsgipkrvrp iawkllsgyl
      181 panvdrrest lkrkrkeyfa fieqyydsrn denhqdtyrq ihidiprmsp egfklqpklm
      241 eiferilfiw airhpasgyv qgindlvtpf fvvficeyie eeevenfdvs slpeevlqni
      301 eadsywcmsk lldgiqdnyt faqpgiqkkv kmleelvsri deqvhrhldq hevkylqfaf
      361 rwmnnllmre vplrctirlw dtyqsepegf shfhlyvcaa flvrwrkeil eekdfqelli
      421 flqnlptvhw gneeisvlla eayrlkfafa dapnhykk
//
LOCUS       XP_053921105            1462 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: remodeling and spacing factor 1 [Cuculus
            canorus].
ACCESSION   XP_053921105
VERSION     XP_053921105.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065130.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 6 indels
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1462
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1462
                     /product="LOW QUALITY PROTEIN: remodeling and spacing
                     factor 1"
                     /calculated_mol_wt=165180
     Region          100..146
                     /region_name="WHIM1"
                     /note="WSTF, HB1, Itc1p, MBD9 motif 1; pfam15612"
                     /db_xref="CDD:464774"
     Region          <238..828
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          <460..696
                     /region_name="PTZ00108"
                     /note="DNA topoisomerase 2-like protein; Provisional"
                     /db_xref="CDD:240271"
     Region          879..923
                     /region_name="PHD_RSF1"
                     /note="PHD finger found in Remodeling and spacing factor 1
                     (Rsf-1); cd15543"
                     /db_xref="CDD:277018"
     Site            order(890..894,898,918)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277018"
     Region          900..>953
                     /region_name="BAH"
                     /note="or Bromo Adjacent Homology domain (also called ELM1
                     and BAM for Bromo Adjacent Motif). BAH domains have first
                     been described as domains found in the polybromo protein
                     and Yeast Rsc1/Rsc2 (Remodeling of the Structure of
                     Chromatin). They also occur in...; cl02608"
                     /db_xref="CDD:470629"
     CDS             1..1462
                     /gene="RSF1"
                     /coded_by="XM_054065130.1:44..4432"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 5 bases in 5 codons;
                     deleted 1 base in 1 codon"
                     /db_xref="GeneID:104064138"
ORIGIN      
        1 mataaappap sppapppagp ccpgswpnfa vvcsfleryg alldlpelpf pelervlqpp
       61 qepgeqvpke lvelhlklmr kigksvtadr wekylikicq efnstwawem ekkgylemsv
      121 ecklgilkyl cecqfddnlk fkniineeda damrlqpigr dkdglmywyq ldqehnvrmy
      181 ieeqddqdgs twkcivrnrn elaetlellk aqidpallkp nnsqqenssc espsvededt
      241 kkgeeastqe nqlkikeeke eaeeqsvele sllppvvred envvktenae ekeiiklpvi
      301 vklekpseyn eekqtikees dsfkenvkpv kaevkenkie skdlkevksc tdkivghepe
      361 rlefcvnvkt pqdsvektve eseklkndqq akiplkkrei kltddydspi kgplckcvtp
      421 tkdvlkeegk peeeafkrvp titalcpdgk vlvngevsce kitpsviqnn ksehsastke
      481 essslkerng ksgektsdsl nsvskiiktc eaeknavtvv ketgavisev ssqkvplkee
      541 sspvekdsld stttemvvee ssnsedcdkt edkvamkikk drlpppkecl emlekstnas
      601 apaelpklal sdedtskskg epeakpdsqk naevppasps pttlekpvle kkgsdtkmal
      661 peeskveeks scekqeeeie aaktepdqsd dalassleds senkkelpla kskfkyklvs
      721 egescatdnk eitserqkeg ikltirissr krkaetppee vsvgrtlrrs priskptpkv
      781 vetrdqkpdk krpeeeeekp aaaqkterke dakkqekean skvnkrskvr wtgtrtrgrw
      841 kyssneesed sgseknsdee eeeeeeeeea apadddepck kcglpnhpel illcdscdsg
      901 yhtaclrppl miipdgewfc ppcqhkllce kleeqlqdld vvlkkkerae rrkerlvyvg
      961 isieniippq epeipegqee kkkdskkpks kllerrstrt rkcisyrfde fdeaideaie
     1021 ddikeadggg igrgkdmsni tghrgkdist ileeerkenk rpqraaaarr kkrrrlndld
     1081 sdsnldeees edefkisdgs qdefviseen ldeseddpps nedsdsefca risrrhlsrp
     1141 mrqsrrlrrk tvkkkysedd ededsednss resesgytdy sdddyletrr rrsrrnqkrq
     1201 vnykedsesd gsqksvrygk elrrvhkrrl stsdsevyts knseddestk eskrlirkrr
     1261 rstddyseee gxdeedegrp vrkrlnrxet deedncenan ddaenptpan klpapqapqd
     1321 nakkhcyrie sddeddfdnv gkvespldys lvdlpstngq spgktienli xkpsektqxp
     1381 kdstasasla pngxgggqea vgpeeiedel lrvtdlvdyv gnvnsyktsi fvanlfhgss
     1441 yqrasikscf iflensplqy hf
//
LOCUS       XP_009566997             940 aa            linear   VRT 09-MAR-2023
DEFINITION  proline and serine-rich protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_009566997
VERSION     XP_009566997.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568702.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..940
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..940
                     /product="proline and serine-rich protein 1 isoform X1"
                     /calculated_mol_wt=95039
     Region          29..121
                     /region_name="DUF4476"
                     /note="Domain of unknown function (DUF4476); pfam14771"
                     /db_xref="CDD:434196"
     Region          <184..655
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..940
                     /gene="PROSER1"
                     /coded_by="XM_009568702.2:599..3421"
                     /db_xref="GeneID:104066131"
ORIGIN      
        1 mdkksfetvl deirkavlte yklkaieyvh gyfsseqvve llryfswaep qlkaikalqh
       61 kivavpaskm vnilncftfs kdklialell asnivdaqny rliedlfrin msekkrcrri
      121 leqasktgck aphamisscg mipgnpypkg kpsringifp gtpikkdtee ctnegkgiaa
      181 rilgpskpap stynphkpvp ypippcrpha tiapsaynna glvpmanvia pglpapqsya
      241 anqvvsened lssqakpsqn qafsaqanql ftphgsnpst paatpvptps pvkaishpla
      301 patplisgmn mstpvlpvfp gqvsssihts qsstptptvi kslslpgvpv tsvhsatstp
      361 ipavfsglas iptatpasqg sstpcatpap seafasaaaa apfaglpfsa tssiasannp
      421 tplssvfagl plslppnaqg isspvpstia nspattipgs lslpnpilsv lkgfltsndt
      481 slinssalps amtnelasls alanqssdpp tssvnkcytp satptsqrss tpglaifpgl
      541 pspsvansss tpptlpaqsp lttspsimpv ncgssasllh gtspsnpdqq lssvpaatsi
      601 pvlvktepms ptlsafkgps hsagpshgti glsalgrayt saasvpvslp nslnpvlsgl
      661 sslsaplnns sslssislap hgssgsiapm fnglppftsl tsnfaftgnp altppvtlpg
      721 sllatpstsa savsaphvss taavlsglaa satvsappfs lnlssavpsl fsvaqgplgs
      781 snpsfpgfpv sntpsvtpal psfpglqass avaavaplpa aatapspapv lpgfasafss
      841 nfnsalvaqa gltsglqtpg navfpgllsl pgipgfpqsa aqsslqelqh saaaqsallq
      901 ahsasaleny aaqpegfany pstsgtpfsl qtslpqsgwq
//
LOCUS       XP_053921126             830 aa            linear   VRT 09-MAR-2023
DEFINITION  proline and serine-rich protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053921126
VERSION     XP_053921126.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065151.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..830
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..830
                     /product="proline and serine-rich protein 1 isoform X2"
                     /calculated_mol_wt=82289
     Region          <74..545
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <377..722
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..830
                     /gene="PROSER1"
                     /coded_by="XM_054065151.1:193..2685"
                     /db_xref="GeneID:104066131"
ORIGIN      
        1 msekkrcrri leqasktgck aphamisscg mipgnpypkg kpsringifp gtpikkdtee
       61 ctnegkgiaa rilgpskpap stynphkpvp ypippcrpha tiapsaynna glvpmanvia
      121 pglpapqsya anqvvsened lssqakpsqn qafsaqanql ftphgsnpst paatpvptps
      181 pvkaishpla patplisgmn mstpvlpvfp gqvsssihts qsstptptvi kslslpgvpv
      241 tsvhsatstp ipavfsglas iptatpasqg sstpcatpap seafasaaaa apfaglpfsa
      301 tssiasannp tplssvfagl plslppnaqg isspvpstia nspattipgs lslpnpilsv
      361 lkgfltsndt slinssalps amtnelasls alanqssdpp tssvnkcytp satptsqrss
      421 tpglaifpgl pspsvansss tpptlpaqsp lttspsimpv ncgssasllh gtspsnpdqq
      481 lssvpaatsi pvlvktepms ptlsafkgps hsagpshgti glsalgrayt saasvpvslp
      541 nslnpvlsgl sslsaplnns sslssislap hgssgsiapm fnglppftsl tsnfaftgnp
      601 altppvtlpg sllatpstsa savsaphvss taavlsglaa satvsappfs lnlssavpsl
      661 fsvaqgplgs snpsfpgfpv sntpsvtpal psfpglqass avaavaplpa aatapspapv
      721 lpgfasafss nfnsalvaqa gltsglqtpg navfpgllsl pgipgfpqsa aqsslqelqh
      781 saaaqsallq ahsasaleny aaqpegfany pstsgtpfsl qtslpqsgwq
//
LOCUS       XP_053921140             340 aa            linear   VRT 09-MAR-2023
DEFINITION  NHL repeat-containing protein 3 [Cuculus canorus].
ACCESSION   XP_053921140
VERSION     XP_053921140.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065165.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..340
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..340
                     /product="NHL repeat-containing protein 3"
                     /calculated_mol_wt=37618
     Region          52..337
                     /region_name="NHL"
                     /note="NHL repeat unit of beta-propeller proteins;
                     cl18310"
                     /db_xref="CDD:302697"
     Region          64..102
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          108..154
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          167..206
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          214..251
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          260..305
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          311..336
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     CDS             1..340
                     /gene="NHLRC3"
                     /coded_by="XM_054065165.1:47..1069"
                     /db_xref="GeneID:104066132"
ORIGIN      
        1 mrrwrrrwla vagaamalla llallcgsqv lkafdytslw reqqqmykld igwpkipeyf
       61 ngqtfcvavd slhglvyvgq rgdnvpkvlv fseegyflhs wndtvemphg ifvlntatds
      121 svwitdvgtg kyghtvkqys psgklmqilg tpgsagssli plqfdqpaei fveesgdmyv
      181 vdgdggmnnr llklsndyke iwlagtngtg igqfkiphsv tvdlvgrvwv adrdnkriqv
      241 fdkvtgewlg ywsscfseda pysvrftady kylivaqmni nrlailaapp vgsigdcvmv
      301 ntvqladetk phlvdvdmks gavyvaeiga qqvkkyipls
//
LOCUS       XP_053921153            1249 aa            linear   VRT 09-MAR-2023
DEFINITION  plasma membrane calcium-transporting ATPase 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053921153
VERSION     XP_053921153.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065178.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1249
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1249
                     /product="plasma membrane calcium-transporting ATPase 1
                     isoform X1"
                     /calculated_mol_wt=137756
     Region          15..1064
                     /region_name="ATPase-IIB_Ca"
                     /note="plasma-membrane calcium-translocating P-type
                     ATPase; TIGR01517"
                     /db_xref="CDD:273668"
     Region          1103..1178
                     /region_name="ATP_Ca_trans_C"
                     /note="Plasma membrane calcium transporter ATPase C
                     terminal; pfam12424"
                     /db_xref="CDD:463575"
     CDS             1..1249
                     /gene="ATP2B1"
                     /coded_by="XM_054065178.1:401..4150"
                     /db_xref="GeneID:104058425"
ORIGIN      
        1 mgdmannsva ysgvknavke anhgdfgvtl aelrslmelr atdalhkiqe cygdvhgict
       61 klktspnegl sgnpadierr eavfgknfip pkkpktflql vwealqdvtl iileiaavvs
      121 lglsfyqppg gneslcgsvn vgeeeeesea gwiegaaill svvcvvlvta fndwskekqf
      181 rglqsrieqe qkftvirggq viqipvadii vgdiaqvkyg dllpadgvli qgndlkides
      241 sltgesdhvk ksldrdpmll sgthvmegsg rmvvtavgvn sqtgiiftll gaggdeeeke
      301 kekekkdkks kkqdgavenr nkakaqdgaa memqplksed ggdgdekdkk ranlpkkeks
      361 vlqgkltkla vqigkagllm saitviilvl yfvidtfwiq krpwlaectp iyiqyfvkff
      421 iigvtvlvva vpeglplavt islaysvkkm mkdnnlvrhl dacetmgnat aicsdktgtl
      481 tmnrmtvvqa yinekhykki pepeaipekt maylvtgisv ncaytskilp pekegglprh
      541 vgnktecall gllldlkrdy qdvrneipee dlykvytfns vrksmstvlk nsdgsfrifs
      601 kgaseivlkk cfkilsange pkvfrprdrd divktviepm aseglrticl afrdfpagep
      661 epewdnendi vtgltciavv giedpvrpev pdaikkcqra gitvrmvtgd nintaraial
      721 kcgilnpged flclegkdfn rrirnekgei eqeridkiwp klrvlarssp tdkhtlvkgi
      781 idstvfdqrq vvavtgdgtn dgpalkkadv gfamgiagtd vakeasdiil tddnftsivk
      841 avmwgrnvyd siskflqfql tvnvvaviva ftgacitqds plkavqmlwv nlimdtlasl
      901 alatepptea lllrkpygrn kplisrtmmk nilghafyql vvvftllfag ekifdidsgr
      961 naplhappse hytivfntfv mmqlfneina rkihgernvf egifnnaifc sivlgtfivq
     1021 iiivqfggkp fscselsieq wlwsiflgmg tllwgqlist iptsrlkflk eaghgtqkee
     1081 ipeeelaedv eeidhaerel rrgqilwfrg lnriqtqmdv vnafqsgsti qgalrrqpsi
     1141 asqhhdirvv nafrsslyeg lekpetrssi hnfmthpefr iedsephipl iddtdaedda
     1201 ptkrnstppp spnknnnavd sgihlttdmn ksatssspgs plhsletsl
//
LOCUS       XP_053921161            1249 aa            linear   VRT 09-MAR-2023
DEFINITION  plasma membrane calcium-transporting ATPase 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053921161
VERSION     XP_053921161.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065186.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1249
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1249
                     /product="plasma membrane calcium-transporting ATPase 1
                     isoform X1"
                     /calculated_mol_wt=137756
     Region          15..1064
                     /region_name="ATPase-IIB_Ca"
                     /note="plasma-membrane calcium-translocating P-type
                     ATPase; TIGR01517"
                     /db_xref="CDD:273668"
     Region          1103..1178
                     /region_name="ATP_Ca_trans_C"
                     /note="Plasma membrane calcium transporter ATPase C
                     terminal; pfam12424"
                     /db_xref="CDD:463575"
     CDS             1..1249
                     /gene="ATP2B1"
                     /coded_by="XM_054065186.1:431..4180"
                     /db_xref="GeneID:104058425"
ORIGIN      
        1 mgdmannsva ysgvknavke anhgdfgvtl aelrslmelr atdalhkiqe cygdvhgict
       61 klktspnegl sgnpadierr eavfgknfip pkkpktflql vwealqdvtl iileiaavvs
      121 lglsfyqppg gneslcgsvn vgeeeeesea gwiegaaill svvcvvlvta fndwskekqf
      181 rglqsrieqe qkftvirggq viqipvadii vgdiaqvkyg dllpadgvli qgndlkides
      241 sltgesdhvk ksldrdpmll sgthvmegsg rmvvtavgvn sqtgiiftll gaggdeeeke
      301 kekekkdkks kkqdgavenr nkakaqdgaa memqplksed ggdgdekdkk ranlpkkeks
      361 vlqgkltkla vqigkagllm saitviilvl yfvidtfwiq krpwlaectp iyiqyfvkff
      421 iigvtvlvva vpeglplavt islaysvkkm mkdnnlvrhl dacetmgnat aicsdktgtl
      481 tmnrmtvvqa yinekhykki pepeaipekt maylvtgisv ncaytskilp pekegglprh
      541 vgnktecall gllldlkrdy qdvrneipee dlykvytfns vrksmstvlk nsdgsfrifs
      601 kgaseivlkk cfkilsange pkvfrprdrd divktviepm aseglrticl afrdfpagep
      661 epewdnendi vtgltciavv giedpvrpev pdaikkcqra gitvrmvtgd nintaraial
      721 kcgilnpged flclegkdfn rrirnekgei eqeridkiwp klrvlarssp tdkhtlvkgi
      781 idstvfdqrq vvavtgdgtn dgpalkkadv gfamgiagtd vakeasdiil tddnftsivk
      841 avmwgrnvyd siskflqfql tvnvvaviva ftgacitqds plkavqmlwv nlimdtlasl
      901 alatepptea lllrkpygrn kplisrtmmk nilghafyql vvvftllfag ekifdidsgr
      961 naplhappse hytivfntfv mmqlfneina rkihgernvf egifnnaifc sivlgtfivq
     1021 iiivqfggkp fscselsieq wlwsiflgmg tllwgqlist iptsrlkflk eaghgtqkee
     1081 ipeeelaedv eeidhaerel rrgqilwfrg lnriqtqmdv vnafqsgsti qgalrrqpsi
     1141 asqhhdirvv nafrsslyeg lekpetrssi hnfmthpefr iedsephipl iddtdaedda
     1201 ptkrnstppp spnknnnavd sgihlttdmn ksatssspgs plhsletsl
//
LOCUS       XP_053921167            1249 aa            linear   VRT 09-MAR-2023
DEFINITION  plasma membrane calcium-transporting ATPase 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053921167
VERSION     XP_053921167.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065192.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1249
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1249
                     /product="plasma membrane calcium-transporting ATPase 1
                     isoform X1"
                     /calculated_mol_wt=137756
     Region          15..1064
                     /region_name="ATPase-IIB_Ca"
                     /note="plasma-membrane calcium-translocating P-type
                     ATPase; TIGR01517"
                     /db_xref="CDD:273668"
     Region          1103..1178
                     /region_name="ATP_Ca_trans_C"
                     /note="Plasma membrane calcium transporter ATPase C
                     terminal; pfam12424"
                     /db_xref="CDD:463575"
     CDS             1..1249
                     /gene="ATP2B1"
                     /coded_by="XM_054065192.1:327..4076"
                     /db_xref="GeneID:104058425"
ORIGIN      
        1 mgdmannsva ysgvknavke anhgdfgvtl aelrslmelr atdalhkiqe cygdvhgict
       61 klktspnegl sgnpadierr eavfgknfip pkkpktflql vwealqdvtl iileiaavvs
      121 lglsfyqppg gneslcgsvn vgeeeeesea gwiegaaill svvcvvlvta fndwskekqf
      181 rglqsrieqe qkftvirggq viqipvadii vgdiaqvkyg dllpadgvli qgndlkides
      241 sltgesdhvk ksldrdpmll sgthvmegsg rmvvtavgvn sqtgiiftll gaggdeeeke
      301 kekekkdkks kkqdgavenr nkakaqdgaa memqplksed ggdgdekdkk ranlpkkeks
      361 vlqgkltkla vqigkagllm saitviilvl yfvidtfwiq krpwlaectp iyiqyfvkff
      421 iigvtvlvva vpeglplavt islaysvkkm mkdnnlvrhl dacetmgnat aicsdktgtl
      481 tmnrmtvvqa yinekhykki pepeaipekt maylvtgisv ncaytskilp pekegglprh
      541 vgnktecall gllldlkrdy qdvrneipee dlykvytfns vrksmstvlk nsdgsfrifs
      601 kgaseivlkk cfkilsange pkvfrprdrd divktviepm aseglrticl afrdfpagep
      661 epewdnendi vtgltciavv giedpvrpev pdaikkcqra gitvrmvtgd nintaraial
      721 kcgilnpged flclegkdfn rrirnekgei eqeridkiwp klrvlarssp tdkhtlvkgi
      781 idstvfdqrq vvavtgdgtn dgpalkkadv gfamgiagtd vakeasdiil tddnftsivk
      841 avmwgrnvyd siskflqfql tvnvvaviva ftgacitqds plkavqmlwv nlimdtlasl
      901 alatepptea lllrkpygrn kplisrtmmk nilghafyql vvvftllfag ekifdidsgr
      961 naplhappse hytivfntfv mmqlfneina rkihgernvf egifnnaifc sivlgtfivq
     1021 iiivqfggkp fscselsieq wlwsiflgmg tllwgqlist iptsrlkflk eaghgtqkee
     1081 ipeeelaedv eeidhaerel rrgqilwfrg lnriqtqmdv vnafqsgsti qgalrrqpsi
     1141 asqhhdirvv nafrsslyeg lekpetrssi hnfmthpefr iedsephipl iddtdaedda
     1201 ptkrnstppp spnknnnavd sgihlttdmn ksatssspgs plhsletsl
//
LOCUS       XP_053921177            1249 aa            linear   VRT 09-MAR-2023
DEFINITION  plasma membrane calcium-transporting ATPase 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053921177
VERSION     XP_053921177.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065202.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1249
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1249
                     /product="plasma membrane calcium-transporting ATPase 1
                     isoform X1"
                     /calculated_mol_wt=137756
     Region          15..1064
                     /region_name="ATPase-IIB_Ca"
                     /note="plasma-membrane calcium-translocating P-type
                     ATPase; TIGR01517"
                     /db_xref="CDD:273668"
     Region          1103..1178
                     /region_name="ATP_Ca_trans_C"
                     /note="Plasma membrane calcium transporter ATPase C
                     terminal; pfam12424"
                     /db_xref="CDD:463575"
     CDS             1..1249
                     /gene="ATP2B1"
                     /coded_by="XM_054065202.1:336..4085"
                     /db_xref="GeneID:104058425"
ORIGIN      
        1 mgdmannsva ysgvknavke anhgdfgvtl aelrslmelr atdalhkiqe cygdvhgict
       61 klktspnegl sgnpadierr eavfgknfip pkkpktflql vwealqdvtl iileiaavvs
      121 lglsfyqppg gneslcgsvn vgeeeeesea gwiegaaill svvcvvlvta fndwskekqf
      181 rglqsrieqe qkftvirggq viqipvadii vgdiaqvkyg dllpadgvli qgndlkides
      241 sltgesdhvk ksldrdpmll sgthvmegsg rmvvtavgvn sqtgiiftll gaggdeeeke
      301 kekekkdkks kkqdgavenr nkakaqdgaa memqplksed ggdgdekdkk ranlpkkeks
      361 vlqgkltkla vqigkagllm saitviilvl yfvidtfwiq krpwlaectp iyiqyfvkff
      421 iigvtvlvva vpeglplavt islaysvkkm mkdnnlvrhl dacetmgnat aicsdktgtl
      481 tmnrmtvvqa yinekhykki pepeaipekt maylvtgisv ncaytskilp pekegglprh
      541 vgnktecall gllldlkrdy qdvrneipee dlykvytfns vrksmstvlk nsdgsfrifs
      601 kgaseivlkk cfkilsange pkvfrprdrd divktviepm aseglrticl afrdfpagep
      661 epewdnendi vtgltciavv giedpvrpev pdaikkcqra gitvrmvtgd nintaraial
      721 kcgilnpged flclegkdfn rrirnekgei eqeridkiwp klrvlarssp tdkhtlvkgi
      781 idstvfdqrq vvavtgdgtn dgpalkkadv gfamgiagtd vakeasdiil tddnftsivk
      841 avmwgrnvyd siskflqfql tvnvvaviva ftgacitqds plkavqmlwv nlimdtlasl
      901 alatepptea lllrkpygrn kplisrtmmk nilghafyql vvvftllfag ekifdidsgr
      961 naplhappse hytivfntfv mmqlfneina rkihgernvf egifnnaifc sivlgtfivq
     1021 iiivqfggkp fscselsieq wlwsiflgmg tllwgqlist iptsrlkflk eaghgtqkee
     1081 ipeeelaedv eeidhaerel rrgqilwfrg lnriqtqmdv vnafqsgsti qgalrrqpsi
     1141 asqhhdirvv nafrsslyeg lekpetrssi hnfmthpefr iedsephipl iddtdaedda
     1201 ptkrnstppp spnknnnavd sgihlttdmn ksatssspgs plhsletsl
//
LOCUS       XP_053921186            1249 aa            linear   VRT 09-MAR-2023
DEFINITION  plasma membrane calcium-transporting ATPase 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053921186
VERSION     XP_053921186.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065211.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1249
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1249
                     /product="plasma membrane calcium-transporting ATPase 1
                     isoform X1"
                     /calculated_mol_wt=137756
     Region          15..1064
                     /region_name="ATPase-IIB_Ca"
                     /note="plasma-membrane calcium-translocating P-type
                     ATPase; TIGR01517"
                     /db_xref="CDD:273668"
     Region          1103..1178
                     /region_name="ATP_Ca_trans_C"
                     /note="Plasma membrane calcium transporter ATPase C
                     terminal; pfam12424"
                     /db_xref="CDD:463575"
     CDS             1..1249
                     /gene="ATP2B1"
                     /coded_by="XM_054065211.1:343..4092"
                     /db_xref="GeneID:104058425"
ORIGIN      
        1 mgdmannsva ysgvknavke anhgdfgvtl aelrslmelr atdalhkiqe cygdvhgict
       61 klktspnegl sgnpadierr eavfgknfip pkkpktflql vwealqdvtl iileiaavvs
      121 lglsfyqppg gneslcgsvn vgeeeeesea gwiegaaill svvcvvlvta fndwskekqf
      181 rglqsrieqe qkftvirggq viqipvadii vgdiaqvkyg dllpadgvli qgndlkides
      241 sltgesdhvk ksldrdpmll sgthvmegsg rmvvtavgvn sqtgiiftll gaggdeeeke
      301 kekekkdkks kkqdgavenr nkakaqdgaa memqplksed ggdgdekdkk ranlpkkeks
      361 vlqgkltkla vqigkagllm saitviilvl yfvidtfwiq krpwlaectp iyiqyfvkff
      421 iigvtvlvva vpeglplavt islaysvkkm mkdnnlvrhl dacetmgnat aicsdktgtl
      481 tmnrmtvvqa yinekhykki pepeaipekt maylvtgisv ncaytskilp pekegglprh
      541 vgnktecall gllldlkrdy qdvrneipee dlykvytfns vrksmstvlk nsdgsfrifs
      601 kgaseivlkk cfkilsange pkvfrprdrd divktviepm aseglrticl afrdfpagep
      661 epewdnendi vtgltciavv giedpvrpev pdaikkcqra gitvrmvtgd nintaraial
      721 kcgilnpged flclegkdfn rrirnekgei eqeridkiwp klrvlarssp tdkhtlvkgi
      781 idstvfdqrq vvavtgdgtn dgpalkkadv gfamgiagtd vakeasdiil tddnftsivk
      841 avmwgrnvyd siskflqfql tvnvvaviva ftgacitqds plkavqmlwv nlimdtlasl
      901 alatepptea lllrkpygrn kplisrtmmk nilghafyql vvvftllfag ekifdidsgr
      961 naplhappse hytivfntfv mmqlfneina rkihgernvf egifnnaifc sivlgtfivq
     1021 iiivqfggkp fscselsieq wlwsiflgmg tllwgqlist iptsrlkflk eaghgtqkee
     1081 ipeeelaedv eeidhaerel rrgqilwfrg lnriqtqmdv vnafqsgsti qgalrrqpsi
     1141 asqhhdirvv nafrsslyeg lekpetrssi hnfmthpefr iedsephipl iddtdaedda
     1201 ptkrnstppp spnknnnavd sgihlttdmn ksatssspgs plhsletsl
//
LOCUS       XP_053921193            1249 aa            linear   VRT 09-MAR-2023
DEFINITION  plasma membrane calcium-transporting ATPase 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053921193
VERSION     XP_053921193.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065218.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1249
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1249
                     /product="plasma membrane calcium-transporting ATPase 1
                     isoform X1"
                     /calculated_mol_wt=137756
     Region          15..1064
                     /region_name="ATPase-IIB_Ca"
                     /note="plasma-membrane calcium-translocating P-type
                     ATPase; TIGR01517"
                     /db_xref="CDD:273668"
     Region          1103..1178
                     /region_name="ATP_Ca_trans_C"
                     /note="Plasma membrane calcium transporter ATPase C
                     terminal; pfam12424"
                     /db_xref="CDD:463575"
     CDS             1..1249
                     /gene="ATP2B1"
                     /coded_by="XM_054065218.1:355..4104"
                     /db_xref="GeneID:104058425"
ORIGIN      
        1 mgdmannsva ysgvknavke anhgdfgvtl aelrslmelr atdalhkiqe cygdvhgict
       61 klktspnegl sgnpadierr eavfgknfip pkkpktflql vwealqdvtl iileiaavvs
      121 lglsfyqppg gneslcgsvn vgeeeeesea gwiegaaill svvcvvlvta fndwskekqf
      181 rglqsrieqe qkftvirggq viqipvadii vgdiaqvkyg dllpadgvli qgndlkides
      241 sltgesdhvk ksldrdpmll sgthvmegsg rmvvtavgvn sqtgiiftll gaggdeeeke
      301 kekekkdkks kkqdgavenr nkakaqdgaa memqplksed ggdgdekdkk ranlpkkeks
      361 vlqgkltkla vqigkagllm saitviilvl yfvidtfwiq krpwlaectp iyiqyfvkff
      421 iigvtvlvva vpeglplavt islaysvkkm mkdnnlvrhl dacetmgnat aicsdktgtl
      481 tmnrmtvvqa yinekhykki pepeaipekt maylvtgisv ncaytskilp pekegglprh
      541 vgnktecall gllldlkrdy qdvrneipee dlykvytfns vrksmstvlk nsdgsfrifs
      601 kgaseivlkk cfkilsange pkvfrprdrd divktviepm aseglrticl afrdfpagep
      661 epewdnendi vtgltciavv giedpvrpev pdaikkcqra gitvrmvtgd nintaraial
      721 kcgilnpged flclegkdfn rrirnekgei eqeridkiwp klrvlarssp tdkhtlvkgi
      781 idstvfdqrq vvavtgdgtn dgpalkkadv gfamgiagtd vakeasdiil tddnftsivk
      841 avmwgrnvyd siskflqfql tvnvvaviva ftgacitqds plkavqmlwv nlimdtlasl
      901 alatepptea lllrkpygrn kplisrtmmk nilghafyql vvvftllfag ekifdidsgr
      961 naplhappse hytivfntfv mmqlfneina rkihgernvf egifnnaifc sivlgtfivq
     1021 iiivqfggkp fscselsieq wlwsiflgmg tllwgqlist iptsrlkflk eaghgtqkee
     1081 ipeeelaedv eeidhaerel rrgqilwfrg lnriqtqmdv vnafqsgsti qgalrrqpsi
     1141 asqhhdirvv nafrsslyeg lekpetrssi hnfmthpefr iedsephipl iddtdaedda
     1201 ptkrnstppp spnknnnavd sgihlttdmn ksatssspgs plhsletsl
//
LOCUS       XP_053921203            1249 aa            linear   VRT 09-MAR-2023
DEFINITION  plasma membrane calcium-transporting ATPase 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053921203
VERSION     XP_053921203.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065228.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1249
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1249
                     /product="plasma membrane calcium-transporting ATPase 1
                     isoform X1"
                     /calculated_mol_wt=137756
     Region          15..1064
                     /region_name="ATPase-IIB_Ca"
                     /note="plasma-membrane calcium-translocating P-type
                     ATPase; TIGR01517"
                     /db_xref="CDD:273668"
     Region          1103..1178
                     /region_name="ATP_Ca_trans_C"
                     /note="Plasma membrane calcium transporter ATPase C
                     terminal; pfam12424"
                     /db_xref="CDD:463575"
     CDS             1..1249
                     /gene="ATP2B1"
                     /coded_by="XM_054065228.1:325..4074"
                     /db_xref="GeneID:104058425"
ORIGIN      
        1 mgdmannsva ysgvknavke anhgdfgvtl aelrslmelr atdalhkiqe cygdvhgict
       61 klktspnegl sgnpadierr eavfgknfip pkkpktflql vwealqdvtl iileiaavvs
      121 lglsfyqppg gneslcgsvn vgeeeeesea gwiegaaill svvcvvlvta fndwskekqf
      181 rglqsrieqe qkftvirggq viqipvadii vgdiaqvkyg dllpadgvli qgndlkides
      241 sltgesdhvk ksldrdpmll sgthvmegsg rmvvtavgvn sqtgiiftll gaggdeeeke
      301 kekekkdkks kkqdgavenr nkakaqdgaa memqplksed ggdgdekdkk ranlpkkeks
      361 vlqgkltkla vqigkagllm saitviilvl yfvidtfwiq krpwlaectp iyiqyfvkff
      421 iigvtvlvva vpeglplavt islaysvkkm mkdnnlvrhl dacetmgnat aicsdktgtl
      481 tmnrmtvvqa yinekhykki pepeaipekt maylvtgisv ncaytskilp pekegglprh
      541 vgnktecall gllldlkrdy qdvrneipee dlykvytfns vrksmstvlk nsdgsfrifs
      601 kgaseivlkk cfkilsange pkvfrprdrd divktviepm aseglrticl afrdfpagep
      661 epewdnendi vtgltciavv giedpvrpev pdaikkcqra gitvrmvtgd nintaraial
      721 kcgilnpged flclegkdfn rrirnekgei eqeridkiwp klrvlarssp tdkhtlvkgi
      781 idstvfdqrq vvavtgdgtn dgpalkkadv gfamgiagtd vakeasdiil tddnftsivk
      841 avmwgrnvyd siskflqfql tvnvvaviva ftgacitqds plkavqmlwv nlimdtlasl
      901 alatepptea lllrkpygrn kplisrtmmk nilghafyql vvvftllfag ekifdidsgr
      961 naplhappse hytivfntfv mmqlfneina rkihgernvf egifnnaifc sivlgtfivq
     1021 iiivqfggkp fscselsieq wlwsiflgmg tllwgqlist iptsrlkflk eaghgtqkee
     1081 ipeeelaedv eeidhaerel rrgqilwfrg lnriqtqmdv vnafqsgsti qgalrrqpsi
     1141 asqhhdirvv nafrsslyeg lekpetrssi hnfmthpefr iedsephipl iddtdaedda
     1201 ptkrnstppp spnknnnavd sgihlttdmn ksatssspgs plhsletsl
//
LOCUS       XP_053921210            1220 aa            linear   VRT 09-MAR-2023
DEFINITION  plasma membrane calcium-transporting ATPase 1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053921210
VERSION     XP_053921210.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065235.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1220
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1220
                     /product="plasma membrane calcium-transporting ATPase 1
                     isoform X2"
                     /calculated_mol_wt=134622
     Region          15..1064
                     /region_name="ATPase-IIB_Ca"
                     /note="plasma-membrane calcium-translocating P-type
                     ATPase; TIGR01517"
                     /db_xref="CDD:273668"
     Region          1103..1149
                     /region_name="ATP_Ca_trans_C"
                     /note="Plasma membrane calcium transporter ATPase C
                     terminal; pfam12424"
                     /db_xref="CDD:463575"
     CDS             1..1220
                     /gene="ATP2B1"
                     /coded_by="XM_054065235.1:400..4062"
                     /db_xref="GeneID:104058425"
ORIGIN      
        1 mgdmannsva ysgvknavke anhgdfgvtl aelrslmelr atdalhkiqe cygdvhgict
       61 klktspnegl sgnpadierr eavfgknfip pkkpktflql vwealqdvtl iileiaavvs
      121 lglsfyqppg gneslcgsvn vgeeeeesea gwiegaaill svvcvvlvta fndwskekqf
      181 rglqsrieqe qkftvirggq viqipvadii vgdiaqvkyg dllpadgvli qgndlkides
      241 sltgesdhvk ksldrdpmll sgthvmegsg rmvvtavgvn sqtgiiftll gaggdeeeke
      301 kekekkdkks kkqdgavenr nkakaqdgaa memqplksed ggdgdekdkk ranlpkkeks
      361 vlqgkltkla vqigkagllm saitviilvl yfvidtfwiq krpwlaectp iyiqyfvkff
      421 iigvtvlvva vpeglplavt islaysvkkm mkdnnlvrhl dacetmgnat aicsdktgtl
      481 tmnrmtvvqa yinekhykki pepeaipekt maylvtgisv ncaytskilp pekegglprh
      541 vgnktecall gllldlkrdy qdvrneipee dlykvytfns vrksmstvlk nsdgsfrifs
      601 kgaseivlkk cfkilsange pkvfrprdrd divktviepm aseglrticl afrdfpagep
      661 epewdnendi vtgltciavv giedpvrpev pdaikkcqra gitvrmvtgd nintaraial
      721 kcgilnpged flclegkdfn rrirnekgei eqeridkiwp klrvlarssp tdkhtlvkgi
      781 idstvfdqrq vvavtgdgtn dgpalkkadv gfamgiagtd vakeasdiil tddnftsivk
      841 avmwgrnvyd siskflqfql tvnvvaviva ftgacitqds plkavqmlwv nlimdtlasl
      901 alatepptea lllrkpygrn kplisrtmmk nilghafyql vvvftllfag ekifdidsgr
      961 naplhappse hytivfntfv mmqlfneina rkihgernvf egifnnaifc sivlgtfivq
     1021 iiivqfggkp fscselsieq wlwsiflgmg tllwgqlist iptsrlkflk eaghgtqkee
     1081 ipeeelaedv eeidhaerel rrgqilwfrg lnriqtqirv vnafrsslye glekpetrss
     1141 ihnfmthpef riedsephip liddtdaedd aptkrnstpp pspnknnnav dsgihlttdm
     1201 nksatssspg splhsletsl
//
LOCUS       XP_053921218            1171 aa            linear   VRT 09-MAR-2023
DEFINITION  plasma membrane calcium-transporting ATPase 1 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053921218
VERSION     XP_053921218.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065243.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1171
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1171
                     /product="plasma membrane calcium-transporting ATPase 1
                     isoform X3"
                     /calculated_mol_wt=129055
     Region          15..1064
                     /region_name="ATPase-IIB_Ca"
                     /note="plasma-membrane calcium-translocating P-type
                     ATPase; TIGR01517"
                     /db_xref="CDD:273668"
     Region          1103..>1127
                     /region_name="ATP_Ca_trans_C"
                     /note="Plasma membrane calcium transporter ATPase C
                     terminal; pfam12424"
                     /db_xref="CDD:463575"
     CDS             1..1171
                     /gene="ATP2B1"
                     /coded_by="XM_054065243.1:402..3917"
                     /db_xref="GeneID:104058425"
ORIGIN      
        1 mgdmannsva ysgvknavke anhgdfgvtl aelrslmelr atdalhkiqe cygdvhgict
       61 klktspnegl sgnpadierr eavfgknfip pkkpktflql vwealqdvtl iileiaavvs
      121 lglsfyqppg gneslcgsvn vgeeeeesea gwiegaaill svvcvvlvta fndwskekqf
      181 rglqsrieqe qkftvirggq viqipvadii vgdiaqvkyg dllpadgvli qgndlkides
      241 sltgesdhvk ksldrdpmll sgthvmegsg rmvvtavgvn sqtgiiftll gaggdeeeke
      301 kekekkdkks kkqdgavenr nkakaqdgaa memqplksed ggdgdekdkk ranlpkkeks
      361 vlqgkltkla vqigkagllm saitviilvl yfvidtfwiq krpwlaectp iyiqyfvkff
      421 iigvtvlvva vpeglplavt islaysvkkm mkdnnlvrhl dacetmgnat aicsdktgtl
      481 tmnrmtvvqa yinekhykki pepeaipekt maylvtgisv ncaytskilp pekegglprh
      541 vgnktecall gllldlkrdy qdvrneipee dlykvytfns vrksmstvlk nsdgsfrifs
      601 kgaseivlkk cfkilsange pkvfrprdrd divktviepm aseglrticl afrdfpagep
      661 epewdnendi vtgltciavv giedpvrpev pdaikkcqra gitvrmvtgd nintaraial
      721 kcgilnpged flclegkdfn rrirnekgei eqeridkiwp klrvlarssp tdkhtlvkgi
      781 idstvfdqrq vvavtgdgtn dgpalkkadv gfamgiagtd vakeasdiil tddnftsivk
      841 avmwgrnvyd siskflqfql tvnvvaviva ftgacitqds plkavqmlwv nlimdtlasl
      901 alatepptea lllrkpygrn kplisrtmmk nilghafyql vvvftllfag ekifdidsgr
      961 naplhappse hytivfntfv mmqlfneina rkihgernvf egifnnaifc sivlgtfivq
     1021 iiivqfggkp fscselsieq wlwsiflgmg tllwgqlist iptsrlkflk eaghgtqkee
     1081 ipeeelaedv eeidhaerel rrgqilwfrg lnriqtqmdv vnafqsgsti qgalrrqpsi
     1141 asqhhdvtni stpthvvfss ttasttvgse w
//
LOCUS       XP_009558236             583 aa            linear   VRT 09-MAR-2023
DEFINITION  polypeptide N-acetylgalactosaminyltransferase 4 [Cuculus canorus].
ACCESSION   XP_009558236
VERSION     XP_009558236.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009559941.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..583
                     /product="polypeptide N-acetylgalactosaminyltransferase 4"
                     /calculated_mol_wt=67027
     Region          143..437
                     /region_name="pp-GalNAc-T"
                     /note="pp-GalNAc-T initiates the formation of mucin-type
                     O-linked glycans; cd02510"
                     /db_xref="CDD:133004"
     Site            order(147..149,151,180,209,212,216,232..234,316..317,
                     339..340,342,367,370,375)
                     /site_type="active"
                     /note="ligand binding site [active]"
                     /db_xref="CDD:133004"
     Site            order(232,234,367)
                     /site_type="active"
                     /note="Mn binding site [active]"
                     /db_xref="CDD:133004"
     Region          447..582
                     /region_name="beta-trefoil_Ricin-like"
                     /note="ricin B-type lectin domain, beta-trefoil fold;
                     cl49609"
                     /db_xref="CDD:483949"
     Site            order(464..466,478,480,488..489)
                     /site_type="other"
                     /note="sugar binding site [chemical binding]"
                     /db_xref="CDD:467293"
     Site            order(510..511,519,521,533..534)
                     /site_type="other"
                     /note="sugar binding site [chemical binding]"
                     /db_xref="CDD:467293"
     Site            order(554..556,566,568,576..577)
                     /site_type="other"
                     /note="sugar binding site [chemical binding]"
                     /db_xref="CDD:467293"
     CDS             1..583
                     /gene="GALNT4"
                     /coded_by="XM_009559941.2:122..1873"
                     /db_xref="GeneID:104058426"
ORIGIN      
        1 mrirlarrwt wvrkscvvlg fltvaylvve lsvsslgasl agesstkgkr errfsdgaed
       61 avdlarpvyd ksppdpsapg ewgkpfrpql speekkqeee liekyainif lsdkislhrh
      121 iednrlrgck tktynyrrlp ttsviiafyn eawstllrti hsvletspsv llkeiilvdd
      181 lsdkvylkae lekyisslqr irlirtnkre glvrarliga tfatgdvltf ldchcecvsg
      241 wleplleria enetvivcpv idtidwntfe yymqttepmi ggfdwrltfq whsvpkherl
      301 rrksetdpir sptmagglfa vskkyfeylg tydtgmdvwg genlelsfrv wqcggmleih
      361 pcshvghvfp krapyarpnf lqntaraaev wmdeykehfy nrnpsarken ygdiserkil
      421 rerlkcksfk wylknifael hvpedrpgwh gairsagits ecldyvlpeh nptgshlslf
      481 gchgqggnqf feytsnkeir fnsvtelcae vpqnedfigm rscpkdgspi peiivwhfke
      541 dgtiyhphsg kcltayrtte gradvemrtc nvadknqiwk fek
//
LOCUS       XP_053921240             522 aa            linear   VRT 09-MAR-2023
DEFINITION  POC1 centriolar protein homolog B isoform X1 [Cuculus canorus].
ACCESSION   XP_053921240
VERSION     XP_053921240.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065265.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..522
                     /product="POC1 centriolar protein homolog B isoform X1"
                     /calculated_mol_wt=57822
     Region          2..351
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          117..154
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          160..196
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          201..236
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          244..279
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          285..321
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          327..365
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..522
                     /gene="POC1B"
                     /coded_by="XM_054065265.1:13..1581"
                     /db_xref="GeneID:104058427"
ORIGIN      
        1 mtsalvrqrl qragferpel pgapgpamas aredpvlirp lrghraavtg vafhedatgl
       61 aktlvllasa qaksplkpnn cslllistts sldtflmmwk lktrcraykf vghaeavtsv
      121 qfspvgqlla sasqdwtvrl wipcihgess vlkghtasvr svsfshdghf lvsasndksv
      181 kiwsvrrqcl yfslfehthw vrcakfspdg rliascsedk svkiwdtrnk tcidsfldyg
      241 gfanfvdfnp sgtciasass nrtvklwdir mnkllqhynv hragvncvsf hpsgnylita
      301 stdgtlkild ilegrliytl hghkgsvlsv afskggekfa sggadaqvll wktnfdsfdy
      361 kevlkhhmrr rhiddpphll diyprsphlh ceklesvein ptfdvadtrt hdppvieins
      421 slsfntqddv ssedlqyssa svlatsskrk senesesavh nvdkqtgisp slgsaleqiv
      481 eqldvltlti sileqrltlt edklkeclen qqklllqgrq ee
//
LOCUS       XP_053921251             495 aa            linear   VRT 09-MAR-2023
DEFINITION  POC1 centriolar protein homolog B isoform X2 [Cuculus canorus].
ACCESSION   XP_053921251
VERSION     XP_053921251.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065276.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..495
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..495
                     /product="POC1 centriolar protein homolog B isoform X2"
                     /calculated_mol_wt=55015
     Region          2..324
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          48..85
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          90..127
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          133..169
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          174..209
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          217..252
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          258..294
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          300..338
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..495
                     /gene="POC1B"
                     /coded_by="XM_054065276.1:13..1500"
                     /db_xref="GeneID:104058427"
ORIGIN      
        1 mtsalvrqrl qragferpel pgapgpamas aredpvlirp lrghraavtg vafhedatgl
       61 atssldtflm mwklktrcra ykfvghaeav tsvqfspvgq llasasqdwt vrlwipcihg
      121 essvlkghta svrsvsfshd ghflvsasnd ksvkiwsvrr qclyfslfeh thwvrcakfs
      181 pdgrliascs edksvkiwdt rnktcidsfl dyggfanfvd fnpsgtcias assnrtvklw
      241 dirmnkllqh ynvhragvnc vsfhpsgnyl itastdgtlk ildilegrli ytlhghkgsv
      301 lsvafskgge kfasggadaq vllwktnfds fdykevlkhh mrrrhiddpp hlldiyprsp
      361 hlhceklesv einptfdvad trthdppvie insslsfntq ddvssedlqy ssasvlatss
      421 krkseneses avhnvdkqtg ispslgsale qiveqldvlt ltisileqrl tltedklkec
      481 lenqqklllq grqee
//
LOCUS       XP_053921260             490 aa            linear   VRT 09-MAR-2023
DEFINITION  POC1 centriolar protein homolog B isoform X3 [Cuculus canorus].
ACCESSION   XP_053921260
VERSION     XP_053921260.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065285.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..490
                     /product="POC1 centriolar protein homolog B isoform X3"
                     /calculated_mol_wt=53998
     Region          2..351
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          117..154
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          160..196
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          201..236
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          244..279
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          285..321
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          327..365
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..490
                     /gene="POC1B"
                     /coded_by="XM_054065285.1:14..1486"
                     /db_xref="GeneID:104058427"
ORIGIN      
        1 mtsalvrqrl qragferpel pgapgpamas aredpvlirp lrghraavtg vafhedatgl
       61 aktlvllasa qaksplkpnn cslllistts sldtflmmwk lktrcraykf vghaeavtsv
      121 qfspvgqlla sasqdwtvrl wipcihgess vlkghtasvr svsfshdghf lvsasndksv
      181 kiwsvrrqcl yfslfehthw vrcakfspdg rliascsedk svkiwdtrnk tcidsfldyg
      241 gfanfvdfnp sgtciasass nrtvklwdir mnkllqhynv hragvncvsf hpsgnylita
      301 stdgtlkild ilegrliytl hghkgsvlsv afskggekfa sggadaqvll wktnfdsfdy
      361 kevlkhhmrr rhiddpphll diyprsphlh ceklesvein ptfdvadtrt hdppvieins
      421 slsfntqddv ssedlqyssa svlatsskrk senesesavh nvdkqtgisp slgsaleqiv
      481 eqldvltlsl
//
LOCUS       XP_053921263             471 aa            linear   VRT 09-MAR-2023
DEFINITION  POC1 centriolar protein homolog B isoform X4 [Cuculus canorus].
ACCESSION   XP_053921263
VERSION     XP_053921263.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065288.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..471
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..471
                     /product="POC1 centriolar protein homolog B isoform X4"
                     /calculated_mol_wt=51548
     Region          2..348
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          117..154
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          160..196
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          201..236
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          244..279
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          285..321
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          327..372
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..471
                     /gene="POC1B"
                     /coded_by="XM_054065288.1:13..1428"
                     /db_xref="GeneID:104058427"
ORIGIN      
        1 mtsalvrqrl qragferpel pgapgpamas aredpvlirp lrghraavtg vafhedatgl
       61 aktlvllasa qaksplkpnn cslllistts sldtflmmwk lktrcraykf vghaeavtsv
      121 qfspvgqlla sasqdwtvrl wipcihgess vlkghtasvr svsfshdghf lvsasndksv
      181 kiwsvrrqcl yfslfehthw vrcakfspdg rliascsedk svkiwdtrnk tcidsfldyg
      241 gfanfvdfnp sgtciasass nrtvklwdir mnkllqhynv hragvncvsf hpsgnylita
      301 stdgtlkild ilegrliytl hghkgsvlsv afskggekfa sggadaqinp tfdvadtrth
      361 dppvieinss lsfntqddvs sedlqyssas vlatsskrks enesesavhn vdkqtgisps
      421 lgsaleqive qldvltltis ileqrltlte dklkeclenq qklllqgrqe e
//
LOCUS       XP_053921272             426 aa            linear   VRT 09-MAR-2023
DEFINITION  POC1 centriolar protein homolog B isoform X5 [Cuculus canorus].
ACCESSION   XP_053921272
VERSION     XP_053921272.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065297.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..426
                     /product="POC1 centriolar protein homolog B isoform X5"
                     /calculated_mol_wt=47694
     Region          <3..255
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          21..58
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          64..100
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          105..140
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          148..183
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          189..225
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          231..269
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..426
                     /gene="POC1B"
                     /coded_by="XM_054065297.1:132..1412"
                     /db_xref="GeneID:104058427"
ORIGIN      
        1 mmwklktrcr aykfvghaea vtsvqfspvg qllasasqdw tvrlwipcih gessvlkght
       61 asvrsvsfsh dghflvsasn dksvkiwsvr rqclyfslfe hthwvrcakf spdgrliasc
      121 sedksvkiwd trnktcidsf ldyggfanfv dfnpsgtcia sassnrtvkl wdirmnkllq
      181 hynvhragvn cvsfhpsgny litastdgtl kildilegrl iytlhghkgs vlsvafskgg
      241 ekfasggada qvllwktnfd sfdykevlkh hmrrrhiddp phlldiyprs phlhcekles
      301 veinptfdva dtrthdppvi einsslsfnt qddvssedlq yssasvlats skrksenese
      361 savhnvdkqt gispslgsal eqiveqldvl tltisileqr ltltedklke clenqqklll
      421 qgrqee
//
LOCUS       XP_053921335             711 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128852026 isoform X1 [Cuculus canorus].
ACCESSION   XP_053921335
VERSION     XP_053921335.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065360.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..711
                     /product="uncharacterized protein LOC128852026 isoform X1"
                     /calculated_mol_wt=78697
     CDS             1..711
                     /gene="LOC128852026"
                     /coded_by="XM_054065360.1:2649..4784"
                     /db_xref="GeneID:128852026"
ORIGIN      
        1 mdpcfpgdae hlpasekwet ilkknpghll ttakqkkkrk ryrkmkdnht eitkqkldka
       61 ahhpipdnqe tshseedyse eekskslcaf sespkepvta ceeqpggdde slkeaavlsr
      121 ekspiavsea tvrsssalen elpvasdssh lidveafsne nlnrnafnde etnqrhkenl
      181 cqnsflkgnn densiqeteg acedynmlrl smenklesyq itneldpeak llsfnseeke
      241 isqcnnsnih dnvpdnkted kgtfkgeeni ssdwssknll tedlqlgfdt qvsswsedkf
      301 vgeqrpwemn epeqtctnss tplncclsnq gllkenhpvt vteeadnmls nglsasapce
      361 vhsdslvear agfmqcssev nvpingaapi iskgkrcrri vnlapkfsvp rqiagstegr
      421 kevaikddvp qksvleveqk sflskdcgee ceqthalqen ftphsgieat cslptpdada
      481 llhdtclhse psfltpkysc kfcvvsrtee qartlkqqqv vdekeskseq lssedtnsqp
      541 dilssvvsey pedssilasc geivhkaddp epaeasqped nqdvnmkcsf lglplslgfa
      601 fqlvqlfgsp glplesllpd dyivpldwkv skmiyllwkt sveekqksgg lqngdamadd
      661 iisledlnkn gqenqgssei lpemelfqgv meenvmtsas tgcldavfhq s
//
LOCUS       XP_053921344             667 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128852026 isoform X2 [Cuculus canorus].
ACCESSION   XP_053921344
VERSION     XP_053921344.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065369.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..667
                     /product="uncharacterized protein LOC128852026 isoform X2"
                     /calculated_mol_wt=73538
     CDS             1..667
                     /gene="LOC128852026"
                     /coded_by="XM_054065369.1:2771..4774"
                     /db_xref="GeneID:128852026"
ORIGIN      
        1 mkdnhteitk qkldkaahhp ipdnqetshs eedyseeeks kslcafsesp kepvtaceeq
       61 pggddeslke aavlsreksp iavseatvrs ssalenelpv asdsshlidv eafsnenlnr
      121 nafndeetnq rhkenlcqns flkgnndens iqetegaced ynmlrlsmen klesyqitne
      181 ldpeakllsf nseekeisqc nnsnihdnvp dnktedkgtf kgeenissdw ssknlltedl
      241 qlgfdtqvss wsedkfvgeq rpwemnepeq tctnsstpln cclsnqgllk enhpvtvtee
      301 adnmlsngls asapcevhsd slvearagfm qcssevnvpi ngaapiiskg krcrrivnla
      361 pkfsvprqia gstegrkeva ikddvpqksv leveqksfls kdcgeeceqt halqenftph
      421 sgieatcslp tpdadallhd tclhsepsfl tpkysckfcv vsrteeqart lkqqqvvdek
      481 eskseqlsse dtnsqpdils svvseypeds silascgeiv hkaddpepae asqpednqdv
      541 nmkcsflglp lslgfafqlv qlfgspglpl esllpddyiv pldwkvskmi yllwktsvee
      601 kqksgglqng damaddiisl edlnkngqen qgsseilpem elfqgvmeen vmtsastgcl
      661 davfhqs
//
LOCUS       XP_053921347             667 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128852026 isoform X2 [Cuculus canorus].
ACCESSION   XP_053921347
VERSION     XP_053921347.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065372.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..667
                     /product="uncharacterized protein LOC128852026 isoform X2"
                     /calculated_mol_wt=73538
     CDS             1..667
                     /gene="LOC128852026"
                     /coded_by="XM_054065372.1:2050..4053"
                     /db_xref="GeneID:128852026"
ORIGIN      
        1 mkdnhteitk qkldkaahhp ipdnqetshs eedyseeeks kslcafsesp kepvtaceeq
       61 pggddeslke aavlsreksp iavseatvrs ssalenelpv asdsshlidv eafsnenlnr
      121 nafndeetnq rhkenlcqns flkgnndens iqetegaced ynmlrlsmen klesyqitne
      181 ldpeakllsf nseekeisqc nnsnihdnvp dnktedkgtf kgeenissdw ssknlltedl
      241 qlgfdtqvss wsedkfvgeq rpwemnepeq tctnsstpln cclsnqgllk enhpvtvtee
      301 adnmlsngls asapcevhsd slvearagfm qcssevnvpi ngaapiiskg krcrrivnla
      361 pkfsvprqia gstegrkeva ikddvpqksv leveqksfls kdcgeeceqt halqenftph
      421 sgieatcslp tpdadallhd tclhsepsfl tpkysckfcv vsrteeqart lkqqqvvdek
      481 eskseqlsse dtnsqpdils svvseypeds silascgeiv hkaddpepae asqpednqdv
      541 nmkcsflglp lslgfafqlv qlfgspglpl esllpddyiv pldwkvskmi yllwktsvee
      601 kqksgglqng damaddiisl edlnkngqen qgsseilpem elfqgvmeen vmtsastgcl
      661 davfhqs
//
LOCUS       XP_009564774             653 aa            linear   VRT 09-MAR-2023
DEFINITION  NEDD4-binding protein 2-like 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_009564774
VERSION     XP_009564774.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566479.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564774.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..653
                     /product="NEDD4-binding protein 2-like 2 isoform X1"
                     /calculated_mol_wt=74681
     Region          475..607
                     /region_name="AAA_33"
                     /note="AAA domain; pfam13671"
                     /db_xref="CDD:463952"
     CDS             1..653
                     /gene="LOC104064177"
                     /coded_by="XM_009566479.2:135..2096"
                     /db_xref="GeneID:104064177"
ORIGIN      
        1 mlhaessirl lechdeitie pcskkmkste gaygkmsndg nqgiqeevdt ermsnglisv
       61 hasdnqgqye mqkqeeipag vsgtlkeilp eynlvlgqpv dsetvqnvns pfasindaev
      121 kekkghfikn nigednirng sasfsvnrna sdedfftske figpiykpae tnkqdedgsc
      181 sehknnegdq nelhekraer ketnkmqits stvpeiddel dqfykeinql enenlhtnfa
      241 eketetsqeq cspyncsqts qedyqhallg spqpfcengq rsfgeqnsqk tsnkqqfvve
      301 tsvwktedtf ngqvdskywn ysvpefrpaw qstdsfivpq gphpprfsnh qshfqilntq
      361 pqethtlpse ngelsyknyh gfhgntdins hsplldqstn yaghidihtt qvfrngnndq
      421 yelqnndqne pqnngfcetr kecwkdpkad stegmdsfss lqlpeerfgy sqkfllilrg
      481 lpgsgkstls rillgqsrdg ivfstddyfr qqdgytynat qlgdahdwnq krakqameqg
      541 kspviidntn tqawemkpyv evalekgyrv efhepdtwwk fdpeelekrn khgvtrekia
      601 qmleryeyqi sipivmnsva pphkntqrpp aqrrhrwggn tdlwnyfsis ssr
//
LOCUS       XP_053921362             550 aa            linear   VRT 09-MAR-2023
DEFINITION  NEDD4-binding protein 2-like 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053921362
VERSION     XP_053921362.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065387.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..550
                     /product="NEDD4-binding protein 2-like 2 isoform X2"
                     /calculated_mol_wt=62246
     Region          475..>533
                     /region_name="AAA_33"
                     /note="AAA domain; pfam13671"
                     /db_xref="CDD:463952"
     CDS             1..550
                     /gene="LOC104064177"
                     /coded_by="XM_054065387.1:135..1787"
                     /db_xref="GeneID:104064177"
ORIGIN      
        1 mlhaessirl lechdeitie pcskkmkste gaygkmsndg nqgiqeevdt ermsnglisv
       61 hasdnqgqye mqkqeeipag vsgtlkeilp eynlvlgqpv dsetvqnvns pfasindaev
      121 kekkghfikn nigednirng sasfsvnrna sdedfftske figpiykpae tnkqdedgsc
      181 sehknnegdq nelhekraer ketnkmqits stvpeiddel dqfykeinql enenlhtnfa
      241 eketetsqeq cspyncsqts qedyqhallg spqpfcengq rsfgeqnsqk tsnkqqfvve
      301 tsvwktedtf ngqvdskywn ysvpefrpaw qstdsfivpq gphpprfsnh qshfqilntq
      361 pqethtlpse ngelsyknyh gfhgntdins hsplldqstn yaghidihtt qvfrngnndq
      421 yelqnndqne pqnngfcetr kecwkdpkad stegmdsfss lqlpeerfgy sqkfllilrg
      481 lpgsgkstls rillgqsrdg ivfstddyfr qqdgytynat qlgdahdwnq krvlqpisvp
      541 hcnlqdasae
//
LOCUS       XP_053921368             545 aa            linear   VRT 09-MAR-2023
DEFINITION  NEDD4-binding protein 2-like 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053921368
VERSION     XP_053921368.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065393.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..545
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..545
                     /product="NEDD4-binding protein 2-like 2 isoform X3"
                     /calculated_mol_wt=61823
     Region          475..>534
                     /region_name="AAA_33"
                     /note="AAA domain; pfam13671"
                     /db_xref="CDD:463952"
     CDS             1..545
                     /gene="LOC104064177"
                     /coded_by="XM_054065393.1:135..1772"
                     /db_xref="GeneID:104064177"
ORIGIN      
        1 mlhaessirl lechdeitie pcskkmkste gaygkmsndg nqgiqeevdt ermsnglisv
       61 hasdnqgqye mqkqeeipag vsgtlkeilp eynlvlgqpv dsetvqnvns pfasindaev
      121 kekkghfikn nigednirng sasfsvnrna sdedfftske figpiykpae tnkqdedgsc
      181 sehknnegdq nelhekraer ketnkmqits stvpeiddel dqfykeinql enenlhtnfa
      241 eketetsqeq cspyncsqts qedyqhallg spqpfcengq rsfgeqnsqk tsnkqqfvve
      301 tsvwktedtf ngqvdskywn ysvpefrpaw qstdsfivpq gphpprfsnh qshfqilntq
      361 pqethtlpse ngelsyknyh gfhgntdins hsplldqstn yaghidihtt qvfrngnndq
      421 yelqnndqne pqnngfcetr kecwkdpkad stegmdsfss lqlpeerfgy sqkfllilrg
      481 lpgsgkstls rillgqsrdg ivfstddyfr qqdgytynat qlgdahdwnq krvavlwnle
      541 aayys
//
LOCUS       XP_053921378             455 aa            linear   VRT 09-MAR-2023
DEFINITION  GA-binding protein alpha chain [Cuculus canorus].
ACCESSION   XP_053921378
VERSION     XP_053921378.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065403.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..455
                     /product="GA-binding protein alpha chain"
                     /calculated_mol_wt=51193
     Region          40..119
                     /region_name="GABP-alpha"
                     /note="GA-binding protein alpha chain; pfam11620"
                     /db_xref="CDD:463311"
     Region          168..254
                     /region_name="SAM_PNT-GABP-alpha"
                     /note="Sterile alpha motif (SAM)/Pointed domain of
                     GA-binding protein (GABP) alpha chain; cd08534"
                     /db_xref="CDD:176084"
     Region          320..404
                     /region_name="ETS"
                     /note="erythroblast transformation specific domain;
                     smart00413"
                     /db_xref="CDD:197710"
     CDS             1..455
                     /gene="GABPA"
                     /coded_by="XM_054065403.1:218..1585"
                     /db_xref="GeneID:104064779"
ORIGIN      
        1 mtkreaeeli eieidgtekq ecteesiveq tyttaefvsq aidinepvgn lkklleprlq
       61 csldaheicl qdiqldpdrs lfdqgvktdg tvqlsvqvis rqgiepklni leivkpvetv
      121 evvidpdahh aeaeahlvee aqvitldgtk hittisdets eqvtrwaaal egyrkeqerl
      181 gipydpvqws tdqvlhwvvw vmkefsmtdi dlnslsipgr elcslsqedf fqrvprgeil
      241 wshlellrky vlasqehsge iatvtidqpv qiipasvqpa tpttikvins sakaakvqra
      301 prisgedrss pgnrtgnngq iqlwqfllel ltdkdardci swvgdegefk lnqpelvaqk
      361 wgqrknkptm nyeklsralr yyydgdmick vqgkrfvykf vcdlktligy saaelnrlvt
      421 eceqkklakm qlhgiaqpvt avalataslq tekdn
//
LOCUS       XP_053921386             455 aa            linear   VRT 09-MAR-2023
DEFINITION  GA-binding protein alpha chain [Cuculus canorus].
ACCESSION   XP_053921386
VERSION     XP_053921386.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065411.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..455
                     /product="GA-binding protein alpha chain"
                     /calculated_mol_wt=51193
     Region          40..119
                     /region_name="GABP-alpha"
                     /note="GA-binding protein alpha chain; pfam11620"
                     /db_xref="CDD:463311"
     Region          168..254
                     /region_name="SAM_PNT-GABP-alpha"
                     /note="Sterile alpha motif (SAM)/Pointed domain of
                     GA-binding protein (GABP) alpha chain; cd08534"
                     /db_xref="CDD:176084"
     Region          320..404
                     /region_name="ETS"
                     /note="erythroblast transformation specific domain;
                     smart00413"
                     /db_xref="CDD:197710"
     CDS             1..455
                     /gene="GABPA"
                     /coded_by="XM_054065411.1:435..1802"
                     /db_xref="GeneID:104064779"
ORIGIN      
        1 mtkreaeeli eieidgtekq ecteesiveq tyttaefvsq aidinepvgn lkklleprlq
       61 csldaheicl qdiqldpdrs lfdqgvktdg tvqlsvqvis rqgiepklni leivkpvetv
      121 evvidpdahh aeaeahlvee aqvitldgtk hittisdets eqvtrwaaal egyrkeqerl
      181 gipydpvqws tdqvlhwvvw vmkefsmtdi dlnslsipgr elcslsqedf fqrvprgeil
      241 wshlellrky vlasqehsge iatvtidqpv qiipasvqpa tpttikvins sakaakvqra
      301 prisgedrss pgnrtgnngq iqlwqfllel ltdkdardci swvgdegefk lnqpelvaqk
      361 wgqrknkptm nyeklsralr yyydgdmick vqgkrfvykf vcdlktligy saaelnrlvt
      421 eceqkklakm qlhgiaqpvt avalataslq tekdn
//
LOCUS       XP_053921395             295 aa            linear   VRT 09-MAR-2023
DEFINITION  junctional adhesion molecule B [Cuculus canorus].
ACCESSION   XP_053921395
VERSION     XP_053921395.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065420.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..295
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..295
                     /product="junctional adhesion molecule B"
                     /calculated_mol_wt=32092
     Region          26..129
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          42..46
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409538"
     Region          57..61
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409538"
     Region          90..94
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409538"
     Region          104..109
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409538"
     Region          121..124
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409538"
     Region          135..232
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          149..153
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409542"
     Region          163..167
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409542"
     Region          196..200
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409542"
     Region          210..215
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409542"
     Region          225..228
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409542"
     CDS             1..295
                     /gene="JAM2"
                     /coded_by="XM_054065420.1:103..990"
                     /db_xref="GeneID:104064781"
ORIGIN      
        1 masrslrlll lgylgvlsyc kvsgisietd nknvkaeefk eailsckhkf skamsfriew
       61 kkiqsqgvsf vyyngeftgd lrgraemlnt girirnvtrk dsgtyrceis akseegqrlg
      121 eatitltvlv apatpvcdvp ssamtgtvve lscketegsp pseyqwykng vallektgtg
      181 saraanityt mnkksgtllf ntvtksdtge yfceasngig lsqkcsvkrm qvddlnvsai
      241 iaavvvvalv malcglgvly aqkkgyftke sssqgktnyq stsekdfkht ksfvi
//
LOCUS       XP_053921405             107 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP synthase-coupling factor 6, mitochondrial [Cuculus canorus].
ACCESSION   XP_053921405
VERSION     XP_053921405.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065430.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..107
                     /product="ATP synthase-coupling factor 6, mitochondrial"
                     /calculated_mol_wt=12140
     Region          1..98
                     /region_name="ATP-synt_F6"
                     /note="Mitochondrial ATP synthase coupling factor 6;
                     pfam05511"
                     /db_xref="CDD:461669"
     CDS             1..107
                     /gene="ATP5PF"
                     /coded_by="XM_054065430.1:179..502"
                     /db_xref="GeneID:104064780"
ORIGIN      
        1 milhqilhls slfrsavsih lrrniglsai vfnkakeldp iqklfvdkir eyntkskqag
       61 gpvdagpefq keineslarl qraygegdlt kfpefkfeep kfeetpk
//
LOCUS       XP_053921410             107 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP synthase-coupling factor 6, mitochondrial [Cuculus canorus].
ACCESSION   XP_053921410
VERSION     XP_053921410.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065435.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..107
                     /product="ATP synthase-coupling factor 6, mitochondrial"
                     /calculated_mol_wt=12140
     Region          1..98
                     /region_name="ATP-synt_F6"
                     /note="Mitochondrial ATP synthase coupling factor 6;
                     pfam05511"
                     /db_xref="CDD:461669"
     CDS             1..107
                     /gene="ATP5PF"
                     /coded_by="XM_054065435.1:176..499"
                     /db_xref="GeneID:104064780"
ORIGIN      
        1 milhqilhls slfrsavsih lrrniglsai vfnkakeldp iqklfvdkir eyntkskqag
       61 gpvdagpefq keineslarl qraygegdlt kfpefkfeep kfeetpk
//
LOCUS       XP_053921419             785 aa            linear   VRT 09-MAR-2023
DEFINITION  aconitate hydratase, mitochondrial [Cuculus canorus].
ACCESSION   XP_053921419
VERSION     XP_053921419.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065444.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..785
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..785
                     /product="aconitate hydratase, mitochondrial"
                     /calculated_mol_wt=85549
     Region          47..777
                     /region_name="aconitase_mito"
                     /note="aconitate hydratase, mitochondrial; TIGR01340"
                     /db_xref="CDD:273561"
     CDS             1..785
                     /gene="ACO2"
                     /coded_by="XM_054065444.1:110..2467"
                     /db_xref="GeneID:104055537"
ORIGIN      
        1 mapycvlaar lrhalncgir ryhvapvlcq rakvamshfe pneyinyekl ekninivrkr
       61 ldrpltlsek ivyghlddpa kqeiergkty lrlrpdrvam qdataqmaml qfissglpkv
      121 avpstihcdh lieaqsggek dlrrakdinq evynflatag akygvgfwkp gsgiihqiil
      181 enysypgvml igtdshtpng gglggvcigv ggadavdvma gipwelkcpk vigvkltgkl
      241 sgwsspkdvi lkvagiltvk ggtgaiieyh gpgvdsisct gmaticnmga eigattsifp
      301 ynarmkkylg ktgradiaal adefqqhlvp dagcqydqvi einlselkph ingpftpdla
      361 hpvsdigava ekegwpvdir vgligsctns syedmgrsaa vakqalahgl kckskftitp
      421 gseqiratie rdgyaqilrd vgglvlanac gpcigqwdrk dikkgeknti vtsynrnftg
      481 rndanpetha fvtspeivta lsiagtlkfn petdyltgad gkkfkleapd adelpklefd
      541 pgqdtyqypp kdgsgqhvdv sptsqrlqll epfdkwdgkd ledmlilikv kgkcttdhis
      601 aagpwlkfrg hldnisnnll igainiengk ansvrnaltq efgpvpdtar yykkmgikwa
      661 vigdenygeg ssrehaalep rhlggrviit ksfarihetn lkkqgllplt fadpadynki
      721 hpvdklsivg ladftpgkpl kciikhpngs qetimlnhtf nesqiewfqa gsalnrmkel
      781 qqkss
//
LOCUS       XP_009554917             110 aa            linear   VRT 09-MAR-2023
DEFINITION  PHD finger-like domain-containing protein 5A [Cuculus canorus].
ACCESSION   XP_009554917
VERSION     XP_009554917.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556622.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..110
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..110
                     /product="PHD finger-like domain-containing protein 5A"
                     /calculated_mol_wt=12274
     Region          1..104
                     /region_name="PHF5"
                     /note="PHF5-like protein; pfam03660"
                     /db_xref="CDD:461008"
     CDS             1..110
                     /gene="PHF5A"
                     /coded_by="XM_009556622.2:150..482"
                     /db_xref="GeneID:104055494"
ORIGIN      
        1 makhhpdlif crkqagvaig rlcekcdgkc vicdsyvrpc tlvricdecn ygsyqgrcvi
       61 cggpgvsday yckectiqek drdgcpkivn lgssktdlfy erkkygfkkr
//
LOCUS       XP_053921442            1117 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 25 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053921442
VERSION     XP_053921442.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065467.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1117
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1117
                     /product="ubiquitin carboxyl-terminal hydrolase 25 isoform
                     X1"
                     /calculated_mol_wt=128371
     Region          15..60
                     /region_name="UBA_UBP25"
                     /note="UBA domain found in ubiquitin carboxyl-terminal
                     hydrolase 25 (UBP25) and similar proteins; cd14354"
                     /db_xref="CDD:270539"
     Region          170..649
                     /region_name="Peptidase_C19I"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02665"
                     /db_xref="CDD:239130"
     Site            order(173,178,601,619)
                     /site_type="active"
                     /db_xref="CDD:239130"
     Region          830..1110
                     /region_name="USP25_C"
                     /note="carboxyl-terminal domain of ubiquitin-specific
                     protease 25 (USP25); cd20486"
                     /db_xref="CDD:380451"
     CDS             1..1117
                     /gene="USP25"
                     /coded_by="XM_054065467.1:213..3566"
                     /db_xref="GeneID:104061597"
ORIGIN      
        1 mtveqnvlqp ggaakhqqtf lnqlreitgi ndiqvlqqal kdsngnlela vafltaknak
       61 vpqleeatyy qtalpgndry isvgsqadtn vidltgddkd dlqraialsl eesnrafret
      121 gitdeeqais rvleasiaen kaslkrthpe vwsdspnpyd rkrqdncpvg lknvgntcwf
      181 saviqslfnl lefrrlvlnf nppanaqdlp rnqkehrnlp fmrelrylfa llvgskrkyv
      241 dpsraveilk dafksndsqq qdvsefthkl ldwledafqi kaeeeregek pknpmvelfy
      301 grflavgvle gkkfentemf gqyplqvngf kdlhecleaa miegeieslh sensaksgqe
      361 hwftelppvl tfelsrfefn qalgrpekih nklefppily ldrymhknre itrikrdeik
      421 rlkeyltvlq qrlerylsyg sgpkrfplvd vlqyalefas skpvctspvd dlggsatasg
      481 tlptqtlpst veqqgpsssd vpstspvqrs vihkpftqsr ippdlpmhpa prhmteeels
      541 vlegclhrwr tevendtrdl qesisrihrt ielmysdktm vqvpyrlhav lvhegqanag
      601 hywayiydhh qnrwmkyndi svtkstweel erdsfggyrn asayclmyin dkeqyliqee
      661 fnketgqmlv gmdtlpsdlr dyvkednkrf ekeleewdae laqkaqqekl lsqiprapap
      721 spapvqagep eyleqpsrtd iskhlkedsv qainkalaeq edrspeaimd tssdnapaqp
      781 apnqrvveva ipdvgtfvie seeggyddev mltpnmqgii maigkarnvy drcgpeagff
      841 kaikleytrl lklaqedppp ecdyrlrhai vyfiqnqapk kiiertlleq fgdhnlsfde
      901 rcrnimkvaq aklemikpde vnmeeyerwh qdyrhfrett mflmvgleff qkksymeall
      961 yliyayqnnk ellskgpyrg hdeelishyr recllklneh aaalfesgdd qevnngliim
     1021 nelivpclpl llvdemeekd ivavedmrnr wcsylgqeme pnlqekltdf lpklldcste
     1081 ikgfndppkl psysthelce ryarimlsls rtpadgr
//
LOCUS       XP_053921452            1085 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 25 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053921452
VERSION     XP_053921452.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065477.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1085
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1085
                     /product="ubiquitin carboxyl-terminal hydrolase 25 isoform
                     X2"
                     /calculated_mol_wt=124859
     Region          15..60
                     /region_name="UBA_UBP25"
                     /note="UBA domain found in ubiquitin carboxyl-terminal
                     hydrolase 25 (UBP25) and similar proteins; cd14354"
                     /db_xref="CDD:270539"
     Region          170..649
                     /region_name="Peptidase_C19I"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02665"
                     /db_xref="CDD:239130"
     Site            order(173,178,601,619)
                     /site_type="active"
                     /db_xref="CDD:239130"
     Region          808..1078
                     /region_name="USP25_C"
                     /note="carboxyl-terminal domain of ubiquitin-specific
                     protease 25 (USP25); cd20486"
                     /db_xref="CDD:380451"
     CDS             1..1085
                     /gene="USP25"
                     /coded_by="XM_054065477.1:212..3469"
                     /db_xref="GeneID:104061597"
ORIGIN      
        1 mtveqnvlqp ggaakhqqtf lnqlreitgi ndiqvlqqal kdsngnlela vafltaknak
       61 vpqleeatyy qtalpgndry isvgsqadtn vidltgddkd dlqraialsl eesnrafret
      121 gitdeeqais rvleasiaen kaslkrthpe vwsdspnpyd rkrqdncpvg lknvgntcwf
      181 saviqslfnl lefrrlvlnf nppanaqdlp rnqkehrnlp fmrelrylfa llvgskrkyv
      241 dpsraveilk dafksndsqq qdvsefthkl ldwledafqi kaeeeregek pknpmvelfy
      301 grflavgvle gkkfentemf gqyplqvngf kdlhecleaa miegeieslh sensaksgqe
      361 hwftelppvl tfelsrfefn qalgrpekih nklefppily ldrymhknre itrikrdeik
      421 rlkeyltvlq qrlerylsyg sgpkrfplvd vlqyalefas skpvctspvd dlggsatasg
      481 tlptqtlpst veqqgpsssd vpstspvqrs vihkpftqsr ippdlpmhpa prhmteeels
      541 vlegclhrwr tevendtrdl qesisrihrt ielmysdktm vqvpyrlhav lvhegqanag
      601 hywayiydhh qnrwmkyndi svtkstweel erdsfggyrn asayclmyin dkeqyliqee
      661 fnketgqmlv gmdtlpsdlr dyvkednkrf ekeleewdae laqkaqqekl lsqiprapap
      721 spapvqagep eyleqpsrtd iskhlkedsv qainkalaeq edrspeaimd tssdnapaqp
      781 apnqrvveva ipdvgtfvie seeggyddea ikleytrllk laqedpppec dyrlrhaivy
      841 fiqnqapkki iertlleqfg dhnlsfderc rnimkvaqak lemikpdevn meeyerwhqd
      901 yrhfrettmf lmvgleffqk ksymeallyl iyayqnnkel lskgpyrghd eelishyrre
      961 cllklnehaa alfesgddqe vnngliimne livpclplll vdemeekdiv avedmrnrwc
     1021 sylgqemepn lqekltdflp klldcsteik gfndppklps ysthelcery arimlslsrt
     1081 padgr
//
LOCUS       XP_053921462            1047 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 25 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053921462
VERSION     XP_053921462.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065487.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1047
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1047
                     /product="ubiquitin carboxyl-terminal hydrolase 25 isoform
                     X3"
                     /calculated_mol_wt=120874
     Region          15..60
                     /region_name="UBA_UBP25"
                     /note="UBA domain found in ubiquitin carboxyl-terminal
                     hydrolase 25 (UBP25) and similar proteins; cd14354"
                     /db_xref="CDD:270539"
     Region          170..649
                     /region_name="Peptidase_C19I"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02665"
                     /db_xref="CDD:239130"
     Site            order(173,178,601,619)
                     /site_type="active"
                     /db_xref="CDD:239130"
     Region          760..1040
                     /region_name="USP25_C"
                     /note="carboxyl-terminal domain of ubiquitin-specific
                     protease 25 (USP25); cd20486"
                     /db_xref="CDD:380451"
     CDS             1..1047
                     /gene="USP25"
                     /coded_by="XM_054065487.1:211..3354"
                     /db_xref="GeneID:104061597"
ORIGIN      
        1 mtveqnvlqp ggaakhqqtf lnqlreitgi ndiqvlqqal kdsngnlela vafltaknak
       61 vpqleeatyy qtalpgndry isvgsqadtn vidltgddkd dlqraialsl eesnrafret
      121 gitdeeqais rvleasiaen kaslkrthpe vwsdspnpyd rkrqdncpvg lknvgntcwf
      181 saviqslfnl lefrrlvlnf nppanaqdlp rnqkehrnlp fmrelrylfa llvgskrkyv
      241 dpsraveilk dafksndsqq qdvsefthkl ldwledafqi kaeeeregek pknpmvelfy
      301 grflavgvle gkkfentemf gqyplqvngf kdlhecleaa miegeieslh sensaksgqe
      361 hwftelppvl tfelsrfefn qalgrpekih nklefppily ldrymhknre itrikrdeik
      421 rlkeyltvlq qrlerylsyg sgpkrfplvd vlqyalefas skpvctspvd dlggsatasg
      481 tlptqtlpst veqqgpsssd vpstspvqrs vihkpftqsr ippdlpmhpa prhmteeels
      541 vlegclhrwr tevendtrdl qesisrihrt ielmysdktm vqvpyrlhav lvhegqanag
      601 hywayiydhh qnrwmkyndi svtkstweel erdsfggyrn asayclmyin dkeqyliqee
      661 fnketgqmlv gmdtlpsdlr dyvkednkrf ekeleewdae laqkaqqekl lsqiprapap
      721 spapvqagep eyleqpsrtd iskhlkedsv qainkalaeq edrspeaimd taikleytrl
      781 lklaqedppp ecdyrlrhai vyfiqnqapk kiiertlleq fgdhnlsfde rcrnimkvaq
      841 aklemikpde vnmeeyerwh qdyrhfrett mflmvgleff qkksymeall yliyayqnnk
      901 ellskgpyrg hdeelishyr recllklneh aaalfesgdd qevnngliim nelivpclpl
      961 llvdemeekd ivavedmrnr wcsylgqeme pnlqekltdf lpklldcste ikgfndppkl
     1021 psysthelce ryarimlsls rtpadgr
//
LOCUS       XP_053921473             896 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 25 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053921473
VERSION     XP_053921473.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065498.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..896
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..896
                     /product="ubiquitin carboxyl-terminal hydrolase 25 isoform
                     X4"
                     /calculated_mol_wt=103644
     Region          37..428
                     /region_name="Peptidase_C19I"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02665"
                     /db_xref="CDD:239130"
     Region          609..889
                     /region_name="USP25_C"
                     /note="carboxyl-terminal domain of ubiquitin-specific
                     protease 25 (USP25); cd20486"
                     /db_xref="CDD:380451"
     CDS             1..896
                     /gene="USP25"
                     /coded_by="XM_054065498.1:412..3102"
                     /db_xref="GeneID:104061597"
ORIGIN      
        1 mrelrylfal lvgskrkyvd psraveilkd afksndsqqq dvsefthkll dwledafqik
       61 aeeeregekp knpmvelfyg rflavgvleg kkfentemfg qyplqvngfk dlhecleaam
      121 iegeieslhs ensaksgqeh wftelppvlt felsrfefnq algrpekihn klefppilyl
      181 drymhknrei trikrdeikr lkeyltvlqq rlerylsygs gpkrfplvdv lqyalefass
      241 kpvctspvdd lggsatasgt lptqtlpstv eqqgpsssdv pstspvqrsv ihkpftqsri
      301 ppdlpmhpap rhmteeelsv legclhrwrt evendtrdlq esisrihrti elmysdktmv
      361 qvpyrlhavl vhegqanagh ywayiydhhq nrwmkyndis vtkstweele rdsfggyrna
      421 sayclmyind keqyliqeef nketgqmlvg mdtlpsdlrd yvkednkrfe keleewdael
      481 aqkaqqekll sqiprapaps papvqagepe yleqpsrtdi skhlkedsvq ainkalaeqe
      541 drspeaimdt ssdnapaqpa pnqrvvevai pdvgtfvies eeggyddevm ltpnmqgiim
      601 aigkarnvyd rcgpeagffk aikleytrll klaqedpppe cdyrlrhaiv yfiqnqapkk
      661 iiertlleqf gdhnlsfder crnimkvaqa klemikpdev nmeeyerwhq dyrhfrettm
      721 flmvgleffq kksymeally liyayqnnke llskgpyrgh deelishyrr ecllklneha
      781 aalfesgddq evnngliimn elivpclpll lvdemeekdi vavedmrnrw csylgqemep
      841 nlqekltdfl pklldcstei kgfndppklp systhelcer yarimlslsr tpadgr
//
LOCUS       XP_053921483            2353 aa            linear   VRT 09-MAR-2023
DEFINITION  receptor-type tyrosine-protein phosphatase zeta isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053921483
VERSION     XP_053921483.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065508.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2353
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2353
                     /product="receptor-type tyrosine-protein phosphatase zeta
                     isoform X1"
                     /calculated_mol_wt=260166
     Region          45..298
                     /region_name="alpha_CARP_receptor_like"
                     /note="Carbonic anhydrase alpha related protein,
                     receptor_like subfamily. Carbonic anhydrase related
                     proteins (CARPs) are sequence similar to carbonic
                     anhydrases. Carbonic anhydrases are zinc-containing
                     enzymes that catalyze the reversible hydration of
                     carbon...; cd03122"
                     /db_xref="CDD:239396"
     Region          313..401
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(397..398,400..401)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1727..2032
                     /region_name="PTP_DSP_cys"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; cl28904"
                     /db_xref="CDD:475123"
     Region          2115..2318
                     /region_name="R-PTP-Z-2"
                     /note="catalytic domain of receptor-type tyrosine-protein
                     phosphatase Z, repeat 2; cd17669"
                     /db_xref="CDD:350507"
     CDS             1..2353
                     /gene="PTPRZ1"
                     /coded_by="XM_054065508.1:235..7296"
                     /db_xref="GeneID:104061631"
ORIGIN      
        1 mlilgrwvac iqlvcilrvd lvygyyrqqr klieeidwsy tgtlnqknwg kkypacngak
       61 qspinidedl tqvnvnlkkl kfhgweketl edtfihntgk tveinltngy yvsgggldtl
      121 fkaskitfhw gkcnvssdgs ehslegrkfp lemqifcyda dqfttfeeai kgngklrals
      181 ilfeigledn hdynpiingv dsvsrfgkqa plepfillnl lpnatdkyyt yngslstppc
      241 setvewivfk dtisisedql avfcevltmq qsgyvmlmdy lqnnfreqqy kffgqvfssy
      301 tgqeeiheav cssepenvqs dpknytsllv twerprvvyd ttierfavfy qqldgedqtk
      361 hefltdgyqd lgailnnllp ntsyvlqiva vcsnglygky sdqvivdmpl edteadlipe
      421 lneteeyede vdeketevde etsvipstds tlnqirkkdf qvttsiysqe ktgtkpneak
      481 tnryltreee mhgkddvfka vyyptsppvs eiseekedpf lesqtitgip pqligsskgv
      541 eeeyiylssg teptritttg hsdedfllsp fkphqgsddf wssvlttssa qqvteetsqe
      601 dtlpsgspdi sthdvlsqgs ikyiaggvap sssveppkli satdgnvwfh natdlttqsv
      661 dtldsrqlsq tsytdayveg lkpatvpyss spvvsedtsd adlelphyst fafssaelpp
      721 hsvssssgey gsasaasevl sqttqpvyng eiplqpsyss evfplvtpll fdsqmldttp
      781 atsdsdvtlh atpvfpsvgv sfeptlssyd dvplltfssa sssskmfhrl ytvsqmfpqs
      841 atpavasdkv slhasltlae gdtliqpsla qyadvmshqt thaasetlif ghnrthlfsq
      901 vepsssdinm hvlstvselp yalssnvgsl qsftvsydst efvhdsvdvf hqdplfssyn
      961 nvlvhkpssv isqpvtllqp trslssgmdw seaysgsesl lpdtdtlvif nvsssdsvde
     1021 ityessgfsd vnkmlqkgde ihgderelqi ssslsemasn aeskvipels tsvsdddvik
     1081 qntslqespl pvsstkgilp vslafpttki sdhdisklte nhlsvqplhv tppafddtll
     1141 kpvlsassdq alsapayskm lpstqsyfye tsaalnneal lqsslqssgd gtlpnmtsvv
     1201 psdpilaess rvhkdsstfd qilyqmapgs aatetmlhst stpsvadmls ntfskptasl
     1261 qglsvsyase eyvssillns edvqqimpsl yssdvsfqlt sieitnvfps qasnglttps
     1321 ltvdtllhva tpedsrisss vfersepasv sssstlgfdp vrmpalvsds dsdvsirhtl
     1381 plpnvhvsvt avapkseipv tlsslpvpsr essglspsvm sstdlwssvv eddydeyddg
     1441 fpvsncisct syreaqdmvv eelntkvknt edqsnliiss haekpeeeek nsipasdsqi
     1501 nhtmdrrnyt smpaltasvi pkkhnnpivl ennvqttsvp lqntsdsksw avftsdeesg
     1561 sgqgtsdsln dnetstdfsf pdlnerdteg aveagnselt pgssqssass vtsdhssvfn
     1621 mseaeasnss hesriglaes lesekktvip lvvvsaltfi clvilvgili ywrkcfqtah
     1681 fyledntspr visappapvf pvsddvgaip ikhfpkhvad lhasngfsee fetlkefyqe
     1741 iqsctvdlgi tsdssnhpdn knknryiniv aydhtrvkla qlaekdgklt dyinanyvdg
     1801 ynkpkayiaa qgplkstaed fwrmiwehnv evivmitnli ekgrrkcdqy wpaegseeyg
     1861 nflvtqksvh vlayytvrnf tlrntkikkg sqkgrscgri vtqyhytqwp dmgvpeytlp
     1921 vltfvrkash akrhavgpvv vhcstsplme hlerepphef cpsgadseka nsagvgrtgt
     1981 yivldsmlqq iqhegtvnvf gflkhirtqr nylvqteeqy ifihdalvea ilsketevle
     2041 thihayvnal lipgptgktr lekqfkllsq cntqqcdyst alkqcnrekn rtssiipver
     2101 srvgisslsg egtdyinasy imgyyqsnef iitqhpllht ikdfwrmiwd hnaqlvvmlp
     2161 dsqnmaedef vywpnkdepi ncesfkvtmi aeehkclsne ekliiqdfil eatqddyvle
     2221 vrhfqcpkwp npdspisktf elisiikeea ssrdgpmivh dehggvtagt fcalttlmhq
     2281 lenensvdvy qvakminlmr pgvftdieqy qflykailsl vstrqeenps asmdsngsal
     2341 pdgnaaesle slv
//
LOCUS       XP_053921491            2346 aa            linear   VRT 09-MAR-2023
DEFINITION  receptor-type tyrosine-protein phosphatase zeta isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053921491
VERSION     XP_053921491.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065516.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2346
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2346
                     /product="receptor-type tyrosine-protein phosphatase zeta
                     isoform X2"
                     /calculated_mol_wt=259256
     Region          45..298
                     /region_name="alpha_CARP_receptor_like"
                     /note="Carbonic anhydrase alpha related protein,
                     receptor_like subfamily. Carbonic anhydrase related
                     proteins (CARPs) are sequence similar to carbonic
                     anhydrases. Carbonic anhydrases are zinc-containing
                     enzymes that catalyze the reversible hydration of
                     carbon...; cd03122"
                     /db_xref="CDD:239396"
     Region          313..401
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(397..398,400..401)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1727..2025
                     /region_name="PTP_DSP_cys"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; cl28904"
                     /db_xref="CDD:475123"
     Region          2108..2311
                     /region_name="R-PTP-Z-2"
                     /note="catalytic domain of receptor-type tyrosine-protein
                     phosphatase Z, repeat 2; cd17669"
                     /db_xref="CDD:350507"
     CDS             1..2346
                     /gene="PTPRZ1"
                     /coded_by="XM_054065516.1:236..7276"
                     /db_xref="GeneID:104061631"
ORIGIN      
        1 mlilgrwvac iqlvcilrvd lvygyyrqqr klieeidwsy tgtlnqknwg kkypacngak
       61 qspinidedl tqvnvnlkkl kfhgweketl edtfihntgk tveinltngy yvsgggldtl
      121 fkaskitfhw gkcnvssdgs ehslegrkfp lemqifcyda dqfttfeeai kgngklrals
      181 ilfeigledn hdynpiingv dsvsrfgkqa plepfillnl lpnatdkyyt yngslstppc
      241 setvewivfk dtisisedql avfcevltmq qsgyvmlmdy lqnnfreqqy kffgqvfssy
      301 tgqeeiheav cssepenvqs dpknytsllv twerprvvyd ttierfavfy qqldgedqtk
      361 hefltdgyqd lgailnnllp ntsyvlqiva vcsnglygky sdqvivdmpl edteadlipe
      421 lneteeyede vdeketevde etsvipstds tlnqirkkdf qvttsiysqe ktgtkpneak
      481 tnryltreee mhgkddvfka vyyptsppvs eiseekedpf lesqtitgip pqligsskgv
      541 eeeyiylssg teptritttg hsdedfllsp fkphqgsddf wssvlttssa qqvteetsqe
      601 dtlpsgspdi sthdvlsqgs ikyiaggvap sssveppkli satdgnvwfh natdlttqsv
      661 dtldsrqlsq tsytdayveg lkpatvpyss spvvsedtsd adlelphyst fafssaelpp
      721 hsvssssgey gsasaasevl sqttqpvyng eiplqpsyss evfplvtpll fdsqmldttp
      781 atsdsdvtlh atpvfpsvgv sfeptlssyd dvplltfssa sssskmfhrl ytvsqmfpqs
      841 atpavasdkv slhasltlae gdtliqpsla qyadvmshqt thaasetlif ghnrthlfsq
      901 vepsssdinm hvlstvselp yalssnvgsl qsftvsydst efvhdsvdvf hqdplfssyn
      961 nvlvhkpssv isqpvtllqp trslssgmdw seaysgsesl lpdtdtlvif nvsssdsvde
     1021 ityessgfsd vnkmlqkgde ihgderelqi ssslsemasn aeskvipels tsvsdddvik
     1081 qntslqespl pvsstkgilp vslafpttki sdhdisklte nhlsvqplhv tppafddtll
     1141 kpvlsassdq alsapayskm lpstqsyfye tsaalnneal lqsslqssgd gtlpnmtsvv
     1201 psdpilaess rvhkdsstfd qilyqmapgs aatetmlhst stpsvadmls ntfskptasl
     1261 qglsvsyase eyvssillns edvqqimpsl yssdvsfqlt sieitnvfps qasnglttps
     1321 ltvdtllhva tpedsrisss vfersepasv sssstlgfdp vrmpalvsds dsdvsirhtl
     1381 plpnvhvsvt avapkseipv tlsslpvpsr essglspsvm sstdlwssvv eddydeyddg
     1441 fpvsncisct syreaqdmvv eelntkvknt edqsnliiss haekpeeeek nsipasdsqi
     1501 nhtmdrrnyt smpaltasvi pkkhnnpivl ennvqttsvp lqntsdsksw avftsdeesg
     1561 sgqgtsdsln dnetstdfsf pdlnerdteg aveagnselt pgssqssass vtsdhssvfn
     1621 mseaeasnss hesriglaes lesekktvip lvvvsaltfi clvilvgili ywrkcfqtah
     1681 fyledntspr visappapvf pvsddvgaip ikhfpkhvad lhasngfsee feeiqsctvd
     1741 lgitsdssnh pdnknknryi nivaydhtrv klaqlaekdg kltdyinany vdgynkpkay
     1801 iaaqgplkst aedfwrmiwe hnvevivmit nliekgrrkc dqywpaegse eygnflvtqk
     1861 svhvlayytv rnftlrntki kkgsqkgrsc grivtqyhyt qwpdmgvpey tlpvltfvrk
     1921 ashakrhavg pvvvhcstsp lmehlerepp hefcpsgads ekansagvgr tgtyivldsm
     1981 lqqiqhegtv nvfgflkhir tqrnylvqte eqyifihdal veailskete vlethihayv
     2041 nallipgptg ktrlekqfkl lsqcntqqcd ystalkqcnr eknrtssiip versrvgiss
     2101 lsgegtdyin asyimgyyqs nefiitqhpl lhtikdfwrm iwdhnaqlvv mlpdsqnmae
     2161 defvywpnkd epincesfkv tmiaeehkcl sneekliiqd fileatqddy vlevrhfqcp
     2221 kwpnpdspis ktfelisiik eeassrdgpm ivhdehggvt agtfcalttl mhqlenensv
     2281 dvyqvakmin lmrpgvftdi eqyqflykai lslvstrqee npsasmdsng salpdgnaae
     2341 sleslv
//
LOCUS       XP_053921497            2325 aa            linear   VRT 09-MAR-2023
DEFINITION  receptor-type tyrosine-protein phosphatase zeta isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053921497
VERSION     XP_053921497.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065522.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2325
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2325
                     /product="receptor-type tyrosine-protein phosphatase zeta
                     isoform X3"
                     /calculated_mol_wt=257088
     Region          45..298
                     /region_name="alpha_CARP_receptor_like"
                     /note="Carbonic anhydrase alpha related protein,
                     receptor_like subfamily. Carbonic anhydrase related
                     proteins (CARPs) are sequence similar to carbonic
                     anhydrases. Carbonic anhydrases are zinc-containing
                     enzymes that catalyze the reversible hydration of
                     carbon...; cd03122"
                     /db_xref="CDD:239396"
     Region          313..401
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(397..398,400..401)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1727..2004
                     /region_name="PTP_DSP_cys"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; cl28904"
                     /db_xref="CDD:475123"
     Region          2087..2290
                     /region_name="R-PTP-Z-2"
                     /note="catalytic domain of receptor-type tyrosine-protein
                     phosphatase Z, repeat 2; cd17669"
                     /db_xref="CDD:350507"
     CDS             1..2325
                     /gene="PTPRZ1"
                     /coded_by="XM_054065522.1:234..7211"
                     /db_xref="GeneID:104061631"
ORIGIN      
        1 mlilgrwvac iqlvcilrvd lvygyyrqqr klieeidwsy tgtlnqknwg kkypacngak
       61 qspinidedl tqvnvnlkkl kfhgweketl edtfihntgk tveinltngy yvsgggldtl
      121 fkaskitfhw gkcnvssdgs ehslegrkfp lemqifcyda dqfttfeeai kgngklrals
      181 ilfeigledn hdynpiingv dsvsrfgkqa plepfillnl lpnatdkyyt yngslstppc
      241 setvewivfk dtisisedql avfcevltmq qsgyvmlmdy lqnnfreqqy kffgqvfssy
      301 tgqeeiheav cssepenvqs dpknytsllv twerprvvyd ttierfavfy qqldgedqtk
      361 hefltdgyqd lgailnnllp ntsyvlqiva vcsnglygky sdqvivdmpl edteadlipe
      421 lneteeyede vdeketevde etsvipstds tlnqirkkdf qvttsiysqe ktgtkpneak
      481 tnryltreee mhgkddvfka vyyptsppvs eiseekedpf lesqtitgip pqligsskgv
      541 eeeyiylssg teptritttg hsdedfllsp fkphqgsddf wssvlttssa qqvteetsqe
      601 dtlpsgspdi sthdvlsqgs ikyiaggvap sssveppkli satdgnvwfh natdlttqsv
      661 dtldsrqlsq tsytdayveg lkpatvpyss spvvsedtsd adlelphyst fafssaelpp
      721 hsvssssgey gsasaasevl sqttqpvyng eiplqpsyss evfplvtpll fdsqmldttp
      781 atsdsdvtlh atpvfpsvgv sfeptlssyd dvplltfssa sssskmfhrl ytvsqmfpqs
      841 atpavasdkv slhasltlae gdtliqpsla qyadvmshqt thaasetlif ghnrthlfsq
      901 vepsssdinm hvlstvselp yalssnvgsl qsftvsydst efvhdsvdvf hqdplfssyn
      961 nvlvhkpssv isqpvtllqp trslssgmdw seaysgsesl lpdtdtlvif nvsssdsvde
     1021 ityessgfsd vnkmlqkgde ihgderelqi ssslsemasn aeskvipels tsvsdddvik
     1081 qntslqespl pvsstkgilp vslafpttki sdhdisklte nhlsvqplhv tppafddtll
     1141 kpvlsassdq alsapayskm lpstqsyfye tsaalnneal lqsslqssgd gtlpnmtsvv
     1201 psdpilaess rvhkdsstfd qilyqmapgs aatetmlhst stpsvadmls ntfskptasl
     1261 qglsvsyase eyvssillns edvqqimpsl yssdvsfqlt sieitnvfps qasnglttps
     1321 ltvdtllhva tpedsrisss vfersepasv sssstlgfdp vrmpalvsds dsdvsirhtl
     1381 plpnvhvsvt avapkseipv tlsslpvpsr essglspsvm sstdlwssvv eddydeyddg
     1441 fpvsncisct syreaqdmvv eelntkvknt edqsnliiss haekpeeeek nsipasdsqi
     1501 nhtmdrrnyt smpaltasvi pkkhnnpivl ennvqttsvp lqntsdsksw avftsdeesg
     1561 sgqgtsdsln dnetstdfsf pdlnerdteg aveagnselt pgssqssass vtsdhssvfn
     1621 mseaeasnss hesriglaes lesekktvip lvvvsaltfi clvilvgili ywrkcfqtah
     1681 fyledntspr visappapvf pvsddvgaip ikhfpkhvad lhasngfsee fetlkefyqe
     1741 iqsctvdlgi tsdssnhpdn knknryiniv aydhtrvkla qlaekdgklt dyinanyvdg
     1801 ynkpkayiaa qgplkstaed fwrmiwehnv evivmitnli ekgrrkcdqy wpaegseeyg
     1861 nflvtqksvh vlayytvrnf tlrntkikkg sqkgrscgri vtqyhytqwp dmgvpeytlp
     1921 vltfvrkash akrhavgpvv vhcsagvgrt gtyivldsml qqiqhegtvn vfgflkhirt
     1981 qrnylvqtee qyifihdalv eailsketev lethihayvn allipgptgk trlekqfkll
     2041 sqcntqqcdy stalkqcnre knrtssiipv ersrvgissl sgegtdyina syimgyyqsn
     2101 efiitqhpll htikdfwrmi wdhnaqlvvm lpdsqnmaed efvywpnkde pincesfkvt
     2161 miaeehkcls neekliiqdf ileatqddyv levrhfqcpk wpnpdspisk tfelisiike
     2221 eassrdgpmi vhdehggvta gtfcalttlm hqlenensvd vyqvakminl mrpgvftdie
     2281 qyqflykail slvstrqeen psasmdsngs alpdgnaaes leslv
//
LOCUS       XP_053921503            2323 aa            linear   VRT 09-MAR-2023
DEFINITION  receptor-type tyrosine-protein phosphatase zeta isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053921503
VERSION     XP_053921503.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065528.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2323
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2323
                     /product="receptor-type tyrosine-protein phosphatase zeta
                     isoform X4"
                     /calculated_mol_wt=257196
     Region          45..298
                     /region_name="alpha_CARP_receptor_like"
                     /note="Carbonic anhydrase alpha related protein,
                     receptor_like subfamily. Carbonic anhydrase related
                     proteins (CARPs) are sequence similar to carbonic
                     anhydrases. Carbonic anhydrases are zinc-containing
                     enzymes that catalyze the reversible hydration of
                     carbon...; cd03122"
                     /db_xref="CDD:239396"
     Region          313..401
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(397..398,400..401)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1697..2002
                     /region_name="PTP_DSP_cys"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; cl28904"
                     /db_xref="CDD:475123"
     Region          2085..2288
                     /region_name="R-PTP-Z-2"
                     /note="catalytic domain of receptor-type tyrosine-protein
                     phosphatase Z, repeat 2; cd17669"
                     /db_xref="CDD:350507"
     CDS             1..2323
                     /gene="PTPRZ1"
                     /coded_by="XM_054065528.1:235..7206"
                     /db_xref="GeneID:104061631"
ORIGIN      
        1 mlilgrwvac iqlvcilrvd lvygyyrqqr klieeidwsy tgtlnqknwg kkypacngak
       61 qspinidedl tqvnvnlkkl kfhgweketl edtfihntgk tveinltngy yvsgggldtl
      121 fkaskitfhw gkcnvssdgs ehslegrkfp lemqifcyda dqfttfeeai kgngklrals
      181 ilfeigledn hdynpiingv dsvsrfgkqa plepfillnl lpnatdkyyt yngslstppc
      241 setvewivfk dtisisedql avfcevltmq qsgyvmlmdy lqnnfreqqy kffgqvfssy
      301 tgqeeiheav cssepenvqs dpknytsllv twerprvvyd ttierfavfy qqldgedqtk
      361 hefltdgyqd lgailnnllp ntsyvlqiva vcsnglygky sdqvivdmpl edteadlipe
      421 lneteeyede vdeketevde etsvipstds tlnqirkkdf qvttsiysqe ktgtkpneak
      481 tnryltreee mhgkddvfka vyyptsppvs eiseekedpf lesqtitgip pqligsskgv
      541 eeeyiylssg teptritttg hsdedfllsp fkphqgsddf wssvlttssa qqvteetsqe
      601 dtlpsgspdi sthdvlsqgs ikyiaggvap sssveppkli satdgnvwfh natdlttqsv
      661 dtldsrqlsq tsytdayveg lkpatvpyss spvvsedtsd adlelphyst fafssaelpp
      721 hsvssssgey gsasaasevl sqttqpvyng eiplqpsyss evfplvtpll fdsqmldttp
      781 atsdsdvtlh atpvfpsvgv sfeptlssyd dvplltfssa sssskmfhrl ytvsqmfpqs
      841 atpavasdkv slhasltlae gdtliqpsla qyadvmshqt thaasetlif ghnrthlfsq
      901 vepsssdinm hvlstvselp yalssnvgsl qsftvsydst efvhdsvdvf hqdplfssyn
      961 nvlvhkpssv isqpvtllqp trslssgmdw seaysgsesl lpdtdtlvif nvsssdsvde
     1021 ityessgfsd vnkmlqkgde ihgderelqi ssslsemasn aeskvipels tsvsdddvik
     1081 qntslqespl pvsstkgilp vslafpttki sdhdisklte nhlsvqplhv tppafddtll
     1141 kpvlsassdq alsapayskm lpstqsyfye tsaalnneal lqsslqssgd gtlpnmtsvv
     1201 psdpilaess rvhkdsstfd qilyqmapgs aatetmlhst stpsvadmls ntfskptasl
     1261 qglsvsyase eyvssillns edvqqimpsl yssdvsfqlt sieitnvfps qasnglttps
     1321 ltvdtllhva tpedsrisss vfersepasv sssstlgfdp vrmpalvsds dsdvsirhtl
     1381 plpnvhvsvt avapkseipv tlsslpvpsr essglspsvm sstdlwssvv eddydeyddg
     1441 fpvsncisct syreaqdmvv eelntkvknt edqsnliiss haekpeeeek nsipasdsqi
     1501 nhtmdrrnyt smpaltasvi pkkhnnpivl ennvqttsvp lqntsdsksw avftsdeesg
     1561 sgqgtsdsln dnetstdfsf pdlnerdteg aveaeasnss hesriglaes lesekktvip
     1621 lvvvsaltfi clvilvgili ywrkcfqtah fyledntspr visappapvf pvsddvgaip
     1681 ikhfpkhvad lhasngfsee fetlkefyqe iqsctvdlgi tsdssnhpdn knknryiniv
     1741 aydhtrvkla qlaekdgklt dyinanyvdg ynkpkayiaa qgplkstaed fwrmiwehnv
     1801 evivmitnli ekgrrkcdqy wpaegseeyg nflvtqksvh vlayytvrnf tlrntkikkg
     1861 sqkgrscgri vtqyhytqwp dmgvpeytlp vltfvrkash akrhavgpvv vhcstsplme
     1921 hlerepphef cpsgadseka nsagvgrtgt yivldsmlqq iqhegtvnvf gflkhirtqr
     1981 nylvqteeqy ifihdalvea ilsketevle thihayvnal lipgptgktr lekqfkllsq
     2041 cntqqcdyst alkqcnrekn rtssiipver srvgisslsg egtdyinasy imgyyqsnef
     2101 iitqhpllht ikdfwrmiwd hnaqlvvmlp dsqnmaedef vywpnkdepi ncesfkvtmi
     2161 aeehkclsne ekliiqdfil eatqddyvle vrhfqcpkwp npdspisktf elisiikeea
     2221 ssrdgpmivh dehggvtagt fcalttlmhq lenensvdvy qvakminlmr pgvftdieqy
     2281 qflykailsl vstrqeenps asmdsngsal pdgnaaesle slv
//
LOCUS       XP_053921512            2318 aa            linear   VRT 09-MAR-2023
DEFINITION  receptor-type tyrosine-protein phosphatase zeta isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053921512
VERSION     XP_053921512.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065537.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2318
                     /product="receptor-type tyrosine-protein phosphatase zeta
                     isoform X5"
                     /calculated_mol_wt=256178
     Region          45..298
                     /region_name="alpha_CARP_receptor_like"
                     /note="Carbonic anhydrase alpha related protein,
                     receptor_like subfamily. Carbonic anhydrase related
                     proteins (CARPs) are sequence similar to carbonic
                     anhydrases. Carbonic anhydrases are zinc-containing
                     enzymes that catalyze the reversible hydration of
                     carbon...; cd03122"
                     /db_xref="CDD:239396"
     Region          313..401
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(397..398,400..401)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1727..1997
                     /region_name="PTP_DSP_cys"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; cl28904"
                     /db_xref="CDD:475123"
     Region          2080..2283
                     /region_name="R-PTP-Z-2"
                     /note="catalytic domain of receptor-type tyrosine-protein
                     phosphatase Z, repeat 2; cd17669"
                     /db_xref="CDD:350507"
     CDS             1..2318
                     /gene="PTPRZ1"
                     /coded_by="XM_054065537.1:234..7190"
                     /db_xref="GeneID:104061631"
ORIGIN      
        1 mlilgrwvac iqlvcilrvd lvygyyrqqr klieeidwsy tgtlnqknwg kkypacngak
       61 qspinidedl tqvnvnlkkl kfhgweketl edtfihntgk tveinltngy yvsgggldtl
      121 fkaskitfhw gkcnvssdgs ehslegrkfp lemqifcyda dqfttfeeai kgngklrals
      181 ilfeigledn hdynpiingv dsvsrfgkqa plepfillnl lpnatdkyyt yngslstppc
      241 setvewivfk dtisisedql avfcevltmq qsgyvmlmdy lqnnfreqqy kffgqvfssy
      301 tgqeeiheav cssepenvqs dpknytsllv twerprvvyd ttierfavfy qqldgedqtk
      361 hefltdgyqd lgailnnllp ntsyvlqiva vcsnglygky sdqvivdmpl edteadlipe
      421 lneteeyede vdeketevde etsvipstds tlnqirkkdf qvttsiysqe ktgtkpneak
      481 tnryltreee mhgkddvfka vyyptsppvs eiseekedpf lesqtitgip pqligsskgv
      541 eeeyiylssg teptritttg hsdedfllsp fkphqgsddf wssvlttssa qqvteetsqe
      601 dtlpsgspdi sthdvlsqgs ikyiaggvap sssveppkli satdgnvwfh natdlttqsv
      661 dtldsrqlsq tsytdayveg lkpatvpyss spvvsedtsd adlelphyst fafssaelpp
      721 hsvssssgey gsasaasevl sqttqpvyng eiplqpsyss evfplvtpll fdsqmldttp
      781 atsdsdvtlh atpvfpsvgv sfeptlssyd dvplltfssa sssskmfhrl ytvsqmfpqs
      841 atpavasdkv slhasltlae gdtliqpsla qyadvmshqt thaasetlif ghnrthlfsq
      901 vepsssdinm hvlstvselp yalssnvgsl qsftvsydst efvhdsvdvf hqdplfssyn
      961 nvlvhkpssv isqpvtllqp trslssgmdw seaysgsesl lpdtdtlvif nvsssdsvde
     1021 ityessgfsd vnkmlqkgde ihgderelqi ssslsemasn aeskvipels tsvsdddvik
     1081 qntslqespl pvsstkgilp vslafpttki sdhdisklte nhlsvqplhv tppafddtll
     1141 kpvlsassdq alsapayskm lpstqsyfye tsaalnneal lqsslqssgd gtlpnmtsvv
     1201 psdpilaess rvhkdsstfd qilyqmapgs aatetmlhst stpsvadmls ntfskptasl
     1261 qglsvsyase eyvssillns edvqqimpsl yssdvsfqlt sieitnvfps qasnglttps
     1321 ltvdtllhva tpedsrisss vfersepasv sssstlgfdp vrmpalvsds dsdvsirhtl
     1381 plpnvhvsvt avapkseipv tlsslpvpsr essglspsvm sstdlwssvv eddydeyddg
     1441 fpvsncisct syreaqdmvv eelntkvknt edqsnliiss haekpeeeek nsipasdsqi
     1501 nhtmdrrnyt smpaltasvi pkkhnnpivl ennvqttsvp lqntsdsksw avftsdeesg
     1561 sgqgtsdsln dnetstdfsf pdlnerdteg aveagnselt pgssqssass vtsdhssvfn
     1621 mseaeasnss hesriglaes lesekktvip lvvvsaltfi clvilvgili ywrkcfqtah
     1681 fyledntspr visappapvf pvsddvgaip ikhfpkhvad lhasngfsee feeiqsctvd
     1741 lgitsdssnh pdnknknryi nivaydhtrv klaqlaekdg kltdyinany vdgynkpkay
     1801 iaaqgplkst aedfwrmiwe hnvevivmit nliekgrrkc dqywpaegse eygnflvtqk
     1861 svhvlayytv rnftlrntki kkgsqkgrsc grivtqyhyt qwpdmgvpey tlpvltfvrk
     1921 ashakrhavg pvvvhcsagv grtgtyivld smlqqiqheg tvnvfgflkh irtqrnylvq
     1981 teeqyifihd alveailske tevlethiha yvnallipgp tgktrlekqf kllsqcntqq
     2041 cdystalkqc nreknrtssi ipversrvgi sslsgegtdy inasyimgyy qsnefiitqh
     2101 pllhtikdfw rmiwdhnaql vvmlpdsqnm aedefvywpn kdepincesf kvtmiaeehk
     2161 clsneeklii qdfileatqd dyvlevrhfq cpkwpnpdsp isktfelisi ikeeassrdg
     2221 pmivhdehgg vtagtfcalt tlmhqlenen svdvyqvakm inlmrpgvft dieqyqflyk
     2281 ailslvstrq eenpsasmds ngsalpdgna aesleslv
//
LOCUS       XP_053921518            2084 aa            linear   VRT 09-MAR-2023
DEFINITION  receptor-type tyrosine-protein phosphatase zeta isoform X6 [Cuculus
            canorus].
ACCESSION   XP_053921518
VERSION     XP_053921518.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065543.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2084
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2084
                     /product="receptor-type tyrosine-protein phosphatase zeta
                     isoform X6"
                     /calculated_mol_wt=231162
     Region          45..298
                     /region_name="alpha_CARP_receptor_like"
                     /note="Carbonic anhydrase alpha related protein,
                     receptor_like subfamily. Carbonic anhydrase related
                     proteins (CARPs) are sequence similar to carbonic
                     anhydrases. Carbonic anhydrases are zinc-containing
                     enzymes that catalyze the reversible hydration of
                     carbon...; cd03122"
                     /db_xref="CDD:239396"
     Region          313..401
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(397..398,400..401)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1458..1763
                     /region_name="PTP_DSP_cys"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; cl28904"
                     /db_xref="CDD:475123"
     Region          1846..2049
                     /region_name="R-PTP-Z-2"
                     /note="catalytic domain of receptor-type tyrosine-protein
                     phosphatase Z, repeat 2; cd17669"
                     /db_xref="CDD:350507"
     CDS             1..2084
                     /gene="PTPRZ1"
                     /coded_by="XM_054065543.1:231..6485"
                     /db_xref="GeneID:104061631"
ORIGIN      
        1 mlilgrwvac iqlvcilrvd lvygyyrqqr klieeidwsy tgtlnqknwg kkypacngak
       61 qspinidedl tqvnvnlkkl kfhgweketl edtfihntgk tveinltngy yvsgggldtl
      121 fkaskitfhw gkcnvssdgs ehslegrkfp lemqifcyda dqfttfeeai kgngklrals
      181 ilfeigledn hdynpiingv dsvsrfgkqa plepfillnl lpnatdkyyt yngslstppc
      241 setvewivfk dtisisedql avfcevltmq qsgyvmlmdy lqnnfreqqy kffgqvfssy
      301 tgqeeiheav cssepenvqs dpknytsllv twerprvvyd ttierfavfy qqldgedqtk
      361 hefltdgyqd lgailnnllp ntsyvlqiva vcsnglygky sdqvivdmpl edteadlipe
      421 lneteeyede vdeketevde etsvipstds tlnqirkkdf qvttsiysqe ktgtkpneak
      481 tnryltreee mhgkddvfka vyyptsppvs eiseekedpf lesqtitgip pqligsskgv
      541 eeeyiylssg teptritttg hsdedfllsp fkphqgsddf wssvlttssa qqvteetsqe
      601 dtlpsgspdi sthdvlsqgs ikyiaggvap sssveppkli satdgnvwfh natdlttqsv
      661 dtldsrqlsq tsytdayveg lkpatvpyss spvvsedtsd adlelphyst fafssaelpp
      721 hsvssssgey gsasaasevl sqttqpvynd eityessgfs dvnkmlqkgd eihgderelq
      781 issslsemas naeskvipel stsvsdddvi kqntslqesp lpvsstkgil pvslafpttk
      841 isdhdisklt enhlsvqplh vtppafddtl lkpvlsassd qalsapaysk mlpstqsyfy
      901 etsaalnnea llqsslqssg dgtlpnmtsv vpsdpilaes srvhkdsstf dqilyqmapg
      961 saatetmlhs tstpsvadml sntfskptas lqglsvsyas eeyvssilln sedvqqimps
     1021 lyssdvsfql tsieitnvfp sqasnglttp sltvdtllhv atpedsriss svfersepas
     1081 vsssstlgfd pvrmpalvsd sdsdvsirht lplpnvhvsv tavapkseip vtlsslpvps
     1141 ressglspsv msstdlwssv veddydeydd gfpvsncisc tsyreaqdmv veelntkvkn
     1201 tedqsnliis shaekpeeee knsipasdsq inhtmdrrny tsmpaltasv ipkkhnnpiv
     1261 lennvqttsv plqntsdsks wavftsdees gsgqgtsdsl ndnetstdfs fpdlnerdte
     1321 gaveagnsel tpgssqssas svtsdhssvf nmseaeasns shesriglae slesekktvi
     1381 plvvvsaltf iclvilvgil iywrkcfqta hfyledntsp rvisappapv fpvsddvgai
     1441 pikhfpkhva dlhasngfse efetlkefyq eiqsctvdlg itsdssnhpd nknknryini
     1501 vaydhtrvkl aqlaekdgkl tdyinanyvd gynkpkayia aqgplkstae dfwrmiwehn
     1561 vevivmitnl iekgrrkcdq ywpaegseey gnflvtqksv hvlayytvrn ftlrntkikk
     1621 gsqkgrscgr ivtqyhytqw pdmgvpeytl pvltfvrkas hakrhavgpv vvhcstsplm
     1681 ehlerepphe fcpsgadsek ansagvgrtg tyivldsmlq qiqhegtvnv fgflkhirtq
     1741 rnylvqteeq yifihdalve ailsketevl ethihayvna llipgptgkt rlekqfklls
     1801 qcntqqcdys talkqcnrek nrtssiipve rsrvgissls gegtdyinas yimgyyqsne
     1861 fiitqhpllh tikdfwrmiw dhnaqlvvml pdsqnmaede fvywpnkdep incesfkvtm
     1921 iaeehkclsn eekliiqdfi leatqddyvl evrhfqcpkw pnpdspiskt felisiikee
     1981 assrdgpmiv hdehggvtag tfcalttlmh qlenensvdv yqvakminlm rpgvftdieq
     2041 yqflykails lvstrqeenp sasmdsngsa lpdgnaaesl eslv
//
LOCUS       XP_053921525            1450 aa            linear   VRT 09-MAR-2023
DEFINITION  receptor-type tyrosine-protein phosphatase zeta isoform X7 [Cuculus
            canorus].
ACCESSION   XP_053921525
VERSION     XP_053921525.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065550.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1450
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1450
                     /product="receptor-type tyrosine-protein phosphatase zeta
                     isoform X7"
                     /calculated_mol_wt=163219
     Region          45..298
                     /region_name="alpha_CARP_receptor_like"
                     /note="Carbonic anhydrase alpha related protein,
                     receptor_like subfamily. Carbonic anhydrase related
                     proteins (CARPs) are sequence similar to carbonic
                     anhydrases. Carbonic anhydrases are zinc-containing
                     enzymes that catalyze the reversible hydration of
                     carbon...; cd03122"
                     /db_xref="CDD:239396"
     Region          313..401
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(397..398,400..401)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          852..1129
                     /region_name="PTP_DSP_cys"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; cl28904"
                     /db_xref="CDD:475123"
     Region          1212..1415
                     /region_name="R-PTP-Z-2"
                     /note="catalytic domain of receptor-type tyrosine-protein
                     phosphatase Z, repeat 2; cd17669"
                     /db_xref="CDD:350507"
     CDS             1..1450
                     /gene="PTPRZ1"
                     /coded_by="XM_054065550.1:224..4576"
                     /db_xref="GeneID:104061631"
ORIGIN      
        1 mlilgrwvac iqlvcilrvd lvygyyrqqr klieeidwsy tgtlnqknwg kkypacngak
       61 qspinidedl tqvnvnlkkl kfhgweketl edtfihntgk tveinltngy yvsgggldtl
      121 fkaskitfhw gkcnvssdgs ehslegrkfp lemqifcyda dqfttfeeai kgngklrals
      181 ilfeigledn hdynpiingv dsvsrfgkqa plepfillnl lpnatdkyyt yngslstppc
      241 setvewivfk dtisisedql avfcevltmq qsgyvmlmdy lqnnfreqqy kffgqvfssy
      301 tgqeeiheav cssepenvqs dpknytsllv twerprvvyd ttierfavfy qqldgedqtk
      361 hefltdgyqd lgailnnllp ntsyvlqiva vcsnglygky sdqvivdmpl edteadlipe
      421 lneteeyede vdeketevde etsvipstds tlnqirkkdf qvttsiysqe ktgtkpneak
      481 tnryltreee mhgkddvfka vyyptsppvs eiseekedpf lesqtitgip pqligsskgv
      541 eeeyiylssg teptritttg hsdedfllsp fkphqgsddf wssvlttssa qqvteetsqe
      601 dtlpsgspdi sthdvlsqgs ikyiaggvap sssveppkli satdgnvwfh natdlttqsv
      661 dtldsrqlsq tsytdayveg lkpatvpyss spvvsedtsd adlelphyst fafssaelpp
      721 hsvssssgey gsasaasevl sqttqpvyne asnsshesri glaeslesek ktviplvvvs
      781 altficlvil vgiliywrkc fqtahfyled ntsprvisap papvfpvsdd vgaipikhfp
      841 khvadlhasn gfseefetlk efyqeiqsct vdlgitsdss nhpdnknknr yinivaydht
      901 rvklaqlaek dgkltdyina nyvdgynkpk ayiaaqgplk staedfwrmi wehnvevivm
      961 itnliekgrr kcdqywpaeg seeygnflvt qksvhvlayy tvrnftlrnt kikkgsqkgr
     1021 scgrivtqyh ytqwpdmgvp eytlpvltfv rkashakrha vgpvvvhcsa gvgrtgtyiv
     1081 ldsmlqqiqh egtvnvfgfl khirtqrnyl vqteeqyifi hdalveails ketevlethi
     1141 hayvnallip gptgktrlek qfkllsqcnt qqcdystalk qcnreknrts siipversrv
     1201 gisslsgegt dyinasyimg yyqsnefiit qhpllhtikd fwrmiwdhna qlvvmlpdsq
     1261 nmaedefvyw pnkdepince sfkvtmiaee hkclsneekl iiqdfileat qddyvlevrh
     1321 fqcpkwpnpd spisktfeli siikeeassr dgpmivhdeh ggvtagtfca lttlmhqlen
     1381 ensvdvyqva kminlmrpgv ftdieqyqfl ykailslvst rqeenpsasm dsngsalpdg
     1441 naaesleslv
//
LOCUS       XP_053921532            1443 aa            linear   VRT 09-MAR-2023
DEFINITION  receptor-type tyrosine-protein phosphatase zeta isoform X8 [Cuculus
            canorus].
ACCESSION   XP_053921532
VERSION     XP_053921532.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065557.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1443
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1443
                     /product="receptor-type tyrosine-protein phosphatase zeta
                     isoform X8"
                     /calculated_mol_wt=162308
     Region          45..298
                     /region_name="alpha_CARP_receptor_like"
                     /note="Carbonic anhydrase alpha related protein,
                     receptor_like subfamily. Carbonic anhydrase related
                     proteins (CARPs) are sequence similar to carbonic
                     anhydrases. Carbonic anhydrases are zinc-containing
                     enzymes that catalyze the reversible hydration of
                     carbon...; cd03122"
                     /db_xref="CDD:239396"
     Region          313..401
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(397..398,400..401)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          852..1122
                     /region_name="PTP_DSP_cys"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; cl28904"
                     /db_xref="CDD:475123"
     Region          1205..1408
                     /region_name="R-PTP-Z-2"
                     /note="catalytic domain of receptor-type tyrosine-protein
                     phosphatase Z, repeat 2; cd17669"
                     /db_xref="CDD:350507"
     CDS             1..1443
                     /gene="PTPRZ1"
                     /coded_by="XM_054065557.1:224..4555"
                     /db_xref="GeneID:104061631"
ORIGIN      
        1 mlilgrwvac iqlvcilrvd lvygyyrqqr klieeidwsy tgtlnqknwg kkypacngak
       61 qspinidedl tqvnvnlkkl kfhgweketl edtfihntgk tveinltngy yvsgggldtl
      121 fkaskitfhw gkcnvssdgs ehslegrkfp lemqifcyda dqfttfeeai kgngklrals
      181 ilfeigledn hdynpiingv dsvsrfgkqa plepfillnl lpnatdkyyt yngslstppc
      241 setvewivfk dtisisedql avfcevltmq qsgyvmlmdy lqnnfreqqy kffgqvfssy
      301 tgqeeiheav cssepenvqs dpknytsllv twerprvvyd ttierfavfy qqldgedqtk
      361 hefltdgyqd lgailnnllp ntsyvlqiva vcsnglygky sdqvivdmpl edteadlipe
      421 lneteeyede vdeketevde etsvipstds tlnqirkkdf qvttsiysqe ktgtkpneak
      481 tnryltreee mhgkddvfka vyyptsppvs eiseekedpf lesqtitgip pqligsskgv
      541 eeeyiylssg teptritttg hsdedfllsp fkphqgsddf wssvlttssa qqvteetsqe
      601 dtlpsgspdi sthdvlsqgs ikyiaggvap sssveppkli satdgnvwfh natdlttqsv
      661 dtldsrqlsq tsytdayveg lkpatvpyss spvvsedtsd adlelphyst fafssaelpp
      721 hsvssssgey gsasaasevl sqttqpvyne asnsshesri glaeslesek ktviplvvvs
      781 altficlvil vgiliywrkc fqtahfyled ntsprvisap papvfpvsdd vgaipikhfp
      841 khvadlhasn gfseefeeiq sctvdlgits dssnhpdnkn knryinivay dhtrvklaql
      901 aekdgkltdy inanyvdgyn kpkayiaaqg plkstaedfw rmiwehnvev ivmitnliek
      961 grrkcdqywp aegseeygnf lvtqksvhvl ayytvrnftl rntkikkgsq kgrscgrivt
     1021 qyhytqwpdm gvpeytlpvl tfvrkashak rhavgpvvvh csagvgrtgt yivldsmlqq
     1081 iqhegtvnvf gflkhirtqr nylvqteeqy ifihdalvea ilsketevle thihayvnal
     1141 lipgptgktr lekqfkllsq cntqqcdyst alkqcnrekn rtssiipver srvgisslsg
     1201 egtdyinasy imgyyqsnef iitqhpllht ikdfwrmiwd hnaqlvvmlp dsqnmaedef
     1261 vywpnkdepi ncesfkvtmi aeehkclsne ekliiqdfil eatqddyvle vrhfqcpkwp
     1321 npdspisktf elisiikeea ssrdgpmivh dehggvtagt fcalttlmhq lenensvdvy
     1381 qvakminlmr pgvftdieqy qflykailsl vstrqeenps asmdsngsal pdgnaaesle
     1441 slv
//
LOCUS       XP_053921544            1298 aa            linear   VRT 09-MAR-2023
DEFINITION  calcium-dependent secretion activator 2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053921544
VERSION     XP_053921544.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065569.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1298
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1298
                     /product="calcium-dependent secretion activator 2 isoform
                     X1"
                     /calculated_mol_wt=148173
     Region          361..444
                     /region_name="C2"
                     /note="Protein kinase C conserved region 2 (CalB);
                     smart00239"
                     /db_xref="CDD:214577"
     Region          477..596
                     /region_name="PH_CADPS"
                     /note="Ca2+-dependent activator protein (also called CAPS)
                     Pleckstrin homology (PH) domain; cd01234"
                     /db_xref="CDD:269940"
     Region          795..1248
                     /region_name="MUN"
                     /note="MUN domain; pfam06292"
                     /db_xref="CDD:461870"
     CDS             1..1298
                     /gene="CADPS2"
                     /coded_by="XM_054065569.1:90..3986"
                     /db_xref="GeneID:104061629"
ORIGIN      
        1 mldpssseee sdelveeerr dalvaavggs prslpsrdar greagaarag spspspsvls
       61 dgrdeqerlq reererrlrl qlyvfvarci ahpfnakqpt dmarrqqkln kqqlqilker
      121 fqaflngetq ivadeafcna vrsyyevflk sdrvarmvhs ggcsandfrd vfkkniekrv
      181 rslpeidgls ketvlsswla kydaiyrgee dfckqpnrma lsavselils keqlyemfqq
      241 ilgikklehq liynacqldn gdeqaaqirr eldgrlqlae qmarerkfpk fitrdmenmy
      301 ieelrssvnl lmanleslpv skggpefklq klkrsqnsaf ldigdenevq lsksdvvlsf
      361 tleivimevq glksvapnri vyctmevegg eklqtdqaea srpqwgtqgd fttthprpiv
      421 kvklftestg vlaledkelg rvvlyptsns pkspdvhkmi vpknsqdndl kiklavrmdk
      481 pphmkhcgyl yalgqkvwkr wkkryfvlvq vsqytfamcs yrekksepqe lmqlegytvd
      541 ytaphtglqg grmffsavke gdtvifasdd eqdrilwvqa myratgqsyk pvpasqaqkm
      601 npkggnvnid tsplytdrgq khgmdefisa npckfdhasl frllqrqtld hrlndsyscl
      661 gwfspgqvfv ldeycarygv rgchrhlcyl neliehseng svidptllhy sfafcashvh
      721 gnrpdgigtv sveekerfee ikerlcslle nqishfrycf pfgrpegalk atlsllervl
      781 mkdiatpipt eevkkvvrkc lekaalinyt rlteyakiea tgekdsetmn qatparklee
      841 vlhlaelcie vlqqneehhs eafawwpell aehaekflsl ysvdmdsvle tqpqdswdsf
      901 plfqllnnal rndtflcngk fhkhlqeifv pmvvryidlm essiaqsihr gleqeswqpv
      961 ksitnslpnv alpkvpslpv nlpqipsftt ptwmtslyds tngsatsedl fwkldalqmf
     1021 vfdlhwpepe fahhleqrlk lmatdmieac vkrtriafel klqkankstd lripsslctm
     1081 fnvlvdakkq taklcildgg qeftsqwqqy hskiddliee tvkeiisllv skvvsvlegv
     1141 lsklsrydeg tffsslvsft vkaaakyvdv pkpgmdladt yimfvrqnqd ilrekvneem
     1201 yieklfdqwy sssmkvicvw ladrldlqlh iyqlktliki vkktyrdfrl qgvlegtlns
     1261 ktydtvhsrl tveeatvsvt dagglqgitm kdsdeeeg
//
LOCUS       XP_053921552            1293 aa            linear   VRT 09-MAR-2023
DEFINITION  calcium-dependent secretion activator 2 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053921552
VERSION     XP_053921552.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065577.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1293
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1293
                     /product="calcium-dependent secretion activator 2 isoform
                     X2"
                     /calculated_mol_wt=147523
     Region          361..444
                     /region_name="C2"
                     /note="Protein kinase C conserved region 2 (CalB);
                     smart00239"
                     /db_xref="CDD:214577"
     Region          477..596
                     /region_name="PH_CADPS"
                     /note="Ca2+-dependent activator protein (also called CAPS)
                     Pleckstrin homology (PH) domain; cd01234"
                     /db_xref="CDD:269940"
     Region          795..1243
                     /region_name="MUN"
                     /note="MUN domain; pfam06292"
                     /db_xref="CDD:461870"
     CDS             1..1293
                     /gene="CADPS2"
                     /coded_by="XM_054065577.1:90..3971"
                     /db_xref="GeneID:104061629"
ORIGIN      
        1 mldpssseee sdelveeerr dalvaavggs prslpsrdar greagaarag spspspsvls
       61 dgrdeqerlq reererrlrl qlyvfvarci ahpfnakqpt dmarrqqkln kqqlqilker
      121 fqaflngetq ivadeafcna vrsyyevflk sdrvarmvhs ggcsandfrd vfkkniekrv
      181 rslpeidgls ketvlsswla kydaiyrgee dfckqpnrma lsavselils keqlyemfqq
      241 ilgikklehq liynacqldn gdeqaaqirr eldgrlqlae qmarerkfpk fitrdmenmy
      301 ieelrssvnl lmanleslpv skggpefklq klkrsqnsaf ldigdenevq lsksdvvlsf
      361 tleivimevq glksvapnri vyctmevegg eklqtdqaea srpqwgtqgd fttthprpiv
      421 kvklftestg vlaledkelg rvvlyptsns pkspdvhkmi vpknsqdndl kiklavrmdk
      481 pphmkhcgyl yalgqkvwkr wkkryfvlvq vsqytfamcs yrekksepqe lmqlegytvd
      541 ytaphtglqg grmffsavke gdtvifasdd eqdrilwvqa myratgqsyk pvpasqaqkm
      601 npkggnvnid tsplytdrgq khgmdefisa npckfdhasl frllqrqtld hrlndsyscl
      661 gwfspgqvfv ldeycarygv rgchrhlcyl neliehseng svidptllhy sfafcashvh
      721 gnrpdgigtv sveekerfee ikerlcslle nqishfrycf pfgrpegalk atlsllervl
      781 mkdiatpipt eevkkvvrkc lekaalinyt rlteyakiea tgekdsetmn qatparklee
      841 vlhlaelcie vlqqneehhs eafawwpell aehaekflsl ysvdmdsvle tqpqdswdsf
      901 plfqllnnal rndtflcngk fhkhlqeifv pmvvryidlm essiaqsihr gleqeswqpv
      961 ksitnslpnv alpkvpslpv nlpqipsftt ptwmtslyds tngsatsedl fwkldalqmf
     1021 vfdlhwpepe fahhleqrlk lmatdmieac vkrtriafel klqkankstd lripsslctm
     1081 fnvlvdakkq taklcildgg qeqqyhskid dlieetvkei isllvskvvs vlegvlskls
     1141 rydegtffss lvsftvkaaa kyvdvpkpgm dladtyimfv rqnqdilrek vneemyiekl
     1201 fdqwysssmk vicvwladrl dlqlhiyqlk tlikivkkty rdfrlqgvle gtlnsktydt
     1261 vhsrltveea tvsvtdaggl qgitmkdsde eeg
//
LOCUS       XP_053921560            1291 aa            linear   VRT 09-MAR-2023
DEFINITION  calcium-dependent secretion activator 2 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053921560
VERSION     XP_053921560.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065585.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1291
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1291
                     /product="calcium-dependent secretion activator 2 isoform
                     X3"
                     /calculated_mol_wt=147484
     Region          361..444
                     /region_name="C2"
                     /note="Protein kinase C conserved region 2 (CalB);
                     smart00239"
                     /db_xref="CDD:214577"
     Region          477..596
                     /region_name="PH_CADPS"
                     /note="Ca2+-dependent activator protein (also called CAPS)
                     Pleckstrin homology (PH) domain; cd01234"
                     /db_xref="CDD:269940"
     Region          795..1241
                     /region_name="MUN"
                     /note="MUN domain; pfam06292"
                     /db_xref="CDD:461870"
     CDS             1..1291
                     /gene="CADPS2"
                     /coded_by="XM_054065585.1:90..3965"
                     /db_xref="GeneID:104061629"
ORIGIN      
        1 mldpssseee sdelveeerr dalvaavggs prslpsrdar greagaarag spspspsvls
       61 dgrdeqerlq reererrlrl qlyvfvarci ahpfnakqpt dmarrqqkln kqqlqilker
      121 fqaflngetq ivadeafcna vrsyyevflk sdrvarmvhs ggcsandfrd vfkkniekrv
      181 rslpeidgls ketvlsswla kydaiyrgee dfckqpnrma lsavselils keqlyemfqq
      241 ilgikklehq liynacqldn gdeqaaqirr eldgrlqlae qmarerkfpk fitrdmenmy
      301 ieelrssvnl lmanleslpv skggpefklq klkrsqnsaf ldigdenevq lsksdvvlsf
      361 tleivimevq glksvapnri vyctmevegg eklqtdqaea srpqwgtqgd fttthprpiv
      421 kvklftestg vlaledkelg rvvlyptsns pkspdvhkmi vpknsqdndl kiklavrmdk
      481 pphmkhcgyl yalgqkvwkr wkkryfvlvq vsqytfamcs yrekksepqe lmqlegytvd
      541 ytaphtglqg grmffsavke gdtvifasdd eqdrilwvqa myratgqsyk pvpasqaqkm
      601 npkggnvnid tsplytdrgq khgmdefisa npckfdhasl frllqrqtld hrlndsyscl
      661 gwfspgqvfv ldeycarygv rgchrhlcyl neliehseng svidptllhy sfafcashvh
      721 gnrpdgigtv sveekerfee ikerlcslle nqishfrycf pfgrpegalk atlsllervl
      781 mkdiatpipt eevkkvvrkc lekaalinyt rlteyakiee tmnqatpark leevlhlael
      841 cievlqqnee hhseafawwp ellaehaekf lslysvdmds vletqpqdsw dsfplfqlln
      901 nalrndtflc ngkfhkhlqe ifvpmvvryi dlmessiaqs ihrgleqesw qpvksitnsl
      961 pnvalpkvps lpvnlpqips fttptwmtsl ydstngsats edlfwkldal qmfvfdlhwp
     1021 epefahhleq rlklmatdmi eacvkrtria felklqkank stdlripssl ctmfnvlvda
     1081 kkqtaklcil dggqeftsqw qqyhskiddl ieetvkeiis llvskvvsvl egvlsklsry
     1141 degtffsslv sftvkaaaky vdvpkpgmdl adtyimfvrq nqdilrekvn eemyieklfd
     1201 qwysssmkvi cvwladrldl qlhiyqlktl ikivkktyrd frlqgvlegt lnsktydtvh
     1261 srltveeatv svtdagglqg itmkdsdeee g
//
LOCUS       XP_053921569            1258 aa            linear   VRT 09-MAR-2023
DEFINITION  calcium-dependent secretion activator 2 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053921569
VERSION     XP_053921569.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065594.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1258
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1258
                     /product="calcium-dependent secretion activator 2 isoform
                     X4"
                     /calculated_mol_wt=143848
     Region          361..444
                     /region_name="C2"
                     /note="Protein kinase C conserved region 2 (CalB);
                     smart00239"
                     /db_xref="CDD:214577"
     Region          477..596
                     /region_name="PH_CADPS"
                     /note="Ca2+-dependent activator protein (also called CAPS)
                     Pleckstrin homology (PH) domain; cd01234"
                     /db_xref="CDD:269940"
     Region          795..1208
                     /region_name="MUN"
                     /note="MUN domain; pfam06292"
                     /db_xref="CDD:461870"
     CDS             1..1258
                     /gene="CADPS2"
                     /coded_by="XM_054065594.1:90..3866"
                     /db_xref="GeneID:104061629"
ORIGIN      
        1 mldpssseee sdelveeerr dalvaavggs prslpsrdar greagaarag spspspsvls
       61 dgrdeqerlq reererrlrl qlyvfvarci ahpfnakqpt dmarrqqkln kqqlqilker
      121 fqaflngetq ivadeafcna vrsyyevflk sdrvarmvhs ggcsandfrd vfkkniekrv
      181 rslpeidgls ketvlsswla kydaiyrgee dfckqpnrma lsavselils keqlyemfqq
      241 ilgikklehq liynacqldn gdeqaaqirr eldgrlqlae qmarerkfpk fitrdmenmy
      301 ieelrssvnl lmanleslpv skggpefklq klkrsqnsaf ldigdenevq lsksdvvlsf
      361 tleivimevq glksvapnri vyctmevegg eklqtdqaea srpqwgtqgd fttthprpiv
      421 kvklftestg vlaledkelg rvvlyptsns pkspdvhkmi vpknsqdndl kiklavrmdk
      481 pphmkhcgyl yalgqkvwkr wkkryfvlvq vsqytfamcs yrekksepqe lmqlegytvd
      541 ytaphtglqg grmffsavke gdtvifasdd eqdrilwvqa myratgqsyk pvpasqaqkm
      601 npkggnvnid tsplytdrgq khgmdefisa npckfdhasl frllqrqtld hrlndsyscl
      661 gwfspgqvfv ldeycarygv rgchrhlcyl neliehseng svidptllhy sfafcashvh
      721 gnrpdgigtv sveekerfee ikerlcslle nqishfrycf pfgrpegalk atlsllervl
      781 mkdiatpipt eevkkvvrkc lekaalinyt rlteyakiea tgekdsetmn qatparklee
      841 vlhlaelcie vlqqneehhs eafawwpell aehaekflsl ysvdmdsvle tqpqdswdsf
      901 plfqllnnal rndtflcngk fhkhlqeifv pmvvryidlm essiaqsihr gleqeswqpv
      961 nngsatsedl fwkldalqmf vfdlhwpepe fahhleqrlk lmatdmieac vkrtriafel
     1021 klqkankstd lripsslctm fnvlvdakkq taklcildgg qeftsqwqqy hskiddliee
     1081 tvkeiisllv skvvsvlegv lsklsrydeg tffsslvsft vkaaakyvdv pkpgmdladt
     1141 yimfvrqnqd ilrekvneem yieklfdqwy sssmkvicvw ladrldlqlh iyqlktliki
     1201 vkktyrdfrl qgvlegtlns ktydtvhsrl tveeatvsvt dagglqgitm kdsdeeeg
//
LOCUS       XP_053921576            1253 aa            linear   VRT 09-MAR-2023
DEFINITION  calcium-dependent secretion activator 2 isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053921576
VERSION     XP_053921576.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065601.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1253
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1253
                     /product="calcium-dependent secretion activator 2 isoform
                     X5"
                     /calculated_mol_wt=143198
     Region          361..444
                     /region_name="C2"
                     /note="Protein kinase C conserved region 2 (CalB);
                     smart00239"
                     /db_xref="CDD:214577"
     Region          477..596
                     /region_name="PH_CADPS"
                     /note="Ca2+-dependent activator protein (also called CAPS)
                     Pleckstrin homology (PH) domain; cd01234"
                     /db_xref="CDD:269940"
     Region          795..1203
                     /region_name="MUN"
                     /note="MUN domain; pfam06292"
                     /db_xref="CDD:461870"
     CDS             1..1253
                     /gene="CADPS2"
                     /coded_by="XM_054065601.1:90..3851"
                     /db_xref="GeneID:104061629"
ORIGIN      
        1 mldpssseee sdelveeerr dalvaavggs prslpsrdar greagaarag spspspsvls
       61 dgrdeqerlq reererrlrl qlyvfvarci ahpfnakqpt dmarrqqkln kqqlqilker
      121 fqaflngetq ivadeafcna vrsyyevflk sdrvarmvhs ggcsandfrd vfkkniekrv
      181 rslpeidgls ketvlsswla kydaiyrgee dfckqpnrma lsavselils keqlyemfqq
      241 ilgikklehq liynacqldn gdeqaaqirr eldgrlqlae qmarerkfpk fitrdmenmy
      301 ieelrssvnl lmanleslpv skggpefklq klkrsqnsaf ldigdenevq lsksdvvlsf
      361 tleivimevq glksvapnri vyctmevegg eklqtdqaea srpqwgtqgd fttthprpiv
      421 kvklftestg vlaledkelg rvvlyptsns pkspdvhkmi vpknsqdndl kiklavrmdk
      481 pphmkhcgyl yalgqkvwkr wkkryfvlvq vsqytfamcs yrekksepqe lmqlegytvd
      541 ytaphtglqg grmffsavke gdtvifasdd eqdrilwvqa myratgqsyk pvpasqaqkm
      601 npkggnvnid tsplytdrgq khgmdefisa npckfdhasl frllqrqtld hrlndsyscl
      661 gwfspgqvfv ldeycarygv rgchrhlcyl neliehseng svidptllhy sfafcashvh
      721 gnrpdgigtv sveekerfee ikerlcslle nqishfrycf pfgrpegalk atlsllervl
      781 mkdiatpipt eevkkvvrkc lekaalinyt rlteyakiea tgekdsetmn qatparklee
      841 vlhlaelcie vlqqneehhs eafawwpell aehaekflsl ysvdmdsvle tqpqdswdsf
      901 plfqllnnal rndtflcngk fhkhlqeifv pmvvryidlm essiaqsihr gleqeswqpv
      961 nngsatsedl fwkldalqmf vfdlhwpepe fahhleqrlk lmatdmieac vkrtriafel
     1021 klqkankstd lripsslctm fnvlvdakkq taklcildgg qeqqyhskid dlieetvkei
     1081 isllvskvvs vlegvlskls rydegtffss lvsftvkaaa kyvdvpkpgm dladtyimfv
     1141 rqnqdilrek vneemyiekl fdqwysssmk vicvwladrl dlqlhiyqlk tlikivkkty
     1201 rdfrlqgvle gtlnsktydt vhsrltveea tvsvtdaggl qgitmkdsde eeg
//
LOCUS       XP_053921585            1251 aa            linear   VRT 09-MAR-2023
DEFINITION  calcium-dependent secretion activator 2 isoform X6 [Cuculus
            canorus].
ACCESSION   XP_053921585
VERSION     XP_053921585.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065610.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1251
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1251
                     /product="calcium-dependent secretion activator 2 isoform
                     X6"
                     /calculated_mol_wt=143159
     Region          361..444
                     /region_name="C2"
                     /note="Protein kinase C conserved region 2 (CalB);
                     smart00239"
                     /db_xref="CDD:214577"
     Region          477..596
                     /region_name="PH_CADPS"
                     /note="Ca2+-dependent activator protein (also called CAPS)
                     Pleckstrin homology (PH) domain; cd01234"
                     /db_xref="CDD:269940"
     Region          795..1201
                     /region_name="MUN"
                     /note="MUN domain; pfam06292"
                     /db_xref="CDD:461870"
     CDS             1..1251
                     /gene="CADPS2"
                     /coded_by="XM_054065610.1:90..3845"
                     /db_xref="GeneID:104061629"
ORIGIN      
        1 mldpssseee sdelveeerr dalvaavggs prslpsrdar greagaarag spspspsvls
       61 dgrdeqerlq reererrlrl qlyvfvarci ahpfnakqpt dmarrqqkln kqqlqilker
      121 fqaflngetq ivadeafcna vrsyyevflk sdrvarmvhs ggcsandfrd vfkkniekrv
      181 rslpeidgls ketvlsswla kydaiyrgee dfckqpnrma lsavselils keqlyemfqq
      241 ilgikklehq liynacqldn gdeqaaqirr eldgrlqlae qmarerkfpk fitrdmenmy
      301 ieelrssvnl lmanleslpv skggpefklq klkrsqnsaf ldigdenevq lsksdvvlsf
      361 tleivimevq glksvapnri vyctmevegg eklqtdqaea srpqwgtqgd fttthprpiv
      421 kvklftestg vlaledkelg rvvlyptsns pkspdvhkmi vpknsqdndl kiklavrmdk
      481 pphmkhcgyl yalgqkvwkr wkkryfvlvq vsqytfamcs yrekksepqe lmqlegytvd
      541 ytaphtglqg grmffsavke gdtvifasdd eqdrilwvqa myratgqsyk pvpasqaqkm
      601 npkggnvnid tsplytdrgq khgmdefisa npckfdhasl frllqrqtld hrlndsyscl
      661 gwfspgqvfv ldeycarygv rgchrhlcyl neliehseng svidptllhy sfafcashvh
      721 gnrpdgigtv sveekerfee ikerlcslle nqishfrycf pfgrpegalk atlsllervl
      781 mkdiatpipt eevkkvvrkc lekaalinyt rlteyakiee tmnqatpark leevlhlael
      841 cievlqqnee hhseafawwp ellaehaekf lslysvdmds vletqpqdsw dsfplfqlln
      901 nalrndtflc ngkfhkhlqe ifvpmvvryi dlmessiaqs ihrgleqesw qpvnngsats
      961 edlfwkldal qmfvfdlhwp epefahhleq rlklmatdmi eacvkrtria felklqkank
     1021 stdlripssl ctmfnvlvda kkqtaklcil dggqeftsqw qqyhskiddl ieetvkeiis
     1081 llvskvvsvl egvlsklsry degtffsslv sftvkaaaky vdvpkpgmdl adtyimfvrq
     1141 nqdilrekvn eemyieklfd qwysssmkvi cvwladrldl qlhiyqlktl ikivkktyrd
     1201 frlqgvlegt lnsktydtvh srltveeatv svtdagglqg itmkdsdeee g
//
LOCUS       XP_053921595            1246 aa            linear   VRT 09-MAR-2023
DEFINITION  calcium-dependent secretion activator 2 isoform X7 [Cuculus
            canorus].
ACCESSION   XP_053921595
VERSION     XP_053921595.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065620.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1246
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1246
                     /product="calcium-dependent secretion activator 2 isoform
                     X7"
                     /calculated_mol_wt=142509
     Region          361..444
                     /region_name="C2"
                     /note="Protein kinase C conserved region 2 (CalB);
                     smart00239"
                     /db_xref="CDD:214577"
     Region          477..596
                     /region_name="PH_CADPS"
                     /note="Ca2+-dependent activator protein (also called CAPS)
                     Pleckstrin homology (PH) domain; cd01234"
                     /db_xref="CDD:269940"
     Region          795..1196
                     /region_name="MUN"
                     /note="MUN domain; pfam06292"
                     /db_xref="CDD:461870"
     CDS             1..1246
                     /gene="CADPS2"
                     /coded_by="XM_054065620.1:90..3830"
                     /db_xref="GeneID:104061629"
ORIGIN      
        1 mldpssseee sdelveeerr dalvaavggs prslpsrdar greagaarag spspspsvls
       61 dgrdeqerlq reererrlrl qlyvfvarci ahpfnakqpt dmarrqqkln kqqlqilker
      121 fqaflngetq ivadeafcna vrsyyevflk sdrvarmvhs ggcsandfrd vfkkniekrv
      181 rslpeidgls ketvlsswla kydaiyrgee dfckqpnrma lsavselils keqlyemfqq
      241 ilgikklehq liynacqldn gdeqaaqirr eldgrlqlae qmarerkfpk fitrdmenmy
      301 ieelrssvnl lmanleslpv skggpefklq klkrsqnsaf ldigdenevq lsksdvvlsf
      361 tleivimevq glksvapnri vyctmevegg eklqtdqaea srpqwgtqgd fttthprpiv
      421 kvklftestg vlaledkelg rvvlyptsns pkspdvhkmi vpknsqdndl kiklavrmdk
      481 pphmkhcgyl yalgqkvwkr wkkryfvlvq vsqytfamcs yrekksepqe lmqlegytvd
      541 ytaphtglqg grmffsavke gdtvifasdd eqdrilwvqa myratgqsyk pvpasqaqkm
      601 npkggnvnid tsplytdrgq khgmdefisa npckfdhasl frllqrqtld hrlndsyscl
      661 gwfspgqvfv ldeycarygv rgchrhlcyl neliehseng svidptllhy sfafcashvh
      721 gnrpdgigtv sveekerfee ikerlcslle nqishfrycf pfgrpegalk atlsllervl
      781 mkdiatpipt eevkkvvrkc lekaalinyt rlteyakiee tmnqatpark leevlhlael
      841 cievlqqnee hhseafawwp ellaehaekf lslysvdmds vletqpqdsw dsfplfqlln
      901 nalrndtflc ngkfhkhlqe ifvpmvvryi dlmessiaqs ihrgleqesw qpvnngsats
      961 edlfwkldal qmfvfdlhwp epefahhleq rlklmatdmi eacvkrtria felklqkank
     1021 stdlripssl ctmfnvlvda kkqtaklcil dggqeqqyhs kiddlieetv keiisllvsk
     1081 vvsvlegvls klsrydegtf fsslvsftvk aaakyvdvpk pgmdladtyi mfvrqnqdil
     1141 rekvneemyi eklfdqwyss smkvicvwla drldlqlhiy qlktlikivk ktyrdfrlqg
     1201 vlegtlnskt ydtvhsrltv eeatvsvtda gglqgitmkd sdeeeg
//
LOCUS       XP_053921607            1286 aa            linear   VRT 09-MAR-2023
DEFINITION  calcium-dependent secretion activator 2 isoform X8 [Cuculus
            canorus].
ACCESSION   XP_053921607
VERSION     XP_053921607.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065632.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1286
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1286
                     /product="calcium-dependent secretion activator 2 isoform
                     X8"
                     /calculated_mol_wt=146834
     Region          361..444
                     /region_name="C2"
                     /note="Protein kinase C conserved region 2 (CalB);
                     smart00239"
                     /db_xref="CDD:214577"
     Region          477..596
                     /region_name="PH_CADPS"
                     /note="Ca2+-dependent activator protein (also called CAPS)
                     Pleckstrin homology (PH) domain; cd01234"
                     /db_xref="CDD:269940"
     Region          795..1236
                     /region_name="MUN"
                     /note="MUN domain; pfam06292"
                     /db_xref="CDD:461870"
     CDS             1..1286
                     /gene="CADPS2"
                     /coded_by="XM_054065632.1:90..3950"
                     /db_xref="GeneID:104061629"
ORIGIN      
        1 mldpssseee sdelveeerr dalvaavggs prslpsrdar greagaarag spspspsvls
       61 dgrdeqerlq reererrlrl qlyvfvarci ahpfnakqpt dmarrqqkln kqqlqilker
      121 fqaflngetq ivadeafcna vrsyyevflk sdrvarmvhs ggcsandfrd vfkkniekrv
      181 rslpeidgls ketvlsswla kydaiyrgee dfckqpnrma lsavselils keqlyemfqq
      241 ilgikklehq liynacqldn gdeqaaqirr eldgrlqlae qmarerkfpk fitrdmenmy
      301 ieelrssvnl lmanleslpv skggpefklq klkrsqnsaf ldigdenevq lsksdvvlsf
      361 tleivimevq glksvapnri vyctmevegg eklqtdqaea srpqwgtqgd fttthprpiv
      421 kvklftestg vlaledkelg rvvlyptsns pkspdvhkmi vpknsqdndl kiklavrmdk
      481 pphmkhcgyl yalgqkvwkr wkkryfvlvq vsqytfamcs yrekksepqe lmqlegytvd
      541 ytaphtglqg grmffsavke gdtvifasdd eqdrilwvqa myratgqsyk pvpasqaqkm
      601 npkggnvnid tsplytdrgq khgmdefisa npckfdhasl frllqrqtld hrlndsyscl
      661 gwfspgqvfv ldeycarygv rgchrhlcyl neliehseng svidptllhy sfafcashvh
      721 gnrpdgigtv sveekerfee ikerlcslle nqishfrycf pfgrpegalk atlsllervl
      781 mkdiatpipt eevkkvvrkc lekaalinyt rlteyakiee tmnqatpark leevlhlael
      841 cievlqqnee hhseafawwp ellaehaekf lslysvdmds vletqpqdsw dsfplfqlln
      901 nalrndtflc ngkfhkhlqe ifvpmvvryi dlmessiaqs ihrgleqesw qpvksitnsl
      961 pnvalpkvps lpvnlpqips fttptwmtsl ydstngsats edlfwkldal qmfvfdlhwp
     1021 epefahhleq rlklmatdmi eacvkrtria felklqkank stdlripssl ctmfnvlvda
     1081 kkqtaklcil dggqeqqyhs kiddlieetv keiisllvsk vvsvlegvls klsrydegtf
     1141 fsslvsftvk aaakyvdvpk pgmdladtyi mfvrqnqdil rekvneemyi eklfdqwyss
     1201 smkvicvwla drldlqlhiy qlktlikivk ktyrdfrlqg vlegtlnskt ydtvhsrltv
     1261 eeatvsvtda gglqgitmkd sdeeeg
//
LOCUS       XP_009561883             492 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: fez family zinc finger protein 1 [Cuculus
            canorus].
ACCESSION   XP_009561883
VERSION     XP_009561883.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563588.2
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561883.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..492
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..492
                     /product="LOW QUALITY PROTEIN: fez family zinc finger
                     protein 1"
                     /calculated_mol_wt=53723
     Region          260..280
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(265,267,269,271..272,275..276,279,293,295,299..300,
                     303..304,307,321,323,325,327..328,331..332,335)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          286..308
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          288..308
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          303..325
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          316..336
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          344..364
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          <366..422
                     /region_name="SFP1"
                     /note="Putative transcriptional repressor regulating G2/M
                     transition [Transcription / Cell division and chromosome
                     partitioning]; COG5189"
                     /db_xref="CDD:227516"
     Region          372..392
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          400..418
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275370"
     CDS             1..492
                     /gene="FEZF1"
                     /coded_by="XM_009563588.2:17..1495"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /db_xref="GeneID:104061630"
ORIGIN      
        1 mdnsghhtat kilatppare slsarsnmis tpkplafsie rimartpepr svpvpqllhg
       61 svakgdpkhp lhlnssipcm ipfvpvaydp lpkaavagae prkahldpss psfscgdlln
      121 calslkgdfp rdalplqqyk lvrprvvnhs sfhamgalcy fnrgdspchp sssvnihpva
      181 syflssplhp qpkaylaern klvlpavdky pagvafkdls qaqlqhymke saqilsekia
      241 yktsefsrgs psskpkvftc evcgkvfnah ynltrhmpvh tgarpfvckv cgkgfrqast
      301 lcrhkiihtq ekphkcnqcg kafnrsstln thtrihagyk pfvcefcgkg fhqkgnyknh
      361 klthsgekqf kcnicnkafh qvynltfhmh thndkkpftc ptcgkgfcrn fdlkkhvrkl
      421 hdsalglprp paelggpeqp pppxataagp aapavrgaep sptaslhapv krfcvlcsis
      481 pltfmglivs sf
//
LOCUS       XP_053921637             184 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related protein Rap-1b [Cuculus canorus].
ACCESSION   XP_053921637
VERSION     XP_053921637.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065662.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..184
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..184
                     /product="ras-related protein Rap-1b"
                     /calculated_mol_wt=20694
     Region          3..167
                     /region_name="Rap1"
                     /note="Rap1 family GTPase consists of Rap1a and Rap1b
                     isoforms; cd04175"
                     /db_xref="CDD:133375"
     Site            10..17
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:133375"
     Site            order(11..12,59..60)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133375"
     Site            order(12..18,28..30,32,34..35,60,116..117,119,147..149)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:133375"
     Site            order(17..18,32,34,40..41,54..55,57,59..60,149)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133375"
     Site            order(25,31,33,36..41)
                     /site_type="active"
                     /note="effector interaction site [active]"
                     /db_xref="CDD:133375"
     Site            33..40
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:133375"
     Site            35
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:133375"
     Site            57..60
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:133375"
     Site            59..77
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:133375"
     Site            116..119
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:133375"
     Site            147..149
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:133375"
     CDS             1..184
                     /gene="RAP1B"
                     /coded_by="XM_054065662.1:180..734"
                     /db_xref="GeneID:104061349"
ORIGIN      
        1 mreyklvvlg sggvgksalt vqfvqgifve kydptiedsy rkqvevdaqq cmleildtag
       61 teqftamrdl ymkngqgfal vysitaqstf ndlqdlreqi lrvkdtddvp milvgnkcdl
      121 edervvgkeq gqnlarqwnn caflessaks kinvneifyd lvrqinrktp vpgkarkkss
      181 cqll
//
LOCUS       XP_053921648             184 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related protein Rap-1b [Cuculus canorus].
ACCESSION   XP_053921648
VERSION     XP_053921648.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065673.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..184
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..184
                     /product="ras-related protein Rap-1b"
                     /calculated_mol_wt=20694
     Region          3..167
                     /region_name="Rap1"
                     /note="Rap1 family GTPase consists of Rap1a and Rap1b
                     isoforms; cd04175"
                     /db_xref="CDD:133375"
     Site            10..17
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:133375"
     Site            order(11..12,59..60)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133375"
     Site            order(12..18,28..30,32,34..35,60,116..117,119,147..149)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:133375"
     Site            order(17..18,32,34,40..41,54..55,57,59..60,149)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133375"
     Site            order(25,31,33,36..41)
                     /site_type="active"
                     /note="effector interaction site [active]"
                     /db_xref="CDD:133375"
     Site            33..40
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:133375"
     Site            35
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:133375"
     Site            57..60
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:133375"
     Site            59..77
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:133375"
     Site            116..119
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:133375"
     Site            147..149
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:133375"
     CDS             1..184
                     /gene="RAP1B"
                     /coded_by="XM_054065673.1:176..730"
                     /db_xref="GeneID:104061349"
ORIGIN      
        1 mreyklvvlg sggvgksalt vqfvqgifve kydptiedsy rkqvevdaqq cmleildtag
       61 teqftamrdl ymkngqgfal vysitaqstf ndlqdlreqi lrvkdtddvp milvgnkcdl
      121 edervvgkeq gqnlarqwnn caflessaks kinvneifyd lvrqinrktp vpgkarkkss
      181 cqll
//
LOCUS       XP_053921656             184 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related protein Rap-1b [Cuculus canorus].
ACCESSION   XP_053921656
VERSION     XP_053921656.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065681.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..184
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..184
                     /product="ras-related protein Rap-1b"
                     /calculated_mol_wt=20694
     Region          3..167
                     /region_name="Rap1"
                     /note="Rap1 family GTPase consists of Rap1a and Rap1b
                     isoforms; cd04175"
                     /db_xref="CDD:133375"
     Site            10..17
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:133375"
     Site            order(11..12,59..60)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133375"
     Site            order(12..18,28..30,32,34..35,60,116..117,119,147..149)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:133375"
     Site            order(17..18,32,34,40..41,54..55,57,59..60,149)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133375"
     Site            order(25,31,33,36..41)
                     /site_type="active"
                     /note="effector interaction site [active]"
                     /db_xref="CDD:133375"
     Site            33..40
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:133375"
     Site            35
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:133375"
     Site            57..60
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:133375"
     Site            59..77
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:133375"
     Site            116..119
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:133375"
     Site            147..149
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:133375"
     CDS             1..184
                     /gene="RAP1B"
                     /coded_by="XM_054065681.1:47..601"
                     /db_xref="GeneID:104061349"
ORIGIN      
        1 mreyklvvlg sggvgksalt vqfvqgifve kydptiedsy rkqvevdaqq cmleildtag
       61 teqftamrdl ymkngqgfal vysitaqstf ndlqdlreqi lrvkdtddvp milvgnkcdl
      121 edervvgkeq gqnlarqwnn caflessaks kinvneifyd lvrqinrktp vpgkarkkss
      181 cqll
//
LOCUS       XP_053921660            1019 aa            linear   VRT 09-MAR-2023
DEFINITION  centriole and centriolar satellite protein OFD1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053921660
VERSION     XP_053921660.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065685.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1019
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1019
                     /product="centriole and centriolar satellite protein OFD1
                     isoform X1"
                     /calculated_mol_wt=117364
     Region          75..100
                     /region_name="LisH_2"
                     /note="pfam16045"
                     /db_xref="CDD:464992"
     Region          204..>548
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..1019
                     /gene="OFD1"
                     /coded_by="XM_054065685.1:18..3077"
                     /db_xref="GeneID:104054894"
ORIGIN      
        1 mplggmtavg getlsrdelr krlyqtfkdr gvldtlktql rnqlihelmh pilsgkvrpq
       61 avpsddspll itasnslvad hlqrcgyeys lsvffpesgl ekkklwtmqd llqlmrinpk
      121 sslyksltsg tekenkgflm qilirlmehh lnketydtet qttsvpayre slaeklhlid
      181 eqfadsypqh qkyeslevkl hqyrkeienq lqeemrqkle hfkeveiaki kmeekvqtqk
      241 eiselrhele rthqakseal isreknaier lqkqqeieak evyaqrqsll kdiefirtre
      301 velkqrieaf eitqklqeek nkaiddalrr revtvkniee tydqklkael lkyqlelkee
      361 yivrtnkvte dekknkeqak llheeaiavn skkeelkqav srakeleldl esakaqillv
      421 nkqnqlltek lkevsdygll keeklelqvq nkllrqqlde trsenqhlrd klsqpsaehl
      481 acqvelrrve hsrklaldef eshrqilekq lqnevercaq lktqlldsea avrklnvqve
      541 elklqvkqtq aalenevyrn pkpslvdrsv ldftgdkilp hdiyvdsafl knqvmtdvtk
      601 vnavprvgyw qqvqpcsasp dsdlecmaqt rarikeleke aeyleeayrn yqhrvmqdaa
      661 asrtprniqs slllqcaisr pvlttqpell enntscqhsp lssprgekym krtgqvdvfk
      721 spltpphkga assrrlsstp vsklerdvsi kkisdgiggs ylassqqsvd qvfspiskph
      781 ilsssdsvss spssrgqrtr lhnqqtdkqd fsdipkpekl myedleepis speyqgdipe
      841 qcesdalhps gdivngnhvt atvpatatsl qdltvldqrq seeqnrevet nleeerkare
      901 erreteqqea lereqteaek lnkewiqdst kideekedkg erksensnsg aeddlkdptp
      961 nplekymrii qqrreqepan kdskreemge vsltegllss ekddsatgns hgdtdenfw
//
LOCUS       XP_053921667             971 aa            linear   VRT 09-MAR-2023
DEFINITION  centriole and centriolar satellite protein OFD1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053921667
VERSION     XP_053921667.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065692.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..971
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..971
                     /product="centriole and centriolar satellite protein OFD1
                     isoform X2"
                     /calculated_mol_wt=111882
     Region          27..52
                     /region_name="LisH_2"
                     /note="pfam16045"
                     /db_xref="CDD:464992"
     Region          156..>500
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..971
                     /gene="OFD1"
                     /coded_by="XM_054065692.1:233..3148"
                     /db_xref="GeneID:104054894"
ORIGIN      
        1 mhpilsgkvr pqavpsddsp llitasnslv adhlqrcgye yslsvffpes glekkklwtm
       61 qdllqlmrin pksslykslt sgtekenkgf lmqilirlme hhlnketydt etqttsvpay
      121 reslaeklhl ideqfadsyp qhqkyeslev klhqyrkeie nqlqeemrqk lehfkeveia
      181 kikmeekvqt qkeiselrhe lerthqakse alisreknai erlqkqqeie akevyaqrqs
      241 llkdiefirt revelkqrie afeitqklqe eknkaiddal rrrevtvkni eetydqklka
      301 ellkyqlelk eeyivrtnkv tedekknkeq akllheeaia vnskkeelkq avsrakelel
      361 dlesakaqil lvnkqnqllt eklkevsdyg llkeeklelq vqnkllrqql detrsenqhl
      421 rdklsqpsae hlacqvelrr vehsrklald efeshrqile kqlqneverc aqlktqllds
      481 eaavrklnvq veelklqvkq tqaalenevy rnpkpslvdr svldftgdki lphdiyvdsa
      541 flknqvmtdv tkvnavprvg ywqqvqpcsa spdsdlecma qtrarikele keaeyleeay
      601 rnyqhrvmqd aaasrtprni qsslllqcai srpvlttqpe llenntscqh splssprgek
      661 ymkrtgqvdv fkspltpphk gaassrrlss tpvsklerdv sikkisdgig gsylassqqs
      721 vdqvfspisk philsssdsv ssspssrgqr trlhnqqtdk qdfsdipkpe klmyedleep
      781 isspeyqgdi peqcesdalh psgdivngnh vtatvpatat slqdltvldq rqseeqnrev
      841 etnleeerka reerreteqq ealereqtea eklnkewiqd stkideeked kgerksensn
      901 sgaeddlkdp tpnplekymr iiqqrreqep ankdskreem gevsltegll ssekddsatg
      961 nshgdtdenf w
//
LOCUS       XP_053921676             318 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal membrane glycoprotein M6-b isoform X1 [Cuculus canorus].
ACCESSION   XP_053921676
VERSION     XP_053921676.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065701.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="neuronal membrane glycoprotein M6-b isoform X1"
                     /calculated_mol_wt=35227
     Region          53..288
                     /region_name="Myelin_PLP"
                     /note="Myelin proteolipid protein (PLP or lipophilin);
                     pfam01275"
                     /db_xref="CDD:460144"
     CDS             1..318
                     /gene="GPM6B"
                     /coded_by="XM_054065701.1:16..972"
                     /db_xref="GeneID:104054896"
ORIGIN      
        1 mfyfpevfva vitrpemeig ryhwmysssr phryhhvpal rgnisplgiq gcfeccikcl
       61 ggvpyaslva tilcfsgval fcgcghvalt gtvsileqhf sttasdhall seviqlmqyv
      121 iygiasfffl ygiillaegf yttsavkelh gefkttacgr cisgmfvflt yvlgvawlgv
      181 fgfsavpvfm fyniwstcev ikslqtnvtv pgdqicvdir qygiipwnav pgkacgpile
      241 nicntnefym syhlfivaca gagatvvali hflmilssnw aylkdaskmq ayqdikakee
      301 qelqdiqsrs keqlnsyt
//
LOCUS       XP_053921686             309 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal membrane glycoprotein M6-b isoform X2 [Cuculus canorus].
ACCESSION   XP_053921686
VERSION     XP_053921686.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065711.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..309
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..309
                     /product="neuronal membrane glycoprotein M6-b isoform X2"
                     /calculated_mol_wt=34127
     Region          44..279
                     /region_name="Myelin_PLP"
                     /note="Myelin proteolipid protein (PLP or lipophilin);
                     pfam01275"
                     /db_xref="CDD:460144"
     CDS             1..309
                     /gene="GPM6B"
                     /coded_by="XM_054065711.1:16..945"
                     /db_xref="GeneID:104054896"
ORIGIN      
        1 mvitrpemei gryhwmysss rphryhhvpa lrgnisplgi qgcfeccikc lggvpyaslv
       61 atilcfsgva lfcgcghval tgtvsileqh fsttasdhal lseviqlmqy viygiasfff
      121 lygiillaeg fyttsavkel hgefkttacg rcisgmfvfl tyvlgvawlg vfgfsavpvf
      181 mfyniwstce vikslqtnvt vpgdqicvdi rqygiipwna vpgkacgpil enicntnefy
      241 msyhlfivac agagatvval ihflmilssn waylkdaskm qayqdikake eqelqdiqsr
      301 skeqlnsyt
//
LOCUS       XP_053921695             302 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal membrane glycoprotein M6-b isoform X3 [Cuculus canorus].
ACCESSION   XP_053921695
VERSION     XP_053921695.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065720.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..302
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..302
                     /product="neuronal membrane glycoprotein M6-b isoform X3"
                     /calculated_mol_wt=33300
     Region          37..272
                     /region_name="Myelin_PLP"
                     /note="Myelin proteolipid protein (PLP or lipophilin);
                     pfam01275"
                     /db_xref="CDD:460144"
     CDS             1..302
                     /gene="GPM6B"
                     /coded_by="XM_054065720.1:52..960"
                     /db_xref="GeneID:104054896"
ORIGIN      
        1 meigryhwmy sssrphryhh vpalrgnisp lgiqgcfecc ikclggvpya slvatilcfs
       61 gvalfcgcgh valtgtvsil eqhfsttasd hallseviql mqyviygias ffflygiill
      121 aegfyttsav kelhgefktt acgrcisgmf vfltyvlgva wlgvfgfsav pvfmfyniws
      181 tcevikslqt nvtvpgdqic vdirqygiip wnavpgkacg pilenicntn efymsyhlfi
      241 vacagagatv valihflmil ssnwaylkda skmqayqdik akeeqelqdi qsrskeqlns
      301 yt
//
LOCUS       XP_053921704             295 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal membrane glycoprotein M6-b isoform X4 [Cuculus canorus].
ACCESSION   XP_053921704
VERSION     XP_053921704.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065729.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..295
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..295
                     /product="neuronal membrane glycoprotein M6-b isoform X4"
                     /calculated_mol_wt=32545
     Region          53..288
                     /region_name="Myelin_PLP"
                     /note="Myelin proteolipid protein (PLP or lipophilin);
                     pfam01275"
                     /db_xref="CDD:460144"
     CDS             1..295
                     /gene="GPM6B"
                     /coded_by="XM_054065729.1:16..903"
                     /db_xref="GeneID:104054896"
ORIGIN      
        1 mfyfpevfva vitrpemeig ryhwmysssr phryhhvpal rgnisplgiq gcfeccikcl
       61 ggvpyaslva tilcfsgval fcgcghvalt gtvsileqhf sttasdhall seviqlmqyv
      121 iygiasfffl ygiillaegf yttsavkelh gefkttacgr cisgmfvflt yvlgvawlgv
      181 fgfsavpvfm fyniwstcev ikslqtnvtv pgdqicvdir qygiipwnav pgkacgpile
      241 nicntnefym syhlfivaca gagatvvall iymmattyny avlkfksred cctkf
//
LOCUS       XP_053921713             288 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal membrane glycoprotein M6-b isoform X5 [Cuculus canorus].
ACCESSION   XP_053921713
VERSION     XP_053921713.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065738.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..288
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..288
                     /product="neuronal membrane glycoprotein M6-b isoform X5"
                     /calculated_mol_wt=31503
     Region          23..258
                     /region_name="Myelin_PLP"
                     /note="Myelin proteolipid protein (PLP or lipophilin);
                     pfam01275"
                     /db_xref="CDD:460144"
     CDS             1..288
                     /gene="GPM6B"
                     /coded_by="XM_054065738.1:95..961"
                     /db_xref="GeneID:104054896"
ORIGIN      
        1 mkpametaae enaeqsqekk gcfeccikcl ggvpyaslva tilcfsgval fcgcghvalt
       61 gtvsileqhf sttasdhall seviqlmqyv iygiasfffl ygiillaegf yttsavkelh
      121 gefkttacgr cisgmfvflt yvlgvawlgv fgfsavpvfm fyniwstcev ikslqtnvtv
      181 pgdqicvdir qygiipwnav pgkacgpile nicntnefym syhlfivaca gagatvvali
      241 hflmilssnw aylkdaskmq ayqdikakee qelqdiqsrs keqlnsyt
//
LOCUS       XP_053921721             278 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal membrane glycoprotein M6-b isoform X6 [Cuculus canorus].
ACCESSION   XP_053921721
VERSION     XP_053921721.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065746.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..278
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..278
                     /product="neuronal membrane glycoprotein M6-b isoform X6"
                     /calculated_mol_wt=30502
     Region          13..248
                     /region_name="Myelin_PLP"
                     /note="Myelin proteolipid protein (PLP or lipophilin);
                     pfam01275"
                     /db_xref="CDD:460144"
     CDS             1..278
                     /gene="GPM6B"
                     /coded_by="XM_054065746.1:16..852"
                     /db_xref="GeneID:104054896"
ORIGIN      
        1 mfyfpevfva gcfeccikcl ggvpyaslva tilcfsgval fcgcghvalt gtvsileqhf
       61 sttasdhall seviqlmqyv iygiasfffl ygiillaegf yttsavkelh gefkttacgr
      121 cisgmfvflt yvlgvawlgv fgfsavpvfm fyniwstcev ikslqtnvtv pgdqicvdir
      181 qygiipwnav pgkacgpile nicntnefym syhlfivaca gagatvvali hflmilssnw
      241 aylkdaskmq ayqdikakee qelqdiqsrs keqlnsyt
//
LOCUS       XP_053921726             269 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal membrane glycoprotein M6-b isoform X7 [Cuculus canorus].
ACCESSION   XP_053921726
VERSION     XP_053921726.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065751.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..269
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..269
                     /product="neuronal membrane glycoprotein M6-b isoform X7"
                     /calculated_mol_wt=29401
     Region          4..239
                     /region_name="Myelin_PLP"
                     /note="Myelin proteolipid protein (PLP or lipophilin);
                     pfam01275"
                     /db_xref="CDD:460144"
     CDS             1..269
                     /gene="GPM6B"
                     /coded_by="XM_054065751.1:153..962"
                     /db_xref="GeneID:104054896"
ORIGIN      
        1 mgcfeccikc lggvpyaslv atilcfsgva lfcgcghval tgtvsileqh fsttasdhal
       61 lseviqlmqy viygiasfff lygiillaeg fyttsavkel hgefkttacg rcisgmfvfl
      121 tyvlgvawlg vfgfsavpvf mfyniwstce vikslqtnvt vpgdqicvdi rqygiipwna
      181 vpgkacgpil enicntnefy msyhlfivac agagatvval ihflmilssn waylkdaskm
      241 qayqdikake eqelqdiqsr skeqlnsyt
//
LOCUS       XP_053921734             265 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal membrane glycoprotein M6-b isoform X8 [Cuculus canorus].
ACCESSION   XP_053921734
VERSION     XP_053921734.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065759.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..265
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..265
                     /product="neuronal membrane glycoprotein M6-b isoform X8"
                     /calculated_mol_wt=28821
     Region          23..258
                     /region_name="Myelin_PLP"
                     /note="Myelin proteolipid protein (PLP or lipophilin);
                     pfam01275"
                     /db_xref="CDD:460144"
     CDS             1..265
                     /gene="GPM6B"
                     /coded_by="XM_054065759.1:95..892"
                     /db_xref="GeneID:104054896"
ORIGIN      
        1 mkpametaae enaeqsqekk gcfeccikcl ggvpyaslva tilcfsgval fcgcghvalt
       61 gtvsileqhf sttasdhall seviqlmqyv iygiasfffl ygiillaegf yttsavkelh
      121 gefkttacgr cisgmfvflt yvlgvawlgv fgfsavpvfm fyniwstcev ikslqtnvtv
      181 pgdqicvdir qygiipwnav pgkacgpile nicntnefym syhlfivaca gagatvvall
      241 iymmattyny avlkfksred cctkf
//
LOCUS       XP_009554256             328 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal membrane glycoprotein M6-b isoform X9 [Cuculus canorus].
ACCESSION   XP_009554256
VERSION     XP_009554256.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009555961.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..328
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..328
                     /product="neuronal membrane glycoprotein M6-b isoform X9"
                     /calculated_mol_wt=36228
     Region          63..298
                     /region_name="Myelin_PLP"
                     /note="Myelin proteolipid protein (PLP or lipophilin);
                     pfam01275"
                     /db_xref="CDD:460144"
     CDS             1..328
                     /gene="GPM6B"
                     /coded_by="XM_009555961.2:16..1002"
                     /db_xref="GeneID:104054896"
ORIGIN      
        1 mkpametaae enaeqsqekk vitrpemeig ryhwmysssr phryhhvpal rgnisplgiq
       61 gcfeccikcl ggvpyaslva tilcfsgval fcgcghvalt gtvsileqhf sttasdhall
      121 seviqlmqyv iygiasfffl ygiillaegf yttsavkelh gefkttacgr cisgmfvflt
      181 yvlgvawlgv fgfsavpvfm fyniwstcev ikslqtnvtv pgdqicvdir qygiipwnav
      241 pgkacgpile nicntnefym syhlfivaca gagatvvali hflmilssnw aylkdaskmq
      301 ayqdikakee qelqdiqsrs keqlnsyt
//
LOCUS       XP_009554257             305 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal membrane glycoprotein M6-b isoform X10 [Cuculus canorus].
ACCESSION   XP_009554257
VERSION     XP_009554257.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009555962.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="neuronal membrane glycoprotein M6-b isoform X10"
                     /calculated_mol_wt=33546
     Region          63..298
                     /region_name="Myelin_PLP"
                     /note="Myelin proteolipid protein (PLP or lipophilin);
                     pfam01275"
                     /db_xref="CDD:460144"
     CDS             1..305
                     /gene="GPM6B"
                     /coded_by="XM_009555962.2:16..933"
                     /db_xref="GeneID:104054896"
ORIGIN      
        1 mkpametaae enaeqsqekk vitrpemeig ryhwmysssr phryhhvpal rgnisplgiq
       61 gcfeccikcl ggvpyaslva tilcfsgval fcgcghvalt gtvsileqhf sttasdhall
      121 seviqlmqyv iygiasfffl ygiillaegf yttsavkelh gefkttacgr cisgmfvflt
      181 yvlgvawlgv fgfsavpvfm fyniwstcev ikslqtnvtv pgdqicvdir qygiipwnav
      241 pgkacgpile nicntnefym syhlfivaca gagatvvall iymmattyny avlkfksred
      301 cctkf
//
LOCUS       XP_053921762             224 aa            linear   VRT 09-MAR-2023
DEFINITION  gem-associated protein 8 [Cuculus canorus].
ACCESSION   XP_053921762
VERSION     XP_053921762.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065787.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..224
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..224
                     /product="gem-associated protein 8"
                     /calculated_mol_wt=26666
     Region          6..224
                     /region_name="GEMIN8"
                     /note="Gemini of Cajal bodies-associated protein 8;
                     pfam15348"
                     /db_xref="CDD:464664"
     CDS             1..224
                     /gene="GEMIN8"
                     /coded_by="XM_054065787.1:155..829"
                     /db_xref="GeneID:104054897"
ORIGIN      
        1 medtepwysq rvyarywkhy dlamrwmhrh qkayrkames fyhqpwhpst ttpssrysdw
       61 dgndlphtqs ysssysphgr dqyrgaaqqy agahqgkedg dsemeeyses egeieydlsn
      121 meiteelrqf faqterhree lrrqqeleae dqyveadqdl hrrtersaqp pterpgerrm
      181 aemkklygaa aakiqameaa mqlifdrncd kkqpkywpii plkl
//
LOCUS       XP_053921775             201 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related protein Rab-9A [Cuculus canorus].
ACCESSION   XP_053921775
VERSION     XP_053921775.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065800.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..201
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..201
                     /product="ras-related protein Rab-9A"
                     /calculated_mol_wt=22720
     Region          4..172
                     /region_name="Rab9"
                     /note="Rab GTPase family 9 (Rab9); cd04116"
                     /db_xref="CDD:206697"
     Site            4..9
                     /site_type="other"
                     /note="Rab subfamily motif 1 (RabSF1)"
                     /db_xref="CDD:206697"
     Site            14..21
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206697"
     Site            order(17..22,32..34,38..39,65,124..125,127,154..156)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206697"
     Site            order(22..33,35..38)
                     /site_type="other"
                     /note="Rab subfamily motif 2 (RabSF2)"
                     /db_xref="CDD:206697"
     Site            order(32,37..45)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206697"
     Site            order(37,41..48,55,57)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206697"
     Site            39
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206697"
     Site            order(40,42..44,59,61,68..69,72,76,78..81,172)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206697"
     Site            order(40..41,43,61..62,69,71,73..75)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206697"
     Site            40..44
                     /site_type="other"
                     /note="Rab family motif 1 (RabF1)"
                     /db_xref="CDD:206697"
     Site            57..61
                     /site_type="other"
                     /note="Rab family motif 2 (RabF2)"
                     /db_xref="CDD:206697"
     Site            62..65
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206697"
     Site            order(65,67..77)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206697"
     Site            68..73
                     /site_type="other"
                     /note="Rab family motif 3 (RabF3)"
                     /db_xref="CDD:206697"
     Site            76..80
                     /site_type="other"
                     /note="Rab family motif 4 (RabF4)"
                     /db_xref="CDD:206697"
     Site            85..90
                     /site_type="other"
                     /note="Rab family motif 5 (RabF5)"
                     /db_xref="CDD:206697"
     Site            order(108..112,115..121)
                     /site_type="other"
                     /note="Rab subfamily motif 3 (RabSF3)"
                     /db_xref="CDD:206697"
     Site            124..127
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206697"
     Site            154..156
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206697"
     Site            170..172
                     /site_type="other"
                     /note="Rab subfamily motif 4 (RabSF4)"
                     /db_xref="CDD:206697"
     CDS             1..201
                     /gene="RAB9A"
                     /coded_by="XM_054065800.1:163..768"
                     /db_xref="GeneID:104054892"
ORIGIN      
        1 maakssllkv illgdggvgk sslmnryvtn kfdaqlfhti gveflnkele vdghfvtmqi
       61 wdtagqerfr slrtpfyrgs dcclltfsvd dsqsfqnlsn wkkefiyyad vkepesfpfv
      121 ilgnkvdide rqvsteeaqd wcrnngnhpy fetsakdatn vaaafeeavr rvlasedrsd
      181 hfiqtdtvnl hrkpkpsssc c
//
LOCUS       XP_053921787             140 aa            linear   VRT 09-MAR-2023
DEFINITION  trafficking protein particle complex subunit 2 [Cuculus canorus].
ACCESSION   XP_053921787
VERSION     XP_053921787.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065812.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..140
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..140
                     /product="trafficking protein particle complex subunit 2"
                     /calculated_mol_wt=16409
     Region          4..138
                     /region_name="TRAPPC2_sedlin"
                     /note="Trafficking protein particle complex subunit 2;
                     cd14825"
                     /db_xref="CDD:341429"
     Site            order(53..54,76..78,80,103,107,111)
                     /site_type="other"
                     /note="TRAPPC5 interface [polypeptide binding]"
                     /db_xref="CDD:341429"
     Site            order(108,111..114)
                     /site_type="other"
                     /note="TRAPPC3 interface [polypeptide binding]"
                     /db_xref="CDD:341429"
     CDS             1..140
                     /gene="TRAPPC2"
                     /coded_by="XM_054065812.1:59..481"
                     /db_xref="GeneID:104054893"
ORIGIN      
        1 msgsfyfviv ghhdnpifem eflppgkves kddhrhlnqf iahaaldlvd enmwlsnnmy
       61 lktvdkfnew fvsafvtagh mrfimlhdir qedgiknffn dvydlyikfa mnpfyelnsp
      121 irssaferkv qflgkkhlls
//
LOCUS       XP_053921795             140 aa            linear   VRT 09-MAR-2023
DEFINITION  trafficking protein particle complex subunit 2 [Cuculus canorus].
ACCESSION   XP_053921795
VERSION     XP_053921795.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065820.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..140
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..140
                     /product="trafficking protein particle complex subunit 2"
                     /calculated_mol_wt=16409
     Region          4..138
                     /region_name="TRAPPC2_sedlin"
                     /note="Trafficking protein particle complex subunit 2;
                     cd14825"
                     /db_xref="CDD:341429"
     Site            order(53..54,76..78,80,103,107,111)
                     /site_type="other"
                     /note="TRAPPC5 interface [polypeptide binding]"
                     /db_xref="CDD:341429"
     Site            order(108,111..114)
                     /site_type="other"
                     /note="TRAPPC3 interface [polypeptide binding]"
                     /db_xref="CDD:341429"
     CDS             1..140
                     /gene="TRAPPC2"
                     /coded_by="XM_054065820.1:59..481"
                     /db_xref="GeneID:104054893"
ORIGIN      
        1 msgsfyfviv ghhdnpifem eflppgkves kddhrhlnqf iahaaldlvd enmwlsnnmy
       61 lktvdkfnew fvsafvtagh mrfimlhdir qedgiknffn dvydlyikfa mnpfyelnsp
      121 irssaferkv qflgkkhlls
//
LOCUS       XP_053921806             442 aa            linear   VRT 09-MAR-2023
DEFINITION  general transcription factor IIE subunit 1 [Cuculus canorus].
ACCESSION   XP_053921806
VERSION     XP_053921806.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065831.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..442
                     /product="general transcription factor IIE subunit 1"
                     /calculated_mol_wt=49782
     Region          28..175
                     /region_name="TFIIE"
                     /note="Transcription initiation factor IIE; smart00531"
                     /db_xref="CDD:128804"
     Region          <394..442
                     /region_name="TFIIE-A_C"
                     /note="C-terminal general transcription factor TFIIE
                     alpha; pfam11521"
                     /db_xref="CDD:463287"
     CDS             1..442
                     /gene="GTF2E1"
                     /coded_by="XM_054065831.1:184..1512"
                     /db_xref="GeneID:104055820"
ORIGIN      
        1 mtdpdvltev paalkrlaky vvrgfygieh alaldilirn pcvkeedmle llkfdrkqlr
       61 avlntlkgdk fikcrmrvet apdgkttrhn yyfinyhllv nvvkykldhm rrrietderd
      121 stnrasfkcp icfstftdle anqlfdprtg tfrctfcete veedesampk kdartlvarf
      181 neqiepiyal lretedvnla heilepepte ipalkqsker aagtgsgtaa glagghhrea
      241 wttkgpsyed lytqnvvism edqedlnrsa gegkpvrerp iwlrestvqg aydpdeikdg
      301 srdldafqer eesraalddn eevmrallih ekktpsasav tiggaaplss anasdseset
      361 sesedesppr ppatatttyg ledededeef evvaedptvt vagrphsysq vsqrpelvaq
      421 mtpeekevyi amgrrmfedm fd
//
LOCUS       XP_053921816             442 aa            linear   VRT 09-MAR-2023
DEFINITION  general transcription factor IIE subunit 1 [Cuculus canorus].
ACCESSION   XP_053921816
VERSION     XP_053921816.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065841.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..442
                     /product="general transcription factor IIE subunit 1"
                     /calculated_mol_wt=49782
     Region          28..175
                     /region_name="TFIIE"
                     /note="Transcription initiation factor IIE; smart00531"
                     /db_xref="CDD:128804"
     Region          <394..442
                     /region_name="TFIIE-A_C"
                     /note="C-terminal general transcription factor TFIIE
                     alpha; pfam11521"
                     /db_xref="CDD:463287"
     CDS             1..442
                     /gene="GTF2E1"
                     /coded_by="XM_054065841.1:150..1478"
                     /db_xref="GeneID:104055820"
ORIGIN      
        1 mtdpdvltev paalkrlaky vvrgfygieh alaldilirn pcvkeedmle llkfdrkqlr
       61 avlntlkgdk fikcrmrvet apdgkttrhn yyfinyhllv nvvkykldhm rrrietderd
      121 stnrasfkcp icfstftdle anqlfdprtg tfrctfcete veedesampk kdartlvarf
      181 neqiepiyal lretedvnla heilepepte ipalkqsker aagtgsgtaa glagghhrea
      241 wttkgpsyed lytqnvvism edqedlnrsa gegkpvrerp iwlrestvqg aydpdeikdg
      301 srdldafqer eesraalddn eevmrallih ekktpsasav tiggaaplss anasdseset
      361 sesedesppr ppatatttyg ledededeef evvaedptvt vagrphsysq vsqrpelvaq
      421 mtpeekevyi amgrrmfedm fd
//
LOCUS       XP_053921826             442 aa            linear   VRT 09-MAR-2023
DEFINITION  general transcription factor IIE subunit 1 [Cuculus canorus].
ACCESSION   XP_053921826
VERSION     XP_053921826.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065851.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..442
                     /product="general transcription factor IIE subunit 1"
                     /calculated_mol_wt=49782
     Region          28..175
                     /region_name="TFIIE"
                     /note="Transcription initiation factor IIE; smart00531"
                     /db_xref="CDD:128804"
     Region          <394..442
                     /region_name="TFIIE-A_C"
                     /note="C-terminal general transcription factor TFIIE
                     alpha; pfam11521"
                     /db_xref="CDD:463287"
     CDS             1..442
                     /gene="GTF2E1"
                     /coded_by="XM_054065851.1:54..1382"
                     /db_xref="GeneID:104055820"
ORIGIN      
        1 mtdpdvltev paalkrlaky vvrgfygieh alaldilirn pcvkeedmle llkfdrkqlr
       61 avlntlkgdk fikcrmrvet apdgkttrhn yyfinyhllv nvvkykldhm rrrietderd
      121 stnrasfkcp icfstftdle anqlfdprtg tfrctfcete veedesampk kdartlvarf
      181 neqiepiyal lretedvnla heilepepte ipalkqsker aagtgsgtaa glagghhrea
      241 wttkgpsyed lytqnvvism edqedlnrsa gegkpvrerp iwlrestvqg aydpdeikdg
      301 srdldafqer eesraalddn eevmrallih ekktpsasav tiggaaplss anasdseset
      361 sesedesppr ppatatttyg ledededeef evvaedptvt vagrphsysq vsqrpelvaq
      421 mtpeekevyi amgrrmfedm fd
//
LOCUS       XP_053921840             236 aa            linear   VRT 09-MAR-2023
DEFINITION  rab-like protein 3 [Cuculus canorus].
ACCESSION   XP_053921840
VERSION     XP_053921840.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065865.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..236
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..236
                     /product="rab-like protein 3"
                     /calculated_mol_wt=26199
     Region          7..210
                     /region_name="RabL3"
                     /note="Rab GTPase-like family 3 (Rab-like3); cd04102"
                     /db_xref="CDD:206689"
     Site            13..20
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206689"
     Site            order(15..21,37..38,69,147..148,150,182)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206689"
     Site            order(37..39,42..45)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206689"
     Site            38
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206689"
     Site            order(39,42..43,63,65,89)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206689"
     Site            order(39,42,65..66)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206689"
     Site            order(42..47,61)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206689"
     Site            66..69
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206689"
     Site            69
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206689"
     Site            147..150
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206689"
     Site            182..184
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206689"
     CDS             1..236
                     /gene="RABL3"
                     /coded_by="XM_054065865.1:108..818"
                     /db_xref="GeneID:104055865"
ORIGIN      
        1 maaldrvkvl vlgdsgvgks slvhllchnq vlgnpswtvg csvdvrihdy kegtpeekty
       61 yielwdvggs vgsatsvkst ravfynllng iilvhdltnk kssqnlyrws lealnrdvap
      121 tgvlvtngdy dreqfadnqi pllvigtkld qipetkrnev ltrtaflaed fnaeeinldc
      181 tnprylaags snavklsrff dkviekryfl rdgnqipgfs erkrfgggtl kslhyd
//
LOCUS       XP_053921853            1046 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger and BTB domain-containing protein 11 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053921853
VERSION     XP_053921853.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065878.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1046
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1046
                     /product="zinc finger and BTB domain-containing protein 11
                     isoform X1"
                     /calculated_mol_wt=118677
     Region          69..120
                     /region_name="Integrase_H2C2"
                     /note="Integrase zinc binding domain; pfam17921"
                     /db_xref="CDD:465569"
     Region          195..312
                     /region_name="BTB_POZ_ZBTB11"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 11 (ZBTB11); cd18202"
                     /db_xref="CDD:349511"
     Region          562..582
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275370"
     Region          590..610
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          641..661
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          <658..743
                     /region_name="SFP1"
                     /note="Putative transcriptional repressor regulating G2/M
                     transition [Transcription / Cell division and chromosome
                     partitioning]; COG5189"
                     /db_xref="CDD:227516"
     Region          669..689
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(674,676,678,680..681,684..685,688,702,704,708..709,
                     712..713,716,730,732,734,736..737,740..741,744)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          697..717
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          725..745
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          756..776
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          768..792
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          784..804
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          812..829
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          848..868
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(853,855,857,859..860,863..864,867,881,883,887..888,
                     891..892,895,909,911,913,915..916,919..920,924)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          876..896
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          888..911
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          904..925
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..1046
                     /gene="ZBTB11"
                     /coded_by="XM_054065878.1:161..3301"
                     /db_xref="GeneID:104054275"
ORIGIN      
        1 msseesylai lryltnerep yapgtegnak rkirkaaacy vvrggtlfyq rrqrdqqrfa
       61 elevvlqaer rrgliraahl apdgahrtrl qtwqglsqky wwrgilkqvk dyikecskcq
      121 ekldrsrsls dpsemleelg ldakshedsn etddelsnta sipaaspkpv kkkpiakhel
      181 vfvdskglvk qssskhclsv lkqlnqqrls nqfcdvtlli egeeyrahks vlaanseyfr
      241 elfiekgavs sheavvdlsg fckssflpll efaytseltf dfcsmaevam larhlfmsev
      301 leicenvhkq meekqitvyq kgdiqtvest qnlveqteae mhpvdgaeqp elsagevpva
      361 vngalssagp eetaapqpdl llpepakptp ddllkpvkqc ettekyvkie llesisnstv
      421 slteaeqsav eamdtrsqsd aeinqnesgk anvdtaseds setlkqkhgm hsteqsisis
      481 qpeslassqd dtyksklrqr svseggyirl hkgiekklqn rktnpksaiq qvamklvqrg
      541 kkmkqpkret tenneeeaqh kctecgmvfq rryalimhtl kherskdykc plckkefqyg
      601 aslrahlvrh twktevnspa anaeetsvss vkgrtkrefi cdicgrtlpk lyslrihmlk
      661 htgvkphack vcgktftykh glkmhlalhe vqkqfkcdlc eksfvtkrsl qehmsihtge
      721 skylcsicgk sfhrasglsk hikkhqpkpe vrgyqctqce ksfyeardlq qhmnkhlgvk
      781 pfqcqfcgkc yswkkdwysh vkshsvtdpy rcnicgkefy ekalyrrhvq kathgkkgra
      841 kqnlervceh cgrkftqlre yrrhmnnheg vkpfecltcg vawadarslk rhvrthtger
      901 pyvcpvcnea yidartlrkh mtkfhrdyvp ckimlekdtl qfhnqgtqve haisilaadm
      961 qeqeteisvg ggeietvvvt getleaieav aateectsvs tlsdqsimqv vnyvlaqqqg
     1021 qkmaevtqai etvevevahv tkteqm
//
LOCUS       XP_053921860             912 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger and BTB domain-containing protein 11 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053921860
VERSION     XP_053921860.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065885.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..912
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..912
                     /product="zinc finger and BTB domain-containing protein 11
                     isoform X2"
                     /calculated_mol_wt=102977
     Region          61..178
                     /region_name="BTB_POZ_ZBTB11"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 11 (ZBTB11); cd18202"
                     /db_xref="CDD:349511"
     Region          428..448
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275370"
     Region          456..476
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          507..527
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          <524..609
                     /region_name="SFP1"
                     /note="Putative transcriptional repressor regulating G2/M
                     transition [Transcription / Cell division and chromosome
                     partitioning]; COG5189"
                     /db_xref="CDD:227516"
     Region          535..555
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(540,542,544,546..547,550..551,554,568,570,574..575,
                     578..579,582,596,598,600,602..603,606..607,610)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          563..583
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          591..611
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          622..642
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          634..658
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          650..670
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          678..695
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          714..734
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(719,721,723,725..726,729..730,733,747,749,753..754,
                     757..758,761,775,777,779,781..782,785..786,790)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          742..762
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          754..777
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          770..791
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..912
                     /gene="ZBTB11"
                     /coded_by="XM_054065885.1:1593..4331"
                     /db_xref="GeneID:104054275"
ORIGIN      
        1 mleelgldak shedsnetdd elsntasipa aspkpvkkkp iakhelvfvd skglvkqsss
       61 khclsvlkql nqqrlsnqfc dvtlliegee yrahksvlaa nseyfrelfi ekgavsshea
      121 vvdlsgfcks sflpllefay tseltfdfcs maevamlarh lfmsevleic envhkqmeek
      181 qitvyqkgdi qtvestqnlv eqteaemhpv dgaeqpelsa gevpvavnga lssagpeeta
      241 apqpdlllpe pakptpddll kpvkqcette kyvkielles isnstvslte aeqsaveamd
      301 trsqsdaein qnesgkanvd tasedssetl kqkhgmhste qsisisqpes lassqddtyk
      361 sklrqrsvse ggyirlhkgi ekklqnrktn pksaiqqvam klvqrgkkmk qpkrettenn
      421 eeeaqhkcte cgmvfqrrya limhtlkher skdykcplck kefqygaslr ahlvrhtwkt
      481 evnspaanae etsvssvkgr tkreficdic grtlpklysl rihmlkhtgv kphackvcgk
      541 tftykhglkm hlalhevqkq fkcdlceksf vtkrslqehm sihtgeskyl csicgksfhr
      601 asglskhikk hqpkpevrgy qctqceksfy eardlqqhmn khlgvkpfqc qfcgkcyswk
      661 kdwyshvksh svtdpyrcni cgkefyekal yrrhvqkath gkkgrakqnl ervcehcgrk
      721 ftqlreyrrh mnnhegvkpf ecltcgvawa darslkrhvr thtgerpyvc pvcneayida
      781 rtlrkhmtkf hrdyvpckim lekdtlqfhn qgtqvehais ilaadmqeqe teisvgggei
      841 etvvvtgetl eaieavaate ectsvstlsd qsimqvvnyv laqqqgqkma evtqaietve
      901 vevahvtkte qm
//
LOCUS       XP_053921868             912 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger and BTB domain-containing protein 11 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053921868
VERSION     XP_053921868.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065893.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..912
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..912
                     /product="zinc finger and BTB domain-containing protein 11
                     isoform X2"
                     /calculated_mol_wt=102977
     Region          61..178
                     /region_name="BTB_POZ_ZBTB11"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 11 (ZBTB11); cd18202"
                     /db_xref="CDD:349511"
     Region          428..448
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275370"
     Region          456..476
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          507..527
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          <524..609
                     /region_name="SFP1"
                     /note="Putative transcriptional repressor regulating G2/M
                     transition [Transcription / Cell division and chromosome
                     partitioning]; COG5189"
                     /db_xref="CDD:227516"
     Region          535..555
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(540,542,544,546..547,550..551,554,568,570,574..575,
                     578..579,582,596,598,600,602..603,606..607,610)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          563..583
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          591..611
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          622..642
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          634..658
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          650..670
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          678..695
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          714..734
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(719,721,723,725..726,729..730,733,747,749,753..754,
                     757..758,761,775,777,779,781..782,785..786,790)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          742..762
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          754..777
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          770..791
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..912
                     /gene="ZBTB11"
                     /coded_by="XM_054065893.1:761..3499"
                     /db_xref="GeneID:104054275"
ORIGIN      
        1 mleelgldak shedsnetdd elsntasipa aspkpvkkkp iakhelvfvd skglvkqsss
       61 khclsvlkql nqqrlsnqfc dvtlliegee yrahksvlaa nseyfrelfi ekgavsshea
      121 vvdlsgfcks sflpllefay tseltfdfcs maevamlarh lfmsevleic envhkqmeek
      181 qitvyqkgdi qtvestqnlv eqteaemhpv dgaeqpelsa gevpvavnga lssagpeeta
      241 apqpdlllpe pakptpddll kpvkqcette kyvkielles isnstvslte aeqsaveamd
      301 trsqsdaein qnesgkanvd tasedssetl kqkhgmhste qsisisqpes lassqddtyk
      361 sklrqrsvse ggyirlhkgi ekklqnrktn pksaiqqvam klvqrgkkmk qpkrettenn
      421 eeeaqhkcte cgmvfqrrya limhtlkher skdykcplck kefqygaslr ahlvrhtwkt
      481 evnspaanae etsvssvkgr tkreficdic grtlpklysl rihmlkhtgv kphackvcgk
      541 tftykhglkm hlalhevqkq fkcdlceksf vtkrslqehm sihtgeskyl csicgksfhr
      601 asglskhikk hqpkpevrgy qctqceksfy eardlqqhmn khlgvkpfqc qfcgkcyswk
      661 kdwyshvksh svtdpyrcni cgkefyekal yrrhvqkath gkkgrakqnl ervcehcgrk
      721 ftqlreyrrh mnnhegvkpf ecltcgvawa darslkrhvr thtgerpyvc pvcneayida
      781 rtlrkhmtkf hrdyvpckim lekdtlqfhn qgtqvehais ilaadmqeqe teisvgggei
      841 etvvvtgetl eaieavaate ectsvstlsd qsimqvvnyv laqqqgqkma evtqaietve
      901 vevahvtkte qm
//
LOCUS       XP_009553546             863 aa            linear   VRT 09-MAR-2023
DEFINITION  centrosomal protein of 97 kDa isoform X1 [Cuculus canorus].
ACCESSION   XP_009553546
VERSION     XP_009553546.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009555251.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009553546.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..863
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..863
                     /product="centrosomal protein of 97 kDa isoform X1"
                     /calculated_mol_wt=94972
     Region          46..250
                     /region_name="PPP1R42"
                     /note="protein phosphatase 1 regulatory subunit 42;
                     cl42388"
                     /db_xref="CDD:455733"
     Region          47..67
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          68..89
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          90..111
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          112..133
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          134..179
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          180..204
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          547..>569
                     /region_name="IQCD"
                     /note="IQ (isoleucine-glutamine) motif containing D
                     (IQCD); cd23767"
                     /db_xref="CDD:467745"
     CDS             1..863
                     /gene="CEP97"
                     /coded_by="XM_009555251.2:14..2605"
                     /db_xref="GeneID:104054277"
ORIGIN      
        1 mergarsgag aseaefapgp vrglvvnwsg qglqklgptl pcdadthtli ldknqiikle
       61 hlekcrnlvq lsvannrlvr mmgvakltkl rvlnlphnsi gyveglkdlv hlewlnlagn
      121 nlkaieqinc cvslqhldls dnniaqlgdl skltslktll lhgniitslr tapvclpqnl
      181 tvlslaenei rdlnevsfla clhqleqlsv mnnpcvmatp svpafdyrpy ivswclnlkv
      241 ldgyvisqke slkaewlysq gkgrsyrpgq hvqlvqylat vcplistygl qteedaklek
      301 ilskqrlhqr qlmhqnqneg apasstpnkt lpvayehssp aqppqivles epiiqknswv
      361 gpsvnddhsy avkntflper sfqkelyled iqvdedklns sllssestfm pvasglspvs
      421 ptsdlklhgi nlsledaddt vfecvrdvns geiankqetl citredcnrg vesertqenv
      481 kesmllpstd pvtssltant gdssassedr ilhsqpstsa gaesgvmtlc pdqmagessd
      541 sltvvaaele rmtkaatklq acwrgfytrn yhprakevry eirlnrmqeh iiclsdeiek
      601 lrqereedki qrlvqeeavr flwnqvkslq qwqlsvtqns gatwqpgils annfcpseps
      661 iqsfileqet ppdvsaaclv pasdilqvks lsrfpdsgfh tsmadqthgg dlcssekslt
      721 ermesslsve tvkqcdnsvs syssdveddh gesgqskess sneqdnrliq qylksvqqle
      781 eadegsncnd etggcwppia vsaesqesst davsvdllqd tsspargemg qtpescklns
      841 givegkqtdc dssfqmlhvg iav
//
LOCUS       XP_053921885             857 aa            linear   VRT 09-MAR-2023
DEFINITION  centrosomal protein of 97 kDa isoform X2 [Cuculus canorus].
ACCESSION   XP_053921885
VERSION     XP_053921885.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065910.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..857
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..857
                     /product="centrosomal protein of 97 kDa isoform X2"
                     /calculated_mol_wt=94160
     Region          40..244
                     /region_name="PPP1R42"
                     /note="protein phosphatase 1 regulatory subunit 42;
                     cl42388"
                     /db_xref="CDD:455733"
     Region          41..61
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          62..83
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          84..105
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          106..127
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          128..173
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          174..198
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          541..>563
                     /region_name="IQCD"
                     /note="IQ (isoleucine-glutamine) motif containing D
                     (IQCD); cd23767"
                     /db_xref="CDD:467745"
     CDS             1..857
                     /gene="CEP97"
                     /coded_by="XM_054065910.1:198..2771"
                     /db_xref="GeneID:104054277"
ORIGIN      
        1 magmvaasea alaagaglvv nwsgqglqkl gptlpcdadt htlildknqi iklehlekcr
       61 nlvqlsvann rlvrmmgvak ltklrvlnlp hnsigyvegl kdlvhlewln lagnnlkaie
      121 qinccvslqh ldlsdnniaq lgdlskltsl ktlllhgnii tslrtapvcl pqnltvlsla
      181 eneirdlnev sflaclhqle qlsvmnnpcv matpsvpafd yrpyivswcl nlkvldgyvi
      241 sqkeslkaew lysqgkgrsy rpgqhvqlvq ylatvcplis tyglqteeda klekilskqr
      301 lhqrqlmhqn qnegapasst pnktlpvaye hsspaqppqi vlesepiiqk nswvgpsvnd
      361 dhsyavkntf lpersfqkel ylediqvded klnssllsse stfmpvasgl spvsptsdlk
      421 lhginlsled addtvfecvr dvnsgeiank qetlcitred cnrgvesert qenvkesmll
      481 pstdpvtssl tantgdssas sedrilhsqp stsagaesgv mtlcpdqmag essdsltvva
      541 aelermtkaa tklqacwrgf ytrnyhprak evryeirlnr mqehiiclsd eieklrqere
      601 edkiqrlvqe eavrflwnqv kslqqwqlsv tqnsgatwqp gilsannfcp sepsiqsfil
      661 eqetppdvsa aclvpasdil qvkslsrfpd sgfhtsmadq thggdlcsse ksltermess
      721 lsvetvkqcd nsvssyssdv eddhgesgqs kesssneqdn rliqqylksv qqleeadegs
      781 ncndetggcw ppiavsaesq esstdavsvd llqdtsspar gemgqtpesc klnsgivegk
      841 qtdcdssfqm lhvgiav
//
LOCUS       XP_053921896             838 aa            linear   VRT 09-MAR-2023
DEFINITION  centrosomal protein of 97 kDa isoform X3 [Cuculus canorus].
ACCESSION   XP_053921896
VERSION     XP_053921896.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065921.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..838
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..838
                     /product="centrosomal protein of 97 kDa isoform X3"
                     /calculated_mol_wt=92344
     Region          46..250
                     /region_name="PPP1R42"
                     /note="protein phosphatase 1 regulatory subunit 42;
                     cl42388"
                     /db_xref="CDD:455733"
     Region          47..67
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          68..89
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          90..111
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          112..133
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          134..179
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          180..204
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          547..>569
                     /region_name="IQCD"
                     /note="IQ (isoleucine-glutamine) motif containing D
                     (IQCD); cd23767"
                     /db_xref="CDD:467745"
     CDS             1..838
                     /gene="CEP97"
                     /coded_by="XM_054065921.1:14..2530"
                     /db_xref="GeneID:104054277"
ORIGIN      
        1 mergarsgag aseaefapgp vrglvvnwsg qglqklgptl pcdadthtli ldknqiikle
       61 hlekcrnlvq lsvannrlvr mmgvakltkl rvlnlphnsi gyveglkdlv hlewlnlagn
      121 nlkaieqinc cvslqhldls dnniaqlgdl skltslktll lhgniitslr tapvclpqnl
      181 tvlslaenei rdlnevsfla clhqleqlsv mnnpcvmatp svpafdyrpy ivswclnlkv
      241 ldgyvisqke slkaewlysq gkgrsyrpgq hvqlvqylat vcplistygl qteedaklek
      301 ilskqrlhqr qlmhqnqneg apasstpnkt lpvayehssp aqppqivles epiiqknswv
      361 gpsvnddhsy avkntflper sfqkelyled iqvdedklns sllssestfm pvasglspvs
      421 ptsdlklhgi nlsledaddt vfecvrdvns geiankqetl citredcnrg vesertqenv
      481 kesmllpstd pvtssltant gdssassedr ilhsqpstsa gaesgvmtlc pdqmagessd
      541 sltvvaaele rmtkaatklq acwrgfytrn yhprakevry eirlnrmqeh iiclsdeiek
      601 lrqereedki qrlvqeeavr flwnqvkslq qwqlsvtqns gatwqpgils annfcpseps
      661 iqsfileqet ppdvsaaclv pasdilqvks lsrfpdsgfh tsmadqthgg dlcssekslt
      721 ermesslsve tvkqcdnsvs syssdveddh gesgqskess sneqdnrliq qylksvqqle
      781 eadegsncnd etggcwppia vsaesqesst davsvdllqd tsspargktq ngtnssly
//
LOCUS       XP_053921907             783 aa            linear   VRT 09-MAR-2023
DEFINITION  centrosomal protein of 97 kDa isoform X4 [Cuculus canorus].
ACCESSION   XP_053921907
VERSION     XP_053921907.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065932.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..783
                     /product="centrosomal protein of 97 kDa isoform X4"
                     /calculated_mol_wt=86330
     Region          <3..170
                     /region_name="PPP1R42"
                     /note="protein phosphatase 1 regulatory subunit 42;
                     cl42388"
                     /db_xref="CDD:455733"
     Region          10..31
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          32..53
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          54..99
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          100..124
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          467..>489
                     /region_name="IQCD"
                     /note="IQ (isoleucine-glutamine) motif containing D
                     (IQCD); cd23767"
                     /db_xref="CDD:467745"
     CDS             1..783
                     /gene="CEP97"
                     /coded_by="XM_054065932.1:421..2772"
                     /db_xref="GeneID:104054277"
ORIGIN      
        1 mmgvakltkl rvlnlphnsi gyveglkdlv hlewlnlagn nlkaieqinc cvslqhldls
       61 dnniaqlgdl skltslktll lhgniitslr tapvclpqnl tvlslaenei rdlnevsfla
      121 clhqleqlsv mnnpcvmatp svpafdyrpy ivswclnlkv ldgyvisqke slkaewlysq
      181 gkgrsyrpgq hvqlvqylat vcplistygl qteedaklek ilskqrlhqr qlmhqnqneg
      241 apasstpnkt lpvayehssp aqppqivles epiiqknswv gpsvnddhsy avkntflper
      301 sfqkelyled iqvdedklns sllssestfm pvasglspvs ptsdlklhgi nlsledaddt
      361 vfecvrdvns geiankqetl citredcnrg vesertqenv kesmllpstd pvtssltant
      421 gdssassedr ilhsqpstsa gaesgvmtlc pdqmagessd sltvvaaele rmtkaatklq
      481 acwrgfytrn yhprakevry eirlnrmqeh iiclsdeiek lrqereedki qrlvqeeavr
      541 flwnqvkslq qwqlsvtqns gatwqpgils annfcpseps iqsfileqet ppdvsaaclv
      601 pasdilqvks lsrfpdsgfh tsmadqthgg dlcssekslt ermesslsve tvkqcdnsvs
      661 syssdveddh gesgqskess sneqdnrliq qylksvqqle eadegsncnd etggcwppia
      721 vsaesqesst davsvdllqd tsspargemg qtpescklns givegkqtdc dssfqmlhvg
      781 iav
//
LOCUS       XP_053921916             700 aa            linear   VRT 09-MAR-2023
DEFINITION  centrosomal protein of 97 kDa isoform X5 [Cuculus canorus].
ACCESSION   XP_053921916
VERSION     XP_053921916.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065941.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..700
                     /product="centrosomal protein of 97 kDa isoform X5"
                     /calculated_mol_wt=77622
     Region          46..250
                     /region_name="PPP1R42"
                     /note="protein phosphatase 1 regulatory subunit 42;
                     cl42388"
                     /db_xref="CDD:455733"
     Region          47..67
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          68..89
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          90..111
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          112..133
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          134..179
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          180..204
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          547..>569
                     /region_name="IQCD"
                     /note="IQ (isoleucine-glutamine) motif containing D
                     (IQCD); cd23767"
                     /db_xref="CDD:467745"
     CDS             1..700
                     /gene="CEP97"
                     /coded_by="XM_054065941.1:14..2116"
                     /db_xref="GeneID:104054277"
ORIGIN      
        1 mergarsgag aseaefapgp vrglvvnwsg qglqklgptl pcdadthtli ldknqiikle
       61 hlekcrnlvq lsvannrlvr mmgvakltkl rvlnlphnsi gyveglkdlv hlewlnlagn
      121 nlkaieqinc cvslqhldls dnniaqlgdl skltslktll lhgniitslr tapvclpqnl
      181 tvlslaenei rdlnevsfla clhqleqlsv mnnpcvmatp svpafdyrpy ivswclnlkv
      241 ldgyvisqke slkaewlysq gkgrsyrpgq hvqlvqylat vcplistygl qteedaklek
      301 ilskqrlhqr qlmhqnqneg apasstpnkt lpvayehssp aqppqivles epiiqknswv
      361 gpsvnddhsy avkntflper sfqkelyled iqvdedklns sllssestfm pvasglspvs
      421 ptsdlklhgi nlsledaddt vfecvrdvns geiankqetl citredcnrg vesertqenv
      481 kesmllpstd pvtssltant gdssassedr ilhsqpstsa gaesgvmtlc pdqmagessd
      541 sltvvaaele rmtkaatklq acwrgfytrn yhprakevry eirlnrmqeh iiclsdeiek
      601 lrqereedki qrlvqeeavr flwnqvkslq qwqlsvtqns gatwqpgils annfcpseps
      661 iqsfileqet ppdvsaaclv pasdilqvrl kmepiaaftk
//
LOCUS       XP_053921918             415 aa            linear   VRT 09-MAR-2023
DEFINITION  tRNA methyltransferase 10 homolog C [Cuculus canorus].
ACCESSION   XP_053921918
VERSION     XP_053921918.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065943.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..415
                     /product="tRNA methyltransferase 10 homolog C"
                     /calculated_mol_wt=48045
     Region          192..369
                     /region_name="Trm10_MRRP1"
                     /note="Mitochondrial ribonuclease P protein 1; cd18102"
                     /db_xref="CDD:349975"
     Site            order(279..281,298..299,301,303,324..325,327,339..340,342,
                     345)
                     /site_type="other"
                     /note="SAM binding site [chemical binding]"
                     /db_xref="CDD:349975"
     CDS             1..415
                     /gene="TRMT10C"
                     /coded_by="XM_054065943.1:179..1426"
                     /db_xref="GeneID:104054267"
ORIGIN      
        1 mqsanvllkk ilrssvlpfa aqhgmkkdlf plsrtlslsl flkqdnscss sekldldawk
       61 kvmksglqee vsetvsehqe psslasarei ldmwrlagrl vpenmseeql qtfiecptks
      121 akkkylkflh lkelkkksdk rkmeekrkrr lesqerdpkt detkrnshic lwtnnmdkay
      181 swraaqsmif gqplvfdmsy ekdmsvqeva ntvrqlvlse gcnrrsvdpf hihfcnfken
      241 slyhkilikh ykeswgklli tvtdqcytdv fpkdkliylt adspkvmkrf dhdkiyivgs
      301 mvdksiktgv slaqakrlgl etaalpleky llwntgaknl tldqmmhill tlkdtgdwkk
      361 alefvpkrky cgfvnksvhe lkkslnlint lklgkrqegv rkqfvknysk kltqk
//
LOCUS       XP_053921925             415 aa            linear   VRT 09-MAR-2023
DEFINITION  tRNA methyltransferase 10 homolog C [Cuculus canorus].
ACCESSION   XP_053921925
VERSION     XP_053921925.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065950.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..415
                     /product="tRNA methyltransferase 10 homolog C"
                     /calculated_mol_wt=48045
     Region          192..369
                     /region_name="Trm10_MRRP1"
                     /note="Mitochondrial ribonuclease P protein 1; cd18102"
                     /db_xref="CDD:349975"
     Site            order(279..281,298..299,301,303,324..325,327,339..340,342,
                     345)
                     /site_type="other"
                     /note="SAM binding site [chemical binding]"
                     /db_xref="CDD:349975"
     CDS             1..415
                     /gene="TRMT10C"
                     /coded_by="XM_054065950.1:175..1422"
                     /db_xref="GeneID:104054267"
ORIGIN      
        1 mqsanvllkk ilrssvlpfa aqhgmkkdlf plsrtlslsl flkqdnscss sekldldawk
       61 kvmksglqee vsetvsehqe psslasarei ldmwrlagrl vpenmseeql qtfiecptks
      121 akkkylkflh lkelkkksdk rkmeekrkrr lesqerdpkt detkrnshic lwtnnmdkay
      181 swraaqsmif gqplvfdmsy ekdmsvqeva ntvrqlvlse gcnrrsvdpf hihfcnfken
      241 slyhkilikh ykeswgklli tvtdqcytdv fpkdkliylt adspkvmkrf dhdkiyivgs
      301 mvdksiktgv slaqakrlgl etaalpleky llwntgaknl tldqmmhill tlkdtgdwkk
      361 alefvpkrky cgfvnksvhe lkkslnlint lklgkrqegv rkqfvknysk kltqk
//
LOCUS       XP_053921938             178 aa            linear   VRT 09-MAR-2023
DEFINITION  PEST proteolytic signal-containing nuclear protein isoform X1
            [Cuculus canorus].
ACCESSION   XP_053921938
VERSION     XP_053921938.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065963.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..178
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..178
                     /product="PEST proteolytic signal-containing nuclear
                     protein isoform X1"
                     /calculated_mol_wt=18938
     Region          19..170
                     /region_name="PCNP"
                     /note="PEST, proteolytic signal-containing nuclear protein
                     family; pfam15473"
                     /db_xref="CDD:464736"
     CDS             1..178
                     /gene="PCNP"
                     /coded_by="XM_054065963.1:61..597"
                     /db_xref="GeneID:104054274"
ORIGIN      
        1 madgraegek vkrpqpgggp eeeaekpvkt ktvsssngge sssrsaekra aneeaedfat
       61 kpapakmskf gfsigsqtak kasaisikla ankpkepvpt lapktlsvaa afnededsep
      121 eemppeakmr mknigrdtpt sagpnsfnkg khgfsdnqkl wernikshlg nvhdhenn
//
LOCUS       XP_053921945             161 aa            linear   VRT 09-MAR-2023
DEFINITION  PEST proteolytic signal-containing nuclear protein isoform X2
            [Cuculus canorus].
ACCESSION   XP_053921945
VERSION     XP_053921945.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065970.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..161
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..161
                     /product="PEST proteolytic signal-containing nuclear
                     protein isoform X2"
                     /calculated_mol_wt=17194
     Region          20..153
                     /region_name="PCNP"
                     /note="PEST, proteolytic signal-containing nuclear protein
                     family; pfam15473"
                     /db_xref="CDD:464736"
     CDS             1..161
                     /gene="PCNP"
                     /coded_by="XM_054065970.1:3463..3948"
                     /db_xref="GeneID:104054274"
ORIGIN      
        1 mlfevaapin llsknssscn ggesssrsae kraaneeaed fatkpapakm skfgfsigsq
       61 takkasaisi klaankpkep vptlapktls vaaafneded sepeemppea kmrmknigrd
      121 tptsagpnsf nkgkhgfsdn qklwerniks hlgnvhdhen n
//
LOCUS       XP_009553534             149 aa            linear   VRT 09-MAR-2023
DEFINITION  thioredoxin-like protein 4B [Cuculus canorus].
ACCESSION   XP_009553534
VERSION     XP_009553534.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009555239.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..149
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..149
                     /product="thioredoxin-like protein 4B"
                     /calculated_mol_wt=16927
     Region          10..123
                     /region_name="DLP"
                     /note="Dim1 family, Dim1-like protein (DLP) subfamily; DLP
                     is a novel protein which shares 38% sequence identity to
                     Dim1. Like Dim1, it is also implicated in pre-mRNA
                     splicing and cell cycle progression. DLP is located in the
                     nucleus and has been shown to...; cd02986"
                     /db_xref="CDD:239284"
     Site            order(21,23..24,86..88)
                     /site_type="active"
                     /note="first critical site [active]"
                     /db_xref="CDD:239284"
     Site            40..43
                     /site_type="active"
                     /note="second critical site [active]"
                     /db_xref="CDD:239284"
     CDS             1..149
                     /gene="TXNL4B"
                     /coded_by="XM_009555239.2:243..692"
                     /db_xref="GeneID:104054266"
ORIGIN      
        1 msfllpkltc krevdqaiks vaekvlvlrf grdndavclq lddilaktah dlskmsviyl
       61 vdvdkvpvyt qyfdisyips tvfffngqhm kvdygspdht kfvgsfktkq dfidlieviy
      121 rgamrgkliv rspidpnnip kydllyqgi
//
LOCUS       XP_053921967             149 aa            linear   VRT 09-MAR-2023
DEFINITION  thioredoxin-like protein 4B [Cuculus canorus].
ACCESSION   XP_053921967
VERSION     XP_053921967.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054065992.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..149
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..149
                     /product="thioredoxin-like protein 4B"
                     /calculated_mol_wt=16927
     Region          10..123
                     /region_name="DLP"
                     /note="Dim1 family, Dim1-like protein (DLP) subfamily; DLP
                     is a novel protein which shares 38% sequence identity to
                     Dim1. Like Dim1, it is also implicated in pre-mRNA
                     splicing and cell cycle progression. DLP is located in the
                     nucleus and has been shown to...; cd02986"
                     /db_xref="CDD:239284"
     Site            order(21,23..24,86..88)
                     /site_type="active"
                     /note="first critical site [active]"
                     /db_xref="CDD:239284"
     Site            40..43
                     /site_type="active"
                     /note="second critical site [active]"
                     /db_xref="CDD:239284"
     CDS             1..149
                     /gene="TXNL4B"
                     /coded_by="XM_054065992.1:243..692"
                     /db_xref="GeneID:104054266"
ORIGIN      
        1 msfllpkltc krevdqaiks vaekvlvlrf grdndavclq lddilaktah dlskmsviyl
       61 vdvdkvpvyt qyfdisyips tvfffngqhm kvdygspdht kfvgsfktkq dfidlieviy
      121 rgamrgkliv rspidpnnip kydllyqgi
//
LOCUS       XP_053921982             157 aa            linear   VRT 09-MAR-2023
DEFINITION  60S ribosomal protein L24 [Cuculus canorus].
ACCESSION   XP_053921982
VERSION     XP_053921982.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066007.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..157
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..157
                     /product="60S ribosomal protein L24"
                     /calculated_mol_wt=17646
     Region          2..64
                     /region_name="Ribosomal_L24e"
                     /note="Ribosomal protein L24e; pfam01246"
                     /db_xref="CDD:460131"
     CDS             1..157
                     /gene="RPL24"
                     /coded_by="XM_054066007.1:53..526"
                     /db_xref="GeneID:104054276"
ORIGIN      
        1 mkvelcsfsg ykiypghgrr yartdgkvfq flnakcesaf lskrnprqin wtvlyrrkhk
       61 kgqseevqkk rtrravkfqr aitgaslaei makrnqkpev rkaqreqair aakeakkakq
      121 atkktavsaa kaptkaapkq kivkpvkvsa prvggkr
//
LOCUS       XP_053921990             805 aa            linear   VRT 09-MAR-2023
DEFINITION  calcium-independent phospholipase A2-gamma isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053921990
VERSION     XP_053921990.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066015.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..805
                     /product="calcium-independent phospholipase A2-gamma
                     isoform X1"
                     /calculated_mol_wt=90423
     Region          458..764
                     /region_name="Pat_PNPLA8"
                     /note="Patatin-like phospholipase domain containing
                     protein 8; cd07211"
                     /db_xref="CDD:132850"
     Site            order(473..474,476,506,650)
                     /site_type="active"
                     /db_xref="CDD:132850"
     Site            504..508
                     /site_type="other"
                     /note="nucleophile elbow"
                     /db_xref="CDD:132850"
     CDS             1..805
                     /gene="PNPLA8"
                     /coded_by="XM_054066015.1:297..2714"
                     /db_xref="GeneID:104062396"
ORIGIN      
        1 mvvhlslday lffvvnpksl wwkqrnkylc lcrpkacwri nhaihprvfh tseprckwar
       61 srtfwynnys yshdflyyrv sklltssskg ltkvnsrmsr ikntiesvsk avsgthselv
      121 sriarlkshs gtlgkanksn angnnisanl eddkqitdar tqedcnsgpa akkstcaten
      181 svpmlvtlsg tnhdtpedsa paknhlfhis yfstsfgety nfvadhinqy fnnnsvmdqe
      241 kkrnallqds kteernklds settvtseek tvdsagtvgp eaetlgaekt ntalpastkk
      301 sianflsyps nsvqafvdsy igglvpklrs dtkvvsqeks kqpeqevsek degdkakeak
      361 taeerekhls lqrekiiarv sidnrtralv qalrrssnrr vcisrveelt yhllefpesr
      421 gvaikekiip cllrlrqand eslqaavret laiigytdpv kgwgirvlti dgggtrglva
      481 lqtlrkleel tgkpvhqlfd yicgvstgai lafmlglfhi plddceelyr klgsdvfkqn
      541 vivgtvkmgw shafydsdiw ekmlkekmgs nlmietarns kcpkvaavst ivnrgtplka
      601 fvfrnynhfp gvkshyiggc qyklwqaira ssaapgyfqe yvlgndlhqd gglllnnpsa
      661 lavheckclw pdvplqclvs lgtgryeseg ktnvtytslk akltnvissa tdteevhtml
      721 dallppdtyf rfnplmnedi aldesrkekl nqlqtdgiry lerneeklkk aakvltqekt
      781 tlqrlqdwir lkadmyeglp flskl
//
LOCUS       XP_053921999             805 aa            linear   VRT 09-MAR-2023
DEFINITION  calcium-independent phospholipase A2-gamma isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053921999
VERSION     XP_053921999.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066024.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..805
                     /product="calcium-independent phospholipase A2-gamma
                     isoform X1"
                     /calculated_mol_wt=90423
     Region          458..764
                     /region_name="Pat_PNPLA8"
                     /note="Patatin-like phospholipase domain containing
                     protein 8; cd07211"
                     /db_xref="CDD:132850"
     Site            order(473..474,476,506,650)
                     /site_type="active"
                     /db_xref="CDD:132850"
     Site            504..508
                     /site_type="other"
                     /note="nucleophile elbow"
                     /db_xref="CDD:132850"
     CDS             1..805
                     /gene="PNPLA8"
                     /coded_by="XM_054066024.1:508..2925"
                     /db_xref="GeneID:104062396"
ORIGIN      
        1 mvvhlslday lffvvnpksl wwkqrnkylc lcrpkacwri nhaihprvfh tseprckwar
       61 srtfwynnys yshdflyyrv sklltssskg ltkvnsrmsr ikntiesvsk avsgthselv
      121 sriarlkshs gtlgkanksn angnnisanl eddkqitdar tqedcnsgpa akkstcaten
      181 svpmlvtlsg tnhdtpedsa paknhlfhis yfstsfgety nfvadhinqy fnnnsvmdqe
      241 kkrnallqds kteernklds settvtseek tvdsagtvgp eaetlgaekt ntalpastkk
      301 sianflsyps nsvqafvdsy igglvpklrs dtkvvsqeks kqpeqevsek degdkakeak
      361 taeerekhls lqrekiiarv sidnrtralv qalrrssnrr vcisrveelt yhllefpesr
      421 gvaikekiip cllrlrqand eslqaavret laiigytdpv kgwgirvlti dgggtrglva
      481 lqtlrkleel tgkpvhqlfd yicgvstgai lafmlglfhi plddceelyr klgsdvfkqn
      541 vivgtvkmgw shafydsdiw ekmlkekmgs nlmietarns kcpkvaavst ivnrgtplka
      601 fvfrnynhfp gvkshyiggc qyklwqaira ssaapgyfqe yvlgndlhqd gglllnnpsa
      661 lavheckclw pdvplqclvs lgtgryeseg ktnvtytslk akltnvissa tdteevhtml
      721 dallppdtyf rfnplmnedi aldesrkekl nqlqtdgiry lerneeklkk aakvltqekt
      781 tlqrlqdwir lkadmyeglp flskl
//
LOCUS       XP_053922007             805 aa            linear   VRT 09-MAR-2023
DEFINITION  calcium-independent phospholipase A2-gamma isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053922007
VERSION     XP_053922007.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066032.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..805
                     /product="calcium-independent phospholipase A2-gamma
                     isoform X1"
                     /calculated_mol_wt=90423
     Region          458..764
                     /region_name="Pat_PNPLA8"
                     /note="Patatin-like phospholipase domain containing
                     protein 8; cd07211"
                     /db_xref="CDD:132850"
     Site            order(473..474,476,506,650)
                     /site_type="active"
                     /db_xref="CDD:132850"
     Site            504..508
                     /site_type="other"
                     /note="nucleophile elbow"
                     /db_xref="CDD:132850"
     CDS             1..805
                     /gene="PNPLA8"
                     /coded_by="XM_054066032.1:274..2691"
                     /db_xref="GeneID:104062396"
ORIGIN      
        1 mvvhlslday lffvvnpksl wwkqrnkylc lcrpkacwri nhaihprvfh tseprckwar
       61 srtfwynnys yshdflyyrv sklltssskg ltkvnsrmsr ikntiesvsk avsgthselv
      121 sriarlkshs gtlgkanksn angnnisanl eddkqitdar tqedcnsgpa akkstcaten
      181 svpmlvtlsg tnhdtpedsa paknhlfhis yfstsfgety nfvadhinqy fnnnsvmdqe
      241 kkrnallqds kteernklds settvtseek tvdsagtvgp eaetlgaekt ntalpastkk
      301 sianflsyps nsvqafvdsy igglvpklrs dtkvvsqeks kqpeqevsek degdkakeak
      361 taeerekhls lqrekiiarv sidnrtralv qalrrssnrr vcisrveelt yhllefpesr
      421 gvaikekiip cllrlrqand eslqaavret laiigytdpv kgwgirvlti dgggtrglva
      481 lqtlrkleel tgkpvhqlfd yicgvstgai lafmlglfhi plddceelyr klgsdvfkqn
      541 vivgtvkmgw shafydsdiw ekmlkekmgs nlmietarns kcpkvaavst ivnrgtplka
      601 fvfrnynhfp gvkshyiggc qyklwqaira ssaapgyfqe yvlgndlhqd gglllnnpsa
      661 lavheckclw pdvplqclvs lgtgryeseg ktnvtytslk akltnvissa tdteevhtml
      721 dallppdtyf rfnplmnedi aldesrkekl nqlqtdgiry lerneeklkk aakvltqekt
      781 tlqrlqdwir lkadmyeglp flskl
//
LOCUS       XP_053922010             805 aa            linear   VRT 09-MAR-2023
DEFINITION  calcium-independent phospholipase A2-gamma isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053922010
VERSION     XP_053922010.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066035.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..805
                     /product="calcium-independent phospholipase A2-gamma
                     isoform X1"
                     /calculated_mol_wt=90423
     Region          458..764
                     /region_name="Pat_PNPLA8"
                     /note="Patatin-like phospholipase domain containing
                     protein 8; cd07211"
                     /db_xref="CDD:132850"
     Site            order(473..474,476,506,650)
                     /site_type="active"
                     /db_xref="CDD:132850"
     Site            504..508
                     /site_type="other"
                     /note="nucleophile elbow"
                     /db_xref="CDD:132850"
     CDS             1..805
                     /gene="PNPLA8"
                     /coded_by="XM_054066035.1:270..2687"
                     /db_xref="GeneID:104062396"
ORIGIN      
        1 mvvhlslday lffvvnpksl wwkqrnkylc lcrpkacwri nhaihprvfh tseprckwar
       61 srtfwynnys yshdflyyrv sklltssskg ltkvnsrmsr ikntiesvsk avsgthselv
      121 sriarlkshs gtlgkanksn angnnisanl eddkqitdar tqedcnsgpa akkstcaten
      181 svpmlvtlsg tnhdtpedsa paknhlfhis yfstsfgety nfvadhinqy fnnnsvmdqe
      241 kkrnallqds kteernklds settvtseek tvdsagtvgp eaetlgaekt ntalpastkk
      301 sianflsyps nsvqafvdsy igglvpklrs dtkvvsqeks kqpeqevsek degdkakeak
      361 taeerekhls lqrekiiarv sidnrtralv qalrrssnrr vcisrveelt yhllefpesr
      421 gvaikekiip cllrlrqand eslqaavret laiigytdpv kgwgirvlti dgggtrglva
      481 lqtlrkleel tgkpvhqlfd yicgvstgai lafmlglfhi plddceelyr klgsdvfkqn
      541 vivgtvkmgw shafydsdiw ekmlkekmgs nlmietarns kcpkvaavst ivnrgtplka
      601 fvfrnynhfp gvkshyiggc qyklwqaira ssaapgyfqe yvlgndlhqd gglllnnpsa
      661 lavheckclw pdvplqclvs lgtgryeseg ktnvtytslk akltnvissa tdteevhtml
      721 dallppdtyf rfnplmnedi aldesrkekl nqlqtdgiry lerneeklkk aakvltqekt
      781 tlqrlqdwir lkadmyeglp flskl
//
LOCUS       XP_053922018             708 aa            linear   VRT 09-MAR-2023
DEFINITION  calcium-independent phospholipase A2-gamma isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053922018
VERSION     XP_053922018.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066043.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..708
                     /product="calcium-independent phospholipase A2-gamma
                     isoform X2"
                     /calculated_mol_wt=78637
     Region          361..667
                     /region_name="Pat_PNPLA8"
                     /note="Patatin-like phospholipase domain containing
                     protein 8; cd07211"
                     /db_xref="CDD:132850"
     Site            order(376..377,379,409,553)
                     /site_type="active"
                     /db_xref="CDD:132850"
     Site            407..411
                     /site_type="other"
                     /note="nucleophile elbow"
                     /db_xref="CDD:132850"
     CDS             1..708
                     /gene="PNPLA8"
                     /coded_by="XM_054066043.1:168..2294"
                     /db_xref="GeneID:104062396"
ORIGIN      
        1 msriknties vskavsgths elvsriarlk shsgtlgkan ksnangnnis anleddkqit
       61 dartqedcns gpaakkstca tensvpmlvt lsgtnhdtpe dsapaknhlf hisyfstsfg
      121 etynfvadhi nqyfnnnsvm dqekkrnall qdskteernk ldssettvts eektvdsagt
      181 vgpeaetlga ektntalpas tkksianfls ypsnsvqafv dsyigglvpk lrsdtkvvsq
      241 ekskqpeqev sekdegdkak eaktaeerek hlslqrekii arvsidnrtr alvqalrrss
      301 nrrvcisrve eltyhllefp esrgvaikek iipcllrlrq andeslqaav retlaiigyt
      361 dpvkgwgirv ltidgggtrg lvalqtlrkl eeltgkpvhq lfdyicgvst gailafmlgl
      421 fhiplddcee lyrklgsdvf kqnvivgtvk mgwshafyds diwekmlkek mgsnlmieta
      481 rnskcpkvaa vstivnrgtp lkafvfrnyn hfpgvkshyi ggcqyklwqa irassaapgy
      541 fqeyvlgndl hqdgglllnn psalavheck clwpdvplqc lvslgtgrye segktnvtyt
      601 slkakltnvi ssatdteevh tmldallppd tyfrfnplmn edialdesrk eklnqlqtdg
      661 irylerneek lkkaakvltq ekttlqrlqd wirlkadmye glpflskl
//
LOCUS       XP_053922023             674 aa            linear   VRT 09-MAR-2023
DEFINITION  calcium-independent phospholipase A2-gamma isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053922023
VERSION     XP_053922023.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066048.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..674
                     /product="calcium-independent phospholipase A2-gamma
                     isoform X3"
                     /calculated_mol_wt=75442
     Region          458..>649
                     /region_name="Patatin_and_cPLA2"
                     /note="Patatins and Phospholipases; cl11396"
                     /db_xref="CDD:416256"
     Site            order(473..474,476,506)
                     /site_type="active"
                     /db_xref="CDD:132836"
     Site            504..508
                     /site_type="other"
                     /note="nucleophile elbow"
                     /db_xref="CDD:132836"
     CDS             1..674
                     /gene="PNPLA8"
                     /coded_by="XM_054066048.1:301..2325"
                     /db_xref="GeneID:104062396"
ORIGIN      
        1 mvvhlslday lffvvnpksl wwkqrnkylc lcrpkacwri nhaihprvfh tseprckwar
       61 srtfwynnys yshdflyyrv sklltssskg ltkvnsrmsr ikntiesvsk avsgthselv
      121 sriarlkshs gtlgkanksn angnnisanl eddkqitdar tqedcnsgpa akkstcaten
      181 svpmlvtlsg tnhdtpedsa paknhlfhis yfstsfgety nfvadhinqy fnnnsvmdqe
      241 kkrnallqds kteernklds settvtseek tvdsagtvgp eaetlgaekt ntalpastkk
      301 sianflsyps nsvqafvdsy igglvpklrs dtkvvsqeks kqpeqevsek degdkakeak
      361 taeerekhls lqrekiiarv sidnrtralv qalrrssnrr vcisrveelt yhllefpesr
      421 gvaikekiip cllrlrqand eslqaavret laiigytdpv kgwgirvlti dgggtrglva
      481 lqtlrkleel tgkpvhqlfd yicgvstgai lafmlglfhi plddceelyr klgsdvfkqn
      541 vivgtvkmgw shafydsdiw ekmlkekmgs nlmietarns kcpkvaavst ivnrgtplka
      601 fvfrnynhfp gvkshyiggc qyklwqaira ssaapgyfqe yvlgndlhqg llpsllptsl
      661 sfphmvhlat lkif
//
LOCUS       XP_053922028             704 aa            linear   VRT 09-MAR-2023
DEFINITION  dachshund homolog 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053922028
VERSION     XP_053922028.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066053.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..704
                     /product="dachshund homolog 1 isoform X1"
                     /calculated_mol_wt=74404
     Region          131..225
                     /region_name="DHD_Dac"
                     /note="Dachshund-homology domain found in the retinal
                     determination protein Dachshund and similar proteins;
                     cd21081"
                     /db_xref="CDD:410784"
     Region          <330..>443
                     /region_name="Atrophin-1"
                     /note="Atrophin-1 family; pfam03154"
                     /db_xref="CDD:460830"
     CDS             1..704
                     /gene="DACH1"
                     /coded_by="XM_054066053.1:15..2129"
                     /db_xref="GeneID:104054968"
ORIGIN      
        1 mavpaalipp tqlvppqppv stsaactttt ttstssssat ssssspspsi apppaasgtn
       61 lfrpepiaaa aaatvtstts stssssgggg ggggspslgt ggtstpsaag slpgkpvyst
      121 pspventpqn neckmvdlrg akvasftveg celiclpqaf dlflkhlvgg lhtvytklkr
      181 leitpvvcnv eqvrilrglg aiqpgvnrck lisrkdfetl yndctnassr pgrppkrtqs
      241 vtspenshim phsvpglmsp giipptglta aaaaaaaatn aaiaeamkvk kikleamsny
      301 hannnqhgad sengdlnssv gssdgswdke klqspptqgs qasvnhpnlp gqhnvpvshp
      361 lnplqqnhll pnglelpfmm mphplipvsl ppasvtmams qmnhlstian maaaaqvqsp
      421 psrvetsvik ervpdspspa psleegrrpg shpsshrsss vssspartes ssdripavhq
      481 nglsmnqmlm glspnvlpgp kegdlaghdv ghetkrihie kdetplstpt ardsldklsl
      541 tghgqplppg fpspflfpdg lssietlltn iqgllkvaid naraqekqvq lektelkmel
      601 frerelretl ekqlaveqkn raiiqkrlkk ekkakrklqe alefetkrre qaeqtlkqaa
      661 stdslrvlne sltpeieadr sggrtdaert iqdgrlylkt tvmy
//
LOCUS       XP_053922033             703 aa            linear   VRT 09-MAR-2023
DEFINITION  dachshund homolog 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053922033
VERSION     XP_053922033.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066058.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..703
                     /product="dachshund homolog 1 isoform X2"
                     /calculated_mol_wt=74333
     Region          131..225
                     /region_name="DHD_Dac"
                     /note="Dachshund-homology domain found in the retinal
                     determination protein Dachshund and similar proteins;
                     cd21081"
                     /db_xref="CDD:410784"
     Region          <330..>443
                     /region_name="Atrophin-1"
                     /note="Atrophin-1 family; pfam03154"
                     /db_xref="CDD:460830"
     CDS             1..703
                     /gene="DACH1"
                     /coded_by="XM_054066058.1:15..2126"
                     /db_xref="GeneID:104054968"
ORIGIN      
        1 mavpaalipp tqlvppqppv stsaactttt ttstssssat ssssspspsi apppaasgtn
       61 lfrpepiaaa aaatvtstts stssssgggg ggggspslgt ggtstpsaag slpgkpvyst
      121 pspventpqn neckmvdlrg akvasftveg celiclpqaf dlflkhlvgg lhtvytklkr
      181 leitpvvcnv eqvrilrglg aiqpgvnrck lisrkdfetl yndctnassr pgrppkrtqs
      241 vtspenshim phsvpglmsp giipptglta aaaaaaaatn aaiaeamkvk kikleamsny
      301 hannnqhgad sengdlnssv gssdgswdke klqspptqgs qasvnhpnlp gqhnvpvshp
      361 lnplqqnhll pnglelpfmm mphplipvsl ppasvtmams qmnhlstian maaaaqvqsp
      421 psrvetsvik ervpdspspa psleegrrpg shpsshrsss vssspartes ssdripvhqn
      481 glsmnqmlmg lspnvlpgpk egdlaghdvg hetkrihiek detplstpta rdsldklslt
      541 ghgqplppgf pspflfpdgl ssietlltni qgllkvaidn araqekqvql ektelkmelf
      601 rerelretle kqlaveqknr aiiqkrlkke kkakrklqea lefetkrreq aeqtlkqaas
      661 tdslrvlnes ltpeieadrs ggrtdaerti qdgrlylktt vmy
//
LOCUS       XP_053922044             699 aa            linear   VRT 09-MAR-2023
DEFINITION  dachshund homolog 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053922044
VERSION     XP_053922044.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066069.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..699
                     /product="dachshund homolog 1 isoform X3"
                     /calculated_mol_wt=73640
     Region          131..225
                     /region_name="DHD_Dac"
                     /note="Dachshund-homology domain found in the retinal
                     determination protein Dachshund and similar proteins;
                     cd21081"
                     /db_xref="CDD:410784"
     CDS             1..699
                     /gene="DACH1"
                     /coded_by="XM_054066069.1:15..2114"
                     /db_xref="GeneID:104054968"
ORIGIN      
        1 mavpaalipp tqlvppqppv stsaactttt ttstssssat ssssspspsi apppaasgtn
       61 lfrpepiaaa aaatvtstts stssssgggg ggggspslgt ggtstpsaag slpgkpvyst
      121 pspventpqn neckmvdlrg akvasftveg celiclpqaf dlflkhlvgg lhtvytklkr
      181 leitpvvcnv eqvrilrglg aiqpgvnrck lisrkdfetl yndctnassr pgrppkrtqs
      241 vtspenshim phsvpglmsp giipptglta aaaaaaaatn aaiaeamkvk kikleamsny
      301 hannnqhgad sengdlnssv gssdgswdke klqspptqgs qasvnhpnlp gqhnvpvshp
      361 lnplqqnhll pnglelpfmm mphplipvsl ppasvtmams qmnhlstian maaaaqvqsp
      421 psrvetsvik ervpdspspa psleegrrpg shpsshrsss vssspartes ssdripavhq
      481 nglsmnqmlm glspnvlpgp kegdlaghdv ghetkrihie kdetplstpt ardsldklsl
      541 tghgqplppg fpspflfpdg lssietlltn iqgllkvaid naraqekqvq lektelkmel
      601 frerelretl ekqlaveqkn raiiqkrlkk ekkakrklqe alefetkrre qaeqtlkqaa
      661 stdslrvlne sltpeieadr sggrtdaert iqgsldaya
//
LOCUS       XP_053922050             652 aa            linear   VRT 09-MAR-2023
DEFINITION  dachshund homolog 1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053922050
VERSION     XP_053922050.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066075.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..652
                     /product="dachshund homolog 1 isoform X4"
                     /calculated_mol_wt=68837
     Region          131..225
                     /region_name="DHD_Dac"
                     /note="Dachshund-homology domain found in the retinal
                     determination protein Dachshund and similar proteins;
                     cd21081"
                     /db_xref="CDD:410784"
     CDS             1..652
                     /gene="DACH1"
                     /coded_by="XM_054066075.1:15..1973"
                     /db_xref="GeneID:104054968"
ORIGIN      
        1 mavpaalipp tqlvppqppv stsaactttt ttstssssat ssssspspsi apppaasgtn
       61 lfrpepiaaa aaatvtstts stssssgggg ggggspslgt ggtstpsaag slpgkpvyst
      121 pspventpqn neckmvdlrg akvasftveg celiclpqaf dlflkhlvgg lhtvytklkr
      181 leitpvvcnv eqvrilrglg aiqpgvnrck lisrkdfetl yndctnassr pgrppkrtqs
      241 vtspenshim phsvpglmsp giipptglta aaaaaaaatn aaiaeamkvk kikleamsny
      301 hannnqhgad sengdlnssv glelpfmmmp hplipvslpp asvtmamsqm nhlstianma
      361 aaaqvqspps rvetsviker vpdspspaps leegrrpgsh psshrsssvs sspartesss
      421 dripavhqng lsmnqmlmgl spnvlpgpke gdlaghdvgh etkrihiekd etplstptar
      481 dsldklsltg hgqplppgfp spflfpdgls sietlltniq gllkvaidna raqekqvqle
      541 ktelkmelfr erelretlek qlaveqknra iiqkrlkkek kakrklqeal efetkrreqa
      601 eqtlkqaast dslrvlnesl tpeieadrsg grtdaertiq dgrlylkttv my
//
LOCUS       XP_053922054             651 aa            linear   VRT 09-MAR-2023
DEFINITION  dachshund homolog 1 isoform X5 [Cuculus canorus].
ACCESSION   XP_053922054
VERSION     XP_053922054.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066079.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..651
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..651
                     /product="dachshund homolog 1 isoform X5"
                     /calculated_mol_wt=68766
     Region          131..225
                     /region_name="DHD_Dac"
                     /note="Dachshund-homology domain found in the retinal
                     determination protein Dachshund and similar proteins;
                     cd21081"
                     /db_xref="CDD:410784"
     CDS             1..651
                     /gene="DACH1"
                     /coded_by="XM_054066079.1:15..1970"
                     /db_xref="GeneID:104054968"
ORIGIN      
        1 mavpaalipp tqlvppqppv stsaactttt ttstssssat ssssspspsi apppaasgtn
       61 lfrpepiaaa aaatvtstts stssssgggg ggggspslgt ggtstpsaag slpgkpvyst
      121 pspventpqn neckmvdlrg akvasftveg celiclpqaf dlflkhlvgg lhtvytklkr
      181 leitpvvcnv eqvrilrglg aiqpgvnrck lisrkdfetl yndctnassr pgrppkrtqs
      241 vtspenshim phsvpglmsp giipptglta aaaaaaaatn aaiaeamkvk kikleamsny
      301 hannnqhgad sengdlnssv glelpfmmmp hplipvslpp asvtmamsqm nhlstianma
      361 aaaqvqspps rvetsviker vpdspspaps leegrrpgsh psshrsssvs sspartesss
      421 dripvhqngl smnqmlmgls pnvlpgpkeg dlaghdvghe tkrihiekde tplstptard
      481 sldklsltgh gqplppgfps pflfpdglss ietlltniqg llkvaidnar aqekqvqlek
      541 telkmelfre relretlekq laveqknrai iqkrlkkekk akrklqeale fetkrreqae
      601 qtlkqaastd slrvlneslt peieadrsgg rtdaertiqd grlylkttvm y
//
LOCUS       XP_053922060             646 aa            linear   VRT 09-MAR-2023
DEFINITION  dachshund homolog 1 isoform X6 [Cuculus canorus].
ACCESSION   XP_053922060
VERSION     XP_053922060.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066085.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..646
                     /product="dachshund homolog 1 isoform X6"
                     /calculated_mol_wt=68002
     Region          131..225
                     /region_name="DHD_Dac"
                     /note="Dachshund-homology domain found in the retinal
                     determination protein Dachshund and similar proteins;
                     cd21081"
                     /db_xref="CDD:410784"
     CDS             1..646
                     /gene="DACH1"
                     /coded_by="XM_054066085.1:15..1955"
                     /db_xref="GeneID:104054968"
ORIGIN      
        1 mavpaalipp tqlvppqppv stsaactttt ttstssssat ssssspspsi apppaasgtn
       61 lfrpepiaaa aaatvtstts stssssgggg ggggspslgt ggtstpsaag slpgkpvyst
      121 pspventpqn neckmvdlrg akvasftveg celiclpqaf dlflkhlvgg lhtvytklkr
      181 leitpvvcnv eqvrilrglg aiqpgvnrck lisrkdfetl yndctnassr pgrppkrtqs
      241 vtspenshim phsvpglmsp giipptglta aaaaaaaatn aaiaeamkvk kikleamsny
      301 hannnqhgad sengdlnssv glelpfmmmp hplipvslpp asvtmamsqm nhlstianma
      361 aaaqvqspps rvetsviker vpdspspaps leegrrpgsh psshrsssvs sspartesss
      421 dripvhqngl smnqmlmgls pnvlpgpkeg dlaghdvghe tkrihiekde tplstptard
      481 sldklsltgh gqplppgfps pflfpdglss ietlltniqg llkvaidnar aqekqvqlek
      541 telkmelfre relretlekq laveqknrai iqkrlkkekk akrklqeale fetkrreqae
      601 qtlkqaastd slrvlneslt peieadrsgg rtdaertiqg sldaya
//
LOCUS       XP_053922074            1280 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat and sterile alpha motif domain-containing protein 1B
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053922074
VERSION     XP_053922074.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066099.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1280
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1280
                     /product="ankyrin repeat and sterile alpha motif
                     domain-containing protein 1B isoform X1"
                     /calculated_mol_wt=141382
     Region          7..56
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          43..269
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(58,60,64..65,68..70,72..73,77,80,89,91,93,97..98,
                     101..103,105..106,110,113,125,127,129,133..134,137..139,
                     141..142,146,149,158)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          58..89
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          91..125
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          127..158
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          160..191
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          193..223
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          226..256
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          810..876
                     /region_name="SAM_AIDA1AB-like_repeat1"
                     /note="SAM domain of AIDA1AB-like proteins, repeat 1;
                     cd09499"
                     /db_xref="CDD:188898"
     Site            order(832..835,837,839..840,843..844,846..847,850,
                     853..854)
                     /site_type="other"
                     /note="intramolecular dimer interface ML [polypeptide
                     binding]"
                     /db_xref="CDD:188898"
     Region          881..945
                     /region_name="SAM_AIDA1AB-like_repeat2"
                     /note="SAM domain of AIDA1AB-like proteins, repeat 2;
                     cd09500"
                     /db_xref="CDD:188899"
     Site            order(931..934,936..937)
                     /site_type="other"
                     /note="intramolecular dimer interface EH [polypeptide
                     binding]"
                     /db_xref="CDD:188899"
     Region          1070..1215
                     /region_name="PTB_Anks"
                     /note="Ankyrin repeat and sterile alpha motif (SAM)
                     domain-containing (Anks) protein family
                     Phosphotyrosine-binding (PTB) domain; cd01274"
                     /db_xref="CDD:269972"
     Site            order(1089,1164,1184)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:269972"
     Site            order(1153..1158,1171,1195,1199)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:269972"
     CDS             1..1280
                     /gene="ANKS1B"
                     /coded_by="XM_054066099.1:180..4022"
                     /db_xref="GeneID:104055180"
ORIGIN      
        1 mgkdqellea artgnvalve kllsgrkggi lgsgsgaipl ssllsiwrgp ninctdssgy
       61 talhhaalng hkdivlkllq yeastnvadn kgyfpihlaa wrgdvdivki lihhgpshsr
      121 vneqnnenet alhcaaqygh sevvavllee ltdptirnnk letpldlaal ygrlrvvkmi
      181 ikaypnlmnc ntrkhtplhl aarnghkavv qvlleagmdv scqtekgsal heaalfgkve
      241 vvrvlletgi dtnikdslgr tvldilkehp sqqslqiaal lqeymetgsa siseerplec
      301 aehqscvlss evppspkaks eavtgelskl ldeiklcqek eysfedlsht isdhyldnfs
      361 kvseeelmts gsqtklnvrp sstclspree edddagentc gpsglwealt pcngcrnlgf
      421 pmlaqesysk krgyaleais svpldavpse ndsslcgsvd vavtkkpcsl eiarvpssrp
      481 dnapqvaita pgsgnhrnss tgptpdcspp spdtalksiv kvirpqpkqr tsivsslefh
      541 rmnhshnyfe inssigctrf natpatspan yssgsleynv eereiperls kgetstdsel
      601 qegypaeqfa gllhgsspac dppdnplhly skaiqcsspl eksilskttm qqiqlrkesn
      661 ndppmkkkkp pvvnrtifht ktkpvenhtl vgtstriseq wvittggfve ractlgrirs
      721 lpktllemhl cknvsksdsn lithppndkk arsnwseptp sqqcskgnse rtpsftsewe
      781 eidkimslid agintglgem ndhttrprcp vqtvgqwlen iglpqyenhl langfdnvqf
      841 mgsnvmedqd lleigilnsg hrqrilqaiq llpkmkqvgh dgynptsvae wldsielgdy
      901 tksflingyt smdlvkkiwe ielinvlkis lighrkrvla slgdrlhedp pqkpprsitl
      961 repsgnhtpp qlspslsqst fttggsldvp hiimqgdarr rrnenyfddi prsklerqma
     1021 qqssvceiwt nqnagypfss ihqvhntgdw gepsitlrpp neatastpvq ywqhhpekli
     1081 fqscdykafy lgsmlvkelr gtestqdaca kmrksteqmk kvptivlsvs ykgvkfidat
     1141 nkniiaehei rniscaaqdp edlstfayit kdlktnhhyc hvftafdvnl ayeiiltlgq
     1201 afevayqlal qarkgghsst lpesfenkps kpipkprvsi rksvqidpse qktlanlpwi
     1261 vepgqeakrg intkyettif
//
LOCUS       XP_053922080            1279 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat and sterile alpha motif domain-containing protein 1B
            isoform X2 [Cuculus canorus].
ACCESSION   XP_053922080
VERSION     XP_053922080.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066105.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1279
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1279
                     /product="ankyrin repeat and sterile alpha motif
                     domain-containing protein 1B isoform X2"
                     /calculated_mol_wt=141254
     Region          7..56
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          43..269
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(58,60,64..65,68..70,72..73,77,80,89,91,93,97..98,
                     101..103,105..106,110,113,125,127,129,133..134,137..139,
                     141..142,146,149,158)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          58..89
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          91..125
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          127..158
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          160..191
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          193..223
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          226..256
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          810..876
                     /region_name="SAM_AIDA1AB-like_repeat1"
                     /note="SAM domain of AIDA1AB-like proteins, repeat 1;
                     cd09499"
                     /db_xref="CDD:188898"
     Site            order(832..835,837,839..840,843..844,846..847,850,
                     853..854)
                     /site_type="other"
                     /note="intramolecular dimer interface ML [polypeptide
                     binding]"
                     /db_xref="CDD:188898"
     Region          881..945
                     /region_name="SAM_AIDA1AB-like_repeat2"
                     /note="SAM domain of AIDA1AB-like proteins, repeat 2;
                     cd09500"
                     /db_xref="CDD:188899"
     Site            order(931..934,936..937)
                     /site_type="other"
                     /note="intramolecular dimer interface EH [polypeptide
                     binding]"
                     /db_xref="CDD:188899"
     Region          1069..1214
                     /region_name="PTB_Anks"
                     /note="Ankyrin repeat and sterile alpha motif (SAM)
                     domain-containing (Anks) protein family
                     Phosphotyrosine-binding (PTB) domain; cd01274"
                     /db_xref="CDD:269972"
     Site            order(1088,1163,1183)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:269972"
     Site            order(1152..1157,1170,1194,1198)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:269972"
     CDS             1..1279
                     /gene="ANKS1B"
                     /coded_by="XM_054066105.1:180..4019"
                     /db_xref="GeneID:104055180"
ORIGIN      
        1 mgkdqellea artgnvalve kllsgrkggi lgsgsgaipl ssllsiwrgp ninctdssgy
       61 talhhaalng hkdivlkllq yeastnvadn kgyfpihlaa wrgdvdivki lihhgpshsr
      121 vneqnnenet alhcaaqygh sevvavllee ltdptirnnk letpldlaal ygrlrvvkmi
      181 ikaypnlmnc ntrkhtplhl aarnghkavv qvlleagmdv scqtekgsal heaalfgkve
      241 vvrvlletgi dtnikdslgr tvldilkehp sqqslqiaal lqeymetgsa siseerplec
      301 aehqscvlss evppspkaks eavtgelskl ldeiklcqek eysfedlsht isdhyldnfs
      361 kvseeelmts gsqtklnvrp sstclspree edddagentc gpsglwealt pcngcrnlgf
      421 pmlaqesysk krgyaleais svpldavpse ndsslcgsvd vavtkkpcsl eiarvpssrp
      481 dnapqvaita pgsgnhrnss tgptpdcspp spdtalksiv kvirpqpkqr tsivsslefh
      541 rmnhshnyfe inssigctrf natpatspan yssgsleynv eereiperls kgetstdsel
      601 qegypaeqfa gllhgsspac dppdnplhly skaiqcsspl eksilskttm qqiqlrkesn
      661 ndppmkkkkp pvvnrtifht ktkpvenhtl vgtstriseq wvittggfve ractlgrirs
      721 lpktllemhl cknvsksdsn lithppndkk arsnwseptp sqqcskgnse rtpsftsewe
      781 eidkimslid agintglgem ndhttrprcp vqtvgqwlen iglpqyenhl langfdnvqf
      841 mgsnvmedqd lleigilnsg hrqrilqaiq llpkmkqvgh dgynptsvae wldsielgdy
      901 tksflingyt smdlvkkiwe ielinvlkis lighrkrvla slgdrlhedp pqkpprsitl
      961 repsgnhtpp qlspslsqst fttggsldvp hiimqgdarr rrnenyfddi prsklerqma
     1021 qssvceiwtn qnagypfssi hqvhntgdwg epsitlrppn eatastpvqy wqhhpeklif
     1081 qscdykafyl gsmlvkelrg testqdacak mrksteqmkk vptivlsvsy kgvkfidatn
     1141 kniiaeheir niscaaqdpe dlstfayitk dlktnhhych vftafdvnla yeiiltlgqa
     1201 fevayqlalq arkgghsstl pesfenkpsk pipkprvsir ksvqidpseq ktlanlpwiv
     1261 epgqeakrgi ntkyettif
//
LOCUS       XP_053922088            1279 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat and sterile alpha motif domain-containing protein 1B
            isoform X3 [Cuculus canorus].
ACCESSION   XP_053922088
VERSION     XP_053922088.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066113.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1279
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1279
                     /product="ankyrin repeat and sterile alpha motif
                     domain-containing protein 1B isoform X3"
                     /calculated_mol_wt=141254
     Region          7..56
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          43..269
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(58,60,64..65,68..70,72..73,77,80,89,91,93,97..98,
                     101..103,105..106,110,113,125,127,129,133..134,137..139,
                     141..142,146,149,158)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          58..89
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          91..125
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          127..158
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          160..191
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          193..223
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          226..256
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          810..876
                     /region_name="SAM_AIDA1AB-like_repeat1"
                     /note="SAM domain of AIDA1AB-like proteins, repeat 1;
                     cd09499"
                     /db_xref="CDD:188898"
     Site            order(832..835,837,839..840,843..844,846..847,850,
                     853..854)
                     /site_type="other"
                     /note="intramolecular dimer interface ML [polypeptide
                     binding]"
                     /db_xref="CDD:188898"
     Region          881..945
                     /region_name="SAM_AIDA1AB-like_repeat2"
                     /note="SAM domain of AIDA1AB-like proteins, repeat 2;
                     cd09500"
                     /db_xref="CDD:188899"
     Site            order(931..934,936..937)
                     /site_type="other"
                     /note="intramolecular dimer interface EH [polypeptide
                     binding]"
                     /db_xref="CDD:188899"
     Region          1070..1215
                     /region_name="PTB_Anks"
                     /note="Ankyrin repeat and sterile alpha motif (SAM)
                     domain-containing (Anks) protein family
                     Phosphotyrosine-binding (PTB) domain; cd01274"
                     /db_xref="CDD:269972"
     Site            order(1089,1164,1184)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:269972"
     Site            order(1153..1158,1171,1195,1199)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:269972"
     CDS             1..1279
                     /gene="ANKS1B"
                     /coded_by="XM_054066113.1:180..4019"
                     /db_xref="GeneID:104055180"
ORIGIN      
        1 mgkdqellea artgnvalve kllsgrkggi lgsgsgaipl ssllsiwrgp ninctdssgy
       61 talhhaalng hkdivlkllq yeastnvadn kgyfpihlaa wrgdvdivki lihhgpshsr
      121 vneqnnenet alhcaaqygh sevvavllee ltdptirnnk letpldlaal ygrlrvvkmi
      181 ikaypnlmnc ntrkhtplhl aarnghkavv qvlleagmdv scqtekgsal heaalfgkve
      241 vvrvlletgi dtnikdslgr tvldilkehp sqqslqiaal lqeymetgsa siseerplec
      301 aehqscvlss evppspkaks eavtgelskl ldeiklcqek eysfedlsht isdhyldnfs
      361 kvseeelmts gsqtklnvrp sstclspree edddagentc gpsglwealt pcngcrnlgf
      421 pmlaqesysk krgyaleais svpldavpse ndsslcgsvd vavtkkpcsl eiarvpssrp
      481 dnapqvaita pgsgnhrnss tgptpdcspp spdtalksiv kvirpqpkqr tsivsslefh
      541 rmnhshnyfe inssigctrf natpatspan yssgsleynv eereiperls kgetstdsel
      601 qegypaeqfa gllhgsspac dppdnplhly skaiqcsspl eksilskttm qqiqlrkesn
      661 ndppmkkkkp pvvnrtifht ktkpvenhtl vgtstriseq wvittggfve ractlgrirs
      721 lpktllemhl cknvsksdsn lithppndkk arsnwseptp sqqcskgnse rtpsftsewe
      781 eidkimslid agintglgem ndhttrprcp vqtvgqwlen iglpqyenhl langfdnvqf
      841 mgsnvmedqd lleigilnsg hrqrilqaiq llpkmkqvgh dgynptsvae wldsielgdy
      901 tksflingyt smdlvkkiwe ielinvlkis lighrkrvla slgdrlhedp pqkpprsitl
      961 repsgnhtpp qlspslsqst fttggsldvp hiimqgdarr rrnenyfddi prsklerqma
     1021 qqssvceiwt nqnagypfss ihqvhntgdw gepsitlrpp neatastpvq ywqhhpekli
     1081 fqscdykafy lgsmlvkelr gtestqdaca kmrksteqmk kvptivlsvs ykgvkfidat
     1141 nkniiaehei rniscaaqdp edlstfayit kdlktnhhyc hvftafdvnl ayeiiltlgq
     1201 afevayqlal qarkgghsst lpesfenkps kpipkprvsi rksvidpseq ktlanlpwiv
     1261 epgqeakrgi ntkyettif
//
LOCUS       XP_053922097            1279 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat and sterile alpha motif domain-containing protein 1B
            isoform X4 [Cuculus canorus].
ACCESSION   XP_053922097
VERSION     XP_053922097.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066122.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1279
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1279
                     /product="ankyrin repeat and sterile alpha motif
                     domain-containing protein 1B isoform X4"
                     /calculated_mol_wt=141254
     Region          7..56
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          43..269
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(58,60,64..65,68..70,72..73,77,80,89,91,93,97..98,
                     101..103,105..106,110,113,125,127,129,133..134,137..139,
                     141..142,146,149,158)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          58..89
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          91..125
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          127..158
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          160..191
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          193..223
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          226..256
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          810..876
                     /region_name="SAM_AIDA1AB-like_repeat1"
                     /note="SAM domain of AIDA1AB-like proteins, repeat 1;
                     cd09499"
                     /db_xref="CDD:188898"
     Site            order(832..835,837,839..840,843..844,846..847,850,
                     853..854)
                     /site_type="other"
                     /note="intramolecular dimer interface ML [polypeptide
                     binding]"
                     /db_xref="CDD:188898"
     Region          881..945
                     /region_name="SAM_AIDA1AB-like_repeat2"
                     /note="SAM domain of AIDA1AB-like proteins, repeat 2;
                     cd09500"
                     /db_xref="CDD:188899"
     Site            order(931..934,936..937)
                     /site_type="other"
                     /note="intramolecular dimer interface EH [polypeptide
                     binding]"
                     /db_xref="CDD:188899"
     Region          1070..1214
                     /region_name="PTB_Anks"
                     /note="Ankyrin repeat and sterile alpha motif (SAM)
                     domain-containing (Anks) protein family
                     Phosphotyrosine-binding (PTB) domain; cd01274"
                     /db_xref="CDD:269972"
     Site            order(1089,1163,1183)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:269972"
     Site            order(1152..1157,1170,1194,1198)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:269972"
     CDS             1..1279
                     /gene="ANKS1B"
                     /coded_by="XM_054066122.1:180..4019"
                     /db_xref="GeneID:104055180"
ORIGIN      
        1 mgkdqellea artgnvalve kllsgrkggi lgsgsgaipl ssllsiwrgp ninctdssgy
       61 talhhaalng hkdivlkllq yeastnvadn kgyfpihlaa wrgdvdivki lihhgpshsr
      121 vneqnnenet alhcaaqygh sevvavllee ltdptirnnk letpldlaal ygrlrvvkmi
      181 ikaypnlmnc ntrkhtplhl aarnghkavv qvlleagmdv scqtekgsal heaalfgkve
      241 vvrvlletgi dtnikdslgr tvldilkehp sqqslqiaal lqeymetgsa siseerplec
      301 aehqscvlss evppspkaks eavtgelskl ldeiklcqek eysfedlsht isdhyldnfs
      361 kvseeelmts gsqtklnvrp sstclspree edddagentc gpsglwealt pcngcrnlgf
      421 pmlaqesysk krgyaleais svpldavpse ndsslcgsvd vavtkkpcsl eiarvpssrp
      481 dnapqvaita pgsgnhrnss tgptpdcspp spdtalksiv kvirpqpkqr tsivsslefh
      541 rmnhshnyfe inssigctrf natpatspan yssgsleynv eereiperls kgetstdsel
      601 qegypaeqfa gllhgsspac dppdnplhly skaiqcsspl eksilskttm qqiqlrkesn
      661 ndppmkkkkp pvvnrtifht ktkpvenhtl vgtstriseq wvittggfve ractlgrirs
      721 lpktllemhl cknvsksdsn lithppndkk arsnwseptp sqqcskgnse rtpsftsewe
      781 eidkimslid agintglgem ndhttrprcp vqtvgqwlen iglpqyenhl langfdnvqf
      841 mgsnvmedqd lleigilnsg hrqrilqaiq llpkmkqvgh dgynptsvae wldsielgdy
      901 tksflingyt smdlvkkiwe ielinvlkis lighrkrvla slgdrlhedp pqkpprsitl
      961 repsgnhtpp qlspslsqst fttggsldvp hiimqgdarr rrnenyfddi prsklerqma
     1021 qqssvceiwt nqnagypfss ihqvhntgdw gepsitlrpp neatastpvq ywqhhpekli
     1081 fqscdykafy lgsmlvkelr gtestqdaca kmrsteqmkk vptivlsvsy kgvkfidatn
     1141 kniiaeheir niscaaqdpe dlstfayitk dlktnhhych vftafdvnla yeiiltlgqa
     1201 fevayqlalq arkgghsstl pesfenkpsk pipkprvsir ksvqidpseq ktlanlpwiv
     1261 epgqeakrgi ntkyettif
//
LOCUS       XP_053922104            1255 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat and sterile alpha motif domain-containing protein 1B
            isoform X5 [Cuculus canorus].
ACCESSION   XP_053922104
VERSION     XP_053922104.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066129.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1255
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1255
                     /product="ankyrin repeat and sterile alpha motif
                     domain-containing protein 1B isoform X5"
                     /calculated_mol_wt=138553
     Region          7..56
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          43..269
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(58,60,64..65,68..70,72..73,77,80,89,91,93,97..98,
                     101..103,105..106,110,113,125,127,129,133..134,137..139,
                     141..142,146,149,158)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          58..89
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          91..125
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          127..158
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          160..191
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          193..223
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          226..256
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          810..876
                     /region_name="SAM_AIDA1AB-like_repeat1"
                     /note="SAM domain of AIDA1AB-like proteins, repeat 1;
                     cd09499"
                     /db_xref="CDD:188898"
     Site            order(832..835,837,839..840,843..844,846..847,850,
                     853..854)
                     /site_type="other"
                     /note="intramolecular dimer interface ML [polypeptide
                     binding]"
                     /db_xref="CDD:188898"
     Region          881..945
                     /region_name="SAM_AIDA1AB-like_repeat2"
                     /note="SAM domain of AIDA1AB-like proteins, repeat 2;
                     cd09500"
                     /db_xref="CDD:188899"
     Site            order(931..934,936..937)
                     /site_type="other"
                     /note="intramolecular dimer interface EH [polypeptide
                     binding]"
                     /db_xref="CDD:188899"
     Region          1045..1190
                     /region_name="PTB_Anks"
                     /note="Ankyrin repeat and sterile alpha motif (SAM)
                     domain-containing (Anks) protein family
                     Phosphotyrosine-binding (PTB) domain; cd01274"
                     /db_xref="CDD:269972"
     Site            order(1064,1139,1159)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:269972"
     Site            order(1128..1133,1146,1170,1174)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:269972"
     CDS             1..1255
                     /gene="ANKS1B"
                     /coded_by="XM_054066129.1:180..3947"
                     /db_xref="GeneID:104055180"
ORIGIN      
        1 mgkdqellea artgnvalve kllsgrkggi lgsgsgaipl ssllsiwrgp ninctdssgy
       61 talhhaalng hkdivlkllq yeastnvadn kgyfpihlaa wrgdvdivki lihhgpshsr
      121 vneqnnenet alhcaaqygh sevvavllee ltdptirnnk letpldlaal ygrlrvvkmi
      181 ikaypnlmnc ntrkhtplhl aarnghkavv qvlleagmdv scqtekgsal heaalfgkve
      241 vvrvlletgi dtnikdslgr tvldilkehp sqqslqiaal lqeymetgsa siseerplec
      301 aehqscvlss evppspkaks eavtgelskl ldeiklcqek eysfedlsht isdhyldnfs
      361 kvseeelmts gsqtklnvrp sstclspree edddagentc gpsglwealt pcngcrnlgf
      421 pmlaqesysk krgyaleais svpldavpse ndsslcgsvd vavtkkpcsl eiarvpssrp
      481 dnapqvaita pgsgnhrnss tgptpdcspp spdtalksiv kvirpqpkqr tsivsslefh
      541 rmnhshnyfe inssigctrf natpatspan yssgsleynv eereiperls kgetstdsel
      601 qegypaeqfa gllhgsspac dppdnplhly skaiqcsspl eksilskttm qqiqlrkesn
      661 ndppmkkkkp pvvnrtifht ktkpvenhtl vgtstriseq wvittggfve ractlgrirs
      721 lpktllemhl cknvsksdsn lithppndkk arsnwseptp sqqcskgnse rtpsftsewe
      781 eidkimslid agintglgem ndhttrprcp vqtvgqwlen iglpqyenhl langfdnvqf
      841 mgsnvmedqd lleigilnsg hrqrilqaiq llpkmkqvgh dgynptsvae wldsielgdy
      901 tksflingyt smdlvkkiwe ielinvlkis lighrkrvla slgdrlhedp pqkpprsitl
      961 repsgnhtpp qlspslsqst fttggsldvp hiimqgdarr rrnenyfddi prsklerqma
     1021 qtgdwgepsi tlrppneata stpvqywqhh peklifqscd ykafylgsml vkelrgtest
     1081 qdacakmrks teqmkkvpti vlsvsykgvk fidatnknii aeheirnisc aaqdpedlst
     1141 fayitkdlkt nhhychvfta fdvnlayeii ltlgqafeva yqlalqarkg ghsstlpesf
     1201 enkpskpipk prvsirksvq idpseqktla nlpwivepgq eakrgintky ettif
//
LOCUS       XP_053922112            1243 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat and sterile alpha motif domain-containing protein 1B
            isoform X6 [Cuculus canorus].
ACCESSION   XP_053922112
VERSION     XP_053922112.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066137.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1243
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1243
                     /product="ankyrin repeat and sterile alpha motif
                     domain-containing protein 1B isoform X6"
                     /calculated_mol_wt=137363
     Region          7..56
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          43..295
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(58,60,64..65,68..70,72..73,77,80,89,91,93,97..98,
                     101..103,105..106,110,113,125,127,129,133..134,137..139,
                     141..142,146,149,158)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          58..89
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          91..125
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          127..158
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          160..191
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          193..223
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          226..256
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          773..839
                     /region_name="SAM_AIDA1AB-like_repeat1"
                     /note="SAM domain of AIDA1AB-like proteins, repeat 1;
                     cd09499"
                     /db_xref="CDD:188898"
     Site            order(795..798,800,802..803,806..807,809..810,813,
                     816..817)
                     /site_type="other"
                     /note="intramolecular dimer interface ML [polypeptide
                     binding]"
                     /db_xref="CDD:188898"
     Region          844..908
                     /region_name="SAM_AIDA1AB-like_repeat2"
                     /note="SAM domain of AIDA1AB-like proteins, repeat 2;
                     cd09500"
                     /db_xref="CDD:188899"
     Site            order(894..897,899..900)
                     /site_type="other"
                     /note="intramolecular dimer interface EH [polypeptide
                     binding]"
                     /db_xref="CDD:188899"
     Region          1033..1178
                     /region_name="PTB_Anks"
                     /note="Ankyrin repeat and sterile alpha motif (SAM)
                     domain-containing (Anks) protein family
                     Phosphotyrosine-binding (PTB) domain; cd01274"
                     /db_xref="CDD:269972"
     Site            order(1052,1127,1147)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:269972"
     Site            order(1116..1121,1134,1158,1162)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:269972"
     CDS             1..1243
                     /gene="ANKS1B"
                     /coded_by="XM_054066137.1:180..3911"
                     /db_xref="GeneID:104055180"
ORIGIN      
        1 mgkdqellea artgnvalve kllsgrkggi lgsgsgaipl ssllsiwrgp ninctdssgy
       61 talhhaalng hkdivlkllq yeastnvadn kgyfpihlaa wrgdvdivki lihhgpshsr
      121 vneqnnenet alhcaaqygh sevvavllee ltdptirnnk letpldlaal ygrlrvvkmi
      181 ikaypnlmnc ntrkhtplhl aarnghkavv qvlleagmdv scqtekgsal heaalfgkve
      241 vvrvlletgi dtnikdslgr tvldilkehp sqqslqiaal lqgeavtgel sklldeiklc
      301 qekeysfedl shtisdhyld nfskvseeel mtsgsqtkln vrpsstclsp reeedddage
      361 ntcgpsglwe altpcngcrn lgfpmlaqes yskkrgyale aissvpldav psendsslcg
      421 svdvavtkkp csleiarvps srpdnapqva itapgsgnhr nsstgptpdc sppspdtalk
      481 sivkvirpqp kqrtsivssl efhrmnhshn yfeinssigc trfnatpats panyssgsle
      541 ynveereipe rlskgetstd selqegypae qfagllhgss pacdppdnpl hlyskaiqcs
      601 spleksilsk ttmqqiqlrk esnndppmkk kkppvvnrti fhtktkpven htlvgtstri
      661 seqwvittgg fveractlgr irslpktlle mhlcknvsks dsnlithppn dkkarsnwse
      721 ptpsqqcskg nsertpsfts eweeidkims lidagintgl gemndhttrp rcpvqtvgqw
      781 leniglpqye nhllangfdn vqfmgsnvme dqdlleigil nsghrqrilq aiqllpkmkq
      841 vghdgynpts vaewldsiel gdytksflin gytsmdlvkk iweielinvl kislighrkr
      901 vlaslgdrlh edppqkpprs itlrepsgnh tppqlspsls qstfttggsl dvphiimqgd
      961 arrrrnenyf ddiprskler qmaqqssvce iwtnqnagyp fssihqvhnt gdwgepsitl
     1021 rppneatast pvqywqhhpe klifqscdyk afylgsmlvk elrgtestqd acakmrkste
     1081 qmkkvptivl svsykgvkfi datnkniiae heirniscaa qdpedlstfa yitkdlktnh
     1141 hychvftafd vnlayeiilt lgqafevayq lalqarkggh sstlpesfen kpskpipkpr
     1201 vsirksvqid pseqktlanl pwivepgqea krgintkyet tif
//
LOCUS       XP_053922118             505 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat and sterile alpha motif domain-containing protein 1B
            isoform X7 [Cuculus canorus].
ACCESSION   XP_053922118
VERSION     XP_053922118.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066143.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..505
                     /product="ankyrin repeat and sterile alpha motif
                     domain-containing protein 1B isoform X7"
                     /calculated_mol_wt=57102
     Region          36..102
                     /region_name="SAM_AIDA1AB-like_repeat1"
                     /note="SAM domain of AIDA1AB-like proteins, repeat 1;
                     cd09499"
                     /db_xref="CDD:188898"
     Site            order(58..61,63,65..66,69..70,72..73,76,79..80)
                     /site_type="other"
                     /note="intramolecular dimer interface ML [polypeptide
                     binding]"
                     /db_xref="CDD:188898"
     Region          107..171
                     /region_name="SAM_AIDA1AB-like_repeat2"
                     /note="SAM domain of AIDA1AB-like proteins, repeat 2;
                     cd09500"
                     /db_xref="CDD:188899"
     Site            order(157..160,162..163)
                     /site_type="other"
                     /note="intramolecular dimer interface EH [polypeptide
                     binding]"
                     /db_xref="CDD:188899"
     Region          295..440
                     /region_name="PTB_Anks"
                     /note="Ankyrin repeat and sterile alpha motif (SAM)
                     domain-containing (Anks) protein family
                     Phosphotyrosine-binding (PTB) domain; cd01274"
                     /db_xref="CDD:269972"
     Site            order(314,389,409)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:269972"
     Site            order(378..383,396,420,424)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:269972"
     CDS             1..505
                     /gene="ANKS1B"
                     /coded_by="XM_054066143.1:325..1842"
                     /db_xref="GeneID:104055180"
ORIGIN      
        1 mwqchlsaqd yryypvdgys llkrlplhpp tgprcpvqtv gqwleniglp qyenhllang
       61 fdnvqfmgsn vmedqdllei gilnsghrqr ilqaiqllpk mkqvghdgyn ptsvaewlds
      121 ielgdytksf lingytsmdl vkkiweieli nvlkisligh rkrvlaslgd rlhedppqkp
      181 prsitlreps gnhtppqlsp slsqstfttg gsldvphiim qgdarrrrne nyfddiprsk
      241 lerqmaqssv ceiwtnqnag ypfssihqvh ntgdwgepsi tlrppneata stpvqywqhh
      301 peklifqscd ykafylgsml vkelrgtest qdacakmrks teqmkkvpti vlsvsykgvk
      361 fidatnknii aeheirnisc aaqdpedlst fayitkdlkt nhhychvfta fdvnlayeii
      421 ltlgqafeva yqlalqarkg ghsstlpesf enkpskpipk prvsirksvq idpseqktla
      481 nlpwivepgq eakrgintky ettif
//
LOCUS       XP_053922124             481 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat and sterile alpha motif domain-containing protein 1B
            isoform X8 [Cuculus canorus].
ACCESSION   XP_053922124
VERSION     XP_053922124.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066149.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..481
                     /product="ankyrin repeat and sterile alpha motif
                     domain-containing protein 1B isoform X8"
                     /calculated_mol_wt=54401
     Region          36..102
                     /region_name="SAM_AIDA1AB-like_repeat1"
                     /note="SAM domain of AIDA1AB-like proteins, repeat 1;
                     cd09499"
                     /db_xref="CDD:188898"
     Site            order(58..61,63,65..66,69..70,72..73,76,79..80)
                     /site_type="other"
                     /note="intramolecular dimer interface ML [polypeptide
                     binding]"
                     /db_xref="CDD:188898"
     Region          107..171
                     /region_name="SAM_AIDA1AB-like_repeat2"
                     /note="SAM domain of AIDA1AB-like proteins, repeat 2;
                     cd09500"
                     /db_xref="CDD:188899"
     Site            order(157..160,162..163)
                     /site_type="other"
                     /note="intramolecular dimer interface EH [polypeptide
                     binding]"
                     /db_xref="CDD:188899"
     Region          271..416
                     /region_name="PTB_Anks"
                     /note="Ankyrin repeat and sterile alpha motif (SAM)
                     domain-containing (Anks) protein family
                     Phosphotyrosine-binding (PTB) domain; cd01274"
                     /db_xref="CDD:269972"
     Site            order(290,365,385)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:269972"
     Site            order(354..359,372,396,400)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:269972"
     CDS             1..481
                     /gene="ANKS1B"
                     /coded_by="XM_054066149.1:323..1768"
                     /db_xref="GeneID:104055180"
ORIGIN      
        1 mwqchlsaqd yryypvdgys llkrlplhpp tgprcpvqtv gqwleniglp qyenhllang
       61 fdnvqfmgsn vmedqdllei gilnsghrqr ilqaiqllpk mkqvghdgyn ptsvaewlds
      121 ielgdytksf lingytsmdl vkkiweieli nvlkisligh rkrvlaslgd rlhedppqkp
      181 prsitlreps gnhtppqlsp slsqstfttg gsldvphiim qgdarrrrne nyfddiprsk
      241 lerqmaqtgd wgepsitlrp pneatastpv qywqhhpekl ifqscdykaf ylgsmlvkel
      301 rgtestqdac akmrksteqm kkvptivlsv sykgvkfida tnkniiaehe irniscaaqd
      361 pedlstfayi tkdlktnhhy chvftafdvn layeiiltlg qafevayqla lqarkgghss
      421 tlpesfenkp skpipkprvs irksvqidps eqktlanlpw ivepgqeakr gintkyetti
      481 f
//
LOCUS       XP_053922133             287 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat and sterile alpha motif domain-containing protein 1B
            isoform X9 [Cuculus canorus].
ACCESSION   XP_053922133
VERSION     XP_053922133.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066158.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..287
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..287
                     /product="ankyrin repeat and sterile alpha motif
                     domain-containing protein 1B isoform X9"
                     /calculated_mol_wt=32538
     Region          77..222
                     /region_name="PTB_Anks"
                     /note="Ankyrin repeat and sterile alpha motif (SAM)
                     domain-containing (Anks) protein family
                     Phosphotyrosine-binding (PTB) domain; cd01274"
                     /db_xref="CDD:269972"
     Site            order(96,171,191)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:269972"
     Site            order(160..165,178,202,206)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:269972"
     CDS             1..287
                     /gene="ANKS1B"
                     /coded_by="XM_054066158.1:343..1206"
                     /db_xref="GeneID:104055180"
ORIGIN      
        1 mqgdarrrrn enyfddiprs klerqmaqqs svceiwtnqn agypfssihq vhntgdwgep
       61 sitlrppnea tastpvqywq hhpeklifqs cdykafylgs mlvkelrgte stqdacakmr
      121 ksteqmkkvp tivlsvsykg vkfidatnkn iiaeheirni scaaqdpedl stfayitkdl
      181 ktnhhychvf tafdvnlaye iiltlgqafe vayqlalqar kgghsstlpe sfenkpskpi
      241 pkprvsirks vqidpseqkt lanlpwivep gqeakrgint kyettif
//
LOCUS       XP_053922141            1278 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat and sterile alpha motif domain-containing protein 1B
            isoform X10 [Cuculus canorus].
ACCESSION   XP_053922141
VERSION     XP_053922141.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066166.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1278
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1278
                     /product="ankyrin repeat and sterile alpha motif
                     domain-containing protein 1B isoform X10"
                     /calculated_mol_wt=141126
     Region          7..56
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          43..269
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(58,60,64..65,68..70,72..73,77,80,89,91,93,97..98,
                     101..103,105..106,110,113,125,127,129,133..134,137..139,
                     141..142,146,149,158)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          58..89
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          91..125
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          127..158
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          160..191
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          193..223
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          226..256
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          810..876
                     /region_name="SAM_AIDA1AB-like_repeat1"
                     /note="SAM domain of AIDA1AB-like proteins, repeat 1;
                     cd09499"
                     /db_xref="CDD:188898"
     Site            order(832..835,837,839..840,843..844,846..847,850,
                     853..854)
                     /site_type="other"
                     /note="intramolecular dimer interface ML [polypeptide
                     binding]"
                     /db_xref="CDD:188898"
     Region          881..945
                     /region_name="SAM_AIDA1AB-like_repeat2"
                     /note="SAM domain of AIDA1AB-like proteins, repeat 2;
                     cd09500"
                     /db_xref="CDD:188899"
     Site            order(931..934,936..937)
                     /site_type="other"
                     /note="intramolecular dimer interface EH [polypeptide
                     binding]"
                     /db_xref="CDD:188899"
     Region          1069..1214
                     /region_name="PTB_Anks"
                     /note="Ankyrin repeat and sterile alpha motif (SAM)
                     domain-containing (Anks) protein family
                     Phosphotyrosine-binding (PTB) domain; cd01274"
                     /db_xref="CDD:269972"
     Site            order(1088,1163,1183)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:269972"
     Site            order(1152..1157,1170,1194,1198)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:269972"
     CDS             1..1278
                     /gene="ANKS1B"
                     /coded_by="XM_054066166.1:180..4016"
                     /db_xref="GeneID:104055180"
ORIGIN      
        1 mgkdqellea artgnvalve kllsgrkggi lgsgsgaipl ssllsiwrgp ninctdssgy
       61 talhhaalng hkdivlkllq yeastnvadn kgyfpihlaa wrgdvdivki lihhgpshsr
      121 vneqnnenet alhcaaqygh sevvavllee ltdptirnnk letpldlaal ygrlrvvkmi
      181 ikaypnlmnc ntrkhtplhl aarnghkavv qvlleagmdv scqtekgsal heaalfgkve
      241 vvrvlletgi dtnikdslgr tvldilkehp sqqslqiaal lqeymetgsa siseerplec
      301 aehqscvlss evppspkaks eavtgelskl ldeiklcqek eysfedlsht isdhyldnfs
      361 kvseeelmts gsqtklnvrp sstclspree edddagentc gpsglwealt pcngcrnlgf
      421 pmlaqesysk krgyaleais svpldavpse ndsslcgsvd vavtkkpcsl eiarvpssrp
      481 dnapqvaita pgsgnhrnss tgptpdcspp spdtalksiv kvirpqpkqr tsivsslefh
      541 rmnhshnyfe inssigctrf natpatspan yssgsleynv eereiperls kgetstdsel
      601 qegypaeqfa gllhgsspac dppdnplhly skaiqcsspl eksilskttm qqiqlrkesn
      661 ndppmkkkkp pvvnrtifht ktkpvenhtl vgtstriseq wvittggfve ractlgrirs
      721 lpktllemhl cknvsksdsn lithppndkk arsnwseptp sqqcskgnse rtpsftsewe
      781 eidkimslid agintglgem ndhttrprcp vqtvgqwlen iglpqyenhl langfdnvqf
      841 mgsnvmedqd lleigilnsg hrqrilqaiq llpkmkqvgh dgynptsvae wldsielgdy
      901 tksflingyt smdlvkkiwe ielinvlkis lighrkrvla slgdrlhedp pqkpprsitl
      961 repsgnhtpp qlspslsqst fttggsldvp hiimqgdarr rrnenyfddi prsklerqma
     1021 qssvceiwtn qnagypfssi hqvhntgdwg epsitlrppn eatastpvqy wqhhpeklif
     1081 qscdykafyl gsmlvkelrg testqdacak mrksteqmkk vptivlsvsy kgvkfidatn
     1141 kniiaeheir niscaaqdpe dlstfayitk dlktnhhych vftafdvnla yeiiltlgqa
     1201 fevayqlalq arkgghsstl pesfenkpsk pipkprvsir ksvidpseqk tlanlpwive
     1261 pgqeakrgin tkyettif
//
LOCUS       XP_053922144            1254 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat and sterile alpha motif domain-containing protein 1B
            isoform X11 [Cuculus canorus].
ACCESSION   XP_053922144
VERSION     XP_053922144.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066169.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1254
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1254
                     /product="ankyrin repeat and sterile alpha motif
                     domain-containing protein 1B isoform X11"
                     /calculated_mol_wt=138425
     Region          7..56
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          43..269
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(58,60,64..65,68..70,72..73,77,80,89,91,93,97..98,
                     101..103,105..106,110,113,125,127,129,133..134,137..139,
                     141..142,146,149,158)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          58..89
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          91..125
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          127..158
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          160..191
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          193..223
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          226..256
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          810..876
                     /region_name="SAM_AIDA1AB-like_repeat1"
                     /note="SAM domain of AIDA1AB-like proteins, repeat 1;
                     cd09499"
                     /db_xref="CDD:188898"
     Site            order(832..835,837,839..840,843..844,846..847,850,
                     853..854)
                     /site_type="other"
                     /note="intramolecular dimer interface ML [polypeptide
                     binding]"
                     /db_xref="CDD:188898"
     Region          881..945
                     /region_name="SAM_AIDA1AB-like_repeat2"
                     /note="SAM domain of AIDA1AB-like proteins, repeat 2;
                     cd09500"
                     /db_xref="CDD:188899"
     Site            order(931..934,936..937)
                     /site_type="other"
                     /note="intramolecular dimer interface EH [polypeptide
                     binding]"
                     /db_xref="CDD:188899"
     Region          1045..1190
                     /region_name="PTB_Anks"
                     /note="Ankyrin repeat and sterile alpha motif (SAM)
                     domain-containing (Anks) protein family
                     Phosphotyrosine-binding (PTB) domain; cd01274"
                     /db_xref="CDD:269972"
     Site            order(1064,1139,1159)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:269972"
     Site            order(1128..1133,1146,1170,1174)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:269972"
     CDS             1..1254
                     /gene="ANKS1B"
                     /coded_by="XM_054066169.1:180..3944"
                     /db_xref="GeneID:104055180"
ORIGIN      
        1 mgkdqellea artgnvalve kllsgrkggi lgsgsgaipl ssllsiwrgp ninctdssgy
       61 talhhaalng hkdivlkllq yeastnvadn kgyfpihlaa wrgdvdivki lihhgpshsr
      121 vneqnnenet alhcaaqygh sevvavllee ltdptirnnk letpldlaal ygrlrvvkmi
      181 ikaypnlmnc ntrkhtplhl aarnghkavv qvlleagmdv scqtekgsal heaalfgkve
      241 vvrvlletgi dtnikdslgr tvldilkehp sqqslqiaal lqeymetgsa siseerplec
      301 aehqscvlss evppspkaks eavtgelskl ldeiklcqek eysfedlsht isdhyldnfs
      361 kvseeelmts gsqtklnvrp sstclspree edddagentc gpsglwealt pcngcrnlgf
      421 pmlaqesysk krgyaleais svpldavpse ndsslcgsvd vavtkkpcsl eiarvpssrp
      481 dnapqvaita pgsgnhrnss tgptpdcspp spdtalksiv kvirpqpkqr tsivsslefh
      541 rmnhshnyfe inssigctrf natpatspan yssgsleynv eereiperls kgetstdsel
      601 qegypaeqfa gllhgsspac dppdnplhly skaiqcsspl eksilskttm qqiqlrkesn
      661 ndppmkkkkp pvvnrtifht ktkpvenhtl vgtstriseq wvittggfve ractlgrirs
      721 lpktllemhl cknvsksdsn lithppndkk arsnwseptp sqqcskgnse rtpsftsewe
      781 eidkimslid agintglgem ndhttrprcp vqtvgqwlen iglpqyenhl langfdnvqf
      841 mgsnvmedqd lleigilnsg hrqrilqaiq llpkmkqvgh dgynptsvae wldsielgdy
      901 tksflingyt smdlvkkiwe ielinvlkis lighrkrvla slgdrlhedp pqkpprsitl
      961 repsgnhtpp qlspslsqst fttggsldvp hiimqgdarr rrnenyfddi prsklerqma
     1021 qtgdwgepsi tlrppneata stpvqywqhh peklifqscd ykafylgsml vkelrgtest
     1081 qdacakmrks teqmkkvpti vlsvsykgvk fidatnknii aeheirnisc aaqdpedlst
     1141 fayitkdlkt nhhychvfta fdvnlayeii ltlgqafeva yqlalqarkg ghsstlpesf
     1201 enkpskpipk prvsirksvi dpseqktlan lpwivepgqe akrgintkye ttif
//
LOCUS       XP_053922153             279 aa            linear   VRT 09-MAR-2023
DEFINITION  four and a half LIM domains protein 2 [Cuculus canorus].
ACCESSION   XP_053922153
VERSION     XP_053922153.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066178.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..279
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..279
                     /product="four and a half LIM domains protein 2"
                     /calculated_mol_wt=32227
     Region          <5..33
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cl02475"
                     /db_xref="CDD:413332"
     Region          36..97
                     /region_name="LIM1_FHL2"
                     /note="The first LIM domain of Four and a half LIM domains
                     protein 2 (FHL2); cd09422"
                     /db_xref="CDD:188806"
     Site            order(40,43,62,65,68,71,89,92)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188806"
     Region          101..157
                     /region_name="LIM2_FHL2"
                     /note="The second LIM domain of Four and a half LIM
                     domains protein 2 (FHL2); cd09426"
                     /db_xref="CDD:188810"
     Site            order(101,104,123,126,129,132,150,153)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188810"
     Region          162..218
                     /region_name="LIM3_Fhl2"
                     /note="The third LIM domain of Four and a half LIM domains
                     protein 2 (FHL2); cd09431"
                     /db_xref="CDD:188815"
     Site            order(162,165,182,185,188,191,209,212)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188815"
     Region          221..278
                     /region_name="LIM4_FHL2"
                     /note="The fourth LIM domain of Four and a half LIM
                     domains protein 2 (FHL2); cd09433"
                     /db_xref="CDD:188817"
     Site            order(221,224,245,248,251,254,272,275)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188817"
     CDS             1..279
                     /gene="FHL2"
                     /coded_by="XM_054066178.1:177..1016"
                     /db_xref="GeneID:104056633"
ORIGIN      
        1 mterfdchyc neslfgkkyi lkedspycvk cyenlysntc eeckkpigad ckdlsykdrh
       61 wheacfhcfq cknslvdkpf aakeehllct dcysneyssk cneckktimp gtrkmeykgn
      121 swhetcficy rcqqpigtks fipkdnqnfc vpcyekqfam qcvqckkait tggvtyreqp
      181 whkecfvctg ckkqlsgqrf tsrdefaycl scfcnlyakk cagctnpisg lggtkyisfe
      241 erqwhndcfn ckkcslslvg rgflterddi lcpecgkdi
//
LOCUS       XP_009556196             279 aa            linear   VRT 09-MAR-2023
DEFINITION  four and a half LIM domains protein 2 [Cuculus canorus].
ACCESSION   XP_009556196
VERSION     XP_009556196.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557901.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556196.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..279
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..279
                     /product="four and a half LIM domains protein 2"
                     /calculated_mol_wt=32227
     Region          <5..33
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cl02475"
                     /db_xref="CDD:413332"
     Region          36..97
                     /region_name="LIM1_FHL2"
                     /note="The first LIM domain of Four and a half LIM domains
                     protein 2 (FHL2); cd09422"
                     /db_xref="CDD:188806"
     Site            order(40,43,62,65,68,71,89,92)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188806"
     Region          101..157
                     /region_name="LIM2_FHL2"
                     /note="The second LIM domain of Four and a half LIM
                     domains protein 2 (FHL2); cd09426"
                     /db_xref="CDD:188810"
     Site            order(101,104,123,126,129,132,150,153)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188810"
     Region          162..218
                     /region_name="LIM3_Fhl2"
                     /note="The third LIM domain of Four and a half LIM domains
                     protein 2 (FHL2); cd09431"
                     /db_xref="CDD:188815"
     Site            order(162,165,182,185,188,191,209,212)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188815"
     Region          221..278
                     /region_name="LIM4_FHL2"
                     /note="The fourth LIM domain of Four and a half LIM
                     domains protein 2 (FHL2); cd09433"
                     /db_xref="CDD:188817"
     Site            order(221,224,245,248,251,254,272,275)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188817"
     CDS             1..279
                     /gene="FHL2"
                     /coded_by="XM_009557901.2:218..1057"
                     /db_xref="GeneID:104056633"
ORIGIN      
        1 mterfdchyc neslfgkkyi lkedspycvk cyenlysntc eeckkpigad ckdlsykdrh
       61 wheacfhcfq cknslvdkpf aakeehllct dcysneyssk cneckktimp gtrkmeykgn
      121 swhetcficy rcqqpigtks fipkdnqnfc vpcyekqfam qcvqckkait tggvtyreqp
      181 whkecfvctg ckkqlsgqrf tsrdefaycl scfcnlyakk cagctnpisg lggtkyisfe
      241 erqwhndcfn ckkcslslvg rgflterddi lcpecgkdi
//
LOCUS       XP_053922161             279 aa            linear   VRT 09-MAR-2023
DEFINITION  four and a half LIM domains protein 2 [Cuculus canorus].
ACCESSION   XP_053922161
VERSION     XP_053922161.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066186.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..279
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..279
                     /product="four and a half LIM domains protein 2"
                     /calculated_mol_wt=32227
     Region          <5..33
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cl02475"
                     /db_xref="CDD:413332"
     Region          36..97
                     /region_name="LIM1_FHL2"
                     /note="The first LIM domain of Four and a half LIM domains
                     protein 2 (FHL2); cd09422"
                     /db_xref="CDD:188806"
     Site            order(40,43,62,65,68,71,89,92)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188806"
     Region          101..157
                     /region_name="LIM2_FHL2"
                     /note="The second LIM domain of Four and a half LIM
                     domains protein 2 (FHL2); cd09426"
                     /db_xref="CDD:188810"
     Site            order(101,104,123,126,129,132,150,153)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188810"
     Region          162..218
                     /region_name="LIM3_Fhl2"
                     /note="The third LIM domain of Four and a half LIM domains
                     protein 2 (FHL2); cd09431"
                     /db_xref="CDD:188815"
     Site            order(162,165,182,185,188,191,209,212)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188815"
     Region          221..278
                     /region_name="LIM4_FHL2"
                     /note="The fourth LIM domain of Four and a half LIM
                     domains protein 2 (FHL2); cd09433"
                     /db_xref="CDD:188817"
     Site            order(221,224,245,248,251,254,272,275)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188817"
     CDS             1..279
                     /gene="FHL2"
                     /coded_by="XM_054066186.1:149..988"
                     /db_xref="GeneID:104056633"
ORIGIN      
        1 mterfdchyc neslfgkkyi lkedspycvk cyenlysntc eeckkpigad ckdlsykdrh
       61 wheacfhcfq cknslvdkpf aakeehllct dcysneyssk cneckktimp gtrkmeykgn
      121 swhetcficy rcqqpigtks fipkdnqnfc vpcyekqfam qcvqckkait tggvtyreqp
      181 whkecfvctg ckkqlsgqrf tsrdefaycl scfcnlyakk cagctnpisg lggtkyisfe
      241 erqwhndcfn ckkcslslvg rgflterddi lcpecgkdi
//
LOCUS       XP_053922169             279 aa            linear   VRT 09-MAR-2023
DEFINITION  four and a half LIM domains protein 2 [Cuculus canorus].
ACCESSION   XP_053922169
VERSION     XP_053922169.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066194.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..279
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..279
                     /product="four and a half LIM domains protein 2"
                     /calculated_mol_wt=32227
     Region          <5..33
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cl02475"
                     /db_xref="CDD:413332"
     Region          36..97
                     /region_name="LIM1_FHL2"
                     /note="The first LIM domain of Four and a half LIM domains
                     protein 2 (FHL2); cd09422"
                     /db_xref="CDD:188806"
     Site            order(40,43,62,65,68,71,89,92)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188806"
     Region          101..157
                     /region_name="LIM2_FHL2"
                     /note="The second LIM domain of Four and a half LIM
                     domains protein 2 (FHL2); cd09426"
                     /db_xref="CDD:188810"
     Site            order(101,104,123,126,129,132,150,153)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188810"
     Region          162..218
                     /region_name="LIM3_Fhl2"
                     /note="The third LIM domain of Four and a half LIM domains
                     protein 2 (FHL2); cd09431"
                     /db_xref="CDD:188815"
     Site            order(162,165,182,185,188,191,209,212)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188815"
     Region          221..278
                     /region_name="LIM4_FHL2"
                     /note="The fourth LIM domain of Four and a half LIM
                     domains protein 2 (FHL2); cd09433"
                     /db_xref="CDD:188817"
     Site            order(221,224,245,248,251,254,272,275)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188817"
     CDS             1..279
                     /gene="FHL2"
                     /coded_by="XM_054066194.1:213..1052"
                     /db_xref="GeneID:104056633"
ORIGIN      
        1 mterfdchyc neslfgkkyi lkedspycvk cyenlysntc eeckkpigad ckdlsykdrh
       61 wheacfhcfq cknslvdkpf aakeehllct dcysneyssk cneckktimp gtrkmeykgn
      121 swhetcficy rcqqpigtks fipkdnqnfc vpcyekqfam qcvqckkait tggvtyreqp
      181 whkecfvctg ckkqlsgqrf tsrdefaycl scfcnlyakk cagctnpisg lggtkyisfe
      241 erqwhndcfn ckkcslslvg rgflterddi lcpecgkdi
//
LOCUS       XP_053922182             238 aa            linear   VRT 09-MAR-2023
DEFINITION  ashwin [Cuculus canorus].
ACCESSION   XP_053922182
VERSION     XP_053922182.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066207.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..238
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..238
                     /product="ashwin"
                     /calculated_mol_wt=26274
     Region          40..238
                     /region_name="Ashwin"
                     /note="Developmental protein; pfam15323"
                     /db_xref="CDD:464646"
     CDS             1..238
                     /gene="C1H2orf49"
                     /coded_by="XM_054066207.1:14..730"
                     /db_xref="GeneID:104056685"
ORIGIN      
        1 maaqgrsgsg eqwgsareep elllhpells eefllltleq knilvendvk mdkdgltdly
       61 iqhaiplprr dlpksrwgkt mekkrqqndl ksenksvttv eglrkrpliv fdgnststsi
      121 kvkktengaa drlkpppags ttntvrrlsv psnastyisa sslsedakle mrnnetkqnn
      181 isktnssvla slkvyplspv agttvvklkr avpkeesdlp ndlkpveakk kiqhvtwp
//
LOCUS       XP_053922194             789 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protease serine 6 isoform X1 [Cuculus canorus].
ACCESSION   XP_053922194
VERSION     XP_053922194.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066219.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..789
                     /product="transmembrane protease serine 6 isoform X1"
                     /calculated_mol_wt=88459
     Region          64..160
                     /region_name="SEA"
                     /note="SEA domain; pfam01390"
                     /db_xref="CDD:460188"
     Region          223..291
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cl00049"
                     /db_xref="CDD:412131"
     Region          313..428
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cd00041"
                     /db_xref="CDD:238001"
     Site            order(326,328,330,358,363,395,424,426,428)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     Region          437..467
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(440,449,457..458)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(453,457,463..464)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            460..464
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          470..503
                     /region_name="Ldl_recept_a"
                     /note="Low-density lipoprotein receptor domain class A;
                     pfam00057"
                     /db_xref="CDD:395011"
     Site            order(473,482,493..494)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(486,489,493,499..500)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            496..500
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          509..544
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(514,522,534..535)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(527,530,534,540..541)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            537..541
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          555..787
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cd00190"
                     /db_xref="CDD:238113"
     Site            555
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(595,646,740)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(734,760,762)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..789
                     /gene="TMPRSS6"
                     /coded_by="XM_054066219.1:851..3220"
                     /db_xref="GeneID:104065860"
ORIGIN      
        1 meaeeqeeda nsnslskdes etssrdylry vplgiaflll vgaaaatwyf ldyrpwhlep
       61 ailqfysgsl qvlnrqyspd lgrlesrafw lessklqnml keliratelg ryynsstvya
      121 fgegaltfff wfalqipesq qkemtaervn tmlhqelsts fnssgslsyq keyrvnpdsl
      181 vllessvkdi vvlkstlgcy rysyvqeddv lrlegpdyla ssclwhlhgl ngymiklrle
      241 wtlsdcrdrl amydaagple khlitsiygc srqepvvevl ssgpvmsvvw kkamysyydp
      301 filsaqavlv kacevnislq eglelqgkig tphypsyysp ntqctwhmtv psldygvtlw
      361 fdayslsrqk hdlpctqgqw iiqnrrlcgl rtlqayaeri pvtssadivi nftsqisltg
      421 pgiqasysly nlsdpcpref lcsvnglcvp acdgikdcpn glderncvcp akfqchedst
      481 ciefsrvcnq qldcangsde eqcsegvpcs pftylcedgt clkkpnplcd ttadckdlsd
      541 ekhcdcglqa plsrivggan svegewpwqa slqvrgrhic ggtliadrwv vsaahcfqde
      601 rlasasiwtv ylgkylqnst shtevsfkvi rlflhpyyee dshdydvall qldhpvlisp
      661 liqpiclppp shifepglhc witgwgalke gghisnvlqk vdvqliqhdv cseayhymis
      721 prmlcagyqq gkkdacqgds ggplackeps grwflaglvs wgmgcarpdh ygvytritqv
      781 lgwmnqtms
//
LOCUS       XP_009566684             789 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protease serine 6 isoform X1 [Cuculus canorus].
ACCESSION   XP_009566684
VERSION     XP_009566684.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568389.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566684.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..789
                     /product="transmembrane protease serine 6 isoform X1"
                     /calculated_mol_wt=88459
     Region          64..160
                     /region_name="SEA"
                     /note="SEA domain; pfam01390"
                     /db_xref="CDD:460188"
     Region          223..291
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cl00049"
                     /db_xref="CDD:412131"
     Region          313..428
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cd00041"
                     /db_xref="CDD:238001"
     Site            order(326,328,330,358,363,395,424,426,428)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     Region          437..467
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(440,449,457..458)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(453,457,463..464)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            460..464
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          470..503
                     /region_name="Ldl_recept_a"
                     /note="Low-density lipoprotein receptor domain class A;
                     pfam00057"
                     /db_xref="CDD:395011"
     Site            order(473,482,493..494)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(486,489,493,499..500)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            496..500
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          509..544
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(514,522,534..535)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(527,530,534,540..541)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            537..541
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          555..787
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cd00190"
                     /db_xref="CDD:238113"
     Site            555
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(595,646,740)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(734,760,762)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..789
                     /gene="TMPRSS6"
                     /coded_by="XM_009568389.2:851..3220"
                     /db_xref="GeneID:104065860"
ORIGIN      
        1 meaeeqeeda nsnslskdes etssrdylry vplgiaflll vgaaaatwyf ldyrpwhlep
       61 ailqfysgsl qvlnrqyspd lgrlesrafw lessklqnml keliratelg ryynsstvya
      121 fgegaltfff wfalqipesq qkemtaervn tmlhqelsts fnssgslsyq keyrvnpdsl
      181 vllessvkdi vvlkstlgcy rysyvqeddv lrlegpdyla ssclwhlhgl ngymiklrle
      241 wtlsdcrdrl amydaagple khlitsiygc srqepvvevl ssgpvmsvvw kkamysyydp
      301 filsaqavlv kacevnislq eglelqgkig tphypsyysp ntqctwhmtv psldygvtlw
      361 fdayslsrqk hdlpctqgqw iiqnrrlcgl rtlqayaeri pvtssadivi nftsqisltg
      421 pgiqasysly nlsdpcpref lcsvnglcvp acdgikdcpn glderncvcp akfqchedst
      481 ciefsrvcnq qldcangsde eqcsegvpcs pftylcedgt clkkpnplcd ttadckdlsd
      541 ekhcdcglqa plsrivggan svegewpwqa slqvrgrhic ggtliadrwv vsaahcfqde
      601 rlasasiwtv ylgkylqnst shtevsfkvi rlflhpyyee dshdydvall qldhpvlisp
      661 liqpiclppp shifepglhc witgwgalke gghisnvlqk vdvqliqhdv cseayhymis
      721 prmlcagyqq gkkdacqgds ggplackeps grwflaglvs wgmgcarpdh ygvytritqv
      781 lgwmnqtms
//
LOCUS       XP_053922210             789 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protease serine 6 isoform X1 [Cuculus canorus].
ACCESSION   XP_053922210
VERSION     XP_053922210.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066235.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..789
                     /product="transmembrane protease serine 6 isoform X1"
                     /calculated_mol_wt=88459
     Region          64..160
                     /region_name="SEA"
                     /note="SEA domain; pfam01390"
                     /db_xref="CDD:460188"
     Region          223..291
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cl00049"
                     /db_xref="CDD:412131"
     Region          313..428
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cd00041"
                     /db_xref="CDD:238001"
     Site            order(326,328,330,358,363,395,424,426,428)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     Region          437..467
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(440,449,457..458)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(453,457,463..464)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            460..464
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          470..503
                     /region_name="Ldl_recept_a"
                     /note="Low-density lipoprotein receptor domain class A;
                     pfam00057"
                     /db_xref="CDD:395011"
     Site            order(473,482,493..494)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(486,489,493,499..500)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            496..500
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          509..544
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(514,522,534..535)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(527,530,534,540..541)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            537..541
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          555..787
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cd00190"
                     /db_xref="CDD:238113"
     Site            555
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(595,646,740)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(734,760,762)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..789
                     /gene="TMPRSS6"
                     /coded_by="XM_054066235.1:477..2846"
                     /db_xref="GeneID:104065860"
ORIGIN      
        1 meaeeqeeda nsnslskdes etssrdylry vplgiaflll vgaaaatwyf ldyrpwhlep
       61 ailqfysgsl qvlnrqyspd lgrlesrafw lessklqnml keliratelg ryynsstvya
      121 fgegaltfff wfalqipesq qkemtaervn tmlhqelsts fnssgslsyq keyrvnpdsl
      181 vllessvkdi vvlkstlgcy rysyvqeddv lrlegpdyla ssclwhlhgl ngymiklrle
      241 wtlsdcrdrl amydaagple khlitsiygc srqepvvevl ssgpvmsvvw kkamysyydp
      301 filsaqavlv kacevnislq eglelqgkig tphypsyysp ntqctwhmtv psldygvtlw
      361 fdayslsrqk hdlpctqgqw iiqnrrlcgl rtlqayaeri pvtssadivi nftsqisltg
      421 pgiqasysly nlsdpcpref lcsvnglcvp acdgikdcpn glderncvcp akfqchedst
      481 ciefsrvcnq qldcangsde eqcsegvpcs pftylcedgt clkkpnplcd ttadckdlsd
      541 ekhcdcglqa plsrivggan svegewpwqa slqvrgrhic ggtliadrwv vsaahcfqde
      601 rlasasiwtv ylgkylqnst shtevsfkvi rlflhpyyee dshdydvall qldhpvlisp
      661 liqpiclppp shifepglhc witgwgalke gghisnvlqk vdvqliqhdv cseayhymis
      721 prmlcagyqq gkkdacqgds ggplackeps grwflaglvs wgmgcarpdh ygvytritqv
      781 lgwmnqtms
//
LOCUS       XP_053922218             775 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protease serine 6 isoform X2 [Cuculus canorus].
ACCESSION   XP_053922218
VERSION     XP_053922218.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066243.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..775
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..775
                     /product="transmembrane protease serine 6 isoform X2"
                     /calculated_mol_wt=86959
     Region          64..160
                     /region_name="SEA"
                     /note="SEA domain; pfam01390"
                     /db_xref="CDD:460188"
     Region          209..277
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cl00049"
                     /db_xref="CDD:412131"
     Region          299..414
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cd00041"
                     /db_xref="CDD:238001"
     Site            order(312,314,316,344,349,381,410,412,414)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     Region          423..453
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(426,435,443..444)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(439,443,449..450)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            446..450
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          456..489
                     /region_name="Ldl_recept_a"
                     /note="Low-density lipoprotein receptor domain class A;
                     pfam00057"
                     /db_xref="CDD:395011"
     Site            order(459,468,479..480)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(472,475,479,485..486)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            482..486
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          495..530
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(500,508,520..521)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(513,516,520,526..527)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            523..527
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          541..773
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cd00190"
                     /db_xref="CDD:238113"
     Site            541
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(581,632,726)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(720,746,748)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..775
                     /gene="TMPRSS6"
                     /coded_by="XM_054066243.1:851..3178"
                     /db_xref="GeneID:104065860"
ORIGIN      
        1 meaeeqeeda nsnslskdes etssrdylry vplgiaflll vgaaaatwyf ldyrpwhlep
       61 ailqfysgsl qvlnrqyspd lgrlesrafw lessklqnml keliratelg ryynsstvya
      121 fgegaltfff wfalqipesq qkemtaervn tmlhqelsts fnssgslsyq keyrvnpdsl
      181 vllgcyrysy vqeddvlrle gpdylasscl whlhglngym iklrlewtls dcrdrlamyd
      241 aagplekhli tsiygcsrqe pvvevlssgp vmsvvwkkam ysyydpfils aqavlvkace
      301 vnislqegle lqgkigtphy psyyspntqc twhmtvpsld ygvtlwfday slsrqkhdlp
      361 ctqgqwiiqn rrlcglrtlq ayaeripvts sadivinfts qisltgpgiq asyslynlsd
      421 pcpreflcsv nglcvpacdg ikdcpnglde rncvcpakfq chedstcief srvcnqqldc
      481 angsdeeqcs egvpcspfty lcedgtclkk pnplcdttad ckdlsdekhc dcglqaplsr
      541 ivggansveg ewpwqaslqv rgrhicggtl iadrwvvsaa hcfqderlas asiwtvylgk
      601 ylqnstshte vsfkvirlfl hpyyeedshd ydvallqldh pvlispliqp iclpppshif
      661 epglhcwitg wgalkegghi snvlqkvdvq liqhdvcsea yhymisprml cagyqqgkkd
      721 acqgdsggpl ackepsgrwf laglvswgmg carpdhygvy tritqvlgwm nqtms
//
LOCUS       XP_053922225             754 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protease serine 6 isoform X3 [Cuculus canorus].
ACCESSION   XP_053922225
VERSION     XP_053922225.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066250.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..754
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..754
                     /product="transmembrane protease serine 6 isoform X3"
                     /calculated_mol_wt=84314
     Region          64..160
                     /region_name="SEA"
                     /note="SEA domain; pfam01390"
                     /db_xref="CDD:460188"
     Region          223..291
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cl00049"
                     /db_xref="CDD:412131"
     Region          313..428
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cd00041"
                     /db_xref="CDD:238001"
     Site            order(326,328,330,358,363,395,424,426,428)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     Region          437..467
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(440,449,457..458)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(453,457,463..464)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            460..464
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          470..503
                     /region_name="Ldl_recept_a"
                     /note="Low-density lipoprotein receptor domain class A;
                     pfam00057"
                     /db_xref="CDD:395011"
     Site            order(473,482,493..494)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(486,489,493,499..500)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            496..500
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          509..544
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(514,522,534..535)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(527,530,534,540..541)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            537..541
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          555..752
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cd00190"
                     /db_xref="CDD:238113"
     Site            555
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(699,725,727)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..754
                     /gene="TMPRSS6"
                     /coded_by="XM_054066250.1:851..3115"
                     /db_xref="GeneID:104065860"
ORIGIN      
        1 meaeeqeeda nsnslskdes etssrdylry vplgiaflll vgaaaatwyf ldyrpwhlep
       61 ailqfysgsl qvlnrqyspd lgrlesrafw lessklqnml keliratelg ryynsstvya
      121 fgegaltfff wfalqipesq qkemtaervn tmlhqelsts fnssgslsyq keyrvnpdsl
      181 vllessvkdi vvlkstlgcy rysyvqeddv lrlegpdyla ssclwhlhgl ngymiklrle
      241 wtlsdcrdrl amydaagple khlitsiygc srqepvvevl ssgpvmsvvw kkamysyydp
      301 filsaqavlv kacevnislq eglelqgkig tphypsyysp ntqctwhmtv psldygvtlw
      361 fdayslsrqk hdlpctqgqw iiqnrrlcgl rtlqayaeri pvtssadivi nftsqisltg
      421 pgiqasysly nlsdpcpref lcsvnglcvp acdgikdcpn glderncvcp akfqchedst
      481 ciefsrvcnq qldcangsde eqcsegvpcs pftylcedgt clkkpnplcd ttadckdlsd
      541 ekhcdcglqa plsrivggan svegewpwqa slqvrgrhic ggtliadrwv vsaahcfqde
      601 rlasasiwtv ylgkylqnst shtevsfkpi clpppshife pglhcwitgw galkegghis
      661 nvlqkvdvql iqhdvcseay hymisprmlc agyqqgkkda cqgdsggpla ckepsgrwfl
      721 aglvswgmgc arpdhygvyt ritqvlgwmn qtms
//
LOCUS       XP_053922233             319 aa            linear   VRT 09-MAR-2023
DEFINITION  BTB/POZ domain-containing protein KCTD17 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053922233
VERSION     XP_053922233.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066258.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..319
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..319
                     /product="BTB/POZ domain-containing protein KCTD17 isoform
                     X1"
                     /calculated_mol_wt=35727
     Region          34..134
                     /region_name="BTB_POZ_KCTD17"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     channel tetramerization domain-containing protein 17
                     (KCTD17); cd18391"
                     /db_xref="CDD:349699"
     Site            order(34..35,39,41..42,44..48,51,70,72,80..84,86..87,93,
                     96..97,99,101..107,109..110,113..114)
                     /site_type="other"
                     /note="pentamer interface [polypeptide binding]"
                     /db_xref="CDD:349699"
     CDS             1..319
                     /gene="KCTD17"
                     /coded_by="XM_054066258.1:13..972"
                     /db_xref="GeneID:104065906"
ORIGIN      
        1 mrmrmrmegg eemqgavglr ctwgvpprag tqakwvrlnv ggtvflttrq tlcreqksfl
       61 crlcqgedlq sdrdetgayl idrdptyfgp ilnflrhgkl vldkdmaeeg vleeaefyni
      121 gpliriikdr leeknytvtq vppkhvyrvl qcqeeeltqm vstmsdgwrf eqlvnigssy
      181 nygnedqtef lcvvskelyn spsglsseps rkakhyhlhp tppctpassi lpsalfapqg
      241 sewslpgams lfaphfsssa avtsqrfedv iltfhsslli sdlhlyfyaa vhgtplpcsd
      301 tpqnssqaei lfhklpsea
//
LOCUS       XP_053922238             269 aa            linear   VRT 09-MAR-2023
DEFINITION  BTB/POZ domain-containing protein KCTD17 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053922238
VERSION     XP_053922238.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066263.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..269
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..269
                     /product="BTB/POZ domain-containing protein KCTD17 isoform
                     X2"
                     /calculated_mol_wt=30459
     Region          34..158
                     /region_name="BTB_POZ"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; cl38908"
                     /db_xref="CDD:453885"
     CDS             1..269
                     /gene="KCTD17"
                     /coded_by="XM_054066263.1:13..822"
                     /db_xref="GeneID:104065906"
ORIGIN      
        1 mrmrmrmegg eemqgavglr ctwgvpprag tqakwvrlnv ggtvflttrq tlcreqksfl
       61 crlcqgedlq sdrdetgayl idrdptyfgp ilnflrhgkl vldkdmaeeg wpktnsldds
      121 qlneglrrgl rvsgvleeae fynigpliri ikdrleekny tvtqvppkhv yrvlqcqeee
      181 ltqmvstmsd gwrfeqlvni gssynygned qteflcvvsk elynspsgls sepsrkakst
      241 eenleeeeqe veeeseaeae aeekgaasp
//
LOCUS       XP_053922245             269 aa            linear   VRT 09-MAR-2023
DEFINITION  BTB/POZ domain-containing protein KCTD17 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053922245
VERSION     XP_053922245.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066270.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..269
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..269
                     /product="BTB/POZ domain-containing protein KCTD17 isoform
                     X2"
                     /calculated_mol_wt=30459
     Region          34..158
                     /region_name="BTB_POZ"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; cl38908"
                     /db_xref="CDD:453885"
     CDS             1..269
                     /gene="KCTD17"
                     /coded_by="XM_054066270.1:13..822"
                     /db_xref="GeneID:104065906"
ORIGIN      
        1 mrmrmrmegg eemqgavglr ctwgvpprag tqakwvrlnv ggtvflttrq tlcreqksfl
       61 crlcqgedlq sdrdetgayl idrdptyfgp ilnflrhgkl vldkdmaeeg wpktnsldds
      121 qlneglrrgl rvsgvleeae fynigpliri ikdrleekny tvtqvppkhv yrvlqcqeee
      181 ltqmvstmsd gwrfeqlvni gssynygned qteflcvvsk elynspsgls sepsrkakst
      241 eenleeeeqe veeeseaeae aeekgaasp
//
LOCUS       XP_053922251             245 aa            linear   VRT 09-MAR-2023
DEFINITION  BTB/POZ domain-containing protein KCTD17 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053922251
VERSION     XP_053922251.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066276.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..245
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..245
                     /product="BTB/POZ domain-containing protein KCTD17 isoform
                     X3"
                     /calculated_mol_wt=27778
     Region          34..134
                     /region_name="BTB_POZ"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; cl38908"
                     /db_xref="CDD:453885"
     CDS             1..245
                     /gene="KCTD17"
                     /coded_by="XM_054066276.1:13..750"
                     /db_xref="GeneID:104065906"
ORIGIN      
        1 mrmrmrmegg eemqgavglr ctwgvpprag tqakwvrlnv ggtvflttrq tlcreqksfl
       61 crlcqgedlq sdrdetgayl idrdptyfgp ilnflrhgkl vldkdmaeeg vleeaefyni
      121 gpliriikdr leeknytvtq vppkhvyrvl qcqeeeltqm vstmsdgwrf eqlvnigssy
      181 nygnedqtef lcvvskelyn spsglsseps rkaksteenl eeeeqeveee seaeaeaeek
      241 gaasp
//
LOCUS       XP_053922260             223 aa            linear   VRT 09-MAR-2023
DEFINITION  BTB/POZ domain-containing protein KCTD17 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053922260
VERSION     XP_053922260.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066285.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..223
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..223
                     /product="BTB/POZ domain-containing protein KCTD17 isoform
                     X4"
                     /calculated_mol_wt=25398
     Region          34..134
                     /region_name="BTB_POZ_KCTD17"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     channel tetramerization domain-containing protein 17
                     (KCTD17); cd18391"
                     /db_xref="CDD:349699"
     Site            order(34..35,39,41..42,44..48,51,70,72,80..84,86..87,93,
                     96..97,99,101..107,109..110,113..114)
                     /site_type="other"
                     /note="pentamer interface [polypeptide binding]"
                     /db_xref="CDD:349699"
     CDS             1..223
                     /gene="KCTD17"
                     /coded_by="XM_054066285.1:12..683"
                     /db_xref="GeneID:104065906"
ORIGIN      
        1 mrmrmrmegg eemqgavglr ctwgvpprag tqakwvrlnv ggtvflttrq tlcreqksfl
       61 crlcqgedlq sdrdetgayl idrdptyfgp ilnflrhgkl vldkdmaeeg vleeaefyni
      121 gpliriikdr leeknytvtq vppkhvyrvl qcqeeeltqm vstmsdgwrf eqlvnigssy
      181 nygnedqtef lcvvskelyn spsglsseps rkakllqakg lrm
//
LOCUS       XP_053922269             297 aa            linear   VRT 09-MAR-2023
DEFINITION  3-mercaptopyruvate sulfurtransferase [Cuculus canorus].
ACCESSION   XP_053922269
VERSION     XP_053922269.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066294.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..297
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..297
                     /product="3-mercaptopyruvate sulfurtransferase"
                     /calculated_mol_wt=32909
     Region          29..279
                     /region_name="SseA"
                     /note="3-mercaptopyruvate sulfurtransferase SseA, contains
                     two rhodanese domains [Inorganic ion transport and
                     metabolism]; COG2897"
                     /db_xref="CDD:442142"
     CDS             1..297
                     /gene="MPST"
                     /coded_by="XM_054066294.1:136..1029"
                     /db_xref="GeneID:104065859"
ORIGIN      
        1 msqqllyral vsakwlseai ksqqaglalr ivdaswylpk mkrdpkrefe erhipgavff
       61 didqcsdrts pydhmlpkan dfaeyvgklg vgndshvvvy dgsdqglfsa prvwwmfraf
      121 gheavslldg glknwqregn alssgksqva ptefhasldk slvktyedvl dnmdshrfql
      181 vdaraagrfr giepeprdgi epghvpgsmn ipftdfltes glektpeqir slfqekkvdl
      241 skpvvatcgs gvtachvalg aylcgkpdva vydgawvewy mraqpeniis egkgktv
//
LOCUS       XP_009566731             294 aa            linear   VRT 09-MAR-2023
DEFINITION  thiosulfate sulfurtransferase [Cuculus canorus].
ACCESSION   XP_009566731
VERSION     XP_009566731.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568436.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566731.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..294
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..294
                     /product="thiosulfate sulfurtransferase"
                     /calculated_mol_wt=32877
     Region          27..276
                     /region_name="SseA"
                     /note="3-mercaptopyruvate sulfurtransferase SseA, contains
                     two rhodanese domains [Inorganic ion transport and
                     metabolism]; COG2897"
                     /db_xref="CDD:442142"
     CDS             1..294
                     /gene="TST"
                     /coded_by="XM_009568436.2:79..963"
                     /db_xref="GeneID:104065904"
ORIGIN      
        1 mspqvlgral vtakwlseav ragrvgpslr ildaswyppq ernarqefre shipgasffd
       61 ieecrdkasp ydfmlpseth fadyvgslgv gndthvvvyd gdklgsfyap rawwmfrvfg
      121 hkevsvlngg fknwvkeghp vtaevsqptp atfkaklnpi lvktfeemmq nvgslrfqvv
      181 dsrpegrfrg teldqglesg hipgsvnipf ssllteaghe ksieeiqeif rekkvdlskp
      241 ltatcrkgvt achialaayl cgkrdvavyd gswsewfhra parykvsemk rnka
//
LOCUS       XP_053922294             352 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-1,4-galactosyltransferase 4 [Cuculus canorus].
ACCESSION   XP_053922294
VERSION     XP_053922294.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066319.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..352
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..352
                     /product="beta-1,4-galactosyltransferase 4"
                     /calculated_mol_wt=41009
     Region          127..344
                     /region_name="b4GalT"
                     /note="Beta-4-Galactosyltransferase is involved in the
                     formation of the poly-N-acetyllactosamine core structures
                     present in glycoproteins and glycosphingolipids; cd00899"
                     /db_xref="CDD:132999"
     Site            order(134,136,138,173,199..201)
                     /site_type="active"
                     /note="ligand binding site [active]"
                     /db_xref="CDD:132999"
     Site            order(199,201,294)
                     /site_type="active"
                     /note="metal binding site [active]"
                     /db_xref="CDD:132999"
     CDS             1..352
                     /gene="B4GALT4"
                     /coded_by="XM_054066319.1:355..1413"
                     /db_xref="GeneID:104055805"
ORIGIN      
        1 masslyvfhl fykfkmvvlv ilclmvlwat fsyfvdtrqe iskalivvkd frkvasleds
       61 qkeenfestv eiptvksfqd pcpslspylr ganklsfkas ltleeveken phvakgryrp
      121 aecsalqrva iliphryrek hllyllehlh pflqrqqldy giyvihqagn tkfnraklln
      181 vgylealkee nwdcfifhdv dlvpendfnl ymcdrqpkhl vvgrnstgyr lryrgyfggv
      241 taltrdqfsk vngfsnkywg wggedddlri rvemqkmrvv rpsatvgryt mifhnrdhgn
      301 eenrgrmkll hevsktwktd glnscsykll svehnplyin itvdfsmqpk is
//
LOCUS       XP_053922300             352 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-1,4-galactosyltransferase 4 [Cuculus canorus].
ACCESSION   XP_053922300
VERSION     XP_053922300.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066325.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..352
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..352
                     /product="beta-1,4-galactosyltransferase 4"
                     /calculated_mol_wt=41009
     Region          127..344
                     /region_name="b4GalT"
                     /note="Beta-4-Galactosyltransferase is involved in the
                     formation of the poly-N-acetyllactosamine core structures
                     present in glycoproteins and glycosphingolipids; cd00899"
                     /db_xref="CDD:132999"
     Site            order(134,136,138,173,199..201)
                     /site_type="active"
                     /note="ligand binding site [active]"
                     /db_xref="CDD:132999"
     Site            order(199,201,294)
                     /site_type="active"
                     /note="metal binding site [active]"
                     /db_xref="CDD:132999"
     CDS             1..352
                     /gene="B4GALT4"
                     /coded_by="XM_054066325.1:345..1403"
                     /db_xref="GeneID:104055805"
ORIGIN      
        1 masslyvfhl fykfkmvvlv ilclmvlwat fsyfvdtrqe iskalivvkd frkvasleds
       61 qkeenfestv eiptvksfqd pcpslspylr ganklsfkas ltleeveken phvakgryrp
      121 aecsalqrva iliphryrek hllyllehlh pflqrqqldy giyvihqagn tkfnraklln
      181 vgylealkee nwdcfifhdv dlvpendfnl ymcdrqpkhl vvgrnstgyr lryrgyfggv
      241 taltrdqfsk vngfsnkywg wggedddlri rvemqkmrvv rpsatvgryt mifhnrdhgn
      301 eenrgrmkll hevsktwktd glnscsykll svehnplyin itvdfsmqpk is
//
LOCUS       XP_053922306             352 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-1,4-galactosyltransferase 4 [Cuculus canorus].
ACCESSION   XP_053922306
VERSION     XP_053922306.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066331.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..352
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..352
                     /product="beta-1,4-galactosyltransferase 4"
                     /calculated_mol_wt=41009
     Region          127..344
                     /region_name="b4GalT"
                     /note="Beta-4-Galactosyltransferase is involved in the
                     formation of the poly-N-acetyllactosamine core structures
                     present in glycoproteins and glycosphingolipids; cd00899"
                     /db_xref="CDD:132999"
     Site            order(134,136,138,173,199..201)
                     /site_type="active"
                     /note="ligand binding site [active]"
                     /db_xref="CDD:132999"
     Site            order(199,201,294)
                     /site_type="active"
                     /note="metal binding site [active]"
                     /db_xref="CDD:132999"
     CDS             1..352
                     /gene="B4GALT4"
                     /coded_by="XM_054066331.1:363..1421"
                     /db_xref="GeneID:104055805"
ORIGIN      
        1 masslyvfhl fykfkmvvlv ilclmvlwat fsyfvdtrqe iskalivvkd frkvasleds
       61 qkeenfestv eiptvksfqd pcpslspylr ganklsfkas ltleeveken phvakgryrp
      121 aecsalqrva iliphryrek hllyllehlh pflqrqqldy giyvihqagn tkfnraklln
      181 vgylealkee nwdcfifhdv dlvpendfnl ymcdrqpkhl vvgrnstgyr lryrgyfggv
      241 taltrdqfsk vngfsnkywg wggedddlri rvemqkmrvv rpsatvgryt mifhnrdhgn
      301 eenrgrmkll hevsktwktd glnscsykll svehnplyin itvdfsmqpk is
//
LOCUS       XP_053922312             352 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-1,4-galactosyltransferase 4 [Cuculus canorus].
ACCESSION   XP_053922312
VERSION     XP_053922312.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066337.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..352
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..352
                     /product="beta-1,4-galactosyltransferase 4"
                     /calculated_mol_wt=41009
     Region          127..344
                     /region_name="b4GalT"
                     /note="Beta-4-Galactosyltransferase is involved in the
                     formation of the poly-N-acetyllactosamine core structures
                     present in glycoproteins and glycosphingolipids; cd00899"
                     /db_xref="CDD:132999"
     Site            order(134,136,138,173,199..201)
                     /site_type="active"
                     /note="ligand binding site [active]"
                     /db_xref="CDD:132999"
     Site            order(199,201,294)
                     /site_type="active"
                     /note="metal binding site [active]"
                     /db_xref="CDD:132999"
     CDS             1..352
                     /gene="B4GALT4"
                     /coded_by="XM_054066337.1:680..1738"
                     /db_xref="GeneID:104055805"
ORIGIN      
        1 masslyvfhl fykfkmvvlv ilclmvlwat fsyfvdtrqe iskalivvkd frkvasleds
       61 qkeenfestv eiptvksfqd pcpslspylr ganklsfkas ltleeveken phvakgryrp
      121 aecsalqrva iliphryrek hllyllehlh pflqrqqldy giyvihqagn tkfnraklln
      181 vgylealkee nwdcfifhdv dlvpendfnl ymcdrqpkhl vvgrnstgyr lryrgyfggv
      241 taltrdqfsk vngfsnkywg wggedddlri rvemqkmrvv rpsatvgryt mifhnrdhgn
      301 eenrgrmkll hevsktwktd glnscsykll svehnplyin itvdfsmqpk is
//
LOCUS       XP_053922319             344 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-1,4-galactosyltransferase 3 [Cuculus canorus].
ACCESSION   XP_053922319
VERSION     XP_053922319.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066344.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..344
                     /product="beta-1,4-galactosyltransferase 3"
                     /calculated_mol_wt=39787
     Region          117..336
                     /region_name="b4GalT"
                     /note="Beta-4-Galactosyltransferase is involved in the
                     formation of the poly-N-acetyllactosamine core structures
                     present in glycoproteins and glycosphingolipids; cd00899"
                     /db_xref="CDD:132999"
     Site            order(125,127,129,164,190..192)
                     /site_type="active"
                     /note="ligand binding site [active]"
                     /db_xref="CDD:132999"
     Site            order(190,192,286)
                     /site_type="active"
                     /note="metal binding site [active]"
                     /db_xref="CDD:132999"
     CDS             1..344
                     /gene="LOC104055804"
                     /coded_by="XM_054066344.1:359..1393"
                     /db_xref="GeneID:104055804"
ORIGIN      
        1 mslsrvdnpg fllflfvfqa ifililyqgg pssvfhgfsd shqvldyskt hdvytnlslf
       61 tpapnneamp ycsvqspifv gpltitfrvl pserkiikkn pfvqpggryr pphclaryks
      121 ailvayrnqe kylrhllyyi hpflqrqqls ysiyliqqvg ngtfnrakll nvgvrealkd
      181 edwdclllhd vdlvpendyn lyvcdeyypk hmasamdkfq ytlpyksffg gvsaltpehy
      241 mkingfpnty wgssgenddi atriqlagmk ivrtspqlgr ykvmdynekt etqepwrrpt
      301 srhntrktwk ddgmnslefk llsrkkhply tnitvdigyv ppfs
//
LOCUS       XP_053922322             523 aa            linear   VRT 09-MAR-2023
DEFINITION  cyclic AMP-responsive element-binding protein 3-like protein 2
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053922322
VERSION     XP_053922322.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066347.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..523
                     /product="cyclic AMP-responsive element-binding protein
                     3-like protein 2 isoform X1"
                     /calculated_mol_wt=57489
     Region          305..349
                     /region_name="bZIP_CREB3"
                     /note="Basic leucine zipper (bZIP) domain of Cyclic
                     AMP-responsive element-binding protein 3 (CREB3) and
                     similar proteins: a DNA-binding and dimerization domain;
                     cd14689"
                     /db_xref="CDD:269837"
     Region          305..348
                     /region_name="coiled coil"
                     /note="coiled coil [structural motif]"
                     /db_xref="CDD:269837"
     Site            order(315,318..319,322..323,325..326,329..330,332..333,
                     336..337,339..340,343..344,346..347)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:269837"
     CDS             1..523
                     /gene="CREB3L2"
                     /coded_by="XM_054066347.1:180..1751"
                     /db_xref="GeneID:104058972"
ORIGIN      
        1 meacesggeq ppppllhwdr klselcepad pdtllchthf tefldefspd vlgqllndpf
       61 lseknetmev elspaspapl iqaehsyslc gdsrpqsplt histddnfne gdleneewcl
      121 gteltpaaik tepalcetsg lapsvsltvt atslegepse lqtdalmkpl sqkvlpeikl
      181 ephevdqfln lsskevvdpl hlpptppssh gsdseggqsp arslppsspi qlqataktts
      241 rtasalsnsp lltaphklqg tgplilteee krtliaegyp iptklpltka eekvlkkirr
      301 kiknkisaqe srrkkkeymd slekkvetcs nensklrkkv evlentnrtl lqqlqrlqam
      361 vagkvsrsck aastqtgtcl mmvvlcfavv fgsfsqsygp ypsatkmvlp rqhsspesyt
      421 dsivrsrsll iyeephqlee ssspisfadr sdrqadtsky aalsleampg tqqddimqft
      481 ianetrleks vllglqqhrv nselegnetl kiieidrrvn ats
//
LOCUS       XP_053922331             522 aa            linear   VRT 09-MAR-2023
DEFINITION  cyclic AMP-responsive element-binding protein 3-like protein 2
            isoform X2 [Cuculus canorus].
ACCESSION   XP_053922331
VERSION     XP_053922331.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066356.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..522
                     /product="cyclic AMP-responsive element-binding protein
                     3-like protein 2 isoform X2"
                     /calculated_mol_wt=57390
     Region          304..348
                     /region_name="bZIP_CREB3"
                     /note="Basic leucine zipper (bZIP) domain of Cyclic
                     AMP-responsive element-binding protein 3 (CREB3) and
                     similar proteins: a DNA-binding and dimerization domain;
                     cd14689"
                     /db_xref="CDD:269837"
     Region          304..347
                     /region_name="coiled coil"
                     /note="coiled coil [structural motif]"
                     /db_xref="CDD:269837"
     Site            order(314,317..318,321..322,324..325,328..329,331..332,
                     335..336,338..339,342..343,345..346)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:269837"
     CDS             1..522
                     /gene="CREB3L2"
                     /coded_by="XM_054066356.1:180..1748"
                     /db_xref="GeneID:104058972"
ORIGIN      
        1 meacesggeq ppppllhwdr klselcepad pdtllchthf tefldefspd vlgqllndpf
       61 lseknetmev elspaspapl iqaehsyslc gdsrpqsplt histddnfne gdleneewcl
      121 gteltpaaik tepalcetsg lapsvsltvt atslegepse lqtdalmkpl sqkvlpeikl
      181 ephevdqfln lsskevdplh lpptppsshg sdseggqspa rslppsspiq lqatakttsr
      241 tasalsnspl ltaphklqgt gplilteeek rtliaegypi ptklpltkae ekvlkkirrk
      301 iknkisaqes rrkkkeymds lekkvetcsn ensklrkkve vlentnrtll qqlqrlqamv
      361 agkvsrscka astqtgtclm mvvlcfavvf gsfsqsygpy psatkmvlpr qhsspesytd
      421 sivrsrslli yeephqlees sspisfadrs drqadtskya alsleampgt qqddimqfti
      481 anetrleksv llglqqhrvn selegnetlk iieidrrvna ts
//
LOCUS       XP_053922339             506 aa            linear   VRT 09-MAR-2023
DEFINITION  cyclic AMP-responsive element-binding protein 3-like protein 2
            isoform X3 [Cuculus canorus].
ACCESSION   XP_053922339
VERSION     XP_053922339.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066364.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..506
                     /product="cyclic AMP-responsive element-binding protein
                     3-like protein 2 isoform X3"
                     /calculated_mol_wt=55558
     Region          305..349
                     /region_name="bZIP_CREB3"
                     /note="Basic leucine zipper (bZIP) domain of Cyclic
                     AMP-responsive element-binding protein 3 (CREB3) and
                     similar proteins: a DNA-binding and dimerization domain;
                     cd14689"
                     /db_xref="CDD:269837"
     Region          305..348
                     /region_name="coiled coil"
                     /note="coiled coil [structural motif]"
                     /db_xref="CDD:269837"
     Site            order(315,318..319,322..323,325..326,329..330,332..333,
                     336..337,339..340,343..344,346..347)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:269837"
     CDS             1..506
                     /gene="CREB3L2"
                     /coded_by="XM_054066364.1:180..1700"
                     /db_xref="GeneID:104058972"
ORIGIN      
        1 meacesggeq ppppllhwdr klselcepad pdtllchthf tefldefspd vlgqllndpf
       61 lseknetmev elspaspapl iqaehsyslc gdsrpqsplt histddnfne gdleneewcl
      121 gteltpaaik tepalcetsg lapsvsltvt atslegepse lqtdalmkpl sqkvlpeikl
      181 ephevdqfln lsskevvdpl hlpptppssh gsdseggqsp arslppsspi qlqataktts
      241 rtasalsnsp lltaphklqg tgplilteee krtliaegyp iptklpltka eekvlkkirr
      301 kiknkisaqe srrkkkeymd slekkvetcs nensklrkkv evlentnrtl lqqlqrlqam
      361 vagkvsrsck aastqtgtcl mmvvlcfavv fgsfsqsygp ypsatkmvlp rqhsspesyt
      421 dsivrsrsll iyeephqlee ssspisfadr sdrqadtsky aalsleampg tqqddimqft
      481 ianetrleks vllglqqhra pmvchl
//
LOCUS       XP_053922348            1664 aa            linear   VRT 09-MAR-2023
DEFINITION  kinesin-like protein KIF21A isoform X1 [Cuculus canorus].
ACCESSION   XP_053922348
VERSION     XP_053922348.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066373.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1664
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1664
                     /product="kinesin-like protein KIF21A isoform X1"
                     /calculated_mol_wt=186215
     Region          8..372
                     /region_name="KISc_KIF4"
                     /note="Kinesin motor domain, KIF4-like subfamily; cd01372"
                     /db_xref="CDD:276823"
     Site            order(17,88,91,93..96,274)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:276823"
     Site            order(324,327,330)
                     /site_type="other"
                     /note="microtubule interaction site [polypeptide binding]"
                     /db_xref="CDD:276823"
     Region          <389..1037
                     /region_name="SCP-1"
                     /note="Synaptonemal complex protein 1 (SCP-1); pfam05483"
                     /db_xref="CDD:114219"
     Region          638..>849
                     /region_name="EnvC"
                     /note="Septal ring factor EnvC, activator of murein
                     hydrolases AmiA and AmiB [Cell cycle control, cell
                     division, chromosome partitioning]; COG4942"
                     /db_xref="CDD:443969"
     Region          933..1016
                     /region_name="Rcc_KIF21A"
                     /note="regulatory coiled-coil domain found in kinesin-like
                     protein KIF21A; cd22263"
                     /db_xref="CDD:410204"
     Site            order(936..937,940..941,943..944,947..948,950..951,
                     954..955,957..958,961..962,964..965,968..969,972,977..978,
                     984..985,987..988,991..992,994..995,998..999,1001..1002,
                     1005..1006,1008..1009,1012..1013)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:410204"
     Region          1323..1636
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cd00200"
                     /db_xref="CDD:238121"
     Site            order(1330,1346,1350,1356..1357,1369..1370,1388,
                     1397..1398,1411..1412,1451,1461..1462,1475,1495,1500,
                     1506..1507,1525..1526,1542,1546,1552..1553,1566..1567,
                     1584,1589,1595..1596,1608..1609,1625,1629,1635..1636)
                     /site_type="active"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     Region          1335..1369
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1374..1411
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1439..1474
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1479..1523
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1531..1564
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1571..1607
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..1664
                     /gene="KIF21A"
                     /coded_by="XM_054066373.1:151..5145"
                     /db_xref="GeneID:104056081"
ORIGIN      
        1 msagqdessv rvavrirpql akekiegchi ctsvtpgepq vflgkdkaft fdyvfnidsq
       61 qeeiyrqcie kliegcfegy natvfaygqt gagktytmgt gfdvniteee qgiisravkh
      121 lfrcieekkq aaikqghppp dfkvnaqfle lyneeildlf dttrdidakn kksnikihed
      181 saggiytvgv ttrsvngese mmqclklgal srttastqmn vqssrshaif tihlcqtrvc
      241 pafntdnttd nriisessem nefetltakf hfvdlagser lkrtgatger akegisincg
      301 llalgnvisa lgdkskkath vpyrdskltr llqdslggns qtlmiacvsp sdrdfmetln
      361 tlkyanrarn iknkvmvnqd rasqqinalr seitrlqmel meyktgkrii deegvesind
      421 mfhenamlqt ennnlrvrik amqetvdalr aritqlmsdq anqvlarage gneeisnmih
      481 nyikeiedlr aklleseavn enlrrnlsra strsayfggp safsasmlss eketmeildi
      541 akkdleklkk kerkkkkrlq kleessqeer svkedntdne qekrdekgts erenneleae
      601 eiqevsdhed eddedddddd dmevvessde sdsdsdeken yqadlanitc eiaikqklid
      661 elensqrrlq tlkkqyeekl mvlqhkirdt qlerdqvlqn lgsvetysee kakkikseye
      721 kklqamnkel qrlqtaqkeh arllknqsqy ekqlkklqqe vtemkktkvr lmkqmkeeqe
      781 karmtesrrn reiaqlkkeq rkrehqlkll eaqkrnqevi lrrkteevta lrrqvrplsd
      841 kvagkvsrkl slpehaiqea sssssvehds srtvvqqkmr ipvarvqals vtatngtgkk
      901 yqrkavtsrv ysskaarmkw qllerrvtdi imqrmtisnm eadmnrlltq reeltkrrek
      961 lskkreklik dgggseaern vqnineemes ltanidyind sisdcqanim qmeeakeege
     1021 tldvtavina ctltearyll dhfltmgink glqaaqkeaq ikvlegrlkq teitsatqnq
     1081 llfhmlkeka elnpeldall ghalqdldsi sqenledstd edvplhspgt egsslssdll
     1141 klcgevkpks karrrtttqm ellyadssdl vsdisaadst lagalasvae tqesamaadt
     1201 ndttardref ipppsglpsk igsisrqpsl sekkitepsp ltkrkayekt mektkakeqk
     1261 lsdsgapeas lspptsppsr prnemnvfsr ltvsqgntsv qqdkgiinpf paskcikssp
     1321 lqciytaegh tkavlcvdat ddllftgskd rtckvwnlvt gqeimslggh pnnvvsvkyc
     1381 nytslvftvs tsyikvwdir dsakcirtlt ssgqampgdv csgstnrtva ipagenqinq
     1441 ialnptgtfl yaaagnsvrm wdlkrfqstg kltghqgpvm cltvdrisng qdlivtgskd
     1501 hyikmfdvte galgsvspth nfepphydgi ealaimgdnl fsgsrdngik kwdlaqkdll
     1561 qqvpnahkdw vcalglvpga pvllsgcrgg tlrlwnvdtf apigemkghd spinaictns
     1621 sqiftaaddr tvriwkarni idgqisdtgd gsedlasiem mgnk
//
LOCUS       XP_053922358            1657 aa            linear   VRT 09-MAR-2023
DEFINITION  kinesin-like protein KIF21A isoform X2 [Cuculus canorus].
ACCESSION   XP_053922358
VERSION     XP_053922358.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066383.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1657
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1657
                     /product="kinesin-like protein KIF21A isoform X2"
                     /calculated_mol_wt=185456
     Region          8..372
                     /region_name="KISc_KIF4"
                     /note="Kinesin motor domain, KIF4-like subfamily; cd01372"
                     /db_xref="CDD:276823"
     Site            order(17,88,91,93..96,274)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:276823"
     Site            order(324,327,330)
                     /site_type="other"
                     /note="microtubule interaction site [polypeptide binding]"
                     /db_xref="CDD:276823"
     Region          <389..1037
                     /region_name="SCP-1"
                     /note="Synaptonemal complex protein 1 (SCP-1); pfam05483"
                     /db_xref="CDD:114219"
     Region          638..>849
                     /region_name="EnvC"
                     /note="Septal ring factor EnvC, activator of murein
                     hydrolases AmiA and AmiB [Cell cycle control, cell
                     division, chromosome partitioning]; COG4942"
                     /db_xref="CDD:443969"
     Region          933..1016
                     /region_name="Rcc_KIF21A"
                     /note="regulatory coiled-coil domain found in kinesin-like
                     protein KIF21A; cd22263"
                     /db_xref="CDD:410204"
     Site            order(936..937,940..941,943..944,947..948,950..951,
                     954..955,957..958,961..962,964..965,968..969,972,977..978,
                     984..985,987..988,991..992,994..995,998..999,1001..1002,
                     1005..1006,1008..1009,1012..1013)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:410204"
     Region          1316..1629
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cd00200"
                     /db_xref="CDD:238121"
     Site            order(1323,1339,1343,1349..1350,1362..1363,1381,
                     1390..1391,1404..1405,1444,1454..1455,1468,1488,1493,
                     1499..1500,1518..1519,1535,1539,1545..1546,1559..1560,
                     1577,1582,1588..1589,1601..1602,1618,1622,1628..1629)
                     /site_type="active"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     Region          1328..1362
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1367..1404
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1432..1467
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1472..1516
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1524..1557
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1564..1600
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..1657
                     /gene="KIF21A"
                     /coded_by="XM_054066383.1:151..5124"
                     /db_xref="GeneID:104056081"
ORIGIN      
        1 msagqdessv rvavrirpql akekiegchi ctsvtpgepq vflgkdkaft fdyvfnidsq
       61 qeeiyrqcie kliegcfegy natvfaygqt gagktytmgt gfdvniteee qgiisravkh
      121 lfrcieekkq aaikqghppp dfkvnaqfle lyneeildlf dttrdidakn kksnikihed
      181 saggiytvgv ttrsvngese mmqclklgal srttastqmn vqssrshaif tihlcqtrvc
      241 pafntdnttd nriisessem nefetltakf hfvdlagser lkrtgatger akegisincg
      301 llalgnvisa lgdkskkath vpyrdskltr llqdslggns qtlmiacvsp sdrdfmetln
      361 tlkyanrarn iknkvmvnqd rasqqinalr seitrlqmel meyktgkrii deegvesind
      421 mfhenamlqt ennnlrvrik amqetvdalr aritqlmsdq anqvlarage gneeisnmih
      481 nyikeiedlr aklleseavn enlrrnlsra strsayfggp safsasmlss eketmeildi
      541 akkdleklkk kerkkkkrlq kleessqeer svkedntdne qekrdekgts erenneleae
      601 eiqevsdhed eddedddddd dmevvessde sdsdsdeken yqadlanitc eiaikqklid
      661 elensqrrlq tlkkqyeekl mvlqhkirdt qlerdqvlqn lgsvetysee kakkikseye
      721 kklqamnkel qrlqtaqkeh arllknqsqy ekqlkklqqe vtemkktkvr lmkqmkeeqe
      781 karmtesrrn reiaqlkkeq rkrehqlkll eaqkrnqevi lrrkteevta lrrqvrplsd
      841 kvagkvsrkl slpehaiqea sssssvehds srtvvqqkmr ipvarvqals vtatngtgkk
      901 yqrkavtsrv ysskaarmkw qllerrvtdi imqrmtisnm eadmnrlltq reeltkrrek
      961 lskkreklik dgggseaern vqnineemes ltanidyind sisdcqanim qmeeakeege
     1021 tldvtavina ctltearyll dhfltmgink glqaaqkeaq ikvlegrlkq teitsatqnq
     1081 llfhmlkeka elnpeldall ghalqenled stdedvplhs pgtegsslss dllklcgevk
     1141 pkskarrrtt tqmellyads sdlvsdisaa dstlagalas vaetqesama adtndttard
     1201 refipppsgl pskigsisrq pslsekkite pspltkrkay ektmektkak eqklsdsgap
     1261 easlspptsp psrprnemnv fsrltvsqgn tsvqqdkgii npfpaskcik ssplqciyta
     1321 eghtkavlcv datddllftg skdrtckvwn lvtgqeimsl gghpnnvvsv kycnytslvf
     1381 tvstsyikvw dirdsakcir tltssgqamp gdvcsgstnr tvaipagenq inqialnptg
     1441 tflyaaagns vrmwdlkrfq stgkltghqg pvmcltvdri sngqdlivtg skdhyikmfd
     1501 vtegalgsvs pthnfepphy dgiealaimg dnlfsgsrdn gikkwdlaqk dllqqvpnah
     1561 kdwvcalglv pgapvllsgc rggtlrlwnv dtfapigemk ghdspinaic tnssqiftaa
     1621 ddrtvriwka rniidgqisd tgdgsedlas iemmgnk
//
LOCUS       XP_053922369            1651 aa            linear   VRT 09-MAR-2023
DEFINITION  kinesin-like protein KIF21A isoform X3 [Cuculus canorus].
ACCESSION   XP_053922369
VERSION     XP_053922369.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066394.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1651
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1651
                     /product="kinesin-like protein KIF21A isoform X3"
                     /calculated_mol_wt=184601
     Region          8..372
                     /region_name="KISc_KIF4"
                     /note="Kinesin motor domain, KIF4-like subfamily; cd01372"
                     /db_xref="CDD:276823"
     Site            order(17,88,91,93..96,274)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:276823"
     Site            order(324,327,330)
                     /site_type="other"
                     /note="microtubule interaction site [polypeptide binding]"
                     /db_xref="CDD:276823"
     Region          <389..1024
                     /region_name="SCP-1"
                     /note="Synaptonemal complex protein 1 (SCP-1); pfam05483"
                     /db_xref="CDD:114219"
     Region          625..>836
                     /region_name="EnvC"
                     /note="Septal ring factor EnvC, activator of murein
                     hydrolases AmiA and AmiB [Cell cycle control, cell
                     division, chromosome partitioning]; COG4942"
                     /db_xref="CDD:443969"
     Region          920..1003
                     /region_name="Rcc_KIF21A"
                     /note="regulatory coiled-coil domain found in kinesin-like
                     protein KIF21A; cd22263"
                     /db_xref="CDD:410204"
     Site            order(923..924,927..928,930..931,934..935,937..938,
                     941..942,944..945,948..949,951..952,955..956,959,964..965,
                     971..972,974..975,978..979,981..982,985..986,988..989,
                     992..993,995..996,999..1000)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:410204"
     Region          1310..1623
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cd00200"
                     /db_xref="CDD:238121"
     Site            order(1317,1333,1337,1343..1344,1356..1357,1375,
                     1384..1385,1398..1399,1438,1448..1449,1462,1482,1487,
                     1493..1494,1512..1513,1529,1533,1539..1540,1553..1554,
                     1571,1576,1582..1583,1595..1596,1612,1616,1622..1623)
                     /site_type="active"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     Region          1322..1356
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1361..1398
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1426..1461
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1466..1510
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1518..1551
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1558..1594
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..1651
                     /gene="KIF21A"
                     /coded_by="XM_054066394.1:151..5106"
                     /db_xref="GeneID:104056081"
ORIGIN      
        1 msagqdessv rvavrirpql akekiegchi ctsvtpgepq vflgkdkaft fdyvfnidsq
       61 qeeiyrqcie kliegcfegy natvfaygqt gagktytmgt gfdvniteee qgiisravkh
      121 lfrcieekkq aaikqghppp dfkvnaqfle lyneeildlf dttrdidakn kksnikihed
      181 saggiytvgv ttrsvngese mmqclklgal srttastqmn vqssrshaif tihlcqtrvc
      241 pafntdnttd nriisessem nefetltakf hfvdlagser lkrtgatger akegisincg
      301 llalgnvisa lgdkskkath vpyrdskltr llqdslggns qtlmiacvsp sdrdfmetln
      361 tlkyanrarn iknkvmvnqd rasqqinalr seitrlqmel meyktgkrii deegvesind
      421 mfhenamlqt ennnlrvrik amqetvdalr aritqlmsdq anqvlarage gneeisnmih
      481 nyikeiedlr aklleseavn enlrrnlsra strsayfggp safsasmlss eketmeildi
      541 akkdleklkk kerkkkksvk edntdneqek rdekgtsere nneleaeeiq evsdhededd
      601 edddddddme vvessdesds dsdekenyqa dlanitceia ikqklidele nsqrrlqtlk
      661 kqyeeklmvl qhkirdtqle rdqvlqnlgs vetyseekak kikseyekkl qamnkelqrl
      721 qtaqkeharl lknqsqyekq lkklqqevte mkktkvrlmk qmkeeqekar mtesrrnrei
      781 aqlkkeqrkr ehqlklleaq krnqevilrr kteevtalrr qvrplsdkva gkvsrklslp
      841 ehaiqeasss ssvehdssrt vvqqkmripv arvqalsvta tngtgkkyqr kavtsrvyss
      901 kaarmkwqll errvtdiimq rmtisnmead mnrlltqree ltkrreklsk kreklikdgg
      961 gseaernvqn ineemeslta nidyindsis dcqanimqme eakeegetld vtavinactl
     1021 tearylldhf ltmginkglq aaqkeaqikv legrlkqtei tsatqnqllf hmlkekaeln
     1081 peldallgha lqdldsisqe nledstdedv plhspgtegs slssdllklc gevkpkskar
     1141 rrtttqmell yadssdlvsd isaadstlag alasvaetqe samaadtndt tardrefipp
     1201 psglpskigs isrqpslsek kitepspltk rkayektmek tkakeqklsd sgapeaslsp
     1261 ptsppsrprn emnvfsrltv sqgntsvqqd kgiinpfpas kcikssplqc iytaeghtka
     1321 vlcvdatddl lftgskdrtc kvwnlvtgqe imslgghpnn vvsvkycnyt slvftvstsy
     1381 ikvwdirdsa kcirtltssg qampgdvcsg stnrtvaipa genqinqial nptgtflyaa
     1441 agnsvrmwdl krfqstgklt ghqgpvmclt vdrisngqdl ivtgskdhyi kmfdvtegal
     1501 gsvspthnfe pphydgieal aimgdnlfsg srdngikkwd laqkdllqqv pnahkdwvca
     1561 lglvpgapvl lsgcrggtlr lwnvdtfapi gemkghdspi naictnssqi ftaaddrtvr
     1621 iwkarniidg qisdtgdgse dlasiemmgn k
//
LOCUS       XP_053922379            1644 aa            linear   VRT 09-MAR-2023
DEFINITION  kinesin-like protein KIF21A isoform X4 [Cuculus canorus].
ACCESSION   XP_053922379
VERSION     XP_053922379.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066404.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1644
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1644
                     /product="kinesin-like protein KIF21A isoform X4"
                     /calculated_mol_wt=183842
     Region          8..372
                     /region_name="KISc_KIF4"
                     /note="Kinesin motor domain, KIF4-like subfamily; cd01372"
                     /db_xref="CDD:276823"
     Site            order(17,88,91,93..96,274)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:276823"
     Site            order(324,327,330)
                     /site_type="other"
                     /note="microtubule interaction site [polypeptide binding]"
                     /db_xref="CDD:276823"
     Region          <389..1024
                     /region_name="SCP-1"
                     /note="Synaptonemal complex protein 1 (SCP-1); pfam05483"
                     /db_xref="CDD:114219"
     Region          625..>836
                     /region_name="EnvC"
                     /note="Septal ring factor EnvC, activator of murein
                     hydrolases AmiA and AmiB [Cell cycle control, cell
                     division, chromosome partitioning]; COG4942"
                     /db_xref="CDD:443969"
     Region          920..1003
                     /region_name="Rcc_KIF21A"
                     /note="regulatory coiled-coil domain found in kinesin-like
                     protein KIF21A; cd22263"
                     /db_xref="CDD:410204"
     Site            order(923..924,927..928,930..931,934..935,937..938,
                     941..942,944..945,948..949,951..952,955..956,959,964..965,
                     971..972,974..975,978..979,981..982,985..986,988..989,
                     992..993,995..996,999..1000)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:410204"
     Region          1303..1616
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cd00200"
                     /db_xref="CDD:238121"
     Site            order(1310,1326,1330,1336..1337,1349..1350,1368,
                     1377..1378,1391..1392,1431,1441..1442,1455,1475,1480,
                     1486..1487,1505..1506,1522,1526,1532..1533,1546..1547,
                     1564,1569,1575..1576,1588..1589,1605,1609,1615..1616)
                     /site_type="active"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     Region          1315..1349
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1354..1391
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1419..1454
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1459..1503
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1511..1544
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1551..1587
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..1644
                     /gene="KIF21A"
                     /coded_by="XM_054066404.1:151..5085"
                     /db_xref="GeneID:104056081"
ORIGIN      
        1 msagqdessv rvavrirpql akekiegchi ctsvtpgepq vflgkdkaft fdyvfnidsq
       61 qeeiyrqcie kliegcfegy natvfaygqt gagktytmgt gfdvniteee qgiisravkh
      121 lfrcieekkq aaikqghppp dfkvnaqfle lyneeildlf dttrdidakn kksnikihed
      181 saggiytvgv ttrsvngese mmqclklgal srttastqmn vqssrshaif tihlcqtrvc
      241 pafntdnttd nriisessem nefetltakf hfvdlagser lkrtgatger akegisincg
      301 llalgnvisa lgdkskkath vpyrdskltr llqdslggns qtlmiacvsp sdrdfmetln
      361 tlkyanrarn iknkvmvnqd rasqqinalr seitrlqmel meyktgkrii deegvesind
      421 mfhenamlqt ennnlrvrik amqetvdalr aritqlmsdq anqvlarage gneeisnmih
      481 nyikeiedlr aklleseavn enlrrnlsra strsayfggp safsasmlss eketmeildi
      541 akkdleklkk kerkkkksvk edntdneqek rdekgtsere nneleaeeiq evsdhededd
      601 edddddddme vvessdesds dsdekenyqa dlanitceia ikqklidele nsqrrlqtlk
      661 kqyeeklmvl qhkirdtqle rdqvlqnlgs vetyseekak kikseyekkl qamnkelqrl
      721 qtaqkeharl lknqsqyekq lkklqqevte mkktkvrlmk qmkeeqekar mtesrrnrei
      781 aqlkkeqrkr ehqlklleaq krnqevilrr kteevtalrr qvrplsdkva gkvsrklslp
      841 ehaiqeasss ssvehdssrt vvqqkmripv arvqalsvta tngtgkkyqr kavtsrvyss
      901 kaarmkwqll errvtdiimq rmtisnmead mnrlltqree ltkrreklsk kreklikdgg
      961 gseaernvqn ineemeslta nidyindsis dcqanimqme eakeegetld vtavinactl
     1021 tearylldhf ltmginkglq aaqkeaqikv legrlkqtei tsatqnqllf hmlkekaeln
     1081 peldallgha lqenledstd edvplhspgt egsslssdll klcgevkpks karrrtttqm
     1141 ellyadssdl vsdisaadst lagalasvae tqesamaadt ndttardref ipppsglpsk
     1201 igsisrqpsl sekkitepsp ltkrkayekt mektkakeqk lsdsgapeas lspptsppsr
     1261 prnemnvfsr ltvsqgntsv qqdkgiinpf paskcikssp lqciytaegh tkavlcvdat
     1321 ddllftgskd rtckvwnlvt gqeimslggh pnnvvsvkyc nytslvftvs tsyikvwdir
     1381 dsakcirtlt ssgqampgdv csgstnrtva ipagenqinq ialnptgtfl yaaagnsvrm
     1441 wdlkrfqstg kltghqgpvm cltvdrisng qdlivtgskd hyikmfdvte galgsvspth
     1501 nfepphydgi ealaimgdnl fsgsrdngik kwdlaqkdll qqvpnahkdw vcalglvpga
     1561 pvllsgcrgg tlrlwnvdtf apigemkghd spinaictns sqiftaaddr tvriwkarni
     1621 idgqisdtgd gsedlasiem mgnk
//
LOCUS       XP_053922388            1634 aa            linear   VRT 09-MAR-2023
DEFINITION  kinesin-like protein KIF21A isoform X5 [Cuculus canorus].
ACCESSION   XP_053922388
VERSION     XP_053922388.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066413.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1634
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1634
                     /product="kinesin-like protein KIF21A isoform X5"
                     /calculated_mol_wt=183104
     Region          8..372
                     /region_name="KISc_KIF4"
                     /note="Kinesin motor domain, KIF4-like subfamily; cd01372"
                     /db_xref="CDD:276823"
     Site            order(17,88,91,93..96,274)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:276823"
     Site            order(324,327,330)
                     /site_type="other"
                     /note="microtubule interaction site [polypeptide binding]"
                     /db_xref="CDD:276823"
     Region          <389..1037
                     /region_name="SCP-1"
                     /note="Synaptonemal complex protein 1 (SCP-1); pfam05483"
                     /db_xref="CDD:114219"
     Region          638..>849
                     /region_name="EnvC"
                     /note="Septal ring factor EnvC, activator of murein
                     hydrolases AmiA and AmiB [Cell cycle control, cell
                     division, chromosome partitioning]; COG4942"
                     /db_xref="CDD:443969"
     Region          933..1016
                     /region_name="Rcc_KIF21A"
                     /note="regulatory coiled-coil domain found in kinesin-like
                     protein KIF21A; cd22263"
                     /db_xref="CDD:410204"
     Site            order(936..937,940..941,943..944,947..948,950..951,
                     954..955,957..958,961..962,964..965,968..969,972,977..978,
                     984..985,987..988,991..992,994..995,998..999,1001..1002,
                     1005..1006,1008..1009,1012..1013)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:410204"
     Region          1293..1606
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cd00200"
                     /db_xref="CDD:238121"
     Site            order(1300,1316,1320,1326..1327,1339..1340,1358,
                     1367..1368,1381..1382,1421,1431..1432,1445,1465,1470,
                     1476..1477,1495..1496,1512,1516,1522..1523,1536..1537,
                     1554,1559,1565..1566,1578..1579,1595,1599,1605..1606)
                     /site_type="active"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     Region          1305..1339
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1344..1381
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1409..1444
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1449..1493
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1501..1534
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1541..1577
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..1634
                     /gene="KIF21A"
                     /coded_by="XM_054066413.1:151..5055"
                     /db_xref="GeneID:104056081"
ORIGIN      
        1 msagqdessv rvavrirpql akekiegchi ctsvtpgepq vflgkdkaft fdyvfnidsq
       61 qeeiyrqcie kliegcfegy natvfaygqt gagktytmgt gfdvniteee qgiisravkh
      121 lfrcieekkq aaikqghppp dfkvnaqfle lyneeildlf dttrdidakn kksnikihed
      181 saggiytvgv ttrsvngese mmqclklgal srttastqmn vqssrshaif tihlcqtrvc
      241 pafntdnttd nriisessem nefetltakf hfvdlagser lkrtgatger akegisincg
      301 llalgnvisa lgdkskkath vpyrdskltr llqdslggns qtlmiacvsp sdrdfmetln
      361 tlkyanrarn iknkvmvnqd rasqqinalr seitrlqmel meyktgkrii deegvesind
      421 mfhenamlqt ennnlrvrik amqetvdalr aritqlmsdq anqvlarage gneeisnmih
      481 nyikeiedlr aklleseavn enlrrnlsra strsayfggp safsasmlss eketmeildi
      541 akkdleklkk kerkkkkrlq kleessqeer svkedntdne qekrdekgts erenneleae
      601 eiqevsdhed eddedddddd dmevvessde sdsdsdeken yqadlanitc eiaikqklid
      661 elensqrrlq tlkkqyeekl mvlqhkirdt qlerdqvlqn lgsvetysee kakkikseye
      721 kklqamnkel qrlqtaqkeh arllknqsqy ekqlkklqqe vtemkktkvr lmkqmkeeqe
      781 karmtesrrn reiaqlkkeq rkrehqlkll eaqkrnqevi lrrkteevta lrrqvrplsd
      841 kvagkvsrkl slpehaiqea sssssvehds srtvvqqkmr ipvarvqals vtatngtgkk
      901 yqrkavtsrv ysskaarmkw qllerrvtdi imqrmtisnm eadmnrlltq reeltkrrek
      961 lskkreklik dgggseaern vqnineemes ltanidyind sisdcqanim qmeeakeege
     1021 tldvtavina ctltearyll dhfltmgink glqaaqkeaq ikvlegrlkq teitsatqnq
     1081 llfhmlkeka elnpeldall ghalqdldsi sqenledstd edvplhspgt egsslssdll
     1141 klcgevkpks karrrtttqm ellyadssdl vsdisaadst lagalasvae tqesamaadt
     1201 ndttardref ipppsglpsk igsisrqpsl sekkitepsp ltkrkayekt mektkakeqk
     1261 lsdesdssls evhrgiinpf paskcikssp lqciytaegh tkavlcvdat ddllftgskd
     1321 rtckvwnlvt gqeimslggh pnnvvsvkyc nytslvftvs tsyikvwdir dsakcirtlt
     1381 ssgqampgdv csgstnrtva ipagenqinq ialnptgtfl yaaagnsvrm wdlkrfqstg
     1441 kltghqgpvm cltvdrisng qdlivtgskd hyikmfdvte galgsvspth nfepphydgi
     1501 ealaimgdnl fsgsrdngik kwdlaqkdll qqvpnahkdw vcalglvpga pvllsgcrgg
     1561 tlrlwnvdtf apigemkghd spinaictns sqiftaaddr tvriwkarni idgqisdtgd
     1621 gsedlasiem mgnk
//
LOCUS       XP_053922395            1621 aa            linear   VRT 09-MAR-2023
DEFINITION  kinesin-like protein KIF21A isoform X6 [Cuculus canorus].
ACCESSION   XP_053922395
VERSION     XP_053922395.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066420.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1621
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1621
                     /product="kinesin-like protein KIF21A isoform X6"
                     /calculated_mol_wt=181675
     Region          8..372
                     /region_name="KISc_KIF4"
                     /note="Kinesin motor domain, KIF4-like subfamily; cd01372"
                     /db_xref="CDD:276823"
     Site            order(17,88,91,93..96,274)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:276823"
     Site            order(324,327,330)
                     /site_type="other"
                     /note="microtubule interaction site [polypeptide binding]"
                     /db_xref="CDD:276823"
     Region          <389..1037
                     /region_name="SCP-1"
                     /note="Synaptonemal complex protein 1 (SCP-1); pfam05483"
                     /db_xref="CDD:114219"
     Region          638..>849
                     /region_name="EnvC"
                     /note="Septal ring factor EnvC, activator of murein
                     hydrolases AmiA and AmiB [Cell cycle control, cell
                     division, chromosome partitioning]; COG4942"
                     /db_xref="CDD:443969"
     Region          933..1016
                     /region_name="Rcc_KIF21A"
                     /note="regulatory coiled-coil domain found in kinesin-like
                     protein KIF21A; cd22263"
                     /db_xref="CDD:410204"
     Site            order(936..937,940..941,943..944,947..948,950..951,
                     954..955,957..958,961..962,964..965,968..969,972,977..978,
                     984..985,987..988,991..992,994..995,998..999,1001..1002,
                     1005..1006,1008..1009,1012..1013)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:410204"
     Region          1280..1593
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cd00200"
                     /db_xref="CDD:238121"
     Site            order(1287,1303,1307,1313..1314,1326..1327,1345,
                     1354..1355,1368..1369,1408,1418..1419,1432,1452,1457,
                     1463..1464,1482..1483,1499,1503,1509..1510,1523..1524,
                     1541,1546,1552..1553,1565..1566,1582,1586,1592..1593)
                     /site_type="active"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     Region          1292..1326
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1331..1368
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1396..1431
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1436..1480
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1488..1521
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1528..1564
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..1621
                     /gene="KIF21A"
                     /coded_by="XM_054066420.1:151..5016"
                     /db_xref="GeneID:104056081"
ORIGIN      
        1 msagqdessv rvavrirpql akekiegchi ctsvtpgepq vflgkdkaft fdyvfnidsq
       61 qeeiyrqcie kliegcfegy natvfaygqt gagktytmgt gfdvniteee qgiisravkh
      121 lfrcieekkq aaikqghppp dfkvnaqfle lyneeildlf dttrdidakn kksnikihed
      181 saggiytvgv ttrsvngese mmqclklgal srttastqmn vqssrshaif tihlcqtrvc
      241 pafntdnttd nriisessem nefetltakf hfvdlagser lkrtgatger akegisincg
      301 llalgnvisa lgdkskkath vpyrdskltr llqdslggns qtlmiacvsp sdrdfmetln
      361 tlkyanrarn iknkvmvnqd rasqqinalr seitrlqmel meyktgkrii deegvesind
      421 mfhenamlqt ennnlrvrik amqetvdalr aritqlmsdq anqvlarage gneeisnmih
      481 nyikeiedlr aklleseavn enlrrnlsra strsayfggp safsasmlss eketmeildi
      541 akkdleklkk kerkkkkrlq kleessqeer svkedntdne qekrdekgts erenneleae
      601 eiqevsdhed eddedddddd dmevvessde sdsdsdeken yqadlanitc eiaikqklid
      661 elensqrrlq tlkkqyeekl mvlqhkirdt qlerdqvlqn lgsvetysee kakkikseye
      721 kklqamnkel qrlqtaqkeh arllknqsqy ekqlkklqqe vtemkktkvr lmkqmkeeqe
      781 karmtesrrn reiaqlkkeq rkrehqlkll eaqkrnqevi lrrkteevta lrrqvrplsd
      841 kvagkvsrkl slpehaiqea sssssvehds srtvvqqkmr ipvarvqals vtatngtgkk
      901 yqrkavtsrv ysskaarmkw qllerrvtdi imqrmtisnm eadmnrlltq reeltkrrek
      961 lskkreklik dgggseaern vqnineemes ltanidyind sisdcqanim qmeeakeege
     1021 tldvtavina ctltearyll dhfltmgink glqaaqkeaq ikvlegrlkq teitsatqnq
     1081 llfhmlkeka elnpeldall ghalqdldsi sqenledstd edvplhspgt egsslssdll
     1141 klcgevkpks karrrtttqm ellyadssdl vsdisaadst lagalasvae tqesamaadt
     1201 ndttardref ipppsglpsk igsisrqpsl sekkitepsp ltkrkayekt mektkakeqk
     1261 lgiinpfpas kcikssplqc iytaeghtka vlcvdatddl lftgskdrtc kvwnlvtgqe
     1321 imslgghpnn vvsvkycnyt slvftvstsy ikvwdirdsa kcirtltssg qampgdvcsg
     1381 stnrtvaipa genqinqial nptgtflyaa agnsvrmwdl krfqstgklt ghqgpvmclt
     1441 vdrisngqdl ivtgskdhyi kmfdvtegal gsvspthnfe pphydgieal aimgdnlfsg
     1501 srdngikkwd laqkdllqqv pnahkdwvca lglvpgapvl lsgcrggtlr lwnvdtfapi
     1561 gemkghdspi naictnssqi ftaaddrtvr iwkarniidg qisdtgdgse dlasiemmgn
     1621 k
//
LOCUS       XP_053922402            1677 aa            linear   VRT 09-MAR-2023
DEFINITION  kinesin-like protein KIF21A isoform X7 [Cuculus canorus].
ACCESSION   XP_053922402
VERSION     XP_053922402.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066427.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1677
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1677
                     /product="kinesin-like protein KIF21A isoform X7"
                     /calculated_mol_wt=187644
     Region          8..372
                     /region_name="KISc_KIF4"
                     /note="Kinesin motor domain, KIF4-like subfamily; cd01372"
                     /db_xref="CDD:276823"
     Site            order(17,88,91,93..96,274)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:276823"
     Site            order(324,327,330)
                     /site_type="other"
                     /note="microtubule interaction site [polypeptide binding]"
                     /db_xref="CDD:276823"
     Region          <389..1037
                     /region_name="SCP-1"
                     /note="Synaptonemal complex protein 1 (SCP-1); pfam05483"
                     /db_xref="CDD:114219"
     Region          638..>849
                     /region_name="EnvC"
                     /note="Septal ring factor EnvC, activator of murein
                     hydrolases AmiA and AmiB [Cell cycle control, cell
                     division, chromosome partitioning]; COG4942"
                     /db_xref="CDD:443969"
     Region          933..1016
                     /region_name="Rcc_KIF21A"
                     /note="regulatory coiled-coil domain found in kinesin-like
                     protein KIF21A; cd22263"
                     /db_xref="CDD:410204"
     Site            order(936..937,940..941,943..944,947..948,950..951,
                     954..955,957..958,961..962,964..965,968..969,972,977..978,
                     984..985,987..988,991..992,994..995,998..999,1001..1002,
                     1005..1006,1008..1009,1012..1013)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:410204"
     Region          1336..1649
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cd00200"
                     /db_xref="CDD:238121"
     Site            order(1343,1359,1363,1369..1370,1382..1383,1401,
                     1410..1411,1424..1425,1464,1474..1475,1488,1508,1513,
                     1519..1520,1538..1539,1555,1559,1565..1566,1579..1580,
                     1597,1602,1608..1609,1621..1622,1638,1642,1648..1649)
                     /site_type="active"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     Region          1348..1382
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1387..1424
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1452..1487
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1492..1536
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1544..1577
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1584..1620
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..1677
                     /gene="KIF21A"
                     /coded_by="XM_054066427.1:152..5185"
                     /db_xref="GeneID:104056081"
ORIGIN      
        1 msagqdessv rvavrirpql akekiegchi ctsvtpgepq vflgkdkaft fdyvfnidsq
       61 qeeiyrqcie kliegcfegy natvfaygqt gagktytmgt gfdvniteee qgiisravkh
      121 lfrcieekkq aaikqghppp dfkvnaqfle lyneeildlf dttrdidakn kksnikihed
      181 saggiytvgv ttrsvngese mmqclklgal srttastqmn vqssrshaif tihlcqtrvc
      241 pafntdnttd nriisessem nefetltakf hfvdlagser lkrtgatger akegisincg
      301 llalgnvisa lgdkskkath vpyrdskltr llqdslggns qtlmiacvsp sdrdfmetln
      361 tlkyanrarn iknkvmvnqd rasqqinalr seitrlqmel meyktgkrii deegvesind
      421 mfhenamlqt ennnlrvrik amqetvdalr aritqlmsdq anqvlarage gneeisnmih
      481 nyikeiedlr aklleseavn enlrrnlsra strsayfggp safsasmlss eketmeildi
      541 akkdleklkk kerkkkkrlq kleessqeer svkedntdne qekrdekgts erenneleae
      601 eiqevsdhed eddedddddd dmevvessde sdsdsdeken yqadlanitc eiaikqklid
      661 elensqrrlq tlkkqyeekl mvlqhkirdt qlerdqvlqn lgsvetysee kakkikseye
      721 kklqamnkel qrlqtaqkeh arllknqsqy ekqlkklqqe vtemkktkvr lmkqmkeeqe
      781 karmtesrrn reiaqlkkeq rkrehqlkll eaqkrnqevi lrrkteevta lrrqvrplsd
      841 kvagkvsrkl slpehaiqea sssssvehds srtvvqqkmr ipvarvqals vtatngtgkk
      901 yqrkavtsrv ysskaarmkw qllerrvtdi imqrmtisnm eadmnrlltq reeltkrrek
      961 lskkreklik dgggseaern vqnineemes ltanidyind sisdcqanim qmeeakeege
     1021 tldvtavina ctltearyll dhfltmgink glqaaqkeaq ikvlegrlkq teitsatqnq
     1081 llfhmlkeka elnpeldall ghalqdldsi sqenledstd edvplhspgt egsslssdll
     1141 klcgevkpks karrrtttqm ellyadssdl vsdisaadst lagalasvae tqesamaadt
     1201 ndttardref ipppsglpsk igsisrqpsl sekkitepsp ltkrkayekt mektkakeqk
     1261 lsdsgapeas lspptsppsr prnemnvfsr ltvsqgntsv qqdksdesds slsevhrgii
     1321 npfpaskcik ssplqciyta eghtkavlcv datddllftg skdrtckvwn lvtgqeimsl
     1381 gghpnnvvsv kycnytslvf tvstsyikvw dirdsakcir tltssgqamp gdvcsgstnr
     1441 tvaipagenq inqialnptg tflyaaagns vrmwdlkrfq stgkltghqg pvmcltvdri
     1501 sngqdlivtg skdhyikmfd vtegalgsvs pthnfepphy dgiealaimg dnlfsgsrdn
     1561 gikkwdlaqk dllqqvpnah kdwvcalglv pgapvllsgc rggtlrlwnv dtfapigemk
     1621 ghdspinaic tnssqiftaa ddrtvriwka rniidgqisd tgdgsedlas iemmgnk
//
LOCUS       XP_053922414             376 aa            linear   VRT 09-MAR-2023
DEFINITION  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma [Cuculus
            canorus].
ACCESSION   XP_053922414
VERSION     XP_053922414.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066439.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..376
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase
                     gamma"
                     /calculated_mol_wt=43472
     Region          12..325
                     /region_name="PLN02380"
                     /note="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /db_xref="CDD:178006"
     CDS             1..376
                     /gene="AGPAT3"
                     /coded_by="XM_054066439.1:361..1491"
                     /db_xref="GeneID:104059247"
ORIGIN      
        1 mgfiaflktq fivhlligfv fvvsgliinf iqlctlvlwp inkqfyrrvn crlayslwsq
       61 lvmllewwsg tectlfsdea tvntfgkehv iiilnhnfei dflcgwtmte rfgvlgsskv
      121 lakrellyvp ligwtwyfle ivfckrkwee drdtvieglk rladypeymw fllycegtrf
      181 tetkhrisme vaeskglpkl kyhllprtkg fttavqclrg tvsavydvtl nfrgnknpsl
      241 lgilygkkye admcvrrfpl edipqdekea anwlhklyqe kdalqemynq egifpgqqfk
      301 pprrpwtlln flfwatvlls plftfgfgvf asgspllila flglvgaasf gvrrligvte
      361 iekgssygnq efkkke
//
LOCUS       XP_009559189             376 aa            linear   VRT 09-MAR-2023
DEFINITION  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma [Cuculus
            canorus].
ACCESSION   XP_009559189
VERSION     XP_009559189.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560894.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..376
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase
                     gamma"
                     /calculated_mol_wt=43472
     Region          12..325
                     /region_name="PLN02380"
                     /note="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /db_xref="CDD:178006"
     CDS             1..376
                     /gene="AGPAT3"
                     /coded_by="XM_009560894.2:226..1356"
                     /db_xref="GeneID:104059247"
ORIGIN      
        1 mgfiaflktq fivhlligfv fvvsgliinf iqlctlvlwp inkqfyrrvn crlayslwsq
       61 lvmllewwsg tectlfsdea tvntfgkehv iiilnhnfei dflcgwtmte rfgvlgsskv
      121 lakrellyvp ligwtwyfle ivfckrkwee drdtvieglk rladypeymw fllycegtrf
      181 tetkhrisme vaeskglpkl kyhllprtkg fttavqclrg tvsavydvtl nfrgnknpsl
      241 lgilygkkye admcvrrfpl edipqdekea anwlhklyqe kdalqemynq egifpgqqfk
      301 pprrpwtlln flfwatvlls plftfgfgvf asgspllila flglvgaasf gvrrligvte
      361 iekgssygnq efkkke
//
LOCUS       XP_053922419             376 aa            linear   VRT 09-MAR-2023
DEFINITION  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma [Cuculus
            canorus].
ACCESSION   XP_053922419
VERSION     XP_053922419.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066444.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..376
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase
                     gamma"
                     /calculated_mol_wt=43472
     Region          12..325
                     /region_name="PLN02380"
                     /note="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /db_xref="CDD:178006"
     CDS             1..376
                     /gene="AGPAT3"
                     /coded_by="XM_054066444.1:240..1370"
                     /db_xref="GeneID:104059247"
ORIGIN      
        1 mgfiaflktq fivhlligfv fvvsgliinf iqlctlvlwp inkqfyrrvn crlayslwsq
       61 lvmllewwsg tectlfsdea tvntfgkehv iiilnhnfei dflcgwtmte rfgvlgsskv
      121 lakrellyvp ligwtwyfle ivfckrkwee drdtvieglk rladypeymw fllycegtrf
      181 tetkhrisme vaeskglpkl kyhllprtkg fttavqclrg tvsavydvtl nfrgnknpsl
      241 lgilygkkye admcvrrfpl edipqdekea anwlhklyqe kdalqemynq egifpgqqfk
      301 pprrpwtlln flfwatvlls plftfgfgvf asgspllila flglvgaasf gvrrligvte
      361 iekgssygnq efkkke
//
LOCUS       XP_053922433            2657 aa            linear   VRT 09-MAR-2023
DEFINITION  centrosomal protein of 290 kDa isoform X1 [Cuculus canorus].
ACCESSION   XP_053922433
VERSION     XP_053922433.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066458.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2657
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2657
                     /product="centrosomal protein of 290 kDa isoform X1"
                     /calculated_mol_wt=309717
     Region          70..>373
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     Region          264..1008
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          <991..>1249
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     Region          1210..1991
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          1283..1410
                     /region_name="CEP209_CC5"
                     /note="Coiled-coil region of centrosome protein CE290;
                     pfam16574"
                     /db_xref="CDD:465184"
     Region          <1817..2418
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          <2298..2620
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..2657
                     /gene="CEP290"
                     /coded_by="XM_054066458.1:148..8121"
                     /db_xref="GeneID:104058432"
ORIGIN      
        1 mapildwkkl mkvdpdalpq qeelvdrwle tvsevdekdl krgtpeqlih lfkitqslmk
       61 mkaqeavlai eevdrageeq akcenefktk mmklqneler algsaggrdt rflrdeicql
      121 enqleqkerq ltavekelek ekkvneqlal riedaeneni klkrendqlr qdvvdyqrqi
      181 dsqkeavllr rgedsdyrsq lskknfelvq cldeiqnlte tnekldiqnq emrknleesv
      241 qemekmtdey nkmkrivqqs divmdqlrke neqykfqvqe lsdqlkakne eddplmaavn
      301 akveewkkil askddelley qqmlfhlnek iklfqldvdr nsivtlqqgi qdrdaqirll
      361 teqveqytke meknaflmee lkndlqkgkg hssvaqqnri gdvqeklkml eertkeaeks
      421 aelaeadare kdkqlvealk rmklyelgvy gleeavaeik dlekeikird nkietlikev
      481 nklelkindf ldeneelrer lglepktmid lnefrssktl kqqqyraenq illqeierle
      541 eerielkqqv rnlakekgrr vatigldpgd vemtdsftee kgmnkrkldf lnghdvaevk
      601 akneylanel sererdlekn rtviakfqck lkelseenkq leqgmkeilq avkemqkdss
      661 ikggetalii psldrlvnam esknsegnfd vqvhlktqvd qltgrneelr qelkqtqkea
      721 anfsnqlata nekiaelkne isllresega nvvfrtvnlp egmvpssvnm inslneylih
      781 liqelenkeq llkqledave nykrkfavir hqqgllykey qsqkeswqke senmkeekkk
      841 leeqkeqdat kikaysnlln alqldpdetk kvlaennrki tvlrvnersl trqyttllet
      901 erhlrqenek lrseithmet avigkignlq rfkemanfki aalqkvldhs vplselelan
      961 kqynaltaky rdmlqkdnll vqqttnmehv ereneslkaq inllnqelei tkeklhtveq
     1021 aweqmtklgd dnamdkatka itnseilsis kkitmlemke lnerqraehs qrmyehlrnt
     1081 vkqieernfe letkfaeltk inleaqkveq elrdelsksv skavsdadrq qimdlekrem
     1141 elkievsklr elsdvakmqv dalearqqyr dkeveslrme ildyqaqsde kaviaklhqr
     1201 ivalegsesf avgkletlks klqkveihnl rleqkldeke qalyfarleg rnrakhlqqt
     1261 vqslrrqfsg alplaqqeki sktviqlqnd klkvleevqh aqqerrnaen raleadlklk
     1321 sleellsalk dtrgaqkvie whmkmeelrl qelklnrelv kqkeevkylh niiseyerti
     1381 ntleeeivqq nkfheerqms wdqrevelqr qldqydhqqn etlntvlkfe eaagsvpdss
     1441 lpipqqlela lrkiqehiri vletratcks leeklkekea alwkaeqnvi srdkiinelr
     1501 lqlpgtsere kimaelskqe ddpesyhtak ivhqtianmq arlnqkeevl kkyqqllaka
     1561 reeqeetakk needlrvlqq klnlhtdnsl nkvkqtalel vkqsslsssn kqflrlaeme
     1621 rtvaeqdnsl aslvvklkkt ssdlkkqkli tlmkvkefet iraqlqekht vdvqqlkeea
     1681 nglrnklfqm emelanvkte levqkeannr aptvtlknlv eqlksqlaik ekqqkalska
     1741 llelraemta naeqqiisaa sqkeaymnvq eivdrqtkgl ttqieelnne itkltenlki
     1801 sktresslss erdelsqelq kkqkafdkmq veknemeken eelkkrvkrl sssiqskade
     1861 qnlvdalqkk ikkleselek kcetekkdvr edktskeeii rweegkkwqi rmeglrnklr
     1921 ekekeadala kqlntlkeic tktekeksal qkklkttgvt vdrvvgvras etekeleelr
     1981 krnldlenei ahmrtqqaip rdsvveelhf knqylqemih alrrqcsret ysrpssvpis
     2041 vsrqkflnsl qkksvsnrde ikhqtnhsit dgneidvead mqtcivpneg heatvdsste
     2101 dkdadvsreg lknknvtead kencsereen itqpenekle efeeeekqei lkqsnvdeee
     2161 cveepytdrm scnqsdsgep slqangyeae kinvnneinq dtaedtdetc qsgaegvert
     2221 lefcempets gigsddqyrr eqevlkenlr lssenvelrf qleqankdlp rlkdqvgdlk
     2281 emcellkkek adierklgsi rgagrsgktv pelektiglm kkvvervqre nedlkkapav
     2341 vsnekllsle qenerlksem ekmelhlegq lslhyesktk gmekviaene rlrkelkkea
     2401 dsgeklriak nnleilnekl tvqlaetikr lnlaesqfde adskswrsia ltrmheskmk
     2461 ememdiakkt qtitelkrll qeaterehna dknlqdlkeq ieclkhfpeg arteesfire
     2521 lqllrstnnq lekekaelah qvehckhhrh iytsegpaag hneivqkdkn dklmleiadl
     2581 qtllkasele kqqlqeetkk lrrelenfgp sffeeiedlk ynynkevkkn iileerlqql
     2641 seefgiqlds svnvsid
//
LOCUS       XP_053922436            2464 aa            linear   VRT 09-MAR-2023
DEFINITION  centrosomal protein of 290 kDa isoform X2 [Cuculus canorus].
ACCESSION   XP_053922436
VERSION     XP_053922436.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066461.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2464
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2464
                     /product="centrosomal protein of 290 kDa isoform X2"
                     /calculated_mol_wt=287953
     Region          70..>373
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     Region          264..1008
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          <991..>1249
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     Region          1210..1991
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          1283..1410
                     /region_name="CEP209_CC5"
                     /note="Coiled-coil region of centrosome protein CE290;
                     pfam16574"
                     /db_xref="CDD:465184"
     Region          1654..2427
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..2464
                     /gene="CEP290"
                     /coded_by="XM_054066461.1:148..7542"
                     /db_xref="GeneID:104058432"
ORIGIN      
        1 mapildwkkl mkvdpdalpq qeelvdrwle tvsevdekdl krgtpeqlih lfkitqslmk
       61 mkaqeavlai eevdrageeq akcenefktk mmklqneler algsaggrdt rflrdeicql
      121 enqleqkerq ltavekelek ekkvneqlal riedaeneni klkrendqlr qdvvdyqrqi
      181 dsqkeavllr rgedsdyrsq lskknfelvq cldeiqnlte tnekldiqnq emrknleesv
      241 qemekmtdey nkmkrivqqs divmdqlrke neqykfqvqe lsdqlkakne eddplmaavn
      301 akveewkkil askddelley qqmlfhlnek iklfqldvdr nsivtlqqgi qdrdaqirll
      361 teqveqytke meknaflmee lkndlqkgkg hssvaqqnri gdvqeklkml eertkeaeks
      421 aelaeadare kdkqlvealk rmklyelgvy gleeavaeik dlekeikird nkietlikev
      481 nklelkindf ldeneelrer lglepktmid lnefrssktl kqqqyraenq illqeierle
      541 eerielkqqv rnlakekgrr vatigldpgd vemtdsftee kgmnkrkldf lnghdvaevk
      601 akneylanel sererdlekn rtviakfqck lkelseenkq leqgmkeilq avkemqkdss
      661 ikggetalii psldrlvnam esknsegnfd vqvhlktqvd qltgrneelr qelkqtqkea
      721 anfsnqlata nekiaelkne isllresega nvvfrtvnlp egmvpssvnm inslneylih
      781 liqelenkeq llkqledave nykrkfavir hqqgllykey qsqkeswqke senmkeekkk
      841 leeqkeqdat kikaysnlln alqldpdetk kvlaennrki tvlrvnersl trqyttllet
      901 erhlrqenek lrseithmet avigkignlq rfkemanfki aalqkvldhs vplselelan
      961 kqynaltaky rdmlqkdnll vqqttnmehv ereneslkaq inllnqelei tkeklhtveq
     1021 aweqmtklgd dnamdkatka itnseilsis kkitmlemke lnerqraehs qrmyehlrnt
     1081 vkqieernfe letkfaeltk inleaqkveq elrdelsksv skavsdadrq qimdlekrem
     1141 elkievsklr elsdvakmqv dalearqqyr dkeveslrme ildyqaqsde kaviaklhqr
     1201 ivalegsesf avgkletlks klqkveihnl rleqkldeke qalyfarleg rnrakhlqqt
     1261 vqslrrqfsg alplaqqeki sktviqlqnd klkvleevqh aqqerrnaen raleadlklk
     1321 sleellsalk dtrgaqkvie whmkmeelrl qelklnrelv kqkeevkylh niiseyerti
     1381 ntleeeivqq nkfheerqms wdqrevelqr qldqydhqqn etlntvlkfe eaagsvpdss
     1441 lpipqqlela lrkiqehiri vletratcks leeklkekea alwkaeqnvi srdkiinelr
     1501 lqlpgtsere kimaelskqe ddpesyhtak ivhqtianmq arlnqkeevl kkyqqllaka
     1561 reeqeetakk needlrvlqq klnlhtdnsl nkvkqtalel vkqsslsssn kqflrlaeme
     1621 rtvaeqdnsl aslvvklkkt ssdlkkqkli tlmkvkefet iraqlqekht vdvqqlkeea
     1681 nglrnklfqm emelanvkte levqkeannr aptvtlknlv eqlksqlaik ekqqkalska
     1741 llelraemta naeqqiisaa sqkeaymnvq eivdrqtkgl ttqieelnne itkltenlki
     1801 sktresslss erdelsqelq kkqkafdkmq veknemeken eelkkrvkrl sssiqskade
     1861 qnlvdalqkk ikkleselek kcetekkdvr edktskeeii rweegkkwqi rmeglrnklr
     1921 ekekeadala kqlntlkeic tktekeksal qkklkttgvt vdrvvgvras etekeleelr
     1981 krnldlenei ahmrtqqaip rdsvveelhf knqylqemih alrrqcsret ysrpstsgig
     2041 sddqyrreqe vlkenlrlss envelrfqle qankdlprlk dqvgdlkemc ellkkekadi
     2101 erklgsirga grsgktvpel ektiglmkkv vervqrened lkkapavvsn ekllsleqen
     2161 erlksemekm elhlegqlsl hyesktkgme kviaenerlr kelkkeadsg eklriaknnl
     2221 eilnekltvq laetikrlnl aesqfdeads kswrsialtr mheskmkeme mdiakktqti
     2281 telkrllqea terehnadkn lqdlkeqiec lkhfpegart eesfirelql lrstnnqlek
     2341 ekaelahqve hckhhrhiyt segpaaghne ivqkdkndkl mleiadlqtl lkaselekqq
     2401 lqeetkklrr elenfgpsff eeiedlkyny nkevkkniil eerlqqlsee fgiqldssvn
     2461 vsid
//
LOCUS       XP_053922449             324 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein C12orf29 homolog [Cuculus canorus].
ACCESSION   XP_053922449
VERSION     XP_053922449.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066474.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..324
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..324
                     /product="uncharacterized protein C12orf29 homolog"
                     /calculated_mol_wt=37115
     Region          1..323
                     /region_name="DUF5565"
                     /note="Family of unknown function (DUF5565); pfam17720"
                     /db_xref="CDD:407596"
     CDS             1..324
                     /gene="C1H12orf29"
                     /coded_by="XM_054066474.1:58..1032"
                     /db_xref="GeneID:104058438"
ORIGIN      
        1 mrrlsavqrk vpclfvtevk eepsakrehq pfkvlateti tgkaleadiy naiptekvdg
       61 tccyvttykg qpylwarldr kpnkqaekrf krflhsledc kefvwnveed fkpvpdtwip
      121 akdiefsngn plpddnghmp gwvpveknsk qycwhssvvn yeakaalvlr hhaepgllei
      181 slvplseile qtleligtni nanpyglgsk kqpihllvph gafeiknppt lkqndivswf
      241 egciegkveg ivwhchdgcl iklhrhhlgl rwplaetyln sqpvvisfdr tkydcdfepk
      301 slfhhfsnln gqrfdrlkdi kfda
//
LOCUS       XP_053922464            2823 aa            linear   VRT 09-MAR-2023
DEFINITION  teneurin-4 isoform X1 [Cuculus canorus].
ACCESSION   XP_053922464
VERSION     XP_053922464.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066489.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2823
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2823
                     /product="teneurin-4 isoform X1"
                     /calculated_mol_wt=313706
     Region          11..403
                     /region_name="Ten_N"
                     /note="Teneurin Intracellular Region; pfam06484"
                     /db_xref="CDD:461932"
     Region          684..883
                     /region_name="DUF5885"
                     /note="Family of unknown function (DUF5885); pfam19232"
                     /db_xref="CDD:437064"
     Region          1276..1617
                     /region_name="NHL"
                     /note="NHL repeat unit of beta-propeller proteins;
                     cl18310"
                     /db_xref="CDD:302697"
     Region          1286..1325
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1337..1380
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1404..1442
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1460..1499
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1523..1556
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1591..1617
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1650..2515
                     /region_name="RhsA"
                     /note="Uncharacterized conserved protein RhaS, contains 28
                     RHS repeats [General function prediction only]; COG3209"
                     /db_xref="CDD:442442"
     Region          2739..2816
                     /region_name="Tox-GHH"
                     /note="GHH signature containing HNH/Endo VII superfamily
                     nuclease toxin; pfam15636"
                     /db_xref="CDD:464783"
     CDS             1..2823
                     /gene="TENM4"
                     /coded_by="XM_054066489.1:453..8924"
                     /db_xref="GeneID:104064148"
ORIGIN      
        1 mdvkerkpyr sltrrrdter rytsssaese dskvpqksys ssetlkaydq dsrltygnrv
       61 kdmvhqeade fcraganfsl relgledvtp thgtlyrtdi glphcsysis agsdadtead
      121 vvmspehpvr lwgrntksgr ssclssrans nltltdtehe ntetgpplrg ssasssppsp
      181 ppsppanpga gralgsgaap agsdseeefv pnsflvksgs gnlcvasndh ppnlqnhsrl
      241 rtppppisha htpnqhhaas inslnrgnft prsnpspapt dhslsgeqpa stqepahaqd
      301 nwllnsnipl etrniakqtf letlqdnlie mdiltssrhd gayndghflf kpggtsplfc
      361 ttspgyplts stvysppprp lprstfsrpa fnlkkpykyc nwkcaalsai visvtlvill
      421 ayfiamhlfg lnwhlqpmeg qmyeitedta sswpvptdvs lypsggtgle lpdrkgkgts
      481 egkpssffpd dsfidsgeid vgrratqkip pgifwrsqvf idhpvhlkfn vslgkaalvg
      541 iygrkglpps htqfdfvell dgrrllaqea rslegpqrqh rafvplsshe tgfiqyldsg
      601 iwhlafyndg kesevvsflt taiesvdncp sncygngdcv sgtchcflgf lgpdcgrasc
      661 pvlcsgngqy mkgrclchsg wkgaecdvpt nqcidiscnn hgtcimgtci cnpgykgesc
      721 eevdcmdptc sgrgvcvrge chcsvgwggt ncetpratcl dqcsghgtfl pdtglcscdp
      781 nwtghdcsie icaadcgghg icvggtcrce egwmgtacdq rachprcneh gtcrdgkcec
      841 spgwngehct iegcpglcng ngrctldmng whcvcqlgwr gagcdtsmet acgdgkdndg
      901 dglvdcmdpd cclqplchvn alclgspdpl diiqetqapi sqqslhsfyd rikfligkds
      961 thvipgdnpf egghacvirg qvmtadgtpl vgvnisfvnn plfgytisrq dgsfdlvtig
     1021 gisiilhfer apfitqehtl wlpwdrffvm etivmrheen eipscdlsnf arpnpvvsps
     1081 pltsfasscs ekgpivpeiq alqeeinisg skikvsylss rtagyksvlr ismthptipf
     1141 nlmkvhlmva vegrlfrkwf aaapdlsyyf iwdktdvysq kvyglseafv svgyeyescp
     1201 dlilwekrta vlqgyeidas klggwsldkh halniqsgil hkgngenqfi sqqppvigsi
     1261 mgngrrrsis cpscngladg nkllapvalt cgsdgslyvg dfnyirrifp sgnvtnilel
     1321 rnkdfrhshs pahkyylttd pitgsvylsd tnsrriykik sttsvkdivk nsevlagtgd
     1381 qclpfddtrc gdggkgtdat ltnprgitvd kfgliyfvdg tmirridqng iistvlgsnd
     1441 ltsarplscd svmdisqvrl ewptdlavnp mdnslyvldn nvvlqisenh qvrivagrpm
     1501 hcqvpgmdhf llskvaihat lesatalavs hngvlyiaet dekkinrirq vttngeislv
     1561 agapsscdck ndancdcfsg ddgyakdakl napsslavca dgelyvadlg nirirfirkn
     1621 kpflnmqnly elsspidqel ylfdtsgkhl ytqslttgdy lynftysgdg ditlitdnng
     1681 nlvnirrdst gmplwlvvpd gqvywvtmgt nsalksvttq ghevammtyh gssgllatks
     1741 nengwttfye ydgfgrltnv tfptgqvssf rsdtdssvhv qvetsskddv tittnlsasg
     1801 afytllqdqv rnsyyigadg slrlilangm evalqtephl lagtvnptvg krnvtlpidn
     1861 glnlvewrqr keqargqvtv fgrrlrvhnr nllsldfdrv trtekiyddh rkftlrilyd
     1921 qagrpslwsp ssrlngvnvt yspgghiagi qrgtmserme ydqsgritsr ifadgkswsy
     1981 tyleksmvll lhsqrqyife fdkndrlssv tmpnvarqtl etirsigyyr niyrppegna
     2041 sviqdftede qllhtlylgt grrviykygk lsklaemlyd ttkisftyde tagmlktinl
     2101 qnegftctir yrqigplidr qifrfteegm vnarfdynyd nsfrvtsmqa vinetplpid
     2161 lyryddvsgk teqfgkfgvi yydinqiitt avmthtkhfd aygrmkevqy eifrslmywm
     2221 tvqydnmgrv vkkelkvgpy anttrysyey dadgqlqtvs indkplwrys ydlngnlhll
     2281 spgnsarltp lrydlrdrit rlgdvqykmd edgflkqrgn difeynsagl likaynkasg
     2341 wsvkyrydgl grrvssktsh ghhlqffyad ltnptkvthl ynhssseits lyydlqghlf
     2401 amelssgdef yiacdnigtp lavfsgtglm ikqilytayg eiymdtnpnf qiiigyhggl
     2461 ydpftklihm grrdydvlag rwtspdhdmw khlssnnimp fnlymfknnn pisnsqdikc
     2521 ymtdvnswll tfgfqlhnvi pgypkpdtda mepsyeliht qmktqewdns ksilgvqcev
     2581 qkqlkafvtl erfeqiysss iagcrqvrkn knfasggsif gkgvkfamkd grvttdiisv
     2641 anedgrriaa ilnnahylen lhftidgvdt hyfikqgpse gdlsilglsg grrtlengvn
     2701 vtvsqintvl ggrtrrytdi qlqygalcln trygttldee karvlelarq ravtqawsre
     2761 qqrlrdgeeg irswtegekq qvlntgrvqg ydgyfvisve qypelsdsan nihfmrqsem
     2821 grr
//
LOCUS       XP_053922473            2823 aa            linear   VRT 09-MAR-2023
DEFINITION  teneurin-4 isoform X1 [Cuculus canorus].
ACCESSION   XP_053922473
VERSION     XP_053922473.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066498.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2823
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2823
                     /product="teneurin-4 isoform X1"
                     /calculated_mol_wt=313706
     Region          11..403
                     /region_name="Ten_N"
                     /note="Teneurin Intracellular Region; pfam06484"
                     /db_xref="CDD:461932"
     Region          684..883
                     /region_name="DUF5885"
                     /note="Family of unknown function (DUF5885); pfam19232"
                     /db_xref="CDD:437064"
     Region          1276..1617
                     /region_name="NHL"
                     /note="NHL repeat unit of beta-propeller proteins;
                     cl18310"
                     /db_xref="CDD:302697"
     Region          1286..1325
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1337..1380
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1404..1442
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1460..1499
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1523..1556
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1591..1617
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1650..2515
                     /region_name="RhsA"
                     /note="Uncharacterized conserved protein RhaS, contains 28
                     RHS repeats [General function prediction only]; COG3209"
                     /db_xref="CDD:442442"
     Region          2739..2816
                     /region_name="Tox-GHH"
                     /note="GHH signature containing HNH/Endo VII superfamily
                     nuclease toxin; pfam15636"
                     /db_xref="CDD:464783"
     CDS             1..2823
                     /gene="TENM4"
                     /coded_by="XM_054066498.1:561..9032"
                     /db_xref="GeneID:104064148"
ORIGIN      
        1 mdvkerkpyr sltrrrdter rytsssaese dskvpqksys ssetlkaydq dsrltygnrv
       61 kdmvhqeade fcraganfsl relgledvtp thgtlyrtdi glphcsysis agsdadtead
      121 vvmspehpvr lwgrntksgr ssclssrans nltltdtehe ntetgpplrg ssasssppsp
      181 ppsppanpga gralgsgaap agsdseeefv pnsflvksgs gnlcvasndh ppnlqnhsrl
      241 rtppppisha htpnqhhaas inslnrgnft prsnpspapt dhslsgeqpa stqepahaqd
      301 nwllnsnipl etrniakqtf letlqdnlie mdiltssrhd gayndghflf kpggtsplfc
      361 ttspgyplts stvysppprp lprstfsrpa fnlkkpykyc nwkcaalsai visvtlvill
      421 ayfiamhlfg lnwhlqpmeg qmyeitedta sswpvptdvs lypsggtgle lpdrkgkgts
      481 egkpssffpd dsfidsgeid vgrratqkip pgifwrsqvf idhpvhlkfn vslgkaalvg
      541 iygrkglpps htqfdfvell dgrrllaqea rslegpqrqh rafvplsshe tgfiqyldsg
      601 iwhlafyndg kesevvsflt taiesvdncp sncygngdcv sgtchcflgf lgpdcgrasc
      661 pvlcsgngqy mkgrclchsg wkgaecdvpt nqcidiscnn hgtcimgtci cnpgykgesc
      721 eevdcmdptc sgrgvcvrge chcsvgwggt ncetpratcl dqcsghgtfl pdtglcscdp
      781 nwtghdcsie icaadcgghg icvggtcrce egwmgtacdq rachprcneh gtcrdgkcec
      841 spgwngehct iegcpglcng ngrctldmng whcvcqlgwr gagcdtsmet acgdgkdndg
      901 dglvdcmdpd cclqplchvn alclgspdpl diiqetqapi sqqslhsfyd rikfligkds
      961 thvipgdnpf egghacvirg qvmtadgtpl vgvnisfvnn plfgytisrq dgsfdlvtig
     1021 gisiilhfer apfitqehtl wlpwdrffvm etivmrheen eipscdlsnf arpnpvvsps
     1081 pltsfasscs ekgpivpeiq alqeeinisg skikvsylss rtagyksvlr ismthptipf
     1141 nlmkvhlmva vegrlfrkwf aaapdlsyyf iwdktdvysq kvyglseafv svgyeyescp
     1201 dlilwekrta vlqgyeidas klggwsldkh halniqsgil hkgngenqfi sqqppvigsi
     1261 mgngrrrsis cpscngladg nkllapvalt cgsdgslyvg dfnyirrifp sgnvtnilel
     1321 rnkdfrhshs pahkyylttd pitgsvylsd tnsrriykik sttsvkdivk nsevlagtgd
     1381 qclpfddtrc gdggkgtdat ltnprgitvd kfgliyfvdg tmirridqng iistvlgsnd
     1441 ltsarplscd svmdisqvrl ewptdlavnp mdnslyvldn nvvlqisenh qvrivagrpm
     1501 hcqvpgmdhf llskvaihat lesatalavs hngvlyiaet dekkinrirq vttngeislv
     1561 agapsscdck ndancdcfsg ddgyakdakl napsslavca dgelyvadlg nirirfirkn
     1621 kpflnmqnly elsspidqel ylfdtsgkhl ytqslttgdy lynftysgdg ditlitdnng
     1681 nlvnirrdst gmplwlvvpd gqvywvtmgt nsalksvttq ghevammtyh gssgllatks
     1741 nengwttfye ydgfgrltnv tfptgqvssf rsdtdssvhv qvetsskddv tittnlsasg
     1801 afytllqdqv rnsyyigadg slrlilangm evalqtephl lagtvnptvg krnvtlpidn
     1861 glnlvewrqr keqargqvtv fgrrlrvhnr nllsldfdrv trtekiyddh rkftlrilyd
     1921 qagrpslwsp ssrlngvnvt yspgghiagi qrgtmserme ydqsgritsr ifadgkswsy
     1981 tyleksmvll lhsqrqyife fdkndrlssv tmpnvarqtl etirsigyyr niyrppegna
     2041 sviqdftede qllhtlylgt grrviykygk lsklaemlyd ttkisftyde tagmlktinl
     2101 qnegftctir yrqigplidr qifrfteegm vnarfdynyd nsfrvtsmqa vinetplpid
     2161 lyryddvsgk teqfgkfgvi yydinqiitt avmthtkhfd aygrmkevqy eifrslmywm
     2221 tvqydnmgrv vkkelkvgpy anttrysyey dadgqlqtvs indkplwrys ydlngnlhll
     2281 spgnsarltp lrydlrdrit rlgdvqykmd edgflkqrgn difeynsagl likaynkasg
     2341 wsvkyrydgl grrvssktsh ghhlqffyad ltnptkvthl ynhssseits lyydlqghlf
     2401 amelssgdef yiacdnigtp lavfsgtglm ikqilytayg eiymdtnpnf qiiigyhggl
     2461 ydpftklihm grrdydvlag rwtspdhdmw khlssnnimp fnlymfknnn pisnsqdikc
     2521 ymtdvnswll tfgfqlhnvi pgypkpdtda mepsyeliht qmktqewdns ksilgvqcev
     2581 qkqlkafvtl erfeqiysss iagcrqvrkn knfasggsif gkgvkfamkd grvttdiisv
     2641 anedgrriaa ilnnahylen lhftidgvdt hyfikqgpse gdlsilglsg grrtlengvn
     2701 vtvsqintvl ggrtrrytdi qlqygalcln trygttldee karvlelarq ravtqawsre
     2761 qqrlrdgeeg irswtegekq qvlntgrvqg ydgyfvisve qypelsdsan nihfmrqsem
     2821 grr
//
LOCUS       XP_053922479            2823 aa            linear   VRT 09-MAR-2023
DEFINITION  teneurin-4 isoform X1 [Cuculus canorus].
ACCESSION   XP_053922479
VERSION     XP_053922479.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066504.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2823
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2823
                     /product="teneurin-4 isoform X1"
                     /calculated_mol_wt=313706
     Region          11..403
                     /region_name="Ten_N"
                     /note="Teneurin Intracellular Region; pfam06484"
                     /db_xref="CDD:461932"
     Region          684..883
                     /region_name="DUF5885"
                     /note="Family of unknown function (DUF5885); pfam19232"
                     /db_xref="CDD:437064"
     Region          1276..1617
                     /region_name="NHL"
                     /note="NHL repeat unit of beta-propeller proteins;
                     cl18310"
                     /db_xref="CDD:302697"
     Region          1286..1325
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1337..1380
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1404..1442
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1460..1499
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1523..1556
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1591..1617
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1650..2515
                     /region_name="RhsA"
                     /note="Uncharacterized conserved protein RhaS, contains 28
                     RHS repeats [General function prediction only]; COG3209"
                     /db_xref="CDD:442442"
     Region          2739..2816
                     /region_name="Tox-GHH"
                     /note="GHH signature containing HNH/Endo VII superfamily
                     nuclease toxin; pfam15636"
                     /db_xref="CDD:464783"
     CDS             1..2823
                     /gene="TENM4"
                     /coded_by="XM_054066504.1:318..8789"
                     /db_xref="GeneID:104064148"
ORIGIN      
        1 mdvkerkpyr sltrrrdter rytsssaese dskvpqksys ssetlkaydq dsrltygnrv
       61 kdmvhqeade fcraganfsl relgledvtp thgtlyrtdi glphcsysis agsdadtead
      121 vvmspehpvr lwgrntksgr ssclssrans nltltdtehe ntetgpplrg ssasssppsp
      181 ppsppanpga gralgsgaap agsdseeefv pnsflvksgs gnlcvasndh ppnlqnhsrl
      241 rtppppisha htpnqhhaas inslnrgnft prsnpspapt dhslsgeqpa stqepahaqd
      301 nwllnsnipl etrniakqtf letlqdnlie mdiltssrhd gayndghflf kpggtsplfc
      361 ttspgyplts stvysppprp lprstfsrpa fnlkkpykyc nwkcaalsai visvtlvill
      421 ayfiamhlfg lnwhlqpmeg qmyeitedta sswpvptdvs lypsggtgle lpdrkgkgts
      481 egkpssffpd dsfidsgeid vgrratqkip pgifwrsqvf idhpvhlkfn vslgkaalvg
      541 iygrkglpps htqfdfvell dgrrllaqea rslegpqrqh rafvplsshe tgfiqyldsg
      601 iwhlafyndg kesevvsflt taiesvdncp sncygngdcv sgtchcflgf lgpdcgrasc
      661 pvlcsgngqy mkgrclchsg wkgaecdvpt nqcidiscnn hgtcimgtci cnpgykgesc
      721 eevdcmdptc sgrgvcvrge chcsvgwggt ncetpratcl dqcsghgtfl pdtglcscdp
      781 nwtghdcsie icaadcgghg icvggtcrce egwmgtacdq rachprcneh gtcrdgkcec
      841 spgwngehct iegcpglcng ngrctldmng whcvcqlgwr gagcdtsmet acgdgkdndg
      901 dglvdcmdpd cclqplchvn alclgspdpl diiqetqapi sqqslhsfyd rikfligkds
      961 thvipgdnpf egghacvirg qvmtadgtpl vgvnisfvnn plfgytisrq dgsfdlvtig
     1021 gisiilhfer apfitqehtl wlpwdrffvm etivmrheen eipscdlsnf arpnpvvsps
     1081 pltsfasscs ekgpivpeiq alqeeinisg skikvsylss rtagyksvlr ismthptipf
     1141 nlmkvhlmva vegrlfrkwf aaapdlsyyf iwdktdvysq kvyglseafv svgyeyescp
     1201 dlilwekrta vlqgyeidas klggwsldkh halniqsgil hkgngenqfi sqqppvigsi
     1261 mgngrrrsis cpscngladg nkllapvalt cgsdgslyvg dfnyirrifp sgnvtnilel
     1321 rnkdfrhshs pahkyylttd pitgsvylsd tnsrriykik sttsvkdivk nsevlagtgd
     1381 qclpfddtrc gdggkgtdat ltnprgitvd kfgliyfvdg tmirridqng iistvlgsnd
     1441 ltsarplscd svmdisqvrl ewptdlavnp mdnslyvldn nvvlqisenh qvrivagrpm
     1501 hcqvpgmdhf llskvaihat lesatalavs hngvlyiaet dekkinrirq vttngeislv
     1561 agapsscdck ndancdcfsg ddgyakdakl napsslavca dgelyvadlg nirirfirkn
     1621 kpflnmqnly elsspidqel ylfdtsgkhl ytqslttgdy lynftysgdg ditlitdnng
     1681 nlvnirrdst gmplwlvvpd gqvywvtmgt nsalksvttq ghevammtyh gssgllatks
     1741 nengwttfye ydgfgrltnv tfptgqvssf rsdtdssvhv qvetsskddv tittnlsasg
     1801 afytllqdqv rnsyyigadg slrlilangm evalqtephl lagtvnptvg krnvtlpidn
     1861 glnlvewrqr keqargqvtv fgrrlrvhnr nllsldfdrv trtekiyddh rkftlrilyd
     1921 qagrpslwsp ssrlngvnvt yspgghiagi qrgtmserme ydqsgritsr ifadgkswsy
     1981 tyleksmvll lhsqrqyife fdkndrlssv tmpnvarqtl etirsigyyr niyrppegna
     2041 sviqdftede qllhtlylgt grrviykygk lsklaemlyd ttkisftyde tagmlktinl
     2101 qnegftctir yrqigplidr qifrfteegm vnarfdynyd nsfrvtsmqa vinetplpid
     2161 lyryddvsgk teqfgkfgvi yydinqiitt avmthtkhfd aygrmkevqy eifrslmywm
     2221 tvqydnmgrv vkkelkvgpy anttrysyey dadgqlqtvs indkplwrys ydlngnlhll
     2281 spgnsarltp lrydlrdrit rlgdvqykmd edgflkqrgn difeynsagl likaynkasg
     2341 wsvkyrydgl grrvssktsh ghhlqffyad ltnptkvthl ynhssseits lyydlqghlf
     2401 amelssgdef yiacdnigtp lavfsgtglm ikqilytayg eiymdtnpnf qiiigyhggl
     2461 ydpftklihm grrdydvlag rwtspdhdmw khlssnnimp fnlymfknnn pisnsqdikc
     2521 ymtdvnswll tfgfqlhnvi pgypkpdtda mepsyeliht qmktqewdns ksilgvqcev
     2581 qkqlkafvtl erfeqiysss iagcrqvrkn knfasggsif gkgvkfamkd grvttdiisv
     2641 anedgrriaa ilnnahylen lhftidgvdt hyfikqgpse gdlsilglsg grrtlengvn
     2701 vtvsqintvl ggrtrrytdi qlqygalcln trygttldee karvlelarq ravtqawsre
     2761 qqrlrdgeeg irswtegekq qvlntgrvqg ydgyfvisve qypelsdsan nihfmrqsem
     2821 grr
//
LOCUS       XP_053922483            2823 aa            linear   VRT 09-MAR-2023
DEFINITION  teneurin-4 isoform X1 [Cuculus canorus].
ACCESSION   XP_053922483
VERSION     XP_053922483.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066508.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2823
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2823
                     /product="teneurin-4 isoform X1"
                     /calculated_mol_wt=313706
     Region          11..403
                     /region_name="Ten_N"
                     /note="Teneurin Intracellular Region; pfam06484"
                     /db_xref="CDD:461932"
     Region          684..883
                     /region_name="DUF5885"
                     /note="Family of unknown function (DUF5885); pfam19232"
                     /db_xref="CDD:437064"
     Region          1276..1617
                     /region_name="NHL"
                     /note="NHL repeat unit of beta-propeller proteins;
                     cl18310"
                     /db_xref="CDD:302697"
     Region          1286..1325
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1337..1380
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1404..1442
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1460..1499
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1523..1556
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1591..1617
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1650..2515
                     /region_name="RhsA"
                     /note="Uncharacterized conserved protein RhaS, contains 28
                     RHS repeats [General function prediction only]; COG3209"
                     /db_xref="CDD:442442"
     Region          2739..2816
                     /region_name="Tox-GHH"
                     /note="GHH signature containing HNH/Endo VII superfamily
                     nuclease toxin; pfam15636"
                     /db_xref="CDD:464783"
     CDS             1..2823
                     /gene="TENM4"
                     /coded_by="XM_054066508.1:184..8655"
                     /db_xref="GeneID:104064148"
ORIGIN      
        1 mdvkerkpyr sltrrrdter rytsssaese dskvpqksys ssetlkaydq dsrltygnrv
       61 kdmvhqeade fcraganfsl relgledvtp thgtlyrtdi glphcsysis agsdadtead
      121 vvmspehpvr lwgrntksgr ssclssrans nltltdtehe ntetgpplrg ssasssppsp
      181 ppsppanpga gralgsgaap agsdseeefv pnsflvksgs gnlcvasndh ppnlqnhsrl
      241 rtppppisha htpnqhhaas inslnrgnft prsnpspapt dhslsgeqpa stqepahaqd
      301 nwllnsnipl etrniakqtf letlqdnlie mdiltssrhd gayndghflf kpggtsplfc
      361 ttspgyplts stvysppprp lprstfsrpa fnlkkpykyc nwkcaalsai visvtlvill
      421 ayfiamhlfg lnwhlqpmeg qmyeitedta sswpvptdvs lypsggtgle lpdrkgkgts
      481 egkpssffpd dsfidsgeid vgrratqkip pgifwrsqvf idhpvhlkfn vslgkaalvg
      541 iygrkglpps htqfdfvell dgrrllaqea rslegpqrqh rafvplsshe tgfiqyldsg
      601 iwhlafyndg kesevvsflt taiesvdncp sncygngdcv sgtchcflgf lgpdcgrasc
      661 pvlcsgngqy mkgrclchsg wkgaecdvpt nqcidiscnn hgtcimgtci cnpgykgesc
      721 eevdcmdptc sgrgvcvrge chcsvgwggt ncetpratcl dqcsghgtfl pdtglcscdp
      781 nwtghdcsie icaadcgghg icvggtcrce egwmgtacdq rachprcneh gtcrdgkcec
      841 spgwngehct iegcpglcng ngrctldmng whcvcqlgwr gagcdtsmet acgdgkdndg
      901 dglvdcmdpd cclqplchvn alclgspdpl diiqetqapi sqqslhsfyd rikfligkds
      961 thvipgdnpf egghacvirg qvmtadgtpl vgvnisfvnn plfgytisrq dgsfdlvtig
     1021 gisiilhfer apfitqehtl wlpwdrffvm etivmrheen eipscdlsnf arpnpvvsps
     1081 pltsfasscs ekgpivpeiq alqeeinisg skikvsylss rtagyksvlr ismthptipf
     1141 nlmkvhlmva vegrlfrkwf aaapdlsyyf iwdktdvysq kvyglseafv svgyeyescp
     1201 dlilwekrta vlqgyeidas klggwsldkh halniqsgil hkgngenqfi sqqppvigsi
     1261 mgngrrrsis cpscngladg nkllapvalt cgsdgslyvg dfnyirrifp sgnvtnilel
     1321 rnkdfrhshs pahkyylttd pitgsvylsd tnsrriykik sttsvkdivk nsevlagtgd
     1381 qclpfddtrc gdggkgtdat ltnprgitvd kfgliyfvdg tmirridqng iistvlgsnd
     1441 ltsarplscd svmdisqvrl ewptdlavnp mdnslyvldn nvvlqisenh qvrivagrpm
     1501 hcqvpgmdhf llskvaihat lesatalavs hngvlyiaet dekkinrirq vttngeislv
     1561 agapsscdck ndancdcfsg ddgyakdakl napsslavca dgelyvadlg nirirfirkn
     1621 kpflnmqnly elsspidqel ylfdtsgkhl ytqslttgdy lynftysgdg ditlitdnng
     1681 nlvnirrdst gmplwlvvpd gqvywvtmgt nsalksvttq ghevammtyh gssgllatks
     1741 nengwttfye ydgfgrltnv tfptgqvssf rsdtdssvhv qvetsskddv tittnlsasg
     1801 afytllqdqv rnsyyigadg slrlilangm evalqtephl lagtvnptvg krnvtlpidn
     1861 glnlvewrqr keqargqvtv fgrrlrvhnr nllsldfdrv trtekiyddh rkftlrilyd
     1921 qagrpslwsp ssrlngvnvt yspgghiagi qrgtmserme ydqsgritsr ifadgkswsy
     1981 tyleksmvll lhsqrqyife fdkndrlssv tmpnvarqtl etirsigyyr niyrppegna
     2041 sviqdftede qllhtlylgt grrviykygk lsklaemlyd ttkisftyde tagmlktinl
     2101 qnegftctir yrqigplidr qifrfteegm vnarfdynyd nsfrvtsmqa vinetplpid
     2161 lyryddvsgk teqfgkfgvi yydinqiitt avmthtkhfd aygrmkevqy eifrslmywm
     2221 tvqydnmgrv vkkelkvgpy anttrysyey dadgqlqtvs indkplwrys ydlngnlhll
     2281 spgnsarltp lrydlrdrit rlgdvqykmd edgflkqrgn difeynsagl likaynkasg
     2341 wsvkyrydgl grrvssktsh ghhlqffyad ltnptkvthl ynhssseits lyydlqghlf
     2401 amelssgdef yiacdnigtp lavfsgtglm ikqilytayg eiymdtnpnf qiiigyhggl
     2461 ydpftklihm grrdydvlag rwtspdhdmw khlssnnimp fnlymfknnn pisnsqdikc
     2521 ymtdvnswll tfgfqlhnvi pgypkpdtda mepsyeliht qmktqewdns ksilgvqcev
     2581 qkqlkafvtl erfeqiysss iagcrqvrkn knfasggsif gkgvkfamkd grvttdiisv
     2641 anedgrriaa ilnnahylen lhftidgvdt hyfikqgpse gdlsilglsg grrtlengvn
     2701 vtvsqintvl ggrtrrytdi qlqygalcln trygttldee karvlelarq ravtqawsre
     2761 qqrlrdgeeg irswtegekq qvlntgrvqg ydgyfvisve qypelsdsan nihfmrqsem
     2821 grr
//
LOCUS       XP_053922489            2816 aa            linear   VRT 09-MAR-2023
DEFINITION  teneurin-4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053922489
VERSION     XP_053922489.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066514.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2816
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2816
                     /product="teneurin-4 isoform X2"
                     /calculated_mol_wt=312752
     Region          11..403
                     /region_name="Ten_N"
                     /note="Teneurin Intracellular Region; pfam06484"
                     /db_xref="CDD:461932"
     Region          684..883
                     /region_name="DUF5885"
                     /note="Family of unknown function (DUF5885); pfam19232"
                     /db_xref="CDD:437064"
     Region          1276..1610
                     /region_name="NHL"
                     /note="NHL repeat unit of beta-propeller proteins;
                     cl18310"
                     /db_xref="CDD:302697"
     Region          1324..1373
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1397..1435
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1453..1492
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1516..1549
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1584..1610
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1643..2508
                     /region_name="RhsA"
                     /note="Uncharacterized conserved protein RhaS, contains 28
                     RHS repeats [General function prediction only]; COG3209"
                     /db_xref="CDD:442442"
     Region          2732..2809
                     /region_name="Tox-GHH"
                     /note="GHH signature containing HNH/Endo VII superfamily
                     nuclease toxin; pfam15636"
                     /db_xref="CDD:464783"
     CDS             1..2816
                     /gene="TENM4"
                     /coded_by="XM_054066514.1:396..8846"
                     /db_xref="GeneID:104064148"
ORIGIN      
        1 mdvkerkpyr sltrrrdter rytsssaese dskvpqksys ssetlkaydq dsrltygnrv
       61 kdmvhqeade fcraganfsl relgledvtp thgtlyrtdi glphcsysis agsdadtead
      121 vvmspehpvr lwgrntksgr ssclssrans nltltdtehe ntetgpplrg ssasssppsp
      181 ppsppanpga gralgsgaap agsdseeefv pnsflvksgs gnlcvasndh ppnlqnhsrl
      241 rtppppisha htpnqhhaas inslnrgnft prsnpspapt dhslsgeqpa stqepahaqd
      301 nwllnsnipl etrniakqtf letlqdnlie mdiltssrhd gayndghflf kpggtsplfc
      361 ttspgyplts stvysppprp lprstfsrpa fnlkkpykyc nwkcaalsai visvtlvill
      421 ayfiamhlfg lnwhlqpmeg qmyeitedta sswpvptdvs lypsggtgle lpdrkgkgts
      481 egkpssffpd dsfidsgeid vgrratqkip pgifwrsqvf idhpvhlkfn vslgkaalvg
      541 iygrkglpps htqfdfvell dgrrllaqea rslegpqrqh rafvplsshe tgfiqyldsg
      601 iwhlafyndg kesevvsflt taiesvdncp sncygngdcv sgtchcflgf lgpdcgrasc
      661 pvlcsgngqy mkgrclchsg wkgaecdvpt nqcidiscnn hgtcimgtci cnpgykgesc
      721 eevdcmdptc sgrgvcvrge chcsvgwggt ncetpratcl dqcsghgtfl pdtglcscdp
      781 nwtghdcsie icaadcgghg icvggtcrce egwmgtacdq rachprcneh gtcrdgkcec
      841 spgwngehct iegcpglcng ngrctldmng whcvcqlgwr gagcdtsmet acgdgkdndg
      901 dglvdcmdpd cclqplchvn alclgspdpl diiqetqapi sqqslhsfyd rikfligkds
      961 thvipgdnpf egghacvirg qvmtadgtpl vgvnisfvnn plfgytisrq dgsfdlvtig
     1021 gisiilhfer apfitqehtl wlpwdrffvm etivmrheen eipscdlsnf arpnpvvsps
     1081 pltsfasscs ekgpivpeiq alqeeinisg skikvsylss rtagyksvlr ismthptipf
     1141 nlmkvhlmva vegrlfrkwf aaapdlsyyf iwdktdvysq kvyglseafv svgyeyescp
     1201 dlilwekrta vlqgyeidas klggwsldkh halniqsgil hkgngenqfi sqqppvigsi
     1261 mgngrrrsis cpscngladg nkllapvalt cgsdgslyvg dfnyirrifp sgnvtnilel
     1321 shspahkyyl ttdpitgsvy lsdtnsrriy kiksttsvkd ivknsevlag tgdqclpfdd
     1381 trcgdggkgt datltnprgi tvdkfgliyf vdgtmirrid qngiistvlg sndltsarpl
     1441 scdsvmdisq vrlewptdla vnpmdnslyv ldnnvvlqis enhqvrivag rpmhcqvpgm
     1501 dhfllskvai hatlesatal avshngvlyi aetdekkinr irqvttngei slvagapssc
     1561 dckndancdc fsgddgyakd aklnapssla vcadgelyva dlgnirirfi rknkpflnmq
     1621 nlyelsspid qelylfdtsg khlytqsltt gdylynftys gdgditlitd nngnlvnirr
     1681 dstgmplwlv vpdgqvywvt mgtnsalksv ttqghevamm tyhgssglla tksnengwtt
     1741 fyeydgfgrl tnvtfptgqv ssfrsdtdss vhvqvetssk ddvtittnls asgafytllq
     1801 dqvrnsyyig adgslrlila ngmevalqte phllagtvnp tvgkrnvtlp idnglnlvew
     1861 rqrkeqargq vtvfgrrlrv hnrnllsldf drvtrtekiy ddhrkftlri lydqagrpsl
     1921 wspssrlngv nvtyspgghi agiqrgtmse rmeydqsgri tsrifadgks wsytyleksm
     1981 vlllhsqrqy ifefdkndrl ssvtmpnvar qtletirsig yyrniyrppe gnasviqdft
     2041 edeqllhtly lgtgrrviyk ygklsklaem lydttkisft ydetagmlkt inlqnegftc
     2101 tiryrqigpl idrqifrfte egmvnarfdy nydnsfrvts mqavinetpl pidlyryddv
     2161 sgkteqfgkf gviyydinqi ittavmthtk hfdaygrmke vqyeifrslm ywmtvqydnm
     2221 grvvkkelkv gpyanttrys yeydadgqlq tvsindkplw rysydlngnl hllspgnsar
     2281 ltplrydlrd ritrlgdvqy kmdedgflkq rgndifeyns agllikaynk asgwsvkyry
     2341 dglgrrvssk tshghhlqff yadltnptkv thlynhssse itslyydlqg hlfamelssg
     2401 defyiacdni gtplavfsgt glmikqilyt aygeiymdtn pnfqiiigyh gglydpftkl
     2461 ihmgrrdydv lagrwtspdh dmwkhlssnn impfnlymfk nnnpisnsqd ikcymtdvns
     2521 wlltfgfqlh nvipgypkpd tdamepsyel ihtqmktqew dnsksilgvq cevqkqlkaf
     2581 vtlerfeqiy sssiagcrqv rknknfasgg sifgkgvkfa mkdgrvttdi isvanedgrr
     2641 iaailnnahy lenlhftidg vdthyfikqg psegdlsilg lsggrrtlen gvnvtvsqin
     2701 tvlggrtrry tdiqlqygal clntrygttl deekarvlel arqravtqaw sreqqrlrdg
     2761 eegirswteg ekqqvlntgr vqgydgyfvi sveqypelsd sannihfmrq semgrr
//
LOCUS       XP_053922490            2790 aa            linear   VRT 09-MAR-2023
DEFINITION  teneurin-4 isoform X3 [Cuculus canorus].
ACCESSION   XP_053922490
VERSION     XP_053922490.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066515.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2790
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2790
                     /product="teneurin-4 isoform X3"
                     /calculated_mol_wt=310000
     Region          11..370
                     /region_name="Ten_N"
                     /note="Teneurin Intracellular Region; pfam06484"
                     /db_xref="CDD:461932"
     Region          651..850
                     /region_name="DUF5885"
                     /note="Family of unknown function (DUF5885); pfam19232"
                     /db_xref="CDD:437064"
     Region          1243..1584
                     /region_name="NHL"
                     /note="NHL repeat unit of beta-propeller proteins;
                     cl18310"
                     /db_xref="CDD:302697"
     Region          1253..1292
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1304..1347
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1371..1409
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1427..1466
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1490..1523
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1558..1584
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1617..2482
                     /region_name="RhsA"
                     /note="Uncharacterized conserved protein RhaS, contains 28
                     RHS repeats [General function prediction only]; COG3209"
                     /db_xref="CDD:442442"
     Region          2706..2783
                     /region_name="Tox-GHH"
                     /note="GHH signature containing HNH/Endo VII superfamily
                     nuclease toxin; pfam15636"
                     /db_xref="CDD:464783"
     CDS             1..2790
                     /gene="TENM4"
                     /coded_by="XM_054066515.1:397..8769"
                     /db_xref="GeneID:104064148"
ORIGIN      
        1 mdvkerkpyr sltrrrdter rytsssaese dskvpqksys ssetlkaydq dsrltygnrv
       61 kdmvhqeade fcraganfsl relgledvtp thgtlyrtdi glphcsysis agsdadtead
      121 vvmspehpvr lwgrntksgr ssclssrans nltltdtehe ntetgpplrg ssasssppsp
      181 ppsppanpga gralgsgaap agsdseeefv pnsflvksgs gnlcvasndh ppnlqnhsrl
      241 rtppppisha htpnqhhaas inslnrgnft prsnpspapt dhslsgeqpa stqepahaqd
      301 nwllnsnipl etrhflfkpg gtsplfctts pgypltsstv ysppprplpr stfsrpafnl
      361 kkpykycnwk caalsaivis vtlvillayf iamhlfglnw hlqpmegqmy eitedtassw
      421 pvptdvslyp sggtglelpd rkgkgtsegk pssffpddsf idsgeidvgr ratqkippgi
      481 fwrsqvfidh pvhlkfnvsl gkaalvgiyg rkglppshtq fdfvelldgr rllaqearsl
      541 egpqrqhraf vplsshetgf iqyldsgiwh lafyndgkes evvsflttai esvdncpsnc
      601 ygngdcvsgt chcflgflgp dcgrascpvl csgngqymkg rclchsgwkg aecdvptnqc
      661 idiscnnhgt cimgtcicnp gykgesceev dcmdptcsgr gvcvrgechc svgwggtnce
      721 tpratcldqc sghgtflpdt glcscdpnwt ghdcsieica adcgghgicv ggtcrceegw
      781 mgtacdqrac hprcnehgtc rdgkcecspg wngehctieg cpglcngngr ctldmngwhc
      841 vcqlgwrgag cdtsmetacg dgkdndgdgl vdcmdpdccl qplchvnalc lgspdpldii
      901 qetqapisqq slhsfydrik fligkdsthv ipgdnpfegg hacvirgqvm tadgtplvgv
      961 nisfvnnplf gytisrqdgs fdlvtiggis iilhferapf itqehtlwlp wdrffvmeti
     1021 vmrheeneip scdlsnfarp npvvspsplt sfasscsekg pivpeiqalq eeinisgski
     1081 kvsylssrta gyksvlrism thptipfnlm kvhlmvaveg rlfrkwfaaa pdlsyyfiwd
     1141 ktdvysqkvy glseafvsvg yeyescpdli lwekrtavlq gyeidasklg gwsldkhhal
     1201 niqsgilhkg ngenqfisqq ppvigsimgn grrrsiscps cngladgnkl lapvaltcgs
     1261 dgslyvgdfn yirrifpsgn vtnilelrnk dfrhshspah kyylttdpit gsvylsdtns
     1321 rriykikstt svkdivknse vlagtgdqcl pfddtrcgdg gkgtdatltn prgitvdkfg
     1381 liyfvdgtmi rridqngiis tvlgsndlts arplscdsvm disqvrlewp tdlavnpmdn
     1441 slyvldnnvv lqisenhqvr ivagrpmhcq vpgmdhflls kvaihatles atalavshng
     1501 vlyiaetdek kinrirqvtt ngeislvaga psscdcknda ncdcfsgddg yakdaklnap
     1561 sslavcadge lyvadlgnir irfirknkpf lnmqnlyels spidqelylf dtsgkhlytq
     1621 slttgdylyn ftysgdgdit litdnngnlv nirrdstgmp lwlvvpdgqv ywvtmgtnsa
     1681 lksvttqghe vammtyhgss gllatksnen gwttfyeydg fgrltnvtfp tgqvssfrsd
     1741 tdssvhvqve tsskddvtit tnlsasgafy tllqdqvrns yyigadgslr lilangmeva
     1801 lqtephllag tvnptvgkrn vtlpidngln lvewrqrkeq argqvtvfgr rlrvhnrnll
     1861 sldfdrvtrt ekiyddhrkf tlrilydqag rpslwspssr lngvnvtysp gghiagiqrg
     1921 tmsermeydq sgritsrifa dgkswsytyl eksmvlllhs qrqyifefdk ndrlssvtmp
     1981 nvarqtleti rsigyyrniy rppegnasvi qdftedeqll htlylgtgrr viykygklsk
     2041 laemlydttk isftydetag mlktinlqne gftctiryrq igplidrqif rfteegmvna
     2101 rfdynydnsf rvtsmqavin etplpidlyr yddvsgkteq fgkfgviyyd inqiittavm
     2161 thtkhfdayg rmkevqyeif rslmywmtvq ydnmgrvvkk elkvgpyant trysyeydad
     2221 gqlqtvsind kplwrysydl ngnlhllspg nsarltplry dlrdritrlg dvqykmdedg
     2281 flkqrgndif eynsagllik aynkasgwsv kyrydglgrr vssktshghh lqffyadltn
     2341 ptkvthlynh ssseitslyy dlqghlfame lssgdefyia cdnigtplav fsgtglmikq
     2401 ilytaygeiy mdtnpnfqii igyhgglydp ftklihmgrr dydvlagrwt spdhdmwkhl
     2461 ssnnimpfnl ymfknnnpis nsqdikcymt dvnswlltfg fqlhnvipgy pkpdtdamep
     2521 syelihtqmk tqewdnsksi lgvqcevqkq lkafvtlerf eqiysssiag crqvrknknf
     2581 asggsifgkg vkfamkdgrv ttdiisvane dgrriaailn nahylenlhf tidgvdthyf
     2641 ikqgpsegdl silglsggrr tlengvnvtv sqintvlggr trrytdiqlq ygalclntry
     2701 gttldeekar vlelarqrav tqawsreqqr lrdgeegirs wtegekqqvl ntgrvqgydg
     2761 yfvisveqyp elsdsannih fmrqsemgrr
//
LOCUS       XP_053922499            2766 aa            linear   VRT 09-MAR-2023
DEFINITION  teneurin-4 isoform X4 [Cuculus canorus].
ACCESSION   XP_053922499
VERSION     XP_053922499.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066524.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2766
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2766
                     /product="teneurin-4 isoform X4"
                     /calculated_mol_wt=307460
     Region          11..403
                     /region_name="Ten_N"
                     /note="Teneurin Intracellular Region; pfam06484"
                     /db_xref="CDD:461932"
     Region          627..826
                     /region_name="DUF5885"
                     /note="Family of unknown function (DUF5885); pfam19232"
                     /db_xref="CDD:437064"
     Region          1219..1560
                     /region_name="NHL"
                     /note="NHL repeat unit of beta-propeller proteins;
                     cl18310"
                     /db_xref="CDD:302697"
     Region          1229..1268
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1280..1323
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1347..1385
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1403..1442
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1466..1499
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1534..1560
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1593..2458
                     /region_name="RhsA"
                     /note="Uncharacterized conserved protein RhaS, contains 28
                     RHS repeats [General function prediction only]; COG3209"
                     /db_xref="CDD:442442"
     Region          2682..2759
                     /region_name="Tox-GHH"
                     /note="GHH signature containing HNH/Endo VII superfamily
                     nuclease toxin; pfam15636"
                     /db_xref="CDD:464783"
     CDS             1..2766
                     /gene="TENM4"
                     /coded_by="XM_054066524.1:396..8696"
                     /db_xref="GeneID:104064148"
ORIGIN      
        1 mdvkerkpyr sltrrrdter rytsssaese dskvpqksys ssetlkaydq dsrltygnrv
       61 kdmvhqeade fcraganfsl relgledvtp thgtlyrtdi glphcsysis agsdadtead
      121 vvmspehpvr lwgrntksgr ssclssrans nltltdtehe ntetgpplrg ssasssppsp
      181 ppsppanpga gralgsgaap agsdseeefv pnsflvksgs gnlcvasndh ppnlqnhsrl
      241 rtppppisha htpnqhhaas inslnrgnft prsnpspapt dhslsgeqpa stqepahaqd
      301 nwllnsnipl etrniakqtf letlqdnlie mdiltssrhd gayndghflf kpggtsplfc
      361 ttspgyplts stvysppprp lprstfsrpa fnlkkpykyc nwkcaalsai visvtlvill
      421 ayfigkpssf fpddsfidsg eidvgrratq kippgifwrs qvfidhpvhl kfnvslgkaa
      481 lvgiygrkgl ppshtqfdfv elldgrrlla qearslegpq rqhrafvpls shetgfiqyl
      541 dsgiwhlafy ndgkesevvs flttaiesvd ncpsncygng dcvsgtchcf lgflgpdcgr
      601 ascpvlcsgn gqymkgrclc hsgwkgaecd vptnqcidis cnnhgtcimg tcicnpgykg
      661 esceevdcmd ptcsgrgvcv rgechcsvgw ggtncetpra tcldqcsghg tflpdtglcs
      721 cdpnwtghdc sieicaadcg ghgicvggtc rceegwmgta cdqrachprc nehgtcrdgk
      781 cecspgwnge hctiegcpgl cngngrctld mngwhcvcql gwrgagcdts metacgdgkd
      841 ndgdglvdcm dpdcclqplc hvnalclgsp dpldiiqetq apisqqslhs fydrikflig
      901 kdsthvipgd npfegghacv irgqvmtadg tplvgvnisf vnnplfgyti srqdgsfdlv
      961 tiggisiilh ferapfitqe htlwlpwdrf fvmetivmrh eeneipscdl snfarpnpvv
     1021 spspltsfas scsekgpivp eiqalqeein isgskikvsy lssrtagyks vlrismthpt
     1081 ipfnlmkvhl mvavegrlfr kwfaaapdls yyfiwdktdv ysqkvyglse afvsvgyeye
     1141 scpdlilwek rtavlqgyei dasklggwsl dkhhalniqs gilhkgngen qfisqqppvi
     1201 gsimgngrrr siscpscngl adgnkllapv altcgsdgsl yvgdfnyirr ifpsgnvtni
     1261 lelrnkdfrh shspahkyyl ttdpitgsvy lsdtnsrriy kiksttsvkd ivknsevlag
     1321 tgdqclpfdd trcgdggkgt datltnprgi tvdkfgliyf vdgtmirrid qngiistvlg
     1381 sndltsarpl scdsvmdisq vrlewptdla vnpmdnslyv ldnnvvlqis enhqvrivag
     1441 rpmhcqvpgm dhfllskvai hatlesatal avshngvlyi aetdekkinr irqvttngei
     1501 slvagapssc dckndancdc fsgddgyakd aklnapssla vcadgelyva dlgnirirfi
     1561 rknkpflnmq nlyelsspid qelylfdtsg khlytqsltt gdylynftys gdgditlitd
     1621 nngnlvnirr dstgmplwlv vpdgqvywvt mgtnsalksv ttqghevamm tyhgssglla
     1681 tksnengwtt fyeydgfgrl tnvtfptgqv ssfrsdtdss vhvqvetssk ddvtittnls
     1741 asgafytllq dqvrnsyyig adgslrlila ngmevalqte phllagtvnp tvgkrnvtlp
     1801 idnglnlvew rqrkeqargq vtvfgrrlrv hnrnllsldf drvtrtekiy ddhrkftlri
     1861 lydqagrpsl wspssrlngv nvtyspgghi agiqrgtmse rmeydqsgri tsrifadgks
     1921 wsytyleksm vlllhsqrqy ifefdkndrl ssvtmpnvar qtletirsig yyrniyrppe
     1981 gnasviqdft edeqllhtly lgtgrrviyk ygklsklaem lydttkisft ydetagmlkt
     2041 inlqnegftc tiryrqigpl idrqifrfte egmvnarfdy nydnsfrvts mqavinetpl
     2101 pidlyryddv sgkteqfgkf gviyydinqi ittavmthtk hfdaygrmke vqyeifrslm
     2161 ywmtvqydnm grvvkkelkv gpyanttrys yeydadgqlq tvsindkplw rysydlngnl
     2221 hllspgnsar ltplrydlrd ritrlgdvqy kmdedgflkq rgndifeyns agllikaynk
     2281 asgwsvkyry dglgrrvssk tshghhlqff yadltnptkv thlynhssse itslyydlqg
     2341 hlfamelssg defyiacdni gtplavfsgt glmikqilyt aygeiymdtn pnfqiiigyh
     2401 gglydpftkl ihmgrrdydv lagrwtspdh dmwkhlssnn impfnlymfk nnnpisnsqd
     2461 ikcymtdvns wlltfgfqlh nvipgypkpd tdamepsyel ihtqmktqew dnsksilgvq
     2521 cevqkqlkaf vtlerfeqiy sssiagcrqv rknknfasgg sifgkgvkfa mkdgrvttdi
     2581 isvanedgrr iaailnnahy lenlhftidg vdthyfikqg psegdlsilg lsggrrtlen
     2641 gvnvtvsqin tvlggrtrry tdiqlqygal clntrygttl deekarvlel arqravtqaw
     2701 sreqqrlrdg eegirswteg ekqqvlntgr vqgydgyfvi sveqypelsd sannihfmrq
     2761 semgrr
//
LOCUS       XP_053922510            2759 aa            linear   VRT 09-MAR-2023
DEFINITION  teneurin-4 isoform X5 [Cuculus canorus].
ACCESSION   XP_053922510
VERSION     XP_053922510.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066535.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2759
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2759
                     /product="teneurin-4 isoform X5"
                     /calculated_mol_wt=307693
     Region          11..339
                     /region_name="Ten_N"
                     /note="Teneurin Intracellular Region; pfam06484"
                     /db_xref="CDD:461932"
     Region          620..819
                     /region_name="DUF5885"
                     /note="Family of unknown function (DUF5885); pfam19232"
                     /db_xref="CDD:437064"
     Region          1212..1553
                     /region_name="NHL"
                     /note="NHL repeat unit of beta-propeller proteins;
                     cl18310"
                     /db_xref="CDD:302697"
     Region          1222..1261
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1273..1316
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1340..1378
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1396..1435
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1459..1492
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1527..1553
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1586..2451
                     /region_name="RhsA"
                     /note="Uncharacterized conserved protein RhaS, contains 28
                     RHS repeats [General function prediction only]; COG3209"
                     /db_xref="CDD:442442"
     Region          2675..2752
                     /region_name="Tox-GHH"
                     /note="GHH signature containing HNH/Endo VII superfamily
                     nuclease toxin; pfam15636"
                     /db_xref="CDD:464783"
     CDS             1..2759
                     /gene="TENM4"
                     /coded_by="XM_054066535.1:395..8674"
                     /db_xref="GeneID:104064148"
ORIGIN      
        1 mdvkerkpyr sltrrrdter rytsssaese dskvpqksys ssetlkaydq dsrltygnrv
       61 kdmvhqeade fcraganfsl relgledvtp thgtlyrtdi glphcsysis agsdadtead
      121 vvmspehpvr lwgrntksgr ssclssrans nltltdtehe ntetdhppnl qnhsrlrtpp
      181 ppishahtpn qhhaasinsl nrgnftprsn pspaptdhsl sgeqpastqe pahaqdnwll
      241 nsnipletrn iakqtfletl qdnliemdil tssrhdgayn dghflfkpgg tsplfcttsp
      301 gypltsstvy sppprplprs tfsrpafnlk kpykycnwkc aalsaivisv tlvillayfi
      361 amhlfglnwh lqpmegqmye itedtasswp vptdvslyps ggtglelpdr kgkgtsegkp
      421 ssffpddsfi dsgeidvgrr atqkippgif wrsqvfidhp vhlkfnvslg kaalvgiygr
      481 kglppshtqf dfvelldgrr llaqearsle gpqrqhrafv plsshetgfi qyldsgiwhl
      541 afyndgkese vvsflttaie svdncpsncy gngdcvsgtc hcflgflgpd cgrascpvlc
      601 sgngqymkgr clchsgwkga ecdvptnqci discnnhgtc imgtcicnpg ykgesceevd
      661 cmdptcsgrg vcvrgechcs vgwggtncet pratcldqcs ghgtflpdtg lcscdpnwtg
      721 hdcsieicaa dcgghgicvg gtcrceegwm gtacdqrach prcnehgtcr dgkcecspgw
      781 ngehctiegc pglcngngrc tldmngwhcv cqlgwrgagc dtsmetacgd gkdndgdglv
      841 dcmdpdcclq plchvnalcl gspdpldiiq etqapisqqs lhsfydrikf ligkdsthvi
      901 pgdnpfeggh acvirgqvmt adgtplvgvn isfvnnplfg ytisrqdgsf dlvtiggisi
      961 ilhferapfi tqehtlwlpw drffvmetiv mrheeneips cdlsnfarpn pvvspsplts
     1021 fasscsekgp ivpeiqalqe einisgskik vsylssrtag yksvlrismt hptipfnlmk
     1081 vhlmvavegr lfrkwfaaap dlsyyfiwdk tdvysqkvyg lseafvsvgy eyescpdlil
     1141 wekrtavlqg yeidasklgg wsldkhhaln iqsgilhkgn genqfisqqp pvigsimgng
     1201 rrrsiscpsc ngladgnkll apvaltcgsd gslyvgdfny irrifpsgnv tnilelrnkd
     1261 frhshspahk yylttdpitg svylsdtnsr riykikstts vkdivknsev lagtgdqclp
     1321 fddtrcgdgg kgtdatltnp rgitvdkfgl iyfvdgtmir ridqngiist vlgsndltsa
     1381 rplscdsvmd isqvrlewpt dlavnpmdns lyvldnnvvl qisenhqvri vagrpmhcqv
     1441 pgmdhfllsk vaihatlesa talavshngv lyiaetdekk inrirqvttn geislvagap
     1501 sscdckndan cdcfsgddgy akdaklnaps slavcadgel yvadlgniri rfirknkpfl
     1561 nmqnlyelss pidqelylfd tsgkhlytqs lttgdylynf tysgdgditl itdnngnlvn
     1621 irrdstgmpl wlvvpdgqvy wvtmgtnsal ksvttqghev ammtyhgssg llatksneng
     1681 wttfyeydgf grltnvtfpt gqvssfrsdt dssvhvqvet sskddvtitt nlsasgafyt
     1741 llqdqvrnsy yigadgslrl ilangmeval qtephllagt vnptvgkrnv tlpidnglnl
     1801 vewrqrkeqa rgqvtvfgrr lrvhnrnlls ldfdrvtrte kiyddhrkft lrilydqagr
     1861 pslwspssrl ngvnvtyspg ghiagiqrgt msermeydqs gritsrifad gkswsytyle
     1921 ksmvlllhsq rqyifefdkn drlssvtmpn varqtletir sigyyrniyr ppegnasviq
     1981 dftedeqllh tlylgtgrrv iykygklskl aemlydttki sftydetagm lktinlqneg
     2041 ftctiryrqi gplidrqifr fteegmvnar fdynydnsfr vtsmqavine tplpidlyry
     2101 ddvsgkteqf gkfgviyydi nqiittavmt htkhfdaygr mkevqyeifr slmywmtvqy
     2161 dnmgrvvkke lkvgpyantt rysyeydadg qlqtvsindk plwrysydln gnlhllspgn
     2221 sarltplryd lrdritrlgd vqykmdedgf lkqrgndife ynsagllika ynkasgwsvk
     2281 yrydglgrrv ssktshghhl qffyadltnp tkvthlynhs sseitslyyd lqghlfamel
     2341 ssgdefyiac dnigtplavf sgtglmikqi lytaygeiym dtnpnfqiii gyhgglydpf
     2401 tklihmgrrd ydvlagrwts pdhdmwkhls snnimpfnly mfknnnpisn sqdikcymtd
     2461 vnswlltfgf qlhnvipgyp kpdtdameps yelihtqmkt qewdnsksil gvqcevqkql
     2521 kafvtlerfe qiysssiagc rqvrknknfa sggsifgkgv kfamkdgrvt tdiisvaned
     2581 grriaailnn ahylenlhft idgvdthyfi kqgpsegdls ilglsggrrt lengvnvtvs
     2641 qintvlggrt rrytdiqlqy galclntryg ttldeekarv lelarqravt qawsreqqrl
     2701 rdgeegirsw tegekqqvln tgrvqgydgy fvisveqype lsdsannihf mrqsemgrr
//
LOCUS       XP_053922517            2726 aa            linear   VRT 09-MAR-2023
DEFINITION  teneurin-4 isoform X6 [Cuculus canorus].
ACCESSION   XP_053922517
VERSION     XP_053922517.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066542.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2726
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2726
                     /product="teneurin-4 isoform X6"
                     /calculated_mol_wt=303987
     Region          11..306
                     /region_name="Ten_N"
                     /note="Teneurin Intracellular Region; pfam06484"
                     /db_xref="CDD:461932"
     Region          587..786
                     /region_name="DUF5885"
                     /note="Family of unknown function (DUF5885); pfam19232"
                     /db_xref="CDD:437064"
     Region          1179..1520
                     /region_name="NHL"
                     /note="NHL repeat unit of beta-propeller proteins;
                     cl18310"
                     /db_xref="CDD:302697"
     Region          1189..1228
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1240..1283
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1307..1345
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1363..1402
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1426..1459
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1494..1520
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1553..2418
                     /region_name="RhsA"
                     /note="Uncharacterized conserved protein RhaS, contains 28
                     RHS repeats [General function prediction only]; COG3209"
                     /db_xref="CDD:442442"
     Region          2642..2719
                     /region_name="Tox-GHH"
                     /note="GHH signature containing HNH/Endo VII superfamily
                     nuclease toxin; pfam15636"
                     /db_xref="CDD:464783"
     CDS             1..2726
                     /gene="TENM4"
                     /coded_by="XM_054066542.1:394..8574"
                     /db_xref="GeneID:104064148"
ORIGIN      
        1 mdvkerkpyr sltrrrdter rytsssaese dskvpqksys ssetlkaydq dsrltygnrv
       61 kdmvhqeade fcraganfsl relgledvtp thgtlyrtdi glphcsysis agsdadtead
      121 vvmspehpvr lwgrntksgr ssclssrans nltltdtehe ntetdhppnl qnhsrlrtpp
      181 ppishahtpn qhhaasinsl nrgnftprsn pspaptdhsl sgeqpastqe pahaqdnwll
      241 nsnipletrh flfkpggtsp lfcttspgyp ltsstvyspp prplprstfs rpafnlkkpy
      301 kycnwkcaal saivisvtlv illayfiamh lfglnwhlqp megqmyeite dtasswpvpt
      361 dvslypsggt glelpdrkgk gtsegkpssf fpddsfidsg eidvgrratq kippgifwrs
      421 qvfidhpvhl kfnvslgkaa lvgiygrkgl ppshtqfdfv elldgrrlla qearslegpq
      481 rqhrafvpls shetgfiqyl dsgiwhlafy ndgkesevvs flttaiesvd ncpsncygng
      541 dcvsgtchcf lgflgpdcgr ascpvlcsgn gqymkgrclc hsgwkgaecd vptnqcidis
      601 cnnhgtcimg tcicnpgykg esceevdcmd ptcsgrgvcv rgechcsvgw ggtncetpra
      661 tcldqcsghg tflpdtglcs cdpnwtghdc sieicaadcg ghgicvggtc rceegwmgta
      721 cdqrachprc nehgtcrdgk cecspgwnge hctiegcpgl cngngrctld mngwhcvcql
      781 gwrgagcdts metacgdgkd ndgdglvdcm dpdcclqplc hvnalclgsp dpldiiqetq
      841 apisqqslhs fydrikflig kdsthvipgd npfegghacv irgqvmtadg tplvgvnisf
      901 vnnplfgyti srqdgsfdlv tiggisiilh ferapfitqe htlwlpwdrf fvmetivmrh
      961 eeneipscdl snfarpnpvv spspltsfas scsekgpivp eiqalqeein isgskikvsy
     1021 lssrtagyks vlrismthpt ipfnlmkvhl mvavegrlfr kwfaaapdls yyfiwdktdv
     1081 ysqkvyglse afvsvgyeye scpdlilwek rtavlqgyei dasklggwsl dkhhalniqs
     1141 gilhkgngen qfisqqppvi gsimgngrrr siscpscngl adgnkllapv altcgsdgsl
     1201 yvgdfnyirr ifpsgnvtni lelrnkdfrh shspahkyyl ttdpitgsvy lsdtnsrriy
     1261 kiksttsvkd ivknsevlag tgdqclpfdd trcgdggkgt datltnprgi tvdkfgliyf
     1321 vdgtmirrid qngiistvlg sndltsarpl scdsvmdisq vrlewptdla vnpmdnslyv
     1381 ldnnvvlqis enhqvrivag rpmhcqvpgm dhfllskvai hatlesatal avshngvlyi
     1441 aetdekkinr irqvttngei slvagapssc dckndancdc fsgddgyakd aklnapssla
     1501 vcadgelyva dlgnirirfi rknkpflnmq nlyelsspid qelylfdtsg khlytqsltt
     1561 gdylynftys gdgditlitd nngnlvnirr dstgmplwlv vpdgqvywvt mgtnsalksv
     1621 ttqghevamm tyhgssglla tksnengwtt fyeydgfgrl tnvtfptgqv ssfrsdtdss
     1681 vhvqvetssk ddvtittnls asgafytllq dqvrnsyyig adgslrlila ngmevalqte
     1741 phllagtvnp tvgkrnvtlp idnglnlvew rqrkeqargq vtvfgrrlrv hnrnllsldf
     1801 drvtrtekiy ddhrkftlri lydqagrpsl wspssrlngv nvtyspgghi agiqrgtmse
     1861 rmeydqsgri tsrifadgks wsytyleksm vlllhsqrqy ifefdkndrl ssvtmpnvar
     1921 qtletirsig yyrniyrppe gnasviqdft edeqllhtly lgtgrrviyk ygklsklaem
     1981 lydttkisft ydetagmlkt inlqnegftc tiryrqigpl idrqifrfte egmvnarfdy
     2041 nydnsfrvts mqavinetpl pidlyryddv sgkteqfgkf gviyydinqi ittavmthtk
     2101 hfdaygrmke vqyeifrslm ywmtvqydnm grvvkkelkv gpyanttrys yeydadgqlq
     2161 tvsindkplw rysydlngnl hllspgnsar ltplrydlrd ritrlgdvqy kmdedgflkq
     2221 rgndifeyns agllikaynk asgwsvkyry dglgrrvssk tshghhlqff yadltnptkv
     2281 thlynhssse itslyydlqg hlfamelssg defyiacdni gtplavfsgt glmikqilyt
     2341 aygeiymdtn pnfqiiigyh gglydpftkl ihmgrrdydv lagrwtspdh dmwkhlssnn
     2401 impfnlymfk nnnpisnsqd ikcymtdvns wlltfgfqlh nvipgypkpd tdamepsyel
     2461 ihtqmktqew dnsksilgvq cevqkqlkaf vtlerfeqiy sssiagcrqv rknknfasgg
     2521 sifgkgvkfa mkdgrvttdi isvanedgrr iaailnnahy lenlhftidg vdthyfikqg
     2581 psegdlsilg lsggrrtlen gvnvtvsqin tvlggrtrry tdiqlqygal clntrygttl
     2641 deekarvlel arqravtqaw sreqqrlrdg eegirswteg ekqqvlntgr vqgydgyfvi
     2701 sveqypelsd sannihfmrq semgrr
//
LOCUS       XP_053922525            2719 aa            linear   VRT 09-MAR-2023
DEFINITION  teneurin-4 isoform X7 [Cuculus canorus].
ACCESSION   XP_053922525
VERSION     XP_053922525.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066550.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2719
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2719
                     /product="teneurin-4 isoform X7"
                     /calculated_mol_wt=303033
     Region          11..306
                     /region_name="Ten_N"
                     /note="Teneurin Intracellular Region; pfam06484"
                     /db_xref="CDD:461932"
     Region          587..786
                     /region_name="DUF5885"
                     /note="Family of unknown function (DUF5885); pfam19232"
                     /db_xref="CDD:437064"
     Region          1179..1513
                     /region_name="NHL"
                     /note="NHL repeat unit of beta-propeller proteins;
                     cl18310"
                     /db_xref="CDD:302697"
     Region          1227..1276
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1300..1338
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1356..1395
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1419..1452
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1487..1513
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          1546..2411
                     /region_name="RhsA"
                     /note="Uncharacterized conserved protein RhaS, contains 28
                     RHS repeats [General function prediction only]; COG3209"
                     /db_xref="CDD:442442"
     Region          2635..2712
                     /region_name="Tox-GHH"
                     /note="GHH signature containing HNH/Endo VII superfamily
                     nuclease toxin; pfam15636"
                     /db_xref="CDD:464783"
     CDS             1..2719
                     /gene="TENM4"
                     /coded_by="XM_054066550.1:1722..9881"
                     /db_xref="GeneID:104064148"
ORIGIN      
        1 mdvkerkpyr sltrrrdter rytsssaese dskvpqksys ssetlkaydq dsrltygnrv
       61 kdmvhqeade fcraganfsl relgledvtp thgtlyrtdi glphcsysis agsdadtead
      121 vvmspehpvr lwgrntksgr ssclssrans nltltdtehe ntetdhppnl qnhsrlrtpp
      181 ppishahtpn qhhaasinsl nrgnftprsn pspaptdhsl sgeqpastqe pahaqdnwll
      241 nsnipletrh flfkpggtsp lfcttspgyp ltsstvyspp prplprstfs rpafnlkkpy
      301 kycnwkcaal saivisvtlv illayfiamh lfglnwhlqp megqmyeite dtasswpvpt
      361 dvslypsggt glelpdrkgk gtsegkpssf fpddsfidsg eidvgrratq kippgifwrs
      421 qvfidhpvhl kfnvslgkaa lvgiygrkgl ppshtqfdfv elldgrrlla qearslegpq
      481 rqhrafvpls shetgfiqyl dsgiwhlafy ndgkesevvs flttaiesvd ncpsncygng
      541 dcvsgtchcf lgflgpdcgr ascpvlcsgn gqymkgrclc hsgwkgaecd vptnqcidis
      601 cnnhgtcimg tcicnpgykg esceevdcmd ptcsgrgvcv rgechcsvgw ggtncetpra
      661 tcldqcsghg tflpdtglcs cdpnwtghdc sieicaadcg ghgicvggtc rceegwmgta
      721 cdqrachprc nehgtcrdgk cecspgwnge hctiegcpgl cngngrctld mngwhcvcql
      781 gwrgagcdts metacgdgkd ndgdglvdcm dpdcclqplc hvnalclgsp dpldiiqetq
      841 apisqqslhs fydrikflig kdsthvipgd npfegghacv irgqvmtadg tplvgvnisf
      901 vnnplfgyti srqdgsfdlv tiggisiilh ferapfitqe htlwlpwdrf fvmetivmrh
      961 eeneipscdl snfarpnpvv spspltsfas scsekgpivp eiqalqeein isgskikvsy
     1021 lssrtagyks vlrismthpt ipfnlmkvhl mvavegrlfr kwfaaapdls yyfiwdktdv
     1081 ysqkvyglse afvsvgyeye scpdlilwek rtavlqgyei dasklggwsl dkhhalniqs
     1141 gilhkgngen qfisqqppvi gsimgngrrr siscpscngl adgnkllapv altcgsdgsl
     1201 yvgdfnyirr ifpsgnvtni lelshspahk yylttdpitg svylsdtnsr riykikstts
     1261 vkdivknsev lagtgdqclp fddtrcgdgg kgtdatltnp rgitvdkfgl iyfvdgtmir
     1321 ridqngiist vlgsndltsa rplscdsvmd isqvrlewpt dlavnpmdns lyvldnnvvl
     1381 qisenhqvri vagrpmhcqv pgmdhfllsk vaihatlesa talavshngv lyiaetdekk
     1441 inrirqvttn geislvagap sscdckndan cdcfsgddgy akdaklnaps slavcadgel
     1501 yvadlgniri rfirknkpfl nmqnlyelss pidqelylfd tsgkhlytqs lttgdylynf
     1561 tysgdgditl itdnngnlvn irrdstgmpl wlvvpdgqvy wvtmgtnsal ksvttqghev
     1621 ammtyhgssg llatksneng wttfyeydgf grltnvtfpt gqvssfrsdt dssvhvqvet
     1681 sskddvtitt nlsasgafyt llqdqvrnsy yigadgslrl ilangmeval qtephllagt
     1741 vnptvgkrnv tlpidnglnl vewrqrkeqa rgqvtvfgrr lrvhnrnlls ldfdrvtrte
     1801 kiyddhrkft lrilydqagr pslwspssrl ngvnvtyspg ghiagiqrgt msermeydqs
     1861 gritsrifad gkswsytyle ksmvlllhsq rqyifefdkn drlssvtmpn varqtletir
     1921 sigyyrniyr ppegnasviq dftedeqllh tlylgtgrrv iykygklskl aemlydttki
     1981 sftydetagm lktinlqneg ftctiryrqi gplidrqifr fteegmvnar fdynydnsfr
     2041 vtsmqavine tplpidlyry ddvsgkteqf gkfgviyydi nqiittavmt htkhfdaygr
     2101 mkevqyeifr slmywmtvqy dnmgrvvkke lkvgpyantt rysyeydadg qlqtvsindk
     2161 plwrysydln gnlhllspgn sarltplryd lrdritrlgd vqykmdedgf lkqrgndife
     2221 ynsagllika ynkasgwsvk yrydglgrrv ssktshghhl qffyadltnp tkvthlynhs
     2281 sseitslyyd lqghlfamel ssgdefyiac dnigtplavf sgtglmikqi lytaygeiym
     2341 dtnpnfqiii gyhgglydpf tklihmgrrd ydvlagrwts pdhdmwkhls snnimpfnly
     2401 mfknnnpisn sqdikcymtd vnswlltfgf qlhnvipgyp kpdtdameps yelihtqmkt
     2461 qewdnsksil gvqcevqkql kafvtlerfe qiysssiagc rqvrknknfa sggsifgkgv
     2521 kfamkdgrvt tdiisvaned grriaailnn ahylenlhft idgvdthyfi kqgpsegdls
     2581 ilglsggrrt lengvnvtvs qintvlggrt rrytdiqlqy galclntryg ttldeekarv
     2641 lelarqravt qawsreqqrl rdgeegirsw tegekqqvln tgrvqgydgy fvisveqype
     2701 lsdsannihf mrqsemgrr
//
LOCUS       XP_053922530             405 aa            linear   VRT 09-MAR-2023
DEFINITION  chromobox protein homolog 6 isoform X1 [Cuculus canorus].
ACCESSION   XP_053922530
VERSION     XP_053922530.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066555.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..405
                     /product="chromobox protein homolog 6 isoform X1"
                     /calculated_mol_wt=43459
     Region          8..65
                     /region_name="CD_Cbx6"
                     /note="chromodomain of chromobox homolog 6; cd18648"
                     /db_xref="CDD:349295"
     Site            order(10..13,32..33,35,39,41,43..44,46..47,49..50,52..53)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:349295"
     Region          358..389
                     /region_name="CBX7_C"
                     /note="CBX family C-terminal motif; pfam17218"
                     /db_xref="CDD:465385"
     CDS             1..405
                     /gene="CBX6"
                     /coded_by="XM_054066555.1:45..1262"
                     /db_xref="GeneID:104065923"
ORIGIN      
        1 melsavgerv faaesiikrr irkgrieylv kwkgwaikys twepeenild srliaafeqk
       61 ererelygpk krgpkpktfl lkaraqaeal higdvhfsvk pgsstsspkl hssaavhrlk
      121 kdirrchrms rrplprpdpq nsgsvgggag irppvspfse tvriinrkvk prepkrsrii
      181 lnlkvidkgg kpangaggla rpkipsrnrv igkskkfses vlrtqirhmk fgafslynkp
      241 saapapsleg kgeaegsqas scgiimgstp ydapsssssg cpspaphsss dpddsppkll
      301 petlspaipd wresevldls ippesaatsk hsppggcsgg qtpslslsss dpeqeagdwr
      361 pemspcsnvv vtdvtsnllt vtikefcnae dfekvaaggg gggsk
//
LOCUS       XP_053922538             387 aa            linear   VRT 09-MAR-2023
DEFINITION  chromobox protein homolog 6 isoform X2 [Cuculus canorus].
ACCESSION   XP_053922538
VERSION     XP_053922538.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066563.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..387
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..387
                     /product="chromobox protein homolog 6 isoform X2"
                     /calculated_mol_wt=41527
     Region          8..65
                     /region_name="CD_Cbx6"
                     /note="chromodomain of chromobox homolog 6; cd18648"
                     /db_xref="CDD:349295"
     Site            order(10..13,32..33,35,39,41,43..44,46..47,49..50,52..53)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:349295"
     Region          340..371
                     /region_name="CBX7_C"
                     /note="CBX family C-terminal motif; pfam17218"
                     /db_xref="CDD:465385"
     CDS             1..387
                     /gene="CBX6"
                     /coded_by="XM_054066563.1:45..1208"
                     /db_xref="GeneID:104065923"
ORIGIN      
        1 melsavgerv faaesiikrr irkgrieylv kwkgwaikys twepeenild srliaafeqk
       61 ererelygpk krgpkpktfl lkpgsstssp klhssaavhr lkkdirrchr msrrplprpd
      121 pqnsgsvggg agirppvspf setvriinrk vkprepkrsr iilnlkvidk ggkpangagg
      181 larpkipsrn rvigkskkfs esvlrtqirh mkfgafslyn kpsaapapsl egkgeaegsq
      241 asscgiimgs tpydapssss sgcpspaphs ssdpddsppk llpetlspai pdwresevld
      301 lsippesaat skhsppggcs ggqtpslsls ssdpeqeagd wrpemspcsn vvvtdvtsnl
      361 ltvtikefcn aedfekvaag gggggsk
//
LOCUS       XP_009566749             475 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal pentraxin receptor [Cuculus canorus].
ACCESSION   XP_009566749
VERSION     XP_009566749.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568454.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566749.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..475
                     /product="neuronal pentraxin receptor"
                     /calculated_mol_wt=50900
     Region          <167..>258
                     /region_name="DR0291"
                     /note="Predicted nucleic acid-binding protein DR0291,
                     contains C4-type Zn-ribbon domain [General function
                     prediction only]; COG1579"
                     /db_xref="CDD:441187"
     Region          264..469
                     /region_name="LamG"
                     /note="Laminin G domain; Laminin G-like domains are
                     usually Ca++ mediated receptors that can have binding
                     sites for steroids, beta1 integrins, heparin, sulfatides,
                     fibulin-1, and alpha-dystroglycans. Proteins that contain
                     LamG domains serve a variety of...; cl22861"
                     /db_xref="CDD:473984"
     Site            order(322,400,402,409,412)
                     /site_type="active"
                     /note="calcium mediated ligand binding site [active]"
                     /db_xref="CDD:238086"
     CDS             1..475
                     /gene="NPTXR"
                     /coded_by="XM_009568454.2:191..1618"
                     /db_xref="GeneID:104065922"
ORIGIN      
        1 mlaflgaiic iiasvhptgt gpaapaadnd saaaallpag dkglgalhgp aealasagpr
       61 lpggpplfsr fvctplsaec pdsgpgpeel lalrsaaaql rrtaleqker irmdqetire
      121 ltgklsrceg glrsnppapp aaaaaaglra aprpgtmghp paeppavrel eeavralqdr
      181 idrieqelpt rtngsvptap alardalhtk meqleeqlls kiltlqkerq aantdrsqqq
      241 hniekelnal qnrvkelehg ppsysppdaf kvtipvqnny myarmkkslp elyafticmw
      301 lkskaqaglg tpfsysvpsq aneivllewg tnplellind kvaqlplslk dkawhhvcva
      361 wttrdgkwsa yqdgeqrgag enlaswhsik pqgiiilgqe qdtlggrfda tqafvgelaq
      421 fsvwdhmlap aeilglanct shlqgnviqw ddqavevfgg askagfaace egrka
//
LOCUS       XP_053922568            1335 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology-like domain family B member 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053922568
VERSION     XP_053922568.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066593.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1335
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1335
                     /product="pleckstrin homology-like domain family B member
                     2 isoform X1"
                     /calculated_mol_wt=151624
     Region          <604..>806
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          <1119..>1187
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     Region          1224..1328
                     /region_name="PH_PHLDB1_2"
                     /note="Pleckstrin homology-like domain-containing family B
                     member 2 pleckstrin homology (PH) domain; cd14673"
                     /db_xref="CDD:270192"
     CDS             1..1335
                     /gene="PHLDB2"
                     /coded_by="XM_054066593.1:100..4107"
                     /db_xref="GeneID:104055961"
ORIGIN      
        1 mnmmpnrsnf ssfqnagsds skimaeysht qnqmelqnas lgkgsvansl englqdimen
       61 lntkkysssl kfktngdyag syltlsqplp ikpsasssfk nthsvtkiqg gkqfpcesty
      121 lpeksisvkh lgsisgmsps lsgyslgrtd fdihasrehe kslghmdkfh yskysqknks
      181 ydnvyfpgml etkkisgsll tmwngssgne lmlspasnsg aasmpsspkq grrmniedsl
      241 alnmkpvkhk dvmmetlasr prkysggsls hmgmysrslp rlykstesql vplslpprsy
      301 lgntkrkklg ekdlphnald adnylnfssc ssgvsphans vsgnnpyvss tlsvpaspri
      361 akkmllapss pylsddfdrl glsgtspsss fspvdsdrsf sgrrnlstss velddpdles
      421 yrqtpnslqa smrerknsis sisgredlmd yhrrqreerl reqemerler qrletilnlc
      481 aeysksdgdp taattvadvq kinkeleklq lsdedsvfed sqmnlearfr sqlkssasds
      541 dfselsnhsr gtasflpsrg lradehfnen aklppfaapg fvkdgtessy lsitpkipec
      601 tsdeqrgqel gqleeerivi lnnleeleqk ikdlndqmde ssreldmeca lldgeqkset
      661 tellkekeil dhlnrkiael ernvigektk eklkldaere klerlqelys eqktqldncp
      721 esmreqlqqq lkrdadlldi eskhfedlef qqlehesrld eekenltqql lrevaeyqrs
      781 ivsrkekisa lkkqanhivq qaqreqdhfv keknnlimml qrekenlcnl ekkysalsgg
      841 kgfpvspnsl kegyisvnei selygnstni spstqpptda eavatepsta vltsqpqnke
      901 lrsplcsgfv fphslsprsi aqlpsvhwpe vmathvdpip lsdtppplpa kkhrrqqqhf
      961 rnleerkkqh recmymsdtl prkktapsss lhfssstlgr svaskghlpl gqsnscgsvl
     1021 phclatmtke sesrrmhkgy nhqricesqr qkspefysrt asesnvylns fhypdrsykd
     1081 hafdtlslds sdsmetsisa cspdnissas tsnvarieem erllkqahae ktrlletrer
     1141 emeakkrale eekrrreqle krleeetsqr qkliekevki rekqraqarp ltrylpvrke
     1201 dfdlrshiet aghnietcyh vsltektcrg flikmggkik twkkrwfvfd rnkrtfsyya
     1261 dkhetklkgv iyfqaieevy ydhlknayks pnplltfsvk thdriyymva pspeamriwm
     1321 dvivtgaegy thfml
//
LOCUS       XP_053922579            1335 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology-like domain family B member 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053922579
VERSION     XP_053922579.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066604.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1335
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1335
                     /product="pleckstrin homology-like domain family B member
                     2 isoform X1"
                     /calculated_mol_wt=151624
     Region          <604..>806
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          <1119..>1187
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     Region          1224..1328
                     /region_name="PH_PHLDB1_2"
                     /note="Pleckstrin homology-like domain-containing family B
                     member 2 pleckstrin homology (PH) domain; cd14673"
                     /db_xref="CDD:270192"
     CDS             1..1335
                     /gene="PHLDB2"
                     /coded_by="XM_054066604.1:483..4490"
                     /db_xref="GeneID:104055961"
ORIGIN      
        1 mnmmpnrsnf ssfqnagsds skimaeysht qnqmelqnas lgkgsvansl englqdimen
       61 lntkkysssl kfktngdyag syltlsqplp ikpsasssfk nthsvtkiqg gkqfpcesty
      121 lpeksisvkh lgsisgmsps lsgyslgrtd fdihasrehe kslghmdkfh yskysqknks
      181 ydnvyfpgml etkkisgsll tmwngssgne lmlspasnsg aasmpsspkq grrmniedsl
      241 alnmkpvkhk dvmmetlasr prkysggsls hmgmysrslp rlykstesql vplslpprsy
      301 lgntkrkklg ekdlphnald adnylnfssc ssgvsphans vsgnnpyvss tlsvpaspri
      361 akkmllapss pylsddfdrl glsgtspsss fspvdsdrsf sgrrnlstss velddpdles
      421 yrqtpnslqa smrerknsis sisgredlmd yhrrqreerl reqemerler qrletilnlc
      481 aeysksdgdp taattvadvq kinkeleklq lsdedsvfed sqmnlearfr sqlkssasds
      541 dfselsnhsr gtasflpsrg lradehfnen aklppfaapg fvkdgtessy lsitpkipec
      601 tsdeqrgqel gqleeerivi lnnleeleqk ikdlndqmde ssreldmeca lldgeqkset
      661 tellkekeil dhlnrkiael ernvigektk eklkldaere klerlqelys eqktqldncp
      721 esmreqlqqq lkrdadlldi eskhfedlef qqlehesrld eekenltqql lrevaeyqrs
      781 ivsrkekisa lkkqanhivq qaqreqdhfv keknnlimml qrekenlcnl ekkysalsgg
      841 kgfpvspnsl kegyisvnei selygnstni spstqpptda eavatepsta vltsqpqnke
      901 lrsplcsgfv fphslsprsi aqlpsvhwpe vmathvdpip lsdtppplpa kkhrrqqqhf
      961 rnleerkkqh recmymsdtl prkktapsss lhfssstlgr svaskghlpl gqsnscgsvl
     1021 phclatmtke sesrrmhkgy nhqricesqr qkspefysrt asesnvylns fhypdrsykd
     1081 hafdtlslds sdsmetsisa cspdnissas tsnvarieem erllkqahae ktrlletrer
     1141 emeakkrale eekrrreqle krleeetsqr qkliekevki rekqraqarp ltrylpvrke
     1201 dfdlrshiet aghnietcyh vsltektcrg flikmggkik twkkrwfvfd rnkrtfsyya
     1261 dkhetklkgv iyfqaieevy ydhlknayks pnplltfsvk thdriyymva pspeamriwm
     1321 dvivtgaegy thfml
//
LOCUS       XP_053922589            1335 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology-like domain family B member 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053922589
VERSION     XP_053922589.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066614.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1335
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1335
                     /product="pleckstrin homology-like domain family B member
                     2 isoform X1"
                     /calculated_mol_wt=151624
     Region          <604..>806
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          <1119..>1187
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     Region          1224..1328
                     /region_name="PH_PHLDB1_2"
                     /note="Pleckstrin homology-like domain-containing family B
                     member 2 pleckstrin homology (PH) domain; cd14673"
                     /db_xref="CDD:270192"
     CDS             1..1335
                     /gene="PHLDB2"
                     /coded_by="XM_054066614.1:333..4340"
                     /db_xref="GeneID:104055961"
ORIGIN      
        1 mnmmpnrsnf ssfqnagsds skimaeysht qnqmelqnas lgkgsvansl englqdimen
       61 lntkkysssl kfktngdyag syltlsqplp ikpsasssfk nthsvtkiqg gkqfpcesty
      121 lpeksisvkh lgsisgmsps lsgyslgrtd fdihasrehe kslghmdkfh yskysqknks
      181 ydnvyfpgml etkkisgsll tmwngssgne lmlspasnsg aasmpsspkq grrmniedsl
      241 alnmkpvkhk dvmmetlasr prkysggsls hmgmysrslp rlykstesql vplslpprsy
      301 lgntkrkklg ekdlphnald adnylnfssc ssgvsphans vsgnnpyvss tlsvpaspri
      361 akkmllapss pylsddfdrl glsgtspsss fspvdsdrsf sgrrnlstss velddpdles
      421 yrqtpnslqa smrerknsis sisgredlmd yhrrqreerl reqemerler qrletilnlc
      481 aeysksdgdp taattvadvq kinkeleklq lsdedsvfed sqmnlearfr sqlkssasds
      541 dfselsnhsr gtasflpsrg lradehfnen aklppfaapg fvkdgtessy lsitpkipec
      601 tsdeqrgqel gqleeerivi lnnleeleqk ikdlndqmde ssreldmeca lldgeqkset
      661 tellkekeil dhlnrkiael ernvigektk eklkldaere klerlqelys eqktqldncp
      721 esmreqlqqq lkrdadlldi eskhfedlef qqlehesrld eekenltqql lrevaeyqrs
      781 ivsrkekisa lkkqanhivq qaqreqdhfv keknnlimml qrekenlcnl ekkysalsgg
      841 kgfpvspnsl kegyisvnei selygnstni spstqpptda eavatepsta vltsqpqnke
      901 lrsplcsgfv fphslsprsi aqlpsvhwpe vmathvdpip lsdtppplpa kkhrrqqqhf
      961 rnleerkkqh recmymsdtl prkktapsss lhfssstlgr svaskghlpl gqsnscgsvl
     1021 phclatmtke sesrrmhkgy nhqricesqr qkspefysrt asesnvylns fhypdrsykd
     1081 hafdtlslds sdsmetsisa cspdnissas tsnvarieem erllkqahae ktrlletrer
     1141 emeakkrale eekrrreqle krleeetsqr qkliekevki rekqraqarp ltrylpvrke
     1201 dfdlrshiet aghnietcyh vsltektcrg flikmggkik twkkrwfvfd rnkrtfsyya
     1261 dkhetklkgv iyfqaieevy ydhlknayks pnplltfsvk thdriyymva pspeamriwm
     1321 dvivtgaegy thfml
//
LOCUS       XP_053922597            1335 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology-like domain family B member 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053922597
VERSION     XP_053922597.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066622.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1335
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1335
                     /product="pleckstrin homology-like domain family B member
                     2 isoform X1"
                     /calculated_mol_wt=151624
     Region          <604..>806
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          <1119..>1187
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     Region          1224..1328
                     /region_name="PH_PHLDB1_2"
                     /note="Pleckstrin homology-like domain-containing family B
                     member 2 pleckstrin homology (PH) domain; cd14673"
                     /db_xref="CDD:270192"
     CDS             1..1335
                     /gene="PHLDB2"
                     /coded_by="XM_054066622.1:182..4189"
                     /db_xref="GeneID:104055961"
ORIGIN      
        1 mnmmpnrsnf ssfqnagsds skimaeysht qnqmelqnas lgkgsvansl englqdimen
       61 lntkkysssl kfktngdyag syltlsqplp ikpsasssfk nthsvtkiqg gkqfpcesty
      121 lpeksisvkh lgsisgmsps lsgyslgrtd fdihasrehe kslghmdkfh yskysqknks
      181 ydnvyfpgml etkkisgsll tmwngssgne lmlspasnsg aasmpsspkq grrmniedsl
      241 alnmkpvkhk dvmmetlasr prkysggsls hmgmysrslp rlykstesql vplslpprsy
      301 lgntkrkklg ekdlphnald adnylnfssc ssgvsphans vsgnnpyvss tlsvpaspri
      361 akkmllapss pylsddfdrl glsgtspsss fspvdsdrsf sgrrnlstss velddpdles
      421 yrqtpnslqa smrerknsis sisgredlmd yhrrqreerl reqemerler qrletilnlc
      481 aeysksdgdp taattvadvq kinkeleklq lsdedsvfed sqmnlearfr sqlkssasds
      541 dfselsnhsr gtasflpsrg lradehfnen aklppfaapg fvkdgtessy lsitpkipec
      601 tsdeqrgqel gqleeerivi lnnleeleqk ikdlndqmde ssreldmeca lldgeqkset
      661 tellkekeil dhlnrkiael ernvigektk eklkldaere klerlqelys eqktqldncp
      721 esmreqlqqq lkrdadlldi eskhfedlef qqlehesrld eekenltqql lrevaeyqrs
      781 ivsrkekisa lkkqanhivq qaqreqdhfv keknnlimml qrekenlcnl ekkysalsgg
      841 kgfpvspnsl kegyisvnei selygnstni spstqpptda eavatepsta vltsqpqnke
      901 lrsplcsgfv fphslsprsi aqlpsvhwpe vmathvdpip lsdtppplpa kkhrrqqqhf
      961 rnleerkkqh recmymsdtl prkktapsss lhfssstlgr svaskghlpl gqsnscgsvl
     1021 phclatmtke sesrrmhkgy nhqricesqr qkspefysrt asesnvylns fhypdrsykd
     1081 hafdtlslds sdsmetsisa cspdnissas tsnvarieem erllkqahae ktrlletrer
     1141 emeakkrale eekrrreqle krleeetsqr qkliekevki rekqraqarp ltrylpvrke
     1201 dfdlrshiet aghnietcyh vsltektcrg flikmggkik twkkrwfvfd rnkrtfsyya
     1261 dkhetklkgv iyfqaieevy ydhlknayks pnplltfsvk thdriyymva pspeamriwm
     1321 dvivtgaegy thfml
//
LOCUS       XP_053922607            1335 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology-like domain family B member 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053922607
VERSION     XP_053922607.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066632.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1335
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1335
                     /product="pleckstrin homology-like domain family B member
                     2 isoform X1"
                     /calculated_mol_wt=151624
     Region          <604..>806
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          <1119..>1187
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     Region          1224..1328
                     /region_name="PH_PHLDB1_2"
                     /note="Pleckstrin homology-like domain-containing family B
                     member 2 pleckstrin homology (PH) domain; cd14673"
                     /db_xref="CDD:270192"
     CDS             1..1335
                     /gene="PHLDB2"
                     /coded_by="XM_054066632.1:65..4072"
                     /db_xref="GeneID:104055961"
ORIGIN      
        1 mnmmpnrsnf ssfqnagsds skimaeysht qnqmelqnas lgkgsvansl englqdimen
       61 lntkkysssl kfktngdyag syltlsqplp ikpsasssfk nthsvtkiqg gkqfpcesty
      121 lpeksisvkh lgsisgmsps lsgyslgrtd fdihasrehe kslghmdkfh yskysqknks
      181 ydnvyfpgml etkkisgsll tmwngssgne lmlspasnsg aasmpsspkq grrmniedsl
      241 alnmkpvkhk dvmmetlasr prkysggsls hmgmysrslp rlykstesql vplslpprsy
      301 lgntkrkklg ekdlphnald adnylnfssc ssgvsphans vsgnnpyvss tlsvpaspri
      361 akkmllapss pylsddfdrl glsgtspsss fspvdsdrsf sgrrnlstss velddpdles
      421 yrqtpnslqa smrerknsis sisgredlmd yhrrqreerl reqemerler qrletilnlc
      481 aeysksdgdp taattvadvq kinkeleklq lsdedsvfed sqmnlearfr sqlkssasds
      541 dfselsnhsr gtasflpsrg lradehfnen aklppfaapg fvkdgtessy lsitpkipec
      601 tsdeqrgqel gqleeerivi lnnleeleqk ikdlndqmde ssreldmeca lldgeqkset
      661 tellkekeil dhlnrkiael ernvigektk eklkldaere klerlqelys eqktqldncp
      721 esmreqlqqq lkrdadlldi eskhfedlef qqlehesrld eekenltqql lrevaeyqrs
      781 ivsrkekisa lkkqanhivq qaqreqdhfv keknnlimml qrekenlcnl ekkysalsgg
      841 kgfpvspnsl kegyisvnei selygnstni spstqpptda eavatepsta vltsqpqnke
      901 lrsplcsgfv fphslsprsi aqlpsvhwpe vmathvdpip lsdtppplpa kkhrrqqqhf
      961 rnleerkkqh recmymsdtl prkktapsss lhfssstlgr svaskghlpl gqsnscgsvl
     1021 phclatmtke sesrrmhkgy nhqricesqr qkspefysrt asesnvylns fhypdrsykd
     1081 hafdtlslds sdsmetsisa cspdnissas tsnvarieem erllkqahae ktrlletrer
     1141 emeakkrale eekrrreqle krleeetsqr qkliekevki rekqraqarp ltrylpvrke
     1201 dfdlrshiet aghnietcyh vsltektcrg flikmggkik twkkrwfvfd rnkrtfsyya
     1261 dkhetklkgv iyfqaieevy ydhlknayks pnplltfsvk thdriyymva pspeamriwm
     1321 dvivtgaegy thfml
//
LOCUS       XP_053922616            1292 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology-like domain family B member 2 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053922616
VERSION     XP_053922616.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066641.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1292
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1292
                     /product="pleckstrin homology-like domain family B member
                     2 isoform X2"
                     /calculated_mol_wt=146338
     Region          <603..>794
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          <1073..1146
                     /region_name="ERM_helical"
                     /note="Ezrin/radixin/moesin, alpha-helical domain;
                     pfam20492"
                     /db_xref="CDD:466641"
     Region          1181..1285
                     /region_name="PH_PHLDB1_2"
                     /note="Pleckstrin homology-like domain-containing family B
                     member 2 pleckstrin homology (PH) domain; cd14673"
                     /db_xref="CDD:270192"
     CDS             1..1292
                     /gene="PHLDB2"
                     /coded_by="XM_054066641.1:100..3978"
                     /db_xref="GeneID:104055961"
ORIGIN      
        1 mnmmpnrsnf ssfqnagsds skimaeysht qnqmelqnas lgkgsvansl englqdimen
       61 lntkkysssl kfktngdyag syltlsqplp ikpsasssfk nthsvtkiqg gkqfpcesty
      121 lpeksisvkh lgsisgmsps lsgyslgrtd fdihasrehe kslghmdkfh yskysqknks
      181 ydnvyfpgml etkkisgsll tmwngssgne lmlspasnsg aasmpsspkq grrmniedsl
      241 alnmkpvkhk dvmmetlasr prkysggsls hmgmysrslp rlykstesql vplslpprsy
      301 lgntkrkklg ekdlphnald adnylnfssc ssgvsphans vsgnnpyvss tlsvpaspri
      361 akkmllapss pylsddfdrl glsgtspsss fspvdsdrsf sgrrnlstss velddpdles
      421 yrqtpnslqa smrerknsis sisgredlmd yhrrqreerl reqemerler qrletilnlc
      481 aeysksdgdp taattvadvq kinkeleklq lsdedsvfed sqmnlearfr sqlkssasds
      541 dfselsnhsr gtasflpsrg lradehfnen aklppfaapg fvkdgtessy lsitpkipec
      601 tsdeqrgqel gqleeerivi lnnleeleqk ikdlndqmde ssreldmeca lldgeqkset
      661 tellkekeil dhlnrkiael ernvigektk dadlldiesk hfedlefqql ehesrldeek
      721 enltqqllre vaeyqrsivs rkekisalkk qanhivqqaq reqdhfvkek nnlimmlqre
      781 kenlcnlekk ysalsggkgf pvspnslkeg yisvneisel ygnstnisps tqpptdaeav
      841 atepstavlt sqpqnkelrs plcsgfvfph slsprsiaql psvhwpevma thvdpiplsd
      901 tppplpakkh rrqqqhfrnl eerkkqhrec mymsdtlprk ktapssslhf ssstlgrsva
      961 skghlplgqs nscgsvlphc latmtkeses rrmhkgynhq ricesqrqks pefysrtase
     1021 snvylnsfhy pdrsykdhaf dtlsldssds metsisacsp dnissastsn varieemerl
     1081 lkqahaektr lletrereme akkraleeek rrreqlekrl eeetsqrqkl iekevkirek
     1141 qraqarpltr ylpvrkedfd lrshietagh nietcyhvsl tektcrgfli kmggkiktwk
     1201 krwfvfdrnk rtfsyyadkh etklkgviyf qaieevyydh lknaykspnp lltfsvkthd
     1261 riyymvapsp eamriwmdvi vtgaegythf ml
//
LOCUS       XP_053922626            1277 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology-like domain family B member 2 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053922626
VERSION     XP_053922626.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066651.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1277
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1277
                     /product="pleckstrin homology-like domain family B member
                     2 isoform X3"
                     /calculated_mol_wt=145155
     Region          <604..>806
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          <1061..>1129
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     Region          1166..1270
                     /region_name="PH_PHLDB1_2"
                     /note="Pleckstrin homology-like domain-containing family B
                     member 2 pleckstrin homology (PH) domain; cd14673"
                     /db_xref="CDD:270192"
     CDS             1..1277
                     /gene="PHLDB2"
                     /coded_by="XM_054066651.1:100..3933"
                     /db_xref="GeneID:104055961"
ORIGIN      
        1 mnmmpnrsnf ssfqnagsds skimaeysht qnqmelqnas lgkgsvansl englqdimen
       61 lntkkysssl kfktngdyag syltlsqplp ikpsasssfk nthsvtkiqg gkqfpcesty
      121 lpeksisvkh lgsisgmsps lsgyslgrtd fdihasrehe kslghmdkfh yskysqknks
      181 ydnvyfpgml etkkisgsll tmwngssgne lmlspasnsg aasmpsspkq grrmniedsl
      241 alnmkpvkhk dvmmetlasr prkysggsls hmgmysrslp rlykstesql vplslpprsy
      301 lgntkrkklg ekdlphnald adnylnfssc ssgvsphans vsgnnpyvss tlsvpaspri
      361 akkmllapss pylsddfdrl glsgtspsss fspvdsdrsf sgrrnlstss velddpdles
      421 yrqtpnslqa smrerknsis sisgredlmd yhrrqreerl reqemerler qrletilnlc
      481 aeysksdgdp taattvadvq kinkeleklq lsdedsvfed sqmnlearfr sqlkssasds
      541 dfselsnhsr gtasflpsrg lradehfnen aklppfaapg fvkdgtessy lsitpkipec
      601 tsdeqrgqel gqleeerivi lnnleeleqk ikdlndqmde ssreldmeca lldgeqkset
      661 tellkekeil dhlnrkiael ernvigektk eklkldaere klerlqelys eqktqldncp
      721 esmreqlqqq lkrdadlldi eskhfedlef qqlehesrld eekenltqql lrevaeyqrs
      781 ivsrkekisa lkkqanhivq qaqreqdhfv keknnlimml qrekenlcnl ekkysalsgg
      841 kgfpvspnsl kegyisvnei selygnstni spstqpptda eavatepsta vltsqpqnke
      901 hfrnleerkk qhrecmymsd tlprkktaps sslhfssstl grsvaskghl plgqsnscgs
      961 vlphclatmt kesesrrmhk gynhqrices qrqkspefys rtasesnvyl nsfhypdrsy
     1021 kdhafdtlsl dssdsmetsi sacspdniss astsnvarie emerllkqah aektrlletr
     1081 eremeakkra leeekrrreq lekrleeets qrqkliekev kirekqraqa rpltrylpvr
     1141 kedfdlrshi etaghnietc yhvsltektc rgflikmggk iktwkkrwfv fdrnkrtfsy
     1201 yadkhetklk gviyfqaiee vyydhlknay kspnplltfs vkthdriyym vapspeamri
     1261 wmdvivtgae gythfml
//
LOCUS       XP_053922634            1234 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology-like domain family B member 2 isoform X4
            [Cuculus canorus].
ACCESSION   XP_053922634
VERSION     XP_053922634.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066659.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1234
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1234
                     /product="pleckstrin homology-like domain family B member
                     2 isoform X4"
                     /calculated_mol_wt=139869
     Region          <603..>794
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          <1018..>1086
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     Region          1123..1227
                     /region_name="PH_PHLDB1_2"
                     /note="Pleckstrin homology-like domain-containing family B
                     member 2 pleckstrin homology (PH) domain; cd14673"
                     /db_xref="CDD:270192"
     CDS             1..1234
                     /gene="PHLDB2"
                     /coded_by="XM_054066659.1:100..3804"
                     /db_xref="GeneID:104055961"
ORIGIN      
        1 mnmmpnrsnf ssfqnagsds skimaeysht qnqmelqnas lgkgsvansl englqdimen
       61 lntkkysssl kfktngdyag syltlsqplp ikpsasssfk nthsvtkiqg gkqfpcesty
      121 lpeksisvkh lgsisgmsps lsgyslgrtd fdihasrehe kslghmdkfh yskysqknks
      181 ydnvyfpgml etkkisgsll tmwngssgne lmlspasnsg aasmpsspkq grrmniedsl
      241 alnmkpvkhk dvmmetlasr prkysggsls hmgmysrslp rlykstesql vplslpprsy
      301 lgntkrkklg ekdlphnald adnylnfssc ssgvsphans vsgnnpyvss tlsvpaspri
      361 akkmllapss pylsddfdrl glsgtspsss fspvdsdrsf sgrrnlstss velddpdles
      421 yrqtpnslqa smrerknsis sisgredlmd yhrrqreerl reqemerler qrletilnlc
      481 aeysksdgdp taattvadvq kinkeleklq lsdedsvfed sqmnlearfr sqlkssasds
      541 dfselsnhsr gtasflpsrg lradehfnen aklppfaapg fvkdgtessy lsitpkipec
      601 tsdeqrgqel gqleeerivi lnnleeleqk ikdlndqmde ssreldmeca lldgeqkset
      661 tellkekeil dhlnrkiael ernvigektk dadlldiesk hfedlefqql ehesrldeek
      721 enltqqllre vaeyqrsivs rkekisalkk qanhivqqaq reqdhfvkek nnlimmlqre
      781 kenlcnlekk ysalsggkgf pvspnslkeg yisvneisel ygnstnisps tqpptdaeav
      841 atepstavlt sqpqnkehfr nleerkkqhr ecmymsdtlp rkktapsssl hfssstlgrs
      901 vaskghlplg qsnscgsvlp hclatmtkes esrrmhkgyn hqricesqrq kspefysrta
      961 sesnvylnsf hypdrsykdh afdtlsldss dsmetsisac spdnissast snvarieeme
     1021 rllkqahaek trlletrere meakkralee ekrrreqlek rleeetsqrq kliekevkir
     1081 ekqraqarpl trylpvrked fdlrshieta ghnietcyhv sltektcrgf likmggkikt
     1141 wkkrwfvfdr nkrtfsyyad khetklkgvi yfqaieevyy dhlknayksp nplltfsvkt
     1201 hdriyymvap speamriwmd vivtgaegyt hfml
//
LOCUS       XP_053922642            1229 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology-like domain family B member 2 isoform X5
            [Cuculus canorus].
ACCESSION   XP_053922642
VERSION     XP_053922642.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066667.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1229
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1229
                     /product="pleckstrin homology-like domain family B member
                     2 isoform X5"
                     /calculated_mol_wt=140136
     Region          <593..>1080
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     Region          <604..>806
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          1118..1222
                     /region_name="PH_PHLDB1_2"
                     /note="Pleckstrin homology-like domain-containing family B
                     member 2 pleckstrin homology (PH) domain; cd14673"
                     /db_xref="CDD:270192"
     CDS             1..1229
                     /gene="PHLDB2"
                     /coded_by="XM_054066667.1:100..3789"
                     /db_xref="GeneID:104055961"
ORIGIN      
        1 mnmmpnrsnf ssfqnagsds skimaeysht qnqmelqnas lgkgsvansl englqdimen
       61 lntkkysssl kfktngdyag syltlsqplp ikpsasssfk nthsvtkiqg gkqfpcesty
      121 lpeksisvkh lgsisgmsps lsgyslgrtd fdihasrehe kslghmdkfh yskysqknks
      181 ydnvyfpgml etkkisgsll tmwngssgne lmlspasnsg aasmpsspkq grrmniedsl
      241 alnmkpvkhk dvmmetlasr prkysggsls hmgmysrslp rlykstesql vplslpprsy
      301 lgntkrkklg ekdlphnald adnylnfssc ssgvsphans vsgnnpyvss tlsvpaspri
      361 akkmllapss pylsddfdrl glsgtspsss fspvdsdrsf sgrrnlstss velddpdles
      421 yrqtpnslqa smrerknsis sisgredlmd yhrrqreerl reqemerler qrletilnlc
      481 aeysksdgdp taattvadvq kinkeleklq lsdedsvfed sqmnlearfr sqlkssasds
      541 dfselsnhsr gtasflpsrg lradehfnen aklppfaapg fvkdgtessy lsitpkipec
      601 tsdeqrgqel gqleeerivi lnnleeleqk ikdlndqmde ssreldmeca lldgeqkset
      661 tellkekeil dhlnrkiael ernvigektk eklkldaere klerlqelys eqktqldncp
      721 esmreqlqqq lkrdadlldi eskhfedlef qqlehesrld eekenltqql lrevaeyqrs
      781 ivsrkekisa lkkqanhivq qaqreqdhfv keknnlimml qrekenlcnl ekkysalsgg
      841 kgfpvspnsl kehfrnleer kkqhrecmym sdtlprkkta pssslhfsss tlgrsvaskg
      901 hlplgqsnsc gsvlphclat mtkesesrrm hkgynhqric esqrqkspef ysrtasesnv
      961 ylnsfhypdr sykdhafdtl sldssdsmet sisacspdni ssastsnvar ieemerllkq
     1021 ahaektrlle treremeakk raleeekrrr eqlekrleee tsqrqkliek evkirekqra
     1081 qarpltrylp vrkedfdlrs hietaghnie tcyhvsltek tcrgflikmg gkiktwkkrw
     1141 fvfdrnkrtf syyadkhetk lkgviyfqai eevyydhlkn aykspnpllt fsvkthdriy
     1201 ymvapspeam riwmdvivtg aegythfml
//
LOCUS       XP_053922656             797 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein M1 [Cuculus canorus].
ACCESSION   XP_053922656
VERSION     XP_053922656.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066681.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..797
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..797
                     /product="forkhead box protein M1"
                     /calculated_mol_wt=88658
     Region          256..332
                     /region_name="FH_FOXM"
                     /note="Forkhead (FH) domain found in the Forkhead box
                     protein M (FOXM) subfamily; cd20029"
                     /db_xref="CDD:410803"
     Site            order(256,260..261,279..280,283,298,303..304,306..307,310,
                     317,326,328)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410803"
     CDS             1..797
                     /gene="FOXM1"
                     /coded_by="XM_054066681.1:283..2676"
                     /db_xref="GeneID:104060645"
ORIGIN      
        1 mrtsprrpli lkrrklslpq qdvsttssrd enngqnekis kqehsqeyqh nseprdkmnc
       61 glqkfpagik iidhptmpnt qvvsiptnad iqsiiealta kgkecgnhgp nkfilissgg
      121 tscsagrtps qhlpsekkps aatkdadgqe rdknvtktrg lagetvlwhs gidslvgqeq
      181 ennsggktms svldnsltni qwlgkmrsdg lslcsvkqdv ekenqmpqqe rikteedsaa
      241 ttattspswq esvserppys ymamiqfain stekkrmtlk diytwiedhf pyfkhvakpg
      301 wknsirhnls lhdmfvrets angkisfwti hpdanrcltl dqvfkpldle sptspehses
      361 qqkrhlpdpq knmrsnsssk nepqnarrkm kpllprvnsy lvpiqfplsq plvlqpsmkv
      421 plstaqrpsl nsseifrsnk rvriapkmsh steesssfpl pavkdesqcd eglfssthyl
      481 kessseagee sasfpetvci keeessqldd wlspfastlt vkeepglflp vssakekkqf
      541 tilkspskgv sdtlvikrre rrdmgrsrrk qhlalpssee pvlvlpesnd fdtlqlgaes
      601 rflqesqple ntsqfsclqg eegpfktpvk emfsnlpvss tpskasattt pplggldpwk
      661 saslakgsqe ldfspvrtlq lpfthlqenq dllgfnstpl ksslfespre llntessdmv
      721 hapltsspaf iheftkqssv elaasgften rslmeglild tmndslskil ldisfpgled
      781 enlgtdisws qlipelk
//
LOCUS       XP_053922662             797 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein M1 [Cuculus canorus].
ACCESSION   XP_053922662
VERSION     XP_053922662.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066687.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..797
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..797
                     /product="forkhead box protein M1"
                     /calculated_mol_wt=88658
     Region          256..332
                     /region_name="FH_FOXM"
                     /note="Forkhead (FH) domain found in the Forkhead box
                     protein M (FOXM) subfamily; cd20029"
                     /db_xref="CDD:410803"
     Site            order(256,260..261,279..280,283,298,303..304,306..307,310,
                     317,326,328)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410803"
     CDS             1..797
                     /gene="FOXM1"
                     /coded_by="XM_054066687.1:142..2535"
                     /db_xref="GeneID:104060645"
ORIGIN      
        1 mrtsprrpli lkrrklslpq qdvsttssrd enngqnekis kqehsqeyqh nseprdkmnc
       61 glqkfpagik iidhptmpnt qvvsiptnad iqsiiealta kgkecgnhgp nkfilissgg
      121 tscsagrtps qhlpsekkps aatkdadgqe rdknvtktrg lagetvlwhs gidslvgqeq
      181 ennsggktms svldnsltni qwlgkmrsdg lslcsvkqdv ekenqmpqqe rikteedsaa
      241 ttattspswq esvserppys ymamiqfain stekkrmtlk diytwiedhf pyfkhvakpg
      301 wknsirhnls lhdmfvrets angkisfwti hpdanrcltl dqvfkpldle sptspehses
      361 qqkrhlpdpq knmrsnsssk nepqnarrkm kpllprvnsy lvpiqfplsq plvlqpsmkv
      421 plstaqrpsl nsseifrsnk rvriapkmsh steesssfpl pavkdesqcd eglfssthyl
      481 kessseagee sasfpetvci keeessqldd wlspfastlt vkeepglflp vssakekkqf
      541 tilkspskgv sdtlvikrre rrdmgrsrrk qhlalpssee pvlvlpesnd fdtlqlgaes
      601 rflqesqple ntsqfsclqg eegpfktpvk emfsnlpvss tpskasattt pplggldpwk
      661 saslakgsqe ldfspvrtlq lpfthlqenq dllgfnstpl ksslfespre llntessdmv
      721 hapltsspaf iheftkqssv elaasgften rslmeglild tmndslskil ldisfpgled
      781 enlgtdisws qlipelk
//
LOCUS       XP_053922670             797 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein M1 [Cuculus canorus].
ACCESSION   XP_053922670
VERSION     XP_053922670.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066695.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..797
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..797
                     /product="forkhead box protein M1"
                     /calculated_mol_wt=88658
     Region          256..332
                     /region_name="FH_FOXM"
                     /note="Forkhead (FH) domain found in the Forkhead box
                     protein M (FOXM) subfamily; cd20029"
                     /db_xref="CDD:410803"
     Site            order(256,260..261,279..280,283,298,303..304,306..307,310,
                     317,326,328)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410803"
     CDS             1..797
                     /gene="FOXM1"
                     /coded_by="XM_054066695.1:73..2466"
                     /db_xref="GeneID:104060645"
ORIGIN      
        1 mrtsprrpli lkrrklslpq qdvsttssrd enngqnekis kqehsqeyqh nseprdkmnc
       61 glqkfpagik iidhptmpnt qvvsiptnad iqsiiealta kgkecgnhgp nkfilissgg
      121 tscsagrtps qhlpsekkps aatkdadgqe rdknvtktrg lagetvlwhs gidslvgqeq
      181 ennsggktms svldnsltni qwlgkmrsdg lslcsvkqdv ekenqmpqqe rikteedsaa
      241 ttattspswq esvserppys ymamiqfain stekkrmtlk diytwiedhf pyfkhvakpg
      301 wknsirhnls lhdmfvrets angkisfwti hpdanrcltl dqvfkpldle sptspehses
      361 qqkrhlpdpq knmrsnsssk nepqnarrkm kpllprvnsy lvpiqfplsq plvlqpsmkv
      421 plstaqrpsl nsseifrsnk rvriapkmsh steesssfpl pavkdesqcd eglfssthyl
      481 kessseagee sasfpetvci keeessqldd wlspfastlt vkeepglflp vssakekkqf
      541 tilkspskgv sdtlvikrre rrdmgrsrrk qhlalpssee pvlvlpesnd fdtlqlgaes
      601 rflqesqple ntsqfsclqg eegpfktpvk emfsnlpvss tpskasattt pplggldpwk
      661 saslakgsqe ldfspvrtlq lpfthlqenq dllgfnstpl ksslfespre llntessdmv
      721 hapltsspaf iheftkqssv elaasgften rslmeglild tmndslskil ldisfpgled
      781 enlgtdisws qlipelk
//
LOCUS       XP_053922685             489 aa            linear   VRT 09-MAR-2023
DEFINITION  tubby-related protein 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053922685
VERSION     XP_053922685.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066710.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..489
                     /product="tubby-related protein 3 isoform X1"
                     /calculated_mol_wt=54069
     Region          55..221
                     /region_name="Tub_N"
                     /note="Tubby N-terminal; pfam16322"
                     /db_xref="CDD:465092"
     Region          240..484
                     /region_name="Tub"
                     /note="Tub family; pfam01167"
                     /db_xref="CDD:460094"
     CDS             1..489
                     /gene="TULP3"
                     /coded_by="XM_054066710.1:138..1607"
                     /db_xref="GeneID:104060647"
ORIGIN      
        1 maprsgaecv vngggrgpia tvgpgmesar gqggsaggsi fedesmklrq lklenqrall
       61 ekkqrkkrld plmvqpnpea klrrskpkgc eeqtllvetp tpfhsdvtlh gidgpaaflk
      121 sevqdlgtkl qtlsagcskt ednadeendg kaltdsagkp dlqeilqkrg ilgslnfdee
      181 dteeeeaskr pvshspypes erpssatsek sfaetgascs pspqadvqlg evenledfal
      241 rpaprgitvk critrdkkgm drglfptyym hlerednrkt fllagrkrkk sktsnylisv
      301 dptdlsrege sfigklrsnl mgtkftvydh gvspvkaqgl vekahmrqel aaicyetnvl
      361 gfkgprkmsv iipgmnvnhk ripvhprneh esllskwqnk dlenlielhn kapvwnddtq
      421 syvlnfhgrv tqasvknfqi vhdndpdyiv mqfgrvaedv ftldynyplc alqafaigls
      481 sfdsklace
//
LOCUS       XP_053922694             482 aa            linear   VRT 09-MAR-2023
DEFINITION  tubby-related protein 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053922694
VERSION     XP_053922694.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066719.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..482
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..482
                     /product="tubby-related protein 3 isoform X2"
                     /calculated_mol_wt=53728
     Region          54..214
                     /region_name="Tub_N"
                     /note="Tubby N-terminal; pfam16322"
                     /db_xref="CDD:465092"
     Region          233..477
                     /region_name="Tub"
                     /note="Tub family; pfam01167"
                     /db_xref="CDD:460094"
     CDS             1..482
                     /gene="TULP3"
                     /coded_by="XM_054066719.1:151..1599"
                     /db_xref="GeneID:104060647"
ORIGIN      
        1 mgtlrvsapa ngaalrgrvr cqrrrpgphs nggsrdgera gpgrlrrrqr allekkqrkk
       61 rldplmvqpn peaklrrskp kgceeqtllv etptpfhsdv tlhgidgpaa flksevqdlg
      121 tklqtlsagc sktednadee ndgkaltdsa gkpdlqeilq krgilgslnf deedteeeea
      181 skrpvshspy peserpssat seksfaetga scspspqadv qlgevenled falrpaprgi
      241 tvkcritrdk kgmdrglfpt yymhleredn rktfllagrk rkksktsnyl isvdptdlsr
      301 egesfigklr snlmgtkftv ydhgvspvka qglvekahmr qelaaicyet nvlgfkgprk
      361 msviipgmnv nhkripvhpr nehesllskw qnkdlenlie lhnkapvwnd dtqsyvlnfh
      421 grvtqasvkn fqivhdndpd yivmqfgrva edvftldyny plcalqafai glssfdskla
      481 ce
//
LOCUS       XP_053922699             444 aa            linear   VRT 09-MAR-2023
DEFINITION  tubby-related protein 3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053922699
VERSION     XP_053922699.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066724.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..444
                     /product="tubby-related protein 3 isoform X3"
                     /calculated_mol_wt=49823
     Region          10..176
                     /region_name="Tub_N"
                     /note="Tubby N-terminal; pfam16322"
                     /db_xref="CDD:465092"
     Region          195..439
                     /region_name="Tub"
                     /note="Tub family; pfam01167"
                     /db_xref="CDD:460094"
     CDS             1..444
                     /gene="TULP3"
                     /coded_by="XM_054066724.1:203..1537"
                     /db_xref="GeneID:104060647"
ORIGIN      
        1 mklrqlklen qrallekkqr kkrldplmvq pnpeaklrrs kpkgceeqtl lvetptpfhs
       61 dvtlhgidgp aaflksevqd lgtklqtlsa gcsktednad eendgkaltd sagkpdlqei
      121 lqkrgilgsl nfdeedteee easkrpvshs pypeserpss atseksfaet gascspspqa
      181 dvqlgevenl edfalrpapr gitvkcritr dkkgmdrglf ptyymhlere dnrktfllag
      241 rkrkksktsn ylisvdptdl sregesfigk lrsnlmgtkf tvydhgvspv kaqglvekah
      301 mrqelaaicy etnvlgfkgp rkmsviipgm nvnhkripvh prneheslls kwqnkdlenl
      361 ielhnkapvw nddtqsyvln fhgrvtqasv knfqivhdnd pdyivmqfgr vaedvftldy
      421 nyplcalqaf aiglssfdsk lace
//
LOCUS       XP_053922707             444 aa            linear   VRT 09-MAR-2023
DEFINITION  tubby-related protein 3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053922707
VERSION     XP_053922707.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066732.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..444
                     /product="tubby-related protein 3 isoform X3"
                     /calculated_mol_wt=49823
     Region          10..176
                     /region_name="Tub_N"
                     /note="Tubby N-terminal; pfam16322"
                     /db_xref="CDD:465092"
     Region          195..439
                     /region_name="Tub"
                     /note="Tub family; pfam01167"
                     /db_xref="CDD:460094"
     CDS             1..444
                     /gene="TULP3"
                     /coded_by="XM_054066732.1:38..1372"
                     /db_xref="GeneID:104060647"
ORIGIN      
        1 mklrqlklen qrallekkqr kkrldplmvq pnpeaklrrs kpkgceeqtl lvetptpfhs
       61 dvtlhgidgp aaflksevqd lgtklqtlsa gcsktednad eendgkaltd sagkpdlqei
      121 lqkrgilgsl nfdeedteee easkrpvshs pypeserpss atseksfaet gascspspqa
      181 dvqlgevenl edfalrpapr gitvkcritr dkkgmdrglf ptyymhlere dnrktfllag
      241 rkrkksktsn ylisvdptdl sregesfigk lrsnlmgtkf tvydhgvspv kaqglvekah
      301 mrqelaaicy etnvlgfkgp rkmsviipgm nvnhkripvh prneheslls kwqnkdlenl
      361 ielhnkapvw nddtqsyvln fhgrvtqasv knfqivhdnd pdyivmqfgr vaedvftldy
      421 nyplcalqaf aiglssfdsk lace
//
LOCUS       XP_053922714             417 aa            linear   VRT 09-MAR-2023
DEFINITION  tubby-related protein 3 isoform X4 [Cuculus canorus].
ACCESSION   XP_053922714
VERSION     XP_053922714.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066739.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..417
                     /product="tubby-related protein 3 isoform X4"
                     /calculated_mol_wt=46465
     Region          1..149
                     /region_name="Tub_N"
                     /note="Tubby N-terminal; pfam16322"
                     /db_xref="CDD:465092"
     Region          168..412
                     /region_name="Tub"
                     /note="Tub family; pfam01167"
                     /db_xref="CDD:460094"
     CDS             1..417
                     /gene="TULP3"
                     /coded_by="XM_054066739.1:328..1581"
                     /db_xref="GeneID:104060647"
ORIGIN      
        1 mvqpnpeakl rrskpkgcee qtllvetptp fhsdvtlhgi dgpaaflkse vqdlgtklqt
       61 lsagcskted nadeendgka ltdsagkpdl qeilqkrgil gslnfdeedt eeeeaskrpv
      121 shspypeser pssatseksf aetgascsps pqadvqlgev enledfalrp aprgitvkcr
      181 itrdkkgmdr glfptyymhl erednrktfl lagrkrkksk tsnylisvdp tdlsregesf
      241 igklrsnlmg tkftvydhgv spvkaqglve kahmrqelaa icyetnvlgf kgprkmsvii
      301 pgmnvnhkri pvhprnehes llskwqnkdl enlielhnka pvwnddtqsy vlnfhgrvtq
      361 asvknfqivh dndpdyivmq fgrvaedvft ldynyplcal qafaiglssf dsklace
//
LOCUS       XP_053922724             417 aa            linear   VRT 09-MAR-2023
DEFINITION  tubby-related protein 3 isoform X4 [Cuculus canorus].
ACCESSION   XP_053922724
VERSION     XP_053922724.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066749.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..417
                     /product="tubby-related protein 3 isoform X4"
                     /calculated_mol_wt=46465
     Region          1..149
                     /region_name="Tub_N"
                     /note="Tubby N-terminal; pfam16322"
                     /db_xref="CDD:465092"
     Region          168..412
                     /region_name="Tub"
                     /note="Tub family; pfam01167"
                     /db_xref="CDD:460094"
     CDS             1..417
                     /gene="TULP3"
                     /coded_by="XM_054066749.1:3445..4698"
                     /db_xref="GeneID:104060647"
ORIGIN      
        1 mvqpnpeakl rrskpkgcee qtllvetptp fhsdvtlhgi dgpaaflkse vqdlgtklqt
       61 lsagcskted nadeendgka ltdsagkpdl qeilqkrgil gslnfdeedt eeeeaskrpv
      121 shspypeser pssatseksf aetgascsps pqadvqlgev enledfalrp aprgitvkcr
      181 itrdkkgmdr glfptyymhl erednrktfl lagrkrkksk tsnylisvdp tdlsregesf
      241 igklrsnlmg tkftvydhgv spvkaqglve kahmrqelaa icyetnvlgf kgprkmsvii
      301 pgmnvnhkri pvhprnehes llskwqnkdl enlielhnka pvwnddtqsy vlnfhgrvtq
      361 asvknfqivh dndpdyivmq fgrvaedvft ldynyplcal qafaiglssf dsklace
//
LOCUS       XP_053922739             478 aa            linear   VRT 09-MAR-2023
DEFINITION  transcriptional enhancer factor TEF-3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053922739
VERSION     XP_053922739.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066764.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..478
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..478
                     /product="transcriptional enhancer factor TEF-3 isoform
                     X1"
                     /calculated_mol_wt=53089
     Region          83..150
                     /region_name="TEA"
                     /note="TEA domain; smart00426"
                     /db_xref="CDD:128703"
     Region          266..475
                     /region_name="YBD"
                     /note="YAP binding domain; pfam17725"
                     /db_xref="CDD:435993"
     CDS             1..478
                     /gene="TEAD4"
                     /coded_by="XM_054066764.1:318..1754"
                     /db_xref="GeneID:104060664"
ORIGIN      
        1 meavvaapvg kgrpapgfgd avafsigrkp lalpegsesa slrgtlefla gtitsnewss
       61 ptspegsnds ggsealdkpi dndaegvwsp dieqsfqeal aiyppcgrrk iilsdegkmy
      121 grneliaryi klrtgktrtr kqvsshiqvl arrkareiqa klkdqaakdk amqsmatmss
      181 aqiisatafh skmalpglpr paypavsgfw qgplpgqags sqdvkpfcqq pyavqpplpl
      241 pgfesptgls pspsapawqg rrvassklwm lefsafleqq qdqdtynkhl fvhigqssps
      301 yndpyleavd irqiydkfpe kkgglkelfe rgpanafflv kfwadlntni edesrsfygv
      361 ssqyespenm vitcstkvcs fgkqvvekve teyaryengh ysyrihrspl ceyminfihk
      421 lkhlpekymm nsvlenftil qvvtnrdtqe tllciayvfe vstsdhgaqh hiyrlvkd
//
LOCUS       XP_053922745             465 aa            linear   VRT 09-MAR-2023
DEFINITION  transcriptional enhancer factor TEF-3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053922745
VERSION     XP_053922745.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066770.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..465
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..465
                     /product="transcriptional enhancer factor TEF-3 isoform
                     X2"
                     /calculated_mol_wt=51845
     Region          83..150
                     /region_name="TEA"
                     /note="TEA domain; smart00426"
                     /db_xref="CDD:128703"
     Region          253..462
                     /region_name="YBD"
                     /note="YAP binding domain; pfam17725"
                     /db_xref="CDD:435993"
     CDS             1..465
                     /gene="TEAD4"
                     /coded_by="XM_054066770.1:318..1715"
                     /db_xref="GeneID:104060664"
ORIGIN      
        1 meavvaapvg kgrpapgfgd avafsigrkp lalpegsesa slrgtlefla gtitsnewss
       61 ptspegsnds ggsealdkpi dndaegvwsp dieqsfqeal aiyppcgrrk iilsdegkmy
      121 grneliaryi klrtgktrtr kqvsshiqvl arrkareiqa klkdqaakdk amqsmatmss
      181 aqiisatafh skmalpglpr paypavsgfw qgplpgqags sqdvkpfcqq pyavqpplpl
      241 papawqgrrv assklwmlef safleqqqdq dtynkhlfvh igqsspsynd pyleavdirq
      301 iydkfpekkg glkelfergp anafflvkfw adlntniede srsfygvssq yespenmvit
      361 cstkvcsfgk qvvekvetey aryenghysy rihrsplcey minfihklkh lpekymmnsv
      421 lenftilqvv tnrdtqetll ciayvfevst sdhgaqhhiy rlvkd
//
LOCUS       XP_053922755             460 aa            linear   VRT 09-MAR-2023
DEFINITION  transcriptional enhancer factor TEF-3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053922755
VERSION     XP_053922755.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066780.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..460
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..460
                     /product="transcriptional enhancer factor TEF-3 isoform
                     X3"
                     /calculated_mol_wt=50980
     Region          83..150
                     /region_name="TEA"
                     /note="TEA domain; smart00426"
                     /db_xref="CDD:128703"
     Region          266..442
                     /region_name="YBD"
                     /note="YAP binding domain; pfam17725"
                     /db_xref="CDD:435993"
     CDS             1..460
                     /gene="TEAD4"
                     /coded_by="XM_054066780.1:318..1700"
                     /db_xref="GeneID:104060664"
ORIGIN      
        1 meavvaapvg kgrpapgfgd avafsigrkp lalpegsesa slrgtlefla gtitsnewss
       61 ptspegsnds ggsealdkpi dndaegvwsp dieqsfqeal aiyppcgrrk iilsdegkmy
      121 grneliaryi klrtgktrtr kqvsshiqvl arrkareiqa klkdqaakdk amqsmatmss
      181 aqiisatafh skmalpglpr paypavsgfw qgplpgqags sqdvkpfcqq pyavqpplpl
      241 pgfesptgls pspsapawqg rrvassklwm lefsafleqq qdqdtynkhl fvhigqssps
      301 yndpyleavd irqiydkfpe kkgglkelfe rgpanafflv kfwadlntni edesrsfygv
      361 ssqyespenm vitcstkvcs fgkqvvekve teyaryengh ysyrihrspl ceyminfihk
      421 lkhlpekymm nsvlenftil qvknvtpcfl cgkkntnkqq
//
LOCUS       XP_053922764             458 aa            linear   VRT 09-MAR-2023
DEFINITION  transcriptional enhancer factor TEF-3 isoform X4 [Cuculus canorus].
ACCESSION   XP_053922764
VERSION     XP_053922764.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066789.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..458
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..458
                     /product="transcriptional enhancer factor TEF-3 isoform
                     X4"
                     /calculated_mol_wt=50948
     Region          83..150
                     /region_name="TEA"
                     /note="TEA domain; smart00426"
                     /db_xref="CDD:128703"
     Region          266..443
                     /region_name="YBD"
                     /note="YAP binding domain; pfam17725"
                     /db_xref="CDD:435993"
     CDS             1..458
                     /gene="TEAD4"
                     /coded_by="XM_054066789.1:318..1694"
                     /db_xref="GeneID:104060664"
ORIGIN      
        1 meavvaapvg kgrpapgfgd avafsigrkp lalpegsesa slrgtlefla gtitsnewss
       61 ptspegsnds ggsealdkpi dndaegvwsp dieqsfqeal aiyppcgrrk iilsdegkmy
      121 grneliaryi klrtgktrtr kqvsshiqvl arrkareiqa klkdqaakdk amqsmatmss
      181 aqiisatafh skmalpglpr paypavsgfw qgplpgqags sqdvkpfcqq pyavqpplpl
      241 pgfesptgls pspsapawqg rrvassklwm lefsafleqq qdqdtynkhl fvhigqssps
      301 yndpyleavd irqiydkfpe kkgglkelfe rgpanafflv kfwadlntni edesrsfygv
      361 ssqyespenm vitcstkvcs fgkqvvekve teyaryengh ysyrihrspl ceyminfihk
      421 lkhlpekymm nsvlenftil qpifpwffdi ldeieeha
//
LOCUS       XP_053922775             276 aa            linear   VRT 09-MAR-2023
DEFINITION  RAD9, HUS1, RAD1-interacting nuclear orphan protein 1 [Cuculus
            canorus].
ACCESSION   XP_053922775
VERSION     XP_053922775.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066800.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..276
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..276
                     /product="RAD9, HUS1, RAD1-interacting nuclear orphan
                     protein 1"
                     /calculated_mol_wt=30988
     Region          1..263
                     /region_name="RHINO"
                     /note="RAD9, RAD1, HUS1-interacting nuclear orphan
                     protein; pfam15319"
                     /db_xref="CDD:464642"
     CDS             1..276
                     /gene="RHNO1"
                     /coded_by="XM_054066800.1:262..1092"
                     /db_xref="GeneID:104060663"
ORIGIN      
        1 mppkkkrthk arkaellfle rpregpvqcy eapllstenp rrvptkpvdq ntsaawvcsq
       61 fetaksvvlk tctkhrgtck pqnwnashsl shageacrra tackfppltf enpeghafqs
      121 lgcpnhlmkn mqsfhnqpkk gtaakaniqv nslencreih slpasqsaep evfsppdvet
      181 prtppirnwg rtstlqqtss dvwhsekela fsvdpcgrre paavlvadtp eheygvkvtw
      241 rrrpqlmkyl reteklsaad ilvkvnlels rrqtdv
//
LOCUS       XP_053922790             661 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-dependent DNA helicase Q1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053922790
VERSION     XP_053922790.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066815.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..661
                     /product="ATP-dependent DNA helicase Q1 isoform X1"
                     /calculated_mol_wt=74324
     Region          83..543
                     /region_name="recQ_fam"
                     /note="ATP-dependent DNA helicase, RecQ family; TIGR00614"
                     /db_xref="CDD:129701"
     CDS             1..661
                     /gene="RECQL"
                     /coded_by="XM_054066815.1:365..2350"
                     /db_xref="GeneID:104058534"
ORIGIN      
        1 maavavleev lasienelqa vemqiqelvd kqqeliqkkm rvknlikess gdleaggskd
       61 tktsaeswnk kdfpwyekik telqntfklq kfrslqletv naamagedif lvmptgggks
      121 lcyqlpavcs dgftlvicpl islmedqlmv leqlgvsatl lnassskehv kwvhtemlnr
      181 nsqlkllyvt pekiakskmf msklekayqa gclariavde vhccsqwghd frpdykslgi
      241 lkrqfpnvpl igltatatnh vlkdaqkilh vqkcitftas fnrpnlyyev rhkpsnnedf
      301 iedivkling rykglsgivy cfsqkdseqv tvslqklgik agtyhanmda kyktkvhkgw
      361 aanqiqvvva tvafgmgidk pdvrfvihhs msksmenyyq esgragrddq kadcilyygf
      421 gdifrissmv vmenvgqekl ydmvsycqdm nkcrrvliah hfdevwdsan cnkmcdnccr
      481 ensyekmdit gycrdlvkil eqaenmsekl tplklidaws gkgvskfrva evtppkhpre
      541 eleriiahll lqqylkedfs ftafatisyi kigpkagllk neahvitlqg itnkksvhkn
      601 klsqssnpkg nrdnaqaisk iaqdsagkks qelkrpnsga nlkakklklq asgddqlvvl
      661 d
//
LOCUS       XP_053922800             584 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-dependent DNA helicase Q1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053922800
VERSION     XP_053922800.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066825.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..584
                     /product="ATP-dependent DNA helicase Q1 isoform X2"
                     /calculated_mol_wt=65284
     Region          83..>405
                     /region_name="recQ_fam"
                     /note="ATP-dependent DNA helicase, RecQ family; TIGR00614"
                     /db_xref="CDD:129701"
     Region          407..508
                     /region_name="RQC"
                     /note="RQC domain; pfam09382"
                     /db_xref="CDD:462780"
     CDS             1..584
                     /gene="RECQL"
                     /coded_by="XM_054066825.1:365..2119"
                     /db_xref="GeneID:104058534"
ORIGIN      
        1 maavavleev lasienelqa vemqiqelvd kqqeliqkkm rvknlikess gdleaggskd
       61 tktsaeswnk kdfpwyekik telqntfklq kfrslqletv naamagedif lvmptgggks
      121 lcyqlpavcs dgftlvicpl islmedqlmv leqlgvsatl lnassskehv kwvhtemlnr
      181 nsqlkllyvt pekiakskmf msklekayqa gclariavde vhccsqwghd frpdykslgi
      241 lkrqfpnvpl igltatatnh vlkdaqkilh vqkcitftas fnrpnlyyev rhkpsnnedf
      301 iedivkling rykglsgivy cfsqkdseqv tvslqklgik agtyhanmda kyktkvhkgw
      361 aanqiqvvva tvafgmgidk pdvrfvihhs msksmenyyq esgraayekm ditgycrdlv
      421 kileqaenms ekltplklid awsgkgvskf rvaevtppkh preeleriia hlllqqylke
      481 dfsftafati syikigpkag llkneahvit lqgitnkksv hknklsqssn pkgnrdnaqa
      541 iskiaqdsag kksqelkrpn sganlkakkl klqasgddql vvld
//
LOCUS       XP_009558366             499 aa            linear   VRT 09-MAR-2023
DEFINITION  pyridine nucleotide-disulfide oxidoreductase domain-containing
            protein 1 [Cuculus canorus].
ACCESSION   XP_009558366
VERSION     XP_009558366.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560071.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009558366.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..499
                     /product="pyridine nucleotide-disulfide oxidoreductase
                     domain-containing protein 1"
                     /calculated_mol_wt=55584
     Region          9..496
                     /region_name="NirB"
                     /note="NAD(P)H-nitrite reductase, large subunit [Energy
                     production and conversion]; COG1251"
                     /db_xref="CDD:440863"
     CDS             1..499
                     /gene="PYROXD1"
                     /coded_by="XM_009560071.2:90..1589"
                     /db_xref="GeneID:104058535"
ORIGIN      
        1 maaapvvprt rfavvgggia gvtcaeklam efpsedilli taspvikavt nfkqvsktle
       61 efdveeqpss ilekryhnik viqsgvkqlk sdehkilted gkeymyeklc lcagakpkli
      121 vegnpyvlgi rdtdsakafq knlaqsqriv vvgnggiale lvyeiqgcev iwaikdkaig
      181 ntffdagaae fliqkltaen retpieckrt kyttegneek erlaaasdkl gsalgpdwhe
      241 glhlkgtkef shkvhieilc evkkiylqqe fiqlqrtslt fpkeeknvep devlwpvyve
      301 ltngkiygcd fivsatgvvp nvkpfldgnn favgedgglk vdkhmhtslp diyaagdict
      361 aswepspvwh qmrlwtqarq mgwyaakcma adtlgesidm dfsfelfahv tkffnykvvv
      421 lgkynaqglg ldhelmlrct kgqeyvkvvm qngrmmgavl igetdleetf enlilnqmdl
      481 saygedllnp didiedyfd
//
LOCUS       XP_053922822             536 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-taxilin [Cuculus canorus].
ACCESSION   XP_053922822
VERSION     XP_053922822.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066847.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..536
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..536
                     /product="gamma-taxilin"
                     /calculated_mol_wt=60825
     Region          151..458
                     /region_name="Taxilin"
                     /note="Myosin-like coiled-coil protein; pfam09728"
                     /db_xref="CDD:462861"
     CDS             1..536
                     /gene="TXLNG"
                     /coded_by="XM_054066847.1:45..1655"
                     /db_xref="GeneID:104063393"
ORIGIN      
        1 matrgaeaar gggsssggta aaprarrhsg eeedeevaaa psgspqlvgg ameeaasqem
       61 gmnnqdqlvn srcnelsdta lqhahsnccs lenmgaleea eyitkhrthp gsmccsqesr
      121 eetpgreart dppdgqqdpe sekhkektlg kevlllmqal ntlstpeekl aalckkyadl
      181 leesrnvqkq mkilqkkqaq vvkekvhlqs ehskailars kleslcrelq rhnktlkegn
      241 iqlardeeek rkeatahfqi tlneieaqle qhgihnaklr qenielgekl kklieqyalr
      301 eehidkvfkh kelqqqlvda klqqttqlik eaeekhqrer efllkeates rhkceqmkqq
      361 eaqlkqqlsl ymdkfeefqt tmaksnelft tfrqemekmt kkikkleket ivwrtkwenn
      421 nkallqmaee ktvrdkeykg fqiklerlek lcralqtern elnekvevlk eqvslreadv
      481 dlavqvlqsc tlnsheelgt ptdmepgiqp dvescaanss ektvsaspvp stesvd
//
LOCUS       XP_009563854             424 aa            linear   VRT 09-MAR-2023
DEFINITION  histone-binding protein RBBP7 [Cuculus canorus].
ACCESSION   XP_009563854
VERSION     XP_009563854.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565559.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..424
                     /product="histone-binding protein RBBP7"
                     /calculated_mol_wt=47483
     Region          18..87
                     /region_name="CAF1C_H4-bd"
                     /note="Histone-binding protein RBBP4 or subunit C of CAF1
                     complex; pfam12265"
                     /db_xref="CDD:463513"
     Region          121..401
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cl29593"
                     /db_xref="CDD:475233"
     Site            order(121,140,144,150..151,173..174,193,197,203..204,
                     223..224,241,247,253..254,270,288,293,299..300,313..314,
                     332,337,343..344,349..350,367,370..371,390,394,400..401)
                     /site_type="active"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     Region          126..173
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          178..222
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          229..268
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          274..312
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          318..369
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          375..400
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..424
                     /gene="RBBP7"
                     /coded_by="XM_009565559.2:215..1489"
                     /db_xref="GeneID:104063392"
ORIGIN      
        1 maskevledt veerviseey kiwkkntpfl ydlvmthale wpsltvqwlp dvtrpegkdy
       61 alhwlvlgth tsdeqnhlvv arvqipnddq fdaaqydsek gefggfgsvt grieteikin
      121 hegevnrary mpqnpciiat ktpsadvlvf dytkhpskpd psgecnpdlr lrghqkegyg
      181 lswnsnlsgh llsasddhtv clwdisagpk egkivdakai ftghcavved vawhllhesl
      241 fgsvaddqkl miwdtrsntt skpshsvdah taevnclsfn pysefilatg sadktvalwd
      301 lrnlklklhs feshkdeifq vhwsphneti lassgtdrrl nvwdlskige eqsaedaedg
      361 ppellfihgg htakisdfsw npnepwvics vsednimqiw qmaeniynde epdiaaaele
      421 gqgt
//
LOCUS       XP_053922849            1327 aa            linear   VRT 09-MAR-2023
DEFINITION  vascular endothelial growth factor receptor 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053922849
VERSION     XP_053922849.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066874.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1327
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1327
                     /product="vascular endothelial growth factor receptor 1
                     isoform X1"
                     /calculated_mol_wt=148596
     Region          30..106
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     Region          226..326
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          244..248
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409448"
     Region          259..263
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409448"
     Region          290..294
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409448"
     Region          304..309
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409448"
     Region          317..320
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409448"
     Region          329..420
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          349..353
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409499"
     Region          362..366
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409499"
     Region          384..388
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409499"
     Region          398..403
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409499"
     Region          413..416
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409499"
     Region          446..450
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409367"
     Region          <448..548
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          459..463
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409367"
     Region          505..518
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409367"
     Region          528..533
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409367"
     Region          541..544
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409367"
     Region          565..630
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          569..573
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409404"
     Region          582..586
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409404"
     Region          609..613
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409404"
     Region          623..628
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409404"
     Region          651..738
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          668..672
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409405"
     Region          681..685
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409405"
     Region          704..708
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409405"
     Region          718..723
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409405"
     Region          731..734
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409405"
     Region          811..1150
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(825..828,831,833,851,853,884,901..904,1015,
                     1019..1020,1022,1032..1033)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270870"
     CDS             1..1327
                     /gene="FLT1"
                     /coded_by="XM_054066874.1:227..4210"
                     /db_xref="GeneID:104064234"
ORIGIN      
        1 mprqllsgtv llgaalllag sssgsklkvp elsingaqhv vqagqtlnlt crgemvhsws
       61 lpetlskdsk rlkvikyacg rngkqscssl tlsrtqasdt gnysckypts pakkkkestv
      121 yvfindtgsp fvemhsdipk iihmtvgrem iipcrvtapn iavtlkkipr eslipdgeti
      181 iwdsmkgfri pratykfigl lscettisgh kystkylthr etntifdvql stprlvkllk
      241 gdslainctv taawntrvqm twtypgeark rgsvmqridq knteanifys ilvidkvrdi
      301 dkgqytchvk sgpsikavnt tvivydkmfi nlkrrrktal eavagrksyr lsmkvkafps
      361 peviwlkdgl pasekcarym akdysliikd vaeedagnyt iilsirqwnl sknhtvtltv
      421 nvkpqiyena vssfpdpnly llnskqvltc tvygipqpki twmwypcrqn hsktrhgfcs
      481 ytegsfilka gsnignkiqs isertavieg knktastlvv aeakssgiys cvasnkvgka
      541 ernvsfivtd vpsgfhisla kmpiegenli lscsankfly kdiawilprt vnnqtkakrs
      601 lnkeysitlt ltiknvslah sgtyacrarn iytgkevlqk kdvtiraqea pallrhlmdq
      661 tvntsnsaml ecqvhgipep qitwfknhee iqqesgiilg pgsrmlfier vkeddeglyq
      721 ciatnlkgsv esaayvtvqg tsersnleli tltctcvaat lfwllltlfi rklkrpysse
      781 mktnhylsii mdpdevplde qcerlpydas kweiarerlk lgkslghgaf gkvvqasafg
      841 ikksstcriv avkmlkegat aseykalmte lkilihighh lnivnllgac tknggplmvi
      901 veyckygnls nylkskrnff cpnkdsslqg epkkekkdie pvegkkqrla svtssesfas
      961 sgfqedksls dveedeedad elyklpltle dlisysfqva rgmeflssrk cihrdlaarn
     1021 illsennvvk icdfglardi ynnpdyvrkg darlplkwma pesifdkiyn tksdvwsygv
     1081 llweifslga spypgvqide dfcsklkegt rmrapeqate eiyqimldcw qsnpndrprf
     1141 selvkklgdl lqanvqqegk dyiplntift tesgfppasd hrgnenfsvt ssscgstenv
     1201 ryintfnikp pqriktfeel pikktlvfsd yqvdsgmvla peelkrftwt gskqkrtlfg
     1261 vnvasrskes vlsgitkprs fcsfscdqls dskrrytcgn mvlekmktch spppdynslv
     1321 lysqppv
//
LOCUS       XP_053922857             669 aa            linear   VRT 09-MAR-2023
DEFINITION  vascular endothelial growth factor receptor 1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053922857
VERSION     XP_053922857.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066882.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..669
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..669
                     /product="vascular endothelial growth factor receptor 1
                     isoform X2"
                     /calculated_mol_wt=74382
     Region          30..106
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     Region          226..326
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          244..248
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409448"
     Region          259..263
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409448"
     Region          290..294
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409448"
     Region          304..309
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409448"
     Region          317..320
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409448"
     Region          329..420
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          349..353
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409499"
     Region          362..366
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409499"
     Region          384..388
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409499"
     Region          398..403
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409499"
     Region          413..416
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409499"
     Region          446..450
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409367"
     Region          <448..548
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          459..463
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409367"
     Region          505..518
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409367"
     Region          528..533
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409367"
     Region          541..544
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409367"
     Region          565..630
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          569..573
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409404"
     Region          582..586
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409404"
     Region          609..613
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409404"
     Region          623..628
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409404"
     CDS             1..669
                     /gene="FLT1"
                     /coded_by="XM_054066882.1:227..2236"
                     /db_xref="GeneID:104064234"
ORIGIN      
        1 mprqllsgtv llgaalllag sssgsklkvp elsingaqhv vqagqtlnlt crgemvhsws
       61 lpetlskdsk rlkvikyacg rngkqscssl tlsrtqasdt gnysckypts pakkkkestv
      121 yvfindtgsp fvemhsdipk iihmtvgrem iipcrvtapn iavtlkkipr eslipdgeti
      181 iwdsmkgfri pratykfigl lscettisgh kystkylthr etntifdvql stprlvkllk
      241 gdslainctv taawntrvqm twtypgeark rgsvmqridq knteanifys ilvidkvrdi
      301 dkgqytchvk sgpsikavnt tvivydkmfi nlkrrrktal eavagrksyr lsmkvkafps
      361 peviwlkdgl pasekcarym akdysliikd vaeedagnyt iilsirqwnl sknhtvtltv
      421 nvkpqiyena vssfpdpnly llnskqvltc tvygipqpki twmwypcrqn hsktrhgfcs
      481 ytegsfilka gsnignkiqs isertavieg knktastlvv aeakssgiys cvasnkvgka
      541 ernvsfivtd vpsgfhisla kmpiegenli lscsankfly kdiawilprt vnnqtkakrs
      601 lnkeysitlt ltiknvslah sgtyacrarn iytgkevlqk kdvtirgpev vhispwagrr
      661 rsskqnrna
//
LOCUS       XP_053922868             941 aa            linear   VRT 09-MAR-2023
DEFINITION  receptor-type tyrosine-protein kinase FLT3 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053922868
VERSION     XP_053922868.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066893.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..941
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..941
                     /product="receptor-type tyrosine-protein kinase FLT3
                     isoform X1"
                     /calculated_mol_wt=107032
     Region          260..349
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          352..439
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          370..374
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409446"
     Region          383..387
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409446"
     Region          412..415
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409446"
     Region          419..424
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409446"
     Region          432..435
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409446"
     Region          580..941
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(624..627,630,632,650,652,683,699..702,834,838..839,
                     841,851..852)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270870"
     CDS             1..941
                     /gene="FLT3"
                     /coded_by="XM_054066893.1:75..2900"
                     /db_xref="GeneID:104064233"
ORIGIN      
        1 mavgwpcgrp agslfhlavl lmtavtftsa mkqnasdikc lrinqkdegs gtpwssvspk
       61 tsnvledlec ylnsqgreni yeptknvevn vfedielrvi mnisdiiscf wlfkdskack
      121 pslnsenqyv tslafsqike tqagkytlsv isktgsytvv mtvlirkkpg kpyfrkrens
      181 daiecisesy pqpsvewifc ktpekscpdk mheenreidg iqkvhqesfq tyiwccavnd
      241 lgrectslft idlnerraap lpelllkvge pllircravy hnykfgikls fenkeiekdh
      301 qfegleyqpn gsairtqyaf tsvaersnsg hytcsstvhp nqtalvtvle kgfinitnsk
      361 edfeigeeef cfevnftayp pvrcvwlffr ktfpckqsys vdgrsfssrf cnhqhqsgiy
      421 ifyaenddav ttkeftlyvr rkpavtmqsl fnqisciavs ypasswvwrn cpklnssnct
      481 eeitegihsf lperrslgsw isssaldvke ttttfslecc annsagsaca kksfvnlpva
      541 gavssppdsa afyvsvgffl lliaflfvfi fhkykkqfry esqlqmiqmi gpldneyiyi
      601 dfrefeydlk wefprenlef gqvlgsgafg kvvnataygi ssagdsvpva vkmlkekpda
      661 sekdalmsel kmmthigshe nivnllgact vsgpiylife yccygdllny lrskrekfhw
      721 tltdifkqhn fsfyhnicle qnsregthlt ygvnmtlcre defeitqgsq nmnvtygsng
      781 ialnseedkt khasrqmdee edlnvltfed llcfsyqvak gmeflesksc ihrdlaarni
      841 lvthgkvvki cdfglardim ndsnyivrgn arlpvkwmap eslfnrtytm ksdvwsygil
      901 lweifslgvn pypgiqvdtn fykliqsgfk mdrpyyatkd v
//
LOCUS       XP_053922876             831 aa            linear   VRT 09-MAR-2023
DEFINITION  receptor-type tyrosine-protein kinase FLT3 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053922876
VERSION     XP_053922876.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066901.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..831
                     /product="receptor-type tyrosine-protein kinase FLT3
                     isoform X2"
                     /calculated_mol_wt=94383
     Region          260..349
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          352..439
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          370..374
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409446"
     Region          383..387
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409446"
     Region          412..415
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409446"
     Region          419..424
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409446"
     Region          432..435
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409446"
     Region          580..>829
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     CDS             1..831
                     /gene="FLT3"
                     /coded_by="XM_054066901.1:75..2570"
                     /db_xref="GeneID:104064233"
ORIGIN      
        1 mavgwpcgrp agslfhlavl lmtavtftsa mkqnasdikc lrinqkdegs gtpwssvspk
       61 tsnvledlec ylnsqgreni yeptknvevn vfedielrvi mnisdiiscf wlfkdskack
      121 pslnsenqyv tslafsqike tqagkytlsv isktgsytvv mtvlirkkpg kpyfrkrens
      181 daiecisesy pqpsvewifc ktpekscpdk mheenreidg iqkvhqesfq tyiwccavnd
      241 lgrectslft idlnerraap lpelllkvge pllircravy hnykfgikls fenkeiekdh
      301 qfegleyqpn gsairtqyaf tsvaersnsg hytcsstvhp nqtalvtvle kgfinitnsk
      361 edfeigeeef cfevnftayp pvrcvwlffr ktfpckqsys vdgrsfssrf cnhqhqsgiy
      421 ifyaenddav ttkeftlyvr rkpavtmqsl fnqisciavs ypasswvwrn cpklnssnct
      481 eeitegihsf lperrslgsw isssaldvke ttttfslecc annsagsaca kksfvnlpva
      541 gavssppdsa afyvsvgffl lliaflfvfi fhkykkqfry esqlqmiqmi gpldneyiyi
      601 dfrefeydlk wefprenlef gqvlgsgafg kvvnataygi ssagdsvpva vkmlkekpda
      661 sekdalmsel kmmthigshe nivnllgact vsgpiylife yccygdllny lrskrekfhw
      721 tltdifkqhn fsfyhnicle qnsregthlt ygvnmtlcre defeitqgsq nmnvtygsng
      781 ialnseedkt khasrqmdee edlnvltfed llcfsyqvak gmeflesksv w
//
LOCUS       XP_053922890             882 aa            linear   VRT 09-MAR-2023
DEFINITION  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053922890
VERSION     XP_053922890.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066915.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..882
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..882
                     /product="PAN2-PAN3 deadenylation complex subunit PAN3
                     isoform X1"
                     /calculated_mol_wt=95602
     Region          45..64
                     /region_name="zf-CCCH"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     pfam00642"
                     /db_xref="CDD:459885"
     Region          489..>657
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(494..497,500,502,515,517,545,563..566,636,640..641,
                     643,653..654)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270870"
     Region          737..874
                     /region_name="Pan3_PK"
                     /note="Pan3 Pseudokinase domain; pfam18101"
                     /db_xref="CDD:465649"
     CDS             1..882
                     /gene="PAN3"
                     /coded_by="XM_054066915.1:105..2753"
                     /db_xref="GeneID:104064165"
ORIGIN      
        1 mnssglpcss pspvvgpplp avavaagpaa aggagaggav klkfcryyak dktcfygeec
       61 qflheepgaa palplgiapa afpqhgaspg paaaalgatk kpelgtgggg gldgprlpip
      121 gidggglada sltdsyfsts figvngfgsp aetkypmmqr vtnsssspsl lndsakqyag
      181 hdpltspnss lfndfaalsv sqrrklakpa fpsfisdled ryntvlprky rlgmlderiv
      241 pvgskarktk npigcladrc ktgvpinmvw wnrvtennlq tpnpsasefi pkggstsrls
      301 nvsqssvsaf sqalfshpsm ggpataglap gmslsagssp lhspkitpht spaprrrsht
      361 pnpanymvpt sasasvnnav sqppstgqvi qketvggtty fytdttpapl tgmvfpnyhi
      421 yhpaaphvay mqpkanapsf fmadelrqel inrhlitmaq idqadvpvpa evdsyhslfp
      481 leplpppnri qktsnfgyit scykavnskd dlpyclrrih gfrlvntkcm vlvdmwkkiq
      541 hsnivtlrev fttkafgehs lvfaydfhag getmmsrhfn dpsadayftk rkwgqhdgpl
      601 prqhagllpe sliwayivql ssalrtihta glacrvmdpt kilvtgktrl rvncvgifdv
      661 ltfdnsqnnp lalmaqfqqa dlislgkvvl alacnslsgi qrenlqkame lvtinyssdl
      721 knlilylltd qnrlrsvndi mpmigarfyt qldaaqmrnd vieedlakev qngrlfrlla
      781 klgtinerpe fqkdptwset gdryllklfr dhlfhqvtea gtpwidlshi isclnkldag
      841 vpekislisr deksvlvvty sdlkrcfent fqeliaaang ql
//
LOCUS       XP_053922901             850 aa            linear   VRT 09-MAR-2023
DEFINITION  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053922901
VERSION     XP_053922901.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066926.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..850
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..850
                     /product="PAN2-PAN3 deadenylation complex subunit PAN3
                     isoform X2"
                     /calculated_mol_wt=92068
     Region          45..64
                     /region_name="zf-CCCH"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     pfam00642"
                     /db_xref="CDD:459885"
     Region          490..>658
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(495..498,501,503,516,518,546,564..567,637,641..642,
                     644,654..655)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270870"
     Region          738..>837
                     /region_name="Pan3_PK"
                     /note="Pan3 Pseudokinase domain; pfam18101"
                     /db_xref="CDD:465649"
     CDS             1..850
                     /gene="PAN3"
                     /coded_by="XM_054066926.1:105..2657"
                     /db_xref="GeneID:104064165"
ORIGIN      
        1 mnssglpcss pspvvgpplp avavaagpaa aggagaggav klkfcryyak dktcfygeec
       61 qflheepgaa palplgiapa afpqhgaspg paaaalgatk kpelgtgggg gldgprlpip
      121 gidggglada sltdsyfsts figvngfgsp aetkypmmqr vtnsssspsl lndsakqyag
      181 hdpltspnss lfndfaalsv sqrrklakpa fpsfisdled ryntvlprky rlgmlderiv
      241 pvgskarktk npigcladrc ktgvpinmvw wnrvtennlq tpnpsasefi pkggstsrls
      301 nvsqssvsaf sqalfshpsm ggpataglap gmslsagssp lhspkitpht spaprrrsht
      361 pnpanymvpt sasasvnnav sqppstgqvi qketvggtty fytdttpapl tgmvfpnyhi
      421 yhpaaphvay mqpkanapsf fmadelrqel inrhlitmaq idqadvpavp aevdsyhslf
      481 pleplpppnr iqktsnfgyi tscykavnsk ddlpyclrri hgfrlvntkc mvlvdmwkki
      541 qhsnivtlre vfttkafgeh slvfaydfha ggetmmsrhf ndpsadayft krkwgqhdgp
      601 lprqhagllp esliwayivq lssalrtiht aglacrvmdp tkilvtgktr lrvncvgifd
      661 vltfdnsqnn plalmaqfqq adlislgkvv lalacnslsg iqrenlqkam elvtinyssd
      721 lknlilyllt dqnrlrsvnd impmigarfy tqldaaqmrn dvieedlake vqngrlfrll
      781 aklgtinerp efqkdptwse tgdryllklf rdhlfhqvte agtpwidlsh iisclnkeer
      841 ekaisidvcs
//
LOCUS       XP_053922912             850 aa            linear   VRT 09-MAR-2023
DEFINITION  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053922912
VERSION     XP_053922912.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066937.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..850
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..850
                     /product="PAN2-PAN3 deadenylation complex subunit PAN3
                     isoform X2"
                     /calculated_mol_wt=92068
     Region          45..64
                     /region_name="zf-CCCH"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     pfam00642"
                     /db_xref="CDD:459885"
     Region          490..>658
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(495..498,501,503,516,518,546,564..567,637,641..642,
                     644,654..655)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270870"
     Region          738..>837
                     /region_name="Pan3_PK"
                     /note="Pan3 Pseudokinase domain; pfam18101"
                     /db_xref="CDD:465649"
     CDS             1..850
                     /gene="PAN3"
                     /coded_by="XM_054066937.1:105..2657"
                     /db_xref="GeneID:104064165"
ORIGIN      
        1 mnssglpcss pspvvgpplp avavaagpaa aggagaggav klkfcryyak dktcfygeec
       61 qflheepgaa palplgiapa afpqhgaspg paaaalgatk kpelgtgggg gldgprlpip
      121 gidggglada sltdsyfsts figvngfgsp aetkypmmqr vtnsssspsl lndsakqyag
      181 hdpltspnss lfndfaalsv sqrrklakpa fpsfisdled ryntvlprky rlgmlderiv
      241 pvgskarktk npigcladrc ktgvpinmvw wnrvtennlq tpnpsasefi pkggstsrls
      301 nvsqssvsaf sqalfshpsm ggpataglap gmslsagssp lhspkitpht spaprrrsht
      361 pnpanymvpt sasasvnnav sqppstgqvi qketvggtty fytdttpapl tgmvfpnyhi
      421 yhpaaphvay mqpkanapsf fmadelrqel inrhlitmaq idqadvpavp aevdsyhslf
      481 pleplpppnr iqktsnfgyi tscykavnsk ddlpyclrri hgfrlvntkc mvlvdmwkki
      541 qhsnivtlre vfttkafgeh slvfaydfha ggetmmsrhf ndpsadayft krkwgqhdgp
      601 lprqhagllp esliwayivq lssalrtiht aglacrvmdp tkilvtgktr lrvncvgifd
      661 vltfdnsqnn plalmaqfqq adlislgkvv lalacnslsg iqrenlqkam elvtinyssd
      721 lknlilyllt dqnrlrsvnd impmigarfy tqldaaqmrn dvieedlake vqngrlfrll
      781 aklgtinerp efqkdptwse tgdryllklf rdhlfhqvte agtpwidlsh iisclnkeer
      841 ekaisidvcs
//
LOCUS       XP_053922921             829 aa            linear   VRT 09-MAR-2023
DEFINITION  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053922921
VERSION     XP_053922921.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066946.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..829
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..829
                     /product="PAN2-PAN3 deadenylation complex subunit PAN3
                     isoform X3"
                     /calculated_mol_wt=89466
     Region          45..64
                     /region_name="zf-CCCH"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     pfam00642"
                     /db_xref="CDD:459885"
     Region          436..>604
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(441..444,447,449,462,464,492,510..513,583,587..588,
                     590,600..601)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270870"
     Region          684..821
                     /region_name="Pan3_PK"
                     /note="Pan3 Pseudokinase domain; pfam18101"
                     /db_xref="CDD:465649"
     CDS             1..829
                     /gene="PAN3"
                     /coded_by="XM_054066946.1:105..2594"
                     /db_xref="GeneID:104064165"
ORIGIN      
        1 mnssglpcss pspvvgpplp avavaagpaa aggagaggav klkfcryyak dktcfygeec
       61 qflheepgaa palplgiapa afpqhgaspg paaaalgatk kpelgtgggg gldgprlpip
      121 gidggglada sltdsyfsts figvngfgsp aetkypmmqr vtnsssspsl lndsakqyag
      181 hdpltspnss lfndfaalsv sqrrklakpa fpsfisdled ryntvltpnp sasefipkgg
      241 stsrlsnvsq ssvsafsqal fshpsmggpa taglapgmsl sagssplhsp kitphtspap
      301 rrrshtpnpa nymvptsasa svnnavsqpp stgqviqket vggttyfytd ttpapltgmv
      361 fpnyhiyhpa aphvaymqpk anapsffmad elrqelinrh litmaqidqa dvpavpaevd
      421 syhslfplep lpppnriqkt snfgyitscy kavnskddlp yclrrihgfr lvntkcmvlv
      481 dmwkkiqhsn ivtlrevftt kafgehslvf aydfhagget mmsrhfndps adayftkrkw
      541 gqhdgplprq hagllpesli wayivqlssa lrtihtagla crvmdptkil vtgktrlrvn
      601 cvgifdvltf dnsqnnplal maqfqqadli slgkvvlala cnslsgiqre nlqkamelvt
      661 inyssdlknl ilylltdqnr lrsvndimpm igarfytqld aaqmrndvie edlakevqng
      721 rlfrllaklg tinerpefqk dptwsetgdr yllklfrdhl fhqvteagtp widlshiisc
      781 lnkldagvpe kislisrdek svlvvtysdl krcfentfqe liaaangql
//
LOCUS       XP_053922929             883 aa            linear   VRT 09-MAR-2023
DEFINITION  PAN2-PAN3 deadenylation complex subunit PAN3 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053922929
VERSION     XP_053922929.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066954.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..883
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..883
                     /product="PAN2-PAN3 deadenylation complex subunit PAN3
                     isoform X4"
                     /calculated_mol_wt=95673
     Region          45..64
                     /region_name="zf-CCCH"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     pfam00642"
                     /db_xref="CDD:459885"
     Region          490..>658
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(495..498,501,503,516,518,546,564..567,637,641..642,
                     644,654..655)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270870"
     Region          738..875
                     /region_name="Pan3_PK"
                     /note="Pan3 Pseudokinase domain; pfam18101"
                     /db_xref="CDD:465649"
     CDS             1..883
                     /gene="PAN3"
                     /coded_by="XM_054066954.1:110..2761"
                     /db_xref="GeneID:104064165"
ORIGIN      
        1 mnssglpcss pspvvgpplp avavaagpaa aggagaggav klkfcryyak dktcfygeec
       61 qflheepgaa palplgiapa afpqhgaspg paaaalgatk kpelgtgggg gldgprlpip
      121 gidggglada sltdsyfsts figvngfgsp aetkypmmqr vtnsssspsl lndsakqyag
      181 hdpltspnss lfndfaalsv sqrrklakpa fpsfisdled ryntvlprky rlgmlderiv
      241 pvgskarktk npigcladrc ktgvpinmvw wnrvtennlq tpnpsasefi pkggstsrls
      301 nvsqssvsaf sqalfshpsm ggpataglap gmslsagssp lhspkitpht spaprrrsht
      361 pnpanymvpt sasasvnnav sqppstgqvi qketvggtty fytdttpapl tgmvfpnyhi
      421 yhpaaphvay mqpkanapsf fmadelrqel inrhlitmaq idqadvpavp aevdsyhslf
      481 pleplpppnr iqktsnfgyi tscykavnsk ddlpyclrri hgfrlvntkc mvlvdmwkki
      541 qhsnivtlre vfttkafgeh slvfaydfha ggetmmsrhf ndpsadayft krkwgqhdgp
      601 lprqhagllp esliwayivq lssalrtiht aglacrvmdp tkilvtgktr lrvncvgifd
      661 vltfdnsqnn plalmaqfqq adlislgkvv lalacnslsg iqrenlqkam elvtinyssd
      721 lknlilyllt dqnrlrsvnd impmigarfy tqldaaqmrn dvieedlake vqngrlfrll
      781 aklgtinerp efqkdptwse tgdryllklf rdhlfhqvte agtpwidlsh iisclnklda
      841 gvpekislis rdeksvlvvt ysdlkrcfen tfqeliaaan gql
//
LOCUS       XP_053922943             772 aa            linear   VRT 09-MAR-2023
DEFINITION  semaphorin-3A [Cuculus canorus].
ACCESSION   XP_053922943
VERSION     XP_053922943.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066968.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..772
                     /product="semaphorin-3A"
                     /calculated_mol_wt=88704
     Region          26..518
                     /region_name="Sema_3A"
                     /note="The Sema domain, a protein interacting module, of
                     semaphorin 3A (Sema3A); cd11249"
                     /db_xref="CDD:200510"
     Site            order(104..107,166..167,171,192,194..195,202,212,215..216,
                     218,223,252,276..280,282,397,401,404)
                     /site_type="other"
                     /note="putative plexin binding site [polypeptide binding]"
                     /db_xref="CDD:200510"
     Site            order(253..254,256,259..261,295,298..299,301,303,307,
                     330..337,363..366,410,425)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:200510"
     Region          516..>552
                     /region_name="PSI"
                     /note="domain found in Plexins, Semaphorins and Integrins;
                     smart00423"
                     /db_xref="CDD:214655"
     Region          580..671
                     /region_name="Ig_Sema3"
                     /note="Immunoglobulin (Ig)-like domain of class III
                     semaphorin Sema3; cd05871"
                     /db_xref="CDD:409455"
     Region          580..586
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409455"
     Region          591..599
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409455"
     Site            order(593,638)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:409455"
     Region          605..611
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409455"
     Region          613..616
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409455"
     Region          626..630
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409455"
     Region          633..640
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409455"
     Region          646..655
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409455"
     Region          658..671
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409455"
     CDS             1..772
                     /gene="SEMA3A"
                     /coded_by="XM_054066968.1:282..2600"
                     /db_xref="GeneID:104066043"
ORIGIN      
        1 mgwlrgiall slgvllagrv ncqhvknnvp rlklsykeml esnniinfng lansssyhtf
       61 lldeersrly vgakdhifsf nlvnikeyqk ivwpvshsrr deckwagkdi lrecanfikv
      121 lkaynqthly acgtgafhpv cayievgshp ednifrmeds hfengrgksp ydpklltasl
      181 lvdgelysgt aadfmgrdfa ifrtlghhhp irteqhdsrw lndprfisah lipesdnped
      241 dkiyfffren aidgehtgka tharigqick ndfgghrslv nkwttflkar licsvpgpng
      301 idthfdelqd vflmnskdpk npivygvftt ssnifkgsav cmysmtdvrr vflgpyahrd
      361 gpnyqwvpyq grvpyprpgt cpsktfggfd stkdlpdevi tfarshpamy npvfpinnrp
      421 imiktdvdyq ftqivvdrvd aedgqydvmf igtdvgtvlk vvsipketwh eleevlleei
      481 tvfreptvis amkistkqqq lyigsatgvs qlplhrcdvy gkacaeccla rdpycawdgs
      541 scsryfptak rrtrrqdirn gdplthcsdl qhhdnpsgqt leekiiygve nsstflecsp
      601 ksqravvywq fqkqnddrke eikvddhmir teqglllrsl qrrdsgiyfc havehgfmqt
      661 llkvtlevid tdhleellhk eedgdasktk datnsmtpsq kiwyrdfmql inhpnlntmd
      721 efceqvwkrd rkqrrqrpan tqvntnkwkh lqenkkgrnr rtheferapr sv
//
LOCUS       XP_053922951             772 aa            linear   VRT 09-MAR-2023
DEFINITION  semaphorin-3A [Cuculus canorus].
ACCESSION   XP_053922951
VERSION     XP_053922951.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066976.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..772
                     /product="semaphorin-3A"
                     /calculated_mol_wt=88704
     Region          26..518
                     /region_name="Sema_3A"
                     /note="The Sema domain, a protein interacting module, of
                     semaphorin 3A (Sema3A); cd11249"
                     /db_xref="CDD:200510"
     Site            order(104..107,166..167,171,192,194..195,202,212,215..216,
                     218,223,252,276..280,282,397,401,404)
                     /site_type="other"
                     /note="putative plexin binding site [polypeptide binding]"
                     /db_xref="CDD:200510"
     Site            order(253..254,256,259..261,295,298..299,301,303,307,
                     330..337,363..366,410,425)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:200510"
     Region          516..>552
                     /region_name="PSI"
                     /note="domain found in Plexins, Semaphorins and Integrins;
                     smart00423"
                     /db_xref="CDD:214655"
     Region          580..671
                     /region_name="Ig_Sema3"
                     /note="Immunoglobulin (Ig)-like domain of class III
                     semaphorin Sema3; cd05871"
                     /db_xref="CDD:409455"
     Region          580..586
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409455"
     Region          591..599
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409455"
     Site            order(593,638)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:409455"
     Region          605..611
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409455"
     Region          613..616
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409455"
     Region          626..630
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409455"
     Region          633..640
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409455"
     Region          646..655
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409455"
     Region          658..671
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409455"
     CDS             1..772
                     /gene="SEMA3A"
                     /coded_by="XM_054066976.1:176..2494"
                     /db_xref="GeneID:104066043"
ORIGIN      
        1 mgwlrgiall slgvllagrv ncqhvknnvp rlklsykeml esnniinfng lansssyhtf
       61 lldeersrly vgakdhifsf nlvnikeyqk ivwpvshsrr deckwagkdi lrecanfikv
      121 lkaynqthly acgtgafhpv cayievgshp ednifrmeds hfengrgksp ydpklltasl
      181 lvdgelysgt aadfmgrdfa ifrtlghhhp irteqhdsrw lndprfisah lipesdnped
      241 dkiyfffren aidgehtgka tharigqick ndfgghrslv nkwttflkar licsvpgpng
      301 idthfdelqd vflmnskdpk npivygvftt ssnifkgsav cmysmtdvrr vflgpyahrd
      361 gpnyqwvpyq grvpyprpgt cpsktfggfd stkdlpdevi tfarshpamy npvfpinnrp
      421 imiktdvdyq ftqivvdrvd aedgqydvmf igtdvgtvlk vvsipketwh eleevlleei
      481 tvfreptvis amkistkqqq lyigsatgvs qlplhrcdvy gkacaeccla rdpycawdgs
      541 scsryfptak rrtrrqdirn gdplthcsdl qhhdnpsgqt leekiiygve nsstflecsp
      601 ksqravvywq fqkqnddrke eikvddhmir teqglllrsl qrrdsgiyfc havehgfmqt
      661 llkvtlevid tdhleellhk eedgdasktk datnsmtpsq kiwyrdfmql inhpnlntmd
      721 efceqvwkrd rkqrrqrpan tqvntnkwkh lqenkkgrnr rtheferapr sv
//
LOCUS       XP_053922961             772 aa            linear   VRT 09-MAR-2023
DEFINITION  semaphorin-3A [Cuculus canorus].
ACCESSION   XP_053922961
VERSION     XP_053922961.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054066986.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..772
                     /product="semaphorin-3A"
                     /calculated_mol_wt=88704
     Region          26..518
                     /region_name="Sema_3A"
                     /note="The Sema domain, a protein interacting module, of
                     semaphorin 3A (Sema3A); cd11249"
                     /db_xref="CDD:200510"
     Site            order(104..107,166..167,171,192,194..195,202,212,215..216,
                     218,223,252,276..280,282,397,401,404)
                     /site_type="other"
                     /note="putative plexin binding site [polypeptide binding]"
                     /db_xref="CDD:200510"
     Site            order(253..254,256,259..261,295,298..299,301,303,307,
                     330..337,363..366,410,425)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:200510"
     Region          516..>552
                     /region_name="PSI"
                     /note="domain found in Plexins, Semaphorins and Integrins;
                     smart00423"
                     /db_xref="CDD:214655"
     Region          580..671
                     /region_name="Ig_Sema3"
                     /note="Immunoglobulin (Ig)-like domain of class III
                     semaphorin Sema3; cd05871"
                     /db_xref="CDD:409455"
     Region          580..586
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409455"
     Region          591..599
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409455"
     Site            order(593,638)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:409455"
     Region          605..611
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409455"
     Region          613..616
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409455"
     Region          626..630
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409455"
     Region          633..640
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409455"
     Region          646..655
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409455"
     Region          658..671
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409455"
     CDS             1..772
                     /gene="SEMA3A"
                     /coded_by="XM_054066986.1:365..2683"
                     /db_xref="GeneID:104066043"
ORIGIN      
        1 mgwlrgiall slgvllagrv ncqhvknnvp rlklsykeml esnniinfng lansssyhtf
       61 lldeersrly vgakdhifsf nlvnikeyqk ivwpvshsrr deckwagkdi lrecanfikv
      121 lkaynqthly acgtgafhpv cayievgshp ednifrmeds hfengrgksp ydpklltasl
      181 lvdgelysgt aadfmgrdfa ifrtlghhhp irteqhdsrw lndprfisah lipesdnped
      241 dkiyfffren aidgehtgka tharigqick ndfgghrslv nkwttflkar licsvpgpng
      301 idthfdelqd vflmnskdpk npivygvftt ssnifkgsav cmysmtdvrr vflgpyahrd
      361 gpnyqwvpyq grvpyprpgt cpsktfggfd stkdlpdevi tfarshpamy npvfpinnrp
      421 imiktdvdyq ftqivvdrvd aedgqydvmf igtdvgtvlk vvsipketwh eleevlleei
      481 tvfreptvis amkistkqqq lyigsatgvs qlplhrcdvy gkacaeccla rdpycawdgs
      541 scsryfptak rrtrrqdirn gdplthcsdl qhhdnpsgqt leekiiygve nsstflecsp
      601 ksqravvywq fqkqnddrke eikvddhmir teqglllrsl qrrdsgiyfc havehgfmqt
      661 llkvtlevid tdhleellhk eedgdasktk datnsmtpsq kiwyrdfmql inhpnlntmd
      721 efceqvwkrd rkqrrqrpan tqvntnkwkh lqenkkgrnr rtheferapr sv
//
LOCUS       XP_053922991             464 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier family 46 member 3 [Cuculus canorus].
ACCESSION   XP_053922991
VERSION     XP_053922991.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067016.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..464
                     /product="solute carrier family 46 member 3"
                     /calculated_mol_wt=50908
     Region          4..439
                     /region_name="MFS_SLC46A3"
                     /note="Solute carrier family 46 member 3 of the Major
                     Facilitator Superfamily of transporters; cd17448"
                     /db_xref="CDD:341006"
     Site            order(14..15,18..19,22,89,143..144,146..148,151,174,
                     177..178,181,269,272..273,276..278,281,310,314,362..363,
                     367,371,387,390..391,394..395,398)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:341006"
     CDS             1..464
                     /gene="SLC46A3"
                     /coded_by="XM_054067016.1:165..1559"
                     /db_xref="GeneID:104064167"
ORIGIN      
        1 mrkvlcvepv ifiyifassl tsplvqqfiy rrlwqdlynt tnisdasash ceqnqsspty
       61 ikqkevqeka svfnmqldlt gavpslivaf vivangdrqg rkrslvlpsm galiadiclt
      121 iisyfsfsls ilfavafitg lfgsvatflg ggfafiadvc hdekqkttri avvdlifgvv
      181 sglaglssgy flrgigftwt fvtasllhli niiyilfile dtvgvselqh qtpvsftell
      241 retfsgvyml fktapykkri liivllftfm tylftvfggs slftlyelde plcwnevyig
      301 ygaaaftsvs ltsflgvylf skclkdiyiv figifsyigg mvmaafaktt llmflvrvps
      361 llcimpvpvl rsmlskvvlp deqgavfaci aclevvtgti slsvfnilya atvawfsgfs
      421 fllsaglcli plaalcwllc tnwngedlal lvpeevssie sads
//
LOCUS       XP_053922996             464 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier family 46 member 3 [Cuculus canorus].
ACCESSION   XP_053922996
VERSION     XP_053922996.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067021.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..464
                     /product="solute carrier family 46 member 3"
                     /calculated_mol_wt=50908
     Region          4..439
                     /region_name="MFS_SLC46A3"
                     /note="Solute carrier family 46 member 3 of the Major
                     Facilitator Superfamily of transporters; cd17448"
                     /db_xref="CDD:341006"
     Site            order(14..15,18..19,22,89,143..144,146..148,151,174,
                     177..178,181,269,272..273,276..278,281,310,314,362..363,
                     367,371,387,390..391,394..395,398)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:341006"
     CDS             1..464
                     /gene="SLC46A3"
                     /coded_by="XM_054067021.1:211..1605"
                     /db_xref="GeneID:104064167"
ORIGIN      
        1 mrkvlcvepv ifiyifassl tsplvqqfiy rrlwqdlynt tnisdasash ceqnqsspty
       61 ikqkevqeka svfnmqldlt gavpslivaf vivangdrqg rkrslvlpsm galiadiclt
      121 iisyfsfsls ilfavafitg lfgsvatflg ggfafiadvc hdekqkttri avvdlifgvv
      181 sglaglssgy flrgigftwt fvtasllhli niiyilfile dtvgvselqh qtpvsftell
      241 retfsgvyml fktapykkri liivllftfm tylftvfggs slftlyelde plcwnevyig
      301 ygaaaftsvs ltsflgvylf skclkdiyiv figifsyigg mvmaafaktt llmflvrvps
      361 llcimpvpvl rsmlskvvlp deqgavfaci aclevvtgti slsvfnilya atvawfsgfs
      421 fllsaglcli plaalcwllc tnwngedlal lvpeevssie sads
//
LOCUS       XP_053923005             464 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier family 46 member 3 [Cuculus canorus].
ACCESSION   XP_053923005
VERSION     XP_053923005.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067030.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..464
                     /product="solute carrier family 46 member 3"
                     /calculated_mol_wt=50908
     Region          4..439
                     /region_name="MFS_SLC46A3"
                     /note="Solute carrier family 46 member 3 of the Major
                     Facilitator Superfamily of transporters; cd17448"
                     /db_xref="CDD:341006"
     Site            order(14..15,18..19,22,89,143..144,146..148,151,174,
                     177..178,181,269,272..273,276..278,281,310,314,362..363,
                     367,371,387,390..391,394..395,398)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:341006"
     CDS             1..464
                     /gene="SLC46A3"
                     /coded_by="XM_054067030.1:30..1424"
                     /db_xref="GeneID:104064167"
ORIGIN      
        1 mrkvlcvepv ifiyifassl tsplvqqfiy rrlwqdlynt tnisdasash ceqnqsspty
       61 ikqkevqeka svfnmqldlt gavpslivaf vivangdrqg rkrslvlpsm galiadiclt
      121 iisyfsfsls ilfavafitg lfgsvatflg ggfafiadvc hdekqkttri avvdlifgvv
      181 sglaglssgy flrgigftwt fvtasllhli niiyilfile dtvgvselqh qtpvsftell
      241 retfsgvyml fktapykkri liivllftfm tylftvfggs slftlyelde plcwnevyig
      301 ygaaaftsvs ltsflgvylf skclkdiyiv figifsyigg mvmaafaktt llmflvrvps
      361 llcimpvpvl rsmlskvvlp deqgavfaci aclevvtgti slsvfnilya atvawfsgfs
      421 fllsaglcli plaalcwllc tnwngedlal lvpeevssie sads
//
LOCUS       XP_053923020             179 aa            linear   VRT 09-MAR-2023
DEFINITION  proteasome maturation protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053923020
VERSION     XP_053923020.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067045.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..179
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..179
                     /product="proteasome maturation protein isoform X1"
                     /calculated_mol_wt=20038
     Region          63..176
                     /region_name="UMP1"
                     /note="Proteasome maturation factor UMP1; pfam05348"
                     /db_xref="CDD:461627"
     CDS             1..179
                     /gene="POMP"
                     /coded_by="XM_054067045.1:307..846"
                     /db_xref="GeneID:104064235"
ORIGIN      
        1 mwapqahcca lrallcgvfh gfllmfdfrg dlplchvsqn srgassllkd tipitefsas
       61 gpfeghdllr rgftsvknel mpshplelse knfqlnqdkt nfdtlrniqg ihaplklqme
      121 fravkqvqrl pflhssnial dtlrgnaeci gfedilndps qsevmgephm mmeyklgll
//
LOCUS       XP_053923030             141 aa            linear   VRT 09-MAR-2023
DEFINITION  proteasome maturation protein isoform X2 [Cuculus canorus].
ACCESSION   XP_053923030
VERSION     XP_053923030.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067055.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..141
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..141
                     /product="proteasome maturation protein isoform X2"
                     /calculated_mol_wt=15782
     Region          25..138
                     /region_name="UMP1"
                     /note="Proteasome maturation factor UMP1; pfam05348"
                     /db_xref="CDD:461627"
     CDS             1..141
                     /gene="POMP"
                     /coded_by="XM_054067055.1:131..556"
                     /db_xref="GeneID:104064235"
ORIGIN      
        1 mnsrgassll kdtipitefs asgpfeghdl lrrgftsvkn elmpshplel seknfqlnqd
       61 ktnfdtlrni qgihaplklq mefravkqvq rlpflhssni aldtlrgnae cigfedilnd
      121 psqsevmgep hmmmeyklgl l
//
LOCUS       XP_053923044             930 aa            linear   VRT 09-MAR-2023
DEFINITION  MICAL-like protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053923044
VERSION     XP_053923044.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067069.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..930
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..930
                     /product="MICAL-like protein 1 isoform X1"
                     /calculated_mol_wt=100999
     Region          4..110
                     /region_name="CH_MICALL1"
                     /note="calponin homology (CH) domain found in MICAL-like
                     protein 1; cd21252"
                     /db_xref="CDD:409101"
     Site            order(4,8,58,60..61,64..65,67,76..84,92,94..95,97..98,
                     101..102,105)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409101"
     Region          167..221
                     /region_name="LIM_Mical_like_1"
                     /note="This domain belongs to the LIM domain family which
                     are found on Mical (molecule interacting with CasL) like
                     proteins; cd09444"
                     /db_xref="CDD:188828"
     Site            order(167,170,188,191,194,197,217,220)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188828"
     Region          <234..729
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          754..875
                     /region_name="bMERB_dom"
                     /note="Bivalent Mical/EHBP Rab binding domain; pfam12130"
                     /db_xref="CDD:463467"
     CDS             1..930
                     /gene="MICALL1"
                     /coded_by="XM_054067069.1:52..2844"
                     /db_xref="GeneID:104065917"
ORIGIN      
        1 msgprgalqa wcrrqcegyr gveirdlsss frdglafcai lhrhrpdlld fdslskddvy
       61 ennrlafela erelgipall dpndmvsmkv pdclsimtyv sqyynyfnnp sqarvplpmk
      121 hsaaassppl lshkkpvaav esppalqdda psdpsewsqr ttlsstcaac qqhvhlvqry
      181 laegklyhrq cfrckecsst llpgsykpgs eagtfvctqh rgklamsgka errpspdrqs
      241 pelgtetead stgedthptg aevgkddgds legtaetkmp aeepagpaek dstpskaetv
      301 mppahaggga pvsqtpprpp lpskpavftq dkanslderl rdtrptpapr ratdvsvlsp
      361 pasqpvprpr stlqsegsec gpgmvngrip epsppvpkpr grpcssdrag taarakdppw
      421 malvqaepkk kpappppsgs ghetpsrtse eedgeevgka kseesksdat epkpynpfee
      481 eseeqeessa vqksmpeqeq setaaktlhp wygitptssp ktkkrpapra psasplahhp
      541 isrlshseps sstpspalsl esinsessak vlgdadeasv pkssseptvh tptatktssa
      601 dtplasvsss espaapasls tnssfsssse lasfsgeaqp stphasssis tgnlktspsr
      661 lppkpptgas ptpillasdg gagspktpss pklksscken pfnrkpspat spsakklpkg
      721 skpvrppapg hgfplikrkv qtdqyipeed iygemdaieh qldqlehrgv aleeklrsae
      781 ndspedsllv dwfklihekh mlvrheseli yifkqqnleq rqsdveyelr cllnkpekdw
      841 tdedrgrekv lmqelvtiie qrnaivncld edrqreeeed kmleamikrk efhketetes
      901 kkkgkfkpmk vlkllgnkhd skskspkeks
//
LOCUS       XP_053923050             812 aa            linear   VRT 09-MAR-2023
DEFINITION  MICAL-like protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053923050
VERSION     XP_053923050.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067075.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..812
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..812
                     /product="MICAL-like protein 1 isoform X2"
                     /calculated_mol_wt=87498
     Region          49..103
                     /region_name="LIM_Mical_like_1"
                     /note="This domain belongs to the LIM domain family which
                     are found on Mical (molecule interacting with CasL) like
                     proteins; cd09444"
                     /db_xref="CDD:188828"
     Site            order(49,52,70,73,76,79,99,102)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188828"
     Region          <116..611
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          636..757
                     /region_name="bMERB_dom"
                     /note="Bivalent Mical/EHBP Rab binding domain; pfam12130"
                     /db_xref="CDD:463467"
     CDS             1..812
                     /gene="MICALL1"
                     /coded_by="XM_054067075.1:132..2570"
                     /db_xref="GeneID:104065917"
ORIGIN      
        1 mkhsaaassp pllshkkpva avesppalqd dapsdpsews qrttlsstca acqqhvhlvq
       61 rylaegklyh rqcfrckecs stllpgsykp gseagtfvct qhrgklamsg kaerrpspdr
      121 qspelgtete adstgedthp tgaevgkddg dslegtaetk mpaeepagpa ekdstpskae
      181 tvmppahagg gapvsqtppr pplpskpavf tqdkanslde rlrdtrptpa prratdvsvl
      241 sppasqpvpr prstlqsegs ecgpgmvngr ipepsppvpk prgrpcssdr agtaarakdp
      301 pwmalvqaep kkkpapppps gsghetpsrt seeedgeevg kakseesksd atepkpynpf
      361 eeeseeqees savqksmpeq eqsetaaktl hpwygitpts spktkkrpap rapsasplah
      421 hpisrlshse pssstpspal slesinsess akvlgdadea svpksssept vhtptatkts
      481 sadtplasvs ssespaapas lstnssfsss selasfsgea qpstphasss istgnlktsp
      541 srlppkpptg asptpillas dggagspktp sspklkssck enpfnrkpsp atspsakklp
      601 kgskpvrppa pghgfplikr kvqtdqyipe ediygemdai ehqldqlehr gvaleeklrs
      661 aendspedsl lvdwfklihe khmlvrhese liyifkqqnl eqrqsdveye lrcllnkpek
      721 dwtdedrgre kvlmqelvti ieqrnaivnc ldedrqreee edkmleamik rkefhketet
      781 eskkkgkfkp mkvlkllgnk hdskskspke ks
//
LOCUS       XP_053923055             812 aa            linear   VRT 09-MAR-2023
DEFINITION  MICAL-like protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053923055
VERSION     XP_053923055.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067080.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..812
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..812
                     /product="MICAL-like protein 1 isoform X2"
                     /calculated_mol_wt=87498
     Region          49..103
                     /region_name="LIM_Mical_like_1"
                     /note="This domain belongs to the LIM domain family which
                     are found on Mical (molecule interacting with CasL) like
                     proteins; cd09444"
                     /db_xref="CDD:188828"
     Site            order(49,52,70,73,76,79,99,102)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188828"
     Region          <116..611
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          636..757
                     /region_name="bMERB_dom"
                     /note="Bivalent Mical/EHBP Rab binding domain; pfam12130"
                     /db_xref="CDD:463467"
     CDS             1..812
                     /gene="MICALL1"
                     /coded_by="XM_054067080.1:142..2580"
                     /db_xref="GeneID:104065917"
ORIGIN      
        1 mkhsaaassp pllshkkpva avesppalqd dapsdpsews qrttlsstca acqqhvhlvq
       61 rylaegklyh rqcfrckecs stllpgsykp gseagtfvct qhrgklamsg kaerrpspdr
      121 qspelgtete adstgedthp tgaevgkddg dslegtaetk mpaeepagpa ekdstpskae
      181 tvmppahagg gapvsqtppr pplpskpavf tqdkanslde rlrdtrptpa prratdvsvl
      241 sppasqpvpr prstlqsegs ecgpgmvngr ipepsppvpk prgrpcssdr agtaarakdp
      301 pwmalvqaep kkkpapppps gsghetpsrt seeedgeevg kakseesksd atepkpynpf
      361 eeeseeqees savqksmpeq eqsetaaktl hpwygitpts spktkkrpap rapsasplah
      421 hpisrlshse pssstpspal slesinsess akvlgdadea svpksssept vhtptatkts
      481 sadtplasvs ssespaapas lstnssfsss selasfsgea qpstphasss istgnlktsp
      541 srlppkpptg asptpillas dggagspktp sspklkssck enpfnrkpsp atspsakklp
      601 kgskpvrppa pghgfplikr kvqtdqyipe ediygemdai ehqldqlehr gvaleeklrs
      661 aendspedsl lvdwfklihe khmlvrhese liyifkqqnl eqrqsdveye lrcllnkpek
      721 dwtdedrgre kvlmqelvti ieqrnaivnc ldedrqreee edkmleamik rkefhketet
      781 eskkkgkfkp mkvlkllgnk hdskskspke ks
//
LOCUS       XP_009566705             222 aa            linear   VRT 09-MAR-2023
DEFINITION  UPF0193 protein EVG1 [Cuculus canorus].
ACCESSION   XP_009566705
VERSION     XP_009566705.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568410.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566705.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..222
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..222
                     /product="UPF0193 protein EVG1"
                     /calculated_mol_wt=25409
     Region          11..208
                     /region_name="UPF0193"
                     /note="Uncharacterized protein family (UPF0193);
                     pfam05250"
                     /db_xref="CDD:461601"
     CDS             1..222
                     /gene="C1H22orf23"
                     /coded_by="XM_009568410.2:48..716"
                     /db_xref="GeneID:104065876"
ORIGIN      
        1 metsergvts sagpgryspd trellramme elklthfqrr slmncvkrgd tlplqchpts
       61 skktapaala fsppvcqpcr lpakphlrpa svcqagdayt rekfrpqptr dlekekerlq
      121 nilamgkevv ehnvkrmpvq rkeeeiperd rfeelvnevq erkeflaeme algqgkkyrs
      181 ivlteisqki remeiidkmr seamreimtk dfsggnksdp rn
//
LOCUS       XP_009566706             194 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Cuculus
            canorus].
ACCESSION   XP_009566706
VERSION     XP_009566706.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568411.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566706.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..194
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..194
                     /product="DNA-directed RNA polymerases I, II, and III
                     subunit RPABC2"
                     /calculated_mol_wt=21553
     Region          93..194
                     /region_name="PLN00152"
                     /note="DNA-directed RNA polymerase; Provisional"
                     /db_xref="CDD:177755"
     CDS             1..194
                     /gene="POLR2F"
                     /coded_by="XM_009568411.2:1..585"
                     /db_xref="GeneID:104065877"
ORIGIN      
        1 mtsrraltsp wtraappvpa gtgrggssaa srrpgnsagr frlrhgrrdp evapgisvre
       61 rrwrggsmsd nednfdgddf ddveedegld dlenaeeegq enveilpsge rqqanqkrit
      121 tpymtkyera rvlgtralqi amcapvmvel egetdpllia mkelkarkip iiirrylpdg
      181 syedwgvdel iitd
//
LOCUS       XP_053923081             410 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 184B isoform X1 [Cuculus canorus].
ACCESSION   XP_053923081
VERSION     XP_053923081.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067106.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..410
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..410
                     /product="transmembrane protein 184B isoform X1"
                     /calculated_mol_wt=46146
     Region          49..322
                     /region_name="Solute_trans_a"
                     /note="Organic solute transporter Ostalpha; pfam03619"
                     /db_xref="CDD:460991"
     CDS             1..410
                     /gene="TMEM184B"
                     /coded_by="XM_054067106.1:131..1363"
                     /db_xref="GeneID:104065885"
ORIGIN      
        1 mivrtdvtaa prsgstatap avacnltckp egesptaveq piflmttaaq aisgffvwta
       61 llitchqiym hlrcyscpne qryivrilfi vpiyafdswl sllfftndqy yvyfgtvrdc
      121 yeafviynfl slcyeylgge ssimseirgk piesscvygt cclwgktysi gflrfckqat
      181 lqfcvvkplm aistvilqaf gkyqdgdfdv tsgylyvtii ynisvslaly alflfyfatr
      241 gllspyspvl kffmvksvif lsfwqgmlla ilekcgaipk ihsanvsvge gtvaagyqdf
      301 iicvemffaa ialrhaftyk vyvdkrldaq grcapmksis sslketmnph divqdaihnf
      361 spayqqytqq streqgplwr knhyvisrsh scpsarenek tlllssddef
//
LOCUS       XP_053923091             418 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 184B isoform X2 [Cuculus canorus].
ACCESSION   XP_053923091
VERSION     XP_053923091.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067116.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..418
                     /product="transmembrane protein 184B isoform X2"
                     /calculated_mol_wt=46981
     Region          49..322
                     /region_name="Solute_trans_a"
                     /note="Organic solute transporter Ostalpha; pfam03619"
                     /db_xref="CDD:460991"
     CDS             1..418
                     /gene="TMEM184B"
                     /coded_by="XM_054067116.1:264..1520"
                     /db_xref="GeneID:104065885"
ORIGIN      
        1 mivrtdvtaa prsgstatap avacnltckp egesptaveq piflmttaaq aisgffvwta
       61 llitchqiym hlrcyscpne qryivrilfi vpiyafdswl sllfftndqy yvyfgtvrdc
      121 yeafviynfl slcyeylgge ssimseirgk piesscvygt cclwgktysi gflrfckqat
      181 lqfcvvkplm aistvilqaf gkyqdgdfdv tsgylyvtii ynisvslaly alflfyfatr
      241 gllspyspvl kffmvksvif lsfwqgmlla ilekcgaipk ihsanvsvge gtvaagyqdf
      301 iicvemffaa ialrhaftyk vyvdkrldaq avpsygpygr capmksisss lketmnphdi
      361 vqdaihnfsp ayqqytqqst reqgplwrkn hyvisrshsc psarenektl llssddef
//
LOCUS       XP_053923104             149 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor MafF [Cuculus canorus].
ACCESSION   XP_053923104
VERSION     XP_053923104.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067129.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..149
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..149
                     /product="transcription factor MafF"
                     /calculated_mol_wt=16517
     Region          46..115
                     /region_name="bZIP_Maf_small"
                     /note="Basic leucine zipper (bZIP) domain of small
                     musculoaponeurotic fibrosarcoma (Maf) proteins: a
                     DNA-binding and dimerization domain; cd14717"
                     /db_xref="CDD:269865"
     Region          46..115
                     /region_name="coiled coil"
                     /note="coiled coil [structural motif]"
                     /db_xref="CDD:269865"
     Site            order(56..58,60..62,64..65,68..69,71..72)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:269865"
     Site            order(72,75..76,79..80,82..83,86..87,89..90,93,96..97,100,
                     103..104,107..108)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:269865"
     CDS             1..149
                     /gene="MAFF"
                     /coded_by="XM_054067129.1:120..569"
                     /db_xref="GeneID:104065884"
ORIGIN      
        1 maadglsska lkvkrelgen tpllsdeelm glsvrelnhh lrglskeeva rlkqrrrtlk
       61 nrgyaascrv krvcqkeelq kqkmelewev dklarenaam rleldtlrgk yealqgfart
      121 vaahgtpakv atasvitivk sgtnqaays
//
LOCUS       XP_053923112             149 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor MafF [Cuculus canorus].
ACCESSION   XP_053923112
VERSION     XP_053923112.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067137.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..149
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..149
                     /product="transcription factor MafF"
                     /calculated_mol_wt=16517
     Region          46..115
                     /region_name="bZIP_Maf_small"
                     /note="Basic leucine zipper (bZIP) domain of small
                     musculoaponeurotic fibrosarcoma (Maf) proteins: a
                     DNA-binding and dimerization domain; cd14717"
                     /db_xref="CDD:269865"
     Region          46..115
                     /region_name="coiled coil"
                     /note="coiled coil [structural motif]"
                     /db_xref="CDD:269865"
     Site            order(56..58,60..62,64..65,68..69,71..72)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:269865"
     Site            order(72,75..76,79..80,82..83,86..87,89..90,93,96..97,100,
                     103..104,107..108)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:269865"
     CDS             1..149
                     /gene="MAFF"
                     /coded_by="XM_054067137.1:112..561"
                     /db_xref="GeneID:104065884"
ORIGIN      
        1 maadglsska lkvkrelgen tpllsdeelm glsvrelnhh lrglskeeva rlkqrrrtlk
       61 nrgyaascrv krvcqkeelq kqkmelewev dklarenaam rleldtlrgk yealqgfart
      121 vaahgtpakv atasvitivk sgtnqaays
//
LOCUS       XP_053923119             149 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor MafF [Cuculus canorus].
ACCESSION   XP_053923119
VERSION     XP_053923119.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067144.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..149
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..149
                     /product="transcription factor MafF"
                     /calculated_mol_wt=16517
     Region          46..115
                     /region_name="bZIP_Maf_small"
                     /note="Basic leucine zipper (bZIP) domain of small
                     musculoaponeurotic fibrosarcoma (Maf) proteins: a
                     DNA-binding and dimerization domain; cd14717"
                     /db_xref="CDD:269865"
     Region          46..115
                     /region_name="coiled coil"
                     /note="coiled coil [structural motif]"
                     /db_xref="CDD:269865"
     Site            order(56..58,60..62,64..65,68..69,71..72)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:269865"
     Site            order(72,75..76,79..80,82..83,86..87,89..90,93,96..97,100,
                     103..104,107..108)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:269865"
     CDS             1..149
                     /gene="MAFF"
                     /coded_by="XM_054067144.1:973..1422"
                     /db_xref="GeneID:104065884"
ORIGIN      
        1 maadglsska lkvkrelgen tpllsdeelm glsvrelnhh lrglskeeva rlkqrrrtlk
       61 nrgyaascrv krvcqkeelq kqkmelewev dklarenaam rleldtlrgk yealqgfart
      121 vaahgtpakv atasvitivk sgtnqaays
//
LOCUS       XP_053923129             240 aa            linear   VRT 09-MAR-2023
DEFINITION  calcipressin-1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053923129
VERSION     XP_053923129.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067154.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..240
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..240
                     /product="calcipressin-1 isoform X1"
                     /calculated_mol_wt=26764
     Region          68..233
                     /region_name="Calcipressin"
                     /note="pfam04847"
                     /db_xref="CDD:282674"
     CDS             1..240
                     /gene="RCAN1"
                     /coded_by="XM_054067154.1:130..852"
                     /db_xref="GeneID:104064746"
ORIGIN      
        1 mesgggrgpa gldeplqlpp eeaeneeeeg alppeaetdw sfvdgemeav slrdlptati
       61 acnldprvfq dgpcrakfes lfrtydrdit fqyfksfkrv rinfsnplsa adariqlhkt
      121 eflgkeikly faqtlhigss hlappnpdkq flisppaspp vdwkqvedat pvinydllya
      181 isklgpgeky elhaatdttp svvvhvcesd qendveeetk kpkpkiiqtr rpeytpthls
//
LOCUS       XP_009565408             194 aa            linear   VRT 09-MAR-2023
DEFINITION  calcipressin-1 isoform X2 [Cuculus canorus].
ACCESSION   XP_009565408
VERSION     XP_009565408.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009567113.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..194
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..194
                     /product="calcipressin-1 isoform X2"
                     /calculated_mol_wt=22094
     Region          22..187
                     /region_name="Calcipressin"
                     /note="pfam04847"
                     /db_xref="CDD:282674"
     CDS             1..194
                     /gene="RCAN1"
                     /coded_by="XM_009567113.2:834..1418"
                     /db_xref="GeneID:104064746"
ORIGIN      
        1 mhfrnfnysf ssliacvads dvfnqaetra kfeslfrtyd rditfqyfks fkrvrinfsn
       61 plsaadariq lhkteflgke iklyfaqtlh igsshlappn pdkqflispp asppvdwkqv
      121 edatpvinyd llyaisklgp gekyelhaat dttpsvvvhv cesdqendve eetkkpkpki
      181 iqtrrpeytp thls
//
LOCUS       XP_053923148             654 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-dependent RNA helicase DDX3X [Cuculus canorus].
ACCESSION   XP_053923148
VERSION     XP_053923148.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067173.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..654
                     /product="ATP-dependent RNA helicase DDX3X"
                     /calculated_mol_wt=72130
     Region          154..404
                     /region_name="DEADc_DDX3"
                     /note="DEAD-box helicase domain of DEAD box protein 3;
                     cd18051"
                     /db_xref="CDD:350809"
     Site            order(154,164,176,194,196..198,201,219..225,341..342,377)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350809"
     Site            order(268..270,296..297,317..320,323,345,351)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:350809"
     Region          409..539
                     /region_name="SF2_C_DEAD"
                     /note="C-terminal helicase domain of the DEAD box
                     helicases; cd18787"
                     /db_xref="CDD:350174"
     Site            order(498,500,525,528..529)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350174"
     CDS             1..654
                     /gene="DDX3X"
                     /coded_by="XM_054067173.1:261..2225"
                     /db_xref="GeneID:104057480"
ORIGIN      
        1 mshvavenal sldqqfsgld lnssdsqseg sssskgryip phlrnreasr qggfdsggws
       61 ssrdkdayss fgarsdrgak psffdrgngs rggrydergr gsdydrsgfg rfdrgggnsr
      121 wcdkpdeddw skplppserl eqelfsgsnt ginfekyddi pveatgsncp phiesfsdvd
      181 mgeiimgnie ltrytrptpv qkhaipiike krdlmacaqt gsgktaafll pilsqiyadg
      241 pgdalramke ngrygrrkqy pislvlaptr elavqiyeea rkfayrsrvr pcvvyggadi
      301 gqqirdlerg chllvatpgr lvdmmergki gldfckylvl deadrmldmg fepqirrive
      361 qdtmppkgvr htmmfsatfp keiqmlardf ldeyiflavg rvgstsenit qkvvwveepd
      421 krsflldlln atgkdsltlv fvetkkgada ledflyhegy actsihgdrs qrdreealhq
      481 frsgkspilv atavaargld isnvkhvinf dlpsdieeyv hrigrtgrvg nlglatsffn
      541 drnvnitkdl ldllveakqe vpswlenmay eqhhkgggsr grskssrfsg gfgardyrts
      601 sgagsssfss srstssrpgg sgsrgfgggg yggfynsdgy ggnynsqgvd wwgn
//
LOCUS       XP_053923162             430 aa            linear   VRT 09-MAR-2023
DEFINITION  F-box/LRR-repeat protein 3 [Cuculus canorus].
ACCESSION   XP_053923162
VERSION     XP_053923162.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067187.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..430
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..430
                     /product="F-box/LRR-repeat protein 3"
                     /calculated_mol_wt=48766
     Region          36..78
                     /region_name="F-box_FBXL3"
                     /note="F-box domain found in F-box/LRR-repeat protein 3
                     (FBXL3) and similar proteins; cd22178"
                     /db_xref="CDD:438949"
     Site            order(37..39,41,45,48..49,52..53,55..57,59..66,68..69)
                     /site_type="other"
                     /note="Skp1 binding site [polypeptide binding]"
                     /db_xref="CDD:438949"
     Region          81..430
                     /region_name="FBXL3_LRR"
                     /note="Leucine-rich repeat domain of F-box/LRR-repeat
                     protein 3; cd23957"
                     /db_xref="CDD:467832"
     Site            order(84,94..95,97,99..100,103)
                     /site_type="other"
                     /note="SKP1 interface [polypeptide binding]"
                     /db_xref="CDD:467832"
     Site            order(88..93,121,147..151,183,209,256,258,260,262..264,
                     267,290,294,296,314,316,318..319,338,340..342,345,
                     366..370,391,393,395,408,425..430)
                     /site_type="other"
                     /note="CRY2 interface [polypeptide binding]"
                     /db_xref="CDD:467832"
     Region          176..201
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          202..227
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     CDS             1..430
                     /gene="FBXL3"
                     /coded_by="XM_054067187.1:217..1509"
                     /db_xref="GeneID:104054958"
ORIGIN      
        1 mkrgrktnea ssssseetae krhkvtdekv tavqspdwan llqdiilqvf qylplldrah
       61 asqvcrswnq vfhmpdlwrc fefelnqpat sylrathpel ikqiikrhsn hlqyvsfkvd
      121 sskesaeaac dilsqlvncs lktlglista rpsfmdlpks hfisaltvvf vnskslsslk
      181 iddtpvddps lkvlvannsd tlkllkmssc phvspagilc vadqchglre lalnyhllsd
      241 elllalssek hvrlehlrid vvsenpgqtq fhtiqksswd afikhspkvn lvmyfflyee
      301 efdpffryei pvthlyfgrs vskdvlgrvg mtcprlvelv vcanglrpld eeliriaerc
      361 kflsavglge cevscsafve fvkmcggrls qlsimeevli pdqkysleqi hwevskhlgr
      421 vwfpdmmptw
//
LOCUS       XP_053923169             430 aa            linear   VRT 09-MAR-2023
DEFINITION  F-box/LRR-repeat protein 3 [Cuculus canorus].
ACCESSION   XP_053923169
VERSION     XP_053923169.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067194.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..430
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..430
                     /product="F-box/LRR-repeat protein 3"
                     /calculated_mol_wt=48766
     Region          36..78
                     /region_name="F-box_FBXL3"
                     /note="F-box domain found in F-box/LRR-repeat protein 3
                     (FBXL3) and similar proteins; cd22178"
                     /db_xref="CDD:438949"
     Site            order(37..39,41,45,48..49,52..53,55..57,59..66,68..69)
                     /site_type="other"
                     /note="Skp1 binding site [polypeptide binding]"
                     /db_xref="CDD:438949"
     Region          81..430
                     /region_name="FBXL3_LRR"
                     /note="Leucine-rich repeat domain of F-box/LRR-repeat
                     protein 3; cd23957"
                     /db_xref="CDD:467832"
     Site            order(84,94..95,97,99..100,103)
                     /site_type="other"
                     /note="SKP1 interface [polypeptide binding]"
                     /db_xref="CDD:467832"
     Site            order(88..93,121,147..151,183,209,256,258,260,262..264,
                     267,290,294,296,314,316,318..319,338,340..342,345,
                     366..370,391,393,395,408,425..430)
                     /site_type="other"
                     /note="CRY2 interface [polypeptide binding]"
                     /db_xref="CDD:467832"
     Region          176..201
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          202..227
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     CDS             1..430
                     /gene="FBXL3"
                     /coded_by="XM_054067194.1:261..1553"
                     /db_xref="GeneID:104054958"
ORIGIN      
        1 mkrgrktnea ssssseetae krhkvtdekv tavqspdwan llqdiilqvf qylplldrah
       61 asqvcrswnq vfhmpdlwrc fefelnqpat sylrathpel ikqiikrhsn hlqyvsfkvd
      121 sskesaeaac dilsqlvncs lktlglista rpsfmdlpks hfisaltvvf vnskslsslk
      181 iddtpvddps lkvlvannsd tlkllkmssc phvspagilc vadqchglre lalnyhllsd
      241 elllalssek hvrlehlrid vvsenpgqtq fhtiqksswd afikhspkvn lvmyfflyee
      301 efdpffryei pvthlyfgrs vskdvlgrvg mtcprlvelv vcanglrpld eeliriaerc
      361 kflsavglge cevscsafve fvkmcggrls qlsimeevli pdqkysleqi hwevskhlgr
      421 vwfpdmmptw
//
LOCUS       XP_053923184             330 aa            linear   VRT 09-MAR-2023
DEFINITION  ceroid-lipofuscinosis neuronal protein 5 [Cuculus canorus].
ACCESSION   XP_053923184
VERSION     XP_053923184.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067209.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..330
                     /product="ceroid-lipofuscinosis neuronal protein 5"
                     /calculated_mol_wt=38286
     Region          30..321
                     /region_name="CLN5"
                     /note="Ceroid-lipofuscinosis neuronal protein 5;
                     pfam15014"
                     /db_xref="CDD:464446"
     CDS             1..330
                     /gene="CLN5"
                     /coded_by="XM_054067209.1:4..996"
                     /db_xref="GeneID:104054969"
ORIGIN      
        1 mvaarwslll lvavgpcfsg tqrrwpvpyr rfdyrpktdp ycqarytfcp tgsaipivke
       61 edvievyrlq apvwefkygd llghlkimhd avgfkssltg knytmewyel fqlgnctfph
      121 lrpgmdapfw cnqgaacfye giddahwken gtlvlvttis gtmfnemakw vkhdnetgiy
      181 yetwtvqasp dkqstvwfds yecskfilrt yqkladlgav frkiktnyts iilfsgepiy
      241 lgnetsifgp lgnktlaaai rdfyypfkpy rtvgeffadl lkiidrvilk hqfylfynle
      301 ywflsmkfpy lkivyeeipl pvrsktafgv
//
LOCUS       XP_053923197             456 aa            linear   VRT 09-MAR-2023
DEFINITION  N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D isoform
            X1 [Cuculus canorus].
ACCESSION   XP_053923197
VERSION     XP_053923197.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067222.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..456
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..456
                     /product="N-acyl-phosphatidylethanolamine-hydrolyzing
                     phospholipase D isoform X1"
                     /calculated_mol_wt=51879
     Region          192..379
                     /region_name="metallo-hydrolase-like_MBL-fold"
                     /note="mainly hydrolytic enzymes and related proteins
                     which carry out various biological functions; MBL-fold
                     metallohydrolase domain; cl23716"
                     /db_xref="CDD:451500"
     Site            order(248,250,252..253,326..327,347,379)
                     /site_type="active"
                     /db_xref="CDD:293792"
     CDS             1..456
                     /gene="NAPEPLD"
                     /coded_by="XM_054067222.1:16..1386"
                     /db_xref="GeneID:104061747"
ORIGIN      
        1 margrallaa lrgrgscrrg rsgpmeevae gegeaaperl rrgrgaahll qrgsprgssq
       61 kdmdkkmdde qsltacnqyp kevvrkrqns grgsrgsdss rtsrksfrld yrleedvtks
      121 krgkdgrfvn pwptwksptf pnvlkwslme knnsnvpcsk qeldkelpvl kpyfiqkpel
      181 agktgtgmrv twlghasvmv emdelifltd pifsqraspt qlmgpkrfrg ppctvqqlpk
      241 idavvishth ydhldyntvt slnqrfgsel rwfvplglld wmqrcgcenv ieldwweenc
      301 vpghdavtfv ftpsqhwckr tatddnkvlw gswsvlgpwn rfffagdtgy cvafeqigkr
      361 fgpfdlaaip igayeprwfm kyqhvdpeea vrihidvqak ksvavhwgtf alaneyyldp
      421 pvklnealer yglkkddffv lnhgesrdls tndgfe
//
LOCUS       XP_053923205             394 aa            linear   VRT 09-MAR-2023
DEFINITION  N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D isoform
            X2 [Cuculus canorus].
ACCESSION   XP_053923205
VERSION     XP_053923205.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067230.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..394
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..394
                     /product="N-acyl-phosphatidylethanolamine-hydrolyzing
                     phospholipase D isoform X2"
                     /calculated_mol_wt=45300
     Region          130..317
                     /region_name="metallo-hydrolase-like_MBL-fold"
                     /note="mainly hydrolytic enzymes and related proteins
                     which carry out various biological functions; MBL-fold
                     metallohydrolase domain; cl23716"
                     /db_xref="CDD:451500"
     Site            order(186,188,190..191,264..265,285,317)
                     /site_type="active"
                     /db_xref="CDD:293792"
     CDS             1..394
                     /gene="NAPEPLD"
                     /coded_by="XM_054067230.1:197..1381"
                     /db_xref="GeneID:104061747"
ORIGIN      
        1 mdkkmddeqs ltacnqypke vvrkrqnsgr gsrgsdssrt srksfrldyr leedvtkskr
       61 gkdgrfvnpw ptwksptfpn vlkwslmekn nsnvpcskqe ldkelpvlkp yfiqkpelag
      121 ktgtgmrvtw lghasvmvem delifltdpi fsqrasptql mgpkrfrgpp ctvqqlpkid
      181 avvishthyd hldyntvtsl nqrfgselrw fvplglldwm qrcgcenvie ldwweencvp
      241 ghdavtfvft psqhwckrta tddnkvlwgs wsvlgpwnrf ffagdtgycv afeqigkrfg
      301 pfdlaaipig ayeprwfmky qhvdpeeavr ihidvqakks vavhwgtfal aneyyldppv
      361 klnealeryg lkkddffvln hgesrdlstn dgfe
//
LOCUS       XP_053923211             394 aa            linear   VRT 09-MAR-2023
DEFINITION  N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D isoform
            X2 [Cuculus canorus].
ACCESSION   XP_053923211
VERSION     XP_053923211.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067236.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..394
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..394
                     /product="N-acyl-phosphatidylethanolamine-hydrolyzing
                     phospholipase D isoform X2"
                     /calculated_mol_wt=45300
     Region          130..317
                     /region_name="metallo-hydrolase-like_MBL-fold"
                     /note="mainly hydrolytic enzymes and related proteins
                     which carry out various biological functions; MBL-fold
                     metallohydrolase domain; cl23716"
                     /db_xref="CDD:451500"
     Site            order(186,188,190..191,264..265,285,317)
                     /site_type="active"
                     /db_xref="CDD:293792"
     CDS             1..394
                     /gene="NAPEPLD"
                     /coded_by="XM_054067236.1:108..1292"
                     /db_xref="GeneID:104061747"
ORIGIN      
        1 mdkkmddeqs ltacnqypke vvrkrqnsgr gsrgsdssrt srksfrldyr leedvtkskr
       61 gkdgrfvnpw ptwksptfpn vlkwslmekn nsnvpcskqe ldkelpvlkp yfiqkpelag
      121 ktgtgmrvtw lghasvmvem delifltdpi fsqrasptql mgpkrfrgpp ctvqqlpkid
      181 avvishthyd hldyntvtsl nqrfgselrw fvplglldwm qrcgcenvie ldwweencvp
      241 ghdavtfvft psqhwckrta tddnkvlwgs wsvlgpwnrf ffagdtgycv afeqigkrfg
      301 pfdlaaipig ayeprwfmky qhvdpeeavr ihidvqakks vavhwgtfal aneyyldppv
      361 klnealeryg lkkddffvln hgesrdlstn dgfe
//
LOCUS       XP_053923224             297 aa            linear   VRT 09-MAR-2023
DEFINITION  armadillo repeat-containing protein 10 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053923224
VERSION     XP_053923224.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067249.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..297
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..297
                     /product="armadillo repeat-containing protein 10 isoform
                     X1"
                     /calculated_mol_wt=32641
     Region          52..263
                     /region_name="Arm_2"
                     /note="Armadillo-like; pfam04826"
                     /db_xref="CDD:461447"
     Region          55..80
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Site            order(69..70,73,76..77,80,110..111,114,117..118,122,
                     151..152,155,158..159,190..191,194,197..198)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:293787"
     Region          90..123
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          132..159
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          170..199
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     CDS             1..297
                     /gene="ARMC10"
                     /coded_by="XM_054067249.1:1..894"
                     /db_xref="GeneID:104061748"
ORIGIN      
        1 mwgrrgamaa aavlaalgag awyclgrrgl raapradnsl passhamdmd tlqklihllq
       61 atddpliqeq alitlsnsaa fsvnqdvirn ldglsviggm lsdcvpkvke kalnalnnls
      121 mniknqeeiq vyitqvcrni esaplnsdlq laglrlltnm svtsdyhhkm insipcflhl
      181 lsegtertqi qvlkvlvnls anpamtrhll raqvpsllll fdtrinrdil lralalaanl
      241 kknvdnedgt viqdqyseds ifftlcrdst qfaqklasll hhpdtevkeq vvriltq
//
LOCUS       XP_053923234             251 aa            linear   VRT 09-MAR-2023
DEFINITION  armadillo repeat-containing protein 10 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053923234
VERSION     XP_053923234.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067259.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..251
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..251
                     /product="armadillo repeat-containing protein 10 isoform
                     X2"
                     /calculated_mol_wt=27978
     Region          1..33
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     Region          6..217
                     /region_name="Arm_2"
                     /note="Armadillo-like; pfam04826"
                     /db_xref="CDD:461447"
     Region          39..73
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     CDS             1..251
                     /gene="ARMC10"
                     /coded_by="XM_054067259.1:80..835"
                     /db_xref="GeneID:104061748"
ORIGIN      
        1 mdmdtlqkli hllqatddpl iqeqalitls nsaafsvnqd virnldglsv iggmlsdcvp
       61 kvkekalnal nnlsmniknq eeiqvyitqv crniesapln sdlqlaglrl ltnmsvtsdy
      121 hhkminsipc flhllsegte rtqiqvlkvl vnlsanpamt rhllraqvps llllfdtrin
      181 rdillralal aanlkknvdn edgtviqdqy sedsifftlc rdstqfaqkl asllhhpdte
      241 vkeqvvrilt q
//
LOCUS       XP_053923245            2028 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear mitotic apparatus protein 1 [Cuculus canorus].
ACCESSION   XP_053923245
VERSION     XP_053923245.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067270.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2028
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2028
                     /product="nuclear mitotic apparatus protein 1"
                     /calculated_mol_wt=232146
     Region          6..151
                     /region_name="HkD_NuMA"
                     /note="Hook domain found in nuclear mitotic apparatus
                     protein (NuMA) and similar proteins; cd22224"
                     /db_xref="CDD:411795"
     Site            order(108,122,125..126,128..129,132..133,136)
                     /site_type="other"
                     /note="putative LIC-binding interface [polypeptide
                     binding]"
                     /db_xref="CDD:411795"
     Region          194..>433
                     /region_name="EnvC"
                     /note="Septal ring factor EnvC, activator of murein
                     hydrolases AmiA and AmiB [Cell cycle control, cell
                     division, chromosome partitioning]; COG4942"
                     /db_xref="CDD:443969"
     Region          <326..>894
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          <793..1575
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          1782..1837
                     /region_name="NuMA_LGNBD"
                     /note="LGN binding domain (LGNBD) of nuclear mitotic
                     apparatus protein (NuMA) and similar proteins; cd22298"
                     /db_xref="CDD:412093"
     Site            order(1782,1785..1790,1807..1809,1812..1813,1815,
                     1817..1821,1825..1830,1832)
                     /site_type="other"
                     /note="LGN binding site [polypeptide binding]"
                     /db_xref="CDD:412093"
     CDS             1..2028
                     /gene="NUMA1"
                     /coded_by="XM_054067270.1:299..6385"
                     /db_xref="GeneID:104062205"
ORIGIN      
        1 mplhgprata llawvnstkv fpdplqeltq lrdcgifiri ihqlhrsegv elilekslpe
       61 risfirgflq kqgkhrsaae nlvsaqelld geelalakva vlllyhtsms srsptdwnaf
      121 dyetqvelas ilrfvldnee sldenlemfl qkkaplpssg gssseehspl lshkrevrfl
      181 elqriasssn tnniftgaps spmgdvlqtp qfqlrrmkkq laverenrde levelaenrk
      241 lltekeaqit vmqqridrlt llrenpsadq peakemeelr eknesltlrl hdalrhcqdl
      301 ktekgqmdrk inqlseengd lsfklreias hmvqlqealn elseehnaam eqsqekqgql
      361 erdlheatqe kkcseekiei lqgkislled qlekmrdnsa qekgevmgdv lkleelqrdl
      421 srlssegsel raallrleee rdrreaalka erdlfqaekq hsanvisnlq ttlseshqar
      481 erlerdlqei rqlqtippps releetttrl ektsrerdsa lqelqrlqev natlsnqaea
      541 ltrahdairt aseqekaels rkivelegki lefgaseglr aqlrelegrl kenqqrlaer
      601 eklakensrl qerllflees lrntegiled ekrraaesle vnaariaele aerqqlakrq
      661 tleeekplgt sfssraddge rerleeeira lsrehgrarq llraeqektt aleahvvehq
      721 eksvalqsdl svararleek eeeerklkve iaslrekmsv aeqtaaqrva glevdarrat
      781 ealegisqql sreklrsqel evtverlrna ekelsaavaa gnqrqqerea evkklseevt
      841 llgsrleetl rehrrrsers eeeterlkre legvktdcga erarkaelet qlqnclneqr
      901 veralhreel srwqevmeek kremeelrrv nvsqgeelrd lrkavseleg elasaraakv
      961 dnevswrkem erneatcskd vsfkdseekt ssgerestws egvpqeklte sqrlrwrvee
     1021 lekkceeqqe vvvtleraar teraeleask keaaqqkert lelqktleal rsaqelhegt
     1081 vealrkelqe kgrelvesks aaaaaekelv alrsvaqekk rmeeswkeqi aqcvqelerk
     1141 ttlmgslehe vsilhrqvte kegeskelkr liigeseksk kleerlrvlq temataasra
     1201 aercslmkve vqrcqeemek qrltiealkr drqgqseree elrqevkvsq ekylqkeqll
     1261 nalrqellna qtlagelpal kklchelqae rtalekrhrq eaeeqtrale vlqgqlerlq
     1321 vetaevrslr ersseqertv qrlqaeaaeq asrlaalrqs nlrlleekrr leekklevel
     1381 keseerhsee meklraatea lvatsrreat ekveemrkey esgktaalee kkkmveekqk
     1441 ltaqveqlet frkdhvkqve elqkaltqhe kdtrtqrqki qalevelkae atrhhqkvse
     1501 lqalllqkeq tvehyrgqme kakthyeakk qqnedlveql kameqlqkdn eelrveaqrl
     1561 akelqrsvlr aeeaerrcpr rggprptppa qmdfaklrdl adfqgftdps enrdishrnv
     1621 gelssdslel sleeteplns trkplrshse tsavpsgtke tqrlprkves leslcftpip
     1681 srsrsrlesg vgkdlsvdsg cktrsgqrrt tinitmskth petddpdsan ssfsstslap
     1741 ppraapaksr lrsaasthfp sreslgkmet sspqdnsnds tlrrlpgyrp ltrssvrrqh
     1801 ggsagdgrss ifmascqdep eplddwnria elqqrnrscp phlktcyple irpsdslgti
     1861 tdeemktgdp ketlrrasvq psqitigvtt tttttrrrts gtacvaggvt trqqrkrlsd
     1921 eshhgpetpe skkptacfpr pqtprnrddr rrsqqptpsn paerrqslaf silntpkqig
     1981 ssllrravar knqskssprv garrsprgaa gksprgkvgl rahkdtkf
//
LOCUS       XP_053923271            1162 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear receptor-interacting protein 1 [Cuculus canorus].
ACCESSION   XP_053923271
VERSION     XP_053923271.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067296.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1162
                     /product="nuclear receptor-interacting protein 1"
                     /calculated_mol_wt=127693
     Region          27..329
                     /region_name="NRIP1_repr_1"
                     /note="Nuclear receptor-interacting protein 1 repression
                     1; pfam15687"
                     /db_xref="CDD:434859"
     Region          409..740
                     /region_name="NRIP1_repr_2"
                     /note="Nuclear receptor-interacting protein 1 repression
                     2; pfam15688"
                     /db_xref="CDD:464803"
     Region          755..843
                     /region_name="NRIP1_repr_3"
                     /note="Nuclear receptor-interacting protein 1 repression
                     3; pfam15689"
                     /db_xref="CDD:406181"
     Region          852..1162
                     /region_name="NRIP1_repr_4"
                     /note="Nuclear receptor-interacting protein 1 repression
                     4; pfam15690"
                     /db_xref="CDD:434861"
     CDS             1..1162
                     /gene="NRIP1"
                     /coded_by="XM_054067296.1:619..4107"
                     /db_xref="GeneID:104061592"
ORIGIN      
        1 mthgeelgse mhqdsvvlty legllmhqaa ggsgtaadkk stgrsgedqn fkisgnifps
       61 cqsngpvlnt ntyqgsgmlh lkkarllqss edwnaakrrr lsdsivdldg kkeallagmv
      121 esvpkgkqds tllasllqsf ssrlqsvals qqirqslkeq gyslshdslq vekdlrcygv
      181 asshlktllk kskakdqkld dslpditknl pkerfiesph avqsgpkvin eplscaarlq
      241 avasmvekrs spaaspkpsv acsqlallls seahlqqysr ehalkaqnan qiaserlaam
      301 arlqesaqkd igqlglskga tshlngqtgs stktvsskss mapfqssmgi mhsspknvgy
      361 ksslersnvk tspnnslllh llksqnttkh vkgrersera gifedsstpt tideysdnnp
      421 sfteddssdd esshsnclpi dlsfkqrtdk tdtgppasld nltqsllhnw dpkvscpenk
      481 edkdtpkask lnphqkvtll qlllghksee kvdksndsqg phsaadvakf tvqtgkrtpv
      541 tdspstnrmt plstppllss akadspinls hqplaikrss ppyactiqpd rlvnpaskhl
      601 idlskskeiq gaklsrndsp qnssafsask llqnlaqcgm qtsisseeqr askqllvgnt
      661 ekpvglidrl nsplltnkls theennkifg cqpapteqgl pgseienlle rrtvlqlllg
      721 tpnkgksekk ermllrdess qeqtdkalne qiltvkikte pseesyvpyn snaqqvrefk
      781 gntfqgfvhs lqrntaaspa seelksepls pqdfsfskng llsrllrqnq dsypvdeldr
      841 shrnselthl eskslctvpk krklhaeple splkkmknnv sdaannhasp tealygplln
      901 qqelkysrsd aefkytvshg snnesenrsw srdskgfnvl kqlllsence rdlsqhrnni
      961 laeskkkgnk ssvtinkpef sissvnalmg spvqqnncvd hrtfqypvav kspasspfpe
     1021 hlgntvsrle sdqfsmcpmp sekgpirwvi tgmekndydk dsprltktnp ilyymlqkgg
     1081 nsvtsqeahe keiwnepsft dgsarvtike eltsdaelkt pfsnlrspyn shmgsktshq
     1141 hgvngemhgl lekvltikke pe
//
LOCUS       XP_053923279            1162 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear receptor-interacting protein 1 [Cuculus canorus].
ACCESSION   XP_053923279
VERSION     XP_053923279.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067304.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1162
                     /product="nuclear receptor-interacting protein 1"
                     /calculated_mol_wt=127693
     Region          27..329
                     /region_name="NRIP1_repr_1"
                     /note="Nuclear receptor-interacting protein 1 repression
                     1; pfam15687"
                     /db_xref="CDD:434859"
     Region          409..740
                     /region_name="NRIP1_repr_2"
                     /note="Nuclear receptor-interacting protein 1 repression
                     2; pfam15688"
                     /db_xref="CDD:464803"
     Region          755..843
                     /region_name="NRIP1_repr_3"
                     /note="Nuclear receptor-interacting protein 1 repression
                     3; pfam15689"
                     /db_xref="CDD:406181"
     Region          852..1162
                     /region_name="NRIP1_repr_4"
                     /note="Nuclear receptor-interacting protein 1 repression
                     4; pfam15690"
                     /db_xref="CDD:434861"
     CDS             1..1162
                     /gene="NRIP1"
                     /coded_by="XM_054067304.1:1644..5132"
                     /db_xref="GeneID:104061592"
ORIGIN      
        1 mthgeelgse mhqdsvvlty legllmhqaa ggsgtaadkk stgrsgedqn fkisgnifps
       61 cqsngpvlnt ntyqgsgmlh lkkarllqss edwnaakrrr lsdsivdldg kkeallagmv
      121 esvpkgkqds tllasllqsf ssrlqsvals qqirqslkeq gyslshdslq vekdlrcygv
      181 asshlktllk kskakdqkld dslpditknl pkerfiesph avqsgpkvin eplscaarlq
      241 avasmvekrs spaaspkpsv acsqlallls seahlqqysr ehalkaqnan qiaserlaam
      301 arlqesaqkd igqlglskga tshlngqtgs stktvsskss mapfqssmgi mhsspknvgy
      361 ksslersnvk tspnnslllh llksqnttkh vkgrersera gifedsstpt tideysdnnp
      421 sfteddssdd esshsnclpi dlsfkqrtdk tdtgppasld nltqsllhnw dpkvscpenk
      481 edkdtpkask lnphqkvtll qlllghksee kvdksndsqg phsaadvakf tvqtgkrtpv
      541 tdspstnrmt plstppllss akadspinls hqplaikrss ppyactiqpd rlvnpaskhl
      601 idlskskeiq gaklsrndsp qnssafsask llqnlaqcgm qtsisseeqr askqllvgnt
      661 ekpvglidrl nsplltnkls theennkifg cqpapteqgl pgseienlle rrtvlqlllg
      721 tpnkgksekk ermllrdess qeqtdkalne qiltvkikte pseesyvpyn snaqqvrefk
      781 gntfqgfvhs lqrntaaspa seelksepls pqdfsfskng llsrllrqnq dsypvdeldr
      841 shrnselthl eskslctvpk krklhaeple splkkmknnv sdaannhasp tealygplln
      901 qqelkysrsd aefkytvshg snnesenrsw srdskgfnvl kqlllsence rdlsqhrnni
      961 laeskkkgnk ssvtinkpef sissvnalmg spvqqnncvd hrtfqypvav kspasspfpe
     1021 hlgntvsrle sdqfsmcpmp sekgpirwvi tgmekndydk dsprltktnp ilyymlqkgg
     1081 nsvtsqeahe keiwnepsft dgsarvtike eltsdaelkt pfsnlrspyn shmgsktshq
     1141 hgvngemhgl lekvltikke pe
//
LOCUS       XP_053923289            1162 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear receptor-interacting protein 1 [Cuculus canorus].
ACCESSION   XP_053923289
VERSION     XP_053923289.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067314.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1162
                     /product="nuclear receptor-interacting protein 1"
                     /calculated_mol_wt=127693
     Region          27..329
                     /region_name="NRIP1_repr_1"
                     /note="Nuclear receptor-interacting protein 1 repression
                     1; pfam15687"
                     /db_xref="CDD:434859"
     Region          409..740
                     /region_name="NRIP1_repr_2"
                     /note="Nuclear receptor-interacting protein 1 repression
                     2; pfam15688"
                     /db_xref="CDD:464803"
     Region          755..843
                     /region_name="NRIP1_repr_3"
                     /note="Nuclear receptor-interacting protein 1 repression
                     3; pfam15689"
                     /db_xref="CDD:406181"
     Region          852..1162
                     /region_name="NRIP1_repr_4"
                     /note="Nuclear receptor-interacting protein 1 repression
                     4; pfam15690"
                     /db_xref="CDD:434861"
     CDS             1..1162
                     /gene="NRIP1"
                     /coded_by="XM_054067314.1:1700..5188"
                     /db_xref="GeneID:104061592"
ORIGIN      
        1 mthgeelgse mhqdsvvlty legllmhqaa ggsgtaadkk stgrsgedqn fkisgnifps
       61 cqsngpvlnt ntyqgsgmlh lkkarllqss edwnaakrrr lsdsivdldg kkeallagmv
      121 esvpkgkqds tllasllqsf ssrlqsvals qqirqslkeq gyslshdslq vekdlrcygv
      181 asshlktllk kskakdqkld dslpditknl pkerfiesph avqsgpkvin eplscaarlq
      241 avasmvekrs spaaspkpsv acsqlallls seahlqqysr ehalkaqnan qiaserlaam
      301 arlqesaqkd igqlglskga tshlngqtgs stktvsskss mapfqssmgi mhsspknvgy
      361 ksslersnvk tspnnslllh llksqnttkh vkgrersera gifedsstpt tideysdnnp
      421 sfteddssdd esshsnclpi dlsfkqrtdk tdtgppasld nltqsllhnw dpkvscpenk
      481 edkdtpkask lnphqkvtll qlllghksee kvdksndsqg phsaadvakf tvqtgkrtpv
      541 tdspstnrmt plstppllss akadspinls hqplaikrss ppyactiqpd rlvnpaskhl
      601 idlskskeiq gaklsrndsp qnssafsask llqnlaqcgm qtsisseeqr askqllvgnt
      661 ekpvglidrl nsplltnkls theennkifg cqpapteqgl pgseienlle rrtvlqlllg
      721 tpnkgksekk ermllrdess qeqtdkalne qiltvkikte pseesyvpyn snaqqvrefk
      781 gntfqgfvhs lqrntaaspa seelksepls pqdfsfskng llsrllrqnq dsypvdeldr
      841 shrnselthl eskslctvpk krklhaeple splkkmknnv sdaannhasp tealygplln
      901 qqelkysrsd aefkytvshg snnesenrsw srdskgfnvl kqlllsence rdlsqhrnni
      961 laeskkkgnk ssvtinkpef sissvnalmg spvqqnncvd hrtfqypvav kspasspfpe
     1021 hlgntvsrle sdqfsmcpmp sekgpirwvi tgmekndydk dsprltktnp ilyymlqkgg
     1081 nsvtsqeahe keiwnepsft dgsarvtike eltsdaelkt pfsnlrspyn shmgsktshq
     1141 hgvngemhgl lekvltikke pe
//
LOCUS       XP_053923297            1162 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear receptor-interacting protein 1 [Cuculus canorus].
ACCESSION   XP_053923297
VERSION     XP_053923297.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067322.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1162
                     /product="nuclear receptor-interacting protein 1"
                     /calculated_mol_wt=127693
     Region          27..329
                     /region_name="NRIP1_repr_1"
                     /note="Nuclear receptor-interacting protein 1 repression
                     1; pfam15687"
                     /db_xref="CDD:434859"
     Region          409..740
                     /region_name="NRIP1_repr_2"
                     /note="Nuclear receptor-interacting protein 1 repression
                     2; pfam15688"
                     /db_xref="CDD:464803"
     Region          755..843
                     /region_name="NRIP1_repr_3"
                     /note="Nuclear receptor-interacting protein 1 repression
                     3; pfam15689"
                     /db_xref="CDD:406181"
     Region          852..1162
                     /region_name="NRIP1_repr_4"
                     /note="Nuclear receptor-interacting protein 1 repression
                     4; pfam15690"
                     /db_xref="CDD:434861"
     CDS             1..1162
                     /gene="NRIP1"
                     /coded_by="XM_054067322.1:1533..5021"
                     /db_xref="GeneID:104061592"
ORIGIN      
        1 mthgeelgse mhqdsvvlty legllmhqaa ggsgtaadkk stgrsgedqn fkisgnifps
       61 cqsngpvlnt ntyqgsgmlh lkkarllqss edwnaakrrr lsdsivdldg kkeallagmv
      121 esvpkgkqds tllasllqsf ssrlqsvals qqirqslkeq gyslshdslq vekdlrcygv
      181 asshlktllk kskakdqkld dslpditknl pkerfiesph avqsgpkvin eplscaarlq
      241 avasmvekrs spaaspkpsv acsqlallls seahlqqysr ehalkaqnan qiaserlaam
      301 arlqesaqkd igqlglskga tshlngqtgs stktvsskss mapfqssmgi mhsspknvgy
      361 ksslersnvk tspnnslllh llksqnttkh vkgrersera gifedsstpt tideysdnnp
      421 sfteddssdd esshsnclpi dlsfkqrtdk tdtgppasld nltqsllhnw dpkvscpenk
      481 edkdtpkask lnphqkvtll qlllghksee kvdksndsqg phsaadvakf tvqtgkrtpv
      541 tdspstnrmt plstppllss akadspinls hqplaikrss ppyactiqpd rlvnpaskhl
      601 idlskskeiq gaklsrndsp qnssafsask llqnlaqcgm qtsisseeqr askqllvgnt
      661 ekpvglidrl nsplltnkls theennkifg cqpapteqgl pgseienlle rrtvlqlllg
      721 tpnkgksekk ermllrdess qeqtdkalne qiltvkikte pseesyvpyn snaqqvrefk
      781 gntfqgfvhs lqrntaaspa seelksepls pqdfsfskng llsrllrqnq dsypvdeldr
      841 shrnselthl eskslctvpk krklhaeple splkkmknnv sdaannhasp tealygplln
      901 qqelkysrsd aefkytvshg snnesenrsw srdskgfnvl kqlllsence rdlsqhrnni
      961 laeskkkgnk ssvtinkpef sissvnalmg spvqqnncvd hrtfqypvav kspasspfpe
     1021 hlgntvsrle sdqfsmcpmp sekgpirwvi tgmekndydk dsprltktnp ilyymlqkgg
     1081 nsvtsqeahe keiwnepsft dgsarvtike eltsdaelkt pfsnlrspyn shmgsktshq
     1141 hgvngemhgl lekvltikke pe
//
LOCUS       XP_053923306            1162 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear receptor-interacting protein 1 [Cuculus canorus].
ACCESSION   XP_053923306
VERSION     XP_053923306.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067331.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1162
                     /product="nuclear receptor-interacting protein 1"
                     /calculated_mol_wt=127693
     Region          27..329
                     /region_name="NRIP1_repr_1"
                     /note="Nuclear receptor-interacting protein 1 repression
                     1; pfam15687"
                     /db_xref="CDD:434859"
     Region          409..740
                     /region_name="NRIP1_repr_2"
                     /note="Nuclear receptor-interacting protein 1 repression
                     2; pfam15688"
                     /db_xref="CDD:464803"
     Region          755..843
                     /region_name="NRIP1_repr_3"
                     /note="Nuclear receptor-interacting protein 1 repression
                     3; pfam15689"
                     /db_xref="CDD:406181"
     Region          852..1162
                     /region_name="NRIP1_repr_4"
                     /note="Nuclear receptor-interacting protein 1 repression
                     4; pfam15690"
                     /db_xref="CDD:434861"
     CDS             1..1162
                     /gene="NRIP1"
                     /coded_by="XM_054067331.1:1641..5129"
                     /db_xref="GeneID:104061592"
ORIGIN      
        1 mthgeelgse mhqdsvvlty legllmhqaa ggsgtaadkk stgrsgedqn fkisgnifps
       61 cqsngpvlnt ntyqgsgmlh lkkarllqss edwnaakrrr lsdsivdldg kkeallagmv
      121 esvpkgkqds tllasllqsf ssrlqsvals qqirqslkeq gyslshdslq vekdlrcygv
      181 asshlktllk kskakdqkld dslpditknl pkerfiesph avqsgpkvin eplscaarlq
      241 avasmvekrs spaaspkpsv acsqlallls seahlqqysr ehalkaqnan qiaserlaam
      301 arlqesaqkd igqlglskga tshlngqtgs stktvsskss mapfqssmgi mhsspknvgy
      361 ksslersnvk tspnnslllh llksqnttkh vkgrersera gifedsstpt tideysdnnp
      421 sfteddssdd esshsnclpi dlsfkqrtdk tdtgppasld nltqsllhnw dpkvscpenk
      481 edkdtpkask lnphqkvtll qlllghksee kvdksndsqg phsaadvakf tvqtgkrtpv
      541 tdspstnrmt plstppllss akadspinls hqplaikrss ppyactiqpd rlvnpaskhl
      601 idlskskeiq gaklsrndsp qnssafsask llqnlaqcgm qtsisseeqr askqllvgnt
      661 ekpvglidrl nsplltnkls theennkifg cqpapteqgl pgseienlle rrtvlqlllg
      721 tpnkgksekk ermllrdess qeqtdkalne qiltvkikte pseesyvpyn snaqqvrefk
      781 gntfqgfvhs lqrntaaspa seelksepls pqdfsfskng llsrllrqnq dsypvdeldr
      841 shrnselthl eskslctvpk krklhaeple splkkmknnv sdaannhasp tealygplln
      901 qqelkysrsd aefkytvshg snnesenrsw srdskgfnvl kqlllsence rdlsqhrnni
      961 laeskkkgnk ssvtinkpef sissvnalmg spvqqnncvd hrtfqypvav kspasspfpe
     1021 hlgntvsrle sdqfsmcpmp sekgpirwvi tgmekndydk dsprltktnp ilyymlqkgg
     1081 nsvtsqeahe keiwnepsft dgsarvtike eltsdaelkt pfsnlrspyn shmgsktshq
     1141 hgvngemhgl lekvltikke pe
//
LOCUS       XP_053923315            1162 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear receptor-interacting protein 1 [Cuculus canorus].
ACCESSION   XP_053923315
VERSION     XP_053923315.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067340.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1162
                     /product="nuclear receptor-interacting protein 1"
                     /calculated_mol_wt=127693
     Region          27..329
                     /region_name="NRIP1_repr_1"
                     /note="Nuclear receptor-interacting protein 1 repression
                     1; pfam15687"
                     /db_xref="CDD:434859"
     Region          409..740
                     /region_name="NRIP1_repr_2"
                     /note="Nuclear receptor-interacting protein 1 repression
                     2; pfam15688"
                     /db_xref="CDD:464803"
     Region          755..843
                     /region_name="NRIP1_repr_3"
                     /note="Nuclear receptor-interacting protein 1 repression
                     3; pfam15689"
                     /db_xref="CDD:406181"
     Region          852..1162
                     /region_name="NRIP1_repr_4"
                     /note="Nuclear receptor-interacting protein 1 repression
                     4; pfam15690"
                     /db_xref="CDD:434861"
     CDS             1..1162
                     /gene="NRIP1"
                     /coded_by="XM_054067340.1:724..4212"
                     /db_xref="GeneID:104061592"
ORIGIN      
        1 mthgeelgse mhqdsvvlty legllmhqaa ggsgtaadkk stgrsgedqn fkisgnifps
       61 cqsngpvlnt ntyqgsgmlh lkkarllqss edwnaakrrr lsdsivdldg kkeallagmv
      121 esvpkgkqds tllasllqsf ssrlqsvals qqirqslkeq gyslshdslq vekdlrcygv
      181 asshlktllk kskakdqkld dslpditknl pkerfiesph avqsgpkvin eplscaarlq
      241 avasmvekrs spaaspkpsv acsqlallls seahlqqysr ehalkaqnan qiaserlaam
      301 arlqesaqkd igqlglskga tshlngqtgs stktvsskss mapfqssmgi mhsspknvgy
      361 ksslersnvk tspnnslllh llksqnttkh vkgrersera gifedsstpt tideysdnnp
      421 sfteddssdd esshsnclpi dlsfkqrtdk tdtgppasld nltqsllhnw dpkvscpenk
      481 edkdtpkask lnphqkvtll qlllghksee kvdksndsqg phsaadvakf tvqtgkrtpv
      541 tdspstnrmt plstppllss akadspinls hqplaikrss ppyactiqpd rlvnpaskhl
      601 idlskskeiq gaklsrndsp qnssafsask llqnlaqcgm qtsisseeqr askqllvgnt
      661 ekpvglidrl nsplltnkls theennkifg cqpapteqgl pgseienlle rrtvlqlllg
      721 tpnkgksekk ermllrdess qeqtdkalne qiltvkikte pseesyvpyn snaqqvrefk
      781 gntfqgfvhs lqrntaaspa seelksepls pqdfsfskng llsrllrqnq dsypvdeldr
      841 shrnselthl eskslctvpk krklhaeple splkkmknnv sdaannhasp tealygplln
      901 qqelkysrsd aefkytvshg snnesenrsw srdskgfnvl kqlllsence rdlsqhrnni
      961 laeskkkgnk ssvtinkpef sissvnalmg spvqqnncvd hrtfqypvav kspasspfpe
     1021 hlgntvsrle sdqfsmcpmp sekgpirwvi tgmekndydk dsprltktnp ilyymlqkgg
     1081 nsvtsqeahe keiwnepsft dgsarvtike eltsdaelkt pfsnlrspyn shmgsktshq
     1141 hgvngemhgl lekvltikke pe
//
LOCUS       XP_053923323            1162 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear receptor-interacting protein 1 [Cuculus canorus].
ACCESSION   XP_053923323
VERSION     XP_053923323.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067348.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1162
                     /product="nuclear receptor-interacting protein 1"
                     /calculated_mol_wt=127693
     Region          27..329
                     /region_name="NRIP1_repr_1"
                     /note="Nuclear receptor-interacting protein 1 repression
                     1; pfam15687"
                     /db_xref="CDD:434859"
     Region          409..740
                     /region_name="NRIP1_repr_2"
                     /note="Nuclear receptor-interacting protein 1 repression
                     2; pfam15688"
                     /db_xref="CDD:464803"
     Region          755..843
                     /region_name="NRIP1_repr_3"
                     /note="Nuclear receptor-interacting protein 1 repression
                     3; pfam15689"
                     /db_xref="CDD:406181"
     Region          852..1162
                     /region_name="NRIP1_repr_4"
                     /note="Nuclear receptor-interacting protein 1 repression
                     4; pfam15690"
                     /db_xref="CDD:434861"
     CDS             1..1162
                     /gene="NRIP1"
                     /coded_by="XM_054067348.1:1397..4885"
                     /db_xref="GeneID:104061592"
ORIGIN      
        1 mthgeelgse mhqdsvvlty legllmhqaa ggsgtaadkk stgrsgedqn fkisgnifps
       61 cqsngpvlnt ntyqgsgmlh lkkarllqss edwnaakrrr lsdsivdldg kkeallagmv
      121 esvpkgkqds tllasllqsf ssrlqsvals qqirqslkeq gyslshdslq vekdlrcygv
      181 asshlktllk kskakdqkld dslpditknl pkerfiesph avqsgpkvin eplscaarlq
      241 avasmvekrs spaaspkpsv acsqlallls seahlqqysr ehalkaqnan qiaserlaam
      301 arlqesaqkd igqlglskga tshlngqtgs stktvsskss mapfqssmgi mhsspknvgy
      361 ksslersnvk tspnnslllh llksqnttkh vkgrersera gifedsstpt tideysdnnp
      421 sfteddssdd esshsnclpi dlsfkqrtdk tdtgppasld nltqsllhnw dpkvscpenk
      481 edkdtpkask lnphqkvtll qlllghksee kvdksndsqg phsaadvakf tvqtgkrtpv
      541 tdspstnrmt plstppllss akadspinls hqplaikrss ppyactiqpd rlvnpaskhl
      601 idlskskeiq gaklsrndsp qnssafsask llqnlaqcgm qtsisseeqr askqllvgnt
      661 ekpvglidrl nsplltnkls theennkifg cqpapteqgl pgseienlle rrtvlqlllg
      721 tpnkgksekk ermllrdess qeqtdkalne qiltvkikte pseesyvpyn snaqqvrefk
      781 gntfqgfvhs lqrntaaspa seelksepls pqdfsfskng llsrllrqnq dsypvdeldr
      841 shrnselthl eskslctvpk krklhaeple splkkmknnv sdaannhasp tealygplln
      901 qqelkysrsd aefkytvshg snnesenrsw srdskgfnvl kqlllsence rdlsqhrnni
      961 laeskkkgnk ssvtinkpef sissvnalmg spvqqnncvd hrtfqypvav kspasspfpe
     1021 hlgntvsrle sdqfsmcpmp sekgpirwvi tgmekndydk dsprltktnp ilyymlqkgg
     1081 nsvtsqeahe keiwnepsft dgsarvtike eltsdaelkt pfsnlrspyn shmgsktshq
     1141 hgvngemhgl lekvltikke pe
//
LOCUS       XP_053923332            1162 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear receptor-interacting protein 1 [Cuculus canorus].
ACCESSION   XP_053923332
VERSION     XP_053923332.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067357.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1162
                     /product="nuclear receptor-interacting protein 1"
                     /calculated_mol_wt=127693
     Region          27..329
                     /region_name="NRIP1_repr_1"
                     /note="Nuclear receptor-interacting protein 1 repression
                     1; pfam15687"
                     /db_xref="CDD:434859"
     Region          409..740
                     /region_name="NRIP1_repr_2"
                     /note="Nuclear receptor-interacting protein 1 repression
                     2; pfam15688"
                     /db_xref="CDD:464803"
     Region          755..843
                     /region_name="NRIP1_repr_3"
                     /note="Nuclear receptor-interacting protein 1 repression
                     3; pfam15689"
                     /db_xref="CDD:406181"
     Region          852..1162
                     /region_name="NRIP1_repr_4"
                     /note="Nuclear receptor-interacting protein 1 repression
                     4; pfam15690"
                     /db_xref="CDD:434861"
     CDS             1..1162
                     /gene="NRIP1"
                     /coded_by="XM_054067357.1:1539..5027"
                     /db_xref="GeneID:104061592"
ORIGIN      
        1 mthgeelgse mhqdsvvlty legllmhqaa ggsgtaadkk stgrsgedqn fkisgnifps
       61 cqsngpvlnt ntyqgsgmlh lkkarllqss edwnaakrrr lsdsivdldg kkeallagmv
      121 esvpkgkqds tllasllqsf ssrlqsvals qqirqslkeq gyslshdslq vekdlrcygv
      181 asshlktllk kskakdqkld dslpditknl pkerfiesph avqsgpkvin eplscaarlq
      241 avasmvekrs spaaspkpsv acsqlallls seahlqqysr ehalkaqnan qiaserlaam
      301 arlqesaqkd igqlglskga tshlngqtgs stktvsskss mapfqssmgi mhsspknvgy
      361 ksslersnvk tspnnslllh llksqnttkh vkgrersera gifedsstpt tideysdnnp
      421 sfteddssdd esshsnclpi dlsfkqrtdk tdtgppasld nltqsllhnw dpkvscpenk
      481 edkdtpkask lnphqkvtll qlllghksee kvdksndsqg phsaadvakf tvqtgkrtpv
      541 tdspstnrmt plstppllss akadspinls hqplaikrss ppyactiqpd rlvnpaskhl
      601 idlskskeiq gaklsrndsp qnssafsask llqnlaqcgm qtsisseeqr askqllvgnt
      661 ekpvglidrl nsplltnkls theennkifg cqpapteqgl pgseienlle rrtvlqlllg
      721 tpnkgksekk ermllrdess qeqtdkalne qiltvkikte pseesyvpyn snaqqvrefk
      781 gntfqgfvhs lqrntaaspa seelksepls pqdfsfskng llsrllrqnq dsypvdeldr
      841 shrnselthl eskslctvpk krklhaeple splkkmknnv sdaannhasp tealygplln
      901 qqelkysrsd aefkytvshg snnesenrsw srdskgfnvl kqlllsence rdlsqhrnni
      961 laeskkkgnk ssvtinkpef sissvnalmg spvqqnncvd hrtfqypvav kspasspfpe
     1021 hlgntvsrle sdqfsmcpmp sekgpirwvi tgmekndydk dsprltktnp ilyymlqkgg
     1081 nsvtsqeahe keiwnepsft dgsarvtike eltsdaelkt pfsnlrspyn shmgsktshq
     1141 hgvngemhgl lekvltikke pe
//
LOCUS       XP_053923342            1162 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear receptor-interacting protein 1 [Cuculus canorus].
ACCESSION   XP_053923342
VERSION     XP_053923342.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067367.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1162
                     /product="nuclear receptor-interacting protein 1"
                     /calculated_mol_wt=127693
     Region          27..329
                     /region_name="NRIP1_repr_1"
                     /note="Nuclear receptor-interacting protein 1 repression
                     1; pfam15687"
                     /db_xref="CDD:434859"
     Region          409..740
                     /region_name="NRIP1_repr_2"
                     /note="Nuclear receptor-interacting protein 1 repression
                     2; pfam15688"
                     /db_xref="CDD:464803"
     Region          755..843
                     /region_name="NRIP1_repr_3"
                     /note="Nuclear receptor-interacting protein 1 repression
                     3; pfam15689"
                     /db_xref="CDD:406181"
     Region          852..1162
                     /region_name="NRIP1_repr_4"
                     /note="Nuclear receptor-interacting protein 1 repression
                     4; pfam15690"
                     /db_xref="CDD:434861"
     CDS             1..1162
                     /gene="NRIP1"
                     /coded_by="XM_054067367.1:1366..4854"
                     /db_xref="GeneID:104061592"
ORIGIN      
        1 mthgeelgse mhqdsvvlty legllmhqaa ggsgtaadkk stgrsgedqn fkisgnifps
       61 cqsngpvlnt ntyqgsgmlh lkkarllqss edwnaakrrr lsdsivdldg kkeallagmv
      121 esvpkgkqds tllasllqsf ssrlqsvals qqirqslkeq gyslshdslq vekdlrcygv
      181 asshlktllk kskakdqkld dslpditknl pkerfiesph avqsgpkvin eplscaarlq
      241 avasmvekrs spaaspkpsv acsqlallls seahlqqysr ehalkaqnan qiaserlaam
      301 arlqesaqkd igqlglskga tshlngqtgs stktvsskss mapfqssmgi mhsspknvgy
      361 ksslersnvk tspnnslllh llksqnttkh vkgrersera gifedsstpt tideysdnnp
      421 sfteddssdd esshsnclpi dlsfkqrtdk tdtgppasld nltqsllhnw dpkvscpenk
      481 edkdtpkask lnphqkvtll qlllghksee kvdksndsqg phsaadvakf tvqtgkrtpv
      541 tdspstnrmt plstppllss akadspinls hqplaikrss ppyactiqpd rlvnpaskhl
      601 idlskskeiq gaklsrndsp qnssafsask llqnlaqcgm qtsisseeqr askqllvgnt
      661 ekpvglidrl nsplltnkls theennkifg cqpapteqgl pgseienlle rrtvlqlllg
      721 tpnkgksekk ermllrdess qeqtdkalne qiltvkikte pseesyvpyn snaqqvrefk
      781 gntfqgfvhs lqrntaaspa seelksepls pqdfsfskng llsrllrqnq dsypvdeldr
      841 shrnselthl eskslctvpk krklhaeple splkkmknnv sdaannhasp tealygplln
      901 qqelkysrsd aefkytvshg snnesenrsw srdskgfnvl kqlllsence rdlsqhrnni
      961 laeskkkgnk ssvtinkpef sissvnalmg spvqqnncvd hrtfqypvav kspasspfpe
     1021 hlgntvsrle sdqfsmcpmp sekgpirwvi tgmekndydk dsprltktnp ilyymlqkgg
     1081 nsvtsqeahe keiwnepsft dgsarvtike eltsdaelkt pfsnlrspyn shmgsktshq
     1141 hgvngemhgl lekvltikke pe
//
LOCUS       XP_053923353            1162 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear receptor-interacting protein 1 [Cuculus canorus].
ACCESSION   XP_053923353
VERSION     XP_053923353.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067378.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1162
                     /product="nuclear receptor-interacting protein 1"
                     /calculated_mol_wt=127693
     Region          27..329
                     /region_name="NRIP1_repr_1"
                     /note="Nuclear receptor-interacting protein 1 repression
                     1; pfam15687"
                     /db_xref="CDD:434859"
     Region          409..740
                     /region_name="NRIP1_repr_2"
                     /note="Nuclear receptor-interacting protein 1 repression
                     2; pfam15688"
                     /db_xref="CDD:464803"
     Region          755..843
                     /region_name="NRIP1_repr_3"
                     /note="Nuclear receptor-interacting protein 1 repression
                     3; pfam15689"
                     /db_xref="CDD:406181"
     Region          852..1162
                     /region_name="NRIP1_repr_4"
                     /note="Nuclear receptor-interacting protein 1 repression
                     4; pfam15690"
                     /db_xref="CDD:434861"
     CDS             1..1162
                     /gene="NRIP1"
                     /coded_by="XM_054067378.1:915..4403"
                     /db_xref="GeneID:104061592"
ORIGIN      
        1 mthgeelgse mhqdsvvlty legllmhqaa ggsgtaadkk stgrsgedqn fkisgnifps
       61 cqsngpvlnt ntyqgsgmlh lkkarllqss edwnaakrrr lsdsivdldg kkeallagmv
      121 esvpkgkqds tllasllqsf ssrlqsvals qqirqslkeq gyslshdslq vekdlrcygv
      181 asshlktllk kskakdqkld dslpditknl pkerfiesph avqsgpkvin eplscaarlq
      241 avasmvekrs spaaspkpsv acsqlallls seahlqqysr ehalkaqnan qiaserlaam
      301 arlqesaqkd igqlglskga tshlngqtgs stktvsskss mapfqssmgi mhsspknvgy
      361 ksslersnvk tspnnslllh llksqnttkh vkgrersera gifedsstpt tideysdnnp
      421 sfteddssdd esshsnclpi dlsfkqrtdk tdtgppasld nltqsllhnw dpkvscpenk
      481 edkdtpkask lnphqkvtll qlllghksee kvdksndsqg phsaadvakf tvqtgkrtpv
      541 tdspstnrmt plstppllss akadspinls hqplaikrss ppyactiqpd rlvnpaskhl
      601 idlskskeiq gaklsrndsp qnssafsask llqnlaqcgm qtsisseeqr askqllvgnt
      661 ekpvglidrl nsplltnkls theennkifg cqpapteqgl pgseienlle rrtvlqlllg
      721 tpnkgksekk ermllrdess qeqtdkalne qiltvkikte pseesyvpyn snaqqvrefk
      781 gntfqgfvhs lqrntaaspa seelksepls pqdfsfskng llsrllrqnq dsypvdeldr
      841 shrnselthl eskslctvpk krklhaeple splkkmknnv sdaannhasp tealygplln
      901 qqelkysrsd aefkytvshg snnesenrsw srdskgfnvl kqlllsence rdlsqhrnni
      961 laeskkkgnk ssvtinkpef sissvnalmg spvqqnncvd hrtfqypvav kspasspfpe
     1021 hlgntvsrle sdqfsmcpmp sekgpirwvi tgmekndydk dsprltktnp ilyymlqkgg
     1081 nsvtsqeahe keiwnepsft dgsarvtike eltsdaelkt pfsnlrspyn shmgsktshq
     1141 hgvngemhgl lekvltikke pe
//
LOCUS       XP_053923362            1162 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear receptor-interacting protein 1 [Cuculus canorus].
ACCESSION   XP_053923362
VERSION     XP_053923362.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067387.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1162
                     /product="nuclear receptor-interacting protein 1"
                     /calculated_mol_wt=127693
     Region          27..329
                     /region_name="NRIP1_repr_1"
                     /note="Nuclear receptor-interacting protein 1 repression
                     1; pfam15687"
                     /db_xref="CDD:434859"
     Region          409..740
                     /region_name="NRIP1_repr_2"
                     /note="Nuclear receptor-interacting protein 1 repression
                     2; pfam15688"
                     /db_xref="CDD:464803"
     Region          755..843
                     /region_name="NRIP1_repr_3"
                     /note="Nuclear receptor-interacting protein 1 repression
                     3; pfam15689"
                     /db_xref="CDD:406181"
     Region          852..1162
                     /region_name="NRIP1_repr_4"
                     /note="Nuclear receptor-interacting protein 1 repression
                     4; pfam15690"
                     /db_xref="CDD:434861"
     CDS             1..1162
                     /gene="NRIP1"
                     /coded_by="XM_054067387.1:624..4112"
                     /db_xref="GeneID:104061592"
ORIGIN      
        1 mthgeelgse mhqdsvvlty legllmhqaa ggsgtaadkk stgrsgedqn fkisgnifps
       61 cqsngpvlnt ntyqgsgmlh lkkarllqss edwnaakrrr lsdsivdldg kkeallagmv
      121 esvpkgkqds tllasllqsf ssrlqsvals qqirqslkeq gyslshdslq vekdlrcygv
      181 asshlktllk kskakdqkld dslpditknl pkerfiesph avqsgpkvin eplscaarlq
      241 avasmvekrs spaaspkpsv acsqlallls seahlqqysr ehalkaqnan qiaserlaam
      301 arlqesaqkd igqlglskga tshlngqtgs stktvsskss mapfqssmgi mhsspknvgy
      361 ksslersnvk tspnnslllh llksqnttkh vkgrersera gifedsstpt tideysdnnp
      421 sfteddssdd esshsnclpi dlsfkqrtdk tdtgppasld nltqsllhnw dpkvscpenk
      481 edkdtpkask lnphqkvtll qlllghksee kvdksndsqg phsaadvakf tvqtgkrtpv
      541 tdspstnrmt plstppllss akadspinls hqplaikrss ppyactiqpd rlvnpaskhl
      601 idlskskeiq gaklsrndsp qnssafsask llqnlaqcgm qtsisseeqr askqllvgnt
      661 ekpvglidrl nsplltnkls theennkifg cqpapteqgl pgseienlle rrtvlqlllg
      721 tpnkgksekk ermllrdess qeqtdkalne qiltvkikte pseesyvpyn snaqqvrefk
      781 gntfqgfvhs lqrntaaspa seelksepls pqdfsfskng llsrllrqnq dsypvdeldr
      841 shrnselthl eskslctvpk krklhaeple splkkmknnv sdaannhasp tealygplln
      901 qqelkysrsd aefkytvshg snnesenrsw srdskgfnvl kqlllsence rdlsqhrnni
      961 laeskkkgnk ssvtinkpef sissvnalmg spvqqnncvd hrtfqypvav kspasspfpe
     1021 hlgntvsrle sdqfsmcpmp sekgpirwvi tgmekndydk dsprltktnp ilyymlqkgg
     1081 nsvtsqeahe keiwnepsft dgsarvtike eltsdaelkt pfsnlrspyn shmgsktshq
     1141 hgvngemhgl lekvltikke pe
//
LOCUS       XP_053923370            1162 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear receptor-interacting protein 1 [Cuculus canorus].
ACCESSION   XP_053923370
VERSION     XP_053923370.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067395.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1162
                     /product="nuclear receptor-interacting protein 1"
                     /calculated_mol_wt=127693
     Region          27..329
                     /region_name="NRIP1_repr_1"
                     /note="Nuclear receptor-interacting protein 1 repression
                     1; pfam15687"
                     /db_xref="CDD:434859"
     Region          409..740
                     /region_name="NRIP1_repr_2"
                     /note="Nuclear receptor-interacting protein 1 repression
                     2; pfam15688"
                     /db_xref="CDD:464803"
     Region          755..843
                     /region_name="NRIP1_repr_3"
                     /note="Nuclear receptor-interacting protein 1 repression
                     3; pfam15689"
                     /db_xref="CDD:406181"
     Region          852..1162
                     /region_name="NRIP1_repr_4"
                     /note="Nuclear receptor-interacting protein 1 repression
                     4; pfam15690"
                     /db_xref="CDD:434861"
     CDS             1..1162
                     /gene="NRIP1"
                     /coded_by="XM_054067395.1:727..4215"
                     /db_xref="GeneID:104061592"
ORIGIN      
        1 mthgeelgse mhqdsvvlty legllmhqaa ggsgtaadkk stgrsgedqn fkisgnifps
       61 cqsngpvlnt ntyqgsgmlh lkkarllqss edwnaakrrr lsdsivdldg kkeallagmv
      121 esvpkgkqds tllasllqsf ssrlqsvals qqirqslkeq gyslshdslq vekdlrcygv
      181 asshlktllk kskakdqkld dslpditknl pkerfiesph avqsgpkvin eplscaarlq
      241 avasmvekrs spaaspkpsv acsqlallls seahlqqysr ehalkaqnan qiaserlaam
      301 arlqesaqkd igqlglskga tshlngqtgs stktvsskss mapfqssmgi mhsspknvgy
      361 ksslersnvk tspnnslllh llksqnttkh vkgrersera gifedsstpt tideysdnnp
      421 sfteddssdd esshsnclpi dlsfkqrtdk tdtgppasld nltqsllhnw dpkvscpenk
      481 edkdtpkask lnphqkvtll qlllghksee kvdksndsqg phsaadvakf tvqtgkrtpv
      541 tdspstnrmt plstppllss akadspinls hqplaikrss ppyactiqpd rlvnpaskhl
      601 idlskskeiq gaklsrndsp qnssafsask llqnlaqcgm qtsisseeqr askqllvgnt
      661 ekpvglidrl nsplltnkls theennkifg cqpapteqgl pgseienlle rrtvlqlllg
      721 tpnkgksekk ermllrdess qeqtdkalne qiltvkikte pseesyvpyn snaqqvrefk
      781 gntfqgfvhs lqrntaaspa seelksepls pqdfsfskng llsrllrqnq dsypvdeldr
      841 shrnselthl eskslctvpk krklhaeple splkkmknnv sdaannhasp tealygplln
      901 qqelkysrsd aefkytvshg snnesenrsw srdskgfnvl kqlllsence rdlsqhrnni
      961 laeskkkgnk ssvtinkpef sissvnalmg spvqqnncvd hrtfqypvav kspasspfpe
     1021 hlgntvsrle sdqfsmcpmp sekgpirwvi tgmekndydk dsprltktnp ilyymlqkgg
     1081 nsvtsqeahe keiwnepsft dgsarvtike eltsdaelkt pfsnlrspyn shmgsktshq
     1141 hgvngemhgl lekvltikke pe
//
LOCUS       XP_053923379            1162 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear receptor-interacting protein 1 [Cuculus canorus].
ACCESSION   XP_053923379
VERSION     XP_053923379.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067404.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1162
                     /product="nuclear receptor-interacting protein 1"
                     /calculated_mol_wt=127693
     Region          27..329
                     /region_name="NRIP1_repr_1"
                     /note="Nuclear receptor-interacting protein 1 repression
                     1; pfam15687"
                     /db_xref="CDD:434859"
     Region          409..740
                     /region_name="NRIP1_repr_2"
                     /note="Nuclear receptor-interacting protein 1 repression
                     2; pfam15688"
                     /db_xref="CDD:464803"
     Region          755..843
                     /region_name="NRIP1_repr_3"
                     /note="Nuclear receptor-interacting protein 1 repression
                     3; pfam15689"
                     /db_xref="CDD:406181"
     Region          852..1162
                     /region_name="NRIP1_repr_4"
                     /note="Nuclear receptor-interacting protein 1 repression
                     4; pfam15690"
                     /db_xref="CDD:434861"
     CDS             1..1162
                     /gene="NRIP1"
                     /coded_by="XM_054067404.1:521..4009"
                     /db_xref="GeneID:104061592"
ORIGIN      
        1 mthgeelgse mhqdsvvlty legllmhqaa ggsgtaadkk stgrsgedqn fkisgnifps
       61 cqsngpvlnt ntyqgsgmlh lkkarllqss edwnaakrrr lsdsivdldg kkeallagmv
      121 esvpkgkqds tllasllqsf ssrlqsvals qqirqslkeq gyslshdslq vekdlrcygv
      181 asshlktllk kskakdqkld dslpditknl pkerfiesph avqsgpkvin eplscaarlq
      241 avasmvekrs spaaspkpsv acsqlallls seahlqqysr ehalkaqnan qiaserlaam
      301 arlqesaqkd igqlglskga tshlngqtgs stktvsskss mapfqssmgi mhsspknvgy
      361 ksslersnvk tspnnslllh llksqnttkh vkgrersera gifedsstpt tideysdnnp
      421 sfteddssdd esshsnclpi dlsfkqrtdk tdtgppasld nltqsllhnw dpkvscpenk
      481 edkdtpkask lnphqkvtll qlllghksee kvdksndsqg phsaadvakf tvqtgkrtpv
      541 tdspstnrmt plstppllss akadspinls hqplaikrss ppyactiqpd rlvnpaskhl
      601 idlskskeiq gaklsrndsp qnssafsask llqnlaqcgm qtsisseeqr askqllvgnt
      661 ekpvglidrl nsplltnkls theennkifg cqpapteqgl pgseienlle rrtvlqlllg
      721 tpnkgksekk ermllrdess qeqtdkalne qiltvkikte pseesyvpyn snaqqvrefk
      781 gntfqgfvhs lqrntaaspa seelksepls pqdfsfskng llsrllrqnq dsypvdeldr
      841 shrnselthl eskslctvpk krklhaeple splkkmknnv sdaannhasp tealygplln
      901 qqelkysrsd aefkytvshg snnesenrsw srdskgfnvl kqlllsence rdlsqhrnni
      961 laeskkkgnk ssvtinkpef sissvnalmg spvqqnncvd hrtfqypvav kspasspfpe
     1021 hlgntvsrle sdqfsmcpmp sekgpirwvi tgmekndydk dsprltktnp ilyymlqkgg
     1081 nsvtsqeahe keiwnepsft dgsarvtike eltsdaelkt pfsnlrspyn shmgsktshq
     1141 hgvngemhgl lekvltikke pe
//
LOCUS       XP_053923388            1162 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear receptor-interacting protein 1 [Cuculus canorus].
ACCESSION   XP_053923388
VERSION     XP_053923388.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067413.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1162
                     /product="nuclear receptor-interacting protein 1"
                     /calculated_mol_wt=127693
     Region          27..329
                     /region_name="NRIP1_repr_1"
                     /note="Nuclear receptor-interacting protein 1 repression
                     1; pfam15687"
                     /db_xref="CDD:434859"
     Region          409..740
                     /region_name="NRIP1_repr_2"
                     /note="Nuclear receptor-interacting protein 1 repression
                     2; pfam15688"
                     /db_xref="CDD:464803"
     Region          755..843
                     /region_name="NRIP1_repr_3"
                     /note="Nuclear receptor-interacting protein 1 repression
                     3; pfam15689"
                     /db_xref="CDD:406181"
     Region          852..1162
                     /region_name="NRIP1_repr_4"
                     /note="Nuclear receptor-interacting protein 1 repression
                     4; pfam15690"
                     /db_xref="CDD:434861"
     CDS             1..1162
                     /gene="NRIP1"
                     /coded_by="XM_054067413.1:495..3983"
                     /db_xref="GeneID:104061592"
ORIGIN      
        1 mthgeelgse mhqdsvvlty legllmhqaa ggsgtaadkk stgrsgedqn fkisgnifps
       61 cqsngpvlnt ntyqgsgmlh lkkarllqss edwnaakrrr lsdsivdldg kkeallagmv
      121 esvpkgkqds tllasllqsf ssrlqsvals qqirqslkeq gyslshdslq vekdlrcygv
      181 asshlktllk kskakdqkld dslpditknl pkerfiesph avqsgpkvin eplscaarlq
      241 avasmvekrs spaaspkpsv acsqlallls seahlqqysr ehalkaqnan qiaserlaam
      301 arlqesaqkd igqlglskga tshlngqtgs stktvsskss mapfqssmgi mhsspknvgy
      361 ksslersnvk tspnnslllh llksqnttkh vkgrersera gifedsstpt tideysdnnp
      421 sfteddssdd esshsnclpi dlsfkqrtdk tdtgppasld nltqsllhnw dpkvscpenk
      481 edkdtpkask lnphqkvtll qlllghksee kvdksndsqg phsaadvakf tvqtgkrtpv
      541 tdspstnrmt plstppllss akadspinls hqplaikrss ppyactiqpd rlvnpaskhl
      601 idlskskeiq gaklsrndsp qnssafsask llqnlaqcgm qtsisseeqr askqllvgnt
      661 ekpvglidrl nsplltnkls theennkifg cqpapteqgl pgseienlle rrtvlqlllg
      721 tpnkgksekk ermllrdess qeqtdkalne qiltvkikte pseesyvpyn snaqqvrefk
      781 gntfqgfvhs lqrntaaspa seelksepls pqdfsfskng llsrllrqnq dsypvdeldr
      841 shrnselthl eskslctvpk krklhaeple splkkmknnv sdaannhasp tealygplln
      901 qqelkysrsd aefkytvshg snnesenrsw srdskgfnvl kqlllsence rdlsqhrnni
      961 laeskkkgnk ssvtinkpef sissvnalmg spvqqnncvd hrtfqypvav kspasspfpe
     1021 hlgntvsrle sdqfsmcpmp sekgpirwvi tgmekndydk dsprltktnp ilyymlqkgg
     1081 nsvtsqeahe keiwnepsft dgsarvtike eltsdaelkt pfsnlrspyn shmgsktshq
     1141 hgvngemhgl lekvltikke pe
//
LOCUS       XP_053923400             527 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 181 [Cuculus canorus].
ACCESSION   XP_053923400
VERSION     XP_053923400.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067425.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..527
                     /product="coiled-coil domain-containing protein 181"
                     /calculated_mol_wt=61484
     Region          <392..507
                     /region_name="CCDC34"
                     /note="Coiled-coil domain-containing protein 3; pfam13904"
                     /db_xref="CDD:464032"
     CDS             1..527
                     /gene="CCDC181"
                     /coded_by="XM_054067425.1:929..2512"
                     /db_xref="GeneID:104055840"
ORIGIN      
        1 msekenegdp aymddlrece eyeddfekdp ewlsdeeeke nlderenpee needheaqvv
       61 kvadkfeeda eemeenpgql sevdvdakvk hsneeslesr sdmkqedhvs dtdsesssqe
      121 sklenhqeld eeedeeikry ilekiekank mlenqapvdq nrerklkfkd klvdlevppl
      181 edaevcktdl agdddvsnrl sqlqissemg qestsfspha vmdeenkdgk ilvekdgkfe
      241 llslcdlenq gslppisvsf tdietqrmsp ksshcsplgt vsgmkevppv rqgahtfspg
      301 gdesvhvpkp psnpkrrpss alsaarglgr rktqlrvqsa napvrsstyc lsprqkelrk
      361 qleqrkekqk keeeerkree eeqkrrenem vfkawlqkkk keqvqeekri rrakeledln
      421 skernrnpee afklwlkkkh qehmkekqie ilrrqaegia lfprteecnr afkewlkrkr
      481 eekraeelaa kerarqfrle arrakqmqsi hcissepkpf rftdhyg
//
LOCUS       XP_053923408             527 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 181 [Cuculus canorus].
ACCESSION   XP_053923408
VERSION     XP_053923408.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067433.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..527
                     /product="coiled-coil domain-containing protein 181"
                     /calculated_mol_wt=61484
     Region          <392..507
                     /region_name="CCDC34"
                     /note="Coiled-coil domain-containing protein 3; pfam13904"
                     /db_xref="CDD:464032"
     CDS             1..527
                     /gene="CCDC181"
                     /coded_by="XM_054067433.1:153..1736"
                     /db_xref="GeneID:104055840"
ORIGIN      
        1 msekenegdp aymddlrece eyeddfekdp ewlsdeeeke nlderenpee needheaqvv
       61 kvadkfeeda eemeenpgql sevdvdakvk hsneeslesr sdmkqedhvs dtdsesssqe
      121 sklenhqeld eeedeeikry ilekiekank mlenqapvdq nrerklkfkd klvdlevppl
      181 edaevcktdl agdddvsnrl sqlqissemg qestsfspha vmdeenkdgk ilvekdgkfe
      241 llslcdlenq gslppisvsf tdietqrmsp ksshcsplgt vsgmkevppv rqgahtfspg
      301 gdesvhvpkp psnpkrrpss alsaarglgr rktqlrvqsa napvrsstyc lsprqkelrk
      361 qleqrkekqk keeeerkree eeqkrrenem vfkawlqkkk keqvqeekri rrakeledln
      421 skernrnpee afklwlkkkh qehmkekqie ilrrqaegia lfprteecnr afkewlkrkr
      481 eekraeelaa kerarqfrle arrakqmqsi hcissepkpf rftdhyg
//
LOCUS       XP_053923416             527 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 181 [Cuculus canorus].
ACCESSION   XP_053923416
VERSION     XP_053923416.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067441.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..527
                     /product="coiled-coil domain-containing protein 181"
                     /calculated_mol_wt=61484
     Region          <392..507
                     /region_name="CCDC34"
                     /note="Coiled-coil domain-containing protein 3; pfam13904"
                     /db_xref="CDD:464032"
     CDS             1..527
                     /gene="CCDC181"
                     /coded_by="XM_054067441.1:162..1745"
                     /db_xref="GeneID:104055840"
ORIGIN      
        1 msekenegdp aymddlrece eyeddfekdp ewlsdeeeke nlderenpee needheaqvv
       61 kvadkfeeda eemeenpgql sevdvdakvk hsneeslesr sdmkqedhvs dtdsesssqe
      121 sklenhqeld eeedeeikry ilekiekank mlenqapvdq nrerklkfkd klvdlevppl
      181 edaevcktdl agdddvsnrl sqlqissemg qestsfspha vmdeenkdgk ilvekdgkfe
      241 llslcdlenq gslppisvsf tdietqrmsp ksshcsplgt vsgmkevppv rqgahtfspg
      301 gdesvhvpkp psnpkrrpss alsaarglgr rktqlrvqsa napvrsstyc lsprqkelrk
      361 qleqrkekqk keeeerkree eeqkrrenem vfkawlqkkk keqvqeekri rrakeledln
      421 skernrnpee afklwlkkkh qehmkekqie ilrrqaegia lfprteecnr afkewlkrkr
      481 eekraeelaa kerarqfrle arrakqmqsi hcissepkpf rftdhyg
//
LOCUS       XP_053923425             527 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 181 [Cuculus canorus].
ACCESSION   XP_053923425
VERSION     XP_053923425.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067450.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..527
                     /product="coiled-coil domain-containing protein 181"
                     /calculated_mol_wt=61484
     Region          <392..507
                     /region_name="CCDC34"
                     /note="Coiled-coil domain-containing protein 3; pfam13904"
                     /db_xref="CDD:464032"
     CDS             1..527
                     /gene="CCDC181"
                     /coded_by="XM_054067450.1:155..1738"
                     /db_xref="GeneID:104055840"
ORIGIN      
        1 msekenegdp aymddlrece eyeddfekdp ewlsdeeeke nlderenpee needheaqvv
       61 kvadkfeeda eemeenpgql sevdvdakvk hsneeslesr sdmkqedhvs dtdsesssqe
      121 sklenhqeld eeedeeikry ilekiekank mlenqapvdq nrerklkfkd klvdlevppl
      181 edaevcktdl agdddvsnrl sqlqissemg qestsfspha vmdeenkdgk ilvekdgkfe
      241 llslcdlenq gslppisvsf tdietqrmsp ksshcsplgt vsgmkevppv rqgahtfspg
      301 gdesvhvpkp psnpkrrpss alsaarglgr rktqlrvqsa napvrsstyc lsprqkelrk
      361 qleqrkekqk keeeerkree eeqkrrenem vfkawlqkkk keqvqeekri rrakeledln
      421 skernrnpee afklwlkkkh qehmkekqie ilrrqaegia lfprteecnr afkewlkrkr
      481 eekraeelaa kerarqfrle arrakqmqsi hcissepkpf rftdhyg
//
LOCUS       XP_053923432             527 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 181 [Cuculus canorus].
ACCESSION   XP_053923432
VERSION     XP_053923432.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067457.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..527
                     /product="coiled-coil domain-containing protein 181"
                     /calculated_mol_wt=61484
     Region          <392..507
                     /region_name="CCDC34"
                     /note="Coiled-coil domain-containing protein 3; pfam13904"
                     /db_xref="CDD:464032"
     CDS             1..527
                     /gene="CCDC181"
                     /coded_by="XM_054067457.1:114..1697"
                     /db_xref="GeneID:104055840"
ORIGIN      
        1 msekenegdp aymddlrece eyeddfekdp ewlsdeeeke nlderenpee needheaqvv
       61 kvadkfeeda eemeenpgql sevdvdakvk hsneeslesr sdmkqedhvs dtdsesssqe
      121 sklenhqeld eeedeeikry ilekiekank mlenqapvdq nrerklkfkd klvdlevppl
      181 edaevcktdl agdddvsnrl sqlqissemg qestsfspha vmdeenkdgk ilvekdgkfe
      241 llslcdlenq gslppisvsf tdietqrmsp ksshcsplgt vsgmkevppv rqgahtfspg
      301 gdesvhvpkp psnpkrrpss alsaarglgr rktqlrvqsa napvrsstyc lsprqkelrk
      361 qleqrkekqk keeeerkree eeqkrrenem vfkawlqkkk keqvqeekri rrakeledln
      421 skernrnpee afklwlkkkh qehmkekqie ilrrqaegia lfprteecnr afkewlkrkr
      481 eekraeelaa kerarqfrle arrakqmqsi hcissepkpf rftdhyg
//
LOCUS       XP_053923446             480 aa            linear   VRT 09-MAR-2023
DEFINITION  thiamine transporter 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053923446
VERSION     XP_053923446.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067471.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..480
                     /product="thiamine transporter 1 isoform X1"
                     /calculated_mol_wt=54094
     Region          8..442
                     /region_name="Folate_carrier"
                     /note="Reduced folate carrier; pfam01770"
                     /db_xref="CDD:460318"
     CDS             1..480
                     /gene="SLC19A2"
                     /coded_by="XM_054067471.1:39..1481"
                     /db_xref="GeneID:104055841"
ORIGIN      
        1 magrrgrrgw alptallcay gflcsvrpse pfltpyllgp yknlsetqvf neiypvwtys
       61 ylvllfpvfl atdylrykpv vllqglslii twfmllyaqg lraiqfleff ygmgtatdia
      121 yysyiysvvd vnlyqkvtsy crsatlvgyt vgsvsgqvlv svaewslfsl nvisltsisv
      181 afgtawflpm pqkslffhhv psqqlgwemk vmdckngsav qdhpnvqrtp gweddtkvpl
      241 ngevrsaekr stqeqkvdil kvlkdlwqdf lqcyssrtmi cwsvwwalst cgyfqvinyv
      301 qglwemvlps ysseiyngav eaastllgav avfvvghikt swatwgeval alfsfliaaa
      361 vyimdtvqni wvcyasyvvf riiymlliti atfqiatnls veryalvfgv ntftalalqt
      421 lltlvvvdas glgldiftqf miyasyfaai slvflgsgiy siirayrrre qmqsrspesq
//
LOCUS       XP_053923454             480 aa            linear   VRT 09-MAR-2023
DEFINITION  thiamine transporter 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053923454
VERSION     XP_053923454.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067479.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..480
                     /product="thiamine transporter 1 isoform X1"
                     /calculated_mol_wt=54094
     Region          8..442
                     /region_name="Folate_carrier"
                     /note="Reduced folate carrier; pfam01770"
                     /db_xref="CDD:460318"
     CDS             1..480
                     /gene="SLC19A2"
                     /coded_by="XM_054067479.1:39..1481"
                     /db_xref="GeneID:104055841"
ORIGIN      
        1 magrrgrrgw alptallcay gflcsvrpse pfltpyllgp yknlsetqvf neiypvwtys
       61 ylvllfpvfl atdylrykpv vllqglslii twfmllyaqg lraiqfleff ygmgtatdia
      121 yysyiysvvd vnlyqkvtsy crsatlvgyt vgsvsgqvlv svaewslfsl nvisltsisv
      181 afgtawflpm pqkslffhhv psqqlgwemk vmdckngsav qdhpnvqrtp gweddtkvpl
      241 ngevrsaekr stqeqkvdil kvlkdlwqdf lqcyssrtmi cwsvwwalst cgyfqvinyv
      301 qglwemvlps ysseiyngav eaastllgav avfvvghikt swatwgeval alfsfliaaa
      361 vyimdtvqni wvcyasyvvf riiymlliti atfqiatnls veryalvfgv ntftalalqt
      421 lltlvvvdas glgldiftqf miyasyfaai slvflgsgiy siirayrrre qmqsrspesq
//
LOCUS       XP_053923464             480 aa            linear   VRT 09-MAR-2023
DEFINITION  thiamine transporter 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053923464
VERSION     XP_053923464.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067489.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..480
                     /product="thiamine transporter 1 isoform X1"
                     /calculated_mol_wt=54094
     Region          8..442
                     /region_name="Folate_carrier"
                     /note="Reduced folate carrier; pfam01770"
                     /db_xref="CDD:460318"
     CDS             1..480
                     /gene="SLC19A2"
                     /coded_by="XM_054067489.1:39..1481"
                     /db_xref="GeneID:104055841"
ORIGIN      
        1 magrrgrrgw alptallcay gflcsvrpse pfltpyllgp yknlsetqvf neiypvwtys
       61 ylvllfpvfl atdylrykpv vllqglslii twfmllyaqg lraiqfleff ygmgtatdia
      121 yysyiysvvd vnlyqkvtsy crsatlvgyt vgsvsgqvlv svaewslfsl nvisltsisv
      181 afgtawflpm pqkslffhhv psqqlgwemk vmdckngsav qdhpnvqrtp gweddtkvpl
      241 ngevrsaekr stqeqkvdil kvlkdlwqdf lqcyssrtmi cwsvwwalst cgyfqvinyv
      301 qglwemvlps ysseiyngav eaastllgav avfvvghikt swatwgeval alfsfliaaa
      361 vyimdtvqni wvcyasyvvf riiymlliti atfqiatnls veryalvfgv ntftalalqt
      421 lltlvvvdas glgldiftqf miyasyfaai slvflgsgiy siirayrrre qmqsrspesq
//
LOCUS       XP_053923475             480 aa            linear   VRT 09-MAR-2023
DEFINITION  thiamine transporter 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053923475
VERSION     XP_053923475.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067500.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..480
                     /product="thiamine transporter 1 isoform X1"
                     /calculated_mol_wt=54094
     Region          8..442
                     /region_name="Folate_carrier"
                     /note="Reduced folate carrier; pfam01770"
                     /db_xref="CDD:460318"
     CDS             1..480
                     /gene="SLC19A2"
                     /coded_by="XM_054067500.1:39..1481"
                     /db_xref="GeneID:104055841"
ORIGIN      
        1 magrrgrrgw alptallcay gflcsvrpse pfltpyllgp yknlsetqvf neiypvwtys
       61 ylvllfpvfl atdylrykpv vllqglslii twfmllyaqg lraiqfleff ygmgtatdia
      121 yysyiysvvd vnlyqkvtsy crsatlvgyt vgsvsgqvlv svaewslfsl nvisltsisv
      181 afgtawflpm pqkslffhhv psqqlgwemk vmdckngsav qdhpnvqrtp gweddtkvpl
      241 ngevrsaekr stqeqkvdil kvlkdlwqdf lqcyssrtmi cwsvwwalst cgyfqvinyv
      301 qglwemvlps ysseiyngav eaastllgav avfvvghikt swatwgeval alfsfliaaa
      361 vyimdtvqni wvcyasyvvf riiymlliti atfqiatnls veryalvfgv ntftalalqt
      421 lltlvvvdas glgldiftqf miyasyfaai slvflgsgiy siirayrrre qmqsrspesq
//
LOCUS       XP_053923484             480 aa            linear   VRT 09-MAR-2023
DEFINITION  thiamine transporter 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053923484
VERSION     XP_053923484.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067509.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..480
                     /product="thiamine transporter 1 isoform X1"
                     /calculated_mol_wt=54094
     Region          8..442
                     /region_name="Folate_carrier"
                     /note="Reduced folate carrier; pfam01770"
                     /db_xref="CDD:460318"
     CDS             1..480
                     /gene="SLC19A2"
                     /coded_by="XM_054067509.1:39..1481"
                     /db_xref="GeneID:104055841"
ORIGIN      
        1 magrrgrrgw alptallcay gflcsvrpse pfltpyllgp yknlsetqvf neiypvwtys
       61 ylvllfpvfl atdylrykpv vllqglslii twfmllyaqg lraiqfleff ygmgtatdia
      121 yysyiysvvd vnlyqkvtsy crsatlvgyt vgsvsgqvlv svaewslfsl nvisltsisv
      181 afgtawflpm pqkslffhhv psqqlgwemk vmdckngsav qdhpnvqrtp gweddtkvpl
      241 ngevrsaekr stqeqkvdil kvlkdlwqdf lqcyssrtmi cwsvwwalst cgyfqvinyv
      301 qglwemvlps ysseiyngav eaastllgav avfvvghikt swatwgeval alfsfliaaa
      361 vyimdtvqni wvcyasyvvf riiymlliti atfqiatnls veryalvfgv ntftalalqt
      421 lltlvvvdas glgldiftqf miyasyfaai slvflgsgiy siirayrrre qmqsrspesq
//
LOCUS       XP_053923491             444 aa            linear   VRT 09-MAR-2023
DEFINITION  thiamine transporter 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053923491
VERSION     XP_053923491.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067516.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..444
                     /product="thiamine transporter 1 isoform X2"
                     /calculated_mol_wt=49894
     Region          8..439
                     /region_name="Folate_carrier"
                     /note="Reduced folate carrier; pfam01770"
                     /db_xref="CDD:460318"
     CDS             1..444
                     /gene="SLC19A2"
                     /coded_by="XM_054067516.1:40..1374"
                     /db_xref="GeneID:104055841"
ORIGIN      
        1 magrrgrrgw alptallcay gflcsvrpse pfltpyllgp yknlsetqvf neiypvwtys
       61 ylvllfpvfl atdylrykpv vllqglslii twfmllyaqg lraiqfleff ygmgtatdia
      121 yysyiysvvd vnlyqkvtsy crsatlvgyt vgsvsgqvlv svaewslfsl nvisltsisv
      181 afgtawflpm pqkslffhhv psqqlgwemk vmdckngsav qdhpnvqrtp gweddtkvpl
      241 ngevrsaekr stqeqkvdil kvlkdlwqdf lqcyssrtmi cwsvwwalst cgyfqvinyv
      301 qglwemvlps ysseiyngav eaastllgav avfvvghikt swatwgeval alfsfliaaa
      361 vyimdtvqni wvcyasyvvf riiymlliti atfqiatnls veryalvfgv ntftalalqt
      421 lltlvvvdas glgldiftqg crfl
//
LOCUS       XP_053923503             397 aa            linear   VRT 09-MAR-2023
DEFINITION  golgin-45 [Cuculus canorus].
ACCESSION   XP_053923503
VERSION     XP_053923503.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067528.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..397
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..397
                     /product="golgin-45"
                     /calculated_mol_wt=44035
     Region          <118..>257
                     /region_name="COG4913"
                     /note="Uncharacterized conserved protein, contains a
                     C-terminal ATPase domain [Function unknown]"
                     /db_xref="CDD:443941"
     Region          178..223
                     /region_name="DASH_Hsk3"
                     /note="DASH complex subunit Hsk3 like; pfam08227"
                     /db_xref="CDD:429874"
     CDS             1..397
                     /gene="BLZF1"
                     /coded_by="XM_054067528.1:171..1364"
                     /db_xref="GeneID:104055785"
ORIGIN      
        1 mtspekvdda sspirgpgdg meteqpavsv evstgtntvn hhihhsphkk tgsslspgvl
       61 qlgkvhadks veieairilv pkaaithvvp aknakvaksv lhkgdafhqs egavdpkkeq
      121 ielknaiekl knsekrllqd keglsnqlrv qtevnrelkk llvasvgndl qyhfermare
      181 knqlilenev lgrnisqlse qlermsiqcd vwrskflasr vmadeltntr tilqrqtrda
      241 qsaiqdllne rdqfrqemid tqklleelmv slqwgrqqty ypsaqpyttt elaavnckla
      301 kavssrllgn vgtsspkkts vavelsntpa ekmaemvlrv ldpaactets tevsfpdtsp
      361 ssflstkksi grfhpytrye dvtfnccshc qgelivv
//
LOCUS       XP_053923512             397 aa            linear   VRT 09-MAR-2023
DEFINITION  golgin-45 [Cuculus canorus].
ACCESSION   XP_053923512
VERSION     XP_053923512.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067537.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..397
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..397
                     /product="golgin-45"
                     /calculated_mol_wt=44035
     Region          <118..>257
                     /region_name="COG4913"
                     /note="Uncharacterized conserved protein, contains a
                     C-terminal ATPase domain [Function unknown]"
                     /db_xref="CDD:443941"
     Region          178..223
                     /region_name="DASH_Hsk3"
                     /note="DASH complex subunit Hsk3 like; pfam08227"
                     /db_xref="CDD:429874"
     CDS             1..397
                     /gene="BLZF1"
                     /coded_by="XM_054067537.1:82..1275"
                     /db_xref="GeneID:104055785"
ORIGIN      
        1 mtspekvdda sspirgpgdg meteqpavsv evstgtntvn hhihhsphkk tgsslspgvl
       61 qlgkvhadks veieairilv pkaaithvvp aknakvaksv lhkgdafhqs egavdpkkeq
      121 ielknaiekl knsekrllqd keglsnqlrv qtevnrelkk llvasvgndl qyhfermare
      181 knqlilenev lgrnisqlse qlermsiqcd vwrskflasr vmadeltntr tilqrqtrda
      241 qsaiqdllne rdqfrqemid tqklleelmv slqwgrqqty ypsaqpyttt elaavnckla
      301 kavssrllgn vgtsspkkts vavelsntpa ekmaemvlrv ldpaactets tevsfpdtsp
      361 ssflstkksi grfhpytrye dvtfnccshc qgelivv
//
LOCUS       XP_053923525            1129 aa            linear   VRT 09-MAR-2023
DEFINITION  ELKS/Rab6-interacting/CAST family member 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053923525
VERSION     XP_053923525.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067550.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1129
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1129
                     /product="ELKS/Rab6-interacting/CAST family member 1
                     isoform X1"
                     /calculated_mol_wt=129612
     Region          154..994
                     /region_name="Cast"
                     /note="RIM-binding protein of the cytomatrix active zone;
                     pfam10174"
                     /db_xref="CDD:431111"
     Region          1081..1121
                     /region_name="RBD-FIP"
                     /note="FIP domain; pfam09457"
                     /db_xref="CDD:462805"
     CDS             1..1129
                     /gene="ERC1"
                     /coded_by="XM_054067550.1:325..3714"
                     /db_xref="GeneID:104055906"
ORIGIN      
        1 mygsarsvgk vepsnqspgr sprlprsprl ghrrtnstgg ssgsstgggs gktlsmeniq
       61 slnaayatsg pmylsdhenv gadtpkstmt lgrsggrlpy gvrmtamgss pniassgvas
      121 dtiafgehhl ppvsmastvp hslrqardnt imdlqtqlke vlrendllrk dvevkeskls
      181 ssmnsiktfw spelkkeral rkdeaskiti wkeqyrvlqe enqhmqmtiq alqdelriqr
      241 dlnqlfqqds strtsepfva elteenfqrl haeherqake lfllrktlee melrietqkq
      301 tlnardesik kllemlqskg lsakateedh ertrrlaeae mhvhhlesll eqkekennml
      361 reeihrrfen apdtaktkal qtviemkdsk issmerglrd leeeiqmlks ngalsteere
      421 eemkqmevyr shskfmknkv eqlkeelsak eaqgedlkkr vaglqteigq vkqelsrkdt
      481 ellalqtkle tltnqfsdsk qhievlkesl takeqraail qtevdalrlr leeketmlnk
      541 ktkqiqemae ekgtqageih dlkdmlevke rkvnvlqkki enlqeqlrdk ekqmsslker
      601 vkslqadttn tdtalttlee alaekertie rlkeqrdrde rekqeeidny kkdikdlkek
      661 vsvlqgdlte kesslldlke hasslassgl kkdsrlktle ialeqkkeec lkmetqlkkh
      721 pevllshpsk paheatlear aspelsdrmq qlerevtryr eesskaqaev drlleilkem
      781 enekndkdkk iaelerqvkd qnkkvanlkh keqvekkksa qmleearrre dnlndssqql
      841 qdnlrkkddr ieeleealre svqitaerem vlaqeesari naekqveelm mamekvkqel
      901 esmkaklsst qqslaeketh ltnlraerrk hleevlemkq eallaaisek daniallels
      961 sskkktqdev aalkrekdrl vqqlkqqtqn rmklmadnye ddhlkssshs nqtnhkpspd
     1021 qiiqplleld qnrsklklyi ghltalchdr dplilrgltp pasyhldddr aawekelqkm
     1081 tqeqlhdele kgekesaelq efanailqqi adhcpdileq vvnaleess
//
LOCUS       XP_053923535            1129 aa            linear   VRT 09-MAR-2023
DEFINITION  ELKS/Rab6-interacting/CAST family member 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053923535
VERSION     XP_053923535.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067560.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1129
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1129
                     /product="ELKS/Rab6-interacting/CAST family member 1
                     isoform X1"
                     /calculated_mol_wt=129612
     Region          154..994
                     /region_name="Cast"
                     /note="RIM-binding protein of the cytomatrix active zone;
                     pfam10174"
                     /db_xref="CDD:431111"
     Region          1081..1121
                     /region_name="RBD-FIP"
                     /note="FIP domain; pfam09457"
                     /db_xref="CDD:462805"
     CDS             1..1129
                     /gene="ERC1"
                     /coded_by="XM_054067560.1:216..3605"
                     /db_xref="GeneID:104055906"
ORIGIN      
        1 mygsarsvgk vepsnqspgr sprlprsprl ghrrtnstgg ssgsstgggs gktlsmeniq
       61 slnaayatsg pmylsdhenv gadtpkstmt lgrsggrlpy gvrmtamgss pniassgvas
      121 dtiafgehhl ppvsmastvp hslrqardnt imdlqtqlke vlrendllrk dvevkeskls
      181 ssmnsiktfw spelkkeral rkdeaskiti wkeqyrvlqe enqhmqmtiq alqdelriqr
      241 dlnqlfqqds strtsepfva elteenfqrl haeherqake lfllrktlee melrietqkq
      301 tlnardesik kllemlqskg lsakateedh ertrrlaeae mhvhhlesll eqkekennml
      361 reeihrrfen apdtaktkal qtviemkdsk issmerglrd leeeiqmlks ngalsteere
      421 eemkqmevyr shskfmknkv eqlkeelsak eaqgedlkkr vaglqteigq vkqelsrkdt
      481 ellalqtkle tltnqfsdsk qhievlkesl takeqraail qtevdalrlr leeketmlnk
      541 ktkqiqemae ekgtqageih dlkdmlevke rkvnvlqkki enlqeqlrdk ekqmsslker
      601 vkslqadttn tdtalttlee alaekertie rlkeqrdrde rekqeeidny kkdikdlkek
      661 vsvlqgdlte kesslldlke hasslassgl kkdsrlktle ialeqkkeec lkmetqlkkh
      721 pevllshpsk paheatlear aspelsdrmq qlerevtryr eesskaqaev drlleilkem
      781 enekndkdkk iaelerqvkd qnkkvanlkh keqvekkksa qmleearrre dnlndssqql
      841 qdnlrkkddr ieeleealre svqitaerem vlaqeesari naekqveelm mamekvkqel
      901 esmkaklsst qqslaeketh ltnlraerrk hleevlemkq eallaaisek daniallels
      961 sskkktqdev aalkrekdrl vqqlkqqtqn rmklmadnye ddhlkssshs nqtnhkpspd
     1021 qiiqplleld qnrsklklyi ghltalchdr dplilrgltp pasyhldddr aawekelqkm
     1081 tqeqlhdele kgekesaelq efanailqqi adhcpdileq vvnaleess
//
LOCUS       XP_053923544            1129 aa            linear   VRT 09-MAR-2023
DEFINITION  ELKS/Rab6-interacting/CAST family member 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053923544
VERSION     XP_053923544.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067569.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1129
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1129
                     /product="ELKS/Rab6-interacting/CAST family member 1
                     isoform X1"
                     /calculated_mol_wt=129612
     Region          154..994
                     /region_name="Cast"
                     /note="RIM-binding protein of the cytomatrix active zone;
                     pfam10174"
                     /db_xref="CDD:431111"
     Region          1081..1121
                     /region_name="RBD-FIP"
                     /note="FIP domain; pfam09457"
                     /db_xref="CDD:462805"
     CDS             1..1129
                     /gene="ERC1"
                     /coded_by="XM_054067569.1:190..3579"
                     /db_xref="GeneID:104055906"
ORIGIN      
        1 mygsarsvgk vepsnqspgr sprlprsprl ghrrtnstgg ssgsstgggs gktlsmeniq
       61 slnaayatsg pmylsdhenv gadtpkstmt lgrsggrlpy gvrmtamgss pniassgvas
      121 dtiafgehhl ppvsmastvp hslrqardnt imdlqtqlke vlrendllrk dvevkeskls
      181 ssmnsiktfw spelkkeral rkdeaskiti wkeqyrvlqe enqhmqmtiq alqdelriqr
      241 dlnqlfqqds strtsepfva elteenfqrl haeherqake lfllrktlee melrietqkq
      301 tlnardesik kllemlqskg lsakateedh ertrrlaeae mhvhhlesll eqkekennml
      361 reeihrrfen apdtaktkal qtviemkdsk issmerglrd leeeiqmlks ngalsteere
      421 eemkqmevyr shskfmknkv eqlkeelsak eaqgedlkkr vaglqteigq vkqelsrkdt
      481 ellalqtkle tltnqfsdsk qhievlkesl takeqraail qtevdalrlr leeketmlnk
      541 ktkqiqemae ekgtqageih dlkdmlevke rkvnvlqkki enlqeqlrdk ekqmsslker
      601 vkslqadttn tdtalttlee alaekertie rlkeqrdrde rekqeeidny kkdikdlkek
      661 vsvlqgdlte kesslldlke hasslassgl kkdsrlktle ialeqkkeec lkmetqlkkh
      721 pevllshpsk paheatlear aspelsdrmq qlerevtryr eesskaqaev drlleilkem
      781 enekndkdkk iaelerqvkd qnkkvanlkh keqvekkksa qmleearrre dnlndssqql
      841 qdnlrkkddr ieeleealre svqitaerem vlaqeesari naekqveelm mamekvkqel
      901 esmkaklsst qqslaeketh ltnlraerrk hleevlemkq eallaaisek daniallels
      961 sskkktqdev aalkrekdrl vqqlkqqtqn rmklmadnye ddhlkssshs nqtnhkpspd
     1021 qiiqplleld qnrsklklyi ghltalchdr dplilrgltp pasyhldddr aawekelqkm
     1081 tqeqlhdele kgekesaelq efanailqqi adhcpdileq vvnaleess
//
LOCUS       XP_053923555            1117 aa            linear   VRT 09-MAR-2023
DEFINITION  ELKS/Rab6-interacting/CAST family member 1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053923555
VERSION     XP_053923555.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067580.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1117
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1117
                     /product="ELKS/Rab6-interacting/CAST family member 1
                     isoform X2"
                     /calculated_mol_wt=128289
     Region          154..982
                     /region_name="Cast"
                     /note="RIM-binding protein of the cytomatrix active zone;
                     pfam10174"
                     /db_xref="CDD:431111"
     Region          1069..1109
                     /region_name="RBD-FIP"
                     /note="FIP domain; pfam09457"
                     /db_xref="CDD:462805"
     CDS             1..1117
                     /gene="ERC1"
                     /coded_by="XM_054067580.1:325..3678"
                     /db_xref="GeneID:104055906"
ORIGIN      
        1 mygsarsvgk vepsnqspgr sprlprsprl ghrrtnstgg ssgsstgggs gktlsmeniq
       61 slnaayatsg pmylsdhenv gadtpkstmt lgrsggrlpy gvrmtamgss pniassgvas
      121 dtiafgehhl ppvsmastvp hslrqardnt imdlqtqlke vlrendllrk dvevkeskls
      181 ssmnsiktfw spelkkeral rkdeaskiti wkeqyrvlqe enqhmqmtiq alqdelriqr
      241 dlnqlfqqds strtsepfva elteenfqrl haeherqake lfllrktlee melrietqkq
      301 tlnardesik kllemlqskg lsakateedh ertrrlaeae mhvhhlesll eqkekennml
      361 reeihrrfen apdtaktkal qtviemkdsk issmerglrd leeeiqmlks ngalsteere
      421 eemkqmevyr shskfmknkv eqlkeelsak eaqgedlkkr vaglqteigq vkqelsrkdt
      481 ellalqtkle tltnqfsdsk qhievlkesl takeqraail qtevdalrlr leeketmlnk
      541 ktkqiqemae ekgtqageih dlkdmlevke rkvnvlqkki enlqeqlrdk ekqmsslker
      601 vkslqadttn tdtalttlee alaekertie rlkeqrdrde rekqeeidny kkdikdlkek
      661 vsvlqgdlte kesslldlke hasslassgl kkdsrlktle ialeqkkeec lkmetqlkka
      721 heatlearas pelsdrmqql erevtryree sskaqaevdr lleilkemen ekndkdkkia
      781 elerqvkdqn kkvanlkhke qvekkksaqm leearrredn lndssqqlqd nlrkkddrie
      841 eleealresv qitaeremvl aqeesarina ekqveelmma mekvkqeles mkaklsstqq
      901 slaekethlt nlraerrkhl eevlemkqea llaaisekda niallelsss kkktqdevaa
      961 lkrekdrlvq qlkqqtqnrm klmadnyedd hlkssshsnq tnhkpspdqi iqplleldqn
     1021 rsklklyigh ltalchdrdp lilrgltppa syhldddraa wekelqkmtq eqlhdelekg
     1081 ekesaelqef anailqqiad hcpdileqvv naleess
//
LOCUS       XP_053923566            1101 aa            linear   VRT 09-MAR-2023
DEFINITION  ELKS/Rab6-interacting/CAST family member 1 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053923566
VERSION     XP_053923566.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067591.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1101
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1101
                     /product="ELKS/Rab6-interacting/CAST family member 1
                     isoform X3"
                     /calculated_mol_wt=126502
     Region          154..966
                     /region_name="Cast"
                     /note="RIM-binding protein of the cytomatrix active zone;
                     pfam10174"
                     /db_xref="CDD:431111"
     Region          795..>857
                     /region_name="PRK11091"
                     /note="aerobic respiration control sensor protein ArcB;
                     Provisional"
                     /db_xref="CDD:236842"
     Region          1053..1093
                     /region_name="RBD-FIP"
                     /note="FIP domain; pfam09457"
                     /db_xref="CDD:462805"
     CDS             1..1101
                     /gene="ERC1"
                     /coded_by="XM_054067591.1:325..3630"
                     /db_xref="GeneID:104055906"
ORIGIN      
        1 mygsarsvgk vepsnqspgr sprlprsprl ghrrtnstgg ssgsstgggs gktlsmeniq
       61 slnaayatsg pmylsdhenv gadtpkstmt lgrsggrlpy gvrmtamgss pniassgvas
      121 dtiafgehhl ppvsmastvp hslrqardnt imdlqtqlke vlrendllrk dvevkeskls
      181 ssmnsiktfw spelkkeral rkdeaskiti wkeqyrvlqe enqhmqmtiq alqdelriqr
      241 dlnqlfqqds strtsepfva elteenfqrl haeherqake lfllrktlee melrietqkq
      301 tlnardesik kllemlqskg lsakateedh ertrrlaeae mhvhhlesll eqkekennml
      361 reeihrrfen apdtaktkal qtviemkdsk issmerglrd leeeiqmlks ngalsteere
      421 eemkqmevyr shskfmknki gqvkqelsrk dtellalqtk letltnqfsd skqhievlke
      481 sltakeqraa ilqtevdalr lrleeketml nkktkqiqem aeekgtqage ihdlkdmlev
      541 kerkvnvlqk kienlqeqlr dkekqmsslk ervkslqadt tntdtalttl eealaekert
      601 ierlkeqrdr derekqeeid nykkdikdlk ekvsvlqgdl tekesslldl kehasslass
      661 glkkdsrlkt leialeqkke eclkmetqlk khpevllshp skpaheatle araspelsdr
      721 mqqlerevtr yreesskaqa evdrlleilk emenekndkd kkiaelerqv kdqnkkvanl
      781 khkeqvekkk saqmleearr rednlndssq qlqdnlrkkd drieeleeal resvqitaer
      841 emvlaqeesa rinaekqvee lmmamekvkq elesmkakls stqqslaeke thltnlraer
      901 rkhleevlem kqeallaais ekdanialle lssskkktqd evaalkrekd rlvqqlkqqt
      961 qnrmklmadn yeddhlksss hsnqtnhkps pdqiiqplle ldqnrsklkl yighltalch
     1021 drdplilrgl tppasyhldd draawekelq kmtqeqlhde lekgekesae lqefanailq
     1081 qiadhcpdil eqvvnalees s
//
LOCUS       XP_053923575            1089 aa            linear   VRT 09-MAR-2023
DEFINITION  ELKS/Rab6-interacting/CAST family member 1 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053923575
VERSION     XP_053923575.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067600.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1089
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1089
                     /product="ELKS/Rab6-interacting/CAST family member 1
                     isoform X4"
                     /calculated_mol_wt=125180
     Region          154..954
                     /region_name="Cast"
                     /note="RIM-binding protein of the cytomatrix active zone;
                     pfam10174"
                     /db_xref="CDD:431111"
     Region          783..>845
                     /region_name="PRK11091"
                     /note="aerobic respiration control sensor protein ArcB;
                     Provisional"
                     /db_xref="CDD:236842"
     Region          1041..1081
                     /region_name="RBD-FIP"
                     /note="FIP domain; pfam09457"
                     /db_xref="CDD:462805"
     CDS             1..1089
                     /gene="ERC1"
                     /coded_by="XM_054067600.1:325..3594"
                     /db_xref="GeneID:104055906"
ORIGIN      
        1 mygsarsvgk vepsnqspgr sprlprsprl ghrrtnstgg ssgsstgggs gktlsmeniq
       61 slnaayatsg pmylsdhenv gadtpkstmt lgrsggrlpy gvrmtamgss pniassgvas
      121 dtiafgehhl ppvsmastvp hslrqardnt imdlqtqlke vlrendllrk dvevkeskls
      181 ssmnsiktfw spelkkeral rkdeaskiti wkeqyrvlqe enqhmqmtiq alqdelriqr
      241 dlnqlfqqds strtsepfva elteenfqrl haeherqake lfllrktlee melrietqkq
      301 tlnardesik kllemlqskg lsakateedh ertrrlaeae mhvhhlesll eqkekennml
      361 reeihrrfen apdtaktkal qtviemkdsk issmerglrd leeeiqmlks ngalsteere
      421 eemkqmevyr shskfmknki gqvkqelsrk dtellalqtk letltnqfsd skqhievlke
      481 sltakeqraa ilqtevdalr lrleeketml nkktkqiqem aeekgtqage ihdlkdmlev
      541 kerkvnvlqk kienlqeqlr dkekqmsslk ervkslqadt tntdtalttl eealaekert
      601 ierlkeqrdr derekqeeid nykkdikdlk ekvsvlqgdl tekesslldl kehasslass
      661 glkkdsrlkt leialeqkke eclkmetqlk kaheatlear aspelsdrmq qlerevtryr
      721 eesskaqaev drlleilkem enekndkdkk iaelerqvkd qnkkvanlkh keqvekkksa
      781 qmleearrre dnlndssqql qdnlrkkddr ieeleealre svqitaerem vlaqeesari
      841 naekqveelm mamekvkqel esmkaklsst qqslaeketh ltnlraerrk hleevlemkq
      901 eallaaisek daniallels sskkktqdev aalkrekdrl vqqlkqqtqn rmklmadnye
      961 ddhlkssshs nqtnhkpspd qiiqplleld qnrsklklyi ghltalchdr dplilrgltp
     1021 pasyhldddr aawekelqkm tqeqlhdele kgekesaelq efanailqqi adhcpdileq
     1081 vvnaleess
//
LOCUS       XP_053923580            1085 aa            linear   VRT 09-MAR-2023
DEFINITION  ELKS/Rab6-interacting/CAST family member 1 isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053923580
VERSION     XP_053923580.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067605.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1085
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1085
                     /product="ELKS/Rab6-interacting/CAST family member 1
                     isoform X5"
                     /calculated_mol_wt=124445
     Region          154..950
                     /region_name="Cast"
                     /note="RIM-binding protein of the cytomatrix active zone;
                     pfam10174"
                     /db_xref="CDD:431111"
     Region          1037..1077
                     /region_name="RBD-FIP"
                     /note="FIP domain; pfam09457"
                     /db_xref="CDD:462805"
     CDS             1..1085
                     /gene="ERC1"
                     /coded_by="XM_054067605.1:325..3582"
                     /db_xref="GeneID:104055906"
ORIGIN      
        1 mygsarsvgk vepsnqspgr sprlprsprl ghrrtnstgg ssgsstgggs gktlsmeniq
       61 slnaayatsg pmylsdhenv gadtpkstmt lgrsggrlpy gvrmtamgss pniassgvas
      121 dtiafgehhl ppvsmastvp hslrqardnt imdlqtqlke vlrendllrk dvevkeskls
      181 ssmnsiktfw spelkkeral rkdeaskiti wkeqyrvlqe enqhmqmtiq alqdelriqr
      241 dlnqlfqqds strtsepfva elteenfqrl haeherqake lfllrktlee melrietqkq
      301 tlnardesik kllemlqskg lsakateedh ertrrlaeae mhvhhlesll eqkekennml
      361 reeihrrfen apdtaktkal qtviemkdsk issmerglrd leeeiqmlks ngalsteere
      421 eemkqmevyr shskfmknkv eqlkeelsak eaqgedlkkr vaglqteigq vkqelsrkdt
      481 ellalqtkle tltnqfsdsk qhievlkesl takeqraail qtevdalrlr leeketmlnk
      541 ktkqiqemae ekgtqageih dlkdmlevke rkvnvlqkki enlqeqlrdk ekqmsslker
      601 vkslqadttn tdtalttlee alaekertie rlkeqrdrde rekqeeidny kkdikdlkek
      661 vsvlqgdlte kesslldlke hasslassgl kkdsrlktle ialeqkkeec lkmetqlkkh
      721 pevllshpsk paheatlear aspelsdrmq qlerevtryr eesskaqaev drlleilkem
      781 enekndkdkk iaelerqvkd qnkkvanlkh keqvekkksa qmleearrre dnlndssqql
      841 qveelmmame kvkqelesmk aklsstqqsl aekethltnl raerrkhlee vlemkqeall
      901 aaisekdani allelssskk ktqdevaalk rekdrlvqql kqqtqnrmkl madnyeddhl
      961 kssshsnqtn hkpspdqiiq plleldqnrs klklyighlt alchdrdpli lrgltppasy
     1021 hldddraawe kelqkmtqeq lhdelekgek esaelqefan ailqqiadhc pdileqvvna
     1081 leess
//
LOCUS       XP_053923588            1029 aa            linear   VRT 09-MAR-2023
DEFINITION  ELKS/Rab6-interacting/CAST family member 1 isoform X6 [Cuculus
            canorus].
ACCESSION   XP_053923588
VERSION     XP_053923588.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067613.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1029
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1029
                     /product="ELKS/Rab6-interacting/CAST family member 1
                     isoform X6"
                     /calculated_mol_wt=118193
     Region          154..994
                     /region_name="Cast"
                     /note="RIM-binding protein of the cytomatrix active zone;
                     pfam10174"
                     /db_xref="CDD:431111"
     Region          823..>885
                     /region_name="PRK11091"
                     /note="aerobic respiration control sensor protein ArcB;
                     Provisional"
                     /db_xref="CDD:236842"
     CDS             1..1029
                     /gene="ERC1"
                     /coded_by="XM_054067613.1:325..3414"
                     /db_xref="GeneID:104055906"
ORIGIN      
        1 mygsarsvgk vepsnqspgr sprlprsprl ghrrtnstgg ssgsstgggs gktlsmeniq
       61 slnaayatsg pmylsdhenv gadtpkstmt lgrsggrlpy gvrmtamgss pniassgvas
      121 dtiafgehhl ppvsmastvp hslrqardnt imdlqtqlke vlrendllrk dvevkeskls
      181 ssmnsiktfw spelkkeral rkdeaskiti wkeqyrvlqe enqhmqmtiq alqdelriqr
      241 dlnqlfqqds strtsepfva elteenfqrl haeherqake lfllrktlee melrietqkq
      301 tlnardesik kllemlqskg lsakateedh ertrrlaeae mhvhhlesll eqkekennml
      361 reeihrrfen apdtaktkal qtviemkdsk issmerglrd leeeiqmlks ngalsteere
      421 eemkqmevyr shskfmknkv eqlkeelsak eaqgedlkkr vaglqteigq vkqelsrkdt
      481 ellalqtkle tltnqfsdsk qhievlkesl takeqraail qtevdalrlr leeketmlnk
      541 ktkqiqemae ekgtqageih dlkdmlevke rkvnvlqkki enlqeqlrdk ekqmsslker
      601 vkslqadttn tdtalttlee alaekertie rlkeqrdrde rekqeeidny kkdikdlkek
      661 vsvlqgdlte kesslldlke hasslassgl kkdsrlktle ialeqkkeec lkmetqlkkh
      721 pevllshpsk paheatlear aspelsdrmq qlerevtryr eesskaqaev drlleilkem
      781 enekndkdkk iaelerqvkd qnkkvanlkh keqvekkksa qmleearrre dnlndssqql
      841 qdnlrkkddr ieeleealre svqitaerem vlaqeesari naekqveelm mamekvkqel
      901 esmkaklsst qqslaeketh ltnlraerrk hleevlemkq eallaaisek daniallels
      961 sskkktqdev aalkrekdrl vqqlkqqtqn rmklmadnye ddhlkssshs nqtnhkpspd
     1021 qdeeegiwa
//
LOCUS       XP_053923597             985 aa            linear   VRT 09-MAR-2023
DEFINITION  ELKS/Rab6-interacting/CAST family member 1 isoform X7 [Cuculus
            canorus].
ACCESSION   XP_053923597
VERSION     XP_053923597.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067622.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..985
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..985
                     /product="ELKS/Rab6-interacting/CAST family member 1
                     isoform X7"
                     /calculated_mol_wt=113026
     Region          154..950
                     /region_name="Cast"
                     /note="RIM-binding protein of the cytomatrix active zone;
                     pfam10174"
                     /db_xref="CDD:431111"
     CDS             1..985
                     /gene="ERC1"
                     /coded_by="XM_054067622.1:325..3282"
                     /db_xref="GeneID:104055906"
ORIGIN      
        1 mygsarsvgk vepsnqspgr sprlprsprl ghrrtnstgg ssgsstgggs gktlsmeniq
       61 slnaayatsg pmylsdhenv gadtpkstmt lgrsggrlpy gvrmtamgss pniassgvas
      121 dtiafgehhl ppvsmastvp hslrqardnt imdlqtqlke vlrendllrk dvevkeskls
      181 ssmnsiktfw spelkkeral rkdeaskiti wkeqyrvlqe enqhmqmtiq alqdelriqr
      241 dlnqlfqqds strtsepfva elteenfqrl haeherqake lfllrktlee melrietqkq
      301 tlnardesik kllemlqskg lsakateedh ertrrlaeae mhvhhlesll eqkekennml
      361 reeihrrfen apdtaktkal qtviemkdsk issmerglrd leeeiqmlks ngalsteere
      421 eemkqmevyr shskfmknkv eqlkeelsak eaqgedlkkr vaglqteigq vkqelsrkdt
      481 ellalqtkle tltnqfsdsk qhievlkesl takeqraail qtevdalrlr leeketmlnk
      541 ktkqiqemae ekgtqageih dlkdmlevke rkvnvlqkki enlqeqlrdk ekqmsslker
      601 vkslqadttn tdtalttlee alaekertie rlkeqrdrde rekqeeidny kkdikdlkek
      661 vsvlqgdlte kesslldlke hasslassgl kkdsrlktle ialeqkkeec lkmetqlkkh
      721 pevllshpsk paheatlear aspelsdrmq qlerevtryr eesskaqaev drlleilkem
      781 enekndkdkk iaelerqvkd qnkkvanlkh keqvekkksa qmleearrre dnlndssqql
      841 qveelmmame kvkqelesmk aklsstqqsl aekethltnl raerrkhlee vlemkqeall
      901 aaisekdani allelssskk ktqdevaalk rekdrlvqql kqqtqnrmkl madnyeddhl
      961 kssshsnqtn hkpspdqdee egiwa
//
LOCUS       XP_053923604             959 aa            linear   VRT 09-MAR-2023
DEFINITION  ELKS/Rab6-interacting/CAST family member 1 isoform X8 [Cuculus
            canorus].
ACCESSION   XP_053923604
VERSION     XP_053923604.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067629.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..959
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..959
                     /product="ELKS/Rab6-interacting/CAST family member 1
                     isoform X8"
                     /calculated_mol_wt=110187
     Region          154..944
                     /region_name="Cast"
                     /note="RIM-binding protein of the cytomatrix active zone;
                     pfam10174"
                     /db_xref="CDD:431111"
     Region          823..>885
                     /region_name="PRK11091"
                     /note="aerobic respiration control sensor protein ArcB;
                     Provisional"
                     /db_xref="CDD:236842"
     CDS             1..959
                     /gene="ERC1"
                     /coded_by="XM_054067629.1:325..3204"
                     /db_xref="GeneID:104055906"
ORIGIN      
        1 mygsarsvgk vepsnqspgr sprlprsprl ghrrtnstgg ssgsstgggs gktlsmeniq
       61 slnaayatsg pmylsdhenv gadtpkstmt lgrsggrlpy gvrmtamgss pniassgvas
      121 dtiafgehhl ppvsmastvp hslrqardnt imdlqtqlke vlrendllrk dvevkeskls
      181 ssmnsiktfw spelkkeral rkdeaskiti wkeqyrvlqe enqhmqmtiq alqdelriqr
      241 dlnqlfqqds strtsepfva elteenfqrl haeherqake lfllrktlee melrietqkq
      301 tlnardesik kllemlqskg lsakateedh ertrrlaeae mhvhhlesll eqkekennml
      361 reeihrrfen apdtaktkal qtviemkdsk issmerglrd leeeiqmlks ngalsteere
      421 eemkqmevyr shskfmknkv eqlkeelsak eaqgedlkkr vaglqteigq vkqelsrkdt
      481 ellalqtkle tltnqfsdsk qhievlkesl takeqraail qtevdalrlr leeketmlnk
      541 ktkqiqemae ekgtqageih dlkdmlevke rkvnvlqkki enlqeqlrdk ekqmsslker
      601 vkslqadttn tdtalttlee alaekertie rlkeqrdrde rekqeeidny kkdikdlkek
      661 vsvlqgdlte kesslldlke hasslassgl kkdsrlktle ialeqkkeec lkmetqlkkh
      721 pevllshpsk paheatlear aspelsdrmq qlerevtryr eesskaqaev drlleilkem
      781 enekndkdkk iaelerqvkd qnkkvanlkh keqvekkksa qmleearrre dnlndssqql
      841 qdnlrkkddr ieeleealre svqitaerem vlaqeesari naekqveelm mamekvkqel
      901 esmkaklsst qqslaeketh ltnlraerrk hleevlemki ekqllqngkr sgldlenla
//
LOCUS       XP_053923614             989 aa            linear   VRT 09-MAR-2023
DEFINITION  ELKS/Rab6-interacting/CAST family member 1 isoform X9 [Cuculus
            canorus].
ACCESSION   XP_053923614
VERSION     XP_053923614.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067639.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..989
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..989
                     /product="ELKS/Rab6-interacting/CAST family member 1
                     isoform X9"
                     /calculated_mol_wt=113761
     Region          154..954
                     /region_name="Cast"
                     /note="RIM-binding protein of the cytomatrix active zone;
                     pfam10174"
                     /db_xref="CDD:431111"
     Region          783..>845
                     /region_name="PRK11091"
                     /note="aerobic respiration control sensor protein ArcB;
                     Provisional"
                     /db_xref="CDD:236842"
     CDS             1..989
                     /gene="ERC1"
                     /coded_by="XM_054067639.1:325..3294"
                     /db_xref="GeneID:104055906"
ORIGIN      
        1 mygsarsvgk vepsnqspgr sprlprsprl ghrrtnstgg ssgsstgggs gktlsmeniq
       61 slnaayatsg pmylsdhenv gadtpkstmt lgrsggrlpy gvrmtamgss pniassgvas
      121 dtiafgehhl ppvsmastvp hslrqardnt imdlqtqlke vlrendllrk dvevkeskls
      181 ssmnsiktfw spelkkeral rkdeaskiti wkeqyrvlqe enqhmqmtiq alqdelriqr
      241 dlnqlfqqds strtsepfva elteenfqrl haeherqake lfllrktlee melrietqkq
      301 tlnardesik kllemlqskg lsakateedh ertrrlaeae mhvhhlesll eqkekennml
      361 reeihrrfen apdtaktkal qtviemkdsk issmerglrd leeeiqmlks ngalsteere
      421 eemkqmevyr shskfmknki gqvkqelsrk dtellalqtk letltnqfsd skqhievlke
      481 sltakeqraa ilqtevdalr lrleeketml nkktkqiqem aeekgtqage ihdlkdmlev
      541 kerkvnvlqk kienlqeqlr dkekqmsslk ervkslqadt tntdtalttl eealaekert
      601 ierlkeqrdr derekqeeid nykkdikdlk ekvsvlqgdl tekesslldl kehasslass
      661 glkkdsrlkt leialeqkke eclkmetqlk kaheatlear aspelsdrmq qlerevtryr
      721 eesskaqaev drlleilkem enekndkdkk iaelerqvkd qnkkvanlkh keqvekkksa
      781 qmleearrre dnlndssqql qdnlrkkddr ieeleealre svqitaerem vlaqeesari
      841 naekqveelm mamekvkqel esmkaklsst qqslaeketh ltnlraerrk hleevlemkq
      901 eallaaisek daniallels sskkktqdev aalkrekdrl vqqlkqqtqn rmklmadnye
      961 ddhlkssshs nqtnhkpspd qdeeegiwa
//
LOCUS       XP_053923621             973 aa            linear   VRT 09-MAR-2023
DEFINITION  ELKS/Rab6-interacting/CAST family member 1 isoform X10 [Cuculus
            canorus].
ACCESSION   XP_053923621
VERSION     XP_053923621.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067646.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..973
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..973
                     /product="ELKS/Rab6-interacting/CAST family member 1
                     isoform X10"
                     /calculated_mol_wt=111704
     Region          154..938
                     /region_name="Cast"
                     /note="RIM-binding protein of the cytomatrix active zone;
                     pfam10174"
                     /db_xref="CDD:431111"
     CDS             1..973
                     /gene="ERC1"
                     /coded_by="XM_054067646.1:325..3246"
                     /db_xref="GeneID:104055906"
ORIGIN      
        1 mygsarsvgk vepsnqspgr sprlprsprl ghrrtnstgg ssgsstgggs gktlsmeniq
       61 slnaayatsg pmylsdhenv gadtpkstmt lgrsggrlpy gvrmtamgss pniassgvas
      121 dtiafgehhl ppvsmastvp hslrqardnt imdlqtqlke vlrendllrk dvevkeskls
      181 ssmnsiktfw spelkkeral rkdeaskiti wkeqyrvlqe enqhmqmtiq alqdelriqr
      241 dlnqlfqqds strtsepfva elteenfqrl haeherqake lfllrktlee melrietqkq
      301 tlnardesik kllemlqskg lsakateedh ertrrlaeae mhvhhlesll eqkekennml
      361 reeihrrfen apdtaktkal qtviemkdsk issmerglrd leeeiqmlks ngalsteere
      421 eemkqmevyr shskfmknkv eqlkeelsak eaqgedlkkr vaglqteigq vkqelsrkdt
      481 ellalqtkle tltnqfsdsk qhievlkesl takeqraail qtevdalrlr leeketmlnk
      541 ktkqiqemae ekgtqageih dlkdmlevke rkvnvlqkki enlqeqlrdk ekqmsslker
      601 vkslqadttn tdtalttlee alaekertie rlkeqrdrde rekqeeidny kkdikdlkek
      661 vsvlqgdlte kesslldlke hasslassgl kkdsrlktle ialeqkkeec lkmetqlkka
      721 heatlearas pelsdrmqql erevtryree sskaqaevdr lleilkemen ekndkdkkia
      781 elerqvkdqn kkvanlkhke qvekkksaqm leearrredn lndssqqlqv eelmmamekv
      841 kqelesmkak lsstqqslae kethltnlra errkhleevl emkqeallaa isekdanial
      901 lelssskkkt qdevaalkre kdrlvqqlkq qtqnrmklma dnyeddhlks sshsnqtnhk
      961 pspdqdeeeg iwa
//
LOCUS       XP_053923631             945 aa            linear   VRT 09-MAR-2023
DEFINITION  ELKS/Rab6-interacting/CAST family member 1 isoform X11 [Cuculus
            canorus].
ACCESSION   XP_053923631
VERSION     XP_053923631.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067656.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..945
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..945
                     /product="ELKS/Rab6-interacting/CAST family member 1
                     isoform X11"
                     /calculated_mol_wt=108594
     Region          154..910
                     /region_name="Cast"
                     /note="RIM-binding protein of the cytomatrix active zone;
                     pfam10174"
                     /db_xref="CDD:431111"
     CDS             1..945
                     /gene="ERC1"
                     /coded_by="XM_054067656.1:325..3162"
                     /db_xref="GeneID:104055906"
ORIGIN      
        1 mygsarsvgk vepsnqspgr sprlprsprl ghrrtnstgg ssgsstgggs gktlsmeniq
       61 slnaayatsg pmylsdhenv gadtpkstmt lgrsggrlpy gvrmtamgss pniassgvas
      121 dtiafgehhl ppvsmastvp hslrqardnt imdlqtqlke vlrendllrk dvevkeskls
      181 ssmnsiktfw spelkkeral rkdeaskiti wkeqyrvlqe enqhmqmtiq alqdelriqr
      241 dlnqlfqqds strtsepfva elteenfqrl haeherqake lfllrktlee melrietqkq
      301 tlnardesik kllemlqskg lsakateedh ertrrlaeae mhvhhlesll eqkekennml
      361 reeihrrfen apdtaktkal qtviemkdsk issmerglrd leeeiqmlks ngalsteere
      421 eemkqmevyr shskfmknki gqvkqelsrk dtellalqtk letltnqfsd skqhievlke
      481 sltakeqraa ilqtevdalr lrleeketml nkktkqiqem aeekgtqage ihdlkdmlev
      541 kerkvnvlqk kienlqeqlr dkekqmsslk ervkslqadt tntdtalttl eealaekert
      601 ierlkeqrdr derekqeeid nykkdikdlk ekvsvlqgdl tekesslldl kehasslass
      661 glkkdsrlkt leialeqkke eclkmetqlk kaheatlear aspelsdrmq qlerevtryr
      721 eesskaqaev drlleilkem enekndkdkk iaelerqvkd qnkkvanlkh keqvekkksa
      781 qmleearrre dnlndssqql qveelmmame kvkqelesmk aklsstqqsl aekethltnl
      841 raerrkhlee vlemkqeall aaisekdani allelssskk ktqdevaalk rekdrlvqql
      901 kqqtqnrmkl madnyeddhl kssshsnqtn hkpspdqdee egiwa
//
LOCUS       XP_053923645             835 aa            linear   VRT 09-MAR-2023
DEFINITION  semaphorin-3D isoform X1 [Cuculus canorus].
ACCESSION   XP_053923645
VERSION     XP_053923645.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067670.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..835
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..835
                     /product="semaphorin-3D isoform X1"
                     /calculated_mol_wt=95347
     Region          123..596
                     /region_name="Sema_3D"
                     /note="The Sema domain, a protein interacting module, of
                     semaphorin 3D (Sema3D); cd11252"
                     /db_xref="CDD:200513"
     Site            order(180..183,242..243,247,268,270..271,278,291,294..295,
                     297,302,331,355..359,361,477,481,484)
                     /site_type="other"
                     /note="putative plexin binding site [polypeptide binding]"
                     /db_xref="CDD:200513"
     Site            order(332..333,335,338..340,374,377..378,380,382,386,
                     409..416,442..445,490,505)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:200513"
     Region          595..632
                     /region_name="PSI"
                     /note="domain found in Plexins, Semaphorins and Integrins;
                     smart00423"
                     /db_xref="CDD:214655"
     Region          657..748
                     /region_name="Ig_Sema3"
                     /note="Immunoglobulin (Ig)-like domain of class III
                     semaphorin Sema3; cd05871"
                     /db_xref="CDD:409455"
     Region          657..663
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409455"
     Region          668..676
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409455"
     Site            order(670,715)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:409455"
     Region          682..688
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409455"
     Region          690..693
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409455"
     Region          703..707
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409455"
     Region          710..717
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409455"
     Region          723..732
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409455"
     Region          735..748
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409455"
     CDS             1..835
                     /gene="SEMA3D"
                     /coded_by="XM_054067670.1:16..2523"
                     /db_xref="GeneID:104066040"
ORIGIN      
        1 mcksapvvva epalpsaart lrgctwrrpr atcpavtrav repralpqrl nldclksgdi
       61 fhhspkedte eksrmrssql phacsllsla mlflpvtgms kqniprlkls ykdlllsnsc
      121 ipflgstegl dfrtllldee rgrlligakd hifllnlvdl nknvkkiywp askekvelck
      181 lagkdahtec anfirvlqpy nrthvyvcgt gafhplcgyi elgthkeetv frldtqnles
      241 grlkcpfdpq qpfasvmade ylyagtasdf lgkdtalars lgpshdhhyi rtdisehywl
      301 tgakfvgtfp ipdtynpddd kiyfffreis qdsgtsdkti lsrvgrvckn dmggqrslin
      361 kwttflkarl vcsipgpega dthfdelqdi fllstrdern plvygvfttt ssvfkgsavc
      421 vysmadirav fngpyahkes vdhrwvqyeg ripyprpgtc psktydplik strdfpdevi
      481 sfikrhplmy ksvypltggp vftrinvdyr ltqivvdhvm aedgqydvif lgtdigtvlk
      541 vvsitkekwt keevvleelq ifkhpsfist meisqkqqql yigsrdglvq lslhrchtyg
      601 kacadcclar dpycawdgns csryaptskr rarrqdvkyg dpvaqcwdve dsishetade
      661 kvifgiefns tflecipksq qasirwyiqr sgeehreelk aderiikteh gllirslqkr
      721 dggayfckaq ehtfvhtivk lnlnviengq mestqktede egrvrdllte srlrykdyiq
      781 lvsspsfsld eyceqmwhre krrqrnkgga kwkhvqemkk krnrrhhepa rppst
//
LOCUS       XP_053923652             790 aa            linear   VRT 09-MAR-2023
DEFINITION  semaphorin-3D isoform X2 [Cuculus canorus].
ACCESSION   XP_053923652
VERSION     XP_053923652.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067677.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..790
                     /product="semaphorin-3D isoform X2"
                     /calculated_mol_wt=90426
     Region          78..551
                     /region_name="Sema_3D"
                     /note="The Sema domain, a protein interacting module, of
                     semaphorin 3D (Sema3D); cd11252"
                     /db_xref="CDD:200513"
     Site            order(135..138,197..198,202,223,225..226,233,246,249..250,
                     252,257,286,310..314,316,432,436,439)
                     /site_type="other"
                     /note="putative plexin binding site [polypeptide binding]"
                     /db_xref="CDD:200513"
     Site            order(287..288,290,293..295,329,332..333,335,337,341,
                     364..371,397..400,445,460)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:200513"
     Region          550..587
                     /region_name="PSI"
                     /note="domain found in Plexins, Semaphorins and Integrins;
                     smart00423"
                     /db_xref="CDD:214655"
     Region          612..703
                     /region_name="Ig_Sema3"
                     /note="Immunoglobulin (Ig)-like domain of class III
                     semaphorin Sema3; cd05871"
                     /db_xref="CDD:409455"
     Region          612..618
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409455"
     Region          623..631
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409455"
     Site            order(625,670)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:409455"
     Region          637..643
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409455"
     Region          645..648
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409455"
     Region          658..662
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409455"
     Region          665..672
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409455"
     Region          678..687
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409455"
     Region          690..703
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409455"
     CDS             1..790
                     /gene="SEMA3D"
                     /coded_by="XM_054067677.1:120..2492"
                     /db_xref="GeneID:104066040"
ORIGIN      
        1 maitlnldcl ksgdifhhsp kedteeksrm rssqlphacs llslamlflp vtgmskqnip
       61 rlklsykdll lsnscipflg stegldfrtl lldeergrll igakdhifll nlvdlnknvk
      121 kiywpaskek velcklagkd ahtecanfir vlqpynrthv yvcgtgafhp lcgyielgth
      181 keetvfrldt qnlesgrlkc pfdpqqpfas vmadeylyag tasdflgkdt alarslgpsh
      241 dhhyirtdis ehywltgakf vgtfpipdty npdddkiyff freisqdsgt sdktilsrvg
      301 rvckndmggq rslinkwttf lkarlvcsip gpegadthfd elqdifllst rdernplvyg
      361 vftttssvfk gsavcvysma diravfngpy ahkesvdhrw vqyegripyp rpgtcpskty
      421 dplikstrdf pdevisfikr hplmyksvyp ltggpvftri nvdyrltqiv vdhvmaedgq
      481 ydviflgtdi gtvlkvvsit kekwtkeevv leelqifkhp sfistmeisq kqqqlyigsr
      541 dglvqlslhr chtygkacad cclardpyca wdgnscsrya ptskrrarrq dvkygdpvaq
      601 cwdvedsish etadekvifg iefnstflec ipksqqasir wyiqrsgeeh reelkaderi
      661 iktehgllir slqkrdggay fckaqehtfv htivklnlnv iengqmestq ktedeegrvr
      721 dlltesrlry kdyiqlvssp sfsldeyceq mwhrekrrqr nkggakwkhv qemkkkrnrr
      781 hheparppst
//
LOCUS       XP_053923659             761 aa            linear   VRT 09-MAR-2023
DEFINITION  semaphorin-3D isoform X3 [Cuculus canorus].
ACCESSION   XP_053923659
VERSION     XP_053923659.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067684.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..761
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..761
                     /product="semaphorin-3D isoform X3"
                     /calculated_mol_wt=87129
     Region          49..522
                     /region_name="Sema_3D"
                     /note="The Sema domain, a protein interacting module, of
                     semaphorin 3D (Sema3D); cd11252"
                     /db_xref="CDD:200513"
     Site            order(106..109,168..169,173,194,196..197,204,217,220..221,
                     223,228,257,281..285,287,403,407,410)
                     /site_type="other"
                     /note="putative plexin binding site [polypeptide binding]"
                     /db_xref="CDD:200513"
     Site            order(258..259,261,264..266,300,303..304,306,308,312,
                     335..342,368..371,416,431)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:200513"
     Region          521..558
                     /region_name="PSI"
                     /note="domain found in Plexins, Semaphorins and Integrins;
                     smart00423"
                     /db_xref="CDD:214655"
     Region          583..674
                     /region_name="Ig_Sema3"
                     /note="Immunoglobulin (Ig)-like domain of class III
                     semaphorin Sema3; cd05871"
                     /db_xref="CDD:409455"
     Region          583..589
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409455"
     Region          594..602
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409455"
     Site            order(596,641)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:409455"
     Region          608..614
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409455"
     Region          616..619
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409455"
     Region          629..633
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409455"
     Region          636..643
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409455"
     Region          649..658
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409455"
     Region          661..674
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409455"
     CDS             1..761
                     /gene="SEMA3D"
                     /coded_by="XM_054067684.1:321..2606"
                     /db_xref="GeneID:104066040"
ORIGIN      
        1 mrssqlphac sllslamlfl pvtgmskqni prlklsykdl llsnscipfl gstegldfrt
       61 llldeergrl ligakdhifl lnlvdlnknv kkiywpaske kvelcklagk dahtecanfi
      121 rvlqpynrth vyvcgtgafh plcgyielgt hkeetvfrld tqnlesgrlk cpfdpqqpfa
      181 svmadeylya gtasdflgkd talarslgps hdhhyirtdi sehywltgak fvgtfpipdt
      241 ynpdddkiyf ffreisqdsg tsdktilsrv grvckndmgg qrslinkwtt flkarlvcsi
      301 pgpegadthf delqdiflls trdernplvy gvftttssvf kgsavcvysm adiravfngp
      361 yahkesvdhr wvqyegripy prpgtcpskt ydplikstrd fpdevisfik rhplmyksvy
      421 pltggpvftr invdyrltqi vvdhvmaedg qydviflgtd igtvlkvvsi tkekwtkeev
      481 vleelqifkh psfistmeis qkqqqlyigs rdglvqlslh rchtygkaca dcclardpyc
      541 awdgnscsry aptskrrarr qdvkygdpva qcwdvedsis hetadekvif giefnstfle
      601 cipksqqasi rwyiqrsgee hreelkader iiktehglli rslqkrdgga yfckaqehtf
      661 vhtivklnln viengqmest qktedeegrv rdlltesrlr ykdyiqlvss psfsldeyce
      721 qmwhrekrrq rnkggakwkh vqemkkkrnr rhheparpps t
//
LOCUS       XP_053923668             761 aa            linear   VRT 09-MAR-2023
DEFINITION  semaphorin-3D isoform X3 [Cuculus canorus].
ACCESSION   XP_053923668
VERSION     XP_053923668.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067693.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..761
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..761
                     /product="semaphorin-3D isoform X3"
                     /calculated_mol_wt=87129
     Region          49..522
                     /region_name="Sema_3D"
                     /note="The Sema domain, a protein interacting module, of
                     semaphorin 3D (Sema3D); cd11252"
                     /db_xref="CDD:200513"
     Site            order(106..109,168..169,173,194,196..197,204,217,220..221,
                     223,228,257,281..285,287,403,407,410)
                     /site_type="other"
                     /note="putative plexin binding site [polypeptide binding]"
                     /db_xref="CDD:200513"
     Site            order(258..259,261,264..266,300,303..304,306,308,312,
                     335..342,368..371,416,431)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:200513"
     Region          521..558
                     /region_name="PSI"
                     /note="domain found in Plexins, Semaphorins and Integrins;
                     smart00423"
                     /db_xref="CDD:214655"
     Region          583..674
                     /region_name="Ig_Sema3"
                     /note="Immunoglobulin (Ig)-like domain of class III
                     semaphorin Sema3; cd05871"
                     /db_xref="CDD:409455"
     Region          583..589
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409455"
     Region          594..602
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409455"
     Site            order(596,641)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:409455"
     Region          608..614
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409455"
     Region          616..619
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409455"
     Region          629..633
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409455"
     Region          636..643
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409455"
     Region          649..658
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409455"
     Region          661..674
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409455"
     CDS             1..761
                     /gene="SEMA3D"
                     /coded_by="XM_054067693.1:194..2479"
                     /db_xref="GeneID:104066040"
ORIGIN      
        1 mrssqlphac sllslamlfl pvtgmskqni prlklsykdl llsnscipfl gstegldfrt
       61 llldeergrl ligakdhifl lnlvdlnknv kkiywpaske kvelcklagk dahtecanfi
      121 rvlqpynrth vyvcgtgafh plcgyielgt hkeetvfrld tqnlesgrlk cpfdpqqpfa
      181 svmadeylya gtasdflgkd talarslgps hdhhyirtdi sehywltgak fvgtfpipdt
      241 ynpdddkiyf ffreisqdsg tsdktilsrv grvckndmgg qrslinkwtt flkarlvcsi
      301 pgpegadthf delqdiflls trdernplvy gvftttssvf kgsavcvysm adiravfngp
      361 yahkesvdhr wvqyegripy prpgtcpskt ydplikstrd fpdevisfik rhplmyksvy
      421 pltggpvftr invdyrltqi vvdhvmaedg qydviflgtd igtvlkvvsi tkekwtkeev
      481 vleelqifkh psfistmeis qkqqqlyigs rdglvqlslh rchtygkaca dcclardpyc
      541 awdgnscsry aptskrrarr qdvkygdpva qcwdvedsis hetadekvif giefnstfle
      601 cipksqqasi rwyiqrsgee hreelkader iiktehglli rslqkrdgga yfckaqehtf
      661 vhtivklnln viengqmest qktedeegrv rdlltesrlr ykdyiqlvss psfsldeyce
      721 qmwhrekrrq rnkggakwkh vqemkkkrnr rhheparpps t
//
LOCUS       XP_053923686            1125 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase LATS2 [Cuculus canorus].
ACCESSION   XP_053923686
VERSION     XP_053923686.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067711.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1125
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1125
                     /product="serine/threonine-protein kinase LATS2"
                     /calculated_mol_wt=126296
     Region          100..140
                     /region_name="UBA_LATS2"
                     /note="UBA domain found in vertebrate
                     serine/threonine-protein kinase LATS2; cd14398"
                     /db_xref="CDD:270581"
     Region          622..704
                     /region_name="MobB_LATS2"
                     /note="Mob-binding domain found in large tumor suppressor
                     homolog 2 (LATS2); cd21777"
                     /db_xref="CDD:439272"
     Site            order(639..640,642..644,646,651,654,657,661,686,690..691,
                     693..695,697)
                     /site_type="other"
                     /note="putative Mob binding site [polypeptide binding]"
                     /db_xref="CDD:439272"
     Region          703..1083
                     /region_name="STKc_LATS2"
                     /note="Catalytic domain of the Protein Serine/Threonine
                     Kinase, Large Tumor Suppressor 2; cd05626"
                     /db_xref="CDD:173715"
     Site            order(711..715,719,732,734,766,782..783,785,789,791,828,
                     830,832..833,835,845..846,849,910..915,942,948,951)
                     /site_type="active"
                     /db_xref="CDD:173715"
     Site            order(711..715,719,732,734,766,783..785,789,828,830,
                     832..833,835,845..846)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:173715"
     Site            order(715,789,791,828,830,832,849,910..915,942,948,951)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:173715"
     Site            order(845..857,905..915)
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:173715"
     Site            1074..1079
                     /site_type="other"
                     /note="hydrophobic motif (HM)"
                     /db_xref="CDD:173715"
     CDS             1..1125
                     /gene="LATS2"
                     /coded_by="XM_054067711.1:446..3823"
                     /db_xref="GeneID:104055317"
ORIGIN      
        1 mrpktfpatt ysgnsrqrlq eireglkqps kssgqglpig pgsetsldpk ilmgkdaarq
       61 qqmrqtpkfg pyqkalreir ysllpfanes staaaievnr qmlqelvnag cdqemavral
      121 kqtgsrsiea aleyiskmsy ldprneqivr vikqtspgkg ivpnnvtrrp sfegsnesfp
      181 syhqignaay egtgfgaesa nmltevprpy mdylistsqs tamnapvqrp sgvgthstpt
      241 shqqktypan idssvinypv anhssqalql qashgsnsqh ysrqhmmmqg epmgygvqrs
      301 psfqnkmqqe ggytslpnkg avvqnnsgha fqqapaslyi shshhkqtsp sshqmhvisr
      361 gpafandfsd sppqnlltps rnslnmdiyd mnnpqvqqwq aatssrrdsl qnpgietspr
      421 qhvsfrpdat vpsrtnsfnn hqqqpqvtvs mrqvppgkpd psitspntit avtsahilqp
      481 vksmrvmrpe pqtavgpshp gwlpaqapav dglemieqhv spvgaanayq ldvdygnqel
      541 rcppppypkh lllpgsseqf dinclcmgve qtlrvvpnst gnkaeenser ndksskntka
      601 ekpskdkkqi qtspvpvrkn gkdeekresr iksyspfafk fymeqhvenv iktyqqkinr
      661 rlqleqemak aglceaeqeq mrkilyqkes nynrlkrakm dksmfvkikt lgigafgevc
      721 lackvdthal yamktlrkkd vlnrnqvahv kaerdilaea dnewvvklyy sfqdkdnlyf
      781 vmdyipggdm msllirmevf perlarfyia eltlaiesvh kmgfihrdik pdnilidldg
      841 hikltdfglc tgfrwthnsk yyqkgshirq dsmepsdlwd dvsncrcgdr lktleqrakk
      901 qhqrclahsl vgtpnyiape vllrkgytql cdwwsvgvil femlvgqppf laptptetql
      961 kvinwestlh ipsqiklspe atdlitklcc aaedrlgrng addikahsff hsmdfstdir
     1021 rqpapyvpki shpmdtsnfd pveeespwnd asgdstrtwd plassnskht ehafyeftfr
     1081 rffddngypf rypkpsgmev gqseksdved kggvdqtgac qpvyv
//
LOCUS       XP_053923694             264 aa            linear   VRT 09-MAR-2023
DEFINITION  NEDD4 family-interacting protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053923694
VERSION     XP_053923694.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067719.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..264
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..264
                     /product="NEDD4 family-interacting protein 2 isoform X1"
                     /calculated_mol_wt=29659
     Region          17..264
                     /region_name="NDFIP2"
                     /note="NEDD4 family-interacting protein 2; cd22306"
                     /db_xref="CDD:412070"
     CDS             1..264
                     /gene="NDFIP2"
                     /coded_by="XM_054067719.1:78..872"
                     /db_xref="GeneID:104068401"
ORIGIN      
        1 mlaehsfksl qtrssprgqv twlhneddpp essaaeqpsa stettqtpqt aavseadtsp
       61 ppyssiavea aatsethnef ypvpppysva tslptydeae kakaaamaaa aaevaqrhaq
      121 fresrslfde iflsrpeeee ypprddfsda dqlrvgndgi fmlaffmafi fnwigfclsf
      181 citntiagry gaicgfglsl ikwilivrfs dyftgyfngq ywlwwiflvl glllffrgfv
      241 nylkvrnmse smaaahrtrf ffly
//
LOCUS       XP_053923705             244 aa            linear   VRT 09-MAR-2023
DEFINITION  NEDD4 family-interacting protein 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053923705
VERSION     XP_053923705.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067730.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..244
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..244
                     /product="NEDD4 family-interacting protein 2 isoform X2"
                     /calculated_mol_wt=27212
     Region          17..244
                     /region_name="NDFIP2"
                     /note="NEDD4 family-interacting protein 2; cd22306"
                     /db_xref="CDD:412070"
     CDS             1..244
                     /gene="NDFIP2"
                     /coded_by="XM_054067730.1:69..803"
                     /db_xref="GeneID:104068401"
ORIGIN      
        1 mlaehsfksl qtrssprgqv twlhneddpp essaaeqpsa stettqtpqt aavseadtsp
       61 ppyssiavea aatsethnef ypvpppysva tslptydeae kakaaamaaa aaevaqreee
      121 ypprddfsda dqlrvgndgi fmlaffmafi fnwigfclsf citntiagry gaicgfglsl
      181 ikwilivrfs dyftgyfngq ywlwwiflvl glllffrgfv nylkvrnmse smaaahrtrf
      241 ffly
//
LOCUS       XP_053923715             271 aa            linear   VRT 09-MAR-2023
DEFINITION  NEDD4 family-interacting protein 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053923715
VERSION     XP_053923715.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067740.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..271
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..271
                     /product="NEDD4 family-interacting protein 2 isoform X3"
                     /calculated_mol_wt=30354
     Region          24..271
                     /region_name="NDFIP2"
                     /note="NEDD4 family-interacting protein 2; cd22306"
                     /db_xref="CDD:412070"
     CDS             1..271
                     /gene="NDFIP2"
                     /coded_by="XM_054067740.1:33..848"
                     /db_xref="GeneID:104068401"
ORIGIN      
        1 mtqrcalaae kandilgcpr qriasklrql hneddppess aaeqpsaste ttqtpqtaav
       61 seadtspppy ssiaveaaat sethnefypv pppysvatsl ptydeaekak aaamaaaaae
      121 vaqrhaqfre srslfdeifl srpeeeeypp rddfsdadql rvgndgifml affmafifnw
      181 igfclsfcit ntiagrygai cgfglslikw ilivrfsdyf tgyfngqywl wwiflvlgll
      241 lffrgfvnyl kvrnmsesma aahrtrfffl y
//
LOCUS       XP_053923726             259 aa            linear   VRT 09-MAR-2023
DEFINITION  NEDD4 family-interacting protein 2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053923726
VERSION     XP_053923726.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067751.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..259
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..259
                     /product="NEDD4 family-interacting protein 2 isoform X4"
                     /calculated_mol_wt=29092
     Region          16..259
                     /region_name="NDFIP2"
                     /note="NEDD4 family-interacting protein 2; cd22306"
                     /db_xref="CDD:412070"
     CDS             1..259
                     /gene="NDFIP2"
                     /coded_by="XM_054067751.1:128..907"
                     /db_xref="GeneID:104068401"
ORIGIN      
        1 mlrticglgi fqeelqelhn eddppessaa eqpsastett qtpqtaavse adtspppyss
       61 iaveaaatse thnefypvpp pysvatslpt ydeaekakaa amaaaaaeva qrhaqfresr
      121 slfdeiflsr peeeeypprd dfsdadqlrv gndgifmlaf fmafifnwig fclsfcitnt
      181 iagrygaicg fglslikwil ivrfsdyftg yfngqywlww iflvlglllf frgfvnylkv
      241 rnmsesmaaa hrtrfffly
//
LOCUS       XP_053923735             254 aa            linear   VRT 09-MAR-2023
DEFINITION  NEDD4 family-interacting protein 2 isoform X5 [Cuculus canorus].
ACCESSION   XP_053923735
VERSION     XP_053923735.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067760.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..254
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..254
                     /product="NEDD4 family-interacting protein 2 isoform X5"
                     /calculated_mol_wt=28584
     Region          7..254
                     /region_name="NDFIP2"
                     /note="NEDD4 family-interacting protein 2; cd22306"
                     /db_xref="CDD:412070"
     CDS             1..254
                     /gene="NDFIP2"
                     /coded_by="XM_054067760.1:150..914"
                     /db_xref="GeneID:104068401"
ORIGIN      
        1 mdlhqpasry rvlhneddpp essaaeqpsa stettqtpqt aavseadtsp ppyssiavea
       61 aatsethnef ypvpppysva tslptydeae kakaaamaaa aaevaqrhaq fresrslfde
      121 iflsrpeeee ypprddfsda dqlrvgndgi fmlaffmafi fnwigfclsf citntiagry
      181 gaicgfglsl ikwilivrfs dyftgyfngq ywlwwiflvl glllffrgfv nylkvrnmse
      241 smaaahrtrf ffly
//
LOCUS       XP_053923746             945 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent calcium channel subunit alpha-2/delta-4 isoform
            X1 [Cuculus canorus].
ACCESSION   XP_053923746
VERSION     XP_053923746.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067771.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..945
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..945
                     /product="voltage-dependent calcium channel subunit
                     alpha-2/delta-4 isoform X1"
                     /calculated_mol_wt=106806
     Region          108..224
                     /region_name="VWA_N"
                     /note="VWA N-terminal; pfam08399"
                     /db_xref="CDD:462464"
     Region          237..420
                     /region_name="vWA_VGCC_like"
                     /note="VWA Voltage gated Calcium channel like:
                     Voltage-gated calcium channels are a complex of five
                     proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The
                     alpha 2 and delta subunits result from proteolytic
                     processing of a single gene product and carries at...;
                     cd01463"
                     /db_xref="CDD:238740"
     Site            order(257,259,261,331,365)
                     /site_type="other"
                     /note="metal ion-dependent adhesion site (MIDAS)"
                     /db_xref="CDD:238740"
     Region          505..620
                     /region_name="HK_sensor"
                     /note="Sensor domains of Histidine Kinase receptors;
                     cl38916"
                     /db_xref="CDD:365792"
     Region          <809..>945
                     /region_name="VGCC_alpha2"
                     /note="Neuronal voltage-dependent calcium channel alpha
                     2acd; pfam08473"
                     /db_xref="CDD:462488"
     CDS             1..945
                     /gene="CACNA2D4"
                     /coded_by="XM_054067771.1:318..3155"
                     /db_xref="GeneID:104055920"
ORIGIN      
        1 mvgswrmgpw aipwmmlwlf cllpstraqt kipletvksw adafggdlys ivtkysgsll
       61 lqkkykdvep tlkikevdgl elvkkfseqm esmlrrkvea verlveaaee adlnheynss
      121 lqfdyynsvl inekdendny velgdefile pnehfnnllv nttysdiqlp tnvynkdpai
      181 lngvymseal npifvdnfer dptltwqyfg sstgffrlyp gikwlpdeng visfdcrnrg
      241 wyiqaatspk diviivdvsg smkglrmtia khtivtildt lgendfvnii ayndyvhfie
      301 pcfkgilvqa drdnrehfkq lvdelqakgv gtvnkaltes fkilrefrda gqgglcnqai
      361 mlitdgaved yeavfekynw pdrkvrvfty ligrevtfap nvkwiacnnk gyytqistla
      421 dvqenvmeyl hvlsrpmvin hdhdiiwtea ymdsalpqse elfasqaqsl llmttvampv
      481 fskknetrsh gillgvvgsd vplrellkla pryklgvhgy aflntnngyi lshpdlrply
      541 kegkklkpkp nynsvdlsev ewedqdeilr tamingetgy lsmdvkvpvd kgkrvlfltn
      601 dyfftdisgt pfslgvvlsr ghgeyillgn tsveeglhdl lqpdlslade wiycitdidp
      661 dhrklsqlea virfltgeep dlecdeelvq evlfdavvta pmeaywttla lnmsmesevg
      721 vemaflgtra glmrsslyvg sekisnrkfl trkdkesift mdhfplwyrr aaehppgsfi
      781 ysivseddae ggglpqvvtv stavavsvdg kmgiaaavgv qikldllqrk fwmamqqpnd
      841 sdcsaldgac plscqddiln cflidnngfi lvskrpaetg kffgavdgsv mtqllnmgmf
      901 rrvtmydyqa mckvpyhhhs garpllspiy aflaavkwli sdflm
//
LOCUS       XP_053923755            1097 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent calcium channel subunit alpha-2/delta-4 isoform
            X2 [Cuculus canorus].
ACCESSION   XP_053923755
VERSION     XP_053923755.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067780.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1097
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1097
                     /product="voltage-dependent calcium channel subunit
                     alpha-2/delta-4 isoform X2"
                     /calculated_mol_wt=123912
     Region          108..224
                     /region_name="VWA_N"
                     /note="VWA N-terminal; pfam08399"
                     /db_xref="CDD:462464"
     Region          237..420
                     /region_name="vWA_VGCC_like"
                     /note="VWA Voltage gated Calcium channel like:
                     Voltage-gated calcium channels are a complex of five
                     proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The
                     alpha 2 and delta subunits result from proteolytic
                     processing of a single gene product and carries at...;
                     cd01463"
                     /db_xref="CDD:238740"
     Site            order(257,259,261,331,365)
                     /site_type="other"
                     /note="metal ion-dependent adhesion site (MIDAS)"
                     /db_xref="CDD:238740"
     Region          <444..497
                     /region_name="HK_sensor"
                     /note="Sensor domains of Histidine Kinase receptors;
                     cl38916"
                     /db_xref="CDD:365792"
     Region          499..614
                     /region_name="PDC2_MCP_like"
                     /note="second PDC (PhoQ/DcuS/CitA) domain of
                     methyl-accepting chemotaxis proteins and similar domains;
                     cd12912"
                     /db_xref="CDD:350337"
     Region          <803..1076
                     /region_name="VGCC_alpha2"
                     /note="Neuronal voltage-dependent calcium channel alpha
                     2acd; pfam08473"
                     /db_xref="CDD:462488"
     CDS             1..1097
                     /gene="CACNA2D4"
                     /coded_by="XM_054067780.1:318..3611"
                     /db_xref="GeneID:104055920"
ORIGIN      
        1 mvgswrmgpw aipwmmlwlf cllpstraqt kipletvksw adafggdlys ivtkysgsll
       61 lqkkykdvep tlkikevdgl elvkkfseqm esmlrrkvea verlveaaee adlnheynss
      121 lqfdyynsvl inekdendny velgdefile pnehfnnllv nttysdiqlp tnvynkdpai
      181 lngvymseal npifvdnfer dptltwqyfg sstgffrlyp gikwlpdeng visfdcrnrg
      241 wyiqaatspk diviivdvsg smkglrmtia khtivtildt lgendfvnii ayndyvhfie
      301 pcfkgilvqa drdnrehfkq lvdelqakgv gtvnkaltes fkilrefrda gqgglcnqai
      361 mlitdgaved yeavfekynw pdrkvrvfty ligrevtfap nvkwiacnnk gyytqistla
      421 dvqenvmeyl hvlsrpmvin hdhdiiwtea ymdsalfasq aqslllmttv ampvfskkne
      481 trshgillgv vgsdvplrel lklapryklg vhgyaflntn ngyilshpdl rplykegkkl
      541 kpkpnynsvd lsevewedqd eilrtaming etgylsmdvk vpvdkgkrvl fltndyfftd
      601 isgtpfslgv vlsrghgeyi llgntsveeg lhdllqpdls ladewiycit didpdhrkls
      661 qleavirflt geepdlecde elvqevlfda vvtapmeayw ttlalnmsme sevgvemafl
      721 gtraglmrss lyvgsekisn rkfltrkdke siftmdhfpl wyrraaehpp gsfiysivse
      781 ddaeggglpq vvtvstavav svdgkmgiaa avgvqikldl lqrkfwmamq qpndsdcsal
      841 dgacplscqd dilncflidn ngfilvskrp aetgkffgav dgsvmtqlln mgmfrrvtmy
      901 dyqamckvpy hhhsgarpll spiyaflaav kwlisdflif llefnmssfw hsdnladaka
      961 vfhhshrhkk hdtlqpcdte ypvfvyepai ketngliecg dcqkmfvaqq iassnllvlv
     1021 idatcdcsif ppvlldvkev kynasvkcer mrsqklrrrp dtchafhpee naqdcggaae
     1081 vsvsptllll plalllr
//
LOCUS       XP_053923765             370 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich repeat and transmembrane domain-containing protein 2
            [Cuculus canorus].
ACCESSION   XP_053923765
VERSION     XP_053923765.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067790.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..370
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..370
                     /product="leucine-rich repeat and transmembrane
                     domain-containing protein 2"
                     /calculated_mol_wt=41012
     Region          <51..>198
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          51..68
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          72..93
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          94..117
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          118..141
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          142..165
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          166..189
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          171..>261
                     /region_name="PCC"
                     /note="polycystin cation channel protein; TIGR00864"
                     /db_xref="CDD:188093"
     CDS             1..370
                     /gene="LRTM2"
                     /coded_by="XM_054067790.1:1017..2129"
                     /db_xref="GeneID:104055902"
ORIGIN      
        1 mlpttaghrw rsrflmrwqe acllgcwlsl caadsffacp ssckcnsgnl evdcsglgls
       61 sipsdiptnt rtflflnnkl silpgavfsn lsalqrldls nnfldqlpqn ifsdlgnlte
      121 lqlrnnsira ldkdllqhta llrqldlsin glaqipsgif ddlpalrsls lrsnrlqsld
      181 rvtfepltsl qqlqvgdnpw ecdcnlrdfk hwmewfsyrg gkidqlactl pkelkgkdmr
      241 mvpmemfnyc sqlddensst vldntgppct kgsptptksk agpeaeveps vgcpqkqryr
      301 pvsvrraigt viiagvvcgi vcimmvvaaa ygciyaslma kyhrelkkrq plmgdtegeh
      361 eeqkqissva
//
LOCUS       XP_009555386             370 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich repeat and transmembrane domain-containing protein 2
            [Cuculus canorus].
ACCESSION   XP_009555386
VERSION     XP_009555386.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557091.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..370
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..370
                     /product="leucine-rich repeat and transmembrane
                     domain-containing protein 2"
                     /calculated_mol_wt=41012
     Region          <51..>198
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          51..68
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          72..93
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          94..117
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          118..141
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          142..165
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          166..189
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          171..>261
                     /region_name="PCC"
                     /note="polycystin cation channel protein; TIGR00864"
                     /db_xref="CDD:188093"
     CDS             1..370
                     /gene="LRTM2"
                     /coded_by="XM_009557091.2:886..1998"
                     /db_xref="GeneID:104055902"
ORIGIN      
        1 mlpttaghrw rsrflmrwqe acllgcwlsl caadsffacp ssckcnsgnl evdcsglgls
       61 sipsdiptnt rtflflnnkl silpgavfsn lsalqrldls nnfldqlpqn ifsdlgnlte
      121 lqlrnnsira ldkdllqhta llrqldlsin glaqipsgif ddlpalrsls lrsnrlqsld
      181 rvtfepltsl qqlqvgdnpw ecdcnlrdfk hwmewfsyrg gkidqlactl pkelkgkdmr
      241 mvpmemfnyc sqlddensst vldntgppct kgsptptksk agpeaeveps vgcpqkqryr
      301 pvsvrraigt viiagvvcgi vcimmvvaaa ygciyaslma kyhrelkkrq plmgdtegeh
      361 eeqkqissva
//
LOCUS       XP_053923797            1967 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC104068395 isoform X1 [Cuculus canorus].
ACCESSION   XP_053923797
VERSION     XP_053923797.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067822.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1967
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1967
                     /product="uncharacterized protein LOC104068395 isoform X1"
                     /calculated_mol_wt=220284
     Region          <720..946
                     /region_name="PTZ00341"
                     /note="Ring-infected erythrocyte surface antigen;
                     Provisional"
                     /db_xref="CDD:173534"
     Region          1662..1789
                     /region_name="C2A_SLP-1_2"
                     /note="C2 domain first repeat present in
                     Synaptotagmin-like proteins 1 and 2; cd08393"
                     /db_xref="CDD:176039"
     Region          1802..1958
                     /region_name="C2B_SLP_1-2-3-4"
                     /note="C2 domain second repeat present in
                     Synaptotagmin-like proteins 1-4; cd04020"
                     /db_xref="CDD:175987"
     CDS             1..1967
                     /gene="LOC104068395"
                     /coded_by="XM_054067822.1:62..5965"
                     /db_xref="GeneID:104068395"
ORIGIN      
        1 mkvadeslsk vdlfkrssgt edrkhvsars qgreskeevd lsartavlpa ehsgpsmdgk
       61 peaaeelpfr kiknqntish tsfisqdiql mkermklkee eeneeqndks liefdctrpe
      121 ekecgqeikr qneksnlleh qeqklpaqkc esekaiqekr rireirafwd rdktipsdee
      181 kdisikinas dggtlkglrk sdkikpfaey lpnglddqsk nmlrsaklsc asqasrnegp
      241 ghafekpert ippnevneyt kmpkasnlqp svdatspsle skgkgekeas kgkvavfsqq
      301 kpsfqvlsik ekmkeiskdq isdpsqfqsl rnfwdtrvkl qsridrgvvs mpnnissity
      361 erkleeekgg dnvskqeliq qqtqtserek khktdsvlce lpvgsptlkg lnrmhikntd
      421 svqlgrkpvi lkppekmglp eqevkeciek siispkehnv slllqspsdk dalkeravdn
      481 wlclpieeee kkttplnikl pngeveetvd kvvllkaeld vfklglkkle keasevsssl
      541 kreenvskgt tfhsdqckvs ertveqsdni spadqkeeis kstgkvnvls tdehenvksl
      601 relfrefepf clrylaagka gtltssqrpq aglqnllret fafqpseyrk vgmkttddtn
      661 sisrtnfsve stcqedtgqp eevnetigks fapskvsglt salekllkea setpppkpkh
      721 adntvqrtmk mevgsmtyec dgelpgeire tveksfapsk vsgltsalek lleeasempp
      781 pkpkradntv qrtvemears mtydhngelp qeiretieks vapskvsglt saleklleea
      841 sempppkpkh adntvqrtae mevismtcrh ggespqeire sieksvapsk vssltsalek
      901 lleevsevpp tkskradntv qrtaeeeves vtykhdgelp qenredveks vslskvsslt
      961 palekllkea semppakpkh adgtvqrtae mevirmtykr dgelprevre tiemsvapsk
     1021 vsgltsalek llketsempp pkpkhadntv qrtmemeves mtyerdgelp geiretveks
     1081 fapskvtglt salvklleea sempppkpkr adntvqrtve mearsmtydh nrelpqevre
     1141 tieksvapsk vsgltsalek lleeasempp pnpkcvdntv qrtvemdves mtcecdaell
     1201 qesqetmers alsksecgml dvnlqrlpde vsetpasvlk nmdkkeqgki qadesvhaph
     1261 qqerdcsrei qetiektsvs ntakfgefss slenllqeay eisppiseel dkqehkqekf
     1321 gdcvfpsqka tlfvtisqpy salssyqtqi riatkgeplk qnirtsmndl svseieasdl
     1381 pkrkgavyki ekrsmvqvdl splerdtnmi askpfemnek grrdenisld dspnnsefks
     1441 llkfrrtstp lkdesdslqp egaqlcltsq pedneevedd gsnsgfrfsy ensdslsgtt
     1501 ssvcseeqln pvlmalkrsa drkmpsksle dipsatsnkg kinnpkdela lsaedgpklg
     1561 qhqernenaa gistvlsqpd klsshpeklk glsksvpsfl qeesddretd tasensyslg
     1621 rikkspsslt nlssssgmas lssvsgsims iysadfgnvd vkgniqfaid yveqlnelhi
     1681 licqckdlav advkrqrsdp yvktyllpek yklgkrktsv kkktlnpvyn eilrykiekg
     1741 llknqslnis vwhndtfgrn sflgeveldl gtwdwndksn kqinwfplkp rsstiavepe
     1801 nrgemklalq yvphpvggkk mvytgevhiw vkechdlpll rgnrlnsfik ctvlpdtsrk
     1861 srqktrtvak ttnpvfnhtm vydgfrpedv keacieltvw dhhklanhfl gglriglgtg
     1921 ksygttvdwm dstpdesalw kkmmnspntw iedtlplrml mvakltk
//
LOCUS       XP_053923806            1951 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC104068395 isoform X2 [Cuculus canorus].
ACCESSION   XP_053923806
VERSION     XP_053923806.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067831.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1951
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1951
                     /product="uncharacterized protein LOC104068395 isoform X2"
                     /calculated_mol_wt=218582
     Region          <720..946
                     /region_name="PTZ00341"
                     /note="Ring-infected erythrocyte surface antigen;
                     Provisional"
                     /db_xref="CDD:173534"
     Region          1646..1773
                     /region_name="C2A_SLP-1_2"
                     /note="C2 domain first repeat present in
                     Synaptotagmin-like proteins 1 and 2; cd08393"
                     /db_xref="CDD:176039"
     Region          1786..1942
                     /region_name="C2B_SLP_1-2-3-4"
                     /note="C2 domain second repeat present in
                     Synaptotagmin-like proteins 1-4; cd04020"
                     /db_xref="CDD:175987"
     CDS             1..1951
                     /gene="LOC104068395"
                     /coded_by="XM_054067831.1:62..5917"
                     /db_xref="GeneID:104068395"
ORIGIN      
        1 mkvadeslsk vdlfkrssgt edrkhvsars qgreskeevd lsartavlpa ehsgpsmdgk
       61 peaaeelpfr kiknqntish tsfisqdiql mkermklkee eeneeqndks liefdctrpe
      121 ekecgqeikr qneksnlleh qeqklpaqkc esekaiqekr rireirafwd rdktipsdee
      181 kdisikinas dggtlkglrk sdkikpfaey lpnglddqsk nmlrsaklsc asqasrnegp
      241 ghafekpert ippnevneyt kmpkasnlqp svdatspsle skgkgekeas kgkvavfsqq
      301 kpsfqvlsik ekmkeiskdq isdpsqfqsl rnfwdtrvkl qsridrgvvs mpnnissity
      361 erkleeekgg dnvskqeliq qqtqtserek khktdsvlce lpvgsptlkg lnrmhikntd
      421 svqlgrkpvi lkppekmglp eqevkeciek siispkehnv slllqspsdk dalkeravdn
      481 wlclpieeee kkttplnikl pngeveetvd kvvllkaeld vfklglkkle keasevsssl
      541 kreenvskgt tfhsdqckvs ertveqsdni spadqkeeis kstgkvnvls tdehenvksl
      601 relfrefepf clrylaagka gtltssqrpq aglqnllret fafqpseyrk vgmkttddtn
      661 sisrtnfsve stcqedtgqp eevnetigks fapskvsglt salekllkea setpppkpkh
      721 adntvqrtmk mevgsmtyec dgelpgeire tveksfapsk vsgltsalek lleeasempp
      781 pkpkradntv qrtvemears mtydhngelp qeiretieks vapskvsglt saleklleea
      841 sempppkpkh adntvqrtae mevismtcrh ggespqeire sieksvapsk vssltsalek
      901 lleevsevpp tkskradntv qrtaeeeves vtykhdgelp qenredveks vslskvsslt
      961 palekllkea semppakpkh adgtvqrtae mevirmtykr dgelprevre tiemsvapsk
     1021 vsgltsalek llketsempp pkpkhadntv qrtmemeves mtyerdgelp geiretveks
     1081 fapskvtglt salvklleea sempppkpkr adntvqrtve mearsmtydh nrelpqevre
     1141 tieksvapsk vsgltsalek lleeasempp pnpkcvdntv qrtvemdves mtcecdaell
     1201 qesqetmers alsksecgml dvnlqrlpde vsetpasvlk nmdkkeqgki qadesvhaph
     1261 qqerdcsrei qetiektsvs ntakfgefss slenllqeay eisppiseel dkqehkqekf
     1321 gdcvfpsqka tlfvtisqpy salssyqtqi riatkgeplk qnirtsmndl svseieasdl
     1381 pkrkgavyki ekrsmvqvdl splerdtnmi askpfemnek grrdenisld dspnnsefks
     1441 llkfrrtstp lkdesdslqp egaqlcltsq pedneevedd gsnsgfrfsy ensdslsgtt
     1501 ssvcseeqln pvlmalkrsa drkmpsksle dipsatsnkg kinnpkdela lsaedvstvl
     1561 sqpdklsshp eklkglsksv psflqeesdd retdtasens yslgrikksp ssltnlssss
     1621 gmaslssvsg simsiysadf gnvdvkgniq faidyveqln elhilicqck dlavadvkrq
     1681 rsdpyvktyl lpekyklgkr ktsvkkktln pvyneilryk iekgllknqs lnisvwhndt
     1741 fgrnsflgev eldlgtwdwn dksnkqinwf plkprsstia vepenrgemk lalqyvphpv
     1801 ggkkmvytge vhiwvkechd lpllrgnrln sfikctvlpd tsrksrqktr tvakttnpvf
     1861 nhtmvydgfr pedvkeacie ltvwdhhkla nhflgglrig lgtgksygtt vdwmdstpde
     1921 salwkkmmns pntwiedtlp lrmlmvaklt k
//
LOCUS       XP_053923813            1927 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC104068395 isoform X3 [Cuculus canorus].
ACCESSION   XP_053923813
VERSION     XP_053923813.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067838.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1927
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1927
                     /product="uncharacterized protein LOC104068395 isoform X3"
                     /calculated_mol_wt=216148
     Region          <720..946
                     /region_name="PTZ00341"
                     /note="Ring-infected erythrocyte surface antigen;
                     Provisional"
                     /db_xref="CDD:173534"
     Region          1622..1749
                     /region_name="C2A_SLP-1_2"
                     /note="C2 domain first repeat present in
                     Synaptotagmin-like proteins 1 and 2; cd08393"
                     /db_xref="CDD:176039"
     Region          1762..1918
                     /region_name="C2B_SLP_1-2-3-4"
                     /note="C2 domain second repeat present in
                     Synaptotagmin-like proteins 1-4; cd04020"
                     /db_xref="CDD:175987"
     CDS             1..1927
                     /gene="LOC104068395"
                     /coded_by="XM_054067838.1:62..5845"
                     /db_xref="GeneID:104068395"
ORIGIN      
        1 mkvadeslsk vdlfkrssgt edrkhvsars qgreskeevd lsartavlpa ehsgpsmdgk
       61 peaaeelpfr kiknqntish tsfisqdiql mkermklkee eeneeqndks liefdctrpe
      121 ekecgqeikr qneksnlleh qeqklpaqkc esekaiqekr rireirafwd rdktipsdee
      181 kdisikinas dggtlkglrk sdkikpfaey lpnglddqsk nmlrsaklsc asqasrnegp
      241 ghafekpert ippnevneyt kmpkasnlqp svdatspsle skgkgekeas kgkvavfsqq
      301 kpsfqvlsik ekmkeiskdq isdpsqfqsl rnfwdtrvkl qsridrgvvs mpnnissity
      361 erkleeekgg dnvskqeliq qqtqtserek khktdsvlce lpvgsptlkg lnrmhikntd
      421 svqlgrkpvi lkppekmglp eqevkeciek siispkehnv slllqspsdk dalkeravdn
      481 wlclpieeee kkttplnikl pngeveetvd kvvllkaeld vfklglkkle keasevsssl
      541 kreenvskgt tfhsdqckvs ertveqsdni spadqkeeis kstgkvnvls tdehenvksl
      601 relfrefepf clrylaagka gtltssqrpq aglqnllret fafqpseyrk vgmkttddtn
      661 sisrtnfsve stcqedtgqp eevnetigks fapskvsglt salekllkea setpppkpkh
      721 adntvqrtmk mevgsmtyec dgelpgeire tveksfapsk vsgltsalek lleeasempp
      781 pkpkradntv qrtvemears mtydhngelp qeiretieks vapskvsglt saleklleea
      841 sempppkpkh adntvqrtae mevismtcrh ggespqeire sieksvapsk vssltsalek
      901 lleevsevpp tkskradntv qrtaeeeves vtykhdgelp qenredveks vslskvsslt
      961 palekllkea semppakpkh adgtvqrtae mevirmtykr dgelprevre tiemsvapsk
     1021 vsgltsalek llketsempp pkpkhadntv qrtmemeves mtyerdgelp geiretveks
     1081 fapskvtglt salvklleea sempppkpkr adntvqrtve mearsmtydh nrelpqevre
     1141 tieksvapsk vsgltsalek lleeasempp pnpkcvdntv qrtvemdves mtcecdaell
     1201 qesqetmers alsksecgml dvnlqrlpde vsetpasvlk nmdkkeqgki qadesvhaph
     1261 qqerdcsrei qetiektsvs ntakfgefss slenllqeay eisppiseel dkqehkqekf
     1321 gdcvfpsqka tlfvtisqpy salssyqtqi riatkgeplk qnirtsmndl svseieasdl
     1381 pkrkgavyki ekrsmvqvdl splerdtnmi askpfemnek grrdenisld dspnnsefks
     1441 llkfrrtstp lkdesdslqp egaqlcltsq pedneevedd gsnsgfrfsy ensdslsgtt
     1501 ssvcseeqln pvlmalkrsa drkmpsksle dipsatsnkg kinnpkdela lsaedgpklg
     1561 qhqernenaa gistvlsqpd klsshpeklk glsksvpsfl qeevsgsims iysadfgnvd
     1621 vkgniqfaid yveqlnelhi licqckdlav advkrqrsdp yvktyllpek yklgkrktsv
     1681 kkktlnpvyn eilrykiekg llknqslnis vwhndtfgrn sflgeveldl gtwdwndksn
     1741 kqinwfplkp rsstiavepe nrgemklalq yvphpvggkk mvytgevhiw vkechdlpll
     1801 rgnrlnsfik ctvlpdtsrk srqktrtvak ttnpvfnhtm vydgfrpedv keacieltvw
     1861 dhhklanhfl gglriglgtg ksygttvdwm dstpdesalw kkmmnspntw iedtlplrml
     1921 mvakltk
//
LOCUS       XP_053923819            1911 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC104068395 isoform X4 [Cuculus canorus].
ACCESSION   XP_053923819
VERSION     XP_053923819.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067844.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1911
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1911
                     /product="uncharacterized protein LOC104068395 isoform X4"
                     /calculated_mol_wt=214446
     Region          <720..946
                     /region_name="PTZ00341"
                     /note="Ring-infected erythrocyte surface antigen;
                     Provisional"
                     /db_xref="CDD:173534"
     Region          1606..1733
                     /region_name="C2A_SLP-1_2"
                     /note="C2 domain first repeat present in
                     Synaptotagmin-like proteins 1 and 2; cd08393"
                     /db_xref="CDD:176039"
     Region          1746..1902
                     /region_name="C2B_SLP_1-2-3-4"
                     /note="C2 domain second repeat present in
                     Synaptotagmin-like proteins 1-4; cd04020"
                     /db_xref="CDD:175987"
     CDS             1..1911
                     /gene="LOC104068395"
                     /coded_by="XM_054067844.1:62..5797"
                     /db_xref="GeneID:104068395"
ORIGIN      
        1 mkvadeslsk vdlfkrssgt edrkhvsars qgreskeevd lsartavlpa ehsgpsmdgk
       61 peaaeelpfr kiknqntish tsfisqdiql mkermklkee eeneeqndks liefdctrpe
      121 ekecgqeikr qneksnlleh qeqklpaqkc esekaiqekr rireirafwd rdktipsdee
      181 kdisikinas dggtlkglrk sdkikpfaey lpnglddqsk nmlrsaklsc asqasrnegp
      241 ghafekpert ippnevneyt kmpkasnlqp svdatspsle skgkgekeas kgkvavfsqq
      301 kpsfqvlsik ekmkeiskdq isdpsqfqsl rnfwdtrvkl qsridrgvvs mpnnissity
      361 erkleeekgg dnvskqeliq qqtqtserek khktdsvlce lpvgsptlkg lnrmhikntd
      421 svqlgrkpvi lkppekmglp eqevkeciek siispkehnv slllqspsdk dalkeravdn
      481 wlclpieeee kkttplnikl pngeveetvd kvvllkaeld vfklglkkle keasevsssl
      541 kreenvskgt tfhsdqckvs ertveqsdni spadqkeeis kstgkvnvls tdehenvksl
      601 relfrefepf clrylaagka gtltssqrpq aglqnllret fafqpseyrk vgmkttddtn
      661 sisrtnfsve stcqedtgqp eevnetigks fapskvsglt salekllkea setpppkpkh
      721 adntvqrtmk mevgsmtyec dgelpgeire tveksfapsk vsgltsalek lleeasempp
      781 pkpkradntv qrtvemears mtydhngelp qeiretieks vapskvsglt saleklleea
      841 sempppkpkh adntvqrtae mevismtcrh ggespqeire sieksvapsk vssltsalek
      901 lleevsevpp tkskradntv qrtaeeeves vtykhdgelp qenredveks vslskvsslt
      961 palekllkea semppakpkh adgtvqrtae mevirmtykr dgelprevre tiemsvapsk
     1021 vsgltsalek llketsempp pkpkhadntv qrtmemeves mtyerdgelp geiretveks
     1081 fapskvtglt salvklleea sempppkpkr adntvqrtve mearsmtydh nrelpqevre
     1141 tieksvapsk vsgltsalek lleeasempp pnpkcvdntv qrtvemdves mtcecdaell
     1201 qesqetmers alsksecgml dvnlqrlpde vsetpasvlk nmdkkeqgki qadesvhaph
     1261 qqerdcsrei qetiektsvs ntakfgefss slenllqeay eisppiseel dkqehkqekf
     1321 gdcvfpsqka tlfvtisqpy salssyqtqi riatkgeplk qnirtsmndl svseieasdl
     1381 pkrkgavyki ekrsmvqvdl splerdtnmi askpfemnek grrdenisld dspnnsefks
     1441 llkfrrtstp lkdesdslqp egaqlcltsq pedneevedd gsnsgfrfsy ensdslsgtt
     1501 ssvcseeqln pvlmalkrsa drkmpsksle dipsatsnkg kinnpkdela lsaedvstvl
     1561 sqpdklsshp eklkglsksv psflqeevsg simsiysadf gnvdvkgniq faidyveqln
     1621 elhilicqck dlavadvkrq rsdpyvktyl lpekyklgkr ktsvkkktln pvyneilryk
     1681 iekgllknqs lnisvwhndt fgrnsflgev eldlgtwdwn dksnkqinwf plkprsstia
     1741 vepenrgemk lalqyvphpv ggkkmvytge vhiwvkechd lpllrgnrln sfikctvlpd
     1801 tsrksrqktr tvakttnpvf nhtmvydgfr pedvkeacie ltvwdhhkla nhflgglrig
     1861 lgtgksygtt vdwmdstpde salwkkmmns pntwiedtlp lrmlmvaklt k
//
LOCUS       XP_009569558             971 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptotagmin-like protein 2 isoform X5 [Cuculus canorus].
ACCESSION   XP_009569558
VERSION     XP_009569558.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009571263.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009569558.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..971
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..971
                     /product="synaptotagmin-like protein 2 isoform X5"
                     /calculated_mol_wt=108914
     Region          5..>41
                     /region_name="PHD_SF"
                     /note="PHD finger superfamily; cl22851"
                     /db_xref="CDD:473978"
     Region          666..793
                     /region_name="C2A_SLP-1_2"
                     /note="C2 domain first repeat present in
                     Synaptotagmin-like proteins 1 and 2; cd08393"
                     /db_xref="CDD:176039"
     Region          806..962
                     /region_name="C2B_SLP_1-2-3-4"
                     /note="C2 domain second repeat present in
                     Synaptotagmin-like proteins 1-4; cd04020"
                     /db_xref="CDD:175987"
     CDS             1..971
                     /gene="LOC104068395"
                     /coded_by="XM_009571263.2:340..3255"
                     /db_xref="GeneID:104068395"
ORIGIN      
        1 midlsfltee eqeaimkvlq rdaelkraee ervrhlpekv kddvqlknms gqwfyeaksk
       61 rhrdrihgad iirasmrrkp atlaevsqnr snkaknswvs nvnkevfvpp elhsiveqqe
      121 eqpqlkasss skpiismlek peersmkttv spvkqrrnpf nsiasgddln svesenrpai
      181 lpqlsnmeil slseesqpkp dlendeteel kkpsveptge sqkglvkhpv pkvrkliqka
      241 tdpvsqkdfv pkpakrterv ngvgtppkgi lkrtssssst dsevrvsqml dvqkknalpt
      301 gtifegeaek nslkeeveds tqkvedstqi sleklkqvrf ssstdkgkpl espqlhhgre
      361 kgefdllesd etkrsesdai tsdsfrnkqi salqpssalq vktiddlqdd tsasspcdti
      421 ksvflvnetl qsktvtpkkl etpqktssnv lpnsnnelsv detrenkanq flnheskshk
      481 nftdehqlsa kteahevsnt hatsrqqgse eqlnpvlmal krsadrkmps ksledipsat
      541 snkgkinnpk delalsaedg pklgqhqern enaagistvl sqpdklsshp eklkglsksv
      601 psflqeesdd retdtasens yslgrikksp ssltnlssss gmaslssvsg simsiysadf
      661 gnvdvkgniq faidyveqln elhilicqck dlavadvkrq rsdpyvktyl lpekyklgkr
      721 ktsvkkktln pvyneilryk iekgllknqs lnisvwhndt fgrnsflgev eldlgtwdwn
      781 dksnkqinwf plkprsstia vepenrgemk lalqyvphpv ggkkmvytge vhiwvkechd
      841 lpllrgnrln sfikctvlpd tsrksrqktr tvakttnpvf nhtmvydgfr pedvkeacie
      901 ltvwdhhkla nhflgglrig lgtgksygtt vdwmdstpde salwkkmmns pntwiedtlp
      961 lrmlmvaklt k
//
LOCUS       XP_053923838             971 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptotagmin-like protein 2 isoform X5 [Cuculus canorus].
ACCESSION   XP_053923838
VERSION     XP_053923838.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067863.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..971
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..971
                     /product="synaptotagmin-like protein 2 isoform X5"
                     /calculated_mol_wt=108914
     Region          5..>41
                     /region_name="PHD_SF"
                     /note="PHD finger superfamily; cl22851"
                     /db_xref="CDD:473978"
     Region          666..793
                     /region_name="C2A_SLP-1_2"
                     /note="C2 domain first repeat present in
                     Synaptotagmin-like proteins 1 and 2; cd08393"
                     /db_xref="CDD:176039"
     Region          806..962
                     /region_name="C2B_SLP_1-2-3-4"
                     /note="C2 domain second repeat present in
                     Synaptotagmin-like proteins 1-4; cd04020"
                     /db_xref="CDD:175987"
     CDS             1..971
                     /gene="LOC104068395"
                     /coded_by="XM_054067863.1:452..3367"
                     /db_xref="GeneID:104068395"
ORIGIN      
        1 midlsfltee eqeaimkvlq rdaelkraee ervrhlpekv kddvqlknms gqwfyeaksk
       61 rhrdrihgad iirasmrrkp atlaevsqnr snkaknswvs nvnkevfvpp elhsiveqqe
      121 eqpqlkasss skpiismlek peersmkttv spvkqrrnpf nsiasgddln svesenrpai
      181 lpqlsnmeil slseesqpkp dlendeteel kkpsveptge sqkglvkhpv pkvrkliqka
      241 tdpvsqkdfv pkpakrterv ngvgtppkgi lkrtssssst dsevrvsqml dvqkknalpt
      301 gtifegeaek nslkeeveds tqkvedstqi sleklkqvrf ssstdkgkpl espqlhhgre
      361 kgefdllesd etkrsesdai tsdsfrnkqi salqpssalq vktiddlqdd tsasspcdti
      421 ksvflvnetl qsktvtpkkl etpqktssnv lpnsnnelsv detrenkanq flnheskshk
      481 nftdehqlsa kteahevsnt hatsrqqgse eqlnpvlmal krsadrkmps ksledipsat
      541 snkgkinnpk delalsaedg pklgqhqern enaagistvl sqpdklsshp eklkglsksv
      601 psflqeesdd retdtasens yslgrikksp ssltnlssss gmaslssvsg simsiysadf
      661 gnvdvkgniq faidyveqln elhilicqck dlavadvkrq rsdpyvktyl lpekyklgkr
      721 ktsvkkktln pvyneilryk iekgllknqs lnisvwhndt fgrnsflgev eldlgtwdwn
      781 dksnkqinwf plkprsstia vepenrgemk lalqyvphpv ggkkmvytge vhiwvkechd
      841 lpllrgnrln sfikctvlpd tsrksrqktr tvakttnpvf nhtmvydgfr pedvkeacie
      901 ltvwdhhkla nhflgglrig lgtgksygtt vdwmdstpde salwkkmmns pntwiedtlp
      961 lrmlmvaklt k
//
LOCUS       XP_053923846             835 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptotagmin-like protein 2 isoform X6 [Cuculus canorus].
ACCESSION   XP_053923846
VERSION     XP_053923846.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067871.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..835
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..835
                     /product="synaptotagmin-like protein 2 isoform X6"
                     /calculated_mol_wt=93141
     Region          530..657
                     /region_name="C2A_SLP-1_2"
                     /note="C2 domain first repeat present in
                     Synaptotagmin-like proteins 1 and 2; cd08393"
                     /db_xref="CDD:176039"
     Region          670..826
                     /region_name="C2B_SLP_1-2-3-4"
                     /note="C2 domain second repeat present in
                     Synaptotagmin-like proteins 1-4; cd04020"
                     /db_xref="CDD:175987"
     CDS             1..835
                     /gene="LOC104068395"
                     /coded_by="XM_054067871.1:111..2618"
                     /db_xref="GeneID:104068395"
ORIGIN      
        1 mlekpeersm kttvspvkqr rnpfnsiasg ddlnsvesen rpailpqlsn meilslsees
       61 qpkpdlende teelkkpsve ptgesqkglv khpvpkvrkl iqkatdpvsq kdfvpkpakr
      121 tervngvgtp pkgilkrtss ssstdsevrv sqmldvqkkn alptgtifeg eaeknslkee
      181 vedstqkved stqisleklk qvrfssstdk gkplespqlh hgrekgefdl lesdetkrse
      241 sdaitsdsfr nkqisalqps salqvktidd lqddtsassp cdtiksvflv netlqsktvt
      301 pkkletpqkt ssnvlpnsnn elsvdetren kanqflnhes kshknftdeh qlsakteahe
      361 vsnthatsrq qgseeqlnpv lmalkrsadr kmpsksledi psatsnkgki nnpkdelals
      421 aedgpklgqh qernenaagi stvlsqpdkl sshpeklkgl sksvpsflqe esddretdta
      481 sensyslgri kkspssltnl ssssgmasls svsgsimsiy sadfgnvdvk gniqfaidyv
      541 eqlnelhili cqckdlavad vkrqrsdpyv ktyllpekyk lgkrktsvkk ktlnpvynei
      601 lrykiekgll knqslnisvw hndtfgrnsf lgeveldlgt wdwndksnkq inwfplkprs
      661 stiavepenr gemklalqyv phpvggkkmv ytgevhiwvk echdlpllrg nrlnsfikct
      721 vlpdtsrksr qktrtvaktt npvfnhtmvy dgfrpedvke acieltvwdh hklanhflgg
      781 lriglgtgks ygttvdwmds tpdesalwkk mmnspntwie dtlplrmlmv akltk
//
LOCUS       XP_053923859             224 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 126A isoform X1 [Cuculus canorus].
ACCESSION   XP_053923859
VERSION     XP_053923859.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067884.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..224
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..224
                     /product="transmembrane protein 126A isoform X1"
                     /calculated_mol_wt=25004
     Region          37..213
                     /region_name="TMEM126"
                     /note="Transmembrane protein 126; pfam07114"
                     /db_xref="CDD:462092"
     CDS             1..224
                     /gene="LOC104068394"
                     /coded_by="XM_054067884.1:243..917"
                     /db_xref="GeneID:104068394"
ORIGIN      
        1 mkpssgeihl ekdikmtgre flelespqqr rylerlkrie vlqktfselp kedqnlcnhg
       61 ayffaanssl cglaannffr nilhirraaf vtalpmavip flstaavyev fvreplfsge
      121 lncevctvar ggllgavvgg fypvllalpm naslaaryss splpgkenll qywltisrpv
      181 frkmslgvli qvltgiylat khhgiyvkml qqmnakrdpe elea
//
LOCUS       XP_053923868             209 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 126A isoform X2 [Cuculus canorus].
ACCESSION   XP_053923868
VERSION     XP_053923868.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067893.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..209
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..209
                     /product="transmembrane protein 126A isoform X2"
                     /calculated_mol_wt=23310
     Region          22..198
                     /region_name="TMEM126"
                     /note="Transmembrane protein 126; pfam07114"
                     /db_xref="CDD:462092"
     CDS             1..209
                     /gene="LOC104068394"
                     /coded_by="XM_054067893.1:1376..2005"
                     /db_xref="GeneID:104068394"
ORIGIN      
        1 mtgreflele spqqrryler lkrievlqkt fselpkedqn lcnhgayffa ansslcglaa
       61 nnffrnilhi rraafvtalp mavipflsta avyevfvrep lfsgelncev ctvarggllg
      121 avvggfypvl lalpmnasla arysssplpg kenllqywlt isrpvfrkms lgvliqvltg
      181 iylatkhhgi yvkmlqqmna krdpeelea
//
LOCUS       XP_053923877             209 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 126A isoform X2 [Cuculus canorus].
ACCESSION   XP_053923877
VERSION     XP_053923877.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067902.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..209
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..209
                     /product="transmembrane protein 126A isoform X2"
                     /calculated_mol_wt=23310
     Region          22..198
                     /region_name="TMEM126"
                     /note="Transmembrane protein 126; pfam07114"
                     /db_xref="CDD:462092"
     CDS             1..209
                     /gene="LOC104068394"
                     /coded_by="XM_054067902.1:49..678"
                     /db_xref="GeneID:104068394"
ORIGIN      
        1 mtgreflele spqqrryler lkrievlqkt fselpkedqn lcnhgayffa ansslcglaa
       61 nnffrnilhi rraafvtalp mavipflsta avyevfvrep lfsgelncev ctvarggllg
      121 avvggfypvl lalpmnasla arysssplpg kenllqywlt isrpvfrkms lgvliqvltg
      181 iylatkhhgi yvkmlqqmna krdpeelea
//
LOCUS       XP_053923888             888 aa            linear   VRT 09-MAR-2023
DEFINITION  integrator complex subunit 6 isoform X1 [Cuculus canorus].
ACCESSION   XP_053923888
VERSION     XP_053923888.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067913.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..888
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..888
                     /product="integrator complex subunit 6 isoform X1"
                     /calculated_mol_wt=100250
     Region          4..103
                     /region_name="VWA_2"
                     /note="von Willebrand factor type A domain; pfam13519"
                     /db_xref="CDD:463909"
     Region          808..869
                     /region_name="INT_SG_DDX_CT_C"
                     /note="INTS6/SAGE1/DDX26B/CT45 C-terminus; pfam15300"
                     /db_xref="CDD:464626"
     CDS             1..888
                     /gene="INTS6"
                     /coded_by="XM_054067913.1:141..2807"
                     /db_xref="GeneID:104066141"
ORIGIN      
        1 mpillflidt sasmnqrthl gttyldvakg avetfmklra rdpasrgdry mlvtfeeppy
       61 aikagwkenh atfmnelknl qaeglttlgq slrtafdlln lnrlvtgidn ygqgrnpffl
      121 epaiiitvtd gskltttsgi qeelhlplns plpgseltke pfrwdqrlfa lvlrlpgita
      181 peseqmtgvp vddsaitpmc evtggrsycv csprmlnqcl eslvqkvqsg vvinfekagp
      241 dpspiddgqv dvsrpfgpqp whschrliyv rpnpktgvpi ghwpvpesfw pdqnsptlpp
      301 rtshpvvkfs ctdcepmvid klpfdkyele pspltqfile rkspqtcwqv yvsnsakyse
      361 lghpfgylka stalncvnlf vmpynypvll pllddlfkvh kakptlkwrq sfesylktmp
      421 pyylgplkka vrmmgapnli adnveyglsy svisylkkls qqakiesdrv igsvgkkvaq
      481 etgikvrsrs hnlsmahrnd fqhllqgitg eiphrpldln mkeyagfqia llnkdlkpqt
      541 frnaydiprr nlldqltrmr snllkstrkf lkgqdedqvh svpiaqmgny qeylkqipsp
      601 lreldpdqpr rlhtfgnpfk ldkkgmmide adefvsgpqn khkrpgepnm qgipkrrrcm
      661 spllrgrpqt ppivnnhlgg kgpptpvaqa qpdlvkpipi nktseannev tmddmvenhv
      721 tdplssdifp ntvgsefsvs sspfnsldrl aahaedvghe hlgnnlnvdg flenheesvs
      781 keqtteenlp msspskgkkt vhcrssrein ielraqimke irkpgrkyer iffllkhvqg
      841 slqtrliflq nvikeasrfk krmlieqles fleeihrrsn qvnhinss
//
LOCUS       XP_053923897             816 aa            linear   VRT 09-MAR-2023
DEFINITION  integrator complex subunit 6 isoform X2 [Cuculus canorus].
ACCESSION   XP_053923897
VERSION     XP_053923897.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067922.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..816
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..816
                     /product="integrator complex subunit 6 isoform X2"
                     /calculated_mol_wt=92204
     Region          4..103
                     /region_name="VWA_2"
                     /note="von Willebrand factor type A domain; pfam13519"
                     /db_xref="CDD:463909"
     Region          736..797
                     /region_name="INT_SG_DDX_CT_C"
                     /note="INTS6/SAGE1/DDX26B/CT45 C-terminus; pfam15300"
                     /db_xref="CDD:464626"
     CDS             1..816
                     /gene="INTS6"
                     /coded_by="XM_054067922.1:141..2591"
                     /db_xref="GeneID:104066141"
ORIGIN      
        1 mpillflidt sasmnqrthl gttyldvakg avetfmklra rdpasrgdry mlvtfeeppy
       61 aikagwkenh atfmnelknl qaeglttlgq slrtafdlln lnrlvtgidn ygqgrnpffl
      121 epaiiitvtd gskltttsgi qeelhlplns plpgseltke pfrwdqrlfa lvlrlpgita
      181 peseqmtgvp vddsaitpmc evtggrsycv csprmlnqcl eslvqkvqsg vvinfekagp
      241 dpspiddgqv dvsrpfgpqp whschrliyv rpnpktgvpi ghwpvpesfw pdqnsptlpp
      301 rtshpvvkfs ctdcepmvid klpfdkyele pspltqfile rkspqtcwqv yvsnsakyse
      361 lghpfgylka stalncvnlf vmpynypvll pllddlfkvh kakptlkwrq sfesylktmp
      421 pyylgplkka vrmmgapnli adnveyglsy svisylkkls qqdlkpqtfr naydiprrnl
      481 ldqltrmrsn llkstrkflk gqdedqvhsv piaqmgnyqe ylkqipsplr eldpdqprrl
      541 htfgnpfkld kkgmmidead efvsgpqnkh krpgepnmqg ipkrrrcmsp llrgrpqtpp
      601 ivnnhlggkg pptpvaqaqp dlvkpipink tseannevtm ddmvenhvtd plssdifpnt
      661 vgsefsvsss pfnsldrlaa haedvghehl gnnlnvdgfl enheesvske qtteenlpms
      721 spskgkktvh crssreinie lraqimkeir kpgrkyerif fllkhvqgsl qtrliflqnv
      781 ikeasrfkkr mlieqlesfl eeihrrsnqv nhinss
//
LOCUS       XP_053923911             457 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: serpin E3 [Cuculus canorus].
ACCESSION   XP_053923911
VERSION     XP_053923911.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067936.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 2 genomic stop codon
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..457
                     /product="LOW QUALITY PROTEIN: serpin E3"
                     /calculated_mol_wt=50298
     Region          74..443
                     /region_name="serpinE3"
                     /note="serpin family E member 3; cd19574"
                     /db_xref="CDD:381040"
     Site            407..432
                     /site_type="other"
                     /note="reactive center loop (RCL)"
                     /db_xref="CDD:381040"
     CDS             1..457
                     /gene="SERPINE3"
                     /coded_by="XM_054067936.1:55..1428"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     substituted 2 bases at 2 genomic stop codons"
                     /db_xref="GeneID:104066178"
ORIGIN      
        1 mqshdlvftp lpikegdkty iesfhsdtqk dterqdhlte ltvxlsgedc sqlsxmlsif
       61 fsafilstcc ltkgncvsyd elkelktefa inlyrhvsea enrtnlvvsp asvaislell
      121 qfgaqgntlm elqnalgyni hdesvqdflh tayegatnss qgtvvqlacs ffvdasvqll
      181 phfaaraarw ansslqktnf tgpnsttaqi qewitsslgd gdihgmples agsplsqval
      241 vstmyfksvw qkkfsfmdtq mlpfttvkgs tlkvptmhht aevnygqfqt asleafsmve
      301 lpylgeklsm flvlpnhkrt slsqieshfs aqtitlwtns lkrmkmdifl prfsiqslsd
      361 lktvfsalgi rdafdpttan fkgiseegsl yiseaihkae ievtedgtkg agatamvllk
      421 rsrtpvfkad rpftfflrqa ntgthppxfs srilhke
//
LOCUS       XP_053923923            1304 aa            linear   VRT 09-MAR-2023
DEFINITION  ubinuclein-2 [Cuculus canorus].
ACCESSION   XP_053923923
VERSION     XP_053923923.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067948.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1304
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1304
                     /product="ubinuclein-2"
                     /calculated_mol_wt=139749
     Region          162..213
                     /region_name="HUN"
                     /note="HPC2 and ubinuclein domain; pfam08729"
                     /db_xref="CDD:462581"
     Region          422..636
                     /region_name="UBN_AB"
                     /note="Ubinuclein conserved middle domain; pfam14075"
                     /db_xref="CDD:464081"
     Region          <997..1182
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     CDS             1..1304
                     /gene="UBN2"
                     /coded_by="XM_054067948.1:312..4226"
                     /db_xref="GeneID:104055523"
ORIGIN      
        1 maeprrvpfv slspvrdpep pplgreapep pheppppsss ssssssssss ssrpessres
       61 gggraeppra epppprlqqt rqepprealp arrtvrlela lkdpteegcv efsypelllc
      121 gdarkksvhs ddpfnderre qhevevlakk feakyggkph khrkdrlqdl idigygydet
      181 dpfidnseay delvpasltt kyggfyintg tlqfrqasds ededfaedkk hrppkiaklk
      241 esedrgmkkr krkdegteke kkprkmkvpk qlgvmalnsh ksekkkkkly kdslslaami
      301 rkfqkekeam rkkesspkpp vtvatstpsk vsssslsagn dicdlnlrin dpvlsifgst
      361 nepellqeae salemlgdid ldklldgtsd gspvselsge ngnitqaayt pqvmtpkqvp
      421 alpeglpmll ekrigdlrta akmfdeegrk kfftqdmnni lldielqlqe inpairngvy
      481 shleafvpcn kdtlikrlkk lhlnvqddrl replqklkla vsnvmpeqlc kyqedcqarn
      541 qaknaklqae derekngsee dddekpgkrv vgprkkfhwd dtvrsllcnl vkiklgcyel
      601 epnrsqsaed ylktfmetev kplwpkgwmq armlfkesrs vhnhltsapa kkkvilapkp
      661 kvkdsspkke qktcmssvns scatvlssst pvctpasssc tpapeticld dsldedlsfh
      721 ppsldsisda lavinngakg splgstidap tsrprpglre eklasimskl platskkvep
      781 tqtphsssli aghtgpvpkk pqdlvhtgis sgliagssiq npkvsleplp akllqqglqr
      841 ssqiqaasss sqthvssskt qtaistssqr tkdanilvss seaqggssst sqatkvhqhs
      901 avqqkyvspl qatisksqsn avvklssnpk lscsspvika qdksvvyrlp lsnpssgsgs
      961 qvshplvsrt tsststssny lakamvsqvs sqgfkppfsm aaspkpavsp kptaskpsvt
     1021 pkpnaspkfs skstssprpa ttpssssssa lvsqsshssn nplhkqtsgv nisrqsptmn
     1081 llpsnrtsgl qpaknpqass klpnsspsgt vgknnvggvg mnvpasrgsn lnssgasrts
     1141 lsggagsgtq gatkqlstph rpssasgspv vaasvqstag asllanaspl tlmasplsvt
     1201 sqnvtsaplt pfgmlgglvp vtvpfqfple llgfgtdtag vtttsgstsa afhhsltqnl
     1261 lkglqpgaqh aatlshsplp ahlqqaytdg gqskgdtklq rknq
//
LOCUS       XP_053923933            1041 aa            linear   VRT 09-MAR-2023
DEFINITION  immunoglobulin superfamily member 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053923933
VERSION     XP_053923933.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067958.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1041
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1041
                     /product="immunoglobulin superfamily member 3 isoform X1"
                     /calculated_mol_wt=117707
     Region          33..140
                     /region_name="V-set"
                     /note="Immunoglobulin V-set domain; pfam07686"
                     /db_xref="CDD:462230"
     Region          147..250
                     /region_name="IgV"
                     /note="Immunoglobulin variable domain (IgV); cd00099"
                     /db_xref="CDD:409355"
     Region          147..167
                     /region_name="FR1"
                     /note="FR1 [structural motif]"
                     /db_xref="CDD:409355"
     Region          147..150
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409355"
     Region          154..156
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409355"
     Region          160..168
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409355"
     Region          168..178
                     /region_name="CDR1"
                     /note="CDR1 [structural motif]"
                     /db_xref="CDD:409355"
     Site            order(178..179,181,248)
                     /site_type="other"
                     /note="antigen binding site [polypeptide binding]"
                     /db_xref="CDD:409355"
     Region          179..193
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409355"
     Region          179..185
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409355"
     Region          191..194
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409355"
     Region          194..218
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409355"
     Region          218..223
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409355"
     Region          219..247
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409355"
     Region          227..233
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409355"
     Region          241..248
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409355"
     Region          282..378
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          297..301
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409383"
     Region          314..318
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409383"
     Region          358..362
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409383"
     Region          372..377
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409383"
     Region          552..649
                     /region_name="V-set"
                     /note="Immunoglobulin V-set domain; pfam07686"
                     /db_xref="CDD:462230"
     Region          684..788
                     /region_name="IgV"
                     /note="Immunoglobulin variable domain (IgV); cd00099"
                     /db_xref="CDD:409355"
     Region          684..704
                     /region_name="FR1"
                     /note="FR1 [structural motif]"
                     /db_xref="CDD:409355"
     Region          684..687
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409355"
     Region          691..693
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409355"
     Region          697..705
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409355"
     Region          705..713
                     /region_name="CDR1"
                     /note="CDR1 [structural motif]"
                     /db_xref="CDD:409355"
     Site            order(713..714,716,786)
                     /site_type="other"
                     /note="antigen binding site [polypeptide binding]"
                     /db_xref="CDD:409355"
     Region          714..734
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409355"
     Region          714..722
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409355"
     Region          727..735
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409355"
     Region          735..756
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409355"
     Region          756..761
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409355"
     Region          757..785
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409355"
     Region          765..771
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409355"
     Region          779..786
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409355"
     CDS             1..1041
                     /gene="IGSF3"
                     /coded_by="XM_054067958.1:749..3874"
                     /db_xref="GeneID:104055984"
ORIGIN      
        1 mrtpplgsll lllgmalaqr qvtvqegply rtegshitlw ckvsgyqgpa eqnfqwsiyl
       61 psaperevqi vstvdssfpy aiytqrvrsr giyvervqgd avllhitelq drdageyech
      121 tpntderyfg sysakmnlvv ipdslrvtav pqtlnkvehd slelkcevsk stvqhshvsi
      181 awyrqrgsev pvevislsrd fvlragnvya qrqatgdvrl dkvgettskl tiynlhpsdq
      241 gefyceaaew iqdpdkswya mtrkrsqgai vnvqatdkef svrletdkrt yiigepvefr
      301 cileaqnvpd ryfsiswafn ssliaslgpn avpvlnnefa qrealgqlkv akesdnifvl
      361 kiyrlrleds gkyncrvter ektvtgdfid keskrpknip itvlplkagf avtaisrtpg
      421 vtynesfdlq ciikphypsw vpvsvtwrfq pagstefhdl vtftrdggvq wgdrymgfrt
      481 rtaiekaess nnvrlsisra sdteagkyqc vaelwrknyn sswtrladrt snlleirvlr
      541 pvtklqvsks krsitlvenr piplncsvks qtspdshfav lwyvhkpsda dgklilktth
      601 nsafeygtya eeeglrgrlq ferlasgglf sltvqraevr dsgsyychve ewllspnhaw
      661 yklaeevsgr tevtvkqpdn rlqvnqthkn itvlenqwvt leclvssrts pssqlsvewy
      721 vwrpghpeke avarlsrqst lrygdlvvqg dlrsrlhmes pspglyllsi qnatvrdsgv
      781 ydcrveewll dpsdrwykra edlsglitla vkqpdptlqv dtatanltvq ekesfpldcs
      841 ilsrsspesh favtwynlra kevgghtedn eeeeeekeav lsvgpdavfs peasrwegrl
      901 rfqrlsavlf rltvlqagga dtgnyschve ewladpngvw yrlaeeesgt vavhvqdags
      961 tlqsvicsnd alfyfvffyp fpifgiliit illvrfksrn snknsegkng vpllwikeph
     1021 lnysptclep pvlsihpgtm d
//
LOCUS       XP_053923937            1175 aa            linear   VRT 09-MAR-2023
DEFINITION  immunoglobulin superfamily member 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053923937
VERSION     XP_053923937.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067962.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1175
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1175
                     /product="immunoglobulin superfamily member 3 isoform X2"
                     /calculated_mol_wt=132624
     Region          33..140
                     /region_name="V-set"
                     /note="Immunoglobulin V-set domain; pfam07686"
                     /db_xref="CDD:462230"
     Region          147..250
                     /region_name="IgV"
                     /note="Immunoglobulin variable domain (IgV); cd00099"
                     /db_xref="CDD:409355"
     Region          147..167
                     /region_name="FR1"
                     /note="FR1 [structural motif]"
                     /db_xref="CDD:409355"
     Region          147..150
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409355"
     Region          154..156
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409355"
     Region          160..168
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409355"
     Region          168..178
                     /region_name="CDR1"
                     /note="CDR1 [structural motif]"
                     /db_xref="CDD:409355"
     Site            order(178..179,181,248)
                     /site_type="other"
                     /note="antigen binding site [polypeptide binding]"
                     /db_xref="CDD:409355"
     Region          179..193
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409355"
     Region          179..185
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409355"
     Region          191..194
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409355"
     Region          194..218
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409355"
     Region          218..223
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409355"
     Region          219..247
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409355"
     Region          227..233
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409355"
     Region          241..248
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409355"
     Region          282..378
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          297..301
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409383"
     Region          314..318
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409383"
     Region          358..362
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409383"
     Region          372..377
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409383"
     Region          421..512
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          686..783
                     /region_name="V-set"
                     /note="Immunoglobulin V-set domain; pfam07686"
                     /db_xref="CDD:462230"
     Region          818..922
                     /region_name="IgV"
                     /note="Immunoglobulin variable domain (IgV); cd00099"
                     /db_xref="CDD:409355"
     Region          818..838
                     /region_name="FR1"
                     /note="FR1 [structural motif]"
                     /db_xref="CDD:409355"
     Region          818..821
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409355"
     Region          825..827
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409355"
     Region          831..839
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409355"
     Region          839..847
                     /region_name="CDR1"
                     /note="CDR1 [structural motif]"
                     /db_xref="CDD:409355"
     Site            order(847..848,850,920)
                     /site_type="other"
                     /note="antigen binding site [polypeptide binding]"
                     /db_xref="CDD:409355"
     Region          848..868
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409355"
     Region          848..856
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409355"
     Region          861..869
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409355"
     Region          869..890
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409355"
     Region          890..895
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409355"
     Region          891..919
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409355"
     Region          899..905
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409355"
     Region          913..920
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409355"
     CDS             1..1175
                     /gene="IGSF3"
                     /coded_by="XM_054067962.1:194..3721"
                     /db_xref="GeneID:104055984"
ORIGIN      
        1 mrtpplgsll lllgmalaqr qvtvqegply rtegshitlw ckvsgyqgpa eqnfqwsiyl
       61 psaperevqi vstvdssfpy aiytqrvrsr giyvervqgd avllhitelq drdageyech
      121 tpntderyfg sysakmnlvv ipdslrvtav pqtlnkvehd slelkcevsk stvqhshvsi
      181 awyrqrgsev pvevislsrd fvlragnvya qrqatgdvrl dkvgettskl tiynlhpsdq
      241 gefyceaaew iqdpdkswya mtrkrsqgai vnvqatdkef svrletdkrt yiigepvefr
      301 cileaqnvpd ryfsiswafn ssliaslgpn avpvlnnefa qrealgqlkv akesdnifvl
      361 kiyrlrleds gkyncrvter ektvtgdfid keskrpknip itvlplktsi sleiinnasn
      421 vlegeslrfg cnvrsgfgpq srlsiawhlv dklnrrseiv rldregtlqp gpsyaerssy
      481 ggiqveqvrp gsftleifns ikadeghyec rvaewtrtld gewqmvgerh agtpvsital
      541 eagfavtais rtpgvtynes fdlqciikph ypswvpvsvt wrfqpagste fhdlvtftrd
      601 ggvqwgdrym gfrtrtaiek aessnnvrls israsdteag kyqcvaelwr knynsswtrl
      661 adrtsnllei rvlrpvtklq vskskrsitl venrpiplnc svksqtspds hfavlwyvhk
      721 psdadgklil ktthnsafey gtyaeeeglr grlqferlas gglfsltvqr aevrdsgsyy
      781 chveewllsp nhawyklaee vsgrtevtvk qpdnrlqvnq thknitvlen qwvtleclvs
      841 srtspssqls vewyvwrpgh pekeavarls rqstlrygdl vvqgdlrsrl hmespspgly
      901 llsiqnatvr dsgvydcrve ewlldpsdrw ykraedlsgl itlavkqpdp tlqvdtatan
      961 ltvqekesfp ldcsilsrss peshfavtwy nlrakevggh tedneeeeee keavlsvgpd
     1021 avfspeasrw egrlrfqrls avlfrltvlq aggadtgnys chveewladp ngvwyrlaee
     1081 esgtvavhvq dagstlqsvi csndalfyfv ffypfpifgi liitillvrf ksrnsnknse
     1141 gkngvpllwi kephlnyspt cleppvlsih pgtmd
//
LOCUS       XP_053923945            1005 aa            linear   VRT 09-MAR-2023
DEFINITION  immunoglobulin superfamily member 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053923945
VERSION     XP_053923945.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067970.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1005
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1005
                     /product="immunoglobulin superfamily member 2 isoform X1"
                     /calculated_mol_wt=112344
     Region          21..145
                     /region_name="V-set"
                     /note="Immunoglobulin V-set domain; pfam07686"
                     /db_xref="CDD:462230"
     Region          155..256
                     /region_name="IgV"
                     /note="Immunoglobulin variable domain (IgV); cd00099"
                     /db_xref="CDD:409355"
     Region          158..160
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409355"
     Region          164..172
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409355"
     Region          172..182
                     /region_name="CDR1"
                     /note="CDR1 [structural motif]"
                     /db_xref="CDD:409355"
     Site            order(182..183,185,254)
                     /site_type="other"
                     /note="antigen binding site [polypeptide binding]"
                     /db_xref="CDD:409355"
     Region          183..200
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409355"
     Region          183..189
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409355"
     Region          198..201
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409355"
     Region          201..219
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409355"
     Region          219..229
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409355"
     Region          220..253
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409355"
     Region          233..239
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409355"
     Region          247..254
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409355"
     Region          296..397
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          303..307
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409355"
     Region          320..324
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409355"
     Region          364..368
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409355"
     Region          378..383
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409355"
     Region          424..535
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          544..644
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          559..563
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409385"
     Region          577..581
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409385"
     Region          625..629
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409385"
     Region          639..644
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409385"
     Region          683..783
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          694..698
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409355"
     Region          710..714
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409355"
     Region          761..765
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409355"
     Region          775..780
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409355"
     Region          820..918
                     /region_name="IgV"
                     /note="Immunoglobulin variable domain (IgV); cd00099"
                     /db_xref="CDD:409355"
     Region          821..823
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409355"
     Region          827..835
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409355"
     Region          835..843
                     /region_name="CDR1"
                     /note="CDR1 [structural motif]"
                     /db_xref="CDD:409355"
     Site            order(843..844,848,911)
                     /site_type="other"
                     /note="antigen binding site [polypeptide binding]"
                     /db_xref="CDD:409355"
     Region          844..862
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409355"
     Region          844..852
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409355"
     Region          860..863
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409355"
     Region          863..881
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409355"
     Region          881..886
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409355"
     Region          882..910
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409355"
     Region          890..896
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409355"
     Region          904..911
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409355"
     CDS             1..1005
                     /gene="CD101"
                     /coded_by="XM_054067970.1:69..3086"
                     /db_xref="GeneID:104056023"
ORIGIN      
        1 mglmcclaaa flllvllgls tgqrvvtvqk gplyrvrgsh itlwckvsgy qgpaeqnfqw
       61 siylpsaper evqiistanp sfpyaiytqr vrsqeiyver vqgdavllhi telqdqdage
      121 yechtpstde ryfgsysakt nlsvvadtls asmmpqilvh pegdmveltc evskstaqht
      181 hlsvgwyhll esgdrhteev ltlskdfvlr pgpsytqrfl sgdvrlnkig ntiyklsiga
      241 lelsdqgqly ceaaewiedp demwkdisrk qtgrtsltvi sqgrdlsvvi taaesslseg
      301 dtvklncmve aqksssrqfq vlwllnsmev arvdpygvli wkeeyeerak lgqlrafkqs
      361 ntvyvliiye vglkdngtyh csvsemktpg dfhiiqgnls ssiqvdvkpv errmqlsvst
      421 stphvvagda lillcqvqga tspvsvqwwh lppqhlgpqv lvatmerdgt lslgssyhnn
      481 rtrgslrlek ansgtftlvi pntldegdgg rygckvtewf kgkswteege ttvtvssvgf
      541 nlharlrsri atvrygqsfe ldcqvsasya leevpmsvvw lfqpslptgh qhelvrvlpn
      601 gtmawntaqa hfqrkallmk aatsfrmhlh samaadqgty qcvvevwrrn vlplgqsaat
      661 vrsnavgikv vlpesklqvs tkessveiag sadtaiecri vfaqnnsqfa vtwyllrhla
      721 datplqilra syssileyga efsspdkksr flsqrtssnv fwlkilsanp gdqgryycvv
      781 eewlwlvdsw yklgegasgr ttlefrlper elhlektnys isaregedvt lhcllrdacp
      841 pttrilaiwf qgkessnakp lvtlhrdgai eysweslsrr lylrrptagd fsltlhsvee
      901 gdagvyycqv qewqqqsegk nwvmqalahs gytrlttipp estvlsrics sppllnfilf
      961 lplvlilllt laifcwyfkf rksknasite dqlmelqgag gvkkt
//
LOCUS       XP_053923950             958 aa            linear   VRT 09-MAR-2023
DEFINITION  immunoglobulin superfamily member 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053923950
VERSION     XP_053923950.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067975.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..958
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..958
                     /product="immunoglobulin superfamily member 2 isoform X2"
                     /calculated_mol_wt=107150
     Region          21..145
                     /region_name="V-set"
                     /note="Immunoglobulin V-set domain; pfam07686"
                     /db_xref="CDD:462230"
     Region          155..256
                     /region_name="IgV"
                     /note="Immunoglobulin variable domain (IgV); cd00099"
                     /db_xref="CDD:409355"
     Region          158..160
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409355"
     Region          164..172
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409355"
     Region          172..182
                     /region_name="CDR1"
                     /note="CDR1 [structural motif]"
                     /db_xref="CDD:409355"
     Site            order(182..183,185,254)
                     /site_type="other"
                     /note="antigen binding site [polypeptide binding]"
                     /db_xref="CDD:409355"
     Region          183..200
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409355"
     Region          183..189
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409355"
     Region          198..201
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409355"
     Region          201..219
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409355"
     Region          219..229
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409355"
     Region          220..253
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409355"
     Region          233..239
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409355"
     Region          247..254
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409355"
     Region          296..397
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          303..307
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409355"
     Region          320..324
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409355"
     Region          364..368
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409355"
     Region          378..383
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409355"
     Region          424..535
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          544..644
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          559..563
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409385"
     Region          577..581
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409385"
     Region          625..629
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409385"
     Region          639..644
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409385"
     Region          <697..736
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          714..718
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409355"
     Region          728..733
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409355"
     Region          773..871
                     /region_name="IgV"
                     /note="Immunoglobulin variable domain (IgV); cd00099"
                     /db_xref="CDD:409355"
     Region          774..776
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409355"
     Region          780..788
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409355"
     Region          788..796
                     /region_name="CDR1"
                     /note="CDR1 [structural motif]"
                     /db_xref="CDD:409355"
     Site            order(796..797,801,864)
                     /site_type="other"
                     /note="antigen binding site [polypeptide binding]"
                     /db_xref="CDD:409355"
     Region          797..815
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409355"
     Region          797..805
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409355"
     Region          813..816
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409355"
     Region          816..834
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409355"
     Region          834..839
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409355"
     Region          835..863
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409355"
     Region          843..849
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409355"
     Region          857..864
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409355"
     CDS             1..958
                     /gene="CD101"
                     /coded_by="XM_054067975.1:69..2945"
                     /db_xref="GeneID:104056023"
ORIGIN      
        1 mglmcclaaa flllvllgls tgqrvvtvqk gplyrvrgsh itlwckvsgy qgpaeqnfqw
       61 siylpsaper evqiistanp sfpyaiytqr vrsqeiyver vqgdavllhi telqdqdage
      121 yechtpstde ryfgsysakt nlsvvadtls asmmpqilvh pegdmveltc evskstaqht
      181 hlsvgwyhll esgdrhteev ltlskdfvlr pgpsytqrfl sgdvrlnkig ntiyklsiga
      241 lelsdqgqly ceaaewiedp demwkdisrk qtgrtsltvi sqgrdlsvvi taaesslseg
      301 dtvklncmve aqksssrqfq vlwllnsmev arvdpygvli wkeeyeerak lgqlrafkqs
      361 ntvyvliiye vglkdngtyh csvsemktpg dfhiiqgnls ssiqvdvkpv errmqlsvst
      421 stphvvagda lillcqvqga tspvsvqwwh lppqhlgpqv lvatmerdgt lslgssyhnn
      481 rtrgslrlek ansgtftlvi pntldegdgg rygckvtewf kgkswteege ttvtvssvgf
      541 nlharlrsri atvrygqsfe ldcqvsasya leevpmsvvw lfqpslptgh qhelvrvlpn
      601 gtmawntaqa hfqrkallmk aatsfrmhlh samaadqgty qcvvevwrrn vlplgqsaat
      661 vrsnavgikv vlpdatplqi lrasyssile ygaefsspdk ksrflsqrts snvfwlkils
      721 anpgdqgryy cvveewlwlv dswyklgega sgrttlefrl perelhlekt nysisarege
      781 dvtlhcllrd acppttrila iwfqgkessn akplvtlhrd gaieyswesl srrlylrrpt
      841 agdfsltlhs veegdagvyy cqvqewqqqs egknwvmqal ahsgytrltt ippestvlsr
      901 icssppllnf ilflplvlil lltlaifcwy fkfrksknas itedqlmelq gaggvkkt
//
LOCUS       XP_053923967             758 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: dual specificity
            tyrosine-phosphorylation-regulated kinase 1A [Cuculus canorus].
ACCESSION   XP_053923967
VERSION     XP_053923967.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054067992.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..758
                     /product="LOW QUALITY PROTEIN: dual specificity
                     tyrosine-phosphorylation-regulated kinase 1A"
                     /calculated_mol_wt=85042
     Region          142..478
                     /region_name="PKc_DYRK1"
                     /note="Catalytic domain of the protein kinase,
                     Dual-specificity tYrosine-phosphorylated and -Regulated
                     Kinase 1; cd14226"
                     /db_xref="CDD:271128"
     Site            order(159..163,167,180,182,196,216,232..235,238,240..241,
                     281,283,285..286,288,301,304,313,315..318,320,357)
                     /site_type="active"
                     /db_xref="CDD:271128"
     Site            order(159..163,167,180,182,216,232..235,238,281,283,
                     285..286,288,301)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:271128"
     Site            order(196,240,281,283,304,313,315..318,320,357)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:271128"
     Site            300..320
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:271128"
     CDS             1..758
                     /gene="DYRK1A"
                     /coded_by="XM_054067992.1:303..2579"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /db_xref="GeneID:104059257"
ORIGIN      
        1 mhtggetsac kpssvrlaps fsfhaaglqm agqmshshqq ysdrrqqnin dqqvsalsya
       61 dqiqqpltlt nqrrmpqtfr dpataplrkl svdliktykh inevyyakkk rrhqqgqgdd
      121 sshkkerkvy ndgydddnyd yivkngekwm dryeidslig kgsfgqvvka ydrveqewva
      181 ikiiknkkaf lnqaqievrl lelmnkhdte mkyyivhlkr hfmfrnhlcl vfemlsynly
      241 dllrntnfrg vslnltrkfa qqmctallfl atpelsiihc dlkpenillc npkrsaikiv
      301 dfgsscqlgq riyqyiqsrf yrspevllgm pydlaidmws lgcilvemht geplfsgane
      361 vdqmnkivev lgippthild qapkarkffe klpdgawnlk ktkdgkreyk ppgtrklhni
      421 lgvetggpgg rragesghtv adylkfkdli lrmldydpkt riqpyyalqh sffkktadeg
      481 tntsnsvsts pameqsqssg ttsstssssg gssgtsnsgr arsdpthqhr hsgghftaav
      541 qamdcethsp qvrqqfpppi gwtateaptq vtvenhpvqe ttfhvtpqqq nalhhhhgns
      601 shhhhhhhhh hhhhgqqalg srtrprvyns ptnssstqds mevghshhsm tslsssttss
      661 stsssstgnq gnqayqnrpv aantldfgqn gamdmnltvy snprqetgia ghptyqfsan
      721 tgpahymteg hlamrqgidr eespmtgvcv qqspvass
//
LOCUS       XP_053923980             386 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-citrylglutamate synthase B isoform X1 [Cuculus canorus].
ACCESSION   XP_053923980
VERSION     XP_053923980.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068005.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..386
                     /product="beta-citrylglutamate synthase B isoform X1"
                     /calculated_mol_wt=42418
     Region          8..303
                     /region_name="CPSase_L_D2"
                     /note="Carbamoyl-phosphate synthase L chain, ATP binding
                     domain; cl17255"
                     /db_xref="CDD:473076"
     CDS             1..386
                     /gene="RIMKLB"
                     /coded_by="XM_054068005.1:758..1918"
                     /db_xref="GeneID:104060632"
ORIGIN      
        1 mcssvaprlw fltdrrired ypqqeilral kakcceeeld fralvmdevv ltiedgnlgl
       61 rvngelitay pqvvvvrvpt pwvqsdsdit vlrhlekmgc rlmnrpqail ncvnkfwtfq
      121 elaghgvplp dtfsygghen fakmideaev lefpmvvknt rghrgkavfl ardkhhladl
      181 shlirhdapy lfqkyvkesh gkdvrvivvg grvvgtmlrc stdgrmqsnc slggigmmcs
      241 lseqgkqlav qvsnilgmdv cgidllmkdd gsfyvceana nvgfiafdka cnldvagiia
      301 dyaaslltpg rltrrmslls vvstasetse pelgppasaa vdnmsassss vdsdpetter
      361 elltklpgal fnmnqllane ikllve
//
LOCUS       XP_053923988             386 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-citrylglutamate synthase B isoform X1 [Cuculus canorus].
ACCESSION   XP_053923988
VERSION     XP_053923988.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068013.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..386
                     /product="beta-citrylglutamate synthase B isoform X1"
                     /calculated_mol_wt=42418
     Region          8..303
                     /region_name="CPSase_L_D2"
                     /note="Carbamoyl-phosphate synthase L chain, ATP binding
                     domain; cl17255"
                     /db_xref="CDD:473076"
     CDS             1..386
                     /gene="RIMKLB"
                     /coded_by="XM_054068013.1:696..1856"
                     /db_xref="GeneID:104060632"
ORIGIN      
        1 mcssvaprlw fltdrrired ypqqeilral kakcceeeld fralvmdevv ltiedgnlgl
       61 rvngelitay pqvvvvrvpt pwvqsdsdit vlrhlekmgc rlmnrpqail ncvnkfwtfq
      121 elaghgvplp dtfsygghen fakmideaev lefpmvvknt rghrgkavfl ardkhhladl
      181 shlirhdapy lfqkyvkesh gkdvrvivvg grvvgtmlrc stdgrmqsnc slggigmmcs
      241 lseqgkqlav qvsnilgmdv cgidllmkdd gsfyvceana nvgfiafdka cnldvagiia
      301 dyaaslltpg rltrrmslls vvstasetse pelgppasaa vdnmsassss vdsdpetter
      361 elltklpgal fnmnqllane ikllve
//
LOCUS       XP_053924008             336 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-citrylglutamate synthase B isoform X2 [Cuculus canorus].
ACCESSION   XP_053924008
VERSION     XP_053924008.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068033.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..336
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..336
                     /product="beta-citrylglutamate synthase B isoform X2"
                     /calculated_mol_wt=36537
     Region          14..253
                     /region_name="CPSase_L_D2"
                     /note="Carbamoyl-phosphate synthase L chain, ATP binding
                     domain; cl17255"
                     /db_xref="CDD:473076"
     CDS             1..336
                     /gene="RIMKLB"
                     /coded_by="XM_054068033.1:16..1026"
                     /db_xref="GeneID:104060632"
ORIGIN      
        1 mdqlvicqgl rvngelitay pqvvvvrvpt pwvqsdsdit vlrhlekmgc rlmnrpqail
       61 ncvnkfwtfq elaghgvplp dtfsygghen fakmideaev lefpmvvknt rghrgkavfl
      121 ardkhhladl shlirhdapy lfqkyvkesh gkdvrvivvg grvvgtmlrc stdgrmqsnc
      181 slggigmmcs lseqgkqlav qvsnilgmdv cgidllmkdd gsfyvceana nvgfiafdka
      241 cnldvagiia dyaaslltpg rltrrmslls vvstasetse pelgppasaa vdnmsassss
      301 vdsdpetter elltklpgal fnmnqllane ikllve
//
LOCUS       XP_053924017             740 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase DCLK1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053924017
VERSION     XP_053924017.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068042.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..740
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..740
                     /product="serine/threonine-protein kinase DCLK1 isoform
                     X1"
                     /calculated_mol_wt=82108
     Region          55..143
                     /region_name="DCX1_DCLK1"
                     /note="Dublecortin-like domain 1 found in
                     doublecortin-like kinase 1 (DCLK1); cd17140"
                     /db_xref="CDD:340660"
     Site            order(55,66..68,74,79..80,82,90,98..100,102..103,106,133)
                     /site_type="other"
                     /note="putative tubulin binding site [polypeptide
                     binding]"
                     /db_xref="CDD:340660"
     Site            order(70,115)
                     /site_type="other"
                     /note="key conserved lysines"
                     /db_xref="CDD:340660"
     Region          182..265
                     /region_name="DCX2"
                     /note="Dublecortin-like domain 2; cd17069"
                     /db_xref="CDD:340589"
     Site            order(184,195..197,203,208..209,211,219,228..229,232,259)
                     /site_type="other"
                     /note="putative DCX-stabilized microtubules [polypeptide
                     binding]"
                     /db_xref="CDD:340589"
     Site            order(199,240)
                     /site_type="other"
                     /note="key conserved lysines"
                     /db_xref="CDD:340589"
     Region          383..650
                     /region_name="STKc_DCKL1"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Doublecortin-like kinase 1 (also called Doublecortin-like
                     and CAM kinase-like 1); cd14183"
                     /db_xref="CDD:271085"
     Site            order(396..400,404,417,419,449,465..468,472,474,510..511,
                     513,515..516,518,532..533,536,548..552,554)
                     /site_type="active"
                     /db_xref="CDD:271085"
     Site            order(396..399,404,417,419,449,465..468,472,515..516,518,
                     532..533)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:271085"
     Site            order(400,472,474,510..511,513,515,536,548..552,554)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:271085"
     Site            532..552
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:271085"
     CDS             1..740
                     /gene="DCLK1"
                     /coded_by="XM_054068042.1:137..2359"
                     /db_xref="GeneID:104066119"
ORIGIN      
        1 msfgrdmele hfderdkaqr ygrgsrvngl pspthsahcs fyrtrtlqtl ssekkakkvr
       61 fyrngdryfk givyaispdr frsfeallad ltrtlsdnvn lpqgvrtiyt idgskkissl
      121 dqlvegesyv cgsiepfkkl eytknvnpnw svnvkttsts rsvpslatak ggtpeakenk
      181 dfirpklvti irsgvkprka vrillnkkta hsfeqvltdi tdaikldsgv vkrlytldgk
      241 qvmclqdffg dddifiacgp ekfryqddfl ldesecrvvk stsytkiast srrsttkspg
      301 psrrskspas tssvngtpgs qlstprsgks pspsptspgs lrkqrssqhs gsstslastk
      361 vcssmdendg paeevleegf qvpasiaery kvgrtigdgn faivkecier stgreyalki
      421 ikkskcrgke hmiqnevsil rrvkhpnivl lieemdmpte lylvmelvkg gdlfdaitst
      481 nkyterdasg mlynlasaik ylhslnivhr dikpenllvy ehqdgskslk lgdfglativ
      541 dgplytvcgt ptyvapeiia etgyglkvdi waagvityil lcgfppfrgs gddqevlfdq
      601 ilmgqvdfps pywdnvsdsa kelitmmlqv dvdlrfsalq vlehpwvndd glpenehqls
      661 vagkikkhfn tgpkpnstaa gvsviattal dkerqvfrrr rnqdvrgryk aqqappelns
      721 esedyspsss etvrspnspf
//
LOCUS       XP_053924027             729 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase DCLK1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053924027
VERSION     XP_053924027.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068052.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..729
                     /product="serine/threonine-protein kinase DCLK1 isoform
                     X2"
                     /calculated_mol_wt=80983
     Region          55..143
                     /region_name="DCX1_DCLK1"
                     /note="Dublecortin-like domain 1 found in
                     doublecortin-like kinase 1 (DCLK1); cd17140"
                     /db_xref="CDD:340660"
     Site            order(55,66..68,74,79..80,82,90,98..100,102..103,106,133)
                     /site_type="other"
                     /note="putative tubulin binding site [polypeptide
                     binding]"
                     /db_xref="CDD:340660"
     Site            order(70,115)
                     /site_type="other"
                     /note="key conserved lysines"
                     /db_xref="CDD:340660"
     Region          182..265
                     /region_name="DCX2"
                     /note="Dublecortin-like domain 2; cd17069"
                     /db_xref="CDD:340589"
     Site            order(184,195..197,203,208..209,211,219,228..229,232,259)
                     /site_type="other"
                     /note="putative DCX-stabilized microtubules [polypeptide
                     binding]"
                     /db_xref="CDD:340589"
     Site            order(199,240)
                     /site_type="other"
                     /note="key conserved lysines"
                     /db_xref="CDD:340589"
     Region          383..650
                     /region_name="STKc_DCKL1"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Doublecortin-like kinase 1 (also called Doublecortin-like
                     and CAM kinase-like 1); cd14183"
                     /db_xref="CDD:271085"
     Site            order(396..400,404,417,419,449,465..468,472,474,510..511,
                     513,515..516,518,532..533,536,548..552,554)
                     /site_type="active"
                     /db_xref="CDD:271085"
     Site            order(396..399,404,417,419,449,465..468,472,515..516,518,
                     532..533)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:271085"
     Site            order(400,472,474,510..511,513,515,536,548..552,554)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:271085"
     Site            532..552
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:271085"
     CDS             1..729
                     /gene="DCLK1"
                     /coded_by="XM_054068052.1:137..2326"
                     /db_xref="GeneID:104066119"
ORIGIN      
        1 msfgrdmele hfderdkaqr ygrgsrvngl pspthsahcs fyrtrtlqtl ssekkakkvr
       61 fyrngdryfk givyaispdr frsfeallad ltrtlsdnvn lpqgvrtiyt idgskkissl
      121 dqlvegesyv cgsiepfkkl eytknvnpnw svnvkttsts rsvpslatak ggtpeakenk
      181 dfirpklvti irsgvkprka vrillnkkta hsfeqvltdi tdaikldsgv vkrlytldgk
      241 qvmclqdffg dddifiacgp ekfryqddfl ldesecrvvk stsytkiast srrsttkspg
      301 psrrskspas tssvngtpgs qlstprsgks pspsptspgs lrkqrssqhs gsstslastk
      361 vcssmdendg paeevleegf qvpasiaery kvgrtigdgn faivkecier stgreyalki
      421 ikkskcrgke hmiqnevsil rrvkhpnivl lieemdmpte lylvmelvkg gdlfdaitst
      481 nkyterdasg mlynlasaik ylhslnivhr dikpenllvy ehqdgskslk lgdfglativ
      541 dgplytvcgt ptyvapeiia etgyglkvdi waagvityil lcgfppfrgs gddqevlfdq
      601 ilmgqvdfps pywdnvsdsa kelitmmlqv dvdlrfsalq vlehpwvndd glpenehqls
      661 vagkikkhfn tgpkpnstaa gvsvialdhg ftikrsgsld yyqqpgmywi rppllirrgr
      721 fsdedatrm
//
LOCUS       XP_053924034             740 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase DCLK1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053924034
VERSION     XP_053924034.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068059.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..740
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..740
                     /product="serine/threonine-protein kinase DCLK1 isoform
                     X1"
                     /calculated_mol_wt=82108
     Region          55..143
                     /region_name="DCX1_DCLK1"
                     /note="Dublecortin-like domain 1 found in
                     doublecortin-like kinase 1 (DCLK1); cd17140"
                     /db_xref="CDD:340660"
     Site            order(55,66..68,74,79..80,82,90,98..100,102..103,106,133)
                     /site_type="other"
                     /note="putative tubulin binding site [polypeptide
                     binding]"
                     /db_xref="CDD:340660"
     Site            order(70,115)
                     /site_type="other"
                     /note="key conserved lysines"
                     /db_xref="CDD:340660"
     Region          182..265
                     /region_name="DCX2"
                     /note="Dublecortin-like domain 2; cd17069"
                     /db_xref="CDD:340589"
     Site            order(184,195..197,203,208..209,211,219,228..229,232,259)
                     /site_type="other"
                     /note="putative DCX-stabilized microtubules [polypeptide
                     binding]"
                     /db_xref="CDD:340589"
     Site            order(199,240)
                     /site_type="other"
                     /note="key conserved lysines"
                     /db_xref="CDD:340589"
     Region          383..650
                     /region_name="STKc_DCKL1"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Doublecortin-like kinase 1 (also called Doublecortin-like
                     and CAM kinase-like 1); cd14183"
                     /db_xref="CDD:271085"
     Site            order(396..400,404,417,419,449,465..468,472,474,510..511,
                     513,515..516,518,532..533,536,548..552,554)
                     /site_type="active"
                     /db_xref="CDD:271085"
     Site            order(396..399,404,417,419,449,465..468,472,515..516,518,
                     532..533)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:271085"
     Site            order(400,472,474,510..511,513,515,536,548..552,554)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:271085"
     Site            532..552
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:271085"
     CDS             1..740
                     /gene="DCLK1"
                     /coded_by="XM_054068059.1:311..2533"
                     /db_xref="GeneID:104066119"
ORIGIN      
        1 msfgrdmele hfderdkaqr ygrgsrvngl pspthsahcs fyrtrtlqtl ssekkakkvr
       61 fyrngdryfk givyaispdr frsfeallad ltrtlsdnvn lpqgvrtiyt idgskkissl
      121 dqlvegesyv cgsiepfkkl eytknvnpnw svnvkttsts rsvpslatak ggtpeakenk
      181 dfirpklvti irsgvkprka vrillnkkta hsfeqvltdi tdaikldsgv vkrlytldgk
      241 qvmclqdffg dddifiacgp ekfryqddfl ldesecrvvk stsytkiast srrsttkspg
      301 psrrskspas tssvngtpgs qlstprsgks pspsptspgs lrkqrssqhs gsstslastk
      361 vcssmdendg paeevleegf qvpasiaery kvgrtigdgn faivkecier stgreyalki
      421 ikkskcrgke hmiqnevsil rrvkhpnivl lieemdmpte lylvmelvkg gdlfdaitst
      481 nkyterdasg mlynlasaik ylhslnivhr dikpenllvy ehqdgskslk lgdfglativ
      541 dgplytvcgt ptyvapeiia etgyglkvdi waagvityil lcgfppfrgs gddqevlfdq
      601 ilmgqvdfps pywdnvsdsa kelitmmlqv dvdlrfsalq vlehpwvndd glpenehqls
      661 vagkikkhfn tgpkpnstaa gvsviattal dkerqvfrrr rnqdvrgryk aqqappelns
      721 esedyspsss etvrspnspf
//
LOCUS       XP_053924044             363 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase DCLK1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053924044
VERSION     XP_053924044.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068069.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..363
                     /product="serine/threonine-protein kinase DCLK1 isoform
                     X3"
                     /calculated_mol_wt=40286
     Region          55..143
                     /region_name="DCX1_DCLK1"
                     /note="Dublecortin-like domain 1 found in
                     doublecortin-like kinase 1 (DCLK1); cd17140"
                     /db_xref="CDD:340660"
     Site            order(55,66..68,74,79..80,82,90,98..100,102..103,106,133)
                     /site_type="other"
                     /note="putative tubulin binding site [polypeptide
                     binding]"
                     /db_xref="CDD:340660"
     Site            order(70,115)
                     /site_type="other"
                     /note="key conserved lysines"
                     /db_xref="CDD:340660"
     Region          182..265
                     /region_name="DCX2"
                     /note="Dublecortin-like domain 2; cd17069"
                     /db_xref="CDD:340589"
     Site            order(184,195..197,203,208..209,211,219,228..229,232,259)
                     /site_type="other"
                     /note="putative DCX-stabilized microtubules [polypeptide
                     binding]"
                     /db_xref="CDD:340589"
     Site            order(199,240)
                     /site_type="other"
                     /note="key conserved lysines"
                     /db_xref="CDD:340589"
     CDS             1..363
                     /gene="DCLK1"
                     /coded_by="XM_054068069.1:137..1228"
                     /db_xref="GeneID:104066119"
ORIGIN      
        1 msfgrdmele hfderdkaqr ygrgsrvngl pspthsahcs fyrtrtlqtl ssekkakkvr
       61 fyrngdryfk givyaispdr frsfeallad ltrtlsdnvn lpqgvrtiyt idgskkissl
      121 dqlvegesyv cgsiepfkkl eytknvnpnw svnvkttsts rsvpslatak ggtpeakenk
      181 dfirpklvti irsgvkprka vrillnkkta hsfeqvltdi tdaikldsgv vkrlytldgk
      241 qvmclqdffg dddifiacgp ekfryqddfl ldesecrvvk stsytkiast srrsttkspg
      301 psrrskspas tssvngtpgs qlstprsgks pspsptspgs lrkqrdlyrp lssddmdsvg
      361 dsv
//
LOCUS       XP_009566978             433 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase DCLK1 isoform X4 [Cuculus canorus].
ACCESSION   XP_009566978
VERSION     XP_009566978.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568683.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..433
                     /product="serine/threonine-protein kinase DCLK1 isoform
                     X4"
                     /calculated_mol_wt=47623
     Region          76..343
                     /region_name="STKc_DCKL1"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Doublecortin-like kinase 1 (also called Doublecortin-like
                     and CAM kinase-like 1); cd14183"
                     /db_xref="CDD:271085"
     Site            order(89..93,97,110,112,142,158..161,165,167,203..204,206,
                     208..209,211,225..226,229,241..245,247)
                     /site_type="active"
                     /db_xref="CDD:271085"
     Site            order(89..92,97,110,112,142,158..161,165,208..209,211,
                     225..226)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:271085"
     Site            order(93,165,167,203..204,206,208,229,241..245,247)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:271085"
     Site            225..245
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:271085"
     CDS             1..433
                     /gene="DCLK1"
                     /coded_by="XM_009568683.2:276..1577"
                     /db_xref="GeneID:104066119"
ORIGIN      
        1 mlelievngt pgsqlstprs gkspspspts pgslrkqrss qhsgsstsla stkvcssmde
       61 ndgpaeevle egfqvpasia erykvgrtig dgnfaivkec ierstgreya lkiikkskcr
      121 gkehmiqnev silrrvkhpn ivllieemdm ptelylvmel vkggdlfdai tstnkyterd
      181 asgmlynlas aikylhslni vhrdikpenl lvyehqdgsk slklgdfgla tivdgplytv
      241 cgtptyvape iiaetgyglk vdiwaagvit yillcgfppf rgsgddqevl fdqilmgqvd
      301 fpspywdnvs dsakelitmm lqvdvdlrfs alqvlehpwv nddglpeneh qlsvagkikk
      361 hfntgpkpns taagvsviat taldkerqvf rrrrnqdvrg rykaqqappe lnsesedysp
      421 sssetvrspn spf
//
LOCUS       XP_053924074            1984 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger C3H1 domain-containing protein isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053924074
VERSION     XP_053924074.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068099.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1984
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1984
                     /product="zinc finger C3H1 domain-containing protein
                     isoform X1"
                     /calculated_mol_wt=225132
     Region          816..>999
                     /region_name="EnvC"
                     /note="Septal ring factor EnvC, activator of murein
                     hydrolases AmiA and AmiB [Cell cycle control, cell
                     division, chromosome partitioning]; COG4942"
                     /db_xref="CDD:443969"
     Region          1180..1200
                     /region_name="zf-C3H1"
                     /note="Putative zinc-finger domain; pfam10650"
                     /db_xref="CDD:431418"
     Region          1341..>1426
                     /region_name="NrfG"
                     /note="Cytochrome c-type biogenesis protein CcmH/NrfG
                     [Energy production and conversion, Posttranslational
                     modification, protein turnover, chaperones]; COG4235"
                     /db_xref="CDD:443378"
     Region          1354..1390
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          1358..1690
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          1395..1423
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          1599..1625
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(1601..1602,1605..1606,1608,1632,1635..1636,
                     1639..1640,1642..1643,1666,1669..1670,1673..1674,1677)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          1630..1660
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..1984
                     /gene="ZFC3H1"
                     /coded_by="XM_054068099.1:48..6002"
                     /db_xref="GeneID:104064016"
ORIGIN      
        1 maaaeaagaa atapaeaald psglspkeeg eledgeisdd dnsgfgpygg ggsergggpa
       61 ssrpysrrrp ppglrggfsl sssssgrpfp rprhqpppem gpphgrggyr pkdsfrpapr
      121 lppgphaetg prlsfwersh naldrfrfrg rpyrgggrwd rsrggsdrgg nppgrppagg
      181 ggagfgsgqg wrepsprksk tfgrspsrkq nyssknensv eesfedlllk ykqiqlelec
      241 inkderlals nkeeneqggd kvdngdqatv endsittdav kevspeekip vigfqafqlk
      301 plrqklptpa ersrlkkvke gtkqpsqkpe vaesgqgaed keqtsgrkls ssdatsekkl
      361 ldeeeemsel elrllalqsa skkwqqkeqq vmkeskeklt ktksvtqkvk astkphstkk
      421 psttakqalr kqtpskkmqq qreqdrrqke edlrkqeeee errkreeeir kirdlsnqee
      481 qynrfmklvg gkrrsrsrss dtdlrwsldk qptdsaggiy qydnydevam dtdsetnspa
      541 sspvqppffe cpigyfpppl ppislplppp ippvpslnql yveamscvsl eptpplpplp
      601 peepeqppkp pfadeeeeee mllreellks lankrafrse etssnsgpps ppvpdnvqsv
      661 prsnlsavsi ntvsqprvqn tkfvraprlp ravitlpkhk svvvtlndsd dsesdgepsn
      721 stnsvfggle smikearrnv easkvkappk sekendpmrt pealpedkki eyrllkeeia
      781 srekqrliks dplrnnsspa nsdcevdgig riavvtkqvt eaeaklkknr lllmkdesvl
      841 khllqqeakk renvriaenk inklaeqlqa tekilnankm flkklqeqih rvqqrvtvkk
      901 alalkygeel arakavaske igkrkleqdh lgpskmlkld nspasspkkh saelialekk
      961 rlqqleyeya lkiqklkear alqtkeqani ashaeeesef tlpqpslhdl tqdklsldse
     1021 enyfddevls nanrerrrsf resnsftkpn lkhidtpkqe ainklskkas eepelflgln
     1081 vdelkklyak adslkellvk stalvvpked mlcgqeisvd vnvvtsqnkq tevkpfpfgp
     1141 yhspllvfks yrfspyfrtk eklylssity snmiepkqcf crfdltgtcn dddcqwqhmk
     1201 dctlsrkqlf qdilsynlel igcsekstde eistatekyv eklfginrdr msvdqmavll
     1261 asninesksh tppfttwkdk rkwrpkyrrk plldssssee eqfigpikya hpteykkrvp
     1321 aldavvtpdd vryftsetdd ianleasvqe npcnvqlwik laykylnqne gsssecldst
     1381 lnvlaralen nkenpeiwch ylrlfskrgt keeiqemcet aveyapcyqi wwtflnlens
     1441 fdgkdyvcgr mlqflmevtg aeenpnlvsf qlletllyrv hlslftgrhq nalvllqnal
     1501 ksanekilse rltvsdrcla wlayihltef gilpvkfydp snaspsrivn kepflmpwqt
     1561 vqdvktdpdm llvmfedavk tctdesleae kriaicfply rnmiallkll erwesatetc
     1621 rsllehspnn cqlleslatl ylqmeqsdka yevwiaafek npqnaeifyh lckflvsqer
     1681 sssilpllqd fvaaffentc qehnpmdllr yllnfpmpie ftsplykehl tddvvnqqip
     1741 ylwqiyclcq sihasvgeal dayeaalgav mqqetvqniw ldylvfinsk vvgsnnkvqe
     1801 fklftdlvnr clvtvptryp ipfstadywt nyefhnkvil fylscipksq hsktlerfcs
     1861 tmpanpglal rlllrywees nvqilklqak mftyniptcl aiwkiaiaae cflmgqrevh
     1921 hlyqralqkl plcaslwkdq llfeasgggk tdnlrklvsk cqevgvslde llnlntyrte
     1981 sknh
//
LOCUS       XP_053924082            1983 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger C3H1 domain-containing protein isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053924082
VERSION     XP_053924082.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068107.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1983
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1983
                     /product="zinc finger C3H1 domain-containing protein
                     isoform X2"
                     /calculated_mol_wt=225004
     Region          815..>998
                     /region_name="EnvC"
                     /note="Septal ring factor EnvC, activator of murein
                     hydrolases AmiA and AmiB [Cell cycle control, cell
                     division, chromosome partitioning]; COG4942"
                     /db_xref="CDD:443969"
     Region          1179..1199
                     /region_name="zf-C3H1"
                     /note="Putative zinc-finger domain; pfam10650"
                     /db_xref="CDD:431418"
     Region          1340..>1425
                     /region_name="NrfG"
                     /note="Cytochrome c-type biogenesis protein CcmH/NrfG
                     [Energy production and conversion, Posttranslational
                     modification, protein turnover, chaperones]; COG4235"
                     /db_xref="CDD:443378"
     Region          1353..1389
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          1357..1689
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          1394..1422
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          1598..1624
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(1600..1601,1604..1605,1607,1631,1634..1635,
                     1638..1639,1641..1642,1665,1668..1669,1672..1673,1676)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          1629..1659
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..1983
                     /gene="ZFC3H1"
                     /coded_by="XM_054068107.1:80..6031"
                     /db_xref="GeneID:104064016"
ORIGIN      
        1 maaaeaagaa atapaeaald psglspkeeg eledgeisdd dnsgfgpygg ggsergggpa
       61 ssrpysrrrp ppglrggfsl sssssgrpfp rprhqpppem gpphgrggyr pkdsfrpapr
      121 lppgphaetg prlsfwersh naldrfrfrg rpyrgggrwd rsrggsdrgg nppgrppagg
      181 ggagfgsgqg wrepsprksk tfgrspsrkq nyssknensv eesfedlllk ykqiqlelec
      241 inkderlals nkeeneqggd kvdngdqatv endsittdav kevspeekip vigfqafqlk
      301 plrqklptpa ersrlkkvke gtkqpsqkpe vaesgqgaed keqtsgrkls ssdatsekll
      361 deeeemsele lrllalqsas kkwqqkeqqv mkeskekltk tksvtqkvka stkphstkkp
      421 sttakqalrk qtpskkmqqq reqdrrqkee dlrkqeeeee rrkreeeirk irdlsnqeeq
      481 ynrfmklvgg krrsrsrssd tdlrwsldkq ptdsaggiyq ydnydevamd tdsetnspas
      541 spvqppffec pigyfppplp pislplpppi ppvpslnqly veamscvsle ptpplpplpp
      601 eepeqppkpp fadeeeeeem llreellksl ankrafrsee tssnsgppsp pvpdnvqsvp
      661 rsnlsavsin tvsqprvqnt kfvraprlpr avitlpkhks vvvtlndsdd sesdgepsns
      721 tnsvfggles mikearrnve askvkappks ekendpmrtp ealpedkkie yrllkeeias
      781 rekqrliksd plrnnsspan sdcevdgigr iavvtkqvte aeaklkknrl llmkdesvlk
      841 hllqqeakkr envriaenki nklaeqlqat ekilnankmf lkklqeqihr vqqrvtvkka
      901 lalkygeela rakavaskei gkrkleqdhl gpskmlkldn spasspkkhs aelialekkr
      961 lqqleyeyal kiqklkeara lqtkeqania shaeeeseft lpqpslhdlt qdklsldsee
     1021 nyfddevlsn anrerrrsfr esnsftkpnl khidtpkqea inklskkase epelflglnv
     1081 delkklyaka dslkellvks talvvpkedm lcgqeisvdv nvvtsqnkqt evkpfpfgpy
     1141 hspllvfksy rfspyfrtke klylssitys nmiepkqcfc rfdltgtcnd ddcqwqhmkd
     1201 ctlsrkqlfq dilsynleli gcsekstdee istatekyve klfginrdrm svdqmavlla
     1261 sninesksht ppfttwkdkr kwrpkyrrkp lldsssseee qfigpikyah pteykkrvpa
     1321 ldavvtpddv ryftsetddi anleasvqen pcnvqlwikl aykylnqneg sssecldstl
     1381 nvlaralenn kenpeiwchy lrlfskrgtk eeiqemceta veyapcyqiw wtflnlensf
     1441 dgkdyvcgrm lqflmevtga eenpnlvsfq lletllyrvh lslftgrhqn alvllqnalk
     1501 sanekilser ltvsdrclaw layihltefg ilpvkfydps naspsrivnk epflmpwqtv
     1561 qdvktdpdml lvmfedavkt ctdesleaek riaicfplyr nmiallklle rwesatetcr
     1621 sllehspnnc qlleslatly lqmeqsdkay evwiaafekn pqnaeifyhl ckflvsqers
     1681 ssilpllqdf vaaffentcq ehnpmdllry llnfpmpief tsplykehlt ddvvnqqipy
     1741 lwqiyclcqs ihasvgeald ayeaalgavm qqetvqniwl dylvfinskv vgsnnkvqef
     1801 klftdlvnrc lvtvptrypi pfstadywtn yefhnkvilf ylscipksqh sktlerfcst
     1861 mpanpglalr lllryweesn vqilklqakm ftyniptcla iwkiaiaaec flmgqrevhh
     1921 lyqralqklp lcaslwkdql lfeasgggkt dnlrklvskc qevgvsldel lnlntyrtes
     1981 knh
//
LOCUS       XP_053924089            1982 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger C3H1 domain-containing protein isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053924089
VERSION     XP_053924089.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068114.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1982
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1982
                     /product="zinc finger C3H1 domain-containing protein
                     isoform X3"
                     /calculated_mol_wt=225004
     Region          814..>997
                     /region_name="EnvC"
                     /note="Septal ring factor EnvC, activator of murein
                     hydrolases AmiA and AmiB [Cell cycle control, cell
                     division, chromosome partitioning]; COG4942"
                     /db_xref="CDD:443969"
     Region          1178..1198
                     /region_name="zf-C3H1"
                     /note="Putative zinc-finger domain; pfam10650"
                     /db_xref="CDD:431418"
     Region          1339..>1424
                     /region_name="NrfG"
                     /note="Cytochrome c-type biogenesis protein CcmH/NrfG
                     [Energy production and conversion, Posttranslational
                     modification, protein turnover, chaperones]; COG4235"
                     /db_xref="CDD:443378"
     Region          1352..1388
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          1356..1688
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          1393..1421
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          1597..1623
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(1599..1600,1603..1604,1606,1630,1633..1634,
                     1637..1638,1640..1641,1664,1667..1668,1671..1672,1675)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          1628..1658
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..1982
                     /gene="ZFC3H1"
                     /coded_by="XM_054068114.1:80..6028"
                     /db_xref="GeneID:104064016"
ORIGIN      
        1 maaaeaagaa atapaeaald psglspkeeg eledgeisdd dnsgfgpygg ggsergggpa
       61 ssrpysrrrp ppglrggfsl sssssgrpfp rprhqpppem gpphgrggyr pkdsfrpapr
      121 lppgphaetg prlsfwersh naldrfrfrg rpyrgggrwd rsrggsdrgg nppgrppagg
      181 ggagfgsgqg wrepsprksk tfgrspsrkq nyssknensv eesfedlllk ykqiqlelec
      241 inkderlals nkeeneqggd kvdngdqatv endsittdav kevspeekip vigfqafqlk
      301 plrqklptpa ersrlkkvke gtkqpsqkpe vaesgqedke qtsgrklsss datsekklld
      361 eeeemselel rllalqsask kwqqkeqqvm keskekltkt ksvtqkvkas tkphstkkps
      421 ttakqalrkq tpskkmqqqr eqdrrqkeed lrkqeeeeer rkreeeirki rdlsnqeeqy
      481 nrfmklvggk rrsrsrssdt dlrwsldkqp tdsaggiyqy dnydevamdt dsetnspass
      541 pvqppffecp igyfppplpp islplpppip pvpslnqlyv eamscvslep tpplpplppe
      601 epeqppkppf adeeeeeeml lreellksla nkrafrseet ssnsgppspp vpdnvqsvpr
      661 snlsavsint vsqprvqntk fvraprlpra vitlpkhksv vvtlndsdds esdgepsnst
      721 nsvfgglesm ikearrnvea skvkappkse kendpmrtpe alpedkkiey rllkeeiasr
      781 ekqrliksdp lrnnsspans dcevdgigri avvtkqvtea eaklkknrll lmkdesvlkh
      841 llqqeakkre nvriaenkin klaeqlqate kilnankmfl kklqeqihrv qqrvtvkkal
      901 alkygeelar akavaskeig krkleqdhlg pskmlkldns passpkkhsa elialekkrl
      961 qqleyeyalk iqklkearal qtkeqanias haeeeseftl pqpslhdltq dklsldseen
     1021 yfddevlsna nrerrrsfre snsftkpnlk hidtpkqeai nklskkasee pelflglnvd
     1081 elkklyakad slkellvkst alvvpkedml cgqeisvdvn vvtsqnkqte vkpfpfgpyh
     1141 spllvfksyr fspyfrtkek lylssitysn miepkqcfcr fdltgtcndd dcqwqhmkdc
     1201 tlsrkqlfqd ilsynlelig csekstdeei statekyvek lfginrdrms vdqmavllas
     1261 nineskshtp pfttwkdkrk wrpkyrrkpl ldsssseeeq figpikyahp teykkrvpal
     1321 davvtpddvr yftsetddia nleasvqenp cnvqlwikla ykylnqnegs ssecldstln
     1381 vlaralennk enpeiwchyl rlfskrgtke eiqemcetav eyapcyqiww tflnlensfd
     1441 gkdyvcgrml qflmevtgae enpnlvsfql letllyrvhl slftgrhqna lvllqnalks
     1501 anekilserl tvsdrclawl ayihltefgi lpvkfydpsn aspsrivnke pflmpwqtvq
     1561 dvktdpdmll vmfedavktc tdesleaekr iaicfplyrn miallkller wesatetcrs
     1621 llehspnncq lleslatlyl qmeqsdkaye vwiaafeknp qnaeifyhlc kflvsqerss
     1681 silpllqdfv aaffentcqe hnpmdllryl lnfpmpieft splykehltd dvvnqqipyl
     1741 wqiyclcqsi hasvgealda yeaalgavmq qetvqniwld ylvfinskvv gsnnkvqefk
     1801 lftdlvnrcl vtvptrypip fstadywtny efhnkvilfy lscipksqhs ktlerfcstm
     1861 panpglalrl llryweesnv qilklqakmf tyniptclai wkiaiaaecf lmgqrevhhl
     1921 yqralqklpl caslwkdqll feasgggktd nlrklvskcq evgvsldell nlntyrtesk
     1981 nh
//
LOCUS       XP_053924095            1981 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger C3H1 domain-containing protein isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053924095
VERSION     XP_053924095.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068120.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1981
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1981
                     /product="zinc finger C3H1 domain-containing protein
                     isoform X4"
                     /calculated_mol_wt=224876
     Region          813..>996
                     /region_name="EnvC"
                     /note="Septal ring factor EnvC, activator of murein
                     hydrolases AmiA and AmiB [Cell cycle control, cell
                     division, chromosome partitioning]; COG4942"
                     /db_xref="CDD:443969"
     Region          1177..1197
                     /region_name="zf-C3H1"
                     /note="Putative zinc-finger domain; pfam10650"
                     /db_xref="CDD:431418"
     Region          1338..>1423
                     /region_name="NrfG"
                     /note="Cytochrome c-type biogenesis protein CcmH/NrfG
                     [Energy production and conversion, Posttranslational
                     modification, protein turnover, chaperones]; COG4235"
                     /db_xref="CDD:443378"
     Region          1351..1387
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          1355..1687
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          1392..1420
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          1596..1622
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(1598..1599,1602..1603,1605,1629,1632..1633,
                     1636..1637,1639..1640,1663,1666..1667,1670..1671,1674)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          1627..1657
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..1981
                     /gene="ZFC3H1"
                     /coded_by="XM_054068120.1:80..6025"
                     /db_xref="GeneID:104064016"
ORIGIN      
        1 maaaeaagaa atapaeaald psglspkeeg eledgeisdd dnsgfgpygg ggsergggpa
       61 ssrpysrrrp ppglrggfsl sssssgrpfp rprhqpppem gpphgrggyr pkdsfrpapr
      121 lppgphaetg prlsfwersh naldrfrfrg rpyrgggrwd rsrggsdrgg nppgrppagg
      181 ggagfgsgqg wrepsprksk tfgrspsrkq nyssknensv eesfedlllk ykqiqlelec
      241 inkderlals nkeeneqggd kvdngdqatv endsittdav kevspeekip vigfqafqlk
      301 plrqklptpa ersrlkkvke gtkqpsqkpe vaesgqedke qtsgrklsss datsekllde
      361 eeemselelr llalqsaskk wqqkeqqvmk eskekltktk svtqkvkast kphstkkpst
      421 takqalrkqt pskkmqqqre qdrrqkeedl rkqeeeeerr kreeeirkir dlsnqeeqyn
      481 rfmklvggkr rsrsrssdtd lrwsldkqpt dsaggiyqyd nydevamdtd setnspassp
      541 vqppffecpi gyfppplppi slplpppipp vpslnqlyve amscvslept pplpplppee
      601 peqppkppfa deeeeeemll reellkslan krafrseets snsgppsppv pdnvqsvprs
      661 nlsavsintv sqprvqntkf vraprlprav itlpkhksvv vtlndsddse sdgepsnstn
      721 svfgglesmi kearrnveas kvkappksek endpmrtpea lpedkkieyr llkeeiasre
      781 kqrliksdpl rnnsspansd cevdgigria vvtkqvteae aklkknrlll mkdesvlkhl
      841 lqqeakkren vriaenkink laeqlqatek ilnankmflk klqeqihrvq qrvtvkkala
      901 lkygeelara kavaskeigk rkleqdhlgp skmlkldnsp asspkkhsae lialekkrlq
      961 qleyeyalki qklkearalq tkeqaniash aeeeseftlp qpslhdltqd klsldseeny
     1021 fddevlsnan rerrrsfres nsftkpnlkh idtpkqeain klskkaseep elflglnvde
     1081 lkklyakads lkellvksta lvvpkedmlc gqeisvdvnv vtsqnkqtev kpfpfgpyhs
     1141 pllvfksyrf spyfrtkekl ylssitysnm iepkqcfcrf dltgtcnddd cqwqhmkdct
     1201 lsrkqlfqdi lsynleligc sekstdeeis tatekyvekl fginrdrmsv dqmavllasn
     1261 ineskshtpp fttwkdkrkw rpkyrrkpll dsssseeeqf igpikyahpt eykkrvpald
     1321 avvtpddvry ftsetddian leasvqenpc nvqlwiklay kylnqnegss secldstlnv
     1381 laralennke npeiwchylr lfskrgtkee iqemcetave yapcyqiwwt flnlensfdg
     1441 kdyvcgrmlq flmevtgaee npnlvsfqll etllyrvhls lftgrhqnal vllqnalksa
     1501 nekilserlt vsdrclawla yihltefgil pvkfydpsna spsrivnkep flmpwqtvqd
     1561 vktdpdmllv mfedavktct desleaekri aicfplyrnm iallkllerw esatetcrsl
     1621 lehspnncql leslatlylq meqsdkayev wiaafeknpq naeifyhlck flvsqersss
     1681 ilpllqdfva affentcqeh npmdllryll nfpmpiefts plykehltdd vvnqqipylw
     1741 qiyclcqsih asvgealday eaalgavmqq etvqniwldy lvfinskvvg snnkvqefkl
     1801 ftdlvnrclv tvptrypipf stadywtnye fhnkvilfyl scipksqhsk tlerfcstmp
     1861 anpglalrll lryweesnvq ilklqakmft yniptclaiw kiaiaaecfl mgqrevhhly
     1921 qralqklplc aslwkdqllf easgggktdn lrklvskcqe vgvsldelln lntyrteskn
     1981 h
//
LOCUS       XP_053924105             245 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128852302 isoform X1 [Cuculus canorus].
ACCESSION   XP_053924105
VERSION     XP_053924105.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068130.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..245
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..245
                     /product="uncharacterized protein LOC128852302 isoform X1"
                     /calculated_mol_wt=27341
     CDS             1..245
                     /gene="LOC128852302"
                     /coded_by="XM_054068130.1:649..1386"
                     /db_xref="GeneID:128852302"
ORIGIN      
        1 mlhcskpalh psqsvtsliw kitlpvdvsl clvccpvilv mphaasnsig nwkksfgisl
       61 qshgwwcgtd garvtsrlfs gpckqsrpmt csimpfeeea ssvttkknqg vpfltigsss
      121 wlqrgvqhls ilqqdhfiic rareancrsm divissvifp qclgnlcstk qsyllqhdwv
      181 lekpevvfme aqyhtvwlse ssnltspsik ppfdwaeipw yftvsehhsv ekfqcclkkg
      241 srpss
//
LOCUS       XP_053924111             228 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128852302 isoform X2 [Cuculus canorus].
ACCESSION   XP_053924111
VERSION     XP_053924111.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068136.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..228
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..228
                     /product="uncharacterized protein LOC128852302 isoform X2"
                     /calculated_mol_wt=25554
     CDS             1..228
                     /gene="LOC128852302"
                     /coded_by="XM_054068136.1:304..990"
                     /db_xref="GeneID:128852302"
ORIGIN      
        1 miwkitlpvd vslclvccpv ilvmphaasn signwkksfg islqshgwwc gtdgarvtsr
       61 lfsgpckqsr pmtcsimpfe eeassvttkk nqgvpfltig ssswlqrgvq hlsilqqdhf
      121 iicrareanc rsmdivissv ifpqclgnlc stkqsyllqh dwvlekpevv fmeaqyhtvw
      181 lsessnltsp sikppfdwae ipwyftvseh hsvekfqccl kkgsrpss
//
LOCUS       XP_053924132             206 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128852309 [Cuculus canorus].
ACCESSION   XP_053924132
VERSION     XP_053924132.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068157.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..206
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..206
                     /product="uncharacterized protein LOC128852309"
                     /calculated_mol_wt=23122
     Region          1..203
                     /region_name="ps-ssRNAv_RdRp-like"
                     /note="conserved catalytic core domain of RNA-dependent
                     RNA polymerase (RdRp) from the positive-sense
                     single-stranded RNA [(+)ssRNA] viruses and closely related
                     viruses; cl40470"
                     /db_xref="CDD:477363"
     Site            order(59..64,118..119,145,147..148)
                     /site_type="active"
                     /db_xref="CDD:238827"
     Site            order(59..64,118,147)
                     /site_type="other"
                     /note="NTP binding site [chemical binding]"
                     /db_xref="CDD:238827"
     Site            119
                     /site_type="other"
                     /note="nucleic acid binding site [nucleotide binding]"
                     /db_xref="CDD:238827"
     CDS             1..206
                     /gene="LOC128852309"
                     /coded_by="XM_054068157.1:1520..2140"
                     /db_xref="GeneID:128852309"
ORIGIN      
        1 meqilleaml khredgevig gsqngftrgk scmtnlvafy ggvitavdmg kpmdviyldf
       61 skvfvmvsqn illsklkryg fdgwtvcwir nwldghiqrv vvngsmsrwr svtsgvhqgs
      121 vleqvlfnif indidsktec tlskfadhtk msgavaapeg rdvilvyldr lekwacvnlm
      181 rfnkakckvl hldwgkspel ellssk
//
LOCUS       XP_053924145             466 aa            linear   VRT 09-MAR-2023
DEFINITION  muscarinic acetylcholine receptor M2 [Cuculus canorus].
ACCESSION   XP_053924145
VERSION     XP_053924145.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068170.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..466
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..466
                     /product="muscarinic acetylcholine receptor M2"
                     /calculated_mol_wt=51275
     Region          27..451
                     /region_name="7tmA_mAChR_M2"
                     /note="muscarinic acetylcholine receptor subtype M2,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15297"
                     /db_xref="CDD:320424"
     Region          28..54
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320424"
     Region          61..87
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320424"
     Region          99..129
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320424"
     Site            order(106..107,110..111,158,184,190,193..194,197..198,400,
                     403..404,426,429..430)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:320424"
     Region          141..164
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320424"
     Region          186..215
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320424"
     Region          380..410
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320424"
     Region          419..444
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320424"
     CDS             1..466
                     /gene="CHRM2"
                     /coded_by="XM_054068170.1:486..1886"
                     /db_xref="GeneID:104058951"
ORIGIN      
        1 mnnstyinss tenvmalesp yktvevvfiv lvagslslvt iignilvmvs ikvnrhlqtv
       61 nnyflfslac adliigifsm nlytlytvig ywplgpvvcd lwlaldyvvs nasvmnllii
      121 sfdryfcvtk pltypvkrtt kmagmmiaaa wvlsfilwap ailfwqfivg grtvpdgdcy
      181 iqffsnaavt fgtaiaafyl pviimtvlyw qisrasksri kkgkkeaaqn qdtvspslvq
      241 gkivkpnnnn iptsgdgleh skiqngktsg etvtencvqg eekessndst svsvvasnmk
      301 edeaakdanq asasqghlkv enskltciri vtksqkgdcc aptnttveiv gtngeekqns
      361 varkivkmtk qpakkkppps rekkvtrtil aillafiitw tpynvmvlin sfctscipgt
      421 vwtigywlcy instinpacy alcnatfkkt fkhllmchyk nigatr
//
LOCUS       XP_009558838             466 aa            linear   VRT 09-MAR-2023
DEFINITION  muscarinic acetylcholine receptor M2 [Cuculus canorus].
ACCESSION   XP_009558838
VERSION     XP_009558838.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560543.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009558838.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..466
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..466
                     /product="muscarinic acetylcholine receptor M2"
                     /calculated_mol_wt=51275
     Region          27..451
                     /region_name="7tmA_mAChR_M2"
                     /note="muscarinic acetylcholine receptor subtype M2,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15297"
                     /db_xref="CDD:320424"
     Region          28..54
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320424"
     Region          61..87
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320424"
     Region          99..129
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320424"
     Site            order(106..107,110..111,158,184,190,193..194,197..198,400,
                     403..404,426,429..430)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:320424"
     Region          141..164
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320424"
     Region          186..215
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320424"
     Region          380..410
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320424"
     Region          419..444
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320424"
     CDS             1..466
                     /gene="CHRM2"
                     /coded_by="XM_009560543.2:122..1522"
                     /db_xref="GeneID:104058951"
ORIGIN      
        1 mnnstyinss tenvmalesp yktvevvfiv lvagslslvt iignilvmvs ikvnrhlqtv
       61 nnyflfslac adliigifsm nlytlytvig ywplgpvvcd lwlaldyvvs nasvmnllii
      121 sfdryfcvtk pltypvkrtt kmagmmiaaa wvlsfilwap ailfwqfivg grtvpdgdcy
      181 iqffsnaavt fgtaiaafyl pviimtvlyw qisrasksri kkgkkeaaqn qdtvspslvq
      241 gkivkpnnnn iptsgdgleh skiqngktsg etvtencvqg eekessndst svsvvasnmk
      301 edeaakdanq asasqghlkv enskltciri vtksqkgdcc aptnttveiv gtngeekqns
      361 varkivkmtk qpakkkppps rekkvtrtil aillafiitw tpynvmvlin sfctscipgt
      421 vwtigywlcy instinpacy alcnatfkkt fkhllmchyk nigatr
//
LOCUS       XP_053924154             466 aa            linear   VRT 09-MAR-2023
DEFINITION  muscarinic acetylcholine receptor M2 [Cuculus canorus].
ACCESSION   XP_053924154
VERSION     XP_053924154.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068179.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..466
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..466
                     /product="muscarinic acetylcholine receptor M2"
                     /calculated_mol_wt=51275
     Region          27..451
                     /region_name="7tmA_mAChR_M2"
                     /note="muscarinic acetylcholine receptor subtype M2,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15297"
                     /db_xref="CDD:320424"
     Region          28..54
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320424"
     Region          61..87
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320424"
     Region          99..129
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320424"
     Site            order(106..107,110..111,158,184,190,193..194,197..198,400,
                     403..404,426,429..430)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:320424"
     Region          141..164
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320424"
     Region          186..215
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320424"
     Region          380..410
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320424"
     Region          419..444
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320424"
     CDS             1..466
                     /gene="CHRM2"
                     /coded_by="XM_054068179.1:191..1591"
                     /db_xref="GeneID:104058951"
ORIGIN      
        1 mnnstyinss tenvmalesp yktvevvfiv lvagslslvt iignilvmvs ikvnrhlqtv
       61 nnyflfslac adliigifsm nlytlytvig ywplgpvvcd lwlaldyvvs nasvmnllii
      121 sfdryfcvtk pltypvkrtt kmagmmiaaa wvlsfilwap ailfwqfivg grtvpdgdcy
      181 iqffsnaavt fgtaiaafyl pviimtvlyw qisrasksri kkgkkeaaqn qdtvspslvq
      241 gkivkpnnnn iptsgdgleh skiqngktsg etvtencvqg eekessndst svsvvasnmk
      301 edeaakdanq asasqghlkv enskltciri vtksqkgdcc aptnttveiv gtngeekqns
      361 varkivkmtk qpakkkppps rekkvtrtil aillafiitw tpynvmvlin sfctscipgt
      421 vwtigywlcy instinpacy alcnatfkkt fkhllmchyk nigatr
//
LOCUS       XP_053924173             525 aa            linear   VRT 09-MAR-2023
DEFINITION  importin subunit alpha-4 [Cuculus canorus].
ACCESSION   XP_053924173
VERSION     XP_053924173.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068198.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..525
                     /product="importin subunit alpha-4"
                     /calculated_mol_wt=57968
     Region          11..525
                     /region_name="SRP1"
                     /note="Karyopherin (importin) alpha [Intracellular
                     trafficking and secretion]; COG5064"
                     /db_xref="CDD:227396"
     Region          77..102
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     Region          113..146
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     Site            order(137,141,145,179,183,187,222,226,230)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:293788"
     Region          154..190
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     Region          196..231
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     Region          248..273
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     Site            order(264,268,272,306,310,314,348,352,356)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:293788"
     Region          281..317
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     Region          323..357
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     Region          365..399
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     Region          408..442
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     CDS             1..525
                     /gene="KPNA3"
                     /coded_by="XM_054068198.1:63..1640"
                     /db_xref="GeneID:104066181"
ORIGIN      
        1 maenaaaaag lenhriksfk nkgrdvetmr rhrnevtiel rknkrdehll kkrnvpqees
       61 ledsdvdadf kaqnvtleai lqnatsdnpv iqlsavqaar kllssdrnpp iddliksgil
      121 pilvkclerd dnpslqfeaa waltniasgt svqtqavvqs navplflrll hsphqnvceq
      181 avwalgniig dgpqcrdyvi slgvvkplls finpsipitf lrnvtwvivn lcrnkdpppp
      241 metvqeilpa lcvliyhtdi nilvdtvwal syltdggneq iqmvidsgvv pflvpllshq
      301 evkvqtaalr avgnivtgtd eqtqvvlncd vlsyfpnllt hpkekinkea vwflsnitag
      361 nqqqvqavid aglipmiihq lakgdfgtqk eaawaisnlt isgrkdqvey lvqqnvippf
      421 cnllsvkdsq vvqvvldglk nilimagdea stiaeiieec gglekiealq qhenediykl
      481 afeiidqyfs gddidedpsl ipeatqggty nfdptanlqt kefnf
//
LOCUS       XP_053924181             223 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: ADP-ribosylation factor-like protein 11
            [Cuculus canorus].
ACCESSION   XP_053924181
VERSION     XP_053924181.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068206.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..223
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..223
                     /product="LOW QUALITY PROTEIN: ADP-ribosylation
                     factor-like protein 11"
                     /calculated_mol_wt=24019
     Region          15..173
                     /region_name="P-loop containing Nucleoside Triphosphate
                     Hydrolases"
                     /note="Members of the P-loop NTPase domain superfamily are
                     characterized by a conserved nucleotide phosphate-binding
                     motif, also referred to as the Walker A motif
                     (GxxxxGK[S/T], where x is any residue), and the Walker B
                     motif (hhhh[D/E], where h is a...; cl38936"
                     /db_xref="CDD:476819"
     Site            20..27
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206648"
     Site            order(22..28,67,123..124,126,156..158)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206648"
     Site            44
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206648"
     Site            48..50
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206648"
     Site            64..67
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206648"
     Site            order(66..67,83..84)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206648"
     Site            123..126
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206648"
     Site            156..158
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206648"
     Region          167..>223
                     /region_name="TNFRSF"
                     /note="Tumor necrosis factor receptor superfamily
                     (TNFRSF); cl22855"
                     /db_xref="CDD:473981"
     CDS             1..223
                     /gene="ARL11"
                     /coded_by="XM_054068206.1:1122..1793"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /db_xref="GeneID:104066182"
ORIGIN      
        1 mgkliskgqr krdarvvmlg lnfagkstll yklksgqave tcptvgfnve slqtpchisf
       61 tlwdvggqgs lraswhdyle dtnalifvld stdttrlpea aaaleevlsh psmtgipvll
      121 lankqevpga lapaeleerl qqgrlaghhw vlrgcsahtg eglqealavl gellrvlsra
      181 pcpksspsqg wwegsklqsk sepqedlccl qvchrgsqpp gtf
//
LOCUS       XP_053924192             850 aa            linear   VRT 09-MAR-2023
DEFINITION  A disintegrin and metalloproteinase with thrombospondin motifs 5
            [Cuculus canorus].
ACCESSION   XP_053924192
VERSION     XP_053924192.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068217.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..850
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..850
                     /product="A disintegrin and metalloproteinase with
                     thrombospondin motifs 5"
                     /calculated_mol_wt=93234
     Region          36..117
                     /region_name="Pep_M12B_propep"
                     /note="Reprolysin family propeptide; pfam01562"
                     /db_xref="CDD:460254"
     Region          187..391
                     /region_name="ZnMc_ADAMTS_like"
                     /note="Zinc-dependent metalloprotease, ADAMTS_like
                     subgroup. ADAMs (A Disintegrin And Metalloprotease) are
                     glycoproteins, which play roles in cell signaling, cell
                     fusion, and cell-cell interactions. This particular
                     subfamily represents domain architectures that...;
                     cd04273"
                     /db_xref="CDD:239801"
     Site            order(328..329,332,338)
                     /site_type="active"
                     /db_xref="CDD:239801"
     Region          405..472
                     /region_name="ADAMTS_CR_2"
                     /note="ADAMTS cysteine-rich domain 2; pfam17771"
                     /db_xref="CDD:465496"
     Region          488..540
                     /region_name="TSP1"
                     /note="Thrombospondin type 1 repeats; smart00209"
                     /db_xref="CDD:214559"
     Region          546..649
                     /region_name="ADAMTS_CR_3"
                     /note="ADAMTS cysteine-rich domain; pfam19236"
                     /db_xref="CDD:437068"
     Region          651..770
                     /region_name="ADAMTS_spacer1"
                     /note="ADAM-TS Spacer 1; pfam05986"
                     /db_xref="CDD:461796"
     Region          799..850
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     CDS             1..850
                     /gene="ADAMTS5"
                     /coded_by="XM_054068217.1:123..2675"
                     /db_xref="GeneID:104064799"
ORIGIN      
        1 mllgllwvll aarlppapaa ppprrlpppa asgavrrldr tyagggragy vlyaagrrfl
       61 ldleqsdgaa gerpgapssc yyrgtvdgnp rslavfnlcg gldgffavgs arytvrparr
      121 gggtriygeg apraphlfrr esfsfralpa rtscetgdpa aaaadgderr rrkrrrrrrs
      181 vsrarqvell lvadasmvrk ygkglqhyll tlssiasrly ahaslenhvr lavvkvvalg
      241 ekekglevnr naattlknfc kwqhqhnrld ddhdehydaa ilftredlcg hhscdtlgma
      301 dvgticsper scavieddgl haaftvahei ghllglshdd skfceenfgs medkrlmssi
      361 ltsidaskpw skctsatite ffddghgncl ldqprkqimg peelpgqtyd airqcklafg
      421 peytvcpgmd vcsrlwcavv rqgqmvcltk klpavegtpc gkgriclqgk cvdktkkkyy
      481 sasshgnwgs wgpwgqcsrt cgggvqfayr hcnnpaprnn gryctgkrai yrscnitpcp
      541 anaksfrqeq cearngyqsd skgvktfvew vpkyagvlpg dvckltcrak gtgyyvvfsq
      601 kvtdgtecrp ysnsvcirgk cirtgcdgii gsklqydkcg vcggdnssct kvmgtftkks
      661 kgytdvvkip egathikvrq fktkdqsrft aylalkkksg eylvngkymi stsetiidin
      721 gtvmnysgws hkddflhamg hsatkevliv qilatdptqp vdvrysffvp kkqgqmtnsv
      781 tssgsssskv tselmqprwv tgpwlscsrt cdtgwhtrtv qckdghgkla kgcllsqrps
      841 afkqcllkkc
//
LOCUS       XP_053924209             880 aa            linear   VRT 09-MAR-2023
DEFINITION  USP6 N-terminal-like protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053924209
VERSION     XP_053924209.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068234.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..880
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..880
                     /product="USP6 N-terminal-like protein isoform X1"
                     /calculated_mol_wt=100948
     Region          138..353
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     CDS             1..880
                     /gene="USP6NL"
                     /coded_by="XM_054068234.1:16..2658"
                     /db_xref="GeneID:104066317"
ORIGIN      
        1 mylaprhsfg tvkytlrllv vltscslaee sgsclllpfs gadaeqdaav klaqeraeiv
       61 akydrgrega qiepwedady rlykvtdrfg flhpeelpvh daviekqkhl eierttkwlk
      121 mlkswekykn sekfhrriyk giplqfrgqv wsllldvpkm keemkdfynk lkyqaqgssp
      181 dirqidldvn rtyrdhimfr drygvkqqsl fhvlaaysiy ntevgycqgm sqitalllmy
      241 mneedafwal vkllsgpkha mhgffipgfp kllrfqehhd kilkkflskl kqhldshdms
      301 tsfyttkwff qcfldrtpft lslriwdiyi legeriltam sytilklhrk hlmklqmeel
      361 veflqetlak dffyeddfvi dqlqnsisel krakldlpva gkddefpkkp lgqipsgpqp
      421 aalnstpmln gqnstgaqtt errerrpspg eepesspnnr kridslekkp slkqqrirpv
      481 etqnsmpkne vdtrrkpqpt eqdnsrqynn aaanqnsnat sntrrefvpr wnkpsdikii
      541 ektmklnaev kgtltnhsvs gpppspgeaq plnvkqkmrv ldadegkrgs nasqydnvpe
      601 vdnengnlve evlerarpqs prhvaysnsp rkqtekiptp lkipnnytft sqprspkyps
      661 qsdgpphgln vkqalpcysn ppnyhgnspk hvsnigntss vpphyhgnrt spsgrpygsf
      721 isvdyspdnl qmnsypasrq nplspaagqi evapvdayts nsrspsgikf iippvdylpe
      781 drkwpdaaym yrhepyrqpw ghdvnkshld nfqkyqhfqs ppfqdhslps vsvdspiryr
      841 tsptfeehgs pqyqysspsa qaqhyrnrnd glsmhesvll
//
LOCUS       XP_053924217             864 aa            linear   VRT 09-MAR-2023
DEFINITION  USP6 N-terminal-like protein isoform X2 [Cuculus canorus].
ACCESSION   XP_053924217
VERSION     XP_053924217.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068242.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..864
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..864
                     /product="USP6 N-terminal-like protein isoform X2"
                     /calculated_mol_wt=99311
     Region          122..337
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     CDS             1..864
                     /gene="USP6NL"
                     /coded_by="XM_054068242.1:292..2886"
                     /db_xref="GeneID:104066317"
ORIGIN      
        1 miqvlqivkd lvsparrrtd takkgadaeq daavklaqer aeivakydrg regaqiepwe
       61 dadyrlykvt drfgflhpee lpvhdaviek qkhleiertt kwlkmlkswe kyknsekfhr
      121 riykgiplqf rgqvwsllld vpkmkeemkd fynklkyqaq gsspdirqid ldvnrtyrdh
      181 imfrdrygvk qqslfhvlaa ysiyntevgy cqgmsqital llmymneeda fwalvkllsg
      241 pkhamhgffi pgfpkllrfq ehhdkilkkf lsklkqhlds hdmstsfytt kwffqcfldr
      301 tpftlslriw diyilegeri ltamsytilk lhrkhlmklq meelveflqe tlakdffyed
      361 dfvidqlqns iselkrakld lpvagkddef pkkplgqips gpqpaalnst pmlngqnstg
      421 aqtterrerr pspgeepess pnnrkridsl ekkpslkqqr irpvetqnsm pknevdtrrk
      481 pqpteqdnsr qynnaaanqn snatsntrre fvprwnkpsd ikiiektmkl naevkgtltn
      541 hsvsgpppsp geaqplnvkq kmrvldadeg krgsnasqyd nvpevdneng nlveevlera
      601 rpqsprhvay snsprkqtek iptplkipnn ytftsqprsp kypsqsdgpp hglnvkqalp
      661 cysnppnyhg nspkhvsnig ntssvpphyh gnrtspsgrp ygsfisvdys pdnlqmnsyp
      721 asrqnplspa agqievapvd aytsnsrsps gikfiippvd ylpedrkwpd aaymyrhepy
      781 rqpwghdvnk shldnfqkyq hfqsppfqdh slpsvsvdsp iryrtsptfe ehgspqyqys
      841 spsaqaqhyr nrndglsmhe svll
//
LOCUS       XP_053924223             859 aa            linear   VRT 09-MAR-2023
DEFINITION  USP6 N-terminal-like protein isoform X3 [Cuculus canorus].
ACCESSION   XP_053924223
VERSION     XP_053924223.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068248.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..859
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..859
                     /product="USP6 N-terminal-like protein isoform X3"
                     /calculated_mol_wt=98891
     Region          117..332
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     CDS             1..859
                     /gene="USP6NL"
                     /coded_by="XM_054068248.1:253..2832"
                     /db_xref="GeneID:104066317"
ORIGIN      
        1 mktkpelykd waenhnlktg adaeqdaavk laqeraeiva kydrgregaq iepwedadyr
       61 lykvtdrfgf lhpeelpvhd aviekqkhle ierttkwlkm lkswekykns ekfhrriykg
      121 iplqfrgqvw sllldvpkmk eemkdfynkl kyqaqgsspd irqidldvnr tyrdhimfrd
      181 rygvkqqslf hvlaaysiyn tevgycqgms qitalllmym needafwalv kllsgpkham
      241 hgffipgfpk llrfqehhdk ilkkflsklk qhldshdmst sfyttkwffq cfldrtpftl
      301 slriwdiyil egeriltams ytilklhrkh lmklqmeelv eflqetlakd ffyeddfvid
      361 qlqnsiselk rakldlpvag kddefpkkpl gqipsgpqpa alnstpmlng qnstgaqtte
      421 rrerrpspge epesspnnrk ridslekkps lkqqrirpve tqnsmpknev dtrrkpqpte
      481 qdnsrqynna aanqnsnats ntrrefvprw nkpsdikiie ktmklnaevk gtltnhsvsg
      541 pppspgeaqp lnvkqkmrvl dadegkrgsn asqydnvpev dnengnlvee vlerarpqsp
      601 rhvaysnspr kqtekiptpl kipnnytfts qprspkypsq sdgpphglnv kqalpcysnp
      661 pnyhgnspkh vsnigntssv pphyhgnrts psgrpygsfi svdyspdnlq mnsypasrqn
      721 plspaagqie vapvdaytsn srspsgikfi ippvdylped rkwpdaaymy rhepyrqpwg
      781 hdvnkshldn fqkyqhfqsp pfqdhslpsv svdspiryrt sptfeehgsp qyqysspsaq
      841 aqhyrnrndg lsmhesvll
//
LOCUS       XP_053924232             841 aa            linear   VRT 09-MAR-2023
DEFINITION  USP6 N-terminal-like protein isoform X4 [Cuculus canorus].
ACCESSION   XP_053924232
VERSION     XP_053924232.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068257.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..841
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..841
                     /product="USP6 N-terminal-like protein isoform X4"
                     /calculated_mol_wt=96723
     Region          99..314
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     CDS             1..841
                     /gene="USP6NL"
                     /coded_by="XM_054068257.1:222..2747"
                     /db_xref="GeneID:104066317"
ORIGIN      
        1 msadaeqdaa vklaqeraei vakydrgreg aqiepwedad yrlykvtdrf gflhpeelpv
       61 hdaviekqkh leierttkwl kmlkswekyk nsekfhrriy kgiplqfrgq vwsllldvpk
      121 mkeemkdfyn klkyqaqgss pdirqidldv nrtyrdhimf rdrygvkqqs lfhvlaaysi
      181 yntevgycqg msqitalllm ymneedafwa lvkllsgpkh amhgffipgf pkllrfqehh
      241 dkilkkflsk lkqhldshdm stsfyttkwf fqcfldrtpf tlslriwdiy ilegerilta
      301 msytilklhr khlmklqmee lveflqetla kdffyeddfv idqlqnsise lkrakldlpv
      361 agkddefpkk plgqipsgpq paalnstpml ngqnstgaqt terrerrpsp geepesspnn
      421 rkridslekk pslkqqrirp vetqnsmpkn evdtrrkpqp teqdnsrqyn naaanqnsna
      481 tsntrrefvp rwnkpsdiki iektmklnae vkgtltnhsv sgpppspgea qplnvkqkmr
      541 vldadegkrg snasqydnvp evdnengnlv eevlerarpq sprhvaysns prkqtekipt
      601 plkipnnytf tsqprspkyp sqsdgpphgl nvkqalpcys nppnyhgnsp khvsnignts
      661 svpphyhgnr tspsgrpygs fisvdyspdn lqmnsypasr qnplspaagq ievapvdayt
      721 snsrspsgik fiippvdylp edrkwpdaay myrhepyrqp wghdvnkshl dnfqkyqhfq
      781 sppfqdhslp svsvdspiry rtsptfeehg spqyqyssps aqaqhyrnrn dglsmhesvl
      841 l
//
LOCUS       XP_053924236             841 aa            linear   VRT 09-MAR-2023
DEFINITION  USP6 N-terminal-like protein isoform X4 [Cuculus canorus].
ACCESSION   XP_053924236
VERSION     XP_053924236.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068261.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..841
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..841
                     /product="USP6 N-terminal-like protein isoform X4"
                     /calculated_mol_wt=96723
     Region          99..314
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     CDS             1..841
                     /gene="USP6NL"
                     /coded_by="XM_054068261.1:118..2643"
                     /db_xref="GeneID:104066317"
ORIGIN      
        1 msadaeqdaa vklaqeraei vakydrgreg aqiepwedad yrlykvtdrf gflhpeelpv
       61 hdaviekqkh leierttkwl kmlkswekyk nsekfhrriy kgiplqfrgq vwsllldvpk
      121 mkeemkdfyn klkyqaqgss pdirqidldv nrtyrdhimf rdrygvkqqs lfhvlaaysi
      181 yntevgycqg msqitalllm ymneedafwa lvkllsgpkh amhgffipgf pkllrfqehh
      241 dkilkkflsk lkqhldshdm stsfyttkwf fqcfldrtpf tlslriwdiy ilegerilta
      301 msytilklhr khlmklqmee lveflqetla kdffyeddfv idqlqnsise lkrakldlpv
      361 agkddefpkk plgqipsgpq paalnstpml ngqnstgaqt terrerrpsp geepesspnn
      421 rkridslekk pslkqqrirp vetqnsmpkn evdtrrkpqp teqdnsrqyn naaanqnsna
      481 tsntrrefvp rwnkpsdiki iektmklnae vkgtltnhsv sgpppspgea qplnvkqkmr
      541 vldadegkrg snasqydnvp evdnengnlv eevlerarpq sprhvaysns prkqtekipt
      601 plkipnnytf tsqprspkyp sqsdgpphgl nvkqalpcys nppnyhgnsp khvsnignts
      661 svpphyhgnr tspsgrpygs fisvdyspdn lqmnsypasr qnplspaagq ievapvdayt
      721 snsrspsgik fiippvdylp edrkwpdaay myrhepyrqp wghdvnkshl dnfqkyqhfq
      781 sppfqdhslp svsvdspiry rtsptfeehg spqyqyssps aqaqhyrnrn dglsmhesvl
      841 l
//
LOCUS       XP_053924241             841 aa            linear   VRT 09-MAR-2023
DEFINITION  USP6 N-terminal-like protein isoform X4 [Cuculus canorus].
ACCESSION   XP_053924241
VERSION     XP_053924241.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068266.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..841
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..841
                     /product="USP6 N-terminal-like protein isoform X4"
                     /calculated_mol_wt=96723
     Region          99..314
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     CDS             1..841
                     /gene="USP6NL"
                     /coded_by="XM_054068266.1:106..2631"
                     /db_xref="GeneID:104066317"
ORIGIN      
        1 msadaeqdaa vklaqeraei vakydrgreg aqiepwedad yrlykvtdrf gflhpeelpv
       61 hdaviekqkh leierttkwl kmlkswekyk nsekfhrriy kgiplqfrgq vwsllldvpk
      121 mkeemkdfyn klkyqaqgss pdirqidldv nrtyrdhimf rdrygvkqqs lfhvlaaysi
      181 yntevgycqg msqitalllm ymneedafwa lvkllsgpkh amhgffipgf pkllrfqehh
      241 dkilkkflsk lkqhldshdm stsfyttkwf fqcfldrtpf tlslriwdiy ilegerilta
      301 msytilklhr khlmklqmee lveflqetla kdffyeddfv idqlqnsise lkrakldlpv
      361 agkddefpkk plgqipsgpq paalnstpml ngqnstgaqt terrerrpsp geepesspnn
      421 rkridslekk pslkqqrirp vetqnsmpkn evdtrrkpqp teqdnsrqyn naaanqnsna
      481 tsntrrefvp rwnkpsdiki iektmklnae vkgtltnhsv sgpppspgea qplnvkqkmr
      541 vldadegkrg snasqydnvp evdnengnlv eevlerarpq sprhvaysns prkqtekipt
      601 plkipnnytf tsqprspkyp sqsdgpphgl nvkqalpcys nppnyhgnsp khvsnignts
      661 svpphyhgnr tspsgrpygs fisvdyspdn lqmnsypasr qnplspaagq ievapvdayt
      721 snsrspsgik fiippvdylp edrkwpdaay myrhepyrqp wghdvnkshl dnfqkyqhfq
      781 sppfqdhslp svsvdspiry rtsptfeehg spqyqyssps aqaqhyrnrn dglsmhesvl
      841 l
//
LOCUS       XP_053924249             841 aa            linear   VRT 09-MAR-2023
DEFINITION  USP6 N-terminal-like protein isoform X4 [Cuculus canorus].
ACCESSION   XP_053924249
VERSION     XP_053924249.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068274.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..841
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..841
                     /product="USP6 N-terminal-like protein isoform X4"
                     /calculated_mol_wt=96723
     Region          99..314
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     CDS             1..841
                     /gene="USP6NL"
                     /coded_by="XM_054068274.1:105..2630"
                     /db_xref="GeneID:104066317"
ORIGIN      
        1 msadaeqdaa vklaqeraei vakydrgreg aqiepwedad yrlykvtdrf gflhpeelpv
       61 hdaviekqkh leierttkwl kmlkswekyk nsekfhrriy kgiplqfrgq vwsllldvpk
      121 mkeemkdfyn klkyqaqgss pdirqidldv nrtyrdhimf rdrygvkqqs lfhvlaaysi
      181 yntevgycqg msqitalllm ymneedafwa lvkllsgpkh amhgffipgf pkllrfqehh
      241 dkilkkflsk lkqhldshdm stsfyttkwf fqcfldrtpf tlslriwdiy ilegerilta
      301 msytilklhr khlmklqmee lveflqetla kdffyeddfv idqlqnsise lkrakldlpv
      361 agkddefpkk plgqipsgpq paalnstpml ngqnstgaqt terrerrpsp geepesspnn
      421 rkridslekk pslkqqrirp vetqnsmpkn evdtrrkpqp teqdnsrqyn naaanqnsna
      481 tsntrrefvp rwnkpsdiki iektmklnae vkgtltnhsv sgpppspgea qplnvkqkmr
      541 vldadegkrg snasqydnvp evdnengnlv eevlerarpq sprhvaysns prkqtekipt
      601 plkipnnytf tsqprspkyp sqsdgpphgl nvkqalpcys nppnyhgnsp khvsnignts
      661 svpphyhgnr tspsgrpygs fisvdyspdn lqmnsypasr qnplspaagq ievapvdayt
      721 snsrspsgik fiippvdylp edrkwpdaay myrhepyrqp wghdvnkshl dnfqkyqhfq
      781 sppfqdhslp svsvdspiry rtsptfeehg spqyqyssps aqaqhyrnrn dglsmhesvl
      841 l
//
LOCUS       XP_053924262             253 aa            linear   VRT 09-MAR-2023
DEFINITION  hemoglobin subunit rho isoform X1 [Cuculus canorus].
ACCESSION   XP_053924262
VERSION     XP_053924262.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068287.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..253
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..253
                     /product="hemoglobin subunit rho isoform X1"
                     /calculated_mol_wt=27960
     Region          114..252
                     /region_name="Hb-beta-like"
                     /note="Hemoglobin beta, gamma, delta, epsilon, and related
                     Hb subunits; cd08925"
                     /db_xref="CDD:381262"
     Site            order(137,140..141,144,147,204,206,209,215,218..219,
                     222..223,226,229..231,234..235,238)
                     /site_type="other"
                     /note="tetramer interface [polypeptide binding]"
                     /db_xref="CDD:381262"
     Site            order(138,148..149,170,173..174,177,195,199,203,205,
                     209..210,213,248)
                     /site_type="other"
                     /note="heme binding site [chemical binding]"
                     /db_xref="CDD:381262"
     CDS             1..253
                     /gene="LOC104055972"
                     /coded_by="XM_054068287.1:549..1310"
                     /db_xref="GeneID:104055972"
ORIGIN      
        1 msprtlwqgs etwpqiwtpq rdnsdglmll pspapmrsmd qygsvsgtdv lqplqvflgv
       61 rapelnpvgf glgihgmnpr gamtqpiptr lrkrgclqvp aklpatmvhw taeekqlias
      121 vwskvnveec gaealarlli vypwtqrffd nfgnlsspta iignpkvrah gkkvltsfge
      181 avknldnvkt tfsklselhc eklhvdpenf rllgdiliiv laahftkdft pacqatwqkl
      241 vgvvahalay kyh
//
LOCUS       XP_053924271             221 aa            linear   VRT 09-MAR-2023
DEFINITION  hemoglobin subunit rho isoform X2 [Cuculus canorus].
ACCESSION   XP_053924271
VERSION     XP_053924271.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068296.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..221
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..221
                     /product="hemoglobin subunit rho isoform X2"
                     /calculated_mol_wt=24180
     Region          82..220
                     /region_name="Hb-beta-like"
                     /note="Hemoglobin beta, gamma, delta, epsilon, and related
                     Hb subunits; cd08925"
                     /db_xref="CDD:381262"
     Site            order(105,108..109,112,115,172,174,177,183,186..187,
                     190..191,194,197..199,202..203,206)
                     /site_type="other"
                     /note="tetramer interface [polypeptide binding]"
                     /db_xref="CDD:381262"
     Site            order(106,116..117,138,141..142,145,163,167,171,173,
                     177..178,181,216)
                     /site_type="other"
                     /note="heme binding site [chemical binding]"
                     /db_xref="CDD:381262"
     CDS             1..221
                     /gene="LOC104055972"
                     /coded_by="XM_054068296.1:1230..1895"
                     /db_xref="GeneID:104055972"
ORIGIN      
        1 msggtlqtpr istlgpdvlq plqvflgvra pelnpvgfgl gihgmnprga mtqpiptrlr
       61 krgclqvpak lpatmvhwta eekqliasvw skvnveecga ealarllivy pwtqrffdnf
      121 gnlssptaii gnpkvrahgk kvltsfgeav knldnvkttf sklselhcek lhvdpenfrl
      181 lgdiliivla ahftkdftpa cqatwqklvg vvahalayky h
//
LOCUS       XP_053924277             168 aa            linear   VRT 09-MAR-2023
DEFINITION  hemoglobin subunit rho isoform X3 [Cuculus canorus].
ACCESSION   XP_053924277
VERSION     XP_053924277.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068302.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..168
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..168
                     /product="hemoglobin subunit rho isoform X3"
                     /calculated_mol_wt=18557
     Region          29..167
                     /region_name="Hb-beta-like"
                     /note="Hemoglobin beta, gamma, delta, epsilon, and related
                     Hb subunits; cd08925"
                     /db_xref="CDD:381262"
     Site            order(52,55..56,59,62,119,121,124,130,133..134,137..138,
                     141,144..146,149..150,153)
                     /site_type="other"
                     /note="tetramer interface [polypeptide binding]"
                     /db_xref="CDD:381262"
     Site            order(53,63..64,85,88..89,92,110,114,118,120,124..125,128,
                     163)
                     /site_type="other"
                     /note="heme binding site [chemical binding]"
                     /db_xref="CDD:381262"
     CDS             1..168
                     /gene="LOC104055972"
                     /coded_by="XM_054068302.1:193..699"
                     /db_xref="GeneID:104055972"
ORIGIN      
        1 mghclrvagg hrmvpaklpa tmvhwtaeek qliasvwskv nveecgaeal arllivypwt
       61 qrffdnfgnl ssptaiignp kvrahgkkvl tsfgeavknl dnvkttfskl selhceklhv
      121 dpenfrllgd iliivlaahf tkdftpacqa twqklvgvva halaykyh
//
LOCUS       XP_053924287             147 aa            linear   VRT 09-MAR-2023
DEFINITION  hemoglobin subunit rho isoform X4 [Cuculus canorus].
ACCESSION   XP_053924287
VERSION     XP_053924287.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068312.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..147
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..147
                     /product="hemoglobin subunit rho isoform X4"
                     /calculated_mol_wt=16372
     Region          8..146
                     /region_name="Hb-beta-like"
                     /note="Hemoglobin beta, gamma, delta, epsilon, and related
                     Hb subunits; cd08925"
                     /db_xref="CDD:381262"
     Site            order(31,34..35,38,41,98,100,103,109,112..113,116..117,
                     120,123..125,128..129,132)
                     /site_type="other"
                     /note="tetramer interface [polypeptide binding]"
                     /db_xref="CDD:381262"
     Site            order(32,42..43,64,67..68,71,89,93,97,99,103..104,107,142)
                     /site_type="other"
                     /note="heme binding site [chemical binding]"
                     /db_xref="CDD:381262"
     CDS             1..147
                     /gene="LOC104055972"
                     /coded_by="XM_054068312.1:1303..1746"
                     /db_xref="GeneID:104055972"
ORIGIN      
        1 mvhwtaeekq liasvwskvn veecgaeala rllivypwtq rffdnfgnls sptaiignpk
       61 vrahgkkvlt sfgeavknld nvkttfskls elhceklhvd penfrllgdi liivlaahft
      121 kdftpacqat wqklvgvvah alaykyh
//
LOCUS       XP_053924295             147 aa            linear   VRT 09-MAR-2023
DEFINITION  hemoglobin subunit rho isoform X4 [Cuculus canorus].
ACCESSION   XP_053924295
VERSION     XP_053924295.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068320.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..147
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..147
                     /product="hemoglobin subunit rho isoform X4"
                     /calculated_mol_wt=16372
     Region          8..146
                     /region_name="Hb-beta-like"
                     /note="Hemoglobin beta, gamma, delta, epsilon, and related
                     Hb subunits; cd08925"
                     /db_xref="CDD:381262"
     Site            order(31,34..35,38,41,98,100,103,109,112..113,116..117,
                     120,123..125,128..129,132)
                     /site_type="other"
                     /note="tetramer interface [polypeptide binding]"
                     /db_xref="CDD:381262"
     Site            order(32,42..43,64,67..68,71,89,93,97,99,103..104,107,142)
                     /site_type="other"
                     /note="heme binding site [chemical binding]"
                     /db_xref="CDD:381262"
     CDS             1..147
                     /gene="LOC104055972"
                     /coded_by="XM_054068320.1:130..573"
                     /db_xref="GeneID:104055972"
ORIGIN      
        1 mvhwtaeekq liasvwskvn veecgaeala rllivypwtq rffdnfgnls sptaiignpk
       61 vrahgkkvlt sfgeavknld nvkttfskls elhceklhvd penfrllgdi liivlaahft
      121 kdftpacqat wqklvgvvah alaykyh
//
LOCUS       XP_053924302             147 aa            linear   VRT 09-MAR-2023
DEFINITION  hemoglobin subunit rho isoform X4 [Cuculus canorus].
ACCESSION   XP_053924302
VERSION     XP_053924302.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068327.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..147
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..147
                     /product="hemoglobin subunit rho isoform X4"
                     /calculated_mol_wt=16372
     Region          8..146
                     /region_name="Hb-beta-like"
                     /note="Hemoglobin beta, gamma, delta, epsilon, and related
                     Hb subunits; cd08925"
                     /db_xref="CDD:381262"
     Site            order(31,34..35,38,41,98,100,103,109,112..113,116..117,
                     120,123..125,128..129,132)
                     /site_type="other"
                     /note="tetramer interface [polypeptide binding]"
                     /db_xref="CDD:381262"
     Site            order(32,42..43,64,67..68,71,89,93,97,99,103..104,107,142)
                     /site_type="other"
                     /note="heme binding site [chemical binding]"
                     /db_xref="CDD:381262"
     CDS             1..147
                     /gene="LOC104055972"
                     /coded_by="XM_054068327.1:718..1161"
                     /db_xref="GeneID:104055972"
ORIGIN      
        1 mvhwtaeekq liasvwskvn veecgaeala rllivypwtq rffdnfgnls sptaiignpk
       61 vrahgkkvlt sfgeavknld nvkttfskls elhceklhvd penfrllgdi liivlaahft
      121 kdftpacqat wqklvgvvah alaykyh
//
LOCUS       XP_009555459             147 aa            linear   VRT 09-MAR-2023
DEFINITION  hemoglobin subunit beta [Cuculus canorus].
ACCESSION   XP_009555459
VERSION     XP_009555459.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557164.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..147
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..147
                     /product="hemoglobin subunit beta"
                     /calculated_mol_wt=16216
     Region          8..146
                     /region_name="Hb-beta-like"
                     /note="Hemoglobin beta, gamma, delta, epsilon, and related
                     Hb subunits; cd08925"
                     /db_xref="CDD:381262"
     Site            order(31,34..35,38,41,98,100,103,109,112..113,116..117,
                     120,123..125,128..129,132)
                     /site_type="other"
                     /note="tetramer interface [polypeptide binding]"
                     /db_xref="CDD:381262"
     Site            order(32,42..43,64,67..68,71,89,93,97,99,103..104,107,142)
                     /site_type="other"
                     /note="heme binding site [chemical binding]"
                     /db_xref="CDD:381262"
     CDS             1..147
                     /gene="LOC104055963"
                     /coded_by="XM_009557164.2:89..532"
                     /db_xref="GeneID:104055963"
ORIGIN      
        1 mvhwtaeekq hitslwgkvn vadcgaeala rllvvypwtq rffssfgnls sptailgnpq
       61 vrahgkkvlt sfgeavknld nikatfaqls elhcdklhvd penfrllgdi liivlashfa
      121 keftpecqaa wqklvgavah alarkyh
//
LOCUS       XP_009555902             486 aa            linear   VRT 09-MAR-2023
DEFINITION  WASH complex subunit 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_009555902
VERSION     XP_009555902.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557607.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555902.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..486
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..486
                     /product="WASH complex subunit 1 isoform X1"
                     /calculated_mol_wt=52652
     Region          24..308
                     /region_name="WASH_WAHD"
                     /note="WAHD domain of WASH complex; pfam11945"
                     /db_xref="CDD:463408"
     CDS             1..486
                     /gene="WASHC1"
                     /coded_by="XM_009557607.2:1..1461"
                     /db_xref="GeneID:104056356"
ORIGIN      
        1 mtyllfplgt maavaqkhfl egqtysvpli qpdlcreeav qqvadalqyl qkvsgdifnr
       61 isqrveasra qlqaigervt laqakiekik gskkaikvfs sakypaperl qeyssifaga
      121 edpatqkwpr hkiqsrhrml dekalqeklk yfpvcvstki hqeddaeegl gslprnissl
      181 sslllfntte nlykkyvfld plagavtkth valeteteek lfdaplsitk rgqldrqvae
      241 nyfyvpdlgq vpeidvpsyl pdlpgiaadl mysadlgpgi apsapssaip elptfntesv
      301 epsqpdlqda elllpppppp pppppvlptt vppppplpep tapcepvrtv seersnavpa
      361 asvqgapkev vnpstgrasl lesirqaggi gkanlrsvke rklekkkqke qeqvratgqg
      421 gdlmsdlfnk lvlrrkgisg kgpgasgnpd apgspagafa rmsdsipplp ppqqpvgeed
      481 eddwet
//
LOCUS       XP_053924329             476 aa            linear   VRT 09-MAR-2023
DEFINITION  WASH complex subunit 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053924329
VERSION     XP_053924329.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068354.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..476
                     /product="WASH complex subunit 1 isoform X2"
                     /calculated_mol_wt=51515
     Region          14..298
                     /region_name="WASH_WAHD"
                     /note="WAHD domain of WASH complex; pfam11945"
                     /db_xref="CDD:463408"
     CDS             1..476
                     /gene="WASHC1"
                     /coded_by="XM_054068354.1:134..1564"
                     /db_xref="GeneID:104056356"
ORIGIN      
        1 maavaqkhfl egqtysvpli qpdlcreeav qqvadalqyl qkvsgdifnr isqrveasra
       61 qlqaigervt laqakiekik gskkaikvfs sakypaperl qeyssifaga edpatqkwpr
      121 hkiqsrhrml dekalqeklk yfpvcvstki hqeddaeegl gslprnissl sslllfntte
      181 nlykkyvfld plagavtkth valeteteek lfdaplsitk rgqldrqvae nyfyvpdlgq
      241 vpeidvpsyl pdlpgiaadl mysadlgpgi apsapssaip elptfntesv epsqpdlqda
      301 elllpppppp pppppvlptt vppppplpep tapcepvrtv seersnavpa asvqgapkev
      361 vnpstgrasl lesirqaggi gkanlrsvke rklekkkqke qeqvratgqg gdlmsdlfnk
      421 lvlrrkgisg kgpgasgnpd apgspagafa rmsdsipplp ppqqpvgeed eddwet
//
LOCUS       XP_053924336             476 aa            linear   VRT 09-MAR-2023
DEFINITION  WASH complex subunit 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053924336
VERSION     XP_053924336.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068361.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..476
                     /product="WASH complex subunit 1 isoform X2"
                     /calculated_mol_wt=51515
     Region          14..298
                     /region_name="WASH_WAHD"
                     /note="WAHD domain of WASH complex; pfam11945"
                     /db_xref="CDD:463408"
     CDS             1..476
                     /gene="WASHC1"
                     /coded_by="XM_054068361.1:120..1550"
                     /db_xref="GeneID:104056356"
ORIGIN      
        1 maavaqkhfl egqtysvpli qpdlcreeav qqvadalqyl qkvsgdifnr isqrveasra
       61 qlqaigervt laqakiekik gskkaikvfs sakypaperl qeyssifaga edpatqkwpr
      121 hkiqsrhrml dekalqeklk yfpvcvstki hqeddaeegl gslprnissl sslllfntte
      181 nlykkyvfld plagavtkth valeteteek lfdaplsitk rgqldrqvae nyfyvpdlgq
      241 vpeidvpsyl pdlpgiaadl mysadlgpgi apsapssaip elptfntesv epsqpdlqda
      301 elllpppppp pppppvlptt vppppplpep tapcepvrtv seersnavpa asvqgapkev
      361 vnpstgrasl lesirqaggi gkanlrsvke rklekkkqke qeqvratgqg gdlmsdlfnk
      421 lvlrrkgisg kgpgasgnpd apgspagafa rmsdsipplp ppqqpvgeed eddwet
//
LOCUS       XP_053924348             915 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-dependent DNA helicase DDX11 isoform X1 [Cuculus canorus].
ACCESSION   XP_053924348
VERSION     XP_053924348.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068373.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..915
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..915
                     /product="ATP-dependent DNA helicase DDX11 isoform X1"
                     /calculated_mol_wt=103690
     Region          25..>129
                     /region_name="P-loop containing Nucleoside Triphosphate
                     Hydrolases"
                     /note="Members of the P-loop NTPase domain superfamily are
                     characterized by a conserved nucleotide phosphate-binding
                     motif, also referred to as the Walker A motif
                     (GxxxxGK[S/T], where x is any residue), and the Walker B
                     motif (hhhh[D/E], where h is a...; cl38936"
                     /db_xref="CDD:476819"
     Region          <118..209
                     /region_name="Synaphin"
                     /note="Synaphin protein; pfam05835"
                     /db_xref="CDD:461755"
     Region          183..900
                     /region_name="rad3"
                     /note="DNA repair helicase (rad3); TIGR00604"
                     /db_xref="CDD:273169"
     CDS             1..915
                     /gene="DDX11"
                     /coded_by="XM_054068373.1:40..2787"
                     /db_xref="GeneID:104056355"
ORIGIN      
        1 mmegemkgem eggrfpfpya pyriqerfma alygaleagr vgifesptgt gkslslicga
       61 lswlrdfeek kqqeearlla ledsrqegkk emtsaapgcp etkdsagepd wvtafvqkke
      121 erdlvdrlke ekirrkkred rlekirhnvq lkyaakrkrs eedetkrlfq lskevlsega
      181 ggdvveqldh neeelilaey esdeekkvis gleeddddle eehvtkiyyc srthsqlsqf
      241 vrevqkspfg kdtrlvslgs rqnlcvneev rrlgalqlin drcmemqknk rekkndeene
      301 gkkrrvsrtv cpfysydqmq flrdevlvev kdieqlvalg retkacpyyg sryaipaaql
      361 vvlpyqmilh eptrsaagik lkdqiviide ahnlidtitc ihsaevsgsq lccahsqllq
      421 ymeryrkrlk aknlmyikqi lyllerfvav lggnvnqnps cqavsqkgtv lksindflfq
      481 sqidninlfk iqrycektli srklfgfver ygspvtavkt nkenqklagl qnflltlqqg
      541 sdkeasmvqs tpveaendql rtasplmqie gflsaltnan qdgrvilnrq gtvgqsslkf
      601 lllnpavhfa kvveecravi iaggtmqpva dfreqllsca gvdparivef scghvippen
      661 ilpiilcsgp snqqleftyq trdlpqmmde tgrilcnvcn vvpggvvcff psyeyekqvy
      721 ahwektgllt rlatkkkifq epkkanqveq vlveyakcik llvpllqrcs qaegqmtgal
      781 llsvvggkms eginfcddlg rcvimvgmpy pnikspelqe kmtwldktmp raagqapsrv
      841 lienlcmkav nqsigrairh qkdfasilll dhrysrpatf nklpqwirer tqvkptfgsa
      901 faelrkfhrg kadal
//
LOCUS       XP_053924353             914 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-dependent DNA helicase DDX11 isoform X2 [Cuculus canorus].
ACCESSION   XP_053924353
VERSION     XP_053924353.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068378.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..914
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..914
                     /product="ATP-dependent DNA helicase DDX11 isoform X2"
                     /calculated_mol_wt=103533
     Region          25..>129
                     /region_name="P-loop containing Nucleoside Triphosphate
                     Hydrolases"
                     /note="Members of the P-loop NTPase domain superfamily are
                     characterized by a conserved nucleotide phosphate-binding
                     motif, also referred to as the Walker A motif
                     (GxxxxGK[S/T], where x is any residue), and the Walker B
                     motif (hhhh[D/E], where h is a...; cl38936"
                     /db_xref="CDD:476819"
     Region          <118..209
                     /region_name="Synaphin"
                     /note="Synaphin protein; pfam05835"
                     /db_xref="CDD:461755"
     Region          183..899
                     /region_name="rad3"
                     /note="DNA repair helicase (rad3); TIGR00604"
                     /db_xref="CDD:273169"
     CDS             1..914
                     /gene="DDX11"
                     /coded_by="XM_054068378.1:40..2784"
                     /db_xref="GeneID:104056355"
ORIGIN      
        1 mmegemkgem eggrfpfpya pyriqerfma alygaleagr vgifesptgt gkslslicga
       61 lswlrdfeek kqqeearlla ledsrqegkk emtsaapgcp etkdsagepd wvtafvqkke
      121 erdlvdrlke ekirrkkred rlekirhnvq lkyaakrkrs eedetkrlfq lskevlsega
      181 ggdvveqldh neeelilaey esdeekkvis gleeddddle eehvtkiyyc srthsqlsqf
      241 vrevqkspfg kdtrlvslgs rqnlcvneev rrlgalqlin drcmemqknk qkkndeeneg
      301 kkrrvsrtvc pfysydqmqf lrdevlvevk dieqlvalgr etkacpyygs ryaipaaqlv
      361 vlpyqmilhe ptrsaagikl kdqiviidea hnlidtitci hsaevsgsql ccahsqllqy
      421 meryrkrlka knlmyikqil yllerfvavl ggnvnqnpsc qavsqkgtvl ksindflfqs
      481 qidninlfki qrycektlis rklfgfvery gspvtavktn kenqklaglq nflltlqqgs
      541 dkeasmvqst pveaendqlr tasplmqieg flsaltnanq dgrvilnrqg tvgqsslkfl
      601 llnpavhfak vveecravii aggtmqpvad freqllscag vdparivefs cghvippeni
      661 lpiilcsgps nqqleftyqt rdlpqmmdet grilcnvcnv vpggvvcffp syeyekqvya
      721 hwektglltr latkkkifqe pkkanqveqv lveyakcikl lvpllqrcsq aegqmtgall
      781 lsvvggkmse ginfcddlgr cvimvgmpyp nikspelqek mtwldktmpr aagqapsrvl
      841 ienlcmkavn qsigrairhq kdfasillld hrysrpatfn klpqwirert qvkptfgsaf
      901 aelrkfhrgk adal
//
LOCUS       XP_053924356             908 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-dependent DNA helicase DDX11 isoform X3 [Cuculus canorus].
ACCESSION   XP_053924356
VERSION     XP_053924356.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068381.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..908
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..908
                     /product="ATP-dependent DNA helicase DDX11 isoform X3"
                     /calculated_mol_wt=102913
     Region          25..>129
                     /region_name="P-loop containing Nucleoside Triphosphate
                     Hydrolases"
                     /note="Members of the P-loop NTPase domain superfamily are
                     characterized by a conserved nucleotide phosphate-binding
                     motif, also referred to as the Walker A motif
                     (GxxxxGK[S/T], where x is any residue), and the Walker B
                     motif (hhhh[D/E], where h is a...; cl38936"
                     /db_xref="CDD:476819"
     Region          <118..209
                     /region_name="Synaphin"
                     /note="Synaphin protein; pfam05835"
                     /db_xref="CDD:461755"
     Region          183..893
                     /region_name="rad3"
                     /note="DNA repair helicase (rad3); TIGR00604"
                     /db_xref="CDD:273169"
     CDS             1..908
                     /gene="DDX11"
                     /coded_by="XM_054068381.1:40..2766"
                     /db_xref="GeneID:104056355"
ORIGIN      
        1 mmegemkgem eggrfpfpya pyriqerfma alygaleagr vgifesptgt gkslslicga
       61 lswlrdfeek kqqeearlla ledsrqegkk emtsaapgcp etkdsagepd wvtafvqkke
      121 erdlvdrlke ekirrkkred rlekirhnvq lkyaakrkrs eedetkrlfq lskevlsega
      181 ggdvveqldh neeelilaey esdeekkvis gleeddddle eehvtkiyyc srthsqlsqf
      241 vrevqkspfg kdtrlvslgs rqnlcvneev rrlgalqlin drcmemqknk rekkndeene
      301 gkkrrvsrtv cpfysydqmq flrdevlvev kdieqlvalg retkacpyyg sryaipaaql
      361 vvlpyqmilh eptrsaagik lkdqiviide ahnlidtitc ihsaevsgsq lccahsqllq
      421 ymeryrkrlk aknlmyikqi lyllerfvav lggnvnqnps cqavsqkgtv lksindflfq
      481 sqidninlfk iqrycektli srklfgfver ygspvtavkt nkenqklagl qnflltlqqg
      541 sdkeasmvqs tpveaendql rtasplmqie gflsaltnan qdgrvilnrq gtvgqsslkf
      601 lllnpavhfa kvveecravi iaggtmqpva dfreqllsca gvdparivef scghvippen
      661 ilpiilcsgp snqqleftyq trdlpqmmde tgrilcnvcn vvpggvvcff psyeyekqvy
      721 ahwektgllt rlatkkkifq epkkanqveq vlveyakcik rcsqaegqmt galllsvvgg
      781 kmseginfcd dlgrcvimvg mpypnikspe lqekmtwldk tmpraagqap srvlienlcm
      841 kavnqsigra irhqkdfasi llldhrysrp atfnklpqwi rertqvkptf gsafaelrkf
      901 hrgkadal
//
LOCUS       XP_053924379             484 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 501 [Cuculus canorus].
ACCESSION   XP_053924379
VERSION     XP_053924379.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068404.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..484
                     /product="zinc finger protein 501"
                     /calculated_mol_wt=54697
     Region          108..>442
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          112..132
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          140..160
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(145,147,149,151..152,155..156,159,173,175,179..180,
                     183..184,187,201,203,205,207..208,211..212,215)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          168..188
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          196..216
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          224..244
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          252..272
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(257,259,261,263..264,267..268,271,285,287,291..292,
                     295..296,299,313,315,317,319..320,323..324,327)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          280..300
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          308..328
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          347..367
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          375..395
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(380,382,384,386..387,390..391,394,408,410,414..415,
                     418..419,422,436,438,440,442..443,446..447,450)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          403..423
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          431..451
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..484
                     /gene="LOC104056374"
                     /coded_by="XM_054068404.1:188..1642"
                     /db_xref="GeneID:104056374"
ORIGIN      
        1 msdnqrgklh qqspsraelh lfpsrkltgn tlqdanqrrd hkqkletese vetpfgekgg
       61 mvppcgmeaw dredsgrahi snvilagekp elpvcgnsai wiqqvvekty ecpecgksfs
      121 rssylsqhqr ihlaekpfic secgksftrn sdlikhqrih tgekpyqcne cektfsqrsn
      181 virhqrthtg erhyqcnecg ksfsqnshli vhqrshkgek pfncprceks fsdrssliih
      241 rrvhtgekph kckecgkhfr dssaiirhqr ihtgekpyec tecgktfrqs sslvthmrth
      301 tgekpykcpv cgksfsqssa ltthrrihgg kalpmyhssl lpnpyqcakc grrcsnhsal
      361 akhqtthaee rpyicvecgd sfcrssalnv hlrihsgerp ykceecgkmf rhssalgahl
      421 rihagakpyq cgecgksfrk ssalkvhmki hvakkpykct vgrrmltsai gleqmfgagi
      481 nssv
//
LOCUS       XP_053924385             484 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 501 [Cuculus canorus].
ACCESSION   XP_053924385
VERSION     XP_053924385.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068410.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..484
                     /product="zinc finger protein 501"
                     /calculated_mol_wt=54697
     Region          108..>442
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          112..132
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          140..160
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(145,147,149,151..152,155..156,159,173,175,179..180,
                     183..184,187,201,203,205,207..208,211..212,215)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          168..188
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          196..216
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          224..244
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          252..272
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(257,259,261,263..264,267..268,271,285,287,291..292,
                     295..296,299,313,315,317,319..320,323..324,327)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          280..300
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          308..328
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          347..367
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          375..395
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(380,382,384,386..387,390..391,394,408,410,414..415,
                     418..419,422,436,438,440,442..443,446..447,450)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          403..423
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          431..451
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..484
                     /gene="LOC104056374"
                     /coded_by="XM_054068410.1:261..1715"
                     /db_xref="GeneID:104056374"
ORIGIN      
        1 msdnqrgklh qqspsraelh lfpsrkltgn tlqdanqrrd hkqkletese vetpfgekgg
       61 mvppcgmeaw dredsgrahi snvilagekp elpvcgnsai wiqqvvekty ecpecgksfs
      121 rssylsqhqr ihlaekpfic secgksftrn sdlikhqrih tgekpyqcne cektfsqrsn
      181 virhqrthtg erhyqcnecg ksfsqnshli vhqrshkgek pfncprceks fsdrssliih
      241 rrvhtgekph kckecgkhfr dssaiirhqr ihtgekpyec tecgktfrqs sslvthmrth
      301 tgekpykcpv cgksfsqssa ltthrrihgg kalpmyhssl lpnpyqcakc grrcsnhsal
      361 akhqtthaee rpyicvecgd sfcrssalnv hlrihsgerp ykceecgkmf rhssalgahl
      421 rihagakpyq cgecgksfrk ssalkvhmki hvakkpykct vgrrmltsai gleqmfgagi
      481 nssv
//
LOCUS       XP_053924394             484 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 501 [Cuculus canorus].
ACCESSION   XP_053924394
VERSION     XP_053924394.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068419.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..484
                     /product="zinc finger protein 501"
                     /calculated_mol_wt=54697
     Region          108..>442
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          112..132
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          140..160
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(145,147,149,151..152,155..156,159,173,175,179..180,
                     183..184,187,201,203,205,207..208,211..212,215)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          168..188
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          196..216
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          224..244
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          252..272
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(257,259,261,263..264,267..268,271,285,287,291..292,
                     295..296,299,313,315,317,319..320,323..324,327)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          280..300
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          308..328
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          347..367
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          375..395
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(380,382,384,386..387,390..391,394,408,410,414..415,
                     418..419,422,436,438,440,442..443,446..447,450)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          403..423
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          431..451
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..484
                     /gene="LOC104056374"
                     /coded_by="XM_054068419.1:185..1639"
                     /db_xref="GeneID:104056374"
ORIGIN      
        1 msdnqrgklh qqspsraelh lfpsrkltgn tlqdanqrrd hkqkletese vetpfgekgg
       61 mvppcgmeaw dredsgrahi snvilagekp elpvcgnsai wiqqvvekty ecpecgksfs
      121 rssylsqhqr ihlaekpfic secgksftrn sdlikhqrih tgekpyqcne cektfsqrsn
      181 virhqrthtg erhyqcnecg ksfsqnshli vhqrshkgek pfncprceks fsdrssliih
      241 rrvhtgekph kckecgkhfr dssaiirhqr ihtgekpyec tecgktfrqs sslvthmrth
      301 tgekpykcpv cgksfsqssa ltthrrihgg kalpmyhssl lpnpyqcakc grrcsnhsal
      361 akhqtthaee rpyicvecgd sfcrssalnv hlrihsgerp ykceecgkmf rhssalgahl
      421 rihagakpyq cgecgksfrk ssalkvhmki hvakkpykct vgrrmltsai gleqmfgagi
      481 nssv
//
LOCUS       XP_053924407             646 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase RNF169 [Cuculus canorus].
ACCESSION   XP_053924407
VERSION     XP_053924407.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068432.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..646
                     /product="E3 ubiquitin-protein ligase RNF169"
                     /calculated_mol_wt=71989
     Region          27..>326
                     /region_name="rad18"
                     /note="DNA repair protein rad18; TIGR00599"
                     /db_xref="CDD:273165"
     Region          27..72
                     /region_name="RING_Ubox"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; cl17238"
                     /db_xref="CDD:473075"
     Site            order(27,30,42,44,47,50,62,65)
                     /site_type="other"
                     /note="cross-brace motif"
                     /db_xref="CDD:438111"
     Region          100..169
                     /region_name="UDM1_RNF169"
                     /note="UDM1 (ubiquitin-dependent DSB recruitment module 1)
                     domain found in RING finger protein 169; cd22264"
                     /db_xref="CDD:409017"
     Site            order(107..108,111,113..114,116..117,120,124..125,128,
                     131..132,134..136,138..139,142,146)
                     /site_type="other"
                     /note="ubiquitin binding site [polypeptide binding]"
                     /db_xref="CDD:409017"
     Region          593..646
                     /region_name="MIU_RNF169_C"
                     /note="C-terminal motif interacting with ubiquitin domain
                     found in RING finger protein 169; cd21951"
                     /db_xref="CDD:409265"
     Site            order(604,606..608,610..612,614..615,617..619,635..638)
                     /site_type="other"
                     /note="histone/ubiquitin binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409265"
     CDS             1..646
                     /gene="RNF169"
                     /coded_by="XM_054068432.1:22..1962"
                     /db_xref="GeneID:104064203"
ORIGIN      
        1 maaagpggra avqgrrrgrp gaeeaecsvc rqalaeavtp pcrhslclac fqrclqgpgl
       61 ccplcrtrls twarrhraep aattaagagg eqrppeqdfi frapiklskp gelreeyesq
      121 lrklkdeklq eekasedlih kfvlddmevg krkmeeqqkk deslvlkvnq dcfperlsds
      181 eneepfqgkp thrsafvskt saysfaflsg nltakversr scndtiqers ksrqrsapan
      241 ktkvppvtst saplagvlsc tqnnrclsap dltaekrlvl npvsslstlh kpersispes
      301 ndsiseelnh fkpivcspct ppkrlpdgrv lspliikstp rnlnrslqkp ttyeaspril
      361 kkweqifqer qikktlskat ltslalepge diivpditns stytkeqpqm qddhlppdtt
      421 gdprpeldff psiseiklgk gsernrdlqa ltaddsaaep garsnvtsln trvsevpdlk
      481 vntimdkscf slgpkmlnrr lmgvgaslpd nntlgvpikt sgkkqlkyln nselinvqns
      541 tcnsveniig eqppslrrgr krrcktkhle hngsvkrlrh tagevglppe erlvremeqk
      601 lqqeeedrrl alhlqrifds enrtvdrrkv rvdryllrsk stlgak
//
LOCUS       XP_009564694             622 aa            linear   VRT 09-MAR-2023
DEFINITION  glucose 1,6-bisphosphate synthase [Cuculus canorus].
ACCESSION   XP_009564694
VERSION     XP_009564694.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566399.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564694.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..622
                     /product="glucose 1,6-bisphosphate synthase"
                     /calculated_mol_wt=70059
     Region          22..622
                     /region_name="PTZ00150"
                     /note="phosphoglucomutase-2-like protein; Provisional"
                     /db_xref="CDD:240294"
     CDS             1..622
                     /gene="PGM2L1"
                     /coded_by="XM_009566399.2:162..2030"
                     /db_xref="GeneID:104064105"
ORIGIN      
        1 mgergapgdv nsnvlisrst gdaqldravw qwlswdknqk tkeqiesllq ngnhselrdr
       61 lccrltfgta glrsamgagf cyindltviq stqgiykyle rcfsdfkqrg fvvgydtrgq
      121 vtsncsskkl akltaavlla kdvpvyffst yvptpfvpya vqqlkavagv mitashnrke
      181 dngykvywen gaqitsphdk eiikcieecv epwngswnen lvdtsplrqd plkqicdsym
      241 edlkkicyhr elnvqtnlkf vhtsfhgvgh dyvqfafkaf gfhppipvpe qrdpdpdfst
      301 vkcpnpeege svlelslrla ekenakvvva tdpdadrlav aeqqengcwk vftgnelaal
      361 fgwwmfscwk encsedadvk nvymlattvs skilraialk egfhfeetlp gfkwigsrvk
      421 dlldngkevl fafeesigfm cgtsvldkdg vsaavviaem atyldsknlt laqklieihe
      481 tygyhiskts yflcydppti krifeklrnf dgpqsypsfc giynilhvrd ittgydssqp
      541 nkksvlpvsk ssqmitftfq ngcvatlrts gtepkikyya emcalpeqsd rtvleeelqk
      601 liealienfl epdkngliwr sa
//
LOCUS       XP_053924428             461 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA polymerase delta subunit 3 [Cuculus canorus].
ACCESSION   XP_053924428
VERSION     XP_053924428.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068453.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..461
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..461
                     /product="DNA polymerase delta subunit 3"
                     /calculated_mol_wt=50773
     Region          19..461
                     /region_name="CDC27"
                     /note="DNA polymerase subunit Cdc27; pfam09507"
                     /db_xref="CDD:462819"
     CDS             1..461
                     /gene="POLD3"
                     /coded_by="XM_054068453.1:191..1576"
                     /db_xref="GeneID:104064201"
ORIGIN      
        1 medelyleni defvtdqnri vtykwlsftl gvhvnqakqm lydyverkrk ensgaqlhvt
       61 ylvagdliqn ghvchkvavv redkleamks klatiasvhv ysiqkallkd sgplyntdyd
      121 ivktnlhncs kfsaiqcaaa vprvaaeasq artsvqagsq ppsdtnavsv pvvnghgpst
      181 tkqtsqqpkg imgmfaakaa sksqdtnket kaeakeppgv savsskppvk snimnnffgk
      241 aamnklkvnt vseqpkeeke vvkpsvpvae pesspntive kpgkktesar iqqkdkkskt
      301 kkvdksdnee erdsenkkkm krkrikqlqs dssdeedvpl pstpeeekal spapalktel
      361 epastevsag grkrkrkrvl kskmfideee gcmvtekvye sesctdsddd fakskppapq
      421 kqpvppmkke pkeekknlkk gaatgnrank qasimgffqk k
//
LOCUS       XP_053924440             433 aa            linear   VRT 09-MAR-2023
DEFINITION  chordin-like protein 2 [Cuculus canorus].
ACCESSION   XP_053924440
VERSION     XP_053924440.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068465.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..433
                     /product="chordin-like protein 2"
                     /calculated_mol_wt=48696
     Region          33..95
                     /region_name="VWC"
                     /note="von Willebrand factor type C domain; cl17735"
                     /db_xref="CDD:450195"
     Region          111..174
                     /region_name="VWC"
                     /note="von Willebrand factor type C domain; cl17735"
                     /db_xref="CDD:450195"
     Region          252..314
                     /region_name="VWC"
                     /note="von Willebrand factor type C domain; pfam00093"
                     /db_xref="CDD:278520"
     Region          352..433
                     /region_name="CHRDL_1_2_C"
                     /note="Chordin-like protein 1/2 C-terminal; pfam19548"
                     /db_xref="CDD:437380"
     CDS             1..433
                     /gene="CHRDL2"
                     /coded_by="XM_054068465.1:538..1839"
                     /db_xref="GeneID:104064202"
ORIGIN      
        1 mlpgasplaf flrcllllfa sesrawarpd mfcdfngkky spgeswhpyl ephglmycir
       61 cscsentnir cyriqcpalq caspitdpqq ccprclepht psglrapvks cqyngttyqq
      121 gemfttself psrqlnqcvq cscsegqiyc glvtcpellc sspltvpdsc cqvckdgsye
      181 ksteeeplql nrgvrhsrdq clgeemgrkp pgatastals sslefiprsf kakggggttv
      241 kiilkekhkk acvyngktys hgevwhpvfr lygllpcilc tcrdgvqdcq kitcpkeypc
      301 dspekvdgkc ckicpetrvk ptdeivttqc gknpnhvlvy mfvppssets keilrtiaie
      361 kepseeveiy nwklikgifh liqtkkiskq efkqeaqnfr litrtneghw nifraqtsel
      421 rmtespeket knl
//
LOCUS       XP_053924449             221 aa            linear   VRT 09-MAR-2023
DEFINITION  putative lipoyltransferase 2, mitochondrial [Cuculus canorus].
ACCESSION   XP_053924449
VERSION     XP_053924449.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068474.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..221
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..221
                     /product="putative lipoyltransferase 2, mitochondrial"
                     /calculated_mol_wt=23612
     Region          8..209
                     /region_name="BPL_LplA_LipB"
                     /note="biotin-lipoate ligase family; cl14057"
                     /db_xref="CDD:449326"
     Site            order(18..19,39,46..49,77..81,87..89,132..133,140,
                     143..145,156..158,160)
                     /site_type="active"
                     /db_xref="CDD:319740"
     CDS             1..221
                     /gene="LIPT2"
                     /coded_by="XM_054068474.1:4..669"
                     /db_xref="GeneID:128852340"
ORIGIN      
        1 mpvavravrl glcpyaaavr aqdrcvglar dgaesvvlse parpvyawgl rgapsaaaaa
       61 alrargagla avrrgghitf hgpgqllafp vldlrrrrlp lrryvealqa lvlglcrrlg
      121 lpaaralppp ltgvwvrdsk lcaigvhcgh yitshglaln cctdlswfdh ivpcglegkg
      181 vtslshelgq hvtvdevlqp fldsfqevfd ctfvfpedpe d
//
LOCUS       XP_053924462             124 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily E member 3 [Cuculus
            canorus].
ACCESSION   XP_053924462
VERSION     XP_053924462.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068487.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..124
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..124
                     /product="potassium voltage-gated channel subfamily E
                     member 3"
                     /calculated_mol_wt=13863
     Region          <80..>117
                     /region_name="ISK_Channel"
                     /note="Slow voltage-gated potassium channel; pfam02060"
                     /db_xref="CDD:460432"
     CDS             1..124
                     /gene="KCNE3"
                     /coded_by="XM_054068487.1:181..555"
                     /db_xref="GeneID:104064106"
ORIGIN      
        1 mlqsrlslva aqepprpedm eennrtetwy qslqavlnal nqtlqgvvlc ptdrpattta
       61 aarnisahpg hpsrndnaym yilfvmtlfa vtvgslilgy trsrkvdkrs dpyhvyiknr
      121 vsmi
//
LOCUS       XP_053924470            1768 aa            linear   VRT 09-MAR-2023
DEFINITION  BCL-6 corepressor isoform X1 [Cuculus canorus].
ACCESSION   XP_053924470
VERSION     XP_053924470.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068495.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1768
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1768
                     /product="BCL-6 corepressor isoform X1"
                     /calculated_mol_wt=195288
     Region          <255..671
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1207..1424
                     /region_name="BCOR"
                     /note="BCL-6 co-repressor, non-ankyrin-repeat region;
                     pfam15808"
                     /db_xref="CDD:434953"
     Region          <1475..1593
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          1477..1508
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(1478,1482..1483,1486..1488,1490..1491,1495,1498,
                     1508,1510,1512,1516..1517,1520..1522,1524..1525,1529,1532,
                     1541,1543,1545,1549..1550,1553..1555,1557..1558,1562,1565)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          1510..1541
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          1543..1572
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          1646..1759
                     /region_name="PUFD"
                     /note="BCORL-PCGF1-binding domain; pfam16553"
                     /db_xref="CDD:465171"
     Site            order(1648..1649,1651..1655,1657..1659,1661,1663,1672,
                     1674,1716..1718,1720..1721,1723..1724,1741,1752,1754,
                     1756..1758)
                     /site_type="other"
                     /note="RAWUL domain interface [polypeptide binding]"
                     /db_xref="CDD:271224"
     CDS             1..1768
                     /gene="BCOR"
                     /coded_by="XM_054068495.1:106..5412"
                     /db_xref="GeneID:104057284"
ORIGIN      
        1 mlsatplygn vhswmsnerv rmcginedrk ipvndgdapk srlelreenh lnhavvdatt
       61 ahridslaal smdrsglmre glrvpssivy sslcglgsek srdatssiag lgftpernpe
      121 iqfksnppea venapvsgka pngfsaiykt ppgiqknsvp tgetlgldrv agdkqsplgv
      181 ngasylrlpw vnpymegatp aiypfldspn kyslnmykal lpqqstyslp qhlayspvct
      241 ngerflylpp shyvtphips slaspmrlst asaspaippl vhcpdkslsw kmgvspnnpv
      301 dahtyphiqs skqprvpaak paptnipadp alllphsprp sprlplptqa gdaytdfhkh
      361 fpgittspss avtlpkpyvn vgsefpasrl sngklpkgnd aseapppaap htrkaghdrk
      421 dnrsppllek qtptkdvtdk pldlsakvve teiasksdhs kkmtptvlvh graggggphl
      481 pssdiiqket ispgngcpiy rpeiistaps swvvpgpspg eesgksvqlk nkaldwvipq
      541 qrssscprmg steavissvs gtvavggrpa saspapnanv dcakttrsst estasviqhv
      601 gqpiatpakh snkvakscsq eanfkaseta lasspiflpp neafrspplp yprsylpypv
      661 pegiaispls lhgkghvyph pvllpngsly pghlapkpgl pyslpagrge fmtyqdalgm
      721 gmvhpmllqh stleinkeek verrsrsher vryedpalrg rlpellessg kmhfevpsdk
      781 svklhqsssh gknlaksdkh lfpdllrdeq eakgeanvtn vgfatessnq andptkhkve
      841 qasqhrdfiv mreefgrnnd lhetynfkqa qsssvfslrk edlsvsqpke rvtiqpssaf
      901 lenthesdvp tlafgkvqed tkpfcmgtap pnidtsqtyt kdgaddtest dgkilkpkps
      961 klakriansa gyvgdrfkcv ttelyadssq lsreqralqm eglqedsilc lpaayceram
     1021 mrfselemke regqtatkds evcrfsqadw enlkgnsekk pksvaledai adqndndrcn
     1081 ftttennqgh fletpeekel snekcylerh siyekaedqp tedigqhpcp rldrkrkhsg
     1141 ervqndgsqn enfvdelqde lipkakkkkn skddwperem tnnssnhlee pscnevtnlk
     1201 vcieltglhp kkqrhlqhlr elweqqvspe rspsgklgrq srkdlaeavq peatakvkdf
     1261 teerhtkkrs eaksnrswse eslktsdneq glpvfpvsph mkslsstnan skrqaqpsct
     1321 pasrlaakqq kikesrktdg lytdeeedfq hasllqkyse cekpsgkrqc ktkhlalqer
     1381 rrrssltgdd ttdienaedk vtvtrkvrkr peptsdcdss paksneqkly drlqqtpsll
     1441 pvsqpsqlpi tspppettps rpmppearrl ivnknagetl lqraarlgye evvlyclesk
     1501 vcdvnhrdna gycalheaca rgwlsivrhl leygadvncs aqdgtrpihd avendhleiv
     1561 rlllsygadp tlatysgrti vkmthselme tflteyltdl qgrsvddpgl cwdfygssvc
     1621 dpkdesgfdv lanppgpgde dedgfsdvfe fefsdepplp cyniqvclsq gprnwlllsd
     1681 vvkrlkmssr ifrcnfpnle vvtiteaefy kqtslsqlfs cptdleafnp eskelldlve
     1741 ftselktllg sslhwlhphe dppfdilw
//
LOCUS       XP_053924472            1768 aa            linear   VRT 09-MAR-2023
DEFINITION  BCL-6 corepressor isoform X1 [Cuculus canorus].
ACCESSION   XP_053924472
VERSION     XP_053924472.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068497.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1768
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1768
                     /product="BCL-6 corepressor isoform X1"
                     /calculated_mol_wt=195288
     Region          <255..671
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1207..1424
                     /region_name="BCOR"
                     /note="BCL-6 co-repressor, non-ankyrin-repeat region;
                     pfam15808"
                     /db_xref="CDD:434953"
     Region          <1475..1593
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          1477..1508
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(1478,1482..1483,1486..1488,1490..1491,1495,1498,
                     1508,1510,1512,1516..1517,1520..1522,1524..1525,1529,1532,
                     1541,1543,1545,1549..1550,1553..1555,1557..1558,1562,1565)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          1510..1541
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          1543..1572
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          1646..1759
                     /region_name="PUFD"
                     /note="BCORL-PCGF1-binding domain; pfam16553"
                     /db_xref="CDD:465171"
     Site            order(1648..1649,1651..1655,1657..1659,1661,1663,1672,
                     1674,1716..1718,1720..1721,1723..1724,1741,1752,1754,
                     1756..1758)
                     /site_type="other"
                     /note="RAWUL domain interface [polypeptide binding]"
                     /db_xref="CDD:271224"
     CDS             1..1768
                     /gene="BCOR"
                     /coded_by="XM_054068497.1:294..5600"
                     /db_xref="GeneID:104057284"
ORIGIN      
        1 mlsatplygn vhswmsnerv rmcginedrk ipvndgdapk srlelreenh lnhavvdatt
       61 ahridslaal smdrsglmre glrvpssivy sslcglgsek srdatssiag lgftpernpe
      121 iqfksnppea venapvsgka pngfsaiykt ppgiqknsvp tgetlgldrv agdkqsplgv
      181 ngasylrlpw vnpymegatp aiypfldspn kyslnmykal lpqqstyslp qhlayspvct
      241 ngerflylpp shyvtphips slaspmrlst asaspaippl vhcpdkslsw kmgvspnnpv
      301 dahtyphiqs skqprvpaak paptnipadp alllphsprp sprlplptqa gdaytdfhkh
      361 fpgittspss avtlpkpyvn vgsefpasrl sngklpkgnd aseapppaap htrkaghdrk
      421 dnrsppllek qtptkdvtdk pldlsakvve teiasksdhs kkmtptvlvh graggggphl
      481 pssdiiqket ispgngcpiy rpeiistaps swvvpgpspg eesgksvqlk nkaldwvipq
      541 qrssscprmg steavissvs gtvavggrpa saspapnanv dcakttrsst estasviqhv
      601 gqpiatpakh snkvakscsq eanfkaseta lasspiflpp neafrspplp yprsylpypv
      661 pegiaispls lhgkghvyph pvllpngsly pghlapkpgl pyslpagrge fmtyqdalgm
      721 gmvhpmllqh stleinkeek verrsrsher vryedpalrg rlpellessg kmhfevpsdk
      781 svklhqsssh gknlaksdkh lfpdllrdeq eakgeanvtn vgfatessnq andptkhkve
      841 qasqhrdfiv mreefgrnnd lhetynfkqa qsssvfslrk edlsvsqpke rvtiqpssaf
      901 lenthesdvp tlafgkvqed tkpfcmgtap pnidtsqtyt kdgaddtest dgkilkpkps
      961 klakriansa gyvgdrfkcv ttelyadssq lsreqralqm eglqedsilc lpaayceram
     1021 mrfselemke regqtatkds evcrfsqadw enlkgnsekk pksvaledai adqndndrcn
     1081 ftttennqgh fletpeekel snekcylerh siyekaedqp tedigqhpcp rldrkrkhsg
     1141 ervqndgsqn enfvdelqde lipkakkkkn skddwperem tnnssnhlee pscnevtnlk
     1201 vcieltglhp kkqrhlqhlr elweqqvspe rspsgklgrq srkdlaeavq peatakvkdf
     1261 teerhtkkrs eaksnrswse eslktsdneq glpvfpvsph mkslsstnan skrqaqpsct
     1321 pasrlaakqq kikesrktdg lytdeeedfq hasllqkyse cekpsgkrqc ktkhlalqer
     1381 rrrssltgdd ttdienaedk vtvtrkvrkr peptsdcdss paksneqkly drlqqtpsll
     1441 pvsqpsqlpi tspppettps rpmppearrl ivnknagetl lqraarlgye evvlyclesk
     1501 vcdvnhrdna gycalheaca rgwlsivrhl leygadvncs aqdgtrpihd avendhleiv
     1561 rlllsygadp tlatysgrti vkmthselme tflteyltdl qgrsvddpgl cwdfygssvc
     1621 dpkdesgfdv lanppgpgde dedgfsdvfe fefsdepplp cyniqvclsq gprnwlllsd
     1681 vvkrlkmssr ifrcnfpnle vvtiteaefy kqtslsqlfs cptdleafnp eskelldlve
     1741 ftselktllg sslhwlhphe dppfdilw
//
LOCUS       XP_053924479            1768 aa            linear   VRT 09-MAR-2023
DEFINITION  BCL-6 corepressor isoform X1 [Cuculus canorus].
ACCESSION   XP_053924479
VERSION     XP_053924479.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068504.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1768
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1768
                     /product="BCL-6 corepressor isoform X1"
                     /calculated_mol_wt=195288
     Region          <255..671
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1207..1424
                     /region_name="BCOR"
                     /note="BCL-6 co-repressor, non-ankyrin-repeat region;
                     pfam15808"
                     /db_xref="CDD:434953"
     Region          <1475..1593
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          1477..1508
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(1478,1482..1483,1486..1488,1490..1491,1495,1498,
                     1508,1510,1512,1516..1517,1520..1522,1524..1525,1529,1532,
                     1541,1543,1545,1549..1550,1553..1555,1557..1558,1562,1565)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          1510..1541
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          1543..1572
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          1646..1759
                     /region_name="PUFD"
                     /note="BCORL-PCGF1-binding domain; pfam16553"
                     /db_xref="CDD:465171"
     Site            order(1648..1649,1651..1655,1657..1659,1661,1663,1672,
                     1674,1716..1718,1720..1721,1723..1724,1741,1752,1754,
                     1756..1758)
                     /site_type="other"
                     /note="RAWUL domain interface [polypeptide binding]"
                     /db_xref="CDD:271224"
     CDS             1..1768
                     /gene="BCOR"
                     /coded_by="XM_054068504.1:543..5849"
                     /db_xref="GeneID:104057284"
ORIGIN      
        1 mlsatplygn vhswmsnerv rmcginedrk ipvndgdapk srlelreenh lnhavvdatt
       61 ahridslaal smdrsglmre glrvpssivy sslcglgsek srdatssiag lgftpernpe
      121 iqfksnppea venapvsgka pngfsaiykt ppgiqknsvp tgetlgldrv agdkqsplgv
      181 ngasylrlpw vnpymegatp aiypfldspn kyslnmykal lpqqstyslp qhlayspvct
      241 ngerflylpp shyvtphips slaspmrlst asaspaippl vhcpdkslsw kmgvspnnpv
      301 dahtyphiqs skqprvpaak paptnipadp alllphsprp sprlplptqa gdaytdfhkh
      361 fpgittspss avtlpkpyvn vgsefpasrl sngklpkgnd aseapppaap htrkaghdrk
      421 dnrsppllek qtptkdvtdk pldlsakvve teiasksdhs kkmtptvlvh graggggphl
      481 pssdiiqket ispgngcpiy rpeiistaps swvvpgpspg eesgksvqlk nkaldwvipq
      541 qrssscprmg steavissvs gtvavggrpa saspapnanv dcakttrsst estasviqhv
      601 gqpiatpakh snkvakscsq eanfkaseta lasspiflpp neafrspplp yprsylpypv
      661 pegiaispls lhgkghvyph pvllpngsly pghlapkpgl pyslpagrge fmtyqdalgm
      721 gmvhpmllqh stleinkeek verrsrsher vryedpalrg rlpellessg kmhfevpsdk
      781 svklhqsssh gknlaksdkh lfpdllrdeq eakgeanvtn vgfatessnq andptkhkve
      841 qasqhrdfiv mreefgrnnd lhetynfkqa qsssvfslrk edlsvsqpke rvtiqpssaf
      901 lenthesdvp tlafgkvqed tkpfcmgtap pnidtsqtyt kdgaddtest dgkilkpkps
      961 klakriansa gyvgdrfkcv ttelyadssq lsreqralqm eglqedsilc lpaayceram
     1021 mrfselemke regqtatkds evcrfsqadw enlkgnsekk pksvaledai adqndndrcn
     1081 ftttennqgh fletpeekel snekcylerh siyekaedqp tedigqhpcp rldrkrkhsg
     1141 ervqndgsqn enfvdelqde lipkakkkkn skddwperem tnnssnhlee pscnevtnlk
     1201 vcieltglhp kkqrhlqhlr elweqqvspe rspsgklgrq srkdlaeavq peatakvkdf
     1261 teerhtkkrs eaksnrswse eslktsdneq glpvfpvsph mkslsstnan skrqaqpsct
     1321 pasrlaakqq kikesrktdg lytdeeedfq hasllqkyse cekpsgkrqc ktkhlalqer
     1381 rrrssltgdd ttdienaedk vtvtrkvrkr peptsdcdss paksneqkly drlqqtpsll
     1441 pvsqpsqlpi tspppettps rpmppearrl ivnknagetl lqraarlgye evvlyclesk
     1501 vcdvnhrdna gycalheaca rgwlsivrhl leygadvncs aqdgtrpihd avendhleiv
     1561 rlllsygadp tlatysgrti vkmthselme tflteyltdl qgrsvddpgl cwdfygssvc
     1621 dpkdesgfdv lanppgpgde dedgfsdvfe fefsdepplp cyniqvclsq gprnwlllsd
     1681 vvkrlkmssr ifrcnfpnle vvtiteaefy kqtslsqlfs cptdleafnp eskelldlve
     1741 ftselktllg sslhwlhphe dppfdilw
//
LOCUS       XP_053924487            1750 aa            linear   VRT 09-MAR-2023
DEFINITION  BCL-6 corepressor isoform X2 [Cuculus canorus].
ACCESSION   XP_053924487
VERSION     XP_053924487.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068512.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1750
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1750
                     /product="BCL-6 corepressor isoform X2"
                     /calculated_mol_wt=193321
     Region          <255..671
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1189..1406
                     /region_name="BCOR"
                     /note="BCL-6 co-repressor, non-ankyrin-repeat region;
                     pfam15808"
                     /db_xref="CDD:434953"
     Region          <1457..1575
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          1459..1490
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(1460,1464..1465,1468..1470,1472..1473,1477,1480,
                     1490,1492,1494,1498..1499,1502..1504,1506..1507,1511,1514,
                     1523,1525,1527,1531..1532,1535..1537,1539..1540,1544,1547)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          1492..1523
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          1525..1554
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          1628..1741
                     /region_name="PUFD"
                     /note="BCORL-PCGF1-binding domain; pfam16553"
                     /db_xref="CDD:465171"
     Site            order(1630..1631,1633..1637,1639..1641,1643,1645,1654,
                     1656,1698..1700,1702..1703,1705..1706,1723,1734,1736,
                     1738..1740)
                     /site_type="other"
                     /note="RAWUL domain interface [polypeptide binding]"
                     /db_xref="CDD:271224"
     CDS             1..1750
                     /gene="BCOR"
                     /coded_by="XM_054068512.1:106..5358"
                     /db_xref="GeneID:104057284"
ORIGIN      
        1 mlsatplygn vhswmsnerv rmcginedrk ipvndgdapk srlelreenh lnhavvdatt
       61 ahridslaal smdrsglmre glrvpssivy sslcglgsek srdatssiag lgftpernpe
      121 iqfksnppea venapvsgka pngfsaiykt ppgiqknsvp tgetlgldrv agdkqsplgv
      181 ngasylrlpw vnpymegatp aiypfldspn kyslnmykal lpqqstyslp qhlayspvct
      241 ngerflylpp shyvtphips slaspmrlst asaspaippl vhcpdkslsw kmgvspnnpv
      301 dahtyphiqs skqprvpaak paptnipadp alllphsprp sprlplptqa gdaytdfhkh
      361 fpgittspss avtlpkpyvn vgsefpasrl sngklpkgnd aseapppaap htrkaghdrk
      421 dnrsppllek qtptkdvtdk pldlsakvve teiasksdhs kkmtptvlvh graggggphl
      481 pssdiiqket ispgngcpiy rpeiistaps swvvpgpspg eesgksvqlk nkaldwvipq
      541 qrssscprmg steavissvs gtvavggrpa saspapnanv dcakttrsst estasviqhv
      601 gqpiatpakh snkvakscsq eanfkaseta lasspiflpp neafrspplp yprsylpypv
      661 pegiaispls lhgkghvyph pvllpngsly pghlapkpgl pyslpagrge fmtyqdalgm
      721 gmvhpmllqh stleinkeek verrsrsher vryedpalrg rlpellessg kmhfevpsdk
      781 svklhqsssh gknlaksdkh lfpdllrdeq eakgeanvtn vgfatessnq andptkhkve
      841 qasqhrdfiv mreefgrnnd lhetynfkqa qsssvfslrk edlsvsqpke rvtiqpssaf
      901 lenthesdvp tlafgkvqed tkpfcmgtap pnidtsqtyt kdgaddtest dgkilkpkps
      961 klakriansa gyvgdrfkcv ttelyadssq lsreqralqr ammrfselem keregqtatk
     1021 dsevcrfsqa dwenlkgnse kkpksvaled aiadqndndr cnftttennq ghfletpeek
     1081 elsnekcyle rhsiyekaed qptedigqhp cprldrkrkh sgervqndgs qnenfvdelq
     1141 delipkakkk knskddwper emtnnssnhl eepscnevtn lkvcieltgl hpkkqrhlqh
     1201 lrelweqqvs perspsgklg rqsrkdlaea vqpeatakvk dfteerhtkk rseaksnrsw
     1261 seeslktsdn eqglpvfpvs phmkslsstn anskrqaqps ctpasrlaak qqkikesrkt
     1321 dglytdeeed fqhasllqky secekpsgkr qcktkhlalq errrrssltg ddttdienae
     1381 dkvtvtrkvr krpeptsdcd sspaksneqk lydrlqqtps llpvsqpsql pitspppett
     1441 psrpmppear rlivnknage tllqraarlg yeevvlycle skvcdvnhrd nagycalhea
     1501 cargwlsivr hlleygadvn csaqdgtrpi hdavendhle ivrlllsyga dptlatysgr
     1561 tivkmthsel metflteylt dlqgrsvddp glcwdfygss vcdpkdesgf dvlanppgpg
     1621 dededgfsdv fefefsdepp lpcyniqvcl sqgprnwlll sdvvkrlkms srifrcnfpn
     1681 levvtiteae fykqtslsql fscptdleaf npeskelldl veftselktl lgsslhwlhp
     1741 hedppfdilw
//
LOCUS       XP_053924496            1734 aa            linear   VRT 09-MAR-2023
DEFINITION  BCL-6 corepressor isoform X3 [Cuculus canorus].
ACCESSION   XP_053924496
VERSION     XP_053924496.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068521.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1734
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1734
                     /product="BCL-6 corepressor isoform X3"
                     /calculated_mol_wt=191358
     Region          <255..671
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1173..1390
                     /region_name="BCOR"
                     /note="BCL-6 co-repressor, non-ankyrin-repeat region;
                     pfam15808"
                     /db_xref="CDD:434953"
     Region          <1441..1559
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          1443..1474
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(1444,1448..1449,1452..1454,1456..1457,1461,1464,
                     1474,1476,1478,1482..1483,1486..1488,1490..1491,1495,1498,
                     1507,1509,1511,1515..1516,1519..1521,1523..1524,1528,1531)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          1476..1507
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          1509..1538
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          1612..1725
                     /region_name="PUFD"
                     /note="BCORL-PCGF1-binding domain; pfam16553"
                     /db_xref="CDD:465171"
     Site            order(1614..1615,1617..1621,1623..1625,1627,1629,1638,
                     1640,1682..1684,1686..1687,1689..1690,1707,1718,1720,
                     1722..1724)
                     /site_type="other"
                     /note="RAWUL domain interface [polypeptide binding]"
                     /db_xref="CDD:271224"
     CDS             1..1734
                     /gene="BCOR"
                     /coded_by="XM_054068521.1:106..5310"
                     /db_xref="GeneID:104057284"
ORIGIN      
        1 mlsatplygn vhswmsnerv rmcginedrk ipvndgdapk srlelreenh lnhavvdatt
       61 ahridslaal smdrsglmre glrvpssivy sslcglgsek srdatssiag lgftpernpe
      121 iqfksnppea venapvsgka pngfsaiykt ppgiqknsvp tgetlgldrv agdkqsplgv
      181 ngasylrlpw vnpymegatp aiypfldspn kyslnmykal lpqqstyslp qhlayspvct
      241 ngerflylpp shyvtphips slaspmrlst asaspaippl vhcpdkslsw kmgvspnnpv
      301 dahtyphiqs skqprvpaak paptnipadp alllphsprp sprlplptqa gdaytdfhkh
      361 fpgittspss avtlpkpyvn vgsefpasrl sngklpkgnd aseapppaap htrkaghdrk
      421 dnrsppllek qtptkdvtdk pldlsakvve teiasksdhs kkmtptvlvh graggggphl
      481 pssdiiqket ispgngcpiy rpeiistaps swvvpgpspg eesgksvqlk nkaldwvipq
      541 qrssscprmg steavissvs gtvavggrpa saspapnanv dcakttrsst estasviqhv
      601 gqpiatpakh snkvakscsq eanfkaseta lasspiflpp neafrspplp yprsylpypv
      661 pegiaispls lhgkghvyph pvllpngsly pghlapkpgl pyslpagrge fmtyqdalgm
      721 gmvhpmllqh stleinkeek verrsrsher vryedpalrg rlpellessg kmhfevpsdk
      781 svklhqsssh gknlaksdkh lfpdllrdeq eakgeanvtn vgfatessnq andptkhkve
      841 qasqhrdfiv mreefgrnnd lhetynfkqa qsssvfslrk edlsvsqpke rvtiqpssaf
      901 lenthesdvp tlafgkvqed tkpfcmgtap pnidtsqtyt kdgaddtest dgkilkpkps
      961 klakriansa gyvgdrfkcv ttelyadssq lsreqralqm eglqedsilc lpaayceram
     1021 mrfselemke regqtatkds evcrfsqadw enlkgnsekk pksvaledai adqndndrcn
     1081 ftttennqgh fletpeekel snekcylerh siyekaedqp tedigqhpcp rldrkrkhsg
     1141 ervqndgsqn enfvdelqde lipkakkkkn skglhpkkqr hlqhlrelwe qqvspersps
     1201 gklgrqsrkd laeavqpeat akvkdfteer htkkrseaks nrswseeslk tsdneqglpv
     1261 fpvsphmksl sstnanskrq aqpsctpasr laakqqkike srktdglytd eeedfqhasl
     1321 lqkysecekp sgkrqcktkh lalqerrrrs sltgddttdi enaedkvtvt rkvrkrpept
     1381 sdcdsspaks neqklydrlq qtpsllpvsq psqlpitspp pettpsrpmp pearrlivnk
     1441 nagetllqra arlgyeevvl ycleskvcdv nhrdnagyca lheacargwl sivrhlleyg
     1501 advncsaqdg trpihdaven dhleivrlll sygadptlat ysgrtivkmt hselmetflt
     1561 eyltdlqgrs vddpglcwdf ygssvcdpkd esgfdvlanp pgpgdededg fsdvfefefs
     1621 depplpcyni qvclsqgprn wlllsdvvkr lkmssrifrc nfpnlevvti teaefykqts
     1681 lsqlfscptd leafnpeske lldlveftse lktllgsslh wlhphedppf dilw
//
LOCUS       XP_053924503            1716 aa            linear   VRT 09-MAR-2023
DEFINITION  BCL-6 corepressor isoform X4 [Cuculus canorus].
ACCESSION   XP_053924503
VERSION     XP_053924503.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068528.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1716
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1716
                     /product="BCL-6 corepressor isoform X4"
                     /calculated_mol_wt=189390
     Region          <255..671
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1155..1372
                     /region_name="BCOR"
                     /note="BCL-6 co-repressor, non-ankyrin-repeat region;
                     pfam15808"
                     /db_xref="CDD:434953"
     Region          <1423..1541
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          1425..1456
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(1426,1430..1431,1434..1436,1438..1439,1443,1446,
                     1456,1458,1460,1464..1465,1468..1470,1472..1473,1477,1480,
                     1489,1491,1493,1497..1498,1501..1503,1505..1506,1510,1513)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          1458..1489
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          1491..1520
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          1594..1707
                     /region_name="PUFD"
                     /note="BCORL-PCGF1-binding domain; pfam16553"
                     /db_xref="CDD:465171"
     Site            order(1596..1597,1599..1603,1605..1607,1609,1611,1620,
                     1622,1664..1666,1668..1669,1671..1672,1689,1700,1702,
                     1704..1706)
                     /site_type="other"
                     /note="RAWUL domain interface [polypeptide binding]"
                     /db_xref="CDD:271224"
     CDS             1..1716
                     /gene="BCOR"
                     /coded_by="XM_054068528.1:106..5256"
                     /db_xref="GeneID:104057284"
ORIGIN      
        1 mlsatplygn vhswmsnerv rmcginedrk ipvndgdapk srlelreenh lnhavvdatt
       61 ahridslaal smdrsglmre glrvpssivy sslcglgsek srdatssiag lgftpernpe
      121 iqfksnppea venapvsgka pngfsaiykt ppgiqknsvp tgetlgldrv agdkqsplgv
      181 ngasylrlpw vnpymegatp aiypfldspn kyslnmykal lpqqstyslp qhlayspvct
      241 ngerflylpp shyvtphips slaspmrlst asaspaippl vhcpdkslsw kmgvspnnpv
      301 dahtyphiqs skqprvpaak paptnipadp alllphsprp sprlplptqa gdaytdfhkh
      361 fpgittspss avtlpkpyvn vgsefpasrl sngklpkgnd aseapppaap htrkaghdrk
      421 dnrsppllek qtptkdvtdk pldlsakvve teiasksdhs kkmtptvlvh graggggphl
      481 pssdiiqket ispgngcpiy rpeiistaps swvvpgpspg eesgksvqlk nkaldwvipq
      541 qrssscprmg steavissvs gtvavggrpa saspapnanv dcakttrsst estasviqhv
      601 gqpiatpakh snkvakscsq eanfkaseta lasspiflpp neafrspplp yprsylpypv
      661 pegiaispls lhgkghvyph pvllpngsly pghlapkpgl pyslpagrge fmtyqdalgm
      721 gmvhpmllqh stleinkeek verrsrsher vryedpalrg rlpellessg kmhfevpsdk
      781 svklhqsssh gknlaksdkh lfpdllrdeq eakgeanvtn vgfatessnq andptkhkve
      841 qasqhrdfiv mreefgrnnd lhetynfkqa qsssvfslrk edlsvsqpke rvtiqpssaf
      901 lenthesdvp tlafgkvqed tkpfcmgtap pnidtsqtyt kdgaddtest dgkilkpkps
      961 klakriansa gyvgdrfkcv ttelyadssq lsreqralqr ammrfselem keregqtatk
     1021 dsevcrfsqa dwenlkgnse kkpksvaled aiadqndndr cnftttennq ghfletpeek
     1081 elsnekcyle rhsiyekaed qptedigqhp cprldrkrkh sgervqndgs qnenfvdelq
     1141 delipkakkk knskglhpkk qrhlqhlrel weqqvspers psgklgrqsr kdlaeavqpe
     1201 atakvkdfte erhtkkrsea ksnrswsees lktsdneqgl pvfpvsphmk slsstnansk
     1261 rqaqpsctpa srlaakqqki kesrktdgly tdeeedfqha sllqkysece kpsgkrqckt
     1321 khlalqerrr rssltgddtt dienaedkvt vtrkvrkrpe ptsdcdsspa ksneqklydr
     1381 lqqtpsllpv sqpsqlpits pppettpsrp mppearrliv nknagetllq raarlgyeev
     1441 vlycleskvc dvnhrdnagy calheacarg wlsivrhlle ygadvncsaq dgtrpihdav
     1501 endhleivrl llsygadptl atysgrtivk mthselmetf lteyltdlqg rsvddpglcw
     1561 dfygssvcdp kdesgfdvla nppgpgdede dgfsdvfefe fsdepplpcy niqvclsqgp
     1621 rnwlllsdvv krlkmssrif rcnfpnlevv titeaefykq tslsqlfscp tdleafnpes
     1681 kelldlveft selktllgss lhwlhphedp pfdilw
//
LOCUS       XP_053924511            1650 aa            linear   VRT 09-MAR-2023
DEFINITION  BCL-6 corepressor isoform X5 [Cuculus canorus].
ACCESSION   XP_053924511
VERSION     XP_053924511.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068536.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1650
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1650
                     /product="BCL-6 corepressor isoform X5"
                     /calculated_mol_wt=181588
     Region          <255..671
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1090..1306
                     /region_name="BCOR"
                     /note="BCL-6 co-repressor, non-ankyrin-repeat region;
                     pfam15808"
                     /db_xref="CDD:434953"
     Region          <1357..1475
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          1359..1390
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(1360,1364..1365,1368..1370,1372..1373,1377,1380,
                     1390,1392,1394,1398..1399,1402..1404,1406..1407,1411,1414,
                     1423,1425,1427,1431..1432,1435..1437,1439..1440,1444,1447)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          1392..1423
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          1425..1454
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          1528..1641
                     /region_name="PUFD"
                     /note="BCORL-PCGF1-binding domain; pfam16553"
                     /db_xref="CDD:465171"
     Site            order(1530..1531,1533..1537,1539..1541,1543,1545,1554,
                     1556,1598..1600,1602..1603,1605..1606,1623,1634,1636,
                     1638..1640)
                     /site_type="other"
                     /note="RAWUL domain interface [polypeptide binding]"
                     /db_xref="CDD:271224"
     CDS             1..1650
                     /gene="BCOR"
                     /coded_by="XM_054068536.1:106..5058"
                     /db_xref="GeneID:104057284"
ORIGIN      
        1 mlsatplygn vhswmsnerv rmcginedrk ipvndgdapk srlelreenh lnhavvdatt
       61 ahridslaal smdrsglmre glrvpssivy sslcglgsek srdatssiag lgftpernpe
      121 iqfksnppea venapvsgka pngfsaiykt ppgiqknsvp tgetlgldrv agdkqsplgv
      181 ngasylrlpw vnpymegatp aiypfldspn kyslnmykal lpqqstyslp qhlayspvct
      241 ngerflylpp shyvtphips slaspmrlst asaspaippl vhcpdkslsw kmgvspnnpv
      301 dahtyphiqs skqprvpaak paptnipadp alllphsprp sprlplptqa gdaytdfhkh
      361 fpgittspss avtlpkpyvn vgsefpasrl sngklpkgnd aseapppaap htrkaghdrk
      421 dnrsppllek qtptkdvtdk pldlsakvve teiasksdhs kkmtptvlvh graggggphl
      481 pssdiiqket ispgngcpiy rpeiistaps swvvpgpspg eesgksvqlk nkaldwvipq
      541 qrssscprmg steavissvs gtvavggrpa saspapnanv dcakttrsst estasviqhv
      601 gqpiatpakh snkvakscsq eanfkaseta lasspiflpp neafrspplp yprsylpypv
      661 pegiaispls lhgkghvyph pvllpngsly pghlapkpgl pyslpagrge fmtyqdalgm
      721 gmvhpmllqh stleinkeek verrsrsher vryedpalrg rlpellessg kmhfevpsdk
      781 svklhqsssh gknlaksdkh lfpdllrdeq eakgeanvtn vgfatessnq andptkhkve
      841 qasqhrdfiv mreefgrnnd lhetynfkqa qsssvfslrk edlsvsqpke rvtiqpssaf
      901 lenthesdvp tlafgkvqed tkpfcmgtap pnidtsqtyt kdgaddtest dgkilkpkps
      961 klakriansa gyvgdrfkcv ttelyadssq lsreqralqm eglqedsilc lpaayceram
     1021 mrfselemke regqtatkds evcrfsqadw enlkgnsekk pksvaledai adqndndrcn
     1081 ftttennqgh fletpeekel snekcylerh siyekaedqp tedigqhpcp rldrkrkhsg
     1141 ervqndgsqn enfvdelqde lipkakkkkn skglpvfpvs phmkslsstn anskrqaqps
     1201 ctpasrlaak qqkikesrkt dglytdeeed fqhasllqky secekpsgkr qcktkhlalq
     1261 errrrssltg ddttdienae dkvtvtrkvr krpeptsdcd sspaksneqk lydrlqqtps
     1321 llpvsqpsql pitspppett psrpmppear rlivnknage tllqraarlg yeevvlycle
     1381 skvcdvnhrd nagycalhea cargwlsivr hlleygadvn csaqdgtrpi hdavendhle
     1441 ivrlllsyga dptlatysgr tivkmthsel metflteylt dlqgrsvddp glcwdfygss
     1501 vcdpkdesgf dvlanppgpg dededgfsdv fefefsdepp lpcyniqvcl sqgprnwlll
     1561 sdvvkrlkms srifrcnfpn levvtiteae fykqtslsql fscptdleaf npeskelldl
     1621 veftselktl lgsslhwlhp hedppfdilw
//
LOCUS       XP_009564335             762 aa            linear   VRT 09-MAR-2023
DEFINITION  CCR4-NOT transcription complex subunit 4 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009564335
VERSION     XP_009564335.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566040.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..762
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..762
                     /product="CCR4-NOT transcription complex subunit 4 isoform
                     X1"
                     /calculated_mol_wt=83526
     Region          14..>350
                     /region_name="MOT2"
                     /note="Transcriptional repressor [Transcription]; COG5175"
                     /db_xref="CDD:227502"
     Region          <267..>519
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     CDS             1..762
                     /gene="CNOT4"
                     /coded_by="XM_009566040.2:388..2676"
                     /db_xref="GeneID:104063775"
ORIGIN      
        1 msrspdaked pvecplcmep leiddinffp ctcgyqicrf cwhrirtden glcpacrkpy
       61 pedpavykpl sqeelqrikn ekkqkqnerk qkisenrkhl asvrvvqknl vfvvglsqrl
      121 adpevlkrpe yfgkfgkihk vvinnstsya gsqgpsasay vtyirsedal raiqcvnnvv
      181 vdgrtlkasl gttkycsyfl knmqcpkpdc mylhelgdea asftkeemqa gkhqeyeqkl
      241 lqelyklnpn flqlstgtvd knknkvtalq rpnsnnkdaw pslqsssksa ngltmehrkt
      301 ppilengtdp ehmtpdgans dfgpidkpsd slsigngdss qqitnsdtps pppgltkpnp
      361 vipisssnhs arspfegavt esqslfsdnf rhpnpipsgl ppfpsspqts ndwptapepq
      421 slftsetipv ssstdwqaaf gfgsskqqed dlgfdpfdit rkaladliek elsvqdqpsl
      481 sptslqnptp htttakgpgs gflhpaaptn anslsstfpv mpqrfpqfqq hravynsfsf
      541 pgqaarypwm afprnsimhl nhtanptsns nfldlnlppq hstglggipi sdnsssvesl
      601 nmkewqdglr allpnininf gglpnassps nanhsvptsn tattdslnwd spgswmdpai
      661 itgipastgn sldtlqddnp phwlkslqal tevdgpsaap sqthhsnpfs tqiplhrasw
      721 npysppsnpt sfhspppgfq tafrppsktp tdllqssald rh
//
LOCUS       XP_009564350             710 aa            linear   VRT 09-MAR-2023
DEFINITION  CCR4-NOT transcription complex subunit 4 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_009564350
VERSION     XP_009564350.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566055.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..710
                     /product="CCR4-NOT transcription complex subunit 4 isoform
                     X2"
                     /calculated_mol_wt=77895
     Region          14..>319
                     /region_name="MOT2"
                     /note="Transcriptional repressor [Transcription]; COG5175"
                     /db_xref="CDD:227502"
     CDS             1..710
                     /gene="CNOT4"
                     /coded_by="XM_009566055.2:71..2203"
                     /db_xref="GeneID:104063775"
ORIGIN      
        1 msrspdaked pvecplcmep leiddinffp ctcgyqicrf cwhrirtden glcpacrkpy
       61 pedpavykpl sqeelqrikn ekkqkqnerk qkisenrkhl asvrvvqknl vfvvglsqrl
      121 adpevlkrpe yfgkfgkihk vvinnstsya gsqgpsasay vtyirsedal raiqcvnnvv
      181 vdgrtlkasl gttkycsyfl knmqcpkpdc mylhelgdea asftkeemqa gkhqeyeqkl
      241 lqelyklnpn flqlstgtvd knknkvtalq spidkpsdsl signgdssqq itnsdtpspp
      301 pgltkpnpvi pisssnhsar spfegavtes qslfsdnfrh pnpipsglpp fpsspqtsnd
      361 wptapepqsl ftsetipvss stdwqaafgf gsskqqeddl gfdpfditrk aladliekel
      421 svqdqpslsp tslqnptpht ttakgpgsgf lhpaaptnan slsstfpvmp qrfpqfqqhr
      481 avynsfsfpg qaarypwmaf prnsimhlnh tanptsnsnf ldlnlppqhs tglggipisd
      541 nsssveslnm kewqdglral lpnininfgg lpnasspsna nhsvptsnta ttdslnwdsp
      601 gswmdpaiit gipastgnsl dtlqddnpph wlkslqalte vdgpsaapsq thhsnpfstq
      661 iplhraswnp ysppsnptsf hspppgfqta frppsktptd llqssaldrh
//
LOCUS       XP_053924532             691 aa            linear   VRT 09-MAR-2023
DEFINITION  CCR4-NOT transcription complex subunit 4 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053924532
VERSION     XP_053924532.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068557.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..691
                     /product="CCR4-NOT transcription complex subunit 4 isoform
                     X3"
                     /calculated_mol_wt=75987
     Region          14..>350
                     /region_name="MOT2"
                     /note="Transcriptional repressor [Transcription]; COG5175"
                     /db_xref="CDD:227502"
     Region          <314..667
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..691
                     /gene="CNOT4"
                     /coded_by="XM_054068557.1:71..2146"
                     /db_xref="GeneID:104063775"
ORIGIN      
        1 msrspdaked pvecplcmep leiddinffp ctcgyqicrf cwhrirtden glcpacrkpy
       61 pedpavykpl sqeelqrikn ekkqkqnerk qkisenrkhl asvrvvqknl vfvvglsqrl
      121 adpevlkrpe yfgkfgkihk vvinnstsya gsqgpsasay vtyirsedal raiqcvnnvv
      181 vdgrtlkasl gttkycsyfl knmqcpkpdc mylhelgdea asftkeemqa gkhqeyeqkl
      241 lqelyklnpn flqlstgtvd knknkvtalq rpnsnnkdaw pslqsssksa ngltmehrkt
      301 ppilengtdp ehmtpdgans dfgpidkpsd slsigngdss qqitnsdtps pppgltkpnp
      361 vipisssnhs arspfegavt esqslfsdnf rhpnpipsgl ppfpsspqts ndwptapepq
      421 slftsetipv ssstdwqaaf gfgsskqqed dlgfdpfdit rkaladliek elsvqdqpsl
      481 sptslqnptp htttakgpgs gflhpaaptn anslsstfpv mpqrfpqfqq hravynsfsf
      541 pgqaarypwm afprnsimhl nhtanptsns nfldlnlppq hstglggipi sgipastgns
      601 ldtlqddnpp hwlkslqalt evdgpsaaps qthhsnpfst qiplhraswn pysppsnpts
      661 fhspppgfqt afrppsktpt dllqssaldr h
//
LOCUS       XP_009564364             639 aa            linear   VRT 09-MAR-2023
DEFINITION  CCR4-NOT transcription complex subunit 4 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_009564364
VERSION     XP_009564364.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566069.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..639
                     /product="CCR4-NOT transcription complex subunit 4 isoform
                     X4"
                     /calculated_mol_wt=70356
     Region          14..>319
                     /region_name="MOT2"
                     /note="Transcriptional repressor [Transcription]; COG5175"
                     /db_xref="CDD:227502"
     Region          <294..615
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..639
                     /gene="CNOT4"
                     /coded_by="XM_009566069.2:71..1990"
                     /db_xref="GeneID:104063775"
ORIGIN      
        1 msrspdaked pvecplcmep leiddinffp ctcgyqicrf cwhrirtden glcpacrkpy
       61 pedpavykpl sqeelqrikn ekkqkqnerk qkisenrkhl asvrvvqknl vfvvglsqrl
      121 adpevlkrpe yfgkfgkihk vvinnstsya gsqgpsasay vtyirsedal raiqcvnnvv
      181 vdgrtlkasl gttkycsyfl knmqcpkpdc mylhelgdea asftkeemqa gkhqeyeqkl
      241 lqelyklnpn flqlstgtvd knknkvtalq spidkpsdsl signgdssqq itnsdtpspp
      301 pgltkpnpvi pisssnhsar spfegavtes qslfsdnfrh pnpipsglpp fpsspqtsnd
      361 wptapepqsl ftsetipvss stdwqaafgf gsskqqeddl gfdpfditrk aladliekel
      421 svqdqpslsp tslqnptpht ttakgpgsgf lhpaaptnan slsstfpvmp qrfpqfqqhr
      481 avynsfsfpg qaarypwmaf prnsimhlnh tanptsnsnf ldlnlppqhs tglggipisg
      541 ipastgnsld tlqddnpphw lkslqaltev dgpsaapsqt hhsnpfstqi plhraswnpy
      601 sppsnptsfh spppgfqtaf rppsktptdl lqssaldrh
//
LOCUS       XP_053924557             981 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 15 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053924557
VERSION     XP_053924557.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068582.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..981
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..981
                     /product="ubiquitin carboxyl-terminal hydrolase 15 isoform
                     X1"
                     /calculated_mol_wt=111985
     Region          9..931
                     /region_name="UBP12"
                     /note="Ubiquitin C-terminal hydrolase [Posttranslational
                     modification, protein turnover, chaperones]; COG5560"
                     /db_xref="CDD:227847"
     CDS             1..981
                     /gene="USP15"
                     /coded_by="XM_054068582.1:97..3042"
                     /db_xref="GeneID:104061475"
ORIGIN      
        1 maeggaadle tqrtdvaall ktalrkgdtw ylvdsrwfkq wkkyvgfdsw dkyqmgdqnv
       61 ypgpidnsgl lkdgdsqslk ehlideldyi llptegwnrl vswytlmdgq epiarkvveq
      121 gmfvkhckve vyltelklce ngnmnnvvtr rfskadtidt iekeirkifn ipgeketrlw
      181 nkymsntfep lnkpdstiqd aglyqgqvlv ieqknedgtw prgpstpksp gasnfstlpk
      241 ispslsnnyn nmnnrnvkns nyclpsytay knydysepgr hneqpglcgl snlgntcfmn
      301 saiqclsntp plteyflndk yqeelnfdnp lgmrgeiaks yaelikqmws gkysyvtpra
      361 fktqvgrfap qfsgyqqqdc qellaflldg lhedlnrirk kpyiqlkdad grpdkvvaee
      421 awenhlkrnd siivdifhgl fkstlvcpec akisvtfdpf cyltlplpmk kertlevylv
      481 rtdplakpmq ykvvvpkign ildlctalsa lsgvaadkmi vtdiynhrfh rifgmdenls
      541 simerddiyv feiainrted teqviipvcl rekcrhssys hsgsslfgqp fliavprnnt
      601 edklynllll rmcryvktct esedtegslh cckdhgingn gpngiheegs psemetdeqd
      661 dessqdqelp senensqsed svggdndsen glctedtckg qpftghkkrl ftfqfnnlgn
      721 tdlnyikddt rhirfddrqp rldersflal dwdpelkkry fddsaaedfe khesveykpp
      781 kkpfvklkdc ielfttkekl gaedpwycpn ckehqqatkk ldlwslppvl vvhlkrfsys
      841 rymrdkldtl vdfpindldm seflinpnag pcrynliavs nhyggmgggh ytafaknkdd
      901 gkwyyfddss vstacedqiv skaayvlfyq rqdtisgtgf fpldretkqg asaatgiple
      961 sdedsnendn dlenencmht n
//
LOCUS       XP_053924565             953 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 15 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053924565
VERSION     XP_053924565.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068590.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..953
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..953
                     /product="ubiquitin carboxyl-terminal hydrolase 15 isoform
                     X2"
                     /calculated_mol_wt=108950
     Region          9..903
                     /region_name="UBP12"
                     /note="Ubiquitin C-terminal hydrolase [Posttranslational
                     modification, protein turnover, chaperones]; COG5560"
                     /db_xref="CDD:227847"
     CDS             1..953
                     /gene="USP15"
                     /coded_by="XM_054068590.1:98..2959"
                     /db_xref="GeneID:104061475"
ORIGIN      
        1 maeggaadle tqrtdvaall ktalrkgdtw ylvdsrwfkq wkkyvgfdsw dkyqmgdqnv
       61 ypgpidnsgl lkdgdsqslk ehlideldyi llptegwnrl vswytlmdgq epiarkvveq
      121 gmfvkhckve vyltelklce ngnmnnvvtr rfskadtidt iekeirkifn ipgeketrlw
      181 nkymsntfep lnkpdstiqd aglyqgqvlv ieqknedgtw prgpstpnvk nsnyclpsyt
      241 ayknydysep grhneqpglc glsnlgntcf mnsaiqclsn tpplteyfln dkyqeelnfd
      301 nplgmrgeia ksyaelikqm wsgkysyvtp rafktqvgrf apqfsgyqqq dcqellafll
      361 dglhedlnri rkkpyiqlkd adgrpdkvva eeawenhlkr ndsiivdifh glfkstlvcp
      421 ecakisvtfd pfcyltlplp mkkertlevy lvrtdplakp mqykvvvpki gnildlctal
      481 salsgvaadk mivtdiynhr fhrifgmden lssimerddi yvfeiainrt edteqviipv
      541 clrekcrhss yshsgsslfg qpfliavprn ntedklynll llrmcryvkt ctesedtegs
      601 lhcckdhgin gngpngihee gspsemetde qddessqdqe lpsenensqs edsvggdnds
      661 englctedtc kgqpftghkk rlftfqfnnl gntdlnyikd dtrhirfddr qprldersfl
      721 aldwdpelkk ryfddsaaed fekhesveyk ppkkpfvklk dcielfttke klgaedpwyc
      781 pnckehqqat kkldlwslpp vlvvhlkrfs ysrymrdkld tlvdfpindl dmseflinpn
      841 agpcrynlia vsnhyggmgg ghytafaknk ddgkwyyfdd ssvstacedq ivskaayvlf
      901 yqrqdtisgt gffpldretk qgasaatgip lesdedsnen dndlenencm htn
//
LOCUS       XP_053924569             860 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 15 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053924569
VERSION     XP_053924569.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068594.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..860
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..860
                     /product="ubiquitin carboxyl-terminal hydrolase 15 isoform
                     X3"
                     /calculated_mol_wt=98116
     Region          14..101
                     /region_name="Ubiquitin_3"
                     /note="Ubiquitin-like domain; pfam14836"
                     /db_xref="CDD:405518"
     Region          <161..810
                     /region_name="UBP12"
                     /note="Ubiquitin C-terminal hydrolase [Posttranslational
                     modification, protein turnover, chaperones]; COG5560"
                     /db_xref="CDD:227847"
     CDS             1..860
                     /gene="USP15"
                     /coded_by="XM_054068594.1:52..2634"
                     /db_xref="GeneID:104061475"
ORIGIN      
        1 mfvkhckvev yltelklcen gnmnnvvtrr fskadtidti ekeirkifni pgeketrlwn
       61 kymsntfepl nkpdstiqda glyqgqvlvi eqknedgtwp rgpstpkspg asnfstlpki
      121 spslsnnynn mnnrnvknsn yclpsytayk nydysepgrh neqpglcgls nlgntcfmns
      181 aiqclsntpp lteyflndky qeelnfdnpl gmrgeiaksy aelikqmwsg kysyvtpraf
      241 ktqvgrfapq fsgyqqqdcq ellaflldgl hedlnrirkk pyiqlkdadg rpdkvvaeea
      301 wenhlkrnds iivdifhglf kstlvcpeca kisvtfdpfc yltlplpmkk ertlevylvr
      361 tdplakpmqy kvvvpkigni ldlctalsal sgvaadkmiv tdiynhrfhr ifgmdenlss
      421 imerddiyvf eiainrtedt eqviipvclr ekcrhssysh sgsslfgqpf liavprnnte
      481 dklynllllr mcryvktcte sedtegslhc ckdhgingng pngiheegsp semetdeqdd
      541 essqdqelps enensqseds vggdndseng lctedtckgq pftghkkrlf tfqfnnlgnt
      601 dlnyikddtr hirfddrqpr ldersflald wdpelkkryf ddsaaedfek hesveykppk
      661 kpfvklkdci elfttkeklg aedpwycpnc kehqqatkkl dlwslppvlv vhlkrfsysr
      721 ymrdkldtlv dfpindldms eflinpnagp crynliavsn hyggmggghy tafaknkddg
      781 kwyyfddssv stacedqivs kaayvlfyqr qdtisgtgff pldretkqga saatgiples
      841 dedsnendnd lenencmhtn
//
LOCUS       XP_053924577             225 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 15 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053924577
VERSION     XP_053924577.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068602.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..225
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..225
                     /product="ubiquitin carboxyl-terminal hydrolase 15 isoform
                     X4"
                     /calculated_mol_wt=25833
     Region          23..121
                     /region_name="DUSP"
                     /note="Domain in ubiquitin-specific proteases; smart00695"
                     /db_xref="CDD:197831"
     Region          135..207
                     /region_name="Ubiquitin_3"
                     /note="Ubiquitin-like domain; pfam14836"
                     /db_xref="CDD:405518"
     CDS             1..225
                     /gene="USP15"
                     /coded_by="XM_054068602.1:101..778"
                     /db_xref="GeneID:104061475"
ORIGIN      
        1 maeggaadle tqrtdvaall ktalrkgdtw ylvdsrwfkq wkkyvgfdsw dkyqmgdqnv
       61 ypgpidnsgl lkdgdsqslk ehlideldyi llptegwnrl vswytlmdgq epiarkvveq
      121 gmfvkhckve vyltelklce ngnmnnvvtr rfskadtidt iekeirkifn ipgeketrlw
      181 nkymsntfep lnkpdstiqd aglyqgqmni kdnigcksyt ninvn
//
LOCUS       XP_053924588             896 aa            linear   VRT 09-MAR-2023
DEFINITION  HMG box transcription factor BBX isoform X1 [Cuculus canorus].
ACCESSION   XP_053924588
VERSION     XP_053924588.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068613.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..896
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..896
                     /product="HMG box transcription factor BBX isoform X1"
                     /calculated_mol_wt=99565
     Region          81..149
                     /region_name="HMG-box_HBP2"
                     /note="high mobility group (HMG)-box found in HMG
                     box-containing protein 2 (HBP2) and similar proteins;
                     cd21989"
                     /db_xref="CDD:438805"
     Site            order(81..82,84..88,91..92,99,111..112,115,118..119,126,
                     130,133,137,140)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438805"
     Region          192..353
                     /region_name="DUF2028"
                     /note="Domain of unknown function (DUF2028); pfam09667"
                     /db_xref="CDD:430742"
     CDS             1..896
                     /gene="BBX"
                     /coded_by="XM_054068613.1:83..2773"
                     /db_xref="GeneID:104056172"
ORIGIN      
        1 mkgssrnkdh stegegtgkr pkrkclqwhp llakklldfs eeeeeeeeee didkvpllgt
       61 dcleqdadet eddesseqra rrpmnafllf ckrhrslvrk ehprldnrga tkiladwwav
      121 ldpkekqkyt dmakeykdaf mkanpgykwc patnkpvkaq astitnrkkl wafasdtakd
      181 lpsprkmmkt edmpqlnfgm adptqmggls mlllagehal taqevssnac qsdatnstea
      241 cqksslfqfa eissstsqpg vlgavkqtee salfqfaeis sntsqlsspe pvkhcgksal
      301 fqlaeissst shsgpsdltk qcgtsalfql aemclasegv kmkepgktkv eapqgvgkev
      361 peemeieele katmkdsckg kveqtelekm qnwdkskaee setakcreft slamernpfe
      421 rndnimdmyy spefsvadmn ilglkpekik kkkkknkldr htnekstpkk pckkrqsses
      481 diesvmytie avakgdwgae rlgetlrkkp rpisnvkesv ldtkspkkkv kskekktske
      541 kppettkesk pldflsitps kevpceasdn ikvepltpte dvvpqtlpeq vktedsdcvk
      601 kietcgsrks ersckgalyk tlvsegmlts lranvdrgkr ssgkgnssdh egcwneenwa
      661 fsqsgtsgnk klkktkpkee fvfgknssvp rkkrkigsss seqpksnkgs fqsqkknffy
      721 kivskckhrk klnvpdtail sedrnsiesa wknkislsal ntpepammhe plvgsqkrka
      781 rktkithlvr tadgrvspag gtledkpkel pqstpqktss setdcnsecs rnaeteenhs
      841 itsdmpavsa ffslaalaev aamenvhrsq ratplphdgq pnemsqapvl iscadq
//
LOCUS       XP_053924597             894 aa            linear   VRT 09-MAR-2023
DEFINITION  HMG box transcription factor BBX isoform X2 [Cuculus canorus].
ACCESSION   XP_053924597
VERSION     XP_053924597.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068622.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..894
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..894
                     /product="HMG box transcription factor BBX isoform X2"
                     /calculated_mol_wt=99736
     Region          81..149
                     /region_name="HMG-box_HBP2"
                     /note="high mobility group (HMG)-box found in HMG
                     box-containing protein 2 (HBP2) and similar proteins;
                     cd21989"
                     /db_xref="CDD:438805"
     Site            order(81..82,84..88,91..92,99,111..112,115,118..119,126,
                     130,133,137,140)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438805"
     Region          192..326
                     /region_name="DUF2028"
                     /note="Domain of unknown function (DUF2028); pfam09667"
                     /db_xref="CDD:430742"
     CDS             1..894
                     /gene="BBX"
                     /coded_by="XM_054068622.1:83..2767"
                     /db_xref="GeneID:104056172"
ORIGIN      
        1 mkgssrnkdh stegegtgkr pkrkclqwhp llakklldfs eeeeeeeeee didkvpllgt
       61 dcleqdadet eddesseqra rrpmnafllf ckrhrslvrk ehprldnrga tkiladwwav
      121 ldpkekqkyt dmakeykdaf mkanpgykwc patnkpvkaq astitnrkkl wafasdtakd
      181 lpsprkmmkt edmpqlnfgm adptqmggls mlllagehal taqevssnac qsdatnstea
      241 cqksslfqfa eissstsqpg vlgavkqtee salfqfaeis sstshsgpsd ltkqcgtsal
      301 fqlaemclas egvkmkepgk tkveapqgvg kevpeemeie elekatmkds ckgkveqtel
      361 ekmqnwdksk aeesetakcr eftslamern pferndnimd myyspefsva dmnilglkpe
      421 kikkkkkknk ldrhtnekst pkkpckkrqs sesdiesvmy tieavakgdw gaerlgetlr
      481 kkprpisnvk esvldtkspk kkvkskekkt skekppettk eskpldflsi tpskevpcea
      541 sdnikveplt ptedvvpqtl peqvktedsd cvkkietcgs rksersckga lyktlvsegm
      601 ltslranvdr gkrssgkgns sdhegcwnee nwafsqsgts gnkklkktkp keefvfglak
      661 leeefekkfn slpqyspitf drknssvprk krkigsssse qpksnkgsfq sqkknffyki
      721 vskckhrkkl nvpdtailse drnsiesawk nkislsalnt pepammhepl vgsqkrkark
      781 tkithlvrta dgrvspaggt ledkpkelpq stpqktssse tdcnsecsrn aeteenhsit
      841 sdmpavsaff slaalaevaa menvhrsqra tplphdgqpn emsqapvlis cadq
//
LOCUS       XP_053924605             892 aa            linear   VRT 09-MAR-2023
DEFINITION  HMG box transcription factor BBX isoform X3 [Cuculus canorus].
ACCESSION   XP_053924605
VERSION     XP_053924605.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068630.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..892
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..892
                     /product="HMG box transcription factor BBX isoform X3"
                     /calculated_mol_wt=99138
     Region          81..149
                     /region_name="HMG-box_HBP2"
                     /note="high mobility group (HMG)-box found in HMG
                     box-containing protein 2 (HBP2) and similar proteins;
                     cd21989"
                     /db_xref="CDD:438805"
     Site            order(81..82,84..88,91..92,99,111..112,115,118..119,126,
                     130,133,137,140)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438805"
     Region          192..353
                     /region_name="DUF2028"
                     /note="Domain of unknown function (DUF2028); pfam09667"
                     /db_xref="CDD:430742"
     CDS             1..892
                     /gene="BBX"
                     /coded_by="XM_054068630.1:83..2761"
                     /db_xref="GeneID:104056172"
ORIGIN      
        1 mkgssrnkdh stegegtgkr pkrkclqwhp llakklldfs eeeeeeeeee didkvpllgt
       61 dcleqdadet eddesseqra rrpmnafllf ckrhrslvrk ehprldnrga tkiladwwav
      121 ldpkekqkyt dmakeykdaf mkanpgykwc patnkpvkaq astitnrkkl wafasdtakd
      181 lpsprkmmkt edmpqlnfgm adptqmggls mlllagehal taqevssnac qsdatnstea
      241 cqksslfqfa eissstsqpg vlgavkqtee salfqfaeis sntsqlsspe pvkhcgksal
      301 fqlaeissst shsgpsdltk qcgtsalfql aemclasegv kmkepgktkv eapqgvgkev
      361 peemeieele katmkdsckg kveqtelekm qnwdkskaee setakcreft slamernpfe
      421 rndnimdmyy spefsvadmn ilglkpekik kkkkknkldr htnekstpkk pckkrqsses
      481 diesvmytie avakgdwgae rlgetlrkkp rpisnvkesv ldtkspkkkv kskekktske
      541 kppettkesk pldflsitps kevpceasdn ikvepltpte dvvpqtlpeq vktedsdcvk
      601 kietcgsrks ersckgalyk tlvsegmlts lranvdrgkr ssgkgnssdh egcwneenwa
      661 fsqsgtsgnk klkktkpkee fvfglaklee efekkfnslp qyspitfdrk nssvprkkrk
      721 igsssseqpk snkailsedr nsiesawknk islsalntpe pammheplvg sqkrkarktk
      781 ithlvrtadg rvspaggtle dkpkelpqst pqktsssetd cnsecsrnae teenhsitsd
      841 mpavsaffsl aalaevaame nvhrsqratp lphdgqpnem sqapvlisca dq
//
LOCUS       XP_053924611             867 aa            linear   VRT 09-MAR-2023
DEFINITION  HMG box transcription factor BBX isoform X4 [Cuculus canorus].
ACCESSION   XP_053924611
VERSION     XP_053924611.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068636.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..867
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..867
                     /product="HMG box transcription factor BBX isoform X4"
                     /calculated_mol_wt=96942
     Region          81..149
                     /region_name="HMG-box_HBP2"
                     /note="high mobility group (HMG)-box found in HMG
                     box-containing protein 2 (HBP2) and similar proteins;
                     cd21989"
                     /db_xref="CDD:438805"
     Site            order(81..82,84..88,91..92,99,111..112,115,118..119,126,
                     130,133,137,140)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438805"
     Region          192..299
                     /region_name="DUF2028"
                     /note="Domain of unknown function (DUF2028); pfam09667"
                     /db_xref="CDD:430742"
     CDS             1..867
                     /gene="BBX"
                     /coded_by="XM_054068636.1:83..2686"
                     /db_xref="GeneID:104056172"
ORIGIN      
        1 mkgssrnkdh stegegtgkr pkrkclqwhp llakklldfs eeeeeeeeee didkvpllgt
       61 dcleqdadet eddesseqra rrpmnafllf ckrhrslvrk ehprldnrga tkiladwwav
      121 ldpkekqkyt dmakeykdaf mkanpgykwc patnkpvkaq astitnrkkl wafasdtakd
      181 lpsprkmmkt edmpqlnfgm adptqmggls mlllagehal taqevssnac qsdatnstea
      241 cqksslfqfa eissstshsg psdltkqcgt salfqlaemc lasegvkmke pgktkveapq
      301 gvgkevpeem eieelekatm kdsckgkveq telekmqnwd kskaeeseta kcreftslam
      361 ernpferndn imdmyyspef svadmnilgl kpekikkkkk knkldrhtne kstpkkpckk
      421 rqssesdies vmytieavak gdwgaerlge tlrkkprpis nvkesvldtk spkkkvkske
      481 kktskekppe ttkeskpldf lsitpskevp ceasdnikve pltptedvvp qtlpeqvkte
      541 dsdcvkkiet cgsrksersc kgalyktlvs egmltslran vdrgkrssgk gnssdhegcw
      601 neenwafsqs gtsgnkklkk tkpkeefvfg lakleeefek kfnslpqysp itfdrknssv
      661 prkkrkigss sseqpksnkg sfqsqkknff ykivskckhr kklnvpdtai lsedrnsies
      721 awknkislsa lntpepammh eplvgsqkrk arktkithlv rtadgrvspa ggtledkpke
      781 lpqstpqkts ssetdcnsec srnaeteenh sitsdmpavs affslaalae vaamenvhrs
      841 qratplphdg qpnemsqapv liscadq
//
LOCUS       XP_053924617             867 aa            linear   VRT 09-MAR-2023
DEFINITION  HMG box transcription factor BBX isoform X5 [Cuculus canorus].
ACCESSION   XP_053924617
VERSION     XP_053924617.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068642.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..867
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..867
                     /product="HMG box transcription factor BBX isoform X5"
                     /calculated_mol_wt=96126
     Region          81..149
                     /region_name="HMG-box_HBP2"
                     /note="high mobility group (HMG)-box found in HMG
                     box-containing protein 2 (HBP2) and similar proteins;
                     cd21989"
                     /db_xref="CDD:438805"
     Site            order(81..82,84..88,91..92,99,111..112,115,118..119,126,
                     130,133,137,140)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438805"
     Region          192..353
                     /region_name="DUF2028"
                     /note="Domain of unknown function (DUF2028); pfam09667"
                     /db_xref="CDD:430742"
     CDS             1..867
                     /gene="BBX"
                     /coded_by="XM_054068642.1:83..2686"
                     /db_xref="GeneID:104056172"
ORIGIN      
        1 mkgssrnkdh stegegtgkr pkrkclqwhp llakklldfs eeeeeeeeee didkvpllgt
       61 dcleqdadet eddesseqra rrpmnafllf ckrhrslvrk ehprldnrga tkiladwwav
      121 ldpkekqkyt dmakeykdaf mkanpgykwc patnkpvkaq astitnrkkl wafasdtakd
      181 lpsprkmmkt edmpqlnfgm adptqmggls mlllagehal taqevssnac qsdatnstea
      241 cqksslfqfa eissstsqpg vlgavkqtee salfqfaeis sntsqlsspe pvkhcgksal
      301 fqlaeissst shsgpsdltk qcgtsalfql aemclasegv kmkepgktkv eapqgvgkev
      361 peemeieele katmkdsckg kveqtelekm qnwdkskaee setakcreft slamernpfe
      421 rndnimdmyy spefsvadmn ilglkpekik kkkkknkldr htnekstpkk pckkrqsses
      481 diesvmytie avakgdwgae rlgetlrkkp rpisnvkesv ldtkspkkkv kskekktske
      541 kppettkesk pldflsitps kevpceasdn ikvepltpte dvvpqtlpeq vktedsdcvk
      601 kietcgsrks ersckgalyk tlvsegmlts lranvdrgkr ssgkgnssdh egcwneenwa
      661 fsqsgtsgnk klkktkpkee fvfgknssvp rkkrkigsss seqpksnkai lsedrnsies
      721 awknkislsa lntpepammh eplvgsqkrk arktkithlv rtadgrvspa ggtledkpke
      781 lpqstpqkts ssetdcnsec srnaeteenh sitsdmpavs affslaalae vaamenvhrs
      841 qratplphdg qpnemsqapv liscadq
//
LOCUS       XP_053924626             866 aa            linear   VRT 09-MAR-2023
DEFINITION  HMG box transcription factor BBX isoform X6 [Cuculus canorus].
ACCESSION   XP_053924626
VERSION     XP_053924626.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068651.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..866
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..866
                     /product="HMG box transcription factor BBX isoform X6"
                     /calculated_mol_wt=96298
     Region          81..149
                     /region_name="HMG-box_HBP2"
                     /note="high mobility group (HMG)-box found in HMG
                     box-containing protein 2 (HBP2) and similar proteins;
                     cd21989"
                     /db_xref="CDD:438805"
     Site            order(81..82,84..88,91..92,99,111..112,115,118..119,126,
                     130,133,137,140)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438805"
     Region          192..353
                     /region_name="DUF2028"
                     /note="Domain of unknown function (DUF2028); pfam09667"
                     /db_xref="CDD:430742"
     CDS             1..866
                     /gene="BBX"
                     /coded_by="XM_054068651.1:83..2683"
                     /db_xref="GeneID:104056172"
ORIGIN      
        1 mkgssrnkdh stegegtgkr pkrkclqwhp llakklldfs eeeeeeeeee didkvpllgt
       61 dcleqdadet eddesseqra rrpmnafllf ckrhrslvrk ehprldnrga tkiladwwav
      121 ldpkekqkyt dmakeykdaf mkanpgykwc patnkpvkaq astitnrkkl wafasdtakd
      181 lpsprkmmkt edmpqlnfgm adptqmggls mlllagehal taqevssnac qsdatnstea
      241 cqksslfqfa eissstsqpg vlgavkqtee salfqfaeis sntsqlsspe pvkhcgksal
      301 fqlaeissst shsgpsdltk qcgtsalfql aemclasegv kmkepgktkv eapqgvgkev
      361 peemeieele katmkdsckg kveqtelekm qnwdkskaee setakcreft slamernpfe
      421 rndnimdmyy spefsvadmn ilglkpekik kkkkknkldr htnekstpkk pckkrqsses
      481 diesvmytie avakgdwgae rlgetlrkkp rpisnvkesv ldtkspkkkv kskekktske
      541 kppettkesk pldflsitps kevpceasdn ikvepltpte dvvpqtlpeq vktedsdcvk
      601 kietcgsrks ersckgalyk tlvsegmlts lranvdrgkr ssgkgnssdh egcwneenwa
      661 fsqsgtsgnk klkktkpkee fvfglaklee efekkfnslp qyspitfdrk nssvprkkrk
      721 igsssseqpk snkepammhe plvgsqkrka rktkithlvr tadgrvspag gtledkpkel
      781 pqstpqktss setdcnsecs rnaeteenhs itsdmpavsa ffslaalaev aamenvhrsq
      841 ratplphdgq pnemsqapvl iscadq
//
LOCUS       XP_053924636             841 aa            linear   VRT 09-MAR-2023
DEFINITION  HMG box transcription factor BBX isoform X7 [Cuculus canorus].
ACCESSION   XP_053924636
VERSION     XP_053924636.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068661.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..841
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..841
                     /product="HMG box transcription factor BBX isoform X7"
                     /calculated_mol_wt=93286
     Region          81..149
                     /region_name="HMG-box_HBP2"
                     /note="high mobility group (HMG)-box found in HMG
                     box-containing protein 2 (HBP2) and similar proteins;
                     cd21989"
                     /db_xref="CDD:438805"
     Site            order(81..82,84..88,91..92,99,111..112,115,118..119,126,
                     130,133,137,140)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438805"
     Region          192..353
                     /region_name="DUF2028"
                     /note="Domain of unknown function (DUF2028); pfam09667"
                     /db_xref="CDD:430742"
     CDS             1..841
                     /gene="BBX"
                     /coded_by="XM_054068661.1:83..2608"
                     /db_xref="GeneID:104056172"
ORIGIN      
        1 mkgssrnkdh stegegtgkr pkrkclqwhp llakklldfs eeeeeeeeee didkvpllgt
       61 dcleqdadet eddesseqra rrpmnafllf ckrhrslvrk ehprldnrga tkiladwwav
      121 ldpkekqkyt dmakeykdaf mkanpgykwc patnkpvkaq astitnrkkl wafasdtakd
      181 lpsprkmmkt edmpqlnfgm adptqmggls mlllagehal taqevssnac qsdatnstea
      241 cqksslfqfa eissstsqpg vlgavkqtee salfqfaeis sntsqlsspe pvkhcgksal
      301 fqlaeissst shsgpsdltk qcgtsalfql aemclasegv kmkepgktkv eapqgvgkev
      361 peemeieele katmkdsckg kveqtelekm qnwdkskaee setakcreft slamernpfe
      421 rndnimdmyy spefsvadmn ilglkpekik kkkkknkldr htnekstpkk pckkrqsses
      481 diesvmytie avakgdwgae rlgetlrkkp rpisnvkesv ldtkspkkkv kskekktske
      541 kppettkesk pldflsitps kevpceasdn ikvepltpte dvvpqtlpeq vktedsdcvk
      601 kietcgsrks ersckgalyk tlvsegmlts lranvdrgkr ssgkgnssdh egcwneenwa
      661 fsqsgtsgnk klkktkpkee fvfgknssvp rkkrkigsss seqpksnkep ammheplvgs
      721 qkrkarktki thlvrtadgr vspaggtled kpkelpqstp qktsssetdc nsecsrnaet
      781 eenhsitsdm pavsaffsla alaevaamen vhrsqratpl phdgqpnems qapvliscad
      841 q
//
LOCUS       XP_053924645             921 aa            linear   VRT 09-MAR-2023
DEFINITION  HMG box transcription factor BBX isoform X8 [Cuculus canorus].
ACCESSION   XP_053924645
VERSION     XP_053924645.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068670.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..921
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..921
                     /product="HMG box transcription factor BBX isoform X8"
                     /calculated_mol_wt=102577
     Region          81..149
                     /region_name="HMG-box_HBP2"
                     /note="high mobility group (HMG)-box found in HMG
                     box-containing protein 2 (HBP2) and similar proteins;
                     cd21989"
                     /db_xref="CDD:438805"
     Site            order(81..82,84..88,91..92,99,111..112,115,118..119,126,
                     130,133,137,140)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438805"
     Region          192..353
                     /region_name="DUF2028"
                     /note="Domain of unknown function (DUF2028); pfam09667"
                     /db_xref="CDD:430742"
     CDS             1..921
                     /gene="BBX"
                     /coded_by="XM_054068670.1:285..3050"
                     /db_xref="GeneID:104056172"
ORIGIN      
        1 mkgssrnkdh stegegtgkr pkrkclqwhp llakklldfs eeeeeeeeee didkvpllgt
       61 dcleqdadet eddesseqra rrpmnafllf ckrhrslvrk ehprldnrga tkiladwwav
      121 ldpkekqkyt dmakeykdaf mkanpgykwc patnkpvkaq astitnrkkl wafasdtakd
      181 lpsprkmmkt edmpqlnfgm adptqmggls mlllagehal taqevssnac qsdatnstea
      241 cqksslfqfa eissstsqpg vlgavkqtee salfqfaeis sntsqlsspe pvkhcgksal
      301 fqlaeissst shsgpsdltk qcgtsalfql aemclasegv kmkepgktkv eapqgvgkev
      361 peemeieele katmkdsckg kveqtelekm qnwdkskaee setakcreft slamernpfe
      421 rndnimdmyy spefsvadmn ilglkpekik kkkkknkldr htnekstpkk pckkrqsses
      481 diesvmytie avakgdwgae rlgetlrkkp rpisnvkesv ldtkspkkkv kskekktske
      541 kppettkesk pldflsitps kevpceasdn ikvepltpte dvvpqtlpeq vktedsdcvk
      601 kietcgsrks ersckgalyk tlvsegmlts lranvdrgkr ssgkgnssdh egcwneenwa
      661 fsqsgtsgnk klkktkpkee fvfglaklee efekkfnslp qyspitfdrk nssvprkkrk
      721 igsssseqpk snkgsfqsqk knffykivsk ckhrkklnvp dtailsedrn siesawknki
      781 slsalntpep ammheplvgs qkrkarktki thlvrtadgr vspaggtled kpkelpqstp
      841 qktsssetdc nsecsrnaet eenhsitsdm pavsaffsla alaevaamen vhrsqratpl
      901 phdgqpnems qapvliscad q
//
LOCUS       XP_053924650             921 aa            linear   VRT 09-MAR-2023
DEFINITION  HMG box transcription factor BBX isoform X8 [Cuculus canorus].
ACCESSION   XP_053924650
VERSION     XP_053924650.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068675.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..921
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..921
                     /product="HMG box transcription factor BBX isoform X8"
                     /calculated_mol_wt=102577
     Region          81..149
                     /region_name="HMG-box_HBP2"
                     /note="high mobility group (HMG)-box found in HMG
                     box-containing protein 2 (HBP2) and similar proteins;
                     cd21989"
                     /db_xref="CDD:438805"
     Site            order(81..82,84..88,91..92,99,111..112,115,118..119,126,
                     130,133,137,140)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438805"
     Region          192..353
                     /region_name="DUF2028"
                     /note="Domain of unknown function (DUF2028); pfam09667"
                     /db_xref="CDD:430742"
     CDS             1..921
                     /gene="BBX"
                     /coded_by="XM_054068675.1:198..2963"
                     /db_xref="GeneID:104056172"
ORIGIN      
        1 mkgssrnkdh stegegtgkr pkrkclqwhp llakklldfs eeeeeeeeee didkvpllgt
       61 dcleqdadet eddesseqra rrpmnafllf ckrhrslvrk ehprldnrga tkiladwwav
      121 ldpkekqkyt dmakeykdaf mkanpgykwc patnkpvkaq astitnrkkl wafasdtakd
      181 lpsprkmmkt edmpqlnfgm adptqmggls mlllagehal taqevssnac qsdatnstea
      241 cqksslfqfa eissstsqpg vlgavkqtee salfqfaeis sntsqlsspe pvkhcgksal
      301 fqlaeissst shsgpsdltk qcgtsalfql aemclasegv kmkepgktkv eapqgvgkev
      361 peemeieele katmkdsckg kveqtelekm qnwdkskaee setakcreft slamernpfe
      421 rndnimdmyy spefsvadmn ilglkpekik kkkkknkldr htnekstpkk pckkrqsses
      481 diesvmytie avakgdwgae rlgetlrkkp rpisnvkesv ldtkspkkkv kskekktske
      541 kppettkesk pldflsitps kevpceasdn ikvepltpte dvvpqtlpeq vktedsdcvk
      601 kietcgsrks ersckgalyk tlvsegmlts lranvdrgkr ssgkgnssdh egcwneenwa
      661 fsqsgtsgnk klkktkpkee fvfglaklee efekkfnslp qyspitfdrk nssvprkkrk
      721 igsssseqpk snkgsfqsqk knffykivsk ckhrkklnvp dtailsedrn siesawknki
      781 slsalntpep ammheplvgs qkrkarktki thlvrtadgr vspaggtled kpkelpqstp
      841 qktsssetdc nsecsrnaet eenhsitsdm pavsaffsla alaevaamen vhrsqratpl
      901 phdgqpnems qapvliscad q
//
LOCUS       XP_053924658             921 aa            linear   VRT 09-MAR-2023
DEFINITION  HMG box transcription factor BBX isoform X8 [Cuculus canorus].
ACCESSION   XP_053924658
VERSION     XP_053924658.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068683.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..921
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..921
                     /product="HMG box transcription factor BBX isoform X8"
                     /calculated_mol_wt=102577
     Region          81..149
                     /region_name="HMG-box_HBP2"
                     /note="high mobility group (HMG)-box found in HMG
                     box-containing protein 2 (HBP2) and similar proteins;
                     cd21989"
                     /db_xref="CDD:438805"
     Site            order(81..82,84..88,91..92,99,111..112,115,118..119,126,
                     130,133,137,140)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438805"
     Region          192..353
                     /region_name="DUF2028"
                     /note="Domain of unknown function (DUF2028); pfam09667"
                     /db_xref="CDD:430742"
     CDS             1..921
                     /gene="BBX"
                     /coded_by="XM_054068683.1:118..2883"
                     /db_xref="GeneID:104056172"
ORIGIN      
        1 mkgssrnkdh stegegtgkr pkrkclqwhp llakklldfs eeeeeeeeee didkvpllgt
       61 dcleqdadet eddesseqra rrpmnafllf ckrhrslvrk ehprldnrga tkiladwwav
      121 ldpkekqkyt dmakeykdaf mkanpgykwc patnkpvkaq astitnrkkl wafasdtakd
      181 lpsprkmmkt edmpqlnfgm adptqmggls mlllagehal taqevssnac qsdatnstea
      241 cqksslfqfa eissstsqpg vlgavkqtee salfqfaeis sntsqlsspe pvkhcgksal
      301 fqlaeissst shsgpsdltk qcgtsalfql aemclasegv kmkepgktkv eapqgvgkev
      361 peemeieele katmkdsckg kveqtelekm qnwdkskaee setakcreft slamernpfe
      421 rndnimdmyy spefsvadmn ilglkpekik kkkkknkldr htnekstpkk pckkrqsses
      481 diesvmytie avakgdwgae rlgetlrkkp rpisnvkesv ldtkspkkkv kskekktske
      541 kppettkesk pldflsitps kevpceasdn ikvepltpte dvvpqtlpeq vktedsdcvk
      601 kietcgsrks ersckgalyk tlvsegmlts lranvdrgkr ssgkgnssdh egcwneenwa
      661 fsqsgtsgnk klkktkpkee fvfglaklee efekkfnslp qyspitfdrk nssvprkkrk
      721 igsssseqpk snkgsfqsqk knffykivsk ckhrkklnvp dtailsedrn siesawknki
      781 slsalntpep ammheplvgs qkrkarktki thlvrtadgr vspaggtled kpkelpqstp
      841 qktsssetdc nsecsrnaet eenhsitsdm pavsaffsla alaevaamen vhrsqratpl
      901 phdgqpnems qapvliscad q
//
LOCUS       XP_053924669             921 aa            linear   VRT 09-MAR-2023
DEFINITION  HMG box transcription factor BBX isoform X8 [Cuculus canorus].
ACCESSION   XP_053924669
VERSION     XP_053924669.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068694.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..921
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..921
                     /product="HMG box transcription factor BBX isoform X8"
                     /calculated_mol_wt=102577
     Region          81..149
                     /region_name="HMG-box_HBP2"
                     /note="high mobility group (HMG)-box found in HMG
                     box-containing protein 2 (HBP2) and similar proteins;
                     cd21989"
                     /db_xref="CDD:438805"
     Site            order(81..82,84..88,91..92,99,111..112,115,118..119,126,
                     130,133,137,140)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438805"
     Region          192..353
                     /region_name="DUF2028"
                     /note="Domain of unknown function (DUF2028); pfam09667"
                     /db_xref="CDD:430742"
     CDS             1..921
                     /gene="BBX"
                     /coded_by="XM_054068694.1:341..3106"
                     /db_xref="GeneID:104056172"
ORIGIN      
        1 mkgssrnkdh stegegtgkr pkrkclqwhp llakklldfs eeeeeeeeee didkvpllgt
       61 dcleqdadet eddesseqra rrpmnafllf ckrhrslvrk ehprldnrga tkiladwwav
      121 ldpkekqkyt dmakeykdaf mkanpgykwc patnkpvkaq astitnrkkl wafasdtakd
      181 lpsprkmmkt edmpqlnfgm adptqmggls mlllagehal taqevssnac qsdatnstea
      241 cqksslfqfa eissstsqpg vlgavkqtee salfqfaeis sntsqlsspe pvkhcgksal
      301 fqlaeissst shsgpsdltk qcgtsalfql aemclasegv kmkepgktkv eapqgvgkev
      361 peemeieele katmkdsckg kveqtelekm qnwdkskaee setakcreft slamernpfe
      421 rndnimdmyy spefsvadmn ilglkpekik kkkkknkldr htnekstpkk pckkrqsses
      481 diesvmytie avakgdwgae rlgetlrkkp rpisnvkesv ldtkspkkkv kskekktske
      541 kppettkesk pldflsitps kevpceasdn ikvepltpte dvvpqtlpeq vktedsdcvk
      601 kietcgsrks ersckgalyk tlvsegmlts lranvdrgkr ssgkgnssdh egcwneenwa
      661 fsqsgtsgnk klkktkpkee fvfglaklee efekkfnslp qyspitfdrk nssvprkkrk
      721 igsssseqpk snkgsfqsqk knffykivsk ckhrkklnvp dtailsedrn siesawknki
      781 slsalntpep ammheplvgs qkrkarktki thlvrtadgr vspaggtled kpkelpqstp
      841 qktsssetdc nsecsrnaet eenhsitsdm pavsaffsla alaevaamen vhrsqratpl
      901 phdgqpnems qapvliscad q
//
LOCUS       XP_053924677             921 aa            linear   VRT 09-MAR-2023
DEFINITION  HMG box transcription factor BBX isoform X8 [Cuculus canorus].
ACCESSION   XP_053924677
VERSION     XP_053924677.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068702.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..921
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..921
                     /product="HMG box transcription factor BBX isoform X8"
                     /calculated_mol_wt=102577
     Region          81..149
                     /region_name="HMG-box_HBP2"
                     /note="high mobility group (HMG)-box found in HMG
                     box-containing protein 2 (HBP2) and similar proteins;
                     cd21989"
                     /db_xref="CDD:438805"
     Site            order(81..82,84..88,91..92,99,111..112,115,118..119,126,
                     130,133,137,140)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438805"
     Region          192..353
                     /region_name="DUF2028"
                     /note="Domain of unknown function (DUF2028); pfam09667"
                     /db_xref="CDD:430742"
     CDS             1..921
                     /gene="BBX"
                     /coded_by="XM_054068702.1:222..2987"
                     /db_xref="GeneID:104056172"
ORIGIN      
        1 mkgssrnkdh stegegtgkr pkrkclqwhp llakklldfs eeeeeeeeee didkvpllgt
       61 dcleqdadet eddesseqra rrpmnafllf ckrhrslvrk ehprldnrga tkiladwwav
      121 ldpkekqkyt dmakeykdaf mkanpgykwc patnkpvkaq astitnrkkl wafasdtakd
      181 lpsprkmmkt edmpqlnfgm adptqmggls mlllagehal taqevssnac qsdatnstea
      241 cqksslfqfa eissstsqpg vlgavkqtee salfqfaeis sntsqlsspe pvkhcgksal
      301 fqlaeissst shsgpsdltk qcgtsalfql aemclasegv kmkepgktkv eapqgvgkev
      361 peemeieele katmkdsckg kveqtelekm qnwdkskaee setakcreft slamernpfe
      421 rndnimdmyy spefsvadmn ilglkpekik kkkkknkldr htnekstpkk pckkrqsses
      481 diesvmytie avakgdwgae rlgetlrkkp rpisnvkesv ldtkspkkkv kskekktske
      541 kppettkesk pldflsitps kevpceasdn ikvepltpte dvvpqtlpeq vktedsdcvk
      601 kietcgsrks ersckgalyk tlvsegmlts lranvdrgkr ssgkgnssdh egcwneenwa
      661 fsqsgtsgnk klkktkpkee fvfglaklee efekkfnslp qyspitfdrk nssvprkkrk
      721 igsssseqpk snkgsfqsqk knffykivsk ckhrkklnvp dtailsedrn siesawknki
      781 slsalntpep ammheplvgs qkrkarktki thlvrtadgr vspaggtled kpkelpqstp
      841 qktsssetdc nsecsrnaet eenhsitsdm pavsaffsla alaevaamen vhrsqratpl
      901 phdgqpnems qapvliscad q
//
LOCUS       XP_053924686             921 aa            linear   VRT 09-MAR-2023
DEFINITION  HMG box transcription factor BBX isoform X8 [Cuculus canorus].
ACCESSION   XP_053924686
VERSION     XP_053924686.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068711.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..921
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..921
                     /product="HMG box transcription factor BBX isoform X8"
                     /calculated_mol_wt=102577
     Region          81..149
                     /region_name="HMG-box_HBP2"
                     /note="high mobility group (HMG)-box found in HMG
                     box-containing protein 2 (HBP2) and similar proteins;
                     cd21989"
                     /db_xref="CDD:438805"
     Site            order(81..82,84..88,91..92,99,111..112,115,118..119,126,
                     130,133,137,140)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438805"
     Region          192..353
                     /region_name="DUF2028"
                     /note="Domain of unknown function (DUF2028); pfam09667"
                     /db_xref="CDD:430742"
     CDS             1..921
                     /gene="BBX"
                     /coded_by="XM_054068711.1:205..2970"
                     /db_xref="GeneID:104056172"
ORIGIN      
        1 mkgssrnkdh stegegtgkr pkrkclqwhp llakklldfs eeeeeeeeee didkvpllgt
       61 dcleqdadet eddesseqra rrpmnafllf ckrhrslvrk ehprldnrga tkiladwwav
      121 ldpkekqkyt dmakeykdaf mkanpgykwc patnkpvkaq astitnrkkl wafasdtakd
      181 lpsprkmmkt edmpqlnfgm adptqmggls mlllagehal taqevssnac qsdatnstea
      241 cqksslfqfa eissstsqpg vlgavkqtee salfqfaeis sntsqlsspe pvkhcgksal
      301 fqlaeissst shsgpsdltk qcgtsalfql aemclasegv kmkepgktkv eapqgvgkev
      361 peemeieele katmkdsckg kveqtelekm qnwdkskaee setakcreft slamernpfe
      421 rndnimdmyy spefsvadmn ilglkpekik kkkkknkldr htnekstpkk pckkrqsses
      481 diesvmytie avakgdwgae rlgetlrkkp rpisnvkesv ldtkspkkkv kskekktske
      541 kppettkesk pldflsitps kevpceasdn ikvepltpte dvvpqtlpeq vktedsdcvk
      601 kietcgsrks ersckgalyk tlvsegmlts lranvdrgkr ssgkgnssdh egcwneenwa
      661 fsqsgtsgnk klkktkpkee fvfglaklee efekkfnslp qyspitfdrk nssvprkkrk
      721 igsssseqpk snkgsfqsqk knffykivsk ckhrkklnvp dtailsedrn siesawknki
      781 slsalntpep ammheplvgs qkrkarktki thlvrtadgr vspaggtled kpkelpqstp
      841 qktsssetdc nsecsrnaet eenhsitsdm pavsaffsla alaevaamen vhrsqratpl
      901 phdgqpnems qapvliscad q
//
LOCUS       XP_053924696             921 aa            linear   VRT 09-MAR-2023
DEFINITION  HMG box transcription factor BBX isoform X8 [Cuculus canorus].
ACCESSION   XP_053924696
VERSION     XP_053924696.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068721.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..921
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..921
                     /product="HMG box transcription factor BBX isoform X8"
                     /calculated_mol_wt=102577
     Region          81..149
                     /region_name="HMG-box_HBP2"
                     /note="high mobility group (HMG)-box found in HMG
                     box-containing protein 2 (HBP2) and similar proteins;
                     cd21989"
                     /db_xref="CDD:438805"
     Site            order(81..82,84..88,91..92,99,111..112,115,118..119,126,
                     130,133,137,140)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438805"
     Region          192..353
                     /region_name="DUF2028"
                     /note="Domain of unknown function (DUF2028); pfam09667"
                     /db_xref="CDD:430742"
     CDS             1..921
                     /gene="BBX"
                     /coded_by="XM_054068721.1:309..3074"
                     /db_xref="GeneID:104056172"
ORIGIN      
        1 mkgssrnkdh stegegtgkr pkrkclqwhp llakklldfs eeeeeeeeee didkvpllgt
       61 dcleqdadet eddesseqra rrpmnafllf ckrhrslvrk ehprldnrga tkiladwwav
      121 ldpkekqkyt dmakeykdaf mkanpgykwc patnkpvkaq astitnrkkl wafasdtakd
      181 lpsprkmmkt edmpqlnfgm adptqmggls mlllagehal taqevssnac qsdatnstea
      241 cqksslfqfa eissstsqpg vlgavkqtee salfqfaeis sntsqlsspe pvkhcgksal
      301 fqlaeissst shsgpsdltk qcgtsalfql aemclasegv kmkepgktkv eapqgvgkev
      361 peemeieele katmkdsckg kveqtelekm qnwdkskaee setakcreft slamernpfe
      421 rndnimdmyy spefsvadmn ilglkpekik kkkkknkldr htnekstpkk pckkrqsses
      481 diesvmytie avakgdwgae rlgetlrkkp rpisnvkesv ldtkspkkkv kskekktske
      541 kppettkesk pldflsitps kevpceasdn ikvepltpte dvvpqtlpeq vktedsdcvk
      601 kietcgsrks ersckgalyk tlvsegmlts lranvdrgkr ssgkgnssdh egcwneenwa
      661 fsqsgtsgnk klkktkpkee fvfglaklee efekkfnslp qyspitfdrk nssvprkkrk
      721 igsssseqpk snkgsfqsqk knffykivsk ckhrkklnvp dtailsedrn siesawknki
      781 slsalntpep ammheplvgs qkrkarktki thlvrtadgr vspaggtled kpkelpqstp
      841 qktsssetdc nsecsrnaet eenhsitsdm pavsaffsla alaevaamen vhrsqratpl
      901 phdgqpnems qapvliscad q
//
LOCUS       XP_053924704             921 aa            linear   VRT 09-MAR-2023
DEFINITION  HMG box transcription factor BBX isoform X8 [Cuculus canorus].
ACCESSION   XP_053924704
VERSION     XP_053924704.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068729.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..921
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..921
                     /product="HMG box transcription factor BBX isoform X8"
                     /calculated_mol_wt=102577
     Region          81..149
                     /region_name="HMG-box_HBP2"
                     /note="high mobility group (HMG)-box found in HMG
                     box-containing protein 2 (HBP2) and similar proteins;
                     cd21989"
                     /db_xref="CDD:438805"
     Site            order(81..82,84..88,91..92,99,111..112,115,118..119,126,
                     130,133,137,140)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438805"
     Region          192..353
                     /region_name="DUF2028"
                     /note="Domain of unknown function (DUF2028); pfam09667"
                     /db_xref="CDD:430742"
     CDS             1..921
                     /gene="BBX"
                     /coded_by="XM_054068729.1:287..3052"
                     /db_xref="GeneID:104056172"
ORIGIN      
        1 mkgssrnkdh stegegtgkr pkrkclqwhp llakklldfs eeeeeeeeee didkvpllgt
       61 dcleqdadet eddesseqra rrpmnafllf ckrhrslvrk ehprldnrga tkiladwwav
      121 ldpkekqkyt dmakeykdaf mkanpgykwc patnkpvkaq astitnrkkl wafasdtakd
      181 lpsprkmmkt edmpqlnfgm adptqmggls mlllagehal taqevssnac qsdatnstea
      241 cqksslfqfa eissstsqpg vlgavkqtee salfqfaeis sntsqlsspe pvkhcgksal
      301 fqlaeissst shsgpsdltk qcgtsalfql aemclasegv kmkepgktkv eapqgvgkev
      361 peemeieele katmkdsckg kveqtelekm qnwdkskaee setakcreft slamernpfe
      421 rndnimdmyy spefsvadmn ilglkpekik kkkkknkldr htnekstpkk pckkrqsses
      481 diesvmytie avakgdwgae rlgetlrkkp rpisnvkesv ldtkspkkkv kskekktske
      541 kppettkesk pldflsitps kevpceasdn ikvepltpte dvvpqtlpeq vktedsdcvk
      601 kietcgsrks ersckgalyk tlvsegmlts lranvdrgkr ssgkgnssdh egcwneenwa
      661 fsqsgtsgnk klkktkpkee fvfglaklee efekkfnslp qyspitfdrk nssvprkkrk
      721 igsssseqpk snkgsfqsqk knffykivsk ckhrkklnvp dtailsedrn siesawknki
      781 slsalntpep ammheplvgs qkrkarktki thlvrtadgr vspaggtled kpkelpqstp
      841 qktsssetdc nsecsrnaet eenhsitsdm pavsaffsla alaevaamen vhrsqratpl
      901 phdgqpnems qapvliscad q
//
LOCUS       XP_053924710             921 aa            linear   VRT 09-MAR-2023
DEFINITION  HMG box transcription factor BBX isoform X8 [Cuculus canorus].
ACCESSION   XP_053924710
VERSION     XP_053924710.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068735.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..921
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..921
                     /product="HMG box transcription factor BBX isoform X8"
                     /calculated_mol_wt=102577
     Region          81..149
                     /region_name="HMG-box_HBP2"
                     /note="high mobility group (HMG)-box found in HMG
                     box-containing protein 2 (HBP2) and similar proteins;
                     cd21989"
                     /db_xref="CDD:438805"
     Site            order(81..82,84..88,91..92,99,111..112,115,118..119,126,
                     130,133,137,140)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438805"
     Region          192..353
                     /region_name="DUF2028"
                     /note="Domain of unknown function (DUF2028); pfam09667"
                     /db_xref="CDD:430742"
     CDS             1..921
                     /gene="BBX"
                     /coded_by="XM_054068735.1:254..3019"
                     /db_xref="GeneID:104056172"
ORIGIN      
        1 mkgssrnkdh stegegtgkr pkrkclqwhp llakklldfs eeeeeeeeee didkvpllgt
       61 dcleqdadet eddesseqra rrpmnafllf ckrhrslvrk ehprldnrga tkiladwwav
      121 ldpkekqkyt dmakeykdaf mkanpgykwc patnkpvkaq astitnrkkl wafasdtakd
      181 lpsprkmmkt edmpqlnfgm adptqmggls mlllagehal taqevssnac qsdatnstea
      241 cqksslfqfa eissstsqpg vlgavkqtee salfqfaeis sntsqlsspe pvkhcgksal
      301 fqlaeissst shsgpsdltk qcgtsalfql aemclasegv kmkepgktkv eapqgvgkev
      361 peemeieele katmkdsckg kveqtelekm qnwdkskaee setakcreft slamernpfe
      421 rndnimdmyy spefsvadmn ilglkpekik kkkkknkldr htnekstpkk pckkrqsses
      481 diesvmytie avakgdwgae rlgetlrkkp rpisnvkesv ldtkspkkkv kskekktske
      541 kppettkesk pldflsitps kevpceasdn ikvepltpte dvvpqtlpeq vktedsdcvk
      601 kietcgsrks ersckgalyk tlvsegmlts lranvdrgkr ssgkgnssdh egcwneenwa
      661 fsqsgtsgnk klkktkpkee fvfglaklee efekkfnslp qyspitfdrk nssvprkkrk
      721 igsssseqpk snkgsfqsqk knffykivsk ckhrkklnvp dtailsedrn siesawknki
      781 slsalntpep ammheplvgs qkrkarktki thlvrtadgr vspaggtled kpkelpqstp
      841 qktsssetdc nsecsrnaet eenhsitsdm pavsaffsla alaevaamen vhrsqratpl
      901 phdgqpnems qapvliscad q
//
LOCUS       XP_053924721             348 aa            linear   VRT 09-MAR-2023
DEFINITION  leukocyte surface antigen CD47 isoform X1 [Cuculus canorus].
ACCESSION   XP_053924721
VERSION     XP_053924721.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068746.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..348
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..348
                     /product="leukocyte surface antigen CD47 isoform X1"
                     /calculated_mol_wt=37496
     Region          20..132
                     /region_name="IgV_CD47"
                     /note="Immunoglobulin variable region (IgV) in Cluster of
                     Differentiation (CD) 47; cd16090"
                     /db_xref="CDD:409511"
     Region          20..44
                     /region_name="FR1"
                     /note="FR1 [structural motif]"
                     /db_xref="CDD:409511"
     Region          20..23
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409511"
     Region          26..30
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409511"
     Region          37..44
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409511"
     Region          45..53
                     /region_name="CDR1"
                     /note="CDR1 [structural motif]"
                     /db_xref="CDD:409511"
     Region          54..62
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409511"
     Site            order(55,57,59,114,123)
                     /site_type="other"
                     /note="SIRP-CD47 complex [polypeptide binding]"
                     /db_xref="CDD:409511"
     Region          55..60
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409511"
     Region          63..77
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409511"
     Region          63..70
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409511"
     Region          73..77
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409511"
     Region          79..116
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409511"
     Region          83..86
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409511"
     Region          95..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409511"
     Region          110..117
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409511"
     Region          117..120
                     /region_name="CDR3"
                     /note="CDR3 [structural motif]"
                     /db_xref="CDD:409511"
     Region          120..130
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409511"
     Region          121..132
                     /region_name="FR4"
                     /note="FR4 [structural motif]"
                     /db_xref="CDD:409511"
     Region          143..290
                     /region_name="CD47"
                     /note="CD47 transmembrane region; pfam04549"
                     /db_xref="CDD:367985"
     CDS             1..348
                     /gene="CD47"
                     /coded_by="XM_054068746.1:99..1145"
                     /db_xref="GeneID:104055997"
ORIGIN      
        1 mwllfacvli salrhgsaql elttrspves tscnrtvtlp cyvvdlklts akgmfvtwqk
       61 hdklifsydg atqeffrdpv vpsanlaslv dlpkgvaslt fkngegvdgn ysckvtvsns
      121 egkitvelrs itgpwfvlme rafiialllf vaglclaqfi fvaikyglgp qkkicfigtg
      181 fiftvaavvg ivffvqdgyn tqsqagfgll vvpvvvavpl qylmfgivfd slpkatfvli
      241 glqilgyiia vvgfalsvsa cpplhasvvi aglavmaiat llslayvlim gsrmkdhprp
      301 getfylqqav yggffgchge vektpagtra sasiltvrtr acrwrgrr
//
LOCUS       XP_053924724             328 aa            linear   VRT 09-MAR-2023
DEFINITION  leukocyte surface antigen CD47 isoform X2 [Cuculus canorus].
ACCESSION   XP_053924724
VERSION     XP_053924724.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068749.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..328
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..328
                     /product="leukocyte surface antigen CD47 isoform X2"
                     /calculated_mol_wt=35363
     Region          20..132
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          37..41
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409511"
     Region          55..59
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409511"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409511"
     Region          110..115
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409511"
     Region          123..126
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409511"
     Region          143..290
                     /region_name="CD47"
                     /note="CD47 transmembrane region; pfam04549"
                     /db_xref="CDD:367985"
     CDS             1..328
                     /gene="CD47"
                     /coded_by="XM_054068749.1:99..1085"
                     /db_xref="GeneID:104055997"
ORIGIN      
        1 mwllfacvli salrhgsaql elttrspves tscnrtvtlp cyvvdlklts akgmfvtwqk
       61 hdklifsydg atqeffrdpv vpsanlaslv dlpkgvaslt fkngegvdgn ysckvtvsns
      121 egkitvelrs itgpwfvlme rafiialllf vaglclaqfi fvaikyglgp qkkicfigtg
      181 fiftvaavvg ivffvqdgyn tqsqagfgll vvpvvvavpl qylmfgivfd slpkatfvli
      241 glqilgyiia vvgfalsvsa cpplhasvvi aglavmaiat llslayvlim gsrmkdhprp
      301 gkaveeplne ltsyviheky tvvdtpwp
//
LOCUS       XP_053924730             317 aa            linear   VRT 09-MAR-2023
DEFINITION  leukocyte surface antigen CD47 isoform X3 [Cuculus canorus].
ACCESSION   XP_053924730
VERSION     XP_053924730.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068755.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..317
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..317
                     /product="leukocyte surface antigen CD47 isoform X3"
                     /calculated_mol_wt=33947
     Region          20..132
                     /region_name="IgV_CD47"
                     /note="Immunoglobulin variable region (IgV) in Cluster of
                     Differentiation (CD) 47; cd16090"
                     /db_xref="CDD:409511"
     Region          20..44
                     /region_name="FR1"
                     /note="FR1 [structural motif]"
                     /db_xref="CDD:409511"
     Region          20..23
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409511"
     Region          26..30
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409511"
     Region          37..44
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409511"
     Region          45..53
                     /region_name="CDR1"
                     /note="CDR1 [structural motif]"
                     /db_xref="CDD:409511"
     Region          54..62
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409511"
     Site            order(55,57,59,114,123)
                     /site_type="other"
                     /note="SIRP-CD47 complex [polypeptide binding]"
                     /db_xref="CDD:409511"
     Region          55..60
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409511"
     Region          63..77
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409511"
     Region          63..70
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409511"
     Region          73..77
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409511"
     Region          79..116
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409511"
     Region          83..86
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409511"
     Region          95..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409511"
     Region          110..117
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409511"
     Region          117..120
                     /region_name="CDR3"
                     /note="CDR3 [structural motif]"
                     /db_xref="CDD:409511"
     Region          120..130
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409511"
     Region          121..132
                     /region_name="FR4"
                     /note="FR4 [structural motif]"
                     /db_xref="CDD:409511"
     Region          143..290
                     /region_name="CD47"
                     /note="CD47 transmembrane region; pfam04549"
                     /db_xref="CDD:367985"
     CDS             1..317
                     /gene="CD47"
                     /coded_by="XM_054068755.1:99..1052"
                     /db_xref="GeneID:104055997"
ORIGIN      
        1 mwllfacvli salrhgsaql elttrspves tscnrtvtlp cyvvdlklts akgmfvtwqk
       61 hdklifsydg atqeffrdpv vpsanlaslv dlpkgvaslt fkngegvdgn ysckvtvsns
      121 egkitvelrs itgpwfvlme rafiialllf vaglclaqfi fvaikyglgp qkkicfigtg
      181 fiftvaavvg ivffvqdgyn tqsqagfgll vvpvvvavpl qylmfgivfd slpkatfvli
      241 glqilgyiia vvgfalsvsa cpplhasvvi aglavmaiat llslayvlim gsrmkdhprp
      301 gkaveeplnd akgvmle
//
LOCUS       XP_053924739             313 aa            linear   VRT 09-MAR-2023
DEFINITION  leukocyte surface antigen CD47 isoform X4 [Cuculus canorus].
ACCESSION   XP_053924739
VERSION     XP_053924739.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068764.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..313
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..313
                     /product="leukocyte surface antigen CD47 isoform X4"
                     /calculated_mol_wt=33726
     Region          20..132
                     /region_name="IgV_CD47"
                     /note="Immunoglobulin variable region (IgV) in Cluster of
                     Differentiation (CD) 47; cd16090"
                     /db_xref="CDD:409511"
     Region          20..44
                     /region_name="FR1"
                     /note="FR1 [structural motif]"
                     /db_xref="CDD:409511"
     Region          20..23
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409511"
     Region          26..30
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409511"
     Region          37..44
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409511"
     Region          45..53
                     /region_name="CDR1"
                     /note="CDR1 [structural motif]"
                     /db_xref="CDD:409511"
     Region          54..62
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409511"
     Site            order(55,57,59,114,123)
                     /site_type="other"
                     /note="SIRP-CD47 complex [polypeptide binding]"
                     /db_xref="CDD:409511"
     Region          55..60
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409511"
     Region          63..77
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409511"
     Region          63..70
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409511"
     Region          73..77
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409511"
     Region          79..116
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409511"
     Region          83..86
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409511"
     Region          95..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409511"
     Region          110..117
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409511"
     Region          117..120
                     /region_name="CDR3"
                     /note="CDR3 [structural motif]"
                     /db_xref="CDD:409511"
     Region          120..130
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409511"
     Region          121..132
                     /region_name="FR4"
                     /note="FR4 [structural motif]"
                     /db_xref="CDD:409511"
     Region          143..290
                     /region_name="CD47"
                     /note="CD47 transmembrane region; pfam04549"
                     /db_xref="CDD:367985"
     CDS             1..313
                     /gene="CD47"
                     /coded_by="XM_054068764.1:99..1040"
                     /db_xref="GeneID:104055997"
ORIGIN      
        1 mwllfacvli salrhgsaql elttrspves tscnrtvtlp cyvvdlklts akgmfvtwqk
       61 hdklifsydg atqeffrdpv vpsanlaslv dlpkgvaslt fkngegvdgn ysckvtvsns
      121 egkitvelrs itgpwfvlme rafiialllf vaglclaqfi fvaikyglgp qkkicfigtg
      181 fiftvaavvg ivffvqdgyn tqsqagfgll vvpvvvavpl qylmfgivfd slpkatfvli
      241 glqilgyiia vvgfalsvsa cpplhasvvi aglavmaiat llslayvlim gsrmkdhprp
      301 gnhyllymsi rvi
//
LOCUS       XP_053924748             305 aa            linear   VRT 09-MAR-2023
DEFINITION  leukocyte surface antigen CD47 isoform X5 [Cuculus canorus].
ACCESSION   XP_053924748
VERSION     XP_053924748.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068773.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="leukocyte surface antigen CD47 isoform X5"
                     /calculated_mol_wt=32739
     Region          20..132
                     /region_name="IgV_CD47"
                     /note="Immunoglobulin variable region (IgV) in Cluster of
                     Differentiation (CD) 47; cd16090"
                     /db_xref="CDD:409511"
     Region          20..44
                     /region_name="FR1"
                     /note="FR1 [structural motif]"
                     /db_xref="CDD:409511"
     Region          20..23
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409511"
     Region          26..30
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409511"
     Region          37..44
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409511"
     Region          45..53
                     /region_name="CDR1"
                     /note="CDR1 [structural motif]"
                     /db_xref="CDD:409511"
     Region          54..62
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409511"
     Site            order(55,57,59,114,123)
                     /site_type="other"
                     /note="SIRP-CD47 complex [polypeptide binding]"
                     /db_xref="CDD:409511"
     Region          55..60
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409511"
     Region          63..77
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409511"
     Region          63..70
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409511"
     Region          73..77
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409511"
     Region          79..116
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409511"
     Region          83..86
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409511"
     Region          95..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409511"
     Region          110..117
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409511"
     Region          117..120
                     /region_name="CDR3"
                     /note="CDR3 [structural motif]"
                     /db_xref="CDD:409511"
     Region          120..130
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409511"
     Region          121..132
                     /region_name="FR4"
                     /note="FR4 [structural motif]"
                     /db_xref="CDD:409511"
     Region          143..290
                     /region_name="CD47"
                     /note="CD47 transmembrane region; pfam04549"
                     /db_xref="CDD:367985"
     CDS             1..305
                     /gene="CD47"
                     /coded_by="XM_054068773.1:99..1016"
                     /db_xref="GeneID:104055997"
ORIGIN      
        1 mwllfacvli salrhgsaql elttrspves tscnrtvtlp cyvvdlklts akgmfvtwqk
       61 hdklifsydg atqeffrdpv vpsanlaslv dlpkgvaslt fkngegvdgn ysckvtvsns
      121 egkitvelrs itgpwfvlme rafiialllf vaglclaqfi fvaikyglgp qkkicfigtg
      181 fiftvaavvg ivffvqdgyn tqsqagfgll vvpvvvavpl qylmfgivfd slpkatfvli
      241 glqilgyiia vvgfalsvsa cpplhasvvi aglavmaiat llslayvlim gsrmkdhprp
      301 gmqke
//
LOCUS       XP_053924752             302 aa            linear   VRT 09-MAR-2023
DEFINITION  leukocyte surface antigen CD47 isoform X6 [Cuculus canorus].
ACCESSION   XP_053924752
VERSION     XP_053924752.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068777.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..302
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..302
                     /product="leukocyte surface antigen CD47 isoform X6"
                     /calculated_mol_wt=32337
     Region          20..132
                     /region_name="IgV_CD47"
                     /note="Immunoglobulin variable region (IgV) in Cluster of
                     Differentiation (CD) 47; cd16090"
                     /db_xref="CDD:409511"
     Region          20..44
                     /region_name="FR1"
                     /note="FR1 [structural motif]"
                     /db_xref="CDD:409511"
     Region          20..23
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409511"
     Region          26..30
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409511"
     Region          37..44
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409511"
     Region          45..53
                     /region_name="CDR1"
                     /note="CDR1 [structural motif]"
                     /db_xref="CDD:409511"
     Region          54..62
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409511"
     Site            order(55,57,59,114,123)
                     /site_type="other"
                     /note="SIRP-CD47 complex [polypeptide binding]"
                     /db_xref="CDD:409511"
     Region          55..60
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409511"
     Region          63..77
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409511"
     Region          63..70
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409511"
     Region          73..77
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409511"
     Region          79..116
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409511"
     Region          83..86
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409511"
     Region          95..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409511"
     Region          110..117
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409511"
     Region          117..120
                     /region_name="CDR3"
                     /note="CDR3 [structural motif]"
                     /db_xref="CDD:409511"
     Region          120..130
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409511"
     Region          121..132
                     /region_name="FR4"
                     /note="FR4 [structural motif]"
                     /db_xref="CDD:409511"
     Region          143..290
                     /region_name="CD47"
                     /note="CD47 transmembrane region; pfam04549"
                     /db_xref="CDD:367985"
     CDS             1..302
                     /gene="CD47"
                     /coded_by="XM_054068777.1:99..1007"
                     /db_xref="GeneID:104055997"
ORIGIN      
        1 mwllfacvli salrhgsaql elttrspves tscnrtvtlp cyvvdlklts akgmfvtwqk
       61 hdklifsydg atqeffrdpv vpsanlaslv dlpkgvaslt fkngegvdgn ysckvtvsns
      121 egkitvelrs itgpwfvlme rafiialllf vaglclaqfi fvaikyglgp qkkicfigtg
      181 fiftvaavvg ivffvqdgyn tqsqagfgll vvpvvvavpl qylmfgivfd slpkatfvli
      241 glqilgyiia vvgfalsvsa cpplhasvvi aglavmaiat llslayvlim gsrmkdhprp
      301 gn
//
LOCUS       XP_053924762             917 aa            linear   VRT 09-MAR-2023
DEFINITION  protein O-mannosyl-transferase TMTC3 [Cuculus canorus].
ACCESSION   XP_053924762
VERSION     XP_053924762.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068787.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..917
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..917
                     /product="protein O-mannosyl-transferase TMTC3"
                     /calculated_mol_wt=103671
     Region          258..331
                     /region_name="TMTC_DUF1736"
                     /note="Protein O-mannosyl-transferase TMTC, DUF1736;
                     pfam08409"
                     /db_xref="CDD:462468"
     Region          446..474
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          449..730
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          479..523
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          530..557
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(532..533,536,538,540,564,567..568,571..572,574..575,
                     598,601..602,605..606,609)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          562..592
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          597..625
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          666..804
                     /region_name="BepA"
                     /note="Outer membrane protein chaperone/metalloprotease
                     BepA/YfgC, contains M48 and TPR domains [Cell
                     wall/membrane/envelope biogenesis, Posttranslational
                     modification, protein turnover, chaperones]; COG4783"
                     /db_xref="CDD:443813"
     Region          668..697
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          702..730
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          736..765
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          770..800
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..917
                     /gene="TMTC3"
                     /coded_by="XM_054068787.1:331..3084"
                     /db_xref="GeneID:104058431"
ORIGIN      
        1 madvslkeaa livgvvaacy wnslfcgfvf ddvsaildnk dlhpstplkn lfqndfwgtp
       61 mseershksy rpltvltfrl nylfselnav syhflnlvfh vvvcivflkv cklfldnrss
      121 lvaallfavh pihteavtgv vgraellssi fflaaflsyt kskgpnntiv wtpiavtvfl
      181 vavatlckeq gitvvgiccv yevfiaqgyt lpvlldtavq ilrgkgsipf smlqtllkli
      241 vlmfstlllv vvrvqviqsq lpvftrfdnp aavspsparq ltfnyllpvn awlllnpsel
      301 ccdwtmgtip lveslldvrn vatltffcfl gslivfslry pgdsskavlm alcllvlpfi
      361 pasnlffpvg fvvaervlyv psmgfcilva hgwkklsnks vlrkiswvcl avvlfthalk
      421 tlhrnwdwes eytlfmsalk vnknnaklwn nvghalenek nferalqffi qatqvqpddi
      481 gahmnvgrty knlnktkeae esymiakslm pqiipgkkya arvapnhlnv yinlanlira
      541 nesrleeadq lyrqaismrp dfkqayisrg elllkmnkpl kakeaylral eldrtnadlw
      601 ynlaivyiel kdptealknf nralelnpth klalfnsall mqesgdarlr peakqrllhy
      661 vkeepqdang yfnlgmlamd dkkdveaetw mkkairlqpn frsalfnlal lysqtakelm
      721 alpvledllr yypdhtkgli lkgdilmnqk kdivgakmcf ekileldpnn vqgkhnlcvv
      781 yfeerdlika ekclvetlal apheeyiqrh lnivrskias lsateqlspp adgtvtaaat
      841 ekknslqnlk evkteqkntq ttvennkqys knkkqtqknk idketpkkst kemkdiekkr
      901 vaalkrleei erilnge
//
LOCUS       XP_053924772             917 aa            linear   VRT 09-MAR-2023
DEFINITION  protein O-mannosyl-transferase TMTC3 [Cuculus canorus].
ACCESSION   XP_053924772
VERSION     XP_053924772.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068797.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..917
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..917
                     /product="protein O-mannosyl-transferase TMTC3"
                     /calculated_mol_wt=103671
     Region          258..331
                     /region_name="TMTC_DUF1736"
                     /note="Protein O-mannosyl-transferase TMTC, DUF1736;
                     pfam08409"
                     /db_xref="CDD:462468"
     Region          446..474
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          449..730
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          479..523
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          530..557
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(532..533,536,538,540,564,567..568,571..572,574..575,
                     598,601..602,605..606,609)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          562..592
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          597..625
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          666..804
                     /region_name="BepA"
                     /note="Outer membrane protein chaperone/metalloprotease
                     BepA/YfgC, contains M48 and TPR domains [Cell
                     wall/membrane/envelope biogenesis, Posttranslational
                     modification, protein turnover, chaperones]; COG4783"
                     /db_xref="CDD:443813"
     Region          668..697
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          702..730
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          736..765
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          770..800
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..917
                     /gene="TMTC3"
                     /coded_by="XM_054068797.1:327..3080"
                     /db_xref="GeneID:104058431"
ORIGIN      
        1 madvslkeaa livgvvaacy wnslfcgfvf ddvsaildnk dlhpstplkn lfqndfwgtp
       61 mseershksy rpltvltfrl nylfselnav syhflnlvfh vvvcivflkv cklfldnrss
      121 lvaallfavh pihteavtgv vgraellssi fflaaflsyt kskgpnntiv wtpiavtvfl
      181 vavatlckeq gitvvgiccv yevfiaqgyt lpvlldtavq ilrgkgsipf smlqtllkli
      241 vlmfstlllv vvrvqviqsq lpvftrfdnp aavspsparq ltfnyllpvn awlllnpsel
      301 ccdwtmgtip lveslldvrn vatltffcfl gslivfslry pgdsskavlm alcllvlpfi
      361 pasnlffpvg fvvaervlyv psmgfcilva hgwkklsnks vlrkiswvcl avvlfthalk
      421 tlhrnwdwes eytlfmsalk vnknnaklwn nvghalenek nferalqffi qatqvqpddi
      481 gahmnvgrty knlnktkeae esymiakslm pqiipgkkya arvapnhlnv yinlanlira
      541 nesrleeadq lyrqaismrp dfkqayisrg elllkmnkpl kakeaylral eldrtnadlw
      601 ynlaivyiel kdptealknf nralelnpth klalfnsall mqesgdarlr peakqrllhy
      661 vkeepqdang yfnlgmlamd dkkdveaetw mkkairlqpn frsalfnlal lysqtakelm
      721 alpvledllr yypdhtkgli lkgdilmnqk kdivgakmcf ekileldpnn vqgkhnlcvv
      781 yfeerdlika ekclvetlal apheeyiqrh lnivrskias lsateqlspp adgtvtaaat
      841 ekknslqnlk evkteqkntq ttvennkqys knkkqtqknk idketpkkst kemkdiekkr
      901 vaalkrleei erilnge
//
LOCUS       XP_053924781             924 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein phosphatase 6 regulatory subunit 2
            [Cuculus canorus].
ACCESSION   XP_053924781
VERSION     XP_053924781.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068806.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..924
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..924
                     /product="serine/threonine-protein phosphatase 6
                     regulatory subunit 2"
                     /calculated_mol_wt=102944
     Region          128..530
                     /region_name="SAPS"
                     /note="SIT4 phosphatase-associated protein; pfam04499"
                     /db_xref="CDD:398279"
     CDS             1..924
                     /gene="PPP6R2"
                     /coded_by="XM_054068806.1:350..3124"
                     /db_xref="GeneID:104062245"
ORIGIN      
        1 mfwkfdlntt shvdklldke dvtlhelmde ddilqeckaq nrklldflcq qhcmeelvnl
       61 itreppvdmd ekvrfkypnt acelltsdvp qindklggde tllnilydfl dhepplnpll
      121 asffsktign liarkteqvi aflrkkdqfi slvlkhidts ammdlllrli scvepatlrq
      181 evlnwlnear iiqrlvelih ssqdedrqsn asqtlcdiir lsrdqsnqlq dvpepdpllt
      241 alesqecveq llknmfdgeq tencivngtq vlltlletrr sgveglmdsy tqgfersytv
      301 nssilhgiep rlkdfhqlll nppkktailt tigvleeplg narlhgsrli aallhtntps
      361 inqelcrlst mdllldlffk ytwnnflhfq velsiaails hsvqegkttt ndreskeeal
      421 ndnaatenvg apepttenim vthlfqkccl vqrildawea ndkiqaeggm rrgnmghltr
      481 ianavvqnme kgpmqtqise fikelpedcr grwesfveet ltetnrrntv dlvsthhlhs
      541 ssedediesa fpnelslqqa fseyqiqqmt anfvdqfgfn deefadqddn inapfdriae
      601 infnidaddd spnaslfeac cneriqqfdd neeeediwee keisyatqvk srtrfgasqt
      661 sesssksdle ngdhdgsvds deeegseqqp ppsahnkshs eqkdsdsseg sgwtavfepv
      721 nakpptpcva mdvgssvwda pesttpeekg wakftdfqpf ccsesgprcs spadtescds
      781 dgtskpsqdk sstaaspcvw nacvprkapl vasdssssgg sesdeeeekt qsvpetisae
      841 tetlaltada tndkalrtsd adcvvinklt itevgttkas kplnnvaqhs eehqktagvv
      901 tatatkdrke evvpcaeatl ngpa
//
LOCUS       XP_053924791             274 aa            linear   VRT 09-MAR-2023
DEFINITION  inositol oxygenase [Cuculus canorus].
ACCESSION   XP_053924791
VERSION     XP_053924791.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068816.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..274
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..274
                     /product="inositol oxygenase"
                     /calculated_mol_wt=31637
     Region          28..274
                     /region_name="MIOX"
                     /note="Myo-inositol oxygenase; cl46428"
                     /db_xref="CDD:480768"
     CDS             1..274
                     /gene="MIOX"
                     /coded_by="XM_054068816.1:128..952"
                     /db_xref="GeneID:128852375"
ORIGIN      
        1 msdsassegl kvgkeksqfr nyregsgrvf rtylemhsrq svafvrkkal efgscsrrtm
       61 svmealelld gvvdesdpdv dfpnsfhayq taqairhahp dkewfqlvgl ihdlgkvlil
      121 fgepqwavvg dtfpvgckvq ksvvfadstf ggnpdtsdpr ysthygmyrp ncglenvlms
      181 wghdeymyrv mtvnnfalpe eafymvrfhs fypwhsggdy ghlcsprdlr mlpwvkefnk
      241 fdlytkeeei pdvkelrgyy qgliekycpe rirw
//
LOCUS       XP_053924800            1130 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent calcium channel subunit alpha-2/delta-1 isoform
            X1 [Cuculus canorus].
ACCESSION   XP_053924800
VERSION     XP_053924800.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068825.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1130
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1130
                     /product="voltage-dependent calcium channel subunit
                     alpha-2/delta-1 isoform X1"
                     /calculated_mol_wt=128180
     Region          104..224
                     /region_name="VWA_N"
                     /note="VWA N-terminal; pfam08399"
                     /db_xref="CDD:462464"
     Region          240..418
                     /region_name="vWA_VGCC_like"
                     /note="VWA Voltage gated Calcium channel like:
                     Voltage-gated calcium channels are a complex of five
                     proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The
                     alpha 2 and delta subunits result from proteolytic
                     processing of a single gene product and carries at...;
                     cd01463"
                     /db_xref="CDD:238740"
     Site            order(260,262,264,332,364)
                     /site_type="other"
                     /note="metal ion-dependent adhesion site (MIDAS)"
                     /db_xref="CDD:238740"
     Region          <436..>529
                     /region_name="dCache_1"
                     /note="Cache domain; pfam02743"
                     /db_xref="CDD:460673"
     Region          659..1083
                     /region_name="VGCC_alpha2"
                     /note="Neuronal voltage-dependent calcium channel alpha
                     2acd; pfam08473"
                     /db_xref="CDD:462488"
     CDS             1..1130
                     /gene="CACNA2D1"
                     /coded_by="XM_054068825.1:506..3898"
                     /db_xref="GeneID:104066037"
ORIGIN      
        1 maagwllvfs ltlfhslvmn hssegpfpsa ttikswvdkm qedlvtlart asgvdqlaai
       61 ylqnrnlytv eannprqlve iaardiekll snrskalvrl akeaekyqas hqwrdefgnn
      121 diiyynakdd qndpekndte sgsqrirpvf eedpvfrrqt syqhaavhip tdiyegstiv
      181 lnelnwtaal ddvfkrnree dptllwqvfg satglaryyp aspwvdnsrt pnkidlydvr
      241 rrpwyiqgaa spkdmlilvd asgsvsgltl klirtsviem letlsdddfv nvvsfnnnaq
      301 nvscfnhlvq anvrnkkklk eavykisakg itdykkgfsy afeqllnhsv srancnkiim
      361 lftdggeera qeifhkyned kkvrvftfsv gqhnydkgpi qwmacenkgy yyeipsigai
      421 rintqeyldv lgrpmvlage kakqvqwtnv yldalelglv itgtlpvfnl tkeqngkinq
      481 lilgvmgvdv sledikkltp rftlcpngyy faidpngyvl lhpnlqpkqi gvgipkvklr
      541 krrpnvqnpk sqepvtldfl daelendikv eirkkmidge sgektfetlv ksqderyidk
      601 gnrtytwtav ngtdyslalv lpsysfyyik akieepitqa rysgeiagyd ilainkvtet
      661 lkidhfdeag ytfiapreyc sdvkksennt efllnfnefi drytpssasc ntdmvlrvll
      721 dagftnelaq nywsklsldg vvahfvvtdg gitrvfpkra gevwlenaet yevsfykrsl
      781 dndnyiftap yynksgansy etgimvsrav eitvdgkllk pavvgikida tswmenftkt
      841 tikslcnsei cgcernsmhv dcvilddggf llmsnrdeyt qqigrffgei dpglmrnlin
      901 mslyafnksy dyqsvcdpee epkqgaglrs ayvptitdil hlgwwasaaa wsilqqlfls
      961 ltfprfleaa dmedddfgaa lpktsciteq tqyffenddk sfggivdcin csrlyhaeki
     1021 sntnlvfiis dsqllcrscd pkplmqaekp degpnpcemv kqpryrkgpd vcfdeakqdq
     1081 picttsrasa mtsapififl qvfmwcgwsv tfsnflfcsw lkkladffty
//
LOCUS       XP_053924808            1125 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent calcium channel subunit alpha-2/delta-1 isoform
            X2 [Cuculus canorus].
ACCESSION   XP_053924808
VERSION     XP_053924808.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068833.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1125
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1125
                     /product="voltage-dependent calcium channel subunit
                     alpha-2/delta-1 isoform X2"
                     /calculated_mol_wt=127625
     Region          104..224
                     /region_name="VWA_N"
                     /note="VWA N-terminal; pfam08399"
                     /db_xref="CDD:462464"
     Region          240..418
                     /region_name="vWA_VGCC_like"
                     /note="VWA Voltage gated Calcium channel like:
                     Voltage-gated calcium channels are a complex of five
                     proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The
                     alpha 2 and delta subunits result from proteolytic
                     processing of a single gene product and carries at...;
                     cd01463"
                     /db_xref="CDD:238740"
     Site            order(260,262,264,332,364)
                     /site_type="other"
                     /note="metal ion-dependent adhesion site (MIDAS)"
                     /db_xref="CDD:238740"
     Region          <436..>529
                     /region_name="dCache_1"
                     /note="Cache domain; pfam02743"
                     /db_xref="CDD:460673"
     Region          494..617
                     /region_name="HK_sensor"
                     /note="Sensor domains of Histidine Kinase receptors;
                     cl38916"
                     /db_xref="CDD:365792"
     Region          654..1078
                     /region_name="VGCC_alpha2"
                     /note="Neuronal voltage-dependent calcium channel alpha
                     2acd; pfam08473"
                     /db_xref="CDD:462488"
     CDS             1..1125
                     /gene="CACNA2D1"
                     /coded_by="XM_054068833.1:506..3883"
                     /db_xref="GeneID:104066037"
ORIGIN      
        1 maagwllvfs ltlfhslvmn hssegpfpsa ttikswvdkm qedlvtlart asgvdqlaai
       61 ylqnrnlytv eannprqlve iaardiekll snrskalvrl akeaekyqas hqwrdefgnn
      121 diiyynakdd qndpekndte sgsqrirpvf eedpvfrrqt syqhaavhip tdiyegstiv
      181 lnelnwtaal ddvfkrnree dptllwqvfg satglaryyp aspwvdnsrt pnkidlydvr
      241 rrpwyiqgaa spkdmlilvd asgsvsgltl klirtsviem letlsdddfv nvvsfnnnaq
      301 nvscfnhlvq anvrnkkklk eavykisakg itdykkgfsy afeqllnhsv srancnkiim
      361 lftdggeera qeifhkyned kkvrvftfsv gqhnydkgpi qwmacenkgy yyeipsigai
      421 rintqeyldv lgrpmvlage kakqvqwtnv yldalelglv itgtlpvfnl tkeqngkinq
      481 lilgvmgvdv sledikkltp rftlcpngyy faidpngyvl lhpnlqpkqi gvgipkvklr
      541 krrpnvqepv tldfldaele ndikveirkk midgesgekt fetlvksqde ryidkgnrty
      601 twtavngtdy slalvlpsys fyyikakiee pitqarysge iagydilain kvtetlkidh
      661 fdeagytfia preycsdvkk sennteflln fnefidrytp ssascntdmv lrvlldagft
      721 nelaqnywsk lsldgvvahf vvtdggitrv fpkragevwl enaetyevsf ykrsldndny
      781 iftapyynks gansyetgim vsraveitvd gkllkpavvg ikidatswme nftkttiksl
      841 cnseicgcer nsmhvdcvil ddggfllmsn rdeytqqigr ffgeidpglm rnlinmslya
      901 fnksydyqsv cdpeeepkqg aglrsayvpt itdilhlgww asaaawsilq qlflsltfpr
      961 fleaadmedd dfgaalpkts citeqtqyff enddksfggi vdcincsrly haekisntnl
     1021 vfiisdsqll crscdpkplm qaekpdegpn pcemvkqpry rkgpdvcfde akqdqpictt
     1081 srasamtsap ififlqvfmw cgwsvtfsnf lfcswlkkla dffty
//
LOCUS       XP_053924816            1120 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent calcium channel subunit alpha-2/delta-1 isoform
            X3 [Cuculus canorus].
ACCESSION   XP_053924816
VERSION     XP_053924816.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068841.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1120
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1120
                     /product="voltage-dependent calcium channel subunit
                     alpha-2/delta-1 isoform X3"
                     /calculated_mol_wt=127111
     Region          104..224
                     /region_name="VWA_N"
                     /note="VWA N-terminal; pfam08399"
                     /db_xref="CDD:462464"
     Region          240..418
                     /region_name="vWA_VGCC_like"
                     /note="VWA Voltage gated Calcium channel like:
                     Voltage-gated calcium channels are a complex of five
                     proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The
                     alpha 2 and delta subunits result from proteolytic
                     processing of a single gene product and carries at...;
                     cd01463"
                     /db_xref="CDD:238740"
     Site            order(260,262,264,332,364)
                     /site_type="other"
                     /note="metal ion-dependent adhesion site (MIDAS)"
                     /db_xref="CDD:238740"
     Region          <436..>529
                     /region_name="dCache_1"
                     /note="Cache domain; pfam02743"
                     /db_xref="CDD:460673"
     Region          649..1073
                     /region_name="VGCC_alpha2"
                     /note="Neuronal voltage-dependent calcium channel alpha
                     2acd; pfam08473"
                     /db_xref="CDD:462488"
     CDS             1..1120
                     /gene="CACNA2D1"
                     /coded_by="XM_054068841.1:506..3868"
                     /db_xref="GeneID:104066037"
ORIGIN      
        1 maagwllvfs ltlfhslvmn hssegpfpsa ttikswvdkm qedlvtlart asgvdqlaai
       61 ylqnrnlytv eannprqlve iaardiekll snrskalvrl akeaekyqas hqwrdefgnn
      121 diiyynakdd qndpekndte sgsqrirpvf eedpvfrrqt syqhaavhip tdiyegstiv
      181 lnelnwtaal ddvfkrnree dptllwqvfg satglaryyp aspwvdnsrt pnkidlydvr
      241 rrpwyiqgaa spkdmlilvd asgsvsgltl klirtsviem letlsdddfv nvvsfnnnaq
      301 nvscfnhlvq anvrnkkklk eavykisakg itdykkgfsy afeqllnhsv srancnkiim
      361 lftdggeera qeifhkyned kkvrvftfsv gqhnydkgpi qwmacenkgy yyeipsigai
      421 rintqeyldv lgrpmvlage kakqvqwtnv yldalelglv itgtlpvfnl tkeqngkinq
      481 lilgvmgvdv sledikkltp rftlcpngyy faidpngyvl lhpnlqpkqi gvgipkvklr
      541 krrpnvqnpk sqepvtldfl daelendikv eirkkmidge sgektfetlv ksqderyidk
      601 gnrtytwtav ngtdyslalv lpsysfyyik akieepitqa rlainkvtet lkidhfdeag
      661 ytfiapreyc sdvkksennt efllnfnefi drytpssasc ntdmvlrvll dagftnelaq
      721 nywsklsldg vvahfvvtdg gitrvfpkra gevwlenaet yevsfykrsl dndnyiftap
      781 yynksgansy etgimvsrav eitvdgkllk pavvgikida tswmenftkt tikslcnsei
      841 cgcernsmhv dcvilddggf llmsnrdeyt qqigrffgei dpglmrnlin mslyafnksy
      901 dyqsvcdpee epkqgaglrs ayvptitdil hlgwwasaaa wsilqqlfls ltfprfleaa
      961 dmedddfgaa lpktsciteq tqyffenddk sfggivdcin csrlyhaeki sntnlvfiis
     1021 dsqllcrscd pkplmqaekp degpnpcemv kqpryrkgpd vcfdeakqdq picttsrasa
     1081 mtsapififl qvfmwcgwsv tfsnflfcsw lkkladffty
//
LOCUS       XP_053924820            1119 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent calcium channel subunit alpha-2/delta-1 isoform
            X4 [Cuculus canorus].
ACCESSION   XP_053924820
VERSION     XP_053924820.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068845.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1119
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1119
                     /product="voltage-dependent calcium channel subunit
                     alpha-2/delta-1 isoform X4"
                     /calculated_mol_wt=126713
     Region          104..224
                     /region_name="VWA_N"
                     /note="VWA N-terminal; pfam08399"
                     /db_xref="CDD:462464"
     Region          240..418
                     /region_name="vWA_VGCC_like"
                     /note="VWA Voltage gated Calcium channel like:
                     Voltage-gated calcium channels are a complex of five
                     proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The
                     alpha 2 and delta subunits result from proteolytic
                     processing of a single gene product and carries at...;
                     cd01463"
                     /db_xref="CDD:238740"
     Site            order(260,262,264,332,364)
                     /site_type="other"
                     /note="metal ion-dependent adhesion site (MIDAS)"
                     /db_xref="CDD:238740"
     Region          <436..>529
                     /region_name="dCache_1"
                     /note="Cache domain; pfam02743"
                     /db_xref="CDD:460673"
     Region          659..1083
                     /region_name="VGCC_alpha2"
                     /note="Neuronal voltage-dependent calcium channel alpha
                     2acd; pfam08473"
                     /db_xref="CDD:462488"
     CDS             1..1119
                     /gene="CACNA2D1"
                     /coded_by="XM_054068845.1:506..3865"
                     /db_xref="GeneID:104066037"
ORIGIN      
        1 maagwllvfs ltlfhslvmn hssegpfpsa ttikswvdkm qedlvtlart asgvdqlaai
       61 ylqnrnlytv eannprqlve iaardiekll snrskalvrl akeaekyqas hqwrdefgnn
      121 diiyynakdd qndpekndte sgsqrirpvf eedpvfrrqt syqhaavhip tdiyegstiv
      181 lnelnwtaal ddvfkrnree dptllwqvfg satglaryyp aspwvdnsrt pnkidlydvr
      241 rrpwyiqgaa spkdmlilvd asgsvsgltl klirtsviem letlsdddfv nvvsfnnnaq
      301 nvscfnhlvq anvrnkkklk eavykisakg itdykkgfsy afeqllnhsv srancnkiim
      361 lftdggeera qeifhkyned kkvrvftfsv gqhnydkgpi qwmacenkgy yyeipsigai
      421 rintqeyldv lgrpmvlage kakqvqwtnv yldalelglv itgtlpvfnl tkeqngkinq
      481 lilgvmgvdv sledikkltp rftlcpngyy faidpngyvl lhpnlqpkqi gvgipkvklr
      541 krrpnvqnpk sqepvtldfl daelendikv eirkkmidge sgektfetlv ksqderyidk
      601 gnrtytwtav ngtdyslalv lpsysfyyik akieepitqa rysgeiagyd ilainkvtet
      661 lkidhfdeag ytfiapreyc sdvkksennt efllnfnefi drytpssasc ntdmvlrvll
      721 dagftnelaq nywsklsldg vvahfvvtdg gitrvfpkra gevwlenaet yevsfykrsl
      781 dndnyiftap yynksgansy etgimvsrav eitvdgkllk pavvgikida tswmenftkt
      841 tikslcnsei cgcernsmhv dcvilddggf llmsnrdeyt qqigrffgei dpglmrnlin
      901 mslyafnksy dyqsvcdpee epkqgaglrs ayvptitdil hlgwwasaaa wsilqqlfls
      961 ltfprfleaa dmedddfgaa lpktsciteq tqyffenddk sfggivdcin csrlyhaeki
     1021 sntnlvfiis dsqllcrscd pkplmqaekp degpnpcemv kqpryrkgpd vcfdeakqdq
     1081 picttsrasa mtsapififl qvfmwcgwki rltavvslv
//
LOCUS       XP_053924827            1116 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent calcium channel subunit alpha-2/delta-1 isoform
            X5 [Cuculus canorus].
ACCESSION   XP_053924827
VERSION     XP_053924827.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068852.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1116
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1116
                     /product="voltage-dependent calcium channel subunit
                     alpha-2/delta-1 isoform X5"
                     /calculated_mol_wt=126140
     Region          104..224
                     /region_name="VWA_N"
                     /note="VWA N-terminal; pfam08399"
                     /db_xref="CDD:462464"
     Region          240..418
                     /region_name="vWA_VGCC_like"
                     /note="VWA Voltage gated Calcium channel like:
                     Voltage-gated calcium channels are a complex of five
                     proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The
                     alpha 2 and delta subunits result from proteolytic
                     processing of a single gene product and carries at...;
                     cd01463"
                     /db_xref="CDD:238740"
     Site            order(260,262,264,332,364)
                     /site_type="other"
                     /note="metal ion-dependent adhesion site (MIDAS)"
                     /db_xref="CDD:238740"
     Region          <436..>529
                     /region_name="dCache_1"
                     /note="Cache domain; pfam02743"
                     /db_xref="CDD:460673"
     Region          659..1085
                     /region_name="VGCC_alpha2"
                     /note="Neuronal voltage-dependent calcium channel alpha
                     2acd; pfam08473"
                     /db_xref="CDD:462488"
     CDS             1..1116
                     /gene="CACNA2D1"
                     /coded_by="XM_054068852.1:503..3853"
                     /db_xref="GeneID:104066037"
ORIGIN      
        1 maagwllvfs ltlfhslvmn hssegpfpsa ttikswvdkm qedlvtlart asgvdqlaai
       61 ylqnrnlytv eannprqlve iaardiekll snrskalvrl akeaekyqas hqwrdefgnn
      121 diiyynakdd qndpekndte sgsqrirpvf eedpvfrrqt syqhaavhip tdiyegstiv
      181 lnelnwtaal ddvfkrnree dptllwqvfg satglaryyp aspwvdnsrt pnkidlydvr
      241 rrpwyiqgaa spkdmlilvd asgsvsgltl klirtsviem letlsdddfv nvvsfnnnaq
      301 nvscfnhlvq anvrnkkklk eavykisakg itdykkgfsy afeqllnhsv srancnkiim
      361 lftdggeera qeifhkyned kkvrvftfsv gqhnydkgpi qwmacenkgy yyeipsigai
      421 rintqeyldv lgrpmvlage kakqvqwtnv yldalelglv itgtlpvfnl tkeqngkinq
      481 lilgvmgvdv sledikkltp rftlcpngyy faidpngyvl lhpnlqpkqi gvgipkvklr
      541 krrpnvqnpk sqepvtldfl daelendikv eirkkmidge sgektfetlv ksqderyidk
      601 gnrtytwtav ngtdyslalv lpsysfyyik akieepitqa rysgeiagyd ilainkvtet
      661 lkidhfdeag ytfiapreyc sdvkksennt efllnfnefi drytpssasc ntdmvlrvll
      721 dagftnelaq nywsklsldg vvahfvvtdg gitrvfpkra gevwlenaet yevsfykrsl
      781 dndnyiftap yynksgansy etgimvsrav eitvdgkllk pavvgikida tswmenftkt
      841 tikslcnsei cgcernsmhv dcvilddggf llmsnrdeyt qqigrffgei dpglmrnlin
      901 mslyafnksy dyqsvcdpee epkqgaglrs ayvptitdil hlgwwasaaa wsilqqlfls
      961 ltfprfleaa dmedddfgaa lpktsciteq tqyffenddk sfggivdcin csrlyhaeki
     1021 sntnlvfiis dsqllcrscd pkplmqaekp degpnpcemv kqpryrkgpd vcfdeakqed
     1081 sadcggvsgl spslwsmvgi qlvllwllsg srhcql
//
LOCUS       XP_053924834            1115 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent calcium channel subunit alpha-2/delta-1 isoform
            X6 [Cuculus canorus].
ACCESSION   XP_053924834
VERSION     XP_053924834.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068859.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1115
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1115
                     /product="voltage-dependent calcium channel subunit
                     alpha-2/delta-1 isoform X6"
                     /calculated_mol_wt=126619
     Region          104..224
                     /region_name="VWA_N"
                     /note="VWA N-terminal; pfam08399"
                     /db_xref="CDD:462464"
     Region          240..418
                     /region_name="vWA_VGCC_like"
                     /note="VWA Voltage gated Calcium channel like:
                     Voltage-gated calcium channels are a complex of five
                     proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The
                     alpha 2 and delta subunits result from proteolytic
                     processing of a single gene product and carries at...;
                     cd01463"
                     /db_xref="CDD:238740"
     Site            order(260,262,264,332,364)
                     /site_type="other"
                     /note="metal ion-dependent adhesion site (MIDAS)"
                     /db_xref="CDD:238740"
     Region          <436..>529
                     /region_name="dCache_1"
                     /note="Cache domain; pfam02743"
                     /db_xref="CDD:460673"
     Region          642..1068
                     /region_name="VGCC_alpha2"
                     /note="Neuronal voltage-dependent calcium channel alpha
                     2acd; pfam08473"
                     /db_xref="CDD:462488"
     CDS             1..1115
                     /gene="CACNA2D1"
                     /coded_by="XM_054068859.1:506..3853"
                     /db_xref="GeneID:104066037"
ORIGIN      
        1 maagwllvfs ltlfhslvmn hssegpfpsa ttikswvdkm qedlvtlart asgvdqlaai
       61 ylqnrnlytv eannprqlve iaardiekll snrskalvrl akeaekyqas hqwrdefgnn
      121 diiyynakdd qndpekndte sgsqrirpvf eedpvfrrqt syqhaavhip tdiyegstiv
      181 lnelnwtaal ddvfkrnree dptllwqvfg satglaryyp aspwvdnsrt pnkidlydvr
      241 rrpwyiqgaa spkdmlilvd asgsvsgltl klirtsviem letlsdddfv nvvsfnnnaq
      301 nvscfnhlvq anvrnkkklk eavykisakg itdykkgfsy afeqllnhsv srancnkiim
      361 lftdggeera qeifhkyned kkvrvftfsv gqhnydkgpi qwmacenkgy yyeipsigai
      421 rintqeyldv lgrpmvlage kakqvqwtnv yldalelglv itgtlpvfnl tkeqngkinq
      481 lilgvmgvdv sledikkltp rftlcpngyy faidpngyvl lhpnlqpkqi gvgipkvklr
      541 krrpnvqnpk sqepvtldfl daelendikv eirkkmidge sgektfetlv ksqderyidk
      601 gnrtytwtav ngtdyslalv lpsysfyyik akieepitqa rftetlkidh fdeagytfia
      661 preycsdvkk sennteflln fnefidrytp ssascntdmv lrvlldagft nelaqnywsk
      721 lsldgvvahf vvtdggitrv fpkragevwl enaetyevsf ykrsldndny iftapyynks
      781 gansyetgim vsraveitvd gkllkpavvg ikidatswme nftkttiksl cnseicgcer
      841 nsmhvdcvil ddggfllmsn rdeytqqigr ffgeidpglm rnlinmslya fnksydyqsv
      901 cdpeeepkqg aglrsayvpt itdilhlgww asaaawsilq qlflsltfpr fleaadmedd
      961 dfgaalpkts citeqtqyff enddksfggi vdcincsrly haekisntnl vfiisdsqll
     1021 crscdpkplm qaekpdegpn pcemvkqpry rkgpdvcfde akqdqpictt srasamtsap
     1081 ififlqvfmw cgwsvtfsnf lfcswlkkla dffty
//
LOCUS       XP_053924839            1111 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent calcium channel subunit alpha-2/delta-1 isoform
            X7 [Cuculus canorus].
ACCESSION   XP_053924839
VERSION     XP_053924839.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068864.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1111
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1111
                     /product="voltage-dependent calcium channel subunit
                     alpha-2/delta-1 isoform X7"
                     /calculated_mol_wt=126011
     Region          104..224
                     /region_name="VWA_N"
                     /note="VWA N-terminal; pfam08399"
                     /db_xref="CDD:462464"
     Region          240..418
                     /region_name="vWA_VGCC_like"
                     /note="VWA Voltage gated Calcium channel like:
                     Voltage-gated calcium channels are a complex of five
                     proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The
                     alpha 2 and delta subunits result from proteolytic
                     processing of a single gene product and carries at...;
                     cd01463"
                     /db_xref="CDD:238740"
     Site            order(260,262,264,332,364)
                     /site_type="other"
                     /note="metal ion-dependent adhesion site (MIDAS)"
                     /db_xref="CDD:238740"
     Region          494..603
                     /region_name="HK_sensor"
                     /note="Sensor domains of Histidine Kinase receptors;
                     cl38916"
                     /db_xref="CDD:365792"
     Region          640..1064
                     /region_name="VGCC_alpha2"
                     /note="Neuronal voltage-dependent calcium channel alpha
                     2acd; pfam08473"
                     /db_xref="CDD:462488"
     CDS             1..1111
                     /gene="CACNA2D1"
                     /coded_by="XM_054068864.1:505..3840"
                     /db_xref="GeneID:104066037"
ORIGIN      
        1 maagwllvfs ltlfhslvmn hssegpfpsa ttikswvdkm qedlvtlart asgvdqlaai
       61 ylqnrnlytv eannprqlve iaardiekll snrskalvrl akeaekyqas hqwrdefgnn
      121 diiyynakdd qndpekndte sgsqrirpvf eedpvfrrqt syqhaavhip tdiyegstiv
      181 lnelnwtaal ddvfkrnree dptllwqvfg satglaryyp aspwvdnsrt pnkidlydvr
      241 rrpwyiqgaa spkdmlilvd asgsvsgltl klirtsviem letlsdddfv nvvsfnnnaq
      301 nvscfnhlvq anvrnkkklk eavykisakg itdykkgfsy afeqllnhsv srancnkiim
      361 lftdggeera qeifhkyned kkvrvftfsv gqhnydkgpi qwmacenkgy yyeipsigai
      421 rintqeyldv lgrpmvlage kakqvqwtnv yldalelglv itgtlpvfnl tkeqngkinq
      481 lilgvmgvdv sledikkltp rftlcpngyy faidpngyvl lhpnlqpknp ksqepvtldf
      541 ldaelendik veirkkmidg esgektfetl vksqderyid kgnrtytwta vngtdyslal
      601 vlpsysfyyi kakieepitq arysgeiagy dilainkvte tlkidhfdea gytfiaprey
      661 csdvkksenn tefllnfnef idrytpssas cntdmvlrvl ldagftnela qnywsklsld
      721 gvvahfvvtd ggitrvfpkr agevwlenae tyevsfykrs ldndnyifta pyynksgans
      781 yetgimvsra veitvdgkll kpavvgikid atswmenftk ttikslcnse icgcernsmh
      841 vdcvilddgg fllmsnrdey tqqigrffge idpglmrnli nmslyafnks ydyqsvcdpe
      901 eepkqgaglr sayvptitdi lhlgwwasaa awsilqqlfl sltfprflea admedddfga
      961 alpktscite qtqyffendd ksfggivdci ncsrlyhaek isntnlvfii sdsqllcrsc
     1021 dpkplmqaek pdegpnpcem vkqpryrkgp dvcfdeakqd qpicttsras amtsapifif
     1081 lqvfmwcgws vtfsnflfcs wlkkladfft y
//
LOCUS       XP_053924848            1106 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent calcium channel subunit alpha-2/delta-1 isoform
            X8 [Cuculus canorus].
ACCESSION   XP_053924848
VERSION     XP_053924848.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068873.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1106
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1106
                     /product="voltage-dependent calcium channel subunit
                     alpha-2/delta-1 isoform X8"
                     /calculated_mol_wt=125457
     Region          104..224
                     /region_name="VWA_N"
                     /note="VWA N-terminal; pfam08399"
                     /db_xref="CDD:462464"
     Region          240..418
                     /region_name="vWA_VGCC_like"
                     /note="VWA Voltage gated Calcium channel like:
                     Voltage-gated calcium channels are a complex of five
                     proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The
                     alpha 2 and delta subunits result from proteolytic
                     processing of a single gene product and carries at...;
                     cd01463"
                     /db_xref="CDD:238740"
     Site            order(260,262,264,332,364)
                     /site_type="other"
                     /note="metal ion-dependent adhesion site (MIDAS)"
                     /db_xref="CDD:238740"
     Region          494..598
                     /region_name="HK_sensor"
                     /note="Sensor domains of Histidine Kinase receptors;
                     cl38916"
                     /db_xref="CDD:365792"
     Region          635..1059
                     /region_name="VGCC_alpha2"
                     /note="Neuronal voltage-dependent calcium channel alpha
                     2acd; pfam08473"
                     /db_xref="CDD:462488"
     CDS             1..1106
                     /gene="CACNA2D1"
                     /coded_by="XM_054068873.1:506..3826"
                     /db_xref="GeneID:104066037"
ORIGIN      
        1 maagwllvfs ltlfhslvmn hssegpfpsa ttikswvdkm qedlvtlart asgvdqlaai
       61 ylqnrnlytv eannprqlve iaardiekll snrskalvrl akeaekyqas hqwrdefgnn
      121 diiyynakdd qndpekndte sgsqrirpvf eedpvfrrqt syqhaavhip tdiyegstiv
      181 lnelnwtaal ddvfkrnree dptllwqvfg satglaryyp aspwvdnsrt pnkidlydvr
      241 rrpwyiqgaa spkdmlilvd asgsvsgltl klirtsviem letlsdddfv nvvsfnnnaq
      301 nvscfnhlvq anvrnkkklk eavykisakg itdykkgfsy afeqllnhsv srancnkiim
      361 lftdggeera qeifhkyned kkvrvftfsv gqhnydkgpi qwmacenkgy yyeipsigai
      421 rintqeyldv lgrpmvlage kakqvqwtnv yldalelglv itgtlpvfnl tkeqngkinq
      481 lilgvmgvdv sledikkltp rftlcpngyy faidpngyvl lhpnlqpkep vtldfldael
      541 endikveirk kmidgesgek tfetlvksqd eryidkgnrt ytwtavngtd yslalvlpsy
      601 sfyyikakie epitqarysg eiagydilai nkvtetlkid hfdeagytfi apreycsdvk
      661 ksenntefll nfnefidryt pssascntdm vlrvlldagf tnelaqnyws klsldgvvah
      721 fvvtdggitr vfpkragevw lenaetyevs fykrsldndn yiftapyynk sgansyetgi
      781 mvsraveitv dgkllkpavv gikidatswm enftkttiks lcnseicgce rnsmhvdcvi
      841 lddggfllms nrdeytqqig rffgeidpgl mrnlinmsly afnksydyqs vcdpeeepkq
      901 gaglrsayvp titdilhlgw wasaaawsil qqlflsltfp rfleaadmed ddfgaalpkt
      961 sciteqtqyf fenddksfgg ivdcincsrl yhaekisntn lvfiisdsql lcrscdpkpl
     1021 mqaekpdegp npcemvkqpr yrkgpdvcfd eakqdqpict tsrasamtsa pififlqvfm
     1081 wcgwsvtfsn flfcswlkkl adffty
//
LOCUS       XP_053924857            1101 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent calcium channel subunit alpha-2/delta-1 isoform
            X9 [Cuculus canorus].
ACCESSION   XP_053924857
VERSION     XP_053924857.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068882.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1101
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1101
                     /product="voltage-dependent calcium channel subunit
                     alpha-2/delta-1 isoform X9"
                     /calculated_mol_wt=124579
     Region          104..224
                     /region_name="VWA_N"
                     /note="VWA N-terminal; pfam08399"
                     /db_xref="CDD:462464"
     Region          240..418
                     /region_name="vWA_VGCC_like"
                     /note="VWA Voltage gated Calcium channel like:
                     Voltage-gated calcium channels are a complex of five
                     proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The
                     alpha 2 and delta subunits result from proteolytic
                     processing of a single gene product and carries at...;
                     cd01463"
                     /db_xref="CDD:238740"
     Site            order(260,262,264,332,364)
                     /site_type="other"
                     /note="metal ion-dependent adhesion site (MIDAS)"
                     /db_xref="CDD:238740"
     Region          <436..>529
                     /region_name="dCache_1"
                     /note="Cache domain; pfam02743"
                     /db_xref="CDD:460673"
     Region          642..1070
                     /region_name="VGCC_alpha2"
                     /note="Neuronal voltage-dependent calcium channel alpha
                     2acd; pfam08473"
                     /db_xref="CDD:462488"
     CDS             1..1101
                     /gene="CACNA2D1"
                     /coded_by="XM_054068882.1:503..3808"
                     /db_xref="GeneID:104066037"
ORIGIN      
        1 maagwllvfs ltlfhslvmn hssegpfpsa ttikswvdkm qedlvtlart asgvdqlaai
       61 ylqnrnlytv eannprqlve iaardiekll snrskalvrl akeaekyqas hqwrdefgnn
      121 diiyynakdd qndpekndte sgsqrirpvf eedpvfrrqt syqhaavhip tdiyegstiv
      181 lnelnwtaal ddvfkrnree dptllwqvfg satglaryyp aspwvdnsrt pnkidlydvr
      241 rrpwyiqgaa spkdmlilvd asgsvsgltl klirtsviem letlsdddfv nvvsfnnnaq
      301 nvscfnhlvq anvrnkkklk eavykisakg itdykkgfsy afeqllnhsv srancnkiim
      361 lftdggeera qeifhkyned kkvrvftfsv gqhnydkgpi qwmacenkgy yyeipsigai
      421 rintqeyldv lgrpmvlage kakqvqwtnv yldalelglv itgtlpvfnl tkeqngkinq
      481 lilgvmgvdv sledikkltp rftlcpngyy faidpngyvl lhpnlqpkqi gvgipkvklr
      541 krrpnvqnpk sqepvtldfl daelendikv eirkkmidge sgektfetlv ksqderyidk
      601 gnrtytwtav ngtdyslalv lpsysfyyik akieepitqa rftetlkidh fdeagytfia
      661 preycsdvkk sennteflln fnefidrytp ssascntdmv lrvlldagft nelaqnywsk
      721 lsldgvvahf vvtdggitrv fpkragevwl enaetyevsf ykrsldndny iftapyynks
      781 gansyetgim vsraveitvd gkllkpavvg ikidatswme nftkttiksl cnseicgcer
      841 nsmhvdcvil ddggfllmsn rdeytqqigr ffgeidpglm rnlinmslya fnksydyqsv
      901 cdpeeepkqg aglrsayvpt itdilhlgww asaaawsilq qlflsltfpr fleaadmedd
      961 dfgaalpkts citeqtqyff enddksfggi vdcincsrly haekisntnl vfiisdsqll
     1021 crscdpkplm qaekpdegpn pcemvkqpry rkgpdvcfde akqedsadcg gvsglspslw
     1081 smvgiqlvll wllsgsrhcq l
//
LOCUS       XP_009566875            1082 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent calcium channel subunit alpha-2/delta-1 isoform
            X10 [Cuculus canorus].
ACCESSION   XP_009566875
VERSION     XP_009566875.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568580.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566875.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1082
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1082
                     /product="voltage-dependent calcium channel subunit
                     alpha-2/delta-1 isoform X10"
                     /calculated_mol_wt=122410
     Region          104..224
                     /region_name="VWA_N"
                     /note="VWA N-terminal; pfam08399"
                     /db_xref="CDD:462464"
     Region          240..418
                     /region_name="vWA_VGCC_like"
                     /note="VWA Voltage gated Calcium channel like:
                     Voltage-gated calcium channels are a complex of five
                     proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The
                     alpha 2 and delta subunits result from proteolytic
                     processing of a single gene product and carries at...;
                     cd01463"
                     /db_xref="CDD:238740"
     Site            order(260,262,264,332,364)
                     /site_type="other"
                     /note="metal ion-dependent adhesion site (MIDAS)"
                     /db_xref="CDD:238740"
     Region          494..603
                     /region_name="HK_sensor"
                     /note="Sensor domains of Histidine Kinase receptors;
                     cl38916"
                     /db_xref="CDD:365792"
     Region          623..1051
                     /region_name="VGCC_alpha2"
                     /note="Neuronal voltage-dependent calcium channel alpha
                     2acd; pfam08473"
                     /db_xref="CDD:462488"
     CDS             1..1082
                     /gene="CACNA2D1"
                     /coded_by="XM_009568580.2:501..3749"
                     /db_xref="GeneID:104066037"
ORIGIN      
        1 maagwllvfs ltlfhslvmn hssegpfpsa ttikswvdkm qedlvtlart asgvdqlaai
       61 ylqnrnlytv eannprqlve iaardiekll snrskalvrl akeaekyqas hqwrdefgnn
      121 diiyynakdd qndpekndte sgsqrirpvf eedpvfrrqt syqhaavhip tdiyegstiv
      181 lnelnwtaal ddvfkrnree dptllwqvfg satglaryyp aspwvdnsrt pnkidlydvr
      241 rrpwyiqgaa spkdmlilvd asgsvsgltl klirtsviem letlsdddfv nvvsfnnnaq
      301 nvscfnhlvq anvrnkkklk eavykisakg itdykkgfsy afeqllnhsv srancnkiim
      361 lftdggeera qeifhkyned kkvrvftfsv gqhnydkgpi qwmacenkgy yyeipsigai
      421 rintqeyldv lgrpmvlage kakqvqwtnv yldalelglv itgtlpvfnl tkeqngkinq
      481 lilgvmgvdv sledikkltp rftlcpngyy faidpngyvl lhpnlqpknp ksqepvtldf
      541 ldaelendik veirkkmidg esgektfetl vksqderyid kgnrtytwta vngtdyslal
      601 vlpsysfyyi kakieepitq arftetlkid hfdeagytfi apreycsdvk ksenntefll
      661 nfnefidryt pssascntdm vlrvlldagf tnelaqnyws klsldgvvah fvvtdggitr
      721 vfpkragevw lenaetyevs fykrsldndn yiftapyynk sgansyetgi mvsraveitv
      781 dgkllkpavv gikidatswm enftkttiks lcnseicgce rnsmhvdcvi lddggfllms
      841 nrdeytqqig rffgeidpgl mrnlinmsly afnksydyqs vcdpeeepkq gaglrsayvp
      901 titdilhlgw wasaaawsil qqlflsltfp rfleaadmed ddfgaalpkt sciteqtqyf
      961 fenddksfgg ivdcincsrl yhaekisntn lvfiisdsql lcrscdpkpl mqaekpdegp
     1021 npcemvkqpr yrkgpdvcfd eakqedsadc ggvsglspsl wsmvgiqlvl lwllsgsrhc
     1081 ql
//
LOCUS       XP_053924879             285 aa            linear   VRT 09-MAR-2023
DEFINITION  kit ligand isoform X1 [Cuculus canorus].
ACCESSION   XP_053924879
VERSION     XP_053924879.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068904.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..285
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..285
                     /product="kit ligand isoform X1"
                     /calculated_mol_wt=32081
     Region          1..285
                     /region_name="SCF"
                     /note="Stem cell factor; pfam02404"
                     /db_xref="CDD:396808"
     CDS             1..285
                     /gene="KITLG"
                     /coded_by="XM_054068904.1:199..1056"
                     /db_xref="GeneID:104058430"
ORIGIN      
        1 mkkaqtwiit cfclqlllln plvkaqsscg npvtddvndi aklvgnlpnd ymitlkyvpk
       61 mdslpnhcwl hlmvpefsrs lhnllqkfsd isdmsdvlsn yliinnltri indlmaclaf
      121 dknkdfvken ghlyeeghfi pedffrhfns tievykefad tldkndcilp stvetpends
      181 rvavtktflf ppvaasslrn dsigsntssn kealgfisss slqgisialt sllsvligfi
      241 lgaiywkkth pksrpesdet tqyqncqeen eisvlqqkek ehlqv
//
LOCUS       XP_053924880             285 aa            linear   VRT 09-MAR-2023
DEFINITION  kit ligand isoform X2 [Cuculus canorus].
ACCESSION   XP_053924880
VERSION     XP_053924880.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068905.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..285
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..285
                     /product="kit ligand isoform X2"
                     /calculated_mol_wt=32100
     Region          1..285
                     /region_name="SCF"
                     /note="Stem cell factor; pfam02404"
                     /db_xref="CDD:396808"
     CDS             1..285
                     /gene="KITLG"
                     /coded_by="XM_054068905.1:91..948"
                     /db_xref="GeneID:104058430"
ORIGIN      
        1 mdqcktwiit cfclqlllln plvkaqsscg npvtddvndi aklvgnlpnd ymitlkyvpk
       61 mdslpnhcwl hlmvpefsrs lhnllqkfsd isdmsdvlsn yliinnltri indlmaclaf
      121 dknkdfvken ghlyeeghfi pedffrhfns tievykefad tldkndcilp stvetpends
      181 rvavtktflf ppvaasslrn dsigsntssn kealgfisss slqgisialt sllsvligfi
      241 lgaiywkkth pksrpesdet tqyqncqeen eisvlqqkek ehlqv
//
LOCUS       XP_053924888             253 aa            linear   VRT 09-MAR-2023
DEFINITION  kit ligand isoform X3 [Cuculus canorus].
ACCESSION   XP_053924888
VERSION     XP_053924888.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068913.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..253
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..253
                     /product="kit ligand isoform X3"
                     /calculated_mol_wt=28760
     Region          1..253
                     /region_name="SCF"
                     /note="Stem cell factor; pfam02404"
                     /db_xref="CDD:396808"
     CDS             1..253
                     /gene="KITLG"
                     /coded_by="XM_054068913.1:202..963"
                     /db_xref="GeneID:104058430"
ORIGIN      
        1 mkkaqtwiit cfclqlllln plvkaqsscg npvtddvndi aklvgnlpnd ymitlkyvpk
       61 mdslpnhcwl hlmvpefsrs lhnllqkfsd isdmsdvlsn yliinnltri indlmaclaf
      121 dknkdfvken ghlyeeghfi pedffrhfns tievykefad tldkndcilp stvetpenee
      181 algfissssl qgisialtsl lsvligfilg aiywkkthpk srpesdettq yqncqeenei
      241 svlqqkekeh lqv
//
LOCUS       XP_053924897             234 aa            linear   VRT 09-MAR-2023
DEFINITION  kit ligand isoform X4 [Cuculus canorus].
ACCESSION   XP_053924897
VERSION     XP_053924897.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068922.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..234
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..234
                     /product="kit ligand isoform X4"
                     /calculated_mol_wt=26478
     Region          1..234
                     /region_name="SCF"
                     /note="Stem cell factor; pfam02404"
                     /db_xref="CDD:396808"
     CDS             1..234
                     /gene="KITLG"
                     /coded_by="XM_054068922.1:281..985"
                     /db_xref="GeneID:104058430"
ORIGIN      
        1 mitlkyvpkm dslpnhcwlh lmvpefsrsl hnllqkfsdi sdmsdvlsny liinnltrii
       61 ndlmaclafd knkdfvkeng hlyeeghfip edffrhfnst ievykefadt ldkndcilps
      121 tvetpendsr vavtktflfp pvaasslrnd sigsntssnk ealgfissss lqgisialts
      181 llsvligfil gaiywkkthp ksrpesdett qyqncqeene isvlqqkeke hlqv
//
LOCUS       XP_053924925             860 aa            linear   VRT 09-MAR-2023
DEFINITION  PR domain zinc finger protein 4 isoform X1 [Cuculus canorus].
ACCESSION   XP_053924925
VERSION     XP_053924925.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068950.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..860
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..860
                     /product="PR domain zinc finger protein 4 isoform X1"
                     /calculated_mol_wt=94502
     Region          418..455
                     /region_name="zf_PR_Knuckle"
                     /note="PR zinc knuckle motif; pfam18445"
                     /db_xref="CDD:375871"
     Region          458..597
                     /region_name="PR-SET_PRDM4"
                     /note="PR-SET domain found in PR domain zinc finger
                     protein 4 (PRDM4) and similar proteins; cd19189"
                     /db_xref="CDD:380966"
     Site            order(476..478,502,522..525,535,548..552,554,563..564,
                     588..589)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:380966"
     Site            order(476..478,522,548..552,554,588)
                     /site_type="other"
                     /note="putative SAM binding site"
                     /db_xref="CDD:380966"
     Region          607..626
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          <622..797
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          652..672
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          680..700
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(685,687,689,691..692,695..696,699,713,715,719..720,
                     723..724,727,741,743,745,747..748,751..752,755)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          692..717
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          708..728
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          720..743
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          736..756
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          764..784
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          792..811
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..860
                     /gene="PRDM4"
                     /coded_by="XM_054068950.1:7..2589"
                     /db_xref="GeneID:104056340"
ORIGIN      
        1 mrlrrapctp gergpaekgg pggfdegprh rpgrfgvake ilgftwivwc iwpifsrmne
       61 mnlspvgmdq ltsssvsnal pvsgshlgla aspthnaipa pglpvaipnl gpslsslpsa
      121 lslmlpmgig drgvmcgipe rnytlppppy phlessyfrh ilpgilsyla drpppqyihp
      181 ntinvdsnpa lsvssnpsal dpyqpsgtvg lepgivsmds ravnthgaqn lhpsdshdva
      241 ldttitmesv srvtspistd gmteeltmdd vagdhsqipn gsqsheplav dtvgsnltsd
      301 avghggvipi hgstlelpvv mepdhiagrv tgisdstlnd sihtvamstn svsvalstsh
      361 nlasldsval hevglslepv avssinqeva mgpshvdvsa dnlafvpssl qmedsnsnke
      421 nmatlftiwc tlcdkaypsd cpdhgpvtfv pdtpiesrar lslpkqlvlr qsimgaemdf
      481 gllligvwtr etipvrtcfg pligqqshsl evadwtdkva shiwkiyhng vlefcvitad
      541 enecnwmmfv rkarnreeqn lvayphdgki yfctsrdipp ehellfyysr dyarqlgvpd
      601 hpdvhmchcg kecasyadfk ahlsshihnh lpsqghsssh gaghgrerkw kcsmcpqafi
      661 spsklhihfm ghmgmkphkc dfcskafsdp snlrthlkih tgqknyrctl cdksftqkah
      721 leshmvihtg eknlkcdyce klfmrrqdlk qhvlthtqeq qikcpkcdkl flrtnhlkkh
      781 lnshegkrdy vcekcskayl tkyhltrhlk ickgptssls apeeeeeeds eeelidsmrt
      841 edcrinngvy stgdalpghk
//
LOCUS       XP_053924932             853 aa            linear   VRT 09-MAR-2023
DEFINITION  PR domain zinc finger protein 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053924932
VERSION     XP_053924932.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068957.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..853
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..853
                     /product="PR domain zinc finger protein 4 isoform X2"
                     /calculated_mol_wt=93730
     Region          418..455
                     /region_name="zf_PR_Knuckle"
                     /note="PR zinc knuckle motif; pfam18445"
                     /db_xref="CDD:375871"
     Region          458..590
                     /region_name="PR-SET_PRDM4"
                     /note="PR-SET domain found in PR domain zinc finger
                     protein 4 (PRDM4) and similar proteins; cd19189"
                     /db_xref="CDD:380966"
     Site            order(476..478,495,515..518,528,541..545,547,556..557,
                     581..582)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:380966"
     Site            order(476..478,515,541..545,547,581)
                     /site_type="other"
                     /note="putative SAM binding site"
                     /db_xref="CDD:380966"
     Region          600..619
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          <615..790
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          645..665
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          673..693
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(678,680,682,684..685,688..689,692,706,708,712..713,
                     716..717,720,734,736,738,740..741,744..745,748)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          685..710
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          701..721
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          713..736
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          729..749
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          757..777
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          785..804
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..853
                     /gene="PRDM4"
                     /coded_by="XM_054068957.1:7..2568"
                     /db_xref="GeneID:104056340"
ORIGIN      
        1 mrlrrapctp gergpaekgg pggfdegprh rpgrfgvake ilgftwivwc iwpifsrmne
       61 mnlspvgmdq ltsssvsnal pvsgshlgla aspthnaipa pglpvaipnl gpslsslpsa
      121 lslmlpmgig drgvmcgipe rnytlppppy phlessyfrh ilpgilsyla drpppqyihp
      181 ntinvdsnpa lsvssnpsal dpyqpsgtvg lepgivsmds ravnthgaqn lhpsdshdva
      241 ldttitmesv srvtspistd gmteeltmdd vagdhsqipn gsqsheplav dtvgsnltsd
      301 avghggvipi hgstlelpvv mepdhiagrv tgisdstlnd sihtvamstn svsvalstsh
      361 nlasldsval hevglslepv avssinqeva mgpshvdvsa dnlafvpssl qmedsnsnke
      421 nmatlftiwc tlcdkaypsd cpdhgpvtfv pdtpiesrar lslpkqlvlr qsimgaemgv
      481 wtretipvrt cfgpligqqs hslevadwtd kvashiwkiy hngvlefcvi tadenecnwm
      541 mfvrkarnre eqnlvayphd gkiyfctsrd ippehellfy ysrdyarqlg vpdhpdvhmc
      601 hcgkecasya dfkahlsshi hnhlpsqghs sshgaghgre rkwkcsmcpq afispsklhi
      661 hfmghmgmkp hkcdfcskaf sdpsnlrthl kihtgqknyr ctlcdksftq kahleshmvi
      721 htgeknlkcd yceklfmrrq dlkqhvltht qeqqikcpkc dklflrtnhl kkhlnshegk
      781 rdyvcekcsk ayltkyhltr hlkickgpts slsapeeeee edseeelids mrtedcrinn
      841 gvystgdalp ghk
//
LOCUS       XP_053924940             807 aa            linear   VRT 09-MAR-2023
DEFINITION  PR domain zinc finger protein 4 isoform X3 [Cuculus canorus].
ACCESSION   XP_053924940
VERSION     XP_053924940.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068965.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..807
                     /product="PR domain zinc finger protein 4 isoform X3"
                     /calculated_mol_wt=88634
     Region          365..402
                     /region_name="zf_PR_Knuckle"
                     /note="PR zinc knuckle motif; pfam18445"
                     /db_xref="CDD:375871"
     Region          405..544
                     /region_name="PR-SET_PRDM4"
                     /note="PR-SET domain found in PR domain zinc finger
                     protein 4 (PRDM4) and similar proteins; cd19189"
                     /db_xref="CDD:380966"
     Site            order(423..425,449,469..472,482,495..499,501,510..511,
                     535..536)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:380966"
     Site            order(423..425,469,495..499,501,535)
                     /site_type="other"
                     /note="putative SAM binding site"
                     /db_xref="CDD:380966"
     Region          554..573
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          <569..744
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          599..619
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          627..647
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(632,634,636,638..639,642..643,646,660,662,666..667,
                     670..671,674,688,690,692,694..695,698..699,702)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          639..664
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          655..675
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          667..690
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          683..703
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          711..731
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          739..758
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..807
                     /gene="PRDM4"
                     /coded_by="XM_054068965.1:79..2502"
                     /db_xref="GeneID:104056340"
ORIGIN      
        1 mhprmnemnl spvgmdqlts ssvsnalpvs gshlglaasp thnaipapgl pvaipnlgps
       61 lsslpsalsl mlpmgigdrg vmcgiperny tlppppyphl essyfrhilp gilsyladrp
      121 ppqyihpnti nvdsnpalsv ssnpsaldpy qpsgtvglep givsmdsrav nthgaqnlhp
      181 sdshdvaldt titmesvsrv tspistdgmt eeltmddvag dhsqipngsq sheplavdtv
      241 gsnltsdavg hggvipihgs tlelpvvmep dhiagrvtgi sdstlndsih tvamstnsvs
      301 valstshnla sldsvalhev glslepvavs sinqevamgp shvdvsadnl afvpsslqme
      361 dsnsnkenma tlftiwctlc dkaypsdcpd hgpvtfvpdt piesrarlsl pkqlvlrqsi
      421 mgaemdfgll ligvwtreti pvrtcfgpli gqqshsleva dwtdkvashi wkiyhngvle
      481 fcvitadene cnwmmfvrka rnreeqnlva yphdgkiyfc tsrdippehe llfyysrdya
      541 rqlgvpdhpd vhmchcgkec asyadfkahl sshihnhlps qghssshgag hgrerkwkcs
      601 mcpqafisps klhihfmghm gmkphkcdfc skafsdpsnl rthlkihtgq knyrctlcdk
      661 sftqkahles hmvihtgekn lkcdyceklf mrrqdlkqhv lthtqeqqik cpkcdklflr
      721 tnhlkkhlns hegkrdyvce kcskayltky hltrhlkick gptsslsape eeeeedseee
      781 lidsmrtedc rinngvystg dalpghk
//
LOCUS       XP_053924948             803 aa            linear   VRT 09-MAR-2023
DEFINITION  PR domain zinc finger protein 4 isoform X4 [Cuculus canorus].
ACCESSION   XP_053924948
VERSION     XP_053924948.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068973.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..803
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..803
                     /product="PR domain zinc finger protein 4 isoform X4"
                     /calculated_mol_wt=88112
     Region          361..398
                     /region_name="zf_PR_Knuckle"
                     /note="PR zinc knuckle motif; pfam18445"
                     /db_xref="CDD:375871"
     Region          401..540
                     /region_name="PR-SET_PRDM4"
                     /note="PR-SET domain found in PR domain zinc finger
                     protein 4 (PRDM4) and similar proteins; cd19189"
                     /db_xref="CDD:380966"
     Site            order(419..421,445,465..468,478,491..495,497,506..507,
                     531..532)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:380966"
     Site            order(419..421,465,491..495,497,531)
                     /site_type="other"
                     /note="putative SAM binding site"
                     /db_xref="CDD:380966"
     Region          550..569
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          <565..740
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          595..615
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          623..643
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(628,630,632,634..635,638..639,642,656,658,662..663,
                     666..667,670,684,686,688,690..691,694..695,698)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          635..660
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          651..671
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          663..686
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          679..699
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          707..727
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          735..754
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..803
                     /gene="PRDM4"
                     /coded_by="XM_054068973.1:147..2558"
                     /db_xref="GeneID:104056340"
ORIGIN      
        1 mnemnlspvg mdqltsssvs nalpvsgshl glaaspthna ipapglpvai pnlgpslssl
       61 psalslmlpm gigdrgvmcg ipernytlpp ppyphlessy frhilpgils yladrpppqy
      121 ihpntinvds npalsvssnp saldpyqpsg tvglepgivs mdsravnthg aqnlhpsdsh
      181 dvaldttitm esvsrvtspi stdgmteelt mddvagdhsq ipngsqshep lavdtvgsnl
      241 tsdavghggv ipihgstlel pvvmepdhia grvtgisdst lndsihtvam stnsvsvals
      301 tshnlaslds valhevglsl epvavssinq evamgpshvd vsadnlafvp sslqmedsns
      361 nkenmatlft iwctlcdkay psdcpdhgpv tfvpdtpies rarlslpkql vlrqsimgae
      421 mdfgllligv wtretipvrt cfgpligqqs hslevadwtd kvashiwkiy hngvlefcvi
      481 tadenecnwm mfvrkarnre eqnlvayphd gkiyfctsrd ippehellfy ysrdyarqlg
      541 vpdhpdvhmc hcgkecasya dfkahlsshi hnhlpsqghs sshgaghgre rkwkcsmcpq
      601 afispsklhi hfmghmgmkp hkcdfcskaf sdpsnlrthl kihtgqknyr ctlcdksftq
      661 kahleshmvi htgeknlkcd yceklfmrrq dlkqhvltht qeqqikcpkc dklflrtnhl
      721 kkhlnshegk rdyvcekcsk ayltkyhltr hlkickgpts slsapeeeee edseeelids
      781 mrtedcrinn gvystgdalp ghk
//
LOCUS       XP_053924954             803 aa            linear   VRT 09-MAR-2023
DEFINITION  PR domain zinc finger protein 4 isoform X4 [Cuculus canorus].
ACCESSION   XP_053924954
VERSION     XP_053924954.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068979.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..803
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..803
                     /product="PR domain zinc finger protein 4 isoform X4"
                     /calculated_mol_wt=88112
     Region          361..398
                     /region_name="zf_PR_Knuckle"
                     /note="PR zinc knuckle motif; pfam18445"
                     /db_xref="CDD:375871"
     Region          401..540
                     /region_name="PR-SET_PRDM4"
                     /note="PR-SET domain found in PR domain zinc finger
                     protein 4 (PRDM4) and similar proteins; cd19189"
                     /db_xref="CDD:380966"
     Site            order(419..421,445,465..468,478,491..495,497,506..507,
                     531..532)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:380966"
     Site            order(419..421,465,491..495,497,531)
                     /site_type="other"
                     /note="putative SAM binding site"
                     /db_xref="CDD:380966"
     Region          550..569
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          <565..740
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          595..615
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          623..643
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(628,630,632,634..635,638..639,642,656,658,662..663,
                     666..667,670,684,686,688,690..691,694..695,698)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          635..660
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          651..671
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          663..686
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          679..699
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          707..727
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          735..754
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..803
                     /gene="PRDM4"
                     /coded_by="XM_054068979.1:134..2545"
                     /db_xref="GeneID:104056340"
ORIGIN      
        1 mnemnlspvg mdqltsssvs nalpvsgshl glaaspthna ipapglpvai pnlgpslssl
       61 psalslmlpm gigdrgvmcg ipernytlpp ppyphlessy frhilpgils yladrpppqy
      121 ihpntinvds npalsvssnp saldpyqpsg tvglepgivs mdsravnthg aqnlhpsdsh
      181 dvaldttitm esvsrvtspi stdgmteelt mddvagdhsq ipngsqshep lavdtvgsnl
      241 tsdavghggv ipihgstlel pvvmepdhia grvtgisdst lndsihtvam stnsvsvals
      301 tshnlaslds valhevglsl epvavssinq evamgpshvd vsadnlafvp sslqmedsns
      361 nkenmatlft iwctlcdkay psdcpdhgpv tfvpdtpies rarlslpkql vlrqsimgae
      421 mdfgllligv wtretipvrt cfgpligqqs hslevadwtd kvashiwkiy hngvlefcvi
      481 tadenecnwm mfvrkarnre eqnlvayphd gkiyfctsrd ippehellfy ysrdyarqlg
      541 vpdhpdvhmc hcgkecasya dfkahlsshi hnhlpsqghs sshgaghgre rkwkcsmcpq
      601 afispsklhi hfmghmgmkp hkcdfcskaf sdpsnlrthl kihtgqknyr ctlcdksftq
      661 kahleshmvi htgeknlkcd yceklfmrrq dlkqhvltht qeqqikcpkc dklflrtnhl
      721 kkhlnshegk rdyvcekcsk ayltkyhltr hlkickgpts slsapeeeee edseeelids
      781 mrtedcrinn gvystgdalp ghk
//
LOCUS       XP_053924965             494 aa            linear   VRT 09-MAR-2023
DEFINITION  periodic tryptophan protein 1 homolog [Cuculus canorus].
ACCESSION   XP_053924965
VERSION     XP_053924965.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068990.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..494
                     /product="periodic tryptophan protein 1 homolog"
                     /calculated_mol_wt=54667
     Region          166..245
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <186..452
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          250..287
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          294..333
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          336..373
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          381..420
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          425..449
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..494
                     /gene="PWP1"
                     /coded_by="XM_054068990.1:119..1603"
                     /db_xref="GeneID:104056338"
ORIGIN      
        1 mscpvtcaaw vrcgvaketp dkvqlseeel nrlieesqar rgdgtddsde gqmandtnep
       61 vpgrdesshk nedlsddelg eydlenydee ectgdlklgd slatlavhgs nehdpyitlk
      121 tteqyeqedf mikptdnlvl cgrvdkdycs levhvynhee dsfyvhhdii lpayplslew
      181 lnfdpspdes pgnyvavgnm tpvidiwdld vveslepvfs lggkkdkkkk nkgkqslsse
      241 gtvkghtdav ldlswnrqsr nvlasasads avilwdmavg kpaaslmqht dkvqtlqfhp
      301 fetqtlvsgs ydksavlydc rnpqdnhriw rfsgqvervt wnhfspcnfl astedgfvyc
      361 ldaradkplf tlkahdeevs glqlssqikg clvtssadky vkiwdilgdk pslihsrnmk
      421 mgvlfcaacc pdfpfvfafg gerqglrvwd iskisavnea fgnrerlvla dantaacgst
      481 agsssndset ames
//
LOCUS       XP_053924972            2305 aa            linear   VRT 09-MAR-2023
DEFINITION  bromodomain and WD repeat-containing protein 1 [Cuculus canorus].
ACCESSION   XP_053924972
VERSION     XP_053924972.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054068997.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2305
                     /product="bromodomain and WD repeat-containing protein 1"
                     /calculated_mol_wt=260658
     Region          <183..502
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          192..229
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          235..271
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          276..321
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          329..368
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          374..411
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          432..468
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          474..499
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1150..1265
                     /region_name="Bromo_WDR9_I_like"
                     /note="Bromodomain; WDR9 repeat I_like subfamily. WDR9 is
                     a human gene located in the Down Syndrome critical
                     region-2 of chromosome 21. It encodes for a nuclear
                     protein containing WD40 repeats and two bromodomains,
                     which may function as a transcriptional...; cd05529"
                     /db_xref="CDD:99958"
     Site            order(1190,1195,1198,1237,1241,1247)
                     /site_type="other"
                     /note="putative acetyllysine binding site [chemical
                     binding]"
                     /db_xref="CDD:99958"
     Region          1316..1434
                     /region_name="Bromo_WDR9_II"
                     /note="Bromodomain; WDR9 repeat II_like subfamily. WDR9 is
                     a human gene located in the Down Syndrome critical
                     region-2 of chromosome 21. It encodes for a nuclear
                     protein containing WD40 repeats and two bromodomains,
                     which may function as a transcriptional...; cd05496"
                     /db_xref="CDD:99928"
     Site            order(1345,1350,1353,1392,1396,1403)
                     /site_type="other"
                     /note="putative acetyllysine binding site [chemical
                     binding]"
                     /db_xref="CDD:99928"
     Region          <2021..2265
                     /region_name="PTZ00108"
                     /note="DNA topoisomerase 2-like protein; Provisional"
                     /db_xref="CDD:240271"
     CDS             1..2305
                     /gene="BRWD1"
                     /coded_by="XM_054068997.1:175..7092"
                     /db_xref="GeneID:104059230"
ORIGIN      
        1 maegsaspsp gaslpliese lyfliarflt tgpcrralsv lvqeleqhql lpkrldwqgn
       61 ehyrsyeelv qsnkhvapdh llqickrigp ildkeippsi srvnsllgag rqsllrtakd
      121 crntvwkgsa faalhrgrpp efpvnygtpp nlvevhrakq ltgyakfsts fpgnmyqhik
      181 mhrrilghls svycvafdrt ghriftgsdd clvkiwsthn grllatlrgh saeisdmavn
      241 yentmiaags cdkmirvwcl rtcapvavlh ghtgsitslq fspmvkgslr ymvstgadgt
      301 vcfwqwdtdt mkfnnrpvkf tekprpgvqm lcssfsvggm flatgstdhv irmyffgset
      361 pekiaelesh adkvdsiqfs nsgdrfisgs rdgtariwrf eqaewrsvll dmsdrlpgda
      421 cseedkfmkp kvtmiawnqn dnyvvtavnn hllkvwnsct gqllhdlvgh adevfvleth
      481 pfdsrimlsa ghdgnifiwd itkgtktkhy fnmiegqghg avfdckfspd gqhfactdsh
      541 ghllifgfgc srpyekipdq mffhtdyrpl irdsnnyvld eqtqqaphlm pppflvdvdg
      601 nphptkyqrl vpgrencade hlipqlgyva tsdgevveqv igqqtvdqde qglepsildg
      661 mirqlqlqqd qriaadqesa asspqngegt prrafrrpsl diqsppnigl rrsgqvegvr
      721 qmhqnaprsq materdlqaw rrrvvvpeip pslfrkqedy riakgeeere lyaiekkksf
      781 esmeksdses sliqskrrly rqkyrnyrtr nnieqlessd eerddclgli eqeaeesegs
      841 gssdeeeewr sdkksnddss sdsssrysdw iadaginlqp pvrtsrrkvi rycstsedev
      901 saekssppkr rrrkrrkkpk pkkqeeanap tqpvnlelsy dwhppvwitd talrrspfvp
      961 qmgdeviyfr qgheayieav rrnniyklnp hkepwrkvvl rdqelvkivg iryevgpptl
     1021 cclklafidh atgkhtdksf siryhdmpdv idflilrqfy dearqrnwqa sdrfrsiidd
     1081 awwfgtvlgq epyqpqypds hfqcysvkwd ngeieklspw dmepvpdnvh qpeelgasvs
     1141 vtfeevekll ykpqegewgm rsrdeaceri isgidqlltl disaafagpv dlctypkyct
     1201 viayptdlnt irtrlanrfy rrisalvwev ryiesnartf nepgsaiara akkittqllk
     1261 findqdctni felcsttdee qdyldtdlde kclprtsyrr rkgrglkkgk nlktgydenc
     1321 wkkqcmelvn lifqcedsep frqpvdldqy pdyrhiidtp mdfgtvketl eagnydtpme
     1381 lckdirlifs naksytpnkk skiysmtlrl salfeekirr ivsdfkngqk qneklrrnkr
     1441 ytrrlhnqss vqqptkmvrn lkqkplksqa kieseqedsf iqptssratc vashktnasn
     1501 ynrsssgess dsaclasfer ngkarsttlt ncsalssese iegslvsssa sssssmssse
     1561 dskessvalv spplhngvrr rknsnrrltr nqaaqrkqig tllqengntr ktvrkklygs
     1621 dsentsvats aslsnstgrh rktprrsaav aanklrlmsd veeevssses igigcknrkl
     1681 phrnasaaar rmllegsedd vglkseseke ikeqltkrrs lsqpgssavr rrfvseseng
     1741 tsdsetdaqm kqknwqsngi kplrgtalsi spkmrsptle fseddcksrn sehgsspkvs
     1801 dqstsahnkp vvsnsedead sgsdrwdgrk atglqliapl kkakvlsdle dtaesgtedr
     1861 qdggfvsesl lpttiagssk sgagtsfshs nsesetdsnn snycetslki kkrkrkgrpk
     1921 iirkesksee tgqsakvlrs rtcvinykkh iklsnvtekk sprrcaalaa nkikimsdtk
     1981 eeisssesvr rvkknrrqlh gnvsaasrkk lmgssetdac lksenekeql sgrkkfscpe
     2041 ssapkrkyis esenektdsd teikvtekqs ddnkqahttv cavalnlsyg sseenstnhk
     2101 menggnwess sqstsahnhr msnseeevds dltkhktksi kevskkksra pskrsklldn
     2161 lkettqsete gkkdeknavs enleapgtag sskvsfnccs gsdsgtdnsi csdatetrkr
     2221 krkleivqke itnsnspkps rrpqrrkrwk pnqendsedl dyikyrranr rskirtrngg
     2281 krtvrydncd eddddrgldy vdcet
//
LOCUS       XP_053924983             936 aa            linear   VRT 09-MAR-2023
DEFINITION  protein O-mannosyl-transferase TMTC1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053924983
VERSION     XP_053924983.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069008.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..936
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..936
                     /product="protein O-mannosyl-transferase TMTC1 isoform X1"
                     /calculated_mol_wt=105228
     Region          348..421
                     /region_name="TMTC_DUF1736"
                     /note="Protein O-mannosyl-transferase TMTC, DUF1736;
                     pfam08409"
                     /db_xref="CDD:462468"
     Region          539..567
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(540,543..544,547..548,550,574,577..578,581..582,605,
                     608..609,612..613,616)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          543..803
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          572..599
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          604..632
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          638..666
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(639,642..643,646..647,649,673,676..677,680..681,
                     683..684,707,710..711,714..715,718)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          671..701
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          679..934
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          706..734
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          739..765
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          772..802
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(808,811..812,815..816,818,846,849..850,853..854,
                     856..857,880,883..884,887..888,891)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          808..835
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          840..874
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          879..907
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..936
                     /gene="TMTC1"
                     /coded_by="XM_054069008.1:161..2971"
                     /db_xref="GeneID:104056354"
ORIGIN      
        1 mvtalgsrgg eraapprcps paalaalvla glcalcygns lrgefvhddv waivnnpdvr
       61 agspvaaafa ndfwgkrmde ntshksyrpl cvltfklnil lagmnpfyfh avnvilhclv
      121 tlvlmytcdk avfkdcrlaf vtalffavhp ihteavtgiv gradvlacll fllaflsynr
      181 svdqlyvgeh fpptaspffl llslflgtca mlvketgitv fgvclvydff slscnglklr
      241 nggihqrtar qpaaspsall qvppsgreng khrfahrgtw sschpassee qrsgglsvps
      301 kamwairsyl tannnqnfly tarpflkraa lvigyvilvl yfrlwimggs mpmfseqdnp
      361 asfspylltr fltysyllaf nawlllapit lcydwqvgsi pliesiwdar nlatvflvvv
      421 mtllslhcva afkklehkev lvgllflvfp fipasnlffr vgfvvaervl ympsmgycil
      481 fvhglkklst clnkwritvl tlfalllllf swktvkqnei wlsreslfss gvktlphnak
      541 vhynyanflk dqgrnieaiy hyktalklyp rhasalnnlg tltkdvveak dyyrralqln
      601 pqhnralfnl gnllksqgkk eeavillrds ikygpefada ysslasllae qerfkeaeev
      661 ykagiencpe ssdlhnnygv flvdtgaper avshyrqaih lspahhvamv nlgrlhrslg
      721 qnkeaeawyk ralkvsrkae ilsplgalyy ntgryeealq vyreaaslqp snkeirlala
      781 qvlammgrtk eaekmtnhil sedaeclecf rllsaiyskq erytkaleai ekalqlkpkd
      841 pkviselfft kgnqlreqnl ldkafesykr avelnpdqaq awmnmggieh ikgsyiaarg
      901 yyekalqlvp nskllkenla kldrlekrfq evrekd
//
LOCUS       XP_053924990             881 aa            linear   VRT 09-MAR-2023
DEFINITION  protein O-mannosyl-transferase TMTC1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053924990
VERSION     XP_053924990.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069015.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..881
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..881
                     /product="protein O-mannosyl-transferase TMTC1 isoform X2"
                     /calculated_mol_wt=98742
     Region          348..421
                     /region_name="TMTC_DUF1736"
                     /note="Protein O-mannosyl-transferase TMTC, DUF1736;
                     pfam08409"
                     /db_xref="CDD:462468"
     Region          484..512
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(485,488..489,492..493,495,519,522..523,526..527,550,
                     553..554,557..558,561)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          488..748
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          517..544
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          549..577
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          583..611
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(584,587..588,591..592,594,618,621..622,625..626,
                     628..629,652,655..656,659..660,663)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          616..646
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          624..879
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          651..679
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          684..710
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          717..747
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(753,756..757,760..761,763,791,794..795,798..799,
                     801..802,825,828..829,832..833,836)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          753..780
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          785..819
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          824..852
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..881
                     /gene="TMTC1"
                     /coded_by="XM_054069015.1:162..2807"
                     /db_xref="GeneID:104056354"
ORIGIN      
        1 mvtalgsrgg eraapprcps paalaalvla glcalcygns lrgefvhddv waivnnpdvr
       61 agspvaaafa ndfwgkrmde ntshksyrpl cvltfklnil lagmnpfyfh avnvilhclv
      121 tlvlmytcdk avfkdcrlaf vtalffavhp ihteavtgiv gradvlacll fllaflsynr
      181 svdqlyvgeh fpptaspffl llslflgtca mlvketgitv fgvclvydff slscnglklr
      241 nggihqrtar qpaaspsall qvppsgreng khrfahrgtw sschpassee qrsgglsvps
      301 kamwairsyl tannnqnfly tarpflkraa lvigyvilvl yfrlwimggs mpmfseqdnp
      361 asfspylltr fltysyllaf nawlllapit lcydwqvgsi pliesiwdar nlatvflvvv
      421 mtllslhcva afkklehkev lvgllflvfp fipasnlffr vgfvvaervl ympssgvktl
      481 phnakvhyny anflkdqgrn ieaiyhykta lklyprhasa lnnlgtltkd vveakdyyrr
      541 alqlnpqhnr alfnlgnllk sqgkkeeavi llrdsikygp efadayssla sllaeqerfk
      601 eaeevykagi encpessdlh nnygvflvdt gaperavshy rqaihlspah hvamvnlgrl
      661 hrslgqnkea eawykralkv srkaeilspl galyyntgry eealqvyrea aslqpsnkei
      721 rlalaqvlam mgrtkeaekm tnhilsedae clecfrllsa iyskqerytk aleaiekalq
      781 lkpkdpkvis elfftkgnql reqnlldkaf esykraveln pdqaqawmnm ggiehikgsy
      841 iaargyyeka lqlvpnskll kenlakldrl ekrfqevrek d
//
LOCUS       XP_053925001             510 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-secretase 2 [Cuculus canorus].
ACCESSION   XP_053925001
VERSION     XP_053925001.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069026.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..510
                     /product="beta-secretase 2"
                     /calculated_mol_wt=54797
     Region          83..444
                     /region_name="beta_secretase_like"
                     /note="Beta-secretase, aspartic-acid protease important in
                     the pathogenesis of Alzheimer's disease; cd05473"
                     /db_xref="CDD:133140"
     Site            order(83,104,106,143..145,182,200,267,297,299..301,376,
                     389)
                     /site_type="active"
                     /note="inhibitor binding site [active]"
                     /db_xref="CDD:133140"
     Site            order(104..107,297..300)
                     /site_type="active"
                     /note="catalytic motif [active]"
                     /db_xref="CDD:133140"
     Site            order(104,297)
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:133140"
     Site            order(140..143,147..150)
                     /site_type="active"
                     /note="Active site flap [active]"
                     /db_xref="CDD:133140"
     CDS             1..510
                     /gene="BACE2"
                     /coded_by="XM_054069026.1:274..1806"
                     /db_xref="GeneID:104059266"
ORIGIN      
        1 mgtplaapal llllagalgl cralfsvplr vsrpaapags lpepvvlrqq eplgsaggla
       61 lasdpggaln flamvdnlqg dsgrgyylei ligtppqaln ilvdtgssnf avagvpdpdv
      121 tsyfntdlsn tykpqgidvt vkysqgswtg vlgtdvitip kgidgsytin iavilesenf
      181 flpgvkwqgi lglaynalak psssvetffd slvrqakipn vfslqmcgag lpvsgsgtng
      241 gslvlggiep slykgdiwyt pikeqwyyqv eilklevggq nleldcreyn adkaivdsgt
      301 tllrlpqkvf ialvqaiart sliqefssgf wtgsqlacwd ktekpwslfp klsiylrden
      361 ssrsfrisil pqlyiqpilg igenlqcyrf gissssnalv igatvmegfy vifdraqrrv
      421 gfavspcaev dgspvseieg pfttadvasn cvssvsfqel wiasyalmsl cgvillvlii
      481 rplissrcqh pysdndvvnd esslvrhrwk
//
LOCUS       XP_053925012             965 aa            linear   VRT 09-MAR-2023
DEFINITION  angiomotin-like protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053925012
VERSION     XP_053925012.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069037.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..965
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..965
                     /product="angiomotin-like protein 1 isoform X1"
                     /calculated_mol_wt=106400
     Region          <440..706
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     Region          617..823
                     /region_name="Angiomotin_C"
                     /note="Angiomotin C terminal; pfam12240"
                     /db_xref="CDD:463503"
     CDS             1..965
                     /gene="AMOTL1"
                     /coded_by="XM_054069037.1:1106..4003"
                     /db_xref="GeneID:104064183"
ORIGIN      
        1 mdpgenwkld einwlshsgi hsfasvkgdn elsegapalf aldqlgstsv cykptspvqv
       61 lentgflyqd hqlfagrhev spitaeaasa kekaaeealc tlrppsfrrv peaemrgaee
      121 vaagtvlqrl iqerlrygnp senmnllaiq hqatgsagps nstastlssa enlvpeeppm
      181 vqpsgrqepq gqehqgdgaa mekqprapqp phgteelpty eeakaqsqff rgqpsattaa
      241 atafygsssq ksrtegrptv nransgqahk dealkelkqg hvrslserim qlslerngak
      301 qhppplaggk gfkaapppgk ttdprgpppe ypykgkvatp sskaqehglf ygeqpaqdvl
      361 kasyatpqpa raevalvryq pppeygvssr qcqppfappp aqqhspmssq attgallpgt
      421 lpplpapaaa qpptptplgq qltpdafaiv eraqqmveml seenhvlrqe legyyekadk
      481 lqkfeieiqr iseayeglvk tttkresldk amrnklegei rrlhdfnrdl rerletanrq
      541 lasrdfdghe dksteglyvs qnkehlkeke klemelaavr sanedqrrhi eildqalnna
      601 qakvikleee lrrkqayvek veklqqaltq lqaacekreq merrlrtrle reldslrmqq
      661 rqgsyqassl pehnapalme lvrekeeril aleadmtkwe qkyleestir hfamnaaata
      721 aterdgsaps hsrngsyges alevrgwqee eeivqanrrc qdmeytiknl hakiiekdam
      781 ikvlqqrsrk dpgkadsasl rparsvpsia aatgvhsrqt sltsnqiaee kkeekiwkgs
      841 iglllgkehh dhpsgpslpp plpslscmpv pvpaashtkt gskdsstqtd kstelfwpat
      901 asfpgrgrlg ttpshspvpr ppgtrvasek lensshgklp dskgkvssll hkpefpdtdm
      961 mevli
//
LOCUS       XP_053925020             950 aa            linear   VRT 09-MAR-2023
DEFINITION  angiomotin-like protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053925020
VERSION     XP_053925020.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069045.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..950
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..950
                     /product="angiomotin-like protein 1 isoform X2"
                     /calculated_mol_wt=104567
     Region          <425..691
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     Region          602..808
                     /region_name="Angiomotin_C"
                     /note="Angiomotin C terminal; pfam12240"
                     /db_xref="CDD:463503"
     CDS             1..950
                     /gene="AMOTL1"
                     /coded_by="XM_054069045.1:1014..3866"
                     /db_xref="GeneID:104064183"
ORIGIN      
        1 mvflagditg vlsdnelseg apalfaldql gstsvcykpt spvqvlentg flyqdhqlfa
       61 grhevspita eaasakekaa eealctlrpp sfrrvpeaem rgaeevaagt vlqrliqerl
      121 rygnpsenmn llaiqhqatg sagpsnstas tlssaenlvp eeppmvqpsg rqepqgqehq
      181 gdgaamekqp rapqpphgte elptyeeaka qsqffrgqps attaaatafy gsssqksrte
      241 grptvnrans gqahkdealk elkqghvrsl serimqlsle rngakqhppp laggkgfkaa
      301 pppgkttdpr gpppeypykg kvatpsskaq ehglfygeqp aqdvlkasya tpqparaeva
      361 lvryqpppey gvssrqcqpp fapppaqqhs pmssqattga llpgtlpplp apaaaqpptp
      421 tplgqqltpd afaiveraqq mvemlseenh vlrqelegyy ekadklqkfe ieiqriseay
      481 eglvktttkr esldkamrnk legeirrlhd fnrdlrerle tanrqlasrd fdghedkste
      541 glyvsqnkeh lkekekleme laavrsaned qrrhieildq alnnaqakvi kleeelrrkq
      601 ayvekveklq qaltqlqaac ekreqmerrl rtrlerelds lrmqqrqgsy qasslpehna
      661 palmelvrek eerilalead mtkweqkyle estirhfamn aaataaterd gsapshsrng
      721 sygesalevr gwqeeeeivq anrrcqdmey tiknlhakii ekdamikvlq qrsrkdpgka
      781 dsaslrpars vpsiaaatgv hsrqtsltsn qiaeekkeek iwkgsiglll gkehhdhpsg
      841 pslppplpsl scmpvpvpaa shtktgskds stqtdkstel fwpatasfpg rgrlgttpsh
      901 spvprppgtr vaseklenss hgklpdskgk vssllhkpef pdtdmmevli
//
LOCUS       XP_053925026             934 aa            linear   VRT 09-MAR-2023
DEFINITION  angiomotin-like protein 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053925026
VERSION     XP_053925026.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069051.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..934
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..934
                     /product="angiomotin-like protein 1 isoform X3"
                     /calculated_mol_wt=102674
     Region          <409..675
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     Region          586..792
                     /region_name="Angiomotin_C"
                     /note="Angiomotin C terminal; pfam12240"
                     /db_xref="CDD:463503"
     CDS             1..934
                     /gene="AMOTL1"
                     /coded_by="XM_054069051.1:57..2861"
                     /db_xref="GeneID:104064183"
ORIGIN      
        1 masvlpgaag rgaggstsvc ykptspvqvl entgflyqdh qlfagrhevs pitaeaasak
       61 ekaaeealct lrppsfrrvp eaemrgaeev aagtvlqrli qerlrygnps enmnllaiqh
      121 qatgsagpsn stastlssae nlvpeeppmv qpsgrqepqg qehqgdgaam ekqprapqpp
      181 hgteelptye eakaqsqffr gqpsattaaa tafygsssqk srtegrptvn ransgqahkd
      241 ealkelkqgh vrslserimq lslerngakq hppplaggkg fkaapppgkt tdprgpppey
      301 pykgkvatps skaqehglfy geqpaqdvlk asyatpqpar aevalvryqp ppeygvssrq
      361 cqppfapppa qqhspmssqa ttgallpgtl pplpapaaaq pptptplgqq ltpdafaive
      421 raqqmvemls eenhvlrqel egyyekadkl qkfeieiqri seayeglvkt ttkresldka
      481 mrnklegeir rlhdfnrdlr erletanrql asrdfdghed ksteglyvsq nkehlkekek
      541 lemelaavrs anedqrrhie ildqalnnaq akvikleeel rrkqayvekv eklqqaltql
      601 qaacekreqm errlrtrler eldslrmqqr qgsyqasslp ehnapalmel vrekeerila
      661 leadmtkweq kyleestirh famnaaataa terdgsapsh srngsygesa levrgwqeee
      721 eivqanrrcq dmeytiknlh akiiekdami kvlqqrsrkd pgkadsaslr parsvpsiaa
      781 atgvhsrqts ltsnqiaeek keekiwkgsi glllgkehhd hpsgpslppp lpslscmpvp
      841 vpaashtktg skdsstqtdk stelfwpata sfpgrgrlgt tpshspvprp pgtrvasekl
      901 ensshgklpd skgkvssllh kpefpdtdmm evli
//
LOCUS       XP_053925034             933 aa            linear   VRT 09-MAR-2023
DEFINITION  angiomotin-like protein 1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053925034
VERSION     XP_053925034.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069059.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..933
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..933
                     /product="angiomotin-like protein 1 isoform X4"
                     /calculated_mol_wt=102782
     Region          <408..674
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     Region          585..791
                     /region_name="Angiomotin_C"
                     /note="Angiomotin C terminal; pfam12240"
                     /db_xref="CDD:463503"
     CDS             1..933
                     /gene="AMOTL1"
                     /coded_by="XM_054069059.1:1014..3815"
                     /db_xref="GeneID:104064183"
ORIGIN      
        1 mvflagditg vlsgstsvcy kptspvqvle ntgflyqdhq lfagrhevsp itaeaasake
       61 kaaeealctl rppsfrrvpe aemrgaeeva agtvlqrliq erlrygnpse nmnllaiqhq
      121 atgsagpsns tastlssaen lvpeeppmvq psgrqepqgq ehqgdgaame kqprapqpph
      181 gteelptyee akaqsqffrg qpsattaaat afygsssqks rtegrptvnr ansgqahkde
      241 alkelkqghv rslserimql slerngakqh ppplaggkgf kaapppgktt dprgpppeyp
      301 ykgkvatpss kaqehglfyg eqpaqdvlka syatpqpara evalvryqpp peygvssrqc
      361 qppfapppaq qhspmssqat tgallpgtlp plpapaaaqp ptptplgqql tpdafaiver
      421 aqqmvemlse enhvlrqele gyyekadklq kfeieiqris eayeglvktt tkresldkam
      481 rnklegeirr lhdfnrdlre rletanrqla srdfdghedk steglyvsqn kehlkekekl
      541 emelaavrsa nedqrrhiei ldqalnnaqa kvikleeelr rkqayvekve klqqaltqlq
      601 aacekreqme rrlrtrlere ldslrmqqrq gsyqasslpe hnapalmelv rekeerilal
      661 eadmtkweqk yleestirhf amnaaataat erdgsapshs rngsygesal evrgwqeeee
      721 ivqanrrcqd meytiknlha kiiekdamik vlqqrsrkdp gkadsaslrp arsvpsiaaa
      781 tgvhsrqtsl tsnqiaeekk eekiwkgsig lllgkehhdh psgpslpppl pslscmpvpv
      841 paashtktgs kdsstqtdks telfwpatas fpgrgrlgtt pshspvprpp gtrvasekle
      901 nsshgklpds kgkvssllhk pefpdtdmme vli
//
LOCUS       XP_053925042             923 aa            linear   VRT 09-MAR-2023
DEFINITION  angiomotin-like protein 1 isoform X5 [Cuculus canorus].
ACCESSION   XP_053925042
VERSION     XP_053925042.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069067.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..923
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..923
                     /product="angiomotin-like protein 1 isoform X5"
                     /calculated_mol_wt=101645
     Region          <440..706
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     Region          617..781
                     /region_name="Angiomotin_C"
                     /note="Angiomotin C terminal; pfam12240"
                     /db_xref="CDD:463503"
     CDS             1..923
                     /gene="AMOTL1"
                     /coded_by="XM_054069067.1:1108..3879"
                     /db_xref="GeneID:104064183"
ORIGIN      
        1 mdpgenwkld einwlshsgi hsfasvkgdn elsegapalf aldqlgstsv cykptspvqv
       61 lentgflyqd hqlfagrhev spitaeaasa kekaaeealc tlrppsfrrv peaemrgaee
      121 vaagtvlqrl iqerlrygnp senmnllaiq hqatgsagps nstastlssa enlvpeeppm
      181 vqpsgrqepq gqehqgdgaa mekqprapqp phgteelpty eeakaqsqff rgqpsattaa
      241 atafygsssq ksrtegrptv nransgqahk dealkelkqg hvrslserim qlslerngak
      301 qhppplaggk gfkaapppgk ttdprgpppe ypykgkvatp sskaqehglf ygeqpaqdvl
      361 kasyatpqpa raevalvryq pppeygvssr qcqppfappp aqqhspmssq attgallpgt
      421 lpplpapaaa qpptptplgq qltpdafaiv eraqqmveml seenhvlrqe legyyekadk
      481 lqkfeieiqr iseayeglvk tttkresldk amrnklegei rrlhdfnrdl rerletanrq
      541 lasrdfdghe dksteglyvs qnkehlkeke klemelaavr sanedqrrhi eildqalnna
      601 qakvikleee lrrkqayvek veklqqaltq lqaacekreq merrlrtrle reldslrmqq
      661 rqgsyqassl pehnapalme lvrekeeril aleadmtkwe qkyleestir hfamnaaata
      721 ateriknlha kiiekdamik vlqqrsrkdp gkadsaslrp arsvpsiaaa tgvhsrqtsl
      781 tsnqiaeekk eekiwkgsig lllgkehhdh psgpslpppl pslscmpvpv paashtktgs
      841 kdsstqtdks telfwpatas fpgrgrlgtt pshspvprpp gtrvasekle nsshgklpds
      901 kgkvssllhk pefpdtdmme vli
//
LOCUS       XP_053925048             851 aa            linear   VRT 09-MAR-2023
DEFINITION  angiomotin-like protein 1 isoform X6 [Cuculus canorus].
ACCESSION   XP_053925048
VERSION     XP_053925048.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069073.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..851
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..851
                     /product="angiomotin-like protein 1 isoform X6"
                     /calculated_mol_wt=93977
     Region          <334..>644
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          503..709
                     /region_name="Angiomotin_C"
                     /note="Angiomotin C terminal; pfam12240"
                     /db_xref="CDD:463503"
     CDS             1..851
                     /gene="AMOTL1"
                     /coded_by="XM_054069073.1:334..2889"
                     /db_xref="GeneID:104064183"
ORIGIN      
        1 mrgaeevaag tvlqrliqer lrygnpsenm nllaiqhqat gsagpsnsta stlssaenlv
       61 peeppmvqps grqepqgqeh qgdgaamekq prapqpphgt eelptyeeak aqsqffrgqp
      121 sattaaataf ygsssqksrt egrptvnran sgqahkdeal kelkqghvrs lserimqlsl
      181 erngakqhpp plaggkgfka apppgkttdp rgpppeypyk gkvatpsska qehglfygeq
      241 paqdvlkasy atpqparaev alvryqpppe ygvssrqcqp pfapppaqqh spmssqattg
      301 allpgtlppl papaaaqppt ptplgqqltp dafaiveraq qmvemlseen hvlrqelegy
      361 yekadklqkf eieiqrisea yeglvktttk resldkamrn klegeirrlh dfnrdlrerl
      421 etanrqlasr dfdghedkst eglyvsqnke hlkekeklem elaavrsane dqrrhieild
      481 qalnnaqakv ikleeelrrk qayvekvekl qqaltqlqaa cekreqmerr lrtrlereld
      541 slrmqqrqgs yqasslpehn apalmelvre keerilalea dmtkweqkyl eestirhfam
      601 naaataater dgsapshsrn gsygesalev rgwqeeeeiv qanrrcqdme ytiknlhaki
      661 iekdamikvl qqrsrkdpgk adsaslrpar svpsiaaatg vhsrqtslts nqiaeekkee
      721 kiwkgsigll lgkehhdhps gpslppplps lscmpvpvpa ashtktgskd sstqtdkste
      781 lfwpatasfp grgrlgttps hspvprppgt rvaseklens shgklpdskg kvssllhkpe
      841 fpdtdmmevl i
//
LOCUS       XP_053925058             235 aa            linear   VRT 09-MAR-2023
DEFINITION  splicing factor U2AF 35 kDa subunit isoform X1 [Cuculus canorus].
ACCESSION   XP_053925058
VERSION     XP_053925058.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069083.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..235
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..235
                     /product="splicing factor U2AF 35 kDa subunit isoform X1"
                     /calculated_mol_wt=27456
     Region          13..39
                     /region_name="zf-CCCH"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     pfam00642"
                     /db_xref="CDD:459885"
     Region          43..146
                     /region_name="RRM_U2AF35"
                     /note="RNA recognition motif (RRM) found in U2 small
                     nuclear ribonucleoprotein auxiliary factor U2AF 35 kDa
                     subunit (U2AF35); cd12538"
                     /db_xref="CDD:409954"
     Site            order(77,80..81,84..85,88..89,130..141)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409954"
     Region          149..175
                     /region_name="zf-CCCH"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     pfam00642"
                     /db_xref="CDD:459885"
     CDS             1..235
                     /gene="U2AF1"
                     /coded_by="XM_054069083.1:97..804"
                     /db_xref="GeneID:104059242"
ORIGIN      
        1 maeylasifg tekdkvncsf yfkigacrhg drcsrlhnkp tfsqtialln iyrnpqnssq
       61 sadglrcavs dvemqehyde ffeevfteme ekygeveemn vcdnlgdhlv gnvyvkfrre
      121 edaekavidl nnrwfngqpi haelspvtdf reaccrqyem gectrggfcn fmhlkpisre
      181 lrrelygrrr kkhrsrsrsr errsrsrdrg rgggggggre rdrrrsrdre rsgrf
//
LOCUS       XP_053925065             235 aa            linear   VRT 09-MAR-2023
DEFINITION  splicing factor U2AF 35 kDa subunit isoform X2 [Cuculus canorus].
ACCESSION   XP_053925065
VERSION     XP_053925065.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069090.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..235
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..235
                     /product="splicing factor U2AF 35 kDa subunit isoform X2"
                     /calculated_mol_wt=27466
     Region          13..39
                     /region_name="zf-CCCH"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     pfam00642"
                     /db_xref="CDD:459885"
     Region          43..146
                     /region_name="RRM_U2AF35"
                     /note="RNA recognition motif (RRM) found in U2 small
                     nuclear ribonucleoprotein auxiliary factor U2AF 35 kDa
                     subunit (U2AF35); cd12538"
                     /db_xref="CDD:409954"
     Site            order(77,80..81,84..85,88..89,130..141)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409954"
     Region          149..175
                     /region_name="zf-CCCH"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     pfam00642"
                     /db_xref="CDD:459885"
     CDS             1..235
                     /gene="U2AF1"
                     /coded_by="XM_054069090.1:98..805"
                     /db_xref="GeneID:104059242"
ORIGIN      
        1 maeylasifg tekdkvncsf yfkigacrhg drcsrlhnkp tfsqtiliqn iyrnpqnsaq
       61 tadgshcavs dvemqehyde ffeevfteme ekygeveemn vcdnlgdhlv gnvyvkfrre
      121 edaekavidl nnrwfngqpi haelspvtdf reaccrqyem gectrggfcn fmhlkpisre
      181 lrrelygrrr kkhrsrsrsr errsrsrdrg rgggggggre rdrrrsrdre rsgrf
//
LOCUS       XP_053925071             162 aa            linear   VRT 09-MAR-2023
DEFINITION  splicing factor U2AF 35 kDa subunit isoform X3 [Cuculus canorus].
ACCESSION   XP_053925071
VERSION     XP_053925071.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069096.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..162
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..162
                     /product="splicing factor U2AF 35 kDa subunit isoform X3"
                     /calculated_mol_wt=19299
     Region          <1..73
                     /region_name="RRM_SF"
                     /note="RNA recognition motif (RRM) superfamily; cl17169"
                     /db_xref="CDD:473069"
     Region          76..102
                     /region_name="zf-CCCH"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     pfam00642"
                     /db_xref="CDD:459885"
     CDS             1..162
                     /gene="U2AF1"
                     /coded_by="XM_054069096.1:842..1330"
                     /db_xref="GeneID:104059242"
ORIGIN      
        1 mqehydeffe evftemeeky geveemnvcd nlgdhlvgnv yvkfrreeda ekavidlnnr
       61 wfngqpihae lspvtdfrea ccrqyemgec trggfcnfmh lkpisrelrr elygrrrkkh
      121 rsrsrsrerr srsrdrgrgg gggggrerdr rrsrdrersg rf
//
LOCUS       XP_053925079             162 aa            linear   VRT 09-MAR-2023
DEFINITION  splicing factor U2AF 35 kDa subunit isoform X3 [Cuculus canorus].
ACCESSION   XP_053925079
VERSION     XP_053925079.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069104.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..162
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..162
                     /product="splicing factor U2AF 35 kDa subunit isoform X3"
                     /calculated_mol_wt=19299
     Region          <1..73
                     /region_name="RRM_SF"
                     /note="RNA recognition motif (RRM) superfamily; cl17169"
                     /db_xref="CDD:473069"
     Region          76..102
                     /region_name="zf-CCCH"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     pfam00642"
                     /db_xref="CDD:459885"
     CDS             1..162
                     /gene="U2AF1"
                     /coded_by="XM_054069104.1:909..1397"
                     /db_xref="GeneID:104059242"
ORIGIN      
        1 mqehydeffe evftemeeky geveemnvcd nlgdhlvgnv yvkfrreeda ekavidlnnr
       61 wfngqpihae lspvtdfrea ccrqyemgec trggfcnfmh lkpisrelrr elygrrrkkh
      121 rsrsrsrerr srsrdrgrgg gggggrerdr rrsrdrersg rf
//
LOCUS       XP_053925085             236 aa            linear   VRT 09-MAR-2023
DEFINITION  splicing factor U2AF 35 kDa subunit isoform X4 [Cuculus canorus].
ACCESSION   XP_053925085
VERSION     XP_053925085.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069110.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..236
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..236
                     /product="splicing factor U2AF 35 kDa subunit isoform X4"
                     /calculated_mol_wt=27537
     Region          46..147
                     /region_name="RRM_U2AF35"
                     /note="RNA recognition motif (RRM) found in U2 small
                     nuclear ribonucleoprotein auxiliary factor U2AF 35 kDa
                     subunit (U2AF35); cd12538"
                     /db_xref="CDD:409954"
     Site            order(78,81..82,85..86,89..90,131..142)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409954"
     Region          150..176
                     /region_name="zf-CCCH"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     pfam00642"
                     /db_xref="CDD:459885"
     CDS             1..236
                     /gene="U2AF1"
                     /coded_by="XM_054069110.1:708..1418"
                     /db_xref="GeneID:104059242"
ORIGIN      
        1 metdvlgctt nqhlarkrcc cklacsrvqp vltfrkldfk kngtntiliq niyrnpqnsa
       61 qtadgshcav sdvemqehyd effeevftem eekygeveem nvcdnlgdhl vgnvyvkfrr
      121 eedaekavid lnnrwfngqp ihaelspvtd freaccrqye mgectrggfc nfmhlkpisr
      181 elrrelygrr rkkhrsrsrs rerrsrsrdr grgggggggr erdrrrsrdr ersgrf
//
LOCUS       XP_053925099             284 aa            linear   VRT 09-MAR-2023
DEFINITION  Y-box-binding protein 3 [Cuculus canorus].
ACCESSION   XP_053925099
VERSION     XP_053925099.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069124.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..284
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..284
                     /product="Y-box-binding protein 3"
                     /calculated_mol_wt=30364
     Region          74..143
                     /region_name="CSD"
                     /note="'Cold-shock' DNA-binding domain; pfam00313"
                     /db_xref="CDD:278729"
     Site            order(80,89,100,133)
                     /site_type="DNA binding"
                     /note="DNA-binding site [nucleotide binding]"
                     /db_xref="CDD:239905"
     Site            order(86..92,99..102)
                     /site_type="active"
                     /note="RNA-binding motif [active]"
                     /db_xref="CDD:239905"
     CDS             1..284
                     /gene="YBX3"
                     /coded_by="XM_054069124.1:83..937"
                     /db_xref="GeneID:104060650"
ORIGIN      
        1 mseaaetsta ttatisattt sattttaaaa aapaapdtna ksptisadag eaaagaaaas
       61 tapetekkvl atkvlgtvkw fnvrngygfi nrndtkedvf vhqtaikknn prkylrsvgd
      121 getvefdvve gekgaeaanv tgpdgvpveg sryaadrrry rrgyfgrrrg pprsggegei
      181 kdgvaeggql nqqvhrnpty rpryrrgppr prpapvagea enkenhhean amsqqplrrg
      241 yrrpynyrrr prppnapaqd gketkvtemp aenpapvteq sgae
//
LOCUS       XP_053925113             694 aa            linear   VRT 09-MAR-2023
DEFINITION  trichohyalin-like isoform X1 [Cuculus canorus].
ACCESSION   XP_053925113
VERSION     XP_053925113.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069138.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..694
                     /product="trichohyalin-like isoform X1"
                     /calculated_mol_wt=80014
     Region          102..235
                     /region_name="DUF4537"
                     /note="Domain of unknown function (DUF4537); pfam15057"
                     /db_xref="CDD:464475"
     Region          <490..>694
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..694
                     /gene="LOC128852419"
                     /coded_by="XM_054069138.1:1..2085"
                     /db_xref="GeneID:128852419"
ORIGIN      
        1 mssntvssks idgslemqrr krlankdsyc glvwvshvdl vsfiaascrs slgkvfftsc
       61 ifvfcsfpvc twnpdslcmp ftssakrdli dssseasifm rgarvlarre adghyylghi
      121 aqevkgsrer fliefdksht lkrklqlrmq etplydilhy edarqqplap gdrvlapwea
      181 kaerfgpatv lkvvenkear lahsrrqvlv tfwngqtkev sseqalripl plseriilel
      241 qmplaarqmv vgssrdypyi vtpgyrasgh ysgsctslph cclaaweptg ptgckvqqed
      301 afvpgaslik gklskkveeq lsevrispse nisteeeekt dntlrteivp kdiqscleed
      361 nevieleksp qremahamvd tavntdswlm etirkeadsr qqdteteglf etrvaeapiq
      421 hsqrnpslgt nalvpfrhqs ffdqvnqsle kdsltiksal rvprpctkar rctnvlkdks
      481 itksilhgas qetrkemdfn rakiehkrwq eeqrqlkreq qqeadviqrq lcrdrqrqrl
      541 herasqelek qlerkdralq hmaqlqaaga ersrkeylll eeekrkasqk lqflktqrlq
      601 reelqaerng rsleqererl vflrsrmqsr qemleqesqe ldrqrkqhea akgrvfqsrd
      661 hshqkkekea qklcdlqqyl reqnllmlra slla
//
LOCUS       XP_053925121             683 aa            linear   VRT 09-MAR-2023
DEFINITION  trichohyalin-like isoform X2 [Cuculus canorus].
ACCESSION   XP_053925121
VERSION     XP_053925121.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069146.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..683
                     /product="trichohyalin-like isoform X2"
                     /calculated_mol_wt=78715
     Region          91..224
                     /region_name="DUF4537"
                     /note="Domain of unknown function (DUF4537); pfam15057"
                     /db_xref="CDD:464475"
     Region          <479..>683
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..683
                     /gene="LOC128852419"
                     /coded_by="XM_054069146.1:423..2474"
                     /db_xref="GeneID:128852419"
ORIGIN      
        1 mekvaeqseg pfqaigppqt asekisfvst shvqcchtan kypcgfllpr cpvthfpvct
       61 wnpdslcmpf tssakrdlid ssseasifmr garvlarrea dghyylghia qevkgsrerf
      121 liefdkshtl krklqlrmqe tplydilhye darqqplapg drvlapweak aerfgpatvl
      181 kvvenkearl ahsrrqvlvt fwngqtkevs seqalriplp lseriilelq mplaarqmvv
      241 gssrdypyiv tpgyrasghy sgsctslphc claaweptgp tgckvqqeda fvpgaslikg
      301 klskkveeql sevrispsen isteeeektd ntlrteivpk diqscleedn evielekspq
      361 remahamvdt avntdswlme tirkeadsrq qdteteglfe trvaeapiqh sqrnpslgtn
      421 alvpfrhqsf fdqvnqslek dsltiksalr vprpctkarr ctnvlkdksi tksilhgasq
      481 etrkemdfnr akiehkrwqe eqrqlkreqq qeadviqrql crdrqrqrlh erasqelekq
      541 lerkdralqh maqlqaagae rsrkeyllle eekrkasqkl qflktqrlqr eelqaerngr
      601 sleqererlv flrsrmqsrq emleqesqel drqrkqheaa kgrvfqsrdh shqkkekeaq
      661 klcdlqqylr eqnllmlras lla
//
LOCUS       XP_053925125             644 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128852419 isoform X3 [Cuculus canorus].
ACCESSION   XP_053925125
VERSION     XP_053925125.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069150.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..644
                     /product="uncharacterized protein LOC128852419 isoform X3"
                     /calculated_mol_wt=73434
     Region          102..235
                     /region_name="DUF4537"
                     /note="Domain of unknown function (DUF4537); pfam15057"
                     /db_xref="CDD:464475"
     Region          <315..598
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          <490..>624
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..644
                     /gene="LOC128852419"
                     /coded_by="XM_054069150.1:1..1935"
                     /db_xref="GeneID:128852419"
ORIGIN      
        1 mssntvssks idgslemqrr krlankdsyc glvwvshvdl vsfiaascrs slgkvfftsc
       61 ifvfcsfpvc twnpdslcmp ftssakrdli dssseasifm rgarvlarre adghyylghi
      121 aqevkgsrer fliefdksht lkrklqlrmq etplydilhy edarqqplap gdrvlapwea
      181 kaerfgpatv lkvvenkear lahsrrqvlv tfwngqtkev sseqalripl plseriilel
      241 qmplaarqmv vgssrdypyi vtpgyrasgh ysgsctslph cclaaweptg ptgckvqqed
      301 afvpgaslik gklskkveeq lsevrispse nisteeeekt dntlrteivp kdiqscleed
      361 nevieleksp qremahamvd tavntdswlm etirkeadsr qqdteteglf etrvaeapiq
      421 hsqrnpslgt nalvpfrhqs ffdqvnqsle kdsltiksal rvprpctkar rctnvlkdks
      481 itksilhgas qetrkemdfn rakiehkrwq eeqrqlkreq qqeadviqrq lcrdrqrqrl
      541 herasqelek qlerkdralq hmaqlqaaga ersrkeylll eeekrkasqk lqflktqrlq
      601 reelqaerng rsleqererl eqnavtarnv gtritgagqa akta
//
LOCUS       XP_053925129             616 aa            linear   VRT 09-MAR-2023
DEFINITION  trichohyalin-like isoform X4 [Cuculus canorus].
ACCESSION   XP_053925129
VERSION     XP_053925129.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069154.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..616
                     /product="trichohyalin-like isoform X4"
                     /calculated_mol_wt=71380
     Region          24..157
                     /region_name="DUF4537"
                     /note="Domain of unknown function (DUF4537); pfam15057"
                     /db_xref="CDD:464475"
     Region          <412..>616
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..616
                     /gene="LOC128852419"
                     /coded_by="XM_054069154.1:1881..3731"
                     /db_xref="GeneID:128852419"
ORIGIN      
        1 mpftssakrd lidssseasi fmrgarvlar readghyylg hiaqevkgsr erfliefdks
       61 htlkrklqlr mqetplydil hyedarqqpl apgdrvlapw eakaerfgpa tvlkvvenke
      121 arlahsrrqv lvtfwngqtk evsseqalri plplseriil elqmplaarq mvvgssrdyp
      181 yivtpgyras ghysgsctsl phcclaawep tgptgckvqq edafvpgasl ikgklskkve
      241 eqlsevrisp senisteeee ktdntlrtei vpkdiqscle ednevielek spqremaham
      301 vdtavntdsw lmetirkead srqqdteteg lfetrvaeap iqhsqrnpsl gtnalvpfrh
      361 qsffdqvnqs lekdsltiks alrvprpctk arrctnvlkd ksitksilhg asqetrkemd
      421 fnrakiehkr wqeeqrqlkr eqqqeadviq rqlcrdrqrq rlherasqel ekqlerkdra
      481 lqhmaqlqaa gaersrkeyl lleeekrkas qklqflktqr lqreelqaer ngrsleqere
      541 rlvflrsrmq srqemleqes qeldrqrkqh eaakgrvfqs rdhshqkkek eaqklcdlqq
      601 ylreqnllml raslla
//
LOCUS       XP_053925134             616 aa            linear   VRT 09-MAR-2023
DEFINITION  trichohyalin-like isoform X4 [Cuculus canorus].
ACCESSION   XP_053925134
VERSION     XP_053925134.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069159.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..616
                     /product="trichohyalin-like isoform X4"
                     /calculated_mol_wt=71380
     Region          24..157
                     /region_name="DUF4537"
                     /note="Domain of unknown function (DUF4537); pfam15057"
                     /db_xref="CDD:464475"
     Region          <412..>616
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..616
                     /gene="LOC128852419"
                     /coded_by="XM_054069159.1:724..2574"
                     /db_xref="GeneID:128852419"
ORIGIN      
        1 mpftssakrd lidssseasi fmrgarvlar readghyylg hiaqevkgsr erfliefdks
       61 htlkrklqlr mqetplydil hyedarqqpl apgdrvlapw eakaerfgpa tvlkvvenke
      121 arlahsrrqv lvtfwngqtk evsseqalri plplseriil elqmplaarq mvvgssrdyp
      181 yivtpgyras ghysgsctsl phcclaawep tgptgckvqq edafvpgasl ikgklskkve
      241 eqlsevrisp senisteeee ktdntlrtei vpkdiqscle ednevielek spqremaham
      301 vdtavntdsw lmetirkead srqqdteteg lfetrvaeap iqhsqrnpsl gtnalvpfrh
      361 qsffdqvnqs lekdsltiks alrvprpctk arrctnvlkd ksitksilhg asqetrkemd
      421 fnrakiehkr wqeeqrqlkr eqqqeadviq rqlcrdrqrq rlherasqel ekqlerkdra
      481 lqhmaqlqaa gaersrkeyl lleeekrkas qklqflktqr lqreelqaer ngrsleqere
      541 rlvflrsrmq srqemleqes qeldrqrkqh eaakgrvfqs rdhshqkkek eaqklcdlqq
      601 ylreqnllml raslla
//
LOCUS       XP_009558855             607 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized aarF domain-containing protein kinase 2 [Cuculus
            canorus].
ACCESSION   XP_009558855
VERSION     XP_009558855.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560560.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009558855.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..607
                     /product="uncharacterized aarF domain-containing protein
                     kinase 2"
                     /calculated_mol_wt=66701
     Region          156..533
                     /region_name="ADCK2-like"
                     /note="aarF domain containing kinase 2 and similar
                     proteins; cd13971"
                     /db_xref="CDD:270873"
     Site            order(274..277,286,288,298,300,361,380..383,425,429..430,
                     432,472..473)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:270873"
     CDS             1..607
                     /gene="ADCK2"
                     /coded_by="XM_009560560.2:18..1841"
                     /db_xref="GeneID:104058968"
ORIGIN      
        1 maagaavrll plprpllara agaraapgwg avgtvggrrv grwvavalvv paapawdarp
       61 cgavravgpq raargplwrl glaarlglra cglllrfgpl lllyplsrla prlgelwlrl
      121 lrgaaeaagp aciklgqwas trrdlfsqaf cdefsklhva vsphpwghtd evlrkafgeg
      181 wmdvltfqsr epvgsgcvaq vykgyanlaa vtgsrakela qrselrlafe awevsgfrgl
      241 lrwlqrkske mwdkrsrekv gsadhlveqv akpllnanpl parhlvpvai kvlhpglvnq
      301 vqmdlflmkm gsrilgllpg fkwlslteiv eefeklmiqq idlryearnl erfgqnflgv
      361 dfvkfptplw plvttdvlve tfeesepish ylhaevatel rqrlakmgmd mllkmvfvdn
      421 fvhgdlhpgn ilvqgtthvs tsckeqtaiv dlcdtlvvev qpslrqlclv lldagivael
      481 qsadmqnfra vftavvqgqg ervaelilhh aranqcqdve rfkaemaelv tkvrgntval
      541 gklqvanlls nvfkllmthk vklesnfasi ifaimvlegl grsldpeldi leaakpllik
      601 saasvlk
//
LOCUS       XP_053925158            1475 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-2-macroglobulin [Cuculus canorus].
ACCESSION   XP_053925158
VERSION     XP_053925158.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069183.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1475
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1475
                     /product="alpha-2-macroglobulin"
                     /calculated_mol_wt=164497
     Region          <129..1431
                     /region_name="YfaS"
                     /note="Uncharacterized conserved protein YfaS,
                     alpha-2-macroglobulin family [General function prediction
                     only]; COG2373"
                     /db_xref="CDD:441940"
     Region          962..1262
                     /region_name="A2M_2"
                     /note="Proteins similar to alpha2-macroglobulin (alpha
                     (2)-M). This group also contains the pregnancy zone
                     protein (PZP). Alpha(2)-M and PZP are broadly specific
                     proteinase inhibitors. Alpha (2)-M is a major carrier
                     protein in serum. The structural thioester...; cd02897"
                     /db_xref="CDD:239227"
     Site            order(976,978..979,982,1022,1032,1035,1088,1090..1091,
                     1246)
                     /site_type="other"
                     /note="surface patch"
                     /db_xref="CDD:239227"
     Site            976..979
                     /site_type="active"
                     /note="thioester region [active]"
                     /db_xref="CDD:239227"
     Site            order(1077,1081,1083,1091)
                     /site_type="other"
                     /note="specificity defining residues"
                     /db_xref="CDD:239227"
     CDS             1..1475
                     /gene="LOC104060659"
                     /coded_by="XM_054069183.1:70..4497"
                     /db_xref="GeneID:104060659"
ORIGIN      
        1 mrkgrlpskp nifilllffl pgntsstiep qymvllpfli htdspekvcv qlthlnesvt
       61 lsatleyqge nrsliddvvs ekdvftcipf slpksnstlv afltvmvkga tlqfksrksv
      121 lvknseslvf vqtdkpiykp gqtvlfrivs lnkdfyplne kfpfvyiqdp qrnrvyqwqe
      181 vkletgltql sfpltsdpiq gsykivvqks ftshvehyfs veeyvlpkye vlvklpkmit
      241 ikdtelpvsv cglytygkpv pglvnvkvcr kfshsasncy gkeaeevcee ftrqadargc
      301 vsgvvrtkif qlqrrgydms ievegkited gtgieitgtg scgitpvmsk isfdlldsqy
      361 rpgiplfgrv kivdgtdapi anetimisvd gdrykgnytt delgqswfsi dtttftqasl
      421 eiradhkpel ncydsdwitp syehairris rfyspsksfl kiepkpeklt cgspteiqvh
      481 yiftseaire qkeiviyylv makggiilad tydlavnpdn aygtfqltfp vdstiaplar
      541 mlvyttlssg eviassadfq vesclpnkvr ltfapkeglp asnaslqlrt sprslcalra
      601 vdksvllmkp edelspssvy dllplkqirg ysfkdyylee dnvnpcvsld nvllngfiyv
      661 pispdgegda ydilkelglk vftsnkihkp evcqhypglm mergysspia alnlledley
      721 digehmvdgs pvetirkyfp etwiwdivsv nsegnadldv tipdtitewk anafctsadt
      781 gfglsptvsl rafqpffvel tmpysvvrge sfllkatvfn ylttcirvsv slaestnfla
      841 tsvekqeesy cicmnerktv awavileslg qvefsvttea lqnqqpcgna ivetpekgrk
      901 dtvirqllve pegievetty nsvlcaseks msepvslvlp etvvdgsara yfsvlgdimg
      961 tamknlhqll qmpfgcgeqn mvlfapniyv ldylnktgql seeikskavg ylvsgyqrql
     1021 kykhwdgsys tfgprygqag ntwltafvlk sfaqarphif iddrhiqdal vwltqkqken
     1081 gcfrssgtll nnaikggvnd eitltayiti alleiplpvt hsvvrnalfc letaanekes
     1141 hvytkalmay afalagkeek rktllsslek eavkkdgsvh wqrpgkepev dlpyyhyrap
     1201 saevemtayv llahltlqst psqeelssas liakwisgqq npsggfsstq dtvvalqals
     1261 lygastyaks gaaskvtlrs ggdfqqdfqv dptnrlllqr vplpqvpgey stevsgegcv
     1321 ylqtslrynv qptqedapfm lhvytipetc edsktlkvfd iginvsytge rnesnmvivd
     1381 vkmlsgfvpv kssvrklegh pviertelst nhvlvylekl rsetfsfsft verdipvqgl
     1441 kpaqvkvydy yetdefatqe ysapctadev dqgna
//
LOCUS       XP_053925171            1518 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-2-macroglobulin isoform X1 [Cuculus canorus].
ACCESSION   XP_053925171
VERSION     XP_053925171.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069196.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1518
                     /product="alpha-2-macroglobulin isoform X1"
                     /calculated_mol_wt=169228
     Region          <131..1443
                     /region_name="YfaS"
                     /note="Uncharacterized conserved protein YfaS,
                     alpha-2-macroglobulin family [General function prediction
                     only]; COG2373"
                     /db_xref="CDD:441940"
     Region          754..844
                     /region_name="A2M"
                     /note="Alpha-2-macroglobulin family; pfam00207"
                     /db_xref="CDD:459711"
     Region          974..1274
                     /region_name="A2M_2"
                     /note="Proteins similar to alpha2-macroglobulin (alpha
                     (2)-M). This group also contains the pregnancy zone
                     protein (PZP). Alpha(2)-M and PZP are broadly specific
                     proteinase inhibitors. Alpha (2)-M is a major carrier
                     protein in serum. The structural thioester...; cd02897"
                     /db_xref="CDD:239227"
     Site            order(988,990..991,994,1034,1044,1047,1100,1102..1103,
                     1258)
                     /site_type="other"
                     /note="surface patch"
                     /db_xref="CDD:239227"
     Site            988..991
                     /site_type="active"
                     /note="thioester region [active]"
                     /db_xref="CDD:239227"
     Site            order(1089,1093,1095,1103)
                     /site_type="other"
                     /note="specificity defining residues"
                     /db_xref="CDD:239227"
     CDS             1..1518
                     /gene="LOC104060648"
                     /coded_by="XM_054069196.1:71..4627"
                     /db_xref="GeneID:104060648"
ORIGIN      
        1 mrkdwplfkp nifllllffv pgdaspatep qymvllpsvi htdspekvcv qlthlnesvt
       61 lsamleyqge nrslindvvs ekdtftcvpf slpksnspsp vtfmsvmvkg atlefrsrrl
      121 vlvensesli fvqtdkpiyk pgqtvlfriv sldkdfypln evlplvfved pknnrlyqwt
      181 kaelkggliq lffnlssepm qgtyavvaqk tsgktirhhf sveeyvlpkf evtvkmpkvi
      241 tildeklkvt vcglytfgkp vpglvsfrvc rnfrhaattc ygeeakgvcd efsgqtdnyg
      301 cvsevvktkl fqlkrngyen klhveakike eetgveltgn sfseitntis kitfertssh
      361 ykpgipffgq vklvdgsgap ianemvrisl gevlencttn eegrawfaln isklhfdslg
      421 irathkvnhh cydsawvvpy yedgylplkr fyspsnsflk iepksetlsc gsstevrvhy
      481 iltpeaigeq kkitfyylvm argvikkast hildldgesa hgvflvelpv qadiapvaqm
      541 lvyttapsre viadstkfyv eecfsnkvdl sfsppealps sdarllfras pnslcavrav
      601 dksvllmkpe adlspssvys llpvkdqrdy hydsdvllea plwncipltk iflngitysp
      661 vvevneedty silkemglkv ftntkvrkpw ycntpggspy algtiesgap mymrasgdff
      721 svsshsafrg gtvhptsats evvtetvrky fpetwiwslv tissegnanl dvtipdtite
      781 wkanafctsa gtgfglspiv slrafqpffv eltmpysvvr geaftlkatv fnylsacirv
      841 svtlaqsahf lanlvekeee shcvcengrk tvawlvsprs lgqvefsvst ealqnqqpcg
      901 naivetpekg rkdtvirqll vepegveket tqnsilcvkg epvkkkfsll lptnvvqdsg
      961 rayfsvlgdi mgtamknlhq llqmpfgcge qnmvlfapni yvldylnkte qlseevkska
     1021 igylvsgyqr qlnykhqdgs ystfgprygq pgntwltafv lksfaqarph ifidekhiqd
     1081 alvwlslkqk engcfrssgt llnnamkggv dnevsltayi tialleiplp vthsvvrnal
     1141 fcletaanek eshvytkalm ayafalagke ekrktllssl ekeavkkdgs vhwqrpgkep
     1201 evdlpyyhyr apsaevemta yvllahltlq stpsqeelss asliakwisg qqnpsggfss
     1261 tqdtvvalqa lslygastya ksgaaskvtl rsggdfqqdf qvdptnrlll qrvplpqvpg
     1321 eystevsgeg cvylqtslry nvqptqedap fmlhvytipe tcedsktlkv fdiginvsyt
     1381 gernesnmvi vdvkmlsgfv pvkssvrkle ghpviertel stnhvlvyle klrsetfsfs
     1441 ftverdipvq glkpaqvkvy dyyetdefat qeysapctav crhasrqrai lpphalcktr
     1501 lnremseeri ssescwir
//
LOCUS       XP_053925174            1508 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-2-macroglobulin isoform X2 [Cuculus canorus].
ACCESSION   XP_053925174
VERSION     XP_053925174.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069199.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1508
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1508
                     /product="alpha-2-macroglobulin isoform X2"
                     /calculated_mol_wt=168177
     Region          <131..1433
                     /region_name="YfaS"
                     /note="Uncharacterized conserved protein YfaS,
                     alpha-2-macroglobulin family [General function prediction
                     only]; COG2373"
                     /db_xref="CDD:441940"
     Region          744..834
                     /region_name="A2M"
                     /note="Alpha-2-macroglobulin family; pfam00207"
                     /db_xref="CDD:459711"
     Region          964..1264
                     /region_name="A2M_2"
                     /note="Proteins similar to alpha2-macroglobulin (alpha
                     (2)-M). This group also contains the pregnancy zone
                     protein (PZP). Alpha(2)-M and PZP are broadly specific
                     proteinase inhibitors. Alpha (2)-M is a major carrier
                     protein in serum. The structural thioester...; cd02897"
                     /db_xref="CDD:239227"
     Site            order(978,980..981,984,1024,1034,1037,1090,1092..1093,
                     1248)
                     /site_type="other"
                     /note="surface patch"
                     /db_xref="CDD:239227"
     Site            978..981
                     /site_type="active"
                     /note="thioester region [active]"
                     /db_xref="CDD:239227"
     Site            order(1079,1083,1085,1093)
                     /site_type="other"
                     /note="specificity defining residues"
                     /db_xref="CDD:239227"
     CDS             1..1508
                     /gene="LOC104060648"
                     /coded_by="XM_054069199.1:71..4597"
                     /db_xref="GeneID:104060648"
ORIGIN      
        1 mrkdwplfkp nifllllffv pgdaspatep qymvllpsvi htdspekvcv qlthlnesvt
       61 lsamleyqge nrslindvvs ekdtftcvpf slpksnspsp vtfmsvmvkg atlefrsrrl
      121 vlvensesli fvqtdkpiyk pgqtvlfriv sldkdfypln evlplvfved pknnrlyqwt
      181 kaelkggliq lffnlssepm qgtyavvaqk tsgktirhhf sveeyvlpkf evtvkmpkvi
      241 tildeklkvt vcglytfgkp vpglvsfrvc rnfrhaattc ygeeakgvcd efsgqtdnyg
      301 cvsevvktkl fqlkrngyen klhveakike eetgveltgn sfseitntis kitfertssh
      361 ykpgipffgq vklvdgsgap ianemvrisl gevlencttn eegrawfaln isklhfdslg
      421 irathkvnhh cydsawvvpy yedgylplkr fyspsnsflk iepksetlsc gsstevrvhy
      481 iltpeaigeq kkitfyylvm argvikkast hildldgesa hgvflvelpv qadiapvaqm
      541 lvyttapsre viadstkfyv eecfsnkvdl sfsppealps sdarllfras pnslcavrav
      601 dksvllmkpe adlspssvys llpvkdqrdy hydsdvllea plwncipltk iflngitysp
      661 vvevneedty silkemglkv ftntkvrkpw ycntpggspy algtiesgap mymrasafrg
      721 gtvhptsats evvtetvrky fpetwiwslv tissegnanl dvtipdtite wkanafctsa
      781 gtgfglspiv slrafqpffv eltmpysvvr geaftlkatv fnylsacirv svtlaqsahf
      841 lanlvekeee shcvcengrk tvawlvsprs lgqvefsvst ealqnqqpcg naivetpekg
      901 rkdtvirqll vepegveket tqnsilcvkg epvkkkfsll lptnvvqdsg rayfsvlgdi
      961 mgtamknlhq llqmpfgcge qnmvlfapni yvldylnkte qlseevkska igylvsgyqr
     1021 qlnykhqdgs ystfgprygq pgntwltafv lksfaqarph ifidekhiqd alvwlslkqk
     1081 engcfrssgt llnnamkggv dnevsltayi tialleiplp vthsvvrnal fcletaanek
     1141 eshvytkalm ayafalagke ekrktllssl ekeavkkdgs vhwqrpgkep evdlpyyhyr
     1201 apsaevemta yvllahltlq stpsqeelss asliakwisg qqnpsggfss tqdtvvalqa
     1261 lslygastya ksgaaskvtl rsggdfqqdf qvdptnrlll qrvplpqvpg eystevsgeg
     1321 cvylqtslry nvqptqedap fmlhvytipe tcedsktlkv fdiginvsyt gernesnmvi
     1381 vdvkmlsgfv pvkssvrkle ghpviertel stnhvlvyle klrsetfsfs ftverdipvq
     1441 glkpaqvkvy dyyetdefat qeysapctav crhasrqrai lpphalcktr lnremseeri
     1501 ssescwir
//
LOCUS       XP_053925176            1500 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-2-macroglobulin-like protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053925176
VERSION     XP_053925176.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069201.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1500
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1500
                     /product="alpha-2-macroglobulin-like protein 1 isoform X1"
                     /calculated_mol_wt=166565
     Region          158..246
                     /region_name="MG2"
                     /note="MG2 domain; pfam01835"
                     /db_xref="CDD:426464"
     Region          248..333
                     /region_name="MG3"
                     /note="Macroglobulin domain MG3; pfam17791"
                     /db_xref="CDD:465509"
     Region          376..463
                     /region_name="MG4"
                     /note="Macroglobulin domain MG4; pfam17789"
                     /db_xref="CDD:465507"
     Region          486..636
                     /region_name="A2M_BRD"
                     /note="Alpha-2-macroglobulin bait region domain;
                     pfam07703"
                     /db_xref="CDD:462235"
     Region          784..874
                     /region_name="A2M"
                     /note="Alpha-2-macroglobulin family; pfam00207"
                     /db_xref="CDD:459711"
     Region          <836..928
                     /region_name="SVA"
                     /note="Seminal vesicle autoantigen (SVA); pfam05326"
                     /db_xref="CDD:398804"
     Region          1003..1301
                     /region_name="A2M_2"
                     /note="Proteins similar to alpha2-macroglobulin (alpha
                     (2)-M). This group also contains the pregnancy zone
                     protein (PZP). Alpha(2)-M and PZP are broadly specific
                     proteinase inhibitors. Alpha (2)-M is a major carrier
                     protein in serum. The structural thioester...; cd02897"
                     /db_xref="CDD:239227"
     Site            order(1017,1019..1020,1023,1063,1073,1076,1128,1130..1131,
                     1285)
                     /site_type="other"
                     /note="surface patch"
                     /db_xref="CDD:239227"
     Site            1017..1020
                     /site_type="active"
                     /note="thioester region [active]"
                     /db_xref="CDD:239227"
     Site            order(1117,1121,1123,1131)
                     /site_type="other"
                     /note="specificity defining residues"
                     /db_xref="CDD:239227"
     Region          1407..1496
                     /region_name="A2M_recep"
                     /note="A-macroglobulin receptor binding domain; pfam07677"
                     /db_xref="CDD:462226"
     CDS             1..1500
                     /gene="LOC128852443"
                     /coded_by="XM_054069201.1:80..4582"
                     /db_xref="GeneID:128852443"
ORIGIN      
        1 mergkketnr srgrgedkge iqlsaegfsl qsdmwsivfl wgsilllpsv agspamlnya
       61 vaipsqlyhp fsetvclqls rkqavpihvt vtlqsragne tlitqsisql tffqctsfqv
      121 pppagnpdev afivitvlea dsefqkkqev likhadkktf iqtdkpmyrp gqtvkwrivt
      181 ldqnfvasnk mhrlvelkdp kgnriaqwln vtpmggivdv sfslaeealv geyiikipdt
      241 thtfrveeyv lpkfsvsiqm pqvvtileen frlnicgmyt ygkpvqgnvk avvcrkniry
      301 nrksskakrs ickdytgetn kdgcfstevn ikfyhqkrad nydfnleava flkesgtgve
      361 lnttenckvt fgittlqfwg tsyyyqqgap yygnlelksa ngthlknkev iltvsygsrk
      421 qtktyftddt gmasftldts awdnsskvll qaktqpddlr grnmrvsygs asltlkafys
      481 sshssvriqp vqamlpcgdm qhvtvhyhil atelgngaar adfyhlvlar gslvhngqta
      541 illdptlgqy sgafnitlpv dlispmatlf vytafpegqv aadtfslkvs kcfrnnvklg
      601 fsdtvalpgs avrlhlqaap gslcsiravd qnvvllrpea elsrdsvynm fsysqghptt
      661 lidpysdyct thkspgtngs pqttlppgtm spfthnrysy avsqpdvyel lknsgltflt
      721 slkikspiec htqttfyydy msydeqtdvd nldletdavd ehsesehvel dgeegpvrtw
      781 fpetfiwtlv pinasgsael avtvpdsitd wkamtfctse shglgisett slrsfkpffv
      841 eptmpyavfr gesfplkvkv fsyleqcmtl qlslmdskdf efvhanvrfs tclcpdsakt
      901 ffwvvkatkl gkvnftvtae vmeqedvcte rtavmpesgg kdtvvklllv kaeglleekt
      961 htsllcpkgt sasetitfpl penrvlgser ahisflgdil gtalenidel lqmssgcgeq
     1021 nmvhfapnvf iiryleetgq ltpeikqkai gylesgyqrq llykhtdgsy safgegtvpg
     1081 ntwltalvlk tfsqaqdfih idkqnikdaa saliktqtps gcfksvgklf nnglmgavee
     1141 glgltsviit alihsgmpps dpvvwkslkc irdlvnadtg ssnlyslala anafaaagdk
     1201 tlrqnilkrl dkaaiisdgq ifwsqqprqe edslrwyrap svdveltsti lmahlskssl
     1261 ssdeirkasq ivswlikqqn pyggfastqd tvvalealal yatktfskdv ldlqaylsse
     1321 gfnqkiqvdn tnrlllqtve lpatpqvytv rvqghgcifl qailryhisp lrsdvafsvs
     1381 vqtecmapsa tqfpvtvhar ytgnrvstnm vliqvellsg yspvtgslee lkkmplvkkv
     1441 eseadriily leelprqpht ytllvqqdmq vtdrkpatik iydyympeet tvmsysapce
//
LOCUS       XP_053925178            1469 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-2-macroglobulin-like protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053925178
VERSION     XP_053925178.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069203.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1469
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1469
                     /product="alpha-2-macroglobulin-like protein 1 isoform X2"
                     /calculated_mol_wt=162906
     Region          142..215
                     /region_name="MG2"
                     /note="MG2 domain; pfam01835"
                     /db_xref="CDD:426464"
     Region          217..302
                     /region_name="MG3"
                     /note="Macroglobulin domain MG3; pfam17791"
                     /db_xref="CDD:465509"
     Region          345..432
                     /region_name="MG4"
                     /note="Macroglobulin domain MG4; pfam17789"
                     /db_xref="CDD:465507"
     Region          455..605
                     /region_name="A2M_BRD"
                     /note="Alpha-2-macroglobulin bait region domain;
                     pfam07703"
                     /db_xref="CDD:462235"
     Region          753..843
                     /region_name="A2M"
                     /note="Alpha-2-macroglobulin family; pfam00207"
                     /db_xref="CDD:459711"
     Region          <805..897
                     /region_name="SVA"
                     /note="Seminal vesicle autoantigen (SVA); pfam05326"
                     /db_xref="CDD:398804"
     Region          972..1270
                     /region_name="A2M_2"
                     /note="Proteins similar to alpha2-macroglobulin (alpha
                     (2)-M). This group also contains the pregnancy zone
                     protein (PZP). Alpha(2)-M and PZP are broadly specific
                     proteinase inhibitors. Alpha (2)-M is a major carrier
                     protein in serum. The structural thioester...; cd02897"
                     /db_xref="CDD:239227"
     Site            order(986,988..989,992,1032,1042,1045,1097,1099..1100,
                     1254)
                     /site_type="other"
                     /note="surface patch"
                     /db_xref="CDD:239227"
     Site            986..989
                     /site_type="active"
                     /note="thioester region [active]"
                     /db_xref="CDD:239227"
     Site            order(1086,1090,1092,1100)
                     /site_type="other"
                     /note="specificity defining residues"
                     /db_xref="CDD:239227"
     Region          1376..1465
                     /region_name="A2M_recep"
                     /note="A-macroglobulin receptor binding domain; pfam07677"
                     /db_xref="CDD:462226"
     CDS             1..1469
                     /gene="LOC128852443"
                     /coded_by="XM_054069203.1:80..4489"
                     /db_xref="GeneID:128852443"
ORIGIN      
        1 mergkketnr srgrgedkge iqlsaegfsl qsdmwsivfl wgsilllpsv agspamlnya
       61 vaipsqlyhp fsetvclqls rkqavpihvt vtlqsragne tlitqsisql tffqctsfqt
      121 psdedrgpag pittlaqlrs pqvkwrivtl dqnfvasnkm hrlvelkdpk gnriaqwlnv
      181 tpmggivdvs fslaeealvg eyiikipdtt htfrveeyvl pkfsvsiqmp qvvtileenf
      241 rlnicgmyty gkpvqgnvka vvcrkniryn rksskakrsi ckdytgetnk dgcfstevni
      301 kfyhqkradn ydfnleavaf lkesgtgvel nttenckvtf gittlqfwgt syyyqqgapy
      361 ygnlelksan gthlknkevi ltvsygsrkq tktyftddtg masftldtsa wdnsskvllq
      421 aktqpddlrg rnmrvsygsa sltlkafyss shssvriqpv qamlpcgdmq hvtvhyhila
      481 telgngaara dfyhlvlarg slvhngqtai lldptlgqys gafnitlpvd lispmatlfv
      541 ytafpegqva adtfslkvsk cfrnnvklgf sdtvalpgsa vrlhlqaapg slcsiravdq
      601 nvvllrpeae lsrdsvynmf sysqghpttl idpysdyctt hkspgtngsp qttlppgtms
      661 pfthnrysya vsqpdvyell knsgltflts lkikspiech tqttfyydym sydeqtdvdn
      721 ldletdavde hsesehveld geegpvrtwf petfiwtlvp inasgsaela vtvpdsitdw
      781 kamtfctses hglgisetts lrsfkpffve ptmpyavfrg esfplkvkvf syleqcmtlq
      841 lslmdskdfe fvhanvrfst clcpdsaktf fwvvkatklg kvnftvtaev meqedvcter
      901 tavmpesggk dtvvklllvk aeglleekth tsllcpkgts asetitfplp enrvlgsera
      961 hisflgdilg talenidell qmssgcgeqn mvhfapnvfi iryleetgql tpeikqkaig
     1021 ylesgyqrql lykhtdgsys afgegtvpgn twltalvlkt fsqaqdfihi dkqnikdaas
     1081 aliktqtpsg cfksvgklfn nglmgaveeg lgltsviita lihsgmppsd pvvwkslkci
     1141 rdlvnadtgs snlyslalaa nafaaagdkt lrqnilkrld kaaiisdgqi fwsqqprqee
     1201 dslrwyraps vdveltstil mahlskssls sdeirkasqi vswlikqqnp yggfastqdt
     1261 vvalealaly atktfskdvl dlqaylsseg fnqkiqvdnt nrlllqtvel patpqvytvr
     1321 vqghgciflq ailryhispl rsdvafsvsv qtecmapsat qfpvtvhary tgnrvstnmv
     1381 liqvellsgy spvtgsleel kkmplvkkve seadriilyl eelprqphty tllvqqdmqv
     1441 tdrkpatiki ydyympeett vmsysapce
//
LOCUS       XP_053925185            1370 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-2-macroglobulin-like protein 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053925185
VERSION     XP_053925185.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069210.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1370
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1370
                     /product="alpha-2-macroglobulin-like protein 1 isoform X3"
                     /calculated_mol_wt=152147
     Region          43..116
                     /region_name="MG2"
                     /note="MG2 domain; pfam01835"
                     /db_xref="CDD:426464"
     Region          118..203
                     /region_name="MG3"
                     /note="Macroglobulin domain MG3; pfam17791"
                     /db_xref="CDD:465509"
     Region          246..333
                     /region_name="MG4"
                     /note="Macroglobulin domain MG4; pfam17789"
                     /db_xref="CDD:465507"
     Region          356..506
                     /region_name="A2M_BRD"
                     /note="Alpha-2-macroglobulin bait region domain;
                     pfam07703"
                     /db_xref="CDD:462235"
     Region          654..744
                     /region_name="A2M"
                     /note="Alpha-2-macroglobulin family; pfam00207"
                     /db_xref="CDD:459711"
     Region          <706..798
                     /region_name="SVA"
                     /note="Seminal vesicle autoantigen (SVA); pfam05326"
                     /db_xref="CDD:398804"
     Region          873..1171
                     /region_name="A2M_2"
                     /note="Proteins similar to alpha2-macroglobulin (alpha
                     (2)-M). This group also contains the pregnancy zone
                     protein (PZP). Alpha(2)-M and PZP are broadly specific
                     proteinase inhibitors. Alpha (2)-M is a major carrier
                     protein in serum. The structural thioester...; cd02897"
                     /db_xref="CDD:239227"
     Site            order(887,889..890,893,933,943,946,998,1000..1001,1155)
                     /site_type="other"
                     /note="surface patch"
                     /db_xref="CDD:239227"
     Site            887..890
                     /site_type="active"
                     /note="thioester region [active]"
                     /db_xref="CDD:239227"
     Site            order(987,991,993,1001)
                     /site_type="other"
                     /note="specificity defining residues"
                     /db_xref="CDD:239227"
     Region          1277..1366
                     /region_name="A2M_recep"
                     /note="A-macroglobulin receptor binding domain; pfam07677"
                     /db_xref="CDD:462226"
     CDS             1..1370
                     /gene="LOC128852443"
                     /coded_by="XM_054069210.1:244..4356"
                     /db_xref="GeneID:128852443"
ORIGIN      
        1 mqtrrllsrq tnlctdldrl tpsdedrgpa gpittlaqlr spqvkwrivt ldqnfvasnk
       61 mhrlvelkdp kgnriaqwln vtpmggivdv sfslaeealv geyiikipdt thtfrveeyv
      121 lpkfsvsiqm pqvvtileen frlnicgmyt ygkpvqgnvk avvcrkniry nrksskakrs
      181 ickdytgetn kdgcfstevn ikfyhqkrad nydfnleava flkesgtgve lnttenckvt
      241 fgittlqfwg tsyyyqqgap yygnlelksa ngthlknkev iltvsygsrk qtktyftddt
      301 gmasftldts awdnsskvll qaktqpddlr grnmrvsygs asltlkafys sshssvriqp
      361 vqamlpcgdm qhvtvhyhil atelgngaar adfyhlvlar gslvhngqta illdptlgqy
      421 sgafnitlpv dlispmatlf vytafpegqv aadtfslkvs kcfrnnvklg fsdtvalpgs
      481 avrlhlqaap gslcsiravd qnvvllrpea elsrdsvynm fsysqghptt lidpysdyct
      541 thkspgtngs pqttlppgtm spfthnrysy avsqpdvyel lknsgltflt slkikspiec
      601 htqttfyydy msydeqtdvd nldletdavd ehsesehvel dgeegpvrtw fpetfiwtlv
      661 pinasgsael avtvpdsitd wkamtfctse shglgisett slrsfkpffv eptmpyavfr
      721 gesfplkvkv fsyleqcmtl qlslmdskdf efvhanvrfs tclcpdsakt ffwvvkatkl
      781 gkvnftvtae vmeqedvcte rtavmpesgg kdtvvklllv kaeglleekt htsllcpkgt
      841 sasetitfpl penrvlgser ahisflgdil gtalenidel lqmssgcgeq nmvhfapnvf
      901 iiryleetgq ltpeikqkai gylesgyqrq llykhtdgsy safgegtvpg ntwltalvlk
      961 tfsqaqdfih idkqnikdaa saliktqtps gcfksvgklf nnglmgavee glgltsviit
     1021 alihsgmpps dpvvwkslkc irdlvnadtg ssnlyslala anafaaagdk tlrqnilkrl
     1081 dkaaiisdgq ifwsqqprqe edslrwyrap svdveltsti lmahlskssl ssdeirkasq
     1141 ivswlikqqn pyggfastqd tvvalealal yatktfskdv ldlqaylsse gfnqkiqvdn
     1201 tnrlllqtve lpatpqvytv rvqghgcifl qailryhisp lrsdvafsvs vqtecmapsa
     1261 tqfpvtvhar ytgnrvstnm vliqvellsg yspvtgslee lkkmplvkkv eseadriily
     1321 leelprqpht ytllvqqdmq vtdrkpatik iydyympeet tvmsysapce
//
LOCUS       XP_053925196            1332 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-2-macroglobulin-like protein 1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053925196
VERSION     XP_053925196.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069221.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1332
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1332
                     /product="alpha-2-macroglobulin-like protein 1 isoform X4"
                     /calculated_mol_wt=147893
     Region          6..78
                     /region_name="MG2"
                     /note="MG2 domain; pfam01835"
                     /db_xref="CDD:426464"
     Region          80..165
                     /region_name="MG3"
                     /note="Macroglobulin domain MG3; pfam17791"
                     /db_xref="CDD:465509"
     Region          208..295
                     /region_name="MG4"
                     /note="Macroglobulin domain MG4; pfam17789"
                     /db_xref="CDD:465507"
     Region          318..468
                     /region_name="A2M_BRD"
                     /note="Alpha-2-macroglobulin bait region domain;
                     pfam07703"
                     /db_xref="CDD:462235"
     Region          616..706
                     /region_name="A2M"
                     /note="Alpha-2-macroglobulin family; pfam00207"
                     /db_xref="CDD:459711"
     Region          <668..760
                     /region_name="SVA"
                     /note="Seminal vesicle autoantigen (SVA); pfam05326"
                     /db_xref="CDD:398804"
     Region          835..1133
                     /region_name="A2M_2"
                     /note="Proteins similar to alpha2-macroglobulin (alpha
                     (2)-M). This group also contains the pregnancy zone
                     protein (PZP). Alpha(2)-M and PZP are broadly specific
                     proteinase inhibitors. Alpha (2)-M is a major carrier
                     protein in serum. The structural thioester...; cd02897"
                     /db_xref="CDD:239227"
     Site            order(849,851..852,855,895,905,908,960,962..963,1117)
                     /site_type="other"
                     /note="surface patch"
                     /db_xref="CDD:239227"
     Site            849..852
                     /site_type="active"
                     /note="thioester region [active]"
                     /db_xref="CDD:239227"
     Site            order(949,953,955,963)
                     /site_type="other"
                     /note="specificity defining residues"
                     /db_xref="CDD:239227"
     Region          1239..1328
                     /region_name="A2M_recep"
                     /note="A-macroglobulin receptor binding domain; pfam07677"
                     /db_xref="CDD:462226"
     CDS             1..1332
                     /gene="LOC128852443"
                     /coded_by="XM_054069221.1:191..4189"
                     /db_xref="GeneID:128852443"
ORIGIN      
        1 mtftavkwri vtldqnfvas nkmhrlvelk dpkgnriaqw lnvtpmggiv dvsfslaeea
       61 lvgeyiikip dtthtfrvee yvlpkfsvsi qmpqvvtile enfrlnicgm ytygkpvqgn
      121 vkavvcrkni rynrksskak rsickdytge tnkdgcfste vnikfyhqkr adnydfnlea
      181 vaflkesgtg velnttenck vtfgittlqf wgtsyyyqqg apyygnlelk sangthlknk
      241 eviltvsygs rkqtktyftd dtgmasftld tsawdnsskv llqaktqpdd lrgrnmrvsy
      301 gsasltlkaf yssshssvri qpvqamlpcg dmqhvtvhyh ilatelgnga aradfyhlvl
      361 argslvhngq tailldptlg qysgafnitl pvdlispmat lfvytafpeg qvaadtfslk
      421 vskcfrnnvk lgfsdtvalp gsavrlhlqa apgslcsira vdqnvvllrp eaelsrdsvy
      481 nmfsysqghp ttlidpysdy ctthkspgtn gspqttlppg tmspfthnry syavsqpdvy
      541 ellknsgltf ltslkikspi echtqttfyy dymsydeqtd vdnldletda vdehsesehv
      601 eldgeegpvr twfpetfiwt lvpinasgsa elavtvpdsi tdwkamtfct seshglgise
      661 ttslrsfkpf fveptmpyav frgesfplkv kvfsyleqcm tlqlslmdsk dfefvhanvr
      721 fstclcpdsa ktffwvvkat klgkvnftvt aevmeqedvc tertavmpes ggkdtvvkll
      781 lvkaegllee kthtsllcpk gtsasetitf plpenrvlgs erahisflgd ilgtalenid
      841 ellqmssgcg eqnmvhfapn vfiiryleet gqltpeikqk aigylesgyq rqllykhtdg
      901 sysafgegtv pgntwltalv lktfsqaqdf ihidkqnikd aasaliktqt psgcfksvgk
      961 lfnnglmgav eeglgltsvi italihsgmp psdpvvwksl kcirdlvnad tgssnlysla
     1021 laanafaaag dktlrqnilk rldkaaiisd gqifwsqqpr qeedslrwyr apsvdvelts
     1081 tilmahlsks slssdeirka sqivswlikq qnpyggfast qdtvvaleal alyatktfsk
     1141 dvldlqayls segfnqkiqv dntnrlllqt velpatpqvy tvrvqghgci flqailryhi
     1201 splrsdvafs vsvqtecmap satqfpvtvh arytgnrvst nmvliqvell sgyspvtgsl
     1261 eelkkmplvk kveseadrii lyleelprqp htytllvqqd mqvtdrkpat ikiydyympe
     1321 ettvmsysap ce
//
LOCUS       XP_053925206            1332 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-2-macroglobulin-like protein 1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053925206
VERSION     XP_053925206.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069231.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1332
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1332
                     /product="alpha-2-macroglobulin-like protein 1 isoform X4"
                     /calculated_mol_wt=147893
     Region          6..78
                     /region_name="MG2"
                     /note="MG2 domain; pfam01835"
                     /db_xref="CDD:426464"
     Region          80..165
                     /region_name="MG3"
                     /note="Macroglobulin domain MG3; pfam17791"
                     /db_xref="CDD:465509"
     Region          208..295
                     /region_name="MG4"
                     /note="Macroglobulin domain MG4; pfam17789"
                     /db_xref="CDD:465507"
     Region          318..468
                     /region_name="A2M_BRD"
                     /note="Alpha-2-macroglobulin bait region domain;
                     pfam07703"
                     /db_xref="CDD:462235"
     Region          616..706
                     /region_name="A2M"
                     /note="Alpha-2-macroglobulin family; pfam00207"
                     /db_xref="CDD:459711"
     Region          <668..760
                     /region_name="SVA"
                     /note="Seminal vesicle autoantigen (SVA); pfam05326"
                     /db_xref="CDD:398804"
     Region          835..1133
                     /region_name="A2M_2"
                     /note="Proteins similar to alpha2-macroglobulin (alpha
                     (2)-M). This group also contains the pregnancy zone
                     protein (PZP). Alpha(2)-M and PZP are broadly specific
                     proteinase inhibitors. Alpha (2)-M is a major carrier
                     protein in serum. The structural thioester...; cd02897"
                     /db_xref="CDD:239227"
     Site            order(849,851..852,855,895,905,908,960,962..963,1117)
                     /site_type="other"
                     /note="surface patch"
                     /db_xref="CDD:239227"
     Site            849..852
                     /site_type="active"
                     /note="thioester region [active]"
                     /db_xref="CDD:239227"
     Site            order(949,953,955,963)
                     /site_type="other"
                     /note="specificity defining residues"
                     /db_xref="CDD:239227"
     Region          1239..1328
                     /region_name="A2M_recep"
                     /note="A-macroglobulin receptor binding domain; pfam07677"
                     /db_xref="CDD:462226"
     CDS             1..1332
                     /gene="LOC128852443"
                     /coded_by="XM_054069231.1:172..4170"
                     /db_xref="GeneID:128852443"
ORIGIN      
        1 mtftavkwri vtldqnfvas nkmhrlvelk dpkgnriaqw lnvtpmggiv dvsfslaeea
       61 lvgeyiikip dtthtfrvee yvlpkfsvsi qmpqvvtile enfrlnicgm ytygkpvqgn
      121 vkavvcrkni rynrksskak rsickdytge tnkdgcfste vnikfyhqkr adnydfnlea
      181 vaflkesgtg velnttenck vtfgittlqf wgtsyyyqqg apyygnlelk sangthlknk
      241 eviltvsygs rkqtktyftd dtgmasftld tsawdnsskv llqaktqpdd lrgrnmrvsy
      301 gsasltlkaf yssshssvri qpvqamlpcg dmqhvtvhyh ilatelgnga aradfyhlvl
      361 argslvhngq tailldptlg qysgafnitl pvdlispmat lfvytafpeg qvaadtfslk
      421 vskcfrnnvk lgfsdtvalp gsavrlhlqa apgslcsira vdqnvvllrp eaelsrdsvy
      481 nmfsysqghp ttlidpysdy ctthkspgtn gspqttlppg tmspfthnry syavsqpdvy
      541 ellknsgltf ltslkikspi echtqttfyy dymsydeqtd vdnldletda vdehsesehv
      601 eldgeegpvr twfpetfiwt lvpinasgsa elavtvpdsi tdwkamtfct seshglgise
      661 ttslrsfkpf fveptmpyav frgesfplkv kvfsyleqcm tlqlslmdsk dfefvhanvr
      721 fstclcpdsa ktffwvvkat klgkvnftvt aevmeqedvc tertavmpes ggkdtvvkll
      781 lvkaegllee kthtsllcpk gtsasetitf plpenrvlgs erahisflgd ilgtalenid
      841 ellqmssgcg eqnmvhfapn vfiiryleet gqltpeikqk aigylesgyq rqllykhtdg
      901 sysafgegtv pgntwltalv lktfsqaqdf ihidkqnikd aasaliktqt psgcfksvgk
      961 lfnnglmgav eeglgltsvi italihsgmp psdpvvwksl kcirdlvnad tgssnlysla
     1021 laanafaaag dktlrqnilk rldkaaiisd gqifwsqqpr qeedslrwyr apsvdvelts
     1081 tilmahlsks slssdeirka sqivswlikq qnpyggfast qdtvvaleal alyatktfsk
     1141 dvldlqayls segfnqkiqv dntnrlllqt velpatpqvy tvrvqghgci flqailryhi
     1201 splrsdvafs vsvqtecmap satqfpvtvh arytgnrvst nmvliqvell sgyspvtgsl
     1261 eelkkmplvk kveseadrii lyleelprqp htytllvqqd mqvtdrkpat ikiydyympe
     1321 ettvmsysap ce
//
LOCUS       XP_053925214            1332 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-2-macroglobulin-like protein 1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053925214
VERSION     XP_053925214.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069239.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1332
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1332
                     /product="alpha-2-macroglobulin-like protein 1 isoform X4"
                     /calculated_mol_wt=147893
     Region          6..78
                     /region_name="MG2"
                     /note="MG2 domain; pfam01835"
                     /db_xref="CDD:426464"
     Region          80..165
                     /region_name="MG3"
                     /note="Macroglobulin domain MG3; pfam17791"
                     /db_xref="CDD:465509"
     Region          208..295
                     /region_name="MG4"
                     /note="Macroglobulin domain MG4; pfam17789"
                     /db_xref="CDD:465507"
     Region          318..468
                     /region_name="A2M_BRD"
                     /note="Alpha-2-macroglobulin bait region domain;
                     pfam07703"
                     /db_xref="CDD:462235"
     Region          616..706
                     /region_name="A2M"
                     /note="Alpha-2-macroglobulin family; pfam00207"
                     /db_xref="CDD:459711"
     Region          <668..760
                     /region_name="SVA"
                     /note="Seminal vesicle autoantigen (SVA); pfam05326"
                     /db_xref="CDD:398804"
     Region          835..1133
                     /region_name="A2M_2"
                     /note="Proteins similar to alpha2-macroglobulin (alpha
                     (2)-M). This group also contains the pregnancy zone
                     protein (PZP). Alpha(2)-M and PZP are broadly specific
                     proteinase inhibitors. Alpha (2)-M is a major carrier
                     protein in serum. The structural thioester...; cd02897"
                     /db_xref="CDD:239227"
     Site            order(849,851..852,855,895,905,908,960,962..963,1117)
                     /site_type="other"
                     /note="surface patch"
                     /db_xref="CDD:239227"
     Site            849..852
                     /site_type="active"
                     /note="thioester region [active]"
                     /db_xref="CDD:239227"
     Site            order(949,953,955,963)
                     /site_type="other"
                     /note="specificity defining residues"
                     /db_xref="CDD:239227"
     Region          1239..1328
                     /region_name="A2M_recep"
                     /note="A-macroglobulin receptor binding domain; pfam07677"
                     /db_xref="CDD:462226"
     CDS             1..1332
                     /gene="LOC128852443"
                     /coded_by="XM_054069239.1:129..4127"
                     /db_xref="GeneID:128852443"
ORIGIN      
        1 mtftavkwri vtldqnfvas nkmhrlvelk dpkgnriaqw lnvtpmggiv dvsfslaeea
       61 lvgeyiikip dtthtfrvee yvlpkfsvsi qmpqvvtile enfrlnicgm ytygkpvqgn
      121 vkavvcrkni rynrksskak rsickdytge tnkdgcfste vnikfyhqkr adnydfnlea
      181 vaflkesgtg velnttenck vtfgittlqf wgtsyyyqqg apyygnlelk sangthlknk
      241 eviltvsygs rkqtktyftd dtgmasftld tsawdnsskv llqaktqpdd lrgrnmrvsy
      301 gsasltlkaf yssshssvri qpvqamlpcg dmqhvtvhyh ilatelgnga aradfyhlvl
      361 argslvhngq tailldptlg qysgafnitl pvdlispmat lfvytafpeg qvaadtfslk
      421 vskcfrnnvk lgfsdtvalp gsavrlhlqa apgslcsira vdqnvvllrp eaelsrdsvy
      481 nmfsysqghp ttlidpysdy ctthkspgtn gspqttlppg tmspfthnry syavsqpdvy
      541 ellknsgltf ltslkikspi echtqttfyy dymsydeqtd vdnldletda vdehsesehv
      601 eldgeegpvr twfpetfiwt lvpinasgsa elavtvpdsi tdwkamtfct seshglgise
      661 ttslrsfkpf fveptmpyav frgesfplkv kvfsyleqcm tlqlslmdsk dfefvhanvr
      721 fstclcpdsa ktffwvvkat klgkvnftvt aevmeqedvc tertavmpes ggkdtvvkll
      781 lvkaegllee kthtsllcpk gtsasetitf plpenrvlgs erahisflgd ilgtalenid
      841 ellqmssgcg eqnmvhfapn vfiiryleet gqltpeikqk aigylesgyq rqllykhtdg
      901 sysafgegtv pgntwltalv lktfsqaqdf ihidkqnikd aasaliktqt psgcfksvgk
      961 lfnnglmgav eeglgltsvi italihsgmp psdpvvwksl kcirdlvnad tgssnlysla
     1021 laanafaaag dktlrqnilk rldkaaiisd gqifwsqqpr qeedslrwyr apsvdvelts
     1081 tilmahlsks slssdeirka sqivswlikq qnpyggfast qdtvvaleal alyatktfsk
     1141 dvldlqayls segfnqkiqv dntnrlllqt velpatpqvy tvrvqghgci flqailryhi
     1201 splrsdvafs vsvqtecmap satqfpvtvh arytgnrvst nmvliqvell sgyspvtgsl
     1261 eelkkmplvk kveseadrii lyleelprqp htytllvqqd mqvtdrkpat ikiydyympe
     1321 ettvmsysap ce
//
LOCUS       XP_053925221            1310 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-2-macroglobulin-like protein 1 isoform X5 [Cuculus canorus].
ACCESSION   XP_053925221
VERSION     XP_053925221.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069246.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1310
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1310
                     /product="alpha-2-macroglobulin-like protein 1 isoform X5"
                     /calculated_mol_wt=145341
     Region          <5..56
                     /region_name="MG2"
                     /note="MG2 domain; pfam01835"
                     /db_xref="CDD:426464"
     Region          58..143
                     /region_name="MG3"
                     /note="Macroglobulin domain MG3; pfam17791"
                     /db_xref="CDD:465509"
     Region          186..273
                     /region_name="MG4"
                     /note="Macroglobulin domain MG4; pfam17789"
                     /db_xref="CDD:465507"
     Region          296..446
                     /region_name="A2M_BRD"
                     /note="Alpha-2-macroglobulin bait region domain;
                     pfam07703"
                     /db_xref="CDD:462235"
     Region          594..684
                     /region_name="A2M"
                     /note="Alpha-2-macroglobulin family; pfam00207"
                     /db_xref="CDD:459711"
     Region          <646..738
                     /region_name="SVA"
                     /note="Seminal vesicle autoantigen (SVA); pfam05326"
                     /db_xref="CDD:398804"
     Region          813..1111
                     /region_name="A2M_2"
                     /note="Proteins similar to alpha2-macroglobulin (alpha
                     (2)-M). This group also contains the pregnancy zone
                     protein (PZP). Alpha(2)-M and PZP are broadly specific
                     proteinase inhibitors. Alpha (2)-M is a major carrier
                     protein in serum. The structural thioester...; cd02897"
                     /db_xref="CDD:239227"
     Site            order(827,829..830,833,873,883,886,938,940..941,1095)
                     /site_type="other"
                     /note="surface patch"
                     /db_xref="CDD:239227"
     Site            827..830
                     /site_type="active"
                     /note="thioester region [active]"
                     /db_xref="CDD:239227"
     Site            order(927,931,933,941)
                     /site_type="other"
                     /note="specificity defining residues"
                     /db_xref="CDD:239227"
     Region          1217..1306
                     /region_name="A2M_recep"
                     /note="A-macroglobulin receptor binding domain; pfam07677"
                     /db_xref="CDD:462226"
     CDS             1..1310
                     /gene="LOC128852443"
                     /coded_by="XM_054069246.1:252..4184"
                     /db_xref="GeneID:128852443"
ORIGIN      
        1 mhrlvelkdp kgnriaqwln vtpmggivdv sfslaeealv geyiikipdt thtfrveeyv
       61 lpkfsvsiqm pqvvtileen frlnicgmyt ygkpvqgnvk avvcrkniry nrksskakrs
      121 ickdytgetn kdgcfstevn ikfyhqkrad nydfnleava flkesgtgve lnttenckvt
      181 fgittlqfwg tsyyyqqgap yygnlelksa ngthlknkev iltvsygsrk qtktyftddt
      241 gmasftldts awdnsskvll qaktqpddlr grnmrvsygs asltlkafys sshssvriqp
      301 vqamlpcgdm qhvtvhyhil atelgngaar adfyhlvlar gslvhngqta illdptlgqy
      361 sgafnitlpv dlispmatlf vytafpegqv aadtfslkvs kcfrnnvklg fsdtvalpgs
      421 avrlhlqaap gslcsiravd qnvvllrpea elsrdsvynm fsysqghptt lidpysdyct
      481 thkspgtngs pqttlppgtm spfthnrysy avsqpdvyel lknsgltflt slkikspiec
      541 htqttfyydy msydeqtdvd nldletdavd ehsesehvel dgeegpvrtw fpetfiwtlv
      601 pinasgsael avtvpdsitd wkamtfctse shglgisett slrsfkpffv eptmpyavfr
      661 gesfplkvkv fsyleqcmtl qlslmdskdf efvhanvrfs tclcpdsakt ffwvvkatkl
      721 gkvnftvtae vmeqedvcte rtavmpesgg kdtvvklllv kaeglleekt htsllcpkgt
      781 sasetitfpl penrvlgser ahisflgdil gtalenidel lqmssgcgeq nmvhfapnvf
      841 iiryleetgq ltpeikqkai gylesgyqrq llykhtdgsy safgegtvpg ntwltalvlk
      901 tfsqaqdfih idkqnikdaa saliktqtps gcfksvgklf nnglmgavee glgltsviit
      961 alihsgmpps dpvvwkslkc irdlvnadtg ssnlyslala anafaaagdk tlrqnilkrl
     1021 dkaaiisdgq ifwsqqprqe edslrwyrap svdveltsti lmahlskssl ssdeirkasq
     1081 ivswlikqqn pyggfastqd tvvalealal yatktfskdv ldlqaylsse gfnqkiqvdn
     1141 tnrlllqtve lpatpqvytv rvqghgcifl qailryhisp lrsdvafsvs vqtecmapsa
     1201 tqfpvtvhar ytgnrvstnm vliqvellsg yspvtgslee lkkmplvkkv eseadriily
     1261 leelprqpht ytllvqqdmq vtdrkpatik iydyympeet tvmsysapce
//
LOCUS       XP_009560763            1456 aa            linear   VRT 09-MAR-2023
DEFINITION  ovostatin [Cuculus canorus].
ACCESSION   XP_009560763
VERSION     XP_009560763.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009562468.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009560763.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1456
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1456
                     /product="ovostatin"
                     /calculated_mol_wt=164192
     Region          <92..1415
                     /region_name="YfaS"
                     /note="Uncharacterized conserved protein YfaS,
                     alpha-2-macroglobulin family [General function prediction
                     only]; COG2373"
                     /db_xref="CDD:441940"
     Region          951..1249
                     /region_name="A2M_2"
                     /note="Proteins similar to alpha2-macroglobulin (alpha
                     (2)-M). This group also contains the pregnancy zone
                     protein (PZP). Alpha(2)-M and PZP are broadly specific
                     proteinase inhibitors. Alpha (2)-M is a major carrier
                     protein in serum. The structural thioester...; cd02897"
                     /db_xref="CDD:239227"
     Site            order(965,967..968,971,1011,1021,1024,1076,1078..1079,
                     1233)
                     /site_type="other"
                     /note="surface patch"
                     /db_xref="CDD:239227"
     Site            965..968
                     /site_type="active"
                     /note="thioester region [active]"
                     /db_xref="CDD:239227"
     Site            order(1065,1069,1071,1079)
                     /site_type="other"
                     /note="specificity defining residues"
                     /db_xref="CDD:239227"
     CDS             1..1456
                     /gene="LOC104060656"
                     /coded_by="XM_009562468.2:95..4465"
                     /db_xref="GeneID:104060656"
ORIGIN      
        1 mwsrillsil slnwiatvss epqyvllvpt vvrsdspqta cvqlhglsep lslsiileyg
       61 iiqetlfees vtkneffkcy kfkvppaisd plafisfsak gttvnlserr svaiqnvant
      121 vfiqtdkpiy kpeqevlfrv valdsqfrpv qekyprivie dpegnkifqw ldvtsnhgiv
      181 qlsfrlisep ilgtyhiive kksgerehyf ftveeyvlpk fevttsvpnr isffdeevrv
      241 nicaiytygq pvqgnarinv cqqrfystqc eqkqkdtcea vtgplgkdgc fnsiisiktf
      301 qlyrsyarry tslkvesivt engtgiqmkd ddyiavnqen drvmlknmdf yykrgipyyg
      361 eisvtnmdde pvsnrtvlle lnekylanyt tdkngiaaff idtsdifdps fkltirqapd
      421 dcedlfiwrs dnepqasffv qrfysrtnsf vkiepvrekl scgqqqtikv hyilnregyg
      481 nhrhtnfyyv vmtkgkitlt gqkqvdisda akgtfsitlt vteklapstr lllytvhphg
      541 eivadsswih sdvcfknklq lefsekqglp gskvslhlea aansycalqa vdqsvyllqp
      601 ehelsakrvy yhlrmsdlyg yyyhglnled dkpqgctpvk ttffdglyye pvnvshdgda
      661 yrifrdmglk vftnsvlrkp vlcnedksqv dhypayfghg vtpvnsygte egriiggsgg
      721 sntirkffpe twiwdlvhtd skgevnvfyt ipdtitewkt safcmqddvg fgisspvslk
      781 afqpffvdlt mpysvirgek fnlvanafny lntciqvsai lakssdykae iispedntar
      841 lcanerktyi wavsphklgk vkftitaeak lntrttgnst speeemihrd tliqnllvep
      901 egikkeltqs svictkgtti sepvslslps nivqgsaray fsvigdilgt alrnmqnllh
      961 mpygcgeqnm alftpniyal dylnktgqlt eeirvkgtgy lstgyqkqls ykhrdgsyss
     1021 fgtrdkegsv wltafvyksf aqakryiyid dnvqsqtliw laskqksdgc fenagshfnn
     1081 alkggeegqy sltayivaal leaghsaahp viqsgmncle tafgngvhnl ynqalfayay
     1141 gladkeersq fflekldkta trdggsvhwq renkpsaehf pafyshapsa eiemtsyvll
     1201 allnkakltp edlsyisrvv rwlvrqqnpy ggfsssqdtv valqalaqyg yltfsrnsln
     1261 tvkanfmesp sktfqvndkn rfllqqaslp tipgnysvev ngtgcvylqt tlrynvhlpk
     1321 kvagfslsvg ptnascssnf ppkfdlvist sytgnhevsn maiidvkmls gfvpdrsslk
     1381 klqyqnsvvd rvdikndhvf fyiekasqke isfsfsveqs lpisdikpap vhmydyyetd
     1441 eyalaeyktp csppsn
//
LOCUS       XP_053925247            1444 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-2-macroglobulin-like protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053925247
VERSION     XP_053925247.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069272.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1444
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1444
                     /product="alpha-2-macroglobulin-like protein 1 isoform X1"
                     /calculated_mol_wt=160685
     Region          <122..1339
                     /region_name="YfaS"
                     /note="Uncharacterized conserved protein YfaS,
                     alpha-2-macroglobulin family [General function prediction
                     only]; COG2373"
                     /db_xref="CDD:441940"
     Region          946..1242
                     /region_name="A2M_2"
                     /note="Proteins similar to alpha2-macroglobulin (alpha
                     (2)-M). This group also contains the pregnancy zone
                     protein (PZP). Alpha(2)-M and PZP are broadly specific
                     proteinase inhibitors. Alpha (2)-M is a major carrier
                     protein in serum. The structural thioester...; cd02897"
                     /db_xref="CDD:239227"
     Site            order(960,962..963,966,1006,1016,1019,1071,1073..1074,
                     1226)
                     /site_type="other"
                     /note="surface patch"
                     /db_xref="CDD:239227"
     Site            960..963
                     /site_type="active"
                     /note="thioester region [active]"
                     /db_xref="CDD:239227"
     Site            order(1060,1064,1066,1074)
                     /site_type="other"
                     /note="specificity defining residues"
                     /db_xref="CDD:239227"
     Region          1350..1440
                     /region_name="A2M_recep"
                     /note="A-macroglobulin receptor binding domain; pfam07677"
                     /db_xref="CDD:462226"
     CDS             1..1444
                     /gene="LOC104060630"
                     /coded_by="XM_054069272.1:80..4414"
                     /db_xref="GeneID:104060630"
ORIGIN      
        1 mriaillsll fhmaaafhel yylvvipadl rfpstqaacl hitcykakiq vklilerstg
       61 hqllvqetmh kektfmcsnf wvgppadgte eiatvkliit gedvnieekk kvlirkassg
      121 tfiqtdkpiy qpgqtvkfrv vtldeefial ndsislflqd pknnrieqwl nvvpqdgiad
      181 lsfqlsdepv lgtyvinvtn akaygsfsve dyvlpkfevi fempnqiyal dktfplrvcg
      241 rytfgkgvqg minvslcqki apflpsaskp dlcleldnkt detgcfftnv slssfsrdfr
      301 yyqdsivvea slvengteih vkashkllis kiggmalfed vnsyyhtgem ykgkikvidy
      361 qgkalkhkkv llvvscgeqq fkqkyitgdc gktlfilntt acnstsasle asilsqyldk
      421 epgavdlsyq rashfirpfy stsrsflsiv ripemmpcgk tqaiqvdyri yqedlehgpk
      481 rvifsyfvtg krgivhahqk ivwvglpeml kgfffipltf sliygpsprl vvyvifpngk
      541 iiadsaifsi stcfrnkvel gfstsktlpd sevglhllaa pgstcavwav dqsillpklg
      601 kdlssniiya lfpslynsry phqvseddys cgpsdfdepd vfttfreigl kimsntnirk
      661 psacsttpst tilretvift srpmlmfaqp rraykterlt tatyqptmfs pvssaedkah
      721 kyfpktwiwd lysigssgnk nvtvtvpnti aewkagmfci ghngfglapt ssllvykpfl
      781 vevtlpssvi qgetfilkat vfnylqqcmk iqvnleefah lqlkpcedcv yssclcakea
      841 kafqwsvtae qlglmnitls aeavateelc gaeipfvpkq gqkdmitkll lvrpegvlve
      901 kahssilcpk tgdlaqesvs lmlplnvveg svgatvsvtg dlmgtalqnl drlvqiphgc
      961 geqnmvlfap vvyvlqylek trqltaeiee ratgflrngy qiqlqyqhpd gsysefgtrd
     1021 eygntwltaf vvkcfvqakp yifldnrtiq aaltwleshq lpngcfrnvg qlfhtamkgg
     1081 vdgevllaay itaayleage tqqstavyka lgcitpslpk aastftqall aytfalakds
     1141 qrtqelldil dqkairaggq ihwsqtlsks rpstspwsqp lsvdveltsy vllallsksn
     1201 vtgsdlttas givawltrqq nayggfastq dtvvalqala kyaaltystk gaaevtvrsq
     1261 rgfgrdfqvs yqnrllvqea altevpgkff lqaqgsccvf trmvlryntp spqvsttfal
     1321 rvttepvnct eddihsvtvy invrytgkrs tskmvivevs llsgfvlapg yemsmqqwhp
     1381 vkrtektqgg vaiyldklsh esetyilhle reidvtnlkp ghvrvydyyh peeqaladyn
     1441 vfci
//
LOCUS       XP_053925257            1443 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-2-macroglobulin-like protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053925257
VERSION     XP_053925257.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069282.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1443
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1443
                     /product="alpha-2-macroglobulin-like protein 1 isoform X2"
                     /calculated_mol_wt=160583
     Region          <122..1338
                     /region_name="YfaS"
                     /note="Uncharacterized conserved protein YfaS,
                     alpha-2-macroglobulin family [General function prediction
                     only]; COG2373"
                     /db_xref="CDD:441940"
     Region          945..1241
                     /region_name="A2M_2"
                     /note="Proteins similar to alpha2-macroglobulin (alpha
                     (2)-M). This group also contains the pregnancy zone
                     protein (PZP). Alpha(2)-M and PZP are broadly specific
                     proteinase inhibitors. Alpha (2)-M is a major carrier
                     protein in serum. The structural thioester...; cd02897"
                     /db_xref="CDD:239227"
     Site            order(959,961..962,965,1005,1015,1018,1070,1072..1073,
                     1225)
                     /site_type="other"
                     /note="surface patch"
                     /db_xref="CDD:239227"
     Site            959..962
                     /site_type="active"
                     /note="thioester region [active]"
                     /db_xref="CDD:239227"
     Site            order(1059,1063,1065,1073)
                     /site_type="other"
                     /note="specificity defining residues"
                     /db_xref="CDD:239227"
     Region          1349..1439
                     /region_name="A2M_recep"
                     /note="A-macroglobulin receptor binding domain; pfam07677"
                     /db_xref="CDD:462226"
     CDS             1..1443
                     /gene="LOC104060630"
                     /coded_by="XM_054069282.1:80..4411"
                     /db_xref="GeneID:104060630"
ORIGIN      
        1 mriaillsll fhmaaafhel yylvvipadl rfpstqaacl hitcykakiq vklilerstg
       61 hqllvqetmh kektfmcsnf wvgppadgte eiatvkliit gedvnieekk kvlirkassg
      121 tfiqtdkpiy qpgqtvkfrv vtldeefial ndsislflqd pknnrieqwl nvvpqdgiad
      181 lsfqlsdepv lgtyvinvtn akaygsfsve dyvlpkfevi fempnqiyal dktfplrvcg
      241 rytfgkgvqg minvslcqki apflpsaskp dlcleldnkt detgcfftnv slssfsrdfr
      301 yyqdsivvea slvengteih vkashkllis kiggmalfed vnsyyhtgem ykgkikvidy
      361 qgkalkhkkv llvvscgeqq fkqkyitgdc gktlfilntt acnstsasle asilsqyldk
      421 epgavdlsyq rashfirpfy stsrsflsiv ripemmpcgk tqaiqvdyri yqedlehgpk
      481 rvifsyfvtg krgivhahqk ivwvglpeml kgfffipltf sliygpsprl vvyvifpngk
      541 iiadsaifsi stcfrnkvel gfstsktlpd sevglhllaa pgstcavwav dqsillpklg
      601 kdlssniiya lfpslynsry phqvseddys cgpsdfdepd vfttfreigl kimsntnirk
      661 psacsttpst tilretvift srpmlmfaqp rraykkrltt atyqptmfsp vssaedkahk
      721 yfpktwiwdl ysigssgnkn vtvtvpntia ewkagmfcig hngfglapts sllvykpflv
      781 evtlpssviq getfilkatv fnylqqcmki qvnleefahl qlkpcedcvy ssclcakeak
      841 afqwsvtaeq lglmnitlsa eavateelcg aeipfvpkqg qkdmitklll vrpegvlvek
      901 ahssilcpkt gdlaqesvsl mlplnvvegs vgatvsvtgd lmgtalqnld rlvqiphgcg
      961 eqnmvlfapv vyvlqylekt rqltaeieer atgflrngyq iqlqyqhpdg sysefgtrde
     1021 ygntwltafv vkcfvqakpy ifldnrtiqa altwleshql pngcfrnvgq lfhtamkggv
     1081 dgevllaayi taayleaget qqstavykal gcitpslpka astftqalla ytfalakdsq
     1141 rtqelldild qkairaggqi hwsqtlsksr pstspwsqpl svdveltsyv llallsksnv
     1201 tgsdlttasg ivawltrqqn ayggfastqd tvvalqalak yaaltystkg aaevtvrsqr
     1261 gfgrdfqvsy qnrllvqeaa ltevpgkffl qaqgsccvft rmvlryntps pqvsttfalr
     1321 vttepvncte ddihsvtvyi nvrytgkrst skmvivevsl lsgfvlapgy emsmqqwhpv
     1381 krtektqggv aiyldklshe setyilhler eidvtnlkpg hvrvydyyhp eeqaladynv
     1441 fci
//
LOCUS       XP_053925260            1431 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-2-macroglobulin-like protein 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053925260
VERSION     XP_053925260.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069285.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1431
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1431
                     /product="alpha-2-macroglobulin-like protein 1 isoform X3"
                     /calculated_mol_wt=159180
     Region          <109..1326
                     /region_name="YfaS"
                     /note="Uncharacterized conserved protein YfaS,
                     alpha-2-macroglobulin family [General function prediction
                     only]; COG2373"
                     /db_xref="CDD:441940"
     Region          933..1229
                     /region_name="A2M_2"
                     /note="Proteins similar to alpha2-macroglobulin (alpha
                     (2)-M). This group also contains the pregnancy zone
                     protein (PZP). Alpha(2)-M and PZP are broadly specific
                     proteinase inhibitors. Alpha (2)-M is a major carrier
                     protein in serum. The structural thioester...; cd02897"
                     /db_xref="CDD:239227"
     Site            order(947,949..950,953,993,1003,1006,1058,1060..1061,1213)
                     /site_type="other"
                     /note="surface patch"
                     /db_xref="CDD:239227"
     Site            947..950
                     /site_type="active"
                     /note="thioester region [active]"
                     /db_xref="CDD:239227"
     Site            order(1047,1051,1053,1061)
                     /site_type="other"
                     /note="specificity defining residues"
                     /db_xref="CDD:239227"
     Region          1337..1427
                     /region_name="A2M_recep"
                     /note="A-macroglobulin receptor binding domain; pfam07677"
                     /db_xref="CDD:462226"
     CDS             1..1431
                     /gene="LOC104060630"
                     /coded_by="XM_054069285.1:61..4356"
                     /db_xref="GeneID:104060630"
ORIGIN      
        1 mlfiggryyl vvipadlrfp stqaaclhit cykakiqvkl ilerstghql lvqetmhkek
       61 tfmcsnfwvg ppadgteeia tvkliitged vnieekkkvl irkassgtfi qtdkpiyqpg
      121 qtvkfrvvtl deefialnds islflqdpkn nrieqwlnvv pqdgiadlsf qlsdepvlgt
      181 yvinvtnaka ygsfsvedyv lpkfevifem pnqiyaldkt fplrvcgryt fgkgvqgmin
      241 vslcqkiapf lpsaskpdlc leldnktdet gcfftnvsls sfsrdfryyq dsivveaslv
      301 engteihvka shklliskig gmalfedvns yyhtgemykg kikvidyqgk alkhkkvllv
      361 vscgeqqfkq kyitgdcgkt lfilnttacn stsasleasi lsqyldkepg avdlsyqras
      421 hfirpfysts rsflsivrip emmpcgktqa iqvdyriyqe dlehgpkrvi fsyfvtgkrg
      481 ivhahqkivw vglpemlkgf ffipltfsli ygpsprlvvy vifpngkiia dsaifsistc
      541 frnkvelgfs tsktlpdsev glhllaapgs tcavwavdqs illpklgkdl ssniiyalfp
      601 slynsryphq vseddyscgp sdfdepdvft tfreiglkim sntnirkpsa csttpsttil
      661 retviftsrp mlmfaqprra ykterlttat yqptmfspvs saedkahkyf pktwiwdlys
      721 igssgnknvt vtvpntiaew kagmfcighn gfglaptssl lvykpflvev tlpssviqge
      781 tfilkatvfn ylqqcmkiqv nleefahlql kpcedcvyss clcakeakaf qwsvtaeqlg
      841 lmnitlsaea vateelcgae ipfvpkqgqk dmitklllvr pegvlvekah ssilcpktgd
      901 laqesvslml plnvvegsvg atvsvtgdlm gtalqnldrl vqiphgcgeq nmvlfapvvy
      961 vlqylektrq ltaeieerat gflrngyqiq lqyqhpdgsy sefgtrdeyg ntwltafvvk
     1021 cfvqakpyif ldnrtiqaal twleshqlpn gcfrnvgqlf htamkggvdg evllaayita
     1081 ayleagetqq stavykalgc itpslpkaas tftqallayt falakdsqrt qelldildqk
     1141 airaggqihw sqtlsksrps tspwsqplsv dveltsyvll allsksnvtg sdlttasgiv
     1201 awltrqqnay ggfastqdtv valqalakya altystkgaa evtvrsqrgf grdfqvsyqn
     1261 rllvqeaalt evpgkfflqa qgsccvftrm vlryntpspq vsttfalrvt tepvnctedd
     1321 ihsvtvyinv rytgkrstsk mvivevslls gfvlapgyem smqqwhpvkr tektqggvai
     1381 yldklshese tyilhlerei dvtnlkpghv rvydyyhpee qaladynvfc i
//
LOCUS       XP_053925261            1194 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-2-macroglobulin-like protein 1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053925261
VERSION     XP_053925261.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069286.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1194
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1194
                     /product="alpha-2-macroglobulin-like protein 1 isoform X4"
                     /calculated_mol_wt=132433
     Region          88..>161
                     /region_name="MG4"
                     /note="Macroglobulin domain MG4; pfam17789"
                     /db_xref="CDD:465507"
     Region          197..346
                     /region_name="A2M_BRD"
                     /note="Alpha-2-macroglobulin bait region domain;
                     pfam07703"
                     /db_xref="CDD:462235"
     Region          <485..1089
                     /region_name="YfaS"
                     /note="Uncharacterized conserved protein YfaS,
                     alpha-2-macroglobulin family [General function prediction
                     only]; COG2373"
                     /db_xref="CDD:441940"
     Region          696..992
                     /region_name="A2M_2"
                     /note="Proteins similar to alpha2-macroglobulin (alpha
                     (2)-M). This group also contains the pregnancy zone
                     protein (PZP). Alpha(2)-M and PZP are broadly specific
                     proteinase inhibitors. Alpha (2)-M is a major carrier
                     protein in serum. The structural thioester...; cd02897"
                     /db_xref="CDD:239227"
     Site            order(710,712..713,716,756,766,769,821,823..824,976)
                     /site_type="other"
                     /note="surface patch"
                     /db_xref="CDD:239227"
     Site            710..713
                     /site_type="active"
                     /note="thioester region [active]"
                     /db_xref="CDD:239227"
     Site            order(810,814,816,824)
                     /site_type="other"
                     /note="specificity defining residues"
                     /db_xref="CDD:239227"
     Region          1100..1190
                     /region_name="A2M_recep"
                     /note="A-macroglobulin receptor binding domain; pfam07677"
                     /db_xref="CDD:462226"
     CDS             1..1194
                     /gene="LOC104060630"
                     /coded_by="XM_054069286.1:122..3706"
                     /db_xref="GeneID:104060630"
ORIGIN      
        1 minvslcqki apflpsaskp dlcleldnkt detgcfftnv slssfsrdfr yyqdsivvea
       61 slvengteih vkashkllis kiggmalfed vnsyyhtgem ykgkikvidy qgkalkhkkv
      121 llvvscgeqq fkqkyitgdc gktlfilntt acnstsasle asilsqyldk epgavdlsyq
      181 rashfirpfy stsrsflsiv ripemmpcgk tqaiqvdyri yqedlehgpk rvifsyfvtg
      241 krgivhahqk ivwvglpeml kgfffipltf sliygpsprl vvyvifpngk iiadsaifsi
      301 stcfrnkvel gfstsktlpd sevglhllaa pgstcavwav dqsillpklg kdlssniiya
      361 lfpslynsry phqvseddys cgpsdfdepd vfttfreigl kimsntnirk psacsttpst
      421 tilretvift srpmlmfaqp rraykterlt tatyqptmfs pvssaedkah kyfpktwiwd
      481 lysigssgnk nvtvtvpnti aewkagmfci ghngfglapt ssllvykpfl vevtlpssvi
      541 qgetfilkat vfnylqqcmk iqvnleefah lqlkpcedcv yssclcakea kafqwsvtae
      601 qlglmnitls aeavateelc gaeipfvpkq gqkdmitkll lvrpegvlve kahssilcpk
      661 tgdlaqesvs lmlplnvveg svgatvsvtg dlmgtalqnl drlvqiphgc geqnmvlfap
      721 vvyvlqylek trqltaeiee ratgflrngy qiqlqyqhpd gsysefgtrd eygntwltaf
      781 vvkcfvqakp yifldnrtiq aaltwleshq lpngcfrnvg qlfhtamkgg vdgevllaay
      841 itaayleage tqqstavyka lgcitpslpk aastftqall aytfalakds qrtqelldil
      901 dqkairaggq ihwsqtlsks rpstspwsqp lsvdveltsy vllallsksn vtgsdlttas
      961 givawltrqq nayggfastq dtvvalqala kyaaltystk gaaevtvrsq rgfgrdfqvs
     1021 yqnrllvqea altevpgkff lqaqgsccvf trmvlryntp spqvsttfal rvttepvnct
     1081 eddihsvtvy invrytgkrs tskmvivevs llsgfvlapg yemsmqqwhp vkrtektqgg
     1141 vaiyldklsh esetyilhle reidvtnlkp ghvrvydyyh peeqaladyn vfci
//
LOCUS       XP_009560754            1438 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-2-macroglobulin-like protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_009560754
VERSION     XP_009560754.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009562459.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009560754.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1438
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1438
                     /product="alpha-2-macroglobulin-like protein 1 isoform X1"
                     /calculated_mol_wt=161772
     Region          <137..1309
                     /region_name="YfaS"
                     /note="Uncharacterized conserved protein YfaS,
                     alpha-2-macroglobulin family [General function prediction
                     only]; COG2373"
                     /db_xref="CDD:441940"
     Region          954..1235
                     /region_name="A2M_2"
                     /note="Proteins similar to alpha2-macroglobulin (alpha
                     (2)-M). This group also contains the pregnancy zone
                     protein (PZP). Alpha(2)-M and PZP are broadly specific
                     proteinase inhibitors. Alpha (2)-M is a major carrier
                     protein in serum. The structural thioester...; cd02897"
                     /db_xref="CDD:239227"
     Site            order(968,970..971,974,1014,1024,1027,1079,1081..1082,
                     1219)
                     /site_type="other"
                     /note="surface patch"
                     /db_xref="CDD:239227"
     Site            968..971
                     /site_type="active"
                     /note="thioester region [active]"
                     /db_xref="CDD:239227"
     Site            order(1068,1072,1074,1082)
                     /site_type="other"
                     /note="specificity defining residues"
                     /db_xref="CDD:239227"
     Region          1342..1431
                     /region_name="A2M_recep"
                     /note="A-macroglobulin receptor binding domain; pfam07677"
                     /db_xref="CDD:462226"
     CDS             1..1438
                     /gene="LOC104060649"
                     /coded_by="XM_009562459.2:96..4412"
                     /db_xref="GeneID:104060649"
ORIGIN      
        1 mgapvlllal tlflvaaaas lepqytvvfp avihqsqeek lcihlsslte dvhlastlqv
       61 ttqnhtlvel dvekpgtfqc itfqvpeiih rkrdnstlqv ekvaflhvli hsgdnvlfeg
      121 rkkvlvkprk niilietdkn lykpgetvkf rivslddnlk vikneysqiw ledpeynria
      181 ewlnvksrng ivdlsfllas eaqlgeyais vqqnmarktf svdeyvlekf eikiehppfi
      241 taedeefhlk vcgkytygkp vqgkidvtfd tspiileyfs pgmrkqtswt nkngcanfmv
      301 ntealelqet dlyvlvraem mengtgaqtw ekaqlpiatr vksiefinlh lfykrglpyt
      361 gkvfchsgns slrnetvyli vdvndektql sfltdengea hfsldtsswn stmvslkgty
      421 ylendneqss seldtragyn iywlkpfyse snsfleikak ddvmpcdqeq evqvdyildq
      481 nklsseadhi dfyylviakg kilssgekqv piiqhenlqg sfsltltvgn dflpdinlll
      541 ftvfsdgevv admeefqiek cfrhkvaldf shkeevpgsk vsldlkaapg slcsvhavdk
      601 svllknnqtl taqtlhkavf dhsftiggrg fpyhledfea ypclpqqssl heksqmgapw
      661 yqsdadvfnv fkklrmkilt ntrikkpvsc vrpdfeikmy sgkhhvfeni vslgdsaprs
      721 dntkepkprt hfpetwiwdl isvgdegqas lqvvvpdtit ewnanafcva dtgfgfsslt
      781 tlrvfqpffv dlslpysviq getfilkatv fnylkdciqv hatltetpel kvdacpdcqf
      841 tsclcaneak tfmwnvtatr pgkvnvtvss vaedshdlcd nriavtllrg erdtvikpll
      901 vkpggvlhek tqnaflcaad ntvsdefflm lpaevlegsg ratfsvigdi mgpalqnsdr
      961 llqmpfgcge qnmvhfapni filqylnktk qldpeikdka leflrtgyqr qllykhddgs
     1021 ysafgkadnq gntwltafva rsfgqasshi yinkhhvhda lvwlkkqqlp sgcfqsvgkl
     1081 fnndlkggvd dtisltayit valvelhmek ndtmldnalh clknvtfdkt slyvkalmay
     1141 vftlikdmem reqlldmlek etaelltshs sseesssvie tvayillahv skpdltvsev
     1201 svsklvhwls gqrnafggfa stqdtvvslq alsqyaalip qdmrdvkvtv kdkeasplef
     1261 hvhknnklvl hqaslltvpg tytvqvtgsg cvyvqtalyy ntpppekeev flldvetvpr
     1321 ecdgvrkeld iqvsvsyvgd retsnmalve vemlsgflpm kssvkdieki llvkkteikp
     1381 dkltiyleel sknslklnis veqdievqnl kaatvhvydy ykpddrtare yvfpcnss
//
LOCUS       XP_053925279            1429 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-2-macroglobulin-like protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053925279
VERSION     XP_053925279.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069304.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1429
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1429
                     /product="alpha-2-macroglobulin-like protein 1 isoform X2"
                     /calculated_mol_wt=160601
     Region          <137..1309
                     /region_name="YfaS"
                     /note="Uncharacterized conserved protein YfaS,
                     alpha-2-macroglobulin family [General function prediction
                     only]; COG2373"
                     /db_xref="CDD:441940"
     Region          954..1235
                     /region_name="A2M_2"
                     /note="Proteins similar to alpha2-macroglobulin (alpha
                     (2)-M). This group also contains the pregnancy zone
                     protein (PZP). Alpha(2)-M and PZP are broadly specific
                     proteinase inhibitors. Alpha (2)-M is a major carrier
                     protein in serum. The structural thioester...; cd02897"
                     /db_xref="CDD:239227"
     Site            order(968,970..971,974,1014,1024,1027,1079,1081..1082,
                     1219)
                     /site_type="other"
                     /note="surface patch"
                     /db_xref="CDD:239227"
     Site            968..971
                     /site_type="active"
                     /note="thioester region [active]"
                     /db_xref="CDD:239227"
     Site            order(1068,1072,1074,1082)
                     /site_type="other"
                     /note="specificity defining residues"
                     /db_xref="CDD:239227"
     Region          1342..1425
                     /region_name="A2M_recep"
                     /note="A-macroglobulin receptor binding domain; pfam07677"
                     /db_xref="CDD:462226"
     CDS             1..1429
                     /gene="LOC104060649"
                     /coded_by="XM_054069304.1:97..4386"
                     /db_xref="GeneID:104060649"
ORIGIN      
        1 mgapvlllal tlflvaaaas lepqytvvfp avihqsqeek lcihlsslte dvhlastlqv
       61 ttqnhtlvel dvekpgtfqc itfqvpeiih rkrdnstlqv ekvaflhvli hsgdnvlfeg
      121 rkkvlvkprk niilietdkn lykpgetvkf rivslddnlk vikneysqiw ledpeynria
      181 ewlnvksrng ivdlsfllas eaqlgeyais vqqnmarktf svdeyvlekf eikiehppfi
      241 taedeefhlk vcgkytygkp vqgkidvtfd tspiileyfs pgmrkqtswt nkngcanfmv
      301 ntealelqet dlyvlvraem mengtgaqtw ekaqlpiatr vksiefinlh lfykrglpyt
      361 gkvfchsgns slrnetvyli vdvndektql sfltdengea hfsldtsswn stmvslkgty
      421 ylendneqss seldtragyn iywlkpfyse snsfleikak ddvmpcdqeq evqvdyildq
      481 nklsseadhi dfyylviakg kilssgekqv piiqhenlqg sfsltltvgn dflpdinlll
      541 ftvfsdgevv admeefqiek cfrhkvaldf shkeevpgsk vsldlkaapg slcsvhavdk
      601 svllknnqtl taqtlhkavf dhsftiggrg fpyhledfea ypclpqqssl heksqmgapw
      661 yqsdadvfnv fkklrmkilt ntrikkpvsc vrpdfeikmy sgkhhvfeni vslgdsaprs
      721 dntkepkprt hfpetwiwdl isvgdegqas lqvvvpdtit ewnanafcva dtgfgfsslt
      781 tlrvfqpffv dlslpysviq getfilkatv fnylkdciqv hatltetpel kvdacpdcqf
      841 tsclcaneak tfmwnvtatr pgkvnvtvss vaedshdlcd nriavtllrg erdtvikpll
      901 vkpggvlhek tqnaflcaad ntvsdefflm lpaevlegsg ratfsvigdi mgpalqnsdr
      961 llqmpfgcge qnmvhfapni filqylnktk qldpeikdka leflrtgyqr qllykhddgs
     1021 ysafgkadnq gntwltafva rsfgqasshi yinkhhvhda lvwlkkqqlp sgcfqsvgkl
     1081 fnndlkggvd dtisltayit valvelhmek ndtmldnalh clknvtfdkt slyvkalmay
     1141 vftlikdmem reqlldmlek etaelltshs sseesssvie tvayillahv skpdltvsev
     1201 svsklvhwls gqrnafggfa stqdtvvslq alsqyaalip qdmrdvkvtv kdkeasplef
     1261 hvhknnklvl hqaslltvpg tytvqvtgsg cvyvqtalyy ntpppekeev flldvetvpr
     1321 ecdgvrkeld iqvsvsyvgd retsnmalve vemlsgflpm kssvkdieki llvkkteikp
     1381 dkltiyleel sknslklnis veqdievqnl kaatvhvydy ykpgeisla
//
LOCUS       XP_009560737            1435 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-2-macroglobulin-like protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_009560737
VERSION     XP_009560737.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009562442.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009560737.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1435
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1435
                     /product="alpha-2-macroglobulin-like protein 1 isoform X1"
                     /calculated_mol_wt=160592
     Region          <128..1298
                     /region_name="YfaS"
                     /note="Uncharacterized conserved protein YfaS,
                     alpha-2-macroglobulin family [General function prediction
                     only]; COG2373"
                     /db_xref="CDD:441940"
     Region          938..1233
                     /region_name="A2M_2"
                     /note="Proteins similar to alpha2-macroglobulin (alpha
                     (2)-M). This group also contains the pregnancy zone
                     protein (PZP). Alpha(2)-M and PZP are broadly specific
                     proteinase inhibitors. Alpha (2)-M is a major carrier
                     protein in serum. The structural thioester...; cd02897"
                     /db_xref="CDD:239227"
     Site            order(952,954..955,958,998,1008,1011,1063,1065..1066,1217)
                     /site_type="other"
                     /note="surface patch"
                     /db_xref="CDD:239227"
     Site            952..955
                     /site_type="active"
                     /note="thioester region [active]"
                     /db_xref="CDD:239227"
     Site            order(1052,1056,1058,1066)
                     /site_type="other"
                     /note="specificity defining residues"
                     /db_xref="CDD:239227"
     Region          1342..1431
                     /region_name="A2M_recep"
                     /note="A-macroglobulin receptor binding domain; pfam07677"
                     /db_xref="CDD:462226"
     CDS             1..1435
                     /gene="LOC104060631"
                     /coded_by="XM_009562442.2:137..4444"
                     /db_xref="GeneID:104060631"
ORIGIN      
        1 mkmwnpflls cllyilgtma qpryliiipa alpypssqrv cldlrgvekp vrvaltlvhp
       61 sgnlslyrkv vrnnwifecs rfqvprpagn qevgtvnlli snghyfnvke kkqvliyrtg
      121 tgtfiqmdkp iynpgqtvkf wivtltedfa pvkskysive vqdpnqnrig qwldvrpkqg
      181 iadlsfklad elslgtytis vgnlkvshtf tveervlqkf dvffegpaqi yasdktfqlr
      241 vcgrysygka vqgtmrvtlc qkskrrtqna skdicreysg ltaskgcftp svsmsvfsla
      301 pseedgklya easllemgtg vqintssqil isrrvaralf etpnayyipg vpyrgkinlq
      361 dhhgngmknr kvylvikvmr rrfiktyitd ssgtasfnld ttawnsssvs legrfsledl
      421 mqtprktdis ytnayhhlqp fhvttksfld ihplveklpc glrqnvqvtf tlsrddlged
      481 tsrvgfayyv tgkagivvrg qrtvqvgkls mlkgsfsipl tftadfspsp slvvyaifpn
      541 ggvaadsthf dvalcfenqv kvgfpakeay pgstvelelq aapgslcavq avdqnmflir
      601 peseltsqmv yglfpaayrh gypaqveeds dhcvkpqstt sllrgkpqhs fqsdvfnlfr
      661 nmglkifsnl likrpsqclh hpdrkptigg pftedqriik eqpqfktcgr lhhyfpetwi
      721 wnlfyvgsng srsvpvtapa aaaewkvktf cltgrrfgla pttslrtvqp yfvdvtlpys
      781 viqgetfvlk atvfhylqqc iqiyvalars snfqvepcrt crdreclcae esktftwnvt
      841 avqlgtlnit vrtevmdtmp rcggrkplla tvkrthilvk qlmvrpegvl vektyssflc
      901 prggnmaeer vslrlpdnvv kgsarasvsi lgdlmgtalq nldrlvqmph gcgeqnmvlf
      961 apivyvlqyl ektrqltpei keramgflrn gyqmqllyrh rdgsysffgq qdgqgntwlt
     1021 afvaksfska rkyiyvddkn iqdalhwleq nqlpsgcftt kgslfhsslk gsvddeislg
     1081 ayvaaallel gqplkgrlvq ttlrclqqav hnitniytea vlayafalag dyettqelly
     1141 kleeqaiksg gqihwspkps sldstdfwpd tqsvdielta yvllaylskp rvhagdmita
     1201 agivawltqq qnayggfast qdtvvalqal aryaartfsa sgqalvtvks qrsigkafqv
     1261 nhqkrlllqq aeltdipgqi lvqvqgnsci fsqtvlryhe pppwgavtft lrvnteltnc
     1321 sqanarvltv riltsyigtr vtsnmvivel sllsgfvlsp gsrmllerkt ivkkievkad
     1381 vvyiylekln desqtfllql eqviqmknlk panikvydyy qpeeralany navcs
//
LOCUS       XP_053925301            1435 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-2-macroglobulin-like protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053925301
VERSION     XP_053925301.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069326.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1435
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1435
                     /product="alpha-2-macroglobulin-like protein 1 isoform X1"
                     /calculated_mol_wt=160592
     Region          <128..1298
                     /region_name="YfaS"
                     /note="Uncharacterized conserved protein YfaS,
                     alpha-2-macroglobulin family [General function prediction
                     only]; COG2373"
                     /db_xref="CDD:441940"
     Region          938..1233
                     /region_name="A2M_2"
                     /note="Proteins similar to alpha2-macroglobulin (alpha
                     (2)-M). This group also contains the pregnancy zone
                     protein (PZP). Alpha(2)-M and PZP are broadly specific
                     proteinase inhibitors. Alpha (2)-M is a major carrier
                     protein in serum. The structural thioester...; cd02897"
                     /db_xref="CDD:239227"
     Site            order(952,954..955,958,998,1008,1011,1063,1065..1066,1217)
                     /site_type="other"
                     /note="surface patch"
                     /db_xref="CDD:239227"
     Site            952..955
                     /site_type="active"
                     /note="thioester region [active]"
                     /db_xref="CDD:239227"
     Site            order(1052,1056,1058,1066)
                     /site_type="other"
                     /note="specificity defining residues"
                     /db_xref="CDD:239227"
     Region          1342..1431
                     /region_name="A2M_recep"
                     /note="A-macroglobulin receptor binding domain; pfam07677"
                     /db_xref="CDD:462226"
     CDS             1..1435
                     /gene="LOC104060631"
                     /coded_by="XM_054069326.1:137..4444"
                     /db_xref="GeneID:104060631"
ORIGIN      
        1 mkmwnpflls cllyilgtma qpryliiipa alpypssqrv cldlrgvekp vrvaltlvhp
       61 sgnlslyrkv vrnnwifecs rfqvprpagn qevgtvnlli snghyfnvke kkqvliyrtg
      121 tgtfiqmdkp iynpgqtvkf wivtltedfa pvkskysive vqdpnqnrig qwldvrpkqg
      181 iadlsfklad elslgtytis vgnlkvshtf tveervlqkf dvffegpaqi yasdktfqlr
      241 vcgrysygka vqgtmrvtlc qkskrrtqna skdicreysg ltaskgcftp svsmsvfsla
      301 pseedgklya easllemgtg vqintssqil isrrvaralf etpnayyipg vpyrgkinlq
      361 dhhgngmknr kvylvikvmr rrfiktyitd ssgtasfnld ttawnsssvs legrfsledl
      421 mqtprktdis ytnayhhlqp fhvttksfld ihplveklpc glrqnvqvtf tlsrddlged
      481 tsrvgfayyv tgkagivvrg qrtvqvgkls mlkgsfsipl tftadfspsp slvvyaifpn
      541 ggvaadsthf dvalcfenqv kvgfpakeay pgstvelelq aapgslcavq avdqnmflir
      601 peseltsqmv yglfpaayrh gypaqveeds dhcvkpqstt sllrgkpqhs fqsdvfnlfr
      661 nmglkifsnl likrpsqclh hpdrkptigg pftedqriik eqpqfktcgr lhhyfpetwi
      721 wnlfyvgsng srsvpvtapa aaaewkvktf cltgrrfgla pttslrtvqp yfvdvtlpys
      781 viqgetfvlk atvfhylqqc iqiyvalars snfqvepcrt crdreclcae esktftwnvt
      841 avqlgtlnit vrtevmdtmp rcggrkplla tvkrthilvk qlmvrpegvl vektyssflc
      901 prggnmaeer vslrlpdnvv kgsarasvsi lgdlmgtalq nldrlvqmph gcgeqnmvlf
      961 apivyvlqyl ektrqltpei keramgflrn gyqmqllyrh rdgsysffgq qdgqgntwlt
     1021 afvaksfska rkyiyvddkn iqdalhwleq nqlpsgcftt kgslfhsslk gsvddeislg
     1081 ayvaaallel gqplkgrlvq ttlrclqqav hnitniytea vlayafalag dyettqelly
     1141 kleeqaiksg gqihwspkps sldstdfwpd tqsvdielta yvllaylskp rvhagdmita
     1201 agivawltqq qnayggfast qdtvvalqal aryaartfsa sgqalvtvks qrsigkafqv
     1261 nhqkrlllqq aeltdipgqi lvqvqgnsci fsqtvlryhe pppwgavtft lrvnteltnc
     1321 sqanarvltv riltsyigtr vtsnmvivel sllsgfvlsp gsrmllerkt ivkkievkad
     1381 vvyiylekln desqtfllql eqviqmknlk panikvydyy qpeeralany navcs
//
LOCUS       XP_053925308            1360 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-2-macroglobulin-like protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053925308
VERSION     XP_053925308.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069333.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1360
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1360
                     /product="alpha-2-macroglobulin-like protein 1 isoform X2"
                     /calculated_mol_wt=152549
     Region          <128..1223
                     /region_name="YfaS"
                     /note="Uncharacterized conserved protein YfaS,
                     alpha-2-macroglobulin family [General function prediction
                     only]; COG2373"
                     /db_xref="CDD:441940"
     Region          863..1158
                     /region_name="A2M_2"
                     /note="Proteins similar to alpha2-macroglobulin (alpha
                     (2)-M). This group also contains the pregnancy zone
                     protein (PZP). Alpha(2)-M and PZP are broadly specific
                     proteinase inhibitors. Alpha (2)-M is a major carrier
                     protein in serum. The structural thioester...; cd02897"
                     /db_xref="CDD:239227"
     Site            order(877,879..880,883,923,933,936,988,990..991,1142)
                     /site_type="other"
                     /note="surface patch"
                     /db_xref="CDD:239227"
     Site            877..880
                     /site_type="active"
                     /note="thioester region [active]"
                     /db_xref="CDD:239227"
     Site            order(977,981,983,991)
                     /site_type="other"
                     /note="specificity defining residues"
                     /db_xref="CDD:239227"
     Region          1267..1356
                     /region_name="A2M_recep"
                     /note="A-macroglobulin receptor binding domain; pfam07677"
                     /db_xref="CDD:462226"
     CDS             1..1360
                     /gene="LOC104060631"
                     /coded_by="XM_054069333.1:137..4219"
                     /db_xref="GeneID:104060631"
ORIGIN      
        1 mkmwnpflls cllyilgtma qpryliiipa alpypssqrv cldlrgvekp vrvaltlvhp
       61 sgnlslyrkv vrnnwifecs rfqvprpagn qevgtvnlli snghyfnvke kkqvliyrtg
      121 tgtfiqmdkp iynpgqtvkf wivtltedfa pvkskysive vqdpnqnrig qwldvrpkqg
      181 iadlsfklad elslgtytis vgnlkvshtf tveervlqkf dvffegpaqi yasdktfqlr
      241 vcgrysygka vqgtmrvtlc qkskrrtqna skdicreysg linlqdhhgn gmknrkvylv
      301 ikvmrrrfik tyitdssgta sfnldttawn sssvslegrf sledlmqtpr ktdisytnay
      361 hhlqpfhvtt ksfldihplv eklpcglrqn vqvtftlsrd dlgedtsrvg fayyvtgkag
      421 ivvrgqrtvq vgklsmlkgs fsipltftad fspspslvvy aifpnggvaa dsthfdvalc
      481 fenqvkvgfp akeaypgstv elelqaapgs lcavqavdqn mflirpesel tsqmvyglfp
      541 aayrhgypaq veedsdhcvk pqsttsllrg kpqhsfqsdv fnlfrnmglk ifsnllikrp
      601 sqclhhpdrk ptiggpfted qriikeqpqf ktcgrlhhyf petwiwnlfy vgsngsrsvp
      661 vtapaaaaew kvktfcltgr rfglapttsl rtvqpyfvdv tlpysviqge tfvlkatvfh
      721 ylqqciqiyv alarssnfqv epcrtcrdre clcaeesktf twnvtavqlg tlnitvrtev
      781 mdtmprcggr kpllatvkrt hilvkqlmvr pegvlvekty ssflcprggn maeervslrl
      841 pdnvvkgsar asvsilgdlm gtalqnldrl vqmphgcgeq nmvlfapivy vlqylektrq
      901 ltpeikeram gflrngyqmq llyrhrdgsy sffgqqdgqg ntwltafvak sfskarkyiy
      961 vddkniqdal hwleqnqlps gcfttkgslf hsslkgsvdd eislgayvaa allelgqplk
     1021 grlvqttlrc lqqavhnitn iyteavlaya falagdyett qellykleeq aiksggqihw
     1081 spkpssldst dfwpdtqsvd ieltayvlla ylskprvhag dmitaagiva wltqqqnayg
     1141 gfastqdtvv alqalaryaa rtfsasgqal vtvksqrsig kafqvnhqkr lllqqaeltd
     1201 ipgqilvqvq gnscifsqtv lryhepppwg avtftlrvnt eltncsqana rvltvrilts
     1261 yigtrvtsnm vivelsllsg fvlspgsrml lerktivkki evkadvvyiy leklndesqt
     1321 fllqleqviq mknlkpanik vydyyqpeer alanynavcs
//
LOCUS       XP_053925320             995 aa            linear   VRT 09-MAR-2023
DEFINITION  polyhomeotic-like protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053925320
VERSION     XP_053925320.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069345.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..995
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..995
                     /product="polyhomeotic-like protein 1 isoform X1"
                     /calculated_mol_wt=104695
     Region          786..818
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          819..926
                     /region_name="PHC2_SAM_assoc"
                     /note="Unstructured region on Polyhomeotic-like protein 1
                     and 2; pfam16616"
                     /db_xref="CDD:465202"
     Region          926..994
                     /region_name="SAM_Ph1,2,3"
                     /note="SAM domain of Ph (polyhomeotic) proteins of
                     Polycomb group; cd09577"
                     /db_xref="CDD:188976"
     Site            order(944..945,979..980,983..984,987)
                     /site_type="other"
                     /note="oligomer interface EH [polypeptide binding]"
                     /db_xref="CDD:188976"
     Site            order(955..959,961..962,965..966,970,975)
                     /site_type="other"
                     /note="oligomer interface ML [polypeptide binding]"
                     /db_xref="CDD:188976"
     CDS             1..995
                     /gene="PHC1"
                     /coded_by="XM_054069345.1:566..3553"
                     /db_xref="GeneID:104060627"
ORIGIN      
        1 meteseqnss stsgssssgg strpqisqms lyerqavqal qalqrqpnaa qyfhqfmlqq
       61 qlnsaqlhsl aavqqatiaa srqasspnts tpqqttttqa sinlattsaa qlisrsqsvs
      121 spsattltqs vllgnttspp lnqsqaqmyl rpqlgnllqv nrtlgrnvpl asqlilmpng
      181 avaavqqevp ptqspgvhad tdqvqnlavr sqqtsatnaq lqgsaqkaal pgssqasglp
      241 qatntgqtla vaqassgstg qslnlsqgaa gssgvsggvv asggsqtstg lsqtslagaa
      301 gscqrkgtgv vqplpvaaaq avtvsqgsqt eaenaaskkg etdsggqqtv gmnltrtatp
      361 apsqtlissa tytqiqphsl iqqqqqihlq kqvviqqqia ihhqqqfqhr qsqllhtath
      421 lqlaqqqqqq qapsltqqqq qaqplqqqap pqnqqqaqtl vvqpmlqsqp qpmqlqqdsp
      481 cqpatkspvp iqskslvtpi kppqlgpakm satqqplphi pvqvvgtrqq gsgqaqalgl
      541 aqiaaavpts rgmpavvqpv shahaassss ssgpassqea ppvttgvnla qvqgtahmvk
      601 spasspvvaq mpaafymqsv qlpaksqtla vkrkaeseee keespsvtal lparsspvtd
      661 gpqnveeksg lgdksdpaai attntasseg asvtptsapn pnlamvsrqi gdskppqaiv
      721 kpqilthiie gfviqegaep fpvgcsqllk esekplqgea psgqsenlss nslggdnasv
      781 eldkkanllk ceycgkyapa tqfrgskrfc smtcakrynv scshqfrlqr kkmkefqean
      841 yvrvrrrgpr rssseiartk iqgkrhrgqe dssrgsdnss ydealsptsp gplsvrashg
      901 drdlanssva pptpdlhgin pvflssspsr wsveevyefi aslqgcqeia eefrsqeidg
      961 qallllkeeh lmsamniklg palkicakin vlket
//
LOCUS       XP_053925328             995 aa            linear   VRT 09-MAR-2023
DEFINITION  polyhomeotic-like protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053925328
VERSION     XP_053925328.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069353.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..995
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..995
                     /product="polyhomeotic-like protein 1 isoform X1"
                     /calculated_mol_wt=104695
     Region          786..818
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          819..926
                     /region_name="PHC2_SAM_assoc"
                     /note="Unstructured region on Polyhomeotic-like protein 1
                     and 2; pfam16616"
                     /db_xref="CDD:465202"
     Region          926..994
                     /region_name="SAM_Ph1,2,3"
                     /note="SAM domain of Ph (polyhomeotic) proteins of
                     Polycomb group; cd09577"
                     /db_xref="CDD:188976"
     Site            order(944..945,979..980,983..984,987)
                     /site_type="other"
                     /note="oligomer interface EH [polypeptide binding]"
                     /db_xref="CDD:188976"
     Site            order(955..959,961..962,965..966,970,975)
                     /site_type="other"
                     /note="oligomer interface ML [polypeptide binding]"
                     /db_xref="CDD:188976"
     CDS             1..995
                     /gene="PHC1"
                     /coded_by="XM_054069353.1:84..3071"
                     /db_xref="GeneID:104060627"
ORIGIN      
        1 meteseqnss stsgssssgg strpqisqms lyerqavqal qalqrqpnaa qyfhqfmlqq
       61 qlnsaqlhsl aavqqatiaa srqasspnts tpqqttttqa sinlattsaa qlisrsqsvs
      121 spsattltqs vllgnttspp lnqsqaqmyl rpqlgnllqv nrtlgrnvpl asqlilmpng
      181 avaavqqevp ptqspgvhad tdqvqnlavr sqqtsatnaq lqgsaqkaal pgssqasglp
      241 qatntgqtla vaqassgstg qslnlsqgaa gssgvsggvv asggsqtstg lsqtslagaa
      301 gscqrkgtgv vqplpvaaaq avtvsqgsqt eaenaaskkg etdsggqqtv gmnltrtatp
      361 apsqtlissa tytqiqphsl iqqqqqihlq kqvviqqqia ihhqqqfqhr qsqllhtath
      421 lqlaqqqqqq qapsltqqqq qaqplqqqap pqnqqqaqtl vvqpmlqsqp qpmqlqqdsp
      481 cqpatkspvp iqskslvtpi kppqlgpakm satqqplphi pvqvvgtrqq gsgqaqalgl
      541 aqiaaavpts rgmpavvqpv shahaassss ssgpassqea ppvttgvnla qvqgtahmvk
      601 spasspvvaq mpaafymqsv qlpaksqtla vkrkaeseee keespsvtal lparsspvtd
      661 gpqnveeksg lgdksdpaai attntasseg asvtptsapn pnlamvsrqi gdskppqaiv
      721 kpqilthiie gfviqegaep fpvgcsqllk esekplqgea psgqsenlss nslggdnasv
      781 eldkkanllk ceycgkyapa tqfrgskrfc smtcakrynv scshqfrlqr kkmkefqean
      841 yvrvrrrgpr rssseiartk iqgkrhrgqe dssrgsdnss ydealsptsp gplsvrashg
      901 drdlanssva pptpdlhgin pvflssspsr wsveevyefi aslqgcqeia eefrsqeidg
      961 qallllkeeh lmsamniklg palkicakin vlket
//
LOCUS       XP_053925336             995 aa            linear   VRT 09-MAR-2023
DEFINITION  polyhomeotic-like protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053925336
VERSION     XP_053925336.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069361.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..995
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..995
                     /product="polyhomeotic-like protein 1 isoform X1"
                     /calculated_mol_wt=104695
     Region          786..818
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          819..926
                     /region_name="PHC2_SAM_assoc"
                     /note="Unstructured region on Polyhomeotic-like protein 1
                     and 2; pfam16616"
                     /db_xref="CDD:465202"
     Region          926..994
                     /region_name="SAM_Ph1,2,3"
                     /note="SAM domain of Ph (polyhomeotic) proteins of
                     Polycomb group; cd09577"
                     /db_xref="CDD:188976"
     Site            order(944..945,979..980,983..984,987)
                     /site_type="other"
                     /note="oligomer interface EH [polypeptide binding]"
                     /db_xref="CDD:188976"
     Site            order(955..959,961..962,965..966,970,975)
                     /site_type="other"
                     /note="oligomer interface ML [polypeptide binding]"
                     /db_xref="CDD:188976"
     CDS             1..995
                     /gene="PHC1"
                     /coded_by="XM_054069361.1:92..3079"
                     /db_xref="GeneID:104060627"
ORIGIN      
        1 meteseqnss stsgssssgg strpqisqms lyerqavqal qalqrqpnaa qyfhqfmlqq
       61 qlnsaqlhsl aavqqatiaa srqasspnts tpqqttttqa sinlattsaa qlisrsqsvs
      121 spsattltqs vllgnttspp lnqsqaqmyl rpqlgnllqv nrtlgrnvpl asqlilmpng
      181 avaavqqevp ptqspgvhad tdqvqnlavr sqqtsatnaq lqgsaqkaal pgssqasglp
      241 qatntgqtla vaqassgstg qslnlsqgaa gssgvsggvv asggsqtstg lsqtslagaa
      301 gscqrkgtgv vqplpvaaaq avtvsqgsqt eaenaaskkg etdsggqqtv gmnltrtatp
      361 apsqtlissa tytqiqphsl iqqqqqihlq kqvviqqqia ihhqqqfqhr qsqllhtath
      421 lqlaqqqqqq qapsltqqqq qaqplqqqap pqnqqqaqtl vvqpmlqsqp qpmqlqqdsp
      481 cqpatkspvp iqskslvtpi kppqlgpakm satqqplphi pvqvvgtrqq gsgqaqalgl
      541 aqiaaavpts rgmpavvqpv shahaassss ssgpassqea ppvttgvnla qvqgtahmvk
      601 spasspvvaq mpaafymqsv qlpaksqtla vkrkaeseee keespsvtal lparsspvtd
      661 gpqnveeksg lgdksdpaai attntasseg asvtptsapn pnlamvsrqi gdskppqaiv
      721 kpqilthiie gfviqegaep fpvgcsqllk esekplqgea psgqsenlss nslggdnasv
      781 eldkkanllk ceycgkyapa tqfrgskrfc smtcakrynv scshqfrlqr kkmkefqean
      841 yvrvrrrgpr rssseiartk iqgkrhrgqe dssrgsdnss ydealsptsp gplsvrashg
      901 drdlanssva pptpdlhgin pvflssspsr wsveevyefi aslqgcqeia eefrsqeidg
      961 qallllkeeh lmsamniklg palkicakin vlket
//
LOCUS       XP_053925345             995 aa            linear   VRT 09-MAR-2023
DEFINITION  polyhomeotic-like protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053925345
VERSION     XP_053925345.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069370.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..995
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..995
                     /product="polyhomeotic-like protein 1 isoform X1"
                     /calculated_mol_wt=104695
     Region          786..818
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          819..926
                     /region_name="PHC2_SAM_assoc"
                     /note="Unstructured region on Polyhomeotic-like protein 1
                     and 2; pfam16616"
                     /db_xref="CDD:465202"
     Region          926..994
                     /region_name="SAM_Ph1,2,3"
                     /note="SAM domain of Ph (polyhomeotic) proteins of
                     Polycomb group; cd09577"
                     /db_xref="CDD:188976"
     Site            order(944..945,979..980,983..984,987)
                     /site_type="other"
                     /note="oligomer interface EH [polypeptide binding]"
                     /db_xref="CDD:188976"
     Site            order(955..959,961..962,965..966,970,975)
                     /site_type="other"
                     /note="oligomer interface ML [polypeptide binding]"
                     /db_xref="CDD:188976"
     CDS             1..995
                     /gene="PHC1"
                     /coded_by="XM_054069370.1:51..3038"
                     /db_xref="GeneID:104060627"
ORIGIN      
        1 meteseqnss stsgssssgg strpqisqms lyerqavqal qalqrqpnaa qyfhqfmlqq
       61 qlnsaqlhsl aavqqatiaa srqasspnts tpqqttttqa sinlattsaa qlisrsqsvs
      121 spsattltqs vllgnttspp lnqsqaqmyl rpqlgnllqv nrtlgrnvpl asqlilmpng
      181 avaavqqevp ptqspgvhad tdqvqnlavr sqqtsatnaq lqgsaqkaal pgssqasglp
      241 qatntgqtla vaqassgstg qslnlsqgaa gssgvsggvv asggsqtstg lsqtslagaa
      301 gscqrkgtgv vqplpvaaaq avtvsqgsqt eaenaaskkg etdsggqqtv gmnltrtatp
      361 apsqtlissa tytqiqphsl iqqqqqihlq kqvviqqqia ihhqqqfqhr qsqllhtath
      421 lqlaqqqqqq qapsltqqqq qaqplqqqap pqnqqqaqtl vvqpmlqsqp qpmqlqqdsp
      481 cqpatkspvp iqskslvtpi kppqlgpakm satqqplphi pvqvvgtrqq gsgqaqalgl
      541 aqiaaavpts rgmpavvqpv shahaassss ssgpassqea ppvttgvnla qvqgtahmvk
      601 spasspvvaq mpaafymqsv qlpaksqtla vkrkaeseee keespsvtal lparsspvtd
      661 gpqnveeksg lgdksdpaai attntasseg asvtptsapn pnlamvsrqi gdskppqaiv
      721 kpqilthiie gfviqegaep fpvgcsqllk esekplqgea psgqsenlss nslggdnasv
      781 eldkkanllk ceycgkyapa tqfrgskrfc smtcakrynv scshqfrlqr kkmkefqean
      841 yvrvrrrgpr rssseiartk iqgkrhrgqe dssrgsdnss ydealsptsp gplsvrashg
      901 drdlanssva pptpdlhgin pvflssspsr wsveevyefi aslqgcqeia eefrsqeidg
      961 qallllkeeh lmsamniklg palkicakin vlket
//
LOCUS       XP_053925355             987 aa            linear   VRT 09-MAR-2023
DEFINITION  polyhomeotic-like protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053925355
VERSION     XP_053925355.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069380.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..987
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..987
                     /product="polyhomeotic-like protein 1 isoform X2"
                     /calculated_mol_wt=103831
     Region          778..810
                     /region_name="zf-FCS"
                     /note="MYM-type Zinc finger with FCS sequence motif;
                     pfam06467"
                     /db_xref="CDD:428958"
     Region          811..918
                     /region_name="PHC2_SAM_assoc"
                     /note="Unstructured region on Polyhomeotic-like protein 1
                     and 2; pfam16616"
                     /db_xref="CDD:465202"
     Region          918..986
                     /region_name="SAM_Ph1,2,3"
                     /note="SAM domain of Ph (polyhomeotic) proteins of
                     Polycomb group; cd09577"
                     /db_xref="CDD:188976"
     Site            order(936..937,971..972,975..976,979)
                     /site_type="other"
                     /note="oligomer interface EH [polypeptide binding]"
                     /db_xref="CDD:188976"
     Site            order(947..951,953..954,957..958,962,967)
                     /site_type="other"
                     /note="oligomer interface ML [polypeptide binding]"
                     /db_xref="CDD:188976"
     CDS             1..987
                     /gene="PHC1"
                     /coded_by="XM_054069380.1:567..3530"
                     /db_xref="GeneID:104060627"
ORIGIN      
        1 meteseqnss stsgssssgg strpqisqms lyerqavqal qalqrqpnaa qyfhqfmlqq
       61 qlnsaqlhsl aavqqatiaa srqasspnts tpqqttttqa sinlattsaa qlisrsqsvs
      121 spsattltqs vllgnttspp lnqsqaqmyl rvnrtlgrnv plasqlilmp ngavaavqqe
      181 vpptqspgvh adtdqvqnla vrsqqtsatn aqlqgsaqka alpgssqasg lpqatntgqt
      241 lavaqassgs tgqslnlsqg aagssgvsgg vvasggsqts tglsqtslag aagscqrkgt
      301 gvvqplpvaa aqavtvsqgs qteaenaask kgetdsggqq tvgmnltrta tpapsqtlis
      361 satytqiqph sliqqqqqih lqkqvviqqq iaihhqqqfq hrqsqllhta thlqlaqqqq
      421 qqqapsltqq qqqaqplqqq appqnqqqaq tlvvqpmlqs qpqpmqlqqd spcqpatksp
      481 vpiqskslvt pikppqlgpa kmsatqqplp hipvqvvgtr qqgsgqaqal glaqiaaavp
      541 tsrgmpavvq pvshahaass ssssgpassq eappvttgvn laqvqgtahm vkspasspvv
      601 aqmpaafymq svqlpaksqt lavkrkaese eekeespsvt allparsspv tdgpqnveek
      661 sglgdksdpa aiattntass egasvtptsa pnpnlamvsr qigdskppqa ivkpqilthi
      721 iegfviqega epfpvgcsql lkesekplqg eapsgqsenl ssnslggdna sveldkkanl
      781 lkceycgkya patqfrgskr fcsmtcakry nvscshqfrl qrkkmkefqe anyvrvrrrg
      841 prrssseiar tkiqgkrhrg qedssrgsdn ssydealspt spgplsvras hgdrdlanss
      901 vapptpdlhg inpvflsssp srwsveevye fiaslqgcqe iaeefrsqei dgqallllke
      961 ehlmsamnik lgpalkicak invlket
//
LOCUS       XP_053925368             278 aa            linear   VRT 09-MAR-2023
DEFINITION  cation-dependent mannose-6-phosphate receptor [Cuculus canorus].
ACCESSION   XP_053925368
VERSION     XP_053925368.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069393.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..278
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..278
                     /product="cation-dependent mannose-6-phosphate receptor"
                     /calculated_mol_wt=30853
     Region          23..278
                     /region_name="Man-6-P_recep"
                     /note="Mannose-6-phosphate receptor; pfam02157"
                     /db_xref="CDD:460468"
     CDS             1..278
                     /gene="M6PR"
                     /coded_by="XM_054069393.1:319..1155"
                     /db_xref="GeneID:104060628"
ORIGIN      
        1 msspchtsam lvvfmalilg vvadqskerg cdvigdesse sqmerallkk leplsqmrfn
       61 vtvekgkten yvyhfrvcre vnsnlhdfsg lvqmdrqsgr stvigrinet qvfngsdwim
      121 liykggdsyg shcsgekrra vimisckrgv tassfsiise erekeqecfy lfemdssvac
      181 paveshlsvg sillitfasl iavyiiggfl yqrlivgakg meqfphfafw qdlgnlvadg
      241 cdfvcrskpr napaayrgvg ddqlgeesee rddhllpm
//
LOCUS       XP_053925380             167 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H2A-beta, sperm [Cuculus canorus].
ACCESSION   XP_053925380
VERSION     XP_053925380.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069405.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..167
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..167
                     /product="histone H2A-beta, sperm"
                     /calculated_mol_wt=18242
     Region          38..125
                     /region_name="HFD_H2A"
                     /note="histone-fold domain found in histone H2A and
                     similar proteins; cd00074"
                     /db_xref="CDD:467020"
     Site            order(38..40,51..52,55,59,100,102..104,107)
                     /site_type="other"
                     /note="Hif1 binding site [polypeptide binding]"
                     /db_xref="CDD:467020"
     Site            order(38..40,43,51..52,55,65..68,97..98,100)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:467020"
     Site            order(40..42,47..49,52..53,55..57,65,67,69..70,72..87,
                     89..91,93,98,100..103,106,110,115,118..124)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467020"
     Site            order(59..61,64,104,120,122..125)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:467020"
     Site            order(61,64)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467020"
     CDS             1..167
                     /gene="LOC104060653"
                     /coded_by="XM_054069405.1:1581..2084"
                     /db_xref="GeneID:104060653"
ORIGIN      
        1 msgaedsytv seqeteseas sseapsersk akvkrcyssr ssragllfpv srverhlrrg
       61 hfakrfaana pvylaavmqc vthklldvag evakksnqrr ispshlkmav qkssalkkll
      121 qdsmlrhcgr avlqservap lsrkkmskkg kssrpraara yataaak
//
LOCUS       XP_009560764            1475 aa            linear   VRT 09-MAR-2023
DEFINITION  ovostatin [Cuculus canorus].
ACCESSION   XP_009560764
VERSION     XP_009560764.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009562469.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009560764.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1475
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1475
                     /product="ovostatin"
                     /calculated_mol_wt=165947
     Region          <140..1460
                     /region_name="YfaS"
                     /note="Uncharacterized conserved protein YfaS,
                     alpha-2-macroglobulin family [General function prediction
                     only]; COG2373"
                     /db_xref="CDD:441940"
     Region          967..1265
                     /region_name="A2M_2"
                     /note="Proteins similar to alpha2-macroglobulin (alpha
                     (2)-M). This group also contains the pregnancy zone
                     protein (PZP). Alpha(2)-M and PZP are broadly specific
                     proteinase inhibitors. Alpha (2)-M is a major carrier
                     protein in serum. The structural thioester...; cd02897"
                     /db_xref="CDD:239227"
     Site            order(981,983..984,987,1027,1037,1040,1092,1094..1095,
                     1249)
                     /site_type="other"
                     /note="surface patch"
                     /db_xref="CDD:239227"
     Site            981..984
                     /site_type="active"
                     /note="thioester region [active]"
                     /db_xref="CDD:239227"
     Site            order(1081,1085,1087,1095)
                     /site_type="other"
                     /note="specificity defining residues"
                     /db_xref="CDD:239227"
     CDS             1..1475
                     /gene="LOC104060658"
                     /coded_by="XM_009562469.2:2614..7041"
                     /db_xref="GeneID:104060658"
ORIGIN      
        1 mncflgrkhi sffclpvrkm gmkfllgvll lhvtaakepe lqyilmvpav lqtdspgqic
       61 lqflnlneti svrvileyga vnttifektm mesndlqcfs fkippvhsap lafiafsakg
      121 ttvsleerrs vmvwttesiv fvqtdksiyk pgqsvmfrvv aldfnfkpvq eiyplitiqd
      181 prgnrifqwq nvtsemniiq iefllteepi lgnykiivak ksghkkthsf lveeyvlpkf
      241 dvtvtapesl tvldseftvk icgvytygqp vegqvqisvc rdfdsygsck kspvcqsftk
      301 dletegclsq vfstnifeln rigymrylev kaivtekgtg lqftatqsis itrvmssmqf
      361 ekmdrhykrg ipyfgqiklv dkdnspisne viqlfvnnkn tdnfttdang vaefsidtsk
      421 mfdheinlka aykvsdqcht dgwiepsypd asfsiqrfys wtssfvriep lwedlscgqk
      481 kmitvhyiln tegyksinsm nfyyvamakg kivitgkikv niqveqngtf tvplvvteem
      541 spalrllvyt lhpakelvad svrfpvekcf knkvqlqfse krmrsasnvs lvieaaassf
      601 cavravdqsv lllksetels aetiynlhpl qdlqgyifng lnldddpqdp cvssenifhk
      661 glyytpvmsg lgpdvyqslr dmgmkfftns kirqpvvctt etvrplpyfl nsgfmasthh
      721 vkssstevar eergkrltle tireffpetw iwdmilinst gkasisytip dtitewkasa
      781 fcveeltgfg msapatlkaf qpffvdltlp ystnqgeyfl lranvfsyld hcikinvsls
      841 gsihyqakli speddgcvca kqrktyvwnv fpkaignvvf sitaetkddg acgdkalrni
      901 sidyrdtqir tllvepegir rektqnalic kkdnmvtqdi alepptnvve gsarvsfsvv
      961 gdimgtamqn vhqllqmpfg cgeqnmvlfa pniyvldyln ktgqlseevk skaigylvsg
     1021 yqkqlaykhp dgsysvfgtr dkegntwlta fvyksfaqas hliyvddnvq aqtlmwlark
     1081 qkpdgcfrsv gtlfnnalkg gvdnelslsa yitvamlear hsilypvvrn affcletase
     1141 knirdiytqa lmayafclag kaekcesflr elqksakevd gsqywdqker sqsekspsfl
     1201 dhapsaevei tsyvllally kpnrnqedls kasgivqwii rqqnpyggfs stqdtvialq
     1261 alaaygeaty nsvtqnivki mskktfekvf vvnnenrlll qqihlpkvpg kysltvngsg
     1321 cvfvqtalry nihlpegasg fslsvqtsna scpldrpakf dvvltssytg krrssnmvii
     1381 dvkmlsgfvp vkssldklid ghtvmqvenk knhvllylen isqkkskkit fsveqdfvvt
     1441 hpkpapvqiy dyyeteeyav aqytspcket vaemd
//
LOCUS       XP_053925467             705 aa            linear   VRT 09-MAR-2023
DEFINITION  double-strand break repair protein MRE11 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053925467
VERSION     XP_053925467.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069492.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..705
                     /product="double-strand break repair protein MRE11 isoform
                     X1"
                     /calculated_mol_wt=80068
     Region          11..402
                     /region_name="mre11"
                     /note="DNA repair protein (mre11); TIGR00583"
                     /db_xref="CDD:273153"
     CDS             1..705
                     /gene="MRE11"
                     /coded_by="XM_054069492.1:228..2345"
                     /db_xref="GeneID:104064086"
ORIGIN      
        1 mstvnsqddd dtfkiliatd ihlgylekdp vrgndtfvtf deildhaqkn evdfvllggd
       61 lfhenkpsrk tvhscleslr kycmgdrpvq feilsdqavn fhyskfpwvn yqdrnlnisi
      121 pifsvhgnhd dptgadalca ldilscagll nhfgrsasve kidispillr kgrtkialyg
      181 lgaipderly rmfvnkqvtm lrpkededsw fnlfvihqnr skhgatnyip eqflddfinl
      241 vvwgheheck iapsqneqqr fyvsqpgssv vtslspgeav kkhigllhvk gkkmkmqkia
      301 letvrpfhme divladhpdl fnpdnpkvtq aiqafcmekv elmldnaere rlgnprqpqk
      361 plirlrvdyt ggfepfsvhr fsqkyvdrva npkdiihffr hreqkeknds dlnfgklvsr
      421 psegttlrve dlvkqyfqta ekkvqlsllt ergmgeavqe fvdkeekdai eellkfqlek
      481 tqrflkerrt daeegkidee vrkfresrkk nteeedeevr eamtraranr sedavlvaas
      541 sdeelmdtgm kgsgdsddgl patltrgrgr argrargarg qnstargssr rgrgstsqes
      601 atssrtykpv sapaknrsim dvfrssrrep slnssksyse diidddsdle disivpsyka
      661 nqrmsttssl nkrgsqsqts rgvdfesdqd efdpfqstaa srrtk
//
LOCUS       XP_053925478             705 aa            linear   VRT 09-MAR-2023
DEFINITION  double-strand break repair protein MRE11 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053925478
VERSION     XP_053925478.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069503.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..705
                     /product="double-strand break repair protein MRE11 isoform
                     X1"
                     /calculated_mol_wt=80068
     Region          11..402
                     /region_name="mre11"
                     /note="DNA repair protein (mre11); TIGR00583"
                     /db_xref="CDD:273153"
     CDS             1..705
                     /gene="MRE11"
                     /coded_by="XM_054069503.1:181..2298"
                     /db_xref="GeneID:104064086"
ORIGIN      
        1 mstvnsqddd dtfkiliatd ihlgylekdp vrgndtfvtf deildhaqkn evdfvllggd
       61 lfhenkpsrk tvhscleslr kycmgdrpvq feilsdqavn fhyskfpwvn yqdrnlnisi
      121 pifsvhgnhd dptgadalca ldilscagll nhfgrsasve kidispillr kgrtkialyg
      181 lgaipderly rmfvnkqvtm lrpkededsw fnlfvihqnr skhgatnyip eqflddfinl
      241 vvwgheheck iapsqneqqr fyvsqpgssv vtslspgeav kkhigllhvk gkkmkmqkia
      301 letvrpfhme divladhpdl fnpdnpkvtq aiqafcmekv elmldnaere rlgnprqpqk
      361 plirlrvdyt ggfepfsvhr fsqkyvdrva npkdiihffr hreqkeknds dlnfgklvsr
      421 psegttlrve dlvkqyfqta ekkvqlsllt ergmgeavqe fvdkeekdai eellkfqlek
      481 tqrflkerrt daeegkidee vrkfresrkk nteeedeevr eamtraranr sedavlvaas
      541 sdeelmdtgm kgsgdsddgl patltrgrgr argrargarg qnstargssr rgrgstsqes
      601 atssrtykpv sapaknrsim dvfrssrrep slnssksyse diidddsdle disivpsyka
      661 nqrmsttssl nkrgsqsqts rgvdfesdqd efdpfqstaa srrtk
//
LOCUS       XP_053925489             622 aa            linear   VRT 09-MAR-2023
DEFINITION  double-strand break repair protein MRE11 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053925489
VERSION     XP_053925489.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069514.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..622
                     /product="double-strand break repair protein MRE11 isoform
                     X2"
                     /calculated_mol_wt=70585
     Region          1..319
                     /region_name="mre11"
                     /note="DNA repair protein (mre11); TIGR00583"
                     /db_xref="CDD:273153"
     CDS             1..622
                     /gene="MRE11"
                     /coded_by="XM_054069514.1:211..2079"
                     /db_xref="GeneID:104064086"
ORIGIN      
        1 mgdrpvqfei lsdqavnfhy skfpwvnyqd rnlnisipif svhgnhddpt gadalcaldi
       61 lscagllnhf grsasvekid ispillrkgr tkialyglga ipderlyrmf vnkqvtmlrp
      121 kededswfnl fvihqnrskh gatnyipeqf lddfinlvvw gheheckiap sqneqqrfyv
      181 sqpgssvvts lspgeavkkh igllhvkgkk mkmqkialet vrpfhmediv ladhpdlfnp
      241 dnpkvtqaiq afcmekvelm ldnaererlg nprqpqkpli rlrvdytggf epfsvhrfsq
      301 kyvdrvanpk diihffrhre qkekndsdln fgklvsrpse gttlrvedlv kqyfqtaekk
      361 vqlsllterg mgeavqefvd keekdaieel lkfqlektqr flkerrtdae egkideevrk
      421 fresrkknte eedeevream traranrsed avlvaassde elmdtgmkgs gdsddglpat
      481 ltrgrgrarg rargargqns targssrrgr gstsqesats srtykpvsap aknrsimdvf
      541 rssrrepsln ssksysedii dddsdledis ivpsykanqr msttsslnkr gsqsqtsrgv
      601 dfesdqdefd pfqstaasrr tk
//
LOCUS       XP_009564673             423 aa            linear   VRT 09-MAR-2023
DEFINITION  G-protein coupled receptor 83 [Cuculus canorus].
ACCESSION   XP_009564673
VERSION     XP_009564673.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566378.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564673.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..423
                     /product="G-protein coupled receptor 83"
                     /calculated_mol_wt=48089
     Region          72..356
                     /region_name="7tmA_GPR83"
                     /note="G protein-coupled receptor 83, member of the class
                     A family of seven-transmembrane G protein-coupled
                     receptors; cd15389"
                     /db_xref="CDD:320511"
     Region          73..99
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320511"
     Region          106..131
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320511"
     Site            order(128,131..132,144..149,151..152,155,198,200..204,236,
                     239..241,243..245,247..248,305,308..309,311..312,315,
                     323..324,326..328,331,334..335)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:320511"
     Region          144..174
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320511"
     Region          185..206
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320511"
     Region          236..265
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320511"
     Region          285..315
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320511"
     Region          324..349
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320511"
     CDS             1..423
                     /gene="GPR83"
                     /coded_by="XM_009566378.2:2540..3811"
                     /db_xref="GeneID:104064087"
ORIGIN      
        1 mlsffvwlsl ldlvdafvtp eklplngsle epfvipntsl ffswdndsla dwqnfvgrsr
       61 ygaesqsimv kallimaysf iivfslfgnv lvchvviktk rihsatslfi vnlaiadimi
      121 tllntpftla hfvnstwifg kgmchvsrfa qycslhvsal tltaiavdrh qvimhplkpr
      181 istakgviyi sviwimatcf slphaiyqkl fvfeyseevt rclclpdfpe padlfwkyld
      241 lttfillyvl plliisaayv tvakklwlrn vigdvtteqy falrrknkkt ikmlmlvvil
      301 favcwfplnc yvvllssqii htnnalyfaf hwfamsstcy npfiycwlnd sfrselkali
      361 svckkpprpv ehrlpstvps yqlawpendn fkrlqvshvl psasnihsgk tdisavepiv
      421 avs
//
LOCUS       XP_053925519             239 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat domain-containing protein 49 [Cuculus canorus].
ACCESSION   XP_053925519
VERSION     XP_053925519.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069544.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..239
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..239
                     /product="ankyrin repeat domain-containing protein 49"
                     /calculated_mol_wt=27312
     Region          <78..>219
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          79..106
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(80..81,84..86,88..89,93,97,106,108,110,114..115,
                     118..120,122..123,127,130,139,141,143,147..148,151..153,
                     155..156,160,163)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          108..139
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          141..171
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          174..207
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..239
                     /gene="ANKRD49"
                     /coded_by="XM_054069544.1:145..864"
                     /db_xref="GeneID:104064085"
ORIGIN      
        1 mnkdkqided ddddsdqfed fmenfnqlel lethrhlipv gtqscwsgqs dddddeqert
       61 eewyemqekr mekhpeklll waaennrlst vkrllsekla pvnardedqy tplhraaysg
      121 hldiahelva qgadvhaqtv dgwtplhsac kwnntkvaaf llqqgadina qtnglltplh
      181 iaagnknsre tlelllmdqy vkpdlknnld etaldiarrt dvyhylfeiv edcinavsp
//
LOCUS       XP_053925529             239 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat domain-containing protein 49 [Cuculus canorus].
ACCESSION   XP_053925529
VERSION     XP_053925529.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069554.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..239
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..239
                     /product="ankyrin repeat domain-containing protein 49"
                     /calculated_mol_wt=27312
     Region          <78..>219
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          79..106
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(80..81,84..86,88..89,93,97,106,108,110,114..115,
                     118..120,122..123,127,130,139,141,143,147..148,151..153,
                     155..156,160,163)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          108..139
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          141..171
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          174..207
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..239
                     /gene="ANKRD49"
                     /coded_by="XM_054069554.1:711..1430"
                     /db_xref="GeneID:104064085"
ORIGIN      
        1 mnkdkqided ddddsdqfed fmenfnqlel lethrhlipv gtqscwsgqs dddddeqert
       61 eewyemqekr mekhpeklll waaennrlst vkrllsekla pvnardedqy tplhraaysg
      121 hldiahelva qgadvhaqtv dgwtplhsac kwnntkvaaf llqqgadina qtnglltplh
      181 iaagnknsre tlelllmdqy vkpdlknnld etaldiarrt dvyhylfeiv edcinavsp
//
LOCUS       XP_053925538             239 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat domain-containing protein 49 [Cuculus canorus].
ACCESSION   XP_053925538
VERSION     XP_053925538.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069563.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..239
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..239
                     /product="ankyrin repeat domain-containing protein 49"
                     /calculated_mol_wt=27312
     Region          <78..>219
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          79..106
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(80..81,84..86,88..89,93,97,106,108,110,114..115,
                     118..120,122..123,127,130,139,141,143,147..148,151..153,
                     155..156,160,163)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          108..139
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          141..171
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          174..207
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..239
                     /gene="ANKRD49"
                     /coded_by="XM_054069563.1:153..872"
                     /db_xref="GeneID:104064085"
ORIGIN      
        1 mnkdkqided ddddsdqfed fmenfnqlel lethrhlipv gtqscwsgqs dddddeqert
       61 eewyemqekr mekhpeklll waaennrlst vkrllsekla pvnardedqy tplhraaysg
      121 hldiahelva qgadvhaqtv dgwtplhsac kwnntkvaaf llqqgadina qtnglltplh
      181 iaagnknsre tlelllmdqy vkpdlknnld etaldiarrt dvyhylfeiv edcinavsp
//
LOCUS       XP_053925551             691 aa            linear   VRT 09-MAR-2023
DEFINITION  mitochondrial intermediate peptidase [Cuculus canorus].
ACCESSION   XP_053925551
VERSION     XP_053925551.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069576.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..691
                     /product="mitochondrial intermediate peptidase"
                     /calculated_mol_wt=77964
     Region          43..676
                     /region_name="M3A_MIP"
                     /note="Peptidase M3 mitochondrial intermediate peptidase
                     (MIP); cd06457"
                     /db_xref="CDD:341052"
     Site            order(425..427,474..475,478,503,506,555,602..603,607..608,
                     610..611,614)
                     /site_type="active"
                     /db_xref="CDD:341052"
     CDS             1..691
                     /gene="MIPEP"
                     /coded_by="XM_054069576.1:30..2105"
                     /db_xref="GeneID:104064221"
ORIGIN      
        1 mlggwrgalg ralrgravst awspvgaafd arqrqrpgga gtglfgvpel scpegfqeaq
       61 dkalqeseql vqkacstppg petvvifdql sdalcrvadl adfvkiahpd fafreaaeea
      121 crnigtvvek lntdvdlcqs lrrlladevl mssldpetrr vaelfmfdfe isgihldeek
      181 rkkavnlnvr ildlcneflt gthlpnkidk hvlpehiryn ftaegnylqv aglhadcsdd
      241 lvreaaykif lypdagqlnc leelltsrns laqlvgyetf ahralqgtma knpetvtrfl
      301 eklsdqlser tqkdfemmtk mkmklnpqns klmpwdhpyy sgvlraeryn idpglycpff
      361 slgacmegln slfsqllgis lyaeqtqsge vwsedvrkla vvhetegllg yiycdffqrp
      421 dkphqdchft vrggrlreng eyqlpvvvlm lslphstrga ptllspgmme nlfhemgham
      481 hsmlgrtryq hvtgtrcatd faevpsilme yfandyrvvn qfarhyktgq plpknmvsrl
      541 ceskkvcaaa dmqlqvfyaa ldqiyhgkhp lkkstteilk etqekvyglp yvpntawqlr
      601 fshlvgygak yysylmsrav asmvwkqcfa qnpfdramge ryrremlahg ggrepilmve
      661 gmlqkspsve dfvdalvsdl dhdfetfimd s
//
LOCUS       XP_053925562             740 aa            linear   VRT 09-MAR-2023
DEFINITION  tudor domain-containing protein 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053925562
VERSION     XP_053925562.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069587.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..740
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..740
                     /product="tudor domain-containing protein 3 isoform X1"
                     /calculated_mol_wt=83225
     Region          15..165
                     /region_name="RMI1_N"
                     /note="RecQ mediated genome instability protein;
                     pfam08585"
                     /db_xref="CDD:462527"
     Region          287..325
                     /region_name="UBA_TDRD3"
                     /note="UBA domain of Tudor domain-containing protein 3
                     (TDRD3) and similar proteins; cd14282"
                     /db_xref="CDD:270468"
     Region          644..696
                     /region_name="Tudor_TDRD3"
                     /note="Tudor domain found in Tudor domain-containing
                     protein 3 (TDRD3) and similar proteins; cd20413"
                     /db_xref="CDD:410484"
     Site            order(654..656,661,679,682,684,686)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:410484"
     CDS             1..740
                     /gene="TDRD3"
                     /coded_by="XM_054069587.1:88..2310"
                     /db_xref="GeneID:104061849"
ORIGIN      
        1 madraraalc eagwylsdeg ieacisssek vntndiilva lntdlrtigk kflpsdingg
       61 kveklegpcv lqiqkirnva apkdneesqa aprmlrlqmt dghtsctave yssmskisln
      121 tppgtkikls givqvrngfl llddsntavl ggevehliek welqrslakh nrsnigtegg
      181 pppfvpfgqk cashvqvdsr eldrrktlqi tntvkavadn defekqrtaa iaevaksket
      241 ktfgggggss rsnlsvsagg nrnrelfqke kitkpegkne gvyrelvdek alkhitemgf
      301 skdaarqalm dnsnsleaal nfllnstkqk piqgppprgk gkgrgrtrpe deedlgnarp
      361 sapstlfdfl eskmgtltve epklqfqpph qvqhkvmnte qngikenhsr hisrndmrqp
      421 rnekpprfqr diqnsrqtle sgglprnrgp erhsslehwt deknksdkhy prndrpkdls
      481 ypiathpsdi tfkkrdngmq srvgkgvsft efkensaaqd ntdnnnqkrg krenqihnse
      541 nfcdrkarti sndafmvkse qhfavndyqn pgrtenfnav pngdaehfqk grrvgpikss
      601 gpttipsfdd kmlyyntgpk rrsgpikpek ilepsihmey gknwrpgdec falywednkf
      661 yraeiealhs sgttavvkfc dygnyeevll snirpvhadt weeeeetyeq tlefrrggdg
      721 qprrstrptq qfyqpprarn
//
LOCUS       XP_053925572             647 aa            linear   VRT 09-MAR-2023
DEFINITION  tudor domain-containing protein 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053925572
VERSION     XP_053925572.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069597.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..647
                     /product="tudor domain-containing protein 3 isoform X2"
                     /calculated_mol_wt=73173
     Region          <1..72
                     /region_name="RMI1_N"
                     /note="RecQ mediated genome instability protein;
                     pfam08585"
                     /db_xref="CDD:462527"
     Region          194..232
                     /region_name="UBA_TDRD3"
                     /note="UBA domain of Tudor domain-containing protein 3
                     (TDRD3) and similar proteins; cd14282"
                     /db_xref="CDD:270468"
     Region          551..603
                     /region_name="Tudor_TDRD3"
                     /note="Tudor domain found in Tudor domain-containing
                     protein 3 (TDRD3) and similar proteins; cd20413"
                     /db_xref="CDD:410484"
     Site            order(561..563,568,586,589,591,593)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:410484"
     CDS             1..647
                     /gene="TDRD3"
                     /coded_by="XM_054069597.1:266..2209"
                     /db_xref="GeneID:104061849"
ORIGIN      
        1 mlrlqmtdgh tsctaveyss mskislntpp gtkiklsgiv qvrngfllld dsntavlgge
       61 vehliekwel qrslakhnrs nigteggppp fvpfgqkcas hvqvdsreld rrktlqitnt
      121 vkavadndef ekqrtaaiae vaksketktf gggggssrsn lsvsaggnrn relfqkekit
      181 kpegknegvy relvdekalk hitemgfskd aarqalmdns nsleaalnfl lnstkqkpiq
      241 gppprgkgkg rgrtrpedee dlgnarpsap stlfdflesk mgtltveepk lqfqpphqvq
      301 hkvmnteqng ikenhsrhis rndmrqprne kpprfqrdiq nsrqtlesgg lprnrgperh
      361 sslehwtdek nksdkhyprn drpkdlsypi athpsditfk krdngmqsrv gkgvsftefk
      421 ensaaqdntd nnnqkrgkre nqihnsenfc drkartisnd afmvkseqhf avndyqnpgr
      481 tenfnavpng daehfqkgrr vgpikssgpt tipsfddkml yyntgpkrrs gpikpekile
      541 psihmeygkn wrpgdecfal ywednkfyra eiealhssgt tavvkfcdyg nyeevllsni
      601 rpvhadtwee eeetyeqtle frrggdgqpr rstrptqqfy qpprarn
//
LOCUS       XP_053925587             501 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium-coupled neutral amino acid symporter 2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053925587
VERSION     XP_053925587.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069612.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..501
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..501
                     /product="sodium-coupled neutral amino acid symporter 2
                     isoform X1"
                     /calculated_mol_wt=55562
     Region          70..492
                     /region_name="SLC5-6-like_sbd"
                     /note="Solute carrier families 5 and 6-like; solute
                     binding domain; cl00456"
                     /db_xref="CDD:444915"
     CDS             1..501
                     /gene="SLC38A2"
                     /coded_by="XM_054069612.1:321..1826"
                     /db_xref="GeneID:104062414"
ORIGIN      
        1 mssaemgkfn ispdedsssy ssnsndfsyp yptkpaamks hyadidpenq nflldsnlgk
       61 kkyetqyhpg ttsfgmsvfn lsnaivgsgi lglsyamant gialfvilll fvsivslysv
      121 hlllktaneg gsllyeqlgm kafgmagkla asgsitmqni gamssylfiv kyelplvikt
      181 fmnveettge wylngdylvl lvsvvlilpl sllknlgylg ytsgfsllcm vfflivviwk
      241 mfqipcpmds dimnvtanvt llaplvheni tsddickpky fifnsqtvya vpiltfsfvc
      301 hpailpiyee lksrsrkrmm svsyvsffam flmyllaalf gyltfygnve pellhtysay
      361 lgddillliv rlavlmavtl tvpvvifpir ssitqllwag kefrwwrhcs itvallaftn
      421 vlvifvptir difgfigasa aamlifilps afyiklvkke pmksvqkiga affflsgilv
      481 mtgcmtliil dwthnvpsdg h
//
LOCUS       XP_053925597             396 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium-coupled neutral amino acid symporter 2 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053925597
VERSION     XP_053925597.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069622.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..396
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..396
                     /product="sodium-coupled neutral amino acid symporter 2
                     isoform X2"
                     /calculated_mol_wt=44229
     Region          2..355
                     /region_name="SLC5-6-like_sbd"
                     /note="Solute carrier families 5 and 6-like; solute
                     binding domain; cl00456"
                     /db_xref="CDD:444915"
     CDS             1..396
                     /gene="SLC38A2"
                     /coded_by="XM_054069622.1:282..1472"
                     /db_xref="GeneID:104062414"
ORIGIN      
        1 milllfvsiv slysvhlllk taneggslly eqlgmkafgm agklaasgsi tmqnigamss
       61 ylfivkyelp lviktfmnve ettgewylng dylvllvsvv lilplsllkn lgylgytsgf
      121 sllcmvffli vviwkmfqip cpmdsdimnv tanvtllapl vhenitsddi ckpkyfifns
      181 qtvyavpilt fsfvchpail piyeelksrs rkrmmsvsyv sffamflmyl laalfgyltf
      241 ygnvepellh tysaylgddi lllivrlavl mavtltvpvv ifpirssitq llwagkefrw
      301 wrhcsitval laftnvlvif vptirdifgf igasaaamli filpsafyik lvkkepmksv
      361 qkigaafffl sgilvmtgcm tliildwthn vpsdgh
//
LOCUS       XP_053925606             396 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium-coupled neutral amino acid symporter 2 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053925606
VERSION     XP_053925606.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069631.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..396
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..396
                     /product="sodium-coupled neutral amino acid symporter 2
                     isoform X2"
                     /calculated_mol_wt=44229
     Region          2..355
                     /region_name="SLC5-6-like_sbd"
                     /note="Solute carrier families 5 and 6-like; solute
                     binding domain; cl00456"
                     /db_xref="CDD:444915"
     CDS             1..396
                     /gene="SLC38A2"
                     /coded_by="XM_054069631.1:258..1448"
                     /db_xref="GeneID:104062414"
ORIGIN      
        1 milllfvsiv slysvhlllk taneggslly eqlgmkafgm agklaasgsi tmqnigamss
       61 ylfivkyelp lviktfmnve ettgewylng dylvllvsvv lilplsllkn lgylgytsgf
      121 sllcmvffli vviwkmfqip cpmdsdimnv tanvtllapl vhenitsddi ckpkyfifns
      181 qtvyavpilt fsfvchpail piyeelksrs rkrmmsvsyv sffamflmyl laalfgyltf
      241 ygnvepellh tysaylgddi lllivrlavl mavtltvpvv ifpirssitq llwagkefrw
      301 wrhcsitval laftnvlvif vptirdifgf igasaaamli filpsafyik lvkkepmksv
      361 qkigaafffl sgilvmtgcm tliildwthn vpsdgh
//
LOCUS       XP_053925619            2258 aa            linear   VRT 09-MAR-2023
DEFINITION  unconventional myosin-VIIa isoform X1 [Cuculus canorus].
ACCESSION   XP_053925619
VERSION     XP_053925619.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069644.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2258
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2258
                     /product="unconventional myosin-VIIa isoform X1"
                     /calculated_mol_wt=259387
     Region          79..754
                     /region_name="MYSc_Myo7"
                     /note="class VII myosin, motor domain; cd01381"
                     /db_xref="CDD:276832"
     Site            order(112..120,164..171,208..218,443..448)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:276832"
     Site            112..120
                     /site_type="other"
                     /note="purine-binding loop"
                     /db_xref="CDD:276832"
     Site            164..171
                     /site_type="other"
                     /note="P-loop"
                     /db_xref="CDD:276832"
     Site            208..218
                     /site_type="other"
                     /note="switch I region"
                     /db_xref="CDD:276832"
     Site            443..448
                     /site_type="other"
                     /note="switch II region"
                     /db_xref="CDD:276832"
     Site            472..495
                     /site_type="other"
                     /note="relay loop"
                     /db_xref="CDD:276832"
     Site            685..694
                     /site_type="other"
                     /note="SH1 helix"
                     /db_xref="CDD:276832"
     Site            order(697..722,742..754)
                     /site_type="other"
                     /note="converter subdomain"
                     /db_xref="CDD:276832"
     Region          791..812
                     /region_name="IQ"
                     /note="Calmodulin-binding motif; smart00015"
                     /db_xref="CDD:197470"
     Region          <793..>834
                     /region_name="CBD_MYO6-like"
                     /note="calmodulin binding domain found in unconventional
                     myosin-VI and similar proteins; cd21759"
                     /db_xref="CDD:409646"
     Site            799..809
                     /site_type="other"
                     /note="IQ motif"
                     /db_xref="CDD:409646"
     Region          <873..>1003
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          <1226..1334
                     /region_name="MyTH4"
                     /note="Domain in Myosin and Kinesin Tails; smart00139"
                     /db_xref="CDD:214535"
     Region          1338..1436
                     /region_name="FERM1_F1_Myosin-VII"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain 1, F1 sub-domain, found in Myosin-VIIa,
                     Myosin-VIIb, and similar proteins; cd17092"
                     /db_xref="CDD:340612"
     Region          1340..1555
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Site            order(1388..1393,1398,1406,1428)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:340612"
     Region          1549..1647
                     /region_name="FERM_C1_MyoVII"
                     /note="FERM domain C-lobe, repeat 1, of Myosin VII
                     (MyoVII/Myo7); cd13198"
                     /db_xref="CDD:270019"
     Site            order(1549..1550,1554,1556,1571,1586)
                     /site_type="other"
                     /note="CEN1 peptide binding site [polypeptide binding]"
                     /db_xref="CDD:270019"
     Site            order(1559,1581,1583,1590)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:270019"
     Site            1634..1645
                     /site_type="other"
                     /note="putative actin binding site 2 [polypeptide
                     binding]"
                     /db_xref="CDD:270019"
     Region          1648..1712
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(1655,1657,1660,1667,1690..1691,1706,1708..1709)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212814"
     Region          1790..1939
                     /region_name="MyTH4"
                     /note="Domain in Myosin and Kinesin Tails; smart00139"
                     /db_xref="CDD:214535"
     Region          1944..2041
                     /region_name="FERM2_F1_Myosin-VII"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain 2, F1 sub-domain, found in Myosin-VIIa,
                     Myosin-VIIb, and similar proteins; cd17093"
                     /db_xref="CDD:340613"
     Region          1946..2158
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Region          2154..2249
                     /region_name="FERM_C2_MyoVII"
                     /note="FERM domain C-lobe, repeat 2, of Myosin VII
                     (MyoVII, Myo7); cd13199"
                     /db_xref="CDD:270020"
     Site            order(2162,2183,2185,2191)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:270020"
     Site            order(2195,2199..2202,2237,2241,2244..2245)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270020"
     Site            2237..2248
                     /site_type="other"
                     /note="putative actin binding site 2 [polypeptide
                     binding]"
                     /db_xref="CDD:270020"
     CDS             1..2258
                     /gene="MYO7A"
                     /coded_by="XM_054069644.1:143..6919"
                     /db_xref="GeneID:104064136"
ORIGIN      
        1 mvilrqgdyv wmdlktgref dvpigavvkl cdsgqiqvvd degnehwisp qnashikpmh
       61 ptsihgvedm irlgdlneag ilrnlliryr ehliytncgg rtytgsilva vnpyqllpiy
      121 speqirlytn kkigempphi faiadncyfn mqrnnkdqcc iisgesgagk testklilqf
      181 laaisgqhsw ieqqvleanp ileafgnakt irndnssrfg kyidihfnkr gaiegakieq
      241 ylleksrvcr qaqdernyhv fycmlkgmtm eqkkklglgk atdynylamg ncttcdgrdd
      301 skeyanirsa mkvlmftdte nweiskllaa ilhmgnlqye artydnldac evvqsaslit
      361 aasllevdsq dvmncltsrt iitrgetvst plsmeqaldv rdafvkgiyg rlfvwiveki
      421 naaiyrppsq elksvrrsig lldifgfenf tvnsfeqlci nfanenlqqf fvrhvfkleq
      481 eeynleninw qhieftdnqd aldmiaikpm niislidees kfpkgtdatm lnklnsqhkl
      541 ntnyippknn yetqfginhf agivyyetkg fleknrdtlh gdiiqlvhss knkfikqifq
      601 advamflcgy asstfgqspt ptpkgaetrk rsptlssqfk rslellmrtl svcqpffvrc
      661 ikpneykkpm lfdrelcvrq lrysgmmeti rirragypir ytfvefvdry rvlmpgvkpa
      721 ykqgdlrgtc qriaeavlgk dddwqigktk iflkdhhdml leierdkait dkviliqkvv
      781 rgfkdrsnfl kmrnsvlmiq rywrghncrk nygamrigfl rlqalyrsrk lhkqyhmarr
      841 riiefqarcr gylvrrafrh rlwavltvqa yargmiarrl ykrlrgeyhr rleaeklrla
      901 eeerlrkems akkakeeaek khqvrlaqla redaerevke keearrkkel lekmekarne
      961 pvndsemvdk mfgflgttss lpgqegqapn gfedlervqk eleeedldaa lplpeeeeed
     1021 lseykfakfa atyfqgttth tyirrplkqp llyhedegdq laalavwiti lrfmgdlpep
     1081 kyhtamsdgg ekipvmtkiy etlgkktykk elqalqgege sthidghkkn svrhklvslt
     1141 lkkkskltee vrgdawppgs tsavglsaal sdslllfprq hrtspplgla lpvslperfk
     1201 eclrgkvtkr lhdgestlqg nsmledrpts nleklhfiig ngilrpalrd eiycqickql
     1261 tqnpskssha rgwilmslcv gcfapsekfv kylrnfingg ppgyapycee rlrrtfangt
     1321 rtqppswlel qatkskkpim lpvtfmdgtt ktlltdsatt akelcnslad kislkdrfgf
     1381 slyialfdkv sslgsgndhv mdavsqceqy akeqgaqern apwrlffrke iftpwhnpse
     1441 dnvatnliyq qivrgvkfge yrcdkeedla elasqqyyvd ygsemvlerl lnlipsyipd
     1501 reitasktve kwaqliiaah kkgiytqkrt dpkkvkeevv dfarfkwpll fsrfyeafkf
     1561 sgpslpkndv ivavnwtgvy fvdeqeqvll elsfpeitav sssrggklqg qsftlatikg
     1621 deytftsnna edirdlvvtf leglrkrsky vvtlqdnpnp vgeesgflsf lkgdlivldq
     1681 dtgeqvmnsg wangfnertk qrgdfptdsv yvlptvtmpp leivalvtmt pdqrqdvirt
     1741 sqlaisdsee rvkpytleef sydyfrpppk htlsrvmitk srgkdklwcy trepikqpll
     1801 kkilgseels qeacmafiav lkymgdypsk rtrsvneltd qifegalkae plkdeiycqt
     1861 lkqltdnhik yseekgwell wlctglfpps nillphvqrf lqsrkhhpla adciqrlqka
     1921 lrngsrkypp hlveveaiqh kttqifhkvy fpddtdeafe vesstkakdf cqnisnrlll
     1981 kssegfslfv kisdkvisvp egdfffdfvr hltdwikkar pakdgivpsl tyqvffmkkl
     2041 wtnttpgkds madsifhyyq elpkylrgyh kctreevlql aaliyrvkfe ddksyfpsip
     2101 kllkelvpqd lvrqlspddw krsivayynk hagktreeak laflkiifkw ptfgsaffev
     2161 kqttepnype illiainkhg vslidpktkd ilithpftki snwssgntyf hitignlvrg
     2221 skllcetslg ykmddlltsy isqmltamsk qrsakgsk
//
LOCUS       XP_053925630            2202 aa            linear   VRT 09-MAR-2023
DEFINITION  unconventional myosin-VIIa isoform X2 [Cuculus canorus].
ACCESSION   XP_053925630
VERSION     XP_053925630.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069655.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2202
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2202
                     /product="unconventional myosin-VIIa isoform X2"
                     /calculated_mol_wt=253451
     Region          79..754
                     /region_name="MYSc_Myo7"
                     /note="class VII myosin, motor domain; cd01381"
                     /db_xref="CDD:276832"
     Site            order(112..120,164..171,208..218,443..448)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:276832"
     Site            112..120
                     /site_type="other"
                     /note="purine-binding loop"
                     /db_xref="CDD:276832"
     Site            164..171
                     /site_type="other"
                     /note="P-loop"
                     /db_xref="CDD:276832"
     Site            208..218
                     /site_type="other"
                     /note="switch I region"
                     /db_xref="CDD:276832"
     Site            443..448
                     /site_type="other"
                     /note="switch II region"
                     /db_xref="CDD:276832"
     Site            472..495
                     /site_type="other"
                     /note="relay loop"
                     /db_xref="CDD:276832"
     Site            685..694
                     /site_type="other"
                     /note="SH1 helix"
                     /db_xref="CDD:276832"
     Site            order(697..722,742..754)
                     /site_type="other"
                     /note="converter subdomain"
                     /db_xref="CDD:276832"
     Region          791..812
                     /region_name="IQ"
                     /note="Calmodulin-binding motif; smart00015"
                     /db_xref="CDD:197470"
     Region          <793..>834
                     /region_name="CBD_MYO6-like"
                     /note="calmodulin binding domain found in unconventional
                     myosin-VI and similar proteins; cd21759"
                     /db_xref="CDD:409646"
     Site            799..809
                     /site_type="other"
                     /note="IQ motif"
                     /db_xref="CDD:409646"
     Region          <873..>1003
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          1042..1278
                     /region_name="MyTH4"
                     /note="Domain in Myosin and Kinesin Tails; smart00139"
                     /db_xref="CDD:214535"
     Region          1282..1380
                     /region_name="FERM1_F1_Myosin-VII"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain 1, F1 sub-domain, found in Myosin-VIIa,
                     Myosin-VIIb, and similar proteins; cd17092"
                     /db_xref="CDD:340612"
     Region          1284..1499
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Site            order(1332..1337,1342,1350,1372)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:340612"
     Region          1493..1591
                     /region_name="FERM_C1_MyoVII"
                     /note="FERM domain C-lobe, repeat 1, of Myosin VII
                     (MyoVII/Myo7); cd13198"
                     /db_xref="CDD:270019"
     Site            order(1493..1494,1498,1500,1515,1530)
                     /site_type="other"
                     /note="CEN1 peptide binding site [polypeptide binding]"
                     /db_xref="CDD:270019"
     Site            order(1503,1525,1527,1534)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:270019"
     Site            1578..1589
                     /site_type="other"
                     /note="putative actin binding site 2 [polypeptide
                     binding]"
                     /db_xref="CDD:270019"
     Region          1592..1656
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(1599,1601,1604,1611,1634..1635,1650,1652..1653)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212814"
     Region          1734..1883
                     /region_name="MyTH4"
                     /note="Domain in Myosin and Kinesin Tails; smart00139"
                     /db_xref="CDD:214535"
     Region          1888..1985
                     /region_name="FERM2_F1_Myosin-VII"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain 2, F1 sub-domain, found in Myosin-VIIa,
                     Myosin-VIIb, and similar proteins; cd17093"
                     /db_xref="CDD:340613"
     Region          1890..2102
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Region          2098..2193
                     /region_name="FERM_C2_MyoVII"
                     /note="FERM domain C-lobe, repeat 2, of Myosin VII
                     (MyoVII, Myo7); cd13199"
                     /db_xref="CDD:270020"
     Site            order(2106,2127,2129,2135)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:270020"
     Site            order(2139,2143..2146,2181,2185,2188..2189)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270020"
     Site            2181..2192
                     /site_type="other"
                     /note="putative actin binding site 2 [polypeptide
                     binding]"
                     /db_xref="CDD:270020"
     CDS             1..2202
                     /gene="MYO7A"
                     /coded_by="XM_054069655.1:143..6751"
                     /db_xref="GeneID:104064136"
ORIGIN      
        1 mvilrqgdyv wmdlktgref dvpigavvkl cdsgqiqvvd degnehwisp qnashikpmh
       61 ptsihgvedm irlgdlneag ilrnlliryr ehliytncgg rtytgsilva vnpyqllpiy
      121 speqirlytn kkigempphi faiadncyfn mqrnnkdqcc iisgesgagk testklilqf
      181 laaisgqhsw ieqqvleanp ileafgnakt irndnssrfg kyidihfnkr gaiegakieq
      241 ylleksrvcr qaqdernyhv fycmlkgmtm eqkkklglgk atdynylamg ncttcdgrdd
      301 skeyanirsa mkvlmftdte nweiskllaa ilhmgnlqye artydnldac evvqsaslit
      361 aasllevdsq dvmncltsrt iitrgetvst plsmeqaldv rdafvkgiyg rlfvwiveki
      421 naaiyrppsq elksvrrsig lldifgfenf tvnsfeqlci nfanenlqqf fvrhvfkleq
      481 eeynleninw qhieftdnqd aldmiaikpm niislidees kfpkgtdatm lnklnsqhkl
      541 ntnyippknn yetqfginhf agivyyetkg fleknrdtlh gdiiqlvhss knkfikqifq
      601 advamflcgy asstfgqspt ptpkgaetrk rsptlssqfk rslellmrtl svcqpffvrc
      661 ikpneykkpm lfdrelcvrq lrysgmmeti rirragypir ytfvefvdry rvlmpgvkpa
      721 ykqgdlrgtc qriaeavlgk dddwqigktk iflkdhhdml leierdkait dkviliqkvv
      781 rgfkdrsnfl kmrnsvlmiq rywrghncrk nygamrigfl rlqalyrsrk lhkqyhmarr
      841 riiefqarcr gylvrrafrh rlwavltvqa yargmiarrl ykrlrgeyhr rleaeklrla
      901 eeerlrkems akkakeeaek khqvrlaqla redaerevke keearrkkel lekmekarne
      961 pvndsemvdk mfgflgttss lpgqegqapn gfedlervqk eleeedldaa lplpeeeeed
     1021 lseykfakfa atyfqgttth tyirrplkqp llyhedegdq laalavwiti lrfmgdlpep
     1081 kyhtamsdgg ekipvmtkiy etlgkktykk elqalqgege sthidghkkn svrhklvslt
     1141 lkkkskltee vtkrlhdges tlqgnsmled rptsnleklh fiigngilrp alrdeiycqi
     1201 ckqltqnpsk sshargwilm slcvgcfaps ekfvkylrnf inggppgyap yceerlrrtf
     1261 angtrtqpps wlelqatksk kpimlpvtfm dgttktlltd sattakelcn sladkislkd
     1321 rfgfslyial fdkvsslgsg ndhvmdavsq ceqyakeqga qernapwrlf frkeiftpwh
     1381 npsednvatn liyqqivrgv kfgeyrcdke edlaelasqq yyvdygsemv lerllnlips
     1441 yipdreitas ktvekwaqli iaahkkgiyt qkrtdpkkvk eevvdfarfk wpllfsrfye
     1501 afkfsgpslp kndvivavnw tgvyfvdeqe qvllelsfpe itavsssrgg klqgqsftla
     1561 tikgdeytft snnaedirdl vvtfleglrk rskyvvtlqd npnpvgeesg flsflkgdli
     1621 vldqdtgeqv mnsgwangfn ertkqrgdfp tdsvyvlptv tmppleival vtmtpdqrqd
     1681 virtsqlais dseervkpyt leefsydyfr pppkhtlsrv mitksrgkdk lwcytrepik
     1741 qpllkkilgs eelsqeacma fiavlkymgd ypskrtrsvn eltdqifega lkaeplkdei
     1801 ycqtlkqltd nhikyseekg wellwlctgl fppsnillph vqrflqsrkh hplaadciqr
     1861 lqkalrngsr kypphlveve aiqhkttqif hkvyfpddtd eafevesstk akdfcqnisn
     1921 rlllkssegf slfvkisdkv isvpegdfff dfvrhltdwi kkarpakdgi vpsltyqvff
     1981 mkklwtnttp gkdsmadsif hyyqelpkyl rgyhkctree vlqlaaliyr vkfeddksyf
     2041 psipkllkel vpqdlvrqls pddwkrsiva yynkhagktr eeaklaflki ifkwptfgsa
     2101 ffevkqttep nypeilliai nkhgvslidp ktkdilithp ftkisnwssg ntyfhitign
     2161 lvrgskllce tslgykmddl ltsyisqmlt amskqrsakg sk
//
LOCUS       XP_053925641            2183 aa            linear   VRT 09-MAR-2023
DEFINITION  unconventional myosin-VIIa isoform X3 [Cuculus canorus].
ACCESSION   XP_053925641
VERSION     XP_053925641.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069666.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2183
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2183
                     /product="unconventional myosin-VIIa isoform X3"
                     /calculated_mol_wt=251480
     Region          79..735
                     /region_name="MYSc_Myo7"
                     /note="class VII myosin, motor domain; cd01381"
                     /db_xref="CDD:276832"
     Site            order(112..120,164..171,208..218,443..448)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:276832"
     Site            112..120
                     /site_type="other"
                     /note="purine-binding loop"
                     /db_xref="CDD:276832"
     Site            164..171
                     /site_type="other"
                     /note="P-loop"
                     /db_xref="CDD:276832"
     Site            208..218
                     /site_type="other"
                     /note="switch I region"
                     /db_xref="CDD:276832"
     Site            443..448
                     /site_type="other"
                     /note="switch II region"
                     /db_xref="CDD:276832"
     Site            472..495
                     /site_type="other"
                     /note="relay loop"
                     /db_xref="CDD:276832"
     Site            666..675
                     /site_type="other"
                     /note="SH1 helix"
                     /db_xref="CDD:276832"
     Site            order(678..703,723..735)
                     /site_type="other"
                     /note="converter subdomain"
                     /db_xref="CDD:276832"
     Region          772..793
                     /region_name="IQ"
                     /note="Calmodulin-binding motif; smart00015"
                     /db_xref="CDD:197470"
     Region          <854..>984
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          1023..1259
                     /region_name="MyTH4"
                     /note="Domain in Myosin and Kinesin Tails; smart00139"
                     /db_xref="CDD:214535"
     Region          1263..1361
                     /region_name="FERM1_F1_Myosin-VII"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain 1, F1 sub-domain, found in Myosin-VIIa,
                     Myosin-VIIb, and similar proteins; cd17092"
                     /db_xref="CDD:340612"
     Region          1265..1480
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Site            order(1313..1318,1323,1331,1353)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:340612"
     Region          1474..1572
                     /region_name="FERM_C1_MyoVII"
                     /note="FERM domain C-lobe, repeat 1, of Myosin VII
                     (MyoVII/Myo7); cd13198"
                     /db_xref="CDD:270019"
     Site            order(1474..1475,1479,1481,1496,1511)
                     /site_type="other"
                     /note="CEN1 peptide binding site [polypeptide binding]"
                     /db_xref="CDD:270019"
     Site            order(1484,1506,1508,1515)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:270019"
     Site            1559..1570
                     /site_type="other"
                     /note="putative actin binding site 2 [polypeptide
                     binding]"
                     /db_xref="CDD:270019"
     Region          1573..1637
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(1580,1582,1585,1592,1615..1616,1631,1633..1634)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212814"
     Region          1715..1864
                     /region_name="MyTH4"
                     /note="Domain in Myosin and Kinesin Tails; smart00139"
                     /db_xref="CDD:214535"
     Region          1869..1966
                     /region_name="FERM2_F1_Myosin-VII"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain 2, F1 sub-domain, found in Myosin-VIIa,
                     Myosin-VIIb, and similar proteins; cd17093"
                     /db_xref="CDD:340613"
     Region          1871..2083
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Region          2079..2174
                     /region_name="FERM_C2_MyoVII"
                     /note="FERM domain C-lobe, repeat 2, of Myosin VII
                     (MyoVII, Myo7); cd13199"
                     /db_xref="CDD:270020"
     Site            order(2087,2108,2110,2116)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:270020"
     Site            order(2120,2124..2127,2162,2166,2169..2170)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270020"
     Site            2162..2173
                     /site_type="other"
                     /note="putative actin binding site 2 [polypeptide
                     binding]"
                     /db_xref="CDD:270020"
     CDS             1..2183
                     /gene="MYO7A"
                     /coded_by="XM_054069666.1:143..6694"
                     /db_xref="GeneID:104064136"
ORIGIN      
        1 mvilrqgdyv wmdlktgref dvpigavvkl cdsgqiqvvd degnehwisp qnashikpmh
       61 ptsihgvedm irlgdlneag ilrnlliryr ehliytncgg rtytgsilva vnpyqllpiy
      121 speqirlytn kkigempphi faiadncyfn mqrnnkdqcc iisgesgagk testklilqf
      181 laaisgqhsw ieqqvleanp ileafgnakt irndnssrfg kyidihfnkr gaiegakieq
      241 ylleksrvcr qaqdernyhv fycmlkgmtm eqkkklglgk atdynylamg ncttcdgrdd
      301 skeyanirsa mkvlmftdte nweiskllaa ilhmgnlqye artydnldac evvqsaslit
      361 aasllevdsq dvmncltsrt iitrgetvst plsmeqaldv rdafvkgiyg rlfvwiveki
      421 naaiyrppsq elksvrrsig lldifgfenf tvnsfeqlci nfanenlqqf fvrhvfkleq
      481 eeynleninw qhieftdnqd aldmiaikpm niislidees kfpkgtdatm lnklnsqhkl
      541 ntnyippknn yetqfginhf agivyyetkg fleknrdtlh gdiiqlvhss knkfikqifq
      601 advamgaetr krsptlssqf krslellmrt lsvcqpffvr cikpneykkp mlfdrelcvr
      661 qlrysgmmet irirragypi rytfvefvdr yrvlmpgvkp aykqgdlrgt cqriaeavlg
      721 kdddwqigkt kiflkdhhdm lleierdkai tdkviliqkv vrgfkdrsnf lkmrnsvlmi
      781 qrywrghncr knygamrigf lrlqalyrsr klhkqyhmar rriiefqarc rgylvrrafr
      841 hrlwavltvq ayargmiarr lykrlrgeyh rrleaeklrl aeeerlrkem sakkakeeae
      901 kkhqvrlaql aredaerevk ekeearrkke llekmekarn epvndsemvd kmfgflgtts
      961 slpgqegqap ngfedlervq keleeedlda alplpeeeee dlseykfakf aatyfqgttt
     1021 htyirrplkq pllyhedegd qlaalavwit ilrfmgdlpe pkyhtamsdg gekipvmtki
     1081 yetlgkktyk kelqalqgeg esthidghkk nsvrhklvsl tlkkksklte evtkrlhdge
     1141 stlqgnsmle drptsnlekl hfiigngilr palrdeiycq ickqltqnps ksshargwil
     1201 mslcvgcfap sekfvkylrn finggppgya pyceerlrrt fangtrtqpp swlelqatks
     1261 kkpimlpvtf mdgttktllt dsattakelc nsladkislk drfgfslyia lfdkvsslgs
     1321 gndhvmdavs qceqyakeqg aqernapwrl ffrkeiftpw hnpsednvat nliyqqivrg
     1381 vkfgeyrcdk eedlaelasq qyyvdygsem vlerllnlip syipdreita sktvekwaql
     1441 iiaahkkgiy tqkrtdpkkv keevvdfarf kwpllfsrfy eafkfsgpsl pkndvivavn
     1501 wtgvyfvdeq eqvllelsfp eitavsssrg gklqgqsftl atikgdeytf tsnnaedird
     1561 lvvtfleglr krskyvvtlq dnpnpvgees gflsflkgdl ivldqdtgeq vmnsgwangf
     1621 nertkqrgdf ptdsvyvlpt vtmppleiva lvtmtpdqrq dvirtsqlai sdseervkpy
     1681 tleefsydyf rpppkhtlsr vmitksrgkd klwcytrepi kqpllkkilg seelsqeacm
     1741 afiavlkymg dypskrtrsv neltdqifeg alkaeplkde iycqtlkqlt dnhikyseek
     1801 gwellwlctg lfppsnillp hvqrflqsrk hhplaadciq rlqkalrngs rkypphlvev
     1861 eaiqhkttqi fhkvyfpddt deafevesst kakdfcqnis nrlllksseg fslfvkisdk
     1921 visvpegdff fdfvrhltdw ikkarpakdg ivpsltyqvf fmkklwtntt pgkdsmadsi
     1981 fhyyqelpky lrgyhkctre evlqlaaliy rvkfeddksy fpsipkllke lvpqdlvrql
     2041 spddwkrsiv ayynkhagkt reeaklaflk iifkwptfgs affevkqtte pnypeillia
     2101 inkhgvslid pktkdilith pftkisnwss gntyfhitig nlvrgskllc etslgykmdd
     2161 lltsyisqml tamskqrsak gsk
//
LOCUS       XP_053925652            2177 aa            linear   VRT 09-MAR-2023
DEFINITION  unconventional myosin-VIIa isoform X4 [Cuculus canorus].
ACCESSION   XP_053925652
VERSION     XP_053925652.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069677.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2177
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2177
                     /product="unconventional myosin-VIIa isoform X4"
                     /calculated_mol_wt=250891
     Region          79..729
                     /region_name="MYSc_Myo7"
                     /note="class VII myosin, motor domain; cd01381"
                     /db_xref="CDD:276832"
     Site            order(106..114,158..165,202..212,437..442)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:276832"
     Site            106..114
                     /site_type="other"
                     /note="purine-binding loop"
                     /db_xref="CDD:276832"
     Site            158..165
                     /site_type="other"
                     /note="P-loop"
                     /db_xref="CDD:276832"
     Site            202..212
                     /site_type="other"
                     /note="switch I region"
                     /db_xref="CDD:276832"
     Site            437..442
                     /site_type="other"
                     /note="switch II region"
                     /db_xref="CDD:276832"
     Site            466..489
                     /site_type="other"
                     /note="relay loop"
                     /db_xref="CDD:276832"
     Site            660..669
                     /site_type="other"
                     /note="SH1 helix"
                     /db_xref="CDD:276832"
     Site            order(672..697,717..729)
                     /site_type="other"
                     /note="converter subdomain"
                     /db_xref="CDD:276832"
     Region          766..787
                     /region_name="IQ"
                     /note="Calmodulin-binding motif; smart00015"
                     /db_xref="CDD:197470"
     Region          <848..>978
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          1017..1253
                     /region_name="MyTH4"
                     /note="Domain in Myosin and Kinesin Tails; smart00139"
                     /db_xref="CDD:214535"
     Region          1257..1355
                     /region_name="FERM1_F1_Myosin-VII"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain 1, F1 sub-domain, found in Myosin-VIIa,
                     Myosin-VIIb, and similar proteins; cd17092"
                     /db_xref="CDD:340612"
     Region          1259..1474
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Site            order(1307..1312,1317,1325,1347)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:340612"
     Region          1468..1566
                     /region_name="FERM_C1_MyoVII"
                     /note="FERM domain C-lobe, repeat 1, of Myosin VII
                     (MyoVII/Myo7); cd13198"
                     /db_xref="CDD:270019"
     Site            order(1468..1469,1473,1475,1490,1505)
                     /site_type="other"
                     /note="CEN1 peptide binding site [polypeptide binding]"
                     /db_xref="CDD:270019"
     Site            order(1478,1500,1502,1509)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:270019"
     Site            1553..1564
                     /site_type="other"
                     /note="putative actin binding site 2 [polypeptide
                     binding]"
                     /db_xref="CDD:270019"
     Region          1567..1631
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(1574,1576,1579,1586,1609..1610,1625,1627..1628)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212814"
     Region          1709..1858
                     /region_name="MyTH4"
                     /note="Domain in Myosin and Kinesin Tails; smart00139"
                     /db_xref="CDD:214535"
     Region          1863..1960
                     /region_name="FERM2_F1_Myosin-VII"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain 2, F1 sub-domain, found in Myosin-VIIa,
                     Myosin-VIIb, and similar proteins; cd17093"
                     /db_xref="CDD:340613"
     Region          1865..2077
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Region          2073..2168
                     /region_name="FERM_C2_MyoVII"
                     /note="FERM domain C-lobe, repeat 2, of Myosin VII
                     (MyoVII, Myo7); cd13199"
                     /db_xref="CDD:270020"
     Site            order(2081,2102,2104,2110)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:270020"
     Site            order(2114,2118..2121,2156,2160,2163..2164)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270020"
     Site            2156..2167
                     /site_type="other"
                     /note="putative actin binding site 2 [polypeptide
                     binding]"
                     /db_xref="CDD:270020"
     CDS             1..2177
                     /gene="MYO7A"
                     /coded_by="XM_054069677.1:143..6676"
                     /db_xref="GeneID:104064136"
ORIGIN      
        1 mvilrqgdyv wmdlktgref dvpigavvkl cdsgqiqvvd degnehwisp qnashikpmh
       61 ptsihgvedm irlgdlneag ilrnlliryr ehliytytgs ilvavnpyql lpiyspeqir
      121 lytnkkigem pphifaiadn cyfnmqrnnk dqcciisges gagktestkl ilqflaaisg
      181 qhswieqqvl eanpileafg naktirndns srfgkyidih fnkrgaiega kieqylleks
      241 rvcrqaqder nyhvfycmlk gmtmeqkkkl glgkatdyny lamgncttcd grddskeyan
      301 irsamkvlmf tdtenweisk llaailhmgn lqyeartydn ldacevvqsa slitaaslle
      361 vdsqdvmncl tsrtiitrge tvstplsmeq aldvrdafvk giygrlfvwi vekinaaiyr
      421 ppsqelksvr rsiglldifg fenftvnsfe qlcinfanen lqqffvrhvf kleqeeynle
      481 ninwqhieft dnqdaldmia ikpmniisli deeskfpkgt datmlnklns qhklntnyip
      541 pknnyetqfg inhfagivyy etkgfleknr dtlhgdiiql vhssknkfik qifqadvamg
      601 aetrkrsptl ssqfkrslel lmrtlsvcqp ffvrcikpne ykkpmlfdre lcvrqlrysg
      661 mmetirirra gypirytfve fvdryrvlmp gvkpaykqgd lrgtcqriae avlgkdddwq
      721 igktkiflkd hhdmlleier dkaitdkvil iqkvvrgfkd rsnflkmrns vlmiqrywrg
      781 hncrknygam rigflrlqal yrsrklhkqy hmarrriief qarcrgylvr rafrhrlwav
      841 ltvqayargm iarrlykrlr geyhrrleae klrlaeeerl rkemsakkak eeaekkhqvr
      901 laqlaredae revkekeear rkkellekme karnepvnds emvdkmfgfl gttsslpgqe
      961 gqapngfedl ervqkeleee dldaalplpe eeeedlseyk fakfaatyfq gttthtyirr
     1021 plkqpllyhe degdqlaala vwitilrfmg dlpepkyhta msdggekipv mtkiyetlgk
     1081 ktykkelqal qgegesthid ghkknsvrhk lvsltlkkks klteevtkrl hdgestlqgn
     1141 smledrptsn leklhfiign gilrpalrde iycqickqlt qnpsksshar gwilmslcvg
     1201 cfapsekfvk ylrnfinggp pgyapyceer lrrtfangtr tqppswlelq atkskkpiml
     1261 pvtfmdgttk tlltdsatta kelcnsladk islkdrfgfs lyialfdkvs slgsgndhvm
     1321 davsqceqya keqgaqerna pwrlffrkei ftpwhnpsed nvatnliyqq ivrgvkfgey
     1381 rcdkeedlae lasqqyyvdy gsemvlerll nlipsyipdr eitasktvek waqliiaahk
     1441 kgiytqkrtd pkkvkeevvd farfkwpllf srfyeafkfs gpslpkndvi vavnwtgvyf
     1501 vdeqeqvlle lsfpeitavs ssrggklqgq sftlatikgd eytftsnnae dirdlvvtfl
     1561 eglrkrskyv vtlqdnpnpv geesgflsfl kgdlivldqd tgeqvmnsgw angfnertkq
     1621 rgdfptdsvy vlptvtmppl eivalvtmtp dqrqdvirts qlaisdseer vkpytleefs
     1681 ydyfrpppkh tlsrvmitks rgkdklwcyt repikqpllk kilgseelsq eacmafiavl
     1741 kymgdypskr trsvneltdq ifegalkaep lkdeiycqtl kqltdnhiky seekgwellw
     1801 lctglfppsn illphvqrfl qsrkhhplaa dciqrlqkal rngsrkypph lveveaiqhk
     1861 ttqifhkvyf pddtdeafev esstkakdfc qnisnrlllk ssegfslfvk isdkvisvpe
     1921 gdfffdfvrh ltdwikkarp akdgivpslt yqvffmkklw tnttpgkdsm adsifhyyqe
     1981 lpkylrgyhk ctreevlqla aliyrvkfed dksyfpsipk llkelvpqdl vrqlspddwk
     2041 rsivayynkh agktreeakl aflkiifkwp tfgsaffevk qttepnypei lliainkhgv
     2101 slidpktkdi lithpftkis nwssgntyfh itignlvrgs kllcetslgy kmddlltsyi
     2161 sqmltamskq rsakgsk
//
LOCUS       XP_009564812             580 aa            linear   VRT 09-MAR-2023
DEFINITION  glycerophosphodiester phosphodiesterase domain-containing protein 4
            isoform X1 [Cuculus canorus].
ACCESSION   XP_009564812
VERSION     XP_009564812.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566517.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564812.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..580
                     /product="glycerophosphodiester phosphodiesterase
                     domain-containing protein 4 isoform X1"
                     /calculated_mol_wt=66479
     Region          234..543
                     /region_name="GDPD_GDE6"
                     /note="Glycerophosphodiester phosphodiesterase domain of
                     mammalian glycerophosphodiester phosphodiesterase GDE6 and
                     similar proteins; cd08610"
                     /db_xref="CDD:176552"
     Site            order(255,282,284,297,381,418,478)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:176552"
     Site            order(255,297)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:176552"
     Site            order(282,284,381)
                     /site_type="other"
                     /note="putative metal binding site [ion binding]"
                     /db_xref="CDD:176552"
     CDS             1..580
                     /gene="GDPD4"
                     /coded_by="XM_009566517.2:148..1890"
                     /db_xref="GeneID:104064214"
ORIGIN      
        1 measstslkr lkfgklkvvr rrllqryehq pfisclagfy scrwkryqrr riepgkccck
       61 tgecvffpll vgafcfslvf lymwgeaknd ynnfdwynyg nlgfwflwsl vllivaailf
      121 myitlllvla mcllaegqql ylhwshkigt flvlcfsvta lfilsvlwgd qwktvrlsfq
      181 itapylhiga itlmvllswp valhairadk kvvqiiivgp ylaillflfl iplgmyspci
      241 revgtlgpkp alighrgapm lapentemsf qktiehggdg letdvtisyd gvpflmhdst
      301 lrrttnikev ypndtaqnaa lfswdtlkel nagtwflkdk pfscmsslsr adqtqamnqs
      361 iyklsnflrl adsqnqlvif dlyrppekhp yrnswinrtl dvilnesgir phlvlwlend
      421 mrsfvqsvap gfqqtmgska pvedllmdni vklnlpytem ssedirkyse anittnlyvi
      481 nepwlfslaw csgahsvttn tvhilknlrq plflmtpqqy nimwiltdlt svlfislifa
      541 lhwwrersfs ccahdggltl esgtynkfrt elsdipavmt
//
LOCUS       XP_053925669             560 aa            linear   VRT 09-MAR-2023
DEFINITION  glycerophosphodiester phosphodiesterase domain-containing protein 4
            isoform X2 [Cuculus canorus].
ACCESSION   XP_053925669
VERSION     XP_053925669.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069694.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..560
                     /product="glycerophosphodiester phosphodiesterase
                     domain-containing protein 4 isoform X2"
                     /calculated_mol_wt=64156
     Region          214..523
                     /region_name="GDPD_GDE6"
                     /note="Glycerophosphodiester phosphodiesterase domain of
                     mammalian glycerophosphodiester phosphodiesterase GDE6 and
                     similar proteins; cd08610"
                     /db_xref="CDD:176552"
     Site            order(235,262,264,277,361,398,458)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:176552"
     Site            order(235,277)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:176552"
     Site            order(262,264,361)
                     /site_type="other"
                     /note="putative metal binding site [ion binding]"
                     /db_xref="CDD:176552"
     CDS             1..560
                     /gene="GDPD4"
                     /coded_by="XM_054069694.1:148..1830"
                     /db_xref="GeneID:104064214"
ORIGIN      
        1 measstslkr lkfgklkvvr rrllqryehq pfisclagfy scrwkryqrr riepgkccck
       61 tgecvffpll vgafcfslvf lymwgeaknd ynnfdwynyg nlgfwflwsl vllivaailf
      121 myitllligt flvlcfsvta lfilsvlwgd qwktvrlsfq itapylhiga itlmvllswp
      181 valhairadk kvvqiiivgp ylaillflfl iplgmyspci revgtlgpkp alighrgapm
      241 lapentemsf qktiehggdg letdvtisyd gvpflmhdst lrrttnikev ypndtaqnaa
      301 lfswdtlkel nagtwflkdk pfscmsslsr adqtqamnqs iyklsnflrl adsqnqlvif
      361 dlyrppekhp yrnswinrtl dvilnesgir phlvlwlend mrsfvqsvap gfqqtmgska
      421 pvedllmdni vklnlpytem ssedirkyse anittnlyvi nepwlfslaw csgahsvttn
      481 tvhilknlrq plflmtpqqy nimwiltdlt svlfislifa lhwwrersfs ccahdggltl
      541 esgtynkfrt elsdipavmt
//
LOCUS       XP_009567267             950 aa            linear   VRT 09-MAR-2023
DEFINITION  inter-alpha-trypsin inhibitor heavy chain H2 [Cuculus canorus].
ACCESSION   XP_009567267
VERSION     XP_009567267.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568972.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567267.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..950
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..950
                     /product="inter-alpha-trypsin inhibitor heavy chain H2"
                     /calculated_mol_wt=106500
     Region          70..187
                     /region_name="VIT_2"
                     /note="Vault protein inter-alpha-trypsin domain; cl02699"
                     /db_xref="CDD:470654"
     Region          309..490
                     /region_name="vWA_interalpha_trypsin_inhibitor"
                     /note="vWA_interalpha trypsin inhibitor (ITI): ITI is a
                     glycoprotein composed of three polypeptides- two heavy
                     chains and one light chain (bikunin). Bikunin confers the
                     protease-inhibitor function while the heavy chains are
                     involved in rendering stability to...; cd01461"
                     /db_xref="CDD:238738"
     Site            order(318,320,322,388,423)
                     /site_type="other"
                     /note="metal ion-dependent adhesion site (MIDAS)"
                     /db_xref="CDD:238738"
     Region          739..925
                     /region_name="ITI_HC_C"
                     /note="Inter-alpha-trypsin inhibitor heavy chain
                     C-terminus; pfam06668"
                     /db_xref="CDD:461981"
     CDS             1..950
                     /gene="ITIH2"
                     /coded_by="XM_009568972.2:112..2964"
                     /db_xref="GeneID:104066377"
ORIGIN      
        1 mkhlicflvl flasgvesfd lvineipdev enlidletdg fpsssktrng ryqrstsdwg
       61 yvgdlveddd kiglysykvq stitsrlant miqakmvnna kkpqhivfdv qvpkgafidn
      121 ftmdingitf tsqireksea rkmysqakak gkaagivrsn aldmenfkte vnvppgmriq
      181 felhyhemir rklssyehti svkpgrlakh mevdvriiep qglryvhvpn slgdhfdgit
      241 tiskgekkah vsfkptmaqq rkcptcssta vdgnfvvqyd vnrettggel eifngyfihf
      301 fapenldplp knilfvidvs gsmwglkmkq tieamkails elraadqfsl idfnhnvrcw
      361 rdnlvsatps qvedakkyiq aihpnggtni neallratfi lneaqnlgml dpnsvsmivl
      421 vsdgdptvge lklttiqknv kqsikdqfsl fclgigfdvd ydflqriatd nrgmaqrifg
      481 nqetsaqmkn fynqvstpll kkiqfnypqe svsdvtqssf hnyfggseiv vagkvdtenl
      541 qhlesivtat aanaelvmet lrdveeldgf mkkdkyadpd ftrklwaylt vnqmmaernt
      601 aptaalkrni tksilqmsld hhivtpftam lienaekdei mladqpkdpr rgccpgtlgl
      661 tpnapnnnnn kgipawanvt avpvsympeq rsppvsslsi nrvdndphfi ihlpksqrni
      721 cfninsepgk ilnlvsdpgt gvtvngqlvg akktenkkln tyfgkigfyf knkglkveit
      781 tksitlkdgs ygitlswsdt ghiirkqlli svkkesnvti tvgeemsfmv llhrvwknhp
      841 invdflgiyi ppenqlspaa hgligqfase pevyihhqrp gqdpekpqat mevkgnkltv
      901 trglqkdyre drvlgtdvqc wfvhnsgkgf idghykdylv phlysflkkp
//
LOCUS       XP_009567255             390 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA/RNA-binding protein KIN17 isoform X1 [Cuculus canorus].
ACCESSION   XP_009567255
VERSION     XP_009567255.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568960.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..390
                     /product="DNA/RNA-binding protein KIN17 isoform X1"
                     /calculated_mol_wt=45233
     Region          55..177
                     /region_name="Kin17_mid"
                     /note="Domain of Kin17 curved DNA-binding protein;
                     pfam10357"
                     /db_xref="CDD:463057"
     Region          <106..>274
                     /region_name="Caldesmon"
                     /note="pfam02029"
                     /db_xref="CDD:460421"
     Region          273..325
                     /region_name="KN17_SH3"
                     /note="KN17 SH3-like C-terminal domain; pfam18131"
                     /db_xref="CDD:407963"
     Region          336..389
                     /region_name="KOW_KIN17"
                     /note="KOW_Kin17 is a RNA-binding motif; cd13155"
                     /db_xref="CDD:240519"
     CDS             1..390
                     /gene="KIN"
                     /coded_by="XM_009568960.2:39..1211"
                     /db_xref="GeneID:104066367"
ORIGIN      
        1 mgksdflspk aianrikskg lqklrwycqm cqkqcrdeng fkchcmsesh qrqlllasen
       61 pqqfmdyfse efrndflell rrrfgtkrvh nnivyneyis hrehihmnat qwetltdftk
      121 wlgreglckv detpkgwyiq yidrdpetir rqqeqerkkk qdlddeekta kfieqqvrrg
      181 legkevekpv ytelnrenee ekvtfnlnkg astsipassk tssvlgpnal kmvegavkrk
      241 esahssgqsk ekkkksalde imeleeekkr tarrdywlqp divvkivtkk lgekyhkkka
      301 vvkevidkyt avvkmidsgd klkldqthle tvipapgkkv mvlnggyrgn egilesinek
      361 rfsatiiids gplkgrrved ilyediskla
//
LOCUS       XP_053925690             389 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA/RNA-binding protein KIN17 isoform X2 [Cuculus canorus].
ACCESSION   XP_053925690
VERSION     XP_053925690.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069715.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..389
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..389
                     /product="DNA/RNA-binding protein KIN17 isoform X2"
                     /calculated_mol_wt=45146
     Region          55..177
                     /region_name="Kin17_mid"
                     /note="Domain of Kin17 curved DNA-binding protein;
                     pfam10357"
                     /db_xref="CDD:463057"
     Region          <106..>273
                     /region_name="Caldesmon"
                     /note="pfam02029"
                     /db_xref="CDD:460421"
     Region          272..324
                     /region_name="KN17_SH3"
                     /note="KN17 SH3-like C-terminal domain; pfam18131"
                     /db_xref="CDD:407963"
     Region          335..388
                     /region_name="KOW_KIN17"
                     /note="KOW_Kin17 is a RNA-binding motif; cd13155"
                     /db_xref="CDD:240519"
     CDS             1..389
                     /gene="KIN"
                     /coded_by="XM_054069715.1:39..1208"
                     /db_xref="GeneID:104066367"
ORIGIN      
        1 mgksdflspk aianrikskg lqklrwycqm cqkqcrdeng fkchcmsesh qrqlllasen
       61 pqqfmdyfse efrndflell rrrfgtkrvh nnivyneyis hrehihmnat qwetltdftk
      121 wlgreglckv detpkgwyiq yidrdpetir rqqeqerkkk qdlddeekta kfieqqvrrg
      181 legkevekpv ytelnrenee ekvtfnlnkg astsipassk tsvlgpnalk mvegavkrke
      241 sahssgqske kkkksaldei meleeekkrt arrdywlqpd ivvkivtkkl gekyhkkkav
      301 vkevidkyta vvkmidsgdk lkldqthlet vipapgkkvm vlnggyrgne gilesinekr
      361 fsatiiidsg plkgrrvedi lyediskla
//
LOCUS       XP_053925700            1024 aa            linear   VRT 09-MAR-2023
DEFINITION  importin-8 isoform X1 [Cuculus canorus].
ACCESSION   XP_053925700
VERSION     XP_053925700.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069725.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1024
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1024
                     /product="importin-8 isoform X1"
                     /calculated_mol_wt=117733
     Region          15..904
                     /region_name="SXM1"
                     /note="Importin, protein involved in nuclear import
                     [Posttranslational modification, protein turnover,
                     chaperones]; COG5656"
                     /db_xref="CDD:227943"
     CDS             1..1024
                     /gene="IPO8"
                     /coded_by="XM_054069725.1:144..3218"
                     /db_xref="GeneID:104056373"
ORIGIN      
        1 mdpnriiqal rgtidpklrv aaenelnqsy kiinfapsll qiivsdqvef pvrqaaaiyl
       61 knmvthywpd repppgeavf pfnihendrq qirdnivegi irspdlvraq ltmclraiik
      121 hdfpghwtav vdkigyylqs qnsgswlgsl lclyqlvkty eykkaeerdp liaamqiflp
      181 riqqqmiqll pdnshysvll qkqilkifya lvqyalplql vnnqtmtqwm eifrtiidrn
      241 vpletlqide ddrpelvwwk ckkwalhiva rlferygspg nvtkeyfefs efflktyavg
      301 iqqvllrild qyrqkdyvap rvlqqtlnyl nqgvihsvtw kqmkphiqsi teevifslmc
      361 ykdedeelwq edpyeyirmk fdvfedyast ttaaqnllyt aakkrkevlp kmmaycyqil
      421 tepnidprkk dgalhvigsl adillkksvf kdqvelmlqn hvfplfmsdl gylrarscwv
      481 lnsfsalkfh nelnlrnave lakksliddn empvkveaai alqtlishqt qakeyvkpyv
      541 rpvmqellhi irqtenedlt vvirkmifey tqevatiavd mtqhlaeifg kvlqseeyee
      601 vedktvmamg vmqtihaivd avdqhveitq qlesiclqvi glvlqkqvie fyeeilylan
      661 nltghmispq mwqllgvlye vfqqdwfeyf pdmmpllhny vtldtdtlls npkhleiiya
      721 mckkvltgda gedaechaak lleviviqck grgidqcipl fveavlerlt rgvktselrt
      781 mclqvaiaal yynpdlllht lenirfphns epitaqfinq wmndtdcflg lhdrkmciig
      841 lsilmelqnr ppavdavaaq ivpsilllfl glkqvyalre llehedhakd enhvaednee
      901 ilsdeedtne vsqamqenhg gggggggsgg gggggeeede ddddddwden vleetalegf
      961 ctpvdlengv deyqfftqal lavqsrdaaw yhsltaplse dqkkqlqeiy tlaehrqnaa
     1021 rlrq
//
LOCUS       XP_053925711             962 aa            linear   VRT 09-MAR-2023
DEFINITION  importin-8 isoform X2 [Cuculus canorus].
ACCESSION   XP_053925711
VERSION     XP_053925711.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069736.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..962
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..962
                     /product="importin-8 isoform X2"
                     /calculated_mol_wt=110741
     Region          15..842
                     /region_name="SXM1"
                     /note="Importin, protein involved in nuclear import
                     [Posttranslational modification, protein turnover,
                     chaperones]; COG5656"
                     /db_xref="CDD:227943"
     CDS             1..962
                     /gene="IPO8"
                     /coded_by="XM_054069736.1:405..3293"
                     /db_xref="GeneID:104056373"
ORIGIN      
        1 mvthywpdre pppgeavfpf nihendrqqi rdnivegiir spdlvraqlt mclraiikhd
       61 fpghwtavvd kigyylqsqn sgswlgsllc lyqlvktyey kkaeerdpli aamqiflpri
      121 qqqmiqllpd nshysvllqk qilkifyalv qyalplqlvn nqtmtqwmei frtiidrnvp
      181 letlqidedd rpelvwwkck kwalhivarl ferygspgnv tkeyfefsef flktyavgiq
      241 qvllrildqy rqkdyvaprv lqqtlnylnq gvihsvtwkq mkphiqsite evifslmcyk
      301 dedeelwqed pyeyirmkfd vfedyasttt aaqnllytaa kkrkevlpkm maycyqilte
      361 pnidprkkdg alhvigslad illkksvfkd qvelmlqnhv fplfmsdlgy lrarscwvln
      421 sfsalkfhne lnlrnavela kksliddnem pvkveaaial qtlishqtqa keyvkpyvrp
      481 vmqellhiir qtenedltvv irkmifeytq evatiavdmt qhlaeifgkv lqseeyeeve
      541 dktvmamgvm qtihaivdav dqhveitqql esiclqvigl vlqkqviefy eeilylannl
      601 tghmispqmw qllgvlyevf qqdwfeyfpd mmpllhnyvt ldtdtllsnp khleiiyamc
      661 kkvltgdage daechaakll eviviqckgr gidqciplfv eavlerltrg vktselrtmc
      721 lqvaiaalyy npdlllhtle nirfphnsep itaqfinqwm ndtdcflglh drkmciigls
      781 ilmelqnrpp avdavaaqiv psilllflgl kqvyalrell ehedhakden hvaedneeil
      841 sdeedtnevs qamqenhggg gggggsgggg gggeeededd ddddwdenvl eetalegfct
      901 pvdlengvde yqfftqalla vqsrdaawyh sltaplsedq kkqlqeiytl aehrqnaarl
      961 rq
//
LOCUS       XP_053925720            1052 aa            linear   VRT 09-MAR-2023
DEFINITION  importin-8 isoform X3 [Cuculus canorus].
ACCESSION   XP_053925720
VERSION     XP_053925720.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069745.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1052
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1052
                     /product="importin-8 isoform X3"
                     /calculated_mol_wt=120596
     Region          15..904
                     /region_name="SXM1"
                     /note="Importin, protein involved in nuclear import
                     [Posttranslational modification, protein turnover,
                     chaperones]; COG5656"
                     /db_xref="CDD:227943"
     CDS             1..1052
                     /gene="IPO8"
                     /coded_by="XM_054069745.1:145..3303"
                     /db_xref="GeneID:104056373"
ORIGIN      
        1 mdpnriiqal rgtidpklrv aaenelnqsy kiinfapsll qiivsdqvef pvrqaaaiyl
       61 knmvthywpd repppgeavf pfnihendrq qirdnivegi irspdlvraq ltmclraiik
      121 hdfpghwtav vdkigyylqs qnsgswlgsl lclyqlvkty eykkaeerdp liaamqiflp
      181 riqqqmiqll pdnshysvll qkqilkifya lvqyalplql vnnqtmtqwm eifrtiidrn
      241 vpletlqide ddrpelvwwk ckkwalhiva rlferygspg nvtkeyfefs efflktyavg
      301 iqqvllrild qyrqkdyvap rvlqqtlnyl nqgvihsvtw kqmkphiqsi teevifslmc
      361 ykdedeelwq edpyeyirmk fdvfedyast ttaaqnllyt aakkrkevlp kmmaycyqil
      421 tepnidprkk dgalhvigsl adillkksvf kdqvelmlqn hvfplfmsdl gylrarscwv
      481 lnsfsalkfh nelnlrnave lakksliddn empvkveaai alqtlishqt qakeyvkpyv
      541 rpvmqellhi irqtenedlt vvirkmifey tqevatiavd mtqhlaeifg kvlqseeyee
      601 vedktvmamg vmqtihaivd avdqhveitq qlesiclqvi glvlqkqvie fyeeilylan
      661 nltghmispq mwqllgvlye vfqqdwfeyf pdmmpllhny vtldtdtlls npkhleiiya
      721 mckkvltgda gedaechaak lleviviqck grgidqcipl fveavlerlt rgvktselrt
      781 mclqvaiaal yynpdlllht lenirfphns epitaqfinq wmndtdcflg lhdrkmciig
      841 lsilmelqnr ppavdavaaq ivpsilllfl glkqvyalre llehedhakd enhvaednee
      901 ilsdeedtne vsqamqenhg gggggggsgg gggggeeede ddddddwden vleetalegf
      961 ctpvdlengv deyqfftqal lavqsrdaaw yhsltaplse dqkkqlqeiy tlaehrqnaa
     1021 vktktieqrg ytfddkglit afnfagstpg gn
//
LOCUS       XP_053925730            1249 aa            linear   VRT 09-MAR-2023
DEFINITION  apoptotic protease-activating factor 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053925730
VERSION     XP_053925730.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069755.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1249
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1249
                     /product="apoptotic protease-activating factor 1 isoform
                     X1"
                     /calculated_mol_wt=142268
     Region          7..92
                     /region_name="CARD_APAF1"
                     /note="Caspase activation and recruitment domain similar
                     to that found in Apoptotic Protease-Activating Factor 1;
                     cd08323"
                     /db_xref="CDD:260034"
     Site            order(23..24,27..28,30..31,37,40)
                     /site_type="other"
                     /note="APAF1-Caspase9 interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:260034"
     Region          129..373
                     /region_name="NB-ARC"
                     /note="NB-ARC domain; pfam00931"
                     /db_xref="CDD:395745"
     Region          453..587
                     /region_name="APAF1_C"
                     /note="APAF-1 helical domain; pfam17908"
                     /db_xref="CDD:465560"
     Region          <606..910
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          659..695
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          700..738
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          745..780
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          799..835
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          803..1230
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          841..877
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          883..907
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1008..1043
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1048..1083
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1090..1125
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1131..1172
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1182..1215
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..1249
                     /gene="APAF1"
                     /coded_by="XM_054069755.1:210..3959"
                     /db_xref="GeneID:104055179"
ORIGIN      
        1 mdvksrnyll mnrqalekdi ktsyimdhmi sdevltlqee ervrqqstqr eraamlinii
       61 ltkdnnsyrs fynallhegy rdlaallqdg ipaissrngk ssvdgmtsyv ktvlceggvp
      121 qrpvvfvtrp klvdaikqkl rclgsdpgwv tvygmagcgk tvltaealkd hqllkdyfpg
      181 gvhwisvgkq dkaglliklq nlcsrlehds tlsqrpplnv eeakdrlrll mlrkyprsll
      241 ilddiwdswv lkafdnqcqv litsrdrsvt davagnkyev hvesglahek gleilslfvn
      301 mkiselpeqa nclvreckgs plvisligal lrdfpnrwey ylrqlqnkqf krirksssyd
      361 yealdeamsi sveqlndnyk dyykdlsilp kdvrvptkvl cilwdmetee vedilqefvn
      421 ksllfcdrng ksfhyylhdl qldflteknr nqlqelhkni vnqykkyykl ntpvpsqedc
      481 mywynflayh maganmqkel rdlmfsldwi raktelvgpa hliheyveys tildqkdstv
      541 renfqeflsl nghllgrqpf pdiiqlglcq petsevyqqa klhaeretga fylewinkks
      601 lknlyrlvvr phrdavyhac fskdrqrias cgadktlqvf kaesgerlle inahddevlc
      661 cafsadgefv atcsadkkvk iwnsrtgqcr cvyeehteqv nccqfnnrsg qyllatcsnd
      721 tfiklwdlnk kycrntmmgh vhsvnhcrfs pndeyvascs tdgtvklwet rsgnelknie
      781 ikdffrnade qpddvevlvk ccswsrngdm ilvvaknkll lfdvktcell tqvivshhst
      841 iqycdfcpgd elvavalshc svelwniksl skvaycrghm swvhcvtfsp dgslfltssd
      901 dqtiriwetk kvckssdavl kseidvvfhn gevmilaiyn qkdlqlingn tdsviiqtaa
      961 qespiscccl sedlkfaafg qesgtikilq lldgkvlksq eayrtsvqhc rftsdcqili
     1021 ssahdsviqv wnwqlneclf lrghkeaikd frllenskll swsfdgtvkv wnistvnmek
     1081 dfachggavl scavspdgtr fsstsadkta kiwsfesssv lhklegheac vrcctfspnd
     1141 kllatgddkg eiriwnvltg allhlcspvt ldegepthgg wvtdlafspd skmlvssggy
     1201 lkwwdvttge slqnfytngt nlksihvspn frvyvtvdnl gilyvlqkl
//
LOCUS       XP_053925737            1249 aa            linear   VRT 09-MAR-2023
DEFINITION  apoptotic protease-activating factor 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053925737
VERSION     XP_053925737.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069762.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1249
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1249
                     /product="apoptotic protease-activating factor 1 isoform
                     X1"
                     /calculated_mol_wt=142268
     Region          7..92
                     /region_name="CARD_APAF1"
                     /note="Caspase activation and recruitment domain similar
                     to that found in Apoptotic Protease-Activating Factor 1;
                     cd08323"
                     /db_xref="CDD:260034"
     Site            order(23..24,27..28,30..31,37,40)
                     /site_type="other"
                     /note="APAF1-Caspase9 interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:260034"
     Region          129..373
                     /region_name="NB-ARC"
                     /note="NB-ARC domain; pfam00931"
                     /db_xref="CDD:395745"
     Region          453..587
                     /region_name="APAF1_C"
                     /note="APAF-1 helical domain; pfam17908"
                     /db_xref="CDD:465560"
     Region          <606..910
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          659..695
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          700..738
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          745..780
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          799..835
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          803..1230
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          841..877
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          883..907
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1008..1043
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1048..1083
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1090..1125
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1131..1172
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1182..1215
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..1249
                     /gene="APAF1"
                     /coded_by="XM_054069762.1:395..4144"
                     /db_xref="GeneID:104055179"
ORIGIN      
        1 mdvksrnyll mnrqalekdi ktsyimdhmi sdevltlqee ervrqqstqr eraamlinii
       61 ltkdnnsyrs fynallhegy rdlaallqdg ipaissrngk ssvdgmtsyv ktvlceggvp
      121 qrpvvfvtrp klvdaikqkl rclgsdpgwv tvygmagcgk tvltaealkd hqllkdyfpg
      181 gvhwisvgkq dkaglliklq nlcsrlehds tlsqrpplnv eeakdrlrll mlrkyprsll
      241 ilddiwdswv lkafdnqcqv litsrdrsvt davagnkyev hvesglahek gleilslfvn
      301 mkiselpeqa nclvreckgs plvisligal lrdfpnrwey ylrqlqnkqf krirksssyd
      361 yealdeamsi sveqlndnyk dyykdlsilp kdvrvptkvl cilwdmetee vedilqefvn
      421 ksllfcdrng ksfhyylhdl qldflteknr nqlqelhkni vnqykkyykl ntpvpsqedc
      481 mywynflayh maganmqkel rdlmfsldwi raktelvgpa hliheyveys tildqkdstv
      541 renfqeflsl nghllgrqpf pdiiqlglcq petsevyqqa klhaeretga fylewinkks
      601 lknlyrlvvr phrdavyhac fskdrqrias cgadktlqvf kaesgerlle inahddevlc
      661 cafsadgefv atcsadkkvk iwnsrtgqcr cvyeehteqv nccqfnnrsg qyllatcsnd
      721 tfiklwdlnk kycrntmmgh vhsvnhcrfs pndeyvascs tdgtvklwet rsgnelknie
      781 ikdffrnade qpddvevlvk ccswsrngdm ilvvaknkll lfdvktcell tqvivshhst
      841 iqycdfcpgd elvavalshc svelwniksl skvaycrghm swvhcvtfsp dgslfltssd
      901 dqtiriwetk kvckssdavl kseidvvfhn gevmilaiyn qkdlqlingn tdsviiqtaa
      961 qespiscccl sedlkfaafg qesgtikilq lldgkvlksq eayrtsvqhc rftsdcqili
     1021 ssahdsviqv wnwqlneclf lrghkeaikd frllenskll swsfdgtvkv wnistvnmek
     1081 dfachggavl scavspdgtr fsstsadkta kiwsfesssv lhklegheac vrcctfspnd
     1141 kllatgddkg eiriwnvltg allhlcspvt ldegepthgg wvtdlafspd skmlvssggy
     1201 lkwwdvttge slqnfytngt nlksihvspn frvyvtvdnl gilyvlqkl
//
LOCUS       XP_053925744            1249 aa            linear   VRT 09-MAR-2023
DEFINITION  apoptotic protease-activating factor 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053925744
VERSION     XP_053925744.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069769.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1249
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1249
                     /product="apoptotic protease-activating factor 1 isoform
                     X1"
                     /calculated_mol_wt=142268
     Region          7..92
                     /region_name="CARD_APAF1"
                     /note="Caspase activation and recruitment domain similar
                     to that found in Apoptotic Protease-Activating Factor 1;
                     cd08323"
                     /db_xref="CDD:260034"
     Site            order(23..24,27..28,30..31,37,40)
                     /site_type="other"
                     /note="APAF1-Caspase9 interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:260034"
     Region          129..373
                     /region_name="NB-ARC"
                     /note="NB-ARC domain; pfam00931"
                     /db_xref="CDD:395745"
     Region          453..587
                     /region_name="APAF1_C"
                     /note="APAF-1 helical domain; pfam17908"
                     /db_xref="CDD:465560"
     Region          <606..910
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          659..695
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          700..738
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          745..780
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          799..835
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          803..1230
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          841..877
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          883..907
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1008..1043
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1048..1083
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1090..1125
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1131..1172
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1182..1215
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..1249
                     /gene="APAF1"
                     /coded_by="XM_054069769.1:103..3852"
                     /db_xref="GeneID:104055179"
ORIGIN      
        1 mdvksrnyll mnrqalekdi ktsyimdhmi sdevltlqee ervrqqstqr eraamlinii
       61 ltkdnnsyrs fynallhegy rdlaallqdg ipaissrngk ssvdgmtsyv ktvlceggvp
      121 qrpvvfvtrp klvdaikqkl rclgsdpgwv tvygmagcgk tvltaealkd hqllkdyfpg
      181 gvhwisvgkq dkaglliklq nlcsrlehds tlsqrpplnv eeakdrlrll mlrkyprsll
      241 ilddiwdswv lkafdnqcqv litsrdrsvt davagnkyev hvesglahek gleilslfvn
      301 mkiselpeqa nclvreckgs plvisligal lrdfpnrwey ylrqlqnkqf krirksssyd
      361 yealdeamsi sveqlndnyk dyykdlsilp kdvrvptkvl cilwdmetee vedilqefvn
      421 ksllfcdrng ksfhyylhdl qldflteknr nqlqelhkni vnqykkyykl ntpvpsqedc
      481 mywynflayh maganmqkel rdlmfsldwi raktelvgpa hliheyveys tildqkdstv
      541 renfqeflsl nghllgrqpf pdiiqlglcq petsevyqqa klhaeretga fylewinkks
      601 lknlyrlvvr phrdavyhac fskdrqrias cgadktlqvf kaesgerlle inahddevlc
      661 cafsadgefv atcsadkkvk iwnsrtgqcr cvyeehteqv nccqfnnrsg qyllatcsnd
      721 tfiklwdlnk kycrntmmgh vhsvnhcrfs pndeyvascs tdgtvklwet rsgnelknie
      781 ikdffrnade qpddvevlvk ccswsrngdm ilvvaknkll lfdvktcell tqvivshhst
      841 iqycdfcpgd elvavalshc svelwniksl skvaycrghm swvhcvtfsp dgslfltssd
      901 dqtiriwetk kvckssdavl kseidvvfhn gevmilaiyn qkdlqlingn tdsviiqtaa
      961 qespiscccl sedlkfaafg qesgtikilq lldgkvlksq eayrtsvqhc rftsdcqili
     1021 ssahdsviqv wnwqlneclf lrghkeaikd frllenskll swsfdgtvkv wnistvnmek
     1081 dfachggavl scavspdgtr fsstsadkta kiwsfesssv lhklegheac vrcctfspnd
     1141 kllatgddkg eiriwnvltg allhlcspvt ldegepthgg wvtdlafspd skmlvssggy
     1201 lkwwdvttge slqnfytngt nlksihvspn frvyvtvdnl gilyvlqkl
//
LOCUS       XP_053925751             659 aa            linear   VRT 09-MAR-2023
DEFINITION  apoptotic protease-activating factor 1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053925751
VERSION     XP_053925751.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069776.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..659
                     /product="apoptotic protease-activating factor 1 isoform
                     X2"
                     /calculated_mol_wt=76249
     Region          7..92
                     /region_name="DD"
                     /note="Death Domain Superfamily of protein-protein
                     interaction domains; cl14633"
                     /db_xref="CDD:472698"
     Region          129..373
                     /region_name="NB-ARC"
                     /note="NB-ARC domain; pfam00931"
                     /db_xref="CDD:395745"
     Region          453..587
                     /region_name="APAF1_C"
                     /note="APAF-1 helical domain; pfam17908"
                     /db_xref="CDD:465560"
     Region          608..641
                     /region_name="WD40"
                     /note="WD40 repeats; smart00320"
                     /db_xref="CDD:197651"
     CDS             1..659
                     /gene="APAF1"
                     /coded_by="XM_054069776.1:210..2189"
                     /db_xref="GeneID:104055179"
ORIGIN      
        1 mdvksrnyll mnrqalekdi ktsyimdhmi sdevltlqee ervrqqstqr eraamlinii
       61 ltkdnnsyrs fynallhegy rdlaallqdg ipaissrngk ssvdgmtsyv ktvlceggvp
      121 qrpvvfvtrp klvdaikqkl rclgsdpgwv tvygmagcgk tvltaealkd hqllkdyfpg
      181 gvhwisvgkq dkaglliklq nlcsrlehds tlsqrpplnv eeakdrlrll mlrkyprsll
      241 ilddiwdswv lkafdnqcqv litsrdrsvt davagnkyev hvesglahek gleilslfvn
      301 mkiselpeqa nclvreckgs plvisligal lrdfpnrwey ylrqlqnkqf krirksssyd
      361 yealdeamsi sveqlndnyk dyykdlsilp kdvrvptkvl cilwdmetee vedilqefvn
      421 ksllfcdrng ksfhyylhdl qldflteknr nqlqelhkni vnqykkyykl ntpvpsqedc
      481 mywynflayh maganmqkel rdlmfsldwi raktelvgpa hliheyveys tildqkdstv
      541 renfqeflsl nghllgrqpf pdiiqlglcq petsevyqqa klhaeretga fylewinkks
      601 lknlyrlvvr phrdavyhac fskdrqrias cgadktlqfa wrgasqlsrk laisqpvtw
//
LOCUS       XP_053925761             539 aa            linear   VRT 09-MAR-2023
DEFINITION  apoptotic protease-activating factor 1 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053925761
VERSION     XP_053925761.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069786.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..539
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..539
                     /product="apoptotic protease-activating factor 1 isoform
                     X3"
                     /calculated_mol_wt=62496
     Region          7..92
                     /region_name="DD"
                     /note="Death Domain Superfamily of protein-protein
                     interaction domains; cl14633"
                     /db_xref="CDD:472698"
     Region          129..373
                     /region_name="NB-ARC"
                     /note="NB-ARC domain; pfam00931"
                     /db_xref="CDD:395745"
     Region          453..>536
                     /region_name="APAF1_C"
                     /note="APAF-1 helical domain; pfam17908"
                     /db_xref="CDD:465560"
     CDS             1..539
                     /gene="APAF1"
                     /coded_by="XM_054069786.1:210..1829"
                     /db_xref="GeneID:104055179"
ORIGIN      
        1 mdvksrnyll mnrqalekdi ktsyimdhmi sdevltlqee ervrqqstqr eraamlinii
       61 ltkdnnsyrs fynallhegy rdlaallqdg ipaissrngk ssvdgmtsyv ktvlceggvp
      121 qrpvvfvtrp klvdaikqkl rclgsdpgwv tvygmagcgk tvltaealkd hqllkdyfpg
      181 gvhwisvgkq dkaglliklq nlcsrlehds tlsqrpplnv eeakdrlrll mlrkyprsll
      241 ilddiwdswv lkafdnqcqv litsrdrsvt davagnkyev hvesglahek gleilslfvn
      301 mkiselpeqa nclvreckgs plvisligal lrdfpnrwey ylrqlqnkqf krirksssyd
      361 yealdeamsi sveqlndnyk dyykdlsilp kdvrvptkvl cilwdmetee vedilqefvn
      421 ksllfcdrng ksfhyylhdl qldflteknr nqlqelhkni vnqykkyykl ntpvpsqedc
      481 mywynflayh maganmqkel rdlmfsldwi raktelvgpa hliheyveys tildqkvwy
//
LOCUS       XP_053925777             473 aa            linear   VRT 09-MAR-2023
DEFINITION  thymopoietin isoform X1 [Cuculus canorus].
ACCESSION   XP_053925777
VERSION     XP_053925777.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069802.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..473
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..473
                     /product="thymopoietin isoform X1"
                     /calculated_mol_wt=53125
     Region          2..49
                     /region_name="Thymopoietin"
                     /note="Thymopoietin protein; pfam08198"
                     /db_xref="CDD:400486"
     Region          96..>124
                     /region_name="LEM_LAP2_LEMD1"
                     /note="LEM (Lap2/Emerin/Man1) domain found in
                     lamina-associated polypeptide 2 (LAP2), LEM
                     domain-containing protein 1 (LEMP-1) and similar proteins;
                     cd12940"
                     /db_xref="CDD:240587"
     CDS             1..473
                     /gene="TMPO"
                     /coded_by="XM_054069802.1:178..1599"
                     /db_xref="GeneID:104055192"
ORIGIN      
        1 mpeflsdpsv ltkeklksel iannvslpgg eqrkdvyvql ylqhltarnp paaaqpdfss
       61 deereptplg arsraagrka tkktdkprpe ekddlditem snedlqeqlv kygvnpgpiv
      121 attrklyekk llklmeqgpe lkapiplpai sstaentrqn gnndsdqysd needpktelr
      181 lekreplkak tkvsvalkqr rvvdhnqtys qdgvtetgwt sgssksgplq afsrestrvs
      241 rrtprrrvea taqlpvddav itastpiaen iltasnetlv vnrvpgnvkh aaptlsisel
      301 sdmprrtpkk plitaeqeet dwphqcffnv ghnqscdlln tamievlert hteerrverd
      361 ilkemfpyea stptgisasc rkpikgaasr pieysdfrme esfskyapky ststdiktek
      421 ppvkkersip lwikillflv vlvflflvyq smetnrgnpf seyrsmpfqg dak
//
LOCUS       XP_053925786             444 aa            linear   VRT 09-MAR-2023
DEFINITION  thymopoietin isoform X2 [Cuculus canorus].
ACCESSION   XP_053925786
VERSION     XP_053925786.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069811.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..444
                     /product="thymopoietin isoform X2"
                     /calculated_mol_wt=49736
     Region          2..49
                     /region_name="Thymopoietin"
                     /note="Thymopoietin protein; pfam08198"
                     /db_xref="CDD:400486"
     Region          96..>124
                     /region_name="LEM_LAP2_LEMD1"
                     /note="LEM (Lap2/Emerin/Man1) domain found in
                     lamina-associated polypeptide 2 (LAP2), LEM
                     domain-containing protein 1 (LEMP-1) and similar proteins;
                     cd12940"
                     /db_xref="CDD:240587"
     CDS             1..444
                     /gene="TMPO"
                     /coded_by="XM_054069811.1:176..1510"
                     /db_xref="GeneID:104055192"
ORIGIN      
        1 mpeflsdpsv ltkeklksel iannvslpgg eqrkdvyvql ylqhltarnp paaaqpdfss
       61 deereptplg arsraagrka tkktdkprpe ekddlditem snedlqeqlv kygvnpgpiv
      121 attrklyekk llklmeqgpe lkapiplpai sstaentrqn gnndsdqysd needpktelr
      181 lekreplkak tkvsvalkqr rvvdhnqtys qdgvtetgwt sgssksgplq afsrestrvs
      241 rrtprrrvea taqlpvddav itastpiaen iltasnetlv vnrvpgnvkh aaptlsisel
      301 sdmprrtpkk plitaevler thteerrver dilkemfpye astptgisas crkpikgaas
      361 rpieysdfrm eesfskyapk yststdikte kppvkkersi plwikillfl vvlvflflvy
      421 qsmetnrgnp fseyrsmpfq gdak
//
LOCUS       XP_053925795             401 aa            linear   VRT 09-MAR-2023
DEFINITION  thymopoietin isoform X3 [Cuculus canorus].
ACCESSION   XP_053925795
VERSION     XP_053925795.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069820.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..401
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..401
                     /product="thymopoietin isoform X3"
                     /calculated_mol_wt=45419
     Region          2..49
                     /region_name="Thymopoietin"
                     /note="Thymopoietin protein; pfam08198"
                     /db_xref="CDD:400486"
     Region          96..>124
                     /region_name="LEM_LAP2_LEMD1"
                     /note="LEM (Lap2/Emerin/Man1) domain found in
                     lamina-associated polypeptide 2 (LAP2), LEM
                     domain-containing protein 1 (LEMP-1) and similar proteins;
                     cd12940"
                     /db_xref="CDD:240587"
     CDS             1..401
                     /gene="TMPO"
                     /coded_by="XM_054069820.1:178..1383"
                     /db_xref="GeneID:104055192"
ORIGIN      
        1 mpeflsdpsv ltkeklksel iannvslpgg eqrkdvyvql ylqhltarnp paaaqpdfss
       61 deereptplg arsraagrka tkktdkprpe ekddlditem snedlqeqlv kygvnpgpiv
      121 attrklyekk llklmeqgpe lkapiplpai sstaentrqn gnndsdqysd needpktelr
      181 lekreplkak tkvsvalkqr rvvdhnqvvn rvpgnvkhaa ptlsiselsd mprrtpkkpl
      241 itaeqeetdw phqcffnvgh nqscdllnta mievlertht eerrverdil kemfpyeast
      301 ptgisascrk pikgaasrpi eysdfrmees fskyapkyst stdiktekpp vkkersiplw
      361 ikillflvvl vflflvyqsm etnrgnpfse yrsmpfqgda k
//
LOCUS       XP_053925803             372 aa            linear   VRT 09-MAR-2023
DEFINITION  thymopoietin isoform X4 [Cuculus canorus].
ACCESSION   XP_053925803
VERSION     XP_053925803.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069828.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..372
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..372
                     /product="thymopoietin isoform X4"
                     /calculated_mol_wt=42029
     Region          2..49
                     /region_name="Thymopoietin"
                     /note="Thymopoietin protein; pfam08198"
                     /db_xref="CDD:400486"
     Region          96..>124
                     /region_name="LEM_LAP2_LEMD1"
                     /note="LEM (Lap2/Emerin/Man1) domain found in
                     lamina-associated polypeptide 2 (LAP2), LEM
                     domain-containing protein 1 (LEMP-1) and similar proteins;
                     cd12940"
                     /db_xref="CDD:240587"
     CDS             1..372
                     /gene="TMPO"
                     /coded_by="XM_054069828.1:177..1295"
                     /db_xref="GeneID:104055192"
ORIGIN      
        1 mpeflsdpsv ltkeklksel iannvslpgg eqrkdvyvql ylqhltarnp paaaqpdfss
       61 deereptplg arsraagrka tkktdkprpe ekddlditem snedlqeqlv kygvnpgpiv
      121 attrklyekk llklmeqgpe lkapiplpai sstaentrqn gnndsdqysd needpktelr
      181 lekreplkak tkvsvalkqr rvvdhnqvvn rvpgnvkhaa ptlsiselsd mprrtpkkpl
      241 itaevlerth teerrverdi lkemfpyeas tptgisascr kpikgaasrp ieysdfrmee
      301 sfskyapkys tstdiktekp pvkkersipl wikillflvv lvflflvyqs metnrgnpfs
      361 eyrsmpfqgd ak
//
LOCUS       XP_053925810             335 aa            linear   VRT 09-MAR-2023
DEFINITION  thymopoietin isoform X5 [Cuculus canorus].
ACCESSION   XP_053925810
VERSION     XP_053925810.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069835.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..335
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..335
                     /product="thymopoietin isoform X5"
                     /calculated_mol_wt=38023
     Region          2..49
                     /region_name="Thymopoietin"
                     /note="Thymopoietin protein; pfam08198"
                     /db_xref="CDD:400486"
     Region          96..>124
                     /region_name="LEM_LAP2_LEMD1"
                     /note="LEM (Lap2/Emerin/Man1) domain found in
                     lamina-associated polypeptide 2 (LAP2), LEM
                     domain-containing protein 1 (LEMP-1) and similar proteins;
                     cd12940"
                     /db_xref="CDD:240587"
     CDS             1..335
                     /gene="TMPO"
                     /coded_by="XM_054069835.1:177..1184"
                     /db_xref="GeneID:104055192"
ORIGIN      
        1 mpeflsdpsv ltkeklksel iannvslpgg eqrkdvyvql ylqhltarnp paaaqpdfss
       61 deereptplg arsraagrka tkktdkprpe ekddlditem snedlqeqlv kygvnpgpiv
      121 attrklyekk llklmeqgpe lkapiplpai sstaentrqn gnndsdqysd needpktelr
      181 lekreplkak tkvsvalkqr rvvdhnqvle rthteerrve rdilkemfpy eastptgisa
      241 scrkpikgaa srpieysdfr meesfskyap kyststdikt ekppvkkers iplwikillf
      301 lvvlvflflv yqsmetnrgn pfseyrsmpf qgdak
//
LOCUS       XP_053925821             379 aa            linear   VRT 09-MAR-2023
DEFINITION  inhibitor of nuclear factor kappa-B kinase-interacting protein
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053925821
VERSION     XP_053925821.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069846.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..379
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..379
                     /product="inhibitor of nuclear factor kappa-B
                     kinase-interacting protein isoform X1"
                     /calculated_mol_wt=43325
     Region          <72..>305
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..379
                     /gene="IKBIP"
                     /coded_by="XM_054069846.1:328..1467"
                     /db_xref="GeneID:104055178"
ORIGIN      
        1 msevkhrkkv ssfktnegsq kvekhsncgk lasprissne ssfwmdsrtt lsiislamcl
       61 vlawllfrqs gqfadmekky nflqqeaekf tdvenkvnli seklessest lqeaassisv
      121 mpefeqeiss lhniinniqy neqtfsikmq sitenfenvr dswrrsldem ntntsglkse
      181 akfihaevts qinevdqrik slservrdle dstarniktl krqeddefsr veqklglhak
      241 eveklekeqn slvakdrdln qklvnyepki eerkthlpti enaihsilrl ssellsmekk
      301 vedlsaqlya vendmlttvs dtvamqkvle gmqynnsllk vqneivvveg vvpdikvssk
      361 akeitlesyn fkndqngdk
//
LOCUS       XP_053925828             379 aa            linear   VRT 09-MAR-2023
DEFINITION  inhibitor of nuclear factor kappa-B kinase-interacting protein
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053925828
VERSION     XP_053925828.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069853.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..379
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..379
                     /product="inhibitor of nuclear factor kappa-B
                     kinase-interacting protein isoform X1"
                     /calculated_mol_wt=43325
     Region          <72..>305
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..379
                     /gene="IKBIP"
                     /coded_by="XM_054069853.1:175..1314"
                     /db_xref="GeneID:104055178"
ORIGIN      
        1 msevkhrkkv ssfktnegsq kvekhsncgk lasprissne ssfwmdsrtt lsiislamcl
       61 vlawllfrqs gqfadmekky nflqqeaekf tdvenkvnli seklessest lqeaassisv
      121 mpefeqeiss lhniinniqy neqtfsikmq sitenfenvr dswrrsldem ntntsglkse
      181 akfihaevts qinevdqrik slservrdle dstarniktl krqeddefsr veqklglhak
      241 eveklekeqn slvakdrdln qklvnyepki eerkthlpti enaihsilrl ssellsmekk
      301 vedlsaqlya vendmlttvs dtvamqkvle gmqynnsllk vqneivvveg vvpdikvssk
      361 akeitlesyn fkndqngdk
//
LOCUS       XP_053925837             354 aa            linear   VRT 09-MAR-2023
DEFINITION  inhibitor of nuclear factor kappa-B kinase-interacting protein
            isoform X2 [Cuculus canorus].
ACCESSION   XP_053925837
VERSION     XP_053925837.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069862.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..354
                     /product="inhibitor of nuclear factor kappa-B
                     kinase-interacting protein isoform X2"
                     /calculated_mol_wt=40302
     Region          <83..351
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     CDS             1..354
                     /gene="IKBIP"
                     /coded_by="XM_054069862.1:319..1383"
                     /db_xref="GeneID:104055178"
ORIGIN      
        1 msevkhrkkv ssfktnegsq kvekhsncgk lasprissne ssfwmdsrtt lsiislamcl
       61 vlawllfrqs gqfadmekky nflqqeaekf tdvenkvnli sekcektwnl meeledpqti
      121 shikhlqedi ytmktwcssi iknqeelhkn lttlfhavss veqnaasvtk nitltivtvk
      181 tdirrisglv sdmtaltdsl qtledkvekg ekktiknigd lltssidrst elqslassna
      241 kkieqiktal selrsdfnkh sdrllnlesd rakvlktvtf andvkpkmyk lkkdfatldp
      301 lisdltlrig rlvedvlrre kdiallnekl anltrvrtei kdmkdeltki sdmn
//
LOCUS       XP_053925848             355 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphate carrier protein, mitochondrial isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053925848
VERSION     XP_053925848.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069873.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..355
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..355
                     /product="phosphate carrier protein, mitochondrial isoform
                     X1"
                     /calculated_mol_wt=39231
     Region          53..145
                     /region_name="Mito_carr"
                     /note="Mitochondrial carrier protein; pfam00153"
                     /db_xref="CDD:395101"
     Region          <171..241
                     /region_name="Mito_carr"
                     /note="Mitochondrial carrier protein; pfam00153"
                     /db_xref="CDD:395101"
     Region          256..334
                     /region_name="Mito_carr"
                     /note="Mitochondrial carrier protein; pfam00153"
                     /db_xref="CDD:395101"
     CDS             1..355
                     /gene="SLC25A3"
                     /coded_by="XM_054069873.1:146..1213"
                     /db_xref="GeneID:104055193"
ORIGIN      
        1 mfssiaplsr lnpfcaphfq lgqdgvrrrt eppatrrsla aaaaeeeysc eygslkfyal
       61 cgvggvlscg lthtavvpld lvkcrmqvdp qkykgifngf svtlkedgvr glakgwaptf
      121 igysmqglck fgfyevfkil ygnmlgeena ylwrtslyla asasaeffad ialapmeaak
      181 vriqtqpgya ntlrqaapkm fgeegiwafy kgvaplwmrq ipytmmkfac fertvealyk
      241 yvvpkprsec skgeqlvvtf vagyiagvfc aivshpadsv vsvlnkekgs sasqvlvrlg
      301 fkgvwkglfa riimigtlta lqwfiydsvk vyfrlprppp pempeslkkk lglte
//
LOCUS       XP_053925854             355 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphate carrier protein, mitochondrial isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053925854
VERSION     XP_053925854.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069879.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..355
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..355
                     /product="phosphate carrier protein, mitochondrial isoform
                     X2"
                     /calculated_mol_wt=39201
     Region          57..145
                     /region_name="Mito_carr"
                     /note="Mitochondrial carrier protein; pfam00153"
                     /db_xref="CDD:395101"
     Region          <171..241
                     /region_name="Mito_carr"
                     /note="Mitochondrial carrier protein; pfam00153"
                     /db_xref="CDD:395101"
     Region          256..334
                     /region_name="Mito_carr"
                     /note="Mitochondrial carrier protein; pfam00153"
                     /db_xref="CDD:395101"
     CDS             1..355
                     /gene="SLC25A3"
                     /coded_by="XM_054069879.1:147..1214"
                     /db_xref="GeneID:104055193"
ORIGIN      
        1 mfssiaplsr lnpfcaphfq lgqdgvrrrt eppatrrsla aaaaeeeysc aygsgrffll
       61 cglggiiscg tthtalvpld lvkcrmqvdp qkykgifngf svtlkedgvr glakgwaptf
      121 igysmqglck fgfyevfkil ygnmlgeena ylwrtslyla asasaeffad ialapmeaak
      181 vriqtqpgya ntlrqaapkm fgeegiwafy kgvaplwmrq ipytmmkfac fertvealyk
      241 yvvpkprsec skgeqlvvtf vagyiagvfc aivshpadsv vsvlnkekgs sasqvlvrlg
      301 fkgvwkglfa riimigtlta lqwfiydsvk vyfrlprppp pempeslkkk lglte
//
LOCUS       XP_053925866             539 aa            linear   VRT 09-MAR-2023
DEFINITION  ceramide kinase isoform X1 [Cuculus canorus].
ACCESSION   XP_053925866
VERSION     XP_053925866.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069891.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..539
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..539
                     /product="ceramide kinase isoform X1"
                     /calculated_mol_wt=61229
     Region          22..521
                     /region_name="DAGK_cat"
                     /note="Diacylglycerol kinase catalytic domain; cl01255"
                     /db_xref="CDD:445337"
     CDS             1..539
                     /gene="CERK"
                     /coded_by="XM_054069891.1:83..1702"
                     /db_xref="GeneID:104056075"
ORIGIN      
        1 meklpggrrm vsslglgqrc wevtldeerg rlswrhpprg agencfvpts eiiaveetel
       61 nkkqrnigkw qkmekpyaft vyyvkrarnh rwrcsdvtfw cvdehlcnqw iqalkeilem
      121 qksrpkqllv yinpyggkrq gkriyeqkva plfslasist dvvitehanh akdnlfevni
      181 nkydgvvcvg gdgmfsevmh gligrmqkds gidqnnpkap lvqcnirigi ipagstdcic
      241 ystvgisdpv tsalhiivgd cqpldvssvh hkntflkysv sllgygfygd ilkdsekkrw
      301 mgpirydysg lktflshhyy egticfqpak htlgsprdkd scrtgcyick kseqqlaeqh
      361 kerglkheed eeewkvikgk flainavnms cacprspkgl spaahladgs adlilvrkcs
      421 rfdflrylvr htnqddqfdf sfvdvyrvks fqftsklsed nesnvtdigk krfghfcrdh
      481 pvcccnians twncdgetld ssaievrvhc qlmklfargi eekckdeaay sqssdeqll
//
LOCUS       XP_053925875             538 aa            linear   VRT 09-MAR-2023
DEFINITION  ceramide kinase isoform X2 [Cuculus canorus].
ACCESSION   XP_053925875
VERSION     XP_053925875.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069900.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..538
                     /product="ceramide kinase isoform X2"
                     /calculated_mol_wt=61100
     Region          22..520
                     /region_name="DAGK_cat"
                     /note="Diacylglycerol kinase catalytic domain; cl01255"
                     /db_xref="CDD:445337"
     CDS             1..538
                     /gene="CERK"
                     /coded_by="XM_054069900.1:83..1699"
                     /db_xref="GeneID:104056075"
ORIGIN      
        1 meklpggrrm vsslglgqrc wevtldeerg rlswrhpprg agencfvpts eiiaveetel
       61 nkkqrnigkw qkmekpyaft vyyvkrarnh rwrcsdvtfw cvdehlcnqw iqalkeilem
      121 qksrpkqllv yinpyggkrq gkriyeqkva plfslasist dvvitehanh akdnlfevni
      181 nkydgvvcvg gdgmfsevmh gligrmqkds gidqnnpkap lvqcnirigi ipagstdcic
      241 ystvgisdpv tsalhiivgd cqpldvssvh hkntflkysv sllgygfygd ilkdsekkrw
      301 mgpirydysg lktflshhyy egticfqpak htlgsprdkd scrtgcyick kseqqlaeqh
      361 kerglkhede eewkvikgkf lainavnmsc acprspkgls paahladgsa dlilvrkcsr
      421 fdflrylvrh tnqddqfdfs fvdvyrvksf qftsklsedn esnvtdigkk rfghfcrdhp
      481 vcccnianst wncdgetlds saievrvhcq lmklfargie ekckdeaays qssdeqll
//
LOCUS       XP_053925883             498 aa            linear   VRT 09-MAR-2023
DEFINITION  ceramide kinase isoform X3 [Cuculus canorus].
ACCESSION   XP_053925883
VERSION     XP_053925883.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069908.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..498
                     /product="ceramide kinase isoform X3"
                     /calculated_mol_wt=56079
     Region          <83..480
                     /region_name="DAGK_cat"
                     /note="Diacylglycerol kinase catalytic domain; cl01255"
                     /db_xref="CDD:445337"
     CDS             1..498
                     /gene="CERK"
                     /coded_by="XM_054069908.1:83..1579"
                     /db_xref="GeneID:104056075"
ORIGIN      
        1 meklpggrrm vsslglgqrc wevtldeerg rlswrhpprg agencfvpts eiiaveetel
       61 nkkqrnigkw qkmekpyaft esrpkqllvy inpyggkrqg kriyeqkvap lfslasistd
      121 vvitehanha kdnlfevnin kydgvvcvgg dgmfsevmhg ligrmqkdsg idqnnpkapl
      181 vqcnirigii pagstdcicy stvgisdpvt salhiivgdc qpldvssvhh kntflkysvs
      241 llgygfygdi lkdsekkrwm gpirydysgl ktflshhyye gticfqpakh tlgsprdkds
      301 crtgcyickk seqqlaeqhk erglkheede eewkvikgkf lainavnmsc acprspkgls
      361 paahladgsa dlilvrkcsr fdflrylvrh tnqddqfdfs fvdvyrvksf qftsklsedn
      421 esnvtdigkk rfghfcrdhp vcccnianst wncdgetlds saievrvhcq lmklfargie
      481 ekckdeaays qssdeqll
//
LOCUS       XP_053925897            2454 aa            linear   VRT 09-MAR-2023
DEFINITION  histone acetyltransferase p300 isoform X1 [Cuculus canorus].
ACCESSION   XP_053925897
VERSION     XP_053925897.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069922.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2454
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2454
                     /product="histone acetyltransferase p300 isoform X1"
                     /calculated_mol_wt=268697
     Region          87..>294
                     /region_name="Med15"
                     /note="ARC105 or Med15 subunit of Mediator complex
                     non-fungal; pfam09606"
                     /db_xref="CDD:312941"
     Region          355..422
                     /region_name="zf-TAZ"
                     /note="TAZ zinc finger; pfam02135"
                     /db_xref="CDD:460457"
     Region          462..>861
                     /region_name="Med15"
                     /note="ARC105 or Med15 subunit of Mediator complex
                     non-fungal; pfam09606"
                     /db_xref="CDD:312941"
     Region          570..650
                     /region_name="KIX"
                     /note="KIX domain; pfam02172"
                     /db_xref="CDD:366953"
     Region          <933..>1105
                     /region_name="Not5"
                     /note="CCR4-NOT transcriptional regulation complex, NOT5
                     subunit [Transcription]; COG5665"
                     /db_xref="CDD:444384"
     Region          1071..1178
                     /region_name="Bromo_cbp_like"
                     /note="Bromodomain, cbp_like subfamily. Cbp (CREB binding
                     protein or CREBBP) is an acetyltransferase acting on
                     histone, which gives a specific tag for transcriptional
                     activation and also acetylates non-histone proteins.
                     CREBBP binds specifically to...; cd05495"
                     /db_xref="CDD:99927"
     Site            order(1099,1106,1109,1148,1152,1158)
                     /site_type="active"
                     /note="acetyllysine binding site [active]"
                     /db_xref="CDD:99927"
     Region          1190..1262
                     /region_name="RING_CBP-p300"
                     /note="atypical RING domain found in CREB-binding protein
                     and p300 histone acetyltransferases; cd15802"
                     /db_xref="CDD:276805"
     Site            order(1190,1193..1194,1260,1262)
                     /site_type="other"
                     /note="HAT interface [polypeptide binding]"
                     /db_xref="CDD:276805"
     Region          1263..1297
                     /region_name="PHD_p300"
                     /note="PHD finger found in histone acetyltransferase p300;
                     cd15646"
                     /db_xref="CDD:277116"
     Site            order(1263..1267,1271,1290)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277116"
     Region          1326..1632
                     /region_name="HAT_KAT11"
                     /note="Histone acetylation protein; pfam08214"
                     /db_xref="CDD:400497"
     Region          1688..1728
                     /region_name="ZZ_CBP"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     CBP/p300 and related proteins. The ZZ motif coordinates
                     two zinc ions and most likely participates in ligand
                     binding or molecular scaffolding. CREB-binding protein
                     (CBP) is a large multidomain protein that...; cd02337"
                     /db_xref="CDD:239077"
     Site            order(1690,1693,1703,1706,1712,1715,1721,1723)
                     /site_type="other"
                     /note="Zinc-binding sites [ion binding]"
                     /db_xref="CDD:239077"
     Site            order(1690,1693,1712,1715)
                     /site_type="other"
                     /note="zinc cluster 1 [ion binding]"
                     /db_xref="CDD:239077"
     Site            order(1691,1700,1702,1708,1710)
                     /site_type="active"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239077"
     Site            order(1701,1716,1725,1728)
                     /site_type="active"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239077"
     Site            order(1703,1706,1721,1723)
                     /site_type="other"
                     /note="zinc cluster 2 [ion binding]"
                     /db_xref="CDD:239077"
     Region          1755..1823
                     /region_name="zf-TAZ"
                     /note="TAZ zinc finger; pfam02135"
                     /db_xref="CDD:460457"
     Region          <1940..>2072
                     /region_name="PAT1"
                     /note="Topoisomerase II-associated protein PAT1;
                     pfam09770"
                     /db_xref="CDD:401645"
     Region          2014..>2418
                     /region_name="Med15"
                     /note="ARC105 or Med15 subunit of Mediator complex
                     non-fungal; pfam09606"
                     /db_xref="CDD:312941"
     Region          2016..2120
                     /region_name="Creb_binding"
                     /note="Creb binding; pfam09030"
                     /db_xref="CDD:462659"
     CDS             1..2454
                     /gene="EP300"
                     /coded_by="XM_054069922.1:337..7701"
                     /db_xref="GeneID:104055501"
ORIGIN      
        1 maenvvepgp psakrpklss palsvsasdg tdfgspfdle hdlpdeliss telgltnggd
       61 inqlqtslgl aqdaaskhkq lsellragss pninmgvggp gqgmasqtqq nspgmgmlns
      121 mvkspmaqag ltspnmamga sgpnqgpsaq stagmmptvn spvnqpgmgm ntgmnagmnp
      181 gmlaagngqg mmqgqvmngs igagrgrpnm pypnpgmgna gnllaetlqq gspqmggqag
      241 lrgpqpgamn kmgmmgnpnp ygqtysqntg qqigasglgp qmqnkaglqn slpqfpmdkk
      301 pvpaagmpnm gqqqaqqvqq agmgpaasqg mgsgaptadp ekrkliqqql vlllhahkcq
      361 rreqangevr qcnlphcrtm knvlnhmthc qagkscqvah cassrqiish wknctrhdcp
      421 vclplknagd krnqqsllgg aavglantgs vgvgqqttps inttsqidps sierayaalg
      481 ltyqgnqmqt qpqaqvknqq qgqspqglrp mnpmsanpmg vnggvgvqtp nllpdsmlhs
      541 tmnsqnpmms estsvaslga mptaqpsntg irkqwhedit qdlrnhlvhk lvqaifptpd
      601 paalkdrrme nlvayarkve gdmyesansr aeyyhllaek iykiqkelee krrtrlqkqn
      661 mipnapgmpq apmnqgpnmg qpqpgmsang plpdptlira nvpnqmmnrm qaqpgmnqfg
      721 qmnmqlspmg prqtsplqhp gqlsqagamn qqmgfpsrmq qpgvgqpsgq sqflqqtqfp
      781 tsspgmntas mpmtqpgsqt pvsqaqitst scpvnspama pgsqgshihc pplpqppmhr
      841 nspspvpsrt ptphhtppsl gsqqqqasaa aattaptptp qamppgpqsq tmhppqrqtp
      901 tppqaqlppq vqppvpvtps aeqqqqplsq qsttasvptp taplqpqhpt tplsqpavsi
      961 dgqvsnppst sstevnsqqa vpeqqqpplq evkmeiktde gepeqtdlqm eeksevkaep
     1021 vaeeckpdpm eqeekkseak teipegeerp ttpatqsspa agqskkkifk peelrqalmp
     1081 tlealyrqdp eslpfrqpvd pqllgipdyf divknpmdls tikrkldtgq yqepwqyvdd
     1141 iwlmfnnawl ynrktsrvyk ycsklaevfe qeidpvmqsl gyccgrklef spqtlccygk
     1201 qlctiprdat yysyqnryhf cekcfneiqg esvslgddps qpqttinkeq fskrkndtld
     1261 pelfveciec grkmhqicvl hneiiwpsgf vcdgclkktg rtrkenkfsa krlpatrlgt
     1321 flenrvndfl rrqnhpeage vtvrvvhasd ktvevkpgmk arfvdsgema esfpyrtkal
     1381 fafeeidgvd lcffgmhvqe ygsdcpppnq rrvyisylds vhffrpkclr tavyheilig
     1441 yleyvkklgy ttghiwacpp segddyifhc hppdqkipkp krlqewykkm ldksvseriv
     1501 hdykdifkqa tedrltsake lpyfegdfwp nvleesikel eqeeeerkre entsnestdv
     1561 skgdsknakk knnkktsknk sslsrgnkkk pgmpnvsndl sqklyatmek hkevffvirl
     1621 iagpaanslp pivepdplip cdlmdgrdaf ltlardkhle fsslrraqws tmcmlvelht
     1681 qsqdrfvytc neckhhvetr whctvcedyd lcitcyntkn hdhkmeklgl glddesnnqq
     1741 tattqspgds rrlsiqrciq slvhacqcrn ancslpscqk mkrvvqhtkg ckrktnggcp
     1801 ickqlialcc yhakhcqenk cpvpfclnik hklrqqqlqh rlqqaqmlrr rmasmqrtgv
     1861 vgqqqglpsp tpatpttptg qqpptpqtpq pqpppqpasq pqpvppnsmp pytmsrtqpp
     1921 savsqgkagg qvtpptppqp pqppvqgppp aavemamqiq raaetqrqma qvqifqrpiq
     1981 hqmpqmppmg mnppqigrgp gghidqgmgp tgmqqqppwv qgglpqaqlq pgmqrpsmms
     2041 vaqpgqpmnm apqpgmgqvp gaaqpkqppl pqaalqnllr tlrspsspmq qqqvlnilhs
     2101 npqllaafik qraakyvgsq npqgmtgqpg ipqgqpglqp qqamqgqqgg vhpnpamqnm
     2161 npmqagvqrp smpqqqpqqq pqqamagmnp qaqqmnmnhs gmapqfrdll mrrhqmieqq
     2221 rhqqqqqqqg agpalgpgma nhnqfqqpqg vgypqqqqqq qqqqrmqhhm qqmqqgnmgq
     2281 isqlpqamsa etgaslqqaf qqrllqqqmg spaqpnpmsp qqhmlpsqaq sphlqgqqlp
     2341 ssltnqvrsp qpvpsprpqs qpphsspspr mqpqpsphhv spqtssphpg lvaaqanpmd
     2401 qghfaspdqs amlsqlasnp gmaglhgtsa telglssens dlnsnlsqst ldih
//
LOCUS       XP_053925905            2453 aa            linear   VRT 09-MAR-2023
DEFINITION  histone acetyltransferase p300 isoform X2 [Cuculus canorus].
ACCESSION   XP_053925905
VERSION     XP_053925905.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069930.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2453
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2453
                     /product="histone acetyltransferase p300 isoform X2"
                     /calculated_mol_wt=268569
     Region          87..>294
                     /region_name="Med15"
                     /note="ARC105 or Med15 subunit of Mediator complex
                     non-fungal; pfam09606"
                     /db_xref="CDD:312941"
     Region          355..422
                     /region_name="zf-TAZ"
                     /note="TAZ zinc finger; pfam02135"
                     /db_xref="CDD:460457"
     Region          570..650
                     /region_name="KIX"
                     /note="KIX domain; pfam02172"
                     /db_xref="CDD:366953"
     Region          645..>1003
                     /region_name="Atrophin-1"
                     /note="Atrophin-1 family; pfam03154"
                     /db_xref="CDD:460830"
     Region          1070..1177
                     /region_name="Bromo_cbp_like"
                     /note="Bromodomain, cbp_like subfamily. Cbp (CREB binding
                     protein or CREBBP) is an acetyltransferase acting on
                     histone, which gives a specific tag for transcriptional
                     activation and also acetylates non-histone proteins.
                     CREBBP binds specifically to...; cd05495"
                     /db_xref="CDD:99927"
     Site            order(1098,1105,1108,1147,1151,1157)
                     /site_type="active"
                     /note="acetyllysine binding site [active]"
                     /db_xref="CDD:99927"
     Region          1189..1261
                     /region_name="RING_CBP-p300"
                     /note="atypical RING domain found in CREB-binding protein
                     and p300 histone acetyltransferases; cd15802"
                     /db_xref="CDD:276805"
     Site            order(1189,1192..1193,1259,1261)
                     /site_type="other"
                     /note="HAT interface [polypeptide binding]"
                     /db_xref="CDD:276805"
     Region          1262..1296
                     /region_name="PHD_p300"
                     /note="PHD finger found in histone acetyltransferase p300;
                     cd15646"
                     /db_xref="CDD:277116"
     Site            order(1262..1266,1270,1289)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277116"
     Region          1325..1631
                     /region_name="HAT_KAT11"
                     /note="Histone acetylation protein; pfam08214"
                     /db_xref="CDD:400497"
     Region          1687..1727
                     /region_name="ZZ_CBP"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     CBP/p300 and related proteins. The ZZ motif coordinates
                     two zinc ions and most likely participates in ligand
                     binding or molecular scaffolding. CREB-binding protein
                     (CBP) is a large multidomain protein that...; cd02337"
                     /db_xref="CDD:239077"
     Site            order(1689,1692,1702,1705,1711,1714,1720,1722)
                     /site_type="other"
                     /note="Zinc-binding sites [ion binding]"
                     /db_xref="CDD:239077"
     Site            order(1689,1692,1711,1714)
                     /site_type="other"
                     /note="zinc cluster 1 [ion binding]"
                     /db_xref="CDD:239077"
     Site            order(1690,1699,1701,1707,1709)
                     /site_type="active"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239077"
     Site            order(1700,1715,1724,1727)
                     /site_type="active"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239077"
     Site            order(1702,1705,1720,1722)
                     /site_type="other"
                     /note="zinc cluster 2 [ion binding]"
                     /db_xref="CDD:239077"
     Region          1754..1822
                     /region_name="zf-TAZ"
                     /note="TAZ zinc finger; pfam02135"
                     /db_xref="CDD:460457"
     Region          <1939..>2071
                     /region_name="PAT1"
                     /note="Topoisomerase II-associated protein PAT1;
                     pfam09770"
                     /db_xref="CDD:401645"
     Region          2013..>2417
                     /region_name="Med15"
                     /note="ARC105 or Med15 subunit of Mediator complex
                     non-fungal; pfam09606"
                     /db_xref="CDD:312941"
     Region          2015..2119
                     /region_name="Creb_binding"
                     /note="Creb binding; pfam09030"
                     /db_xref="CDD:462659"
     CDS             1..2453
                     /gene="EP300"
                     /coded_by="XM_054069930.1:337..7698"
                     /db_xref="GeneID:104055501"
ORIGIN      
        1 maenvvepgp psakrpklss palsvsasdg tdfgspfdle hdlpdeliss telgltnggd
       61 inqlqtslgl aqdaaskhkq lsellragss pninmgvggp gqgmasqtqq nspgmgmlns
      121 mvkspmaqag ltspnmamga sgpnqgpsaq stagmmptvn spvnqpgmgm ntgmnagmnp
      181 gmlaagngqg mmqgqvmngs igagrgrpnm pypnpgmgna gnllaetlqq gspqmggqag
      241 lrgpqpgamn kmgmmgnpnp ygqtysqntg qqigasglgp qmqnkaglqn slpqfpmdkk
      301 pvpaagmpnm gqqqaqqvqq agmgpaasqg mgsgaptadp ekrkliqqql vlllhahkcq
      361 rreqangevr qcnlphcrtm knvlnhmthc qagkscqvah cassrqiish wknctrhdcp
      421 vclplknagd krnqqsllgg aavglantgs vgvgqqttps inttsqidps sierayaalg
      481 ltyqgnqmqt qpqaqvknqq qgqspqglrp mnpmsanpmg vnggvgvqtp nllpdsmlhs
      541 tmnsqnpmms estsvaslga mptaqpsntg irkqwhedit qdlrnhlvhk lvqaifptpd
      601 paalkdrrme nlvayarkve gdmyesansr aeyyhllaek iykiqkelee krrtrlqkqn
      661 mipnapgmpq apmnqgpnmg qpqpgmsang plpdptlira nvpnqmmnrm qaqpgmnqfg
      721 qmnmqlspmg prqtsplqhp gqlsqagamn qmgfpsrmqq pgvgqpsgqs qflqqtqfpt
      781 sspgmntasm pmtqpgsqtp vsqaqitsts cpvnspamap gsqgshihcp plpqppmhrn
      841 spspvpsrtp tphhtppslg sqqqqasaaa attaptptpq amppgpqsqt mhppqrqtpt
      901 ppqaqlppqv qppvpvtpsa eqqqqplsqq sttasvptpt aplqpqhptt plsqpavsid
      961 gqvsnppsts stevnsqqav peqqqpplqe vkmeiktdeg epeqtdlqme eksevkaepv
     1021 aeeckpdpme qeekkseakt eipegeerpt tpatqsspaa gqskkkifkp eelrqalmpt
     1081 lealyrqdpe slpfrqpvdp qllgipdyfd ivknpmdlst ikrkldtgqy qepwqyvddi
     1141 wlmfnnawly nrktsrvyky csklaevfeq eidpvmqslg yccgrklefs pqtlccygkq
     1201 lctiprdaty ysyqnryhfc ekcfneiqge svslgddpsq pqttinkeqf skrkndtldp
     1261 elfveciecg rkmhqicvlh neiiwpsgfv cdgclkktgr trkenkfsak rlpatrlgtf
     1321 lenrvndflr rqnhpeagev tvrvvhasdk tvevkpgmka rfvdsgemae sfpyrtkalf
     1381 afeeidgvdl cffgmhvqey gsdcpppnqr rvyisyldsv hffrpkclrt avyheiligy
     1441 leyvkklgyt tghiwacpps egddyifhch ppdqkipkpk rlqewykkml dksvserivh
     1501 dykdifkqat edrltsakel pyfegdfwpn vleesikele qeeeerkree ntsnestdvs
     1561 kgdsknakkk nnkktsknks slsrgnkkkp gmpnvsndls qklyatmekh kevffvirli
     1621 agpaanslpp ivepdplipc dlmdgrdafl tlardkhlef sslrraqwst mcmlvelhtq
     1681 sqdrfvytcn eckhhvetrw hctvcedydl citcyntknh dhkmeklglg lddesnnqqt
     1741 attqspgdsr rlsiqrciqs lvhacqcrna ncslpscqkm krvvqhtkgc krktnggcpi
     1801 ckqlialccy hakhcqenkc pvpfclnikh klrqqqlqhr lqqaqmlrrr masmqrtgvv
     1861 gqqqglpspt patpttptgq qpptpqtpqp qpppqpasqp qpvppnsmpp ytmsrtqpps
     1921 avsqgkaggq vtpptppqpp qppvqgpppa avemamqiqr aaetqrqmaq vqifqrpiqh
     1981 qmpqmppmgm nppqigrgpg ghidqgmgpt gmqqqppwvq gglpqaqlqp gmqrpsmmsv
     2041 aqpgqpmnma pqpgmgqvpg aaqpkqpplp qaalqnllrt lrspsspmqq qqvlnilhsn
     2101 pqllaafikq raakyvgsqn pqgmtgqpgi pqgqpglqpq qamqgqqggv hpnpamqnmn
     2161 pmqagvqrps mpqqqpqqqp qqamagmnpq aqqmnmnhsg mapqfrdllm rrhqmieqqr
     2221 hqqqqqqqga gpalgpgman hnqfqqpqgv gypqqqqqqq qqqrmqhhmq qmqqgnmgqi
     2281 sqlpqamsae tgaslqqafq qrllqqqmgs paqpnpmspq qhmlpsqaqs phlqgqqlps
     2341 sltnqvrspq pvpsprpqsq pphsspsprm qpqpsphhvs pqtssphpgl vaaqanpmdq
     2401 ghfaspdqsa mlsqlasnpg maglhgtsat elglssensd lnsnlsqstl dih
//
LOCUS       XP_053925914            2423 aa            linear   VRT 09-MAR-2023
DEFINITION  histone acetyltransferase p300 isoform X3 [Cuculus canorus].
ACCESSION   XP_053925914
VERSION     XP_053925914.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069939.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2423
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2423
                     /product="histone acetyltransferase p300 isoform X3"
                     /calculated_mol_wt=265600
     Region          87..>294
                     /region_name="Med15"
                     /note="ARC105 or Med15 subunit of Mediator complex
                     non-fungal; pfam09606"
                     /db_xref="CDD:312941"
     Region          355..422
                     /region_name="zf-TAZ"
                     /note="TAZ zinc finger; pfam02135"
                     /db_xref="CDD:460457"
     Region          570..650
                     /region_name="KIX"
                     /note="KIX domain; pfam02172"
                     /db_xref="CDD:366953"
     Region          <663..1066
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <709..828
                     /region_name="PABP-1234"
                     /note="polyadenylate binding protein, human types 1, 2, 3,
                     4 family; TIGR01628"
                     /db_xref="CDD:130689"
     Region          1040..1147
                     /region_name="Bromo_cbp_like"
                     /note="Bromodomain, cbp_like subfamily. Cbp (CREB binding
                     protein or CREBBP) is an acetyltransferase acting on
                     histone, which gives a specific tag for transcriptional
                     activation and also acetylates non-histone proteins.
                     CREBBP binds specifically to...; cd05495"
                     /db_xref="CDD:99927"
     Site            order(1068,1075,1078,1117,1121,1127)
                     /site_type="active"
                     /note="acetyllysine binding site [active]"
                     /db_xref="CDD:99927"
     Region          1159..1231
                     /region_name="RING_CBP-p300"
                     /note="atypical RING domain found in CREB-binding protein
                     and p300 histone acetyltransferases; cd15802"
                     /db_xref="CDD:276805"
     Site            order(1159,1162..1163,1229,1231)
                     /site_type="other"
                     /note="HAT interface [polypeptide binding]"
                     /db_xref="CDD:276805"
     Region          1232..1266
                     /region_name="PHD_p300"
                     /note="PHD finger found in histone acetyltransferase p300;
                     cd15646"
                     /db_xref="CDD:277116"
     Site            order(1232..1236,1240,1259)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277116"
     Region          1295..1601
                     /region_name="HAT_KAT11"
                     /note="Histone acetylation protein; pfam08214"
                     /db_xref="CDD:400497"
     Region          1657..1697
                     /region_name="ZZ_CBP"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     CBP/p300 and related proteins. The ZZ motif coordinates
                     two zinc ions and most likely participates in ligand
                     binding or molecular scaffolding. CREB-binding protein
                     (CBP) is a large multidomain protein that...; cd02337"
                     /db_xref="CDD:239077"
     Site            order(1659,1662,1672,1675,1681,1684,1690,1692)
                     /site_type="other"
                     /note="Zinc-binding sites [ion binding]"
                     /db_xref="CDD:239077"
     Site            order(1659,1662,1681,1684)
                     /site_type="other"
                     /note="zinc cluster 1 [ion binding]"
                     /db_xref="CDD:239077"
     Site            order(1660,1669,1671,1677,1679)
                     /site_type="active"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239077"
     Site            order(1670,1685,1694,1697)
                     /site_type="active"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239077"
     Site            order(1672,1675,1690,1692)
                     /site_type="other"
                     /note="zinc cluster 2 [ion binding]"
                     /db_xref="CDD:239077"
     Region          1724..1792
                     /region_name="zf-TAZ"
                     /note="TAZ zinc finger; pfam02135"
                     /db_xref="CDD:460457"
     Region          <1909..>2041
                     /region_name="PAT1"
                     /note="Topoisomerase II-associated protein PAT1;
                     pfam09770"
                     /db_xref="CDD:401645"
     Region          1983..>2387
                     /region_name="Med15"
                     /note="ARC105 or Med15 subunit of Mediator complex
                     non-fungal; pfam09606"
                     /db_xref="CDD:312941"
     Region          1985..2089
                     /region_name="Creb_binding"
                     /note="Creb binding; pfam09030"
                     /db_xref="CDD:462659"
     CDS             1..2423
                     /gene="EP300"
                     /coded_by="XM_054069939.1:337..7608"
                     /db_xref="GeneID:104055501"
ORIGIN      
        1 maenvvepgp psakrpklss palsvsasdg tdfgspfdle hdlpdeliss telgltnggd
       61 inqlqtslgl aqdaaskhkq lsellragss pninmgvggp gqgmasqtqq nspgmgmlns
      121 mvkspmaqag ltspnmamga sgpnqgpsaq stagmmptvn spvnqpgmgm ntgmnagmnp
      181 gmlaagngqg mmqgqvmngs igagrgrpnm pypnpgmgna gnllaetlqq gspqmggqag
      241 lrgpqpgamn kmgmmgnpnp ygqtysqntg qqigasglgp qmqnkaglqn slpqfpmdkk
      301 pvpaagmpnm gqqqaqqvqq agmgpaasqg mgsgaptadp ekrkliqqql vlllhahkcq
      361 rreqangevr qcnlphcrtm knvlnhmthc qagkscqvah cassrqiish wknctrhdcp
      421 vclplknagd krnqqsllgg aavglantgs vgvgqqttps inttsqidps sierayaalg
      481 ltyqgnqmqt qpqaqvknqq qgqspqglrp mnpmsanpmg vnggvgvqtp nllpdsmlhs
      541 tmnsqnpmms estsvaslga mptaqpsntg irkqwhedit qdlrnhlvhk lvqaifptpd
      601 paalkdrrme nlvayarkve gdmyesansr aeyyhllaek iykiqkelee krrtrlqkqn
      661 mipnapgmpq apmnqgpnmg qpqpgmsang plpdptlira nvpnqmmnrm qaqpgmnqfg
      721 qmnmqlspmg prqtsplqhp gqlsqagamn qqmgfpsrmq qpgvgqpsgq sqflqqtqfp
      781 tsspgmntas mpmtqpgsqt pvsqppmhrn spspvpsrtp tphhtppslg sqqqqasaaa
      841 attaptptpq amppgpqsqt mhppqrqtpt ppqaqlppqv qppvpvtpsa eqqqqplsqq
      901 sttasvptpt aplqpqhptt plsqpavsid gqvsnppsts stevnsqqav peqqqpplqe
      961 vkmeiktdeg epeqtdlqme eksevkaepv aeeckpdpme qeekkseakt eipegeerpt
     1021 tpatqsspaa gqskkkifkp eelrqalmpt lealyrqdpe slpfrqpvdp qllgipdyfd
     1081 ivknpmdlst ikrkldtgqy qepwqyvddi wlmfnnawly nrktsrvyky csklaevfeq
     1141 eidpvmqslg yccgrklefs pqtlccygkq lctiprdaty ysyqnryhfc ekcfneiqge
     1201 svslgddpsq pqttinkeqf skrkndtldp elfveciecg rkmhqicvlh neiiwpsgfv
     1261 cdgclkktgr trkenkfsak rlpatrlgtf lenrvndflr rqnhpeagev tvrvvhasdk
     1321 tvevkpgmka rfvdsgemae sfpyrtkalf afeeidgvdl cffgmhvqey gsdcpppnqr
     1381 rvyisyldsv hffrpkclrt avyheiligy leyvkklgyt tghiwacpps egddyifhch
     1441 ppdqkipkpk rlqewykkml dksvserivh dykdifkqat edrltsakel pyfegdfwpn
     1501 vleesikele qeeeerkree ntsnestdvs kgdsknakkk nnkktsknks slsrgnkkkp
     1561 gmpnvsndls qklyatmekh kevffvirli agpaanslpp ivepdplipc dlmdgrdafl
     1621 tlardkhlef sslrraqwst mcmlvelhtq sqdrfvytcn eckhhvetrw hctvcedydl
     1681 citcyntknh dhkmeklglg lddesnnqqt attqspgdsr rlsiqrciqs lvhacqcrna
     1741 ncslpscqkm krvvqhtkgc krktnggcpi ckqlialccy hakhcqenkc pvpfclnikh
     1801 klrqqqlqhr lqqaqmlrrr masmqrtgvv gqqqglpspt patpttptgq qpptpqtpqp
     1861 qpppqpasqp qpvppnsmpp ytmsrtqpps avsqgkaggq vtpptppqpp qppvqgpppa
     1921 avemamqiqr aaetqrqmaq vqifqrpiqh qmpqmppmgm nppqigrgpg ghidqgmgpt
     1981 gmqqqppwvq gglpqaqlqp gmqrpsmmsv aqpgqpmnma pqpgmgqvpg aaqpkqpplp
     2041 qaalqnllrt lrspsspmqq qqvlnilhsn pqllaafikq raakyvgsqn pqgmtgqpgi
     2101 pqgqpglqpq qamqgqqggv hpnpamqnmn pmqagvqrps mpqqqpqqqp qqamagmnpq
     2161 aqqmnmnhsg mapqfrdllm rrhqmieqqr hqqqqqqqga gpalgpgman hnqfqqpqgv
     2221 gypqqqqqqq qqqrmqhhmq qmqqgnmgqi sqlpqamsae tgaslqqafq qrllqqqmgs
     2281 paqpnpmspq qhmlpsqaqs phlqgqqlps sltnqvrspq pvpsprpqsq pphsspsprm
     2341 qpqpsphhvs pqtssphpgl vaaqanpmdq ghfaspdqsa mlsqlasnpg maglhgtsat
     2401 elglssensd lnsnlsqstl dih
//
LOCUS       XP_053925922            1597 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053925922
VERSION     XP_053925922.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069947.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1597
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1597
                     /product="roundabout homolog 2 isoform X1"
                     /calculated_mol_wt=174470
     Region          50..148
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          50..54
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(54,57,66,68,70,72,112..113)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          57..62
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          66..74
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          80..85
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          88..90
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          101..104
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          107..113
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          125..133
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          136..148
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          155..240
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          169..173
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          183..187
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          205..209
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          219..224
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          233..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          247..329
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          261..265
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          274..278
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          295..299
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          309..314
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          322..325
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          338..435
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          338..342
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          344..348
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          354..362
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          365..372
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          374..377
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          390..395
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          397..404
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          410..419
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          421..432
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          442..528
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          442..445
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          449..452
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          458..465
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          <464..879
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          471..476
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          478..480
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          487..491
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          494..499
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          507..515
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          518..528
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          546..639
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(546,611,626)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(627..628,630..631)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1597
                     /gene="ROBO2"
                     /coded_by="XM_054069947.1:441..5234"
                     /db_xref="GeneID:104056033"
ORIGIN      
        1 mlssvkkgki tmllfilmll fsgptlskls rtkgkhwkgg srlrqedfpp rivehpsdvi
       61 vskgepttln ckaegrptpt iewykdgerv etdkddprsh rmllpsgslf flrivhgrrs
      121 kpdegsyvcv arnylgeavs rnaslevall rddfrqnptd vvvaagepai lecqpprghp
      181 eptiywkkdk vriddreeri sirggklmis ntrksdagmy tcvgtnmvge rdsdpaeltv
      241 ferptflrrp inqvvleeea vdfrcqvqgd ptptvrwkkd dadlprgryd ikddytlrik
      301 kalstdegty tciaenrvgk veasatltvr arpvappqfv vrprdqivaq grtvtfpcet
      361 kgnpqpavfw qkegsqnllf pnqplqpnsr ysvsptgdlt itniqrsdag yyicqaltva
      421 gsilakaqle vtdvltdrpp piilqgpvnq tlavdgtall kckatgdplp viswlkegft
      481 flgrdprtsi qdqgtlqikn lrlsdtgtyt cvatsssget swsavlevte sggatvskny
      541 dindlpgpps kpqvtdvtkn svtlswqpgt pgslpasayi ieafsqsvsn swqtvanhvk
      601 ttlytvrglr pntiylfmvr ainsqglsdp spmsdpvrtq disppaqgvd hrqvqkelgd
      661 vivrlhnpvv ltpttvqvtw tvdrqsqfiq gyrvmyrqts glpspavwqn levkvpters
      721 avlvslkkgv tyeikvrpyf nefqgmdses ksartteeap sappqsvtvl tvgnhnstsi
      781 siswdppppd hqngviqeyk iwclgnetrf hinktvdaai rsvvigglyp giqyrvevaa
      841 stsagvgvks epqpiiiggr nevvitennn siteqitdvv kqpafiagig gacwvilmgf
      901 siwlywrrkk rkglsnyavt fqrgdgglms ngsrpgllna sdpsypwlad swpatslpvn
      961 nstsgpndlg nfgrgadvlp lvpgqgdkta tmlsdgaiys sidfttktsy nsssqitqat
     1021 pyattqilhs nsihelavdl pdpqwkssiq qkndlmgfgy slpdqgkgnn allyipdyrv
     1081 aeglanrlph nqsqdfstts shnssersgs lsggkggkkk knkntakpqk nngsnwasvp
     1141 lppppvqplp gtelehygvd qqeagydsdg wcpplpvqty lhqgmedele edddrvptpp
     1201 vrgvasspai sfgqqstatl tpspreemqp mlqahldelt rayqfdiakq twhiqsntqp
     1261 pqapvpplgy vsgnlisdle tdvpdddedd deddieeeti eisrplrgle htpgssmdnl
     1321 dssvtgsmvn gwgsasdedr nfsshrssvg sssddsifts gsfaqalvaa adkagfrldg
     1381 tsltrtgkay pssqrprpss pfstdsntsa avnqsqrprp tkkhkggrld qpplphrreg
     1441 itddlppppd pppgqglrqq ivpgqrggsa erkgsslerq hapnvdetks sldrqartsl
     1501 ewqrqtqewi ssterqedfr kaqhkqafgs eealvpyskp nfpspgghss sgtasskgst
     1561 gprkgevlrg ghqrnasdll dlgyvgsnsq gqftgel
//
LOCUS       XP_053925932            1596 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053925932
VERSION     XP_053925932.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069957.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1596
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1596
                     /product="roundabout homolog 2 isoform X2"
                     /calculated_mol_wt=174398
     Region          50..148
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          50..54
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(54,57,66,68,70,72,112..113)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          57..62
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          66..74
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          80..85
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          88..90
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          101..104
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          107..113
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          125..133
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          136..148
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          155..240
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          169..173
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          183..187
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          205..209
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          219..224
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          233..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          247..329
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          261..265
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          274..278
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          295..299
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          309..314
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          322..325
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          338..435
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          338..342
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          344..348
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          354..362
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          365..372
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          374..377
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          390..395
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          397..404
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          410..419
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          421..432
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          442..528
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          442..445
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          449..452
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          458..465
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          <464..879
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          471..476
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          478..480
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          487..491
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          494..499
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          507..515
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          518..528
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          546..639
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(546,611,626)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(627..628,630..631)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1596
                     /gene="ROBO2"
                     /coded_by="XM_054069957.1:438..5228"
                     /db_xref="GeneID:104056033"
ORIGIN      
        1 mlssvkkgki tmllfilmll fsgptlskls rtkgkhwkgg srlrqedfpp rivehpsdvi
       61 vskgepttln ckaegrptpt iewykdgerv etdkddprsh rmllpsgslf flrivhgrrs
      121 kpdegsyvcv arnylgeavs rnaslevall rddfrqnptd vvvaagepai lecqpprghp
      181 eptiywkkdk vriddreeri sirggklmis ntrksdagmy tcvgtnmvge rdsdpaeltv
      241 ferptflrrp inqvvleeea vdfrcqvqgd ptptvrwkkd dadlprgryd ikddytlrik
      301 kalstdegty tciaenrvgk veasatltvr arpvappqfv vrprdqivaq grtvtfpcet
      361 kgnpqpavfw qkegsqnllf pnqplqpnsr ysvsptgdlt itniqrsdag yyicqaltva
      421 gsilakaqle vtdvltdrpp piilqgpvnq tlavdgtall kckatgdplp viswlkegft
      481 flgrdprtsi qdqgtlqikn lrlsdtgtyt cvatsssget swsavlevte sggatvskny
      541 dindlpgpps kpqvtdvtkn svtlswqpgt pgslpasayi ieafsqsvsn swqtvanhvk
      601 ttlytvrglr pntiylfmvr ainsqglsdp spmsdpvrtq disppaqgvd hrqvqkelgd
      661 vivrlhnpvv ltpttvqvtw tvdrqsqfiq gyrvmyrqts glpspavwqn levkvpters
      721 avlvslkkgv tyeikvrpyf nefqgmdses ksartteeap sappqsvtvl tvgnhnstsi
      781 siswdppppd hqngviqeyk iwclgnetrf hinktvdaai rsvvigglyp giqyrvevaa
      841 stsagvgvks epqpiiiggr nevvitennn siteqitdvv kqpafiagig gacwvilmgf
      901 siwlywrrkk rkglsnyavt fqrgdgglms ngsrpgllna sdpsypwlad swpatslpvn
      961 nstsgpndlg nfgrgdvlpl vpgqgdktat mlsdgaiyss idfttktsyn sssqitqatp
     1021 yattqilhsn sihelavdlp dpqwkssiqq kndlmgfgys lpdqgkgnna llyipdyrva
     1081 eglanrlphn qsqdfsttss hnssersgsl sggkggkkkk nkntakpqkn ngsnwasvpl
     1141 ppppvqplpg telehygvdq qeagydsdgw cpplpvqtyl hqgmedelee dddrvptppv
     1201 rgvasspais fgqqstatlt pspreemqpm lqahldeltr ayqfdiakqt whiqsntqpp
     1261 qapvpplgyv sgnlisdlet dvpdddeddd eddieeetie isrplrgleh tpgssmdnld
     1321 ssvtgsmvng wgsasdedrn fsshrssvgs ssddsiftsg sfaqalvaaa dkagfrldgt
     1381 sltrtgkayp ssqrprpssp fstdsntsaa vnqsqrprpt kkhkggrldq pplphrregi
     1441 tddlppppdp ppgqglrqqi vpgqrggsae rkgsslerqh apnvdetkss ldrqartsle
     1501 wqrqtqewis sterqedfrk aqhkqafgse ealvpyskpn fpspgghsss gtasskgstg
     1561 prkgevlrgg hqrnasdlld lgyvgsnsqg qftgel
//
LOCUS       XP_053925940            1593 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053925940
VERSION     XP_053925940.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069965.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1593
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1593
                     /product="roundabout homolog 2 isoform X3"
                     /calculated_mol_wt=174046
     Region          50..148
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          50..54
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(54,57,66,68,70,72,112..113)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          57..62
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          66..74
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          80..85
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          88..90
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          101..104
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          107..113
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          125..133
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          136..148
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          155..240
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          169..173
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          183..187
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          205..209
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          219..224
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          233..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          247..329
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          261..265
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          274..278
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          295..299
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          309..314
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          322..325
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          334..431
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          334..338
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          340..344
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          350..358
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          361..368
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          370..373
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          386..391
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          393..400
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          406..415
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          417..428
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          438..524
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          438..441
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          445..448
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          454..461
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          <460..875
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          467..472
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          474..476
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          483..487
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          490..495
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          503..511
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          514..524
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          542..635
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(542,607,622)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(623..624,626..627)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1593
                     /gene="ROBO2"
                     /coded_by="XM_054069965.1:442..5223"
                     /db_xref="GeneID:104056033"
ORIGIN      
        1 mlssvkkgki tmllfilmll fsgptlskls rtkgkhwkgg srlrqedfpp rivehpsdvi
       61 vskgepttln ckaegrptpt iewykdgerv etdkddprsh rmllpsgslf flrivhgrrs
      121 kpdegsyvcv arnylgeavs rnaslevall rddfrqnptd vvvaagepai lecqpprghp
      181 eptiywkkdk vriddreeri sirggklmis ntrksdagmy tcvgtnmvge rdsdpaeltv
      241 ferptflrrp inqvvleeea vdfrcqvqgd ptptvrwkkd dadlprgryd ikddytlrik
      301 kalstdegty tciaenrvgk veasatltvr appqfvvrpr dqivaqgrtv tfpcetkgnp
      361 qpavfwqkeg sqnllfpnqp lqpnsrysvs ptgdltitni qrsdagyyic qaltvagsil
      421 akaqlevtdv ltdrpppiil qgpvnqtlav dgtallkcka tgdplpvisw lkegftflgr
      481 dprtsiqdqg tlqiknlrls dtgtytcvat sssgetswsa vlevtesgga tvsknydind
      541 lpgppskpqv tdvtknsvtl swqpgtpgsl pasayiieaf sqsvsnswqt vanhvkttly
      601 tvrglrpnti ylfmvrains qglsdpspms dpvrtqdisp paqgvdhrqv qkelgdvivr
      661 lhnpvvltpt tvqvtwtvdr qsqfiqgyrv myrqtsglps pavwqnlevk vptersavlv
      721 slkkgvtyei kvrpyfnefq gmdsesksar tteeapsapp qsvtvltvgn hnstsisisw
      781 dppppdhqng viqeykiwcl gnetrfhink tvdaairsvv igglypgiqy rvevaastsa
      841 gvgvksepqp iiiggrnevv itennnsite qitdvvkqpa fiagiggacw vilmgfsiwl
      901 ywrrkkrkgl snyavtfqrg dgglmsngsr pgllnasdps ypwladswpa tslpvnnsts
      961 gpndlgnfgr gadvlplvpg qgdktatmls dgaiyssidf ttktsynsss qitqatpyat
     1021 tqilhsnsih elavdlpdpq wkssiqqknd lmgfgyslpd qgkgnnally ipdyrvaegl
     1081 anrlphnqsq dfsttsshns sersgslsgg kggkkkknkn takpqknngs nwasvplppp
     1141 pvqplpgtel ehygvdqqea gydsdgwcpp lpvqtylhqg medeleeddd rvptppvrgv
     1201 asspaisfgq qstatltpsp reemqpmlqa hldeltrayq fdiakqtwhi qsntqppqap
     1261 vpplgyvsgn lisdletdvp dddedddedd ieeetieisr plrglehtpg ssmdnldssv
     1321 tgsmvngwgs asdedrnfss hrssvgsssd dsiftsgsfa qalvaaadka gfrldgtslt
     1381 rtgkaypssq rprpsspfst dsntsaavnq sqrprptkkh kggrldqppl phrregitdd
     1441 lppppdpppg qglrqqivpg qrggsaerkg sslerqhapn vdetkssldr qartslewqr
     1501 qtqewisste rqedfrkaqh kqafgseeal vpyskpnfps pgghsssgta sskgstgprk
     1561 gevlrgghqr nasdlldlgy vgsnsqgqft gel
//
LOCUS       XP_053925949            1592 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053925949
VERSION     XP_053925949.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069974.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1592
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1592
                     /product="roundabout homolog 2 isoform X4"
                     /calculated_mol_wt=173975
     Region          50..148
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          50..54
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(54,57,66,68,70,72,112..113)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          57..62
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          66..74
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          80..85
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          88..90
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          101..104
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          107..113
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          125..133
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          136..148
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          155..240
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          169..173
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          183..187
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          205..209
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          219..224
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          233..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          247..329
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          261..265
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          274..278
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          295..299
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          309..314
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          322..325
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          334..431
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          334..338
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          340..344
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          350..358
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          361..368
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          370..373
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          386..391
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          393..400
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          406..415
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          417..428
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          438..524
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          438..441
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          445..448
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          454..461
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          <460..875
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          467..472
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          474..476
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          483..487
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          490..495
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          503..511
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          514..524
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          542..635
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(542,607,622)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(623..624,626..627)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1592
                     /gene="ROBO2"
                     /coded_by="XM_054069974.1:440..5218"
                     /db_xref="GeneID:104056033"
ORIGIN      
        1 mlssvkkgki tmllfilmll fsgptlskls rtkgkhwkgg srlrqedfpp rivehpsdvi
       61 vskgepttln ckaegrptpt iewykdgerv etdkddprsh rmllpsgslf flrivhgrrs
      121 kpdegsyvcv arnylgeavs rnaslevall rddfrqnptd vvvaagepai lecqpprghp
      181 eptiywkkdk vriddreeri sirggklmis ntrksdagmy tcvgtnmvge rdsdpaeltv
      241 ferptflrrp inqvvleeea vdfrcqvqgd ptptvrwkkd dadlprgryd ikddytlrik
      301 kalstdegty tciaenrvgk veasatltvr appqfvvrpr dqivaqgrtv tfpcetkgnp
      361 qpavfwqkeg sqnllfpnqp lqpnsrysvs ptgdltitni qrsdagyyic qaltvagsil
      421 akaqlevtdv ltdrpppiil qgpvnqtlav dgtallkcka tgdplpvisw lkegftflgr
      481 dprtsiqdqg tlqiknlrls dtgtytcvat sssgetswsa vlevtesgga tvsknydind
      541 lpgppskpqv tdvtknsvtl swqpgtpgsl pasayiieaf sqsvsnswqt vanhvkttly
      601 tvrglrpnti ylfmvrains qglsdpspms dpvrtqdisp paqgvdhrqv qkelgdvivr
      661 lhnpvvltpt tvqvtwtvdr qsqfiqgyrv myrqtsglps pavwqnlevk vptersavlv
      721 slkkgvtyei kvrpyfnefq gmdsesksar tteeapsapp qsvtvltvgn hnstsisisw
      781 dppppdhqng viqeykiwcl gnetrfhink tvdaairsvv igglypgiqy rvevaastsa
      841 gvgvksepqp iiiggrnevv itennnsite qitdvvkqpa fiagiggacw vilmgfsiwl
      901 ywrrkkrkgl snyavtfqrg dgglmsngsr pgllnasdps ypwladswpa tslpvnnsts
      961 gpndlgnfgr gdvlplvpgq gdktatmlsd gaiyssidft tktsynsssq itqatpyatt
     1021 qilhsnsihe lavdlpdpqw kssiqqkndl mgfgyslpdq gkgnnallyi pdyrvaegla
     1081 nrlphnqsqd fsttsshnss ersgslsggk ggkkkknknt akpqknngsn wasvplpppp
     1141 vqplpgtele hygvdqqeag ydsdgwcppl pvqtylhqgm edeleedddr vptppvrgva
     1201 sspaisfgqq statltpspr eemqpmlqah ldeltrayqf diakqtwhiq sntqppqapv
     1261 pplgyvsgnl isdletdvpd ddedddeddi eeetieisrp lrglehtpgs smdnldssvt
     1321 gsmvngwgsa sdedrnfssh rssvgsssdd siftsgsfaq alvaaadkag frldgtsltr
     1381 tgkaypssqr prpsspfstd sntsaavnqs qrprptkkhk ggrldqpplp hrregitddl
     1441 ppppdpppgq glrqqivpgq rggsaerkgs slerqhapnv detkssldrq artslewqrq
     1501 tqewisster qedfrkaqhk qafgseealv pyskpnfpsp gghsssgtas skgstgprkg
     1561 evlrgghqrn asdlldlgyv gsnsqgqftg el
//
LOCUS       XP_053925955            1576 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 2 isoform X5 [Cuculus canorus].
ACCESSION   XP_053925955
VERSION     XP_053925955.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069980.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1576
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1576
                     /product="roundabout homolog 2 isoform X5"
                     /calculated_mol_wt=172094
     Region          29..127
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          29..33
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(33,36,45,47,49,51,91..92)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          36..41
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          45..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          59..64
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          67..69
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          80..83
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          86..92
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          104..112
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          115..127
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          134..219
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          148..152
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          162..166
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          184..188
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          198..203
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          212..215
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          226..308
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          240..244
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          253..257
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          274..278
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          288..293
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          301..304
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          317..414
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          317..321
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          323..327
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          333..341
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          344..351
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          353..356
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          369..374
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          376..383
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          389..398
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          400..411
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          421..507
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          421..424
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          428..431
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          437..444
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          <443..858
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          450..455
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          457..459
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          466..470
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          473..478
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          486..494
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          497..507
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          525..618
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(525,590,605)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(606..607,609..610)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1576
                     /gene="ROBO2"
                     /coded_by="XM_054069980.1:825..5555"
                     /db_xref="GeneID:104056033"
ORIGIN      
        1 mglltplllf gfafaqvygs rlrqedfppr ivehpsdviv skgepttlnc kaegrptpti
       61 ewykdgerve tdkddprshr mllpsgslff lrivhgrrsk pdegsyvcva rnylgeavsr
      121 naslevallr ddfrqnptdv vvaagepail ecqpprghpe ptiywkkdkv riddreeris
      181 irggklmisn trksdagmyt cvgtnmvger dsdpaeltvf erptflrrpi nqvvleeeav
      241 dfrcqvqgdp tptvrwkkdd adlprgrydi kddytlrikk alstdegtyt ciaenrvgkv
      301 easatltvra rpvappqfvv rprdqivaqg rtvtfpcetk gnpqpavfwq kegsqnllfp
      361 nqplqpnsry svsptgdlti tniqrsdagy yicqaltvag silakaqlev tdvltdrppp
      421 iilqgpvnqt lavdgtallk ckatgdplpv iswlkegftf lgrdprtsiq dqgtlqiknl
      481 rlsdtgtytc vatsssgets wsavlevtes ggatvsknyd indlpgppsk pqvtdvtkns
      541 vtlswqpgtp gslpasayii eafsqsvsns wqtvanhvkt tlytvrglrp ntiylfmvra
      601 insqglsdps pmsdpvrtqd isppaqgvdh rqvqkelgdv ivrlhnpvvl tpttvqvtwt
      661 vdrqsqfiqg yrvmyrqtsg lpspavwqnl evkvptersa vlvslkkgvt yeikvrpyfn
      721 efqgmdsesk sartteeaps appqsvtvlt vgnhnstsis iswdppppdh qngviqeyki
      781 wclgnetrfh inktvdaair svvigglypg iqyrvevaas tsagvgvkse pqpiiiggrn
      841 evvitennns iteqitdvvk qpafiagigg acwvilmgfs iwlywrrkkr kglsnyavtf
      901 qrgdgglmsn gsrpgllnas dpsypwlads wpatslpvnn stsgpndlgn fgrgadvlpl
      961 vpgqgdktat mlsdgaiyss idfttktsyn sssqitqatp yattqilhsn sihelavdlp
     1021 dpqwkssiqq kndlmgfgys lpdqgkgnna llyipdyrva eglanrlphn qsqdfsttss
     1081 hnssersgsl sggkggkkkk nkntakpqkn ngsnwasvpl ppppvqplpg telehygvdq
     1141 qeagydsdgw cpplpvqtyl hqgmedelee dddrvptppv rgvasspais fgqqstatlt
     1201 pspreemqpm lqahldeltr ayqfdiakqt whiqsntqpp qapvpplgyv sgnlisdlet
     1261 dvpdddeddd eddieeetie isrplrgleh tpgssmdnld ssvtgsmvng wgsasdedrn
     1321 fsshrssvgs ssddsiftsg sfaqalvaaa dkagfrldgt sltrtgkayp ssqrprpssp
     1381 fstdsntsaa vnqsqrprpt kkhkggrldq pplphrregi tddlppppdp ppgqglrqqi
     1441 vpgqrggsae rkgsslerqh apnvdetkss ldrqartsle wqrqtqewis sterqedfrk
     1501 aqhkqafgse ealvpyskpn fpspgghsss gtasskgstg prkgevlrgg hqrnasdlld
     1561 lgyvgsnsqg qftgel
//
LOCUS       XP_053925964            1565 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 2 isoform X6 [Cuculus canorus].
ACCESSION   XP_053925964
VERSION     XP_053925964.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069989.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1565
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1565
                     /product="roundabout homolog 2 isoform X6"
                     /calculated_mol_wt=171141
     Region          50..148
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          50..54
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(54,57,66,68,70,72,112..113)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          57..62
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          66..74
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          80..85
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          88..90
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          101..104
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          107..113
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          125..133
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          136..148
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          155..240
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          169..173
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          183..187
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          205..209
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          219..224
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          233..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          247..329
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          261..265
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          274..278
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          295..299
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          309..314
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          322..325
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          338..435
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          338..342
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          344..348
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          354..362
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          365..372
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          374..377
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          390..395
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          397..404
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          410..419
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          421..432
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          442..528
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          442..445
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          449..452
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          458..465
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          <464..879
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          471..476
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          478..480
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          487..491
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          494..499
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          507..515
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          518..528
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          546..639
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(546,611,626)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(627..628,630..631)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1565
                     /gene="ROBO2"
                     /coded_by="XM_054069989.1:439..5136"
                     /db_xref="GeneID:104056033"
ORIGIN      
        1 mlssvkkgki tmllfilmll fsgptlskls rtkgkhwkgg srlrqedfpp rivehpsdvi
       61 vskgepttln ckaegrptpt iewykdgerv etdkddprsh rmllpsgslf flrivhgrrs
      121 kpdegsyvcv arnylgeavs rnaslevall rddfrqnptd vvvaagepai lecqpprghp
      181 eptiywkkdk vriddreeri sirggklmis ntrksdagmy tcvgtnmvge rdsdpaeltv
      241 ferptflrrp inqvvleeea vdfrcqvqgd ptptvrwkkd dadlprgryd ikddytlrik
      301 kalstdegty tciaenrvgk veasatltvr arpvappqfv vrprdqivaq grtvtfpcet
      361 kgnpqpavfw qkegsqnllf pnqplqpnsr ysvsptgdlt itniqrsdag yyicqaltva
      421 gsilakaqle vtdvltdrpp piilqgpvnq tlavdgtall kckatgdplp viswlkegft
      481 flgrdprtsi qdqgtlqikn lrlsdtgtyt cvatsssget swsavlevte sggatvskny
      541 dindlpgpps kpqvtdvtkn svtlswqpgt pgslpasayi ieafsqsvsn swqtvanhvk
      601 ttlytvrglr pntiylfmvr ainsqglsdp spmsdpvrtq disppaqgvd hrqvqkelgd
      661 vivrlhnpvv ltpttvqvtw tvdrqsqfiq gyrvmyrqts glpspavwqn levkvpters
      721 avlvslkkgv tyeikvrpyf nefqgmdses ksartteeap sappqsvtvl tvgnhnstsi
      781 siswdppppd hqngviqeyk iwclgnetrf hinktvdaai rsvvigglyp giqyrvevaa
      841 stsagvgvks epqpiiiggr nevvitennn siteqitdvv kqpafiagig gacwvilmgf
      901 siwlywrrkk rkglsnyavt fqrgdgglms ngsrpgllna sdpsypwlad swpatslpvn
      961 nstsgpndlg nfgrgadvlp lvpgqgdkta tmlsdgaiys sidfttktsy nsssqitqat
     1021 pyattqilhs nsihelavdl pdpqwkssiq qkndlmgfgy slpdqgkgnn allyipdyrv
     1081 aeglanrlph nqsqdfstts shnssersgs lsggkggkkk knkntakpqk nngsnwasvp
     1141 lppppvqplp gtelehygvd qqeagydsdg wcpplpvqty lhqgmedele edddrvptpp
     1201 vrgvasspai sfgqqstatl tpspreemqp mlqahldelt rayqfdiakq twhiqsntqp
     1261 pqapvpplgy vsgnlisdle tdvpdddedd deddieeeti eisrplrgle htpgssmdnl
     1321 dssvtgsmvn gwgsasdedr nfsshrssvg sssddsifts gsfaqalvaa adkagfrldg
     1381 tsltrtgkay pssqrprpss pfstdsntsa avnqsqrprp tkkhkggrld qpplphrreg
     1441 itddlppppd pppgqglrqq ivpgqrggsa erkgsslerq hapnvdetks sldrqartsl
     1501 ewqrqtqewi ssterqedfr kaqhkqafgs eealvpyskp nfpspgghss sgtasskgst
     1561 gprke
//
LOCUS       XP_053925974            1555 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 2 isoform X7 [Cuculus canorus].
ACCESSION   XP_053925974
VERSION     XP_053925974.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054069999.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1555
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1555
                     /product="roundabout homolog 2 isoform X7"
                     /calculated_mol_wt=169881
     Region          50..148
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          50..54
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(54,57,66,68,70,72,112..113)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          57..62
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          66..74
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          80..85
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          88..90
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          101..104
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          107..113
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          125..133
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          136..148
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          155..240
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          169..173
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          183..187
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          205..209
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          219..224
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          233..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          247..329
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          261..265
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          274..278
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          295..299
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          309..314
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          322..325
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          338..435
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          338..342
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          344..348
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          354..362
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          365..372
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          374..377
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          390..395
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          397..404
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          410..419
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          421..432
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          442..528
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          442..445
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          449..452
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          458..465
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          <464..879
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          471..476
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          478..480
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          487..491
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          494..499
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          507..515
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          518..528
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          546..639
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(546,611,626)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(627..628,630..631)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1555
                     /gene="ROBO2"
                     /coded_by="XM_054069999.1:440..5107"
                     /db_xref="GeneID:104056033"
ORIGIN      
        1 mlssvkkgki tmllfilmll fsgptlskls rtkgkhwkgg srlrqedfpp rivehpsdvi
       61 vskgepttln ckaegrptpt iewykdgerv etdkddprsh rmllpsgslf flrivhgrrs
      121 kpdegsyvcv arnylgeavs rnaslevall rddfrqnptd vvvaagepai lecqpprghp
      181 eptiywkkdk vriddreeri sirggklmis ntrksdagmy tcvgtnmvge rdsdpaeltv
      241 ferptflrrp inqvvleeea vdfrcqvqgd ptptvrwkkd dadlprgryd ikddytlrik
      301 kalstdegty tciaenrvgk veasatltvr arpvappqfv vrprdqivaq grtvtfpcet
      361 kgnpqpavfw qkegsqnllf pnqplqpnsr ysvsptgdlt itniqrsdag yyicqaltva
      421 gsilakaqle vtdvltdrpp piilqgpvnq tlavdgtall kckatgdplp viswlkegft
      481 flgrdprtsi qdqgtlqikn lrlsdtgtyt cvatsssget swsavlevte sggatvskny
      541 dindlpgpps kpqvtdvtkn svtlswqpgt pgslpasayi ieafsqsvsn swqtvanhvk
      601 ttlytvrglr pntiylfmvr ainsqglsdp spmsdpvrtq disppaqgvd hrqvqkelgd
      661 vivrlhnpvv ltpttvqvtw tvdrqsqfiq gyrvmyrqts glpspavwqn levkvpters
      721 avlvslkkgv tyeikvrpyf nefqgmdses ksartteeap sappqsvtvl tvgnhnstsi
      781 siswdppppd hqngviqeyk iwclgnetrf hinktvdaai rsvvigglyp giqyrvevaa
      841 stsagvgvks epqpiiiggr nevvitennn siteqitdvv kqpafiagig gacwvilmgf
      901 siwlywrrkk rkglsnyavt fqrgdgglms ngsrpgllna sdpsypwlad swpatslpvn
      961 nstsgpndlg nfgrgadvlp lvpgqgdkta tmlsdgaiys sidfttktsy nsssqitqat
     1021 pyattqilhs nsihelavdl pdpqwkssiq qkndlmgfgy slpdqgkgnn ggkggkkkkn
     1081 kntakpqknn gsnwasvplp pppvqplpgt elehygvdqq eagydsdgwc pplpvqtylh
     1141 qgmedeleed ddrvptppvr gvasspaisf gqqstatltp spreemqpml qahldeltra
     1201 yqfdiakqtw hiqsntqppq apvpplgyvs gnlisdletd vpdddeddde ddieeetiei
     1261 srplrgleht pgssmdnlds svtgsmvngw gsasdedrnf sshrssvgss sddsiftsgs
     1321 faqalvaaad kagfrldgts ltrtgkayps sqrprpsspf stdsntsaav nqsqrprptk
     1381 khkggrldqp plphrregit ddlppppdpp pgqglrqqiv pgqrggsaer kgsslerqha
     1441 pnvdetkssl drqartslew qrqtqewiss terqedfrka qhkqafgsee alvpyskpnf
     1501 pspgghsssg tasskgstgp rkgevlrggh qrnasdlldl gyvgsnsqgq ftgel
//
LOCUS       XP_053925985            1554 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 2 isoform X8 [Cuculus canorus].
ACCESSION   XP_053925985
VERSION     XP_053925985.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070010.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1554
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1554
                     /product="roundabout homolog 2 isoform X8"
                     /calculated_mol_wt=169810
     Region          50..148
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          50..54
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(54,57,66,68,70,72,112..113)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          57..62
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          66..74
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          80..85
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          88..90
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          101..104
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          107..113
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          125..133
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          136..148
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          155..240
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          169..173
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          183..187
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          205..209
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          219..224
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          233..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          247..329
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          261..265
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          274..278
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          295..299
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          309..314
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          322..325
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          338..435
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          338..342
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          344..348
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          354..362
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          365..372
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          374..377
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          390..395
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          397..404
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          410..419
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          421..432
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          442..528
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          442..445
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          449..452
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          458..465
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          <464..879
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          471..476
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          478..480
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          487..491
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          494..499
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          507..515
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          518..528
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          546..639
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(546,611,626)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(627..628,630..631)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1554
                     /gene="ROBO2"
                     /coded_by="XM_054070010.1:438..5102"
                     /db_xref="GeneID:104056033"
ORIGIN      
        1 mlssvkkgki tmllfilmll fsgptlskls rtkgkhwkgg srlrqedfpp rivehpsdvi
       61 vskgepttln ckaegrptpt iewykdgerv etdkddprsh rmllpsgslf flrivhgrrs
      121 kpdegsyvcv arnylgeavs rnaslevall rddfrqnptd vvvaagepai lecqpprghp
      181 eptiywkkdk vriddreeri sirggklmis ntrksdagmy tcvgtnmvge rdsdpaeltv
      241 ferptflrrp inqvvleeea vdfrcqvqgd ptptvrwkkd dadlprgryd ikddytlrik
      301 kalstdegty tciaenrvgk veasatltvr arpvappqfv vrprdqivaq grtvtfpcet
      361 kgnpqpavfw qkegsqnllf pnqplqpnsr ysvsptgdlt itniqrsdag yyicqaltva
      421 gsilakaqle vtdvltdrpp piilqgpvnq tlavdgtall kckatgdplp viswlkegft
      481 flgrdprtsi qdqgtlqikn lrlsdtgtyt cvatsssget swsavlevte sggatvskny
      541 dindlpgpps kpqvtdvtkn svtlswqpgt pgslpasayi ieafsqsvsn swqtvanhvk
      601 ttlytvrglr pntiylfmvr ainsqglsdp spmsdpvrtq disppaqgvd hrqvqkelgd
      661 vivrlhnpvv ltpttvqvtw tvdrqsqfiq gyrvmyrqts glpspavwqn levkvpters
      721 avlvslkkgv tyeikvrpyf nefqgmdses ksartteeap sappqsvtvl tvgnhnstsi
      781 siswdppppd hqngviqeyk iwclgnetrf hinktvdaai rsvvigglyp giqyrvevaa
      841 stsagvgvks epqpiiiggr nevvitennn siteqitdvv kqpafiagig gacwvilmgf
      901 siwlywrrkk rkglsnyavt fqrgdgglms ngsrpgllna sdpsypwlad swpatslpvn
      961 nstsgpndlg nfgrgdvlpl vpgqgdktat mlsdgaiyss idfttktsyn sssqitqatp
     1021 yattqilhsn sihelavdlp dpqwkssiqq kndlmgfgys lpdqgkgnng gkggkkkknk
     1081 ntakpqknng snwasvplpp ppvqplpgte lehygvdqqe agydsdgwcp plpvqtylhq
     1141 gmedeleedd drvptppvrg vasspaisfg qqstatltps preemqpmlq ahldeltray
     1201 qfdiakqtwh iqsntqppqa pvpplgyvsg nlisdletdv pdddeddded dieeetieis
     1261 rplrglehtp gssmdnldss vtgsmvngwg sasdedrnfs shrssvgsss ddsiftsgsf
     1321 aqalvaaadk agfrldgtsl trtgkaypss qrprpsspfs tdsntsaavn qsqrprptkk
     1381 hkggrldqpp lphrregitd dlppppdppp gqglrqqivp gqrggsaerk gsslerqhap
     1441 nvdetkssld rqartslewq rqtqewisst erqedfrkaq hkqafgseea lvpyskpnfp
     1501 spgghsssgt asskgstgpr kgevlrgghq rnasdlldlg yvgsnsqgqf tgel
//
LOCUS       XP_053925994            1536 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 2 isoform X9 [Cuculus canorus].
ACCESSION   XP_053925994
VERSION     XP_053925994.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070019.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1536
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1536
                     /product="roundabout homolog 2 isoform X9"
                     /calculated_mol_wt=168227
     Region          50..148
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          50..54
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(54,57,66,68,70,72,112..113)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          57..62
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          66..74
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          80..85
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          88..90
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          101..104
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          107..113
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          125..133
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          136..148
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          155..240
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          169..173
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          183..187
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          205..209
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          219..224
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          233..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          247..329
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          261..265
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          274..278
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          295..299
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          309..314
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          322..325
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          338..435
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          338..342
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          344..348
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          354..362
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          365..372
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          374..377
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          390..395
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          397..404
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          410..419
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          421..432
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          442..528
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          442..445
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          449..452
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          458..465
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          <464..879
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          471..476
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          478..480
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          487..491
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          494..499
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          507..515
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          518..528
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          546..639
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(546,611,626)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(627..628,630..631)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1536
                     /gene="ROBO2"
                     /coded_by="XM_054070019.1:436..5046"
                     /db_xref="GeneID:104056033"
ORIGIN      
        1 mlssvkkgki tmllfilmll fsgptlskls rtkgkhwkgg srlrqedfpp rivehpsdvi
       61 vskgepttln ckaegrptpt iewykdgerv etdkddprsh rmllpsgslf flrivhgrrs
      121 kpdegsyvcv arnylgeavs rnaslevall rddfrqnptd vvvaagepai lecqpprghp
      181 eptiywkkdk vriddreeri sirggklmis ntrksdagmy tcvgtnmvge rdsdpaeltv
      241 ferptflrrp inqvvleeea vdfrcqvqgd ptptvrwkkd dadlprgryd ikddytlrik
      301 kalstdegty tciaenrvgk veasatltvr arpvappqfv vrprdqivaq grtvtfpcet
      361 kgnpqpavfw qkegsqnllf pnqplqpnsr ysvsptgdlt itniqrsdag yyicqaltva
      421 gsilakaqle vtdvltdrpp piilqgpvnq tlavdgtall kckatgdplp viswlkegft
      481 flgrdprtsi qdqgtlqikn lrlsdtgtyt cvatsssget swsavlevte sggatvskny
      541 dindlpgpps kpqvtdvtkn svtlswqpgt pgslpasayi ieafsqsvsn swqtvanhvk
      601 ttlytvrglr pntiylfmvr ainsqglsdp spmsdpvrtq disppaqgvd hrqvqkelgd
      661 vivrlhnpvv ltpttvqvtw tvdrqsqfiq gyrvmyrqts glpspavwqn levkvpters
      721 avlvslkkgv tyeikvrpyf nefqgmdses ksartteeap sappqsvtvl tvgnhnstsi
      781 siswdppppd hqngviqeyk iwclgnetrf hinktvdaai rsvvigglyp giqyrvevaa
      841 stsagvgvks epqpiiiggr nevvitennn siteqitdvv kqpafiagig gacwvilmgf
      901 siwlywrrkk rkglsnyavt fqrgdgglms ngsrpgllna sdpsypwlad swpatslpvn
      961 nstsgpndlg nfgrgadvlp lvpgqgdkta tmlsdgaiys sidfttktsy nsssqitqat
     1021 pyattqilhs nsihelavdl pdpqwkssiq qkndlmgfgy slpdqgkgnn allyipdyrv
     1081 aeglanrlph nqsqdfstts shnssersgs lsggkggkkk knkntakpqk nngsnwasvp
     1141 lppppvqplp gtelehygvd qqeagydsdg wcpplpvqty lhqgmedele edddrvptpp
     1201 vrgvasspai sfgqqstatl tpspreemqp mlqahldelt rayqfdiakq twhiqsntqp
     1261 pqapvpplgy vsgnlisdle tdvpdddedd deddieeeti eisrplrgle htpgssmdnl
     1321 dssvtgkayp ssqrprpssp fstdsntsaa vnqsqrprpt kkhkggrldq pplphrregi
     1381 tddlppppdp ppgqglrqqi vpgqrggsae rkgsslerqh apnvdetkss ldrqartsle
     1441 wqrqtqewis sterqedfrk aqhkqafgse ealvpyskpn fpspgghsss gtasskgstg
     1501 prkgevlrgg hqrnasdlld lgyvgsnsqg qftgel
//
LOCUS       XP_053926004            1535 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 2 isoform X10 [Cuculus canorus].
ACCESSION   XP_053926004
VERSION     XP_053926004.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070029.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1535
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1535
                     /product="roundabout homolog 2 isoform X10"
                     /calculated_mol_wt=168156
     Region          50..148
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          50..54
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(54,57,66,68,70,72,112..113)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          57..62
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          66..74
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          80..85
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          88..90
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          101..104
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          107..113
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          125..133
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          136..148
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          155..240
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          169..173
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          183..187
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          205..209
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          219..224
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          233..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          247..329
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          261..265
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          274..278
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          295..299
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          309..314
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          322..325
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          338..435
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          338..342
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          344..348
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          354..362
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          365..372
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          374..377
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          390..395
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          397..404
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          410..419
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          421..432
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          442..528
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          442..445
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          449..452
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          458..465
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          <464..879
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          471..476
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          478..480
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          487..491
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          494..499
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          507..515
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          518..528
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          546..639
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(546,611,626)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(627..628,630..631)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1535
                     /gene="ROBO2"
                     /coded_by="XM_054070029.1:434..5041"
                     /db_xref="GeneID:104056033"
ORIGIN      
        1 mlssvkkgki tmllfilmll fsgptlskls rtkgkhwkgg srlrqedfpp rivehpsdvi
       61 vskgepttln ckaegrptpt iewykdgerv etdkddprsh rmllpsgslf flrivhgrrs
      121 kpdegsyvcv arnylgeavs rnaslevall rddfrqnptd vvvaagepai lecqpprghp
      181 eptiywkkdk vriddreeri sirggklmis ntrksdagmy tcvgtnmvge rdsdpaeltv
      241 ferptflrrp inqvvleeea vdfrcqvqgd ptptvrwkkd dadlprgryd ikddytlrik
      301 kalstdegty tciaenrvgk veasatltvr arpvappqfv vrprdqivaq grtvtfpcet
      361 kgnpqpavfw qkegsqnllf pnqplqpnsr ysvsptgdlt itniqrsdag yyicqaltva
      421 gsilakaqle vtdvltdrpp piilqgpvnq tlavdgtall kckatgdplp viswlkegft
      481 flgrdprtsi qdqgtlqikn lrlsdtgtyt cvatsssget swsavlevte sggatvskny
      541 dindlpgpps kpqvtdvtkn svtlswqpgt pgslpasayi ieafsqsvsn swqtvanhvk
      601 ttlytvrglr pntiylfmvr ainsqglsdp spmsdpvrtq disppaqgvd hrqvqkelgd
      661 vivrlhnpvv ltpttvqvtw tvdrqsqfiq gyrvmyrqts glpspavwqn levkvpters
      721 avlvslkkgv tyeikvrpyf nefqgmdses ksartteeap sappqsvtvl tvgnhnstsi
      781 siswdppppd hqngviqeyk iwclgnetrf hinktvdaai rsvvigglyp giqyrvevaa
      841 stsagvgvks epqpiiiggr nevvitennn siteqitdvv kqpafiagig gacwvilmgf
      901 siwlywrrkk rkglsnyavt fqrgdgglms ngsrpgllna sdpsypwlad swpatslpvn
      961 nstsgpndlg nfgrgdvlpl vpgqgdktat mlsdgaiyss idfttktsyn sssqitqatp
     1021 yattqilhsn sihelavdlp dpqwkssiqq kndlmgfgys lpdqgkgnna llyipdyrva
     1081 eglanrlphn qsqdfsttss hnssersgsl sggkggkkkk nkntakpqkn ngsnwasvpl
     1141 ppppvqplpg telehygvdq qeagydsdgw cpplpvqtyl hqgmedelee dddrvptppv
     1201 rgvasspais fgqqstatlt pspreemqpm lqahldeltr ayqfdiakqt whiqsntqpp
     1261 qapvpplgyv sgnlisdlet dvpdddeddd eddieeetie isrplrgleh tpgssmdnld
     1321 ssvtgkayps sqrprpsspf stdsntsaav nqsqrprptk khkggrldqp plphrregit
     1381 ddlppppdpp pgqglrqqiv pgqrggsaer kgsslerqha pnvdetkssl drqartslew
     1441 qrqtqewiss terqedfrka qhkqafgsee alvpyskpnf pspgghsssg tasskgstgp
     1501 rkgevlrggh qrnasdlldl gyvgsnsqgq ftgel
//
LOCUS       XP_053926010            1531 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 2 isoform X11 [Cuculus canorus].
ACCESSION   XP_053926010
VERSION     XP_053926010.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070035.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1531
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1531
                     /product="roundabout homolog 2 isoform X11"
                     /calculated_mol_wt=167732
     Region          50..148
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          50..54
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(54,57,66,68,70,72,112..113)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          57..62
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          66..74
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          80..85
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          88..90
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          101..104
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          107..113
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          125..133
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          136..148
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          155..240
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          169..173
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          183..187
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          205..209
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          219..224
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          233..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          247..329
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          261..265
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          274..278
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          295..299
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          309..314
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          322..325
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          334..431
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          334..338
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          340..344
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          350..358
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          361..368
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          370..373
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          386..391
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          393..400
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          406..415
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          417..428
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          438..524
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          438..441
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          445..448
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          454..461
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          <460..875
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          467..472
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          474..476
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          483..487
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          490..495
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          503..511
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          514..524
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          542..635
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(542,607,622)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(623..624,626..627)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1531
                     /gene="ROBO2"
                     /coded_by="XM_054070035.1:435..5030"
                     /db_xref="GeneID:104056033"
ORIGIN      
        1 mlssvkkgki tmllfilmll fsgptlskls rtkgkhwkgg srlrqedfpp rivehpsdvi
       61 vskgepttln ckaegrptpt iewykdgerv etdkddprsh rmllpsgslf flrivhgrrs
      121 kpdegsyvcv arnylgeavs rnaslevall rddfrqnptd vvvaagepai lecqpprghp
      181 eptiywkkdk vriddreeri sirggklmis ntrksdagmy tcvgtnmvge rdsdpaeltv
      241 ferptflrrp inqvvleeea vdfrcqvqgd ptptvrwkkd dadlprgryd ikddytlrik
      301 kalstdegty tciaenrvgk veasatltvr appqfvvrpr dqivaqgrtv tfpcetkgnp
      361 qpavfwqkeg sqnllfpnqp lqpnsrysvs ptgdltitni qrsdagyyic qaltvagsil
      421 akaqlevtdv ltdrpppiil qgpvnqtlav dgtallkcka tgdplpvisw lkegftflgr
      481 dprtsiqdqg tlqiknlrls dtgtytcvat sssgetswsa vlevtesgga tvsknydind
      541 lpgppskpqv tdvtknsvtl swqpgtpgsl pasayiieaf sqsvsnswqt vanhvkttly
      601 tvrglrpnti ylfmvrains qglsdpspms dpvrtqdisp paqgvdhrqv qkelgdvivr
      661 lhnpvvltpt tvqvtwtvdr qsqfiqgyrv myrqtsglps pavwqnlevk vptersavlv
      721 slkkgvtyei kvrpyfnefq gmdsesksar tteeapsapp qsvtvltvgn hnstsisisw
      781 dppppdhqng viqeykiwcl gnetrfhink tvdaairsvv igglypgiqy rvevaastsa
      841 gvgvksepqp iiiggrnevv itennnsite qitdvvkqpa fiagiggacw vilmgfsiwl
      901 ywrrkkrkgl snyavtfqrg dgglmsngsr pgllnasdps ypwladswpa tslpvnnsts
      961 gpndlgnfgr gdvlplvpgq gdktatmlsd gaiyssidft tktsynsssq itqatpyatt
     1021 qilhsnsihe lavdlpdpqw kssiqqkndl mgfgyslpdq gkgnnallyi pdyrvaegla
     1081 nrlphnqsqd fsttsshnss ersgslsggk ggkkkknknt akpqknngsn wasvplpppp
     1141 vqplpgtele hygvdqqeag ydsdgwcppl pvqtylhqgm edeleedddr vptppvrgva
     1201 sspaisfgqq statltpspr eemqpmlqah ldeltrayqf diakqtwhiq sntqppqapv
     1261 pplgyvsgnl isdletdvpd ddedddeddi eeetieisrp lrglehtpgs smdnldssvt
     1321 gkaypssqrp rpsspfstds ntsaavnqsq rprptkkhkg grldqpplph rregitddlp
     1381 pppdpppgqg lrqqivpgqr ggsaerkgss lerqhapnvd etkssldrqa rtslewqrqt
     1441 qewissterq edfrkaqhkq afgseealvp yskpnfpspg ghsssgtass kgstgprkge
     1501 vlrgghqrna sdlldlgyvg snsqgqftge l
//
LOCUS       XP_053926015            1510 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 2 isoform X12 [Cuculus canorus].
ACCESSION   XP_053926015
VERSION     XP_053926015.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070040.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1510
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1510
                     /product="roundabout homolog 2 isoform X12"
                     /calculated_mol_wt=164672
     Region          50..148
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          50..54
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(54,57,66,68,70,72,112..113)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          57..62
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          66..74
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          80..85
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          88..90
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          101..104
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          107..113
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          125..133
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          136..148
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          155..240
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          169..173
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          183..187
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          205..209
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          219..224
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          233..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          247..329
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          261..265
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          274..278
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          295..299
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          309..314
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          322..325
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          338..435
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          338..342
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          344..348
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          354..362
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          365..372
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          374..377
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          390..395
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          397..404
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          410..419
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          421..432
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          442..528
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          442..445
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          449..452
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          458..465
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          <464..879
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          471..476
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          478..480
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          487..491
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          494..499
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          507..515
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          518..528
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          546..639
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(546,611,626)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(627..628,630..631)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1510
                     /gene="ROBO2"
                     /coded_by="XM_054070040.1:442..4974"
                     /db_xref="GeneID:104056033"
ORIGIN      
        1 mlssvkkgki tmllfilmll fsgptlskls rtkgkhwkgg srlrqedfpp rivehpsdvi
       61 vskgepttln ckaegrptpt iewykdgerv etdkddprsh rmllpsgslf flrivhgrrs
      121 kpdegsyvcv arnylgeavs rnaslevall rddfrqnptd vvvaagepai lecqpprghp
      181 eptiywkkdk vriddreeri sirggklmis ntrksdagmy tcvgtnmvge rdsdpaeltv
      241 ferptflrrp inqvvleeea vdfrcqvqgd ptptvrwkkd dadlprgryd ikddytlrik
      301 kalstdegty tciaenrvgk veasatltvr arpvappqfv vrprdqivaq grtvtfpcet
      361 kgnpqpavfw qkegsqnllf pnqplqpnsr ysvsptgdlt itniqrsdag yyicqaltva
      421 gsilakaqle vtdvltdrpp piilqgpvnq tlavdgtall kckatgdplp viswlkegft
      481 flgrdprtsi qdqgtlqikn lrlsdtgtyt cvatsssget swsavlevte sggatvskny
      541 dindlpgpps kpqvtdvtkn svtlswqpgt pgslpasayi ieafsqsvsn swqtvanhvk
      601 ttlytvrglr pntiylfmvr ainsqglsdp spmsdpvrtq disppaqgvd hrqvqkelgd
      661 vivrlhnpvv ltpttvqvtw tvdrqsqfiq gyrvmyrqts glpspavwqn levkvpters
      721 avlvslkkgv tyeikvrpyf nefqgmdses ksartteeap sappqsvtvl tvgnhnstsi
      781 siswdppppd hqngviqeyk iwclgnetrf hinktvdaai rsvvigglyp giqyrvevaa
      841 stsagvgvks epqpiiiggr nevvitennn siteqitdvv kqpafiagig gacwvilmgf
      901 siwlywrrkk rkglsnyavt fqrgdgglms ngsrpgllna sdpsypwlad swpatslpvn
      961 nstsgpndlg nfgrgadvlp lvpgqgdkta tmlsdgaiys sidfttktsy nsssqitqat
     1021 pyattqilhs nsihelavdl pdpqwkssiq qkndlmgfgy slpdqgkgnn allyipdyrv
     1081 aeglanrlph nqsqdfstts shnssersgs lsggkggkkk knkntakpqk nngsnwasvp
     1141 lppppvqplp gtelehygvd qqeagydsdg wcpplpvqty lhqgmedele edddrvptpp
     1201 vrgvasspai sfgqqstatl tpspreemqp mlqahldelt rayqfdiakq twhiqsntqp
     1261 pqapvpplgy vsgnlisdle tdvpdddedd deddieeeti eisrplrgle htpgssmdnl
     1321 dssvtgsmvn gwgsasdedr nfsshrssvg sssddsifts gsfaqalvaa adkagfrldg
     1381 tsltrtgkay pssqrprpss pfstdsntsa avnqsqrprp tkkhkggrld qpplphrreg
     1441 itdeealvpy skpnfpspgg hsssgtassk gstgprkgev lrgghqrnas dlldlgyvgs
     1501 nsqgqftgel
//
LOCUS       XP_053926025            1493 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 2 isoform X13 [Cuculus canorus].
ACCESSION   XP_053926025
VERSION     XP_053926025.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070050.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1493
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1493
                     /product="roundabout homolog 2 isoform X13"
                     /calculated_mol_wt=163567
     Region          50..148
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          50..54
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(54,57,66,68,70,72,112..113)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          57..62
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          66..74
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          80..85
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          88..90
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          101..104
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          107..113
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          125..133
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          136..148
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          155..240
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          169..173
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          183..187
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          205..209
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          219..224
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          233..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          247..329
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          261..265
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          274..278
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          295..299
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          309..314
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          322..325
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          338..435
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          338..342
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          344..348
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          354..362
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          365..372
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          374..377
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          390..395
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          397..404
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          410..419
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          421..432
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          442..528
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          442..445
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          449..452
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          458..465
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          <464..879
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          471..476
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          478..480
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          487..491
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          494..499
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          507..515
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          518..528
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          546..639
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(546,611,626)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(627..628,630..631)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1493
                     /gene="ROBO2"
                     /coded_by="XM_054070050.1:434..4915"
                     /db_xref="GeneID:104056033"
ORIGIN      
        1 mlssvkkgki tmllfilmll fsgptlskls rtkgkhwkgg srlrqedfpp rivehpsdvi
       61 vskgepttln ckaegrptpt iewykdgerv etdkddprsh rmllpsgslf flrivhgrrs
      121 kpdegsyvcv arnylgeavs rnaslevall rddfrqnptd vvvaagepai lecqpprghp
      181 eptiywkkdk vriddreeri sirggklmis ntrksdagmy tcvgtnmvge rdsdpaeltv
      241 ferptflrrp inqvvleeea vdfrcqvqgd ptptvrwkkd dadlprgryd ikddytlrik
      301 kalstdegty tciaenrvgk veasatltvr arpvappqfv vrprdqivaq grtvtfpcet
      361 kgnpqpavfw qkegsqnllf pnqplqpnsr ysvsptgdlt itniqrsdag yyicqaltva
      421 gsilakaqle vtdvltdrpp piilqgpvnq tlavdgtall kckatgdplp viswlkegft
      481 flgrdprtsi qdqgtlqikn lrlsdtgtyt cvatsssget swsavlevte sggatvskny
      541 dindlpgpps kpqvtdvtkn svtlswqpgt pgslpasayi ieafsqsvsn swqtvanhvk
      601 ttlytvrglr pntiylfmvr ainsqglsdp spmsdpvrtq disppaqgvd hrqvqkelgd
      661 vivrlhnpvv ltpttvqvtw tvdrqsqfiq gyrvmyrqts glpspavwqn levkvpters
      721 avlvslkkgv tyeikvrpyf nefqgmdses ksartteeap sappqsvtvl tvgnhnstsi
      781 siswdppppd hqngviqeyk iwclgnetrf hinktvdaai rsvvigglyp giqyrvevaa
      841 stsagvgvks epqpiiiggr nevvitennn siteqitdvv kqpafiagig gacwvilmgf
      901 siwlywrrkk rkglsnyavt fqrgdgglms ngsrpgllna sdpsypwlad swpatslpvn
      961 nstsgpndlg nfgrgdvlpl vpgqgdktat mlsdgaiyss idfttktsyn sssqitqatp
     1021 yattqilhsn sihelavdlp dpqwkssiqq kndlmgfgys lpdqgkgnng gkggkkkknk
     1081 ntakpqknng snwasvplpp ppvqplpgte lehygvdqqe agydsdgwcp plpvqtylhq
     1141 gmedeleedd drvptppvrg vasspaisfg qqstatltps preemqpmlq ahldeltray
     1201 qfdiakqtwh iqsntqppqa pvpplgyvsg nlisdletdv pdddeddded dieeetieis
     1261 rplrglehtp gssmdnldss vtgkaypssq rprpsspfst dsntsaavnq sqrprptkkh
     1321 kggrldqppl phrregitdd lppppdpppg qglrqqivpg qrggsaerkg sslerqhapn
     1381 vdetkssldr qartslewqr qtqewisste rqedfrkaqh kqafgseeal vpyskpnfps
     1441 pgghsssgta sskgstgprk gevlrgghqr nasdlldlgy vgsnsqgqft gel
//
LOCUS       XP_053926030            1489 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 2 isoform X14 [Cuculus canorus].
ACCESSION   XP_053926030
VERSION     XP_053926030.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070055.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1489
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1489
                     /product="roundabout homolog 2 isoform X14"
                     /calculated_mol_wt=163143
     Region          50..148
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          50..54
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(54,57,66,68,70,72,112..113)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          57..62
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          66..74
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          80..85
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          88..90
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          101..104
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          107..113
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          125..133
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          136..148
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          155..240
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          169..173
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          183..187
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          205..209
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          219..224
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          233..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          247..329
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          261..265
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          274..278
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          295..299
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          309..314
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          322..325
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          334..431
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          334..338
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          340..344
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          350..358
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          361..368
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          370..373
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          386..391
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          393..400
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          406..415
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          417..428
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          438..524
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          438..441
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          445..448
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          454..461
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          <460..875
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          467..472
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          474..476
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          483..487
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          490..495
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          503..511
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          514..524
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          542..635
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(542,607,622)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(623..624,626..627)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1489
                     /gene="ROBO2"
                     /coded_by="XM_054070055.1:434..4903"
                     /db_xref="GeneID:104056033"
ORIGIN      
        1 mlssvkkgki tmllfilmll fsgptlskls rtkgkhwkgg srlrqedfpp rivehpsdvi
       61 vskgepttln ckaegrptpt iewykdgerv etdkddprsh rmllpsgslf flrivhgrrs
      121 kpdegsyvcv arnylgeavs rnaslevall rddfrqnptd vvvaagepai lecqpprghp
      181 eptiywkkdk vriddreeri sirggklmis ntrksdagmy tcvgtnmvge rdsdpaeltv
      241 ferptflrrp inqvvleeea vdfrcqvqgd ptptvrwkkd dadlprgryd ikddytlrik
      301 kalstdegty tciaenrvgk veasatltvr appqfvvrpr dqivaqgrtv tfpcetkgnp
      361 qpavfwqkeg sqnllfpnqp lqpnsrysvs ptgdltitni qrsdagyyic qaltvagsil
      421 akaqlevtdv ltdrpppiil qgpvnqtlav dgtallkcka tgdplpvisw lkegftflgr
      481 dprtsiqdqg tlqiknlrls dtgtytcvat sssgetswsa vlevtesgga tvsknydind
      541 lpgppskpqv tdvtknsvtl swqpgtpgsl pasayiieaf sqsvsnswqt vanhvkttly
      601 tvrglrpnti ylfmvrains qglsdpspms dpvrtqdisp paqgvdhrqv qkelgdvivr
      661 lhnpvvltpt tvqvtwtvdr qsqfiqgyrv myrqtsglps pavwqnlevk vptersavlv
      721 slkkgvtyei kvrpyfnefq gmdsesksar tteeapsapp qsvtvltvgn hnstsisisw
      781 dppppdhqng viqeykiwcl gnetrfhink tvdaairsvv igglypgiqy rvevaastsa
      841 gvgvksepqp iiiggrnevv itennnsite qitdvvkqpa fiagiggacw vilmgfsiwl
      901 ywrrkkrkgl snyavtfqrg dgglmsngsr pgllnasdps ypwladswpa tslpvnnsts
      961 gpndlgnfgr gdvlplvpgq gdktatmlsd gaiyssidft tktsynsssq itqatpyatt
     1021 qilhsnsihe lavdlpdpqw kssiqqkndl mgfgyslpdq gkgnnggkgg kkkknkntak
     1081 pqknngsnwa svplppppvq plpgtelehy gvdqqeagyd sdgwcpplpv qtylhqgmed
     1141 eleedddrvp tppvrgvass paisfgqqst atltpspree mqpmlqahld eltrayqfdi
     1201 akqtwhiqsn tqppqapvpp lgyvsgnlis dletdvpddd edddeddiee etieisrplr
     1261 glehtpgssm dnldssvtgk aypssqrprp sspfstdsnt saavnqsqrp rptkkhkggr
     1321 ldqpplphrr egitddlppp pdpppgqglr qqivpgqrgg saerkgssle rqhapnvdet
     1381 kssldrqart slewqrqtqe wissterqed frkaqhkqaf gseealvpys kpnfpspggh
     1441 sssgtasskg stgprkgevl rgghqrnasd lldlgyvgsn sqgqftgel
//
LOCUS       XP_053926035            1478 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 2 isoform X15 [Cuculus canorus].
ACCESSION   XP_053926035
VERSION     XP_053926035.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070060.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1478
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1478
                     /product="roundabout homolog 2 isoform X15"
                     /calculated_mol_wt=161343
     Region          50..148
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          50..54
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(54,57,66,68,70,72,112..113)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          57..62
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          66..74
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          80..85
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          88..90
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          101..104
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          107..113
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          125..133
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          136..148
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          155..240
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          169..173
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          183..187
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          205..209
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          219..224
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          233..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          247..329
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          261..265
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          274..278
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          295..299
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          309..314
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          322..325
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          338..435
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          338..342
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          344..348
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          354..362
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          365..372
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          374..377
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          390..395
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          397..404
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          410..419
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          421..432
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          442..528
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          442..445
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          449..452
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          458..465
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          <464..879
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          471..476
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          478..480
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          487..491
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          494..499
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          507..515
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          518..528
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          546..639
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(546,611,626)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(627..628,630..631)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1478
                     /gene="ROBO2"
                     /coded_by="XM_054070060.1:440..4876"
                     /db_xref="GeneID:104056033"
ORIGIN      
        1 mlssvkkgki tmllfilmll fsgptlskls rtkgkhwkgg srlrqedfpp rivehpsdvi
       61 vskgepttln ckaegrptpt iewykdgerv etdkddprsh rmllpsgslf flrivhgrrs
      121 kpdegsyvcv arnylgeavs rnaslevall rddfrqnptd vvvaagepai lecqpprghp
      181 eptiywkkdk vriddreeri sirggklmis ntrksdagmy tcvgtnmvge rdsdpaeltv
      241 ferptflrrp inqvvleeea vdfrcqvqgd ptptvrwkkd dadlprgryd ikddytlrik
      301 kalstdegty tciaenrvgk veasatltvr arpvappqfv vrprdqivaq grtvtfpcet
      361 kgnpqpavfw qkegsqnllf pnqplqpnsr ysvsptgdlt itniqrsdag yyicqaltva
      421 gsilakaqle vtdvltdrpp piilqgpvnq tlavdgtall kckatgdplp viswlkegft
      481 flgrdprtsi qdqgtlqikn lrlsdtgtyt cvatsssget swsavlevte sggatvskny
      541 dindlpgpps kpqvtdvtkn svtlswqpgt pgslpasayi ieafsqsvsn swqtvanhvk
      601 ttlytvrglr pntiylfmvr ainsqglsdp spmsdpvrtq disppaqgvd hrqvqkelgd
      661 vivrlhnpvv ltpttvqvtw tvdrqsqfiq gyrvmyrqts glpspavwqn levkvpters
      721 avlvslkkgv tyeikvrpyf nefqgmdses ksartteeap sappqsvtvl tvgnhnstsi
      781 siswdppppd hqngviqeyk iwclgnetrf hinktvdaai rsvvigglyp giqyrvevaa
      841 stsagvgvks epqpiiiggr nevvitennn siteqitdvv kqpafiagig gacwvilmgf
      901 siwlywrrkk rkglsnyavt fqrgdgglms ngsrpgllna sdpsypwlad swpatslpvn
      961 nstsgpndlg nfgrgadvlp lvpgqgdkta tmlsdgaiys sidfttktsy nsssqitqat
     1021 pyattqilhs nsihelavdl pdpqwkssiq qkndlmgfgy slpdqgkgnn allyipdyrv
     1081 aeglanrlph nqsqdfstts shnssersgs lsggkggkkk knkntakpqk nngsnwasvp
     1141 lppppvqplp gtelehygvd qqeagydsdg wcpplpvqty lhqgmedele edddrvptpp
     1201 vrgvasspai sfgqqstatl tpspreemqp mlqahldelt rayqfdiakq twhiqsntqp
     1261 pqapvpplgy vsgnlisdle tdvpdddedd deddieeeti eisrplrgle htpgssmdnl
     1321 dssvtgsmvn gwgsasdedr nfsshrssvg sssddsifts gsfaqalvaa adkagfrldg
     1381 tsltrtgkay pssqrprpss pfstdsntsa avnqsqrprp tkkhkggrld qpplphrreg
     1441 itdeealvpy skpnfpspgg hsssgtassk gstgprke
//
LOCUS       XP_053926043            1467 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 2 isoform X16 [Cuculus canorus].
ACCESSION   XP_053926043
VERSION     XP_053926043.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070068.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1467
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1467
                     /product="roundabout homolog 2 isoform X16"
                     /calculated_mol_wt=160012
     Region          50..148
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          50..54
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(54,57,66,68,70,72,112..113)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          57..62
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          66..74
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          80..85
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          88..90
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          101..104
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          107..113
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          125..133
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          136..148
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          155..240
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          169..173
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          183..187
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          205..209
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          219..224
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          233..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          247..329
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          261..265
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          274..278
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          295..299
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          309..314
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          322..325
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          338..435
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          338..342
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          344..348
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          354..362
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          365..372
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          374..377
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          390..395
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          397..404
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          410..419
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          421..432
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          442..528
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          442..445
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          449..452
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          458..465
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          <464..879
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          471..476
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          478..480
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          487..491
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          494..499
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          507..515
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          518..528
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          546..639
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(546,611,626)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(627..628,630..631)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1467
                     /gene="ROBO2"
                     /coded_by="XM_054070068.1:439..4842"
                     /db_xref="GeneID:104056033"
ORIGIN      
        1 mlssvkkgki tmllfilmll fsgptlskls rtkgkhwkgg srlrqedfpp rivehpsdvi
       61 vskgepttln ckaegrptpt iewykdgerv etdkddprsh rmllpsgslf flrivhgrrs
      121 kpdegsyvcv arnylgeavs rnaslevall rddfrqnptd vvvaagepai lecqpprghp
      181 eptiywkkdk vriddreeri sirggklmis ntrksdagmy tcvgtnmvge rdsdpaeltv
      241 ferptflrrp inqvvleeea vdfrcqvqgd ptptvrwkkd dadlprgryd ikddytlrik
      301 kalstdegty tciaenrvgk veasatltvr arpvappqfv vrprdqivaq grtvtfpcet
      361 kgnpqpavfw qkegsqnllf pnqplqpnsr ysvsptgdlt itniqrsdag yyicqaltva
      421 gsilakaqle vtdvltdrpp piilqgpvnq tlavdgtall kckatgdplp viswlkegft
      481 flgrdprtsi qdqgtlqikn lrlsdtgtyt cvatsssget swsavlevte sggatvskny
      541 dindlpgpps kpqvtdvtkn svtlswqpgt pgslpasayi ieafsqsvsn swqtvanhvk
      601 ttlytvrglr pntiylfmvr ainsqglsdp spmsdpvrtq disppaqgvd hrqvqkelgd
      661 vivrlhnpvv ltpttvqvtw tvdrqsqfiq gyrvmyrqts glpspavwqn levkvpters
      721 avlvslkkgv tyeikvrpyf nefqgmdses ksartteeap sappqsvtvl tvgnhnstsi
      781 siswdppppd hqngviqeyk iwclgnetrf hinktvdaai rsvvigglyp giqyrvevaa
      841 stsagvgvks epqpiiiggr nevvitennn siteqitdvv kqpafiagig gacwvilmgf
      901 siwlywrrkk rkglsnyavt fqrgdgglms ngsrpgllna sdpsypwlad swpatslpvn
      961 nstsgpndlg nfgrgdvlpl vpgqgdktat mlsdgaiyss idfttktsyn sssqitqatp
     1021 yattqilhsn sihelavdlp dpqwkssiqq kndlmgfgys lpdqgkgnng gkggkkkknk
     1081 ntakpqknng snwasvplpp ppvqplpgte lehygvdqqe agydsdgwcp plpvqtylhq
     1141 gmedeleedd drvptppvrg vasspaisfg qqstatltps preemqpmlq ahldeltray
     1201 qfdiakqtwh iqsntqppqa pvpplgyvsg nlisdletdv pdddeddded dieeetieis
     1261 rplrglehtp gssmdnldss vtgsmvngwg sasdedrnfs shrssvgsss ddsiftsgsf
     1321 aqalvaaadk agfrldgtsl trtgkaypss qrprpsspfs tdsntsaavn qsqrprptkk
     1381 hkggrldqpp lphrregitd eealvpyskp nfpspgghss sgtasskgst gprkgevlrg
     1441 ghqrnasdll dlgyvgsnsq gqftgel
//
LOCUS       XP_053926050            1449 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 2 isoform X17 [Cuculus canorus].
ACCESSION   XP_053926050
VERSION     XP_053926050.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070075.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1449
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1449
                     /product="roundabout homolog 2 isoform X17"
                     /calculated_mol_wt=158429
     Region          50..148
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          50..54
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(54,57,66,68,70,72,112..113)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          57..62
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          66..74
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          80..85
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          88..90
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          101..104
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          107..113
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          125..133
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          136..148
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          155..240
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          169..173
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          183..187
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          205..209
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          219..224
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          233..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          247..329
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          261..265
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          274..278
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          295..299
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          309..314
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          322..325
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          338..435
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          338..342
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          344..348
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          354..362
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          365..372
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          374..377
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          390..395
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          397..404
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          410..419
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          421..432
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          442..528
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          442..445
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          449..452
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          458..465
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          <464..879
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          471..476
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          478..480
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          487..491
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          494..499
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          507..515
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          518..528
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          546..639
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(546,611,626)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(627..628,630..631)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1449
                     /gene="ROBO2"
                     /coded_by="XM_054070075.1:436..4785"
                     /db_xref="GeneID:104056033"
ORIGIN      
        1 mlssvkkgki tmllfilmll fsgptlskls rtkgkhwkgg srlrqedfpp rivehpsdvi
       61 vskgepttln ckaegrptpt iewykdgerv etdkddprsh rmllpsgslf flrivhgrrs
      121 kpdegsyvcv arnylgeavs rnaslevall rddfrqnptd vvvaagepai lecqpprghp
      181 eptiywkkdk vriddreeri sirggklmis ntrksdagmy tcvgtnmvge rdsdpaeltv
      241 ferptflrrp inqvvleeea vdfrcqvqgd ptptvrwkkd dadlprgryd ikddytlrik
      301 kalstdegty tciaenrvgk veasatltvr arpvappqfv vrprdqivaq grtvtfpcet
      361 kgnpqpavfw qkegsqnllf pnqplqpnsr ysvsptgdlt itniqrsdag yyicqaltva
      421 gsilakaqle vtdvltdrpp piilqgpvnq tlavdgtall kckatgdplp viswlkegft
      481 flgrdprtsi qdqgtlqikn lrlsdtgtyt cvatsssget swsavlevte sggatvskny
      541 dindlpgpps kpqvtdvtkn svtlswqpgt pgslpasayi ieafsqsvsn swqtvanhvk
      601 ttlytvrglr pntiylfmvr ainsqglsdp spmsdpvrtq disppaqgvd hrqvqkelgd
      661 vivrlhnpvv ltpttvqvtw tvdrqsqfiq gyrvmyrqts glpspavwqn levkvpters
      721 avlvslkkgv tyeikvrpyf nefqgmdses ksartteeap sappqsvtvl tvgnhnstsi
      781 siswdppppd hqngviqeyk iwclgnetrf hinktvdaai rsvvigglyp giqyrvevaa
      841 stsagvgvks epqpiiiggr nevvitennn siteqitdvv kqpafiagig gacwvilmgf
      901 siwlywrrkk rkglsnyavt fqrgdgglms ngsrpgllna sdpsypwlad swpatslpvn
      961 nstsgpndlg nfgrgadvlp lvpgqgdkta tmlsdgaiys sidfttktsy nsssqitqat
     1021 pyattqilhs nsihelavdl pdpqwkssiq qkndlmgfgy slpdqgkgnn allyipdyrv
     1081 aeglanrlph nqsqdfstts shnssersgs lsggkggkkk knkntakpqk nngsnwasvp
     1141 lppppvqplp gtelehygvd qqeagydsdg wcpplpvqty lhqgmedele edddrvptpp
     1201 vrgvasspai sfgqqstatl tpspreemqp mlqahldelt rayqfdiakq twhiqsntqp
     1261 pqapvpplgy vsgnlisdle tdvpdddedd deddieeeti eisrplrgle htpgssmdnl
     1321 dssvtgkayp ssqrprpssp fstdsntsaa vnqsqrprpt kkhkggrldq pplphrregi
     1381 tdeealvpys kpnfpspggh sssgtasskg stgprkgevl rgghqrnasd lldlgyvgsn
     1441 sqgqftgel
//
LOCUS       XP_053926059            1448 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 2 isoform X18 [Cuculus canorus].
ACCESSION   XP_053926059
VERSION     XP_053926059.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070084.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1448
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1448
                     /product="roundabout homolog 2 isoform X18"
                     /calculated_mol_wt=158358
     Region          50..148
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          50..54
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(54,57,66,68,70,72,112..113)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          57..62
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          66..74
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          80..85
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          88..90
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          101..104
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          107..113
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          125..133
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          136..148
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          155..240
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          169..173
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          183..187
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          205..209
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          219..224
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          233..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          247..329
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          261..265
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          274..278
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          295..299
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          309..314
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          322..325
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          338..435
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          338..342
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          344..348
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          354..362
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          365..372
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          374..377
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          390..395
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          397..404
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          410..419
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          421..432
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          442..528
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          442..445
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          449..452
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          458..465
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          <464..879
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          471..476
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          478..480
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          487..491
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          494..499
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          507..515
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          518..528
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          546..639
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(546,611,626)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(627..628,630..631)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1448
                     /gene="ROBO2"
                     /coded_by="XM_054070084.1:434..4780"
                     /db_xref="GeneID:104056033"
ORIGIN      
        1 mlssvkkgki tmllfilmll fsgptlskls rtkgkhwkgg srlrqedfpp rivehpsdvi
       61 vskgepttln ckaegrptpt iewykdgerv etdkddprsh rmllpsgslf flrivhgrrs
      121 kpdegsyvcv arnylgeavs rnaslevall rddfrqnptd vvvaagepai lecqpprghp
      181 eptiywkkdk vriddreeri sirggklmis ntrksdagmy tcvgtnmvge rdsdpaeltv
      241 ferptflrrp inqvvleeea vdfrcqvqgd ptptvrwkkd dadlprgryd ikddytlrik
      301 kalstdegty tciaenrvgk veasatltvr arpvappqfv vrprdqivaq grtvtfpcet
      361 kgnpqpavfw qkegsqnllf pnqplqpnsr ysvsptgdlt itniqrsdag yyicqaltva
      421 gsilakaqle vtdvltdrpp piilqgpvnq tlavdgtall kckatgdplp viswlkegft
      481 flgrdprtsi qdqgtlqikn lrlsdtgtyt cvatsssget swsavlevte sggatvskny
      541 dindlpgpps kpqvtdvtkn svtlswqpgt pgslpasayi ieafsqsvsn swqtvanhvk
      601 ttlytvrglr pntiylfmvr ainsqglsdp spmsdpvrtq disppaqgvd hrqvqkelgd
      661 vivrlhnpvv ltpttvqvtw tvdrqsqfiq gyrvmyrqts glpspavwqn levkvpters
      721 avlvslkkgv tyeikvrpyf nefqgmdses ksartteeap sappqsvtvl tvgnhnstsi
      781 siswdppppd hqngviqeyk iwclgnetrf hinktvdaai rsvvigglyp giqyrvevaa
      841 stsagvgvks epqpiiiggr nevvitennn siteqitdvv kqpafiagig gacwvilmgf
      901 siwlywrrkk rkglsnyavt fqrgdgglms ngsrpgllna sdpsypwlad swpatslpvn
      961 nstsgpndlg nfgrgdvlpl vpgqgdktat mlsdgaiyss idfttktsyn sssqitqatp
     1021 yattqilhsn sihelavdlp dpqwkssiqq kndlmgfgys lpdqgkgnna llyipdyrva
     1081 eglanrlphn qsqdfsttss hnssersgsl sggkggkkkk nkntakpqkn ngsnwasvpl
     1141 ppppvqplpg telehygvdq qeagydsdgw cpplpvqtyl hqgmedelee dddrvptppv
     1201 rgvasspais fgqqstatlt pspreemqpm lqahldeltr ayqfdiakqt whiqsntqpp
     1261 qapvpplgyv sgnlisdlet dvpdddeddd eddieeetie isrplrgleh tpgssmdnld
     1321 ssvtgkayps sqrprpsspf stdsntsaav nqsqrprptk khkggrldqp plphrregit
     1381 deealvpysk pnfpspgghs ssgtasskgs tgprkgevlr gghqrnasdl ldlgyvgsns
     1441 qgqftgel
//
LOCUS       XP_053926068            1444 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 2 isoform X19 [Cuculus canorus].
ACCESSION   XP_053926068
VERSION     XP_053926068.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070093.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1444
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1444
                     /product="roundabout homolog 2 isoform X19"
                     /calculated_mol_wt=157935
     Region          50..148
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          50..54
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(54,57,66,68,70,72,112..113)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          57..62
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          66..74
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          80..85
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          88..90
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          101..104
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          107..113
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          125..133
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          136..148
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          155..240
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          169..173
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          183..187
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          205..209
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          219..224
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          233..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          247..329
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          261..265
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          274..278
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          295..299
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          309..314
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          322..325
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          334..431
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          334..338
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          340..344
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          350..358
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          361..368
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          370..373
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          386..391
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          393..400
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          406..415
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          417..428
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          438..524
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          438..441
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          445..448
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          454..461
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          <460..875
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          467..472
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          474..476
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          483..487
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          490..495
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          503..511
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          514..524
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          542..635
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(542,607,622)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(623..624,626..627)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1444
                     /gene="ROBO2"
                     /coded_by="XM_054070093.1:436..4770"
                     /db_xref="GeneID:104056033"
ORIGIN      
        1 mlssvkkgki tmllfilmll fsgptlskls rtkgkhwkgg srlrqedfpp rivehpsdvi
       61 vskgepttln ckaegrptpt iewykdgerv etdkddprsh rmllpsgslf flrivhgrrs
      121 kpdegsyvcv arnylgeavs rnaslevall rddfrqnptd vvvaagepai lecqpprghp
      181 eptiywkkdk vriddreeri sirggklmis ntrksdagmy tcvgtnmvge rdsdpaeltv
      241 ferptflrrp inqvvleeea vdfrcqvqgd ptptvrwkkd dadlprgryd ikddytlrik
      301 kalstdegty tciaenrvgk veasatltvr appqfvvrpr dqivaqgrtv tfpcetkgnp
      361 qpavfwqkeg sqnllfpnqp lqpnsrysvs ptgdltitni qrsdagyyic qaltvagsil
      421 akaqlevtdv ltdrpppiil qgpvnqtlav dgtallkcka tgdplpvisw lkegftflgr
      481 dprtsiqdqg tlqiknlrls dtgtytcvat sssgetswsa vlevtesgga tvsknydind
      541 lpgppskpqv tdvtknsvtl swqpgtpgsl pasayiieaf sqsvsnswqt vanhvkttly
      601 tvrglrpnti ylfmvrains qglsdpspms dpvrtqdisp paqgvdhrqv qkelgdvivr
      661 lhnpvvltpt tvqvtwtvdr qsqfiqgyrv myrqtsglps pavwqnlevk vptersavlv
      721 slkkgvtyei kvrpyfnefq gmdsesksar tteeapsapp qsvtvltvgn hnstsisisw
      781 dppppdhqng viqeykiwcl gnetrfhink tvdaairsvv igglypgiqy rvevaastsa
      841 gvgvksepqp iiiggrnevv itennnsite qitdvvkqpa fiagiggacw vilmgfsiwl
      901 ywrrkkrkgl snyavtfqrg dgglmsngsr pgllnasdps ypwladswpa tslpvnnsts
      961 gpndlgnfgr gdvlplvpgq gdktatmlsd gaiyssidft tktsynsssq itqatpyatt
     1021 qilhsnsihe lavdlpdpqw kssiqqkndl mgfgyslpdq gkgnnallyi pdyrvaegla
     1081 nrlphnqsqd fsttsshnss ersgslsggk ggkkkknknt akpqknngsn wasvplpppp
     1141 vqplpgtele hygvdqqeag ydsdgwcppl pvqtylhqgm edeleedddr vptppvrgva
     1201 sspaisfgqq statltpspr eemqpmlqah ldeltrayqf diakqtwhiq sntqppqapv
     1261 pplgyvsgnl isdletdvpd ddedddeddi eeetieisrp lrglehtpgs smdnldssvt
     1321 gkaypssqrp rpsspfstds ntsaavnqsq rprptkkhkg grldqpplph rregitdeea
     1381 lvpyskpnfp spgghsssgt asskgstgpr kgevlrgghq rnasdlldlg yvgsnsqgqf
     1441 tgel
//
LOCUS       XP_053926078            1406 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 2 isoform X20 [Cuculus canorus].
ACCESSION   XP_053926078
VERSION     XP_053926078.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070103.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1406
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1406
                     /product="roundabout homolog 2 isoform X20"
                     /calculated_mol_wt=153769
     Region          50..148
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          50..54
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(54,57,66,68,70,72,112..113)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          57..62
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          66..74
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          80..85
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          88..90
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          101..104
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          107..113
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          125..133
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          136..148
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          155..240
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          169..173
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          183..187
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          205..209
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          219..224
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          233..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          247..329
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          261..265
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          274..278
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          295..299
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          309..314
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          322..325
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          338..435
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          338..342
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          344..348
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          354..362
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          365..372
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          374..377
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          390..395
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          397..404
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          410..419
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          421..432
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          442..528
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          442..445
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          449..452
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          458..465
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          <464..879
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          471..476
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          478..480
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          487..491
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          494..499
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          507..515
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          518..528
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          546..639
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(546,611,626)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(627..628,630..631)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1406
                     /gene="ROBO2"
                     /coded_by="XM_054070103.1:434..4654"
                     /db_xref="GeneID:104056033"
ORIGIN      
        1 mlssvkkgki tmllfilmll fsgptlskls rtkgkhwkgg srlrqedfpp rivehpsdvi
       61 vskgepttln ckaegrptpt iewykdgerv etdkddprsh rmllpsgslf flrivhgrrs
      121 kpdegsyvcv arnylgeavs rnaslevall rddfrqnptd vvvaagepai lecqpprghp
      181 eptiywkkdk vriddreeri sirggklmis ntrksdagmy tcvgtnmvge rdsdpaeltv
      241 ferptflrrp inqvvleeea vdfrcqvqgd ptptvrwkkd dadlprgryd ikddytlrik
      301 kalstdegty tciaenrvgk veasatltvr arpvappqfv vrprdqivaq grtvtfpcet
      361 kgnpqpavfw qkegsqnllf pnqplqpnsr ysvsptgdlt itniqrsdag yyicqaltva
      421 gsilakaqle vtdvltdrpp piilqgpvnq tlavdgtall kckatgdplp viswlkegft
      481 flgrdprtsi qdqgtlqikn lrlsdtgtyt cvatsssget swsavlevte sggatvskny
      541 dindlpgpps kpqvtdvtkn svtlswqpgt pgslpasayi ieafsqsvsn swqtvanhvk
      601 ttlytvrglr pntiylfmvr ainsqglsdp spmsdpvrtq disppaqgvd hrqvqkelgd
      661 vivrlhnpvv ltpttvqvtw tvdrqsqfiq gyrvmyrqts glpspavwqn levkvpters
      721 avlvslkkgv tyeikvrpyf nefqgmdses ksartteeap sappqsvtvl tvgnhnstsi
      781 siswdppppd hqngviqeyk iwclgnetrf hinktvdaai rsvvigglyp giqyrvevaa
      841 stsagvgvks epqpiiiggr nevvitennn siteqitdvv kqpafiagig gacwvilmgf
      901 siwlywrrkk rkglsnyavt fqrgdgglms ngsrpgllna sdpsypwlad swpatslpvn
      961 nstsgpndlg nfgrgdvlpl vpgqgdktat mlsdgaiyss idfttktsyn sssqitqatp
     1021 yattqilhsn sihelavdlp dpqwkssiqq kndlmgfgys lpdqgkgnng gkggkkkknk
     1081 ntakpqknng snwasvplpp ppvqplpgte lehygvdqqe agydsdgwcp plpvqtylhq
     1141 gmedeleedd drvptppvrg vasspaisfg qqstatltps preemqpmlq ahldeltray
     1201 qfdiakqtwh iqsntqppqa pvpplgyvsg nlisdletdv pdddeddded dieeetieis
     1261 rplrglehtp gssmdnldss vtgkaypssq rprpsspfst dsntsaavnq sqrprptkkh
     1321 kggrldqppl phrregitde ealvpyskpn fpspgghsss gtasskgstg prkgevlrgg
     1381 hqrnasdlld lgyvgsnsqg qftgel
//
LOCUS       XP_053926088            1402 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 2 isoform X21 [Cuculus canorus].
ACCESSION   XP_053926088
VERSION     XP_053926088.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070113.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1402
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1402
                     /product="roundabout homolog 2 isoform X21"
                     /calculated_mol_wt=153346
     Region          50..148
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          50..54
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(54,57,66,68,70,72,112..113)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          57..62
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          66..74
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          80..85
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          88..90
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          101..104
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          107..113
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          125..133
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          136..148
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          155..240
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          169..173
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          183..187
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          205..209
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          219..224
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          233..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          247..329
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          261..265
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          274..278
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          295..299
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          309..314
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          322..325
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          334..431
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          334..338
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          340..344
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          350..358
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          361..368
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          370..373
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          386..391
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          393..400
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          406..415
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          417..428
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          438..524
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          438..441
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          445..448
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          454..461
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          <460..875
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          467..472
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          474..476
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          483..487
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          490..495
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          503..511
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          514..524
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          542..635
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(542,607,622)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(623..624,626..627)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1402
                     /gene="ROBO2"
                     /coded_by="XM_054070113.1:435..4643"
                     /db_xref="GeneID:104056033"
ORIGIN      
        1 mlssvkkgki tmllfilmll fsgptlskls rtkgkhwkgg srlrqedfpp rivehpsdvi
       61 vskgepttln ckaegrptpt iewykdgerv etdkddprsh rmllpsgslf flrivhgrrs
      121 kpdegsyvcv arnylgeavs rnaslevall rddfrqnptd vvvaagepai lecqpprghp
      181 eptiywkkdk vriddreeri sirggklmis ntrksdagmy tcvgtnmvge rdsdpaeltv
      241 ferptflrrp inqvvleeea vdfrcqvqgd ptptvrwkkd dadlprgryd ikddytlrik
      301 kalstdegty tciaenrvgk veasatltvr appqfvvrpr dqivaqgrtv tfpcetkgnp
      361 qpavfwqkeg sqnllfpnqp lqpnsrysvs ptgdltitni qrsdagyyic qaltvagsil
      421 akaqlevtdv ltdrpppiil qgpvnqtlav dgtallkcka tgdplpvisw lkegftflgr
      481 dprtsiqdqg tlqiknlrls dtgtytcvat sssgetswsa vlevtesgga tvsknydind
      541 lpgppskpqv tdvtknsvtl swqpgtpgsl pasayiieaf sqsvsnswqt vanhvkttly
      601 tvrglrpnti ylfmvrains qglsdpspms dpvrtqdisp paqgvdhrqv qkelgdvivr
      661 lhnpvvltpt tvqvtwtvdr qsqfiqgyrv myrqtsglps pavwqnlevk vptersavlv
      721 slkkgvtyei kvrpyfnefq gmdsesksar tteeapsapp qsvtvltvgn hnstsisisw
      781 dppppdhqng viqeykiwcl gnetrfhink tvdaairsvv igglypgiqy rvevaastsa
      841 gvgvksepqp iiiggrnevv itennnsite qitdvvkqpa fiagiggacw vilmgfsiwl
      901 ywrrkkrkgl snyavtfqrg dgglmsngsr pgllnasdps ypwladswpa tslpvnnsts
      961 gpndlgnfgr gdvlplvpgq gdktatmlsd gaiyssidft tktsynsssq itqatpyatt
     1021 qilhsnsihe lavdlpdpqw kssiqqkndl mgfgyslpdq gkgnnggkgg kkkknkntak
     1081 pqknngsnwa svplppppvq plpgtelehy gvdqqeagyd sdgwcpplpv qtylhqgmed
     1141 eleedddrvp tppvrgvass paisfgqqst atltpspree mqpmlqahld eltrayqfdi
     1201 akqtwhiqsn tqppqapvpp lgyvsgnlis dletdvpddd edddeddiee etieisrplr
     1261 glehtpgssm dnldssvtgk aypssqrprp sspfstdsnt saavnqsqrp rptkkhkggr
     1321 ldqpplphrr egitdeealv pyskpnfpsp gghsssgtas skgstgprkg evlrgghqrn
     1381 asdlldlgyv gsnsqgqftg el
//
LOCUS       XP_053926096             464 aa            linear   VRT 09-MAR-2023
DEFINITION  cyclin-dependent kinase 8 isoform X1 [Cuculus canorus].
ACCESSION   XP_053926096
VERSION     XP_053926096.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070121.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..464
                     /product="cyclin-dependent kinase 8 isoform X1"
                     /calculated_mol_wt=53194
     Region          3..335
                     /region_name="STKc_CDK8"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Cyclin-Dependent protein Kinase 8; cd07868"
                     /db_xref="CDD:270851"
     Site            order(3..6,9,13,58..59,61,64..65,67..69,71..73,84,86..88,
                     91..93,145..147)
                     /site_type="other"
                     /note="CDK/cyclin interface [polypeptide binding]"
                     /db_xref="CDD:270851"
     Site            order(27..30,35,50,52,65,79,97..100,103,105..106,151,153,
                     155..156,158,173,176,191,193..196,198,236..237)
                     /site_type="active"
                     /db_xref="CDD:270851"
     Site            order(27..30,35,50,52,79,97..100,103,106,155..156,158,173)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270851"
     Site            order(65,105,151,153,176,191,193..196,198,236..237)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270851"
     Site            172..198
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270851"
     CDS             1..464
                     /gene="CDK8"
                     /coded_by="XM_054070121.1:322..1716"
                     /db_xref="GeneID:104064226"
ORIGIN      
        1 mdydfkvklt gerervedlf eyegckvgrg tyghvykakr kdgkddkdya lkqiegtgis
       61 msacreiall relkhpnvis lqkvflshad rkvwllfdya ehdlwhiikf hraskankkp
      121 vqlprgmvks llyqildgih ylhanwvlhr dlkpanilvm gegpergrvk iadmgfarlf
      181 nsplkpladl dpvvvtfwyr apelllgarh ytkaidiwai gcifaellts epifhcrqed
      241 iktsnpyhhd qldrifnvmg fpadkdwedi kkmpehstlm kdfrrntytn cslikymekh
      301 kvkpdskafh llqklltmdp ikritseqam qdpyfledpl ptsdvfagcq ipypkreflt
      361 eeepddkgdk knqqqqqgnn htngtghpgn qdnshtqgpp lkkvrvvppt ttsgglimts
      421 dyqrsnphaa ypnpgpstsq pqssmgystt sqqppqyshq thry
//
LOCUS       XP_053926102             463 aa            linear   VRT 09-MAR-2023
DEFINITION  cyclin-dependent kinase 8 isoform X2 [Cuculus canorus].
ACCESSION   XP_053926102
VERSION     XP_053926102.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070127.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..463
                     /product="cyclin-dependent kinase 8 isoform X2"
                     /calculated_mol_wt=53066
     Region          3..335
                     /region_name="STKc_CDK8"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Cyclin-Dependent protein Kinase 8; cd07868"
                     /db_xref="CDD:270851"
     Site            order(3..6,9,13,58..59,61,64..65,67..69,71..73,84,86..88,
                     91..93,145..147)
                     /site_type="other"
                     /note="CDK/cyclin interface [polypeptide binding]"
                     /db_xref="CDD:270851"
     Site            order(27..30,35,50,52,65,79,97..100,103,105..106,151,153,
                     155..156,158,173,176,191,193..196,198,236..237)
                     /site_type="active"
                     /db_xref="CDD:270851"
     Site            order(27..30,35,50,52,79,97..100,103,106,155..156,158,173)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270851"
     Site            order(65,105,151,153,176,191,193..196,198,236..237)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270851"
     Site            172..198
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270851"
     CDS             1..463
                     /gene="CDK8"
                     /coded_by="XM_054070127.1:323..1714"
                     /db_xref="GeneID:104064226"
ORIGIN      
        1 mdydfkvklt gerervedlf eyegckvgrg tyghvykakr kdgkddkdya lkqiegtgis
       61 msacreiall relkhpnvis lqkvflshad rkvwllfdya ehdlwhiikf hraskankkp
      121 vqlprgmvks llyqildgih ylhanwvlhr dlkpanilvm gegpergrvk iadmgfarlf
      181 nsplkpladl dpvvvtfwyr apelllgarh ytkaidiwai gcifaellts epifhcrqed
      241 iktsnpyhhd qldrifnvmg fpadkdwedi kkmpehstlm kdfrrntytn cslikymekh
      301 kvkpdskafh llqklltmdp ikritseqam qdpyfledpl ptsdvfagcq ipypkreflt
      361 eeepddkgdk nqqqqqgnnh tngtghpgnq dnshtqgppl kkvrvvpptt tsgglimtsd
      421 yqrsnphaay pnpgpstsqp qssmgystts qqppqyshqt hry
//
LOCUS       XP_053926109             338 aa            linear   VRT 09-MAR-2023
DEFINITION  cyclin-dependent kinase 8 isoform X3 [Cuculus canorus].
ACCESSION   XP_053926109
VERSION     XP_053926109.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070134.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..338
                     /product="cyclin-dependent kinase 8 isoform X3"
                     /calculated_mol_wt=38491
     Region          <1..209
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     CDS             1..338
                     /gene="CDK8"
                     /coded_by="XM_054070134.1:297..1313"
                     /db_xref="GeneID:104064226"
ORIGIN      
        1 mvksllyqil dgihylhanw vlhrdlkpan ilvmgegper grvkiadmgf arlfnsplkp
       61 ladldpvvvt fwyrapelll garhytkaid iwaigcifae lltsepifhc rqediktsnp
      121 yhhdqldrif nvmgfpadkd wedikkmpeh stlmkdfrrn tytncsliky mekhkvkpds
      181 kafhllqkll tmdpikrits eqamqdpyfl edplptsdvf agcqipypkr eflteeepdd
      241 kgdkknqqqq qgnnhtngtg hpgnqdnsht qgpplkkvrv vpptttsggl imtsdyqrsn
      301 phaaypnpgp stsqpqssmg ysttsqqppq yshqthry
//
LOCUS       XP_053926114             291 aa            linear   VRT 09-MAR-2023
DEFINITION  cyclin-dependent kinase 8 isoform X4 [Cuculus canorus].
ACCESSION   XP_053926114
VERSION     XP_053926114.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070139.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..291
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..291
                     /product="cyclin-dependent kinase 8 isoform X4"
                     /calculated_mol_wt=33127
     Region          <1..162
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     CDS             1..291
                     /gene="CDK8"
                     /coded_by="XM_054070139.1:146..1021"
                     /db_xref="GeneID:104064226"
ORIGIN      
        1 mgfarlfnsp lkpladldpv vvtfwyrape lllgarhytk aidiwaigci faelltsepi
       61 fhcrqedikt snpyhhdqld rifnvmgfpa dkdwedikkm pehstlmkdf rrntytncsl
      121 ikymekhkvk pdskafhllq klltmdpikr itseqamqdp yfledplpts dvfagcqipy
      181 pkreflteee pddkgdkknq qqqqgnnhtn gtghpgnqdn shtqgpplkk vrvvppttts
      241 gglimtsdyq rsnphaaypn pgpstsqpqs smgysttsqq ppqyshqthr y
//
LOCUS       XP_053926117             380 aa            linear   VRT 09-MAR-2023
DEFINITION  NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9,
            mitochondrial [Cuculus canorus].
ACCESSION   XP_053926117
VERSION     XP_053926117.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070142.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..380
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..380
                     /product="NADH dehydrogenase [ubiquinone] 1 alpha
                     subcomplex subunit 9, mitochondrial"
                     /calculated_mol_wt=42972
     Region          57..329
                     /region_name="NDUFA9_like_SDR_a"
                     /note="NADH dehydrogenase (ubiquinone) 1 alpha subcomplex,
                     subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs;
                     cd05271"
                     /db_xref="CDD:187579"
     Site            order(63,65..68,87..89,132..134,147,170..172,183,187,
                     206..209)
                     /site_type="other"
                     /note="putative NAD(P) binding site [chemical binding]"
                     /db_xref="CDD:187579"
     Site            order(183,187)
                     /site_type="active"
                     /db_xref="CDD:187579"
     CDS             1..380
                     /gene="NDUFA9"
                     /coded_by="XM_054070142.1:71..1213"
                     /db_xref="GeneID:104066620"
ORIGIN      
        1 mavavrcarv rrgllsprag pgisvlaaap svlpqhcqih havipcgrsg rssvsgivat
       61 vfgatgflgr yvvnrlgrig sqviipyrcd qydlmylrpm gdlgqllfle wdckdkdsir
      121 ravehsnvvi nlvgkewetk nfsfedafvn iprsiaritr eagvetfihi shlnasmksp
      181 skylrnkavg ekavreefpg aiilkpsemf gredrflnhy anmrwfggvp lialgkktvk
      241 qpvyvvdvak aiinaikdpd akgktyalag pkryllydmv eyvyavcfrt fipyplprpl
      301 yhlvarffei spfepwitrd kldrfhitdm tfpdlpgled lgiqptaleq kaievlrrhr
      361 ryrwldaele eakpaktypm
//
LOCUS       XP_053926124             380 aa            linear   VRT 09-MAR-2023
DEFINITION  NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9,
            mitochondrial [Cuculus canorus].
ACCESSION   XP_053926124
VERSION     XP_053926124.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070149.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..380
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..380
                     /product="NADH dehydrogenase [ubiquinone] 1 alpha
                     subcomplex subunit 9, mitochondrial"
                     /calculated_mol_wt=42972
     Region          57..329
                     /region_name="NDUFA9_like_SDR_a"
                     /note="NADH dehydrogenase (ubiquinone) 1 alpha subcomplex,
                     subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs;
                     cd05271"
                     /db_xref="CDD:187579"
     Site            order(63,65..68,87..89,132..134,147,170..172,183,187,
                     206..209)
                     /site_type="other"
                     /note="putative NAD(P) binding site [chemical binding]"
                     /db_xref="CDD:187579"
     Site            order(183,187)
                     /site_type="active"
                     /db_xref="CDD:187579"
     CDS             1..380
                     /gene="NDUFA9"
                     /coded_by="XM_054070149.1:71..1213"
                     /db_xref="GeneID:104066620"
ORIGIN      
        1 mavavrcarv rrgllsprag pgisvlaaap svlpqhcqih havipcgrsg rssvsgivat
       61 vfgatgflgr yvvnrlgrig sqviipyrcd qydlmylrpm gdlgqllfle wdckdkdsir
      121 ravehsnvvi nlvgkewetk nfsfedafvn iprsiaritr eagvetfihi shlnasmksp
      181 skylrnkavg ekavreefpg aiilkpsemf gredrflnhy anmrwfggvp lialgkktvk
      241 qpvyvvdvak aiinaikdpd akgktyalag pkryllydmv eyvyavcfrt fipyplprpl
      301 yhlvarffei spfepwitrd kldrfhitdm tfpdlpgled lgiqptaleq kaievlrrhr
      361 ryrwldaele eakpaktypm
//
LOCUS       XP_009559375             914 aa            linear   VRT 09-MAR-2023
DEFINITION  patched domain-containing protein 1 [Cuculus canorus].
ACCESSION   XP_009559375
VERSION     XP_009559375.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009561080.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009559375.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..914
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..914
                     /product="patched domain-containing protein 1"
                     /calculated_mol_wt=103907
     Region          123..877
                     /region_name="Patched"
                     /note="Patched family; pfam02460"
                     /db_xref="CDD:308203"
     CDS             1..914
                     /gene="PTCHD1"
                     /coded_by="XM_009561080.2:391..3135"
                     /db_xref="GeneID:104059410"
ORIGIN      
        1 mvlrgpwgsc ggpgaalall ralrtrmlrq vlhrglgtsf srlghfvash pvffasapvl
       61 isillgasfs ryqveesveh llapthslak iernlvdslf pvnrskhrly sdlqtpgryg
      121 rviitsfrka nmldqhhtdl ilklhsavtr iqvqrpgfny tfahicilnn dktcivddiv
      181 hvleelkaar ssnrtnfait ypithlkdgr evynghqlgg vtvhskdrvk saeaiqltyy
      241 lqainslndm vaekwesifc dtvelfqksn rkvkmypfts sslkedfqkt srvserylit
      301 slvlvvtlai lccsmqdcvr skpwlgllgl ltvtlatlta agiinltggk ynstflgipf
      361 vmlghglygt femlsswrkt redqhvkert aavfadsmls fslttamylv tfgigaspft
      421 nieaarifcc nsciaiffny lyvlsfygss lvftgyienn yqhsifcrkv pkpevlqekp
      481 awyrflltak fsedtadsee tntyeshllv wflkryycdw itntyvkpfv vlfylvyisf
      541 almgylqvse gsdlsnivat atrtieytta qqkyfsnysp vigfyiyesi eywntsvqed
      601 vleytkgfvr iswfesylny lrklnistgl pkknftdmlr nsflkapqfa hfsediifsk
      661 kynnevdvva srmflvaktm etkreelydl letlrklslt skvkfivfnp sfvymdryas
      721 svgaplqnsc isalfllffs aflvadslin vwltltvasv efgvigfmtl wkveldcisv
      781 lcliyginyt idncapllst fvlgkeftrt kwvknalevh gvailqsylc yivgliplaa
      841 vpsnltrtlf rclflialvt ffhcfailpv iltflppskk krkekknpen reeiecvemv
      901 dmdstrvvdq ittv
//
LOCUS       XP_053926145             919 aa            linear   VRT 09-MAR-2023
DEFINITION  lysine-specific demethylase 7A isoform X1 [Cuculus canorus].
ACCESSION   XP_053926145
VERSION     XP_053926145.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070170.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..919
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..919
                     /product="lysine-specific demethylase 7A isoform X1"
                     /calculated_mol_wt=104564
     Region          14..63
                     /region_name="PHD_KDM7"
                     /note="PHD finger found in lysine-specific demethylase 7
                     (KDM7); cd15640"
                     /db_xref="CDD:277110"
     Site            order(14,21,26..29,36,52..53)
                     /site_type="other"
                     /note="histone H3 binding site [polypeptide binding]"
                     /db_xref="CDD:277110"
     Region          209..272
                     /region_name="JmjC"
                     /note="A domain family that is part of the cupin
                     metalloenzyme superfamily; smart00558"
                     /db_xref="CDD:214721"
     Region          244..344
                     /region_name="cupin_RmlC-like"
                     /note="RmlC-like cupin superfamily; cl40423"
                     /db_xref="CDD:477354"
     Region          348..451
                     /region_name="JHD"
                     /note="Jumonji helical domain; pfam17811"
                     /db_xref="CDD:465515"
     CDS             1..919
                     /gene="KDM7A"
                     /coded_by="XM_054070170.1:54..2813"
                     /db_xref="GeneID:104058967"
ORIGIN      
        1 magaaaaata tpvycvcrep ydvnrfmiec dickdwfhgs cvgveehhav didlyhcpnc
       61 ailhgsslmk krrnwhrhdy telddgskpv qagtrtfvkq lrarsfpsad evilkmhgsq
      121 ltqrylekhg fdvpimvpkl dglglrlppp tfsvldvery vggdkvidvi dvarqadskm
      181 klhnyikyft npdrpkvlnv islefsdtkm selvevpdia rklswvenyw pddsvfpkpf
      241 vqkyclmgvq dsytdfhidf ggtsvwyhvl wgekifylik ptdenlalye swsssvtqse
      301 vyfgdkvdkc ykcvvkqght lfvptgwiha vltsqdcmaf ggnflhnlni gmqlrcyeme
      361 krlktpdlfk fpffeaicwf vaknlletlk elredgfqpp sylvqgvkal ltalklwmkk
      421 elvtehafei pdnirpghli kelskvirsv eeensklvkt qgilgvcpts rsshettsph
      481 hsrrrvrklr dhatktpsnl dilelhtrev lkrlemspwe edtagsklsg rfnkpfqpss
      541 tvpdwrtkdn dlrlllsngr iirderrpft drslytadse deddrtrskk tpvkvedqps
      601 gfegegnada qkplnmffes vkselrngss eysdtsdsee sepdcttqqk dssaedsess
      661 gdeekqevts nfkeeskvrr dlfqntqkps rnktpskkec ptststeeea iqgmlsmagl
      721 hynsclpght qstdcmdkrt slqehkrypr srhkdrqpsq shktiecgrs vkeeerdlgt
      781 sawarhlnea sriapqdtsk tqkyikkega aeashkvqen rsivhnnsls fqhgkytrds
      841 sliqgecrls dgslsperpy getslsvplh ptkrpasnpp pisnqatkgk rpkkgmatak
      901 qrlgkilkln rngharffv
//
LOCUS       XP_053926154             918 aa            linear   VRT 09-MAR-2023
DEFINITION  lysine-specific demethylase 7A isoform X2 [Cuculus canorus].
ACCESSION   XP_053926154
VERSION     XP_053926154.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070179.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..918
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..918
                     /product="lysine-specific demethylase 7A isoform X2"
                     /calculated_mol_wt=104435
     Region          14..63
                     /region_name="PHD_KDM7"
                     /note="PHD finger found in lysine-specific demethylase 7
                     (KDM7); cd15640"
                     /db_xref="CDD:277110"
     Site            order(14,21,26..29,36,52..53)
                     /site_type="other"
                     /note="histone H3 binding site [polypeptide binding]"
                     /db_xref="CDD:277110"
     Region          209..272
                     /region_name="JmjC"
                     /note="A domain family that is part of the cupin
                     metalloenzyme superfamily; smart00558"
                     /db_xref="CDD:214721"
     Region          244..344
                     /region_name="cupin_RmlC-like"
                     /note="RmlC-like cupin superfamily; cl40423"
                     /db_xref="CDD:477354"
     Region          348..451
                     /region_name="JHD"
                     /note="Jumonji helical domain; pfam17811"
                     /db_xref="CDD:465515"
     CDS             1..918
                     /gene="KDM7A"
                     /coded_by="XM_054070179.1:54..2810"
                     /db_xref="GeneID:104058967"
ORIGIN      
        1 magaaaaata tpvycvcrep ydvnrfmiec dickdwfhgs cvgveehhav didlyhcpnc
       61 ailhgsslmk krrnwhrhdy telddgskpv qagtrtfvkq lrarsfpsad evilkmhgsq
      121 ltqrylekhg fdvpimvpkl dglglrlppp tfsvldvery vggdkvidvi dvarqadskm
      181 klhnyikyft npdrpkvlnv islefsdtkm selvevpdia rklswvenyw pddsvfpkpf
      241 vqkyclmgvq dsytdfhidf ggtsvwyhvl wgekifylik ptdenlalye swsssvtqse
      301 vyfgdkvdkc ykcvvkqght lfvptgwiha vltsqdcmaf ggnflhnlni gmqlrcyeme
      361 krlktpdlfk fpffeaicwf vaknlletlk elredgfqpp sylvqgvkal ltalklwmkk
      421 elvtehafei pdnirpghli kelskvirsv eeensklvkt qgilgvcpts rsshettsph
      481 hsrrrvrklr dhatktpsnl dilelhtrev lkrlemspwe edtagsklsg rfnkpfqpss
      541 tvpdwrtkdn dlrlllsngr iirderrpft drslytadse deddrtrskk tpvkvedqps
      601 gfegegnada qkplnmffes vkselrngss eysdtsdsee sepdcttqkd ssaedsessg
      661 deekqevtsn fkeeskvrrd lfqntqkpsr nktpskkecp tststeeeai qgmlsmaglh
      721 ynsclpghtq stdcmdkrts lqehkryprs rhkdrqpsqs hktiecgrsv keeerdlgts
      781 awarhlneas riapqdtskt qkyikkegaa eashkvqenr sivhnnslsf qhgkytrdss
      841 liqgecrlsd gslsperpyg etslsvplhp tkrpasnppp isnqatkgkr pkkgmatakq
      901 rlgkilklnr ngharffv
//
LOCUS       XP_053926163             356 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-N-acetylneuraminide alpha-2,8-sialyltransferase [Cuculus
            canorus].
ACCESSION   XP_053926163
VERSION     XP_053926163.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070188.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..356
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..356
                     /product="alpha-N-acetylneuraminide
                     alpha-2,8-sialyltransferase"
                     /calculated_mol_wt=40382
     Region          73..344
                     /region_name="GT29_ST8SIA1"
                     /note="alpha-N-acetylneuraminide
                     alpha-2,8-sialyltransferase 1; cd23989"
                     /db_xref="CDD:467717"
     Site            order(142..144,165..166,188,274..276,294..295,308..310,
                     322)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:467717"
     CDS             1..356
                     /gene="ST8SIA1"
                     /coded_by="XM_054070188.1:172..1242"
                     /db_xref="GeneID:104059493"
ORIGIN      
        1 mlergpgprr rcgarrrmaw kwprtrlpvg asalgvfvlc wlyvfpvyrl pdekeivqgv
       61 llqqgkawrr nqtavtlfrk lleeccdpgr lfamtklnsp mgknlwfdge flysftidna
      121 tyslfpqatp fqlplkkcsv vgnggilkks gcgkqidqad fvmrcnlppl sseyskdvgs
      181 ktqlvtanps iiqkrfqnll wsrkafvdsv kvynqsyiym pafsmktgtg pslrvyytle
      241 dfgakqavlf anpnflrdig kfwkskgiha krlstglflv saalglceev tiygfwpfsv
      301 dlhgkfishh yydnvlpdsg fhampeeflq lwflhksgvl rmqlepcedp liqssa
//
LOCUS       XP_053926183             356 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-N-acetylneuraminide alpha-2,8-sialyltransferase [Cuculus
            canorus].
ACCESSION   XP_053926183
VERSION     XP_053926183.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070208.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..356
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..356
                     /product="alpha-N-acetylneuraminide
                     alpha-2,8-sialyltransferase"
                     /calculated_mol_wt=40382
     Region          73..344
                     /region_name="GT29_ST8SIA1"
                     /note="alpha-N-acetylneuraminide
                     alpha-2,8-sialyltransferase 1; cd23989"
                     /db_xref="CDD:467717"
     Site            order(142..144,165..166,188,274..276,294..295,308..310,
                     322)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:467717"
     CDS             1..356
                     /gene="ST8SIA1"
                     /coded_by="XM_054070208.1:173..1243"
                     /db_xref="GeneID:104059493"
ORIGIN      
        1 mlergpgprr rcgarrrmaw kwprtrlpvg asalgvfvlc wlyvfpvyrl pdekeivqgv
       61 llqqgkawrr nqtavtlfrk lleeccdpgr lfamtklnsp mgknlwfdge flysftidna
      121 tyslfpqatp fqlplkkcsv vgnggilkks gcgkqidqad fvmrcnlppl sseyskdvgs
      181 ktqlvtanps iiqkrfqnll wsrkafvdsv kvynqsyiym pafsmktgtg pslrvyytle
      241 dfgakqavlf anpnflrdig kfwkskgiha krlstglflv saalglceev tiygfwpfsv
      301 dlhgkfishh yydnvlpdsg fhampeeflq lwflhksgvl rmqlepcedp liqssa
//
LOCUS       XP_053926194             550 aa            linear   VRT 09-MAR-2023
DEFINITION  N-acetylglucosamine-6-sulfatase [Cuculus canorus].
ACCESSION   XP_053926194
VERSION     XP_053926194.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070219.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..550
                     /product="N-acetylglucosamine-6-sulfatase"
                     /calculated_mol_wt=61471
     Region          42..491
                     /region_name="G6S"
                     /note="glucosamine (N-acetyl)-6-sulfatase(G6S, GNS) AND
                     sulfatase 1(SULF1); cd16147"
                     /db_xref="CDD:293766"
     Site            order(51..52,87,145,147,231,322..323)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:293766"
     Site            order(51..52,87,145,147,231,323)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:293766"
     CDS             1..550
                     /gene="GNS"
                     /coded_by="XM_054070219.1:41..1693"
                     /db_xref="GeneID:104061580"
ORIGIN      
        1 mralgaalas rgpgsrrfam aaaalrglal aallavatra hrpnvvlilt ddqdvclggm
       61 tplkktnali aqmgitflna yvpsalccps rasiltgkyp hnhhvvnntl egncssklwq
      121 kiqepytfpa llksmcgyqt ffagkylney gaedaggvgh vppgwsfwya leknskyyny
      181 tlsvngkarr hgenysvdyl tdvlanmsld fleyksnfep ffmmistpap hspwtaapqy
      241 ansfqnvsap rnsnfnihgk nkhwlirqak tpmtnssiqf lddayrkrwq tllsvddlie
      301 klvkklelng eldntyifyt sdngfhtgqf slpidkrqly efdikvpllv rgpgikpnqt
      361 skllvanidl gptildiagy dlnktqmdgm sllpllrgdk nvtwrsdflv eyqgegyngs
      421 dptcpglgpg vthcfpdcvc edsynntyac vrtlstswdl qycefddrev fvevynltad
      481 phqinniakt idqeilekmn yrlmmlqscs gatcrtpgvf dpgyrfdprl mfsnhgvrar
      541 rfsaqslqgi
//
LOCUS       XP_053926206             402 aa            linear   VRT 09-MAR-2023
DEFINITION  adipocyte plasma membrane-associated protein-like isoform X1
            [Cuculus canorus].
ACCESSION   XP_053926206
VERSION     XP_053926206.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070231.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..402
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..402
                     /product="adipocyte plasma membrane-associated
                     protein-like isoform X1"
                     /calculated_mol_wt=44471
     Region          80..>299
                     /region_name="YvrE"
                     /note="Sugar lactone lactonase YvrE [Carbohydrate
                     transport and metabolism]; COG3386"
                     /db_xref="CDD:442613"
     CDS             1..402
                     /gene="LOC104061590"
                     /coded_by="XM_054070231.1:59..1267"
                     /db_xref="GeneID:104061590"
ORIGIN      
        1 metrrapcgg ragqqccpws sraastrfpa wgfaaavlva fasvyflpsp idpepfifek
       61 pppalvgplq vnkklqsgqr iftgqlkgpe sftvdgegni ytgtvdgklw misgdrlhfi
      121 tqmgqdvpgc gtpdyepicg rphgvrmdqd gnlivvdsyl glykvdprtg ektlllssak
      181 gvdglpfkfl ngleiskkrm fyftdssskw grrhhkyevi etnhlgrlla ynpitrtgrt
      241 vlsglymang ialspyedyi liaetsicri irywvsgana gkkevfvdnl pgypdnirls
      301 ntglyrvgis tarlpgffpp fldalgpypf lkrfiakvip lsfysiflhk hglfleindk
      361 gdivasfhdp dgsvtwavsd vfehdgkmyl gntelpflvv lq
//
LOCUS       XP_053926211             392 aa            linear   VRT 09-MAR-2023
DEFINITION  adipocyte plasma membrane-associated protein-like isoform X2
            [Cuculus canorus].
ACCESSION   XP_053926211
VERSION     XP_053926211.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070236.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..392
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..392
                     /product="adipocyte plasma membrane-associated
                     protein-like isoform X2"
                     /calculated_mol_wt=43452
     Region          96..>289
                     /region_name="YvrE"
                     /note="Sugar lactone lactonase YvrE [Carbohydrate
                     transport and metabolism]; COG3386"
                     /db_xref="CDD:442613"
     CDS             1..392
                     /gene="LOC104061590"
                     /coded_by="XM_054070236.1:68..1246"
                     /db_xref="GeneID:104061590"
ORIGIN      
        1 metrrapcgg ragqqccpws sraastrfpa wgfaaavlva fasvyflpsp idpepfifek
       61 pppalvgplq vnkklqsgqr iftgqlkgni ytgtvdgklw misgdrlhfi tqmgqdvpgc
      121 gtpdyepicg rphgvrmdqd gnlivvdsyl glykvdprtg ektlllssak gvdglpfkfl
      181 ngleiskkrm fyftdssskw grrhhkyevi etnhlgrlla ynpitrtgrt vlsglymang
      241 ialspyedyi liaetsicri irywvsgana gkkevfvdnl pgypdnirls ntglyrvgis
      301 tarlpgffpp fldalgpypf lkrfiakvip lsfysiflhk hglfleindk gdivasfhdp
      361 dgsvtwavsd vfehdgkmyl gntelpflvv lq
//
LOCUS       XP_053926220             381 aa            linear   VRT 09-MAR-2023
DEFINITION  adipocyte plasma membrane-associated protein-like isoform X3
            [Cuculus canorus].
ACCESSION   XP_053926220
VERSION     XP_053926220.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070245.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..381
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..381
                     /product="adipocyte plasma membrane-associated
                     protein-like isoform X3"
                     /calculated_mol_wt=42206
     Region          59..>278
                     /region_name="YvrE"
                     /note="Sugar lactone lactonase YvrE [Carbohydrate
                     transport and metabolism]; COG3386"
                     /db_xref="CDD:442613"
     CDS             1..381
                     /gene="LOC104061590"
                     /coded_by="XM_054070245.1:16..1161"
                     /db_xref="GeneID:104061590"
ORIGIN      
        1 mpagkrfpaw gfaaavlvaf asvyflpspi dpepfifekp ppalvgplqv nkklqsgqri
       61 ftgqlkgpes ftvdgegniy tgtvdgklwm isgdrlhfit qmgqdvpgcg tpdyepicgr
      121 phgvrmdqdg nlivvdsylg lykvdprtge ktlllssakg vdglpfkfln gleiskkrmf
      181 yftdssskwg rrhhkyevie tnhlgrllay npitrtgrtv lsglymangi alspyedyil
      241 iaetsicrii rywvsganag kkevfvdnlp gypdnirlsn tglyrvgist arlpgffppf
      301 ldalgpypfl krfiakvipl sfysiflhkh glfleindkg divasfhdpd gsvtwavsdv
      361 fehdgkmylg ntelpflvvl q
//
LOCUS       XP_053926229             376 aa            linear   VRT 09-MAR-2023
DEFINITION  adipocyte plasma membrane-associated protein-like isoform X4
            [Cuculus canorus].
ACCESSION   XP_053926229
VERSION     XP_053926229.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070254.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..376
                     /product="adipocyte plasma membrane-associated
                     protein-like isoform X4"
                     /calculated_mol_wt=41696
     Region          54..>273
                     /region_name="YvrE"
                     /note="Sugar lactone lactonase YvrE [Carbohydrate
                     transport and metabolism]; COG3386"
                     /db_xref="CDD:442613"
     CDS             1..376
                     /gene="LOC104061590"
                     /coded_by="XM_054070254.1:100..1230"
                     /db_xref="GeneID:104061590"
ORIGIN      
        1 mfpawgfaaa vlvafasvyf lpspidpepf ifekpppalv gplqvnkklq sgqriftgql
       61 kgpesftvdg egniytgtvd gklwmisgdr lhfitqmgqd vpgcgtpdye picgrphgvr
      121 mdqdgnlivv dsylglykvd prtgektlll ssakgvdglp fkflngleis kkrmfyftds
      181 sskwgrrhhk yevietnhlg rllaynpitr tgrtvlsgly mangialspy edyiliaets
      241 icriirywvs ganagkkevf vdnlpgypdn irlsntglyr vgistarlpg ffppfldalg
      301 pypflkrfia kviplsfysi flhkhglfle indkgdivas fhdpdgsvtw avsdvfehdg
      361 kmylgntelp flvvlq
//
LOCUS       XP_053926234             306 aa            linear   VRT 09-MAR-2023
DEFINITION  adipocyte plasma membrane-associated protein-like isoform X5
            [Cuculus canorus].
ACCESSION   XP_053926234
VERSION     XP_053926234.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070259.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..306
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..306
                     /product="adipocyte plasma membrane-associated
                     protein-like isoform X5"
                     /calculated_mol_wt=34152
     Region          10..>203
                     /region_name="YvrE"
                     /note="Sugar lactone lactonase YvrE [Carbohydrate
                     transport and metabolism]; COG3386"
                     /db_xref="CDD:442613"
     CDS             1..306
                     /gene="LOC104061590"
                     /coded_by="XM_054070259.1:23..943"
                     /db_xref="GeneID:104061590"
ORIGIN      
        1 mgniytgtvd gklwmisgdr lhfitqmgqd vpgcgtpdye picgrphgvr mdqdgnlivv
       61 dsylglykvd prtgektlll ssakgvdglp fkflngleis kkrmfyftds sskwgrrhhk
      121 yevietnhlg rllaynpitr tgrtvlsgly mangialspy edyiliaets icriirywvs
      181 ganagkkevf vdnlpgypdn irlsntglyr vgistarlpg ffppfldalg pypflkrfia
      241 kviplsfysi flhkhglfle indkgdivas fhdpdgsvtw avsdvfehdg kmylgntelp
      301 flvvlq
//
LOCUS       XP_053926246             476 aa            linear   VRT 09-MAR-2023
DEFINITION  protein transport protein Sec61 subunit alpha isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053926246
VERSION     XP_053926246.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070271.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..476
                     /product="protein transport protein Sec61 subunit alpha
                     isoform X1"
                     /calculated_mol_wt=52099
     Region          1..471
                     /region_name="PTZ00219"
                     /note="Sec61 alpha subunit; Provisional"
                     /db_xref="CDD:185519"
     CDS             1..476
                     /gene="SEC61A2"
                     /coded_by="XM_054070271.1:155..1585"
                     /db_xref="GeneID:104066466"
ORIGIN      
        1 mgikflevik pfcavlpeiq kperkiqfre kvlwtaitlf iflvccqipl fgimssdsad
       61 pfywmrvila snrgtlmelg ispivtsgli mqllagakii evgdtpkdra lfngaqklfg
      121 miitigqaiv yvmtgmygdp aemgagicll iiiqlfvagl ivllldellq kgyglgsgis
      181 lfiatnicet ivwkafsptt intgrgtefe gavialfhll atrtdkvral reafyrqnlp
      241 nlmnliatvf vfavviyfqg frvdlpiksa ryrgqyssyp iklfytsnip iilqsalvsn
      301 lyvisqmlsv rfsgnflvnl lgqwadvsgg gparsypvgg lcyylsppes mgaifedpvh
      361 vivyiifmlg scaffsktwi evsgssakdv akqlkeqqmv mrghrdtsmv helnryipta
      421 aafgglciga lsvladflga igsgtgilla vtiiyqyfei fvkeqaevgg vgalff
//
LOCUS       XP_053926254             423 aa            linear   VRT 09-MAR-2023
DEFINITION  protein transport protein Sec61 subunit alpha isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053926254
VERSION     XP_053926254.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070279.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..423
                     /product="protein transport protein Sec61 subunit alpha
                     isoform X2"
                     /calculated_mol_wt=45907
     Region          1..418
                     /region_name="PTZ00219"
                     /note="Sec61 alpha subunit; Provisional"
                     /db_xref="CDD:185519"
     CDS             1..423
                     /gene="SEC61A2"
                     /coded_by="XM_054070279.1:400..1671"
                     /db_xref="GeneID:104066466"
ORIGIN      
        1 mssdsadpfy wmrvilasnr gtlmelgisp ivtsglimql lagakiievg dtpkdralfn
       61 gaqklfgmii tigqaivyvm tgmygdpaem gagiclliii qlfvaglivl lldellqkgy
      121 glgsgislfi atnicetivw kafspttint grgtefegav ialfhllatr tdkvralrea
      181 fyrqnlpnlm nliatvfvfa vviyfqgfrv dlpiksaryr gqyssypikl fytsnipiil
      241 qsalvsnlyv isqmlsvrfs gnflvnllgq wadvsgggpa rsypvgglcy ylsppesmga
      301 ifedpvhviv yiifmlgsca ffsktwievs gssakdvakq lkeqqmvmrg hrdtsmvhel
      361 nryiptaaaf gglcigalsv ladflgaigs gtgillavti iyqyfeifvk eqaevggvga
      421 lff
//
LOCUS       XP_053926265             423 aa            linear   VRT 09-MAR-2023
DEFINITION  protein transport protein Sec61 subunit alpha isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053926265
VERSION     XP_053926265.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070290.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..423
                     /product="protein transport protein Sec61 subunit alpha
                     isoform X2"
                     /calculated_mol_wt=45907
     Region          1..418
                     /region_name="PTZ00219"
                     /note="Sec61 alpha subunit; Provisional"
                     /db_xref="CDD:185519"
     CDS             1..423
                     /gene="SEC61A2"
                     /coded_by="XM_054070290.1:379..1650"
                     /db_xref="GeneID:104066466"
ORIGIN      
        1 mssdsadpfy wmrvilasnr gtlmelgisp ivtsglimql lagakiievg dtpkdralfn
       61 gaqklfgmii tigqaivyvm tgmygdpaem gagiclliii qlfvaglivl lldellqkgy
      121 glgsgislfi atnicetivw kafspttint grgtefegav ialfhllatr tdkvralrea
      181 fyrqnlpnlm nliatvfvfa vviyfqgfrv dlpiksaryr gqyssypikl fytsnipiil
      241 qsalvsnlyv isqmlsvrfs gnflvnllgq wadvsgggpa rsypvgglcy ylsppesmga
      301 ifedpvhviv yiifmlgsca ffsktwievs gssakdvakq lkeqqmvmrg hrdtsmvhel
      361 nryiptaaaf gglcigalsv ladflgaigs gtgillavti iyqyfeifvk eqaevggvga
      421 lff
//
LOCUS       XP_053926276             457 aa            linear   VRT 09-MAR-2023
DEFINITION  protein transport protein Sec61 subunit alpha isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053926276
VERSION     XP_053926276.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070301.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..457
                     /product="protein transport protein Sec61 subunit alpha
                     isoform X3"
                     /calculated_mol_wt=49813
     Region          7..452
                     /region_name="PTZ00219"
                     /note="Sec61 alpha subunit; Provisional"
                     /db_xref="CDD:185519"
     CDS             1..457
                     /gene="SEC61A2"
                     /coded_by="XM_054070301.1:16..1389"
                     /db_xref="GeneID:104066466"
ORIGIN      
        1 mvhggeiqfr ekvlwtaitl fiflvccqip lfgimssdsa dpfywmrvil asnrgtlmel
       61 gispivtsgl imqllagaki ievgdtpkdr alfngaqklf gmiitigqai vyvmtgmygd
      121 paemgagicl liiiqlfvag livllldell qkgyglgsgi slfiatnice tivwkafspt
      181 tintgrgtef egavialfhl latrtdkvra lreafyrqnl pnlmnliatv fvfavviyfq
      241 gfrvdlpiks aryrgqyssy piklfytsni piilqsalvs nlyvisqmls vrfsgnflvn
      301 llgqwadvsg ggparsypvg glcyylsppe smgaifedpv hvivyiifml gscaffsktw
      361 ievsgssakd vakqlkeqqm vmrghrdtsm vhelnryipt aaafgglcig alsvladflg
      421 aigsgtgill avtiiyqyfe ifvkeqaevg gvgalff
//
LOCUS       XP_053926298             220 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP-sugar pyrophosphatase [Cuculus canorus].
ACCESSION   XP_053926298
VERSION     XP_053926298.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070323.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..220
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..220
                     /product="ADP-sugar pyrophosphatase"
                     /calculated_mol_wt=24311
     Region          60..206
                     /region_name="NUDIX_ADPRase_Nudt5"
                     /note="ADP-ribose pyrophosphatase; cd18888"
                     /db_xref="CDD:467598"
     CDS             1..220
                     /gene="NUDT5"
                     /coded_by="XM_054070323.1:178..840"
                     /db_xref="GeneID:104066285"
ORIGIN      
        1 maaetstdvp kparqsvlke eviverkwlk leettytdpf gktrtwetvk rtgnkkgvsa
       61 dgvaviavlq rtlhydcivl vkqfrpping yclefpagli eenetaesaa lreleeetgy
      121 kgeviectpa lcldpglsns tthivsvtin gdeaantrpk qklddgefve visvpkddll
      181 qrindliaee hiavdarvyt yalalkraae kpvqvpfmkl
//
LOCUS       XP_009558840             172 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM180A isoform X1 [Cuculus canorus].
ACCESSION   XP_009558840
VERSION     XP_009558840.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560545.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..172
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..172
                     /product="protein FAM180A isoform X1"
                     /calculated_mol_wt=19932
     Region          28..163
                     /region_name="FAM180"
                     /note="FAM180 family; pfam15173"
                     /db_xref="CDD:434515"
     CDS             1..172
                     /gene="FAM180A"
                     /coded_by="XM_009560545.2:199..717"
                     /db_xref="GeneID:104058954"
ORIGIN      
        1 mlwktlllll fyysvhatvt hrwsramlfp aaqrfrrssa aflnpvlqns ledvvllyef
       61 llaeldidkg qriaikdeel sslrkaaefd iicneiipks iteirrlssr lssyprvlkk
      121 edfertvltm vytayraaqs qghqkdvwae sfvnlykalk hdlmfpynkg ps
//
LOCUS       XP_053926319             161 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM180A isoform X2 [Cuculus canorus].
ACCESSION   XP_053926319
VERSION     XP_053926319.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070344.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..161
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..161
                     /product="protein FAM180A isoform X2"
                     /calculated_mol_wt=18474
     Region          17..152
                     /region_name="FAM180"
                     /note="FAM180 family; pfam15173"
                     /db_xref="CDD:434515"
     CDS             1..161
                     /gene="FAM180A"
                     /coded_by="XM_054070344.1:1052..1537"
                     /db_xref="GeneID:104058954"
ORIGIN      
        1 mknyssscnc ffcntmlfpa aqrfrrssaa flnpvlqnsl edvvllyefl laeldidkgq
       61 riaikdeels slrkaaefdi icneiipksi teirrlssrl ssyprvlkke dfertvltmv
      121 ytayraaqsq ghqkdvwaes fvnlykalkh dlmfpynkgp s
//
LOCUS       XP_053926326             161 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM180A isoform X2 [Cuculus canorus].
ACCESSION   XP_053926326
VERSION     XP_053926326.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070351.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..161
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..161
                     /product="protein FAM180A isoform X2"
                     /calculated_mol_wt=18474
     Region          17..152
                     /region_name="FAM180"
                     /note="FAM180 family; pfam15173"
                     /db_xref="CDD:434515"
     CDS             1..161
                     /gene="FAM180A"
                     /coded_by="XM_054070351.1:548..1033"
                     /db_xref="GeneID:104058954"
ORIGIN      
        1 mknyssscnc ffcntmlfpa aqrfrrssaa flnpvlqnsl edvvllyefl laeldidkgq
       61 riaikdeels slrkaaefdi icneiipksi teirrlssrl ssyprvlkke dfertvltmv
      121 ytayraaqsq ghqkdvwaes fvnlykalkh dlmfpynkgp s
//
LOCUS       XP_009558839             118 aa            linear   VRT 09-MAR-2023
DEFINITION  myotrophin [Cuculus canorus].
ACCESSION   XP_009558839
VERSION     XP_009558839.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560544.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..118
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..118
                     /product="myotrophin"
                     /calculated_mol_wt=12741
     Region          <6..>104
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          6..32
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(7..8,11..13,15..16,20,23,32,34,36,40..41,44..46,
                     48..49,53,56,65,67,69,73..74,77..79,81..82,86,89)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          34..65
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          67..97
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..118
                     /gene="MTPN"
                     /coded_by="XM_009560544.2:251..607"
                     /db_xref="GeneID:104058953"
ORIGIN      
        1 msdkefmwal kngdldevkd yvakgedvnr tleggrkplh yaadcgqlei veflllkgad
       61 inapdkhnit pllsavyegh vscvklllsk gadktvkgpd gltafeatdn qaiktllq
//
LOCUS       XP_053926341            1000 aa            linear   VRT 09-MAR-2023
DEFINITION  chloride channel protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053926341
VERSION     XP_053926341.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070366.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1000
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1000
                     /product="chloride channel protein 1 isoform X1"
                     /calculated_mol_wt=111529
     Region          85..603
                     /region_name="ClC_1_like"
                     /note="ClC-1-like chloride channel proteins. This CD
                     includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is
                     expressed in skeletal muscle and its mutation leads to
                     both recessively and dominantly-inherited forms of muscle
                     stiffness or myotonia. ClC-K is...; cd03683"
                     /db_xref="CDD:239655"
     Site            order(156..160,198..202,450..454,589)
                     /site_type="active"
                     /note="putative Cl- selectivity filter [active]"
                     /db_xref="CDD:239655"
     Site            200
                     /site_type="active"
                     /note="putative pore gating glutamate residue [active]"
                     /db_xref="CDD:239655"
     Region          616..874
                     /region_name="CBS_pair_SF"
                     /note="Two tandem repeats of the cystathionine
                     beta-synthase (CBS pair) domains superfamily; cl15354"
                     /db_xref="CDD:449531"
     Site            order(621,623..625,647..649,853,865,867,869..870,873)
                     /site_type="other"
                     /note="ligand binding site II [chemical binding]"
                     /db_xref="CDD:341358"
     Region          621..825
                     /region_name="CBS repeat"
                     /note="CBS repeat [structural motif]"
                     /db_xref="CDD:341358"
     Site            order(647,661,666..667,670,831,853..855,869)
                     /site_type="other"
                     /note="ligand binding site I [chemical binding]"
                     /db_xref="CDD:341358"
     Region          831..873
                     /region_name="CBS repeat"
                     /note="CBS repeat [structural motif]"
                     /db_xref="CDD:341358"
     CDS             1..1000
                     /gene="CLCN1"
                     /coded_by="XM_054070366.1:150..3152"
                     /db_xref="GeneID:104064389"
ORIGIN      
        1 mtgdasptka fryqetllyg qytdqitrfp ekeaakllnk kqvqnnyerp lkrdsqveik
       61 eehyskcqdc arriqkyvtr klgedwiflv llglvmalvs wgmdyasaks lqaykwmyre
      121 lhpnvpmqyl vwvafplali lfaatfchlv spqavgsgip elktimrgvv lkeyltlkaf
      181 vakvvaltag lgsgmpvgke gpfvhiasic avvlskfmsi fcgvyeqpyy ytdvltvgca
      241 vgvgccfgtp lggvlfsiev tstyfavrny wrgffaatfs afifrvlavw nkdavtital
      301 frtnfrmdfp fdlqelpafa vigicsgflg affvylnrqv vlcirrhtal sefltkyrlv
      361 ypgvitflia tvtfppgfgq fmagelmpre aistlfdnyt wvkytgdpqv lgksaawihp
      421 kvsvfviill fflvkfcmav iattmpipcg gfmpvfvlga afgrligeim aslfpkgilf
      481 dgivyqilpg gyavigespf lsfsssdplp mtflvdmmcc fymtvifspf sfstlpgkga
      541 aaltgavsht vstavicfel tgqishilpm mvavilanmv aqslqpslyd siiqvkklpy
      601 lpdlgwnhis kynifvedim vqdvkfvssn ctyrdlqtll qsttvktlpl vdspetmill
      661 gsverselqa llqtqisper rrllnrekqq klseapydgh skgpwanlpk lkhesfayvd
      721 ededtdekae lpqppsptps ypeepngpks plkqmpetle pqqlpgnfrr lrqliqqllc
      781 hynlpletes avqepvevvd tmrpeeidaw eqeelnknvc fdschidpsp fqlvertslh
      841 kthtlfsllg lshayitsmg klrgvlalee lqkaiegstr sgvrlrppla sfrdtkrtsi
      901 ssekasqatq vwswqdngtv aeeqaanlgt esplppsshs pqpshlheeg evpcstyatd
      961 teleemeltg pvadsfsdil kdislrstdi eedededvpl
//
LOCUS       XP_053926348             957 aa            linear   VRT 09-MAR-2023
DEFINITION  chloride channel protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053926348
VERSION     XP_053926348.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070373.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..957
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..957
                     /product="chloride channel protein 1 isoform X2"
                     /calculated_mol_wt=106753
     Region          85..560
                     /region_name="ClC_1_like"
                     /note="ClC-1-like chloride channel proteins. This CD
                     includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is
                     expressed in skeletal muscle and its mutation leads to
                     both recessively and dominantly-inherited forms of muscle
                     stiffness or myotonia. ClC-K is...; cd03683"
                     /db_xref="CDD:239655"
     Site            order(156..160,198..202,450..454,546)
                     /site_type="active"
                     /note="putative Cl- selectivity filter [active]"
                     /db_xref="CDD:239655"
     Site            200
                     /site_type="active"
                     /note="putative pore gating glutamate residue [active]"
                     /db_xref="CDD:239655"
     Region          573..831
                     /region_name="CBS_pair_SF"
                     /note="Two tandem repeats of the cystathionine
                     beta-synthase (CBS pair) domains superfamily; cl15354"
                     /db_xref="CDD:449531"
     Site            order(578,580..582,604..606,810,822,824,826..827,830)
                     /site_type="other"
                     /note="ligand binding site II [chemical binding]"
                     /db_xref="CDD:341358"
     Region          578..782
                     /region_name="CBS repeat"
                     /note="CBS repeat [structural motif]"
                     /db_xref="CDD:341358"
     Site            order(604,618,623..624,627,788,810..812,826)
                     /site_type="other"
                     /note="ligand binding site I [chemical binding]"
                     /db_xref="CDD:341358"
     Region          788..830
                     /region_name="CBS repeat"
                     /note="CBS repeat [structural motif]"
                     /db_xref="CDD:341358"
     CDS             1..957
                     /gene="CLCN1"
                     /coded_by="XM_054070373.1:149..3022"
                     /db_xref="GeneID:104064389"
ORIGIN      
        1 mtgdasptka fryqetllyg qytdqitrfp ekeaakllnk kqvqnnyerp lkrdsqveik
       61 eehyskcqdc arriqkyvtr klgedwiflv llglvmalvs wgmdyasaks lqaykwmyre
      121 lhpnvpmqyl vwvafplali lfaatfchlv spqavgsgip elktimrgvv lkeyltlkaf
      181 vakvvaltag lgsgmpvgke gpfvhiasic avvlskfmsi fcgvyeqpyy ytdvltvgca
      241 vgvgccfgtp lggvlfsiev tstyfavrny wrgffaatfs afifrvlavw nkdavtital
      301 frtnfrmdfp fdlqelpafa vigicsgflg affvylnrqv vlcirrhtal sefltkyrlv
      361 ypgvitflia tvtfppgfgq fmagelmpre aistlfdnyt wvkytgdpqv lgksaawihp
      421 kvsvfviill fflvkfcmav iattmpipcg gfmpvfvlga afgrligeim aslfpkgilf
      481 dgivyqilpg gyavigaaal tgavshtvst avicfeltgq ishilpmmva vilanmvaqs
      541 lqpslydsii qvkklpylpd lgwnhiskyn ifvedimvqd vkfvssncty rdlqtllqst
      601 tvktlplvds petmillgsv erselqallq tqisperrrl lnrekqqkls eapydghskg
      661 pwanlpklkh esfayvdede dtdekaelpq ppsptpsype epngpksplk qmpetlepqq
      721 lpgnfrrlrq liqqllchyn lpletesavq epvevvdtmr peeidaweqe elnknvcfds
      781 chidpspfql vertslhkth tlfsllglsh ayitsmgklr gvlaleelqk aiegstrsgv
      841 rlrpplasfr dtkrtsisse kasqatqvws wqdngtvaee qaanlgtesp lppsshspqp
      901 shlheegevp cstyatdtel eemeltgpva dsfsdilkdi slrstdieed ededvpl
//
LOCUS       XP_053926367             385 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM131B isoform X1 [Cuculus canorus].
ACCESSION   XP_053926367
VERSION     XP_053926367.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070392.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..385
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..385
                     /product="protein FAM131B isoform X1"
                     /calculated_mol_wt=42472
     Region          67..378
                     /region_name="FAM131"
                     /note="Putative cell signalling; pfam15010"
                     /db_xref="CDD:464442"
     CDS             1..385
                     /gene="FAM131B"
                     /coded_by="XM_054070392.1:274..1431"
                     /db_xref="GeneID:104064350"
ORIGIN      
        1 mgcigsrtvg neviavdwkg lkdvdqinmd stsslhgssf hrpsteqtrt dfswdginls
       61 medttsilpk lkrnsnaygi galakssfsg plgisrsmkd hvtkptamgq grvahmiewq
      121 gwgkgnsqqq qhthetarkd adaysdlsdg ekearflagv meqfaiseat lmawssmdge
      181 dvsvnsnqen pggnysenyq elmesqehma qtqydswphs yvsqgmyclg ssdawetsdq
      241 sliaspatgs ylgqnfdesq tnlqesilmq ssllqqqqlq qqrqeqnfiq stglvhvwpl
      301 qtaqggaess tymedhiede gntrlekapl lnkkpsleed davcrdlesl spreemehaa
      361 lsrkvsdvts sgvqsfdeee getnn
//
LOCUS       XP_053926375             382 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM131B isoform X2 [Cuculus canorus].
ACCESSION   XP_053926375
VERSION     XP_053926375.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070400.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..382
                     /product="protein FAM131B isoform X2"
                     /calculated_mol_wt=42205
     Region          67..375
                     /region_name="FAM131"
                     /note="Putative cell signalling; pfam15010"
                     /db_xref="CDD:464442"
     CDS             1..382
                     /gene="FAM131B"
                     /coded_by="XM_054070400.1:274..1422"
                     /db_xref="GeneID:104064350"
ORIGIN      
        1 mgcigsrtvg neviavdwkg lkdvdqinmd stsslhgssf hrpsteqtrt dfswdginls
       61 medttsilpk lkrnsnaygi galakssfsg isrsmkdhvt kptamgqgrv ahmiewqgwg
      121 kgnsqqqqht hetarkdada ysdlsdgeke arflagvmeq faiseatlma wssmdgedvs
      181 vnsnqenpgg nysenyqelm esqehmaqtq ydswphsyvs qgmyclgssd awetsdqsli
      241 aspatgsylg qnfdesqtnl qesilmqssl lqqqqlqqqr qeqnfiqstg lvhvwplqta
      301 qggaesstym edhiedegnt rlekapllnk kpsleeddav crdleslspr eemehaalsr
      361 kvsdvtssgv qsfdeeeget nn
//
LOCUS       XP_053926385             288 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM131B isoform X3 [Cuculus canorus].
ACCESSION   XP_053926385
VERSION     XP_053926385.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070410.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..288
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..288
                     /product="protein FAM131B isoform X3"
                     /calculated_mol_wt=32055
     Region          1..281
                     /region_name="FAM131"
                     /note="Putative cell signalling; pfam15010"
                     /db_xref="CDD:464442"
     CDS             1..288
                     /gene="FAM131B"
                     /coded_by="XM_054070410.1:154..1020"
                     /db_xref="GeneID:104064350"
ORIGIN      
        1 mkdhvtkpta mgqgrvahmi ewqgwgkgns qqqqhtheta rkdadaysdl sdgekearfl
       61 agvmeqfais eatlmawssm dgedvsvnsn qenpggnyse nyqelmesqe hmaqtqydsw
      121 phsyvsqgmy clgssdawet sdqsliaspa tgsylgqnfd esqtnlqesi lmqssllqqq
      181 qlqqqrqeqn fiqstglvhv wplqtaqgga esstymedhi edegntrlek apllnkkpsl
      241 eeddavcrdl eslspreeme haalsrkvsd vtssgvqsfd eeegetnn
//
LOCUS       XP_053926394             245 aa            linear   VRT 09-MAR-2023
DEFINITION  myoD family inhibitor domain-containing protein isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053926394
VERSION     XP_053926394.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070419.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..245
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..245
                     /product="myoD family inhibitor domain-containing protein
                     isoform X1"
                     /calculated_mol_wt=26273
     Region          73..245
                     /region_name="MDFI"
                     /note="MyoD family inhibitor; pfam15316"
                     /db_xref="CDD:464641"
     CDS             1..245
                     /gene="MDFIC"
                     /coded_by="XM_054070419.1:207..944"
                     /db_xref="GeneID:104064329"
ORIGIN      
        1 msqvreplpp gpegperapt ensslislpr dqentatedk dvkqpssnqs iqpeiqdqsv
       61 wgnrsdgeli rtqpqrlpqp ntsalergee esvkiqngrv glsngsgihn gvkhvsgdnr
      121 klsspvsekm hrkiqstlsv nsnsskkski ssvfsqkpgt spedccvhci laclfcefit
      181 lcnivlgqas cgictseacc cccgdemged cncpcdmdcg imdaccessd cleicmeccg
      241 icfps
//
LOCUS       XP_053926404             245 aa            linear   VRT 09-MAR-2023
DEFINITION  myoD family inhibitor domain-containing protein isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053926404
VERSION     XP_053926404.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070429.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..245
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..245
                     /product="myoD family inhibitor domain-containing protein
                     isoform X1"
                     /calculated_mol_wt=26273
     Region          73..245
                     /region_name="MDFI"
                     /note="MyoD family inhibitor; pfam15316"
                     /db_xref="CDD:464641"
     CDS             1..245
                     /gene="MDFIC"
                     /coded_by="XM_054070429.1:251..988"
                     /db_xref="GeneID:104064329"
ORIGIN      
        1 msqvreplpp gpegperapt ensslislpr dqentatedk dvkqpssnqs iqpeiqdqsv
       61 wgnrsdgeli rtqpqrlpqp ntsalergee esvkiqngrv glsngsgihn gvkhvsgdnr
      121 klsspvsekm hrkiqstlsv nsnsskkski ssvfsqkpgt spedccvhci laclfcefit
      181 lcnivlgqas cgictseacc cccgdemged cncpcdmdcg imdaccessd cleicmeccg
      241 icfps
//
LOCUS       XP_053926410             245 aa            linear   VRT 09-MAR-2023
DEFINITION  myoD family inhibitor domain-containing protein isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053926410
VERSION     XP_053926410.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070435.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..245
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..245
                     /product="myoD family inhibitor domain-containing protein
                     isoform X1"
                     /calculated_mol_wt=26273
     Region          73..245
                     /region_name="MDFI"
                     /note="MyoD family inhibitor; pfam15316"
                     /db_xref="CDD:464641"
     CDS             1..245
                     /gene="MDFIC"
                     /coded_by="XM_054070435.1:180..917"
                     /db_xref="GeneID:104064329"
ORIGIN      
        1 msqvreplpp gpegperapt ensslislpr dqentatedk dvkqpssnqs iqpeiqdqsv
       61 wgnrsdgeli rtqpqrlpqp ntsalergee esvkiqngrv glsngsgihn gvkhvsgdnr
      121 klsspvsekm hrkiqstlsv nsnsskkski ssvfsqkpgt spedccvhci laclfcefit
      181 lcnivlgqas cgictseacc cccgdemged cncpcdmdcg imdaccessd cleicmeccg
      241 icfps
//
LOCUS       XP_053926417             204 aa            linear   VRT 09-MAR-2023
DEFINITION  myoD family inhibitor domain-containing protein isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053926417
VERSION     XP_053926417.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070442.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..204
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..204
                     /product="myoD family inhibitor domain-containing protein
                     isoform X2"
                     /calculated_mol_wt=21617
     Region          32..204
                     /region_name="MDFI"
                     /note="MyoD family inhibitor; pfam15316"
                     /db_xref="CDD:464641"
     CDS             1..204
                     /gene="MDFIC"
                     /coded_by="XM_054070442.1:208..822"
                     /db_xref="GeneID:104064329"
ORIGIN      
        1 msqvreplpp gpegperapt ensslislpr aqpqrlpqpn tsalergeee svkiqngrvg
       61 lsngsgihng vkhvsgdnrk lsspvsekmh rkiqstlsvn snsskkskis svfsqkpgts
      121 pedccvhcil aclfcefitl cnivlgqasc gictseaccc ccgdemgedc ncpcdmdcgi
      181 mdaccessdc leicmeccgi cfps
//
LOCUS       XP_053926433             468 aa            linear   VRT 09-MAR-2023
DEFINITION  peroxisome proliferator-activated receptor alpha isoform X1
            [Cuculus canorus].
ACCESSION   XP_053926433
VERSION     XP_053926433.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070458.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..468
                     /product="peroxisome proliferator-activated receptor alpha
                     isoform X1"
                     /calculated_mol_wt=52220
     Region          101..184
                     /region_name="NR_DBD_Ppar"
                     /note="DNA-binding domain of peroxisome
                     proliferator-activated receptors (PPAR) is composed of two
                     C4-type zinc fingers; cd06965"
                     /db_xref="CDD:143523"
     Site            order(102,105,119,122,138,143,153,156)
                     /site_type="other"
                     /note="zinc binding site [ion binding]"
                     /db_xref="CDD:143523"
     Site            order(110..114,120..121,123,125,127..128,131,150..151,154,
                     157,168,171..175,177)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143523"
     Site            order(148..149,151..152)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:143523"
     Region          201..467
                     /region_name="NR_LBD_PPAR"
                     /note="The ligand binding domain of peroxisome
                     proliferator-activated receptors; cd06932"
                     /db_xref="CDD:132730"
     Site            order(275..276,280,314,318,321,330,332,355,440)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:132730"
     Site            order(285,288,292,297,302..303,305..306,309..310)
                     /site_type="other"
                     /note="coactivator recognition site [polypeptide binding]"
                     /db_xref="CDD:132730"
     Site            order(364,386,389,398,421,425,428,430..431,434..435,442)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:132730"
     CDS             1..468
                     /gene="PPARA"
                     /coded_by="XM_054070458.1:371..1777"
                     /db_xref="GeneID:104062822"
ORIGIN      
        1 mvdtenqlyp ltpleeddig splsgeflqd meniqdlsqs lgddssgals ltefqtlgng
       61 pgsdgsvitd tlspasspss infatapgsi desrsgalni ecricgdkas gyhygvhace
      121 gckgffrrti rlkliydkcd rnckiqkknr nkcqycrfqk clsvgmshna irfgrmprse
      181 kaklkaeilt genyvedsem adlkslakri hdaylknfnm nkvkariila gktnnnppfv
      241 ihdmntlcma ektlvaklva ngiqnkeaev rifhccqcts vetvteltef aksipgfsnl
      301 dlndqvtllk ygvyeaifam lasvmnkdgm lvaygngfit reflkslrkp fcdimepkfd
      361 famkfnalel ddsdislfva aiiccgdrpg lvnvghiekm qesivhvlkl hlqtnhpddi
      421 flfpkllqkm adlrqlvteh aqlvqiikkt esdahlhpll qeiyrdmy
//
LOCUS       XP_053926439             468 aa            linear   VRT 09-MAR-2023
DEFINITION  peroxisome proliferator-activated receptor alpha isoform X1
            [Cuculus canorus].
ACCESSION   XP_053926439
VERSION     XP_053926439.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070464.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..468
                     /product="peroxisome proliferator-activated receptor alpha
                     isoform X1"
                     /calculated_mol_wt=52220
     Region          101..184
                     /region_name="NR_DBD_Ppar"
                     /note="DNA-binding domain of peroxisome
                     proliferator-activated receptors (PPAR) is composed of two
                     C4-type zinc fingers; cd06965"
                     /db_xref="CDD:143523"
     Site            order(102,105,119,122,138,143,153,156)
                     /site_type="other"
                     /note="zinc binding site [ion binding]"
                     /db_xref="CDD:143523"
     Site            order(110..114,120..121,123,125,127..128,131,150..151,154,
                     157,168,171..175,177)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143523"
     Site            order(148..149,151..152)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:143523"
     Region          201..467
                     /region_name="NR_LBD_PPAR"
                     /note="The ligand binding domain of peroxisome
                     proliferator-activated receptors; cd06932"
                     /db_xref="CDD:132730"
     Site            order(275..276,280,314,318,321,330,332,355,440)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:132730"
     Site            order(285,288,292,297,302..303,305..306,309..310)
                     /site_type="other"
                     /note="coactivator recognition site [polypeptide binding]"
                     /db_xref="CDD:132730"
     Site            order(364,386,389,398,421,425,428,430..431,434..435,442)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:132730"
     CDS             1..468
                     /gene="PPARA"
                     /coded_by="XM_054070464.1:545..1951"
                     /db_xref="GeneID:104062822"
ORIGIN      
        1 mvdtenqlyp ltpleeddig splsgeflqd meniqdlsqs lgddssgals ltefqtlgng
       61 pgsdgsvitd tlspasspss infatapgsi desrsgalni ecricgdkas gyhygvhace
      121 gckgffrrti rlkliydkcd rnckiqkknr nkcqycrfqk clsvgmshna irfgrmprse
      181 kaklkaeilt genyvedsem adlkslakri hdaylknfnm nkvkariila gktnnnppfv
      241 ihdmntlcma ektlvaklva ngiqnkeaev rifhccqcts vetvteltef aksipgfsnl
      301 dlndqvtllk ygvyeaifam lasvmnkdgm lvaygngfit reflkslrkp fcdimepkfd
      361 famkfnalel ddsdislfva aiiccgdrpg lvnvghiekm qesivhvlkl hlqtnhpddi
      421 flfpkllqkm adlrqlvteh aqlvqiikkt esdahlhpll qeiyrdmy
//
LOCUS       XP_053926447             468 aa            linear   VRT 09-MAR-2023
DEFINITION  peroxisome proliferator-activated receptor alpha isoform X1
            [Cuculus canorus].
ACCESSION   XP_053926447
VERSION     XP_053926447.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070472.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..468
                     /product="peroxisome proliferator-activated receptor alpha
                     isoform X1"
                     /calculated_mol_wt=52220
     Region          101..184
                     /region_name="NR_DBD_Ppar"
                     /note="DNA-binding domain of peroxisome
                     proliferator-activated receptors (PPAR) is composed of two
                     C4-type zinc fingers; cd06965"
                     /db_xref="CDD:143523"
     Site            order(102,105,119,122,138,143,153,156)
                     /site_type="other"
                     /note="zinc binding site [ion binding]"
                     /db_xref="CDD:143523"
     Site            order(110..114,120..121,123,125,127..128,131,150..151,154,
                     157,168,171..175,177)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143523"
     Site            order(148..149,151..152)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:143523"
     Region          201..467
                     /region_name="NR_LBD_PPAR"
                     /note="The ligand binding domain of peroxisome
                     proliferator-activated receptors; cd06932"
                     /db_xref="CDD:132730"
     Site            order(275..276,280,314,318,321,330,332,355,440)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:132730"
     Site            order(285,288,292,297,302..303,305..306,309..310)
                     /site_type="other"
                     /note="coactivator recognition site [polypeptide binding]"
                     /db_xref="CDD:132730"
     Site            order(364,386,389,398,421,425,428,430..431,434..435,442)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:132730"
     CDS             1..468
                     /gene="PPARA"
                     /coded_by="XM_054070472.1:422..1828"
                     /db_xref="GeneID:104062822"
ORIGIN      
        1 mvdtenqlyp ltpleeddig splsgeflqd meniqdlsqs lgddssgals ltefqtlgng
       61 pgsdgsvitd tlspasspss infatapgsi desrsgalni ecricgdkas gyhygvhace
      121 gckgffrrti rlkliydkcd rnckiqkknr nkcqycrfqk clsvgmshna irfgrmprse
      181 kaklkaeilt genyvedsem adlkslakri hdaylknfnm nkvkariila gktnnnppfv
      241 ihdmntlcma ektlvaklva ngiqnkeaev rifhccqcts vetvteltef aksipgfsnl
      301 dlndqvtllk ygvyeaifam lasvmnkdgm lvaygngfit reflkslrkp fcdimepkfd
      361 famkfnalel ddsdislfva aiiccgdrpg lvnvghiekm qesivhvlkl hlqtnhpddi
      421 flfpkllqkm adlrqlvteh aqlvqiikkt esdahlhpll qeiyrdmy
//
LOCUS       XP_009563237             468 aa            linear   VRT 09-MAR-2023
DEFINITION  peroxisome proliferator-activated receptor alpha isoform X1
            [Cuculus canorus].
ACCESSION   XP_009563237
VERSION     XP_009563237.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009564942.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009563237.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..468
                     /product="peroxisome proliferator-activated receptor alpha
                     isoform X1"
                     /calculated_mol_wt=52220
     Region          101..184
                     /region_name="NR_DBD_Ppar"
                     /note="DNA-binding domain of peroxisome
                     proliferator-activated receptors (PPAR) is composed of two
                     C4-type zinc fingers; cd06965"
                     /db_xref="CDD:143523"
     Site            order(102,105,119,122,138,143,153,156)
                     /site_type="other"
                     /note="zinc binding site [ion binding]"
                     /db_xref="CDD:143523"
     Site            order(110..114,120..121,123,125,127..128,131,150..151,154,
                     157,168,171..175,177)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143523"
     Site            order(148..149,151..152)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:143523"
     Region          201..467
                     /region_name="NR_LBD_PPAR"
                     /note="The ligand binding domain of peroxisome
                     proliferator-activated receptors; cd06932"
                     /db_xref="CDD:132730"
     Site            order(275..276,280,314,318,321,330,332,355,440)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:132730"
     Site            order(285,288,292,297,302..303,305..306,309..310)
                     /site_type="other"
                     /note="coactivator recognition site [polypeptide binding]"
                     /db_xref="CDD:132730"
     Site            order(364,386,389,398,421,425,428,430..431,434..435,442)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:132730"
     CDS             1..468
                     /gene="PPARA"
                     /coded_by="XM_009564942.2:211..1617"
                     /db_xref="GeneID:104062822"
ORIGIN      
        1 mvdtenqlyp ltpleeddig splsgeflqd meniqdlsqs lgddssgals ltefqtlgng
       61 pgsdgsvitd tlspasspss infatapgsi desrsgalni ecricgdkas gyhygvhace
      121 gckgffrrti rlkliydkcd rnckiqkknr nkcqycrfqk clsvgmshna irfgrmprse
      181 kaklkaeilt genyvedsem adlkslakri hdaylknfnm nkvkariila gktnnnppfv
      241 ihdmntlcma ektlvaklva ngiqnkeaev rifhccqcts vetvteltef aksipgfsnl
      301 dlndqvtllk ygvyeaifam lasvmnkdgm lvaygngfit reflkslrkp fcdimepkfd
      361 famkfnalel ddsdislfva aiiccgdrpg lvnvghiekm qesivhvlkl hlqtnhpddi
      421 flfpkllqkm adlrqlvteh aqlvqiikkt esdahlhpll qeiyrdmy
//
LOCUS       XP_053926460             468 aa            linear   VRT 09-MAR-2023
DEFINITION  peroxisome proliferator-activated receptor alpha isoform X1
            [Cuculus canorus].
ACCESSION   XP_053926460
VERSION     XP_053926460.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070485.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..468
                     /product="peroxisome proliferator-activated receptor alpha
                     isoform X1"
                     /calculated_mol_wt=52220
     Region          101..184
                     /region_name="NR_DBD_Ppar"
                     /note="DNA-binding domain of peroxisome
                     proliferator-activated receptors (PPAR) is composed of two
                     C4-type zinc fingers; cd06965"
                     /db_xref="CDD:143523"
     Site            order(102,105,119,122,138,143,153,156)
                     /site_type="other"
                     /note="zinc binding site [ion binding]"
                     /db_xref="CDD:143523"
     Site            order(110..114,120..121,123,125,127..128,131,150..151,154,
                     157,168,171..175,177)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143523"
     Site            order(148..149,151..152)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:143523"
     Region          201..467
                     /region_name="NR_LBD_PPAR"
                     /note="The ligand binding domain of peroxisome
                     proliferator-activated receptors; cd06932"
                     /db_xref="CDD:132730"
     Site            order(275..276,280,314,318,321,330,332,355,440)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:132730"
     Site            order(285,288,292,297,302..303,305..306,309..310)
                     /site_type="other"
                     /note="coactivator recognition site [polypeptide binding]"
                     /db_xref="CDD:132730"
     Site            order(364,386,389,398,421,425,428,430..431,434..435,442)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:132730"
     CDS             1..468
                     /gene="PPARA"
                     /coded_by="XM_054070485.1:56..1462"
                     /db_xref="GeneID:104062822"
ORIGIN      
        1 mvdtenqlyp ltpleeddig splsgeflqd meniqdlsqs lgddssgals ltefqtlgng
       61 pgsdgsvitd tlspasspss infatapgsi desrsgalni ecricgdkas gyhygvhace
      121 gckgffrrti rlkliydkcd rnckiqkknr nkcqycrfqk clsvgmshna irfgrmprse
      181 kaklkaeilt genyvedsem adlkslakri hdaylknfnm nkvkariila gktnnnppfv
      241 ihdmntlcma ektlvaklva ngiqnkeaev rifhccqcts vetvteltef aksipgfsnl
      301 dlndqvtllk ygvyeaifam lasvmnkdgm lvaygngfit reflkslrkp fcdimepkfd
      361 famkfnalel ddsdislfva aiiccgdrpg lvnvghiekm qesivhvlkl hlqtnhpddi
      421 flfpkllqkm adlrqlvteh aqlvqiikkt esdahlhpll qeiyrdmy
//
LOCUS       XP_053926467             468 aa            linear   VRT 09-MAR-2023
DEFINITION  peroxisome proliferator-activated receptor alpha isoform X1
            [Cuculus canorus].
ACCESSION   XP_053926467
VERSION     XP_053926467.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070492.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..468
                     /product="peroxisome proliferator-activated receptor alpha
                     isoform X1"
                     /calculated_mol_wt=52220
     Region          101..184
                     /region_name="NR_DBD_Ppar"
                     /note="DNA-binding domain of peroxisome
                     proliferator-activated receptors (PPAR) is composed of two
                     C4-type zinc fingers; cd06965"
                     /db_xref="CDD:143523"
     Site            order(102,105,119,122,138,143,153,156)
                     /site_type="other"
                     /note="zinc binding site [ion binding]"
                     /db_xref="CDD:143523"
     Site            order(110..114,120..121,123,125,127..128,131,150..151,154,
                     157,168,171..175,177)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143523"
     Site            order(148..149,151..152)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:143523"
     Region          201..467
                     /region_name="NR_LBD_PPAR"
                     /note="The ligand binding domain of peroxisome
                     proliferator-activated receptors; cd06932"
                     /db_xref="CDD:132730"
     Site            order(275..276,280,314,318,321,330,332,355,440)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:132730"
     Site            order(285,288,292,297,302..303,305..306,309..310)
                     /site_type="other"
                     /note="coactivator recognition site [polypeptide binding]"
                     /db_xref="CDD:132730"
     Site            order(364,386,389,398,421,425,428,430..431,434..435,442)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:132730"
     CDS             1..468
                     /gene="PPARA"
                     /coded_by="XM_054070492.1:56..1462"
                     /db_xref="GeneID:104062822"
ORIGIN      
        1 mvdtenqlyp ltpleeddig splsgeflqd meniqdlsqs lgddssgals ltefqtlgng
       61 pgsdgsvitd tlspasspss infatapgsi desrsgalni ecricgdkas gyhygvhace
      121 gckgffrrti rlkliydkcd rnckiqkknr nkcqycrfqk clsvgmshna irfgrmprse
      181 kaklkaeilt genyvedsem adlkslakri hdaylknfnm nkvkariila gktnnnppfv
      241 ihdmntlcma ektlvaklva ngiqnkeaev rifhccqcts vetvteltef aksipgfsnl
      301 dlndqvtllk ygvyeaifam lasvmnkdgm lvaygngfit reflkslrkp fcdimepkfd
      361 famkfnalel ddsdislfva aiiccgdrpg lvnvghiekm qesivhvlkl hlqtnhpddi
      421 flfpkllqkm adlrqlvteh aqlvqiikkt esdahlhpll qeiyrdmy
//
LOCUS       XP_053926477             265 aa            linear   VRT 09-MAR-2023
DEFINITION  peroxisome proliferator-activated receptor alpha isoform X2
            [Cuculus canorus].
ACCESSION   XP_053926477
VERSION     XP_053926477.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070502.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..265
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..265
                     /product="peroxisome proliferator-activated receptor alpha
                     isoform X2"
                     /calculated_mol_wt=29899
     Region          34..264
                     /region_name="NR_LBD_PPAR"
                     /note="The ligand binding domain of peroxisome
                     proliferator-activated receptors; cd06932"
                     /db_xref="CDD:132730"
     Site            order(72..73,77,111,115,118,127,129,152,237)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:132730"
     Site            order(82,85,89,94,99..100,102..103,106..107)
                     /site_type="other"
                     /note="coactivator recognition site [polypeptide binding]"
                     /db_xref="CDD:132730"
     Site            order(161,183,186,195,218,222,225,227..228,231..232,239)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:132730"
     CDS             1..265
                     /gene="PPARA"
                     /coded_by="XM_054070502.1:1..798"
                     /db_xref="GeneID:104062822"
ORIGIN      
        1 minviatakf rkkivtsant vvfrsacqle chimpfvihd mntlcmaekt lvaklvangi
       61 qnkeaevrif hccqctsvet vteltefaks ipgfsnldln dqvtllkygv yeaifamlas
      121 vmnkdgmlva ygngfitref lkslrkpfcd imepkfdfam kfnaleldds dislfvaaii
      181 ccgdrpglvn vghiekmqes ivhvlklhlq tnhpddiflf pkllqkmadl rqlvtehaql
      241 vqiikktesd ahlhpllqei yrdmy
//
LOCUS       XP_053926491             894 aa            linear   VRT 09-MAR-2023
DEFINITION  retinoblastoma-associated protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053926491
VERSION     XP_053926491.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070516.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..894
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..894
                     /product="retinoblastoma-associated protein isoform X1"
                     /calculated_mol_wt=101933
     Region          82..196
                     /region_name="DUF3452"
                     /note="Domain of unknown function (DUF3452); pfam11934"
                     /db_xref="CDD:463402"
     Region          344..546
                     /region_name="RB_A"
                     /note="Retinoblastoma-associated protein A domain;
                     pfam01858"
                     /db_xref="CDD:460364"
     Region          610..736
                     /region_name="CYCLIN_RB"
                     /note="cyclin box found in retinoblastoma-associated
                     protein (RB) and similar proteins; cd20599"
                     /db_xref="CDD:410302"
     Site            order(610,614,617..618,621,625)
                     /site_type="other"
                     /note="E2F transcription factor binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410302"
     Site            order(674,678..679,685..686,718,721..722,726)
                     /site_type="other"
                     /note="LxCxE peptide binding site [polypeptide binding]"
                     /db_xref="CDD:410302"
     Region          733..889
                     /region_name="Rb_C"
                     /note="Rb C-terminal domain; pfam08934"
                     /db_xref="CDD:462639"
     CDS             1..894
                     /gene="RB1"
                     /coded_by="XM_054070516.1:16..2700"
                     /db_xref="GeneID:104066185"
ORIGIN      
        1 mfstfsgacr syfllaalvk slwvsfgikk ilkacrtene nvqlsgaalc pgkaynkkkk
       61 etwgvcifiv aidldemtft ftellksisi svctffqflk evdvnmdtvs tkvdstvsrl
      121 kkkydvllal yhkfertcgl iyleqpssei saelssvlvl knywitflla kgkvlqmedd
      181 lvisfqlllc vldyfiklsp pamlkepyks avtavtvngs artprrgqnr ntrtskqidt
      241 dtkvieilck ehdcnldevk nvyfssfvpf lssigvvask glpevevllk qyeelylknk
      301 didarlfldh detlqpdvia csqlertplk nnpdeelnhi lpqtpvraam nniqqlimil
      361 nsatdkpsdt liryfnnctv npkesilkrv esldhifkkk faeavgpgca eigsqryklg
      421 vrlyyrvmes mlkseeerls vqnfskllnd nifhtsllac avevimatys rnasqndgts
      481 aetdlsfpwi lnvfdlkafd fykviesfik aepsltremi khlercehri meclawqsgs
      541 plfdlikqsk eregqtdqpe ptsslnvplq hnhtaadlyl spvrpplsat stpdaqptat
      601 pqtqkpqkst slslfykkvy llaylrlrtl ffrllsdhpd lepliwtlfq htlqneyelm
      661 rdrhldqimm csmygickvk nvdlrfkiiv saykelpntn qetfkrvlir eeqydsiivf
      721 ynlvfmqklk tnilqyassr pptlspiphi prspyqfsns prrvpagnni yisplkspyk
      781 fpdgfqsptk mtprsrilvs igepfgtsek fqkinqmvcn sdgqlkrsae vsaapkplkr
      841 lrfdiegqde adgskhlpqe skfqqklaem tstrtrmqkq klndgndtsa seek
//
LOCUS       XP_053926501             911 aa            linear   VRT 09-MAR-2023
DEFINITION  retinoblastoma-associated protein isoform X2 [Cuculus canorus].
ACCESSION   XP_053926501
VERSION     XP_053926501.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070526.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..911
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..911
                     /product="retinoblastoma-associated protein isoform X2"
                     /calculated_mol_wt=103581
     Region          99..213
                     /region_name="DUF3452"
                     /note="Domain of unknown function (DUF3452); pfam11934"
                     /db_xref="CDD:463402"
     Region          361..563
                     /region_name="RB_A"
                     /note="Retinoblastoma-associated protein A domain;
                     pfam01858"
                     /db_xref="CDD:460364"
     Region          627..753
                     /region_name="CYCLIN_RB"
                     /note="cyclin box found in retinoblastoma-associated
                     protein (RB) and similar proteins; cd20599"
                     /db_xref="CDD:410302"
     Site            order(627,631,634..635,638,642)
                     /site_type="other"
                     /note="E2F transcription factor binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410302"
     Site            order(691,695..696,702..703,735,738..739,743)
                     /site_type="other"
                     /note="LxCxE peptide binding site [polypeptide binding]"
                     /db_xref="CDD:410302"
     Region          750..906
                     /region_name="Rb_C"
                     /note="Rb C-terminal domain; pfam08934"
                     /db_xref="CDD:462639"
     CDS             1..911
                     /gene="RB1"
                     /coded_by="XM_054070526.1:101..2836"
                     /db_xref="GeneID:104066185"
ORIGIN      
        1 mppkpsrrag aaarnqrssp ergpatpaap rleigeaefv vlcdalkase svrerawrty
       61 eslaaaggal aynkkkketw gvcifivaid ldemtftfte llksisisvc tffqflkevd
      121 vnmdtvstkv dstvsrlkkk ydvllalyhk fertcgliyl eqpsseisae lssvlvlkny
      181 witfllakgk vlqmeddlvi sfqlllcvld yfiklsppam lkepyksavt avtvngsart
      241 prrgqnrntr tskqidtdtk vieilckehd cnldevknvy fssfvpflss igvvaskglp
      301 evevllkqye elylknkdid arlfldhdet lqpdviacsq lertplknnp deelnhilpq
      361 tpvraamnni qqlimilnsa tdkpsdtlir yfnnctvnpk esilkrvesl dhifkkkfae
      421 avgpgcaeig sqryklgvrl yyrvmesmlk seeerlsvqn fskllndnif htsllacave
      481 vimatysrna sqndgtsaet dlsfpwilnv fdlkafdfyk viesfikaep sltremikhl
      541 ercehrimec lawqsgsplf dlikqskere gqtdqpepts slnvplqhnh taadlylspv
      601 rpplsatstp daqptatpqt qkpqkstsls lfykkvylla ylrlrtlffr llsdhpdlep
      661 liwtlfqhtl qneyelmrdr hldqimmcsm ygickvknvd lrfkiivsay kelpntnqet
      721 fkrvlireeq ydsiivfynl vfmqklktni lqyassrppt lspiphiprs pyqfsnsprr
      781 vpagnniyis plkspykfpd gfqsptkmtp rsrilvsige pfgtsekfqk inqmvcnsdg
      841 qlkrsaevsa apkplkrlrf diegqdeadg skhlpqeskf qqklaemtst rtrmqkqkln
      901 dgndtsasee k
//
LOCUS       XP_053926508             886 aa            linear   VRT 09-MAR-2023
DEFINITION  retinoblastoma-associated protein isoform X3 [Cuculus canorus].
ACCESSION   XP_053926508
VERSION     XP_053926508.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070533.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..886
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..886
                     /product="retinoblastoma-associated protein isoform X3"
                     /calculated_mol_wt=101036
     Region          74..188
                     /region_name="DUF3452"
                     /note="Domain of unknown function (DUF3452); pfam11934"
                     /db_xref="CDD:463402"
     Region          336..538
                     /region_name="RB_A"
                     /note="Retinoblastoma-associated protein A domain;
                     pfam01858"
                     /db_xref="CDD:460364"
     Region          602..728
                     /region_name="CYCLIN_RB"
                     /note="cyclin box found in retinoblastoma-associated
                     protein (RB) and similar proteins; cd20599"
                     /db_xref="CDD:410302"
     Site            order(602,606,609..610,613,617)
                     /site_type="other"
                     /note="E2F transcription factor binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410302"
     Site            order(666,670..671,677..678,710,713..714,718)
                     /site_type="other"
                     /note="LxCxE peptide binding site [polypeptide binding]"
                     /db_xref="CDD:410302"
     Region          725..881
                     /region_name="Rb_C"
                     /note="Rb C-terminal domain; pfam08934"
                     /db_xref="CDD:462639"
     CDS             1..886
                     /gene="RB1"
                     /coded_by="XM_054070533.1:16..2676"
                     /db_xref="GeneID:104066185"
ORIGIN      
        1 mndrkglaal vkslwvsfgi kkilkacrte nenvqlsgaa lcpgkaynkk kketwgvcif
       61 ivaidldemt ftftellksi sisvctffqf lkevdvnmdt vstkvdstvs rlkkkydvll
      121 alyhkfertc gliyleqpss eisaelssvl vlknywitfl lakgkvlqme ddlvisfqll
      181 lcvldyfikl sppamlkepy ksavtavtvn gsartprrgq nrntrtskqi dtdtkvieil
      241 ckehdcnlde vknvyfssfv pflssigvva skglpevevl lkqyeelylk nkdidarlfl
      301 dhdetlqpdv iacsqlertp lknnpdeeln hilpqtpvra amnniqqlim ilnsatdkps
      361 dtliryfnnc tvnpkesilk rvesldhifk kkfaeavgpg caeigsqryk lgvrlyyrvm
      421 esmlkseeer lsvqnfskll ndnifhtsll acavevimat ysrnasqndg tsaetdlsfp
      481 wilnvfdlka fdfykviesf ikaepsltre mikhlerceh rimeclawqs gsplfdlikq
      541 skeregqtdq peptsslnvp lqhnhtaadl ylspvrppls atstpdaqpt atpqtqkpqk
      601 stslslfykk vyllaylrlr tlffrllsdh pdlepliwtl fqhtlqneye lmrdrhldqi
      661 mmcsmygick vknvdlrfki ivsaykelpn tnqetfkrvl ireeqydsii vfynlvfmqk
      721 lktnilqyas srpptlspip hiprspyqfs nsprrvpagn niyisplksp ykfpdgfqsp
      781 tkmtprsril vsigepfgts ekfqkinqmv cnsdgqlkrs aevsaapkpl krlrfdiegq
      841 deadgskhlp qeskfqqkla emtstrtrmq kqklndgndt saseek
//
LOCUS       XP_053926516             885 aa            linear   VRT 09-MAR-2023
DEFINITION  retinoblastoma-associated protein isoform X4 [Cuculus canorus].
ACCESSION   XP_053926516
VERSION     XP_053926516.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070541.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..885
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..885
                     /product="retinoblastoma-associated protein isoform X4"
                     /calculated_mol_wt=100986
     Region          73..187
                     /region_name="DUF3452"
                     /note="Domain of unknown function (DUF3452); pfam11934"
                     /db_xref="CDD:463402"
     Region          335..537
                     /region_name="RB_A"
                     /note="Retinoblastoma-associated protein A domain;
                     pfam01858"
                     /db_xref="CDD:460364"
     Region          601..727
                     /region_name="CYCLIN_RB"
                     /note="cyclin box found in retinoblastoma-associated
                     protein (RB) and similar proteins; cd20599"
                     /db_xref="CDD:410302"
     Site            order(601,605,608..609,612,616)
                     /site_type="other"
                     /note="E2F transcription factor binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410302"
     Site            order(665,669..670,676..677,709,712..713,717)
                     /site_type="other"
                     /note="LxCxE peptide binding site [polypeptide binding]"
                     /db_xref="CDD:410302"
     Region          724..880
                     /region_name="Rb_C"
                     /note="Rb C-terminal domain; pfam08934"
                     /db_xref="CDD:462639"
     CDS             1..885
                     /gene="RB1"
                     /coded_by="XM_054070541.1:138..2795"
                     /db_xref="GeneID:104066185"
ORIGIN      
        1 mlffilaalv kslwvsfgik kilkacrten envqlsgaal cpgkaynkkk ketwgvcifi
       61 vaidldemtf tftellksis isvctffqfl kevdvnmdtv stkvdstvsr lkkkydvlla
      121 lyhkfertcg liyleqpsse isaelssvlv lknywitfll akgkvlqmed dlvisfqlll
      181 cvldyfikls ppamlkepyk savtavtvng sartprrgqn rntrtskqid tdtkvieilc
      241 kehdcnldev knvyfssfvp flssigvvas kglpevevll kqyeelylkn kdidarlfld
      301 hdetlqpdvi acsqlertpl knnpdeelnh ilpqtpvraa mnniqqlimi lnsatdkpsd
      361 tliryfnnct vnpkesilkr vesldhifkk kfaeavgpgc aeigsqrykl gvrlyyrvme
      421 smlkseeerl svqnfsklln dnifhtslla cavevimaty srnasqndgt saetdlsfpw
      481 ilnvfdlkaf dfykviesfi kaepsltrem ikhlercehr imeclawqsg splfdlikqs
      541 keregqtdqp eptsslnvpl qhnhtaadly lspvrpplsa tstpdaqpta tpqtqkpqks
      601 tslslfykkv yllaylrlrt lffrllsdhp dlepliwtlf qhtlqneyel mrdrhldqim
      661 mcsmygickv knvdlrfkii vsaykelpnt nqetfkrvli reeqydsiiv fynlvfmqkl
      721 ktnilqyass rpptlspiph iprspyqfsn sprrvpagnn iyisplkspy kfpdgfqspt
      781 kmtprsrilv sigepfgtse kfqkinqmvc nsdgqlkrsa evsaapkplk rlrfdiegqd
      841 eadgskhlpq eskfqqklae mtstrtrmqk qklndgndts aseek
//
LOCUS       XP_053926530             313 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: lysophosphatidic acid receptor 6 [Cuculus
            canorus].
ACCESSION   XP_053926530
VERSION     XP_053926530.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070555.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..313
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..313
                     /product="LOW QUALITY PROTEIN: lysophosphatidic acid
                     receptor 6"
                     /calculated_mol_wt=35863
     Region          15..299
                     /region_name="7tmA_LPAR6_P2Y5"
                     /note="lysophosphatidic acid receptor 6, member of the
                     class A family of seven-transmembrane G protein-coupled
                     receptors; cd15156"
                     /db_xref="CDD:320284"
     Region          15..42
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320284"
     Region          49..74
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320284"
     Site            order(70,73..74,86..91,93..94,97,142,144..148,178,
                     181..183,185..187,189..190,239,242..243,245..246,249,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320284"
     Region          86..116
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320284"
     Region          128..150
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320284"
     Region          178..207
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320284"
     Region          219..249
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320284"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320284"
     CDS             1..313
                     /gene="LPAR6"
                     /coded_by="XM_054070555.1:702..1643"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /db_xref="GeneID:104066155"
ORIGIN      
        1 mvssncsted sfkytlygci fsmvfvlgli ancvaiyift ctlkvrnett tymlnlaisd
       61 llfvftlpfr iyyfvarnwp fgdilckisv tlfytnmygs ilfltcisvd rflaivhpfq
      121 sktlrtkrna kivcvavwit vlagstpasf fqstnrrnnt eqrtcfenfs edtwktylsr
      181 ivifieivgf fiplilnvtc stmvlrtlnk pltlsrnkls kkkvlkmifv hlvifcfcfv
      241 pynvtlilys lmrtqtwinc svvtavrtmy pitlciavsn ccfdpivyyf tsdxnskfdk
      301 kkpihqttgh qil
//
LOCUS       XP_009561624            1230 aa            linear   VRT 09-MAR-2023
DEFINITION  cullin-associated NEDD8-dissociated protein 1 [Cuculus canorus].
ACCESSION   XP_009561624
VERSION     XP_009561624.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563329.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1230
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1230
                     /product="cullin-associated NEDD8-dissociated protein 1"
                     /calculated_mol_wt=136171
     Region          11..32
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          53..74
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Site            order(66..67,70,73..74,104..105,108,115..116,119,152..153,
                     156,159..160,163,193..194,197,200..201,235..236,239,
                     242..243)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:293787"
     Region          87..119
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          129..164
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          149..202
                     /region_name="HEAT_EZ"
                     /note="HEAT-like repeat; pfam13513"
                     /db_xref="CDD:463906"
     Region          175..201
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          211..243
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          255..285
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          296..359
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          372..397
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Site            order(797..798,801,804..805,836..837,840,843..844,847,
                     874..875,878,881..882,885,910..911,914,917..918,953,
                     956..957)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:293787"
     Region          817..847
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          856..886
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          894..918
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          929..958
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          1040..1202
                     /region_name="TIP120"
                     /note="TATA-binding protein interacting (TIP20);
                     pfam08623"
                     /db_xref="CDD:430111"
     CDS             1..1230
                     /gene="CAND1"
                     /coded_by="XM_009563329.2:234..3926"
                     /db_xref="GeneID:104061390"
ORIGIN      
        1 masasyhisn llekmtssdk dfrfmatndl mtelqkdsik ldddserkvv kmilklledk
       61 ngevqnlavk clgplvskvk eyqvetivdt lctnmlsdke qlrdissigl ktvigelppa
      121 ssgsalaanv ckkitgrlts aiakqedvsv qlealdimad mlsrqggllv nfhpsiltcl
      181 lpqltsprla vrkrtiialg hlvmscgnmv fvdliehllt elskndsmst trtyiqciaa
      241 isrqaghrig eylekiiplv vkfcnvddde lreyciqafe sfvrrcpkev yphvstiini
      301 clkyltydpn ynyddedede namdadggdd ddqgsddeys ddddmswkvr raaakcldav
      361 vstrhemlpe fyktvspali arfkereenv kadvfhayls llkqtrpvqs wlcdpdameq
      421 getpltmlqs qvpnivkalh kqmkeksvkt rqccfnmlte lvnvlpgalt qhvpvlvpgi
      481 ifslndksss snlkidalsc lyvilcnhsp qvfhphvqal vppvvacvgd pfykitseal
      541 lvtqqlvkvi rpldqpssfd atpyikdlft ctikrlkaad idqevkerai scmgqiicsl
      601 gdslgtdlps tlqiflerlk neitrlttvk amtliagspl kidlrpilge gvpilasflr
      661 knqralklgt lsaldilikn ysdsltaami davldelppl isesdmhvsq maisflttla
      721 kvypsslski sgsilnelig lvrspllqgg alsamleffq alvvtgtnnl gymdllrmlt
      781 gpvysqstal thkqsyysia kcvaaltrac pkegpavvgq fiqdvknsrs tdsirllall
      841 slgevghhid lsgqielksv ileafsspse evksaasyal gsisvgnlpe ylpfvlqeit
      901 sqpkrqylll hslkeiissa svlglkpyve niwalllkhc ecaeegtrnv vaeclgkltl
      961 idpetllprl kgylasgssy arssvvtavk ftisdhpqpi dpllkncigd flktledpdl
     1021 nvrrvalvtf nsaahnkpsl irdlldtvlp hlynetkvrk elirevemgp fkhtvddgld
     1081 irkaafecmy tlldscldrl difeflnhve dglkdhydik mltflmlvrl stlcpsavlq
     1141 rldrlveplr atcttkvkan svkqefekqd elkrsamrav aalltipeae ksplmsefqs
     1201 qissnpelaa ifesiqkdss stslesmdts
//
LOCUS       XP_053926553            1220 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor-interacting protein 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053926553
VERSION     XP_053926553.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070578.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1220
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1220
                     /product="glutamate receptor-interacting protein 1 isoform
                     X1"
                     /calculated_mol_wt=133346
     Region          78..160
                     /region_name="PDZ1_GRIP1-2-like"
                     /note="PDZ domain 1 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06687"
                     /db_xref="CDD:467175"
     Site            order(89..95,107,110,140,144,147..148)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467175"
     Region          175..263
                     /region_name="PDZ2_GRIP1-2-like"
                     /note="PDZ domain 2 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06681"
                     /db_xref="CDD:467169"
     Site            order(187..193,209,212,242,246,249..250)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467169"
     Region          275..360
                     /region_name="PDZ3_GRIP1-2-like"
                     /note="PDZ domain 3 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06684"
                     /db_xref="CDD:467172"
     Site            order(288..294,307,310,340,344,347..348)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467172"
     Region          489..589
                     /region_name="PDZ4_GRIP1-2-like"
                     /note="PDZ domain 4 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06686"
                     /db_xref="CDD:467174"
     Site            order(494..497,538..539,541..543,582,584..589)
                     /site_type="other"
                     /note="PDZ5 interface [polypeptide binding]"
                     /db_xref="CDD:467174"
     Site            order(507..513,529,532,562,566,569..570)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467174"
     Region          597..681
                     /region_name="PDZ5_GRIP1-2-like"
                     /note="PDZ domain 5 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06682"
                     /db_xref="CDD:467170"
     Site            order(608..614,628,631,661,665,668..669)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467170"
     Region          694..778
                     /region_name="PDZ6_GRIP1-2-like"
                     /note="PDZ domain 6 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06683"
                     /db_xref="CDD:467171"
     Site            order(707..713,725,728,758,762,765..766)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467171"
     Region          1089..1173
                     /region_name="PDZ7_GRIP1-2-like"
                     /note="PDZ domain 7 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06685"
                     /db_xref="CDD:467173"
     Site            order(1104..1110,1121,1124,1153,1157,1160..1161)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467173"
     Site            order(1143,1146,1151,1154..1155,1158..1159)
                     /site_type="other"
                     /note="GRASP-1 binding site [polypeptide binding]"
                     /db_xref="CDD:467173"
     CDS             1..1220
                     /gene="GRIP1"
                     /coded_by="XM_054070578.1:411..4073"
                     /db_xref="GeneID:104061529"
ORIGIN      
        1 merflgfvkq irrsrrrkgk kyrpeedyhe gyedvyyyas ehfrnespyt ksanqarppd
       61 galsvrrqsi peefkgstiv elmkkegttl gltvsggidk dgkprvsnlr qggiaarsdq
      121 ldvgdyiksv nginltkfrh deiisllknv gervvlevey elppvsvqgs glifrtvevt
      181 lhkegntfgf virggahddr nksrpvvitc vrpggpadre gtikpgdrll svdgirllgt
      241 thaeamsilk qcgqeatllv eydvsvmdsv atasgpllve vaktpgaalg valttsmccn
      301 kqvividkik sasiadrcga lhvgdhilsi dgtsmeyctl aeatqflana adnvkleilp
      361 hhqtrlalkg pehvkvqrsn rqltwdscan shsslltyrh yntyhpdhcr mpalkfqktp
      421 pekslslvss sfsptsmsay slsslnmgtl prslystspr gtmmrrrmkk kdfksslsla
      481 sstvglagqv vhtettevvl tadpivgfgi qlqgsvfate tlsspplisy iesdspaerc
      541 gvlqigdriv aingipteds tfdeanqllr dssitnkvtl eiefdvaesv ipssgtfhvk
      601 lpkkhnvelg itisspssrk pgdplvisdi kkgsvahrtg tlelgdklla idnirldncs
      661 medavqilqh cedlvklkir kdednsdeqe ssgaiiytve lkryggplgi tisgteepfd
      721 piiissltkg glaertgaih igdrilains sslkgkplse aihllqmage tvtlkikkqt
      781 datspkkfsv pvghvselsd aeeetsaaqq sgklsdiyst tvpsvdsave swdgsgidts
      841 fgnqghsyqa sgynfnayew rspkqtslsp pskprnhpfh dtglsdddwd qpaasstask
      901 tmwqqketea lgenqenhlk qasgerpgge sirsmkkesk mwkgasagqr kgggqleewn
      961 tssftgthdn teadqeenfw sqaledletc gqsgilrele gkadrrlclr nmtllatims
     1021 gstmslnhen pqprtqlgrq asfqerstvr physqatrsn tlpsdvgrks mvlrkikqem
     1081 keimsptpve lhkvtlykds dgedfgfsvs dgllekgvyv knirpagpgd lgglkpydrl
     1141 lqvnhvrtrd fdcclvvpli aesgnklelv isrnplacqk gssepqssag gewsdqnnaf
     1201 fqqsghtnin tetrdptntl
//
LOCUS       XP_053926563            1205 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor-interacting protein 1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053926563
VERSION     XP_053926563.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070588.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1205
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1205
                     /product="glutamate receptor-interacting protein 1 isoform
                     X2"
                     /calculated_mol_wt=131603
     Region          78..160
                     /region_name="PDZ1_GRIP1-2-like"
                     /note="PDZ domain 1 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06687"
                     /db_xref="CDD:467175"
     Site            order(89..95,107,110,140,144,147..148)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467175"
     Region          175..263
                     /region_name="PDZ2_GRIP1-2-like"
                     /note="PDZ domain 2 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06681"
                     /db_xref="CDD:467169"
     Site            order(187..193,209,212,242,246,249..250)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467169"
     Region          275..360
                     /region_name="PDZ3_GRIP1-2-like"
                     /note="PDZ domain 3 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06684"
                     /db_xref="CDD:467172"
     Site            order(288..294,307,310,340,344,347..348)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467172"
     Region          489..589
                     /region_name="PDZ4_GRIP1-2-like"
                     /note="PDZ domain 4 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06686"
                     /db_xref="CDD:467174"
     Site            order(494..497,538..539,541..543,582,584..589)
                     /site_type="other"
                     /note="PDZ5 interface [polypeptide binding]"
                     /db_xref="CDD:467174"
     Site            order(507..513,529,532,562,566,569..570)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467174"
     Region          597..681
                     /region_name="PDZ5_GRIP1-2-like"
                     /note="PDZ domain 5 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06682"
                     /db_xref="CDD:467170"
     Site            order(608..614,628,631,661,665,668..669)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467170"
     Region          694..778
                     /region_name="PDZ6_GRIP1-2-like"
                     /note="PDZ domain 6 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06683"
                     /db_xref="CDD:467171"
     Site            order(707..713,725,728,758,762,765..766)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467171"
     Region          1074..1158
                     /region_name="PDZ7_GRIP1-2-like"
                     /note="PDZ domain 7 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06685"
                     /db_xref="CDD:467173"
     Site            order(1089..1095,1106,1109,1138,1142,1145..1146)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467173"
     Site            order(1128,1131,1136,1139..1140,1143..1144)
                     /site_type="other"
                     /note="GRASP-1 binding site [polypeptide binding]"
                     /db_xref="CDD:467173"
     CDS             1..1205
                     /gene="GRIP1"
                     /coded_by="XM_054070588.1:410..4027"
                     /db_xref="GeneID:104061529"
ORIGIN      
        1 merflgfvkq irrsrrrkgk kyrpeedyhe gyedvyyyas ehfrnespyt ksanqarppd
       61 galsvrrqsi peefkgstiv elmkkegttl gltvsggidk dgkprvsnlr qggiaarsdq
      121 ldvgdyiksv nginltkfrh deiisllknv gervvlevey elppvsvqgs glifrtvevt
      181 lhkegntfgf virggahddr nksrpvvitc vrpggpadre gtikpgdrll svdgirllgt
      241 thaeamsilk qcgqeatllv eydvsvmdsv atasgpllve vaktpgaalg valttsmccn
      301 kqvividkik sasiadrcga lhvgdhilsi dgtsmeyctl aeatqflana adnvkleilp
      361 hhqtrlalkg pehvkvqrsn rqltwdscan shsslltyrh yntyhpdhcr mpalkfqktp
      421 pekslslvss sfsptsmsay slsslnmgtl prslystspr gtmmrrrmkk kdfksslsla
      481 sstvglagqv vhtettevvl tadpivgfgi qlqgsvfate tlsspplisy iesdspaerc
      541 gvlqigdriv aingipteds tfdeanqllr dssitnkvtl eiefdvaesv ipssgtfhvk
      601 lpkkhnvelg itisspssrk pgdplvisdi kkgsvahrtg tlelgdklla idnirldncs
      661 medavqilqh cedlvklkir kdednsdeqe ssgaiiytve lkryggplgi tisgteepfd
      721 piiissltkg glaertgaih igdrilains sslkgkplse aihllqmage tvtlkikkqt
      781 datspkkfsv pvghvselsd aeeetsaaqq sgklsdiyst tvpsvdsave swdgsgidts
      841 fgnqghsyqa sgynfnayew rspkqtslsp pskprnhpfh dtglsdddwd qpaasstask
      901 tmwqqketea lgenqenhlk qasgerpgge sirsmkkesk mwkgasagqr kgggqleewn
      961 tssftgthdn teadqeenfw sqaledletc gqsgilrele atimsgstms lnhenpqprt
     1021 qlgrqasfqe rstvrphysq atrsntlpsd vgrksmvlrk ikqemkeims ptpvelhkvt
     1081 lykdsdgedf gfsvsdglle kgvyvknirp agpgdlgglk pydrllqvnh vrtrdfdccl
     1141 vvpliaesgn klelvisrnp lacqkgssep qssaggewsd qnnaffqqsg htnintetrd
     1201 ptntl
//
LOCUS       XP_053926571            1194 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor-interacting protein 1 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053926571
VERSION     XP_053926571.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070596.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1194
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1194
                     /product="glutamate receptor-interacting protein 1 isoform
                     X3"
                     /calculated_mol_wt=129780
     Region          52..134
                     /region_name="PDZ1_GRIP1-2-like"
                     /note="PDZ domain 1 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06687"
                     /db_xref="CDD:467175"
     Site            order(63..69,81,84,114,118,121..122)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467175"
     Region          149..237
                     /region_name="PDZ2_GRIP1-2-like"
                     /note="PDZ domain 2 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06681"
                     /db_xref="CDD:467169"
     Site            order(161..167,183,186,216,220,223..224)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467169"
     Region          249..334
                     /region_name="PDZ3_GRIP1-2-like"
                     /note="PDZ domain 3 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06684"
                     /db_xref="CDD:467172"
     Site            order(262..268,281,284,314,318,321..322)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467172"
     Region          463..563
                     /region_name="PDZ4_GRIP1-2-like"
                     /note="PDZ domain 4 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06686"
                     /db_xref="CDD:467174"
     Site            order(468..471,512..513,515..517,556,558..563)
                     /site_type="other"
                     /note="PDZ5 interface [polypeptide binding]"
                     /db_xref="CDD:467174"
     Site            order(481..487,503,506,536,540,543..544)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467174"
     Region          571..655
                     /region_name="PDZ5_GRIP1-2-like"
                     /note="PDZ domain 5 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06682"
                     /db_xref="CDD:467170"
     Site            order(582..588,602,605,635,639,642..643)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467170"
     Region          668..752
                     /region_name="PDZ6_GRIP1-2-like"
                     /note="PDZ domain 6 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06683"
                     /db_xref="CDD:467171"
     Site            order(681..687,699,702,732,736,739..740)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467171"
     Region          1063..1147
                     /region_name="PDZ7_GRIP1-2-like"
                     /note="PDZ domain 7 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06685"
                     /db_xref="CDD:467173"
     Site            order(1078..1084,1095,1098,1127,1131,1134..1135)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467173"
     Site            order(1117,1120,1125,1128..1129,1132..1133)
                     /site_type="other"
                     /note="GRASP-1 binding site [polypeptide binding]"
                     /db_xref="CDD:467173"
     CDS             1..1194
                     /gene="GRIP1"
                     /coded_by="XM_054070596.1:123..3707"
                     /db_xref="GeneID:104061529"
ORIGIN      
        1 mpgwkknipi clqaeperde spytksanqa rppdgalsvr rqsipeefkg stivelmkke
       61 gttlgltvsg gidkdgkprv snlrqggiaa rsdqldvgdy iksvnginlt kfrhdeiisl
      121 lknvgervvl eveyelppvs vqgsglifrt vevtlhkegn tfgfvirgga hddrnksrpv
      181 vitcvrpggp adregtikpg drllsvdgir llgtthaeam silkqcgqea tllveydvsv
      241 mdsvatasgp llvevaktpg aalgvaltts mccnkqvivi dkiksasiad rcgalhvgdh
      301 ilsidgtsme yctlaeatqf lanaadnvkl eilphhqtrl alkgpehvkv qrsnrqltwd
      361 scanshssll tyrhyntyhp dhcrmpalkf qktppeksls lvsssfspts msayslssln
      421 mgtlprslys tsprgtmmrr rmkkkdfkss lslasstvgl agqvvhtett evvltadpiv
      481 gfgiqlqgsv fatetlsspp lisyiesdsp aercgvlqig drivaingip tedstfdean
      541 qllrdssitn kvtleiefdv aesvipssgt fhvklpkkhn velgitissp ssrkpgdplv
      601 isdikkgsva hrtgtlelgd kllaidnirl dncsmedavq ilqhcedlvk lkirkdedns
      661 deqessgaii ytvelkrygg plgitisgte epfdpiiiss ltkgglaert gaihigdril
      721 ainssslkgk plseaihllq magetvtlki kkqtdatspk kfsvpvghvs elsdaeeets
      781 aaqqsgklsd iysttvpsvd saveswdgsg idtsfgnqgh syqasgynfn ayewrspkqt
      841 slsppskprn hpfhdtglsd ddwdqpaass tasktmwqqk etealgenqe nhlkqasger
      901 pggesirsmk keskmwkgas agqrkgggql eewntssftg thdnteadqe enfwsqaled
      961 letcgqsgil relegkadrr lclrnmtlla timsgstmsl nhenpqprtq lgrqasfqer
     1021 stvrphysqa trsntlpsdv grksmvlrki kqemkeimsp tpvelhkvtl ykdsdgedfg
     1081 fsvsdgllek gvyvknirpa gpgdlgglkp ydrllqvnhv rtrdfdcclv vpliaesgnk
     1141 lelvisrnpl acqkgssepq ssaggewsdq nnaffqqsgh tnintetrdp tntl
//
LOCUS       XP_053926577            1194 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor-interacting protein 1 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053926577
VERSION     XP_053926577.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070602.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1194
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1194
                     /product="glutamate receptor-interacting protein 1 isoform
                     X4"
                     /calculated_mol_wt=129806
     Region          52..134
                     /region_name="PDZ1_GRIP1-2-like"
                     /note="PDZ domain 1 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06687"
                     /db_xref="CDD:467175"
     Site            order(63..69,81,84,114,118,121..122)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467175"
     Region          149..237
                     /region_name="PDZ2_GRIP1-2-like"
                     /note="PDZ domain 2 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06681"
                     /db_xref="CDD:467169"
     Site            order(161..167,183,186,216,220,223..224)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467169"
     Region          249..334
                     /region_name="PDZ3_GRIP1-2-like"
                     /note="PDZ domain 3 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06684"
                     /db_xref="CDD:467172"
     Site            order(262..268,281,284,314,318,321..322)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467172"
     Region          463..563
                     /region_name="PDZ4_GRIP1-2-like"
                     /note="PDZ domain 4 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06686"
                     /db_xref="CDD:467174"
     Site            order(468..471,512..513,515..517,556,558..563)
                     /site_type="other"
                     /note="PDZ5 interface [polypeptide binding]"
                     /db_xref="CDD:467174"
     Site            order(481..487,503,506,536,540,543..544)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467174"
     Region          571..655
                     /region_name="PDZ5_GRIP1-2-like"
                     /note="PDZ domain 5 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06682"
                     /db_xref="CDD:467170"
     Site            order(582..588,602,605,635,639,642..643)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467170"
     Region          668..752
                     /region_name="PDZ6_GRIP1-2-like"
                     /note="PDZ domain 6 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06683"
                     /db_xref="CDD:467171"
     Site            order(681..687,699,702,732,736,739..740)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467171"
     Region          1063..1147
                     /region_name="PDZ7_GRIP1-2-like"
                     /note="PDZ domain 7 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06685"
                     /db_xref="CDD:467173"
     Site            order(1078..1084,1095,1098,1127,1131,1134..1135)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467173"
     Site            order(1117,1120,1125,1128..1129,1132..1133)
                     /site_type="other"
                     /note="GRASP-1 binding site [polypeptide binding]"
                     /db_xref="CDD:467173"
     CDS             1..1194
                     /gene="GRIP1"
                     /coded_by="XM_054070602.1:86..3670"
                     /db_xref="GeneID:104061529"
ORIGIN      
        1 miavsfkcrc qilrrlakde spytksanqa rppdgalsvr rqsipeefkg stivelmkke
       61 gttlgltvsg gidkdgkprv snlrqggiaa rsdqldvgdy iksvnginlt kfrhdeiisl
      121 lknvgervvl eveyelppvs vqgsglifrt vevtlhkegn tfgfvirgga hddrnksrpv
      181 vitcvrpggp adregtikpg drllsvdgir llgtthaeam silkqcgqea tllveydvsv
      241 mdsvatasgp llvevaktpg aalgvaltts mccnkqvivi dkiksasiad rcgalhvgdh
      301 ilsidgtsme yctlaeatqf lanaadnvkl eilphhqtrl alkgpehvkv qrsnrqltwd
      361 scanshssll tyrhyntyhp dhcrmpalkf qktppeksls lvsssfspts msayslssln
      421 mgtlprslys tsprgtmmrr rmkkkdfkss lslasstvgl agqvvhtett evvltadpiv
      481 gfgiqlqgsv fatetlsspp lisyiesdsp aercgvlqig drivaingip tedstfdean
      541 qllrdssitn kvtleiefdv aesvipssgt fhvklpkkhn velgitissp ssrkpgdplv
      601 isdikkgsva hrtgtlelgd kllaidnirl dncsmedavq ilqhcedlvk lkirkdedns
      661 deqessgaii ytvelkrygg plgitisgte epfdpiiiss ltkgglaert gaihigdril
      721 ainssslkgk plseaihllq magetvtlki kkqtdatspk kfsvpvghvs elsdaeeets
      781 aaqqsgklsd iysttvpsvd saveswdgsg idtsfgnqgh syqasgynfn ayewrspkqt
      841 slsppskprn hpfhdtglsd ddwdqpaass tasktmwqqk etealgenqe nhlkqasger
      901 pggesirsmk keskmwkgas agqrkgggql eewntssftg thdnteadqe enfwsqaled
      961 letcgqsgil relegkadrr lclrnmtlla timsgstmsl nhenpqprtq lgrqasfqer
     1021 stvrphysqa trsntlpsdv grksmvlrki kqemkeimsp tpvelhkvtl ykdsdgedfg
     1081 fsvsdgllek gvyvknirpa gpgdlgglkp ydrllqvnhv rtrdfdcclv vpliaesgnk
     1141 lelvisrnpl acqkgssepq ssaggewsdq nnaffqqsgh tnintetrdp tntl
//
LOCUS       XP_053926584            1193 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor-interacting protein 1 isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053926584
VERSION     XP_053926584.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070609.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1193
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1193
                     /product="glutamate receptor-interacting protein 1 isoform
                     X5"
                     /calculated_mol_wt=130422
     Region          51..133
                     /region_name="PDZ1_GRIP1-2-like"
                     /note="PDZ domain 1 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06687"
                     /db_xref="CDD:467175"
     Site            order(62..68,80,83,113,117,120..121)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467175"
     Region          148..236
                     /region_name="PDZ2_GRIP1-2-like"
                     /note="PDZ domain 2 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06681"
                     /db_xref="CDD:467169"
     Site            order(160..166,182,185,215,219,222..223)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467169"
     Region          248..333
                     /region_name="PDZ3_GRIP1-2-like"
                     /note="PDZ domain 3 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06684"
                     /db_xref="CDD:467172"
     Site            order(261..267,280,283,313,317,320..321)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467172"
     Region          462..562
                     /region_name="PDZ4_GRIP1-2-like"
                     /note="PDZ domain 4 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06686"
                     /db_xref="CDD:467174"
     Site            order(467..470,511..512,514..516,555,557..562)
                     /site_type="other"
                     /note="PDZ5 interface [polypeptide binding]"
                     /db_xref="CDD:467174"
     Site            order(480..486,502,505,535,539,542..543)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467174"
     Region          570..654
                     /region_name="PDZ5_GRIP1-2-like"
                     /note="PDZ domain 5 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06682"
                     /db_xref="CDD:467170"
     Site            order(581..587,601,604,634,638,641..642)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467170"
     Region          667..751
                     /region_name="PDZ6_GRIP1-2-like"
                     /note="PDZ domain 6 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06683"
                     /db_xref="CDD:467171"
     Site            order(680..686,698,701,731,735,738..739)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467171"
     Region          1062..1146
                     /region_name="PDZ7_GRIP1-2-like"
                     /note="PDZ domain 7 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06685"
                     /db_xref="CDD:467173"
     Site            order(1077..1083,1094,1097,1126,1130,1133..1134)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467173"
     Site            order(1116,1119,1124,1127..1128,1131..1132)
                     /site_type="other"
                     /note="GRASP-1 binding site [polypeptide binding]"
                     /db_xref="CDD:467173"
     CDS             1..1193
                     /gene="GRIP1"
                     /coded_by="XM_054070609.1:411..3992"
                     /db_xref="GeneID:104061529"
ORIGIN      
        1 merflgfvkq irrsrrrkgk kyrpeedyhe gyedvyyyas ehfrkefkgs tivelmkkeg
       61 ttlgltvsgg idkdgkprvs nlrqggiaar sdqldvgdyi ksvnginltk frhdeiisll
      121 knvgervvle veyelppvsv qgsglifrtv evtlhkegnt fgfvirggah ddrnksrpvv
      181 itcvrpggpa dregtikpgd rllsvdgirl lgtthaeams ilkqcgqeat llveydvsvm
      241 dsvatasgpl lvevaktpga algvalttsm ccnkqvivid kiksasiadr cgalhvgdhi
      301 lsidgtsmey ctlaeatqfl anaadnvkle ilphhqtrla lkgpehvkvq rsnrqltwds
      361 canshssllt yrhyntyhpd hcrmpalkfq ktppekslsl vsssfsptsm sayslsslnm
      421 gtlprslyst sprgtmmrrr mkkkdfkssl slasstvgla gqvvhtette vvltadpivg
      481 fgiqlqgsvf atetlssppl isyiesdspa ercgvlqigd rivaingipt edstfdeanq
      541 llrdssitnk vtleiefdva esvipssgtf hvklpkkhnv elgitissps srkpgdplvi
      601 sdikkgsvah rtgtlelgdk llaidnirld ncsmedavqi lqhcedlvkl kirkdednsd
      661 eqessgaiiy tvelkryggp lgitisgtee pfdpiiissl tkgglaertg aihigdrila
      721 inssslkgkp lseaihllqm agetvtlkik kqtdatspkk fsvpvghvse lsdaeeetsa
      781 aqqsgklsdi ysttvpsvds aveswdgsgi dtsfgnqghs yqasgynfna yewrspkqts
      841 lsppskprnh pfhdtglsdd dwdqpaasst asktmwqqke tealgenqen hlkqasgerp
      901 ggesirsmkk eskmwkgasa gqrkgggqle ewntssftgt hdnteadqee nfwsqaledl
      961 etcgqsgilr elegkadrrl clrnmtllat imsgstmsln henpqprtql grqasfqers
     1021 tvrphysqat rsntlpsdvg rksmvlrkik qemkeimspt pvelhkvtly kdsdgedfgf
     1081 svsdgllekg vyvknirpag pgdlgglkpy drllqvnhvr trdfdcclvv pliaesgnkl
     1141 elvisrnpla cqkgssepqs saggewsdqn naffqqsght nintetrdpt ntl
//
LOCUS       XP_053926588            1169 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor-interacting protein 1 isoform X6 [Cuculus
            canorus].
ACCESSION   XP_053926588
VERSION     XP_053926588.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070613.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1169
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1169
                     /product="glutamate receptor-interacting protein 1 isoform
                     X6"
                     /calculated_mol_wt=127247
     Region          78..160
                     /region_name="PDZ1_GRIP1-2-like"
                     /note="PDZ domain 1 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06687"
                     /db_xref="CDD:467175"
     Site            order(89..95,107,110,140,144,147..148)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467175"
     Region          175..263
                     /region_name="PDZ2_GRIP1-2-like"
                     /note="PDZ domain 2 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06681"
                     /db_xref="CDD:467169"
     Site            order(187..193,209,212,242,246,249..250)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467169"
     Region          275..360
                     /region_name="PDZ3_GRIP1-2-like"
                     /note="PDZ domain 3 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06684"
                     /db_xref="CDD:467172"
     Site            order(288..294,307,310,340,344,347..348)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467172"
     Region          438..538
                     /region_name="PDZ4_GRIP1-2-like"
                     /note="PDZ domain 4 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06686"
                     /db_xref="CDD:467174"
     Site            order(443..446,487..488,490..492,531,533..538)
                     /site_type="other"
                     /note="PDZ5 interface [polypeptide binding]"
                     /db_xref="CDD:467174"
     Site            order(456..462,478,481,511,515,518..519)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467174"
     Region          546..630
                     /region_name="PDZ5_GRIP1-2-like"
                     /note="PDZ domain 5 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06682"
                     /db_xref="CDD:467170"
     Site            order(557..563,577,580,610,614,617..618)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467170"
     Region          643..727
                     /region_name="PDZ6_GRIP1-2-like"
                     /note="PDZ domain 6 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06683"
                     /db_xref="CDD:467171"
     Site            order(656..662,674,677,707,711,714..715)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467171"
     Region          1038..1122
                     /region_name="PDZ7_GRIP1-2-like"
                     /note="PDZ domain 7 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06685"
                     /db_xref="CDD:467173"
     Site            order(1053..1059,1070,1073,1102,1106,1109..1110)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467173"
     Site            order(1092,1095,1100,1103..1104,1107..1108)
                     /site_type="other"
                     /note="GRASP-1 binding site [polypeptide binding]"
                     /db_xref="CDD:467173"
     CDS             1..1169
                     /gene="GRIP1"
                     /coded_by="XM_054070613.1:410..3919"
                     /db_xref="GeneID:104061529"
ORIGIN      
        1 merflgfvkq irrsrrrkgk kyrpeedyhe gyedvyyyas ehfrnespyt ksanqarppd
       61 galsvrrqsi peefkgstiv elmkkegttl gltvsggidk dgkprvsnlr qggiaarsdq
      121 ldvgdyiksv nginltkfrh deiisllknv gervvlevey elppvsvqgs glifrtvevt
      181 lhkegntfgf virggahddr nksrpvvitc vrpggpadre gtikpgdrll svdgirllgt
      241 thaeamsilk qcgqeatllv eydvsvmdsv atasgpllve vaktpgaalg valttsmccn
      301 kqvividkik sasiadrcga lhvgdhilsi dgtsmeyctl aeatqflana adnvkleilp
      361 hhqtrlalkg pehaalvsss fsptsmsays lsslnmgtlp rslystsprg tmmrrrmkkk
      421 dfksslslas stvglagqvv htettevvlt adpivgfgiq lqgsvfatet lsspplisyi
      481 esdspaercg vlqigdriva ingiptedst fdeanqllrd ssitnkvtle iefdvaesvi
      541 pssgtfhvkl pkkhnvelgi tisspssrkp gdplvisdik kgsvahrtgt lelgdkllai
      601 dnirldncsm edavqilqhc edlvklkirk dednsdeqes sgaiiytvel kryggplgit
      661 isgteepfdp iiissltkgg laertgaihi gdrilainss slkgkplsea ihllqmaget
      721 vtlkikkqtd atspkkfsvp vghvselsda eeetsaaqqs gklsdiystt vpsvdsaves
      781 wdgsgidtsf gnqghsyqas gynfnayewr spkqtslspp skprnhpfhd tglsdddwdq
      841 paasstaskt mwqqketeal genqenhlkq asgerpgges irsmkkeskm wkgasagqrk
      901 gggqleewnt ssftgthdnt eadqeenfws qaledletcg qsgilreleg kadrrlclrn
      961 mtllatimsg stmslnhenp qprtqlgrqa sfqerstvrp hysqatrsnt lpsdvgrksm
     1021 vlrkikqemk eimsptpvel hkvtlykdsd gedfgfsvsd gllekgvyvk nirpagpgdl
     1081 gglkpydrll qvnhvrtrdf dcclvvplia esgnklelvi srnplacqkg ssepqssagg
     1141 ewsdqnnaff qqsghtnint etrdptntl
//
LOCUS       XP_053926598            1168 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor-interacting protein 1 isoform X7 [Cuculus
            canorus].
ACCESSION   XP_053926598
VERSION     XP_053926598.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070623.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1168
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1168
                     /product="glutamate receptor-interacting protein 1 isoform
                     X7"
                     /calculated_mol_wt=127176
     Region          78..160
                     /region_name="PDZ1_GRIP1-2-like"
                     /note="PDZ domain 1 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06687"
                     /db_xref="CDD:467175"
     Site            order(89..95,107,110,140,144,147..148)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467175"
     Region          175..263
                     /region_name="PDZ2_GRIP1-2-like"
                     /note="PDZ domain 2 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06681"
                     /db_xref="CDD:467169"
     Site            order(187..193,209,212,242,246,249..250)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467169"
     Region          275..360
                     /region_name="PDZ3_GRIP1-2-like"
                     /note="PDZ domain 3 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06684"
                     /db_xref="CDD:467172"
     Site            order(288..294,307,310,340,344,347..348)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467172"
     Region          437..537
                     /region_name="PDZ4_GRIP1-2-like"
                     /note="PDZ domain 4 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06686"
                     /db_xref="CDD:467174"
     Site            order(442..445,486..487,489..491,530,532..537)
                     /site_type="other"
                     /note="PDZ5 interface [polypeptide binding]"
                     /db_xref="CDD:467174"
     Site            order(455..461,477,480,510,514,517..518)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467174"
     Region          545..629
                     /region_name="PDZ5_GRIP1-2-like"
                     /note="PDZ domain 5 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06682"
                     /db_xref="CDD:467170"
     Site            order(556..562,576,579,609,613,616..617)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467170"
     Region          642..726
                     /region_name="PDZ6_GRIP1-2-like"
                     /note="PDZ domain 6 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06683"
                     /db_xref="CDD:467171"
     Site            order(655..661,673,676,706,710,713..714)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467171"
     Region          1037..1121
                     /region_name="PDZ7_GRIP1-2-like"
                     /note="PDZ domain 7 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06685"
                     /db_xref="CDD:467173"
     Site            order(1052..1058,1069,1072,1101,1105,1108..1109)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467173"
     Site            order(1091,1094,1099,1102..1103,1106..1107)
                     /site_type="other"
                     /note="GRASP-1 binding site [polypeptide binding]"
                     /db_xref="CDD:467173"
     CDS             1..1168
                     /gene="GRIP1"
                     /coded_by="XM_054070623.1:410..3916"
                     /db_xref="GeneID:104061529"
ORIGIN      
        1 merflgfvkq irrsrrrkgk kyrpeedyhe gyedvyyyas ehfrnespyt ksanqarppd
       61 galsvrrqsi peefkgstiv elmkkegttl gltvsggidk dgkprvsnlr qggiaarsdq
      121 ldvgdyiksv nginltkfrh deiisllknv gervvlevey elppvsvqgs glifrtvevt
      181 lhkegntfgf virggahddr nksrpvvitc vrpggpadre gtikpgdrll svdgirllgt
      241 thaeamsilk qcgqeatllv eydvsvmdsv atasgpllve vaktpgaalg valttsmccn
      301 kqvividkik sasiadrcga lhvgdhilsi dgtsmeyctl aeatqflana adnvkleilp
      361 hhqtrlalkg pehalvsssf sptsmsaysl sslnmgtlpr slystsprgt mmrrrmkkkd
      421 fksslslass tvglagqvvh tettevvlta dpivgfgiql qgsvfatetl sspplisyie
      481 sdspaercgv lqigdrivai ngiptedstf deanqllrds sitnkvtlei efdvaesvip
      541 ssgtfhvklp kkhnvelgit isspssrkpg dplvisdikk gsvahrtgtl elgdkllaid
      601 nirldncsme davqilqhce dlvklkirkd ednsdeqess gaiiytvelk ryggplgiti
      661 sgteepfdpi iissltkggl aertgaihig drilainsss lkgkplseai hllqmagetv
      721 tlkikkqtda tspkkfsvpv ghvselsdae eetsaaqqsg klsdiysttv psvdsavesw
      781 dgsgidtsfg nqghsyqasg ynfnayewrs pkqtslspps kprnhpfhdt glsdddwdqp
      841 aasstasktm wqqketealg enqenhlkqa sgerpggesi rsmkkeskmw kgasagqrkg
      901 ggqleewnts sftgthdnte adqeenfwsq aledletcgq sgilrelegk adrrlclrnm
      961 tllatimsgs tmslnhenpq prtqlgrqas fqerstvrph ysqatrsntl psdvgrksmv
     1021 lrkikqemke imsptpvelh kvtlykdsdg edfgfsvsdg llekgvyvkn irpagpgdlg
     1081 glkpydrllq vnhvrtrdfd cclvvpliae sgnklelvis rnplacqkgs sepqssagge
     1141 wsdqnnaffq qsghtninte trdptntl
//
LOCUS       XP_053926607            1167 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor-interacting protein 1 isoform X8 [Cuculus
            canorus].
ACCESSION   XP_053926607
VERSION     XP_053926607.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070632.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1167
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1167
                     /product="glutamate receptor-interacting protein 1 isoform
                     X8"
                     /calculated_mol_wt=126856
     Region          25..107
                     /region_name="PDZ1_GRIP1-2-like"
                     /note="PDZ domain 1 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06687"
                     /db_xref="CDD:467175"
     Site            order(36..42,54,57,87,91,94..95)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467175"
     Region          122..210
                     /region_name="PDZ2_GRIP1-2-like"
                     /note="PDZ domain 2 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06681"
                     /db_xref="CDD:467169"
     Site            order(134..140,156,159,189,193,196..197)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467169"
     Region          222..307
                     /region_name="PDZ3_GRIP1-2-like"
                     /note="PDZ domain 3 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06684"
                     /db_xref="CDD:467172"
     Site            order(235..241,254,257,287,291,294..295)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467172"
     Region          436..536
                     /region_name="PDZ4_GRIP1-2-like"
                     /note="PDZ domain 4 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06686"
                     /db_xref="CDD:467174"
     Site            order(441..444,485..486,488..490,529,531..536)
                     /site_type="other"
                     /note="PDZ5 interface [polypeptide binding]"
                     /db_xref="CDD:467174"
     Site            order(454..460,476,479,509,513,516..517)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467174"
     Region          544..628
                     /region_name="PDZ5_GRIP1-2-like"
                     /note="PDZ domain 5 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06682"
                     /db_xref="CDD:467170"
     Site            order(555..561,575,578,608,612,615..616)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467170"
     Region          641..725
                     /region_name="PDZ6_GRIP1-2-like"
                     /note="PDZ domain 6 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06683"
                     /db_xref="CDD:467171"
     Site            order(654..660,672,675,705,709,712..713)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467171"
     Region          1036..1120
                     /region_name="PDZ7_GRIP1-2-like"
                     /note="PDZ domain 7 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06685"
                     /db_xref="CDD:467173"
     Site            order(1051..1057,1068,1071,1100,1104,1107..1108)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467173"
     Site            order(1090,1093,1098,1101..1102,1105..1106)
                     /site_type="other"
                     /note="GRASP-1 binding site [polypeptide binding]"
                     /db_xref="CDD:467173"
     CDS             1..1167
                     /gene="GRIP1"
                     /coded_by="XM_054070632.1:123..3626"
                     /db_xref="GeneID:104061529"
ORIGIN      
        1 mpgwkknipi clqaeperee fkgstivelm kkegttlglt vsggidkdgk prvsnlrqgg
       61 iaarsdqldv gdyiksvngi nltkfrhdei isllknvger vvleveyelp pvsvqgsgli
      121 frtvevtlhk egntfgfvir ggahddrnks rpvvitcvrp ggpadregti kpgdrllsvd
      181 girllgttha eamsilkqcg qeatllveyd vsvmdsvata sgpllvevak tpgaalgval
      241 ttsmccnkqv ividkiksas iadrcgalhv gdhilsidgt smeyctlaea tqflanaadn
      301 vkleilphhq trlalkgpeh vkvqrsnrql twdscanshs slltyrhynt yhpdhcrmpa
      361 lkfqktppek slslvsssfs ptsmsaysls slnmgtlprs lystsprgtm mrrrmkkkdf
      421 ksslslasst vglagqvvht ettevvltad pivgfgiqlq gsvfatetls spplisyies
      481 dspaercgvl qigdrivain giptedstfd eanqllrdss itnkvtleie fdvaesvips
      541 sgtfhvklpk khnvelgiti sspssrkpgd plvisdikkg svahrtgtle lgdkllaidn
      601 irldncsmed avqilqhced lvklkirkde dnsdeqessg aiiytvelkr yggplgitis
      661 gteepfdpii issltkggla ertgaihigd rilainsssl kgkplseaih llqmagetvt
      721 lkikkqtdat spkkfsvpvg hvselsdaee etsaaqqsgk lsdiysttvp svdsaveswd
      781 gsgidtsfgn qghsyqasgy nfnayewrsp kqtslsppsk prnhpfhdtg lsdddwdqpa
      841 asstasktmw qqketealge nqenhlkqas gerpggesir smkkeskmwk gasagqrkgg
      901 gqleewntss ftgthdntea dqeenfwsqa ledletcgqs gilrelegka drrlclrnmt
      961 llatimsgst mslnhenpqp rtqlgrqasf qerstvrphy sqatrsntlp sdvgrksmvl
     1021 rkikqemkei msptpvelhk vtlykdsdge dfgfsvsdgl lekgvyvkni rpagpgdlgg
     1081 lkpydrllqv nhvrtrdfdc clvvpliaes gnklelvisr nplacqkgss epqssaggew
     1141 sdqnnaffqq sghtnintet rdptntl
//
LOCUS       XP_053926609            1167 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor-interacting protein 1 isoform X9 [Cuculus
            canorus].
ACCESSION   XP_053926609
VERSION     XP_053926609.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070634.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1167
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1167
                     /product="glutamate receptor-interacting protein 1 isoform
                     X9"
                     /calculated_mol_wt=126883
     Region          25..107
                     /region_name="PDZ1_GRIP1-2-like"
                     /note="PDZ domain 1 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06687"
                     /db_xref="CDD:467175"
     Site            order(36..42,54,57,87,91,94..95)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467175"
     Region          122..210
                     /region_name="PDZ2_GRIP1-2-like"
                     /note="PDZ domain 2 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06681"
                     /db_xref="CDD:467169"
     Site            order(134..140,156,159,189,193,196..197)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467169"
     Region          222..307
                     /region_name="PDZ3_GRIP1-2-like"
                     /note="PDZ domain 3 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06684"
                     /db_xref="CDD:467172"
     Site            order(235..241,254,257,287,291,294..295)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467172"
     Region          436..536
                     /region_name="PDZ4_GRIP1-2-like"
                     /note="PDZ domain 4 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06686"
                     /db_xref="CDD:467174"
     Site            order(441..444,485..486,488..490,529,531..536)
                     /site_type="other"
                     /note="PDZ5 interface [polypeptide binding]"
                     /db_xref="CDD:467174"
     Site            order(454..460,476,479,509,513,516..517)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467174"
     Region          544..628
                     /region_name="PDZ5_GRIP1-2-like"
                     /note="PDZ domain 5 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06682"
                     /db_xref="CDD:467170"
     Site            order(555..561,575,578,608,612,615..616)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467170"
     Region          641..725
                     /region_name="PDZ6_GRIP1-2-like"
                     /note="PDZ domain 6 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06683"
                     /db_xref="CDD:467171"
     Site            order(654..660,672,675,705,709,712..713)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467171"
     Region          1036..1120
                     /region_name="PDZ7_GRIP1-2-like"
                     /note="PDZ domain 7 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06685"
                     /db_xref="CDD:467173"
     Site            order(1051..1057,1068,1071,1100,1104,1107..1108)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467173"
     Site            order(1090,1093,1098,1101..1102,1105..1106)
                     /site_type="other"
                     /note="GRASP-1 binding site [polypeptide binding]"
                     /db_xref="CDD:467173"
     CDS             1..1167
                     /gene="GRIP1"
                     /coded_by="XM_054070634.1:45..3548"
                     /db_xref="GeneID:104061529"
ORIGIN      
        1 miavsfkcrc qilrrlakee fkgstivelm kkegttlglt vsggidkdgk prvsnlrqgg
       61 iaarsdqldv gdyiksvngi nltkfrhdei isllknvger vvleveyelp pvsvqgsgli
      121 frtvevtlhk egntfgfvir ggahddrnks rpvvitcvrp ggpadregti kpgdrllsvd
      181 girllgttha eamsilkqcg qeatllveyd vsvmdsvata sgpllvevak tpgaalgval
      241 ttsmccnkqv ividkiksas iadrcgalhv gdhilsidgt smeyctlaea tqflanaadn
      301 vkleilphhq trlalkgpeh vkvqrsnrql twdscanshs slltyrhynt yhpdhcrmpa
      361 lkfqktppek slslvsssfs ptsmsaysls slnmgtlprs lystsprgtm mrrrmkkkdf
      421 ksslslasst vglagqvvht ettevvltad pivgfgiqlq gsvfatetls spplisyies
      481 dspaercgvl qigdrivain giptedstfd eanqllrdss itnkvtleie fdvaesvips
      541 sgtfhvklpk khnvelgiti sspssrkpgd plvisdikkg svahrtgtle lgdkllaidn
      601 irldncsmed avqilqhced lvklkirkde dnsdeqessg aiiytvelkr yggplgitis
      661 gteepfdpii issltkggla ertgaihigd rilainsssl kgkplseaih llqmagetvt
      721 lkikkqtdat spkkfsvpvg hvselsdaee etsaaqqsgk lsdiysttvp svdsaveswd
      781 gsgidtsfgn qghsyqasgy nfnayewrsp kqtslsppsk prnhpfhdtg lsdddwdqpa
      841 asstasktmw qqketealge nqenhlkqas gerpggesir smkkeskmwk gasagqrkgg
      901 gqleewntss ftgthdntea dqeenfwsqa ledletcgqs gilrelegka drrlclrnmt
      961 llatimsgst mslnhenpqp rtqlgrqasf qerstvrphy sqatrsntlp sdvgrksmvl
     1021 rkikqemkei msptpvelhk vtlykdsdge dfgfsvsdgl lekgvyvkni rpagpgdlgg
     1081 lkpydrllqv nhvrtrdfdc clvvpliaes gnklelvisr nplacqkgss epqssaggew
     1141 sdqnnaffqq sghtnintet rdptntl
//
LOCUS       XP_053926614            1127 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor-interacting protein 1 isoform X10 [Cuculus
            canorus].
ACCESSION   XP_053926614
VERSION     XP_053926614.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070639.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1127
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1127
                     /product="glutamate receptor-interacting protein 1 isoform
                     X10"
                     /calculated_mol_wt=122772
     Region          78..160
                     /region_name="PDZ1_GRIP1-2-like"
                     /note="PDZ domain 1 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06687"
                     /db_xref="CDD:467175"
     Site            order(89..95,107,110,140,144,147..148)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467175"
     Region          175..263
                     /region_name="PDZ2_GRIP1-2-like"
                     /note="PDZ domain 2 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06681"
                     /db_xref="CDD:467169"
     Site            order(187..193,209,212,242,246,249..250)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467169"
     Region          275..360
                     /region_name="PDZ3_GRIP1-2-like"
                     /note="PDZ domain 3 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06684"
                     /db_xref="CDD:467172"
     Site            order(288..294,307,310,340,344,347..348)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467172"
     Region          489..589
                     /region_name="PDZ4_GRIP1-2-like"
                     /note="PDZ domain 4 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06686"
                     /db_xref="CDD:467174"
     Site            order(494..497,538..539,541..543,582,584..589)
                     /site_type="other"
                     /note="PDZ5 interface [polypeptide binding]"
                     /db_xref="CDD:467174"
     Site            order(507..513,529,532,562,566,569..570)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467174"
     Region          597..681
                     /region_name="PDZ5_GRIP1-2-like"
                     /note="PDZ domain 5 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06682"
                     /db_xref="CDD:467170"
     Site            order(608..614,628,631,661,665,668..669)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467170"
     Region          694..778
                     /region_name="PDZ6_GRIP1-2-like"
                     /note="PDZ domain 6 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06683"
                     /db_xref="CDD:467171"
     Site            order(707..713,725,728,758,762,765..766)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467171"
     Region          1000..1080
                     /region_name="PDZ7_GRIP1-2-like"
                     /note="PDZ domain 7 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06685"
                     /db_xref="CDD:467173"
     Site            order(1011..1017,1028,1031,1060,1064,1067..1068)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467173"
     Site            order(1050,1053,1058,1061..1062,1065..1066)
                     /site_type="other"
                     /note="GRASP-1 binding site [polypeptide binding]"
                     /db_xref="CDD:467173"
     CDS             1..1127
                     /gene="GRIP1"
                     /coded_by="XM_054070639.1:412..3795"
                     /db_xref="GeneID:104061529"
ORIGIN      
        1 merflgfvkq irrsrrrkgk kyrpeedyhe gyedvyyyas ehfrnespyt ksanqarppd
       61 galsvrrqsi peefkgstiv elmkkegttl gltvsggidk dgkprvsnlr qggiaarsdq
      121 ldvgdyiksv nginltkfrh deiisllknv gervvlevey elppvsvqgs glifrtvevt
      181 lhkegntfgf virggahddr nksrpvvitc vrpggpadre gtikpgdrll svdgirllgt
      241 thaeamsilk qcgqeatllv eydvsvmdsv atasgpllve vaktpgaalg valttsmccn
      301 kqvividkik sasiadrcga lhvgdhilsi dgtsmeyctl aeatqflana adnvkleilp
      361 hhqtrlalkg pehvkvqrsn rqltwdscan shsslltyrh yntyhpdhcr mpalkfqktp
      421 pekslslvss sfsptsmsay slsslnmgtl prslystspr gtmmrrrmkk kdfksslsla
      481 sstvglagqv vhtettevvl tadpivgfgi qlqgsvfate tlsspplisy iesdspaerc
      541 gvlqigdriv aingipteds tfdeanqllr dssitnkvtl eiefdvaesv ipssgtfhvk
      601 lpkkhnvelg itisspssrk pgdplvisdi kkgsvahrtg tlelgdklla idnirldncs
      661 medavqilqh cedlvklkir kdednsdeqe ssgaiiytve lkryggplgi tisgteepfd
      721 piiissltkg glaertgaih igdrilains sslkgkplse aihllqmage tvtlkikkqt
      781 datspkkfsv pvghvselsd aeeetsaaqq sgklsdiyst tvpsvdsave swdgsgidts
      841 fgnqghsyqa sgynfnayew rspkqtslsp pskprnhpfh dtglsdddwd qpaasstask
      901 tmwqqketea lgenqenhlk qasgerpgge sirsmkkesk mwkgasagqr kgggqleewn
      961 tssftgthdn teadqeenfw sqaledletc gqsgilrele vtlykdsdge dfgfsvsdgl
     1021 lekgvyvkni rpagpgdlgg lkpydrllqv nhvrtrdfdc clvvpliaes gnklelvisr
     1081 nplacqkgss epqssaggew sdqnnaffqq sghtnintet rdptntl
//
LOCUS       XP_053926621            1117 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor-interacting protein 1 isoform X11 [Cuculus
            canorus].
ACCESSION   XP_053926621
VERSION     XP_053926621.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070646.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1117
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1117
                     /product="glutamate receptor-interacting protein 1 isoform
                     X11"
                     /calculated_mol_wt=121526
     Region          78..160
                     /region_name="PDZ1_GRIP1-2-like"
                     /note="PDZ domain 1 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06687"
                     /db_xref="CDD:467175"
     Site            order(89..95,107,110,140,144,147..148)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467175"
     Region          175..263
                     /region_name="PDZ2_GRIP1-2-like"
                     /note="PDZ domain 2 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06681"
                     /db_xref="CDD:467169"
     Site            order(187..193,209,212,242,246,249..250)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467169"
     Region          275..360
                     /region_name="PDZ3_GRIP1-2-like"
                     /note="PDZ domain 3 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06684"
                     /db_xref="CDD:467172"
     Site            order(288..294,307,310,340,344,347..348)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467172"
     Region          386..486
                     /region_name="PDZ4_GRIP1-2-like"
                     /note="PDZ domain 4 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06686"
                     /db_xref="CDD:467174"
     Site            order(391..394,435..436,438..440,479,481..486)
                     /site_type="other"
                     /note="PDZ5 interface [polypeptide binding]"
                     /db_xref="CDD:467174"
     Site            order(404..410,426,429,459,463,466..467)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467174"
     Region          494..578
                     /region_name="PDZ5_GRIP1-2-like"
                     /note="PDZ domain 5 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06682"
                     /db_xref="CDD:467170"
     Site            order(505..511,525,528,558,562,565..566)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467170"
     Region          591..675
                     /region_name="PDZ6_GRIP1-2-like"
                     /note="PDZ domain 6 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06683"
                     /db_xref="CDD:467171"
     Site            order(604..610,622,625,655,659,662..663)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467171"
     Region          986..1070
                     /region_name="PDZ7_GRIP1-2-like"
                     /note="PDZ domain 7 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06685"
                     /db_xref="CDD:467173"
     Site            order(1001..1007,1018,1021,1050,1054,1057..1058)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467173"
     Site            order(1040,1043,1048,1051..1052,1055..1056)
                     /site_type="other"
                     /note="GRASP-1 binding site [polypeptide binding]"
                     /db_xref="CDD:467173"
     CDS             1..1117
                     /gene="GRIP1"
                     /coded_by="XM_054070646.1:410..3763"
                     /db_xref="GeneID:104061529"
ORIGIN      
        1 merflgfvkq irrsrrrkgk kyrpeedyhe gyedvyyyas ehfrnespyt ksanqarppd
       61 galsvrrqsi peefkgstiv elmkkegttl gltvsggidk dgkprvsnlr qggiaarsdq
      121 ldvgdyiksv nginltkfrh deiisllknv gervvlevey elppvsvqgs glifrtvevt
      181 lhkegntfgf virggahddr nksrpvvitc vrpggpadre gtikpgdrll svdgirllgt
      241 thaeamsilk qcgqeatllv eydvsvmdsv atasgpllve vaktpgaalg valttsmccn
      301 kqvividkik sasiadrcga lhvgdhilsi dgtsmeyctl aeatqflana adnvkleilp
      361 hhqtrlalkg pehvslasst vglagqvvht ettevvltad pivgfgiqlq gsvfatetls
      421 spplisyies dspaercgvl qigdrivain giptedstfd eanqllrdss itnkvtleie
      481 fdvaesvips sgtfhvklpk khnvelgiti sspssrkpgd plvisdikkg svahrtgtle
      541 lgdkllaidn irldncsmed avqilqhced lvklkirkde dnsdeqessg aiiytvelkr
      601 yggplgitis gteepfdpii issltkggla ertgaihigd rilainsssl kgkplseaih
      661 llqmagetvt lkikkqtdat spkkfsvpvg hvselsdaee etsaaqqsgk lsdiysttvp
      721 svdsaveswd gsgidtsfgn qghsyqasgy nfnayewrsp kqtslsppsk prnhpfhdtg
      781 lsdddwdqpa asstasktmw qqketealge nqenhlkqas gerpggesir smkkeskmwk
      841 gasagqrkgg gqleewntss ftgthdntea dqeenfwsqa ledletcgqs gilrelegka
      901 drrlclrnmt llatimsgst mslnhenpqp rtqlgrqasf qerstvrphy sqatrsntlp
      961 sdvgrksmvl rkikqemkei msptpvelhk vtlykdsdge dfgfsvsdgl lekgvyvkni
     1021 rpagpgdlgg lkpydrllqv nhvrtrdfdc clvvpliaes gnklelvisr nplacqkgss
     1081 epqssaggew sdqnnaffqq sghtnintet rdptntl
//
LOCUS       XP_053926629            1154 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor-interacting protein 1 isoform X12 [Cuculus
            canorus].
ACCESSION   XP_053926629
VERSION     XP_053926629.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070654.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1154
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1154
                     /product="glutamate receptor-interacting protein 1 isoform
                     X12"
                     /calculated_mol_wt=125504
     Region          78..160
                     /region_name="PDZ1_GRIP1-2-like"
                     /note="PDZ domain 1 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06687"
                     /db_xref="CDD:467175"
     Site            order(89..95,107,110,140,144,147..148)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467175"
     Region          175..263
                     /region_name="PDZ2_GRIP1-2-like"
                     /note="PDZ domain 2 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06681"
                     /db_xref="CDD:467169"
     Site            order(187..193,209,212,242,246,249..250)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467169"
     Region          275..360
                     /region_name="PDZ3_GRIP1-2-like"
                     /note="PDZ domain 3 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06684"
                     /db_xref="CDD:467172"
     Site            order(288..294,307,310,340,344,347..348)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467172"
     Region          438..538
                     /region_name="PDZ4_GRIP1-2-like"
                     /note="PDZ domain 4 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06686"
                     /db_xref="CDD:467174"
     Site            order(443..446,487..488,490..492,531,533..538)
                     /site_type="other"
                     /note="PDZ5 interface [polypeptide binding]"
                     /db_xref="CDD:467174"
     Site            order(456..462,478,481,511,515,518..519)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467174"
     Region          546..630
                     /region_name="PDZ5_GRIP1-2-like"
                     /note="PDZ domain 5 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06682"
                     /db_xref="CDD:467170"
     Site            order(557..563,577,580,610,614,617..618)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467170"
     Region          643..727
                     /region_name="PDZ6_GRIP1-2-like"
                     /note="PDZ domain 6 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06683"
                     /db_xref="CDD:467171"
     Site            order(656..662,674,677,707,711,714..715)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467171"
     Region          1023..1107
                     /region_name="PDZ7_GRIP1-2-like"
                     /note="PDZ domain 7 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06685"
                     /db_xref="CDD:467173"
     Site            order(1038..1044,1055,1058,1087,1091,1094..1095)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467173"
     Site            order(1077,1080,1085,1088..1089,1092..1093)
                     /site_type="other"
                     /note="GRASP-1 binding site [polypeptide binding]"
                     /db_xref="CDD:467173"
     CDS             1..1154
                     /gene="GRIP1"
                     /coded_by="XM_054070654.1:409..3873"
                     /db_xref="GeneID:104061529"
ORIGIN      
        1 merflgfvkq irrsrrrkgk kyrpeedyhe gyedvyyyas ehfrnespyt ksanqarppd
       61 galsvrrqsi peefkgstiv elmkkegttl gltvsggidk dgkprvsnlr qggiaarsdq
      121 ldvgdyiksv nginltkfrh deiisllknv gervvlevey elppvsvqgs glifrtvevt
      181 lhkegntfgf virggahddr nksrpvvitc vrpggpadre gtikpgdrll svdgirllgt
      241 thaeamsilk qcgqeatllv eydvsvmdsv atasgpllve vaktpgaalg valttsmccn
      301 kqvividkik sasiadrcga lhvgdhilsi dgtsmeyctl aeatqflana adnvkleilp
      361 hhqtrlalkg pehaalvsss fsptsmsays lsslnmgtlp rslystsprg tmmrrrmkkk
      421 dfksslslas stvglagqvv htettevvlt adpivgfgiq lqgsvfatet lsspplisyi
      481 esdspaercg vlqigdriva ingiptedst fdeanqllrd ssitnkvtle iefdvaesvi
      541 pssgtfhvkl pkkhnvelgi tisspssrkp gdplvisdik kgsvahrtgt lelgdkllai
      601 dnirldncsm edavqilqhc edlvklkirk dednsdeqes sgaiiytvel kryggplgit
      661 isgteepfdp iiissltkgg laertgaihi gdrilainss slkgkplsea ihllqmaget
      721 vtlkikkqtd atspkkfsvp vghvselsda eeetsaaqqs gklsdiystt vpsvdsaves
      781 wdgsgidtsf gnqghsyqas gynfnayewr spkqtslspp skprnhpfhd tglsdddwdq
      841 paasstaskt mwqqketeal genqenhlkq asgerpgges irsmkkeskm wkgasagqrk
      901 gggqleewnt ssftgthdnt eadqeenfws qaledletcg qsgilrelea timsgstmsl
      961 nhenpqprtq lgrqasfqer stvrphysqa trsntlpsdv grksmvlrki kqemkeimsp
     1021 tpvelhkvtl ykdsdgedfg fsvsdgllek gvyvknirpa gpgdlgglkp ydrllqvnhv
     1081 rtrdfdcclv vpliaesgnk lelvisrnpl acqkgssepq ssaggewsdq nnaffqqsgh
     1141 tnintetrdp tntl
//
LOCUS       XP_053926634            1153 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor-interacting protein 1 isoform X13 [Cuculus
            canorus].
ACCESSION   XP_053926634
VERSION     XP_053926634.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070659.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1153
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1153
                     /product="glutamate receptor-interacting protein 1 isoform
                     X13"
                     /calculated_mol_wt=125433
     Region          78..160
                     /region_name="PDZ1_GRIP1-2-like"
                     /note="PDZ domain 1 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06687"
                     /db_xref="CDD:467175"
     Site            order(89..95,107,110,140,144,147..148)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467175"
     Region          175..263
                     /region_name="PDZ2_GRIP1-2-like"
                     /note="PDZ domain 2 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06681"
                     /db_xref="CDD:467169"
     Site            order(187..193,209,212,242,246,249..250)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467169"
     Region          275..360
                     /region_name="PDZ3_GRIP1-2-like"
                     /note="PDZ domain 3 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06684"
                     /db_xref="CDD:467172"
     Site            order(288..294,307,310,340,344,347..348)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467172"
     Region          437..537
                     /region_name="PDZ4_GRIP1-2-like"
                     /note="PDZ domain 4 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06686"
                     /db_xref="CDD:467174"
     Site            order(442..445,486..487,489..491,530,532..537)
                     /site_type="other"
                     /note="PDZ5 interface [polypeptide binding]"
                     /db_xref="CDD:467174"
     Site            order(455..461,477,480,510,514,517..518)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467174"
     Region          545..629
                     /region_name="PDZ5_GRIP1-2-like"
                     /note="PDZ domain 5 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06682"
                     /db_xref="CDD:467170"
     Site            order(556..562,576,579,609,613,616..617)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467170"
     Region          642..726
                     /region_name="PDZ6_GRIP1-2-like"
                     /note="PDZ domain 6 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06683"
                     /db_xref="CDD:467171"
     Site            order(655..661,673,676,706,710,713..714)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467171"
     Region          1022..1106
                     /region_name="PDZ7_GRIP1-2-like"
                     /note="PDZ domain 7 of glutamate receptor-interacting
                     protein 1 (GRIP1) and GRIP2, and related domains; cd06685"
                     /db_xref="CDD:467173"
     Site            order(1037..1043,1054,1057,1086,1090,1093..1094)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467173"
     Site            order(1076,1079,1084,1087..1088,1091..1092)
                     /site_type="other"
                     /note="GRASP-1 binding site [polypeptide binding]"
                     /db_xref="CDD:467173"
     CDS             1..1153
                     /gene="GRIP1"
                     /coded_by="XM_054070659.1:409..3870"
                     /db_xref="GeneID:104061529"
ORIGIN      
        1 merflgfvkq irrsrrrkgk kyrpeedyhe gyedvyyyas ehfrnespyt ksanqarppd
       61 galsvrrqsi peefkgstiv elmkkegttl gltvsggidk dgkprvsnlr qggiaarsdq
      121 ldvgdyiksv nginltkfrh deiisllknv gervvlevey elppvsvqgs glifrtvevt
      181 lhkegntfgf virggahddr nksrpvvitc vrpggpadre gtikpgdrll svdgirllgt
      241 thaeamsilk qcgqeatllv eydvsvmdsv atasgpllve vaktpgaalg valttsmccn
      301 kqvividkik sasiadrcga lhvgdhilsi dgtsmeyctl aeatqflana adnvkleilp
      361 hhqtrlalkg pehalvsssf sptsmsaysl sslnmgtlpr slystsprgt mmrrrmkkkd
      421 fksslslass tvglagqvvh tettevvlta dpivgfgiql qgsvfatetl sspplisyie
      481 sdspaercgv lqigdrivai ngiptedstf deanqllrds sitnkvtlei efdvaesvip
      541 ssgtfhvklp kkhnvelgit isspssrkpg dplvisdikk gsvahrtgtl elgdkllaid
      601 nirldncsme davqilqhce dlvklkirkd ednsdeqess gaiiytvelk ryggplgiti
      661 sgteepfdpi iissltkggl aertgaihig drilainsss lkgkplseai hllqmagetv
      721 tlkikkqtda tspkkfsvpv ghvselsdae eetsaaqqsg klsdiysttv psvdsavesw
      781 dgsgidtsfg nqghsyqasg ynfnayewrs pkqtslspps kprnhpfhdt glsdddwdqp
      841 aasstasktm wqqketealg enqenhlkqa sgerpggesi rsmkkeskmw kgasagqrkg
      901 ggqleewnts sftgthdnte adqeenfwsq aledletcgq sgilreleat imsgstmsln
      961 henpqprtql grqasfqers tvrphysqat rsntlpsdvg rksmvlrkik qemkeimspt
     1021 pvelhkvtly kdsdgedfgf svsdgllekg vyvknirpag pgdlgglkpy drllqvnhvr
     1081 trdfdcclvv pliaesgnkl elvisrnpla cqkgssepqs saggewsdqn naffqqsght
     1141 nintetrdpt ntl
//
LOCUS       XP_053926643            1027 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA helicase B isoform X1 [Cuculus canorus].
ACCESSION   XP_053926643
VERSION     XP_053926643.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070668.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1027
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1027
                     /product="DNA helicase B isoform X1"
                     /calculated_mol_wt=117385
     Region          297..912
                     /region_name="RecD"
                     /note="ATPase/5#-3# helicase helicase subunit RecD of the
                     DNA repair enzyme RecBCD (exonuclease V) [Replication,
                     recombination and repair]; COG0507"
                     /db_xref="CDD:440273"
     CDS             1..1027
                     /gene="HELB"
                     /coded_by="XM_054070668.1:40..3123"
                     /db_xref="GeneID:104061539"
ORIGIN      
        1 maaelwgvll pprraagsee dteeeseeep yldeaallda serelaaalp prravviqee
       61 nskkeyevvg rfplvgpwwr vnvkvkkmgs kyfvqgypsy flrtdieenn rqvfslflke
      121 cavpdyfkek ffawlptdsm lsfgnleekl kqfqvshlqt gkkqrdtkdy difyyisksf
      181 agkavlvala fpmlleflpi llprhfccll dmvhwqgkse ennctdgeei yfqdkmltkl
      241 deilknepwk lgfsrmtyre lnlsycestw tafcqcehll wkipdlqkna lilydqlkkq
      301 cremghtyed qdelarfvsk dmsiehawqs leflkdqhvv ikekklvflp hlhksekdia
      361 myvgnlltnp swhldvdark ilssetsrem vdnkvngtqa hemerldnrn cenqfpekev
      421 esasgtqska evdldqviam ekicfnpvti isgkggcgks tivsclfrhl kqvekeveaa
      481 srdfeedlda seewntfddh leseniytkk ilnvlftapt graasllsek tklpaytlhq
      541 viysfrswrh seqvqpwkfs tvtilivdeg slvsvhilsl vlklllehaq lakliilgdt
      601 kqlpsidpgn lladifeglk srgfsvelrt nhraesqliv dnasrisqrk fpefdevlkv
      661 pgwneemkmp spekkfilia lpagggcdgl qtaiktllkk gpglqdakqs qfiafrrqdc
      721 dlinevccqh ysnhairdhk krllfqiddk itctrnaylk dllpvcgfre dpschecesg
      781 elplttrpae dgkrlcngdi ffitgdveid kerlltisst ygstftvryk amkklchikh
      841 awartihtfq gseektvvym vgnpgrqhwq hvytavtrgr crvyviaeem hlrravtnrn
      901 vprktrlqrf lreaiaetsn cpkqaspltk swqsqelatq svcvtqgapd psepltdlvk
      961 qeesaglnae eqmgnlqqsp hkrkqglaen sedamktpst kvqdsplgcs rlknltlgqs
     1021 prklfks
//
LOCUS       XP_053926650             852 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA helicase B isoform X2 [Cuculus canorus].
ACCESSION   XP_053926650
VERSION     XP_053926650.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070675.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..852
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..852
                     /product="DNA helicase B isoform X2"
                     /calculated_mol_wt=96944
     Region          122..737
                     /region_name="RecD"
                     /note="ATPase/5#-3# helicase helicase subunit RecD of the
                     DNA repair enzyme RecBCD (exonuclease V) [Replication,
                     recombination and repair]; COG0507"
                     /db_xref="CDD:440273"
     CDS             1..852
                     /gene="HELB"
                     /coded_by="XM_054070675.1:632..3190"
                     /db_xref="GeneID:104061539"
ORIGIN      
        1 mvhtvagkav lvalafpmll eflpillprh fcclldmvhw qgkseennct dgeeiyfqdk
       61 mltkldeilk nepwklgfsr mtyrelnlsy cestwtafcq cehllwkipd lqknalilyd
      121 qlkkqcremg htyedqdela rfvskdmsie hawqsleflk dqhvvikekk lvflphlhks
      181 ekdiamyvgn lltnpswhld vdarkilsse tsremvdnkv ngtqahemer ldnrncenqf
      241 pekevesasg tqskaevdld qviamekicf npvtiisgkg gcgkstivsc lfrhlkqvek
      301 eveaasrdfe edldaseewn tfddhlesen iytkkilnvl ftaptgraas llsektklpa
      361 ytlhqviysf rswrhseqvq pwkfstvtil ivdegslvsv hilslvlkll lehaqlakli
      421 ilgdtkqlps idpgnlladi feglksrgfs velrtnhrae sqlivdnasr isqrkfpefd
      481 evlkvpgwne emkmpspekk filialpagg gcdglqtaik tllkkgpglq dakqsqfiaf
      541 rrqdcdline vccqhysnha irdhkkrllf qiddkitctr naylkdllpv cgfredpsch
      601 ecesgelplt trpaedgkrl cngdiffitg dveidkerll tisstygstf tvrykamkkl
      661 chikhawart ihtfqgseek tvvymvgnpg rqhwqhvyta vtrgrcrvyv iaeemhlrra
      721 vtnrnvprkt rlqrflreai aetsncpkqa spltkswqsq elatqsvcvt qgapdpsepl
      781 tdlvkqeesa glnaeeqmgn lqqsphkrkq glaensedam ktpstkvqds plgcsrlknl
      841 tlgqsprklf ks
//
LOCUS       XP_053926658             835 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA helicase B isoform X3 [Cuculus canorus].
ACCESSION   XP_053926658
VERSION     XP_053926658.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070683.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..835
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..835
                     /product="DNA helicase B isoform X3"
                     /calculated_mol_wt=95237
     Region          105..720
                     /region_name="RecD"
                     /note="ATPase/5#-3# helicase helicase subunit RecD of the
                     DNA repair enzyme RecBCD (exonuclease V) [Replication,
                     recombination and repair]; COG0507"
                     /db_xref="CDD:440273"
     CDS             1..835
                     /gene="HELB"
                     /coded_by="XM_054070683.1:2144..4651"
                     /db_xref="GeneID:104061539"
ORIGIN      
        1 mlleflpill prhfcclldm vhwqgkseen nctdgeeiyf qdkmltklde ilknepwklg
       61 fsrmtyreln lsycestwta fcqcehllwk ipdlqknali lydqlkkqcr emghtyedqd
      121 elarfvskdm siehawqsle flkdqhvvik ekklvflphl hksekdiamy vgnlltnpsw
      181 hldvdarkil ssetsremvd nkvngtqahe merldnrnce nqfpekeves asgtqskaev
      241 dldqviamek icfnpvtiis gkggcgksti vsclfrhlkq vekeveaasr dfeedldase
      301 ewntfddhle seniytkkil nvlftaptgr aasllsektk lpaytlhqvi ysfrswrhse
      361 qvqpwkfstv tilivdegsl vsvhilslvl klllehaqla kliilgdtkq lpsidpgnll
      421 adifeglksr gfsvelrtnh raesqlivdn asrisqrkfp efdevlkvpg wneemkmpsp
      481 ekkfilialp agggcdglqt aiktllkkgp glqdakqsqf iafrrqdcdl inevccqhys
      541 nhairdhkkr llfqiddkit ctrnaylkdl lpvcgfredp schecesgel plttrpaedg
      601 krlcngdiff itgdveidke rlltisstyg stftvrykam kklchikhaw artihtfqgs
      661 eektvvymvg npgrqhwqhv ytavtrgrcr vyviaeemhl rravtnrnvp rktrlqrflr
      721 eaiaetsncp kqaspltksw qsqelatqsv cvtqgapdps epltdlvkqe esaglnaeeq
      781 mgnlqqsphk rkqglaense damktpstkv qdsplgcsrl knltlgqspr klfks
//
LOCUS       XP_053926665             551 aa            linear   VRT 09-MAR-2023
DEFINITION  RCC1 and BTB domain-containing protein 2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053926665
VERSION     XP_053926665.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070690.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..551
                     /product="RCC1 and BTB domain-containing protein 2 isoform
                     X1"
                     /calculated_mol_wt=60349
     Region          63..336
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          375..490
                     /region_name="BTB_POZ_RCBTB2_CHC1L"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in RCC1 and BTB
                     domain-containing protein 2 (RCBTB2); cd18354"
                     /db_xref="CDD:349663"
     Region          487..551
                     /region_name="BACK_RCBTB2"
                     /note="BACK (BTB and C-terminal Kelch) domain found in
                     RCC1 and BTB domain-containing protein 2 (RCBTB2);
                     cd18529"
                     /db_xref="CDD:350604"
     CDS             1..551
                     /gene="LOC104066154"
                     /coded_by="XM_054070690.1:223..1878"
                     /db_xref="GeneID:104066154"
ORIGIN      
        1 medesplsqg vgvkvleatl lsalkmldvg kwpifslcsp eelklirqac vfgsagnevl
       61 yatendevfv lgmncsgclg tgdmqstiep rrldslcgkk iaclsygsgp hvvlateege
      121 vytwghnays qlgngttnhg fvpcqvstnl vnkkvievac gshhsmvlts dgevytwgyn
      181 nsgqvgsgst anqpiprrvt sclqnkiavn iacgqmcsma vvengevyvw gyngngqlgl
      241 gssgnqptpc riaalqgiri qrvacgyaht lvltdegqiy awgansygql gtgsksnqsy
      301 pttvivdkdr vieiaachsa htsaaktqsg qvymwgqcrg qsvilphlth factddvfac
      361 fatpavmwrl lsvepddhlt vaqslkkefd npetadlkfl vdgkyihvhk vllkircehf
      421 rsilnnddei iemsefsypv yrafleylyt dnirlppeda iglldlatly renrlkklcq
      481 qtikqgicee naiallsaav kyeaqdleef cfrfcinhlt vvtqtqgfae mdhdllknfi
      541 skasrvgafr n
//
LOCUS       XP_053926671             551 aa            linear   VRT 09-MAR-2023
DEFINITION  RCC1 and BTB domain-containing protein 2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053926671
VERSION     XP_053926671.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070696.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..551
                     /product="RCC1 and BTB domain-containing protein 2 isoform
                     X1"
                     /calculated_mol_wt=60349
     Region          63..336
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          375..490
                     /region_name="BTB_POZ_RCBTB2_CHC1L"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in RCC1 and BTB
                     domain-containing protein 2 (RCBTB2); cd18354"
                     /db_xref="CDD:349663"
     Region          487..551
                     /region_name="BACK_RCBTB2"
                     /note="BACK (BTB and C-terminal Kelch) domain found in
                     RCC1 and BTB domain-containing protein 2 (RCBTB2);
                     cd18529"
                     /db_xref="CDD:350604"
     CDS             1..551
                     /gene="LOC104066154"
                     /coded_by="XM_054070696.1:274..1929"
                     /db_xref="GeneID:104066154"
ORIGIN      
        1 medesplsqg vgvkvleatl lsalkmldvg kwpifslcsp eelklirqac vfgsagnevl
       61 yatendevfv lgmncsgclg tgdmqstiep rrldslcgkk iaclsygsgp hvvlateege
      121 vytwghnays qlgngttnhg fvpcqvstnl vnkkvievac gshhsmvlts dgevytwgyn
      181 nsgqvgsgst anqpiprrvt sclqnkiavn iacgqmcsma vvengevyvw gyngngqlgl
      241 gssgnqptpc riaalqgiri qrvacgyaht lvltdegqiy awgansygql gtgsksnqsy
      301 pttvivdkdr vieiaachsa htsaaktqsg qvymwgqcrg qsvilphlth factddvfac
      361 fatpavmwrl lsvepddhlt vaqslkkefd npetadlkfl vdgkyihvhk vllkircehf
      421 rsilnnddei iemsefsypv yrafleylyt dnirlppeda iglldlatly renrlkklcq
      481 qtikqgicee naiallsaav kyeaqdleef cfrfcinhlt vvtqtqgfae mdhdllknfi
      541 skasrvgafr n
//
LOCUS       XP_053926677             551 aa            linear   VRT 09-MAR-2023
DEFINITION  RCC1 and BTB domain-containing protein 2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053926677
VERSION     XP_053926677.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070702.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..551
                     /product="RCC1 and BTB domain-containing protein 2 isoform
                     X1"
                     /calculated_mol_wt=60349
     Region          63..336
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          375..490
                     /region_name="BTB_POZ_RCBTB2_CHC1L"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in RCC1 and BTB
                     domain-containing protein 2 (RCBTB2); cd18354"
                     /db_xref="CDD:349663"
     Region          487..551
                     /region_name="BACK_RCBTB2"
                     /note="BACK (BTB and C-terminal Kelch) domain found in
                     RCC1 and BTB domain-containing protein 2 (RCBTB2);
                     cd18529"
                     /db_xref="CDD:350604"
     CDS             1..551
                     /gene="LOC104066154"
                     /coded_by="XM_054070702.1:107..1762"
                     /db_xref="GeneID:104066154"
ORIGIN      
        1 medesplsqg vgvkvleatl lsalkmldvg kwpifslcsp eelklirqac vfgsagnevl
       61 yatendevfv lgmncsgclg tgdmqstiep rrldslcgkk iaclsygsgp hvvlateege
      121 vytwghnays qlgngttnhg fvpcqvstnl vnkkvievac gshhsmvlts dgevytwgyn
      181 nsgqvgsgst anqpiprrvt sclqnkiavn iacgqmcsma vvengevyvw gyngngqlgl
      241 gssgnqptpc riaalqgiri qrvacgyaht lvltdegqiy awgansygql gtgsksnqsy
      301 pttvivdkdr vieiaachsa htsaaktqsg qvymwgqcrg qsvilphlth factddvfac
      361 fatpavmwrl lsvepddhlt vaqslkkefd npetadlkfl vdgkyihvhk vllkircehf
      421 rsilnnddei iemsefsypv yrafleylyt dnirlppeda iglldlatly renrlkklcq
      481 qtikqgicee naiallsaav kyeaqdleef cfrfcinhlt vvtqtqgfae mdhdllknfi
      541 skasrvgafr n
//
LOCUS       XP_053926683             551 aa            linear   VRT 09-MAR-2023
DEFINITION  RCC1 and BTB domain-containing protein 2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053926683
VERSION     XP_053926683.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070708.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..551
                     /product="RCC1 and BTB domain-containing protein 2 isoform
                     X1"
                     /calculated_mol_wt=60349
     Region          63..336
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          375..490
                     /region_name="BTB_POZ_RCBTB2_CHC1L"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in RCC1 and BTB
                     domain-containing protein 2 (RCBTB2); cd18354"
                     /db_xref="CDD:349663"
     Region          487..551
                     /region_name="BACK_RCBTB2"
                     /note="BACK (BTB and C-terminal Kelch) domain found in
                     RCC1 and BTB domain-containing protein 2 (RCBTB2);
                     cd18529"
                     /db_xref="CDD:350604"
     CDS             1..551
                     /gene="LOC104066154"
                     /coded_by="XM_054070708.1:156..1811"
                     /db_xref="GeneID:104066154"
ORIGIN      
        1 medesplsqg vgvkvleatl lsalkmldvg kwpifslcsp eelklirqac vfgsagnevl
       61 yatendevfv lgmncsgclg tgdmqstiep rrldslcgkk iaclsygsgp hvvlateege
      121 vytwghnays qlgngttnhg fvpcqvstnl vnkkvievac gshhsmvlts dgevytwgyn
      181 nsgqvgsgst anqpiprrvt sclqnkiavn iacgqmcsma vvengevyvw gyngngqlgl
      241 gssgnqptpc riaalqgiri qrvacgyaht lvltdegqiy awgansygql gtgsksnqsy
      301 pttvivdkdr vieiaachsa htsaaktqsg qvymwgqcrg qsvilphlth factddvfac
      361 fatpavmwrl lsvepddhlt vaqslkkefd npetadlkfl vdgkyihvhk vllkircehf
      421 rsilnnddei iemsefsypv yrafleylyt dnirlppeda iglldlatly renrlkklcq
      481 qtikqgicee naiallsaav kyeaqdleef cfrfcinhlt vvtqtqgfae mdhdllknfi
      541 skasrvgafr n
//
LOCUS       XP_053926690             551 aa            linear   VRT 09-MAR-2023
DEFINITION  RCC1 and BTB domain-containing protein 2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053926690
VERSION     XP_053926690.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070715.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..551
                     /product="RCC1 and BTB domain-containing protein 2 isoform
                     X1"
                     /calculated_mol_wt=60349
     Region          63..336
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          375..490
                     /region_name="BTB_POZ_RCBTB2_CHC1L"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in RCC1 and BTB
                     domain-containing protein 2 (RCBTB2); cd18354"
                     /db_xref="CDD:349663"
     Region          487..551
                     /region_name="BACK_RCBTB2"
                     /note="BACK (BTB and C-terminal Kelch) domain found in
                     RCC1 and BTB domain-containing protein 2 (RCBTB2);
                     cd18529"
                     /db_xref="CDD:350604"
     CDS             1..551
                     /gene="LOC104066154"
                     /coded_by="XM_054070715.1:139..1794"
                     /db_xref="GeneID:104066154"
ORIGIN      
        1 medesplsqg vgvkvleatl lsalkmldvg kwpifslcsp eelklirqac vfgsagnevl
       61 yatendevfv lgmncsgclg tgdmqstiep rrldslcgkk iaclsygsgp hvvlateege
      121 vytwghnays qlgngttnhg fvpcqvstnl vnkkvievac gshhsmvlts dgevytwgyn
      181 nsgqvgsgst anqpiprrvt sclqnkiavn iacgqmcsma vvengevyvw gyngngqlgl
      241 gssgnqptpc riaalqgiri qrvacgyaht lvltdegqiy awgansygql gtgsksnqsy
      301 pttvivdkdr vieiaachsa htsaaktqsg qvymwgqcrg qsvilphlth factddvfac
      361 fatpavmwrl lsvepddhlt vaqslkkefd npetadlkfl vdgkyihvhk vllkircehf
      421 rsilnnddei iemsefsypv yrafleylyt dnirlppeda iglldlatly renrlkklcq
      481 qtikqgicee naiallsaav kyeaqdleef cfrfcinhlt vvtqtqgfae mdhdllknfi
      541 skasrvgafr n
//
LOCUS       XP_053926697             526 aa            linear   VRT 09-MAR-2023
DEFINITION  RCC1 and BTB domain-containing protein 2 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053926697
VERSION     XP_053926697.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070722.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..526
                     /product="RCC1 and BTB domain-containing protein 2 isoform
                     X2"
                     /calculated_mol_wt=57752
     Region          38..311
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          350..465
                     /region_name="BTB_POZ_RCBTB2_CHC1L"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in RCC1 and BTB
                     domain-containing protein 2 (RCBTB2); cd18354"
                     /db_xref="CDD:349663"
     Region          462..526
                     /region_name="BACK_RCBTB2"
                     /note="BACK (BTB and C-terminal Kelch) domain found in
                     RCC1 and BTB domain-containing protein 2 (RCBTB2);
                     cd18529"
                     /db_xref="CDD:350604"
     CDS             1..526
                     /gene="LOC104066154"
                     /coded_by="XM_054070722.1:188..1768"
                     /db_xref="GeneID:104066154"
ORIGIN      
        1 mldvgkwpif slcspeelkl irqacvfgsa gnevlyaten devfvlgmnc sgclgtgdmq
       61 stieprrlds lcgkkiacls ygsgphvvla teegevytwg hnaysqlgng ttnhgfvpcq
      121 vstnlvnkkv ievacgshhs mvltsdgevy twgynnsgqv gsgstanqpi prrvtsclqn
      181 kiavniacgq mcsmavveng evyvwgyngn gqlglgssgn qptpcriaal qgiriqrvac
      241 gyahtlvltd egqiyawgan sygqlgtgsk snqsypttvi vdkdrvieia achsahtsaa
      301 ktqsgqvymw gqcrgqsvil phlthfactd dvfacfatpa vmwrllsvep ddhltvaqsl
      361 kkefdnpeta dlkflvdgky ihvhkvllki rcehfrsiln nddeiiemse fsypvyrafl
      421 eylytdnirl ppedaiglld latlyrenrl kklcqqtikq giceenaial lsaavkyeaq
      481 dleefcfrfc inhltvvtqt qgfaemdhdl lknfiskasr vgafrn
//
LOCUS       XP_053926705             514 aa            linear   VRT 09-MAR-2023
DEFINITION  RCC1 and BTB domain-containing protein 2 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053926705
VERSION     XP_053926705.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070730.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..514
                     /product="RCC1 and BTB domain-containing protein 2 isoform
                     X3"
                     /calculated_mol_wt=56034
     Region          63..336
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          375..490
                     /region_name="BTB_POZ_RCBTB2_CHC1L"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in RCC1 and BTB
                     domain-containing protein 2 (RCBTB2); cd18354"
                     /db_xref="CDD:349663"
     Region          487..>510
                     /region_name="BACK"
                     /note="BACK (BTB and C-terminal Kelch) domain; cl28903"
                     /db_xref="CDD:475122"
     CDS             1..514
                     /gene="LOC104066154"
                     /coded_by="XM_054070730.1:223..1767"
                     /db_xref="GeneID:104066154"
ORIGIN      
        1 medesplsqg vgvkvleatl lsalkmldvg kwpifslcsp eelklirqac vfgsagnevl
       61 yatendevfv lgmncsgclg tgdmqstiep rrldslcgkk iaclsygsgp hvvlateege
      121 vytwghnays qlgngttnhg fvpcqvstnl vnkkvievac gshhsmvlts dgevytwgyn
      181 nsgqvgsgst anqpiprrvt sclqnkiavn iacgqmcsma vvengevyvw gyngngqlgl
      241 gssgnqptpc riaalqgiri qrvacgyaht lvltdegqiy awgansygql gtgsksnqsy
      301 pttvivdkdr vieiaachsa htsaaktqsg qvymwgqcrg qsvilphlth factddvfac
      361 fatpavmwrl lsvepddhlt vaqslkkefd npetadlkfl vdgkyihvhk vllkircehf
      421 rsilnnddei iemsefsypv yrafleylyt dnirlppeda iglldlatly renrlkklcq
      481 qtikqgicee naiallsaav kyeaqalqkw ttts
//
LOCUS       XP_053926713             468 aa            linear   VRT 09-MAR-2023
DEFINITION  RCC1 and BTB domain-containing protein 2 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053926713
VERSION     XP_053926713.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070738.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..468
                     /product="RCC1 and BTB domain-containing protein 2 isoform
                     X4"
                     /calculated_mol_wt=51368
     Region          63..290
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          292..407
                     /region_name="BTB_POZ_RCBTB2_CHC1L"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in RCC1 and BTB
                     domain-containing protein 2 (RCBTB2); cd18354"
                     /db_xref="CDD:349663"
     Region          404..468
                     /region_name="BACK_RCBTB2"
                     /note="BACK (BTB and C-terminal Kelch) domain found in
                     RCC1 and BTB domain-containing protein 2 (RCBTB2);
                     cd18529"
                     /db_xref="CDD:350604"
     CDS             1..468
                     /gene="LOC104066154"
                     /coded_by="XM_054070738.1:223..1629"
                     /db_xref="GeneID:104066154"
ORIGIN      
        1 medesplsqg vgvkvleatl lsalkmldvg kwpifslcsp eelklirqac vfgsagnevl
       61 yatendevfv lgmncsgclg tgdmqstiep rrldslcgkk iaclsygsgp hvvlateege
      121 vytwghnays qlgngttnhg fvpcqvstnl vnkkvievac gshhsmvlts dgevytwgyn
      181 nsgqvgsgst anqpiprrvt sclqnkiavn iacgqmcsma vvengevyvw gyngngqlgl
      241 gssgnqptpc riaalqgiri qrvacgyaht lvltdegqiy awgansygql epddhltvaq
      301 slkkefdnpe tadlkflvdg kyihvhkvll kircehfrsi lnnddeiiem sefsypvyra
      361 fleylytdni rlppedaigl ldlatlyren rlkklcqqti kqgiceenai allsaavkye
      421 aqdleefcfr fcinhltvvt qtqgfaemdh dllknfiska srvgafrn
//
LOCUS       XP_053926722             526 aa            linear   VRT 09-MAR-2023
DEFINITION  RCC1 and BTB domain-containing protein 2 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053926722
VERSION     XP_053926722.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070747.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..526
                     /product="RCC1 and BTB domain-containing protein 2 isoform
                     X2"
                     /calculated_mol_wt=57752
     Region          38..311
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          350..465
                     /region_name="BTB_POZ_RCBTB2_CHC1L"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in RCC1 and BTB
                     domain-containing protein 2 (RCBTB2); cd18354"
                     /db_xref="CDD:349663"
     Region          462..526
                     /region_name="BACK_RCBTB2"
                     /note="BACK (BTB and C-terminal Kelch) domain found in
                     RCC1 and BTB domain-containing protein 2 (RCBTB2);
                     cd18529"
                     /db_xref="CDD:350604"
     CDS             1..526
                     /gene="LOC104066154"
                     /coded_by="XM_054070747.1:166..1746"
                     /db_xref="GeneID:104066154"
ORIGIN      
        1 mldvgkwpif slcspeelkl irqacvfgsa gnevlyaten devfvlgmnc sgclgtgdmq
       61 stieprrlds lcgkkiacls ygsgphvvla teegevytwg hnaysqlgng ttnhgfvpcq
      121 vstnlvnkkv ievacgshhs mvltsdgevy twgynnsgqv gsgstanqpi prrvtsclqn
      181 kiavniacgq mcsmavveng evyvwgyngn gqlglgssgn qptpcriaal qgiriqrvac
      241 gyahtlvltd egqiyawgan sygqlgtgsk snqsypttvi vdkdrvieia achsahtsaa
      301 ktqsgqvymw gqcrgqsvil phlthfactd dvfacfatpa vmwrllsvep ddhltvaqsl
      361 kkefdnpeta dlkflvdgky ihvhkvllki rcehfrsiln nddeiiemse fsypvyrafl
      421 eylytdnirl ppedaiglld latlyrenrl kklcqqtikq giceenaial lsaavkyeaq
      481 dleefcfrfc inhltvvtqt qgfaemdhdl lknfiskasr vgafrn
//
LOCUS       XP_009568307             626 aa            linear   VRT 09-MAR-2023
DEFINITION  tubulin--tyrosine ligase-like protein 12 [Cuculus canorus].
ACCESSION   XP_009568307
VERSION     XP_009568307.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009570012.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..626
                     /product="tubulin--tyrosine ligase-like protein 12"
                     /calculated_mol_wt=72605
     Region          328..617
                     /region_name="TTL"
                     /note="Tubulin-tyrosine ligase family; pfam03133"
                     /db_xref="CDD:397308"
     CDS             1..626
                     /gene="TTLL12"
                     /coded_by="XM_009570012.2:42..1922"
                     /db_xref="GeneID:104067296"
ORIGIN      
        1 msgegdgvfs afvalhgaal rasgvperyw eslcrklrge vfdagdyfgi mqveevdeee
       61 eggeemeeel kkpnpgnepc fkvivtneng lrasnpnsif lidhawtyrv eharqqllhv
      121 pgllhrmtnl mgidfhgeip degsieqvlr emwkynqtyk lsqgtaeekv pvwyimdefg
      181 sriqhsdqps fataplfymp qqiaytvlwp lrdletgdev trdyaygetd rlvrkcvllp
      241 wvpnevldvn cftpepsdeh yeallaenke klpiainpqv ydkdkvfkvf tdiqqvlnnv
      301 thprfvftdn ekeadilynf shfkdyrkls eerpevmlnq fpcenlltvk dclasisrra
      361 ggpdgpkwlp rtfnlqtelp qfisyfqqrd rrgednhwic kpwnlarsld thitnslnni
      421 irhresspkv vckyienpvl fhredvgmvk fdiryvvllr svkplklfvy dvfwlrfsnr
      481 afslddlddy ekhftvmnya pgvtlkqvhc eefiplfekq ypeypwatvq gnifkafael
      541 fqvasakpap lgicdypssr aiyaidlmlk wdtsrdgkri mqpqilevnf npdcdracky
      601 hptffndvfs tlfldetnsc hvtciv
//
LOCUS       XP_053926746             423 aa            linear   VRT 09-MAR-2023
DEFINITION  polyglutamylase complex subunit TTLL1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053926746
VERSION     XP_053926746.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070771.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..423
                     /product="polyglutamylase complex subunit TTLL1 isoform
                     X1"
                     /calculated_mol_wt=48877
     Region          59..364
                     /region_name="TTL"
                     /note="Tubulin-tyrosine ligase family; pfam03133"
                     /db_xref="CDD:397308"
     CDS             1..423
                     /gene="TTLL1"
                     /coded_by="XM_054070771.1:107..1378"
                     /db_xref="GeneID:104067265"
ORIGIN      
        1 magkvkwvtd ieksvlinnf ekrgwiqvte nedwnfywms vqtirnvfsv etgyrlsddq
       61 ivnhfpnhye ltrkdlmvkn ikryrkelek egsplaekde ngkyiyldfv pvtfmlpady
      121 nlfveefrkn psstwimkpc gkaqgkgifl inklsqikkw srdsktssfv sqsskeayvi
      181 slyinnplli ggkkfdlrly vlvstyrplr cymyklgfcr fctvkytpst seldnmfvhl
      241 tnvaiqkhgd dynhihggkw tvsnlrlyle strgkevtnk lfdeihwiiv qslkavapvm
      301 nndkhcfecy gydiiiddkl kpwlievnas psltsstand rilkynlind tlniavpnge
      361 ipdckwnksp pkevlgnyev lydeemaqnd gsdrdlrnrs gqstgvkgir ardsgkpalt
      421 twk
//
LOCUS       XP_009568275             423 aa            linear   VRT 09-MAR-2023
DEFINITION  polyglutamylase complex subunit TTLL1 isoform X1 [Cuculus canorus].
ACCESSION   XP_009568275
VERSION     XP_009568275.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009569980.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009568275.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..423
                     /product="polyglutamylase complex subunit TTLL1 isoform
                     X1"
                     /calculated_mol_wt=48877
     Region          59..364
                     /region_name="TTL"
                     /note="Tubulin-tyrosine ligase family; pfam03133"
                     /db_xref="CDD:397308"
     CDS             1..423
                     /gene="TTLL1"
                     /coded_by="XM_009569980.2:107..1378"
                     /db_xref="GeneID:104067265"
ORIGIN      
        1 magkvkwvtd ieksvlinnf ekrgwiqvte nedwnfywms vqtirnvfsv etgyrlsddq
       61 ivnhfpnhye ltrkdlmvkn ikryrkelek egsplaekde ngkyiyldfv pvtfmlpady
      121 nlfveefrkn psstwimkpc gkaqgkgifl inklsqikkw srdsktssfv sqsskeayvi
      181 slyinnplli ggkkfdlrly vlvstyrplr cymyklgfcr fctvkytpst seldnmfvhl
      241 tnvaiqkhgd dynhihggkw tvsnlrlyle strgkevtnk lfdeihwiiv qslkavapvm
      301 nndkhcfecy gydiiiddkl kpwlievnas psltsstand rilkynlind tlniavpnge
      361 ipdckwnksp pkevlgnyev lydeemaqnd gsdrdlrnrs gqstgvkgir ardsgkpalt
      421 twk
//
LOCUS       XP_053926757             385 aa            linear   VRT 09-MAR-2023
DEFINITION  polyglutamylase complex subunit TTLL1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053926757
VERSION     XP_053926757.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070782.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..385
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..385
                     /product="polyglutamylase complex subunit TTLL1 isoform
                     X2"
                     /calculated_mol_wt=44220
     Region          21..326
                     /region_name="TTL"
                     /note="Tubulin-tyrosine ligase family; pfam03133"
                     /db_xref="CDD:397308"
     CDS             1..385
                     /gene="TTLL1"
                     /coded_by="XM_054070782.1:247..1404"
                     /db_xref="GeneID:104067265"
ORIGIN      
        1 msvqtirnvf svetgyrlsd dqivnhfpnh yeltrkdlmv knikryrkel ekegsplaek
       61 dengkyiyld fvpvtfmlpa dynlfveefr knpsstwimk pcgkaqgkgi flinklsqik
      121 kwsrdsktss fvsqsskeay vislyinnpl liggkkfdlr lyvlvstyrp lrcymyklgf
      181 crfctvkytp stseldnmfv hltnvaiqkh gddynhihgg kwtvsnlrly lestrgkevt
      241 nklfdeihwi ivqslkavap vmnndkhcfe cygydiiidd klkpwlievn aspsltssta
      301 ndrilkynli ndtlniavpn geipdckwnk sppkevlgny evlydeemaq ndgsdrdlrn
      361 rsgqstgvkg irardsgkpa lttwk
//
LOCUS       XP_053926758             374 aa            linear   VRT 09-MAR-2023
DEFINITION  malonyl-CoA-acyl carrier protein transacylase, mitochondrial
            [Cuculus canorus].
ACCESSION   XP_053926758
VERSION     XP_053926758.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070783.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..374
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..374
                     /product="malonyl-CoA-acyl carrier protein transacylase,
                     mitochondrial"
                     /calculated_mol_wt=40904
     Region          56..355
                     /region_name="Acyl_transf_1"
                     /note="Acyl transferase domain; cl08282"
                     /db_xref="CDD:471802"
     CDS             1..374
                     /gene="MCAT"
                     /coded_by="XM_054070783.1:1..1125"
                     /db_xref="GeneID:104067408"
ORIGIN      
        1 mgaravawrl ggsagggger gaalsallqs svrgeeagee avratrrppr egsvllfpgq
       61 gsqfvgmgrg llrypgvrdm yrvaeavlgy dllglclrgp reeldrtrhc qpavfvasla
      121 aveklnrlqp kvvescvaaa gfsvgefaal vfagalgfpe alyavkvrae amqkaseavp
      181 sgmlsvigrr eanykfacle arrhcellgi enpvcevsny lfpdsrviag hlealkflqe
      241 narkyyfaht kmlpvsgafh trlmesavep laevlksiei qkpllcvysn vdgkkymhsk
      301 hikkllvkqv vspvmweqtm hsvyerkqgt efpytyevgp gkqlgtilks cnlkawkqyt
      361 hvdaleddee aaet
//
LOCUS       XP_053926759             244 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128852641 isoform X1 [Cuculus canorus].
ACCESSION   XP_053926759
VERSION     XP_053926759.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070784.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..244
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..244
                     /product="uncharacterized protein LOC128852641 isoform X1"
                     /calculated_mol_wt=26701
     Region          <130..233
                     /region_name="bcl-2I13"
                     /note="Bcl2-interacting killer, BH3-domain containing;
                     pfam12201"
                     /db_xref="CDD:432396"
     CDS             1..244
                     /gene="LOC128852641"
                     /coded_by="XM_054070784.1:4569..5303"
                     /db_xref="GeneID:128852641"
ORIGIN      
        1 mlshpttvpa slppvvaavp rrsrpskrai papppppear laalpcgaag spcgavrpgg
       61 alrradnrgs ceraalkrpc itrshgivfh dslqnkmsqt rripghfvls sypngapeee
      121 tysnlqtipd tteqmefnis satqvghqla ligdefnrmy hrkledtllh largaaisvf
      181 qtwnifksvi rsfgkilnnn wtkriigcgs wicklpfrcv cqklvpaall avafwwamny
      241 glqn
//
LOCUS       XP_053926769             244 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128852641 isoform X1 [Cuculus canorus].
ACCESSION   XP_053926769
VERSION     XP_053926769.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070794.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..244
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..244
                     /product="uncharacterized protein LOC128852641 isoform X1"
                     /calculated_mol_wt=26701
     Region          <130..233
                     /region_name="bcl-2I13"
                     /note="Bcl2-interacting killer, BH3-domain containing;
                     pfam12201"
                     /db_xref="CDD:432396"
     CDS             1..244
                     /gene="LOC128852641"
                     /coded_by="XM_054070794.1:4465..5199"
                     /db_xref="GeneID:128852641"
ORIGIN      
        1 mlshpttvpa slppvvaavp rrsrpskrai papppppear laalpcgaag spcgavrpgg
       61 alrradnrgs ceraalkrpc itrshgivfh dslqnkmsqt rripghfvls sypngapeee
      121 tysnlqtipd tteqmefnis satqvghqla ligdefnrmy hrkledtllh largaaisvf
      181 qtwnifksvi rsfgkilnnn wtkriigcgs wicklpfrcv cqklvpaall avafwwamny
      241 glqn
//
LOCUS       XP_053926774             244 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128852641 isoform X1 [Cuculus canorus].
ACCESSION   XP_053926774
VERSION     XP_053926774.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070799.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..244
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..244
                     /product="uncharacterized protein LOC128852641 isoform X1"
                     /calculated_mol_wt=26701
     Region          <130..233
                     /region_name="bcl-2I13"
                     /note="Bcl2-interacting killer, BH3-domain containing;
                     pfam12201"
                     /db_xref="CDD:432396"
     CDS             1..244
                     /gene="LOC128852641"
                     /coded_by="XM_054070799.1:4536..5270"
                     /db_xref="GeneID:128852641"
ORIGIN      
        1 mlshpttvpa slppvvaavp rrsrpskrai papppppear laalpcgaag spcgavrpgg
       61 alrradnrgs ceraalkrpc itrshgivfh dslqnkmsqt rripghfvls sypngapeee
      121 tysnlqtipd tteqmefnis satqvghqla ligdefnrmy hrkledtllh largaaisvf
      181 qtwnifksvi rsfgkilnnn wtkriigcgs wicklpfrcv cqklvpaall avafwwamny
      241 glqn
//
LOCUS       XP_053926779             244 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128852641 isoform X1 [Cuculus canorus].
ACCESSION   XP_053926779
VERSION     XP_053926779.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070804.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..244
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..244
                     /product="uncharacterized protein LOC128852641 isoform X1"
                     /calculated_mol_wt=26701
     Region          <130..233
                     /region_name="bcl-2I13"
                     /note="Bcl2-interacting killer, BH3-domain containing;
                     pfam12201"
                     /db_xref="CDD:432396"
     CDS             1..244
                     /gene="LOC128852641"
                     /coded_by="XM_054070804.1:4487..5221"
                     /db_xref="GeneID:128852641"
ORIGIN      
        1 mlshpttvpa slppvvaavp rrsrpskrai papppppear laalpcgaag spcgavrpgg
       61 alrradnrgs ceraalkrpc itrshgivfh dslqnkmsqt rripghfvls sypngapeee
      121 tysnlqtipd tteqmefnis satqvghqla ligdefnrmy hrkledtllh largaaisvf
      181 qtwnifksvi rsfgkilnnn wtkriigcgs wicklpfrcv cqklvpaall avafwwamny
      241 glqn
//
LOCUS       XP_053926786             225 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128852641 isoform X2 [Cuculus canorus].
ACCESSION   XP_053926786
VERSION     XP_053926786.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070811.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..225
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..225
                     /product="uncharacterized protein LOC128852641 isoform X2"
                     /calculated_mol_wt=24511
     Region          <111..214
                     /region_name="bcl-2I13"
                     /note="Bcl2-interacting killer, BH3-domain containing;
                     pfam12201"
                     /db_xref="CDD:432396"
     CDS             1..225
                     /gene="LOC128852641"
                     /coded_by="XM_054070811.1:4568..5245"
                     /db_xref="GeneID:128852641"
ORIGIN      
        1 mlshpttvpa slppvvaavp rrsrpskrai papppppear laalpcgaag spcgavrpgg
       61 alrradnrgs ceraankmsq trripghfvl ssypngapee etysnlqtip dtteqmefni
      121 ssatqvghql aligdefnrm yhrkledtll hlargaaisv fqtwnifksv irsfgkilnn
      181 nwtkriigcg swicklpfrc vcqklvpaal lavafwwamn yglqn
//
LOCUS       XP_053926797             167 aa            linear   VRT 09-MAR-2023
DEFINITION  translocator protein [Cuculus canorus].
ACCESSION   XP_053926797
VERSION     XP_053926797.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070822.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..167
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..167
                     /product="translocator protein"
                     /calculated_mol_wt=18485
     Region          13..157
                     /region_name="TspO_MBR"
                     /note="TspO/MBR family; pfam03073"
                     /db_xref="CDD:460795"
     Site            order(22..23,26,70,82,84..86,88..89,91..93,95..96,99..100,
                     119)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:320706"
     Site            order(25,51..52,54..55,97,145,148..149,152)
                     /site_type="lipid-binding"
                     /note="lipid binding site [chemical binding]"
                     /db_xref="CDD:320706"
     CDS             1..167
                     /gene="TSPO"
                     /coded_by="XM_054070822.1:144..647"
                     /db_xref="GeneID:104067285"
ORIGIN      
        1 mevvpawapa asftllphtg gflgskitkk eipawyaslq kpswcppnwv fapvwgtlyt
       61 smgfgsylvw kelggfteks vvplglyagq lalnwawtpi ffgahkmgwg lvtlllttgt
      121 atattaswyn ikktaaylmv pylawltmas alnyriwkdn rnkkqse
//
LOCUS       XP_053926811             617 aa            linear   VRT 09-MAR-2023
DEFINITION  glypican-6 isoform X1 [Cuculus canorus].
ACCESSION   XP_053926811
VERSION     XP_053926811.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070836.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..617
                     /product="glypican-6 isoform X1"
                     /calculated_mol_wt=69279
     Region          80..611
                     /region_name="Glypican"
                     /note="pfam01153"
                     /db_xref="CDD:460084"
     CDS             1..617
                     /gene="GPC6"
                     /coded_by="XM_054070836.1:99..1952"
                     /db_xref="GeneID:104054878"
ORIGIN      
        1 mcacarpspp rlakvclgdr gapgppppql wgaataarrq rggsagparl ampgllllll
       61 lppllslppa aaaggegkar scgevrqays akgfslasvp yqeiagehlr icpqeytcct
      121 semedklsqq sklefenlve etshfvrttf vsrhkkfdef frellenaer slndmfvrty
      181 gmlymqnsev fqdlftelkr yytggnvnle emlndfwarl lermfqlinp qyhftedyle
      241 cvskytdqlk pfgdvprklk vqvtrafiaa rtfvqgltvg revanrvskv sptpgciral
      301 mkmlycpycr glptvkpcnn yclnvmkgcl anqadldtew nlfidamllv aerlegpfni
      361 esvmdpidvk iseaimnmqe nsmqvsakvf qgcgqpkpap alrssrsvpe nfntrfrpyn
      421 peerpttaag tsldrlrtiw rtmqhgvtdi keklklskkf wstlpytick deqvtagpsi
      481 eedcwnghtk arylpeimnd gltnqinnpe vdvditrpdt firqqimalr vmtnklknay
      541 ngndvnfqdt sdetsgsgsg sgctddicpt efdfvtteap svdsdrreve asatqpgwsl
      601 qtlliifisf vlqrqwr
//
LOCUS       XP_053926821             607 aa            linear   VRT 09-MAR-2023
DEFINITION  glypican-6 isoform X2 [Cuculus canorus].
ACCESSION   XP_053926821
VERSION     XP_053926821.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070846.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..607
                     /product="glypican-6 isoform X2"
                     /calculated_mol_wt=68011
     Region          80..601
                     /region_name="Glypican"
                     /note="pfam01153"
                     /db_xref="CDD:460084"
     CDS             1..607
                     /gene="GPC6"
                     /coded_by="XM_054070846.1:99..1922"
                     /db_xref="GeneID:104054878"
ORIGIN      
        1 mcacarpspp rlakvclgdr gapgppppql wgaataarrq rggsagparl ampgllllll
       61 lppllslppa aaaggegkar scgevrqays akgfslasvp yqeiagehlr icpqeytcct
      121 semedklsqq sklefenlve etshfvrttf vsrhkkfdef frellenaer slndmfvrty
      181 gmlymqnsev fqdlftelkr yytggnvnle emlndfwarl lermfqlinp qyhftedyle
      241 cvskytdqlk pfgdvprklk vqvtrafiaa rtfvqgltvg revanrvskv sptpgciral
      301 mkmlycpycr glptvkpcnn yclnvmkgcl anqadldtew nlfidamllv aerlegpfni
      361 esvmdpidvk iseaimnmqe nsmqvsakvf qgcgqpkpap alrssrsvpe nfntrfrpyn
      421 peerpttaag tsldrlvtdi keklklskkf wstlpytick deqvtagpsi eedcwnghtk
      481 arylpeimnd gltnqinnpe vdvditrpdt firqqimalr vmtnklknay ngndvnfqdt
      541 sdetsgsgsg sgctddicpt efdfvtteap svdsdrreve asatqpgwsl qtlliifisf
      601 vlqrqwr
//
LOCUS       XP_053926831             493 aa            linear   VRT 09-MAR-2023
DEFINITION  glypican-6 isoform X3 [Cuculus canorus].
ACCESSION   XP_053926831
VERSION     XP_053926831.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070856.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..493
                     /product="glypican-6 isoform X3"
                     /calculated_mol_wt=55428
     Region          80..>438
                     /region_name="Glypican"
                     /note="pfam01153"
                     /db_xref="CDD:460084"
     CDS             1..493
                     /gene="GPC6"
                     /coded_by="XM_054070856.1:99..1580"
                     /db_xref="GeneID:104054878"
ORIGIN      
        1 mcacarpspp rlakvclgdr gapgppppql wgaataarrq rggsagparl ampgllllll
       61 lppllslppa aaaggegkar scgevrqays akgfslasvp yqeiagehlr icpqeytcct
      121 semedklsqq sklefenlve etshfvrttf vsrhkkfdef frellenaer slndmfvrty
      181 gmlymqnsev fqdlftelkr yytggnvnle emlndfwarl lermfqlinp qyhftedyle
      241 cvskytdqlk pfgdvprklk vqvtrafiaa rtfvqgltvg revanrvskv sptpgciral
      301 mkmlycpycr glptvkpcnn yclnvmkgcl anqadldtew nlfidamllv aerlegpfni
      361 esvmdpidvk iseaimnmqe nsmqvsakvf qgcgqpkpap alrssrsvpe nfntrfrpyn
      421 peerpttaag tsldrlrtiw rtmqhgvsfg ililhlhshl slynagqnts lsfiftiftl
      481 cmscrlkcwq ffl
//
LOCUS       XP_053926847             583 aa            linear   VRT 09-MAR-2023
DEFINITION  cleavage and polyadenylation specificity factor subunit 6 isoform
            X1 [Cuculus canorus].
ACCESSION   XP_053926847
VERSION     XP_053926847.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070872.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..583
                     /product="cleavage and polyadenylation specificity factor
                     subunit 6 isoform X1"
                     /calculated_mol_wt=62826
     Region          82..158
                     /region_name="RRM_CFIm68"
                     /note="RNA recognition motif (RRM) found in pre-mRNA
                     cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and
                     similar proteins; cd12643"
                     /db_xref="CDD:410048"
     Site            order(90..95,113,116..123)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410048"
     CDS             1..583
                     /gene="CPSF6"
                     /coded_by="XM_054070872.1:94..1845"
                     /db_xref="GeneID:104061508"
ORIGIN      
        1 madgvdhidi yadvgeefnq eaeygghdqi dlyddvisps anngdapedr dymdslppsv
       61 gddvgkgaap nvvytytgkr ialyignltw wttdedltea vhslgvndil eikffenran
      121 gqskgfalvg vgseasskkl mdllpkrelh gqnpvvtpcn kqflsqfemq srkttqsgqm
      181 sgegkagppg gssraafpps nrgrgrfpga ipggdrfpgp agpggppppf pagqtpprpp
      241 lgppgppgpp gppppgqvlp pplagppnrg drppppvlfp gqpfgqpplg plppgppppv
      301 pgygpppgpp ppqqgppppp gpfpprppgp lgppltlapp phlpgpppga pppaphvnpa
      361 ffpppansgi ptsdsrgppp tdpygrpppy drgdygppgr rftgnnmsir eklhipfygr
      421 htknntqnsg remdaarapl seaefeeimn rnraisssai sravsdasag dygsaietlv
      481 taislikqsk vsaddrckvl isslqdclhg iesksygsgs rrrersrerd hsrsreksrr
      541 hksrsrdrhd dyyrersrer erhrdrdrdr drerdrerey rhr
//
LOCUS       XP_053926855             582 aa            linear   VRT 09-MAR-2023
DEFINITION  cleavage and polyadenylation specificity factor subunit 6 isoform
            X2 [Cuculus canorus].
ACCESSION   XP_053926855
VERSION     XP_053926855.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070880.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..582
                     /product="cleavage and polyadenylation specificity factor
                     subunit 6 isoform X2"
                     /calculated_mol_wt=62670
     Region          82..158
                     /region_name="RRM_CFIm68"
                     /note="RNA recognition motif (RRM) found in pre-mRNA
                     cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and
                     similar proteins; cd12643"
                     /db_xref="CDD:410048"
     Site            order(90..95,113,116..123)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410048"
     CDS             1..582
                     /gene="CPSF6"
                     /coded_by="XM_054070880.1:94..1842"
                     /db_xref="GeneID:104061508"
ORIGIN      
        1 madgvdhidi yadvgeefnq eaeygghdqi dlyddvisps anngdapedr dymdslppsv
       61 gddvgkgaap nvvytytgkr ialyignltw wttdedltea vhslgvndil eikffenran
      121 gqskgfalvg vgseasskkl mdllpkrelh gqnpvvtpcn kqflsqfemq srkttqsgqm
      181 sgegkagppg gssraafpps nrgrgrfpga ipggdrfpgp agpggppppf pagqtpprpp
      241 lgppgppgpp gppppgqvlp pplagppnrg drppppvlfp gqpfgqpplg plppgppppv
      301 pgygpppgpp ppqqgppppp gpfpprppgp lgppltlapp phlpgpppga pppaphvnpa
      361 ffpppansgi ptsdsrgppp tdpygrpppy drgdygppgr rftgnnmsir eklhipfygr
      421 htknntqnsg remdaarapl seaefeeimn rnraisssai sravsdasag dygsaietlv
      481 taislikqsk vsaddrckvl isslqdclhg iesksygsgs rrersrerdh srsreksrrh
      541 ksrsrdrhdd yyrersrere rhrdrdrdrd rerdrereyr hr
//
LOCUS       XP_053926865             552 aa            linear   VRT 09-MAR-2023
DEFINITION  cleavage and polyadenylation specificity factor subunit 6 isoform
            X3 [Cuculus canorus].
ACCESSION   XP_053926865
VERSION     XP_053926865.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070890.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..552
                     /product="cleavage and polyadenylation specificity factor
                     subunit 6 isoform X3"
                     /calculated_mol_wt=59169
     Region          82..158
                     /region_name="RRM_CFIm68"
                     /note="RNA recognition motif (RRM) found in pre-mRNA
                     cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and
                     similar proteins; cd12643"
                     /db_xref="CDD:410048"
     Site            order(90..95,113,116..123)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410048"
     CDS             1..552
                     /gene="CPSF6"
                     /coded_by="XM_054070890.1:94..1752"
                     /db_xref="GeneID:104061508"
ORIGIN      
        1 madgvdhidi yadvgeefnq eaeygghdqi dlyddvisps anngdapedr dymdslppsv
       61 gddvgkgaap nvvytytgkr ialyignltw wttdedltea vhslgvndil eikffenran
      121 gqskgfalvg vgseasskkl mdllpkrelh gqnpvvtpcn kqflsqfemq srkttqsgqm
      181 sgegkagppg gssraafpps nrgrgrfpga ipggdrfpgp agpggppppf pagqtpprpp
      241 lgppgppgpp gppppgqvlp pplagppnrg drppppvlfp gqpfgqpplg plppgppppv
      301 pgygpppgpp ppqqgppppp gpfpprppgp lgppltlapp phlpgpppga pppaphvnpa
      361 ffpppansgi ptsdsrgppp tdpygrpppy drgdygppgr emdaarapls eaefeeimnr
      421 nraisssais ravsdasagd ygsaietlvt aislikqskv saddrckvli sslqdclhgi
      481 esksygsgsr rrersrerdh srsreksrrh ksrsrdrhdd yyrersrere rhrdrdrdrd
      541 rerdrereyr hr
//
LOCUS       XP_053926876             551 aa            linear   VRT 09-MAR-2023
DEFINITION  cleavage and polyadenylation specificity factor subunit 6 isoform
            X4 [Cuculus canorus].
ACCESSION   XP_053926876
VERSION     XP_053926876.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070901.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..551
                     /product="cleavage and polyadenylation specificity factor
                     subunit 6 isoform X4"
                     /calculated_mol_wt=59013
     Region          82..158
                     /region_name="RRM_CFIm68"
                     /note="RNA recognition motif (RRM) found in pre-mRNA
                     cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6) and
                     similar proteins; cd12643"
                     /db_xref="CDD:410048"
     Site            order(90..95,113,116..123)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410048"
     CDS             1..551
                     /gene="CPSF6"
                     /coded_by="XM_054070901.1:94..1749"
                     /db_xref="GeneID:104061508"
ORIGIN      
        1 madgvdhidi yadvgeefnq eaeygghdqi dlyddvisps anngdapedr dymdslppsv
       61 gddvgkgaap nvvytytgkr ialyignltw wttdedltea vhslgvndil eikffenran
      121 gqskgfalvg vgseasskkl mdllpkrelh gqnpvvtpcn kqflsqfemq srkttqsgqm
      181 sgegkagppg gssraafpps nrgrgrfpga ipggdrfpgp agpggppppf pagqtpprpp
      241 lgppgppgpp gppppgqvlp pplagppnrg drppppvlfp gqpfgqpplg plppgppppv
      301 pgygpppgpp ppqqgppppp gpfpprppgp lgppltlapp phlpgpppga pppaphvnpa
      361 ffpppansgi ptsdsrgppp tdpygrpppy drgdygppgr emdaarapls eaefeeimnr
      421 nraisssais ravsdasagd ygsaietlvt aislikqskv saddrckvli sslqdclhgi
      481 esksygsgsr rersrerdhs rsreksrrhk srsrdrhddy yrersrerer hrdrdrdrdr
      541 erdrereyrh r
//
LOCUS       XP_053926888             741 aa            linear   VRT 09-MAR-2023
DEFINITION  ribosomal protein S6 kinase alpha-3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053926888
VERSION     XP_053926888.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070913.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..741
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..741
                     /product="ribosomal protein S6 kinase alpha-3 isoform X1"
                     /calculated_mol_wt=83419
     Region          73..389
                     /region_name="STKc_RSK_N"
                     /note="N-terminal catalytic domain of the Serine/Threonine
                     Kinase, 90 kDa ribosomal protein S6 kinase; cd05582"
                     /db_xref="CDD:270734"
     Site            order(75..79,83,99,101,132,148..149,151,155,157,194,196,
                     198..199,201,211..212,215,229..234,261,267,270)
                     /site_type="active"
                     /db_xref="CDD:270734"
     Site            order(75..79,83,99,101,132,149..151,155,194,196,198..199,
                     201,211..212)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270734"
     Site            order(79,155,157,194,196,198,215,229..234,261,267,270)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270734"
     Site            order(211..222,224..234)
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270734"
     Site            370
                     /site_type="other"
                     /note="turn motif phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:270734"
     Site            383..388
                     /site_type="other"
                     /note="hydrophobic motif (HM)"
                     /db_xref="CDD:270734"
     Region          403..741
                     /region_name="STKc_RSK2_C"
                     /note="C-terminal catalytic domain of the Serine/Threonine
                     Kinase, Ribosomal S6 kinase 2 (also called 90kDa ribosomal
                     protein S6 kinase 3 or Ribosomal protein S6 kinase
                     alpha-3); cd14176"
                     /db_xref="CDD:271078"
     Site            order(429..433,435,437,450,452,478,494..497,500..501,503,
                     539..540,542,544..545,547,561..562,565,580..584,586)
                     /site_type="active"
                     /db_xref="CDD:271078"
     Site            order(429..432,435,437,450,452,478,494..497,500..501,
                     544..545,547,561..562)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:271078"
     Site            order(433,501,503,539..540,542,544,565,580..584,586)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:271078"
     Site            561..584
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:271078"
     CDS             1..741
                     /gene="RPS6KA3"
                     /coded_by="XM_054070913.1:98..2323"
                     /db_xref="GeneID:104063383"
ORIGIN      
        1 mplaqladpw qkmavesaae sgaengqqiv depmgeddin pqteegnike iaithhvkeg
       61 hekadpsqfe llkvlgqgsf gkvflvkkis gsdarqlyam kvlkkatlkv rdrvrtkmer
      121 dilvevnhpf ivklhyafqt egklylildf lrggdlftrl skevmftedd vkfylaelal
      181 aldhlhslgi iyrdlkpeni lldeeghikl tdfglskesi dhekkaysfc gtveymapev
      241 vnrrghtqsa dwwsfgvlmf emltgtlpfq gkdrketmtm ilkaklgmpq flspeaqsll
      301 rmlfkrnpan rlgagpdgve eikrhaffsk idwnklyrre ihppfkpatg rpedtfyfdp
      361 eftaktpkds pgippsanah qlfrgfsfva iasddesqam qtvgvhsivq qlhrnsiqft
      421 dgyevkedig vgsysickrc ihkasnmeya vkiidkskrd pteeieillr ygqhpniitl
      481 kdvyddgkyv yvvtelmkgg elldkilrqk ffsereasav lftitktvey lhaqgvvhrd
      541 lkpsnilyvd esgnpesiri cdfgfakqlr aengllmtpc ytanfvapev lkrqgydaac
      601 diwslgvlly tmltgytpfa ngpddtpeei larigsgkfs lsggywntvs dtakdlvskm
      661 lhvdphqrlt aaqvlshpwi vhcdqlpqyq lnrqdaphlv kgamaatysa lnrnqspvle
      721 pvgrstlaqr rgikkitsta l
//
LOCUS       XP_053926899             740 aa            linear   VRT 09-MAR-2023
DEFINITION  ribosomal protein S6 kinase alpha-3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053926899
VERSION     XP_053926899.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070924.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..740
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..740
                     /product="ribosomal protein S6 kinase alpha-3 isoform X2"
                     /calculated_mol_wt=83291
     Region          73..389
                     /region_name="STKc_RSK_N"
                     /note="N-terminal catalytic domain of the Serine/Threonine
                     Kinase, 90 kDa ribosomal protein S6 kinase; cd05582"
                     /db_xref="CDD:270734"
     Site            order(75..79,83,99,101,132,148..149,151,155,157,194,196,
                     198..199,201,211..212,215,229..234,261,267,270)
                     /site_type="active"
                     /db_xref="CDD:270734"
     Site            order(75..79,83,99,101,132,149..151,155,194,196,198..199,
                     201,211..212)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270734"
     Site            order(79,155,157,194,196,198,215,229..234,261,267,270)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270734"
     Site            order(211..222,224..234)
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270734"
     Site            370
                     /site_type="other"
                     /note="turn motif phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:270734"
     Site            383..388
                     /site_type="other"
                     /note="hydrophobic motif (HM)"
                     /db_xref="CDD:270734"
     Region          403..740
                     /region_name="STKc_RSK2_C"
                     /note="C-terminal catalytic domain of the Serine/Threonine
                     Kinase, Ribosomal S6 kinase 2 (also called 90kDa ribosomal
                     protein S6 kinase 3 or Ribosomal protein S6 kinase
                     alpha-3); cd14176"
                     /db_xref="CDD:271078"
     Site            order(428..432,434,436,449,451,477,493..496,499..500,502,
                     538..539,541,543..544,546,560..561,564,579..583,585)
                     /site_type="active"
                     /db_xref="CDD:271078"
     Site            order(428..431,434,436,449,451,477,493..496,499..500,
                     543..544,546,560..561)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:271078"
     Site            order(432,500,502,538..539,541,543,564,579..583,585)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:271078"
     Site            560..583
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:271078"
     CDS             1..740
                     /gene="RPS6KA3"
                     /coded_by="XM_054070924.1:98..2320"
                     /db_xref="GeneID:104063383"
ORIGIN      
        1 mplaqladpw qkmavesaae sgaengqqiv depmgeddin pqteegnike iaithhvkeg
       61 hekadpsqfe llkvlgqgsf gkvflvkkis gsdarqlyam kvlkkatlkv rdrvrtkmer
      121 dilvevnhpf ivklhyafqt egklylildf lrggdlftrl skevmftedd vkfylaelal
      181 aldhlhslgi iyrdlkpeni lldeeghikl tdfglskesi dhekkaysfc gtveymapev
      241 vnrrghtqsa dwwsfgvlmf emltgtlpfq gkdrketmtm ilkaklgmpq flspeaqsll
      301 rmlfkrnpan rlgagpdgve eikrhaffsk idwnklyrre ihppfkpatg rpedtfyfdp
      361 eftaktpkds pgippsanah qlfrgfsfva iasddesqam qtvgvhsivq lhrnsiqftd
      421 gyevkedigv gsysickrci hkasnmeyav kiidkskrdp teeieillry gqhpniitlk
      481 dvyddgkyvy vvtelmkgge lldkilrqkf fsereasavl ftitktveyl haqgvvhrdl
      541 kpsnilyvde sgnpesiric dfgfakqlra engllmtpcy tanfvapevl krqgydaacd
      601 iwslgvllyt mltgytpfan gpddtpeeil arigsgkfsl sggywntvsd takdlvskml
      661 hvdphqrlta aqvlshpwiv hcdqlpqyql nrqdaphlvk gamaatysal nrnqspvlep
      721 vgrstlaqrr gikkitstal
//
LOCUS       XP_053926908             718 aa            linear   VRT 09-MAR-2023
DEFINITION  ribosomal protein S6 kinase alpha-3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053926908
VERSION     XP_053926908.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070933.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..718
                     /product="ribosomal protein S6 kinase alpha-3 isoform X3"
                     /calculated_mol_wt=81037
     Region          50..366
                     /region_name="STKc_RSK_N"
                     /note="N-terminal catalytic domain of the Serine/Threonine
                     Kinase, 90 kDa ribosomal protein S6 kinase; cd05582"
                     /db_xref="CDD:270734"
     Site            order(52..56,60,76,78,109,125..126,128,132,134,171,173,
                     175..176,178,188..189,192,206..211,238,244,247)
                     /site_type="active"
                     /db_xref="CDD:270734"
     Site            order(52..56,60,76,78,109,126..128,132,171,173,175..176,
                     178,188..189)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270734"
     Site            order(56,132,134,171,173,175,192,206..211,238,244,247)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270734"
     Site            order(188..199,201..211)
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270734"
     Site            347
                     /site_type="other"
                     /note="turn motif phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:270734"
     Site            360..365
                     /site_type="other"
                     /note="hydrophobic motif (HM)"
                     /db_xref="CDD:270734"
     Region          380..718
                     /region_name="STKc_RSK2_C"
                     /note="C-terminal catalytic domain of the Serine/Threonine
                     Kinase, Ribosomal S6 kinase 2 (also called 90kDa ribosomal
                     protein S6 kinase 3 or Ribosomal protein S6 kinase
                     alpha-3); cd14176"
                     /db_xref="CDD:271078"
     Site            order(406..410,412,414,427,429,455,471..474,477..478,480,
                     516..517,519,521..522,524,538..539,542,557..561,563)
                     /site_type="active"
                     /db_xref="CDD:271078"
     Site            order(406..409,412,414,427,429,455,471..474,477..478,
                     521..522,524,538..539)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:271078"
     Site            order(410,478,480,516..517,519,521,542,557..561,563)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:271078"
     Site            538..561
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:271078"
     CDS             1..718
                     /gene="RPS6KA3"
                     /coded_by="XM_054070933.1:16..2172"
                     /db_xref="GeneID:104063383"
ORIGIN      
        1 mngqqivdep mgeddinpqt eegnikeiai thhvkeghek adpsqfellk vlgqgsfgkv
       61 flvkkisgsd arqlyamkvl kkatlkvrdr vrtkmerdil vevnhpfivk lhyafqtegk
      121 lylildflrg gdlftrlske vmfteddvkf ylaelalald hlhslgiiyr dlkpenilld
      181 eeghikltdf glskesidhe kkaysfcgtv eymapevvnr rghtqsadww sfgvlmfeml
      241 tgtlpfqgkd rketmtmilk aklgmpqfls peaqsllrml fkrnpanrlg agpdgveeik
      301 rhaffskidw nklyrreihp pfkpatgrpe dtfyfdpeft aktpkdspgi ppsanahqlf
      361 rgfsfvaias ddesqamqtv gvhsivqqlh rnsiqftdgy evkedigvgs ysickrcihk
      421 asnmeyavki idkskrdpte eieillrygq hpniitlkdv yddgkyvyvv telmkggell
      481 dkilrqkffs ereasavlft itktveylha qgvvhrdlkp snilyvdesg npesiricdf
      541 gfakqlraen gllmtpcyta nfvapevlkr qgydaacdiw slgvllytml tgytpfangp
      601 ddtpeeilar igsgkfslsg gywntvsdta kdlvskmlhv dphqrltaaq vlshpwivhc
      661 dqlpqyqlnr qdaphlvkga maatysalnr nqspvlepvg rstlaqrrgi kkitstal
//
LOCUS       XP_053926924             794 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger X-chromosomal protein [Cuculus canorus].
ACCESSION   XP_053926924
VERSION     XP_053926924.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070949.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..794
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..794
                     /product="zinc finger X-chromosomal protein"
                     /calculated_mol_wt=89652
     Region          71..398
                     /region_name="Zfx_Zfy_act"
                     /note="Zfx / Zfy transcription activation region;
                     pfam04704"
                     /db_xref="CDD:461400"
     Region          <415..>446
                     /region_name="ROS_MUCR"
                     /note="ROS/MUCR transcriptional regulator protein;
                     cl19880"
                     /db_xref="CDD:473244"
     Region          415..435
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          447..471
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          479..499
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(484,486,488,490..491,494..495,498,544,546,550..551,
                     554..555,558,572,574,576,578..579,582..583,586)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          532..>790
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          539..559
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          567..586
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          596..645
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          653..673
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          710..730
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(715,717,719,721..722,725..726,729,743,745,749..750,
                     753..754,758,772,774,776,778..779,782..783,786)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          738..759
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          767..787
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..794
                     /gene="ZFX"
                     /coded_by="XM_054070949.1:131..2515"
                     /db_xref="GeneID:104059414"
ORIGIN      
        1 mdedglelqp hepdaffdpt gadaghmdgd qivvevqetv fvsdvvdsdi tvhnfvpddp
       61 dsvviqdvie dvviedvqcp dimeepdvse tviipeqvld advaeevsla hctvpddvla
      121 sditaeamsi pehvltsesm hvpevghveh vvhdnveead ivtdtlgtdv vseevlvadc
      181 aseavidang ipvehqdekg ncedylmisl ddagkieqeg saeitmeaet esgsckvdgi
      241 cpevikvyif kadpgeddlg gtvdivesep endhavglld qnssiripre kmvymtvnds
      301 qhededlnva eiadevymev ivgeedaaaa heqqidesei ktfmpiawaa aygnnndgie
      361 srngtasall hidesaglgr lakqkpkkkr rpesrqyqta iiigpdghpl tvypcmicgk
      421 kfksrgflkr hmknhpehll tkkkyrctdc dyttnkklsl hnhleshklt nkteklidcd
      481 ecgksfshag tlfthkmvhr dkgvnkmhkc kfcdyetaeq gllshhllav hsknfphicv
      541 ecgkgfrhps elkkhmriht gekpyqcqyc eyrsadssnl kthvktkhsk etpykcdicf
      601 qtfpdtkelq qhtimhqesk thqclhcdhk ssnssdlkrh iisvhtkdyp hkcdmcdkgf
      661 hrpselkkhv aahkgkklhq crhcdfkiad pfilsrhils vhtkdlpfrc krcrkgfrqq
      721 nelkkhmkth sgrkvyqcey ceysttdasg fkrhvisiht kdyphrceyc kkgfrrpsek
      781 nqhimrhhkd vglp
//
LOCUS       XP_053926932             794 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger X-chromosomal protein [Cuculus canorus].
ACCESSION   XP_053926932
VERSION     XP_053926932.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070957.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..794
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..794
                     /product="zinc finger X-chromosomal protein"
                     /calculated_mol_wt=89652
     Region          71..398
                     /region_name="Zfx_Zfy_act"
                     /note="Zfx / Zfy transcription activation region;
                     pfam04704"
                     /db_xref="CDD:461400"
     Region          <415..>446
                     /region_name="ROS_MUCR"
                     /note="ROS/MUCR transcriptional regulator protein;
                     cl19880"
                     /db_xref="CDD:473244"
     Region          415..435
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          447..471
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          479..499
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(484,486,488,490..491,494..495,498,544,546,550..551,
                     554..555,558,572,574,576,578..579,582..583,586)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          532..>790
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          539..559
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          567..586
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          596..645
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          653..673
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          710..730
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(715,717,719,721..722,725..726,729,743,745,749..750,
                     753..754,758,772,774,776,778..779,782..783,786)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          738..759
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          767..787
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..794
                     /gene="ZFX"
                     /coded_by="XM_054070957.1:388..2772"
                     /db_xref="GeneID:104059414"
ORIGIN      
        1 mdedglelqp hepdaffdpt gadaghmdgd qivvevqetv fvsdvvdsdi tvhnfvpddp
       61 dsvviqdvie dvviedvqcp dimeepdvse tviipeqvld advaeevsla hctvpddvla
      121 sditaeamsi pehvltsesm hvpevghveh vvhdnveead ivtdtlgtdv vseevlvadc
      181 aseavidang ipvehqdekg ncedylmisl ddagkieqeg saeitmeaet esgsckvdgi
      241 cpevikvyif kadpgeddlg gtvdivesep endhavglld qnssiripre kmvymtvnds
      301 qhededlnva eiadevymev ivgeedaaaa heqqidesei ktfmpiawaa aygnnndgie
      361 srngtasall hidesaglgr lakqkpkkkr rpesrqyqta iiigpdghpl tvypcmicgk
      421 kfksrgflkr hmknhpehll tkkkyrctdc dyttnkklsl hnhleshklt nkteklidcd
      481 ecgksfshag tlfthkmvhr dkgvnkmhkc kfcdyetaeq gllshhllav hsknfphicv
      541 ecgkgfrhps elkkhmriht gekpyqcqyc eyrsadssnl kthvktkhsk etpykcdicf
      601 qtfpdtkelq qhtimhqesk thqclhcdhk ssnssdlkrh iisvhtkdyp hkcdmcdkgf
      661 hrpselkkhv aahkgkklhq crhcdfkiad pfilsrhils vhtkdlpfrc krcrkgfrqq
      721 nelkkhmkth sgrkvyqcey ceysttdasg fkrhvisiht kdyphrceyc kkgfrrpsek
      781 nqhimrhhkd vglp
//
LOCUS       XP_009555277            1487 aa            linear   VRT 09-MAR-2023
DEFINITION  rho GTPase-activating protein 31 [Cuculus canorus].
ACCESSION   XP_009555277
VERSION     XP_009555277.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556982.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555277.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1487
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1487
                     /product="rho GTPase-activating protein 31"
                     /calculated_mol_wt=163160
     Region          17..211
                     /region_name="RhoGAP_CdGAP"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain of CdGAP-like proteins; CdGAP
                     contains an N-terminal RhoGAP domain and a C-terminal
                     proline-rich region, and it is active on both Cdc42 and
                     Rac1 but not RhoA. CdGAP is recruited to...; cd04384"
                     /db_xref="CDD:239849"
     Site            order(56,96,100,169,172..173,202)
                     /site_type="other"
                     /note="putative GTPase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:239849"
     Site            56
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239849"
     CDS             1..1487
                     /gene="ARHGAP31"
                     /coded_by="XM_009556982.2:710..5173"
                     /db_xref="GeneID:104055802"
ORIGIN      
        1 mknkgakqkl krkgaasafg cdlteyless gqdvpyvlks caefiethgi vdgiyrlsgv
       61 tsniqklrqe fvsdqcpdlt reiylqdihc vgslcklyfr elpnplltye lykkfteavs
      121 rfpedeqlar iqnviqelpp shyrtleyli khlthlasfs nmtnmhtrnl alvwapnllr
      181 skeieavgcn gdaaflevrv qqlviefiln hvdqifstnr kascaesies asvvksltlp
      241 saslpmklvs leeaqarsls ashparkerr enslpeivpv tgslfhtvvd lpdskrklst
      301 kskkwksifn lgrsgsesks klsrngsvfv raqklsekat irpaksmdsl cslpvegdde
      361 ksrfkrtvtt ggffvpmmkm rtggtgssyd lskeneweqe gsamgakgss dlsgekgppr
      421 tpqaksppeq lkvfraaeda eteqtsskgg rmfytsetas ksgfpsslfp leasprhqrk
      481 alnisepfav svplrvsavi stnstpcrvp akeklslssl eelsslvaeg aspssleagt
      541 htrteqvleq kekqlestlp aatsrgshpe esltsrktep letpqpaaen qemlcgqsnc
      601 tsstsstqqs seksptleqt pssevhmgpl padkaeqgql ktkdvssegs caqqecdtak
      661 teersrlrdv tenpanalle plwpeiqqel kiiepeeell llpaavpkrg lisepsssvq
      721 tdssssgksp ilseqksesr tpqiktqvtl fgatsteqqd slhncqsdvv aqqscasall
      781 klgtlptsaa ppknhhpvvd srnecltrpl dwklnsqsef nevasndefs cskgghpesg
      841 rekhsicqlq rekdgltrvq tqrekseimi aderdtlssk alsgagiqel kegsavsrih
      901 dagdqddedt wtdnvqslel vepwedhqwv tsplhsptfk diqevqefqp qsqrtgtgls
      961 lrprfsrsls ldskdtvmsl wtipfsfida tdqeqpcsdi lpvtrelpkt qlissstlsk
     1021 aqrdgsdtsp peepskpeel rypasrdeal tekegsskip lsgpeekkvd vskenpwtsk
     1081 pelslpyqns psgssqaknt ekelpmsqdt algeetitka lcsptesqrs nkgeetprkv
     1141 ktrpsslnld sllsapdfft feslsmpsap gnllcgqkev kssdsvpslp ttcpavskgi
     1201 pwgshfnahv dldldylava hattgrrnsa pvsvsavrts fmikmcqara vpvippkiqy
     1261 tqipqplqaq natlsaekke aeakqtirqt qqvawsrled pkspltekka kaekensdpa
     1321 qkdstcpwhn slgsplepsq sshhpaldap vlrrkrtseg easgdnpqss kmerpsgfsk
     1381 psyrsrpgrp qslilfsppf pimdhpsssa dsrvllspir sptqttsssp icgdmsetsw
     1441 ttpegvtlrn kmtipkngqr letstscfyq pqrrsvildg rsgrqie
//
LOCUS       XP_053926947             330 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 255B isoform X1 [Cuculus canorus].
ACCESSION   XP_053926947
VERSION     XP_053926947.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070972.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..330
                     /product="transmembrane protein 255B isoform X1"
                     /calculated_mol_wt=35491
     Region          7..327
                     /region_name="FAM70"
                     /note="FAM70 protein; pfam14967"
                     /db_xref="CDD:464411"
     CDS             1..330
                     /gene="TMEM255B"
                     /coded_by="XM_054070972.1:23..1015"
                     /db_xref="GeneID:104056670"
ORIGIN      
        1 mapppvpalp galpvlehtg qfakrkktsl wftvsllvvs vfiltiglaa ttrtenvtvg
       61 gyypgivlgf gsflgivgih lvenrrqmlv asivfisfgv vaafccaivd gvfaarhiep
      121 rplynkrcqf yssgtgflyd tyqtevtcyt lnsncqlkvk sntcyccdly ncenaeqsss
      181 yyeflgvssc qdvvhlyrll wsstvlniig lflgiitaai lgafkdmapl sqiafsaapp
      241 pqilynpaqq iltyagfcps aatistypsy plplqpasnf pgtsstdisl seetqppsqs
      301 sssyglpasa palytptyfl pgekpppyap
//
LOCUS       XP_053926958             318 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 255B isoform X2 [Cuculus canorus].
ACCESSION   XP_053926958
VERSION     XP_053926958.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070983.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="transmembrane protein 255B isoform X2"
                     /calculated_mol_wt=34312
     Region          8..315
                     /region_name="FAM70"
                     /note="FAM70 protein; pfam14967"
                     /db_xref="CDD:464411"
     CDS             1..318
                     /gene="TMEM255B"
                     /coded_by="XM_054070983.1:72..1028"
                     /db_xref="GeneID:104056670"
ORIGIN      
        1 mettcgsgqf akrkktslwf tvsllvvsvf iltiglaatt rtenvtvggy ypgivlgfgs
       61 flgivgihlv enrrqmlvas ivfisfgvva afccaivdgv faarhieprp lynkrcqfys
      121 sgtgflydty qtevtcytln sncqlkvksn tcyccdlync enaeqsssyy eflgvsscqd
      181 vvhlyrllws stvlniiglf lgiitaailg afkdmaplsq iafsaapppq ilynpaqqil
      241 tyagfcpsaa tistypsypl plqpasnfpg tsstdislse etqppsqsss syglpasapa
      301 lytptyflpg ekpppyap
//
LOCUS       XP_053926967             670 aa            linear   VRT 09-MAR-2023
DEFINITION  growth arrest-specific protein 6 [Cuculus canorus].
ACCESSION   XP_053926967
VERSION     XP_053926967.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054070992.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..670
                     /product="growth arrest-specific protein 6"
                     /calculated_mol_wt=74379
     Region          23..86
                     /region_name="GLA"
                     /note="Domain containing Gla (gamma-carboxyglutamate)
                     residues; smart00069"
                     /db_xref="CDD:214503"
     Region          112..148
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; cd00054"
                     /db_xref="CDD:238011"
     Region          154..188
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          190..231
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain; smart00179"
                     /db_xref="CDD:214542"
     Site            order(190,193,208)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238011"
     Region          232..>257
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain; smart00179"
                     /db_xref="CDD:214542"
     Site            order(232,235,247)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238011"
     Region          292..444
                     /region_name="LamG"
                     /note="Laminin G domain; Laminin G-like domains are
                     usually Ca++ mediated receptors that can have binding
                     sites for steroids, beta1 integrins, heparin, sulfatides,
                     fibulin-1, and alpha-dystroglycans. Proteins that contain
                     LamG domains serve a variety of...; cd00110"
                     /db_xref="CDD:238058"
     Region          471..637
                     /region_name="LamG"
                     /note="Laminin G domain; Laminin G-like domains are
                     usually Ca++ mediated receptors that can have binding
                     sites for steroids, beta1 integrins, heparin, sulfatides,
                     fibulin-1, and alpha-dystroglycans. Proteins that contain
                     LamG domains serve a variety of...; cd00110"
                     /db_xref="CDD:238058"
     CDS             1..670
                     /gene="GAS6"
                     /coded_by="XM_054070992.1:176..2188"
                     /db_xref="GeneID:104056672"
ORIGIN      
        1 mphpaaplga alllvllaad ssqtvllrar easqflrqrq rrayqifeea kqghlerecv
       61 eehcskeear evfendpete yfyprylaci qkygspytrs pdfltcvhnl pnqcspdpch
      121 kegtikcedl kgdfyckckh gwqgktcekd idecraqngg cnqlclnklg syrcscysgy
      181 alkdsktced idectastdi cgeahcknlv ssyecvcdag ykyddlrktc qdineceekl
      241 ceqtcvnspg sytcycdgkg gvklsrdmnt ceniipcvpf avgksiksly lgrmfsgtpv
      301 irlrfkrkql trlvaefdfr tfdpegilff agghrdstwv vlalrkgrle lqlkysgigr
      361 vtssgplinh gmwqtisaee lqrslvikvn rdavmkiavs gdlftldkgl yqlnltvggi
      421 pfktkdlilp inprldgcmr awnwlngedt tiqetikmne kmqcfsvagr gsfypgrgfa
      481 vfnltyiqps sgndstiswe ievnaaiqpa tdtgvlfalv teeasvplsl slidyhstkk
      541 lkqqfiival enlvvsrlai nlcdkkehsv dillnkdqls lrvdgvages elsiselkds
      601 lsilesslqs avktyvgglp dvpvtstpvt asyhgcmtvk lsnqaldlde alykhsdits
      661 hscppveagq
//
LOCUS       XP_053926981            1132 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA-directed RNA polymerase III subunit RPC2 [Cuculus canorus].
ACCESSION   XP_053926981
VERSION     XP_053926981.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071006.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1132
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1132
                     /product="DNA-directed RNA polymerase III subunit RPC2"
                     /calculated_mol_wt=127354
     Region          39..1126
                     /region_name="RNA_pol_B_RPB2"
                     /note="RNA polymerase beta subunit. RNA polymerases
                     catalyse the DNA dependent polymerization of RNA.
                     Prokaryotes contain a single RNA polymerase compared to
                     three in eukaryotes (not including mitochondrial. and
                     chloroplast polymerases). Each RNA polymerase...; cd00653"
                     /db_xref="CDD:238353"
     Site            order(105,767,809,811,815..817,819)
                     /site_type="other"
                     /note="RPB12 interaction site [polypeptide binding]"
                     /db_xref="CDD:238353"
     Site            order(466,468..470,472,475,480,657,675..677,679,742..745,
                     748,750..752,903,905,907,929,931,934,937,942,946,963,990,
                     998..1000,1002,1015,1018..1020,1022..1023,1044..1046,1050,
                     1052..1053,1055,1057..1062,1064..1069,1073,1106,1110,1112,
                     1114..1115,1117,1119..1122,1124,1126)
                     /site_type="other"
                     /note="RPB1 interaction site [polypeptide binding]"
                     /db_xref="CDD:238353"
     Region          538..599
                     /region_name="RNA_pol_Rpb2_4"
                     /note="RNA polymerase Rpb2, domain 4; pfam04566"
                     /db_xref="CDD:428012"
     Region          620..660
                     /region_name="RNA_pol_Rpb2_5"
                     /note="RNA polymerase Rpb2, domain 5; pfam04567"
                     /db_xref="CDD:428013"
     Site            order(715..716,737,739,760,763,912,925,952..953,955,986,
                     1003)
                     /site_type="other"
                     /note="RPB10 interaction site [polypeptide binding]"
                     /db_xref="CDD:238353"
     Site            order(748,762,911,992)
                     /site_type="other"
                     /note="RPB11 interaction site [polypeptide binding]"
                     /db_xref="CDD:238353"
     Site            order(762..763,767,885,887,912..914,917,919..920,991..998,
                     1000)
                     /site_type="other"
                     /note="RPB3 interaction site [polypeptide binding]"
                     /db_xref="CDD:238353"
     CDS             1..1132
                     /gene="POLR3B"
                     /coded_by="XM_054071006.1:49..3447"
                     /db_xref="GeneID:104063468"
ORIGIN      
        1 mealaaelga ltpeqaaapv ntveekwrll paflkvkglv kqhidsfnyf inveikkimk
       61 anekvtsdad pmwylkylni yvgtpdvdes fnvtrpvsph ecrlrdmtys apitvdieyt
      121 rgsqriirna lpigrmpiml rssncvltgk tpaefaklne cpldpggyfi vkgvekvili
      181 qeqlsknrii veadrkgtvg asvtssthek ksrtnmvvkq grfylrhntl sedipiaiif
      241 kamgvesdqe ivqmigteeh vmaafapsle ecqkaqiftq mqalkyignk vrrqrmwggp
      301 kktkmeeare llastilthv lvkefnfrak ciytavmvrr vilaqgenkv ddrdyygnkr
      361 lelagqllsl lfedlfkkfn selkkiadqv ipkqraaqfd vvkhmrqdqi tngmvnaist
      421 gnwslkrfkm drqgvtqvls rlsyisalgm mtrissqfek trkvsgprsl qpsqwgmlcp
      481 sdtpegeacg lvknlalmth ittdmedgpi iklasnlgve dvnllcgeel sypnvflvfl
      541 ngnilgvird hqklvntfri lrragyinef vsistnlsdr cvyissdggr lcrpyiivkk
      601 qkpavtnkhm eelaqgyrnf edflheglve yldvneendc nialyehtin kdtthleiep
      661 ftllgvcagl ipyphhnqsp rntyqcamgk qamgtigynq rnridtlmyl laypqkpmvk
      721 tktielidfe klpagqnatv avmsysgydi edalvlnkas ldrgfgrclv yknakctlkr
      781 ytnqtfdkvm gpmldaatrk piwrheilda dgicspgekv enkqvlvnks mptvtqtple
      841 gssvpqqpqy kdvpvtykga tdsyiekvmi ssnaedafli kmllrqtrrp eigdkfssrh
      901 gqkgvcgliv pqedmpfcdt gicpdiimnp hgfpsrmtvg kliellagka gvldgrfhyg
      961 tafggskvkd vcedlirhgy nylgkdyvts gitgepleay iyfgpvyyqk lkhmvldkmh
     1021 arargpravl trqptegrsr dgglrlgeme rdcligygas mlllerlmis sdafevdvcg
     1081 qcgllgysgw chycksschv sslripyack llfqelqsmn iiprlklaky ne
//
LOCUS       XP_009563942             672 aa            linear   VRT 09-MAR-2023
DEFINITION  NUAK family SNF1-like kinase 1 [Cuculus canorus].
ACCESSION   XP_009563942
VERSION     XP_009563942.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565647.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009563942.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..672
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..672
                     /product="NUAK family SNF1-like kinase 1"
                     /calculated_mol_wt=75429
     Region          64..317
                     /region_name="STKc_NUAK"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     novel (nua) kinase family NUAK; cd14073"
                     /db_xref="CDD:270975"
     Site            order(72..76,80,93,95,127,143..146,150,152..153,155,
                     188..189,191,193..194,196,206..207,210,223..228,230,
                     260..263,265)
                     /site_type="active"
                     /db_xref="CDD:270975"
     Site            order(72..75,80,93,95,127,143..146,150,193..194,196,
                     206..207)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270975"
     Site            order(150,152..153,155,189,191,193,210,223..228,230,
                     260..263,265)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270975"
     Site            206..228
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270975"
     CDS             1..672
                     /gene="NUAK1"
                     /coded_by="XM_009565647.2:60..2078"
                     /db_xref="GeneID:104063470"
ORIGIN      
        1 megdgaaapg ppgpeqpcgs sgeaaaaalg eppggapspe gaaaaarkqq qgvkrhhhkh
       61 nlkhryelqe tlgkgtygkv kraierfsgr vvaiksirkd kikdeqdmvh irreieimss
      121 lshphiitiy evfenkdkiv iimeyaskge lydyiserrr lseretrhff rqivsavhyc
      181 hknsvvhrdl klenillddn fnikiadfgl snlyqkdkfl qtfcgsplya speivngrpy
      241 rgpevdswal gvllytlvyg tmpfdgfdhk nlirqissge yreptqtsda rglirwmlmv
      301 nperratied ianhwwvnwg ykssvcdcda mrdsesplla rfidwhhrst glqpetdtki
      361 kclskpkgpe vtlerqrslk kskkendiaq siqeggaena skstskrpkg ilkkrsnseh
      421 rshsagfieg vvspvlpsaf kleqelcrtg vaiksvvege iavkygtkqs slmpkkgilk
      481 ktqqresgyy sspersesse lldnndeavn sdtspgvtep prngsyghsc rrkgilkhns
      541 kystsstesa lispdtptle ameetvlpgd alprsysrps svisddsils sdsfdlldlq
      601 enrsnrqrir scvsaenflq iqdfeglqnr prsqylkryr nrladssfsl ltdmddvtqv
      661 ykkaleicnk ln
//
LOCUS       XP_053927005             512 aa            linear   VRT 09-MAR-2023
DEFINITION  T-complex protein 11-like protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053927005
VERSION     XP_053927005.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071030.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..512
                     /product="T-complex protein 11-like protein 2 isoform X1"
                     /calculated_mol_wt=57266
     Region          70..491
                     /region_name="Tcp11"
                     /note="T-complex protein 11; pfam05794"
                     /db_xref="CDD:461743"
     CDS             1..512
                     /gene="TCP11L2"
                     /coded_by="XM_054071030.1:343..1881"
                     /db_xref="GeneID:104063469"
ORIGIN      
        1 mplnddqnsd sdssrlsest asssdseysr qsfnsdsssk psspasaspp kavtfdelma
       61 aaknlsdltl aheiavnanf cikkedlpqn slagrvkqiv hkafwdvles elnedppeye
      121 haiklfeeik eillsfltpg anrmqnqice vldtdlirqq aehnavdihg lanyiintmg
      181 klcapirddd ikqlkatdni vellrqifrv ldlmkmdman ytiqklrpyl qhnlvdyera
      241 kfqeileetp saldlttewi kesiedelss ipdesssspg adssskptis pvlvlnnsyl
      301 kllqwdyrkt ipetlitdeg rlqelkekln qlkiiacvcl itnnmvgpai vdvpdfadel
      361 kricvplled mnkktfdlke alnaigvqic nkvnrslter glptlnaemq snlmgqiahi
      421 veennpissl idkriqffmr sllalpsfqm rmpampggls vvqtemelvg sqyasivnfn
      481 kkvygpfyas ifrkllfpem avgkaetetv an
//
LOCUS       XP_053927015             512 aa            linear   VRT 09-MAR-2023
DEFINITION  T-complex protein 11-like protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053927015
VERSION     XP_053927015.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071040.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..512
                     /product="T-complex protein 11-like protein 2 isoform X1"
                     /calculated_mol_wt=57266
     Region          70..491
                     /region_name="Tcp11"
                     /note="T-complex protein 11; pfam05794"
                     /db_xref="CDD:461743"
     CDS             1..512
                     /gene="TCP11L2"
                     /coded_by="XM_054071040.1:681..2219"
                     /db_xref="GeneID:104063469"
ORIGIN      
        1 mplnddqnsd sdssrlsest asssdseysr qsfnsdsssk psspasaspp kavtfdelma
       61 aaknlsdltl aheiavnanf cikkedlpqn slagrvkqiv hkafwdvles elnedppeye
      121 haiklfeeik eillsfltpg anrmqnqice vldtdlirqq aehnavdihg lanyiintmg
      181 klcapirddd ikqlkatdni vellrqifrv ldlmkmdman ytiqklrpyl qhnlvdyera
      241 kfqeileetp saldlttewi kesiedelss ipdesssspg adssskptis pvlvlnnsyl
      301 kllqwdyrkt ipetlitdeg rlqelkekln qlkiiacvcl itnnmvgpai vdvpdfadel
      361 kricvplled mnkktfdlke alnaigvqic nkvnrslter glptlnaemq snlmgqiahi
      421 veennpissl idkriqffmr sllalpsfqm rmpampggls vvqtemelvg sqyasivnfn
      481 kkvygpfyas ifrkllfpem avgkaetetv an
//
LOCUS       XP_053927026             512 aa            linear   VRT 09-MAR-2023
DEFINITION  T-complex protein 11-like protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053927026
VERSION     XP_053927026.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071051.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..512
                     /product="T-complex protein 11-like protein 2 isoform X1"
                     /calculated_mol_wt=57266
     Region          70..491
                     /region_name="Tcp11"
                     /note="T-complex protein 11; pfam05794"
                     /db_xref="CDD:461743"
     CDS             1..512
                     /gene="TCP11L2"
                     /coded_by="XM_054071051.1:2569..4107"
                     /db_xref="GeneID:104063469"
ORIGIN      
        1 mplnddqnsd sdssrlsest asssdseysr qsfnsdsssk psspasaspp kavtfdelma
       61 aaknlsdltl aheiavnanf cikkedlpqn slagrvkqiv hkafwdvles elnedppeye
      121 haiklfeeik eillsfltpg anrmqnqice vldtdlirqq aehnavdihg lanyiintmg
      181 klcapirddd ikqlkatdni vellrqifrv ldlmkmdman ytiqklrpyl qhnlvdyera
      241 kfqeileetp saldlttewi kesiedelss ipdesssspg adssskptis pvlvlnnsyl
      301 kllqwdyrkt ipetlitdeg rlqelkekln qlkiiacvcl itnnmvgpai vdvpdfadel
      361 kricvplled mnkktfdlke alnaigvqic nkvnrslter glptlnaemq snlmgqiahi
      421 veennpissl idkriqffmr sllalpsfqm rmpampggls vvqtemelvg sqyasivnfn
      481 kkvygpfyas ifrkllfpem avgkaetetv an
//
LOCUS       XP_053927037             512 aa            linear   VRT 09-MAR-2023
DEFINITION  T-complex protein 11-like protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053927037
VERSION     XP_053927037.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071062.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..512
                     /product="T-complex protein 11-like protein 2 isoform X1"
                     /calculated_mol_wt=57266
     Region          70..491
                     /region_name="Tcp11"
                     /note="T-complex protein 11; pfam05794"
                     /db_xref="CDD:461743"
     CDS             1..512
                     /gene="TCP11L2"
                     /coded_by="XM_054071062.1:388..1926"
                     /db_xref="GeneID:104063469"
ORIGIN      
        1 mplnddqnsd sdssrlsest asssdseysr qsfnsdsssk psspasaspp kavtfdelma
       61 aaknlsdltl aheiavnanf cikkedlpqn slagrvkqiv hkafwdvles elnedppeye
      121 haiklfeeik eillsfltpg anrmqnqice vldtdlirqq aehnavdihg lanyiintmg
      181 klcapirddd ikqlkatdni vellrqifrv ldlmkmdman ytiqklrpyl qhnlvdyera
      241 kfqeileetp saldlttewi kesiedelss ipdesssspg adssskptis pvlvlnnsyl
      301 kllqwdyrkt ipetlitdeg rlqelkekln qlkiiacvcl itnnmvgpai vdvpdfadel
      361 kricvplled mnkktfdlke alnaigvqic nkvnrslter glptlnaemq snlmgqiahi
      421 veennpissl idkriqffmr sllalpsfqm rmpampggls vvqtemelvg sqyasivnfn
      481 kkvygpfyas ifrkllfpem avgkaetetv an
//
LOCUS       XP_053927049             512 aa            linear   VRT 09-MAR-2023
DEFINITION  T-complex protein 11-like protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053927049
VERSION     XP_053927049.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071074.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..512
                     /product="T-complex protein 11-like protein 2 isoform X1"
                     /calculated_mol_wt=57266
     Region          70..491
                     /region_name="Tcp11"
                     /note="T-complex protein 11; pfam05794"
                     /db_xref="CDD:461743"
     CDS             1..512
                     /gene="TCP11L2"
                     /coded_by="XM_054071074.1:470..2008"
                     /db_xref="GeneID:104063469"
ORIGIN      
        1 mplnddqnsd sdssrlsest asssdseysr qsfnsdsssk psspasaspp kavtfdelma
       61 aaknlsdltl aheiavnanf cikkedlpqn slagrvkqiv hkafwdvles elnedppeye
      121 haiklfeeik eillsfltpg anrmqnqice vldtdlirqq aehnavdihg lanyiintmg
      181 klcapirddd ikqlkatdni vellrqifrv ldlmkmdman ytiqklrpyl qhnlvdyera
      241 kfqeileetp saldlttewi kesiedelss ipdesssspg adssskptis pvlvlnnsyl
      301 kllqwdyrkt ipetlitdeg rlqelkekln qlkiiacvcl itnnmvgpai vdvpdfadel
      361 kricvplled mnkktfdlke alnaigvqic nkvnrslter glptlnaemq snlmgqiahi
      421 veennpissl idkriqffmr sllalpsfqm rmpampggls vvqtemelvg sqyasivnfn
      481 kkvygpfyas ifrkllfpem avgkaetetv an
//
LOCUS       XP_053927060             512 aa            linear   VRT 09-MAR-2023
DEFINITION  T-complex protein 11-like protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053927060
VERSION     XP_053927060.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071085.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..512
                     /product="T-complex protein 11-like protein 2 isoform X1"
                     /calculated_mol_wt=57266
     Region          70..491
                     /region_name="Tcp11"
                     /note="T-complex protein 11; pfam05794"
                     /db_xref="CDD:461743"
     CDS             1..512
                     /gene="TCP11L2"
                     /coded_by="XM_054071085.1:388..1926"
                     /db_xref="GeneID:104063469"
ORIGIN      
        1 mplnddqnsd sdssrlsest asssdseysr qsfnsdsssk psspasaspp kavtfdelma
       61 aaknlsdltl aheiavnanf cikkedlpqn slagrvkqiv hkafwdvles elnedppeye
      121 haiklfeeik eillsfltpg anrmqnqice vldtdlirqq aehnavdihg lanyiintmg
      181 klcapirddd ikqlkatdni vellrqifrv ldlmkmdman ytiqklrpyl qhnlvdyera
      241 kfqeileetp saldlttewi kesiedelss ipdesssspg adssskptis pvlvlnnsyl
      301 kllqwdyrkt ipetlitdeg rlqelkekln qlkiiacvcl itnnmvgpai vdvpdfadel
      361 kricvplled mnkktfdlke alnaigvqic nkvnrslter glptlnaemq snlmgqiahi
      421 veennpissl idkriqffmr sllalpsfqm rmpampggls vvqtemelvg sqyasivnfn
      481 kkvygpfyas ifrkllfpem avgkaetetv an
//
LOCUS       XP_053927070             512 aa            linear   VRT 09-MAR-2023
DEFINITION  T-complex protein 11-like protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053927070
VERSION     XP_053927070.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071095.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..512
                     /product="T-complex protein 11-like protein 2 isoform X1"
                     /calculated_mol_wt=57266
     Region          70..491
                     /region_name="Tcp11"
                     /note="T-complex protein 11; pfam05794"
                     /db_xref="CDD:461743"
     CDS             1..512
                     /gene="TCP11L2"
                     /coded_by="XM_054071095.1:552..2090"
                     /db_xref="GeneID:104063469"
ORIGIN      
        1 mplnddqnsd sdssrlsest asssdseysr qsfnsdsssk psspasaspp kavtfdelma
       61 aaknlsdltl aheiavnanf cikkedlpqn slagrvkqiv hkafwdvles elnedppeye
      121 haiklfeeik eillsfltpg anrmqnqice vldtdlirqq aehnavdihg lanyiintmg
      181 klcapirddd ikqlkatdni vellrqifrv ldlmkmdman ytiqklrpyl qhnlvdyera
      241 kfqeileetp saldlttewi kesiedelss ipdesssspg adssskptis pvlvlnnsyl
      301 kllqwdyrkt ipetlitdeg rlqelkekln qlkiiacvcl itnnmvgpai vdvpdfadel
      361 kricvplled mnkktfdlke alnaigvqic nkvnrslter glptlnaemq snlmgqiahi
      421 veennpissl idkriqffmr sllalpsfqm rmpampggls vvqtemelvg sqyasivnfn
      481 kkvygpfyas ifrkllfpem avgkaetetv an
//
LOCUS       XP_053927079             512 aa            linear   VRT 09-MAR-2023
DEFINITION  T-complex protein 11-like protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053927079
VERSION     XP_053927079.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071104.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..512
                     /product="T-complex protein 11-like protein 2 isoform X1"
                     /calculated_mol_wt=57266
     Region          70..491
                     /region_name="Tcp11"
                     /note="T-complex protein 11; pfam05794"
                     /db_xref="CDD:461743"
     CDS             1..512
                     /gene="TCP11L2"
                     /coded_by="XM_054071104.1:2440..3978"
                     /db_xref="GeneID:104063469"
ORIGIN      
        1 mplnddqnsd sdssrlsest asssdseysr qsfnsdsssk psspasaspp kavtfdelma
       61 aaknlsdltl aheiavnanf cikkedlpqn slagrvkqiv hkafwdvles elnedppeye
      121 haiklfeeik eillsfltpg anrmqnqice vldtdlirqq aehnavdihg lanyiintmg
      181 klcapirddd ikqlkatdni vellrqifrv ldlmkmdman ytiqklrpyl qhnlvdyera
      241 kfqeileetp saldlttewi kesiedelss ipdesssspg adssskptis pvlvlnnsyl
      301 kllqwdyrkt ipetlitdeg rlqelkekln qlkiiacvcl itnnmvgpai vdvpdfadel
      361 kricvplled mnkktfdlke alnaigvqic nkvnrslter glptlnaemq snlmgqiahi
      421 veennpissl idkriqffmr sllalpsfqm rmpampggls vvqtemelvg sqyasivnfn
      481 kkvygpfyas ifrkllfpem avgkaetetv an
//
LOCUS       XP_053927082             512 aa            linear   VRT 09-MAR-2023
DEFINITION  T-complex protein 11-like protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053927082
VERSION     XP_053927082.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071107.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..512
                     /product="T-complex protein 11-like protein 2 isoform X1"
                     /calculated_mol_wt=57266
     Region          70..491
                     /region_name="Tcp11"
                     /note="T-complex protein 11; pfam05794"
                     /db_xref="CDD:461743"
     CDS             1..512
                     /gene="TCP11L2"
                     /coded_by="XM_054071107.1:2358..3896"
                     /db_xref="GeneID:104063469"
ORIGIN      
        1 mplnddqnsd sdssrlsest asssdseysr qsfnsdsssk psspasaspp kavtfdelma
       61 aaknlsdltl aheiavnanf cikkedlpqn slagrvkqiv hkafwdvles elnedppeye
      121 haiklfeeik eillsfltpg anrmqnqice vldtdlirqq aehnavdihg lanyiintmg
      181 klcapirddd ikqlkatdni vellrqifrv ldlmkmdman ytiqklrpyl qhnlvdyera
      241 kfqeileetp saldlttewi kesiedelss ipdesssspg adssskptis pvlvlnnsyl
      301 kllqwdyrkt ipetlitdeg rlqelkekln qlkiiacvcl itnnmvgpai vdvpdfadel
      361 kricvplled mnkktfdlke alnaigvqic nkvnrslter glptlnaemq snlmgqiahi
      421 veennpissl idkriqffmr sllalpsfqm rmpampggls vvqtemelvg sqyasivnfn
      481 kkvygpfyas ifrkllfpem avgkaetetv an
//
LOCUS       XP_053927092             512 aa            linear   VRT 09-MAR-2023
DEFINITION  T-complex protein 11-like protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053927092
VERSION     XP_053927092.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071117.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..512
                     /product="T-complex protein 11-like protein 2 isoform X1"
                     /calculated_mol_wt=57266
     Region          70..491
                     /region_name="Tcp11"
                     /note="T-complex protein 11; pfam05794"
                     /db_xref="CDD:461743"
     CDS             1..512
                     /gene="TCP11L2"
                     /coded_by="XM_054071117.1:426..1964"
                     /db_xref="GeneID:104063469"
ORIGIN      
        1 mplnddqnsd sdssrlsest asssdseysr qsfnsdsssk psspasaspp kavtfdelma
       61 aaknlsdltl aheiavnanf cikkedlpqn slagrvkqiv hkafwdvles elnedppeye
      121 haiklfeeik eillsfltpg anrmqnqice vldtdlirqq aehnavdihg lanyiintmg
      181 klcapirddd ikqlkatdni vellrqifrv ldlmkmdman ytiqklrpyl qhnlvdyera
      241 kfqeileetp saldlttewi kesiedelss ipdesssspg adssskptis pvlvlnnsyl
      301 kllqwdyrkt ipetlitdeg rlqelkekln qlkiiacvcl itnnmvgpai vdvpdfadel
      361 kricvplled mnkktfdlke alnaigvqic nkvnrslter glptlnaemq snlmgqiahi
      421 veennpissl idkriqffmr sllalpsfqm rmpampggls vvqtemelvg sqyasivnfn
      481 kkvygpfyas ifrkllfpem avgkaetetv an
//
LOCUS       XP_053927102             512 aa            linear   VRT 09-MAR-2023
DEFINITION  T-complex protein 11-like protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053927102
VERSION     XP_053927102.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071127.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..512
                     /product="T-complex protein 11-like protein 2 isoform X1"
                     /calculated_mol_wt=57266
     Region          70..491
                     /region_name="Tcp11"
                     /note="T-complex protein 11; pfam05794"
                     /db_xref="CDD:461743"
     CDS             1..512
                     /gene="TCP11L2"
                     /coded_by="XM_054071127.1:179..1717"
                     /db_xref="GeneID:104063469"
ORIGIN      
        1 mplnddqnsd sdssrlsest asssdseysr qsfnsdsssk psspasaspp kavtfdelma
       61 aaknlsdltl aheiavnanf cikkedlpqn slagrvkqiv hkafwdvles elnedppeye
      121 haiklfeeik eillsfltpg anrmqnqice vldtdlirqq aehnavdihg lanyiintmg
      181 klcapirddd ikqlkatdni vellrqifrv ldlmkmdman ytiqklrpyl qhnlvdyera
      241 kfqeileetp saldlttewi kesiedelss ipdesssspg adssskptis pvlvlnnsyl
      301 kllqwdyrkt ipetlitdeg rlqelkekln qlkiiacvcl itnnmvgpai vdvpdfadel
      361 kricvplled mnkktfdlke alnaigvqic nkvnrslter glptlnaemq snlmgqiahi
      421 veennpissl idkriqffmr sllalpsfqm rmpampggls vvqtemelvg sqyasivnfn
      481 kkvygpfyas ifrkllfpem avgkaetetv an
//
LOCUS       XP_053927112             512 aa            linear   VRT 09-MAR-2023
DEFINITION  T-complex protein 11-like protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053927112
VERSION     XP_053927112.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071137.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..512
                     /product="T-complex protein 11-like protein 2 isoform X1"
                     /calculated_mol_wt=57266
     Region          70..491
                     /region_name="Tcp11"
                     /note="T-complex protein 11; pfam05794"
                     /db_xref="CDD:461743"
     CDS             1..512
                     /gene="TCP11L2"
                     /coded_by="XM_054071137.1:185..1723"
                     /db_xref="GeneID:104063469"
ORIGIN      
        1 mplnddqnsd sdssrlsest asssdseysr qsfnsdsssk psspasaspp kavtfdelma
       61 aaknlsdltl aheiavnanf cikkedlpqn slagrvkqiv hkafwdvles elnedppeye
      121 haiklfeeik eillsfltpg anrmqnqice vldtdlirqq aehnavdihg lanyiintmg
      181 klcapirddd ikqlkatdni vellrqifrv ldlmkmdman ytiqklrpyl qhnlvdyera
      241 kfqeileetp saldlttewi kesiedelss ipdesssspg adssskptis pvlvlnnsyl
      301 kllqwdyrkt ipetlitdeg rlqelkekln qlkiiacvcl itnnmvgpai vdvpdfadel
      361 kricvplled mnkktfdlke alnaigvqic nkvnrslter glptlnaemq snlmgqiahi
      421 veennpissl idkriqffmr sllalpsfqm rmpampggls vvqtemelvg sqyasivnfn
      481 kkvygpfyas ifrkllfpem avgkaetetv an
//
LOCUS       XP_053927118             512 aa            linear   VRT 09-MAR-2023
DEFINITION  T-complex protein 11-like protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053927118
VERSION     XP_053927118.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071143.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..512
                     /product="T-complex protein 11-like protein 2 isoform X1"
                     /calculated_mol_wt=57266
     Region          70..491
                     /region_name="Tcp11"
                     /note="T-complex protein 11; pfam05794"
                     /db_xref="CDD:461743"
     CDS             1..512
                     /gene="TCP11L2"
                     /coded_by="XM_054071143.1:296..1834"
                     /db_xref="GeneID:104063469"
ORIGIN      
        1 mplnddqnsd sdssrlsest asssdseysr qsfnsdsssk psspasaspp kavtfdelma
       61 aaknlsdltl aheiavnanf cikkedlpqn slagrvkqiv hkafwdvles elnedppeye
      121 haiklfeeik eillsfltpg anrmqnqice vldtdlirqq aehnavdihg lanyiintmg
      181 klcapirddd ikqlkatdni vellrqifrv ldlmkmdman ytiqklrpyl qhnlvdyera
      241 kfqeileetp saldlttewi kesiedelss ipdesssspg adssskptis pvlvlnnsyl
      301 kllqwdyrkt ipetlitdeg rlqelkekln qlkiiacvcl itnnmvgpai vdvpdfadel
      361 kricvplled mnkktfdlke alnaigvqic nkvnrslter glptlnaemq snlmgqiahi
      421 veennpissl idkriqffmr sllalpsfqm rmpampggls vvqtemelvg sqyasivnfn
      481 kkvygpfyas ifrkllfpem avgkaetetv an
//
LOCUS       XP_053927126             512 aa            linear   VRT 09-MAR-2023
DEFINITION  T-complex protein 11-like protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053927126
VERSION     XP_053927126.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071151.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..512
                     /product="T-complex protein 11-like protein 2 isoform X1"
                     /calculated_mol_wt=57266
     Region          70..491
                     /region_name="Tcp11"
                     /note="T-complex protein 11; pfam05794"
                     /db_xref="CDD:461743"
     CDS             1..512
                     /gene="TCP11L2"
                     /coded_by="XM_054071151.1:276..1814"
                     /db_xref="GeneID:104063469"
ORIGIN      
        1 mplnddqnsd sdssrlsest asssdseysr qsfnsdsssk psspasaspp kavtfdelma
       61 aaknlsdltl aheiavnanf cikkedlpqn slagrvkqiv hkafwdvles elnedppeye
      121 haiklfeeik eillsfltpg anrmqnqice vldtdlirqq aehnavdihg lanyiintmg
      181 klcapirddd ikqlkatdni vellrqifrv ldlmkmdman ytiqklrpyl qhnlvdyera
      241 kfqeileetp saldlttewi kesiedelss ipdesssspg adssskptis pvlvlnnsyl
      301 kllqwdyrkt ipetlitdeg rlqelkekln qlkiiacvcl itnnmvgpai vdvpdfadel
      361 kricvplled mnkktfdlke alnaigvqic nkvnrslter glptlnaemq snlmgqiahi
      421 veennpissl idkriqffmr sllalpsfqm rmpampggls vvqtemelvg sqyasivnfn
      481 kkvygpfyas ifrkllfpem avgkaetetv an
//
LOCUS       XP_053927136             512 aa            linear   VRT 09-MAR-2023
DEFINITION  T-complex protein 11-like protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053927136
VERSION     XP_053927136.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071161.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..512
                     /product="T-complex protein 11-like protein 2 isoform X1"
                     /calculated_mol_wt=57266
     Region          70..491
                     /region_name="Tcp11"
                     /note="T-complex protein 11; pfam05794"
                     /db_xref="CDD:461743"
     CDS             1..512
                     /gene="TCP11L2"
                     /coded_by="XM_054071161.1:58..1596"
                     /db_xref="GeneID:104063469"
ORIGIN      
        1 mplnddqnsd sdssrlsest asssdseysr qsfnsdsssk psspasaspp kavtfdelma
       61 aaknlsdltl aheiavnanf cikkedlpqn slagrvkqiv hkafwdvles elnedppeye
      121 haiklfeeik eillsfltpg anrmqnqice vldtdlirqq aehnavdihg lanyiintmg
      181 klcapirddd ikqlkatdni vellrqifrv ldlmkmdman ytiqklrpyl qhnlvdyera
      241 kfqeileetp saldlttewi kesiedelss ipdesssspg adssskptis pvlvlnnsyl
      301 kllqwdyrkt ipetlitdeg rlqelkekln qlkiiacvcl itnnmvgpai vdvpdfadel
      361 kricvplled mnkktfdlke alnaigvqic nkvnrslter glptlnaemq snlmgqiahi
      421 veennpissl idkriqffmr sllalpsfqm rmpampggls vvqtemelvg sqyasivnfn
      481 kkvygpfyas ifrkllfpem avgkaetetv an
//
LOCUS       XP_053927144             511 aa            linear   VRT 09-MAR-2023
DEFINITION  T-complex protein 11-like protein 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053927144
VERSION     XP_053927144.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071169.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..511
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..511
                     /product="T-complex protein 11-like protein 2 isoform X2"
                     /calculated_mol_wt=57195
     Region          69..490
                     /region_name="Tcp11"
                     /note="T-complex protein 11; pfam05794"
                     /db_xref="CDD:461743"
     CDS             1..511
                     /gene="TCP11L2"
                     /coded_by="XM_054071169.1:340..1875"
                     /db_xref="GeneID:104063469"
ORIGIN      
        1 mplnddqnsd sdssrlsest asssdseysr qsfnsdsssk psspassppk avtfdelmaa
       61 aknlsdltla heiavnanfc ikkedlpqns lagrvkqivh kafwdvlese lnedppeyeh
      121 aiklfeeike illsfltpga nrmqnqicev ldtdlirqqa ehnavdihgl anyiintmgk
      181 lcapirdddi kqlkatdniv ellrqifrvl dlmkmdmany tiqklrpylq hnlvdyerak
      241 fqeileetps aldlttewik esiedelssi pdesssspga dssskptisp vlvlnnsylk
      301 llqwdyrkti petlitdegr lqelkeklnq lkiiacvcli tnnmvgpaiv dvpdfadelk
      361 ricvplledm nkktfdlkea lnaigvqicn kvnrslterg lptlnaemqs nlmgqiahiv
      421 eennpissli dkriqffmrs llalpsfqmr mpampgglsv vqtemelvgs qyasivnfnk
      481 kvygpfyasi frkllfpema vgkaetetva n
//
LOCUS       XP_053927152             454 aa            linear   VRT 09-MAR-2023
DEFINITION  T-complex protein 11-like protein 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053927152
VERSION     XP_053927152.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071177.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..454
                     /product="T-complex protein 11-like protein 2 isoform X3"
                     /calculated_mol_wt=51164
     Region          12..433
                     /region_name="Tcp11"
                     /note="T-complex protein 11; pfam05794"
                     /db_xref="CDD:461743"
     CDS             1..454
                     /gene="TCP11L2"
                     /coded_by="XM_054071177.1:306..1670"
                     /db_xref="GeneID:104063469"
ORIGIN      
        1 maaaknlsdl tlaheiavna nfcikkedlp qnslagrvkq ivhkafwdvl eselnedppe
       61 yehaiklfee ikeillsflt pganrmqnqi cevldtdlir qqaehnavdi hglanyiint
      121 mgklcapird ddikqlkatd nivellrqif rvldlmkmdm anytiqklrp ylqhnlvdye
      181 rakfqeilee tpsaldltte wikesiedel ssipdessss pgadssskpt ispvlvlnns
      241 ylkllqwdyr ktipetlitd egrlqelkek lnqlkiiacv clitnnmvgp aivdvpdfad
      301 elkricvpll edmnkktfdl kealnaigvq icnkvnrslt erglptlnae mqsnlmgqia
      361 hiveennpis slidkriqff mrsllalpsf qmrmpampgg lsvvqtemel vgsqyasivn
      421 fnkkvygpfy asifrkllfp emavgkaete tvan
//
LOCUS       XP_053927168             562 aa            linear   VRT 09-MAR-2023
DEFINITION  cytoskeleton-associated protein 4 [Cuculus canorus].
ACCESSION   XP_053927168
VERSION     XP_053927168.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071193.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..562
                     /product="cytoskeleton-associated protein 4"
                     /calculated_mol_wt=62348
     Region          <86..380
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          <307..>551
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..562
                     /gene="CKAP4"
                     /coded_by="XM_054071193.1:1..1689"
                     /db_xref="GeneID:104063474"
ORIGIN      
        1 msaakhrgsk ggspsaaatt ergahpsgae epaakkaaap shgrgggraa gggggrsgag
       61 prrgwalllg aavmlgvavp ggwlvrqlre evgrsarere dsgrqrqela atldavvqkv
      121 rslqatfgef esmmkiaqqk qevtekavkq geseinrise vlqklqneil kdlsdgihmv
      181 kdarerdfts lentveerlt eltksindni avftevqqrs qdeinnmkak vdsleeadvy
      241 khdikvlkda fdemqasiki kekdietlks tmesmesdvy tevkelvnlk qehekfkeaa
      301 dtehlslkal qekvlraeds imqlpsdvkr lsedllqvka dlnkweenel frkaletfgk
      361 nseglesrlr hiedrleslt fvasqnsekl esflskeaey knklstleqs itafqgisdm
      421 ditsvtdilk nlresqtsly nevenlkrsi ddlpssgplq dvqnqintll dqgnhqtgqa
      481 hsqgylekls svegsvdelr ssvsqvdsdl kmirtavdsl vsysvkietn ennlesvkss
      541 vddlrndler lfvkvekihe kv
//
LOCUS       XP_053927181             987 aa            linear   VRT 09-MAR-2023
DEFINITION  ephrin type-A receptor 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053927181
VERSION     XP_053927181.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071206.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..987
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..987
                     /product="ephrin type-A receptor 3 isoform X1"
                     /calculated_mol_wt=110239
     Region          32..204
                     /region_name="EphR_LBD_A3"
                     /note="Ligand Binding Domain of Ephrin type-A Receptor 3;
                     cd10481"
                     /db_xref="CDD:198449"
     Site            order(56,58..62,69..70,72,74,105,107,112..113,155,
                     159..160,163..165,192..194,196)
                     /site_type="other"
                     /note="ephrin binding site [polypeptide binding]"
                     /db_xref="CDD:198449"
     Region          <326..>547
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          440..531
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(440,504,519)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(520..521,523..524)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          558..622
                     /region_name="EphA2_TM"
                     /note="Ephrin type-A receptor 2 transmembrane domain;
                     pfam14575"
                     /db_xref="CDD:464211"
     Region          620..886
                     /region_name="PTKc_EphR_A"
                     /note="Catalytic domain of the Protein Tyrosine Kinases,
                     Class EphA Ephrin Receptors; cd05066"
                     /db_xref="CDD:270651"
     Site            order(631,633..635,639,655,657,703..704,706,750,754..755,
                     757,768,787..791,800,834)
                     /site_type="active"
                     /db_xref="CDD:270651"
     Site            order(631..635,639,655,657,703..706,709..710,754..755,757,
                     768)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270651"
     Site            order(750,754,787..791,800,834)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270651"
     Site            767..793
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270651"
     Region          916..978
                     /region_name="SAM_EPH-A3"
                     /note="SAM domain of EPH-A3 subfamily of tyrosine kinase
                     receptors; cd09544"
                     /db_xref="CDD:188943"
     CDS             1..987
                     /gene="LOC104056012"
                     /coded_by="XM_054071206.1:114..3077"
                     /db_xref="GeneID:104056012"
ORIGIN      
        1 mdprrlllpl lllllraalg aagrlsarpg nevnlldskt iqgelgwisy pshgweeisg
       61 vdehytpirt yqvcnvmdhs qnnwlrtnwi prnsaqkiyv elkftlrdcn siplvlgtck
      121 etfnlyymes dddhsvkfre hqftkidtia adesftqmdl gdrilklnte vrevgpvsrk
      181 gfylafqdvg acvalvsvrv yfkkcpftvk nlamfpdtvp mdsqslvevr gscvnhskee
      241 eppkmycste gewlvpigkc lcnagyeerg facqacrpgf ykasagnlkc akcpphssty
      301 edaslncrce knyfrsekdp psmactrpps aprnvisnin etsvildwsw pldtggrkdv
      361 tfniickkcg gnikicepcs dnvrflprqt glmnttvtvv dllahtnytf eidavngvsd
      421 lstlsrqfaa vsittnqaap spitvirkdr tsrnsvslsw qepehpngii ldyevkyyek
      481 qeqetsytil rakgtnvtis glkpdttyvf qirartaagy gtnsrkfefe tspdsfsiss
      541 ensqvvmiai saavaiillt vvvyiligrf cgykkskhgt dekrlhfgng qlklpglrty
      601 vdphtyedps qavhefakel dasnisidkv vgagefgevc sgrlklpskk eisvaiktlk
      661 vgytekqrrd flgeasimgq fdhpniirle gvvtkskpvm ivteymengs ldsflrkhda
      721 qftviqlvgm lrgiasgmky lsdmgyvhrd laarnilins nlvckvsdfg lsrvleddpe
      781 aayttrggki pirwtspeai ayrkftsasd awsygivlwe vmsygerpyw emsnqdvika
      841 vdegyrlppp mdcpaalyql mldcwqkdrn nrpkfeqivs ildklirnps slkiitnaaa
      901 rpsnllldqs nidisafrtt gdwlngfrtg qckdiftgve ysscdtiaki stddmkkvgv
      961 tvvapqkkvv ssikavetht knspvpv
//
LOCUS       XP_053927190             986 aa            linear   VRT 09-MAR-2023
DEFINITION  ephrin type-A receptor 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053927190
VERSION     XP_053927190.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071215.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..986
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..986
                     /product="ephrin type-A receptor 3 isoform X2"
                     /calculated_mol_wt=110110
     Region          32..204
                     /region_name="EphR_LBD_A3"
                     /note="Ligand Binding Domain of Ephrin type-A Receptor 3;
                     cd10481"
                     /db_xref="CDD:198449"
     Site            order(56,58..62,69..70,72,74,105,107,112..113,155,
                     159..160,163..165,192..194,196)
                     /site_type="other"
                     /note="ephrin binding site [polypeptide binding]"
                     /db_xref="CDD:198449"
     Region          <326..>546
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          440..530
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(440,503,518)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(519..520,522..523)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          557..621
                     /region_name="EphA2_TM"
                     /note="Ephrin type-A receptor 2 transmembrane domain;
                     pfam14575"
                     /db_xref="CDD:464211"
     Region          619..885
                     /region_name="PTKc_EphR_A"
                     /note="Catalytic domain of the Protein Tyrosine Kinases,
                     Class EphA Ephrin Receptors; cd05066"
                     /db_xref="CDD:270651"
     Site            order(630,632..634,638,654,656,702..703,705,749,753..754,
                     756,767,786..790,799,833)
                     /site_type="active"
                     /db_xref="CDD:270651"
     Site            order(630..634,638,654,656,702..705,708..709,753..754,756,
                     767)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270651"
     Site            order(749,753,786..790,799,833)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270651"
     Site            766..792
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270651"
     Region          915..977
                     /region_name="SAM_EPH-A3"
                     /note="SAM domain of EPH-A3 subfamily of tyrosine kinase
                     receptors; cd09544"
                     /db_xref="CDD:188943"
     CDS             1..986
                     /gene="LOC104056012"
                     /coded_by="XM_054071215.1:114..3074"
                     /db_xref="GeneID:104056012"
ORIGIN      
        1 mdprrlllpl lllllraalg aagrlsarpg nevnlldskt iqgelgwisy pshgweeisg
       61 vdehytpirt yqvcnvmdhs qnnwlrtnwi prnsaqkiyv elkftlrdcn siplvlgtck
      121 etfnlyymes dddhsvkfre hqftkidtia adesftqmdl gdrilklnte vrevgpvsrk
      181 gfylafqdvg acvalvsvrv yfkkcpftvk nlamfpdtvp mdsqslvevr gscvnhskee
      241 eppkmycste gewlvpigkc lcnagyeerg facqacrpgf ykasagnlkc akcpphssty
      301 edaslncrce knyfrsekdp psmactrpps aprnvisnin etsvildwsw pldtggrkdv
      361 tfniickkcg gnikicepcs dnvrflprqt glmnttvtvv dllahtnytf eidavngvsd
      421 lstlsrqfaa vsittnqaap spitvirkdr tsrnsvslsw qepehpngii ldyevkyyek
      481 eqetsytilr akgtnvtisg lkpdttyvfq irartaagyg tnsrkfefet spdsfsisse
      541 nsqvvmiais aavaiilltv vvyiligrfc gykkskhgtd ekrlhfgngq lklpglrtyv
      601 dphtyedpsq avhefakeld asnisidkvv gagefgevcs grlklpskke isvaiktlkv
      661 gytekqrrdf lgeasimgqf dhpniirleg vvtkskpvmi vteymengsl dsflrkhdaq
      721 ftviqlvgml rgiasgmkyl sdmgyvhrdl aarnilinsn lvckvsdfgl srvleddpea
      781 ayttrggkip irwtspeaia yrkftsasda wsygivlwev msygerpywe msnqdvikav
      841 degyrlpppm dcpaalyqlm ldcwqkdrnn rpkfeqivsi ldklirnpss lkiitnaaar
      901 psnllldqsn idisafrttg dwlngfrtgq ckdiftgvey sscdtiakis tddmkkvgvt
      961 vvapqkkvvs sikavethtk nspvpv
//
LOCUS       XP_053927200            1895 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 131 [Cuculus canorus].
ACCESSION   XP_053927200
VERSION     XP_053927200.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071225.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1895
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1895
                     /product="transmembrane protein 131"
                     /calculated_mol_wt=207436
     Region          112..195
                     /region_name="TMEM131_like_N"
                     /note="Transmembrane protein 131-like N-terminal;
                     pfam12371"
                     /db_xref="CDD:463553"
     Region          346..>1154
                     /region_name="TMEM131_like"
                     /note="Transmembrane protein 131-like; pfam19532"
                     /db_xref="CDD:437364"
     CDS             1..1895
                     /gene="TMEM131"
                     /coded_by="XM_054071225.1:90..5777"
                     /db_xref="GeneID:104056706"
ORIGIN      
        1 mtarreaaga aggccccfss tnttttgspf prgagscaaa avrrgaalrf allvllsfyt
       61 araekeafiq sdgiiemlrf degdllqtet tiglssyqqk svslyrgncr plrfeppmld
      121 fheqpvgmpk mekvylhnps seetitlvsi sattshfhas ffqnrkilpg gntsfdvvfl
      181 arvvgnvent lfintsnhgv ftyqvfgigv pnpyrlrpfi garvpvnssf spiinihnph
      241 seplqvvemy ssggdlhlel ptgqqggtrk lweippyetk gvmrasfssr eadnhtafir
      301 iktnasdste fiilpvevev ttapgiysst emldfgtlrt qdlpkilnlh llnsgtkdvp
      361 itsvrptpqn eaitvhfkpv tlkaseskyt kvasisfdas kakkasqssg kitvkakeks
      421 yskleipyqa evldgylgfd haatlfhird saadsverpi yltntfsfav lihdvvlpee
      481 akpmfkvqnf skpvlippne sryiftlhfm pstssvhidn nillitnask fhlpvraytg
      541 fldyfvlppk teerfidfgi lsateaasil fvvinsnpie lavrswhiig dglsielltt
      601 ekgnrttiia nhhelqnasa sdqssvilas gyyavfrvkl iakelegihd gavqittdye
      661 iltipvkavi avgsltcspk hiflppsfpg kvvhqslnim nsfsqkvklq hirslsedvr
      721 fyykrlrsnk ddlepgkksk ianiyfdpsl ecgdhcyvgl pfvskseskv qhsiamqedt
      781 wdsdwdlhen lfkewtdike ssshrlnaff evdtdlqkdv rlkvtaemtw psilssprhl
      841 gfpltntnss seeeiflenp advpvyvqfl pvalysnpst fvdkllerfn lskpanfnlr
      901 tlefqvfrnc vqplqstmgf tkglarhsvl slilkpgerk svkvkftpvl nktvsslivi
      961 rnnltvidai mvqgqgttes lkvagkppgp gsslrfkite allkdcsekm kykepnftlr
     1021 rtfkventgq lqinvktmei sgytcegygf kvvnchefal sanaskdivi lftpdftasr
     1081 virelkfiti ggseflfvln aslpyhmlat caealprpnw elalyiiisg imsvlfllvi
     1141 gtayleaqgi wepfrrrlsf easnppfdmg rpldlrrivg issdgnlnal gsdsnhnssr
     1201 giygassssr ssagnhkqyn atahlhsnrn apdveniksk ssssipnrts aqaasvqsvn
     1261 ragpftldsg ataqthaagk rakgtrqnqq ltqqpapalt eqplqqppas gpqqqeqqte
     1321 salpqlplps pphaecegsr rhssedsdlt glietmekdf dhpespspdv fteqppspla
     1381 knkgkgktlq rkakpqkkre ekdrrgkgkq qedelkdsla dddsssttte tsnpdtepll
     1441 keepekqkgk vipekpenei vpvkqktkkl lasikkenpv dvktsslelp ytppleikqr
     1501 ktfpskmstq hlltngsksr nipktrgpns kltdsrpsvl akflpsssgq elgntssseg
     1561 ekdspppewd svplhkagss tdnlyklslq tlnadaflkq rqpsptpasp spppppasla
     1621 fgprggtyss ivnsscsnet kskqpngtkh klakaaslpg rngnptfaav aagydkspgg
     1681 gglpkvspsk tevssnisms htavdsdgsd ssglwspisn psspdftpln sfsafghsfn
     1741 ltgevfsklg larsaygqdv qrnwtefnnv pssiwdpsat dsvpswptss sspthttasi
     1801 lgnpglwstt pfsssiwssn lnsglpfttp tnalsgidlm gcenssaapp ppttatvanp
     1861 aedigqtynp wriwsptigr rssdpwsnsh yphen
//
LOCUS       XP_053927210             476 aa            linear   VRT 09-MAR-2023
DEFINITION  mothers against decapentaplegic homolog 9 [Cuculus canorus].
ACCESSION   XP_053927210
VERSION     XP_053927210.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071235.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..476
                     /product="mothers against decapentaplegic homolog 9"
                     /calculated_mol_wt=53357
     Region          13..136
                     /region_name="MH1_SMAD_1_5_9"
                     /note="N-terminal Mad Homology 1 (MH1) domain in SMAD1,
                     SMAD5 and SMAD9 (also known as SMAD8); cd10490"
                     /db_xref="CDD:199814"
     Site            order(36,40,74..75,78..82,85,104)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:199814"
     Site            order(68,113,125,130)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:199814"
     Region          276..476
                     /region_name="MH2_SMAD_1_5_9"
                     /note="C-terminal Mad Homology 2 (MH2) domain in SMAD1,
                     SMAD5 and SMAD9; cd10497"
                     /db_xref="CDD:199822"
     Site            order(280,291,296..297,299,310..314,319,323..324,326,
                     328..329,335..336,338..340,343,362,412,415,418,422,424,
                     428..430,435,437,441,446,448,450,452,455..456,458..459,
                     462..463,467..470,472..476)
                     /site_type="other"
                     /note="trimer interface [polypeptide binding]"
                     /db_xref="CDD:199822"
     CDS             1..476
                     /gene="SMAD9"
                     /coded_by="XM_054071235.1:346..1776"
                     /db_xref="GeneID:104066123"
ORIGIN      
        1 mhsstpissl fsftspavkr llgwkqgdee ekwaekavds lvkklkkkkg ameelerals
       61 cpgqpskcvt iprsldgrlq vshrkglphv iycrvwrwpd lqshhelkpl eccefpfgsk
      121 qkevcinpyh yrrvetpvlp pvlvprhsef nphlsllakf rntslhsepl mphnatypds
      181 fqhpqctpfp sspshmfsqs pnsisypnsp gsssgpgspy qitvetpppp yhareppgih
      241 ngrsmdaiae sqlvlslpng sksadgeaen frpvcyeepq hwcsvayyel nnrvgetfqa
      301 ssrsilidgf tdpsnnknrf clgllsnvnr nstientrrh igkgvhlyyv ggevyaecvs
      361 dssifvqsrn cnyqhgfhpa tvckipsgcs lkifnnqlfa qllaqsvnhg fevvyeltkm
      421 ctirmsfvkg wgaeyhrqdv tstpcwieih lhgplqwldk vltqmgsphn pissvs
//
LOCUS       XP_053927222             851 aa            linear   VRT 09-MAR-2023
DEFINITION  ras GTPase-activating protein 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053927222
VERSION     XP_053927222.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071247.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..851
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..851
                     /product="ras GTPase-activating protein 3 isoform X1"
                     /calculated_mol_wt=97931
     Region          13..133
                     /region_name="C2A_RasA2_RasA3"
                     /note="C2 domain first repeat present in RasA2 and RasA3;
                     cd08401"
                     /db_xref="CDD:176046"
     Site            order(35,82,84,89)
                     /site_type="other"
                     /note="putative Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176046"
     Region          146..288
                     /region_name="C2B_RasA3"
                     /note="C2 domain second repeat present in RAS p21 protein
                     activator 3 (RasA3); cd04010"
                     /db_xref="CDD:175977"
     Site            order(153,165,217,219,241,243)
                     /site_type="other"
                     /note="putative Ca2+ binding pocket [ion binding]"
                     /db_xref="CDD:175977"
     Region          297..565
                     /region_name="RasGAP_RASA3"
                     /note="Ras-GTPase Activating Domain of RASA3; cd05134"
                     /db_xref="CDD:213336"
     Site            order(331,367,369,371..372,374,377,381,476,484..485,
                     488..489,492,513,516..517,520,524,526,534..535)
                     /site_type="other"
                     /note="putative RAS interface [polypeptide binding]"
                     /db_xref="CDD:213336"
     Region          562..703
                     /region_name="PH-like"
                     /note="Pleckstrin homology-like domain; cl17171"
                     /db_xref="CDD:473070"
     Region          696..731
                     /region_name="BTK"
                     /note="Bruton's tyrosine kinase Cys-rich motif;
                     smart00107"
                     /db_xref="CDD:128417"
     CDS             1..851
                     /gene="RASA3"
                     /coded_by="XM_054071247.1:128..2683"
                     /db_xref="GeneID:104056623"
ORIGIN      
        1 maveeeglrv fqsvrikige aknlptypgp nkmrdcyctv nldqeevfrt kivekslcpf
       61 ygedfyceip rtfrhlsfyi fdrdvfrrds iigkvaiqke dlqkyhnrdt wfqlqhvdad
      121 sevqgkvhle lrlsevitdt gvvchklatr vlecqglpiv ngqcdpyatv tlagpsrsea
      181 kktkvkkktn nphfdevfyf evtrhssykk shfdiedvde vdkmeirvdl wnasnlkfgd
      241 eflgelrlpl kflrqsssye awyflqprdn gnkslkpddl gslrlnvvyt edhvfssdyy
      301 splrdlllks advepvsasa ahilgevcre kqeaaiplvr lflhygrivp fisaianaev
      361 krtqdpntif rgnsltskci detmklagmh ylqvtlkpii deicqvhkpc eidpvklkdg
      421 enlennrenl rqyvdriftv itksgvscpt vmcdiffslr esaakrfqgd ldvrytavss
      481 fiflrffapa ilspnlfqlt phhpdpqtsr tltlisktiq tlgslsksks anfkesymat
      541 fydyfneqky adavknfldl isssgrrdhk sieqpillke gtlkltvkkv dgnsscrfmi
      601 kraqgrkrfg mknfkkrwfr ltnheftyqk skgdhplcsi pienilaver leeesfkmkn
      661 mfqviqperr vlyiqanncv eakdwidilt kvsqcnkkrl tvyhpsayln ghwlcckata
      721 dntpgctpct gglpaniqld idgdreteri yslfnlympk lekmqeacgs ksvydgpeee
      781 eystfiiddp ketyktlkli iegvatleqe haqykrdkfk ktkygsqehp igdksfqtyi
      841 rqqseisahs i
//
LOCUS       XP_053927231             835 aa            linear   VRT 09-MAR-2023
DEFINITION  ras GTPase-activating protein 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053927231
VERSION     XP_053927231.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071256.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..835
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..835
                     /product="ras GTPase-activating protein 3 isoform X2"
                     /calculated_mol_wt=96200
     Region          13..133
                     /region_name="C2A_RasA2_RasA3"
                     /note="C2 domain first repeat present in RasA2 and RasA3;
                     cd08401"
                     /db_xref="CDD:176046"
     Site            order(35,82,84,89)
                     /site_type="other"
                     /note="putative Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176046"
     Region          146..288
                     /region_name="C2B_RasA3"
                     /note="C2 domain second repeat present in RAS p21 protein
                     activator 3 (RasA3); cd04010"
                     /db_xref="CDD:175977"
     Site            order(153,165,217,219,241,243)
                     /site_type="other"
                     /note="putative Ca2+ binding pocket [ion binding]"
                     /db_xref="CDD:175977"
     Region          297..565
                     /region_name="RasGAP_RASA3"
                     /note="Ras-GTPase Activating Domain of RASA3; cd05134"
                     /db_xref="CDD:213336"
     Site            order(331,367,369,371..372,374,377,381,476,484..485,
                     488..489,492,513,516..517,520,524,526,534..535)
                     /site_type="other"
                     /note="putative RAS interface [polypeptide binding]"
                     /db_xref="CDD:213336"
     Region          562..687
                     /region_name="PH_GAP1_mammal-like"
                     /note="GAP1(IP4BP) pleckstrin homology (PH) domain;
                     cd13371"
                     /db_xref="CDD:241522"
     Region          680..715
                     /region_name="BTK"
                     /note="Bruton's tyrosine kinase Cys-rich motif;
                     smart00107"
                     /db_xref="CDD:128417"
     CDS             1..835
                     /gene="RASA3"
                     /coded_by="XM_054071256.1:127..2634"
                     /db_xref="GeneID:104056623"
ORIGIN      
        1 maveeeglrv fqsvrikige aknlptypgp nkmrdcyctv nldqeevfrt kivekslcpf
       61 ygedfyceip rtfrhlsfyi fdrdvfrrds iigkvaiqke dlqkyhnrdt wfqlqhvdad
      121 sevqgkvhle lrlsevitdt gvvchklatr vlecqglpiv ngqcdpyatv tlagpsrsea
      181 kktkvkkktn nphfdevfyf evtrhssykk shfdiedvde vdkmeirvdl wnasnlkfgd
      241 eflgelrlpl kflrqsssye awyflqprdn gnkslkpddl gslrlnvvyt edhvfssdyy
      301 splrdlllks advepvsasa ahilgevcre kqeaaiplvr lflhygrivp fisaianaev
      361 krtqdpntif rgnsltskci detmklagmh ylqvtlkpii deicqvhkpc eidpvklkdg
      421 enlennrenl rqyvdriftv itksgvscpt vmcdiffslr esaakrfqgd ldvrytavss
      481 fiflrffapa ilspnlfqlt phhpdpqtsr tltlisktiq tlgslsksks anfkesymat
      541 fydyfneqky adavknfldl isssgrrdhk sieqpillke gfmikraqgr krfgmknfkk
      601 rwfrltnhef tyqkskgdhp lcsipienil averleeesf kmknmfqviq perrvlyiqa
      661 nncveakdwi diltkvsqcn kkrltvyhps aylnghwlcc katadntpgc tpctgglpan
      721 iqldidgdre teriyslfnl ympklekmqe acgsksvydg peeeeystfi iddpketykt
      781 lkliiegvat leqehaqykr dkfkktkygs qehpigdksf qtyirqqsei sahsi
//
LOCUS       XP_053927244            1914 aa            linear   VRT 09-MAR-2023
DEFINITION  UPF0606 protein KIAA1549 homolog isoform X1 [Cuculus canorus].
ACCESSION   XP_053927244
VERSION     XP_053927244.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071269.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1914
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1914
                     /product="UPF0606 protein KIAA1549 homolog isoform X1"
                     /calculated_mol_wt=207294
     Region          1027..1694
                     /region_name="DUF3827"
                     /note="Domain of unknown function (DUF3827); pfam12877"
                     /db_xref="CDD:463737"
     CDS             1..1914
                     /gene="KIAA1549"
                     /coded_by="XM_054071269.1:399..6143"
                     /db_xref="GeneID:104058934"
ORIGIN      
        1 megmtrsava aarwrpalpa llplllavpa lrgapaader sleqqnsslf smnskvhqsi
       61 sasrteitsa ksilesqesn flqtilssvt tpsdvtlfnq eemvrisegr stplvdvsis
      121 sneaflsdef insfpkaqwt pplksfavlt dhhsvntvep prevletvll tpslsalfsp
      181 yiiskttqqk tplsavpern ntltelkpfv lhsemltvsr dlslyppnta myftsipsdt
      241 gvavqenina slialpfgaa segsplylkl mdknapvipd ateqssdlyg dvygdetsrv
      301 setlslrtyp spsiplampa saasaepalf pislppasfp lhsadvstds nmvlnaslft
      361 hefssttpnl passektsqs elvsefmspv pftrsysscl ycdsvsllpe agfspehdvg
      421 sgdyvetlsi kasevqgitp fttiitdgyd leeptpeifd tsfpsrpvvs fssrlaeipd
      481 ssmfllssln saldtgtpit isssyhqlpg gtslnisavq fslpvletvs ltpsihveip
      541 gattflfdst filnepvasf avsrttlles pelmpsksvf lldktstkee pssntsdfpp
      601 sllstpflie psylslssvm ldsysvmqsd lstflpqisl tgtavlsedv sscdfavivs
      661 satnaevsqf plsqtsyfys nassvpdahv pemrptsdfp sessvfleat svlpvgsevi
      721 ftsavtgats qlepslstsh svvptlvlps sdtrsvtssi llsetnlvsl fttfpatpvl
      781 nvsssllsta lasdedigat vnptllltsr segsahtsyp padpgnqtsh adtssvmafp
      841 taslfvttsf sptwfpptss lptgyevpag ssitaatdvs tisttvsttt stsatgshgt
      901 taavtpgtfs stplvtttpt epviitsavt atrqpyvcdi tvpdaylvta vlaqravlqn
      961 vsesirevlr vqfrrtveie vykispkfaf lvtsgpfvyt avavinvlvn ssllrgeapv
     1021 ilslhpsftv pdnrfqvqtv lqfvprnmdv gfcnfsqrie kgltmafmev skhqefynft
     1081 vqilnitlsr pgiafrqgpv sivfairdry gflngsrvse qlrnlsvvef sfylgfpvqq
     1141 iaepfhypkl nvshlmkssw vrtvllgvid qriqeevfqa emerklahll nealvrgriw
     1201 rrasfagsnv vqivnvsrlv gvdnpveliy fvedqdgerl salkcsdlmn rvdiqraaii
     1261 lgyriegtva qpveklkdst tesqnsnlwi ivgvavpvav vlliviilyw klcrtdklef
     1321 qpdtisniqq rqklqapsvk gfdfakqhlg qhnkddvlii hepaplpgpi kdttpsengd
     1381 vpspksktss kpsktarprg rvspsdadst aseqssgret geetarpstv anegkprrav
     1441 kkgppqtssg neqhssasif ehvdrmsrss dasrrvpski qliamqpmaa ppvqnsvlsd
     1501 rvaetnkink eiqtalrhks eiehhrnkir lrakrkghye fpvvddvvvv dskeqhriyr
     1561 kaqmqidkil dpggsvpsvf ieprkssrak rspkqrrrhq ingspidaek drlittdsdg
     1621 tykrppgvnn sayisdpdlp sepqisssad lgkfpglpsh pvsqyvppqp sieearqtmh
     1681 sllddafalv apssqaanst avtppgvsag qpryvefgmt pptapgllqr qnfgpgflqp
     1741 aelmhpdqqp pevqyssrgi yseempsvar prpvgstags qiqhltqvgi asriggqqve
     1801 ipsgraghgq pggpgwpqcr gedeyarrda thmhghqeys sspvfqmprt sarqpsappa
     1861 qlphnslqgq glcyttsste dlqpghssas likaireell rlsqkqttvq nfhs
//
LOCUS       XP_053927255            1827 aa            linear   VRT 09-MAR-2023
DEFINITION  UPF0606 protein KIAA1549 homolog isoform X2 [Cuculus canorus].
ACCESSION   XP_053927255
VERSION     XP_053927255.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071280.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1827
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1827
                     /product="UPF0606 protein KIAA1549 homolog isoform X2"
                     /calculated_mol_wt=197876
     Region          1027..1694
                     /region_name="DUF3827"
                     /note="Domain of unknown function (DUF3827); pfam12877"
                     /db_xref="CDD:463737"
     CDS             1..1827
                     /gene="KIAA1549"
                     /coded_by="XM_054071280.1:399..5882"
                     /db_xref="GeneID:104058934"
ORIGIN      
        1 megmtrsava aarwrpalpa llplllavpa lrgapaader sleqqnsslf smnskvhqsi
       61 sasrteitsa ksilesqesn flqtilssvt tpsdvtlfnq eemvrisegr stplvdvsis
      121 sneaflsdef insfpkaqwt pplksfavlt dhhsvntvep prevletvll tpslsalfsp
      181 yiiskttqqk tplsavpern ntltelkpfv lhsemltvsr dlslyppnta myftsipsdt
      241 gvavqenina slialpfgaa segsplylkl mdknapvipd ateqssdlyg dvygdetsrv
      301 setlslrtyp spsiplampa saasaepalf pislppasfp lhsadvstds nmvlnaslft
      361 hefssttpnl passektsqs elvsefmspv pftrsysscl ycdsvsllpe agfspehdvg
      421 sgdyvetlsi kasevqgitp fttiitdgyd leeptpeifd tsfpsrpvvs fssrlaeipd
      481 ssmfllssln saldtgtpit isssyhqlpg gtslnisavq fslpvletvs ltpsihveip
      541 gattflfdst filnepvasf avsrttlles pelmpsksvf lldktstkee pssntsdfpp
      601 sllstpflie psylslssvm ldsysvmqsd lstflpqisl tgtavlsedv sscdfavivs
      661 satnaevsqf plsqtsyfys nassvpdahv pemrptsdfp sessvfleat svlpvgsevi
      721 ftsavtgats qlepslstsh svvptlvlps sdtrsvtssi llsetnlvsl fttfpatpvl
      781 nvsssllsta lasdedigat vnptllltsr segsahtsyp padpgnqtsh adtssvmafp
      841 taslfvttsf sptwfpptss lptgyevpag ssitaatdvs tisttvsttt stsatgshgt
      901 taavtpgtfs stplvtttpt epviitsavt atrqpyvcdi tvpdaylvta vlaqravlqn
      961 vsesirevlr vqfrrtveie vykispkfaf lvtsgpfvyt avavinvlvn ssllrgeapv
     1021 ilslhpsftv pdnrfqvqtv lqfvprnmdv gfcnfsqrie kgltmafmev skhqefynft
     1081 vqilnitlsr pgiafrqgpv sivfairdry gflngsrvse qlrnlsvvef sfylgfpvqq
     1141 iaepfhypkl nvshlmkssw vrtvllgvid qriqeevfqa emerklahll nealvrgriw
     1201 rrasfagsnv vqivnvsrlv gvdnpveliy fvedqdgerl salkcsdlmn rvdiqraaii
     1261 lgyriegtva qpveklkdst tesqnsnlwi ivgvavpvav vlliviilyw klcrtdklef
     1321 qpdtisniqq rqklqapsvk gfdfakqhlg qhnkddvlii hepaplpgpi kdttpsengd
     1381 vpspksktss kpsktarprg rvspsdadst aseqssgret geetarpstv anegkprrav
     1441 kkgppqtssg neqhssasif ehvdrmsrss dasrrvpski qliamqpmaa ppvqnsvlsd
     1501 rvaetnkink eiqtalrhks eiehhrnkir lrakrkghye fpvvddvvvv dskeqhriyr
     1561 kaqmqidkil dpggsvpsvf ieprkssrak rspkqrrrhq ingspidaek drlittdsdg
     1621 tykrppgvnn sayisdpdlp sepqisssad lgkfpglpsh pvsqyvppqp sieearqtmh
     1681 sllddafalv apssqaanst avtppgvsag qpryvefgmt pptapgllqr qnfgpgflqp
     1741 aelmhpdqqp pevqyssrgi yseempsvar prpvgstadt yawtprifll tsipdaedfs
     1801 qaafgapcsa stqqpsgpgp llhhqfh
//
LOCUS       XP_053927266             788 aa            linear   VRT 09-MAR-2023
DEFINITION  tyrosine-protein phosphatase non-receptor type 12 [Cuculus
            canorus].
ACCESSION   XP_053927266
VERSION     XP_053927266.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071291.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..788
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..788
                     /product="tyrosine-protein phosphatase non-receptor type
                     12"
                     /calculated_mol_wt=88246
     Region          2..298
                     /region_name="PTPc-N12"
                     /note="catalytic domain of tyrosine-protein phosphatase
                     non-receptor type 12; cd14604"
                     /db_xref="CDD:350452"
     CDS             1..788
                     /gene="PTPN12"
                     /coded_by="XM_054071291.1:45..2411"
                     /db_xref="GeneID:104059680"
ORIGIN      
        1 msqeeilrkf ikrvqamkdt dhngednfas dfmrlrrlst kyrtekiypt atgekeenvk
       61 knrykdilpf dhsrvkltlk tppqdsdyin anfikgvhgp kayvatqgpl antvidfwrm
      121 iweynvaiiv macrefemgr kkcerywply geaavtfgpf rvsceaeqar tdyfirtlll
      181 efqnetrsvy qfhyvnwpdh dvpssfdsil dmislmreyq ehedvpicih csagcgrtga
      241 icaidytwnl lkagkipeef nvfnliqemr tqrhsavqtk eqyelvhrai aqlfekqlqk
      301 yencadwkia dgvdenntey avsssdaekq dspppkpprt rsclvegdak eeilqppepq
      361 pvppiltpsp psayptvttv wqdndryhpk pvlhmvsseh stdlnenynk stehsgkndp
      421 seraekrler nlsfeikkvp lqegprsfdg nsllnrghai kikpasscvt dksfkaqeqi
      481 sgdsfvdasq nssmecsvpq sstalipspe slqsqqvsdt pprpdrlpla ekghatwslh
      541 gperalrtsv sedvssdvlc hgvktlslvs nttiehpssd nvdhttitvr aplcftnplh
      601 sddsdtdemn fdeamsrsas nvstasatvs aatntenifa rkvlpmsiar qdltavtcsg
      661 dgkdadtcdd sspplpertp esfvlaseqs tpllkpvrta qsewsllrdq hlpeqavstg
      721 lkttspvlpd rpersnktpt dilpqtsfsg ssdtrgqise fpaevtdigf gnrcgkprgp
      781 reppsewt
//
LOCUS       XP_053927278            1202 aa            linear   VRT 09-MAR-2023
DEFINITION  phospholipid-transporting ATPase IH isoform X1 [Cuculus canorus].
ACCESSION   XP_053927278
VERSION     XP_053927278.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071303.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1202
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1202
                     /product="phospholipid-transporting ATPase IH isoform X1"
                     /calculated_mol_wt=137620
     Region          47..983
                     /region_name="P-type_ATPase_APLT_Dnf-like"
                     /note="Aminophospholipid translocases (APLTs), similar to
                     Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2,
                     -10D, -11B, -11C; cd02073"
                     /db_xref="CDD:319770"
     Site            order(414..416,553,576..578,640,687..689,798,801,804,825,
                     828)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:319770"
     Region          <891..>1100
                     /region_name="MelB"
                     /note="Na+/melibiose symporter or related transporter
                     [Carbohydrate transport and metabolism]; COG2211"
                     /db_xref="CDD:441813"
     CDS             1..1202
                     /gene="ATP11A"
                     /coded_by="XM_054071303.1:283..3891"
                     /db_xref="GeneID:104056665"
ORIGIN      
        1 mdcsllrtlv srycageenw vdsrtiyvgh repppgteay ipqrfpdnri vsskytfwnf
       61 ipknlfeqfr rianfyflii flvqliidtp tspvtsglpl lfvitvtaik qgyedwlrhk
      121 adnamnqcpv hfiqhgklvr kqsrklrvgd ivmvkedetf pcdliflsss rgdgtcfvtt
      181 asldgesshk tyyavqdtka fhseqeidal hatieceqpq pdlykfvgri nvyhdrnept
      241 arplgsenll lrgatlknte kifgvaiytg metkmalnyq aksqkrsave ksmnvflivy
      301 lciliskali ntvlkyvwqs epfrdepwyn qkteperkrh lflraftdfl afmvlfnyii
      361 pvsmyvtvem qkflgsyfla wdeemfdedt gegplvntsd lneelgqiey vftdktgtlt
      421 ennmefvecc igghvyvphv vcngqilhdc tgidmidssp ggsgkereel ffralclcht
      481 vqvkdddnvd glkknqfsrr sciyissspd evalvegiqr lgytylrlkd nfmeilnren
      541 klekfellev lsfdsvrrrm svivksstgd iflfckgads sifprvkegk ieqvrsrver
      601 naveglrtlc vaykkltake ygdvqkllqn aklalqdrek klaevyekie rdfillgata
      661 vedrlqekaa dtiealqkag ikvwvltgdk metaaatcya cklfrrntqi lelttkkiee
      721 qslhdvlfdl sktvlrhsgs ltrdtfsgls tdmqdyglii dgaalslimk prqdgssany
      781 relfleicrn csavlccrma plqkaqivkl iklsrehpit laigdgandv smileahvgi
      841 giigkegrqa arnsdyaipk fkhlkkmllv hghfyyvris elvqyffykn vcfifpqfly
      901 qffcgfsqqt lydtayltly nisftslpil lyglmeqhvs adtlkrepsl yrdvaknall
      961 rwrafiywtf lgvfdavvff fgayflfdnt iltsngqlmt tsthmvfgnw tfgtlvftvl
     1021 vftvtlklal dthywtwinh fviwgslvfy iifsllwggi iwpflnyqrm yyvfmqmlss
     1081 gpawlgiill itvsllpdvl kkvlcrqlwp tateriqnas rhcqehisef tplaclkspr
     1141 yrssdcsssp arrsnahskk mmfthwrgid ysvlpsvfgy snkhcrssag ycysgsglet
     1201 sv
//
LOCUS       XP_053927289            1194 aa            linear   VRT 09-MAR-2023
DEFINITION  phospholipid-transporting ATPase IH isoform X2 [Cuculus canorus].
ACCESSION   XP_053927289
VERSION     XP_053927289.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071314.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1194
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1194
                     /product="phospholipid-transporting ATPase IH isoform X2"
                     /calculated_mol_wt=136716
     Region          47..983
                     /region_name="P-type_ATPase_APLT_Dnf-like"
                     /note="Aminophospholipid translocases (APLTs), similar to
                     Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2,
                     -10D, -11B, -11C; cd02073"
                     /db_xref="CDD:319770"
     Site            order(414..416,553,576..578,640,687..689,798,801,804,825,
                     828)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:319770"
     Region          <891..>1092
                     /region_name="MelB"
                     /note="Na+/melibiose symporter or related transporter
                     [Carbohydrate transport and metabolism]; COG2211"
                     /db_xref="CDD:441813"
     CDS             1..1194
                     /gene="ATP11A"
                     /coded_by="XM_054071314.1:283..3867"
                     /db_xref="GeneID:104056665"
ORIGIN      
        1 mdcsllrtlv srycageenw vdsrtiyvgh repppgteay ipqrfpdnri vsskytfwnf
       61 ipknlfeqfr rianfyflii flvqliidtp tspvtsglpl lfvitvtaik qgyedwlrhk
      121 adnamnqcpv hfiqhgklvr kqsrklrvgd ivmvkedetf pcdliflsss rgdgtcfvtt
      181 asldgesshk tyyavqdtka fhseqeidal hatieceqpq pdlykfvgri nvyhdrnept
      241 arplgsenll lrgatlknte kifgvaiytg metkmalnyq aksqkrsave ksmnvflivy
      301 lciliskali ntvlkyvwqs epfrdepwyn qkteperkrh lflraftdfl afmvlfnyii
      361 pvsmyvtvem qkflgsyfla wdeemfdedt gegplvntsd lneelgqiey vftdktgtlt
      421 ennmefvecc igghvyvphv vcngqilhdc tgidmidssp ggsgkereel ffralclcht
      481 vqvkdddnvd glkknqfsrr sciyissspd evalvegiqr lgytylrlkd nfmeilnren
      541 klekfellev lsfdsvrrrm svivksstgd iflfckgads sifprvkegk ieqvrsrver
      601 naveglrtlc vaykkltake ygdvqkllqn aklalqdrek klaevyekie rdfillgata
      661 vedrlqekaa dtiealqkag ikvwvltgdk metaaatcya cklfrrntqi lelttkkiee
      721 qslhdvlfdl sktvlrhsgs ltrdtfsgls tdmqdyglii dgaalslimk prqdgssany
      781 relfleicrn csavlccrma plqkaqivkl iklsrehpit laigdgandv smileahvgi
      841 giigkegrqa arnsdyaipk fkhlkkmllv hghfyyvris elvqyffykn vcfifpqfly
      901 qffcgfsqqt lydtayltly nisftslpil lyglmeqhvs adtlkrepsl yrdvaknall
      961 rwrafiywtf lgvfdavvff fgayflfdnt iltsngqvfg nwtfgtlvft vlvftvtlkl
     1021 aldthywtwi nhfviwgslv fyiifsllwg giiwpflnyq rmyyvfmqml ssgpawlgii
     1081 llitvsllpd vlkkvlcrql wptateriqn asrhcqehis eftplaclks pryrssdcss
     1141 sparrsnahs kkmmfthwrg idysvlpsvf gysnkhcrss agycysgsgl etsv
//
LOCUS       XP_053927300            1169 aa            linear   VRT 09-MAR-2023
DEFINITION  phospholipid-transporting ATPase IH isoform X3 [Cuculus canorus].
ACCESSION   XP_053927300
VERSION     XP_053927300.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071325.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1169
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1169
                     /product="phospholipid-transporting ATPase IH isoform X3"
                     /calculated_mol_wt=134054
     Region          47..983
                     /region_name="P-type_ATPase_APLT_Dnf-like"
                     /note="Aminophospholipid translocases (APLTs), similar to
                     Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2,
                     -10D, -11B, -11C; cd02073"
                     /db_xref="CDD:319770"
     Site            order(414..416,553,576..578,640,687..689,798,801,804,825,
                     828)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:319770"
     Region          <891..>1100
                     /region_name="MelB"
                     /note="Na+/melibiose symporter or related transporter
                     [Carbohydrate transport and metabolism]; COG2211"
                     /db_xref="CDD:441813"
     CDS             1..1169
                     /gene="ATP11A"
                     /coded_by="XM_054071325.1:283..3792"
                     /db_xref="GeneID:104056665"
ORIGIN      
        1 mdcsllrtlv srycageenw vdsrtiyvgh repppgteay ipqrfpdnri vsskytfwnf
       61 ipknlfeqfr rianfyflii flvqliidtp tspvtsglpl lfvitvtaik qgyedwlrhk
      121 adnamnqcpv hfiqhgklvr kqsrklrvgd ivmvkedetf pcdliflsss rgdgtcfvtt
      181 asldgesshk tyyavqdtka fhseqeidal hatieceqpq pdlykfvgri nvyhdrnept
      241 arplgsenll lrgatlknte kifgvaiytg metkmalnyq aksqkrsave ksmnvflivy
      301 lciliskali ntvlkyvwqs epfrdepwyn qkteperkrh lflraftdfl afmvlfnyii
      361 pvsmyvtvem qkflgsyfla wdeemfdedt gegplvntsd lneelgqiey vftdktgtlt
      421 ennmefvecc igghvyvphv vcngqilhdc tgidmidssp ggsgkereel ffralclcht
      481 vqvkdddnvd glkknqfsrr sciyissspd evalvegiqr lgytylrlkd nfmeilnren
      541 klekfellev lsfdsvrrrm svivksstgd iflfckgads sifprvkegk ieqvrsrver
      601 naveglrtlc vaykkltake ygdvqkllqn aklalqdrek klaevyekie rdfillgata
      661 vedrlqekaa dtiealqkag ikvwvltgdk metaaatcya cklfrrntqi lelttkkiee
      721 qslhdvlfdl sktvlrhsgs ltrdtfsgls tdmqdyglii dgaalslimk prqdgssany
      781 relfleicrn csavlccrma plqkaqivkl iklsrehpit laigdgandv smileahvgi
      841 giigkegrqa arnsdyaipk fkhlkkmllv hghfyyvris elvqyffykn vcfifpqfly
      901 qffcgfsqqt lydtayltly nisftslpil lyglmeqhvs adtlkrepsl yrdvaknall
      961 rwrafiywtf lgvfdavvff fgayflfdnt iltsngqlmt tsthmvfgnw tfgtlvftvl
     1021 vftvtlklal dthywtwinh fviwgslvfy iifsllwggi iwpflnyqrm yyvfmqmlss
     1081 gpawlgiill itvsllpdvl kkvlcrqlwp tateriqnas rhcqehisef tplaclkspr
     1141 yrssdcsssp arrtnwcflc anllsrntl
//
LOCUS       XP_053927309            1169 aa            linear   VRT 09-MAR-2023
DEFINITION  phospholipid-transporting ATPase IH isoform X3 [Cuculus canorus].
ACCESSION   XP_053927309
VERSION     XP_053927309.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071334.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1169
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1169
                     /product="phospholipid-transporting ATPase IH isoform X3"
                     /calculated_mol_wt=134054
     Region          47..983
                     /region_name="P-type_ATPase_APLT_Dnf-like"
                     /note="Aminophospholipid translocases (APLTs), similar to
                     Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2,
                     -10D, -11B, -11C; cd02073"
                     /db_xref="CDD:319770"
     Site            order(414..416,553,576..578,640,687..689,798,801,804,825,
                     828)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:319770"
     Region          <891..>1100
                     /region_name="MelB"
                     /note="Na+/melibiose symporter or related transporter
                     [Carbohydrate transport and metabolism]; COG2211"
                     /db_xref="CDD:441813"
     CDS             1..1169
                     /gene="ATP11A"
                     /coded_by="XM_054071334.1:283..3792"
                     /db_xref="GeneID:104056665"
ORIGIN      
        1 mdcsllrtlv srycageenw vdsrtiyvgh repppgteay ipqrfpdnri vsskytfwnf
       61 ipknlfeqfr rianfyflii flvqliidtp tspvtsglpl lfvitvtaik qgyedwlrhk
      121 adnamnqcpv hfiqhgklvr kqsrklrvgd ivmvkedetf pcdliflsss rgdgtcfvtt
      181 asldgesshk tyyavqdtka fhseqeidal hatieceqpq pdlykfvgri nvyhdrnept
      241 arplgsenll lrgatlknte kifgvaiytg metkmalnyq aksqkrsave ksmnvflivy
      301 lciliskali ntvlkyvwqs epfrdepwyn qkteperkrh lflraftdfl afmvlfnyii
      361 pvsmyvtvem qkflgsyfla wdeemfdedt gegplvntsd lneelgqiey vftdktgtlt
      421 ennmefvecc igghvyvphv vcngqilhdc tgidmidssp ggsgkereel ffralclcht
      481 vqvkdddnvd glkknqfsrr sciyissspd evalvegiqr lgytylrlkd nfmeilnren
      541 klekfellev lsfdsvrrrm svivksstgd iflfckgads sifprvkegk ieqvrsrver
      601 naveglrtlc vaykkltake ygdvqkllqn aklalqdrek klaevyekie rdfillgata
      661 vedrlqekaa dtiealqkag ikvwvltgdk metaaatcya cklfrrntqi lelttkkiee
      721 qslhdvlfdl sktvlrhsgs ltrdtfsgls tdmqdyglii dgaalslimk prqdgssany
      781 relfleicrn csavlccrma plqkaqivkl iklsrehpit laigdgandv smileahvgi
      841 giigkegrqa arnsdyaipk fkhlkkmllv hghfyyvris elvqyffykn vcfifpqfly
      901 qffcgfsqqt lydtayltly nisftslpil lyglmeqhvs adtlkrepsl yrdvaknall
      961 rwrafiywtf lgvfdavvff fgayflfdnt iltsngqlmt tsthmvfgnw tfgtlvftvl
     1021 vftvtlklal dthywtwinh fviwgslvfy iifsllwggi iwpflnyqrm yyvfmqmlss
     1081 gpawlgiill itvsllpdvl kkvlcrqlwp tateriqnas rhcqehisef tplaclkspr
     1141 yrssdcsssp arrtnwcflc anllsrntl
//
LOCUS       XP_053927318            1146 aa            linear   VRT 09-MAR-2023
DEFINITION  phospholipid-transporting ATPase IH isoform X4 [Cuculus canorus].
ACCESSION   XP_053927318
VERSION     XP_053927318.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071343.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1146
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1146
                     /product="phospholipid-transporting ATPase IH isoform X4"
                     /calculated_mol_wt=131188
     Region          47..983
                     /region_name="P-type_ATPase_APLT_Dnf-like"
                     /note="Aminophospholipid translocases (APLTs), similar to
                     Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2,
                     -10D, -11B, -11C; cd02073"
                     /db_xref="CDD:319770"
     Site            order(414..416,553,576..578,640,687..689,798,801,804,825,
                     828)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:319770"
     Region          <891..>1100
                     /region_name="MelB"
                     /note="Na+/melibiose symporter or related transporter
                     [Carbohydrate transport and metabolism]; COG2211"
                     /db_xref="CDD:441813"
     CDS             1..1146
                     /gene="ATP11A"
                     /coded_by="XM_054071343.1:283..3723"
                     /db_xref="GeneID:104056665"
ORIGIN      
        1 mdcsllrtlv srycageenw vdsrtiyvgh repppgteay ipqrfpdnri vsskytfwnf
       61 ipknlfeqfr rianfyflii flvqliidtp tspvtsglpl lfvitvtaik qgyedwlrhk
      121 adnamnqcpv hfiqhgklvr kqsrklrvgd ivmvkedetf pcdliflsss rgdgtcfvtt
      181 asldgesshk tyyavqdtka fhseqeidal hatieceqpq pdlykfvgri nvyhdrnept
      241 arplgsenll lrgatlknte kifgvaiytg metkmalnyq aksqkrsave ksmnvflivy
      301 lciliskali ntvlkyvwqs epfrdepwyn qkteperkrh lflraftdfl afmvlfnyii
      361 pvsmyvtvem qkflgsyfla wdeemfdedt gegplvntsd lneelgqiey vftdktgtlt
      421 ennmefvecc igghvyvphv vcngqilhdc tgidmidssp ggsgkereel ffralclcht
      481 vqvkdddnvd glkknqfsrr sciyissspd evalvegiqr lgytylrlkd nfmeilnren
      541 klekfellev lsfdsvrrrm svivksstgd iflfckgads sifprvkegk ieqvrsrver
      601 naveglrtlc vaykkltake ygdvqkllqn aklalqdrek klaevyekie rdfillgata
      661 vedrlqekaa dtiealqkag ikvwvltgdk metaaatcya cklfrrntqi lelttkkiee
      721 qslhdvlfdl sktvlrhsgs ltrdtfsgls tdmqdyglii dgaalslimk prqdgssany
      781 relfleicrn csavlccrma plqkaqivkl iklsrehpit laigdgandv smileahvgi
      841 giigkegrqa arnsdyaipk fkhlkkmllv hghfyyvris elvqyffykn vcfifpqfly
      901 qffcgfsqqt lydtayltly nisftslpil lyglmeqhvs adtlkrepsl yrdvaknall
      961 rwrafiywtf lgvfdavvff fgayflfdnt iltsngqlmt tsthmvfgnw tfgtlvftvl
     1021 vftvtlklal dthywtwinh fviwgslvfy iifsllwggi iwpflnyqrm yyvfmqmlss
     1081 gpawlgiill itvsllpdvl kkvlcrqlwp tateriqksm rhktalkalv nsdgpllegn
     1141 lsasep
//
LOCUS       XP_053927319            1146 aa            linear   VRT 09-MAR-2023
DEFINITION  phospholipid-transporting ATPase IH isoform X4 [Cuculus canorus].
ACCESSION   XP_053927319
VERSION     XP_053927319.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071344.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1146
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1146
                     /product="phospholipid-transporting ATPase IH isoform X4"
                     /calculated_mol_wt=131188
     Region          47..983
                     /region_name="P-type_ATPase_APLT_Dnf-like"
                     /note="Aminophospholipid translocases (APLTs), similar to
                     Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2,
                     -10D, -11B, -11C; cd02073"
                     /db_xref="CDD:319770"
     Site            order(414..416,553,576..578,640,687..689,798,801,804,825,
                     828)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:319770"
     Region          <891..>1100
                     /region_name="MelB"
                     /note="Na+/melibiose symporter or related transporter
                     [Carbohydrate transport and metabolism]; COG2211"
                     /db_xref="CDD:441813"
     CDS             1..1146
                     /gene="ATP11A"
                     /coded_by="XM_054071344.1:283..3723"
                     /db_xref="GeneID:104056665"
ORIGIN      
        1 mdcsllrtlv srycageenw vdsrtiyvgh repppgteay ipqrfpdnri vsskytfwnf
       61 ipknlfeqfr rianfyflii flvqliidtp tspvtsglpl lfvitvtaik qgyedwlrhk
      121 adnamnqcpv hfiqhgklvr kqsrklrvgd ivmvkedetf pcdliflsss rgdgtcfvtt
      181 asldgesshk tyyavqdtka fhseqeidal hatieceqpq pdlykfvgri nvyhdrnept
      241 arplgsenll lrgatlknte kifgvaiytg metkmalnyq aksqkrsave ksmnvflivy
      301 lciliskali ntvlkyvwqs epfrdepwyn qkteperkrh lflraftdfl afmvlfnyii
      361 pvsmyvtvem qkflgsyfla wdeemfdedt gegplvntsd lneelgqiey vftdktgtlt
      421 ennmefvecc igghvyvphv vcngqilhdc tgidmidssp ggsgkereel ffralclcht
      481 vqvkdddnvd glkknqfsrr sciyissspd evalvegiqr lgytylrlkd nfmeilnren
      541 klekfellev lsfdsvrrrm svivksstgd iflfckgads sifprvkegk ieqvrsrver
      601 naveglrtlc vaykkltake ygdvqkllqn aklalqdrek klaevyekie rdfillgata
      661 vedrlqekaa dtiealqkag ikvwvltgdk metaaatcya cklfrrntqi lelttkkiee
      721 qslhdvlfdl sktvlrhsgs ltrdtfsgls tdmqdyglii dgaalslimk prqdgssany
      781 relfleicrn csavlccrma plqkaqivkl iklsrehpit laigdgandv smileahvgi
      841 giigkegrqa arnsdyaipk fkhlkkmllv hghfyyvris elvqyffykn vcfifpqfly
      901 qffcgfsqqt lydtayltly nisftslpil lyglmeqhvs adtlkrepsl yrdvaknall
      961 rwrafiywtf lgvfdavvff fgayflfdnt iltsngqlmt tsthmvfgnw tfgtlvftvl
     1021 vftvtlklal dthywtwinh fviwgslvfy iifsllwggi iwpflnyqrm yyvfmqmlss
     1081 gpawlgiill itvsllpdvl kkvlcrqlwp tateriqksm rhktalkalv nsdgpllegn
     1141 lsasep
//
LOCUS       XP_053927329            1142 aa            linear   VRT 09-MAR-2023
DEFINITION  phospholipid-transporting ATPase IH isoform X5 [Cuculus canorus].
ACCESSION   XP_053927329
VERSION     XP_053927329.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071354.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1142
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1142
                     /product="phospholipid-transporting ATPase IH isoform X5"
                     /calculated_mol_wt=130914
     Region          47..983
                     /region_name="P-type_ATPase_APLT_Dnf-like"
                     /note="Aminophospholipid translocases (APLTs), similar to
                     Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2,
                     -10D, -11B, -11C; cd02073"
                     /db_xref="CDD:319770"
     Site            order(414..416,553,576..578,640,687..689,798,801,804,825,
                     828)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:319770"
     Region          <891..>1100
                     /region_name="MelB"
                     /note="Na+/melibiose symporter or related transporter
                     [Carbohydrate transport and metabolism]; COG2211"
                     /db_xref="CDD:441813"
     CDS             1..1142
                     /gene="ATP11A"
                     /coded_by="XM_054071354.1:283..3711"
                     /db_xref="GeneID:104056665"
ORIGIN      
        1 mdcsllrtlv srycageenw vdsrtiyvgh repppgteay ipqrfpdnri vsskytfwnf
       61 ipknlfeqfr rianfyflii flvqliidtp tspvtsglpl lfvitvtaik qgyedwlrhk
      121 adnamnqcpv hfiqhgklvr kqsrklrvgd ivmvkedetf pcdliflsss rgdgtcfvtt
      181 asldgesshk tyyavqdtka fhseqeidal hatieceqpq pdlykfvgri nvyhdrnept
      241 arplgsenll lrgatlknte kifgvaiytg metkmalnyq aksqkrsave ksmnvflivy
      301 lciliskali ntvlkyvwqs epfrdepwyn qkteperkrh lflraftdfl afmvlfnyii
      361 pvsmyvtvem qkflgsyfla wdeemfdedt gegplvntsd lneelgqiey vftdktgtlt
      421 ennmefvecc igghvyvphv vcngqilhdc tgidmidssp ggsgkereel ffralclcht
      481 vqvkdddnvd glkknqfsrr sciyissspd evalvegiqr lgytylrlkd nfmeilnren
      541 klekfellev lsfdsvrrrm svivksstgd iflfckgads sifprvkegk ieqvrsrver
      601 naveglrtlc vaykkltake ygdvqkllqn aklalqdrek klaevyekie rdfillgata
      661 vedrlqekaa dtiealqkag ikvwvltgdk metaaatcya cklfrrntqi lelttkkiee
      721 qslhdvlfdl sktvlrhsgs ltrdtfsgls tdmqdyglii dgaalslimk prqdgssany
      781 relfleicrn csavlccrma plqkaqivkl iklsrehpit laigdgandv smileahvgi
      841 giigkegrqa arnsdyaipk fkhlkkmllv hghfyyvris elvqyffykn vcfifpqfly
      901 qffcgfsqqt lydtayltly nisftslpil lyglmeqhvs adtlkrepsl yrdvaknall
      961 rwrafiywtf lgvfdavvff fgayflfdnt iltsngqlmt tsthmvfgnw tfgtlvftvl
     1021 vftvtlklal dthywtwinh fviwgslvfy iifsllwggi iwpflnyqrm yyvfmqmlss
     1081 gpawlgiill itvsllpdvl kkvlcrqlwp tateriqtkh qclsveqsti fmlsqtsssl
     1141 sf
//
LOCUS       XP_053927340            1138 aa            linear   VRT 09-MAR-2023
DEFINITION  phospholipid-transporting ATPase IH isoform X6 [Cuculus canorus].
ACCESSION   XP_053927340
VERSION     XP_053927340.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071365.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1138
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1138
                     /product="phospholipid-transporting ATPase IH isoform X6"
                     /calculated_mol_wt=130285
     Region          47..983
                     /region_name="P-type_ATPase_APLT_Dnf-like"
                     /note="Aminophospholipid translocases (APLTs), similar to
                     Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2,
                     -10D, -11B, -11C; cd02073"
                     /db_xref="CDD:319770"
     Site            order(414..416,553,576..578,640,687..689,798,801,804,825,
                     828)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:319770"
     Region          <891..>1092
                     /region_name="MelB"
                     /note="Na+/melibiose symporter or related transporter
                     [Carbohydrate transport and metabolism]; COG2211"
                     /db_xref="CDD:441813"
     CDS             1..1138
                     /gene="ATP11A"
                     /coded_by="XM_054071365.1:283..3699"
                     /db_xref="GeneID:104056665"
ORIGIN      
        1 mdcsllrtlv srycageenw vdsrtiyvgh repppgteay ipqrfpdnri vsskytfwnf
       61 ipknlfeqfr rianfyflii flvqliidtp tspvtsglpl lfvitvtaik qgyedwlrhk
      121 adnamnqcpv hfiqhgklvr kqsrklrvgd ivmvkedetf pcdliflsss rgdgtcfvtt
      181 asldgesshk tyyavqdtka fhseqeidal hatieceqpq pdlykfvgri nvyhdrnept
      241 arplgsenll lrgatlknte kifgvaiytg metkmalnyq aksqkrsave ksmnvflivy
      301 lciliskali ntvlkyvwqs epfrdepwyn qkteperkrh lflraftdfl afmvlfnyii
      361 pvsmyvtvem qkflgsyfla wdeemfdedt gegplvntsd lneelgqiey vftdktgtlt
      421 ennmefvecc igghvyvphv vcngqilhdc tgidmidssp ggsgkereel ffralclcht
      481 vqvkdddnvd glkknqfsrr sciyissspd evalvegiqr lgytylrlkd nfmeilnren
      541 klekfellev lsfdsvrrrm svivksstgd iflfckgads sifprvkegk ieqvrsrver
      601 naveglrtlc vaykkltake ygdvqkllqn aklalqdrek klaevyekie rdfillgata
      661 vedrlqekaa dtiealqkag ikvwvltgdk metaaatcya cklfrrntqi lelttkkiee
      721 qslhdvlfdl sktvlrhsgs ltrdtfsgls tdmqdyglii dgaalslimk prqdgssany
      781 relfleicrn csavlccrma plqkaqivkl iklsrehpit laigdgandv smileahvgi
      841 giigkegrqa arnsdyaipk fkhlkkmllv hghfyyvris elvqyffykn vcfifpqfly
      901 qffcgfsqqt lydtayltly nisftslpil lyglmeqhvs adtlkrepsl yrdvaknall
      961 rwrafiywtf lgvfdavvff fgayflfdnt iltsngqvfg nwtfgtlvft vlvftvtlkl
     1021 aldthywtwi nhfviwgslv fyiifsllwg giiwpflnyq rmyyvfmqml ssgpawlgii
     1081 llitvsllpd vlkkvlcrql wptateriqk smrhktalka lvnsdgplle gnlsasep
//
LOCUS       XP_053927350            1134 aa            linear   VRT 09-MAR-2023
DEFINITION  phospholipid-transporting ATPase IH isoform X7 [Cuculus canorus].
ACCESSION   XP_053927350
VERSION     XP_053927350.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071375.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1134
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1134
                     /product="phospholipid-transporting ATPase IH isoform X7"
                     /calculated_mol_wt=130011
     Region          47..983
                     /region_name="P-type_ATPase_APLT_Dnf-like"
                     /note="Aminophospholipid translocases (APLTs), similar to
                     Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2,
                     -10D, -11B, -11C; cd02073"
                     /db_xref="CDD:319770"
     Site            order(414..416,553,576..578,640,687..689,798,801,804,825,
                     828)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:319770"
     Region          <891..>1092
                     /region_name="MelB"
                     /note="Na+/melibiose symporter or related transporter
                     [Carbohydrate transport and metabolism]; COG2211"
                     /db_xref="CDD:441813"
     CDS             1..1134
                     /gene="ATP11A"
                     /coded_by="XM_054071375.1:283..3687"
                     /db_xref="GeneID:104056665"
ORIGIN      
        1 mdcsllrtlv srycageenw vdsrtiyvgh repppgteay ipqrfpdnri vsskytfwnf
       61 ipknlfeqfr rianfyflii flvqliidtp tspvtsglpl lfvitvtaik qgyedwlrhk
      121 adnamnqcpv hfiqhgklvr kqsrklrvgd ivmvkedetf pcdliflsss rgdgtcfvtt
      181 asldgesshk tyyavqdtka fhseqeidal hatieceqpq pdlykfvgri nvyhdrnept
      241 arplgsenll lrgatlknte kifgvaiytg metkmalnyq aksqkrsave ksmnvflivy
      301 lciliskali ntvlkyvwqs epfrdepwyn qkteperkrh lflraftdfl afmvlfnyii
      361 pvsmyvtvem qkflgsyfla wdeemfdedt gegplvntsd lneelgqiey vftdktgtlt
      421 ennmefvecc igghvyvphv vcngqilhdc tgidmidssp ggsgkereel ffralclcht
      481 vqvkdddnvd glkknqfsrr sciyissspd evalvegiqr lgytylrlkd nfmeilnren
      541 klekfellev lsfdsvrrrm svivksstgd iflfckgads sifprvkegk ieqvrsrver
      601 naveglrtlc vaykkltake ygdvqkllqn aklalqdrek klaevyekie rdfillgata
      661 vedrlqekaa dtiealqkag ikvwvltgdk metaaatcya cklfrrntqi lelttkkiee
      721 qslhdvlfdl sktvlrhsgs ltrdtfsgls tdmqdyglii dgaalslimk prqdgssany
      781 relfleicrn csavlccrma plqkaqivkl iklsrehpit laigdgandv smileahvgi
      841 giigkegrqa arnsdyaipk fkhlkkmllv hghfyyvris elvqyffykn vcfifpqfly
      901 qffcgfsqqt lydtayltly nisftslpil lyglmeqhvs adtlkrepsl yrdvaknall
      961 rwrafiywtf lgvfdavvff fgayflfdnt iltsngqvfg nwtfgtlvft vlvftvtlkl
     1021 aldthywtwi nhfviwgslv fyiifsllwg giiwpflnyq rmyyvfmqml ssgpawlgii
     1081 llitvsllpd vlkkvlcrql wptateriqt khqclsveqs tifmlsqtss slsf
//
LOCUS       XP_053927363             520 aa            linear   VRT 09-MAR-2023
DEFINITION  CCR4-NOT transcription complex subunit 2 [Cuculus canorus].
ACCESSION   XP_053927363
VERSION     XP_053927363.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071388.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..520
                     /product="CCR4-NOT transcription complex subunit 2"
                     /calculated_mol_wt=57217
     Region          376..499
                     /region_name="NOT2_3_5"
                     /note="NOT2 / NOT3 / NOT5 family; pfam04153"
                     /db_xref="CDD:461199"
     CDS             1..520
                     /gene="CNOT2"
                     /coded_by="XM_054071388.1:168..1730"
                     /db_xref="GeneID:104063896"
ORIGIN      
        1 mfgasrkkfv egvdgdyhde nmyysqssmf phrsekdmla spstsgqlsq fgaslygqqs
       61 alglpmrgms nntpqlnrsl sqgtqlpshv tpttgvptms lhtppspsrg ilpmnprnmm
      121 nhsqvgqgig ipsrtnsmss sglgspnrss psiicmpkqq psrqpftvns msgfgmnrnq
      181 afgmnnslss nifngtdgse nvtgldlsdf paladrnrre gsgnptplin plagrapyvg
      241 mvtkpaseqs qdfsihnedf palpgssykd ptssnddnks nlstsgktss stdgpkfpgd
      301 kssttqnnnq qkkgiqvlpd grvtnipqgm vtdqfgmigl ltfiraaetd pgmvhlalgs
      361 dlttlglnln spenlypkfa spwasspcrp qdidfhvpse yltnihirdk laaiklgryg
      421 edllfylyym nggdvlqlla avelfnrdwr yhkeervwit rapgmeptmk tntyergtyy
      481 ffdclnwrkv akefhleydk leerphlpst fnynpaqqaf
//
LOCUS       XP_053927371             520 aa            linear   VRT 09-MAR-2023
DEFINITION  CCR4-NOT transcription complex subunit 2 [Cuculus canorus].
ACCESSION   XP_053927371
VERSION     XP_053927371.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071396.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..520
                     /product="CCR4-NOT transcription complex subunit 2"
                     /calculated_mol_wt=57217
     Region          376..499
                     /region_name="NOT2_3_5"
                     /note="NOT2 / NOT3 / NOT5 family; pfam04153"
                     /db_xref="CDD:461199"
     CDS             1..520
                     /gene="CNOT2"
                     /coded_by="XM_054071396.1:323..1885"
                     /db_xref="GeneID:104063896"
ORIGIN      
        1 mfgasrkkfv egvdgdyhde nmyysqssmf phrsekdmla spstsgqlsq fgaslygqqs
       61 alglpmrgms nntpqlnrsl sqgtqlpshv tpttgvptms lhtppspsrg ilpmnprnmm
      121 nhsqvgqgig ipsrtnsmss sglgspnrss psiicmpkqq psrqpftvns msgfgmnrnq
      181 afgmnnslss nifngtdgse nvtgldlsdf paladrnrre gsgnptplin plagrapyvg
      241 mvtkpaseqs qdfsihnedf palpgssykd ptssnddnks nlstsgktss stdgpkfpgd
      301 kssttqnnnq qkkgiqvlpd grvtnipqgm vtdqfgmigl ltfiraaetd pgmvhlalgs
      361 dlttlglnln spenlypkfa spwasspcrp qdidfhvpse yltnihirdk laaiklgryg
      421 edllfylyym nggdvlqlla avelfnrdwr yhkeervwit rapgmeptmk tntyergtyy
      481 ffdclnwrkv akefhleydk leerphlpst fnynpaqqaf
//
LOCUS       XP_053927382             991 aa            linear   VRT 09-MAR-2023
DEFINITION  cyclin-dependent kinase-like 5 isoform X1 [Cuculus canorus].
ACCESSION   XP_053927382
VERSION     XP_053927382.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071407.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..991
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..991
                     /product="cyclin-dependent kinase-like 5 isoform X1"
                     /calculated_mol_wt=110636
     Region          11..297
                     /region_name="STKc_CDKL5"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Cyclin-Dependent protein Kinase Like 5; cd07848"
                     /db_xref="CDD:270838"
     Site            order(19..23,27,40,42,59,73,89..92,95,97..98,135,137,
                     139..140,142,153,156,169,171..174,176,213)
                     /site_type="active"
                     /db_xref="CDD:270838"
     Site            order(19..23,27,40,42,73,89..92,95,135,137,139..140,142,
                     153)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270838"
     Site            order(59,97,135,137,156,169,171..174,176,213)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270838"
     Site            152..176
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270838"
     CDS             1..991
                     /gene="CDKL5"
                     /coded_by="XM_054071407.1:250..3225"
                     /db_xref="GeneID:104063389"
ORIGIN      
        1 mkipnignvm nkfeilgvvg egaygvvlkc rhketheiva ikkfkdseen eevkettlre
       61 lkmlrtlkqe nivelkeafr rrgklylvfe yveknmlell eempngvppe kvksyiyqli
      121 kaihwchknd ivhrdikpen llishndvlk lcdfgfarnl segsnanyte yvatrwyrsp
      181 elllgapygk avdmwsvgci lgelsdgqpl fpgeseidql ftiqkvlgpl paeqmklfys
      241 nprfhglrfp avnhpqsler rylgilsgvl ldlmknllkl dpadrylteq clnhpsfqtq
      301 rlldrcgssp srsakrkpyh vdsntlsnrn qaskssalqs hhrsnskdiq tlgvggpree
      361 glpanesfln gnlpgaspsp mhakkssntp asgnkdlann nmphllspke tkgktefdfn
      421 vdpkssdgpg tkylksntrs qqnrhsfmet sqsktgtlqp gdkhsrhsyi dtipqssksp
      481 syrtkskshg vltdsksvgn lsearaqaae pnssryfpss cmdlnsptsp taprhsdnrt
      541 llspsgrnnr segtldtrrp strhsktmee lklpdhmdgs hshslsaphe sfsyglgyts
      601 pfssqqrphr hsmyvsrdrv rskgseggls igqgmaaran slqllspqvq hksltrsvgs
      661 sredctedtn rggayhdpht edgastkenr ilyndpvprr vgsfyrvpsp rpestyienn
      721 vsnrasvlpa dsstvanhsk rqttfdtwks penlnshseq lkekekqgff raikkkkkks
      781 qttdstsgen psikkslfpl fnsknnlkhs sslkklpvvt lpmmpstdgq dllalqkaih
      841 ssnhqsgrqk dwhpekmtei qphsqplksl rkllhlsssn hpvpaeprfq plpsqpakas
      901 fsearihpms qssssgssnv rqeaqpksrp tlqipsqlep twhvspvnrs asdgppysdq
      961 lpsksgqngh tynrpnrsrm pnlndlketa l
//
LOCUS       XP_053927392             991 aa            linear   VRT 09-MAR-2023
DEFINITION  cyclin-dependent kinase-like 5 isoform X1 [Cuculus canorus].
ACCESSION   XP_053927392
VERSION     XP_053927392.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071417.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..991
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..991
                     /product="cyclin-dependent kinase-like 5 isoform X1"
                     /calculated_mol_wt=110636
     Region          11..297
                     /region_name="STKc_CDKL5"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Cyclin-Dependent protein Kinase Like 5; cd07848"
                     /db_xref="CDD:270838"
     Site            order(19..23,27,40,42,59,73,89..92,95,97..98,135,137,
                     139..140,142,153,156,169,171..174,176,213)
                     /site_type="active"
                     /db_xref="CDD:270838"
     Site            order(19..23,27,40,42,73,89..92,95,135,137,139..140,142,
                     153)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270838"
     Site            order(59,97,135,137,156,169,171..174,176,213)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270838"
     Site            152..176
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270838"
     CDS             1..991
                     /gene="CDKL5"
                     /coded_by="XM_054071417.1:234..3209"
                     /db_xref="GeneID:104063389"
ORIGIN      
        1 mkipnignvm nkfeilgvvg egaygvvlkc rhketheiva ikkfkdseen eevkettlre
       61 lkmlrtlkqe nivelkeafr rrgklylvfe yveknmlell eempngvppe kvksyiyqli
      121 kaihwchknd ivhrdikpen llishndvlk lcdfgfarnl segsnanyte yvatrwyrsp
      181 elllgapygk avdmwsvgci lgelsdgqpl fpgeseidql ftiqkvlgpl paeqmklfys
      241 nprfhglrfp avnhpqsler rylgilsgvl ldlmknllkl dpadrylteq clnhpsfqtq
      301 rlldrcgssp srsakrkpyh vdsntlsnrn qaskssalqs hhrsnskdiq tlgvggpree
      361 glpanesfln gnlpgaspsp mhakkssntp asgnkdlann nmphllspke tkgktefdfn
      421 vdpkssdgpg tkylksntrs qqnrhsfmet sqsktgtlqp gdkhsrhsyi dtipqssksp
      481 syrtkskshg vltdsksvgn lsearaqaae pnssryfpss cmdlnsptsp taprhsdnrt
      541 llspsgrnnr segtldtrrp strhsktmee lklpdhmdgs hshslsaphe sfsyglgyts
      601 pfssqqrphr hsmyvsrdrv rskgseggls igqgmaaran slqllspqvq hksltrsvgs
      661 sredctedtn rggayhdpht edgastkenr ilyndpvprr vgsfyrvpsp rpestyienn
      721 vsnrasvlpa dsstvanhsk rqttfdtwks penlnshseq lkekekqgff raikkkkkks
      781 qttdstsgen psikkslfpl fnsknnlkhs sslkklpvvt lpmmpstdgq dllalqkaih
      841 ssnhqsgrqk dwhpekmtei qphsqplksl rkllhlsssn hpvpaeprfq plpsqpakas
      901 fsearihpms qssssgssnv rqeaqpksrp tlqipsqlep twhvspvnrs asdgppysdq
      961 lpsksgqngh tynrpnrsrm pnlndlketa l
//
LOCUS       XP_053927402             950 aa            linear   VRT 09-MAR-2023
DEFINITION  cyclin-dependent kinase-like 5 isoform X2 [Cuculus canorus].
ACCESSION   XP_053927402
VERSION     XP_053927402.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071427.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..950
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..950
                     /product="cyclin-dependent kinase-like 5 isoform X2"
                     /calculated_mol_wt=106167
     Region          11..297
                     /region_name="STKc_CDKL5"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Cyclin-Dependent protein Kinase Like 5; cd07848"
                     /db_xref="CDD:270838"
     Site            order(19..23,27,40,42,59,73,89..92,95,97..98,135,137,
                     139..140,142,153,156,169,171..174,176,213)
                     /site_type="active"
                     /db_xref="CDD:270838"
     Site            order(19..23,27,40,42,73,89..92,95,135,137,139..140,142,
                     153)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270838"
     Site            order(59,97,135,137,156,169,171..174,176,213)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270838"
     Site            152..176
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270838"
     CDS             1..950
                     /gene="CDKL5"
                     /coded_by="XM_054071427.1:250..3102"
                     /db_xref="GeneID:104063389"
ORIGIN      
        1 mkipnignvm nkfeilgvvg egaygvvlkc rhketheiva ikkfkdseen eevkettlre
       61 lkmlrtlkqe nivelkeafr rrgklylvfe yveknmlell eempngvppe kvksyiyqli
      121 kaihwchknd ivhrdikpen llishndvlk lcdfgfarnl segsnanyte yvatrwyrsp
      181 elllgapygk avdmwsvgci lgelsdgqpl fpgeseidql ftiqkvlgpl paeqmklfys
      241 nprfhglrfp avnhpqsler rylgilsgvl ldlmknllkl dpadrylteq clnhpsfqtq
      301 rlldrcgssp srsakrkpyh vdsntlsnrn qaskssalqs hhrsnskdiq tlgvggpree
      361 glpanesfln gnlpgaspsp mhakkssntp asgnkdlann nmphllspke tkgktefdfn
      421 vdpkssdgpg tkylksntrs qqnrhsfmet sqsktgtlqp gdkhsrhsyi dtipqssksp
      481 syrtkskshg vltdsksvgn lsearaqaae pnssryfpss cmdlnsptsp taprhsdnrt
      541 llspsgrnnr segtldtrrp strhsktmee lklpdhmdgs hshslsaphe sfsyglgyts
      601 pfssqqrphr hsmyvsrdrv rskgseggls igqgmaaran slqllspqvq hksltrsvgs
      661 sredctedtn rggayhdpht edgastkenr ilyndpvprr vgsfyrvpsp rpestyienn
      721 vsnrasvlpa dsstvanhsk rqttfdtwks penlnshseq lkekekqgff raikkkkkks
      781 qtmpstdgqd llalqkaihs snhqsgrqkd whpekmteiq phsqplkslr kllhlsssnh
      841 pvpaeprfqp lpsqpakasf searihpmsq ssssgssnvr qeaqpksrpt lqipsqlept
      901 whvspvnrsa sdgppysdql psksgqnght ynrpnrsrmp nlndlketal
//
LOCUS       XP_053927413             767 aa            linear   VRT 09-MAR-2023
DEFINITION  cyclin-dependent kinase-like 5 isoform X3 [Cuculus canorus].
ACCESSION   XP_053927413
VERSION     XP_053927413.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071438.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..767
                     /product="cyclin-dependent kinase-like 5 isoform X3"
                     /calculated_mol_wt=85872
     Region          11..297
                     /region_name="STKc_CDKL5"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Cyclin-Dependent protein Kinase Like 5; cd07848"
                     /db_xref="CDD:270838"
     Site            order(19..23,27,40,42,59,73,89..92,95,97..98,135,137,
                     139..140,142,153,156,169,171..174,176,213)
                     /site_type="active"
                     /db_xref="CDD:270838"
     Site            order(19..23,27,40,42,73,89..92,95,135,137,139..140,142,
                     153)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270838"
     Site            order(59,97,135,137,156,169,171..174,176,213)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270838"
     Site            152..176
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270838"
     CDS             1..767
                     /gene="CDKL5"
                     /coded_by="XM_054071438.1:250..2553"
                     /db_xref="GeneID:104063389"
ORIGIN      
        1 mkipnignvm nkfeilgvvg egaygvvlkc rhketheiva ikkfkdseen eevkettlre
       61 lkmlrtlkqe nivelkeafr rrgklylvfe yveknmlell eempngvppe kvksyiyqli
      121 kaihwchknd ivhrdikpen llishndvlk lcdfgfarnl segsnanyte yvatrwyrsp
      181 elllgapygk avdmwsvgci lgelsdgqpl fpgeseidql ftiqkvlgpl paeqmklfys
      241 nprfhglrfp avnhpqsler rylgilsgvl ldlmknllkl dpadrylteq clnhpsfqtq
      301 rlldrcgssp srsakrkpyh vdsntlsnrn qaskssalqs hhrsnskdiq tlgvggpree
      361 glpanesfln gnlpgaspsp mhakkssntp asgnkdlann nmphllspke tkgktefdfn
      421 vdpkssdgpg tkylksntrs qqnrhsfmet sqsktgtlqp gdkhsrhsyi dtipqssksp
      481 syrtkskshg vltdsksvgn lsearaqaae pnssryfpss cmdlnsptsp taprhsdnrt
      541 llspsgrnnr segtldtrrp strhsktmee lklpdhmdgs hshslsaphe sfsyglgyts
      601 pfssqqrphr hsmyvsrdrv rskgseggls igqgmaaran slqllspqvq hksltrsvgs
      661 sredctedtn rggayhdpht edgastkenr ilyndpvprr vgsfyrvpsp rpestyienn
      721 vsnrasvlpa dsstvanhsk rqttfdtwfy thvskrrcll qklchll
//
LOCUS       XP_053927428            3470 aa            linear   VRT 09-MAR-2023
DEFINITION  reelin isoform X1 [Cuculus canorus].
ACCESSION   XP_053927428
VERSION     XP_053927428.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071453.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3470
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3470
                     /product="reelin isoform X1"
                     /calculated_mol_wt=388618
     Region          60..178
                     /region_name="Reeler"
                     /note="the N-terminal domain of reelin, F-spondin, and a
                     variety of other proteins; cd08544"
                     /db_xref="CDD:260081"
     Region          202..351
                     /region_name="Reelin_subrepeat_Nt"
                     /note="Additional N-terminal subrepeat of reelin; cd10036"
                     /db_xref="CDD:197344"
     Region          422..556
                     /region_name="Reelin_subrepeat_like"
                     /note="Tandem repeat subunit of reelin and related
                     proteins; cl15240"
                     /db_xref="CDD:197448"
     Region          526..671
                     /region_name="Reelin_repeat_1_subrepeat_1"
                     /note="N-terminal subrepeat of tandem repeat unit 1 of
                     reelin and related proteins; cd10037"
                     /db_xref="CDD:197345"
     Site            order(538..539,556..557,559,563..566,598..599,646..647,
                     649)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197345"
     Site            order(571,573,634,669,671)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197345"
     Site            order(586,607,609..610,625,627..628,636,638)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197345"
     Region          678..700
                     /region_name="EGF_2"
                     /note="EGF-like domain; pfam07974"
                     /db_xref="CDD:400365"
     Region          708..862
                     /region_name="Reelin_repeat_1_subrepeat_2"
                     /note="C-terminal subrepeat of tandem repeat unit 1 of
                     reelin and related proteins; cd10045"
                     /db_xref="CDD:197353"
     Site            order(710,712,768..769,771,773,823,825..827,860)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197353"
     Site            order(730,753..754,796,798,812)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197353"
     Site            order(761,802..803,805)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197353"
     Region          867..1034
                     /region_name="Reelin_repeat_2_subrepeat_1"
                     /note="N-terminal subrepeat of tandem repeat unit 2 of
                     reelin and related proteins; cd10038"
                     /db_xref="CDD:197346"
     Site            order(884..885,911..912,914,918..921,957..958,1005..1006,
                     1008)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197346"
     Site            order(927,929,993,1028,1030)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197346"
     Site            order(945,966,968..969,984,986..987,995,997)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197346"
     Region          1037..1059
                     /region_name="EGF_2"
                     /note="EGF-like domain; pfam07974"
                     /db_xref="CDD:400365"
     Region          1065..1220
                     /region_name="Reelin_repeat_2_subrepeat_2"
                     /note="C-terminal subrepeat of tandem repeat unit 2 of
                     reelin and related proteins; cd10046"
                     /db_xref="CDD:197354"
     Site            order(1068,1070,1128..1129,1131,1133,1181,1183..1185,1218)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197354"
     Site            order(1087,1113..1114,1154,1156,1170)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197354"
     Site            order(1121,1160..1161,1163)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197354"
     Region          1240..1410
                     /region_name="Reelin_repeat_3_subrepeat_1"
                     /note="N-terminal subrepeat of tandem repeat unit 3 of
                     reelin and related proteins; cd10039"
                     /db_xref="CDD:197347"
     Site            order(1257..1258,1284..1285,1287,1291..1294,1328..1329,
                     1383..1384,1386)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197347"
     Site            order(1300,1302,1371,1408,1410)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197347"
     Site            order(1316,1337,1339..1340,1362,1364..1365,1373,1375)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197347"
     Region          <1407..1441
                     /region_name="EB"
                     /note="EB module; pfam01683"
                     /db_xref="CDD:460294"
     Region          1448..1598
                     /region_name="Reelin_repeat_3_subrepeat_2"
                     /note="C-terminal subrepeat of tandem repeat unit 3 of
                     reelin and related proteins; cd10047"
                     /db_xref="CDD:197355"
     Site            order(1450,1452,1505..1506,1508,1510,1560,1562..1564,1596)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197355"
     Site            order(1467,1490..1491,1533,1535,1549)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197355"
     Site            order(1498,1539..1540,1542)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197355"
     Region          1606..1775
                     /region_name="Reelin_repeat_4_subrepeat_1"
                     /note="N-terminal subrepeat of tandem repeat unit 4 of
                     reelin and related proteins; cd10040"
                     /db_xref="CDD:197348"
     Site            order(1622..1623,1648..1649,1651,1655..1658,1692..1693,
                     1740..1741,1743)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197348"
     Site            order(1664,1666,1728,1764,1766)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197348"
     Site            order(1680,1701,1703..1704,1714,1716..1717,1730,1732)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197348"
     Region          1773..1795
                     /region_name="EGF_2"
                     /note="EGF-like domain; pfam07974"
                     /db_xref="CDD:400365"
     Region          1801..1938
                     /region_name="Reelin_repeat_4_subrepeat_2"
                     /note="C-terminal subrepeat of tandem repeat unit 4 of
                     reelin and related proteins; cd10048"
                     /db_xref="CDD:197356"
     Site            order(1804,1806,1861..1862,1864,1866,1909,1911..1913)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197356"
     Site            order(1822,1846..1847,1882,1884,1898)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197356"
     Site            order(1854,1888..1889,1891)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197356"
     Region          1957..2131
                     /region_name="Reelin_repeat_5_subrepeat_1"
                     /note="N-terminal subrepeat of tandem repeat unit 5 of
                     reelin and related proteins; cd10041"
                     /db_xref="CDD:197349"
     Site            order(1972..1973,2005..2006,2008,2012..2015,2049..2050,
                     2102..2103,2105)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197349"
     Site            order(2021,2023,2090,2128,2130)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197349"
     Site            order(2023,2034..2036,2059,2074..2076,2081,2084..2085,
                     2090,2092,2128,2131)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197349"
     Region          2137..2160
                     /region_name="EGF_2"
                     /note="EGF-like domain; pfam07974"
                     /db_xref="CDD:400365"
     Region          2166..2315
                     /region_name="Reelin_repeat_5_subrepeat_2"
                     /note="C-terminal subrepeat of tandem repeat unit 5 of
                     reelin and related proteins; cd10049"
                     /db_xref="CDD:197357"
     Site            order(2169,2171,2225..2226,2228,2230,2276,2278..2280,2313)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197357"
     Site            order(2187,2210..2211,2248,2250,2264)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197357"
     Site            order(2218,2254..2255,2257)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197357"
     Region          2323..2479
                     /region_name="Reelin_repeat_6_subrepeat_1"
                     /note="N-terminal subrepeat of tandem repeat unit 6 of
                     reelin and related proteins; cd10042"
                     /db_xref="CDD:197350"
     Site            order(2337..2338,2362..2363,2365,2369..2372,2405..2406,
                     2453..2454,2456)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197350"
     Site            order(2345,2358..2359,2389,2468,2470)
                     /site_type="other"
                     /note="reelin receptor interface"
                     /db_xref="CDD:197350"
     Site            order(2378,2380,2441,2477,2479)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197350"
     Site            order(2393,2414,2416..2417,2432,2434..2435,2443,2445)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197350"
     Region          2515..2662
                     /region_name="Reelin_repeat_6_subrepeat_2"
                     /note="C-terminal subrepeat of tandem repeat unit 6 of
                     reelin and related proteins; cd10050"
                     /db_xref="CDD:197358"
     Site            order(2518,2520,2574..2575,2577,2579,2623,2625..2627,2660)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197358"
     Site            order(2536,2559..2560,2596,2598,2612)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197358"
     Site            order(2567,2602..2603,2605)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197358"
     Region          2670..2854
                     /region_name="Reelin_repeat_7_subrepeat_1"
                     /note="N-terminal subrepeat of tandem repeat unit 7 of
                     reelin and related proteins; cd10043"
                     /db_xref="CDD:197351"
     Site            order(2713..2714,2739..2740,2742,2746..2749,2784..2785,
                     2829..2830,2832)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197351"
     Site            order(2755,2757,2819,2852,2854)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197351"
     Site            order(2772,2793,2795..2796,2807,2809..2810,2821,2823)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197351"
     Region          2861..2883
                     /region_name="EGF_2"
                     /note="EGF-like domain; pfam07974"
                     /db_xref="CDD:400365"
     Region          2890..3051
                     /region_name="Reelin_repeat_7_subrepeat_2"
                     /note="C-terminal subrepeat of tandem repeat unit 7 of
                     reelin and related proteins; cd10051"
                     /db_xref="CDD:197359"
     Site            order(2892,2894,2949..2950,2952,2954,3004,3006..3008,3048)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197359"
     Site            order(2911,2934..2935,2977,2979,2993)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197359"
     Site            order(2942,2983..2984,2986)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197359"
     Region          3056..3230
                     /region_name="Reelin_repeat_8_subrepeat_1"
                     /note="N-terminal subrepeat of tandem repeat unit 8 of
                     reelin and related proteins; cd10044"
                     /db_xref="CDD:197352"
     Site            order(3075..3076,3104..3105,3107,3111..3114,3150..3151,
                     3203..3204,3206)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197352"
     Site            order(3120,3122,3191,3227,3229)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197352"
     Site            order(3137,3159,3161..3162,3177,3179..3180,3193,3195)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197352"
     Region          3232..3260
                     /region_name="EGF_Tenascin"
                     /note="Tenascin EGF domain; cl46594"
                     /db_xref="CDD:480934"
     Region          3267..3427
                     /region_name="Reelin_repeat_8_subrepeat_2"
                     /note="C-terminal subrepeat of tandem repeat unit 8 of
                     reelin and related proteins; cd10052"
                     /db_xref="CDD:197360"
     Site            order(3269,3271,3329..3330,3332,3334,3388,3390..3392,3425)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197360"
     Site            order(3288,3314..3315,3361,3363,3377)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197360"
     Site            order(3322,3367..3368,3370)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197360"
     CDS             1..3470
                     /gene="RELN"
                     /coded_by="XM_054071453.1:104..10516"
                     /db_xref="GeneID:104061755"
ORIGIN      
        1 merrgvpggw pcllaalgal laagraaapr arfspffflc thhgelegdg eqgevlialh
       61 iagspsayvp gqeyhvtist stffdgllvt glytstsvqa sqsvggssaf gfgimsdhqf
      121 gnqfmcsvva shvshlpttn lsfvwiappa gtgcvnfmat athrgqvifk dalaqqlceq
      181 gapteaplhp hlaemhsdsi ilrddfdsyh qqelnptmws ecsncevgeq cgvimhsnav
      241 tfcepygpre ltttglnttt asilqfslgs gscrfsysdp sitvsyskni sadwtqleki
      301 sapsnvstii hilylpedak genvhfqwkq dyvqtgdvye acwgldnvli inaahrkvml
      361 ednldpvdtg nwlffpgatv khscqsdgns iyfhgtegse fnfattrdvd lstedaqeqw
      421 aeefesqpkg wdifgavigt ecgtlesgsa mvflrdgerk ictpymdttg ygnlrfyfsm
      481 ggtcdsgesh endvmlyaki egrrehipld tltyaaykvp slvsvvispd lqtpatkfcl
      541 kqkshqghnr nvwavdyfhv lpvlpstvth miqfsinlgc gtyqpgnsvs lefstnhgrs
      601 wsllhteclp eicagphlph stvyasenys gwnritiplp naaltsdtri rwrqtgpilg
      661 nmwaidniyi gpsclkfcsg rgqctrngck cdpgfsgpac etasqtfpvf isesftssrl
      721 ssyhnfysir gaevsfgcgv lasgkalvfn kdgrrqlits fldssqsrfl qftlrlgsks
      781 vlstckapdq pgegvllhys ydngitwkll ehysylnyhe priisvelpe darqigiqfr
      841 wwqpyhssqg edvwaideii mtsvlfnsis ldftnlvevt qslgfylgnv qpycghdwtl
      901 cftgdlklas smryvetqsm qigasymiqf nlvmgcgqaf tphmdnqvkl eystnhgltw
      961 hlvqeeclps mpscqeftsa siyhsseftq wrritvllpq ktwssatrfr wsqcyytaqd
     1021 ewaldniyig qqcpnmcsgh gwcdhgvcrc dsgfqgtecq penplpstim sdfenqdslk
     1081 tewqeiigge ivkpeegcgv issgsslyfn kagkrqlvsw dldttwvdfv qfyiqiggds
     1141 sscnkpdsre esvllqysnn gginwqllae myfsdfskpr fvylelpaaa ktpctrfrww
     1201 qpvfsgegyd qwaiddiiil sekqkhiipi vnptlpqnfy ekpafdypmn qmsiwlmlan
     1261 egmtknesfc satpsamlfg ksdgdrfavt rdlalkpgyv lqfklnigct nqysssapvl
     1321 lqyshdaglf wslvkegcyp aspgmkgceg ssrelseptv yhtgdfedwt ritlviprsl
     1381 aasktrfrwi qessshksvp pfgldgvyis epcpnycsgh gdcvsgvcfc dlgytashgt
     1441 cvpnvpnhse mfdrferkls plwhkitggq vgtgcgvlsd grslyfngpg kreartvpld
     1501 ttnirlvqfy vqigskatgn scnrprarne glvvqytndn gitwhllrel dfmsylepqv
     1561 vsidlprdak tpatafrwwq pqhgkhsaqw alddvligmn dssqtgfqdk fdgtmdlqas
     1621 wyriqggqvd idclsmdtal mfsenigkpr yaetwdfhvs astflqfels mgcskpysns
     1681 hsihlqysln ngrdwhlvte ecvppaigcq hytessiyts erfqnwkrit vylppatnsp
     1741 rtrfrwiqyn yasgvdswai dnvvlatgcp wmcsghgicd agrcvcdrgf ggpycvpvip
     1801 lpsvlkddfn gnlhpdlwpe vygaergnln gdtiksgtal ifkgeglrml vsrdldctnt
     1861 vyiqfsfkfi akgtpershs illqysvngg itwhlidefy ftqttdvlfi niplpytaqs
     1921 natrfrlwqp ynngkkeeiw iiddfiidgn nlknpmilld tfdfgpkedn wffypggnig
     1981 lycpysskga peedsamvfv snevgehsit trdlsvnent iiqfeinigc ttdsssadpv
     2041 klefsrdlga twhlllplcy sssshlsslc stehhpssty yagttqgwrr evihfgklhl
     2101 cglarfrwyq gfyptgsqpv twaidnvyig pqcdemcngh gscingtkci cdpgysgptc
     2161 kistknsdfl kddfegqles drfllvsggk psrkcgimsg gnnlffneeg lrmlmtrdld
     2221 lsqarfvqff mrlgcgkgmp dprsqpvllq yslnggltws llqeflfsns snvgryiale
     2281 ipmkarssst rlrwwqpsen ghfyspwvid qiliggnisg ntvleddftt ldsrkwllhp
     2341 ggtkmpvcgs tgdalvfiek astryvvttd ivvnedsflq idfaascsvt dscyaieley
     2401 svdlglswhp ilrdclptnv ecnkyhlqri lisdtfnkwt ritlplppyt rsqatrfrwh
     2461 qpapfdkqqt waidnvyigd gcidmcsghg kctqdncvcd enwgglycde petplptqlk
     2521 dnfnrspsnq nwltvnggkl stvcgavasg malhfsggcs rmlvtvdlnl tsaefiqfyf
     2581 mygclitpnn rnqgvlleys vnggiswkll meifydqfsk pgfvnillpy daktigtrfr
     2641 wwqpkhdgld qndwaidnvl isgsadqrtv mldtfssapl pqherspada gptgriafdm
     2701 fmedkttvne hwlfhddcsv erfcdspdgv micgshdgre vyavthdltp tegwimqfkv
     2761 svgcktsekl aqnqvhvqys tdfgvswsyl vpqclpadpk csgsvsqpsv ffptkgwkrv
     2821 tyslpenfvg npvrfrfyqq ysdmqwaidn fylgpgclen crghgdclne qcicdpgysg
     2881 pncyltqtlk tflkerfdne eikpdlwmsl eggntctecg ilaedttlyf ggatvrqavt
     2941 qdldlrgakf lqywgrigse nnmttchrpt crkegvlldy sidggiswtl lhemdyqkyi
     3001 svrhdyillp ehaltnttrl rwwqpftisn givvsgpdra qwaldnilig gaeinpsqlv
     3061 dtfddegtsh eenwsfypna vrtagfcgnp sfhlywpnkk kdkthnilss reliiqpgym
     3121 mqfkivvgce atscgdlhsv mleytkdart dswqlvqthc lpsssnsigc spfqfheati
     3181 ynsvnssawr ritiqlpdhv sssatqfrwi qkgeelekqs waidhvyige acpklcsghg
     3241 ycttgaicic degyqgddcs vfshdlpsyi kdnfeservt einwetiqgg vigngcgqla
     3301 pyahgdslyf ngcqirqavt kpldltrask imfvlqigsv sqtdscntnl sdpntvdkav
     3361 llqysvnngi twqviaqhqp kdfiqaqrvs ynvplearmk gvllrwwqpr hngtghdqwa
     3421 ldhvevvlde ksyiaskphq gfmtnhsaac ierhfltcvi fhcllslvlh
//
LOCUS       XP_053927437            3459 aa            linear   VRT 09-MAR-2023
DEFINITION  reelin isoform X2 [Cuculus canorus].
ACCESSION   XP_053927437
VERSION     XP_053927437.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071462.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3459
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3459
                     /product="reelin isoform X2"
                     /calculated_mol_wt=387946
     Region          60..178
                     /region_name="Reeler"
                     /note="the N-terminal domain of reelin, F-spondin, and a
                     variety of other proteins; cd08544"
                     /db_xref="CDD:260081"
     Region          202..351
                     /region_name="Reelin_subrepeat_Nt"
                     /note="Additional N-terminal subrepeat of reelin; cd10036"
                     /db_xref="CDD:197344"
     Region          422..556
                     /region_name="Reelin_subrepeat_like"
                     /note="Tandem repeat subunit of reelin and related
                     proteins; cl15240"
                     /db_xref="CDD:197448"
     Region          526..671
                     /region_name="Reelin_repeat_1_subrepeat_1"
                     /note="N-terminal subrepeat of tandem repeat unit 1 of
                     reelin and related proteins; cd10037"
                     /db_xref="CDD:197345"
     Site            order(538..539,556..557,559,563..566,598..599,646..647,
                     649)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197345"
     Site            order(571,573,634,669,671)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197345"
     Site            order(586,607,609..610,625,627..628,636,638)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197345"
     Region          678..700
                     /region_name="EGF_2"
                     /note="EGF-like domain; pfam07974"
                     /db_xref="CDD:400365"
     Region          708..862
                     /region_name="Reelin_repeat_1_subrepeat_2"
                     /note="C-terminal subrepeat of tandem repeat unit 1 of
                     reelin and related proteins; cd10045"
                     /db_xref="CDD:197353"
     Site            order(710,712,768..769,771,773,823,825..827,860)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197353"
     Site            order(730,753..754,796,798,812)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197353"
     Site            order(761,802..803,805)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197353"
     Region          867..1034
                     /region_name="Reelin_repeat_2_subrepeat_1"
                     /note="N-terminal subrepeat of tandem repeat unit 2 of
                     reelin and related proteins; cd10038"
                     /db_xref="CDD:197346"
     Site            order(884..885,911..912,914,918..921,957..958,1005..1006,
                     1008)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197346"
     Site            order(927,929,993,1028,1030)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197346"
     Site            order(945,966,968..969,984,986..987,995,997)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197346"
     Region          1037..1059
                     /region_name="EGF_2"
                     /note="EGF-like domain; pfam07974"
                     /db_xref="CDD:400365"
     Region          1065..1220
                     /region_name="Reelin_repeat_2_subrepeat_2"
                     /note="C-terminal subrepeat of tandem repeat unit 2 of
                     reelin and related proteins; cd10046"
                     /db_xref="CDD:197354"
     Site            order(1068,1070,1128..1129,1131,1133,1181,1183..1185,1218)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197354"
     Site            order(1087,1113..1114,1154,1156,1170)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197354"
     Site            order(1121,1160..1161,1163)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197354"
     Region          1240..1410
                     /region_name="Reelin_repeat_3_subrepeat_1"
                     /note="N-terminal subrepeat of tandem repeat unit 3 of
                     reelin and related proteins; cd10039"
                     /db_xref="CDD:197347"
     Site            order(1257..1258,1284..1285,1287,1291..1294,1328..1329,
                     1383..1384,1386)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197347"
     Site            order(1300,1302,1371,1408,1410)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197347"
     Site            order(1316,1337,1339..1340,1362,1364..1365,1373,1375)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197347"
     Region          <1407..1441
                     /region_name="EB"
                     /note="EB module; pfam01683"
                     /db_xref="CDD:460294"
     Region          1448..1598
                     /region_name="Reelin_repeat_3_subrepeat_2"
                     /note="C-terminal subrepeat of tandem repeat unit 3 of
                     reelin and related proteins; cd10047"
                     /db_xref="CDD:197355"
     Site            order(1450,1452,1505..1506,1508,1510,1560,1562..1564,1596)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197355"
     Site            order(1467,1490..1491,1533,1535,1549)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197355"
     Site            order(1498,1539..1540,1542)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197355"
     Region          1606..1775
                     /region_name="Reelin_repeat_4_subrepeat_1"
                     /note="N-terminal subrepeat of tandem repeat unit 4 of
                     reelin and related proteins; cd10040"
                     /db_xref="CDD:197348"
     Site            order(1622..1623,1648..1649,1651,1655..1658,1692..1693,
                     1740..1741,1743)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197348"
     Site            order(1664,1666,1728,1764,1766)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197348"
     Site            order(1680,1701,1703..1704,1714,1716..1717,1730,1732)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197348"
     Region          1773..1795
                     /region_name="EGF_2"
                     /note="EGF-like domain; pfam07974"
                     /db_xref="CDD:400365"
     Region          1801..1938
                     /region_name="Reelin_repeat_4_subrepeat_2"
                     /note="C-terminal subrepeat of tandem repeat unit 4 of
                     reelin and related proteins; cd10048"
                     /db_xref="CDD:197356"
     Site            order(1804,1806,1861..1862,1864,1866,1909,1911..1913)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197356"
     Site            order(1822,1846..1847,1882,1884,1898)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197356"
     Site            order(1854,1888..1889,1891)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197356"
     Region          1957..2131
                     /region_name="Reelin_repeat_5_subrepeat_1"
                     /note="N-terminal subrepeat of tandem repeat unit 5 of
                     reelin and related proteins; cd10041"
                     /db_xref="CDD:197349"
     Site            order(1972..1973,2005..2006,2008,2012..2015,2049..2050,
                     2102..2103,2105)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197349"
     Site            order(2021,2023,2090,2128,2130)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197349"
     Site            order(2023,2034..2036,2059,2074..2076,2081,2084..2085,
                     2090,2092,2128,2131)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197349"
     Region          2137..2160
                     /region_name="EGF_2"
                     /note="EGF-like domain; pfam07974"
                     /db_xref="CDD:400365"
     Region          2166..2315
                     /region_name="Reelin_repeat_5_subrepeat_2"
                     /note="C-terminal subrepeat of tandem repeat unit 5 of
                     reelin and related proteins; cd10049"
                     /db_xref="CDD:197357"
     Site            order(2169,2171,2225..2226,2228,2230,2276,2278..2280,2313)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197357"
     Site            order(2187,2210..2211,2248,2250,2264)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197357"
     Site            order(2218,2254..2255,2257)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197357"
     Region          2323..2479
                     /region_name="Reelin_repeat_6_subrepeat_1"
                     /note="N-terminal subrepeat of tandem repeat unit 6 of
                     reelin and related proteins; cd10042"
                     /db_xref="CDD:197350"
     Site            order(2337..2338,2362..2363,2365,2369..2372,2405..2406,
                     2453..2454,2456)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197350"
     Site            order(2345,2358..2359,2389,2468,2470)
                     /site_type="other"
                     /note="reelin receptor interface"
                     /db_xref="CDD:197350"
     Site            order(2378,2380,2441,2477,2479)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197350"
     Site            order(2393,2414,2416..2417,2432,2434..2435,2443,2445)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197350"
     Region          2515..2662
                     /region_name="Reelin_repeat_6_subrepeat_2"
                     /note="C-terminal subrepeat of tandem repeat unit 6 of
                     reelin and related proteins; cd10050"
                     /db_xref="CDD:197358"
     Site            order(2518,2520,2574..2575,2577,2579,2623,2625..2627,2660)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197358"
     Site            order(2536,2559..2560,2596,2598,2612)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197358"
     Site            order(2567,2602..2603,2605)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197358"
     Region          2670..2854
                     /region_name="Reelin_repeat_7_subrepeat_1"
                     /note="N-terminal subrepeat of tandem repeat unit 7 of
                     reelin and related proteins; cd10043"
                     /db_xref="CDD:197351"
     Site            order(2713..2714,2739..2740,2742,2746..2749,2784..2785,
                     2829..2830,2832)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197351"
     Site            order(2755,2757,2819,2852,2854)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197351"
     Site            order(2772,2793,2795..2796,2807,2809..2810,2821,2823)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197351"
     Region          2861..2883
                     /region_name="EGF_2"
                     /note="EGF-like domain; pfam07974"
                     /db_xref="CDD:400365"
     Region          2890..3051
                     /region_name="Reelin_repeat_7_subrepeat_2"
                     /note="C-terminal subrepeat of tandem repeat unit 7 of
                     reelin and related proteins; cd10051"
                     /db_xref="CDD:197359"
     Site            order(2892,2894,2949..2950,2952,2954,3004,3006..3008,3048)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197359"
     Site            order(2911,2934..2935,2977,2979,2993)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197359"
     Site            order(2942,2983..2984,2986)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197359"
     Region          3056..3230
                     /region_name="Reelin_repeat_8_subrepeat_1"
                     /note="N-terminal subrepeat of tandem repeat unit 8 of
                     reelin and related proteins; cd10044"
                     /db_xref="CDD:197352"
     Site            order(3075..3076,3104..3105,3107,3111..3114,3150..3151,
                     3203..3204,3206)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197352"
     Site            order(3120,3122,3191,3227,3229)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197352"
     Site            order(3137,3159,3161..3162,3177,3179..3180,3193,3195)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197352"
     Region          3232..3260
                     /region_name="EGF_Tenascin"
                     /note="Tenascin EGF domain; cl46594"
                     /db_xref="CDD:480934"
     Region          3267..3427
                     /region_name="Reelin_repeat_8_subrepeat_2"
                     /note="C-terminal subrepeat of tandem repeat unit 8 of
                     reelin and related proteins; cd10052"
                     /db_xref="CDD:197360"
     Site            order(3269,3271,3329..3330,3332,3334,3388,3390..3392,3425)
                     /site_type="other"
                     /note="reelin repeat interface"
                     /db_xref="CDD:197360"
     Site            order(3288,3314..3315,3361,3363,3377)
                     /site_type="other"
                     /note="reelin subrepeat interface"
                     /db_xref="CDD:197360"
     Site            order(3322,3367..3368,3370)
                     /site_type="other"
                     /note="EGF domain interface"
                     /db_xref="CDD:197360"
     CDS             1..3459
                     /gene="RELN"
                     /coded_by="XM_054071462.1:99..10478"
                     /db_xref="GeneID:104061755"
ORIGIN      
        1 merrgvpggw pcllaalgal laagraaapr arfspffflc thhgelegdg eqgevlialh
       61 iagspsayvp gqeyhvtist stffdgllvt glytstsvqa sqsvggssaf gfgimsdhqf
      121 gnqfmcsvva shvshlpttn lsfvwiappa gtgcvnfmat athrgqvifk dalaqqlceq
      181 gapteaplhp hlaemhsdsi ilrddfdsyh qqelnptmws ecsncevgeq cgvimhsnav
      241 tfcepygpre ltttglnttt asilqfslgs gscrfsysdp sitvsyskni sadwtqleki
      301 sapsnvstii hilylpedak genvhfqwkq dyvqtgdvye acwgldnvli inaahrkvml
      361 ednldpvdtg nwlffpgatv khscqsdgns iyfhgtegse fnfattrdvd lstedaqeqw
      421 aeefesqpkg wdifgavigt ecgtlesgsa mvflrdgerk ictpymdttg ygnlrfyfsm
      481 ggtcdsgesh endvmlyaki egrrehipld tltyaaykvp slvsvvispd lqtpatkfcl
      541 kqkshqghnr nvwavdyfhv lpvlpstvth miqfsinlgc gtyqpgnsvs lefstnhgrs
      601 wsllhteclp eicagphlph stvyasenys gwnritiplp naaltsdtri rwrqtgpilg
      661 nmwaidniyi gpsclkfcsg rgqctrngck cdpgfsgpac etasqtfpvf isesftssrl
      721 ssyhnfysir gaevsfgcgv lasgkalvfn kdgrrqlits fldssqsrfl qftlrlgsks
      781 vlstckapdq pgegvllhys ydngitwkll ehysylnyhe priisvelpe darqigiqfr
      841 wwqpyhssqg edvwaideii mtsvlfnsis ldftnlvevt qslgfylgnv qpycghdwtl
      901 cftgdlklas smryvetqsm qigasymiqf nlvmgcgqaf tphmdnqvkl eystnhgltw
      961 hlvqeeclps mpscqeftsa siyhsseftq wrritvllpq ktwssatrfr wsqcyytaqd
     1021 ewaldniyig qqcpnmcsgh gwcdhgvcrc dsgfqgtecq penplpstim sdfenqdslk
     1081 tewqeiigge ivkpeegcgv issgsslyfn kagkrqlvsw dldttwvdfv qfyiqiggds
     1141 sscnkpdsre esvllqysnn gginwqllae myfsdfskpr fvylelpaaa ktpctrfrww
     1201 qpvfsgegyd qwaiddiiil sekqkhiipi vnptlpqnfy ekpafdypmn qmsiwlmlan
     1261 egmtknesfc satpsamlfg ksdgdrfavt rdlalkpgyv lqfklnigct nqysssapvl
     1321 lqyshdaglf wslvkegcyp aspgmkgceg ssrelseptv yhtgdfedwt ritlviprsl
     1381 aasktrfrwi qessshksvp pfgldgvyis epcpnycsgh gdcvsgvcfc dlgytashgt
     1441 cvpnvpnhse mfdrferkls plwhkitggq vgtgcgvlsd grslyfngpg kreartvpld
     1501 ttnirlvqfy vqigskatgn scnrprarne glvvqytndn gitwhllrel dfmsylepqv
     1561 vsidlprdak tpatafrwwq pqhgkhsaqw alddvligmn dssqtgfqdk fdgtmdlqas
     1621 wyriqggqvd idclsmdtal mfsenigkpr yaetwdfhvs astflqfels mgcskpysns
     1681 hsihlqysln ngrdwhlvte ecvppaigcq hytessiyts erfqnwkrit vylppatnsp
     1741 rtrfrwiqyn yasgvdswai dnvvlatgcp wmcsghgicd agrcvcdrgf ggpycvpvip
     1801 lpsvlkddfn gnlhpdlwpe vygaergnln gdtiksgtal ifkgeglrml vsrdldctnt
     1861 vyiqfsfkfi akgtpershs illqysvngg itwhlidefy ftqttdvlfi niplpytaqs
     1921 natrfrlwqp ynngkkeeiw iiddfiidgn nlknpmilld tfdfgpkedn wffypggnig
     1981 lycpysskga peedsamvfv snevgehsit trdlsvnent iiqfeinigc ttdsssadpv
     2041 klefsrdlga twhlllplcy sssshlsslc stehhpssty yagttqgwrr evihfgklhl
     2101 cglarfrwyq gfyptgsqpv twaidnvyig pqcdemcngh gscingtkci cdpgysgptc
     2161 kistknsdfl kddfegqles drfllvsggk psrkcgimsg gnnlffneeg lrmlmtrdld
     2221 lsqarfvqff mrlgcgkgmp dprsqpvllq yslnggltws llqeflfsns snvgryiale
     2281 ipmkarssst rlrwwqpsen ghfyspwvid qiliggnisg ntvleddftt ldsrkwllhp
     2341 ggtkmpvcgs tgdalvfiek astryvvttd ivvnedsflq idfaascsvt dscyaieley
     2401 svdlglswhp ilrdclptnv ecnkyhlqri lisdtfnkwt ritlplppyt rsqatrfrwh
     2461 qpapfdkqqt waidnvyigd gcidmcsghg kctqdncvcd enwgglycde petplptqlk
     2521 dnfnrspsnq nwltvnggkl stvcgavasg malhfsggcs rmlvtvdlnl tsaefiqfyf
     2581 mygclitpnn rnqgvlleys vnggiswkll meifydqfsk pgfvnillpy daktigtrfr
     2641 wwqpkhdgld qndwaidnvl isgsadqrtv mldtfssapl pqherspada gptgriafdm
     2701 fmedkttvne hwlfhddcsv erfcdspdgv micgshdgre vyavthdltp tegwimqfkv
     2761 svgcktsekl aqnqvhvqys tdfgvswsyl vpqclpadpk csgsvsqpsv ffptkgwkrv
     2821 tyslpenfvg npvrfrfyqq ysdmqwaidn fylgpgclen crghgdclne qcicdpgysg
     2881 pncyltqtlk tflkerfdne eikpdlwmsl eggntctecg ilaedttlyf ggatvrqavt
     2941 qdldlrgakf lqywgrigse nnmttchrpt crkegvlldy sidggiswtl lhemdyqkyi
     3001 svrhdyillp ehaltnttrl rwwqpftisn givvsgpdra qwaldnilig gaeinpsqlv
     3061 dtfddegtsh eenwsfypna vrtagfcgnp sfhlywpnkk kdkthnilss reliiqpgym
     3121 mqfkivvgce atscgdlhsv mleytkdart dswqlvqthc lpsssnsigc spfqfheati
     3181 ynsvnssawr ritiqlpdhv sssatqfrwi qkgeelekqs waidhvyige acpklcsghg
     3241 ycttgaicic degyqgddcs vfshdlpsyi kdnfeservt einwetiqgg vigngcgqla
     3301 pyahgdslyf ngcqirqavt kpldltrask imfvlqigsv sqtdscntnl sdpntvdkav
     3361 llqysvnngi twqviaqhqp kdfiqaqrvs ynvplearmk gvllrwwqpr hngtghdqwa
     3421 ldhvevvltr kqnymmnfsr qhglrhfynr rrrslrryp
//
LOCUS       XP_053927450             700 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 168 isoform X1 [Cuculus canorus].
ACCESSION   XP_053927450
VERSION     XP_053927450.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071475.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..700
                     /product="transmembrane protein 168 isoform X1"
                     /calculated_mol_wt=79525
     Region          17..698
                     /region_name="TMEM168"
                     /note="Transmembrane (TMEM) protein family 168; cd21494"
                     /db_xref="CDD:411069"
     Region          35..57
                     /region_name="putative TM helix"
                     /note="putative TM helix [structural motif]"
                     /db_xref="CDD:411069"
     Region          63..85
                     /region_name="putative TM helix"
                     /note="putative TM helix [structural motif]"
                     /db_xref="CDD:411069"
     Region          92..109
                     /region_name="putative TM helix"
                     /note="putative TM helix [structural motif]"
                     /db_xref="CDD:411069"
     Region          170..192
                     /region_name="putative TM helix"
                     /note="putative TM helix [structural motif]"
                     /db_xref="CDD:411069"
     Region          199..219
                     /region_name="putative TM helix"
                     /note="putative TM helix [structural motif]"
                     /db_xref="CDD:411069"
     Region          229..251
                     /region_name="putative TM helix"
                     /note="putative TM helix [structural motif]"
                     /db_xref="CDD:411069"
     Region          264..286
                     /region_name="putative TM helix"
                     /note="putative TM helix [structural motif]"
                     /db_xref="CDD:411069"
     Region          301..323
                     /region_name="putative TM helix"
                     /note="putative TM helix [structural motif]"
                     /db_xref="CDD:411069"
     Region          362..381
                     /region_name="putative TM helix"
                     /note="putative TM helix [structural motif]"
                     /db_xref="CDD:411069"
     CDS             1..700
                     /gene="TMEM168"
                     /coded_by="XM_054071475.1:227..2329"
                     /db_xref="GeneID:104064333"
ORIGIN      
        1 mckslrycvs hclyaamarl eeankevnmh ssirylgyla rinllvaicm glyvrwekta
       61 dalilvifil glfvlgiasi lyyyfsmeaa slslsnlwfg fllgllcfln nsafktdvke
      121 eatkylllsa ivlrilcafv ericgcihhr ptllttvefl elvgfaiast tmlveksmsi
      181 illvialaml iidlrmksfl aipnlaifga iasllffpsl qiptnpfala cffsclisdp
      241 lldiyfsgls vterwqpyly rgkicrrlsv isvavielif filaafklwd ldlwyfvipg
      301 fsifgifwmi chviffitlw gfhtklndch kvyythraen nsldrvmask gmrhfclise
      361 qlvffslvat avlgavswqp tngifmsafl ivlplesmah glfhelgncl ggtcvgyavv
      421 vptnfcspdg qptllppehv qelnlrstgm lnaiqrffay hmietygcdy stsgltfdtl
      481 hskiksflel rttdgprhdt yilyysghsh stgewalagg dalrldtlle wwreknstfc
      541 srliiildce nsrpwvkevr kvndqyvavq gaemakvvdv eeadppqlgd ftrqwveync
      601 npnsniswse kgrtvkavyg vskrwtdytl hlptgsdvak hwmiyfprit yplvhlanwf
      661 cglnlfwvck acfrclkrlk mnwflptvld tgqgfklvks
//
LOCUS       XP_053927458             565 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 168 isoform X2 [Cuculus canorus].
ACCESSION   XP_053927458
VERSION     XP_053927458.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071483.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..565
                     /product="transmembrane protein 168 isoform X2"
                     /calculated_mol_wt=63522
     Region          17..>542
                     /region_name="TMEM168"
                     /note="Transmembrane (TMEM) protein family 168; cd21494"
                     /db_xref="CDD:411069"
     Region          35..57
                     /region_name="putative TM helix"
                     /note="putative TM helix [structural motif]"
                     /db_xref="CDD:411069"
     Region          63..85
                     /region_name="putative TM helix"
                     /note="putative TM helix [structural motif]"
                     /db_xref="CDD:411069"
     Region          92..109
                     /region_name="putative TM helix"
                     /note="putative TM helix [structural motif]"
                     /db_xref="CDD:411069"
     Region          170..192
                     /region_name="putative TM helix"
                     /note="putative TM helix [structural motif]"
                     /db_xref="CDD:411069"
     Region          199..219
                     /region_name="putative TM helix"
                     /note="putative TM helix [structural motif]"
                     /db_xref="CDD:411069"
     Region          229..251
                     /region_name="putative TM helix"
                     /note="putative TM helix [structural motif]"
                     /db_xref="CDD:411069"
     Region          264..286
                     /region_name="putative TM helix"
                     /note="putative TM helix [structural motif]"
                     /db_xref="CDD:411069"
     Region          301..323
                     /region_name="putative TM helix"
                     /note="putative TM helix [structural motif]"
                     /db_xref="CDD:411069"
     Region          362..381
                     /region_name="putative TM helix"
                     /note="putative TM helix [structural motif]"
                     /db_xref="CDD:411069"
     CDS             1..565
                     /gene="TMEM168"
                     /coded_by="XM_054071483.1:227..1924"
                     /db_xref="GeneID:104064333"
ORIGIN      
        1 mckslrycvs hclyaamarl eeankevnmh ssirylgyla rinllvaicm glyvrwekta
       61 dalilvifil glfvlgiasi lyyyfsmeaa slslsnlwfg fllgllcfln nsafktdvke
      121 eatkylllsa ivlrilcafv ericgcihhr ptllttvefl elvgfaiast tmlveksmsi
      181 illvialaml iidlrmksfl aipnlaifga iasllffpsl qiptnpfala cffsclisdp
      241 lldiyfsgls vterwqpyly rgkicrrlsv isvavielif filaafklwd ldlwyfvipg
      301 fsifgifwmi chviffitlw gfhtklndch kvyythraen nsldrvmask gmrhfclise
      361 qlvffslvat avlgavswqp tngifmsafl ivlplesmah glfhelgncl ggtcvgyavv
      421 vptnfcspdg qptllppehv qelnlrstgm lnaiqrffay hmietygcdy stsgltfdtl
      481 hskiksflel rttdgprhdt yilyysghsh stgewalagc nffhpekkss ataslqlipl
      541 wrpaaptsre dqlktsvipv qevml
//
LOCUS       XP_053927473             197 aa            linear   VRT 09-MAR-2023
DEFINITION  death domain-containing protein CRADD [Cuculus canorus].
ACCESSION   XP_053927473
VERSION     XP_053927473.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071498.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..197
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..197
                     /product="death domain-containing protein CRADD"
                     /calculated_mol_wt=22464
     Region          1..94
                     /region_name="CARD_RAIDD"
                     /note="Caspase activation and recruitment domain of
                     RIP-associated ICH-1 homologous protein with a death
                     domain; cd08327"
                     /db_xref="CDD:260037"
     Region          114..196
                     /region_name="Death_RAIDD"
                     /note="Death domain of RIP-associated ICH-1 homologous
                     protein with a death domain; cd08319"
                     /db_xref="CDD:260031"
     Site            order(115..116,119..120,123,150,153,159..160,163,166..168,
                     170..171)
                     /site_type="other"
                     /note="RAIDD-PIDD interaction site [polypeptide binding]"
                     /db_xref="CDD:260031"
     Site            order(115..116,119,123,150,152..153,159,163)
                     /site_type="other"
                     /note="Type I interaction site [polypeptide binding]"
                     /db_xref="CDD:260031"
     Site            order(141,144..145,148..149)
                     /site_type="other"
                     /note="Type III interaction site [polypeptide binding]"
                     /db_xref="CDD:260031"
     Site            order(167..168,171)
                     /site_type="other"
                     /note="Type II interaction site [polypeptide binding]"
                     /db_xref="CDD:260031"
     CDS             1..197
                     /gene="CRADD"
                     /coded_by="XM_054071498.1:146..739"
                     /db_xref="GeneID:104058416"
ORIGIN      
        1 mdardkqllr slrlelctev lvdgvviqyl yqegiltdsh vqeiksqtts qrrtmmlldi
       61 lptrgpkafd vfldslqefp wvkeklmvkr kemtvqapad iteiapcilk tsptdqqlnk
      121 larrlgpewe hivlclglsh sdiyrckvnh phnlqsqvva afvlwrqrlg kkatiqslqa
      181 glmaeevdps viqymle
//
LOCUS       XP_053927485             189 aa            linear   VRT 09-MAR-2023
DEFINITION  suppressor of cytokine signaling 2 [Cuculus canorus].
ACCESSION   XP_053927485
VERSION     XP_053927485.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071510.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..189
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..189
                     /product="suppressor of cytokine signaling 2"
                     /calculated_mol_wt=21619
     Region          34..136
                     /region_name="SH2_SOCS2"
                     /note="Src homology 2 (SH2) domain found in suppressor of
                     cytokine signaling (SOCS) proteins; cd10383"
                     /db_xref="CDD:198246"
     Site            order(49,67,69,77,90)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:198246"
     Site            order(100,102,123)
                     /site_type="other"
                     /note="hydrophobic binding pocket [polypeptide binding]"
                     /db_xref="CDD:198246"
     Region          149..189
                     /region_name="SOCS_SOCS2"
                     /note="SOCS (suppressors of cytokine signaling) box of
                     SOCS2-like proteins. Together with CIS1, the CIS/SOCS
                     family of proteins is characterized by the presence of a
                     C-terminal SOCS box and a central SH2 domain. SOCS2 has
                     recently been shown to regulate...; cd03736"
                     /db_xref="CDD:239705"
     Site            order(150..155,161,166,172,177)
                     /site_type="active"
                     /note="elongin B/C interaction [active]"
                     /db_xref="CDD:239705"
     CDS             1..189
                     /gene="SOCS2"
                     /coded_by="XM_054071510.1:250..819"
                     /db_xref="GeneID:104058417"
ORIGIN      
        1 mtlrsggslr ssegawerpg aaaepreeql daamdelrra gwywgnmtva eakerlqdap
       61 egtflvrdss hseylltisv ktsagptnlr ieyqdgkfrl dsitcvrsrl kqfnsvvhli
      121 eyyvlmckdr tetpsngtvh lylnkplyts apslqhrcri tinkctnqiw elplptrlke
      181 ylkeyqyqv
//
LOCUS       XP_053927493             189 aa            linear   VRT 09-MAR-2023
DEFINITION  suppressor of cytokine signaling 2 [Cuculus canorus].
ACCESSION   XP_053927493
VERSION     XP_053927493.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071518.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..189
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..189
                     /product="suppressor of cytokine signaling 2"
                     /calculated_mol_wt=21619
     Region          34..136
                     /region_name="SH2_SOCS2"
                     /note="Src homology 2 (SH2) domain found in suppressor of
                     cytokine signaling (SOCS) proteins; cd10383"
                     /db_xref="CDD:198246"
     Site            order(49,67,69,77,90)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:198246"
     Site            order(100,102,123)
                     /site_type="other"
                     /note="hydrophobic binding pocket [polypeptide binding]"
                     /db_xref="CDD:198246"
     Region          149..189
                     /region_name="SOCS_SOCS2"
                     /note="SOCS (suppressors of cytokine signaling) box of
                     SOCS2-like proteins. Together with CIS1, the CIS/SOCS
                     family of proteins is characterized by the presence of a
                     C-terminal SOCS box and a central SH2 domain. SOCS2 has
                     recently been shown to regulate...; cd03736"
                     /db_xref="CDD:239705"
     Site            order(150..155,161,166,172,177)
                     /site_type="active"
                     /note="elongin B/C interaction [active]"
                     /db_xref="CDD:239705"
     CDS             1..189
                     /gene="SOCS2"
                     /coded_by="XM_054071518.1:166..735"
                     /db_xref="GeneID:104058417"
ORIGIN      
        1 mtlrsggslr ssegawerpg aaaepreeql daamdelrra gwywgnmtva eakerlqdap
       61 egtflvrdss hseylltisv ktsagptnlr ieyqdgkfrl dsitcvrsrl kqfnsvvhli
      121 eyyvlmckdr tetpsngtvh lylnkplyts apslqhrcri tinkctnqiw elplptrlke
      181 ylkeyqyqv
//
LOCUS       XP_053927505             152 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin-conjugating enzyme E2 N [Cuculus canorus].
ACCESSION   XP_053927505
VERSION     XP_053927505.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071530.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..152
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..152
                     /product="ubiquitin-conjugating enzyme E2 N"
                     /calculated_mol_wt=17007
     Region          4..147
                     /region_name="UBCc_UBE2N"
                     /note="Ubiquitin-conjugating enzyme E2, catalytic (UBCc)
                     domain of ubiquitin-conjugating enzyme E2 N and related
                     proteins; cd23813"
                     /db_xref="CDD:467433"
     CDS             1..152
                     /gene="UBE2N"
                     /coded_by="XM_054071530.1:92..550"
                     /db_xref="GeneID:104058435"
ORIGIN      
        1 maglprriik etqrllaepv pgikaepdes naryfhvvia gpqdspfegg tfklelflpe
       61 eypmaapkvr fmtkiyhpnv dklgricldi lkdkwspalq irtvllsiqa llsapnpddp
      121 landvaeqwk tneaqaieta rawtrlyamn ni
//
LOCUS       XP_009558218             146 aa            linear   VRT 09-MAR-2023
DEFINITION  39S ribosomal protein L42, mitochondrial [Cuculus canorus].
ACCESSION   XP_009558218
VERSION     XP_009558218.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009559923.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..146
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..146
                     /product="39S ribosomal protein L42, mitochondrial"
                     /calculated_mol_wt=17072
     Region          51..146
                     /region_name="MRP-S32"
                     /note="Mitochondrial 28S ribosomal protein S32; pfam10210"
                     /db_xref="CDD:462999"
     CDS             1..146
                     /gene="MRPL42"
                     /coded_by="XM_009559923.2:196..636"
                     /db_xref="GeneID:104058418"
ORIGIN      
        1 marslrnvws sffwmhsvat ckqaplqnga vyhacrksty svlpedynck velavtsdlk
       61 tivcyhpsle ipyehtkpip rpdpvnnkee tldqvlksrl nekelknnrg ltieelskmf
      121 yttkhrwypv gqyhrrrknp nppkdr
//
LOCUS       XP_053927509            1233 aa            linear   VRT 09-MAR-2023
DEFINITION  diacylglycerol kinase eta isoform X1 [Cuculus canorus].
ACCESSION   XP_053927509
VERSION     XP_053927509.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071534.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1233
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1233
                     /product="diacylglycerol kinase eta isoform X1"
                     /calculated_mol_wt=137304
     Region          74..170
                     /region_name="PH_DGK_type2"
                     /note="Type 2 Diacylglycerol kinase Pleckstrin homology
                     (PH) domain; cd13274"
                     /db_xref="CDD:270093"
     Region          154..239
                     /region_name="C1_DGKeta_rpt1"
                     /note="first protein kinase C conserved region 1 (C1
                     domain) found in diacylglycerol kinase eta (DAG kinase
                     eta) and similar proteins; cd20848"
                     /db_xref="CDD:410398"
     Region          250..311
                     /region_name="C1_DGKeta_rpt2"
                     /note="second protein kinase C conserved region 1 (C1
                     domain) found in diacylglycerol kinase eta (DAG kinase
                     eta) and similar proteins; cd20894"
                     /db_xref="CDD:410444"
     Region          342..464
                     /region_name="DAGKc"
                     /note="Diacylglycerol kinase catalytic domain (presumed);
                     smart00046"
                     /db_xref="CDD:214487"
     Region          782..939
                     /region_name="DAGKa"
                     /note="Diacylglycerol kinase accessory domain (presumed);
                     smart00045"
                     /db_xref="CDD:214486"
     Region          1160..1224
                     /region_name="SAM_DGK-eta"
                     /note="SAM domain of diacylglycerol kinase eta; cd09576"
                     /db_xref="CDD:188975"
     Site            order(1187..1191,1197..1199,1201..1202,1205)
                     /site_type="other"
                     /note="putative homooligomer interface ML [polypeptide
                     binding]"
                     /db_xref="CDD:188975"
     Site            order(1200,1204,1209..1213,1215..1216,1219)
                     /site_type="other"
                     /note="putative homooligomer interface EH [polypeptide
                     binding]"
                     /db_xref="CDD:188975"
     CDS             1..1233
                     /gene="DGKH"
                     /coded_by="XM_054071534.1:18..3719"
                     /db_xref="GeneID:104056515"
ORIGIN      
        1 meeqgcpsys arspaweeld sgkmagaeas gagipqqppa paddssdseg ehegpqklir
       61 kvstsgqirs ktsikeglll kqtssfqrwk kryfklrgrt lyyakdsksl ifdevdlsda
      121 svaesstknv nnsftiitpf rrlilcaenr kemedwissl ksvqsrehye taqfnvehfs
      181 gmhnwyacsh arptfcnvcr eslsgvtshg lscevckfka hkrcavratn nckwttlasi
      241 gkdiiededg iamphqwleg nlpvsakcav cdktcgsvlr lqdwkclwck amvhtackdl
      301 yprkcplgqc kvsiipptal nsidsdgfwk atcppscasp llvfvnsksg dnqgvkflrr
      361 fkqslnpaqv fdlmnggphl glrlfqkfdn frilvcggdg svgwvlseid klslhkqcql
      421 gvlplgtgnd larvlgwggs cdddtqlpqi leklerastk mldrwsimsy elklpvkpsi
      481 lpvtaeesee cqisayedsv aahlakilns dqhsvvissa kilcetvkdf vakigktyek
      541 pmenaeeada maikctelne kldlllqalh teaqaapmlt giaspiveee aeefsseesl
      601 seskeqlvec vsksstqklf kpreqlmlra nslkkavrqi ieqaekvvde qnahseeqvn
      661 qspveyskel deskeeekee dtkelespst ktaprspdrr tsrgvhsqtg sfsapalaas
      721 kenlpvlntr iicpglragl aasiagssii skmllanidp fgatpfidpd pdslegysek
      781 cvmnnyfgig ldakislefn nkreehpekc rsrtknmmwy gvlgtkellq rtyknleqkv
      841 qlecdgqyip lpslqgiavl nipsyaggtn fwggtkeddi fgapsfddki levvavfgsm
      901 qmavsrvikl qhhriaqcrs vkitilgdeg vpvqvdgeaw iqppgvikii hknraqmltr
      961 drafentlks wedkqkydsc kpvirsplyp qqavelatee evaqiqlcsq aaeelitric
     1021 eaakihglle qelahavnac shalnkanpr fpesltrnta meiavnvkal hnetesllvg
     1081 rvplqleaph eellsdalhs veielrklae ipwlyyvfqp nddedppldy akrnnrstvf
     1141 rivpkfkkek vqkhktspqp vqkwgtdeva awldllslge ykeifishdi rgsellhler
     1201 rdlkdlgitk vghmkrilqg ikelgkntpl sev
//
LOCUS       XP_053927519            1177 aa            linear   VRT 09-MAR-2023
DEFINITION  diacylglycerol kinase eta isoform X2 [Cuculus canorus].
ACCESSION   XP_053927519
VERSION     XP_053927519.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071544.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1177
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1177
                     /product="diacylglycerol kinase eta isoform X2"
                     /calculated_mol_wt=130617
     Region          74..170
                     /region_name="PH_DGK_type2"
                     /note="Type 2 Diacylglycerol kinase Pleckstrin homology
                     (PH) domain; cd13274"
                     /db_xref="CDD:270093"
     Region          154..239
                     /region_name="C1_DGKeta_rpt1"
                     /note="first protein kinase C conserved region 1 (C1
                     domain) found in diacylglycerol kinase eta (DAG kinase
                     eta) and similar proteins; cd20848"
                     /db_xref="CDD:410398"
     Region          250..311
                     /region_name="C1_DGKeta_rpt2"
                     /note="second protein kinase C conserved region 1 (C1
                     domain) found in diacylglycerol kinase eta (DAG kinase
                     eta) and similar proteins; cd20894"
                     /db_xref="CDD:410444"
     Region          342..464
                     /region_name="DAGKc"
                     /note="Diacylglycerol kinase catalytic domain (presumed);
                     smart00046"
                     /db_xref="CDD:214487"
     Region          782..939
                     /region_name="DAGKa"
                     /note="Diacylglycerol kinase accessory domain (presumed);
                     smart00045"
                     /db_xref="CDD:214486"
     CDS             1..1177
                     /gene="DGKH"
                     /coded_by="XM_054071544.1:18..3551"
                     /db_xref="GeneID:104056515"
ORIGIN      
        1 meeqgcpsys arspaweeld sgkmagaeas gagipqqppa paddssdseg ehegpqklir
       61 kvstsgqirs ktsikeglll kqtssfqrwk kryfklrgrt lyyakdsksl ifdevdlsda
      121 svaesstknv nnsftiitpf rrlilcaenr kemedwissl ksvqsrehye taqfnvehfs
      181 gmhnwyacsh arptfcnvcr eslsgvtshg lscevckfka hkrcavratn nckwttlasi
      241 gkdiiededg iamphqwleg nlpvsakcav cdktcgsvlr lqdwkclwck amvhtackdl
      301 yprkcplgqc kvsiipptal nsidsdgfwk atcppscasp llvfvnsksg dnqgvkflrr
      361 fkqslnpaqv fdlmnggphl glrlfqkfdn frilvcggdg svgwvlseid klslhkqcql
      421 gvlplgtgnd larvlgwggs cdddtqlpqi leklerastk mldrwsimsy elklpvkpsi
      481 lpvtaeesee cqisayedsv aahlakilns dqhsvvissa kilcetvkdf vakigktyek
      541 pmenaeeada maikctelne kldlllqalh teaqaapmlt giaspiveee aeefsseesl
      601 seskeqlvec vsksstqklf kpreqlmlra nslkkavrqi ieqaekvvde qnahseeqvn
      661 qspveyskel deskeeekee dtkelespst ktaprspdrr tsrgvhsqtg sfsapalaas
      721 kenlpvlntr iicpglragl aasiagssii skmllanidp fgatpfidpd pdslegysek
      781 cvmnnyfgig ldakislefn nkreehpekc rsrtknmmwy gvlgtkellq rtyknleqkv
      841 qlecdgqyip lpslqgiavl nipsyaggtn fwggtkeddi fgapsfddki levvavfgsm
      901 qmavsrvikl qhhriaqcrs vkitilgdeg vpvqvdgeaw iqppgvikii hknraqmltr
      961 drafentlks wedkqkydsc kpvirsplyp qqavelatee evaqiqlcsq aaeelitric
     1021 eaakihglle qelahavnac shalnkanpr fpesltrnta meiavnvkal hnetesllvg
     1081 rvplqleaph eellsdalhs veielrklae ipwlyyvfqp nddedppldy akrnnrstvf
     1141 rivpkfkkek vqkhktspqp gpgdnesgsy eanspgn
//
LOCUS       XP_053927528            1052 aa            linear   VRT 09-MAR-2023
DEFINITION  diacylglycerol kinase eta isoform X3 [Cuculus canorus].
ACCESSION   XP_053927528
VERSION     XP_053927528.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071553.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1052
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1052
                     /product="diacylglycerol kinase eta isoform X3"
                     /calculated_mol_wt=117049
     Region          <1..62
                     /region_name="C1"
                     /note="protein kinase C conserved region 1 (C1 domain)
                     superfamily; cl00040"
                     /db_xref="CDD:412127"
     Region          69..130
                     /region_name="C1_DGKeta_rpt2"
                     /note="second protein kinase C conserved region 1 (C1
                     domain) found in diacylglycerol kinase eta (DAG kinase
                     eta) and similar proteins; cd20894"
                     /db_xref="CDD:410444"
     Region          161..283
                     /region_name="DAGKc"
                     /note="Diacylglycerol kinase catalytic domain (presumed);
                     smart00046"
                     /db_xref="CDD:214487"
     Region          601..758
                     /region_name="DAGKa"
                     /note="Diacylglycerol kinase accessory domain (presumed);
                     smart00045"
                     /db_xref="CDD:214486"
     Region          979..1043
                     /region_name="SAM_DGK-eta"
                     /note="SAM domain of diacylglycerol kinase eta; cd09576"
                     /db_xref="CDD:188975"
     Site            order(1006..1010,1016..1018,1020..1021,1024)
                     /site_type="other"
                     /note="putative homooligomer interface ML [polypeptide
                     binding]"
                     /db_xref="CDD:188975"
     Site            order(1019,1023,1028..1032,1034..1035,1038)
                     /site_type="other"
                     /note="putative homooligomer interface EH [polypeptide
                     binding]"
                     /db_xref="CDD:188975"
     CDS             1..1052
                     /gene="DGKH"
                     /coded_by="XM_054071553.1:119..3277"
                     /db_xref="GeneID:104056515"
ORIGIN      
        1 mhnwyacsha rptfcnvcre slsgvtshgl scevckfkah krcavratnn ckwttlasig
       61 kdiiededgi amphqwlegn lpvsakcavc dktcgsvlrl qdwkclwcka mvhtackdly
      121 prkcplgqck vsiipptaln sidsdgfwka tcppscaspl lvfvnsksgd nqgvkflrrf
      181 kqslnpaqvf dlmnggphlg lrlfqkfdnf rilvcggdgs vgwvlseidk lslhkqcqlg
      241 vlplgtgndl arvlgwggsc dddtqlpqil eklerastkm ldrwsimsye lklpvkpsil
      301 pvtaeeseec qisayedsva ahlakilnsd qhsvvissak ilcetvkdfv akigktyekp
      361 menaeeadam aikctelnek ldlllqalht eaqaapmltg iaspiveeea eefsseesls
      421 eskeqlvecv sksstqklfk preqlmlran slkkavrqii eqaekvvdeq nahseeqvnq
      481 spveyskeld eskeeekeed tkelespstk taprspdrrt srgvhsqtgs fsapalaask
      541 enlpvlntri icpglragla asiagssiis kmllanidpf gatpfidpdp dslegysekc
      601 vmnnyfgigl dakislefnn kreehpekcr srtknmmwyg vlgtkellqr tyknleqkvq
      661 lecdgqyipl pslqgiavln ipsyaggtnf wggtkeddif gapsfddkil evvavfgsmq
      721 mavsrviklq hhriaqcrsv kitilgdegv pvqvdgeawi qppgvikiih knraqmltrd
      781 rafentlksw edkqkydsck pvirsplypq qavelateee vaqiqlcsqa aeelitrice
      841 aakihglleq elahavnacs halnkanprf pesltrntam eiavnvkalh netesllvgr
      901 vplqleaphe ellsdalhsv eielrklaei pwlyyvfqpn ddedppldya krnnrstvfr
      961 ivpkfkkekv qkhktspqpv qkwgtdevaa wldllslgey keifishdir gsellhlerr
     1021 dlkdlgitkv ghmkrilqgi kelgkntpls ev
//
LOCUS       XP_053927537            1081 aa            linear   VRT 09-MAR-2023
DEFINITION  diacylglycerol kinase eta isoform X4 [Cuculus canorus].
ACCESSION   XP_053927537
VERSION     XP_053927537.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071562.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1081
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1081
                     /product="diacylglycerol kinase eta isoform X4"
                     /calculated_mol_wt=120473
     Region          2..87
                     /region_name="C1_DGKeta_rpt1"
                     /note="first protein kinase C conserved region 1 (C1
                     domain) found in diacylglycerol kinase eta (DAG kinase
                     eta) and similar proteins; cd20848"
                     /db_xref="CDD:410398"
     Region          98..159
                     /region_name="C1_DGKeta_rpt2"
                     /note="second protein kinase C conserved region 1 (C1
                     domain) found in diacylglycerol kinase eta (DAG kinase
                     eta) and similar proteins; cd20894"
                     /db_xref="CDD:410444"
     Region          190..312
                     /region_name="DAGKc"
                     /note="Diacylglycerol kinase catalytic domain (presumed);
                     smart00046"
                     /db_xref="CDD:214487"
     Region          630..787
                     /region_name="DAGKa"
                     /note="Diacylglycerol kinase accessory domain (presumed);
                     smart00045"
                     /db_xref="CDD:214486"
     Region          1008..1072
                     /region_name="SAM_DGK-eta"
                     /note="SAM domain of diacylglycerol kinase eta; cd09576"
                     /db_xref="CDD:188975"
     Site            order(1035..1039,1045..1047,1049..1050,1053)
                     /site_type="other"
                     /note="putative homooligomer interface ML [polypeptide
                     binding]"
                     /db_xref="CDD:188975"
     Site            order(1048,1052,1057..1061,1063..1064,1067)
                     /site_type="other"
                     /note="putative homooligomer interface EH [polypeptide
                     binding]"
                     /db_xref="CDD:188975"
     CDS             1..1081
                     /gene="DGKH"
                     /coded_by="XM_054071562.1:315..3560"
                     /db_xref="GeneID:104056515"
ORIGIN      
        1 medwisslks vqsrehyeta qfnvehfsgm hnwyacshar ptfcnvcres lsgvtshgls
       61 cevckfkahk rcavratnnc kwttlasigk diiededgia mphqwlegnl pvsakcavcd
      121 ktcgsvlrlq dwkclwckam vhtackdlyp rkcplgqckv siipptalns idsdgfwkat
      181 cppscaspll vfvnsksgdn qgvkflrrfk qslnpaqvfd lmnggphlgl rlfqkfdnfr
      241 ilvcggdgsv gwvlseidkl slhkqcqlgv lplgtgndla rvlgwggscd ddtqlpqile
      301 klerastkml drwsimsyel klpvkpsilp vtaeeseecq isayedsvaa hlakilnsdq
      361 hsvvissaki lcetvkdfva kigktyekpm enaeeadama ikctelnekl dlllqalhte
      421 aqaapmltgi aspiveeeae efsseeslse skeqlvecvs ksstqklfkp reqlmlrans
      481 lkkavrqiie qaekvvdeqn ahseeqvnqs pveyskelde skeeekeedt kelespstkt
      541 aprspdrrts rgvhsqtgsf sapalaaske nlpvlntrii cpglraglaa siagssiisk
      601 mllanidpfg atpfidpdpd slegysekcv mnnyfgigld akislefnnk reehpekcrs
      661 rtknmmwygv lgtkellqrt yknleqkvql ecdgqyiplp slqgiavlni psyaggtnfw
      721 ggtkeddifg apsfddkile vvavfgsmqm avsrviklqh hriaqcrsvk itilgdegvp
      781 vqvdgeawiq ppgvikiihk nraqmltrdr afentlkswe dkqkydsckp virsplypqq
      841 avelateeev aqiqlcsqaa eelitricea akihglleqe lahavnacsh alnkanprfp
      901 esltrntame iavnvkalhn etesllvgrv plqleaphee llsdalhsve ielrklaeip
      961 wlyyvfqpnd dedppldyak rnnrstvfri vpkfkkekvq khktspqpvq kwgtdevaaw
     1021 ldllslgeyk eifishdirg sellhlerrd lkdlgitkvg hmkrilqgik elgkntplse
     1081 v
//
LOCUS       XP_009556069             925 aa            linear   VRT 09-MAR-2023
DEFINITION  diacylglycerol kinase eta isoform X5 [Cuculus canorus].
ACCESSION   XP_009556069
VERSION     XP_009556069.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557774.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556069.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..925
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..925
                     /product="diacylglycerol kinase eta isoform X5"
                     /calculated_mol_wt=102190
     Region          <37..59
                     /region_name="C1"
                     /note="protein kinase C conserved region 1 (C1 domain)
                     superfamily; cl00040"
                     /db_xref="CDD:412127"
     Region          90..212
                     /region_name="DAGKc"
                     /note="Diacylglycerol kinase catalytic domain (presumed);
                     smart00046"
                     /db_xref="CDD:214487"
     Region          530..687
                     /region_name="DAGKa"
                     /note="Diacylglycerol kinase accessory domain (presumed);
                     smart00045"
                     /db_xref="CDD:214486"
     CDS             1..925
                     /gene="DGKH"
                     /coded_by="XM_009557774.2:1..2778"
                     /db_xref="GeneID:104056515"
ORIGIN      
        1 mwnisqgcit gtpapmpdlp svtcverasl eslltaclvk vhtackdlyp rkcplgqckv
       61 siipptalns idsdgfwkat cppscaspll vfvnsksgdn qgvkflrrfk qslnpaqvfd
      121 lmnggphlgl rlfqkfdnfr ilvcggdgsv gwvlseidkl slhkqcqlgv lplgtgndla
      181 rvlgwggscd ddtqlpqile klerastkml drwsimsyel klpvkpsilp vtaeeseecq
      241 isayedsvaa hlakilnsdq hsvvissaki lcetvkdfva kigktyekpm enaeeadama
      301 ikctelnekl dlllqalhte aqaapmltgi aspiveeeae efsseeslse skeqlvecvs
      361 ksstqklfkp reqlmlrans lkkavrqiie qaekvvdeqn ahseeqvnqs pveyskelde
      421 skeeekeedt kelespstkt aprspdrrts rgvhsqtgsf sapalaaske nlpvlntrii
      481 cpglraglaa siagssiisk mllanidpfg atpfidpdpd slegysekcv mnnyfgigld
      541 akislefnnk reehpekcrs rtknmmwygv lgtkellqrt yknleqkvql ecdgqyiplp
      601 slqgiavlni psyaggtnfw ggtkeddifg apsfddkile vvavfgsmqm avsrviklqh
      661 hriaqcrsvk itilgdegvp vqvdgeawiq ppgvikiihk nraqmltrdr afentlkswe
      721 dkqkydsckp virsplypqq avelateeev aqiqlcsqaa eelitricea akihglleqe
      781 lahavnacsh alnkanprfp esltrntame iavnvkalhn etesllvgrv plqleaphee
      841 llsdalhsve ielrklaeip wlyyvfqpnd dedppldyak rnnrstvfri vpkfkkekvq
      901 khktspqpgp gdnesgsyea nspgn
//
LOCUS       XP_053927561             231 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane gamma-carboxyglutamic acid protein 1 [Cuculus
            canorus].
ACCESSION   XP_053927561
VERSION     XP_053927561.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071586.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..231
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..231
                     /product="transmembrane gamma-carboxyglutamic acid protein
                     1"
                     /calculated_mol_wt=25894
     Region          2..65
                     /region_name="GLA"
                     /note="Domain containing Gla (gamma-carboxyglutamate)
                     residues; smart00069"
                     /db_xref="CDD:214503"
     CDS             1..231
                     /gene="PRRG1"
                     /coded_by="XM_054071586.1:305..1000"
                     /db_xref="GeneID:104057219"
ORIGIN      
        1 mdsvfltedk ansilkrypr antfweelkq gdiehecree icsyeearea feneertkef
       61 wkvyknglqg esntghtwys fylafpliig lfvilivifv iwrclfkkkm rrqsvyvhrg
      121 aheamgdgav adgrgplppp lsivhspqee mfevsglspg glsftdgrsd sistrlsncd
      181 pppsyeeatg eisvrsgete qhldpppqye divnsssana ialspivtst k
//
LOCUS       XP_009556853             231 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane gamma-carboxyglutamic acid protein 1 [Cuculus
            canorus].
ACCESSION   XP_009556853
VERSION     XP_009556853.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009558558.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..231
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..231
                     /product="transmembrane gamma-carboxyglutamic acid protein
                     1"
                     /calculated_mol_wt=25894
     Region          2..65
                     /region_name="GLA"
                     /note="Domain containing Gla (gamma-carboxyglutamate)
                     residues; smart00069"
                     /db_xref="CDD:214503"
     CDS             1..231
                     /gene="PRRG1"
                     /coded_by="XM_009558558.2:62..757"
                     /db_xref="GeneID:104057219"
ORIGIN      
        1 mdsvfltedk ansilkrypr antfweelkq gdiehecree icsyeearea feneertkef
       61 wkvyknglqg esntghtwys fylafpliig lfvilivifv iwrclfkkkm rrqsvyvhrg
      121 aheamgdgav adgrgplppp lsivhspqee mfevsglspg glsftdgrsd sistrlsncd
      181 pppsyeeatg eisvrsgete qhldpppqye divnsssana ialspivtst k
//
LOCUS       XP_053927578             231 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane gamma-carboxyglutamic acid protein 1 [Cuculus
            canorus].
ACCESSION   XP_053927578
VERSION     XP_053927578.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071603.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..231
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..231
                     /product="transmembrane gamma-carboxyglutamic acid protein
                     1"
                     /calculated_mol_wt=25894
     Region          2..65
                     /region_name="GLA"
                     /note="Domain containing Gla (gamma-carboxyglutamate)
                     residues; smart00069"
                     /db_xref="CDD:214503"
     CDS             1..231
                     /gene="PRRG1"
                     /coded_by="XM_054071603.1:60..755"
                     /db_xref="GeneID:104057219"
ORIGIN      
        1 mdsvfltedk ansilkrypr antfweelkq gdiehecree icsyeearea feneertkef
       61 wkvyknglqg esntghtwys fylafpliig lfvilivifv iwrclfkkkm rrqsvyvhrg
      121 aheamgdgav adgrgplppp lsivhspqee mfevsglspg glsftdgrsd sistrlsncd
      181 pppsyeeatg eisvrsgete qhldpppqye divnsssana ialspivtst k
//
LOCUS       XP_053927589             673 aa            linear   VRT 09-MAR-2023
DEFINITION  A-kinase anchor protein 17A isoform X1 [Cuculus canorus].
ACCESSION   XP_053927589
VERSION     XP_053927589.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071614.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..673
                     /product="A-kinase anchor protein 17A isoform X1"
                     /calculated_mol_wt=79372
     Region          143..265
                     /region_name="RRM_AKAP17A"
                     /note="RNA recognition motif (RRM) found in A-kinase
                     anchor protein 17A (AKAP-17A) and similar proteins;
                     cd12264"
                     /db_xref="CDD:409708"
     Region          <269..>450
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..673
                     /gene="AKAP17A"
                     /coded_by="XM_054071614.1:549..2570"
                     /db_xref="GeneID:104063723"
ORIGIN      
        1 maaativhdt seavelcapc glylkpitkm tisvalpqlk qpgksisnwe vmerlkamvq
       61 thqfstlris kstmdfirfe gevenkslvk sflacldgkt iklsgfsdil kvraaeykid
      121 fptrhdwdsf frdakdmnet lpgerpdtih leglpckwfa akdsgsekps eevlikvfkk
      181 fgeirnvdip mldpyreemt grnfhtfsfg ghlnfeayvq yreyagfika mnalrgmklm
      241 ykgddgkava cnikvsfdst khlsdasikk rqlerqklqe lekqreeqkr kekeaeerqk
      301 eeerkqrele ehererkree klrkreqkqr drevrrnrkq leklqaeeqk klqekiklee
      361 rklllaqrnl qsirliaell sraktvklle qehneekirl qqleerrrlq eaelkrveee
      421 keralglqrk ekelreklln nllskkmdav dqnkeetets qsdtlktpdg vphtvsssci
      481 tstsgqavtg rlatvsqsem vspesanakc kylngniqkl hitnsercse krssavlssv
      541 pttnqqqksl ysydrhtyrk dshreqdkrs teprrrksrs cssintdesk gkrersrhrr
      601 dasyedekrr kerryyrrss rsysprqsrs prrrsvsprr sryrrtrsre rkrdrrersr
      661 scrsvsrrrr hrs
//
LOCUS       XP_009564270             673 aa            linear   VRT 09-MAR-2023
DEFINITION  A-kinase anchor protein 17A isoform X1 [Cuculus canorus].
ACCESSION   XP_009564270
VERSION     XP_009564270.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565975.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564270.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..673
                     /product="A-kinase anchor protein 17A isoform X1"
                     /calculated_mol_wt=79372
     Region          143..265
                     /region_name="RRM_AKAP17A"
                     /note="RNA recognition motif (RRM) found in A-kinase
                     anchor protein 17A (AKAP-17A) and similar proteins;
                     cd12264"
                     /db_xref="CDD:409708"
     Region          <269..>450
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..673
                     /gene="AKAP17A"
                     /coded_by="XM_009565975.2:807..2828"
                     /db_xref="GeneID:104063723"
ORIGIN      
        1 maaativhdt seavelcapc glylkpitkm tisvalpqlk qpgksisnwe vmerlkamvq
       61 thqfstlris kstmdfirfe gevenkslvk sflacldgkt iklsgfsdil kvraaeykid
      121 fptrhdwdsf frdakdmnet lpgerpdtih leglpckwfa akdsgsekps eevlikvfkk
      181 fgeirnvdip mldpyreemt grnfhtfsfg ghlnfeayvq yreyagfika mnalrgmklm
      241 ykgddgkava cnikvsfdst khlsdasikk rqlerqklqe lekqreeqkr kekeaeerqk
      301 eeerkqrele ehererkree klrkreqkqr drevrrnrkq leklqaeeqk klqekiklee
      361 rklllaqrnl qsirliaell sraktvklle qehneekirl qqleerrrlq eaelkrveee
      421 keralglqrk ekelreklln nllskkmdav dqnkeetets qsdtlktpdg vphtvsssci
      481 tstsgqavtg rlatvsqsem vspesanakc kylngniqkl hitnsercse krssavlssv
      541 pttnqqqksl ysydrhtyrk dshreqdkrs teprrrksrs cssintdesk gkrersrhrr
      601 dasyedekrr kerryyrrss rsysprqsrs prrrsvsprr sryrrtrsre rkrdrrersr
      661 scrsvsrrrr hrs
//
LOCUS       XP_053927605             644 aa            linear   VRT 09-MAR-2023
DEFINITION  A-kinase anchor protein 17A isoform X2 [Cuculus canorus].
ACCESSION   XP_053927605
VERSION     XP_053927605.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071630.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..644
                     /product="A-kinase anchor protein 17A isoform X2"
                     /calculated_mol_wt=76344
     Region          114..236
                     /region_name="RRM_AKAP17A"
                     /note="RNA recognition motif (RRM) found in A-kinase
                     anchor protein 17A (AKAP-17A) and similar proteins;
                     cd12264"
                     /db_xref="CDD:409708"
     Region          <240..>421
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..644
                     /gene="AKAP17A"
                     /coded_by="XM_054071630.1:293..2227"
                     /db_xref="GeneID:104063723"
ORIGIN      
        1 mtisvalpql kqpgksisnw evmerlkamv qthqfstlri skstmdfirf egevenkslv
       61 ksflacldgk tiklsgfsdi lkvraaeyki dfptrhdwds ffrdakdmne tlpgerpdti
      121 hleglpckwf aakdsgsekp seevlikvfk kfgeirnvdi pmldpyreem tgrnfhtfsf
      181 gghlnfeayv qyreyagfik amnalrgmkl mykgddgkav acnikvsfds tkhlsdasik
      241 krqlerqklq elekqreeqk rkekeaeerq keeerkqrel eehererkre eklrkreqkq
      301 rdrevrrnrk qleklqaeeq kklqekikle erklllaqrn lqsirliael lsraktvkll
      361 eqehneekir lqqleerrrl qeaelkrvee ekeralglqr kekelrekll nnllskkmda
      421 vdqnkeetet sqsdtlktpd gvphtvsssc itstsgqavt grlatvsqse mvspesanak
      481 ckylngniqk lhitnsercs ekrssavlss vpttnqqqks lysydrhtyr kdshreqdkr
      541 steprrrksr scssintdes kgkrersrhr rdasyedekr rkerryyrrs srsysprqsr
      601 sprrrsvspr rsryrrtrsr erkrdrrers rscrsvsrrr rhrs
//
LOCUS       XP_053927614             644 aa            linear   VRT 09-MAR-2023
DEFINITION  A-kinase anchor protein 17A isoform X2 [Cuculus canorus].
ACCESSION   XP_053927614
VERSION     XP_053927614.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071639.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..644
                     /product="A-kinase anchor protein 17A isoform X2"
                     /calculated_mol_wt=76344
     Region          114..236
                     /region_name="RRM_AKAP17A"
                     /note="RNA recognition motif (RRM) found in A-kinase
                     anchor protein 17A (AKAP-17A) and similar proteins;
                     cd12264"
                     /db_xref="CDD:409708"
     Region          <240..>421
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..644
                     /gene="AKAP17A"
                     /coded_by="XM_054071639.1:178..2112"
                     /db_xref="GeneID:104063723"
ORIGIN      
        1 mtisvalpql kqpgksisnw evmerlkamv qthqfstlri skstmdfirf egevenkslv
       61 ksflacldgk tiklsgfsdi lkvraaeyki dfptrhdwds ffrdakdmne tlpgerpdti
      121 hleglpckwf aakdsgsekp seevlikvfk kfgeirnvdi pmldpyreem tgrnfhtfsf
      181 gghlnfeayv qyreyagfik amnalrgmkl mykgddgkav acnikvsfds tkhlsdasik
      241 krqlerqklq elekqreeqk rkekeaeerq keeerkqrel eehererkre eklrkreqkq
      301 rdrevrrnrk qleklqaeeq kklqekikle erklllaqrn lqsirliael lsraktvkll
      361 eqehneekir lqqleerrrl qeaelkrvee ekeralglqr kekelrekll nnllskkmda
      421 vdqnkeetet sqsdtlktpd gvphtvsssc itstsgqavt grlatvsqse mvspesanak
      481 ckylngniqk lhitnsercs ekrssavlss vpttnqqqks lysydrhtyr kdshreqdkr
      541 steprrrksr scssintdes kgkrersrhr rdasyedekr rkerryyrrs srsysprqsr
      601 sprrrsvspr rsryrrtrsr erkrdrrers rscrsvsrrr rhrs
//
LOCUS       XP_053927624             346 aa            linear   VRT 09-MAR-2023
DEFINITION  acetylserotonin O-methyltransferase isoform X1 [Cuculus canorus].
ACCESSION   XP_053927624
VERSION     XP_053927624.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071649.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..346
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..346
                     /product="acetylserotonin O-methyltransferase isoform X1"
                     /calculated_mol_wt=38255
     Region          13..101
                     /region_name="dimerization2"
                     /note="dimerization domain; pfam16864"
                     /db_xref="CDD:465287"
     Region          118..327
                     /region_name="Methyltransf_2"
                     /note="O-methyltransferase domain; pfam00891"
                     /db_xref="CDD:395719"
     CDS             1..346
                     /gene="ASMT"
                     /coded_by="XM_054071649.1:3840..4880"
                     /db_xref="GeneID:104063724"
ORIGIN      
        1 mgstedldyp qiilqyssgf lvskvmftac elgvfdllle sgeplssdai aaclgtsttg
       61 merlldacvg lkllaveltq ggalyrntei sniyltkssp ksqyhiimyy sntvylcwhy
      121 ladavregrn qyerafgiss edpfgamyrs egemlkfmag qnsvwsicgr dvlaafdlsv
      181 fkqiydlggg ggalaqecvs lypnstvtiy dlpkvvqvak eqfvppeehr itfhegdffn
      241 dsipeaelyi lskilhdwdd dkckqllskv yaackpgggv llvesllned ksgpletqly
      301 smnmlvqteg kertaeeysr lleaagfgdi rvkrtgklyd avlgrk
//
LOCUS       XP_053927632             337 aa            linear   VRT 09-MAR-2023
DEFINITION  acetylserotonin O-methyltransferase isoform X2 [Cuculus canorus].
ACCESSION   XP_053927632
VERSION     XP_053927632.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071657.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..337
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..337
                     /product="acetylserotonin O-methyltransferase isoform X2"
                     /calculated_mol_wt=37262
     Region          13..101
                     /region_name="dimerization2"
                     /note="dimerization domain; pfam16864"
                     /db_xref="CDD:465287"
     Region          118..318
                     /region_name="Methyltransf_2"
                     /note="O-methyltransferase domain; pfam00891"
                     /db_xref="CDD:395719"
     CDS             1..337
                     /gene="ASMT"
                     /coded_by="XM_054071657.1:3840..4853"
                     /db_xref="GeneID:104063724"
ORIGIN      
        1 mgstedldyp qiilqyssgf lvskvmftac elgvfdllle sgeplssdai aaclgtsttg
       61 merlldacvg lkllaveltq ggalyrntei sniyltkssp ksqyhiimyy sntvylcwhy
      121 ladavregrn qyerafgiss edpfgamyrs egemlkfmag qnsvwsicgr dvlaafdlsv
      181 fkqiydlggg ggalaqecvs lypnstvtiy dlpkvvqvak eqfvppeehr itfheeaely
      241 ilskilhdwd ddkckqllsk vyaackpggg vllvesllne dksgpletql ysmnmlvqte
      301 gkertaeeys rlleaagfgd irvkrtgkly davlgrk
//
LOCUS       XP_053927643             249 aa            linear   VRT 09-MAR-2023
DEFINITION  tetraspanin-7 [Cuculus canorus].
ACCESSION   XP_053927643
VERSION     XP_053927643.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071668.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..249
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..249
                     /product="tetraspanin-7"
                     /calculated_mol_wt=27477
     Region          15..239
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          110..213
                     /region_name="TM4SF2_6_like_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), TM4SF2_6_like subfamily.
                     Tetraspanins are trans-membrane proteins with 4
                     trans-membrane segments. Both the N- and C-termini lie on
                     the intracellular side of the membrane. This alignment...;
                     cd03161"
                     /db_xref="CDD:239414"
     Site            order(111,116,120,122..123,126,140,143..144,147..148)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239414"
     CDS             1..249
                     /gene="TSPAN7"
                     /coded_by="XM_054071668.1:77..826"
                     /db_xref="GeneID:104057437"
ORIGIN      
        1 masrrmetkp vitclktlli iysfvfwitg villavgvwg kltlgtyisl iaenstnapy
       61 vligtgttii vfglfgcfat crgspwmlkl yamflslvfl aelvagisgf vfrheikdtf
      121 lrtyteaiqn ynkndersha vdnvqeslsc cgiqsytnws tspyffkhgi ptsccmnssd
      181 cntqdlrnmt vaatkvnqkg cydlvtsfme tnmgiiagva fgiafsqlig mllacclsrf
      241 itanqyemv
//
LOCUS       XP_053927662             331 aa            linear   VRT 09-MAR-2023
DEFINITION  thyrotroph embryonic factor isoform X1 [Cuculus canorus].
ACCESSION   XP_053927662
VERSION     XP_053927662.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071687.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..331
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..331
                     /product="thyrotroph embryonic factor isoform X1"
                     /calculated_mol_wt=36078
     Region          247..306
                     /region_name="bZIP_HLF"
                     /note="Basic leucine zipper (bZIP) domain of Hepatic
                     leukemia factor (HLF) and similar proteins: a DNA-binding
                     and dimerization domain; cd14695"
                     /db_xref="CDD:269843"
     Region          248..306
                     /region_name="coiled coil"
                     /note="coiled coil [structural motif]"
                     /db_xref="CDD:269843"
     Site            order(254..255,257..259,261..266,268..270)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:269843"
     Site            order(269,272..273,276..277,279..280,283..284,286..287,
                     290..291,293..294,297..298,300..301)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:269843"
     CDS             1..331
                     /gene="TEF"
                     /coded_by="XM_054071687.1:82..1077"
                     /db_xref="GeneID:104055497"
ORIGIN      
        1 mpgraahqea aaaggggggp etvaaagsag aaaqqeeqqq rslagafplv lkklmenppr
       61 earldkekek ikleedetaa astmavsasl mppiwdktip ydgesfhley mdldefllen
      121 gipsspthld lnqnpllpva elegkesasa stgspassss tavyqqseaa sstesppqne
      181 rntpspidpd cvevevnfnp dpadlvlssv pggelfnprk hkfteedlkp qpmikkakkv
      241 fvpdeqkdek ywtrrkknnv aakrsrdarr lkenqitira aflekental rtevaelrke
      301 vgrcknivsk yetrygplcv stlqpdrskv q
//
LOCUS       XP_053927672             324 aa            linear   VRT 09-MAR-2023
DEFINITION  thyrotroph embryonic factor isoform X2 [Cuculus canorus].
ACCESSION   XP_053927672
VERSION     XP_053927672.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071697.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..324
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..324
                     /product="thyrotroph embryonic factor isoform X2"
                     /calculated_mol_wt=35316
     Region          247..306
                     /region_name="bZIP_HLF"
                     /note="Basic leucine zipper (bZIP) domain of Hepatic
                     leukemia factor (HLF) and similar proteins: a DNA-binding
                     and dimerization domain; cd14695"
                     /db_xref="CDD:269843"
     Region          248..306
                     /region_name="coiled coil"
                     /note="coiled coil [structural motif]"
                     /db_xref="CDD:269843"
     Site            order(254..255,257..259,261..266,268..270)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:269843"
     Site            order(269,272..273,276..277,279..280,283..284,286..287,
                     290..291,293..294,297..298,300..301)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:269843"
     CDS             1..324
                     /gene="TEF"
                     /coded_by="XM_054071697.1:81..1055"
                     /db_xref="GeneID:104055497"
ORIGIN      
        1 mpgraahqea aaaggggggp etvaaagsag aaaqqeeqqq rslagafplv lkklmenppr
       61 earldkekek ikleedetaa astmavsasl mppiwdktip ydgesfhley mdldefllen
      121 gipsspthld lnqnpllpva elegkesasa stgspassss tavyqqseaa sstesppqne
      181 rntpspidpd cvevevnfnp dpadlvlssv pggelfnprk hkfteedlkp qpmikkakkv
      241 fvpdeqkdek ywtrrkknnv aakrsrdarr lkenqitira aflekental rtevaelrke
      301 vgrcknivsk yetrygpfdl sdse
//
LOCUS       XP_053927677             301 aa            linear   VRT 09-MAR-2023
DEFINITION  thyrotroph embryonic factor isoform X3 [Cuculus canorus].
ACCESSION   XP_053927677
VERSION     XP_053927677.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071702.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..301
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..301
                     /product="thyrotroph embryonic factor isoform X3"
                     /calculated_mol_wt=33401
     Region          217..276
                     /region_name="bZIP_HLF"
                     /note="Basic leucine zipper (bZIP) domain of Hepatic
                     leukemia factor (HLF) and similar proteins: a DNA-binding
                     and dimerization domain; cd14695"
                     /db_xref="CDD:269843"
     Region          218..276
                     /region_name="coiled coil"
                     /note="coiled coil [structural motif]"
                     /db_xref="CDD:269843"
     Site            order(224..225,227..229,231..236,238..240)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:269843"
     Site            order(239,242..243,246..247,249..250,253..254,256..257,
                     260..261,263..264,267..268,270..271)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:269843"
     CDS             1..301
                     /gene="TEF"
                     /coded_by="XM_054071702.1:234..1139"
                     /db_xref="GeneID:104055497"
ORIGIN      
        1 msscnsaggp taldfpevlk slleyslpwa nkmtdkekek ikleedetaa astmavsasl
       61 mppiwdktip ydgesfhley mdldefllen gipsspthld lnqnpllpva elegkesasa
      121 stgspassss tavyqqseaa sstesppqne rntpspidpd cvevevnfnp dpadlvlssv
      181 pggelfnprk hkfteedlkp qpmikkakkv fvpdeqkdek ywtrrkknnv aakrsrdarr
      241 lkenqitira aflekental rtevaelrke vgrcknivsk yetrygplcv stlqpdrskv
      301 q
//
LOCUS       XP_009554919             294 aa            linear   VRT 09-MAR-2023
DEFINITION  thyrotroph embryonic factor isoform X4 [Cuculus canorus].
ACCESSION   XP_009554919
VERSION     XP_009554919.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556624.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..294
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..294
                     /product="thyrotroph embryonic factor isoform X4"
                     /calculated_mol_wt=32639
     Region          217..276
                     /region_name="bZIP_HLF"
                     /note="Basic leucine zipper (bZIP) domain of Hepatic
                     leukemia factor (HLF) and similar proteins: a DNA-binding
                     and dimerization domain; cd14695"
                     /db_xref="CDD:269843"
     Region          218..276
                     /region_name="coiled coil"
                     /note="coiled coil [structural motif]"
                     /db_xref="CDD:269843"
     Site            order(224..225,227..229,231..236,238..240)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:269843"
     Site            order(239,242..243,246..247,249..250,253..254,256..257,
                     260..261,263..264,267..268,270..271)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:269843"
     CDS             1..294
                     /gene="TEF"
                     /coded_by="XM_009556624.2:233..1117"
                     /db_xref="GeneID:104055497"
ORIGIN      
        1 msscnsaggp taldfpevlk slleyslpwa nkmtdkekek ikleedetaa astmavsasl
       61 mppiwdktip ydgesfhley mdldefllen gipsspthld lnqnpllpva elegkesasa
      121 stgspassss tavyqqseaa sstesppqne rntpspidpd cvevevnfnp dpadlvlssv
      181 pggelfnprk hkfteedlkp qpmikkakkv fvpdeqkdek ywtrrkknnv aakrsrdarr
      241 lkenqitira aflekental rtevaelrke vgrcknivsk yetrygpfdl sdse
//
LOCUS       XP_053927691             288 aa            linear   VRT 09-MAR-2023
DEFINITION  thyrotroph embryonic factor isoform X5 [Cuculus canorus].
ACCESSION   XP_053927691
VERSION     XP_053927691.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071716.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..288
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..288
                     /product="thyrotroph embryonic factor isoform X5"
                     /calculated_mol_wt=31958
     Region          217..276
                     /region_name="bZIP_HLF"
                     /note="Basic leucine zipper (bZIP) domain of Hepatic
                     leukemia factor (HLF) and similar proteins: a DNA-binding
                     and dimerization domain; cd14695"
                     /db_xref="CDD:269843"
     Region          218..276
                     /region_name="coiled coil"
                     /note="coiled coil [structural motif]"
                     /db_xref="CDD:269843"
     Site            order(224..225,227..229,231..236,238..240)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:269843"
     Site            order(239,242..243,246..247,249..250,253..254,256..257,
                     260..261,263..264,267..268,270..271)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:269843"
     CDS             1..288
                     /gene="TEF"
                     /coded_by="XM_054071716.1:233..1099"
                     /db_xref="GeneID:104055497"
ORIGIN      
        1 msscnsaggp taldfpevlk slleyslpwa nkmtdkekek ikleedetaa astmavsasl
       61 mppiwdktip ydgesfhley mdldefllen gipsspthld lnqnpllpva elegkesasa
      121 stgspassss tavyqqseaa sstesppqne rntpspidpd cvevevnfnp dpadlvlssv
      181 pggelfnprk hkfteedlkp qpmikkakkv fvpdeqkdek ywtrrkknnv aakrsrdarr
      241 lkenqitira aflekental rtevaelrke vgrcknivsk yetrygpl
//
LOCUS       XP_009555406             400 aa            linear   VRT 09-MAR-2023
DEFINITION  F-box/LRR-repeat protein 14 [Cuculus canorus].
ACCESSION   XP_009555406
VERSION     XP_009555406.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557111.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555406.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..400
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..400
                     /product="F-box/LRR-repeat protein 14"
                     /calculated_mol_wt=43835
     Region          6..46
                     /region_name="F-box_FBXL14"
                     /note="F-box domain found in F-box/LRR-repeat protein 14
                     (FBXL14) and similar proteins; cd22125"
                     /db_xref="CDD:438897"
     Site            order(8,12,15..16,19..20,24,26..27,31..33,35)
                     /site_type="other"
                     /note="putative Skp1 binding site [polypeptide binding]"
                     /db_xref="CDD:438897"
     Region          92..118
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          <127..268
                     /region_name="AMN1"
                     /note="Antagonist of mitotic exit network protein 1;
                     cd09293"
                     /db_xref="CDD:187754"
     Region          145..170
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          171..203
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          203..388
                     /region_name="AMN1"
                     /note="Antagonist of mitotic exit network protein 1;
                     cd09293"
                     /db_xref="CDD:187754"
     Region          204..229
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          230..254
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          255..280
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          281..306
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          307..330
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          332..357
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          358..377
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     CDS             1..400
                     /gene="FBXL14"
                     /coded_by="XM_009557111.2:485..1687"
                     /db_xref="GeneID:104055921"
ORIGIN      
        1 methisclfp ellamifgyl evrdkgraaq vctawrdaay hrsvwrgvea klhlrranps
       61 lfpslaargi rrvqilslrr slsyviqgma dieslnlsgc ynltdnglgh afvaeisslr
      121 slnlslckqi tdsslgriaq ylkglevlel ggcsnitntg llliawglqr lkslnlrscr
      181 hlsdvgighl agmtrsaaeg clgleqltlq dcqklsdlsl khlarglgrl rqlnlsfcgg
      241 isdagllhls hmsslrslnl rscdnisdtg imhlamgslr lsgldvsfcd kvgdqslayi
      301 aqgldglrsl slcschisde ginrmvrqmh glrtlnigqc vritdkglel iaehlsqltg
      361 idlygctrit krgleritql pclkvlnlgl wemtesekvr
//
LOCUS       XP_053927708             381 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Wnt-5b [Cuculus canorus].
ACCESSION   XP_053927708
VERSION     XP_053927708.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071733.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..381
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..381
                     /product="protein Wnt-5b"
                     /calculated_mol_wt=42533
     Region          70..381
                     /region_name="Wnt_Wnt5b"
                     /note="Wnt domain found in protein Wnt-5b and similar
                     proteins; cd19348"
                     /db_xref="CDD:381722"
     Site            order(240..241,244..246,254,360,362,364,366)
                     /site_type="other"
                     /note="Frizzled receptor binding site [polypeptide
                     binding]"
                     /db_xref="CDD:381722"
     CDS             1..381
                     /gene="WNT5B"
                     /coded_by="XM_054071733.1:249..1394"
                     /db_xref="GeneID:104055905"
ORIGIN      
        1 mqgapsrrpa prglpqrrpq ptmagprlal aaallcscas pvadasswws lamnpiqrpe
       61 myiigaqpvc sqlpglspgq rklcqlyqeh mvfigegars aikecqyqfr qrrwncstvd
      121 ntsvfgrvmk igsretafty avsaagvvna isracregel sscgcsrtar pkdlprdwlw
      181 ggcgdnveyg yrfakefvda kereknyvrg seeqarmlmn lqnneagrra vykladvack
      241 chgvsgscsl ktcwlqladf rkvgdllkek ydsaaamris rkgklelvnn rfnmptqedl
      301 vyvdpspdyc lrnettgslg tqgrlcnkts egmdgcelmc cgrgydqfks vqverchckf
      361 hwccyvkckk cteivdqyvc k
//
LOCUS       XP_053927726             248 aa            linear   VRT 09-MAR-2023
DEFINITION  trypsin I-P1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053927726
VERSION     XP_053927726.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071751.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..248
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..248
                     /product="trypsin I-P1 isoform X1"
                     /calculated_mol_wt=26504
     Region          25..244
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cd00190"
                     /db_xref="CDD:238113"
     Site            25
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(64,108,202)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(196,217,219)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..248
                     /gene="LOC104062828"
                     /coded_by="XM_054071751.1:1..747"
                     /db_xref="GeneID:104062828"
ORIGIN      
        1 mkffllvtfv gvavafpinn dddkivggyt caansvpyqv slnsgyhfcg gslinsqwvl
       61 saahcykyri qvqlgkhnla ltesteqfis sakvirypgy dsatldndim liklaqpaql
      121 travqtvslp tscvdagttc lisgwgntls dgrlypdtlq cleapvlsss ecsnayypgl
      181 itnnmicigf leggkdscqn dsggpvvcng qlqgivswgi gcakkgypgv ytkvcnfvsw
      241 ieetmasn
//
LOCUS       XP_053927736             248 aa            linear   VRT 09-MAR-2023
DEFINITION  trypsin I-P1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053927736
VERSION     XP_053927736.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071761.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..248
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..248
                     /product="trypsin I-P1 isoform X2"
                     /calculated_mol_wt=26490
     Region          25..244
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cd00190"
                     /db_xref="CDD:238113"
     Site            25
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(64,108,202)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(196,217,219)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..248
                     /gene="LOC104062828"
                     /coded_by="XM_054071761.1:1..747"
                     /db_xref="GeneID:104062828"
ORIGIN      
        1 mkffllvtfv gvavafpinn dddkivggyt caansvpyqv slnsgyhfcg gslinsqwvl
       61 saahcykyri qvqlgkhnla ltesteqfis sakvirypgy dsgtldndim liklaqpaql
      121 travqtvslp tscvdagttc lisgwgntls dgrlypdtlq cleapvlsss ecsnayypgl
      181 itnnmicigf leggkdscqn dsggpvvcng qlqgivswgi gcakkgypgv ytkvcnfvsw
      241 ieetmasn
//
LOCUS       XP_053927759            1612 aa            linear   VRT 09-MAR-2023
DEFINITION  low-density lipoprotein receptor-related protein 6 [Cuculus
            canorus].
ACCESSION   XP_053927759
VERSION     XP_053927759.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071784.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1612
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1612
                     /product="low-density lipoprotein receptor-related protein
                     6"
                     /calculated_mol_wt=180121
     Region          55..>158
                     /region_name="NHL"
                     /note="NHL repeat unit of beta-propeller proteins;
                     cl18310"
                     /db_xref="CDD:302697"
     Region          55..93
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          89..127
                     /region_name="LY"
                     /note="Low-density lipoprotein-receptor YWTD domain;
                     smart00135"
                     /db_xref="CDD:214531"
     Region          97..132
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271320"
     Region          150..191
                     /region_name="Ldl_recept_b"
                     /note="Low-density lipoprotein receptor repeat class B;
                     pfam00058"
                     /db_xref="CDD:459654"
     Region          175..216
                     /region_name="LY"
                     /note="Low-density lipoprotein-receptor YWTD domain;
                     smart00135"
                     /db_xref="CDD:214531"
     Region          217..257
                     /region_name="LY"
                     /note="Low-density lipoprotein-receptor YWTD domain;
                     smart00135"
                     /db_xref="CDD:214531"
     Region          286..323
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          353..393
                     /region_name="LY"
                     /note="Low-density lipoprotein-receptor YWTD domain;
                     smart00135"
                     /db_xref="CDD:214531"
     Region          397..437
                     /region_name="LY"
                     /note="Low-density lipoprotein-receptor YWTD domain;
                     smart00135"
                     /db_xref="CDD:214531"
     Region          458..499
                     /region_name="Ldl_recept_b"
                     /note="Low-density lipoprotein receptor repeat class B;
                     pfam00058"
                     /db_xref="CDD:459654"
     Region          483..524
                     /region_name="LY"
                     /note="Low-density lipoprotein-receptor YWTD domain;
                     smart00135"
                     /db_xref="CDD:214531"
     Region          525..565
                     /region_name="LY"
                     /note="Low-density lipoprotein-receptor YWTD domain;
                     smart00135"
                     /db_xref="CDD:214531"
     Region          592..627
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          <654..813
                     /region_name="YncE"
                     /note="DNA-binding beta-propeller fold protein YncE
                     [General function prediction only]; COG3391"
                     /db_xref="CDD:442618"
     Region          697..739
                     /region_name="LY"
                     /note="Low-density lipoprotein-receptor YWTD domain;
                     smart00135"
                     /db_xref="CDD:214531"
     Region          827..866
                     /region_name="LY"
                     /note="Low-density lipoprotein-receptor YWTD domain;
                     smart00135"
                     /db_xref="CDD:214531"
     Region          893..929
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          958..998
                     /region_name="LY"
                     /note="Low-density lipoprotein-receptor YWTD domain;
                     smart00135"
                     /db_xref="CDD:214531"
     Region          <968..1075
                     /region_name="YncE"
                     /note="DNA-binding beta-propeller fold protein YncE
                     [General function prediction only]; COG3391"
                     /db_xref="CDD:442618"
     Region          1069..1110
                     /region_name="Ldl_recept_b"
                     /note="Low-density lipoprotein receptor repeat class B;
                     pfam00058"
                     /db_xref="CDD:459654"
     Region          1094..1136
                     /region_name="LY"
                     /note="Low-density lipoprotein-receptor YWTD domain;
                     smart00135"
                     /db_xref="CDD:214531"
     Region          1207..1243
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          1249..1285
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(1254,1264,1275..1276)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(1268,1271,1275,1281..1282)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            1278..1282
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          1288..1322
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(1293,1301,1312..1313)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(1305,1308,1312,1318..1319)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            1315..1319
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          1326..1360
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(1331,1339,1350..1351)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(1343,1346,1350,1356..1357)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            1353..1357
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     CDS             1..1612
                     /gene="LRP6"
                     /coded_by="XM_054071784.1:208..5046"
                     /db_xref="GeneID:104062825"
ORIGIN      
        1 mgavlrclla csfcslmraa plllyanrrd lrlvdaangk enatvivggl edaaavdfvf
       61 vkgliywsdv seeaikrtef nksgsvqnvv isgllspdgl acdwlgekly wtdsetnrie
      121 vsnldgslrk vlfwqeldqp raialdparg fmywtdwgev pkieragmdg ssrsvivntd
      181 iywpngltld yeeqklywad aklnfihksn ldgshrqavv kgslphpfal tlfgdtlywt
      241 dwnthsilac skysgedlre ihsnifspmd ihafsqkrqp narnpcginn ggcshlclms
      301 ptepsyqcac ptgvklleng ktckdgatel lllarrtdlr risldtpdft divlpledir
      361 haiaidfdpl egyiywtdde vrairrsfid gsgsqfvvta qiahpdgiav dwvarnlywt
      421 dtgtdrievt rlngtmrkil isedleepra ivldpmvgym ywtdwgeipk ieraaldgsd
      481 rivlvntslg wpnglaldya eskiywgdak tdkievmntd gtgrrvlved klphifgftl
      541 lgdyvywtdw qrrsiervhk rtaereiiid qlpdlmglka tnvhqiigtn pcaednggcs
      601 hlclyrpqgl rcacpiglel indmktcivp eafllfsrra dirrisletn nnnvaipltg
      661 vkeasaldfd vtdnriywtd islktisraf mngsalehvv efgldypegm avdwlgknly
      721 wadtgtnrie vskldgqhrq vlvwkdldsp ralaldpaeg fmywtewggk pkidraamdg
      781 terttlvpnv grangltidy akrrlywtdl dtnliessnm lgldreiiad dlphpfgltq
      841 yqdyiywtdw srrsierank tsgqnrtiiq ghldyvmdil vfhssrqagw necassnghc
      901 shlclavpvg gfvcgcpahy slnsdnrtcs apttfllfsq knainrmvid eqqspdiilp
      961 ihslrnvrai dydpldkqly widsrqniir kaqedgsqsl tvvtspvpnq nldmqpydls
     1021 idiysryiyw tceatnvinv trldgrpmgv vlkgdqdrpr aivvnpekgy myftnlqers
     1081 pkieraaldg terevlffsg lskpialaid sqlgklfwad sdlrriessd lsganrivle
     1141 dsnilqpvgl tvfenwlywi drqqqmieki dmtgregrtk vqariaqlsd ihavkefniq
     1201 eyrqhpcsqd nggcshiciv kgdgttrcsc pvhlvllqde lscgepptcs pqqftcftge
     1261 idcipvawrc dgftecedhs dekncpvcsd tqfqcesgqc iesalrcnge ancqdnsdek
     1321 ncevlcltdq frcasgqcig kskkcdhnld csdssdeqgc ytteepapqp nntigsiigv
     1381 iltvfvvgam yficqrvlcp rmkgdgetmt ndyvvhgpas vplgyvphps slsgslpgms
     1441 rgksvissls imggssgppy drahvtgass ssssstkgty fppilnppps patershytm
     1501 efgyssnsps thrsysyrpy syrhfapptt pcstdvcdsd yapsrrvtaa takgytsdln
     1561 ydsepvpppp tprsqylsae enyescppsp ytersyshhl yppppspctd ss
//
LOCUS       XP_053927775             325 aa            linear   VRT 09-MAR-2023
DEFINITION  apoptosis facilitator Bcl-2-like protein 14 [Cuculus canorus].
ACCESSION   XP_053927775
VERSION     XP_053927775.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071800.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..325
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..325
                     /product="apoptosis facilitator Bcl-2-like protein 14"
                     /calculated_mol_wt=36838
     Region          178..>313
                     /region_name="Bcl-2_like"
                     /note="Apoptosis regulator proteins of the Bcl-2 family,
                     named after B-cell lymphoma 2. This alignment model spans
                     what have been described as Bcl-2 homology regions BH1,
                     BH2, BH3, and BH4. Many members of this family have an
                     additional C-terminal transmembrane...; cl02575"
                     /db_xref="CDD:470624"
     Site            211..219
                     /site_type="active"
                     /note="BH3 [active]"
                     /db_xref="CDD:132900"
     Site            order(214..215,217..218,229,232,239..240,243..244,
                     246..247,262..263,266..267,271,275)
                     /site_type="active"
                     /note="BH3-homology region binding site [active]"
                     /db_xref="CDD:132900"
     Site            order(246..248,262..264,266..272)
                     /site_type="active"
                     /note="BH1 [active]"
                     /db_xref="CDD:132900"
     CDS             1..325
                     /gene="BCL2L14"
                     /coded_by="XM_054071800.1:1..978"
                     /db_xref="GeneID:104062837"
ORIGIN      
        1 maspngvsme eipledderd nieykilmay aqkrlsvsky rkllkneanv qkspsfirtk
       61 vktdyprdkn gpiekaayqs gvveqhskkr skrkylpgyc lsffcsraeq ekppmpplhq
      121 eggassfvpe eqseifqegn sqhqesetah vnriadklak lvtsrsqepp sdvsfkimlq
      181 spsqddselt ngsegkehde ekiiqtivsl lrqsgdqleg kikkdrvfyq hfkdmlsytf
      241 fkritdlfle avsagapsep ggkvqytkla famevatrlt avdnhpmnlv lgfglkylre
      301 hfkpwiqdqg gwekaltsld qeeve
//
LOCUS       XP_053927786            1599 aa            linear   VRT 09-MAR-2023
DEFINITION  rho guanine nucleotide exchange factor TIAM1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053927786
VERSION     XP_053927786.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071811.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1599
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1599
                     /product="rho guanine nucleotide exchange factor TIAM1
                     isoform X1"
                     /calculated_mol_wt=178836
     Region          434..560
                     /region_name="PH1_Tiam1_2"
                     /note="T-lymphoma invasion and metastasis 1 and 2
                     Pleckstrin Homology (PH) domain, N-terminal domain;
                     cd01230"
                     /db_xref="CDD:269937"
     Region          574..671
                     /region_name="Tiam_CC_Ex"
                     /note="T-lymphoma invasion and metastasis CC-Ex domain;
                     pfam18385"
                     /db_xref="CDD:408184"
     Region          768..834
                     /region_name="Ubl1_cv_Nsp3_N-like"
                     /note="first ubiquitin-like (Ubl) domain located at the
                     N-terminus of coronavirus SARS-CoV non-structural protein
                     3 (Nsp3) and related proteins; cl28922"
                     /db_xref="CDD:475130"
     Region          844..927
                     /region_name="PDZ"
                     /note="Domain present in PSD-95, Dlg, and ZO-1/2;
                     smart00228"
                     /db_xref="CDD:214570"
     Region          1047..1236
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; smart00325"
                     /db_xref="CDD:214619"
     Site            order(1050,1054,1160,1186..1187,1190..1191,1193..1194,
                     1197..1198,1201..1202,1205,1231,1235)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          1238..1409
                     /region_name="PH2_Tiam1_2"
                     /note="T-lymphoma invasion and metastasis 1 and 2
                     Pleckstrin Homology (PH) domain, C-terminal domain;
                     cd01255"
                     /db_xref="CDD:269957"
     CDS             1..1599
                     /gene="TIAM1"
                     /coded_by="XM_054071811.1:706..5505"
                     /db_xref="GeneID:104064769"
ORIGIN      
        1 mgnaesqsve hafygdkhts lgrkhtsrsl rlsnkasrrt rhassgkiih rnsevstrss
       61 stpsipqsla englepfaqe anledfgspi wvdrmdmglr pvsyhtdssv tpsvdsstvl
      121 taasvqsmpd seesrlygde ppflaegngr shryaangtn fmetasfkkk rsksadiwre
      181 dslefslsdl sqehltsnee ilglaeekdt entqgteasd spqplvacqr ansmsdlysp
      241 ktpsatvngg prnafggycr nlvsdildig shkmssvtae dapsysnynt lpcrkshcls
      301 egatnpqish snsmqgrrak ttqdvnageg seftdsgieg aatdtdllsr rsnatnssys
      361 ptasrafigs dsgssstgdg lrqgvyenfr relemsttns enleeagsal sdeqssgtls
      421 spgqsdillt aaqgtvrkag alavknflvh kknkkvesat rrkwkhywvs lkgctlffye
      481 tdgrsgidhn sipkhavwve nsivqavpeh pkkdfvfcls nslgdaflfq tssqtelenw
      541 itaihsacat avarqhhked tvkllkteik kleqkidmde kmkkmgemql ssvtdskkkk
      601 tildqifvwe qnleqfqmdl fryrcylasl qggelpnpkr llafasrptk vamgrlgifs
      661 vssfhalvaa rtgesgvrrr tqamsrsask rrsrfsslwg ldttskkkqg rpsinqvfge
      721 gvdsvkksle gifddavpdg krekeaalss vhqhnpdcdi wvheyftpsw fclpnnqpal
      781 tvirpgdttr dvlemickth qldhsahylr lkflienqiq fyvpkpeedi yellykeiei
      841 cqkitqhiqi eksdassdiy gfslssveee girrlyvngv ketglafkkg lkagdeivei
      901 nkkaaedlds allkdalvqp slcltvrtyp eieegqklmq ppprrlenps dlsdstlaft
      961 gsnqaghslc gdpdssveta peeaeaqdle ssdeadkmsk steqvaafcr slhemnpsds
     1021 sahpqeftgp qlatmrqltd adklrkvice lletertyvk dlnclmeryl kplqketflt
     1081 pdeldvlfgn ltemvafqve flktledgvr lvpdleklek veqfkkvlfs lggsflyyad
     1141 rfklysafca shtkvpkvlv kaktdtafka fldaqnprrq hsstlesyli kpiqrilkyp
     1201 lllkelfalt dvdseehyhl dvaiktmnkv ashinemqki heeygavfdq liaeqtgekk
     1261 evadlsmgdl llhntviwln ppaslgkwkk epelaafvfk tavvlvykdg skqkkklggs
     1321 hrasiyedwd pfrfrhmipl ealqvralas adaetnsvce ivhvkseseg rpertfhlcc
     1381 sspehrkdfl kavhsilrdk hrrqllktes lpssqqyvpf ggkrlcalkg arpamnravs
     1441 apskslgrrr rrlarnrfti dsdavymssp ekepqqpths gdtdrwveeq fdlaqyeeqe
     1501 diketdilsd ddeyceamrg amadqelrer lqaasitssq pcrgdrmrpa mdthasrmtq
     1561 lkkqaalsgi ngdmeghgee viwvrredfv pnrklntel
//
LOCUS       XP_053927793            1599 aa            linear   VRT 09-MAR-2023
DEFINITION  rho guanine nucleotide exchange factor TIAM1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053927793
VERSION     XP_053927793.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071818.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1599
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1599
                     /product="rho guanine nucleotide exchange factor TIAM1
                     isoform X1"
                     /calculated_mol_wt=178836
     Region          434..560
                     /region_name="PH1_Tiam1_2"
                     /note="T-lymphoma invasion and metastasis 1 and 2
                     Pleckstrin Homology (PH) domain, N-terminal domain;
                     cd01230"
                     /db_xref="CDD:269937"
     Region          574..671
                     /region_name="Tiam_CC_Ex"
                     /note="T-lymphoma invasion and metastasis CC-Ex domain;
                     pfam18385"
                     /db_xref="CDD:408184"
     Region          768..834
                     /region_name="Ubl1_cv_Nsp3_N-like"
                     /note="first ubiquitin-like (Ubl) domain located at the
                     N-terminus of coronavirus SARS-CoV non-structural protein
                     3 (Nsp3) and related proteins; cl28922"
                     /db_xref="CDD:475130"
     Region          844..927
                     /region_name="PDZ"
                     /note="Domain present in PSD-95, Dlg, and ZO-1/2;
                     smart00228"
                     /db_xref="CDD:214570"
     Region          1047..1236
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; smart00325"
                     /db_xref="CDD:214619"
     Site            order(1050,1054,1160,1186..1187,1190..1191,1193..1194,
                     1197..1198,1201..1202,1205,1231,1235)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          1238..1409
                     /region_name="PH2_Tiam1_2"
                     /note="T-lymphoma invasion and metastasis 1 and 2
                     Pleckstrin Homology (PH) domain, C-terminal domain;
                     cd01255"
                     /db_xref="CDD:269957"
     CDS             1..1599
                     /gene="TIAM1"
                     /coded_by="XM_054071818.1:579..5378"
                     /db_xref="GeneID:104064769"
ORIGIN      
        1 mgnaesqsve hafygdkhts lgrkhtsrsl rlsnkasrrt rhassgkiih rnsevstrss
       61 stpsipqsla englepfaqe anledfgspi wvdrmdmglr pvsyhtdssv tpsvdsstvl
      121 taasvqsmpd seesrlygde ppflaegngr shryaangtn fmetasfkkk rsksadiwre
      181 dslefslsdl sqehltsnee ilglaeekdt entqgteasd spqplvacqr ansmsdlysp
      241 ktpsatvngg prnafggycr nlvsdildig shkmssvtae dapsysnynt lpcrkshcls
      301 egatnpqish snsmqgrrak ttqdvnageg seftdsgieg aatdtdllsr rsnatnssys
      361 ptasrafigs dsgssstgdg lrqgvyenfr relemsttns enleeagsal sdeqssgtls
      421 spgqsdillt aaqgtvrkag alavknflvh kknkkvesat rrkwkhywvs lkgctlffye
      481 tdgrsgidhn sipkhavwve nsivqavpeh pkkdfvfcls nslgdaflfq tssqtelenw
      541 itaihsacat avarqhhked tvkllkteik kleqkidmde kmkkmgemql ssvtdskkkk
      601 tildqifvwe qnleqfqmdl fryrcylasl qggelpnpkr llafasrptk vamgrlgifs
      661 vssfhalvaa rtgesgvrrr tqamsrsask rrsrfsslwg ldttskkkqg rpsinqvfge
      721 gvdsvkksle gifddavpdg krekeaalss vhqhnpdcdi wvheyftpsw fclpnnqpal
      781 tvirpgdttr dvlemickth qldhsahylr lkflienqiq fyvpkpeedi yellykeiei
      841 cqkitqhiqi eksdassdiy gfslssveee girrlyvngv ketglafkkg lkagdeivei
      901 nkkaaedlds allkdalvqp slcltvrtyp eieegqklmq ppprrlenps dlsdstlaft
      961 gsnqaghslc gdpdssveta peeaeaqdle ssdeadkmsk steqvaafcr slhemnpsds
     1021 sahpqeftgp qlatmrqltd adklrkvice lletertyvk dlnclmeryl kplqketflt
     1081 pdeldvlfgn ltemvafqve flktledgvr lvpdleklek veqfkkvlfs lggsflyyad
     1141 rfklysafca shtkvpkvlv kaktdtafka fldaqnprrq hsstlesyli kpiqrilkyp
     1201 lllkelfalt dvdseehyhl dvaiktmnkv ashinemqki heeygavfdq liaeqtgekk
     1261 evadlsmgdl llhntviwln ppaslgkwkk epelaafvfk tavvlvykdg skqkkklggs
     1321 hrasiyedwd pfrfrhmipl ealqvralas adaetnsvce ivhvkseseg rpertfhlcc
     1381 sspehrkdfl kavhsilrdk hrrqllktes lpssqqyvpf ggkrlcalkg arpamnravs
     1441 apskslgrrr rrlarnrfti dsdavymssp ekepqqpths gdtdrwveeq fdlaqyeeqe
     1501 diketdilsd ddeyceamrg amadqelrer lqaasitssq pcrgdrmrpa mdthasrmtq
     1561 lkkqaalsgi ngdmeghgee viwvrredfv pnrklntel
//
LOCUS       XP_053927799            1599 aa            linear   VRT 09-MAR-2023
DEFINITION  rho guanine nucleotide exchange factor TIAM1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053927799
VERSION     XP_053927799.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071824.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1599
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1599
                     /product="rho guanine nucleotide exchange factor TIAM1
                     isoform X1"
                     /calculated_mol_wt=178836
     Region          434..560
                     /region_name="PH1_Tiam1_2"
                     /note="T-lymphoma invasion and metastasis 1 and 2
                     Pleckstrin Homology (PH) domain, N-terminal domain;
                     cd01230"
                     /db_xref="CDD:269937"
     Region          574..671
                     /region_name="Tiam_CC_Ex"
                     /note="T-lymphoma invasion and metastasis CC-Ex domain;
                     pfam18385"
                     /db_xref="CDD:408184"
     Region          768..834
                     /region_name="Ubl1_cv_Nsp3_N-like"
                     /note="first ubiquitin-like (Ubl) domain located at the
                     N-terminus of coronavirus SARS-CoV non-structural protein
                     3 (Nsp3) and related proteins; cl28922"
                     /db_xref="CDD:475130"
     Region          844..927
                     /region_name="PDZ"
                     /note="Domain present in PSD-95, Dlg, and ZO-1/2;
                     smart00228"
                     /db_xref="CDD:214570"
     Region          1047..1236
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; smart00325"
                     /db_xref="CDD:214619"
     Site            order(1050,1054,1160,1186..1187,1190..1191,1193..1194,
                     1197..1198,1201..1202,1205,1231,1235)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          1238..1409
                     /region_name="PH2_Tiam1_2"
                     /note="T-lymphoma invasion and metastasis 1 and 2
                     Pleckstrin Homology (PH) domain, C-terminal domain;
                     cd01255"
                     /db_xref="CDD:269957"
     CDS             1..1599
                     /gene="TIAM1"
                     /coded_by="XM_054071824.1:795..5594"
                     /db_xref="GeneID:104064769"
ORIGIN      
        1 mgnaesqsve hafygdkhts lgrkhtsrsl rlsnkasrrt rhassgkiih rnsevstrss
       61 stpsipqsla englepfaqe anledfgspi wvdrmdmglr pvsyhtdssv tpsvdsstvl
      121 taasvqsmpd seesrlygde ppflaegngr shryaangtn fmetasfkkk rsksadiwre
      181 dslefslsdl sqehltsnee ilglaeekdt entqgteasd spqplvacqr ansmsdlysp
      241 ktpsatvngg prnafggycr nlvsdildig shkmssvtae dapsysnynt lpcrkshcls
      301 egatnpqish snsmqgrrak ttqdvnageg seftdsgieg aatdtdllsr rsnatnssys
      361 ptasrafigs dsgssstgdg lrqgvyenfr relemsttns enleeagsal sdeqssgtls
      421 spgqsdillt aaqgtvrkag alavknflvh kknkkvesat rrkwkhywvs lkgctlffye
      481 tdgrsgidhn sipkhavwve nsivqavpeh pkkdfvfcls nslgdaflfq tssqtelenw
      541 itaihsacat avarqhhked tvkllkteik kleqkidmde kmkkmgemql ssvtdskkkk
      601 tildqifvwe qnleqfqmdl fryrcylasl qggelpnpkr llafasrptk vamgrlgifs
      661 vssfhalvaa rtgesgvrrr tqamsrsask rrsrfsslwg ldttskkkqg rpsinqvfge
      721 gvdsvkksle gifddavpdg krekeaalss vhqhnpdcdi wvheyftpsw fclpnnqpal
      781 tvirpgdttr dvlemickth qldhsahylr lkflienqiq fyvpkpeedi yellykeiei
      841 cqkitqhiqi eksdassdiy gfslssveee girrlyvngv ketglafkkg lkagdeivei
      901 nkkaaedlds allkdalvqp slcltvrtyp eieegqklmq ppprrlenps dlsdstlaft
      961 gsnqaghslc gdpdssveta peeaeaqdle ssdeadkmsk steqvaafcr slhemnpsds
     1021 sahpqeftgp qlatmrqltd adklrkvice lletertyvk dlnclmeryl kplqketflt
     1081 pdeldvlfgn ltemvafqve flktledgvr lvpdleklek veqfkkvlfs lggsflyyad
     1141 rfklysafca shtkvpkvlv kaktdtafka fldaqnprrq hsstlesyli kpiqrilkyp
     1201 lllkelfalt dvdseehyhl dvaiktmnkv ashinemqki heeygavfdq liaeqtgekk
     1261 evadlsmgdl llhntviwln ppaslgkwkk epelaafvfk tavvlvykdg skqkkklggs
     1321 hrasiyedwd pfrfrhmipl ealqvralas adaetnsvce ivhvkseseg rpertfhlcc
     1381 sspehrkdfl kavhsilrdk hrrqllktes lpssqqyvpf ggkrlcalkg arpamnravs
     1441 apskslgrrr rrlarnrfti dsdavymssp ekepqqpths gdtdrwveeq fdlaqyeeqe
     1501 diketdilsd ddeyceamrg amadqelrer lqaasitssq pcrgdrmrpa mdthasrmtq
     1561 lkkqaalsgi ngdmeghgee viwvrredfv pnrklntel
//
LOCUS       XP_053927805            1599 aa            linear   VRT 09-MAR-2023
DEFINITION  rho guanine nucleotide exchange factor TIAM1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053927805
VERSION     XP_053927805.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071830.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1599
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1599
                     /product="rho guanine nucleotide exchange factor TIAM1
                     isoform X1"
                     /calculated_mol_wt=178836
     Region          434..560
                     /region_name="PH1_Tiam1_2"
                     /note="T-lymphoma invasion and metastasis 1 and 2
                     Pleckstrin Homology (PH) domain, N-terminal domain;
                     cd01230"
                     /db_xref="CDD:269937"
     Region          574..671
                     /region_name="Tiam_CC_Ex"
                     /note="T-lymphoma invasion and metastasis CC-Ex domain;
                     pfam18385"
                     /db_xref="CDD:408184"
     Region          768..834
                     /region_name="Ubl1_cv_Nsp3_N-like"
                     /note="first ubiquitin-like (Ubl) domain located at the
                     N-terminus of coronavirus SARS-CoV non-structural protein
                     3 (Nsp3) and related proteins; cl28922"
                     /db_xref="CDD:475130"
     Region          844..927
                     /region_name="PDZ"
                     /note="Domain present in PSD-95, Dlg, and ZO-1/2;
                     smart00228"
                     /db_xref="CDD:214570"
     Region          1047..1236
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; smart00325"
                     /db_xref="CDD:214619"
     Site            order(1050,1054,1160,1186..1187,1190..1191,1193..1194,
                     1197..1198,1201..1202,1205,1231,1235)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          1238..1409
                     /region_name="PH2_Tiam1_2"
                     /note="T-lymphoma invasion and metastasis 1 and 2
                     Pleckstrin Homology (PH) domain, C-terminal domain;
                     cd01255"
                     /db_xref="CDD:269957"
     CDS             1..1599
                     /gene="TIAM1"
                     /coded_by="XM_054071830.1:646..5445"
                     /db_xref="GeneID:104064769"
ORIGIN      
        1 mgnaesqsve hafygdkhts lgrkhtsrsl rlsnkasrrt rhassgkiih rnsevstrss
       61 stpsipqsla englepfaqe anledfgspi wvdrmdmglr pvsyhtdssv tpsvdsstvl
      121 taasvqsmpd seesrlygde ppflaegngr shryaangtn fmetasfkkk rsksadiwre
      181 dslefslsdl sqehltsnee ilglaeekdt entqgteasd spqplvacqr ansmsdlysp
      241 ktpsatvngg prnafggycr nlvsdildig shkmssvtae dapsysnynt lpcrkshcls
      301 egatnpqish snsmqgrrak ttqdvnageg seftdsgieg aatdtdllsr rsnatnssys
      361 ptasrafigs dsgssstgdg lrqgvyenfr relemsttns enleeagsal sdeqssgtls
      421 spgqsdillt aaqgtvrkag alavknflvh kknkkvesat rrkwkhywvs lkgctlffye
      481 tdgrsgidhn sipkhavwve nsivqavpeh pkkdfvfcls nslgdaflfq tssqtelenw
      541 itaihsacat avarqhhked tvkllkteik kleqkidmde kmkkmgemql ssvtdskkkk
      601 tildqifvwe qnleqfqmdl fryrcylasl qggelpnpkr llafasrptk vamgrlgifs
      661 vssfhalvaa rtgesgvrrr tqamsrsask rrsrfsslwg ldttskkkqg rpsinqvfge
      721 gvdsvkksle gifddavpdg krekeaalss vhqhnpdcdi wvheyftpsw fclpnnqpal
      781 tvirpgdttr dvlemickth qldhsahylr lkflienqiq fyvpkpeedi yellykeiei
      841 cqkitqhiqi eksdassdiy gfslssveee girrlyvngv ketglafkkg lkagdeivei
      901 nkkaaedlds allkdalvqp slcltvrtyp eieegqklmq ppprrlenps dlsdstlaft
      961 gsnqaghslc gdpdssveta peeaeaqdle ssdeadkmsk steqvaafcr slhemnpsds
     1021 sahpqeftgp qlatmrqltd adklrkvice lletertyvk dlnclmeryl kplqketflt
     1081 pdeldvlfgn ltemvafqve flktledgvr lvpdleklek veqfkkvlfs lggsflyyad
     1141 rfklysafca shtkvpkvlv kaktdtafka fldaqnprrq hsstlesyli kpiqrilkyp
     1201 lllkelfalt dvdseehyhl dvaiktmnkv ashinemqki heeygavfdq liaeqtgekk
     1261 evadlsmgdl llhntviwln ppaslgkwkk epelaafvfk tavvlvykdg skqkkklggs
     1321 hrasiyedwd pfrfrhmipl ealqvralas adaetnsvce ivhvkseseg rpertfhlcc
     1381 sspehrkdfl kavhsilrdk hrrqllktes lpssqqyvpf ggkrlcalkg arpamnravs
     1441 apskslgrrr rrlarnrfti dsdavymssp ekepqqpths gdtdrwveeq fdlaqyeeqe
     1501 diketdilsd ddeyceamrg amadqelrer lqaasitssq pcrgdrmrpa mdthasrmtq
     1561 lkkqaalsgi ngdmeghgee viwvrredfv pnrklntel
//
LOCUS       XP_053927813            1599 aa            linear   VRT 09-MAR-2023
DEFINITION  rho guanine nucleotide exchange factor TIAM1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053927813
VERSION     XP_053927813.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071838.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1599
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1599
                     /product="rho guanine nucleotide exchange factor TIAM1
                     isoform X1"
                     /calculated_mol_wt=178836
     Region          434..560
                     /region_name="PH1_Tiam1_2"
                     /note="T-lymphoma invasion and metastasis 1 and 2
                     Pleckstrin Homology (PH) domain, N-terminal domain;
                     cd01230"
                     /db_xref="CDD:269937"
     Region          574..671
                     /region_name="Tiam_CC_Ex"
                     /note="T-lymphoma invasion and metastasis CC-Ex domain;
                     pfam18385"
                     /db_xref="CDD:408184"
     Region          768..834
                     /region_name="Ubl1_cv_Nsp3_N-like"
                     /note="first ubiquitin-like (Ubl) domain located at the
                     N-terminus of coronavirus SARS-CoV non-structural protein
                     3 (Nsp3) and related proteins; cl28922"
                     /db_xref="CDD:475130"
     Region          844..927
                     /region_name="PDZ"
                     /note="Domain present in PSD-95, Dlg, and ZO-1/2;
                     smart00228"
                     /db_xref="CDD:214570"
     Region          1047..1236
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; smart00325"
                     /db_xref="CDD:214619"
     Site            order(1050,1054,1160,1186..1187,1190..1191,1193..1194,
                     1197..1198,1201..1202,1205,1231,1235)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          1238..1409
                     /region_name="PH2_Tiam1_2"
                     /note="T-lymphoma invasion and metastasis 1 and 2
                     Pleckstrin Homology (PH) domain, C-terminal domain;
                     cd01255"
                     /db_xref="CDD:269957"
     CDS             1..1599
                     /gene="TIAM1"
                     /coded_by="XM_054071838.1:323..5122"
                     /db_xref="GeneID:104064769"
ORIGIN      
        1 mgnaesqsve hafygdkhts lgrkhtsrsl rlsnkasrrt rhassgkiih rnsevstrss
       61 stpsipqsla englepfaqe anledfgspi wvdrmdmglr pvsyhtdssv tpsvdsstvl
      121 taasvqsmpd seesrlygde ppflaegngr shryaangtn fmetasfkkk rsksadiwre
      181 dslefslsdl sqehltsnee ilglaeekdt entqgteasd spqplvacqr ansmsdlysp
      241 ktpsatvngg prnafggycr nlvsdildig shkmssvtae dapsysnynt lpcrkshcls
      301 egatnpqish snsmqgrrak ttqdvnageg seftdsgieg aatdtdllsr rsnatnssys
      361 ptasrafigs dsgssstgdg lrqgvyenfr relemsttns enleeagsal sdeqssgtls
      421 spgqsdillt aaqgtvrkag alavknflvh kknkkvesat rrkwkhywvs lkgctlffye
      481 tdgrsgidhn sipkhavwve nsivqavpeh pkkdfvfcls nslgdaflfq tssqtelenw
      541 itaihsacat avarqhhked tvkllkteik kleqkidmde kmkkmgemql ssvtdskkkk
      601 tildqifvwe qnleqfqmdl fryrcylasl qggelpnpkr llafasrptk vamgrlgifs
      661 vssfhalvaa rtgesgvrrr tqamsrsask rrsrfsslwg ldttskkkqg rpsinqvfge
      721 gvdsvkksle gifddavpdg krekeaalss vhqhnpdcdi wvheyftpsw fclpnnqpal
      781 tvirpgdttr dvlemickth qldhsahylr lkflienqiq fyvpkpeedi yellykeiei
      841 cqkitqhiqi eksdassdiy gfslssveee girrlyvngv ketglafkkg lkagdeivei
      901 nkkaaedlds allkdalvqp slcltvrtyp eieegqklmq ppprrlenps dlsdstlaft
      961 gsnqaghslc gdpdssveta peeaeaqdle ssdeadkmsk steqvaafcr slhemnpsds
     1021 sahpqeftgp qlatmrqltd adklrkvice lletertyvk dlnclmeryl kplqketflt
     1081 pdeldvlfgn ltemvafqve flktledgvr lvpdleklek veqfkkvlfs lggsflyyad
     1141 rfklysafca shtkvpkvlv kaktdtafka fldaqnprrq hsstlesyli kpiqrilkyp
     1201 lllkelfalt dvdseehyhl dvaiktmnkv ashinemqki heeygavfdq liaeqtgekk
     1261 evadlsmgdl llhntviwln ppaslgkwkk epelaafvfk tavvlvykdg skqkkklggs
     1321 hrasiyedwd pfrfrhmipl ealqvralas adaetnsvce ivhvkseseg rpertfhlcc
     1381 sspehrkdfl kavhsilrdk hrrqllktes lpssqqyvpf ggkrlcalkg arpamnravs
     1441 apskslgrrr rrlarnrfti dsdavymssp ekepqqpths gdtdrwveeq fdlaqyeeqe
     1501 diketdilsd ddeyceamrg amadqelrer lqaasitssq pcrgdrmrpa mdthasrmtq
     1561 lkkqaalsgi ngdmeghgee viwvrredfv pnrklntel
//
LOCUS       XP_053927822            1598 aa            linear   VRT 09-MAR-2023
DEFINITION  rho guanine nucleotide exchange factor TIAM1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053927822
VERSION     XP_053927822.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071847.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1598
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1598
                     /product="rho guanine nucleotide exchange factor TIAM1
                     isoform X2"
                     /calculated_mol_wt=178765
     Region          434..560
                     /region_name="PH1_Tiam1_2"
                     /note="T-lymphoma invasion and metastasis 1 and 2
                     Pleckstrin Homology (PH) domain, N-terminal domain;
                     cd01230"
                     /db_xref="CDD:269937"
     Region          574..671
                     /region_name="Tiam_CC_Ex"
                     /note="T-lymphoma invasion and metastasis CC-Ex domain;
                     pfam18385"
                     /db_xref="CDD:408184"
     Region          768..834
                     /region_name="Ubl1_cv_Nsp3_N-like"
                     /note="first ubiquitin-like (Ubl) domain located at the
                     N-terminus of coronavirus SARS-CoV non-structural protein
                     3 (Nsp3) and related proteins; cl28922"
                     /db_xref="CDD:475130"
     Region          844..927
                     /region_name="PDZ"
                     /note="Domain present in PSD-95, Dlg, and ZO-1/2;
                     smart00228"
                     /db_xref="CDD:214570"
     Region          1046..1235
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; smart00325"
                     /db_xref="CDD:214619"
     Site            order(1049,1053,1159,1185..1186,1189..1190,1192..1193,
                     1196..1197,1200..1201,1204,1230,1234)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          1237..1408
                     /region_name="PH2_Tiam1_2"
                     /note="T-lymphoma invasion and metastasis 1 and 2
                     Pleckstrin Homology (PH) domain, C-terminal domain;
                     cd01255"
                     /db_xref="CDD:269957"
     CDS             1..1598
                     /gene="TIAM1"
                     /coded_by="XM_054071847.1:706..5502"
                     /db_xref="GeneID:104064769"
ORIGIN      
        1 mgnaesqsve hafygdkhts lgrkhtsrsl rlsnkasrrt rhassgkiih rnsevstrss
       61 stpsipqsla englepfaqe anledfgspi wvdrmdmglr pvsyhtdssv tpsvdsstvl
      121 taasvqsmpd seesrlygde ppflaegngr shryaangtn fmetasfkkk rsksadiwre
      181 dslefslsdl sqehltsnee ilglaeekdt entqgteasd spqplvacqr ansmsdlysp
      241 ktpsatvngg prnafggycr nlvsdildig shkmssvtae dapsysnynt lpcrkshcls
      301 egatnpqish snsmqgrrak ttqdvnageg seftdsgieg aatdtdllsr rsnatnssys
      361 ptasrafigs dsgssstgdg lrqgvyenfr relemsttns enleeagsal sdeqssgtls
      421 spgqsdillt aaqgtvrkag alavknflvh kknkkvesat rrkwkhywvs lkgctlffye
      481 tdgrsgidhn sipkhavwve nsivqavpeh pkkdfvfcls nslgdaflfq tssqtelenw
      541 itaihsacat avarqhhked tvkllkteik kleqkidmde kmkkmgemql ssvtdskkkk
      601 tildqifvwe qnleqfqmdl fryrcylasl qggelpnpkr llafasrptk vamgrlgifs
      661 vssfhalvaa rtgesgvrrr tqamsrsask rrsrfsslwg ldttskkkqg rpsinqvfge
      721 gvdsvkksle gifddavpdg krekeaalss vhqhnpdcdi wvheyftpsw fclpnnqpal
      781 tvirpgdttr dvlemickth qldhsahylr lkflienqiq fyvpkpeedi yellykeiei
      841 cqkitqhiqi eksdassdiy gfslssveee girrlyvngv ketglafkkg lkagdeivei
      901 nkkaaedlds allkdalvqp slcltvrtyp eieegqklmq ppprrlenps dlsdstlaft
      961 gsnqghslcg dpdssvetap eeaeaqdles sdeadkmsks teqvaafcrs lhemnpsdss
     1021 ahpqeftgpq latmrqltda dklrkvicel letertyvkd lnclmerylk plqketfltp
     1081 deldvlfgnl temvafqvef lktledgvrl vpdleklekv eqfkkvlfsl ggsflyyadr
     1141 fklysafcas htkvpkvlvk aktdtafkaf ldaqnprrqh sstlesylik piqrilkypl
     1201 llkelfaltd vdseehyhld vaiktmnkva shinemqkih eeygavfdql iaeqtgekke
     1261 vadlsmgdll lhntviwlnp paslgkwkke pelaafvfkt avvlvykdgs kqkkklggsh
     1321 rasiyedwdp frfrhmiple alqvralasa daetnsvcei vhvksesegr pertfhlccs
     1381 spehrkdflk avhsilrdkh rrqllktesl pssqqyvpfg gkrlcalkga rpamnravsa
     1441 pskslgrrrr rlarnrftid sdavymsspe kepqqpthsg dtdrwveeqf dlaqyeeqed
     1501 iketdilsdd deyceamrga madqelrerl qaasitssqp crgdrmrpam dthasrmtql
     1561 kkqaalsgin gdmeghgeev iwvrredfvp nrklntel
//
LOCUS       XP_053927828            1574 aa            linear   VRT 09-MAR-2023
DEFINITION  rho guanine nucleotide exchange factor TIAM1 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053927828
VERSION     XP_053927828.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071853.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1574
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1574
                     /product="rho guanine nucleotide exchange factor TIAM1
                     isoform X3"
                     /calculated_mol_wt=176124
     Region          434..560
                     /region_name="PH1_Tiam1_2"
                     /note="T-lymphoma invasion and metastasis 1 and 2
                     Pleckstrin Homology (PH) domain, N-terminal domain;
                     cd01230"
                     /db_xref="CDD:269937"
     Region          574..671
                     /region_name="Tiam_CC_Ex"
                     /note="T-lymphoma invasion and metastasis CC-Ex domain;
                     pfam18385"
                     /db_xref="CDD:408184"
     Region          768..834
                     /region_name="Ubl1_cv_Nsp3_N-like"
                     /note="first ubiquitin-like (Ubl) domain located at the
                     N-terminus of coronavirus SARS-CoV non-structural protein
                     3 (Nsp3) and related proteins; cl28922"
                     /db_xref="CDD:475130"
     Region          844..927
                     /region_name="PDZ"
                     /note="Domain present in PSD-95, Dlg, and ZO-1/2;
                     smart00228"
                     /db_xref="CDD:214570"
     Region          1022..1211
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; smart00325"
                     /db_xref="CDD:214619"
     Site            order(1025,1029,1135,1161..1162,1165..1166,1168..1169,
                     1172..1173,1176..1177,1180,1206,1210)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          1213..1384
                     /region_name="PH2_Tiam1_2"
                     /note="T-lymphoma invasion and metastasis 1 and 2
                     Pleckstrin Homology (PH) domain, C-terminal domain;
                     cd01255"
                     /db_xref="CDD:269957"
     CDS             1..1574
                     /gene="TIAM1"
                     /coded_by="XM_054071853.1:706..5430"
                     /db_xref="GeneID:104064769"
ORIGIN      
        1 mgnaesqsve hafygdkhts lgrkhtsrsl rlsnkasrrt rhassgkiih rnsevstrss
       61 stpsipqsla englepfaqe anledfgspi wvdrmdmglr pvsyhtdssv tpsvdsstvl
      121 taasvqsmpd seesrlygde ppflaegngr shryaangtn fmetasfkkk rsksadiwre
      181 dslefslsdl sqehltsnee ilglaeekdt entqgteasd spqplvacqr ansmsdlysp
      241 ktpsatvngg prnafggycr nlvsdildig shkmssvtae dapsysnynt lpcrkshcls
      301 egatnpqish snsmqgrrak ttqdvnageg seftdsgieg aatdtdllsr rsnatnssys
      361 ptasrafigs dsgssstgdg lrqgvyenfr relemsttns enleeagsal sdeqssgtls
      421 spgqsdillt aaqgtvrkag alavknflvh kknkkvesat rrkwkhywvs lkgctlffye
      481 tdgrsgidhn sipkhavwve nsivqavpeh pkkdfvfcls nslgdaflfq tssqtelenw
      541 itaihsacat avarqhhked tvkllkteik kleqkidmde kmkkmgemql ssvtdskkkk
      601 tildqifvwe qnleqfqmdl fryrcylasl qggelpnpkr llafasrptk vamgrlgifs
      661 vssfhalvaa rtgesgvrrr tqamsrsask rrsrfsslwg ldttskkkqg rpsinqvfge
      721 gvdsvkksle gifddavpdg krekeaalss vhqhnpdcdi wvheyftpsw fclpnnqpal
      781 tvirpgdttr dvlemickth qldhsahylr lkflienqiq fyvpkpeedi yellykeiei
      841 cqkitqhiqi eksdassdiy gfslssveee girrlyvngv ketglafkkg lkagdeivei
      901 nkkaaedlds allkdalvqp slcltvrtyp eieegqklmq ppprrlenps dlsdstlaft
      961 gsnqaghslc gdpdssveta peeaeaqdle ssdeadkmsk eftgpqlatm rqltdadklr
     1021 kvicellete rtyvkdlncl merylkplqk etfltpdeld vlfgnltemv afqveflktl
     1081 edgvrlvpdl eklekveqfk kvlfslggsf lyyadrfkly safcashtkv pkvlvkaktd
     1141 tafkafldaq nprrqhsstl esylikpiqr ilkyplllke lfaltdvdse ehyhldvaik
     1201 tmnkvashin emqkiheeyg avfdqliaeq tgekkevadl smgdlllhnt viwlnppasl
     1261 gkwkkepela afvfktavvl vykdgskqkk klggshrasi yedwdpfrfr hmiplealqv
     1321 ralasadaet nsvceivhvk sesegrpert fhlccsspeh rkdflkavhs ilrdkhrrql
     1381 lkteslpssq qyvpfggkrl calkgarpam nravsapsks lgrrrrrlar nrftidsdav
     1441 ymsspekepq qpthsgdtdr wveeqfdlaq yeeqediket dilsdddeyc eamrgamadq
     1501 elrerlqaas itssqpcrgd rmrpamdtha srmtqlkkqa alsgingdme ghgeeviwvr
     1561 redfvpnrkl ntel
//
LOCUS       XP_053927831            1573 aa            linear   VRT 09-MAR-2023
DEFINITION  rho guanine nucleotide exchange factor TIAM1 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053927831
VERSION     XP_053927831.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071856.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1573
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1573
                     /product="rho guanine nucleotide exchange factor TIAM1
                     isoform X4"
                     /calculated_mol_wt=176053
     Region          434..560
                     /region_name="PH1_Tiam1_2"
                     /note="T-lymphoma invasion and metastasis 1 and 2
                     Pleckstrin Homology (PH) domain, N-terminal domain;
                     cd01230"
                     /db_xref="CDD:269937"
     Region          574..671
                     /region_name="Tiam_CC_Ex"
                     /note="T-lymphoma invasion and metastasis CC-Ex domain;
                     pfam18385"
                     /db_xref="CDD:408184"
     Region          768..834
                     /region_name="Ubl1_cv_Nsp3_N-like"
                     /note="first ubiquitin-like (Ubl) domain located at the
                     N-terminus of coronavirus SARS-CoV non-structural protein
                     3 (Nsp3) and related proteins; cl28922"
                     /db_xref="CDD:475130"
     Region          844..927
                     /region_name="PDZ"
                     /note="Domain present in PSD-95, Dlg, and ZO-1/2;
                     smart00228"
                     /db_xref="CDD:214570"
     Region          1021..1210
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; smart00325"
                     /db_xref="CDD:214619"
     Site            order(1024,1028,1134,1160..1161,1164..1165,1167..1168,
                     1171..1172,1175..1176,1179,1205,1209)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          1212..1383
                     /region_name="PH2_Tiam1_2"
                     /note="T-lymphoma invasion and metastasis 1 and 2
                     Pleckstrin Homology (PH) domain, C-terminal domain;
                     cd01255"
                     /db_xref="CDD:269957"
     CDS             1..1573
                     /gene="TIAM1"
                     /coded_by="XM_054071856.1:706..5427"
                     /db_xref="GeneID:104064769"
ORIGIN      
        1 mgnaesqsve hafygdkhts lgrkhtsrsl rlsnkasrrt rhassgkiih rnsevstrss
       61 stpsipqsla englepfaqe anledfgspi wvdrmdmglr pvsyhtdssv tpsvdsstvl
      121 taasvqsmpd seesrlygde ppflaegngr shryaangtn fmetasfkkk rsksadiwre
      181 dslefslsdl sqehltsnee ilglaeekdt entqgteasd spqplvacqr ansmsdlysp
      241 ktpsatvngg prnafggycr nlvsdildig shkmssvtae dapsysnynt lpcrkshcls
      301 egatnpqish snsmqgrrak ttqdvnageg seftdsgieg aatdtdllsr rsnatnssys
      361 ptasrafigs dsgssstgdg lrqgvyenfr relemsttns enleeagsal sdeqssgtls
      421 spgqsdillt aaqgtvrkag alavknflvh kknkkvesat rrkwkhywvs lkgctlffye
      481 tdgrsgidhn sipkhavwve nsivqavpeh pkkdfvfcls nslgdaflfq tssqtelenw
      541 itaihsacat avarqhhked tvkllkteik kleqkidmde kmkkmgemql ssvtdskkkk
      601 tildqifvwe qnleqfqmdl fryrcylasl qggelpnpkr llafasrptk vamgrlgifs
      661 vssfhalvaa rtgesgvrrr tqamsrsask rrsrfsslwg ldttskkkqg rpsinqvfge
      721 gvdsvkksle gifddavpdg krekeaalss vhqhnpdcdi wvheyftpsw fclpnnqpal
      781 tvirpgdttr dvlemickth qldhsahylr lkflienqiq fyvpkpeedi yellykeiei
      841 cqkitqhiqi eksdassdiy gfslssveee girrlyvngv ketglafkkg lkagdeivei
      901 nkkaaedlds allkdalvqp slcltvrtyp eieegqklmq ppprrlenps dlsdstlaft
      961 gsnqghslcg dpdssvetap eeaeaqdles sdeadkmske ftgpqlatmr qltdadklrk
     1021 vicelleter tyvkdlnclm erylkplqke tfltpdeldv lfgnltemva fqveflktle
     1081 dgvrlvpdle klekveqfkk vlfslggsfl yyadrfklys afcashtkvp kvlvkaktdt
     1141 afkafldaqn prrqhsstle sylikpiqri lkyplllkel faltdvdsee hyhldvaikt
     1201 mnkvashine mqkiheeyga vfdqliaeqt gekkevadls mgdlllhntv iwlnppaslg
     1261 kwkkepelaa fvfktavvlv ykdgskqkkk lggshrasiy edwdpfrfrh miplealqvr
     1321 alasadaetn svceivhvks esegrpertf hlccsspehr kdflkavhsi lrdkhrrqll
     1381 kteslpssqq yvpfggkrlc alkgarpamn ravsapsksl grrrrrlarn rftidsdavy
     1441 msspekepqq pthsgdtdrw veeqfdlaqy eeqediketd ilsdddeyce amrgamadqe
     1501 lrerlqaasi tssqpcrgdr mrpamdthas rmtqlkkqaa lsgingdmeg hgeeviwvrr
     1561 edfvpnrkln tel
//
LOCUS       XP_053927844             628 aa            linear   VRT 09-MAR-2023
DEFINITION  rho guanine nucleotide exchange factor TIAM1 isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053927844
VERSION     XP_053927844.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071869.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..628
                     /product="rho guanine nucleotide exchange factor TIAM1
                     isoform X5"
                     /calculated_mol_wt=71796
     Region          76..265
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; smart00325"
                     /db_xref="CDD:214619"
     Site            order(79,83,189,215..216,219..220,222..223,226..227,
                     230..231,234,260,264)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          267..438
                     /region_name="PH2_Tiam1_2"
                     /note="T-lymphoma invasion and metastasis 1 and 2
                     Pleckstrin Homology (PH) domain, C-terminal domain;
                     cd01255"
                     /db_xref="CDD:269957"
     CDS             1..628
                     /gene="TIAM1"
                     /coded_by="XM_054071869.1:344..2230"
                     /db_xref="GeneID:104064769"
ORIGIN      
        1 msaiwrvnrk fknesagrag dslyrmlyls teqvaafcrs lhemnpsdss ahpqeftgpq
       61 latmrqltda dklrkvicel letertyvkd lnclmerylk plqketfltp deldvlfgnl
      121 temvafqvef lktledgvrl vpdleklekv eqfkkvlfsl ggsflyyadr fklysafcas
      181 htkvpkvlvk aktdtafkaf ldaqnprrqh sstlesylik piqrilkypl llkelfaltd
      241 vdseehyhld vaiktmnkva shinemqkih eeygavfdql iaeqtgekke vadlsmgdll
      301 lhntviwlnp paslgkwkke pelaafvfkt avvlvykdgs kqkkklggsh rasiyedwdp
      361 frfrhmiple alqvralasa daetnsvcei vhvksesegr pertfhlccs spehrkdflk
      421 avhsilrdkh rrqllktesl pssqqyvpfg gkrlcalkga rpamnravsa pskslgrrrr
      481 rlarnrftid sdavymsspe kepqqpthsg dtdrwveeqf dlaqyeeqed iketdilsdd
      541 deyceamrga madqelrerl qaasitssqp crgdrmrpam dthasrmtql kkqaalsgin
      601 gdmeghgeev iwvrredfvp nrklntel
//
LOCUS       XP_053927853             603 aa            linear   VRT 09-MAR-2023
DEFINITION  rho guanine nucleotide exchange factor TIAM1 isoform X6 [Cuculus
            canorus].
ACCESSION   XP_053927853
VERSION     XP_053927853.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071878.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..603
                     /product="rho guanine nucleotide exchange factor TIAM1
                     isoform X6"
                     /calculated_mol_wt=69084
     Region          51..240
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; smart00325"
                     /db_xref="CDD:214619"
     Site            order(54,58,164,190..191,194..195,197..198,201..202,
                     205..206,209,235,239)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          242..413
                     /region_name="PH2_Tiam1_2"
                     /note="T-lymphoma invasion and metastasis 1 and 2
                     Pleckstrin Homology (PH) domain, C-terminal domain;
                     cd01255"
                     /db_xref="CDD:269957"
     CDS             1..603
                     /gene="TIAM1"
                     /coded_by="XM_054071878.1:344..2155"
                     /db_xref="GeneID:104064769"
ORIGIN      
        1 msaiwrvnrk fknesagrag dslyrmlyle ftgpqlatmr qltdadklrk vicelleter
       61 tyvkdlnclm erylkplqke tfltpdeldv lfgnltemva fqveflktle dgvrlvpdle
      121 klekveqfkk vlfslggsfl yyadrfklys afcashtkvp kvlvkaktdt afkafldaqn
      181 prrqhsstle sylikpiqri lkyplllkel faltdvdsee hyhldvaikt mnkvashine
      241 mqkiheeyga vfdqliaeqt gekkevadls mgdlllhntv iwlnppaslg kwkkepelaa
      301 fvfktavvlv ykdgskqkkk lggshrasiy edwdpfrfrh miplealqvr alasadaetn
      361 svceivhvks esegrpertf hlccsspehr kdflkavhsi lrdkhrrqll kteslpssqq
      421 yvpfggkrlc alkgarpamn ravsapsksl grrrrrlarn rftidsdavy msspekepqq
      481 pthsgdtdrw veeqfdlaqy eeqediketd ilsdddeyce amrgamadqe lrerlqaasi
      541 tssqpcrgdr mrpamdthas rmtqlkkqaa lsgingdmeg hgeeviwvrr edfvpnrkln
      601 tel
//
LOCUS       XP_053927865             509 aa            linear   VRT 09-MAR-2023
DEFINITION  SAM domain-containing protein SAMSN-1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053927865
VERSION     XP_053927865.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071890.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..509
                     /product="SAM domain-containing protein SAMSN-1 isoform
                     X1"
                     /calculated_mol_wt=56926
     Region          158..301
                     /region_name="SLY"
                     /note="Lymphocyte signaling adaptor protein; pfam12485"
                     /db_xref="CDD:463602"
     Region          304..355
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(309,311,314,320,338..339,352,354..355)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212756"
     Region          376..441
                     /region_name="SAM_SAMSN1"
                     /note="SAM domain of SAMSN1 subfamily; cd09561"
                     /db_xref="CDD:188960"
     CDS             1..509
                     /gene="LOC104061591"
                     /coded_by="XM_054071890.1:50..1579"
                     /db_xref="GeneID:104061591"
ORIGIN      
        1 mgtlkrlqkl vrtkktstqs ledvknillp lntledayls eedeealtsc mkltksqekk
       61 swkdnmrtke gtdpsadfis aslgpshtsr lnnlgtisir setefhlwse wkpfpdnqlc
      121 pcdfliskie ewenctcssh qphltysltd mdlqyswrts sfgsfdrfrh hsisktddsa
      181 emseletisd igdgvqnkaa nnggslgkkm raisltmrkk mgkkyikals edmneegkdd
      241 sdpgggihpe kvslkasdsm eslyslnsgq ssssgvtscs dgtsnrdslr fedevpytgp
      301 fcgrakvhtd ftpspydtds lkikkgdiid iicktpmgiw tgmlnnkvgn fkfiyvdiil
      361 edeaaprkik phrgskrtkp ktlqelldcv hlqeyastll lngyetledl kdlqeshlie
      421 lnisnpedra rllsaienlq dydieqqqks edgqekqsls phhgfnksql ndcprdsgcy
      481 tssensdngk eeadsetlsd mvqsiaise
//
LOCUS       XP_053927874             457 aa            linear   VRT 09-MAR-2023
DEFINITION  SAM domain-containing protein SAMSN-1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053927874
VERSION     XP_053927874.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071899.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..457
                     /product="SAM domain-containing protein SAMSN-1 isoform
                     X2"
                     /calculated_mol_wt=51100
     Region          106..249
                     /region_name="SLY"
                     /note="Lymphocyte signaling adaptor protein; pfam12485"
                     /db_xref="CDD:463602"
     Region          252..303
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(257,259,262,268,286..287,300,302..303)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212756"
     Region          324..389
                     /region_name="SAM_SAMSN1"
                     /note="SAM domain of SAMSN1 subfamily; cd09561"
                     /db_xref="CDD:188960"
     CDS             1..457
                     /gene="LOC104061591"
                     /coded_by="XM_054071899.1:16..1389"
                     /db_xref="GeneID:104061591"
ORIGIN      
        1 mgtlkrlqkl vrtkktstqs ledvknillp lspshtsrln nlgtisirse tefhlwsewk
       61 pfpdnqlcpc dfliskieew enctcsshqp hltysltdmd lqyswrtssf gsfdrfrhhs
      121 isktddsaem seletisdig dgvqnkaann ggslgkkmra isltmrkkmg kkyikalsed
      181 mneegkddsd pgggihpekv slkasdsmes lyslnsgqss ssgvtscsdg tsnrdslrfe
      241 devpytgpfc grakvhtdft pspydtdslk ikkgdiidii cktpmgiwtg mlnnkvgnfk
      301 fiyvdiiled eaaprkikph rgskrtkpkt lqelldcvhl qeyastllln gyetledlkd
      361 lqeshlieln isnpedrarl lsaienlqdy dieqqqksed gqekqslsph hgfnksqlnd
      421 cprdsgcyts sensdngkee adsetlsdmv qsiaise
//
LOCUS       XP_009561839             371 aa            linear   VRT 09-MAR-2023
DEFINITION  SAM domain-containing protein SAMSN-1 isoform X3 [Cuculus canorus].
ACCESSION   XP_009561839
VERSION     XP_009561839.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563544.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561839.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..371
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..371
                     /product="SAM domain-containing protein SAMSN-1 isoform
                     X3"
                     /calculated_mol_wt=41061
     Region          17..163
                     /region_name="SLY"
                     /note="Lymphocyte signaling adaptor protein; pfam12485"
                     /db_xref="CDD:463602"
     Region          166..217
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(171,173,176,182,200..201,214,216..217)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212756"
     Region          238..303
                     /region_name="SAM_SAMSN1"
                     /note="SAM domain of SAMSN1 subfamily; cd09561"
                     /db_xref="CDD:188960"
     CDS             1..371
                     /gene="LOC104061591"
                     /coded_by="XM_009563544.2:1057..2172"
                     /db_xref="GeneID:104061591"
ORIGIN      
        1 mlkrkpsnvs dkeksqkpkr tssfgsfdrf rhhsisktdd saemseleti sdigdgvqnk
       61 aannggslgk kmraisltmr kkmgkkyika lsedmneegk ddsdpgggih pekvslkasd
      121 smeslyslns gqssssgvts csdgtsnrds lrfedevpyt gpfcgrakvh tdftpspydt
      181 dslkikkgdi idiicktpmg iwtgmlnnkv gnfkfiyvdi iledeaaprk ikphrgskrt
      241 kpktlqelld cvhlqeyast lllngyetle dlkdlqeshl ielnisnped rarllsaien
      301 lqdydieqqq ksedgqekqs lsphhgfnks qlndcprdsg cytssensdn gkeeadsetl
      361 sdmvqsiais e
//
LOCUS       XP_053927891            1054 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053927891
VERSION     XP_053927891.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071916.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1054
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1054
                     /product="disks large homolog 2 isoform X1"
                     /calculated_mol_wt=118392
     Region          7..64
                     /region_name="L27_1"
                     /note="pfam09058"
                     /db_xref="CDD:462665"
     Region          184..266
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          265..353
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(276..282,299,302,332,336,339..340)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          362..446
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(371..377,394,397,427,431,434..435)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          447..515
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          588..678
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(600..606,617,620,650,654,657..658)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          704..777
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(712,734..735)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(715,717,720,729,747..748,767,769..770)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          863..1041
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..1054
                     /gene="DLG2"
                     /coded_by="XM_054071916.1:1204..4368"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mpvkkkdtdr almlleeyck klrkpeeqql kkairkvmgi fksslfqall diqefyevtl
       61 lnsqksyeqk ieeanqvaek wekttsatdh enlqknqesa asngskgseq fgednkenqt
      121 fenyvvdmkt kqshgrcpsh kcsvetpawm piqhstkgqe eenptgrglq lgpfpemewt
      181 ntqkyryqde daphdhtlpr lthevrgpel vhvseknlsq ienvhgyvlq shisplkasp
      241 apiivntdtl dtipyvngte ieyefeeitl ergnsglgfs iaggtdnphi gddpgifitk
      301 iipggaaaed grlrvndcil rvnevdvsev shskavealk eagsivrlyv rrrrpiletv
      361 veiklfkgpk glgfsiaggv gnqhipgdns iyvtkiidgg aaqkdgrlqv gdrllmvnny
      421 sleevtheea vailkntsdv vylkvgkptt iymtdpygpp dithsysppm enhilssgnn
      481 gtleykasla pispgryspi pkhmlveddy trppepvyst vnklcdkpps prhyspvecd
      541 ksflltapyp hyhvgllpds eitshsqhst atrpptvslq rtisvegepr kiilhkgstg
      601 lgfnivgged gegifvsfil aggpadlsge lqrgdqilsv ngidlrgath eqaaaalkga
      661 gqtvtiiaqy qpeeyarfea kihdlreqmm nhsmssgsgs lrtnqkrsly vramfdydks
      721 kdsglpsqgl sfkygdilhv inasddewwq arrvtlegds eemgvipskr rverkerarl
      781 ktvkfnakpg vidakgsfnd krkknfifsr kfpfykskeh seqetsdpeq hvssnasdse
      841 ssyrgqedci lsyepvtrqe inytrpviil gpmkdrindd lisefpdkfg scvphttrpk
      901 rdyevdgrdy hfvisreqme kdiqehkfie agqyndnlyg tsvqsvrfva ergkhcildv
      961 sgnaikrlqv aqlypiaifi kpksweplme mnkrlteeqa kktydraikl eqefgeyfta
     1021 ivqgdsledi ynqcklviee qsgpfiwips kekl
//
LOCUS       XP_053927898            1054 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053927898
VERSION     XP_053927898.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071923.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1054
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1054
                     /product="disks large homolog 2 isoform X1"
                     /calculated_mol_wt=118392
     Region          7..64
                     /region_name="L27_1"
                     /note="pfam09058"
                     /db_xref="CDD:462665"
     Region          184..266
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          265..353
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(276..282,299,302,332,336,339..340)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          362..446
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(371..377,394,397,427,431,434..435)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          447..515
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          588..678
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(600..606,617,620,650,654,657..658)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          704..777
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(712,734..735)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(715,717,720,729,747..748,767,769..770)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          863..1041
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..1054
                     /gene="DLG2"
                     /coded_by="XM_054071923.1:1192..4356"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mpvkkkdtdr almlleeyck klrkpeeqql kkairkvmgi fksslfqall diqefyevtl
       61 lnsqksyeqk ieeanqvaek wekttsatdh enlqknqesa asngskgseq fgednkenqt
      121 fenyvvdmkt kqshgrcpsh kcsvetpawm piqhstkgqe eenptgrglq lgpfpemewt
      181 ntqkyryqde daphdhtlpr lthevrgpel vhvseknlsq ienvhgyvlq shisplkasp
      241 apiivntdtl dtipyvngte ieyefeeitl ergnsglgfs iaggtdnphi gddpgifitk
      301 iipggaaaed grlrvndcil rvnevdvsev shskavealk eagsivrlyv rrrrpiletv
      361 veiklfkgpk glgfsiaggv gnqhipgdns iyvtkiidgg aaqkdgrlqv gdrllmvnny
      421 sleevtheea vailkntsdv vylkvgkptt iymtdpygpp dithsysppm enhilssgnn
      481 gtleykasla pispgryspi pkhmlveddy trppepvyst vnklcdkpps prhyspvecd
      541 ksflltapyp hyhvgllpds eitshsqhst atrpptvslq rtisvegepr kiilhkgstg
      601 lgfnivgged gegifvsfil aggpadlsge lqrgdqilsv ngidlrgath eqaaaalkga
      661 gqtvtiiaqy qpeeyarfea kihdlreqmm nhsmssgsgs lrtnqkrsly vramfdydks
      721 kdsglpsqgl sfkygdilhv inasddewwq arrvtlegds eemgvipskr rverkerarl
      781 ktvkfnakpg vidakgsfnd krkknfifsr kfpfykskeh seqetsdpeq hvssnasdse
      841 ssyrgqedci lsyepvtrqe inytrpviil gpmkdrindd lisefpdkfg scvphttrpk
      901 rdyevdgrdy hfvisreqme kdiqehkfie agqyndnlyg tsvqsvrfva ergkhcildv
      961 sgnaikrlqv aqlypiaifi kpksweplme mnkrlteeqa kktydraikl eqefgeyfta
     1021 ivqgdsledi ynqcklviee qsgpfiwips kekl
//
LOCUS       XP_053927905            1053 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053927905
VERSION     XP_053927905.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071930.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1053
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1053
                     /product="disks large homolog 2 isoform X2"
                     /calculated_mol_wt=118264
     Region          7..64
                     /region_name="L27_1"
                     /note="pfam09058"
                     /db_xref="CDD:462665"
     Region          183..265
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          264..352
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(275..281,298,301,331,335,338..339)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          361..445
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(370..376,393,396,426,430,433..434)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          446..514
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          587..677
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(599..605,616,619,649,653,656..657)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          703..776
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(711,733..734)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(714,716,719,728,746..747,766,768..769)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          862..1040
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..1053
                     /gene="DLG2"
                     /coded_by="XM_054071930.1:1521..4682"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mpvkkkdtdr almlleeyck klrkpeeqql kkairkvmgi fksslfqall diqefyevtl
       61 lnsqksyeqk ieeanqvaek wekttsatdh enlqknqesa asngskgseq fgednkenqt
      121 fenyvvdmkt kshgrcpshk csvetpawmp iqhstkgqee enptgrglql gpfpemewtn
      181 tqkyryqded aphdhtlprl thevrgpelv hvseknlsqi envhgyvlqs hisplkaspa
      241 piivntdtld tipyvngtei eyefeeitle rgnsglgfsi aggtdnphig ddpgifitki
      301 ipggaaaedg rlrvndcilr vnevdvsevs hskavealke agsivrlyvr rrrpiletvv
      361 eiklfkgpkg lgfsiaggvg nqhipgdnsi yvtkiidgga aqkdgrlqvg drllmvnnys
      421 leevtheeav ailkntsdvv ylkvgkptti ymtdpygppd ithsysppme nhilssgnng
      481 tleykaslap ispgryspip khmlveddyt rppepvystv nklcdkppsp rhyspvecdk
      541 sflltapyph yhvgllpdse itshsqhsta trpptvslqr tisvegeprk iilhkgstgl
      601 gfnivggedg egifvsfila ggpadlsgel qrgdqilsvn gidlrgathe qaaaalkgag
      661 qtvtiiaqyq peeyarfeak ihdlreqmmn hsmssgsgsl rtnqkrslyv ramfdydksk
      721 dsglpsqgls fkygdilhvi nasddewwqa rrvtlegdse emgvipskrr verkerarlk
      781 tvkfnakpgv idakgsfndk rkknfifsrk fpfykskehs eqetsdpeqh vssnasdses
      841 syrgqedcil syepvtrqei nytrpviilg pmkdrinddl isefpdkfgs cvphttrpkr
      901 dyevdgrdyh fvisreqmek diqehkfiea gqyndnlygt svqsvrfvae rgkhcildvs
      961 gnaikrlqva qlypiaifik pksweplmem nkrlteeqak ktydraikle qefgeyftai
     1021 vqgdslediy nqcklvieeq sgpfiwipsk ekl
//
LOCUS       XP_053927915            1040 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053927915
VERSION     XP_053927915.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071940.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1040
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1040
                     /product="disks large homolog 2 isoform X3"
                     /calculated_mol_wt=116912
     Region          7..64
                     /region_name="L27_1"
                     /note="pfam09058"
                     /db_xref="CDD:462665"
     Region          184..266
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          265..353
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(276..282,299,302,332,336,339..340)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          362..446
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(371..377,394,397,427,431,434..435)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          447..515
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          588..678
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(600..606,617,620,650,654,657..658)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          704..777
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(712,734..735)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(715,717,720,729,747..748,767,769..770)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          849..1027
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..1040
                     /gene="DLG2"
                     /coded_by="XM_054071940.1:1520..4642"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mpvkkkdtdr almlleeyck klrkpeeqql kkairkvmgi fksslfqall diqefyevtl
       61 lnsqksyeqk ieeanqvaek wekttsatdh enlqknqesa asngskgseq fgednkenqt
      121 fenyvvdmkt kqshgrcpsh kcsvetpawm piqhstkgqe eenptgrglq lgpfpemewt
      181 ntqkyryqde daphdhtlpr lthevrgpel vhvseknlsq ienvhgyvlq shisplkasp
      241 apiivntdtl dtipyvngte ieyefeeitl ergnsglgfs iaggtdnphi gddpgifitk
      301 iipggaaaed grlrvndcil rvnevdvsev shskavealk eagsivrlyv rrrrpiletv
      361 veiklfkgpk glgfsiaggv gnqhipgdns iyvtkiidgg aaqkdgrlqv gdrllmvnny
      421 sleevtheea vailkntsdv vylkvgkptt iymtdpygpp dithsysppm enhilssgnn
      481 gtleykasla pispgryspi pkhmlveddy trppepvyst vnklcdkpps prhyspvecd
      541 ksflltapyp hyhvgllpds eitshsqhst atrpptvslq rtisvegepr kiilhkgstg
      601 lgfnivgged gegifvsfil aggpadlsge lqrgdqilsv ngidlrgath eqaaaalkga
      661 gqtvtiiaqy qpeeyarfea kihdlreqmm nhsmssgsgs lrtnqkrsly vramfdydks
      721 kdsglpsqgl sfkygdilhv inasddewwq arrvtlegds eemgvipskr rverkerarl
      781 ktvkfnakpg vidakgsfnd krkknfifsr kfpfykskeh seqetsdper gqedcilsye
      841 pvtrqeinyt rpviilgpmk drinddlise fpdkfgscvp httrpkrdye vdgrdyhfvi
      901 sreqmekdiq ehkfieagqy ndnlygtsvq svrfvaergk hcildvsgna ikrlqvaqly
      961 piaifikpks weplmemnkr lteeqakkty draikleqef geyftaivqg dslediynqc
     1021 klvieeqsgp fiwipskekl
//
LOCUS       XP_053927924            1036 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053927924
VERSION     XP_053927924.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071949.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1036
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1036
                     /product="disks large homolog 2 isoform X4"
                     /calculated_mol_wt=115831
     Region          7..64
                     /region_name="L27_1"
                     /note="pfam09058"
                     /db_xref="CDD:462665"
     Region          184..266
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          265..353
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(276..282,299,302,332,336,339..340)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          362..446
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(371..377,394,397,427,431,434..435)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          447..515
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          588..678
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(600..606,617,620,650,654,657..658)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          704..777
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(712,734..735)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(715,717,720,729,747..748,767,769..770)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          845..1023
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..1036
                     /gene="DLG2"
                     /coded_by="XM_054071949.1:1520..4630"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mpvkkkdtdr almlleeyck klrkpeeqql kkairkvmgi fksslfqall diqefyevtl
       61 lnsqksyeqk ieeanqvaek wekttsatdh enlqknqesa asngskgseq fgednkenqt
      121 fenyvvdmkt kqshgrcpsh kcsvetpawm piqhstkgqe eenptgrglq lgpfpemewt
      181 ntqkyryqde daphdhtlpr lthevrgpel vhvseknlsq ienvhgyvlq shisplkasp
      241 apiivntdtl dtipyvngte ieyefeeitl ergnsglgfs iaggtdnphi gddpgifitk
      301 iipggaaaed grlrvndcil rvnevdvsev shskavealk eagsivrlyv rrrrpiletv
      361 veiklfkgpk glgfsiaggv gnqhipgdns iyvtkiidgg aaqkdgrlqv gdrllmvnny
      421 sleevtheea vailkntsdv vylkvgkptt iymtdpygpp dithsysppm enhilssgnn
      481 gtleykasla pispgryspi pkhmlveddy trppepvyst vnklcdkpps prhyspvecd
      541 ksflltapyp hyhvgllpds eitshsqhst atrpptvslq rtisvegepr kiilhkgstg
      601 lgfnivgged gegifvsfil aggpadlsge lqrgdqilsv ngidlrgath eqaaaalkga
      661 gqtvtiiaqy qpeeyarfea kihdlreqmm nhsmssgsgs lrtnqkrsly vramfdydks
      721 kdsglpsqgl sfkygdilhv inasddewwq arrvtlegds eemgvipskr rverkerarl
      781 ktvkfnakpg vidakgdipg lgddgygtkt lkhvssnasd sessyrgqed cilsyepvtr
      841 qeinytrpvi ilgpmkdrin ddlisefpdk fgscvphttr pkrdyevdgr dyhfvisreq
      901 mekdiqehkf ieagqyndnl ygtsvqsvrf vaergkhcil dvsgnaikrl qvaqlypiai
      961 fikpkswepl memnkrltee qakktydrai kleqefgeyf taivqgdsle diynqcklvi
     1021 eeqsgpfiwi pskekl
//
LOCUS       XP_053927932            1029 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X5 [Cuculus canorus].
ACCESSION   XP_053927932
VERSION     XP_053927932.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071957.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1029
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1029
                     /product="disks large homolog 2 isoform X5"
                     /calculated_mol_wt=115605
     Region          7..64
                     /region_name="L27_1"
                     /note="pfam09058"
                     /db_xref="CDD:462665"
     Region          159..241
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          240..328
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(251..257,274,277,307,311,314..315)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          337..421
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(346..352,369,372,402,406,409..410)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          422..490
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          563..653
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(575..581,592,595,625,629,632..633)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          679..752
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(687,709..710)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(690,692,695,704,722..723,742,744..745)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          838..1016
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..1029
                     /gene="DLG2"
                     /coded_by="XM_054071957.1:1520..4609"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mpvkkkdtdr almlleeyck klrkpeeqql kkairkvmgi fksslfqall diqefyevtl
       61 lnsqksyeqk ieeanqvaek wekttsatdh enlqknqesa asngskgseq fgednkenqt
      121 fenyvvdmkt kkgqeeenpt grglqlgpfp emewtntqky ryqdedaphd htlprlthev
      181 rgpelvhvse knlsqienvh gyvlqshisp lkaspapiiv ntdtldtipy vngteieyef
      241 eeitlergns glgfsiaggt dnphigddpg ifitkiipgg aaaedgrlrv ndcilrvnev
      301 dvsevshska vealkeagsi vrlyvrrrrp iletvveikl fkgpkglgfs iaggvgnqhi
      361 pgdnsiyvtk iidggaaqkd grlqvgdrll mvnnysleev theeavailk ntsdvvylkv
      421 gkpttiymtd pygppdiths ysppmenhil ssgnngtley kaslapispg ryspipkhml
      481 veddytrppe pvystvnklc dkppsprhys pvecdksfll tapyphyhvg llpdseitsh
      541 sqhstatrpp tvslqrtisv egeprkiilh kgstglgfni vggedgegif vsfilaggpa
      601 dlsgelqrgd qilsvngidl rgatheqaaa alkgagqtvt iiaqyqpeey arfeakihdl
      661 reqmmnhsms sgsgslrtnq krslyvramf dydkskdsgl psqglsfkyg dilhvinasd
      721 dewwqarrvt legdseemgv ipskrrverk erarlktvkf nakpgvidak gsfndkrkkn
      781 fifsrkfpfy kskehseqet sdpeqhvssn asdsessyrg qedcilsyep vtrqeinytr
      841 pviilgpmkd rinddlisef pdkfgscvph ttrpkrdyev dgrdyhfvis reqmekdiqe
      901 hkfieagqyn dnlygtsvqs vrfvaergkh cildvsgnai krlqvaqlyp iaifikpksw
      961 eplmemnkrl teeqakktyd raikleqefg eyftaivqgd slediynqck lvieeqsgpf
     1021 iwipskekl
//
LOCUS       XP_053927943            1027 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X6 [Cuculus canorus].
ACCESSION   XP_053927943
VERSION     XP_053927943.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071968.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1027
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1027
                     /product="disks large homolog 2 isoform X6"
                     /calculated_mol_wt=115335
     Region          7..64
                     /region_name="L27_1"
                     /note="pfam09058"
                     /db_xref="CDD:462665"
     Region          157..239
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          238..326
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(249..255,272,275,305,309,312..313)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          335..419
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(344..350,367,370,400,404,407..408)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          420..488
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          561..651
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(573..579,590,593,623,627,630..631)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          677..750
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(685,707..708)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(688,690,693,702,720..721,740,742..743)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          836..1014
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..1027
                     /gene="DLG2"
                     /coded_by="XM_054071968.1:1520..4603"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mpvkkkdtdr almlleeyck klrkpeeqql kkairkvmgi fksslfqall diqefyevtl
       61 lnsqksyeqk ieeanqvaek wekttsatdh enlqknqesa asngskgseq fgednkenqt
      121 fenyvvdmkt kqshgrcpsh kcsvetpawm piqhstkyry qdedaphdht lprlthevrg
      181 pelvhvsekn lsqienvhgy vlqshisplk aspapiivnt dtldtipyvn gteieyefee
      241 itlergnsgl gfsiaggtdn phigddpgif itkiipggaa aedgrlrvnd cilrvnevdv
      301 sevshskave alkeagsivr lyvrrrrpil etvveiklfk gpkglgfsia ggvgnqhipg
      361 dnsiyvtkii dggaaqkdgr lqvgdrllmv nnysleevth eeavailknt sdvvylkvgk
      421 pttiymtdpy gppdithsys ppmenhilss gnngtleyka slapispgry spipkhmlve
      481 ddytrppepv ystvnklcdk ppsprhyspv ecdksfllta pyphyhvgll pdseitshsq
      541 hstatrpptv slqrtisveg eprkiilhkg stglgfnivg gedgegifvs filaggpadl
      601 sgelqrgdqi lsvngidlrg atheqaaaal kgagqtvtii aqyqpeeyar feakihdlre
      661 qmmnhsmssg sgslrtnqkr slyvramfdy dkskdsglps qglsfkygdi lhvinasdde
      721 wwqarrvtle gdseemgvip skrrverker arlktvkfna kpgvidakgs fndkrkknfi
      781 fsrkfpfyks kehseqetsd peqhvssnas dsessyrgqe dcilsyepvt rqeinytrpv
      841 iilgpmkdri nddlisefpd kfgscvphtt rpkrdyevdg rdyhfvisre qmekdiqehk
      901 fieagqyndn lygtsvqsvr fvaergkhci ldvsgnaikr lqvaqlypia ifikpkswep
      961 lmemnkrlte eqakktydra ikleqefgey ftaivqgdsl ediynqcklv ieeqsgpfiw
     1021 ipskekl
//
LOCUS       XP_053927950            1026 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X7 [Cuculus canorus].
ACCESSION   XP_053927950
VERSION     XP_053927950.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071975.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1026
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1026
                     /product="disks large homolog 2 isoform X7"
                     /calculated_mol_wt=115207
     Region          7..64
                     /region_name="L27_1"
                     /note="pfam09058"
                     /db_xref="CDD:462665"
     Region          156..238
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          237..325
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(248..254,271,274,304,308,311..312)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          334..418
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(343..349,366,369,399,403,406..407)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          419..487
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          560..650
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(572..578,589,592,622,626,629..630)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          676..749
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(684,706..707)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(687,689,692,701,719..720,739,741..742)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          835..1013
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..1026
                     /gene="DLG2"
                     /coded_by="XM_054071975.1:1520..4600"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mpvkkkdtdr almlleeyck klrkpeeqql kkairkvmgi fksslfqall diqefyevtl
       61 lnsqksyeqk ieeanqvaek wekttsatdh enlqknqesa asngskgseq fgednkenqt
      121 fenyvvdmkt kshgrcpshk csvetpawmp iqhstkyryq dedaphdhtl prlthevrgp
      181 elvhvseknl sqienvhgyv lqshisplka spapiivntd tldtipyvng teieyefeei
      241 tlergnsglg fsiaggtdnp higddpgifi tkiipggaaa edgrlrvndc ilrvnevdvs
      301 evshskavea lkeagsivrl yvrrrrpile tvveiklfkg pkglgfsiag gvgnqhipgd
      361 nsiyvtkiid ggaaqkdgrl qvgdrllmvn nysleevthe eavailknts dvvylkvgkp
      421 ttiymtdpyg ppdithsysp pmenhilssg nngtleykas lapispgrys pipkhmlved
      481 dytrppepvy stvnklcdkp psprhyspve cdksflltap yphyhvgllp dseitshsqh
      541 statrpptvs lqrtisvege prkiilhkgs tglgfnivgg edgegifvsf ilaggpadls
      601 gelqrgdqil svngidlrga theqaaaalk gagqtvtiia qyqpeeyarf eakihdlreq
      661 mmnhsmssgs gslrtnqkrs lyvramfdyd kskdsglpsq glsfkygdil hvinasddew
      721 wqarrvtleg dseemgvips krrverkera rlktvkfnak pgvidakgsf ndkrkknfif
      781 srkfpfyksk ehseqetsdp eqhvssnasd sessyrgqed cilsyepvtr qeinytrpvi
      841 ilgpmkdrin ddlisefpdk fgscvphttr pkrdyevdgr dyhfvisreq mekdiqehkf
      901 ieagqyndnl ygtsvqsvrf vaergkhcil dvsgnaikrl qvaqlypiai fikpkswepl
      961 memnkrltee qakktydrai kleqefgeyf taivqgdsle diynqcklvi eeqsgpfiwi
     1021 pskekl
//
LOCUS       XP_053927955            1022 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X8 [Cuculus canorus].
ACCESSION   XP_053927955
VERSION     XP_053927955.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071980.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1022
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1022
                     /product="disks large homolog 2 isoform X8"
                     /calculated_mol_wt=114351
     Region          7..64
                     /region_name="L27_1"
                     /note="pfam09058"
                     /db_xref="CDD:462665"
     Region          184..266
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          265..353
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(276..282,299,302,332,336,339..340)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          362..446
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(371..377,394,397,427,431,434..435)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          447..515
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          588..678
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(600..606,617,620,650,654,657..658)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          704..777
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(712,734..735)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(715,717,720,729,747..748,767,769..770)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          831..1009
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..1022
                     /gene="DLG2"
                     /coded_by="XM_054071980.1:1519..4587"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mpvkkkdtdr almlleeyck klrkpeeqql kkairkvmgi fksslfqall diqefyevtl
       61 lnsqksyeqk ieeanqvaek wekttsatdh enlqknqesa asngskgseq fgednkenqt
      121 fenyvvdmkt kqshgrcpsh kcsvetpawm piqhstkgqe eenptgrglq lgpfpemewt
      181 ntqkyryqde daphdhtlpr lthevrgpel vhvseknlsq ienvhgyvlq shisplkasp
      241 apiivntdtl dtipyvngte ieyefeeitl ergnsglgfs iaggtdnphi gddpgifitk
      301 iipggaaaed grlrvndcil rvnevdvsev shskavealk eagsivrlyv rrrrpiletv
      361 veiklfkgpk glgfsiaggv gnqhipgdns iyvtkiidgg aaqkdgrlqv gdrllmvnny
      421 sleevtheea vailkntsdv vylkvgkptt iymtdpygpp dithsysppm enhilssgnn
      481 gtleykasla pispgryspi pkhmlveddy trppepvyst vnklcdkpps prhyspvecd
      541 ksflltapyp hyhvgllpds eitshsqhst atrpptvslq rtisvegepr kiilhkgstg
      601 lgfnivgged gegifvsfil aggpadlsge lqrgdqilsv ngidlrgath eqaaaalkga
      661 gqtvtiiaqy qpeeyarfea kihdlreqmm nhsmssgsgs lrtnqkrsly vramfdydks
      721 kdsglpsqgl sfkygdilhv inasddewwq arrvtlegds eemgvipskr rverkerarl
      781 ktvkfnakpg vidakgdipg lgddgygtkt lrgqedcils yepvtrqein ytrpviilgp
      841 mkdrinddli sefpdkfgsc vphttrpkrd yevdgrdyhf visreqmekd iqehkfieag
      901 qyndnlygts vqsvrfvaer gkhcildvsg naikrlqvaq lypiaifikp ksweplmemn
      961 krlteeqakk tydraikleq efgeyftaiv qgdslediyn qcklvieeqs gpfiwipske
     1021 kl
//
LOCUS       XP_053927963            1013 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X9 [Cuculus canorus].
ACCESSION   XP_053927963
VERSION     XP_053927963.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071988.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1013
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1013
                     /product="disks large homolog 2 isoform X9"
                     /calculated_mol_wt=113856
     Region          7..64
                     /region_name="L27_1"
                     /note="pfam09058"
                     /db_xref="CDD:462665"
     Region          157..239
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          238..326
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(249..255,272,275,305,309,312..313)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          335..419
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(344..350,367,370,400,404,407..408)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          420..488
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          561..651
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(573..579,590,593,623,627,630..631)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          677..750
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(685,707..708)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(688,690,693,702,720..721,740,742..743)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          822..1000
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..1013
                     /gene="DLG2"
                     /coded_by="XM_054071988.1:1520..4561"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mpvkkkdtdr almlleeyck klrkpeeqql kkairkvmgi fksslfqall diqefyevtl
       61 lnsqksyeqk ieeanqvaek wekttsatdh enlqknqesa asngskgseq fgednkenqt
      121 fenyvvdmkt kqshgrcpsh kcsvetpawm piqhstkyry qdedaphdht lprlthevrg
      181 pelvhvsekn lsqienvhgy vlqshisplk aspapiivnt dtldtipyvn gteieyefee
      241 itlergnsgl gfsiaggtdn phigddpgif itkiipggaa aedgrlrvnd cilrvnevdv
      301 sevshskave alkeagsivr lyvrrrrpil etvveiklfk gpkglgfsia ggvgnqhipg
      361 dnsiyvtkii dggaaqkdgr lqvgdrllmv nnysleevth eeavailknt sdvvylkvgk
      421 pttiymtdpy gppdithsys ppmenhilss gnngtleyka slapispgry spipkhmlve
      481 ddytrppepv ystvnklcdk ppsprhyspv ecdksfllta pyphyhvgll pdseitshsq
      541 hstatrpptv slqrtisveg eprkiilhkg stglgfnivg gedgegifvs filaggpadl
      601 sgelqrgdqi lsvngidlrg atheqaaaal kgagqtvtii aqyqpeeyar feakihdlre
      661 qmmnhsmssg sgslrtnqkr slyvramfdy dkskdsglps qglsfkygdi lhvinasdde
      721 wwqarrvtle gdseemgvip skrrverker arlktvkfna kpgvidakgs fndkrkknfi
      781 fsrkfpfyks kehseqetsd pergqedcil syepvtrqei nytrpviilg pmkdrinddl
      841 isefpdkfgs cvphttrpkr dyevdgrdyh fvisreqmek diqehkfiea gqyndnlygt
      901 svqsvrfvae rgkhcildvs gnaikrlqva qlypiaifik pksweplmem nkrlteeqak
      961 ktydraikle qefgeyftai vqgdslediy nqcklvieeq sgpfiwipsk ekl
//
LOCUS       XP_053927967            1002 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X10 [Cuculus canorus].
ACCESSION   XP_053927967
VERSION     XP_053927967.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054071992.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1002
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1002
                     /product="disks large homolog 2 isoform X10"
                     /calculated_mol_wt=112548
     Region          7..64
                     /region_name="L27_1"
                     /note="pfam09058"
                     /db_xref="CDD:462665"
     Region          132..214
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          213..301
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(224..230,247,250,280,284,287..288)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          310..394
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(319..325,342,345,375,379,382..383)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          395..463
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          536..626
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(548..554,565,568,598,602,605..606)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          652..725
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(660,682..683)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(663,665,668,677,695..696,715,717..718)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          811..989
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..1002
                     /gene="DLG2"
                     /coded_by="XM_054071992.1:1520..4528"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mpvkkkdtdr almlleeyck klrkpeeqql kkairkvmgi fksslfqall diqefyevtl
       61 lnsqksyeqk ieeanqvaek wekttsatdh enlqknqesa asngskgseq fgednkenqt
      121 fenyvvdmkt kkyryqdeda phdhtlprlt hevrgpelvh vseknlsqie nvhgyvlqsh
      181 isplkaspap iivntdtldt ipyvngteie yefeeitler gnsglgfsia ggtdnphigd
      241 dpgifitkii pggaaaedgr lrvndcilrv nevdvsevsh skavealkea gsivrlyvrr
      301 rrpiletvve iklfkgpkgl gfsiaggvgn qhipgdnsiy vtkiidggaa qkdgrlqvgd
      361 rllmvnnysl eevtheeava ilkntsdvvy lkvgkpttiy mtdpygppdi thsysppmen
      421 hilssgnngt leykaslapi spgryspipk hmlveddytr ppepvystvn klcdkppspr
      481 hyspvecdks flltapyphy hvgllpdsei tshsqhstat rpptvslqrt isvegeprki
      541 ilhkgstglg fnivggedge gifvsfilag gpadlsgelq rgdqilsvng idlrgatheq
      601 aaaalkgagq tvtiiaqyqp eeyarfeaki hdlreqmmnh smssgsgslr tnqkrslyvr
      661 amfdydkskd sglpsqglsf kygdilhvin asddewwqar rvtlegdsee mgvipskrrv
      721 erkerarlkt vkfnakpgvi dakgsfndkr kknfifsrkf pfykskehse qetsdpeqhv
      781 ssnasdsess yrgqedcils yepvtrqein ytrpviilgp mkdrinddli sefpdkfgsc
      841 vphttrpkrd yevdgrdyhf visreqmekd iqehkfieag qyndnlygts vqsvrfvaer
      901 gkhcildvsg naikrlqvaq lypiaifikp ksweplmemn krlteeqakk tydraikleq
      961 efgeyftaiv qgdslediyn qcklvieeqs gpfiwipske kl
//
LOCUS       XP_053927976            1002 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X11 [Cuculus canorus].
ACCESSION   XP_053927976
VERSION     XP_053927976.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072001.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1002
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1002
                     /product="disks large homolog 2 isoform X11"
                     /calculated_mol_wt=112517
     Region          7..64
                     /region_name="L27_1"
                     /note="pfam09058"
                     /db_xref="CDD:462665"
     Region          184..266
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          265..353
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(276..282,299,302,332,336,339..340)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          362..446
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(371..377,394,397,427,431,434..435)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          447..523
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          536..626
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(548..554,565,568,598,602,605..606)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          652..725
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(660,682..683)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(663,665,668,677,695..696,715,717..718)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          811..989
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..1002
                     /gene="DLG2"
                     /coded_by="XM_054072001.1:1523..4531"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mpvkkkdtdr almlleeyck klrkpeeqql kkairkvmgi fksslfqall diqefyevtl
       61 lnsqksyeqk ieeanqvaek wekttsatdh enlqknqesa asngskgseq fgednkenqt
      121 fenyvvdmkt kqshgrcpsh kcsvetpawm piqhstkgqe eenptgrglq lgpfpemewt
      181 ntqkyryqde daphdhtlpr lthevrgpel vhvseknlsq ienvhgyvlq shisplkasp
      241 apiivntdtl dtipyvngte ieyefeeitl ergnsglgfs iaggtdnphi gddpgifitk
      301 iipggaaaed grlrvndcil rvnevdvsev shskavealk eagsivrlyv rrrrpiletv
      361 veiklfkgpk glgfsiaggv gnqhipgdns iyvtkiidgg aaqkdgrlqv gdrllmvnny
      421 sleevtheea vailkntsdv vylkvgkptt iymtdpygpp dithsysppm enhilssgnn
      481 gtleykasla pispgryspi pkhmlveddy tshsqhstat rpptvslqrt isvegeprki
      541 ilhkgstglg fnivggedge gifvsfilag gpadlsgelq rgdqilsvng idlrgatheq
      601 aaaalkgagq tvtiiaqyqp eeyarfeaki hdlreqmmnh smssgsgslr tnqkrslyvr
      661 amfdydkskd sglpsqglsf kygdilhvin asddewwqar rvtlegdsee mgvipskrrv
      721 erkerarlkt vkfnakpgvi dakgsfndkr kknfifsrkf pfykskehse qetsdpeqhv
      781 ssnasdsess yrgqedcils yepvtrqein ytrpviilgp mkdrinddli sefpdkfgsc
      841 vphttrpkrd yevdgrdyhf visreqmekd iqehkfieag qyndnlygts vqsvrfvaer
      901 gkhcildvsg naikrlqvaq lypiaifikp ksweplmemn krlteeqakk tydraikleq
      961 efgeyftaiv qgdslediyn qcklvieeqs gpfiwipske kl
//
LOCUS       XP_053927981             970 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X12 [Cuculus canorus].
ACCESSION   XP_053927981
VERSION     XP_053927981.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072006.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..970
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..970
                     /product="disks large homolog 2 isoform X12"
                     /calculated_mol_wt=108477
     Region          7..64
                     /region_name="L27_1"
                     /note="pfam09058"
                     /db_xref="CDD:462665"
     Region          184..266
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          265..353
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(276..282,299,302,332,336,339..340)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          362..446
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(371..377,394,397,427,431,434..435)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          447..523
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          536..626
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(548..554,565,568,598,602,605..606)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          652..725
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(660,682..683)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(663,665,668,677,695..696,715,717..718)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          779..957
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..970
                     /gene="DLG2"
                     /coded_by="XM_054072006.1:1521..4433"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mpvkkkdtdr almlleeyck klrkpeeqql kkairkvmgi fksslfqall diqefyevtl
       61 lnsqksyeqk ieeanqvaek wekttsatdh enlqknqesa asngskgseq fgednkenqt
      121 fenyvvdmkt kqshgrcpsh kcsvetpawm piqhstkgqe eenptgrglq lgpfpemewt
      181 ntqkyryqde daphdhtlpr lthevrgpel vhvseknlsq ienvhgyvlq shisplkasp
      241 apiivntdtl dtipyvngte ieyefeeitl ergnsglgfs iaggtdnphi gddpgifitk
      301 iipggaaaed grlrvndcil rvnevdvsev shskavealk eagsivrlyv rrrrpiletv
      361 veiklfkgpk glgfsiaggv gnqhipgdns iyvtkiidgg aaqkdgrlqv gdrllmvnny
      421 sleevtheea vailkntsdv vylkvgkptt iymtdpygpp dithsysppm enhilssgnn
      481 gtleykasla pispgryspi pkhmlveddy tshsqhstat rpptvslqrt isvegeprki
      541 ilhkgstglg fnivggedge gifvsfilag gpadlsgelq rgdqilsvng idlrgatheq
      601 aaaalkgagq tvtiiaqyqp eeyarfeaki hdlreqmmnh smssgsgslr tnqkrslyvr
      661 amfdydkskd sglpsqglsf kygdilhvin asddewwqar rvtlegdsee mgvipskrrv
      721 erkerarlkt vkfnakpgvi dakgdipglg ddgygtktlr gqedcilsye pvtrqeinyt
      781 rpviilgpmk drinddlise fpdkfgscvp httrpkrdye vdgrdyhfvi sreqmekdiq
      841 ehkfieagqy ndnlygtsvq svrfvaergk hcildvsgna ikrlqvaqly piaifikpks
      901 weplmemnkr lteeqakkty draikleqef geyftaivqg dslediynqc klvieeqsgp
      961 fiwipskekl
//
LOCUS       XP_053927989             938 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X13 [Cuculus canorus].
ACCESSION   XP_053927989
VERSION     XP_053927989.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072014.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..938
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..938
                     /product="disks large homolog 2 isoform X13"
                     /calculated_mol_wt=104946
     Region          68..150
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          149..237
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(160..166,183,186,216,220,223..224)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          246..330
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(255..261,278,281,311,315,318..319)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          331..399
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          472..562
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(484..490,501,504,534,538,541..542)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          588..661
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(596,618..619)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(599,601,604,613,631..632,651,653..654)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          747..925
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..938
                     /gene="DLG2"
                     /coded_by="XM_054072014.1:706..3522"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mlgivcvpfv qsrdaeywsi cslftamffa cycalrtnvk kgqeeenptg rglqlgpfpe
       61 mewtntqkyr yqdedaphdh tlprlthevr gpelvhvsek nlsqienvhg yvlqshispl
      121 kaspapiivn tdtldtipyv ngteieyefe eitlergnsg lgfsiaggtd nphigddpgi
      181 fitkiipgga aaedgrlrvn dcilrvnevd vsevshskav ealkeagsiv rlyvrrrrpi
      241 letvveiklf kgpkglgfsi aggvgnqhip gdnsiyvtki idggaaqkdg rlqvgdrllm
      301 vnnysleevt heeavailkn tsdvvylkvg kpttiymtdp ygppdithsy sppmenhils
      361 sgnngtleyk aslapispgr yspipkhmlv eddytrppep vystvnklcd kppsprhysp
      421 vecdksfllt apyphyhvgl lpdseitshs qhstatrppt vslqrtisve geprkiilhk
      481 gstglgfniv ggedgegifv sfilaggpad lsgelqrgdq ilsvngidlr gatheqaaaa
      541 lkgagqtvti iaqyqpeeya rfeakihdlr eqmmnhsmss gsgslrtnqk rslyvramfd
      601 ydkskdsglp sqglsfkygd ilhvinasdd ewwqarrvtl egdseemgvi pskrrverke
      661 rarlktvkfn akpgvidakg sfndkrkknf ifsrkfpfyk skehseqets dpeqhvssna
      721 sdsessyrgq edcilsyepv trqeinytrp viilgpmkdr inddlisefp dkfgscvpht
      781 trpkrdyevd grdyhfvisr eqmekdiqeh kfieagqynd nlygtsvqsv rfvaergkhc
      841 ildvsgnaik rlqvaqlypi aifikpkswe plmemnkrlt eeqakktydr aikleqefge
      901 yftaivqgds lediynqckl vieeqsgpfi wipskekl
//
LOCUS       XP_053927995             933 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X14 [Cuculus canorus].
ACCESSION   XP_053927995
VERSION     XP_053927995.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072020.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..933
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..933
                     /product="disks large homolog 2 isoform X14"
                     /calculated_mol_wt=104274
     Region          63..145
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          144..232
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(155..161,178,181,211,215,218..219)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          241..325
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(250..256,273,276,306,310,313..314)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          326..394
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          467..557
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(479..485,496,499,529,533,536..537)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          583..656
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(591,613..614)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(594,596,599,608,626..627,646,648..649)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          742..920
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..933
                     /gene="DLG2"
                     /coded_by="XM_054072020.1:480..3281"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mdclcivttk qshgrcpshk csvetpawmp iqhstkgqee enptgrglql gpfpemewtn
       61 tqkyryqded aphdhtlprl thevrgpelv hvseknlsqi envhgyvlqs hisplkaspa
      121 piivntdtld tipyvngtei eyefeeitle rgnsglgfsi aggtdnphig ddpgifitki
      181 ipggaaaedg rlrvndcilr vnevdvsevs hskavealke agsivrlyvr rrrpiletvv
      241 eiklfkgpkg lgfsiaggvg nqhipgdnsi yvtkiidgga aqkdgrlqvg drllmvnnys
      301 leevtheeav ailkntsdvv ylkvgkptti ymtdpygppd ithsysppme nhilssgnng
      361 tleykaslap ispgryspip khmlveddyt rppepvystv nklcdkppsp rhyspvecdk
      421 sflltapyph yhvgllpdse itshsqhsta trpptvslqr tisvegeprk iilhkgstgl
      481 gfnivggedg egifvsfila ggpadlsgel qrgdqilsvn gidlrgathe qaaaalkgag
      541 qtvtiiaqyq peeyarfeak ihdlreqmmn hsmssgsgsl rtnqkrslyv ramfdydksk
      601 dsglpsqgls fkygdilhvi nasddewwqa rrvtlegdse emgvipskrr verkerarlk
      661 tvkfnakpgv idakgsfndk rkknfifsrk fpfykskehs eqetsdpeqh vssnasdses
      721 syrgqedcil syepvtrqei nytrpviilg pmkdrinddl isefpdkfgs cvphttrpkr
      781 dyevdgrdyh fvisreqmek diqehkfiea gqyndnlygt svqsvrfvae rgkhcildvs
      841 gnaikrlqva qlypiaifik pksweplmem nkrlteeqak ktydraikle qefgeyftai
      901 vqgdslediy nqcklvieeq sgpfiwipsk ekl
//
LOCUS       XP_053928002             932 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X15 [Cuculus canorus].
ACCESSION   XP_053928002
VERSION     XP_053928002.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072027.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..932
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..932
                     /product="disks large homolog 2 isoform X15"
                     /calculated_mol_wt=104153
     Region          62..144
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          143..231
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(154..160,177,180,210,214,217..218)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          240..324
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(249..255,272,275,305,309,312..313)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          325..393
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          466..556
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(478..484,495,498,528,532,535..536)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          582..655
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(590,612..613)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(593,595,598,607,625..626,645,647..648)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          741..919
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..932
                     /gene="DLG2"
                     /coded_by="XM_054072027.1:954..3752"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mcpivrnpdc ftpmichckv actnntlslm fgckkgqeee nptgrglqlg pfpemewtnt
       61 qkyryqdeda phdhtlprlt hevrgpelvh vseknlsqie nvhgyvlqsh isplkaspap
      121 iivntdtldt ipyvngteie yefeeitler gnsglgfsia ggtdnphigd dpgifitkii
      181 pggaaaedgr lrvndcilrv nevdvsevsh skavealkea gsivrlyvrr rrpiletvve
      241 iklfkgpkgl gfsiaggvgn qhipgdnsiy vtkiidggaa qkdgrlqvgd rllmvnnysl
      301 eevtheeava ilkntsdvvy lkvgkpttiy mtdpygppdi thsysppmen hilssgnngt
      361 leykaslapi spgryspipk hmlveddytr ppepvystvn klcdkppspr hyspvecdks
      421 flltapyphy hvgllpdsei tshsqhstat rpptvslqrt isvegeprki ilhkgstglg
      481 fnivggedge gifvsfilag gpadlsgelq rgdqilsvng idlrgatheq aaaalkgagq
      541 tvtiiaqyqp eeyarfeaki hdlreqmmnh smssgsgslr tnqkrslyvr amfdydkskd
      601 sglpsqglsf kygdilhvin asddewwqar rvtlegdsee mgvipskrrv erkerarlkt
      661 vkfnakpgvi dakgsfndkr kknfifsrkf pfykskehse qetsdpeqhv ssnasdsess
      721 yrgqedcils yepvtrqein ytrpviilgp mkdrinddli sefpdkfgsc vphttrpkrd
      781 yevdgrdyhf visreqmekd iqehkfieag qyndnlygts vqsvrfvaer gkhcildvsg
      841 naikrlqvaq lypiaifikp ksweplmemn krlteeqakk tydraikleq efgeyftaiv
      901 qgdslediyn qcklvieeqs gpfiwipske kl
//
LOCUS       XP_053928011             932 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X16 [Cuculus canorus].
ACCESSION   XP_053928011
VERSION     XP_053928011.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072036.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..932
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..932
                     /product="disks large homolog 2 isoform X16"
                     /calculated_mol_wt=104146
     Region          62..144
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          143..231
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(154..160,177,180,210,214,217..218)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          240..324
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(249..255,272,275,305,309,312..313)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          325..393
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          466..556
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(478..484,495,498,528,532,535..536)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          582..655
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(590,612..613)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(593,595,598,607,625..626,645,647..648)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          741..919
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..932
                     /gene="DLG2"
                     /coded_by="XM_054072036.1:480..3278"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mdclcivttk shgrcpshkc svetpawmpi qhstkgqeee nptgrglqlg pfpemewtnt
       61 qkyryqdeda phdhtlprlt hevrgpelvh vseknlsqie nvhgyvlqsh isplkaspap
      121 iivntdtldt ipyvngteie yefeeitler gnsglgfsia ggtdnphigd dpgifitkii
      181 pggaaaedgr lrvndcilrv nevdvsevsh skavealkea gsivrlyvrr rrpiletvve
      241 iklfkgpkgl gfsiaggvgn qhipgdnsiy vtkiidggaa qkdgrlqvgd rllmvnnysl
      301 eevtheeava ilkntsdvvy lkvgkpttiy mtdpygppdi thsysppmen hilssgnngt
      361 leykaslapi spgryspipk hmlveddytr ppepvystvn klcdkppspr hyspvecdks
      421 flltapyphy hvgllpdsei tshsqhstat rpptvslqrt isvegeprki ilhkgstglg
      481 fnivggedge gifvsfilag gpadlsgelq rgdqilsvng idlrgatheq aaaalkgagq
      541 tvtiiaqyqp eeyarfeaki hdlreqmmnh smssgsgslr tnqkrslyvr amfdydkskd
      601 sglpsqglsf kygdilhvin asddewwqar rvtlegdsee mgvipskrrv erkerarlkt
      661 vkfnakpgvi dakgsfndkr kknfifsrkf pfykskehse qetsdpeqhv ssnasdsess
      721 yrgqedcils yepvtrqein ytrpviilgp mkdrinddli sefpdkfgsc vphttrpkrd
      781 yevdgrdyhf visreqmekd iqehkfieag qyndnlygts vqsvrfvaer gkhcildvsg
      841 naikrlqvaq lypiaifikp ksweplmemn krlteeqakk tydraikleq efgeyftaiv
      901 qgdslediyn qcklvieeqs gpfiwipske kl
//
LOCUS       XP_053928018             926 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X17 [Cuculus canorus].
ACCESSION   XP_053928018
VERSION     XP_053928018.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072043.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..926
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..926
                     /product="disks large homolog 2 isoform X17"
                     /calculated_mol_wt=102927
     Region          49..138
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          137..225
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(148..154,171,174,204,208,211..212)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          234..318
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(243..249,266,269,299,303,306..307)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          319..387
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          460..550
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(472..478,489,492,522,526,529..530)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          576..649
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(584,606..607)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(587,589,592,601,619..620,639,641..642)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          735..913
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..926
                     /gene="DLG2"
                     /coded_by="XM_054072043.1:98..2878"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mhahlpkqhs cgrgseglda grslppiard ardvhcacrw hqhppglqys sqalpswgpg
       61 aasqnrskfv plwdtvqksp hrspakaqgn pgewwsecac ahgwsppvqa spapiivntd
      121 tldtipyvng teieyefeei tlergnsglg fsiaggtdnp higddpgifi tkiipggaaa
      181 edgrlrvndc ilrvnevdvs evshskavea lkeagsivrl yvrrrrpile tvveiklfkg
      241 pkglgfsiag gvgnqhipgd nsiyvtkiid ggaaqkdgrl qvgdrllmvn nysleevthe
      301 eavailknts dvvylkvgkp ttiymtdpyg ppdithsysp pmenhilssg nngtleykas
      361 lapispgrys pipkhmlved dytrppepvy stvnklcdkp psprhyspve cdksflltap
      421 yphyhvgllp dseitshsqh statrpptvs lqrtisvege prkiilhkgs tglgfnivgg
      481 edgegifvsf ilaggpadls gelqrgdqil svngidlrga theqaaaalk gagqtvtiia
      541 qyqpeeyarf eakihdlreq mmnhsmssgs gslrtnqkrs lyvramfdyd kskdsglpsq
      601 glsfkygdil hvinasddew wqarrvtleg dseemgvips krrverkera rlktvkfnak
      661 pgvidakgsf ndkrkknfif srkfpfyksk ehseqetsdp eqhvssnasd sessyrgqed
      721 cilsyepvtr qeinytrpvi ilgpmkdrin ddlisefpdk fgscvphttr pkrdyevdgr
      781 dyhfvisreq mekdiqehkf ieagqyndnl ygtsvqsvrf vaergkhcil dvsgnaikrl
      841 qvaqlypiai fikpkswepl memnkrltee qakktydrai kleqefgeyf taivqgdsle
      901 diynqcklvi eeqsgpfiwi pskekl
//
LOCUS       XP_009563421             912 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X18 [Cuculus canorus].
ACCESSION   XP_009563421
VERSION     XP_009563421.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565126.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009563421.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..912
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..912
                     /product="disks large homolog 2 isoform X18"
                     /calculated_mol_wt=101448
     Region          49..138
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          137..225
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(148..154,171,174,204,208,211..212)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          234..318
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(243..249,266,269,299,303,306..307)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          319..387
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          460..550
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(472..478,489,492,522,526,529..530)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          576..649
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(584,606..607)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(587,589,592,601,619..620,639,641..642)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          721..899
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..912
                     /gene="DLG2"
                     /coded_by="XM_009565126.2:96..2834"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mhahlpkqhs cgrgseglda grslppiard ardvhcacrw hqhppglqys sqalpswgpg
       61 aasqnrskfv plwdtvqksp hrspakaqgn pgewwsecac ahgwsppvqa spapiivntd
      121 tldtipyvng teieyefeei tlergnsglg fsiaggtdnp higddpgifi tkiipggaaa
      181 edgrlrvndc ilrvnevdvs evshskavea lkeagsivrl yvrrrrpile tvveiklfkg
      241 pkglgfsiag gvgnqhipgd nsiyvtkiid ggaaqkdgrl qvgdrllmvn nysleevthe
      301 eavailknts dvvylkvgkp ttiymtdpyg ppdithsysp pmenhilssg nngtleykas
      361 lapispgrys pipkhmlved dytrppepvy stvnklcdkp psprhyspve cdksflltap
      421 yphyhvgllp dseitshsqh statrpptvs lqrtisvege prkiilhkgs tglgfnivgg
      481 edgegifvsf ilaggpadls gelqrgdqil svngidlrga theqaaaalk gagqtvtiia
      541 qyqpeeyarf eakihdlreq mmnhsmssgs gslrtnqkrs lyvramfdyd kskdsglpsq
      601 glsfkygdil hvinasddew wqarrvtleg dseemgvips krrverkera rlktvkfnak
      661 pgvidakgsf ndkrkknfif srkfpfyksk ehseqetsdp ergqedcils yepvtrqein
      721 ytrpviilgp mkdrinddli sefpdkfgsc vphttrpkrd yevdgrdyhf visreqmekd
      781 iqehkfieag qyndnlygts vqsvrfvaer gkhcildvsg naikrlqvaq lypiaifikp
      841 ksweplmemn krlteeqakk tydraikleq efgeyftaiv qgdslediyn qcklvieeqs
      901 gpfiwipske kl
//
LOCUS       XP_053928032             911 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X19 [Cuculus canorus].
ACCESSION   XP_053928032
VERSION     XP_053928032.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072057.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..911
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..911
                     /product="disks large homolog 2 isoform X19"
                     /calculated_mol_wt=101890
     Region          41..123
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          122..210
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(133..139,156,159,189,193,196..197)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          219..303
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(228..234,251,254,284,288,291..292)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          304..372
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          445..535
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(457..463,474,477,507,511,514..515)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          561..634
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(569,591..592)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(572,574,577,586,604..605,624,626..627)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          720..898
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..911
                     /gene="DLG2"
                     /coded_by="XM_054072057.1:703..3438"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mlgivcvpfv qsrdaeywsi cslftamffa cycalrtnvk kyryqdedap hdhtlprlth
       61 evrgpelvhv seknlsqien vhgyvlqshi splkaspapi ivntdtldti pyvngteiey
      121 efeeitlerg nsglgfsiag gtdnphigdd pgifitkiip ggaaaedgrl rvndcilrvn
      181 evdvsevshs kavealkeag sivrlyvrrr rpiletvvei klfkgpkglg fsiaggvgnq
      241 hipgdnsiyv tkiidggaaq kdgrlqvgdr llmvnnysle evtheeavai lkntsdvvyl
      301 kvgkpttiym tdpygppdit hsysppmenh ilssgnngtl eykaslapis pgryspipkh
      361 mlveddytrp pepvystvnk lcdkppsprh yspvecdksf lltapyphyh vgllpdseit
      421 shsqhstatr pptvslqrti svegeprkii lhkgstglgf nivggedgeg ifvsfilagg
      481 padlsgelqr gdqilsvngi dlrgatheqa aaalkgagqt vtiiaqyqpe eyarfeakih
      541 dlreqmmnhs mssgsgslrt nqkrslyvra mfdydkskds glpsqglsfk ygdilhvina
      601 sddewwqarr vtlegdseem gvipskrrve rkerarlktv kfnakpgvid akgsfndkrk
      661 knfifsrkfp fykskehseq etsdpeqhvs snasdsessy rgqedcilsy epvtrqeiny
      721 trpviilgpm kdrinddlis efpdkfgscv phttrpkrdy evdgrdyhfv isreqmekdi
      781 qehkfieagq yndnlygtsv qsvrfvaerg khcildvsgn aikrlqvaql ypiaifikpk
      841 sweplmemnk rlteeqakkt ydraikleqe fgeyftaivq gdslediynq cklvieeqsg
      901 pfiwipskek l
//
LOCUS       XP_053928036             908 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X20 [Cuculus canorus].
ACCESSION   XP_053928036
VERSION     XP_053928036.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072061.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..908
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..908
                     /product="disks large homolog 2 isoform X20"
                     /calculated_mol_wt=101487
     Region          38..120
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          119..207
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(130..136,153,156,186,190,193..194)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          216..300
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(225..231,248,251,281,285,288..289)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          301..369
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          442..532
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(454..460,471,474,504,508,511..512)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          558..631
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(566,588..589)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(569,571,574,583,601..602,621,623..624)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          717..895
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..908
                     /gene="DLG2"
                     /coded_by="XM_054072061.1:479..3205"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mdclcivttk kgqeeenptg rglqlgpfpe mewtntqkyr yqdedaphdh tlprlthevr
       61 gpelvhvsek nlsqienvhg yvlqshispl kaspapiivn tdtldtipyv ngteieyefe
      121 eitlergnsg lgfsiaggtd nphigddpgi fitkiipgga aaedgrlrvn dcilrvnevd
      181 vsevshskav ealkeagsiv rlyvrrrrpi letvveiklf kgpkglgfsi aggvgnqhip
      241 gdnsiyvtki idggaaqkdg rlqvgdrllm vnnysleevt heeavailkn tsdvvylkvg
      301 kpttiymtdp ygppdithsy sppmenhils sgnngtleyk aslapispgr yspipkhmlv
      361 eddytrppep vystvnklcd kppsprhysp vecdksfllt apyphyhvgl lpdseitshs
      421 qhstatrppt vslqrtisve geprkiilhk gstglgfniv ggedgegifv sfilaggpad
      481 lsgelqrgdq ilsvngidlr gatheqaaaa lkgagqtvti iaqyqpeeya rfeakihdlr
      541 eqmmnhsmss gsgslrtnqk rslyvramfd ydkskdsglp sqglsfkygd ilhvinasdd
      601 ewwqarrvtl egdseemgvi pskrrverke rarlktvkfn akpgvidakg sfndkrkknf
      661 ifsrkfpfyk skehseqets dpeqhvssna sdsessyrgq edcilsyepv trqeinytrp
      721 viilgpmkdr inddlisefp dkfgscvpht trpkrdyevd grdyhfvisr eqmekdiqeh
      781 kfieagqynd nlygtsvqsv rfvaergkhc ildvsgnaik rlqvaqlypi aifikpkswe
      841 plmemnkrlt eeqakktydr aikleqefge yftaivqgds lediynqckl vieeqsgpfi
      901 wipskekl
//
LOCUS       XP_053928042             906 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X21 [Cuculus canorus].
ACCESSION   XP_053928042
VERSION     XP_053928042.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072067.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..906
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..906
                     /product="disks large homolog 2 isoform X21"
                     /calculated_mol_wt=101218
     Region          36..118
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          117..205
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(128..134,151,154,184,188,191..192)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          214..298
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(223..229,246,249,279,283,286..287)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          299..367
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          440..530
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(452..458,469,472,502,506,509..510)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          556..629
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(564,586..587)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(567,569,572,581,599..600,619,621..622)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          715..893
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..906
                     /gene="DLG2"
                     /coded_by="XM_054072067.1:479..3199"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mdclcivttk qshgrcpshk csvetpawmp iqhstkyryq dedaphdhtl prlthevrgp
       61 elvhvseknl sqienvhgyv lqshisplka spapiivntd tldtipyvng teieyefeei
      121 tlergnsglg fsiaggtdnp higddpgifi tkiipggaaa edgrlrvndc ilrvnevdvs
      181 evshskavea lkeagsivrl yvrrrrpile tvveiklfkg pkglgfsiag gvgnqhipgd
      241 nsiyvtkiid ggaaqkdgrl qvgdrllmvn nysleevthe eavailknts dvvylkvgkp
      301 ttiymtdpyg ppdithsysp pmenhilssg nngtleykas lapispgrys pipkhmlved
      361 dytrppepvy stvnklcdkp psprhyspve cdksflltap yphyhvgllp dseitshsqh
      421 statrpptvs lqrtisvege prkiilhkgs tglgfnivgg edgegifvsf ilaggpadls
      481 gelqrgdqil svngidlrga theqaaaalk gagqtvtiia qyqpeeyarf eakihdlreq
      541 mmnhsmssgs gslrtnqkrs lyvramfdyd kskdsglpsq glsfkygdil hvinasddew
      601 wqarrvtleg dseemgvips krrverkera rlktvkfnak pgvidakgsf ndkrkknfif
      661 srkfpfyksk ehseqetsdp eqhvssnasd sessyrgqed cilsyepvtr qeinytrpvi
      721 ilgpmkdrin ddlisefpdk fgscvphttr pkrdyevdgr dyhfvisreq mekdiqehkf
      781 ieagqyndnl ygtsvqsvrf vaergkhcil dvsgnaikrl qvaqlypiai fikpkswepl
      841 memnkrltee qakktydrai kleqefgeyf taivqgdsle diynqcklvi eeqsgpfiwi
      901 pskekl
//
LOCUS       XP_053928047             905 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X22 [Cuculus canorus].
ACCESSION   XP_053928047
VERSION     XP_053928047.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072072.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..905
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..905
                     /product="disks large homolog 2 isoform X22"
                     /calculated_mol_wt=101097
     Region          35..117
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          116..204
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(127..133,150,153,183,187,190..191)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          213..297
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(222..228,245,248,278,282,285..286)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          298..366
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          439..529
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(451..457,468,471,501,505,508..509)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          555..628
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(563,585..586)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(566,568,571,580,598..599,618,620..621)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          714..892
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..905
                     /gene="DLG2"
                     /coded_by="XM_054072072.1:950..3667"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mcpivrnpdc ftpmichckv actnntlslm fgckkyryqd edaphdhtlp rlthevrgpe
       61 lvhvseknls qienvhgyvl qshisplkas papiivntdt ldtipyvngt eieyefeeit
      121 lergnsglgf siaggtdnph igddpgifit kiipggaaae dgrlrvndci lrvnevdvse
      181 vshskaveal keagsivrly vrrrrpilet vveiklfkgp kglgfsiagg vgnqhipgdn
      241 siyvtkiidg gaaqkdgrlq vgdrllmvnn ysleevthee availkntsd vvylkvgkpt
      301 tiymtdpygp pdithsyspp menhilssgn ngtleykasl apispgrysp ipkhmlvedd
      361 ytrppepvys tvnklcdkpp sprhyspvec dksflltapy phyhvgllpd seitshsqhs
      421 tatrpptvsl qrtisvegep rkiilhkgst glgfnivgge dgegifvsfi laggpadlsg
      481 elqrgdqils vngidlrgat heqaaaalkg agqtvtiiaq yqpeeyarfe akihdlreqm
      541 mnhsmssgsg slrtnqkrsl yvramfdydk skdsglpsqg lsfkygdilh vinasddeww
      601 qarrvtlegd seemgvipsk rrverkerar lktvkfnakp gvidakgsfn dkrkknfifs
      661 rkfpfykske hseqetsdpe qhvssnasds essyrgqedc ilsyepvtrq einytrpvii
      721 lgpmkdrind dlisefpdkf gscvphttrp krdyevdgrd yhfvisreqm ekdiqehkfi
      781 eagqyndnly gtsvqsvrfv aergkhcild vsgnaikrlq vaqlypiaif ikpksweplm
      841 emnkrlteeq akktydraik leqefgeyft aivqgdsled iynqcklvie eqsgpfiwip
      901 skekl
//
LOCUS       XP_053928055             905 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X23 [Cuculus canorus].
ACCESSION   XP_053928055
VERSION     XP_053928055.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072080.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..905
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..905
                     /product="disks large homolog 2 isoform X23"
                     /calculated_mol_wt=101089
     Region          35..117
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          116..204
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(127..133,150,153,183,187,190..191)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          213..297
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(222..228,245,248,278,282,285..286)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          298..366
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          439..529
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(451..457,468,471,501,505,508..509)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          555..628
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(563,585..586)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(566,568,571,580,598..599,618,620..621)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          714..892
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..905
                     /gene="DLG2"
                     /coded_by="XM_054072080.1:479..3196"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mdclcivttk shgrcpshkc svetpawmpi qhstkyryqd edaphdhtlp rlthevrgpe
       61 lvhvseknls qienvhgyvl qshisplkas papiivntdt ldtipyvngt eieyefeeit
      121 lergnsglgf siaggtdnph igddpgifit kiipggaaae dgrlrvndci lrvnevdvse
      181 vshskaveal keagsivrly vrrrrpilet vveiklfkgp kglgfsiagg vgnqhipgdn
      241 siyvtkiidg gaaqkdgrlq vgdrllmvnn ysleevthee availkntsd vvylkvgkpt
      301 tiymtdpygp pdithsyspp menhilssgn ngtleykasl apispgrysp ipkhmlvedd
      361 ytrppepvys tvnklcdkpp sprhyspvec dksflltapy phyhvgllpd seitshsqhs
      421 tatrpptvsl qrtisvegep rkiilhkgst glgfnivgge dgegifvsfi laggpadlsg
      481 elqrgdqils vngidlrgat heqaaaalkg agqtvtiiaq yqpeeyarfe akihdlreqm
      541 mnhsmssgsg slrtnqkrsl yvramfdydk skdsglpsqg lsfkygdilh vinasddeww
      601 qarrvtlegd seemgvipsk rrverkerar lktvkfnakp gvidakgsfn dkrkknfifs
      661 rkfpfykske hseqetsdpe qhvssnasds essyrgqedc ilsyepvtrq einytrpvii
      721 lgpmkdrind dlisefpdkf gscvphttrp krdyevdgrd yhfvisreqm ekdiqehkfi
      781 eagqyndnly gtsvqsvrfv aergkhcild vsgnaikrlq vaqlypiaif ikpksweplm
      841 emnkrlteeq akktydraik leqefgeyft aivqgdsled iynqcklvie eqsgpfiwip
      901 skekl
//
LOCUS       XP_053928065             900 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X24 [Cuculus canorus].
ACCESSION   XP_053928065
VERSION     XP_053928065.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072090.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..900
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..900
                     /product="disks large homolog 2 isoform X24"
                     /calculated_mol_wt=100713
     Region          <83..112
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          111..199
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(122..128,145,148,178,182,185..186)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          208..292
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(217..223,240,243,273,277,280..281)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          293..361
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          434..524
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(446..452,463,466,496,500,503..504)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          550..623
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(558,580..581)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(561,563,566,575,593..594,613,615..616)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          709..887
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..900
                     /gene="DLG2"
                     /coded_by="XM_054072090.1:191..2893"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mnylvvnnsa linhrgsvps vkaashevfh phyqkrcsld gqkgktqess qlkwpsllti
       61 fkwrqsleer llkkhktrln cfqaspapii vntdtldtip yvngteieye feeitlergn
      121 sglgfsiagg tdnphigddp gifitkiipg gaaaedgrlr vndcilrvne vdvsevshsk
      181 avealkeags ivrlyvrrrr piletvveik lfkgpkglgf siaggvgnqh ipgdnsiyvt
      241 kiidggaaqk dgrlqvgdrl lmvnnyslee vtheeavail kntsdvvylk vgkpttiymt
      301 dpygppdith sysppmenhi lssgnngtle ykaslapisp gryspipkhm lveddytrpp
      361 epvystvnkl cdkppsprhy spvecdksfl ltapyphyhv gllpdseits hsqhstatrp
      421 ptvslqrtis vegeprkiil hkgstglgfn ivggedgegi fvsfilaggp adlsgelqrg
      481 dqilsvngid lrgatheqaa aalkgagqtv tiiaqyqpee yarfeakihd lreqmmnhsm
      541 ssgsgslrtn qkrslyvram fdydkskdsg lpsqglsfky gdilhvinas ddewwqarrv
      601 tlegdseemg vipskrrver kerarlktvk fnakpgvida kgsfndkrkk nfifsrkfpf
      661 ykskehseqe tsdpeqhvss nasdsessyr gqedcilsye pvtrqeinyt rpviilgpmk
      721 drinddlise fpdkfgscvp httrpkrdye vdgrdyhfvi sreqmekdiq ehkfieagqy
      781 ndnlygtsvq svrfvaergk hcildvsgna ikrlqvaqly piaifikpks weplmemnkr
      841 lteeqakkty draikleqef geyftaivqg dslediynqc klvieeqsgp fiwipskekl
//
LOCUS       XP_053928072             894 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X25 [Cuculus canorus].
ACCESSION   XP_053928072
VERSION     XP_053928072.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072097.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..894
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..894
                     /product="disks large homolog 2 isoform X25"
                     /calculated_mol_wt=98887
     Region          49..138
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          137..225
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(148..154,171,174,204,208,211..212)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          234..318
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(243..249,266,269,299,303,306..307)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          319..387
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          460..550
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(472..478,489,492,522,526,529..530)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          576..649
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(584,606..607)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(587,589,592,601,619..620,639,641..642)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          703..881
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..894
                     /gene="DLG2"
                     /coded_by="XM_054072097.1:92..2776"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mhahlpkqhs cgrgseglda grslppiard ardvhcacrw hqhppglqys sqalpswgpg
       61 aasqnrskfv plwdtvqksp hrspakaqgn pgewwsecac ahgwsppvqa spapiivntd
      121 tldtipyvng teieyefeei tlergnsglg fsiaggtdnp higddpgifi tkiipggaaa
      181 edgrlrvndc ilrvnevdvs evshskavea lkeagsivrl yvrrrrpile tvveiklfkg
      241 pkglgfsiag gvgnqhipgd nsiyvtkiid ggaaqkdgrl qvgdrllmvn nysleevthe
      301 eavailknts dvvylkvgkp ttiymtdpyg ppdithsysp pmenhilssg nngtleykas
      361 lapispgrys pipkhmlved dytrppepvy stvnklcdkp psprhyspve cdksflltap
      421 yphyhvgllp dseitshsqh statrpptvs lqrtisvege prkiilhkgs tglgfnivgg
      481 edgegifvsf ilaggpadls gelqrgdqil svngidlrga theqaaaalk gagqtvtiia
      541 qyqpeeyarf eakihdlreq mmnhsmssgs gslrtnqkrs lyvramfdyd kskdsglpsq
      601 glsfkygdil hvinasddew wqarrvtleg dseemgvips krrverkera rlktvkfnak
      661 pgvidakgdi pglgddgygt ktlrgqedci lsyepvtrqe inytrpviil gpmkdrindd
      721 lisefpdkfg scvphttrpk rdyevdgrdy hfvisreqme kdiqehkfie agqyndnlyg
      781 tsvqsvrfva ergkhcildv sgnaikrlqv aqlypiaifi kpksweplme mnkrlteeqa
      841 kktydraikl eqefgeyfta ivqgdsledi ynqcklviee qsgpfiwips kekl
//
LOCUS       XP_053928079             881 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X26 [Cuculus canorus].
ACCESSION   XP_053928079
VERSION     XP_053928079.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072104.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..881
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..881
                     /product="disks large homolog 2 isoform X26"
                     /calculated_mol_wt=98430
     Region          11..93
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          92..180
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(103..109,126,129,159,163,166..167)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          189..273
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(198..204,221,224,254,258,261..262)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          274..342
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          415..505
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(427..433,444,447,477,481,484..485)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          531..604
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(539,561..562)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(542,544,547,556,574..575,594,596..597)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          690..868
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..881
                     /gene="DLG2"
                     /coded_by="XM_054072104.1:478..3123"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mdclcivttk kyryqdedap hdhtlprlth evrgpelvhv seknlsqien vhgyvlqshi
       61 splkaspapi ivntdtldti pyvngteiey efeeitlerg nsglgfsiag gtdnphigdd
      121 pgifitkiip ggaaaedgrl rvndcilrvn evdvsevshs kavealkeag sivrlyvrrr
      181 rpiletvvei klfkgpkglg fsiaggvgnq hipgdnsiyv tkiidggaaq kdgrlqvgdr
      241 llmvnnysle evtheeavai lkntsdvvyl kvgkpttiym tdpygppdit hsysppmenh
      301 ilssgnngtl eykaslapis pgryspipkh mlveddytrp pepvystvnk lcdkppsprh
      361 yspvecdksf lltapyphyh vgllpdseit shsqhstatr pptvslqrti svegeprkii
      421 lhkgstglgf nivggedgeg ifvsfilagg padlsgelqr gdqilsvngi dlrgatheqa
      481 aaalkgagqt vtiiaqyqpe eyarfeakih dlreqmmnhs mssgsgslrt nqkrslyvra
      541 mfdydkskds glpsqglsfk ygdilhvina sddewwqarr vtlegdseem gvipskrrve
      601 rkerarlktv kfnakpgvid akgsfndkrk knfifsrkfp fykskehseq etsdpeqhvs
      661 snasdsessy rgqedcilsy epvtrqeiny trpviilgpm kdrinddlis efpdkfgscv
      721 phttrpkrdy evdgrdyhfv isreqmekdi qehkfieagq yndnlygtsv qsvrfvaerg
      781 khcildvsgn aikrlqvaql ypiaifikpk sweplmemnk rlteeqakkt ydraikleqe
      841 fgeyftaivq gdslediynq cklvieeqsg pfiwipskek l
//
LOCUS       XP_053928088             873 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X27 [Cuculus canorus].
ACCESSION   XP_053928088
VERSION     XP_053928088.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072113.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..873
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..873
                     /product="disks large homolog 2 isoform X27"
                     /calculated_mol_wt=97056
     Region          35..117
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          116..204
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(127..133,150,153,183,187,190..191)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          213..297
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(222..228,245,248,278,282,285..286)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          298..366
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          439..529
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(451..457,468,471,501,505,508..509)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          555..628
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(563,585..586)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(566,568,571,580,598..599,618,620..621)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          682..860
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..873
                     /gene="DLG2"
                     /coded_by="XM_054072113.1:941..3562"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mcpivrnpdc ftpmichckv actnntlslm fgckkyryqd edaphdhtlp rlthevrgpe
       61 lvhvseknls qienvhgyvl qshisplkas papiivntdt ldtipyvngt eieyefeeit
      121 lergnsglgf siaggtdnph igddpgifit kiipggaaae dgrlrvndci lrvnevdvse
      181 vshskaveal keagsivrly vrrrrpilet vveiklfkgp kglgfsiagg vgnqhipgdn
      241 siyvtkiidg gaaqkdgrlq vgdrllmvnn ysleevthee availkntsd vvylkvgkpt
      301 tiymtdpygp pdithsyspp menhilssgn ngtleykasl apispgrysp ipkhmlvedd
      361 ytrppepvys tvnklcdkpp sprhyspvec dksflltapy phyhvgllpd seitshsqhs
      421 tatrpptvsl qrtisvegep rkiilhkgst glgfnivgge dgegifvsfi laggpadlsg
      481 elqrgdqils vngidlrgat heqaaaalkg agqtvtiiaq yqpeeyarfe akihdlreqm
      541 mnhsmssgsg slrtnqkrsl yvramfdydk skdsglpsqg lsfkygdilh vinasddeww
      601 qarrvtlegd seemgvipsk rrverkerar lktvkfnakp gvidakgdip glgddgygtk
      661 tlrgqedcil syepvtrqei nytrpviilg pmkdrinddl isefpdkfgs cvphttrpkr
      721 dyevdgrdyh fvisreqmek diqehkfiea gqyndnlygt svqsvrfvae rgkhcildvs
      781 gnaikrlqva qlypiaifik pksweplmem nkrlteeqak ktydraikle qefgeyftai
      841 vqgdslediy nqcklvieeq sgpfiwipsk ekl
//
LOCUS       XP_053928096             860 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X28 [Cuculus canorus].
ACCESSION   XP_053928096
VERSION     XP_053928096.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072121.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..860
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..860
                     /product="disks large homolog 2 isoform X28"
                     /calculated_mol_wt=95573
     Region          49..138
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          137..225
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(148..154,171,174,204,208,211..212)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          234..318
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(243..249,266,269,299,303,306..307)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          319..383
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          408..498
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(420..426,437,440,470,474,477..478)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          524..597
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(532,554..555)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(535,537,540,549,567..568,587,589..590)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          669..847
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..860
                     /gene="DLG2"
                     /coded_by="XM_054072121.1:103..2685"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mhahlpkqhs cgrgseglda grslppiard ardvhcacrw hqhppglqys sqalpswgpg
       61 aasqnrskfv plwdtvqksp hrspakaqgn pgewwsecac ahgwsppvqa spapiivntd
      121 tldtipyvng teieyefeei tlergnsglg fsiaggtdnp higddpgifi tkiipggaaa
      181 edgrlrvndc ilrvnevdvs evshskavea lkeagsivrl yvrrrrpile tvveiklfkg
      241 pkglgfsiag gvgnqhipgd nsiyvtkiid ggaaqkdgrl qvgdrllmvn nysleevthe
      301 eavailknts dvvylkvgkp ttiymtdpyg ppdithsysp pmenhilssg nngtleykas
      361 lapispgrys pipkhmlved dytshsqhst atrpptvslq rtisvegepr kiilhkgstg
      421 lgfnivgged gegifvsfil aggpadlsge lqrgdqilsv ngidlrgath eqaaaalkga
      481 gqtvtiiaqy qpeeyarfea kihdlreqmm nhsmssgsgs lrtnqkrsly vramfdydks
      541 kdsglpsqgl sfkygdilhv inasddewwq arrvtlegds eemgvipskr rverkerarl
      601 ktvkfnakpg vidakgsfnd krkknfifsr kfpfykskeh seqetsdper gqedcilsye
      661 pvtrqeinyt rpviilgpmk drinddlise fpdkfgscvp httrpkrdye vdgrdyhfvi
      721 sreqmekdiq ehkfieagqy ndnlygtsvq svrfvaergk hcildvsgna ikrlqvaqly
      781 piaifikpks weplmemnkr lteeqakkty draikleqef geyftaivqg dslediynqc
      841 klvieeqsgp fiwipskekl
//
LOCUS       XP_053928103             843 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X29 [Cuculus canorus].
ACCESSION   XP_053928103
VERSION     XP_053928103.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072128.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..843
                     /product="disks large homolog 2 isoform X29"
                     /calculated_mol_wt=94148
     Region          <15..55
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          54..142
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(65..71,88,91,121,125,128..129)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          151..235
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(160..166,183,186,216,220,223..224)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          236..304
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          377..467
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(389..395,406,409,439,443,446..447)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          493..566
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(501,523..524)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(504,506,509,518,536..537,556,558..559)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          652..830
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..843
                     /gene="DLG2"
                     /coded_by="XM_054072128.1:250..2781"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mfasiwyakk lgrrfvhnar kaktekaspa piivntdtld tipyvngtei eyefeeitle
       61 rgnsglgfsi aggtdnphig ddpgifitki ipggaaaedg rlrvndcilr vnevdvsevs
      121 hskavealke agsivrlyvr rrrpiletvv eiklfkgpkg lgfsiaggvg nqhipgdnsi
      181 yvtkiidgga aqkdgrlqvg drllmvnnys leevtheeav ailkntsdvv ylkvgkptti
      241 ymtdpygppd ithsysppme nhilssgnng tleykaslap ispgryspip khmlveddyt
      301 rppepvystv nklcdkppsp rhyspvecdk sflltapyph yhvgllpdse itshsqhsta
      361 trpptvslqr tisvegeprk iilhkgstgl gfnivggedg egifvsfila ggpadlsgel
      421 qrgdqilsvn gidlrgathe qaaaalkgag qtvtiiaqyq peeyarfeak ihdlreqmmn
      481 hsmssgsgsl rtnqkrslyv ramfdydksk dsglpsqgls fkygdilhvi nasddewwqa
      541 rrvtlegdse emgvipskrr verkerarlk tvkfnakpgv idakgsfndk rkknfifsrk
      601 fpfykskehs eqetsdpeqh vssnasdses syrgqedcil syepvtrqei nytrpviilg
      661 pmkdrinddl isefpdkfgs cvphttrpkr dyevdgrdyh fvisreqmek diqehkfiea
      721 gqyndnlygt svqsvrfvae rgkhcildvs gnaikrlqva qlypiaifik pksweplmem
      781 nkrlteeqak ktydraikle qefgeyftai vqgdslediy nqcklvieeq sgpfiwipsk
      841 ekl
//
LOCUS       XP_053928111             842 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X30 [Cuculus canorus].
ACCESSION   XP_053928111
VERSION     XP_053928111.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072136.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..842
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..842
                     /product="disks large homolog 2 isoform X30"
                     /calculated_mol_wt=93012
     Region          49..138
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          137..225
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(148..154,171,174,204,208,211..212)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          234..318
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(243..249,266,269,299,303,306..307)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          319..383
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          408..498
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(420..426,437,440,470,474,477..478)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          524..597
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(532,554..555)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(535,537,540,549,567..568,587,589..590)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          651..829
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..842
                     /gene="DLG2"
                     /coded_by="XM_054072136.1:99..2627"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mhahlpkqhs cgrgseglda grslppiard ardvhcacrw hqhppglqys sqalpswgpg
       61 aasqnrskfv plwdtvqksp hrspakaqgn pgewwsecac ahgwsppvqa spapiivntd
      121 tldtipyvng teieyefeei tlergnsglg fsiaggtdnp higddpgifi tkiipggaaa
      181 edgrlrvndc ilrvnevdvs evshskavea lkeagsivrl yvrrrrpile tvveiklfkg
      241 pkglgfsiag gvgnqhipgd nsiyvtkiid ggaaqkdgrl qvgdrllmvn nysleevthe
      301 eavailknts dvvylkvgkp ttiymtdpyg ppdithsysp pmenhilssg nngtleykas
      361 lapispgrys pipkhmlved dytshsqhst atrpptvslq rtisvegepr kiilhkgstg
      421 lgfnivgged gegifvsfil aggpadlsge lqrgdqilsv ngidlrgath eqaaaalkga
      481 gqtvtiiaqy qpeeyarfea kihdlreqmm nhsmssgsgs lrtnqkrsly vramfdydks
      541 kdsglpsqgl sfkygdilhv inasddewwq arrvtlegds eemgvipskr rverkerarl
      601 ktvkfnakpg vidakgdipg lgddgygtkt lrgqedcils yepvtrqein ytrpviilgp
      661 mkdrinddli sefpdkfgsc vphttrpkrd yevdgrdyhf visreqmekd iqehkfieag
      721 qyndnlygts vqsvrfvaer gkhcildvsg naikrlqvaq lypiaifikp ksweplmemn
      781 krlteeqakk tydraikleq efgeyftaiv qgdslediyn qcklvieeqs gpfiwipske
      841 kl
//
LOCUS       XP_053928119             811 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X31 [Cuculus canorus].
ACCESSION   XP_053928119
VERSION     XP_053928119.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072144.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..811
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..811
                     /product="disks large homolog 2 isoform X31"
                     /calculated_mol_wt=90107
     Region          <15..55
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          54..142
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(65..71,88,91,121,125,128..129)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          151..235
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(160..166,183,186,216,220,223..224)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          236..304
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          377..467
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(389..395,406,409,439,443,446..447)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          493..566
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(501,523..524)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(504,506,509,518,536..537,556,558..559)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          620..798
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..811
                     /gene="DLG2"
                     /coded_by="XM_054072144.1:245..2680"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mfasiwyakk lgrrfvhnar kaktekaspa piivntdtld tipyvngtei eyefeeitle
       61 rgnsglgfsi aggtdnphig ddpgifitki ipggaaaedg rlrvndcilr vnevdvsevs
      121 hskavealke agsivrlyvr rrrpiletvv eiklfkgpkg lgfsiaggvg nqhipgdnsi
      181 yvtkiidgga aqkdgrlqvg drllmvnnys leevtheeav ailkntsdvv ylkvgkptti
      241 ymtdpygppd ithsysppme nhilssgnng tleykaslap ispgryspip khmlveddyt
      301 rppepvystv nklcdkppsp rhyspvecdk sflltapyph yhvgllpdse itshsqhsta
      361 trpptvslqr tisvegeprk iilhkgstgl gfnivggedg egifvsfila ggpadlsgel
      421 qrgdqilsvn gidlrgathe qaaaalkgag qtvtiiaqyq peeyarfeak ihdlreqmmn
      481 hsmssgsgsl rtnqkrslyv ramfdydksk dsglpsqgls fkygdilhvi nasddewwqa
      541 rrvtlegdse emgvipskrr verkerarlk tvkfnakpgv idakgdipgl gddgygtktl
      601 rgqedcilsy epvtrqeiny trpviilgpm kdrinddlis efpdkfgscv phttrpkrdy
      661 evdgrdyhfv isreqmekdi qehkfieagq yndnlygtsv qsvrfvaerg khcildvsgn
      721 aikrlqvaql ypiaifikpk sweplmemnk rlteeqakkt ydraikleqe fgeyftaivq
      781 gdslediynq cklvieeqsg pfiwipskek l
//
LOCUS       XP_053928130             742 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X32 [Cuculus canorus].
ACCESSION   XP_053928130
VERSION     XP_053928130.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072155.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..742
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..742
                     /product="disks large homolog 2 isoform X32"
                     /calculated_mol_wt=83291
     Region          <1..41
                     /region_name="PDZ_canonical"
                     /note="canonical PDZ domain; cl49608"
                     /db_xref="CDD:483948"
     Region          50..134
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(59..65,82,85,115,119,122..123)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          135..203
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          276..366
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(288..294,305,308,338,342,345..346)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          392..465
                     /region_name="SH3_DLG2"
                     /note="Src Homology 3 domain of Disks Large homolog 2;
                     cd12032"
                     /db_xref="CDD:212965"
     Site            order(400,422..423)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212965"
     Site            order(403,405,408,417,435..436,455,457..458)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          551..729
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..742
                     /gene="DLG2"
                     /coded_by="XM_054072155.1:383..2611"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mwvndcilrv nevdvsevsh skavealkea gsivrlyvrr rrpiletvve iklfkgpkgl
       61 gfsiaggvgn qhipgdnsiy vtkiidggaa qkdgrlqvgd rllmvnnysl eevtheeava
      121 ilkntsdvvy lkvgkpttiy mtdpygppdi thsysppmen hilssgnngt leykaslapi
      181 spgryspipk hmlveddytr ppepvystvn klcdkppspr hyspvecdks flltapyphy
      241 hvgllpdsei tshsqhstat rpptvslqrt isvegeprki ilhkgstglg fnivggedge
      301 gifvsfilag gpadlsgelq rgdqilsvng idlrgatheq aaaalkgagq tvtiiaqyqp
      361 eeyarfeaki hdlreqmmnh smssgsgslr tnqkrslyvr amfdydkskd sglpsqglsf
      421 kygdilhvin asddewwqar rvtlegdsee mgvipskrrv erkerarlkt vkfnakpgvi
      481 dakgsfndkr kknfifsrkf pfykskehse qetsdpeqhv ssnasdsess yrgqedcils
      541 yepvtrqein ytrpviilgp mkdrinddli sefpdkfgsc vphttrpkrd yevdgrdyhf
      601 visreqmekd iqehkfieag qyndnlygts vqsvrfvaer gkhcildvsg naikrlqvaq
      661 lypiaifikp ksweplmemn krlteeqakk tydraikleq efgeyftaiv qgdslediyn
      721 qcklvieeqs gpfiwipske kl
//
LOCUS       XP_053928141             366 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 2 isoform X33 [Cuculus canorus].
ACCESSION   XP_053928141
VERSION     XP_053928141.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072166.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..366
                     /product="disks large homolog 2 isoform X33"
                     /calculated_mol_wt=42288
     Region          16..89
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(27,29,32,41,59..60,79,81..82)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212965"
     Region          175..353
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..366
                     /gene="DLG2"
                     /coded_by="XM_054072166.1:367..1467"
                     /db_xref="GeneID:104062984"
ORIGIN      
        1 mmnhsmssgs gslrtnqkrs lyvramfdyd kskdsglpsq glsfkygdil hvinasddew
       61 wqarrvtleg dseemgvips krrverkera rlktvkfnak pgvidakgsf ndkrkknfif
      121 srkfpfyksk ehseqetsdp eqhvssnasd sessyrgqed cilsyepvtr qeinytrpvi
      181 ilgpmkdrin ddlisefpdk fgscvphttr pkrdyevdgr dyhfvisreq mekdiqehkf
      241 ieagqyndnl ygtsvqsvrf vaergkhcil dvsgnaikrl qvaqlypiai fikpkswepl
      301 memnkrltee qakktydrai kleqefgeyf taivqgdsle diynqcklvi eeqsgpfiwi
      361 pskekl
//
LOCUS       XP_053928161             710 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein P2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053928161
VERSION     XP_053928161.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072186.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..710
                     /product="forkhead box protein P2 isoform X1"
                     /calculated_mol_wt=79189
     Region          337..404
                     /region_name="FOXP-CC"
                     /note="FOXP coiled-coil domain; pfam16159"
                     /db_xref="CDD:465036"
     Region          472..>703
                     /region_name="COG5025"
                     /note="Transcription factor of the Forkhead/HNF3 family
                     [Transcription]"
                     /db_xref="CDD:227358"
     Region          498..579
                     /region_name="FH_FOXP2"
                     /note="Forkhead (FH) domain found in Forkhead box protein
                     P2 (FOXP2); cd20065"
                     /db_xref="CDD:410839"
     Site            order(503..510,512,514,518..522,526,528..530,532..533,
                     535..536,538,543..544,546..548,550..551,557,560,566..570,
                     572,575)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:410839"
     Site            order(535,538,542,545,548..549,552,577..578)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410839"
     CDS             1..710
                     /gene="FOXP2"
                     /coded_by="XM_054072186.1:594..2726"
                     /db_xref="GeneID:104064341"
ORIGIN      
        1 mmqesateti snssmnqngm stlssqldag srdgrssgdt stevstvell hlqqqqalqa
       61 arqlllqqqt sglkspkgsd kqrplqvpvs vammtpqvit pqqmqqilqq qvlspqqlqa
      121 llqqqqavml qqqqlqefyk kqqeqlhlql lqqqqqqqqq qqqqqqqqqq qqqqqqqqqq
      181 qqqqqqqqqq hpgkqakeqq qqqqlaaqql vfqqqllqmq qlqqqqhlln lqrqglisip
      241 pgqsalpvqs lpqaglspae iqqlwkevtg vhsmedngik hggldlttnn sssttsstts
      301 kasppithhs ivngqssvln arrdssshee tgashtlygh gvckwpgces icedfgqflk
      361 hlnnehaldd rstaqcrvqm qvvqqleiql skererlqam mthlhmrpse pkpspkplnl
      421 vssvtmsknm letspqslpq tpttptapvt pitqgpsvit pasvpnvgai rrrhsdkyni
      481 pmsseiapny efyknadvrp pftyatlirq aimessdrql tlneiyswft rtfayfrrna
      541 atwknavrhn lslhkcfvrv envkgavwtv deveyqkrrs qkitgsptlv kniptslgyg
      601 aalnaslqaa laesslplls npglinnass gllqavhedl ngsldhidsn gnsspgcspq
      661 phihsihvke epviaededc pmslvttanh speleddrei eeeplsedle
//
LOCUS       XP_053928171             710 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein P2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053928171
VERSION     XP_053928171.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072196.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..710
                     /product="forkhead box protein P2 isoform X1"
                     /calculated_mol_wt=79189
     Region          337..404
                     /region_name="FOXP-CC"
                     /note="FOXP coiled-coil domain; pfam16159"
                     /db_xref="CDD:465036"
     Region          472..>703
                     /region_name="COG5025"
                     /note="Transcription factor of the Forkhead/HNF3 family
                     [Transcription]"
                     /db_xref="CDD:227358"
     Region          498..579
                     /region_name="FH_FOXP2"
                     /note="Forkhead (FH) domain found in Forkhead box protein
                     P2 (FOXP2); cd20065"
                     /db_xref="CDD:410839"
     Site            order(503..510,512,514,518..522,526,528..530,532..533,
                     535..536,538,543..544,546..548,550..551,557,560,566..570,
                     572,575)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:410839"
     Site            order(535,538,542,545,548..549,552,577..578)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410839"
     CDS             1..710
                     /gene="FOXP2"
                     /coded_by="XM_054072196.1:478..2610"
                     /db_xref="GeneID:104064341"
ORIGIN      
        1 mmqesateti snssmnqngm stlssqldag srdgrssgdt stevstvell hlqqqqalqa
       61 arqlllqqqt sglkspkgsd kqrplqvpvs vammtpqvit pqqmqqilqq qvlspqqlqa
      121 llqqqqavml qqqqlqefyk kqqeqlhlql lqqqqqqqqq qqqqqqqqqq qqqqqqqqqq
      181 qqqqqqqqqq hpgkqakeqq qqqqlaaqql vfqqqllqmq qlqqqqhlln lqrqglisip
      241 pgqsalpvqs lpqaglspae iqqlwkevtg vhsmedngik hggldlttnn sssttsstts
      301 kasppithhs ivngqssvln arrdssshee tgashtlygh gvckwpgces icedfgqflk
      361 hlnnehaldd rstaqcrvqm qvvqqleiql skererlqam mthlhmrpse pkpspkplnl
      421 vssvtmsknm letspqslpq tpttptapvt pitqgpsvit pasvpnvgai rrrhsdkyni
      481 pmsseiapny efyknadvrp pftyatlirq aimessdrql tlneiyswft rtfayfrrna
      541 atwknavrhn lslhkcfvrv envkgavwtv deveyqkrrs qkitgsptlv kniptslgyg
      601 aalnaslqaa laesslplls npglinnass gllqavhedl ngsldhidsn gnsspgcspq
      661 phihsihvke epviaededc pmslvttanh speleddrei eeeplsedle
//
LOCUS       XP_053928179             710 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein P2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053928179
VERSION     XP_053928179.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072204.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..710
                     /product="forkhead box protein P2 isoform X1"
                     /calculated_mol_wt=79189
     Region          337..404
                     /region_name="FOXP-CC"
                     /note="FOXP coiled-coil domain; pfam16159"
                     /db_xref="CDD:465036"
     Region          472..>703
                     /region_name="COG5025"
                     /note="Transcription factor of the Forkhead/HNF3 family
                     [Transcription]"
                     /db_xref="CDD:227358"
     Region          498..579
                     /region_name="FH_FOXP2"
                     /note="Forkhead (FH) domain found in Forkhead box protein
                     P2 (FOXP2); cd20065"
                     /db_xref="CDD:410839"
     Site            order(503..510,512,514,518..522,526,528..530,532..533,
                     535..536,538,543..544,546..548,550..551,557,560,566..570,
                     572,575)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:410839"
     Site            order(535,538,542,545,548..549,552,577..578)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410839"
     CDS             1..710
                     /gene="FOXP2"
                     /coded_by="XM_054072204.1:263..2395"
                     /db_xref="GeneID:104064341"
ORIGIN      
        1 mmqesateti snssmnqngm stlssqldag srdgrssgdt stevstvell hlqqqqalqa
       61 arqlllqqqt sglkspkgsd kqrplqvpvs vammtpqvit pqqmqqilqq qvlspqqlqa
      121 llqqqqavml qqqqlqefyk kqqeqlhlql lqqqqqqqqq qqqqqqqqqq qqqqqqqqqq
      181 qqqqqqqqqq hpgkqakeqq qqqqlaaqql vfqqqllqmq qlqqqqhlln lqrqglisip
      241 pgqsalpvqs lpqaglspae iqqlwkevtg vhsmedngik hggldlttnn sssttsstts
      301 kasppithhs ivngqssvln arrdssshee tgashtlygh gvckwpgces icedfgqflk
      361 hlnnehaldd rstaqcrvqm qvvqqleiql skererlqam mthlhmrpse pkpspkplnl
      421 vssvtmsknm letspqslpq tpttptapvt pitqgpsvit pasvpnvgai rrrhsdkyni
      481 pmsseiapny efyknadvrp pftyatlirq aimessdrql tlneiyswft rtfayfrrna
      541 atwknavrhn lslhkcfvrv envkgavwtv deveyqkrrs qkitgsptlv kniptslgyg
      601 aalnaslqaa laesslplls npglinnass gllqavhedl ngsldhidsn gnsspgcspq
      661 phihsihvke epviaededc pmslvttanh speleddrei eeeplsedle
//
LOCUS       XP_053928184             710 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein P2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053928184
VERSION     XP_053928184.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072209.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..710
                     /product="forkhead box protein P2 isoform X1"
                     /calculated_mol_wt=79189
     Region          337..404
                     /region_name="FOXP-CC"
                     /note="FOXP coiled-coil domain; pfam16159"
                     /db_xref="CDD:465036"
     Region          472..>703
                     /region_name="COG5025"
                     /note="Transcription factor of the Forkhead/HNF3 family
                     [Transcription]"
                     /db_xref="CDD:227358"
     Region          498..579
                     /region_name="FH_FOXP2"
                     /note="Forkhead (FH) domain found in Forkhead box protein
                     P2 (FOXP2); cd20065"
                     /db_xref="CDD:410839"
     Site            order(503..510,512,514,518..522,526,528..530,532..533,
                     535..536,538,543..544,546..548,550..551,557,560,566..570,
                     572,575)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:410839"
     Site            order(535,538,542,545,548..549,552,577..578)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410839"
     CDS             1..710
                     /gene="FOXP2"
                     /coded_by="XM_054072209.1:61..2193"
                     /db_xref="GeneID:104064341"
ORIGIN      
        1 mmqesateti snssmnqngm stlssqldag srdgrssgdt stevstvell hlqqqqalqa
       61 arqlllqqqt sglkspkgsd kqrplqvpvs vammtpqvit pqqmqqilqq qvlspqqlqa
      121 llqqqqavml qqqqlqefyk kqqeqlhlql lqqqqqqqqq qqqqqqqqqq qqqqqqqqqq
      181 qqqqqqqqqq hpgkqakeqq qqqqlaaqql vfqqqllqmq qlqqqqhlln lqrqglisip
      241 pgqsalpvqs lpqaglspae iqqlwkevtg vhsmedngik hggldlttnn sssttsstts
      301 kasppithhs ivngqssvln arrdssshee tgashtlygh gvckwpgces icedfgqflk
      361 hlnnehaldd rstaqcrvqm qvvqqleiql skererlqam mthlhmrpse pkpspkplnl
      421 vssvtmsknm letspqslpq tpttptapvt pitqgpsvit pasvpnvgai rrrhsdkyni
      481 pmsseiapny efyknadvrp pftyatlirq aimessdrql tlneiyswft rtfayfrrna
      541 atwknavrhn lslhkcfvrv envkgavwtv deveyqkrrs qkitgsptlv kniptslgyg
      601 aalnaslqaa laesslplls npglinnass gllqavhedl ngsldhidsn gnsspgcspq
      661 phihsihvke epviaededc pmslvttanh speleddrei eeeplsedle
//
LOCUS       XP_053928194             710 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein P2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053928194
VERSION     XP_053928194.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072219.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..710
                     /product="forkhead box protein P2 isoform X1"
                     /calculated_mol_wt=79189
     Region          337..404
                     /region_name="FOXP-CC"
                     /note="FOXP coiled-coil domain; pfam16159"
                     /db_xref="CDD:465036"
     Region          472..>703
                     /region_name="COG5025"
                     /note="Transcription factor of the Forkhead/HNF3 family
                     [Transcription]"
                     /db_xref="CDD:227358"
     Region          498..579
                     /region_name="FH_FOXP2"
                     /note="Forkhead (FH) domain found in Forkhead box protein
                     P2 (FOXP2); cd20065"
                     /db_xref="CDD:410839"
     Site            order(503..510,512,514,518..522,526,528..530,532..533,
                     535..536,538,543..544,546..548,550..551,557,560,566..570,
                     572,575)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:410839"
     Site            order(535,538,542,545,548..549,552,577..578)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410839"
     CDS             1..710
                     /gene="FOXP2"
                     /coded_by="XM_054072219.1:34..2166"
                     /db_xref="GeneID:104064341"
ORIGIN      
        1 mmqesateti snssmnqngm stlssqldag srdgrssgdt stevstvell hlqqqqalqa
       61 arqlllqqqt sglkspkgsd kqrplqvpvs vammtpqvit pqqmqqilqq qvlspqqlqa
      121 llqqqqavml qqqqlqefyk kqqeqlhlql lqqqqqqqqq qqqqqqqqqq qqqqqqqqqq
      181 qqqqqqqqqq hpgkqakeqq qqqqlaaqql vfqqqllqmq qlqqqqhlln lqrqglisip
      241 pgqsalpvqs lpqaglspae iqqlwkevtg vhsmedngik hggldlttnn sssttsstts
      301 kasppithhs ivngqssvln arrdssshee tgashtlygh gvckwpgces icedfgqflk
      361 hlnnehaldd rstaqcrvqm qvvqqleiql skererlqam mthlhmrpse pkpspkplnl
      421 vssvtmsknm letspqslpq tpttptapvt pitqgpsvit pasvpnvgai rrrhsdkyni
      481 pmsseiapny efyknadvrp pftyatlirq aimessdrql tlneiyswft rtfayfrrna
      541 atwknavrhn lslhkcfvrv envkgavwtv deveyqkrrs qkitgsptlv kniptslgyg
      601 aalnaslqaa laesslplls npglinnass gllqavhedl ngsldhidsn gnsspgcspq
      661 phihsihvke epviaededc pmslvttanh speleddrei eeeplsedle
//
LOCUS       XP_053928201             709 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein P2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053928201
VERSION     XP_053928201.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072226.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..709
                     /product="forkhead box protein P2 isoform X2"
                     /calculated_mol_wt=79061
     Region          336..403
                     /region_name="FOXP-CC"
                     /note="FOXP coiled-coil domain; pfam16159"
                     /db_xref="CDD:465036"
     Region          471..>702
                     /region_name="COG5025"
                     /note="Transcription factor of the Forkhead/HNF3 family
                     [Transcription]"
                     /db_xref="CDD:227358"
     Region          497..578
                     /region_name="FH_FOXP2"
                     /note="Forkhead (FH) domain found in Forkhead box protein
                     P2 (FOXP2); cd20065"
                     /db_xref="CDD:410839"
     Site            order(502..509,511,513,517..521,525,527..529,531..532,
                     534..535,537,542..543,545..547,549..550,556,559,565..569,
                     571,574)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:410839"
     Site            order(534,537,541,544,547..548,551,576..577)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410839"
     CDS             1..709
                     /gene="FOXP2"
                     /coded_by="XM_054072226.1:594..2723"
                     /db_xref="GeneID:104064341"
ORIGIN      
        1 mmqesateti snssmnqngm stlssqldag srdgrssgdt stevstvell hlqqqqalqa
       61 arqlllqqqt sglkspkgsd kqrplqvpvs vammtpqvit pqqmqqilqq qvlspqqlqa
      121 llqqqqavml qqqqlqefyk kqqeqlhlql lqqqqqqqqq qqqqqqqqqq qqqqqqqqqq
      181 qqqqqqqqqq hpgkqakeqq qqqlaaqqlv fqqqllqmqq lqqqqhllnl qrqglisipp
      241 gqsalpvqsl pqaglspaei qqlwkevtgv hsmedngikh ggldlttnns ssttssttsk
      301 asppithhsi vngqssvlna rrdsssheet gashtlyghg vckwpgcesi cedfgqflkh
      361 lnnehalddr staqcrvqmq vvqqleiqls kererlqamm thlhmrpsep kpspkplnlv
      421 ssvtmsknml etspqslpqt pttptapvtp itqgpsvitp asvpnvgair rrhsdkynip
      481 msseiapnye fyknadvrpp ftyatlirqa imessdrqlt lneiyswftr tfayfrrnaa
      541 twknavrhnl slhkcfvrve nvkgavwtvd eveyqkrrsq kitgsptlvk niptslgyga
      601 alnaslqaal aesslpllsn pglinnassg llqavhedln gsldhidsng nsspgcspqp
      661 hihsihvkee pviaededcp mslvttanhs peleddreie eeplsedle
//
LOCUS       XP_053928211             707 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein P2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053928211
VERSION     XP_053928211.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072236.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..707
                     /product="forkhead box protein P2 isoform X3"
                     /calculated_mol_wt=78581
     Region          334..401
                     /region_name="FOXP-CC"
                     /note="FOXP coiled-coil domain; pfam16159"
                     /db_xref="CDD:465036"
     Region          469..>700
                     /region_name="COG5025"
                     /note="Transcription factor of the Forkhead/HNF3 family
                     [Transcription]"
                     /db_xref="CDD:227358"
     Region          495..576
                     /region_name="FH_FOXP2"
                     /note="Forkhead (FH) domain found in Forkhead box protein
                     P2 (FOXP2); cd20065"
                     /db_xref="CDD:410839"
     Site            order(500..507,509,511,515..519,523,525..527,529..530,
                     532..533,535,540..541,543..545,547..548,554,557,563..567,
                     569,572)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:410839"
     Site            order(532,535,539,542,545..546,549,574..575)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410839"
     CDS             1..707
                     /gene="FOXP2"
                     /coded_by="XM_054072236.1:594..2717"
                     /db_xref="GeneID:104064341"
ORIGIN      
        1 mmqesateti snssmnqngm stlssqldag srdgrssgdt stevstvell hlqqqqalqa
       61 arqlllqqqt sglkspkgsd kqrplqvpvs vammtpqvit pqqmqqilqq qvlspqqlqa
      121 llqqqqavml qqdilesale nfrtaleknq qqqqqqqqqq qqqqqqqqqq qqqqqqqqqq
      181 qqqqqqqhpg kqakeqqqqq qlaaqqlvfq qqllqmqqlq qqqhllnlqr qglisippgq
      241 salpvqslpq aglspaeiqq lwkevtgvhs medngikhgg ldlttnnsss ttssttskas
      301 ppithhsivn gqssvlnarr dsssheetga shtlyghgvc kwpgcesice dfgqflkhln
      361 nehalddrst aqcrvqmqvv qqleiqlske rerlqammth lhmrpsepkp spkplnlvss
      421 vtmsknmlet spqslpqtpt tptapvtpit qgpsvitpas vpnvgairrr hsdkynipms
      481 seiapnyefy knadvrppft yatlirqaim essdrqltln eiyswftrtf ayfrrnaatw
      541 knavrhnlsl hkcfvrvenv kgavwtvdev eyqkrrsqki tgsptlvkni ptslgygaal
      601 naslqaalae sslpllsnpg linnassgll qavhedlngs ldhidsngns spgcspqphi
      661 hsihvkeepv iaededcpms lvttanhspe leddreieee plsedle
//
LOCUS       XP_053928215             690 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein P2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053928215
VERSION     XP_053928215.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072240.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..690
                     /product="forkhead box protein P2 isoform X4"
                     /calculated_mol_wt=76636
     Region          317..384
                     /region_name="FOXP-CC"
                     /note="FOXP coiled-coil domain; pfam16159"
                     /db_xref="CDD:465036"
     Region          452..>683
                     /region_name="COG5025"
                     /note="Transcription factor of the Forkhead/HNF3 family
                     [Transcription]"
                     /db_xref="CDD:227358"
     Region          478..559
                     /region_name="FH_FOXP2"
                     /note="Forkhead (FH) domain found in Forkhead box protein
                     P2 (FOXP2); cd20065"
                     /db_xref="CDD:410839"
     Site            order(483..490,492,494,498..502,506,508..510,512..513,
                     515..516,518,523..524,526..528,530..531,537,540,546..550,
                     552,555)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:410839"
     Site            order(515,518,522,525,528..529,532,557..558)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410839"
     CDS             1..690
                     /gene="FOXP2"
                     /coded_by="XM_054072240.1:594..2666"
                     /db_xref="GeneID:104064341"
ORIGIN      
        1 mmqesateti snssmnqngm stlssqldag srdgrssgdt stevstvell hlqqqqalqa
       61 arqlllqqqt sglkspkgsd kqrplqvpvs vammtpqvit pqqmqqilqq qvlspqqlqa
      121 llqqqqavml qqqqqqqqqq qqqqqqqqqq qqqqqqqqqq qqqqqqqqqq hpgkqakeqq
      181 qqqqlaaqql vfqqqllqmq qlqqqqhlln lqrqglisip pgqsalpvqs lpqaglspae
      241 iqqlwkevtg vhsmedngik hggldlttnn sssttsstts kasppithhs ivngqssvln
      301 arrdssshee tgashtlygh gvckwpgces icedfgqflk hlnnehaldd rstaqcrvqm
      361 qvvqqleiql skererlqam mthlhmrpse pkpspkplnl vssvtmsknm letspqslpq
      421 tpttptapvt pitqgpsvit pasvpnvgai rrrhsdkyni pmsseiapny efyknadvrp
      481 pftyatlirq aimessdrql tlneiyswft rtfayfrrna atwknavrhn lslhkcfvrv
      541 envkgavwtv deveyqkrrs qkitgsptlv kniptslgyg aalnaslqaa laesslplls
      601 npglinnass gllqavhedl ngsldhidsn gnsspgcspq phihsihvke epviaededc
      661 pmslvttanh speleddrei eeeplsedle
//
LOCUS       XP_053928222             689 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein P2 isoform X5 [Cuculus canorus].
ACCESSION   XP_053928222
VERSION     XP_053928222.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072247.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..689
                     /product="forkhead box protein P2 isoform X5"
                     /calculated_mol_wt=77330
     Region          316..383
                     /region_name="FOXP-CC"
                     /note="FOXP coiled-coil domain; pfam16159"
                     /db_xref="CDD:465036"
     Region          451..>682
                     /region_name="COG5025"
                     /note="Transcription factor of the Forkhead/HNF3 family
                     [Transcription]"
                     /db_xref="CDD:227358"
     Region          477..558
                     /region_name="FH_FOXP2"
                     /note="Forkhead (FH) domain found in Forkhead box protein
                     P2 (FOXP2); cd20065"
                     /db_xref="CDD:410839"
     Site            order(482..489,491,493,497..501,505,507..509,511..512,
                     514..515,517,522..523,525..527,529..530,536,539,545..549,
                     551,554)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:410839"
     Site            order(514,517,521,524,527..528,531,556..557)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410839"
     CDS             1..689
                     /gene="FOXP2"
                     /coded_by="XM_054072247.1:583..2652"
                     /db_xref="GeneID:104064341"
ORIGIN      
        1 mlshlmeiie iieeavlasc ayqvyrrvsh qmkikalqaa rqlllqqqts glkspkgsdk
       61 qrplqvpvsv ammtpqvitp qqmqqilqqq vlspqqlqal lqqqqavmlq qqqlqefykk
      121 qqeqlhlqll qqqqqqqqqq qqqqqqqqqq qqqqqqqqqq qqqqqqqqqh pgkqakeqqq
      181 qqqlaaqqlv fqqqllqmqq lqqqqhllnl qrqglisipp gqsalpvqsl pqaglspaei
      241 qqlwkevtgv hsmedngikh ggldlttnns ssttssttsk asppithhsi vngqssvlna
      301 rrdsssheet gashtlyghg vckwpgcesi cedfgqflkh lnnehalddr staqcrvqmq
      361 vvqqleiqls kererlqamm thlhmrpsep kpspkplnlv ssvtmsknml etspqslpqt
      421 pttptapvtp itqgpsvitp asvpnvgair rrhsdkynip msseiapnye fyknadvrpp
      481 ftyatlirqa imessdrqlt lneiyswftr tfayfrrnaa twknavrhnl slhkcfvrve
      541 nvkgavwtvd eveyqkrrsq kitgsptlvk niptslgyga alnaslqaal aesslpllsn
      601 pglinnassg llqavhedln gsldhidsng nsspgcspqp hihsihvkee pviaededcp
      661 mslvttanhs peleddreie eeplsedle
//
LOCUS       XP_053928229             689 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein P2 isoform X5 [Cuculus canorus].
ACCESSION   XP_053928229
VERSION     XP_053928229.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072254.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..689
                     /product="forkhead box protein P2 isoform X5"
                     /calculated_mol_wt=77330
     Region          316..383
                     /region_name="FOXP-CC"
                     /note="FOXP coiled-coil domain; pfam16159"
                     /db_xref="CDD:465036"
     Region          451..>682
                     /region_name="COG5025"
                     /note="Transcription factor of the Forkhead/HNF3 family
                     [Transcription]"
                     /db_xref="CDD:227358"
     Region          477..558
                     /region_name="FH_FOXP2"
                     /note="Forkhead (FH) domain found in Forkhead box protein
                     P2 (FOXP2); cd20065"
                     /db_xref="CDD:410839"
     Site            order(482..489,491,493,497..501,505,507..509,511..512,
                     514..515,517,522..523,525..527,529..530,536,539,545..549,
                     551,554)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:410839"
     Site            order(514,517,521,524,527..528,531,556..557)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410839"
     CDS             1..689
                     /gene="FOXP2"
                     /coded_by="XM_054072254.1:2136..4205"
                     /db_xref="GeneID:104064341"
ORIGIN      
        1 mlshlmeiie iieeavlasc ayqvyrrvsh qmkikalqaa rqlllqqqts glkspkgsdk
       61 qrplqvpvsv ammtpqvitp qqmqqilqqq vlspqqlqal lqqqqavmlq qqqlqefykk
      121 qqeqlhlqll qqqqqqqqqq qqqqqqqqqq qqqqqqqqqq qqqqqqqqqh pgkqakeqqq
      181 qqqlaaqqlv fqqqllqmqq lqqqqhllnl qrqglisipp gqsalpvqsl pqaglspaei
      241 qqlwkevtgv hsmedngikh ggldlttnns ssttssttsk asppithhsi vngqssvlna
      301 rrdsssheet gashtlyghg vckwpgcesi cedfgqflkh lnnehalddr staqcrvqmq
      361 vvqqleiqls kererlqamm thlhmrpsep kpspkplnlv ssvtmsknml etspqslpqt
      421 pttptapvtp itqgpsvitp asvpnvgair rrhsdkynip msseiapnye fyknadvrpp
      481 ftyatlirqa imessdrqlt lneiyswftr tfayfrrnaa twknavrhnl slhkcfvrve
      541 nvkgavwtvd eveyqkrrsq kitgsptlvk niptslgyga alnaslqaal aesslpllsn
      601 pglinnassg llqavhedln gsldhidsng nsspgcspqp hihsihvkee pviaededcp
      661 mslvttanhs peleddreie eeplsedle
//
LOCUS       XP_053928238             689 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein P2 isoform X5 [Cuculus canorus].
ACCESSION   XP_053928238
VERSION     XP_053928238.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072263.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..689
                     /product="forkhead box protein P2 isoform X5"
                     /calculated_mol_wt=77330
     Region          316..383
                     /region_name="FOXP-CC"
                     /note="FOXP coiled-coil domain; pfam16159"
                     /db_xref="CDD:465036"
     Region          451..>682
                     /region_name="COG5025"
                     /note="Transcription factor of the Forkhead/HNF3 family
                     [Transcription]"
                     /db_xref="CDD:227358"
     Region          477..558
                     /region_name="FH_FOXP2"
                     /note="Forkhead (FH) domain found in Forkhead box protein
                     P2 (FOXP2); cd20065"
                     /db_xref="CDD:410839"
     Site            order(482..489,491,493,497..501,505,507..509,511..512,
                     514..515,517,522..523,525..527,529..530,536,539,545..549,
                     551,554)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:410839"
     Site            order(514,517,521,524,527..528,531,556..557)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410839"
     CDS             1..689
                     /gene="FOXP2"
                     /coded_by="XM_054072263.1:497..2566"
                     /db_xref="GeneID:104064341"
ORIGIN      
        1 mlshlmeiie iieeavlasc ayqvyrrvsh qmkikalqaa rqlllqqqts glkspkgsdk
       61 qrplqvpvsv ammtpqvitp qqmqqilqqq vlspqqlqal lqqqqavmlq qqqlqefykk
      121 qqeqlhlqll qqqqqqqqqq qqqqqqqqqq qqqqqqqqqq qqqqqqqqqh pgkqakeqqq
      181 qqqlaaqqlv fqqqllqmqq lqqqqhllnl qrqglisipp gqsalpvqsl pqaglspaei
      241 qqlwkevtgv hsmedngikh ggldlttnns ssttssttsk asppithhsi vngqssvlna
      301 rrdsssheet gashtlyghg vckwpgcesi cedfgqflkh lnnehalddr staqcrvqmq
      361 vvqqleiqls kererlqamm thlhmrpsep kpspkplnlv ssvtmsknml etspqslpqt
      421 pttptapvtp itqgpsvitp asvpnvgair rrhsdkynip msseiapnye fyknadvrpp
      481 ftyatlirqa imessdrqlt lneiyswftr tfayfrrnaa twknavrhnl slhkcfvrve
      541 nvkgavwtvd eveyqkrrsq kitgsptlvk niptslgyga alnaslqaal aesslpllsn
      601 pglinnassg llqavhedln gsldhidsng nsspgcspqp hihsihvkee pviaededcp
      661 mslvttanhs peleddreie eeplsedle
//
LOCUS       XP_053928241             689 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein P2 isoform X5 [Cuculus canorus].
ACCESSION   XP_053928241
VERSION     XP_053928241.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072266.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..689
                     /product="forkhead box protein P2 isoform X5"
                     /calculated_mol_wt=77330
     Region          316..383
                     /region_name="FOXP-CC"
                     /note="FOXP coiled-coil domain; pfam16159"
                     /db_xref="CDD:465036"
     Region          451..>682
                     /region_name="COG5025"
                     /note="Transcription factor of the Forkhead/HNF3 family
                     [Transcription]"
                     /db_xref="CDD:227358"
     Region          477..558
                     /region_name="FH_FOXP2"
                     /note="Forkhead (FH) domain found in Forkhead box protein
                     P2 (FOXP2); cd20065"
                     /db_xref="CDD:410839"
     Site            order(482..489,491,493,497..501,505,507..509,511..512,
                     514..515,517,522..523,525..527,529..530,536,539,545..549,
                     551,554)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:410839"
     Site            order(514,517,521,524,527..528,531,556..557)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410839"
     CDS             1..689
                     /gene="FOXP2"
                     /coded_by="XM_054072266.1:2050..4119"
                     /db_xref="GeneID:104064341"
ORIGIN      
        1 mlshlmeiie iieeavlasc ayqvyrrvsh qmkikalqaa rqlllqqqts glkspkgsdk
       61 qrplqvpvsv ammtpqvitp qqmqqilqqq vlspqqlqal lqqqqavmlq qqqlqefykk
      121 qqeqlhlqll qqqqqqqqqq qqqqqqqqqq qqqqqqqqqq qqqqqqqqqh pgkqakeqqq
      181 qqqlaaqqlv fqqqllqmqq lqqqqhllnl qrqglisipp gqsalpvqsl pqaglspaei
      241 qqlwkevtgv hsmedngikh ggldlttnns ssttssttsk asppithhsi vngqssvlna
      301 rrdsssheet gashtlyghg vckwpgcesi cedfgqflkh lnnehalddr staqcrvqmq
      361 vvqqleiqls kererlqamm thlhmrpsep kpspkplnlv ssvtmsknml etspqslpqt
      421 pttptapvtp itqgpsvitp asvpnvgair rrhsdkynip msseiapnye fyknadvrpp
      481 ftyatlirqa imessdrqlt lneiyswftr tfayfrrnaa twknavrhnl slhkcfvrve
      541 nvkgavwtvd eveyqkrrsq kitgsptlvk niptslgyga alnaslqaal aesslpllsn
      601 pglinnassg llqavhedln gsldhidsng nsspgcspqp hihsihvkee pviaededcp
      661 mslvttanhs peleddreie eeplsedle
//
LOCUS       XP_053928248             618 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein P2 isoform X6 [Cuculus canorus].
ACCESSION   XP_053928248
VERSION     XP_053928248.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072273.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..618
                     /product="forkhead box protein P2 isoform X6"
                     /calculated_mol_wt=69390
     Region          245..312
                     /region_name="FOXP-CC"
                     /note="FOXP coiled-coil domain; pfam16159"
                     /db_xref="CDD:465036"
     Region          380..>611
                     /region_name="COG5025"
                     /note="Transcription factor of the Forkhead/HNF3 family
                     [Transcription]"
                     /db_xref="CDD:227358"
     Region          406..487
                     /region_name="FH_FOXP2"
                     /note="Forkhead (FH) domain found in Forkhead box protein
                     P2 (FOXP2); cd20065"
                     /db_xref="CDD:410839"
     Site            order(411..418,420,422,426..430,434,436..438,440..441,
                     443..444,446,451..452,454..456,458..459,465,468,474..478,
                     480,483)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:410839"
     Site            order(443,446,450,453,456..457,460,485..486)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410839"
     CDS             1..618
                     /gene="FOXP2"
                     /coded_by="XM_054072273.1:170..2026"
                     /db_xref="GeneID:104064341"
ORIGIN      
        1 mmtpqvitpq qmqqilqqqv lspqqlqall qqqqavmlqq qqlqefykkq qeqlhlqllq
       61 qqqqqqqqqq qqqqqqqqqq qqqqqqqqqq qqqqqqqqhp gkqakeqqqq qqlaaqqlvf
      121 qqqllqmqql qqqqhllnlq rqglisippg qsalpvqslp qaglspaeiq qlwkevtgvh
      181 smedngikhg gldlttnnss sttssttska sppithhsiv ngqssvlnar rdsssheetg
      241 ashtlyghgv ckwpgcesic edfgqflkhl nnehalddrs taqcrvqmqv vqqleiqlsk
      301 ererlqammt hlhmrpsepk pspkplnlvs svtmsknmle tspqslpqtp ttptapvtpi
      361 tqgpsvitpa svpnvgairr rhsdkynipm sseiapnyef yknadvrppf tyatlirqai
      421 messdrqltl neiyswftrt fayfrrnaat wknavrhnls lhkcfvrven vkgavwtvde
      481 veyqkrrsqk itgsptlvkn iptslgygaa lnaslqaala esslpllsnp glinnassgl
      541 lqavhedlng sldhidsngn sspgcspqph ihsihvkeep viaededcpm slvttanhsp
      601 eleddreiee eplsedle
//
LOCUS       XP_053928257             727 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein P2 isoform X7 [Cuculus canorus].
ACCESSION   XP_053928257
VERSION     XP_053928257.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072282.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..727
                     /product="forkhead box protein P2 isoform X7"
                     /calculated_mol_wt=81134
     Region          354..421
                     /region_name="FOXP-CC"
                     /note="FOXP coiled-coil domain; pfam16159"
                     /db_xref="CDD:465036"
     Region          489..>720
                     /region_name="COG5025"
                     /note="Transcription factor of the Forkhead/HNF3 family
                     [Transcription]"
                     /db_xref="CDD:227358"
     Region          515..596
                     /region_name="FH_FOXP2"
                     /note="Forkhead (FH) domain found in Forkhead box protein
                     P2 (FOXP2); cd20065"
                     /db_xref="CDD:410839"
     Site            order(520..527,529,531,535..539,543,545..547,549..550,
                     552..553,555,560..561,563..565,567..568,574,577,583..587,
                     589,592)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:410839"
     Site            order(552,555,559,562,565..566,569,594..595)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410839"
     CDS             1..727
                     /gene="FOXP2"
                     /coded_by="XM_054072282.1:594..2777"
                     /db_xref="GeneID:104064341"
ORIGIN      
        1 mmqesateti snssmnqngm stlssqldag srdgrssgdt stevstvell hlqqqqalqa
       61 arqlllqqqt sglkspkgsd kqrplqvpvs vammtpqvit pqqmqqilqq qvlspqqlqa
      121 llqqqqavml qqdilesale nfrtaleknq qlqefykkqq eqlhlqllqq qqqqqqqqqq
      181 qqqqqqqqqq qqqqqqqqqq qqqqqqqhpg kqakeqqqqq qlaaqqlvfq qqllqmqqlq
      241 qqqhllnlqr qglisippgq salpvqslpq aglspaeiqq lwkevtgvhs medngikhgg
      301 ldlttnnsss ttssttskas ppithhsivn gqssvlnarr dsssheetga shtlyghgvc
      361 kwpgcesice dfgqflkhln nehalddrst aqcrvqmqvv qqleiqlske rerlqammth
      421 lhmrpsepkp spkplnlvss vtmsknmlet spqslpqtpt tptapvtpit qgpsvitpas
      481 vpnvgairrr hsdkynipms seiapnyefy knadvrppft yatlirqaim essdrqltln
      541 eiyswftrtf ayfrrnaatw knavrhnlsl hkcfvrvenv kgavwtvdev eyqkrrsqki
      601 tgsptlvkni ptslgygaal naslqaalae sslpllsnpg linnassgll qavhedlngs
      661 ldhidsngns spgcspqphi hsihvkeepv iaededcpms lvttanhspe leddreieee
      721 plsedle
//
LOCUS       XP_053928265            1058 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger and BTB domain-containing protein 21 [Cuculus canorus].
ACCESSION   XP_053928265
VERSION     XP_053928265.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072290.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1058
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1058
                     /product="zinc finger and BTB domain-containing protein
                     21"
                     /calculated_mol_wt=118697
     Region          12..123
                     /region_name="BTB_POZ_ZBTB21_ZNF295"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 21 (ZBTB21); cd18209"
                     /db_xref="CDD:349518"
     Region          539..>592
                     /region_name="SUF4-like"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; cd20908"
                     /db_xref="CDD:411020"
     Region          542..563
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          542..563
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(547,553,560,562,570,577)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411020"
     Region          571..592
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          664..686
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          666..686
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          718..742
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          740..767
                     /region_name="zf_C2H2_6"
                     /note="Zinc Finger domain; pfam18450"
                     /db_xref="CDD:408245"
     Region          905..925
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          933..954
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..1058
                     /gene="ZBTB21"
                     /coded_by="XM_054072290.1:131..3307"
                     /db_xref="GeneID:104059233"
ORIGIN      
        1 megllhyinp ahaisllsal neerlkgqlc dvvlivgdqk frahknvlaa sseyfqtlft
       61 nkenesqsvf qldfcepdaf dnvlnyiyss slfiekgsla avqelgyslg isfltnivsk
      121 spqapfptcp ikkilyqded essaqkrsvi vcqnrveaqa kstdqtqhdl shtskptpsa
      181 avktssrpqv tkptetlhsl slterrwlke spvsytkvhe tlgtvedqtr gglvkrntvv
      241 pqmplaekei annepgssgq llrgkaaevs lkrlrppvls lrgasestfl lreagkgdgp
      301 vedrnllyys klglvipssg sgpenqsidr sgplvksllr rslsmdsqvp iyspsvdlkp
      361 sqvssssslg tndsqktcnv vsqksslkes sdklvldekp qvihphrlrs fsasqstdre
      421 vaspltevri ktepssplsd paeiirvtvg dasaltnkdf sfkteddhke psrppakrrf
      481 qadrrlpfkk lkadeqgspg sednfeesss pthldadfpd sdvskdeyse meearpnkkf
      541 kckhclkifr staglhrhvn myhnpekpya cdichkrfht nfkvwthcqt qhgivknpsp
      601 assshavlde kfqrklidiv rereikkali vklrrgkqgf qgqsasqaqq vikrnlrsrt
      661 kgayicsycg kayrflsqfk qhikmhpgek piggnkapkq kdhihiespa enkevyqcrl
      721 cnaklsslie qgnherlcrn atvcpycslr fsspelkheh eskceykklt clecmrtfks
      781 sfsiwrhqve vhnqntmaps enfslpildh ngeitsssrl ppqsesskmn nfvaakedgv
      841 fsdsseqinf dsedssclpe dlsvskqfki qikeepaddi edevtetsre pkevvsnkda
      901 glwpcekcgk iftvrkqler hqellcsvkp fichvcnkaf rtnfrlwshf qshmsqaaee
      961 stnkepetcp panspspppl ppppplpkiq plepdsptgl sesstttekl fvpqesdtlf
     1021 yhapplsait fkrqymcklc hrtfktafsl wsheqthn
//
LOCUS       XP_053928298            1108 aa            linear   VRT 09-MAR-2023
DEFINITION  caspase recruitment domain-containing protein 10 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053928298
VERSION     XP_053928298.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072323.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1108
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1108
                     /product="caspase recruitment domain-containing protein 10
                     isoform X1"
                     /calculated_mol_wt=126754
     Region          103..188
                     /region_name="DD"
                     /note="Death Domain Superfamily of protein-protein
                     interaction domains; cl14633"
                     /db_xref="CDD:472698"
     Region          <256..>527
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          684..756
                     /region_name="PDZ_canonical"
                     /note="canonical PDZ domain; cl49608"
                     /db_xref="CDD:483948"
     Site            order(697..703,708,711,737,741,744..745)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467218"
     Region          788..852
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(796,798,802,806,827,847,849..850)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212961"
     Region          <995..1065
                     /region_name="NK"
                     /note="Nucleoside/nucleotide kinase (NK) is a protein
                     superfamily consisting of multiple families of enzymes
                     that share structural similarity and are functionally
                     related to the catalysis of the reversible phosphate group
                     transfer from nucleoside triphosphates...; cl17190"
                     /db_xref="CDD:450170"
     CDS             1..1108
                     /gene="CARD10"
                     /coded_by="XM_054072323.1:72..3398"
                     /db_xref="GeneID:104065907"
ORIGIN      
        1 msswlelpka asslllllsr lpstadvlqk wlpspgaerg crkridhipl vefaeglwrv
       61 lhsrgagigt qslgvcqspg galedaslqa ctlseqeeee dtiwekiesa rhqltrslnp
      121 akltpylrqc rvideqdeee vlnscrfpck snqtgylmdi lrrrgkrgye afleslefyy
      181 pehytrltgr epaqrcsmil deegpegltq flmmevkkvr aqrqehllke hqlqvknqal
      241 eqeqtrlqqq lqellkvqer yqrlreewds nsvellrlkd enymmamrya qlceeknmav
      301 lrsrdlqlvv dqlkckvtsl eeecsllrkq asvppqreae erghsdamse lwaenqrlta
      361 slqelqgmlq tpgkgpvpgs eqimldileh dwkeaqddrq dlcqklnslq nelqwaeelr
      421 dkylqevedl qlkyrtlqkd cdlykhrmnt vllqleeiek erdqaiqsrd gvqlqysqsl
      481 iekdqyrkrv rtleeerdel lsklsqaegl nstlevqlqr cqgsrsqskm csssyslcsn
      541 lsstwslvdn ctsfttglvd algaipfpgd savqsmdvtp dsekdinrls tfpfppcigs
      601 ilrrqredrc mpykslscgs fssiedatgs gfasaslgal sssssstcar vkseiclstl
      661 psrkeitrrs lvvqltsmgh pqnlspqekr lredisilgg nstgiyvhwv kpgsrvedag
      721 lregcrliel rvpsmkeevl slenctreva ylsllhwdep sslvfqmdpe gyqplreale
      781 egkkfsgdsf yvrtnlslle lsdpyalcvk creilhitdt mhkgrlewyc srvdpltmrd
      841 ldkgtvpnys rahqllkiqe kgqmpgqqrg hrnnlkkral dqlrmvkskp qrspeqppqq
      901 lwldpcsdpd kslkpyslvr pvvvktprpv vlspncivpr lvrnlldlpt srldfhvcpa
      961 eklaegdpnt thgqehlvsr salqdrrerk qirmireame knkhcllelg vqsvrdliks
     1021 kiypivihve vteknvrglr sllekpgqrd sevlkvcrnt eqalhalpcs warvephaws
     1081 haeelpkvvr gcifqeqtrp lwieegdd
//
LOCUS       XP_053928307            1105 aa            linear   VRT 09-MAR-2023
DEFINITION  caspase recruitment domain-containing protein 10 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053928307
VERSION     XP_053928307.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072332.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1105
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1105
                     /product="caspase recruitment domain-containing protein 10
                     isoform X2"
                     /calculated_mol_wt=126350
     Region          103..188
                     /region_name="DD"
                     /note="Death Domain Superfamily of protein-protein
                     interaction domains; cl14633"
                     /db_xref="CDD:472698"
     Region          <256..>524
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          681..753
                     /region_name="PDZ_canonical"
                     /note="canonical PDZ domain; cl49608"
                     /db_xref="CDD:483948"
     Site            order(694..700,705,708,734,738,741..742)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467218"
     Region          785..849
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(793,795,799,803,824,844,846..847)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212961"
     Region          <992..1062
                     /region_name="NK"
                     /note="Nucleoside/nucleotide kinase (NK) is a protein
                     superfamily consisting of multiple families of enzymes
                     that share structural similarity and are functionally
                     related to the catalysis of the reversible phosphate group
                     transfer from nucleoside triphosphates...; cl17190"
                     /db_xref="CDD:450170"
     CDS             1..1105
                     /gene="CARD10"
                     /coded_by="XM_054072332.1:72..3389"
                     /db_xref="GeneID:104065907"
ORIGIN      
        1 msswlelpka asslllllsr lpstadvlqk wlpspgaerg crkridhipl vefaeglwrv
       61 lhsrgagigt qslgvcqspg galedaslqa ctlseqeeee dtiwekiesa rhqltrslnp
      121 akltpylrqc rvideqdeee vlnscrfpck snqtgylmdi lrrrgkrgye afleslefyy
      181 pehytrltgr epaqrcsmil deegpegltq flmmevkkvr aqrqehllke hqlqvknqal
      241 eqeqtrlqqq lqellkvqer yqrlreewds nsvellrlkd enymmamrya qlceeknmav
      301 lrsrdlqlvv dqlkckvtsl eeecsllrkq asvppqreae erghsdamse lwaenqrlta
      361 slqelqgmlq tpgkgpvpgs eqimldileh dwkeaqddrq dlcqklnslq nelqwaeelr
      421 dkevedlqlk yrtlqkdcdl ykhrmntvll qleeiekerd qaiqsrdgvq lqysqsliek
      481 dqyrkrvrtl eeerdellsk lsqaeglnst levqlqrcqg srsqskmcss syslcsnlss
      541 twslvdncts fttglvdalg aipfpgdsav qsmdvtpdse kdinrlstfp fppcigsilr
      601 rqredrcmpy kslscgsfss iedatgsgfa saslgalsss ssstcarvks eiclstlpsr
      661 keitrrslvv qltsmghpqn lspqekrlre disilggnst giyvhwvkpg srvedaglre
      721 gcrlielrvp smkeevlsle nctrevayls llhwdepssl vfqmdpegyq plrealeegk
      781 kfsgdsfyvr tnlsllelsd pyalcvkcre ilhitdtmhk grlewycsrv dpltmrdldk
      841 gtvpnysrah qllkiqekgq mpgqqrghrn nlkkraldql rmvkskpqrs peqppqqlwl
      901 dpcsdpdksl kpyslvrpvv vktprpvvls pncivprlvr nlldlptsrl dfhvcpaekl
      961 aegdpntthg qehlvsrsal qdrrerkqir mireameknk hcllelgvqs vrdlikskiy
     1021 pivihvevte knvrglrsll ekpgqrdsev lkvcrnteqa lhalpcswar vephawshae
     1081 elpkvvrgci fqeqtrplwi eegdd
//
LOCUS       XP_053928313            1048 aa            linear   VRT 09-MAR-2023
DEFINITION  caspase recruitment domain-containing protein 10 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053928313
VERSION     XP_053928313.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072338.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1048
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1048
                     /product="caspase recruitment domain-containing protein 10
                     isoform X3"
                     /calculated_mol_wt=120449
     Region          43..128
                     /region_name="DD"
                     /note="Death Domain Superfamily of protein-protein
                     interaction domains; cl14633"
                     /db_xref="CDD:472698"
     Region          <196..>467
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          624..696
                     /region_name="PDZ_canonical"
                     /note="canonical PDZ domain; cl49608"
                     /db_xref="CDD:483948"
     Site            order(637..643,648,651,677,681,684..685)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467218"
     Region          728..792
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(736,738,742,746,767,787,789..790)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212961"
     Region          <935..1005
                     /region_name="NK"
                     /note="Nucleoside/nucleotide kinase (NK) is a protein
                     superfamily consisting of multiple families of enzymes
                     that share structural similarity and are functionally
                     related to the catalysis of the reversible phosphate group
                     transfer from nucleoside triphosphates...; cl17190"
                     /db_xref="CDD:450170"
     CDS             1..1048
                     /gene="CARD10"
                     /coded_by="XM_054072338.1:1833..4979"
                     /db_xref="GeneID:104065907"
ORIGIN      
        1 mqeettpcsl ygellswepe galedaslqa ctlseqeeee dtiwekiesa rhqltrslnp
       61 akltpylrqc rvideqdeee vlnscrfpck snqtgylmdi lrrrgkrgye afleslefyy
      121 pehytrltgr epaqrcsmil deegpegltq flmmevkkvr aqrqehllke hqlqvknqal
      181 eqeqtrlqqq lqellkvqer yqrlreewds nsvellrlkd enymmamrya qlceeknmav
      241 lrsrdlqlvv dqlkckvtsl eeecsllrkq asvppqreae erghsdamse lwaenqrlta
      301 slqelqgmlq tpgkgpvpgs eqimldileh dwkeaqddrq dlcqklnslq nelqwaeelr
      361 dkylqevedl qlkyrtlqkd cdlykhrmnt vllqleeiek erdqaiqsrd gvqlqysqsl
      421 iekdqyrkrv rtleeerdel lsklsqaegl nstlevqlqr cqgsrsqskm csssyslcsn
      481 lsstwslvdn ctsfttglvd algaipfpgd savqsmdvtp dsekdinrls tfpfppcigs
      541 ilrrqredrc mpykslscgs fssiedatgs gfasaslgal sssssstcar vkseiclstl
      601 psrkeitrrs lvvqltsmgh pqnlspqekr lredisilgg nstgiyvhwv kpgsrvedag
      661 lregcrliel rvpsmkeevl slenctreva ylsllhwdep sslvfqmdpe gyqplreale
      721 egkkfsgdsf yvrtnlslle lsdpyalcvk creilhitdt mhkgrlewyc srvdpltmrd
      781 ldkgtvpnys rahqllkiqe kgqmpgqqrg hrnnlkkral dqlrmvkskp qrspeqppqq
      841 lwldpcsdpd kslkpyslvr pvvvktprpv vlspncivpr lvrnlldlpt srldfhvcpa
      901 eklaegdpnt thgqehlvsr salqdrrerk qirmireame knkhcllelg vqsvrdliks
      961 kiypivihve vteknvrglr sllekpgqrd sevlkvcrnt eqalhalpcs warvephaws
     1021 haeelpkvvr gcifqeqtrp lwieegdd
//
LOCUS       XP_009566734            1029 aa            linear   VRT 09-MAR-2023
DEFINITION  caspase recruitment domain-containing protein 10 isoform X4
            [Cuculus canorus].
ACCESSION   XP_009566734
VERSION     XP_009566734.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568439.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566734.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1029
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1029
                     /product="caspase recruitment domain-containing protein 10
                     isoform X4"
                     /calculated_mol_wt=118270
     Region          24..109
                     /region_name="DD"
                     /note="Death Domain Superfamily of protein-protein
                     interaction domains; cl14633"
                     /db_xref="CDD:472698"
     Region          <177..>448
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          605..677
                     /region_name="PDZ_canonical"
                     /note="canonical PDZ domain; cl49608"
                     /db_xref="CDD:483948"
     Site            order(618..624,629,632,658,662,665..666)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467218"
     Region          709..773
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(717,719,723,727,748,768,770..771)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212961"
     Region          <916..986
                     /region_name="NK"
                     /note="Nucleoside/nucleotide kinase (NK) is a protein
                     superfamily consisting of multiple families of enzymes
                     that share structural similarity and are functionally
                     related to the catalysis of the reversible phosphate group
                     transfer from nucleoside triphosphates...; cl17190"
                     /db_xref="CDD:450170"
     CDS             1..1029
                     /gene="CARD10"
                     /coded_by="XM_009568439.2:51..3140"
                     /db_xref="GeneID:104065907"
ORIGIN      
        1 maaledaslq actlseqeee edtiwekies arhqltrsln pakltpylrq crvideqdee
       61 evlnscrfpc ksnqtgylmd ilrrrgkrgy eafleslefy ypehytrltg repaqrcsmi
      121 ldeegpeglt qflmmevkkv raqrqehllk ehqlqvknqa leqeqtrlqq qlqellkvqe
      181 ryqrlreewd snsvellrlk denymmamry aqlceeknma vlrsrdlqlv vdqlkckvts
      241 leeecsllrk qasvppqrea eerghsdams elwaenqrlt aslqelqgml qtpgkgpvpg
      301 seqimldile hdwkeaqddr qdlcqklnsl qnelqwaeel rdkylqeved lqlkyrtlqk
      361 dcdlykhrmn tvllqleeie kerdqaiqsr dgvqlqysqs liekdqyrkr vrtleeerde
      421 llsklsqaeg lnstlevqlq rcqgsrsqsk mcsssyslcs nlsstwslvd nctsfttglv
      481 dalgaipfpg dsavqsmdvt pdsekdinrl stfpfppcig silrrqredr cmpykslscg
      541 sfssiedatg sgfasaslga lsssssstca rvkseiclst lpsrkeitrr slvvqltsmg
      601 hpqnlspqek rlredisilg gnstgiyvhw vkpgsrveda glregcrlie lrvpsmkeev
      661 lslenctrev aylsllhwde psslvfqmdp egyqplreal eegkkfsgds fyvrtnlsll
      721 elsdpyalcv kcreilhitd tmhkgrlewy csrvdpltmr dldkgtvpny srahqllkiq
      781 ekgqmpgqqr ghrnnlkkra ldqlrmvksk pqrspeqppq qlwldpcsdp dkslkpyslv
      841 rpvvvktprp vvlspncivp rlvrnlldlp tsrldfhvcp aeklaegdpn tthgqehlvs
      901 rsalqdrrer kqirmiream eknkhcllel gvqsvrdlik skiypivihv evteknvrgl
      961 rsllekpgqr dsevlkvcrn teqalhalpc swarvephaw shaeelpkvv rgcifqeqtr
     1021 plwieegdd
//
LOCUS       XP_053928323             951 aa            linear   VRT 09-MAR-2023
DEFINITION  caspase recruitment domain-containing protein 10 isoform X5
            [Cuculus canorus].
ACCESSION   XP_053928323
VERSION     XP_053928323.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072348.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..951
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..951
                     /product="caspase recruitment domain-containing protein 10
                     isoform X5"
                     /calculated_mol_wt=109284
     Region          <1..31
                     /region_name="DD"
                     /note="Death Domain Superfamily of protein-protein
                     interaction domains; cl14633"
                     /db_xref="CDD:472698"
     Region          <99..>370
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          527..599
                     /region_name="PDZ_canonical"
                     /note="canonical PDZ domain; cl49608"
                     /db_xref="CDD:483948"
     Site            order(540..546,551,554,580,584,587..588)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467218"
     Region          631..695
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(639,641,645,649,670,690,692..693)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212961"
     Region          <838..908
                     /region_name="NK"
                     /note="Nucleoside/nucleotide kinase (NK) is a protein
                     superfamily consisting of multiple families of enzymes
                     that share structural similarity and are functionally
                     related to the catalysis of the reversible phosphate group
                     transfer from nucleoside triphosphates...; cl17190"
                     /db_xref="CDD:450170"
     CDS             1..951
                     /gene="CARD10"
                     /coded_by="XM_054072348.1:736..3591"
                     /db_xref="GeneID:104065907"
ORIGIN      
        1 mdilrrrgkr gyeaflesle fyypehytrl tgrepaqrcs mildeegpeg ltqflmmevk
       61 kvraqrqehl lkehqlqvkn qaleqeqtrl qqqlqellkv qeryqrlree wdsnsvellr
      121 lkdenymmam ryaqlceekn mavlrsrdlq lvvdqlkckv tsleeecsll rkqasvppqr
      181 eaeerghsda mselwaenqr ltaslqelqg mlqtpgkgpv pgseqimldi lehdwkeaqd
      241 drqdlcqkln slqnelqwae elrdkylqev edlqlkyrtl qkdcdlykhr mntvllqlee
      301 iekerdqaiq srdgvqlqys qsliekdqyr krvrtleeer dellsklsqa eglnstlevq
      361 lqrcqgsrsq skmcsssysl csnlsstwsl vdnctsfttg lvdalgaipf pgdsavqsmd
      421 vtpdsekdin rlstfpfppc igsilrrqre drcmpyksls cgsfssieda tgsgfasasl
      481 galsssssst carvkseicl stlpsrkeit rrslvvqlts mghpqnlspq ekrlredisi
      541 lggnstgiyv hwvkpgsrve daglregcrl ielrvpsmke evlslenctr evaylsllhw
      601 depsslvfqm dpegyqplre aleegkkfsg dsfyvrtnls llelsdpyal cvkcreilhi
      661 tdtmhkgrle wycsrvdplt mrdldkgtvp nysrahqllk iqekgqmpgq qrghrnnlkk
      721 raldqlrmvk skpqrspeqp pqqlwldpcs dpdkslkpys lvrpvvvktp rpvvlspnci
      781 vprlvrnlld lptsrldfhv cpaeklaegd pntthgqehl vsrsalqdrr erkqirmire
      841 ameknkhcll elgvqsvrdl ikskiypivi hvevteknvr glrsllekpg qrdsevlkvc
      901 rnteqalhal pcswarveph awshaeelpk vvrgcifqeq trplwieegd d
//
LOCUS       XP_053928324             951 aa            linear   VRT 09-MAR-2023
DEFINITION  caspase recruitment domain-containing protein 10 isoform X5
            [Cuculus canorus].
ACCESSION   XP_053928324
VERSION     XP_053928324.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072349.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..951
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..951
                     /product="caspase recruitment domain-containing protein 10
                     isoform X5"
                     /calculated_mol_wt=109284
     Region          <1..31
                     /region_name="DD"
                     /note="Death Domain Superfamily of protein-protein
                     interaction domains; cl14633"
                     /db_xref="CDD:472698"
     Region          <99..>370
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          527..599
                     /region_name="PDZ_canonical"
                     /note="canonical PDZ domain; cl49608"
                     /db_xref="CDD:483948"
     Site            order(540..546,551,554,580,584,587..588)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467218"
     Region          631..695
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(639,641,645,649,670,690,692..693)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212961"
     Region          <838..908
                     /region_name="NK"
                     /note="Nucleoside/nucleotide kinase (NK) is a protein
                     superfamily consisting of multiple families of enzymes
                     that share structural similarity and are functionally
                     related to the catalysis of the reversible phosphate group
                     transfer from nucleoside triphosphates...; cl17190"
                     /db_xref="CDD:450170"
     CDS             1..951
                     /gene="CARD10"
                     /coded_by="XM_054072349.1:357..3212"
                     /db_xref="GeneID:104065907"
ORIGIN      
        1 mdilrrrgkr gyeaflesle fyypehytrl tgrepaqrcs mildeegpeg ltqflmmevk
       61 kvraqrqehl lkehqlqvkn qaleqeqtrl qqqlqellkv qeryqrlree wdsnsvellr
      121 lkdenymmam ryaqlceekn mavlrsrdlq lvvdqlkckv tsleeecsll rkqasvppqr
      181 eaeerghsda mselwaenqr ltaslqelqg mlqtpgkgpv pgseqimldi lehdwkeaqd
      241 drqdlcqkln slqnelqwae elrdkylqev edlqlkyrtl qkdcdlykhr mntvllqlee
      301 iekerdqaiq srdgvqlqys qsliekdqyr krvrtleeer dellsklsqa eglnstlevq
      361 lqrcqgsrsq skmcsssysl csnlsstwsl vdnctsfttg lvdalgaipf pgdsavqsmd
      421 vtpdsekdin rlstfpfppc igsilrrqre drcmpyksls cgsfssieda tgsgfasasl
      481 galsssssst carvkseicl stlpsrkeit rrslvvqlts mghpqnlspq ekrlredisi
      541 lggnstgiyv hwvkpgsrve daglregcrl ielrvpsmke evlslenctr evaylsllhw
      601 depsslvfqm dpegyqplre aleegkkfsg dsfyvrtnls llelsdpyal cvkcreilhi
      661 tdtmhkgrle wycsrvdplt mrdldkgtvp nysrahqllk iqekgqmpgq qrghrnnlkk
      721 raldqlrmvk skpqrspeqp pqqlwldpcs dpdkslkpys lvrpvvvktp rpvvlspnci
      781 vprlvrnlld lptsrldfhv cpaeklaegd pntthgqehl vsrsalqdrr erkqirmire
      841 ameknkhcll elgvqsvrdl ikskiypivi hvevteknvr glrsllekpg qrdsevlkvc
      901 rnteqalhal pcswarveph awshaeelpk vvrgcifqeq trplwieegd d
//
LOCUS       XP_053928325             951 aa            linear   VRT 09-MAR-2023
DEFINITION  caspase recruitment domain-containing protein 10 isoform X5
            [Cuculus canorus].
ACCESSION   XP_053928325
VERSION     XP_053928325.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072350.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..951
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..951
                     /product="caspase recruitment domain-containing protein 10
                     isoform X5"
                     /calculated_mol_wt=109284
     Region          <1..31
                     /region_name="DD"
                     /note="Death Domain Superfamily of protein-protein
                     interaction domains; cl14633"
                     /db_xref="CDD:472698"
     Region          <99..>370
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          527..599
                     /region_name="PDZ_canonical"
                     /note="canonical PDZ domain; cl49608"
                     /db_xref="CDD:483948"
     Site            order(540..546,551,554,580,584,587..588)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467218"
     Region          631..695
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(639,641,645,649,670,690,692..693)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212961"
     Region          <838..908
                     /region_name="NK"
                     /note="Nucleoside/nucleotide kinase (NK) is a protein
                     superfamily consisting of multiple families of enzymes
                     that share structural similarity and are functionally
                     related to the catalysis of the reversible phosphate group
                     transfer from nucleoside triphosphates...; cl17190"
                     /db_xref="CDD:450170"
     CDS             1..951
                     /gene="CARD10"
                     /coded_by="XM_054072350.1:257..3112"
                     /db_xref="GeneID:104065907"
ORIGIN      
        1 mdilrrrgkr gyeaflesle fyypehytrl tgrepaqrcs mildeegpeg ltqflmmevk
       61 kvraqrqehl lkehqlqvkn qaleqeqtrl qqqlqellkv qeryqrlree wdsnsvellr
      121 lkdenymmam ryaqlceekn mavlrsrdlq lvvdqlkckv tsleeecsll rkqasvppqr
      181 eaeerghsda mselwaenqr ltaslqelqg mlqtpgkgpv pgseqimldi lehdwkeaqd
      241 drqdlcqkln slqnelqwae elrdkylqev edlqlkyrtl qkdcdlykhr mntvllqlee
      301 iekerdqaiq srdgvqlqys qsliekdqyr krvrtleeer dellsklsqa eglnstlevq
      361 lqrcqgsrsq skmcsssysl csnlsstwsl vdnctsfttg lvdalgaipf pgdsavqsmd
      421 vtpdsekdin rlstfpfppc igsilrrqre drcmpyksls cgsfssieda tgsgfasasl
      481 galsssssst carvkseicl stlpsrkeit rrslvvqlts mghpqnlspq ekrlredisi
      541 lggnstgiyv hwvkpgsrve daglregcrl ielrvpsmke evlslenctr evaylsllhw
      601 depsslvfqm dpegyqplre aleegkkfsg dsfyvrtnls llelsdpyal cvkcreilhi
      661 tdtmhkgrle wycsrvdplt mrdldkgtvp nysrahqllk iqekgqmpgq qrghrnnlkk
      721 raldqlrmvk skpqrspeqp pqqlwldpcs dpdkslkpys lvrpvvvktp rpvvlspnci
      781 vprlvrnlld lptsrldfhv cpaeklaegd pntthgqehl vsrsalqdrr erkqirmire
      841 ameknkhcll elgvqsvrdl ikskiypivi hvevteknvr glrsllekpg qrdsevlkvc
      901 rnteqalhal pcswarveph awshaeelpk vvrgcifqeq trplwieegd d
//
LOCUS       XP_053928326             409 aa            linear   VRT 09-MAR-2023
DEFINITION  cdc42 effector protein 1 [Cuculus canorus].
ACCESSION   XP_053928326
VERSION     XP_053928326.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072351.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..409
                     /product="cdc42 effector protein 1"
                     /calculated_mol_wt=43651
     Region          29..>56
                     /region_name="CRIB"
                     /note="PAK (p21 activated kinase) Binding Domain (PBD),
                     binds Cdc42p- and/or Rho-like small GTPases; also known as
                     the Cdc42/Rac interactive binding (CRIB) motif; has been
                     shown to inhibit transcriptional activation and cell
                     transformation mediated by the...; cl00113"
                     /db_xref="CDD:412170"
     Region          106..203
                     /region_name="BORG_CEP"
                     /note="Cdc42 effector; pfam14957"
                     /db_xref="CDD:464403"
     CDS             1..409
                     /gene="CDC42EP1"
                     /coded_by="XM_054072351.1:744..1973"
                     /db_xref="GeneID:104065869"
ORIGIN      
        1 mslgklpvls wvsgshgkrr lkseltpdmi spplgdfrht mhvgrggdvf gdtsflsnhg
       61 gaetakannf ftrtlrhvrr tplksrgsgc qakaspappp ispiiknavs lpqlnegmyd
      121 ggsgsqslts rfsfksasns fskthqvygl esgfctiprv prlekaqena ftgedelnrs
      181 dsllsfrldl gpslmsellq vmsfsetngn evgedgadlp naegtkdevl pasgaahged
      241 katlsywdrs gqtslsgass lpglsvhang eahaiegagk dpawasgpga vprgtpwqgh
      301 wndcsieage fdraaqvlar hyggtstprs sekvegprqa rtqtlwesps ssswrsqvtg
      361 eslspeatwn qgeeeaelss lqegyvgarg mhsnsfeyad eeeddevkv
//
LOCUS       XP_053928327             409 aa            linear   VRT 09-MAR-2023
DEFINITION  cdc42 effector protein 1 [Cuculus canorus].
ACCESSION   XP_053928327
VERSION     XP_053928327.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072352.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..409
                     /product="cdc42 effector protein 1"
                     /calculated_mol_wt=43651
     Region          29..>56
                     /region_name="CRIB"
                     /note="PAK (p21 activated kinase) Binding Domain (PBD),
                     binds Cdc42p- and/or Rho-like small GTPases; also known as
                     the Cdc42/Rac interactive binding (CRIB) motif; has been
                     shown to inhibit transcriptional activation and cell
                     transformation mediated by the...; cl00113"
                     /db_xref="CDD:412170"
     Region          106..203
                     /region_name="BORG_CEP"
                     /note="Cdc42 effector; pfam14957"
                     /db_xref="CDD:464403"
     CDS             1..409
                     /gene="CDC42EP1"
                     /coded_by="XM_054072352.1:576..1805"
                     /db_xref="GeneID:104065869"
ORIGIN      
        1 mslgklpvls wvsgshgkrr lkseltpdmi spplgdfrht mhvgrggdvf gdtsflsnhg
       61 gaetakannf ftrtlrhvrr tplksrgsgc qakaspappp ispiiknavs lpqlnegmyd
      121 ggsgsqslts rfsfksasns fskthqvygl esgfctiprv prlekaqena ftgedelnrs
      181 dsllsfrldl gpslmsellq vmsfsetngn evgedgadlp naegtkdevl pasgaahged
      241 katlsywdrs gqtslsgass lpglsvhang eahaiegagk dpawasgpga vprgtpwqgh
      301 wndcsieage fdraaqvlar hyggtstprs sekvegprqa rtqtlwesps ssswrsqvtg
      361 eslspeatwn qgeeeaelss lqegyvgarg mhsnsfeyad eeeddevkv
//
LOCUS       XP_053928328             409 aa            linear   VRT 09-MAR-2023
DEFINITION  cdc42 effector protein 1 [Cuculus canorus].
ACCESSION   XP_053928328
VERSION     XP_053928328.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072353.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..409
                     /product="cdc42 effector protein 1"
                     /calculated_mol_wt=43651
     Region          29..>56
                     /region_name="CRIB"
                     /note="PAK (p21 activated kinase) Binding Domain (PBD),
                     binds Cdc42p- and/or Rho-like small GTPases; also known as
                     the Cdc42/Rac interactive binding (CRIB) motif; has been
                     shown to inhibit transcriptional activation and cell
                     transformation mediated by the...; cl00113"
                     /db_xref="CDD:412170"
     Region          106..203
                     /region_name="BORG_CEP"
                     /note="Cdc42 effector; pfam14957"
                     /db_xref="CDD:464403"
     CDS             1..409
                     /gene="CDC42EP1"
                     /coded_by="XM_054072353.1:1202..2431"
                     /db_xref="GeneID:104065869"
ORIGIN      
        1 mslgklpvls wvsgshgkrr lkseltpdmi spplgdfrht mhvgrggdvf gdtsflsnhg
       61 gaetakannf ftrtlrhvrr tplksrgsgc qakaspappp ispiiknavs lpqlnegmyd
      121 ggsgsqslts rfsfksasns fskthqvygl esgfctiprv prlekaqena ftgedelnrs
      181 dsllsfrldl gpslmsellq vmsfsetngn evgedgadlp naegtkdevl pasgaahged
      241 katlsywdrs gqtslsgass lpglsvhang eahaiegagk dpawasgpga vprgtpwqgh
      301 wndcsieage fdraaqvlar hyggtstprs sekvegprqa rtqtlwesps ssswrsqvtg
      361 eslspeatwn qgeeeaelss lqegyvgarg mhsnsfeyad eeeddevkv
//
LOCUS       XP_053928333             409 aa            linear   VRT 09-MAR-2023
DEFINITION  cdc42 effector protein 1 [Cuculus canorus].
ACCESSION   XP_053928333
VERSION     XP_053928333.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072358.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..409
                     /product="cdc42 effector protein 1"
                     /calculated_mol_wt=43651
     Region          29..>56
                     /region_name="CRIB"
                     /note="PAK (p21 activated kinase) Binding Domain (PBD),
                     binds Cdc42p- and/or Rho-like small GTPases; also known as
                     the Cdc42/Rac interactive binding (CRIB) motif; has been
                     shown to inhibit transcriptional activation and cell
                     transformation mediated by the...; cl00113"
                     /db_xref="CDD:412170"
     Region          106..203
                     /region_name="BORG_CEP"
                     /note="Cdc42 effector; pfam14957"
                     /db_xref="CDD:464403"
     CDS             1..409
                     /gene="CDC42EP1"
                     /coded_by="XM_054072358.1:690..1919"
                     /db_xref="GeneID:104065869"
ORIGIN      
        1 mslgklpvls wvsgshgkrr lkseltpdmi spplgdfrht mhvgrggdvf gdtsflsnhg
       61 gaetakannf ftrtlrhvrr tplksrgsgc qakaspappp ispiiknavs lpqlnegmyd
      121 ggsgsqslts rfsfksasns fskthqvygl esgfctiprv prlekaqena ftgedelnrs
      181 dsllsfrldl gpslmsellq vmsfsetngn evgedgadlp naegtkdevl pasgaahged
      241 katlsywdrs gqtslsgass lpglsvhang eahaiegagk dpawasgpga vprgtpwqgh
      301 wndcsieage fdraaqvlar hyggtstprs sekvegprqa rtqtlwesps ssswrsqvtg
      361 eslspeatwn qgeeeaelss lqegyvgarg mhsnsfeyad eeeddevkv
//
LOCUS       XP_009566735             131 aa            linear   VRT 09-MAR-2023
DEFINITION  galectin-2 [Cuculus canorus].
ACCESSION   XP_009566735
VERSION     XP_009566735.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568440.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..131
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..131
                     /product="galectin-2"
                     /calculated_mol_wt=14878
     Region          12..129
                     /region_name="Gal-bind_lectin"
                     /note="Galactoside-binding lectin; smart00908"
                     /db_xref="CDD:214904"
     Site            order(13..15,18,21,87..89,94,96,99)
                     /site_type="other"
                     /note="putative alternate dimerization interface
                     [polypeptide binding]"
                     /db_xref="CDD:238025"
     Site            order(45,47,49,56,58,65,68,70)
                     /site_type="other"
                     /note="sugar binding pocket [chemical binding]"
                     /db_xref="CDD:238025"
     CDS             1..131
                     /gene="LGALS2"
                     /coded_by="XM_009568440.2:122..517"
                     /db_xref="GeneID:104065908"
ORIGIN      
        1 msekfeilnl dmktgdtlkv kgkisddsdr fsinlgcsss dlalhfnprf desaiicnsk
       61 cskawqeeyr dnhlcfskgs ivkftiemlg dkfrvklpdg heiefpnrhs yskisylnik
      121 ggfrvtsfkl d
//
LOCUS       XP_053928356            1225 aa            linear   VRT 09-MAR-2023
DEFINITION  protocadherin-9 isoform X1 [Cuculus canorus].
ACCESSION   XP_053928356
VERSION     XP_053928356.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072381.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1225
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1225
                     /product="protocadherin-9 isoform X1"
                     /calculated_mol_wt=135020
     Region          29..138
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(36..37,93,95,134,136..137)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          146..248
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(153..154,211,213,244,246..247)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          258..354
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(263..264,319,321,350,352..353)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          370..465
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(375..376,428,430,461,463..464)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          473..568
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(480..481,531,533,564,566..567)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          576..671
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(583..584,634,636,667,669..670)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          687..776
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          777..1000
                     /region_name="Protocadherin"
                     /note="pfam08374"
                     /db_xref="CDD:462451"
     CDS             1..1225
                     /gene="PCDH9"
                     /coded_by="XM_054072381.1:689..4366"
                     /db_xref="GeneID:104059736"
ORIGIN      
        1 mdlrdfylla aliaclrlds aiaqeliyti reelpenvpi gnipkdlnis hinaatgtsa
       61 slvyrlvska gdaplvkvss ttgeifttsn ridreklcag asyaeenecf felevvilpn
      121 dffrlikiki ivkdtndnap mfpspvinis ipentlinsr fpipsatdpd tgfngvqhye
      181 llngqsvfgl divetpegek wpqlivqqnl dreqkdtyvm kikvedggtp qksstailqv
      241 tvsdvndnrp vfkesqvevh ipenapvgts viqlhatdad igsnaeiryi fgaqvapatk
      301 rffalnnttg litvqrsldr eetaihkvtv lasdgsstpa ratvtinvtd vndnppnidl
      361 ryiispingt vylsekdpin tkialitvsd kdtdvngkvi cfierevpfh lkavydnqyl
      421 letsslldye gtkefsfkiv asdsgkpsln qtalvrvkle dendnppifs qpvielsvse
      481 nnrrglyltt isatdedsgk nadivyqlgp nasffdldrk tgvltasrvf dreeqerfif
      541 tvtardngtp plqsqaaviv tvldendnsp kfthnhfqff vsenlpkyst vgvitvtdad
      601 agenkavtls ilndnenfvl dpysgviksn vsfdreqqss ytfdvkavdg gqpprsstak
      661 vtinvmdvnd nspvviypps ntsfklvpls aipgsvvaev favdidtgmn aelkytivsg
      721 nnkglfridp vtgnitleek ptpndvglhr lvvnisdlgy pkslhtlvlv flyvndtagn
      781 asyiydlirr tmetpldrni gdsnqpyqne dyltimiaiv agamvvivvi fvtvlvrcrh
      841 asrfkaaqrs kqgaewmspn qenkqnkkkk rkkrkspkss llnfvtiees kpddavhepi
      901 ngtislpael eeqsigrfdw gtappttfkp nspdlakhyk saspqsafhl kpdtpvsvkk
      961 hhviqelpld ntfvggcdtl skrsstssdh fsasecssqg gfktkgplht rqalnfgdmp
     1021 kylweiwvpd kpwvsqrrvt fhlpdgsqes csdsglgdhe pvgggtlish plplvqpqdd
     1081 fydqaspdkr teadgnsdpn sdgplgprgl aeatemctqe clvlghsdnc wmppslgpyq
     1141 qpksplstfa pqkewvkkdk lvnghtltrt wkedsnrnqf sdrkqygsse ghfntgnhmt
     1201 diplanlksy kqasgavesp kehql
//
LOCUS       XP_009559742            1203 aa            linear   VRT 09-MAR-2023
DEFINITION  protocadherin-9 isoform X2 [Cuculus canorus].
ACCESSION   XP_009559742
VERSION     XP_009559742.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009561447.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009559742.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1203
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1203
                     /product="protocadherin-9 isoform X2"
                     /calculated_mol_wt=132333
     Region          29..138
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(36..37,93,95,134,136..137)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          146..248
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(153..154,211,213,244,246..247)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          258..354
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(263..264,319,321,350,352..353)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          370..465
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(375..376,428,430,461,463..464)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          473..568
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(480..481,531,533,564,566..567)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          576..671
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(583..584,634,636,667,669..670)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          687..776
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          777..1000
                     /region_name="Protocadherin"
                     /note="pfam08374"
                     /db_xref="CDD:462451"
     CDS             1..1203
                     /gene="PCDH9"
                     /coded_by="XM_009561447.2:689..4300"
                     /db_xref="GeneID:104059736"
ORIGIN      
        1 mdlrdfylla aliaclrlds aiaqeliyti reelpenvpi gnipkdlnis hinaatgtsa
       61 slvyrlvska gdaplvkvss ttgeifttsn ridreklcag asyaeenecf felevvilpn
      121 dffrlikiki ivkdtndnap mfpspvinis ipentlinsr fpipsatdpd tgfngvqhye
      181 llngqsvfgl divetpegek wpqlivqqnl dreqkdtyvm kikvedggtp qksstailqv
      241 tvsdvndnrp vfkesqvevh ipenapvgts viqlhatdad igsnaeiryi fgaqvapatk
      301 rffalnnttg litvqrsldr eetaihkvtv lasdgsstpa ratvtinvtd vndnppnidl
      361 ryiispingt vylsekdpin tkialitvsd kdtdvngkvi cfierevpfh lkavydnqyl
      421 letsslldye gtkefsfkiv asdsgkpsln qtalvrvkle dendnppifs qpvielsvse
      481 nnrrglyltt isatdedsgk nadivyqlgp nasffdldrk tgvltasrvf dreeqerfif
      541 tvtardngtp plqsqaaviv tvldendnsp kfthnhfqff vsenlpkyst vgvitvtdad
      601 agenkavtls ilndnenfvl dpysgviksn vsfdreqqss ytfdvkavdg gqpprsstak
      661 vtinvmdvnd nspvviypps ntsfklvpls aipgsvvaev favdidtgmn aelkytivsg
      721 nnkglfridp vtgnitleek ptpndvglhr lvvnisdlgy pkslhtlvlv flyvndtagn
      781 asyiydlirr tmetpldrni gdsnqpyqne dyltimiaiv agamvvivvi fvtvlvrcrh
      841 asrfkaaqrs kqgaewmspn qenkqnkkkk rkkrkspkss llnfvtiees kpddavhepi
      901 ngtislpael eeqsigrfdw gtappttfkp nspdlakhyk saspqsafhl kpdtpvsvkk
      961 hhviqelpld ntfvggcdtl skrsstssdh fsasecssqg gfktkgplht rqsqrrvtfh
     1021 lpdgsqescs dsglgdhepv gggtlishpl plvqpqddfy dqaspdkrte adgnsdpnsd
     1081 gplgprglae atemctqecl vlghsdncwm ppslgpyqqp ksplstfapq kewvkkdklv
     1141 nghtltrtwk edsnrnqfsd rkqygssegh fntgnhmtdi planlksykq asgavespke
     1201 hql
//
LOCUS       XP_053928373            1183 aa            linear   VRT 09-MAR-2023
DEFINITION  protocadherin-9 isoform X3 [Cuculus canorus].
ACCESSION   XP_053928373
VERSION     XP_053928373.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072398.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1183
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1183
                     /product="protocadherin-9 isoform X3"
                     /calculated_mol_wt=130626
     Region          29..138
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(36..37,93,95,134,136..137)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          146..248
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(153..154,211,213,244,246..247)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          258..354
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(263..264,319,321,350,352..353)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          370..465
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(375..376,428,430,461,463..464)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          473..568
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(480..481,531,533,564,566..567)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          576..671
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(583..584,634,636,667,669..670)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          687..776
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          777..1000
                     /region_name="Protocadherin"
                     /note="pfam08374"
                     /db_xref="CDD:462451"
     CDS             1..1183
                     /gene="PCDH9"
                     /coded_by="XM_054072398.1:689..4240"
                     /db_xref="GeneID:104059736"
ORIGIN      
        1 mdlrdfylla aliaclrlds aiaqeliyti reelpenvpi gnipkdlnis hinaatgtsa
       61 slvyrlvska gdaplvkvss ttgeifttsn ridreklcag asyaeenecf felevvilpn
      121 dffrlikiki ivkdtndnap mfpspvinis ipentlinsr fpipsatdpd tgfngvqhye
      181 llngqsvfgl divetpegek wpqlivqqnl dreqkdtyvm kikvedggtp qksstailqv
      241 tvsdvndnrp vfkesqvevh ipenapvgts viqlhatdad igsnaeiryi fgaqvapatk
      301 rffalnnttg litvqrsldr eetaihkvtv lasdgsstpa ratvtinvtd vndnppnidl
      361 ryiispingt vylsekdpin tkialitvsd kdtdvngkvi cfierevpfh lkavydnqyl
      421 letsslldye gtkefsfkiv asdsgkpsln qtalvrvkle dendnppifs qpvielsvse
      481 nnrrglyltt isatdedsgk nadivyqlgp nasffdldrk tgvltasrvf dreeqerfif
      541 tvtardngtp plqsqaaviv tvldendnsp kfthnhfqff vsenlpkyst vgvitvtdad
      601 agenkavtls ilndnenfvl dpysgviksn vsfdreqqss ytfdvkavdg gqpprsstak
      661 vtinvmdvnd nspvviypps ntsfklvpls aipgsvvaev favdidtgmn aelkytivsg
      721 nnkglfridp vtgnitleek ptpndvglhr lvvnisdlgy pkslhtlvlv flyvndtagn
      781 asyiydlirr tmetpldrni gdsnqpyqne dyltimiaiv agamvvivvi fvtvlvrcrh
      841 asrfkaaqrs kqgaewmspn qenkqnkkkk rkkrkspkss llnfvtiees kpddavhepi
      901 ngtislpael eeqsigrfdw gtappttfkp nspdlakhyk saspqsafhl kpdtpvsvkk
      961 hhviqelpld ntfvggcdtl skrsstssdh fsasecssqg gfktkgplht rqalnfgdmp
     1021 kylweiwvpd kpwvpqddfy dqaspdkrte adgnsdpnsd gplgprglae atemctqecl
     1081 vlghsdncwm ppslgpyqqp ksplstfapq kewvkkdklv nghtltrtwk edsnrnqfsd
     1141 rkqygssegh fntgnhmtdi planlksykq asgavespke hql
//
LOCUS       XP_053928378            1161 aa            linear   VRT 09-MAR-2023
DEFINITION  protocadherin-9 isoform X4 [Cuculus canorus].
ACCESSION   XP_053928378
VERSION     XP_053928378.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072403.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1161
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1161
                     /product="protocadherin-9 isoform X4"
                     /calculated_mol_wt=127939
     Region          29..138
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(36..37,93,95,134,136..137)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          146..248
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(153..154,211,213,244,246..247)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          258..354
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(263..264,319,321,350,352..353)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          370..465
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(375..376,428,430,461,463..464)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          473..568
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(480..481,531,533,564,566..567)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          576..671
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(583..584,634,636,667,669..670)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          687..776
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          777..1000
                     /region_name="Protocadherin"
                     /note="pfam08374"
                     /db_xref="CDD:462451"
     CDS             1..1161
                     /gene="PCDH9"
                     /coded_by="XM_054072403.1:689..4174"
                     /db_xref="GeneID:104059736"
ORIGIN      
        1 mdlrdfylla aliaclrlds aiaqeliyti reelpenvpi gnipkdlnis hinaatgtsa
       61 slvyrlvska gdaplvkvss ttgeifttsn ridreklcag asyaeenecf felevvilpn
      121 dffrlikiki ivkdtndnap mfpspvinis ipentlinsr fpipsatdpd tgfngvqhye
      181 llngqsvfgl divetpegek wpqlivqqnl dreqkdtyvm kikvedggtp qksstailqv
      241 tvsdvndnrp vfkesqvevh ipenapvgts viqlhatdad igsnaeiryi fgaqvapatk
      301 rffalnnttg litvqrsldr eetaihkvtv lasdgsstpa ratvtinvtd vndnppnidl
      361 ryiispingt vylsekdpin tkialitvsd kdtdvngkvi cfierevpfh lkavydnqyl
      421 letsslldye gtkefsfkiv asdsgkpsln qtalvrvkle dendnppifs qpvielsvse
      481 nnrrglyltt isatdedsgk nadivyqlgp nasffdldrk tgvltasrvf dreeqerfif
      541 tvtardngtp plqsqaaviv tvldendnsp kfthnhfqff vsenlpkyst vgvitvtdad
      601 agenkavtls ilndnenfvl dpysgviksn vsfdreqqss ytfdvkavdg gqpprsstak
      661 vtinvmdvnd nspvviypps ntsfklvpls aipgsvvaev favdidtgmn aelkytivsg
      721 nnkglfridp vtgnitleek ptpndvglhr lvvnisdlgy pkslhtlvlv flyvndtagn
      781 asyiydlirr tmetpldrni gdsnqpyqne dyltimiaiv agamvvivvi fvtvlvrcrh
      841 asrfkaaqrs kqgaewmspn qenkqnkkkk rkkrkspkss llnfvtiees kpddavhepi
      901 ngtislpael eeqsigrfdw gtappttfkp nspdlakhyk saspqsafhl kpdtpvsvkk
      961 hhviqelpld ntfvggcdtl skrsstssdh fsasecssqg gfktkgplht rqpqddfydq
     1021 aspdkrtead gnsdpnsdgp lgprglaeat emctqeclvl ghsdncwmpp slgpyqqpks
     1081 plstfapqke wvkkdklvng htltrtwked snrnqfsdrk qygsseghfn tgnhmtdipl
     1141 anlksykqas gavespkehq l
//
LOCUS       XP_053928388            1107 aa            linear   VRT 09-MAR-2023
DEFINITION  protocadherin-9 isoform X5 [Cuculus canorus].
ACCESSION   XP_053928388
VERSION     XP_053928388.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072413.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1107
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1107
                     /product="protocadherin-9 isoform X5"
                     /calculated_mol_wt=121928
     Region          29..138
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(36..37,93,95,134,136..137)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          146..248
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(153..154,211,213,244,246..247)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          258..354
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(263..264,319,321,350,352..353)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          370..465
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(375..376,428,430,461,463..464)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          473..568
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(480..481,531,533,564,566..567)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          576..671
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(583..584,634,636,667,669..670)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          687..776
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          777..1000
                     /region_name="Protocadherin"
                     /note="pfam08374"
                     /db_xref="CDD:462451"
     CDS             1..1107
                     /gene="PCDH9"
                     /coded_by="XM_054072413.1:689..4012"
                     /db_xref="GeneID:104059736"
ORIGIN      
        1 mdlrdfylla aliaclrlds aiaqeliyti reelpenvpi gnipkdlnis hinaatgtsa
       61 slvyrlvska gdaplvkvss ttgeifttsn ridreklcag asyaeenecf felevvilpn
      121 dffrlikiki ivkdtndnap mfpspvinis ipentlinsr fpipsatdpd tgfngvqhye
      181 llngqsvfgl divetpegek wpqlivqqnl dreqkdtyvm kikvedggtp qksstailqv
      241 tvsdvndnrp vfkesqvevh ipenapvgts viqlhatdad igsnaeiryi fgaqvapatk
      301 rffalnnttg litvqrsldr eetaihkvtv lasdgsstpa ratvtinvtd vndnppnidl
      361 ryiispingt vylsekdpin tkialitvsd kdtdvngkvi cfierevpfh lkavydnqyl
      421 letsslldye gtkefsfkiv asdsgkpsln qtalvrvkle dendnppifs qpvielsvse
      481 nnrrglyltt isatdedsgk nadivyqlgp nasffdldrk tgvltasrvf dreeqerfif
      541 tvtardngtp plqsqaaviv tvldendnsp kfthnhfqff vsenlpkyst vgvitvtdad
      601 agenkavtls ilndnenfvl dpysgviksn vsfdreqqss ytfdvkavdg gqpprsstak
      661 vtinvmdvnd nspvviypps ntsfklvpls aipgsvvaev favdidtgmn aelkytivsg
      721 nnkglfridp vtgnitleek ptpndvglhr lvvnisdlgy pkslhtlvlv flyvndtagn
      781 asyiydlirr tmetpldrni gdsnqpyqne dyltimiaiv agamvvivvi fvtvlvrcrh
      841 asrfkaaqrs kqgaewmspn qenkqnkkkk rkkrkspkss llnfvtiees kpddavhepi
      901 ngtislpael eeqsigrfdw gtappttfkp nspdlakhyk saspqsafhl kpdtpvsvkk
      961 hhviqelpld ntfvggcdtl skrsstssdh fsasecssqg gfktkgplht rqalnfgdmp
     1021 kylweiwvpd kpwvsqrrvt fhlpdgsqes csdsglgdhe pvgggtlish plplvqpqdd
     1081 fydqaspdkr teadgnsdpn semllel
//
LOCUS       XP_053928396            1018 aa            linear   VRT 09-MAR-2023
DEFINITION  protocadherin-9 isoform X6 [Cuculus canorus].
ACCESSION   XP_053928396
VERSION     XP_053928396.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072421.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1018
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1018
                     /product="protocadherin-9 isoform X6"
                     /calculated_mol_wt=111925
     Region          28..117
                     /region_name="Cadherin_2"
                     /note="Cadherin-like; pfam08266"
                     /db_xref="CDD:462413"
     Region          146..248
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(153..154,211,213,244,246..247)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          258..354
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(263..264,319,321,350,352..353)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          370..465
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(375..376,428,430,461,463..464)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          473..568
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(480..481,531,533,564,566..567)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          576..671
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(583..584,634,636,667,669..670)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          687..776
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          777..1000
                     /region_name="Protocadherin"
                     /note="pfam08374"
                     /db_xref="CDD:462451"
     CDS             1..1018
                     /gene="PCDH9"
                     /coded_by="XM_054072421.1:689..3745"
                     /db_xref="GeneID:104059736"
ORIGIN      
        1 mdlrdfylla aliaclrlds aiaqeliyti reelpenvpi gnipkdlnis hinaatgtsa
       61 slvyrlvska gdaplvkvss ttgeifttsn ridreklcag asyaeenecf felevvilpn
      121 dffrlikiki ivkdtndnap mfpspvinis ipentlinsr fpipsatdpd tgfngvqhye
      181 llngqsvfgl divetpegek wpqlivqqnl dreqkdtyvm kikvedggtp qksstailqv
      241 tvsdvndnrp vfkesqvevh ipenapvgts viqlhatdad igsnaeiryi fgaqvapatk
      301 rffalnnttg litvqrsldr eetaihkvtv lasdgsstpa ratvtinvtd vndnppnidl
      361 ryiispingt vylsekdpin tkialitvsd kdtdvngkvi cfierevpfh lkavydnqyl
      421 letsslldye gtkefsfkiv asdsgkpsln qtalvrvkle dendnppifs qpvielsvse
      481 nnrrglyltt isatdedsgk nadivyqlgp nasffdldrk tgvltasrvf dreeqerfif
      541 tvtardngtp plqsqaaviv tvldendnsp kfthnhfqff vsenlpkyst vgvitvtdad
      601 agenkavtls ilndnenfvl dpysgviksn vsfdreqqss ytfdvkavdg gqpprsstak
      661 vtinvmdvnd nspvviypps ntsfklvpls aipgsvvaev favdidtgmn aelkytivsg
      721 nnkglfridp vtgnitleek ptpndvglhr lvvnisdlgy pkslhtlvlv flyvndtagn
      781 asyiydlirr tmetpldrni gdsnqpyqne dyltimiaiv agamvvivvi fvtvlvrcrh
      841 asrfkaaqrs kqgaewmspn qenkqnkkkk rkkrkspkss llnfvtiees kpddavhepi
      901 ngtislpael eeqsigrfdw gtappttfkp nspdlakhyk saspqsafhl kpdtpvsvkk
      961 hhviqelpld ntfvggcdtl skrsstssdh fsasecssqg gfktkgplht rqcspssp
//
LOCUS       XP_053928408             912 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor ionotropic, kainate 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053928408
VERSION     XP_053928408.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072433.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..912
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..912
                     /product="glutamate receptor ionotropic, kainate 1 isoform
                     X1"
                     /calculated_mol_wt=103022
     Region          30..423
                     /region_name="PBP1_iGluR_Kainate"
                     /note="N-terminal leucine-isoleucine-valine binding
                     protein (LIVBP)-like domain of the kainate receptors;
                     cd06382"
                     /db_xref="CDD:380605"
     Site            order(80..82,86,117,169,172,176,179,182..183,193..196)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:380605"
     Region          438..807
                     /region_name="Periplasmic_Binding_Protein_Type_2"
                     /note="Type 2 periplasmic binding fold superfamily;
                     cl21456"
                     /db_xref="CDD:473866"
     CDS             1..912
                     /gene="GRIK1"
                     /coded_by="XM_054072433.1:166..2904"
                     /db_xref="GeneID:104064797"
ORIGIN      
        1 masalgprrl lfallcawag vprsgqqvlr iggifetven epvnieelaf kfavtninrn
       61 rtlmpnttlt ydiqrinlfd sfeasrracd qlalgvaalf gpshsssvsa vqsicnalev
      121 phiqtrwkhp tvdikdafyi nlypdyaais ravldlvlyy nwkivtvvye dstglirlqe
      181 likapsryni kikirqlpsg nkdarpllke mkkgkefyvi fdcshetaae ilkqilsmgm
      241 mteyyhyfft tldlfaldle pyrysgvnmt gfrllnienp hvssvvekws merlqappkp
      301 etglldgmmt teaalmydav ymvavasqra sqmtvsslqc hrhkpwrfgp rfmnlikear
      361 wdgltgritf nktdglrkdf dldiislkee gtekaagevs nhlykvwkki gvwnsysgln
      421 mtdsnkdrst nitdslanrt livttiledp yvmykksdkp lygndrfegy cldllkelsn
      481 ilgfiyevkl vsdgkygaqn dkgewngmvk elidhkadla vapltityvr ekvidfskpf
      541 mtlgisilyr kpngtnpgvf sflnplspdi wmyvllaclg vscvlfviar ftpyewynph
      601 pcnpdsdvve nnftllnsfw fgvgalmqqg selmpkalst rivggiwwff tliiissyta
      661 nlaafltver mespidsadd lakqtkieyg avrdgstmtf fkkskistye kmwafmssrq
      721 qtalvknnde giqrvlttdy allmestsie yvtqrncnlt qigglidskg ygvgtpigsp
      781 yrdkitiail qlqeegklhm mkekwwrgng cpeedskeas algveniggi fivlaaglvl
      841 svfvaigefi yksrknsdie qclsfnaime elgislkhqk klkkrsrtkg kssftsiltc
      901 hqrrtlrket ia
//
LOCUS       XP_053928416             910 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor ionotropic, kainate 1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053928416
VERSION     XP_053928416.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072441.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..910
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..910
                     /product="glutamate receptor ionotropic, kainate 1 isoform
                     X2"
                     /calculated_mol_wt=102579
     Region          30..423
                     /region_name="PBP1_iGluR_Kainate"
                     /note="N-terminal leucine-isoleucine-valine binding
                     protein (LIVBP)-like domain of the kainate receptors;
                     cd06382"
                     /db_xref="CDD:380605"
     Site            order(80..82,86,117,169,172,176,179,182..183,193..196)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:380605"
     Region          438..807
                     /region_name="Periplasmic_Binding_Protein_Type_2"
                     /note="Type 2 periplasmic binding fold superfamily;
                     cl21456"
                     /db_xref="CDD:473866"
     CDS             1..910
                     /gene="GRIK1"
                     /coded_by="XM_054072441.1:165..2897"
                     /db_xref="GeneID:104064797"
ORIGIN      
        1 masalgprrl lfallcawag vprsgqqvlr iggifetven epvnieelaf kfavtninrn
       61 rtlmpnttlt ydiqrinlfd sfeasrracd qlalgvaalf gpshsssvsa vqsicnalev
      121 phiqtrwkhp tvdikdafyi nlypdyaais ravldlvlyy nwkivtvvye dstglirlqe
      181 likapsryni kikirqlpsg nkdarpllke mkkgkefyvi fdcshetaae ilkqilsmgm
      241 mteyyhyfft tldlfaldle pyrysgvnmt gfrllnienp hvssvvekws merlqappkp
      301 etglldgmmt teaalmydav ymvavasqra sqmtvsslqc hrhkpwrfgp rfmnlikear
      361 wdgltgritf nktdglrkdf dldiislkee gtekaagevs nhlykvwkki gvwnsysgln
      421 mtdsnkdrst nitdslanrt livttiledp yvmykksdkp lygndrfegy cldllkelsn
      481 ilgfiyevkl vsdgkygaqn dkgewngmvk elidhkadla vapltityvr ekvidfskpf
      541 mtlgisilyr kpngtnpgvf sflnplspdi wmyvllaclg vscvlfviar ftpyewynph
      601 pcnpdsdvve nnftllnsfw fgvgalmqqg selmpkalst rivggiwwff tliiissyta
      661 nlaafltver mespidsadd lakqtkieyg avrdgstmtf fkkskistye kmwafmssrq
      721 qtalvknnde giqrvlttdy allmestsie yvtqrncnlt qigglidskg ygvgtpigsp
      781 yrdkitiail qlqeegklhm mkekwwrgng cpeedskeas algveniggi fivlaaglvl
      841 svfvaigefi yksrknsdie qafcffyglq ckqthpsnst sgttlsteld cgklireerg
      901 irtqpsihtv
//
LOCUS       XP_053928424             897 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor ionotropic, kainate 1 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053928424
VERSION     XP_053928424.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072449.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..897
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..897
                     /product="glutamate receptor ionotropic, kainate 1 isoform
                     X3"
                     /calculated_mol_wt=101310
     Region          30..408
                     /region_name="PBP1_iGluR_Kainate"
                     /note="N-terminal leucine-isoleucine-valine binding
                     protein (LIVBP)-like domain of the kainate receptors;
                     cd06382"
                     /db_xref="CDD:380605"
     Site            order(80..82,86,117,169,172,176,179,182..183,193..196)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:380605"
     Region          423..792
                     /region_name="Periplasmic_Binding_Protein_Type_2"
                     /note="Type 2 periplasmic binding fold superfamily;
                     cl21456"
                     /db_xref="CDD:473866"
     CDS             1..897
                     /gene="GRIK1"
                     /coded_by="XM_054072449.1:166..2859"
                     /db_xref="GeneID:104064797"
ORIGIN      
        1 masalgprrl lfallcawag vprsgqqvlr iggifetven epvnieelaf kfavtninrn
       61 rtlmpnttlt ydiqrinlfd sfeasrracd qlalgvaalf gpshsssvsa vqsicnalev
      121 phiqtrwkhp tvdikdafyi nlypdyaais ravldlvlyy nwkivtvvye dstglirlqe
      181 likapsryni kikirqlpsg nkdarpllke mkkgkefyvi fdcshetaae ilkqilsmgm
      241 mteyyhyfft tldlfaldle pyrysgvnmt gfrllnienp hvssvvekws merlqappkp
      301 etglldgmmt teaalmydav ymvavasqra sqmtvsslqc hrhkpwrfgp rfmnlikear
      361 wdgltgritf nktdglrkdf dldiislkee gtekigvwns ysglnmtdsn kdrstnitds
      421 lanrtlivtt iledpyvmyk ksdkplygnd rfegycldll kelsnilgfi yevklvsdgk
      481 ygaqndkgew ngmvkelidh kadlavaplt ityvrekvid fskpfmtlgi silyrkpngt
      541 npgvfsflnp lspdiwmyvl laclgvscvl fviarftpye wynphpcnpd sdvvennftl
      601 lnsfwfgvga lmqqgselmp kalstrivgg iwwfftliii ssytanlaaf ltvermespi
      661 dsaddlakqt kieygavrdg stmtffkksk istyekmwaf mssrqqtalv knndegiqrv
      721 lttdyallme stsieyvtqr ncnltqiggl idskgygvgt pigspyrdki tiailqlqee
      781 gklhmmkekw wrgngcpeed skeasalgve niggifivla aglvlsvfva igefiyksrk
      841 nsdieqclsf naimeelgis lkhqkklkkr srtkgkssft siltchqrrt lrketia
//
LOCUS       XP_053928431             895 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor ionotropic, kainate 1 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053928431
VERSION     XP_053928431.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072456.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..895
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..895
                     /product="glutamate receptor ionotropic, kainate 1 isoform
                     X4"
                     /calculated_mol_wt=100867
     Region          30..408
                     /region_name="PBP1_iGluR_Kainate"
                     /note="N-terminal leucine-isoleucine-valine binding
                     protein (LIVBP)-like domain of the kainate receptors;
                     cd06382"
                     /db_xref="CDD:380605"
     Site            order(80..82,86,117,169,172,176,179,182..183,193..196)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:380605"
     Region          423..792
                     /region_name="Periplasmic_Binding_Protein_Type_2"
                     /note="Type 2 periplasmic binding fold superfamily;
                     cl21456"
                     /db_xref="CDD:473866"
     CDS             1..895
                     /gene="GRIK1"
                     /coded_by="XM_054072456.1:166..2853"
                     /db_xref="GeneID:104064797"
ORIGIN      
        1 masalgprrl lfallcawag vprsgqqvlr iggifetven epvnieelaf kfavtninrn
       61 rtlmpnttlt ydiqrinlfd sfeasrracd qlalgvaalf gpshsssvsa vqsicnalev
      121 phiqtrwkhp tvdikdafyi nlypdyaais ravldlvlyy nwkivtvvye dstglirlqe
      181 likapsryni kikirqlpsg nkdarpllke mkkgkefyvi fdcshetaae ilkqilsmgm
      241 mteyyhyfft tldlfaldle pyrysgvnmt gfrllnienp hvssvvekws merlqappkp
      301 etglldgmmt teaalmydav ymvavasqra sqmtvsslqc hrhkpwrfgp rfmnlikear
      361 wdgltgritf nktdglrkdf dldiislkee gtekigvwns ysglnmtdsn kdrstnitds
      421 lanrtlivtt iledpyvmyk ksdkplygnd rfegycldll kelsnilgfi yevklvsdgk
      481 ygaqndkgew ngmvkelidh kadlavaplt ityvrekvid fskpfmtlgi silyrkpngt
      541 npgvfsflnp lspdiwmyvl laclgvscvl fviarftpye wynphpcnpd sdvvennftl
      601 lnsfwfgvga lmqqgselmp kalstrivgg iwwfftliii ssytanlaaf ltvermespi
      661 dsaddlakqt kieygavrdg stmtffkksk istyekmwaf mssrqqtalv knndegiqrv
      721 lttdyallme stsieyvtqr ncnltqiggl idskgygvgt pigspyrdki tiailqlqee
      781 gklhmmkekw wrgngcpeed skeasalgve niggifivla aglvlsvfva igefiyksrk
      841 nsdieqafcf fyglqckqth psnstsgttl steldcgkli reergirtqp sihtv
//
LOCUS       XP_053928446             394 aa            linear   VRT 09-MAR-2023
DEFINITION  nucleosome assembly protein 1-like 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053928446
VERSION     XP_053928446.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072471.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..394
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..394
                     /product="nucleosome assembly protein 1-like 1 isoform X1"
                     /calculated_mol_wt=45464
     Region          77..344
                     /region_name="NAP"
                     /note="Nucleosome assembly protein (NAP); pfam00956"
                     /db_xref="CDD:460010"
     CDS             1..394
                     /gene="NAP1L1"
                     /coded_by="XM_054072471.1:142..1326"
                     /db_xref="GeneID:104061136"
ORIGIN      
        1 madtdnkeqs eldqqdmedv eeveeeetge danskarqlt vqmmqnpqil aalqerldgl
       61 vgtstgyies lpkvvkrrvn alknlqvqca qieakfyeev helerkyaal yqplfdkrse
      121 iinaiyepte eecewkadve eeiseemkek akleeekkde ekedpkgipe fwltvfknvd
      181 llsdmvqehd epilkhlkdi kvkfsevgqp msftlefhfe pndyftnevl tktyrmrsep
      241 ddsdpfsfdg peimgctgcq idwkkgknvt lktikkkqkh kgrgtvrtvt ktvsndsffn
      301 ffsppevpen gdmdddaeai ltadfeighf lrerivprsv lyftgeaied dddddydeeg
      361 eeaddeegee eadeendpdy dpkkdqnpae ckqq
//
LOCUS       XP_053928455             394 aa            linear   VRT 09-MAR-2023
DEFINITION  nucleosome assembly protein 1-like 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053928455
VERSION     XP_053928455.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072480.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..394
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..394
                     /product="nucleosome assembly protein 1-like 1 isoform X1"
                     /calculated_mol_wt=45464
     Region          77..344
                     /region_name="NAP"
                     /note="Nucleosome assembly protein (NAP); pfam00956"
                     /db_xref="CDD:460010"
     CDS             1..394
                     /gene="NAP1L1"
                     /coded_by="XM_054072480.1:40..1224"
                     /db_xref="GeneID:104061136"
ORIGIN      
        1 madtdnkeqs eldqqdmedv eeveeeetge danskarqlt vqmmqnpqil aalqerldgl
       61 vgtstgyies lpkvvkrrvn alknlqvqca qieakfyeev helerkyaal yqplfdkrse
      121 iinaiyepte eecewkadve eeiseemkek akleeekkde ekedpkgipe fwltvfknvd
      181 llsdmvqehd epilkhlkdi kvkfsevgqp msftlefhfe pndyftnevl tktyrmrsep
      241 ddsdpfsfdg peimgctgcq idwkkgknvt lktikkkqkh kgrgtvrtvt ktvsndsffn
      301 ffsppevpen gdmdddaeai ltadfeighf lrerivprsv lyftgeaied dddddydeeg
      361 eeaddeegee eadeendpdy dpkkdqnpae ckqq
//
LOCUS       XP_053928459             393 aa            linear   VRT 09-MAR-2023
DEFINITION  nucleosome assembly protein 1-like 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053928459
VERSION     XP_053928459.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072484.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..393
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..393
                     /product="nucleosome assembly protein 1-like 1 isoform X2"
                     /calculated_mol_wt=45335
     Region          77..343
                     /region_name="NAP"
                     /note="Nucleosome assembly protein (NAP); pfam00956"
                     /db_xref="CDD:460010"
     CDS             1..393
                     /gene="NAP1L1"
                     /coded_by="XM_054072484.1:142..1323"
                     /db_xref="GeneID:104061136"
ORIGIN      
        1 madtdnkeqs eldqqdmedv eeveeeetge danskarqlt vqmmqnpqil aalqerldgl
       61 vgtstgyies lpkvvkrrvn alknlqvqca qieakfyeev helerkyaal yqplfdkrse
      121 iinaiyepte eecewkadve eeisemkeka kleeekkdee kedpkgipef wltvfknvdl
      181 lsdmvqehde pilkhlkdik vkfsevgqpm sftlefhfep ndyftnevlt ktyrmrsepd
      241 dsdpfsfdgp eimgctgcqi dwkkgknvtl ktikkkqkhk grgtvrtvtk tvsndsffnf
      301 fsppevpeng dmdddaeail tadfeighfl rerivprsvl yftgeaiedd ddddydeege
      361 eaddeegeee adeendpdyd pkkdqnpaec kqq
//
LOCUS       XP_053928471            2700 aa            linear   VRT 09-MAR-2023
DEFINITION  inositol 1,4,5-trisphosphate receptor type 2 [Cuculus canorus].
ACCESSION   XP_053928471
VERSION     XP_053928471.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072496.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2700
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2700
                     /product="inositol 1,4,5-trisphosphate receptor type 2"
                     /calculated_mol_wt=307436
     Region          5..228
                     /region_name="Ins145_P3_rec"
                     /note="Inositol 1,4,5-trisphosphate/ryanodine receptor;
                     pfam08709"
                     /db_xref="CDD:462572"
     Region          218..440
                     /region_name="beta-trefoil_MIR_ITPR2"
                     /note="MIR domain, beta-trefoil fold, found in inositol
                     1,4,5-trisphosphate receptor type 2 (ITPR2) and similar
                     proteins; cd23288"
                     /db_xref="CDD:467759"
     Site            order(245..246,387)
                     /site_type="other"
                     /note="putative homotetramer interface [polypeptide
                     binding]"
                     /db_xref="CDD:467759"
     Site            order(265,267..269,275)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:467759"
     Region          476..670
                     /region_name="RYDR_ITPR"
                     /note="RIH domain; pfam01365"
                     /db_xref="CDD:460175"
     Region          1203..1345
                     /region_name="RYDR_ITPR"
                     /note="RIH domain; pfam01365"
                     /db_xref="CDD:460175"
     Region          1916..2023
                     /region_name="RIH_assoc"
                     /note="RyR and IP3R Homology associated; pfam08454"
                     /db_xref="CDD:462482"
     Region          2273..2551
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..2700
                     /gene="ITPR2"
                     /coded_by="XM_054072496.1:142..8244"
                     /db_xref="GeneID:104067151"
ORIGIN      
        1 msekmssfly igdivslyae gsvngfistl glvddrcvvq peagdlanpp kkfrdclfkv
       61 cpmnrysaqk qywkakqakq gnhteaallk klqhaaeleq kqnesenrkl lgeivkysnv
      121 iqllhiksnk yltvnkrlpa lleknamrvs ldaagnegsw fyiqpfwklr segdnvvvgd
      181 kvvlmpvnag qplhasniel ldnpgckevn avncntswkv tlfmkfssyr ddvlkggdvv
      241 rlfhaeqekf ltcdeyekkq hiflrttlrq satsatsska lweievvhhd pcrggagqwn
      301 slfrfkhlat gnylaaelnp hypegnsegk amqrdgdlpp skkkrqagek imytlvsvph
      361 gndiaslfel dattlqradc lvprnsyvrl rhlctntwvt stsipidtde erpvmlkigt
      421 cqakedkeaf aivsvplsev rdldfandan kvlastvkkl engtitqner rfvtklledl
      481 iffvadvpnn gqevldvvvt kpnrerqklm reqnilaqif gilkapfkdk gegsmlrled
      541 lgdqryapyk ymlrlcyrvl rhsqqdyrkn qeyiaknfcv mqsqigydil aedtitallh
      601 nnrkllekhi takeietfvn llrrnreprf ldylsdlcvs nttaipvtqe lickfmlspg
      661 nadiliqtkl vstqmdnple cpvisddide eevwlywids nkephgkair hlaqeakegt
      721 kadlevltyy ryqlnlfarm cldrqylain qisaqlsvdl ilrcmsdesl pydlrasfcr
      781 lmlhmhvdrd pqetvvpvry arlwteiptk itiheydsft dssrnemkrk faltmefvee
      841 ylkevvnqpf pfgdkeknkl tfevvhlarn liyfgfysfs ellrltrtll aildivqvpi
      901 ssyferlskf qdggnnvmrt ihgvgemmtq mvlsrgsifp lsapeiqpni hpskqasase
      961 sedvivmdtk lkiieilqfi lsvrldyris ymlsiykref gennenidss atsppdthgi
     1021 asaivpdide iaaqaetmfa grkeknavql ddeggrtflr vlihlimhdy ppllsgalhl
     1081 lfkhfsqrae vlqafkqvql lvsnqdvdny kqikadldql rltvekselw vekssnyesg
     1141 egcdnqtkgg eepieepiil spiqdgtkkp qidsnksnny nivkeilirl sklcvqnkkc
     1201 rnqqqrllkn mgahlvvldl lqipyeksde kmnevmnlah tflqnfcrgn pqnqvllhkn
     1261 lnlfltpgll eaetmrhifm nnyllcneis ervvqhfvhc iethgrhvey lrflqtivka
     1321 dgkyvkkcqd mvmtelingg edvlifyndr asfpillqmm cserdrades gplayhitlv
     1381 ellaactegk nvyteikcns llplddivrv vthddcipev kiayvnfvnh cyvdtevemk
     1441 eiyasnhiwk lfenflvdma rvcntttdrk hadtslekyv tepvmnivsg ffnspfsdns
     1501 tslqthqpvf iqllqsafri ynctwpnptq kasvescikt laevaknrgi aipvdldsqv
     1561 ntlfmkshsn mvqraamgwr msarsgprfk ealggpawdy rniieklqdv vssleqqftp
     1621 mmqaefsvlv dvlhspellf pegsdarirc gafmsklinh tkklmekeek lcikilqtlr
     1681 emldkktnfa eeantlrkil lyryfkgeyg sgmngplsas ysknaqvggg fsgqdtdksg
     1741 itmfdiqcll dregaselvi dvivntkndr ifsegillgi alleggntqt qystyqqlke
     1801 qkksekffkv lydrmkaaqq eirstvtvnt idlgskkkdd dndltisvpk krvkdstlhl
     1861 kegmkgqlte assatskays vyrremdpev dligsgtdaa naeeksteea imsptiaimq
     1921 pilrflqllc enhnrelqnf lrhqnnktny nlvcetlqfl dcicgsttgg lgllglyine
     1981 rnvalvnqtl eslteycqgp chenqtciat hesngidiii alilndinpl gkycmdlvlq
     2041 lknnasklll aimesrhdse naerilfnmr prelvdvmkn aynqglecdq eeengddgis
     2101 pkdvghniyi lahqlarhnk tlqqmlkpgs dpdegdealr yyanhtaqie ivrhdrtmeq
     2161 ivfpvpnice fltresksrv fntterdeqg skvndffqqt edlynemkwq kkirnnpplf
     2221 wfsrhislwg sisfnlavfi nlavalfypf gddgdegtls plfsvllwia vafctamlff
     2281 iskpvgirpf lvsvilrsiy tiglgptlil lgaanlcnki vflvsfvgnr gtftrgyrav
     2341 imdmaflyhv ayvlvcmlgl cvheffysfl lfdlvyreet llnviksvtr ngrsiiltav
     2401 lalilvylfs iigflflkdd fimevdrlki rtpvtgigev ptttltsmvg acakencsts
     2461 ipiinpgeee edgiertcdt llmcivtvln qglrngggvg dvlrkpskde plfaarvvyd
     2521 llfyfiviii vlnlifgvii dtfadlrsek qkkeeilktt cficglerdk fdnktvsfee
     2581 hiksehnmwh ylyfivlvkv kdpteytgpe syvaqmivek nldwfprmra mslvsnegds
     2641 eqneirnlqe rlestmslvk qlssqlaelk eqmteqrknk qrlgflgsnt phvnhhmppp
//
LOCUS       XP_053928485             935 aa            linear   VRT 09-MAR-2023
DEFINITION  peripheral plasma membrane protein CASK isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053928485
VERSION     XP_053928485.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072510.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..935
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..935
                     /product="peripheral plasma membrane protein CASK isoform
                     X1"
                     /calculated_mol_wt=106133
     Region          8..307
                     /region_name="STKc_CASK"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Calcium/calmodulin-dependent serine protein kinase;
                     cd14094"
                     /db_xref="CDD:270996"
     Site            order(18..20,22,24,26,39,41,75,91..94,98,100,140..141,143,
                     145..146,148,162,165,180..184,186)
                     /site_type="active"
                     /db_xref="CDD:270996"
     Site            order(18..20,24,26,39,41,75,91..94,145..146,148,162)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270996"
     Site            order(22,98,100,140..141,143,145,165,180..184,186)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270996"
     Site            161..184
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270996"
     Region          348..401
                     /region_name="L27"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; smart00569"
                     /db_xref="CDD:197794"
     Region          406..456
                     /region_name="L27"
                     /note="L27 domain; pfam02828"
                     /db_xref="CDD:460717"
     Region          489..569
                     /region_name="PDZ_CASK-like"
                     /note="PDZ domain of peripheral plasma membrane protein
                     CASK, Caenorhabditis Lin-2, and related domains; cd10831"
                     /db_xref="CDD:467267"
     Site            order(500..506,516,519,549,553,556..557)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467267"
     Region          616..677
                     /region_name="SH3_CASK"
                     /note="Src Homology 3 domain of
                     Calcium/calmodulin-dependent Serine protein Kinase;
                     cd12081"
                     /db_xref="CDD:213014"
     Site            order(618,642..643)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:213014"
     Site            order(621,623,626,637,655..656,673,675..676)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:213014"
     Region          738..920
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..935
                     /gene="CASK"
                     /coded_by="XM_054072510.1:137..2944"
                     /db_xref="GeneID:104057329"
ORIGIN      
        1 madddvlfed vyelcevigk gpfsvvrrci nretgqqfav kivdvakfts spglstedlk
       61 reasichmlk hphivellet yssdgmlymv fefmdgadlc feivkradag fvyseavash
      121 ymrqilealr ychdnniihr dvkphcvlla skensapvkl ggfgvaiqlg esglvaggrv
      181 gtphfmapev vkrepygkpv dvwgcgvilf illsgclpfy gtkerlfegi ikgkykmnpr
      241 qwshisesak dlvrrmlmld paeritvyea lnhpwlkerd ryaykihlpe tveqlrkfna
      301 rrklkgavla avsshkfnsf ygdppeelpd fsedptssgl laaeravsqv ldsleeihal
      361 tdcsekdldf lhsvfqdqhl htlldlydki ntksspqirn ppsdavqrak evleeiscyp
      421 enndakelkr iltqphfmal lqthdvvahe vysdealrvt ppptspylng dspesangdm
      481 dmenvtrvrl vqfqkntdep mgitlkmnel nhcivarimh ggmihrqgtl hvgdeirein
      541 gisvanqtve qlqkmlremr gsitfkivps yrtqssscer dspstsrqsp anghsstnns
      601 vsdlpsttqp kgrqiyvraq feydpakddl ipckeagirf rvgdiiqiis kddhnwwqgk
      661 lenskngtag lipspelqew rvaciamekt kqeqqasctw fgkkkkqykd kylakhnavf
      721 dqldlvtyee vvklpafkrk tlvllgahgv grrhikntli tkhpdrfayp iphttrppkk
      781 deengknyyf vshdqmmqdi snneyleygs hedamygtkl etirkiheqg liaildvepq
      841 alkvlrtaef apfvvfiaap titpginelp kwcrklpdes lqrlqkesei lqrtyahyfd
      901 ltiinneide tirhleeaie lvctasqwvp vswvy
//
LOCUS       XP_053928495             930 aa            linear   VRT 09-MAR-2023
DEFINITION  peripheral plasma membrane protein CASK isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053928495
VERSION     XP_053928495.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072520.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..930
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..930
                     /product="peripheral plasma membrane protein CASK isoform
                     X2"
                     /calculated_mol_wt=105530
     Region          8..307
                     /region_name="STKc_CASK"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Calcium/calmodulin-dependent serine protein kinase;
                     cd14094"
                     /db_xref="CDD:270996"
     Site            order(18..20,22,24,26,39,41,75,91..94,98,100,140..141,143,
                     145..146,148,162,165,180..184,186)
                     /site_type="active"
                     /db_xref="CDD:270996"
     Site            order(18..20,24,26,39,41,75,91..94,145..146,148,162)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270996"
     Site            order(22,98,100,140..141,143,145,165,180..184,186)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270996"
     Site            161..184
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270996"
     Region          348..401
                     /region_name="L27"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; smart00569"
                     /db_xref="CDD:197794"
     Region          406..456
                     /region_name="L27"
                     /note="L27 domain; pfam02828"
                     /db_xref="CDD:460717"
     Region          489..569
                     /region_name="PDZ_CASK-like"
                     /note="PDZ domain of peripheral plasma membrane protein
                     CASK, Caenorhabditis Lin-2, and related domains; cd10831"
                     /db_xref="CDD:467267"
     Site            order(500..506,516,519,549,553,556..557)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467267"
     Region          616..677
                     /region_name="SH3_CASK"
                     /note="Src Homology 3 domain of
                     Calcium/calmodulin-dependent Serine protein Kinase;
                     cd12081"
                     /db_xref="CDD:213014"
     Site            order(618,642..643)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:213014"
     Site            order(621,623,626,637,655..656,673,675..676)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:213014"
     Region          733..915
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..930
                     /gene="CASK"
                     /coded_by="XM_054072520.1:137..2929"
                     /db_xref="GeneID:104057329"
ORIGIN      
        1 madddvlfed vyelcevigk gpfsvvrrci nretgqqfav kivdvakfts spglstedlk
       61 reasichmlk hphivellet yssdgmlymv fefmdgadlc feivkradag fvyseavash
      121 ymrqilealr ychdnniihr dvkphcvlla skensapvkl ggfgvaiqlg esglvaggrv
      181 gtphfmapev vkrepygkpv dvwgcgvilf illsgclpfy gtkerlfegi ikgkykmnpr
      241 qwshisesak dlvrrmlmld paeritvyea lnhpwlkerd ryaykihlpe tveqlrkfna
      301 rrklkgavla avsshkfnsf ygdppeelpd fsedptssgl laaeravsqv ldsleeihal
      361 tdcsekdldf lhsvfqdqhl htlldlydki ntksspqirn ppsdavqrak evleeiscyp
      421 enndakelkr iltqphfmal lqthdvvahe vysdealrvt ppptspylng dspesangdm
      481 dmenvtrvrl vqfqkntdep mgitlkmnel nhcivarimh ggmihrqgtl hvgdeirein
      541 gisvanqtve qlqkmlremr gsitfkivps yrtqssscer dspstsrqsp anghsstnns
      601 vsdlpsttqp kgrqiyvraq feydpakddl ipckeagirf rvgdiiqiis kddhnwwqgk
      661 lenskngtag lipspelqew rvaciamekt kqeqqasctw fgkkkkqykd kylakhnadl
      721 vtyeevvklp afkrktlvll gahgvgrrhi kntlitkhpd rfaypiphtt rppkkdeeng
      781 knyyfvshdq mmqdisnney leygshedam ygtkletirk iheqgliail dvepqalkvl
      841 rtaefapfvv fiaaptitpg inelpkwcrk lpdeslqrlq keseilqrty ahyfdltiin
      901 neidetirhl eeaielvcta sqwvpvswvy
//
LOCUS       XP_053928502             929 aa            linear   VRT 09-MAR-2023
DEFINITION  peripheral plasma membrane protein CASK isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053928502
VERSION     XP_053928502.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072527.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..929
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..929
                     /product="peripheral plasma membrane protein CASK isoform
                     X3"
                     /calculated_mol_wt=105479
     Region          8..307
                     /region_name="STKc_CASK"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Calcium/calmodulin-dependent serine protein kinase;
                     cd14094"
                     /db_xref="CDD:270996"
     Site            order(18..20,22,24,26,39,41,75,91..94,98,100,140..141,143,
                     145..146,148,162,165,180..184,186)
                     /site_type="active"
                     /db_xref="CDD:270996"
     Site            order(18..20,24,26,39,41,75,91..94,145..146,148,162)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270996"
     Site            order(22,98,100,140..141,143,145,165,180..184,186)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270996"
     Site            161..184
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270996"
     Region          342..395
                     /region_name="L27"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; smart00569"
                     /db_xref="CDD:197794"
     Region          400..450
                     /region_name="L27"
                     /note="L27 domain; pfam02828"
                     /db_xref="CDD:460717"
     Region          483..563
                     /region_name="PDZ_CASK-like"
                     /note="PDZ domain of peripheral plasma membrane protein
                     CASK, Caenorhabditis Lin-2, and related domains; cd10831"
                     /db_xref="CDD:467267"
     Site            order(494..500,510,513,543,547,550..551)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467267"
     Region          610..671
                     /region_name="SH3_CASK"
                     /note="Src Homology 3 domain of
                     Calcium/calmodulin-dependent Serine protein Kinase;
                     cd12081"
                     /db_xref="CDD:213014"
     Site            order(612,636..637)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:213014"
     Site            order(615,617,620,631,649..650,667,669..670)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:213014"
     Region          732..914
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..929
                     /gene="CASK"
                     /coded_by="XM_054072527.1:137..2926"
                     /db_xref="GeneID:104057329"
ORIGIN      
        1 madddvlfed vyelcevigk gpfsvvrrci nretgqqfav kivdvakfts spglstedlk
       61 reasichmlk hphivellet yssdgmlymv fefmdgadlc feivkradag fvyseavash
      121 ymrqilealr ychdnniihr dvkphcvlla skensapvkl ggfgvaiqlg esglvaggrv
      181 gtphfmapev vkrepygkpv dvwgcgvilf illsgclpfy gtkerlfegi ikgkykmnpr
      241 qwshisesak dlvrrmlmld paeritvyea lnhpwlkerd ryaykihlpe tveqlrkfna
      301 rrklkgavla avsshkfnsf ygdppeelpd fsedptssga vsqvldslee ihaltdcsek
      361 dldflhsvfq dqhlhtlldl ydkintkssp qirnppsdav qrakevleei scypenndak
      421 elkriltqph fmallqthdv vahevysdea lrvtppptsp ylngdspesa ngdmdmenvt
      481 rvrlvqfqkn tdepmgitlk mnelnhciva rimhggmihr qgtlhvgdei reingisvan
      541 qtveqlqkml remrgsitfk ivpsyrtqss scerdspsts rqspanghss tnnsvsdlps
      601 ttqpkgrqiy vraqfeydpa kddlipckea girfrvgdii qiiskddhnw wqgklenskn
      661 gtaglipspe lqewrvacia mektkqeqqa sctwfgkkkk qykdkylakh navfdqldlv
      721 tyeevvklpa fkrktlvllg ahgvgrrhik ntlitkhpdr faypiphttr ppkkdeengk
      781 nyyfvshdqm mqdisnneyl eygshedamy gtkletirki heqgliaild vepqalkvlr
      841 taefapfvvf iaaptitpgi nelpkwcrkl pdeslqrlqk eseilqrtya hyfdltiinn
      901 eidetirhle eaielvctas qwvpvswvy
//
LOCUS       XP_053928507             926 aa            linear   VRT 09-MAR-2023
DEFINITION  peripheral plasma membrane protein CASK isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053928507
VERSION     XP_053928507.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072532.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..926
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..926
                     /product="peripheral plasma membrane protein CASK isoform
                     X4"
                     /calculated_mol_wt=105010
     Region          8..307
                     /region_name="STKc_CASK"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Calcium/calmodulin-dependent serine protein kinase;
                     cd14094"
                     /db_xref="CDD:270996"
     Site            order(18..20,22,24,26,39,41,75,91..94,98,100,140..141,143,
                     145..146,148,162,165,180..184,186)
                     /site_type="active"
                     /db_xref="CDD:270996"
     Site            order(18..20,24,26,39,41,75,91..94,145..146,148,162)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270996"
     Site            order(22,98,100,140..141,143,145,165,180..184,186)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270996"
     Site            161..184
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270996"
     Region          348..401
                     /region_name="L27"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; smart00569"
                     /db_xref="CDD:197794"
     Region          406..456
                     /region_name="L27"
                     /note="L27 domain; pfam02828"
                     /db_xref="CDD:460717"
     Region          489..569
                     /region_name="PDZ_CASK-like"
                     /note="PDZ domain of peripheral plasma membrane protein
                     CASK, Caenorhabditis Lin-2, and related domains; cd10831"
                     /db_xref="CDD:467267"
     Site            order(500..506,516,519,549,553,556..557)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467267"
     Region          616..677
                     /region_name="SH3_CASK"
                     /note="Src Homology 3 domain of
                     Calcium/calmodulin-dependent Serine protein Kinase;
                     cd12081"
                     /db_xref="CDD:213014"
     Site            order(618,642..643)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:213014"
     Site            order(621,623,626,637,655..656,673,675..676)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:213014"
     Region          738..911
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..926
                     /gene="CASK"
                     /coded_by="XM_054072532.1:137..2917"
                     /db_xref="GeneID:104057329"
ORIGIN      
        1 madddvlfed vyelcevigk gpfsvvrrci nretgqqfav kivdvakfts spglstedlk
       61 reasichmlk hphivellet yssdgmlymv fefmdgadlc feivkradag fvyseavash
      121 ymrqilealr ychdnniihr dvkphcvlla skensapvkl ggfgvaiqlg esglvaggrv
      181 gtphfmapev vkrepygkpv dvwgcgvilf illsgclpfy gtkerlfegi ikgkykmnpr
      241 qwshisesak dlvrrmlmld paeritvyea lnhpwlkerd ryaykihlpe tveqlrkfna
      301 rrklkgavla avsshkfnsf ygdppeelpd fsedptssgl laaeravsqv ldsleeihal
      361 tdcsekdldf lhsvfqdqhl htlldlydki ntksspqirn ppsdavqrak evleeiscyp
      421 enndakelkr iltqphfmal lqthdvvahe vysdealrvt ppptspylng dspesangdm
      481 dmenvtrvrl vqfqkntdep mgitlkmnel nhcivarimh ggmihrqgtl hvgdeirein
      541 gisvanqtve qlqkmlremr gsitfkivps yrtqssscer dspstsrqsp anghsstnns
      601 vsdlpsttqp kgrqiyvraq feydpakddl ipckeagirf rvgdiiqiis kddhnwwqgk
      661 lenskngtag lipspelqew rvaciamekt kqeqqasctw fgkkkkqykd kylakhnavf
      721 dqldlvtyee vvklpafkrk tlvllgahgv grrhikntli tkhpdrfayp iphttrppkk
      781 deengknyyf vshdqmmqdi snneyleygs hedamygtkl etirkiheqg liaildvepq
      841 alkvlrtaef apfvvfiaap titpginede slqrlqkese ilqrtyahyf dltiinneid
      901 etirhleeai elvctasqwv pvswvy
//
LOCUS       XP_053928514             923 aa            linear   VRT 09-MAR-2023
DEFINITION  peripheral plasma membrane protein CASK isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053928514
VERSION     XP_053928514.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072539.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..923
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..923
                     /product="peripheral plasma membrane protein CASK isoform
                     X5"
                     /calculated_mol_wt=104823
     Region          8..307
                     /region_name="STKc_CASK"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Calcium/calmodulin-dependent serine protein kinase;
                     cd14094"
                     /db_xref="CDD:270996"
     Site            order(18..20,22,24,26,39,41,75,91..94,98,100,140..141,143,
                     145..146,148,162,165,180..184,186)
                     /site_type="active"
                     /db_xref="CDD:270996"
     Site            order(18..20,24,26,39,41,75,91..94,145..146,148,162)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270996"
     Site            order(22,98,100,140..141,143,145,165,180..184,186)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270996"
     Site            161..184
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270996"
     Region          348..401
                     /region_name="L27"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; smart00569"
                     /db_xref="CDD:197794"
     Region          406..456
                     /region_name="L27"
                     /note="L27 domain; pfam02828"
                     /db_xref="CDD:460717"
     Region          489..569
                     /region_name="PDZ_CASK-like"
                     /note="PDZ domain of peripheral plasma membrane protein
                     CASK, Caenorhabditis Lin-2, and related domains; cd10831"
                     /db_xref="CDD:467267"
     Site            order(500..506,516,519,549,553,556..557)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467267"
     Region          604..665
                     /region_name="SH3_CASK"
                     /note="Src Homology 3 domain of
                     Calcium/calmodulin-dependent Serine protein Kinase;
                     cd12081"
                     /db_xref="CDD:213014"
     Site            order(606,630..631)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:213014"
     Site            order(609,611,614,625,643..644,661,663..664)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:213014"
     Region          726..908
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..923
                     /gene="CASK"
                     /coded_by="XM_054072539.1:137..2908"
                     /db_xref="GeneID:104057329"
ORIGIN      
        1 madddvlfed vyelcevigk gpfsvvrrci nretgqqfav kivdvakfts spglstedlk
       61 reasichmlk hphivellet yssdgmlymv fefmdgadlc feivkradag fvyseavash
      121 ymrqilealr ychdnniihr dvkphcvlla skensapvkl ggfgvaiqlg esglvaggrv
      181 gtphfmapev vkrepygkpv dvwgcgvilf illsgclpfy gtkerlfegi ikgkykmnpr
      241 qwshisesak dlvrrmlmld paeritvyea lnhpwlkerd ryaykihlpe tveqlrkfna
      301 rrklkgavla avsshkfnsf ygdppeelpd fsedptssgl laaeravsqv ldsleeihal
      361 tdcsekdldf lhsvfqdqhl htlldlydki ntksspqirn ppsdavqrak evleeiscyp
      421 enndakelkr iltqphfmal lqthdvvahe vysdealrvt ppptspylng dspesangdm
      481 dmenvtrvrl vqfqkntdep mgitlkmnel nhcivarimh ggmihrqgtl hvgdeirein
      541 gisvanqtve qlqkmlremr gsitfkivps yrtqssscer dspstsrqsp anghsstnns
      601 vsiyvraqfe ydpakddlip ckeagirfrv gdiiqiiskd dhnwwqgkle nskngtagli
      661 pspelqewrv aciamektkq eqqasctwfg kkkkqykdky lakhnavfdq ldlvtyeevv
      721 klpafkrktl vllgahgvgr rhikntlitk hpdrfaypip httrppkkde engknyyfvs
      781 hdqmmqdisn neyleygshe damygtklet irkiheqgli aildvepqal kvlrtaefap
      841 fvvfiaapti tpginelpkw crklpdeslq rlqkeseilq rtyahyfdlt iinneideti
      901 rhleeaielv ctasqwvpvs wvy
//
LOCUS       XP_053928523             921 aa            linear   VRT 09-MAR-2023
DEFINITION  peripheral plasma membrane protein CASK isoform X6 [Cuculus
            canorus].
ACCESSION   XP_053928523
VERSION     XP_053928523.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072548.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..921
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..921
                     /product="peripheral plasma membrane protein CASK isoform
                     X6"
                     /calculated_mol_wt=104407
     Region          8..307
                     /region_name="STKc_CASK"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Calcium/calmodulin-dependent serine protein kinase;
                     cd14094"
                     /db_xref="CDD:270996"
     Site            order(18..20,22,24,26,39,41,75,91..94,98,100,140..141,143,
                     145..146,148,162,165,180..184,186)
                     /site_type="active"
                     /db_xref="CDD:270996"
     Site            order(18..20,24,26,39,41,75,91..94,145..146,148,162)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270996"
     Site            order(22,98,100,140..141,143,145,165,180..184,186)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270996"
     Site            161..184
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270996"
     Region          348..401
                     /region_name="L27"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; smart00569"
                     /db_xref="CDD:197794"
     Region          406..456
                     /region_name="L27"
                     /note="L27 domain; pfam02828"
                     /db_xref="CDD:460717"
     Region          489..569
                     /region_name="PDZ_CASK-like"
                     /note="PDZ domain of peripheral plasma membrane protein
                     CASK, Caenorhabditis Lin-2, and related domains; cd10831"
                     /db_xref="CDD:467267"
     Site            order(500..506,516,519,549,553,556..557)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467267"
     Region          616..677
                     /region_name="SH3_CASK"
                     /note="Src Homology 3 domain of
                     Calcium/calmodulin-dependent Serine protein Kinase;
                     cd12081"
                     /db_xref="CDD:213014"
     Site            order(618,642..643)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:213014"
     Site            order(621,623,626,637,655..656,673,675..676)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:213014"
     Region          733..906
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..921
                     /gene="CASK"
                     /coded_by="XM_054072548.1:137..2902"
                     /db_xref="GeneID:104057329"
ORIGIN      
        1 madddvlfed vyelcevigk gpfsvvrrci nretgqqfav kivdvakfts spglstedlk
       61 reasichmlk hphivellet yssdgmlymv fefmdgadlc feivkradag fvyseavash
      121 ymrqilealr ychdnniihr dvkphcvlla skensapvkl ggfgvaiqlg esglvaggrv
      181 gtphfmapev vkrepygkpv dvwgcgvilf illsgclpfy gtkerlfegi ikgkykmnpr
      241 qwshisesak dlvrrmlmld paeritvyea lnhpwlkerd ryaykihlpe tveqlrkfna
      301 rrklkgavla avsshkfnsf ygdppeelpd fsedptssgl laaeravsqv ldsleeihal
      361 tdcsekdldf lhsvfqdqhl htlldlydki ntksspqirn ppsdavqrak evleeiscyp
      421 enndakelkr iltqphfmal lqthdvvahe vysdealrvt ppptspylng dspesangdm
      481 dmenvtrvrl vqfqkntdep mgitlkmnel nhcivarimh ggmihrqgtl hvgdeirein
      541 gisvanqtve qlqkmlremr gsitfkivps yrtqssscer dspstsrqsp anghsstnns
      601 vsdlpsttqp kgrqiyvraq feydpakddl ipckeagirf rvgdiiqiis kddhnwwqgk
      661 lenskngtag lipspelqew rvaciamekt kqeqqasctw fgkkkkqykd kylakhnadl
      721 vtyeevvklp afkrktlvll gahgvgrrhi kntlitkhpd rfaypiphtt rppkkdeeng
      781 knyyfvshdq mmqdisnney leygshedam ygtkletirk iheqgliail dvepqalkvl
      841 rtaefapfvv fiaaptitpg inedeslqrl qkeseilqrt yahyfdltii nneidetirh
      901 leeaielvct asqwvpvswv y
//
LOCUS       XP_053928534             920 aa            linear   VRT 09-MAR-2023
DEFINITION  peripheral plasma membrane protein CASK isoform X7 [Cuculus
            canorus].
ACCESSION   XP_053928534
VERSION     XP_053928534.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072559.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..920
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..920
                     /product="peripheral plasma membrane protein CASK isoform
                     X7"
                     /calculated_mol_wt=104356
     Region          8..307
                     /region_name="STKc_CASK"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Calcium/calmodulin-dependent serine protein kinase;
                     cd14094"
                     /db_xref="CDD:270996"
     Site            order(18..20,22,24,26,39,41,75,91..94,98,100,140..141,143,
                     145..146,148,162,165,180..184,186)
                     /site_type="active"
                     /db_xref="CDD:270996"
     Site            order(18..20,24,26,39,41,75,91..94,145..146,148,162)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270996"
     Site            order(22,98,100,140..141,143,145,165,180..184,186)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270996"
     Site            161..184
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270996"
     Region          342..395
                     /region_name="L27"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; smart00569"
                     /db_xref="CDD:197794"
     Region          400..450
                     /region_name="L27"
                     /note="L27 domain; pfam02828"
                     /db_xref="CDD:460717"
     Region          483..563
                     /region_name="PDZ_CASK-like"
                     /note="PDZ domain of peripheral plasma membrane protein
                     CASK, Caenorhabditis Lin-2, and related domains; cd10831"
                     /db_xref="CDD:467267"
     Site            order(494..500,510,513,543,547,550..551)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467267"
     Region          610..671
                     /region_name="SH3_CASK"
                     /note="Src Homology 3 domain of
                     Calcium/calmodulin-dependent Serine protein Kinase;
                     cd12081"
                     /db_xref="CDD:213014"
     Site            order(612,636..637)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:213014"
     Site            order(615,617,620,631,649..650,667,669..670)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:213014"
     Region          732..905
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..920
                     /gene="CASK"
                     /coded_by="XM_054072559.1:137..2899"
                     /db_xref="GeneID:104057329"
ORIGIN      
        1 madddvlfed vyelcevigk gpfsvvrrci nretgqqfav kivdvakfts spglstedlk
       61 reasichmlk hphivellet yssdgmlymv fefmdgadlc feivkradag fvyseavash
      121 ymrqilealr ychdnniihr dvkphcvlla skensapvkl ggfgvaiqlg esglvaggrv
      181 gtphfmapev vkrepygkpv dvwgcgvilf illsgclpfy gtkerlfegi ikgkykmnpr
      241 qwshisesak dlvrrmlmld paeritvyea lnhpwlkerd ryaykihlpe tveqlrkfna
      301 rrklkgavla avsshkfnsf ygdppeelpd fsedptssga vsqvldslee ihaltdcsek
      361 dldflhsvfq dqhlhtlldl ydkintkssp qirnppsdav qrakevleei scypenndak
      421 elkriltqph fmallqthdv vahevysdea lrvtppptsp ylngdspesa ngdmdmenvt
      481 rvrlvqfqkn tdepmgitlk mnelnhciva rimhggmihr qgtlhvgdei reingisvan
      541 qtveqlqkml remrgsitfk ivpsyrtqss scerdspsts rqspanghss tnnsvsdlps
      601 ttqpkgrqiy vraqfeydpa kddlipckea girfrvgdii qiiskddhnw wqgklenskn
      661 gtaglipspe lqewrvacia mektkqeqqa sctwfgkkkk qykdkylakh navfdqldlv
      721 tyeevvklpa fkrktlvllg ahgvgrrhik ntlitkhpdr faypiphttr ppkkdeengk
      781 nyyfvshdqm mqdisnneyl eygshedamy gtkletirki heqgliaild vepqalkvlr
      841 taefapfvvf iaaptitpgi nedeslqrlq keseilqrty ahyfdltiin neidetirhl
      901 eeaielvcta sqwvpvswvy
//
LOCUS       XP_053928541             912 aa            linear   VRT 09-MAR-2023
DEFINITION  peripheral plasma membrane protein CASK isoform X8 [Cuculus
            canorus].
ACCESSION   XP_053928541
VERSION     XP_053928541.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072566.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..912
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..912
                     /product="peripheral plasma membrane protein CASK isoform
                     X8"
                     /calculated_mol_wt=103777
     Region          8..307
                     /region_name="STKc_CASK"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Calcium/calmodulin-dependent serine protein kinase;
                     cd14094"
                     /db_xref="CDD:270996"
     Site            order(18..20,22,24,26,39,41,75,91..94,98,100,140..141,143,
                     145..146,148,162,165,180..184,186)
                     /site_type="active"
                     /db_xref="CDD:270996"
     Site            order(18..20,24,26,39,41,75,91..94,145..146,148,162)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270996"
     Site            order(22,98,100,140..141,143,145,165,180..184,186)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270996"
     Site            161..184
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270996"
     Region          348..401
                     /region_name="L27"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; smart00569"
                     /db_xref="CDD:197794"
     Region          406..456
                     /region_name="L27"
                     /note="L27 domain; pfam02828"
                     /db_xref="CDD:460717"
     Region          489..569
                     /region_name="PDZ_CASK-like"
                     /note="PDZ domain of peripheral plasma membrane protein
                     CASK, Caenorhabditis Lin-2, and related domains; cd10831"
                     /db_xref="CDD:467267"
     Site            order(500..506,516,519,549,553,556..557)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467267"
     Region          593..654
                     /region_name="SH3_CASK"
                     /note="Src Homology 3 domain of
                     Calcium/calmodulin-dependent Serine protein Kinase;
                     cd12081"
                     /db_xref="CDD:213014"
     Site            order(595,619..620)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:213014"
     Site            order(598,600,603,614,632..633,650,652..653)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:213014"
     Region          715..897
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..912
                     /gene="CASK"
                     /coded_by="XM_054072566.1:137..2875"
                     /db_xref="GeneID:104057329"
ORIGIN      
        1 madddvlfed vyelcevigk gpfsvvrrci nretgqqfav kivdvakfts spglstedlk
       61 reasichmlk hphivellet yssdgmlymv fefmdgadlc feivkradag fvyseavash
      121 ymrqilealr ychdnniihr dvkphcvlla skensapvkl ggfgvaiqlg esglvaggrv
      181 gtphfmapev vkrepygkpv dvwgcgvilf illsgclpfy gtkerlfegi ikgkykmnpr
      241 qwshisesak dlvrrmlmld paeritvyea lnhpwlkerd ryaykihlpe tveqlrkfna
      301 rrklkgavla avsshkfnsf ygdppeelpd fsedptssgl laaeravsqv ldsleeihal
      361 tdcsekdldf lhsvfqdqhl htlldlydki ntksspqirn ppsdavqrak evleeiscyp
      421 enndakelkr iltqphfmal lqthdvvahe vysdealrvt ppptspylng dspesangdm
      481 dmenvtrvrl vqfqkntdep mgitlkmnel nhcivarimh ggmihrqgtl hvgdeirein
      541 gisvanqtve qlqkmlremr gsitfkivps yrtqsssced lpsttqpkgr qiyvraqfey
      601 dpakddlipc keagirfrvg diiqiiskdd hnwwqgklen skngtaglip spelqewrva
      661 ciamektkqe qqasctwfgk kkkqykdkyl akhnavfdql dlvtyeevvk lpafkrktlv
      721 llgahgvgrr hikntlitkh pdrfaypiph ttrppkkdee ngknyyfvsh dqmmqdisnn
      781 eyleygshed amygtkleti rkiheqglia ildvepqalk vlrtaefapf vvfiaaptit
      841 pginelpkwc rklpdeslqr lqkeseilqr tyahyfdlti inneidetir hleeaielvc
      901 tasqwvpvsw vy
//
LOCUS       XP_053928547             909 aa            linear   VRT 09-MAR-2023
DEFINITION  peripheral plasma membrane protein CASK isoform X9 [Cuculus
            canorus].
ACCESSION   XP_053928547
VERSION     XP_053928547.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072572.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..909
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..909
                     /product="peripheral plasma membrane protein CASK isoform
                     X9"
                     /calculated_mol_wt=103098
     Region          8..307
                     /region_name="STKc_CASK"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Calcium/calmodulin-dependent serine protein kinase;
                     cd14094"
                     /db_xref="CDD:270996"
     Site            order(18..20,22,24,26,39,41,75,91..94,98,100,140..141,143,
                     145..146,148,162,165,180..184,186)
                     /site_type="active"
                     /db_xref="CDD:270996"
     Site            order(18..20,24,26,39,41,75,91..94,145..146,148,162)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270996"
     Site            order(22,98,100,140..141,143,145,165,180..184,186)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270996"
     Site            161..184
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270996"
     Region          348..401
                     /region_name="L27"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; smart00569"
                     /db_xref="CDD:197794"
     Region          406..456
                     /region_name="L27"
                     /note="L27 domain; pfam02828"
                     /db_xref="CDD:460717"
     Region          489..569
                     /region_name="PDZ_CASK-like"
                     /note="PDZ domain of peripheral plasma membrane protein
                     CASK, Caenorhabditis Lin-2, and related domains; cd10831"
                     /db_xref="CDD:467267"
     Site            order(500..506,516,519,549,553,556..557)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467267"
     Region          604..665
                     /region_name="SH3_CASK"
                     /note="Src Homology 3 domain of
                     Calcium/calmodulin-dependent Serine protein Kinase;
                     cd12081"
                     /db_xref="CDD:213014"
     Site            order(606,630..631)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:213014"
     Site            order(609,611,614,625,643..644,661,663..664)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:213014"
     Region          721..894
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..909
                     /gene="CASK"
                     /coded_by="XM_054072572.1:137..2866"
                     /db_xref="GeneID:104057329"
ORIGIN      
        1 madddvlfed vyelcevigk gpfsvvrrci nretgqqfav kivdvakfts spglstedlk
       61 reasichmlk hphivellet yssdgmlymv fefmdgadlc feivkradag fvyseavash
      121 ymrqilealr ychdnniihr dvkphcvlla skensapvkl ggfgvaiqlg esglvaggrv
      181 gtphfmapev vkrepygkpv dvwgcgvilf illsgclpfy gtkerlfegi ikgkykmnpr
      241 qwshisesak dlvrrmlmld paeritvyea lnhpwlkerd ryaykihlpe tveqlrkfna
      301 rrklkgavla avsshkfnsf ygdppeelpd fsedptssgl laaeravsqv ldsleeihal
      361 tdcsekdldf lhsvfqdqhl htlldlydki ntksspqirn ppsdavqrak evleeiscyp
      421 enndakelkr iltqphfmal lqthdvvahe vysdealrvt ppptspylng dspesangdm
      481 dmenvtrvrl vqfqkntdep mgitlkmnel nhcivarimh ggmihrqgtl hvgdeirein
      541 gisvanqtve qlqkmlremr gsitfkivps yrtqssscer dspstsrqsp anghsstnns
      601 vsiyvraqfe ydpakddlip ckeagirfrv gdiiqiiskd dhnwwqgkle nskngtagli
      661 pspelqewrv aciamektkq eqqasctwfg kkkkqykdky lakhnadlvt yeevvklpaf
      721 krktlvllga hgvgrrhikn tlitkhpdrf aypiphttrp pkkdeengkn yyfvshdqmm
      781 qdisnneyle ygshedamyg tkletirkih eqgliaildv epqalkvlrt aefapfvvfi
      841 aaptitpgin edeslqrlqk eseilqrtya hyfdltiinn eidetirhle eaielvctas
      901 qwvpvswvy
//
LOCUS       XP_053928553             900 aa            linear   VRT 09-MAR-2023
DEFINITION  peripheral plasma membrane protein CASK isoform X10 [Cuculus
            canorus].
ACCESSION   XP_053928553
VERSION     XP_053928553.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072578.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..900
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..900
                     /product="peripheral plasma membrane protein CASK isoform
                     X10"
                     /calculated_mol_wt=102468
     Region          8..307
                     /region_name="STKc_CASK"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Calcium/calmodulin-dependent serine protein kinase;
                     cd14094"
                     /db_xref="CDD:270996"
     Site            order(18..20,22,24,26,39,41,75,91..94,98,100,140..141,143,
                     145..146,148,162,165,180..184,186)
                     /site_type="active"
                     /db_xref="CDD:270996"
     Site            order(18..20,24,26,39,41,75,91..94,145..146,148,162)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270996"
     Site            order(22,98,100,140..141,143,145,165,180..184,186)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270996"
     Site            161..184
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270996"
     Region          348..401
                     /region_name="L27"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; smart00569"
                     /db_xref="CDD:197794"
     Region          406..456
                     /region_name="L27"
                     /note="L27 domain; pfam02828"
                     /db_xref="CDD:460717"
     Region          489..569
                     /region_name="PDZ_CASK-like"
                     /note="PDZ domain of peripheral plasma membrane protein
                     CASK, Caenorhabditis Lin-2, and related domains; cd10831"
                     /db_xref="CDD:467267"
     Site            order(500..506,516,519,549,553,556..557)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467267"
     Region          581..642
                     /region_name="SH3_CASK"
                     /note="Src Homology 3 domain of
                     Calcium/calmodulin-dependent Serine protein Kinase;
                     cd12081"
                     /db_xref="CDD:213014"
     Site            order(583,607..608)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:213014"
     Site            order(586,588,591,602,620..621,638,640..641)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:213014"
     Region          703..885
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..900
                     /gene="CASK"
                     /coded_by="XM_054072578.1:137..2839"
                     /db_xref="GeneID:104057329"
ORIGIN      
        1 madddvlfed vyelcevigk gpfsvvrrci nretgqqfav kivdvakfts spglstedlk
       61 reasichmlk hphivellet yssdgmlymv fefmdgadlc feivkradag fvyseavash
      121 ymrqilealr ychdnniihr dvkphcvlla skensapvkl ggfgvaiqlg esglvaggrv
      181 gtphfmapev vkrepygkpv dvwgcgvilf illsgclpfy gtkerlfegi ikgkykmnpr
      241 qwshisesak dlvrrmlmld paeritvyea lnhpwlkerd ryaykihlpe tveqlrkfna
      301 rrklkgavla avsshkfnsf ygdppeelpd fsedptssgl laaeravsqv ldsleeihal
      361 tdcsekdldf lhsvfqdqhl htlldlydki ntksspqirn ppsdavqrak evleeiscyp
      421 enndakelkr iltqphfmal lqthdvvahe vysdealrvt ppptspylng dspesangdm
      481 dmenvtrvrl vqfqkntdep mgitlkmnel nhcivarimh ggmihrqgtl hvgdeirein
      541 gisvanqtve qlqkmlremr gsitfkivps yrtqssscei yvraqfeydp akddlipcke
      601 agirfrvgdi iqiiskddhn wwqgklensk ngtaglipsp elqewrvaci amektkqeqq
      661 asctwfgkkk kqykdkylak hnavfdqldl vtyeevvklp afkrktlvll gahgvgrrhi
      721 kntlitkhpd rfaypiphtt rppkkdeeng knyyfvshdq mmqdisnney leygshedam
      781 ygtkletirk iheqgliail dvepqalkvl rtaefapfvv fiaaptitpg inelpkwcrk
      841 lpdeslqrlq keseilqrty ahyfdltiin neidetirhl eeaielvcta sqwvpvswvy
//
LOCUS       XP_053928559             898 aa            linear   VRT 09-MAR-2023
DEFINITION  peripheral plasma membrane protein CASK isoform X11 [Cuculus
            canorus].
ACCESSION   XP_053928559
VERSION     XP_053928559.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072584.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..898
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..898
                     /product="peripheral plasma membrane protein CASK isoform
                     X11"
                     /calculated_mol_wt=102052
     Region          8..307
                     /region_name="STKc_CASK"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Calcium/calmodulin-dependent serine protein kinase;
                     cd14094"
                     /db_xref="CDD:270996"
     Site            order(18..20,22,24,26,39,41,75,91..94,98,100,140..141,143,
                     145..146,148,162,165,180..184,186)
                     /site_type="active"
                     /db_xref="CDD:270996"
     Site            order(18..20,24,26,39,41,75,91..94,145..146,148,162)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270996"
     Site            order(22,98,100,140..141,143,145,165,180..184,186)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270996"
     Site            161..184
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270996"
     Region          348..401
                     /region_name="L27"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; smart00569"
                     /db_xref="CDD:197794"
     Region          406..456
                     /region_name="L27"
                     /note="L27 domain; pfam02828"
                     /db_xref="CDD:460717"
     Region          489..569
                     /region_name="PDZ_CASK-like"
                     /note="PDZ domain of peripheral plasma membrane protein
                     CASK, Caenorhabditis Lin-2, and related domains; cd10831"
                     /db_xref="CDD:467267"
     Site            order(500..506,516,519,549,553,556..557)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467267"
     Region          593..654
                     /region_name="SH3_CASK"
                     /note="Src Homology 3 domain of
                     Calcium/calmodulin-dependent Serine protein Kinase;
                     cd12081"
                     /db_xref="CDD:213014"
     Site            order(595,619..620)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:213014"
     Site            order(598,600,603,614,632..633,650,652..653)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:213014"
     Region          710..883
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..898
                     /gene="CASK"
                     /coded_by="XM_054072584.1:137..2833"
                     /db_xref="GeneID:104057329"
ORIGIN      
        1 madddvlfed vyelcevigk gpfsvvrrci nretgqqfav kivdvakfts spglstedlk
       61 reasichmlk hphivellet yssdgmlymv fefmdgadlc feivkradag fvyseavash
      121 ymrqilealr ychdnniihr dvkphcvlla skensapvkl ggfgvaiqlg esglvaggrv
      181 gtphfmapev vkrepygkpv dvwgcgvilf illsgclpfy gtkerlfegi ikgkykmnpr
      241 qwshisesak dlvrrmlmld paeritvyea lnhpwlkerd ryaykihlpe tveqlrkfna
      301 rrklkgavla avsshkfnsf ygdppeelpd fsedptssgl laaeravsqv ldsleeihal
      361 tdcsekdldf lhsvfqdqhl htlldlydki ntksspqirn ppsdavqrak evleeiscyp
      421 enndakelkr iltqphfmal lqthdvvahe vysdealrvt ppptspylng dspesangdm
      481 dmenvtrvrl vqfqkntdep mgitlkmnel nhcivarimh ggmihrqgtl hvgdeirein
      541 gisvanqtve qlqkmlremr gsitfkivps yrtqsssced lpsttqpkgr qiyvraqfey
      601 dpakddlipc keagirfrvg diiqiiskdd hnwwqgklen skngtaglip spelqewrva
      661 ciamektkqe qqasctwfgk kkkqykdkyl akhnadlvty eevvklpafk rktlvllgah
      721 gvgrrhiknt litkhpdrfa ypiphttrpp kkdeengkny yfvshdqmmq disnneyley
      781 gshedamygt kletirkihe qgliaildve pqalkvlrta efapfvvfia aptitpgine
      841 deslqrlqke seilqrtyah yfdltiinne idetirhlee aielvctasq wvpvswvy
//
LOCUS       XP_053928570             897 aa            linear   VRT 09-MAR-2023
DEFINITION  peripheral plasma membrane protein CASK isoform X12 [Cuculus
            canorus].
ACCESSION   XP_053928570
VERSION     XP_053928570.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072595.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..897
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..897
                     /product="peripheral plasma membrane protein CASK isoform
                     X12"
                     /calculated_mol_wt=102001
     Region          8..307
                     /region_name="STKc_CASK"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Calcium/calmodulin-dependent serine protein kinase;
                     cd14094"
                     /db_xref="CDD:270996"
     Site            order(18..20,22,24,26,39,41,75,91..94,98,100,140..141,143,
                     145..146,148,162,165,180..184,186)
                     /site_type="active"
                     /db_xref="CDD:270996"
     Site            order(18..20,24,26,39,41,75,91..94,145..146,148,162)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270996"
     Site            order(22,98,100,140..141,143,145,165,180..184,186)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270996"
     Site            161..184
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270996"
     Region          342..395
                     /region_name="L27"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; smart00569"
                     /db_xref="CDD:197794"
     Region          400..450
                     /region_name="L27"
                     /note="L27 domain; pfam02828"
                     /db_xref="CDD:460717"
     Region          483..563
                     /region_name="PDZ_CASK-like"
                     /note="PDZ domain of peripheral plasma membrane protein
                     CASK, Caenorhabditis Lin-2, and related domains; cd10831"
                     /db_xref="CDD:467267"
     Site            order(494..500,510,513,543,547,550..551)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467267"
     Region          587..648
                     /region_name="SH3_CASK"
                     /note="Src Homology 3 domain of
                     Calcium/calmodulin-dependent Serine protein Kinase;
                     cd12081"
                     /db_xref="CDD:213014"
     Site            order(589,613..614)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:213014"
     Site            order(592,594,597,608,626..627,644,646..647)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:213014"
     Region          709..882
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..897
                     /gene="CASK"
                     /coded_by="XM_054072595.1:137..2830"
                     /db_xref="GeneID:104057329"
ORIGIN      
        1 madddvlfed vyelcevigk gpfsvvrrci nretgqqfav kivdvakfts spglstedlk
       61 reasichmlk hphivellet yssdgmlymv fefmdgadlc feivkradag fvyseavash
      121 ymrqilealr ychdnniihr dvkphcvlla skensapvkl ggfgvaiqlg esglvaggrv
      181 gtphfmapev vkrepygkpv dvwgcgvilf illsgclpfy gtkerlfegi ikgkykmnpr
      241 qwshisesak dlvrrmlmld paeritvyea lnhpwlkerd ryaykihlpe tveqlrkfna
      301 rrklkgavla avsshkfnsf ygdppeelpd fsedptssga vsqvldslee ihaltdcsek
      361 dldflhsvfq dqhlhtlldl ydkintkssp qirnppsdav qrakevleei scypenndak
      421 elkriltqph fmallqthdv vahevysdea lrvtppptsp ylngdspesa ngdmdmenvt
      481 rvrlvqfqkn tdepmgitlk mnelnhciva rimhggmihr qgtlhvgdei reingisvan
      541 qtveqlqkml remrgsitfk ivpsyrtqss scedlpsttq pkgrqiyvra qfeydpakdd
      601 lipckeagir frvgdiiqii skddhnwwqg klenskngta glipspelqe wrvaciamek
      661 tkqeqqasct wfgkkkkqyk dkylakhnav fdqldlvtye evvklpafkr ktlvllgahg
      721 vgrrhikntl itkhpdrfay piphttrppk kdeengknyy fvshdqmmqd isnneyleyg
      781 shedamygtk letirkiheq gliaildvep qalkvlrtae fapfvvfiaa ptitpgined
      841 eslqrlqkes eilqrtyahy fdltiinnei detirhleea ielvctasqw vpvswvy
//
LOCUS       XP_053928580             880 aa            linear   VRT 09-MAR-2023
DEFINITION  peripheral plasma membrane protein CASK isoform X13 [Cuculus
            canorus].
ACCESSION   XP_053928580
VERSION     XP_053928580.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072605.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..880
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..880
                     /product="peripheral plasma membrane protein CASK isoform
                     X13"
                     /calculated_mol_wt=100089
     Region          8..307
                     /region_name="STKc_CASK"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Calcium/calmodulin-dependent serine protein kinase;
                     cd14094"
                     /db_xref="CDD:270996"
     Site            order(18..20,22,24,26,39,41,75,91..94,98,100,140..141,143,
                     145..146,148,162,165,180..184,186)
                     /site_type="active"
                     /db_xref="CDD:270996"
     Site            order(18..20,24,26,39,41,75,91..94,145..146,148,162)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270996"
     Site            order(22,98,100,140..141,143,145,165,180..184,186)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270996"
     Site            161..184
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270996"
     Region          342..395
                     /region_name="L27"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; smart00569"
                     /db_xref="CDD:197794"
     Region          400..450
                     /region_name="L27"
                     /note="L27 domain; pfam02828"
                     /db_xref="CDD:460717"
     Region          483..563
                     /region_name="PDZ_CASK-like"
                     /note="PDZ domain of peripheral plasma membrane protein
                     CASK, Caenorhabditis Lin-2, and related domains; cd10831"
                     /db_xref="CDD:467267"
     Site            order(494..500,510,513,543,547,550..551)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467267"
     Region          575..636
                     /region_name="SH3_CASK"
                     /note="Src Homology 3 domain of
                     Calcium/calmodulin-dependent Serine protein Kinase;
                     cd12081"
                     /db_xref="CDD:213014"
     Site            order(577,601..602)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:213014"
     Site            order(580,582,585,596,614..615,632,634..635)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:213014"
     Region          692..865
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..880
                     /gene="CASK"
                     /coded_by="XM_054072605.1:137..2779"
                     /db_xref="GeneID:104057329"
ORIGIN      
        1 madddvlfed vyelcevigk gpfsvvrrci nretgqqfav kivdvakfts spglstedlk
       61 reasichmlk hphivellet yssdgmlymv fefmdgadlc feivkradag fvyseavash
      121 ymrqilealr ychdnniihr dvkphcvlla skensapvkl ggfgvaiqlg esglvaggrv
      181 gtphfmapev vkrepygkpv dvwgcgvilf illsgclpfy gtkerlfegi ikgkykmnpr
      241 qwshisesak dlvrrmlmld paeritvyea lnhpwlkerd ryaykihlpe tveqlrkfna
      301 rrklkgavla avsshkfnsf ygdppeelpd fsedptssga vsqvldslee ihaltdcsek
      361 dldflhsvfq dqhlhtlldl ydkintkssp qirnppsdav qrakevleei scypenndak
      421 elkriltqph fmallqthdv vahevysdea lrvtppptsp ylngdspesa ngdmdmenvt
      481 rvrlvqfqkn tdepmgitlk mnelnhciva rimhggmihr qgtlhvgdei reingisvan
      541 qtveqlqkml remrgsitfk ivpsyrtqss sceiyvraqf eydpakddli pckeagirfr
      601 vgdiiqiisk ddhnwwqgkl enskngtagl ipspelqewr vaciamektk qeqqasctwf
      661 gkkkkqykdk ylakhnadlv tyeevvklpa fkrktlvllg ahgvgrrhik ntlitkhpdr
      721 faypiphttr ppkkdeengk nyyfvshdqm mqdisnneyl eygshedamy gtkletirki
      781 heqgliaild vepqalkvlr taefapfvvf iaaptitpgi nedeslqrlq keseilqrty
      841 ahyfdltiin neidetirhl eeaielvcta sqwvpvswvy
//
LOCUS       XP_053928592             378 aa            linear   VRT 09-MAR-2023
DEFINITION  probable G-protein coupled receptor 34 [Cuculus canorus].
ACCESSION   XP_053928592
VERSION     XP_053928592.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072617.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..378
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..378
                     /product="probable G-protein coupled receptor 34"
                     /calculated_mol_wt=43099
     Region          47..331
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          49..73
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          82..103
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          120..142
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          165..181
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          209..232
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          258..280
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          299..324
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..378
                     /gene="GPR34"
                     /coded_by="XM_054072617.1:153..1289"
                     /db_xref="GeneID:104057320"
ORIGIN      
        1 mmataaadll ttlphkevfw snqtklaina seiknncpld dddslsltli vfysiifvig
       61 lvgniialfa flcihqkrns iqiyllnvav adlllifclp frilyhikkn twtfglilck
      121 ivgtlfymnm yisivllgli sldryvkink svkrpkmltt trsihiccvv walaltgfli
      181 vvvpslsksk dsnstmcfhy rnkqnakiea ilnyiiviif wivffllils yvkiaknllk
      241 iakkranfpn agkytqtarn sfivlvifti cfvpyhvfrf vyitsqlqtt scywkeiiht
      301 cnevmlifss fnscldpvmy flmsrsvrkt vfqlicrklh gdsglalest seiklgqytq
      361 erstttpyss slkkksli
//
LOCUS       XP_053928601             366 aa            linear   VRT 09-MAR-2023
DEFINITION  probable G-protein coupled receptor 82 [Cuculus canorus].
ACCESSION   XP_053928601
VERSION     XP_053928601.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072626.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..366
                     /product="probable G-protein coupled receptor 82"
                     /calculated_mol_wt=41730
     Region          16..318
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          18..42
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          51..72
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          93..115
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          153..169
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          198..221
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          246..268
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          286..311
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..366
                     /gene="GPR82"
                     /coded_by="XM_054072626.1:346..1446"
                     /db_xref="GeneID:128852850"
ORIGIN      
        1 mrnstcllqp ssattvalpv iysflfplgs fgnvltawaf srqaptkrtq yiylvnlvta
       61 nllicstmpf lvayfargyq wtynsavcki anhfgtvimh vsmyvtivil cstalnqyat
      121 lkknsdaqys pafnknfyrc vlekfrqpkf akylcliiwl tvlcitvtai tynvqarake
      181 efhgcynirv evgefttmia aclatacffi sfmtvllsyy sltrhlskiq kttcigekhl
      241 iyhtvkrnil viqmiltvcf lpyhifrpif yvlitnndcs rlnylveikn fltclaalks
      301 sldpvitlli dktfrkslyg lftkstqkhh khkaavfted sqsvkeygkn tsnnklistt
      361 ynktfi
//
LOCUS       XP_053928610             366 aa            linear   VRT 09-MAR-2023
DEFINITION  probable G-protein coupled receptor 82 [Cuculus canorus].
ACCESSION   XP_053928610
VERSION     XP_053928610.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072635.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..366
                     /product="probable G-protein coupled receptor 82"
                     /calculated_mol_wt=41730
     Region          16..318
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          18..42
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          51..72
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          93..115
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          153..169
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          198..221
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          246..268
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          286..311
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..366
                     /gene="GPR82"
                     /coded_by="XM_054072635.1:263..1363"
                     /db_xref="GeneID:128852850"
ORIGIN      
        1 mrnstcllqp ssattvalpv iysflfplgs fgnvltawaf srqaptkrtq yiylvnlvta
       61 nllicstmpf lvayfargyq wtynsavcki anhfgtvimh vsmyvtivil cstalnqyat
      121 lkknsdaqys pafnknfyrc vlekfrqpkf akylcliiwl tvlcitvtai tynvqarake
      181 efhgcynirv evgefttmia aclatacffi sfmtvllsyy sltrhlskiq kttcigekhl
      241 iyhtvkrnil viqmiltvcf lpyhifrpif yvlitnndcs rlnylveikn fltclaalks
      301 sldpvitlli dktfrkslyg lftkstqkhh khkaavfted sqsvkeygkn tsnnklistt
      361 ynktfi
//
LOCUS       XP_053928624             516 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: nyctalopin [Cuculus canorus].
ACCESSION   XP_053928624
VERSION     XP_053928624.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072649.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..516
                     /product="LOW QUALITY PROTEIN: nyctalopin"
                     /calculated_mol_wt=58460
     Region          82..>371
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          105..124
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          125..148
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          149..173
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          174..197
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          198..220
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          221..244
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          245..268
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          269..292
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          293..316
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          317..338
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          341..364
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          373..>407
                     /region_name="LRRCT"
                     /note="Leucine rich repeat C-terminal domain; smart00082"
                     /db_xref="CDD:214507"
     CDS             1..516
                     /gene="NYX"
                     /coded_by="XM_054072649.1:2256..3806"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /db_xref="GeneID:104057488"
ORIGIN      
        1 miacekkkhf fqrptrmang slmssrkdta itwldpsssl aipemplvsn qvilwvphvh
       61 avwacvrscp ancvctqers csvlcdragl gqipsqfpce assinldkns ikflserafg
      121 tlpslkslsl nhnnisfitp gafkglpslt elkmahneyi rylhtrtfta lkrlvrldla
      181 dcnlfnipdr ifielpalqe lfcfqnnfrr ipgairgmen lthvylernr ieavaynslq
      241 gltrlkylnl qdnrinvvhe rafqgcqkme ylylndnlis elpensfdgl rclkmlnlgg
      301 nslrnvsntw frdlrelevl yldrnrisyi eegafenlts lvalhlnsnn lttlpfsvfq
      361 pvyflgrlyl frnpwecdcr iewlkewmqn yrlvrdipca spssvagidl mdvlyerspe
      421 gycldpeeln vtsegptpsg epwstteskf nslisklllh mglpeevant teifgnvtql
      481 dglidgvssg vgednieaas sfylsalftv lvlqik
//
LOCUS       XP_053928633             515 aa            linear   VRT 09-MAR-2023
DEFINITION  fatty acyl-CoA reductase 2 [Cuculus canorus].
ACCESSION   XP_053928633
VERSION     XP_053928633.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072658.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..515
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..515
                     /product="fatty acyl-CoA reductase 2"
                     /calculated_mol_wt=59049
     Region          11..330
                     /region_name="FAR-N_SDR_e"
                     /note="fatty acyl CoA reductases (FARs), extended (e)
                     SDRs; cd05236"
                     /db_xref="CDD:187547"
     Site            order(17,19..22,44..46,111..113,130,151..153,204,208,
                     229..232)
                     /site_type="other"
                     /note="putative NAD(P) binding site [chemical binding]"
                     /db_xref="CDD:187547"
     Site            order(131,153,204,208)
                     /site_type="active"
                     /db_xref="CDD:187547"
     Site            order(153,204,231,243,259,265)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:187547"
     Region          357..447
                     /region_name="Sterile"
                     /note="Male sterility protein; pfam03015"
                     /db_xref="CDD:460779"
     CDS             1..515
                     /gene="FAR2"
                     /coded_by="XM_054072658.1:185..1732"
                     /db_xref="GeneID:104066631"
ORIGIN      
        1 mssvsayyng ktvlitgatg fmgkvlvekl lrsspevkav yilvrpkagq smqervanml
       61 kckvfdrvre dcpnfhekik pinaeltqpk laisaedeve lltrvnivfh caatvrfdep
      121 lkhavqlnav gtqrllelar qmqnleafih istayancvr kcideviypp paepkklfdl
      181 vewldesiiq ditpkllgaw pntytytkal seyliqqekg nlniaiirps ivgaswhepf
      241 pgwidsfngt sgilvaagkg ilrtvianne avadmvpvdv ainltlvagw ytavhrpknm
      301 lvyncttggi npffwgemeq yamstfkrnp leqafrtpka hmtsnylinq ywitvnhkap
      361 allydlymrl tgrkprmmki inrlhksmml lqyfstqswd wssdnmnmll sqlntedkkl
      421 ynfdvrqlhw seyiesyclg akkyllnedm agipaakqhl rklrniryaf nttllviiwr
      481 ifiarsqmar niwyfvvslc ykflsyfras stlrh
//
LOCUS       XP_053928642             515 aa            linear   VRT 09-MAR-2023
DEFINITION  fatty acyl-CoA reductase 2 [Cuculus canorus].
ACCESSION   XP_053928642
VERSION     XP_053928642.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072667.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..515
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..515
                     /product="fatty acyl-CoA reductase 2"
                     /calculated_mol_wt=59049
     Region          11..330
                     /region_name="FAR-N_SDR_e"
                     /note="fatty acyl CoA reductases (FARs), extended (e)
                     SDRs; cd05236"
                     /db_xref="CDD:187547"
     Site            order(17,19..22,44..46,111..113,130,151..153,204,208,
                     229..232)
                     /site_type="other"
                     /note="putative NAD(P) binding site [chemical binding]"
                     /db_xref="CDD:187547"
     Site            order(131,153,204,208)
                     /site_type="active"
                     /db_xref="CDD:187547"
     Site            order(153,204,231,243,259,265)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:187547"
     Region          357..447
                     /region_name="Sterile"
                     /note="Male sterility protein; pfam03015"
                     /db_xref="CDD:460779"
     CDS             1..515
                     /gene="FAR2"
                     /coded_by="XM_054072667.1:183..1730"
                     /db_xref="GeneID:104066631"
ORIGIN      
        1 mssvsayyng ktvlitgatg fmgkvlvekl lrsspevkav yilvrpkagq smqervanml
       61 kckvfdrvre dcpnfhekik pinaeltqpk laisaedeve lltrvnivfh caatvrfdep
      121 lkhavqlnav gtqrllelar qmqnleafih istayancvr kcideviypp paepkklfdl
      181 vewldesiiq ditpkllgaw pntytytkal seyliqqekg nlniaiirps ivgaswhepf
      241 pgwidsfngt sgilvaagkg ilrtvianne avadmvpvdv ainltlvagw ytavhrpknm
      301 lvyncttggi npffwgemeq yamstfkrnp leqafrtpka hmtsnylinq ywitvnhkap
      361 allydlymrl tgrkprmmki inrlhksmml lqyfstqswd wssdnmnmll sqlntedkkl
      421 ynfdvrqlhw seyiesyclg akkyllnedm agipaakqhl rklrniryaf nttllviiwr
      481 ifiarsqmar niwyfvvslc ykflsyfras stlrh
//
LOCUS       XP_053928652             515 aa            linear   VRT 09-MAR-2023
DEFINITION  fatty acyl-CoA reductase 2 [Cuculus canorus].
ACCESSION   XP_053928652
VERSION     XP_053928652.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072677.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..515
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..515
                     /product="fatty acyl-CoA reductase 2"
                     /calculated_mol_wt=59049
     Region          11..330
                     /region_name="FAR-N_SDR_e"
                     /note="fatty acyl CoA reductases (FARs), extended (e)
                     SDRs; cd05236"
                     /db_xref="CDD:187547"
     Site            order(17,19..22,44..46,111..113,130,151..153,204,208,
                     229..232)
                     /site_type="other"
                     /note="putative NAD(P) binding site [chemical binding]"
                     /db_xref="CDD:187547"
     Site            order(131,153,204,208)
                     /site_type="active"
                     /db_xref="CDD:187547"
     Site            order(153,204,231,243,259,265)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:187547"
     Region          357..447
                     /region_name="Sterile"
                     /note="Male sterility protein; pfam03015"
                     /db_xref="CDD:460779"
     CDS             1..515
                     /gene="FAR2"
                     /coded_by="XM_054072677.1:175..1722"
                     /db_xref="GeneID:104066631"
ORIGIN      
        1 mssvsayyng ktvlitgatg fmgkvlvekl lrsspevkav yilvrpkagq smqervanml
       61 kckvfdrvre dcpnfhekik pinaeltqpk laisaedeve lltrvnivfh caatvrfdep
      121 lkhavqlnav gtqrllelar qmqnleafih istayancvr kcideviypp paepkklfdl
      181 vewldesiiq ditpkllgaw pntytytkal seyliqqekg nlniaiirps ivgaswhepf
      241 pgwidsfngt sgilvaagkg ilrtvianne avadmvpvdv ainltlvagw ytavhrpknm
      301 lvyncttggi npffwgemeq yamstfkrnp leqafrtpka hmtsnylinq ywitvnhkap
      361 allydlymrl tgrkprmmki inrlhksmml lqyfstqswd wssdnmnmll sqlntedkkl
      421 ynfdvrqlhw seyiesyclg akkyllnedm agipaakqhl rklrniryaf nttllviiwr
      481 ifiarsqmar niwyfvvslc ykflsyfras stlrh
//
LOCUS       XP_053928662             515 aa            linear   VRT 09-MAR-2023
DEFINITION  fatty acyl-CoA reductase 2 [Cuculus canorus].
ACCESSION   XP_053928662
VERSION     XP_053928662.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072687.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..515
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..515
                     /product="fatty acyl-CoA reductase 2"
                     /calculated_mol_wt=59049
     Region          11..330
                     /region_name="FAR-N_SDR_e"
                     /note="fatty acyl CoA reductases (FARs), extended (e)
                     SDRs; cd05236"
                     /db_xref="CDD:187547"
     Site            order(17,19..22,44..46,111..113,130,151..153,204,208,
                     229..232)
                     /site_type="other"
                     /note="putative NAD(P) binding site [chemical binding]"
                     /db_xref="CDD:187547"
     Site            order(131,153,204,208)
                     /site_type="active"
                     /db_xref="CDD:187547"
     Site            order(153,204,231,243,259,265)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:187547"
     Region          357..447
                     /region_name="Sterile"
                     /note="Male sterility protein; pfam03015"
                     /db_xref="CDD:460779"
     CDS             1..515
                     /gene="FAR2"
                     /coded_by="XM_054072687.1:239..1786"
                     /db_xref="GeneID:104066631"
ORIGIN      
        1 mssvsayyng ktvlitgatg fmgkvlvekl lrsspevkav yilvrpkagq smqervanml
       61 kckvfdrvre dcpnfhekik pinaeltqpk laisaedeve lltrvnivfh caatvrfdep
      121 lkhavqlnav gtqrllelar qmqnleafih istayancvr kcideviypp paepkklfdl
      181 vewldesiiq ditpkllgaw pntytytkal seyliqqekg nlniaiirps ivgaswhepf
      241 pgwidsfngt sgilvaagkg ilrtvianne avadmvpvdv ainltlvagw ytavhrpknm
      301 lvyncttggi npffwgemeq yamstfkrnp leqafrtpka hmtsnylinq ywitvnhkap
      361 allydlymrl tgrkprmmki inrlhksmml lqyfstqswd wssdnmnmll sqlntedkkl
      421 ynfdvrqlhw seyiesyclg akkyllnedm agipaakqhl rklrniryaf nttllviiwr
      481 ifiarsqmar niwyfvvslc ykflsyfras stlrh
//
LOCUS       XP_053928672             515 aa            linear   VRT 09-MAR-2023
DEFINITION  fatty acyl-CoA reductase 2 [Cuculus canorus].
ACCESSION   XP_053928672
VERSION     XP_053928672.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072697.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..515
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..515
                     /product="fatty acyl-CoA reductase 2"
                     /calculated_mol_wt=59049
     Region          11..330
                     /region_name="FAR-N_SDR_e"
                     /note="fatty acyl CoA reductases (FARs), extended (e)
                     SDRs; cd05236"
                     /db_xref="CDD:187547"
     Site            order(17,19..22,44..46,111..113,130,151..153,204,208,
                     229..232)
                     /site_type="other"
                     /note="putative NAD(P) binding site [chemical binding]"
                     /db_xref="CDD:187547"
     Site            order(131,153,204,208)
                     /site_type="active"
                     /db_xref="CDD:187547"
     Site            order(153,204,231,243,259,265)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:187547"
     Region          357..447
                     /region_name="Sterile"
                     /note="Male sterility protein; pfam03015"
                     /db_xref="CDD:460779"
     CDS             1..515
                     /gene="FAR2"
                     /coded_by="XM_054072697.1:282..1829"
                     /db_xref="GeneID:104066631"
ORIGIN      
        1 mssvsayyng ktvlitgatg fmgkvlvekl lrsspevkav yilvrpkagq smqervanml
       61 kckvfdrvre dcpnfhekik pinaeltqpk laisaedeve lltrvnivfh caatvrfdep
      121 lkhavqlnav gtqrllelar qmqnleafih istayancvr kcideviypp paepkklfdl
      181 vewldesiiq ditpkllgaw pntytytkal seyliqqekg nlniaiirps ivgaswhepf
      241 pgwidsfngt sgilvaagkg ilrtvianne avadmvpvdv ainltlvagw ytavhrpknm
      301 lvyncttggi npffwgemeq yamstfkrnp leqafrtpka hmtsnylinq ywitvnhkap
      361 allydlymrl tgrkprmmki inrlhksmml lqyfstqswd wssdnmnmll sqlntedkkl
      421 ynfdvrqlhw seyiesyclg akkyllnedm agipaakqhl rklrniryaf nttllviiwr
      481 ifiarsqmar niwyfvvslc ykflsyfras stlrh
//
LOCUS       XP_053928682             515 aa            linear   VRT 09-MAR-2023
DEFINITION  fatty acyl-CoA reductase 2 [Cuculus canorus].
ACCESSION   XP_053928682
VERSION     XP_053928682.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072707.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..515
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..515
                     /product="fatty acyl-CoA reductase 2"
                     /calculated_mol_wt=59049
     Region          11..330
                     /region_name="FAR-N_SDR_e"
                     /note="fatty acyl CoA reductases (FARs), extended (e)
                     SDRs; cd05236"
                     /db_xref="CDD:187547"
     Site            order(17,19..22,44..46,111..113,130,151..153,204,208,
                     229..232)
                     /site_type="other"
                     /note="putative NAD(P) binding site [chemical binding]"
                     /db_xref="CDD:187547"
     Site            order(131,153,204,208)
                     /site_type="active"
                     /db_xref="CDD:187547"
     Site            order(153,204,231,243,259,265)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:187547"
     Region          357..447
                     /region_name="Sterile"
                     /note="Male sterility protein; pfam03015"
                     /db_xref="CDD:460779"
     CDS             1..515
                     /gene="FAR2"
                     /coded_by="XM_054072707.1:152..1699"
                     /db_xref="GeneID:104066631"
ORIGIN      
        1 mssvsayyng ktvlitgatg fmgkvlvekl lrsspevkav yilvrpkagq smqervanml
       61 kckvfdrvre dcpnfhekik pinaeltqpk laisaedeve lltrvnivfh caatvrfdep
      121 lkhavqlnav gtqrllelar qmqnleafih istayancvr kcideviypp paepkklfdl
      181 vewldesiiq ditpkllgaw pntytytkal seyliqqekg nlniaiirps ivgaswhepf
      241 pgwidsfngt sgilvaagkg ilrtvianne avadmvpvdv ainltlvagw ytavhrpknm
      301 lvyncttggi npffwgemeq yamstfkrnp leqafrtpka hmtsnylinq ywitvnhkap
      361 allydlymrl tgrkprmmki inrlhksmml lqyfstqswd wssdnmnmll sqlntedkkl
      421 ynfdvrqlhw seyiesyclg akkyllnedm agipaakqhl rklrniryaf nttllviiwr
      481 ifiarsqmar niwyfvvslc ykflsyfras stlrh
//
LOCUS       XP_053928692             515 aa            linear   VRT 09-MAR-2023
DEFINITION  fatty acyl-CoA reductase 2 [Cuculus canorus].
ACCESSION   XP_053928692
VERSION     XP_053928692.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072717.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..515
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..515
                     /product="fatty acyl-CoA reductase 2"
                     /calculated_mol_wt=59049
     Region          11..330
                     /region_name="FAR-N_SDR_e"
                     /note="fatty acyl CoA reductases (FARs), extended (e)
                     SDRs; cd05236"
                     /db_xref="CDD:187547"
     Site            order(17,19..22,44..46,111..113,130,151..153,204,208,
                     229..232)
                     /site_type="other"
                     /note="putative NAD(P) binding site [chemical binding]"
                     /db_xref="CDD:187547"
     Site            order(131,153,204,208)
                     /site_type="active"
                     /db_xref="CDD:187547"
     Site            order(153,204,231,243,259,265)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:187547"
     Region          357..447
                     /region_name="Sterile"
                     /note="Male sterility protein; pfam03015"
                     /db_xref="CDD:460779"
     CDS             1..515
                     /gene="FAR2"
                     /coded_by="XM_054072717.1:174..1721"
                     /db_xref="GeneID:104066631"
ORIGIN      
        1 mssvsayyng ktvlitgatg fmgkvlvekl lrsspevkav yilvrpkagq smqervanml
       61 kckvfdrvre dcpnfhekik pinaeltqpk laisaedeve lltrvnivfh caatvrfdep
      121 lkhavqlnav gtqrllelar qmqnleafih istayancvr kcideviypp paepkklfdl
      181 vewldesiiq ditpkllgaw pntytytkal seyliqqekg nlniaiirps ivgaswhepf
      241 pgwidsfngt sgilvaagkg ilrtvianne avadmvpvdv ainltlvagw ytavhrpknm
      301 lvyncttggi npffwgemeq yamstfkrnp leqafrtpka hmtsnylinq ywitvnhkap
      361 allydlymrl tgrkprmmki inrlhksmml lqyfstqswd wssdnmnmll sqlntedkkl
      421 ynfdvrqlhw seyiesyclg akkyllnedm agipaakqhl rklrniryaf nttllviiwr
      481 ifiarsqmar niwyfvvslc ykflsyfras stlrh
//
LOCUS       XP_053928706            2360 aa            linear   VRT 09-MAR-2023
DEFINITION  neuron navigator 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053928706
VERSION     XP_053928706.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072731.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2360
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2360
                     /product="neuron navigator 3 isoform X1"
                     /calculated_mol_wt=252854
     Region          79..183
                     /region_name="CH_NAV3"
                     /note="calponin homology (CH) domain found in neuron
                     navigator 3; cd21286"
                     /db_xref="CDD:409135"
     Site            order(79,83,137,139..140,143..144,146,155..163,168,
                     170..171,173..174,177..178,181)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409135"
     Region          <208..588
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1573..>1653
                     /region_name="COG4372"
                     /note="Uncharacterized protein, contains DUF3084 domain
                     [Function unknown]"
                     /db_xref="CDD:443500"
     Region          <2010..2247
                     /region_name="McrB"
                     /note="5-methylcytosine-specific restriction endonuclease
                     McrBC, GTP-binding regulatory subunit McrB [Defense
                     mechanisms]; COG1401"
                     /db_xref="CDD:441011"
     CDS             1..2360
                     /gene="NAV3"
                     /coded_by="XM_054072731.1:208..7290"
                     /db_xref="GeneID:104061154"
ORIGIN      
        1 mpvlgvaskl rqpavgskpv htalpipnlg psgsqqyspk sleltgaess mlscqltlks
       61 tcdfgerral qgktqeieds kiytdwanhy laksghkrli kdlqqdiadg vllaeiiqii
      121 anekveding cprsqsqmie nvdvclsfla argvnvqgls aeeirngnlk ailglffsls
      181 rykqqqhhqq qyyqslvelq qqvpsppaet sqskthqdmq ssltaryatq snhsgiatsq
      241 kkasrlpgps rvpaagsstk vqgasnlnrr sqsfnsidkn kppqyangne kadspkgphp
      301 cagmngnvqh ptstgqqqvs aipspsaskp wrsksmnvkh satstmlsvk qpspatsptp
      361 ssdrlkppps evvkppssgq ksmlekfklv nartalrppl slssgpsdsg reddtfsecg
      421 eidvlsggvn sggstssspk vspkltppka gsknlsnkks llqpkdkeek nrdknkvcte
      481 ktvkeekdqv tetstkkssk iaslipkgsk ttaakkesli psssgipkpg skvptakqst
      541 pptctgskev ekvrttkgpq sqpttksqln ekaspssgla ssegkepsga flgsstalsa
      601 smaasssqst gngvvqlpqq qqyshpntat vapfiyrtls endstslppa dsctsptkmd
      661 lsfsktakqc leeisgedpe trrmrtvkni adlrqnleet msslrgtqis hstlettfds
      721 tvttevngrs ipsltsrstp vtwrlgqasp rlqagdapsl gagyprssas rfihtdpsrf
      781 myttplrraa vsrlgnisqi dmsekgsgdl dmssevdvgg ymsdgdilgk slrtddinsg
      841 ymtdgglnly trslnripdl aasrdviqrg vhdvtvdads wddsssvssg lsdtldnlst
      901 ddlnttssvs sysnitassr knthaqlktd sekrsvtdse twgsieelkk peedfdnsid
      961 ssgkwkglpl glseesekag qkaslsvsqt gswrrgmtaq vgttqsrhka gtsalktpgk
     1021 tddakasekv ktplkgasiq rspsdagkss gdegkkppsg igrttatgsf gfkksgmgss
     1081 tiittsgati tsgsatlgkm pkssaiggks nagrktsldg sqnqddgilh vnskttlqyr
     1141 slprpskssg sgipgrgghr sstssidsnv ssksagaaat klrepskigs grsspvtinq
     1201 tdkekekvav sdsesvslss spkssptsas asgtpglrqp gskypdiasp tfrrlfgaka
     1261 sgkaasapst egvkptsamp spsttlarqg slespssgtg smgsaggqsg sssplfskps
     1321 dlnadvvsls hslasspasv hsftsgglvw aanlssssag skdtpsyqsm tslhtssesi
     1381 dlplshhgsl sglttstqev qsllmrtgsv rstlsesvql drntlpkkgl rytpssrqts
     1441 qeegkewlrs hstgglqdtg sqsplvspsa msssatgkyh fsnlvsptnl sqfnlpgpsm
     1501 mrsnsipaqd tsfdlyddsq lcgsatslee rpraishsgs frdsmeevhg sslslvssts
     1561 slystaeeka hseqiqklrr elvasqekva tltsqlsana hlvaafeksl gnmtgrlqsl
     1621 tmtaeqkese lielretiem lkaqnsaaqa aiqgalngpd hthkdlrirr qhssesvssi
     1681 nsatshssig sgndadskkk kkknwlrssf kqafgkkkst kppsshsdie eltdsslpss
     1741 pklphssgec gttsmkpsqs asaicectea eaeiilqlks elrekelklt dirlealssa
     1801 hhldqiream nrmqneieil kaendrlkae tgntgkptrp psesssstss sssrqslgls
     1861 lnnlniteav tsdillddvt dgalhkeghs vkilvtinkg ysrakdqkph ayligsigvs
     1921 gktkwdvldg virrlfkeyv frvdpttslg lssdciasyc igevirahsl evpellpcgy
     1981 lvgdnnvitv nlkgveensl dsfvfdtlip kpitqryfnl lmehrriils gpsgtgktyl
     2041 anrlaeyiit ksgrkkteda iatfnvdhks skdlrqylan laeqcsadnn gadlpvviil
     2101 dnlhhissls difngflnck ynkcpyiigt mnqgvssspn lelhhnfrwv lcanhtepvk
     2161 gflgrylrrk lieteiekni rnnelikiid wipktwhhln sflethsssd vtigprlflp
     2221 cpmdvdgsrv wftdlwnysl vpylleavre glqmygkrap wedpskwvad typwssaslq
     2281 hewpsllqlr pedvgyegya sakegttskh vpqtdtegdp lmnmlmrlqe aanyssaqsc
     2341 dsdstshhdd ildsslestl
//
LOCUS       XP_053928714            2359 aa            linear   VRT 09-MAR-2023
DEFINITION  neuron navigator 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053928714
VERSION     XP_053928714.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072739.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2359
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2359
                     /product="neuron navigator 3 isoform X2"
                     /calculated_mol_wt=252783
     Region          79..183
                     /region_name="CH_NAV3"
                     /note="calponin homology (CH) domain found in neuron
                     navigator 3; cd21286"
                     /db_xref="CDD:409135"
     Site            order(79,83,137,139..140,143..144,146,155..163,168,
                     170..171,173..174,177..178,181)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409135"
     Region          <283..587
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1572..>1652
                     /region_name="COG4372"
                     /note="Uncharacterized protein, contains DUF3084 domain
                     [Function unknown]"
                     /db_xref="CDD:443500"
     Region          <2009..2246
                     /region_name="McrB"
                     /note="5-methylcytosine-specific restriction endonuclease
                     McrBC, GTP-binding regulatory subunit McrB [Defense
                     mechanisms]; COG1401"
                     /db_xref="CDD:441011"
     CDS             1..2359
                     /gene="NAV3"
                     /coded_by="XM_054072739.1:207..7286"
                     /db_xref="GeneID:104061154"
ORIGIN      
        1 mpvlgvaskl rqpavgskpv htalpipnlg psgsqqyspk sleltgaess mlscqltlks
       61 tcdfgerral qgktqeieds kiytdwanhy laksghkrli kdlqqdiadg vllaeiiqii
      121 anekveding cprsqsqmie nvdvclsfla argvnvqgls aeeirngnlk ailglffsls
      181 rykqqqhhqq qyyqslvelq qqvpsppaet sqskthqdmq ssltaryatq snhsgiatsq
      241 kkasrlpgps rvpaagsstk vqgasnlnrr sqsfnsidkn kppqyangne kdspkgphpc
      301 agmngnvqhp tstgqqqvsa ipspsaskpw rsksmnvkhs atstmlsvkq pspatsptps
      361 sdrlkpppse vvkppssgqk smlekfklvn artalrppls lssgpsdsgr eddtfsecge
      421 idvlsggvns ggstssspkv spkltppkag sknlsnkksl lqpkdkeekn rdknkvctek
      481 tvkeekdqvt etstkksski aslipkgskt taakkeslip sssgipkpgs kvptakqstp
      541 ptctgskeve kvrttkgpqs qpttksqlne kaspssglas segkepsgaf lgsstalsas
      601 maasssqstg ngvvqlpqqq qyshpntatv apfiyrtlse ndstslppad sctsptkmdl
      661 sfsktakqcl eeisgedpet rrmrtvknia dlrqnleetm sslrgtqish stlettfdst
      721 vttevngrsi psltsrstpv twrlgqaspr lqagdapslg agyprssasr fihtdpsrfm
      781 yttplrraav srlgnisqid msekgsgdld mssevdvggy msdgdilgks lrtddinsgy
      841 mtdgglnlyt rslnripdla asrdviqrgv hdvtvdadsw ddsssvssgl sdtldnlstd
      901 dlnttssvss ysnitassrk nthaqlktds ekrsvtdset wgsieelkkp eedfdnsids
      961 sgkwkglplg lseesekagq kaslsvsqtg swrrgmtaqv gttqsrhkag tsalktpgkt
     1021 ddakasekvk tplkgasiqr spsdagkssg degkkppsgi grttatgsfg fkksgmgsst
     1081 iittsgatit sgsatlgkmp kssaiggksn agrktsldgs qnqddgilhv nskttlqyrs
     1141 lprpskssgs gipgrgghrs stssidsnvs sksagaaatk lrepskigsg rsspvtinqt
     1201 dkekekvavs dsesvslsss pkssptsasa sgtpglrqpg skypdiaspt frrlfgakas
     1261 gkaasapste gvkptsamps psttlarqgs lespssgtgs mgsaggqsgs ssplfskpsd
     1321 lnadvvslsh slasspasvh sftsgglvwa anlssssags kdtpsyqsmt slhtssesid
     1381 lplshhgsls glttstqevq sllmrtgsvr stlsesvqld rntlpkkglr ytpssrqtsq
     1441 eegkewlrsh stgglqdtgs qsplvspsam sssatgkyhf snlvsptnls qfnlpgpsmm
     1501 rsnsipaqdt sfdlyddsql cgsatsleer praishsgsf rdsmeevhgs slslvsstss
     1561 lystaeekah seqiqklrre lvasqekvat ltsqlsanah lvaafekslg nmtgrlqslt
     1621 mtaeqkesel ielretieml kaqnsaaqaa iqgalngpdh thkdlrirrq hssesvssin
     1681 satshssigs gndadskkkk kknwlrssfk qafgkkkstk ppsshsdiee ltdsslpssp
     1741 klphssgecg ttsmkpsqsa saicecteae aeiilqlkse lrekelkltd irlealssah
     1801 hldqireamn rmqneieilk aendrlkaet gntgkptrpp sesssstsss ssrqslglsl
     1861 nnlniteavt sdillddvtd galhkeghsv kilvtinkgy srakdqkpha yligsigvsg
     1921 ktkwdvldgv irrlfkeyvf rvdpttslgl ssdciasyci gevirahsle vpellpcgyl
     1981 vgdnnvitvn lkgveensld sfvfdtlipk pitqryfnll mehrriilsg psgtgktyla
     2041 nrlaeyiitk sgrkktedai atfnvdhkss kdlrqylanl aeqcsadnng adlpvviild
     2101 nlhhisslsd ifngflncky nkcpyiigtm nqgvssspnl elhhnfrwvl canhtepvkg
     2161 flgrylrrkl ieteieknir nnelikiidw ipktwhhlns flethsssdv tigprlflpc
     2221 pmdvdgsrvw ftdlwnyslv pylleavreg lqmygkrapw edpskwvadt ypwssaslqh
     2281 ewpsllqlrp edvgyegyas akegttskhv pqtdtegdpl mnmlmrlqea anyssaqscd
     2341 sdstshhddi ldsslestl
//
LOCUS       XP_053928725            2346 aa            linear   VRT 09-MAR-2023
DEFINITION  neuron navigator 3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053928725
VERSION     XP_053928725.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072750.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2346
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2346
                     /product="neuron navigator 3 isoform X3"
                     /calculated_mol_wt=251303
     Region          79..183
                     /region_name="CH_NAV3"
                     /note="calponin homology (CH) domain found in neuron
                     navigator 3; cd21286"
                     /db_xref="CDD:409135"
     Site            order(79,83,137,139..140,143..144,146,155..163,168,
                     170..171,173..174,177..178,181)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409135"
     Region          <208..588
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1559..>1639
                     /region_name="COG4372"
                     /note="Uncharacterized protein, contains DUF3084 domain
                     [Function unknown]"
                     /db_xref="CDD:443500"
     Region          <1996..2233
                     /region_name="McrB"
                     /note="5-methylcytosine-specific restriction endonuclease
                     McrBC, GTP-binding regulatory subunit McrB [Defense
                     mechanisms]; COG1401"
                     /db_xref="CDD:441011"
     CDS             1..2346
                     /gene="NAV3"
                     /coded_by="XM_054072750.1:207..7247"
                     /db_xref="GeneID:104061154"
ORIGIN      
        1 mpvlgvaskl rqpavgskpv htalpipnlg psgsqqyspk sleltgaess mlscqltlks
       61 tcdfgerral qgktqeieds kiytdwanhy laksghkrli kdlqqdiadg vllaeiiqii
      121 anekveding cprsqsqmie nvdvclsfla argvnvqgls aeeirngnlk ailglffsls
      181 rykqqqhhqq qyyqslvelq qqvpsppaet sqskthqdmq ssltaryatq snhsgiatsq
      241 kkasrlpgps rvpaagsstk vqgasnlnrr sqsfnsidkn kppqyangne kadspkgphp
      301 cagmngnvqh ptstgqqqvs aipspsaskp wrsksmnvkh satstmlsvk qpspatsptp
      361 ssdrlkppps evvkppssgq ksmlekfklv nartalrppl slssgpsdsg reddtfsecg
      421 eidvlsggvn sggstssspk vspkltppka gsknlsnkks llqpkdkeek nrdknkvcte
      481 ktvkeekdqv tetstkkssk iaslipkgsk ttaakkesli psssgipkpg skvptakqst
      541 pptctgskev ekvrttkgpq sqpttksqln ekaspssgla ssegkepsga flgsstalsa
      601 smaasssqst gngvvqlpqq qqyshpntat vapfiyrtls endstslppa dsctsptkmd
      661 lsfsktakqc leeisgedpe trrmrtvkni adlrqnleet msslrgtqis hstlettfds
      721 tvttevngrs ipsltsrstp vtwrlgqasp rlqagdapsl gagyprssas rfihtdpsrf
      781 myttplrraa vsrlgnisqi dmsekgsgdl dmssevdvgg ymsdgdilgk slrtddinsg
      841 ymtdgglnly trslnripdl aasrdviqrg vhdvtvdads wddsssvssg lsdtldnlst
      901 ddlnttssvs sysnitassr knthaqlktd sekrsvtdse twgsieelkk peedfdnsid
      961 ssgkwkglpl glseesekag qkaslsvsqt gswrrgmtaq vgttqsrhka gtsalktpgk
     1021 tddakasekv ktplkgasiq rspsdagkss gdegkkppsg igrttatgsf gfkksgmgss
     1081 tiittsgati tsgsatlgkm pkssaiggks nagrktsldg sqnqddgilh vnskttlqyr
     1141 slprpskssg sgipgrgghr sstssidsnv ssksagaaat klrepskigs grsspvtinq
     1201 tdkekekvav sdsesvslss spkssptsas asgtpglrqp gskypdiasp tfrrlfgaka
     1261 sgkaasapst egvkptsamp spsttlarqg slespssgtg smgsaggqsg sssplfskps
     1321 dlnadvvsls hslasspasv hsftsgglvw aanlssssag skdtpsyqsm tslhtssesi
     1381 dlplshhgsl sglttstqev qsllmrtgsv rstlserytp ssrqtsqeeg kewlrshstg
     1441 glqdtgsqsp lvspsamsss atgkyhfsnl vsptnlsqfn lpgpsmmrsn sipaqdtsfd
     1501 lyddsqlcgs atsleerpra ishsgsfrds meevhgssls lvsstsslys taeekahseq
     1561 iqklrrelva sqekvatlts qlsanahlva afekslgnmt grlqsltmta eqkeseliel
     1621 retiemlkaq nsaaqaaiqg alngpdhthk dlrirrqhss esvssinsat shssigsgnd
     1681 adskkkkkkn wlrssfkqaf gkkkstkpps shsdieeltd sslpsspklp hssgecgtts
     1741 mkpsqsasai cecteaeaei ilqlkselre kelkltdirl ealssahhld qireamnrmq
     1801 neieilkaen drlkaetgnt gkptrppses ssstsssssr qslglslnnl niteavtsdi
     1861 llddvtdgal hkeghsvkil vtinkgysra kdqkphayli gsigvsgktk wdvldgvirr
     1921 lfkeyvfrvd pttslglssd ciasycigev irahslevpe llpcgylvgd nnvitvnlkg
     1981 veensldsfv fdtlipkpit qryfnllmeh rriilsgpsg tgktylanrl aeyiitksgr
     2041 kktedaiatf nvdhksskdl rqylanlaeq csadnngadl pvviildnlh hisslsdifn
     2101 gflnckynkc pyiigtmnqg vssspnlelh hnfrwvlcan htepvkgflg rylrrkliet
     2161 eieknirnne likiidwipk twhhlnsfle thsssdvtig prlflpcpmd vdgsrvwftd
     2221 lwnyslvpyl leavreglqm ygkrapwedp skwvadtypw ssaslqhewp sllqlrpedv
     2281 gyegyasake gttskhvpqt dtegdplmnm lmrlqeaany ssaqscdsds tshhddilds
     2341 slestl
//
LOCUS       XP_053928732            2337 aa            linear   VRT 09-MAR-2023
DEFINITION  neuron navigator 3 isoform X4 [Cuculus canorus].
ACCESSION   XP_053928732
VERSION     XP_053928732.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072757.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2337
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2337
                     /product="neuron navigator 3 isoform X4"
                     /calculated_mol_wt=250464
     Region          79..183
                     /region_name="CH_NAV3"
                     /note="calponin homology (CH) domain found in neuron
                     navigator 3; cd21286"
                     /db_xref="CDD:409135"
     Site            order(79,83,137,139..140,143..144,146,155..163,168,
                     170..171,173..174,177..178,181)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409135"
     Region          <265..565
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1550..>1630
                     /region_name="COG4372"
                     /note="Uncharacterized protein, contains DUF3084 domain
                     [Function unknown]"
                     /db_xref="CDD:443500"
     Region          <1987..2224
                     /region_name="McrB"
                     /note="5-methylcytosine-specific restriction endonuclease
                     McrBC, GTP-binding regulatory subunit McrB [Defense
                     mechanisms]; COG1401"
                     /db_xref="CDD:441011"
     CDS             1..2337
                     /gene="NAV3"
                     /coded_by="XM_054072757.1:208..7221"
                     /db_xref="GeneID:104061154"
ORIGIN      
        1 mpvlgvaskl rqpavgskpv htalpipnlg psgsqqyspk sleltgaess mlscqltlks
       61 tcdfgerral qgktqeieds kiytdwanhy laksghkrli kdlqqdiadg vllaeiiqii
      121 anekveding cprsqsqmie nvdvclsfla argvnvqgls aeeirngnlk ailglffsls
      181 rykqqqhhqq qyyqslvelq qqvpsppaet sqskthqdmq srlpgpsrvp aagsstkvqg
      241 asnlnrrsqs fnsidknkpp qyangnekad spkgphpcag mngnvqhpts tgqqqvsaip
      301 spsaskpwrs ksmnvkhsat stmlsvkqps patsptpssd rlkpppsevv kppssgqksm
      361 lekfklvnar talrpplsls sgpsdsgred dtfsecgeid vlsggvnsgg stssspkvsp
      421 kltppkagsk nlsnkksllq pkdkeeknrd knkvctektv keekdqvtet stkksskias
      481 lipkgsktta akkeslipss sgipkpgskv ptakqstppt ctgskevekv rttkgpqsqp
      541 ttksqlneka spssglasse gkepsgaflg sstalsasma asssqstgng vvqlpqqqqy
      601 shpntatvap fiyrtlsend stslppadsc tsptkmdlsf sktakqclee isgedpetrr
      661 mrtvkniadl rqnleetmss lrgtqishst lettfdstvt tevngrsips ltsrstpvtw
      721 rlgqasprlq agdapslgag yprssasrfi htdpsrfmyt tplrraavsr lgnisqidms
      781 ekgsgdldms sevdvggyms dgdilgkslr tddinsgymt dgglnlytrs lnripdlaas
      841 rdviqrgvhd vtvdadswdd sssvssglsd tldnlstddl nttssvssys nitassrknt
      901 haqlktdsek rsvtdsetwg sieelkkpee dfdnsidssg kwkglplgls eesekagqka
      961 slsvsqtgsw rrgmtaqvgt tqsrhkagts alktpgktdd akasekvktp lkgasiqrsp
     1021 sdagkssgde gkkppsgigr ttatgsfgfk ksgmgsstii ttsgatitsg satlgkmpks
     1081 saiggksnag rktsldgsqn qddgilhvns kttlqyrslp rpskssgsgi pgrgghrsst
     1141 ssidsnvssk sagaaatklr epskigsgrs spvtinqtdk ekekvavsds esvslssspk
     1201 ssptsasasg tpglrqpgsk ypdiasptfr rlfgakasgk aasapstegv kptsampsps
     1261 ttlarqgsle spssgtgsmg saggqsgsss plfskpsdln advvslshsl asspasvhsf
     1321 tsgglvwaan lssssagskd tpsyqsmtsl htssesidlp lshhgslsgl ttstqevqsl
     1381 lmrtgsvrst lsesvqldrn tlpkkglryt pssrqtsqee gkewlrshst gglqdtgsqs
     1441 plvspsamss satgkyhfsn lvsptnlsqf nlpgpsmmrs nsipaqdtsf dlyddsqlcg
     1501 satsleerpr aishsgsfrd smeevhgssl slvsstssly staeekahse qiqklrrelv
     1561 asqekvatlt sqlsanahlv aafekslgnm tgrlqsltmt aeqkeselie lretiemlka
     1621 qnsaaqaaiq galngpdhth kdlrirrqhs sesvssinsa tshssigsgn dadskkkkkk
     1681 nwlrssfkqa fgkkkstkpp sshsdieelt dsslpsspkl phssgecgtt smkpsqsasa
     1741 icecteaeae iilqlkselr ekelkltdir lealssahhl dqireamnrm qneieilkae
     1801 ndrlkaetgn tgkptrppse sssstsssss rqslglslnn lniteavtsd illddvtdga
     1861 lhkeghsvki lvtinkgysr akdqkphayl igsigvsgkt kwdvldgvir rlfkeyvfrv
     1921 dpttslglss dciasycige virahslevp ellpcgylvg dnnvitvnlk gveensldsf
     1981 vfdtlipkpi tqryfnllme hrriilsgps gtgktylanr laeyiitksg rkktedaiat
     2041 fnvdhksskd lrqylanlae qcsadnngad lpvviildnl hhisslsdif ngflnckynk
     2101 cpyiigtmnq gvssspnlel hhnfrwvlca nhtepvkgfl grylrrklie teieknirnn
     2161 elikiidwip ktwhhlnsfl ethsssdvti gprlflpcpm dvdgsrvwft dlwnyslvpy
     2221 lleavreglq mygkrapwed pskwvadtyp wssaslqhew psllqlrped vgyegyasak
     2281 egttskhvpq tdtegdplmn mlmrlqeaan yssaqscdsd stshhddild sslestl
//
LOCUS       XP_053928741            2306 aa            linear   VRT 09-MAR-2023
DEFINITION  neuron navigator 3 isoform X5 [Cuculus canorus].
ACCESSION   XP_053928741
VERSION     XP_053928741.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072766.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2306
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2306
                     /product="neuron navigator 3 isoform X5"
                     /calculated_mol_wt=247411
     Region          27..129
                     /region_name="CH_NAV3"
                     /note="calponin homology (CH) domain found in neuron
                     navigator 3; cd21286"
                     /db_xref="CDD:409135"
     Site            order(29,83,85..86,89..90,92,101..109,114,116..117,
                     119..120,123..124,127)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409135"
     Region          <154..534
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1519..>1599
                     /region_name="COG4372"
                     /note="Uncharacterized protein, contains DUF3084 domain
                     [Function unknown]"
                     /db_xref="CDD:443500"
     Region          <1956..2193
                     /region_name="McrB"
                     /note="5-methylcytosine-specific restriction endonuclease
                     McrBC, GTP-binding regulatory subunit McrB [Defense
                     mechanisms]; COG1401"
                     /db_xref="CDD:441011"
     CDS             1..2306
                     /gene="NAV3"
                     /coded_by="XM_054072766.1:460..7380"
                     /db_xref="GeneID:104061154"
ORIGIN      
        1 mnvmdlssem skhgrnpish kledqkkiyt dwanhylaks ghkrlikdlq qdiadgvlla
       61 eiiqiianek vedingcprs qsqmienvdv clsflaargv nvqglsaeei rngnlkailg
      121 lffslsrykq qqhhqqqyyq slvelqqqvp sppaetsqsk thqdmqsslt aryatqsnhs
      181 giatsqkkas rlpgpsrvpa agsstkvqga snlnrrsqsf nsidknkppq yangnekads
      241 pkgphpcagm ngnvqhptst gqqqvsaips psaskpwrsk smnvkhsats tmlsvkqpsp
      301 atsptpssdr lkpppsevvk ppssgqksml ekfklvnart alrpplslss gpsdsgredd
      361 tfsecgeidv lsggvnsggs tssspkvspk ltppkagskn lsnkksllqp kdkeeknrdk
      421 nkvctektvk eekdqvtets tkksskiasl ipkgskttaa kkeslipsss gipkpgskvp
      481 takqstpptc tgskevekvr ttkgpqsqpt tksqlnekas pssglasseg kepsgaflgs
      541 stalsasmaa sssqstgngv vqlpqqqqys hpntatvapf iyrtlsends tslppadsct
      601 sptkmdlsfs ktakqcleei sgedpetrrm rtvkniadlr qnleetmssl rgtqishstl
      661 ettfdstvtt evngrsipsl tsrstpvtwr lgqasprlqa gdapslgagy prssasrfih
      721 tdpsrfmytt plrraavsrl gnisqidmse kgsgdldmss evdvggymsd gdilgkslrt
      781 ddinsgymtd gglnlytrsl nripdlaasr dviqrgvhdv tvdadswdds ssvssglsdt
      841 ldnlstddln ttssvssysn itassrknth aqlktdsekr svtdsetwgs ieelkkpeed
      901 fdnsidssgk wkglplglse esekagqkas lsvsqtgswr rgmtaqvgtt qsrhkagtsa
      961 lktpgktdda kasekvktpl kgasiqrsps dagkssgdeg kkppsgigrt tatgsfgfkk
     1021 sgmgsstiit tsgatitsgs atlgkmpkss aiggksnagr ktsldgsqnq ddgilhvnsk
     1081 ttlqyrslpr pskssgsgip grgghrssts sidsnvssks agaaatklre pskigsgrss
     1141 pvtinqtdke kekvavsdse svslssspks sptsasasgt pglrqpgsky pdiasptfrr
     1201 lfgakasgka asapstegvk ptsampspst tlarqgsles pssgtgsmgs aggqsgsssp
     1261 lfskpsdlna dvvslshsla sspasvhsft sgglvwaanl ssssagskdt psyqsmtslh
     1321 tssesidlpl shhgslsglt tstqevqsll mrtgsvrstl sesvqldrnt lpkkglrytp
     1381 ssrqtsqeeg kewlrshstg glqdtgsqsp lvspsamsss atgkyhfsnl vsptnlsqfn
     1441 lpgpsmmrsn sipaqdtsfd lyddsqlcgs atsleerpra ishsgsfrds meevhgssls
     1501 lvsstsslys taeekahseq iqklrrelva sqekvatlts qlsanahlva afekslgnmt
     1561 grlqsltmta eqkeseliel retiemlkaq nsaaqaaiqg alngpdhthk dlrirrqhss
     1621 esvssinsat shssigsgnd adskkkkkkn wlrssfkqaf gkkkstkpps shsdieeltd
     1681 sslpsspklp hssgecgtts mkpsqsasai cecteaeaei ilqlkselre kelkltdirl
     1741 ealssahhld qireamnrmq neieilkaen drlkaetgnt gkptrppses ssstsssssr
     1801 qslglslnnl niteavtsdi llddvtdgal hkeghsvkil vtinkgysra kdqkphayli
     1861 gsigvsgktk wdvldgvirr lfkeyvfrvd pttslglssd ciasycigev irahslevpe
     1921 llpcgylvgd nnvitvnlkg veensldsfv fdtlipkpit qryfnllmeh rriilsgpsg
     1981 tgktylanrl aeyiitksgr kktedaiatf nvdhksskdl rqylanlaeq csadnngadl
     2041 pvviildnlh hisslsdifn gflnckynkc pyiigtmnqg vssspnlelh hnfrwvlcan
     2101 htepvkgflg rylrrkliet eieknirnne likiidwipk twhhlnsfle thsssdvtig
     2161 prlflpcpmd vdgsrvwftd lwnyslvpyl leavreglqm ygkrapwedp skwvadtypw
     2221 ssaslqhewp sllqlrpedv gyegyasake gttskhvpqt dtegdplmnm lmrlqeaany
     2281 ssaqscdsds tshhddilds slestl
//
LOCUS       XP_053928751            2306 aa            linear   VRT 09-MAR-2023
DEFINITION  neuron navigator 3 isoform X5 [Cuculus canorus].
ACCESSION   XP_053928751
VERSION     XP_053928751.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072776.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2306
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2306
                     /product="neuron navigator 3 isoform X5"
                     /calculated_mol_wt=247411
     Region          27..129
                     /region_name="CH_NAV3"
                     /note="calponin homology (CH) domain found in neuron
                     navigator 3; cd21286"
                     /db_xref="CDD:409135"
     Site            order(29,83,85..86,89..90,92,101..109,114,116..117,
                     119..120,123..124,127)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409135"
     Region          <154..534
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1519..>1599
                     /region_name="COG4372"
                     /note="Uncharacterized protein, contains DUF3084 domain
                     [Function unknown]"
                     /db_xref="CDD:443500"
     Region          <1956..2193
                     /region_name="McrB"
                     /note="5-methylcytosine-specific restriction endonuclease
                     McrBC, GTP-binding regulatory subunit McrB [Defense
                     mechanisms]; COG1401"
                     /db_xref="CDD:441011"
     CDS             1..2306
                     /gene="NAV3"
                     /coded_by="XM_054072776.1:429..7349"
                     /db_xref="GeneID:104061154"
ORIGIN      
        1 mnvmdlssem skhgrnpish kledqkkiyt dwanhylaks ghkrlikdlq qdiadgvlla
       61 eiiqiianek vedingcprs qsqmienvdv clsflaargv nvqglsaeei rngnlkailg
      121 lffslsrykq qqhhqqqyyq slvelqqqvp sppaetsqsk thqdmqsslt aryatqsnhs
      181 giatsqkkas rlpgpsrvpa agsstkvqga snlnrrsqsf nsidknkppq yangnekads
      241 pkgphpcagm ngnvqhptst gqqqvsaips psaskpwrsk smnvkhsats tmlsvkqpsp
      301 atsptpssdr lkpppsevvk ppssgqksml ekfklvnart alrpplslss gpsdsgredd
      361 tfsecgeidv lsggvnsggs tssspkvspk ltppkagskn lsnkksllqp kdkeeknrdk
      421 nkvctektvk eekdqvtets tkksskiasl ipkgskttaa kkeslipsss gipkpgskvp
      481 takqstpptc tgskevekvr ttkgpqsqpt tksqlnekas pssglasseg kepsgaflgs
      541 stalsasmaa sssqstgngv vqlpqqqqys hpntatvapf iyrtlsends tslppadsct
      601 sptkmdlsfs ktakqcleei sgedpetrrm rtvkniadlr qnleetmssl rgtqishstl
      661 ettfdstvtt evngrsipsl tsrstpvtwr lgqasprlqa gdapslgagy prssasrfih
      721 tdpsrfmytt plrraavsrl gnisqidmse kgsgdldmss evdvggymsd gdilgkslrt
      781 ddinsgymtd gglnlytrsl nripdlaasr dviqrgvhdv tvdadswdds ssvssglsdt
      841 ldnlstddln ttssvssysn itassrknth aqlktdsekr svtdsetwgs ieelkkpeed
      901 fdnsidssgk wkglplglse esekagqkas lsvsqtgswr rgmtaqvgtt qsrhkagtsa
      961 lktpgktdda kasekvktpl kgasiqrsps dagkssgdeg kkppsgigrt tatgsfgfkk
     1021 sgmgsstiit tsgatitsgs atlgkmpkss aiggksnagr ktsldgsqnq ddgilhvnsk
     1081 ttlqyrslpr pskssgsgip grgghrssts sidsnvssks agaaatklre pskigsgrss
     1141 pvtinqtdke kekvavsdse svslssspks sptsasasgt pglrqpgsky pdiasptfrr
     1201 lfgakasgka asapstegvk ptsampspst tlarqgsles pssgtgsmgs aggqsgsssp
     1261 lfskpsdlna dvvslshsla sspasvhsft sgglvwaanl ssssagskdt psyqsmtslh
     1321 tssesidlpl shhgslsglt tstqevqsll mrtgsvrstl sesvqldrnt lpkkglrytp
     1381 ssrqtsqeeg kewlrshstg glqdtgsqsp lvspsamsss atgkyhfsnl vsptnlsqfn
     1441 lpgpsmmrsn sipaqdtsfd lyddsqlcgs atsleerpra ishsgsfrds meevhgssls
     1501 lvsstsslys taeekahseq iqklrrelva sqekvatlts qlsanahlva afekslgnmt
     1561 grlqsltmta eqkeseliel retiemlkaq nsaaqaaiqg alngpdhthk dlrirrqhss
     1621 esvssinsat shssigsgnd adskkkkkkn wlrssfkqaf gkkkstkpps shsdieeltd
     1681 sslpsspklp hssgecgtts mkpsqsasai cecteaeaei ilqlkselre kelkltdirl
     1741 ealssahhld qireamnrmq neieilkaen drlkaetgnt gkptrppses ssstsssssr
     1801 qslglslnnl niteavtsdi llddvtdgal hkeghsvkil vtinkgysra kdqkphayli
     1861 gsigvsgktk wdvldgvirr lfkeyvfrvd pttslglssd ciasycigev irahslevpe
     1921 llpcgylvgd nnvitvnlkg veensldsfv fdtlipkpit qryfnllmeh rriilsgpsg
     1981 tgktylanrl aeyiitksgr kktedaiatf nvdhksskdl rqylanlaeq csadnngadl
     2041 pvviildnlh hisslsdifn gflnckynkc pyiigtmnqg vssspnlelh hnfrwvlcan
     2101 htepvkgflg rylrrkliet eieknirnne likiidwipk twhhlnsfle thsssdvtig
     2161 prlflpcpmd vdgsrvwftd lwnyslvpyl leavreglqm ygkrapwedp skwvadtypw
     2221 ssaslqhewp sllqlrpedv gyegyasake gttskhvpqt dtegdplmnm lmrlqeaany
     2281 ssaqscdsds tshhddilds slestl
//
LOCUS       XP_053928758            2306 aa            linear   VRT 09-MAR-2023
DEFINITION  neuron navigator 3 isoform X5 [Cuculus canorus].
ACCESSION   XP_053928758
VERSION     XP_053928758.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072783.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2306
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2306
                     /product="neuron navigator 3 isoform X5"
                     /calculated_mol_wt=247411
     Region          27..129
                     /region_name="CH_NAV3"
                     /note="calponin homology (CH) domain found in neuron
                     navigator 3; cd21286"
                     /db_xref="CDD:409135"
     Site            order(29,83,85..86,89..90,92,101..109,114,116..117,
                     119..120,123..124,127)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409135"
     Region          <154..534
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1519..>1599
                     /region_name="COG4372"
                     /note="Uncharacterized protein, contains DUF3084 domain
                     [Function unknown]"
                     /db_xref="CDD:443500"
     Region          <1956..2193
                     /region_name="McrB"
                     /note="5-methylcytosine-specific restriction endonuclease
                     McrBC, GTP-binding regulatory subunit McrB [Defense
                     mechanisms]; COG1401"
                     /db_xref="CDD:441011"
     CDS             1..2306
                     /gene="NAV3"
                     /coded_by="XM_054072783.1:429..7349"
                     /db_xref="GeneID:104061154"
ORIGIN      
        1 mnvmdlssem skhgrnpish kledqkkiyt dwanhylaks ghkrlikdlq qdiadgvlla
       61 eiiqiianek vedingcprs qsqmienvdv clsflaargv nvqglsaeei rngnlkailg
      121 lffslsrykq qqhhqqqyyq slvelqqqvp sppaetsqsk thqdmqsslt aryatqsnhs
      181 giatsqkkas rlpgpsrvpa agsstkvqga snlnrrsqsf nsidknkppq yangnekads
      241 pkgphpcagm ngnvqhptst gqqqvsaips psaskpwrsk smnvkhsats tmlsvkqpsp
      301 atsptpssdr lkpppsevvk ppssgqksml ekfklvnart alrpplslss gpsdsgredd
      361 tfsecgeidv lsggvnsggs tssspkvspk ltppkagskn lsnkksllqp kdkeeknrdk
      421 nkvctektvk eekdqvtets tkksskiasl ipkgskttaa kkeslipsss gipkpgskvp
      481 takqstpptc tgskevekvr ttkgpqsqpt tksqlnekas pssglasseg kepsgaflgs
      541 stalsasmaa sssqstgngv vqlpqqqqys hpntatvapf iyrtlsends tslppadsct
      601 sptkmdlsfs ktakqcleei sgedpetrrm rtvkniadlr qnleetmssl rgtqishstl
      661 ettfdstvtt evngrsipsl tsrstpvtwr lgqasprlqa gdapslgagy prssasrfih
      721 tdpsrfmytt plrraavsrl gnisqidmse kgsgdldmss evdvggymsd gdilgkslrt
      781 ddinsgymtd gglnlytrsl nripdlaasr dviqrgvhdv tvdadswdds ssvssglsdt
      841 ldnlstddln ttssvssysn itassrknth aqlktdsekr svtdsetwgs ieelkkpeed
      901 fdnsidssgk wkglplglse esekagqkas lsvsqtgswr rgmtaqvgtt qsrhkagtsa
      961 lktpgktdda kasekvktpl kgasiqrsps dagkssgdeg kkppsgigrt tatgsfgfkk
     1021 sgmgsstiit tsgatitsgs atlgkmpkss aiggksnagr ktsldgsqnq ddgilhvnsk
     1081 ttlqyrslpr pskssgsgip grgghrssts sidsnvssks agaaatklre pskigsgrss
     1141 pvtinqtdke kekvavsdse svslssspks sptsasasgt pglrqpgsky pdiasptfrr
     1201 lfgakasgka asapstegvk ptsampspst tlarqgsles pssgtgsmgs aggqsgsssp
     1261 lfskpsdlna dvvslshsla sspasvhsft sgglvwaanl ssssagskdt psyqsmtslh
     1321 tssesidlpl shhgslsglt tstqevqsll mrtgsvrstl sesvqldrnt lpkkglrytp
     1381 ssrqtsqeeg kewlrshstg glqdtgsqsp lvspsamsss atgkyhfsnl vsptnlsqfn
     1441 lpgpsmmrsn sipaqdtsfd lyddsqlcgs atsleerpra ishsgsfrds meevhgssls
     1501 lvsstsslys taeekahseq iqklrrelva sqekvatlts qlsanahlva afekslgnmt
     1561 grlqsltmta eqkeseliel retiemlkaq nsaaqaaiqg alngpdhthk dlrirrqhss
     1621 esvssinsat shssigsgnd adskkkkkkn wlrssfkqaf gkkkstkpps shsdieeltd
     1681 sslpsspklp hssgecgtts mkpsqsasai cecteaeaei ilqlkselre kelkltdirl
     1741 ealssahhld qireamnrmq neieilkaen drlkaetgnt gkptrppses ssstsssssr
     1801 qslglslnnl niteavtsdi llddvtdgal hkeghsvkil vtinkgysra kdqkphayli
     1861 gsigvsgktk wdvldgvirr lfkeyvfrvd pttslglssd ciasycigev irahslevpe
     1921 llpcgylvgd nnvitvnlkg veensldsfv fdtlipkpit qryfnllmeh rriilsgpsg
     1981 tgktylanrl aeyiitksgr kktedaiatf nvdhksskdl rqylanlaeq csadnngadl
     2041 pvviildnlh hisslsdifn gflnckynkc pyiigtmnqg vssspnlelh hnfrwvlcan
     2101 htepvkgflg rylrrkliet eieknirnne likiidwipk twhhlnsfle thsssdvtig
     2161 prlflpcpmd vdgsrvwftd lwnyslvpyl leavreglqm ygkrapwedp skwvadtypw
     2221 ssaslqhewp sllqlrpedv gyegyasake gttskhvpqt dtegdplmnm lmrlqeaany
     2281 ssaqscdsds tshhddilds slestl
//
LOCUS       XP_053928768            2306 aa            linear   VRT 09-MAR-2023
DEFINITION  neuron navigator 3 isoform X5 [Cuculus canorus].
ACCESSION   XP_053928768
VERSION     XP_053928768.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072793.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2306
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2306
                     /product="neuron navigator 3 isoform X5"
                     /calculated_mol_wt=247411
     Region          27..129
                     /region_name="CH_NAV3"
                     /note="calponin homology (CH) domain found in neuron
                     navigator 3; cd21286"
                     /db_xref="CDD:409135"
     Site            order(29,83,85..86,89..90,92,101..109,114,116..117,
                     119..120,123..124,127)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409135"
     Region          <154..534
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1519..>1599
                     /region_name="COG4372"
                     /note="Uncharacterized protein, contains DUF3084 domain
                     [Function unknown]"
                     /db_xref="CDD:443500"
     Region          <1956..2193
                     /region_name="McrB"
                     /note="5-methylcytosine-specific restriction endonuclease
                     McrBC, GTP-binding regulatory subunit McrB [Defense
                     mechanisms]; COG1401"
                     /db_xref="CDD:441011"
     CDS             1..2306
                     /gene="NAV3"
                     /coded_by="XM_054072793.1:338..7258"
                     /db_xref="GeneID:104061154"
ORIGIN      
        1 mnvmdlssem skhgrnpish kledqkkiyt dwanhylaks ghkrlikdlq qdiadgvlla
       61 eiiqiianek vedingcprs qsqmienvdv clsflaargv nvqglsaeei rngnlkailg
      121 lffslsrykq qqhhqqqyyq slvelqqqvp sppaetsqsk thqdmqsslt aryatqsnhs
      181 giatsqkkas rlpgpsrvpa agsstkvqga snlnrrsqsf nsidknkppq yangnekads
      241 pkgphpcagm ngnvqhptst gqqqvsaips psaskpwrsk smnvkhsats tmlsvkqpsp
      301 atsptpssdr lkpppsevvk ppssgqksml ekfklvnart alrpplslss gpsdsgredd
      361 tfsecgeidv lsggvnsggs tssspkvspk ltppkagskn lsnkksllqp kdkeeknrdk
      421 nkvctektvk eekdqvtets tkksskiasl ipkgskttaa kkeslipsss gipkpgskvp
      481 takqstpptc tgskevekvr ttkgpqsqpt tksqlnekas pssglasseg kepsgaflgs
      541 stalsasmaa sssqstgngv vqlpqqqqys hpntatvapf iyrtlsends tslppadsct
      601 sptkmdlsfs ktakqcleei sgedpetrrm rtvkniadlr qnleetmssl rgtqishstl
      661 ettfdstvtt evngrsipsl tsrstpvtwr lgqasprlqa gdapslgagy prssasrfih
      721 tdpsrfmytt plrraavsrl gnisqidmse kgsgdldmss evdvggymsd gdilgkslrt
      781 ddinsgymtd gglnlytrsl nripdlaasr dviqrgvhdv tvdadswdds ssvssglsdt
      841 ldnlstddln ttssvssysn itassrknth aqlktdsekr svtdsetwgs ieelkkpeed
      901 fdnsidssgk wkglplglse esekagqkas lsvsqtgswr rgmtaqvgtt qsrhkagtsa
      961 lktpgktdda kasekvktpl kgasiqrsps dagkssgdeg kkppsgigrt tatgsfgfkk
     1021 sgmgsstiit tsgatitsgs atlgkmpkss aiggksnagr ktsldgsqnq ddgilhvnsk
     1081 ttlqyrslpr pskssgsgip grgghrssts sidsnvssks agaaatklre pskigsgrss
     1141 pvtinqtdke kekvavsdse svslssspks sptsasasgt pglrqpgsky pdiasptfrr
     1201 lfgakasgka asapstegvk ptsampspst tlarqgsles pssgtgsmgs aggqsgsssp
     1261 lfskpsdlna dvvslshsla sspasvhsft sgglvwaanl ssssagskdt psyqsmtslh
     1321 tssesidlpl shhgslsglt tstqevqsll mrtgsvrstl sesvqldrnt lpkkglrytp
     1381 ssrqtsqeeg kewlrshstg glqdtgsqsp lvspsamsss atgkyhfsnl vsptnlsqfn
     1441 lpgpsmmrsn sipaqdtsfd lyddsqlcgs atsleerpra ishsgsfrds meevhgssls
     1501 lvsstsslys taeekahseq iqklrrelva sqekvatlts qlsanahlva afekslgnmt
     1561 grlqsltmta eqkeseliel retiemlkaq nsaaqaaiqg alngpdhthk dlrirrqhss
     1621 esvssinsat shssigsgnd adskkkkkkn wlrssfkqaf gkkkstkpps shsdieeltd
     1681 sslpsspklp hssgecgtts mkpsqsasai cecteaeaei ilqlkselre kelkltdirl
     1741 ealssahhld qireamnrmq neieilkaen drlkaetgnt gkptrppses ssstsssssr
     1801 qslglslnnl niteavtsdi llddvtdgal hkeghsvkil vtinkgysra kdqkphayli
     1861 gsigvsgktk wdvldgvirr lfkeyvfrvd pttslglssd ciasycigev irahslevpe
     1921 llpcgylvgd nnvitvnlkg veensldsfv fdtlipkpit qryfnllmeh rriilsgpsg
     1981 tgktylanrl aeyiitksgr kktedaiatf nvdhksskdl rqylanlaeq csadnngadl
     2041 pvviildnlh hisslsdifn gflnckynkc pyiigtmnqg vssspnlelh hnfrwvlcan
     2101 htepvkgflg rylrrkliet eieknirnne likiidwipk twhhlnsfle thsssdvtig
     2161 prlflpcpmd vdgsrvwftd lwnyslvpyl leavreglqm ygkrapwedp skwvadtypw
     2221 ssaslqhewp sllqlrpedv gyegyasake gttskhvpqt dtegdplmnm lmrlqeaany
     2281 ssaqscdsds tshhddilds slestl
//
LOCUS       XP_053928779            2306 aa            linear   VRT 09-MAR-2023
DEFINITION  neuron navigator 3 isoform X5 [Cuculus canorus].
ACCESSION   XP_053928779
VERSION     XP_053928779.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072804.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2306
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2306
                     /product="neuron navigator 3 isoform X5"
                     /calculated_mol_wt=247411
     Region          27..129
                     /region_name="CH_NAV3"
                     /note="calponin homology (CH) domain found in neuron
                     navigator 3; cd21286"
                     /db_xref="CDD:409135"
     Site            order(29,83,85..86,89..90,92,101..109,114,116..117,
                     119..120,123..124,127)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409135"
     Region          <154..534
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1519..>1599
                     /region_name="COG4372"
                     /note="Uncharacterized protein, contains DUF3084 domain
                     [Function unknown]"
                     /db_xref="CDD:443500"
     Region          <1956..2193
                     /region_name="McrB"
                     /note="5-methylcytosine-specific restriction endonuclease
                     McrBC, GTP-binding regulatory subunit McrB [Defense
                     mechanisms]; COG1401"
                     /db_xref="CDD:441011"
     CDS             1..2306
                     /gene="NAV3"
                     /coded_by="XM_054072804.1:334..7254"
                     /db_xref="GeneID:104061154"
ORIGIN      
        1 mnvmdlssem skhgrnpish kledqkkiyt dwanhylaks ghkrlikdlq qdiadgvlla
       61 eiiqiianek vedingcprs qsqmienvdv clsflaargv nvqglsaeei rngnlkailg
      121 lffslsrykq qqhhqqqyyq slvelqqqvp sppaetsqsk thqdmqsslt aryatqsnhs
      181 giatsqkkas rlpgpsrvpa agsstkvqga snlnrrsqsf nsidknkppq yangnekads
      241 pkgphpcagm ngnvqhptst gqqqvsaips psaskpwrsk smnvkhsats tmlsvkqpsp
      301 atsptpssdr lkpppsevvk ppssgqksml ekfklvnart alrpplslss gpsdsgredd
      361 tfsecgeidv lsggvnsggs tssspkvspk ltppkagskn lsnkksllqp kdkeeknrdk
      421 nkvctektvk eekdqvtets tkksskiasl ipkgskttaa kkeslipsss gipkpgskvp
      481 takqstpptc tgskevekvr ttkgpqsqpt tksqlnekas pssglasseg kepsgaflgs
      541 stalsasmaa sssqstgngv vqlpqqqqys hpntatvapf iyrtlsends tslppadsct
      601 sptkmdlsfs ktakqcleei sgedpetrrm rtvkniadlr qnleetmssl rgtqishstl
      661 ettfdstvtt evngrsipsl tsrstpvtwr lgqasprlqa gdapslgagy prssasrfih
      721 tdpsrfmytt plrraavsrl gnisqidmse kgsgdldmss evdvggymsd gdilgkslrt
      781 ddinsgymtd gglnlytrsl nripdlaasr dviqrgvhdv tvdadswdds ssvssglsdt
      841 ldnlstddln ttssvssysn itassrknth aqlktdsekr svtdsetwgs ieelkkpeed
      901 fdnsidssgk wkglplglse esekagqkas lsvsqtgswr rgmtaqvgtt qsrhkagtsa
      961 lktpgktdda kasekvktpl kgasiqrsps dagkssgdeg kkppsgigrt tatgsfgfkk
     1021 sgmgsstiit tsgatitsgs atlgkmpkss aiggksnagr ktsldgsqnq ddgilhvnsk
     1081 ttlqyrslpr pskssgsgip grgghrssts sidsnvssks agaaatklre pskigsgrss
     1141 pvtinqtdke kekvavsdse svslssspks sptsasasgt pglrqpgsky pdiasptfrr
     1201 lfgakasgka asapstegvk ptsampspst tlarqgsles pssgtgsmgs aggqsgsssp
     1261 lfskpsdlna dvvslshsla sspasvhsft sgglvwaanl ssssagskdt psyqsmtslh
     1321 tssesidlpl shhgslsglt tstqevqsll mrtgsvrstl sesvqldrnt lpkkglrytp
     1381 ssrqtsqeeg kewlrshstg glqdtgsqsp lvspsamsss atgkyhfsnl vsptnlsqfn
     1441 lpgpsmmrsn sipaqdtsfd lyddsqlcgs atsleerpra ishsgsfrds meevhgssls
     1501 lvsstsslys taeekahseq iqklrrelva sqekvatlts qlsanahlva afekslgnmt
     1561 grlqsltmta eqkeseliel retiemlkaq nsaaqaaiqg alngpdhthk dlrirrqhss
     1621 esvssinsat shssigsgnd adskkkkkkn wlrssfkqaf gkkkstkpps shsdieeltd
     1681 sslpsspklp hssgecgtts mkpsqsasai cecteaeaei ilqlkselre kelkltdirl
     1741 ealssahhld qireamnrmq neieilkaen drlkaetgnt gkptrppses ssstsssssr
     1801 qslglslnnl niteavtsdi llddvtdgal hkeghsvkil vtinkgysra kdqkphayli
     1861 gsigvsgktk wdvldgvirr lfkeyvfrvd pttslglssd ciasycigev irahslevpe
     1921 llpcgylvgd nnvitvnlkg veensldsfv fdtlipkpit qryfnllmeh rriilsgpsg
     1981 tgktylanrl aeyiitksgr kktedaiatf nvdhksskdl rqylanlaeq csadnngadl
     2041 pvviildnlh hisslsdifn gflnckynkc pyiigtmnqg vssspnlelh hnfrwvlcan
     2101 htepvkgflg rylrrkliet eieknirnne likiidwipk twhhlnsfle thsssdvtig
     2161 prlflpcpmd vdgsrvwftd lwnyslvpyl leavreglqm ygkrapwedp skwvadtypw
     2221 ssaslqhewp sllqlrpedv gyegyasake gttskhvpqt dtegdplmnm lmrlqeaany
     2281 ssaqscdsds tshhddilds slestl
//
LOCUS       XP_053928790            2197 aa            linear   VRT 09-MAR-2023
DEFINITION  neuron navigator 3 isoform X6 [Cuculus canorus].
ACCESSION   XP_053928790
VERSION     XP_053928790.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072815.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2197
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2197
                     /product="neuron navigator 3 isoform X6"
                     /calculated_mol_wt=236668
     Region          79..183
                     /region_name="CH_NAV3"
                     /note="calponin homology (CH) domain found in neuron
                     navigator 3; cd21286"
                     /db_xref="CDD:409135"
     Site            order(79,83,137,139..140,143..144,146,155..163,168,
                     170..171,173..174,177..178,181)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409135"
     Region          <208..588
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1410..>1490
                     /region_name="COG4372"
                     /note="Uncharacterized protein, contains DUF3084 domain
                     [Function unknown]"
                     /db_xref="CDD:443500"
     Region          <1847..2084
                     /region_name="McrB"
                     /note="5-methylcytosine-specific restriction endonuclease
                     McrBC, GTP-binding regulatory subunit McrB [Defense
                     mechanisms]; COG1401"
                     /db_xref="CDD:441011"
     CDS             1..2197
                     /gene="NAV3"
                     /coded_by="XM_054072815.1:206..6799"
                     /db_xref="GeneID:104061154"
ORIGIN      
        1 mpvlgvaskl rqpavgskpv htalpipnlg psgsqqyspk sleltgaess mlscqltlks
       61 tcdfgerral qgktqeieds kiytdwanhy laksghkrli kdlqqdiadg vllaeiiqii
      121 anekveding cprsqsqmie nvdvclsfla argvnvqgls aeeirngnlk ailglffsls
      181 rykqqqhhqq qyyqslvelq qqvpsppaet sqskthqdmq ssltaryatq snhsgiatsq
      241 kkasrlpgps rvpaagsstk vqgasnlnrr sqsfnsidkn kppqyangne kadspkgphp
      301 cagmngnvqh ptstgqqqvs aipspsaskp wrsksmnvkh satstmlsvk qpspatsptp
      361 ssdrlkppps evvkppssgq ksmlekfklv nartalrppl slssgpsdsg reddtfsecg
      421 eidvlsggvn sggstssspk vspkltppka gsknlsnkks llqpkdkeek nrdknkvcte
      481 ktvkeekdqv tetstkkssk iaslipkgsk ttaakkesli psssgipkpg skvptakqst
      541 pptctgskev ekvrttkgpq sqpttksqln ekaspssgla ssegkepsga flgsstalsa
      601 smaasssqst gngvvqlpqq qqyshpntat vapfiyrtls endstslppa dsctsptkmd
      661 lsfsktakqc leeisgedpe trrmrtvkni adlrqnleet msslrgtqis hstlettfds
      721 tvttevngrs ipsltsrstp vtwrlgqasp rlqagdapsl gagyprssas rfihtdpsrf
      781 myttplrraa vsrlgnisqi dmsekgsgdl dmssevdvgg ymsdgdilgk slrtddinsg
      841 ymtdgglnly trslnripdl aasrdviqrg vhdvtvdads wddsssvssg lsdtldnlst
      901 ddlnttssvs sysnitassr knthaqlktd sekrsvtdse twgsieelkk peedfdnsid
      961 ssgkwkglpl glseesekag qkaslsvsqt gswrrgmtaq vgttqsrhka gtsalktpgk
     1021 tddakasekv ktplkgasiq rspsdagkss gdegkkppsg igrttatgsf gfkksgmgss
     1081 tiittsgati tsgsatlgkm pkssaiggks nagrktsldg sqnqddgilh vnskttlqyr
     1141 slprpskssg sgipgrgghr sstssidsnv ssksagaaat klrepskigs grsspvtinq
     1201 tdkekekvav sdsesvslss spkssptsas asgtpglrqp gskypdiasp tfrsvqldrn
     1261 tlpkkglryt pssrqtsqee gkewlrshst gglqdtgsqs plvspsamss satgkyhfsn
     1321 lvsptnlsqf nlpgpsmmrs nsipaqdtsf dlyddsqlcg satsleerpr aishsgsfrd
     1381 smeevhgssl slvsstssly staeekahse qiqklrrelv asqekvatlt sqlsanahlv
     1441 aafekslgnm tgrlqsltmt aeqkeselie lretiemlka qnsaaqaaiq galngpdhth
     1501 kdlrirrqhs sesvssinsa tshssigsgn dadskkkkkk nwlrssfkqa fgkkkstkpp
     1561 sshsdieelt dsslpsspkl phssgecgtt smkpsqsasa icecteaeae iilqlkselr
     1621 ekelkltdir lealssahhl dqireamnrm qneieilkae ndrlkaetgn tgkptrppse
     1681 sssstsssss rqslglslnn lniteavtsd illddvtdga lhkeghsvki lvtinkgysr
     1741 akdqkphayl igsigvsgkt kwdvldgvir rlfkeyvfrv dpttslglss dciasycige
     1801 virahslevp ellpcgylvg dnnvitvnlk gveensldsf vfdtlipkpi tqryfnllme
     1861 hrriilsgps gtgktylanr laeyiitksg rkktedaiat fnvdhksskd lrqylanlae
     1921 qcsadnngad lpvviildnl hhisslsdif ngflnckynk cpyiigtmnq gvssspnlel
     1981 hhnfrwvlca nhtepvkgfl grylrrklie teieknirnn elikiidwip ktwhhlnsfl
     2041 ethsssdvti gprlflpcpm dvdgsrvwft dlwnyslvpy lleavreglq mygkrapwed
     2101 pskwvadtyp wssaslqhew psllqlrped vgyegyasak egttskhvpq tdtegdplmn
     2161 mlmrlqeaan yssaqscdsd stshhddild sslestl
//
LOCUS       XP_053928801            2183 aa            linear   VRT 09-MAR-2023
DEFINITION  neuron navigator 3 isoform X7 [Cuculus canorus].
ACCESSION   XP_053928801
VERSION     XP_053928801.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072826.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2183
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2183
                     /product="neuron navigator 3 isoform X7"
                     /calculated_mol_wt=235117
     Region          79..183
                     /region_name="CH_NAV3"
                     /note="calponin homology (CH) domain found in neuron
                     navigator 3; cd21286"
                     /db_xref="CDD:409135"
     Site            order(79,83,137,139..140,143..144,146,155..163,168,
                     170..171,173..174,177..178,181)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409135"
     Region          <208..588
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1396..>1476
                     /region_name="COG4372"
                     /note="Uncharacterized protein, contains DUF3084 domain
                     [Function unknown]"
                     /db_xref="CDD:443500"
     Region          <1833..2070
                     /region_name="McrB"
                     /note="5-methylcytosine-specific restriction endonuclease
                     McrBC, GTP-binding regulatory subunit McrB [Defense
                     mechanisms]; COG1401"
                     /db_xref="CDD:441011"
     CDS             1..2183
                     /gene="NAV3"
                     /coded_by="XM_054072826.1:206..6757"
                     /db_xref="GeneID:104061154"
ORIGIN      
        1 mpvlgvaskl rqpavgskpv htalpipnlg psgsqqyspk sleltgaess mlscqltlks
       61 tcdfgerral qgktqeieds kiytdwanhy laksghkrli kdlqqdiadg vllaeiiqii
      121 anekveding cprsqsqmie nvdvclsfla argvnvqgls aeeirngnlk ailglffsls
      181 rykqqqhhqq qyyqslvelq qqvpsppaet sqskthqdmq ssltaryatq snhsgiatsq
      241 kkasrlpgps rvpaagsstk vqgasnlnrr sqsfnsidkn kppqyangne kadspkgphp
      301 cagmngnvqh ptstgqqqvs aipspsaskp wrsksmnvkh satstmlsvk qpspatsptp
      361 ssdrlkppps evvkppssgq ksmlekfklv nartalrppl slssgpsdsg reddtfsecg
      421 eidvlsggvn sggstssspk vspkltppka gsknlsnkks llqpkdkeek nrdknkvcte
      481 ktvkeekdqv tetstkkssk iaslipkgsk ttaakkesli psssgipkpg skvptakqst
      541 pptctgskev ekvrttkgpq sqpttksqln ekaspssgla ssegkepsga flgsstalsa
      601 smaasssqst gngvvqlpqq qqyshpntat vapfiyrtls endstslppa dsctsptkmd
      661 lsfsktakqc leeisgedpe trrmrtvkni adlrqnleet msslrgtqis hstlettfds
      721 tvttevngrs ipsltsrstp vtwrlgqasp rlqagdapsl gagyprssas rfihtdpsrf
      781 myttplrraa vsrlgnisqi dmsekgsgdl dmssevdvgg ymsdgdilgk slrtddinsg
      841 ymtdgglnly trslnripdl aasrdviqrg vhdvtvdads wddsssvssg lsdtldnlst
      901 ddlnttssvs sysnitassr knthaqlktd sekrsvtdse twgsieelkk peedfdnsid
      961 ssgkwkglpl glseesekag qkaslsvsqt gswrrgmtaq vgttqsrhka gtsalktpgk
     1021 tddakasekv ktplkgasiq rspsdagkss gdegkkppsg igrttatgsf gfkksgmgss
     1081 tiittsgati tsgsatlgkm pkssaiggks nagrktsldg sqnqddgilh vnskttlqyr
     1141 slprpskssg sgipgrgghr sstssidsnv ssksagaaat klrepskigs grsspvtinq
     1201 tdkekekvav sdsesvslss spkssptsas asgtpglrqp gskypdiasp tfrrytpssr
     1261 qtsqeegkew lrshstgglq dtgsqsplvs psamsssatg kyhfsnlvsp tnlsqfnlpg
     1321 psmmrsnsip aqdtsfdlyd dsqlcgsats leerpraish sgsfrdsmee vhgsslslvs
     1381 stsslystae ekahseqiqk lrrelvasqe kvatltsqls anahlvaafe kslgnmtgrl
     1441 qsltmtaeqk eselielret iemlkaqnsa aqaaiqgaln gpdhthkdlr irrqhssesv
     1501 ssinsatshs sigsgndads kkkkkknwlr ssfkqafgkk kstkppsshs dieeltdssl
     1561 psspklphss gecgttsmkp sqsasaicec teaeaeiilq lkselrekel kltdirleal
     1621 ssahhldqir eamnrmqnei eilkaendrl kaetgntgkp trppsessss tsssssrqsl
     1681 glslnnlnit eavtsdilld dvtdgalhke ghsvkilvti nkgysrakdq kphayligsi
     1741 gvsgktkwdv ldgvirrlfk eyvfrvdptt slglssdcia sycigevira hslevpellp
     1801 cgylvgdnnv itvnlkgvee nsldsfvfdt lipkpitqry fnllmehrri ilsgpsgtgk
     1861 tylanrlaey iitksgrkkt edaiatfnvd hksskdlrqy lanlaeqcsa dnngadlpvv
     1921 iildnlhhis slsdifngfl nckynkcpyi igtmnqgvss spnlelhhnf rwvlcanhte
     1981 pvkgflgryl rrklieteie knirnnelik iidwipktwh hlnsfleths ssdvtigprl
     2041 flpcpmdvdg srvwftdlwn yslvpyllea vreglqmygk rapwedpskw vadtypwssa
     2101 slqhewpsll qlrpedvgye gyasakegtt skhvpqtdte gdplmnmlmr lqeaanyssa
     2161 qscdsdstsh hddildssle stl
//
LOCUS       XP_053928811            2148 aa            linear   VRT 09-MAR-2023
DEFINITION  neuron navigator 3 isoform X8 [Cuculus canorus].
ACCESSION   XP_053928811
VERSION     XP_053928811.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072836.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2148
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2148
                     /product="neuron navigator 3 isoform X8"
                     /calculated_mol_wt=229343
     Region          <76..376
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1361..>1441
                     /region_name="COG4372"
                     /note="Uncharacterized protein, contains DUF3084 domain
                     [Function unknown]"
                     /db_xref="CDD:443500"
     Region          <1798..2035
                     /region_name="McrB"
                     /note="5-methylcytosine-specific restriction endonuclease
                     McrBC, GTP-binding regulatory subunit McrB [Defense
                     mechanisms]; COG1401"
                     /db_xref="CDD:441011"
     CDS             1..2148
                     /gene="NAV3"
                     /coded_by="XM_054072836.1:16..6462"
                     /db_xref="GeneID:104061154"
ORIGIN      
        1 mavpgaslkc ltaryatqsn hsgiatsqkk asrlpgpsrv paagsstkvq gasnlnrrsq
       61 sfnsidknkp pqyangneka dspkgphpca gmngnvqhpt stgqqqvsai pspsaskpwr
      121 sksmnvkhsa tstmlsvkqp spatsptpss drlkpppsev vkppssgqks mlekfklvna
      181 rtalrpplsl ssgpsdsgre ddtfsecgei dvlsggvnsg gstssspkvs pkltppkags
      241 knlsnkksll qpkdkeeknr dknkvctekt vkeekdqvte tstkksskia slipkgsktt
      301 aakkeslips ssgipkpgsk vptakqstpp tctgskevek vrttkgpqsq pttksqlnek
      361 aspssglass egkepsgafl gsstalsasm aasssqstgn gvvqlpqqqq yshpntatva
      421 pfiyrtlsen dstslppads ctsptkmdls fsktakqcle eisgedpetr rmrtvkniad
      481 lrqnleetms slrgtqishs tlettfdstv ttevngrsip sltsrstpvt wrlgqasprl
      541 qagdapslga gyprssasrf ihtdpsrfmy ttplrraavs rlgnisqidm sekgsgdldm
      601 ssevdvggym sdgdilgksl rtddinsgym tdgglnlytr slnripdlaa srdviqrgvh
      661 dvtvdadswd dsssvssgls dtldnlstdd lnttssvssy snitassrkn thaqlktdse
      721 krsvtdsetw gsieelkkpe edfdnsidss gkwkglplgl seesekagqk aslsvsqtgs
      781 wrrgmtaqvg ttqsrhkagt salktpgktd dakasekvkt plkgasiqrs psdagkssgd
      841 egkkppsgig rttatgsfgf kksgmgssti ittsgatits gsatlgkmpk ssaiggksna
      901 grktsldgsq nqddgilhvn skttlqyrsl prpskssgsg ipgrgghrss tssidsnvss
      961 ksagaaatkl repskigsgr sspvtinqtd kekekvavsd sesvslsssp kssptsasas
     1021 gtpglrqpgs kypdiasptf rrlfgakasg kaasapsteg vkptsampsp sttlarqgsl
     1081 espssgtgsm gsaggqsgss splfskpsdl nadvvslshs lasspasvhs ftsgglvwaa
     1141 nlssssagsk dtpsyqsmts lhtssesidl plshhgslsg lttstqevqs llmrtgsvrs
     1201 tlsesvqldr ntlpkkglry tpssrqtsqe egkewlrshs tgglqdtgsq splvspsams
     1261 ssatgkyhfs nlvsptnlsq fnlpgpsmmr snsipaqdts fdlyddsqlc gsatsleerp
     1321 raishsgsfr dsmeevhgss lslvsstssl ystaeekahs eqiqklrrel vasqekvatl
     1381 tsqlsanahl vaafekslgn mtgrlqsltm taeqkeseli elretiemlk aqnsaaqaai
     1441 qgalngpdht hkdlrirrqh ssesvssins atshssigsg ndadskkkkk knwlrssfkq
     1501 afgkkkstkp psshsdieel tdsslpsspk lphssgecgt tsmkpsqsas aicecteaea
     1561 eiilqlksel rekelkltdi rlealssahh ldqireamnr mqneieilka endrlkaetg
     1621 ntgkptrpps esssstssss srqslglsln nlniteavts dillddvtdg alhkeghsvk
     1681 ilvtinkgys rakdqkphay ligsigvsgk tkwdvldgvi rrlfkeyvfr vdpttslgls
     1741 sdciasycig evirahslev pellpcgylv gdnnvitvnl kgveenslds fvfdtlipkp
     1801 itqryfnllm ehrriilsgp sgtgktylan rlaeyiitks grkktedaia tfnvdhkssk
     1861 dlrqylanla eqcsadnnga dlpvviildn lhhisslsdi fngflnckyn kcpyiigtmn
     1921 qgvssspnle lhhnfrwvlc anhtepvkgf lgrylrrkli eteieknirn nelikiidwi
     1981 pktwhhlnsf lethsssdvt igprlflpcp mdvdgsrvwf tdlwnyslvp ylleavregl
     2041 qmygkrapwe dpskwvadty pwssaslqhe wpsllqlrpe dvgyegyasa kegttskhvp
     2101 qtdtegdplm nmlmrlqeaa nyssaqscds dstshhddil dsslestl
//
LOCUS       XP_009555117             938 aa            linear   VRT 09-MAR-2023
DEFINITION  WD repeat-containing protein 3 [Cuculus canorus].
ACCESSION   XP_009555117
VERSION     XP_009555117.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556822.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555117.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..938
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..938
                     /product="WD repeat-containing protein 3"
                     /calculated_mol_wt=105219
     Region          49..616
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          68..104
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          111..146
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          152..188
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          402..697
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cd00200"
                     /db_xref="CDD:238121"
     Site            order(409,427,436..437,450..451,466,470,476..477,489..490,
                     507,512,518..519,537,560,565,571..572,584..585,603,607,
                     613..614,626..627,644,649,655..656,668..669,687,691,697)
                     /site_type="active"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     Region          415..449
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          454..489
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          495..537
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          547..583
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          590..625
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          631..667
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          673..699
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          799..902
                     /region_name="Utp12"
                     /note="Dip2/Utp12 Family; pfam04003"
                     /db_xref="CDD:461125"
     CDS             1..938
                     /gene="WDR3"
                     /coded_by="XM_009556822.2:54..2870"
                     /db_xref="GeneID:104055663"
ORIGIN      
        1 mgltrqylry apaalfgvvg sargnatfvg lrgewgrcva vpacehvfvw dtrkgekvli
       61 lkglkqevsc lcpspdglhl avgyedgsir ifsllngean itfnghkaav talqydhlgg
      121 rlvsgskdtd vivwdvines glyrlrghkd avtqvlflke knllvtsgkd tlvkwwhldt
      181 qhcfktlvgh raevwgmali seekrlitgs adselrvwdi tyiqevkdpd epeskktkgs
      241 sleaeentee detleldehp eeriikcskv gsimregrdr vvslatdrtg kilachgtda
      301 vlevftvlse eevqkklekk mkkakkknkq nseedpeqsv elslqeeiqr itnikasski
      361 ksfdlilspk gelkivlllq nniiesynln lsaqvpqavh askitigghr sdvrtlafss
      421 dniailsasa esvkiwnrst lqcirtmdce yalcslfvpg drqvivgtkt gklqlydlas
      481 gslmealnah dgavwsials pdqhgfvtgg adkcvkfwef efvkdessaq krlsmkhvrv
      541 lqldedvlcv ryspnqklla vslldctvki fyvdtlkffl slyghklpvl cmdisydgtl
      601 iatgsadrnv kiwgldfgdc hrslfahdds vmylqfvaks hlfftagkds kikqwdadkf
      661 ehiqtleghh qevwclalsp ngdyvvsash dkslrlwgrt replvleder emqreaeyee
      721 svakeeqpvv agetqgetgl agkktietik aaerimeaie lyreetaklk ehkaickaag
      781 kevpfaanpi lraygnitps ayvlevfkkv ksseleesll vlpfsyvpdl lrlfneyihl
      841 gsdvellcra llfllkihfg qitsnhmlvt viedlkktti srvseardvl gfnmaglqyl
      901 kreieakdev tffadatdrf eekkrkrkkk ekmvlavl
//
LOCUS       XP_053928830            2193 aa            linear   VRT 09-MAR-2023
DEFINITION  sperm-associated antigen 17 [Cuculus canorus].
ACCESSION   XP_053928830
VERSION     XP_053928830.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072855.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2193
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2193
                     /product="sperm-associated antigen 17"
                     /calculated_mol_wt=245981
     Region          2047..2151
                     /region_name="PapD-like"
                     /note="Flagellar-associated PapD-like; pfam14874"
                     /db_xref="CDD:373355"
     CDS             1..2193
                     /gene="SPAG17"
                     /coded_by="XM_054072855.1:14..6595"
                     /db_xref="GeneID:104055669"
ORIGIN      
        1 mgpkrartgg dasavaagss weaalvaapf eeddwkpsia fvvgtkiede ihtkalslav
       61 qvpqrklfsv vtredifrqi kesgnqkgkk vkdvpmyyev telakaflds geeipitltg
      121 kllkfqllcl kqkdlqrrea ekkaeeeqqk gkdgakakss sktaekerkg kktevgslap
      181 gsvkkdtqlk rrqeveekdk yiddepddga hhyfiilnfh nlqllpvmse lginissiir
      241 issenykplq myleainlqe qsllspkvve aekikrgeai kdletfwkyl epvlnsgkpg
      301 sslfdvarlh hvvkesafpp dwsdremlla fgtvlfesia clmydcldwr rqhcnylent
      361 kfinvpvlsr sestqlpipe asvqpesrat pskkkgeaee ilpivilsqe eeasiltpsv
      421 dmryyndlls qipeeycsvp lilncileqv iaseedltpp slvvpeprad glhhaiaghi
      481 asvlpslsvs qsekkhlyey fspqysekkt vtskypllfn hhdiqaqrlh llkaqrnlnp
      541 ekieremmdk lpltklihfp lpstedntkr larvhelmhy ctsellswae verafrvftf
      601 eslrltglsd sgllessgsm vegdsevsyi pwdnpaqfar qlrqlflmek klsgksptgs
      661 ghteqngkde qdgladtvln keldlifsdm vspenyglgp nleeikktqr rcltdwnfde
      721 hfqphillqv lhtasqeyrc idyfyhtqdn allmvlhnpm nqhrlcqetw dialhsnvgf
      781 rnylelvans ikdwvkeeed kyqeekmake ieslklqkak aegsfkfsac tgfpgkaesn
      841 isgpdsimkt isesqsnnek ipfiregslk awkqeqnqlr eeeqlkelkk rkkeklggkk
      901 kereiiihee gkgsnensst ekfkdepakv peleehpsip ephsekvykf lgyntgedli
      961 qvsgsnqylf psdggqiqve kiefvkgltl vktkvvkdnh nffihiidpk knlkevevqe
     1021 teeqktrsgk lknqkkavsk fgsfsatlen giqlslsyyg ptgktaddet dtvlerilni
     1081 psvhtptiis patsasgkkd ksvkqksgks aspakashsk tglpspdglv kqegkmeiee
     1141 safqtqamsn glafpslnvs cpnglvltfl resfgdlkge attaeaekev vekskakade
     1201 aeeeevekge tkaneaeeee vekgetkane akenevmese gkehevtege ikhedtenkq
     1261 arqrtveilv rqsypqrvkn shlytsvarq teqevsrvit sqgtvikymm dgstqvlfad
     1321 gtvsrspgsg pvlpphtvpc rmeplvelep shetstkrgk gnsrnsllqp skdklfeita
     1381 pglvnseqpe enqagtwitt tpsgirvgte ganridlkpl liyratdpad gtvmtvrdde
     1441 viivekldgs rvvdhadgtr ittfyqkdep seaftrkvkf vrvenaefat vtancddstc
     1501 ctifadgtsi iakaqgtyqv lpiksgslfi dedcsavytc evhnfiskke ekqagvyimk
     1561 htsrtvcetv dpkgnlfkvm adgstsvcvs ntgfddkedr ssasaipevn kpitydehvp
     1621 rffiihadgs giellrsrdv lkylgeacsd paaavlqdpv qeypgvlsis vlrplaeasp
     1681 wvtkekpksi vppnlqsstw dtfspperki tgpsvrthvw rglsigsreq mclpvavqkc
     1741 pnklqirqlf qykplsdelr eklqlslkey idnilkwene leemnvkepr teeekenaas
     1801 lfkmfttfpy wekstenlsd gahitelyeq amashhqcqt ektitkqred qqqrfspkgv
     1861 tpvskwhsrl eehrkeldag kkyftairkk iippyfesef gkefflkefp dlealstelr
     1921 pvqkkksghf plemekkpsr gseclstsds lpspdpllqa hlkqsegsss ttdlnkaars
     1981 eetsfqrkvq sllvnaagqp rkekvklpss lrgrkpnsip nkkiedpvag rvktsslatp
     2041 rqhlsgfhli pprvtfgvlk egctyvttvt lknvgvnfsr frvkqpplht glrvmytpgp
     2101 vaaglqvele ieifamvtrg ednggleeis hdieiltete tlllpvratv lindiyecrp
     2161 qgypqggvaa tvqavpaspk prfritlprk lss
//
LOCUS       XP_053928845             404 aa            linear   VRT 09-MAR-2023
DEFINITION  S-adenosylmethionine sensor upstream of mTORC1 [Cuculus canorus].
ACCESSION   XP_053928845
VERSION     XP_053928845.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072870.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..404
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..404
                     /product="S-adenosylmethionine sensor upstream of mTORC1"
                     /calculated_mol_wt=45802
     CDS             1..404
                     /gene="BMT2"
                     /coded_by="XM_054072870.1:62..1276"
                     /db_xref="GeneID:104064332"
ORIGIN      
        1 maaapqsrpg gaaaappppp pppeqerkle qeklsgvvks vhrrlrkkyr evgdfdkiwr
       61 ehcedeetlc eyavamknla dnhwaktceg egriewccsv creyfqnggk rkalekdekr
      121 allaskttpa lnipqapkie gplpnfgltn hetiteellh slgkirlldv gscfnpflkf
      181 eefltvgidi vpavesvykc dflnlqiqqp lqlaqdaida flkqlknpid slpgelfhvv
      241 vfslllsyfp spyqrwicck kahellvlng lllvitpdss hqnrrammmk swkiaieslg
      301 fkrfkyskfs hmhlmafrkt slqttsdlvs rnypgmlyip qdfnsvedee ysntscyvrs
      361 dtedeqlayg fmelpdapyd sdsgesqsss ipfyeledpi llls
//
LOCUS       XP_009562757            1831 aa            linear   VRT 09-MAR-2023
DEFINITION  AT-rich interactive domain-containing protein 2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009562757
VERSION     XP_009562757.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009564462.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1831
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1831
                     /product="AT-rich interactive domain-containing protein 2
                     isoform X1"
                     /calculated_mol_wt=197435
     Region          15..102
                     /region_name="ARID_ARID2"
                     /note="ARID/BRIGHT DNA binding domain of AT-rich
                     interactive domain-containing protein 2 (ARID2) and
                     similar proteins; cd16866"
                     /db_xref="CDD:350630"
     Site            order(36..42,67,69..70,73,84,86..88,90)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:350630"
     Region          518..600
                     /region_name="RFX_DNA_binding"
                     /note="RFX DNA-binding domain; pfam02257"
                     /db_xref="CDD:460512"
     Region          629..1004
                     /region_name="DUF5585"
                     /note="Family of unknown function (DUF5585); pfam17823"
                     /db_xref="CDD:465521"
     Region          882..1222
                     /region_name="SP1-4_N"
                     /note="N-terminal domain of transcription factor
                     Specificity Proteins (SP) 1-4; cl41773"
                     /db_xref="CDD:425404"
     CDS             1..1831
                     /gene="ARID2"
                     /coded_by="XM_009564462.2:384..5879"
                     /db_xref="GeneID:104062410"
ORIGIN      
        1 manstgknha dqrrkglafl delrqfhhsr gspfkkipvv ggkeldlhal ytrvttlggf
       61 gkvseknqwg eiveefnfpr scsnaafalk qyylryleky ekvhhfgeed devqpgnpkp
      121 qlpigaipts ynyqqhsvsd ylrqsyglsm dfnspndynk lvlsllsglp nevdfainvc
      181 tllsneskhv mqlekdpkii tlllanagvf ddtlgsfsav fgdewkektd rdfvkfwkdi
      241 vedievrdli sdrsksqdip seewiweslf hpprklgind iegqrvlqia vilrnlsfee
      301 gnvkllaanr tclrflllsa hshfislrql gldtlgniaa ellldpvdfk tthlmfhtvt
      361 kclmsrdrfl kmrgmeilan lckaedngvl iceyvdqesy keiichltlp dvllvisale
      421 vlymltemge vacskiakve ksidtlvclv smdiqmfgpd altavklieh qciqqgvpdv
      481 rppvmdhgss pahatgvpas rtaphvappp giveidsekf acqwlnahfe vnldcsvsra
      541 emyseylstc sklarggilt stgfykclrt vfpnhtvkrv edpsnngqah ihvvgvkrra
      601 iplpiqmyyq qqptpstpvi rvdsipdvss spspagiphg lpsvgnhyqr tpinqsstlt
      661 atqmsfpiqg vhtvaqtvsr ipqnpsvhtq qqnapvtviq nkgpiscevv katviqssvp
      721 qsavpvtiav ggapqaanqn hsttgqqpsv tvvgsqtllh hqpviqqqsp lhavvpgqip
      781 sgtpvtviqq avpqghifgr vqnipacssa vsqgqqlist ssqpghtssq qssagnqqqd
      841 tviiapqqyv ttsasnivsa ttvqnfqvaa gqmvtiagvq npptsrvgfq niapkplpsq
      901 qvppavgqqp mqpqqqpppp sqqsvvivsq paqqgqtyap aihqivlanp asipagqtvq
      961 ltgqpgitps sspspgpvtn nqiptvmsps pttpqsqgpp ptvsqmlsvk rqqqqqqqhs
     1021 passqqqvqv qqmqvqsqqa ntgvgqpnsg esslikqlll pkrgpstpgg klilpapqip
     1081 ppnnarapsp qvvyqmannq apgfgvqgqs paqqllvgqq nvqlvpsamq pqgavqtvpi
     1141 snlqilpgql isnspatifq gttgnqvtit vvpntsfata tvsqgnatqi iapagiavsg
     1201 aqtgvglqmq tlpatqapsa gqspctaapp fkgdkiicqk eeeakeatgl hiherkievm
     1261 enpscrreaa ntsngdaken emqvgsllng rkysdsslpp snsgktqnea nqcsqvsngp
     1321 slemgengap gkqnfeqvdt qeiksdlkkp lvngicdfdk gddshlskni pnhktsnhvg
     1381 ngeissveqq gnldatqqdt akgdqgeris ngpvltlsss pvvsgtqeaa klltqqlsgt
     1441 ntdlpngpla sslnsdvpqq rpsvvvspqs tasviqghqi iavphsgprv sqstlssevr
     1501 stngtaeckt vkrpaedndr etvpgipnkv gvrivtisdp nnagcsatmv avpagadpst
     1561 vakvaiesav qqkqqqptty iqsmvtqstp atsiptvqvq gqqinlqpps ytaasqhaeq
     1621 mkkpgqnfmc lwqsckkwfq tpsqvfyhaa tehggkdvyp gqclwegcep fqrqrfsfit
     1681 hlqdkhcsrd allaglkqde hgqagnqkps nkqpvaggat stpraqkaiv nhpsaalmal
     1741 rrgsrnlvfr dftdekegpi tkhirltaal ilknigkyse cgrrllkrhe nhlsvlaisn
     1801 measstlakc lyelnftvqs kehekdseml q
//
LOCUS       XP_053928868            1796 aa            linear   VRT 09-MAR-2023
DEFINITION  AT-rich interactive domain-containing protein 2 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053928868
VERSION     XP_053928868.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072893.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1796
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1796
                     /product="AT-rich interactive domain-containing protein 2
                     isoform X2"
                     /calculated_mol_wt=193043
     Region          <20..67
                     /region_name="ARID"
                     /note="ARID/BRIGHT DNA binding domain family; cl28902"
                     /db_xref="CDD:355778"
     Region          483..565
                     /region_name="RFX_DNA_binding"
                     /note="RFX DNA-binding domain; pfam02257"
                     /db_xref="CDD:460512"
     Region          594..969
                     /region_name="DUF5585"
                     /note="Family of unknown function (DUF5585); pfam17823"
                     /db_xref="CDD:465521"
     Region          858..1187
                     /region_name="SP1-4_N"
                     /note="N-terminal domain of transcription factor
                     Specificity Proteins (SP) 1-4; cl41773"
                     /db_xref="CDD:425404"
     CDS             1..1796
                     /gene="ARID2"
                     /coded_by="XM_054072893.1:16..5406"
                     /db_xref="GeneID:104062410"
ORIGIN      
        1 mlaagggagr cpagpsrgkt tkgapktvse knqwgeivee fnfprscsna afalkqyylr
       61 ylekyekvhh fgeeddevqp gnpkpqlpig aiptsynyqq hsvsdylrqs yglsmdfnsp
      121 ndynklvlsl lsglpnevdf ainvctllsn eskhvmqlek dpkiitllla nagvfddtlg
      181 sfsavfgdew kektdrdfvk fwkdivedie vrdlisdrsk sqdipseewi weslfhpprk
      241 lgindiegqr vlqiavilrn lsfeegnvkl laanrtclrf lllsahshfi slrqlgldtl
      301 gniaaellld pvdfktthlm fhtvtkclms rdrflkmrgm eilanlckae dngvliceyv
      361 dqesykeiic hltlpdvllv isalevlyml temgevacsk iakveksidt lvclvsmdiq
      421 mfgpdaltav kliehqciqq gvpdvrppvm dhgsspahat gvpasrtaph vapppgivei
      481 dsekfacqwl nahfevnldc svsraemyse ylstcsklar ggiltstgfy kclrtvfpnh
      541 tvkrvedpsn ngqahihvvg vkrraiplpi qmyyqqqptp stpvirvdsi pdvssspspa
      601 giphglpsvg nhyqrtpinq sstltatqms fpiqgvhtva qtvsripqnp svhtqqqnap
      661 vtviqnkgpi scevvkatvi qssvpqsavp vtiavggapq aanqnhsttg qqpsvtvvgs
      721 qtllhhqpvi qqqsplhavv pgqipsgtpv tviqqavpqg hifgrvqnip acssavsqgq
      781 qlistssqpg htssqqssag nqqqdtviia pqqyvttsas nivsattvqn fqvaagqmvt
      841 iagvqnppts rvgfqniapk plpsqqvppa vgqqpmqpqq qppppsqqsv vivsqpaqqg
      901 qtyapaihqi vlanpasipa gqtvqltgqp gitpssspsp gpvtnnqipt vmspspttpq
      961 sqgppptvsq mlsvkrqqqq qqqhspassq qqvqvqqmqv qsqqantgvg qpnsgessli
     1021 kqlllpkrgp stpggklilp apqipppnna rapspqvvyq mannqapgfg vqgqspaqql
     1081 lvgqqnvqlv psamqpqgav qtvpisnlqi lpgqlisnsp atifqgttgn qvtitvvpnt
     1141 sfatatvsqg natqiiapag iavsgaqtgv glqmqtlpat qapsagqspc taappfkgdk
     1201 iicqkeeeak eatglhiher kievmenpsc rreaantsng dakenemqvg sllngrkysd
     1261 sslppsnsgk tqneanqcsq vsngpslemg engapgkqnf eqvdtqeiks dlkkplvngi
     1321 cdfdkgddsh lsknipnhkt snhvgngeis sveqqgnlda tqqdtakgdq gerisngpvl
     1381 tlssspvvsg tqeaaklltq qlsgtntdlp ngplasslns dvpqqrpsvv vspqstasvi
     1441 qghqiiavph sgprvsqstl ssevrstngt aecktvkrpa edndretvpg ipnkvgvriv
     1501 tisdpnnagc satmvavpag adpstvakva iesavqqkqq qpttyiqsmv tqstpatsip
     1561 tvqvqgqqin lqppsytaas qhaeqmkkpg qnfmclwqsc kkwfqtpsqv fyhaatehgg
     1621 kdvypgqclw egcepfqrqr fsfithlqdk hcsrdallag lkqdehgqag nqkpsnkqpv
     1681 aggatstpra qkaivnhpsa almalrrgsr nlvfrdftde kegpitkhir ltaalilkni
     1741 gkysecgrrl lkrhenhlsv laisnmeass tlakclyeln ftvqskehek dsemlq
//
LOCUS       XP_053928882             686 aa            linear   VRT 09-MAR-2023
DEFINITION  tRNA wybutosine-synthesizing protein 4 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053928882
VERSION     XP_053928882.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072907.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="tRNA wybutosine-synthesizing protein 4 isoform
                     X1"
                     /calculated_mol_wt=75537
     Region          33..276
                     /region_name="YktD"
                     /note="O-Methyltransferase involved in polyketide
                     biosynthesis [Secondary metabolites biosynthesis,
                     transport and catabolism]; COG3315"
                     /db_xref="CDD:442544"
     Region          <354..619
                     /region_name="NanM"
                     /note="N-acetylneuraminic acid mutarotase [Cell
                     wall/membrane/envelope biogenesis]; COG3055"
                     /db_xref="CDD:442289"
     Region          534..583
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..686
                     /gene="LCMT2"
                     /coded_by="XM_054072907.1:17..2077"
                     /db_xref="GeneID:104056263"
ORIGIN      
        1 mgrerrsaqv qstggssavs kasaaargyi qdrflgllag pgrrraplvh rgyyirarav
       61 dhciqdflqk tqshprtqil slgagfdslf frlkdlgllr rtvvyevdfp svarrkaali
      121 rrteelsall gdiggeglgm astegfegav agegyrllgv dlselshlek aleeagldrg
      181 vptvvlaevv ltymetsrsd aliqwaaerf sqvcfllyeq mhpedpfgrv mqrhfrqlns
      241 alrsletype redqerrflq rgwsecsvvd mneffttcta eeeqrrvqal epfdeyeewh
      301 lkcshyfvla askgmeppwt pllptltgsp hhgptrvvgs vpaaacasnp dslglrrygh
      361 rsvllkpdvv lttggfgedd gqhcrvrtfh vlvkreggwr aggvrqetpd trwgerlyht
      421 alclsddvvl lvggrtspss sgvatvwlkv sgtsaewdaa evtvepvdlp avaeppshrw
      481 rhsatqvtfq genflflygg rsatepvlgd wcflripels ytvipvegav perrhshgac
      541 aweggavivg glgadekplg slfllrelqr gfgwqpmeth pplvprysht ahvhdgklll
      601 vggvwlrsss vpgvtvvdlt tglcldytid veplewplml hnhssvllpd ekellvlggg
      661 gncfsfgthl nsepvlldln silttp
//
LOCUS       XP_053928890             685 aa            linear   VRT 09-MAR-2023
DEFINITION  tRNA wybutosine-synthesizing protein 4 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053928890
VERSION     XP_053928890.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072915.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..685
                     /product="tRNA wybutosine-synthesizing protein 4 isoform
                     X2"
                     /calculated_mol_wt=75409
     Region          32..275
                     /region_name="YktD"
                     /note="O-Methyltransferase involved in polyketide
                     biosynthesis [Secondary metabolites biosynthesis,
                     transport and catabolism]; COG3315"
                     /db_xref="CDD:442544"
     Region          <353..618
                     /region_name="NanM"
                     /note="N-acetylneuraminic acid mutarotase [Cell
                     wall/membrane/envelope biogenesis]; COG3055"
                     /db_xref="CDD:442289"
     Region          533..582
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..685
                     /gene="LCMT2"
                     /coded_by="XM_054072915.1:30..2087"
                     /db_xref="GeneID:104056263"
ORIGIN      
        1 mgrerrsavq stggssavsk asaaargyiq drflgllagp grrraplvhr gyyiraravd
       61 hciqdflqkt qshprtqils lgagfdslff rlkdlgllrr tvvyevdfps varrkaalir
      121 rteelsallg diggeglgma stegfegava gegyrllgvd lselshleka leeagldrgv
      181 ptvvlaevvl tymetsrsda liqwaaerfs qvcfllyeqm hpedpfgrvm qrhfrqlnsa
      241 lrsletyper edqerrflqr gwsecsvvdm neffttctae eeqrrvqale pfdeyeewhl
      301 kcshyfvlaa skgmeppwtp llptltgsph hgptrvvgsv paaacasnpd slglrryghr
      361 svllkpdvvl ttggfgeddg qhcrvrtfhv lvkreggwra ggvrqetpdt rwgerlyhta
      421 lclsddvvll vggrtspsss gvatvwlkvs gtsaewdaae vtvepvdlpa vaeppshrwr
      481 hsatqvtfqg enflflyggr satepvlgdw cflripelsy tvipvegavp errhshgaca
      541 weggavivgg lgadekplgs lfllrelqrg fgwqpmethp plvpryshta hvhdgklllv
      601 ggvwlrsssv pgvtvvdltt glcldytidv eplewplmlh nhssvllpde kellvlgggg
      661 ncfsfgthln sepvlldlns ilttp
//
LOCUS       XP_053928899             677 aa            linear   VRT 09-MAR-2023
DEFINITION  tRNA wybutosine-synthesizing protein 4 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053928899
VERSION     XP_053928899.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072924.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..677
                     /product="tRNA wybutosine-synthesizing protein 4 isoform
                     X3"
                     /calculated_mol_wt=74627
     Region          <43..198
                     /region_name="LCM"
                     /note="Leucine carboxyl methyltransferase; pfam04072"
                     /db_xref="CDD:427692"
     Region          <345..610
                     /region_name="NanM"
                     /note="N-acetylneuraminic acid mutarotase [Cell
                     wall/membrane/envelope biogenesis]; COG3055"
                     /db_xref="CDD:442289"
     Region          525..574
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..677
                     /gene="LCMT2"
                     /coded_by="XM_054072924.1:17..2050"
                     /db_xref="GeneID:104056263"
ORIGIN      
        1 mgrerrsaqv qstggssavs kasaaargyi qdrflgllag pgrrraplvh rgyyirarav
       61 dhciqdflqk tqshprtqil slgagfdslf frlkdlgllr rtvvyevdfp svarrkaali
      121 rrteelsall gdiggeglga vagegyrllg vdlselshle kaleeagldr gvptvvlaev
      181 vltymetsrs daliqwaaer fsqvcfllye qmhpedpfgr vmqrhfrqln salrsletyp
      241 eredqerrfl qrgwsecsvv dmneffttct aeeeqrrvqa lepfdeyeew hlkcshyfvl
      301 aaskgmeppw tpllptltgs phhgptrvvg svpaaacasn pdslglrryg hrsvllkpdv
      361 vlttggfged dgqhcrvrtf hvlvkreggw raggvrqetp dtrwgerlyh talclsddvv
      421 llvggrtsps ssgvatvwlk vsgtsaewda aevtvepvdl pavaeppshr wrhsatqvtf
      481 qgenflflyg grsatepvlg dwcflripel sytvipvega vperrhshga caweggaviv
      541 gglgadekpl gslfllrelq rgfgwqpmet hpplvprysh tahvhdgkll lvggvwlrss
      601 svpgvtvvdl ttglcldyti dveplewplm lhnhssvllp dekellvlgg ggncfsfgth
      661 lnsepvlldl nsilttp
//
LOCUS       XP_053928913             458 aa            linear   VRT 09-MAR-2023
DEFINITION  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial
            [Cuculus canorus].
ACCESSION   XP_053928913
VERSION     XP_053928913.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072938.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..458
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..458
                     /product="succinate--CoA ligase [ADP-forming] subunit
                     beta, mitochondrial"
                     /calculated_mol_wt=49412
     Region          50..438
                     /region_name="SucC"
                     /note="Succinyl-CoA synthetase, beta subunit [Energy
                     production and conversion]; COG0045"
                     /db_xref="CDD:439815"
     CDS             1..458
                     /gene="SUCLA2"
                     /coded_by="XM_054072938.1:103..1479"
                     /db_xref="GeneID:104058221"
ORIGIN      
        1 maasiissrv vaglraaigt asakvlggsp gilnnhgfqv qqqqqrrlsl heylsmgllq
       61 eagiavphgl vartpdeayk iakeigskdl vvkaqvlagg rgkgtfeggl kggvkivfsp
      121 eeakdisskm igkklftkqt gekgricnqv ficerryprr eyyfaitmer sfqgpvligs
      181 sqggvniedv aaenpdaiik epidivegik keqavrlaqk mgfppnlvde aaenmiklyn
      241 lflkydatmi einpmvedas gvvmcmdaki nfdsnsayrq kkifdmqdwt qederdrdaa
      301 kadlnyigld gnigclvnga glamatmdii klhggtpanf ldvgggatvq qvteafklit
      361 sdkkvlailv nifggimrcd viaqgivmav kdldlkipiv vrlqgtrvdd akalitasgl
      421 kilacddlde aakmvvklse ivnlakqaqv dvkfqlpi
//
LOCUS       XP_053928924            1570 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-binding cassette sub-family C member 9 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053928924
VERSION     XP_053928924.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072949.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1570
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1570
                     /product="ATP-binding cassette sub-family C member 9
                     isoform X1"
                     /calculated_mol_wt=177383
     Region          223..1567
                     /region_name="MRP_assoc_pro"
                     /note="multi drug resistance-associated protein (MRP);
                     TIGR00957"
                     /db_xref="CDD:188098"
     CDS             1..1570
                     /gene="ABCC9"
                     /coded_by="XM_054072949.1:272..4984"
                     /db_xref="GeneID:104059110"
ORIGIN      
        1 mrlafcgndn asaynisagv lrnvcfvdal nlvphvfllf itfpilfigw gsqsskvqih
       61 hntwlhfpgh nlrwiltftl lfvhvceiae givsdtqmks rhlhlflpai mgfvaatvsi
      121 vyyhnietsn fpklllalfl ywimafitkt iklvrycqdg vpfsqlrfci tgilvilygl
      181 lmaveinvir vrryvffmnp qkvkppedlq dlgvrflqpf vnllskatyw wmntliisah
      241 kkpvdlkaig klpiamralt nyvclkeaye eqknkvanqp nrspsiwlam ysafgrpill
      301 sstfryladl lgfagplcis givqgfqntt shtnttekak dssnsylsse eflrnvyvla
      361 vllflalilq rtflqasyyv ttetginlrg allamiynki lrlstsnlsm gemtlgqinn
      421 lvaietnqlm wflflcpnlw ampvqiimgv illynllgvs alvgaavivl lapiqyfiat
      481 klaeaqkstl dysterlkkt neilkgikll klyawehifc tsveetrmke ltslktfalh
      541 tslsifmnaa ipiaavlatf vtyaytndkp lqpaqafasl slfhilvtpl fllstvvrfa
      601 vkaiisvqkl nefllsdeig ddswrggdss vayesckkht glhtkainrr qplryqlesy
      661 eqptrkltrp veiddvaikv tngyfswgsg latlsninir iptgqmtmiv gqvgcgkssl
      721 llailgemqt legrvhwskm pdrqmntegy fsvnetessf easrsrnrys vayaaqkpwl
      781 lnatveenii fgspfnkqry kavtdacslq pdidllpfgd qteigergin lsggqrqric
      841 varalyqnts ivflddpfsa ldihlsdhlm qegilkflqe dkrtlvlvth klqylphadw
      901 iiamkdgmvl regtlkdiqt ndielyehwk tlmnrqdqel ekdmeadqtt lerktlrram
      961 ypresksqle dedeeeeeee deddnmstvl rlrtkmpwkt cwryltsggf fllflmifsk
     1021 llkhsvivai dywlatwtsm dnskefrnad ddktyhvavf silsgagivl clitsltvew
     1081 mgltaaknlh hnllnkiilg pirffdttpl glilnrfsad tniidqhipp tlesltrstl
     1141 lclsaigmis yatpwflval vplgiafyfi qkyfrvaskd lqelddstql pllchfseta
     1201 eglttirafr hearfkqrml eltdtnniay lflsaanrwl evrtdylgac ivltaavtsi
     1261 teglnsgfvg lgllyaltit nylnwvvrnl adlevqmgav kkvhsflnme senydgyldp
     1321 sqvpkdwpqe geikienlcv ryennlkpvl khvkayikpg qkvgicgrtg sgksslslaf
     1381 frmvdifdgr ividgidisk lplqtlrsrl siilqdpilf sgsirfnldp eckctddrlw
     1441 ealeiaqlkn mvkslpggld amvteggenf svgqrqlfcl arafvrkssi limdeatasi
     1501 dmatenilqk vvmtafadrt vvtiahrvht iltadlvivm krgnileydt penllsqedg
     1561 ifasfvradm
//
LOCUS       XP_053928931            1570 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-binding cassette sub-family C member 9 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053928931
VERSION     XP_053928931.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072956.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1570
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1570
                     /product="ATP-binding cassette sub-family C member 9
                     isoform X2"
                     /calculated_mol_wt=177230
     Region          223..1567
                     /region_name="MRP_assoc_pro"
                     /note="multi drug resistance-associated protein (MRP);
                     TIGR00957"
                     /db_xref="CDD:188098"
     CDS             1..1570
                     /gene="ABCC9"
                     /coded_by="XM_054072956.1:273..4985"
                     /db_xref="GeneID:104059110"
ORIGIN      
        1 mrlafcgndn asaynisagv lrnvcfvdal nlvphvfllf itfpilfigw gsqsskvqih
       61 hntwlhfpgh nlrwiltftl lfvhvceiae givsdtqmks rhlhlflpai mgfvaatvsi
      121 vyyhnietsn fpklllalfl ywimafitkt iklvrycqdg vpfsqlrfci tgilvilygl
      181 lmaveinvir vrryvffmnp qkvkppedlq dlgvrflqpf vnllskatyw wmntliisah
      241 kkpvdlkaig klpiamralt nyvclkeaye eqknkvanqp nrspsiwlam ysafgrpill
      301 sstfryladl lgfagplcis givqgfqntt shtnttekak dssnsylsse eflrnvyvla
      361 vllflalilq rtflqasyyv ttetginlrg allamiynki lrlstsnlsm gemtlgqinn
      421 lvaietnqlm wflflcpnlw ampvqiimgv illynllgvs alvgaavivl lapiqyfiat
      481 klaeaqkstl dysterlkkt neilkgikll klyawehifc tsveetrmke ltslktfalh
      541 tslsifmnaa ipiaavlatf vtyaytndkp lqpaqafasl slfhilvtpl fllstvvrfa
      601 vkaiisvqkl nefllsdeig ddswrggdss vayesckkht glhtkainrr qplryqlesy
      661 eqptrkltrp veiddvaikv tngyfswgsg latlsninir iptgqmtmiv gqvgcgkssl
      721 llailgemqt legrvhwskm pdrqmntegy fsvnetessf easrsrnrys vayaaqkpwl
      781 lnatveenii fgspfnkqry kavtdacslq pdidllpfgd qteigergin lsggqrqric
      841 varalyqnts ivflddpfsa ldihlsdhlm qegilkflqe dkrtlvlvth klqylphadw
      901 iiamkdgmvl regtlkdiqt ndielyehwk tlmnrqdqel ekdmeadqtt lerktlrram
      961 ypresksqle dedeeeeeee deddnmstvl rlrtkmpwkt cwryltsggf fllflmifsk
     1021 llkhsvivai dywlatwtsm dnskefrnad ddktyhvavf silsgagivl clitsltvew
     1081 mgltaaknlh hnllnkiilg pirffdttpl glilnrfsad tniidqhipp tlesltrstl
     1141 lclsaigmis yatpwflval vplgiafyfi qkyfrvaskd lqelddstql pllchfseta
     1201 eglttirafr hearfkqrml eltdtnniay lflsaanrwl evrtdylgac ivltaavtsi
     1261 teglnsgfvg lgllyaltit nylnwvvrnl adlevqmgav kkvhsflnme senydgyldp
     1321 sqvpkdwpqe geikienlcv ryennlkpvl khvkayikpg qkvgicgrtg sgksslslaf
     1381 frmvdifdgr ividgidisk lplqtlrsrl siilqdpilf sgsirfnldp eckctddrlw
     1441 ealeiaqlkn mvkslpggld amvteggenf svgqrqlfcl arafvrkssi limdeatasi
     1501 dmatenilqk vvmtafadrt vvtiahrvsh ildanvvlvl segflvecdt asnlllkedg
     1561 lfttlvkthk
//
LOCUS       XP_053928932            1570 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-binding cassette sub-family C member 9 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053928932
VERSION     XP_053928932.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072957.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1570
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1570
                     /product="ATP-binding cassette sub-family C member 9
                     isoform X1"
                     /calculated_mol_wt=177383
     Region          223..1567
                     /region_name="MRP_assoc_pro"
                     /note="multi drug resistance-associated protein (MRP);
                     TIGR00957"
                     /db_xref="CDD:188098"
     CDS             1..1570
                     /gene="ABCC9"
                     /coded_by="XM_054072957.1:197..4909"
                     /db_xref="GeneID:104059110"
ORIGIN      
        1 mrlafcgndn asaynisagv lrnvcfvdal nlvphvfllf itfpilfigw gsqsskvqih
       61 hntwlhfpgh nlrwiltftl lfvhvceiae givsdtqmks rhlhlflpai mgfvaatvsi
      121 vyyhnietsn fpklllalfl ywimafitkt iklvrycqdg vpfsqlrfci tgilvilygl
      181 lmaveinvir vrryvffmnp qkvkppedlq dlgvrflqpf vnllskatyw wmntliisah
      241 kkpvdlkaig klpiamralt nyvclkeaye eqknkvanqp nrspsiwlam ysafgrpill
      301 sstfryladl lgfagplcis givqgfqntt shtnttekak dssnsylsse eflrnvyvla
      361 vllflalilq rtflqasyyv ttetginlrg allamiynki lrlstsnlsm gemtlgqinn
      421 lvaietnqlm wflflcpnlw ampvqiimgv illynllgvs alvgaavivl lapiqyfiat
      481 klaeaqkstl dysterlkkt neilkgikll klyawehifc tsveetrmke ltslktfalh
      541 tslsifmnaa ipiaavlatf vtyaytndkp lqpaqafasl slfhilvtpl fllstvvrfa
      601 vkaiisvqkl nefllsdeig ddswrggdss vayesckkht glhtkainrr qplryqlesy
      661 eqptrkltrp veiddvaikv tngyfswgsg latlsninir iptgqmtmiv gqvgcgkssl
      721 llailgemqt legrvhwskm pdrqmntegy fsvnetessf easrsrnrys vayaaqkpwl
      781 lnatveenii fgspfnkqry kavtdacslq pdidllpfgd qteigergin lsggqrqric
      841 varalyqnts ivflddpfsa ldihlsdhlm qegilkflqe dkrtlvlvth klqylphadw
      901 iiamkdgmvl regtlkdiqt ndielyehwk tlmnrqdqel ekdmeadqtt lerktlrram
      961 ypresksqle dedeeeeeee deddnmstvl rlrtkmpwkt cwryltsggf fllflmifsk
     1021 llkhsvivai dywlatwtsm dnskefrnad ddktyhvavf silsgagivl clitsltvew
     1081 mgltaaknlh hnllnkiilg pirffdttpl glilnrfsad tniidqhipp tlesltrstl
     1141 lclsaigmis yatpwflval vplgiafyfi qkyfrvaskd lqelddstql pllchfseta
     1201 eglttirafr hearfkqrml eltdtnniay lflsaanrwl evrtdylgac ivltaavtsi
     1261 teglnsgfvg lgllyaltit nylnwvvrnl adlevqmgav kkvhsflnme senydgyldp
     1321 sqvpkdwpqe geikienlcv ryennlkpvl khvkayikpg qkvgicgrtg sgksslslaf
     1381 frmvdifdgr ividgidisk lplqtlrsrl siilqdpilf sgsirfnldp eckctddrlw
     1441 ealeiaqlkn mvkslpggld amvteggenf svgqrqlfcl arafvrkssi limdeatasi
     1501 dmatenilqk vvmtafadrt vvtiahrvht iltadlvivm krgnileydt penllsqedg
     1561 ifasfvradm
//
LOCUS       XP_053928940            1569 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-binding cassette sub-family C member 9 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053928940
VERSION     XP_053928940.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072965.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1569
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1569
                     /product="ATP-binding cassette sub-family C member 9
                     isoform X3"
                     /calculated_mol_wt=177296
     Region          223..1566
                     /region_name="MRP_assoc_pro"
                     /note="multi drug resistance-associated protein (MRP);
                     TIGR00957"
                     /db_xref="CDD:188098"
     CDS             1..1569
                     /gene="ABCC9"
                     /coded_by="XM_054072965.1:272..4981"
                     /db_xref="GeneID:104059110"
ORIGIN      
        1 mrlafcgndn asaynisagv lrnvcfvdal nlvphvfllf itfpilfigw gsqsskvqih
       61 hntwlhfpgh nlrwiltftl lfvhvceiae givsdtqmks rhlhlflpai mgfvaatvsi
      121 vyyhnietsn fpklllalfl ywimafitkt iklvrycqdg vpfsqlrfci tgilvilygl
      181 lmaveinvir vrryvffmnp qkvkppedlq dlgvrflqpf vnllskatyw wmntliisah
      241 kkpvdlkaig klpiamralt nyvclkeaye eqknkvanqp nrspsiwlam ysafgrpill
      301 sstfryladl lgfagplcis givqgfqntt shtnttekak dssnsylsse eflrnvyvla
      361 vllflalilq rtflqasyyv ttetginlrg allamiynki lrlstsnlsm gemtlgqinn
      421 lvaietnqlm wflflcpnlw ampvqiimgv illynllgvs alvgaavivl lapiqyfiat
      481 klaeaqkstl dysterlkkt neilkgikll klyawehifc tsveetrmke ltslktfalh
      541 tslsifmnaa ipiaavlatf vtyaytndkp lqpaqafasl slfhilvtpl fllstvvrfa
      601 vkaiisvqkl nefllsdeig ddswrggdss vayesckkht glhtkainrr qplryqlesy
      661 eqptrkltrp veiddvaikv tngyfswgsg latlsninir iptgqmtmiv gqvgcgkssl
      721 llailgemqt legrvhwskm pdrqmntegy fsvnetessf easrrnrysv ayaaqkpwll
      781 natveeniif gspfnkqryk avtdacslqp didllpfgdq teigerginl sggqrqricv
      841 aralyqntsi vflddpfsal dihlsdhlmq egilkflqed krtlvlvthk lqylphadwi
      901 iamkdgmvlr egtlkdiqtn dielyehwkt lmnrqdqele kdmeadqttl erktlrramy
      961 presksqled edeeeeeeed eddnmstvlr lrtkmpwktc wryltsggff llflmifskl
     1021 lkhsvivaid ywlatwtsmd nskefrnadd dktyhvavfs ilsgagivlc litsltvewm
     1081 gltaaknlhh nllnkiilgp irffdttplg lilnrfsadt niidqhippt lesltrstll
     1141 clsaigmisy atpwflvalv plgiafyfiq kyfrvaskdl qelddstqlp llchfsetae
     1201 glttirafrh earfkqrmle ltdtnniayl flsaanrwle vrtdylgaci vltaavtsit
     1261 eglnsgfvgl gllyaltitn ylnwvvrnla dlevqmgavk kvhsflnmes enydgyldps
     1321 qvpkdwpqeg eikienlcvr yennlkpvlk hvkayikpgq kvgicgrtgs gksslslaff
     1381 rmvdifdgri vidgidiskl plqtlrsrls iilqdpilfs gsirfnldpe ckctddrlwe
     1441 aleiaqlknm vkslpgglda mvteggenfs vgqrqlfcla rafvrkssil imdeatasid
     1501 matenilqkv vmtafadrtv vtiahrvhti ltadlvivmk rgnileydtp enllsqedgi
     1561 fasfvradm
//
LOCUS       XP_053928950            1557 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-binding cassette sub-family C member 9 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053928950
VERSION     XP_053928950.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072975.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1557
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1557
                     /product="ATP-binding cassette sub-family C member 9
                     isoform X4"
                     /calculated_mol_wt=175811
     Region          223..1554
                     /region_name="MRP_assoc_pro"
                     /note="multi drug resistance-associated protein (MRP);
                     TIGR00957"
                     /db_xref="CDD:188098"
     CDS             1..1557
                     /gene="ABCC9"
                     /coded_by="XM_054072975.1:272..4945"
                     /db_xref="GeneID:104059110"
ORIGIN      
        1 mrlafcgndn asaynisagv lrnvcfvdal nlvphvfllf itfpilfigw gsqsskvqih
       61 hntwlhfpgh nlrwiltftl lfvhvceiae givsdtqmks rhlhlflpai mgfvaatvsi
      121 vyyhnietsn fpklllalfl ywimafitkt iklvrycqdg vpfsqlrfci tgilvilygl
      181 lmaveinvir vrryvffmnp qkvkppedlq dlgvrflqpf vnllskatyw wmntliisah
      241 kkpvdlkaig klpiamralt nyvclkeaye eqknkvanqp nrspsiwlam ysafgrpill
      301 sstfryladl lgfagplcis givqgfqntt shtnttekak dssnsylsse eflrnvyvla
      361 vllflalilq rtflqasyyv ttetginlrg allamiynki lrlstsnlsm gemtlgqinn
      421 lvaietnqlm wflflcpnlw ampvqiimgv illynllgvs alvgaavivl lapiqyfiat
      481 klaeaqkstl dysterlkkt neilkgikll klyawehifc tsveetrmke ltslktfalh
      541 tslsifmnaa ipiaavlatf vtyaytndkp lqpaqafasl slfhilvtpl fllstvvrfa
      601 vkaiisvqkl nefllsdeig ddswrggdss vayesckkht glhtkainrr qplryqlesy
      661 eqptrkltrp veiddvaikv tngyfswgsg latlsninir iptgqmtmiv gqvgcgkssl
      721 llailgemqt legrvhwsnv netessfeas rsrnrysvay aaqkpwllna tveeniifgs
      781 pfnkqrykav tdacslqpdi dllpfgdqte igerginlsg gqrqricvar alyqntsivf
      841 lddpfsaldi hlsdhlmqeg ilkflqedkr tlvlvthklq ylphadwiia mkdgmvlreg
      901 tlkdiqtndi elyehwktlm nrqdqelekd meadqttler ktlrramypr esksqleded
      961 eeeeeeeded dnmstvlrlr tkmpwktcwr yltsggffll flmifskllk hsvivaidyw
     1021 latwtsmdns kefrnadddk tyhvavfsil sgagivlcli tsltvewmgl taaknlhhnl
     1081 lnkiilgpir ffdttplgli lnrfsadtni idqhipptle sltrstllcl saigmisyat
     1141 pwflvalvpl giafyfiqky frvaskdlqe lddstqlpll chfsetaegl ttirafrhea
     1201 rfkqrmlelt dtnniaylfl saanrwlevr tdylgacivl taavtsiteg lnsgfvglgl
     1261 lyaltitnyl nwvvrnladl evqmgavkkv hsflnmesen ydgyldpsqv pkdwpqegei
     1321 kienlcvrye nnlkpvlkhv kayikpgqkv gicgrtgsgk sslslaffrm vdifdgrivi
     1381 dgidisklpl qtlrsrlsii lqdpilfsgs irfnldpeck ctddrlweal eiaqlknmvk
     1441 slpggldamv teggenfsvg qrqlfclara fvrkssilim deatasidma tenilqkvvm
     1501 tafadrtvvt iahrvhtilt adlvivmkrg nileydtpen llsqedgifa sfvradm
//
LOCUS       XP_053928959            1556 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-binding cassette sub-family C member 9 isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053928959
VERSION     XP_053928959.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072984.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1556
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1556
                     /product="ATP-binding cassette sub-family C member 9
                     isoform X5"
                     /calculated_mol_wt=175724
     Region          223..1553
                     /region_name="MRP_assoc_pro"
                     /note="multi drug resistance-associated protein (MRP);
                     TIGR00957"
                     /db_xref="CDD:188098"
     CDS             1..1556
                     /gene="ABCC9"
                     /coded_by="XM_054072984.1:272..4942"
                     /db_xref="GeneID:104059110"
ORIGIN      
        1 mrlafcgndn asaynisagv lrnvcfvdal nlvphvfllf itfpilfigw gsqsskvqih
       61 hntwlhfpgh nlrwiltftl lfvhvceiae givsdtqmks rhlhlflpai mgfvaatvsi
      121 vyyhnietsn fpklllalfl ywimafitkt iklvrycqdg vpfsqlrfci tgilvilygl
      181 lmaveinvir vrryvffmnp qkvkppedlq dlgvrflqpf vnllskatyw wmntliisah
      241 kkpvdlkaig klpiamralt nyvclkeaye eqknkvanqp nrspsiwlam ysafgrpill
      301 sstfryladl lgfagplcis givqgfqntt shtnttekak dssnsylsse eflrnvyvla
      361 vllflalilq rtflqasyyv ttetginlrg allamiynki lrlstsnlsm gemtlgqinn
      421 lvaietnqlm wflflcpnlw ampvqiimgv illynllgvs alvgaavivl lapiqyfiat
      481 klaeaqkstl dysterlkkt neilkgikll klyawehifc tsveetrmke ltslktfalh
      541 tslsifmnaa ipiaavlatf vtyaytndkp lqpaqafasl slfhilvtpl fllstvvrfa
      601 vkaiisvqkl nefllsdeig ddswrggdss vayesckkht glhtkainrr qplryqlesy
      661 eqptrkltrp veiddvaikv tngyfswgsg latlsninir iptgqmtmiv gqvgcgkssl
      721 llailgemqt legrvhwsnv netessfeas rrnrysvaya aqkpwllnat veeniifgsp
      781 fnkqrykavt dacslqpdid llpfgdqtei gerginlsgg qrqricvara lyqntsivfl
      841 ddpfsaldih lsdhlmqegi lkflqedkrt lvlvthklqy lphadwiiam kdgmvlregt
      901 lkdiqtndie lyehwktlmn rqdqelekdm eadqttlerk tlrramypre sksqledede
      961 eeeeeededd nmstvlrlrt kmpwktcwry ltsggffllf lmifskllkh svivaidywl
     1021 atwtsmdnsk efrnadddkt yhvavfsils gagivlclit sltvewmglt aaknlhhnll
     1081 nkiilgpirf fdttplglil nrfsadtnii dqhipptles ltrstllcls aigmisyatp
     1141 wflvalvplg iafyfiqkyf rvaskdlqel ddstqlpllc hfsetaeglt tirafrhear
     1201 fkqrmleltd tnniaylfls aanrwlevrt dylgacivlt aavtsitegl nsgfvglgll
     1261 yaltitnyln wvvrnladle vqmgavkkvh sflnmeseny dgyldpsqvp kdwpqegeik
     1321 ienlcvryen nlkpvlkhvk ayikpgqkvg icgrtgsgks slslaffrmv difdgrivid
     1381 gidisklplq tlrsrlsiil qdpilfsgsi rfnldpeckc tddrlweale iaqlknmvks
     1441 lpggldamvt eggenfsvgq rqlfclaraf vrkssilimd eatasidmat enilqkvvmt
     1501 afadrtvvti ahrvhtilta dlvivmkrgn ileydtpenl lsqedgifas fvradm
//
LOCUS       XP_053928967            1544 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-binding cassette sub-family C member 9 isoform X6 [Cuculus
            canorus].
ACCESSION   XP_053928967
VERSION     XP_053928967.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054072992.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1544
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1544
                     /product="ATP-binding cassette sub-family C member 9
                     isoform X6"
                     /calculated_mol_wt=174387
     Region          223..1541
                     /region_name="MRP_assoc_pro"
                     /note="multi drug resistance-associated protein (MRP);
                     TIGR00957"
                     /db_xref="CDD:188098"
     CDS             1..1544
                     /gene="ABCC9"
                     /coded_by="XM_054072992.1:272..4906"
                     /db_xref="GeneID:104059110"
ORIGIN      
        1 mrlafcgndn asaynisagv lrnvcfvdal nlvphvfllf itfpilfigw gsqsskvqih
       61 hntwlhfpgh nlrwiltftl lfvhvceiae givsdtqmks rhlhlflpai mgfvaatvsi
      121 vyyhnietsn fpklllalfl ywimafitkt iklvrycqdg vpfsqlrfci tgilvilygl
      181 lmaveinvir vrryvffmnp qkvkppedlq dlgvrflqpf vnllskatyw wmntliisah
      241 kkpvdlkaig klpiamralt nyvclkeaye eqknkvanqp nrspsiwlam ysafgrpill
      301 sstfryladl lgfagplcis givqgfqntt shtnttekak dssnsylsse eflrnvyvla
      361 vllflalilq rtflqasyyv ttetginlrg allamiynki lrlstsnlsm gemtlgqinn
      421 lvaietnqlm wflflcpnlw ampvqiimgv illynllgvs alvgaavivl lapiqyfiat
      481 klaeaqkstl dysterlkkt neilkgikll klyawehifc tsveetrmke ltslktfalh
      541 tslsifmnaa ipiaavlatf vtyaytndkp lqpaqafasl slfhilvtpl fllstvvrfa
      601 vkaiisvqkl nefllsdeig ddswrggdss vayesckkht glhtkainrr qplryqlesy
      661 eqptrkltrp veiddvaikv tngyfswgsg latlsninir iptgqmtmiv gqvgcgkssl
      721 llailgemqt legrvhwsnr nrysvayaaq kpwllnatve eniifgspfn kqrykavtda
      781 cslqpdidll pfgdqteige rginlsggqr qricvaraly qntsivfldd pfsaldihls
      841 dhlmqegilk flqedkrtlv lvthklqylp hadwiiamkd gmvlregtlk diqtndiely
      901 ehwktlmnrq dqelekdmea dqttlerktl rramypresk sqlededeee eeeededdnm
      961 stvlrlrtkm pwktcwrylt sggffllflm ifskllkhsv ivaidywlat wtsmdnskef
     1021 rnadddktyh vavfsilsga givlclitsl tvewmgltaa knlhhnllnk iilgpirffd
     1081 ttplglilnr fsadtniidq hipptleslt rstllclsai gmisyatpwf lvalvplgia
     1141 fyfiqkyfrv askdlqeldd stqlpllchf setaegltti rafrhearfk qrmleltdtn
     1201 niaylflsaa nrwlevrtdy lgacivltaa vtsiteglns gfvglgllya ltitnylnwv
     1261 vrnladlevq mgavkkvhsf lnmesenydg yldpsqvpkd wpqegeikie nlcvryennl
     1321 kpvlkhvkay ikpgqkvgic grtgsgkssl slaffrmvdi fdgrividgi disklplqtl
     1381 rsrlsiilqd pilfsgsirf nldpeckctd drlwealeia qlknmvkslp ggldamvteg
     1441 genfsvgqrq lfclarafvr kssilimdea tasidmaten ilqkvvmtaf adrtvvtiah
     1501 rvhtiltadl vivmkrgnil eydtpenlls qedgifasfv radm
//
LOCUS       XP_053928975            1543 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-binding cassette sub-family C member 9 isoform X7 [Cuculus
            canorus].
ACCESSION   XP_053928975
VERSION     XP_053928975.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073000.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1543
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1543
                     /product="ATP-binding cassette sub-family C member 9
                     isoform X7"
                     /calculated_mol_wt=174245
     Region          223..1540
                     /region_name="MRP_assoc_pro"
                     /note="multi drug resistance-associated protein (MRP);
                     TIGR00957"
                     /db_xref="CDD:188098"
     CDS             1..1543
                     /gene="ABCC9"
                     /coded_by="XM_054073000.1:272..4903"
                     /db_xref="GeneID:104059110"
ORIGIN      
        1 mrlafcgndn asaynisagv lrnvcfvdal nlvphvfllf itfpilfigw gsqsskvqih
       61 hntwlhfpgh nlrwiltftl lfvhvceiae givsdtqmks rhlhlflpai mgfvaatvsi
      121 vyyhnietsn fpklllalfl ywimafitkt iklvrycqdg vpfsqlrfci tgilvilygl
      181 lmaveinvir vrryvffmnp qkvkppedlq dlgvrflqpf vnllskatyw wmntliisah
      241 kkpvdlkaig klpiamralt nyvclkeaye eqknkvanqp nrspsiwlam ysafgrpill
      301 sstfryladl lgfagplcis givqgfqntt shtnttekak dssnsylsse eflrnvyvla
      361 vllflalilq rtflqasyyv ttetginlrg allamiynki lrlstsnlsm gemtlgqinn
      421 lvaietnqlm wflflcpnlw ampvqiimgv illynllgvs alvgaavivl lapiqyfiat
      481 klaeaqkstl dysterlkkt neilkgikll klyawehifc tsveetrmke ltslktfalh
      541 tslsifmnaa ipiaavlatf vtyaytndkp lqpaqafasl slfhilvtpl fllstvvrfa
      601 vkaiisvqkl nefllsdeig ddswrggdss vayesckkht glhtkainrr qplryqlesy
      661 eqptrkltrp veiddvaikv tngyfswgsg latlsninir iptgqmtmiv gqvgcgkssl
      721 llailgemqt legrvhwskn rysvayaaqk pwllnatvee niifgspfnk qrykavtdac
      781 slqpdidllp fgdqteiger ginlsggqrq ricvaralyq ntsivflddp fsaldihlsd
      841 hlmqegilkf lqedkrtlvl vthklqylph adwiiamkdg mvlregtlkd iqtndielye
      901 hwktlmnrqd qelekdmead qttlerktlr ramypresks qlededeeee eeededdnms
      961 tvlrlrtkmp wktcwrylts ggffllflmi fskllkhsvi vaidywlatw tsmdnskefr
     1021 nadddktyhv avfsilsgag ivlclitslt vewmgltaak nlhhnllnki ilgpirffdt
     1081 tplglilnrf sadtniidqh ipptlesltr stllclsaig misyatpwfl valvplgiaf
     1141 yfiqkyfrva skdlqeldds tqlpllchfs etaeglttir afrhearfkq rmleltdtnn
     1201 iaylflsaan rwlevrtdyl gacivltaav tsiteglnsg fvglgllyal titnylnwvv
     1261 rnladlevqm gavkkvhsfl nmesenydgy ldpsqvpkdw pqegeikien lcvryennlk
     1321 pvlkhvkayi kpgqkvgicg rtgsgkssls laffrmvdif dgrividgid isklplqtlr
     1381 srlsiilqdp ilfsgsirfn ldpeckctdd rlwealeiaq lknmvkslpg gldamvtegg
     1441 enfsvgqrql fclarafvrk ssilimdeat asidmateni lqkvvmtafa drtvvtiahr
     1501 vhtiltadlv ivmkrgnile ydtpenllsq edgifasfvr adm
//
LOCUS       XP_053928984            1505 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-binding cassette sub-family C member 9 isoform X8 [Cuculus
            canorus].
ACCESSION   XP_053928984
VERSION     XP_053928984.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073009.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1505
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1505
                     /product="ATP-binding cassette sub-family C member 9
                     isoform X8"
                     /calculated_mol_wt=170298
     Region          <305..1502
                     /region_name="MRP_assoc_pro"
                     /note="multi drug resistance-associated protein (MRP);
                     TIGR00957"
                     /db_xref="CDD:188098"
     CDS             1..1505
                     /gene="ABCC9"
                     /coded_by="XM_054073009.1:272..4789"
                     /db_xref="GeneID:104059110"
ORIGIN      
        1 mrlafcgndn asaynisagv lrnvcfvdal nlvphvfllf itfpilfigw gsqsskvqih
       61 hntwlhfpgh nlrwiltftl lfvhvceiae givsdtqmks rhlhlflpai mgfvaatvsi
      121 vyyhnietsn fpklllalfl ywimafitkt iklvrycqdg vpfsqlrfci tgilvilygl
      181 lmaveinvir vrryvffmnp qkvkppedlq dlgvrflqpf vnllskatyw wmntliisah
      241 kkpvdlkaig klpiamralt nyvclkeaye eqkakdssns ylsseeflrn vyvlavllfl
      301 alilqrtflq asyyvttetg inlrgallam iynkilrlst snlsmgemtl gqinnlvaie
      361 tnqlmwflfl cpnlwampvq iimgvillyn llgvsalvga avivllapiq yfiatklaea
      421 qkstldyste rlkktneilk gikllklyaw ehifctsvee trmkeltslk tfalhtslsi
      481 fmnaaipiaa vlatfvtyay tndkplqpaq afaslslfhi lvtplfllst vvrfavkaii
      541 svqklnefll sdeigddswr ggdssvayes ckkhtglhtk ainrrqplry qlesyeqptr
      601 kltrpveidd vaikvtngyf swgsglatls niniriptgq mtmivgqvgc gksslllail
      661 gemqtlegrv hwskmpdrqm ntegyfsvne tessfeasrs rnrysvayaa qkpwllnatv
      721 eeniifgspf nkqrykavtd acslqpdidl lpfgdqteig erginlsggq rqricvaral
      781 yqntsivfld dpfsaldihl sdhlmqegil kflqedkrtl vlvthklqyl phadwiiamk
      841 dgmvlregtl kdiqtndiel yehwktlmnr qdqelekdme adqttlerkt lrramypres
      901 ksqlededee eeeeededdn mstvlrlrtk mpwktcwryl tsggffllfl mifskllkhs
      961 vivaidywla twtsmdnske frnadddkty hvavfsilsg agivlclits ltvewmglta
     1021 aknlhhnlln kiilgpirff dttplgliln rfsadtniid qhipptlesl trstllclsa
     1081 igmisyatpw flvalvplgi afyfiqkyfr vaskdlqeld dstqlpllch fsetaegltt
     1141 irafrhearf kqrmleltdt nniaylflsa anrwlevrtd ylgacivlta avtsitegln
     1201 sgfvglglly altitnylnw vvrnladlev qmgavkkvhs flnmesenyd gyldpsqvpk
     1261 dwpqegeiki enlcvryenn lkpvlkhvka yikpgqkvgi cgrtgsgkss lslaffrmvd
     1321 ifdgrividg idisklplqt lrsrlsiilq dpilfsgsir fnldpeckct ddrlwealei
     1381 aqlknmvksl pggldamvte ggenfsvgqr qlfclarafv rkssilimde atasidmate
     1441 nilqkvvmta fadrtvvtia hrvhtiltad lvivmkrgni leydtpenll sqedgifasf
     1501 vradm
//
LOCUS       XP_053928992            1557 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-binding cassette sub-family C member 9 isoform X9 [Cuculus
            canorus].
ACCESSION   XP_053928992
VERSION     XP_053928992.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073017.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1557
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1557
                     /product="ATP-binding cassette sub-family C member 9
                     isoform X9"
                     /calculated_mol_wt=175658
     Region          223..1554
                     /region_name="MRP_assoc_pro"
                     /note="multi drug resistance-associated protein (MRP);
                     TIGR00957"
                     /db_xref="CDD:188098"
     CDS             1..1557
                     /gene="ABCC9"
                     /coded_by="XM_054073017.1:273..4946"
                     /db_xref="GeneID:104059110"
ORIGIN      
        1 mrlafcgndn asaynisagv lrnvcfvdal nlvphvfllf itfpilfigw gsqsskvqih
       61 hntwlhfpgh nlrwiltftl lfvhvceiae givsdtqmks rhlhlflpai mgfvaatvsi
      121 vyyhnietsn fpklllalfl ywimafitkt iklvrycqdg vpfsqlrfci tgilvilygl
      181 lmaveinvir vrryvffmnp qkvkppedlq dlgvrflqpf vnllskatyw wmntliisah
      241 kkpvdlkaig klpiamralt nyvclkeaye eqknkvanqp nrspsiwlam ysafgrpill
      301 sstfryladl lgfagplcis givqgfqntt shtnttekak dssnsylsse eflrnvyvla
      361 vllflalilq rtflqasyyv ttetginlrg allamiynki lrlstsnlsm gemtlgqinn
      421 lvaietnqlm wflflcpnlw ampvqiimgv illynllgvs alvgaavivl lapiqyfiat
      481 klaeaqkstl dysterlkkt neilkgikll klyawehifc tsveetrmke ltslktfalh
      541 tslsifmnaa ipiaavlatf vtyaytndkp lqpaqafasl slfhilvtpl fllstvvrfa
      601 vkaiisvqkl nefllsdeig ddswrggdss vayesckkht glhtkainrr qplryqlesy
      661 eqptrkltrp veiddvaikv tngyfswgsg latlsninir iptgqmtmiv gqvgcgkssl
      721 llailgemqt legrvhwsnv netessfeas rsrnrysvay aaqkpwllna tveeniifgs
      781 pfnkqrykav tdacslqpdi dllpfgdqte igerginlsg gqrqricvar alyqntsivf
      841 lddpfsaldi hlsdhlmqeg ilkflqedkr tlvlvthklq ylphadwiia mkdgmvlreg
      901 tlkdiqtndi elyehwktlm nrqdqelekd meadqttler ktlrramypr esksqleded
      961 eeeeeeeded dnmstvlrlr tkmpwktcwr yltsggffll flmifskllk hsvivaidyw
     1021 latwtsmdns kefrnadddk tyhvavfsil sgagivlcli tsltvewmgl taaknlhhnl
     1081 lnkiilgpir ffdttplgli lnrfsadtni idqhipptle sltrstllcl saigmisyat
     1141 pwflvalvpl giafyfiqky frvaskdlqe lddstqlpll chfsetaegl ttirafrhea
     1201 rfkqrmlelt dtnniaylfl saanrwlevr tdylgacivl taavtsiteg lnsgfvglgl
     1261 lyaltitnyl nwvvrnladl evqmgavkkv hsflnmesen ydgyldpsqv pkdwpqegei
     1321 kienlcvrye nnlkpvlkhv kayikpgqkv gicgrtgsgk sslslaffrm vdifdgrivi
     1381 dgidisklpl qtlrsrlsii lqdpilfsgs irfnldpeck ctddrlweal eiaqlknmvk
     1441 slpggldamv teggenfsvg qrqlfclara fvrkssilim deatasidma tenilqkvvm
     1501 tafadrtvvt iahrvshild anvvlvlseg flvecdtasn lllkedglft tlvkthk
//
LOCUS       XP_053929001            1544 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-binding cassette sub-family C member 9 isoform X10 [Cuculus
            canorus].
ACCESSION   XP_053929001
VERSION     XP_053929001.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073026.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1544
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1544
                     /product="ATP-binding cassette sub-family C member 9
                     isoform X10"
                     /calculated_mol_wt=174234
     Region          223..1541
                     /region_name="MRP_assoc_pro"
                     /note="multi drug resistance-associated protein (MRP);
                     TIGR00957"
                     /db_xref="CDD:188098"
     CDS             1..1544
                     /gene="ABCC9"
                     /coded_by="XM_054073026.1:273..4907"
                     /db_xref="GeneID:104059110"
ORIGIN      
        1 mrlafcgndn asaynisagv lrnvcfvdal nlvphvfllf itfpilfigw gsqsskvqih
       61 hntwlhfpgh nlrwiltftl lfvhvceiae givsdtqmks rhlhlflpai mgfvaatvsi
      121 vyyhnietsn fpklllalfl ywimafitkt iklvrycqdg vpfsqlrfci tgilvilygl
      181 lmaveinvir vrryvffmnp qkvkppedlq dlgvrflqpf vnllskatyw wmntliisah
      241 kkpvdlkaig klpiamralt nyvclkeaye eqknkvanqp nrspsiwlam ysafgrpill
      301 sstfryladl lgfagplcis givqgfqntt shtnttekak dssnsylsse eflrnvyvla
      361 vllflalilq rtflqasyyv ttetginlrg allamiynki lrlstsnlsm gemtlgqinn
      421 lvaietnqlm wflflcpnlw ampvqiimgv illynllgvs alvgaavivl lapiqyfiat
      481 klaeaqkstl dysterlkkt neilkgikll klyawehifc tsveetrmke ltslktfalh
      541 tslsifmnaa ipiaavlatf vtyaytndkp lqpaqafasl slfhilvtpl fllstvvrfa
      601 vkaiisvqkl nefllsdeig ddswrggdss vayesckkht glhtkainrr qplryqlesy
      661 eqptrkltrp veiddvaikv tngyfswgsg latlsninir iptgqmtmiv gqvgcgkssl
      721 llailgemqt legrvhwsnr nrysvayaaq kpwllnatve eniifgspfn kqrykavtda
      781 cslqpdidll pfgdqteige rginlsggqr qricvaraly qntsivfldd pfsaldihls
      841 dhlmqegilk flqedkrtlv lvthklqylp hadwiiamkd gmvlregtlk diqtndiely
      901 ehwktlmnrq dqelekdmea dqttlerktl rramypresk sqlededeee eeeededdnm
      961 stvlrlrtkm pwktcwrylt sggffllflm ifskllkhsv ivaidywlat wtsmdnskef
     1021 rnadddktyh vavfsilsga givlclitsl tvewmgltaa knlhhnllnk iilgpirffd
     1081 ttplglilnr fsadtniidq hipptleslt rstllclsai gmisyatpwf lvalvplgia
     1141 fyfiqkyfrv askdlqeldd stqlpllchf setaegltti rafrhearfk qrmleltdtn
     1201 niaylflsaa nrwlevrtdy lgacivltaa vtsiteglns gfvglgllya ltitnylnwv
     1261 vrnladlevq mgavkkvhsf lnmesenydg yldpsqvpkd wpqegeikie nlcvryennl
     1321 kpvlkhvkay ikpgqkvgic grtgsgkssl slaffrmvdi fdgrividgi disklplqtl
     1381 rsrlsiilqd pilfsgsirf nldpeckctd drlwealeia qlknmvkslp ggldamvteg
     1441 genfsvgqrq lfclarafvr kssilimdea tasidmaten ilqkvvmtaf adrtvvtiah
     1501 rvshildanv vlvlsegflv ecdtasnlll kedglfttlv kthk
//
LOCUS       XP_053929014             265 aa            linear   VRT 09-MAR-2023
DEFINITION  protein shisa-like-1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053929014
VERSION     XP_053929014.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073039.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..265
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..265
                     /product="protein shisa-like-1 isoform X1"
                     /calculated_mol_wt=30384
     CDS             1..265
                     /gene="SHISAL1"
                     /coded_by="XM_054073039.1:860..1657"
                     /db_xref="GeneID:104067409"
ORIGIN      
        1 mtscgqqsln vlmvllslll savlsahfrv cepytdykgr yhfgfhcprl sdnksyifcc
       61 hhnntvfkyc cnetefqtvm qmnltgnadg ymhnnysall gvwiygffvv illvldllyy
      121 ssmnydickf ylarwgiqgk wmtqgqsrwi npdqdpsqvq tqpqtqpqpq tsqtvhtlkg
      181 dalrpplmsf qstsacikrr myvrislvcd evpstsqhcl eyvaeklsag sdfltlmnlk
      241 filmclkmge vrsdfkeqls rkstk
//
LOCUS       XP_053929021             255 aa            linear   VRT 09-MAR-2023
DEFINITION  protein shisa-like-1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053929021
VERSION     XP_053929021.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073046.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..255
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..255
                     /product="protein shisa-like-1 isoform X2"
                     /calculated_mol_wt=29081
     CDS             1..255
                     /gene="SHISAL1"
                     /coded_by="XM_054073046.1:678..1445"
                     /db_xref="GeneID:104067409"
ORIGIN      
        1 mtscgqqsln vlmvllslll savlsahfrv cepytdykgr yhfgfhcprl sdnksyifcc
       61 hhnntvfkyc cnetefqtvm qmnltgnadg ymhnnysall gvwiygffvv illvldllyy
      121 ssmnydickf ylarwgiqgk wmtqgqsrwi npdqdpsqvq tqpqtqpqpq tsqtvhtlkg
      181 dalrpplmsf qstsaclvcd evpstsqhcl eyvaeklsag sdfltlmnlk filmclkmge
      241 vrsdfkeqls rkstk
//
LOCUS       XP_053929030             248 aa            linear   VRT 09-MAR-2023
DEFINITION  protein shisa-like-1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053929030
VERSION     XP_053929030.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073055.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..248
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..248
                     /product="protein shisa-like-1 isoform X3"
                     /calculated_mol_wt=28262
     CDS             1..248
                     /gene="SHISAL1"
                     /coded_by="XM_054073055.1:679..1425"
                     /db_xref="GeneID:104067409"
ORIGIN      
        1 mtscgqqsln vlmvllslll savlsahfrv cepytdykgr yhfgfhcprl sdnksyifcc
       61 hhnntvfkyc cnetefqtvm qmnltgnadg ymhnnysall gvwiygffvv illvldllyy
      121 ssmnydickf ylarwgiqgk wmtqgqsrwi npdqdpsqvq tqpqtqpqpq tsqtvhtlkg
      181 dalrpplmsf qstsaclvcd evpstsqhcl eyvaeklsag sdfltlmnla ciahlfylis
      241 niflrnly
//
LOCUS       XP_053929040             227 aa            linear   VRT 09-MAR-2023
DEFINITION  protein shisa-like-1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053929040
VERSION     XP_053929040.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073065.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..227
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..227
                     /product="protein shisa-like-1 isoform X4"
                     /calculated_mol_wt=26048
     CDS             1..227
                     /gene="SHISAL1"
                     /coded_by="XM_054073065.1:676..1359"
                     /db_xref="GeneID:104067409"
ORIGIN      
        1 mtscgqqsln vlmvllslll savlsahfrv cepytdykgr yhfgfhcprl sdnksyifcc
       61 hhnntvfkyc cnetefqtvm qmnltgnadg ymhnnysall gvwiygffvv illvldllyy
      121 ssmnydickf ylarwgiqgk wmtqgqsrwi npdqdpsqvq tqpqtqpqpq tsqtvhtlkg
      181 dalrpplmsf qstsacikrr myvrislvcd evpstsqhcl eyvaekl
//
LOCUS       XP_053929045             220 aa            linear   VRT 09-MAR-2023
DEFINITION  protein shisa-like-1 isoform X5 [Cuculus canorus].
ACCESSION   XP_053929045
VERSION     XP_053929045.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073070.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..220
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..220
                     /product="protein shisa-like-1 isoform X5"
                     /calculated_mol_wt=25135
     CDS             1..220
                     /gene="SHISAL1"
                     /coded_by="XM_054073070.1:674..1336"
                     /db_xref="GeneID:104067409"
ORIGIN      
        1 mtscgqqsln vlmvllslll savlsahfrv cepytdykgr yhfgfhcprl sdnksyifcc
       61 hhnntvfkyc cnetefqtvm qmnltgnadg ymhnnysall gvwiygffvv illvldllyy
      121 ssmnydickf ylarwgiqgk wmtqgqsrwi npdqdpsqvq tqpqtqpqpq tsqtvhtlkg
      181 dalrpplmsf qstsaclvcd evpstsqhcl eyvaeklnly
//
LOCUS       XP_053929052             217 aa            linear   VRT 09-MAR-2023
DEFINITION  protein shisa-like-1 isoform X6 [Cuculus canorus].
ACCESSION   XP_053929052
VERSION     XP_053929052.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073077.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..217
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..217
                     /product="protein shisa-like-1 isoform X6"
                     /calculated_mol_wt=24744
     CDS             1..217
                     /gene="SHISAL1"
                     /coded_by="XM_054073077.1:674..1327"
                     /db_xref="GeneID:104067409"
ORIGIN      
        1 mtscgqqsln vlmvllslll savlsahfrv cepytdykgr yhfgfhcprl sdnksyifcc
       61 hhnntvfkyc cnetefqtvm qmnltgnadg ymhnnysall gvwiygffvv illvldllyy
      121 ssmnydickf ylarwgiqgk wmtqgqsrwi npdqdpsqvq tqpqtqpqpq tsqtvhtlkg
      181 dalrpplmsf qstsaclvcd evpstsqhcl eyvaekl
//
LOCUS       XP_053929056             213 aa            linear   VRT 09-MAR-2023
DEFINITION  protein shisa-like-1 isoform X7 [Cuculus canorus].
ACCESSION   XP_053929056
VERSION     XP_053929056.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073081.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..213
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..213
                     /product="protein shisa-like-1 isoform X7"
                     /calculated_mol_wt=24528
     CDS             1..213
                     /gene="SHISAL1"
                     /coded_by="XM_054073081.1:673..1314"
                     /db_xref="GeneID:104067409"
ORIGIN      
        1 mtscgqqsln vlmvllslll savlsahfrv cepytdykgr yhfgfhcprl sdnksyifcc
       61 hhnntvfkyc cnetefqtvm qmnltgnadg ymhnnysall gvwiygffvv illvldllyy
      121 ssmnydickf ylarwgiqgk wmtqgqsrwi npdqdpsqvq tqpqtqpqpq tsqtvhtlkg
      181 dalrpplmsf qstsacikrr myvrislnav nwq
//
LOCUS       XP_053929062             210 aa            linear   VRT 09-MAR-2023
DEFINITION  protein shisa-like-1 isoform X8 [Cuculus canorus].
ACCESSION   XP_053929062
VERSION     XP_053929062.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073087.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..210
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..210
                     /product="protein shisa-like-1 isoform X8"
                     /calculated_mol_wt=24177
     CDS             1..210
                     /gene="SHISAL1"
                     /coded_by="XM_054073087.1:673..1305"
                     /db_xref="GeneID:104067409"
ORIGIN      
        1 mtscgqqsln vlmvllslll savlsahfrv cepytdykgr yhfgfhcprl sdnksyifcc
       61 hhnntvfkyc cnetefqtvm qmnltgnadg ymhnnysall gvwiygffvv illvldllyy
      121 ssmnydickf ylarwgiqgk wmtqgqsrwi npdqdpsqvq tqpqtqpqpq tsqtvhtlkg
      181 dalrpplmsf qstsacikrr myvrismeti
//
LOCUS       XP_053929071             209 aa            linear   VRT 09-MAR-2023
DEFINITION  protein shisa-like-1 isoform X9 [Cuculus canorus].
ACCESSION   XP_053929071
VERSION     XP_053929071.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073096.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..209
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..209
                     /product="protein shisa-like-1 isoform X9"
                     /calculated_mol_wt=24162
     CDS             1..209
                     /gene="SHISAL1"
                     /coded_by="XM_054073096.1:672..1301"
                     /db_xref="GeneID:104067409"
ORIGIN      
        1 mtscgqqsln vlmvllslll savlsahfrv cepytdykgr yhfgfhcprl sdnksyifcc
       61 hhnntvfkyc cnetefqtvm qmnltgnadg ymhnnysall gvwiygffvv illvldllyy
      121 ssmnydickf ylarwgiqgk wmtqgqsrwi npdqdpsqvq tqpqtqpqpq tsqtvhtlkg
      181 dalrpplmsf qstsacikrr myvrirnly
//
LOCUS       XP_053929076             206 aa            linear   VRT 09-MAR-2023
DEFINITION  protein shisa-like-1 isoform X10 [Cuculus canorus].
ACCESSION   XP_053929076
VERSION     XP_053929076.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073101.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..206
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..206
                     /product="protein shisa-like-1 isoform X10"
                     /calculated_mol_wt=23772
     CDS             1..206
                     /gene="SHISAL1"
                     /coded_by="XM_054073101.1:672..1292"
                     /db_xref="GeneID:104067409"
ORIGIN      
        1 mtscgqqsln vlmvllslll savlsahfrv cepytdykgr yhfgfhcprl sdnksyifcc
       61 hhnntvfkyc cnetefqtvm qmnltgnadg ymhnnysall gvwiygffvv illvldllyy
      121 ssmnydickf ylarwgiqgk wmtqgqsrwi npdqdpsqvq tqpqtqpqpq tsqtvhtlkg
      181 dalrpplmsf qstsacikrr myvrir
//
LOCUS       XP_053929083             206 aa            linear   VRT 09-MAR-2023
DEFINITION  protein shisa-like-1 isoform X10 [Cuculus canorus].
ACCESSION   XP_053929083
VERSION     XP_053929083.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073108.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..206
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..206
                     /product="protein shisa-like-1 isoform X10"
                     /calculated_mol_wt=23772
     CDS             1..206
                     /gene="SHISAL1"
                     /coded_by="XM_054073108.1:672..1292"
                     /db_xref="GeneID:104067409"
ORIGIN      
        1 mtscgqqsln vlmvllslll savlsahfrv cepytdykgr yhfgfhcprl sdnksyifcc
       61 hhnntvfkyc cnetefqtvm qmnltgnadg ymhnnysall gvwiygffvv illvldllyy
      121 ssmnydickf ylarwgiqgk wmtqgqsrwi npdqdpsqvq tqpqtqpqpq tsqtvhtlkg
      181 dalrpplmsf qstsacikrr myvrir
//
LOCUS       XP_053929091             195 aa            linear   VRT 09-MAR-2023
DEFINITION  protein shisa-like-1 isoform X11 [Cuculus canorus].
ACCESSION   XP_053929091
VERSION     XP_053929091.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073116.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..195
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..195
                     /product="protein shisa-like-1 isoform X11"
                     /calculated_mol_wt=22296
     CDS             1..195
                     /gene="SHISAL1"
                     /coded_by="XM_054073116.1:663..1250"
                     /db_xref="GeneID:104067409"
ORIGIN      
        1 mtscgqqsln vlmvllslll savlsahfrv cepytdykgr yhfgfhcprl sdnksyifcc
       61 hhnntvfkyc cnetefqtvm qmnltgnadg ymhnnysall gvwiygffvv illvldllyy
      121 ssmnydickf ylarwgiqgk wmtqgqsrwi npdqdpsqvq tqpqtqpqpq tsqtvhtlkg
      181 dalrpplmsf qstsa
//
LOCUS       XP_053929111             483 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein AEBP2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053929111
VERSION     XP_053929111.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073136.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..483
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..483
                     /product="zinc finger protein AEBP2 isoform X1"
                     /calculated_mol_wt=50907
     Region          240..258
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(244,246,248..249,252..253,257,275,277,281..282,
                     289..290,293,309,311,313,315..316,319..320,323)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          269..294
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          287..313
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          302..324
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..483
                     /gene="AEBP2"
                     /coded_by="XM_054073136.1:91..1542"
                     /db_xref="GeneID:104065615"
ORIGIN      
        1 maaarsdmae prgplpgepa aaeeeeaaaa vappgagssp ppsaetesll llngeaesms
       61 epspesasqa gdgededeee eeeeeeeeee eggeeeessl vgssstssgc csdetrslsp
      121 ggsseadake epkggpgggl grggsssssv ssgadegygt gtgggsscsa asggrrgsle
      181 mssdgeplsr mdsedsisst imdvdstiss grstpvmmng qgvpasstks iaynccwdhc
      241 hacfssspdl adhirsihvd gqrggvfvcl wkgckvyntp stsqswlqrh mlthsgdkpf
      301 kcvvggcnas fasqgglarh vpthfsqqns skvasqpkak eespskagmn krrklknkrr
      361 rslprphdff daqtldairh raicfnlsah ieslgkghsv vfhstviakr kedsgkikll
      421 lhwtpedilp dvwvneserh qlktkvvhls klpkdtalll dpniyrnssk ggtysgilkd
      481 hfc
//
LOCUS       XP_053929117             475 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein AEBP2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053929117
VERSION     XP_053929117.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073142.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..475
                     /product="zinc finger protein AEBP2 isoform X2"
                     /calculated_mol_wt=50250
     Region          240..258
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(244,246,248..249,252..253,257,275,277,281..282,
                     289..290,293,309,311,313,315..316,319..320,323)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          269..294
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          287..313
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          302..324
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..475
                     /gene="AEBP2"
                     /coded_by="XM_054073142.1:90..1517"
                     /db_xref="GeneID:104065615"
ORIGIN      
        1 maaarsdmae prgplpgepa aaeeeeaaaa vappgagssp ppsaetesll llngeaesms
       61 epspesasqa gdgededeee eeeeeeeeee eggeeeessl vgssstssgc csdetrslsp
      121 ggsseadake epkggpgggl grggsssssv ssgadegygt gtgggsscsa asggrrgsle
      181 mssdgeplsr mdsedsisst imdvdstiss grstpvmmng qgvpasstks iaynccwdhc
      241 hacfssspdl adhirsihvd gqrggvfvcl wkgckvyntp stsqswlqrh mlthsgdkpf
      301 kcvvggcnas fasqgglarh vpthfsqqns skvasqpkak eespskagmn krrklknkrr
      361 rslprphdff daqtldairh raicfnlsah ieslgkghsv vfhstviakr kedsgkikll
      421 lhwtpedilp dvwvneserh qlktkvvhls klpkdtalll dpniyrtmpq krlkr
//
LOCUS       XP_053929127             489 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium-coupled neutral amino acid symporter 1 [Cuculus canorus].
ACCESSION   XP_053929127
VERSION     XP_053929127.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073152.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..489
                     /product="sodium-coupled neutral amino acid symporter 1"
                     /calculated_mol_wt=54224
     Region          68..477
                     /region_name="SLC5-6-like_sbd"
                     /note="Solute carrier families 5 and 6-like; solute
                     binding domain; cl00456"
                     /db_xref="CDD:444915"
     CDS             1..489
                     /gene="SLC38A1"
                     /coded_by="XM_054073152.1:343..1812"
                     /db_xref="GeneID:104062413"
ORIGIN      
        1 mpfkaglelt elqnmtvped dnisndsndf tevengqins kfisdresrr sltnshlekk
       61 kcdeyipgtt slgmsvfnls naimgsgilg lafalantgi llfllllvsv tllsiysiyl
      121 llvcsketgc mvyeklgeqv fgapgkmivf gstslqnvga mlsylfivkn elpsaikflm
      181 gkeetfsawy vdgrvlvvtv tfgiilplcl lknlgylgyt sgfslscmvf flivviykkf
      241 qipcggleln ttssilsnss ahehmckpky vifnsktvya lptiafafvc hpsvlpiyse
      301 lkdrsqkkmq lvsnisffam fvmyfmtaif gyltfyddvq sdllhkyqsk ddililtvrl
      361 avivaviltv pvlfftvrss lfelarktkf dlcrhvlvtl vllviinllv ifiptmkdif
      421 gvvgvtsanm lifilpssly lkitqqdgsk ltqriwaslf lalgimfslv siplviydwv
      481 qsggsaegh
//
LOCUS       XP_053929140             924 aa            linear   VRT 09-MAR-2023
DEFINITION  FHF complex subunit HOOK interacting protein 1B [Cuculus canorus].
ACCESSION   XP_053929140
VERSION     XP_053929140.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073165.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..924
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..924
                     /product="FHF complex subunit HOOK interacting protein 1B"
                     /calculated_mol_wt=100483
     Region          92..415
                     /region_name="RAI16-like"
                     /note="Retinoic acid induced 16-like protein; pfam10257"
                     /db_xref="CDD:370927"
     Region          725..818
                     /region_name="DUF5917"
                     /note="Family of unknown function (DUF5917); pfam19314"
                     /db_xref="CDD:466037"
     Region          885..916
                     /region_name="KELAA"
                     /note="KELAA motif; pfam19311"
                     /db_xref="CDD:466035"
     CDS             1..924
                     /gene="FHIP1B"
                     /coded_by="XM_054073165.1:165..2939"
                     /db_xref="GeneID:104056133"
ORIGIN      
        1 mermswlsrl tpraaggqra prraslqspv tadpetclma fqnhwaqvlh ilerrgaapa
       61 pddlssvrnn tfqmlnllae drpradgtrg pilefvasen llerllswha qadfteerka
      121 eqlklyemli sqarqpllre kpvltpllrl lalcsrpasa plenslvlll nqlcvsvake
      181 ppilelffhs paeqgpanli ifsllipfih hegargqqar dalllimals agnravaqsi
      241 tdnsyfcpvl atglsalyss lprklevrgd dwhclrredw igvsslvlfm nslefcnavi
      301 qvahplvrkq lvdyvhdgfl vpvlgpalhk psleetiast aylelflrsv tapallhtfl
      361 rflllhrhdg rslldtlvar lgassrlcmv slslfrtllg lhcedvmlql vlryllpcsh
      421 lmlsqrravr dldiygrsaa kflsliprcc rpespaehhp drdarthapg spvpdaavaa
      481 pkpstpsrls lflrqatpea ptprspgtps gspcrrtapw eevaeldrny leylrdarra
      541 vdhcawacrv wsapydgedp geaalaapps palrtkkrgl paerereapg saavaaaepr
      601 dsalvngaha aarpeadvav kkvrrsggte pcaergeaan swesppaald slldellara
      661 paepggvtie aftaelrele arlangdaep ppepparddd ddgeaevprp tppravgppp
      721 gqpctgpfla allgklenlp hnslyvnfll tglvaqlaty pqpllrsfll ntnmvfqpsv
      781 ksllqvlgsv knkiesfaat qedfpallfk akkfliargk ldwaeasgtv palrrtetpg
      841 rsrkpslgel lllrrgpspp psagprsppr gaprapppaa aaaalrvrna vygavvfcef
      901 lkelaalaqa havtppflge pped
//
LOCUS       XP_053929149             924 aa            linear   VRT 09-MAR-2023
DEFINITION  FHF complex subunit HOOK interacting protein 1B [Cuculus canorus].
ACCESSION   XP_053929149
VERSION     XP_053929149.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073174.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..924
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..924
                     /product="FHF complex subunit HOOK interacting protein 1B"
                     /calculated_mol_wt=100483
     Region          92..415
                     /region_name="RAI16-like"
                     /note="Retinoic acid induced 16-like protein; pfam10257"
                     /db_xref="CDD:370927"
     Region          725..818
                     /region_name="DUF5917"
                     /note="Family of unknown function (DUF5917); pfam19314"
                     /db_xref="CDD:466037"
     Region          885..916
                     /region_name="KELAA"
                     /note="KELAA motif; pfam19311"
                     /db_xref="CDD:466035"
     CDS             1..924
                     /gene="FHIP1B"
                     /coded_by="XM_054073174.1:118..2892"
                     /db_xref="GeneID:104056133"
ORIGIN      
        1 mermswlsrl tpraaggqra prraslqspv tadpetclma fqnhwaqvlh ilerrgaapa
       61 pddlssvrnn tfqmlnllae drpradgtrg pilefvasen llerllswha qadfteerka
      121 eqlklyemli sqarqpllre kpvltpllrl lalcsrpasa plenslvlll nqlcvsvake
      181 ppilelffhs paeqgpanli ifsllipfih hegargqqar dalllimals agnravaqsi
      241 tdnsyfcpvl atglsalyss lprklevrgd dwhclrredw igvsslvlfm nslefcnavi
      301 qvahplvrkq lvdyvhdgfl vpvlgpalhk psleetiast aylelflrsv tapallhtfl
      361 rflllhrhdg rslldtlvar lgassrlcmv slslfrtllg lhcedvmlql vlryllpcsh
      421 lmlsqrravr dldiygrsaa kflsliprcc rpespaehhp drdarthapg spvpdaavaa
      481 pkpstpsrls lflrqatpea ptprspgtps gspcrrtapw eevaeldrny leylrdarra
      541 vdhcawacrv wsapydgedp geaalaapps palrtkkrgl paerereapg saavaaaepr
      601 dsalvngaha aarpeadvav kkvrrsggte pcaergeaan swesppaald slldellara
      661 paepggvtie aftaelrele arlangdaep ppepparddd ddgeaevprp tppravgppp
      721 gqpctgpfla allgklenlp hnslyvnfll tglvaqlaty pqpllrsfll ntnmvfqpsv
      781 ksllqvlgsv knkiesfaat qedfpallfk akkfliargk ldwaeasgtv palrrtetpg
      841 rsrkpslgel lllrrgpspp psagprsppr gaprapppaa aaaalrvrna vygavvfcef
      901 lkelaalaqa havtppflge pped
//
LOCUS       XP_053929155             924 aa            linear   VRT 09-MAR-2023
DEFINITION  FHF complex subunit HOOK interacting protein 1B [Cuculus canorus].
ACCESSION   XP_053929155
VERSION     XP_053929155.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073180.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..924
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..924
                     /product="FHF complex subunit HOOK interacting protein 1B"
                     /calculated_mol_wt=100483
     Region          92..415
                     /region_name="RAI16-like"
                     /note="Retinoic acid induced 16-like protein; pfam10257"
                     /db_xref="CDD:370927"
     Region          725..818
                     /region_name="DUF5917"
                     /note="Family of unknown function (DUF5917); pfam19314"
                     /db_xref="CDD:466037"
     Region          885..916
                     /region_name="KELAA"
                     /note="KELAA motif; pfam19311"
                     /db_xref="CDD:466035"
     CDS             1..924
                     /gene="FHIP1B"
                     /coded_by="XM_054073180.1:242..3016"
                     /db_xref="GeneID:104056133"
ORIGIN      
        1 mermswlsrl tpraaggqra prraslqspv tadpetclma fqnhwaqvlh ilerrgaapa
       61 pddlssvrnn tfqmlnllae drpradgtrg pilefvasen llerllswha qadfteerka
      121 eqlklyemli sqarqpllre kpvltpllrl lalcsrpasa plenslvlll nqlcvsvake
      181 ppilelffhs paeqgpanli ifsllipfih hegargqqar dalllimals agnravaqsi
      241 tdnsyfcpvl atglsalyss lprklevrgd dwhclrredw igvsslvlfm nslefcnavi
      301 qvahplvrkq lvdyvhdgfl vpvlgpalhk psleetiast aylelflrsv tapallhtfl
      361 rflllhrhdg rslldtlvar lgassrlcmv slslfrtllg lhcedvmlql vlryllpcsh
      421 lmlsqrravr dldiygrsaa kflsliprcc rpespaehhp drdarthapg spvpdaavaa
      481 pkpstpsrls lflrqatpea ptprspgtps gspcrrtapw eevaeldrny leylrdarra
      541 vdhcawacrv wsapydgedp geaalaapps palrtkkrgl paerereapg saavaaaepr
      601 dsalvngaha aarpeadvav kkvrrsggte pcaergeaan swesppaald slldellara
      661 paepggvtie aftaelrele arlangdaep ppepparddd ddgeaevprp tppravgppp
      721 gqpctgpfla allgklenlp hnslyvnfll tglvaqlaty pqpllrsfll ntnmvfqpsv
      781 ksllqvlgsv knkiesfaat qedfpallfk akkfliargk ldwaeasgtv palrrtetpg
      841 rsrkpslgel lllrrgpspp psagprsppr gaprapppaa aaaalrvrna vygavvfcef
      901 lkelaalaqa havtppflge pped
//
LOCUS       XP_053929162             924 aa            linear   VRT 09-MAR-2023
DEFINITION  FHF complex subunit HOOK interacting protein 1B [Cuculus canorus].
ACCESSION   XP_053929162
VERSION     XP_053929162.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073187.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..924
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..924
                     /product="FHF complex subunit HOOK interacting protein 1B"
                     /calculated_mol_wt=100483
     Region          92..415
                     /region_name="RAI16-like"
                     /note="Retinoic acid induced 16-like protein; pfam10257"
                     /db_xref="CDD:370927"
     Region          725..818
                     /region_name="DUF5917"
                     /note="Family of unknown function (DUF5917); pfam19314"
                     /db_xref="CDD:466037"
     Region          885..916
                     /region_name="KELAA"
                     /note="KELAA motif; pfam19311"
                     /db_xref="CDD:466035"
     CDS             1..924
                     /gene="FHIP1B"
                     /coded_by="XM_054073187.1:238..3012"
                     /db_xref="GeneID:104056133"
ORIGIN      
        1 mermswlsrl tpraaggqra prraslqspv tadpetclma fqnhwaqvlh ilerrgaapa
       61 pddlssvrnn tfqmlnllae drpradgtrg pilefvasen llerllswha qadfteerka
      121 eqlklyemli sqarqpllre kpvltpllrl lalcsrpasa plenslvlll nqlcvsvake
      181 ppilelffhs paeqgpanli ifsllipfih hegargqqar dalllimals agnravaqsi
      241 tdnsyfcpvl atglsalyss lprklevrgd dwhclrredw igvsslvlfm nslefcnavi
      301 qvahplvrkq lvdyvhdgfl vpvlgpalhk psleetiast aylelflrsv tapallhtfl
      361 rflllhrhdg rslldtlvar lgassrlcmv slslfrtllg lhcedvmlql vlryllpcsh
      421 lmlsqrravr dldiygrsaa kflsliprcc rpespaehhp drdarthapg spvpdaavaa
      481 pkpstpsrls lflrqatpea ptprspgtps gspcrrtapw eevaeldrny leylrdarra
      541 vdhcawacrv wsapydgedp geaalaapps palrtkkrgl paerereapg saavaaaepr
      601 dsalvngaha aarpeadvav kkvrrsggte pcaergeaan swesppaald slldellara
      661 paepggvtie aftaelrele arlangdaep ppepparddd ddgeaevprp tppravgppp
      721 gqpctgpfla allgklenlp hnslyvnfll tglvaqlaty pqpllrsfll ntnmvfqpsv
      781 ksllqvlgsv knkiesfaat qedfpallfk akkfliargk ldwaeasgtv palrrtetpg
      841 rsrkpslgel lllrrgpspp psagprsppr gaprapppaa aaaalrvrna vygavvfcef
      901 lkelaalaqa havtppflge pped
//
LOCUS       XP_053929170             924 aa            linear   VRT 09-MAR-2023
DEFINITION  FHF complex subunit HOOK interacting protein 1B [Cuculus canorus].
ACCESSION   XP_053929170
VERSION     XP_053929170.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073195.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..924
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..924
                     /product="FHF complex subunit HOOK interacting protein 1B"
                     /calculated_mol_wt=100483
     Region          92..415
                     /region_name="RAI16-like"
                     /note="Retinoic acid induced 16-like protein; pfam10257"
                     /db_xref="CDD:370927"
     Region          725..818
                     /region_name="DUF5917"
                     /note="Family of unknown function (DUF5917); pfam19314"
                     /db_xref="CDD:466037"
     Region          885..916
                     /region_name="KELAA"
                     /note="KELAA motif; pfam19311"
                     /db_xref="CDD:466035"
     CDS             1..924
                     /gene="FHIP1B"
                     /coded_by="XM_054073195.1:238..3012"
                     /db_xref="GeneID:104056133"
ORIGIN      
        1 mermswlsrl tpraaggqra prraslqspv tadpetclma fqnhwaqvlh ilerrgaapa
       61 pddlssvrnn tfqmlnllae drpradgtrg pilefvasen llerllswha qadfteerka
      121 eqlklyemli sqarqpllre kpvltpllrl lalcsrpasa plenslvlll nqlcvsvake
      181 ppilelffhs paeqgpanli ifsllipfih hegargqqar dalllimals agnravaqsi
      241 tdnsyfcpvl atglsalyss lprklevrgd dwhclrredw igvsslvlfm nslefcnavi
      301 qvahplvrkq lvdyvhdgfl vpvlgpalhk psleetiast aylelflrsv tapallhtfl
      361 rflllhrhdg rslldtlvar lgassrlcmv slslfrtllg lhcedvmlql vlryllpcsh
      421 lmlsqrravr dldiygrsaa kflsliprcc rpespaehhp drdarthapg spvpdaavaa
      481 pkpstpsrls lflrqatpea ptprspgtps gspcrrtapw eevaeldrny leylrdarra
      541 vdhcawacrv wsapydgedp geaalaapps palrtkkrgl paerereapg saavaaaepr
      601 dsalvngaha aarpeadvav kkvrrsggte pcaergeaan swesppaald slldellara
      661 paepggvtie aftaelrele arlangdaep ppepparddd ddgeaevprp tppravgppp
      721 gqpctgpfla allgklenlp hnslyvnfll tglvaqlaty pqpllrsfll ntnmvfqpsv
      781 ksllqvlgsv knkiesfaat qedfpallfk akkfliargk ldwaeasgtv palrrtetpg
      841 rsrkpslgel lllrrgpspp psagprsppr gaprapppaa aaaalrvrna vygavvfcef
      901 lkelaalaqa havtppflge pped
//
LOCUS       XP_053929182             158 aa            linear   VRT 09-MAR-2023
DEFINITION  40S ribosomal protein S11 [Cuculus canorus].
ACCESSION   XP_053929182
VERSION     XP_053929182.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073207.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..158
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..158
                     /product="40S ribosomal protein S11"
                     /calculated_mol_wt=18272
     Region          1..158
                     /region_name="PTZ00241"
                     /note="40S ribosomal protein S11; Provisional"
                     /db_xref="CDD:240326"
     CDS             1..158
                     /gene="RPS11"
                     /coded_by="XM_054073207.1:113..589"
                     /db_xref="GeneID:104056143"
ORIGIN      
        1 madtqteray qkqptifqnk krvllgeggk eklpryyrni glgfktpkea iegtyidkkc
       61 pftgnvsirg rilsgvvtkm kmqrtivirr dylhyirkyn rfekrhknms vhlspcfrdv
      121 qigdivtvge crplsktvrf nvlkvtkaag tkkqfqkf
//
LOCUS       XP_053929193             685 aa            linear   VRT 09-MAR-2023
DEFINITION  FAD-dependent oxidoreductase domain-containing protein 2 [Cuculus
            canorus].
ACCESSION   XP_053929193
VERSION     XP_053929193.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073218.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..685
                     /product="FAD-dependent oxidoreductase domain-containing
                     protein 2"
                     /calculated_mol_wt=77970
     Region          30..>244
                     /region_name="CzcO"
                     /note="Predicted flavoprotein CzcO associated with the
                     cation diffusion facilitator CzcD [Inorganic ion transport
                     and metabolism]; COG2072"
                     /db_xref="CDD:441675"
     CDS             1..685
                     /gene="FOXRED2"
                     /coded_by="XM_054073218.1:148..2205"
                     /db_xref="GeneID:104065854"
ORIGIN      
        1 mapavcgmll alavyasslc vagsaaflyh dyciigagps glqaayflqq agrdyvvfer
       61 shapgsffal yprhrklisi nkrytgksns efnlrhdwns llshdrrllf rryshdffpn
      121 adtmvryled fasllklqvq yntaivhvtl ekdeqawngh yflltdqdrq nykcssllva
      181 tgtwvpnvvn fpgseyvegy etvsinpedf agqtvlilgr gnsafetaen ilgvtnfihm
      241 vsrsrvrlsw athyvgdlra innglldtyq lksldglleg dledlaivkd kkgklhitlr
      301 fylenrnasa gidsitlpqd eldnfatrap ydrvirclgw kfdfsiynrs lrmmpgkgnt
      361 nkypqikpsy esrgtrglfv lgtashsvdf rksaggfihg fryttravhr llenrhhgvp
      421 wpstvypitq ltnsiikrvn easglyqmfs vladiillre natafeylee ypvgilaele
      481 iqtgrkapsg lfvvimeygk nfsgadkdvf yynravgeaq hawqsnflhp viyyykrlpt
      541 ehemrlrppd wplprpdavh hivedfltdw tapnahilpl rrflenclst dlrnffaesc
      601 flfaftrqkl ppfcqqgyir mqglvgsqgl rhhaveagll edftltdfls drlpdshqgs
      661 qdqllrdhti pvrplqhlin akdel
//
LOCUS       XP_053929202             158 aa            linear   VRT 09-MAR-2023
DEFINITION  thioredoxin, mitochondrial [Cuculus canorus].
ACCESSION   XP_053929202
VERSION     XP_053929202.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073227.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..158
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..158
                     /product="thioredoxin, mitochondrial"
                     /calculated_mol_wt=17393
     Region          <75..156
                     /region_name="CnoX"
                     /note="Chaperedoxin CnoX, contains thioredoxin-like and
                     TPR-like domains, YbbN/TrxSC family [Posttranslational
                     modification, protein turnover, chaperones]; COG3118"
                     /db_xref="CDD:442352"
     CDS             1..158
                     /gene="TXN2"
                     /coded_by="XM_054073227.1:83..559"
                     /db_xref="GeneID:104065852"
ORIGIN      
        1 maqrllvrql lsltprvqll qgqqtlpgpl vprappapyh rtigtsagcr stfnvqddrd
       61 fqdrvvnnpk pvvvdfharw cgpckilgpr lekmvakqdg kvlmakvdid dhtdlaveye
      121 vsavptvlam kngdvvdkfv gikdedqlea flkkligv
//
LOCUS       XP_009567154             393 aa            linear   VRT 09-MAR-2023
DEFINITION  calcium/calmodulin-dependent protein kinase type 1D isoform X1
            [Cuculus canorus].
ACCESSION   XP_009567154
VERSION     XP_009567154.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568859.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..393
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..393
                     /product="calcium/calmodulin-dependent protein kinase type
                     1D isoform X1"
                     /calculated_mol_wt=43524
     Region          12..312
                     /region_name="STKc_CaMKI_delta"
                     /note="Catalytic domain of the Serine/Threonine kinase,
                     Calcium/calmodulin-dependent protein kinase Type I delta;
                     cd14168"
                     /db_xref="CDD:271070"
     Site            order(29..33,37,50,52,82,98..101,105,107,143..144,146,
                     148..149,151,164..165,168,182..186,188)
                     /site_type="active"
                     /db_xref="CDD:271070"
     Site            order(29..32,37,50,52,82,98..101,105,148..149,151,
                     164..165)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:271070"
     Site            order(33,105,107,143..144,146,148,168,182..186,188)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:271070"
     Site            164..186
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:271070"
     CDS             1..393
                     /gene="CAMK1D"
                     /coded_by="XM_009568859.2:114..1295"
                     /db_xref="GeneID:104066274"
ORIGIN      
        1 marengdggg swkkqaedik kifefketlg tgafsevvla eerasgklfa vkcipkkalk
       61 gkessienei avlrkikhen ivalediyes pnhlylvmql vsggelfdri vekgfytekd
      121 astlirqvld avyylhrmgi vhrdlkpenl lyysqdeesk imisdfglsk megkgdvmst
      181 acgtpgyvap evlaqkpysk avdcwsigvi ayillcgypp fydendsklf eqilkaeyef
      241 dspywddise sakdfirnlm ekdpnkrytc eqaarhpwia gdtalsknih esvsaqirkn
      301 fakskwrqaf natavvrhmr rlhlgsslds asasvsstls lasplpdtat rkdcmspstl
      361 csfvssassg vsavggdrrp rpttvttvht gsk
//
LOCUS       XP_053929219             368 aa            linear   VRT 09-MAR-2023
DEFINITION  calcium/calmodulin-dependent protein kinase type 1D isoform X2
            [Cuculus canorus].
ACCESSION   XP_053929219
VERSION     XP_053929219.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073244.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..368
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..368
                     /product="calcium/calmodulin-dependent protein kinase type
                     1D isoform X2"
                     /calculated_mol_wt=41296
     Region          12..312
                     /region_name="STKc_CaMKI_delta"
                     /note="Catalytic domain of the Serine/Threonine kinase,
                     Calcium/calmodulin-dependent protein kinase Type I delta;
                     cd14168"
                     /db_xref="CDD:271070"
     Site            order(29..33,37,50,52,82,98..101,105,107,143..144,146,
                     148..149,151,164..165,168,182..186,188)
                     /site_type="active"
                     /db_xref="CDD:271070"
     Site            order(29..32,37,50,52,82,98..101,105,148..149,151,
                     164..165)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:271070"
     Site            order(33,105,107,143..144,146,148,168,182..186,188)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:271070"
     Site            164..186
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:271070"
     CDS             1..368
                     /gene="CAMK1D"
                     /coded_by="XM_054073244.1:117..1223"
                     /db_xref="GeneID:104066274"
ORIGIN      
        1 marengdggg swkkqaedik kifefketlg tgafsevvla eerasgklfa vkcipkkalk
       61 gkessienei avlrkikhen ivalediyes pnhlylvmql vsggelfdri vekgfytekd
      121 astlirqvld avyylhrmgi vhrdlkpenl lyysqdeesk imisdfglsk megkgdvmst
      181 acgtpgyvap evlaqkpysk avdcwsigvi ayillcgypp fydendsklf eqilkaeyef
      241 dspywddise sakdfirnlm ekdpnkrytc eqaarhpwia gdtalsknih esvsaqirkn
      301 fakskwrqaf natavvrhmr rlhlgsslds asasvsstls lasplpdtat rkdslivdfy
      361 lqshrghl
//
LOCUS       XP_053929227             364 aa            linear   VRT 09-MAR-2023
DEFINITION  calcium/calmodulin-dependent protein kinase type 1D isoform X3
            [Cuculus canorus].
ACCESSION   XP_053929227
VERSION     XP_053929227.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073252.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..364
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..364
                     /product="calcium/calmodulin-dependent protein kinase type
                     1D isoform X3"
                     /calculated_mol_wt=40329
     Region          2..249
                     /region_name="STKc_CaMKI"
                     /note="Catalytic domain of the Serine/Threonine kinase,
                     Calcium/calmodulin-dependent protein kinase Type I;
                     cd14083"
                     /db_xref="CDD:270985"
     Site            order(2..4,8,21,23,53,69..72,76,78,114..115,117,119..120,
                     122,135..136,139,153..157,159)
                     /site_type="active"
                     /db_xref="CDD:270985"
     Site            order(2..3,8,21,23,53,69..72,76,119..120,122,135..136)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270985"
     Site            order(4,76,78,114..115,117,119,139,153..157,159)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270985"
     Site            order(135..146,148..157)
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270985"
     CDS             1..364
                     /gene="CAMK1D"
                     /coded_by="XM_054073252.1:154..1248"
                     /db_xref="GeneID:104066274"
ORIGIN      
        1 mkgafsevvl aeerasgklf avkcipkkal kgkessiene iavlrkikhe nivalediye
       61 spnhlylvmq lvsggelfdr ivekgfytek dastlirqvl davyylhrmg ivhrdlkpen
      121 llyysqdees kimisdfgls kmegkgdvms tacgtpgyva pevlaqkpys kavdcwsigv
      181 iayillcgyp pfydendskl feqilkaeye fdspywddis esakdfirnl mekdpnkryt
      241 ceqaarhpwi agdtalskni hesvsaqirk nfakskwrqa fnatavvrhm rrlhlgssld
      301 sasasvsstl slasplpdta trkdcmspst lcsfvssass gvsavggdrr prpttvttvh
      361 tgsk
//
LOCUS       XP_053929236             353 aa            linear   VRT 09-MAR-2023
DEFINITION  calcium/calmodulin-dependent protein kinase type 1D isoform X4
            [Cuculus canorus].
ACCESSION   XP_053929236
VERSION     XP_053929236.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073261.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..353
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..353
                     /product="calcium/calmodulin-dependent protein kinase type
                     1D isoform X4"
                     /calculated_mol_wt=39529
     Region          12..312
                     /region_name="STKc_CaMKI_delta"
                     /note="Catalytic domain of the Serine/Threonine kinase,
                     Calcium/calmodulin-dependent protein kinase Type I delta;
                     cd14168"
                     /db_xref="CDD:271070"
     Site            order(29..33,37,50,52,82,98..101,105,107,143..144,146,
                     148..149,151,164..165,168,182..186,188)
                     /site_type="active"
                     /db_xref="CDD:271070"
     Site            order(29..32,37,50,52,82,98..101,105,148..149,151,
                     164..165)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:271070"
     Site            order(33,105,107,143..144,146,148,168,182..186,188)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:271070"
     Site            164..186
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:271070"
     CDS             1..353
                     /gene="CAMK1D"
                     /coded_by="XM_054073261.1:116..1177"
                     /db_xref="GeneID:104066274"
ORIGIN      
        1 marengdggg swkkqaedik kifefketlg tgafsevvla eerasgklfa vkcipkkalk
       61 gkessienei avlrkikhen ivalediyes pnhlylvmql vsggelfdri vekgfytekd
      121 astlirqvld avyylhrmgi vhrdlkpenl lyysqdeesk imisdfglsk megkgdvmst
      181 acgtpgyvap evlaqkpysk avdcwsigvi ayillcgypp fydendsklf eqilkaeyef
      241 dspywddise sakdfirnlm ekdpnkrytc eqaarhpwia gdtalsknih esvsaqirkn
      301 fakskwrqaf natavvrhmr rlhlgsslds asasvsstls lasplpdtat rkd
//
LOCUS       XP_053929247             751 aa            linear   VRT 09-MAR-2023
DEFINITION  semaphorin-3C [Cuculus canorus].
ACCESSION   XP_053929247
VERSION     XP_053929247.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073272.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..751
                     /product="semaphorin-3C"
                     /calculated_mol_wt=85257
     Region          45..514
                     /region_name="Sema_3C"
                     /note="The Sema domain, a protein interacting module, of
                     semaphorin 3C (Sema3C); cd11251"
                     /db_xref="CDD:200512"
     Site            order(102..105,163..164,168,189,191..192,199,209,212..213,
                     215,220,249,273..277,279,395,399,402)
                     /site_type="other"
                     /note="putative plexin binding site [polypeptide binding]"
                     /db_xref="CDD:200512"
     Site            order(250..251,253,256..258,292,295..296,298,300,304,
                     327..334,360..363,408,423)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:200512"
     Region          513..550
                     /region_name="PSI"
                     /note="domain found in Plexins, Semaphorins and Integrins;
                     smart00423"
                     /db_xref="CDD:214655"
     Region          574..664
                     /region_name="Ig_Sema3"
                     /note="Immunoglobulin (Ig)-like domain of class III
                     semaphorin Sema3; cd05871"
                     /db_xref="CDD:409455"
     Region          574..580
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409455"
     Region          585..593
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409455"
     Site            order(587,631)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:409455"
     Region          599..605
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409455"
     Region          607..610
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409455"
     Region          619..623
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409455"
     Region          626..633
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409455"
     Region          639..648
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409455"
     Region          651..664
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409455"
     CDS             1..751
                     /gene="SEMA3C"
                     /coded_by="XM_054073272.1:408..2663"
                     /db_xref="GeneID:104066034"
ORIGIN      
        1 maflalhali gifiyfssvk gssqpqarvf ltfnelqetk tseyhrishs pldyrillmd
       61 edqdriyvgs kdhilslnin nisqdplsif wpasankvee ckmagkdpth gcgnfvrviq
      121 synrthlyvc gsgafspvcv yvnrgrrsee qifkidskce sgkgrcsfnp nvntvsvmin
      181 eelfsgmyid fmgtdaaifr sltrrnavrt dqhnskwlse pifvdahvip dgtdpndaki
      241 yfffkerltd nsgstkqihs mvaricpndt ggqrslvnkw ttflkarlvc svmdedgtet
      301 yfdeledvfl letdnprttl vygifttsss ifkgsavcvy hlsdiqtvfn gpfahkegpn
      361 hqlipyqgri pyprpgtcpg gaftpnmrtt kefpddvvtf irnhplmfnp iypihkrpli
      421 irigadykyt kiavdrvnaa dgryhvlflg tdqgtvqkvv vlptnfsssg elileelevf
      481 ksnspvttmk isskkqqlyv ssdegitqvs lhrchiygsa cadcclardp ycawdgnscs
      541 rfyptgkrrs rrqdvrhgnp ltqcrgfnlk ayrnaaeivq ygvknnttfl ectpkspqas
      601 ikwllqkdnd rrkevklner iiateqglli rsvqdsdrgl yhciatensf kqtlakinfk
      661 vldsemvafm tdkwspwtwa ssvralqfhp kdfvgafshs emqminqyck dsrqqgqqre
      721 epqkmrgdys klkalinsrk srnrrnqlpg s
//
LOCUS       XP_053929257             751 aa            linear   VRT 09-MAR-2023
DEFINITION  semaphorin-3C [Cuculus canorus].
ACCESSION   XP_053929257
VERSION     XP_053929257.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073282.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..751
                     /product="semaphorin-3C"
                     /calculated_mol_wt=85257
     Region          45..514
                     /region_name="Sema_3C"
                     /note="The Sema domain, a protein interacting module, of
                     semaphorin 3C (Sema3C); cd11251"
                     /db_xref="CDD:200512"
     Site            order(102..105,163..164,168,189,191..192,199,209,212..213,
                     215,220,249,273..277,279,395,399,402)
                     /site_type="other"
                     /note="putative plexin binding site [polypeptide binding]"
                     /db_xref="CDD:200512"
     Site            order(250..251,253,256..258,292,295..296,298,300,304,
                     327..334,360..363,408,423)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:200512"
     Region          513..550
                     /region_name="PSI"
                     /note="domain found in Plexins, Semaphorins and Integrins;
                     smart00423"
                     /db_xref="CDD:214655"
     Region          574..664
                     /region_name="Ig_Sema3"
                     /note="Immunoglobulin (Ig)-like domain of class III
                     semaphorin Sema3; cd05871"
                     /db_xref="CDD:409455"
     Region          574..580
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409455"
     Region          585..593
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409455"
     Site            order(587,631)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:409455"
     Region          599..605
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409455"
     Region          607..610
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409455"
     Region          619..623
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409455"
     Region          626..633
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409455"
     Region          639..648
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409455"
     Region          651..664
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409455"
     CDS             1..751
                     /gene="SEMA3C"
                     /coded_by="XM_054073282.1:209..2464"
                     /db_xref="GeneID:104066034"
ORIGIN      
        1 maflalhali gifiyfssvk gssqpqarvf ltfnelqetk tseyhrishs pldyrillmd
       61 edqdriyvgs kdhilslnin nisqdplsif wpasankvee ckmagkdpth gcgnfvrviq
      121 synrthlyvc gsgafspvcv yvnrgrrsee qifkidskce sgkgrcsfnp nvntvsvmin
      181 eelfsgmyid fmgtdaaifr sltrrnavrt dqhnskwlse pifvdahvip dgtdpndaki
      241 yfffkerltd nsgstkqihs mvaricpndt ggqrslvnkw ttflkarlvc svmdedgtet
      301 yfdeledvfl letdnprttl vygifttsss ifkgsavcvy hlsdiqtvfn gpfahkegpn
      361 hqlipyqgri pyprpgtcpg gaftpnmrtt kefpddvvtf irnhplmfnp iypihkrpli
      421 irigadykyt kiavdrvnaa dgryhvlflg tdqgtvqkvv vlptnfsssg elileelevf
      481 ksnspvttmk isskkqqlyv ssdegitqvs lhrchiygsa cadcclardp ycawdgnscs
      541 rfyptgkrrs rrqdvrhgnp ltqcrgfnlk ayrnaaeivq ygvknnttfl ectpkspqas
      601 ikwllqkdnd rrkevklner iiateqglli rsvqdsdrgl yhciatensf kqtlakinfk
      661 vldsemvafm tdkwspwtwa ssvralqfhp kdfvgafshs emqminqyck dsrqqgqqre
      721 epqkmrgdys klkalinsrk srnrrnqlpg s
//
LOCUS       XP_009564275             593 aa            linear   VRT 09-MAR-2023
DEFINITION  arylsulfatase D isoform X1 [Cuculus canorus].
ACCESSION   XP_009564275
VERSION     XP_009564275.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565980.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564275.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..593
                     /product="arylsulfatase D isoform X1"
                     /calculated_mol_wt=66706
     Region          34..558
                     /region_name="ES"
                     /note="Estrone sulfatase; cd16159"
                     /db_xref="CDD:293778"
     Site            order(43..44,83,142,144,173,298,350..351,376..377)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:293778"
     Site            order(83,142,144,173,298,376..377)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:293778"
     CDS             1..593
                     /gene="LOC104063729"
                     /coded_by="XM_009565980.2:171..1952"
                     /db_xref="GeneID:104063729"
ORIGIN      
        1 miwqltsywa slvtslifvl llqppltqls iiaqpnlvll maddlgigdv scygndtirt
       61 pnidrlakeg vkltqhiaaa plctpsraaf ltgrypfrsg mdavnnyrvi fwnggsgglp
      121 snettfakil qqqgystgli gkwhqgvnce srndhchhpl nhgfdyfygm pftlisdcqp
      181 tetpemdraf rrklwlstqm ialvtltaal grltglisvh wktltclavf sllffvswfs
      241 sygfvrywnc immrnhevte qpmvtdrttf lilresisfi ernkhkpfll flsflhshtp
      301 litterflgr sshglygdnv eemdwmvgqv ldavdkeglk nttlvyftsd hggwlerqed
      361 krqlggwngi ykggkgmggw eggirvpgif rwpgvlpsgt vineptslmd iyptvvhlag
      421 gvlpqdrvid grnlmpllrg tvehsehefl fhycgthlha vrwhqkdgga iwkahyvtpl
      481 fdppgagacy gkgvcpcfge gvthhdppll fdlsrdpsea kpltadtepl fnivikkigr
      541 aveehrrtla pvpeqlslyn ivwkpwlqpc cgtfpfcwcd kearfldqek lpg
//
LOCUS       XP_053929273             593 aa            linear   VRT 09-MAR-2023
DEFINITION  arylsulfatase D isoform X1 [Cuculus canorus].
ACCESSION   XP_053929273
VERSION     XP_053929273.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073298.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..593
                     /product="arylsulfatase D isoform X1"
                     /calculated_mol_wt=66706
     Region          34..558
                     /region_name="ES"
                     /note="Estrone sulfatase; cd16159"
                     /db_xref="CDD:293778"
     Site            order(43..44,83,142,144,173,298,350..351,376..377)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:293778"
     Site            order(83,142,144,173,298,376..377)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:293778"
     CDS             1..593
                     /gene="LOC104063729"
                     /coded_by="XM_054073298.1:171..1952"
                     /db_xref="GeneID:104063729"
ORIGIN      
        1 miwqltsywa slvtslifvl llqppltqls iiaqpnlvll maddlgigdv scygndtirt
       61 pnidrlakeg vkltqhiaaa plctpsraaf ltgrypfrsg mdavnnyrvi fwnggsgglp
      121 snettfakil qqqgystgli gkwhqgvnce srndhchhpl nhgfdyfygm pftlisdcqp
      181 tetpemdraf rrklwlstqm ialvtltaal grltglisvh wktltclavf sllffvswfs
      241 sygfvrywnc immrnhevte qpmvtdrttf lilresisfi ernkhkpfll flsflhshtp
      301 litterflgr sshglygdnv eemdwmvgqv ldavdkeglk nttlvyftsd hggwlerqed
      361 krqlggwngi ykggkgmggw eggirvpgif rwpgvlpsgt vineptslmd iyptvvhlag
      421 gvlpqdrvid grnlmpllrg tvehsehefl fhycgthlha vrwhqkdgga iwkahyvtpl
      481 fdppgagacy gkgvcpcfge gvthhdppll fdlsrdpsea kpltadtepl fnivikkigr
      541 aveehrrtla pvpeqlslyn ivwkpwlqpc cgtfpfcwcd kearfldqek lpg
//
LOCUS       XP_053929276             593 aa            linear   VRT 09-MAR-2023
DEFINITION  arylsulfatase D isoform X1 [Cuculus canorus].
ACCESSION   XP_053929276
VERSION     XP_053929276.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073301.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..593
                     /product="arylsulfatase D isoform X1"
                     /calculated_mol_wt=66706
     Region          34..558
                     /region_name="ES"
                     /note="Estrone sulfatase; cd16159"
                     /db_xref="CDD:293778"
     Site            order(43..44,83,142,144,173,298,350..351,376..377)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:293778"
     Site            order(83,142,144,173,298,376..377)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:293778"
     CDS             1..593
                     /gene="LOC104063729"
                     /coded_by="XM_054073301.1:499..2280"
                     /db_xref="GeneID:104063729"
ORIGIN      
        1 miwqltsywa slvtslifvl llqppltqls iiaqpnlvll maddlgigdv scygndtirt
       61 pnidrlakeg vkltqhiaaa plctpsraaf ltgrypfrsg mdavnnyrvi fwnggsgglp
      121 snettfakil qqqgystgli gkwhqgvnce srndhchhpl nhgfdyfygm pftlisdcqp
      181 tetpemdraf rrklwlstqm ialvtltaal grltglisvh wktltclavf sllffvswfs
      241 sygfvrywnc immrnhevte qpmvtdrttf lilresisfi ernkhkpfll flsflhshtp
      301 litterflgr sshglygdnv eemdwmvgqv ldavdkeglk nttlvyftsd hggwlerqed
      361 krqlggwngi ykggkgmggw eggirvpgif rwpgvlpsgt vineptslmd iyptvvhlag
      421 gvlpqdrvid grnlmpllrg tvehsehefl fhycgthlha vrwhqkdgga iwkahyvtpl
      481 fdppgagacy gkgvcpcfge gvthhdppll fdlsrdpsea kpltadtepl fnivikkigr
      541 aveehrrtla pvpeqlslyn ivwkpwlqpc cgtfpfcwcd kearfldqek lpg
//
LOCUS       XP_053929285             593 aa            linear   VRT 09-MAR-2023
DEFINITION  arylsulfatase D isoform X1 [Cuculus canorus].
ACCESSION   XP_053929285
VERSION     XP_053929285.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073310.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..593
                     /product="arylsulfatase D isoform X1"
                     /calculated_mol_wt=66706
     Region          34..558
                     /region_name="ES"
                     /note="Estrone sulfatase; cd16159"
                     /db_xref="CDD:293778"
     Site            order(43..44,83,142,144,173,298,350..351,376..377)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:293778"
     Site            order(83,142,144,173,298,376..377)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:293778"
     CDS             1..593
                     /gene="LOC104063729"
                     /coded_by="XM_054073310.1:1110..2891"
                     /db_xref="GeneID:104063729"
ORIGIN      
        1 miwqltsywa slvtslifvl llqppltqls iiaqpnlvll maddlgigdv scygndtirt
       61 pnidrlakeg vkltqhiaaa plctpsraaf ltgrypfrsg mdavnnyrvi fwnggsgglp
      121 snettfakil qqqgystgli gkwhqgvnce srndhchhpl nhgfdyfygm pftlisdcqp
      181 tetpemdraf rrklwlstqm ialvtltaal grltglisvh wktltclavf sllffvswfs
      241 sygfvrywnc immrnhevte qpmvtdrttf lilresisfi ernkhkpfll flsflhshtp
      301 litterflgr sshglygdnv eemdwmvgqv ldavdkeglk nttlvyftsd hggwlerqed
      361 krqlggwngi ykggkgmggw eggirvpgif rwpgvlpsgt vineptslmd iyptvvhlag
      421 gvlpqdrvid grnlmpllrg tvehsehefl fhycgthlha vrwhqkdgga iwkahyvtpl
      481 fdppgagacy gkgvcpcfge gvthhdppll fdlsrdpsea kpltadtepl fnivikkigr
      541 aveehrrtla pvpeqlslyn ivwkpwlqpc cgtfpfcwcd kearfldqek lpg
//
LOCUS       XP_053929294             590 aa            linear   VRT 09-MAR-2023
DEFINITION  arylsulfatase D isoform X2 [Cuculus canorus].
ACCESSION   XP_053929294
VERSION     XP_053929294.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073319.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..590
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..590
                     /product="arylsulfatase D isoform X2"
                     /calculated_mol_wt=66277
     Region          34..558
                     /region_name="ES"
                     /note="Estrone sulfatase; cd16159"
                     /db_xref="CDD:293778"
     Site            order(43..44,83,142,144,173,298,350..351,376..377)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:293778"
     Site            order(83,142,144,173,298,376..377)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:293778"
     CDS             1..590
                     /gene="LOC104063729"
                     /coded_by="XM_054073319.1:170..1942"
                     /db_xref="GeneID:104063729"
ORIGIN      
        1 miwqltsywa slvtslifvl llqppltqls iiaqpnlvll maddlgigdv scygndtirt
       61 pnidrlakeg vkltqhiaaa plctpsraaf ltgrypfrsg mdavnnyrvi fwnggsgglp
      121 snettfakil qqqgystgli gkwhqgvnce srndhchhpl nhgfdyfygm pftlisdcqp
      181 tetpemdraf rrklwlstqm ialvtltaal grltglisvh wktltclavf sllffvswfs
      241 sygfvrywnc immrnhevte qpmvtdrttf lilresisfi ernkhkpfll flsflhshtp
      301 litterflgr sshglygdnv eemdwmvgqv ldavdkeglk nttlvyftsd hggwlerqed
      361 krqlggwngi ykggkgmggw eggirvpgif rwpgvlpsgt vineptslmd iyptvvhlag
      421 gvlpqdrvid grnlmpllrg tvehsehefl fhycgthlha vrwhqkdgga iwkahyvtpl
      481 fdppgagacy gkgvcpcfge gvthhdppll fdlsrdpsea kpltadtepl fnivikkigr
      541 aveehrrtla pvpeqlslyn ivwkpwlqpc cgtfpfcwcd kegdnklanl
//
LOCUS       XP_053929309             580 aa            linear   VRT 09-MAR-2023
DEFINITION  arylsulfatase D [Cuculus canorus].
ACCESSION   XP_053929309
VERSION     XP_053929309.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073334.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..580
                     /product="arylsulfatase D"
                     /calculated_mol_wt=64788
     Region          25..549
                     /region_name="ES"
                     /note="Estrone sulfatase; cd16159"
                     /db_xref="CDD:293778"
     Site            order(34..35,74,133,135,164,289,341..342,367..368)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:293778"
     Site            order(74,133,135,164,289,367..368)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:293778"
     CDS             1..580
                     /gene="LOC104063748"
                     /coded_by="XM_054073334.1:253..1995"
                     /db_xref="GeneID:104063748"
ORIGIN      
        1 mylltaltsc lfwnmfglsv amdskpnill fladdlgigd igcygnntir tpnidrlare
       61 gvkltqhiaa aplctpsraa fltgrypirs gmassnryra lqwnagsggl panettfarl
      121 lqqqgyttgl igkwhqgvnc esfndhchhp lshgfdyfyg mpftllsncq enkppeldva
      181 lqeklwlysq iiilavltlt agkltnlisi dwkiivcftl vgslffiswy ssygfvqywn
      241 cilmrnhdit eqpmklerta slmlreaisf ikrnrhgpfl lfvsflhvht plfttakfqg
      301 kshhslygdn veemdwmagk ildsldkegl tnrtftyfas dhgghleaqd gsaqlggwng
      361 iykggkgmgg weggirvpgv frwpgvlpag gvideptslm diyptvvhla ggilpqdrvi
      421 dgrnlmpllq gksqksehef lfhycgsylh avrwhqkdsg aiwkahyvtp lfhppgagac
      481 ygkgicpcfg egvthhdppl lfdlsrdpse akpltadtep lfnivikkig raveehrrtl
      541 apvpeqlsly nimwkpwlqp ccgtfpfcwc dkegdntqrl
//
LOCUS       XP_053929314             580 aa            linear   VRT 09-MAR-2023
DEFINITION  arylsulfatase D [Cuculus canorus].
ACCESSION   XP_053929314
VERSION     XP_053929314.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073339.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..580
                     /product="arylsulfatase D"
                     /calculated_mol_wt=64788
     Region          25..549
                     /region_name="ES"
                     /note="Estrone sulfatase; cd16159"
                     /db_xref="CDD:293778"
     Site            order(34..35,74,133,135,164,289,341..342,367..368)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:293778"
     Site            order(74,133,135,164,289,367..368)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:293778"
     CDS             1..580
                     /gene="LOC104063748"
                     /coded_by="XM_054073339.1:385..2127"
                     /db_xref="GeneID:104063748"
ORIGIN      
        1 mylltaltsc lfwnmfglsv amdskpnill fladdlgigd igcygnntir tpnidrlare
       61 gvkltqhiaa aplctpsraa fltgrypirs gmassnryra lqwnagsggl panettfarl
      121 lqqqgyttgl igkwhqgvnc esfndhchhp lshgfdyfyg mpftllsncq enkppeldva
      181 lqeklwlysq iiilavltlt agkltnlisi dwkiivcftl vgslffiswy ssygfvqywn
      241 cilmrnhdit eqpmklerta slmlreaisf ikrnrhgpfl lfvsflhvht plfttakfqg
      301 kshhslygdn veemdwmagk ildsldkegl tnrtftyfas dhgghleaqd gsaqlggwng
      361 iykggkgmgg weggirvpgv frwpgvlpag gvideptslm diyptvvhla ggilpqdrvi
      421 dgrnlmpllq gksqksehef lfhycgsylh avrwhqkdsg aiwkahyvtp lfhppgagac
      481 ygkgicpcfg egvthhdppl lfdlsrdpse akpltadtep lfnivikkig raveehrrtl
      541 apvpeqlsly nimwkpwlqp ccgtfpfcwc dkegdntqrl
//
LOCUS       XP_053929317             580 aa            linear   VRT 09-MAR-2023
DEFINITION  arylsulfatase D [Cuculus canorus].
ACCESSION   XP_053929317
VERSION     XP_053929317.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073342.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..580
                     /product="arylsulfatase D"
                     /calculated_mol_wt=64788
     Region          25..549
                     /region_name="ES"
                     /note="Estrone sulfatase; cd16159"
                     /db_xref="CDD:293778"
     Site            order(34..35,74,133,135,164,289,341..342,367..368)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:293778"
     Site            order(74,133,135,164,289,367..368)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:293778"
     CDS             1..580
                     /gene="LOC104063748"
                     /coded_by="XM_054073342.1:277..2019"
                     /db_xref="GeneID:104063748"
ORIGIN      
        1 mylltaltsc lfwnmfglsv amdskpnill fladdlgigd igcygnntir tpnidrlare
       61 gvkltqhiaa aplctpsraa fltgrypirs gmassnryra lqwnagsggl panettfarl
      121 lqqqgyttgl igkwhqgvnc esfndhchhp lshgfdyfyg mpftllsncq enkppeldva
      181 lqeklwlysq iiilavltlt agkltnlisi dwkiivcftl vgslffiswy ssygfvqywn
      241 cilmrnhdit eqpmklerta slmlreaisf ikrnrhgpfl lfvsflhvht plfttakfqg
      301 kshhslygdn veemdwmagk ildsldkegl tnrtftyfas dhgghleaqd gsaqlggwng
      361 iykggkgmgg weggirvpgv frwpgvlpag gvideptslm diyptvvhla ggilpqdrvi
      421 dgrnlmpllq gksqksehef lfhycgsylh avrwhqkdsg aiwkahyvtp lfhppgagac
      481 ygkgicpcfg egvthhdppl lfdlsrdpse akpltadtep lfnivikkig raveehrrtl
      541 apvpeqlsly nimwkpwlqp ccgtfpfcwc dkegdntqrl
//
LOCUS       XP_009568345             284 aa            linear   VRT 09-MAR-2023
DEFINITION  sulfotransferase 4A1 [Cuculus canorus].
ACCESSION   XP_009568345
VERSION     XP_009568345.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009570050.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..284
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..284
                     /product="sulfotransferase 4A1"
                     /calculated_mol_wt=33007
     Region          45..277
                     /region_name="Sulfotransfer_1"
                     /note="Sulfotransferase domain; pfam00685"
                     /db_xref="CDD:425820"
     CDS             1..284
                     /gene="SULT4A1"
                     /coded_by="XM_009570050.2:92..946"
                     /db_xref="GeneID:104067318"
ORIGIN      
        1 maeseaetps tpgefeskyf eyngvrlppf crgkmeeian fpvrdsdvwi vtypksgtgl
       61 lqevvylvsq gadpdeiglm nideqlpvle ypqpgldiik eltsprliks hlpyrflpsd
      121 lhngnskviy marnpkdlvv syyqfhrslr tmsyrgtfqe fcrrfmndkl gygswfehvq
      181 efwehhmdan vlflkyedmh kdlatmveql vrflgvsydk aqlesmvehc hqlidqccna
      241 ealpvgrgrv glwkdiftvs mnekfdlvyk qkmgkcdlmf dfyl
//
LOCUS       XP_053929347            1842 aa            linear   VRT 09-MAR-2023
DEFINITION  plexin-B2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053929347
VERSION     XP_053929347.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073372.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1842
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1842
                     /product="plexin-B2 isoform X1"
                     /calculated_mol_wt=208351
     Region          30..479
                     /region_name="Sema"
                     /note="The Sema domain, a protein interacting module, of
                     semaphorins and plexins; cl15693"
                     /db_xref="CDD:472829"
     Region          480..525
                     /region_name="PSI"
                     /note="Plexin repeat; pfam01437"
                     /db_xref="CDD:396154"
     Region          538..623
                     /region_name="TIG_plexin"
                     /note="TIG domain; pfam17960"
                     /db_xref="CDD:465588"
     Region          766..>808
                     /region_name="PSI"
                     /note="Plexin repeat; pfam01437"
                     /db_xref="CDD:396154"
     Region          815..906
                     /region_name="IPT_plexin_repeat1"
                     /note="First repeat of the IPT domain of Plexins and Cell
                     Surface Receptors (PCSR) . Plexins are involved in the
                     regulation of cell proliferation and of cellular adhesion
                     and repulsion receptors. In general, there are three
                     copies of the IPT domain present...; cd01180"
                     /db_xref="CDD:238585"
     Region          907..992
                     /region_name="IPT"
                     /note="Immunoglobulin-like fold, Plexins, Transcription
                     factors (IPT). IPTs are also known as Transcription factor
                     ImmunoGlobin (TIG) domains. They are present in
                     intracellular transcription factors, cell surface
                     receptors (such as plexins and scatter factor...; cl15674"
                     /db_xref="CDD:472823"
     Region          994..1097
                     /region_name="IPT"
                     /note="Immunoglobulin-like fold, Plexins, Transcription
                     factors (IPT). IPTs are also known as Transcription factor
                     ImmunoGlobin (TIG) domains. They are present in
                     intracellular transcription factors, cell surface
                     receptors (such as plexins and scatter factor...; cl15674"
                     /db_xref="CDD:472823"
     Region          1275..1841
                     /region_name="RasGAP_plexin_B2"
                     /note="Ras-GTPase Activating Domain of plexin-B2; cd12792"
                     /db_xref="CDD:213352"
     Site            order(1351,1391,1395..1399,1406,1682,1690..1691,
                     1694..1695,1721,1728,1730,1737..1738)
                     /site_type="other"
                     /note="putative Rap interface [polypeptide binding]"
                     /db_xref="CDD:213352"
     Region          1452..1562
                     /region_name="Plexin_RBD"
                     /note="Plexin cytoplasmic RhoGTPase-binding domain;
                     pfam20170"
                     /db_xref="CDD:466321"
     CDS             1..1842
                     /gene="PLXNB2"
                     /coded_by="XM_054073372.1:463..5991"
                     /db_xref="GeneID:104055281"
ORIGIN      
        1 myyiemalwm wtlsilscfg vtlsrneels fqsatelnhl tvdndtgiiy lgvvnalyql
       61 tenldvirsv etgpskdnkk ctppidenqc keavltdnyn kllllnkadn tivvcgslfk
      121 gicairdled isirkyyvds sgeksfvasn denvptvgli tslnndrvmf vgkgngpndn
      181 giiistrqly erdgkdifem ytdsaavksa yhssstqqfv avfedknyvy fifnqqekqp
      241 vnnrtliarl ckddahyysy femdlgckdg dgaydhchsa yittpgeela esmaqqrqtm
      301 dplsddkvll alfskvnkdn gslksamcvf slrhinekme knrndcytkk ntssfyklfa
      361 aenpcaahgl nasknfpcgs ehlpyllgsk ngviekpvlq kegmnltavt vavenghtva
      421 flgtsdgkil kvflssiate yssltvelnk pikndlvldr tqenlyvmtt dkvyrlpvqd
      481 chkysdcekc aqardpycgw cvregrctkk adcgmankes dwlwspsgmc vtiisadpln
      541 msrkapakve ltvsplptlt ksdnvlctfg ettheaqlke gviicdppdr ipptpkgqdh
      601 vsvplrltig ndiffashty pfydceeamn llenqpcysc asnrwncqwn wkrhiceess
      661 svpdvikqnm eeecpqflnp nppiipveyq ttvyfegrhl syyqdkkfvv gnrqfkfeap
      721 veshegkfsf vskefsysan etlqlnlsik tdkvkidskl tvtlyncsyg rsdcslclaa
      781 hpdykcvwce edgkpskciy eklchtpptd tcphpeitri epktgplngg illtimgsnl
      841 gikaedvkni tvaekecffk eefysvstri vcqvgpmnep mqgqievsin gklgksppev
      901 hftyqephps girpesgpqa ggttltitgt nlatgskkdv qvsvgsqpcn vtefgdeivc
      961 itgpnnkvea vevtmnyggt virvpglfsy senptvtkfl pvnsfssggr nitvtgtgfe
     1021 liqsfslvvy aerpeagktn lrrfvgklvt rlnettvifs sppiledpen ynittiilmd
     1081 hynlvvknes hsfayvadpt fenftdgikk qvnklinakg snlnkamtid eaqafvgdep
     1141 cniktltetd lyceppevqp qpkkrqkrdt innlpefivk fglrewilgr veydtrvsdi
     1201 plnlilplvl ipmiviiiis iicyrrksqq aereyekiks qlegleesvr drckkeftdl
     1261 miemedqtnd ineagipvld yktytdrvff lpskdgekdv mitgkldipe arrqtmeqal
     1321 nqfsnllnsk sflinfihtl enqrefsara kvyfaslltv alhgkleyyt dimrtlflel
     1381 meqyvvaknp klmlrrsetv vermlsnwms iclyqylkdn ageplyklfk aikhqvekgp
     1441 vdavlkkaky tlndtgllgd dveytqltvn vyvqdggtds ipvkvlncdt isqvkekiid
     1501 qvyrnlpcsq wpkaesvvle wrpgstaqil sdldltsqrd grwkrintlm hynvrdgatl
     1561 ilskmgisqq pednqqdvpg erhalleden kvwhlvrpid eidegkskrg svkekertka
     1621 iteiyltrll svkgtlqkfv ddffnsvlns nhvvppavky ffdfldeqae khdikdedti
     1681 hiwktnslpl rfwvnilknp hfifdvhvhe vvdaslsvia qtfmdactrt ehklsrdsps
     1741 nkllyakeis nykkmvedyy kgirqmvpvs dqdmnthlae israhtdsln tlvalhqlyq
     1801 ytnkyydeii naleedpaaq kmqlafrlqq iaaalenkvt dl
//
LOCUS       XP_053929354            1842 aa            linear   VRT 09-MAR-2023
DEFINITION  plexin-B2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053929354
VERSION     XP_053929354.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073379.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1842
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1842
                     /product="plexin-B2 isoform X1"
                     /calculated_mol_wt=208351
     Region          30..479
                     /region_name="Sema"
                     /note="The Sema domain, a protein interacting module, of
                     semaphorins and plexins; cl15693"
                     /db_xref="CDD:472829"
     Region          480..525
                     /region_name="PSI"
                     /note="Plexin repeat; pfam01437"
                     /db_xref="CDD:396154"
     Region          538..623
                     /region_name="TIG_plexin"
                     /note="TIG domain; pfam17960"
                     /db_xref="CDD:465588"
     Region          766..>808
                     /region_name="PSI"
                     /note="Plexin repeat; pfam01437"
                     /db_xref="CDD:396154"
     Region          815..906
                     /region_name="IPT_plexin_repeat1"
                     /note="First repeat of the IPT domain of Plexins and Cell
                     Surface Receptors (PCSR) . Plexins are involved in the
                     regulation of cell proliferation and of cellular adhesion
                     and repulsion receptors. In general, there are three
                     copies of the IPT domain present...; cd01180"
                     /db_xref="CDD:238585"
     Region          907..992
                     /region_name="IPT"
                     /note="Immunoglobulin-like fold, Plexins, Transcription
                     factors (IPT). IPTs are also known as Transcription factor
                     ImmunoGlobin (TIG) domains. They are present in
                     intracellular transcription factors, cell surface
                     receptors (such as plexins and scatter factor...; cl15674"
                     /db_xref="CDD:472823"
     Region          994..1097
                     /region_name="IPT"
                     /note="Immunoglobulin-like fold, Plexins, Transcription
                     factors (IPT). IPTs are also known as Transcription factor
                     ImmunoGlobin (TIG) domains. They are present in
                     intracellular transcription factors, cell surface
                     receptors (such as plexins and scatter factor...; cl15674"
                     /db_xref="CDD:472823"
     Region          1275..1841
                     /region_name="RasGAP_plexin_B2"
                     /note="Ras-GTPase Activating Domain of plexin-B2; cd12792"
                     /db_xref="CDD:213352"
     Site            order(1351,1391,1395..1399,1406,1682,1690..1691,
                     1694..1695,1721,1728,1730,1737..1738)
                     /site_type="other"
                     /note="putative Rap interface [polypeptide binding]"
                     /db_xref="CDD:213352"
     Region          1452..1562
                     /region_name="Plexin_RBD"
                     /note="Plexin cytoplasmic RhoGTPase-binding domain;
                     pfam20170"
                     /db_xref="CDD:466321"
     CDS             1..1842
                     /gene="PLXNB2"
                     /coded_by="XM_054073379.1:512..6040"
                     /db_xref="GeneID:104055281"
ORIGIN      
        1 myyiemalwm wtlsilscfg vtlsrneels fqsatelnhl tvdndtgiiy lgvvnalyql
       61 tenldvirsv etgpskdnkk ctppidenqc keavltdnyn kllllnkadn tivvcgslfk
      121 gicairdled isirkyyvds sgeksfvasn denvptvgli tslnndrvmf vgkgngpndn
      181 giiistrqly erdgkdifem ytdsaavksa yhssstqqfv avfedknyvy fifnqqekqp
      241 vnnrtliarl ckddahyysy femdlgckdg dgaydhchsa yittpgeela esmaqqrqtm
      301 dplsddkvll alfskvnkdn gslksamcvf slrhinekme knrndcytkk ntssfyklfa
      361 aenpcaahgl nasknfpcgs ehlpyllgsk ngviekpvlq kegmnltavt vavenghtva
      421 flgtsdgkil kvflssiate yssltvelnk pikndlvldr tqenlyvmtt dkvyrlpvqd
      481 chkysdcekc aqardpycgw cvregrctkk adcgmankes dwlwspsgmc vtiisadpln
      541 msrkapakve ltvsplptlt ksdnvlctfg ettheaqlke gviicdppdr ipptpkgqdh
      601 vsvplrltig ndiffashty pfydceeamn llenqpcysc asnrwncqwn wkrhiceess
      661 svpdvikqnm eeecpqflnp nppiipveyq ttvyfegrhl syyqdkkfvv gnrqfkfeap
      721 veshegkfsf vskefsysan etlqlnlsik tdkvkidskl tvtlyncsyg rsdcslclaa
      781 hpdykcvwce edgkpskciy eklchtpptd tcphpeitri epktgplngg illtimgsnl
      841 gikaedvkni tvaekecffk eefysvstri vcqvgpmnep mqgqievsin gklgksppev
      901 hftyqephps girpesgpqa ggttltitgt nlatgskkdv qvsvgsqpcn vtefgdeivc
      961 itgpnnkvea vevtmnyggt virvpglfsy senptvtkfl pvnsfssggr nitvtgtgfe
     1021 liqsfslvvy aerpeagktn lrrfvgklvt rlnettvifs sppiledpen ynittiilmd
     1081 hynlvvknes hsfayvadpt fenftdgikk qvnklinakg snlnkamtid eaqafvgdep
     1141 cniktltetd lyceppevqp qpkkrqkrdt innlpefivk fglrewilgr veydtrvsdi
     1201 plnlilplvl ipmiviiiis iicyrrksqq aereyekiks qlegleesvr drckkeftdl
     1261 miemedqtnd ineagipvld yktytdrvff lpskdgekdv mitgkldipe arrqtmeqal
     1321 nqfsnllnsk sflinfihtl enqrefsara kvyfaslltv alhgkleyyt dimrtlflel
     1381 meqyvvaknp klmlrrsetv vermlsnwms iclyqylkdn ageplyklfk aikhqvekgp
     1441 vdavlkkaky tlndtgllgd dveytqltvn vyvqdggtds ipvkvlncdt isqvkekiid
     1501 qvyrnlpcsq wpkaesvvle wrpgstaqil sdldltsqrd grwkrintlm hynvrdgatl
     1561 ilskmgisqq pednqqdvpg erhalleden kvwhlvrpid eidegkskrg svkekertka
     1621 iteiyltrll svkgtlqkfv ddffnsvlns nhvvppavky ffdfldeqae khdikdedti
     1681 hiwktnslpl rfwvnilknp hfifdvhvhe vvdaslsvia qtfmdactrt ehklsrdsps
     1741 nkllyakeis nykkmvedyy kgirqmvpvs dqdmnthlae israhtdsln tlvalhqlyq
     1801 ytnkyydeii naleedpaaq kmqlafrlqq iaaalenkvt dl
//
LOCUS       XP_053929361            1842 aa            linear   VRT 09-MAR-2023
DEFINITION  plexin-B2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053929361
VERSION     XP_053929361.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073386.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1842
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1842
                     /product="plexin-B2 isoform X1"
                     /calculated_mol_wt=208351
     Region          30..479
                     /region_name="Sema"
                     /note="The Sema domain, a protein interacting module, of
                     semaphorins and plexins; cl15693"
                     /db_xref="CDD:472829"
     Region          480..525
                     /region_name="PSI"
                     /note="Plexin repeat; pfam01437"
                     /db_xref="CDD:396154"
     Region          538..623
                     /region_name="TIG_plexin"
                     /note="TIG domain; pfam17960"
                     /db_xref="CDD:465588"
     Region          766..>808
                     /region_name="PSI"
                     /note="Plexin repeat; pfam01437"
                     /db_xref="CDD:396154"
     Region          815..906
                     /region_name="IPT_plexin_repeat1"
                     /note="First repeat of the IPT domain of Plexins and Cell
                     Surface Receptors (PCSR) . Plexins are involved in the
                     regulation of cell proliferation and of cellular adhesion
                     and repulsion receptors. In general, there are three
                     copies of the IPT domain present...; cd01180"
                     /db_xref="CDD:238585"
     Region          907..992
                     /region_name="IPT"
                     /note="Immunoglobulin-like fold, Plexins, Transcription
                     factors (IPT). IPTs are also known as Transcription factor
                     ImmunoGlobin (TIG) domains. They are present in
                     intracellular transcription factors, cell surface
                     receptors (such as plexins and scatter factor...; cl15674"
                     /db_xref="CDD:472823"
     Region          994..1097
                     /region_name="IPT"
                     /note="Immunoglobulin-like fold, Plexins, Transcription
                     factors (IPT). IPTs are also known as Transcription factor
                     ImmunoGlobin (TIG) domains. They are present in
                     intracellular transcription factors, cell surface
                     receptors (such as plexins and scatter factor...; cl15674"
                     /db_xref="CDD:472823"
     Region          1275..1841
                     /region_name="RasGAP_plexin_B2"
                     /note="Ras-GTPase Activating Domain of plexin-B2; cd12792"
                     /db_xref="CDD:213352"
     Site            order(1351,1391,1395..1399,1406,1682,1690..1691,
                     1694..1695,1721,1728,1730,1737..1738)
                     /site_type="other"
                     /note="putative Rap interface [polypeptide binding]"
                     /db_xref="CDD:213352"
     Region          1452..1562
                     /region_name="Plexin_RBD"
                     /note="Plexin cytoplasmic RhoGTPase-binding domain;
                     pfam20170"
                     /db_xref="CDD:466321"
     CDS             1..1842
                     /gene="PLXNB2"
                     /coded_by="XM_054073386.1:375..5903"
                     /db_xref="GeneID:104055281"
ORIGIN      
        1 myyiemalwm wtlsilscfg vtlsrneels fqsatelnhl tvdndtgiiy lgvvnalyql
       61 tenldvirsv etgpskdnkk ctppidenqc keavltdnyn kllllnkadn tivvcgslfk
      121 gicairdled isirkyyvds sgeksfvasn denvptvgli tslnndrvmf vgkgngpndn
      181 giiistrqly erdgkdifem ytdsaavksa yhssstqqfv avfedknyvy fifnqqekqp
      241 vnnrtliarl ckddahyysy femdlgckdg dgaydhchsa yittpgeela esmaqqrqtm
      301 dplsddkvll alfskvnkdn gslksamcvf slrhinekme knrndcytkk ntssfyklfa
      361 aenpcaahgl nasknfpcgs ehlpyllgsk ngviekpvlq kegmnltavt vavenghtva
      421 flgtsdgkil kvflssiate yssltvelnk pikndlvldr tqenlyvmtt dkvyrlpvqd
      481 chkysdcekc aqardpycgw cvregrctkk adcgmankes dwlwspsgmc vtiisadpln
      541 msrkapakve ltvsplptlt ksdnvlctfg ettheaqlke gviicdppdr ipptpkgqdh
      601 vsvplrltig ndiffashty pfydceeamn llenqpcysc asnrwncqwn wkrhiceess
      661 svpdvikqnm eeecpqflnp nppiipveyq ttvyfegrhl syyqdkkfvv gnrqfkfeap
      721 veshegkfsf vskefsysan etlqlnlsik tdkvkidskl tvtlyncsyg rsdcslclaa
      781 hpdykcvwce edgkpskciy eklchtpptd tcphpeitri epktgplngg illtimgsnl
      841 gikaedvkni tvaekecffk eefysvstri vcqvgpmnep mqgqievsin gklgksppev
      901 hftyqephps girpesgpqa ggttltitgt nlatgskkdv qvsvgsqpcn vtefgdeivc
      961 itgpnnkvea vevtmnyggt virvpglfsy senptvtkfl pvnsfssggr nitvtgtgfe
     1021 liqsfslvvy aerpeagktn lrrfvgklvt rlnettvifs sppiledpen ynittiilmd
     1081 hynlvvknes hsfayvadpt fenftdgikk qvnklinakg snlnkamtid eaqafvgdep
     1141 cniktltetd lyceppevqp qpkkrqkrdt innlpefivk fglrewilgr veydtrvsdi
     1201 plnlilplvl ipmiviiiis iicyrrksqq aereyekiks qlegleesvr drckkeftdl
     1261 miemedqtnd ineagipvld yktytdrvff lpskdgekdv mitgkldipe arrqtmeqal
     1321 nqfsnllnsk sflinfihtl enqrefsara kvyfaslltv alhgkleyyt dimrtlflel
     1381 meqyvvaknp klmlrrsetv vermlsnwms iclyqylkdn ageplyklfk aikhqvekgp
     1441 vdavlkkaky tlndtgllgd dveytqltvn vyvqdggtds ipvkvlncdt isqvkekiid
     1501 qvyrnlpcsq wpkaesvvle wrpgstaqil sdldltsqrd grwkrintlm hynvrdgatl
     1561 ilskmgisqq pednqqdvpg erhalleden kvwhlvrpid eidegkskrg svkekertka
     1621 iteiyltrll svkgtlqkfv ddffnsvlns nhvvppavky ffdfldeqae khdikdedti
     1681 hiwktnslpl rfwvnilknp hfifdvhvhe vvdaslsvia qtfmdactrt ehklsrdsps
     1741 nkllyakeis nykkmvedyy kgirqmvpvs dqdmnthlae israhtdsln tlvalhqlyq
     1801 ytnkyydeii naleedpaaq kmqlafrlqq iaaalenkvt dl
//
LOCUS       XP_053929369            1842 aa            linear   VRT 09-MAR-2023
DEFINITION  plexin-B2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053929369
VERSION     XP_053929369.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073394.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1842
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1842
                     /product="plexin-B2 isoform X1"
                     /calculated_mol_wt=208351
     Region          30..479
                     /region_name="Sema"
                     /note="The Sema domain, a protein interacting module, of
                     semaphorins and plexins; cl15693"
                     /db_xref="CDD:472829"
     Region          480..525
                     /region_name="PSI"
                     /note="Plexin repeat; pfam01437"
                     /db_xref="CDD:396154"
     Region          538..623
                     /region_name="TIG_plexin"
                     /note="TIG domain; pfam17960"
                     /db_xref="CDD:465588"
     Region          766..>808
                     /region_name="PSI"
                     /note="Plexin repeat; pfam01437"
                     /db_xref="CDD:396154"
     Region          815..906
                     /region_name="IPT_plexin_repeat1"
                     /note="First repeat of the IPT domain of Plexins and Cell
                     Surface Receptors (PCSR) . Plexins are involved in the
                     regulation of cell proliferation and of cellular adhesion
                     and repulsion receptors. In general, there are three
                     copies of the IPT domain present...; cd01180"
                     /db_xref="CDD:238585"
     Region          907..992
                     /region_name="IPT"
                     /note="Immunoglobulin-like fold, Plexins, Transcription
                     factors (IPT). IPTs are also known as Transcription factor
                     ImmunoGlobin (TIG) domains. They are present in
                     intracellular transcription factors, cell surface
                     receptors (such as plexins and scatter factor...; cl15674"
                     /db_xref="CDD:472823"
     Region          994..1097
                     /region_name="IPT"
                     /note="Immunoglobulin-like fold, Plexins, Transcription
                     factors (IPT). IPTs are also known as Transcription factor
                     ImmunoGlobin (TIG) domains. They are present in
                     intracellular transcription factors, cell surface
                     receptors (such as plexins and scatter factor...; cl15674"
                     /db_xref="CDD:472823"
     Region          1275..1841
                     /region_name="RasGAP_plexin_B2"
                     /note="Ras-GTPase Activating Domain of plexin-B2; cd12792"
                     /db_xref="CDD:213352"
     Site            order(1351,1391,1395..1399,1406,1682,1690..1691,
                     1694..1695,1721,1728,1730,1737..1738)
                     /site_type="other"
                     /note="putative Rap interface [polypeptide binding]"
                     /db_xref="CDD:213352"
     Region          1452..1562
                     /region_name="Plexin_RBD"
                     /note="Plexin cytoplasmic RhoGTPase-binding domain;
                     pfam20170"
                     /db_xref="CDD:466321"
     CDS             1..1842
                     /gene="PLXNB2"
                     /coded_by="XM_054073394.1:586..6114"
                     /db_xref="GeneID:104055281"
ORIGIN      
        1 myyiemalwm wtlsilscfg vtlsrneels fqsatelnhl tvdndtgiiy lgvvnalyql
       61 tenldvirsv etgpskdnkk ctppidenqc keavltdnyn kllllnkadn tivvcgslfk
      121 gicairdled isirkyyvds sgeksfvasn denvptvgli tslnndrvmf vgkgngpndn
      181 giiistrqly erdgkdifem ytdsaavksa yhssstqqfv avfedknyvy fifnqqekqp
      241 vnnrtliarl ckddahyysy femdlgckdg dgaydhchsa yittpgeela esmaqqrqtm
      301 dplsddkvll alfskvnkdn gslksamcvf slrhinekme knrndcytkk ntssfyklfa
      361 aenpcaahgl nasknfpcgs ehlpyllgsk ngviekpvlq kegmnltavt vavenghtva
      421 flgtsdgkil kvflssiate yssltvelnk pikndlvldr tqenlyvmtt dkvyrlpvqd
      481 chkysdcekc aqardpycgw cvregrctkk adcgmankes dwlwspsgmc vtiisadpln
      541 msrkapakve ltvsplptlt ksdnvlctfg ettheaqlke gviicdppdr ipptpkgqdh
      601 vsvplrltig ndiffashty pfydceeamn llenqpcysc asnrwncqwn wkrhiceess
      661 svpdvikqnm eeecpqflnp nppiipveyq ttvyfegrhl syyqdkkfvv gnrqfkfeap
      721 veshegkfsf vskefsysan etlqlnlsik tdkvkidskl tvtlyncsyg rsdcslclaa
      781 hpdykcvwce edgkpskciy eklchtpptd tcphpeitri epktgplngg illtimgsnl
      841 gikaedvkni tvaekecffk eefysvstri vcqvgpmnep mqgqievsin gklgksppev
      901 hftyqephps girpesgpqa ggttltitgt nlatgskkdv qvsvgsqpcn vtefgdeivc
      961 itgpnnkvea vevtmnyggt virvpglfsy senptvtkfl pvnsfssggr nitvtgtgfe
     1021 liqsfslvvy aerpeagktn lrrfvgklvt rlnettvifs sppiledpen ynittiilmd
     1081 hynlvvknes hsfayvadpt fenftdgikk qvnklinakg snlnkamtid eaqafvgdep
     1141 cniktltetd lyceppevqp qpkkrqkrdt innlpefivk fglrewilgr veydtrvsdi
     1201 plnlilplvl ipmiviiiis iicyrrksqq aereyekiks qlegleesvr drckkeftdl
     1261 miemedqtnd ineagipvld yktytdrvff lpskdgekdv mitgkldipe arrqtmeqal
     1321 nqfsnllnsk sflinfihtl enqrefsara kvyfaslltv alhgkleyyt dimrtlflel
     1381 meqyvvaknp klmlrrsetv vermlsnwms iclyqylkdn ageplyklfk aikhqvekgp
     1441 vdavlkkaky tlndtgllgd dveytqltvn vyvqdggtds ipvkvlncdt isqvkekiid
     1501 qvyrnlpcsq wpkaesvvle wrpgstaqil sdldltsqrd grwkrintlm hynvrdgatl
     1561 ilskmgisqq pednqqdvpg erhalleden kvwhlvrpid eidegkskrg svkekertka
     1621 iteiyltrll svkgtlqkfv ddffnsvlns nhvvppavky ffdfldeqae khdikdedti
     1681 hiwktnslpl rfwvnilknp hfifdvhvhe vvdaslsvia qtfmdactrt ehklsrdsps
     1741 nkllyakeis nykkmvedyy kgirqmvpvs dqdmnthlae israhtdsln tlvalhqlyq
     1801 ytnkyydeii naleedpaaq kmqlafrlqq iaaalenkvt dl
//
LOCUS       XP_053929378            1842 aa            linear   VRT 09-MAR-2023
DEFINITION  plexin-B2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053929378
VERSION     XP_053929378.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073403.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1842
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1842
                     /product="plexin-B2 isoform X1"
                     /calculated_mol_wt=208351
     Region          30..479
                     /region_name="Sema"
                     /note="The Sema domain, a protein interacting module, of
                     semaphorins and plexins; cl15693"
                     /db_xref="CDD:472829"
     Region          480..525
                     /region_name="PSI"
                     /note="Plexin repeat; pfam01437"
                     /db_xref="CDD:396154"
     Region          538..623
                     /region_name="TIG_plexin"
                     /note="TIG domain; pfam17960"
                     /db_xref="CDD:465588"
     Region          766..>808
                     /region_name="PSI"
                     /note="Plexin repeat; pfam01437"
                     /db_xref="CDD:396154"
     Region          815..906
                     /region_name="IPT_plexin_repeat1"
                     /note="First repeat of the IPT domain of Plexins and Cell
                     Surface Receptors (PCSR) . Plexins are involved in the
                     regulation of cell proliferation and of cellular adhesion
                     and repulsion receptors. In general, there are three
                     copies of the IPT domain present...; cd01180"
                     /db_xref="CDD:238585"
     Region          907..992
                     /region_name="IPT"
                     /note="Immunoglobulin-like fold, Plexins, Transcription
                     factors (IPT). IPTs are also known as Transcription factor
                     ImmunoGlobin (TIG) domains. They are present in
                     intracellular transcription factors, cell surface
                     receptors (such as plexins and scatter factor...; cl15674"
                     /db_xref="CDD:472823"
     Region          994..1097
                     /region_name="IPT"
                     /note="Immunoglobulin-like fold, Plexins, Transcription
                     factors (IPT). IPTs are also known as Transcription factor
                     ImmunoGlobin (TIG) domains. They are present in
                     intracellular transcription factors, cell surface
                     receptors (such as plexins and scatter factor...; cl15674"
                     /db_xref="CDD:472823"
     Region          1275..1841
                     /region_name="RasGAP_plexin_B2"
                     /note="Ras-GTPase Activating Domain of plexin-B2; cd12792"
                     /db_xref="CDD:213352"
     Site            order(1351,1391,1395..1399,1406,1682,1690..1691,
                     1694..1695,1721,1728,1730,1737..1738)
                     /site_type="other"
                     /note="putative Rap interface [polypeptide binding]"
                     /db_xref="CDD:213352"
     Region          1452..1562
                     /region_name="Plexin_RBD"
                     /note="Plexin cytoplasmic RhoGTPase-binding domain;
                     pfam20170"
                     /db_xref="CDD:466321"
     CDS             1..1842
                     /gene="PLXNB2"
                     /coded_by="XM_054073403.1:275..5803"
                     /db_xref="GeneID:104055281"
ORIGIN      
        1 myyiemalwm wtlsilscfg vtlsrneels fqsatelnhl tvdndtgiiy lgvvnalyql
       61 tenldvirsv etgpskdnkk ctppidenqc keavltdnyn kllllnkadn tivvcgslfk
      121 gicairdled isirkyyvds sgeksfvasn denvptvgli tslnndrvmf vgkgngpndn
      181 giiistrqly erdgkdifem ytdsaavksa yhssstqqfv avfedknyvy fifnqqekqp
      241 vnnrtliarl ckddahyysy femdlgckdg dgaydhchsa yittpgeela esmaqqrqtm
      301 dplsddkvll alfskvnkdn gslksamcvf slrhinekme knrndcytkk ntssfyklfa
      361 aenpcaahgl nasknfpcgs ehlpyllgsk ngviekpvlq kegmnltavt vavenghtva
      421 flgtsdgkil kvflssiate yssltvelnk pikndlvldr tqenlyvmtt dkvyrlpvqd
      481 chkysdcekc aqardpycgw cvregrctkk adcgmankes dwlwspsgmc vtiisadpln
      541 msrkapakve ltvsplptlt ksdnvlctfg ettheaqlke gviicdppdr ipptpkgqdh
      601 vsvplrltig ndiffashty pfydceeamn llenqpcysc asnrwncqwn wkrhiceess
      661 svpdvikqnm eeecpqflnp nppiipveyq ttvyfegrhl syyqdkkfvv gnrqfkfeap
      721 veshegkfsf vskefsysan etlqlnlsik tdkvkidskl tvtlyncsyg rsdcslclaa
      781 hpdykcvwce edgkpskciy eklchtpptd tcphpeitri epktgplngg illtimgsnl
      841 gikaedvkni tvaekecffk eefysvstri vcqvgpmnep mqgqievsin gklgksppev
      901 hftyqephps girpesgpqa ggttltitgt nlatgskkdv qvsvgsqpcn vtefgdeivc
      961 itgpnnkvea vevtmnyggt virvpglfsy senptvtkfl pvnsfssggr nitvtgtgfe
     1021 liqsfslvvy aerpeagktn lrrfvgklvt rlnettvifs sppiledpen ynittiilmd
     1081 hynlvvknes hsfayvadpt fenftdgikk qvnklinakg snlnkamtid eaqafvgdep
     1141 cniktltetd lyceppevqp qpkkrqkrdt innlpefivk fglrewilgr veydtrvsdi
     1201 plnlilplvl ipmiviiiis iicyrrksqq aereyekiks qlegleesvr drckkeftdl
     1261 miemedqtnd ineagipvld yktytdrvff lpskdgekdv mitgkldipe arrqtmeqal
     1321 nqfsnllnsk sflinfihtl enqrefsara kvyfaslltv alhgkleyyt dimrtlflel
     1381 meqyvvaknp klmlrrsetv vermlsnwms iclyqylkdn ageplyklfk aikhqvekgp
     1441 vdavlkkaky tlndtgllgd dveytqltvn vyvqdggtds ipvkvlncdt isqvkekiid
     1501 qvyrnlpcsq wpkaesvvle wrpgstaqil sdldltsqrd grwkrintlm hynvrdgatl
     1561 ilskmgisqq pednqqdvpg erhalleden kvwhlvrpid eidegkskrg svkekertka
     1621 iteiyltrll svkgtlqkfv ddffnsvlns nhvvppavky ffdfldeqae khdikdedti
     1681 hiwktnslpl rfwvnilknp hfifdvhvhe vvdaslsvia qtfmdactrt ehklsrdsps
     1741 nkllyakeis nykkmvedyy kgirqmvpvs dqdmnthlae israhtdsln tlvalhqlyq
     1801 ytnkyydeii naleedpaaq kmqlafrlqq iaaalenkvt dl
//
LOCUS       XP_053929388            1842 aa            linear   VRT 09-MAR-2023
DEFINITION  plexin-B2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053929388
VERSION     XP_053929388.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073413.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1842
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1842
                     /product="plexin-B2 isoform X1"
                     /calculated_mol_wt=208351
     Region          30..479
                     /region_name="Sema"
                     /note="The Sema domain, a protein interacting module, of
                     semaphorins and plexins; cl15693"
                     /db_xref="CDD:472829"
     Region          480..525
                     /region_name="PSI"
                     /note="Plexin repeat; pfam01437"
                     /db_xref="CDD:396154"
     Region          538..623
                     /region_name="TIG_plexin"
                     /note="TIG domain; pfam17960"
                     /db_xref="CDD:465588"
     Region          766..>808
                     /region_name="PSI"
                     /note="Plexin repeat; pfam01437"
                     /db_xref="CDD:396154"
     Region          815..906
                     /region_name="IPT_plexin_repeat1"
                     /note="First repeat of the IPT domain of Plexins and Cell
                     Surface Receptors (PCSR) . Plexins are involved in the
                     regulation of cell proliferation and of cellular adhesion
                     and repulsion receptors. In general, there are three
                     copies of the IPT domain present...; cd01180"
                     /db_xref="CDD:238585"
     Region          907..992
                     /region_name="IPT"
                     /note="Immunoglobulin-like fold, Plexins, Transcription
                     factors (IPT). IPTs are also known as Transcription factor
                     ImmunoGlobin (TIG) domains. They are present in
                     intracellular transcription factors, cell surface
                     receptors (such as plexins and scatter factor...; cl15674"
                     /db_xref="CDD:472823"
     Region          994..1097
                     /region_name="IPT"
                     /note="Immunoglobulin-like fold, Plexins, Transcription
                     factors (IPT). IPTs are also known as Transcription factor
                     ImmunoGlobin (TIG) domains. They are present in
                     intracellular transcription factors, cell surface
                     receptors (such as plexins and scatter factor...; cl15674"
                     /db_xref="CDD:472823"
     Region          1275..1841
                     /region_name="RasGAP_plexin_B2"
                     /note="Ras-GTPase Activating Domain of plexin-B2; cd12792"
                     /db_xref="CDD:213352"
     Site            order(1351,1391,1395..1399,1406,1682,1690..1691,
                     1694..1695,1721,1728,1730,1737..1738)
                     /site_type="other"
                     /note="putative Rap interface [polypeptide binding]"
                     /db_xref="CDD:213352"
     Region          1452..1562
                     /region_name="Plexin_RBD"
                     /note="Plexin cytoplasmic RhoGTPase-binding domain;
                     pfam20170"
                     /db_xref="CDD:466321"
     CDS             1..1842
                     /gene="PLXNB2"
                     /coded_by="XM_054073413.1:324..5852"
                     /db_xref="GeneID:104055281"
ORIGIN      
        1 myyiemalwm wtlsilscfg vtlsrneels fqsatelnhl tvdndtgiiy lgvvnalyql
       61 tenldvirsv etgpskdnkk ctppidenqc keavltdnyn kllllnkadn tivvcgslfk
      121 gicairdled isirkyyvds sgeksfvasn denvptvgli tslnndrvmf vgkgngpndn
      181 giiistrqly erdgkdifem ytdsaavksa yhssstqqfv avfedknyvy fifnqqekqp
      241 vnnrtliarl ckddahyysy femdlgckdg dgaydhchsa yittpgeela esmaqqrqtm
      301 dplsddkvll alfskvnkdn gslksamcvf slrhinekme knrndcytkk ntssfyklfa
      361 aenpcaahgl nasknfpcgs ehlpyllgsk ngviekpvlq kegmnltavt vavenghtva
      421 flgtsdgkil kvflssiate yssltvelnk pikndlvldr tqenlyvmtt dkvyrlpvqd
      481 chkysdcekc aqardpycgw cvregrctkk adcgmankes dwlwspsgmc vtiisadpln
      541 msrkapakve ltvsplptlt ksdnvlctfg ettheaqlke gviicdppdr ipptpkgqdh
      601 vsvplrltig ndiffashty pfydceeamn llenqpcysc asnrwncqwn wkrhiceess
      661 svpdvikqnm eeecpqflnp nppiipveyq ttvyfegrhl syyqdkkfvv gnrqfkfeap
      721 veshegkfsf vskefsysan etlqlnlsik tdkvkidskl tvtlyncsyg rsdcslclaa
      781 hpdykcvwce edgkpskciy eklchtpptd tcphpeitri epktgplngg illtimgsnl
      841 gikaedvkni tvaekecffk eefysvstri vcqvgpmnep mqgqievsin gklgksppev
      901 hftyqephps girpesgpqa ggttltitgt nlatgskkdv qvsvgsqpcn vtefgdeivc
      961 itgpnnkvea vevtmnyggt virvpglfsy senptvtkfl pvnsfssggr nitvtgtgfe
     1021 liqsfslvvy aerpeagktn lrrfvgklvt rlnettvifs sppiledpen ynittiilmd
     1081 hynlvvknes hsfayvadpt fenftdgikk qvnklinakg snlnkamtid eaqafvgdep
     1141 cniktltetd lyceppevqp qpkkrqkrdt innlpefivk fglrewilgr veydtrvsdi
     1201 plnlilplvl ipmiviiiis iicyrrksqq aereyekiks qlegleesvr drckkeftdl
     1261 miemedqtnd ineagipvld yktytdrvff lpskdgekdv mitgkldipe arrqtmeqal
     1321 nqfsnllnsk sflinfihtl enqrefsara kvyfaslltv alhgkleyyt dimrtlflel
     1381 meqyvvaknp klmlrrsetv vermlsnwms iclyqylkdn ageplyklfk aikhqvekgp
     1441 vdavlkkaky tlndtgllgd dveytqltvn vyvqdggtds ipvkvlncdt isqvkekiid
     1501 qvyrnlpcsq wpkaesvvle wrpgstaqil sdldltsqrd grwkrintlm hynvrdgatl
     1561 ilskmgisqq pednqqdvpg erhalleden kvwhlvrpid eidegkskrg svkekertka
     1621 iteiyltrll svkgtlqkfv ddffnsvlns nhvvppavky ffdfldeqae khdikdedti
     1681 hiwktnslpl rfwvnilknp hfifdvhvhe vvdaslsvia qtfmdactrt ehklsrdsps
     1741 nkllyakeis nykkmvedyy kgirqmvpvs dqdmnthlae israhtdsln tlvalhqlyq
     1801 ytnkyydeii naleedpaaq kmqlafrlqq iaaalenkvt dl
//
LOCUS       XP_053929395            1758 aa            linear   VRT 09-MAR-2023
DEFINITION  plexin-B2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053929395
VERSION     XP_053929395.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073420.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1758
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1758
                     /product="plexin-B2 isoform X2"
                     /calculated_mol_wt=198698
     Region          30..479
                     /region_name="Sema"
                     /note="The Sema domain, a protein interacting module, of
                     semaphorins and plexins; cl15693"
                     /db_xref="CDD:472829"
     Region          480..525
                     /region_name="PSI"
                     /note="Plexin repeat; pfam01437"
                     /db_xref="CDD:396154"
     Region          538..623
                     /region_name="TIG_plexin"
                     /note="TIG domain; pfam17960"
                     /db_xref="CDD:465588"
     Region          766..>808
                     /region_name="PSI"
                     /note="Plexin repeat; pfam01437"
                     /db_xref="CDD:396154"
     Region          815..906
                     /region_name="IPT_plexin_repeat1"
                     /note="First repeat of the IPT domain of Plexins and Cell
                     Surface Receptors (PCSR) . Plexins are involved in the
                     regulation of cell proliferation and of cellular adhesion
                     and repulsion receptors. In general, there are three
                     copies of the IPT domain present...; cd01180"
                     /db_xref="CDD:238585"
     Region          907..992
                     /region_name="IPT"
                     /note="Immunoglobulin-like fold, Plexins, Transcription
                     factors (IPT). IPTs are also known as Transcription factor
                     ImmunoGlobin (TIG) domains. They are present in
                     intracellular transcription factors, cell surface
                     receptors (such as plexins and scatter factor...; cl15674"
                     /db_xref="CDD:472823"
     Region          994..1097
                     /region_name="IPT"
                     /note="Immunoglobulin-like fold, Plexins, Transcription
                     factors (IPT). IPTs are also known as Transcription factor
                     ImmunoGlobin (TIG) domains. They are present in
                     intracellular transcription factors, cell surface
                     receptors (such as plexins and scatter factor...; cl15674"
                     /db_xref="CDD:472823"
     Region          1275..1758
                     /region_name="Plexin_cytopl"
                     /note="Plexin cytoplasmic RasGAP domain; pfam08337"
                     /db_xref="CDD:462434"
     CDS             1..1758
                     /gene="PLXNB2"
                     /coded_by="XM_054073420.1:465..5741"
                     /db_xref="GeneID:104055281"
ORIGIN      
        1 myyiemalwm wtlsilscfg vtlsrneels fqsatelnhl tvdndtgiiy lgvvnalyql
       61 tenldvirsv etgpskdnkk ctppidenqc keavltdnyn kllllnkadn tivvcgslfk
      121 gicairdled isirkyyvds sgeksfvasn denvptvgli tslnndrvmf vgkgngpndn
      181 giiistrqly erdgkdifem ytdsaavksa yhssstqqfv avfedknyvy fifnqqekqp
      241 vnnrtliarl ckddahyysy femdlgckdg dgaydhchsa yittpgeela esmaqqrqtm
      301 dplsddkvll alfskvnkdn gslksamcvf slrhinekme knrndcytkk ntssfyklfa
      361 aenpcaahgl nasknfpcgs ehlpyllgsk ngviekpvlq kegmnltavt vavenghtva
      421 flgtsdgkil kvflssiate yssltvelnk pikndlvldr tqenlyvmtt dkvyrlpvqd
      481 chkysdcekc aqardpycgw cvregrctkk adcgmankes dwlwspsgmc vtiisadpln
      541 msrkapakve ltvsplptlt ksdnvlctfg ettheaqlke gviicdppdr ipptpkgqdh
      601 vsvplrltig ndiffashty pfydceeamn llenqpcysc asnrwncqwn wkrhiceess
      661 svpdvikqnm eeecpqflnp nppiipveyq ttvyfegrhl syyqdkkfvv gnrqfkfeap
      721 veshegkfsf vskefsysan etlqlnlsik tdkvkidskl tvtlyncsyg rsdcslclaa
      781 hpdykcvwce edgkpskciy eklchtpptd tcphpeitri epktgplngg illtimgsnl
      841 gikaedvkni tvaekecffk eefysvstri vcqvgpmnep mqgqievsin gklgksppev
      901 hftyqephps girpesgpqa ggttltitgt nlatgskkdv qvsvgsqpcn vtefgdeivc
      961 itgpnnkvea vevtmnyggt virvpglfsy senptvtkfl pvnsfssggr nitvtgtgfe
     1021 liqsfslvvy aerpeagktn lrrfvgklvt rlnettvifs sppiledpen ynittiilmd
     1081 hynlvvknes hsfayvadpt fenftdgikk qvnklinakg snlnkamtid eaqafvgdep
     1141 cniktltetd lyceppevqp qpkkrqkrdt innlpefivk fglrewilgr veydtrvsdi
     1201 plnlilplvl ipmiviiiis iicyrrksqq aereyekiks qlegleesvr drckkeftdl
     1261 miemedqtnd ineagipvld yktytdrvff lpskdgekdv mitgkldipe arrqtmeqal
     1321 nqfsnllnsk sflinfihtl enqrefsara kvyfaslltv alhgkleyyt dimrtlflel
     1381 meqyvvaknp klmlrrsetv vermlsnwms iclyqylkdn ageplyklfk aikhqvekgp
     1441 vdavlkkaky tlndtgllgd dveytqltvn vyvqdggtds ipvkvlncdt isqvkekiid
     1501 qvyrnlpcsq wpkaesvvle wrpgstaqil sdldltsqrd grwkrintlm hynvrdgatl
     1561 ilskmgisqq pednqqdvpg erhalleden kvwhlvrpid eidegkskrg svkekertka
     1621 iteiyltrll svkgtlqkfv ddffnsvlns nhvvppavky ffdfldeqae khdikdedti
     1681 hiwktnslpl rfwvnilknp hfifdvhvhe vvdaslsvia qtfmdactrt ehklsrdsps
     1741 nkllyakeis nykkmvee
//
LOCUS       XP_053929403             368 aa            linear   VRT 09-MAR-2023
DEFINITION  protein AMN1 homolog isoform X1 [Cuculus canorus].
ACCESSION   XP_053929403
VERSION     XP_053929403.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073428.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..368
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..368
                     /product="protein AMN1 homolog isoform X1"
                     /calculated_mol_wt=40263
     Region          128..152
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          147..367
                     /region_name="AMN1"
                     /note="Antagonist of mitotic exit network protein 1;
                     cd09293"
                     /db_xref="CDD:187754"
     Region          173..196
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          197..226
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          227..252
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          253..278
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          279..305
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          306..331
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     CDS             1..368
                     /gene="AMN1"
                     /coded_by="XM_054073428.1:569..1675"
                     /db_xref="GeneID:104056351"
ORIGIN      
        1 mvwvrrdlka hrvptplpwv nqgaqspiqp glehlqgwgi hsfpgrplpa phqdtpsags
       61 gapcsdyisr rargrrrrrh lglagtaapp amsrlsgawd gagdqvqlll dlqsanfiqq
      121 lprclrcltk nlsryaadmk slppnikdkl iklmsmqgqi tdsnisevlh pavefldlrd
      181 cdisdkallq lcnckqlkki nlnswkekrl gitsegvial alscpylrea sfkrccgitd
      241 sgvlalalnc qflqivnlgs csgimdaslq algenckflh svdfsstlvt ddgvvalvsg
      301 tcsknlkeih meccvsltdv aveavltccp kihillfhgc plmtdrsrda leqlvlsnkm
      361 kqvtwtvy
//
LOCUS       XP_053929411             357 aa            linear   VRT 09-MAR-2023
DEFINITION  protein AMN1 homolog isoform X2 [Cuculus canorus].
ACCESSION   XP_053929411
VERSION     XP_053929411.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073436.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..357
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..357
                     /product="protein AMN1 homolog isoform X2"
                     /calculated_mol_wt=38980
     Region          136..356
                     /region_name="AMN1"
                     /note="Antagonist of mitotic exit network protein 1;
                     cd09293"
                     /db_xref="CDD:187754"
     Region          162..185
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          186..215
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          216..241
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          242..267
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          268..294
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          295..320
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     CDS             1..357
                     /gene="AMN1"
                     /coded_by="XM_054073436.1:149..1222"
                     /db_xref="GeneID:104056351"
ORIGIN      
        1 mvwvrrdlka hrvptplpwv nqgaqspiqp glehlqgwgi hsfpgrplpa phqdtpsags
       61 gapcsdyisr rargrrrrrh lglagtaapp amsrlsgawd gagdqvqlll dlclrcltkn
      121 lsryaadmks lppnikdkli klmsmqgqit dsnisevlhp avefldlrdc disdkallql
      181 cnckqlkkin lnswkekrlg itsegviala lscpylreas fkrccgitds gvlalalncq
      241 flqivnlgsc sgimdaslqa lgenckflhs vdfsstlvtd dgvvalvsgt csknlkeihm
      301 eccvsltdva veavltccpk ihillfhgcp lmtdrsrdal eqlvlsnkmk qvtwtvy
//
LOCUS       XP_053929422             310 aa            linear   VRT 09-MAR-2023
DEFINITION  protein AMN1 homolog isoform X3 [Cuculus canorus].
ACCESSION   XP_053929422
VERSION     XP_053929422.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073447.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..310
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..310
                     /product="protein AMN1 homolog isoform X3"
                     /calculated_mol_wt=34363
     Region          70..94
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          89..309
                     /region_name="AMN1"
                     /note="Antagonist of mitotic exit network protein 1;
                     cd09293"
                     /db_xref="CDD:187754"
     Region          116..138
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          139..168
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          169..194
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          195..220
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          221..247
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          248..273
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     CDS             1..310
                     /gene="AMN1"
                     /coded_by="XM_054073447.1:501..1433"
                     /db_xref="GeneID:104056351"
ORIGIN      
        1 mckslfkhgc isclisssek ssfqacitfl dravfmyysl wflcttvcll wdeleekviy
       61 latktclrcl tknlsryaad mkslppnikd kliklmsmqg qitdsnisev lhpavefldl
      121 rdcdisdkal lqlcnckqlk kinlnswkek rlgitsegvi alalscpylr easfkrccgi
      181 tdsgvlalal ncqflqivnl gscsgimdas lqalgenckf lhsvdfsstl vtddgvvalv
      241 sgtcsknlke ihmeccvslt dvaveavltc cpkihillfh gcplmtdrsr daleqlvlsn
      301 kmkqvtwtvy
//
LOCUS       XP_053929433             291 aa            linear   VRT 09-MAR-2023
DEFINITION  protein AMN1 homolog isoform X4 [Cuculus canorus].
ACCESSION   XP_053929433
VERSION     XP_053929433.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073458.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..291
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..291
                     /product="protein AMN1 homolog isoform X4"
                     /calculated_mol_wt=31740
     Region          50..75
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          70..290
                     /region_name="AMN1"
                     /note="Antagonist of mitotic exit network protein 1;
                     cd09293"
                     /db_xref="CDD:187754"
     Region          97..119
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          120..149
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          150..175
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          176..201
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          202..228
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          229..254
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     CDS             1..291
                     /gene="AMN1"
                     /coded_by="XM_054073458.1:161..1036"
                     /db_xref="GeneID:104056351"
ORIGIN      
        1 mastctrgss dwtsgkissl kalcgtgtgr pgrclshhpw rylkdgclrc ltknlsryaa
       61 dmkslppnik dkliklmsmq gqitdsnise vlhpavefld lrdcdisdka llqlcnckql
      121 kkinlnswke krlgitsegv ialalscpyl reasfkrccg itdsgvlala lncqflqivn
      181 lgscsgimda slqalgenck flhsvdfsst lvtddgvval vsgtcsknlk eihmeccvsl
      241 tdvaveavlt ccpkihillf hgcplmtdrs rdaleqlvls nkmkqvtwtv y
//
LOCUS       XP_053929439             291 aa            linear   VRT 09-MAR-2023
DEFINITION  protein AMN1 homolog isoform X4 [Cuculus canorus].
ACCESSION   XP_053929439
VERSION     XP_053929439.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073464.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..291
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..291
                     /product="protein AMN1 homolog isoform X4"
                     /calculated_mol_wt=31740
     Region          50..75
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          70..290
                     /region_name="AMN1"
                     /note="Antagonist of mitotic exit network protein 1;
                     cd09293"
                     /db_xref="CDD:187754"
     Region          97..119
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          120..149
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          150..175
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          176..201
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          202..228
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          229..254
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     CDS             1..291
                     /gene="AMN1"
                     /coded_by="XM_054073464.1:580..1455"
                     /db_xref="GeneID:104056351"
ORIGIN      
        1 mastctrgss dwtsgkissl kalcgtgtgr pgrclshhpw rylkdgclrc ltknlsryaa
       61 dmkslppnik dkliklmsmq gqitdsnise vlhpavefld lrdcdisdka llqlcnckql
      121 kkinlnswke krlgitsegv ialalscpyl reasfkrccg itdsgvlala lncqflqivn
      181 lgscsgimda slqalgenck flhsvdfsst lvtddgvval vsgtcsknlk eihmeccvsl
      241 tdvaveavlt ccpkihillf hgcplmtdrs rdaleqlvls nkmkqvtwtv y
//
LOCUS       XP_053929446             250 aa            linear   VRT 09-MAR-2023
DEFINITION  protein AMN1 homolog isoform X5 [Cuculus canorus].
ACCESSION   XP_053929446
VERSION     XP_053929446.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073471.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..250
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..250
                     /product="protein AMN1 homolog isoform X5"
                     /calculated_mol_wt=27451
     Region          7..34
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          29..249
                     /region_name="AMN1"
                     /note="Antagonist of mitotic exit network protein 1;
                     cd09293"
                     /db_xref="CDD:187754"
     Region          56..78
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          79..108
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          109..134
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          135..160
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          161..187
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          188..213
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     CDS             1..250
                     /gene="AMN1"
                     /coded_by="XM_054073471.1:127..879"
                     /db_xref="GeneID:104056351"
ORIGIN      
        1 mqdsrclrcl tknlsryaad mkslppnikd kliklmsmqg qitdsnisev lhpavefldl
       61 rdcdisdkal lqlcnckqlk kinlnswkek rlgitsegvi alalscpylr easfkrccgi
      121 tdsgvlalal ncqflqivnl gscsgimdas lqalgenckf lhsvdfsstl vtddgvvalv
      181 sgtcsknlke ihmeccvslt dvaveavltc cpkihillfh gcplmtdrsr daleqlvlsn
      241 kmkqvtwtvy
//
LOCUS       XP_053929456             271 aa            linear   VRT 09-MAR-2023
DEFINITION  electron transfer flavoprotein beta subunit lysine
            methyltransferase [Cuculus canorus].
ACCESSION   XP_053929456
VERSION     XP_053929456.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073481.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..271
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..271
                     /product="electron transfer flavoprotein beta subunit
                     lysine methyltransferase"
                     /calculated_mol_wt=30732
     Region          52..264
                     /region_name="Nnt1"
                     /note="Protein N-terminal and lysine N-methylase,
                     NNT1/EFM7 family [Posttranslational modification, protein
                     turnover, chaperones]; COG3897"
                     /db_xref="CDD:443104"
     CDS             1..271
                     /gene="ETFBKMT"
                     /coded_by="XM_054073481.1:170..985"
                     /db_xref="GeneID:104056350"
ORIGIN      
        1 mafhgwkwlf lvgrqnsfak awrsrrggpp lcwkrcchwn agksldpevr afleentevt
       61 ssghltpeir lrlltprcrf wkekpdlwpy gdpfwaiywp ggqalsryil dnpcvvkgrs
      121 vldlgsgcga taiaavmsga sqvlandidp iagmamilnc elnhlnpfpi tikniinsev
      181 gnwdliflgd mfydeqlads lhhwlrtcir lqqtevligd pgrhqflshs irselhkvie
      241 yslpeytrqe nygltssivw syqpsnssen s
//
LOCUS       XP_053929467             863 aa            linear   VRT 09-MAR-2023
DEFINITION  transforming growth factor-beta receptor-associated protein 1
            [Cuculus canorus].
ACCESSION   XP_053929467
VERSION     XP_053929467.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073492.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..863
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..863
                     /product="transforming growth factor-beta
                     receptor-associated protein 1"
                     /calculated_mol_wt=98444
     Region          33..282
                     /region_name="CNH"
                     /note="CNH domain; cl02434"
                     /db_xref="CDD:470577"
     Region          447..549
                     /region_name="Vps39_1"
                     /note="Vacuolar sorting protein 39 domain 1; pfam10366"
                     /db_xref="CDD:371008"
     Region          591..719
                     /region_name="Clathrin"
                     /note="Region in Clathrin and VPS; pfam00637"
                     /db_xref="CDD:459884"
     Region          737..845
                     /region_name="Vps39_2"
                     /note="Vacuolar sorting protein 39 domain 2; pfam10367"
                     /db_xref="CDD:402126"
     CDS             1..863
                     /gene="TGFBRAP1"
                     /coded_by="XM_054073492.1:211..2802"
                     /db_xref="GeneID:104056635"
ORIGIN      
        1 msvkafklvs averemlmgd knyiniecie ccgknlyigt ndcfiyhfll dekvstagki
       61 tfaatkqlhk ylglkkpvse lkaasaltrl lvlcdntitl vnmmnldpvp tgarikgavt
      121 ftlnenpvsg dpfcvevcii svkrrtiqmf mvfedrvqiv kevftpeqpc avavdgyylc
      181 lalttqyiil nyntgfsqdl fpycsdekrp ivkrigrqef llagpgglgm fatvdgisqr
      241 apvhwsenvi gaalcfpyvv alddefitvh smldqqqkqt lpfkeghilq dfegkvivat
      301 nkgvyilvpl plekqiqdll ashrveealv lakgsrrnip kekfqvmykr ilqqagfiqf
      361 aqlqfleake lfrsgqldvr elislypfll ptsssfirsh pplheyadln qltqgdqekm
      421 tkckrflmsy lnevrsteva ngykedidta llklyaeanh eslldllvse nfclltdsaa
      481 wlekhkkyfa lgllyhyngq daaalqlwvk ivdgdiqdst rsdlyeyivd fltfcsdqdl
      541 vwkysewvlq kneevgvqif tkrpleeqek tninpddvir clnkypkgrv kylehlvler
      601 kiekekyhth lvvlyleail qlksvttdnc tettellfkl rsllqksdly rihfvldkiq
      661 gtelhmesai lygkleehek alhilvhelk dfhaaeeyci wnsenkdvqy rrrlfhmllt
      721 vylnpgtsdc elvmaavdll nnhaaefdaa lvlqlvpdsw svqllspfls gavrqsihtk
      781 rmtqvalgla qaenliykye kvkqrgtpil lsdrkvcqvc qnpfrepvfv rypnggmvhk
      841 hcaanrplns nmahhsssss nqt
//
LOCUS       XP_053929475             863 aa            linear   VRT 09-MAR-2023
DEFINITION  transforming growth factor-beta receptor-associated protein 1
            [Cuculus canorus].
ACCESSION   XP_053929475
VERSION     XP_053929475.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073500.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..863
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..863
                     /product="transforming growth factor-beta
                     receptor-associated protein 1"
                     /calculated_mol_wt=98444
     Region          33..282
                     /region_name="CNH"
                     /note="CNH domain; cl02434"
                     /db_xref="CDD:470577"
     Region          447..549
                     /region_name="Vps39_1"
                     /note="Vacuolar sorting protein 39 domain 1; pfam10366"
                     /db_xref="CDD:371008"
     Region          591..719
                     /region_name="Clathrin"
                     /note="Region in Clathrin and VPS; pfam00637"
                     /db_xref="CDD:459884"
     Region          737..845
                     /region_name="Vps39_2"
                     /note="Vacuolar sorting protein 39 domain 2; pfam10367"
                     /db_xref="CDD:402126"
     CDS             1..863
                     /gene="TGFBRAP1"
                     /coded_by="XM_054073500.1:1745..4336"
                     /db_xref="GeneID:104056635"
ORIGIN      
        1 msvkafklvs averemlmgd knyiniecie ccgknlyigt ndcfiyhfll dekvstagki
       61 tfaatkqlhk ylglkkpvse lkaasaltrl lvlcdntitl vnmmnldpvp tgarikgavt
      121 ftlnenpvsg dpfcvevcii svkrrtiqmf mvfedrvqiv kevftpeqpc avavdgyylc
      181 lalttqyiil nyntgfsqdl fpycsdekrp ivkrigrqef llagpgglgm fatvdgisqr
      241 apvhwsenvi gaalcfpyvv alddefitvh smldqqqkqt lpfkeghilq dfegkvivat
      301 nkgvyilvpl plekqiqdll ashrveealv lakgsrrnip kekfqvmykr ilqqagfiqf
      361 aqlqfleake lfrsgqldvr elislypfll ptsssfirsh pplheyadln qltqgdqekm
      421 tkckrflmsy lnevrsteva ngykedidta llklyaeanh eslldllvse nfclltdsaa
      481 wlekhkkyfa lgllyhyngq daaalqlwvk ivdgdiqdst rsdlyeyivd fltfcsdqdl
      541 vwkysewvlq kneevgvqif tkrpleeqek tninpddvir clnkypkgrv kylehlvler
      601 kiekekyhth lvvlyleail qlksvttdnc tettellfkl rsllqksdly rihfvldkiq
      661 gtelhmesai lygkleehek alhilvhelk dfhaaeeyci wnsenkdvqy rrrlfhmllt
      721 vylnpgtsdc elvmaavdll nnhaaefdaa lvlqlvpdsw svqllspfls gavrqsihtk
      781 rmtqvalgla qaenliykye kvkqrgtpil lsdrkvcqvc qnpfrepvfv rypnggmvhk
      841 hcaanrplns nmahhsssss nqt
//
LOCUS       XP_053929486            1008 aa            linear   VRT 09-MAR-2023
DEFINITION  anoctamin-4 isoform X1 [Cuculus canorus].
ACCESSION   XP_053929486
VERSION     XP_053929486.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073511.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1008
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1008
                     /product="anoctamin-4 isoform X1"
                     /calculated_mol_wt=116993
     Region          130..389
                     /region_name="Anoct_dimer"
                     /note="dimerization domain of Ca+-activated
                     chloride-channel, anoctamin; pfam16178"
                     /db_xref="CDD:465044"
     Region          392..973
                     /region_name="Anoctamin"
                     /note="Calcium-activated chloride channel; pfam04547"
                     /db_xref="CDD:461349"
     CDS             1..1008
                     /gene="ANO4"
                     /coded_by="XM_054073511.1:70..3096"
                     /db_xref="GeneID:104067494"
ORIGIN      
        1 mmsgislsih gaekrvqicq rktaasypvs qrppvvghps lpqvrrsikm easssgssis
       61 avtggkakth qpvakdvnif fdelegvnsp skdddsllhh gnltstsdda srlevvgeev
      121 pdknkangly frdgkcridy ilvyrksnpq tekrevfern iraeglqmek essltnsdii
      181 fvklhapwev lgkyaelmnv rmpfrpfnpf nagapcilvr ccflnghfie ingrsrrsrr
      241 kiyylhrryk fmnriekqis rfrgwlprkp mkldketlpd leendcytap fsqqrihhfi
      301 ihnkdtffnn atrsrivhhi lqrvkyeegk nkiglnrlls ngsyeaafpl hegsyrskns
      361 irthgaenhr hllyecwasw gvwykyqpld lvrryfgeki glyfawlgwy tgmlfpaafi
      421 glfvflygvt tlnhcqvske vcqatdiimc picdkycpfm rlsdscvyak vthlfdngat
      481 vffavfmavw atvflefwkr rraviaydwd lidweeeeee irpqfeakys kkermnpisg
      541 kpepyqafad kcsrlivsas giffmicvvi aavfgiviyr vvtvstfaaf kwalirnnsq
      601 vattgtavci nfciimllnv lyekvalflt nleqprtese wensftlkmf lfqfvnlnss
      661 tfyiafflgr ftghpgaylr linrwrleec hpsgclidlc mqmgiimvlk qtwnnfmelg
      721 ypliqnwwtr rklrqeygtq rktnfpqwek dynlqpmnay glfdeylemi lqfgfttifv
      781 aafplaplla llnniieirl daykfvtqwr rplasrakdi giwygilegi gilsvitnaf
      841 viavtsdfip rlvyaykygp cagqgeagqk cmvgyvnasl svflvsdfen rseptsngse
      901 fsgsplkycr yrdyrdppha svpygytlqf whvlaarlaf iivfehlvfc ikhlisylip
      961 dlpkdlrdrm rrekyliqem myeaelerlq kerkerkkng ksyhnewp
//
LOCUS       XP_053929495             996 aa            linear   VRT 09-MAR-2023
DEFINITION  anoctamin-4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053929495
VERSION     XP_053929495.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073520.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..996
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..996
                     /product="anoctamin-4 isoform X2"
                     /calculated_mol_wt=115931
     Region          118..377
                     /region_name="Anoct_dimer"
                     /note="dimerization domain of Ca+-activated
                     chloride-channel, anoctamin; pfam16178"
                     /db_xref="CDD:465044"
     Region          380..961
                     /region_name="Anoctamin"
                     /note="Calcium-activated chloride channel; pfam04547"
                     /db_xref="CDD:461349"
     CDS             1..996
                     /gene="ANO4"
                     /coded_by="XM_054073520.1:542..3532"
                     /db_xref="GeneID:104067494"
ORIGIN      
        1 measssgssi savtggkakt hqpegredlq vnqletqiwi kpgiqktdvd fseilnaihe
       61 iakdvniffd elegvnspsk dddsllhhgn ltstsddasr levvgeevpd knkanglyfr
      121 dgkcridyil vyrksnpqte krevfernir aeglqmekes sltnsdiifv klhapwevlg
      181 kyaelmnvrm pfrpfnpfna gapcilvrcc flnghfiein grsrrsrrki yylhrrykfm
      241 nriekqisrf rgwlprkpmk ldketlpdle endcytapfs qqrihhfiih nkdtffnnat
      301 rsrivhhilq rvkyeegknk iglnrllsng syeaafplhe gsyrsknsir thgaenhrhl
      361 lyecwaswgv wykyqpldlv rryfgekigl yfawlgwytg mlfpaafigl fvflygvttl
      421 nhcqvskevc qatdiimcpi cdkycpfmrl sdscvyakvt hlfdngatvf favfmavwat
      481 vflefwkrrr aviaydwdli dweeeeeeir pqfeakyskk ermnpisgkp epyqafadkc
      541 srlivsasgi ffmicvviaa vfgiviyrvv tvstfaafkw alirnnsqva ttgtavcinf
      601 ciimllnvly ekvalfltnl eqprtesewe nsftlkmflf qfvnlnsstf yiafflgrft
      661 ghpgaylrli nrwrleechp sgclidlcmq mgiimvlkqt wnnfmelgyp liqnwwtrrk
      721 lrqeygtqrk tnfpqwekdy nlqpmnaygl fdeylemilq fgfttifvaa fplapllall
      781 nniieirlda ykfvtqwrrp lasrakdigi wygilegigi lsvitnafvi avtsdfiprl
      841 vyaykygpca gqgeagqkcm vgyvnaslsv flvsdfenrs eptsngsefs gsplkycryr
      901 dyrdpphasv pygytlqfwh vlaarlafii vfehlvfcik hlisylipdl pkdlrdrmrr
      961 ekyliqemmy eaelerlqke rkerkkngks yhnewp
//
LOCUS       XP_053929505             996 aa            linear   VRT 09-MAR-2023
DEFINITION  anoctamin-4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053929505
VERSION     XP_053929505.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073530.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..996
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..996
                     /product="anoctamin-4 isoform X2"
                     /calculated_mol_wt=115931
     Region          118..377
                     /region_name="Anoct_dimer"
                     /note="dimerization domain of Ca+-activated
                     chloride-channel, anoctamin; pfam16178"
                     /db_xref="CDD:465044"
     Region          380..961
                     /region_name="Anoctamin"
                     /note="Calcium-activated chloride channel; pfam04547"
                     /db_xref="CDD:461349"
     CDS             1..996
                     /gene="ANO4"
                     /coded_by="XM_054073530.1:180..3170"
                     /db_xref="GeneID:104067494"
ORIGIN      
        1 measssgssi savtggkakt hqpegredlq vnqletqiwi kpgiqktdvd fseilnaihe
       61 iakdvniffd elegvnspsk dddsllhhgn ltstsddasr levvgeevpd knkanglyfr
      121 dgkcridyil vyrksnpqte krevfernir aeglqmekes sltnsdiifv klhapwevlg
      181 kyaelmnvrm pfrpfnpfna gapcilvrcc flnghfiein grsrrsrrki yylhrrykfm
      241 nriekqisrf rgwlprkpmk ldketlpdle endcytapfs qqrihhfiih nkdtffnnat
      301 rsrivhhilq rvkyeegknk iglnrllsng syeaafplhe gsyrsknsir thgaenhrhl
      361 lyecwaswgv wykyqpldlv rryfgekigl yfawlgwytg mlfpaafigl fvflygvttl
      421 nhcqvskevc qatdiimcpi cdkycpfmrl sdscvyakvt hlfdngatvf favfmavwat
      481 vflefwkrrr aviaydwdli dweeeeeeir pqfeakyskk ermnpisgkp epyqafadkc
      541 srlivsasgi ffmicvviaa vfgiviyrvv tvstfaafkw alirnnsqva ttgtavcinf
      601 ciimllnvly ekvalfltnl eqprtesewe nsftlkmflf qfvnlnsstf yiafflgrft
      661 ghpgaylrli nrwrleechp sgclidlcmq mgiimvlkqt wnnfmelgyp liqnwwtrrk
      721 lrqeygtqrk tnfpqwekdy nlqpmnaygl fdeylemilq fgfttifvaa fplapllall
      781 nniieirlda ykfvtqwrrp lasrakdigi wygilegigi lsvitnafvi avtsdfiprl
      841 vyaykygpca gqgeagqkcm vgyvnaslsv flvsdfenrs eptsngsefs gsplkycryr
      901 dyrdpphasv pygytlqfwh vlaarlafii vfehlvfcik hlisylipdl pkdlrdrmrr
      961 ekyliqemmy eaelerlqke rkerkkngks yhnewp
//
LOCUS       XP_053929514             996 aa            linear   VRT 09-MAR-2023
DEFINITION  anoctamin-4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053929514
VERSION     XP_053929514.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073539.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..996
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..996
                     /product="anoctamin-4 isoform X2"
                     /calculated_mol_wt=115931
     Region          118..377
                     /region_name="Anoct_dimer"
                     /note="dimerization domain of Ca+-activated
                     chloride-channel, anoctamin; pfam16178"
                     /db_xref="CDD:465044"
     Region          380..961
                     /region_name="Anoctamin"
                     /note="Calcium-activated chloride channel; pfam04547"
                     /db_xref="CDD:461349"
     CDS             1..996
                     /gene="ANO4"
                     /coded_by="XM_054073539.1:209..3199"
                     /db_xref="GeneID:104067494"
ORIGIN      
        1 measssgssi savtggkakt hqpegredlq vnqletqiwi kpgiqktdvd fseilnaihe
       61 iakdvniffd elegvnspsk dddsllhhgn ltstsddasr levvgeevpd knkanglyfr
      121 dgkcridyil vyrksnpqte krevfernir aeglqmekes sltnsdiifv klhapwevlg
      181 kyaelmnvrm pfrpfnpfna gapcilvrcc flnghfiein grsrrsrrki yylhrrykfm
      241 nriekqisrf rgwlprkpmk ldketlpdle endcytapfs qqrihhfiih nkdtffnnat
      301 rsrivhhilq rvkyeegknk iglnrllsng syeaafplhe gsyrsknsir thgaenhrhl
      361 lyecwaswgv wykyqpldlv rryfgekigl yfawlgwytg mlfpaafigl fvflygvttl
      421 nhcqvskevc qatdiimcpi cdkycpfmrl sdscvyakvt hlfdngatvf favfmavwat
      481 vflefwkrrr aviaydwdli dweeeeeeir pqfeakyskk ermnpisgkp epyqafadkc
      541 srlivsasgi ffmicvviaa vfgiviyrvv tvstfaafkw alirnnsqva ttgtavcinf
      601 ciimllnvly ekvalfltnl eqprtesewe nsftlkmflf qfvnlnsstf yiafflgrft
      661 ghpgaylrli nrwrleechp sgclidlcmq mgiimvlkqt wnnfmelgyp liqnwwtrrk
      721 lrqeygtqrk tnfpqwekdy nlqpmnaygl fdeylemilq fgfttifvaa fplapllall
      781 nniieirlda ykfvtqwrrp lasrakdigi wygilegigi lsvitnafvi avtsdfiprl
      841 vyaykygpca gqgeagqkcm vgyvnaslsv flvsdfenrs eptsngsefs gsplkycryr
      901 dyrdpphasv pygytlqfwh vlaarlafii vfehlvfcik hlisylipdl pkdlrdrmrr
      961 ekyliqemmy eaelerlqke rkerkkngks yhnewp
//
LOCUS       XP_053929523             996 aa            linear   VRT 09-MAR-2023
DEFINITION  anoctamin-4 isoform X3 [Cuculus canorus].
ACCESSION   XP_053929523
VERSION     XP_053929523.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073548.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..996
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..996
                     /product="anoctamin-4 isoform X3"
                     /calculated_mol_wt=115601
     Region          118..377
                     /region_name="Anoct_dimer"
                     /note="dimerization domain of Ca+-activated
                     chloride-channel, anoctamin; pfam16178"
                     /db_xref="CDD:465044"
     Region          380..961
                     /region_name="Anoctamin"
                     /note="Calcium-activated chloride channel; pfam04547"
                     /db_xref="CDD:461349"
     CDS             1..996
                     /gene="ANO4"
                     /coded_by="XM_054073548.1:71..3061"
                     /db_xref="GeneID:104067494"
ORIGIN      
        1 mmsgislsih gaekrvqicq rktaasypvs qrppvvghps lpqvrrsikm easssgssis
       61 avtggkakth qpegvnspsk dddsllhhgn ltstsddasr levvgeevpd knkanglyfr
      121 dgkcridyil vyrksnpqte krevfernir aeglqmekes sltnsdiifv klhapwevlg
      181 kyaelmnvrm pfrpfnpfna gapcilvrcc flnghfiein grsrrsrrki yylhrrykfm
      241 nriekqisrf rgwlprkpmk ldketlpdle endcytapfs qqrihhfiih nkdtffnnat
      301 rsrivhhilq rvkyeegknk iglnrllsng syeaafplhe gsyrsknsir thgaenhrhl
      361 lyecwaswgv wykyqpldlv rryfgekigl yfawlgwytg mlfpaafigl fvflygvttl
      421 nhcqvskevc qatdiimcpi cdkycpfmrl sdscvyakvt hlfdngatvf favfmavwat
      481 vflefwkrrr aviaydwdli dweeeeeeir pqfeakyskk ermnpisgkp epyqafadkc
      541 srlivsasgi ffmicvviaa vfgiviyrvv tvstfaafkw alirnnsqva ttgtavcinf
      601 ciimllnvly ekvalfltnl eqprtesewe nsftlkmflf qfvnlnsstf yiafflgrft
      661 ghpgaylrli nrwrleechp sgclidlcmq mgiimvlkqt wnnfmelgyp liqnwwtrrk
      721 lrqeygtqrk tnfpqwekdy nlqpmnaygl fdeylemilq fgfttifvaa fplapllall
      781 nniieirlda ykfvtqwrrp lasrakdigi wygilegigi lsvitnafvi avtsdfiprl
      841 vyaykygpca gqgeagqkcm vgyvnaslsv flvsdfenrs eptsngsefs gsplkycryr
      901 dyrdpphasv pygytlqfwh vlaarlafii vfehlvfcik hlisylipdl pkdlrdrmrr
      961 ekyliqemmy eaelerlqke rkerkkngks yhnewp
//
LOCUS       XP_053929529             939 aa            linear   VRT 09-MAR-2023
DEFINITION  anoctamin-4 isoform X4 [Cuculus canorus].
ACCESSION   XP_053929529
VERSION     XP_053929529.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073554.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..939
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..939
                     /product="anoctamin-4 isoform X4"
                     /calculated_mol_wt=109843
     Region          61..320
                     /region_name="Anoct_dimer"
                     /note="dimerization domain of Ca+-activated
                     chloride-channel, anoctamin; pfam16178"
                     /db_xref="CDD:465044"
     Region          323..904
                     /region_name="Anoctamin"
                     /note="Calcium-activated chloride channel; pfam04547"
                     /db_xref="CDD:461349"
     CDS             1..939
                     /gene="ANO4"
                     /coded_by="XM_054073554.1:146..2965"
                     /db_xref="GeneID:104067494"
ORIGIN      
        1 mrniakdvni ffdelegvns pskdddsllh hgnltstsdd asrlevvgee vpdknkangl
       61 yfrdgkcrid yilvyrksnp qtekrevfer niraeglqme kessltnsdi ifvklhapwe
      121 vlgkyaelmn vrmpfrpfnp fnagapcilv rccflnghfi eingrsrrsr rkiyylhrry
      181 kfmnriekqi srfrgwlprk pmkldketlp dleendcyta pfsqqrihhf iihnkdtffn
      241 natrsrivhh ilqrvkyeeg knkiglnrll sngsyeaafp lhegsyrskn sirthgaenh
      301 rhllyecwas wgvwykyqpl dlvrryfgek iglyfawlgw ytgmlfpaaf iglfvflygv
      361 ttlnhcqvsk evcqatdiim cpicdkycpf mrlsdscvya kvthlfdnga tvffavfmav
      421 watvflefwk rrraviaydw dlidweeeee eirpqfeaky skkermnpis gkpepyqafa
      481 dkcsrlivsa sgiffmicvv iaavfgiviy rvvtvstfaa fkwalirnns qvattgtavc
      541 infciimlln vlyekvalfl tnleqprtes ewensftlkm flfqfvnlns stfyiafflg
      601 rftghpgayl rlinrwrlee chpsgclidl cmqmgiimvl kqtwnnfmel gypliqnwwt
      661 rrklrqeygt qrktnfpqwe kdynlqpmna yglfdeylem ilqfgfttif vaafplapll
      721 allnniieir ldaykfvtqw rrplasrakd igiwygileg igilsvitna fviavtsdfi
      781 prlvyaykyg pcagqgeagq kcmvgyvnas lsvflvsdfe nrseptsngs efsgsplkyc
      841 ryrdyrdpph asvpygytlq fwhvlaarla fiivfehlvf cikhlisyli pdlpkdlrdr
      901 mrrekyliqe mmyeaelerl qkerkerkkn gksyhnewp
//
LOCUS       XP_053929539             811 aa            linear   VRT 09-MAR-2023
DEFINITION  anoctamin-4 isoform X5 [Cuculus canorus].
ACCESSION   XP_053929539
VERSION     XP_053929539.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073564.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..811
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..811
                     /product="anoctamin-4 isoform X5"
                     /calculated_mol_wt=95200
     Region          <53..192
                     /region_name="Anoct_dimer"
                     /note="dimerization domain of Ca+-activated
                     chloride-channel, anoctamin; pfam16178"
                     /db_xref="CDD:465044"
     Region          195..776
                     /region_name="Anoctamin"
                     /note="Calcium-activated chloride channel; pfam04547"
                     /db_xref="CDD:461349"
     CDS             1..811
                     /gene="ANO4"
                     /coded_by="XM_054073564.1:688..3123"
                     /db_xref="GeneID:104067494"
ORIGIN      
        1 mnvrmpfrpf npfnagapci lvrccflngh fieingrsrr srrkiyylhr rykfmnriek
       61 qisrfrgwlp rkpmkldket lpdleendcy tapfsqqrih hfiihnkdtf fnnatrsriv
      121 hhilqrvkye egknkiglnr llsngsyeaa fplhegsyrs knsirthgae nhrhllyecw
      181 aswgvwykyq pldlvrryfg ekiglyfawl gwytgmlfpa afiglfvfly gvttlnhcqv
      241 skevcqatdi imcpicdkyc pfmrlsdscv yakvthlfdn gatvffavfm avwatvflef
      301 wkrrraviay dwdlidweee eeeirpqfea kyskkermnp isgkpepyqa fadkcsrliv
      361 sasgiffmic vviaavfgiv iyrvvtvstf aafkwalirn nsqvattgta vcinfciiml
      421 lnvlyekval fltnleqprt esewensftl kmflfqfvnl nsstfyiaff lgrftghpga
      481 ylrlinrwrl eechpsgcli dlcmqmgiim vlkqtwnnfm elgypliqnw wtrrklrqey
      541 gtqrktnfpq wekdynlqpm nayglfdeyl emilqfgftt ifvaafplap llallnniie
      601 irldaykfvt qwrrplasra kdigiwygil egigilsvit nafviavtsd fiprlvyayk
      661 ygpcagqgea gqkcmvgyvn aslsvflvsd fenrseptsn gsefsgsplk ycryrdyrdp
      721 phasvpygyt lqfwhvlaar lafiivfehl vfcikhlisy lipdlpkdlr drmrrekyli
      781 qemmyeaele rlqkerkerk kngksyhnew p
//
LOCUS       XP_053929548             784 aa            linear   VRT 09-MAR-2023
DEFINITION  anoctamin-4 isoform X6 [Cuculus canorus].
ACCESSION   XP_053929548
VERSION     XP_053929548.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073573.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..784
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..784
                     /product="anoctamin-4 isoform X6"
                     /calculated_mol_wt=92119
     Region          <26..165
                     /region_name="Anoct_dimer"
                     /note="dimerization domain of Ca+-activated
                     chloride-channel, anoctamin; pfam16178"
                     /db_xref="CDD:465044"
     Region          168..749
                     /region_name="Anoctamin"
                     /note="Calcium-activated chloride channel; pfam04547"
                     /db_xref="CDD:461349"
     CDS             1..784
                     /gene="ANO4"
                     /coded_by="XM_054073573.1:831..3185"
                     /db_xref="GeneID:104067494"
ORIGIN      
        1 mgflldwlhf ccssrrkiyy lhrrykfmnr iekqisrfrg wlprkpmkld ketlpdleen
       61 dcytapfsqq rihhfiihnk dtffnnatrs rivhhilqrv kyeegknkig lnrllsngsy
      121 eaafplhegs yrsknsirth gaenhrhlly ecwaswgvwy kyqpldlvrr yfgekiglyf
      181 awlgwytgml fpaafiglfv flygvttlnh cqvskevcqa tdiimcpicd kycpfmrlsd
      241 scvyakvthl fdngatvffa vfmavwatvf lefwkrrrav iaydwdlidw eeeeeeirpq
      301 feakyskker mnpisgkpep yqafadkcsr livsasgiff micvviaavf giviyrvvtv
      361 stfaafkwal irnnsqvatt gtavcinfci imllnvlyek valfltnleq prtesewens
      421 ftlkmflfqf vnlnsstfyi afflgrftgh pgaylrlinr wrleechpsg clidlcmqmg
      481 iimvlkqtwn nfmelgypli qnwwtrrklr qeygtqrktn fpqwekdynl qpmnayglfd
      541 eylemilqfg fttifvaafp lapllallnn iieirldayk fvtqwrrpla srakdigiwy
      601 gilegigils vitnafviav tsdfiprlvy aykygpcagq geagqkcmvg yvnaslsvfl
      661 vsdfenrsep tsngsefsgs plkycryrdy rdpphasvpy gytlqfwhvl aarlafiivf
      721 ehlvfcikhl isylipdlpk dlrdrmrrek yliqemmyea elerlqkerk erkkngksyh
      781 newp
//
LOCUS       XP_053929553             784 aa            linear   VRT 09-MAR-2023
DEFINITION  anoctamin-4 isoform X6 [Cuculus canorus].
ACCESSION   XP_053929553
VERSION     XP_053929553.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073578.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..784
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..784
                     /product="anoctamin-4 isoform X6"
                     /calculated_mol_wt=92119
     Region          <26..165
                     /region_name="Anoct_dimer"
                     /note="dimerization domain of Ca+-activated
                     chloride-channel, anoctamin; pfam16178"
                     /db_xref="CDD:465044"
     Region          168..749
                     /region_name="Anoctamin"
                     /note="Calcium-activated chloride channel; pfam04547"
                     /db_xref="CDD:461349"
     CDS             1..784
                     /gene="ANO4"
                     /coded_by="XM_054073578.1:729..3083"
                     /db_xref="GeneID:104067494"
ORIGIN      
        1 mgflldwlhf ccssrrkiyy lhrrykfmnr iekqisrfrg wlprkpmkld ketlpdleen
       61 dcytapfsqq rihhfiihnk dtffnnatrs rivhhilqrv kyeegknkig lnrllsngsy
      121 eaafplhegs yrsknsirth gaenhrhlly ecwaswgvwy kyqpldlvrr yfgekiglyf
      181 awlgwytgml fpaafiglfv flygvttlnh cqvskevcqa tdiimcpicd kycpfmrlsd
      241 scvyakvthl fdngatvffa vfmavwatvf lefwkrrrav iaydwdlidw eeeeeeirpq
      301 feakyskker mnpisgkpep yqafadkcsr livsasgiff micvviaavf giviyrvvtv
      361 stfaafkwal irnnsqvatt gtavcinfci imllnvlyek valfltnleq prtesewens
      421 ftlkmflfqf vnlnsstfyi afflgrftgh pgaylrlinr wrleechpsg clidlcmqmg
      481 iimvlkqtwn nfmelgypli qnwwtrrklr qeygtqrktn fpqwekdynl qpmnayglfd
      541 eylemilqfg fttifvaafp lapllallnn iieirldayk fvtqwrrpla srakdigiwy
      601 gilegigils vitnafviav tsdfiprlvy aykygpcagq geagqkcmvg yvnaslsvfl
      661 vsdfenrsep tsngsefsgs plkycryrdy rdpphasvpy gytlqfwhvl aarlafiivf
      721 ehlvfcikhl isylipdlpk dlrdrmrrek yliqemmyea elerlqkerk erkkngksyh
      781 newp
//
LOCUS       XP_053929562             784 aa            linear   VRT 09-MAR-2023
DEFINITION  anoctamin-4 isoform X6 [Cuculus canorus].
ACCESSION   XP_053929562
VERSION     XP_053929562.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073587.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..784
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..784
                     /product="anoctamin-4 isoform X6"
                     /calculated_mol_wt=92119
     Region          <26..165
                     /region_name="Anoct_dimer"
                     /note="dimerization domain of Ca+-activated
                     chloride-channel, anoctamin; pfam16178"
                     /db_xref="CDD:465044"
     Region          168..749
                     /region_name="Anoctamin"
                     /note="Calcium-activated chloride channel; pfam04547"
                     /db_xref="CDD:461349"
     CDS             1..784
                     /gene="ANO4"
                     /coded_by="XM_054073587.1:136..2490"
                     /db_xref="GeneID:104067494"
ORIGIN      
        1 mgflldwlhf ccssrrkiyy lhrrykfmnr iekqisrfrg wlprkpmkld ketlpdleen
       61 dcytapfsqq rihhfiihnk dtffnnatrs rivhhilqrv kyeegknkig lnrllsngsy
      121 eaafplhegs yrsknsirth gaenhrhlly ecwaswgvwy kyqpldlvrr yfgekiglyf
      181 awlgwytgml fpaafiglfv flygvttlnh cqvskevcqa tdiimcpicd kycpfmrlsd
      241 scvyakvthl fdngatvffa vfmavwatvf lefwkrrrav iaydwdlidw eeeeeeirpq
      301 feakyskker mnpisgkpep yqafadkcsr livsasgiff micvviaavf giviyrvvtv
      361 stfaafkwal irnnsqvatt gtavcinfci imllnvlyek valfltnleq prtesewens
      421 ftlkmflfqf vnlnsstfyi afflgrftgh pgaylrlinr wrleechpsg clidlcmqmg
      481 iimvlkqtwn nfmelgypli qnwwtrrklr qeygtqrktn fpqwekdynl qpmnayglfd
      541 eylemilqfg fttifvaafp lapllallnn iieirldayk fvtqwrrpla srakdigiwy
      601 gilegigils vitnafviav tsdfiprlvy aykygpcagq geagqkcmvg yvnaslsvfl
      661 vsdfenrsep tsngsefsgs plkycryrdy rdpphasvpy gytlqfwhvl aarlafiivf
      721 ehlvfcikhl isylipdlpk dlrdrmrrek yliqemmyea elerlqkerk erkkngksyh
      781 newp
//
LOCUS       XP_053929571             613 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium-coupled monocarboxylate transporter 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053929571
VERSION     XP_053929571.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073596.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..613
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..613
                     /product="sodium-coupled monocarboxylate transporter 1
                     isoform X1"
                     /calculated_mol_wt=66023
     Region          1..538
                     /region_name="SLC5-6-like_sbd"
                     /note="Solute carrier families 5 and 6-like; solute
                     binding domain; cl00456"
                     /db_xref="CDD:444915"
     Site            order(57,60,342,345..346)
                     /site_type="other"
                     /note="Na binding site [ion binding]"
                     /db_xref="CDD:271356"
     CDS             1..613
                     /gene="SLC5A8"
                     /coded_by="XM_054073596.1:790..2631"
                     /db_xref="GeneID:104067492"
ORIGIN      
        1 mahftawdyv vfsamllvsa aigiyhavag ggqktskefl mggrrmnalp valsltasfm
       61 savtvlgtpa eiyrfgaifc ifaityslvv vcsseiflpv fyklgitsay eylelrfnky
      121 lrlcgtalfi iqtilytgiv iyapalalnq vtgfhlwgav vatglvctfy ctlgglkavv
      181 wtdvlqiavm vagfsaviir svliqegigr ilsdsynggr lnfwdfnpnp lqrhtfwtiv
      241 vggtftwtsi ygvsqsqvqr yiacksrfha klslyinlvg lwailacatl cglclysiyk
      301 dcdpwtakqv sapdqlmpyl vmdilsdfpg vpglfvacay sgtlstvsss inalaavtve
      361 dlikpyfrsl sekklswism gmslfyggvc iamaalasll gallqaalsi fgiiggpllg
      421 vftlgilcsf aneigafvgl asgflislwv gigsqiyppl pertkplils tagcnislgn
      481 ltstqnpltt iitpaavrpa ladnwyslsy lyfstlgtli tvtvgiiisl ltgglkqktd
      541 ckflltkedf lsnfswikse ttekveglnw kpftvaaegs dntvagegtd npafssfemd
      601 vannenkvng lhi
//
LOCUS       XP_053929579             537 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium-coupled monocarboxylate transporter 1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053929579
VERSION     XP_053929579.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073604.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..537
                     /product="sodium-coupled monocarboxylate transporter 1
                     isoform X2"
                     /calculated_mol_wt=57696
     Region          1..536
                     /region_name="SLC5-6-like_sbd"
                     /note="Solute carrier families 5 and 6-like; solute
                     binding domain; cl00456"
                     /db_xref="CDD:444915"
     Site            order(57,60,342,345..346)
                     /site_type="other"
                     /note="Na binding site [ion binding]"
                     /db_xref="CDD:271356"
     CDS             1..537
                     /gene="SLC5A8"
                     /coded_by="XM_054073604.1:790..2403"
                     /db_xref="GeneID:104067492"
ORIGIN      
        1 mahftawdyv vfsamllvsa aigiyhavag ggqktskefl mggrrmnalp valsltasfm
       61 savtvlgtpa eiyrfgaifc ifaityslvv vcsseiflpv fyklgitsay eylelrfnky
      121 lrlcgtalfi iqtilytgiv iyapalalnq vtgfhlwgav vatglvctfy ctlgglkavv
      181 wtdvlqiavm vagfsaviir svliqegigr ilsdsynggr lnfwdfnpnp lqrhtfwtiv
      241 vggtftwtsi ygvsqsqvqr yiacksrfha klslyinlvg lwailacatl cglclysiyk
      301 dcdpwtakqv sapdqlmpyl vmdilsdfpg vpglfvacay sgtlstvsss inalaavtve
      361 dlikpyfrsl sekklswism gmslfyggvc iamaalasll gallqaalsi fgiiggpllg
      421 vftlgilcsf aneigafvgl asgflislwv gigsqiyppl pertkplils tagcnislgn
      481 ltstqnpltt iitpaavrpa ladnwyslsy lyfstlgtli tvtvgiiisl ltdarrg
//
LOCUS       XP_053929591             405 aa            linear   VRT 09-MAR-2023
DEFINITION  serpin H1 [Cuculus canorus].
ACCESSION   XP_053929591
VERSION     XP_053929591.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073616.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..405
                     /product="serpin H1"
                     /calculated_mol_wt=45659
     Region          23..404
                     /region_name="serpinH1_CBP1"
                     /note="serpin family H member 1, collagen-binding protein
                     1; cd02046"
                     /db_xref="CDD:381003"
     Site            order(202,205,207,209,212,215,225,290,292,355,358,366,368,
                     370,372..373)
                     /site_type="other"
                     /note="collagen binding site [polypeptide binding]"
                     /db_xref="CDD:381003"
     Site            350..374
                     /site_type="other"
                     /note="reactive center loop (RCL)"
                     /db_xref="CDD:381003"
     CDS             1..405
                     /gene="SERPINH1"
                     /coded_by="XM_054073616.1:191..1408"
                     /db_xref="GeneID:104064121"
ORIGIN      
        1 mwiilvlalc glaaavpsed rklsdkattl adrsttlafn lyhamakdkn menillspvv
       61 vasslglvsl ggkattasqa kavlsadkln ddylhsglse llnevsnsta rnvtwkignr
      121 lygpasinfa ddfvknskkh ynyehskinf rdkrsalksi newaaqttdg klpevtkdve
      181 ktdgalivna mffkphwdek fhhkmvdnrg fmvtrsytvg vpmmhrtgly nyyddetekl
      241 qvvemplahk lssmifimpn hveplervek llnreqlktw agkmkkrsva islpkvilev
      301 shdlqkhlad lglteaidkt kadlskisgk kdlylsnvfh aaalewdtdg npydadiygr
      361 eemrnprlfy adhpfifmik dnktnsvlfi grlvrpkgek mrdel
//
LOCUS       XP_009564711             405 aa            linear   VRT 09-MAR-2023
DEFINITION  serpin H1 [Cuculus canorus].
ACCESSION   XP_009564711
VERSION     XP_009564711.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566416.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564711.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..405
                     /product="serpin H1"
                     /calculated_mol_wt=45659
     Region          23..404
                     /region_name="serpinH1_CBP1"
                     /note="serpin family H member 1, collagen-binding protein
                     1; cd02046"
                     /db_xref="CDD:381003"
     Site            order(202,205,207,209,212,215,225,290,292,355,358,366,368,
                     370,372..373)
                     /site_type="other"
                     /note="collagen binding site [polypeptide binding]"
                     /db_xref="CDD:381003"
     Site            350..374
                     /site_type="other"
                     /note="reactive center loop (RCL)"
                     /db_xref="CDD:381003"
     CDS             1..405
                     /gene="SERPINH1"
                     /coded_by="XM_009566416.2:192..1409"
                     /db_xref="GeneID:104064121"
ORIGIN      
        1 mwiilvlalc glaaavpsed rklsdkattl adrsttlafn lyhamakdkn menillspvv
       61 vasslglvsl ggkattasqa kavlsadkln ddylhsglse llnevsnsta rnvtwkignr
      121 lygpasinfa ddfvknskkh ynyehskinf rdkrsalksi newaaqttdg klpevtkdve
      181 ktdgalivna mffkphwdek fhhkmvdnrg fmvtrsytvg vpmmhrtgly nyyddetekl
      241 qvvemplahk lssmifimpn hveplervek llnreqlktw agkmkkrsva islpkvilev
      301 shdlqkhlad lglteaidkt kadlskisgk kdlylsnvfh aaalewdtdg npydadiygr
      361 eemrnprlfy adhpfifmik dnktnsvlfi grlvrpkgek mrdel
//
LOCUS       XP_053929607             243 aa            linear   VRT 09-MAR-2023
DEFINITION  40S ribosomal protein S3 [Cuculus canorus].
ACCESSION   XP_053929607
VERSION     XP_053929607.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073632.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..243
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..243
                     /product="40S ribosomal protein S3"
                     /calculated_mol_wt=26588
     Region          4..216
                     /region_name="PTZ00084"
                     /note="40S ribosomal protein S3; Provisional"
                     /db_xref="CDD:240260"
     CDS             1..243
                     /gene="RPS3"
                     /coded_by="XM_054073632.1:63..794"
                     /db_xref="GeneID:104064119"
ORIGIN      
        1 mavqiskkrk fvadgifkae lnefltrela edgysgvevr vtptrteiii latrtqnvlg
       61 ekgrrirelt avvqkrfgfp egsvelyaek vatrglcaia qaeslrykll gglavrracy
      121 gvlrfimesg akgcevvvsg klrgqraksm kfvdglmihs gdpvnyyvdt avrhvllrqg
      181 vlgikvkiml pwdpsgkigp kkplpdhvsi vepkeeilpt tpiseqkggk peqpampqpv
      241 pta
//
LOCUS       XP_053929619             924 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: transportin-3 [Cuculus canorus].
ACCESSION   XP_053929619
VERSION     XP_053929619.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073644.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..924
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..924
                     /product="LOW QUALITY PROTEIN: transportin-3"
                     /calculated_mol_wt=103815
     Region          34..97
                     /region_name="IBN_N"
                     /note="Importin-beta N-terminal domain; smart00913"
                     /db_xref="CDD:197981"
     Region          121..250
                     /region_name="Xpo1"
                     /note="Exportin 1-like protein; pfam08389"
                     /db_xref="CDD:462459"
     CDS             1..924
                     /gene="TNPO3"
                     /coded_by="XM_054073644.1:101..2875"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 2 codons"
                     /db_xref="GeneID:104061380"
ORIGIN      
        1 megggkpslq vvyqavqaly hdpdpsgker ascwlgelqr svhaweisdq llqirqdves
       61 cyfaaqtmkm kiqtsfyelp tdshaslrds llshiqnlkd lspvivtqla laiadlalqm
      121 aswkgcvqtl vekysndvts lpflleiltv lpeevhsrsl riganrrtei iedlayysst
      181 vvsllmtcve kagndekmli kifrclgswf nlgvldstfm anskllsllf evlqqdktss
      241 nlheaasdcv csalyaienv etnlplalql fqgvltlesa yhmavaredl dkvlnycrvf
      301 telcetfldk ivctpgqglg dlrtlellli caghpqyevv eisfnfwyrl gehlyktdda
      361 vihsifkayi qrllhalarh cqldsdhegv peetddfgef rmrvsdlvkd liflvgsvec
      421 faqlyatlkd gnppwevtea vlfimasiak svdqennptl vevlegvvrl petvhtavry
      481 tsielvgems evvdrnpqfl dpvlgylmkg lcdrrlasaa akaihnicsv crdhmaqhfn
      541 glleiarsld sftlspeaav gllkgtalvl arlplekiae clselcavqv malrkllsqe
      601 psnglssdpt vpldrlavif rhtnpiveng qihpcqkviq eiwpvlsetl nkhsadnriv
      661 erccrclrfa vrcvgkgsaa llqplvtqmv nvyrahqhsc flylgsilvd eygmeegcrq
      721 glldmlqalc iptfqlleqp nglqnhpdtv ddlfrlaarf iqrspvtllr sqvmipilqw
      781 aiaattldhr dancsvmkfl rdlihtgvan dheedfevrk elinqvmnql gqqlvnqllh
      841 tccfclppyt lpdvaevlwe imqidrptfc rwlenslkgl pkettggaiq vthkqltdfh
      901 kqvtsaeeck qvcwalrdft rlfr
//
LOCUS       XP_053929629             494 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: interferon regulatory factor 5 [Cuculus
            canorus].
ACCESSION   XP_053929629
VERSION     XP_053929629.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073654.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 6 indels
            internal stop codons :: corrected 1 genomic stop codons
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..494
                     /product="LOW QUALITY PROTEIN: interferon regulatory
                     factor 5"
                     /calculated_mol_wt=55300
     Region          20..126
                     /region_name="IRF"
                     /note="Interferon regulatory factor transcription factor;
                     pfam00605"
                     /db_xref="CDD:459863"
     Site            order(53,94,96..97,100)
                     /site_type="other"
                     /note="DNA sequence recognition sites [nucleotide
                     binding]"
                     /db_xref="CDD:238051"
     Site            order(99..100,102,105)
                     /site_type="metal-binding"
                     /db_xref="CDD:238051"
     Region          249..432
                     /region_name="IRF-3"
                     /note="Interferon-regulatory factor 3; pfam10401"
                     /db_xref="CDD:463076"
     CDS             1..494
                     /gene="IRF5"
                     /coded_by="XM_054073654.1:24..1508"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 7 bases in 5 codons; substituted 1 base at 1
                     genomic stop codon"
                     /db_xref="GeneID:104061381"
ORIGIN      
        1 mrkrraqvrp pmdtpsrrvr lrpwlvaqvs sgrfpglhwl dperrrfaip wlhatrhlga
       61 ppdsherprr rgqrdtgrfh egrdapdpar wkatlrapsn ksrefrlvld gpravppvpy
      121 rvyelclgsn rxadeddydy geegdvsqlq kmtslsisdt qhggdllppy pwpkeexpll
      181 aaaapvasfa ppppvllpre vggthgppel pptalaepgp plappaacpl vpmeqvipnl
      241 lisphmlplt dlelkfqyrg rqvcaltisn phgcrlfhss leptqeqvel fgpltleqvr
      301 fpatdaipne kqrfythqll dvldrglile lqgqdlyair lcqckvfwtg pcashhtgpn
      361 pierekktkl fslegflngl ilfqkgqttt pppfeiffcf geewpdqkpk ekklitvqvv
      421 pvaarlllem fsgelswsad siplqishpd lkdkmveqfk elhqlwqnqq rlptaqpeps
      481 patgpwalpp gslp
//
LOCUS       XP_009555274             350 aa            linear   VRT 09-MAR-2023
DEFINITION  limbic system-associated membrane protein isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009555274
VERSION     XP_009555274.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556979.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..350
                     /product="limbic system-associated membrane protein
                     isoform X1"
                     /calculated_mol_wt=38672
     Region          38..128
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          49..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          61..65
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          94..98
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          108..113
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          121..124
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          131..201
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     Region          218..294
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     CDS             1..350
                     /gene="LSAMP"
                     /coded_by="XM_009556979.2:426..1478"
                     /db_xref="GeneID:104055800"
ORIGIN      
        1 mvaraqpdrk qlplvllrll cllptglpvr svdftrgtdn itvrqgdtai lrcyvedrss
       61 kvawlnrsgi ifagedkwsl dprvelekrn pleyslriqk vdvydegsyt csvqtqhhpk
      121 tsqvylivqv ppkisnissd itvnegsnvt lvcmangrpe pvitwrhltp tgrefegeee
      181 yleilgitre qsgkyeckaa nevasadvkq vrvtvnyppt itesksneaa tgrqallrce
      241 asavptpdfe wyrddtrins angleiksmg tqsllmvanv teehygnytc vaanklgvtn
      301 aslylykrvl ptlpnpfpgp gtgrvdngsm slavplwlla asllcllskc
//
LOCUS       XP_053929648             347 aa            linear   VRT 09-MAR-2023
DEFINITION  limbic system-associated membrane protein isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053929648
VERSION     XP_053929648.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073673.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..347
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..347
                     /product="limbic system-associated membrane protein
                     isoform X2"
                     /calculated_mol_wt=38559
     Region          35..125
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          46..50
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409382"
     Region          58..62
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409382"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409382"
     Region          105..110
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409382"
     Region          118..121
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409382"
     Region          128..198
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     Region          215..291
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     CDS             1..347
                     /gene="LSAMP"
                     /coded_by="XM_054073673.1:351..1394"
                     /db_xref="GeneID:104055800"
ORIGIN      
        1 mrtywlhsiw vlgfflslfs lqglpvrsvd ftrgtdnitv rqgdtailrc yvedrsskva
       61 wlnrsgiifa gedkwsldpr velekrnple yslriqkvdv ydegsytcsv qtqhhpktsq
      121 vylivqvppk isnissditv negsnvtlvc mangrpepvi twrhltptgr efegeeeyle
      181 ilgitreqsg kyeckaanev asadvkqvrv tvnypptite sksneaatgr qallrceasa
      241 vptpdfewyr ddtrinsang leiksmgtqs llmvanvtee hygnytcvaa nklgvtnasl
      301 ylykrvlptl pnpfpgpgtg rvdngsmsla vplwllaasl lcllskc
//
LOCUS       XP_009555275             338 aa            linear   VRT 09-MAR-2023
DEFINITION  limbic system-associated membrane protein isoform X3 [Cuculus
            canorus].
ACCESSION   XP_009555275
VERSION     XP_009555275.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556980.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..338
                     /product="limbic system-associated membrane protein
                     isoform X3"
                     /calculated_mol_wt=37411
     Region          38..128
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          49..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          61..65
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          94..98
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          108..113
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          121..124
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          131..201
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     Region          218..294
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     CDS             1..338
                     /gene="LSAMP"
                     /coded_by="XM_009556980.2:422..1438"
                     /db_xref="GeneID:104055800"
ORIGIN      
        1 mvaraqpdrk qlplvllrll cllptglpvr svdftrgtdn itvrqgdtai lrcyvedrss
       61 kvawlnrsgi ifagedkwsl dprvelekrn pleyslriqk vdvydegsyt csvqtqhhpk
      121 tsqvylivqv ppkisnissd itvnegsnvt lvcmangrpe pvitwrhltp tgrefegeee
      181 yleilgitre qsgkyeckaa nevasadvkq vrvtvnyppt itesksneaa tgrqallrce
      241 asavptpdfe wyrddtrins angleiksmg tqsllmvanv teehygnytc vaanklgvtn
      301 aslylyrpgt grvdngsmsl avplwllaas llcllskc
//
LOCUS       XP_053929681             602 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC104055856 [Cuculus canorus].
ACCESSION   XP_053929681
VERSION     XP_053929681.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073706.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..602
                     /product="uncharacterized protein LOC104055856"
                     /calculated_mol_wt=65658
     Region          141..596
                     /region_name="GatA"
                     /note="Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
                     or related amidase [Translation, ribosomal structure and
                     biogenesis]; COG0154"
                     /db_xref="CDD:439924"
     CDS             1..602
                     /gene="LOC104055856"
                     /coded_by="XM_054073706.1:106..1914"
                     /db_xref="GeneID:104055856"
ORIGIN      
        1 mwpllllllm asvapvaayl ccvrrhtgsa gtggrrrphs dpwaprlcga glrlfvrvan
       61 aafgqicllp flirlnnfsl mrsldihedp tfipevaaev tedkseakst sdiieqlidt
      121 rsdspsngfs fkgikdyldc yrsgkltpsq vakniiavle dcdkstpplr aivqwdqeqi
      181 mlmaeastar yrnkctlsyl dgipvclkee fkvvpyhhrv gtvylgtepe tedatvakkl
      241 reagaviigv snmhelgtgt tgcnpnryhk iprnpykpnh ftggsssgsa aavaaglcpv
      301 aigtdgggsv ripasfcgvv glkgtfgris ahgslplsys tvsvgpicas vadaaivysi
      361 laepdplypy glkqpkatls dmcapdlkgl klgvdwtffk acdaevlsic ekavehlqsl
      421 gasvveiplp eleemrvahv icilsemrdf lqpdfnkhfq emnletranl alasqftald
      481 yitanrqrtr smrflrdift tvnciltpgv pstapriyes dlltgssdss ftvrsmrfmq
      541 lgnftgipgi vvpigystag lpisfqvmak wwdeavllri glkleqfryq tkkpsiyydi
      601 la
//
LOCUS       XP_053929694             484 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 39A [Cuculus canorus].
ACCESSION   XP_053929694
VERSION     XP_053929694.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073719.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..484
                     /product="transmembrane protein 39A"
                     /calculated_mol_wt=55236
     Region          42..473
                     /region_name="Tmp39"
                     /note="Putative transmembrane protein; pfam10271"
                     /db_xref="CDD:463038"
     CDS             1..484
                     /gene="TMEM39A"
                     /coded_by="XM_054073719.1:345..1799"
                     /db_xref="GeneID:104055807"
ORIGIN      
        1 mpggrrgpsr qqlsrsalps lqtlvggscg ngtglrnrng saislsappi talitpepvr
       61 hcripdlpld gsllfeflff iyllvalfiq yiniyktvww ypynhpasct slnfhlidyh
      121 laafitvmla rrlvwalvse asqvgatsvi hymvrlvllt lcgwvlcwtl vnlfrshsvl
      181 nllflgypfg vyvplccfhq dsraqplpad cvylvqdqvv ddgasavssl vkpkdflsll
      241 weslreqfnn ptsipthscp lspdlirnev eclkadfnrr ikevlfnslf sayyvaflpl
      301 cfvkstqyyd mrwscehlim vwinafvmlt tqllppkycd llhrsaahlg kwqklehgsy
      361 snapqhiwse ntiwpqgvlv rrsrclykav gpynvavpsd vsharfyflf hrplrllnll
      421 iliegsvvcy qlysllrsek wnhtlsmali lfcnyyvlfk llrdrivlgr aysyplnnyg
      481 lkah
//
LOCUS       XP_009564515            1030 aa            linear   VRT 09-MAR-2023
DEFINITION  thyrotropin-releasing hormone-degrading ectoenzyme [Cuculus
            canorus].
ACCESSION   XP_009564515
VERSION     XP_009564515.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566220.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564515.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1030
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1030
                     /product="thyrotropin-releasing hormone-degrading
                     ectoenzyme"
                     /calculated_mol_wt=118291
     Region          154..599
                     /region_name="M1_APN-Q_like"
                     /note="Peptidase M1 aminopeptidase N catalytic domain
                     family which includes aminopeptidase N (APN),
                     aminopeptidase Q (APQ), tricorn interacting factor F3, and
                     endoplasmic reticulum aminopeptidase 1 (ERAP1); cd09601"
                     /db_xref="CDD:341064"
     Site            order(272,274,410..413,446..447,450,469,473,528,533)
                     /site_type="active"
                     /db_xref="CDD:341064"
     Region          684..1008
                     /region_name="ERAP1_C"
                     /note="ERAP1-like C-terminal domain; pfam11838"
                     /db_xref="CDD:463368"
     CDS             1..1030
                     /gene="TRHDE"
                     /coded_by="XM_009566220.2:136..3228"
                     /db_xref="GeneID:104063936"
ORIGIN      
        1 maleekrekr ppvtpmmiee eaalrngsrp waepagprpr tterhiavhk rlvlvfavsi
       61 lallavtmva vllsvrfeec gtaaadggng slpgaarqpp gagqppgrpe hgeeaavpae
      121 eeeegeeeee eewqrrrelp pwarprlpgh lrplhynlml svfmenftfs gevnvqlevl
      181 nasryvvlha hrmhieavrv aedklaggvq varsflypqt qvfvvvlnrs levqrsynlk
      241 iiynaliene llgffrssyv lhgerrflgv tqfspthark afpcfdepiy katfkisirh
      301 qatylslsnm pvetsvfeed gwvtdhfsqt plmstyylaw aicnftyret vtrsgvivrl
      361 yarpdairrg sgdyalnitr rliefyedyf kvpyslpkld llavpkhpya amenwglsvf
      421 veqrilldps issisylldv tmvivhelch qwfgdlvtpv wwedvwlkeg fahyfefvgt
      481 dylypgwnme kqrfltdvlq evmlldglas shpvsqevqq atdidrvfdw iaykkgaali
      541 rmlanfmghs vfqlglqdyl tihkygnaar ndlwntlska lkrvgksvni qevmdqwtlq
      601 mgypvitilg nettdnvivi sqerfvydsd akpkdpalgd nsylwqiplt iavgntshis
      661 seaiiwvsnk sehhripale eanwllgnin qtgyfrvnyd irnwrllinq ltrnhevisv
      721 snraglidda fnlaragylp qnipleiiky lseekgflpw haasralypl dklldrtesy
      781 nifneyilrq vasmylklgw ptnnlnkslv qasyqheelr revimlacsf gnkhchqqaa
      841 tlisdwissn rnriplnvrd ivyctgvslm dedvwefiwm kfhsttavse kkillealtc
      901 sddrnllnrl lnlslnsevv ldqdaidvii hvarnphgrd lawkffrekw kilnarygea
      961 lfmnsklisg vteflnteee lrelknfvks yeegsaasfs ravetvkanv rwqrlykeel
     1021 fqwlrkslah
//
LOCUS       XP_053929717             491 aa            linear   VRT 09-MAR-2023
DEFINITION  tryptophan 5-hydroxylase 2 [Cuculus canorus].
ACCESSION   XP_053929717
VERSION     XP_053929717.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073742.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..491
                     /product="tryptophan 5-hydroxylase 2"
                     /calculated_mol_wt=55926
     Region          60..486
                     /region_name="Trp_5_monoox"
                     /note="tryptophan 5-monooxygenase, tetrameric; TIGR01270"
                     /db_xref="CDD:130337"
     CDS             1..491
                     /gene="TPH2"
                     /coded_by="XM_054073742.1:30..1505"
                     /db_xref="GeneID:104064049"
ORIGIN      
        1 mqpammmfss kywarrgfsl dsafpeerpa vgshslsrpc sgkneekkgs kgngkgesis
       61 eggktavvfs lknevgglvk alrlfqekhv smvhiesrks krrnseveif vdcdctkkef
      121 neliqllkfq tnivslnppe niwtdeedld cvpwfprkis eldkcsqrvl mygseldadh
      181 pgfkdnvyrq rrkyfvdvam sykygqpipr veytaeeikt wgvvfrelsk lypthacrey
      241 lknfplltky cgyrednvpq ledvsiflke rsgftvrpva gylsprdfla glayrvfhct
      301 qyvrhgsdpl ytpepdtche llghvpllad pkfaqfsqei glaslgasde dvqklatcyf
      361 ftiefglckq egqlraygag llssigelkh alsdkanvkt fdpkttclqe clittfqeay
      421 fvsesfeeak ekmrdfaksi nrpfsvyfnp ytqsieilkd trsienvvqd lrsdlntvcd
      481 alskmnrylg i
//
LOCUS       XP_009555444            1937 aa            linear   VRT 09-MAR-2023
DEFINITION  myosin-15 [Cuculus canorus].
ACCESSION   XP_009555444
VERSION     XP_009555444.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557149.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555444.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1937
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1937
                     /product="myosin-15"
                     /calculated_mol_wt=223361
     Region          30..74
                     /region_name="Myosin_N"
                     /note="Myosin N-terminal SH3-like domain; pfam02736"
                     /db_xref="CDD:460670"
     Region          97..767
                     /region_name="Motor_domain"
                     /note="Myosin and Kinesin motor domain; cl22853"
                     /db_xref="CDD:473979"
     Site            order(124..125,176..183,233..234,461..466)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:276814"
     Region          847..1924
                     /region_name="Myosin_tail_1"
                     /note="Myosin tail; pfam01576"
                     /db_xref="CDD:460256"
     CDS             1..1937
                     /gene="MYH15"
                     /coded_by="XM_009557149.2:180..5993"
                     /db_xref="GeneID:104055956"
ORIGIN      
        1 mmdmsefgea apflrkseke lmmaqtvafd gkkkcwvpde kkayveaeit etsggkvtvq
       61 ttdgktmtik eddvqamnpp kfdmiedmam lthlneasvl ynlrkryrnw miytysglfc
      121 vtinpykwlp vyksevvaay kgkrrseapp hifsiadnay hdmlrnrenq smlitgesga
      181 gktvntkrvi qyfatvaalg epgkknqpat ktggtledqi iqanpaleaf gnaktlrndn
      241 ssrfgkfiri hfgttgklas adieiyllek srvifqqpge rdyhifyqil sgkkpelldm
      301 llvstnpydy hfcsqgvvtv dnlddgeell atdqamdilg fvpdeksgsy kltgaimhfg
      361 nmkfkqrpre eqaeadgtes adkaaylmgi nssdlikgll hprvkvgney vtkgqsveqv
      421 lyavgalska vydrmfkwlv vrinrtldtk lprqffigvl diagfeifdf nsfeqlciny
      481 tneklqqffn hhmfvleqee ykkegidwvf idfgmdlqac idliekplgi lsileeecmf
      541 pkatdmtfka klydnhlgks pnlqkprpdk krkyeahfel lhyagavpyn iigwleknkd
      601 plnetvvgif qkssnkllas lfesyigads adqggekkrk kgasfqtvss lhkenlnklm
      661 tnlrstaphf vrciipnesk tpgemdaflv lhqlrcngvl egiricrkgf pnrvlyadfk
      721 qryrilnpga ipedkfvdsr kaaekllssl dvdhnqyrfg htkvffkagl lghleemrde
      781 rlakiltmiq arargrlmri efqkiverrd allviqwnir afmavknwpw mklffkikpl
      841 lksaetekem anmkeeflkl kealeksear rkeleekqvs lvqekndlll qlqaeqdtla
      901 daeercdlli kskiqleakv keltervede eemnseltsk krkledecse lkkdiddlei
      961 tlakvekekh atenkvknlt eematldeni sklakekksl qeahqqvldd lqaeedkvnt
     1021 lskakvkleq qvddlegsle qekkvrmdle rakrklegdl kltqesvmdl endklqmeek
     1081 lkkkefemsq lnskiedeqa ivmqlqkkik elqarieele eeleaeraar akvekqrsdl
     1141 areleelser leeaggataa qlemnkkrea eflklrrdle eatlhyeata atlrkkhads
     1201 vaemgeqldn lqrvkqklek ekselkmevd dltsnmeqmv kgkanaeklc rtyedhlnet
     1261 ktkleemtrl mndlttqktk lqsengefvr qleekeslis qlsrgktsft qqieelrrql
     1321 eeetksknal ahalqaarhd cdllreqyee eqeakaelqr alskgnaeva qwrtkyetda
     1381 iqrteeleda kkklaarlqe aeeaieaana kcsslektkh rlqneledmm idlekansaa
     1441 asldkkqrgf dkiindwkqk yeesqaelea sqkearglst elfklknaye etldhletlk
     1501 renknlqeei sdltnqiseg nkslheieki kkqveqekse vqlaleeaeg aleheesktl
     1561 rfqlelsqlk adferkltek deemenirrn qqraidslqa tldsearsrn eairlkkkme
     1621 gdlnemeiql shanrhaaea tksarglqtq ikelqvqldd sghvnedlke qlavsdrrnn
     1681 llqseldelr alldqterar kvaehellea tervnllhtq ntslinqkkk legdisqmqn
     1741 eveesiqecr naeekakkai tdaammaeel kkeqdtsahl ermkknmeqt ikdlqkrlde
     1801 aeqialkggk kqiqklesrv relenelene lrrnsdaqkg arkferrike ltyqseedkk
     1861 nlarmqdlid klqlkvksyk hqaeeaeaqa nlylskyrkq qhdlddaeer aeiaesqvnk
     1921 lrsksrdigm kkvheee
//
LOCUS       XP_009555445             910 aa            linear   VRT 09-MAR-2023
DEFINITION  protein CIP2A isoform X1 [Cuculus canorus].
ACCESSION   XP_009555445
VERSION     XP_009555445.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557150.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..910
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..910
                     /product="protein CIP2A isoform X1"
                     /calculated_mol_wt=102048
     Region          <637..>885
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..910
                     /gene="CIP2A"
                     /coded_by="XM_009557150.2:81..2813"
                     /db_xref="GeneID:104055957"
ORIGIN      
        1 mdasgcmksl llaatqyraa rtppnaellq rslevisglk ltrlfasnqi lpseclsclv
       61 elledantnr sltlsvvtll sklaldndtr ealqdtcnlt svlagvvhrn stnlsdpvll
      121 qsiqllqrlt ynvpvfcaga nidelilflm hhvqstedel tipclgllan lcrhnlsiqa
      181 qikslnnvks fyrtlisfla hssltmvvfa lsvlssltln eevgeklfha rnihqtfqli
      241 fnivvngdgt ltrkysvdll mdllknpkia dyltryqhft sclgqvldll hgrdpnsssk
      301 ilelllafcs viqlrhtlrq ailepsglpv sgntrfvtcs knfepsvalv hlsnqplegs
      361 edcsvlalql fkeifedvin tgnsasaehf vdlllpvlld hlqmpeqivd ellvkkkcer
      421 mvkainvltm lcrddklkmh askvltashc tsliehqfvc sgidtgfgit vvdskmckla
      481 adiilktldl msrlkqdvpg mevsfykilq dqrlitpmtf altsdrreqv qaglgilfea
      541 ahlpdfpaiv lgesiaanna yrqqetkhas kriqmqspmt nvtsvrcsal rpssgestts
      601 niqeliqklh sglqmkepvt dmrisdimdv yeqkltalas ketrlqdlle akavalaqad
      661 klmaqyrrqr aqaeaeartl aamlkeaerk neelndllka qqveseraht dieqlfqhnr
      721 klqtvaeehe ilkkssvdll qryetterqy qdlqitcnsl nkemetmkkl neslkqqndr
      781 taaqlieten qrkelqqqlq ekdgkiatlq qkikvleekl kgqqkektdm eqtidilrke
      841 lskteqarke lsikasslev qksqlegrlg eketliklqk eelnkhsnmi amihslsggk
      901 lnadtvnltl
//
LOCUS       XP_053929753             761 aa            linear   VRT 09-MAR-2023
DEFINITION  protein CIP2A isoform X2 [Cuculus canorus].
ACCESSION   XP_053929753
VERSION     XP_053929753.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073778.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..761
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..761
                     /product="protein CIP2A isoform X2"
                     /calculated_mol_wt=85836
     Region          <488..>736
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..761
                     /gene="CIP2A"
                     /coded_by="XM_054073778.1:346..2631"
                     /db_xref="GeneID:104055957"
ORIGIN      
        1 mhhvqstede ltipclglla nlcrhnlsiq aqikslnnvk sfyrtlisfl ahssltmvvf
       61 alsvlssltl neevgeklfh arnihqtfql ifnivvngdg tltrkysvdl lmdllknpki
      121 adyltryqhf tsclgqvldl lhgrdpnsss kilelllafc sviqlrhtlr qailepsglp
      181 vsgntrfvtc sknfepsval vhlsnqpleg sedcsvlalq lfkeifedvi ntgnsasaeh
      241 fvdlllpvll dhlqmpeqiv dellvkkkce rmvkainvlt mlcrddklkm haskvltash
      301 ctsliehqfv csgidtgfgi tvvdskmckl aadiilktld lmsrlkqdvp gmevsfykil
      361 qdqrlitpmt faltsdrreq vqaglgilfe aahlpdfpai vlgesiaann ayrqqetkha
      421 skriqmqspm tnvtsvrcsa lrpssgestt sniqeliqkl hsglqmkepv tdmrisdimd
      481 vyeqkltala sketrlqdll eakavalaqa dklmaqyrrq raqaeaeart laamlkeaer
      541 kneelndllk aqqveserah tdieqlfqhn rklqtvaeeh eilkkssvdl lqryetterq
      601 yqdlqitcns lnkemetmkk lneslkqqnd rtaaqliete nqrkelqqql qekdgkiatl
      661 qqkikvleek lkgqqkektd meqtidilrk elskteqark elsikassle vqksqlegrl
      721 geketliklq keelnkhsnm iamihslsgg klnadtvnlt l
//
LOCUS       XP_053929764             389 aa            linear   VRT 09-MAR-2023
DEFINITION  intraflagellar transport protein 57 homolog isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053929764
VERSION     XP_053929764.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073789.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..389
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..389
                     /product="intraflagellar transport protein 57 homolog
                     isoform X1"
                     /calculated_mol_wt=44866
     Region          5..361
                     /region_name="IFT57"
                     /note="Intra-flagellar transport protein 57; pfam10498"
                     /db_xref="CDD:463118"
     CDS             1..389
                     /gene="IFT57"
                     /coded_by="XM_054073789.1:54..1223"
                     /db_xref="GeneID:104055998"
ORIGIN      
        1 mfvlmedlld klkqlsyeee alrrhnmrpl srhyfalptn pgeqffmfct laawlitkag
       61 hrfeqpqeyd dpnaiisnvl selrsfgrpv dfppsklkag ygeqacyvld claeealknt
      121 vsswkrpvyp teereeeiie ddaelmlnkm eenvvgeesd neenfidlnv lkaqtyrsdl
      181 nesarqeeil qsttdaaewn levervlpql kvtiktdnkd wrihldqmhq hkdgiesflk
      241 etrgyldklh neisrtmeki nsrekyinnq lehlvqeycs aqallseake kyqegsggvt
      301 qrikmlseit evlervkqet eekgssmtdg aplvkikqal tklkqetiqm diqigvmeht
      361 llqsklteks nmtrdmhaam ipeatvgvy
//
LOCUS       XP_053929771             353 aa            linear   VRT 09-MAR-2023
DEFINITION  intraflagellar transport protein 57 homolog isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053929771
VERSION     XP_053929771.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073796.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..353
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..353
                     /product="intraflagellar transport protein 57 homolog
                     isoform X2"
                     /calculated_mol_wt=40441
     Region          1..315
                     /region_name="IFT57"
                     /note="Intra-flagellar transport protein 57; pfam10498"
                     /db_xref="CDD:463118"
     CDS             1..353
                     /gene="IFT57"
                     /coded_by="XM_054073796.1:182..1243"
                     /db_xref="GeneID:104055998"
ORIGIN      
        1 mfctlaawli tkaghrfeqp qeyddpnaii snvlselrsf grpvdfppsk lkagygeqac
       61 yvldclaeea lkntvsswkr pvypteeree eiieddaelm lnkmeenvvg eesdneenfi
      121 dlnvlkaqty rsdlnesarq eeilqsttda aewnleverv lpqlkvtikt dnkdwrihld
      181 qmhqhkdgie sflketrgyl dklhneisrt mekinsreky innqlehlvq eycsaqalls
      241 eakekyqegs ggvtqrikml seitevlerv kqeteekgss mtdgaplvki kqaltklkqe
      301 tiqmdiqigv mehtllqskl teksnmtrdm haamipeati fttslfiict lya
//
LOCUS       XP_053929786             344 aa            linear   VRT 09-MAR-2023
DEFINITION  HERV-H LTR-associating protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053929786
VERSION     XP_053929786.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073811.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..344
                     /product="HERV-H LTR-associating protein 2 isoform X1"
                     /calculated_mol_wt=39202
     Region          10..108
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          18..22
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409512"
     Region          31..35
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409512"
     Region          74..78
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409512"
     Region          88..93
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409512"
     Region          102..105
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409512"
     Region          198..289
                     /region_name="V-set"
                     /note="Immunoglobulin V-set domain; pfam07686"
                     /db_xref="CDD:462230"
     CDS             1..344
                     /gene="HHLA2"
                     /coded_by="XM_054073811.1:1314..2348"
                     /db_xref="GeneID:104055996"
ORIGIN      
        1 mngfreqetv tglfskdcil pcafppgdde viywkkgkkh ihsyyyqrdq lqdqdpdyre
       61 rthlfhenvp ggnaslklsn ltindegsys cyvgtqqmkt evevtlhvkv spccaleyqk
      121 tdtermlkcc afltypaphi swvrgstsiq etnrheikeg ilysfrseqn iistadpyyc
      181 hihlghdewa aewkiqdels nvegssiavp ceysnntant egfgvvwiln rnavisvlas
      241 fygtshsyqp rvqinendfs lmlrdltand sgeylcnist hkytkltvrt lqvknsdniw
      301 kivpaviipv llvlvvlvaw flikirtiim gfifkgtiki ksrp
//
LOCUS       XP_053929796             339 aa            linear   VRT 09-MAR-2023
DEFINITION  HERV-H LTR-associating protein 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053929796
VERSION     XP_053929796.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073821.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..339
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..339
                     /product="HERV-H LTR-associating protein 2 isoform X2"
                     /calculated_mol_wt=38693
     Region          10..108
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          18..22
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409512"
     Region          31..35
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409512"
     Region          74..78
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409512"
     Region          88..93
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409512"
     Region          102..105
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409512"
     Region          198..289
                     /region_name="V-set"
                     /note="Immunoglobulin V-set domain; pfam07686"
                     /db_xref="CDD:462230"
     CDS             1..339
                     /gene="HHLA2"
                     /coded_by="XM_054073821.1:1315..2334"
                     /db_xref="GeneID:104055996"
ORIGIN      
        1 mngfreqetv tglfskdcil pcafppgdde viywkkgkkh ihsyyyqrdq lqdqdpdyre
       61 rthlfhenvp ggnaslklsn ltindegsys cyvgtqqmkt evevtlhvkv spccaleyqk
      121 tdtermlkcc afltypaphi swvrgstsiq etnrheikeg ilysfrseqn iistadpyyc
      181 hihlghdewa aewkiqdels nvegssiavp ceysnntant egfgvvwiln rnavisvlas
      241 fygtshsyqp rvqinendfs lmlrdltand sgeylcnist hkytkltvrt lqvknsdniw
      301 kivpaviipv llvlvvlvaw flikirtiim gfifkdqkt
//
LOCUS       XP_053929805             317 aa            linear   VRT 09-MAR-2023
DEFINITION  HERV-H LTR-associating protein 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053929805
VERSION     XP_053929805.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073830.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..317
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..317
                     /product="HERV-H LTR-associating protein 2 isoform X3"
                     /calculated_mol_wt=36105
     Region          10..108
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          18..22
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409512"
     Region          31..35
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409512"
     Region          74..78
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409512"
     Region          88..93
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409512"
     Region          102..105
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409512"
     Region          171..262
                     /region_name="V-set"
                     /note="Immunoglobulin V-set domain; pfam07686"
                     /db_xref="CDD:462230"
     CDS             1..317
                     /gene="HHLA2"
                     /coded_by="XM_054073830.1:1349..2302"
                     /db_xref="GeneID:104055996"
ORIGIN      
        1 mngfreqetv tglfskdcil pcafppgdde viywkkgkkh ihsyyyqrdq lqdqdpdyre
       61 rthlfhenvp ggnaslklsn ltindegsys cyvgtqqmkt evevtlhvka phiswvrgst
      121 siqetnrhei kegilysfrs eqniistadp yychihlghd ewaaewkiqd elsnvegssi
      181 avpceysnnt antegfgvvw ilnrnavisv lasfygtshs yqprvqinen dfslmlrdlt
      241 andsgeylcn isthkytklt vrtlqvknsd niwkivpavi ipvllvlvvl vawflikirt
      301 iimgfifkgt ikiksrp
//
LOCUS       XP_053929814             272 aa            linear   VRT 09-MAR-2023
DEFINITION  HERV-H LTR-associating protein 2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053929814
VERSION     XP_053929814.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073839.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..272
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..272
                     /product="HERV-H LTR-associating protein 2 isoform X4"
                     /calculated_mol_wt=31053
     Region          10..108
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          18..22
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409512"
     Region          31..35
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409512"
     Region          74..78
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409512"
     Region          88..93
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409512"
     Region          102..105
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409512"
     CDS             1..272
                     /gene="HHLA2"
                     /coded_by="XM_054073839.1:1352..2170"
                     /db_xref="GeneID:104055996"
ORIGIN      
        1 mngfreqetv tglfskdcil pcafppgdde viywkkgkkh ihsyyyqrdq lqdqdpdyre
       61 rthlfhenvp ggnaslklsn ltindegsys cyvgtqqmkt evevtlhvkv spccaleyqk
      121 tdtermlkcc afltypaphi swvrgstsiq etnrheikeg ilysfrseqn iistadpyyc
      181 hihlghdewa aewkiqdels nvegssiavp ceysnntant eensdniwki vpaviipvll
      241 vlvvlvawfl ikirtiimgf ifkgtikiks rp
//
LOCUS       XP_053929823             645 aa            linear   VRT 09-MAR-2023
DEFINITION  immunoglobulin-like domain-containing receptor 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053929823
VERSION     XP_053929823.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073848.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..645
                     /product="immunoglobulin-like domain-containing receptor 2
                     isoform X1"
                     /calculated_mol_wt=72366
     Region          36..166
                     /region_name="V-set"
                     /note="Immunoglobulin V-set domain; pfam07686"
                     /db_xref="CDD:462230"
     Region          186..>212
                     /region_name="LSR"
                     /note="Lipolysis stimulated receptor (LSR); pfam05624"
                     /db_xref="CDD:428550"
     CDS             1..645
                     /gene="ILDR2"
                     /coded_by="XM_054073848.1:221..2158"
                     /db_xref="GeneID:104055980"
ORIGIN      
        1 mdghllgwiv llwlaaeveg lqvtvpekkk vamlfqpall rchfstsstq pavvqwryks
       61 ycqdrmgeal gmvtsglqtm skrnldwdpy ldcvdsrrtv rvvaskqgsa vtigdfyker
      121 dvsivhdadl qigklmwgds glyycliitp ddvegknees vellvlgrtg lladllpsfa
      181 veimpewvfv glvilgaflf fllvgicwcq ccphscccyv rcpccpescc cpralyvagk
      241 aakagyppav ssmpgpyyip svpvtgvpsp avlmdkshpp plapsdasgg sqnavrkgyr
      301 iqtdkerdsm kvlyyvekel aqfdparrmr erynntisel sslheddlnf rqpyrqmrrk
      361 plppagdldg daeywagvms ggstsrsqaa sdyrderdsf rhsqqrskse mlsrksfsvg
      421 vpavsmdela afaesysqrt rradsqetrr ferseshggr igglphqdss mdeyytkhsr
      481 gnrepltdsd rgwsyspprr raheekhlpr lvsrtpggsq kydhsylssv lerksrsyde
      541 ngdhsetptk lssqpsqrgg gtyyawspps tykaeksqqq pqqpptsseq eeeedtlppy
      601 serelsrgps yrareqayln asdkkrkkdp kktvrpcllv liqtg
//
LOCUS       XP_053929828             644 aa            linear   VRT 09-MAR-2023
DEFINITION  immunoglobulin-like domain-containing receptor 2 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053929828
VERSION     XP_053929828.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073853.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..644
                     /product="immunoglobulin-like domain-containing receptor 2
                     isoform X2"
                     /calculated_mol_wt=72333
     Region          36..166
                     /region_name="V-set"
                     /note="Immunoglobulin V-set domain; pfam07686"
                     /db_xref="CDD:462230"
     Region          186..>212
                     /region_name="LSR"
                     /note="Lipolysis stimulated receptor (LSR); pfam05624"
                     /db_xref="CDD:428550"
     CDS             1..644
                     /gene="ILDR2"
                     /coded_by="XM_054073853.1:211..2145"
                     /db_xref="GeneID:104055980"
ORIGIN      
        1 mdghllgwiv llwlaaeveg lqvtvpekkk vamlfqpall rchfstsstq pavvqwryks
       61 ycqdrmgeal gmvtsglqtm skrnldwdpy ldcvdsrrtv rvvaskqgsa vtigdfyker
      121 dvsivhdadl qigklmwgds glyycliitp ddvegknees vellvlgrtg lladllpsfa
      181 veimpewvfv glvilgaflf fllvgicwcq ccphscccyv rcpccpescc cpralyvagk
      241 aakagyppav ssmpgpyyip svpvtgvpsp avlmdkshpp plapsdasgg sqnavrkgyr
      301 iqtdkerdsm kvlyyvekel aqfdparrmr erynntisel sslheddlnf rqpyrqmrrk
      361 plppagdldg daeywagvms ggstsrsqaa sdyrderdsf rhsqqrskse mlsrksfsvg
      421 vpavsmdela afaesysqrt rradsqetrr ferseshggr igglphqdss mdeyytkhsr
      481 gnrepltdsd rgwsyspprr raheekhlpr lvsrtpggsq kydhsylssv lerksrsyde
      541 ngdhsetptk lssqpsqrgg gtyyawspps tykaeksqqq pqqpptsseq eeeedtlppy
      601 serelsrgps yrareqayln asdkkrkkdp kktndfptrm slvv
//
LOCUS       XP_053929829             643 aa            linear   VRT 09-MAR-2023
DEFINITION  immunoglobulin-like domain-containing receptor 2 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053929829
VERSION     XP_053929829.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073854.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..643
                     /product="immunoglobulin-like domain-containing receptor 2
                     isoform X3"
                     /calculated_mol_wt=72262
     Region          36..166
                     /region_name="V-set"
                     /note="Immunoglobulin V-set domain; pfam07686"
                     /db_xref="CDD:462230"
     Region          186..>212
                     /region_name="LSR"
                     /note="Lipolysis stimulated receptor (LSR); pfam05624"
                     /db_xref="CDD:428550"
     CDS             1..643
                     /gene="ILDR2"
                     /coded_by="XM_054073854.1:215..2146"
                     /db_xref="GeneID:104055980"
ORIGIN      
        1 mdghllgwiv llwlaaeveg lqvtvpekkk vamlfqpall rchfstsstq pavvqwryks
       61 ycqdrmgeal gmvtsglqtm skrnldwdpy ldcvdsrrtv rvvaskqgsa vtigdfyker
      121 dvsivhdadl qigklmwgds glyycliitp ddvegknees vellvlgrtg lladllpsfa
      181 veimpewvfv glvilgaflf fllvgicwcq ccphscccyv rcpccpescc cpralyvagk
      241 aakagyppav ssmpgpyyip svpvtgvpsp avlmdkshpp plapsdasgg sqnvrkgyri
      301 qtdkerdsmk vlyyvekela qfdparrmre rynntisels slheddlnfr qpyrqmrrkp
      361 lppagdldgd aeywagvmsg gstsrsqaas dyrderdsfr hsqqrsksem lsrksfsvgv
      421 pavsmdelaa faesysqrtr radsqetrrf erseshggri gglphqdssm deyytkhsrg
      481 nrepltdsdr gwsyspprrr aheekhlprl vsrtpggsqk ydhsylssvl erksrsyden
      541 gdhsetptkl ssqpsqrggg tyyawsppst ykaeksqqqp qqpptsseqe eeedtlppys
      601 erelsrgpsy rareqaylna sdkkrkkdpk ktndfptrms lvv
//
LOCUS       XP_053929830             625 aa            linear   VRT 09-MAR-2023
DEFINITION  immunoglobulin-like domain-containing receptor 2 isoform X4
            [Cuculus canorus].
ACCESSION   XP_053929830
VERSION     XP_053929830.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073855.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..625
                     /product="immunoglobulin-like domain-containing receptor 2
                     isoform X4"
                     /calculated_mol_wt=70350
     Region          36..166
                     /region_name="V-set"
                     /note="Immunoglobulin V-set domain; pfam07686"
                     /db_xref="CDD:462230"
     Region          167..>193
                     /region_name="LSR"
                     /note="Lipolysis stimulated receptor (LSR); pfam05624"
                     /db_xref="CDD:428550"
     CDS             1..625
                     /gene="ILDR2"
                     /coded_by="XM_054073855.1:207..2084"
                     /db_xref="GeneID:104055980"
ORIGIN      
        1 mdghllgwiv llwlaaeveg lqvtvpekkk vamlfqpall rchfstsstq pavvqwryks
       61 ycqdrmgeal gmvtsglqtm skrnldwdpy ldcvdsrrtv rvvaskqgsa vtigdfyker
      121 dvsivhdadl qigklmwgds glyycliitp ddvegknees vellvlewvf vglvilgafl
      181 ffllvgicwc qccphscccy vrcpccpesc ccpralyvag kaakagyppa vssmpgpyyi
      241 psvpvtgvps pavlmdkshp pplapsdasg gsqnavrkgy riqtdkerds mkvlyyveke
      301 laqfdparrm rerynntise lsslheddln frqpyrqmrr kplppagdld gdaeywagvm
      361 sggstsrsqa asdyrderds frhsqqrsks emlsrksfsv gvpavsmdel aafaesysqr
      421 trradsqetr rferseshgg rigglphqds smdeyytkhs rgnrepltds drgwsysppr
      481 rraheekhlp rlvsrtpggs qkydhsylss vlerksrsyd engdhsetpt klssqpsqrg
      541 ggtyyawspp stykaeksqq qpqqpptsse qeeeedtlpp yserelsrgp syrareqayl
      601 nasdkkrkkd pkktndfptr mslvv
//
LOCUS       XP_053929839             624 aa            linear   VRT 09-MAR-2023
DEFINITION  immunoglobulin-like domain-containing receptor 2 isoform X5
            [Cuculus canorus].
ACCESSION   XP_053929839
VERSION     XP_053929839.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073864.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..624
                     /product="immunoglobulin-like domain-containing receptor 2
                     isoform X5"
                     /calculated_mol_wt=70279
     Region          36..166
                     /region_name="V-set"
                     /note="Immunoglobulin V-set domain; pfam07686"
                     /db_xref="CDD:462230"
     Region          167..>193
                     /region_name="LSR"
                     /note="Lipolysis stimulated receptor (LSR); pfam05624"
                     /db_xref="CDD:428550"
     CDS             1..624
                     /gene="ILDR2"
                     /coded_by="XM_054073864.1:210..2084"
                     /db_xref="GeneID:104055980"
ORIGIN      
        1 mdghllgwiv llwlaaeveg lqvtvpekkk vamlfqpall rchfstsstq pavvqwryks
       61 ycqdrmgeal gmvtsglqtm skrnldwdpy ldcvdsrrtv rvvaskqgsa vtigdfyker
      121 dvsivhdadl qigklmwgds glyycliitp ddvegknees vellvlewvf vglvilgafl
      181 ffllvgicwc qccphscccy vrcpccpesc ccpralyvag kaakagyppa vssmpgpyyi
      241 psvpvtgvps pavlmdkshp pplapsdasg gsqnvrkgyr iqtdkerdsm kvlyyvekel
      301 aqfdparrmr erynntisel sslheddlnf rqpyrqmrrk plppagdldg daeywagvms
      361 ggstsrsqaa sdyrderdsf rhsqqrskse mlsrksfsvg vpavsmdela afaesysqrt
      421 rradsqetrr ferseshggr igglphqdss mdeyytkhsr gnrepltdsd rgwsyspprr
      481 raheekhlpr lvsrtpggsq kydhsylssv lerksrsyde ngdhsetptk lssqpsqrgg
      541 gtyyawspps tykaeksqqq pqqpptsseq eeeedtlppy serelsrgps yrareqayln
      601 asdkkrkkdp kktndfptrm slvv
//
LOCUS       XP_053929847            1111 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-tubulin complex component 5 isoform X1 [Cuculus canorus].
ACCESSION   XP_053929847
VERSION     XP_053929847.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073872.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1111
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1111
                     /product="gamma-tubulin complex component 5 isoform X1"
                     /calculated_mol_wt=127549
     Region          54..157
                     /region_name="GCP5_NTD"
                     /note="N-terminal domain of gamma-tubulin complex
                     component 5 (GCP-5) and similar proteins; cd22572"
                     /db_xref="CDD:439339"
     Site            order(57,60..61,65..66,83,86..87,90..91,93..97,99..101,
                     119,127,131,134,137..138,156..157)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:439339"
     Region          358..668
                     /region_name="GCP_N_terminal"
                     /note="Gamma tubulin complex component N-terminal;
                     pfam17681"
                     /db_xref="CDD:465456"
     Region          803..1104
                     /region_name="GCP_C_terminal"
                     /note="Gamma tubulin complex component C-terminal;
                     pfam04130"
                     /db_xref="CDD:461187"
     CDS             1..1111
                     /gene="TUBGCP5"
                     /coded_by="XM_054073872.1:16..3351"
                     /db_xref="GeneID:104066348"
ORIGIN      
        1 mksreiccgg cpggelsrdl rslpfpsgtv pssaamaaqa laspghrsrf eqeldravra
       61 lvhrvtglae eeddeeeelg ggrfqmalnf awsnfrfhrf ldvnshkvqr tiegiheklv
      121 vhsdlgkaas wkrltekfln splpsieetk tdthyailsl llclsdspsn ttyveerrvk
      181 evdsflndlc tfprrcfect fspfqeceye evisnstnyk keeefdwgky lmegeeiyfg
      241 pgidtpdwsg eseeeedtqp lsredsgiqv drtpledqdp nkktvpnvsw kgrigepdar
      301 swleqhvvpq ywtgraprfs hslhlhsnla avwdhhlyts dplyvpeert lvtetqvire
      361 tlwllsgvkk lfifqlndgk vavrnditvt hlthnclrsv leqiaaygqv vfrlqkfide
      421 vmghspesim hgtvstpkkt teapfrtyqa fmwalykyfi sfkeelteie kciinkdktv
      481 tlsivvdkls prlaqlkvlh kvfstgvaev ppdtrnvvra shllntlyka ileydsvgea
      541 seqtvsllfs lwvetvrpyl qtvdewivhg nlfdpakefi iqrnknvpvn hrdfwyatyt
      601 lysvsekten eekmsdnasa ssgsdqapss rqhtmvsflk pvlkqiimag ksmqllknlq
      661 ckdgspqqaa srdaerksly tlflesvqsr lrhgeesvpd iiteqqatkq slikmqsiae
      721 rhlelddvhd allainfarl yleqsdyhek ftggdvcvdr ssesvtcqtf eltlrsclyp
      781 hidkqylecc gnlmktlkkd yrlveylqam rnfflleagd tmydfytsif dkireketwq
      841 nvaflnvqlq eavgqryped ssrlsisfes vdtakkklpv htldgltlsy kvpwpvdivi
      901 slecqkiynq vfllllqikw akysldvlrf delvcaaenp qvkegtlleq gmlplfgpqt
      961 enikqqihrm fllrvklmhf vnslhnyimt rilhstglef qhqvedakdl dqlikihyry
     1021 lstihdrcll rekvsfvkea imkvlnlvlm fadrwqaglg awkmesmekm esdfknchmf
     1081 lvtvlnkavc rgsfphlesl alslmagmeq s
//
LOCUS       XP_053929855            1109 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-tubulin complex component 5 isoform X2 [Cuculus canorus].
ACCESSION   XP_053929855
VERSION     XP_053929855.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073880.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1109
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1109
                     /product="gamma-tubulin complex component 5 isoform X2"
                     /calculated_mol_wt=127322
     Region          54..157
                     /region_name="GCP5_NTD"
                     /note="N-terminal domain of gamma-tubulin complex
                     component 5 (GCP-5) and similar proteins; cd22572"
                     /db_xref="CDD:439339"
     Site            order(57,60..61,65..66,83,86..87,90..91,93..97,99..101,
                     119,127,131,134,137..138,156..157)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:439339"
     Region          356..666
                     /region_name="GCP_N_terminal"
                     /note="Gamma tubulin complex component N-terminal;
                     pfam17681"
                     /db_xref="CDD:465456"
     Region          801..1102
                     /region_name="GCP_C_terminal"
                     /note="Gamma tubulin complex component C-terminal;
                     pfam04130"
                     /db_xref="CDD:461187"
     CDS             1..1109
                     /gene="TUBGCP5"
                     /coded_by="XM_054073880.1:16..3345"
                     /db_xref="GeneID:104066348"
ORIGIN      
        1 mksreiccgg cpggelsrdl rslpfpsgtv pssaamaaqa laspghrsrf eqeldravra
       61 lvhrvtglae eeddeeeelg ggrfqmalnf awsnfrfhrf ldvnshkvqr tiegiheklv
      121 vhsdlgkaas wkrltekfln splpsieetk tdthyailsl llclsdspsn ttyveerrvk
      181 evdsflndlc tfprrcfect fspfqeceye evisnstnyk keeefdwgky lmegeeiyfg
      241 pgidtpdwsg eseeeedtqp lsredsgiqv drtpledqdp nkktvpnvsw kvgepdarsw
      301 leqhvvpqyw tgraprfshs lhlhsnlaav wdhhlytsdp lyvpeertlv tetqviretl
      361 wllsgvkklf ifqlndgkva vrnditvthl thnclrsvle qiaaygqvvf rlqkfidevm
      421 ghspesimhg tvstpkktte apfrtyqafm walykyfisf keelteiekc iinkdktvtl
      481 sivvdklspr laqlkvlhkv fstgvaevpp dtrnvvrash llntlykail eydsvgease
      541 qtvsllfslw vetvrpylqt vdewivhgnl fdpakefiiq rnknvpvnhr dfwyatytly
      601 svsektenee kmsdnasass gsdqapssrq htmvsflkpv lkqiimagks mqllknlqck
      661 dgspqqaasr daerkslytl flesvqsrlr hgeesvpdii teqqatkqsl ikmqsiaerh
      721 lelddvhdal lainfarlyl eqsdyhekft ggdvcvdrss esvtcqtfel tlrsclyphi
      781 dkqyleccgn lmktlkkdyr lveylqamrn fflleagdtm ydfytsifdk ireketwqnv
      841 aflnvqlqea vgqrypedss rlsisfesvd takkklpvht ldgltlsykv pwpvdivisl
      901 ecqkiynqvf llllqikwak ysldvlrfde lvcaaenpqv kegtlleqgm lplfgpqten
      961 ikqqihrmfl lrvklmhfvn slhnyimtri lhstglefqh qvedakdldq likihyryls
     1021 tihdrcllre kvsfvkeaim kvlnlvlmfa drwqaglgaw kmesmekmes dfknchmflv
     1081 tvlnkavcrg sfphleslal slmagmeqs
//
LOCUS       XP_053929862            1074 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-tubulin complex component 5 isoform X3 [Cuculus canorus].
ACCESSION   XP_053929862
VERSION     XP_053929862.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073887.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1074
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1074
                     /product="gamma-tubulin complex component 5 isoform X3"
                     /calculated_mol_wt=123132
     Region          54..157
                     /region_name="GCP5_NTD"
                     /note="N-terminal domain of gamma-tubulin complex
                     component 5 (GCP-5) and similar proteins; cd22572"
                     /db_xref="CDD:439339"
     Site            order(57,60..61,65..66,83,86..87,90..91,93..97,99..101,
                     119,127,131,134,137..138,156..157)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:439339"
     Region          321..631
                     /region_name="GCP_N_terminal"
                     /note="Gamma tubulin complex component N-terminal;
                     pfam17681"
                     /db_xref="CDD:465456"
     Region          766..1067
                     /region_name="GCP_C_terminal"
                     /note="Gamma tubulin complex component C-terminal;
                     pfam04130"
                     /db_xref="CDD:461187"
     CDS             1..1074
                     /gene="TUBGCP5"
                     /coded_by="XM_054073887.1:16..3240"
                     /db_xref="GeneID:104066348"
ORIGIN      
        1 mksreiccgg cpggelsrdl rslpfpsgtv pssaamaaqa laspghrsrf eqeldravra
       61 lvhrvtglae eeddeeeelg ggrfqmalnf awsnfrfhrf ldvnshkvqr tiegiheklv
      121 vhsdlgkaas wkrltekfln splpsieetk tdthyailsl llclsdspsn ttyveerrvk
      181 evekeeefdw gkylmegeei yfgpgidtpd wsgeseeeed tqplsredsg iqvdrtpled
      241 qdpnkktvpn vswkgrigep darswleqhv vpqywtgrap rfshslhlhs nlaavwdhhl
      301 ytsdplyvpe ertlvtetqv iretlwllsg vkklfifqln dgkvavrndi tvthlthncl
      361 rsvleqiaay gqvvfrlqkf idevmghspe simhgtvstp kktteapfrt yqafmwalyk
      421 yfisfkeelt eiekciinkd ktvtlsivvd klsprlaqlk vlhkvfstgv aevppdtrnv
      481 vrashllntl ykaileydsv geaseqtvsl lfslwvetvr pylqtvdewi vhgnlfdpak
      541 efiiqrnknv pvnhrdfwya tytlysvsek teneekmsdn asassgsdqa pssrqhtmvs
      601 flkpvlkqii magksmqllk nlqckdgspq qaasrdaerk slytlflesv qsrlrhgees
      661 vpdiiteqqa tkqslikmqs iaerhleldd vhdallainf arlyleqsdy hekftggdvc
      721 vdrssesvtc qtfeltlrsc lyphidkqyl eccgnlmktl kkdyrlveyl qamrnfflle
      781 agdtmydfyt sifdkireke twqnvaflnv qlqeavgqry pedssrlsis fesvdtakkk
      841 lpvhtldglt lsykvpwpvd ivislecqki ynqvfllllq ikwakysldv lrfdelvcaa
      901 enpqvkegtl leqgmlplfg pqtenikqqi hrmfllrvkl mhfvnslhny imtrilhstg
      961 lefqhqveda kdldqlikih yrylstihdr cllrekvsfv keaimkvlnl vlmfadrwqa
     1021 glgawkmesm ekmesdfknc hmflvtvlnk avcrgsfphl eslalslmag meqs
//
LOCUS       XP_053929873            1072 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-tubulin complex component 5 isoform X4 [Cuculus canorus].
ACCESSION   XP_053929873
VERSION     XP_053929873.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073898.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1072
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1072
                     /product="gamma-tubulin complex component 5 isoform X4"
                     /calculated_mol_wt=122905
     Region          54..157
                     /region_name="GCP5_NTD"
                     /note="N-terminal domain of gamma-tubulin complex
                     component 5 (GCP-5) and similar proteins; cd22572"
                     /db_xref="CDD:439339"
     Site            order(57,60..61,65..66,83,86..87,90..91,93..97,99..101,
                     119,127,131,134,137..138,156..157)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:439339"
     Region          319..629
                     /region_name="GCP_N_terminal"
                     /note="Gamma tubulin complex component N-terminal;
                     pfam17681"
                     /db_xref="CDD:465456"
     Region          764..1065
                     /region_name="GCP_C_terminal"
                     /note="Gamma tubulin complex component C-terminal;
                     pfam04130"
                     /db_xref="CDD:461187"
     CDS             1..1072
                     /gene="TUBGCP5"
                     /coded_by="XM_054073898.1:16..3234"
                     /db_xref="GeneID:104066348"
ORIGIN      
        1 mksreiccgg cpggelsrdl rslpfpsgtv pssaamaaqa laspghrsrf eqeldravra
       61 lvhrvtglae eeddeeeelg ggrfqmalnf awsnfrfhrf ldvnshkvqr tiegiheklv
      121 vhsdlgkaas wkrltekfln splpsieetk tdthyailsl llclsdspsn ttyveerrvk
      181 evekeeefdw gkylmegeei yfgpgidtpd wsgeseeeed tqplsredsg iqvdrtpled
      241 qdpnkktvpn vswkvgepda rswleqhvvp qywtgraprf shslhlhsnl aavwdhhlyt
      301 sdplyvpeer tlvtetqvir etlwllsgvk klfifqlndg kvavrnditv thlthnclrs
      361 vleqiaaygq vvfrlqkfid evmghspesi mhgtvstpkk tteapfrtyq afmwalykyf
      421 isfkeeltei ekciinkdkt vtlsivvdkl sprlaqlkvl hkvfstgvae vppdtrnvvr
      481 ashllntlyk aileydsvge aseqtvsllf slwvetvrpy lqtvdewivh gnlfdpakef
      541 iiqrnknvpv nhrdfwyaty tlysvsekte neekmsdnas assgsdqaps srqhtmvsfl
      601 kpvlkqiima gksmqllknl qckdgspqqa asrdaerksl ytlflesvqs rlrhgeesvp
      661 diiteqqatk qslikmqsia erhlelddvh dallainfar lyleqsdyhe kftggdvcvd
      721 rssesvtcqt feltlrscly phidkqylec cgnlmktlkk dyrlveylqa mrnfflleag
      781 dtmydfytsi fdkireketw qnvaflnvql qeavgqrype dssrlsisfe svdtakkklp
      841 vhtldgltls ykvpwpvdiv islecqkiyn qvfllllqik wakysldvlr fdelvcaaen
      901 pqvkegtlle qgmlplfgpq tenikqqihr mfllrvklmh fvnslhnyim trilhstgle
      961 fqhqvedakd ldqlikihyr ylstihdrcl lrekvsfvke aimkvlnlvl mfadrwqagl
     1021 gawkmesmek mesdfknchm flvtvlnkav crgsfphles lalslmagme qs
//
LOCUS       XP_053929884             880 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-tubulin complex component 5 isoform X5 [Cuculus canorus].
ACCESSION   XP_053929884
VERSION     XP_053929884.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073909.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..880
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..880
                     /product="gamma-tubulin complex component 5 isoform X5"
                     /calculated_mol_wt=101256
     Region          127..437
                     /region_name="GCP_N_terminal"
                     /note="Gamma tubulin complex component N-terminal;
                     pfam17681"
                     /db_xref="CDD:465456"
     Region          572..873
                     /region_name="GCP_C_terminal"
                     /note="Gamma tubulin complex component C-terminal;
                     pfam04130"
                     /db_xref="CDD:461187"
     CDS             1..880
                     /gene="TUBGCP5"
                     /coded_by="XM_054073909.1:246..2888"
                     /db_xref="GeneID:104066348"
ORIGIN      
        1 megeeiyfgp gidtpdwsge seeeedtqpl sredsgiqvd rtpledqdpn kktvpnvswk
       61 grigepdars wleqhvvpqy wtgraprfsh slhlhsnlaa vwdhhlytsd plyvpeertl
      121 vtetqviret lwllsgvkkl fifqlndgkv avrnditvth lthnclrsvl eqiaaygqvv
      181 frlqkfidev mghspesimh gtvstpkktt eapfrtyqaf mwalykyfis fkeelteiek
      241 ciinkdktvt lsivvdklsp rlaqlkvlhk vfstgvaevp pdtrnvvras hllntlykai
      301 leydsvgeas eqtvsllfsl wvetvrpylq tvdewivhgn lfdpakefii qrnknvpvnh
      361 rdfwyatytl ysvsektene ekmsdnasas sgsdqapssr qhtmvsflkp vlkqiimagk
      421 smqllknlqc kdgspqqaas rdaerkslyt lflesvqsrl rhgeesvpdi iteqqatkqs
      481 likmqsiaer hlelddvhda llainfarly leqsdyhekf tggdvcvdrs sesvtcqtfe
      541 ltlrsclyph idkqyleccg nlmktlkkdy rlveylqamr nfflleagdt mydfytsifd
      601 kireketwqn vaflnvqlqe avgqrypeds srlsisfesv dtakkklpvh tldgltlsyk
      661 vpwpvdivis lecqkiynqv fllllqikwa kysldvlrfd elvcaaenpq vkegtlleqg
      721 mlplfgpqte nikqqihrmf llrvklmhfv nslhnyimtr ilhstglefq hqvedakdld
      781 qlikihyryl stihdrcllr ekvsfvkeai mkvlnlvlmf adrwqaglga wkmesmekme
      841 sdfknchmfl vtvlnkavcr gsfphlesla lslmagmeqs
//
LOCUS       XP_053929892             880 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-tubulin complex component 5 isoform X5 [Cuculus canorus].
ACCESSION   XP_053929892
VERSION     XP_053929892.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073917.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..880
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..880
                     /product="gamma-tubulin complex component 5 isoform X5"
                     /calculated_mol_wt=101256
     Region          127..437
                     /region_name="GCP_N_terminal"
                     /note="Gamma tubulin complex component N-terminal;
                     pfam17681"
                     /db_xref="CDD:465456"
     Region          572..873
                     /region_name="GCP_C_terminal"
                     /note="Gamma tubulin complex component C-terminal;
                     pfam04130"
                     /db_xref="CDD:461187"
     CDS             1..880
                     /gene="TUBGCP5"
                     /coded_by="XM_054073917.1:2166..4808"
                     /db_xref="GeneID:104066348"
ORIGIN      
        1 megeeiyfgp gidtpdwsge seeeedtqpl sredsgiqvd rtpledqdpn kktvpnvswk
       61 grigepdars wleqhvvpqy wtgraprfsh slhlhsnlaa vwdhhlytsd plyvpeertl
      121 vtetqviret lwllsgvkkl fifqlndgkv avrnditvth lthnclrsvl eqiaaygqvv
      181 frlqkfidev mghspesimh gtvstpkktt eapfrtyqaf mwalykyfis fkeelteiek
      241 ciinkdktvt lsivvdklsp rlaqlkvlhk vfstgvaevp pdtrnvvras hllntlykai
      301 leydsvgeas eqtvsllfsl wvetvrpylq tvdewivhgn lfdpakefii qrnknvpvnh
      361 rdfwyatytl ysvsektene ekmsdnasas sgsdqapssr qhtmvsflkp vlkqiimagk
      421 smqllknlqc kdgspqqaas rdaerkslyt lflesvqsrl rhgeesvpdi iteqqatkqs
      481 likmqsiaer hlelddvhda llainfarly leqsdyhekf tggdvcvdrs sesvtcqtfe
      541 ltlrsclyph idkqyleccg nlmktlkkdy rlveylqamr nfflleagdt mydfytsifd
      601 kireketwqn vaflnvqlqe avgqrypeds srlsisfesv dtakkklpvh tldgltlsyk
      661 vpwpvdivis lecqkiynqv fllllqikwa kysldvlrfd elvcaaenpq vkegtlleqg
      721 mlplfgpqte nikqqihrmf llrvklmhfv nslhnyimtr ilhstglefq hqvedakdld
      781 qlikihyryl stihdrcllr ekvsfvkeai mkvlnlvlmf adrwqaglga wkmesmekme
      841 sdfknchmfl vtvlnkavcr gsfphlesla lslmagmeqs
//
LOCUS       XP_053929905             571 aa            linear   VRT 09-MAR-2023
DEFINITION  glycerol kinase isoform X1 [Cuculus canorus].
ACCESSION   XP_053929905
VERSION     XP_053929905.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073930.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..571
                     /product="glycerol kinase isoform X1"
                     /calculated_mol_wt=62342
     Region          11..517
                     /region_name="ASKHA_NBD_FGGY_GK1-3-like"
                     /note="nucleotide-binding domain (NBD) of metazoan
                     glycerol kinase 1-3 (GK1-3) and similar proteins; cd07792"
                     /db_xref="CDD:466802"
     CDS             1..571
                     /gene="GK"
                     /coded_by="XM_054073930.1:35..1750"
                     /db_xref="GeneID:104057359"
ORIGIN      
        1 maashrmvlg plvgsidqgt sstrflvfna ktaellshhq veiqqkfpke gwveqdpkei
       61 lksvhecvek tceklqqlni ditnikaigv snqrettvvw dkttgeplyn aivwldlrtq
      121 stveqllkri pgqnkaffkf rtglplstyf savkirwlld nvegvkqava dgramfgtid
      181 swliwsltgg knggvhctdv tnasrtmlfn ihslewdpel cqffdipmev lpkvrsssei
      241 yglmkicpsl ksgaltgvpi sgclgdqsaa lvgqmcfqdg qakntygtgc fllcntgqks
      301 vfsehglltt iayklgrdkp vcyalegsva iagavvrwlr dnlgiikttq eveklaaevg
      361 tsygcyfvpa fsglyapywe psargiicgl tqftnknhia faaleavcfq treildaink
      421 dcgiplnqlq vdggmtnnkv lmqlqsdilc ipvvkpsmpe ttalgaamaa gaaegvgiws
      481 lnpgdltavt cerfepqinp eesefryarw kkavvksmgw etsqapsngd tsifcslplg
      541 ffimssiiml igakyvsvis ivglriesae d
//
LOCUS       XP_053929916             565 aa            linear   VRT 09-MAR-2023
DEFINITION  glycerol kinase isoform X2 [Cuculus canorus].
ACCESSION   XP_053929916
VERSION     XP_053929916.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073941.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..565
                     /product="glycerol kinase isoform X2"
                     /calculated_mol_wt=61700
     Region          11..511
                     /region_name="ASKHA_NBD_FGGY_GK1-3-like"
                     /note="nucleotide-binding domain (NBD) of metazoan
                     glycerol kinase 1-3 (GK1-3) and similar proteins; cd07792"
                     /db_xref="CDD:466802"
     CDS             1..565
                     /gene="GK"
                     /coded_by="XM_054073941.1:35..1732"
                     /db_xref="GeneID:104057359"
ORIGIN      
        1 maashrmvlg plvgsidqgt sstrflvfna ktaellshhq veiqqkfpke gwveqdpkei
       61 lksvhecvek tceklqqlni ditnikaigv snqrettvvw dkttgeplyn aivwldlrtq
      121 stveqllkri pgqnkaffkf rtglplstyf savkirwlld nvegvkqava dgramfgtid
      181 swliwsltgg knggvhctdv tnasrtmlfn ihslewdpel cqffdipmev lpkvrsssei
      241 yglmksgalt gvpisgclgd qsaalvgqmc fqdgqaknty gtgcfllcnt gqksvfsehg
      301 llttiayklg rdkpvcyale gsvaiagavv rwlrdnlgii kttqevekla aevgtsygcy
      361 fvpafsglya pywepsargi icgltqftnk nhiafaalea vcfqtreild ainkdcgipl
      421 nqlqvdggmt nnkvlmqlqs dilcipvvkp smpettalga amaagaaegv giwslnpgdl
      481 tavtcerfep qinpeesefr yarwkkavvk smgwetsqap sngdtsifcs lplgffimss
      541 iimligakyv svisivglri esaed
//
LOCUS       XP_053929923             561 aa            linear   VRT 09-MAR-2023
DEFINITION  glycerol kinase isoform X3 [Cuculus canorus].
ACCESSION   XP_053929923
VERSION     XP_053929923.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073948.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..561
                     /product="glycerol kinase isoform X3"
                     /calculated_mol_wt=61203
     Region          11..517
                     /region_name="ASKHA_NBD_FGGY_GK1-3-like"
                     /note="nucleotide-binding domain (NBD) of metazoan
                     glycerol kinase 1-3 (GK1-3) and similar proteins; cd07792"
                     /db_xref="CDD:466802"
     CDS             1..561
                     /gene="GK"
                     /coded_by="XM_054073948.1:35..1720"
                     /db_xref="GeneID:104057359"
ORIGIN      
        1 maashrmvlg plvgsidqgt sstrflvfna ktaellshhq veiqqkfpke gwveqdpkei
       61 lksvhecvek tceklqqlni ditnikaigv snqrettvvw dkttgeplyn aivwldlrtq
      121 stveqllkri pgqnkaffkf rtglplstyf savkirwlld nvegvkqava dgramfgtid
      181 swliwsltgg knggvhctdv tnasrtmlfn ihslewdpel cqffdipmev lpkvrsssei
      241 yglmkicpsl ksgaltgvpi sgclgdqsaa lvgqmcfqdg qakntygtgc fllcntgqks
      301 vfsehglltt iayklgrdkp vcyalegsva iagavvrwlr dnlgiikttq eveklaaevg
      361 tsygcyfvpa fsglyapywe psargiicgl tqftnknhia faaleavcfq treildaink
      421 dcgiplnqlq vdggmtnnkv lmqlqsdilc ipvvkpsmpe ttalgaamaa gaaegvgiws
      481 lnpgdltavt cerfepqinp eesefryarw kkavvksmgw etsqapsngd tsifcslplg
      541 ffimssiiml igakyvsgtg k
//
LOCUS       XP_053929929             552 aa            linear   VRT 09-MAR-2023
DEFINITION  glycerol kinase isoform X4 [Cuculus canorus].
ACCESSION   XP_053929929
VERSION     XP_053929929.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073954.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..552
                     /product="glycerol kinase isoform X4"
                     /calculated_mol_wt=60275
     Region          11..511
                     /region_name="ASKHA_NBD_FGGY_GK1-3-like"
                     /note="nucleotide-binding domain (NBD) of metazoan
                     glycerol kinase 1-3 (GK1-3) and similar proteins; cd07792"
                     /db_xref="CDD:466802"
     CDS             1..552
                     /gene="GK"
                     /coded_by="XM_054073954.1:35..1693"
                     /db_xref="GeneID:104057359"
ORIGIN      
        1 maashrmvlg plvgsidqgt sstrflvfna ktaellshhq veiqqkfpke gwveqdpkei
       61 lksvhecvek tceklqqlni ditnikaigv snqrettvvw dkttgeplyn aivwldlrtq
      121 stveqllkri pgqnkaffkf rtglplstyf savkirwlld nvegvkqava dgramfgtid
      181 swliwsltgg knggvhctdv tnasrtmlfn ihslewdpel cqffdipmev lpkvrsssei
      241 yglmksgalt gvpisgclgd qsaalvgqmc fqdgqaknty gtgcfllcnt gqksvfsehg
      301 llttiayklg rdkpvcyale gsvaiagavv rwlrdnlgii kttqevekla aevgtsygcy
      361 fvpafsglya pywepsargi icgltqftnk nhiafaalea vcfqtreild ainkdcgipl
      421 nqlqvdggmt nnkvlmqlqs dilcipvvkp smpettalga amaagaaegv giwslnpgdl
      481 tavtcerfep qinpeesefr yarwkkavvk smgwetsqap sngdtsifcs lplgffimss
      541 iimligakyv sg
//
LOCUS       XP_053929935             542 aa            linear   VRT 09-MAR-2023
DEFINITION  glycerol kinase isoform X5 [Cuculus canorus].
ACCESSION   XP_053929935
VERSION     XP_053929935.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073960.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..542
                     /product="glycerol kinase isoform X5"
                     /calculated_mol_wt=59248
     Region          11..517
                     /region_name="ASKHA_NBD_FGGY_GK1-3-like"
                     /note="nucleotide-binding domain (NBD) of metazoan
                     glycerol kinase 1-3 (GK1-3) and similar proteins; cd07792"
                     /db_xref="CDD:466802"
     CDS             1..542
                     /gene="GK"
                     /coded_by="XM_054073960.1:35..1663"
                     /db_xref="GeneID:104057359"
ORIGIN      
        1 maashrmvlg plvgsidqgt sstrflvfna ktaellshhq veiqqkfpke gwveqdpkei
       61 lksvhecvek tceklqqlni ditnikaigv snqrettvvw dkttgeplyn aivwldlrtq
      121 stveqllkri pgqnkaffkf rtglplstyf savkirwlld nvegvkqava dgramfgtid
      181 swliwsltgg knggvhctdv tnasrtmlfn ihslewdpel cqffdipmev lpkvrsssei
      241 yglmkicpsl ksgaltgvpi sgclgdqsaa lvgqmcfqdg qakntygtgc fllcntgqks
      301 vfsehglltt iayklgrdkp vcyalegsva iagavvrwlr dnlgiikttq eveklaaevg
      361 tsygcyfvpa fsglyapywe psargiicgl tqftnknhia faaleavcfq treildaink
      421 dcgiplnqlq vdggmtnnkv lmqlqsdilc ipvvkpsmpe ttalgaamaa gaaegvgiws
      481 lnpgdltavt cerfepqinp eesefryarw kkavvksmgw etsqapsnvi sivglriesa
      541 ed
//
LOCUS       XP_053929945             532 aa            linear   VRT 09-MAR-2023
DEFINITION  glycerol kinase isoform X6 [Cuculus canorus].
ACCESSION   XP_053929945
VERSION     XP_053929945.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073970.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..532
                     /product="glycerol kinase isoform X6"
                     /calculated_mol_wt=58109
     Region          11..517
                     /region_name="ASKHA_NBD_FGGY_GK1-3-like"
                     /note="nucleotide-binding domain (NBD) of metazoan
                     glycerol kinase 1-3 (GK1-3) and similar proteins; cd07792"
                     /db_xref="CDD:466802"
     CDS             1..532
                     /gene="GK"
                     /coded_by="XM_054073970.1:35..1633"
                     /db_xref="GeneID:104057359"
ORIGIN      
        1 maashrmvlg plvgsidqgt sstrflvfna ktaellshhq veiqqkfpke gwveqdpkei
       61 lksvhecvek tceklqqlni ditnikaigv snqrettvvw dkttgeplyn aivwldlrtq
      121 stveqllkri pgqnkaffkf rtglplstyf savkirwlld nvegvkqava dgramfgtid
      181 swliwsltgg knggvhctdv tnasrtmlfn ihslewdpel cqffdipmev lpkvrsssei
      241 yglmkicpsl ksgaltgvpi sgclgdqsaa lvgqmcfqdg qakntygtgc fllcntgqks
      301 vfsehglltt iayklgrdkp vcyalegsva iagavvrwlr dnlgiikttq eveklaaevg
      361 tsygcyfvpa fsglyapywe psargiicgl tqftnknhia faaleavcfq treildaink
      421 dcgiplnqlq vdggmtnnkv lmqlqsdilc ipvvkpsmpe ttalgaamaa gaaegvgiws
      481 lnpgdltavt cerfepqinp eesefryarw kkavvksmgw etsqapsngt gk
//
LOCUS       XP_053929957            1759 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Shroom2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053929957
VERSION     XP_053929957.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073982.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1759
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1759
                     /product="protein Shroom2 isoform X1"
                     /calculated_mol_wt=196949
     Region          14..95
                     /region_name="PDZ_shroom2_3_4-like"
                     /note="PDZ domain of shroom2, shroom3, shroom4, and
                     related domains; cd06750"
                     /db_xref="CDD:467232"
     Site            order(25..31,43,46,75,79,82..83)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467232"
     Region          704..883
                     /region_name="ASD1"
                     /note="Apx/Shroom domain ASD1; pfam08688"
                     /db_xref="CDD:462562"
     Region          1458..1753
                     /region_name="ASD2"
                     /note="Apx/Shroom domain ASD2; pfam08687"
                     /db_xref="CDD:462561"
     CDS             1..1759
                     /gene="SHROOM2"
                     /coded_by="XM_054073982.1:35..5314"
                     /db_xref="GeneID:104054902"
ORIGIN      
        1 mvamvdqraa egyrlvevll sggapwgftl kggrehgepl iitkiedgsk aaavdkllag
       61 deiigindvg lsgfrqeaic lvkgshktlk lvvkrrndla crphswhatk ftesqpetat
      121 shfsssnaca swhsryhasc sshdlsnswd qsslhrtsdq fsslgsmdsw dhtpqvgqyg
      181 rlssarsnss idhlgsqskr dsaygsfsts sstpdhtlsn adtsstenml ykvghwetak
      241 hgnkpgqffs dssgtedklg ylpapiqyen nrsprieeqh dgkltssgrs sfgpvwyvpd
      301 kkkssspppp ppplrsdsfa atkghekahg amysegasmq hftalnqsqp rsdwnletve
      361 qqrwpsracd rrvsnsnyks dlssehtfss tgerynsngg tvnklqssls stdvrfaqpt
      421 ytyhhhhqys destflhnar ilaapkdqqh ylsysgvqel ptpdhfhgys pnqaspfntf
      481 sssnstaeqk vdntgqsryy cvtakqpaqg sskplqlkdd swkpavgada llgthensav
      541 vtmvqkpkhy lpqhsvessl kgcensshyp vdregdarca vveeakklnh teksgqkknf
      601 edsseesetr ygqqvylkgc vlttenrsaq kdfrwgkdes skispqktpm lhslaqegkk
      661 qsgnspeavt erqapfdthl skqarrsdrf attlrneiqm rraklqksrs tatlvgsset
      721 eecsetwkpd saenvtaspd tnftstykdh lkeaqarvlr atsfkrrdld pspaeylprs
      781 perktgsyns sllalvsedv sgfleatqak lnptgsgthh vsrigarkrf tteqklksys
      841 epekinevgm sedechehcc pntteealgs fadrwkffee tskpayrkla qkpapqgqae
      901 alserpdrka hgrqegedsw yerrgqaasv gletahtskd nvhhsgsnka adrivkseqp
      961 qrlgtfaeyq aswkeqrkpi esrssgryhs adnildaghe qhekpqythe rsrsspstdf
     1021 ykqevsvevr rqaenveedg ecifskvnkl dernctvslf skltvslqpp lsreqtclll
     1081 elqrqadpga lrenpqekrd qlnqnlghkw kasvrplhtr eptvlphesr grsgtlpsdy
     1141 rysqenvsek sqdhslphlp csesqtlnen hsslswgkve enhrvepall nkkrgpapqr
     1201 ppppkrdkyr rpdnsslslg tssesllvap shfpsssass tevfashssl cqspaafngk
     1261 lksanphqlq qasstenvcq hleekthlrs esvlstkyry lqkpametsr spspqfapqk
     1321 ltdkppvsvq densariekv idnnttvkmv pikivhsesn aekesrqslv stmeppalps
     1381 glekdqiktl stseqsysrf caytrqgvep epeartkpae pqpaeepgsn lkdssaatpa
     1441 vsyvkarekt ledwkseela reivgrdksl adildpnvki kttmdlmvgi fpkdehllee
     1501 aqqrrkllpk vpspkvseek keeqsvpsai slttnstyys tsapkaelli kmkdmqeqqq
     1561 qqqseddsed eldhdlsekk qelidsisrk lqvlrearet llediqanni lgeeveavvk
     1621 evckpnefdk fkmfigdldk vvnlllslsg rlarvenaln nldentspee qrtlvekqkl
     1681 ltqqhedake lkenldrrer ivfdilanyl seenladyeh fvkmksalii eqreledkik
     1741 lgeeqlkclt dslqperlk
//
LOCUS       XP_053929965            1733 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Shroom2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053929965
VERSION     XP_053929965.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073990.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1733
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1733
                     /product="protein Shroom2 isoform X2"
                     /calculated_mol_wt=194022
     Region          14..95
                     /region_name="PDZ_shroom2_3_4-like"
                     /note="PDZ domain of shroom2, shroom3, shroom4, and
                     related domains; cd06750"
                     /db_xref="CDD:467232"
     Site            order(25..31,43,46,75,79,82..83)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467232"
     Region          704..883
                     /region_name="ASD1"
                     /note="Apx/Shroom domain ASD1; pfam08688"
                     /db_xref="CDD:462562"
     Region          1432..1727
                     /region_name="ASD2"
                     /note="Apx/Shroom domain ASD2; pfam08687"
                     /db_xref="CDD:462561"
     CDS             1..1733
                     /gene="SHROOM2"
                     /coded_by="XM_054073990.1:35..5236"
                     /db_xref="GeneID:104054902"
ORIGIN      
        1 mvamvdqraa egyrlvevll sggapwgftl kggrehgepl iitkiedgsk aaavdkllag
       61 deiigindvg lsgfrqeaic lvkgshktlk lvvkrrndla crphswhatk ftesqpetat
      121 shfsssnaca swhsryhasc sshdlsnswd qsslhrtsdq fsslgsmdsw dhtpqvgqyg
      181 rlssarsnss idhlgsqskr dsaygsfsts sstpdhtlsn adtsstenml ykvghwetak
      241 hgnkpgqffs dssgtedklg ylpapiqyen nrsprieeqh dgkltssgrs sfgpvwyvpd
      301 kkkssspppp ppplrsdsfa atkghekahg amysegasmq hftalnqsqp rsdwnletve
      361 qqrwpsracd rrvsnsnyks dlssehtfss tgerynsngg tvnklqssls stdvrfaqpt
      421 ytyhhhhqys destflhnar ilaapkdqqh ylsysgvqel ptpdhfhgys pnqaspfntf
      481 sssnstaeqk vdntgqsryy cvtakqpaqg sskplqlkdd swkpavgada llgthensav
      541 vtmvqkpkhy lpqhsvessl kgcensshyp vdregdarca vveeakklnh teksgqkknf
      601 edsseesetr ygqqvylkgc vlttenrsaq kdfrwgkdes skispqktpm lhslaqegkk
      661 qsgnspeavt erqapfdthl skqarrsdrf attlrneiqm rraklqksrs tatlvgsset
      721 eecsetwkpd saenvtaspd tnftstykdh lkeaqarvlr atsfkrrdld pspaeylprs
      781 perktgsyns sllalvsedv sgfleatqak lnptgsgthh vsrigarkrf tteqklksys
      841 epekinevgm sedechehcc pntteealgs fadrwkffee tskpayrkla qkpapqgqae
      901 alserpdrka hgrqegedsw yerrgqaasv gletahtskd nvhhsgsnka adrivkseqp
      961 qrlgtfaeyq aswkeqrkpi esrssgryhs adnildaghe qhekpqythe rsrsspstdf
     1021 ykqevsvevr rqaenveedg ecifskvnkl dernctvrqa dpgalrenpq ekrdqlnqnl
     1081 ghkwkasvrp lhtreptvlp hesrgrsgtl psdyrysqen vseksqdhsl phlpcsesqt
     1141 lnenhsslsw gkveenhrve pallnkkrgp apqrppppkr dkyrrpdnss lslgtssesl
     1201 lvapshfpss sasstevfas hsslcqspaa fngklksanp hqlqqasste nvcqhleekt
     1261 hlrsesvlst kyrylqkpam etsrspspqf apqkltdkpp vsvqdensar iekvidnntt
     1321 vkmvpikivh sesnaekesr qslvstmepp alpsglekdq iktlstseqs ysrfcaytrq
     1381 gvepepeart kpaepqpaee pgsnlkdssa atpavsyvka rektledwks eelareivgr
     1441 dksladildp nvkikttmdl mvgifpkdeh lleeaqqrrk llpkvpspkv seekkeeqsv
     1501 psaislttns tyystsapka ellikmkdmq eqqqqqqsed dsedeldhdl sekkqelids
     1561 isrklqvlre aretllediq annilgeeve avvkevckpn efdkfkmfig dldkvvnlll
     1621 slsgrlarve nalnnldent speeqrtlve kqklltqqhe dakelkenld rrerivfdil
     1681 anylseenla dyehfvkmks aliieqrele dkiklgeeql kcltdslqpe rlk
//
LOCUS       XP_053929973            1698 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Shroom2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053929973
VERSION     XP_053929973.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054073998.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1698
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1698
                     /product="protein Shroom2 isoform X3"
                     /calculated_mol_wt=190780
     Region          643..822
                     /region_name="ASD1"
                     /note="Apx/Shroom domain ASD1; pfam08688"
                     /db_xref="CDD:462562"
     Region          1397..1692
                     /region_name="ASD2"
                     /note="Apx/Shroom domain ASD2; pfam08687"
                     /db_xref="CDD:462561"
     CDS             1..1698
                     /gene="SHROOM2"
                     /coded_by="XM_054073998.1:249..5345"
                     /db_xref="GeneID:104054902"
ORIGIN      
        1 mkvvvdivaq nmpsendvhv arnylmkilr ssmrrndlac rphswhatkf tesqpetats
       61 hfsssnacas whsryhascs shdlsnswdq sslhrtsdqf sslgsmdswd htpqvgqygr
      121 lssarsnssi dhlgsqskrd saygsfstss stpdhtlsna dtsstenmly kvghwetakh
      181 gnkpgqffsd ssgtedklgy lpapiqyenn rsprieeqhd gkltssgrss fgpvwyvpdk
      241 kksssppppp pplrsdsfaa tkghekahga mysegasmqh ftalnqsqpr sdwnletveq
      301 qrwpsracdr rvsnsnyksd lssehtfsst gerynsnggt vnklqsslss tdvrfaqpty
      361 tyhhhhqysd estflhnari laapkdqqhy lsysgvqelp tpdhfhgysp nqaspfntfs
      421 ssnstaeqkv dntgqsryyc vtakqpaqgs skplqlkdds wkpavgadal lgthensavv
      481 tmvqkpkhyl pqhsvesslk gcensshypv dregdarcav veeakklnht eksgqkknfe
      541 dsseesetry gqqvylkgcv lttenrsaqk dfrwgkdess kispqktpml hslaqegkkq
      601 sgnspeavte rqapfdthls kqarrsdrfa ttlrneiqmr raklqksrst atlvgssete
      661 ecsetwkpds aenvtaspdt nftstykdhl keaqarvlra tsfkrrdldp spaeylprsp
      721 erktgsynss llalvsedvs gfleatqakl nptgsgthhv srigarkrft teqklksyse
      781 pekinevgms edechehccp ntteealgsf adrwkffeet skpayrklaq kpapqgqaea
      841 lserpdrkah grqegedswy errgqaasvg letahtskdn vhhsgsnkaa drivkseqpq
      901 rlgtfaeyqa swkeqrkpie srssgryhsa dnildagheq hekpqyther srsspstdfy
      961 kqevsvevrr qaenveedge cifskvnkld ernctvslfs kltvslqppl sreqtcllle
     1021 lqrqadpgal renpqekrdq lnqnlghkwk asvrplhtre ptvlphesrg rsgtlpsdyr
     1081 ysqenvseks qdhslphlpc sesqtlnenh sslswgkvee nhrvepalln kkrgpapqrp
     1141 pppkrdkyrr pdnsslslgt ssesllvaps hfpsssasst evfashsslc qspaafngkl
     1201 ksanphqlqq asstenvcqh leekthlrse svlstkyryl qkpametsrs pspqfapqkl
     1261 tdkppvsvqd ensariekvi dnnttvkmvp ikivhsesna ekesrqslvs tmeppalpsg
     1321 lekdqiktls tseqsysrfc aytrqgvepe peartkpaep qpaeepgsnl kdssaatpav
     1381 syvkarektl edwkseelar eivgrdksla dildpnvkik ttmdlmvgif pkdehlleea
     1441 qqrrkllpkv pspkvseekk eeqsvpsais lttnstyyst sapkaellik mkdmqeqqqq
     1501 qqseddsede ldhdlsekkq elidsisrkl qvlrearetl lediqannil geeveavvke
     1561 vckpnefdkf kmfigdldkv vnlllslsgr larvenalnn ldentspeeq rtlvekqkll
     1621 tqqhedakel kenldrreri vfdilanyls eenladyehf vkmksaliie qreledkikl
     1681 geeqlkcltd slqperlk
//
LOCUS       XP_053929980            1698 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Shroom2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053929980
VERSION     XP_053929980.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074005.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1698
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1698
                     /product="protein Shroom2 isoform X4"
                     /calculated_mol_wt=190434
     Region          643..822
                     /region_name="ASD1"
                     /note="Apx/Shroom domain ASD1; pfam08688"
                     /db_xref="CDD:462562"
     Region          1397..1692
                     /region_name="ASD2"
                     /note="Apx/Shroom domain ASD2; pfam08687"
                     /db_xref="CDD:462561"
     CDS             1..1698
                     /gene="SHROOM2"
                     /coded_by="XM_054074005.1:20..5116"
                     /db_xref="GeneID:104054902"
ORIGIN      
        1 mggqtwlpgl weeqvksnaa gsiglavves kakrrndlac rphswhatkf tesqpetats
       61 hfsssnacas whsryhascs shdlsnswdq sslhrtsdqf sslgsmdswd htpqvgqygr
      121 lssarsnssi dhlgsqskrd saygsfstss stpdhtlsna dtsstenmly kvghwetakh
      181 gnkpgqffsd ssgtedklgy lpapiqyenn rsprieeqhd gkltssgrss fgpvwyvpdk
      241 kksssppppp pplrsdsfaa tkghekahga mysegasmqh ftalnqsqpr sdwnletveq
      301 qrwpsracdr rvsnsnyksd lssehtfsst gerynsnggt vnklqsslss tdvrfaqpty
      361 tyhhhhqysd estflhnari laapkdqqhy lsysgvqelp tpdhfhgysp nqaspfntfs
      421 ssnstaeqkv dntgqsryyc vtakqpaqgs skplqlkdds wkpavgadal lgthensavv
      481 tmvqkpkhyl pqhsvesslk gcensshypv dregdarcav veeakklnht eksgqkknfe
      541 dsseesetry gqqvylkgcv lttenrsaqk dfrwgkdess kispqktpml hslaqegkkq
      601 sgnspeavte rqapfdthls kqarrsdrfa ttlrneiqmr raklqksrst atlvgssete
      661 ecsetwkpds aenvtaspdt nftstykdhl keaqarvlra tsfkrrdldp spaeylprsp
      721 erktgsynss llalvsedvs gfleatqakl nptgsgthhv srigarkrft teqklksyse
      781 pekinevgms edechehccp ntteealgsf adrwkffeet skpayrklaq kpapqgqaea
      841 lserpdrkah grqegedswy errgqaasvg letahtskdn vhhsgsnkaa drivkseqpq
      901 rlgtfaeyqa swkeqrkpie srssgryhsa dnildagheq hekpqyther srsspstdfy
      961 kqevsvevrr qaenveedge cifskvnkld ernctvslfs kltvslqppl sreqtcllle
     1021 lqrqadpgal renpqekrdq lnqnlghkwk asvrplhtre ptvlphesrg rsgtlpsdyr
     1081 ysqenvseks qdhslphlpc sesqtlnenh sslswgkvee nhrvepalln kkrgpapqrp
     1141 pppkrdkyrr pdnsslslgt ssesllvaps hfpsssasst evfashsslc qspaafngkl
     1201 ksanphqlqq asstenvcqh leekthlrse svlstkyryl qkpametsrs pspqfapqkl
     1261 tdkppvsvqd ensariekvi dnnttvkmvp ikivhsesna ekesrqslvs tmeppalpsg
     1321 lekdqiktls tseqsysrfc aytrqgvepe peartkpaep qpaeepgsnl kdssaatpav
     1381 syvkarektl edwkseelar eivgrdksla dildpnvkik ttmdlmvgif pkdehlleea
     1441 qqrrkllpkv pspkvseekk eeqsvpsais lttnstyyst sapkaellik mkdmqeqqqq
     1501 qqseddsede ldhdlsekkq elidsisrkl qvlrearetl lediqannil geeveavvke
     1561 vckpnefdkf kmfigdldkv vnlllslsgr larvenalnn ldentspeeq rtlvekqkll
     1621 tqqhedakel kenldrreri vfdilanyls eenladyehf vkmksaliie qreledkikl
     1681 geeqlkcltd slqperlk
//
LOCUS       XP_053929989            1672 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Shroom2 isoform X5 [Cuculus canorus].
ACCESSION   XP_053929989
VERSION     XP_053929989.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074014.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1672
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1672
                     /product="protein Shroom2 isoform X5"
                     /calculated_mol_wt=187854
     Region          643..822
                     /region_name="ASD1"
                     /note="Apx/Shroom domain ASD1; pfam08688"
                     /db_xref="CDD:462562"
     Region          1371..1666
                     /region_name="ASD2"
                     /note="Apx/Shroom domain ASD2; pfam08687"
                     /db_xref="CDD:462561"
     CDS             1..1672
                     /gene="SHROOM2"
                     /coded_by="XM_054074014.1:249..5267"
                     /db_xref="GeneID:104054902"
ORIGIN      
        1 mkvvvdivaq nmpsendvhv arnylmkilr ssmrrndlac rphswhatkf tesqpetats
       61 hfsssnacas whsryhascs shdlsnswdq sslhrtsdqf sslgsmdswd htpqvgqygr
      121 lssarsnssi dhlgsqskrd saygsfstss stpdhtlsna dtsstenmly kvghwetakh
      181 gnkpgqffsd ssgtedklgy lpapiqyenn rsprieeqhd gkltssgrss fgpvwyvpdk
      241 kksssppppp pplrsdsfaa tkghekahga mysegasmqh ftalnqsqpr sdwnletveq
      301 qrwpsracdr rvsnsnyksd lssehtfsst gerynsnggt vnklqsslss tdvrfaqpty
      361 tyhhhhqysd estflhnari laapkdqqhy lsysgvqelp tpdhfhgysp nqaspfntfs
      421 ssnstaeqkv dntgqsryyc vtakqpaqgs skplqlkdds wkpavgadal lgthensavv
      481 tmvqkpkhyl pqhsvesslk gcensshypv dregdarcav veeakklnht eksgqkknfe
      541 dsseesetry gqqvylkgcv lttenrsaqk dfrwgkdess kispqktpml hslaqegkkq
      601 sgnspeavte rqapfdthls kqarrsdrfa ttlrneiqmr raklqksrst atlvgssete
      661 ecsetwkpds aenvtaspdt nftstykdhl keaqarvlra tsfkrrdldp spaeylprsp
      721 erktgsynss llalvsedvs gfleatqakl nptgsgthhv srigarkrft teqklksyse
      781 pekinevgms edechehccp ntteealgsf adrwkffeet skpayrklaq kpapqgqaea
      841 lserpdrkah grqegedswy errgqaasvg letahtskdn vhhsgsnkaa drivkseqpq
      901 rlgtfaeyqa swkeqrkpie srssgryhsa dnildagheq hekpqyther srsspstdfy
      961 kqevsvevrr qaenveedge cifskvnkld ernctvrqad pgalrenpqe krdqlnqnlg
     1021 hkwkasvrpl htreptvlph esrgrsgtlp sdyrysqenv seksqdhslp hlpcsesqtl
     1081 nenhsslswg kveenhrvep allnkkrgpa pqrppppkrd kyrrpdnssl slgtssesll
     1141 vapshfpsss asstevfash sslcqspaaf ngklksanph qlqqassten vcqhleekth
     1201 lrsesvlstk yrylqkpame tsrspspqfa pqkltdkppv svqdensari ekvidnnttv
     1261 kmvpikivhs esnaekesrq slvstmeppa lpsglekdqi ktlstseqsy srfcaytrqg
     1321 vepepeartk paepqpaeep gsnlkdssaa tpavsyvkar ektledwkse elareivgrd
     1381 ksladildpn vkikttmdlm vgifpkdehl leeaqqrrkl lpkvpspkvs eekkeeqsvp
     1441 saislttnst yystsapkae llikmkdmqe qqqqqqsedd sedeldhdls ekkqelidsi
     1501 srklqvlrea retllediqa nnilgeevea vvkevckpne fdkfkmfigd ldkvvnllls
     1561 lsgrlarven alnnldents peeqrtlvek qklltqqhed akelkenldr rerivfdila
     1621 nylseenlad yehfvkmksa liieqreled kiklgeeqlk cltdslqper lk
//
LOCUS       XP_053929998            1593 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Shroom2 isoform X6 [Cuculus canorus].
ACCESSION   XP_053929998
VERSION     XP_053929998.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074023.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1593
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1593
                     /product="protein Shroom2 isoform X6"
                     /calculated_mol_wt=178931
     Region          538..717
                     /region_name="ASD1"
                     /note="Apx/Shroom domain ASD1; pfam08688"
                     /db_xref="CDD:462562"
     Region          1292..1587
                     /region_name="ASD2"
                     /note="Apx/Shroom domain ASD2; pfam08687"
                     /db_xref="CDD:462561"
     CDS             1..1593
                     /gene="SHROOM2"
                     /coded_by="XM_054074023.1:459..5240"
                     /db_xref="GeneID:104054902"
ORIGIN      
        1 mdswdhtpqv gqygrlssar snssidhlgs qskrdsaygs fstssstpdh tlsnadtsst
       61 enmlykvghw etakhgnkpg qffsdssgte dklgylpapi qyennrspri eeqhdgklts
      121 sgrssfgpvw yvpdkkksss ppppppplrs dsfaatkghe kahgamyseg asmqhftaln
      181 qsqprsdwnl etveqqrwps racdrrvsns nyksdlsseh tfsstgeryn snggtvnklq
      241 sslsstdvrf aqptytyhhh hqysdestfl hnarilaapk dqqhylsysg vqelptpdhf
      301 hgyspnqasp fntfsssnst aeqkvdntgq sryycvtakq paqgsskplq lkddswkpav
      361 gadallgthe nsavvtmvqk pkhylpqhsv esslkgcens shypvdregd arcavveeak
      421 klnhteksgq kknfedssee setrygqqvy lkgcvltten rsaqkdfrwg kdesskispq
      481 ktpmlhslaq egkkqsgnsp eavterqapf dthlskqarr sdrfattlrn eiqmrraklq
      541 ksrstatlvg sseteecset wkpdsaenvt aspdtnftst ykdhlkeaqa rvlratsfkr
      601 rdldpspaey lprsperktg synssllalv sedvsgflea tqaklnptgs gthhvsriga
      661 rkrftteqkl ksysepekin evgmsedech ehccpnttee algsfadrwk ffeetskpay
      721 rklaqkpapq gqaealserp drkahgrqeg edswyerrgq aasvgletah tskdnvhhsg
      781 snkaadrivk seqpqrlgtf aeyqaswkeq rkpiesrssg ryhsadnild agheqhekpq
      841 ythersrssp stdfykqevs vevrrqaenv eedgecifsk vnkldernct vslfskltvs
      901 lqpplsreqt clllelqrqa dpgalrenpq ekrdqlnqnl ghkwkasvrp lhtreptvlp
      961 hesrgrsgtl psdyrysqen vseksqdhsl phlpcsesqt lnenhsslsw gkveenhrve
     1021 pallnkkrgp apqrppppkr dkyrrpdnss lslgtssesl lvapshfpss sasstevfas
     1081 hsslcqspaa fngklksanp hqlqqasste nvcqhleekt hlrsesvlst kyrylqkpam
     1141 etsrspspqf apqkltdkpp vsvqdensar iekvidnntt vkmvpikivh sesnaekesr
     1201 qslvstmepp alpsglekdq iktlstseqs ysrfcaytrq gvepepeart kpaepqpaee
     1261 pgsnlkdssa atpavsyvka rektledwks eelareivgr dksladildp nvkikttmdl
     1321 mvgifpkdeh lleeaqqrrk llpkvpspkv seekkeeqsv psaislttns tyystsapka
     1381 ellikmkdmq eqqqqqqsed dsedeldhdl sekkqelids isrklqvlre aretllediq
     1441 annilgeeve avvkevckpn efdkfkmfig dldkvvnlll slsgrlarve nalnnldent
     1501 speeqrtlve kqklltqqhe dakelkenld rrerivfdil anylseenla dyehfvkmks
     1561 aliieqrele dkiklgeeql kcltdslqpe rlk
//
LOCUS       XP_053930008            1593 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Shroom2 isoform X6 [Cuculus canorus].
ACCESSION   XP_053930008
VERSION     XP_053930008.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074033.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1593
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1593
                     /product="protein Shroom2 isoform X6"
                     /calculated_mol_wt=178931
     Region          538..717
                     /region_name="ASD1"
                     /note="Apx/Shroom domain ASD1; pfam08688"
                     /db_xref="CDD:462562"
     Region          1292..1587
                     /region_name="ASD2"
                     /note="Apx/Shroom domain ASD2; pfam08687"
                     /db_xref="CDD:462561"
     CDS             1..1593
                     /gene="SHROOM2"
                     /coded_by="XM_054074033.1:344..5125"
                     /db_xref="GeneID:104054902"
ORIGIN      
        1 mdswdhtpqv gqygrlssar snssidhlgs qskrdsaygs fstssstpdh tlsnadtsst
       61 enmlykvghw etakhgnkpg qffsdssgte dklgylpapi qyennrspri eeqhdgklts
      121 sgrssfgpvw yvpdkkksss ppppppplrs dsfaatkghe kahgamyseg asmqhftaln
      181 qsqprsdwnl etveqqrwps racdrrvsns nyksdlsseh tfsstgeryn snggtvnklq
      241 sslsstdvrf aqptytyhhh hqysdestfl hnarilaapk dqqhylsysg vqelptpdhf
      301 hgyspnqasp fntfsssnst aeqkvdntgq sryycvtakq paqgsskplq lkddswkpav
      361 gadallgthe nsavvtmvqk pkhylpqhsv esslkgcens shypvdregd arcavveeak
      421 klnhteksgq kknfedssee setrygqqvy lkgcvltten rsaqkdfrwg kdesskispq
      481 ktpmlhslaq egkkqsgnsp eavterqapf dthlskqarr sdrfattlrn eiqmrraklq
      541 ksrstatlvg sseteecset wkpdsaenvt aspdtnftst ykdhlkeaqa rvlratsfkr
      601 rdldpspaey lprsperktg synssllalv sedvsgflea tqaklnptgs gthhvsriga
      661 rkrftteqkl ksysepekin evgmsedech ehccpnttee algsfadrwk ffeetskpay
      721 rklaqkpapq gqaealserp drkahgrqeg edswyerrgq aasvgletah tskdnvhhsg
      781 snkaadrivk seqpqrlgtf aeyqaswkeq rkpiesrssg ryhsadnild agheqhekpq
      841 ythersrssp stdfykqevs vevrrqaenv eedgecifsk vnkldernct vslfskltvs
      901 lqpplsreqt clllelqrqa dpgalrenpq ekrdqlnqnl ghkwkasvrp lhtreptvlp
      961 hesrgrsgtl psdyrysqen vseksqdhsl phlpcsesqt lnenhsslsw gkveenhrve
     1021 pallnkkrgp apqrppppkr dkyrrpdnss lslgtssesl lvapshfpss sasstevfas
     1081 hsslcqspaa fngklksanp hqlqqasste nvcqhleekt hlrsesvlst kyrylqkpam
     1141 etsrspspqf apqkltdkpp vsvqdensar iekvidnntt vkmvpikivh sesnaekesr
     1201 qslvstmepp alpsglekdq iktlstseqs ysrfcaytrq gvepepeart kpaepqpaee
     1261 pgsnlkdssa atpavsyvka rektledwks eelareivgr dksladildp nvkikttmdl
     1321 mvgifpkdeh lleeaqqrrk llpkvpspkv seekkeeqsv psaislttns tyystsapka
     1381 ellikmkdmq eqqqqqqsed dsedeldhdl sekkqelids isrklqvlre aretllediq
     1441 annilgeeve avvkevckpn efdkfkmfig dldkvvnlll slsgrlarve nalnnldent
     1501 speeqrtlve kqklltqqhe dakelkenld rrerivfdil anylseenla dyehfvkmks
     1561 aliieqrele dkiklgeeql kcltdslqpe rlk
//
LOCUS       XP_053930021            1593 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Shroom2 isoform X6 [Cuculus canorus].
ACCESSION   XP_053930021
VERSION     XP_053930021.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074046.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1593
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1593
                     /product="protein Shroom2 isoform X6"
                     /calculated_mol_wt=178931
     Region          538..717
                     /region_name="ASD1"
                     /note="Apx/Shroom domain ASD1; pfam08688"
                     /db_xref="CDD:462562"
     Region          1292..1587
                     /region_name="ASD2"
                     /note="Apx/Shroom domain ASD2; pfam08687"
                     /db_xref="CDD:462561"
     CDS             1..1593
                     /gene="SHROOM2"
                     /coded_by="XM_054074046.1:339..5120"
                     /db_xref="GeneID:104054902"
ORIGIN      
        1 mdswdhtpqv gqygrlssar snssidhlgs qskrdsaygs fstssstpdh tlsnadtsst
       61 enmlykvghw etakhgnkpg qffsdssgte dklgylpapi qyennrspri eeqhdgklts
      121 sgrssfgpvw yvpdkkksss ppppppplrs dsfaatkghe kahgamyseg asmqhftaln
      181 qsqprsdwnl etveqqrwps racdrrvsns nyksdlsseh tfsstgeryn snggtvnklq
      241 sslsstdvrf aqptytyhhh hqysdestfl hnarilaapk dqqhylsysg vqelptpdhf
      301 hgyspnqasp fntfsssnst aeqkvdntgq sryycvtakq paqgsskplq lkddswkpav
      361 gadallgthe nsavvtmvqk pkhylpqhsv esslkgcens shypvdregd arcavveeak
      421 klnhteksgq kknfedssee setrygqqvy lkgcvltten rsaqkdfrwg kdesskispq
      481 ktpmlhslaq egkkqsgnsp eavterqapf dthlskqarr sdrfattlrn eiqmrraklq
      541 ksrstatlvg sseteecset wkpdsaenvt aspdtnftst ykdhlkeaqa rvlratsfkr
      601 rdldpspaey lprsperktg synssllalv sedvsgflea tqaklnptgs gthhvsriga
      661 rkrftteqkl ksysepekin evgmsedech ehccpnttee algsfadrwk ffeetskpay
      721 rklaqkpapq gqaealserp drkahgrqeg edswyerrgq aasvgletah tskdnvhhsg
      781 snkaadrivk seqpqrlgtf aeyqaswkeq rkpiesrssg ryhsadnild agheqhekpq
      841 ythersrssp stdfykqevs vevrrqaenv eedgecifsk vnkldernct vslfskltvs
      901 lqpplsreqt clllelqrqa dpgalrenpq ekrdqlnqnl ghkwkasvrp lhtreptvlp
      961 hesrgrsgtl psdyrysqen vseksqdhsl phlpcsesqt lnenhsslsw gkveenhrve
     1021 pallnkkrgp apqrppppkr dkyrrpdnss lslgtssesl lvapshfpss sasstevfas
     1081 hsslcqspaa fngklksanp hqlqqasste nvcqhleekt hlrsesvlst kyrylqkpam
     1141 etsrspspqf apqkltdkpp vsvqdensar iekvidnntt vkmvpikivh sesnaekesr
     1201 qslvstmepp alpsglekdq iktlstseqs ysrfcaytrq gvepepeart kpaepqpaee
     1261 pgsnlkdssa atpavsyvka rektledwks eelareivgr dksladildp nvkikttmdl
     1321 mvgifpkdeh lleeaqqrrk llpkvpspkv seekkeeqsv psaislttns tyystsapka
     1381 ellikmkdmq eqqqqqqsed dsedeldhdl sekkqelids isrklqvlre aretllediq
     1441 annilgeeve avvkevckpn efdkfkmfig dldkvvnlll slsgrlarve nalnnldent
     1501 speeqrtlve kqklltqqhe dakelkenld rrerivfdil anylseenla dyehfvkmks
     1561 aliieqrele dkiklgeeql kcltdslqpe rlk
//
LOCUS       XP_053930027            1794 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Shroom2 isoform X7 [Cuculus canorus].
ACCESSION   XP_053930027
VERSION     XP_053930027.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074052.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1794
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1794
                     /product="protein Shroom2 isoform X7"
                     /calculated_mol_wt=201004
     Region          14..89
                     /region_name="PDZ_shroom2_3_4-like"
                     /note="PDZ domain of shroom2, shroom3, shroom4, and
                     related domains; cd06750"
                     /db_xref="CDD:467232"
     Site            order(25..31,43,46,75,79,82..83)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467232"
     Region          739..918
                     /region_name="ASD1"
                     /note="Apx/Shroom domain ASD1; pfam08688"
                     /db_xref="CDD:462562"
     Region          1493..1788
                     /region_name="ASD2"
                     /note="Apx/Shroom domain ASD2; pfam08687"
                     /db_xref="CDD:462561"
     CDS             1..1794
                     /gene="SHROOM2"
                     /coded_by="XM_054074052.1:35..5419"
                     /db_xref="GeneID:104054902"
ORIGIN      
        1 mvamvdqraa egyrlvevll sggapwgftl kggrehgepl iitkiedgsk aaavdkllag
       61 deiigindvg lsgfrqeaic lvkgshktlk lvvkrkmkvv vdivaqnmps endvhvarny
      121 lmkilrssmr rndlacrphs whatkftesq petatshfss snacaswhsr yhascsshdl
      181 snswdqsslh rtsdqfsslg smdswdhtpq vgqygrlssa rsnssidhlg sqskrdsayg
      241 sfstssstpd htlsnadtss tenmlykvgh wetakhgnkp gqffsdssgt edklgylpap
      301 iqyennrspr ieeqhdgklt ssgrssfgpv wyvpdkkkss sppppppplr sdsfaatkgh
      361 ekahgamyse gasmqhftal nqsqprsdwn letveqqrwp sracdrrvsn snyksdlsse
      421 htfsstgery nsnggtvnkl qsslsstdvr faqptytyhh hhqysdestf lhnarilaap
      481 kdqqhylsys gvqelptpdh fhgyspnqas pfntfsssns taeqkvdntg qsryycvtak
      541 qpaqgsskpl qlkddswkpa vgadallgth ensavvtmvq kpkhylpqhs vesslkgcen
      601 sshypvdreg darcavveea kklnhteksg qkknfedsse esetrygqqv ylkgcvltte
      661 nrsaqkdfrw gkdesskisp qktpmlhsla qegkkqsgns peavterqap fdthlskqar
      721 rsdrfattlr neiqmrrakl qksrstatlv gsseteecse twkpdsaenv taspdtnfts
      781 tykdhlkeaq arvlratsfk rrdldpspae ylprsperkt gsynssllal vsedvsgfle
      841 atqaklnptg sgthhvsrig arkrftteqk lksysepeki nevgmsedec hehccpntte
      901 ealgsfadrw kffeetskpa yrklaqkpap qgqaealser pdrkahgrqe gedswyerrg
      961 qaasvgleta htskdnvhhs gsnkaadriv kseqpqrlgt faeyqaswke qrkpiesrss
     1021 gryhsadnil dagheqhekp qythersrss pstdfykqev svevrrqaen veedgecifs
     1081 kvnkldernc tvslfskltv slqpplsreq tclllelqrq adpgalrenp qekrdqlnqn
     1141 lghkwkasvr plhtreptvl phesrgrsgt lpsdyrysqe nvseksqdhs lphlpcsesq
     1201 tlnenhssls wgkveenhrv epallnkkrg papqrppppk rdkyrrpdns slslgtsses
     1261 llvapshfps ssasstevfa shsslcqspa afngklksan phqlqqasst envcqhleek
     1321 thlrsesvls tkyrylqkpa metsrspspq fapqkltdkp pvsvqdensa riekvidnnt
     1381 tvkmvpikiv hsesnaekes rqslvstmep palpsglekd qiktlstseq sysrfcaytr
     1441 qgvepepear tkpaepqpae epgsnlkdss aatpavsyvk arektledwk seelareivg
     1501 rdksladild pnvkikttmd lmvgifpkde hlleeaqqrr kllpkvpspk vseekkeeqs
     1561 vpsaislttn styystsapk aellikmkdm qeqqqqqqse ddsedeldhd lsekkqelid
     1621 sisrklqvlr earetlledi qannilgeev eavvkevckp nefdkfkmfi gdldkvvnll
     1681 lslsgrlarv enalnnlden tspeeqrtlv ekqklltqqh edakelkenl drrerivfdi
     1741 lanylseenl adyehfvkmk saliieqrel edkiklgeeq lkcltdslqp erlk
//
LOCUS       XP_053930042            1355 aa            linear   VRT 09-MAR-2023
DEFINITION  BRCA2-interacting transcriptional repressor EMSY isoform X1
            [Cuculus canorus].
ACCESSION   XP_053930042
VERSION     XP_053930042.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074067.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1355
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1355
                     /product="BRCA2-interacting transcriptional repressor EMSY
                     isoform X1"
                     /calculated_mol_wt=145241
     Region          17..86
                     /region_name="ENT"
                     /note="ENT domain; pfam03735"
                     /db_xref="CDD:461032"
     Region          <490..592
                     /region_name="COG3889"
                     /note="Extracellular solute-binding protein, contains
                     Ig-fold domain [General function prediction only]"
                     /db_xref="CDD:443097"
     CDS             1..1355
                     /gene="EMSY"
                     /coded_by="XM_054074067.1:180..4247"
                     /db_xref="GeneID:104064129"
ORIGIN      
        1 mpvvwptlld lsrdeckril rkleleayag visalraqgd ltkekkdllg elskvlsist
       61 erhraevrra vnderlttia hnmsgpnsss ewsiegrrlv plmprlvpqt aftvtanava
      121 naavqhnasl pvpaetgnke vvvcysytst tstptstpvp sgsvatvksp rpaspasnvv
      181 vlpsgstvyv ksvscsddde kprkrrrtns sssspvllke vpkavtpvtk titvpvsgsp
      241 kmsnimqsia nslpphmspv kitftkpstq ttntttqkvi ivttspsstf vpnilskshn
      301 yaavtklvpt sviasttqkq pvvitasqss lvsssssssc stpsctanti avtavvsstp
      361 svvmstvaqg vstsaikvas srlpspkglv gnptqilaqf pkqhqqsskq qlhqiqqaqq
      421 qqqqqqqqqq qqqqaqqqqq qqqqqlvqss vaqqqpqqsq lppgikptiq ikqesgvkii
      481 tqqvqpskil pkpvtatlps ssnspimvvs sngtimttkl vttptgtqat ytrptvspsi
      541 garmagtpga atyvkttsgs iitvvpksla tlggkiissn ivsgtttkit tipmtskpnv
      601 ivvqkttgkg ttiqglpgkn vvttllnagg ektiqavpag akpaiitatr pitkmivtqp
      661 kgigstvqpa tkiiptkivy gqqgktqvli kpkpvtfqat vvseqtrqlv tetlqqasrv
      721 aetgnsslpe vkeepqtytd ssssstessq ssqdsqpvvh viasrsqdws eheiavdtsp
      781 tiiyqdvsse sqsatstika llelqqttvk ekleskprqp tidlsqmavp iqmtqekrhs
      841 pespsiavve selvaeyitt dsgrqhcigs hseeylhnhi vshrsqphqq ssqpqrtllq
      901 hvaqsqtatq tsvvvksipa sstgaithim qqalsshtaf tkhseqlgte egeveemdtl
      961 dpqtglfyrs altqsqtqkq qklsqpqleq tqlqvktlqc fqtkqkqtih lqadqiqhkl
     1021 pqmpqlsirh qkltplqqeq aqtkpdaqhp phpmmakerq lptlvaqpqq tvvqvlavkt
     1081 tqqlpklqqa ptaqkiyvqp qppqsqmqlp assekqpasq vqhpiitqgs tvtkitfegh
     1141 qppsvskvag gnsvpelalp vtslfpmqas aktavadilr vsvveaqidt siehtivdpp
     1201 nkaistskla seaesspctq vprvtavgmt atsipqqqtc aessssppav gptlterkld
     1261 aqgmpttnqf ihiqnisqkq aeessseivv qtiphysipc hsssnvvvep sgllelnnft
     1321 sqrlddeeta veqdvdsgte dgtepspsrs saeqs
//
LOCUS       XP_053930052            1305 aa            linear   VRT 09-MAR-2023
DEFINITION  BRCA2-interacting transcriptional repressor EMSY isoform X2
            [Cuculus canorus].
ACCESSION   XP_053930052
VERSION     XP_053930052.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074077.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1305
                     /product="BRCA2-interacting transcriptional repressor EMSY
                     isoform X2"
                     /calculated_mol_wt=140066
     Region          17..86
                     /region_name="ENT"
                     /note="ENT domain; pfam03735"
                     /db_xref="CDD:461032"
     CDS             1..1305
                     /gene="EMSY"
                     /coded_by="XM_054074077.1:180..4097"
                     /db_xref="GeneID:104064129"
ORIGIN      
        1 mpvvwptlld lsrdeckril rkleleayag visalraqgd ltkekkdllg elskvlsist
       61 erhraevrra vnderlttia hnmsgpnsss ewsiegrrlv plmprlvpqt aftvtanava
      121 naavqhnasl pvpaetgnke vvvcysytst tstptstpvp sgsvatvksp rpaspasnvv
      181 vlpsgstvyv ksvscsddde kprkrrrtns sssspvllke vpkavtpvtk titvpvsgsp
      241 kmsnimqsia nslpphmspv kitftkpstq ttntttqkvi ivttspsstf vpnilskshn
      301 yaavtklvpt sviasttqkq pvvitasqss lvsssssssc stpsctanti avtavvsstp
      361 svvmstvaqg vstsaikvas srlpspkglv gnptqilaqf pkqhqqsskq qlhqiqqaqq
      421 qqqqqqqqqq qqqqaqqqqq qqqqqlvqss vaqqqpqqsq lppgikptiq ikqesgtqat
      481 ytrptvspsi garmagtpga atyvkttsgs iitvvpksla tlggkiissn ivsgtttkit
      541 tipmtskpnv ivvqkttgkg ttiqglpgkn vvttllnagg ektiqavpag akpaiitatr
      601 pitkmivtqp kgigstvqpa tkiiptkivy gqqgktqvli kpkpvtfqat vvseqtrqlv
      661 tetlqqasrv aetgnsslpe vkeepqtytd ssssstessq ssqdsqpvvh viasrsqdws
      721 eheiavdtsp tiiyqdvsse sqsatstika llelqqttvk ekleskprqp tidlsqmavp
      781 iqmtqekrhs pespsiavve selvaeyitt dsgrqhcigs hseeylhnhi vshrsqphqq
      841 ssqpqrtllq hvaqsqtatq tsvvvksipa sstgaithim qqalsshtaf tkhseqlgte
      901 egeveemdtl dpqtglfyrs altqsqtqkq qklsqpqleq tqlqvktlqc fqtkqkqtih
      961 lqadqiqhkl pqmpqlsirh qkltplqqeq aqtkpdaqhp phpmmakerq lptlvaqpqq
     1021 tvvqvlavkt tqqlpklqqa ptaqkiyvqp qppqsqmqlp assekqpasq vqhpiitqgs
     1081 tvtkitfegh qppsvskvag gnsvpelalp vtslfpmqas aktavadilr vsvveaqidt
     1141 siehtivdpp nkaistskla seaesspctq vprvtavgmt atsipqqqtc aessssppav
     1201 gptlterkld aqgmpttnqf ihiqnisqkq aeessseivv qtiphysipc hsssnvvvep
     1261 sgllelnnft sqrlddeeta veqdvdsgte dgtepspsrs saeqs
//
LOCUS       XP_053930057            1304 aa            linear   VRT 09-MAR-2023
DEFINITION  BRCA2-interacting transcriptional repressor EMSY isoform X3
            [Cuculus canorus].
ACCESSION   XP_053930057
VERSION     XP_053930057.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074082.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1304
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1304
                     /product="BRCA2-interacting transcriptional repressor EMSY
                     isoform X3"
                     /calculated_mol_wt=140114
     Region          17..86
                     /region_name="ENT"
                     /note="ENT domain; pfam03735"
                     /db_xref="CDD:461032"
     Region          <439..541
                     /region_name="COG3889"
                     /note="Extracellular solute-binding protein, contains
                     Ig-fold domain [General function prediction only]"
                     /db_xref="CDD:443097"
     CDS             1..1304
                     /gene="EMSY"
                     /coded_by="XM_054074082.1:180..4094"
                     /db_xref="GeneID:104064129"
ORIGIN      
        1 mpvvwptlld lsrdeckril rkleleayag visalraqgd ltkekkdllg elskvlsist
       61 erhraevrra vnderlttia hnmsgpnsss ewsiegrrlv plmprlvpqt aftvtanava
      121 naavqhnasl pvpaetgnke gvscsdddek prkrrrtnss ssspvllkev pkavtpvtkt
      181 itvpvsgspk msnimqsian slpphmspvk itftkpstqt tntttqkvii vttspsstfv
      241 pnilskshny aavtklvpts viasttqkqp vvitasqssl vssssssscs tpsctantia
      301 vtavvsstps vvmstvaqgv stsaikvass rlpspkglvg nptqilaqfp kqhqqsskqq
      361 lhqiqqaqqq qqqqqqqqqq qqqaqqqqqq qqqqlvqssv aqqqpqqsql ppgikptiqi
      421 kqesgvkiit qqvqpskilp kpvtatlpss snspimvvss ngtimttklv ttptgtqaty
      481 trptvspsig armagtpgaa tyvkttsgsi itvvpkslat lggkiissni vsgtttkitt
      541 ipmtskpnvi vvqkttgkgt tiqglpgknv vttllnagge ktiqavpaga kpaiitatrp
      601 itkmivtqpk gigstvqpat kiiptkivyg qqgktqvlik pkpvtfqatv vseqtrqlvt
      661 etlqqasrva etgnsslpev keepqtytds sssstessqs sqdsqpvvhv iasrsqdwse
      721 heiavdtspt iiyqdvsses qsatstikal lelqqttvke kleskprqpt idlsqmavpi
      781 qmtqekrhsp espsiavves elvaeyittd sgrqhcigsh seeylhnhiv shrsqphqqs
      841 sqpqrtllqh vaqsqtatqt svvvksipas stgaithimq qalsshtaft khseqlgtee
      901 geveemdtld pqtglfyrsa ltqsqtqkqq klsqpqleqt qlqvktlqcf qtkqkqtihl
      961 qadqiqhklp qmpqlsirhq kltplqqeqa qtkpdaqhpp hpmmakerql ptlvaqpqqt
     1021 vvqvlavktt qqlpklqqap taqkiyvqpq ppqsqmqlpa ssekqpasqv qhpiitqgst
     1081 vtkitfeghq ppsvskvagg nsvpelalpv tslfpmqasa ktavadilrv svveaqidts
     1141 iehtivdppn kaistsklas eaesspctqv prvtavgmta tsipqqqtca essssppavg
     1201 ptlterklda qgmpttnqfi hiqnisqkqa eessseivvq tiphysipch sssnvvveps
     1261 gllelnnfts qrlddeetav eqdvdsgted gtepspsrss aeqs
//
LOCUS       XP_053930061            1297 aa            linear   VRT 09-MAR-2023
DEFINITION  BRCA2-interacting transcriptional repressor EMSY isoform X4
            [Cuculus canorus].
ACCESSION   XP_053930061
VERSION     XP_053930061.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074086.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1297
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1297
                     /product="BRCA2-interacting transcriptional repressor EMSY
                     isoform X4"
                     /calculated_mol_wt=139232
     Region          17..86
                     /region_name="ENT"
                     /note="ENT domain; pfam03735"
                     /db_xref="CDD:461032"
     Region          <490..592
                     /region_name="COG3889"
                     /note="Extracellular solute-binding protein, contains
                     Ig-fold domain [General function prediction only]"
                     /db_xref="CDD:443097"
     CDS             1..1297
                     /gene="EMSY"
                     /coded_by="XM_054074086.1:180..4073"
                     /db_xref="GeneID:104064129"
ORIGIN      
        1 mpvvwptlld lsrdeckril rkleleayag visalraqgd ltkekkdllg elskvlsist
       61 erhraevrra vnderlttia hnmsgpnsss ewsiegrrlv plmprlvpqt aftvtanava
      121 naavqhnasl pvpaetgnke vvvcysytst tstptstpvp sgsvatvksp rpaspasnvv
      181 vlpsgstvyv ksvscsddde kprkrrrtns sssspvllke vpkavtpvtk titvpvsgsp
      241 kmsnimqsia nslpphmspv kitftkpstq ttntttqkvi ivttspsstf vpnilskshn
      301 yaavtklvpt sviasttqkq pvvitasqss lvsssssssc stpsctanti avtavvsstp
      361 svvmstvaqg vstsaikvas srlpspkglv gnptqilaqf pkqhqqsskq qlhqiqqaqq
      421 qqqqqqqqqq qqqqaqqqqq qqqqqlvqss vaqqqpqqsq lppgikptiq ikqesgvkii
      481 tqqvqpskil pkpvtatlps ssnspimvvs sngtimttkl vttptgtqat ytrptvspsi
      541 garmagtpga atyvkttsgs iitvvpksla tlggkiissn ivsgtttkit tipmtskpnv
      601 ivvqkttgkg ttiqglpgkn vvttllnagv likpkpvtfq atvvseqtrq lvtetlqqas
      661 rvaetgnssl pevkeepqty tdssssstes sqssqdsqpv vhviasrsqd wseheiavdt
      721 sptiiyqdvs sesqsatsti kallelqqtt vkekleskpr qptidlsqma vpiqmtqekr
      781 hspespsiav veselvaeyi ttdsgrqhci gshseeylhn hivshrsqph qqssqpqrtl
      841 lqhvaqsqta tqtsvvvksi passtgaith imqqalssht aftkhseqlg teegeveemd
      901 tldpqtglfy rsaltqsqtq kqqklsqpql eqtqlqvktl qcfqtkqkqt ihlqadqiqh
      961 klpqmpqlsi rhqkltplqq eqaqtkpdaq hpphpmmake rqlptlvaqp qqtvvqvlav
     1021 kttqqlpklq qaptaqkiyv qpqppqsqmq lpassekqpa sqvqhpiitq gstvtkitfe
     1081 ghqppsvskv aggnsvpela lpvtslfpmq asaktavadi lrvsvveaqi dtsiehtivd
     1141 ppnkaistsk laseaesspc tqvprvtavg mtatsipqqq tcaesssspp avgptlterk
     1201 ldaqgmpttn qfihiqnisq kqaeesssei vvqtiphysi pchsssnvvv epsgllelnn
     1261 ftsqrlddee taveqdvdsg tedgtepsps rssaeqs
//
LOCUS       XP_053930069            1239 aa            linear   VRT 09-MAR-2023
DEFINITION  BRCA2-interacting transcriptional repressor EMSY isoform X5
            [Cuculus canorus].
ACCESSION   XP_053930069
VERSION     XP_053930069.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074094.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1239
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1239
                     /product="BRCA2-interacting transcriptional repressor EMSY
                     isoform X5"
                     /calculated_mol_wt=133259
     Region          17..86
                     /region_name="ENT"
                     /note="ENT domain; pfam03735"
                     /db_xref="CDD:461032"
     Region          <490..592
                     /region_name="COG3889"
                     /note="Extracellular solute-binding protein, contains
                     Ig-fold domain [General function prediction only]"
                     /db_xref="CDD:443097"
     CDS             1..1239
                     /gene="EMSY"
                     /coded_by="XM_054074094.1:180..3899"
                     /db_xref="GeneID:104064129"
ORIGIN      
        1 mpvvwptlld lsrdeckril rkleleayag visalraqgd ltkekkdllg elskvlsist
       61 erhraevrra vnderlttia hnmsgpnsss ewsiegrrlv plmprlvpqt aftvtanava
      121 naavqhnasl pvpaetgnke vvvcysytst tstptstpvp sgsvatvksp rpaspasnvv
      181 vlpsgstvyv ksvscsddde kprkrrrtns sssspvllke vpkavtpvtk titvpvsgsp
      241 kmsnimqsia nslpphmspv kitftkpstq ttntttqkvi ivttspsstf vpnilskshn
      301 yaavtklvpt sviasttqkq pvvitasqss lvsssssssc stpsctanti avtavvsstp
      361 svvmstvaqg vstsaikvas srlpspkglv gnptqilaqf pkqhqqsskq qlhqiqqaqq
      421 qqqqqqqqqq qqqqaqqqqq qqqqqlvqss vaqqqpqqsq lppgikptiq ikqesgvkii
      481 tqqvqpskil pkpvtatlps ssnspimvvs sngtimttkl vttptgtqat ytrptvspsi
      541 garmagtpga atyvkttsgs iitvvpksla tlggkiissn ivsgtttkit tipmtskpnv
      601 ivvqkttgkg ttiqglpgkn vvttllnagg ektiqavpag akpaiitatr pitkmivtqp
      661 kgigstvqpa tkiiptkivy gqqgktqvli kpkpvtfqat vvseqtrqlv tetlqqasrv
      721 aetgnsslpe vkeepqtytd ssssstessq ssqdsqpvvh viasrsqdws eheiavdtsp
      781 tiiyqdvsse sqsatstika llelqqttvk ekleskprqp tidlsqmavp iqmtqekrhs
      841 pespsiavve selvaeyitt dsgrqhcigs hseeylhnhi vshrsqphqq ssqpqrtllq
      901 hvaqsqtatq tsvvvksipa sstgaithim qqalsshtaf tkhseqlgte egeveemdtl
      961 dpqtglfyrs altqsqtqkq qklsqpqleq tqlqvktlqc fqtkqkqtih lqadqiqhkl
     1021 pqmpqlsirh qkltplqqeq aqtkpdaqhp phpmmakerq lptlvaqpqq tvvqvlavkt
     1081 tqqlpklqqa ptaqkiyvqp qppqsqmqlp assekqpasq qqtcaessss ppavgptlte
     1141 rkldaqgmpt tnqfihiqni sqkqaeesss eivvqtiphy sipchsssnv vvepsgllel
     1201 nnftsqrldd eetaveqdvd sgtedgteps psrssaeqs
//
LOCUS       XP_053930083             874 aa            linear   VRT 09-MAR-2023
DEFINITION  rho GTPase-activating protein 42 [Cuculus canorus].
ACCESSION   XP_053930083
VERSION     XP_053930083.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074108.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..874
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..874
                     /product="rho GTPase-activating protein 42"
                     /calculated_mol_wt=98438
     Region          19..225
                     /region_name="BAR_GAP10-like"
                     /note="The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase
                     activating protein 10-like; cd07634"
                     /db_xref="CDD:153318"
     Site            order(28,31..32,36,38..39,42..43,45..46,49..50,52..53,
                     56..57,59..60,63,90,93..94,186,189..190,192,197,200..201,
                     203..204,208..209,212..213,215..216,218..219,221..222)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:153318"
     Region          267..376
                     /region_name="BAR-PH_GRAF_family"
                     /note="GTPase Regulator Associated with Focal adhesion and
                     related proteins Pleckstrin homology (PH) domain; cd01249"
                     /db_xref="CDD:269953"
     Region          369..567
                     /region_name="RhoGAP_Graf"
                     /note="GTPase-activator protein (GAP) domain for Rho-like
                     GTPases found in GRAF (GTPase regulator associated with
                     focal adhesion kinase); Graf is a multi-domain protein,
                     containing SH3 and PH domains, that binds focal adhesion
                     kinase and influences cytoskeletal...; cd04374"
                     /db_xref="CDD:239839"
     Site            order(417,458,462,531,534..535,558)
                     /site_type="other"
                     /note="putative GTPase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:239839"
     Site            417
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239839"
     Region          648..>854
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     Region          820..874
                     /region_name="SH3_GRAF3"
                     /note="Src Homology 3 domain of GTPase Regulator
                     Associated with Focal adhesion kinase 3; cd12066"
                     /db_xref="CDD:212999"
     Site            order(825,827,830,834,853..854,867,869..870)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212999"
     CDS             1..874
                     /gene="ARHGAP42"
                     /coded_by="XM_054074108.1:204..2828"
                     /db_xref="GeneID:104058784"
ORIGIN      
        1 mglptlefsd syldspdfre rlkcheiele rtnkfikeli kdgslligal rnlsmavqkf
       61 sqslqdfqfe cigdaetdde iniaqslkef arlliaveee rrrliqnand vliaplekfr
      121 keqigaakdg kkkfdkesek yysilekhln lsakkkeshl qdadtqidre hqnfyeasle
      181 yvfkiqevqe kkkfefvepl laflqglftf yhegyelaqe fapykqqlqf nlqntrnnfe
      241 strqeverlm qrmksanqdy rppsqwtmeg ylyvqekrpl gftwvkhyct ydkgtktftm
      301 siaetksggk vnglvtsspe ifklkscirr ktdsidkrfc fdievferpg iitlqafses
      361 nrklwleamd gkepiytlpa iiskkeemfl neagfnfvrk cihavetrgi tilglyrigg
      421 vnskvqklmn tvfspksppd mdidmelwdn ktitsglkny lrclseplmt fklhkdfiva
      481 vksddqnyrv eavhalvhkl peknremldi likhlvkvsl hsqqnlmtvs nlgvifgptl
      541 mraqeetvaa mmnikfqniv veiliehyek ifhtapdpni plpqpqsrsg srrtraicls
      601 tgsrkpkgry tpcladpdsd syssspdstp mgsieslssh sseqnsstkc plsqpreksg
      661 gipwiaspts sngqkssglw ttspessske datktdvesd cqsvasvtgp enaspptdlt
      721 kkssyslsgl krssasslrs ipsaegnksc sgsvqslsst dtkdtpklpp npdlppkmcr
      781 rlrldtassn gyqrpgsvva araqlfesag slkqvstgrq akamysckae hshelsfpqg
      841 aifsnvypsv epgwlkatye gktglvpeny vvfl
//
LOCUS       XP_053930095             409 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor ETV6 isoform X1 [Cuculus canorus].
ACCESSION   XP_053930095
VERSION     XP_053930095.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074120.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..409
                     /product="transcription factor ETV6 isoform X1"
                     /calculated_mol_wt=48302
     Region          14..81
                     /region_name="SAM_PNT-Tel_Yan"
                     /note="Sterile alpha motif (SAM)/Pointed domain of Tel/Yan
                     protein; cd08535"
                     /db_xref="CDD:176085"
     Site            order(21,43,46..48,50..51,54,56,58..59,62..63)
                     /site_type="other"
                     /note="oligomer interface ML [polypeptide binding]"
                     /db_xref="CDD:176085"
     Site            order(33..38,65..67,69..70,73..74)
                     /site_type="other"
                     /note="oligomer interface EH [polypeptide binding]"
                     /db_xref="CDD:176085"
     Region          116..>295
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     Region          295..381
                     /region_name="ETS"
                     /note="erythroblast transformation specific domain;
                     smart00413"
                     /db_xref="CDD:197710"
     CDS             1..409
                     /gene="ETV6"
                     /coded_by="XM_054074120.1:110..1339"
                     /db_xref="GeneID:104062836"
ORIGIN      
        1 meeetirlpa hlrlqpvyws rddvaqwlrw aekefslrpi esntfemngk alllltkedf
       61 ryrsphsgdv lyellqhilk qrktrmlftp ffhpgnsiha qpevilhhnn dedsfvqrps
      121 rqstetvhhn pptiellhrs rspitnnhrp spdpdqrplk spmdntirrl spadrvsgtr
      181 hqqennhqes yplsvspven nhcpppsevl qkpssprqen trviqlmpsp imhplilnpr
      241 hsdfkpprls edglhrevkp inlshreela ymnhimvsvs ppedhampig riadcrllwd
      301 yvyqllsdsr yenfirwedk eskifrivdp nglarlwgnh knrtnmtyek msralrhyyk
      361 lniirkepgq rllfrfmktp deimsgrtdr lehlesqeld eqiyqedec
//
LOCUS       XP_053930104             451 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor ETV6 isoform X2 [Cuculus canorus].
ACCESSION   XP_053930104
VERSION     XP_053930104.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074129.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..451
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..451
                     /product="transcription factor ETV6 isoform X2"
                     /calculated_mol_wt=52908
     Region          56..123
                     /region_name="SAM_PNT-Tel_Yan"
                     /note="Sterile alpha motif (SAM)/Pointed domain of Tel/Yan
                     protein; cd08535"
                     /db_xref="CDD:176085"
     Site            order(63,85,88..90,92..93,96,98,100..101,104..105)
                     /site_type="other"
                     /note="oligomer interface ML [polypeptide binding]"
                     /db_xref="CDD:176085"
     Site            order(75..80,107..109,111..112,115..116)
                     /site_type="other"
                     /note="oligomer interface EH [polypeptide binding]"
                     /db_xref="CDD:176085"
     Region          158..>337
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     Region          337..423
                     /region_name="ETS"
                     /note="erythroblast transformation specific domain;
                     smart00413"
                     /db_xref="CDD:197710"
     CDS             1..451
                     /gene="ETV6"
                     /coded_by="XM_054074129.1:136..1491"
                     /db_xref="GeneID:104062836"
ORIGIN      
        1 mseapdqcci kqerisytpp vspapnytss splhvpvpra irmeeetirl pahlrlqpvy
       61 wsrddvaqwl rwaekefslr piesntfemn gkalllltke dfryrsphsg dvlyellqhi
      121 lkqrktrmlf tpffhpgnsi haqpevilhh nndedsfvqr psrqstetvh hnpptiellh
      181 rsrspitnnh rpspdpdqrp lkspmdntir rlspadrvsg trhqqennhq esyplsvspv
      241 ennhcpppse vlqkpssprq entrviqlmp spimhpliln prhsdfkppr lsedglhrev
      301 kpinlshree laymnhimvs vsppedhamp igriadcrll wdyvyqllsd sryenfirwe
      361 dkeskifriv dpnglarlwg nhknrtnmty ekmsralrhy yklniirkep gqrllfrfmk
      421 tpdeimsgrt drlehlesqe ldeqiyqede c
//
LOCUS       XP_053930115             450 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor ETV6 isoform X3 [Cuculus canorus].
ACCESSION   XP_053930115
VERSION     XP_053930115.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074140.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..450
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..450
                     /product="transcription factor ETV6 isoform X3"
                     /calculated_mol_wt=52780
     Region          55..122
                     /region_name="SAM_PNT-Tel_Yan"
                     /note="Sterile alpha motif (SAM)/Pointed domain of Tel/Yan
                     protein; cd08535"
                     /db_xref="CDD:176085"
     Site            order(62,84,87..89,91..92,95,97,99..100,103..104)
                     /site_type="other"
                     /note="oligomer interface ML [polypeptide binding]"
                     /db_xref="CDD:176085"
     Site            order(74..79,106..108,110..111,114..115)
                     /site_type="other"
                     /note="oligomer interface EH [polypeptide binding]"
                     /db_xref="CDD:176085"
     Region          157..>336
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     Region          336..422
                     /region_name="ETS"
                     /note="erythroblast transformation specific domain;
                     smart00413"
                     /db_xref="CDD:197710"
     CDS             1..450
                     /gene="ETV6"
                     /coded_by="XM_054074140.1:136..1488"
                     /db_xref="GeneID:104062836"
ORIGIN      
        1 mseapdqcci kerisytppv spapnytsss plhvpvprai rmeeetirlp ahlrlqpvyw
       61 srddvaqwlr waekefslrp iesntfemng kalllltked fryrsphsgd vlyellqhil
      121 kqrktrmlft pffhpgnsih aqpevilhhn ndedsfvqrp srqstetvhh npptiellhr
      181 srspitnnhr pspdpdqrpl kspmdntirr lspadrvsgt rhqqennhqe syplsvspve
      241 nnhcpppsev lqkpssprqe ntrviqlmps pimhplilnp rhsdfkpprl sedglhrevk
      301 pinlshreel aymnhimvsv sppedhampi griadcrllw dyvyqllsds ryenfirwed
      361 keskifrivd pnglarlwgn hknrtnmtye kmsralrhyy klniirkepg qrllfrfmkt
      421 pdeimsgrtd rlehlesqel deqiyqedec
//
LOCUS       XP_009555125             643 aa            linear   VRT 09-MAR-2023
DEFINITION  mannosyl-oligosaccharide 1,2-alpha-mannosidase IB [Cuculus
            canorus].
ACCESSION   XP_009555125
VERSION     XP_009555125.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556830.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555125.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..643
                     /product="mannosyl-oligosaccharide 1,2-alpha-mannosidase
                     IB"
                     /calculated_mol_wt=72997
     Region          <112..152
                     /region_name="ATP-synt_Fo_b"
                     /note="F-type ATP synthase, membrane subunit b; cl21478"
                     /db_xref="CDD:473877"
     Region          189..628
                     /region_name="Glyco_hydro_47"
                     /note="Glycosyl hydrolase family 47; pfam01532"
                     /db_xref="CDD:460241"
     CDS             1..643
                     /gene="MAN1A2"
                     /coded_by="XM_009556830.2:148..2079"
                     /db_xref="GeneID:104055670"
ORIGIN      
        1 mttpallpls grrlpplnlg gsafphhrat lrlsekfill lilsafitlc fgaffflpds
       61 skhkrfdlgl edvliphvdt srggkdlggf lihglghdeh rhreeeerlr nkiradheka
      121 leeakeklkk srdeiqaeiq teknkvvqel kkkdskplpp vplpnligin sgepedpdir
      181 ekrnkikemm khawdnyrqy gwghnelkpi arkghstnif gnsqlgativ daldtlyimg
      241 lhdefregqe widknldfsv nsevsvfevn irfiggllaa yylsgqevfk ikavqlagkl
      301 lpafntptgi pwamvnlksg vgrnwgwasa gssilaefgt lhmefvhlsy ltgdpvyynk
      361 vmhirkllqk mdrpnglypn ylnprtgrwg qhhtsvgglg dsfyeyllka wlmsdkmdte
      421 arkmyddaie aiekhlirks nggltfigew knghlerkmg hltcfaggmf algadgsrdd
      481 kaghylqlga eiahtchesy drttlklgpe afkfdggvea vavrqnekyy ilrpeviety
      541 wymwrfthdp kyrqwgweaa qaidkycrvs ggfsgvkdvy sssptyddvq qsfflaetlk
      601 ylyllfsndd llpldnwvfn teahplpvlh lanttlsgnp ayr
//
LOCUS       XP_053930148             447 aa            linear   VRT 09-MAR-2023
DEFINITION  PCI domain-containing protein 2 [Cuculus canorus].
ACCESSION   XP_053930148
VERSION     XP_053930148.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074173.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..447
                     /product="PCI domain-containing protein 2"
                     /calculated_mol_wt=51010
     Region          90..396
                     /region_name="PINT"
                     /note="motif in proteasome subunits, Int-6, Nip-1 and
                     TRIP-15; cl02111"
                     /db_xref="CDD:470471"
     CDS             1..447
                     /gene="PCID2"
                     /coded_by="XM_054074173.1:90..1433"
                     /db_xref="GeneID:104056617"
ORIGIN      
        1 mtpgssacpf mahvslnqyl qqvqdtidsr dghffaefvs fkhphvanpr lqlsspeekc
       61 qqlleppyde mlaahlrciy avgnhdfiea ykyqtvlvqs flrafqahke enwalpimya
      121 valdlrvfan nadqqlvkkg kgkvgdmlek aaellmscfr vcasdtragi edskkwgmlf
      181 lvnqlfkiyf kinklhlckp liraidssnl kddysmaqrv tyryyvgrka mfdsdfkqae
      241 eylsfafehc hrssqknkrm iliyllpvkm llghmptiql lkkydlmqfa evtkavsegn
      301 llllndalak hetffircgi flileklkii tyrnlfkkvy lllkthqlsl daflfalkfm
      361 qvddvdidev qcilanliym ghikgyishq hqklvilssa seaasshpkn ivngwfmsri
      421 gipgtvcvsf prvakaasvt kcvgmkc
//
LOCUS       XP_053930157             447 aa            linear   VRT 09-MAR-2023
DEFINITION  PCI domain-containing protein 2 [Cuculus canorus].
ACCESSION   XP_053930157
VERSION     XP_053930157.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074182.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..447
                     /product="PCI domain-containing protein 2"
                     /calculated_mol_wt=51010
     Region          90..396
                     /region_name="PINT"
                     /note="motif in proteasome subunits, Int-6, Nip-1 and
                     TRIP-15; cl02111"
                     /db_xref="CDD:470471"
     CDS             1..447
                     /gene="PCID2"
                     /coded_by="XM_054074182.1:137..1480"
                     /db_xref="GeneID:104056617"
ORIGIN      
        1 mtpgssacpf mahvslnqyl qqvqdtidsr dghffaefvs fkhphvanpr lqlsspeekc
       61 qqlleppyde mlaahlrciy avgnhdfiea ykyqtvlvqs flrafqahke enwalpimya
      121 valdlrvfan nadqqlvkkg kgkvgdmlek aaellmscfr vcasdtragi edskkwgmlf
      181 lvnqlfkiyf kinklhlckp liraidssnl kddysmaqrv tyryyvgrka mfdsdfkqae
      241 eylsfafehc hrssqknkrm iliyllpvkm llghmptiql lkkydlmqfa evtkavsegn
      301 llllndalak hetffircgi flileklkii tyrnlfkkvy lllkthqlsl daflfalkfm
      361 qvddvdidev qcilanliym ghikgyishq hqklvilssa seaasshpkn ivngwfmsri
      421 gipgtvcvsf prvakaasvt kcvgmkc
//
LOCUS       XP_009556172             407 aa            linear   VRT 09-MAR-2023
DEFINITION  vitamin K-dependent protein Z isoform X1 [Cuculus canorus].
ACCESSION   XP_009556172
VERSION     XP_009556172.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557877.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556172.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..407
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..407
                     /product="vitamin K-dependent protein Z isoform X1"
                     /calculated_mol_wt=46260
     Region          21..85
                     /region_name="GLA"
                     /note="Domain containing Gla (gamma-carboxyglutamate)
                     residues; smart00069"
                     /db_xref="CDD:214503"
     Region          90..120
                     /region_name="EGF"
                     /note="EGF-like domain; pfam00008"
                     /db_xref="CDD:394967"
     Region          135..164
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          193..380
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cl21584"
                     /db_xref="CDD:473915"
     CDS             1..407
                     /gene="PROZ"
                     /coded_by="XM_009557877.2:108..1331"
                     /db_xref="GeneID:104056615"
ORIGIN      
        1 marcswtilf llsavflqte qtvfisahda nnvmkrqrrd nsrlleevlq gslereclee
       61 rctreearev fendemlkmf wevyyggrrc ssspcqhngv cednirgytc tcaegyegen
      121 cafaknecrh qgkegchhfc ypgsnsyhcs cadgyelgkd kkqcialdhc acgrlqdtvn
      181 lihktrkkdd epfpwqvlll nserkgfcgg vllksnfvlt taecallhsh feirvgagpn
      241 gtngtekitq vkekhihiry dedtgdnnia llqlqehvec nnhqlpvcip erdfaehili
      301 pklsgtvsgw rmagdelqgd elqvsflpae dckqvlnisl ttrqfcghlq eatdkqlagg
      361 sflateykgt wfltgilgsw pledtdwdtf lftntaryii wfkqkmk
//
LOCUS       XP_053930173             329 aa            linear   VRT 09-MAR-2023
DEFINITION  vitamin K-dependent protein Z isoform X2 [Cuculus canorus].
ACCESSION   XP_053930173
VERSION     XP_053930173.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074198.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..329
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..329
                     /product="vitamin K-dependent protein Z isoform X2"
                     /calculated_mol_wt=37014
     Region          12..42
                     /region_name="EGF"
                     /note="EGF-like domain; pfam00008"
                     /db_xref="CDD:394967"
     Region          57..86
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          115..302
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cl21584"
                     /db_xref="CDD:473915"
     CDS             1..329
                     /gene="PROZ"
                     /coded_by="XM_054074198.1:106..1095"
                     /db_xref="GeneID:104056615"
ORIGIN      
        1 mfwevyyggr rcssspcqhn gvcednirgy tctcaegyeg encafaknec rhqgkegchh
       61 fcypgsnsyh cscadgyelg kdkkqciald hcacgrlqdt vnlihktrkk ddepfpwqvl
      121 llnserkgfc ggvllksnfv lttaecallh shfeirvgag pngtngteki tqvkekhihi
      181 rydedtgdnn iallqlqehv ecnnhqlpvc iperdfaehi lipklsgtvs gwrmagdelq
      241 gdelqvsflp aedckqvlni slttrqfcgh lqeatdkqla ggsflateyk gtwfltgilg
      301 swpledtdwd tflftntary iiwfkqkmk
//
LOCUS       XP_053930179             828 aa            linear   VRT 09-MAR-2023
DEFINITION  85/88 kDa calcium-independent phospholipase A2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053930179
VERSION     XP_053930179.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074204.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..828
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..828
                     /product="85/88 kDa calcium-independent phospholipase A2
                     isoform X1"
                     /calculated_mol_wt=92156
     Region          104..405
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(151,153,157..158,161..163,165..166,170,173,182,184,
                     186,190..191,194..196,198..199,203,206,216,218,220,
                     224..225,228..230,232..233,237,240)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          151..182
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          184..216
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          218..243
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(291..292,295..296,297,301,304,313,315,317,321..322,
                     325..327,329..330,334,337,346,348,350,354..355,358..360,
                     362..363,367,370,379)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          315..346
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          348..379
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          503..816
                     /region_name="Pat_PNPLA9"
                     /note="Patatin-like phospholipase domain containing
                     protein 9; cd07212"
                     /db_xref="CDD:132851"
     Site            order(509..510,512,542,675)
                     /site_type="active"
                     /db_xref="CDD:132851"
     Site            540..544
                     /site_type="other"
                     /note="nucleophile elbow"
                     /db_xref="CDD:132851"
     CDS             1..828
                     /gene="PLA2G6"
                     /coded_by="XM_054074204.1:568..3054"
                     /db_xref="GeneID:104065883"
ORIGIN      
        1 mqffgrlvnt insvtqlfsn pyrvkevpaa eyaahtclqq egrvalykns larswdcvlv
       61 npqspqvafr lfqldneaea lvhfeqyarq lrpfyessqq plsledlqql sdcfrnhpsw
      121 spahvaveig rrenfrhnhv vscvnstdse dgctplhlac rkgdmeclle llecharvdi
      181 tdrngetvfh yavrgnnpqi iellgrspta gldhlnhegl talhlacqlg kedmvrsllk
      241 chascstvgp lgypihtamk fsqkgcaqai levdasqvhs kdlrydaipl hwakkaemtr
      301 llleygsqvn ltsrtadmal hiavkrgrfd camvllthga ntnargqdgn tplhlamkhd
      361 hldmikaivv fggdveipnd fgetpgllaa rsskganrkv lldllqtvgt erchppnpds
      421 pslapsatss flegqpssrs tfnsleykdl lyvsatlgql lkapdvvdmp gegrrkfcqk
      481 lapvpvcspr aavepefssh dcllcldggg irglvliqll laiekaagrp ireifdwiag
      541 tstggilala ivhgksmdym rclyfrmkdm vfrgsrpyes epldeflkke fgentkmtdv
      601 qkpkvmvtgt lcdrqpaelh lfrnypvpet ktsteyktsa sfkpltqped qlvwraarcs
      661 gaaptyfrpi grfldgglla nnptldamae iheynktlik kgqrqkvrkl glvvslgtgk
      721 ppqvpvssvd vfrpsnpwel aktvfgarel gkmvvdcctd adgpavdrar awcemtdipy
      781 frlspqlhte vmldevndtv lvnalwdtql yiyqhreqfq qlvqhlcq
//
LOCUS       XP_053930186             815 aa            linear   VRT 09-MAR-2023
DEFINITION  85/88 kDa calcium-independent phospholipase A2 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053930186
VERSION     XP_053930186.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074211.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..815
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..815
                     /product="85/88 kDa calcium-independent phospholipase A2
                     isoform X2"
                     /calculated_mol_wt=90142
     Region          104..405
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(151,153,157..158,161..163,165..166,170,173,182,184,
                     186,190..191,194..196,198..199,203,206,216,218,220,
                     224..225,228..230,232..233,237,240)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          151..182
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          184..216
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          218..243
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(291..292,295..296,297,301,304,313,315,317,321..322,
                     325..327,329..330,334,337,346,348,350,354..355,358..360,
                     362..363,367,370,379)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          315..346
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          348..379
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          503..782
                     /region_name="Pat_PNPLA9"
                     /note="Patatin-like phospholipase domain containing
                     protein 9; cd07212"
                     /db_xref="CDD:132851"
     Site            order(509..510,512,542,675)
                     /site_type="active"
                     /db_xref="CDD:132851"
     Site            540..544
                     /site_type="other"
                     /note="nucleophile elbow"
                     /db_xref="CDD:132851"
     CDS             1..815
                     /gene="PLA2G6"
                     /coded_by="XM_054074211.1:569..3016"
                     /db_xref="GeneID:104065883"
ORIGIN      
        1 mqffgrlvnt insvtqlfsn pyrvkevpaa eyaahtclqq egrvalykns larswdcvlv
       61 npqspqvafr lfqldneaea lvhfeqyarq lrpfyessqq plsledlqql sdcfrnhpsw
      121 spahvaveig rrenfrhnhv vscvnstdse dgctplhlac rkgdmeclle llecharvdi
      181 tdrngetvfh yavrgnnpqi iellgrspta gldhlnhegl talhlacqlg kedmvrsllk
      241 chascstvgp lgypihtamk fsqkgcaqai levdasqvhs kdlrydaipl hwakkaemtr
      301 llleygsqvn ltsrtadmal hiavkrgrfd camvllthga ntnargqdgn tplhlamkhd
      361 hldmikaivv fggdveipnd fgetpgllaa rsskganrkv lldllqtvgt erchppnpds
      421 pslapsatss flegqpssrs tfnsleykdl lyvsatlgql lkapdvvdmp gegrrkfcqk
      481 lapvpvcspr aavepefssh dcllcldggg irglvliqll laiekaagrp ireifdwiag
      541 tstggilala ivhgksmdym rclyfrmkdm vfrgsrpyes epldeflkke fgentkmtdv
      601 qkpkvmvtgt lcdrqpaelh lfrnypvpet ktsteyktsa sfkpltqped qlvwraarcs
      661 gaaptyfrpi grfldgglla nnptldamae iheynktlik kgqrqkvrkl glvvslgtgk
      721 ppqvpvssvd vfrpsnpwel aktvfgarel gkmvvdcctd adgpavdrar awcemtdipy
      781 frgilslaas efvtgrksgi elletqdctl cvlkk
//
LOCUS       XP_009566711             805 aa            linear   VRT 09-MAR-2023
DEFINITION  85/88 kDa calcium-independent phospholipase A2 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_009566711
VERSION     XP_009566711.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568416.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566711.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..805
                     /product="85/88 kDa calcium-independent phospholipase A2
                     isoform X3"
                     /calculated_mol_wt=89697
     Region          104..405
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(151,153,157..158,161..163,165..166,170,173,182,184,
                     186,190..191,194..196,198..199,203,206,216,218,220,
                     224..225,228..230,232..233,237,240)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          151..182
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          184..216
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          218..243
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(291..292,295..296,297,301,304,313,315,317,321..322,
                     325..327,329..330,334,337,346,348,350,354..355,358..360,
                     362..363,367,370,379)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          315..346
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          348..379
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          480..793
                     /region_name="Pat_PNPLA9"
                     /note="Patatin-like phospholipase domain containing
                     protein 9; cd07212"
                     /db_xref="CDD:132851"
     Site            order(486..487,489,519,652)
                     /site_type="active"
                     /db_xref="CDD:132851"
     Site            517..521
                     /site_type="other"
                     /note="nucleophile elbow"
                     /db_xref="CDD:132851"
     CDS             1..805
                     /gene="PLA2G6"
                     /coded_by="XM_009568416.2:568..2985"
                     /db_xref="GeneID:104065883"
ORIGIN      
        1 mqffgrlvnt insvtqlfsn pyrvkevpaa eyaahtclqq egrvalykns larswdcvlv
       61 npqspqvafr lfqldneaea lvhfeqyarq lrpfyessqq plsledlqql sdcfrnhpsw
      121 spahvaveig rrenfrhnhv vscvnstdse dgctplhlac rkgdmeclle llecharvdi
      181 tdrngetvfh yavrgnnpqi iellgrspta gldhlnhegl talhlacqlg kedmvrsllk
      241 chascstvgp lgypihtamk fsqkgcaqai levdasqvhs kdlrydaipl hwakkaemtr
      301 llleygsqvn ltsrtadmal hiavkrgrfd camvllthga ntnargqdgn tplhlamkhd
      361 hldmikaivv fggdveipnd fgetpgllaa rsskganrkv lldllqtvgt erchppnpds
      421 pslapsatss flegqpssrs tfnsleykdl lyvsatlgql lkapdvvdmp gegrrnhdcl
      481 lcldgggirg lvliqlllai ekaagrpire ifdwiagtst ggilalaivh gksmdymrcl
      541 yfrmkdmvfr gsrpyesepl deflkkefge ntkmtdvqkp kvmvtgtlcd rqpaelhlfr
      601 nypvpetkts teyktsasfk pltqpedqlv wraarcsgaa ptyfrpigrf ldggllannp
      661 tldamaeihe ynktlikkgq rqkvrklglv vslgtgkppq vpvssvdvfr psnpwelakt
      721 vfgarelgkm vvdcctdadg pavdrarawc emtdipyfrl spqlhtevml devndtvlvn
      781 alwdtqlyiy qhreqfqqlv qhlcq
//
LOCUS       XP_053930204             800 aa            linear   VRT 09-MAR-2023
DEFINITION  85/88 kDa calcium-independent phospholipase A2 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053930204
VERSION     XP_053930204.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074229.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..800
                     /product="85/88 kDa calcium-independent phospholipase A2
                     isoform X4"
                     /calculated_mol_wt=88470
     Region          104..405
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(151,153,157..158,161..163,165..166,170,173,182,184,
                     186,190..191,194..196,198..199,203,206,216,218,220,
                     224..225,228..230,232..233,237,240)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          151..182
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          184..216
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          218..243
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(291..292,295..296,297,301,304,313,315,317,321..322,
                     325..327,329..330,334,337,346,348,350,354..355,358..360,
                     362..363,367,370,379)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          315..346
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          348..379
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          503..782
                     /region_name="Pat_PNPLA9"
                     /note="Patatin-like phospholipase domain containing
                     protein 9; cd07212"
                     /db_xref="CDD:132851"
     Site            order(509..510,512,542,675)
                     /site_type="active"
                     /db_xref="CDD:132851"
     Site            540..544
                     /site_type="other"
                     /note="nucleophile elbow"
                     /db_xref="CDD:132851"
     CDS             1..800
                     /gene="PLA2G6"
                     /coded_by="XM_054074229.1:569..2971"
                     /db_xref="GeneID:104065883"
ORIGIN      
        1 mqffgrlvnt insvtqlfsn pyrvkevpaa eyaahtclqq egrvalykns larswdcvlv
       61 npqspqvafr lfqldneaea lvhfeqyarq lrpfyessqq plsledlqql sdcfrnhpsw
      121 spahvaveig rrenfrhnhv vscvnstdse dgctplhlac rkgdmeclle llecharvdi
      181 tdrngetvfh yavrgnnpqi iellgrspta gldhlnhegl talhlacqlg kedmvrsllk
      241 chascstvgp lgypihtamk fsqkgcaqai levdasqvhs kdlrydaipl hwakkaemtr
      301 llleygsqvn ltsrtadmal hiavkrgrfd camvllthga ntnargqdgn tplhlamkhd
      361 hldmikaivv fggdveipnd fgetpgllaa rsskganrkv lldllqtvgt erchppnpds
      421 pslapsatss flegqpssrs tfnsleykdl lyvsatlgql lkapdvvdmp gegrrkfcqk
      481 lapvpvcspr aavepefssh dcllcldggg irglvliqll laiekaagrp ireifdwiag
      541 tstggilala ivhgksmdym rclyfrmkdm vfrgsrpyes epldeflkke fgentkmtdv
      601 qkpkvmvtgt lcdrqpaelh lfrnypvpet ktsteyktsa sfkpltqped qlvwraarcs
      661 gaaptyfrpi grfldgglla nnptldamae iheynktlik kgqrqkvrkl glvvslgtgk
      721 ppqvpvssvd vfrpsnpwel aktvfgarel gkmvvdcctd adgpavdrar awcemtdipy
      781 frgigpddla ssnlkhamil
//
LOCUS       XP_053930220             787 aa            linear   VRT 09-MAR-2023
DEFINITION  85/88 kDa calcium-independent phospholipase A2 isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053930220
VERSION     XP_053930220.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074245.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..787
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..787
                     /product="85/88 kDa calcium-independent phospholipase A2
                     isoform X5"
                     /calculated_mol_wt=87275
     Region          104..405
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(151,153,157..158,161..163,165..166,170,173,182,184,
                     186,190..191,194..196,198..199,203,206,216,218,220,
                     224..225,228..230,232..233,237,240)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          151..182
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          184..216
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          218..243
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(291..292,295..296,297,301,304,313,315,317,321..322,
                     325..327,329..330,334,337,346,348,350,354..355,358..360,
                     362..363,367,370,379)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          315..346
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          348..379
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          503..782
                     /region_name="Pat_PNPLA9"
                     /note="Patatin-like phospholipase domain containing
                     protein 9; cd07212"
                     /db_xref="CDD:132851"
     Site            order(509..510,512,542,675)
                     /site_type="active"
                     /db_xref="CDD:132851"
     Site            540..544
                     /site_type="other"
                     /note="nucleophile elbow"
                     /db_xref="CDD:132851"
     CDS             1..787
                     /gene="PLA2G6"
                     /coded_by="XM_054074245.1:569..2932"
                     /db_xref="GeneID:104065883"
ORIGIN      
        1 mqffgrlvnt insvtqlfsn pyrvkevpaa eyaahtclqq egrvalykns larswdcvlv
       61 npqspqvafr lfqldneaea lvhfeqyarq lrpfyessqq plsledlqql sdcfrnhpsw
      121 spahvaveig rrenfrhnhv vscvnstdse dgctplhlac rkgdmeclle llecharvdi
      181 tdrngetvfh yavrgnnpqi iellgrspta gldhlnhegl talhlacqlg kedmvrsllk
      241 chascstvgp lgypihtamk fsqkgcaqai levdasqvhs kdlrydaipl hwakkaemtr
      301 llleygsqvn ltsrtadmal hiavkrgrfd camvllthga ntnargqdgn tplhlamkhd
      361 hldmikaivv fggdveipnd fgetpgllaa rsskganrkv lldllqtvgt erchppnpds
      421 pslapsatss flegqpssrs tfnsleykdl lyvsatlgql lkapdvvdmp gegrrkfcqk
      481 lapvpvcspr aavepefssh dcllcldggg irglvliqll laiekaagrp ireifdwiag
      541 tstggilala ivhgksmdym rclyfrmkdm vfrgsrpyes epldeflkke fgentkmtdv
      601 qkpkvmvtgt lcdrqpaelh lfrnypvpet ktsteyktsa sfkpltqped qlvwraarcs
      661 gaaptyfrpi grfldgglla nnptldamae iheynktlik kgqrqkvrkl glvvslgtgk
      721 ppqvpvssvd vfrpsnpwel aktvfgarel gkmvvdcctd adgpavdrar awcemtdipy
      781 frkkirn
//
LOCUS       XP_053930228             777 aa            linear   VRT 09-MAR-2023
DEFINITION  85/88 kDa calcium-independent phospholipase A2 isoform X6 [Cuculus
            canorus].
ACCESSION   XP_053930228
VERSION     XP_053930228.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074253.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..777
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..777
                     /product="85/88 kDa calcium-independent phospholipase A2
                     isoform X6"
                     /calculated_mol_wt=86792
     Region          104..414
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(151,153,157..158,161..163,165..166,170,173,182,184,
                     186,190..191,194..196,198..199,203,206,216,218,220,
                     224..225,228..230,232..233,237,240)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          151..182
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          184..216
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          218..243
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(291..292,295..296,297,301,304,313,315,317,321..322,
                     325..327,329..330,334,337,346,348,350,354..355,358..360,
                     362..363,367,370,379)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          315..346
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          348..379
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          452..765
                     /region_name="Pat_PNPLA9"
                     /note="Patatin-like phospholipase domain containing
                     protein 9; cd07212"
                     /db_xref="CDD:132851"
     Site            order(458..459,461,491,624)
                     /site_type="active"
                     /db_xref="CDD:132851"
     Site            489..493
                     /site_type="other"
                     /note="nucleophile elbow"
                     /db_xref="CDD:132851"
     CDS             1..777
                     /gene="PLA2G6"
                     /coded_by="XM_054074253.1:568..2901"
                     /db_xref="GeneID:104065883"
ORIGIN      
        1 mqffgrlvnt insvtqlfsn pyrvkevpaa eyaahtclqq egrvalykns larswdcvlv
       61 npqspqvafr lfqldneaea lvhfeqyarq lrpfyessqq plsledlqql sdcfrnhpsw
      121 spahvaveig rrenfrhnhv vscvnstdse dgctplhlac rkgdmeclle llecharvdi
      181 tdrngetvfh yavrgnnpqi iellgrspta gldhlnhegl talhlacqlg kedmvrsllk
      241 chascstvgp lgypihtamk fsqkgcaqai levdasqvhs kdlrydaipl hwakkaemtr
      301 llleygsqvn ltsrtadmal hiavkrgrfd camvllthga ntnargqdgn tplhlamkhd
      361 hldmikaivv fggdveipnd fgetpgllaa rsskeykdll yvsatlgqll kapdvvdmpg
      421 egrrkfcqkl apvpvcspra avepefsshd cllcldgggi rglvliqlll aiekaagrpi
      481 reifdwiagt stggilalai vhgksmdymr clyfrmkdmv frgsrpyese pldeflkkef
      541 gentkmtdvq kpkvmvtgtl cdrqpaelhl frnypvpetk tsteyktsas fkpltqpedq
      601 lvwraarcsg aaptyfrpig rfldggllan nptldamaei heynktlikk gqrqkvrklg
      661 lvvslgtgkp pqvpvssvdv frpsnpwela ktvfgarelg kmvvdcctda dgpavdrara
      721 wcemtdipyf rlspqlhtev mldevndtvl vnalwdtqly iyqhreqfqq lvqhlcq
//
LOCUS       XP_053930235             754 aa            linear   VRT 09-MAR-2023
DEFINITION  85/88 kDa calcium-independent phospholipase A2 isoform X7 [Cuculus
            canorus].
ACCESSION   XP_053930235
VERSION     XP_053930235.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074260.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..754
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..754
                     /product="85/88 kDa calcium-independent phospholipase A2
                     isoform X7"
                     /calculated_mol_wt=84333
     Region          104..414
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(151,153,157..158,161..163,165..166,170,173,182,184,
                     186,190..191,194..196,198..199,203,206,216,218,220,
                     224..225,228..230,232..233,237,240)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          151..182
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          184..216
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          218..243
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(291..292,295..296,297,301,304,313,315,317,321..322,
                     325..327,329..330,334,337,346,348,350,354..355,358..360,
                     362..363,367,370,379)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          315..346
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          348..379
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          429..742
                     /region_name="Pat_PNPLA9"
                     /note="Patatin-like phospholipase domain containing
                     protein 9; cd07212"
                     /db_xref="CDD:132851"
     Site            order(435..436,438,468,601)
                     /site_type="active"
                     /db_xref="CDD:132851"
     Site            466..470
                     /site_type="other"
                     /note="nucleophile elbow"
                     /db_xref="CDD:132851"
     CDS             1..754
                     /gene="PLA2G6"
                     /coded_by="XM_054074260.1:568..2832"
                     /db_xref="GeneID:104065883"
ORIGIN      
        1 mqffgrlvnt insvtqlfsn pyrvkevpaa eyaahtclqq egrvalykns larswdcvlv
       61 npqspqvafr lfqldneaea lvhfeqyarq lrpfyessqq plsledlqql sdcfrnhpsw
      121 spahvaveig rrenfrhnhv vscvnstdse dgctplhlac rkgdmeclle llecharvdi
      181 tdrngetvfh yavrgnnpqi iellgrspta gldhlnhegl talhlacqlg kedmvrsllk
      241 chascstvgp lgypihtamk fsqkgcaqai levdasqvhs kdlrydaipl hwakkaemtr
      301 llleygsqvn ltsrtadmal hiavkrgrfd camvllthga ntnargqdgn tplhlamkhd
      361 hldmikaivv fggdveipnd fgetpgllaa rsskeykdll yvsatlgqll kapdvvdmpg
      421 egrrnhdcll cldgggirgl vliqlllaie kaagrpirei fdwiagtstg gilalaivhg
      481 ksmdymrcly frmkdmvfrg srpyesepld eflkkefgen tkmtdvqkpk vmvtgtlcdr
      541 qpaelhlfrn ypvpetktst eyktsasfkp ltqpedqlvw raarcsgaap tyfrpigrfl
      601 dggllannpt ldamaeihey nktlikkgqr qkvrklglvv slgtgkppqv pvssvdvfrp
      661 snpwelaktv fgarelgkmv vdcctdadgp avdrarawce mtdipyfrls pqlhtevmld
      721 evndtvlvna lwdtqlyiyq hreqfqqlvq hlcq
//
LOCUS       XP_009566710             494 aa            linear   VRT 09-MAR-2023
DEFINITION  brain-specific angiogenesis inhibitor 1-associated protein 2-like
            protein 2 [Cuculus canorus].
ACCESSION   XP_009566710
VERSION     XP_009566710.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568415.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566710.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..494
                     /product="brain-specific angiogenesis inhibitor
                     1-associated protein 2-like protein 2"
                     /calculated_mol_wt=55608
     Region          2..216
                     /region_name="I-BAR_IMD_BAIAP2L2"
                     /note="Inverse (I)-BAR, also known as the IRSp53/MIM
                     homology Domain (IMD), of Brain-specific Angiogenesis
                     Inhibitor 1-Associated Protein 2-Like 2; cd07644"
                     /db_xref="CDD:153328"
     Site            order(10..11,19,22..23,26,29..30,33,36..37,39..40,44,
                     46..47,50..51,53..54,57..58,67,71,78,81,170,173..174,
                     176..177,180..181,183..184,187..188,191,194..195,198,202,
                     205,212..213,215..216)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:153328"
     Region          328..385
                     /region_name="SH3_BAIAP2L2"
                     /note="Src Homology 3 domain of Brain-specific
                     Angiogenesis Inhibitor 1-Associated Protein 2-Like 2;
                     cd11914"
                     /db_xref="CDD:212847"
     Site            order(332..333,335,342..343,355..356,361..363,365,
                     375..376,378..381)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212847"
     CDS             1..494
                     /gene="BAIAP2L2"
                     /coded_by="XM_009568415.2:204..1688"
                     /db_xref="GeneID:104065882"
ORIGIN      
        1 mdlsyrstis iyksileqfn palenlvylg nnylrafhal skaaevyfka iekigeqalq
       61 sstshvlgei lmqmsdtqrl lssdlevvaq tfhvdllqhm ekntkmdvqf isesqkqyel
      121 eyqrratsld kcmaelwrme rtrdknvrem kenvmrlrse mqafvsesqr eaeleekrry
      181 rflaekhqml yntllqfysr arsmiqtkap lwkeqldasr npsnshsqgl lpashssgyp
      241 sgrlnpthle mpqrplgdfa spmtgsrtsv fspeqpemrl spqpesprrp lrrtpsasll
      301 ptgrtsrsss fgeasgdseg rkrsstarvq aivphvtgan rtllrfdpgd iitvlmpdaq
      361 ngwlygkleg lstcgwfpea yvkpldvrel eepatrsfpl rsshsmddil drpstpsssn
      421 ywpattqssl pnpppllvga snhqsgvatp vssgsrksgv fdqppelfpr gtnpfatvkl
      481 rptvtndrsa piir
//
LOCUS       XP_053930257            2292 aa            linear   VRT 09-MAR-2023
DEFINITION  protein dopey-2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053930257
VERSION     XP_053930257.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074282.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2292
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2292
                     /product="protein dopey-2 isoform X1"
                     /calculated_mol_wt=259023
     Region          11..304
                     /region_name="Dopey_N"
                     /note="Dopey, N-terminal; pfam04118"
                     /db_xref="CDD:461183"
     Region          <1947..2095
                     /region_name="Dopey_N"
                     /note="Dopey, N-terminal; cl04407"
                     /db_xref="CDD:471021"
     CDS             1..2292
                     /gene="DOP1B"
                     /coded_by="XM_054074282.1:315..7193"
                     /db_xref="GeneID:104064740"
ORIGIN      
        1 mdpeeqellg dyryrnyssa iekalrnfes ssewadliss lgklnkalqs nlkysllprr
       61 liiskrlsqc lhpalpsgvh lkaletyeii fkiigtkwla kdlflyssgl fpllanaams
      121 vrpvllglye kyflplqksl lpglqafvig llpgleegse iydrtdtllv klslligqev
      181 fygalwgsvl vspsirlpas lfvvshinre qsgkqqkyml gtdynltvks lcvsvldsnv
      241 lvqrntlevi lfffpfytal dgnestillr rtdliyilsa atqtllrrdm slnrrlyawl
      301 lgsdikggtf apdsttsedh avyffgrysk dllvesliqi lhqkfpesdt eeqhqaylkp
      361 frilislldk peigpqvvgd lflevirafy syckdalgsd lklsynqsgn ilasaikenk
      421 naseivktvn llitslstdf lwdyltkcfe dcfrnkstqk ryplenistp ptiselctll
      481 vflldviple lysevqtqyl pqmlsymvqs llenmevlsl pelthalktc fkvlskvqmp
      541 psyldietgs gngspvkken mditletksa lqeeddtpfp plksedsgig lsasspelsq
      601 hlgmptvtle rddvwkkggs iqktlyciqe lvakfsskyi fgvqfqetsn esisamnldg
      661 kykkengyrl pesagkkksp wdakqitvpq fkqmlsdlfs vrgspfknkt pnphpsghns
      721 snkkekeeed wdleqvmlvl gplrddckea faaachllld cttfpvylse eemeqlylsl
      781 fqipggcdas fplwlkslmt icccvndcyv qnvsiftlle vinhsqslal viedrmkryk
      841 vsghnpffgk lqmvtlppia pgvlkiisek tdfyqrvacv lwnelnketr ehhiacvelf
      901 yrlhclapsa nicediicha lldrdkgtrl ealfrfsvmw hltreiqgsr vtshnrsfdr
      961 slfvvldsln csdgaigaaa qgwliralsl ndvarilepv lllllhpktq rtsihyikqk
     1021 nsaedirdwl gkkkaslkes gisesnseen lplsqfttvd reaiwaevek dpeklelkte
     1081 qsendrscdp vtsheadgdq dnsehtesad tstghdsent ssfspslelq evsseenysa
     1141 asngkettnh vnslnpflpe sskssvalnl vradsertqa seslssdeev dlelqeiths
     1201 rllkqqkekq emiealfkhm llylqpydsk rvlyafsvle avlktnpkef ieavastsmd
     1261 tsstahlnli ynllarhqea lvgqsfygkl qtqsptmcph sllielltyl clsflrsyyp
     1321 cylkvtqrdv lgnrdvqvks vevlirmmtq latmakaaen knmefirsll grckiqefvl
     1381 lslsasmyvs qkryellmad gvnnipeeev feeslinfgh dqiwsehplq iellkllqvl
     1441 ialehhlgqt heeqenqpdl skewqqalnf qqaigamqyv yphpitsqgl fvsavvrglq
     1501 peyghgmhpt wvglvtcslp yfgkslgwtv apfvvqickn ldelvkqyen etvktsakts
     1561 asltskrenv tpdypltlle glttishfcl ldhpnqtkrs pclaepanlr narnaileel
     1621 priintmsll wsvikredsq krptdffgtt kgsssvyfka tktlrtkild finpltaqlg
     1681 iqlmaaiaav wnskkphrnq skikilpvas asqlilvdli calntlkidt ilhlikevvk
     1741 kpsqikgeek sslvdipmlq fnyafiqrlp vsalqenfqs llgllkesvq lnlappghfl
     1801 llstlndfvt rtptlenkkd qkdlqevtqk ileavgtvag ssleqtswls rnlevkaqpq
     1861 ilpddfnied vndtsmapss mvsasapsiy svqalsllae vlaslldmvy rsdekekavp
     1921 lisrllyyvf pylrnhsayn vpsfragaql lsslsgyayt krawkkevle lymdpaffqm
     1981 dtscthwrsi idhllthekt mfkdlmnmps salklypsfe qkamllkrqa favfsgeidq
     2041 yhlylpliqe rltenlrvgq tsivaaqmfl ffrvlllris pqhltslwpi mvteliqtfl
     2101 qleedlteed epsksnskis kqkvsgdgsg tdiqqnelsl ylsackfldt alsfppdrmq
     2161 lfqmykwafv pemdiesstv tshlvenhqe crphiirimd llkmkygetn ntegitkkhk
     2221 cpllnfryis sitqlmpffk tlccafttng nesqnshiqa slsvdyvgsk gikilqqlee
     2281 svecdflenm es
//
LOCUS       XP_053930266            2291 aa            linear   VRT 09-MAR-2023
DEFINITION  protein dopey-2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053930266
VERSION     XP_053930266.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074291.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2291
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2291
                     /product="protein dopey-2 isoform X2"
                     /calculated_mol_wt=258966
     Region          11..304
                     /region_name="Dopey_N"
                     /note="Dopey, N-terminal; pfam04118"
                     /db_xref="CDD:461183"
     Region          <1946..2094
                     /region_name="Dopey_N"
                     /note="Dopey, N-terminal; cl04407"
                     /db_xref="CDD:471021"
     CDS             1..2291
                     /gene="DOP1B"
                     /coded_by="XM_054074291.1:315..7190"
                     /db_xref="GeneID:104064740"
ORIGIN      
        1 mdpeeqellg dyryrnyssa iekalrnfes ssewadliss lgklnkalqs nlkysllprr
       61 liiskrlsqc lhpalpsgvh lkaletyeii fkiigtkwla kdlflyssgl fpllanaams
      121 vrpvllglye kyflplqksl lpglqafvig llpgleegse iydrtdtllv klslligqev
      181 fygalwgsvl vspsirlpas lfvvshinre qsgkqqkyml gtdynltvks lcvsvldsnv
      241 lvqrntlevi lfffpfytal dgnestillr rtdliyilsa atqtllrrdm slnrrlyawl
      301 lgsdikggtf apdsttsedh avyffgrysk dllvesliqi lhqkfpesdt eeqhqaylkp
      361 frilislldk peigpqvvgd lflevirafy syckdalgsd lklsynqsgn ilasaikenk
      421 naseivktvn llitslstdf lwdyltkcfe dcfrnkstqk ryplenistp ptiselctll
      481 vflldviple lysevqtqyl pqmlsymvqs llenmevlsl pelthalktc fkvlskvqmp
      541 psyldietgs gngspvkken mditletksa lqeeddtpfp plksedsgig lsasspelsq
      601 hlgmptvtle rddvwkkggs iqktlyciqe lvakfsskyi fgvqfqetsn esisamnldg
      661 kykkengyrl pesagkkksp wdakqitvpq fkqmlsdlfs vrgspfknkt pnphpsghns
      721 snkkekeeed wdleqvmlvl gplrddckea faaachllld cttfpvylse eemeqlylsl
      781 fqipgcdasf plwlkslmti cccvndcyvq nvsiftllev inhsqslalv iedrmkrykv
      841 sghnpffgkl qmvtlppiap gvlkiisekt dfyqrvacvl wnelnketre hhiacvelfy
      901 rlhclapsan icediichal ldrdkgtrle alfrfsvmwh ltreiqgsrv tshnrsfdrs
      961 lfvvldslnc sdgaigaaaq gwliralsln dvarilepvl llllhpktqr tsihyikqkn
     1021 saedirdwlg kkkaslkesg isesnseenl plsqfttvdr eaiwaevekd peklelkteq
     1081 sendrscdpv tsheadgdqd nsehtesadt stghdsents sfspslelqe vsseenysaa
     1141 sngkettnhv nslnpflpes skssvalnlv radsertqas eslssdeevd lelqeithsr
     1201 llkqqkekqe miealfkhml lylqpydskr vlyafsvlea vlktnpkefi eavastsmdt
     1261 sstahlnliy nllarhqeal vgqsfygklq tqsptmcphs llielltylc lsflrsyypc
     1321 ylkvtqrdvl gnrdvqvksv evlirmmtql atmakaaenk nmefirsllg rckiqefvll
     1381 slsasmyvsq kryellmadg vnnipeeevf eeslinfghd qiwsehplqi ellkllqvli
     1441 alehhlgqth eeqenqpdls kewqqalnfq qaigamqyvy phpitsqglf vsavvrglqp
     1501 eyghgmhptw vglvtcslpy fgkslgwtva pfvvqicknl delvkqyene tvktsaktsa
     1561 sltskrenvt pdypltlleg lttishfcll dhpnqtkrsp claepanlrn arnaileelp
     1621 riintmsllw svikredsqk rptdffgttk gsssvyfkat ktlrtkildf inpltaqlgi
     1681 qlmaaiaavw nskkphrnqs kikilpvasa sqlilvdlic alntlkidti lhlikevvkk
     1741 psqikgeeks slvdipmlqf nyafiqrlpv salqenfqsl lgllkesvql nlappghfll
     1801 lstlndfvtr tptlenkkdq kdlqevtqki leavgtvags sleqtswlsr nlevkaqpqi
     1861 lpddfniedv ndtsmapssm vsasapsiys vqalsllaev laslldmvyr sdekekavpl
     1921 isrllyyvfp ylrnhsaynv psfragaqll sslsgyaytk rawkkevlel ymdpaffqmd
     1981 tscthwrsii dhllthektm fkdlmnmpss alklypsfeq kamllkrqaf avfsgeidqy
     2041 hlylpliqer ltenlrvgqt sivaaqmflf frvlllrisp qhltslwpim vteliqtflq
     2101 leedlteede psksnskisk qkvsgdgsgt diqqnelsly lsackfldta lsfppdrmql
     2161 fqmykwafvp emdiesstvt shlvenhqec rphiirimdl lkmkygetnn tegitkkhkc
     2221 pllnfryiss itqlmpffkt lccafttngn esqnshiqas lsvdyvgskg ikilqqlees
     2281 vecdflenme s
//
LOCUS       XP_053930277             398 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction alpha-8 protein [Cuculus canorus].
ACCESSION   XP_053930277
VERSION     XP_053930277.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074302.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..398
                     /product="gap junction alpha-8 protein"
                     /calculated_mol_wt=45380
     Region          3..231
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     Region          262..326
                     /region_name="Connexin50"
                     /note="Gap junction alpha-8 protein (Cx50); pfam03509"
                     /db_xref="CDD:460951"
     Region          <377..398
                     /region_name="Connexin40_C"
                     /note="Connexin 40 C-terminal domain; cl46284"
                     /db_xref="CDD:480624"
     CDS             1..398
                     /gene="GJA8"
                     /coded_by="XM_054074302.1:4689..5885"
                     /db_xref="GeneID:104055989"
ORIGIN      
        1 mgdwsflgni leqvneqstv igrvwltvlf ifrililgta aelvwgdeqs dfvcntqqpg
       61 cenvcydeaf pishirlwvl qiifvstpsl myfghavhhv rmeekrkere eaerrqqaev
      121 deeklplapn qnkgnnpdga kkfrlegtll rtyifhiifk tlfevgfivg qyflygfril
      181 plyrcgrwpc pnlvdcfvsr ptektifimf mlvvasvslf lnlveishli lkrirkalrr
      241 paeeqlgevp ekplpaitvp sipktkgykl leeekpvshy fpltevgvep splpsaynef
      301 eekigmgple disrafderl psyaqakepe eekvraeeee eeevqpgppe epelkkaeev
      361 vsdevegfsa paeltadmrp lsrlskassr arsddltv
//
LOCUS       XP_053930287             398 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction alpha-8 protein [Cuculus canorus].
ACCESSION   XP_053930287
VERSION     XP_053930287.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074312.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..398
                     /product="gap junction alpha-8 protein"
                     /calculated_mol_wt=45380
     Region          3..231
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     Region          262..326
                     /region_name="Connexin50"
                     /note="Gap junction alpha-8 protein (Cx50); pfam03509"
                     /db_xref="CDD:460951"
     Region          <377..398
                     /region_name="Connexin40_C"
                     /note="Connexin 40 C-terminal domain; cl46284"
                     /db_xref="CDD:480624"
     CDS             1..398
                     /gene="GJA8"
                     /coded_by="XM_054074312.1:4738..5934"
                     /db_xref="GeneID:104055989"
ORIGIN      
        1 mgdwsflgni leqvneqstv igrvwltvlf ifrililgta aelvwgdeqs dfvcntqqpg
       61 cenvcydeaf pishirlwvl qiifvstpsl myfghavhhv rmeekrkere eaerrqqaev
      121 deeklplapn qnkgnnpdga kkfrlegtll rtyifhiifk tlfevgfivg qyflygfril
      181 plyrcgrwpc pnlvdcfvsr ptektifimf mlvvasvslf lnlveishli lkrirkalrr
      241 paeeqlgevp ekplpaitvp sipktkgykl leeekpvshy fpltevgvep splpsaynef
      301 eekigmgple disrafderl psyaqakepe eekvraeeee eeevqpgppe epelkkaeev
      361 vsdevegfsa paeltadmrp lsrlskassr arsddltv
//
LOCUS       XP_053930295             398 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction alpha-8 protein [Cuculus canorus].
ACCESSION   XP_053930295
VERSION     XP_053930295.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074320.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..398
                     /product="gap junction alpha-8 protein"
                     /calculated_mol_wt=45380
     Region          3..231
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     Region          262..326
                     /region_name="Connexin50"
                     /note="Gap junction alpha-8 protein (Cx50); pfam03509"
                     /db_xref="CDD:460951"
     Region          <377..398
                     /region_name="Connexin40_C"
                     /note="Connexin 40 C-terminal domain; cl46284"
                     /db_xref="CDD:480624"
     CDS             1..398
                     /gene="GJA8"
                     /coded_by="XM_054074320.1:936..2132"
                     /db_xref="GeneID:104055989"
ORIGIN      
        1 mgdwsflgni leqvneqstv igrvwltvlf ifrililgta aelvwgdeqs dfvcntqqpg
       61 cenvcydeaf pishirlwvl qiifvstpsl myfghavhhv rmeekrkere eaerrqqaev
      121 deeklplapn qnkgnnpdga kkfrlegtll rtyifhiifk tlfevgfivg qyflygfril
      181 plyrcgrwpc pnlvdcfvsr ptektifimf mlvvasvslf lnlveishli lkrirkalrr
      241 paeeqlgevp ekplpaitvp sipktkgykl leeekpvshy fpltevgvep splpsaynef
      301 eekigmgple disrafderl psyaqakepe eekvraeeee eeevqpgppe epelkkaeev
      361 vsdevegfsa paeltadmrp lsrlskassr arsddltv
//
LOCUS       XP_053930304             398 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction alpha-8 protein [Cuculus canorus].
ACCESSION   XP_053930304
VERSION     XP_053930304.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074329.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..398
                     /product="gap junction alpha-8 protein"
                     /calculated_mol_wt=45380
     Region          3..231
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     Region          262..326
                     /region_name="Connexin50"
                     /note="Gap junction alpha-8 protein (Cx50); pfam03509"
                     /db_xref="CDD:460951"
     Region          <377..398
                     /region_name="Connexin40_C"
                     /note="Connexin 40 C-terminal domain; cl46284"
                     /db_xref="CDD:480624"
     CDS             1..398
                     /gene="GJA8"
                     /coded_by="XM_054074329.1:3462..4658"
                     /db_xref="GeneID:104055989"
ORIGIN      
        1 mgdwsflgni leqvneqstv igrvwltvlf ifrililgta aelvwgdeqs dfvcntqqpg
       61 cenvcydeaf pishirlwvl qiifvstpsl myfghavhhv rmeekrkere eaerrqqaev
      121 deeklplapn qnkgnnpdga kkfrlegtll rtyifhiifk tlfevgfivg qyflygfril
      181 plyrcgrwpc pnlvdcfvsr ptektifimf mlvvasvslf lnlveishli lkrirkalrr
      241 paeeqlgevp ekplpaitvp sipktkgykl leeekpvshy fpltevgvep splpsaynef
      301 eekigmgple disrafderl psyaqakepe eekvraeeee eeevqpgppe epelkkaeev
      361 vsdevegfsa paeltadmrp lsrlskassr arsddltv
//
LOCUS       XP_053930312             398 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction alpha-8 protein [Cuculus canorus].
ACCESSION   XP_053930312
VERSION     XP_053930312.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074337.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..398
                     /product="gap junction alpha-8 protein"
                     /calculated_mol_wt=45380
     Region          3..231
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     Region          262..326
                     /region_name="Connexin50"
                     /note="Gap junction alpha-8 protein (Cx50); pfam03509"
                     /db_xref="CDD:460951"
     Region          <377..398
                     /region_name="Connexin40_C"
                     /note="Connexin 40 C-terminal domain; cl46284"
                     /db_xref="CDD:480624"
     CDS             1..398
                     /gene="GJA8"
                     /coded_by="XM_054074337.1:4466..5662"
                     /db_xref="GeneID:104055989"
ORIGIN      
        1 mgdwsflgni leqvneqstv igrvwltvlf ifrililgta aelvwgdeqs dfvcntqqpg
       61 cenvcydeaf pishirlwvl qiifvstpsl myfghavhhv rmeekrkere eaerrqqaev
      121 deeklplapn qnkgnnpdga kkfrlegtll rtyifhiifk tlfevgfivg qyflygfril
      181 plyrcgrwpc pnlvdcfvsr ptektifimf mlvvasvslf lnlveishli lkrirkalrr
      241 paeeqlgevp ekplpaitvp sipktkgykl leeekpvshy fpltevgvep splpsaynef
      301 eekigmgple disrafderl psyaqakepe eekvraeeee eeevqpgppe epelkkaeev
      361 vsdevegfsa paeltadmrp lsrlskassr arsddltv
//
LOCUS       XP_053930321             398 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction alpha-8 protein [Cuculus canorus].
ACCESSION   XP_053930321
VERSION     XP_053930321.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074346.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..398
                     /product="gap junction alpha-8 protein"
                     /calculated_mol_wt=45380
     Region          3..231
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     Region          262..326
                     /region_name="Connexin50"
                     /note="Gap junction alpha-8 protein (Cx50); pfam03509"
                     /db_xref="CDD:460951"
     Region          <377..398
                     /region_name="Connexin40_C"
                     /note="Connexin 40 C-terminal domain; cl46284"
                     /db_xref="CDD:480624"
     CDS             1..398
                     /gene="GJA8"
                     /coded_by="XM_054074346.1:3413..4609"
                     /db_xref="GeneID:104055989"
ORIGIN      
        1 mgdwsflgni leqvneqstv igrvwltvlf ifrililgta aelvwgdeqs dfvcntqqpg
       61 cenvcydeaf pishirlwvl qiifvstpsl myfghavhhv rmeekrkere eaerrqqaev
      121 deeklplapn qnkgnnpdga kkfrlegtll rtyifhiifk tlfevgfivg qyflygfril
      181 plyrcgrwpc pnlvdcfvsr ptektifimf mlvvasvslf lnlveishli lkrirkalrr
      241 paeeqlgevp ekplpaitvp sipktkgykl leeekpvshy fpltevgvep splpsaynef
      301 eekigmgple disrafderl psyaqakepe eekvraeeee eeevqpgppe epelkkaeev
      361 vsdevegfsa paeltadmrp lsrlskassr arsddltv
//
LOCUS       XP_053930330             398 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction alpha-8 protein [Cuculus canorus].
ACCESSION   XP_053930330
VERSION     XP_053930330.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074355.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..398
                     /product="gap junction alpha-8 protein"
                     /calculated_mol_wt=45380
     Region          3..231
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     Region          262..326
                     /region_name="Connexin50"
                     /note="Gap junction alpha-8 protein (Cx50); pfam03509"
                     /db_xref="CDD:460951"
     Region          <377..398
                     /region_name="Connexin40_C"
                     /note="Connexin 40 C-terminal domain; cl46284"
                     /db_xref="CDD:480624"
     CDS             1..398
                     /gene="GJA8"
                     /coded_by="XM_054074355.1:731..1927"
                     /db_xref="GeneID:104055989"
ORIGIN      
        1 mgdwsflgni leqvneqstv igrvwltvlf ifrililgta aelvwgdeqs dfvcntqqpg
       61 cenvcydeaf pishirlwvl qiifvstpsl myfghavhhv rmeekrkere eaerrqqaev
      121 deeklplapn qnkgnnpdga kkfrlegtll rtyifhiifk tlfevgfivg qyflygfril
      181 plyrcgrwpc pnlvdcfvsr ptektifimf mlvvasvslf lnlveishli lkrirkalrr
      241 paeeqlgevp ekplpaitvp sipktkgykl leeekpvshy fpltevgvep splpsaynef
      301 eekigmgple disrafderl psyaqakepe eekvraeeee eeevqpgppe epelkkaeev
      361 vsdevegfsa paeltadmrp lsrlskassr arsddltv
//
LOCUS       XP_053930339             398 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction alpha-8 protein [Cuculus canorus].
ACCESSION   XP_053930339
VERSION     XP_053930339.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074364.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..398
                     /product="gap junction alpha-8 protein"
                     /calculated_mol_wt=45380
     Region          3..231
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     Region          262..326
                     /region_name="Connexin50"
                     /note="Gap junction alpha-8 protein (Cx50); pfam03509"
                     /db_xref="CDD:460951"
     Region          <377..398
                     /region_name="Connexin40_C"
                     /note="Connexin 40 C-terminal domain; cl46284"
                     /db_xref="CDD:480624"
     CDS             1..398
                     /gene="GJA8"
                     /coded_by="XM_054074364.1:598..1794"
                     /db_xref="GeneID:104055989"
ORIGIN      
        1 mgdwsflgni leqvneqstv igrvwltvlf ifrililgta aelvwgdeqs dfvcntqqpg
       61 cenvcydeaf pishirlwvl qiifvstpsl myfghavhhv rmeekrkere eaerrqqaev
      121 deeklplapn qnkgnnpdga kkfrlegtll rtyifhiifk tlfevgfivg qyflygfril
      181 plyrcgrwpc pnlvdcfvsr ptektifimf mlvvasvslf lnlveishli lkrirkalrr
      241 paeeqlgevp ekplpaitvp sipktkgykl leeekpvshy fpltevgvep splpsaynef
      301 eekigmgple disrafderl psyaqakepe eekvraeeee eeevqpgppe epelkkaeev
      361 vsdevegfsa paeltadmrp lsrlskassr arsddltv
//
LOCUS       XP_053930344             398 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction alpha-8 protein [Cuculus canorus].
ACCESSION   XP_053930344
VERSION     XP_053930344.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074369.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..398
                     /product="gap junction alpha-8 protein"
                     /calculated_mol_wt=45380
     Region          3..231
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     Region          262..326
                     /region_name="Connexin50"
                     /note="Gap junction alpha-8 protein (Cx50); pfam03509"
                     /db_xref="CDD:460951"
     Region          <377..398
                     /region_name="Connexin40_C"
                     /note="Connexin 40 C-terminal domain; cl46284"
                     /db_xref="CDD:480624"
     CDS             1..398
                     /gene="GJA8"
                     /coded_by="XM_054074369.1:4430..5626"
                     /db_xref="GeneID:104055989"
ORIGIN      
        1 mgdwsflgni leqvneqstv igrvwltvlf ifrililgta aelvwgdeqs dfvcntqqpg
       61 cenvcydeaf pishirlwvl qiifvstpsl myfghavhhv rmeekrkere eaerrqqaev
      121 deeklplapn qnkgnnpdga kkfrlegtll rtyifhiifk tlfevgfivg qyflygfril
      181 plyrcgrwpc pnlvdcfvsr ptektifimf mlvvasvslf lnlveishli lkrirkalrr
      241 paeeqlgevp ekplpaitvp sipktkgykl leeekpvshy fpltevgvep splpsaynef
      301 eekigmgple disrafderl psyaqakepe eekvraeeee eeevqpgppe epelkkaeev
      361 vsdevegfsa paeltadmrp lsrlskassr arsddltv
//
LOCUS       XP_053930349             398 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction alpha-8 protein [Cuculus canorus].
ACCESSION   XP_053930349
VERSION     XP_053930349.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074374.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..398
                     /product="gap junction alpha-8 protein"
                     /calculated_mol_wt=45380
     Region          3..231
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     Region          262..326
                     /region_name="Connexin50"
                     /note="Gap junction alpha-8 protein (Cx50); pfam03509"
                     /db_xref="CDD:460951"
     Region          <377..398
                     /region_name="Connexin40_C"
                     /note="Connexin 40 C-terminal domain; cl46284"
                     /db_xref="CDD:480624"
     CDS             1..398
                     /gene="GJA8"
                     /coded_by="XM_054074374.1:4324..5520"
                     /db_xref="GeneID:104055989"
ORIGIN      
        1 mgdwsflgni leqvneqstv igrvwltvlf ifrililgta aelvwgdeqs dfvcntqqpg
       61 cenvcydeaf pishirlwvl qiifvstpsl myfghavhhv rmeekrkere eaerrqqaev
      121 deeklplapn qnkgnnpdga kkfrlegtll rtyifhiifk tlfevgfivg qyflygfril
      181 plyrcgrwpc pnlvdcfvsr ptektifimf mlvvasvslf lnlveishli lkrirkalrr
      241 paeeqlgevp ekplpaitvp sipktkgykl leeekpvshy fpltevgvep splpsaynef
      301 eekigmgple disrafderl psyaqakepe eekvraeeee eeevqpgppe epelkkaeev
      361 vsdevegfsa paeltadmrp lsrlskassr arsddltv
//
LOCUS       XP_053930353             398 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction alpha-8 protein [Cuculus canorus].
ACCESSION   XP_053930353
VERSION     XP_053930353.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074378.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..398
                     /product="gap junction alpha-8 protein"
                     /calculated_mol_wt=45380
     Region          3..231
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     Region          262..326
                     /region_name="Connexin50"
                     /note="Gap junction alpha-8 protein (Cx50); pfam03509"
                     /db_xref="CDD:460951"
     Region          <377..398
                     /region_name="Connexin40_C"
                     /note="Connexin 40 C-terminal domain; cl46284"
                     /db_xref="CDD:480624"
     CDS             1..398
                     /gene="GJA8"
                     /coded_by="XM_054074378.1:234..1430"
                     /db_xref="GeneID:104055989"
ORIGIN      
        1 mgdwsflgni leqvneqstv igrvwltvlf ifrililgta aelvwgdeqs dfvcntqqpg
       61 cenvcydeaf pishirlwvl qiifvstpsl myfghavhhv rmeekrkere eaerrqqaev
      121 deeklplapn qnkgnnpdga kkfrlegtll rtyifhiifk tlfevgfivg qyflygfril
      181 plyrcgrwpc pnlvdcfvsr ptektifimf mlvvasvslf lnlveishli lkrirkalrr
      241 paeeqlgevp ekplpaitvp sipktkgykl leeekpvshy fpltevgvep splpsaynef
      301 eekigmgple disrafderl psyaqakepe eekvraeeee eeevqpgppe epelkkaeev
      361 vsdevegfsa paeltadmrp lsrlskassr arsddltv
//
LOCUS       XP_053930361             398 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction alpha-8 protein [Cuculus canorus].
ACCESSION   XP_053930361
VERSION     XP_053930361.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074386.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..398
                     /product="gap junction alpha-8 protein"
                     /calculated_mol_wt=45380
     Region          3..231
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     Region          262..326
                     /region_name="Connexin50"
                     /note="Gap junction alpha-8 protein (Cx50); pfam03509"
                     /db_xref="CDD:460951"
     Region          <377..398
                     /region_name="Connexin40_C"
                     /note="Connexin 40 C-terminal domain; cl46284"
                     /db_xref="CDD:480624"
     CDS             1..398
                     /gene="GJA8"
                     /coded_by="XM_054074386.1:164..1360"
                     /db_xref="GeneID:104055989"
ORIGIN      
        1 mgdwsflgni leqvneqstv igrvwltvlf ifrililgta aelvwgdeqs dfvcntqqpg
       61 cenvcydeaf pishirlwvl qiifvstpsl myfghavhhv rmeekrkere eaerrqqaev
      121 deeklplapn qnkgnnpdga kkfrlegtll rtyifhiifk tlfevgfivg qyflygfril
      181 plyrcgrwpc pnlvdcfvsr ptektifimf mlvvasvslf lnlveishli lkrirkalrr
      241 paeeqlgevp ekplpaitvp sipktkgykl leeekpvshy fpltevgvep splpsaynef
      301 eekigmgple disrafderl psyaqakepe eekvraeeee eeevqpgppe epelkkaeev
      361 vsdevegfsa paeltadmrp lsrlskassr arsddltv
//
LOCUS       XP_053930371             398 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction alpha-8 protein [Cuculus canorus].
ACCESSION   XP_053930371
VERSION     XP_053930371.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074396.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..398
                     /product="gap junction alpha-8 protein"
                     /calculated_mol_wt=45380
     Region          3..231
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     Region          262..326
                     /region_name="Connexin50"
                     /note="Gap junction alpha-8 protein (Cx50); pfam03509"
                     /db_xref="CDD:460951"
     Region          <377..398
                     /region_name="Connexin40_C"
                     /note="Connexin 40 C-terminal domain; cl46284"
                     /db_xref="CDD:480624"
     CDS             1..398
                     /gene="GJA8"
                     /coded_by="XM_054074396.1:145..1341"
                     /db_xref="GeneID:104055989"
ORIGIN      
        1 mgdwsflgni leqvneqstv igrvwltvlf ifrililgta aelvwgdeqs dfvcntqqpg
       61 cenvcydeaf pishirlwvl qiifvstpsl myfghavhhv rmeekrkere eaerrqqaev
      121 deeklplapn qnkgnnpdga kkfrlegtll rtyifhiifk tlfevgfivg qyflygfril
      181 plyrcgrwpc pnlvdcfvsr ptektifimf mlvvasvslf lnlveishli lkrirkalrr
      241 paeeqlgevp ekplpaitvp sipktkgykl leeekpvshy fpltevgvep splpsaynef
      301 eekigmgple disrafderl psyaqakepe eekvraeeee eeevqpgppe epelkkaeev
      361 vsdevegfsa paeltadmrp lsrlskassr arsddltv
//
LOCUS       XP_053930381             398 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction alpha-8 protein [Cuculus canorus].
ACCESSION   XP_053930381
VERSION     XP_053930381.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074406.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..398
                     /product="gap junction alpha-8 protein"
                     /calculated_mol_wt=45380
     Region          3..231
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     Region          262..326
                     /region_name="Connexin50"
                     /note="Gap junction alpha-8 protein (Cx50); pfam03509"
                     /db_xref="CDD:460951"
     Region          <377..398
                     /region_name="Connexin40_C"
                     /note="Connexin 40 C-terminal domain; cl46284"
                     /db_xref="CDD:480624"
     CDS             1..398
                     /gene="GJA8"
                     /coded_by="XM_054074406.1:4686..5882"
                     /db_xref="GeneID:104055989"
ORIGIN      
        1 mgdwsflgni leqvneqstv igrvwltvlf ifrililgta aelvwgdeqs dfvcntqqpg
       61 cenvcydeaf pishirlwvl qiifvstpsl myfghavhhv rmeekrkere eaerrqqaev
      121 deeklplapn qnkgnnpdga kkfrlegtll rtyifhiifk tlfevgfivg qyflygfril
      181 plyrcgrwpc pnlvdcfvsr ptektifimf mlvvasvslf lnlveishli lkrirkalrr
      241 paeeqlgevp ekplpaitvp sipktkgykl leeekpvshy fpltevgvep splpsaynef
      301 eekigmgple disrafderl psyaqakepe eekvraeeee eeevqpgppe epelkkaeev
      361 vsdevegfsa paeltadmrp lsrlskassr arsddltv
//
LOCUS       XP_009555485             369 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction alpha-5 protein [Cuculus canorus].
ACCESSION   XP_009555485
VERSION     XP_009555485.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557190.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..369
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..369
                     /product="gap junction alpha-5 protein"
                     /calculated_mol_wt=41535
     Region          3..236
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     Region          266..369
                     /region_name="Connexin40_C"
                     /note="Connexin 40 C-terminal domain; pfam16791"
                     /db_xref="CDD:465272"
     CDS             1..369
                     /gene="GJA5"
                     /coded_by="XM_009557190.2:243..1352"
                     /db_xref="GeneID:104055988"
ORIGIN      
        1 mgdwsflgef leevhkhstv vgkvwltvlf ifrmlvlgta aesswgdeqs dfmcdtqqpg
       61 cenvcydkaf pishvrfwvl qiifvstpsl vymghamhtv rmeekrkmke aeieaqemkn
      121 ngdtyyqqkc pvaektelsc wdesggkiil rgsllntyvy silirtamev afivgqyily
      181 gifletlyic qrapcphpvn cyvsrptekn vfiifmlsva vlslflslae lyhlgwkkak
      241 ercsrsykps pstapgrles apqveraqmy tpppdfnqcl sspngkfisp fsnkmasqqn
      301 tanfatervh sqedaagegs fikssyvesp eaandsaapa fpenyfnekr rlsktsrass
      361 karsddlsv
//
LOCUS       XP_053930405             369 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction alpha-5 protein [Cuculus canorus].
ACCESSION   XP_053930405
VERSION     XP_053930405.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074430.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..369
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..369
                     /product="gap junction alpha-5 protein"
                     /calculated_mol_wt=41535
     Region          3..236
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     Region          266..369
                     /region_name="Connexin40_C"
                     /note="Connexin 40 C-terminal domain; pfam16791"
                     /db_xref="CDD:465272"
     CDS             1..369
                     /gene="GJA5"
                     /coded_by="XM_054074430.1:361..1470"
                     /db_xref="GeneID:104055988"
ORIGIN      
        1 mgdwsflgef leevhkhstv vgkvwltvlf ifrmlvlgta aesswgdeqs dfmcdtqqpg
       61 cenvcydkaf pishvrfwvl qiifvstpsl vymghamhtv rmeekrkmke aeieaqemkn
      121 ngdtyyqqkc pvaektelsc wdesggkiil rgsllntyvy silirtamev afivgqyily
      181 gifletlyic qrapcphpvn cyvsrptekn vfiifmlsva vlslflslae lyhlgwkkak
      241 ercsrsykps pstapgrles apqveraqmy tpppdfnqcl sspngkfisp fsnkmasqqn
      301 tanfatervh sqedaagegs fikssyvesp eaandsaapa fpenyfnekr rlsktsrass
      361 karsddlsv
//
LOCUS       XP_053930409             369 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction alpha-5 protein [Cuculus canorus].
ACCESSION   XP_053930409
VERSION     XP_053930409.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074434.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..369
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..369
                     /product="gap junction alpha-5 protein"
                     /calculated_mol_wt=41535
     Region          3..236
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     Region          266..369
                     /region_name="Connexin40_C"
                     /note="Connexin 40 C-terminal domain; pfam16791"
                     /db_xref="CDD:465272"
     CDS             1..369
                     /gene="GJA5"
                     /coded_by="XM_054074434.1:367..1476"
                     /db_xref="GeneID:104055988"
ORIGIN      
        1 mgdwsflgef leevhkhstv vgkvwltvlf ifrmlvlgta aesswgdeqs dfmcdtqqpg
       61 cenvcydkaf pishvrfwvl qiifvstpsl vymghamhtv rmeekrkmke aeieaqemkn
      121 ngdtyyqqkc pvaektelsc wdesggkiil rgsllntyvy silirtamev afivgqyily
      181 gifletlyic qrapcphpvn cyvsrptekn vfiifmlsva vlslflslae lyhlgwkkak
      241 ercsrsykps pstapgrles apqveraqmy tpppdfnqcl sspngkfisp fsnkmasqqn
      301 tanfatervh sqedaagegs fikssyvesp eaandsaapa fpenyfnekr rlsktsrass
      361 karsddlsv
//
LOCUS       XP_053930416             369 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction alpha-5 protein [Cuculus canorus].
ACCESSION   XP_053930416
VERSION     XP_053930416.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074441.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..369
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..369
                     /product="gap junction alpha-5 protein"
                     /calculated_mol_wt=41535
     Region          3..236
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     Region          266..369
                     /region_name="Connexin40_C"
                     /note="Connexin 40 C-terminal domain; pfam16791"
                     /db_xref="CDD:465272"
     CDS             1..369
                     /gene="GJA5"
                     /coded_by="XM_054074441.1:186..1295"
                     /db_xref="GeneID:104055988"
ORIGIN      
        1 mgdwsflgef leevhkhstv vgkvwltvlf ifrmlvlgta aesswgdeqs dfmcdtqqpg
       61 cenvcydkaf pishvrfwvl qiifvstpsl vymghamhtv rmeekrkmke aeieaqemkn
      121 ngdtyyqqkc pvaektelsc wdesggkiil rgsllntyvy silirtamev afivgqyily
      181 gifletlyic qrapcphpvn cyvsrptekn vfiifmlsva vlslflslae lyhlgwkkak
      241 ercsrsykps pstapgrles apqveraqmy tpppdfnqcl sspngkfisp fsnkmasqqn
      301 tanfatervh sqedaagegs fikssyvesp eaandsaapa fpenyfnekr rlsktsrass
      361 karsddlsv
//
LOCUS       XP_053930421             369 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction alpha-5 protein [Cuculus canorus].
ACCESSION   XP_053930421
VERSION     XP_053930421.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074446.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..369
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..369
                     /product="gap junction alpha-5 protein"
                     /calculated_mol_wt=41535
     Region          3..236
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     Region          266..369
                     /region_name="Connexin40_C"
                     /note="Connexin 40 C-terminal domain; pfam16791"
                     /db_xref="CDD:465272"
     CDS             1..369
                     /gene="GJA5"
                     /coded_by="XM_054074446.1:206..1315"
                     /db_xref="GeneID:104055988"
ORIGIN      
        1 mgdwsflgef leevhkhstv vgkvwltvlf ifrmlvlgta aesswgdeqs dfmcdtqqpg
       61 cenvcydkaf pishvrfwvl qiifvstpsl vymghamhtv rmeekrkmke aeieaqemkn
      121 ngdtyyqqkc pvaektelsc wdesggkiil rgsllntyvy silirtamev afivgqyily
      181 gifletlyic qrapcphpvn cyvsrptekn vfiifmlsva vlslflslae lyhlgwkkak
      241 ercsrsykps pstapgrles apqveraqmy tpppdfnqcl sspngkfisp fsnkmasqqn
      301 tanfatervh sqedaagegs fikssyvesp eaandsaapa fpenyfnekr rlsktsrass
      361 karsddlsv
//
LOCUS       XP_053930433            1380 aa            linear   VRT 09-MAR-2023
DEFINITION  protein SCAF11 isoform X1 [Cuculus canorus].
ACCESSION   XP_053930433
VERSION     XP_053930433.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074458.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1380
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1380
                     /product="protein SCAF11 isoform X1"
                     /calculated_mol_wt=154882
     Region          38..89
                     /region_name="mRING-HC-C3HC3D_SCAF11"
                     /note="Modified RING finger, HC subclass (C3HC3D-type),
                     found in SR-related and CTD-associated factor 11 (SCAF11)
                     and similar proteins; cd16636"
                     /db_xref="CDD:438298"
     Region          716..>807
                     /region_name="U2AF_lg"
                     /note="U2 snRNP auxilliary factor, large subunit, splicing
                     factor; TIGR01642"
                     /db_xref="CDD:273727"
     Region          <1114..1238
                     /region_name="PABP-1234"
                     /note="polyadenylate binding protein, human types 1, 2, 3,
                     4 family; TIGR01628"
                     /db_xref="CDD:130689"
     CDS             1..1380
                     /gene="SCAF11"
                     /coded_by="XM_054074458.1:228..4370"
                     /db_xref="GeneID:104062411"
ORIGIN      
        1 mknrkqciqd tegqkhegme gedneescsc savlyggdtc piclnclleq eigfpencsh
       61 tfcmtcilkw aetqascpid rrpfqavcrl dalerqvkvq vkkqlrrkee eencacnkgk
      121 yshaqmrsyv rravcpdrgr lttklskvvk kkysnilydk rnkkslsvki nkprrqtcwn
      181 ecfrtnlfst llasgisees ffscrndcte ftefnatirq krqelelscs svlarvervp
      241 lisygaeaet flltsttvag tvlptnirpl enfeslskgy avactqegee kkqasgssga
      301 rggrrksant tprrrsarns knetlgqsrt spcssssacs asdgsnssls kspsesekap
      361 pkrksrkivk qqtpvvkknl rssarstkps sdsvedddia eseavrtldk eqqsdnessn
      421 tnlpqknnae tesanglesc sehaeveett gecdkdedts gdtdasfsvq elsvltsere
      481 sqeleaedvt ekkvehkdyd icentleqme tvasprgdvc dhaaaekvdl alcslqnefm
      541 ekeetltkvd qpiaspenel leyteplgkd ealestrsel peipeaieid nseaeektav
      601 dcgstnsqnl ktfqdeepdt lidnasmvst seqslkenam peseeggtse sppanaehkh
      661 fgednnemip mdcdsfcsdq nepqieplpp vesiekvgvn slqcdvgnct svsglpdekd
      721 gtvpqerecq aelkkdkktr trrsrfhsps ttwspsrreg rksqspspkr emardrtsrs
      781 pkkeivrerk rslshspkre tlknekktps rspkreavre srrssrsrtr gssprqksrs
      841 qssdrdsqrr drdrerrnrr wsrsrsrsrs rsrsrtrskg ssfsrnerds hsprwkerwt
      901 ndswgsprgn dryrrsdedk qneshkkedn teknsdeqcs sdkwrndcpd wvmerinsvp
      961 earnrerekp hwedsrhdna ghswnknfgs swipnrgrgh rgrggrgrgs fmygdqsenh
     1021 wqsrkplsgn sngsgnetsr fsehqpykrk neqdysfdtp adrsgwtsas swavrktlpa
     1081 dvqnyysrrg rnssspqtgw gmrqeetaeq dpnlkdqgnq qsdgsqlpin mmqqqmnvmp
     1141 qvnaqhqpmn mfpypvgvhp pmmnmqqnpf nihppvpmhl ptgmpliqva aptnlsqglp
     1201 ppppppppsq qvnyiatqqd akqlqsipna ahvsnnmsap alpaptavlg nvgtvqgpss
     1261 gnatssshvk ssnaavklge nkasvtveas adsskkdqkl liqekaaqev klaikpfyqn
     1321 kditkeeyke ivrkavdkvc hsksgevnsa kvanlvkayv dkykhtrkkn peeavsserk
//
LOCUS       XP_053930438            1343 aa            linear   VRT 09-MAR-2023
DEFINITION  protein SCAF11 isoform X2 [Cuculus canorus].
ACCESSION   XP_053930438
VERSION     XP_053930438.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074463.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1343
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1343
                     /product="protein SCAF11 isoform X2"
                     /calculated_mol_wt=151010
     Region          38..89
                     /region_name="mRING-HC-C3HC3D_SCAF11"
                     /note="Modified RING finger, HC subclass (C3HC3D-type),
                     found in SR-related and CTD-associated factor 11 (SCAF11)
                     and similar proteins; cd16636"
                     /db_xref="CDD:438298"
     Region          716..>807
                     /region_name="U2AF_lg"
                     /note="U2 snRNP auxilliary factor, large subunit, splicing
                     factor; TIGR01642"
                     /db_xref="CDD:273727"
     Region          <1126..1206
                     /region_name="Amelogenin"
                     /note="Amelogenins, cell adhesion proteins, play a role in
                     the biomineralisation of teeth; smart00818"
                     /db_xref="CDD:197891"
     CDS             1..1343
                     /gene="SCAF11"
                     /coded_by="XM_054074463.1:145..4176"
                     /db_xref="GeneID:104062411"
ORIGIN      
        1 mknrkqciqd tegqkhegme gedneescsc savlyggdtc piclnclleq eigfpencsh
       61 tfcmtcilkw aetqascpid rrpfqavcrl dalerqvkvq vkkqlrrkee eencacnkgk
      121 yshaqmrsyv rravcpdrgr lttklskvvk kkysnilydk rnkkslsvki nkprrqtcwn
      181 ecfrtnlfst llasgisees ffscrndcte ftefnatirq krqelelscs svlarvervp
      241 lisygaeaet flltsttvag tvlptnirpl enfeslskgy avactqegee kkqasgssga
      301 rggrrksant tprrrsarns knetlgqsrt spcssssacs asdgsnssls kspsesekap
      361 pkrksrkivk qqtpvvkknl rssarstkps sdsvedddia eseavrtldk eqqsdnessn
      421 tnlpqknnae tesanglesc sehaeveett gecdkdedts gdtdasfsvq elsvltsere
      481 sqeleaedvt ekkvehkdyd icentleqme tvasprgdvc dhaaaekvdl alcslqnefm
      541 ekeetltkvd qpiaspenel leyteplgkd ealestrsel peipeaieid nseaeektav
      601 dcgstnsqnl ktfqdeepdt lidnasmvst seqslkenam peseeggtse sppanaehkh
      661 fgednnemip mdcdsfcsdq nepqieplpp vesiekvgvn slqcdvgnct svsglpdekd
      721 gtvpqerecq aelkkdkktr trrsrfhsps ttwspsrreg rksqspspkr emardrtsrs
      781 pkkeivrerk rslshspkre tlknekktps rspkreavre srrssrsrtr gssprqksrs
      841 qssdrdsqrr drdrerrnrr wsrsrsrsrs rsrsrtrskg ssfsrnerds hsprwkerwt
      901 ndswgsprgn dryrrsdedk qneshkkedn teknsdeqcs sdkwrndcpd wvmerinsvp
      961 earnrerekp hwedsrhdna ghswnknfgs swipnrgrgh rgrggrgrgs fmygdqsenh
     1021 wqsrkplsgn sngsgnetsr fsehqpykrk neqdysfdtp adrsgwtsas swavrktlpa
     1081 dvqnyysrrg rnssspqtgw gmrqeetaeq dpnlkdqgnq qsdgsqlpin mmqqqmnvmp
     1141 qvnaqhqpmn mfpypvgvhp pmmnmqqnpf nihppvpmhl ptgmpliqsi pnaahvsnnm
     1201 sapalpapta vlgnvgtvqg pssgnatsss hvkssnaavk lgenkasvtv easadsskkd
     1261 qklliqekaa qevklaikpf yqnkditkee ykeivrkavd kvchsksgev nsakvanlvk
     1321 ayvdkykhtr kknpeeavss erk
//
LOCUS       XP_053930449            1380 aa            linear   VRT 09-MAR-2023
DEFINITION  protein SCAF11 isoform X1 [Cuculus canorus].
ACCESSION   XP_053930449
VERSION     XP_053930449.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074474.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1380
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1380
                     /product="protein SCAF11 isoform X1"
                     /calculated_mol_wt=154882
     Region          38..89
                     /region_name="mRING-HC-C3HC3D_SCAF11"
                     /note="Modified RING finger, HC subclass (C3HC3D-type),
                     found in SR-related and CTD-associated factor 11 (SCAF11)
                     and similar proteins; cd16636"
                     /db_xref="CDD:438298"
     Region          716..>807
                     /region_name="U2AF_lg"
                     /note="U2 snRNP auxilliary factor, large subunit, splicing
                     factor; TIGR01642"
                     /db_xref="CDD:273727"
     Region          <1114..1238
                     /region_name="PABP-1234"
                     /note="polyadenylate binding protein, human types 1, 2, 3,
                     4 family; TIGR01628"
                     /db_xref="CDD:130689"
     CDS             1..1380
                     /gene="SCAF11"
                     /coded_by="XM_054074474.1:152..4294"
                     /db_xref="GeneID:104062411"
ORIGIN      
        1 mknrkqciqd tegqkhegme gedneescsc savlyggdtc piclnclleq eigfpencsh
       61 tfcmtcilkw aetqascpid rrpfqavcrl dalerqvkvq vkkqlrrkee eencacnkgk
      121 yshaqmrsyv rravcpdrgr lttklskvvk kkysnilydk rnkkslsvki nkprrqtcwn
      181 ecfrtnlfst llasgisees ffscrndcte ftefnatirq krqelelscs svlarvervp
      241 lisygaeaet flltsttvag tvlptnirpl enfeslskgy avactqegee kkqasgssga
      301 rggrrksant tprrrsarns knetlgqsrt spcssssacs asdgsnssls kspsesekap
      361 pkrksrkivk qqtpvvkknl rssarstkps sdsvedddia eseavrtldk eqqsdnessn
      421 tnlpqknnae tesanglesc sehaeveett gecdkdedts gdtdasfsvq elsvltsere
      481 sqeleaedvt ekkvehkdyd icentleqme tvasprgdvc dhaaaekvdl alcslqnefm
      541 ekeetltkvd qpiaspenel leyteplgkd ealestrsel peipeaieid nseaeektav
      601 dcgstnsqnl ktfqdeepdt lidnasmvst seqslkenam peseeggtse sppanaehkh
      661 fgednnemip mdcdsfcsdq nepqieplpp vesiekvgvn slqcdvgnct svsglpdekd
      721 gtvpqerecq aelkkdkktr trrsrfhsps ttwspsrreg rksqspspkr emardrtsrs
      781 pkkeivrerk rslshspkre tlknekktps rspkreavre srrssrsrtr gssprqksrs
      841 qssdrdsqrr drdrerrnrr wsrsrsrsrs rsrsrtrskg ssfsrnerds hsprwkerwt
      901 ndswgsprgn dryrrsdedk qneshkkedn teknsdeqcs sdkwrndcpd wvmerinsvp
      961 earnrerekp hwedsrhdna ghswnknfgs swipnrgrgh rgrggrgrgs fmygdqsenh
     1021 wqsrkplsgn sngsgnetsr fsehqpykrk neqdysfdtp adrsgwtsas swavrktlpa
     1081 dvqnyysrrg rnssspqtgw gmrqeetaeq dpnlkdqgnq qsdgsqlpin mmqqqmnvmp
     1141 qvnaqhqpmn mfpypvgvhp pmmnmqqnpf nihppvpmhl ptgmpliqva aptnlsqglp
     1201 ppppppppsq qvnyiatqqd akqlqsipna ahvsnnmsap alpaptavlg nvgtvqgpss
     1261 gnatssshvk ssnaavklge nkasvtveas adsskkdqkl liqekaaqev klaikpfyqn
     1321 kditkeeyke ivrkavdkvc hsksgevnsa kvanlvkayv dkykhtrkkn peeavsserk
//
LOCUS       XP_053930457            1380 aa            linear   VRT 09-MAR-2023
DEFINITION  protein SCAF11 isoform X1 [Cuculus canorus].
ACCESSION   XP_053930457
VERSION     XP_053930457.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074482.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1380
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1380
                     /product="protein SCAF11 isoform X1"
                     /calculated_mol_wt=154882
     Region          38..89
                     /region_name="mRING-HC-C3HC3D_SCAF11"
                     /note="Modified RING finger, HC subclass (C3HC3D-type),
                     found in SR-related and CTD-associated factor 11 (SCAF11)
                     and similar proteins; cd16636"
                     /db_xref="CDD:438298"
     Region          716..>807
                     /region_name="U2AF_lg"
                     /note="U2 snRNP auxilliary factor, large subunit, splicing
                     factor; TIGR01642"
                     /db_xref="CDD:273727"
     Region          <1114..1238
                     /region_name="PABP-1234"
                     /note="polyadenylate binding protein, human types 1, 2, 3,
                     4 family; TIGR01628"
                     /db_xref="CDD:130689"
     CDS             1..1380
                     /gene="SCAF11"
                     /coded_by="XM_054074482.1:144..4286"
                     /db_xref="GeneID:104062411"
ORIGIN      
        1 mknrkqciqd tegqkhegme gedneescsc savlyggdtc piclnclleq eigfpencsh
       61 tfcmtcilkw aetqascpid rrpfqavcrl dalerqvkvq vkkqlrrkee eencacnkgk
      121 yshaqmrsyv rravcpdrgr lttklskvvk kkysnilydk rnkkslsvki nkprrqtcwn
      181 ecfrtnlfst llasgisees ffscrndcte ftefnatirq krqelelscs svlarvervp
      241 lisygaeaet flltsttvag tvlptnirpl enfeslskgy avactqegee kkqasgssga
      301 rggrrksant tprrrsarns knetlgqsrt spcssssacs asdgsnssls kspsesekap
      361 pkrksrkivk qqtpvvkknl rssarstkps sdsvedddia eseavrtldk eqqsdnessn
      421 tnlpqknnae tesanglesc sehaeveett gecdkdedts gdtdasfsvq elsvltsere
      481 sqeleaedvt ekkvehkdyd icentleqme tvasprgdvc dhaaaekvdl alcslqnefm
      541 ekeetltkvd qpiaspenel leyteplgkd ealestrsel peipeaieid nseaeektav
      601 dcgstnsqnl ktfqdeepdt lidnasmvst seqslkenam peseeggtse sppanaehkh
      661 fgednnemip mdcdsfcsdq nepqieplpp vesiekvgvn slqcdvgnct svsglpdekd
      721 gtvpqerecq aelkkdkktr trrsrfhsps ttwspsrreg rksqspspkr emardrtsrs
      781 pkkeivrerk rslshspkre tlknekktps rspkreavre srrssrsrtr gssprqksrs
      841 qssdrdsqrr drdrerrnrr wsrsrsrsrs rsrsrtrskg ssfsrnerds hsprwkerwt
      901 ndswgsprgn dryrrsdedk qneshkkedn teknsdeqcs sdkwrndcpd wvmerinsvp
      961 earnrerekp hwedsrhdna ghswnknfgs swipnrgrgh rgrggrgrgs fmygdqsenh
     1021 wqsrkplsgn sngsgnetsr fsehqpykrk neqdysfdtp adrsgwtsas swavrktlpa
     1081 dvqnyysrrg rnssspqtgw gmrqeetaeq dpnlkdqgnq qsdgsqlpin mmqqqmnvmp
     1141 qvnaqhqpmn mfpypvgvhp pmmnmqqnpf nihppvpmhl ptgmpliqva aptnlsqglp
     1201 ppppppppsq qvnyiatqqd akqlqsipna ahvsnnmsap alpaptavlg nvgtvqgpss
     1261 gnatssshvk ssnaavklge nkasvtveas adsskkdqkl liqekaaqev klaikpfyqn
     1321 kditkeeyke ivrkavdkvc hsksgevnsa kvanlvkayv dkykhtrkkn peeavsserk
//
LOCUS       XP_009556942             384 aa            linear   VRT 09-MAR-2023
DEFINITION  G-protein coupled receptor 183 [Cuculus canorus].
ACCESSION   XP_009556942
VERSION     XP_009556942.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009558647.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556942.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..384
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..384
                     /product="G-protein coupled receptor 183"
                     /calculated_mol_wt=43819
     Region          51..335
                     /region_name="7tmA_EBI2"
                     /note="Epstein-Barr virus (EBV)-induced gene 2, member of
                     the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15159"
                     /db_xref="CDD:320287"
     Region          51..78
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320287"
     Region          85..110
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320287"
     Site            order(106,109..110,123..128,130..131,134,178,180..184,211,
                     214..216,218..220,222..223,275,278..279,281..282,285,
                     302..303,305..307,310,313..314)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320287"
     Region          123..153
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320287"
     Region          164..186
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320287"
     Region          211..240
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320287"
     Region          255..285
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320287"
     Region          303..328
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320287"
     CDS             1..384
                     /gene="LOC104057301"
                     /coded_by="XM_009558647.2:251..1405"
                     /db_xref="GeneID:104057301"
ORIGIN      
        1 mlltaqriqg atdmstelpa ttmvtemdtf tvsqknsstc dlyehkdtar illsvfysfi
       61 lilgvlgnai altvifknrk kinsttlyst nlvfsdllfc ialptriayy aqgfhwpfge
      121 alcritallf yintyagvnf mtclsidrff avvhpfryki rrikyakgic ifiwflvfsq
      181 tfplliqpms qeekerttcm eypnfekiah lpfillaacl vgyliplgii lfcysqisck
      241 lfqtakenpl teksginkka intiifvivv fiicftpyhv aiiqhmikkl qnepsctetk
      301 ifqkslhytv flmnfnccld pfiyffackg ykrtvmkilr rqvslsissa arshheessr
      361 evgetqmtvl akssngklpe kqsl
//
LOCUS       XP_053930485             347 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin-associated domain-containing protein 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053930485
VERSION     XP_053930485.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074510.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..347
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..347
                     /product="ubiquitin-associated domain-containing protein 2
                     isoform X1"
                     /calculated_mol_wt=39805
     CDS             1..347
                     /gene="UBAC2"
                     /coded_by="XM_054074510.1:119..1162"
                     /db_xref="GeneID:104057309"
ORIGIN      
        1 mftstgssgl ykaplsksll lvpsaisill tllfqhyqkf faynlqaike efqiwrlvcg
       61 rticldlkdt fcsslliynf riferrygsr kfssfllgaw mlsalfdlll veiaqyifgi
      121 tinslpsgfl gpvfalfvpf yssiprvqva qvlghfsitn ktlvyilglq lltsgsyiwi
      181 lalsglvsgi cynssilkvh rilcvpswva rifswtlepv fssseptnev rvgmgatvdi
      241 qrqqrmelld rqimmsqvaq mrqqrqqqqd gminwnrlfp plrhrhnany qdrrpseqdt
      301 ppptevseeq qhklgyqitv ttqrrqivig hchptqsyks twefplf
//
LOCUS       XP_053930492             345 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin-associated domain-containing protein 2 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053930492
VERSION     XP_053930492.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074517.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..345
                     /product="ubiquitin-associated domain-containing protein 2
                     isoform X2"
                     /calculated_mol_wt=39251
     Region          306..343
                     /region_name="UBA_UBAC2"
                     /note="UBA domain found in ubiquitin-associated
                     domain-containing protein 2 (UBAC2) and similar proteins;
                     cd14305"
                     /db_xref="CDD:270490"
     CDS             1..345
                     /gene="UBAC2"
                     /coded_by="XM_054074517.1:119..1156"
                     /db_xref="GeneID:104057309"
ORIGIN      
        1 mftstgssgl ykaplsksll lvpsaisill tllfqhyqkf faynlqaike efqiwrlvcg
       61 rticldlkdt fcsslliynf riferrygsr kfssfllgaw mlsalfdlll veiaqyifgi
      121 tinslpsgfl gpvfalfvpf yssiprvqva qvlghfsitn ktlvyilglq lltsgsyiwi
      181 lalsglvsgi cynssilkvh rilcvpswva rifswtlepv fssseptnev rvgmgatvdi
      241 qrqqrmelld rqimmsqvaq mrqqrqqqqd gminwnrlfp plrhrhnany qdrrpseqdt
      301 ppptevseeq varlmemgfs rgdalealra snndlnvatn fllqh
//
LOCUS       XP_053930503             321 aa            linear   VRT 09-MAR-2023
DEFINITION  N-arachidonyl glycine receptor [Cuculus canorus].
ACCESSION   XP_053930503
VERSION     XP_053930503.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074528.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..321
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..321
                     /product="N-arachidonyl glycine receptor"
                     /calculated_mol_wt=36917
     Region          13..287
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          15..39
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          48..69
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          85..107
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          130..146
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          175..198
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          221..243
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          255..280
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..321
                     /gene="GPR18"
                     /coded_by="XM_054074528.1:159..1124"
                     /db_xref="GeneID:104057298"
ORIGIN      
        1 mtpgndhpee yriaslvfys fvftvgllvn atalwvfsct tkkrttitvy mmnvalldii
       61 fifslpfrii yhgtkmwpfg dtfcriagaf tifypaialw llafisvdrf maivqpkhvk
      121 elkntkkavl acigiwvmtl attspllflq sdpdkhsnft tcmkildivh lkevntlnfs
      181 rliffflipl fimmgcylvi iynfirgrts klkpkakers iriivtliaq vltcfvpfhi
      241 cfaflmlqda dttynpwaaf ttflmnlstc ldvilyyivs kqfqarvisv ilyrnylrsv
      301 rrksfrtgsv mslsnmnsem i
//
LOCUS       XP_053930510             321 aa            linear   VRT 09-MAR-2023
DEFINITION  N-arachidonyl glycine receptor [Cuculus canorus].
ACCESSION   XP_053930510
VERSION     XP_053930510.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074535.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..321
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..321
                     /product="N-arachidonyl glycine receptor"
                     /calculated_mol_wt=36917
     Region          13..287
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          15..39
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          48..69
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          85..107
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          130..146
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          175..198
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          221..243
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          255..280
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..321
                     /gene="GPR18"
                     /coded_by="XM_054074535.1:754..1719"
                     /db_xref="GeneID:104057298"
ORIGIN      
        1 mtpgndhpee yriaslvfys fvftvgllvn atalwvfsct tkkrttitvy mmnvalldii
       61 fifslpfrii yhgtkmwpfg dtfcriagaf tifypaialw llafisvdrf maivqpkhvk
      121 elkntkkavl acigiwvmtl attspllflq sdpdkhsnft tcmkildivh lkevntlnfs
      181 rliffflipl fimmgcylvi iynfirgrts klkpkakers iriivtliaq vltcfvpfhi
      241 cfaflmlqda dttynpwaaf ttflmnlstc ldvilyyivs kqfqarvisv ilyrnylrsv
      301 rrksfrtgsv mslsnmnsem i
//
LOCUS       XP_053930515             321 aa            linear   VRT 09-MAR-2023
DEFINITION  N-arachidonyl glycine receptor [Cuculus canorus].
ACCESSION   XP_053930515
VERSION     XP_053930515.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074540.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..321
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..321
                     /product="N-arachidonyl glycine receptor"
                     /calculated_mol_wt=36917
     Region          13..287
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          15..39
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          48..69
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          85..107
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          130..146
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          175..198
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          221..243
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          255..280
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..321
                     /gene="GPR18"
                     /coded_by="XM_054074540.1:758..1723"
                     /db_xref="GeneID:104057298"
ORIGIN      
        1 mtpgndhpee yriaslvfys fvftvgllvn atalwvfsct tkkrttitvy mmnvalldii
       61 fifslpfrii yhgtkmwpfg dtfcriagaf tifypaialw llafisvdrf maivqpkhvk
      121 elkntkkavl acigiwvmtl attspllflq sdpdkhsnft tcmkildivh lkevntlnfs
      181 rliffflipl fimmgcylvi iynfirgrts klkpkakers iriivtliaq vltcfvpfhi
      241 cfaflmlqda dttynpwaaf ttflmnlstc ldvilyyivs kqfqarvisv ilyrnylrsv
      301 rrksfrtgsv mslsnmnsem i
//
LOCUS       XP_053930521             321 aa            linear   VRT 09-MAR-2023
DEFINITION  N-arachidonyl glycine receptor [Cuculus canorus].
ACCESSION   XP_053930521
VERSION     XP_053930521.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074546.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..321
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..321
                     /product="N-arachidonyl glycine receptor"
                     /calculated_mol_wt=36917
     Region          13..287
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          15..39
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          48..69
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          85..107
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          130..146
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          175..198
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          221..243
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          255..280
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..321
                     /gene="GPR18"
                     /coded_by="XM_054074546.1:143..1108"
                     /db_xref="GeneID:104057298"
ORIGIN      
        1 mtpgndhpee yriaslvfys fvftvgllvn atalwvfsct tkkrttitvy mmnvalldii
       61 fifslpfrii yhgtkmwpfg dtfcriagaf tifypaialw llafisvdrf maivqpkhvk
      121 elkntkkavl acigiwvmtl attspllflq sdpdkhsnft tcmkildivh lkevntlnfs
      181 rliffflipl fimmgcylvi iynfirgrts klkpkakers iriivtliaq vltcfvpfhi
      241 cfaflmlqda dttynpwaaf ttflmnlstc ldvilyyivs kqfqarvisv ilyrnylrsv
      301 rrksfrtgsv mslsnmnsem i
//
LOCUS       XP_053930528             804 aa            linear   VRT 09-MAR-2023
DEFINITION  smoothened homolog [Cuculus canorus].
ACCESSION   XP_053930528
VERSION     XP_053930528.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074553.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..804
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..804
                     /product="smoothened homolog"
                     /calculated_mol_wt=88850
     Region          44..174
                     /region_name="CRD_SMO"
                     /note="Cysteine-rich domain of the smoothened receptor
                     (Smo) integral membrane protein; cd07451"
                     /db_xref="CDD:143560"
     Site            order(55,57..58,63..65)
                     /site_type="other"
                     /note="putative Wnt binding site [polypeptide binding]"
                     /db_xref="CDD:143560"
     Region          198..528
                     /region_name="7tmF_SMO_homolog"
                     /note="class F smoothened family membrane region, a
                     homolog of frizzled receptors; cd15030"
                     /db_xref="CDD:320158"
     Site            order(199,208,259,279,362,364..365,367,369,372,378,455,
                     458..459,462,491,496,499..500)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:320158"
     Region          207..232
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320158"
     Region          242..263
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320158"
     Region          293..319
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320158"
     Region          337..353
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320158"
     Region          375..404
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320158"
     Region          426..453
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320158"
     Region          489..514
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320158"
     CDS             1..804
                     /gene="SMO"
                     /coded_by="XM_054074553.1:88..2502"
                     /db_xref="GeneID:104061377"
ORIGIN      
        1 maarrspsgm aarralpall alpallalpg appngsavpe hcrrpapcer lrrgaclgsa
       61 lpyaatstll aadsasqeea hgklllwsgl rnaprcwdai qpllcavymp kcedghvelp
      121 sqslcqatra pctivererg wpdflkctld rfpegcpnev qnikfnssgq ceaplvrtdn
      181 pkswyedveg cgiqcqnplf tetehremhv yiaafssvti fctfftlatf ladwrnsnry
      241 pavilfyvna cffvgsigwl aqfmdgarde ivcradgtmr lgeptsnetl scviifvivy
      301 yslmsgviwf vmltyawhts fralgtthqp llgktsyfhl itwsipfvlt vailavaqvd
      361 gdsvsgicfv gyknyryrag fvlapiglvl ivggyflirg vmtlfsiksn hpgllsekaa
      421 skinetmlrl gifgflafgf vfitfgchfy dffnqaewer sfreyvlcea nvtiatqtnk
      481 pipdceiknr psllvekinl famfgtgvsm stwvwtkatl liwkrtwcrl tgqsddqpkr
      541 ikkskmiaka fskrkellrd pgrelsfsmh tvshdgpvag lvfdinepsa dmssawaqhv
      601 tkmvarrgai lpqdvsvtpv atpvppeert nlwvveadis pelqkrsshk kkrrkkkkke
      661 vspdpehclg gptaplapst vpclprlppq pclvtfapdv llglppgqpe avcagapwds
      721 crranvfhlv snpfcpesgn teqespgpsr grwqhnggpl wppdpgllph grapwtqgrr
      781 aglapihsrt nlvdaelldp dsdf
//
LOCUS       XP_053930542             772 aa            linear   VRT 09-MAR-2023
DEFINITION  protection of telomeres protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053930542
VERSION     XP_053930542.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074567.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..772
                     /product="protection of telomeres protein 1 isoform X1"
                     /calculated_mol_wt=87084
     Region          155..284
                     /region_name="Telo_bind"
                     /note="Telomeric single stranded DNA binding POT1/CDC13;
                     smart00976"
                     /db_xref="CDD:214949"
     Site            order(168,222,224,226,248)
                     /site_type="active"
                     /note="generic binding surface II [active]"
                     /db_xref="CDD:239943"
     Site            order(175..178,180,192,214,216,218..219,253)
                     /site_type="other"
                     /note="OB1/OB2 interface [polypeptide binding]"
                     /db_xref="CDD:239943"
     Site            order(177,180,182,186,192,204,206,208,231,233,238)
                     /site_type="other"
                     /note="ssDNA binding site [nucleotide binding]"
                     /db_xref="CDD:239943"
     Region          305..420
                     /region_name="hPOT1_OB2"
                     /note="A subfamily of OB folds similar to the second OB
                     fold (OB2) of human protection of telomeres 1 protein
                     (hPOT1). POT1 proteins bind to the single-stranded (ss)
                     3-prime ends of the telomere. hPOT1 binds specifically to
                     ss telomeric DNA repeats ending with...; cd04498"
                     /db_xref="CDD:239944"
     Site            order(305,367..368,387,389,408..409,412..413,415)
                     /site_type="other"
                     /note="ssDNA binding [nucleotide binding]"
                     /db_xref="CDD:239944"
     Site            order(384,386,411,414,418)
                     /site_type="active"
                     /note="binding surface II [active]"
                     /db_xref="CDD:239944"
     Region          479..767
                     /region_name="Pot1C"
                     /note="Protection Of Telomeres Protein 1 (POT1) C-terminal
                     region; cd20374"
                     /db_xref="CDD:380669"
     Site            order(479,500,507,584,611,613,670,673,710,725,729,761)
                     /site_type="other"
                     /note="disease mutation sites"
                     /db_xref="CDD:380669"
     Site            order(507,509..512,515,522,524,526..527,529,556,558,
                     560..562,568,574,583..585,598,601..602,605..606,681..683,
                     698,700,711..712,715,718,746,748,750,757,759,761)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:380669"
     CDS             1..772
                     /gene="POT1"
                     /coded_by="XM_054074567.1:313..2631"
                     /db_xref="GeneID:104055284"
ORIGIN      
        1 mpvrllktvs gksetplpsh lqkedlkhlq egfdhtnkyf kgvvvlsypl mklgdgtdff
       61 kvvlqdldnw isrnnsinil lygkmaedca kvtrhgdtfa vagfkvaksp taredgrhgc
      121 hlevseeags tiyiytvsst vsetasvsva pkyvytplnr lkdgtvvnly gvvkffkppy
      181 vskgtdycsv vtlvdpsnvk ltctlfngnl dflpkiykvg divrfhriki reyngqmqgi
      241 tsagfasltf dgtvgapvvp rtsskvytfm deeqkiieel rvwadsnlci fgpaaklagv
      301 qpmiffdltc qlvgkakvdg ssfllkvwdg tkcpyptwkv pveardlege ktllhqlrnl
      361 tvdilvydnh vqlakslkig sflriysiht kqassdkddv sciefhlhgg tcygrgigvl
      421 petnpdvkel kvflgsvdla dsqnmesmss leldstdles hlqrcqelsv tvltdhqdlk
      481 dtelktilns rapqqyrira klrtyepqkl yqciklhcsk cnslwevpgg ddfdlilqgs
      541 avtapnlelh ntswydsvmw ttedqkqrki tihfvkhdem vqqpedtlim ieggtlkeiw
      601 kltkrfkcvi pvrsteddle lldlsapfll qgnikyygcm rcstpkpiec lssiaaeqqp
      661 swepteiarv lgieplqyvf vmkftlvdgt gtlnaylfdy ekffqipase iltnnflqqk
      721 mqmtmntlcp pgrklddlpw lecfiksynv rdvmkqqvyy qifdttvaed vv
//
LOCUS       XP_053930547             772 aa            linear   VRT 09-MAR-2023
DEFINITION  protection of telomeres protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053930547
VERSION     XP_053930547.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074572.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..772
                     /product="protection of telomeres protein 1 isoform X1"
                     /calculated_mol_wt=87084
     Region          155..284
                     /region_name="Telo_bind"
                     /note="Telomeric single stranded DNA binding POT1/CDC13;
                     smart00976"
                     /db_xref="CDD:214949"
     Site            order(168,222,224,226,248)
                     /site_type="active"
                     /note="generic binding surface II [active]"
                     /db_xref="CDD:239943"
     Site            order(175..178,180,192,214,216,218..219,253)
                     /site_type="other"
                     /note="OB1/OB2 interface [polypeptide binding]"
                     /db_xref="CDD:239943"
     Site            order(177,180,182,186,192,204,206,208,231,233,238)
                     /site_type="other"
                     /note="ssDNA binding site [nucleotide binding]"
                     /db_xref="CDD:239943"
     Region          305..420
                     /region_name="hPOT1_OB2"
                     /note="A subfamily of OB folds similar to the second OB
                     fold (OB2) of human protection of telomeres 1 protein
                     (hPOT1). POT1 proteins bind to the single-stranded (ss)
                     3-prime ends of the telomere. hPOT1 binds specifically to
                     ss telomeric DNA repeats ending with...; cd04498"
                     /db_xref="CDD:239944"
     Site            order(305,367..368,387,389,408..409,412..413,415)
                     /site_type="other"
                     /note="ssDNA binding [nucleotide binding]"
                     /db_xref="CDD:239944"
     Site            order(384,386,411,414,418)
                     /site_type="active"
                     /note="binding surface II [active]"
                     /db_xref="CDD:239944"
     Region          479..767
                     /region_name="Pot1C"
                     /note="Protection Of Telomeres Protein 1 (POT1) C-terminal
                     region; cd20374"
                     /db_xref="CDD:380669"
     Site            order(479,500,507,584,611,613,670,673,710,725,729,761)
                     /site_type="other"
                     /note="disease mutation sites"
                     /db_xref="CDD:380669"
     Site            order(507,509..512,515,522,524,526..527,529,556,558,
                     560..562,568,574,583..585,598,601..602,605..606,681..683,
                     698,700,711..712,715,718,746,748,750,757,759,761)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:380669"
     CDS             1..772
                     /gene="POT1"
                     /coded_by="XM_054074572.1:129..2447"
                     /db_xref="GeneID:104055284"
ORIGIN      
        1 mpvrllktvs gksetplpsh lqkedlkhlq egfdhtnkyf kgvvvlsypl mklgdgtdff
       61 kvvlqdldnw isrnnsinil lygkmaedca kvtrhgdtfa vagfkvaksp taredgrhgc
      121 hlevseeags tiyiytvsst vsetasvsva pkyvytplnr lkdgtvvnly gvvkffkppy
      181 vskgtdycsv vtlvdpsnvk ltctlfngnl dflpkiykvg divrfhriki reyngqmqgi
      241 tsagfasltf dgtvgapvvp rtsskvytfm deeqkiieel rvwadsnlci fgpaaklagv
      301 qpmiffdltc qlvgkakvdg ssfllkvwdg tkcpyptwkv pveardlege ktllhqlrnl
      361 tvdilvydnh vqlakslkig sflriysiht kqassdkddv sciefhlhgg tcygrgigvl
      421 petnpdvkel kvflgsvdla dsqnmesmss leldstdles hlqrcqelsv tvltdhqdlk
      481 dtelktilns rapqqyrira klrtyepqkl yqciklhcsk cnslwevpgg ddfdlilqgs
      541 avtapnlelh ntswydsvmw ttedqkqrki tihfvkhdem vqqpedtlim ieggtlkeiw
      601 kltkrfkcvi pvrsteddle lldlsapfll qgnikyygcm rcstpkpiec lssiaaeqqp
      661 swepteiarv lgieplqyvf vmkftlvdgt gtlnaylfdy ekffqipase iltnnflqqk
      721 mqmtmntlcp pgrklddlpw lecfiksynv rdvmkqqvyy qifdttvaed vv
//
LOCUS       XP_053930556             673 aa            linear   VRT 09-MAR-2023
DEFINITION  protection of telomeres protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053930556
VERSION     XP_053930556.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074581.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..673
                     /product="protection of telomeres protein 1 isoform X2"
                     /calculated_mol_wt=75439
     Region          155..284
                     /region_name="Telo_bind"
                     /note="Telomeric single stranded DNA binding POT1/CDC13;
                     smart00976"
                     /db_xref="CDD:214949"
     Site            order(168,222,224,226,248)
                     /site_type="active"
                     /note="generic binding surface II [active]"
                     /db_xref="CDD:239943"
     Site            order(175..178,180,192,214,216,218..219,253)
                     /site_type="other"
                     /note="OB1/OB2 interface [polypeptide binding]"
                     /db_xref="CDD:239943"
     Site            order(177,180,182,186,192,204,206,208,231,233,238)
                     /site_type="other"
                     /note="ssDNA binding site [nucleotide binding]"
                     /db_xref="CDD:239943"
     Region          305..420
                     /region_name="hPOT1_OB2"
                     /note="A subfamily of OB folds similar to the second OB
                     fold (OB2) of human protection of telomeres 1 protein
                     (hPOT1). POT1 proteins bind to the single-stranded (ss)
                     3-prime ends of the telomere. hPOT1 binds specifically to
                     ss telomeric DNA repeats ending with...; cd04498"
                     /db_xref="CDD:239944"
     Site            order(305,367..368,387,389,408..409,412..413,415)
                     /site_type="other"
                     /note="ssDNA binding [nucleotide binding]"
                     /db_xref="CDD:239944"
     Site            order(384,386,411,414,418)
                     /site_type="active"
                     /note="binding surface II [active]"
                     /db_xref="CDD:239944"
     Region          479..>668
                     /region_name="Pot1C"
                     /note="Protection Of Telomeres Protein 1 (POT1) C-terminal
                     region; cd20374"
                     /db_xref="CDD:380669"
     CDS             1..673
                     /gene="POT1"
                     /coded_by="XM_054074581.1:313..2334"
                     /db_xref="GeneID:104055284"
ORIGIN      
        1 mpvrllktvs gksetplpsh lqkedlkhlq egfdhtnkyf kgvvvlsypl mklgdgtdff
       61 kvvlqdldnw isrnnsinil lygkmaedca kvtrhgdtfa vagfkvaksp taredgrhgc
      121 hlevseeags tiyiytvsst vsetasvsva pkyvytplnr lkdgtvvnly gvvkffkppy
      181 vskgtdycsv vtlvdpsnvk ltctlfngnl dflpkiykvg divrfhriki reyngqmqgi
      241 tsagfasltf dgtvgapvvp rtsskvytfm deeqkiieel rvwadsnlci fgpaaklagv
      301 qpmiffdltc qlvgkakvdg ssfllkvwdg tkcpyptwkv pveardlege ktllhqlrnl
      361 tvdilvydnh vqlakslkig sflriysiht kqassdkddv sciefhlhgg tcygrgigvl
      421 petnpdvkel kvflgsvdla dsqnmesmss leldstdles hlqrcqelsv tvltdhqdlk
      481 dtelktilns rapqqyrira klrtyepqkl yqciklhcsk cnslwevpgg ddfdlilqgs
      541 avtapnlelh ntswydsvmw ttedqkqrki tihfvkhdem vqqpedtlim ieggtlkeiw
      601 kltkrfkcvi pvrsteddle lldlsapfll qgnikyygcm rcstpkpiec lssiaaeqqp
      661 swepteiarg qlt
//
LOCUS       XP_053930563             176 aa            linear   VRT 09-MAR-2023
DEFINITION  60S ribosomal protein L18a [Cuculus canorus].
ACCESSION   XP_053930563
VERSION     XP_053930563.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074588.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..176
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..176
                     /product="60S ribosomal protein L18a"
                     /calculated_mol_wt=20611
     Region          83..130
                     /region_name="Ribosomal_L18A"
                     /note="Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A;
                     pfam01775"
                     /db_xref="CDD:396369"
     CDS             1..176
                     /gene="RPL18A"
                     /coded_by="XM_054074588.1:114..644"
                     /db_xref="GeneID:104055185"
ORIGIN      
        1 mkasgtlrey kvvgrclptp kcttpplyrm rifapnhvva ksrfwyfvsq lkkmkkssge
       61 ivycgqvyek splrvknfgi wlrydsrsgt hnmyreyrdl ttagavtqcy rdmgarhrar
      121 ahsiqimkve eiaaskcrrp avkqfhdski kfplphrvlr rqhkprfttk rpntff
//
LOCUS       XP_053930571            1201 aa            linear   VRT 09-MAR-2023
DEFINITION  protocadherin-17 isoform X1 [Cuculus canorus].
ACCESSION   XP_053930571
VERSION     XP_053930571.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074596.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1201
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1201
                     /product="protocadherin-17 isoform X1"
                     /calculated_mol_wt=130026
     Region          21..119
                     /region_name="Cadherin_2"
                     /note="Cadherin-like; pfam08266"
                     /db_xref="CDD:462413"
     Region          148..246
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(150..151,209,211,242,244..245)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          254..354
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(261..262,317,319,350,352..353)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          368..466
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(370..371,429,431,462,464..465)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          475..576
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(481..482,539,541,572,574..575)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          591..679
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     CDS             1..1201
                     /gene="PCDH17"
                     /coded_by="XM_054074596.1:1088..4693"
                     /db_xref="GeneID:104063523"
ORIGIN      
        1 mylsiccffl cwapalslkn lnysvpeeqg agtvignigr darlvagttg ggmlpaergs
       61 paggrgpkst frvlensaph lldvdgesgl lytkqridre alcrrstkcq lslevfandq
      121 eicmikveiq dlndnaptfp sdqvdmdise naapgtrfpl tsahdpdagd nglrtylltr
      181 ddyglfsldv ksrgdgtkfp elviqkpldr eeqshhtlvl taldggdppr sgtvqinvrl
      241 idsndnspvf eaasyvvelp enaplgtavi dlnatdadeg tngevlysfs gyapervrdl
      301 fsidpqsgli rvkgnldyee sglieidvqa rdlgpnpipa hckvtvrlid rndnaptigf
      361 vsvrqgalse aappgtvial vrvtdrdsgk ngqlqcrvlg ggggpgavpf tleenydnfy
      421 tvvtdrpldr eaqdeynvti vardggnppl nstksfsvri ldendnpprf sknlyvlqvp
      481 ennipgeylg svlaqdpdlg qngtvsysil pghvgdvsiy tyvsvnptng aiyalrsfny
      541 eqtkhfefrv lakdsgsphr esnatvrvtv ldvndnapli vlpalindta elqvprnagv
      601 gypvgtvral dsdfgesgrl tyeivegnee hlfemdptsg eirtlhpywe elspvaelvv
      661 kvsdhgkpsl savaklivra lagplpeage pqvngeqhrr phwdlslpli vtlstvsiil
      721 laamitiavk ckrenkeirt yncriaeysh pqlgggggsg gggggsgsgg gkgkkkkisk
      781 ndimlvpseg edsrgplnvm nvvsspslat spmyfdyqtr lplssprsev mylkpasnnl
      841 tvpqghvgch tsftgqgtna seappsrmsi iqtdnfpaep nymgsrqqfv qssstfkdpe
      901 raslrdsghg dsdqadsdqd tnkgsccdms vrealkmktt stksqpieqe qkgrgqrpiv
      961 gicgparced gkfseqeecv nctdecrvlg hsdrcwmpqf paasqaenad yrtnlfvptv
     1021 eanvetetye tvnptgkktf ctfgkdkreh tilianvkpy lkakralspl lqevpsasss
     1081 ptktciepct stkgpldgce vksgalaepn sqylstdsqy lspskqskda pfiasdqmar
     1141 afadvhsrvs rdssemdsvl eqldrsardl gresvdaeev vreidkllqd crgsdpvtvr
     1201 k
//
LOCUS       XP_053930580            1201 aa            linear   VRT 09-MAR-2023
DEFINITION  protocadherin-17 isoform X1 [Cuculus canorus].
ACCESSION   XP_053930580
VERSION     XP_053930580.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074605.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1201
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1201
                     /product="protocadherin-17 isoform X1"
                     /calculated_mol_wt=130026
     Region          21..119
                     /region_name="Cadherin_2"
                     /note="Cadherin-like; pfam08266"
                     /db_xref="CDD:462413"
     Region          148..246
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(150..151,209,211,242,244..245)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          254..354
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(261..262,317,319,350,352..353)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          368..466
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(370..371,429,431,462,464..465)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          475..576
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(481..482,539,541,572,574..575)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          591..679
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     CDS             1..1201
                     /gene="PCDH17"
                     /coded_by="XM_054074605.1:1011..4616"
                     /db_xref="GeneID:104063523"
ORIGIN      
        1 mylsiccffl cwapalslkn lnysvpeeqg agtvignigr darlvagttg ggmlpaergs
       61 paggrgpkst frvlensaph lldvdgesgl lytkqridre alcrrstkcq lslevfandq
      121 eicmikveiq dlndnaptfp sdqvdmdise naapgtrfpl tsahdpdagd nglrtylltr
      181 ddyglfsldv ksrgdgtkfp elviqkpldr eeqshhtlvl taldggdppr sgtvqinvrl
      241 idsndnspvf eaasyvvelp enaplgtavi dlnatdadeg tngevlysfs gyapervrdl
      301 fsidpqsgli rvkgnldyee sglieidvqa rdlgpnpipa hckvtvrlid rndnaptigf
      361 vsvrqgalse aappgtvial vrvtdrdsgk ngqlqcrvlg ggggpgavpf tleenydnfy
      421 tvvtdrpldr eaqdeynvti vardggnppl nstksfsvri ldendnpprf sknlyvlqvp
      481 ennipgeylg svlaqdpdlg qngtvsysil pghvgdvsiy tyvsvnptng aiyalrsfny
      541 eqtkhfefrv lakdsgsphr esnatvrvtv ldvndnapli vlpalindta elqvprnagv
      601 gypvgtvral dsdfgesgrl tyeivegnee hlfemdptsg eirtlhpywe elspvaelvv
      661 kvsdhgkpsl savaklivra lagplpeage pqvngeqhrr phwdlslpli vtlstvsiil
      721 laamitiavk ckrenkeirt yncriaeysh pqlgggggsg gggggsgsgg gkgkkkkisk
      781 ndimlvpseg edsrgplnvm nvvsspslat spmyfdyqtr lplssprsev mylkpasnnl
      841 tvpqghvgch tsftgqgtna seappsrmsi iqtdnfpaep nymgsrqqfv qssstfkdpe
      901 raslrdsghg dsdqadsdqd tnkgsccdms vrealkmktt stksqpieqe qkgrgqrpiv
      961 gicgparced gkfseqeecv nctdecrvlg hsdrcwmpqf paasqaenad yrtnlfvptv
     1021 eanvetetye tvnptgkktf ctfgkdkreh tilianvkpy lkakralspl lqevpsasss
     1081 ptktciepct stkgpldgce vksgalaepn sqylstdsqy lspskqskda pfiasdqmar
     1141 afadvhsrvs rdssemdsvl eqldrsardl gresvdaeev vreidkllqd crgsdpvtvr
     1201 k
//
LOCUS       XP_053930583            1201 aa            linear   VRT 09-MAR-2023
DEFINITION  protocadherin-17 isoform X1 [Cuculus canorus].
ACCESSION   XP_053930583
VERSION     XP_053930583.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074608.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1201
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1201
                     /product="protocadherin-17 isoform X1"
                     /calculated_mol_wt=130026
     Region          21..119
                     /region_name="Cadherin_2"
                     /note="Cadherin-like; pfam08266"
                     /db_xref="CDD:462413"
     Region          148..246
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(150..151,209,211,242,244..245)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          254..354
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(261..262,317,319,350,352..353)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          368..466
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(370..371,429,431,462,464..465)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          475..576
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(481..482,539,541,572,574..575)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          591..679
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     CDS             1..1201
                     /gene="PCDH17"
                     /coded_by="XM_054074608.1:950..4555"
                     /db_xref="GeneID:104063523"
ORIGIN      
        1 mylsiccffl cwapalslkn lnysvpeeqg agtvignigr darlvagttg ggmlpaergs
       61 paggrgpkst frvlensaph lldvdgesgl lytkqridre alcrrstkcq lslevfandq
      121 eicmikveiq dlndnaptfp sdqvdmdise naapgtrfpl tsahdpdagd nglrtylltr
      181 ddyglfsldv ksrgdgtkfp elviqkpldr eeqshhtlvl taldggdppr sgtvqinvrl
      241 idsndnspvf eaasyvvelp enaplgtavi dlnatdadeg tngevlysfs gyapervrdl
      301 fsidpqsgli rvkgnldyee sglieidvqa rdlgpnpipa hckvtvrlid rndnaptigf
      361 vsvrqgalse aappgtvial vrvtdrdsgk ngqlqcrvlg ggggpgavpf tleenydnfy
      421 tvvtdrpldr eaqdeynvti vardggnppl nstksfsvri ldendnpprf sknlyvlqvp
      481 ennipgeylg svlaqdpdlg qngtvsysil pghvgdvsiy tyvsvnptng aiyalrsfny
      541 eqtkhfefrv lakdsgsphr esnatvrvtv ldvndnapli vlpalindta elqvprnagv
      601 gypvgtvral dsdfgesgrl tyeivegnee hlfemdptsg eirtlhpywe elspvaelvv
      661 kvsdhgkpsl savaklivra lagplpeage pqvngeqhrr phwdlslpli vtlstvsiil
      721 laamitiavk ckrenkeirt yncriaeysh pqlgggggsg gggggsgsgg gkgkkkkisk
      781 ndimlvpseg edsrgplnvm nvvsspslat spmyfdyqtr lplssprsev mylkpasnnl
      841 tvpqghvgch tsftgqgtna seappsrmsi iqtdnfpaep nymgsrqqfv qssstfkdpe
      901 raslrdsghg dsdqadsdqd tnkgsccdms vrealkmktt stksqpieqe qkgrgqrpiv
      961 gicgparced gkfseqeecv nctdecrvlg hsdrcwmpqf paasqaenad yrtnlfvptv
     1021 eanvetetye tvnptgkktf ctfgkdkreh tilianvkpy lkakralspl lqevpsasss
     1081 ptktciepct stkgpldgce vksgalaepn sqylstdsqy lspskqskda pfiasdqmar
     1141 afadvhsrvs rdssemdsvl eqldrsardl gresvdaeev vreidkllqd crgsdpvtvr
     1201 k
//
LOCUS       XP_053930591            1200 aa            linear   VRT 09-MAR-2023
DEFINITION  protocadherin-17 isoform X2 [Cuculus canorus].
ACCESSION   XP_053930591
VERSION     XP_053930591.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074616.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1200
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1200
                     /product="protocadherin-17 isoform X2"
                     /calculated_mol_wt=129939
     Region          21..119
                     /region_name="Cadherin_2"
                     /note="Cadherin-like; pfam08266"
                     /db_xref="CDD:462413"
     Region          148..246
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(150..151,209,211,242,244..245)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          254..354
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(261..262,317,319,350,352..353)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          368..466
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(370..371,429,431,462,464..465)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          475..576
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(481..482,539,541,572,574..575)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          591..679
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     CDS             1..1200
                     /gene="PCDH17"
                     /coded_by="XM_054074616.1:1088..4690"
                     /db_xref="GeneID:104063523"
ORIGIN      
        1 mylsiccffl cwapalslkn lnysvpeeqg agtvignigr darlvagttg ggmlpaergs
       61 paggrgpkst frvlensaph lldvdgesgl lytkqridre alcrrstkcq lslevfandq
      121 eicmikveiq dlndnaptfp sdqvdmdise naapgtrfpl tsahdpdagd nglrtylltr
      181 ddyglfsldv ksrgdgtkfp elviqkpldr eeqshhtlvl taldggdppr sgtvqinvrl
      241 idsndnspvf eaasyvvelp enaplgtavi dlnatdadeg tngevlysfs gyapervrdl
      301 fsidpqsgli rvkgnldyee sglieidvqa rdlgpnpipa hckvtvrlid rndnaptigf
      361 vsvrqgalse aappgtvial vrvtdrdsgk ngqlqcrvlg ggggpgavpf tleenydnfy
      421 tvvtdrpldr eaqdeynvti vardggnppl nstksfsvri ldendnpprf sknlyvlqvp
      481 ennipgeylg svlaqdpdlg qngtvsysil pghvgdvsiy tyvsvnptng aiyalrsfny
      541 eqtkhfefrv lakdsgsphr esnatvrvtv ldvndnapli vlpalindta elqvprnagv
      601 gypvgtvral dsdfgesgrl tyeivegnee hlfemdptsg eirtlhpywe elspvaelvv
      661 kvsdhgkpsl savaklivra lagplpeage pqvngeqhrr phwdlslpli vtlstvsiil
      721 laamitiavk ckrenkeirt yncriaeysh pqlgggggsg gggggsgsgg gkgkkkkisk
      781 ndimlvpseg edsrgplnvm nvvsspslat spmyfdyqtr lplssprsev mylkpasnnl
      841 tvpqghvgch tsftgqgtna seappsrmsi iqtdnfpaep nymgsrqqfv qsstfkdper
      901 aslrdsghgd sdqadsdqdt nkgsccdmsv realkmktts tksqpieqeq kgrgqrpivg
      961 icgparcedg kfseqeecvn ctdecrvlgh sdrcwmpqfp aasqaenady rtnlfvptve
     1021 anvetetyet vnptgkktfc tfgkdkreht ilianvkpyl kakralspll qevpsasssp
     1081 tktciepcts tkgpldgcev ksgalaepns qylstdsqyl spskqskdap fiasdqmara
     1141 fadvhsrvsr dssemdsvle qldrsardlg resvdaeevv reidkllqdc rgsdpvtvrk
//
LOCUS       XP_053930600            1176 aa            linear   VRT 09-MAR-2023
DEFINITION  protocadherin-17 isoform X3 [Cuculus canorus].
ACCESSION   XP_053930600
VERSION     XP_053930600.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074625.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1176
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1176
                     /product="protocadherin-17 isoform X3"
                     /calculated_mol_wt=127355
     Region          21..119
                     /region_name="Cadherin_2"
                     /note="Cadherin-like; pfam08266"
                     /db_xref="CDD:462413"
     Region          148..246
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(150..151,209,211,242,244..245)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          254..354
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(261..262,317,319,350,352..353)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          368..466
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(370..371,429,431,462,464..465)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          475..576
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(481..482,539,541,572,574..575)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          591..679
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     CDS             1..1176
                     /gene="PCDH17"
                     /coded_by="XM_054074625.1:1088..4618"
                     /db_xref="GeneID:104063523"
ORIGIN      
        1 mylsiccffl cwapalslkn lnysvpeeqg agtvignigr darlvagttg ggmlpaergs
       61 paggrgpkst frvlensaph lldvdgesgl lytkqridre alcrrstkcq lslevfandq
      121 eicmikveiq dlndnaptfp sdqvdmdise naapgtrfpl tsahdpdagd nglrtylltr
      181 ddyglfsldv ksrgdgtkfp elviqkpldr eeqshhtlvl taldggdppr sgtvqinvrl
      241 idsndnspvf eaasyvvelp enaplgtavi dlnatdadeg tngevlysfs gyapervrdl
      301 fsidpqsgli rvkgnldyee sglieidvqa rdlgpnpipa hckvtvrlid rndnaptigf
      361 vsvrqgalse aappgtvial vrvtdrdsgk ngqlqcrvlg ggggpgavpf tleenydnfy
      421 tvvtdrpldr eaqdeynvti vardggnppl nstksfsvri ldendnpprf sknlyvlqvp
      481 ennipgeylg svlaqdpdlg qngtvsysil pghvgdvsiy tyvsvnptng aiyalrsfny
      541 eqtkhfefrv lakdsgsphr esnatvrvtv ldvndnapli vlpalindta elqvprnagv
      601 gypvgtvral dsdfgesgrl tyeivegnee hlfemdptsg eirtlhpywe elspvaelvv
      661 kvsdhgkpsl savaklivra lagplpeage pqvngeqhrr phwdlslpli vtlstvsiil
      721 laamitiavk ckrenkeirt yncriaeysh pqlgggggsg gggggsgsgg gkgkkkkisk
      781 ndimlvpseg edsrgplnvm nvvsspslat spmyfdyqtr lplssprsev mylkpasnnl
      841 tvpqghvgch tsftgqgtna seappsrmsi iqtdnfpaep nymgsrqqfv qssstfkdpe
      901 raslrdsghg dsdqadsdqd tnkgsccdms vrealkmktt stksqpieqe qeecvnctde
      961 crvlghsdrc wmpqfpaasq aenadyrtnl fvptveanve tetyetvnpt gkktfctfgk
     1021 dkrehtilia nvkpylkakr alspllqevp sasssptktc iepctstkgp ldgcevksga
     1081 laepnsqyls tdsqylspsk qskdapfias dqmarafadv hsrvsrdsse mdsvleqldr
     1141 sardlgresv daeevvreid kllqdcrgsd pvtvrk
//
LOCUS       XP_053930608            1037 aa            linear   VRT 09-MAR-2023
DEFINITION  protocadherin-17 isoform X4 [Cuculus canorus].
ACCESSION   XP_053930608
VERSION     XP_053930608.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074633.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1037
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1037
                     /product="protocadherin-17 isoform X4"
                     /calculated_mol_wt=112237
     Region          21..119
                     /region_name="Cadherin_2"
                     /note="Cadherin-like; pfam08266"
                     /db_xref="CDD:462413"
     Region          148..246
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(150..151,209,211,242,244..245)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          254..354
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(261..262,317,319,350,352..353)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          368..466
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(370..371,429,431,462,464..465)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          475..576
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(481..482,539,541,572,574..575)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          591..679
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     CDS             1..1037
                     /gene="PCDH17"
                     /coded_by="XM_054074633.1:1088..4201"
                     /db_xref="GeneID:104063523"
ORIGIN      
        1 mylsiccffl cwapalslkn lnysvpeeqg agtvignigr darlvagttg ggmlpaergs
       61 paggrgpkst frvlensaph lldvdgesgl lytkqridre alcrrstkcq lslevfandq
      121 eicmikveiq dlndnaptfp sdqvdmdise naapgtrfpl tsahdpdagd nglrtylltr
      181 ddyglfsldv ksrgdgtkfp elviqkpldr eeqshhtlvl taldggdppr sgtvqinvrl
      241 idsndnspvf eaasyvvelp enaplgtavi dlnatdadeg tngevlysfs gyapervrdl
      301 fsidpqsgli rvkgnldyee sglieidvqa rdlgpnpipa hckvtvrlid rndnaptigf
      361 vsvrqgalse aappgtvial vrvtdrdsgk ngqlqcrvlg ggggpgavpf tleenydnfy
      421 tvvtdrpldr eaqdeynvti vardggnppl nstksfsvri ldendnpprf sknlyvlqvp
      481 ennipgeylg svlaqdpdlg qngtvsysil pghvgdvsiy tyvsvnptng aiyalrsfny
      541 eqtkhfefrv lakdsgsphr esnatvrvtv ldvndnapli vlpalindta elqvprnagv
      601 gypvgtvral dsdfgesgrl tyeivegnee hlfemdptsg eirtlhpywe elspvaelvv
      661 kvsdhgkpsl savaklivra lagplpeage pqvngeqhrr phwdlslpli vtlstvsiil
      721 laamitiavk ckrenkeirt yncriaeysh pqlgggggsg gggggsgsgg gkgkkkkisk
      781 ndimlvpseg edsrgplnvm nvvsspslat spmyfdyqtr lplssprsev mylkpasnnl
      841 tvpqghvgch tsftgqgtna seappsrmsi iqtdnfpaep nymgsrqqfv qssstfkdpe
      901 raslrdsghg dsdqadsdqd tnkgsccdms vrealkmktt stksqpieqg liclqnrkae
      961 akdpllgsvd qpavrmenfq skknvltaqm naeflviltg vgchnslqpv rlrmqiiaqi
     1021 slypqlklml rlrhmkl
//
LOCUS       XP_009561798             863 aa            linear   VRT 09-MAR-2023
DEFINITION  inner nuclear membrane protein Man1 [Cuculus canorus].
ACCESSION   XP_009561798
VERSION     XP_009561798.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563503.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561798.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..863
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..863
                     /product="inner nuclear membrane protein Man1"
                     /calculated_mol_wt=94014
     Region          3..41
                     /region_name="LEM"
                     /note="LEM (Lap2/Emerin/Man1) domain found in emerin,
                     lamina-associated polypeptide 2 (LAP2), inner nuclear
                     membrane protein Man1 and similar proteins; cl02649"
                     /db_xref="CDD:470643"
     Site            order(22..27,29..30,33..34,36..37)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:240585"
     Region          <487..700
                     /region_name="MSC"
                     /note="Man1-Src1p-C-terminal domain; pfam09402"
                     /db_xref="CDD:430586"
     Region          737..828
                     /region_name="RRM_Man1"
                     /note="RNA recognition motif (RRM) found in inner nuclear
                     membrane protein Man1 (Man1) and similar proteins;
                     cd12286"
                     /db_xref="CDD:409728"
     CDS             1..863
                     /gene="LEMD3"
                     /coded_by="XM_009563503.2:68..2659"
                     /db_xref="GeneID:104061549"
ORIGIN      
        1 maaaaqltde elfselrrfg fspgpvtest rpvylkklkk lreeeragar gaaaanktrn
       61 snnntagaga agaggaehpc lvgsgrsraa spggkvllgf ssdesdaesg prgqaggrre
      121 rgsplsrgpg ggaapgepar rkpgawwarr agkepgdgaq gggeddeeee eeeeesdrrr
      181 wknrtvngnr llaygadkys dsdsearaeq rgpkegavgr rprrslgksp apfitgkcaa
      241 agametgqer agggcgaagv vtndraeaaa agsldrgrnr eeetaaaggg gcenldcspp
      301 spryrvglsk kapsglllpp pltdvdsski adppgtirkt tnnhvlggas gsynaesriy
      361 saanslppgg tasslrlnhs nhtgsnhtyl kntykknlse peeellqqfk reevsttggf
      421 sahylsmfll taaclfflil gftylrmrgs gvaedvgani knpiselqki qegemslmis
      481 slyalhdkla qvagehecgs siqrnltvqe aaaylknldp efesvlntal qwildngeda
      541 gikclsndpn emdvtnvtdv kylestspkm sfrcrfrraf vsvthrlsiv llgvamvwgv
      601 lhymkyrwak eeeetkqmyd mvvkiidllr shseacsenk dlqpympilh vrdalispqd
      661 rrkmrkvwnr aveflaanes rvrtetrrig gaeflvwkwm qpsaacdkil vipskvwqgq
      721 afhldrrnsp pnsltpclki rnmfdpvmei gdhwhlaiqe ailekcsdnd givhiavdkn
      781 sregcvyvkc lspeyagkaf kalhgswfdg klvtvkylrl dryhhrfpqa ltcntplkps
      841 nthmnsmshl rlrtgttnsq gss
//
LOCUS       XP_009555889             582 aa            linear   VRT 09-MAR-2023
DEFINITION  synapsin-3 [Cuculus canorus].
ACCESSION   XP_009555889
VERSION     XP_009555889.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557594.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555889.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..582
                     /product="synapsin-3"
                     /calculated_mol_wt=63796
     Region          1..29
                     /region_name="Synapsin_N"
                     /note="Synapsin N-terminal; pfam10581"
                     /db_xref="CDD:463155"
     Region          94..190
                     /region_name="Synapsin"
                     /note="N-terminal domain; pfam02078"
                     /db_xref="CDD:460438"
     Region          194..396
                     /region_name="CPSase_L_D2"
                     /note="Carbamoyl-phosphate synthase L chain, ATP binding
                     domain; cl17255"
                     /db_xref="CDD:473076"
     CDS             1..582
                     /gene="SYN3"
                     /coded_by="XM_009557594.2:318..2066"
                     /db_xref="GeneID:104056343"
ORIGIN      
        1 mnflrrrlsd ssfvanlpng ymmdlqrpes stsspvspam erkhpqppqp sqssstgtsi
       61 fssissamkq ttqaaaglid hstsptpvva qkpkillvid dahtdwakyf qgkkvngefd
      121 irveqaefse lnlaayvvgg cmvdmqvmrn gtkvvrsfkp dfvlirqhay smalgedfrs
      181 liiglqyggi htvnslysiy nfcskpwvfs qlikifnslg pekfplveqt ffpshkqmit
      241 tpnfpvvvkl ghahagmgkv kvenqhdfrd iasivamakt yattepfids kydiriqkig
      301 snykaymrts isgnwkantg samleqiamt eryrlwadac semfggldic avkavhskdg
      361 kdyiievmds smpligehve edrqliadlv vskmtqlait agstpsplrp wppqvqpasa
      421 ksqtgpqlgq lsqprpppqg gprqpqgpqp pwtnappqqr lspqgqqpqs pqstspqqqr
      481 spgspqqvrs atgsspvqas kagmfppqqp rppaqgrapt qpsptetskq qatpqphlnk
      541 sqsltntfsl sessqrgnan edeakaetir nlrksfaslf sd
//
LOCUS       XP_053930640             526 aa            linear   VRT 09-MAR-2023
DEFINITION  F-box only protein 7 isoform X1 [Cuculus canorus].
ACCESSION   XP_053930640
VERSION     XP_053930640.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074665.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..526
                     /product="F-box only protein 7 isoform X1"
                     /calculated_mol_wt=58433
     Region          192..315
                     /region_name="PI31_Prot_N"
                     /note="PI31 proteasome regulator N-terminal; pfam11566"
                     /db_xref="CDD:463296"
     Region          330..374
                     /region_name="F-box_FBXO7"
                     /note="F-box domain found in F-box only protein 7 (FBXO7)
                     and similar proteins; cd22087"
                     /db_xref="CDD:438859"
     Site            order(333,337,340..341,344..345,349,351..352,356..358,360)
                     /site_type="other"
                     /note="putative Skp1 binding site [polypeptide binding]"
                     /db_xref="CDD:438859"
     CDS             1..526
                     /gene="FBXO7"
                     /coded_by="XM_054074665.1:175..1755"
                     /db_xref="GeneID:104056365"
ORIGIN      
        1 mklrvrvqkr taalelpgae ptlgelraql rrallpawgy ssdtafsitl nrkdaliede
       61 ktlaaygivp gdliclllee adgqpnlppp stpprlengh elptlvpnkm easspkegqn
      121 eqsdsektqv evqksderag sslafpsglv pedvdleegt gsypsepmlc seaadgeiph
      181 slemlylsae ctsatdaliv lvhllmmetg yvpqgteaka vsmpekwrgn gvyklqythp
      241 lceegsaglt cvplgdlvai natlkinkei kgvkriqlmp asfvcfqepe kvagvykdlq
      301 klsrlfkdql vysllaaarq alnlpdvfgl vvlplelklr ifrlldvrsl islsavcrdl
      361 ytasndqllw rfmylrdfrd piarprdtdw kelykkklkq kkealrwrhm mflpptphpi
      421 pfhpnpfypn pfppnpfpsn piyppmiigg eyderptlpy vgdpinslip gqgeapgqfp
      481 pfrphfdpig slpganptlp gragpnerfp prpsrgrpmd irrafi
//
LOCUS       XP_053930650             489 aa            linear   VRT 09-MAR-2023
DEFINITION  F-box only protein 7 isoform X2 [Cuculus canorus].
ACCESSION   XP_053930650
VERSION     XP_053930650.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074675.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..489
                     /product="F-box only protein 7 isoform X2"
                     /calculated_mol_wt=54248
     Region          155..278
                     /region_name="PI31_Prot_N"
                     /note="PI31 proteasome regulator N-terminal; pfam11566"
                     /db_xref="CDD:463296"
     Region          293..337
                     /region_name="F-box_FBXO7"
                     /note="F-box domain found in F-box only protein 7 (FBXO7)
                     and similar proteins; cd22087"
                     /db_xref="CDD:438859"
     Site            order(296,300,303..304,307..308,312,314..315,319..321,323)
                     /site_type="other"
                     /note="putative Skp1 binding site [polypeptide binding]"
                     /db_xref="CDD:438859"
     CDS             1..489
                     /gene="FBXO7"
                     /coded_by="XM_054074675.1:16..1485"
                     /db_xref="GeneID:104056365"
ORIGIN      
        1 mllgsdtafs itlnrkdali edektlaayg ivpgdlicll leeadgqpnl pppstpprle
       61 nghelptlvp nkmeasspke gqneqsdsek tqvevqksde ragsslafps glvpedvdle
      121 egtgsypsep mlcseaadge iphslemlyl saectsatda livlvhllmm etgyvpqgte
      181 akavsmpekw rgngvyklqy thplceegsa gltcvplgdl vainatlkin keikgvkriq
      241 lmpasfvcfq epekvagvyk dlqklsrlfk dqlvysllaa arqalnlpdv fglvvlplel
      301 klrifrlldv rslislsavc rdlytasndq llwrfmylrd frdpiarprd tdwkelykkk
      361 lkqkkealrw rhmmflpptp hpipfhpnpf ypnpfppnpf psnpiyppmi iggeyderpt
      421 lpyvgdpins lipgqgeapg qfppfrphfd pigslpganp tlpgragpne rfpprpsrgr
      481 pmdirrafi
//
LOCUS       XP_053930662             212 aa            linear   VRT 09-MAR-2023
DEFINITION  metalloproteinase inhibitor 3 [Cuculus canorus].
ACCESSION   XP_053930662
VERSION     XP_053930662.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074687.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..212
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..212
                     /product="metalloproteinase inhibitor 3"
                     /calculated_mol_wt=24458
     Region          25..201
                     /region_name="NTR_TIMP"
                     /note="NTR domain, TIMP subfamily; TIMPs, or tissue
                     inibitors of metalloproteases, are essential regulators of
                     extracellular matrix turnover and remodeling. They form
                     complexes with matrix metalloproteases (MMPs) and
                     inactivate them irreversibly by...; cd03585"
                     /db_xref="CDD:239640"
     Site            order(25..29,59..60,86..92,108,115,117..119,150,152..153,
                     169,175)
                     /site_type="active"
                     /note="Metzincin-binding interface [active]"
                     /db_xref="CDD:239640"
     Site            order(155..158,161,165,167,170,183,188,190,192..197,200)
                     /site_type="other"
                     /note="Hemopexin-domain-binding interface [polypeptide
                     binding]"
                     /db_xref="CDD:239640"
     CDS             1..212
                     /gene="TIMP3"
                     /coded_by="XM_054074687.1:249..887"
                     /db_xref="GeneID:104056342"
ORIGIN      
        1 mtawlsflav flcswslrdl vveactcvpi hpqdafcnsd ivirakvvgk klmkdgpfgt
       61 mrytvkqmkm yrgfqimphv qyiyteases lcgvklevnk yqylitgrvy egkvytglcn
      121 wyekwdrltl sqrkglnhry hlgcgckirp cyylpcfats kneciwtdml snfghsgyqa
      181 khyaciqrve gycswyrgwa ppdktiinat dp
//
LOCUS       XP_053930674             816 aa            linear   VRT 09-MAR-2023
DEFINITION  protein kinase C-binding protein NELL2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053930674
VERSION     XP_053930674.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074699.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..816
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..816
                     /product="protein kinase C-binding protein NELL2 isoform
                     X1"
                     /calculated_mol_wt=91107
     Region          29..214
                     /region_name="TSPN"
                     /note="Thrombospondin N-terminal -like domains;
                     smart00210"
                     /db_xref="CDD:214560"
     Region          274..330
                     /region_name="VWC"
                     /note="von Willebrand factor type C domain; cl17735"
                     /db_xref="CDD:450195"
     Region          440..471
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF domain; pfam07645"
                     /db_xref="CDD:429571"
     Region          486..521
                     /region_name="EGF_3"
                     /note="EGF domain; pfam12947"
                     /db_xref="CDD:463759"
     Region          555..589
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain; smart00179"
                     /db_xref="CDD:214542"
     Site            order(555,558,574)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238011"
     Region          602..633
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF domain; pfam07645"
                     /db_xref="CDD:429571"
     Site            order(602,605,621)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238011"
     Region          705..755
                     /region_name="VWC"
                     /note="von Willebrand factor type C domain; cl17735"
                     /db_xref="CDD:450195"
     CDS             1..816
                     /gene="NELL2"
                     /coded_by="XM_054074699.1:192..2642"
                     /db_xref="GeneID:104062421"
ORIGIN      
        1 mesgirfgsl clllclgtva gfgvdpslqi dvlselqlgg saegvrqvpg lhngskaflf
       61 adtsrsvkas petaeiffqk lrnkyeftil vtlkqahlns gvifsihhld hrylelessg
      121 hrneirlhyr sgshrshtev fpyiladdkw hrlslaisas hlilhvdcnk iyervvekpf
      181 mdlplgttfw lgqrnnahgy fkgvmqdvql lvmpqgfisq cpdlnrtcpt cndfhglvqk
      241 imelqdilak tsaklsqaeq rmnkldqcyc ertctmkgmt yrefeswtdg cknctcmngs
      301 vqcealicph secpldfalt yvngkcckec qsvcvfegrt yfegqretvy sssgdcvlfe
      361 ckdhkmqrip kdsckalncp esqqiplshs cckickghdf cteghncmeh svcrnlddra
      421 vcscrdgfra lrednayced idecaegrhy crentmcvnt pgsfmcickt gyiriddysc
      481 tehdecitnq hncdenalcf ntvgghncvc kpgytgngti ckafckdgcr nggaciasnv
      541 cacpqgftgp scetdidecs dgfvqcdsra icinlpgwyh cecrdgyhdn gmfspsgesc
      601 edidecgtgr hscandtvcf nldggydcrc phgknctgdc ihedkikhng qiwvlendrc
      661 svcscqsgyv mcrrmvcdce nptvdlfccp ecdprlssqc lhqsgelsyn sgdswiqncq
      721 qcrclqgevd cwplpcpevd ceftvlpene ccprcvtdpc qadtirndit ktcldetnvv
      781 rftgsswikh gtectlcqck nghvccsvdp qclqel
//
LOCUS       XP_053930685             814 aa            linear   VRT 09-MAR-2023
DEFINITION  protein kinase C-binding protein NELL2 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053930685
VERSION     XP_053930685.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074710.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..814
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..814
                     /product="protein kinase C-binding protein NELL2 isoform
                     X2"
                     /calculated_mol_wt=90937
     Region          27..212
                     /region_name="TSPN"
                     /note="Thrombospondin N-terminal -like domains;
                     smart00210"
                     /db_xref="CDD:214560"
     Region          272..328
                     /region_name="VWC"
                     /note="von Willebrand factor type C domain; cl17735"
                     /db_xref="CDD:450195"
     Region          438..469
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF domain; pfam07645"
                     /db_xref="CDD:429571"
     Region          484..519
                     /region_name="EGF_3"
                     /note="EGF domain; pfam12947"
                     /db_xref="CDD:463759"
     Region          553..587
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain; smart00179"
                     /db_xref="CDD:214542"
     Site            order(553,556,572)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238011"
     Region          600..631
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF domain; pfam07645"
                     /db_xref="CDD:429571"
     Site            order(600,603,619)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238011"
     Region          703..753
                     /region_name="VWC"
                     /note="von Willebrand factor type C domain; cl17735"
                     /db_xref="CDD:450195"
     CDS             1..814
                     /gene="NELL2"
                     /coded_by="XM_054074710.1:192..2636"
                     /db_xref="GeneID:104062421"
ORIGIN      
        1 mesgirfgsl clllclgtgf gvdpslqidv lselqlggsa egvrqvpglh ngskaflfad
       61 tsrsvkaspe taeiffqklr nkyeftilvt lkqahlnsgv ifsihhldhr ylelessghr
      121 neirlhyrsg shrshtevfp yiladdkwhr lslaisashl ilhvdcnkiy ervvekpfmd
      181 lplgttfwlg qrnnahgyfk gvmqdvqllv mpqgfisqcp dlnrtcptcn dfhglvqkim
      241 elqdilakts aklsqaeqrm nkldqcycer tctmkgmtyr efeswtdgck nctcmngsvq
      301 cealicphse cpldfaltyv ngkcckecqs vcvfegrtyf egqretvyss sgdcvlfeck
      361 dhkmqripkd sckalncpes qqiplshscc kickghdfct eghncmehsv crnlddravc
      421 scrdgfralr ednaycedid ecaegrhycr entmcvntpg sfmcicktgy iriddyscte
      481 hdecitnqhn cdenalcfnt vgghncvckp gytgngtick afckdgcrng gaciasnvca
      541 cpqgftgpsc etdidecsdg fvqcdsraic inlpgwyhce crdgyhdngm fspsgesced
      601 idecgtgrhs candtvcfnl dggydcrcph gknctgdcih edkikhngqi wvlendrcsv
      661 cscqsgyvmc rrmvcdcenp tvdlfccpec dprlssqclh qsgelsynsg dswiqncqqc
      721 rclqgevdcw plpcpevdce ftvlpenecc prcvtdpcqa dtirnditkt cldetnvvrf
      781 tgsswikhgt ectlcqckng hvccsvdpqc lqel
//
LOCUS       XP_053930696            1359 aa            linear   VRT 09-MAR-2023
DEFINITION  DENN domain-containing protein 5B isoform X1 [Cuculus canorus].
ACCESSION   XP_053930696
VERSION     XP_053930696.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074721.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1359
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1359
                     /product="DENN domain-containing protein 5B isoform X1"
                     /calculated_mol_wt=154587
     Region          13..137
                     /region_name="uDENN"
                     /note="Domain always found upstream of DENN domain, found
                     in a variety of signalling proteins; smart00800"
                     /db_xref="CDD:214824"
     Region          204..392
                     /region_name="DENN"
                     /note="DENN (AEX-3) domain; pfam02141"
                     /db_xref="CDD:460461"
     Region          518..593
                     /region_name="dDENN"
                     /note="Domain always found downstream of DENN domain,
                     found in a variety of signalling proteins; smart00801"
                     /db_xref="CDD:129037"
     Region          812..1017
                     /region_name="RUN1_DENND5B"
                     /note="RUN1 domain found in DENN domain-containing protein
                     5B (DENND5B) and similar proteins; cd17691"
                     /db_xref="CDD:439053"
     Site            order(829,833,836,840,843,992,996,999..1000,1002,
                     1006..1007)
                     /site_type="other"
                     /note="putative polypeptide substrate binding site
                     [polypeptide binding]"
                     /db_xref="CDD:439053"
     Region          1021..1129
                     /region_name="PLAT_RAB6IP1"
                     /note="PLAT/LH2 domain present in RAB6 interacting protein
                     1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an
                     eight stranded beta-barrel. In RabIP1 this domain may
                     participate in lipid-mediated modulation of Rab6IP1's
                     function via it's generally proposed...; cd01757"
                     /db_xref="CDD:238855"
     Region          1176..1354
                     /region_name="RUN2_DENND5B"
                     /note="RUN2 domain found in DENN domain-containing protein
                     5B (DENND5B) and similar proteins; cd17693"
                     /db_xref="CDD:439055"
     CDS             1..1359
                     /gene="DENND5B"
                     /coded_by="XM_054074721.1:94..4173"
                     /db_xref="GeneID:104056370"
ORIGIN      
        1 msgsgapgpg aapcrfahyf vlcgidaesg lepdelavly kwleadlrgk ssdttdktsg
       61 enfdqsplrr tfkskvlahy pqniewnpfd qdavnmlcmp kglsfrtqsd nrdpqlhsfi
      121 itredgsrty gfvltfyeev tskqictamq tlyqmhnaeq yssvcasssc smdslassid
      181 egdatslakl qrynsydisr dtlyvskcic litplpfmqa ckkfliqlyk avtsqqpppl
      241 plesyihnil yevplpppgr slkfygvyep iicqrpgpne lplsdyplre vfellglenl
      301 vqvftcvlle mqillysqdy qrlmtvaegi ttllfpfqwq hvyvpilpas llhfldapvp
      361 ylmglqskeg tdrsklelpq eanlcfvdid nhfielpeef pqfpnklefi qeisevllqf
      421 gippegnlhc sdsatklknl vlsdlvndkk ngnipsnaln myellkgnet iarlqalakr
      481 tgvtmekmti tapltekeke kdgklpceel elrdyklnvq lrevfanrft qmfadyeafv
      541 iqaapdmesw ltnreqmqnf dkasflsdqp epylpflshf ietqmfatfi dnkiisqwee
      601 kdpflrvfds rvekirlynv rapalrtsny qkcstlkeag rlsiqrlvlv divapephfl
      661 scekqqtdtq sieqrlmkid htaihphlld mkigqgkyeq gffpklqsdv latgptnnnr
      721 wasrstttqr rkdrlrqhse higldndlre pseelllrqn smafwewdqg pppparppkk
      781 sfsecclkym qearslgknl rqpklsdlsp aviaqtnwkf vegllkecrm ktkrmlvekm
      841 gheavelghg eanitgleen tliaslcdll eriwshglqv kqgksalwsh llqyqereek
      901 qehsaespva vgterrksdt gitlptlrvs liqdmrhvqn mseiktdvgr arawirlsle
      961 kkllsqhlkq llsnqalakk lykryaflrc eeereqflyh llslnavdyf cftsvfttim
     1021 ipyrsviipi kklsnaitts npwicvsgel gdtgvmqipk nhlemtfecq nlgklttvqi
     1081 ghdnsgllak wlvdcvmvrn eitghtykfp cgrwlgkgvd dgslerilig elvsstsdee
     1141 lgkqcrtppq qksptiarrl sitsltgknt kpnagqiqeg igeavnnivk hfhkpekerg
     1201 sltvllcgen glvaaleqvf hhgfksarif hknvfiwdfi ekavayfets dqigdneeal
     1261 llqrsscktf chyvnainta prnigkdgkf qilvclgtrd hflsqwipll aecppitrmy
     1321 eenallrdrm tvnslirvlq tlqdfniile gslikgvdv
//
LOCUS       XP_053930706            1337 aa            linear   VRT 09-MAR-2023
DEFINITION  DENN domain-containing protein 5B isoform X2 [Cuculus canorus].
ACCESSION   XP_053930706
VERSION     XP_053930706.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074731.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1337
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1337
                     /product="DENN domain-containing protein 5B isoform X2"
                     /calculated_mol_wt=152091
     Region          13..115
                     /region_name="uDENN"
                     /note="Domain always found upstream of DENN domain, found
                     in a variety of signalling proteins; smart00800"
                     /db_xref="CDD:214824"
     Region          182..370
                     /region_name="DENN"
                     /note="DENN (AEX-3) domain; pfam02141"
                     /db_xref="CDD:460461"
     Region          496..571
                     /region_name="dDENN"
                     /note="Domain always found downstream of DENN domain,
                     found in a variety of signalling proteins; smart00801"
                     /db_xref="CDD:129037"
     Region          790..995
                     /region_name="RUN1_DENND5B"
                     /note="RUN1 domain found in DENN domain-containing protein
                     5B (DENND5B) and similar proteins; cd17691"
                     /db_xref="CDD:439053"
     Site            order(807,811,814,818,821,970,974,977..978,980,984..985)
                     /site_type="other"
                     /note="putative polypeptide substrate binding site
                     [polypeptide binding]"
                     /db_xref="CDD:439053"
     Region          999..1107
                     /region_name="PLAT_RAB6IP1"
                     /note="PLAT/LH2 domain present in RAB6 interacting protein
                     1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an
                     eight stranded beta-barrel. In RabIP1 this domain may
                     participate in lipid-mediated modulation of Rab6IP1's
                     function via it's generally proposed...; cd01757"
                     /db_xref="CDD:238855"
     Region          1154..1332
                     /region_name="RUN2_DENND5B"
                     /note="RUN2 domain found in DENN domain-containing protein
                     5B (DENND5B) and similar proteins; cd17693"
                     /db_xref="CDD:439055"
     CDS             1..1337
                     /gene="DENND5B"
                     /coded_by="XM_054074731.1:93..4106"
                     /db_xref="GeneID:104056370"
ORIGIN      
        1 msgsgapgpg aapcrfahyf vlcgidaesg lepdelagen fdqsplrrtf kskvlahypq
       61 niewnpfdqd avnmlcmpkg lsfrtqsdnr dpqlhsfiit redgsrtygf vltfyeevts
      121 kqictamqtl yqmhnaeqys svcassscsm dslassideg datslaklqr ynsydisrdt
      181 lyvskcicli tplpfmqack kfliqlykav tsqqppplpl esyihnilye vplpppgrsl
      241 kfygvyepii cqrpgpnelp lsdyplrevf ellglenlvq vftcvllemq illysqdyqr
      301 lmtvaegitt llfpfqwqhv yvpilpasll hfldapvpyl mglqskegtd rsklelpqea
      361 nlcfvdidnh fielpeefpq fpnklefiqe isevllqfgi ppegnlhcsd satklknlvl
      421 sdlvndkkng nipsnalnmy ellkgnetia rlqalakrtg vtmekmtita pltekekekd
      481 gklpceelel rdyklnvqlr evfanrftqm fadyeafviq aapdmeswlt nreqmqnfdk
      541 asflsdqpep ylpflshfie tqmfatfidn kiisqweekd pflrvfdsrv ekirlynvra
      601 palrtsnyqk cstlkeagrl siqrlvlvdi vapephflsc ekqqtdtqsi eqrlmkidht
      661 aihphlldmk igqgkyeqgf fpklqsdvla tgptnnnrwa srstttqrrk drlrqhsehi
      721 gldndlreps eelllrqnsm afwewdqgpp pparppkksf secclkymqe arslgknlrq
      781 pklsdlspav iaqtnwkfve gllkecrmkt krmlvekmgh eavelghgea nitgleentl
      841 iaslcdller iwshglqvkq gksalwshll qyqereekqe hsaespvavg terrksdtgi
      901 tlptlrvsli qdmrhvqnms eiktdvgrar awirlslekk llsqhlkqll snqalakkly
      961 kryaflrcee ereqflyhll slnavdyfcf tsvfttimip yrsviipikk lsnaittsnp
     1021 wicvsgelgd tgvmqipknh lemtfecqnl gklttvqigh dnsgllakwl vdcvmvrnei
     1081 tghtykfpcg rwlgkgvddg sleriligel vsstsdeelg kqcrtppqqk sptiarrlsi
     1141 tsltgkntkp nagqiqegig eavnnivkhf hkpekergsl tvllcgengl vaaleqvfhh
     1201 gfksarifhk nvfiwdfiek avayfetsdq igdneealll qrsscktfch yvnaintapr
     1261 nigkdgkfqi lvclgtrdhf lsqwipllae cppitrmyee nallrdrmtv nslirvlqtl
     1321 qdfniilegs likgvdv
//
LOCUS       XP_053930716            1330 aa            linear   VRT 09-MAR-2023
DEFINITION  DENN domain-containing protein 5B isoform X3 [Cuculus canorus].
ACCESSION   XP_053930716
VERSION     XP_053930716.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074741.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1330
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1330
                     /product="DENN domain-containing protein 5B isoform X3"
                     /calculated_mol_wt=151282
     Region          13..137
                     /region_name="uDENN"
                     /note="Domain always found upstream of DENN domain, found
                     in a variety of signalling proteins; smart00800"
                     /db_xref="CDD:214824"
     Region          204..392
                     /region_name="DENN"
                     /note="DENN (AEX-3) domain; pfam02141"
                     /db_xref="CDD:460461"
     Region          518..593
                     /region_name="dDENN"
                     /note="Domain always found downstream of DENN domain,
                     found in a variety of signalling proteins; smart00801"
                     /db_xref="CDD:129037"
     Region          783..988
                     /region_name="RUN1_DENND5B"
                     /note="RUN1 domain found in DENN domain-containing protein
                     5B (DENND5B) and similar proteins; cd17691"
                     /db_xref="CDD:439053"
     Site            order(800,804,807,811,814,963,967,970..971,973,977..978)
                     /site_type="other"
                     /note="putative polypeptide substrate binding site
                     [polypeptide binding]"
                     /db_xref="CDD:439053"
     Region          992..1100
                     /region_name="PLAT_RAB6IP1"
                     /note="PLAT/LH2 domain present in RAB6 interacting protein
                     1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an
                     eight stranded beta-barrel. In RabIP1 this domain may
                     participate in lipid-mediated modulation of Rab6IP1's
                     function via it's generally proposed...; cd01757"
                     /db_xref="CDD:238855"
     Region          1147..1325
                     /region_name="RUN2_DENND5B"
                     /note="RUN2 domain found in DENN domain-containing protein
                     5B (DENND5B) and similar proteins; cd17693"
                     /db_xref="CDD:439055"
     CDS             1..1330
                     /gene="DENND5B"
                     /coded_by="XM_054074741.1:92..4084"
                     /db_xref="GeneID:104056370"
ORIGIN      
        1 msgsgapgpg aapcrfahyf vlcgidaesg lepdelavly kwleadlrgk ssdttdktsg
       61 enfdqsplrr tfkskvlahy pqniewnpfd qdavnmlcmp kglsfrtqsd nrdpqlhsfi
      121 itredgsrty gfvltfyeev tskqictamq tlyqmhnaeq yssvcasssc smdslassid
      181 egdatslakl qrynsydisr dtlyvskcic litplpfmqa ckkfliqlyk avtsqqpppl
      241 plesyihnil yevplpppgr slkfygvyep iicqrpgpne lplsdyplre vfellglenl
      301 vqvftcvlle mqillysqdy qrlmtvaegi ttllfpfqwq hvyvpilpas llhfldapvp
      361 ylmglqskeg tdrsklelpq eanlcfvdid nhfielpeef pqfpnklefi qeisevllqf
      421 gippegnlhc sdsatklknl vlsdlvndkk ngnipsnaln myellkgnet iarlqalakr
      481 tgvtmekmti tapltekeke kdgklpceel elrdyklnvq lrevfanrft qmfadyeafv
      541 iqaapdmesw ltnreqmqnf dkasflsdqp epylpflshf ietqmfatfi dnkiisqwee
      601 kdpflrvfds rvekirlynv rapalrtsny qkcstlkeaa qsieqrlmki dhtaihphll
      661 dmkigqgkye qgffpklqsd vlatgptnnn rwasrstttq rrkdrlrqhs ehigldndlr
      721 epseelllrq nsmafwewdq gpppparppk ksfsecclky mqearslgkn lrqpklsdls
      781 paviaqtnwk fvegllkecr mktkrmlvek mgheavelgh geanitglee ntliaslcdl
      841 leriwshglq vkqgksalws hllqyqeree kqehsaespv avgterrksd tgitlptlrv
      901 sliqdmrhvq nmseiktdvg rarawirlsl ekkllsqhlk qllsnqalak klykryaflr
      961 ceeereqfly hllslnavdy fcftsvftti mipyrsviip ikklsnaitt snpwicvsge
     1021 lgdtgvmqip knhlemtfec qnlgklttvq ighdnsglla kwlvdcvmvr neitghtykf
     1081 pcgrwlgkgv ddgslerili gelvsstsde elgkqcrtpp qqksptiarr lsitsltgkn
     1141 tkpnagqiqe gigeavnniv khfhkpeker gsltvllcge nglvaaleqv fhhgfksari
     1201 fhknvfiwdf iekavayfet sdqigdneea lllqrssckt fchyvnaint aprnigkdgk
     1261 fqilvclgtr dhflsqwipl laecppitrm yeenallrdr mtvnslirvl qtlqdfniil
     1321 egslikgvdv
//
LOCUS       XP_053930725            1293 aa            linear   VRT 09-MAR-2023
DEFINITION  DENN domain-containing protein 5B isoform X4 [Cuculus canorus].
ACCESSION   XP_053930725
VERSION     XP_053930725.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074750.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1293
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1293
                     /product="DENN domain-containing protein 5B isoform X4"
                     /calculated_mol_wt=147027
     Region          13..137
                     /region_name="uDENN"
                     /note="Domain always found upstream of DENN domain, found
                     in a variety of signalling proteins; smart00800"
                     /db_xref="CDD:214824"
     Region          204..392
                     /region_name="DENN"
                     /note="DENN (AEX-3) domain; pfam02141"
                     /db_xref="CDD:460461"
     Region          518..593
                     /region_name="dDENN"
                     /note="Domain always found downstream of DENN domain,
                     found in a variety of signalling proteins; smart00801"
                     /db_xref="CDD:129037"
     Region          746..951
                     /region_name="RUN1_DENND5B"
                     /note="RUN1 domain found in DENN domain-containing protein
                     5B (DENND5B) and similar proteins; cd17691"
                     /db_xref="CDD:439053"
     Site            order(763,767,770,774,777,926,930,933..934,936,940..941)
                     /site_type="other"
                     /note="putative polypeptide substrate binding site
                     [polypeptide binding]"
                     /db_xref="CDD:439053"
     Region          955..1063
                     /region_name="PLAT_RAB6IP1"
                     /note="PLAT/LH2 domain present in RAB6 interacting protein
                     1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an
                     eight stranded beta-barrel. In RabIP1 this domain may
                     participate in lipid-mediated modulation of Rab6IP1's
                     function via it's generally proposed...; cd01757"
                     /db_xref="CDD:238855"
     Region          1110..1288
                     /region_name="RUN2_DENND5B"
                     /note="RUN2 domain found in DENN domain-containing protein
                     5B (DENND5B) and similar proteins; cd17693"
                     /db_xref="CDD:439055"
     CDS             1..1293
                     /gene="DENND5B"
                     /coded_by="XM_054074750.1:91..3972"
                     /db_xref="GeneID:104056370"
ORIGIN      
        1 msgsgapgpg aapcrfahyf vlcgidaesg lepdelavly kwleadlrgk ssdttdktsg
       61 enfdqsplrr tfkskvlahy pqniewnpfd qdavnmlcmp kglsfrtqsd nrdpqlhsfi
      121 itredgsrty gfvltfyeev tskqictamq tlyqmhnaeq yssvcasssc smdslassid
      181 egdatslakl qrynsydisr dtlyvskcic litplpfmqa ckkfliqlyk avtsqqpppl
      241 plesyihnil yevplpppgr slkfygvyep iicqrpgpne lplsdyplre vfellglenl
      301 vqvftcvlle mqillysqdy qrlmtvaegi ttllfpfqwq hvyvpilpas llhfldapvp
      361 ylmglqskeg tdrsklelpq eanlcfvdid nhfielpeef pqfpnklefi qeisevllqf
      421 gippegnlhc sdsatklknl vlsdlvndkk ngnipsnaln myellkgnet iarlqalakr
      481 tgvtmekmti tapltekeke kdgklpceel elrdyklnvq lrevfanrft qmfadyeafv
      541 iqaapdmesw ltnreqmqnf dkasflsdqp epylpflshf ietqmfatfi dnkiisqwee
      601 kdpflrvfds rvekirlynv rapalrtsny qkcstlkeaa qsieqrlmki dhtaihphll
      661 dmkigqgkye qgffpklqsd vlatgptnnn rwasrstttq rrkdrlrqhs ehigldndlr
      721 ekymqearsl gknlrqpkls dlspaviaqt nwkfvegllk ecrmktkrml vekmgheave
      781 lghgeanitg leentliasl cdlleriwsh glqvkqgksa lwshllqyqe reekqehsae
      841 spvavgterr ksdtgitlpt lrvsliqdmr hvqnmseikt dvgrarawir lslekkllsq
      901 hlkqllsnqa lakklykrya flrceeereq flyhllslna vdyfcftsvf ttimipyrsv
      961 iipikklsna ittsnpwicv sgelgdtgvm qipknhlemt fecqnlgklt tvqighdnsg
     1021 llakwlvdcv mvrneitght ykfpcgrwlg kgvddgsler iligelvsst sdeelgkqcr
     1081 tppqqkspti arrlsitslt gkntkpnagq iqegigeavn nivkhfhkpe kergsltvll
     1141 cgenglvaal eqvfhhgfks arifhknvfi wdfiekavay fetsdqigdn eealllqrss
     1201 cktfchyvna intaprnigk dgkfqilvcl gtrdhflsqw ipllaecppi trmyeenall
     1261 rdrmtvnsli rvlqtlqdfn iilegslikg vdv
//
LOCUS       XP_053930733            1271 aa            linear   VRT 09-MAR-2023
DEFINITION  DENN domain-containing protein 5B isoform X5 [Cuculus canorus].
ACCESSION   XP_053930733
VERSION     XP_053930733.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074758.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1271
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1271
                     /product="DENN domain-containing protein 5B isoform X5"
                     /calculated_mol_wt=144532
     Region          13..115
                     /region_name="uDENN"
                     /note="Domain always found upstream of DENN domain, found
                     in a variety of signalling proteins; smart00800"
                     /db_xref="CDD:214824"
     Region          182..370
                     /region_name="DENN"
                     /note="DENN (AEX-3) domain; pfam02141"
                     /db_xref="CDD:460461"
     Region          496..571
                     /region_name="dDENN"
                     /note="Domain always found downstream of DENN domain,
                     found in a variety of signalling proteins; smart00801"
                     /db_xref="CDD:129037"
     Region          724..929
                     /region_name="RUN1_DENND5B"
                     /note="RUN1 domain found in DENN domain-containing protein
                     5B (DENND5B) and similar proteins; cd17691"
                     /db_xref="CDD:439053"
     Site            order(741,745,748,752,755,904,908,911..912,914,918..919)
                     /site_type="other"
                     /note="putative polypeptide substrate binding site
                     [polypeptide binding]"
                     /db_xref="CDD:439053"
     Region          933..1041
                     /region_name="PLAT_RAB6IP1"
                     /note="PLAT/LH2 domain present in RAB6 interacting protein
                     1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an
                     eight stranded beta-barrel. In RabIP1 this domain may
                     participate in lipid-mediated modulation of Rab6IP1's
                     function via it's generally proposed...; cd01757"
                     /db_xref="CDD:238855"
     Region          1088..1266
                     /region_name="RUN2_DENND5B"
                     /note="RUN2 domain found in DENN domain-containing protein
                     5B (DENND5B) and similar proteins; cd17693"
                     /db_xref="CDD:439055"
     CDS             1..1271
                     /gene="DENND5B"
                     /coded_by="XM_054074758.1:90..3905"
                     /db_xref="GeneID:104056370"
ORIGIN      
        1 msgsgapgpg aapcrfahyf vlcgidaesg lepdelagen fdqsplrrtf kskvlahypq
       61 niewnpfdqd avnmlcmpkg lsfrtqsdnr dpqlhsfiit redgsrtygf vltfyeevts
      121 kqictamqtl yqmhnaeqys svcassscsm dslassideg datslaklqr ynsydisrdt
      181 lyvskcicli tplpfmqack kfliqlykav tsqqppplpl esyihnilye vplpppgrsl
      241 kfygvyepii cqrpgpnelp lsdyplrevf ellglenlvq vftcvllemq illysqdyqr
      301 lmtvaegitt llfpfqwqhv yvpilpasll hfldapvpyl mglqskegtd rsklelpqea
      361 nlcfvdidnh fielpeefpq fpnklefiqe isevllqfgi ppegnlhcsd satklknlvl
      421 sdlvndkkng nipsnalnmy ellkgnetia rlqalakrtg vtmekmtita pltekekekd
      481 gklpceelel rdyklnvqlr evfanrftqm fadyeafviq aapdmeswlt nreqmqnfdk
      541 asflsdqpep ylpflshfie tqmfatfidn kiisqweekd pflrvfdsrv ekirlynvra
      601 palrtsnyqk cstlkeaaqs ieqrlmkidh taihphlldm kigqgkyeqg ffpklqsdvl
      661 atgptnnnrw asrstttqrr kdrlrqhseh igldndlrek ymqearslgk nlrqpklsdl
      721 spaviaqtnw kfvegllkec rmktkrmlve kmgheavelg hgeanitgle entliaslcd
      781 lleriwshgl qvkqgksalw shllqyqere ekqehsaesp vavgterrks dtgitlptlr
      841 vsliqdmrhv qnmseiktdv grarawirls lekkllsqhl kqllsnqala kklykryafl
      901 rceeereqfl yhllslnavd yfcftsvftt imipyrsvii pikklsnait tsnpwicvsg
      961 elgdtgvmqi pknhlemtfe cqnlgklttv qighdnsgll akwlvdcvmv rneitghtyk
     1021 fpcgrwlgkg vddgsleril igelvsstsd eelgkqcrtp pqqksptiar rlsitsltgk
     1081 ntkpnagqiq egigeavnni vkhfhkpeke rgsltvllcg englvaaleq vfhhgfksar
     1141 ifhknvfiwd fiekavayfe tsdqigdnee alllqrssck tfchyvnain taprnigkdg
     1201 kfqilvclgt rdhflsqwip llaecppitr myeenallrd rmtvnslirv lqtlqdfnii
     1261 legslikgvd v
//
LOCUS       XP_053930747             523 aa            linear   VRT 09-MAR-2023
DEFINITION  male-specific lethal 3 homolog isoform X1 [Cuculus canorus].
ACCESSION   XP_053930747
VERSION     XP_053930747.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074772.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..523
                     /product="male-specific lethal 3 homolog isoform X1"
                     /calculated_mol_wt=60236
     Region          14..80
                     /region_name="CBD_MSL3_like"
                     /note="chromo barrel domain of human male-specific lethal
                     complex subunit 3, and similar proteins; cd18983"
                     /db_xref="CDD:350846"
     Site            order(20..21,30..33,53,55..58,62,64..67,69..71,74..75)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:350846"
     Site            order(30,55,58,62)
                     /site_type="other"
                     /note="putative methylated histone tail binding site
                     [chemical binding]"
                     /db_xref="CDD:350846"
     Site            order(52,54..59,61..65)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:350846"
     Site            order(52,55,59,61,65)
                     /site_type="other"
                     /note="putative RNA binding site [nucleotide binding]"
                     /db_xref="CDD:350846"
     Region          159..508
                     /region_name="MRG"
                     /note="pfam05712"
                     /db_xref="CDD:461721"
     CDS             1..523
                     /gene="MSL3"
                     /coded_by="XM_054074772.1:54..1625"
                     /db_xref="GeneID:104054888"
ORIGIN      
        1 mtsrgmkfkf hrgervlcfe pdptkakvly dakivdiivg kdekgrkipe ylihfngwnr
       61 swdrwaaedh vlrdtdenrr lqrklarkav armrrkgrkk rrcrlpgvds vlkslpaeen
      121 dessensiss sssddsdegt deeikseesd iedraemkee qdthtkrdme eraisieipe
      181 vlkkkleedc yyinrrkrlv klpcqtniit ilesyvkhfa inaafsaner srhhqmtpha
      241 nmnlhyvppe knvelckemv dglritfdft lplillypye qaqfkkvtss kfflpikens
      301 tntnrnqeel spsppllnpp tpqstdsqpa tgepatpkrr kaepeilqsl rrstrhssnc
      361 drlsessasp qpkrrhletp asmpklflhl ekktpvhsgs sspitltpsk egsavftgfe
      421 grrnnelnev lswklmpdny ppsdqpppps yiygsqhllr lfvklpeilg kmsfsdknlk
      481 alvkhfemfl rflaeyhddf fpesayvaac eayystknpr aiy
//
LOCUS       XP_053930753             501 aa            linear   VRT 09-MAR-2023
DEFINITION  male-specific lethal 3 homolog isoform X2 [Cuculus canorus].
ACCESSION   XP_053930753
VERSION     XP_053930753.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074778.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..501
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..501
                     /product="male-specific lethal 3 homolog isoform X2"
                     /calculated_mol_wt=57592
     Region          14..80
                     /region_name="CBD_MSL3_like"
                     /note="chromo barrel domain of human male-specific lethal
                     complex subunit 3, and similar proteins; cd18983"
                     /db_xref="CDD:350846"
     Site            order(20..21,30..33,53,55..58,62,64..67,69..71,74..75)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:350846"
     Site            order(30,55,58,62)
                     /site_type="other"
                     /note="putative methylated histone tail binding site
                     [chemical binding]"
                     /db_xref="CDD:350846"
     Site            order(52,54..59,61..65)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:350846"
     Site            order(52,55,59,61,65)
                     /site_type="other"
                     /note="putative RNA binding site [nucleotide binding]"
                     /db_xref="CDD:350846"
     Region          159..493
                     /region_name="MRG"
                     /note="pfam05712"
                     /db_xref="CDD:461721"
     CDS             1..501
                     /gene="MSL3"
                     /coded_by="XM_054074778.1:54..1559"
                     /db_xref="GeneID:104054888"
ORIGIN      
        1 mtsrgmkfkf hrgervlcfe pdptkakvly dakivdiivg kdekgrkipe ylihfngwnr
       61 swdrwaaedh vlrdtdenrr lqrklarkav armrrkgrkk rrcrlpgvds vlkslpaeen
      121 dessensiss sssddsdegt deeikseesd iedraemkee qdthtkrdme eraisieipe
      181 vlkkkleedc yyinrrkrlv klpcqtniit ilesyvkhfa inaafsaner srhhqmtpha
      241 nmnlhyvppe knvelckemv dglritfdft lplillypye qaqfkkvtss kfflpikens
      301 tntnrnqeel spsppllnpp tpqstdsqpa tgepatpkrr kaepeilqsl rrstrhssnc
      361 drlsessasp qpkrrhletp asmpklflhl ekktpvhsgs sspitltpsk egsavftgfe
      421 grrnnelnev lswklmpdny ppsdqpppps yiygsqhllr lfvklpeilg kmsfsdknlk
      481 alvkhfemfl ryltsmppet a
//
LOCUS       XP_053930769             491 aa            linear   VRT 09-MAR-2023
DEFINITION  male-specific lethal 3 homolog isoform X3 [Cuculus canorus].
ACCESSION   XP_053930769
VERSION     XP_053930769.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074794.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..491
                     /product="male-specific lethal 3 homolog isoform X3"
                     /calculated_mol_wt=56500
     Region          14..80
                     /region_name="CBD_MSL3_like"
                     /note="chromo barrel domain of human male-specific lethal
                     complex subunit 3, and similar proteins; cd18983"
                     /db_xref="CDD:350846"
     Site            order(20..21,30..33,53,55..58,62,64..67,69..71,74..75)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:350846"
     Site            order(30,55,58,62)
                     /site_type="other"
                     /note="putative methylated histone tail binding site
                     [chemical binding]"
                     /db_xref="CDD:350846"
     Site            order(52,54..59,61..65)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:350846"
     Site            order(52,55,59,61,65)
                     /site_type="other"
                     /note="putative RNA binding site [nucleotide binding]"
                     /db_xref="CDD:350846"
     Region          159..491
                     /region_name="MRG"
                     /note="pfam05712"
                     /db_xref="CDD:461721"
     CDS             1..491
                     /gene="MSL3"
                     /coded_by="XM_054074794.1:54..1529"
                     /db_xref="GeneID:104054888"
ORIGIN      
        1 mtsrgmkfkf hrgervlcfe pdptkakvly dakivdiivg kdekgrkipe ylihfngwnr
       61 swdrwaaedh vlrdtdenrr lqrklarkav armrrkgrkk rrcrlpgvds vlkslpaeen
      121 dessensiss sssddsdegt deeikseesd iedraemkee qdthtkrdme eraisieipe
      181 vlkkkleedc yyinrrkrlv klpcqtniit ilesyvkhfa inaafsaner srhhqmtpha
      241 nmnlhyvppe knvelckemv dglritfdft lplillypye qaqfkkvtss kfflpikens
      301 tntnrnqeel spsppllnpp tpqstdsqpa tgepatpkrr kaepeilqsl rrstrhssnc
      361 drlsessasp qpkrrhletp asmpklflhl ekktpvhsgs sspitltpsk egsavftgfe
      421 grrnnelnev lswklmpdny ppsdqpppps yiygsqhllr lfvklpeilg kmsfsdknlk
      481 alvkhfemfl r
//
LOCUS       XP_053930781             432 aa            linear   VRT 09-MAR-2023
DEFINITION  male-specific lethal 3 homolog isoform X4 [Cuculus canorus].
ACCESSION   XP_053930781
VERSION     XP_053930781.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074806.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..432
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..432
                     /product="male-specific lethal 3 homolog isoform X4"
                     /calculated_mol_wt=49428
     Region          68..417
                     /region_name="MRG"
                     /note="pfam05712"
                     /db_xref="CDD:461721"
     CDS             1..432
                     /gene="MSL3"
                     /coded_by="XM_054074806.1:151..1449"
                     /db_xref="GeneID:104054888"
ORIGIN      
        1 mrrrkgrkkr rcrlpgvdsv lkslpaeend essensisss ssddsdegtd eeikseesdi
       61 edraemkeeq dthtkrdmee raisieipev lkkkleedcy yinrrkrlvk lpcqtniiti
      121 lesyvkhfai naafsaners rhhqmtphan mnlhyvppek nvelckemvd glritfdftl
      181 plillypyeq aqfkkvtssk fflpikenst ntnrnqeels psppllnppt pqstdsqpat
      241 gepatpkrrk aepeilqslr rstrhssncd rlsessaspq pkrrhletpa smpklflhle
      301 kktpvhsgss spitltpske gsavftgfeg rrnnelnevl swklmpdnyp psdqppppsy
      361 iygsqhllrl fvklpeilgk msfsdknlka lvkhfemflr flaeyhddff pesayvaace
      421 ayystknpra iy
//
LOCUS       XP_009561595             347 aa            linear   VRT 09-MAR-2023
DEFINITION  short-wave-sensitive opsin 1 [Cuculus canorus].
ACCESSION   XP_009561595
VERSION     XP_009561595.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563300.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..347
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..347
                     /product="short-wave-sensitive opsin 1"
                     /calculated_mol_wt=38565
     Region          33..312
                     /region_name="7tmA_SWS1_opsin"
                     /note="short wave-sensitive 1 opsins, member of the class
                     A family of seven-transmembrane G protein-coupled
                     receptors; cd15076"
                     /db_xref="CDD:320204"
     Region          34..60
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320204"
     Region          67..94
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320204"
     Region          105..135
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320204"
     Site            order(108,112..113,116..117,181..184,202..203,207,260,264,
                     287,291)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:320204"
     Region          146..168
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320204"
     Region          195..225
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320204"
     Region          240..270
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320204"
     Region          280..305
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320204"
     CDS             1..347
                     /gene="OPN1SW"
                     /coded_by="XM_009563300.2:12..1055"
                     /db_xref="GeneID:104061366"
ORIGIN      
        1 msgdeefylf knassvgpwd gpqyhiapqw afylqtafmg fvflvgtpln aivlvvtvky
       61 kklrqplnyi lvnisfsgfi scifsvftvf vsssqgyfvf gkhmcalegf vgatgglvtg
      121 wslaflafer yivickpfgn frfsskhalm vvaatwvigv gvavppffgw sryvpeglqc
      181 scgpdwytvg tkykseyytw flfifcfivp lsliifsysq llsalravaa qqqesattqk
      241 aerevsrmvv vmvgsfclcy vpyaalamym vnnrdhgidl rlvtipaffs ksacvynpii
      301 ycfmnkqfra cimetvcgkp mtddsdisss aqrtevssvs ssqvsps
//
LOCUS       XP_053930800             503 aa            linear   VRT 09-MAR-2023
DEFINITION  stromelysin-1-like [Cuculus canorus].
ACCESSION   XP_053930800
VERSION     XP_053930800.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074825.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..503
                     /product="stromelysin-1-like"
                     /calculated_mol_wt=57296
     Region          29..87
                     /region_name="PG_binding_1"
                     /note="Putative peptidoglycan binding domain; pfam01471"
                     /db_xref="CDD:460223"
     Region          108..265
                     /region_name="Peptidase_M10"
                     /note="Matrixin; pfam00413"
                     /db_xref="CDD:425668"
     Region          313..503
                     /region_name="HX"
                     /note="Hemopexin-like repeats.; Hemopexin is a
                     heme-binding protein that transports heme to the liver.
                     Hemopexin-like repeats occur in vitronectin and some
                     matrix metalloproteinases family (matrixins). The HX
                     repeats of some matrixins bind tissue inhibitor of...;
                     cd00094"
                     /db_xref="CDD:238046"
     Site            order(323,325,367,369,415,417,464,466)
                     /site_type="metal-binding"
                     /note="Metal binding sites [ion binding]"
                     /db_xref="CDD:238046"
     CDS             1..503
                     /gene="LOC104064703"
                     /coded_by="XM_054074825.1:39..1550"
                     /db_xref="GeneID:104064703"
ORIGIN      
        1 mkkkliaflg lvyvacscaf plvpekeked mqfakkylen fydfkeekss lfksknlnhm
       61 tekiremqsf fglevtgeln rktldmmkqp rcgipdvrsy stfpqsprwk kedvtyriln
      121 ytpdmlqadv eeaiakafql wssvtplrft rlysgqadim isfasgfhgd fysfdgpggt
      181 lahayppgng iggdahfded enwtkfttys gynlflvaah elghslglgh snvfgalmyp
      241 iymaqdtrny rlpqddidgi qalygspres pafptkglpp qeptkmtpae sptempprke
      301 ptemtpsktp rrpkdcdpdl tfdaittlrg etlffkdsyv wrkspyfsdi ehdtissfwp
      361 slaagfdaay evdkkdqvlf fkdnqywavs gysiesgfpk piqnlgfptn irkidaavhd
      421 qktkttyffv gnvywsfnen tqsmergypr kiaadfpgig hpidaalhkn glfyffhgsn
      481 qyevdikskk lirvmksnsw lnc
//
LOCUS       XP_053930813            1448 aa            linear   VRT 09-MAR-2023
DEFINITION  sister chromatid cohesion protein PDS5 homolog B isoform X1
            [Cuculus canorus].
ACCESSION   XP_053930813
VERSION     XP_053930813.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074838.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1448
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1448
                     /product="sister chromatid cohesion protein PDS5 homolog B
                     isoform X1"
                     /calculated_mol_wt=165140
     Region          29..1099
                     /region_name="PDS5"
                     /note="Sister chromatid cohesion protein PDS5 protein;
                     pfam20168"
                     /db_xref="CDD:466319"
     Region          240..261
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Site            order(253..254,257,260..261,290..291,294,297..298,303,
                     331..332,335,338,368..369,372,375..376,406..407)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:293787"
     Region          273..303
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          313..339
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          350..376
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          <1178..1421
                     /region_name="PTZ00108"
                     /note="DNA topoisomerase 2-like protein; Provisional"
                     /db_xref="CDD:240271"
     CDS             1..1448
                     /gene="PDS5B"
                     /coded_by="XM_054074838.1:174..4520"
                     /db_xref="GeneID:104064178"
ORIGIN      
        1 mahsktrand gkityppgvk eisdkiskee mvrrlkmvvk tfmdmdqdse eekelylnla
       61 lhlasdfflk hpdkdvrllv accladifri yapeapytsp dklkdifmfi trqlkgledt
      121 kspqfnryfy lleniawvks ynicfeleds neiftqlyrt lfsvinnghn qkvhmhmvdl
      181 mssiicegdt vsqelldtvl vnlvpahknl nkqaydlaka llkrtaqaie pyitnffnqv
      241 lmlgktsisd lsehvfdlil elynidshll lsvlpqlefk lksndneerl qvvkllakmf
      301 gakdselasq nkplwqcylg rfndihvpir lecvkfashc lmnhpdlakd lteylkvrsh
      361 dpeeairhdv ivsivtaakk dlllvndhll nfvrertldk rwrvrkeamm glaqiykkys
      421 lqseagkeaa kqiswikdkl lhiyyqnsid drllverifa qymvphnlet nermkclyyl
      481 yatldsnavk alnemwkcqn llrhqvkdlv dlikqpktda sskaifskvm vitrnlpdpg
      541 kaqdfmkkft qvleddekir sqlemlvspt csckqaegcv reitkklgnp kqptnpflem
      601 ikflleriap vhidtesisa likqvnksid gtaddedegv ptdqairagl ellkvlsfth
      661 pisfhsaetf esllaclkmd dekvaeaalq ifkntgskie edfphirsal lpvlhhkakk
      721 gpprqakyai hcihaifssk etqfaqifep lhksldpsnf ehlitplvti ghiamlapdq
      781 faaplkslva tfivkdllmn drlpgkkttk lwvpdeevsp etlvkiqaik mmvrwllgmk
      841 nnhsksgtst lrllttilhs dgdlteqgki skpdmsrlrl aagnaivkla qepcyheiit
      901 leqyqlcala indecyqvrq ifaqklhkgl srlrlpleym aicalcakdp vkerraharq
      961 clvkninvrr eylkqhaavs ekllsllpey vvpytihlla hdpdyvkvqd ieqlkdikec
     1021 lwfileilma knennshafi rkmvenikqt kdaqgpddpk mneklytvcd vamniimsks
     1081 ttyslespkd pvlparyftq pdknfsntkn ylppemksff tpgkpkaanv lgavnkplss
     1141 agkqsqskss rmetvsnass ssnpsspgri kgrldstemd hseneeftlt splpgkktdk
     1201 rddsdlvrse mekprgrkka aitdseekln iddlnklgqe qklrgsqrgk krpavvsesd
     1261 etqwqeekrl kedviesede qnsppkkgrr grppktnnga tpkeepvaks tkrskkkqpp
     1321 aaaaeeeeee eerqtenieq kpkgrqnrtq krtqqraeps etstvesaqs tpqkrrgrrs
     1381 ktppsqpkkv ragrskqaas kenesseemd vfqsnspvsd dipqeeamee eevstinvrr
     1441 rtskrerr
//
LOCUS       XP_053930821            1448 aa            linear   VRT 09-MAR-2023
DEFINITION  sister chromatid cohesion protein PDS5 homolog B isoform X1
            [Cuculus canorus].
ACCESSION   XP_053930821
VERSION     XP_053930821.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074846.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1448
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1448
                     /product="sister chromatid cohesion protein PDS5 homolog B
                     isoform X1"
                     /calculated_mol_wt=165140
     Region          29..1099
                     /region_name="PDS5"
                     /note="Sister chromatid cohesion protein PDS5 protein;
                     pfam20168"
                     /db_xref="CDD:466319"
     Region          240..261
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Site            order(253..254,257,260..261,290..291,294,297..298,303,
                     331..332,335,338,368..369,372,375..376,406..407)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:293787"
     Region          273..303
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          313..339
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          350..376
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          <1178..1421
                     /region_name="PTZ00108"
                     /note="DNA topoisomerase 2-like protein; Provisional"
                     /db_xref="CDD:240271"
     CDS             1..1448
                     /gene="PDS5B"
                     /coded_by="XM_054074846.1:174..4520"
                     /db_xref="GeneID:104064178"
ORIGIN      
        1 mahsktrand gkityppgvk eisdkiskee mvrrlkmvvk tfmdmdqdse eekelylnla
       61 lhlasdfflk hpdkdvrllv accladifri yapeapytsp dklkdifmfi trqlkgledt
      121 kspqfnryfy lleniawvks ynicfeleds neiftqlyrt lfsvinnghn qkvhmhmvdl
      181 mssiicegdt vsqelldtvl vnlvpahknl nkqaydlaka llkrtaqaie pyitnffnqv
      241 lmlgktsisd lsehvfdlil elynidshll lsvlpqlefk lksndneerl qvvkllakmf
      301 gakdselasq nkplwqcylg rfndihvpir lecvkfashc lmnhpdlakd lteylkvrsh
      361 dpeeairhdv ivsivtaakk dlllvndhll nfvrertldk rwrvrkeamm glaqiykkys
      421 lqseagkeaa kqiswikdkl lhiyyqnsid drllverifa qymvphnlet nermkclyyl
      481 yatldsnavk alnemwkcqn llrhqvkdlv dlikqpktda sskaifskvm vitrnlpdpg
      541 kaqdfmkkft qvleddekir sqlemlvspt csckqaegcv reitkklgnp kqptnpflem
      601 ikflleriap vhidtesisa likqvnksid gtaddedegv ptdqairagl ellkvlsfth
      661 pisfhsaetf esllaclkmd dekvaeaalq ifkntgskie edfphirsal lpvlhhkakk
      721 gpprqakyai hcihaifssk etqfaqifep lhksldpsnf ehlitplvti ghiamlapdq
      781 faaplkslva tfivkdllmn drlpgkkttk lwvpdeevsp etlvkiqaik mmvrwllgmk
      841 nnhsksgtst lrllttilhs dgdlteqgki skpdmsrlrl aagnaivkla qepcyheiit
      901 leqyqlcala indecyqvrq ifaqklhkgl srlrlpleym aicalcakdp vkerraharq
      961 clvkninvrr eylkqhaavs ekllsllpey vvpytihlla hdpdyvkvqd ieqlkdikec
     1021 lwfileilma knennshafi rkmvenikqt kdaqgpddpk mneklytvcd vamniimsks
     1081 ttyslespkd pvlparyftq pdknfsntkn ylppemksff tpgkpkaanv lgavnkplss
     1141 agkqsqskss rmetvsnass ssnpsspgri kgrldstemd hseneeftlt splpgkktdk
     1201 rddsdlvrse mekprgrkka aitdseekln iddlnklgqe qklrgsqrgk krpavvsesd
     1261 etqwqeekrl kedviesede qnsppkkgrr grppktnnga tpkeepvaks tkrskkkqpp
     1321 aaaaeeeeee eerqtenieq kpkgrqnrtq krtqqraeps etstvesaqs tpqkrrgrrs
     1381 ktppsqpkkv ragrskqaas kenesseemd vfqsnspvsd dipqeeamee eevstinvrr
     1441 rtskrerr
//
LOCUS       XP_053930831            1446 aa            linear   VRT 09-MAR-2023
DEFINITION  sister chromatid cohesion protein PDS5 homolog B isoform X2
            [Cuculus canorus].
ACCESSION   XP_053930831
VERSION     XP_053930831.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074856.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1446
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1446
                     /product="sister chromatid cohesion protein PDS5 homolog B
                     isoform X2"
                     /calculated_mol_wt=164885
     Region          29..1099
                     /region_name="PDS5"
                     /note="Sister chromatid cohesion protein PDS5 protein;
                     pfam20168"
                     /db_xref="CDD:466319"
     Region          240..261
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Site            order(253..254,257,260..261,290..291,294,297..298,303,
                     331..332,335,338,368..369,372,375..376,406..407)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:293787"
     Region          273..303
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          313..339
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          350..376
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          <1178..1419
                     /region_name="PTZ00108"
                     /note="DNA topoisomerase 2-like protein; Provisional"
                     /db_xref="CDD:240271"
     CDS             1..1446
                     /gene="PDS5B"
                     /coded_by="XM_054074856.1:174..4514"
                     /db_xref="GeneID:104064178"
ORIGIN      
        1 mahsktrand gkityppgvk eisdkiskee mvrrlkmvvk tfmdmdqdse eekelylnla
       61 lhlasdfflk hpdkdvrllv accladifri yapeapytsp dklkdifmfi trqlkgledt
      121 kspqfnryfy lleniawvks ynicfeleds neiftqlyrt lfsvinnghn qkvhmhmvdl
      181 mssiicegdt vsqelldtvl vnlvpahknl nkqaydlaka llkrtaqaie pyitnffnqv
      241 lmlgktsisd lsehvfdlil elynidshll lsvlpqlefk lksndneerl qvvkllakmf
      301 gakdselasq nkplwqcylg rfndihvpir lecvkfashc lmnhpdlakd lteylkvrsh
      361 dpeeairhdv ivsivtaakk dlllvndhll nfvrertldk rwrvrkeamm glaqiykkys
      421 lqseagkeaa kqiswikdkl lhiyyqnsid drllverifa qymvphnlet nermkclyyl
      481 yatldsnavk alnemwkcqn llrhqvkdlv dlikqpktda sskaifskvm vitrnlpdpg
      541 kaqdfmkkft qvleddekir sqlemlvspt csckqaegcv reitkklgnp kqptnpflem
      601 ikflleriap vhidtesisa likqvnksid gtaddedegv ptdqairagl ellkvlsfth
      661 pisfhsaetf esllaclkmd dekvaeaalq ifkntgskie edfphirsal lpvlhhkakk
      721 gpprqakyai hcihaifssk etqfaqifep lhksldpsnf ehlitplvti ghiamlapdq
      781 faaplkslva tfivkdllmn drlpgkkttk lwvpdeevsp etlvkiqaik mmvrwllgmk
      841 nnhsksgtst lrllttilhs dgdlteqgki skpdmsrlrl aagnaivkla qepcyheiit
      901 leqyqlcala indecyqvrq ifaqklhkgl srlrlpleym aicalcakdp vkerraharq
      961 clvkninvrr eylkqhaavs ekllsllpey vvpytihlla hdpdyvkvqd ieqlkdikec
     1021 lwfileilma knennshafi rkmvenikqt kdaqgpddpk mneklytvcd vamniimsks
     1081 ttyslespkd pvlparyftq pdknfsntkn ylppemksff tpgkpkaanv lgavnkplss
     1141 agkqsqskss rmetvsnass ssnpsspgri kgrldstemd hseneeftlt splpgkktdk
     1201 rddsdlseme kprgrkkaai tdseeklnid dlnklgqeqk lrgsqrgkkr pavvsesdet
     1261 qwqeekrlke dviesedeqn sppkkgrrgr ppktnngatp keepvakstk rskkkqppaa
     1321 aaeeeeeeee rqtenieqkp kgrqnrtqkr tqqraepset stvesaqstp qkrrgrrskt
     1381 ppsqpkkvra grskqaaske nesseemdvf qsnspvsddi pqeeameeee vstinvrrrt
     1441 skrerr
//
LOCUS       XP_053930837            1414 aa            linear   VRT 09-MAR-2023
DEFINITION  sister chromatid cohesion protein PDS5 homolog B isoform X3
            [Cuculus canorus].
ACCESSION   XP_053930837
VERSION     XP_053930837.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074862.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1414
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1414
                     /product="sister chromatid cohesion protein PDS5 homolog B
                     isoform X3"
                     /calculated_mol_wt=161352
     Region          29..1099
                     /region_name="PDS5"
                     /note="Sister chromatid cohesion protein PDS5 protein;
                     pfam20168"
                     /db_xref="CDD:466319"
     Region          240..261
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Site            order(253..254,257,260..261,290..291,294,297..298,303,
                     331..332,335,338,368..369,372,375..376,406..407)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:293787"
     Region          273..303
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          313..339
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          350..376
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          <1042..1319
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     CDS             1..1414
                     /gene="PDS5B"
                     /coded_by="XM_054074862.1:174..4418"
                     /db_xref="GeneID:104064178"
ORIGIN      
        1 mahsktrand gkityppgvk eisdkiskee mvrrlkmvvk tfmdmdqdse eekelylnla
       61 lhlasdfflk hpdkdvrllv accladifri yapeapytsp dklkdifmfi trqlkgledt
      121 kspqfnryfy lleniawvks ynicfeleds neiftqlyrt lfsvinnghn qkvhmhmvdl
      181 mssiicegdt vsqelldtvl vnlvpahknl nkqaydlaka llkrtaqaie pyitnffnqv
      241 lmlgktsisd lsehvfdlil elynidshll lsvlpqlefk lksndneerl qvvkllakmf
      301 gakdselasq nkplwqcylg rfndihvpir lecvkfashc lmnhpdlakd lteylkvrsh
      361 dpeeairhdv ivsivtaakk dlllvndhll nfvrertldk rwrvrkeamm glaqiykkys
      421 lqseagkeaa kqiswikdkl lhiyyqnsid drllverifa qymvphnlet nermkclyyl
      481 yatldsnavk alnemwkcqn llrhqvkdlv dlikqpktda sskaifskvm vitrnlpdpg
      541 kaqdfmkkft qvleddekir sqlemlvspt csckqaegcv reitkklgnp kqptnpflem
      601 ikflleriap vhidtesisa likqvnksid gtaddedegv ptdqairagl ellkvlsfth
      661 pisfhsaetf esllaclkmd dekvaeaalq ifkntgskie edfphirsal lpvlhhkakk
      721 gpprqakyai hcihaifssk etqfaqifep lhksldpsnf ehlitplvti ghiamlapdq
      781 faaplkslva tfivkdllmn drlpgkkttk lwvpdeevsp etlvkiqaik mmvrwllgmk
      841 nnhsksgtst lrllttilhs dgdlteqgki skpdmsrlrl aagnaivkla qepcyheiit
      901 leqyqlcala indecyqvrq ifaqklhkgl srlrlpleym aicalcakdp vkerraharq
      961 clvkninvrr eylkqhaavs ekllsllpey vvpytihlla hdpdyvkvqd ieqlkdikec
     1021 lwfileilma knennshafi rkmvenikqt kdaqgpddpk mneklytvcd vamniimsks
     1081 ttyslespkd pvlparyftq pdknfsntkn ylppemksff tpgkpkaanv lgavnkplss
     1141 agkqsqskss rmetvsnass ssnpsspgri kgrldstemd hseneeftlt splpgkktdk
     1201 rddsdlvrse mekprgrkka aitdseekln iddlnklgqe qklrgsqrgk krpavvsesd
     1261 etqwqeekrl kedviesede qnsppkkgrr grppktnnga tpkeepvaks tkrskkkqpp
     1321 aaaaeeeeee eerqtenieq kpkgrqnrtq krtqqsragr skqaaskene sseemdvfqs
     1381 nspvsddipq eeameeeevs tinvrrrtsk rerr
//
LOCUS       XP_053930846            1152 aa            linear   VRT 09-MAR-2023
DEFINITION  TBC1 domain family member 8 isoform X1 [Cuculus canorus].
ACCESSION   XP_053930846
VERSION     XP_053930846.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074871.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1152
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1152
                     /product="TBC1 domain family member 8 isoform X1"
                     /calculated_mol_wt=131662
     Region          171..269
                     /region_name="PH-GRAM1_TBC1D8"
                     /note="TBC1 domain family member 8 (TBC1D8; also called
                     Vascular Rab-GAP/TBC-containing protein) Pleckstrin
                     Homology-Glucosyltransferases, Rab-like GTPase activators
                     and Myotubularins (PH-GRAM) domain, repeat 1; cd13349"
                     /db_xref="CDD:270156"
     Region          311..406
                     /region_name="PH-GRAM2_TBC1D8"
                     /note="TBC1 domain family member 8 (TBC1D8; also called
                     Vascular Rab-GAP/TBC-containing protein) Pleckstrin
                     Homology-Glucosyltransferases, Rab-like GTPase activators
                     and Myotubularins (PH-GRAM) domain, repeat 2; cd13353"
                     /db_xref="CDD:270160"
     Region          514..713
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     CDS             1..1152
                     /gene="TBC1D8"
                     /coded_by="XM_054074871.1:56..3514"
                     /db_xref="GeneID:104056697"
ORIGIN      
        1 mwlkpeevll knalklwvtq kssgyfilqr rrghgdgggr ftgrlvgald avldsnarva
       61 pfrillqvpg sqvysaiacg ellngsevyw aiaigataee inqhwewleq nllhtlsvfd
      121 skedivsfvk gkvkaliaee tssklaeqee dpekfrealv kfesrfnfpe aeklityysc
      181 ccwkgkvprq gwlylsinhl cfysfflgke lkliipwvev qklertsnvf mtdtvrvttp
      241 nkerdfstfl niaeafrime qladvtlrrl ldnevfeldp glqdptqitk rdlearaqne
      301 ffraffrlpr keklhevvdc slwtpfsrch tagrmytsdr yicfaskeng ccnviiplre
      361 visiekmedt sllpnpiivs irsktafqfi elkdrdtlve nllqrlkdvn ssnpvhcnnl
      421 qnknqntsvf gstcvfvgge partersecg kessyllnae alrsdfhqsg magldfgksr
      481 eqikeslwdd hfveygrtvc mfrtekirkl vamgipeslr gklwllfsda vtdlashpgy
      541 yvhlveasmg kccmateeie rdlhrslpeh pafqsetgia alrrvltaya hrnpkigycq
      601 smniltsvll lyakeeeafw llvavcerml pdyfnhrvig aqvdqsvfee likeqlpela
      661 ehmkdltala sislswfltl flsimplesa vnvvdcffyd gikaifqlgl aileanavdl
      721 cnskddgqal milsrflehv kneesplppi gnhhaffsdd qeaspvteia nlihdsyekf
      781 gdhsvaqieh mryrhrirvl qshedttkqn vlrvvipdvs ilpedleely dlfkrehlir
      841 cywevtspvi erhdpsrpya eqyridvhqf anlyrlvspw tcgehtdvla qrtfrllden
      901 mdqliefkgl ascldvmyng emnekiklly klhippalae derdsqsplk npllstsrpl
      961 vigksngdav dyqkqlkqml kdlakekdtk tekelpkmsq refiqfcktl ysmfhedpee
     1021 ndlyqaiatv ttlllqigev gqrsislgsg sdeftedlqp easaseqdtv ftdtvktphk
     1081 dcqtspvteg dwtvsfehil asllteqslv nffekplelk pklenaklnq yslrtngmsc
     1141 psrgehtkln tq
//
LOCUS       XP_053930852            1137 aa            linear   VRT 09-MAR-2023
DEFINITION  TBC1 domain family member 8 isoform X2 [Cuculus canorus].
ACCESSION   XP_053930852
VERSION     XP_053930852.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074877.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1137
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1137
                     /product="TBC1 domain family member 8 isoform X2"
                     /calculated_mol_wt=130045
     Region          156..254
                     /region_name="PH-GRAM1_TBC1D8"
                     /note="TBC1 domain family member 8 (TBC1D8; also called
                     Vascular Rab-GAP/TBC-containing protein) Pleckstrin
                     Homology-Glucosyltransferases, Rab-like GTPase activators
                     and Myotubularins (PH-GRAM) domain, repeat 1; cd13349"
                     /db_xref="CDD:270156"
     Region          296..391
                     /region_name="PH-GRAM2_TBC1D8"
                     /note="TBC1 domain family member 8 (TBC1D8; also called
                     Vascular Rab-GAP/TBC-containing protein) Pleckstrin
                     Homology-Glucosyltransferases, Rab-like GTPase activators
                     and Myotubularins (PH-GRAM) domain, repeat 2; cd13353"
                     /db_xref="CDD:270160"
     Region          499..698
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     CDS             1..1137
                     /gene="TBC1D8"
                     /coded_by="XM_054074877.1:55..3468"
                     /db_xref="GeneID:104056697"
ORIGIN      
        1 mwlkpeevll knalklwvtq kssgyfilqr rrghgdgggr ftgrlvgald avldsnarva
       61 pfrillqvpg sqvysaiacg ataeeinqhw ewleqnllht lsvfdskedi vsfvkgkvka
      121 liaeetsskl aeqeedpekf realvkfesr fnfpeaekli tyyscccwkg kvprqgwlyl
      181 sinhlcfysf flgkelklii pwvevqkler tsnvfmtdtv rvttpnkerd fstflniaea
      241 frimeqladv tlrrlldnev feldpglqdp tqitkrdlea raqneffraf frlprkeklh
      301 evvdcslwtp fsrchtagrm ytsdryicfa skengccnvi iplrevisie kmedtsllpn
      361 piivsirskt afqfielkdr dtlvenllqr lkdvnssnpv hcnnlqnknq ntsvfgstcv
      421 fvggeparte rsecgkessy llnaealrsd fhqsgmagld fgksreqike slwddhfvey
      481 grtvcmfrte kirklvamgi peslrgklwl lfsdavtdla shpgyyvhlv easmgkccma
      541 teeierdlhr slpehpafqs etgiaalrrv ltayahrnpk igycqsmnil tsvlllyake
      601 eeafwllvav cermlpdyfn hrvigaqvdq svfeelikeq lpelaehmkd ltalasisls
      661 wfltlflsim plesavnvvd cffydgikai fqlglailea navdlcnskd dgqalmilsr
      721 flehvknees plppignhha ffsddqeasp vteianlihd syekfgdhsv aqiehmryrh
      781 rirvlqshed ttkqnvlrvv ipdvsilped leelydlfkr ehlircywev tspvierhdp
      841 srpyaeqyri dvhqfanlyr lvspwtcgeh tdvlaqrtfr lldenmdqli efkglascld
      901 vmyngemnek ikllyklhip palaederds qsplknplls tsrplvigks ngdavdyqkq
      961 lkqmlkdlak ekdtktekel pkmsqrefiq fcktlysmfh edpeendlyq aiatvttlll
     1021 qigevgqrsi slgsgsdeft edlqpeasas eqdtvftdtv ktphkdcqts pvtegdwtvs
     1081 fehilasllt eqslvnffek plelkpklen aklnqyslrt ngmscpsrge htklntq
//
LOCUS       XP_009556209             136 aa            linear   VRT 09-MAR-2023
DEFINITION  60S ribosomal protein L31 isoform X1 [Cuculus canorus].
ACCESSION   XP_009556209
VERSION     XP_009556209.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557914.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556209.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..136
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..136
                     /product="60S ribosomal protein L31 isoform X1"
                     /calculated_mol_wt=15577
     Region          30..111
                     /region_name="Ribosomal_L31e"
                     /note="Ribosomal protein L31e; pfam01198"
                     /db_xref="CDD:460108"
     CDS             1..136
                     /gene="RPL31"
                     /coded_by="XM_009557914.2:1..411"
                     /db_xref="GeneID:104056644"
ORIGIN      
        1 mhawmlfsva qmapakkgge kkkgrsaine vvtreytini hkrihgvgfk krapralkei
       61 rkfamkemgt pdvridtrln kavwakgirn vpyrirvrls rkrnededsp nklytlvtyv
      121 pvttfkglqt vnvden
//
LOCUS       XP_053930875             125 aa            linear   VRT 09-MAR-2023
DEFINITION  60S ribosomal protein L31 isoform X2 [Cuculus canorus].
ACCESSION   XP_053930875
VERSION     XP_053930875.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074900.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..125
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..125
                     /product="60S ribosomal protein L31 isoform X2"
                     /calculated_mol_wt=14275
     Region          19..100
                     /region_name="Ribosomal_L31e"
                     /note="Ribosomal protein L31e; pfam01198"
                     /db_xref="CDD:460108"
     CDS             1..125
                     /gene="RPL31"
                     /coded_by="XM_054074900.1:126..503"
                     /db_xref="GeneID:104056644"
ORIGIN      
        1 mapakkggek kkgrsainev vtreytinih krihgvgfkk rapralkeir kfamkemgtp
       61 dvridtrlnk avwakgirnv pyrirvrlsr krnededspn klytlvtyvp vttfkglqtv
      121 nvden
//
LOCUS       XP_053930881             491 aa            linear   VRT 09-MAR-2023
DEFINITION  GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase
            [Cuculus canorus].
ACCESSION   XP_053930881
VERSION     XP_053930881.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074906.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..491
                     /product="GDP-Man:Man(3)GlcNAc(2)-PP-Dol
                     alpha-1,2-mannosyltransferase"
                     /calculated_mol_wt=55147
     Region          62..480
                     /region_name="GT4_ALG11-like"
                     /note="alpha-1,2-mannosyltransferase ALG11 and similar
                     proteins; cd03806"
                     /db_xref="CDD:340835"
     CDS             1..491
                     /gene="ALG11"
                     /coded_by="XM_054074906.1:274..1749"
                     /db_xref="GeneID:104066174"
ORIGIN      
        1 maeiglrlag lsrllcslli pavflsgilc vclvillggi rlwvqqrkkq gtsagrdgkr
       61 plvvaffhpy cnaggggerv lwcairtlqk ryrnvtcvvy tgdrdatgee ivegafrrfn
      121 iklthpvkfv flekrylvea slyphftllg qslgsvflgw eallkfvpdi yidsmgyaft
      181 lplfkylggc rvgcyvhypt istdmlsvvw nqdtrfnnaa fitnnslfsk fklvyyyffa
      241 flyglvgscs dvvmvnsswt lnhilslwra gactsvvypp cdvqtfldlp leedksttey
      301 sivsisqfrp ekdhplqira fakllkekrl gqqlslklil iggcrnpqde ervknlkglc
      361 eelgvsndvt frinisfeel krhlanatig lhtmwnehfg igvvecmaag tvilahnsgg
      421 pkfdivvpye ghttgflads edsyaeamvs ilslppekrl eirenarrsv hrfsdqnfee
      481 tfllsvepll k
//
LOCUS       XP_053930888            1455 aa            linear   VRT 09-MAR-2023
DEFINITION  bridge-like lipid transfer protein family member 3B isoform X1
            [Cuculus canorus].
ACCESSION   XP_053930888
VERSION     XP_053930888.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074913.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1455
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1455
                     /product="bridge-like lipid transfer protein family member
                     3B isoform X1"
                     /calculated_mol_wt=162198
     Region          1..>96
                     /region_name="Chorein_N"
                     /note="N-terminal region of Chorein or VPS13; pfam12624"
                     /db_xref="CDD:463646"
     CDS             1..1455
                     /gene="BLTP3B"
                     /coded_by="XM_054074913.1:170..4537"
                     /db_xref="GeneID:104055194"
ORIGIN      
        1 magiikkqil khlsrftknl spdkinlstl kgegqltnle ldqevlqnml dlptwlaink
       61 vfcnkasiri pwtklkthpi clsldkvvme mstceeprap ngpspiatas gqseygfaek
      121 vvegisvsvn sivirigaka fnasfelsql riysvnanwe hadlrftriq eaqrgevltf
      181 keitwqmiri eadaiqssqh eimsapvrli tnqskirvtl krrlkdcnvv asklvlildd
      241 llwvltdsql kamvqyaksl seaieksteq rkslasetaq ssapvpssqq vkahqtttap
      301 dqndaivklf ndfdvketsh hlvishldlh icddihskek dsnrritgga mqlsfsyltv
      361 dyypfhkagd scdhwmhysd atktrsgwae ellnefkgnv ellkqavkdq viesppkspp
      421 avspqnlqtg keqipkgtsr assvssqqpk gklmsspivv rladfniyqv stadqcrssp
      481 kaliscnkks lylpsempai hiefteyyyp dgkdfpipsp nlygqlnalq ftldersilw
      541 lnqfvldlkq sliqfmamyk lndnsksdeh vdvridglml kfiipsenkp eihkdqpral
      601 siqssemiat ntrcspncrh sdlealfqnf kdceffsrtf tafpksqknf nllhpifqrh
      661 aheqdtkmhd vykgyitpkl nkcalktsaa tdvwalhfsq fwidyegtks gkgrpisfvd
      721 sfplslwicq pvrfaksqke llshnqtaln ipksessdla nrlqrkkllk eyyssemesl
      781 tngiqtsdps gmlsensssd advhvlvhvq khvsvqinhy qylfllllhe slvlllenlr
      841 ndveavtgkp akqtdvcigi llksaelall lhpvtqgnpc kspvaeeesp vasepsplgn
      901 gdaltseskl pgnkivqagi tdfdyvndck plnadinkgi lidpllfksd snmdfqkgms
      961 fsddasdkgl gdiseggssg lfsrsdseev cgplsekssl hprdsssiln rredsaeffi
     1021 dkeddknifs nklseqegtt eeypnqvtdl epetalesqe leinkekvts vrmfasqsss
     1081 sakakercps nlpafsvsyk nmkrspsqvs ldtisidsmm ledhliesdg sdsqsflekg
     1141 itatnyqsps enapeggtvt encdgsspda msaasenahe tseemmsvvv fqifgvngei
     1201 dirgedteic lqvnqviphq lgnisvrhyl cnktvgsdck svagpvnssp eislrwesgp
     1261 savihsllav kngflqchve nfsaefltss ltniqhfled etvaevmpmk ikvsnarinl
     1321 kddsprenlk aselvpiklh idilwierdd dgsflirdnq rvndvskmkn sgsalqqaar
     1381 pvghktqdra tqttceiprp skssrdsddl nknelidene clkqelakak malaevqmek
     1441 dallhrikkm nvdhq
//
LOCUS       XP_053930893            1407 aa            linear   VRT 09-MAR-2023
DEFINITION  bridge-like lipid transfer protein family member 3B isoform X2
            [Cuculus canorus].
ACCESSION   XP_053930893
VERSION     XP_053930893.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074918.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1407
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1407
                     /product="bridge-like lipid transfer protein family member
                     3B isoform X2"
                     /calculated_mol_wt=156797
     Region          <1..>48
                     /region_name="Chorein_N"
                     /note="N-terminal region of Chorein or VPS13; pfam12624"
                     /db_xref="CDD:463646"
     CDS             1..1407
                     /gene="BLTP3B"
                     /coded_by="XM_054074918.1:461..4684"
                     /db_xref="GeneID:104055194"
ORIGIN      
        1 mldlptwlai nkvfcnkasi ripwtklkth piclsldkvv memstceepr apngpspiat
       61 asgqseygfa ekvvegisvs vnsiviriga kafnasfels qlriysvnan wehadlrftr
      121 iqeaqrgevl tfkeitwqmi rieadaiqss qheimsapvr litnqskirv tlkrrlkdcn
      181 vvasklvlil ddllwvltds qlkamvqyak slseaiekst eqrkslaset aqssapvpss
      241 qqvkahqttt apdqndaivk lfndfdvket shhlvishld lhicddihsk ekdsnrritg
      301 gamqlsfsyl tvdyypfhka gdscdhwmhy sdatktrsgw aeellnefkg nvellkqavk
      361 dqviesppks ppavspqnlq tgkeqipkgt srassvssqq pkgklmsspi vvrladfniy
      421 qvstadqcrs spkaliscnk kslylpsemp aihiefteyy ypdgkdfpip spnlygqlna
      481 lqftldersi lwlnqfvldl kqsliqfmam yklndnsksd ehvdvridgl mlkfiipsen
      541 kpeihkdqpr alsiqssemi atntrcspnc rhsdlealfq nfkdceffsr tftafpksqk
      601 nfnllhpifq rhaheqdtkm hdvykgyitp klnkcalkts aatdvwalhf sqfwidyegt
      661 ksgkgrpisf vdsfplslwi cqpvrfaksq kellshnqta lnipksessd lanrlqrkkl
      721 lkeyysseme sltngiqtsd psgmlsenss sdadvhvlvh vqkhvsvqin hyqylfllll
      781 heslvlllen lrndveavtg kpakqtdvci gillksaela lllhpvtqgn pckspvaeee
      841 spvasepspl gngdaltses klpgnkivqa gitdfdyvnd ckplnadink gilidpllfk
      901 sdsnmdfqkg msfsddasdk glgdiseggs sglfsrsdse evcgplseks slhprdsssi
      961 lnrredsaef fidkeddkni fsnklseqeg tteeypnqvt dlepetales qeleinkekv
     1021 tsvrmfasqs sssakakerc psnlpafsvs yknmkrspsq vsldtisids mmledhlies
     1081 dgsdsqsfle kgitatnyqs psenapeggt vtencdgssp damsaasena hetseemmsv
     1141 vvfqifgvng eidirgedte iclqvnqvip hqlgnisvrh ylcnktvgsd cksvagpvns
     1201 speislrwes gpsavihsll avkngflqch venfsaeflt ssltniqhfl edetvaevmp
     1261 mkikvsnari nlkddspren lkaselvpik lhidilwier dddgsflird nqrvndvskm
     1321 knsgsalqqa arpvghktqd ratqttceip rpskssrdsd dlnknelide neclkqelak
     1381 akmalaevqm ekdallhrik kmnvdhq
//
LOCUS       XP_053930909             116 aa            linear   VRT 09-MAR-2023
DEFINITION  NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5
            [Cuculus canorus].
ACCESSION   XP_053930909
VERSION     XP_053930909.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074934.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..116
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..116
                     /product="NADH dehydrogenase [ubiquinone] 1 alpha
                     subcomplex subunit 5"
                     /calculated_mol_wt=13330
     Region          13..79
                     /region_name="ETC_C1_NDUFA5"
                     /note="ETC complex I subunit conserved region; pfam04716"
                     /db_xref="CDD:461407"
     CDS             1..116
                     /gene="NDUFA5"
                     /coded_by="XM_054074934.1:123..473"
                     /db_xref="GeneID:104061617"
ORIGIN      
        1 magalrkttg lvglavaenp herlrilytk ilgvlqnipk daayrkyteq ivnqrfnlvq
       61 tetdvqklqd klnsghieev ivqaenelsl arkmmqwkpw eplveeppsd qwrwpi
//
LOCUS       XP_009563840             494 aa            linear   VRT 09-MAR-2023
DEFINITION  membrane-bound transcription factor site-2 protease isoform X1
            [Cuculus canorus].
ACCESSION   XP_009563840
VERSION     XP_009563840.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565545.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..494
                     /product="membrane-bound transcription factor site-2
                     protease isoform X1"
                     /calculated_mol_wt=54663
     Region          6..>217
                     /region_name="S2P-M50_PDZ_SREBP"
                     /note="Sterol regulatory element-binding protein (SREBP)
                     Site-2 protease (S2P), a zinc metalloprotease (MEROPS
                     family M50A), regulates intramembrane proteolysis (RIP) of
                     SREBP and is part of a signal transduction mechanism
                     involved in sterol and lipid...; cd06162"
                     /db_xref="CDD:100083"
     Region          195..301
                     /region_name="cpPDZ_MBTPS2-like"
                     /note="circularly permuted PDZ domain of membrane-bound
                     transcription factor site-2 protease (MBTPS2, also known
                     as S2P) and related domains; cd06775"
                     /db_xref="CDD:467619"
     Site            order(197..204,234,237,268..269,272)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467619"
     CDS             1..494
                     /gene="MBTPS2"
                     /coded_by="XM_009565545.2:142..1626"
                     /db_xref="GeneID:104063379"
ORIGIN      
        1 mipisvvvcv lggwcaiyla dtllkssnsl kasyedwllt yglsvspfhm rwqtalfnrq
       61 fynwgrwkpr flylwfsigm vfgivamfgs villaktlmq tltqmlteap kaqndrmlqv
      121 vvpgvnlpvs qltyffsail isgvihevgh gvaaireqvr fngfgififi vypgafvdlf
      181 tthlqlispv qqlrifcagv whnfvlgvas lmvlfllpai lfpfyytgvg alvtevaeds
      241 pangprglfv gdlvtnlqdc pvynvedwns clgdiseksq vgyclsaatl qqlsfparvy
      301 rrldgtvecc snnsltdicf sysnnldshl haclparkvv easkvcrtni dcqkdsapsf
      361 cvtpslenqt rlirvkhpph idtlyvghpm hlqytvslss fvprqnflsi dlpvvietfc
      421 kylislsgal avinavpcfa ldgqwilnsf leatlssliv ekqnrelvgf lillagsall
      481 aanvalglwm vtar
//
LOCUS       XP_053930923             478 aa            linear   VRT 09-MAR-2023
DEFINITION  membrane-bound transcription factor site-2 protease isoform X2
            [Cuculus canorus].
ACCESSION   XP_053930923
VERSION     XP_053930923.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074948.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..478
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..478
                     /product="membrane-bound transcription factor site-2
                     protease isoform X2"
                     /calculated_mol_wt=53696
     Region          6..>217
                     /region_name="S2P-M50_PDZ_SREBP"
                     /note="Sterol regulatory element-binding protein (SREBP)
                     Site-2 protease (S2P), a zinc metalloprotease (MEROPS
                     family M50A), regulates intramembrane proteolysis (RIP) of
                     SREBP and is part of a signal transduction mechanism
                     involved in sterol and lipid...; cd06162"
                     /db_xref="CDD:100083"
     Region          195..301
                     /region_name="cpPDZ_MBTPS2-like"
                     /note="circularly permuted PDZ domain of membrane-bound
                     transcription factor site-2 protease (MBTPS2, also known
                     as S2P) and related domains; cd06775"
                     /db_xref="CDD:467619"
     Site            order(197..204,234,237,268..269,272)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467619"
     CDS             1..478
                     /gene="MBTPS2"
                     /coded_by="XM_054074948.1:142..1578"
                     /db_xref="GeneID:104063379"
ORIGIN      
        1 mipisvvvcv lggwcaiyla dtllkssnsl kasyedwllt yglsvspfhm rwqtalfnrq
       61 fynwgrwkpr flylwfsigm vfgivamfgs villaktlmq tltqmlteap kaqndrmlqv
      121 vvpgvnlpvs qltyffsail isgvihevgh gvaaireqvr fngfgififi vypgafvdlf
      181 tthlqlispv qqlrifcagv whnfvlgvas lmvlfllpai lfpfyytgvg alvtevaeds
      241 pangprglfv gdlvtnlqdc pvynvedwns clgdiseksq vgyclsaatl qqlsfparvy
      301 rrldgtvecc snnsltdicf sysnnldshl haclparkvv easkvcrtni dcqkdsapsf
      361 cvtpslenqt rlirvkhpph idtlyvghpm hlqytvslss fvprqnflsi dlpvvietfc
      421 kyplrstips yfrngvrait flqnhrkqgr kmgsikcgfi vscfhlhfee srlfkypn
//
LOCUS       XP_053930932             454 aa            linear   VRT 09-MAR-2023
DEFINITION  membrane-bound transcription factor site-2 protease isoform X3
            [Cuculus canorus].
ACCESSION   XP_053930932
VERSION     XP_053930932.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074957.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..454
                     /product="membrane-bound transcription factor site-2
                     protease isoform X3"
                     /calculated_mol_wt=50552
     Region          6..>217
                     /region_name="S2P-M50_PDZ_SREBP"
                     /note="Sterol regulatory element-binding protein (SREBP)
                     Site-2 protease (S2P), a zinc metalloprotease (MEROPS
                     family M50A), regulates intramembrane proteolysis (RIP) of
                     SREBP and is part of a signal transduction mechanism
                     involved in sterol and lipid...; cd06162"
                     /db_xref="CDD:100083"
     Region          195..301
                     /region_name="cpPDZ_MBTPS2-like"
                     /note="circularly permuted PDZ domain of membrane-bound
                     transcription factor site-2 protease (MBTPS2, also known
                     as S2P) and related domains; cd06775"
                     /db_xref="CDD:467619"
     Site            order(197..204,234,237,268..269,272)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467619"
     CDS             1..454
                     /gene="MBTPS2"
                     /coded_by="XM_054074957.1:142..1506"
                     /db_xref="GeneID:104063379"
ORIGIN      
        1 mipisvvvcv lggwcaiyla dtllkssnsl kasyedwllt yglsvspfhm rwqtalfnrq
       61 fynwgrwkpr flylwfsigm vfgivamfgs villaktlmq tltqmlteap kaqndrmlqv
      121 vvpgvnlpvs qltyffsail isgvihevgh gvaaireqvr fngfgififi vypgafvdlf
      181 tthlqlispv qqlrifcagv whnfvlgvas lmvlfllpai lfpfyytgvg alvtevaeds
      241 pangprglfv gdlvtnlqdc pvynvedwns clgdiseksq vgyclsaatl qqlsfparvy
      301 rrldgtvecc snnsltdicf sysnnldshl haclparkvv easkvcrtni dcqkdsapsf
      361 cvtpslenqt rlirvkhpph idtlyvghpm hlqytvslss fvprqnflsi dlpvvietfc
      421 kyplrvtlgv kliitpgntw sfrgcssdge lchl
//
LOCUS       XP_053930943             454 aa            linear   VRT 09-MAR-2023
DEFINITION  membrane-bound transcription factor site-2 protease isoform X4
            [Cuculus canorus].
ACCESSION   XP_053930943
VERSION     XP_053930943.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074968.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..454
                     /product="membrane-bound transcription factor site-2
                     protease isoform X4"
                     /calculated_mol_wt=50622
     Region          6..>217
                     /region_name="S2P-M50_PDZ_SREBP"
                     /note="Sterol regulatory element-binding protein (SREBP)
                     Site-2 protease (S2P), a zinc metalloprotease (MEROPS
                     family M50A), regulates intramembrane proteolysis (RIP) of
                     SREBP and is part of a signal transduction mechanism
                     involved in sterol and lipid...; cd06162"
                     /db_xref="CDD:100083"
     Region          195..301
                     /region_name="cpPDZ_MBTPS2-like"
                     /note="circularly permuted PDZ domain of membrane-bound
                     transcription factor site-2 protease (MBTPS2, also known
                     as S2P) and related domains; cd06775"
                     /db_xref="CDD:467619"
     Site            order(197..204,234,237,268..269,272)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467619"
     CDS             1..454
                     /gene="MBTPS2"
                     /coded_by="XM_054074968.1:142..1506"
                     /db_xref="GeneID:104063379"
ORIGIN      
        1 mipisvvvcv lggwcaiyla dtllkssnsl kasyedwllt yglsvspfhm rwqtalfnrq
       61 fynwgrwkpr flylwfsigm vfgivamfgs villaktlmq tltqmlteap kaqndrmlqv
      121 vvpgvnlpvs qltyffsail isgvihevgh gvaaireqvr fngfgififi vypgafvdlf
      181 tthlqlispv qqlrifcagv whnfvlgvas lmvlfllpai lfpfyytgvg alvtevaeds
      241 pangprglfv gdlvtnlqdc pvynvedwns clgdiseksq vgyclsaatl qqlsfparvy
      301 rrldgtvecc snnsltdicf sysnnldshl haclparkvv easkvcrtni dcqkdsapsf
      361 cvtpslenqt rlirvkhpph idtlyvghpm hlqytvslss fvprqnflsi dlpvvietfc
      421 kyplslgsvq lwpwklmkkg alkwavsfst apnv
//
LOCUS       XP_009563423             423 aa            linear   VRT 09-MAR-2023
DEFINITION  endothelin receptor type B [Cuculus canorus].
ACCESSION   XP_009563423
VERSION     XP_009563423.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565128.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009563423.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..423
                     /product="endothelin receptor type B"
                     /calculated_mol_wt=47382
     Region          84..379
                     /region_name="7tmA_ET-BR"
                     /note="endothelin B receptor, member of the class A family
                     of seven-transmembrane G protein-coupled receptors;
                     cd15976"
                     /db_xref="CDD:320642"
     Region          85..111
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320642"
     Region          118..144
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320642"
     Site            order(140,143..144,156..161,163..164,167,212,214..218,252,
                     255..257,259..261,263..264,318,321..322,324..325,328,
                     346..347,349..351,354,357..358)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:320642"
     Region          156..186
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320642"
     Region          198..218
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320642"
     Region          252..277
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320642"
     Region          298..328
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320642"
     Region          347..372
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320642"
     CDS             1..423
                     /gene="EDNRB"
                     /coded_by="XM_009565128.2:416..1687"
                     /db_xref="GeneID:104062985"
ORIGIN      
        1 mpaarpwqlp allllllllc graaaegrgs lrppgrqlpp tgtpaaqpna slpaalpegg
       61 ggrprsaspp mctgqteike tfkyintvvs clvfvlgiig nstllriiyk nkcmrngpni
      121 liaslalgdl lhiiidipis vyklfakdwp fgvemcklvp fiqkasvgit vlslcalsid
      181 ryravaswsr ikgigvpkwt aveivliwvi svilavpeai afdmitmeyr gkdlricllh
      241 ptqktsfmmf ykqakdwwlf sfyfclplai talfytlmtc emlrkksgmq ialndhlkqr
      301 revaktvfcl vlvfalcwlp lhlsrilklt iydqkdpnrc ellsfflvmd yiginmasln
      361 scinpialyl vskrfqncfk sclccwcqsk dllsleerqs clkfkandhg ydnfrssnky
      421 sss
//
LOCUS       XP_053930969             586 aa            linear   VRT 09-MAR-2023
DEFINITION  protein DENND6B isoform X1 [Cuculus canorus].
ACCESSION   XP_053930969
VERSION     XP_053930969.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054074994.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..586
                     /product="protein DENND6B isoform X1"
                     /calculated_mol_wt=67332
     Region          152..339
                     /region_name="DENN"
                     /note="DENN (AEX-3) domain; cl11519"
                     /db_xref="CDD:472208"
     Region          251..354
                     /region_name="SPA"
                     /note="Stabilization of polarity axis; cl40631"
                     /db_xref="CDD:454797"
     CDS             1..586
                     /gene="DENND6B"
                     /coded_by="XM_054074994.1:1207..2967"
                     /db_xref="GeneID:104062244"
ORIGIN      
        1 mhrglgvavr ipggcwrnle akplgrqgnl pwwslrvasa splacedptr gtphgkalap
       61 lvypydfrlt ekektsicyl sfpdsysggl gdtqfsfrlr qsrgqrstqy eddgeynrea
      121 pltlqresah yfgyvyfrqv kdssmkrgyf qkslvlvsrl pyvnlfqsll qliapeyfdk
      181 lepcleavcn eidqwpppvp ghtlnlpvmg vviqvripsr vdkpgsspvk qfnqenllpa
      241 plvlpsihel dlfrcfqpvl ihiqmlwelm llgepivvma psptvssemv laltsclapl
      301 ryccdyrpyf tihdsefkey ttrtqappni vvgvtnpffi ktlqhwphil rvgelrmsgd
      361 lpkqvkvkkp aklktldtkp giytsyktfl hkdktlikrl lkgiqrkrps evqsallrrh
      421 lleltqsfii plehyiaslm plqraitpwk nppqirpfrq edfmktleha gpqltcvlkg
      481 dwlglyrrff ksanfdgwyr qrhkemtqkl ealhleaice anivawmkdk seveivdlvl
      541 klreklvrar cqhlpvkeet lqrvglyiet iigslpedlq avlhhh
//
LOCUS       XP_053930977             580 aa            linear   VRT 09-MAR-2023
DEFINITION  protein DENND6B isoform X2 [Cuculus canorus].
ACCESSION   XP_053930977
VERSION     XP_053930977.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075002.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..580
                     /product="protein DENND6B isoform X2"
                     /calculated_mol_wt=66668
     Region          37..>172
                     /region_name="Avl9"
                     /note="Transport protein Avl9; pfam09794"
                     /db_xref="CDD:430832"
     Region          146..333
                     /region_name="DENN"
                     /note="DENN (AEX-3) domain; cl11519"
                     /db_xref="CDD:472208"
     Region          245..348
                     /region_name="SPA"
                     /note="Stabilization of polarity axis; cl40631"
                     /db_xref="CDD:454797"
     CDS             1..580
                     /gene="DENND6B"
                     /coded_by="XM_054075002.1:29..1771"
                     /db_xref="GeneID:104062244"
ORIGIN      
        1 mdalsgaepr srrpavpgpg vatsssplpw arfsawlecv cvvtfdlelg qamelvypyd
       61 frltekekts icylsfpdsy sgglgdtqfs frlrqsrgqr stqyeddgey nreapltlqr
      121 esahyfgyvy frqvkdssmk rgyfqkslvl vsrlpyvnlf qsllqliape yfdklepcle
      181 avcneidqwp ppvpghtlnl pvmgvviqvr ipsrvdkpgs spvkqfnqen llpaplvlps
      241 iheldlfrcf qpvlihiqml welmllgepi vvmapsptvs semvlaltsc laplryccdy
      301 rpyftihdse fkeyttrtqa ppnivvgvtn pffiktlqhw philrvgelr msgdlpkqvk
      361 vkkpaklktl dtkpgiytsy ktflhkdktl ikrllkgiqr krpsevqsal lrrhlleltq
      421 sfiiplehyi aslmplqrai tpwknppqir pfrqedfmkt lehagpqltc vlkgdwlgly
      481 rrffksanfd gwyrqrhkem tqklealhle aiceanivaw mkdkseveiv dlvlklrekl
      541 vrarcqhlpv keetlqrvgl yietiigslp edlqavlhhh
//
LOCUS       XP_053930986             538 aa            linear   VRT 09-MAR-2023
DEFINITION  protein DENND6B isoform X3 [Cuculus canorus].
ACCESSION   XP_053930986
VERSION     XP_053930986.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075011.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..538
                     /product="protein DENND6B isoform X3"
                     /calculated_mol_wt=62199
     Region          104..291
                     /region_name="DENN"
                     /note="DENN (AEX-3) domain; cl11519"
                     /db_xref="CDD:472208"
     Region          203..306
                     /region_name="SPA"
                     /note="Stabilization of polarity axis; cl40631"
                     /db_xref="CDD:454797"
     CDS             1..538
                     /gene="DENND6B"
                     /coded_by="XM_054075011.1:16..1632"
                     /db_xref="GeneID:104062244"
ORIGIN      
        1 mgwpracsgd aqlvypydfr ltekektsic ylsfpdsysg glgdtqfsfr lrqsrgqrst
       61 qyeddgeynr eapltlqres ahyfgyvyfr qvkdssmkrg yfqkslvlvs rlpyvnlfqs
      121 llqliapeyf dklepcleav cneidqwppp vpghtlnlpv mgvviqvrip srvdkpgssp
      181 vkqfnqenll paplvlpsih eldlfrcfqp vlihiqmlwe lmllgepivv mapsptvsse
      241 mvlaltscla plryccdyrp yftihdsefk eyttrtqapp nivvgvtnpf fiktlqhwph
      301 ilrvgelrms gdlpkqvkvk kpaklktldt kpgiytsykt flhkdktlik rllkgiqrkr
      361 psevqsallr rhlleltqsf iiplehyias lmplqraitp wknppqirpf rqedfmktle
      421 hagpqltcvl kgdwlglyrr ffksanfdgw yrqrhkemtq klealhleai ceanivawmk
      481 dkseveivdl vlklreklvr arcqhlpvke etlqrvglyi etiigslped lqavlhhh
//
LOCUS       XP_053930998             363 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 116-like [Cuculus canorus].
ACCESSION   XP_053930998
VERSION     XP_053930998.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075023.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..363
                     /product="transmembrane protein 116-like"
                     /calculated_mol_wt=40253
     Region          <223..328
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          262..294
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          303..328
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..363
                     /gene="LOC128853086"
                     /coded_by="XM_054075023.1:448..1539"
                     /db_xref="GeneID:128853086"
ORIGIN      
        1 madeeehpsa lsdnqvfvlt ciyllaslls llgsgsilav tswqrrcchi qlrplfllal
       61 adflaaavll statiqllpa plfipayaac pygtmlattf ysvsflmviv yayeahrtvr
      121 ggrawhvaal qdrsgclesi wqglpsilaw lvpaltflgq liahgtsitd iapkpiepit
      181 pwkgnrsety slycssclll irraqdicye ytarkdvgle gkiifflyll lvlscctlly
      241 rrvklwcrrn aaaplltlek dgfakksigs vsrvshyfql vfllcwapaf lltvlsftsi
      301 kpaavfvlyv vtaltvslqg flhslvygwl rqnfreeavg krsslwhprg lkafyddslg
      361 avp
//
LOCUS       XP_053931005             354 aa            linear   VRT 09-MAR-2023
DEFINITION  cAMP-dependent protein kinase catalytic subunit PRKX isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931005
VERSION     XP_053931005.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075030.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..354
                     /product="cAMP-dependent protein kinase catalytic subunit
                     PRKX isoform X1"
                     /calculated_mol_wt=40014
     Region          43..334
                     /region_name="STKc_PRKX_like"
                     /note="Catalytic domain of PRKX-like Protein
                     Serine/Threonine Kinases; cd05612"
                     /db_xref="CDD:270763"
     Site            order(51..57,59,72,74,106,122..125,129,168,170,172..173,
                     175,185..186,329)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270763"
     Site            order(52..57,59,72,74,84,106,122..123,125,129,131,135,168,
                     170..173,175,185..186,189,200,202..205,232,236..238,
                     241..243,245,248,329,332)
                     /site_type="active"
                     /db_xref="CDD:270763"
     Site            order(53,55..56,84..86,129,131,135,168,170..172,189,
                     200..205,232,236..238,241..243,245,248..249,332)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270763"
     Site            order(55,85..86,88..89,129,131,135,170..172,189,198..203,
                     206,213..214,232,245..246,249..250,253,332)
                     /site_type="other"
                     /note="regulatory subunit interface [polypeptide binding]"
                     /db_xref="CDD:270763"
     Site            185..205
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270763"
     CDS             1..354
                     /gene="PRKX"
                     /coded_by="XM_054075030.1:247..1311"
                     /db_xref="GeneID:104063749"
ORIGIN      
        1 mdafsaakak igaksggeaa aaglaapppp gpaapeaaac kledletlat vgtgtfgrvh
       61 lvkekmakry falkvmsipd virlkqeqhv hneksvlkev nhpflirlfw tnhderflym
      121 lmeyvpggel fsylrnmgrf nnstglfysa eiicaieylh skeivyrdlk penilldkeg
      181 hikltdfgfa kklvdrtwtl cgtpeylape viqskghgra vdwwalgili femlsgfppf
      241 fddnpfgiyq kilagkidfp rhldlyvkdl ikkllvvdrt rrlgnmknga ddvkrhrwfr
      301 sidwdavpqr klkppiapkv sndgdtsnfe aypeddwnkt ppvppkdlei fknf
//
LOCUS       XP_053931014             289 aa            linear   VRT 09-MAR-2023
DEFINITION  cAMP-dependent protein kinase catalytic subunit PRKX isoform X2
            [Cuculus canorus].
ACCESSION   XP_053931014
VERSION     XP_053931014.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075039.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..289
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..289
                     /product="cAMP-dependent protein kinase catalytic subunit
                     PRKX isoform X2"
                     /calculated_mol_wt=33745
     Region          1..269
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     CDS             1..289
                     /gene="PRKX"
                     /coded_by="XM_054075039.1:129..998"
                     /db_xref="GeneID:104063749"
ORIGIN      
        1 makryfalkv msipdvirlk qeqhvhneks vlkevnhpfl irlfwtnhde rflymlmeyv
       61 pggelfsylr nmgrfnnstg lfysaeiica ieylhskeiv yrdlkpenil ldkeghiklt
      121 dfgfakklvd rtwtlcgtpe ylapeviqsk ghgravdwwa lgilifemls gfppffddnp
      181 fgiyqkilag kidfprhldl yvkdlikkll vvdrtrrlgn mkngaddvkr hrwfrsidwd
      241 avpqrklkpp iapkvsndgd tsnfeayped dwnktppvpp kdleifknf
//
LOCUS       XP_053931028             847 aa            linear   VRT 09-MAR-2023
DEFINITION  M-phase phosphoprotein 8 [Cuculus canorus].
ACCESSION   XP_053931028
VERSION     XP_053931028.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075053.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..847
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..847
                     /product="M-phase phosphoprotein 8"
                     /calculated_mol_wt=94615
     Region          69..114
                     /region_name="CD_CSD"
                     /note="CHROMO (CHRromatin Organization Modifier) domains
                     and chromo shadow domains; cl28914"
                     /db_xref="CDD:475127"
     Site            order(69,84,86..89,93,95..98,100..101,108,111..112)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:349274"
     Region          <189..>503
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          <532..711
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(587,589,593..594,597..599,601..602,606,609,618,620,
                     622,626..627,630..632,634..635,639,642,651,653,655,
                     659..660,663..665,667..668,672,675)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          587..618
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          620..651
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          653..682
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..847
                     /gene="MPHOSPH8"
                     /coded_by="XM_054075053.1:19..2562"
                     /db_xref="GeneID:104055346"
ORIGIN      
        1 maaaaaggsg aeaaaaarle gaegeeetaa aseeegegkg ekggseagka kaaggeseed
       61 eedvfeveki laekseggis lykvrwkgyt sdddtwepea hledckevll efrkknadnk
      121 srpvkkdiqk lslnddvfea esdsdwqset kddispkkkk kkskdgedrs pddpkkkksk
      181 saklkekprt ecenssdalv sdskpkkrss esredstdtk kqrkedtkei kkkkgevkdl
      241 kikskedske nqksrkekhg dvlfdsesst pddvfsqgtd nensdlnses kdkkekivsg
      301 eerleqevae kdsaadrhld esagneddni dikrkkkkvq kaeeykeegr kvetpdtyle
      361 kkslhkrqkg qdkvkmvpge lekvsptqsp vqkglklsad ergrkstdsa geekevkkte
      421 tkeksqkres ekeeksrkeq kglksfkdik spfdlfnval eeksesenny kreessleyk
      481 fiedvkskds kvykerrnir derdtwtcia aedgkqqvls lgmdmqlewl tledfqkhld
      541 gedenhvste pisssllrda vksgdymtvk malssnkeyd ldeedssgmt lvmlaaaggh
      601 ddllrvlirk gakvngrqkn gttalihaae knflttvail leagayvnmq qsngetalmk
      661 ackrgnsdiv rlmiengadc nilskhqnsa lhfakqcnnv lvfeqlkshl etltrvaegt
      721 irdyfearlv llepvfpiac hrlcegpdfs ldfnykppqn vpegsgillf vfhanfcgkd
      781 vvarlcgpcs vqavvlndkf qlpvfldshf iysfsptagl nklfirlaea paakvkllig
      841 ayrvqlq
//
LOCUS       XP_053931041             522 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: paraspeckle component 1 [Cuculus canorus].
ACCESSION   XP_053931041
VERSION     XP_053931041.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075066.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..522
                     /product="LOW QUALITY PROTEIN: paraspeckle component 1"
                     /calculated_mol_wt=58167
     Region          80..149
                     /region_name="RRM_SF"
                     /note="RNA recognition motif (RRM) superfamily; cl17169"
                     /db_xref="CDD:473069"
     Region          155..234
                     /region_name="RRM_SF"
                     /note="RNA recognition motif (RRM) superfamily; cl17169"
                     /db_xref="CDD:473069"
     Region          225..317
                     /region_name="NOPS_p54nrb_PSF_PSPC1"
                     /note="NOPS domain, including C-terminal coiled-coil
                     region, in p54nrb/PSF/PSPC1 family proteins; cd12946"
                     /db_xref="CDD:240581"
     Site            order(225..227,229,269..270,272..274,276..278,280..281,
                     283..284,287..288,291..292,294..295,298..299,302..303,
                     305..306,309..310,313)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:240581"
     Region          <408..>490
                     /region_name="PHA03378"
                     /note="EBNA-3B; Provisional"
                     /db_xref="CDD:223065"
     CDS             1..522
                     /gene="PSPC1"
                     /coded_by="XM_054075066.1:117..1685"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons"
                     /db_xref="GeneID:104055345"
ORIGIN      
        1 maanrnlkqv riensspaap lgmvggggnl kglrgleaes eaaamalgpg keggeeeqev
       61 gftidiksfl kpgeksytqr crlfvgnlpt diteedfkrl ferygepsev finrdrgfgf
      121 irlesrtlae iakatxmyyl ksrplrirfa thgaaltvkn lspvvsnell eqafsqfgpv
      181 eravvvvddr gratgkgfve faakpparka lercxdgafl ltttprpvvv epmeqfdded
      241 glpeklmqkt qqyhkereqp prfaqpgtfe feyasrwkal demekqqreq vdrnireake
      301 kleaemeaar hehqlmlmrq dlmrrqeelr rleelrnqel qkrkqiqlrh eeehrrreee
      361 mlrqreqeel rrqqeggfkp nfmdnreqem rmgdmgprga inmgdafspa pagnqgpppm
      421 mgmnmnnrgt lpgpamgpgp smgpegaanm gtpmmpdngt vhnerfpqgg psqmgsplvs
      481 rtgsetpqpp msgvgavsgg pggfgrgnpg gnfegpnkrr ry
//
LOCUS       XP_053931054             502 aa            linear   VRT 09-MAR-2023
DEFINITION  TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 [Cuculus
            canorus].
ACCESSION   XP_053931054
VERSION     XP_053931054.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075079.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..502
                     /product="TGF-beta-activated kinase 1 and MAP3K7-binding
                     protein 1"
                     /calculated_mol_wt=54647
     Region          69..334
                     /region_name="PP2Cc"
                     /note="Serine/threonine phosphatases, family 2C, catalytic
                     domain; The protein architecture and deduced catalytic
                     mechanism of PP2C phosphatases are similar to the PP1,
                     PP2A, PP2B family of protein Ser/Thr phosphatases, with
                     which PP2C shares no sequence...; cl00120"
                     /db_xref="CDD:469621"
     CDS             1..502
                     /gene="TAB1"
                     /coded_by="XM_054075079.1:72..1580"
                     /db_xref="GeneID:104065926"
ORIGIN      
        1 maaqrrsllq seqqpswtdd lpschlsgvg sapnrsysad gkgteghple dnwlkfrsen
       61 ncylygvfng ydgnrvtnfv gqrlsaelll gqlhadhsda dvrrvllqaf dvversfles
      121 iddalaekas lqsqlpegvp hhqlppqysk iverlkaveq eisggamaiv avvlnnklyi
      181 anvgtnrall ckstvdglqv tqlnvdhtte nedelfrfsq lgldagkikq vgtirgqest
      241 rrigdykvky gytdiellsa akskpiiaep eihgghsldg vtgflvlmse glykaleaah
      301 gpgqanqeia amiatefakq tsldavaqav vdrvkrihcd tfasggersk fcprhedmtl
      361 lvrnfgyplg emsqptltpt qggrvypvsv pysssqstsk tsvtlslvmp sqgqmvngah
      421 ssstldeatp tltnqsptvt lqstntrtqs sssssdgglf rsrpthslqp dedgrvepyv
      481 dfaefyrlwn mdhseqgplt vs
//
LOCUS       XP_053931063             233 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptogyrin-1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931063
VERSION     XP_053931063.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075088.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..233
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..233
                     /product="synaptogyrin-1 isoform X1"
                     /calculated_mol_wt=25733
     Region          20..167
                     /region_name="MARVEL"
                     /note="Membrane-associating domain; pfam01284"
                     /db_xref="CDD:366555"
     CDS             1..233
                     /gene="SYNGR1"
                     /coded_by="XM_054075088.1:99..800"
                     /db_xref="GeneID:128853091"
ORIGIN      
        1 mdggafgagk aggafdlnaf irqpqtllrl vswvfsivvf gsivnegyvn radetqehci
       61 fnrnrnacny gitvgvlafl scllylalda yfpqissvkd rkkavlsdig vsafwaflwf
      121 vgfcfltnqw qaskeednpm negadaaraa itfsffsift wvgqaflayq rfrlgadsal
      181 fsqdymdpsq dsgmpyapyt needasdavg tyqqpppada fdtetqgyqt qny
//
LOCUS       XP_053931074             189 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptogyrin-1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931074
VERSION     XP_053931074.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075099.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..189
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..189
                     /product="synaptogyrin-1 isoform X2"
                     /calculated_mol_wt=21127
     Region          20..167
                     /region_name="MARVEL"
                     /note="Membrane-associating domain; pfam01284"
                     /db_xref="CDD:366555"
     CDS             1..189
                     /gene="SYNGR1"
                     /coded_by="XM_054075099.1:102..671"
                     /db_xref="GeneID:128853091"
ORIGIN      
        1 mdggafgagk aggafdlnaf irqpqtllrl vswvfsivvf gsivnegyvn radetqehci
       61 fnrnrnacny gitvgvlafl scllylalda yfpqissvkd rkkavlsdig vsafwaflwf
      121 vgfcfltnqw qaskeednpm negadaaraa itfsffsift wgfltflafr rlrditfqee
      181 yntlfpnsp
//
LOCUS       XP_053931082             367 aa            linear   VRT 09-MAR-2023
DEFINITION  28S ribosomal protein S9, mitochondrial [Cuculus canorus].
ACCESSION   XP_053931082
VERSION     XP_053931082.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075107.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..367
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..367
                     /product="28S ribosomal protein S9, mitochondrial"
                     /calculated_mol_wt=41842
     Region          245..367
                     /region_name="Ribosomal_S9"
                     /note="Ribosomal protein S9/S16; pfam00380"
                     /db_xref="CDD:459791"
     CDS             1..367
                     /gene="MRPS9"
                     /coded_by="XM_054075107.1:83..1186"
                     /db_xref="GeneID:104056686"
ORIGIN      
        1 maaavgralr lggpraqtlr liytttavqr rnvgasgpek yteafikkqi eefnlgkrhl
       61 anmmgedpet ftqedidkai aylfpsglfd kqarpmmkhp seifpeqrki qwgedgrpfh
      121 flfytgkqsy yslmhetyek llnvqkhqdq ltaqdllpqk ekrnlagsrw ltkieleeml
      181 leklsdndyl rfiqllqklm mmpcgdieek yiqkfskevp aqlqkvviep lkydeqgvaf
      241 stgegtrkta katavvygng tgkitvngid ilhyfsvlqd reqllfpfqf ldrvgkhdtv
      301 ctvsgggrsa qagairlata kalrsfvtek evefmrqagl ltpdprvker kkpgqegarr
      361 kftwkkr
//
LOCUS       XP_053931093             211 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP synthase subunit O, mitochondrial [Cuculus canorus].
ACCESSION   XP_053931093
VERSION     XP_053931093.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075118.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..211
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..211
                     /product="ATP synthase subunit O, mitochondrial"
                     /calculated_mol_wt=22888
     Region          35..207
                     /region_name="OSCP"
                     /note="ATP synthase delta (OSCP) subunit; pfam00213"
                     /db_xref="CDD:459714"
     CDS             1..211
                     /gene="ATP5PO"
                     /coded_by="XM_054075118.1:79..714"
                     /db_xref="GeneID:104064752"
ORIGIN      
        1 matavgfglk vrqlstsaar pvsklvkppi qvyglegrya talysaaskq kkldqvekel
       61 srvwtllkdp klssvvmnph tksavkqkav sdalakekms pitvnlmnll aengrlrytp
      121 divsafgkim sayrgevlct vttaqpldda sltelksals gfltkgevlk letktdpsil
      181 ggmivnigek yvdmstrski qkltkimret v
//
LOCUS       XP_053931101             643 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 138 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053931101
VERSION     XP_053931101.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075126.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..643
                     /product="coiled-coil domain-containing protein 138
                     isoform X1"
                     /calculated_mol_wt=72485
     Region          <164..>290
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..643
                     /gene="CCDC138"
                     /coded_by="XM_054075126.1:58..1989"
                     /db_xref="GeneID:104056677"
ORIGIN      
        1 magagpgrgr agdclseaiq tdyksggslv yrghmdisle nttvslskcs seseftesgr
       61 ensirssggf lqnfqdwdcf ddaqdsfsds sgleieekai nyfetgstlp shlaanaren
      121 gdqsiisgli rkimsgtdaq acsskgfipp hinqiydels vihqklqres saqqeyalql
      181 qkrerflier eallfrheaa lakirsveee vhtkfgilke qheaevkqlt ealreitken
      241 rrlklsfdtl kemndslrkq lndvtelnkk legqarkvqa rlenlqrkhe flivrkskdv
      301 cqvvqqskpv kqekatvtsk iaklplnsqv yelltflmdw isdqhlskik iqeeregsrk
      361 ftvaqttkkp ctqercmkll pmaaeqlqwm pfvnpklhmp vikfiywsir qldtgvqhai
      421 mtstmrrlge difkgivskg nphspseqst qsksksaaff ksscmplrfl stlivlktvt
      481 qvdylakafd slcvdlktde gkalfleyqc vpvilrhlkv ssrgllssal dgllqmtmes
      541 gslqpfleac snesffrtcs allrsskldi qileklcvll qnlsriksnm kmfelfnlhq
      601 tiqelhrtan pdhaflcinl nsillnlgls rsssltssls tsh
//
LOCUS       XP_053931111             624 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 138 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053931111
VERSION     XP_053931111.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075136.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..624
                     /product="coiled-coil domain-containing protein 138
                     isoform X2"
                     /calculated_mol_wt=70494
     Region          <145..>271
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..624
                     /gene="CCDC138"
                     /coded_by="XM_054075136.1:59..1933"
                     /db_xref="GeneID:104056677"
ORIGIN      
        1 magagpgrgr agdclseaiq tdyksggslv yreseftesg rensirssgg flqnfqdwdc
       61 fddaqdsfsd ssgleieeka inyfetgstl pshlaanare ngdqsiisgl irkimsgtda
      121 qacsskgfip phinqiydel svihqklqre ssaqqeyalq lqkrerflie reallfrhea
      181 alakirsvee evhtkfgilk eqheaevkql tealreitke nrrlklsfdt lkemndslrk
      241 qlndvtelnk klegqarkvq arlenlqrkh eflivrkskd vcqvvqqskp vkqekatvts
      301 kiaklplnsq vyelltflmd wisdqhlski kiqeeregsr kftvaqttkk pctqercmkl
      361 lpmaaeqlqw mpfvnpklhm pvikfiywsi rqldtgvqha imtstmrrlg edifkgivsk
      421 gnphspseqs tqsksksaaf fksscmplrf lstlivlktv tqvdylakaf dslcvdlktd
      481 egkalfleyq cvpvilrhlk vssrgllssa ldgllqmtme sgslqpflea csnesffrtc
      541 sallrsskld iqileklcvl lqnlsriksn mkmfelfnlh qtiqelhrta npdhaflcin
      601 lnsillnlgl srsssltssl stsh
//
LOCUS       XP_053931120             606 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 138 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053931120
VERSION     XP_053931120.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075145.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..606
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..606
                     /product="coiled-coil domain-containing protein 138
                     isoform X3"
                     /calculated_mol_wt=68237
     Region          <164..>286
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..606
                     /gene="CCDC138"
                     /coded_by="XM_054075145.1:59..1879"
                     /db_xref="GeneID:104056677"
ORIGIN      
        1 magagpgrgr agdclseaiq tdyksggslv yrghmdisle nttvslskcs seseftesgr
       61 ensirssggf lqnfqdwdcf ddaqdsfsds sgleieekai nyfetgstlp shlaanaren
      121 gdqsiisgli rkimsgtdaq acsskgfipp hinqiydels vihqklqres saqqeyalql
      181 qkrerflier eallfrheaa lakirsveee vhtkfgilke qheaevkqlt ealreitken
      241 rrlklsfdtl kemndslrkq lndvtelnkk legqarkvqa rlenlqlpln sqvyelltfl
      301 mdwisdqhls kikiqeereg srkftvaqtt kkpctqercm kllpmaaeql qwmpfvnpkl
      361 hmpvikfiyw sirqldtgvq haimtstmrr lgedifkgiv skgnphspse qstqsksksa
      421 affksscmpl rflstlivlk tvtqvdylak afdslcvdlk tdegkalfle yqcvpvilrh
      481 lkvssrglls saldgllqmt mesgslqpfl eacsnesffr tcsallrssk ldiqileklc
      541 vllqnlsrik snmkmfelfn lhqtiqelhr tanpdhaflc inlnsillnl glsrssslts
      601 slstsh
//
LOCUS       XP_053931130             590 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 138 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053931130
VERSION     XP_053931130.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075155.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..590
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..590
                     /product="coiled-coil domain-containing protein 138
                     isoform X4"
                     /calculated_mol_wt=66177
     Region          158..237
                     /region_name="Nuf2_DHR10-like"
                     /note="Nuf2, DHR10-like domain; pfam18595"
                     /db_xref="CDD:465814"
     CDS             1..590
                     /gene="CCDC138"
                     /coded_by="XM_054075155.1:60..1832"
                     /db_xref="GeneID:104056677"
ORIGIN      
        1 magagpgrgr agdclseaiq tdyksggslv yrghmdisle nttvslskcs seseftesgr
       61 ensirssggf lqnfqdwdcf ddaqdsfsds sgleieekai nyfetgstlp shlaanaren
      121 gdqsiisgli rkimsgtdaq acsskgfipp hinqiydels vihqklqqhe aevkqlteal
      181 reitkenrrl klsfdtlkem ndslrkqlnd vtelnkkleg qarkvqarle nlqrkhefli
      241 vrkskdvcqv vqqskpvkqe katvtskiak lplnsqvyel ltflmdwisd qhlskikiqe
      301 eregsrkftv aqttkkpctq ercmkllpma aeqlqwmpfv npklhmpvik fiywsirqld
      361 tgvqhaimts tmrrlgedif kgivskgnph spseqstqsk sksaaffkss cmplrflstl
      421 ivlktvtqvd ylakafdslc vdlktdegka lfleyqcvpv ilrhlkvssr gllssaldgl
      481 lqmtmesgsl qpfleacsne sffrtcsall rsskldiqil eklcvllqnl sriksnmkmf
      541 elfnlhqtiq elhrtanpdh aflcinlnsi llnlglsrss sltsslstsh
//
LOCUS       XP_053931139             584 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 138 isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053931139
VERSION     XP_053931139.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075164.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..584
                     /product="coiled-coil domain-containing protein 138
                     isoform X5"
                     /calculated_mol_wt=65971
     Region          <164..>290
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..584
                     /gene="CCDC138"
                     /coded_by="XM_054075164.1:61..1815"
                     /db_xref="GeneID:104056677"
ORIGIN      
        1 magagpgrgr agdclseaiq tdyksggslv yrghmdisle nttvslskcs seseftesgr
       61 ensirssggf lqnfqdwdcf ddaqdsfsds sgleieekai nyfetgstlp shlaanaren
      121 gdqsiisgli rkimsgtdaq acsskgfipp hinqiydels vihqklqres saqqeyalql
      181 qkrerflier eallfrheaa lakirsveee vhtkfgilke qheaevkqlt ealreitken
      241 rrlklsfdtl kemndslrkq lndvtelnkk legqarkvqa rlenlqrkhe flivrkskdv
      301 cqvvqqskpv kqekatvtsk iaklplnsqv yelltflmdw isdqhlskik iqeeregsrk
      361 ftvaqttkkp ctqercmkll pmaaeqlqwm pfvnpklhmp vikfiywsir qldtgvqhai
      421 mtstmrrlge difkgivskg nphspseqst qsksksaaff ksscmplrfl stlivlktvt
      481 qgslqpflea csnesffrtc sallrsskld iqileklcvl lqnlsriksn mkmfelfnlh
      541 qtiqelhrta npdhaflcin lnsillnlgl srsssltssl stsh
//
LOCUS       XP_053931150             510 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 138 isoform X6 [Cuculus
            canorus].
ACCESSION   XP_053931150
VERSION     XP_053931150.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075175.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..510
                     /product="coiled-coil domain-containing protein 138
                     isoform X6"
                     /calculated_mol_wt=58218
     Region          <31..>157
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..510
                     /gene="CCDC138"
                     /coded_by="XM_054075175.1:338..1870"
                     /db_xref="GeneID:104056677"
ORIGIN      
        1 msgtdaqacs skgfipphin qiydelsvih qklqressaq qeyalqlqkr erfliereal
       61 lfrheaalak irsveeevht kfgilkeqhe aevkqlteal reitkenrrl klsfdtlkem
      121 ndslrkqlnd vtelnkkleg qarkvqarle nlqrkhefli vrkskdvcqv vqqskpvkqe
      181 katvtskiak lplnsqvyel ltflmdwisd qhlskikiqe eregsrkftv aqttkkpctq
      241 ercmkllpma aeqlqwmpfv npklhmpvik fiywsirqld tgvqhaimts tmrrlgedif
      301 kgivskgnph spseqstqsk sksaaffkss cmplrflstl ivlktvtqvd ylakafdslc
      361 vdlktdegka lfleyqcvpv ilrhlkvssr gllssaldgl lqmtmesgsl qpfleacsne
      421 sffrtcsall rsskldiqil eklcvllqnl sriksnmkmf elfnlhqtiq elhrtanpdh
      481 aflcinlnsi llnlglsrss sltsslstsh
//
LOCUS       XP_053931159             471 aa            linear   VRT 09-MAR-2023
DEFINITION  tumor necrosis factor receptor superfamily member EDAR isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931159
VERSION     XP_053931159.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075184.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..471
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..471
                     /product="tumor necrosis factor receptor superfamily
                     member EDAR isoform X1"
                     /calculated_mol_wt=52239
     Region          30..165
                     /region_name="TNFRSF_EDAR"
                     /note="Tumor necrosis factor receptor superfamily member
                     ectodysplasin A receptor (EDAR); cd13421"
                     /db_xref="CDD:276926"
     Region          48..88
                     /region_name="CRD1"
                     /note="CRD1 [structural motif]"
                     /db_xref="CDD:276926"
     Region          91..130
                     /region_name="CRD2"
                     /note="CRD2 [structural motif]"
                     /db_xref="CDD:276926"
     Region          133..165
                     /region_name="CRD3"
                     /note="CRD3 [structural motif]"
                     /db_xref="CDD:276926"
     CDS             1..471
                     /gene="EDAR"
                     /coded_by="XM_054075184.1:25..1440"
                     /db_xref="GeneID:104056627"
ORIGIN      
        1 mgmheeqsst mvkyqesmah lgerrwthvf pflvvslvys asaeysncge neyynqttgm
       61 chdcpkcepg eepymtcgyg tkdedygcip cpsekfsrgg yqicrrhkdc egffratvlt
      121 pgdqendaec gpclpgyyml enrprniygm vcyscllapp ntkectgats gisaifpsts
      181 gtstfspyqh ahkadlsgqg hlataliiam stifimaiai vliimfyivk tkpsaqacck
      241 shsvknveaq pntqeekkev qdnvvifsek eefekltatp akavksenda ssenerllsr
      301 smdsdeeaav dkqgtpercl lslvhlardk sstnnkstgi qsrrkkildv yanvcdvaeg
      361 ectklasiln stkldhkhll ykirkasafl enkvsiqkrs lvgifvlicq eapwfpdprv
      421 vlaglgleha taslpacawi sflwrpriav frlvrthtet klqrstlavl i
//
LOCUS       XP_053931165             470 aa            linear   VRT 09-MAR-2023
DEFINITION  tumor necrosis factor receptor superfamily member EDAR isoform X2
            [Cuculus canorus].
ACCESSION   XP_053931165
VERSION     XP_053931165.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075190.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..470
                     /product="tumor necrosis factor receptor superfamily
                     member EDAR isoform X2"
                     /calculated_mol_wt=52168
     Region          30..165
                     /region_name="TNFRSF_EDAR"
                     /note="Tumor necrosis factor receptor superfamily member
                     ectodysplasin A receptor (EDAR); cd13421"
                     /db_xref="CDD:276926"
     Region          48..88
                     /region_name="CRD1"
                     /note="CRD1 [structural motif]"
                     /db_xref="CDD:276926"
     Region          91..130
                     /region_name="CRD2"
                     /note="CRD2 [structural motif]"
                     /db_xref="CDD:276926"
     Region          133..165
                     /region_name="CRD3"
                     /note="CRD3 [structural motif]"
                     /db_xref="CDD:276926"
     CDS             1..470
                     /gene="EDAR"
                     /coded_by="XM_054075190.1:26..1438"
                     /db_xref="GeneID:104056627"
ORIGIN      
        1 mgmheeqsst mvkyqesmah lgerrwthvf pflvvslvys asaeysncge neyynqttgm
       61 chdcpkcepg eepymtcgyg tkdedygcip cpsekfsrgg yqicrrhkdc egffratvlt
      121 pgdqendaec gpclpgyyml enrprniygm vcyscllapp ntkectgats gisaifpsts
      181 gtstfspyqh ahkdlsgqgh lataliiams tifimaiaiv liimfyivkt kpsaqaccks
      241 hsvknveaqp ntqeekkevq dnvvifseke efekltatpa kavksendas senerllsrs
      301 mdsdeeaavd kqgtpercll slvhlardks stnnkstgiq srrkkildvy anvcdvaege
      361 ctklasilns tkldhkhlly kirkasafle nkvsiqkrsl vgifvlicqe apwfpdprvv
      421 laglglehat aslpacawis flwrpriavf rlvrthtetk lqrstlavli
//
LOCUS       XP_009556186             465 aa            linear   VRT 09-MAR-2023
DEFINITION  tumor necrosis factor receptor superfamily member EDAR isoform X3
            [Cuculus canorus].
ACCESSION   XP_009556186
VERSION     XP_009556186.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557891.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556186.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..465
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..465
                     /product="tumor necrosis factor receptor superfamily
                     member EDAR isoform X3"
                     /calculated_mol_wt=51311
     Region          30..165
                     /region_name="TNFRSF_EDAR"
                     /note="Tumor necrosis factor receptor superfamily member
                     ectodysplasin A receptor (EDAR); cd13421"
                     /db_xref="CDD:276926"
     Region          48..88
                     /region_name="CRD1"
                     /note="CRD1 [structural motif]"
                     /db_xref="CDD:276926"
     Region          91..130
                     /region_name="CRD2"
                     /note="CRD2 [structural motif]"
                     /db_xref="CDD:276926"
     Region          133..165
                     /region_name="CRD3"
                     /note="CRD3 [structural motif]"
                     /db_xref="CDD:276926"
     Region          372..446
                     /region_name="DD"
                     /note="Death Domain Superfamily of protein-protein
                     interaction domains; cl14633"
                     /db_xref="CDD:472698"
     CDS             1..465
                     /gene="EDAR"
                     /coded_by="XM_009557891.2:12..1409"
                     /db_xref="GeneID:104056627"
ORIGIN      
        1 mgmheeqsst mvkyqesmah lgerrwthvf pflvvslvys asaeysncge neyynqttgm
       61 chdcpkcepg eepymtcgyg tkdedygcip cpsekfsrgg yqicrrhkdc egffratvlt
      121 pgdqendaec gpclpgyyml enrprniygm vcyscllapp ntkectgats gisaifpsts
      181 gtstfspyqh ahkadlsgqg hlataliiam stifimaiai vliimfyivk tkpsaqacck
      241 shsvknveaq pntqeekkev qdnvvifsek eefekltatp akavksenda ssenerllsr
      301 smdsdeeaav dkqgtpercl lslvhlardk sstnnkstgi qsrrkkildv yanvcdvaeg
      361 lsptelpfdc lektsrmlss tyntekaivk twrhlaesfg lkrdeiggmt dgmqlfdris
      421 tagysipell tklvqierld aveslcadil ewaqampape pagts
//
LOCUS       XP_009556187             464 aa            linear   VRT 09-MAR-2023
DEFINITION  tumor necrosis factor receptor superfamily member EDAR isoform X4
            [Cuculus canorus].
ACCESSION   XP_009556187
VERSION     XP_009556187.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557892.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556187.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..464
                     /product="tumor necrosis factor receptor superfamily
                     member EDAR isoform X4"
                     /calculated_mol_wt=51240
     Region          30..165
                     /region_name="TNFRSF_EDAR"
                     /note="Tumor necrosis factor receptor superfamily member
                     ectodysplasin A receptor (EDAR); cd13421"
                     /db_xref="CDD:276926"
     Region          48..88
                     /region_name="CRD1"
                     /note="CRD1 [structural motif]"
                     /db_xref="CDD:276926"
     Region          91..130
                     /region_name="CRD2"
                     /note="CRD2 [structural motif]"
                     /db_xref="CDD:276926"
     Region          133..165
                     /region_name="CRD3"
                     /note="CRD3 [structural motif]"
                     /db_xref="CDD:276926"
     Region          371..445
                     /region_name="DD"
                     /note="Death Domain Superfamily of protein-protein
                     interaction domains; cl14633"
                     /db_xref="CDD:472698"
     CDS             1..464
                     /gene="EDAR"
                     /coded_by="XM_009557892.2:13..1407"
                     /db_xref="GeneID:104056627"
ORIGIN      
        1 mgmheeqsst mvkyqesmah lgerrwthvf pflvvslvys asaeysncge neyynqttgm
       61 chdcpkcepg eepymtcgyg tkdedygcip cpsekfsrgg yqicrrhkdc egffratvlt
      121 pgdqendaec gpclpgyyml enrprniygm vcyscllapp ntkectgats gisaifpsts
      181 gtstfspyqh ahkdlsgqgh lataliiams tifimaiaiv liimfyivkt kpsaqaccks
      241 hsvknveaqp ntqeekkevq dnvvifseke efekltatpa kavksendas senerllsrs
      301 mdsdeeaavd kqgtpercll slvhlardks stnnkstgiq srrkkildvy anvcdvaegl
      361 sptelpfdcl ektsrmlsst yntekaivkt wrhlaesfgl krdeiggmtd gmqlfdrist
      421 agysipellt klvqierlda veslcadile waqampapep agts
//
LOCUS       XP_053931182             454 aa            linear   VRT 09-MAR-2023
DEFINITION  tumor necrosis factor receptor superfamily member EDAR isoform X5
            [Cuculus canorus].
ACCESSION   XP_053931182
VERSION     XP_053931182.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075207.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..454
                     /product="tumor necrosis factor receptor superfamily
                     member EDAR isoform X5"
                     /calculated_mol_wt=50255
     Region          13..148
                     /region_name="TNFRSF_EDAR"
                     /note="Tumor necrosis factor receptor superfamily member
                     ectodysplasin A receptor (EDAR); cd13421"
                     /db_xref="CDD:276926"
     Region          31..71
                     /region_name="CRD1"
                     /note="CRD1 [structural motif]"
                     /db_xref="CDD:276926"
     Region          74..113
                     /region_name="CRD2"
                     /note="CRD2 [structural motif]"
                     /db_xref="CDD:276926"
     Region          116..148
                     /region_name="CRD3"
                     /note="CRD3 [structural motif]"
                     /db_xref="CDD:276926"
     CDS             1..454
                     /gene="EDAR"
                     /coded_by="XM_054075207.1:314..1678"
                     /db_xref="GeneID:104056627"
ORIGIN      
        1 mahlgerrwt hvfpflvvsl vysasaeysn cgeneyynqt tgmchdcpkc epgeepymtc
       61 gygtkdedyg cipcpsekfs rggyqicrrh kdcegffrat vltpgdqend aecgpclpgy
      121 ymlenrprni ygmvcyscll appntkectg atsgisaifp stsgtstfsp yqhahkadls
      181 gqghlatali iamstifima iaivliimfy ivktkpsaqa cckshsvknv eaqpntqeek
      241 kevqdnvvif sekeefeklt atpakavkse ndassenerl lsrsmdsdee aavdkqgtpe
      301 rcllslvhla rdksstnnks tgiqsrrkki ldvyanvcdv aegectklas ilnstkldhk
      361 hllykirkas aflenkvsiq krslvgifvl icqeapwfpd prvvlaglgl ehataslpac
      421 awisflwrpr iavfrlvrth tetklqrstl avli
//
LOCUS       XP_053931228             349 aa            linear   VRT 09-MAR-2023
DEFINITION  MANSC domain-containing protein 4 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931228
VERSION     XP_053931228.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075253.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..349
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..349
                     /product="MANSC domain-containing protein 4 isoform X1"
                     /calculated_mol_wt=38786
     Region          29..117
                     /region_name="MANEC"
                     /note="MANEC domain; cl06508"
                     /db_xref="CDD:471454"
     CDS             1..349
                     /gene="MANSC4"
                     /coded_by="XM_054075253.1:316..1365"
                     /db_xref="GeneID:104066611"
ORIGIN      
        1 mvllvaiagv llvlglales dslcspttfy kncwirrfpg llidlqesqk rgahvlkiya
       61 easpqqcsrt ccllrnvscn lavfyhgain enmnclhmsc palescilka rinvilynit
      121 pgidpdllif ekltskepnt hsspsnyety nstkttewer cqrhnatsss lllqapfstt
      181 snglkahtri lstslkvkkl evtthswtet fplddhfakq tsttavttks itssdmkteh
      241 stlisksaev lshmptpprl nsskqhlnet kgysgrnyts dneapaweaa tlgvwlipiv
      301 lcssliflcc ctvaftagrc rnrrgqykpi rrttksrqfi kyttvkgnl
//
LOCUS       XP_053931237             344 aa            linear   VRT 09-MAR-2023
DEFINITION  MANSC domain-containing protein 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931237
VERSION     XP_053931237.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075262.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..344
                     /product="MANSC domain-containing protein 4 isoform X2"
                     /calculated_mol_wt=38268
     Region          30..112
                     /region_name="MANEC"
                     /note="MANEC domain; cl06508"
                     /db_xref="CDD:471454"
     CDS             1..344
                     /gene="MANSC4"
                     /coded_by="XM_054075262.1:127..1161"
                     /db_xref="GeneID:104066611"
ORIGIN      
        1 mkcwpgsgqr llnnskslli ppcrahgtvs hwfagllidl qesqkrgahv lkiyaeaspq
       61 qcsrtccllr nvscnlavfy hgainenmnc lhmscpales cilkarinvi lynitpgidp
      121 dllifeklts kepnthssps nyetynstkt tewercqrhn atssslllqa pfsttsnglk
      181 ahtrilstsl kvkklevtth swtetfpldd hfakqtstta vttksitssd mktehstlis
      241 ksaevlshmp tpprlnsskq hlnetkgysg rnytsdneap aweaatlgvw lipivlcssl
      301 iflccctvaf tagrcrnrrg qykpirrttk srqfikyttv kgnl
//
LOCUS       XP_053931243             344 aa            linear   VRT 09-MAR-2023
DEFINITION  MANSC domain-containing protein 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931243
VERSION     XP_053931243.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075268.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..344
                     /product="MANSC domain-containing protein 4 isoform X2"
                     /calculated_mol_wt=38268
     Region          30..112
                     /region_name="MANEC"
                     /note="MANEC domain; cl06508"
                     /db_xref="CDD:471454"
     CDS             1..344
                     /gene="MANSC4"
                     /coded_by="XM_054075268.1:247..1281"
                     /db_xref="GeneID:104066611"
ORIGIN      
        1 mkcwpgsgqr llnnskslli ppcrahgtvs hwfagllidl qesqkrgahv lkiyaeaspq
       61 qcsrtccllr nvscnlavfy hgainenmnc lhmscpales cilkarinvi lynitpgidp
      121 dllifeklts kepnthssps nyetynstkt tewercqrhn atssslllqa pfsttsnglk
      181 ahtrilstsl kvkklevtth swtetfpldd hfakqtstta vttksitssd mktehstlis
      241 ksaevlshmp tpprlnsskq hlnetkgysg rnytsdneap aweaatlgvw lipivlcssl
      301 iflccctvaf tagrcrnrrg qykpirrttk srqfikyttv kgnl
//
LOCUS       XP_053931252             344 aa            linear   VRT 09-MAR-2023
DEFINITION  MANSC domain-containing protein 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931252
VERSION     XP_053931252.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075277.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..344
                     /product="MANSC domain-containing protein 4 isoform X2"
                     /calculated_mol_wt=38268
     Region          30..112
                     /region_name="MANEC"
                     /note="MANEC domain; cl06508"
                     /db_xref="CDD:471454"
     CDS             1..344
                     /gene="MANSC4"
                     /coded_by="XM_054075277.1:80..1114"
                     /db_xref="GeneID:104066611"
ORIGIN      
        1 mkcwpgsgqr llnnskslli ppcrahgtvs hwfagllidl qesqkrgahv lkiyaeaspq
       61 qcsrtccllr nvscnlavfy hgainenmnc lhmscpales cilkarinvi lynitpgidp
      121 dllifeklts kepnthssps nyetynstkt tewercqrhn atssslllqa pfsttsnglk
      181 ahtrilstsl kvkklevtth swtetfpldd hfakqtstta vttksitssd mktehstlis
      241 ksaevlshmp tpprlnsskq hlnetkgysg rnytsdneap aweaatlgvw lipivlcssl
      301 iflccctvaf tagrcrnrrg qykpirrttk srqfikyttv kgnl
//
LOCUS       XP_053931263             344 aa            linear   VRT 09-MAR-2023
DEFINITION  MANSC domain-containing protein 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931263
VERSION     XP_053931263.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075288.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..344
                     /product="MANSC domain-containing protein 4 isoform X2"
                     /calculated_mol_wt=38268
     Region          30..112
                     /region_name="MANEC"
                     /note="MANEC domain; cl06508"
                     /db_xref="CDD:471454"
     CDS             1..344
                     /gene="MANSC4"
                     /coded_by="XM_054075288.1:139..1173"
                     /db_xref="GeneID:104066611"
ORIGIN      
        1 mkcwpgsgqr llnnskslli ppcrahgtvs hwfagllidl qesqkrgahv lkiyaeaspq
       61 qcsrtccllr nvscnlavfy hgainenmnc lhmscpales cilkarinvi lynitpgidp
      121 dllifeklts kepnthssps nyetynstkt tewercqrhn atssslllqa pfsttsnglk
      181 ahtrilstsl kvkklevtth swtetfpldd hfakqtstta vttksitssd mktehstlis
      241 ksaevlshmp tpprlnsskq hlnetkgysg rnytsdneap aweaatlgvw lipivlcssl
      301 iflccctvaf tagrcrnrrg qykpirrttk srqfikyttv kgnl
//
LOCUS       XP_053931271             344 aa            linear   VRT 09-MAR-2023
DEFINITION  MANSC domain-containing protein 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931271
VERSION     XP_053931271.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075296.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..344
                     /product="MANSC domain-containing protein 4 isoform X2"
                     /calculated_mol_wt=38268
     Region          30..112
                     /region_name="MANEC"
                     /note="MANEC domain; cl06508"
                     /db_xref="CDD:471454"
     CDS             1..344
                     /gene="MANSC4"
                     /coded_by="XM_054075296.1:128..1162"
                     /db_xref="GeneID:104066611"
ORIGIN      
        1 mkcwpgsgqr llnnskslli ppcrahgtvs hwfagllidl qesqkrgahv lkiyaeaspq
       61 qcsrtccllr nvscnlavfy hgainenmnc lhmscpales cilkarinvi lynitpgidp
      121 dllifeklts kepnthssps nyetynstkt tewercqrhn atssslllqa pfsttsnglk
      181 ahtrilstsl kvkklevtth swtetfpldd hfakqtstta vttksitssd mktehstlis
      241 ksaevlshmp tpprlnsskq hlnetkgysg rnytsdneap aweaatlgvw lipivlcssl
      301 iflccctvaf tagrcrnrrg qykpirrttk srqfikyttv kgnl
//
LOCUS       XP_053931280             312 aa            linear   VRT 09-MAR-2023
DEFINITION  MANSC domain-containing protein 4 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931280
VERSION     XP_053931280.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075305.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..312
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..312
                     /product="MANSC domain-containing protein 4 isoform X3"
                     /calculated_mol_wt=34714
     Region          1..80
                     /region_name="MANEC"
                     /note="MANEC domain; cl06508"
                     /db_xref="CDD:471454"
     CDS             1..312
                     /gene="MANSC4"
                     /coded_by="XM_054075305.1:203..1141"
                     /db_xref="GeneID:104066611"
ORIGIN      
        1 meqsvtglqe sqkrgahvlk iyaeaspqqc srtccllrnv scnlavfyhg ainenmnclh
       61 mscpalesci lkarinvily nitpgidpdl lifekltske pnthsspsny etynstktte
      121 wercqrhnat ssslllqapf sttsnglkah trilstslkv kklevtthsw tetfplddhf
      181 akqtsttavt tksitssdmk tehstlisks aevlshmptp prlnsskqhl netkgysgrn
      241 ytsdneapaw eaatlgvwli pivlcsslif lccctvafta grcrnrrgqy kpirrttksr
      301 qfikyttvkg nl
//
LOCUS       XP_053931291             307 aa            linear   VRT 09-MAR-2023
DEFINITION  MANSC domain-containing protein 4 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931291
VERSION     XP_053931291.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075316.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..307
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..307
                     /product="MANSC domain-containing protein 4 isoform X4"
                     /calculated_mol_wt=34142
     Region          <36..75
                     /region_name="MANEC"
                     /note="MANEC domain; cl06508"
                     /db_xref="CDD:471454"
     CDS             1..307
                     /gene="MANSC4"
                     /coded_by="XM_054075316.1:127..1050"
                     /db_xref="GeneID:104066611"
ORIGIN      
        1 mkcwpgsgqr llnnskslli ppcrahgtvs hwfavscnla vfyhgainen mnclhmscpa
       61 lescilkari nvilynitpg idpdllifek ltskepnths spsnyetyns tkttewercq
      121 rhnatsssll lqapfsttsn glkahtrils tslkvkklev tthswtetfp lddhfakqts
      181 ttavttksit ssdmktehst lisksaevls hmptpprlns skqhlnetkg ysgrnytsdn
      241 eapaweaatl gvwlipivlc ssliflccct vaftagrcrn rrgqykpirr ttksrqfiky
      301 ttvkgnl
//
LOCUS       XP_053931302             285 aa            linear   VRT 09-MAR-2023
DEFINITION  MANSC domain-containing protein 4 isoform X5 [Cuculus canorus].
ACCESSION   XP_053931302
VERSION     XP_053931302.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075327.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..285
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..285
                     /product="MANSC domain-containing protein 4 isoform X5"
                     /calculated_mol_wt=31603
     Region          29..117
                     /region_name="MANEC"
                     /note="MANEC domain; cl06508"
                     /db_xref="CDD:471454"
     CDS             1..285
                     /gene="MANSC4"
                     /coded_by="XM_054075327.1:316..1173"
                     /db_xref="GeneID:104066611"
ORIGIN      
        1 mvllvaiagv llvlglales dslcspttfy kncwirrfpg llidlqesqk rgahvlkiya
       61 easpqqcsrt ccllrnvscn lavfyhgain enmnclhmsc palescilka rinvilynit
      121 pgidpdllif ekltskepnt hsspsnyety nstkttewer cqrhnatsss lllqapfstt
      181 snglkahtri lstslkvkkl evtthswtet fplddhfakq tsttavttks itssdmkteh
      241 stlisksaev lshmptpprl nssfkeksah hlflpashkk icriv
//
LOCUS       XP_053931313             264 aa            linear   VRT 09-MAR-2023
DEFINITION  MANSC domain-containing protein 4 isoform X6 [Cuculus canorus].
ACCESSION   XP_053931313
VERSION     XP_053931313.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075338.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..264
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..264
                     /product="MANSC domain-containing protein 4 isoform X6"
                     /calculated_mol_wt=29178
     Region          29..117
                     /region_name="MANEC"
                     /note="MANEC domain; cl06508"
                     /db_xref="CDD:471454"
     CDS             1..264
                     /gene="MANSC4"
                     /coded_by="XM_054075338.1:316..1110"
                     /db_xref="GeneID:104066611"
ORIGIN      
        1 mvllvaiagv llvlglales dslcspttfy kncwirrfpg llidlqesqk rgahvlkiya
       61 easpqqcsrt ccllrnvscn lavfyhgain enmnclhmsc palescilka rinvilynit
      121 pgidpdllif ekltskepnt hsspsnyety nstkttewer cqrhnatsss lllqapfstt
      181 snglkahtri lstslkvkkl evtthswtet fplddhfakq tsttavttks itssdmkteh
      241 stlisksaev lshmptpprl nssf
//
LOCUS       XP_053931326             331 aa            linear   VRT 09-MAR-2023
DEFINITION  28S ribosomal protein S35, mitochondrial isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053931326
VERSION     XP_053931326.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075351.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..331
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..331
                     /product="28S ribosomal protein S35, mitochondrial isoform
                     X1"
                     /calculated_mol_wt=37208
     Region          155..>240
                     /region_name="MRP-S28"
                     /note="Mitochondrial ribosomal subunit protein; pfam10213"
                     /db_xref="CDD:463002"
     CDS             1..331
                     /gene="MRPS35"
                     /coded_by="XM_054075351.1:25..1020"
                     /db_xref="GeneID:104066629"
ORIGIN      
        1 mvmavaagrw aalsqaaaap rlraaalssa vpavsgregq preastrrrg rtpqfvrsqa
       61 pprtermavd qdwtsvypta aafkpasvpl pirmgypvkr gvppskegnl elikipnflh
      121 ltppaikkhc aalkdfctew psaldsdekc eqhfpietet tdyvsagtsi rnpkarvvtl
      181 rvklsklnld ehakkklikl vgeryckdtd iltittdrcp lrrqnydygi hlltvlyhes
      241 wktemwesek seedmeeyiw ensrsqknal dtllrikase nvsnvteeel lasdlvndyr
      301 nsvialkneg etennmsryk esvkkllnvk a
//
LOCUS       XP_053931336             265 aa            linear   VRT 09-MAR-2023
DEFINITION  28S ribosomal protein S35, mitochondrial isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053931336
VERSION     XP_053931336.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075361.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..265
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..265
                     /product="28S ribosomal protein S35, mitochondrial isoform
                     X2"
                     /calculated_mol_wt=30229
     Region          89..>174
                     /region_name="MRP-S28"
                     /note="Mitochondrial ribosomal subunit protein; pfam10213"
                     /db_xref="CDD:463002"
     CDS             1..265
                     /gene="MRPS35"
                     /coded_by="XM_054075361.1:340..1137"
                     /db_xref="GeneID:104066629"
ORIGIN      
        1 mavdqdwtsv yptaaafkpa svplpirmgy pvkrgvppsk egnlelikip nflhltppai
       61 kkhcaalkdf ctewpsalds dekceqhfpi etettdyvsa gtsirnpkar vvtlrvklsk
      121 lnldehakkk liklvgeryc kdtdiltitt drcplrrqny dygihlltvl yheswktemw
      181 esekseedme eyiwensrsq knaldtllri kasenvsnvt eeellasdlv ndyrnsvial
      241 knegetennm srykesvkkl lnvka
//
LOCUS       XP_053931348             469 aa            linear   VRT 09-MAR-2023
DEFINITION  sorting and assembly machinery component 50 homolog [Cuculus
            canorus].
ACCESSION   XP_053931348
VERSION     XP_053931348.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075373.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..469
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..469
                     /product="sorting and assembly machinery component 50
                     homolog"
                     /calculated_mol_wt=52263
     Region          151..463
                     /region_name="Omp85"
                     /note="Omp85 superfamily domain; pfam01103"
                     /db_xref="CDD:460065"
     CDS             1..469
                     /gene="SAMM50"
                     /coded_by="XM_054075373.1:138..1547"
                     /db_xref="GeneID:104067337"
ORIGIN      
        1 mgtvharsle plpmsgpdfs algeqaelve vepeakqeil enkdvvvqhv hfdglgrtkd
       61 diimyeiadv fkaknlidvm rkshearekl lhlgifrqve vlidtcqgdd alpngldvtf
      121 evtelrrltg syntmvgnne gsmvlglkfp nlfgraekvt fqfsygtket syglsffkpq
      181 pgnfernfsv nlykvtgqfp wsslretdrg istefnlpiw ktnhtlkweg vwrelgclar
      241 tasfsvrees ghslksslfh amvidsrsss ilprrgallk inqelagytg gdvsflkedf
      301 efqlnkqliw dsvfsaslwg gmlipigdkp ssiadrfylg gptsvrgfsm ysigpqsegd
      361 ylggeaywag glhlytplpf rpgrggfgdl frthfflnag nlcnlnygdg prahlqklae
      421 yirwsygagi vlrlgniarl elnycfpmav qsgdricdgv qfgagirfl
//
LOCUS       XP_009558219             181 aa            linear   VRT 09-MAR-2023
DEFINITION  diphosphoinositol polyphosphate phosphohydrolase 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_009558219
VERSION     XP_009558219.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009559924.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..181
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..181
                     /product="diphosphoinositol polyphosphate phosphohydrolase
                     2 isoform X1"
                     /calculated_mol_wt=20477
     Region          19..144
                     /region_name="NUDIX_DIPP2_like_Nudt4"
                     /note="diadenosine 5',5'''-P1,P6-hexaphosphate hydrolase
                     type 2 and similar proteins; cd04666"
                     /db_xref="CDD:467551"
     CDS             1..181
                     /gene="NUDT4"
                     /coded_by="XM_009559924.2:273..818"
                     /db_xref="GeneID:104058419"
ORIGIN      
        1 mmkfkpnqtr tydregykkr aaclcfrser edevllvsss rypdqwivpg ggmepeeepg
       61 gaavrevyee agvkgklgrl lgifeqnqdr khrtyvyvlt vteiledwed svnigrkrew
      121 fkvedaikvl qchkpvhaey leklklscsp tngnsvvppl pdnnslyvts aqtsglpstv
      181 r
//
LOCUS       XP_009558220             180 aa            linear   VRT 09-MAR-2023
DEFINITION  diphosphoinositol polyphosphate phosphohydrolase 2 isoform X2
            [Cuculus canorus].
ACCESSION   XP_009558220
VERSION     XP_009558220.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009559925.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..180
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..180
                     /product="diphosphoinositol polyphosphate phosphohydrolase
                     2 isoform X2"
                     /calculated_mol_wt=20349
     Region          19..143
                     /region_name="NUDIX_DIPP2_like_Nudt4"
                     /note="diadenosine 5',5'''-P1,P6-hexaphosphate hydrolase
                     type 2 and similar proteins; cd04666"
                     /db_xref="CDD:467551"
     CDS             1..180
                     /gene="NUDT4"
                     /coded_by="XM_009559925.2:271..813"
                     /db_xref="GeneID:104058419"
ORIGIN      
        1 mmkfkpnqtr tydregykkr aaclcfrser edevllvsss rypdqwivpg ggmepeeepg
       61 gaavrevyee agvkgklgrl lgifenqdrk hrtyvyvltv teiledweds vnigrkrewf
      121 kvedaikvlq chkpvhaeyl eklklscspt ngnsvvpplp dnnslyvtsa qtsglpstvr
//
LOCUS       XP_053931373             129 aa            linear   VRT 09-MAR-2023
DEFINITION  diphosphoinositol polyphosphate phosphohydrolase 2 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053931373
VERSION     XP_053931373.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075398.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..129
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..129
                     /product="diphosphoinositol polyphosphate phosphohydrolase
                     2 isoform X3"
                     /calculated_mol_wt=14394
     Region          <1..92
                     /region_name="NUDIX_DIPP2_like_Nudt4"
                     /note="diadenosine 5',5'''-P1,P6-hexaphosphate hydrolase
                     type 2 and similar proteins; cd04666"
                     /db_xref="CDD:467551"
     CDS             1..129
                     /gene="NUDT4"
                     /coded_by="XM_054075398.1:82..471"
                     /db_xref="GeneID:104058419"
ORIGIN      
        1 mepeeepgga avrevyeeag vkgklgrllg ifeqnqdrkh rtyvyvltvt eiledwedsv
       61 nigrkrewfk vedaikvlqc hkpvhaeyle klklscsptn gnsvvpplpd nnslyvtsaq
      121 tsglpstvr
//
LOCUS       XP_053931473            1829 aa            linear   VRT 09-MAR-2023
DEFINITION  cilia- and flagella-associated protein 44 [Cuculus canorus].
ACCESSION   XP_053931473
VERSION     XP_053931473.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075498.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1829
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1829
                     /product="cilia- and flagella-associated protein 44"
                     /calculated_mol_wt=210851
     Region          165..204
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          210..249
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <215..578
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          254..294
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          400..447
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          452..486
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          494..550
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          546..>618
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cl29593"
                     /db_xref="CDD:475233"
     Region          557..593
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          599..646
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          776..819
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          828..869
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1084..>1801
                     /region_name="CCDC158"
                     /note="Coiled-coil domain-containing protein 158;
                     pfam15921"
                     /db_xref="CDD:464943"
     Region          1485..>1807
                     /region_name="PRK03918"
                     /note="DNA double-strand break repair ATPase Rad50"
                     /db_xref="CDD:235175"
     CDS             1..1829
                     /gene="CFAP44"
                     /coded_by="XM_054075498.1:1..5490"
                     /db_xref="GeneID:104055850"
ORIGIN      
        1 mpsfvkgqeg adekpaegaq adhsgvqesk islpkespta eeeeeeveqv esdnegvegd
       61 ledqnsgevp lkaqktpekv erkisetffy nyedicsqpf itedsgipin lltlkhslgy
      121 ectrsvnlll mdsqtlmyia gnqvvlldlk tksqsyirss sgggigfita hptrqyfavg
      181 ekgkkpnlii yhfpslrpyr ilqggteeay vfgdfnhagt llasvgsspd ymltiwdwkq
      241 ekimlrskaf sqdvykvtfs adneqqltta gaghirfwkm altftglklq galgrfgkta
      301 vtdiigyvel pdgrvisgte wgnlllwegg likvelcrag rkpchsgpvs qlvldegelf
      361 tvgkdgsirv wnfetidaad svddtgllev epmnelrvgr nvslsfmskv desgqpvwya
      421 qdtngaiwkl dltfsnvsrd peclytfhsg giealsvspv tyllattald rsvriydfis
      481 nsqlseikfk qggtallwap rvvnpkggli avgfedgvvr iievydpkgl pvlagqtnte
      541 nakinlkqaf kphsaavtal ayerngdvla tgskdktvff favedeykpi gficvpgpvr
      601 alqwsppshv nsmllilcen gfalqvpapl peekdtmsty qiknlpiqcf hfcsiksqik
      661 lkeeialrek kkqeeekakl ewikqqqemg keveeeelee epeeeplppl yipeepspil
      721 cgfystpgkf wlslggydsg flyhcefsnd hqedlenred kpfevipied tdnnpvhqis
      781 fctsrllmfc gmqngalrvy plqdkdlsvh tmkeywsfnv hdndygqiqg iccsyddrfl
      841 itcgrdgnif tfnilssedv hkelktkips prsglekeka aediedpnay nieevkqkte
      901 yerimkeaee kktkkrkeln alrhefllll qknqelpkhm qlhrdqfemd hrifeeldrq
      961 taqriqlvqk emawerekhl lglqklqkqf rdslefdtvv vhaiqsnhqi styrllaise
     1021 kyyqdkehss wkravlkqsw kqteekeivr gtrhpdaiif egeakklkts evqkrsihyi
     1081 erkrekirri vekfdevkak ivkrkaewde lyqskprdvy qsprdvedtr eaqenmgcye
     1141 lkaatnyrvp ehkrmdaakk mlqltslevl ihkkkvnmnk eilslrdlki siieeikslv
     1201 qelksiqatl dlserlplpl ipqlhpdevp ekkfecdsdv llkfkeeqet kaklqeqleg
     1261 spsssafrhg flhapsvkqm elrepatgvc smktassvvt eqqkvfemek aeptemelei
     1321 lqkekiknly lqetlikkin tlvinfdael cflrhkklkl dvqmksadlh yitwyeelli
     1381 lkklekhekl lhervntlis eqealqskln snlaqmkdrk ceivklqeck kalhanfqas
     1441 lgennefadf lakvlmkkin cmeekgvere edeedkdeee ddeesslgsh eentesedfd
     1501 dsvcpkncne alfhntiqlr qkwldiekal teekkvaakl rkqykalake akevetclnt
     1561 tdreletfqw ekqqrlnely vavplklhqv eylvdgemps dfsqalvftk qsleylqkrv
     1621 vdlrnekimq reiykkaqeq hkqlvqdkke meikirrlee kckqlmmlkf grlvdfeavq
     1681 ehsvnirrek lkvqimekey ehsqelkkwe eriselqqql mkltkentsk lqqlnhfcqe
     1741 kqqlemklal lkndlvgeef qgirttdike ktklesqlky laresaflre einllrrkdg
     1801 sirqeialls rknwqlfqqp sapqdsatn
//
LOCUS       XP_053931484            1189 aa            linear   VRT 09-MAR-2023
DEFINITION  brother of CDO isoform X1 [Cuculus canorus].
ACCESSION   XP_053931484
VERSION     XP_053931484.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075509.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1189
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1189
                     /product="brother of CDO isoform X1"
                     /calculated_mol_wt=130148
     Region          91..154
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          99..103
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          111..115
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          135..139
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          149..154
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          183..250
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          192..196
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409358"
     Region          206..210
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409358"
     Region          229..233
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409358"
     Region          243..248
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409358"
     Region          285..354
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          294..298
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          307..311
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          322..332
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          342..347
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          369..452
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          386..390
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:143205"
     Region          399..403
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:143205"
     Region          420..424
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:143205"
     Region          434..439
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:143205"
     Region          447..450
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:143205"
     Region          455..518
                     /region_name="ISET-FN3_linker"
                     /note="Unstructured linking region I-set and fnIII on
                     Brother of CDO; pfam16625"
                     /db_xref="CDD:435475"
     Region          <538..634
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          683..770
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(683,750,765)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(766..767,769..770)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          789..886
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(789,859,874)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(875..876,878..879)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1189
                     /gene="BOC"
                     /coded_by="XM_054075509.1:121..3690"
                     /db_xref="GeneID:104055790"
ORIGIN      
        1 mkrdlgcgrl tqpqtafrci ricyristas peaaygtlpw vslpqdtlhg mamthgkkrp
       61 mspipclilv atscfaklse slqvtvqpas ivqklggpvs lrcvvdpprv nltwrlngke
      121 lagsdkvlgi hiergklivm alnnhtvgry qciarvpegv iasvpavvtl anlkdfkfdg
      181 qhvievdegn taviacdlpe shpkaqvrys vkqewleasr dnylimpsgn lqivnasqed
      241 egtykcaayn pvtqevktsv sserlrvrrs taeaariiyp peaqtiivtk gqslilecva
      301 sgippprvtw akdgssvsay nktrfllsnl lidttseeds gtysctadng vgeagaafif
      361 ynvqvfeppe vtmelsqqii pwgqsakftc evrgnpqpsv mwlrnavpls tshrlrlsrk
      421 alrlvsvgpe ddgiyqcmae nevgsaqamv qlrtarpgat ltpgrdahlg saqpptppsr
      481 dstlklpldk vglprpgatp laasqqcaan gelvspaeap iilssprtsk tdsydlvwrp
      541 rpdsrapily yvvkhrkvsl frpapifplr rstgglvasl hvftpreqqv tnasdnwavr
      601 dipasqhrlt ltrldpgsly evemaahnca gegqtamvtf rtgkgrrpkp eivaskeqqi
      661 qrddpgtstq ssnqsdnsrl sppeapdrpt ismasetsvy vtwiprgngg fpiqsfrvey
      721 kklkkqgdwv latsdippsr lsveipglek gisykfrvra lnilgeseps aasrpyvvng
      781 yntrayerpv agpyitftda inettimlkw myvpasnnnt pihgfyiyyr ptdsdndsdy
      841 kkdvvegdry whsishlqpe tsydikmqcf neggesefsn vmicetkark slglpgrlpp
      901 stvspqqrpp fsgghsglgt gamvarssdl pylivgvvlg sivllivafi pfclwrawsk
      961 qkqtidmgfp gagllvsscq ytmvplrgvs apranghpya ngqpytsgah lngicppagv
     1021 gyastkprdy rpdevaqshe etnallqtrv lqngnaqqdy qpsrlpnsrt edssflyslp
     1081 ddsthqllqp qddcphlqeh fgglhhpvms skvgvptlda rrdplfhqgt pcclglvpve
     1141 everldccqs rgdlhpqnpv itslgqdlpr hlnssppplr sletrspts
//
LOCUS       XP_053931491            1188 aa            linear   VRT 09-MAR-2023
DEFINITION  brother of CDO isoform X2 [Cuculus canorus].
ACCESSION   XP_053931491
VERSION     XP_053931491.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075516.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1188
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1188
                     /product="brother of CDO isoform X2"
                     /calculated_mol_wt=130020
     Region          91..154
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          99..103
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          111..115
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          135..139
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          149..154
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          183..250
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          192..196
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409358"
     Region          206..210
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409358"
     Region          229..233
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409358"
     Region          243..248
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409358"
     Region          285..354
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          294..298
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          307..311
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          322..332
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          342..347
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          369..452
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          386..390
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:143205"
     Region          399..403
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:143205"
     Region          420..424
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:143205"
     Region          434..439
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:143205"
     Region          447..450
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:143205"
     Region          455..518
                     /region_name="ISET-FN3_linker"
                     /note="Unstructured linking region I-set and fnIII on
                     Brother of CDO; pfam16625"
                     /db_xref="CDD:435475"
     Region          <538..633
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          682..769
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(682,749,764)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(765..766,768..769)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          788..885
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(788,858,873)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(874..875,877..878)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1188
                     /gene="BOC"
                     /coded_by="XM_054075516.1:121..3687"
                     /db_xref="GeneID:104055790"
ORIGIN      
        1 mkrdlgcgrl tqpqtafrci ricyristas peaaygtlpw vslpqdtlhg mamthgkkrp
       61 mspipclilv atscfaklse slqvtvqpas ivqklggpvs lrcvvdpprv nltwrlngke
      121 lagsdkvlgi hiergklivm alnnhtvgry qciarvpegv iasvpavvtl anlkdfkfdg
      181 qhvievdegn taviacdlpe shpkaqvrys vkqewleasr dnylimpsgn lqivnasqed
      241 egtykcaayn pvtqevktsv sserlrvrrs taeaariiyp peaqtiivtk gqslilecva
      301 sgippprvtw akdgssvsay nktrfllsnl lidttseeds gtysctadng vgeagaafif
      361 ynvqvfeppe vtmelsqqii pwgqsakftc evrgnpqpsv mwlrnavpls tshrlrlsrk
      421 alrlvsvgpe ddgiyqcmae nevgsaqamv qlrtarpgat ltpgrdahlg saqpptppsr
      481 dstlklpldk vglprpgatp laasqqcaan gelvspaeap iilssprtsk tdsydlvwrp
      541 rpdsrapily yvvkhrkvsl frpapifplr rstgglvasl hvftpreqvt nasdnwavrd
      601 ipasqhrltl trldpgslye vemaahncag egqtamvtfr tgkgrrpkpe ivaskeqqiq
      661 rddpgtstqs snqsdnsrls ppeapdrpti smasetsvyv twiprgnggf piqsfrveyk
      721 klkkqgdwvl atsdippsrl sveipglekg isykfrvral nilgesepsa asrpyvvngy
      781 ntrayerpva gpyitftdai nettimlkwm yvpasnnntp ihgfyiyyrp tdsdndsdyk
      841 kdvvegdryw hsishlqpet sydikmqcfn eggesefsnv micetkarks lglpgrlpps
      901 tvspqqrppf sgghsglgtg amvarssdlp ylivgvvlgs ivllivafip fclwrawskq
      961 kqtidmgfpg agllvsscqy tmvplrgvsa pranghpyan gqpytsgahl ngicppagvg
     1021 yastkprdyr pdevaqshee tnallqtrvl qngnaqqdyq psrlpnsrte dssflyslpd
     1081 dsthqllqpq ddcphlqehf gglhhpvmss kvgvptldar rdplfhqgtp cclglvpvee
     1141 verldccqsr gdlhpqnpvi tslgqdlprh lnssppplrs letrspts
//
LOCUS       XP_053931500            1187 aa            linear   VRT 09-MAR-2023
DEFINITION  brother of CDO isoform X3 [Cuculus canorus].
ACCESSION   XP_053931500
VERSION     XP_053931500.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075525.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1187
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1187
                     /product="brother of CDO isoform X3"
                     /calculated_mol_wt=129963
     Region          91..154
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          99..103
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          111..115
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          135..139
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          149..154
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          183..250
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          192..196
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409358"
     Region          206..210
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409358"
     Region          229..233
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409358"
     Region          243..248
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409358"
     Region          285..354
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          294..298
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          307..311
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          322..332
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          342..347
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          369..452
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          386..390
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:143205"
     Region          399..403
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:143205"
     Region          420..424
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:143205"
     Region          434..439
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:143205"
     Region          447..450
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:143205"
     Region          455..518
                     /region_name="ISET-FN3_linker"
                     /note="Unstructured linking region I-set and fnIII on
                     Brother of CDO; pfam16625"
                     /db_xref="CDD:435475"
     Region          <538..634
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          681..768
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(681,748,763)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(764..765,767..768)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          787..884
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(787,857,872)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(873..874,876..877)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1187
                     /gene="BOC"
                     /coded_by="XM_054075525.1:115..3678"
                     /db_xref="GeneID:104055790"
ORIGIN      
        1 mkrdlgcgrl tqpqtafrci ricyristas peaaygtlpw vslpqdtlhg mamthgkkrp
       61 mspipclilv atscfaklse slqvtvqpas ivqklggpvs lrcvvdpprv nltwrlngke
      121 lagsdkvlgi hiergklivm alnnhtvgry qciarvpegv iasvpavvtl anlkdfkfdg
      181 qhvievdegn taviacdlpe shpkaqvrys vkqewleasr dnylimpsgn lqivnasqed
      241 egtykcaayn pvtqevktsv sserlrvrrs taeaariiyp peaqtiivtk gqslilecva
      301 sgippprvtw akdgssvsay nktrfllsnl lidttseeds gtysctadng vgeagaafif
      361 ynvqvfeppe vtmelsqqii pwgqsakftc evrgnpqpsv mwlrnavpls tshrlrlsrk
      421 alrlvsvgpe ddgiyqcmae nevgsaqamv qlrtarpgat ltpgrdahlg saqpptppsr
      481 dstlklpldk vglprpgatp laasqqcaan gelvspaeap iilssprtsk tdsydlvwrp
      541 rpdsrapily yvvkhrkvsl frpapifplr rstgglvasl hvftpreqqv tnasdnwavr
      601 dipasqhrlt ltrldpgsly evemaahnca gegqtamvtf rtgrrpkpei vaskeqqiqr
      661 ddpgtstqss nqsdnsrlsp peapdrptis masetsvyvt wiprgnggfp iqsfrveykk
      721 lkkqgdwvla tsdippsrls veipglekgi sykfrvraln ilgesepsaa srpyvvngyn
      781 trayerpvag pyitftdain ettimlkwmy vpasnnntpi hgfyiyyrpt dsdndsdykk
      841 dvvegdrywh sishlqpets ydikmqcfne ggesefsnvm icetkarksl glpgrlppst
      901 vspqqrppfs gghsglgtga mvarssdlpy livgvvlgsi vllivafipf clwrawskqk
      961 qtidmgfpga gllvsscqyt mvplrgvsap ranghpyang qpytsgahln gicppagvgy
     1021 astkprdyrp devaqsheet nallqtrvlq ngnaqqdyqp srlpnsrted ssflyslpdd
     1081 sthqllqpqd dcphlqehfg glhhpvmssk vgvptldarr dplfhqgtpc clglvpveev
     1141 erldccqsrg dlhpqnpvit slgqdlprhl nssppplrsl etrspts
//
LOCUS       XP_053931506            1158 aa            linear   VRT 09-MAR-2023
DEFINITION  brother of CDO isoform X4 [Cuculus canorus].
ACCESSION   XP_053931506
VERSION     XP_053931506.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075531.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1158
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1158
                     /product="brother of CDO isoform X4"
                     /calculated_mol_wt=126716
     Region          91..154
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          99..103
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          111..115
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          135..139
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          149..154
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          183..250
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          192..196
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409358"
     Region          206..210
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409358"
     Region          229..233
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409358"
     Region          243..248
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409358"
     Region          285..354
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          294..298
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          307..311
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          322..332
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          342..347
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          369..452
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          386..390
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:143205"
     Region          399..403
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:143205"
     Region          420..424
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:143205"
     Region          434..439
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:143205"
     Region          447..450
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:143205"
     Region          455..518
                     /region_name="ISET-FN3_linker"
                     /note="Unstructured linking region I-set and fnIII on
                     Brother of CDO; pfam16625"
                     /db_xref="CDD:435475"
     Region          <538..603
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          652..739
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(652,719,734)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(735..736,738..739)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          758..855
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(758,828,843)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(844..845,847..848)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1158
                     /gene="BOC"
                     /coded_by="XM_054075531.1:114..3590"
                     /db_xref="GeneID:104055790"
ORIGIN      
        1 mkrdlgcgrl tqpqtafrci ricyristas peaaygtlpw vslpqdtlhg mamthgkkrp
       61 mspipclilv atscfaklse slqvtvqpas ivqklggpvs lrcvvdpprv nltwrlngke
      121 lagsdkvlgi hiergklivm alnnhtvgry qciarvpegv iasvpavvtl anlkdfkfdg
      181 qhvievdegn taviacdlpe shpkaqvrys vkqewleasr dnylimpsgn lqivnasqed
      241 egtykcaayn pvtqevktsv sserlrvrrs taeaariiyp peaqtiivtk gqslilecva
      301 sgippprvtw akdgssvsay nktrfllsnl lidttseeds gtysctadng vgeagaafif
      361 ynvqvfeppe vtmelsqqii pwgqsakftc evrgnpqpsv mwlrnavpls tshrlrlsrk
      421 alrlvsvgpe ddgiyqcmae nevgsaqamv qlrtarpgat ltpgrdahlg saqpptppsr
      481 dstlklpldk vglprpgatp laasqqcaan gelvspaeap iilssprtsk tdsydlvwrp
      541 rpdsrapily yvvkhrkqvt nasdnwavrd ipasqhrltl trldpgslye vemaahncag
      601 egqtamvtfr tgkgrrpkpe ivaskeqqiq rddpgtstqs snqsdnsrls ppeapdrpti
      661 smasetsvyv twiprgnggf piqsfrveyk klkkqgdwvl atsdippsrl sveipglekg
      721 isykfrvral nilgesepsa asrpyvvngy ntrayerpva gpyitftdai nettimlkwm
      781 yvpasnnntp ihgfyiyyrp tdsdndsdyk kdvvegdryw hsishlqpet sydikmqcfn
      841 eggesefsnv micetkarks lglpgrlpps tvspqqrppf sgghsglgtg amvarssdlp
      901 ylivgvvlgs ivllivafip fclwrawskq kqtidmgfpg agllvsscqy tmvplrgvsa
      961 pranghpyan gqpytsgahl ngicppagvg yastkprdyr pdevaqshee tnallqtrvl
     1021 qngnaqqdyq psrlpnsrte dssflyslpd dsthqllqpq ddcphlqehf gglhhpvmss
     1081 kvgvptldar rdplfhqgtp cclglvpvee verldccqsr gdlhpqnpvi tslgqdlprh
     1141 lnssppplrs letrspts
//
LOCUS       XP_053931514            1157 aa            linear   VRT 09-MAR-2023
DEFINITION  brother of CDO isoform X5 [Cuculus canorus].
ACCESSION   XP_053931514
VERSION     XP_053931514.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075539.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1157
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1157
                     /product="brother of CDO isoform X5"
                     /calculated_mol_wt=126588
     Region          91..154
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          99..103
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          111..115
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          135..139
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          149..154
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          183..250
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          192..196
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409358"
     Region          206..210
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409358"
     Region          229..233
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409358"
     Region          243..248
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409358"
     Region          285..354
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          294..298
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          307..311
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          322..332
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          342..347
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          369..452
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          386..390
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:143205"
     Region          399..403
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:143205"
     Region          420..424
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:143205"
     Region          434..439
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:143205"
     Region          447..450
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:143205"
     Region          455..518
                     /region_name="ISET-FN3_linker"
                     /note="Unstructured linking region I-set and fnIII on
                     Brother of CDO; pfam16625"
                     /db_xref="CDD:435475"
     Region          <538..602
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          651..738
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(651,718,733)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(734..735,737..738)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          757..854
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(757,827,842)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(843..844,846..847)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1157
                     /gene="BOC"
                     /coded_by="XM_054075539.1:115..3588"
                     /db_xref="GeneID:104055790"
ORIGIN      
        1 mkrdlgcgrl tqpqtafrci ricyristas peaaygtlpw vslpqdtlhg mamthgkkrp
       61 mspipclilv atscfaklse slqvtvqpas ivqklggpvs lrcvvdpprv nltwrlngke
      121 lagsdkvlgi hiergklivm alnnhtvgry qciarvpegv iasvpavvtl anlkdfkfdg
      181 qhvievdegn taviacdlpe shpkaqvrys vkqewleasr dnylimpsgn lqivnasqed
      241 egtykcaayn pvtqevktsv sserlrvrrs taeaariiyp peaqtiivtk gqslilecva
      301 sgippprvtw akdgssvsay nktrfllsnl lidttseeds gtysctadng vgeagaafif
      361 ynvqvfeppe vtmelsqqii pwgqsakftc evrgnpqpsv mwlrnavpls tshrlrlsrk
      421 alrlvsvgpe ddgiyqcmae nevgsaqamv qlrtarpgat ltpgrdahlg saqpptppsr
      481 dstlklpldk vglprpgatp laasqqcaan gelvspaeap iilssprtsk tdsydlvwrp
      541 rpdsrapily yvvkhrkvtn asdnwavrdi pasqhrltlt rldpgslyev emaahncage
      601 gqtamvtfrt gkgrrpkpei vaskeqqiqr ddpgtstqss nqsdnsrlsp peapdrptis
      661 masetsvyvt wiprgnggfp iqsfrveykk lkkqgdwvla tsdippsrls veipglekgi
      721 sykfrvraln ilgesepsaa srpyvvngyn trayerpvag pyitftdain ettimlkwmy
      781 vpasnnntpi hgfyiyyrpt dsdndsdykk dvvegdrywh sishlqpets ydikmqcfne
      841 ggesefsnvm icetkarksl glpgrlppst vspqqrppfs gghsglgtga mvarssdlpy
      901 livgvvlgsi vllivafipf clwrawskqk qtidmgfpga gllvsscqyt mvplrgvsap
      961 ranghpyang qpytsgahln gicppagvgy astkprdyrp devaqsheet nallqtrvlq
     1021 ngnaqqdyqp srlpnsrted ssflyslpdd sthqllqpqd dcphlqehfg glhhpvmssk
     1081 vgvptldarr dplfhqgtpc clglvpveev erldccqsrg dlhpqnpvit slgqdlprhl
     1141 nssppplrsl etrspts
//
LOCUS       XP_009555263            1156 aa            linear   VRT 09-MAR-2023
DEFINITION  brother of CDO isoform X6 [Cuculus canorus].
ACCESSION   XP_009555263
VERSION     XP_009555263.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556968.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555263.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1156
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1156
                     /product="brother of CDO isoform X6"
                     /calculated_mol_wt=126531
     Region          91..154
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          99..103
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          111..115
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          135..139
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          149..154
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          183..250
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          192..196
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409358"
     Region          206..210
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409358"
     Region          229..233
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409358"
     Region          243..248
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409358"
     Region          285..354
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          294..298
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          307..311
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          322..332
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          342..347
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          369..452
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          386..390
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:143205"
     Region          399..403
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:143205"
     Region          420..424
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:143205"
     Region          434..439
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:143205"
     Region          447..450
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:143205"
     Region          455..518
                     /region_name="ISET-FN3_linker"
                     /note="Unstructured linking region I-set and fnIII on
                     Brother of CDO; pfam16625"
                     /db_xref="CDD:435475"
     Region          <538..603
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          650..737
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(650,717,732)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(733..734,736..737)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          756..853
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(756,826,841)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(842..843,845..846)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1156
                     /gene="BOC"
                     /coded_by="XM_009556968.2:108..3578"
                     /db_xref="GeneID:104055790"
ORIGIN      
        1 mkrdlgcgrl tqpqtafrci ricyristas peaaygtlpw vslpqdtlhg mamthgkkrp
       61 mspipclilv atscfaklse slqvtvqpas ivqklggpvs lrcvvdpprv nltwrlngke
      121 lagsdkvlgi hiergklivm alnnhtvgry qciarvpegv iasvpavvtl anlkdfkfdg
      181 qhvievdegn taviacdlpe shpkaqvrys vkqewleasr dnylimpsgn lqivnasqed
      241 egtykcaayn pvtqevktsv sserlrvrrs taeaariiyp peaqtiivtk gqslilecva
      301 sgippprvtw akdgssvsay nktrfllsnl lidttseeds gtysctadng vgeagaafif
      361 ynvqvfeppe vtmelsqqii pwgqsakftc evrgnpqpsv mwlrnavpls tshrlrlsrk
      421 alrlvsvgpe ddgiyqcmae nevgsaqamv qlrtarpgat ltpgrdahlg saqpptppsr
      481 dstlklpldk vglprpgatp laasqqcaan gelvspaeap iilssprtsk tdsydlvwrp
      541 rpdsrapily yvvkhrkqvt nasdnwavrd ipasqhrltl trldpgslye vemaahncag
      601 egqtamvtfr tgrrpkpeiv askeqqiqrd dpgtstqssn qsdnsrlspp eapdrptism
      661 asetsvyvtw iprgnggfpi qsfrveykkl kkqgdwvlat sdippsrlsv eipglekgis
      721 ykfrvralni lgesepsaas rpyvvngynt rayerpvagp yitftdaine ttimlkwmyv
      781 pasnnntpih gfyiyyrptd sdndsdykkd vvegdrywhs ishlqpetsy dikmqcfneg
      841 gesefsnvmi cetkarkslg lpgrlppstv spqqrppfsg ghsglgtgam varssdlpyl
      901 ivgvvlgsiv llivafipfc lwrawskqkq tidmgfpgag llvsscqytm vplrgvsapr
      961 anghpyangq pytsgahlng icppagvgya stkprdyrpd evaqsheetn allqtrvlqn
     1021 gnaqqdyqps rlpnsrteds sflyslpdds thqllqpqdd cphlqehfgg lhhpvmsskv
     1081 gvptldarrd plfhqgtpcc lglvpveeve rldccqsrgd lhpqnpvits lgqdlprhln
     1141 ssppplrsle trspts
//
LOCUS       XP_053931525            1155 aa            linear   VRT 09-MAR-2023
DEFINITION  brother of CDO isoform X7 [Cuculus canorus].
ACCESSION   XP_053931525
VERSION     XP_053931525.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075550.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1155
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1155
                     /product="brother of CDO isoform X7"
                     /calculated_mol_wt=126403
     Region          91..154
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          99..103
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          111..115
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          135..139
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          149..154
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          183..250
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          192..196
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409358"
     Region          206..210
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409358"
     Region          229..233
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409358"
     Region          243..248
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409358"
     Region          285..354
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          294..298
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          307..311
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          322..332
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          342..347
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          369..452
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          386..390
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:143205"
     Region          399..403
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:143205"
     Region          420..424
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:143205"
     Region          434..439
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:143205"
     Region          447..450
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:143205"
     Region          455..518
                     /region_name="ISET-FN3_linker"
                     /note="Unstructured linking region I-set and fnIII on
                     Brother of CDO; pfam16625"
                     /db_xref="CDD:435475"
     Region          <538..602
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          649..736
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(649,716,731)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(732..733,735..736)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          755..852
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(755,825,840)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(841..842,844..845)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1155
                     /gene="BOC"
                     /coded_by="XM_054075550.1:108..3575"
                     /db_xref="GeneID:104055790"
ORIGIN      
        1 mkrdlgcgrl tqpqtafrci ricyristas peaaygtlpw vslpqdtlhg mamthgkkrp
       61 mspipclilv atscfaklse slqvtvqpas ivqklggpvs lrcvvdpprv nltwrlngke
      121 lagsdkvlgi hiergklivm alnnhtvgry qciarvpegv iasvpavvtl anlkdfkfdg
      181 qhvievdegn taviacdlpe shpkaqvrys vkqewleasr dnylimpsgn lqivnasqed
      241 egtykcaayn pvtqevktsv sserlrvrrs taeaariiyp peaqtiivtk gqslilecva
      301 sgippprvtw akdgssvsay nktrfllsnl lidttseeds gtysctadng vgeagaafif
      361 ynvqvfeppe vtmelsqqii pwgqsakftc evrgnpqpsv mwlrnavpls tshrlrlsrk
      421 alrlvsvgpe ddgiyqcmae nevgsaqamv qlrtarpgat ltpgrdahlg saqpptppsr
      481 dstlklpldk vglprpgatp laasqqcaan gelvspaeap iilssprtsk tdsydlvwrp
      541 rpdsrapily yvvkhrkvtn asdnwavrdi pasqhrltlt rldpgslyev emaahncage
      601 gqtamvtfrt grrpkpeiva skeqqiqrdd pgtstqssnq sdnsrlsppe apdrptisma
      661 setsvyvtwi prgnggfpiq sfrveykklk kqgdwvlats dippsrlsve ipglekgisy
      721 kfrvralnil gesepsaasr pyvvngyntr ayerpvagpy itftdainet timlkwmyvp
      781 asnnntpihg fyiyyrptds dndsdykkdv vegdrywhsi shlqpetsyd ikmqcfnegg
      841 esefsnvmic etkarkslgl pgrlppstvs pqqrppfsgg hsglgtgamv arssdlpyli
      901 vgvvlgsivl livafipfcl wrawskqkqt idmgfpgagl lvsscqytmv plrgvsapra
      961 nghpyangqp ytsgahlngi cppagvgyas tkprdyrpde vaqsheetna llqtrvlqng
     1021 naqqdyqpsr lpnsrtedss flyslpddst hqllqpqddc phlqehfggl hhpvmsskvg
     1081 vptldarrdp lfhqgtpccl glvpveever ldccqsrgdl hpqnpvitsl gqdlprhlns
     1141 sppplrslet rspts
//
LOCUS       XP_053931535            1139 aa            linear   VRT 09-MAR-2023
DEFINITION  brother of CDO isoform X8 [Cuculus canorus].
ACCESSION   XP_053931535
VERSION     XP_053931535.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075560.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1139
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1139
                     /product="brother of CDO isoform X8"
                     /calculated_mol_wt=124586
     Region          41..104
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          49..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          61..65
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          85..89
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          99..104
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          133..200
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          142..146
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409358"
     Region          156..160
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409358"
     Region          179..183
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409358"
     Region          193..198
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409358"
     Region          235..304
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          244..248
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          257..261
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          272..282
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          292..297
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          319..402
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          336..340
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:143205"
     Region          349..353
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:143205"
     Region          370..374
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:143205"
     Region          384..389
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:143205"
     Region          397..400
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:143205"
     Region          405..468
                     /region_name="ISET-FN3_linker"
                     /note="Unstructured linking region I-set and fnIII on
                     Brother of CDO; pfam16625"
                     /db_xref="CDD:435475"
     Region          <488..584
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          633..720
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(633,700,715)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(716..717,719..720)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          739..836
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(739,809,824)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(825..826,828..829)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1139
                     /gene="BOC"
                     /coded_by="XM_054075560.1:507..3926"
                     /db_xref="GeneID:104055790"
ORIGIN      
        1 mamthgkkrp mspipclilv atscfaklse slqvtvqpas ivqklggpvs lrcvvdpprv
       61 nltwrlngke lagsdkvlgi hiergklivm alnnhtvgry qciarvpegv iasvpavvtl
      121 anlkdfkfdg qhvievdegn taviacdlpe shpkaqvrys vkqewleasr dnylimpsgn
      181 lqivnasqed egtykcaayn pvtqevktsv sserlrvrrs taeaariiyp peaqtiivtk
      241 gqslilecva sgippprvtw akdgssvsay nktrfllsnl lidttseeds gtysctadng
      301 vgeagaafif ynvqvfeppe vtmelsqqii pwgqsakftc evrgnpqpsv mwlrnavpls
      361 tshrlrlsrk alrlvsvgpe ddgiyqcmae nevgsaqamv qlrtarpgat ltpgrdahlg
      421 saqpptppsr dstlklpldk vglprpgatp laasqqcaan gelvspaeap iilssprtsk
      481 tdsydlvwrp rpdsrapily yvvkhrkvsl frpapifplr rstgglvasl hvftpreqqv
      541 tnasdnwavr dipasqhrlt ltrldpgsly evemaahnca gegqtamvtf rtgkgrrpkp
      601 eivaskeqqi qrddpgtstq ssnqsdnsrl sppeapdrpt ismasetsvy vtwiprgngg
      661 fpiqsfrvey kklkkqgdwv latsdippsr lsveipglek gisykfrvra lnilgeseps
      721 aasrpyvvng yntrayerpv agpyitftda inettimlkw myvpasnnnt pihgfyiyyr
      781 ptdsdndsdy kkdvvegdry whsishlqpe tsydikmqcf neggesefsn vmicetkark
      841 slglpgrlpp stvspqqrpp fsgghsglgt gamvarssdl pylivgvvlg sivllivafi
      901 pfclwrawsk qkqtidmgfp gagllvsscq ytmvplrgvs apranghpya ngqpytsgah
      961 lngicppagv gyastkprdy rpdevaqshe etnallqtrv lqngnaqqdy qpsrlpnsrt
     1021 edssflyslp ddsthqllqp qddcphlqeh fgglhhpvms skvgvptlda rrdplfhqgt
     1081 pcclglvpve everldccqs rgdlhpqnpv itslgqdlpr hlnssppplr sletrspts
//
LOCUS       XP_053931543            1139 aa            linear   VRT 09-MAR-2023
DEFINITION  brother of CDO isoform X8 [Cuculus canorus].
ACCESSION   XP_053931543
VERSION     XP_053931543.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075568.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1139
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1139
                     /product="brother of CDO isoform X8"
                     /calculated_mol_wt=124586
     Region          41..104
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          49..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          61..65
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          85..89
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          99..104
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          133..200
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          142..146
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409358"
     Region          156..160
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409358"
     Region          179..183
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409358"
     Region          193..198
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409358"
     Region          235..304
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          244..248
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          257..261
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          272..282
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          292..297
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          319..402
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          336..340
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:143205"
     Region          349..353
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:143205"
     Region          370..374
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:143205"
     Region          384..389
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:143205"
     Region          397..400
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:143205"
     Region          405..468
                     /region_name="ISET-FN3_linker"
                     /note="Unstructured linking region I-set and fnIII on
                     Brother of CDO; pfam16625"
                     /db_xref="CDD:435475"
     Region          <488..584
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          633..720
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(633,700,715)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(716..717,719..720)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          739..836
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(739,809,824)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(825..826,828..829)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1139
                     /gene="BOC"
                     /coded_by="XM_054075568.1:111..3530"
                     /db_xref="GeneID:104055790"
ORIGIN      
        1 mamthgkkrp mspipclilv atscfaklse slqvtvqpas ivqklggpvs lrcvvdpprv
       61 nltwrlngke lagsdkvlgi hiergklivm alnnhtvgry qciarvpegv iasvpavvtl
      121 anlkdfkfdg qhvievdegn taviacdlpe shpkaqvrys vkqewleasr dnylimpsgn
      181 lqivnasqed egtykcaayn pvtqevktsv sserlrvrrs taeaariiyp peaqtiivtk
      241 gqslilecva sgippprvtw akdgssvsay nktrfllsnl lidttseeds gtysctadng
      301 vgeagaafif ynvqvfeppe vtmelsqqii pwgqsakftc evrgnpqpsv mwlrnavpls
      361 tshrlrlsrk alrlvsvgpe ddgiyqcmae nevgsaqamv qlrtarpgat ltpgrdahlg
      421 saqpptppsr dstlklpldk vglprpgatp laasqqcaan gelvspaeap iilssprtsk
      481 tdsydlvwrp rpdsrapily yvvkhrkvsl frpapifplr rstgglvasl hvftpreqqv
      541 tnasdnwavr dipasqhrlt ltrldpgsly evemaahnca gegqtamvtf rtgkgrrpkp
      601 eivaskeqqi qrddpgtstq ssnqsdnsrl sppeapdrpt ismasetsvy vtwiprgngg
      661 fpiqsfrvey kklkkqgdwv latsdippsr lsveipglek gisykfrvra lnilgeseps
      721 aasrpyvvng yntrayerpv agpyitftda inettimlkw myvpasnnnt pihgfyiyyr
      781 ptdsdndsdy kkdvvegdry whsishlqpe tsydikmqcf neggesefsn vmicetkark
      841 slglpgrlpp stvspqqrpp fsgghsglgt gamvarssdl pylivgvvlg sivllivafi
      901 pfclwrawsk qkqtidmgfp gagllvsscq ytmvplrgvs apranghpya ngqpytsgah
      961 lngicppagv gyastkprdy rpdevaqshe etnallqtrv lqngnaqqdy qpsrlpnsrt
     1021 edssflyslp ddsthqllqp qddcphlqeh fgglhhpvms skvgvptlda rrdplfhqgt
     1081 pcclglvpve everldccqs rgdlhpqnpv itslgqdlpr hlnssppplr sletrspts
//
LOCUS       XP_053931549            1139 aa            linear   VRT 09-MAR-2023
DEFINITION  brother of CDO isoform X8 [Cuculus canorus].
ACCESSION   XP_053931549
VERSION     XP_053931549.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075574.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1139
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1139
                     /product="brother of CDO isoform X8"
                     /calculated_mol_wt=124586
     Region          41..104
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          49..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          61..65
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          85..89
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          99..104
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          133..200
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          142..146
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409358"
     Region          156..160
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409358"
     Region          179..183
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409358"
     Region          193..198
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409358"
     Region          235..304
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          244..248
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          257..261
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          272..282
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          292..297
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     Region          319..402
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          336..340
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:143205"
     Region          349..353
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:143205"
     Region          370..374
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:143205"
     Region          384..389
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:143205"
     Region          397..400
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:143205"
     Region          405..468
                     /region_name="ISET-FN3_linker"
                     /note="Unstructured linking region I-set and fnIII on
                     Brother of CDO; pfam16625"
                     /db_xref="CDD:435475"
     Region          <488..584
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          633..720
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(633,700,715)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(716..717,719..720)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          739..836
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(739,809,824)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(825..826,828..829)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1139
                     /gene="BOC"
                     /coded_by="XM_054075574.1:299..3718"
                     /db_xref="GeneID:104055790"
ORIGIN      
        1 mamthgkkrp mspipclilv atscfaklse slqvtvqpas ivqklggpvs lrcvvdpprv
       61 nltwrlngke lagsdkvlgi hiergklivm alnnhtvgry qciarvpegv iasvpavvtl
      121 anlkdfkfdg qhvievdegn taviacdlpe shpkaqvrys vkqewleasr dnylimpsgn
      181 lqivnasqed egtykcaayn pvtqevktsv sserlrvrrs taeaariiyp peaqtiivtk
      241 gqslilecva sgippprvtw akdgssvsay nktrfllsnl lidttseeds gtysctadng
      301 vgeagaafif ynvqvfeppe vtmelsqqii pwgqsakftc evrgnpqpsv mwlrnavpls
      361 tshrlrlsrk alrlvsvgpe ddgiyqcmae nevgsaqamv qlrtarpgat ltpgrdahlg
      421 saqpptppsr dstlklpldk vglprpgatp laasqqcaan gelvspaeap iilssprtsk
      481 tdsydlvwrp rpdsrapily yvvkhrkvsl frpapifplr rstgglvasl hvftpreqqv
      541 tnasdnwavr dipasqhrlt ltrldpgsly evemaahnca gegqtamvtf rtgkgrrpkp
      601 eivaskeqqi qrddpgtstq ssnqsdnsrl sppeapdrpt ismasetsvy vtwiprgngg
      661 fpiqsfrvey kklkkqgdwv latsdippsr lsveipglek gisykfrvra lnilgeseps
      721 aasrpyvvng yntrayerpv agpyitftda inettimlkw myvpasnnnt pihgfyiyyr
      781 ptdsdndsdy kkdvvegdry whsishlqpe tsydikmqcf neggesefsn vmicetkark
      841 slglpgrlpp stvspqqrpp fsgghsglgt gamvarssdl pylivgvvlg sivllivafi
      901 pfclwrawsk qkqtidmgfp gagllvsscq ytmvplrgvs apranghpya ngqpytsgah
      961 lngicppagv gyastkprdy rpdevaqshe etnallqtrv lqngnaqqdy qpsrlpnsrt
     1021 edssflyslp ddsthqllqp qddcphlqeh fgglhhpvms skvgvptlda rrdplfhqgt
     1081 pcclglvpve everldccqs rgdlhpqnpv itslgqdlpr hlnssppplr sletrspts
//
LOCUS       XP_053931555             471 aa            linear   VRT 09-MAR-2023
DEFINITION  platelet glycoprotein 4 [Cuculus canorus].
ACCESSION   XP_053931555
VERSION     XP_053931555.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075580.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..471
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..471
                     /product="platelet glycoprotein 4"
                     /calculated_mol_wt=52369
     Region          14..462
                     /region_name="CD36"
                     /note="CD36 family; pfam01130"
                     /db_xref="CDD:460076"
     CDS             1..471
                     /gene="CD36"
                     /coded_by="XM_054075580.1:269..1684"
                     /db_xref="GeneID:104066033"
ORIGIN      
        1 mgcnrdcgll tgavigavla ifggvlvpvg dnligkaikk eaviangtia fqnwlvpgss
       61 vyrqfwifnv qnpsevlesg arpvleqrgp ytyrvrylpk envtenpdgt isymlpnvar
      121 fepdmsigte ndtitclnla vvaapalytn nfiqlllntw iksskssmlq nrtvkeilwg
      181 ykdpflnkip fpldpvlgvf ypyngtfdgl ykvytgkedi kktaiiesyk nkrnlsyweg
      241 hcdmvngtdg asfppfvkkd qvlrffssdi crsiygvfqg kqnvkgisly rftvpreafa
      301 spaevadnyc fctdrvisqn ctlagvldis ackagrpvfi slphflhase silndvegls
      361 pnekehetfl dvepitgftl qfakrlqvnl lvkpapkiea lskvkkpyif pllwlnesav
      421 igdekaemfr skvtgrvqfl gvlqmalmia gsvmfvafmg sfficrtkkl k
//
LOCUS       XP_053931564             471 aa            linear   VRT 09-MAR-2023
DEFINITION  platelet glycoprotein 4 [Cuculus canorus].
ACCESSION   XP_053931564
VERSION     XP_053931564.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075589.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..471
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..471
                     /product="platelet glycoprotein 4"
                     /calculated_mol_wt=52369
     Region          14..462
                     /region_name="CD36"
                     /note="CD36 family; pfam01130"
                     /db_xref="CDD:460076"
     CDS             1..471
                     /gene="CD36"
                     /coded_by="XM_054075589.1:262..1677"
                     /db_xref="GeneID:104066033"
ORIGIN      
        1 mgcnrdcgll tgavigavla ifggvlvpvg dnligkaikk eaviangtia fqnwlvpgss
       61 vyrqfwifnv qnpsevlesg arpvleqrgp ytyrvrylpk envtenpdgt isymlpnvar
      121 fepdmsigte ndtitclnla vvaapalytn nfiqlllntw iksskssmlq nrtvkeilwg
      181 ykdpflnkip fpldpvlgvf ypyngtfdgl ykvytgkedi kktaiiesyk nkrnlsyweg
      241 hcdmvngtdg asfppfvkkd qvlrffssdi crsiygvfqg kqnvkgisly rftvpreafa
      301 spaevadnyc fctdrvisqn ctlagvldis ackagrpvfi slphflhase silndvegls
      361 pnekehetfl dvepitgftl qfakrlqvnl lvkpapkiea lskvkkpyif pllwlnesav
      421 igdekaemfr skvtgrvqfl gvlqmalmia gsvmfvafmg sfficrtkkl k
//
LOCUS       XP_053931574             471 aa            linear   VRT 09-MAR-2023
DEFINITION  platelet glycoprotein 4 [Cuculus canorus].
ACCESSION   XP_053931574
VERSION     XP_053931574.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075599.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..471
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..471
                     /product="platelet glycoprotein 4"
                     /calculated_mol_wt=52369
     Region          14..462
                     /region_name="CD36"
                     /note="CD36 family; pfam01130"
                     /db_xref="CDD:460076"
     CDS             1..471
                     /gene="CD36"
                     /coded_by="XM_054075599.1:268..1683"
                     /db_xref="GeneID:104066033"
ORIGIN      
        1 mgcnrdcgll tgavigavla ifggvlvpvg dnligkaikk eaviangtia fqnwlvpgss
       61 vyrqfwifnv qnpsevlesg arpvleqrgp ytyrvrylpk envtenpdgt isymlpnvar
      121 fepdmsigte ndtitclnla vvaapalytn nfiqlllntw iksskssmlq nrtvkeilwg
      181 ykdpflnkip fpldpvlgvf ypyngtfdgl ykvytgkedi kktaiiesyk nkrnlsyweg
      241 hcdmvngtdg asfppfvkkd qvlrffssdi crsiygvfqg kqnvkgisly rftvpreafa
      301 spaevadnyc fctdrvisqn ctlagvldis ackagrpvfi slphflhase silndvegls
      361 pnekehetfl dvepitgftl qfakrlqvnl lvkpapkiea lskvkkpyif pllwlnesav
      421 igdekaemfr skvtgrvqfl gvlqmalmia gsvmfvafmg sfficrtkkl k
//
LOCUS       XP_053931580             471 aa            linear   VRT 09-MAR-2023
DEFINITION  platelet glycoprotein 4 [Cuculus canorus].
ACCESSION   XP_053931580
VERSION     XP_053931580.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075605.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..471
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..471
                     /product="platelet glycoprotein 4"
                     /calculated_mol_wt=52369
     Region          14..462
                     /region_name="CD36"
                     /note="CD36 family; pfam01130"
                     /db_xref="CDD:460076"
     CDS             1..471
                     /gene="CD36"
                     /coded_by="XM_054075605.1:236..1651"
                     /db_xref="GeneID:104066033"
ORIGIN      
        1 mgcnrdcgll tgavigavla ifggvlvpvg dnligkaikk eaviangtia fqnwlvpgss
       61 vyrqfwifnv qnpsevlesg arpvleqrgp ytyrvrylpk envtenpdgt isymlpnvar
      121 fepdmsigte ndtitclnla vvaapalytn nfiqlllntw iksskssmlq nrtvkeilwg
      181 ykdpflnkip fpldpvlgvf ypyngtfdgl ykvytgkedi kktaiiesyk nkrnlsyweg
      241 hcdmvngtdg asfppfvkkd qvlrffssdi crsiygvfqg kqnvkgisly rftvpreafa
      301 spaevadnyc fctdrvisqn ctlagvldis ackagrpvfi slphflhase silndvegls
      361 pnekehetfl dvepitgftl qfakrlqvnl lvkpapkiea lskvkkpyif pllwlnesav
      421 igdekaemfr skvtgrvqfl gvlqmalmia gsvmfvafmg sfficrtkkl k
//
LOCUS       XP_053931589             471 aa            linear   VRT 09-MAR-2023
DEFINITION  platelet glycoprotein 4 [Cuculus canorus].
ACCESSION   XP_053931589
VERSION     XP_053931589.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075614.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..471
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..471
                     /product="platelet glycoprotein 4"
                     /calculated_mol_wt=52369
     Region          14..462
                     /region_name="CD36"
                     /note="CD36 family; pfam01130"
                     /db_xref="CDD:460076"
     CDS             1..471
                     /gene="CD36"
                     /coded_by="XM_054075614.1:250..1665"
                     /db_xref="GeneID:104066033"
ORIGIN      
        1 mgcnrdcgll tgavigavla ifggvlvpvg dnligkaikk eaviangtia fqnwlvpgss
       61 vyrqfwifnv qnpsevlesg arpvleqrgp ytyrvrylpk envtenpdgt isymlpnvar
      121 fepdmsigte ndtitclnla vvaapalytn nfiqlllntw iksskssmlq nrtvkeilwg
      181 ykdpflnkip fpldpvlgvf ypyngtfdgl ykvytgkedi kktaiiesyk nkrnlsyweg
      241 hcdmvngtdg asfppfvkkd qvlrffssdi crsiygvfqg kqnvkgisly rftvpreafa
      301 spaevadnyc fctdrvisqn ctlagvldis ackagrpvfi slphflhase silndvegls
      361 pnekehetfl dvepitgftl qfakrlqvnl lvkpapkiea lskvkkpyif pllwlnesav
      421 igdekaemfr skvtgrvqfl gvlqmalmia gsvmfvafmg sfficrtkkl k
//
LOCUS       XP_053931597             435 aa            linear   VRT 09-MAR-2023
DEFINITION  class E basic helix-loop-helix protein 41 [Cuculus canorus].
ACCESSION   XP_053931597
VERSION     XP_053931597.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075622.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..435
                     /product="class E basic helix-loop-helix protein 41"
                     /calculated_mol_wt=45820
     Region          31..122
                     /region_name="bHLH-O_DEC2"
                     /note="basic helix-loop-helix-orange (bHLH-O) domain found
                     in differentially expressed in chondrocytes protein 2
                     (DEC2) and similar proteins; cd19750"
                     /db_xref="CDD:381593"
     Site            order(49..51,54,56..57,61,84..85)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381593"
     Site            order(56..57,59..61,63..64,66..67,70..71,74,82,84..86,
                     89..90,92..93,95..97,99..100,103)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381593"
     Region          129..175
                     /region_name="ORANGE"
                     /note="Orange domain; smart00511"
                     /db_xref="CDD:128787"
     CDS             1..435
                     /gene="BHLHE41"
                     /coded_by="XM_054075622.1:174..1481"
                     /db_xref="GeneID:128853148"
ORIGIN      
        1 mdegisrlpe rqllehrdfi gldypslymc kpkrgvkrdd sketyklphr liekkrrdri
       61 neciaqlkdl lpehlklttl ghlekavvle ltlkhlkalt alteqqhqki valqngersm
      121 kspvqadlda fhsgfqtcak evlqylsrfe swtpreqrca qllghlhsvs sqflpgpqll
      181 spppgplgkg csssppappc apghkpegqa hcvpviqrth aepsaetdtd tdsgyggege
      241 arpergsaaa ggplpalaik qeppgdeapp apkrlkldrg gsplpgtqgl aarsaeaaal
      301 vrpdtallgs lmalgagagg apfgqpaaap fclpfyfisp saaaymqpfl dkgslekyly
      361 paapipllyp gipaqaaaaa aaaassfpcl ssvlgpaeka aaglppaphl phpfaaepge
      421 daeptaaeep gaesp
//
LOCUS       XP_053931608             622 aa            linear   VRT 09-MAR-2023
DEFINITION  palmitoyltransferase ZDHHC17 [Cuculus canorus].
ACCESSION   XP_053931608
VERSION     XP_053931608.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075633.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..622
                     /product="palmitoyltransferase ZDHHC17"
                     /calculated_mol_wt=71376
     Region          42..297
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(56..58,60..61,65,68,77,79,81,85..86,89..91,93..94,
                     98,101,110,112,114,119..120,123..125,127..128,132,135,144)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          79..110
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          112..144
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(146,148,152..153,156..158,160..161,165,168,177,179,
                     181,185..186,189..191,194..195,199,202,211,214,216,
                     220..221,224..226,228..229,233,236,245)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          146..177
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          179..211
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          214..245
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          428..558
                     /region_name="DHHC"
                     /note="DHHC palmitoyltransferase; pfam01529"
                     /db_xref="CDD:396215"
     CDS             1..622
                     /gene="ZDHHC17"
                     /coded_by="XM_054075633.1:62..1930"
                     /db_xref="GeneID:104061142"
ORIGIN      
        1 maapleeyek eagcvpilhp eeikpqshyn hgyseslgrk shiddystwd ivkatqygiy
       61 ercrelveag ydvrqpdken vtllhwaain nridlvkyyi skgaivdqlg gdlnstplhw
      121 atrqghlsmv vqlmkygadp slidgegcsc ihlaaqfght sivayliakg qdvdmmdqng
      181 mtplmwaayr thsvdptrll ltfnvsvnlg dkyhkntalh wavlagnttv isllleagan
      241 vdaqnikges pldlakqrkn vwminhlqea rqakgydsps flrklkadke frqkvmlgtp
      301 flviwlvgfi adldidswli kglmyggvwa mvqflsksff dhsmhsalpl giylatkfwm
      361 yvtwffwfwn dlsfffihlp flansvalfy nfgkswksdp giikateeqk kktivelaet
      421 gsldlsifcs tclirkpvrs khcgvcnrci akfdhhcpwv gncvgagnhr yfmgylffll
      481 fmicwmiygc vsywgfhcet syakdgfwty itqiatcspw mfwmflnsvf hfmwvavllm
      541 cqmyqisclg ittnermnar rykhfkvttt siespfnhgc irniidffef rccglfrpvi
      601 vdwtrqytie ydqtsgsgyq lv
//
LOCUS       XP_053931618             502 aa            linear   VRT 09-MAR-2023
DEFINITION  interferon alpha/beta receptor 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931618
VERSION     XP_053931618.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075643.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..502
                     /product="interferon alpha/beta receptor 2 isoform X1"
                     /calculated_mol_wt=56222
     Region          <31..103
                     /region_name="Tissue_fac"
                     /note="Tissue factor; pfam01108"
                     /db_xref="CDD:460067"
     Region          123..227
                     /region_name="Interfer-bind"
                     /note="Interferon-alpha/beta receptor, fibronectin type
                     III; pfam09294"
                     /db_xref="CDD:462746"
     CDS             1..502
                     /gene="IFNAR2"
                     /coded_by="XM_054075643.1:671..2179"
                     /db_xref="GeneID:104064760"
ORIGIN      
        1 mggpmhfyql vyisilskvc cslpgrflgg pphslqmksy nfqhvlswqa krdpavptyy
       61 rvlytdrrnw ktaeqcsnit qlscnltddf kdvqtqyfsl vqsmigtevf nssvlefepi
      121 tetilgppev nisscrncin vtiklpashl rihktlrsli diygeleydi tlktfdgehk
      181 rplektteet fstvieglyp nrnycvsvmv tasmnkqsip spwkcvtvns varqdynmvt
      241 vagavcfslv lagalkclha ggyilqnksl pgsliflgsl sfphwtlese diasveifyk
      301 evkkkvness vgvsdeddss dsdsdairnh dytrrdivsr vphssdvpnv fvqystngts
      361 ddsssqasen petdpgdfee hemdieedkd tssellnpfs evndnyssrr nsacftinlr
      421 tvllrtseen vdsstallfs qedaadwqcs rafeskpldd pgsaqkphcq nsshelqnss
      481 rssdesdssd sdmdlkteyl rr
//
LOCUS       XP_053931619             502 aa            linear   VRT 09-MAR-2023
DEFINITION  interferon alpha/beta receptor 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931619
VERSION     XP_053931619.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075644.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..502
                     /product="interferon alpha/beta receptor 2 isoform X1"
                     /calculated_mol_wt=56222
     Region          <31..103
                     /region_name="Tissue_fac"
                     /note="Tissue factor; pfam01108"
                     /db_xref="CDD:460067"
     Region          123..227
                     /region_name="Interfer-bind"
                     /note="Interferon-alpha/beta receptor, fibronectin type
                     III; pfam09294"
                     /db_xref="CDD:462746"
     CDS             1..502
                     /gene="IFNAR2"
                     /coded_by="XM_054075644.1:476..1984"
                     /db_xref="GeneID:104064760"
ORIGIN      
        1 mggpmhfyql vyisilskvc cslpgrflgg pphslqmksy nfqhvlswqa krdpavptyy
       61 rvlytdrrnw ktaeqcsnit qlscnltddf kdvqtqyfsl vqsmigtevf nssvlefepi
      121 tetilgppev nisscrncin vtiklpashl rihktlrsli diygeleydi tlktfdgehk
      181 rplektteet fstvieglyp nrnycvsvmv tasmnkqsip spwkcvtvns varqdynmvt
      241 vagavcfslv lagalkclha ggyilqnksl pgsliflgsl sfphwtlese diasveifyk
      301 evkkkvness vgvsdeddss dsdsdairnh dytrrdivsr vphssdvpnv fvqystngts
      361 ddsssqasen petdpgdfee hemdieedkd tssellnpfs evndnyssrr nsacftinlr
      421 tvllrtseen vdsstallfs qedaadwqcs rafeskpldd pgsaqkphcq nsshelqnss
      481 rssdesdssd sdmdlkteyl rr
//
LOCUS       XP_053931627             502 aa            linear   VRT 09-MAR-2023
DEFINITION  interferon alpha/beta receptor 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931627
VERSION     XP_053931627.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075652.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..502
                     /product="interferon alpha/beta receptor 2 isoform X1"
                     /calculated_mol_wt=56222
     Region          <31..103
                     /region_name="Tissue_fac"
                     /note="Tissue factor; pfam01108"
                     /db_xref="CDD:460067"
     Region          123..227
                     /region_name="Interfer-bind"
                     /note="Interferon-alpha/beta receptor, fibronectin type
                     III; pfam09294"
                     /db_xref="CDD:462746"
     CDS             1..502
                     /gene="IFNAR2"
                     /coded_by="XM_054075652.1:578..2086"
                     /db_xref="GeneID:104064760"
ORIGIN      
        1 mggpmhfyql vyisilskvc cslpgrflgg pphslqmksy nfqhvlswqa krdpavptyy
       61 rvlytdrrnw ktaeqcsnit qlscnltddf kdvqtqyfsl vqsmigtevf nssvlefepi
      121 tetilgppev nisscrncin vtiklpashl rihktlrsli diygeleydi tlktfdgehk
      181 rplektteet fstvieglyp nrnycvsvmv tasmnkqsip spwkcvtvns varqdynmvt
      241 vagavcfslv lagalkclha ggyilqnksl pgsliflgsl sfphwtlese diasveifyk
      301 evkkkvness vgvsdeddss dsdsdairnh dytrrdivsr vphssdvpnv fvqystngts
      361 ddsssqasen petdpgdfee hemdieedkd tssellnpfs evndnyssrr nsacftinlr
      421 tvllrtseen vdsstallfs qedaadwqcs rafeskpldd pgsaqkphcq nsshelqnss
      481 rssdesdssd sdmdlkteyl rr
//
LOCUS       XP_053931632             502 aa            linear   VRT 09-MAR-2023
DEFINITION  interferon alpha/beta receptor 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931632
VERSION     XP_053931632.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075657.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..502
                     /product="interferon alpha/beta receptor 2 isoform X1"
                     /calculated_mol_wt=56222
     Region          <31..103
                     /region_name="Tissue_fac"
                     /note="Tissue factor; pfam01108"
                     /db_xref="CDD:460067"
     Region          123..227
                     /region_name="Interfer-bind"
                     /note="Interferon-alpha/beta receptor, fibronectin type
                     III; pfam09294"
                     /db_xref="CDD:462746"
     CDS             1..502
                     /gene="IFNAR2"
                     /coded_by="XM_054075657.1:417..1925"
                     /db_xref="GeneID:104064760"
ORIGIN      
        1 mggpmhfyql vyisilskvc cslpgrflgg pphslqmksy nfqhvlswqa krdpavptyy
       61 rvlytdrrnw ktaeqcsnit qlscnltddf kdvqtqyfsl vqsmigtevf nssvlefepi
      121 tetilgppev nisscrncin vtiklpashl rihktlrsli diygeleydi tlktfdgehk
      181 rplektteet fstvieglyp nrnycvsvmv tasmnkqsip spwkcvtvns varqdynmvt
      241 vagavcfslv lagalkclha ggyilqnksl pgsliflgsl sfphwtlese diasveifyk
      301 evkkkvness vgvsdeddss dsdsdairnh dytrrdivsr vphssdvpnv fvqystngts
      361 ddsssqasen petdpgdfee hemdieedkd tssellnpfs evndnyssrr nsacftinlr
      421 tvllrtseen vdsstallfs qedaadwqcs rafeskpldd pgsaqkphcq nsshelqnss
      481 rssdesdssd sdmdlkteyl rr
//
LOCUS       XP_053931640             492 aa            linear   VRT 09-MAR-2023
DEFINITION  interferon alpha/beta receptor 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931640
VERSION     XP_053931640.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075665.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..492
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..492
                     /product="interferon alpha/beta receptor 2 isoform X2"
                     /calculated_mol_wt=55091
     Region          <21..93
                     /region_name="Tissue_fac"
                     /note="Tissue factor; pfam01108"
                     /db_xref="CDD:460067"
     Region          113..217
                     /region_name="Interfer-bind"
                     /note="Interferon-alpha/beta receptor, fibronectin type
                     III; pfam09294"
                     /db_xref="CDD:462746"
     CDS             1..492
                     /gene="IFNAR2"
                     /coded_by="XM_054075665.1:830..2308"
                     /db_xref="GeneID:104064760"
ORIGIN      
        1 myisilskvc cslpgrflgg pphslqmksy nfqhvlswqa krdpavptyy rvlytdrrnw
       61 ktaeqcsnit qlscnltddf kdvqtqyfsl vqsmigtevf nssvlefepi tetilgppev
      121 nisscrncin vtiklpashl rihktlrsli diygeleydi tlktfdgehk rplektteet
      181 fstvieglyp nrnycvsvmv tasmnkqsip spwkcvtvns varqdynmvt vagavcfslv
      241 lagalkclha ggyilqnksl pgsliflgsl sfphwtlese diasveifyk evkkkvness
      301 vgvsdeddss dsdsdairnh dytrrdivsr vphssdvpnv fvqystngts ddsssqasen
      361 petdpgdfee hemdieedkd tssellnpfs evndnyssrr nsacftinlr tvllrtseen
      421 vdsstallfs qedaadwqcs rafeskpldd pgsaqkphcq nsshelqnss rssdesdssd
      481 sdmdlkteyl rr
//
LOCUS       XP_053931650             488 aa            linear   VRT 09-MAR-2023
DEFINITION  interferon alpha/beta receptor 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931650
VERSION     XP_053931650.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075675.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..488
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..488
                     /product="interferon alpha/beta receptor 2 isoform X3"
                     /calculated_mol_wt=54715
     Region          <17..89
                     /region_name="Tissue_fac"
                     /note="Tissue factor; pfam01108"
                     /db_xref="CDD:460067"
     Region          109..213
                     /region_name="Interfer-bind"
                     /note="Interferon-alpha/beta receptor, fibronectin type
                     III; pfam09294"
                     /db_xref="CDD:462746"
     CDS             1..488
                     /gene="IFNAR2"
                     /coded_by="XM_054075675.1:671..2137"
                     /db_xref="GeneID:104064760"
ORIGIN      
        1 mggpmhfyql grflggpphs lqmksynfqh vlswqakrdp avptyyrvly tdrrnwktae
       61 qcsnitqlsc nltddfkdvq tqyfslvqsm igtevfnssv lefepiteti lgppevniss
      121 crncinvtik lpashlrihk tlrslidiyg eleyditlkt fdgehkrple ktteetfstv
      181 ieglypnrny cvsvmvtasm nkqsipspwk cvtvnsvarq dynmvtvaga vcfslvlaga
      241 lkclhaggyi lqnkslpgsl iflgslsfph wtlesedias veifykevkk kvnessvgvs
      301 deddssdsds dairnhdytr rdivsrvphs sdvpnvfvqy stngtsddss sqasenpetd
      361 pgdfeehemd ieedkdtsse llnpfsevnd nyssrrnsac ftinlrtvll rtseenvdss
      421 tallfsqeda adwqcsrafe skplddpgsa qkphcqnssh elqnssrssd esdssdsdmd
      481 lkteylrr
//
LOCUS       XP_053931660             404 aa            linear   VRT 09-MAR-2023
DEFINITION  interferon alpha/beta receptor 2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931660
VERSION     XP_053931660.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075685.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..404
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..404
                     /product="interferon alpha/beta receptor 2 isoform X4"
                     /calculated_mol_wt=44702
     Region          25..129
                     /region_name="Interfer-bind"
                     /note="Interferon-alpha/beta receptor, fibronectin type
                     III; pfam09294"
                     /db_xref="CDD:462746"
     CDS             1..404
                     /gene="IFNAR2"
                     /coded_by="XM_054075685.1:801..2015"
                     /db_xref="GeneID:104064760"
ORIGIN      
        1 mccpgkqkgi qlcqhtivcc tltaailgpp evnisscrnc invtiklpas hlrihktlrs
       61 lidiygeley ditlktfdge hkrplektte etfstviegl ypnrnycvsv mvtasmnkqs
      121 ipspwkcvtv nsvarqdynm vtvagavcfs lvlagalkcl haggyilqnk slpgsliflg
      181 slsfphwtle sediasveif ykevkkkvne ssvgvsdedd ssdsdsdair nhdytrrdiv
      241 srvphssdvp nvfvqystng tsddsssqas enpetdpgdf eehemdieed kdtssellnp
      301 fsevndnyss rrnsacftin lrtvllrtse envdsstall fsqedaadwq csrafeskpl
      361 ddpgsaqkph cqnsshelqn ssrssdesds sdsdmdlkte ylrr
//
LOCUS       XP_053931665             404 aa            linear   VRT 09-MAR-2023
DEFINITION  interferon alpha/beta receptor 2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931665
VERSION     XP_053931665.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075690.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..404
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..404
                     /product="interferon alpha/beta receptor 2 isoform X4"
                     /calculated_mol_wt=44702
     Region          25..129
                     /region_name="Interfer-bind"
                     /note="Interferon-alpha/beta receptor, fibronectin type
                     III; pfam09294"
                     /db_xref="CDD:462746"
     CDS             1..404
                     /gene="IFNAR2"
                     /coded_by="XM_054075690.1:930..2144"
                     /db_xref="GeneID:104064760"
ORIGIN      
        1 mccpgkqkgi qlcqhtivcc tltaailgpp evnisscrnc invtiklpas hlrihktlrs
       61 lidiygeley ditlktfdge hkrplektte etfstviegl ypnrnycvsv mvtasmnkqs
      121 ipspwkcvtv nsvarqdynm vtvagavcfs lvlagalkcl haggyilqnk slpgsliflg
      181 slsfphwtle sediasveif ykevkkkvne ssvgvsdedd ssdsdsdair nhdytrrdiv
      241 srvphssdvp nvfvqystng tsddsssqas enpetdpgdf eehemdieed kdtssellnp
      301 fsevndnyss rrnsacftin lrtvllrtse envdsstall fsqedaadwq csrafeskpl
      361 ddpgsaqkph cqnsshelqn ssrssdesds sdsdmdlkte ylrr
//
LOCUS       XP_053931673             404 aa            linear   VRT 09-MAR-2023
DEFINITION  interferon alpha/beta receptor 2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931673
VERSION     XP_053931673.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075698.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..404
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..404
                     /product="interferon alpha/beta receptor 2 isoform X4"
                     /calculated_mol_wt=44702
     Region          25..129
                     /region_name="Interfer-bind"
                     /note="Interferon-alpha/beta receptor, fibronectin type
                     III; pfam09294"
                     /db_xref="CDD:462746"
     CDS             1..404
                     /gene="IFNAR2"
                     /coded_by="XM_054075698.1:759..1973"
                     /db_xref="GeneID:104064760"
ORIGIN      
        1 mccpgkqkgi qlcqhtivcc tltaailgpp evnisscrnc invtiklpas hlrihktlrs
       61 lidiygeley ditlktfdge hkrplektte etfstviegl ypnrnycvsv mvtasmnkqs
      121 ipspwkcvtv nsvarqdynm vtvagavcfs lvlagalkcl haggyilqnk slpgsliflg
      181 slsfphwtle sediasveif ykevkkkvne ssvgvsdedd ssdsdsdair nhdytrrdiv
      241 srvphssdvp nvfvqystng tsddsssqas enpetdpgdf eehemdieed kdtssellnp
      301 fsevndnyss rrnsacftin lrtvllrtse envdsstall fsqedaadwq csrafeskpl
      361 ddpgsaqkph cqnsshelqn ssrssdesds sdsdmdlkte ylrr
//
LOCUS       XP_009562747             180 aa            linear   VRT 09-MAR-2023
DEFINITION  YY1-associated factor 2 [Cuculus canorus].
ACCESSION   XP_009562747
VERSION     XP_009562747.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009564452.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..180
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..180
                     /product="YY1-associated factor 2"
                     /calculated_mol_wt=19766
     Region          20..43
                     /region_name="zf-RanBP"
                     /note="Zn-finger in Ran binding protein and others;
                     pfam00641"
                     /db_xref="CDD:395516"
     Region          23..42
                     /region_name="RanBP2-type Zn finger"
                     /note="RanBP2-type Zn finger [structural motif]"
                     /db_xref="CDD:275376"
     Region          102..134
                     /region_name="YAF2_RYBP"
                     /note="Yaf2/RYBP C-terminal binding motif; pfam17219"
                     /db_xref="CDD:465386"
     CDS             1..180
                     /gene="YAF2"
                     /coded_by="XM_009564452.2:213..755"
                     /db_xref="GeneID:104062400"
ORIGIN      
        1 mgdkksptrp krqpkpssde gywdcsvctf rnsaeafkcm mcdvrkgtst rkprpvsqlv
       61 aqqvpqqfvp ptqskkekkd kvekekseke ttskknshkk trprlknvdr ssaqhlevtv
      121 gdltviitdf kektksppas saasadqhsq sgsssdnter gmsrsssprg easslngesh
//
LOCUS       XP_053931682            1101 aa            linear   VRT 09-MAR-2023
DEFINITION  DENN domain-containing protein 2A [Cuculus canorus].
ACCESSION   XP_053931682
VERSION     XP_053931682.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075707.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1101
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1101
                     /product="DENN domain-containing protein 2A"
                     /calculated_mol_wt=124476
     Region          655..747
                     /region_name="uDENN"
                     /note="Domain always found upstream of DENN domain, found
                     in a variety of signalling proteins; smart00800"
                     /db_xref="CDD:214824"
     Region          754..926
                     /region_name="DENN"
                     /note="DENN (AEX-3) domain; pfam02141"
                     /db_xref="CDD:460461"
     Region          988..1054
                     /region_name="dDENN"
                     /note="Domain always found downstream of DENN domain,
                     found in a variety of signalling proteins; smart00801"
                     /db_xref="CDD:129037"
     CDS             1..1101
                     /gene="DENND2A"
                     /coded_by="XM_054075707.1:159..3464"
                     /db_xref="GeneID:104058944"
ORIGIN      
        1 mmttskvagv ssksessvck seriklpdkn ntaavkeler plcgflserc sesasvtlgl
       61 tleaepvssv vknplgalen lmldprldff qqnmlspkmi isdpsmdlsi kensknirrq
      121 iggtqnirpp gkiglrnksf sikekisewe gkketqsapr reeeqgvkee hkvpcvtekm
      181 sgeplvtwkg etkrlvnwel eckgagkene rkavtlkgag qaaeqkwetq kdeevesspg
      241 kckevkcgkw evqkenlsvl sqvkkleqal kdgsgelqpq lpgtyyspqc lqekatqght
      301 vpeghesicg aelnkrllgl dseisepifg tleevrtshv kskvctvenv ytepgvpekk
      361 pfinplpkpr rtfkhdgeed wvpaarskrn lpplpsippp plpsspppsa vsrrlwsgkh
      421 knnadhrksy efedllqsss engrvdwyaq tklaltrtls eenvyedild ppskenpyed
      481 ietnsrclgk kcvmtfpasp issvpgtptk llskpiffrq nserrsfklp dirklsrdgt
      541 gspskispps tpsspddtff slgdpqngrr rrkipklvlk inaiyearrg kkrvkrlsqs
      601 tesnsgkvtd ensesdsdte eklkahsqrl vhvksrlkqt pryqtlerdl ieyqerqlfe
      661 yfvvvslhkk qagaayvpev tqqfplkler sfkfmreaed qlkaipqfcf pdakdwapih
      721 qfasetfsfv ltgedgsrrf gycrrllpsg kgkrlpevyc ivsrlgcfnl fskildevek
      781 rrgispalvq plmrsvmeap fpalgrtiti knflpgsgte vielrrplds rlehvdfesl
      841 ftslsvrhls rvfaslller rvifiadkls tlskcchatv allypftwqh tyipvlppsm
      901 idivcsptpf ligllssslp rlkelpveev lvvdlvnnrf lrqmededsi lprklqaale
      961 hileqrnela sdkeegpvng kqetnplnev vseafvrffv eivghyslfl tptereertl
     1021 qreafrksvs skslrrflev fmetqmfggf iqerelrkqg arglfevraq eyletlpsge
     1081 qsgvnrflkg lgskmkflhk k
//
LOCUS       XP_053931696             232 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853167 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931696
VERSION     XP_053931696.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075721.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..232
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..232
                     /product="uncharacterized protein LOC128853167 isoform X1"
                     /calculated_mol_wt=24644
     CDS             1..232
                     /gene="LOC128853167"
                     /coded_by="XM_054075721.1:70..768"
                     /db_xref="GeneID:128853167"
ORIGIN      
        1 mkvealmvtv lllvllspap apsqalgdrt atperqpgvg gpeedllppg kggnnlprqg
       61 skrscpmage welkeeapmg srstsramak sppcsseqdp askpprllpq plrsrsprls
      121 hhlkgygkfn gdthschsiq srpcqkpsdc ggclglytck lptskcvlka vsrqrgklqa
      181 pqllawrtpd tatskhslsa tplqtqirpa lcralscaln tpakgscmsc qh
//
LOCUS       XP_053931700             196 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853167 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931700
VERSION     XP_053931700.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075725.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..196
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..196
                     /product="uncharacterized protein LOC128853167 isoform X2"
                     /calculated_mol_wt=20869
     CDS             1..196
                     /gene="LOC128853167"
                     /coded_by="XM_054075725.1:70..660"
                     /db_xref="GeneID:128853167"
ORIGIN      
        1 mkvealmvtv lllvllspap apsqalgdrt atperqpgvg gpeedllppg kggnnlprqg
       61 skrscpmage welkeeapmg srstsramak sppcsseqdp askpprllpq plrsrsprls
      121 hhlkgygkfn gdthschsiq srpcqkpsdc ggclglytck lptskcvlka vsrqrgrllq
      181 tiqspvgpkv llipeq
//
LOCUS       XP_053931706             180 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853167 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931706
VERSION     XP_053931706.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075731.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..180
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..180
                     /product="uncharacterized protein LOC128853167 isoform X3"
                     /calculated_mol_wt=19275
     CDS             1..180
                     /gene="LOC128853167"
                     /coded_by="XM_054075731.1:70..612"
                     /db_xref="GeneID:128853167"
ORIGIN      
        1 mkvealmvtv lllvllspap apsqalgdrt atperqpgvg gpeedllppg kggnnlprqg
       61 skrscpmage welkeeapmg srstsramak sppcsseqdp askpprllpq plrsrsprls
      121 hhlkgygkfn gdthschsiq srpcqkpsdc ggclglytck lptskcvlka vsrqrayfhr
//
LOCUS       XP_053931718             537 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 384 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931718
VERSION     XP_053931718.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075743.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..537
                     /product="zinc finger protein 384 isoform X1"
                     /calculated_mol_wt=58785
     Region          <199..410
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          232..252
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          260..280
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          288..308
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          321..341
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(326,328,330,332..333,336..337,340,354,356,360..361,
                     364..365,368,384,386,388,390..391,394..395,398)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          349..369
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          377..399
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          407..427
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          437..457
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..537
                     /gene="ZNF384"
                     /coded_by="XM_054075743.1:1002..2615"
                     /db_xref="GeneID:104064372"
ORIGIN      
        1 msgsyraigr vacrvlvkme eshfnsspyf wpavptvsgq ientmfinkm keqllptekg
       61 cslapphypa lltvptsval ptgismdsdt kpeqltphsq apvtqnitvv pvqsaglmta
      121 gpglvitsps gslvttassa qtfpisapmi vsalppgsqa alqvvpdlsk kgtttlsesg
      181 gggggggvap kpprgrkkkr lqesglpems dpfvltnedd edqhkdgkty rcrmcsltfy
      241 sksemqihsk shtetkphkc phcsksfans sylaqhirih sgakpytcsy cqkafrqlsh
      301 lqqhtrihsk lhtaivkphk cphcsksfan tsylaqhlri hsgakpytcr ycqkafrqls
      361 hlqqhtriht gdrpykcahp gcekaftqls nlqshrrqhn kdkpfkchnc hraytdaasl
      421 evhlathtvk hakvytcsic sraytsetyl mkhmrkhnip dpqqqvvqaq aqasqqqqhf
      481 qpqgggaagg psgdtnqpnp ppqcsfdltp yktsehhkdi cltvstsaiq vehlsss
//
LOCUS       XP_053931726             537 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 384 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931726
VERSION     XP_053931726.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075751.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..537
                     /product="zinc finger protein 384 isoform X1"
                     /calculated_mol_wt=58785
     Region          <199..410
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          232..252
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          260..280
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          288..308
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          321..341
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(326,328,330,332..333,336..337,340,354,356,360..361,
                     364..365,368,384,386,388,390..391,394..395,398)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          349..369
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          377..399
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          407..427
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          437..457
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..537
                     /gene="ZNF384"
                     /coded_by="XM_054075751.1:515..2128"
                     /db_xref="GeneID:104064372"
ORIGIN      
        1 msgsyraigr vacrvlvkme eshfnsspyf wpavptvsgq ientmfinkm keqllptekg
       61 cslapphypa lltvptsval ptgismdsdt kpeqltphsq apvtqnitvv pvqsaglmta
      121 gpglvitsps gslvttassa qtfpisapmi vsalppgsqa alqvvpdlsk kgtttlsesg
      181 gggggggvap kpprgrkkkr lqesglpems dpfvltnedd edqhkdgkty rcrmcsltfy
      241 sksemqihsk shtetkphkc phcsksfans sylaqhirih sgakpytcsy cqkafrqlsh
      301 lqqhtrihsk lhtaivkphk cphcsksfan tsylaqhlri hsgakpytcr ycqkafrqls
      361 hlqqhtriht gdrpykcahp gcekaftqls nlqshrrqhn kdkpfkchnc hraytdaasl
      421 evhlathtvk hakvytcsic sraytsetyl mkhmrkhnip dpqqqvvqaq aqasqqqqhf
      481 qpqgggaagg psgdtnqpnp ppqcsfdltp yktsehhkdi cltvstsaiq vehlsss
//
LOCUS       XP_053931734             537 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 384 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931734
VERSION     XP_053931734.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075759.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..537
                     /product="zinc finger protein 384 isoform X1"
                     /calculated_mol_wt=58785
     Region          <199..410
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          232..252
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          260..280
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          288..308
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          321..341
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(326,328,330,332..333,336..337,340,354,356,360..361,
                     364..365,368,384,386,388,390..391,394..395,398)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          349..369
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          377..399
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          407..427
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          437..457
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..537
                     /gene="ZNF384"
                     /coded_by="XM_054075759.1:526..2139"
                     /db_xref="GeneID:104064372"
ORIGIN      
        1 msgsyraigr vacrvlvkme eshfnsspyf wpavptvsgq ientmfinkm keqllptekg
       61 cslapphypa lltvptsval ptgismdsdt kpeqltphsq apvtqnitvv pvqsaglmta
      121 gpglvitsps gslvttassa qtfpisapmi vsalppgsqa alqvvpdlsk kgtttlsesg
      181 gggggggvap kpprgrkkkr lqesglpems dpfvltnedd edqhkdgkty rcrmcsltfy
      241 sksemqihsk shtetkphkc phcsksfans sylaqhirih sgakpytcsy cqkafrqlsh
      301 lqqhtrihsk lhtaivkphk cphcsksfan tsylaqhlri hsgakpytcr ycqkafrqls
      361 hlqqhtriht gdrpykcahp gcekaftqls nlqshrrqhn kdkpfkchnc hraytdaasl
      421 evhlathtvk hakvytcsic sraytsetyl mkhmrkhnip dpqqqvvqaq aqasqqqqhf
      481 qpqgggaagg psgdtnqpnp ppqcsfdltp yktsehhkdi cltvstsaiq vehlsss
//
LOCUS       XP_053931737             537 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 384 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931737
VERSION     XP_053931737.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075762.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..537
                     /product="zinc finger protein 384 isoform X1"
                     /calculated_mol_wt=58785
     Region          <199..410
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          232..252
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          260..280
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          288..308
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          321..341
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(326,328,330,332..333,336..337,340,354,356,360..361,
                     364..365,368,384,386,388,390..391,394..395,398)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          349..369
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          377..399
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          407..427
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          437..457
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..537
                     /gene="ZNF384"
                     /coded_by="XM_054075762.1:452..2065"
                     /db_xref="GeneID:104064372"
ORIGIN      
        1 msgsyraigr vacrvlvkme eshfnsspyf wpavptvsgq ientmfinkm keqllptekg
       61 cslapphypa lltvptsval ptgismdsdt kpeqltphsq apvtqnitvv pvqsaglmta
      121 gpglvitsps gslvttassa qtfpisapmi vsalppgsqa alqvvpdlsk kgtttlsesg
      181 gggggggvap kpprgrkkkr lqesglpems dpfvltnedd edqhkdgkty rcrmcsltfy
      241 sksemqihsk shtetkphkc phcsksfans sylaqhirih sgakpytcsy cqkafrqlsh
      301 lqqhtrihsk lhtaivkphk cphcsksfan tsylaqhlri hsgakpytcr ycqkafrqls
      361 hlqqhtriht gdrpykcahp gcekaftqls nlqshrrqhn kdkpfkchnc hraytdaasl
      421 evhlathtvk hakvytcsic sraytsetyl mkhmrkhnip dpqqqvvqaq aqasqqqqhf
      481 qpqgggaagg psgdtnqpnp ppqcsfdltp yktsehhkdi cltvstsaiq vehlsss
//
LOCUS       XP_053931745             537 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 384 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931745
VERSION     XP_053931745.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075770.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..537
                     /product="zinc finger protein 384 isoform X1"
                     /calculated_mol_wt=58785
     Region          <199..410
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          232..252
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          260..280
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          288..308
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          321..341
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(326,328,330,332..333,336..337,340,354,356,360..361,
                     364..365,368,384,386,388,390..391,394..395,398)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          349..369
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          377..399
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          407..427
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          437..457
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..537
                     /gene="ZNF384"
                     /coded_by="XM_054075770.1:361..1974"
                     /db_xref="GeneID:104064372"
ORIGIN      
        1 msgsyraigr vacrvlvkme eshfnsspyf wpavptvsgq ientmfinkm keqllptekg
       61 cslapphypa lltvptsval ptgismdsdt kpeqltphsq apvtqnitvv pvqsaglmta
      121 gpglvitsps gslvttassa qtfpisapmi vsalppgsqa alqvvpdlsk kgtttlsesg
      181 gggggggvap kpprgrkkkr lqesglpems dpfvltnedd edqhkdgkty rcrmcsltfy
      241 sksemqihsk shtetkphkc phcsksfans sylaqhirih sgakpytcsy cqkafrqlsh
      301 lqqhtrihsk lhtaivkphk cphcsksfan tsylaqhlri hsgakpytcr ycqkafrqls
      361 hlqqhtriht gdrpykcahp gcekaftqls nlqshrrqhn kdkpfkchnc hraytdaasl
      421 evhlathtvk hakvytcsic sraytsetyl mkhmrkhnip dpqqqvvqaq aqasqqqqhf
      481 qpqgggaagg psgdtnqpnp ppqcsfdltp yktsehhkdi cltvstsaiq vehlsss
//
LOCUS       XP_053931750             523 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 384 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931750
VERSION     XP_053931750.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075775.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..523
                     /product="zinc finger protein 384 isoform X2"
                     /calculated_mol_wt=57338
     Region          <185..396
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          218..238
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          246..266
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          274..294
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          307..327
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(312,314,316,318..319,322..323,326,340,342,346..347,
                     350..351,354,370,372,374,376..377,380..381,384)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          335..355
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          363..385
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          393..413
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          423..443
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..523
                     /gene="ZNF384"
                     /coded_by="XM_054075775.1:804..2375"
                     /db_xref="GeneID:104064372"
ORIGIN      
        1 mltrmeeshf nsspyfwpav ptvsgqient mfinkmkeql lptekgcsla pphypalltv
       61 ptsvalptgi smdsdtkpeq ltphsqapvt qnitvvpvqs aglmtagpgl vitspsgslv
      121 ttassaqtfp isapmivsal ppgsqaalqv vpdlskkgtt tlsesggggg gggvapkppr
      181 grkkkrlqes glpemsdpfv ltneddedqh kdgktyrcrm csltfyskse mqihskshte
      241 tkphkcphcs ksfanssyla qhirihsgak pytcsycqka frqlshlqqh trihsklhta
      301 ivkphkcphc sksfantsyl aqhlrihsga kpytcrycqk afrqlshlqq htrihtgdrp
      361 ykcahpgcek aftqlsnlqs hrrqhnkdkp fkchnchray tdaaslevhl athtvkhakv
      421 ytcsicsray tsetylmkhm rkhnipdpqq qvvqaqaqas qqqqhfqpqg ggaaggpsgd
      481 tnqpnpppqc sfdltpykts ehhkdicltv stsaiqvehl sss
//
LOCUS       XP_053931760             523 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 384 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931760
VERSION     XP_053931760.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075785.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..523
                     /product="zinc finger protein 384 isoform X2"
                     /calculated_mol_wt=57338
     Region          <185..396
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          218..238
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          246..266
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          274..294
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          307..327
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(312,314,316,318..319,322..323,326,340,342,346..347,
                     350..351,354,370,372,374,376..377,380..381,384)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          335..355
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          363..385
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          393..413
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          423..443
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..523
                     /gene="ZNF384"
                     /coded_by="XM_054075785.1:317..1888"
                     /db_xref="GeneID:104064372"
ORIGIN      
        1 mltrmeeshf nsspyfwpav ptvsgqient mfinkmkeql lptekgcsla pphypalltv
       61 ptsvalptgi smdsdtkpeq ltphsqapvt qnitvvpvqs aglmtagpgl vitspsgslv
      121 ttassaqtfp isapmivsal ppgsqaalqv vpdlskkgtt tlsesggggg gggvapkppr
      181 grkkkrlqes glpemsdpfv ltneddedqh kdgktyrcrm csltfyskse mqihskshte
      241 tkphkcphcs ksfanssyla qhirihsgak pytcsycqka frqlshlqqh trihsklhta
      301 ivkphkcphc sksfantsyl aqhlrihsga kpytcrycqk afrqlshlqq htrihtgdrp
      361 ykcahpgcek aftqlsnlqs hrrqhnkdkp fkchnchray tdaaslevhl athtvkhakv
      421 ytcsicsray tsetylmkhm rkhnipdpqq qvvqaqaqas qqqqhfqpqg ggaaggpsgd
      481 tnqpnpppqc sfdltpykts ehhkdicltv stsaiqvehl sss
//
LOCUS       XP_053931766             519 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 384 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931766
VERSION     XP_053931766.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075791.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..519
                     /product="zinc finger protein 384 isoform X3"
                     /calculated_mol_wt=56837
     Region          <181..392
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          214..234
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          242..262
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          270..290
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          303..323
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(308,310,312,314..315,318..319,322,336,338,342..343,
                     346..347,350,366,368,370,372..373,376..377,380)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          331..351
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          359..381
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          389..409
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          419..439
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..519
                     /gene="ZNF384"
                     /coded_by="XM_054075791.1:1060..2619"
                     /db_xref="GeneID:104064372"
ORIGIN      
        1 meeshfnssp yfwpavptvs gqientmfin kmkeqllpte kgcslapphy palltvptsv
       61 alptgismds dtkpeqltph sqapvtqnit vvpvqsaglm tagpglvits psgslvttas
      121 saqtfpisap mivsalppgs qaalqvvpdl skkgtttlse sggggggggv apkpprgrkk
      181 krlqesglpe msdpfvltne ddedqhkdgk tyrcrmcslt fysksemqih skshtetkph
      241 kcphcsksfa nssylaqhir ihsgakpytc sycqkafrql shlqqhtrih sklhtaivkp
      301 hkcphcsksf antsylaqhl rihsgakpyt crycqkafrq lshlqqhtri htgdrpykca
      361 hpgcekaftq lsnlqshrrq hnkdkpfkch nchraytdaa slevhlatht vkhakvytcs
      421 icsraytset ylmkhmrkhn ipdpqqqvvq aqaqasqqqq hfqpqgggaa ggpsgdtnqp
      481 npppqcsfdl tpyktsehhk dicltvstsa iqvehlsss
//
LOCUS       XP_053931775             519 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 384 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931775
VERSION     XP_053931775.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075800.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..519
                     /product="zinc finger protein 384 isoform X3"
                     /calculated_mol_wt=56837
     Region          <181..392
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          214..234
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          242..262
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          270..290
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          303..323
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(308,310,312,314..315,318..319,322,336,338,342..343,
                     346..347,350,366,368,370,372..373,376..377,380)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          331..351
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          359..381
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          389..409
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          419..439
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..519
                     /gene="ZNF384"
                     /coded_by="XM_054075800.1:240..1799"
                     /db_xref="GeneID:104064372"
ORIGIN      
        1 meeshfnssp yfwpavptvs gqientmfin kmkeqllpte kgcslapphy palltvptsv
       61 alptgismds dtkpeqltph sqapvtqnit vvpvqsaglm tagpglvits psgslvttas
      121 saqtfpisap mivsalppgs qaalqvvpdl skkgtttlse sggggggggv apkpprgrkk
      181 krlqesglpe msdpfvltne ddedqhkdgk tyrcrmcslt fysksemqih skshtetkph
      241 kcphcsksfa nssylaqhir ihsgakpytc sycqkafrql shlqqhtrih sklhtaivkp
      301 hkcphcsksf antsylaqhl rihsgakpyt crycqkafrq lshlqqhtri htgdrpykca
      361 hpgcekaftq lsnlqshrrq hnkdkpfkch nchraytdaa slevhlatht vkhakvytcs
      421 icsraytset ylmkhmrkhn ipdpqqqvvq aqaqasqqqq hfqpqgggaa ggpsgdtnqp
      481 npppqcsfdl tpyktsehhk dicltvstsa iqvehlsss
//
LOCUS       XP_053931783             519 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 384 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931783
VERSION     XP_053931783.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075808.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..519
                     /product="zinc finger protein 384 isoform X3"
                     /calculated_mol_wt=56837
     Region          <181..392
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          214..234
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          242..262
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          270..290
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          303..323
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(308,310,312,314..315,318..319,322,336,338,342..343,
                     346..347,350,366,368,370,372..373,376..377,380)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          331..351
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          359..381
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          389..409
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          419..439
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..519
                     /gene="ZNF384"
                     /coded_by="XM_054075808.1:229..1788"
                     /db_xref="GeneID:104064372"
ORIGIN      
        1 meeshfnssp yfwpavptvs gqientmfin kmkeqllpte kgcslapphy palltvptsv
       61 alptgismds dtkpeqltph sqapvtqnit vvpvqsaglm tagpglvits psgslvttas
      121 saqtfpisap mivsalppgs qaalqvvpdl skkgtttlse sggggggggv apkpprgrkk
      181 krlqesglpe msdpfvltne ddedqhkdgk tyrcrmcslt fysksemqih skshtetkph
      241 kcphcsksfa nssylaqhir ihsgakpytc sycqkafrql shlqqhtrih sklhtaivkp
      301 hkcphcsksf antsylaqhl rihsgakpyt crycqkafrq lshlqqhtri htgdrpykca
      361 hpgcekaftq lsnlqshrrq hnkdkpfkch nchraytdaa slevhlatht vkhakvytcs
      421 icsraytset ylmkhmrkhn ipdpqqqvvq aqaqasqqqq hfqpqgggaa ggpsgdtnqp
      481 npppqcsfdl tpyktsehhk dicltvstsa iqvehlsss
//
LOCUS       XP_053931790             519 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 384 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931790
VERSION     XP_053931790.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075815.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..519
                     /product="zinc finger protein 384 isoform X3"
                     /calculated_mol_wt=56837
     Region          <181..392
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          214..234
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          242..262
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          270..290
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          303..323
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(308,310,312,314..315,318..319,322,336,338,342..343,
                     346..347,350,366,368,370,372..373,376..377,380)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          331..351
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          359..381
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          389..409
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          419..439
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..519
                     /gene="ZNF384"
                     /coded_by="XM_054075815.1:870..2429"
                     /db_xref="GeneID:104064372"
ORIGIN      
        1 meeshfnssp yfwpavptvs gqientmfin kmkeqllpte kgcslapphy palltvptsv
       61 alptgismds dtkpeqltph sqapvtqnit vvpvqsaglm tagpglvits psgslvttas
      121 saqtfpisap mivsalppgs qaalqvvpdl skkgtttlse sggggggggv apkpprgrkk
      181 krlqesglpe msdpfvltne ddedqhkdgk tyrcrmcslt fysksemqih skshtetkph
      241 kcphcsksfa nssylaqhir ihsgakpytc sycqkafrql shlqqhtrih sklhtaivkp
      301 hkcphcsksf antsylaqhl rihsgakpyt crycqkafrq lshlqqhtri htgdrpykca
      361 hpgcekaftq lsnlqshrrq hnkdkpfkch nchraytdaa slevhlatht vkhakvytcs
      421 icsraytset ylmkhmrkhn ipdpqqqvvq aqaqasqqqq hfqpqgggaa ggpsgdtnqp
      481 npppqcsfdl tpyktsehhk dicltvstsa iqvehlsss
//
LOCUS       XP_053931795             519 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 384 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931795
VERSION     XP_053931795.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075820.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..519
                     /product="zinc finger protein 384 isoform X3"
                     /calculated_mol_wt=56837
     Region          <181..392
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          214..234
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          242..262
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          270..290
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          303..323
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(308,310,312,314..315,318..319,322,336,338,342..343,
                     346..347,350,366,368,370,372..373,376..377,380)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          331..351
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          359..381
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          389..409
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          419..439
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..519
                     /gene="ZNF384"
                     /coded_by="XM_054075820.1:320..1879"
                     /db_xref="GeneID:104064372"
ORIGIN      
        1 meeshfnssp yfwpavptvs gqientmfin kmkeqllpte kgcslapphy palltvptsv
       61 alptgismds dtkpeqltph sqapvtqnit vvpvqsaglm tagpglvits psgslvttas
      121 saqtfpisap mivsalppgs qaalqvvpdl skkgtttlse sggggggggv apkpprgrkk
      181 krlqesglpe msdpfvltne ddedqhkdgk tyrcrmcslt fysksemqih skshtetkph
      241 kcphcsksfa nssylaqhir ihsgakpytc sycqkafrql shlqqhtrih sklhtaivkp
      301 hkcphcsksf antsylaqhl rihsgakpyt crycqkafrq lshlqqhtri htgdrpykca
      361 hpgcekaftq lsnlqshrrq hnkdkpfkch nchraytdaa slevhlatht vkhakvytcs
      421 icsraytset ylmkhmrkhn ipdpqqqvvq aqaqasqqqq hfqpqgggaa ggpsgdtnqp
      481 npppqcsfdl tpyktsehhk dicltvstsa iqvehlsss
//
LOCUS       XP_053931803             519 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 384 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931803
VERSION     XP_053931803.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075828.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..519
                     /product="zinc finger protein 384 isoform X3"
                     /calculated_mol_wt=56837
     Region          <181..392
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          214..234
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          242..262
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          270..290
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          303..323
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(308,310,312,314..315,318..319,322,336,338,342..343,
                     346..347,350,366,368,370,372..373,376..377,380)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          331..351
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          359..381
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          389..409
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          419..439
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..519
                     /gene="ZNF384"
                     /coded_by="XM_054075828.1:866..2425"
                     /db_xref="GeneID:104064372"
ORIGIN      
        1 meeshfnssp yfwpavptvs gqientmfin kmkeqllpte kgcslapphy palltvptsv
       61 alptgismds dtkpeqltph sqapvtqnit vvpvqsaglm tagpglvits psgslvttas
      121 saqtfpisap mivsalppgs qaalqvvpdl skkgtttlse sggggggggv apkpprgrkk
      181 krlqesglpe msdpfvltne ddedqhkdgk tyrcrmcslt fysksemqih skshtetkph
      241 kcphcsksfa nssylaqhir ihsgakpytc sycqkafrql shlqqhtrih sklhtaivkp
      301 hkcphcsksf antsylaqhl rihsgakpyt crycqkafrq lshlqqhtri htgdrpykca
      361 hpgcekaftq lsnlqshrrq hnkdkpfkch nchraytdaa slevhlatht vkhakvytcs
      421 icsraytset ylmkhmrkhn ipdpqqqvvq aqaqasqqqq hfqpqgggaa ggpsgdtnqp
      481 npppqcsfdl tpyktsehhk dicltvstsa iqvehlsss
//
LOCUS       XP_053931812             519 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 384 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931812
VERSION     XP_053931812.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075837.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..519
                     /product="zinc finger protein 384 isoform X3"
                     /calculated_mol_wt=56837
     Region          <181..392
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          214..234
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          242..262
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          270..290
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          303..323
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(308,310,312,314..315,318..319,322,336,338,342..343,
                     346..347,350,366,368,370,372..373,376..377,380)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          331..351
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          359..381
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          389..409
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          419..439
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..519
                     /gene="ZNF384"
                     /coded_by="XM_054075837.1:236..1795"
                     /db_xref="GeneID:104064372"
ORIGIN      
        1 meeshfnssp yfwpavptvs gqientmfin kmkeqllpte kgcslapphy palltvptsv
       61 alptgismds dtkpeqltph sqapvtqnit vvpvqsaglm tagpglvits psgslvttas
      121 saqtfpisap mivsalppgs qaalqvvpdl skkgtttlse sggggggggv apkpprgrkk
      181 krlqesglpe msdpfvltne ddedqhkdgk tyrcrmcslt fysksemqih skshtetkph
      241 kcphcsksfa nssylaqhir ihsgakpytc sycqkafrql shlqqhtrih sklhtaivkp
      301 hkcphcsksf antsylaqhl rihsgakpyt crycqkafrq lshlqqhtri htgdrpykca
      361 hpgcekaftq lsnlqshrrq hnkdkpfkch nchraytdaa slevhlatht vkhakvytcs
      421 icsraytset ylmkhmrkhn ipdpqqqvvq aqaqasqqqq hfqpqgggaa ggpsgdtnqp
      481 npppqcsfdl tpyktsehhk dicltvstsa iqvehlsss
//
LOCUS       XP_053931819             519 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 384 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931819
VERSION     XP_053931819.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075844.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..519
                     /product="zinc finger protein 384 isoform X3"
                     /calculated_mol_wt=56837
     Region          <181..392
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          214..234
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          242..262
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          270..290
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          303..323
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(308,310,312,314..315,318..319,322,336,338,342..343,
                     346..347,350,366,368,370,372..373,376..377,380)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          331..351
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          359..381
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          389..409
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          419..439
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..519
                     /gene="ZNF384"
                     /coded_by="XM_054075844.1:225..1784"
                     /db_xref="GeneID:104064372"
ORIGIN      
        1 meeshfnssp yfwpavptvs gqientmfin kmkeqllpte kgcslapphy palltvptsv
       61 alptgismds dtkpeqltph sqapvtqnit vvpvqsaglm tagpglvits psgslvttas
      121 saqtfpisap mivsalppgs qaalqvvpdl skkgtttlse sggggggggv apkpprgrkk
      181 krlqesglpe msdpfvltne ddedqhkdgk tyrcrmcslt fysksemqih skshtetkph
      241 kcphcsksfa nssylaqhir ihsgakpytc sycqkafrql shlqqhtrih sklhtaivkp
      301 hkcphcsksf antsylaqhl rihsgakpyt crycqkafrq lshlqqhtri htgdrpykca
      361 hpgcekaftq lsnlqshrrq hnkdkpfkch nchraytdaa slevhlatht vkhakvytcs
      421 icsraytset ylmkhmrkhn ipdpqqqvvq aqaqasqqqq hfqpqgggaa ggpsgdtnqp
      481 npppqcsfdl tpyktsehhk dicltvstsa iqvehlsss
//
LOCUS       XP_053931827             519 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 384 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931827
VERSION     XP_053931827.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075852.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..519
                     /product="zinc finger protein 384 isoform X3"
                     /calculated_mol_wt=56837
     Region          <181..392
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          214..234
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          242..262
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          270..290
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          303..323
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(308,310,312,314..315,318..319,322,336,338,342..343,
                     346..347,350,366,368,370,372..373,376..377,380)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          331..351
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          359..381
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          389..409
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          419..439
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..519
                     /gene="ZNF384"
                     /coded_by="XM_054075852.1:812..2371"
                     /db_xref="GeneID:104064372"
ORIGIN      
        1 meeshfnssp yfwpavptvs gqientmfin kmkeqllpte kgcslapphy palltvptsv
       61 alptgismds dtkpeqltph sqapvtqnit vvpvqsaglm tagpglvits psgslvttas
      121 saqtfpisap mivsalppgs qaalqvvpdl skkgtttlse sggggggggv apkpprgrkk
      181 krlqesglpe msdpfvltne ddedqhkdgk tyrcrmcslt fysksemqih skshtetkph
      241 kcphcsksfa nssylaqhir ihsgakpytc sycqkafrql shlqqhtrih sklhtaivkp
      301 hkcphcsksf antsylaqhl rihsgakpyt crycqkafrq lshlqqhtri htgdrpykca
      361 hpgcekaftq lsnlqshrrq hnkdkpfkch nchraytdaa slevhlatht vkhakvytcs
      421 icsraytset ylmkhmrkhn ipdpqqqvvq aqaqasqqqq hfqpqgggaa ggpsgdtnqp
      481 npppqcsfdl tpyktsehhk dicltvstsa iqvehlsss
//
LOCUS       XP_053931834             519 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 384 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931834
VERSION     XP_053931834.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075859.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..519
                     /product="zinc finger protein 384 isoform X3"
                     /calculated_mol_wt=56837
     Region          <181..392
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          214..234
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          242..262
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          270..290
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          303..323
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(308,310,312,314..315,318..319,322,336,338,342..343,
                     346..347,350,366,368,370,372..373,376..377,380)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          331..351
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          359..381
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          389..409
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          419..439
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..519
                     /gene="ZNF384"
                     /coded_by="XM_054075859.1:316..1875"
                     /db_xref="GeneID:104064372"
ORIGIN      
        1 meeshfnssp yfwpavptvs gqientmfin kmkeqllpte kgcslapphy palltvptsv
       61 alptgismds dtkpeqltph sqapvtqnit vvpvqsaglm tagpglvits psgslvttas
      121 saqtfpisap mivsalppgs qaalqvvpdl skkgtttlse sggggggggv apkpprgrkk
      181 krlqesglpe msdpfvltne ddedqhkdgk tyrcrmcslt fysksemqih skshtetkph
      241 kcphcsksfa nssylaqhir ihsgakpytc sycqkafrql shlqqhtrih sklhtaivkp
      301 hkcphcsksf antsylaqhl rihsgakpyt crycqkafrq lshlqqhtri htgdrpykca
      361 hpgcekaftq lsnlqshrrq hnkdkpfkch nchraytdaa slevhlatht vkhakvytcs
      421 icsraytset ylmkhmrkhn ipdpqqqvvq aqaqasqqqq hfqpqgggaa ggpsgdtnqp
      481 npppqcsfdl tpyktsehhk dicltvstsa iqvehlsss
//
LOCUS       XP_053931841             519 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 384 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931841
VERSION     XP_053931841.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075866.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..519
                     /product="zinc finger protein 384 isoform X3"
                     /calculated_mol_wt=56837
     Region          <181..392
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          214..234
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          242..262
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          270..290
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          303..323
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(308,310,312,314..315,318..319,322,336,338,342..343,
                     346..347,350,366,368,370,372..373,376..377,380)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          331..351
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          359..381
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          389..409
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          419..439
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..519
                     /gene="ZNF384"
                     /coded_by="XM_054075866.1:325..1884"
                     /db_xref="GeneID:104064372"
ORIGIN      
        1 meeshfnssp yfwpavptvs gqientmfin kmkeqllpte kgcslapphy palltvptsv
       61 alptgismds dtkpeqltph sqapvtqnit vvpvqsaglm tagpglvits psgslvttas
      121 saqtfpisap mivsalppgs qaalqvvpdl skkgtttlse sggggggggv apkpprgrkk
      181 krlqesglpe msdpfvltne ddedqhkdgk tyrcrmcslt fysksemqih skshtetkph
      241 kcphcsksfa nssylaqhir ihsgakpytc sycqkafrql shlqqhtrih sklhtaivkp
      301 hkcphcsksf antsylaqhl rihsgakpyt crycqkafrq lshlqqhtri htgdrpykca
      361 hpgcekaftq lsnlqshrrq hnkdkpfkch nchraytdaa slevhlatht vkhakvytcs
      421 icsraytset ylmkhmrkhn ipdpqqqvvq aqaqasqqqq hfqpqgggaa ggpsgdtnqp
      481 npppqcsfdl tpyktsehhk dicltvstsa iqvehlsss
//
LOCUS       XP_053931849             476 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 384 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931849
VERSION     XP_053931849.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075874.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..476
                     /product="zinc finger protein 384 isoform X4"
                     /calculated_mol_wt=51708
     Region          <199..398
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          232..252
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          260..280
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(265,267,269,271..272,275..276,279,293,295,299..300,
                     303..304,307,323,325,327,329..330,333..334,337)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          288..308
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          316..338
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          346..366
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          376..396
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..476
                     /gene="ZNF384"
                     /coded_by="XM_054075874.1:1004..2434"
                     /db_xref="GeneID:104064372"
ORIGIN      
        1 msgsyraigr vacrvlvkme eshfnsspyf wpavptvsgq ientmfinkm keqllptekg
       61 cslapphypa lltvptsval ptgismdsdt kpeqltphsq apvtqnitvv pvqsaglmta
      121 gpglvitsps gslvttassa qtfpisapmi vsalppgsqa alqvvpdlsk kgtttlsesg
      181 gggggggvap kpprgrkkkr lqesglpems dpfvltnedd edqhkdgkty rcrmcsltfy
      241 sksemqihsk shtetkphkc phcsksfans sylaqhirih sgakpytcsy cqkafrqlsh
      301 lqqhtrihtg drpykcahpg cekaftqlsn lqshrrqhnk dkpfkchnch raytdaasle
      361 vhlathtvkh akvytcsics raytsetylm khmrkhnipd pqqqvvqaqa qasqqqqhfq
      421 pqgggaaggp sgdtnqpnpp pqcsfdltpy ktsehhkdic ltvstsaiqv ehlsss
//
LOCUS       XP_053931863             370 aa            linear   VRT 09-MAR-2023
DEFINITION  lysophosphatidic acid receptor 5 [Cuculus canorus].
ACCESSION   XP_053931863
VERSION     XP_053931863.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075888.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..370
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..370
                     /product="lysophosphatidic acid receptor 5"
                     /calculated_mol_wt=42515
     Region          19..303
                     /region_name="7tmA_LPAR5"
                     /note="lysophosphatidic acid receptor 5, member of the
                     class A family of seven-transmembrane G protein-coupled
                     receptors; cd15154"
                     /db_xref="CDD:320282"
     Region          19..45
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320282"
     Region          52..77
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320282"
     Site            order(73,76..77,89..94,96..97,100,145,147..151,183,
                     186..188,190..192,194..195,242,245..246,248..249,252,
                     270..271,273..275,278,281..282)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320282"
     Region          89..119
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320282"
     Region          131..153
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320282"
     Region          183..212
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320282"
     Region          222..252
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320282"
     Region          271..296
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320282"
     CDS             1..370
                     /gene="LPAR5"
                     /coded_by="XM_054075888.1:698..1810"
                     /db_xref="GeneID:104064375"
ORIGIN      
        1 msapnvsqtc kdyrvnhqll lpgytlifit glllnvmalw ifirylrlks vvmiymlnla
       61 vsdltftlsl plriyyysnh hwlfgntlcq vsgsvfqinm ygsclflmci nldryvaivh
      121 plrwrhlrrp kvakilcliv wvvifmgsip tamvhkqnqc evqnktiylc fesfsdnmwq
      181 nnlfplvvla eilgfllpls cvtycstrif qelcqdsqtk tlrqqktvrl lvvnlvifii
      241 cfvpynttla vygmikaqvv kveqetqtsv rqvlittmll asmnctldpl iyyfstegfr
      301 ntfkklrrgq awdsdigmlk nqvvnnkstq vhtaskvkrf paenfirpne slpslptavf
      361 lngpiedsei
//
LOCUS       XP_009565003             370 aa            linear   VRT 09-MAR-2023
DEFINITION  lysophosphatidic acid receptor 5 [Cuculus canorus].
ACCESSION   XP_009565003
VERSION     XP_009565003.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566708.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..370
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..370
                     /product="lysophosphatidic acid receptor 5"
                     /calculated_mol_wt=42515
     Region          19..303
                     /region_name="7tmA_LPAR5"
                     /note="lysophosphatidic acid receptor 5, member of the
                     class A family of seven-transmembrane G protein-coupled
                     receptors; cd15154"
                     /db_xref="CDD:320282"
     Region          19..45
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320282"
     Region          52..77
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320282"
     Site            order(73,76..77,89..94,96..97,100,145,147..151,183,
                     186..188,190..192,194..195,242,245..246,248..249,252,
                     270..271,273..275,278,281..282)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320282"
     Region          89..119
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320282"
     Region          131..153
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320282"
     Region          183..212
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320282"
     Region          222..252
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320282"
     Region          271..296
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320282"
     CDS             1..370
                     /gene="LPAR5"
                     /coded_by="XM_009566708.2:443..1555"
                     /db_xref="GeneID:104064375"
ORIGIN      
        1 msapnvsqtc kdyrvnhqll lpgytlifit glllnvmalw ifirylrlks vvmiymlnla
       61 vsdltftlsl plriyyysnh hwlfgntlcq vsgsvfqinm ygsclflmci nldryvaivh
      121 plrwrhlrrp kvakilcliv wvvifmgsip tamvhkqnqc evqnktiylc fesfsdnmwq
      181 nnlfplvvla eilgfllpls cvtycstrif qelcqdsqtk tlrqqktvrl lvvnlvifii
      241 cfvpynttla vygmikaqvv kveqetqtsv rqvlittmll asmnctldpl iyyfstegfr
      301 ntfkklrrgq awdsdigmlk nqvvnnkstq vhtaskvkrf paenfirpne slpslptavf
      361 lngpiedsei
//
LOCUS       XP_053931878             370 aa            linear   VRT 09-MAR-2023
DEFINITION  lysophosphatidic acid receptor 5 [Cuculus canorus].
ACCESSION   XP_053931878
VERSION     XP_053931878.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075903.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..370
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..370
                     /product="lysophosphatidic acid receptor 5"
                     /calculated_mol_wt=42515
     Region          19..303
                     /region_name="7tmA_LPAR5"
                     /note="lysophosphatidic acid receptor 5, member of the
                     class A family of seven-transmembrane G protein-coupled
                     receptors; cd15154"
                     /db_xref="CDD:320282"
     Region          19..45
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320282"
     Region          52..77
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320282"
     Site            order(73,76..77,89..94,96..97,100,145,147..151,183,
                     186..188,190..192,194..195,242,245..246,248..249,252,
                     270..271,273..275,278,281..282)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320282"
     Region          89..119
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320282"
     Region          131..153
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320282"
     Region          183..212
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320282"
     Region          222..252
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320282"
     Region          271..296
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320282"
     CDS             1..370
                     /gene="LPAR5"
                     /coded_by="XM_054075903.1:837..1949"
                     /db_xref="GeneID:104064375"
ORIGIN      
        1 msapnvsqtc kdyrvnhqll lpgytlifit glllnvmalw ifirylrlks vvmiymlnla
       61 vsdltftlsl plriyyysnh hwlfgntlcq vsgsvfqinm ygsclflmci nldryvaivh
      121 plrwrhlrrp kvakilcliv wvvifmgsip tamvhkqnqc evqnktiylc fesfsdnmwq
      181 nnlfplvvla eilgfllpls cvtycstrif qelcqdsqtk tlrqqktvrl lvvnlvifii
      241 cfvpynttla vygmikaqvv kveqetqtsv rqvlittmll asmnctldpl iyyfstegfr
      301 ntfkklrrgq awdsdigmlk nqvvnnkstq vhtaskvkrf paenfirpne slpslptavf
      361 lngpiedsei
//
LOCUS       XP_053931885             370 aa            linear   VRT 09-MAR-2023
DEFINITION  lysophosphatidic acid receptor 5 [Cuculus canorus].
ACCESSION   XP_053931885
VERSION     XP_053931885.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075910.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..370
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..370
                     /product="lysophosphatidic acid receptor 5"
                     /calculated_mol_wt=42515
     Region          19..303
                     /region_name="7tmA_LPAR5"
                     /note="lysophosphatidic acid receptor 5, member of the
                     class A family of seven-transmembrane G protein-coupled
                     receptors; cd15154"
                     /db_xref="CDD:320282"
     Region          19..45
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320282"
     Region          52..77
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320282"
     Site            order(73,76..77,89..94,96..97,100,145,147..151,183,
                     186..188,190..192,194..195,242,245..246,248..249,252,
                     270..271,273..275,278,281..282)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320282"
     Region          89..119
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320282"
     Region          131..153
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320282"
     Region          183..212
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320282"
     Region          222..252
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320282"
     Region          271..296
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320282"
     CDS             1..370
                     /gene="LPAR5"
                     /coded_by="XM_054075910.1:1713..2825"
                     /db_xref="GeneID:104064375"
ORIGIN      
        1 msapnvsqtc kdyrvnhqll lpgytlifit glllnvmalw ifirylrlks vvmiymlnla
       61 vsdltftlsl plriyyysnh hwlfgntlcq vsgsvfqinm ygsclflmci nldryvaivh
      121 plrwrhlrrp kvakilcliv wvvifmgsip tamvhkqnqc evqnktiylc fesfsdnmwq
      181 nnlfplvvla eilgfllpls cvtycstrif qelcqdsqtk tlrqqktvrl lvvnlvifii
      241 cfvpynttla vygmikaqvv kveqetqtsv rqvlittmll asmnctldpl iyyfstegfr
      301 ntfkklrrgq awdsdigmlk nqvvnnkstq vhtaskvkrf paenfirpne slpslptavf
      361 lngpiedsei
//
LOCUS       XP_053931892             370 aa            linear   VRT 09-MAR-2023
DEFINITION  lysophosphatidic acid receptor 5 [Cuculus canorus].
ACCESSION   XP_053931892
VERSION     XP_053931892.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075917.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..370
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..370
                     /product="lysophosphatidic acid receptor 5"
                     /calculated_mol_wt=42515
     Region          19..303
                     /region_name="7tmA_LPAR5"
                     /note="lysophosphatidic acid receptor 5, member of the
                     class A family of seven-transmembrane G protein-coupled
                     receptors; cd15154"
                     /db_xref="CDD:320282"
     Region          19..45
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320282"
     Region          52..77
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320282"
     Site            order(73,76..77,89..94,96..97,100,145,147..151,183,
                     186..188,190..192,194..195,242,245..246,248..249,252,
                     270..271,273..275,278,281..282)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320282"
     Region          89..119
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320282"
     Region          131..153
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320282"
     Region          183..212
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320282"
     Region          222..252
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320282"
     Region          271..296
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320282"
     CDS             1..370
                     /gene="LPAR5"
                     /coded_by="XM_054075917.1:1870..2982"
                     /db_xref="GeneID:104064375"
ORIGIN      
        1 msapnvsqtc kdyrvnhqll lpgytlifit glllnvmalw ifirylrlks vvmiymlnla
       61 vsdltftlsl plriyyysnh hwlfgntlcq vsgsvfqinm ygsclflmci nldryvaivh
      121 plrwrhlrrp kvakilcliv wvvifmgsip tamvhkqnqc evqnktiylc fesfsdnmwq
      181 nnlfplvvla eilgfllpls cvtycstrif qelcqdsqtk tlrqqktvrl lvvnlvifii
      241 cfvpynttla vygmikaqvv kveqetqtsv rqvlittmll asmnctldpl iyyfstegfr
      301 ntfkklrrgq awdsdigmlk nqvvnnkstq vhtaskvkrf paenfirpne slpslptavf
      361 lngpiedsei
//
LOCUS       XP_053931904             249 aa            linear   VRT 09-MAR-2023
DEFINITION  inhibitor of growth protein 4 [Cuculus canorus].
ACCESSION   XP_053931904
VERSION     XP_053931904.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075929.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..249
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..249
                     /product="inhibitor of growth protein 4"
                     /calculated_mol_wt=28425
     Region          7..245
                     /region_name="TNG2"
                     /note="Chromatin remodeling protein, contains PhD zinc
                     finger [Chromatin structure and dynamics]; COG5034"
                     /db_xref="CDD:227367"
     Region          11..104
                     /region_name="ING_ING4"
                     /note="Inhibitor of growth (ING) domain of inhibitor of
                     growth protein 4 (ING4); cd16862"
                     /db_xref="CDD:341095"
     Site            order(14,17..19,22,25,28,32,39,42..43,46,49,58..59,61..62,
                     65..66,69,72..73,76,79..80,83,86,89..90,93..94,96..97,
                     100..101,104)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:341095"
     CDS             1..249
                     /gene="ING4"
                     /coded_by="XM_054075929.1:244..993"
                     /db_xref="GeneID:104064373"
ORIGIN      
        1 maagmylehy ldsienlpfe lqrnfqlmrd ldqrtedlks eidklateyi snartlssee
       61 klgllkqiqe aygkckefgd dkvqlamqty emvdkhirrl dtdlarfead lkekqiessd
      121 ydsssskgkk kgraqkekka ararskgkns deeapktaqk klklvrtste ygmpsvtfgn
      181 vhpsdvldmp vdpneptycl chqvsygemi gcdnpdcsie wfhfacvglt tkprgkwfcp
      241 rcsqerkkk
//
LOCUS       XP_053931917             142 aa            linear   VRT 09-MAR-2023
DEFINITION  acrosin-binding protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053931917
VERSION     XP_053931917.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075942.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..142
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..142
                     /product="acrosin-binding protein isoform X1"
                     /calculated_mol_wt=15744
     Region          25..>76
                     /region_name="PBP_sp32"
                     /note="Proacrosin binding protein sp32; pfam07222"
                     /db_xref="CDD:429354"
     CDS             1..142
                     /gene="ACRBP"
                     /coded_by="XM_054075942.1:118..546"
                     /db_xref="GeneID:104064401"
ORIGIN      
        1 mawgkerrva dlaqfcccig gpcsgqpmsd reymtffisl wpprkaevsc qlrqthgcfn
       61 pailqldqee nhnvvpkalk nnkavmvlcs avmketclas avikawkeme krifgfgdsv
      121 kmlmitfepa vcrapcsaeh na
//
LOCUS       XP_053931923              98 aa            linear   VRT 09-MAR-2023
DEFINITION  acrosin-binding protein isoform X2 [Cuculus canorus].
ACCESSION   XP_053931923
VERSION     XP_053931923.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075948.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..98
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..98
                     /product="acrosin-binding protein isoform X2"
                     /calculated_mol_wt=10828
     Region          25..>76
                     /region_name="PBP_sp32"
                     /note="Proacrosin binding protein sp32; pfam07222"
                     /db_xref="CDD:429354"
     CDS             1..98
                     /gene="ACRBP"
                     /coded_by="XM_054075948.1:118..414"
                     /db_xref="GeneID:104064401"
ORIGIN      
        1 mawgkerrva dlaqfcccig gpcsgqpmsd reymtffisl wpprkaevsc qlrqthgcfn
       61 pailqldqee nhnvvpkdll slgspscrvd fgepspdn
//
LOCUS       XP_009554891             550 aa            linear   VRT 09-MAR-2023
DEFINITION  intraflagellar transport protein 56 isoform X1 [Cuculus canorus].
ACCESSION   XP_009554891
VERSION     XP_009554891.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556596.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554891.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..550
                     /product="intraflagellar transport protein 56 isoform X1"
                     /calculated_mol_wt=62962
     Region          29..224
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          58..86
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          91..117
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(155..156,159..160,162,186,189..190,193..194,
                     196..197,220,223..224,227..228,231)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          155..179
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          184..214
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          219..247
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..550
                     /gene="IFT56"
                     /coded_by="XM_009556596.2:128..1780"
                     /db_xref="GeneID:104055473"
ORIGIN      
        1 mmlsrakpav agtpspgerq rkkgkkvpql eellaqrdft gaiallefqr qvgeqeedad
       61 lwigysafhl gdykraleey ealtkqpacn pdvwvnlact yfflgmytqa eqaalkapks
      121 hlqnrllfhl aqkfndekkl msshqnledi tedqlslasi hylrshyhea iaiykrilld
      181 nreylalnvy valcyykldy ydvsqevlav ylqefpdsti alnlkacncf rlfngkaaea
      241 efrnlmdnas ssfqfgkeli khnlvvfrgg egalqvlppl vdvipearln lviyylqqdd
      301 vqeaynlikd lepifpqeyi lkgvvnaalg qemgsrdhlk iaqqffqlvg esasecdtip
      361 grqcmasyff ltrqfdnvit yldsvknyfy nndifnfnya qakaavgnfi eaeevflliq
      421 sekikndfvy iswlarcyim nkkpqlawml yakmetsges vnllqliand cykmrqfyys
      481 akafailerl dsnseytegk igacvgvfqm iiagreakgs lqevlhllks tsnskveyiv
      541 rimkkwaken
//
LOCUS       XP_053931942             410 aa            linear   VRT 09-MAR-2023
DEFINITION  intraflagellar transport protein 56 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931942
VERSION     XP_053931942.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075967.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..410
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..410
                     /product="intraflagellar transport protein 56 isoform X2"
                     /calculated_mol_wt=47037
     Region          <14..84
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Site            order(15..16,19..20,22,46,49..50,53..54,56..57,80,83..84,
                     87..88,91)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          15..39
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          17..>205
                     /region_name="TPR"
                     /note="Tetratricopeptide (TPR) repeat [General function
                     prediction only]; COG0457"
                     /db_xref="CDD:440225"
     Region          44..74
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          79..107
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..410
                     /gene="IFT56"
                     /coded_by="XM_054075967.1:717..1949"
                     /db_xref="GeneID:104055473"
ORIGIN      
        1 msshqnledi tedqlslasi hylrshyhea iaiykrilld nreylalnvy valcyykldy
       61 ydvsqevlav ylqefpdsti alnlkacncf rlfngkaaea efrnlmdnas ssfqfgkeli
      121 khnlvvfrgg egalqvlppl vdvipearln lviyylqqdd vqeaynlikd lepifpqeyi
      181 lkgvvnaalg qemgsrdhlk iaqqffqlvg esasecdtip grqcmasyff ltrqfdnvit
      241 yldsvknyfy nndifnfnya qakaavgnfi eaeevflliq sekikndfvy iswlarcyim
      301 nkkpqlawml yakmetsges vnllqliand cykmrqfyys akafailerl dsnseytegk
      361 igacvgvfqm iiagreakgs lqevlhllks tsnskveyiv rimkkwaken
//
LOCUS       XP_009564739             680 aa            linear   VRT 09-MAR-2023
DEFINITION  GRB2-associated-binding protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_009564739
VERSION     XP_009564739.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566444.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564739.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..680
                     /product="GRB2-associated-binding protein 2 isoform X1"
                     /calculated_mol_wt=74982
     Region          3..125
                     /region_name="PH_Gab1_Gab2"
                     /note="Grb2-associated binding proteins 1 and 2 pleckstrin
                     homology (PH) domain; cd01266"
                     /db_xref="CDD:241297"
     CDS             1..680
                     /gene="GAB2"
                     /coded_by="XM_009566444.2:176..2218"
                     /db_xref="GeneID:104064146"
ORIGIN      
        1 msggevvcsg wlrksppekk lrryawkkrw fvlrsgrmsg dpdvleyykn dhskkplrvi
       61 nlnfceqvda gltfnkkelq dshifdikts drtfylvaet eddmnkwvrs icqicgfnqs
      121 eentdtlrsi asmnhaprss paelsgashh llrerkssap shssqptlft fdspashlqs
      181 tlsasapqdy lflhqcmsrk senarsasfs qatrsaffmr sdtavqklsq gnghcvngig
      241 gqlhgfyslp kpsrhnsefr dsaydlprsf asythpkssl tssetdneev ytyktpnntl
      301 ckefgelsmd sydipatsls vyqiprtftl dknhnalava asdspatppp rppkpgqtep
      361 rwgsppqqpq pseslglapm aatiprrntl pavensrlhr asscetydyp qhgggsavqs
      421 iesmndgyns ylqakaavar shstdsedny vpmnpssspl ihtekandna qnlyipmspg
      481 phhfdlvgls satlpmhkgg amvqchrrls eiqpppvnrn lkpdrkakps pldlrnntvi
      541 delpfkspvt kswsrpsqtf nagslqycrp vssqsitstd sgdseenyva mqnpisaspv
      601 psgtnspapk kssgsvdyla ldfqpsspgp hrkpstssaa sdekvdyvqv dkektqalqs
      661 tmqewtdvrq sseptkstkq
//
LOCUS       XP_053931968             548 aa            linear   VRT 09-MAR-2023
DEFINITION  GRB2-associated-binding protein 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931968
VERSION     XP_053931968.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075993.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..548
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..548
                     /product="GRB2-associated-binding protein 2 isoform X2"
                     /calculated_mol_wt=59569
     CDS             1..548
                     /gene="GAB2"
                     /coded_by="XM_054075993.1:165..1811"
                     /db_xref="GeneID:104064146"
ORIGIN      
        1 mnhaprsspa elsgashhll rerkssapsh ssqptlftfd spashlqstl sasapqdylf
       61 lhqcmsrkse narsasfsqa trsaffmrsd tavqklsqgn ghcvngiggq lhgfyslpkp
      121 srhnsefrds aydlprsfas ythpksslts setdneevyt yktpnntlck efgelsmdsy
      181 dipatslsvy qiprtftldk nhnalavaas dspatppprp pkpgqteprw gsppqqpqps
      241 eslglapmaa tiprrntlpa vensrlhras scetydypqh gggsavqsie smndgynsyl
      301 qakaavarsh stdsednyvp mnpsssplih tekandnaqn lyipmspgph hfdlvglssa
      361 tlpmhkggam vqchrrlsei qpppvnrnlk pdrkakpspl dlrnntvide lpfkspvtks
      421 wsrpsqtfna gslqycrpvs sqsitstdsg dseenyvamq npisaspvps gtnspapkks
      481 sgsvdylald fqpsspgphr kpstssaasd ekvdyvqvdk ektqalqstm qewtdvrqss
      541 eptkstkq
//
LOCUS       XP_053931974             601 aa            linear   VRT 09-MAR-2023
DEFINITION  nucleoporin p58/p45 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931974
VERSION     XP_053931974.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075999.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..601
                     /product="nucleoporin p58/p45 isoform X1"
                     /calculated_mol_wt=60268
     Region          37..601
                     /region_name="Nucleoporin_FG2"
                     /note="Nucleoporin FG repeated region; pfam15967"
                     /db_xref="CDD:435043"
     CDS             1..601
                     /gene="NUP58"
                     /coded_by="XM_054075999.1:179..1984"
                     /db_xref="GeneID:104064154"
ORIGIN      
        1 msagfsfgag tlgsaaaaaa agtggggggf sfgaaapsst gglnfgtlgs statattsap
       61 svgfgtglfg sksttgftlg gtstagtatt iatgltlgtp attsaattgf slgfnkpags
      121 atpfalpvts tssgglslss altstpaagt tgftlnlggt taptttastg lslggalagl
      181 ggslfqntst aatglgqnal sltlgttatp sttaneglgg idfssssdkk sdkagtrped
      241 skalkdenlp pvicqdvenl qkfvkeqkqv qeeisrmssk amlkvqedik alkqllsvva
      301 sglqrntlni dklkvetaqe lknaeialrt qktppglqhe ntapadyfri lveqfevqlq
      361 qyrqqieele nhlatqanns hitpqdlsma mqkiyqtfva laaqlqsihe nvkmlkdqyl
      421 gyrktflgda mdvfearrte akkwqsaprv ttgptpfsni pnaaavamaa tltqqqqpat
      481 gpqpslgvsf gtpfgsgigt glqssglgss slggfgsssa fgssapgass fgfgttskps
      541 gslsagfgss ttsgfnfsnp gitasagltf gvsnpasagf gtggqllqlk kppagnkrgk
      601 r
//
LOCUS       XP_053931983             600 aa            linear   VRT 09-MAR-2023
DEFINITION  nucleoporin p58/p45 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931983
VERSION     XP_053931983.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076008.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..600
                     /product="nucleoporin p58/p45 isoform X2"
                     /calculated_mol_wt=60197
     Region          37..600
                     /region_name="Nucleoporin_FG2"
                     /note="Nucleoporin FG repeated region; pfam15967"
                     /db_xref="CDD:435043"
     CDS             1..600
                     /gene="NUP58"
                     /coded_by="XM_054076008.1:181..1983"
                     /db_xref="GeneID:104064154"
ORIGIN      
        1 msagfsfgag tlgsaaaaaa agtggggggf sfgaaapsst gglnfgtlgs statattsap
       61 svgfgtglfg sksttgftlg gtstgtatti atgltlgtpa ttsaattgfs lgfnkpagsa
      121 tpfalpvtst ssgglslssa ltstpaagtt gftlnlggtt aptttastgl slggalaglg
      181 gslfqntsta atglgqnals ltlgttatps ttaneglggi dfssssdkks dkagtrpeds
      241 kalkdenlpp vicqdvenlq kfvkeqkqvq eeisrmsska mlkvqedika lkqllsvvas
      301 glqrntlnid klkvetaqel knaeialrtq ktppglqhen tapadyfril veqfevqlqq
      361 yrqqieelen hlatqannsh itpqdlsmam qkiyqtfval aaqlqsihen vkmlkdqylg
      421 yrktflgdam dvfearrtea kkwqsaprvt tgptpfsnip naaavamaat ltqqqqpatg
      481 pqpslgvsfg tpfgsgigtg lqssglgsss lggfgsssaf gssapgassf gfgttskpsg
      541 slsagfgsst tsgfnfsnpg itasagltfg vsnpasagfg tggqllqlkk ppagnkrgkr
//
LOCUS       XP_053931990             568 aa            linear   VRT 09-MAR-2023
DEFINITION  nucleoporin p58/p45 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931990
VERSION     XP_053931990.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076015.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..568
                     /product="nucleoporin p58/p45 isoform X3"
                     /calculated_mol_wt=57292
     Region          37..568
                     /region_name="Nucleoporin_FG2"
                     /note="Nucleoporin FG repeated region; pfam15967"
                     /db_xref="CDD:435043"
     CDS             1..568
                     /gene="NUP58"
                     /coded_by="XM_054076015.1:182..1888"
                     /db_xref="GeneID:104064154"
ORIGIN      
        1 msagfsfgag tlgsaaaaaa agtggggggf sfgaaapsst gglnfgtlgs statattsap
       61 svgfgtglfg sksttgftlg gtstagtatt iatgltlgtp attsaattgf slgfnkpags
      121 atpfalpvts tssgglslss altstpaagt tgftlnlggt taptttastg lslggalagl
      181 ggslfqntst aatglgqnal sltlgttatp sttaneglgg idfssssdkk sdkagtrped
      241 skalkdenlp pvicqdvenl qkfvkeqkqv qeeisrmssk amlkvqedik alkqllsvva
      301 sglqrntlni dklkvetaqe lknaeialrt qktppglqhe ntapadyfri lveqfevqlq
      361 qyrqqieele nhlatqanns hitpqdlsma mqkiyqtfva laaqlqsihe nvkmlkdqyl
      421 gyrktflgda mdvfearrte akkwqsaprv ttgptpfsni pnaaavamaa tltqqqqpat
      481 gfgsssafgs sapgassfgf gttskpsgsl sagfgsstts gfnfsnpgit asagltfgvs
      541 npasagfgtg gqllqlkkpp agnkrgkr
//
LOCUS       XP_053931999             567 aa            linear   VRT 09-MAR-2023
DEFINITION  nucleoporin p58/p45 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931999
VERSION     XP_053931999.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076024.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..567
                     /product="nucleoporin p58/p45 isoform X4"
                     /calculated_mol_wt=57221
     Region          37..567
                     /region_name="Nucleoporin_FG2"
                     /note="Nucleoporin FG repeated region; pfam15967"
                     /db_xref="CDD:435043"
     CDS             1..567
                     /gene="NUP58"
                     /coded_by="XM_054076024.1:184..1887"
                     /db_xref="GeneID:104064154"
ORIGIN      
        1 msagfsfgag tlgsaaaaaa agtggggggf sfgaaapsst gglnfgtlgs statattsap
       61 svgfgtglfg sksttgftlg gtstgtatti atgltlgtpa ttsaattgfs lgfnkpagsa
      121 tpfalpvtst ssgglslssa ltstpaagtt gftlnlggtt aptttastgl slggalaglg
      181 gslfqntsta atglgqnals ltlgttatps ttaneglggi dfssssdkks dkagtrpeds
      241 kalkdenlpp vicqdvenlq kfvkeqkqvq eeisrmsska mlkvqedika lkqllsvvas
      301 glqrntlnid klkvetaqel knaeialrtq ktppglqhen tapadyfril veqfevqlqq
      361 yrqqieelen hlatqannsh itpqdlsmam qkiyqtfval aaqlqsihen vkmlkdqylg
      421 yrktflgdam dvfearrtea kkwqsaprvt tgptpfsnip naaavamaat ltqqqqpatg
      481 fgsssafgss apgassfgfg ttskpsgsls agfgssttsg fnfsnpgita sagltfgvsn
      541 pasagfgtgg qllqlkkppa gnkrgkr
//
LOCUS       XP_009564808            1906 aa            linear   VRT 09-MAR-2023
DEFINITION  rho guanine nucleotide exchange factor 17 [Cuculus canorus].
ACCESSION   XP_009564808
VERSION     XP_009564808.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566513.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564808.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1906
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1906
                     /product="rho guanine nucleotide exchange factor 17"
                     /calculated_mol_wt=205406
     Region          <153..>276
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     Region          941..1126
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(947,951,1050,1077..1078,1081..1082,1084..1085,
                     1088..1089,1092..1093,1096,1122,1126)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          1155..1276
                     /region_name="PH_19"
                     /note="PH domain; pfam19057"
                     /db_xref="CDD:465965"
     Region          <1594..>1870
                     /region_name="WD40_2"
                     /note="WD40 repeated domain; pfam19056"
                     /db_xref="CDD:465964"
     CDS             1..1906
                     /gene="ARHGEF17"
                     /coded_by="XM_009566513.2:7..5727"
                     /db_xref="GeneID:104064211"
ORIGIN      
        1 maeggsergv aagrcllpas sppssssssf fffpgrkvsa siseqqpgra fgslapsvrq
       61 lslrfsepep pgpvdagaqp vppapppppp pplglsaepp rwpsvpamrk lfgescrqpa
      121 agsgaatgpg sgpgsgrgap ppppprsrvp hpalraphsa hnsarpqppa sspaafedpa
      181 gspggeglpg aprpraerrk egggwespag aegeagtprh pvvarvakvs ilpfgtrsgg
      241 ryssaetlke eeqlgiawps rgralqagyt iyrspsfgas dglawgqpav rirpkvpqgt
      301 akakadfege tlrqpgpeee rakhrkslsn pdiatetltl lsflksdlse lkvkkkgvri
      361 sldvgsdgcs gianpspsss saaqpanrwa agerptlkdl tatlrraksf tcseksgtrr
      421 lflqstmkqs sselllattd srdqvasdvg qqgdedalpm viqdqyiqea rqvfekisrm
      481 gsqqdysfta eqkdsggveg sevmastgtm dvtlrgqles trclkevele enlsrrksve
      541 elsghessvt degivtepep vgmpfqdlhk avdawtlpna gpaasdtetp vpvhpaaave
      601 dlpagksetp stpgslrrrr kfpsagangm eggsdcgtes yrslsdpmph rrcsvveevk
      661 nfsvdsnllg slsakagihq paafagsags agsdlslssd gprdyssliq tivsqpgama
      721 klidekgngk tikkkslsdp srrselpaga fegpgeaise lepsippsss epilsaqpaa
      781 pgtgrgygfd pkladvlspr iarrnskkrs nraahqenqp ppapavlaks rpatkhvrht
      841 septsfipit ipeplvpssh hshlpapaas hspgksfptl qppsledvtk rymlalnsgd
      901 aspspgdgpc spptappprl prcprppdeh gprtkpqvdm rkhvimtlld teqsyveslr
      961 tlmqgymkpl kqpensllcd pslvdeifdq ipellehheq fleqihdcvq nwhekqkvgd
     1021 llvqsfskdv lvniysayid nflnakdavr iakearpafi kfleqsmren kekqalsdlm
     1081 ikpvqripry ellvkdllkh tpedhpdhpf lidaqrnikq vaerinkgmk saeevernar
     1141 ivqeieshie gmedlqaplr rflrqemvve vkavggkkdr sfflftdllv cttlkrksgs
     1201 lrrssmslyt aasvidtask ykllwklple dvdivkgasq atnresiqks icrldedlst
     1261 lgqisklset lsfphqsldd vikdmmaavh rdlaekqsls fsmafppnkm elsttkadgt
     1321 esfifefpnp darlsfeqaf edakkklass kncldpeflk aipimktrsg mqfscaspth
     1381 gipesshevw vcnsdgyvgq vcllsirkep tveaciavcs arilciasvp glkrayrera
     1441 epvgspssep mpgqpedagp qpclhisisg sslelsepvd ggnrelmpfd sddtddessp
     1501 spsgtlqsqa shstisssfg neeiqtckea vaettsseee qepsfmpitg tygqnrhges
     1561 ptdgralrrs srgsftrgsl edllsldpea hqssmwlgte dgcihvyqss dnirnrknsm
     1621 kmqhaaavmc ilyldnqvfv slangelvay qreaghfwdp qnskslslgs pgspitkmva
     1681 vagklwcgcq nrviilnttt laqehtlqvg qdsgrsvtcm vstgtgvwva lqssaqvrly
     1741 hatsyeqlae aditppvhkm lagsdaiirq hkaaclrita llackdllwi gtsagvvltl
     1801 tisakaapvl vglsqghtgh vrfltaielp dsfdilfplp retgaeklse aekrdpsrlr
     1861 aptltlskpk mlvisggdgy edfrltssse tvgrddstnh lllwra
//
LOCUS       XP_053932018             464 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase 38-like [Cuculus canorus].
ACCESSION   XP_053932018
VERSION     XP_053932018.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076043.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..464
                     /product="serine/threonine-protein kinase 38-like"
                     /calculated_mol_wt=53774
     Region          12..86
                     /region_name="MobB_NDR_LATS-like"
                     /note="Mob-binding domain found in the NDR/LATS family
                     serine/threonine protein kinases; cl45907"
                     /db_xref="CDD:459252"
     Site            order(24..25,27..29,31..32,35..36,39,42,46,71,74..76,
                     78..79,82..83)
                     /site_type="other"
                     /note="Mob binding site [polypeptide binding]"
                     /db_xref="CDD:439267"
     Region          87..452
                     /region_name="STKc_NDR2"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Nuclear Dbf2-Related kinase 2; cd05627"
                     /db_xref="CDD:270776"
     Site            order(96..100,104,117,119,151,167..168,170,174,176,213,
                     215,217..218,220,230..231,234,283..288,315,321,324)
                     /site_type="active"
                     /db_xref="CDD:270776"
     Site            order(96..100,104,117,119,151,168..170,174,213,215,
                     217..218,220,230..231)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270776"
     Site            order(100,174,176,213,215,217,234,283..288,315,321,324)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270776"
     Site            order(230..242,279..288)
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270776"
     Site            438..443
                     /site_type="other"
                     /note="hydrophobic motif (HM)"
                     /db_xref="CDD:270776"
     CDS             1..464
                     /gene="STK38L"
                     /coded_by="XM_054076043.1:135..1529"
                     /db_xref="GeneID:104067184"
ORIGIN      
        1 mamtagttts fpmsnhtrer vtvakltlen fysnliiqhe eretrqkkle vameeeglad
       61 eekklrrsqh arketeflrl krtrlglddf eslkvigrga fgevrlvqkk dtghiyamki
      121 lrkadmleke qvahiraerd ilveadgawv vkmfysfqdk rnlylimefl pggdmmtllm
      181 kkdtlseeet qfyisetvla idaihqlgfi hrdikpdnll ldakghvkls dfglctglkk
      241 ahrtefyrnl thnppsdfsf qnmnskrkae twkknrrqla ystvgtpdyi apevfmqtgy
      301 nklcdwwslg vimyemligy ppfcsetpqe tyrkvmnwke tlvfppevpi sekakdlilr
      361 fctdsenrig sngveeiksh pffegvdwgh irerpaaipi eiksiddtsn fdefpesdil
      421 qpvpnttepd ykskdwvfln ytykrfeglt qrgsipsymk agkl
//
LOCUS       XP_053932031             524 aa            linear   VRT 09-MAR-2023
DEFINITION  non-homologous end joining factor IFFO1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053932031
VERSION     XP_053932031.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076056.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..524
                     /product="non-homologous end joining factor IFFO1 isoform
                     X1"
                     /calculated_mol_wt=58695
     Region          187..484
                     /region_name="Filament"
                     /note="Intermediate filament protein; pfam00038"
                     /db_xref="CDD:459643"
     CDS             1..524
                     /gene="IFFO1"
                     /coded_by="XM_054076056.1:88..1662"
                     /db_xref="GeneID:104064404"
ORIGIN      
        1 mnplfgpnlf llppeqqgpp vpaeppgpep papagpfpap paamalrndl gsnisvlktl
       61 nlrfrcflak vhelerrnrq lekqlqqale dgaggrgrgp prrdqavqtg fvapirtlgl
      121 glglglspsr algspsqpsp sfpaasrfap gtiwsfsqar rlgpgpettl vqgpgvswvh
      181 pdgvgvqidt itpeiralyn vlakvkrerd eykrrweeey tvrvqlqdqv telqeeaqea
      241 eacqeelamk veqlkaelvv fkglmsnnit eldtkiqeka mkvdmdicrr iditaklcdv
      301 aqqrncedmi kmfqslhlsp vkvpasvgrk rerkqvsded tslsesdasr kpeeeeedet
      361 tamsineemq rmlnqlreyd feddcdsltw eeteetlllw edfsgyaiaa aevqgeqdds
      421 lekvikdtes lfksrekeyq etidqielel atakndmnrh lheymemcsm krgldvqmet
      481 crrlitqsgd rkspaftpas nsesapnees eesdrdppsd asir
//
LOCUS       XP_053932044             520 aa            linear   VRT 09-MAR-2023
DEFINITION  non-homologous end joining factor IFFO1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053932044
VERSION     XP_053932044.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076069.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..520
                     /product="non-homologous end joining factor IFFO1 isoform
                     X2"
                     /calculated_mol_wt=58282
     Region          187..480
                     /region_name="Filament"
                     /note="Intermediate filament protein; pfam00038"
                     /db_xref="CDD:459643"
     CDS             1..520
                     /gene="IFFO1"
                     /coded_by="XM_054076069.1:91..1653"
                     /db_xref="GeneID:104064404"
ORIGIN      
        1 mnplfgpnlf llppeqqgpp vpaeppgpep papagpfpap paamalrndl gsnisvlktl
       61 nlrfrcflak vhelerrnrq lekqlqqale dgaggrgrgp prrdqavqtg fvapirtlgl
      121 glglglspsr algspsqpsp sfpaasrfap gtiwsfsqar rlgpgpettl vqgpgvswvh
      181 pdgvgvqidt itpeiralyn vlakvkrerd eykrrweeey tvrvqlqdqv telqeeaqea
      241 eacqeelamk veqlkaelvv fkglmsnnit eldtkiqeka mkvdmdicrr iditaklcdv
      301 aqqrncedmi kmfqslhlsp vkvpasvgrk rerkqvsded tslsesdasr kpeeeeedet
      361 tamsineemq rmlnqlreyd feddcdsltw eeteetlllw edfsgyaiaa aeqddslekv
      421 ikdteslfks rekeyqetid qielelatak ndmnrhlhey memcsmkrgl dvqmetcrrl
      481 itqsgdrksp aftpasnses apneeseesd rdppsdasir
//
LOCUS       XP_053932053             519 aa            linear   VRT 09-MAR-2023
DEFINITION  non-homologous end joining factor IFFO1 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053932053
VERSION     XP_053932053.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076078.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..519
                     /product="non-homologous end joining factor IFFO1 isoform
                     X3"
                     /calculated_mol_wt=58154
     Region          187..479
                     /region_name="Filament"
                     /note="Intermediate filament protein; pfam00038"
                     /db_xref="CDD:459643"
     CDS             1..519
                     /gene="IFFO1"
                     /coded_by="XM_054076078.1:91..1650"
                     /db_xref="GeneID:104064404"
ORIGIN      
        1 mnplfgpnlf llppeqqgpp vpaeppgpep papagpfpap paamalrndl gsnisvlktl
       61 nlrfrcflak vhelerrnrq lekqlqqale dgaggrgrgp prrdqavqtg fvapirtlgl
      121 glglglspsr algspsqpsp sfpaasrfap gtiwsfsqar rlgpgpettl vqgpgvswvh
      181 pdgvgvqidt itpeiralyn vlakvkrerd eykrrweeey tvrvqlqdqv telqeeaqea
      241 eacqeelamk veqlkaelvv fkglmsnnit eldtkiqeka mkvdmdicrr iditaklcdv
      301 aqqrncedmi kmfqslhlsp vkvpasvgrk rerkqvsded tslsesdasr kpeeeeedet
      361 tamsineemq rmlnqlreyd feddcdsltw eeteetlllw edfsgyaiaa aeddslekvi
      421 kdteslfksr ekeyqetidq ielelatakn dmnrhlheym emcsmkrgld vqmetcrrli
      481 tqsgdrkspa ftpasnsesa pneeseesdr dppsdasir
//
LOCUS       XP_009565031             516 aa            linear   VRT 09-MAR-2023
DEFINITION  non-homologous end joining factor IFFO1 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_009565031
VERSION     XP_009565031.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566736.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009565031.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..516
                     /product="non-homologous end joining factor IFFO1 isoform
                     X4"
                     /calculated_mol_wt=57833
     Region          187..476
                     /region_name="Filament"
                     /note="Intermediate filament protein; pfam00038"
                     /db_xref="CDD:459643"
     CDS             1..516
                     /gene="IFFO1"
                     /coded_by="XM_009566736.2:89..1639"
                     /db_xref="GeneID:104064404"
ORIGIN      
        1 mnplfgpnlf llppeqqgpp vpaeppgpep papagpfpap paamalrndl gsnisvlktl
       61 nlrfrcflak vhelerrnrq lekqlqqale dgaggrgrgp prrdqavqtg fvapirtlgl
      121 glglglspsr algspsqpsp sfpaasrfap gtiwsfsqar rlgpgpettl vqgpgvswvh
      181 pdgvgvqidt itpeiralyn vlakvkrerd eykrrweeey tvrvqlqdqv telqeeaqea
      241 eacqeelamk veqlkaelvv fkglmsnnit eldtkiqeka mkvdmdicrr iditaklcdv
      301 aqqrncedmi kmfqvpasvg rkrerkqvsd edtslsesda srkpeeeeed ettamsinee
      361 mqrmlnqlre ydfeddcdsl tweeteetll lwedfsgyai aaaevqgeqd dslekvikdt
      421 eslfksreke yqetidqiel elatakndmn rhlheymemc smkrgldvqm etcrrlitqs
      481 gdrkspaftp asnsesapne eseesdrdpp sdasir
//
LOCUS       XP_053932065             356 aa            linear   VRT 09-MAR-2023
DEFINITION  glyceraldehyde-3-phosphate dehydrogenase [Cuculus canorus].
ACCESSION   XP_053932065
VERSION     XP_053932065.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076090.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..356
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..356
                     /product="glyceraldehyde-3-phosphate dehydrogenase"
                     /calculated_mol_wt=38101
     Region          <25..353
                     /region_name="PLN02272"
                     /note="glyceraldehyde-3-phosphate dehydrogenase"
                     /db_xref="CDD:177912"
     CDS             1..356
                     /gene="GAPDH"
                     /coded_by="XM_054076090.1:25..1095"
                     /db_xref="GeneID:104064377"
ORIGIN      
        1 mctpgndage eaahprnipr eakmvkvgin gfgrigrlvt raavlsgkvq vvaindpfid
       61 lnymvymfky dsthghfrgt vkaengklvi ngnaitifqe rdpsnikwgd agaeyvvest
      121 gvfttmekag ahlkggakrv iisapsadap mfvmgvnhdk ydkslkivsn ascttnclap
      181 lakvihdnfv iveglmttvh aitatqktvd gpsgklwrdg rgaaqniipa stgaakavgk
      241 vipelngklt gmafrvptpn vsvvdltcrl ekpakyddik rvvkaaadgp mkgilayted
      301 qvvscdfngd shsstfdaga gialndhfvk lvswydneyg ysnrvvdlmv hmaske
//
LOCUS       XP_053932074             528 aa            linear   VRT 09-MAR-2023
DEFINITION  glucose-6-phosphate exchanger SLC37A1 [Cuculus canorus].
ACCESSION   XP_053932074
VERSION     XP_053932074.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076099.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..528
                     /product="glucose-6-phosphate exchanger SLC37A1"
                     /calculated_mol_wt=57428
     Region          21..515
                     /region_name="MFS_SLC37A1_2"
                     /note="Solute carrier family 37 members 1 and 2 of the
                     Major Facilitator Superfamily of transporters; cd17344"
                     /db_xref="CDD:340902"
     Site            order(35..36,39..40,43,112,167..168,170..172,175,195,
                     198..199,202,335,338..339,342..344,347,375,379,431..432,
                     436,440,464,467..468,471..472,475)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:340902"
     CDS             1..528
                     /gene="SLC37A1"
                     /coded_by="XM_054076099.1:456..2042"
                     /db_xref="GeneID:104059273"
ORIGIN      
        1 marlppgirf itsfsrdqwy rafifsltfl lyasfhlsrk pisivkgelh khcaasheve
       61 lssykedaaq iqpvkkpsni sqcgwepfdk nnykqllgal dysflcayav gmylsgiige
      121 rlpiryyltv gmlasglfta mfglgyfynv hnlwfyimaq ianglvqttg wpsvvtcign
      181 wfgkgrrgli mgiwnshtsv gnilgsliaa ywvstcwgls fvipgviiav mgivcflfli
      241 ehpkdiscsc tpssssktfm ngaarfrvqm ptlnaketsk pqdpemqhll idsencsvsl
      301 nsstmvageg rhgtsaisfl galqipgvie fslcllfakl vsytflfwlp lyitnvehld
      361 akragdlstl fdvggifggi laglisdrlk krastcgmml llaaptlymf savskmglea
      421 tvvmllisga lvngpyalit tavsadlgth kslkgnaral stvtaiidgt gsvgaalgpl
      481 laglispsgw nnvfymlmva dacallfllr liqkelrcna dhtlfkeh
//
LOCUS       XP_053932075             528 aa            linear   VRT 09-MAR-2023
DEFINITION  glucose-6-phosphate exchanger SLC37A1 [Cuculus canorus].
ACCESSION   XP_053932075
VERSION     XP_053932075.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076100.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..528
                     /product="glucose-6-phosphate exchanger SLC37A1"
                     /calculated_mol_wt=57428
     Region          21..515
                     /region_name="MFS_SLC37A1_2"
                     /note="Solute carrier family 37 members 1 and 2 of the
                     Major Facilitator Superfamily of transporters; cd17344"
                     /db_xref="CDD:340902"
     Site            order(35..36,39..40,43,112,167..168,170..172,175,195,
                     198..199,202,335,338..339,342..344,347,375,379,431..432,
                     436,440,464,467..468,471..472,475)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:340902"
     CDS             1..528
                     /gene="SLC37A1"
                     /coded_by="XM_054076100.1:473..2059"
                     /db_xref="GeneID:104059273"
ORIGIN      
        1 marlppgirf itsfsrdqwy rafifsltfl lyasfhlsrk pisivkgelh khcaasheve
       61 lssykedaaq iqpvkkpsni sqcgwepfdk nnykqllgal dysflcayav gmylsgiige
      121 rlpiryyltv gmlasglfta mfglgyfynv hnlwfyimaq ianglvqttg wpsvvtcign
      181 wfgkgrrgli mgiwnshtsv gnilgsliaa ywvstcwgls fvipgviiav mgivcflfli
      241 ehpkdiscsc tpssssktfm ngaarfrvqm ptlnaketsk pqdpemqhll idsencsvsl
      301 nsstmvageg rhgtsaisfl galqipgvie fslcllfakl vsytflfwlp lyitnvehld
      361 akragdlstl fdvggifggi laglisdrlk krastcgmml llaaptlymf savskmglea
      421 tvvmllisga lvngpyalit tavsadlgth kslkgnaral stvtaiidgt gsvgaalgpl
      481 laglispsgw nnvfymlmva dacallfllr liqkelrcna dhtlfkeh
//
LOCUS       XP_053932082             528 aa            linear   VRT 09-MAR-2023
DEFINITION  glucose-6-phosphate exchanger SLC37A1 [Cuculus canorus].
ACCESSION   XP_053932082
VERSION     XP_053932082.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076107.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..528
                     /product="glucose-6-phosphate exchanger SLC37A1"
                     /calculated_mol_wt=57428
     Region          21..515
                     /region_name="MFS_SLC37A1_2"
                     /note="Solute carrier family 37 members 1 and 2 of the
                     Major Facilitator Superfamily of transporters; cd17344"
                     /db_xref="CDD:340902"
     Site            order(35..36,39..40,43,112,167..168,170..172,175,195,
                     198..199,202,335,338..339,342..344,347,375,379,431..432,
                     436,440,464,467..468,471..472,475)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:340902"
     CDS             1..528
                     /gene="SLC37A1"
                     /coded_by="XM_054076107.1:304..1890"
                     /db_xref="GeneID:104059273"
ORIGIN      
        1 marlppgirf itsfsrdqwy rafifsltfl lyasfhlsrk pisivkgelh khcaasheve
       61 lssykedaaq iqpvkkpsni sqcgwepfdk nnykqllgal dysflcayav gmylsgiige
      121 rlpiryyltv gmlasglfta mfglgyfynv hnlwfyimaq ianglvqttg wpsvvtcign
      181 wfgkgrrgli mgiwnshtsv gnilgsliaa ywvstcwgls fvipgviiav mgivcflfli
      241 ehpkdiscsc tpssssktfm ngaarfrvqm ptlnaketsk pqdpemqhll idsencsvsl
      301 nsstmvageg rhgtsaisfl galqipgvie fslcllfakl vsytflfwlp lyitnvehld
      361 akragdlstl fdvggifggi laglisdrlk krastcgmml llaaptlymf savskmglea
      421 tvvmllisga lvngpyalit tavsadlgth kslkgnaral stvtaiidgt gsvgaalgpl
      481 laglispsgw nnvfymlmva dacallfllr liqkelrcna dhtlfkeh
//
LOCUS       XP_053932089             528 aa            linear   VRT 09-MAR-2023
DEFINITION  glucose-6-phosphate exchanger SLC37A1 [Cuculus canorus].
ACCESSION   XP_053932089
VERSION     XP_053932089.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076114.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..528
                     /product="glucose-6-phosphate exchanger SLC37A1"
                     /calculated_mol_wt=57428
     Region          21..515
                     /region_name="MFS_SLC37A1_2"
                     /note="Solute carrier family 37 members 1 and 2 of the
                     Major Facilitator Superfamily of transporters; cd17344"
                     /db_xref="CDD:340902"
     Site            order(35..36,39..40,43,112,167..168,170..172,175,195,
                     198..199,202,335,338..339,342..344,347,375,379,431..432,
                     436,440,464,467..468,471..472,475)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:340902"
     CDS             1..528
                     /gene="SLC37A1"
                     /coded_by="XM_054076114.1:242..1828"
                     /db_xref="GeneID:104059273"
ORIGIN      
        1 marlppgirf itsfsrdqwy rafifsltfl lyasfhlsrk pisivkgelh khcaasheve
       61 lssykedaaq iqpvkkpsni sqcgwepfdk nnykqllgal dysflcayav gmylsgiige
      121 rlpiryyltv gmlasglfta mfglgyfynv hnlwfyimaq ianglvqttg wpsvvtcign
      181 wfgkgrrgli mgiwnshtsv gnilgsliaa ywvstcwgls fvipgviiav mgivcflfli
      241 ehpkdiscsc tpssssktfm ngaarfrvqm ptlnaketsk pqdpemqhll idsencsvsl
      301 nsstmvageg rhgtsaisfl galqipgvie fslcllfakl vsytflfwlp lyitnvehld
      361 akragdlstl fdvggifggi laglisdrlk krastcgmml llaaptlymf savskmglea
      421 tvvmllisga lvngpyalit tavsadlgth kslkgnaral stvtaiidgt gsvgaalgpl
      481 laglispsgw nnvfymlmva dacallfllr liqkelrcna dhtlfkeh
//
LOCUS       XP_053932099             528 aa            linear   VRT 09-MAR-2023
DEFINITION  glucose-6-phosphate exchanger SLC37A1 [Cuculus canorus].
ACCESSION   XP_053932099
VERSION     XP_053932099.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076124.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..528
                     /product="glucose-6-phosphate exchanger SLC37A1"
                     /calculated_mol_wt=57428
     Region          21..515
                     /region_name="MFS_SLC37A1_2"
                     /note="Solute carrier family 37 members 1 and 2 of the
                     Major Facilitator Superfamily of transporters; cd17344"
                     /db_xref="CDD:340902"
     Site            order(35..36,39..40,43,112,167..168,170..172,175,195,
                     198..199,202,335,338..339,342..344,347,375,379,431..432,
                     436,440,464,467..468,471..472,475)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:340902"
     CDS             1..528
                     /gene="SLC37A1"
                     /coded_by="XM_054076124.1:259..1845"
                     /db_xref="GeneID:104059273"
ORIGIN      
        1 marlppgirf itsfsrdqwy rafifsltfl lyasfhlsrk pisivkgelh khcaasheve
       61 lssykedaaq iqpvkkpsni sqcgwepfdk nnykqllgal dysflcayav gmylsgiige
      121 rlpiryyltv gmlasglfta mfglgyfynv hnlwfyimaq ianglvqttg wpsvvtcign
      181 wfgkgrrgli mgiwnshtsv gnilgsliaa ywvstcwgls fvipgviiav mgivcflfli
      241 ehpkdiscsc tpssssktfm ngaarfrvqm ptlnaketsk pqdpemqhll idsencsvsl
      301 nsstmvageg rhgtsaisfl galqipgvie fslcllfakl vsytflfwlp lyitnvehld
      361 akragdlstl fdvggifggi laglisdrlk krastcgmml llaaptlymf savskmglea
      421 tvvmllisga lvngpyalit tavsadlgth kslkgnaral stvtaiidgt gsvgaalgpl
      481 laglispsgw nnvfymlmva dacallfllr liqkelrcna dhtlfkeh
//
LOCUS       XP_053932110             577 aa            linear   VRT 09-MAR-2023
DEFINITION  cystathionine beta-synthase-like protein isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053932110
VERSION     XP_053932110.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076135.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..577
                     /product="cystathionine beta-synthase-like protein isoform
                     X1"
                     /calculated_mol_wt=63633
     Region          91..567
                     /region_name="cysta_beta"
                     /note="cystathionine beta-synthase; TIGR01137"
                     /db_xref="CDD:273464"
     CDS             1..577
                     /gene="LOC104059241"
                     /coded_by="XM_054076135.1:217..1950"
                     /db_xref="GeneID:104059241"
ORIGIN      
        1 meklvseerv slskdemptl psqekpnmns cphasgkyfl pggmdnenck pnekerewir
       61 pdtpskctwk lgkpisasph rhttlpeplk ilpsilnkvg ntplvrinki gkqyglkcel
      121 lakceffnag gsvkdrislr mvedaekagi lkpgdtiiep tsgntgigla laaavkgyrc
      181 iivmpekmsm ekvdvlralg aeivrtptta rfdspeshvg vawrlkneip nahildqyrn
      241 asnplthydt taeeilqqcd gkidmlvata gtggtitgis rklkekcpgc kiigvdpegs
      301 ilatpeelnk tektmyeveg igydfvptvl drstvdqwyk sndedsfala rmlireegll
      361 cggssgsams vavkaakelk egqrcvvilp dsvrnymskf lsdkwmiqkg fmkeeylvkk
      421 pwwwnisvqe lslsapltvl psvtcaktve ilrekgfdqv pvvdesgvil gmvtlgnmls
      481 sllagkvqps devrkviykq fkqtdnqasg ggvinlkdnl gklshileid hfalvvheqi
      541 qyhsdgsssk rqmvfgivta idllnfvtar ererksn
//
LOCUS       XP_053932115             577 aa            linear   VRT 09-MAR-2023
DEFINITION  cystathionine beta-synthase-like protein isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053932115
VERSION     XP_053932115.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076140.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..577
                     /product="cystathionine beta-synthase-like protein isoform
                     X1"
                     /calculated_mol_wt=63633
     Region          91..567
                     /region_name="cysta_beta"
                     /note="cystathionine beta-synthase; TIGR01137"
                     /db_xref="CDD:273464"
     CDS             1..577
                     /gene="LOC104059241"
                     /coded_by="XM_054076140.1:168..1901"
                     /db_xref="GeneID:104059241"
ORIGIN      
        1 meklvseerv slskdemptl psqekpnmns cphasgkyfl pggmdnenck pnekerewir
       61 pdtpskctwk lgkpisasph rhttlpeplk ilpsilnkvg ntplvrinki gkqyglkcel
      121 lakceffnag gsvkdrislr mvedaekagi lkpgdtiiep tsgntgigla laaavkgyrc
      181 iivmpekmsm ekvdvlralg aeivrtptta rfdspeshvg vawrlkneip nahildqyrn
      241 asnplthydt taeeilqqcd gkidmlvata gtggtitgis rklkekcpgc kiigvdpegs
      301 ilatpeelnk tektmyeveg igydfvptvl drstvdqwyk sndedsfala rmlireegll
      361 cggssgsams vavkaakelk egqrcvvilp dsvrnymskf lsdkwmiqkg fmkeeylvkk
      421 pwwwnisvqe lslsapltvl psvtcaktve ilrekgfdqv pvvdesgvil gmvtlgnmls
      481 sllagkvqps devrkviykq fkqtdnqasg ggvinlkdnl gklshileid hfalvvheqi
      541 qyhsdgsssk rqmvfgivta idllnfvtar ererksn
//
LOCUS       XP_053932121             577 aa            linear   VRT 09-MAR-2023
DEFINITION  cystathionine beta-synthase-like protein isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053932121
VERSION     XP_053932121.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076146.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..577
                     /product="cystathionine beta-synthase-like protein isoform
                     X1"
                     /calculated_mol_wt=63633
     Region          91..567
                     /region_name="cysta_beta"
                     /note="cystathionine beta-synthase; TIGR01137"
                     /db_xref="CDD:273464"
     CDS             1..577
                     /gene="LOC104059241"
                     /coded_by="XM_054076146.1:112..1845"
                     /db_xref="GeneID:104059241"
ORIGIN      
        1 meklvseerv slskdemptl psqekpnmns cphasgkyfl pggmdnenck pnekerewir
       61 pdtpskctwk lgkpisasph rhttlpeplk ilpsilnkvg ntplvrinki gkqyglkcel
      121 lakceffnag gsvkdrislr mvedaekagi lkpgdtiiep tsgntgigla laaavkgyrc
      181 iivmpekmsm ekvdvlralg aeivrtptta rfdspeshvg vawrlkneip nahildqyrn
      241 asnplthydt taeeilqqcd gkidmlvata gtggtitgis rklkekcpgc kiigvdpegs
      301 ilatpeelnk tektmyeveg igydfvptvl drstvdqwyk sndedsfala rmlireegll
      361 cggssgsams vavkaakelk egqrcvvilp dsvrnymskf lsdkwmiqkg fmkeeylvkk
      421 pwwwnisvqe lslsapltvl psvtcaktve ilrekgfdqv pvvdesgvil gmvtlgnmls
      481 sllagkvqps devrkviykq fkqtdnqasg ggvinlkdnl gklshileid hfalvvheqi
      541 qyhsdgsssk rqmvfgivta idllnfvtar ererksn
//
LOCUS       XP_053932130             567 aa            linear   VRT 09-MAR-2023
DEFINITION  cystathionine beta-synthase-like protein isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053932130
VERSION     XP_053932130.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076155.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..567
                     /product="cystathionine beta-synthase-like protein isoform
                     X2"
                     /calculated_mol_wt=62746
     Region          91..557
                     /region_name="cysta_beta"
                     /note="cystathionine beta-synthase; TIGR01137"
                     /db_xref="CDD:273464"
     CDS             1..567
                     /gene="LOC104059241"
                     /coded_by="XM_054076155.1:217..1920"
                     /db_xref="GeneID:104059241"
ORIGIN      
        1 meklvseerv slskdemptl psqekpnmns cphasgkyfl pggmdnenck pnekerewir
       61 pdtpskctwk lgkpisasph rhttlpeplk ilpsilnkvg ntplvrinki gkqyglkcel
      121 lakceffnag gsvkdrislr mvedaekagi lkpgdtiiep tsgntgigla laaavkgyrc
      181 iivmpekmsm ekvdvlralg aeivrtptta rfdspeshvg vawrlkneip nahildqyrn
      241 asnplthydt taeeilqqcd gkidmlvata gtggtitgis rklkekcpgc kiigvdpegs
      301 ilatpeelnk tektmyeveg igydfvptvl drstvdqwyk sndedsfala rmlireegll
      361 cggssgsams vavkaakelk egqrcvvilp dsvrnymskf lsdkwmiqkg fmkeeylvkk
      421 pwwwnisvqe lslsapltvl psvtcaktve ilrekgfdqv pvvdesgvil gmvtlgnmls
      481 sllagkvqps devrkviykq fkqinlkdnl gklshileid hfalvvheqi qyhsdgsssk
      541 rqmvfgivta idllnfvtar ererksn
//
LOCUS       XP_053932146             315 aa            linear   VRT 09-MAR-2023
DEFINITION  calumenin isoform X1 [Cuculus canorus].
ACCESSION   XP_053932146
VERSION     XP_053932146.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076171.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..315
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..315
                     /product="calumenin isoform X1"
                     /calculated_mol_wt=36754
     Region          37..299
                     /region_name="EFh_CREC_Calumenin"
                     /note="EF-hand, calcium binding motif, found in calumenin;
                     cd16228"
                     /db_xref="CDD:320026"
     Region          37..66
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:320026"
     Region          72..101
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:320026"
     Region          108..137
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:320026"
     Region          155..184
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:320026"
     Region          192..221
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:320026"
     Region          233..262
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:320026"
     Region          269..299
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:320026"
     CDS             1..315
                     /gene="CALU"
                     /coded_by="XM_054076171.1:103..1050"
                     /db_xref="GeneID:104061367"
ORIGIN      
        1 mtiaqlllcl slsmlcissk ptekkdrvhh dpqlsdkvhd daqsfdydhd aflgaeeakt
       61 fdqltpeesk erlgkivski dadkdglvtv eelkawikfa qkrwiyedve rqwkghdlne
      121 dglisweeyk natygyildd pdpddgfnyk qmmvrderrf kmadkdgdlt atkeeftafl
      181 hpeeydymkd ivvqetmedi dkngdgfidl eeyigdmysq dgdadepewv ktereqfvef
      241 rdknrdgkmd keetkdwilp sdydhaeaea rhlvyesdqn kdgklskeei vekydlfvgs
      301 qatdfgealv rhdef
//
LOCUS       XP_053932157             315 aa            linear   VRT 09-MAR-2023
DEFINITION  calumenin isoform X2 [Cuculus canorus].
ACCESSION   XP_053932157
VERSION     XP_053932157.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076182.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..315
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..315
                     /product="calumenin isoform X2"
                     /calculated_mol_wt=36734
     Region          37..299
                     /region_name="EFh_CREC"
                     /note="EF-hand, calcium binding motif, found in CREC-EF
                     hand family; cl25354"
                     /db_xref="CDD:330175"
     Region          37..65
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:320021"
     Region          72..101
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:320021"
     Region          108..137
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:320021"
     Region          155..184
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:320021"
     Region          192..221
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:320021"
     Region          233..262
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:320021"
     Region          269..298
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:320021"
     CDS             1..315
                     /gene="CALU"
                     /coded_by="XM_054076182.1:103..1050"
                     /db_xref="GeneID:104061367"
ORIGIN      
        1 mtiaqlllcl slsmlcissk ptekkdrvhh dpqlsdkvhd daqsfdydhd aflgaeeakt
       61 fdqltpeesk erlgvivaki dtdkdgfvte gelkawikka qkkyvydsve rqwqefdmnq
      121 dgliswdeyr nvtygtyldd pdpddgfnyk qmmvrderrf kmadkdgdlt atkeeftafl
      181 hpeeydymkd ivvqetmedi dkngdgfidl eeyigdmysq dgdadepewv ktereqfvef
      241 rdknrdgkmd keetkdwilp sdydhaeaea rhlvyesdqn kdgklskeei vekydlfvgs
      301 qatdfgealv rhdef
//
LOCUS       XP_053932173             780 aa            linear   VRT 09-MAR-2023
DEFINITION  probable G-protein coupled receptor 156 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053932173
VERSION     XP_053932173.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076198.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..780
                     /product="probable G-protein coupled receptor 156 isoform
                     X1"
                     /calculated_mol_wt=85849
     Region          51..341
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          52..76
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          87..104
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          145..167
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          191..207
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          245..268
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          277..299
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          310..335
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..780
                     /gene="GPR156"
                     /coded_by="XM_054076198.1:446..2788"
                     /db_xref="GeneID:104055862"
ORIGIN      
        1 mepgfncsel cdgsssfgsq eqqqralqel ctvtltssdh sgksspsfst allgvvwtll
       61 tggvllalff lvftirfrkn rsrachpetw weslfsflvs dktyqktadt sppifmasld
      121 greaaghpck phgcpfssla lprwqvrlcl lcvgtslvfg pvlgkswrly kvftqrvpdk
      181 rviikdlqll amvaalvlad avllltwvfs dpvqcfrsls vslrvtekgm tcsvsrvqsc
      241 aslysdlwlv lilgfksill lygtylaglt dnvssppvnq sltlivgvnl vflaagtvcl
      301 vhrffrtwdn llfgftsggi fvcttmincf ifvpqlkqwk afeeesqtms hmakyftsps
      361 rscrsvysee qlyqligekn amkrlltekn amieslqeqv scakeklmrl msaesscdpl
      421 pltaipcsqs sgwhgdaped rcptnpeqgg wqppphllgm pppcsdaqdl qkhathqpac
      481 sqallfdign slehspkdeh gtpvgqeqpp eqlpgqdasa gmawesspki syvsseklre
      541 ileelsldgk lyspalrers prsqgpqgeq rgtwrgqegy pyihmplspy larrrrripl
      601 ppastrfpgh vsphtgcgvk easgwgcees arfslgrege vagggllhsp alsppvipge
      661 vclqpegwse wpesqgaspc lpqeqqrrqg aprgpaepsl rslyyypdsd sssstsseem
      721 fhgchrpcce vcfqsprgsl assstdtdte psecmghrte hhnglqpvvn fkedlkptfv
//
LOCUS       XP_053932184             780 aa            linear   VRT 09-MAR-2023
DEFINITION  probable G-protein coupled receptor 156 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053932184
VERSION     XP_053932184.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076209.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..780
                     /product="probable G-protein coupled receptor 156 isoform
                     X1"
                     /calculated_mol_wt=85849
     Region          51..341
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          52..76
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          87..104
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          145..167
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          191..207
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          245..268
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          277..299
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          310..335
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..780
                     /gene="GPR156"
                     /coded_by="XM_054076209.1:555..2897"
                     /db_xref="GeneID:104055862"
ORIGIN      
        1 mepgfncsel cdgsssfgsq eqqqralqel ctvtltssdh sgksspsfst allgvvwtll
       61 tggvllalff lvftirfrkn rsrachpetw weslfsflvs dktyqktadt sppifmasld
      121 greaaghpck phgcpfssla lprwqvrlcl lcvgtslvfg pvlgkswrly kvftqrvpdk
      181 rviikdlqll amvaalvlad avllltwvfs dpvqcfrsls vslrvtekgm tcsvsrvqsc
      241 aslysdlwlv lilgfksill lygtylaglt dnvssppvnq sltlivgvnl vflaagtvcl
      301 vhrffrtwdn llfgftsggi fvcttmincf ifvpqlkqwk afeeesqtms hmakyftsps
      361 rscrsvysee qlyqligekn amkrlltekn amieslqeqv scakeklmrl msaesscdpl
      421 pltaipcsqs sgwhgdaped rcptnpeqgg wqppphllgm pppcsdaqdl qkhathqpac
      481 sqallfdign slehspkdeh gtpvgqeqpp eqlpgqdasa gmawesspki syvsseklre
      541 ileelsldgk lyspalrers prsqgpqgeq rgtwrgqegy pyihmplspy larrrrripl
      601 ppastrfpgh vsphtgcgvk easgwgcees arfslgrege vagggllhsp alsppvipge
      661 vclqpegwse wpesqgaspc lpqeqqrrqg aprgpaepsl rslyyypdsd sssstsseem
      721 fhgchrpcce vcfqsprgsl assstdtdte psecmghrte hhnglqpvvn fkedlkptfv
//
LOCUS       XP_053932192             780 aa            linear   VRT 09-MAR-2023
DEFINITION  probable G-protein coupled receptor 156 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053932192
VERSION     XP_053932192.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076217.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..780
                     /product="probable G-protein coupled receptor 156 isoform
                     X1"
                     /calculated_mol_wt=85849
     Region          51..341
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          52..76
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          87..104
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          145..167
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          191..207
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          245..268
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          277..299
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          310..335
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..780
                     /gene="GPR156"
                     /coded_by="XM_054076217.1:446..2788"
                     /db_xref="GeneID:104055862"
ORIGIN      
        1 mepgfncsel cdgsssfgsq eqqqralqel ctvtltssdh sgksspsfst allgvvwtll
       61 tggvllalff lvftirfrkn rsrachpetw weslfsflvs dktyqktadt sppifmasld
      121 greaaghpck phgcpfssla lprwqvrlcl lcvgtslvfg pvlgkswrly kvftqrvpdk
      181 rviikdlqll amvaalvlad avllltwvfs dpvqcfrsls vslrvtekgm tcsvsrvqsc
      241 aslysdlwlv lilgfksill lygtylaglt dnvssppvnq sltlivgvnl vflaagtvcl
      301 vhrffrtwdn llfgftsggi fvcttmincf ifvpqlkqwk afeeesqtms hmakyftsps
      361 rscrsvysee qlyqligekn amkrlltekn amieslqeqv scakeklmrl msaesscdpl
      421 pltaipcsqs sgwhgdaped rcptnpeqgg wqppphllgm pppcsdaqdl qkhathqpac
      481 sqallfdign slehspkdeh gtpvgqeqpp eqlpgqdasa gmawesspki syvsseklre
      541 ileelsldgk lyspalrers prsqgpqgeq rgtwrgqegy pyihmplspy larrrrripl
      601 ppastrfpgh vsphtgcgvk easgwgcees arfslgrege vagggllhsp alsppvipge
      661 vclqpegwse wpesqgaspc lpqeqqrrqg aprgpaepsl rslyyypdsd sssstsseem
      721 fhgchrpcce vcfqsprgsl assstdtdte psecmghrte hhnglqpvvn fkedlkptfv
//
LOCUS       XP_053932198             780 aa            linear   VRT 09-MAR-2023
DEFINITION  probable G-protein coupled receptor 156 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053932198
VERSION     XP_053932198.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076223.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..780
                     /product="probable G-protein coupled receptor 156 isoform
                     X1"
                     /calculated_mol_wt=85849
     Region          51..341
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          52..76
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          87..104
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          145..167
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          191..207
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          245..268
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          277..299
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          310..335
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..780
                     /gene="GPR156"
                     /coded_by="XM_054076223.1:442..2784"
                     /db_xref="GeneID:104055862"
ORIGIN      
        1 mepgfncsel cdgsssfgsq eqqqralqel ctvtltssdh sgksspsfst allgvvwtll
       61 tggvllalff lvftirfrkn rsrachpetw weslfsflvs dktyqktadt sppifmasld
      121 greaaghpck phgcpfssla lprwqvrlcl lcvgtslvfg pvlgkswrly kvftqrvpdk
      181 rviikdlqll amvaalvlad avllltwvfs dpvqcfrsls vslrvtekgm tcsvsrvqsc
      241 aslysdlwlv lilgfksill lygtylaglt dnvssppvnq sltlivgvnl vflaagtvcl
      301 vhrffrtwdn llfgftsggi fvcttmincf ifvpqlkqwk afeeesqtms hmakyftsps
      361 rscrsvysee qlyqligekn amkrlltekn amieslqeqv scakeklmrl msaesscdpl
      421 pltaipcsqs sgwhgdaped rcptnpeqgg wqppphllgm pppcsdaqdl qkhathqpac
      481 sqallfdign slehspkdeh gtpvgqeqpp eqlpgqdasa gmawesspki syvsseklre
      541 ileelsldgk lyspalrers prsqgpqgeq rgtwrgqegy pyihmplspy larrrrripl
      601 ppastrfpgh vsphtgcgvk easgwgcees arfslgrege vagggllhsp alsppvipge
      661 vclqpegwse wpesqgaspc lpqeqqrrqg aprgpaepsl rslyyypdsd sssstsseem
      721 fhgchrpcce vcfqsprgsl assstdtdte psecmghrte hhnglqpvvn fkedlkptfv
//
LOCUS       XP_053932209             780 aa            linear   VRT 09-MAR-2023
DEFINITION  probable G-protein coupled receptor 156 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053932209
VERSION     XP_053932209.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076234.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..780
                     /product="probable G-protein coupled receptor 156 isoform
                     X1"
                     /calculated_mol_wt=85849
     Region          51..341
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          52..76
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          87..104
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          145..167
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          191..207
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          245..268
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          277..299
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          310..335
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..780
                     /gene="GPR156"
                     /coded_by="XM_054076234.1:323..2665"
                     /db_xref="GeneID:104055862"
ORIGIN      
        1 mepgfncsel cdgsssfgsq eqqqralqel ctvtltssdh sgksspsfst allgvvwtll
       61 tggvllalff lvftirfrkn rsrachpetw weslfsflvs dktyqktadt sppifmasld
      121 greaaghpck phgcpfssla lprwqvrlcl lcvgtslvfg pvlgkswrly kvftqrvpdk
      181 rviikdlqll amvaalvlad avllltwvfs dpvqcfrsls vslrvtekgm tcsvsrvqsc
      241 aslysdlwlv lilgfksill lygtylaglt dnvssppvnq sltlivgvnl vflaagtvcl
      301 vhrffrtwdn llfgftsggi fvcttmincf ifvpqlkqwk afeeesqtms hmakyftsps
      361 rscrsvysee qlyqligekn amkrlltekn amieslqeqv scakeklmrl msaesscdpl
      421 pltaipcsqs sgwhgdaped rcptnpeqgg wqppphllgm pppcsdaqdl qkhathqpac
      481 sqallfdign slehspkdeh gtpvgqeqpp eqlpgqdasa gmawesspki syvsseklre
      541 ileelsldgk lyspalrers prsqgpqgeq rgtwrgqegy pyihmplspy larrrrripl
      601 ppastrfpgh vsphtgcgvk easgwgcees arfslgrege vagggllhsp alsppvipge
      661 vclqpegwse wpesqgaspc lpqeqqrrqg aprgpaepsl rslyyypdsd sssstsseem
      721 fhgchrpcce vcfqsprgsl assstdtdte psecmghrte hhnglqpvvn fkedlkptfv
//
LOCUS       XP_053932217             780 aa            linear   VRT 09-MAR-2023
DEFINITION  probable G-protein coupled receptor 156 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053932217
VERSION     XP_053932217.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076242.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..780
                     /product="probable G-protein coupled receptor 156 isoform
                     X1"
                     /calculated_mol_wt=85849
     Region          51..341
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          52..76
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          87..104
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          145..167
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          191..207
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          245..268
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          277..299
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          310..335
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..780
                     /gene="GPR156"
                     /coded_by="XM_054076242.1:442..2784"
                     /db_xref="GeneID:104055862"
ORIGIN      
        1 mepgfncsel cdgsssfgsq eqqqralqel ctvtltssdh sgksspsfst allgvvwtll
       61 tggvllalff lvftirfrkn rsrachpetw weslfsflvs dktyqktadt sppifmasld
      121 greaaghpck phgcpfssla lprwqvrlcl lcvgtslvfg pvlgkswrly kvftqrvpdk
      181 rviikdlqll amvaalvlad avllltwvfs dpvqcfrsls vslrvtekgm tcsvsrvqsc
      241 aslysdlwlv lilgfksill lygtylaglt dnvssppvnq sltlivgvnl vflaagtvcl
      301 vhrffrtwdn llfgftsggi fvcttmincf ifvpqlkqwk afeeesqtms hmakyftsps
      361 rscrsvysee qlyqligekn amkrlltekn amieslqeqv scakeklmrl msaesscdpl
      421 pltaipcsqs sgwhgdaped rcptnpeqgg wqppphllgm pppcsdaqdl qkhathqpac
      481 sqallfdign slehspkdeh gtpvgqeqpp eqlpgqdasa gmawesspki syvsseklre
      541 ileelsldgk lyspalrers prsqgpqgeq rgtwrgqegy pyihmplspy larrrrripl
      601 ppastrfpgh vsphtgcgvk easgwgcees arfslgrege vagggllhsp alsppvipge
      661 vclqpegwse wpesqgaspc lpqeqqrrqg aprgpaepsl rslyyypdsd sssstsseem
      721 fhgchrpcce vcfqsprgsl assstdtdte psecmghrte hhnglqpvvn fkedlkptfv
//
LOCUS       XP_053932225             761 aa            linear   VRT 09-MAR-2023
DEFINITION  probable G-protein coupled receptor 156 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053932225
VERSION     XP_053932225.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076250.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..761
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..761
                     /product="probable G-protein coupled receptor 156 isoform
                     X2"
                     /calculated_mol_wt=83438
     Region          51..322
                     /region_name="7tmC_GPR156"
                     /note="orphan GPR156, member of the class C family of
                     seven-transmembrane G protein-coupled receptors; cd15292"
                     /db_xref="CDD:320419"
     Region          51..76
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320419"
     Site            order(54,57..58,61..62,64..65,99,103,106..107,123,127)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:320419"
     Region          88..109
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320419"
     Site            order(108,128..129,132..133,136,225,230,233..234,237,268,
                     271..272,275,279,293..294,297,300,304)
                     /site_type="other"
                     /note="putative allosteric modulator binding site
                     [chemical binding]"
                     /db_xref="CDD:320419"
     Region          126..150
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320419"
     Region          170..190
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320419"
     Region          226..252
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320419"
     Region          261..284
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320419"
     Region          291..316
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320419"
     CDS             1..761
                     /gene="GPR156"
                     /coded_by="XM_054076250.1:446..2731"
                     /db_xref="GeneID:104055862"
ORIGIN      
        1 mepgfncsel cdgsssfgsq eqqqralqel ctvtltssdh sgksspsfst allgvvwtll
       61 tggvllalff lvftirfrkn rivkmsspnl nivtllgsgl tytsaylfgi qeqslpsgdl
      121 vgkliqvrlc llcvgtslvf gpvlgkswrl ykvftqrvpd krviikdlql lamvaalvla
      181 davllltwvf sdpvqcfrsl svslrvtekg mtcsvsrvqs caslysdlwl vlilgfksil
      241 llygtylagl tdnvssppvn qsltlivgvn lvflaagtvc lvhrffrtwd nllfgftsgg
      301 ifvcttminc fifvpqlkqw kafeeesqtm shmakyftsp srscrsvyse eqlyqligek
      361 namkrlltek namieslqeq vscakeklmr lmsaesscdp lpltaipcsq ssgwhgdape
      421 drcptnpeqg gwqppphllg mpppcsdaqd lqkhathqpa csqallfdig nslehspkde
      481 hgtpvgqeqp peqlpgqdas agmawesspk isyvsseklr eileelsldg klyspalrer
      541 sprsqgpqge qrgtwrgqeg ypyihmplsp ylarrrrrip lppastrfpg hvsphtgcgv
      601 keasgwgcee sarfslgreg evagggllhs palsppvipg evclqpegws ewpesqgasp
      661 clpqeqqrrq gaprgpaeps lrslyyypds dsssstssee mfhgchrpcc evcfqsprgs
      721 lassstdtdt epsecmghrt ehhnglqpvv nfkedlkptf v
//
LOCUS       XP_009565466             207 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Mis18-alpha [Cuculus canorus].
ACCESSION   XP_009565466
VERSION     XP_009565466.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009567171.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009565466.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..207
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..207
                     /product="protein Mis18-alpha"
                     /calculated_mol_wt=22269
     Region          56..155
                     /region_name="Yippee-Mis18"
                     /note="Yippee zinc-binding/DNA-binding /Mis18, centromere
                     assembly; pfam03226"
                     /db_xref="CDD:427204"
     CDS             1..207
                     /gene="MIS18A"
                     /coded_by="XM_009567171.2:79..702"
                     /db_xref="GeneID:104064794"
ORIGIN      
        1 medplysvpa avaeldtsls lleagsgrap lavaeqqkqq qsagakdped pdllpmvflc
       61 agckrpvgdt lswvtndeea gcillrsaas svtveeerkl skrpgecgcm vetltcsgcs
      121 mtlgniyrct pkhldykrdl fcfsvdsies yilgssekqa ltdeepltle kkavleevlq
      181 rantllkale trltavessv aslhvkt
//
LOCUS       XP_053932254             304 aa            linear   VRT 09-MAR-2023
DEFINITION  tetraspanin-12 isoform X1 [Cuculus canorus].
ACCESSION   XP_053932254
VERSION     XP_053932254.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076279.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..304
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..304
                     /product="tetraspanin-12 isoform X1"
                     /calculated_mol_wt=35041
     Region          10..246
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          116..218
                     /region_name="TM4SF12_like_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), TM4SF12_like family.
                     Tetraspanins are trans-membrane proteins with 4
                     trans-membrane segments. Both the N- and C-termini lie on
                     the intracellular side of the membrane. This alignment...;
                     cd03157"
                     /db_xref="CDD:239410"
     Site            order(117,122,126,128..129,132,149,152..153,156..157)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239410"
     CDS             1..304
                     /gene="TSPAN12"
                     /coded_by="XM_054076279.1:215..1129"
                     /db_xref="GeneID:104061624"
ORIGIN      
        1 maredsvkcl rcllyalnll fwlmsisilg vsawmrdyln nvltltaetr veeaviltyf
       61 pvvhpvmiav ccfliivgml gycgtvkrnl lllvwyfgsl lvifcvelac gvwtyeqeit
      121 vpvqwsdmit lkarmtnygl pryqwlthaw nffqrefkcc gvvyftdwle mtemdwppds
      181 ccvrefpgcs kqahhedlsd lyqegcgkkm ytflrgtkql qvlrflgisi gvtqilamil
      241 titllwalyy drrdpgadqi malksdasqq lschsvellk psltrifeht smansfthfe
      301 meel
//
LOCUS       XP_053932264             304 aa            linear   VRT 09-MAR-2023
DEFINITION  tetraspanin-12 isoform X1 [Cuculus canorus].
ACCESSION   XP_053932264
VERSION     XP_053932264.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076289.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..304
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..304
                     /product="tetraspanin-12 isoform X1"
                     /calculated_mol_wt=35041
     Region          10..246
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          116..218
                     /region_name="TM4SF12_like_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), TM4SF12_like family.
                     Tetraspanins are trans-membrane proteins with 4
                     trans-membrane segments. Both the N- and C-termini lie on
                     the intracellular side of the membrane. This alignment...;
                     cd03157"
                     /db_xref="CDD:239410"
     Site            order(117,122,126,128..129,132,149,152..153,156..157)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239410"
     CDS             1..304
                     /gene="TSPAN12"
                     /coded_by="XM_054076289.1:207..1121"
                     /db_xref="GeneID:104061624"
ORIGIN      
        1 maredsvkcl rcllyalnll fwlmsisilg vsawmrdyln nvltltaetr veeaviltyf
       61 pvvhpvmiav ccfliivgml gycgtvkrnl lllvwyfgsl lvifcvelac gvwtyeqeit
      121 vpvqwsdmit lkarmtnygl pryqwlthaw nffqrefkcc gvvyftdwle mtemdwppds
      181 ccvrefpgcs kqahhedlsd lyqegcgkkm ytflrgtkql qvlrflgisi gvtqilamil
      241 titllwalyy drrdpgadqi malksdasqq lschsvellk psltrifeht smansfthfe
      301 meel
//
LOCUS       XP_053932273             304 aa            linear   VRT 09-MAR-2023
DEFINITION  tetraspanin-12 isoform X1 [Cuculus canorus].
ACCESSION   XP_053932273
VERSION     XP_053932273.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076298.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..304
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..304
                     /product="tetraspanin-12 isoform X1"
                     /calculated_mol_wt=35041
     Region          10..246
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          116..218
                     /region_name="TM4SF12_like_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), TM4SF12_like family.
                     Tetraspanins are trans-membrane proteins with 4
                     trans-membrane segments. Both the N- and C-termini lie on
                     the intracellular side of the membrane. This alignment...;
                     cd03157"
                     /db_xref="CDD:239410"
     Site            order(117,122,126,128..129,132,149,152..153,156..157)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239410"
     CDS             1..304
                     /gene="TSPAN12"
                     /coded_by="XM_054076298.1:194..1108"
                     /db_xref="GeneID:104061624"
ORIGIN      
        1 maredsvkcl rcllyalnll fwlmsisilg vsawmrdyln nvltltaetr veeaviltyf
       61 pvvhpvmiav ccfliivgml gycgtvkrnl lllvwyfgsl lvifcvelac gvwtyeqeit
      121 vpvqwsdmit lkarmtnygl pryqwlthaw nffqrefkcc gvvyftdwle mtemdwppds
      181 ccvrefpgcs kqahhedlsd lyqegcgkkm ytflrgtkql qvlrflgisi gvtqilamil
      241 titllwalyy drrdpgadqi malksdasqq lschsvellk psltrifeht smansfthfe
      301 meel
//
LOCUS       XP_053932282             304 aa            linear   VRT 09-MAR-2023
DEFINITION  tetraspanin-12 isoform X1 [Cuculus canorus].
ACCESSION   XP_053932282
VERSION     XP_053932282.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076307.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..304
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..304
                     /product="tetraspanin-12 isoform X1"
                     /calculated_mol_wt=35041
     Region          10..246
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          116..218
                     /region_name="TM4SF12_like_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), TM4SF12_like family.
                     Tetraspanins are trans-membrane proteins with 4
                     trans-membrane segments. Both the N- and C-termini lie on
                     the intracellular side of the membrane. This alignment...;
                     cd03157"
                     /db_xref="CDD:239410"
     Site            order(117,122,126,128..129,132,149,152..153,156..157)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239410"
     CDS             1..304
                     /gene="TSPAN12"
                     /coded_by="XM_054076307.1:91..1005"
                     /db_xref="GeneID:104061624"
ORIGIN      
        1 maredsvkcl rcllyalnll fwlmsisilg vsawmrdyln nvltltaetr veeaviltyf
       61 pvvhpvmiav ccfliivgml gycgtvkrnl lllvwyfgsl lvifcvelac gvwtyeqeit
      121 vpvqwsdmit lkarmtnygl pryqwlthaw nffqrefkcc gvvyftdwle mtemdwppds
      181 ccvrefpgcs kqahhedlsd lyqegcgkkm ytflrgtkql qvlrflgisi gvtqilamil
      241 titllwalyy drrdpgadqi malksdasqq lschsvellk psltrifeht smansfthfe
      301 meel
//
LOCUS       XP_053932291             279 aa            linear   VRT 09-MAR-2023
DEFINITION  tetraspanin-12 isoform X2 [Cuculus canorus].
ACCESSION   XP_053932291
VERSION     XP_053932291.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076316.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..279
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..279
                     /product="tetraspanin-12 isoform X2"
                     /calculated_mol_wt=32175
     Region          10..221
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          91..193
                     /region_name="TM4SF12_like_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), TM4SF12_like family.
                     Tetraspanins are trans-membrane proteins with 4
                     trans-membrane segments. Both the N- and C-termini lie on
                     the intracellular side of the membrane. This alignment...;
                     cd03157"
                     /db_xref="CDD:239410"
     Site            order(92,97,101,103..104,107,124,127..128,131..132)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239410"
     CDS             1..279
                     /gene="TSPAN12"
                     /coded_by="XM_054076316.1:215..1054"
                     /db_xref="GeneID:104061624"
ORIGIN      
        1 maredsvkcl rcllyalnll fwlmsisilg vsawmrdyln nvltltaetr veeaviltyf
       61 pvvhpvmiav ccfliivgml gycgtvkrnl lllvwvpvqw sdmitlkarm tnyglpryqw
      121 lthawnffqr efkccgvvyf tdwlemtemd wppdsccvre fpgcskqahh edlsdlyqeg
      181 cgkkmytflr gtkqlqvlrf lgisigvtqi lamiltitll walyydrrdp gadqimalks
      241 dasqqlschs vellkpsltr ifehtsmans fthfemeel
//
LOCUS       XP_053932296             382 aa            linear   VRT 09-MAR-2023
DEFINITION  tetraspanin-12 isoform X3 [Cuculus canorus].
ACCESSION   XP_053932296
VERSION     XP_053932296.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076321.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..382
                     /product="tetraspanin-12 isoform X3"
                     /calculated_mol_wt=42771
     Region          98..324
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          194..296
                     /region_name="TM4SF12_like_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), TM4SF12_like family.
                     Tetraspanins are trans-membrane proteins with 4
                     trans-membrane segments. Both the N- and C-termini lie on
                     the intracellular side of the membrane. This alignment...;
                     cd03157"
                     /db_xref="CDD:239410"
     Site            order(195,200,204,206..207,210,227,230..231,234..235)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239410"
     CDS             1..382
                     /gene="TSPAN12"
                     /coded_by="XM_054076321.1:16..1164"
                     /db_xref="GeneID:104061624"
ORIGIN      
        1 mrgrrggswr grrarrgsga paghgrrgsv lprsvpmspr rskalavrar eggcgermgl
       61 spagsrhgqg glgevpalpa lrpqpplldq gcqgsddlss lmsisilgvs awmrdylnnv
      121 ltltaetrve eaviltyfpv vhpvmiavcc fliivgmlgy cgtvkrnlll lvwyfgsllv
      181 ifcvelacgv wtyeqeitvp vqwsdmitlk armtnyglpr yqwlthawnf fqrefkccgv
      241 vyftdwlemt emdwppdscc vrefpgcskq ahhedlsdly qegcgkkmyt flrgtkqlqv
      301 lrflgisigv tqilamilti tllwalyydr rdpgadqima lksdasqqls chsvellkps
      361 ltrifehtsm ansfthfeme el
//
LOCUS       XP_053932310             506 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 91 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053932310
VERSION     XP_053932310.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076335.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..506
                     /product="coiled-coil domain-containing protein 91 isoform
                     X1"
                     /calculated_mol_wt=57232
     Region          <182..>400
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..506
                     /gene="CCDC91"
                     /coded_by="XM_054076335.1:376..1896"
                     /db_xref="GeneID:104066613"
ORIGIN      
        1 mddddfggfe aaesyecang ekqttspaia waafptvsev hipsdifleh sglssclvps
       61 dsftissdnv ataiqtdtdv inpavleeqv qadipvasln vtedktlits tialvdaetq
      121 rtnepksylq qavanletkl ctaeeeklkn kkelecllek ysileidflk ekkekvishq
      181 dhyealqekh kqeledmrka ghealsiive eyktllqstv qqqeaaiekq yilaiekhsh
      241 kceellnaqh qrllnileae kevlsekiee almqqsqkhk evldkcldee rqrskeavaa
      301 lakaekevvq eavlkaveee rrnmekihae erkmweeerd rhkekiaqav qeamqeqrkr
      361 nqeivkealm keqkrsekai eeavrrtree lmeyikeqkr sfligevlqh sahlcgppld
      421 pflqahvfpv lkapeldaml qvgshktrve gqnplpcpag hasfdaaqdt vgllgcdcil
      481 sahvkeveit fglfysllhs imgnmi
//
LOCUS       XP_053932320             506 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 91 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053932320
VERSION     XP_053932320.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076345.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..506
                     /product="coiled-coil domain-containing protein 91 isoform
                     X1"
                     /calculated_mol_wt=57232
     Region          <182..>400
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..506
                     /gene="CCDC91"
                     /coded_by="XM_054076345.1:52..1572"
                     /db_xref="GeneID:104066613"
ORIGIN      
        1 mddddfggfe aaesyecang ekqttspaia waafptvsev hipsdifleh sglssclvps
       61 dsftissdnv ataiqtdtdv inpavleeqv qadipvasln vtedktlits tialvdaetq
      121 rtnepksylq qavanletkl ctaeeeklkn kkelecllek ysileidflk ekkekvishq
      181 dhyealqekh kqeledmrka ghealsiive eyktllqstv qqqeaaiekq yilaiekhsh
      241 kceellnaqh qrllnileae kevlsekiee almqqsqkhk evldkcldee rqrskeavaa
      301 lakaekevvq eavlkaveee rrnmekihae erkmweeerd rhkekiaqav qeamqeqrkr
      361 nqeivkealm keqkrsekai eeavrrtree lmeyikeqkr sfligevlqh sahlcgppld
      421 pflqahvfpv lkapeldaml qvgshktrve gqnplpcpag hasfdaaqdt vgllgcdcil
      481 sahvkeveit fglfysllhs imgnmi
//
LOCUS       XP_053932331             471 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 91 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053932331
VERSION     XP_053932331.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076356.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..471
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..471
                     /product="coiled-coil domain-containing protein 91 isoform
                     X2"
                     /calculated_mol_wt=52987
     Region          <181..>365
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..471
                     /gene="CCDC91"
                     /coded_by="XM_054076356.1:376..1791"
                     /db_xref="GeneID:104066613"
ORIGIN      
        1 mddddfggfe aaesyecang ekqttspaia waafptvsev hipsdifleh sglssclvps
       61 dsftissdnv ataiqtdtdv inpavleeqv qadipvasln vtedktlits tialvdaetq
      121 rtnepksylq qavanletkl ctaeeeklkn kkekhkqele dmrkagheal siiveeyktl
      181 lqstvqqqea aiekqyilai ekhshkceel lnaqhqrlln ileaekevls ekieealmqq
      241 sqkhkevldk cldeerqrsk eavaalakae kevvqeavlk aveeerrnme kihaeerkmw
      301 eeerdrhkek iaqavqeamq eqrkrnqeiv kealmkeqkr sekaieeavr rtreelmeyi
      361 keqkrsflig evlqhsahlc gppldpflqa hvfpvlkape ldamlqvgsh ktrvegqnpl
      421 pcpaghasfd aaqdtvgllg cdcilsahvk eveitfglfy sllhsimgnm i
//
LOCUS       XP_053932339             456 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 91 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053932339
VERSION     XP_053932339.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076364.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..456
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..456
                     /product="coiled-coil domain-containing protein 91 isoform
                     X3"
                     /calculated_mol_wt=52625
     Region          <182..>401
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..456
                     /gene="CCDC91"
                     /coded_by="XM_054076364.1:376..1746"
                     /db_xref="GeneID:104066613"
ORIGIN      
        1 mddddfggfe aaesyecang ekqttspaia waafptvsev hipsdifleh sglssclvps
       61 dsftissdnv ataiqtdtdv inpavleeqv qadipvasln vtedktlits tialvdaetq
      121 rtnepksylq qavanletkl ctaeeeklkn kkelecllek ysileidflk ekkekvishq
      181 dhyealqekh kqeledmrka ghealsiive eyktllqstv qqqeaaiekq yilaiekhsh
      241 kceellnaqh qrllnileae kevlsekiee almqqsqkhk evldkcldee rqrskeavaa
      301 lakaekevvq eavlkaveee rrnmekihae erkmweeerd rhkekiaqav qeamqeqrkr
      361 nqeivkealm keqkrsekai eeavrrtree lmeyikeqkr lgnywehfgt gymqkyssyf
      421 yhkscsffal ffsliklsvr evcvvwnfsc hvhrns
//
LOCUS       XP_053932351             450 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 91 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053932351
VERSION     XP_053932351.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076376.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..450
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..450
                     /product="coiled-coil domain-containing protein 91 isoform
                     X4"
                     /calculated_mol_wt=51523
     Region          <182..>408
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..450
                     /gene="CCDC91"
                     /coded_by="XM_054076376.1:376..1728"
                     /db_xref="GeneID:104066613"
ORIGIN      
        1 mddddfggfe aaesyecang ekqttspaia waafptvsev hipsdifleh sglssclvps
       61 dsftissdnv ataiqtdtdv inpavleeqv qadipvasln vtedktlits tialvdaetq
      121 rtnepksylq qavanletkl ctaeeeklkn kkelecllek ysileidflk ekkekvishq
      181 dhyealqekh kqeledmrka ghealsiive eyktllqstv qqqeaaiekq yilaiekhsh
      241 kceellnaqh qrllnileae kevlsekiee almqqsqkhk evldkcldee rqrskeavaa
      301 lakaekevvq eavlkaveee rrnmekihae erkmweeerd rhkekiaqav qeamqeqrkr
      361 nqeivkealm keqkrsekai eeavrrtree lmeyikeqkr ldqvvrqrsl cslelflsca
      421 qkqlsvllke esttteente tdifsttdtv
//
LOCUS       XP_053932359             412 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 91 isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053932359
VERSION     XP_053932359.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076384.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..412
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..412
                     /product="coiled-coil domain-containing protein 91 isoform
                     X5"
                     /calculated_mol_wt=46835
     Region          <182..>371
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..412
                     /gene="CCDC91"
                     /coded_by="XM_054076384.1:376..1614"
                     /db_xref="GeneID:104066613"
ORIGIN      
        1 mddddfggfe aaesyecang ekqttspaia waafptvsev hipsdifleh sglssclvps
       61 dsftissdnv ataiqtdtdv inpavleeqv qadipvasln vtedktlits tialvdaetq
      121 rtnepksylq qavanletkl ctaeeeklkn kkelecllek ysileidflk ekkekvishq
      181 dhyealqekh kqeledmrka ghealsiive eyktllqstv qqqeaaiekq yilaiekhsh
      241 kceellnaqh qrllnileae kevlsekiee almqqsqkhk evldkcldee rqrskeavaa
      301 lakaekevvq eavlkaveee rrnmekihae erkmweeerd rhkekiaqav qeamqeqrkr
      361 nqldqvvrqr slcslelfls caqkqlsvll keesttteen tetdifsttd tv
//
LOCUS       XP_053932369             410 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 91 isoform X6 [Cuculus
            canorus].
ACCESSION   XP_053932369
VERSION     XP_053932369.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076394.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..410
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..410
                     /product="coiled-coil domain-containing protein 91 isoform
                     X6"
                     /calculated_mol_wt=47081
     Region          <216..>403
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..410
                     /gene="CCDC91"
                     /coded_by="XM_054076394.1:376..1608"
                     /db_xref="GeneID:104066613"
ORIGIN      
        1 mddddfggfe aaesyecang ekqttspaia waafptvsev hipsdifleh sglssclvps
       61 dsftissdnv ataiqtdtdv inpavleeqv qadipvasln vtedktlits tialvdaetq
      121 rtnepksylq qavanletkl ctaeeeklkn kkelecllek ysileidflk ekkekvishq
      181 dhyealqekh kqeledmrka ghealsiive eyktllqstv qqqeaaiekq yilaiekhsh
      241 kceellnaqh qrllnileae kevlsekiee almqqsqkhk evldkcldee rqrskeavaa
      301 lakaekevvq eavlkaveee rrnmekihae erkmweeerd rhkekiaqav qeamqeqrkr
      361 nqeivkealm keqkrsekai eeavrrtree lmeyikeqkr eeeitfsnql
//
LOCUS       XP_053932379             403 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 91 isoform X7 [Cuculus
            canorus].
ACCESSION   XP_053932379
VERSION     XP_053932379.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076404.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..403
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..403
                     /product="coiled-coil domain-containing protein 91 isoform
                     X7"
                     /calculated_mol_wt=46288
     Region          <216..>403
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..403
                     /gene="CCDC91"
                     /coded_by="XM_054076404.1:376..1587"
                     /db_xref="GeneID:104066613"
ORIGIN      
        1 mddddfggfe aaesyecang ekqttspaia waafptvsev hipsdifleh sglssclvps
       61 dsftissdnv ataiqtdtdv inpavleeqv qadipvasln vtedktlits tialvdaetq
      121 rtnepksylq qavanletkl ctaeeeklkn kkelecllek ysileidflk ekkekvishq
      181 dhyealqekh kqeledmrka ghealsiive eyktllqstv qqqeaaiekq yilaiekhsh
      241 kceellnaqh qrllnileae kevlsekiee almqqsqkhk evldkcldee rqrskeavaa
      301 lakaekevvq eavlkaveee rrnmekihae erkmweeerd rhkekiaqav qeamqeqrkr
      361 nqeivkealm keqkrsekai eeavrrtree lmeyikeqkr rle
//
LOCUS       XP_053932393             275 aa            linear   VRT 09-MAR-2023
DEFINITION  COP9 signalosome complex subunit 7a [Cuculus canorus].
ACCESSION   XP_053932393
VERSION     XP_053932393.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076418.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..275
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..275
                     /product="COP9 signalosome complex subunit 7a"
                     /calculated_mol_wt=30265
     Region          87..177
                     /region_name="PINT"
                     /note="motif in proteasome subunits, Int-6, Nip-1 and
                     TRIP-15; smart00088"
                     /db_xref="CDD:214509"
     Region          166..215
                     /region_name="CSN7a_helixI"
                     /note="COP9 signalosome complex subunit 7a helix I domain;
                     pfam18392"
                     /db_xref="CDD:465740"
     CDS             1..275
                     /gene="COPS7A"
                     /coded_by="XM_054076418.1:103..930"
                     /db_xref="GeneID:104064400"
ORIGIN      
        1 maaegkvtgq sqeqflllak aargaalasl ihqvleapgi yvfgelldvp avqeladsef
       61 spvfrlltif aygtyadyla eaanlpplte aqknklrhls vvtlaakikc ipysmlleql
      121 qlknvrqled lvieavyadv lrgsldqrnq rlevdysigr dirreelsti trtlqewcqg
      181 cevvlsgiee qvsranqhke qqlalkqqie sevanlkkti kvttaaaaaa tsqdpeqhlt
      241 elrepapgtn qrqtskktsk akglrgsaki wsksn
//
LOCUS       XP_053932403            1715 aa            linear   VRT 09-MAR-2023
DEFINITION  collagen alpha-2(IV) chain [Cuculus canorus].
ACCESSION   XP_053932403
VERSION     XP_053932403.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076428.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1715
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1715
                     /product="collagen alpha-2(IV) chain"
                     /calculated_mol_wt=169005
     Region          72..128
                     /region_name="Collagen"
                     /note="Collagen triple helix repeat (20 copies);
                     pfam01391"
                     /db_xref="CDD:460189"
     Region          <105..>349
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <235..>481
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <361..>613
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <689..>920
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <809..>1034
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <1037..>1262
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <1282..>1487
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          1494..1599
                     /region_name="C4"
                     /note="C-terminal tandem repeated domain in type 4
                     procollagen; pfam01413"
                     /db_xref="CDD:460201"
     Region          1602..1713
                     /region_name="C4"
                     /note="C-terminal tandem repeated domain in type 4
                     procollagen; pfam01413"
                     /db_xref="CDD:460201"
     CDS             1..1715
                     /gene="COL4A2"
                     /coded_by="XM_054076428.1:163..5310"
                     /db_xref="GeneID:104055030"
ORIGIN      
        1 mdisqlpsar ifvcqnpgll lilmevalsa vkvdaggkty tgpcggrdcs ggcqcfpekg
       61 srgqpgllgi qgftgppglm gipgvqgpkg hkgerghpgi sgpkgevgqr gvtgfpgadg
      121 ipghpgqpgs rgkpghdgcn gtvgdpgdpg ipgvfgfpgt igiqgpkgqk gepyilppdi
      181 asryrgepgd pgfngfpgpp gtlgiqgpvg prgergrpgp pgppgpqgpq gnrglgfyge
      241 kgeqgapgpp gppglptrel mgvpsdkhkg ergepgprge agipgvllya pekgeegvig
      301 ypgqrglpgi ngfpgltger gfpgfdgppg aygprgskge sgdvgppgpv syfpsriprk
      361 gargdpglpg vsglqgdpge egdrglpglp gfsdadgdkp glpgemgpkg ekgelgspsy
      421 qagppgfpgk hgapglrgpp gpvgapgslf glkglegapg rfgvqgfpgq rglkgpkgee
      481 gdcskcllge elrrgstgpp gppgfpgtpg qpgrkgepgd qgphgnpgyp gakgfsgqdg
      541 fpgpkgekgd sfhittkgtk girgdpglpg irgadgfpgr dgldgspgqp glpgdgirgf
      601 pgdpgfpgel gpkgfpgeag lpgegfpgpk gyrgfpgdhg qdgspgppgl pgppgdpgql
      661 dcgqvvedfs rgdgtepiws gagcvrppkg sqgrpglpga tgakgargfp gdpgpmgypg
      721 lngtrgdpgr eglpgppgft gprgdrgpng lpglqghpgl tgksgapgaa glkglpgevl
      781 eaatgppgda glpgfpglkg lpgdqgvpgi rgmdgnpglp gskghpgpqg lpglmglpgt
      841 pgtrgfpgmp gnpgpegrlg sqgpdgppga rgedgeqgfp gpvglkglsg dkgetgfpgl
      901 pglpgvsgpp girgmdgfpg dkgsrgspgv dgfkgmtglk grpgikglkg efgsygaqgd
      961 kgaqgargfk gdrgdqgppg eppkikpsmm mevkgekgda gergskgffg tkgskgmpgi
     1021 pgktgtpgsp ghpsyvagvk gdvgakgvtg lkgypgpags pgirgfpgst girgekgipg
     1081 isgqfgtpgs hgeigerget mdlpgmpglk gevgvpgltg trggagqkge ggdpgfpgie
     1141 glkgtqgvpg svgqeglpgl vgapgqqgsp gepgfqgekg tpgwpglpgr pgspglrgis
     1201 glhglpgtkg lpgspgpdgy gsagfpgsvg dkgeagepsr vegsqgppgq kgdrgvpglp
     1261 gpfgipgqeg fpgppgisni sgypgdkgsp gldgvpgypg lqgqpgipap pgskgesgqt
     1321 gvsgeigpkg srgdpglagr sgvpgypgpk grkgeqgvig fmgpvglpgd lgpigpkgdr
     1381 gvtgfqgppg spglpplppr lvaeqgspgp rgnigpqgsp gdtgsqgppg dpgfrgspgg
     1441 aglqgrggip appgsrgeqg atgfqgpvgf egqpgrpgsp glpgmpgrsv nmgyllvkhs
     1501 qseqepmcpv gmnklwsgys llyfegqeka hnqdlglags cltrfstmpf lycnpgdicy
     1561 yanrndksyw lsttaplpmm pvaeedirpy isrcsvceap amaiavhsqe asiprcpegw
     1621 rslwigysfl mhtaagdegg gqslvspgsc ledfratpfi ecngargtch yfankysfwl
     1681 ttidqpfqsk psadtlkagl irshisrcqv cmknl
//
LOCUS       XP_053932410            1715 aa            linear   VRT 09-MAR-2023
DEFINITION  collagen alpha-2(IV) chain [Cuculus canorus].
ACCESSION   XP_053932410
VERSION     XP_053932410.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076435.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1715
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1715
                     /product="collagen alpha-2(IV) chain"
                     /calculated_mol_wt=169005
     Region          72..128
                     /region_name="Collagen"
                     /note="Collagen triple helix repeat (20 copies);
                     pfam01391"
                     /db_xref="CDD:460189"
     Region          <105..>349
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <235..>481
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <361..>613
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <689..>920
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <809..>1034
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <1037..>1262
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <1282..>1487
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          1494..1599
                     /region_name="C4"
                     /note="C-terminal tandem repeated domain in type 4
                     procollagen; pfam01413"
                     /db_xref="CDD:460201"
     Region          1602..1713
                     /region_name="C4"
                     /note="C-terminal tandem repeated domain in type 4
                     procollagen; pfam01413"
                     /db_xref="CDD:460201"
     CDS             1..1715
                     /gene="COL4A2"
                     /coded_by="XM_054076435.1:54..5201"
                     /db_xref="GeneID:104055030"
ORIGIN      
        1 mdisqlpsar ifvcqnpgll lilmevalsa vkvdaggkty tgpcggrdcs ggcqcfpekg
       61 srgqpgllgi qgftgppglm gipgvqgpkg hkgerghpgi sgpkgevgqr gvtgfpgadg
      121 ipghpgqpgs rgkpghdgcn gtvgdpgdpg ipgvfgfpgt igiqgpkgqk gepyilppdi
      181 asryrgepgd pgfngfpgpp gtlgiqgpvg prgergrpgp pgppgpqgpq gnrglgfyge
      241 kgeqgapgpp gppglptrel mgvpsdkhkg ergepgprge agipgvllya pekgeegvig
      301 ypgqrglpgi ngfpgltger gfpgfdgppg aygprgskge sgdvgppgpv syfpsriprk
      361 gargdpglpg vsglqgdpge egdrglpglp gfsdadgdkp glpgemgpkg ekgelgspsy
      421 qagppgfpgk hgapglrgpp gpvgapgslf glkglegapg rfgvqgfpgq rglkgpkgee
      481 gdcskcllge elrrgstgpp gppgfpgtpg qpgrkgepgd qgphgnpgyp gakgfsgqdg
      541 fpgpkgekgd sfhittkgtk girgdpglpg irgadgfpgr dgldgspgqp glpgdgirgf
      601 pgdpgfpgel gpkgfpgeag lpgegfpgpk gyrgfpgdhg qdgspgppgl pgppgdpgql
      661 dcgqvvedfs rgdgtepiws gagcvrppkg sqgrpglpga tgakgargfp gdpgpmgypg
      721 lngtrgdpgr eglpgppgft gprgdrgpng lpglqghpgl tgksgapgaa glkglpgevl
      781 eaatgppgda glpgfpglkg lpgdqgvpgi rgmdgnpglp gskghpgpqg lpglmglpgt
      841 pgtrgfpgmp gnpgpegrlg sqgpdgppga rgedgeqgfp gpvglkglsg dkgetgfpgl
      901 pglpgvsgpp girgmdgfpg dkgsrgspgv dgfkgmtglk grpgikglkg efgsygaqgd
      961 kgaqgargfk gdrgdqgppg eppkikpsmm mevkgekgda gergskgffg tkgskgmpgi
     1021 pgktgtpgsp ghpsyvagvk gdvgakgvtg lkgypgpags pgirgfpgst girgekgipg
     1081 isgqfgtpgs hgeigerget mdlpgmpglk gevgvpgltg trggagqkge ggdpgfpgie
     1141 glkgtqgvpg svgqeglpgl vgapgqqgsp gepgfqgekg tpgwpglpgr pgspglrgis
     1201 glhglpgtkg lpgspgpdgy gsagfpgsvg dkgeagepsr vegsqgppgq kgdrgvpglp
     1261 gpfgipgqeg fpgppgisni sgypgdkgsp gldgvpgypg lqgqpgipap pgskgesgqt
     1321 gvsgeigpkg srgdpglagr sgvpgypgpk grkgeqgvig fmgpvglpgd lgpigpkgdr
     1381 gvtgfqgppg spglpplppr lvaeqgspgp rgnigpqgsp gdtgsqgppg dpgfrgspgg
     1441 aglqgrggip appgsrgeqg atgfqgpvgf egqpgrpgsp glpgmpgrsv nmgyllvkhs
     1501 qseqepmcpv gmnklwsgys llyfegqeka hnqdlglags cltrfstmpf lycnpgdicy
     1561 yanrndksyw lsttaplpmm pvaeedirpy isrcsvceap amaiavhsqe asiprcpegw
     1621 rslwigysfl mhtaagdegg gqslvspgsc ledfratpfi ecngargtch yfankysfwl
     1681 ttidqpfqsk psadtlkagl irshisrcqv cmknl
//
LOCUS       XP_053932423            1669 aa            linear   VRT 09-MAR-2023
DEFINITION  collagen alpha-1(IV) chain isoform X1 [Cuculus canorus].
ACCESSION   XP_053932423
VERSION     XP_053932423.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076448.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1669
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1669
                     /product="collagen alpha-1(IV) chain isoform X1"
                     /calculated_mol_wt=160819
     Region          <67..>317
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <260..>577
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <495..>734
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <727..>986
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <888..>1138
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <1064..>1228
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <1173..>1407
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          1446..1553
                     /region_name="C4"
                     /note="C-terminal tandem repeated domain in type 4
                     procollagen; pfam01413"
                     /db_xref="CDD:460201"
     Region          1556..1667
                     /region_name="C4"
                     /note="C-terminal tandem repeated domain in type 4
                     procollagen; pfam01413"
                     /db_xref="CDD:460201"
     CDS             1..1669
                     /gene="COL4A1"
                     /coded_by="XM_054076448.1:72..5081"
                     /db_xref="GeneID:104055019"
ORIGIN      
        1 mrlwlglgll lsaelsavsa agcsgcgkcd csgvkgqkge rglpglqgvi gfpgmqgpeg
       61 ppgspglkgd tgepglpgtk gtrgppgasg fpgnpglpgi pgqdgppgpp gipgcngtkg
      121 ergpvgppgl pgltgsigpp gppgmkgdpg evigllppsl lkgdkgfpgq pglpgppgtp
      181 gfqgvmgpqg ppgepgppgp pglpgekgym glgfqgpkge kgeqgvrgpp gppgpaphmk
      241 ekgseiikge kgdpgekgeq gfpglpgsgf kgekgepgkp gprgkpgkdg epgpkgeagl
      301 pggsgipgrp gepgakgdkg ergfpgppgr vidagpidtf gekgepgasg lpglkgqkge
      361 kgfpgvqgip gppgrpipdr vgspgvpgqr gekgekgspg fplpgppgrd gfpgppglpg
      421 ppgppgktdg idqcqqgepg spgipgppgr dgfpgemgek gdkgescalc dkegppglpg
      481 pqgppgpagf pgqagfkgdr glpgldgipg vpgppgtpgl igspgakgep gdftydsilk
      541 gekgdpglpg qpgipgregr pgkdglpglq gpkgtpgtag lkgdrgppgq pgfpgvrger
      601 gfpgppgigv pglpgdkgdr gfagtpglpg lpgtkgeagr tvplpgppga dglpgppgfp
      661 gpqgdkgnpg lpgrpglpge kgavgqpgig fpgppgpkgf pgqpgapglp gtpgtpgldg
      721 lpgvpglqgq kgepgvglpg qkglpgppgv pgfpgekgnp glpglrgeqg fpgipgqqgf
      781 rgdpglpglq glqgppgapg lgpqgtpgpp gqpgpqgppg fpgikgekgf pgvpgldmpg
      841 pkgdkgsqgq pgvpgsvglp glpgaqgavg lkgssgakge mgvmgtpglp gspgpvgdrg
      901 lpgekgsqgf kgivgpqgdp gvkgdkgeag lpgkpgtmdn mdmvslkgqk gdqgekgdhg
      961 atgekglpge ygepgipgkd gepgtpghpg pkgdqgppgy pgdpgipgqk gsvgemglpg
     1021 tpgekglpgv pgspgtpgfp gqkgekgdkg apgfpgigfp gspgqkgepg rtgipgvpgd
     1081 kgekgtagip gmpgapgpkg spgmagfpgn pgrhgekgek glpglsgipg skgepgepgv
     1141 pgpagsigqk gepgydgipg aagakgeqgi pgrglpgfpg akgdkgakge vgfpgspgsa
     1201 gipgpkgepg ypgpagpkgs qglpglpgsa iegpkgdrgp qgqpglpglp gptgppgppg
     1261 vkgakgeqgs igwpgtpggp gvkgdpgfqg vpgspglpgd igqkgdlgpp gvpgipgpkg
     1321 iagfpglkge rgdqglpgsk glqgppgppg afqlvkgdpg lpgpvgpvgl kgfpglpgpk
     1381 gqqgvtgppg vpgppgspgf dgkpgqkgev gpygppgprg fpgppgpegl pgamgppgap
     1441 svahgflvtr hsqtteepsc pfgtrliyhg ysllyvqgne rahgqdlgta gsclrkfstm
     1501 pflfcninnv cnfasrndys ywlstpepmp msmapitgdn irpfisrcsv ceapamviav
     1561 hsqtiqipsc pegwsslwig ysfvmhtsag aegsgqalas pgscleefrs apfiechgrg
     1621 tcnyyanays fwlatierne mfkkptpstl kagdlrsnvs rcqvcmrkt
//
LOCUS       XP_053932426            1669 aa            linear   VRT 09-MAR-2023
DEFINITION  collagen alpha-1(IV) chain isoform X2 [Cuculus canorus].
ACCESSION   XP_053932426
VERSION     XP_053932426.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076451.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1669
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1669
                     /product="collagen alpha-1(IV) chain isoform X2"
                     /calculated_mol_wt=160792
     Region          <67..>317
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <260..>577
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <495..>734
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <727..>986
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <888..>1138
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <1064..>1228
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <1173..>1407
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          1446..1553
                     /region_name="C4"
                     /note="C-terminal tandem repeated domain in type 4
                     procollagen; pfam01413"
                     /db_xref="CDD:460201"
     Region          1556..1667
                     /region_name="C4"
                     /note="C-terminal tandem repeated domain in type 4
                     procollagen; pfam01413"
                     /db_xref="CDD:460201"
     CDS             1..1669
                     /gene="COL4A1"
                     /coded_by="XM_054076451.1:72..5081"
                     /db_xref="GeneID:104055019"
ORIGIN      
        1 mrlwlglgll lsaelsavsa agcsgcgkcd csgvkgqkge rglpglqgvi gfpgmqgpeg
       61 ppgspglkgd tgepglpgtk gtrgppgasg fpgnpglpgi pgqdgppgpp gipgcngtkg
      121 ergpvgppgl pgltgsigpp gppgmkgdpg evigllppsl lkgdkgfpgq pglpgppgtp
      181 gfqgvmgpqg ppgepgppgp pglpgekgym glgfqgpkge kgeqgvrgpp gppgpaphmk
      241 ekgseiikge kgdpgekgeq gfpglpgsgf kgekgepgkp gprgkpgkdg epgpkgeagl
      301 pggsgipgrp gepgakgdkg ergfpgppgr vidagpidtf gekgepgasg lpglkgqkge
      361 kgfpgvqgip gppgrpipdr vgspgvpgqr gekgekgspg fplpgppgrd gfpgppglpg
      421 ppgppgktdg idqcqqgepg spgipgppgr dgfpgemgek gdkgescalc dkegppglpg
      481 pqgppgpagf pgqagfkgdr glpgldgipg vpgppgtpgl igspgakgep gdftydsilk
      541 gekgdpglpg qpgipgregr pgkdglpglq gpkgtpgtag lkgdrgppgq pgfpgvrger
      601 gfpgppgigv pglpgdkgdr gfagtpglpg lpgtkgeagr tvplpgppga dglpgppgfp
      661 gpqgdkgnpg lpgrpglpge kgavgqpgig fpgppgpkgf pgqpgapglp gtpgtpgldg
      721 lpgvpglqgq kgepgvglpg qkglpgppgv pgfpgekgnp glpglrgeqg fpgipgqqgf
      781 rgdpglpglq glqgppgapg lgpqgtpgpp gqpgpqgppg fpgikgekgf pgvpgldmpg
      841 pkgdkgsqgq pgvpgsvglp glpgaqgavg lkgssgakge mgvmgtpglp gspgpvgdrg
      901 lpgekgsqgf kgivgpqgdp gvkgdkgeag lpgkpgtmdn mdmvslkgqk gdqgekgdhg
      961 atgekglpge ygepgipgkd gepgtpghpg pkgdqgppgy pgdpgipgqk gsvgemglpg
     1021 tpgekglpgv pgspgtpgfp gqkgekgdkg apgfpgigfp gspgqkgepg rtgipgvpgd
     1081 kgekgtagip gmpgapgpkg spgmagfpgs pgrhgekgek glpglsgipg skgepgepgv
     1141 pgpagsigqk gepgydgipg aagakgeqgi pgrglpgfpg akgdkgakge vgfpgspgsa
     1201 gipgpkgepg ypgpagpkgs qglpglpgsa iegpkgdrgp qgqpglpglp gptgppgppg
     1261 vkgakgeqgs igwpgtpggp gvkgdpgfqg vpgspglpgd igqkgdlgpp gvpgipgpkg
     1321 iagfpglkge rgdqglpgsk glqgppgppg afqlvkgdpg lpgpvgpvgl kgfpglpgpk
     1381 gqqgvtgppg vpgppgspgf dgkpgqkgev gpygppgprg fpgppgpegl pgamgppgap
     1441 svahgflvtr hsqtteepsc pfgtrliyhg ysllyvqgne rahgqdlgta gsclrkfstm
     1501 pflfcninnv cnfasrndys ywlstpepmp msmapitgdn irpfisrcsv ceapamviav
     1561 hsqtiqipsc pegwsslwig ysfvmhtsag aegsgqalas pgscleefrs apfiechgrg
     1621 tcnyyanays fwlatierne mfkkptpstl kagdlrsnvs rcqvcmrkt
//
LOCUS       XP_053932433             696 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053932433
VERSION     XP_053932433.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076458.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..696
                     /product="C2 domain-containing protein 2 isoform X1"
                     /calculated_mol_wt=75450
     Region          88..215
                     /region_name="SMP_SF"
                     /note="synaptotagmin-like mitochondrial-lipid-binding
                     protein (SMP) domain superfamily; cl45903"
                     /db_xref="CDD:459248"
     Region          260..389
                     /region_name="C2"
                     /note="C2 domain; cl14603"
                     /db_xref="CDD:472691"
     CDS             1..696
                     /gene="C2CD2"
                     /coded_by="XM_054076458.1:66..2156"
                     /db_xref="GeneID:104059270"
ORIGIN      
        1 mawpaggpsw yalvalfaaa latlaaylaq yarlalrrlr apppaqrdel laegssalaw
       61 alarggwrrr wrrawlealg aeaaaradsq lltfeeddpq eplelavkqv vsvvksaqek
      121 vvscnvvgds vtfvvtvsht sptaaesqsy svklsplhlq lqlyvkdkge dvkvewilvn
      181 anetnfeiqp ivregqtagt caipdtlrdv lknlfssvsp svvlsarptd ikevqnvqnt
      241 sllpqgtspp kpprahelkl lvknialnla dhsaagstnl acivqlndpm qkfsssvakn
      301 vanpfwkeef ifelsakska lqlqivedgk ldrplsakvt vpldlfrkqp sgqqnfvlns
      361 rasesssepg prlgsisaef sfiepselkt wqtsspvpat kiekdrtvmp cgtvvttvta
      421 vktrprlegr ssplstdspv ktpvkvkvie kdfsvqaihs hgapvsktls ssdtellvln
      481 gtdpvaeaai rqlsesakqk lksprkksti iisgvsktsl sqdseaalmm dyaaamdssc
      541 keadprtvee avakitsdek lslgaseivp dtdpqqnahk awglengsqq wdtntlldqt
      601 ceeisgssls vsetgsmkks kggilkksak lffrrrhhqk dpgmsqshnd lvylqqplse
      661 etrkkggtls rilsrkllsk nksknklnga saepyv
//
LOCUS       XP_053932443             691 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053932443
VERSION     XP_053932443.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076468.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..691
                     /product="C2 domain-containing protein 2 isoform X2"
                     /calculated_mol_wt=74934
     Region          88..215
                     /region_name="SMP_SF"
                     /note="synaptotagmin-like mitochondrial-lipid-binding
                     protein (SMP) domain superfamily; cl45903"
                     /db_xref="CDD:459248"
     Region          260..389
                     /region_name="C2"
                     /note="C2 domain; cl14603"
                     /db_xref="CDD:472691"
     CDS             1..691
                     /gene="C2CD2"
                     /coded_by="XM_054076468.1:69..2144"
                     /db_xref="GeneID:104059270"
ORIGIN      
        1 mawpaggpsw yalvalfaaa latlaaylaq yarlalrrlr apppaqrdel laegssalaw
       61 alarggwrrr wrrawlealg aeaaaradsq lltfeeddpq eplelavkqv vsvvksaqek
      121 vvscnvvgds vtfvvtvsht sptaaesqsy svklsplhlq lqlyvkdkge dvkvewilvn
      181 anetnfeiqp ivregqtagt caipdtlrdv lknlfssvsp svvlsarptd ikevqnvqnt
      241 sllpqgtspp kpprahelkl lvknialnla dhsaagstnl acivqlndpm qkfsssvakn
      301 vanpfwkeef ifelsakska lqlqivedgk ldrplsakvt vpldlfrkqp sgqqnfvlns
      361 rasesssepg prlgsisaef sfiepselkt wqtsspvpat kiekdrtvmp cgtvvttvta
      421 vktrprlegr ssplstdspv ktpvkvkvie kdfsvqaihs hgapvsktls ssdtellvln
      481 gtdpvaeaai rqlsesakqk lksprkksti iisgvskdse aalmmdyaaa mdssckeadp
      541 rtveeavaki tsdeklslga seivpdtdpq qnahkawgle ngsqqwdtnt lldqtceeis
      601 gsslsvsetg smkkskggil kksaklffrr rhhqkdpgms qshndlvylq qplseetrkk
      661 ggtlsrilsr kllsknkskn klngasaepy v
//
LOCUS       XP_053932453             629 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053932453
VERSION     XP_053932453.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076478.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..629
                     /product="C2 domain-containing protein 2 isoform X3"
                     /calculated_mol_wt=67962
     Region          88..215
                     /region_name="SMP_SF"
                     /note="synaptotagmin-like mitochondrial-lipid-binding
                     protein (SMP) domain superfamily; cl45903"
                     /db_xref="CDD:459248"
     Region          260..389
                     /region_name="C2"
                     /note="C2 domain; cl14603"
                     /db_xref="CDD:472691"
     CDS             1..629
                     /gene="C2CD2"
                     /coded_by="XM_054076478.1:69..1958"
                     /db_xref="GeneID:104059270"
ORIGIN      
        1 mawpaggpsw yalvalfaaa latlaaylaq yarlalrrlr apppaqrdel laegssalaw
       61 alarggwrrr wrrawlealg aeaaaradsq lltfeeddpq eplelavkqv vsvvksaqek
      121 vvscnvvgds vtfvvtvsht sptaaesqsy svklsplhlq lqlyvkdkge dvkvewilvn
      181 anetnfeiqp ivregqtagt caipdtlrdv lknlfssvsp svvlsarptd ikevqnvqnt
      241 sllpqgtspp kpprahelkl lvknialnla dhsaagstnl acivqlndpm qkfsssvakn
      301 vanpfwkeef ifelsakska lqlqivedgk ldrplsakvt vpldlfrkqp sgqqnfvlns
      361 rasesssepg prlgsisaef sfiepselkt wqtsspvpat kiekdrtvmp cgtvvttvta
      421 vktrprlegr ssplstdspv ktpvkvkvie kdfsvqaihs hgapvsktls ssdtellvln
      481 gtdpvaeaai rqlsesakqk lksprkksti iisgvsktsl sqdseaalmm dyaaamdssc
      541 keadprtvee avakitsdek lslgaseivp dtdpqqnahk awglengsqq wdtntlldqt
      601 ceeisgssls vsetgsmkks kedyyanqn
//
LOCUS       XP_053932468             421 aa            linear   VRT 09-MAR-2023
DEFINITION  coxsackievirus and adenovirus receptor isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053932468
VERSION     XP_053932468.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076493.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..421
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..421
                     /product="coxsackievirus and adenovirus receptor isoform
                     X1"
                     /calculated_mol_wt=46730
     Region          87..203
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          105..109
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409552"
     Region          122..126
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409552"
     Region          171..175
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409552"
     Region          185..190
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409552"
     Region          198..201
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409552"
     Region          223..297
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          226..230
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          240..244
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          263..267
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          277..282
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          290..293
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..421
                     /gene="CXADR"
                     /coded_by="XM_054076493.1:16..1281"
                     /db_xref="GeneID:104061593"
ORIGIN      
        1 malnlfvflw preskgvdkq kyppqtkykp dwawaakngt ehvfayavns eglctywefp
       61 fllvcvfpgm iiratsaccy esltrslqit sadqsmfeka qgekvtlpct fvlseedegp
      121 ldiewvlipa dnqkkeqtii mysvdriynh yytamtgrvq fasldprsgd gsldilnlks
      181 adtgtyqckv kkapgvqsqk iqllvlvkpa rtkcsiegsq eigkdvvlkc ksqegsplls
      241 ydwrrasgtl elpntsmqnr dtgelllkna sqdysgtync ivsnrvgtde csirlnvtpp
      301 intagiiaga iigtllglsv laflvfccck khrdkkyeke vhhdiredvp ppksrsstar
      361 syigsnrssl gsmspsnmeg ytktpysqvp sedfertpgq nqtfapskyd iahkigditv
      421 v
//
LOCUS       XP_053932476             375 aa            linear   VRT 09-MAR-2023
DEFINITION  coxsackievirus and adenovirus receptor isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053932476
VERSION     XP_053932476.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076501.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..375
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..375
                     /product="coxsackievirus and adenovirus receptor isoform
                     X2"
                     /calculated_mol_wt=40644
     Region          28..144
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          46..50
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409552"
     Region          63..67
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409552"
     Region          112..116
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409552"
     Region          126..131
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409552"
     Region          139..142
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409552"
     Region          164..238
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          167..171
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          181..185
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          204..208
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          218..223
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          231..234
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..375
                     /gene="CXADR"
                     /coded_by="XM_054076501.1:73..1200"
                     /db_xref="GeneID:104061593"
ORIGIN      
        1 meppavpvav vavaslvllc cagltrslqi tsadqsmfek aqgekvtlpc tfvlseedeg
       61 pldiewvlip adnqkkeqti imysvdriyn hyytamtgrv qfasldprsg dgsldilnlk
      121 sadtgtyqck vkkapgvqsq kiqllvlvkp artkcsiegs qeigkdvvlk cksqegspll
      181 sydwrrasgt lelpntsmqn rdtgelllkn asqdysgtyn civsnrvgtd ecsirlnvtp
      241 pintagiiag aiigtllgls vlaflvfccc kkhrdkkyek evhhdiredv pppksrssta
      301 rsyigsnrss lgsmspsnme gytktpysqv psedfertpg qnqtfapskv aapnlsrmga
      361 vpvmipaqsk dgsiv
//
LOCUS       XP_053932487             364 aa            linear   VRT 09-MAR-2023
DEFINITION  coxsackievirus and adenovirus receptor isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053932487
VERSION     XP_053932487.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076512.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..364
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..364
                     /product="coxsackievirus and adenovirus receptor isoform
                     X3"
                     /calculated_mol_wt=39766
     Region          17..133
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          35..39
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409552"
     Region          52..56
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409552"
     Region          101..105
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409552"
     Region          115..120
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409552"
     Region          128..131
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409552"
     Region          153..227
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          156..160
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          170..174
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          193..197
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          207..212
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          220..223
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..364
                     /gene="CXADR"
                     /coded_by="XM_054076512.1:1..1095"
                     /db_xref="GeneID:104061593"
ORIGIN      
        1 mrrgpmrtsa lgltrslqit sadqsmfeka qgekvtlpct fvlseedegp ldiewvlipa
       61 dnqkkeqtii mysvdriynh yytamtgrvq fasldprsgd gsldilnlks adtgtyqckv
      121 kkapgvqsqk iqllvlvkpa rtkcsiegsq eigkdvvlkc ksqegsplls ydwrrasgtl
      181 elpntsmqnr dtgelllkna sqdysgtync ivsnrvgtde csirlnvtpp intagiiaga
      241 iigtllglsv laflvfccck khrdkkyeke vhhdiredvp ppksrsstar syigsnrssl
      301 gsmspsnmeg ytktpysqvp sedfertpgq nqtfapskva apnlsrmgav pvmipaqskd
      361 gsiv
//
LOCUS       XP_053932494             365 aa            linear   VRT 09-MAR-2023
DEFINITION  coxsackievirus and adenovirus receptor isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053932494
VERSION     XP_053932494.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076519.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..365
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..365
                     /product="coxsackievirus and adenovirus receptor isoform
                     X4"
                     /calculated_mol_wt=39882
     Region          18..134
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          36..40
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409552"
     Region          53..57
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409552"
     Region          102..106
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409552"
     Region          116..121
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409552"
     Region          129..132
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409552"
     Region          154..228
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          157..161
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          171..175
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          194..198
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          208..213
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          221..224
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..365
                     /gene="CXADR"
                     /coded_by="XM_054076519.1:136..1233"
                     /db_xref="GeneID:104061593"
ORIGIN      
        1 miiratsacc yesltrslqi tsadqsmfek aqgekvtlpc tfvlseedeg pldiewvlip
       61 adnqkkeqti imysvdriyn hyytamtgrv qfasldprsg dgsldilnlk sadtgtyqck
      121 vkkapgvqsq kiqllvlvkp artkcsiegs qeigkdvvlk cksqegspll sydwrrasgt
      181 lelpntsmqn rdtgelllkn asqdysgtyn civsnrvgtd ecsirlnvtp pintagiiag
      241 aiigtllgls vlaflvfccc kkhrdkkyek evhhdiredv pppksrssta rsyigsnrss
      301 lgsmspsnme gytktpysqv psedfertpg qnqtfapskv aapnlsrmga vpvmipaqsk
      361 dgsiv
//
LOCUS       XP_053932509             485 aa            linear   VRT 09-MAR-2023
DEFINITION  transcriptional regulator ERG isoform X1 [Cuculus canorus].
ACCESSION   XP_053932509
VERSION     XP_053932509.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076534.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..485
                     /product="transcriptional regulator ERG isoform X1"
                     /calculated_mol_wt=54498
     Region          133..207
                     /region_name="SAM_PNT-ERG"
                     /note="Sterile alpha motif (SAM)/Pointed domain of ERG
                     transcription factor; cd08540"
                     /db_xref="CDD:176090"
     Region          316..399
                     /region_name="ETS"
                     /note="erythroblast transformation specific domain;
                     smart00413"
                     /db_xref="CDD:197710"
     CDS             1..485
                     /gene="ERG"
                     /coded_by="XM_054076534.1:47..1504"
                     /db_xref="GeneID:104059226"
ORIGIN      
        1 mgkcnfmvsi avealsvvse dqslfecayg sphlaktemt asssseygqt skmsprvpqq
       61 dwlsqpparv tikmecnpnq vngsrnspdd csvakggkmv sgsdnvgmny gnymeekhvp
      121 ppnmttnerr vivpadptlw stdhvrqwle wavkeyglpd vdillfqnid gkelckmtkd
      181 dfqrltpsyn adillshlhy lretplphlt sddvdkalqn sprlmharnt ggatfifpnt
      241 svypeatqri ttrpdlpyeq arrsawtshs hpspqskatq pssstvpkte dqrpqldpyq
      301 ilgptssrla npgsgqiqlw qfllellsds snsncitweg tngefkmtdp devarrwger
      361 kskpnmnydk lsralryyyd knimtkvhgk ryaykfdfhg iaqalqphpp essmykypsd
      421 lpymssyhah pqkmnfvaph ppalpvtsss ffaapnpywn sptggiypnt rlpaahmpsh
      481 lgtyy
//
LOCUS       XP_053932520             486 aa            linear   VRT 09-MAR-2023
DEFINITION  transcriptional regulator ERG isoform X2 [Cuculus canorus].
ACCESSION   XP_053932520
VERSION     XP_053932520.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076545.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..486
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..486
                     /product="transcriptional regulator ERG isoform X2"
                     /calculated_mol_wt=54619
     Region          134..208
                     /region_name="SAM_PNT-ERG"
                     /note="Sterile alpha motif (SAM)/Pointed domain of ERG
                     transcription factor; cd08540"
                     /db_xref="CDD:176090"
     Region          317..400
                     /region_name="ETS"
                     /note="erythroblast transformation specific domain;
                     smart00413"
                     /db_xref="CDD:197710"
     CDS             1..486
                     /gene="ERG"
                     /coded_by="XM_054076545.1:248..1708"
                     /db_xref="GeneID:104059226"
ORIGIN      
        1 miqtvpdpaa hikealsvvs edqslfecay gsphlaktem tasssseygq tskmsprvpq
       61 qdwlsqppar vtikmecnpn qvngsrnspd dcsvakggkm vsgsdnvgmn ygnymeekhv
      121 pppnmttner rvivpadptl wstdhvrqwl ewavkeyglp dvdillfqni dgkelckmtk
      181 ddfqrltpsy nadillshlh ylretplphl tsddvdkalq nsprlmharn tggatfifpn
      241 tsvypeatqr ittrpdlpye qarrsawtsh shpspqskat qpssstvpkt edqrpqldpy
      301 qilgptssrl anpgsgqiql wqfllellsd ssnsncitwe gtngefkmtd pdevarrwge
      361 rkskpnmnyd klsralryyy dknimtkvhg kryaykfdfh giaqalqphp pessmykyps
      421 dlpymssyha hpqkmnfvap hppalpvtss sffaapnpyw nsptggiypn trlpaahmps
      481 hlgtyy
//
LOCUS       XP_009559160             479 aa            linear   VRT 09-MAR-2023
DEFINITION  transcriptional regulator ERG isoform X3 [Cuculus canorus].
ACCESSION   XP_009559160
VERSION     XP_009559160.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560865.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..479
                     /product="transcriptional regulator ERG isoform X3"
                     /calculated_mol_wt=53849
     Region          127..201
                     /region_name="SAM_PNT-ERG"
                     /note="Sterile alpha motif (SAM)/Pointed domain of ERG
                     transcription factor; cd08540"
                     /db_xref="CDD:176090"
     Region          310..393
                     /region_name="ETS"
                     /note="erythroblast transformation specific domain;
                     smart00413"
                     /db_xref="CDD:197710"
     CDS             1..479
                     /gene="ERG"
                     /coded_by="XM_009560865.2:141..1580"
                     /db_xref="GeneID:104059226"
ORIGIN      
        1 mastikeals vvsedqslfe caygsphlak temtasssse ygqtskmspr vpqqdwlsqp
       61 parvtikmec npnqvngsrn spddcsvakg gkmvsgsdnv gmnygnymee khvpppnmtt
      121 nerrvivpad ptlwstdhvr qwlewavkey glpdvdillf qnidgkelck mtkddfqrlt
      181 psynadills hlhylretpl phltsddvdk alqnsprlmh arntggatfi fpntsvypea
      241 tqrittrpdl pyeqarrsaw tshshpspqs katqpssstv pktedqrpql dpyqilgpts
      301 srlanpgsgq iqlwqfllel lsdssnsnci twegtngefk mtdpdevarr wgerkskpnm
      361 nydklsralr yyydknimtk vhgkryaykf dfhgiaqalq phppessmyk ypsdlpymss
      421 yhahpqkmnf vaphppalpv tsssffaapn pywnsptggi ypntrlpaah mpshlgtyy
//
LOCUS       XP_053932533             458 aa            linear   VRT 09-MAR-2023
DEFINITION  transcriptional regulator ERG isoform X4 [Cuculus canorus].
ACCESSION   XP_053932533
VERSION     XP_053932533.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076558.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..458
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..458
                     /product="transcriptional regulator ERG isoform X4"
                     /calculated_mol_wt=51587
     Region          133..206
                     /region_name="SAM_PNT-ERG"
                     /note="Sterile alpha motif (SAM)/Pointed domain of ERG
                     transcription factor; cd08540"
                     /db_xref="CDD:176090"
     Region          289..372
                     /region_name="ETS"
                     /note="erythroblast transformation specific domain;
                     smart00413"
                     /db_xref="CDD:197710"
     CDS             1..458
                     /gene="ERG"
                     /coded_by="XM_054076558.1:51..1427"
                     /db_xref="GeneID:104059226"
ORIGIN      
        1 mgkcnfmvsi avealsvvse dqslfecayg sphlaktemt asssseygqt skmsprvpqq
       61 dwlsqpparv tikmecnpnq vngsrnspdd csvakggkmv sgsdnvgmny gnymeekhvp
      121 ppnmttnerr vivpadptlw stdhvrqwle wavkeyglpd vdillfqnid gkelckmtkd
      181 dfqrltpsyn adillshlhy lrergatfif pntsvypeat qrittrpdlp yeqarrsawt
      241 shshpspqsk atqpssstvp ktedqrpqld pyqilgptss rlanpgsgqi qlwqfllell
      301 sdssnsncit wegtngefkm tdpdevarrw gerkskpnmn ydklsralry yydknimtkv
      361 hgkryaykfd fhgiaqalqp hppessmyky psdlpymssy hahpqkmnfv aphppalpvt
      421 sssffaapnp ywnsptggiy pntrlpaahm pshlgtyy
//
LOCUS       XP_053932538             447 aa            linear   VRT 09-MAR-2023
DEFINITION  transcriptional regulator ERG isoform X5 [Cuculus canorus].
ACCESSION   XP_053932538
VERSION     XP_053932538.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076563.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..447
                     /product="transcriptional regulator ERG isoform X5"
                     /calculated_mol_wt=50424
     Region          95..169
                     /region_name="SAM_PNT-ERG"
                     /note="Sterile alpha motif (SAM)/Pointed domain of ERG
                     transcription factor; cd08540"
                     /db_xref="CDD:176090"
     Region          278..361
                     /region_name="ETS"
                     /note="erythroblast transformation specific domain;
                     smart00413"
                     /db_xref="CDD:197710"
     CDS             1..447
                     /gene="ERG"
                     /coded_by="XM_054076563.1:207..1550"
                     /db_xref="GeneID:104059226"
ORIGIN      
        1 mtasssseyg qtskmsprvp qqdwlsqppa rvtikmecnp nqvngsrnsp ddcsvakggk
       61 mvsgsdnvgm nygnymeekh vpppnmttne rrvivpadpt lwstdhvrqw lewavkeygl
      121 pdvdillfqn idgkelckmt kddfqrltps ynadillshl hylretplph ltsddvdkal
      181 qnsprlmhar ntggatfifp ntsvypeatq rittrpdlpy eqarrsawts hshpspqska
      241 tqpssstvpk tedqrpqldp yqilgptssr lanpgsgqiq lwqfllells dssnsncitw
      301 egtngefkmt dpdevarrwg erkskpnmny dklsralryy ydknimtkvh gkryaykfdf
      361 hgiaqalqph ppessmykyp sdlpymssyh ahpqkmnfva phppalpvts ssffaapnpy
      421 wnsptggiyp ntrlpaahmp shlgtyy
//
LOCUS       XP_053932545             447 aa            linear   VRT 09-MAR-2023
DEFINITION  transcriptional regulator ERG isoform X5 [Cuculus canorus].
ACCESSION   XP_053932545
VERSION     XP_053932545.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076570.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..447
                     /product="transcriptional regulator ERG isoform X5"
                     /calculated_mol_wt=50424
     Region          95..169
                     /region_name="SAM_PNT-ERG"
                     /note="Sterile alpha motif (SAM)/Pointed domain of ERG
                     transcription factor; cd08540"
                     /db_xref="CDD:176090"
     Region          278..361
                     /region_name="ETS"
                     /note="erythroblast transformation specific domain;
                     smart00413"
                     /db_xref="CDD:197710"
     CDS             1..447
                     /gene="ERG"
                     /coded_by="XM_054076570.1:100..1443"
                     /db_xref="GeneID:104059226"
ORIGIN      
        1 mtasssseyg qtskmsprvp qqdwlsqppa rvtikmecnp nqvngsrnsp ddcsvakggk
       61 mvsgsdnvgm nygnymeekh vpppnmttne rrvivpadpt lwstdhvrqw lewavkeygl
      121 pdvdillfqn idgkelckmt kddfqrltps ynadillshl hylretplph ltsddvdkal
      181 qnsprlmhar ntggatfifp ntsvypeatq rittrpdlpy eqarrsawts hshpspqska
      241 tqpssstvpk tedqrpqldp yqilgptssr lanpgsgqiq lwqfllells dssnsncitw
      301 egtngefkmt dpdevarrwg erkskpnmny dklsralryy ydknimtkvh gkryaykfdf
      361 hgiaqalqph ppessmykyp sdlpymssyh ahpqkmnfva phppalpvts ssffaapnpy
      421 wnsptggiyp ntrlpaahmp shlgtyy
//
LOCUS       XP_053932555             447 aa            linear   VRT 09-MAR-2023
DEFINITION  transcriptional regulator ERG isoform X5 [Cuculus canorus].
ACCESSION   XP_053932555
VERSION     XP_053932555.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076580.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..447
                     /product="transcriptional regulator ERG isoform X5"
                     /calculated_mol_wt=50424
     Region          95..169
                     /region_name="SAM_PNT-ERG"
                     /note="Sterile alpha motif (SAM)/Pointed domain of ERG
                     transcription factor; cd08540"
                     /db_xref="CDD:176090"
     Region          278..361
                     /region_name="ETS"
                     /note="erythroblast transformation specific domain;
                     smart00413"
                     /db_xref="CDD:197710"
     CDS             1..447
                     /gene="ERG"
                     /coded_by="XM_054076580.1:274..1617"
                     /db_xref="GeneID:104059226"
ORIGIN      
        1 mtasssseyg qtskmsprvp qqdwlsqppa rvtikmecnp nqvngsrnsp ddcsvakggk
       61 mvsgsdnvgm nygnymeekh vpppnmttne rrvivpadpt lwstdhvrqw lewavkeygl
      121 pdvdillfqn idgkelckmt kddfqrltps ynadillshl hylretplph ltsddvdkal
      181 qnsprlmhar ntggatfifp ntsvypeatq rittrpdlpy eqarrsawts hshpspqska
      241 tqpssstvpk tedqrpqldp yqilgptssr lanpgsgqiq lwqfllells dssnsncitw
      301 egtngefkmt dpdevarrwg erkskpnmny dklsralryy ydknimtkvh gkryaykfdf
      361 hgiaqalqph ppessmykyp sdlpymssyh ahpqkmnfva phppalpvts ssffaapnpy
      421 wnsptggiyp ntrlpaahmp shlgtyy
//
LOCUS       XP_053932562             447 aa            linear   VRT 09-MAR-2023
DEFINITION  transcriptional regulator ERG isoform X5 [Cuculus canorus].
ACCESSION   XP_053932562
VERSION     XP_053932562.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076587.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..447
                     /product="transcriptional regulator ERG isoform X5"
                     /calculated_mol_wt=50424
     Region          95..169
                     /region_name="SAM_PNT-ERG"
                     /note="Sterile alpha motif (SAM)/Pointed domain of ERG
                     transcription factor; cd08540"
                     /db_xref="CDD:176090"
     Region          278..361
                     /region_name="ETS"
                     /note="erythroblast transformation specific domain;
                     smart00413"
                     /db_xref="CDD:197710"
     CDS             1..447
                     /gene="ERG"
                     /coded_by="XM_054076587.1:101..1444"
                     /db_xref="GeneID:104059226"
ORIGIN      
        1 mtasssseyg qtskmsprvp qqdwlsqppa rvtikmecnp nqvngsrnsp ddcsvakggk
       61 mvsgsdnvgm nygnymeekh vpppnmttne rrvivpadpt lwstdhvrqw lewavkeygl
      121 pdvdillfqn idgkelckmt kddfqrltps ynadillshl hylretplph ltsddvdkal
      181 qnsprlmhar ntggatfifp ntsvypeatq rittrpdlpy eqarrsawts hshpspqska
      241 tqpssstvpk tedqrpqldp yqilgptssr lanpgsgqiq lwqfllells dssnsncitw
      301 egtngefkmt dpdevarrwg erkskpnmny dklsralryy ydknimtkvh gkryaykfdf
      361 hgiaqalqph ppessmykyp sdlpymssyh ahpqkmnfva phppalpvts ssffaapnpy
      421 wnsptggiyp ntrlpaahmp shlgtyy
//
LOCUS       XP_053932576             714 aa            linear   VRT 09-MAR-2023
DEFINITION  integrator complex subunit 13 isoform X1 [Cuculus canorus].
ACCESSION   XP_053932576
VERSION     XP_053932576.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076601.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..714
                     /product="integrator complex subunit 13 isoform X1"
                     /calculated_mol_wt=80942
     Region          4..700
                     /region_name="Mat89Bb"
                     /note="Cell cycle and development regulator Mat89Bb;
                     pfam10221"
                     /db_xref="CDD:463006"
     CDS             1..714
                     /gene="INTS13"
                     /coded_by="XM_054076601.1:406..2550"
                     /db_xref="GeneID:104067162"
ORIGIN      
        1 mkifseshkt vfvvdhcpym aescrqhvef dmlvknrtqg iiplapisks lwtcsvessm
       61 eycrimydif pfkklvnfiv sdsgahvlns wtqedqnlqe lmaalaavgp pnpradpecc
      121 silhglvaav ealckiteyq heartmlmen aervgnrgri icitnaksds hvrmledcvq
      181 etihehnkla ansdhlmqiq kcelvlihty pvgedslvsd rpkkelspvl tsevhsvrag
      241 rhlatklnvl vqqhfdlast titnipmkpt fnvcdqeeqh antsanydve llhhkeahvd
      301 flksgdnhag gnsregafke tvtlkwctpr tnsvelhyct gayrispvdv nsrpsscltn
      361 fllngrsvll eqprksgskv ishmlsshgg eiflhvlsss rsiledppsi segcggrvtd
      421 yritdfgefm renrltpfle prykidgsle iplerakdql ekhtrywpmi isqttifnmq
      481 avvplasviv keamtdedvl ncqktiynlv dmerkndplp istvgtrgkg pkrdeqyrim
      541 wneletlvra hinnsdkhqr vleclmacrs kppeeeerkk rgrkredked kseklgkdye
      601 sdkpwqeser lkglldreke elteaevikd spdspeppnk kplitmdeap tvekakgpms
      661 llslwsnrin tansrkhqef igrlnsvnnk aelyqhlkee ngmettengk agrq
//
LOCUS       XP_053932584             706 aa            linear   VRT 09-MAR-2023
DEFINITION  integrator complex subunit 13 isoform X2 [Cuculus canorus].
ACCESSION   XP_053932584
VERSION     XP_053932584.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076609.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..706
                     /product="integrator complex subunit 13 isoform X2"
                     /calculated_mol_wt=80037
     Region          4..692
                     /region_name="Mat89Bb"
                     /note="Cell cycle and development regulator Mat89Bb;
                     pfam10221"
                     /db_xref="CDD:463006"
     CDS             1..706
                     /gene="INTS13"
                     /coded_by="XM_054076609.1:401..2521"
                     /db_xref="GeneID:104067162"
ORIGIN      
        1 mkifseshkt vfvvdhcpym aescrqhvef dmlvknrtqg iiplapisks lwtcsvessm
       61 eycrimydif pfkklvnfiv sdsgahvlns wtqedqnlqe lmaalaavgp pnpradpecc
      121 silhglvaav ealckiteyq heartmlmen aervgnrgri icitnaksds hvrmledcvq
      181 etihehnkla ansdhlmqiq kcelvlihty pvgedslvsd rpkkelspvl tsevhsvrag
      241 rhlatklnvl vqqhfdlast titnipmkee qhantsanyd vellhhkeah vdflksgdnh
      301 aggnsregaf ketvtlkwct prtnsvelhy ctgayrispv dvnsrpsscl tnfllngrsv
      361 lleqprksgs kvishmlssh ggeiflhvls ssrsiledpp sisegcggrv tdyritdfge
      421 fmrenrltpf leprykidgs leiplerakd qlekhtrywp miisqttifn mqavvplasv
      481 ivkeamtded vlncqktiyn lvdmerkndp lpistvgtrg kgpkrdeqyr imwneletlv
      541 rahinnsdkh qrvleclmac rskppeeeer kkrgrkredk edkseklgkd yesdkpwqes
      601 erlkglldre keelteaevi kdspdspepp nkkplitmde aptvekakgp msllslwsnr
      661 intansrkhq efigrlnsvn nkaelyqhlk eengmetten gkagrq
//
LOCUS       XP_053932595             421 aa            linear   VRT 09-MAR-2023
DEFINITION  UDP-glucuronic acid decarboxylase 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053932595
VERSION     XP_053932595.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076620.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..421
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..421
                     /product="UDP-glucuronic acid decarboxylase 1 isoform X1"
                     /calculated_mol_wt=47507
     Region          5..79
                     /region_name="UXS1_N"
                     /note="UDP-glucuronate decarboxylase N-terminal;
                     pfam11803"
                     /db_xref="CDD:463356"
     Region          90..393
                     /region_name="UGD_SDR_e"
                     /note="UDP-glucuronate decarboxylase (UGD) and related
                     proteins, extended (e) SDRs; cd05230"
                     /db_xref="CDD:187541"
     Site            order(96,98..101,120..125,144..146,160..164,179,201..203,
                     232,236,259..262,273)
                     /site_type="other"
                     /note="NAD binding site [chemical binding]"
                     /db_xref="CDD:187541"
     Site            order(149..150,185..186,189..190,192..193,246)
                     /site_type="other"
                     /note="putative substrate binding site 2 [chemical
                     binding]"
                     /db_xref="CDD:187541"
     Site            order(166,229,261,272..274,277..278,289..291,296,298,332,
                     358,362)
                     /site_type="other"
                     /note="putative substrate binding site 1 [chemical
                     binding]"
                     /db_xref="CDD:187541"
     Site            order(180,203,232,236)
                     /site_type="active"
                     /db_xref="CDD:187541"
     CDS             1..421
                     /gene="UXS1"
                     /coded_by="XM_054076620.1:294..1559"
                     /db_xref="GeneID:104056681"
ORIGIN      
        1 mvskgpllrl ltainrrrmk llvglafvay vasvwgnfvn mrslpengdq kveskieeav
       61 aplrekikdl eksftqkypp vkflsekdrk rilitggagf vgshltdklm mdghevtvvd
      121 nfftgrkrnv ehwighenfe linhdvvepl yievdqiyhl aspasppnym ynpiktlktn
      181 tigtlnmlgl akrvgarlll astsevygdp evhpqnedyw ghvnpigpra cydegkrvae
      241 tmcyaymkqe gvevrvarif ntfgprmhmn dgrvvsnfil qalqgepltv ygpgtqtraf
      301 qyvsdlvngl valmnsnvss pvnlgnpeeh tilefaqlik klvgsgseiq flseaqddpq
      361 krkpdirkak lllgwepvvp leeglnkaih yfrkeleyqa nnqyipkpkp armkkgrtrh
      421 n
//
LOCUS       XP_053932602             381 aa            linear   VRT 09-MAR-2023
DEFINITION  UDP-glucuronic acid decarboxylase 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053932602
VERSION     XP_053932602.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076627.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..381
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..381
                     /product="UDP-glucuronic acid decarboxylase 1 isoform X2"
                     /calculated_mol_wt=43049
     Region          <1..39
                     /region_name="UXS1_N"
                     /note="UDP-glucuronate decarboxylase N-terminal;
                     pfam11803"
                     /db_xref="CDD:463356"
     Region          50..353
                     /region_name="UGD_SDR_e"
                     /note="UDP-glucuronate decarboxylase (UGD) and related
                     proteins, extended (e) SDRs; cd05230"
                     /db_xref="CDD:187541"
     Site            order(56,58..61,80..85,104..106,120..124,139,161..163,192,
                     196,219..222,233)
                     /site_type="other"
                     /note="NAD binding site [chemical binding]"
                     /db_xref="CDD:187541"
     Site            order(109..110,145..146,149..150,152..153,206)
                     /site_type="other"
                     /note="putative substrate binding site 2 [chemical
                     binding]"
                     /db_xref="CDD:187541"
     Site            order(126,189,221,232..234,237..238,249..251,256,258,292,
                     318,322)
                     /site_type="other"
                     /note="putative substrate binding site 1 [chemical
                     binding]"
                     /db_xref="CDD:187541"
     Site            order(140,163,192,196)
                     /site_type="active"
                     /db_xref="CDD:187541"
     CDS             1..381
                     /gene="UXS1"
                     /coded_by="XM_054076627.1:115..1260"
                     /db_xref="GeneID:104056681"
ORIGIN      
        1 mrslpengdq kveskieeav aplrekikdl eksftqkypp vkflsekdrk rilitggagf
       61 vgshltdklm mdghevtvvd nfftgrkrnv ehwighenfe linhdvvepl yievdqiyhl
      121 aspasppnym ynpiktlktn tigtlnmlgl akrvgarlll astsevygdp evhpqnedyw
      181 ghvnpigpra cydegkrvae tmcyaymkqe gvevrvarif ntfgprmhmn dgrvvsnfil
      241 qalqgepltv ygpgtqtraf qyvsdlvngl valmnsnvss pvnlgnpeeh tilefaqlik
      301 klvgsgseiq flseaqddpq krkpdirkak lllgwepvvp leeglnkaih yfrkeleyqa
      361 nnqyipkpkp armkkgrtrh n
//
LOCUS       XP_053932611             312 aa            linear   VRT 09-MAR-2023
DEFINITION  UDP-glucuronic acid decarboxylase 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053932611
VERSION     XP_053932611.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076636.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..312
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..312
                     /product="UDP-glucuronic acid decarboxylase 1 isoform X3"
                     /calculated_mol_wt=35268
     Region          1..284
                     /region_name="UGD_SDR_e"
                     /note="UDP-glucuronate decarboxylase (UGD) and related
                     proteins, extended (e) SDRs; cd05230"
                     /db_xref="CDD:187541"
     Site            order(11..16,35..37,51..55,70,92..94,123,127,150..153,164)
                     /site_type="other"
                     /note="NAD binding site [chemical binding]"
                     /db_xref="CDD:187541"
     Site            order(40..41,76..77,80..81,83..84,137)
                     /site_type="other"
                     /note="putative substrate binding site 2 [chemical
                     binding]"
                     /db_xref="CDD:187541"
     Site            order(57,120,152,163..165,168..169,180..182,187,189,223,
                     249,253)
                     /site_type="other"
                     /note="putative substrate binding site 1 [chemical
                     binding]"
                     /db_xref="CDD:187541"
     Site            order(71,94,123,127)
                     /site_type="active"
                     /db_xref="CDD:187541"
     CDS             1..312
                     /gene="UXS1"
                     /coded_by="XM_054076636.1:154..1092"
                     /db_xref="GeneID:104056681"
ORIGIN      
        1 mmdghevtvv dnfftgrkrn vehwighenf elinhdvvep lyievdqiyh laspasppny
       61 mynpiktlkt ntigtlnmlg lakrvgarll lastsevygd pevhpqnedy wghvnpigpr
      121 acydegkrva etmcyaymkq egvevrvari fntfgprmhm ndgrvvsnfi lqalqgeplt
      181 vygpgtqtra fqyvsdlvng lvalmnsnvs spvnlgnpee htilefaqli kklvgsgsei
      241 qflseaqddp qkrkpdirka klllgwepvv pleeglnkai hyfrkeleyq annqyipkpk
      301 parmkkgrtr hn
//
LOCUS       XP_053932626             364 aa            linear   VRT 09-MAR-2023
DEFINITION  cell division cycle protein 123 homolog isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053932626
VERSION     XP_053932626.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076651.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..364
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..364
                     /product="cell division cycle protein 123 homolog isoform
                     X1"
                     /calculated_mol_wt=41907
     Region          14..313
                     /region_name="D123"
                     /note="pfam07065"
                     /db_xref="CDD:462079"
     CDS             1..364
                     /gene="CDC123"
                     /coded_by="XM_054076651.1:84..1178"
                     /db_xref="GeneID:104066460"
ORIGIN      
        1 mkkeqvancq fsawyplfra vtirsvilpl penvkeylld dgtlvvsgre dppspaqers
       61 ddaeeiqwsd dentatlkap efpeftakvq eaisslggsv fpklnwsapr daywiamnss
      121 lkckalsdif llfkssdfit rdltqpfihc tddspdpsln yelvlrkwce lipgaefrcf
      181 vkenkligis qrdytqyydh iskqheeicr svqeffekhi qykfldedfv fdvyrdskgk
      241 iwlidfnpfg evtdsllftw eeltsgknlk gdqcegeate qdypvfrctn sevtvqpspy
      301 lsyrlpkdfv dlstgedvhk lidflklilf ftghkilsfg mgkriytalf hlvktfcltt
      361 qktv
//
LOCUS       XP_053932636             335 aa            linear   VRT 09-MAR-2023
DEFINITION  cell division cycle protein 123 homolog isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053932636
VERSION     XP_053932636.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076661.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..335
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..335
                     /product="cell division cycle protein 123 homolog isoform
                     X2"
                     /calculated_mol_wt=38663
     Region          14..313
                     /region_name="D123"
                     /note="pfam07065"
                     /db_xref="CDD:462079"
     CDS             1..335
                     /gene="CDC123"
                     /coded_by="XM_054076661.1:84..1091"
                     /db_xref="GeneID:104066460"
ORIGIN      
        1 mkkeqvancq fsawyplfra vtirsvilpl penvkeylld dgtlvvsgre dppspaqers
       61 ddaeeiqwsd dentatlkap efpeftakvq eaisslggsv fpklnwsapr daywiamnss
      121 lkckalsdif llfkssdfit rdltqpfihc tddspdpsln yelvlrkwce lipgaefrcf
      181 vkenkligis qrdytqyydh iskqheeicr svqeffekhi qykfldedfv fdvyrdskgk
      241 iwlidfnpfg evtdsllftw eeltsgknlk gdqcegeate qdypvfrctn sevtvqpspy
      301 lsyrlpkdfv dlstgedvhk lidflklkrn qqddd
//
LOCUS       XP_053932642             316 aa            linear   VRT 09-MAR-2023
DEFINITION  aldo-keto reductase family 1 member B1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053932642
VERSION     XP_053932642.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076667.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..316
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..316
                     /product="aldo-keto reductase family 1 member B1 isoform
                     X1"
                     /calculated_mol_wt=35773
     Region          11..316
                     /region_name="AKR_AKR1B1-19"
                     /note="AKR1B family of aldo-keto reductase (AKR); cd19107"
                     /db_xref="CDD:381333"
     Site            order(19..22,44,48..49,78,80,111..112,114,116,123,
                     160..161,184,210..217,220,229,246,261..266,269,272..273,
                     299..301,304,310..311)
                     /site_type="active"
                     /db_xref="CDD:381333"
     Site            order(44,49,78,111)
                     /site_type="active"
                     /note="catalytic tetrad [active]"
                     /db_xref="CDD:381333"
     CDS             1..316
                     /gene="AKR1B1"
                     /coded_by="XM_054076667.1:289..1239"
                     /db_xref="GeneID:128853263"
ORIGIN      
        1 matyvqlntt akmplvglgt wqspsgkata avmtaidsgy rhfdcayvyq nenevgegiq
       61 qkikegvvkr edlfivsklw ctffdkplvk gackktlaal kldyldlylm hwpcgfkage
      121 emfpkddkgm cipsntdilq tweameelvd aglvkaigis nfnheqieri lnkpglkykp
      181 annqiechpy ltqeklikyc qskgiavtay cplgspdrpw akpedpslld dpkikeiaak
      241 hnktpaqvll rfqiqrnviv ipksvtpqri venfkvfdfe ltkeemgtll sfnrnwrica
      301 msmskahkdy pfhaey
//
LOCUS       XP_053932647             288 aa            linear   VRT 09-MAR-2023
DEFINITION  aldo-keto reductase family 1 member B1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053932647
VERSION     XP_053932647.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076672.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..288
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..288
                     /product="aldo-keto reductase family 1 member B1 isoform
                     X2"
                     /calculated_mol_wt=32455
     Region          11..288
                     /region_name="AKR_SF"
                     /note="Aldo-keto reductase (AKR) superfamily; cl00470"
                     /db_xref="CDD:444925"
     Site            order(44,49,78,111)
                     /site_type="active"
                     /note="catalytic tetrad [active]"
                     /db_xref="CDD:381296"
     CDS             1..288
                     /gene="AKR1B1"
                     /coded_by="XM_054076672.1:287..1153"
                     /db_xref="GeneID:128853263"
ORIGIN      
        1 matyvqlntt akmplvglgt wqspsgkata avmtaidsgy rhfdcayvyq nenevgegiq
       61 qkikegvvkr edlfivsklw ctffdkplvk gackktlaal kldyldlylm hwpcgfkage
      121 emfpkddkgm cipsntdilq tweameelvd aglvkaigis nfnheqieri lnkpglkykp
      181 annqiechpy ltqeklikyc qskgiavtay cplgspdrpw akpedpslld dpkikeiaak
      241 hnktpaqvfd feltkeemgt llsfnrnwri camsmskahk dypfhaey
//
LOCUS       XP_053932655             284 aa            linear   VRT 09-MAR-2023
DEFINITION  aldo-keto reductase family 1 member B1 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053932655
VERSION     XP_053932655.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076680.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..284
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..284
                     /product="aldo-keto reductase family 1 member B1 isoform
                     X3"
                     /calculated_mol_wt=32497
     Region          1..284
                     /region_name="AKR_SF"
                     /note="Aldo-keto reductase (AKR) superfamily; cl00470"
                     /db_xref="CDD:444925"
     Site            order(12,17,46,79,128..129,152,178..184,214,229..232,237,
                     240..241)
                     /site_type="active"
                     /db_xref="CDD:381296"
     Site            order(12,17,46,79)
                     /site_type="active"
                     /note="catalytic tetrad [active]"
                     /db_xref="CDD:381296"
     CDS             1..284
                     /gene="AKR1B1"
                     /coded_by="XM_054076680.1:445..1299"
                     /db_xref="GeneID:128853263"
ORIGIN      
        1 mtaidsgyrh fdcayvyqne nevgegiqqk ikegvvkred lfivsklwct ffdkplvkga
       61 ckktlaalkl dyldlylmhw pcgfkageem fpkddkgmci psntdilqtw eameelvdag
      121 lvkaigisnf nheqieriln kpglkykpan nqiechpylt qeklikycqs kgiavtaycp
      181 lgspdrpwak pedpsllddp kikeiaakhn ktpaqvllrf qiqrnvivip ksvtpqrive
      241 nfkvfdfelt keemgtllsf nrnwricams mskahkdypf haey
//
LOCUS       XP_009565356             472 aa            linear   VRT 09-MAR-2023
DEFINITION  collagenase 3 [Cuculus canorus].
ACCESSION   XP_009565356
VERSION     XP_009565356.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009567061.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009565356.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..472
                     /product="collagenase 3"
                     /calculated_mol_wt=54346
     Region          33..92
                     /region_name="PG_binding_1"
                     /note="Putative peptidoglycan binding domain; pfam01471"
                     /db_xref="CDD:460223"
     Region          113..268
                     /region_name="Peptidase_M10"
                     /note="Matrixin; pfam00413"
                     /db_xref="CDD:425668"
     Region          282..472
                     /region_name="HX"
                     /note="Hemopexin-like repeats.; Hemopexin is a
                     heme-binding protein that transports heme to the liver.
                     Hemopexin-like repeats occur in vitronectin and some
                     matrix metalloproteinases family (matrixins). The HX
                     repeats of some matrixins bind tissue inhibitor of...;
                     cd00094"
                     /db_xref="CDD:238046"
     Site            order(292,294,336,338,384,386,433,435)
                     /site_type="metal-binding"
                     /note="Metal binding sites [ion binding]"
                     /db_xref="CDD:238046"
     CDS             1..472
                     /gene="LOC104064702"
                     /coded_by="XM_009567061.2:39..1457"
                     /db_xref="GeneID:104064702"
ORIGIN      
        1 mtqsrfstaf ffllglsfcl tipipvedsh eftekdlqfa erylrthydl rpnpagimrk
       61 santvasklr emqaffglev tgkldeetye lmqkprcgvp dvgeynffpr klkwsktnlt
      121 yrimnytsdl rraevdrafk kafkvwsdvt plnftrirsg iadimisfgt kehgdfypfd
      181 gpsgllahaf ppgpdyggda hfdddeawsd dsrgynlflv aahefghslg lehsrdpgal
      241 mfpiytytgk tgfvlpdddv qgiqelygag dkdpnpkhpk tpekcdpels ldaitelrge
      301 mlvfkdrffw rlhpqmveae lvllksfwpe lpnkidaaye npikdlvfmf kgkkvwalng
      361 ydivedfpkk iyemgfpkam kridaavhik dtgktlffsg nkywsydeea evmeagyprf
      421 ieeefagvgd rvdavyerng ylyffngplq feysiwskri vrvlhtnslf wc
//
LOCUS       XP_053932680             655 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium/hydrogen exchanger 4 [Cuculus canorus].
ACCESSION   XP_053932680
VERSION     XP_053932680.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076705.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..655
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..655
                     /product="sodium/hydrogen exchanger 4"
                     /calculated_mol_wt=74322
     Region          64..622
                     /region_name="b_cpa1"
                     /note="sodium/hydrogen exchanger 3; TIGR00840"
                     /db_xref="CDD:273294"
     CDS             1..655
                     /gene="SLC9A4"
                     /coded_by="XM_054076705.1:110..2077"
                     /db_xref="GeneID:104056689"
ORIGIN      
        1 mgsttlahan lwncllllsl vccpstayld epnlsesflp ryepdngdav dssqdtrlhv
       61 ftvdydyvqi pyevtlwilf aslakigfhl yhrlpklmpe sciliaigal vgtiifvsdh
      121 ksppvmntsi yflyllppii leegyfmptr pffenfgsil wwsvlgslln sfgiglslyg
      181 icqieafglt dlnllqnllf gsmisavdpa aalvvfeeas vneqlymmif gesllndgit
      241 vvlynifiaf tqmhryeeie sidvfagfar ffvvglggvl fgivfgfvsa lmtrfthnvs
      301 aiepllvfmf sylsylsaet lyisgilamt acavtmkkyv eenvsqnsyt tikyfmkmls
      361 svsetlifmf mgvstvgknh ewnwaficft llfcliwrtl svfalfyisn kfrtypftlk
      421 dqliisysgl rgassfslaf llpvnlfprk nlfitatlvv iyftvfiqgi tigplvryld
      481 vkktnkkesi neeihvrlmd hlkagiedic ghwshyqlrd kfkkfdnkyl kkilirehqp
      541 ksslvslykk meiklaiema esgmqiskss taslqtgsnq rehrlspael esmrdvlahn
      601 lyqvrqrapa ynrhnlpsnt nekqaqeili rrqhslrqsc rkgnslpwgg pvsvm
//
LOCUS       XP_053932692             247 aa            linear   VRT 09-MAR-2023
DEFINITION  trypsin I-P1-like isoform X1 [Cuculus canorus].
ACCESSION   XP_053932692
VERSION     XP_053932692.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076717.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..247
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..247
                     /product="trypsin I-P1-like isoform X1"
                     /calculated_mol_wt=26341
     Region          25..243
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cd00190"
                     /db_xref="CDD:238113"
     Site            25
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(64,108,201)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(195,216,218)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..247
                     /gene="LOC128853265"
                     /coded_by="XM_054076717.1:1..744"
                     /db_xref="GeneID:128853265"
ORIGIN      
        1 mkfflfvtfv gvavafpind dddkivggyt caensvpyqv slnsgyhfcg gslinsqwvl
       61 saahcykyri qvqlgkhnla ltesteqfis sakvirypgy dsatldndim liklaqpaql
      121 travqtvslp tscvdagttc lisgwgntlg ngylypdtlq cleapvlsss ecsnaypgli
      181 tdnmicvgfl eggkdscqgd sggpvvcngq lqgivswgig cakegypgvy tkvcnfvswi
      241 eetmasn
//
LOCUS       XP_053932701             138 aa            linear   VRT 09-MAR-2023
DEFINITION  trypsin I-P1-like isoform X2 [Cuculus canorus].
ACCESSION   XP_053932701
VERSION     XP_053932701.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076726.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..138
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..138
                     /product="trypsin I-P1-like isoform X2"
                     /calculated_mol_wt=14277
     Region          <1..134
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cd00190"
                     /db_xref="CDD:238113"
     Site            order(86,107,109)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..138
                     /gene="LOC128853265"
                     /coded_by="XM_054076726.1:229..645"
                     /db_xref="GeneID:128853265"
ORIGIN      
        1 mliklaqpaq ltravqtvsl ptscvdagtt clisgwgntl gngylypdtl qcleapvlss
       61 secsnaypgl itdnmicvgf leggkdscqg dsggpvvcng qlqgivswgi gcakegypgv
      121 ytkvcnfvsw ieetmasn
//
LOCUS       XP_009558221             357 aa            linear   VRT 09-MAR-2023
DEFINITION  decorin [Cuculus canorus].
ACCESSION   XP_009558221
VERSION     XP_009558221.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009559926.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..357
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..357
                     /product="decorin"
                     /calculated_mol_wt=39509
     Region          52..83
                     /region_name="LRRNT"
                     /note="Leucine rich repeat N-terminal domain; smart00013"
                     /db_xref="CDD:214470"
     Region          60..80
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          81..>307
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          81..104
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          105..128
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          129..149
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          150..173
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          174..199
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          200..220
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          221..244
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          245..268
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          292..311
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     CDS             1..357
                     /gene="DCN"
                     /coded_by="XM_009559926.2:184..1257"
                     /db_xref="GeneID:104058420"
ORIGIN      
        1 mklallfvll lpvclakpfh qqglfdfmle degsadmppt ddpvisgfgp vcpfrcqchl
       61 rvvqcsdlgl ekvpkdlppd ttlldlqnnk iteikegdfk nlknlhalil vnnkiskisp
      121 lafaplkkle rlylsknnlk elpenmpksl qeirahendi sklrkavfng lnqvivlelg
      181 tnpikssgie ngafqgmkrl syiriadtni tsipkglpps ltelhldgnk iskldaesls
      241 gltnlaklgl sfnsissven gslnnvphlr elhlnnnelv rvpgglgehk yiqvvylhnn
      301 kiasvgindf cprgyntkka sysgvslfsn pvqyweiqps afrcihersa vqignyk
//
LOCUS       XP_009561673             441 aa            linear   VRT 09-MAR-2023
DEFINITION  carboxypeptidase A1 [Cuculus canorus].
ACCESSION   XP_009561673
VERSION     XP_009561673.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563378.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561673.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..441
                     /product="carboxypeptidase A1"
                     /calculated_mol_wt=49346
     Region          46..120
                     /region_name="Propep_M14"
                     /note="Carboxypeptidase activation peptide; pfam02244"
                     /db_xref="CDD:460505"
     Region          139..439
                     /region_name="M14_CPA"
                     /note="Peptidase M14 carboxypeptidase subfamily A/B-like;
                     Carboxypeptidase A subgroup; cd03870"
                     /db_xref="CDD:349442"
     Site            order(201,204,259,276..277,328,380,382,402)
                     /site_type="active"
                     /db_xref="CDD:349442"
     Site            order(203..204,259,295,328..330,371,376,378..381,402,411)
                     /site_type="active"
                     /note="inhibitor binding interface [active]"
                     /db_xref="CDD:349442"
     CDS             1..441
                     /gene="LOC104061436"
                     /coded_by="XM_009563378.2:116..1441"
                     /db_xref="GeneID:104061436"
ORIGIN      
        1 mgfkkpwgav gaqdelfqlt mrallllaal vavaagtetf vghqvlriip gndkelqkvq
       61 elqdleelql dfwlaprglg ypvdvrvpfp slqplkahle angisysimi edvqalvdhe
      121 qmemfrssrs rlplststfd yssyhsldei yafmdllvae npnlvsklei ghttenrpiy
      181 vlkfskggtn rpaiwidtgi hsrewvtqas gvwfakkivq dhendselas ildkmdifle
      241 ivtnpdgfaf tqtknrmwrk trskqsgsvc vgvdpnrnwd agfggsgask npcsdtyhgp
      301 yansepevka ivdfvtnhgn ikafisihsy sqlllypygy tttpvpdqee lheisekava
      361 alsslygtky kygsiittiy qasggtidwt ynqgikysft felrdtgryg fllpasqivp
      421 taqetwlalk vimvhtrdhp y
//
LOCUS       XP_009561672             432 aa            linear   VRT 09-MAR-2023
DEFINITION  carboxypeptidase A1 isoform X1 [Cuculus canorus].
ACCESSION   XP_009561672
VERSION     XP_009561672.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563377.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561672.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..432
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..432
                     /product="carboxypeptidase A1 isoform X1"
                     /calculated_mol_wt=48267
     Region          39..113
                     /region_name="Propep_M14"
                     /note="Carboxypeptidase activation peptide; pfam02244"
                     /db_xref="CDD:460505"
     Region          130..430
                     /region_name="M14_CPA"
                     /note="Peptidase M14 carboxypeptidase subfamily A/B-like;
                     Carboxypeptidase A subgroup; cd03870"
                     /db_xref="CDD:349442"
     Site            order(192,195,250,267..268,319,371,373,393)
                     /site_type="active"
                     /db_xref="CDD:349442"
     Site            order(194..195,250,286,319..321,362,367,369..372,393,402)
                     /site_type="active"
                     /note="inhibitor binding interface [active]"
                     /db_xref="CDD:349442"
     CDS             1..432
                     /gene="LOC104061435"
                     /coded_by="XM_009563377.2:149..1447"
                     /db_xref="GeneID:104061435"
ORIGIN      
        1 mpsgaeahlr prtmkillvf aalmaaarse qlfvgdqvlr itasnedqia llralgeqte
       61 lqvdfwrdpt tpghpadlrv pfsslqavki flesnsisys imiedvqell deekrtmmks
      121 rrlerststf dfasyhtide iydwmdtlvd ghpslvskiq igqsyenrpl yvlkfstggs
      181 nrpaiwldtg ihsrewitqa tgiwtankia keygqdpsit aildsmdiff eivtnpdgfa
      241 fthssnrmwr ktrsinagsl cvgvdpnrnw dagfggsgss snpcsetyhg pyahserevk
      301 aivdfilghg nvksvisihs ysqmllypyg yktapapdhq elnelakkav sdlaavygtk
      361 ytygsivdti ykadgttvdw aydngvkysf tfelrdtgry gfllpssqii ptatetwpal
      421 ldimvhvleh py
//
LOCUS       XP_053932748             404 aa            linear   VRT 09-MAR-2023
DEFINITION  carboxypeptidase A1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053932748
VERSION     XP_053932748.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076773.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..404
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..404
                     /product="carboxypeptidase A1 isoform X2"
                     /calculated_mol_wt=45269
     Region          11..85
                     /region_name="Propep_M14"
                     /note="Carboxypeptidase activation peptide; pfam02244"
                     /db_xref="CDD:460505"
     Region          102..402
                     /region_name="M14_CPA"
                     /note="Peptidase M14 carboxypeptidase subfamily A/B-like;
                     Carboxypeptidase A subgroup; cd03870"
                     /db_xref="CDD:349442"
     Site            order(164,167,222,239..240,291,343,345,365)
                     /site_type="active"
                     /db_xref="CDD:349442"
     Site            order(166..167,222,258,291..293,334,339,341..344,365,374)
                     /site_type="active"
                     /note="inhibitor binding interface [active]"
                     /db_xref="CDD:349442"
     CDS             1..404
                     /gene="LOC104061435"
                     /coded_by="XM_054076773.1:124..1338"
                     /db_xref="GeneID:104061435"
ORIGIN      
        1 malppcrdqv lritasnedq iallralgeq telqvdfwrd pttpghpadl rvpfsslqav
       61 kiflesnsis ysimiedvqe lldeekrtmm ksrrlersts tfdfasyhti deiydwmdtl
      121 vdghpslvsk iqigqsyenr plyvlkfstg gsnrpaiwld tgihsrewit qatgiwtank
      181 iakeygqdps itaildsmdi ffeivtnpdg fafthssnrm wrktrsinag slcvgvdpnr
      241 nwdagfggsg sssnpcsety hgpyahsere vkaivdfilg hgnvksvisi hsysqmllyp
      301 ygyktapapd hqelnelakk avsdlaavyg tkytygsivd tiykadgttv dwaydngvky
      361 sftfelrdtg rygfllpssq iiptatetwp alldimvhvl ehpy
//
LOCUS       XP_053932760             227 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM3C [Cuculus canorus].
ACCESSION   XP_053932760
VERSION     XP_053932760.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076785.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..227
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..227
                     /product="protein FAM3C"
                     /calculated_mol_wt=24641
     Region          53..223
                     /region_name="ILEI_FAM3C"
                     /note="Interleukin-like EMT inducer; cd13940"
                     /db_xref="CDD:260114"
     CDS             1..227
                     /gene="FAM3C"
                     /coded_by="XM_054076785.1:183..866"
                     /db_xref="GeneID:104061621"
ORIGIN      
        1 mriagaakfv vvvaiflltf yvisqvfeik mdanlghifa rsaldaaahs tkpprykcgi
       61 skacpekhfa fkmasgaanv vgpkicvedn ilmsgvknnv grginvalvn gktgealdtk
      121 ffdmwggdva pfieflksiq dgtivlmgty ddgatklnee arkliaelgs tsitnlgfrd
      181 nwvfcggkgi ktkspfeqhi knnkdtnkye gwpevvemeg cipqkqd
//
LOCUS       XP_053932771             667 aa            linear   VRT 09-MAR-2023
DEFINITION  TBC1 domain family member 15 [Cuculus canorus].
ACCESSION   XP_053932771
VERSION     XP_053932771.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076796.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..667
                     /product="TBC1 domain family member 15"
                     /calculated_mol_wt=76551
     Region          8..209
                     /region_name="PH_RBD"
                     /note="Rab-binding domain (RBD); pfam12068"
                     /db_xref="CDD:432305"
     Region          324..559
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     CDS             1..667
                     /gene="TBC1D15"
                     /coded_by="XM_054076796.1:195..2198"
                     /db_xref="GeneID:104064038"
ORIGIN      
        1 maappsgkvv yeqegvfihs scgknddqds lisgilrvie kdnevvvdwr plddtldtsn
       61 ilcagkdsss vvewtqtpke kcsrgadrps syeaewdmvt tvsfkkkphs ngdapthang
      121 eskwsflfsl tdlksikqnk egmgwsylvf clkddvklpa lhfhhgdskl likclekhvv
      181 lnespqdkri llvnsqnksl sqsfenlfde psygllqklk kdpytvtmgr fskvtnyifd
      241 sfrlsdpvnq rrppsemadf lndaipglki nqqeepgfev itrialgkqp evsrrepvsa
      301 eewaknmdse grildvdyik rlifkgglch tlrkeawkfl lgyfpwnstk eeranlqkqk
      361 tdeyfrmklq wksvseeqek rnsrlrdyrs liekdvnrtd rtnkfyeged npglillhdi
      421 lmtycmydfd lgyvqgmsdl lspvlyvmen evdafwcfvs ymdqmhqnfe eqmqgmktql
      481 iqlstllrll dsgfcsyles qdsgylyfcf rwllirfkre fsfqdilrlw evmwtdlpcq
      541 nfhlllccai lesekqqimd khygfneilk hinelsmkid veyilckaea ismqmmncke
      601 lpqavseilg iesssitpds dtgedesgav lscpaslyqs lstpviaang tsngsqqmse
      661 rqslapa
//
LOCUS       XP_009569847             310 aa            linear   VRT 09-MAR-2023
DEFINITION  endoplasmic reticulum resident protein 27 [Cuculus canorus].
ACCESSION   XP_009569847
VERSION     XP_009569847.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009571552.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009569847.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..310
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..310
                     /product="endoplasmic reticulum resident protein 27"
                     /calculated_mol_wt=34416
     Region          103..288
                     /region_name="Thioredoxin_6"
                     /note="Thioredoxin-like domain; pfam13848"
                     /db_xref="CDD:463999"
     CDS             1..310
                     /gene="ERP27"
                     /coded_by="XM_009571552.2:471..1403"
                     /db_xref="GeneID:104068648"
ORIGIN      
        1 mlpshhpwsg cgilqqltrl mlrrgpeqgd vakrrqaatm gtsifpclfl illtrgspaq
       61 caedggsasd gtagtaekpv llnsitdada figgaevvvi gffqepesse asefrlaagr
      121 ipevpfglss ssavlshygv aantvtlfrr vdndrmdldm nskdtdaeki trfvrmnelr
      181 lvteynpmta igvmqsslql hlllitdkms pkhpermlry qaaaeqfkgk ilfilvdsnl
      241 ksnehtvsyf klkksqlpal aifhmpddeq dvltldeisv ervqdfcnrf lqrmqkkede
      301 peekalneel
//
LOCUS       XP_053932789             200 aa            linear   VRT 09-MAR-2023
DEFINITION  rho GDP-dissociation inhibitor 2 [Cuculus canorus].
ACCESSION   XP_053932789
VERSION     XP_053932789.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076814.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..200
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..200
                     /product="rho GDP-dissociation inhibitor 2"
                     /calculated_mol_wt=22811
     Region          8..197
                     /region_name="Rho_GDI"
                     /note="RHO protein GDP dissociation inhibitor; pfam02115"
                     /db_xref="CDD:460449"
     CDS             1..200
                     /gene="ARHGDIB"
                     /coded_by="XM_054076814.1:301..903"
                     /db_xref="GeneID:104068649"
ORIGIN      
        1 mtektqephv eedddeldgk lnykpppqkt lqelqeldkd desltkykks llgdgpvvvd
       61 ptapnvvvtr ltlvcdsapg pitmdltgdl ealkketfvl kegveyrvki hfrvnrdivs
      121 glkyvqhtyr tgvkvdkatf mvgsygprpe eyefltpiee apkgmlargt yhnksfftdd
      181 dkhdhltwew nlsikkewte
//
LOCUS       XP_053932796             200 aa            linear   VRT 09-MAR-2023
DEFINITION  rho GDP-dissociation inhibitor 2 [Cuculus canorus].
ACCESSION   XP_053932796
VERSION     XP_053932796.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076821.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..200
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..200
                     /product="rho GDP-dissociation inhibitor 2"
                     /calculated_mol_wt=22811
     Region          8..197
                     /region_name="Rho_GDI"
                     /note="RHO protein GDP dissociation inhibitor; pfam02115"
                     /db_xref="CDD:460449"
     CDS             1..200
                     /gene="ARHGDIB"
                     /coded_by="XM_054076821.1:250..852"
                     /db_xref="GeneID:104068649"
ORIGIN      
        1 mtektqephv eedddeldgk lnykpppqkt lqelqeldkd desltkykks llgdgpvvvd
       61 ptapnvvvtr ltlvcdsapg pitmdltgdl ealkketfvl kegveyrvki hfrvnrdivs
      121 glkyvqhtyr tgvkvdkatf mvgsygprpe eyefltpiee apkgmlargt yhnksfftdd
      181 dkhdhltwew nlsikkewte
//
LOCUS       XP_009569851             602 aa            linear   VRT 09-MAR-2023
DEFINITION  vesicular glutamate transporter 3 [Cuculus canorus].
ACCESSION   XP_009569851
VERSION     XP_009569851.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009571556.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009569851.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..602
                     /product="vesicular glutamate transporter 3"
                     /calculated_mol_wt=66952
     Region          94..517
                     /region_name="MFS_SLC17A6_7_8_VGluT"
                     /note="Solute carrier family 17 members 6, 7, and 8 (also
                     called Vesicular glutamate transporters) of the Major
                     Facilitator Superfamily of transporters; cd17382"
                     /db_xref="CDD:340940"
     Site            order(104..105,108..109,112,159,211..212,214..216,219,239,
                     242..243,246,338,341..342,345..347,350,378,382,440..441,
                     445,449,465,468..469,472..473,476)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:340940"
     CDS             1..602
                     /gene="SLC17A8"
                     /coded_by="XM_009571556.2:365..2173"
                     /db_xref="GeneID:104068652"
ORIGIN      
        1 mvvnirdllk kkdkmpfkgf gslkerffnp gkeelkntvs dslgnlrrki dgtnveeedh
       61 lelteegrpv qastrklapc dcyccglpkr yiiaimsglg fcisfgircn lgvaivemvn
      121 nntvyvngkp elqkaqfnwd petvglihgs ffwgyivtqi pggfisnkla anrvfgaaif
      181 ltstlnmfip saarvhygcv mfvrilqglv egvtypachg mwskwapple rsrlattsfc
      241 gsyagavvam plagvlvqyi gwssvfyiyg mfgivwymfw llhayespaa hptitneeki
      301 yietsigega slastnkfst pwkrfftsmp vyaiivanfc rswtfyllli sqpayfeevf
      361 gfaiskvgll savphmvmti ivpiggqlad flrsrkiltt ttvrkvmncg gfgmeatlll
      421 vvgyshtkgv aisflvlavg fsgfaisgfn vnhldiapry asilmgisng vgtlsgmvcp
      481 livgamtkhk treewqnvfl iaalvhysgv ifyalfasge kqewadpenl neekcgiidh
      541 delaeetemn netfvsskkm ygatsqnsev qrrewrkqkq vtqdmeekts yhyengnfqd
      601 ls
//
LOCUS       XP_053932818            1628 aa            linear   VRT 09-MAR-2023
DEFINITION  cortactin-binding protein 2 [Cuculus canorus].
ACCESSION   XP_053932818
VERSION     XP_053932818.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076843.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1628
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1628
                     /product="cortactin-binding protein 2"
                     /calculated_mol_wt=177562
     Region          29..174
                     /region_name="CortBP2"
                     /note="Cortactin-binding protein-2; pfam09727"
                     /db_xref="CDD:462860"
     Region          <113..388
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          <364..724
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <707..906
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          707..736
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          738..769
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(771,773,777..778,781..783,785..786,790,793,802,804,
                     806,810..811,814..816,818..819,823,826,835,837,839,
                     843..844,847..849,851..852,856,859)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          771..802
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          804..835
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          837..861
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          907..931
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          <1090..1363
                     /region_name="PRK11331"
                     /note="5-methylcytosine-specific restriction enzyme
                     subunit McrB; Provisional"
                     /db_xref="CDD:183088"
     CDS             1..1628
                     /gene="CTTNBP2"
                     /coded_by="XM_054076843.1:195..5081"
                     /db_xref="GeneID:104064337"
ORIGIN      
        1 matqgasgep aaaasedsaa tkrefdmdnl skpelrmlls vmegeleard lviealrarr
       61 kevfiqeryg rfnlsdpfla lqrdfeagag dkekkpicmn plsileavma hcrkmqerms
      121 aqlaaaenrq kklemeksql qslelehkkl sarleeergk nkhvvlmlvk eckqlsgriv
      181 eesqkleevm skfeeekkka teleeslaae qqrstqmeaq mekqlsefdt ereqlraklh
      241 reeahtsdlk eerdkmikmi eqlkkenesk anlslknkdn nkdrnlvsvs vetdepssrt
      301 vacqtdtvmm dsstenvkkl pltvsvkpst vnplvsgntk mnvctnaafa kpmidrqsss
      361 selvppttpv ltqnqnrvee ngpstesspd lpsstspfss stslctpaap tataqnsslt
      421 ssmhslhsps antaghpgln priqaarfrf qanandqdqn gnttqsppsr dvsptsrdnl
      481 vakqvarntv tqvlsrftsp qsstpsrpgt shsmevgtyp pvgrtslktp svsridrgnp
      541 ppippkkpgl sqtpspphpq lkvlmdssrs psaktdsktm tsllssspqg irvineeiis
      601 ksspqlppkp aidlsvapag caipaiassq vgawpshfpg lnqpacsens fvipttiacs
      661 ssinpvsass crpcdsdsll vtasgwsssl tplltsggpv plggrptllh qaaaqgnvtl
      721 lsmllneegl dinyscedgy salysaatng htdcvrlllt aeaqvdaadk ngftplcsav
      781 aqghvkcael limyqadinh aaergqtply lackngnnnc ikllleggad rtvktsdgws
      841 pihaavdsgn vdclkllmyy gkpnngnsft gaepnldyfd lekrednyst slkpvisadl
      901 lnhadkegwt aahiaaskgf kncleilcsh ggleaerkdk cnrtlhdvat ddckhllenl
      961 nalsvpvris vsgiepahcg aeefdtenti cvlnirkqts wddfskavsq avtnhfqaia
     1021 sdgwksledl sfnsaaesni glgassilsv klgnvswstg qifsqppwdf lknnraehit
     1081 vflfgpqegc lnsvtyasmi hlqtlqnylr lveqyrnvif hgpegslqdy iayqiaacik
     1141 qkqvaagstc eiikvevnag fskeqlaelf issaclvpvk qppvskttiv ilenlerasl
     1201 sellgdflap letrssenpc tiqradgasg afyfhencfl lgtiakchlh gsdllvqqhf
     1261 rwvqlrwdae pmrgllqrfl rrkvinkfrg kvpppcdpvc kiidwilavw hqlnsclsrl
     1321 gapealmgpk hffscpvvpg hgqvtvkwms klwnaviapr vqeailskas vktpsvpgqa
     1381 takknpsqgq qavvkaalsi llnkavlhgc plprteldny iadfkggnfp lsvvasyknc
     1441 skkrgenasw rkvntsprkk sghlssqswn kqetntegik sktmvqpnck kraslatkss
     1501 eknqlrtlnl eqrlslgsdd evdlvqelqs mcssksepdi skiadskdel lmfnnsqnsp
     1561 vfsargtnps kataqkdgmr plsssqsves snsksktelg vsrvksflpv prskvtqpsq
     1621 ntkkkqqq
//
LOCUS       XP_053932829             247 aa            linear   VRT 09-MAR-2023
DEFINITION  trypsin I-P1-like [Cuculus canorus].
ACCESSION   XP_053932829
VERSION     XP_053932829.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076854.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..247
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..247
                     /product="trypsin I-P1-like"
                     /calculated_mol_wt=26310
     Region          25..243
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cd00190"
                     /db_xref="CDD:238113"
     Site            25
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(64,108,201)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(195,216,218)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..247
                     /gene="LOC128853278"
                     /coded_by="XM_054076854.1:1..744"
                     /db_xref="GeneID:128853278"
ORIGIN      
        1 mkfflfvtfv gvavafpind dddkivggyt caansvpyqv slnsgyhfcg gslinsqwvl
       61 saahcykyri rvqlgkhnla ltesteqfis sakvirypgy dsatldndim liklaqpaql
      121 travqtvslp tscvdagttc lisgwgntlg ngylypdtlq cleapvlsss ecsnaypgli
      181 tdnmicvgfl eggkdscqgd sggpvvcngq lqgivswgig cakkgypgvy tkvcnfvswi
      241 eetmasn
//
LOCUS       XP_009555293              68 aa            linear   VRT 09-MAR-2023
DEFINITION  cytochrome c oxidase copper chaperone [Cuculus canorus].
ACCESSION   XP_009555293
VERSION     XP_009555293.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556998.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555293.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..68
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..68
                     /product="cytochrome c oxidase copper chaperone"
                     /calculated_mol_wt=7146
     Region          23..68
                     /region_name="COX17"
                     /note="Cytochrome C oxidase copper chaperone (COX17);
                     pfam05051"
                     /db_xref="CDD:428283"
     CDS             1..68
                     /gene="LOC104055815"
                     /coded_by="XM_009556998.2:63..269"
                     /db_xref="GeneID:104055815"
ORIGIN      
        1 mstvaaascd akvageareg ekkplkpcca cpetkkarda ciiekgeenc ghlieahkec
       61 mralgfki
//
LOCUS       XP_053932841             580 aa            linear   VRT 09-MAR-2023
DEFINITION  sphingomyelin phosphodiesterase [Cuculus canorus].
ACCESSION   XP_053932841
VERSION     XP_053932841.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076866.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..580
                     /product="sphingomyelin phosphodiesterase"
                     /calculated_mol_wt=63651
     Region          161..450
                     /region_name="MPP_ASMase"
                     /note="acid sphingomyelinase and related proteins,
                     metallophosphatase domain; cd00842"
                     /db_xref="CDD:277321"
     Site            order(165,167,232,272..273,379,411,413)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:277321"
     Site            order(165,167,232,272,379,411,413)
                     /site_type="other"
                     /note="putative metal binding site [ion binding]"
                     /db_xref="CDD:277321"
     Region          428..>526
                     /region_name="ASMase_C"
                     /note="Acid sphingomyelin phosphodiesterase C-terminal
                     region; pfam19272"
                     /db_xref="CDD:466022"
     CDS             1..580
                     /gene="SMPD1"
                     /coded_by="XM_054076866.1:36..1778"
                     /db_xref="GeneID:128853283"
ORIGIN      
        1 maargrsral laalwlplcv svwprvppap appgpeppql rgwrnvscpa chalfgalgl
       61 alqlepnvar vgrvasrlcq dlrlarpaic qqavqlfqrd vvsawtrsvl rpgeacglll
      121 gdacgrwdiy adwnvslpdv pkppvrppqp pppaaptarv lfltdihwdr ryaagadvac
      181 pdplccrgna tagaakagfw gsygkcdlpl rtvaslldqv pppihavywt gdipahnvwe
      241 qsrrdqleal gtvtellrrr lgrvpvfpav gnheatpvna fpppfvtgnq saswlydama
      301 eawrqwlppg alatlrtggf ytapvwpglr lvslnmnfcs ranfwllvns sdpggqlrwl
      361 ggvlaraear gekvhiighi ppghclraws wnyyrivnrf egtiaaqffg hthvdefeif
      421 ydeetlsrpl svafvapsvt tyidlnpgfr vytvagsyeg ssasvldhet filnlteana
      481 apalrprwlr lygareaygm rgafpedweq lrrrlrdddg lfqrfwflrh kghppaapca
      541 dacrravlca lrtaraadpr lcpatpspdr gngagtaalc
//
LOCUS       XP_053932849            1661 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053932849
VERSION     XP_053932849.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076874.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1661
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1661
                     /product="roundabout homolog 1 isoform X1"
                     /calculated_mol_wt=181925
     Region          75..173
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          75..79
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(79,82,91,93,95,97,137..138)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          82..87
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          91..99
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          105..110
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          113..115
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          126..129
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          132..138
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          150..158
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          161..173
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          180..265
                     /region_name="IgI_2_Robo"
                     /note="Second immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05724"
                     /db_xref="CDD:409389"
     Region          180..183
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409389"
     Region          185..189
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409389"
     Region          193..200
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          208..213
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          215..218
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409389"
     Region          224..228
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409389"
     Region          230..236
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          243..251
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          254..265
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          272..354
                     /region_name="IgI_3_Robo"
                     /note="Third immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05725"
                     /db_xref="CDD:409390"
     Region          272..275
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409390"
     Region          277..281
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409390"
     Region          284..293
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          299..304
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          307..310
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409390"
     Region          313..318
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409390"
     Region          319..326
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          333..341
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          344..354
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          359..456
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          359..363
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          365..369
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          375..383
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          386..393
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          395..398
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          411..416
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          418..425
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          431..440
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          432..889
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          442..453
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          463..549
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          463..466
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          470..473
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          479..486
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          492..497
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          499..501
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          508..512
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          515..520
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          528..536
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          539..549
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          568..654
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(568,633,648)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(649..650,652..653)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1661
                     /gene="ROBO1"
                     /coded_by="XM_054076874.1:67..5052"
                     /db_xref="GeneID:104055995"
ORIGIN      
        1 mavlslllll glvdittaad itprikagsr wrgeknhsdd lergndsgtp lptsdngdns
       61 lgytgsrlrq edfppriveh psdlivskge patlnckaeg rptptiewyk ggervetdkd
      121 dprshrmllp sgslfflriv hgrksrpdeg vyvcvarnyl geavshnasl evailrddfr
      181 qnpsdvmvav gepavmecqp prghpeptis wkkdgtpldd kderitirgg klmitytrkn
      241 dagkyvcvgt nmvgeresev aeltvlerps fvkrpsnlav tvddsaefkc eargdpvptv
      301 rwrkddgelp karyeirddh tlkirkvmag dmgsytcvae nmvgkaeasa tltvqeppqf
      361 vvkprdqvaa lgrtvtfqce atgnpqpaif wrregsqnll fsyqppqsss rfsvsqtgdl
      421 titnvqrsdv gyyicqtlnv agsiitkayl evtdviadrp ppvirqgpvn qtvavdgtlv
      481 lncvatgtlm ptilwkkdgi listqdsrik qletgalqir yaklgdtgry tciastpsge
      541 atwsayievq efgvpvqppr ptdpnlipsa pskpevtdvs rntvtlswqp nlnsgatpts
      601 yiieafshas gsswqtvaen vktesfavkg lkpnaiylfl vraanaygls dpsqisdpvk
      661 tqdvpptsqg vdhkqvqrel gdvvlhlhnp tilssssiev hwtvdqqsqy iqgykilyrp
      721 mpasygesew lifevrtptk nsviipelkk gvnyeikarp ffnefqgads evkfaktlee
      781 apsappqsvs vtkndgngta ivvtwqpppe dnqngmvqey kvwclgnesr yhinktvdgs
      841 tfsvvipslv pgirysveva astgagpgvk sdpqfiqlds hgnpvssedq vslaqqisdv
      901 vkqpafiagi gaacwiilmv fsiwlyrhrk krngltstya girkvpsftf tptvtyqrgg
      961 eavssggrpg llnitepatq pwladtwpnt gnnhndcsin cctsgngnsd snlttysrpa
     1021 dcianynnql dnkqtnlmlp estvygdvdl snkinemktf nspnlkdgrf vsqpgqptpy
     1081 attqliqsni snnvnngsgd tnekhwkpsv qqkqevapiq ynimeqnkln kdyrvndnva
     1141 ptipynqsyd qntggsynss drgsstsgsq ghkkgartpk apkqagmnwa dllppppahp
     1201 pphsnsedys lsvdesydqe ipcpvpparm ylqqdeleee eedergptpp vrgaasspaa
     1261 vsyshqstat ltpspqeelq pmlqdcqedl ghiqhqperr rqtvsppppp rpispphtyg
     1321 yisgplvsdm dtdapeeeed eadvevakmq nrrlllrgle qtpassvgdl essvtgsmin
     1381 gwgsaseedn issgrssvss sdgsfftdad faqavaaaae yaglkvarrq mhdaaggrrh
     1441 fhashcprpt spvstdsnms avviqkvrpa kkqkhqpghl rrevytddlp pppvpppaik
     1501 sptaqsksqv evrpvmlpkl asieartdrs aerkatsykg rdgvdgrqhs dvrtnsgerr
     1561 esqeqqndgk lrgnkapkre gtpakthllq edilpysrpt fptsnnprdp sssssmssrg
     1621 sgsrqradqa niarrnvaem qvlgayvqge eeeeemeete s
//
LOCUS       XP_053932856            1654 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053932856
VERSION     XP_053932856.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076881.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1654
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1654
                     /product="roundabout homolog 1 isoform X2"
                     /calculated_mol_wt=181407
     Region          68..166
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          68..72
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(72,75,84,86,88,90,130..131)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          75..80
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          84..92
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          98..103
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          106..108
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          119..122
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          125..131
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          143..151
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          154..166
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          173..258
                     /region_name="IgI_2_Robo"
                     /note="Second immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05724"
                     /db_xref="CDD:409389"
     Region          173..176
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409389"
     Region          178..182
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409389"
     Region          186..193
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          201..206
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          208..211
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409389"
     Region          217..221
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409389"
     Region          223..229
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          236..244
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          247..258
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          265..347
                     /region_name="IgI_3_Robo"
                     /note="Third immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05725"
                     /db_xref="CDD:409390"
     Region          265..268
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409390"
     Region          270..274
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409390"
     Region          277..286
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          292..297
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          300..303
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409390"
     Region          306..311
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409390"
     Region          312..319
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          326..334
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          337..347
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          352..449
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          352..356
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          358..362
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          368..376
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          379..386
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          388..391
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          404..409
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          411..418
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          424..433
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          425..882
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          435..446
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          456..542
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          456..459
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          463..466
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          472..479
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          485..490
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          492..494
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          501..505
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          508..513
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          521..529
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          532..542
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          561..647
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(561,626,641)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(642..643,645..646)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1654
                     /gene="ROBO1"
                     /coded_by="XM_054076881.1:28..4992"
                     /db_xref="GeneID:104055995"
ORIGIN      
        1 mkwkhypflv iaavfslsrc hqllgqlipd sddlergnds gtplptsdng dnslgytgsr
       61 lrqedfppri vehpsdlivs kgepatlnck aegrptptie wykggervet dkddprshrm
      121 llpsgslffl rivhgrksrp degvyvcvar nylgeavshn aslevailrd dfrqnpsdvm
      181 vavgepavme cqpprghpep tiswkkdgtp lddkderiti rggklmityt rkndagkyvc
      241 vgtnmvgere sevaeltvle rpsfvkrpsn lavtvddsae fkceargdpv ptvrwrkddg
      301 elpkaryeir ddhtlkirkv magdmgsytc vaenmvgkae asatltvqep pqfvvkprdq
      361 vaalgrtvtf qceatgnpqp aifwrregsq nllfsyqppq sssrfsvsqt gdltitnvqr
      421 sdvgyyicqt lnvagsiitk aylevtdvia drpppvirqg pvnqtvavdg tlvlncvatg
      481 tlmptilwkk dgilistqds rikqletgal qiryaklgdt grytciastp sgeatwsayi
      541 evqefgvpvq pprptdpnli psapskpevt dvsrntvtls wqpnlnsgat ptsyiieafs
      601 hasgsswqtv aenvktesfa vkglkpnaiy lflvraanay glsdpsqisd pvktqdvppt
      661 sqgvdhkqvq relgdvvlhl hnptilssss ievhwtvdqq sqyiqgykil yrpmpasyge
      721 sewlifevrt ptknsviipe lkkgvnyeik arpffnefqg adsevkfakt leeapsappq
      781 svsvtkndgn gtaivvtwqp ppednqngmv qeykvwclgn esryhinktv dgstfsvvip
      841 slvpgirysv evaastgagp gvksdpqfiq ldshgnpvss edqvslaqqi sdvvkqpafi
      901 agigaacwii lmvfsiwlyr hrkkrnglts tyagirkvps ftftptvtyq rggeavssgg
      961 rpgllnitep atqpwladtw pntgnnhndc sincctsgng nsdsnlttys rpadcianyn
     1021 nqldnkqtnl mlpestvygd vdlsnkinem ktfnspnlkd grfvsqpgqp tpyattqliq
     1081 snisnnvnng sgdtnekhwk psvqqkqeva piqynimeqn klnkdyrvnd nvaptipynq
     1141 sydqntggsy nssdrgssts gsqghkkgar tpkapkqagm nwadllpppp ahppphsnse
     1201 dyslsvdesy dqeipcpvpp armylqqdel eeeeedergp tppvrgaass paavsyshqs
     1261 tatltpspqe elqpmlqdcq edlghiqhqp errrqtvspp ppprpispph tygyisgplv
     1321 sdmdtdapee eedeadveva kmqnrrlllr gleqtpassv gdlessvtgs mingwgsase
     1381 ednissgrss vsssdgsfft dadfaqavaa aaeyaglkva rrqmhdaagg rrhfhashcp
     1441 rptspvstds nmsavviqkv rpakkqkhqp ghlrrevytd dlppppvppp aiksptaqsk
     1501 sqvevrpvml pklasieart drsaerkats ykgrdgvdgr qhsdvrtnsg erresqeqqn
     1561 dgklrgnkap kregtpakth llqedilpys rptfptsnnp rdpsssssms srgsgsrqra
     1621 dqaniarrnv aemqvlgayv qgeeeeeeme etes
//
LOCUS       XP_053932863            1652 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053932863
VERSION     XP_053932863.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076888.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1652
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1652
                     /product="roundabout homolog 1 isoform X3"
                     /calculated_mol_wt=180947
     Region          75..173
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          75..79
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(79,82,91,93,95,97,137..138)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          82..87
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          91..99
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          105..110
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          113..115
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          126..129
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          132..138
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          150..158
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          161..173
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          180..265
                     /region_name="IgI_2_Robo"
                     /note="Second immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05724"
                     /db_xref="CDD:409389"
     Region          180..183
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409389"
     Region          185..189
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409389"
     Region          193..200
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          208..213
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          215..218
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409389"
     Region          224..228
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409389"
     Region          230..236
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          243..251
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          254..265
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          272..354
                     /region_name="IgI_3_Robo"
                     /note="Third immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05725"
                     /db_xref="CDD:409390"
     Region          272..275
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409390"
     Region          277..281
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409390"
     Region          284..293
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          299..304
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          307..310
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409390"
     Region          313..318
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409390"
     Region          319..326
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          333..341
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          344..354
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          359..456
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          359..363
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          365..369
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          375..383
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          386..393
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          395..398
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          411..416
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          418..425
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          431..440
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          432..889
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          442..453
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          463..549
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          463..466
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          470..473
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          479..486
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          492..497
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          499..501
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          508..512
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          515..520
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          528..536
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          539..549
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          568..654
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(568,633,648)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(649..650,652..653)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1652
                     /gene="ROBO1"
                     /coded_by="XM_054076888.1:68..5026"
                     /db_xref="GeneID:104055995"
ORIGIN      
        1 mavlslllll glvdittaad itprikagsr wrgeknhsdd lergndsgtp lptsdngdns
       61 lgytgsrlrq edfppriveh psdlivskge patlnckaeg rptptiewyk ggervetdkd
      121 dprshrmllp sgslfflriv hgrksrpdeg vyvcvarnyl geavshnasl evailrddfr
      181 qnpsdvmvav gepavmecqp prghpeptis wkkdgtpldd kderitirgg klmitytrkn
      241 dagkyvcvgt nmvgeresev aeltvlerps fvkrpsnlav tvddsaefkc eargdpvptv
      301 rwrkddgelp karyeirddh tlkirkvmag dmgsytcvae nmvgkaeasa tltvqeppqf
      361 vvkprdqvaa lgrtvtfqce atgnpqpaif wrregsqnll fsyqppqsss rfsvsqtgdl
      421 titnvqrsdv gyyicqtlnv agsiitkayl evtdviadrp ppvirqgpvn qtvavdgtlv
      481 lncvatgtlm ptilwkkdgi listqdsrik qletgalqir yaklgdtgry tciastpsge
      541 atwsayievq efgvpvqppr ptdpnlipsa pskpevtdvs rntvtlswqp nlnsgatpts
      601 yiieafshas gsswqtvaen vktesfavkg lkpnaiylfl vraanaygls dpsqisdpvk
      661 tqdvpptsqg vdhkqvqrel gdvvlhlhnp tilssssiev hwtvdqqsqy iqgykilyrp
      721 mpasygesew lifevrtptk nsviipelkk gvnyeikarp ffnefqgads evkfaktlee
      781 apsappqsvs vtkndgngta ivvtwqpppe dnqngmvqey kvwclgnesr yhinktvdgs
      841 tfsvvipslv pgirysveva astgagpgvk sdpqfiqlds hgnpvssedq vslaqqisdv
      901 vkqpafiagi gaacwiilmv fsiwlyrhrk krngltstya girkvtyqrg geavssggrp
      961 gllnitepat qpwladtwpn tgnnhndcsi ncctsgngns dsnlttysrp adcianynnq
     1021 ldnkqtnlml pestvygdvd lsnkinemkt fnspnlkdgr fvsqpgqptp yattqliqsn
     1081 isnnvnngsg dtnekhwkps vqqkqevapi qynimeqnkl nkdyrvndnv aptipynqsy
     1141 dqntggsyns sdrgsstsgs qghkkgartp kapkqagmnw adllppppah ppphsnsedy
     1201 slsvdesydq eipcpvppar mylqqdelee eeedergptp pvrgaasspa avsyshqsta
     1261 tltpspqeel qpmlqdcqed lghiqhqper rrqtvspppp prpispphty gyisgplvsd
     1321 mdtdapeeee deadvevakm qnrrlllrgl eqtpassvgd lessvtgsmi ngwgsaseed
     1381 nissgrssvs ssdgsfftda dfaqavaaaa eyaglkvarr qmhdaaggrr hfhashcprp
     1441 tspvstdsnm savviqkvrp akkqkhqpgh lrrevytddl ppppvpppai ksptaqsksq
     1501 vevrpvmlpk lasieartdr saerkatsyk grdgvdgrqh sdvrtnsger resqeqqndg
     1561 klrgnkapkr egtpakthll qedilpysrp tfptsnnprd psssssmssr gsgsrqradq
     1621 aniarrnvae mqvlgayvqg eeeeeemeet es
//
LOCUS       XP_053932869            1648 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053932869
VERSION     XP_053932869.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076894.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1648
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1648
                     /product="roundabout homolog 1 isoform X4"
                     /calculated_mol_wt=180528
     Region          75..173
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          75..79
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(79,82,91,93,95,97,137..138)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          82..87
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          91..99
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          105..110
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          113..115
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          126..129
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          132..138
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          150..158
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          161..173
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          180..265
                     /region_name="IgI_2_Robo"
                     /note="Second immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05724"
                     /db_xref="CDD:409389"
     Region          180..183
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409389"
     Region          185..189
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409389"
     Region          193..200
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          208..213
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          215..218
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409389"
     Region          224..228
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409389"
     Region          230..236
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          243..251
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          254..265
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          272..354
                     /region_name="IgI_3_Robo"
                     /note="Third immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05725"
                     /db_xref="CDD:409390"
     Region          272..275
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409390"
     Region          277..281
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409390"
     Region          284..293
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          299..304
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          307..310
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409390"
     Region          313..318
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409390"
     Region          319..326
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          333..341
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          344..354
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          359..456
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          359..363
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          365..369
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          375..383
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          386..393
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          395..398
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          411..416
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          418..425
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          431..440
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          432..889
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          442..453
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          463..549
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          463..466
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          470..473
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          479..486
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          492..497
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          499..501
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          508..512
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          515..520
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          528..536
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          539..549
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          568..654
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(568,633,648)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(649..650,652..653)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1648
                     /gene="ROBO1"
                     /coded_by="XM_054076894.1:68..5014"
                     /db_xref="GeneID:104055995"
ORIGIN      
        1 mavlslllll glvdittaad itprikagsr wrgeknhsdd lergndsgtp lptsdngdns
       61 lgytgsrlrq edfppriveh psdlivskge patlnckaeg rptptiewyk ggervetdkd
      121 dprshrmllp sgslfflriv hgrksrpdeg vyvcvarnyl geavshnasl evailrddfr
      181 qnpsdvmvav gepavmecqp prghpeptis wkkdgtpldd kderitirgg klmitytrkn
      241 dagkyvcvgt nmvgeresev aeltvlerps fvkrpsnlav tvddsaefkc eargdpvptv
      301 rwrkddgelp karyeirddh tlkirkvmag dmgsytcvae nmvgkaeasa tltvqeppqf
      361 vvkprdqvaa lgrtvtfqce atgnpqpaif wrregsqnll fsyqppqsss rfsvsqtgdl
      421 titnvqrsdv gyyicqtlnv agsiitkayl evtdviadrp ppvirqgpvn qtvavdgtlv
      481 lncvatgtlm ptilwkkdgi listqdsrik qletgalqir yaklgdtgry tciastpsge
      541 atwsayievq efgvpvqppr ptdpnlipsa pskpevtdvs rntvtlswqp nlnsgatpts
      601 yiieafshas gsswqtvaen vktesfavkg lkpnaiylfl vraanaygls dpsqisdpvk
      661 tqdvpptsqg vdhkqvqrel gdvvlhlhnp tilssssiev hwtvdqqsqy iqgykilyrp
      721 mpasygesew lifevrtptk nsviipelkk gvnyeikarp ffnefqgads evkfaktlee
      781 apsappqsvs vtkndgngta ivvtwqpppe dnqngmvqey kvwclgnesr yhinktvdgs
      841 tfsvvipslv pgirysveva astgagpgvk sdpqfiqlds hgnpvssedq vslaqqisdv
      901 vkqpafiagi gaacwiilmv fsiwlyrhrk krngltstya girkvpsftf tptvtyqrgg
      961 eavssggrpg llnitepatq pwladtwpnt gnnhndcsin cctsgngnsd snlttysrpa
     1021 dcianynnql dnkqtnlmlp estvygdvdl snkinemktf nspnlkdgrf vsqpgqptpy
     1081 attqliqsni snnvnngsgd tnekhwkpsv qqkqevapiq ynimeqnkln kdyrvndnva
     1141 ptipynqsyd qntggsynss drgsstsgsq ghkkgartpk apkqagmnwa dllppppahp
     1201 pphsnsedys lsvdermylq qdeleeeeed ergptppvrg aasspaavsy shqstatltp
     1261 spqeelqpml qdcqedlghi qhqperrrqt vsppppprpi spphtygyis gplvsdmdtd
     1321 apeeeedead vevakmqnrr lllrgleqtp assvgdless vtgsmingwg saseedniss
     1381 grssvsssdg sfftdadfaq avaaaaeyag lkvarrqmhd aaggrrhfha shcprptspv
     1441 stdsnmsavv iqkvrpakkq khqpghlrre vytddlpppp vpppaikspt aqsksqvevr
     1501 pvmlpklasi eartdrsaer katsykgrdg vdgrqhsdvr tnsgerresq eqqndgklrg
     1561 nkapkregtp akthllqedi lpysrptfpt snnprdpsss ssmssrgsgs rqradqania
     1621 rrnvaemqvl gayvqgeeee eemeetes
//
LOCUS       XP_053932877            1636 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 1 isoform X5 [Cuculus canorus].
ACCESSION   XP_053932877
VERSION     XP_053932877.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076902.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1636
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1636
                     /product="roundabout homolog 1 isoform X5"
                     /calculated_mol_wt=179374
     Region          50..148
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          50..54
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(54,57,66,68,70,72,112..113)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          57..62
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          66..74
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          80..85
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          88..90
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          101..104
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          107..113
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          125..133
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          136..148
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          155..240
                     /region_name="IgI_2_Robo"
                     /note="Second immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05724"
                     /db_xref="CDD:409389"
     Region          155..158
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409389"
     Region          160..164
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409389"
     Region          168..175
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          183..188
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          190..193
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409389"
     Region          199..203
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409389"
     Region          205..211
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          218..226
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          229..240
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          247..329
                     /region_name="IgI_3_Robo"
                     /note="Third immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05725"
                     /db_xref="CDD:409390"
     Region          247..250
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409390"
     Region          252..256
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409390"
     Region          259..268
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          274..279
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          282..285
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409390"
     Region          288..293
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409390"
     Region          294..301
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          308..316
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          319..329
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          334..431
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          334..338
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          340..344
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          350..358
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          361..368
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          370..373
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          386..391
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          393..400
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          406..415
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          407..864
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          417..428
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          438..524
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          438..441
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          445..448
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          454..461
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          467..472
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          474..476
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          483..487
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          490..495
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          503..511
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          514..524
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          543..629
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(543,608,623)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(624..625,627..628)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1636
                     /gene="ROBO1"
                     /coded_by="XM_054076902.1:16..4926"
                     /db_xref="GeneID:104055995"
ORIGIN      
        1 mlmllknifi kdsddlergn dsgtplptsd ngdnslgytg srlrqedfpp rivehpsdli
       61 vskgepatln ckaegrptpt iewykggerv etdkddprsh rmllpsgslf flrivhgrks
      121 rpdegvyvcv arnylgeavs hnaslevail rddfrqnpsd vmvavgepav mecqpprghp
      181 eptiswkkdg tplddkderi tirggklmit ytrkndagky vcvgtnmvge resevaeltv
      241 lerpsfvkrp snlavtvdds aefkceargd pvptvrwrkd dgelpkarye irddhtlkir
      301 kvmagdmgsy tcvaenmvgk aeasatltvq eppqfvvkpr dqvaalgrtv tfqceatgnp
      361 qpaifwrreg sqnllfsyqp pqsssrfsvs qtgdltitnv qrsdvgyyic qtlnvagsii
      421 tkaylevtdv iadrpppvir qgpvnqtvav dgtlvlncva tgtlmptilw kkdgilistq
      481 dsrikqletg alqiryaklg dtgrytcias tpsgeatwsa yievqefgvp vqpprptdpn
      541 lipsapskpe vtdvsrntvt lswqpnlnsg atptsyiiea fshasgsswq tvaenvktes
      601 favkglkpna iylflvraan ayglsdpsqi sdpvktqdvp ptsqgvdhkq vqrelgdvvl
      661 hlhnptilss ssievhwtvd qqsqyiqgyk ilyrpmpasy gesewlifev rtptknsvii
      721 pelkkgvnye ikarpffnef qgadsevkfa ktleeapsap pqsvsvtknd gngtaivvtw
      781 qpppednqng mvqeykvwcl gnesryhink tvdgstfsvv ipslvpgiry svevaastga
      841 gpgvksdpqf iqldshgnpv ssedqvslaq qisdvvkqpa fiagigaacw iilmvfsiwl
      901 yrhrkkrngl tstyagirkv psftftptvt yqrggeavss ggrpgllnit epatqpwlad
      961 twpntgnnhn dcsincctsg ngnsdsnltt ysrpadcian ynnqldnkqt nlmlpestvy
     1021 gdvdlsnkin emktfnspnl kdgrfvsqpg qptpyattql iqsnisnnvn ngsgdtnekh
     1081 wkpsvqqkqe vapiqynime qnklnkdyrv ndnvaptipy nqsydqntgg synssdrgss
     1141 tsgsqghkkg artpkapkqa gmnwadllpp ppahppphsn sedyslsvde sydqeipcpv
     1201 pparmylqqd eleeeeeder gptppvrgaa sspaavsysh qstatltpsp qeelqpmlqd
     1261 cqedlghiqh qperrrqtvs ppppprpisp phtygyisgp lvsdmdtdap eeeedeadve
     1321 vakmqnrrll lrgleqtpas svgdlessvt gsmingwgsa seednissgr ssvsssdgsf
     1381 ftdadfaqav aaaaeyaglk varrqmhdaa ggrrhfhash cprptspvst dsnmsavviq
     1441 kvrpakkqkh qpghlrrevy tddlppppvp ppaiksptaq sksqvevrpv mlpklasiea
     1501 rtdrsaerka tsykgrdgvd grqhsdvrtn sgerresqeq qndgklrgnk apkregtpak
     1561 thllqedilp ysrptfptsn nprdpsssss mssrgsgsrq radqaniarr nvaemqvlga
     1621 yvqgeeeeee meetes
//
LOCUS       XP_053932881            1633 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 1 isoform X6 [Cuculus canorus].
ACCESSION   XP_053932881
VERSION     XP_053932881.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076906.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1633
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1633
                     /product="roundabout homolog 1 isoform X6"
                     /calculated_mol_wt=179108
     Region          47..145
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          47..51
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(51,54,63,65,67,69,109..110)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          54..59
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          63..71
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          77..82
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          85..87
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          98..101
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          104..110
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          122..130
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          133..145
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          152..237
                     /region_name="IgI_2_Robo"
                     /note="Second immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05724"
                     /db_xref="CDD:409389"
     Region          152..155
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409389"
     Region          157..161
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409389"
     Region          165..172
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          180..185
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          187..190
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409389"
     Region          196..200
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409389"
     Region          202..208
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          215..223
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          226..237
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          244..326
                     /region_name="IgI_3_Robo"
                     /note="Third immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05725"
                     /db_xref="CDD:409390"
     Region          244..247
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409390"
     Region          249..253
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409390"
     Region          256..265
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          271..276
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          279..282
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409390"
     Region          285..290
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409390"
     Region          291..298
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          305..313
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          316..326
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          331..428
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          331..335
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          337..341
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          347..355
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          358..365
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          367..370
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          383..388
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          390..397
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          403..412
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          404..861
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          414..425
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          435..521
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          435..438
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          442..445
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          451..458
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          464..469
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          471..473
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          480..484
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          487..492
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          500..508
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          511..521
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          540..626
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(540,605,620)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(621..622,624..625)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1633
                     /gene="ROBO1"
                     /coded_by="XM_054076906.1:67..4968"
                     /db_xref="GeneID:104055995"
ORIGIN      
        1 mavlslllll glvdittaad itprikagsr wrgeknrsrl rqedfppriv ehpsdlivsk
       61 gepatlncka egrptptiew ykggervetd kddprshrml lpsgslfflr ivhgrksrpd
      121 egvyvcvarn ylgeavshna slevailrdd frqnpsdvmv avgepavmec qpprghpept
      181 iswkkdgtpl ddkderitir ggklmitytr kndagkyvcv gtnmvgeres evaeltvler
      241 psfvkrpsnl avtvddsaef kceargdpvp tvrwrkddge lpkaryeird dhtlkirkvm
      301 agdmgsytcv aenmvgkaea satltvqepp qfvvkprdqv aalgrtvtfq ceatgnpqpa
      361 ifwrregsqn llfsyqppqs ssrfsvsqtg dltitnvqrs dvgyyicqtl nvagsiitka
      421 ylevtdviad rpppvirqgp vnqtvavdgt lvlncvatgt lmptilwkkd gilistqdsr
      481 ikqletgalq iryaklgdtg rytciastps geatwsayie vqefgvpvqp prptdpnlip
      541 sapskpevtd vsrntvtlsw qpnlnsgatp tsyiieafsh asgsswqtva envktesfav
      601 kglkpnaiyl flvraanayg lsdpsqisdp vktqdvppts qgvdhkqvqr elgdvvlhlh
      661 nptilssssi evhwtvdqqs qyiqgykily rpmpasyges ewlifevrtp tknsviipel
      721 kkgvnyeika rpffnefqga dsevkfaktl eeapsappqs vsvtkndgng taivvtwqpp
      781 pednqngmvq eykvwclgne sryhinktvd gstfsvvips lvpgirysve vaastgagpg
      841 vksdpqfiql dshgnpvsse dqvslaqqis dvvkqpafia gigaacwiil mvfsiwlyrh
      901 rkkrngltst yagirkvpsf tftptvtyqr ggeavssggr pgllnitepa tqpwladtwp
      961 ntgnnhndcs incctsgngn sdsnlttysr padcianynn qldnkqtnlm lpestvygdv
     1021 dlsnkinemk tfnspnlkdg rfvsqpgqpt pyattqliqs nisnnvnngs gdtnekhwkp
     1081 svqqkqevap iqynimeqnk lnkdyrvndn vaptipynqs ydqntggsyn ssdrgsstsg
     1141 sqghkkgart pkapkqagmn wadllppppa hppphsnsed yslsvdesyd qeipcpvppa
     1201 rmylqqdele eeeedergpt ppvrgaassp aavsyshqst atltpspqee lqpmlqdcqe
     1261 dlghiqhqpe rrrqtvsppp pprpisppht ygyisgplvs dmdtdapeee edeadvevak
     1321 mqnrrlllrg leqtpassvg dlessvtgsm ingwgsasee dnissgrssv sssdgsfftd
     1381 adfaqavaaa aeyaglkvar rqmhdaaggr rhfhashcpr ptspvstdsn msavviqkvr
     1441 pakkqkhqpg hlrrevytdd lppppvpppa iksptaqsks qvevrpvmlp klasieartd
     1501 rsaerkatsy kgrdgvdgrq hsdvrtnsge rresqeqqnd gklrgnkapk regtpakthl
     1561 lqedilpysr ptfptsnnpr dpsssssmss rgsgsrqrad qaniarrnva emqvlgayvq
     1621 geeeeeemee tes
//
LOCUS       XP_053932888            1628 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 1 isoform X7 [Cuculus canorus].
ACCESSION   XP_053932888
VERSION     XP_053932888.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076913.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1628
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1628
                     /product="roundabout homolog 1 isoform X7"
                     /calculated_mol_wt=178345
     Region          42..140
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          42..46
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(46,49,58,60,62,64,104..105)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          49..54
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          58..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          72..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          80..82
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          93..96
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          99..105
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          117..125
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          128..140
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          147..232
                     /region_name="IgI_2_Robo"
                     /note="Second immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05724"
                     /db_xref="CDD:409389"
     Region          147..150
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409389"
     Region          152..156
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409389"
     Region          160..167
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          175..180
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          182..185
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409389"
     Region          191..195
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409389"
     Region          197..203
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          210..218
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          221..232
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          239..321
                     /region_name="IgI_3_Robo"
                     /note="Third immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05725"
                     /db_xref="CDD:409390"
     Region          239..242
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409390"
     Region          244..248
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409390"
     Region          251..260
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          266..271
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          274..277
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409390"
     Region          280..285
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409390"
     Region          286..293
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          300..308
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          311..321
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          326..423
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          326..330
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          332..336
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          342..350
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          353..360
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          362..365
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          378..383
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          385..392
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          398..407
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          399..856
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          409..420
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          430..516
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          430..433
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          437..440
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          446..453
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          459..464
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          466..468
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          475..479
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          482..487
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          495..503
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          506..516
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          535..621
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(535,600,615)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(616..617,619..620)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1628
                     /gene="ROBO1"
                     /coded_by="XM_054076913.1:16..4902"
                     /db_xref="GeneID:104055995"
ORIGIN      
        1 mvsdsddler gndsgtplpt sdngdnslgy tgsrlrqedf pprivehpsd livskgepat
       61 lnckaegrpt ptiewykgge rvetdkddpr shrmllpsgs lfflrivhgr ksrpdegvyv
      121 cvarnylgea vshnasleva ilrddfrqnp sdvmvavgep avmecqpprg hpeptiswkk
      181 dgtplddkde ritirggklm itytrkndag kyvcvgtnmv geresevael tvlerpsfvk
      241 rpsnlavtvd dsaefkcear gdpvptvrwr kddgelpkar yeirddhtlk irkvmagdmg
      301 sytcvaenmv gkaeasatlt vqeppqfvvk prdqvaalgr tvtfqceatg npqpaifwrr
      361 egsqnllfsy qppqsssrfs vsqtgdltit nvqrsdvgyy icqtlnvags iitkaylevt
      421 dviadrpppv irqgpvnqtv avdgtlvlnc vatgtlmpti lwkkdgilis tqdsrikqle
      481 tgalqiryak lgdtgrytci astpsgeatw sayievqefg vpvqpprptd pnlipsapsk
      541 pevtdvsrnt vtlswqpnln sgatptsyii eafshasgss wqtvaenvkt esfavkglkp
      601 naiylflvra anayglsdps qisdpvktqd vpptsqgvdh kqvqrelgdv vlhlhnptil
      661 ssssievhwt vdqqsqyiqg ykilyrpmpa sygesewlif evrtptknsv iipelkkgvn
      721 yeikarpffn efqgadsevk faktleeaps appqsvsvtk ndgngtaivv twqpppednq
      781 ngmvqeykvw clgnesryhi nktvdgstfs vvipslvpgi rysvevaast gagpgvksdp
      841 qfiqldshgn pvssedqvsl aqqisdvvkq pafiagigaa cwiilmvfsi wlyrhrkkrn
      901 gltstyagir kvpsftftpt vtyqrggeav ssggrpglln itepatqpwl adtwpntgnn
      961 hndcsincct sgngnsdsnl ttysrpadci anynnqldnk qtnlmlpest vygdvdlsnk
     1021 inemktfnsp nlkdgrfvsq pgqptpyatt qliqsnisnn vnngsgdtne khwkpsvqqk
     1081 qevapiqyni meqnklnkdy rvndnvapti pynqsydqnt ggsynssdrg sstsgsqghk
     1141 kgartpkapk qagmnwadll ppppahppph snsedyslsv desydqeipc pvpparmylq
     1201 qdeleeeeed ergptppvrg aasspaavsy shqstatltp spqeelqpml qdcqedlghi
     1261 qhqperrrqt vsppppprpi spphtygyis gplvsdmdtd apeeeedead vevakmqnrr
     1321 lllrgleqtp assvgdless vtgsmingwg saseedniss grssvsssdg sfftdadfaq
     1381 avaaaaeyag lkvarrqmhd aaggrrhfha shcprptspv stdsnmsavv iqkvrpakkq
     1441 khqpghlrre vytddlpppp vpppaikspt aqsksqvevr pvmlpklasi eartdrsaer
     1501 katsykgrdg vdgrqhsdvr tnsgerresq eqqndgklrg nkapkregtp akthllqedi
     1561 lpysrptfpt snnprdpsss ssmssrgsgs rqradqania rrnvaemqvl gayvqgeeee
     1621 eemeetes
//
LOCUS       XP_053932894            1615 aa            linear   VRT 09-MAR-2023
DEFINITION  roundabout homolog 1 isoform X8 [Cuculus canorus].
ACCESSION   XP_053932894
VERSION     XP_053932894.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076919.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1615
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1615
                     /product="roundabout homolog 1 isoform X8"
                     /calculated_mol_wt=177181
     Region          29..127
                     /region_name="IgC_1_Robo"
                     /note="First immunoglobulin (Ig)-like constant domain in
                     Robo (roundabout) receptors, and similar domains; cd07693"
                     /db_xref="CDD:409490"
     Region          29..33
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409490"
     Site            order(33,36,45,47,49,51,91..92)
                     /site_type="other"
                     /note="Slit binding interface [polypeptide binding]"
                     /db_xref="CDD:409490"
     Region          36..41
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409490"
     Region          45..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409490"
     Region          59..64
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409490"
     Region          67..69
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409490"
     Region          80..83
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409490"
     Region          86..92
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409490"
     Region          104..112
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409490"
     Region          115..127
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409490"
     Region          134..219
                     /region_name="IgI_2_Robo"
                     /note="Second immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05724"
                     /db_xref="CDD:409389"
     Region          134..137
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409389"
     Region          139..143
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409389"
     Region          147..154
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409389"
     Region          162..167
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409389"
     Region          169..172
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409389"
     Region          178..182
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409389"
     Region          184..190
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409389"
     Region          197..205
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409389"
     Region          208..219
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409389"
     Region          226..308
                     /region_name="IgI_3_Robo"
                     /note="Third immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05725"
                     /db_xref="CDD:409390"
     Region          226..229
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409390"
     Region          231..235
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409390"
     Region          238..247
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409390"
     Region          253..258
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409390"
     Region          261..264
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409390"
     Region          267..272
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409390"
     Region          273..280
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409390"
     Region          287..295
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409390"
     Region          298..308
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409390"
     Region          313..410
                     /region_name="IgI_4_Robo"
                     /note="Fourth immunoglobulin (Ig)-like domain in Robo
                     (roundabout) receptors; member of the I-set of Ig
                     superfamily (IgSF) domains; cd05726"
                     /db_xref="CDD:409391"
     Region          313..317
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409391"
     Region          319..323
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409391"
     Region          329..337
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409391"
     Region          340..347
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409391"
     Region          349..352
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409391"
     Region          365..370
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409391"
     Region          372..379
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409391"
     Region          385..394
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409391"
     Region          386..843
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          396..407
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409391"
     Region          417..503
                     /region_name="IgI_5_Robo"
                     /note="Fifth Ig-like domain of Roundabout (Robo) homolog
                     1/2, and similar domains; a member of the I-set of IgSF
                     domains; cd20952"
                     /db_xref="CDD:409544"
     Region          417..420
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409544"
     Region          424..427
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409544"
     Region          433..440
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          446..451
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          453..455
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409544"
     Region          462..466
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409544"
     Region          469..474
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          482..490
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          493..503
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          522..608
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(522,587,602)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(603..604,606..607)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1615
                     /gene="ROBO1"
                     /coded_by="XM_054076919.1:739..5586"
                     /db_xref="GeneID:104055995"
ORIGIN      
        1 miadfahfyl fgfvcltags rlrqedfppr ivehpsdliv skgepatlnc kaegrptpti
       61 ewykggerve tdkddprshr mllpsgslff lrivhgrksr pdegvyvcva rnylgeavsh
      121 naslevailr ddfrqnpsdv mvavgepavm ecqpprghpe ptiswkkdgt plddkderit
      181 irggklmity trkndagkyv cvgtnmvger esevaeltvl erpsfvkrps nlavtvddsa
      241 efkceargdp vptvrwrkdd gelpkaryei rddhtlkirk vmagdmgsyt cvaenmvgka
      301 easatltvqe ppqfvvkprd qvaalgrtvt fqceatgnpq paifwrregs qnllfsyqpp
      361 qsssrfsvsq tgdltitnvq rsdvgyyicq tlnvagsiit kaylevtdvi adrpppvirq
      421 gpvnqtvavd gtlvlncvat gtlmptilwk kdgilistqd srikqletga lqiryaklgd
      481 tgrytciast psgeatwsay ievqefgvpv qpprptdpnl ipsapskpev tdvsrntvtl
      541 swqpnlnsga tptsyiieaf shasgsswqt vaenvktesf avkglkpnai ylflvraana
      601 yglsdpsqis dpvktqdvpp tsqgvdhkqv qrelgdvvlh lhnptilsss sievhwtvdq
      661 qsqyiqgyki lyrpmpasyg esewlifevr tptknsviip elkkgvnyei karpffnefq
      721 gadsevkfak tleeapsapp qsvsvtkndg ngtaivvtwq pppednqngm vqeykvwclg
      781 nesryhinkt vdgstfsvvi pslvpgirys vevaastgag pgvksdpqfi qldshgnpvs
      841 sedqvslaqq isdvvkqpaf iagigaacwi ilmvfsiwly rhrkkrnglt styagirkvp
      901 sftftptvty qrggeavssg grpgllnite patqpwladt wpntgnnhnd csincctsgn
      961 gnsdsnltty srpadciany nnqldnkqtn lmlpestvyg dvdlsnkine mktfnspnlk
     1021 dgrfvsqpgq ptpyattqli qsnisnnvnn gsgdtnekhw kpsvqqkqev apiqynimeq
     1081 nklnkdyrvn dnvaptipyn qsydqntggs ynssdrgsst sgsqghkkga rtpkapkqag
     1141 mnwadllppp pahppphsns edyslsvdes ydqeipcpvp parmylqqde leeeeederg
     1201 ptppvrgaas spaavsyshq statltpspq eelqpmlqdc qedlghiqhq perrrqtvsp
     1261 pppprpispp htygyisgpl vsdmdtdape eeedeadvev akmqnrrlll rgleqtpass
     1321 vgdlessvtg smingwgsas eednissgrs svsssdgsff tdadfaqava aaaeyaglkv
     1381 arrqmhdaag grrhfhashc prptspvstd snmsavviqk vrpakkqkhq pghlrrevyt
     1441 ddlppppvpp paiksptaqs ksqvevrpvm lpklasiear tdrsaerkat sykgrdgvdg
     1501 rqhsdvrtns gerresqeqq ndgklrgnka pkregtpakt hllqedilpy srptfptsnn
     1561 prdpsssssm ssrgsgsrqr adqaniarrn vaemqvlgay vqgeeeeeem eetes
//
LOCUS       XP_053932907             499 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-aminobutyric acid receptor subunit beta-3 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053932907
VERSION     XP_053932907.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076932.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..499
                     /product="gamma-aminobutyric acid receptor subunit beta-3
                     isoform X1"
                     /calculated_mol_wt=57404
     Region          50..497
                     /region_name="LIC"
                     /note="Cation transporter family protein; TIGR00860"
                     /db_xref="CDD:273305"
     CDS             1..499
                     /gene="GABRB3"
                     /coded_by="XM_054076932.1:291..1790"
                     /db_xref="GeneID:104056662"
ORIGIN      
        1 msqyilwiff latmkargel pfiaennaam mvnwnaveen kklyaiydts vndpgnmsfv
       61 ketvdkllkg ydirlrpdfg gppvcvgmni diasidmvse vnmdytltmy fqqywrdkrl
      121 ayagiplnlt ldnrvadqlw vpdtyflndk ksfvhgvtvk nrmirlhpdg tvlyglritt
      181 taacmmdlrr ypldeqnctl eiesygyttd diefywrggd navtgverie lpqfsiveyr
      241 lvsknvvfat gayprlslsf rlkrnigyfi lqtympsili tilswvsfwi nydasaarva
      301 lgittvltmt tinthlretl pkipyvkaid mylmgcfvfv flalleyafv nyiffgkgpq
      361 rqkklaekta kanndrskfe gnrvdthgni lltsleihne vasnevttsv tdarnstisf
      421 dnsgiqyrkq sshreslgrr ssertgshsk rghlrrrssq lkikipdltd vnaidrwsrm
      481 vfpftfslfn liywlyyvn
//
LOCUS       XP_053932915             476 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-aminobutyric acid receptor subunit beta-3 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053932915
VERSION     XP_053932915.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076940.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..476
                     /product="gamma-aminobutyric acid receptor subunit beta-3
                     isoform X2"
                     /calculated_mol_wt=54329
     Region          14..474
                     /region_name="LIC"
                     /note="Cation transporter family protein; TIGR00860"
                     /db_xref="CDD:273305"
     CDS             1..476
                     /gene="GABRB3"
                     /coded_by="XM_054076940.1:104..1534"
                     /db_xref="GeneID:104056662"
ORIGIN      
        1 mwgfgggrif gifsapvlva vvccaqsvnd pgnmsfvket vdkllkgydi rlrpdfggpp
       61 vcvgmnidia sidmvsevnm dytltmyfqq ywrdkrlaya giplnltldn rvadqlwvpd
      121 tyflndkksf vhgvtvknrm irlhpdgtvl yglritttaa cmmdlrrypl deqnctleie
      181 sygyttddie fywrggdnav tgverielpq fsiveyrlvs knvvfatgay prlslsfrlk
      241 rnigyfilqt ympsilitil swvsfwinyd asaarvalgi ttvltmttin thlretlpki
      301 pyvkaidmyl mgcfvfvfla lleyafvnyi ffgkgpqrqk klaektakan ndrskfegnr
      361 vdthgnillt sleihnevas nevttsvtda rnstisfdns giqyrkqssh reslgrrsse
      421 rtgshskrgh lrrrssqlki kipdltdvna idrwsrmvfp ftfslfnliy wlyyvn
//
LOCUS       XP_053932924             391 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-aminobutyric acid receptor subunit beta-3 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053932924
VERSION     XP_053932924.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076949.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..391
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..391
                     /product="gamma-aminobutyric acid receptor subunit beta-3
                     isoform X3"
                     /calculated_mol_wt=45199
     Region          1..389
                     /region_name="LIC"
                     /note="Cation transporter family protein; cl42365"
                     /db_xref="CDD:455710"
     CDS             1..391
                     /gene="GABRB3"
                     /coded_by="XM_054076949.1:103..1278"
                     /db_xref="GeneID:104056662"
ORIGIN      
        1 myfqqywrdk rlayagipln ltldnrvadq lwvpdtyfln dkksfvhgvt vknrmirlhp
       61 dgtvlyglri tttaacmmdl rrypldeqnc tleiesygyt tddiefywrg gdnavtgver
      121 ielpqfsive yrlvsknvvf atgayprlsl sfrlkrnigy filqtympsi litilswvsf
      181 winydasaar valgittvlt mttinthlre tlpkipyvka idmylmgcfv fvflalleya
      241 fvnyiffgkg pqrqkklaek takanndrsk fegnrvdthg nilltsleih nevasnevtt
      301 svtdarnsti sfdnsgiqyr kqsshreslg rrssertgsh skrghlrrrs sqlkikipdl
      361 tdvnaidrws rmvfpftfsl fnliywlyyv n
//
LOCUS       XP_053932938             463 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-aminobutyric acid receptor subunit alpha-5 [Cuculus canorus].
ACCESSION   XP_053932938
VERSION     XP_053932938.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076963.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..463
                     /product="gamma-aminobutyric acid receptor subunit
                     alpha-5"
                     /calculated_mol_wt=52125
     Region          51..449
                     /region_name="LIC"
                     /note="Cation transporter family protein; cl42365"
                     /db_xref="CDD:455710"
     Region          58..256
                     /region_name="LGIC_ECD_GABAAR_A5"
                     /note="extracellular domain of gamma-aminobutyric acid
                     receptor subunit alpha-5 (GABAAR-A5 or GABRA5); cd19038"
                     /db_xref="CDD:349839"
     Site            order(71,99)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:349839"
     Site            order(83,85..86,91..92,99,101..102,119,121..122,131..136,
                     139,141,143..144,150..152,154,164..166,194,256)
                     /site_type="other"
                     /note="pentamer interface [polypeptide binding]"
                     /db_xref="CDD:349839"
     Region          173..187
                     /region_name="Cys-loop"
                     /note="Cys-loop [structural motif]"
                     /db_xref="CDD:349839"
     CDS             1..463
                     /gene="GABRA5"
                     /coded_by="XM_054076963.1:236..1627"
                     /db_xref="GeneID:104056663"
ORIGIN      
        1 mdngmvsdfi miknfflfcv smslashfgf sqtptasgke aandnitift rildglldgy
       61 dnrlrpglge ritqvktdiy vtsfgpvsdt emeytidvff rqswkderlr fkgpmqrlpl
      121 nnllaskiwt pdtffhngkk siahnmttpn kllrleddgt llytmrltis aecpmqledf
      181 pmdahacplk fgsyaypnse viyvwtnstt tsvvvaedgs rlnqyhlmgq tvgtenists
      241 tgeytimtah fhlkrkigyf viqtylpcim tvilsqvsfw lnresvpart vfgvttvltm
      301 ttlsisarns lpkvayatam dwfiavcyaf vfsaliefat vnyftkrswa wdgkkaleaa
      361 kikkkereml rnkstntyst gkmtpapnmp kdsapsvish ttsapvkaae ekpaeskkty
      421 nsiskidkms riifpvlfgt fnlvywatyl nrepvikgan sqk
//
LOCUS       XP_053932947             463 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-aminobutyric acid receptor subunit alpha-5 [Cuculus canorus].
ACCESSION   XP_053932947
VERSION     XP_053932947.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076972.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..463
                     /product="gamma-aminobutyric acid receptor subunit
                     alpha-5"
                     /calculated_mol_wt=52125
     Region          51..449
                     /region_name="LIC"
                     /note="Cation transporter family protein; cl42365"
                     /db_xref="CDD:455710"
     Region          58..256
                     /region_name="LGIC_ECD_GABAAR_A5"
                     /note="extracellular domain of gamma-aminobutyric acid
                     receptor subunit alpha-5 (GABAAR-A5 or GABRA5); cd19038"
                     /db_xref="CDD:349839"
     Site            order(71,99)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:349839"
     Site            order(83,85..86,91..92,99,101..102,119,121..122,131..136,
                     139,141,143..144,150..152,154,164..166,194,256)
                     /site_type="other"
                     /note="pentamer interface [polypeptide binding]"
                     /db_xref="CDD:349839"
     Region          173..187
                     /region_name="Cys-loop"
                     /note="Cys-loop [structural motif]"
                     /db_xref="CDD:349839"
     CDS             1..463
                     /gene="GABRA5"
                     /coded_by="XM_054076972.1:274..1665"
                     /db_xref="GeneID:104056663"
ORIGIN      
        1 mdngmvsdfi miknfflfcv smslashfgf sqtptasgke aandnitift rildglldgy
       61 dnrlrpglge ritqvktdiy vtsfgpvsdt emeytidvff rqswkderlr fkgpmqrlpl
      121 nnllaskiwt pdtffhngkk siahnmttpn kllrleddgt llytmrltis aecpmqledf
      181 pmdahacplk fgsyaypnse viyvwtnstt tsvvvaedgs rlnqyhlmgq tvgtenists
      241 tgeytimtah fhlkrkigyf viqtylpcim tvilsqvsfw lnresvpart vfgvttvltm
      301 ttlsisarns lpkvayatam dwfiavcyaf vfsaliefat vnyftkrswa wdgkkaleaa
      361 kikkkereml rnkstntyst gkmtpapnmp kdsapsvish ttsapvkaae ekpaeskkty
      421 nsiskidkms riifpvlfgt fnlvywatyl nrepvikgan sqk
//
LOCUS       XP_053932953             463 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-aminobutyric acid receptor subunit alpha-5 [Cuculus canorus].
ACCESSION   XP_053932953
VERSION     XP_053932953.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076978.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..463
                     /product="gamma-aminobutyric acid receptor subunit
                     alpha-5"
                     /calculated_mol_wt=52125
     Region          51..449
                     /region_name="LIC"
                     /note="Cation transporter family protein; cl42365"
                     /db_xref="CDD:455710"
     Region          58..256
                     /region_name="LGIC_ECD_GABAAR_A5"
                     /note="extracellular domain of gamma-aminobutyric acid
                     receptor subunit alpha-5 (GABAAR-A5 or GABRA5); cd19038"
                     /db_xref="CDD:349839"
     Site            order(71,99)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:349839"
     Site            order(83,85..86,91..92,99,101..102,119,121..122,131..136,
                     139,141,143..144,150..152,154,164..166,194,256)
                     /site_type="other"
                     /note="pentamer interface [polypeptide binding]"
                     /db_xref="CDD:349839"
     Region          173..187
                     /region_name="Cys-loop"
                     /note="Cys-loop [structural motif]"
                     /db_xref="CDD:349839"
     CDS             1..463
                     /gene="GABRA5"
                     /coded_by="XM_054076978.1:205..1596"
                     /db_xref="GeneID:104056663"
ORIGIN      
        1 mdngmvsdfi miknfflfcv smslashfgf sqtptasgke aandnitift rildglldgy
       61 dnrlrpglge ritqvktdiy vtsfgpvsdt emeytidvff rqswkderlr fkgpmqrlpl
      121 nnllaskiwt pdtffhngkk siahnmttpn kllrleddgt llytmrltis aecpmqledf
      181 pmdahacplk fgsyaypnse viyvwtnstt tsvvvaedgs rlnqyhlmgq tvgtenists
      241 tgeytimtah fhlkrkigyf viqtylpcim tvilsqvsfw lnresvpart vfgvttvltm
      301 ttlsisarns lpkvayatam dwfiavcyaf vfsaliefat vnyftkrswa wdgkkaleaa
      361 kikkkereml rnkstntyst gkmtpapnmp kdsapsvish ttsapvkaae ekpaeskkty
      421 nsiskidkms riifpvlfgt fnlvywatyl nrepvikgan sqk
//
LOCUS       XP_053932957             463 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-aminobutyric acid receptor subunit alpha-5 [Cuculus canorus].
ACCESSION   XP_053932957
VERSION     XP_053932957.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076982.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..463
                     /product="gamma-aminobutyric acid receptor subunit
                     alpha-5"
                     /calculated_mol_wt=52125
     Region          51..449
                     /region_name="LIC"
                     /note="Cation transporter family protein; cl42365"
                     /db_xref="CDD:455710"
     Region          58..256
                     /region_name="LGIC_ECD_GABAAR_A5"
                     /note="extracellular domain of gamma-aminobutyric acid
                     receptor subunit alpha-5 (GABAAR-A5 or GABRA5); cd19038"
                     /db_xref="CDD:349839"
     Site            order(71,99)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:349839"
     Site            order(83,85..86,91..92,99,101..102,119,121..122,131..136,
                     139,141,143..144,150..152,154,164..166,194,256)
                     /site_type="other"
                     /note="pentamer interface [polypeptide binding]"
                     /db_xref="CDD:349839"
     Region          173..187
                     /region_name="Cys-loop"
                     /note="Cys-loop [structural motif]"
                     /db_xref="CDD:349839"
     CDS             1..463
                     /gene="GABRA5"
                     /coded_by="XM_054076982.1:240..1631"
                     /db_xref="GeneID:104056663"
ORIGIN      
        1 mdngmvsdfi miknfflfcv smslashfgf sqtptasgke aandnitift rildglldgy
       61 dnrlrpglge ritqvktdiy vtsfgpvsdt emeytidvff rqswkderlr fkgpmqrlpl
      121 nnllaskiwt pdtffhngkk siahnmttpn kllrleddgt llytmrltis aecpmqledf
      181 pmdahacplk fgsyaypnse viyvwtnstt tsvvvaedgs rlnqyhlmgq tvgtenists
      241 tgeytimtah fhlkrkigyf viqtylpcim tvilsqvsfw lnresvpart vfgvttvltm
      301 ttlsisarns lpkvayatam dwfiavcyaf vfsaliefat vnyftkrswa wdgkkaleaa
      361 kikkkereml rnkstntyst gkmtpapnmp kdsapsvish ttsapvkaae ekpaeskkty
      421 nsiskidkms riifpvlfgt fnlvywatyl nrepvikgan sqk
//
LOCUS       XP_053932964             463 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-aminobutyric acid receptor subunit alpha-5 [Cuculus canorus].
ACCESSION   XP_053932964
VERSION     XP_053932964.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076989.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..463
                     /product="gamma-aminobutyric acid receptor subunit
                     alpha-5"
                     /calculated_mol_wt=52125
     Region          51..449
                     /region_name="LIC"
                     /note="Cation transporter family protein; cl42365"
                     /db_xref="CDD:455710"
     Region          58..256
                     /region_name="LGIC_ECD_GABAAR_A5"
                     /note="extracellular domain of gamma-aminobutyric acid
                     receptor subunit alpha-5 (GABAAR-A5 or GABRA5); cd19038"
                     /db_xref="CDD:349839"
     Site            order(71,99)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:349839"
     Site            order(83,85..86,91..92,99,101..102,119,121..122,131..136,
                     139,141,143..144,150..152,154,164..166,194,256)
                     /site_type="other"
                     /note="pentamer interface [polypeptide binding]"
                     /db_xref="CDD:349839"
     Region          173..187
                     /region_name="Cys-loop"
                     /note="Cys-loop [structural motif]"
                     /db_xref="CDD:349839"
     CDS             1..463
                     /gene="GABRA5"
                     /coded_by="XM_054076989.1:279..1670"
                     /db_xref="GeneID:104056663"
ORIGIN      
        1 mdngmvsdfi miknfflfcv smslashfgf sqtptasgke aandnitift rildglldgy
       61 dnrlrpglge ritqvktdiy vtsfgpvsdt emeytidvff rqswkderlr fkgpmqrlpl
      121 nnllaskiwt pdtffhngkk siahnmttpn kllrleddgt llytmrltis aecpmqledf
      181 pmdahacplk fgsyaypnse viyvwtnstt tsvvvaedgs rlnqyhlmgq tvgtenists
      241 tgeytimtah fhlkrkigyf viqtylpcim tvilsqvsfw lnresvpart vfgvttvltm
      301 ttlsisarns lpkvayatam dwfiavcyaf vfsaliefat vnyftkrswa wdgkkaleaa
      361 kikkkereml rnkstntyst gkmtpapnmp kdsapsvish ttsapvkaae ekpaeskkty
      421 nsiskidkms riifpvlfgt fnlvywatyl nrepvikgan sqk
//
LOCUS       XP_053932971             463 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-aminobutyric acid receptor subunit alpha-5 [Cuculus canorus].
ACCESSION   XP_053932971
VERSION     XP_053932971.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054076996.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..463
                     /product="gamma-aminobutyric acid receptor subunit
                     alpha-5"
                     /calculated_mol_wt=52125
     Region          51..449
                     /region_name="LIC"
                     /note="Cation transporter family protein; cl42365"
                     /db_xref="CDD:455710"
     Region          58..256
                     /region_name="LGIC_ECD_GABAAR_A5"
                     /note="extracellular domain of gamma-aminobutyric acid
                     receptor subunit alpha-5 (GABAAR-A5 or GABRA5); cd19038"
                     /db_xref="CDD:349839"
     Site            order(71,99)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:349839"
     Site            order(83,85..86,91..92,99,101..102,119,121..122,131..136,
                     139,141,143..144,150..152,154,164..166,194,256)
                     /site_type="other"
                     /note="pentamer interface [polypeptide binding]"
                     /db_xref="CDD:349839"
     Region          173..187
                     /region_name="Cys-loop"
                     /note="Cys-loop [structural motif]"
                     /db_xref="CDD:349839"
     CDS             1..463
                     /gene="GABRA5"
                     /coded_by="XM_054076996.1:206..1597"
                     /db_xref="GeneID:104056663"
ORIGIN      
        1 mdngmvsdfi miknfflfcv smslashfgf sqtptasgke aandnitift rildglldgy
       61 dnrlrpglge ritqvktdiy vtsfgpvsdt emeytidvff rqswkderlr fkgpmqrlpl
      121 nnllaskiwt pdtffhngkk siahnmttpn kllrleddgt llytmrltis aecpmqledf
      181 pmdahacplk fgsyaypnse viyvwtnstt tsvvvaedgs rlnqyhlmgq tvgtenists
      241 tgeytimtah fhlkrkigyf viqtylpcim tvilsqvsfw lnresvpart vfgvttvltm
      301 ttlsisarns lpkvayatam dwfiavcyaf vfsaliefat vnyftkrswa wdgkkaleaa
      361 kikkkereml rnkstntyst gkmtpapnmp kdsapsvish ttsapvkaae ekpaeskkty
      421 nsiskidkms riifpvlfgt fnlvywatyl nrepvikgan sqk
//
LOCUS       XP_053932978             463 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-aminobutyric acid receptor subunit alpha-5 [Cuculus canorus].
ACCESSION   XP_053932978
VERSION     XP_053932978.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077003.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..463
                     /product="gamma-aminobutyric acid receptor subunit
                     alpha-5"
                     /calculated_mol_wt=52125
     Region          51..449
                     /region_name="LIC"
                     /note="Cation transporter family protein; cl42365"
                     /db_xref="CDD:455710"
     Region          58..256
                     /region_name="LGIC_ECD_GABAAR_A5"
                     /note="extracellular domain of gamma-aminobutyric acid
                     receptor subunit alpha-5 (GABAAR-A5 or GABRA5); cd19038"
                     /db_xref="CDD:349839"
     Site            order(71,99)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:349839"
     Site            order(83,85..86,91..92,99,101..102,119,121..122,131..136,
                     139,141,143..144,150..152,154,164..166,194,256)
                     /site_type="other"
                     /note="pentamer interface [polypeptide binding]"
                     /db_xref="CDD:349839"
     Region          173..187
                     /region_name="Cys-loop"
                     /note="Cys-loop [structural motif]"
                     /db_xref="CDD:349839"
     CDS             1..463
                     /gene="GABRA5"
                     /coded_by="XM_054077003.1:219..1610"
                     /db_xref="GeneID:104056663"
ORIGIN      
        1 mdngmvsdfi miknfflfcv smslashfgf sqtptasgke aandnitift rildglldgy
       61 dnrlrpglge ritqvktdiy vtsfgpvsdt emeytidvff rqswkderlr fkgpmqrlpl
      121 nnllaskiwt pdtffhngkk siahnmttpn kllrleddgt llytmrltis aecpmqledf
      181 pmdahacplk fgsyaypnse viyvwtnstt tsvvvaedgs rlnqyhlmgq tvgtenists
      241 tgeytimtah fhlkrkigyf viqtylpcim tvilsqvsfw lnresvpart vfgvttvltm
      301 ttlsisarns lpkvayatam dwfiavcyaf vfsaliefat vnyftkrswa wdgkkaleaa
      361 kikkkereml rnkstntyst gkmtpapnmp kdsapsvish ttsapvkaae ekpaeskkty
      421 nsiskidkms riifpvlfgt fnlvywatyl nrepvikgan sqk
//
LOCUS       XP_053932985             463 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-aminobutyric acid receptor subunit alpha-5 [Cuculus canorus].
ACCESSION   XP_053932985
VERSION     XP_053932985.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077010.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..463
                     /product="gamma-aminobutyric acid receptor subunit
                     alpha-5"
                     /calculated_mol_wt=52125
     Region          51..449
                     /region_name="LIC"
                     /note="Cation transporter family protein; cl42365"
                     /db_xref="CDD:455710"
     Region          58..256
                     /region_name="LGIC_ECD_GABAAR_A5"
                     /note="extracellular domain of gamma-aminobutyric acid
                     receptor subunit alpha-5 (GABAAR-A5 or GABRA5); cd19038"
                     /db_xref="CDD:349839"
     Site            order(71,99)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:349839"
     Site            order(83,85..86,91..92,99,101..102,119,121..122,131..136,
                     139,141,143..144,150..152,154,164..166,194,256)
                     /site_type="other"
                     /note="pentamer interface [polypeptide binding]"
                     /db_xref="CDD:349839"
     Region          173..187
                     /region_name="Cys-loop"
                     /note="Cys-loop [structural motif]"
                     /db_xref="CDD:349839"
     CDS             1..463
                     /gene="GABRA5"
                     /coded_by="XM_054077010.1:90..1481"
                     /db_xref="GeneID:104056663"
ORIGIN      
        1 mdngmvsdfi miknfflfcv smslashfgf sqtptasgke aandnitift rildglldgy
       61 dnrlrpglge ritqvktdiy vtsfgpvsdt emeytidvff rqswkderlr fkgpmqrlpl
      121 nnllaskiwt pdtffhngkk siahnmttpn kllrleddgt llytmrltis aecpmqledf
      181 pmdahacplk fgsyaypnse viyvwtnstt tsvvvaedgs rlnqyhlmgq tvgtenists
      241 tgeytimtah fhlkrkigyf viqtylpcim tvilsqvsfw lnresvpart vfgvttvltm
      301 ttlsisarns lpkvayatam dwfiavcyaf vfsaliefat vnyftkrswa wdgkkaleaa
      361 kikkkereml rnkstntyst gkmtpapnmp kdsapsvish ttsapvkaae ekpaeskkty
      421 nsiskidkms riifpvlfgt fnlvywatyl nrepvikgan sqk
//
LOCUS       XP_053932994             795 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase SIK1 [Cuculus canorus].
ACCESSION   XP_053932994
VERSION     XP_053932994.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077019.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..795
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..795
                     /product="serine/threonine-protein kinase SIK1"
                     /calculated_mol_wt=88539
     Region          23..275
                     /region_name="STKc_SIK"
                     /note="Catalytic domain of the Serine/Threonine Kinases,
                     Salt-Inducible kinases; cd14071"
                     /db_xref="CDD:270973"
     Site            order(30..34,38,51,53,84,100..103,107,109..110,112,
                     145..146,148,150..151,153,163..164,167,180..185,187,
                     217..220,222)
                     /site_type="active"
                     /db_xref="CDD:270973"
     Site            order(30..33,38,51,53,84,100..103,107,150..151,153,
                     163..164)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270973"
     Site            order(107,109..110,112,146,148,150,167,180..185,187,
                     217..220,222)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270973"
     Site            163..185
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270973"
     Region          297..346
                     /region_name="UBA_like_SF"
                     /note="UBA domain-like superfamily; cl21463"
                     /db_xref="CDD:473871"
     CDS             1..795
                     /gene="SIK1"
                     /coded_by="XM_054077019.1:244..2631"
                     /db_xref="GeneID:104059276"
ORIGIN      
        1 mvimsecsaa pgqgqqrplr vgfydiertl gkgnfavvkl arhrvtktqv aikiidktrl
       61 dpsnlekiyr evqimkllnh phiiklyqvm etkdmlyivt efakngemfd hltsnghlse
      121 searkkfwqi lsaveychsh hivhrdlkte nllldanmni kladfgfgnf yksgeplstw
      181 cgsppyaape vfegkeyegp hldiwslgvv lyvlvcgslp fdgpnlptlr qrvlegrfri
      241 pyfmsedcet lirrmlvvdp tkritisqik qhkwmqadps lqqqqslsfs mqnynsnlgd
      301 yneqvlgimq tlgidrqrtv eslqnssynh faaiyyllle rlkeyrssql ssrpatgrqq
      361 rprsseisnv empqdnltse tlrssllyqq pqsliqpslq aemdcdmsnp lqpvffpvdp
      421 nfnglfrnrs ispnsllett ineevrqeke ledeikaydp iripsntsrr htlaevtthf
      481 yqnappcivi sssasptegt ssdscltsss ndssaalssc lasqvmmgsp atarmtspfl
      541 asqsdapvlq aqgcmggasl lpvsfqegrr asdtsltqgl kafrqqlrkn artkgflgln
      601 kikgfarqvc qssssraars gmspfqhsqp nscmysssgs sregrsllee vlqqqrmlql
      661 qhhqllqtac pqssqasatn gvpssdslgt ckasnsllls elqrensfel afagnsqllq
      721 phffgvsvsp vssaahlldt hlyissnvsp vgttfsqqqs fsaqsptydv vtlqhgdcem
      781 edltsnqlgk fvlvk
//
LOCUS       XP_053933001            1693 aa            linear   VRT 09-MAR-2023
DEFINITION  lysine-specific demethylase 5A isoform X1 [Cuculus canorus].
ACCESSION   XP_053933001
VERSION     XP_053933001.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077026.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1693
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1693
                     /product="lysine-specific demethylase 5A isoform X1"
                     /calculated_mol_wt=192352
     Region          18..59
                     /region_name="JmjN"
                     /note="Small domain found in the jumonji family of
                     transcription factors; smart00545"
                     /db_xref="CDD:128818"
     Region          84..175
                     /region_name="ARID_KDM5A"
                     /note="ARID/BRIGHT DNA binding domain of lysine-specific
                     demethylase 5A (KDM5A); cd16873"
                     /db_xref="CDD:350637"
     Site            order(106..112,137,139..140,143,153,155..157,159)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:350637"
     Region          294..342
                     /region_name="PHD1_KDM5A"
                     /note="PHD finger 1 found in Lysine-specific demethylase
                     5A (KDM5A); cd15602"
                     /db_xref="CDD:277075"
     Site            order(294,306..310,314,334)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277075"
     Region          469..585
                     /region_name="JmjC"
                     /note="JmjC domain, hydroxylase; pfam02373"
                     /db_xref="CDD:396791"
     Region          675..727
                     /region_name="zf-C5HC2"
                     /note="C5HC2 zinc finger; pfam02928"
                     /db_xref="CDD:460750"
     Region          740..1072
                     /region_name="PLU-1"
                     /note="PLU-1-like protein; pfam08429"
                     /db_xref="CDD:462475"
     Region          1163..1215
                     /region_name="PHD2_KDM5A"
                     /note="PHD finger 2 found in Lysine-specific demethylase
                     5A (KDM5A); cd15606"
                     /db_xref="CDD:277079"
     Site            order(1163,1173..1177,1181,1210)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277079"
     Region          1609..1660
                     /region_name="PHD3_KDM5A"
                     /note="PHD finger 3 found in Lysine-specific demethylase
                     5A (KDM5A); cd15686"
                     /db_xref="CDD:277156"
     Site            order(1625..1630,1634,1636,1639)
                     /site_type="other"
                     /note="H3K4me3 binding site [polypeptide binding]"
                     /db_xref="CDD:277156"
     CDS             1..1693
                     /gene="KDM5A"
                     /coded_by="XM_054077026.1:1048..6129"
                     /db_xref="GeneID:104055909"
ORIGIN      
        1 maggggsrya aefvpppecp vfepsweefs dplgfigrir glaektgick irppkdwqpp
       61 facevqsfrf tpriqrlnel eamtrvkldf ldqlakfwel qgsnlkipvv erkildlygl
      121 skivaskggf evvtkekkws kvasrlgylp gkgtgsllks hyerilypye lfqsgvslmg
      181 iqkqnldlke kveaedlssd aqaspkqasr mnvvlkrtrr vksqaeggem srntelkklq
      241 ifgagpkmmg ltlgtkdked evtrrrkgtr seafgmqmrq rkgtlsvnfv dlyvclfcgr
      301 gnnedklllc dgcddsyhtf clipplpdvp kgdwrcpkcv aeecnkprea fgfeqavrey
      361 tlqsfgemad nfksdyfnmp vhmvptelve kefwrlvssi eedviveyga disskdfgsg
      421 fpvkdgrrkl mpeeedyals gwnlnnmpil eqsvlahina disgmkvpwl yvgmcfssfc
      481 whiedhwsys inylhwgepk twygvpsnaa eqledvmkel apelfesqpd llhqlvtimn
      541 pnvlmehgvp vyrtnqcage fvvtfprayh sgfnqgynfa eavnfctadw lpigrqcvsh
      601 yrrlgrhcvf sheelifkma adpesldvgl aamvckemtl lieeetrlrd svvqmgvlms
      661 eeevfelvpd derqctacrt tcflsaltcs cnperlvcly hpsdlcpcpm qkkclryryp
      721 ledlpsllyg vkvraqsydt wvsrvteals anlnhkkdvi elrvmledae drkypendlf
      781 rrlrdavkea etcasvaqll lskkqkhsrq sqdsgrtrtk ltmeelkafv qqlfslpcvi
      841 sqarqvknll ddveefhera qeammdeipd ssklqelidm gsglyvelpe lprlkqelqq
      901 arwldevrst lldpqrvtld vmkklidsgv glaphhavek amaelqellt vserweekak
      961 vclqarprqs mmalegvvne aknipaylpn vlalkealhr ardwtakvea vqngsnyayl
     1021 eqleslsakg rpipvrldal pqlesqvaaa rawrertgrt flkknssysl lqvlsprtdi
     1081 gvygssknrr krakelmeke kekdldlesl seledgleea rdtaavvaif kereqkeiea
     1141 mhalraanla kmtmvdriee ikfcicrkta sgfmlqcelc kdwfhsgcvp lpkmssqkkg
     1201 sswqakevkf lcplcmrsrr prletilsll vslqklpvrl pegealqclt eramswqdra
     1261 rqalatdels salaklsvls qrmveqaare ktekiisael qkaaanpdlq ghltsfqqsa
     1321 fnrvigsvss sprqtldydd eetdsdedvr etygydikdn asvkssssle pnlfcdeeip
     1381 ikseevvthm wtapsfcaeh ayssaskscs qgsstprkqp rksplvprsl eppvlelspg
     1441 akaqledlmm vgdllevsld etqhiwrilq athppsedrf lhvmeddsmd ekplkmrgrd
     1501 sserkrkrkl eraeqffgdm kqkskelkkl ekpkkkklkl tidktkelnk lakklakeee
     1561 rkkkqrekai vpkvelvkes aekkrekkvl dipskydwsg aeesddenav caaqncqrpc
     1621 kdkvdwvqcd ggcdewfhqv cvgvspemae nedyicinca kkpmqgpssp ahappppfll
     1681 syklpmedlk ets
//
LOCUS       XP_053933008            1611 aa            linear   VRT 09-MAR-2023
DEFINITION  lysine-specific demethylase 5A isoform X2 [Cuculus canorus].
ACCESSION   XP_053933008
VERSION     XP_053933008.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077033.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1611
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1611
                     /product="lysine-specific demethylase 5A isoform X2"
                     /calculated_mol_wt=183159
     Region          2..93
                     /region_name="ARID_KDM5A"
                     /note="ARID/BRIGHT DNA binding domain of lysine-specific
                     demethylase 5A (KDM5A); cd16873"
                     /db_xref="CDD:350637"
     Site            order(24..30,55,57..58,61,71,73..75,77)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:350637"
     Region          212..260
                     /region_name="PHD1_KDM5A"
                     /note="PHD finger 1 found in Lysine-specific demethylase
                     5A (KDM5A); cd15602"
                     /db_xref="CDD:277075"
     Site            order(212,224..228,232,252)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277075"
     Region          387..503
                     /region_name="JmjC"
                     /note="JmjC domain, hydroxylase; pfam02373"
                     /db_xref="CDD:396791"
     Region          593..645
                     /region_name="zf-C5HC2"
                     /note="C5HC2 zinc finger; pfam02928"
                     /db_xref="CDD:460750"
     Region          658..990
                     /region_name="PLU-1"
                     /note="PLU-1-like protein; pfam08429"
                     /db_xref="CDD:462475"
     Region          1081..1133
                     /region_name="PHD2_KDM5A"
                     /note="PHD finger 2 found in Lysine-specific demethylase
                     5A (KDM5A); cd15606"
                     /db_xref="CDD:277079"
     Site            order(1081,1091..1095,1099,1128)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277079"
     Region          1527..1578
                     /region_name="PHD3_KDM5A"
                     /note="PHD finger 3 found in Lysine-specific demethylase
                     5A (KDM5A); cd15686"
                     /db_xref="CDD:277156"
     Site            order(1543..1548,1552,1554,1557)
                     /site_type="other"
                     /note="H3K4me3 binding site [polypeptide binding]"
                     /db_xref="CDD:277156"
     CDS             1..1611
                     /gene="KDM5A"
                     /coded_by="XM_054077033.1:101..4936"
                     /db_xref="GeneID:104055909"
ORIGIN      
        1 mtrvkldfld qlakfwelqg snlkipvver kildlyglsk ivaskggfev vtkekkwskv
       61 asrlgylpgk gtgsllkshy erilypyelf qsgvslmgiq kqnldlkekv eaedlssdaq
      121 aspkqasrmn vvlkrtrrvk sqaeggemsr ntelkklqif gagpkmmglt lgtkdkedev
      181 trrrkgtrse afgmqmrqrk gtlsvnfvdl yvclfcgrgn nedklllcdg cddsyhtfcl
      241 ipplpdvpkg dwrcpkcvae ecnkpreafg feqavreytl qsfgemadnf ksdyfnmpvh
      301 mvptelveke fwrlvssiee dviveygadi sskdfgsgfp vkdgrrklmp eeedyalsgw
      361 nlnnmpileq svlahinadi sgmkvpwlyv gmcfssfcwh iedhwsysin ylhwgepktw
      421 ygvpsnaaeq ledvmkelap elfesqpdll hqlvtimnpn vlmehgvpvy rtnqcagefv
      481 vtfprayhsg fnqgynfaea vnfctadwlp igrqcvshyr rlgrhcvfsh eelifkmaad
      541 pesldvglaa mvckemtlli eeetrlrdsv vqmgvlmsee evfelvpdde rqctacrttc
      601 flsaltcscn perlvclyhp sdlcpcpmqk kclryryple dlpsllygvk vraqsydtwv
      661 srvtealsan lnhkkdviel rvmledaedr kypendlfrr lrdavkeaet casvaqllls
      721 kkqkhsrqsq dsgrtrtklt meelkafvqq lfslpcvisq arqvknlldd veefheraqe
      781 ammdeipdss klqelidmgs glyvelpelp rlkqelqqar wldevrstll dpqrvtldvm
      841 kklidsgvgl aphhavekam aelqelltvs erweekakvc lqarprqsmm alegvvneak
      901 nipaylpnvl alkealhrar dwtakveavq ngsnyayleq leslsakgrp ipvrldalpq
      961 lesqvaaara wrertgrtfl kknssysllq vlsprtdigv ygssknrrkr akelmekeke
     1021 kdldleslse ledgleeard taavvaifke reqkeieamh alraanlakm tmvdrieeik
     1081 fcicrktasg fmlqcelckd wfhsgcvplp kmssqkkgss wqakevkflc plcmrsrrpr
     1141 letilsllvs lqklpvrlpe gealqclter amswqdrarq alatdelssa laklsvlsqr
     1201 mveqaarekt ekiisaelqk aaanpdlqgh ltsfqqsafn rvigsvsssp rqtldyddee
     1261 tdsdedvret ygydikdnas vksssslepn lfcdeeipik seevvthmwt apsfcaehay
     1321 ssaskscsqg sstprkqprk splvprslep pvlelspgak aqledlmmvg dllevsldet
     1381 qhiwrilqat hppsedrflh vmeddsmdek plkmrgrdss erkrkrkler aeqffgdmkq
     1441 kskelkklek pkkkklklti dktkelnkla kklakeeerk kkqrekaivp kvelvkesae
     1501 kkrekkvldi pskydwsgae esddenavca aqncqrpckd kvdwvqcdgg cdewfhqvcv
     1561 gvspemaene dyicincakk pmqgpsspah appppfllsy klpmedlket s
//
LOCUS       XP_053933016            1365 aa            linear   VRT 09-MAR-2023
DEFINITION  lysine-specific demethylase 5A isoform X3 [Cuculus canorus].
ACCESSION   XP_053933016
VERSION     XP_053933016.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077041.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1365
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1365
                     /product="lysine-specific demethylase 5A isoform X3"
                     /calculated_mol_wt=154954
     Region          18..59
                     /region_name="JmjN"
                     /note="Small domain found in the jumonji family of
                     transcription factors; smart00545"
                     /db_xref="CDD:128818"
     Region          84..175
                     /region_name="ARID_KDM5A"
                     /note="ARID/BRIGHT DNA binding domain of lysine-specific
                     demethylase 5A (KDM5A); cd16873"
                     /db_xref="CDD:350637"
     Site            order(106..112,137,139..140,143,153,155..157,159)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:350637"
     Region          294..342
                     /region_name="PHD1_KDM5A"
                     /note="PHD finger 1 found in Lysine-specific demethylase
                     5A (KDM5A); cd15602"
                     /db_xref="CDD:277075"
     Site            order(294,306..310,314,334)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277075"
     Region          469..585
                     /region_name="JmjC"
                     /note="JmjC domain, hydroxylase; pfam02373"
                     /db_xref="CDD:396791"
     Region          675..727
                     /region_name="zf-C5HC2"
                     /note="C5HC2 zinc finger; pfam02928"
                     /db_xref="CDD:460750"
     Region          740..1072
                     /region_name="PLU-1"
                     /note="PLU-1-like protein; pfam08429"
                     /db_xref="CDD:462475"
     Region          1163..1215
                     /region_name="PHD2_KDM5A"
                     /note="PHD finger 2 found in Lysine-specific demethylase
                     5A (KDM5A); cd15606"
                     /db_xref="CDD:277079"
     Site            order(1163,1173..1177,1181,1210)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277079"
     CDS             1..1365
                     /gene="KDM5A"
                     /coded_by="XM_054077041.1:1054..5151"
                     /db_xref="GeneID:104055909"
ORIGIN      
        1 maggggsrya aefvpppecp vfepsweefs dplgfigrir glaektgick irppkdwqpp
       61 facevqsfrf tpriqrlnel eamtrvkldf ldqlakfwel qgsnlkipvv erkildlygl
      121 skivaskggf evvtkekkws kvasrlgylp gkgtgsllks hyerilypye lfqsgvslmg
      181 iqkqnldlke kveaedlssd aqaspkqasr mnvvlkrtrr vksqaeggem srntelkklq
      241 ifgagpkmmg ltlgtkdked evtrrrkgtr seafgmqmrq rkgtlsvnfv dlyvclfcgr
      301 gnnedklllc dgcddsyhtf clipplpdvp kgdwrcpkcv aeecnkprea fgfeqavrey
      361 tlqsfgemad nfksdyfnmp vhmvptelve kefwrlvssi eedviveyga disskdfgsg
      421 fpvkdgrrkl mpeeedyals gwnlnnmpil eqsvlahina disgmkvpwl yvgmcfssfc
      481 whiedhwsys inylhwgepk twygvpsnaa eqledvmkel apelfesqpd llhqlvtimn
      541 pnvlmehgvp vyrtnqcage fvvtfprayh sgfnqgynfa eavnfctadw lpigrqcvsh
      601 yrrlgrhcvf sheelifkma adpesldvgl aamvckemtl lieeetrlrd svvqmgvlms
      661 eeevfelvpd derqctacrt tcflsaltcs cnperlvcly hpsdlcpcpm qkkclryryp
      721 ledlpsllyg vkvraqsydt wvsrvteals anlnhkkdvi elrvmledae drkypendlf
      781 rrlrdavkea etcasvaqll lskkqkhsrq sqdsgrtrtk ltmeelkafv qqlfslpcvi
      841 sqarqvknll ddveefhera qeammdeipd ssklqelidm gsglyvelpe lprlkqelqq
      901 arwldevrst lldpqrvtld vmkklidsgv glaphhavek amaelqellt vserweekak
      961 vclqarprqs mmalegvvne aknipaylpn vlalkealhr ardwtakvea vqngsnyayl
     1021 eqleslsakg rpipvrldal pqlesqvaaa rawrertgrt flkknssysl lqvlsprtdi
     1081 gvygssknrr krakelmeke kekdldlesl seledgleea rdtaavvaif kereqkeiea
     1141 mhalraanla kmtmvdriee ikfcicrkta sgfmlqcelc kdwfhsgcvp lpkmssqkkg
     1201 sswqakevkf lcplcmrsrr prletilsll vslqklpvrl pegealqclt eramswqdra
     1261 rqalatdels salaklsvls qrmveqaare ktekiisael qkaaanpdlq ghltsfqqsa
     1321 fnrvigsvss sprqtldydd eetdsdedvr etygydikcl sgtis
//
LOCUS       XP_053933025             671 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium- and chloride-dependent GABA transporter 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053933025
VERSION     XP_053933025.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077050.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..671
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..671
                     /product="sodium- and chloride-dependent GABA transporter
                     2 isoform X1"
                     /calculated_mol_wt=75467
     Region          103..645
                     /region_name="SLC6sbd_GAT2"
                     /note="Na(+)- and Cl(-)-dependent GABA transporter 2;
                     solute-binding domain; cd11507"
                     /db_xref="CDD:271396"
     Site            order(118,121,457,460..461)
                     /site_type="other"
                     /note="Na binding site 2 [ion binding]"
                     /db_xref="CDD:271396"
     Site            order(119..120,122..125,200,359..360,365,367,461,464..465)
                     /site_type="other"
                     /note="putative substrate binding site 1 [chemical
                     binding]"
                     /db_xref="CDD:271396"
     Site            order(120,125,360,392)
                     /site_type="other"
                     /note="Na binding site 1 [ion binding]"
                     /db_xref="CDD:271396"
     Site            order(127..128,199,203,206,426,430)
                     /site_type="other"
                     /note="putative substrate binding site 2 [chemical
                     binding]"
                     /db_xref="CDD:271396"
     CDS             1..671
                     /gene="SLC6A13"
                     /coded_by="XM_054077050.1:496..2511"
                     /db_xref="GeneID:104055910"
ORIGIN      
        1 mwegcqhqyc hlpalvasgr rcsaatsqhl svlplslpsa raptapstsp nfcliawlvl
       61 nitketpseg gmdyrvpgai sngetvpahp dmerdkedrt lergqwnnkl eyvlsvagei
      121 iglgnvwrfp ylcyknggga ffipyliflf tcgipvffle talgqytsqg gvtawrricp
      181 lfegigyasq vivillnfyy iivlawalfy lfssftinlp wgscdhewnt gncmelqran
      241 stfnvtnena tspviefwer rvlkisdgiq hlgslrwela lclllawiic yfciwkgvks
      301 tgkvvyftat fpylmlivll irgvslpgas qgilfylypd isrlgdpqvw mdagtqiffs
      361 yaiclgclta lgsynkyhnn cyrdcvalcf lnsgtsfvag faifsilgfm akeqgvpiae
      421 vaesgpglaf iaypravvml pfsplwacff flmvvllgld sqfvcveslv talvdmypti
      481 frkknrretl illvsilsyl vglvmltegg myvfqlfdyy aasgmcllfv aifetlciaw
      541 vygaerfydn vedmigyrpw pvikycwlfi tpavcmatfl fslikytplt ynkkyvypww
      601 gdtlgwllal ssmvciplwi vyklstikgs lrerlrqltc pledlhsrlg tgqplptrag
      661 llmmtelesh c
//
LOCUS       XP_053933034             649 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium- and chloride-dependent GABA transporter 2 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053933034
VERSION     XP_053933034.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077059.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..649
                     /product="sodium- and chloride-dependent GABA transporter
                     2 isoform X2"
                     /calculated_mol_wt=73254
     Region          81..623
                     /region_name="SLC6sbd_GAT2"
                     /note="Na(+)- and Cl(-)-dependent GABA transporter 2;
                     solute-binding domain; cd11507"
                     /db_xref="CDD:271396"
     Site            order(96,99,435,438..439)
                     /site_type="other"
                     /note="Na binding site 2 [ion binding]"
                     /db_xref="CDD:271396"
     Site            order(97..98,100..103,178,337..338,343,345,439,442..443)
                     /site_type="other"
                     /note="putative substrate binding site 1 [chemical
                     binding]"
                     /db_xref="CDD:271396"
     Site            order(98,103,338,370)
                     /site_type="other"
                     /note="Na binding site 1 [ion binding]"
                     /db_xref="CDD:271396"
     Site            order(105..106,177,181,184,404,408)
                     /site_type="other"
                     /note="putative substrate binding site 2 [chemical
                     binding]"
                     /db_xref="CDD:271396"
     CDS             1..649
                     /gene="SLC6A13"
                     /coded_by="XM_054077059.1:496..2445"
                     /db_xref="GeneID:104055910"
ORIGIN      
        1 mwegcqhqyc hlpalvasgr rcsaatspnf cliawlvlni tketpseggm dyrvpgaisn
       61 getvpahpdm erdkedrtle rgqwnnkley vlsvageiig lgnvwrfpyl cykngggaff
      121 ipyliflftc gipvffleta lgqytsqggv tawrricplf egigyasqvi villnfyyii
      181 vlawalfylf ssftinlpwg scdhewntgn cmelqranst fnvtnenats pviefwerrv
      241 lkisdgiqhl gslrwelalc lllawiicyf ciwkgvkstg kvvyftatfp ylmlivllir
      301 gvslpgasqg ilfylypdis rlgdpqvwmd agtqiffsya iclgcltalg synkyhnncy
      361 rdcvalcfln sgtsfvagfa ifsilgfmak eqgvpiaeva esgpglafia ypravvmlpf
      421 splwacfffl mvvllgldsq fvcveslvta lvdmyptifr kknrretlil lvsilsylvg
      481 lvmlteggmy vfqlfdyyaa sgmcllfvai fetlciawvy gaerfydnve dmigyrpwpv
      541 ikycwlfitp avcmatflfs likytpltyn kkyvypwwgd tlgwllalss mvciplwivy
      601 klstikgslr erlrqltcpl edlhsrlgtg qplptragll mmteleshc
//
LOCUS       XP_053933043             555 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium- and chloride-dependent GABA transporter 2 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053933043
VERSION     XP_053933043.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077068.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..555
                     /product="sodium- and chloride-dependent GABA transporter
                     2 isoform X3"
                     /calculated_mol_wt=62923
     Region          32..529
                     /region_name="SLC5-6-like_sbd"
                     /note="Solute carrier families 5 and 6-like; solute
                     binding domain; cl00456"
                     /db_xref="CDD:444915"
     Site            order(47,50,341,344..345)
                     /site_type="other"
                     /note="Na binding site [ion binding]"
                     /db_xref="CDD:271356"
     CDS             1..555
                     /gene="SLC6A13"
                     /coded_by="XM_054077068.1:134..1801"
                     /db_xref="GeneID:104055910"
ORIGIN      
        1 mdyrvpgais ngetvpahpd merdkedrtl ergqwnnkle yvlsvageii glgnvwrfpy
       61 lcykngggaf fipyliflft cgipvfflet algqytsqgg vtawrricpl fegigyasqv
      121 ivillnfyyi ivlawalfyl fssftinlpw gscdhewntg ncmelqrans tfnvtnenat
      181 spviefwerr vlkisdgiqh lgslrwelal clllawiicy fciwkgvkst gkvwmdagtq
      241 iffsyaiclg cltalgsynk yhnncyrdcv alcflnsgts fvagfaifsi lgfmakeqgv
      301 piaevaesgp glafiaypra vvmlpfsplw acffflmvvl lgldsqfvcv eslvtalvdm
      361 yptifrkknr retlillvsi lsylvglvml teggmyvfql fdyyaasgmc llfvaifetl
      421 ciawvygaer fydnvedmig yrpwpvikyc wlfitpavcm atflfsliky tpltynkkyv
      481 ypwwgdtlgw llalssmvci plwivyklst ikgslrerlr qltcpledlh srlgtgqplp
      541 tragllmmte leshc
//
LOCUS       XP_053933050             537 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium- and chloride-dependent GABA transporter 2 isoform X4
            [Cuculus canorus].
ACCESSION   XP_053933050
VERSION     XP_053933050.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077075.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..537
                     /product="sodium- and chloride-dependent GABA transporter
                     2 isoform X4"
                     /calculated_mol_wt=60148
     Region          32..472
                     /region_name="SLC5-6-like_sbd"
                     /note="Solute carrier families 5 and 6-like; solute
                     binding domain; cl00456"
                     /db_xref="CDD:444915"
     Site            order(47,50,386,389..390)
                     /site_type="other"
                     /note="Na binding site [ion binding]"
                     /db_xref="CDD:271356"
     CDS             1..537
                     /gene="SLC6A13"
                     /coded_by="XM_054077075.1:134..1747"
                     /db_xref="GeneID:104055910"
ORIGIN      
        1 mdyrvpgais ngetvpahpd merdkedrtl ergqwnnkle yvlsvageii glgnvwrfpy
       61 lcykngggaf fipyliflft cgipvfflet algqytsqgg vtawrricpl fegigyasqv
      121 ivillnfyyi ivlawalfyl fssftinlpw gscdhewntg ncmelqrans tfnvtnenat
      181 spviefwerr vlkisdgiqh lgslrwelal clllawiicy fciwkgvkst gkvvyftatf
      241 pylmlivlli rgvslpgasq gilfylypdi srlgdpqvwm dagtqiffsy aiclgcltal
      301 gsynkyhnnc yrdcvalcfl nsgtsfvagf aifsilgfma keqgvpiaev aesgpglafi
      361 aypravvmlp fsplwacfff lmvvllglds qfvcveslvt alvdmyptif rkknrretli
      421 llvsilsylv glvmlteggm yvfqlfdyya asgmcllfva ifetlciawv ygnlpvfsdq
      481 ihsadlqqev rvpmvgrhpg lavgpllhgv hpsldclqtl hhqrlpqrea ppthlst
//
LOCUS       XP_053933055             600 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium- and chloride-dependent GABA transporter 2 isoform X5
            [Cuculus canorus].
ACCESSION   XP_053933055
VERSION     XP_053933055.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077080.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..600
                     /product="sodium- and chloride-dependent GABA transporter
                     2 isoform X5"
                     /calculated_mol_wt=67924
     Region          32..574
                     /region_name="SLC6sbd_GAT2"
                     /note="Na(+)- and Cl(-)-dependent GABA transporter 2;
                     solute-binding domain; cd11507"
                     /db_xref="CDD:271396"
     Site            order(47,50,386,389..390)
                     /site_type="other"
                     /note="Na binding site 2 [ion binding]"
                     /db_xref="CDD:271396"
     Site            order(48..49,51..54,129,288..289,294,296,390,393..394)
                     /site_type="other"
                     /note="putative substrate binding site 1 [chemical
                     binding]"
                     /db_xref="CDD:271396"
     Site            order(49,54,289,321)
                     /site_type="other"
                     /note="Na binding site 1 [ion binding]"
                     /db_xref="CDD:271396"
     Site            order(56..57,128,132,135,355,359)
                     /site_type="other"
                     /note="putative substrate binding site 2 [chemical
                     binding]"
                     /db_xref="CDD:271396"
     CDS             1..600
                     /gene="SLC6A13"
                     /coded_by="XM_054077080.1:72..1874"
                     /db_xref="GeneID:104055910"
ORIGIN      
        1 mdyrvpgais ngetvpahpd merdkedrtl ergqwnnkle yvlsvageii glgnvwrfpy
       61 lcykngggaf fipyliflft cgipvfflet algqytsqgg vtawrricpl fegigyasqv
      121 ivillnfyyi ivlawalfyl fssftinlpw gscdhewntg ncmelqrans tfnvtnenat
      181 spviefwerr vlkisdgiqh lgslrwelal clllawiicy fciwkgvkst gkvvyftatf
      241 pylmlivlli rgvslpgasq gilfylypdi srlgdpqvwm dagtqiffsy aiclgcltal
      301 gsynkyhnnc yrdcvalcfl nsgtsfvagf aifsilgfma keqgvpiaev aesgpglafi
      361 aypravvmlp fsplwacfff lmvvllglds qfvcveslvt alvdmyptif rkknrretli
      421 llvsilsylv glvmlteggm yvfqlfdyya asgmcllfva ifetlciawv ygaerfydnv
      481 edmigyrpwp vikycwlfit pavcmatflf slikytplty nkkyvypwwg dtlgwllals
      541 smvciplwiv yklstikgsl rerlrqltcp ledlhsrlgt gqplptragl lmmteleshc
//
LOCUS       XP_053933057             600 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium- and chloride-dependent GABA transporter 2 isoform X5
            [Cuculus canorus].
ACCESSION   XP_053933057
VERSION     XP_053933057.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077082.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..600
                     /product="sodium- and chloride-dependent GABA transporter
                     2 isoform X5"
                     /calculated_mol_wt=67924
     Region          32..574
                     /region_name="SLC6sbd_GAT2"
                     /note="Na(+)- and Cl(-)-dependent GABA transporter 2;
                     solute-binding domain; cd11507"
                     /db_xref="CDD:271396"
     Site            order(47,50,386,389..390)
                     /site_type="other"
                     /note="Na binding site 2 [ion binding]"
                     /db_xref="CDD:271396"
     Site            order(48..49,51..54,129,288..289,294,296,390,393..394)
                     /site_type="other"
                     /note="putative substrate binding site 1 [chemical
                     binding]"
                     /db_xref="CDD:271396"
     Site            order(49,54,289,321)
                     /site_type="other"
                     /note="Na binding site 1 [ion binding]"
                     /db_xref="CDD:271396"
     Site            order(56..57,128,132,135,355,359)
                     /site_type="other"
                     /note="putative substrate binding site 2 [chemical
                     binding]"
                     /db_xref="CDD:271396"
     CDS             1..600
                     /gene="SLC6A13"
                     /coded_by="XM_054077082.1:581..2383"
                     /db_xref="GeneID:104055910"
ORIGIN      
        1 mdyrvpgais ngetvpahpd merdkedrtl ergqwnnkle yvlsvageii glgnvwrfpy
       61 lcykngggaf fipyliflft cgipvfflet algqytsqgg vtawrricpl fegigyasqv
      121 ivillnfyyi ivlawalfyl fssftinlpw gscdhewntg ncmelqrans tfnvtnenat
      181 spviefwerr vlkisdgiqh lgslrwelal clllawiicy fciwkgvkst gkvvyftatf
      241 pylmlivlli rgvslpgasq gilfylypdi srlgdpqvwm dagtqiffsy aiclgcltal
      301 gsynkyhnnc yrdcvalcfl nsgtsfvagf aifsilgfma keqgvpiaev aesgpglafi
      361 aypravvmlp fsplwacfff lmvvllglds qfvcveslvt alvdmyptif rkknrretli
      421 llvsilsylv glvmlteggm yvfqlfdyya asgmcllfva ifetlciawv ygaerfydnv
      481 edmigyrpwp vikycwlfit pavcmatflf slikytplty nkkyvypwwg dtlgwllals
      541 smvciplwiv yklstikgsl rerlrqltcp ledlhsrlgt gqplptragl lmmteleshc
//
LOCUS       XP_053933066             493 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 77 [Cuculus canorus].
ACCESSION   XP_053933066
VERSION     XP_053933066.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077091.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..493
                     /product="coiled-coil domain-containing protein 77"
                     /calculated_mol_wt=58013
     Region          <54..163
                     /region_name="COG2433"
                     /note="Possible nuclease of RNase H fold, RuvC/YqgF family
                     [General function prediction only]"
                     /db_xref="CDD:441980"
     Region          72..>401
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..493
                     /gene="CCDC77"
                     /coded_by="XM_054077091.1:31..1512"
                     /db_xref="GeneID:104055924"
ORIGIN      
        1 mnatasragp sprptrlatp hvssryassl spsqedftpl psinehlafl hpsrelleyy
       61 rkkiadfdee hedlvkrler yketydeqhk lqwevrqree eiaelqkals dmqvylfqer
      121 ehvlrlysen drlkireled rkkiqhllal vgadkgeity fhkepphkvt vlqrpiksse
      181 phkrsdtsrt gvkrstskpa aegdklgspq ryhkdsqtll lqvealqaql eeqtqlakeq
      241 vetlledrri qmeeaqvqhq rdqdkiktit dklhktqnll yestrdflql kfdaraneka
      301 wmaekdsllr kldidphqpi sresgrakkq rdtkemlrad dgawklhsre iktlqeklmq
      361 eqrlsnmyre qcvtlegela rvreegdagr elfkersekm gkrlklvtqr yealekrrnm
      421 evegfkndik hlrqklkdve kqlfkvtlni gpdqdlailh evrqgnrltr kiqedlknlk
      481 akiyglenel ric
//
LOCUS       XP_053933072             493 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 77 [Cuculus canorus].
ACCESSION   XP_053933072
VERSION     XP_053933072.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077097.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..493
                     /product="coiled-coil domain-containing protein 77"
                     /calculated_mol_wt=58013
     Region          <54..163
                     /region_name="COG2433"
                     /note="Possible nuclease of RNase H fold, RuvC/YqgF family
                     [General function prediction only]"
                     /db_xref="CDD:441980"
     Region          72..>401
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..493
                     /gene="CCDC77"
                     /coded_by="XM_054077097.1:31..1512"
                     /db_xref="GeneID:104055924"
ORIGIN      
        1 mnatasragp sprptrlatp hvssryassl spsqedftpl psinehlafl hpsrelleyy
       61 rkkiadfdee hedlvkrler yketydeqhk lqwevrqree eiaelqkals dmqvylfqer
      121 ehvlrlysen drlkireled rkkiqhllal vgadkgeity fhkepphkvt vlqrpiksse
      181 phkrsdtsrt gvkrstskpa aegdklgspq ryhkdsqtll lqvealqaql eeqtqlakeq
      241 vetlledrri qmeeaqvqhq rdqdkiktit dklhktqnll yestrdflql kfdaraneka
      301 wmaekdsllr kldidphqpi sresgrakkq rdtkemlrad dgawklhsre iktlqeklmq
      361 eqrlsnmyre qcvtlegela rvreegdagr elfkersekm gkrlklvtqr yealekrrnm
      421 evegfkndik hlrqklkdve kqlfkvtlni gpdqdlailh evrqgnrltr kiqedlknlk
      481 akiyglenel ric
//
LOCUS       XP_053933079             350 aa            linear   VRT 09-MAR-2023
DEFINITION  neutrophil cytosol factor 4 [Cuculus canorus].
ACCESSION   XP_053933079
VERSION     XP_053933079.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077104.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..350
                     /product="neutrophil cytosol factor 4"
                     /calculated_mol_wt=40724
     Region          19..141
                     /region_name="PX_p40phox"
                     /note="The phosphoinositide binding Phox Homology domain
                     of the p40phox subunit of NADPH oxidase; cd06882"
                     /db_xref="CDD:132792"
     Site            order(33,35..36,38,60,138,141)
                     /site_type="other"
                     /note="PB1 domain interface [polypeptide binding]"
                     /db_xref="CDD:132792"
     Site            order(58..60,92..93,105)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:132792"
     Region          174..227
                     /region_name="SH3_p40phox"
                     /note="Src Homology 3 domain of the p40phox subunit of
                     NADPH oxidase; cd11869"
                     /db_xref="CDD:212802"
     Site            order(179..180,184,188,203..204,206..207,220,223)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212802"
     Site            order(200,213..214,216)
                     /site_type="other"
                     /note="PB1 domain interface [polypeptide binding]"
                     /db_xref="CDD:212802"
     Region          238..329
                     /region_name="PB1_P40"
                     /note="The PB1 domain is essential part of the p40 adaptor
                     protein which plays an important role in activating
                     phagocyte NADPH oxidase during phagocytosis. The PB1
                     domain is a modular domain mediating specific
                     protein-protein interaction which play a role in...;
                     cd06399"
                     /db_xref="CDD:99721"
     Site            order(257,265,273,320,322)
                     /site_type="active"
                     /note="hydrophobic pocket [active]"
                     /db_xref="CDD:99721"
     Site            order(289,291,293,302)
                     /site_type="other"
                     /note="PB1 interaction site [polypeptide binding]"
                     /db_xref="CDD:99721"
     CDS             1..350
                     /gene="NCF4"
                     /coded_by="XM_054077104.1:331..1383"
                     /db_xref="GeneID:104065858"
ORIGIN      
        1 mslprqlrek sdfdqlpddv pisaniadie ekkgftnyym fvievkvkgg grylifrryr
       61 qfydlhtkle erygpeskns pftctlpilp gkvyigakre iaesripiln vyiknllclp
      121 awvlmdeevr lffyhstfds eqvphrlrrl rprtrrvksi spqvpvfdrm aapraealfd
      181 fsgtnklels fkkgdliyll srvnkdwleg tagdttgifp cafvkiikdl pqqedtvnkv
      241 rcyyhdetvs tirdisveed lssipsfkdl melmrqefdq ddivlnyrdl dgdlirllsd
      301 qdvelmvsls rrkpsrkhff pwelhithkd dlnvyntspe igatqtvrai
//
LOCUS       XP_053933088             350 aa            linear   VRT 09-MAR-2023
DEFINITION  neutrophil cytosol factor 4 [Cuculus canorus].
ACCESSION   XP_053933088
VERSION     XP_053933088.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077113.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..350
                     /product="neutrophil cytosol factor 4"
                     /calculated_mol_wt=40724
     Region          19..141
                     /region_name="PX_p40phox"
                     /note="The phosphoinositide binding Phox Homology domain
                     of the p40phox subunit of NADPH oxidase; cd06882"
                     /db_xref="CDD:132792"
     Site            order(33,35..36,38,60,138,141)
                     /site_type="other"
                     /note="PB1 domain interface [polypeptide binding]"
                     /db_xref="CDD:132792"
     Site            order(58..60,92..93,105)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:132792"
     Region          174..227
                     /region_name="SH3_p40phox"
                     /note="Src Homology 3 domain of the p40phox subunit of
                     NADPH oxidase; cd11869"
                     /db_xref="CDD:212802"
     Site            order(179..180,184,188,203..204,206..207,220,223)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212802"
     Site            order(200,213..214,216)
                     /site_type="other"
                     /note="PB1 domain interface [polypeptide binding]"
                     /db_xref="CDD:212802"
     Region          238..329
                     /region_name="PB1_P40"
                     /note="The PB1 domain is essential part of the p40 adaptor
                     protein which plays an important role in activating
                     phagocyte NADPH oxidase during phagocytosis. The PB1
                     domain is a modular domain mediating specific
                     protein-protein interaction which play a role in...;
                     cd06399"
                     /db_xref="CDD:99721"
     Site            order(257,265,273,320,322)
                     /site_type="active"
                     /note="hydrophobic pocket [active]"
                     /db_xref="CDD:99721"
     Site            order(289,291,293,302)
                     /site_type="other"
                     /note="PB1 interaction site [polypeptide binding]"
                     /db_xref="CDD:99721"
     CDS             1..350
                     /gene="NCF4"
                     /coded_by="XM_054077113.1:307..1359"
                     /db_xref="GeneID:104065858"
ORIGIN      
        1 mslprqlrek sdfdqlpddv pisaniadie ekkgftnyym fvievkvkgg grylifrryr
       61 qfydlhtkle erygpeskns pftctlpilp gkvyigakre iaesripiln vyiknllclp
      121 awvlmdeevr lffyhstfds eqvphrlrrl rprtrrvksi spqvpvfdrm aapraealfd
      181 fsgtnklels fkkgdliyll srvnkdwleg tagdttgifp cafvkiikdl pqqedtvnkv
      241 rcyyhdetvs tirdisveed lssipsfkdl melmrqefdq ddivlnyrdl dgdlirllsd
      301 qdvelmvsls rrkpsrkhff pwelhithkd dlnvyntspe igatqtvrai
//
LOCUS       XP_009566680             110 aa            linear   VRT 09-MAR-2023
DEFINITION  parvalbumin alpha isoform X1 [Cuculus canorus].
ACCESSION   XP_009566680
VERSION     XP_009566680.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568385.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..110
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..110
                     /product="parvalbumin alpha isoform X1"
                     /calculated_mol_wt=11942
     Region          9..109
                     /region_name="EFh_parvalbumin_alpha"
                     /note="EF-hand, calcium binding motif, found in
                     alpha-parvalbumin; cd16254"
                     /db_xref="CDD:319997"
     Region          9..38
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:319997"
     Region          43..72
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:319997"
     Site            order(52,54,56,60,63,91,93,95,102)
                     /site_type="other"
                     /note="Ca binding site [ion binding]"
                     /db_xref="CDD:319997"
     Region          82..109
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:319997"
     CDS             1..110
                     /gene="PVALB"
                     /coded_by="XM_009568385.2:144..476"
                     /db_xref="GeneID:104065857"
ORIGIN      
        1 mamtdllsae dikkavgafs aaesfnykkf femvglkkks pedvkkvfhi ldkdrsgfie
       61 edelkfvlkg ftpdgrdlsd ketkallaag dkdgdgkiga defatmvaes
//
LOCUS       XP_053933108             110 aa            linear   VRT 09-MAR-2023
DEFINITION  parvalbumin alpha isoform X1 [Cuculus canorus].
ACCESSION   XP_053933108
VERSION     XP_053933108.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077133.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..110
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..110
                     /product="parvalbumin alpha isoform X1"
                     /calculated_mol_wt=11942
     Region          9..109
                     /region_name="EFh_parvalbumin_alpha"
                     /note="EF-hand, calcium binding motif, found in
                     alpha-parvalbumin; cd16254"
                     /db_xref="CDD:319997"
     Region          9..38
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:319997"
     Region          43..72
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:319997"
     Site            order(52,54,56,60,63,91,93,95,102)
                     /site_type="other"
                     /note="Ca binding site [ion binding]"
                     /db_xref="CDD:319997"
     Region          82..109
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:319997"
     CDS             1..110
                     /gene="PVALB"
                     /coded_by="XM_054077133.1:108..440"
                     /db_xref="GeneID:104065857"
ORIGIN      
        1 mamtdllsae dikkavgafs aaesfnykkf femvglkkks pedvkkvfhi ldkdrsgfie
       61 edelkfvlkg ftpdgrdlsd ketkallaag dkdgdgkiga defatmvaes
//
LOCUS       XP_053933116             109 aa            linear   VRT 09-MAR-2023
DEFINITION  parvalbumin alpha isoform X2 [Cuculus canorus].
ACCESSION   XP_053933116
VERSION     XP_053933116.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077141.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..109
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..109
                     /product="parvalbumin alpha isoform X2"
                     /calculated_mol_wt=11768
     Region          9..101
                     /region_name="EFh_parvalbumin_alpha"
                     /note="EF-hand, calcium binding motif, found in
                     alpha-parvalbumin; cd16254"
                     /db_xref="CDD:319997"
     Region          9..38
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:319997"
     Region          43..72
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:319997"
     Site            order(52,54,56,60,63,91,93,95)
                     /site_type="other"
                     /note="Ca binding site [ion binding]"
                     /db_xref="CDD:319997"
     CDS             1..109
                     /gene="PVALB"
                     /coded_by="XM_054077141.1:208..537"
                     /db_xref="GeneID:104065857"
ORIGIN      
        1 mamtdllsae dikkavgafs aaesfnykkf femvglkkks pedvkkvfhi ldkdrsgfie
       61 edelkfvlkg ftpdgrdlsd ketkallaag dkdgdgkiga dansytgka
//
LOCUS       XP_053933123            1168 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 5 isoform X1 [Cuculus canorus].
ACCESSION   XP_053933123
VERSION     XP_053933123.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077148.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1168
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1168
                     /product="C2 domain-containing protein 5 isoform X1"
                     /calculated_mol_wt=128642
     Region          5..114
                     /region_name="C2_KIAA0528-like"
                     /note="C2 domain found in the Human KIAA0528 cDNA clone;
                     cd08688"
                     /db_xref="CDD:176070"
     Region          417..526
                     /region_name="YbjQ"
                     /note="Uncharacterized pentameric protein YbjQ, UPF0145
                     family [Function unknown]; COG0393"
                     /db_xref="CDD:440162"
     CDS             1..1168
                     /gene="C2CD5"
                     /coded_by="XM_054077148.1:164..3670"
                     /db_xref="GeneID:104059594"
ORIGIN      
        1 mpgklkvkiv agrhlpvmdr asdltdafve vkfgnttfkt dvypkslnpq wnsewfkfev
       61 ddeelqdepl qitvldhdty sandaigkvy ididpllyse aatvisgwfp iydtihgirg
      121 einvvvkvdl fndlnrfrqs scgvkffctt sipkcyravi ihgfveelvv nedpeyqwid
      181 rirtprasne arqrlislms gelqrkiglk vlemrgnavv gylqcfdleg esglvvraig
      241 tactldklsn psaflpacns pskemkeipf nedpnpnths sgpstplknq tysfspsksy
      301 srqssssdtd lsltpktapf pqgpriflfp ssptlscdsp hlkkscllls gsslnplhss
      361 hvspvvlrks vsfteellla asgmgsgsag keggpfktll rqqtqsaleq refpfftlts
      421 fppgflvhvg gvvsarsvkl ldrihnpafv gimgntrsyk lldwnsfnsd epetrdawwa
      481 eirqeiksha kalgchavvg ysestsicee vcilsasgta avlnprflqd gtmegcleqr
      541 lswqpdffsi gsekgevdff pqsqdsssll gieeasppgc gfchipydel nmpfpahlty
      601 cyncrkqkvp dvlfttidlp veaivigkgc liqarlcrlk kkaqaeanat sisnllpfme
      661 yevhtqlmnk lklrgmnalf glriqitvge nmlmglasat gvylaalptp ggiqiagktp
      721 ndgtyeqhis hmqkkindti aknkelyein ppelpeeiig spipeprqrs rllrsqsess
      781 devteldlsh gkkdafvlei ddtdamedvh slltdvppps gfyscnteim pginnwtpei
      841 qmftavrvsr lsninltnqt lnknfndlce nllkslyfkl rsmvpcclch vnftvalped
      901 eivqiavtav aitfdknqal qankapteks qqrastdnee qlqfplelss dplasqpfsp
      961 akevlegass htgipatqra tsvdyssfad rcnswielik lkaqtirrgs ikttasldka
     1021 splaegylrh rsfpscanst vsvvkmtpls flpgakitky lgiinmffir ettslreegg
     1081 vsgflhafia evfamvrahv aalggnavvs yimkqcvfme npnknqaqcl invsgdavif
     1141 vreselemlp vqastvvsqp tssgdvtt
//
LOCUS       XP_053933132            1158 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 5 isoform X2 [Cuculus canorus].
ACCESSION   XP_053933132
VERSION     XP_053933132.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077157.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1158
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1158
                     /product="C2 domain-containing protein 5 isoform X2"
                     /calculated_mol_wt=127613
     Region          5..114
                     /region_name="C2_KIAA0528-like"
                     /note="C2 domain found in the Human KIAA0528 cDNA clone;
                     cd08688"
                     /db_xref="CDD:176070"
     Region          417..526
                     /region_name="YbjQ"
                     /note="Uncharacterized pentameric protein YbjQ, UPF0145
                     family [Function unknown]; COG0393"
                     /db_xref="CDD:440162"
     CDS             1..1158
                     /gene="C2CD5"
                     /coded_by="XM_054077157.1:164..3640"
                     /db_xref="GeneID:104059594"
ORIGIN      
        1 mpgklkvkiv agrhlpvmdr asdltdafve vkfgnttfkt dvypkslnpq wnsewfkfev
       61 ddeelqdepl qitvldhdty sandaigkvy ididpllyse aatvisgwfp iydtihgirg
      121 einvvvkvdl fndlnrfrqs scgvkffctt sipkcyravi ihgfveelvv nedpeyqwid
      181 rirtprasne arqrlislms gelqrkiglk vlemrgnavv gylqcfdleg esglvvraig
      241 tactldklsn psaflpacns pskemkeipf nedpnpnths sgpstplknq tysfspsksy
      301 srqssssdtd lsltpktapf pqgpriflfp ssptlscdsp hlkkscllls gsslnplhss
      361 hvspvvlrks vsfteellla asgmgsgsag keggpfktll rqqtqsaleq refpfftlts
      421 fppgflvhvg gvvsarsvkl ldrihnpafv gimgntrsyk lldwnsfnsd epetrdawwa
      481 eirqeiksha kalgchavvg ysestsicee vcilsasgta avlnprflqd gtmegcleqr
      541 lswqpdffsi gsekgevdff pqsqdsssll gieeasppgc gfchipydel nmpfpahlty
      601 cyncrkqkvp dvlfttidlp veaivigkgc liqarlcrlk kkaqaeanat sisnllpfme
      661 yevhtqlmnk lklrgmnalf glriqitvge nmlmglasat gvylaalptp ggiqiagktp
      721 ndgtyeqhis hmqkkindti aknkelyein ppelpeeiig spipeprqrs rllrsqsess
      781 devteldlsh gkkdafvlei ddtdamedvh slltdvppps gfyscnteim pginnwtpei
      841 qmftavrvsr lsninltnqt lnknfndlce nllkslyfkl rsmvpcclch vnftvalped
      901 eivqiavtav aitfdknqal qankapteks qqrastdnee qlqfplelss dplasqpfsp
      961 akevlegass htgipatqrd rcnswielik lkaqtirrgs ikttasldka splaegylrh
     1021 rsfpscanst vsvvkmtpls flpgakitky lgiinmffir ettslreegg vsgflhafia
     1081 evfamvrahv aalggnavvs yimkqcvfme npnknqaqcl invsgdavif vreselemlp
     1141 vqastvvsqp tssgdvtt
//
LOCUS       XP_053933140            1152 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 5 isoform X3 [Cuculus canorus].
ACCESSION   XP_053933140
VERSION     XP_053933140.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077165.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1152
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1152
                     /product="C2 domain-containing protein 5 isoform X3"
                     /calculated_mol_wt=126666
     Region          5..114
                     /region_name="C2_KIAA0528-like"
                     /note="C2 domain found in the Human KIAA0528 cDNA clone;
                     cd08688"
                     /db_xref="CDD:176070"
     Region          417..526
                     /region_name="YbjQ"
                     /note="Uncharacterized pentameric protein YbjQ, UPF0145
                     family [Function unknown]; COG0393"
                     /db_xref="CDD:440162"
     CDS             1..1152
                     /gene="C2CD5"
                     /coded_by="XM_054077165.1:164..3622"
                     /db_xref="GeneID:104059594"
ORIGIN      
        1 mpgklkvkiv agrhlpvmdr asdltdafve vkfgnttfkt dvypkslnpq wnsewfkfev
       61 ddeelqdepl qitvldhdty sandaigkvy ididpllyse aatvisgwfp iydtihgirg
      121 einvvvkvdl fndlnrfrqs scgvkffctt sipkcyravi ihgfveelvv nedpeyqwid
      181 rirtprasne arqrlislms gelqrkiglk vlemrgnavv gylqcfdleg esglvvraig
      241 tactldklsn psaflpacns pskemkeipf nedpnpnths sgpstplknq tysfspsksy
      301 srqssssdtd lsltpktapf pqgpriflfp ssptlscdsp hlkkscllls gsslnplhss
      361 hvspvvlrks vsfteellla asgmgsgsag keggpfktll rqqtqsaleq refpfftlts
      421 fppgflvhvg gvvsarsvkl ldrihnpafv gimgntrsyk lldwnsfnsd epetrdawwa
      481 eirqeiksha kalgchavvg ysestsicee vcilsasgta avlnprflqd gtmegcleqr
      541 lswqpdffsi gsekgevdff pqsqdsssll gieeasppgc gfchipydel nmpfpahlty
      601 cyncrkqkvp dvlfttidlp veaivigkgc liqarlcrlk kkaqaeanat sisnllpfme
      661 yevhtqlmnk lklrgmnalf glriqitvge nmlmglasat gvylaalptp ggiqiagktp
      721 ndgtyeqhis hmqkkindti aknkelyein ppelpeeiig spipeprqrs rllrsqsess
      781 devteldlsh gkkdafvlei ddtdamedvh slltdvppps gfyscnteim pginnwtpei
      841 qmftavrvsr lsninltnqt lnknfndlce nllkslyfkl rsmvpcclch vnftvalped
      901 eivqiavtav aitfdknqal qankapteks qqrastdnee qlqfplelss dplasqpfsp
      961 akevlegass htgipatqrv mksqsgswft agtspeiaas ldkasplaeg ylrhrsfpsc
     1021 anstvsvvkm tplsflpgak itkylgiinm ffirettslr eeggvsgflh afiaevfamv
     1081 rahvaalggn avvsyimkqc vfmenpnknq aqclinvsgd avifvresel emlpvqastv
     1141 vsqptssgdv tt
//
LOCUS       XP_053933147            1148 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 5 isoform X4 [Cuculus canorus].
ACCESSION   XP_053933147
VERSION     XP_053933147.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077172.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1148
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1148
                     /product="C2 domain-containing protein 5 isoform X4"
                     /calculated_mol_wt=126503
     Region          5..114
                     /region_name="C2_KIAA0528-like"
                     /note="C2 domain found in the Human KIAA0528 cDNA clone;
                     cd08688"
                     /db_xref="CDD:176070"
     Region          417..526
                     /region_name="YbjQ"
                     /note="Uncharacterized pentameric protein YbjQ, UPF0145
                     family [Function unknown]; COG0393"
                     /db_xref="CDD:440162"
     CDS             1..1148
                     /gene="C2CD5"
                     /coded_by="XM_054077172.1:164..3610"
                     /db_xref="GeneID:104059594"
ORIGIN      
        1 mpgklkvkiv agrhlpvmdr asdltdafve vkfgnttfkt dvypkslnpq wnsewfkfev
       61 ddeelqdepl qitvldhdty sandaigkvy ididpllyse aatvisgwfp iydtihgirg
      121 einvvvkvdl fndlnrfrqs scgvkffctt sipkcyravi ihgfveelvv nedpeyqwid
      181 rirtprasne arqrlislms gelqrkiglk vlemrgnavv gylqcfdleg esglvvraig
      241 tactldklsn psaflpacns pskemkeipf nedpnpnths sgpstplknq tysfspsksy
      301 srqssssdtd lsltpktapf pqgpriflfp ssptlscdsp hlkkscllls gsslnplhss
      361 hvspvvlrks vsfteellla asgmgsgsag keggpfktll rqqtqsaleq refpfftlts
      421 fppgflvhvg gvvsarsvkl ldrihnpafv gimgntrsyk lldwnsfnsd epetrdawwa
      481 eirqeiksha kalgchavvg ysestsicee vcilsasgta avlnprflqd gtmegcleqr
      541 lswqpdffsi gieeasppgc gfchipydel nmpfpahlty cyncrkqkvp dvlfttidlp
      601 veaivigkgc liqarlcrlk kkaqaeanat sisnllpfme yevhtqlmnk lklrgmnalf
      661 glriqitvge nmlmglasat gvylaalptp ggiqiagktp ndgtyeqhis hmqkkindti
      721 aknkelyein ppelpeeiig spipeprqrs rllrsqsess devteldlsh gkkdafvlei
      781 ddtdamedvh slltdvppps gfyscnteim pginnwtpei qmftavrvsr lsninltnqt
      841 lnknfndlce nllkslyfkl rsmvpcclch vnftvalped eivqiavtav aitfdknqal
      901 qankapteks qqrastdnee qlqfplelss dplasqpfsp akevlegass htgipatqra
      961 tsvdyssfad rcnswielik lkaqtirrgs ikttasldka splaegylrh rsfpscanst
     1021 vsvvkmtpls flpgakitky lgiinmffir ettslreegg vsgflhafia evfamvrahv
     1081 aalggnavvs yimkqcvfme npnknqaqcl invsgdavif vreselemlp vqastvvsqp
     1141 tssgdvtt
//
LOCUS       XP_053933157            1146 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 5 isoform X5 [Cuculus canorus].
ACCESSION   XP_053933157
VERSION     XP_053933157.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077182.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1146
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1146
                     /product="C2 domain-containing protein 5 isoform X5"
                     /calculated_mol_wt=126139
     Region          5..114
                     /region_name="C2_KIAA0528-like"
                     /note="C2 domain found in the Human KIAA0528 cDNA clone;
                     cd08688"
                     /db_xref="CDD:176070"
     CDS             1..1146
                     /gene="C2CD5"
                     /coded_by="XM_054077182.1:164..3604"
                     /db_xref="GeneID:104059594"
ORIGIN      
        1 mpgklkvkiv agrhlpvmdr asdltdafve vkfgnttfkt dvypkslnpq wnsewfkfev
       61 ddeelqdepl qitvldhdty sandaigkvy ididpllyse aatvisgwfp iydtihgirg
      121 einvvvkvdl fndlnrfrqs scgvkffctt sipkcyravi ihgfveelvv nedpeyqwid
      181 rirtprasne arqrlislms gelqrkiglk vlemrgnavv gylqcfdleg esglvvraig
      241 tactldklsn psaflpacns pskemkeipf nedpnpnths sgpstplknq tysfspsksy
      301 srqssssdtd lsltpktapf pqgpriflfp ssptlscdsp hlkkscllls gsslnplhss
      361 hvspvvlrks vsfteellla asgmgsgsag keggpfktll rqqtqsaleq refpfftlts
      421 fppgflvhvg gvvsarsvkl ldrihnpdep etrdawwaei rqeikshaka lgchavvgys
      481 estsiceevc ilsasgtaav lnprflqdgt megcleqrls wqpdffsigs ekgevdffpq
      541 sqdsssllgi eeasppgcgf chipydelnm pfpahltycy ncrkqkvpdv lfttidlpve
      601 aivigkgcli qarlcrlkkk aqaeanatsi snllpfmeye vhtqlmnklk lrgmnalfgl
      661 riqitvgenm lmglasatgv ylaalptpgg iqiagktpnd gtyeqhishm qkkindtiak
      721 nkelyeinpp elpeeiigsp ipeprqrsrl lrsqsessde vteldlshgk kdafvleidd
      781 tdamedvhsl ltdvpppsgf yscnteimpg innwtpeiqm ftavrvsrls ninltnqtln
      841 knfndlcenl lkslyfklrs mvpcclchvn ftvalpedei vqiavtavai tfdknqalqa
      901 nkapteksqq rastdneeql qfplelssdp lasqpfspak evlegassht gipatqrats
      961 vdyssfadrc nswieliklk aqtirrgsik ttasldkasp laegylrhrs fpscanstvs
     1021 vvkmtplsfl pgakitkylg iinmffiret tslreeggvs gflhafiaev famvrahvaa
     1081 lggnavvsyi mkqcvfmenp nknqaqclin vsgdavifvr eselemlpvq astvvsqpts
     1141 sgdvtt
//
LOCUS       XP_053933167            1137 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 5 isoform X6 [Cuculus canorus].
ACCESSION   XP_053933167
VERSION     XP_053933167.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077192.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1137
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1137
                     /product="C2 domain-containing protein 5 isoform X6"
                     /calculated_mol_wt=125225
     Region          5..114
                     /region_name="C2_KIAA0528-like"
                     /note="C2 domain found in the Human KIAA0528 cDNA clone;
                     cd08688"
                     /db_xref="CDD:176070"
     Region          417..526
                     /region_name="YbjQ"
                     /note="Uncharacterized pentameric protein YbjQ, UPF0145
                     family [Function unknown]; COG0393"
                     /db_xref="CDD:440162"
     CDS             1..1137
                     /gene="C2CD5"
                     /coded_by="XM_054077192.1:164..3577"
                     /db_xref="GeneID:104059594"
ORIGIN      
        1 mpgklkvkiv agrhlpvmdr asdltdafve vkfgnttfkt dvypkslnpq wnsewfkfev
       61 ddeelqdepl qitvldhdty sandaigkvy ididpllyse aatvisgwfp iydtihgirg
      121 einvvvkvdl fndlnrfrqs scgvkffctt sipkcyravi ihgfveelvv nedpeyqwid
      181 rirtprasne arqrlislms gelqrkiglk vlemrgnavv gylqcfdleg esglvvraig
      241 tactldklsn psaflpacns pskemkeipf nedpnpnths sgpstplknq tysfspsksy
      301 srqssssdtd lsltpktapf pqgpriflfp ssptlscdsp hlkkscllls gsslnplhss
      361 hvspvvlrks vsfteellla asgmgsgsag keggpfktll rqqtqsaleq refpfftlts
      421 fppgflvhvg gvvsarsvkl ldrihnpafv gimgntrsyk lldwnsfnsd epetrdawwa
      481 eirqeiksha kalgchavvg ysestsicee vcilsasgta avlnprflqd gtmegcleqr
      541 ieeasppgcg fchipydeln mpfpahltyc yncrkqkvpd vlfttidlpv eaivigkgcl
      601 iqarlcrlkk kaqaeanats isnllpfmey evhtqlmnkl klrgmnalfg lriqitvgen
      661 mlmglasatg vylaalptpg giqiagktpn dgtyeqhish mqkkindtia knkelyeinp
      721 pelpeeiigs pipeprqrsr llrsqsessd evteldlshg kkdafvleid dtdamedvhs
      781 lltdvpppsg fyscnteimp ginnwtpeiq mftavrvsrl sninltnqtl nknfndlcen
      841 llkslyfklr smvpcclchv nftvalpede ivqiavtava itfdknqalq ankapteksq
      901 qrastdneeq lqfplelssd plasqpfspa kevlegassh tgipatqrat svdyssfadr
      961 cnswielikl kaqtirrgsi kttasldkas plaegylrhr sfpscanstv svvkmtplsf
     1021 lpgakitkyl giinmffire ttslreeggv sgflhafiae vfamvrahva alggnavvsy
     1081 imkqcvfmen pnknqaqcli nvsgdavifv reselemlpv qastvvsqpt ssgdvtt
//
LOCUS       XP_053933177            1134 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 5 isoform X7 [Cuculus canorus].
ACCESSION   XP_053933177
VERSION     XP_053933177.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077202.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1134
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1134
                     /product="C2 domain-containing protein 5 isoform X7"
                     /calculated_mol_wt=124771
     Region          5..114
                     /region_name="C2_KIAA0528-like"
                     /note="C2 domain found in the Human KIAA0528 cDNA clone;
                     cd08688"
                     /db_xref="CDD:176070"
     Region          417..526
                     /region_name="YbjQ"
                     /note="Uncharacterized pentameric protein YbjQ, UPF0145
                     family [Function unknown]; COG0393"
                     /db_xref="CDD:440162"
     CDS             1..1134
                     /gene="C2CD5"
                     /coded_by="XM_054077202.1:164..3568"
                     /db_xref="GeneID:104059594"
ORIGIN      
        1 mpgklkvkiv agrhlpvmdr asdltdafve vkfgnttfkt dvypkslnpq wnsewfkfev
       61 ddeelqdepl qitvldhdty sandaigkvy ididpllyse aatvisgwfp iydtihgirg
      121 einvvvkvdl fndlnrfrqs scgvkffctt sipkcyravi ihgfveelvv nedpeyqwid
      181 rirtprasne arqrlislms gelqrkiglk vlemrgnavv gylqcfdleg esglvvraig
      241 tactldklsn psaflpacns pskemkeipf nedpnpnths sgpstplknq tysfspsksy
      301 srqssssdtd lsltpktapf pqgpriflfp ssptlscdsp hlkkscllls gsslnplhss
      361 hvspvvlrks vsfteellla asgmgsgsag keggpfktll rqqtqsaleq refpfftlts
      421 fppgflvhvg gvvsarsvkl ldrihnpafv gimgntrsyk lldwnsfnsd epetrdawwa
      481 eirqeiksha kalgchavvg ysestsicee vcilsasgta avlnprflqd gtmegcleqr
      541 lswqpdffsi gsekgevdff pqsqdsssll gieeasppgc gfchipydel nmpfpahlty
      601 cyncrkqkvp dvlfttidlp veaivigkgc liqarlcrlk kkaqaeanat sisnllpfme
      661 yevhtqlmnk lklrgmnalf glriqitvge nmlmglasat gvylaalptp ggiqiagktp
      721 ndgtyeqhis hmqkkindti aknkelyein ppelpeeiig spipeprqrs rllrsqsess
      781 devteldlsh gkkdafvlei ddtdamedvh slltdvppps gfyscnteim pginnwtpei
      841 qmftavrvsr lsninltnqt lnknfndlce nllkslyfkl rsmvpcclch vnftvalped
      901 eivqiavtav aitfdknqal qankapteks qqrastdnee qlqfplelss dplasqpfsp
      961 akevlegass htgipatqra asldkaspla egylrhrsfp scanstvsvv kmtplsflpg
     1021 akitkylgii nmffiretts lreeggvsgf lhafiaevfa mvrahvaalg gnavvsyimk
     1081 qcvfmenpnk nqaqclinvs gdavifvres elemlpvqas tvvsqptssg dvtt
//
LOCUS       XP_053933186            1115 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 5 isoform X8 [Cuculus canorus].
ACCESSION   XP_053933186
VERSION     XP_053933186.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077211.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1115
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1115
                     /product="C2 domain-containing protein 5 isoform X8"
                     /calculated_mol_wt=122722
     Region          5..114
                     /region_name="C2_KIAA0528-like"
                     /note="C2 domain found in the Human KIAA0528 cDNA clone;
                     cd08688"
                     /db_xref="CDD:176070"
     CDS             1..1115
                     /gene="C2CD5"
                     /coded_by="XM_054077211.1:164..3511"
                     /db_xref="GeneID:104059594"
ORIGIN      
        1 mpgklkvkiv agrhlpvmdr asdltdafve vkfgnttfkt dvypkslnpq wnsewfkfev
       61 ddeelqdepl qitvldhdty sandaigkvy ididpllyse aatvisgwfp iydtihgirg
      121 einvvvkvdl fndlnrfrqs scgvkffctt sipkcyravi ihgfveelvv nedpeyqwid
      181 rirtprasne arqrlislms gelqrkiglk vlemrgnavv gylqcfdleg esglvvraig
      241 tactldklsn psaflpacns pskemkeipf nedpnpnths sgpstplknq tysfspsksy
      301 srqssssdtd lsltpktapf pqgpriflfp ssptlscdsp hlkkscllls gsslnplhss
      361 hvspvvlrks vsfteellla asgmgsgsag keggpfktll rqqtqsaleq refpfftlts
      421 fppgflvhvg gvvsarsvkl ldrihnpdep etrdawwaei rqeikshaka lgchavvgys
      481 estsiceevc ilsasgtaav lnprflqdgt megcleqrie easppgcgfc hipydelnmp
      541 fpahltycyn crkqkvpdvl fttidlpvea ivigkgcliq arlcrlkkka qaeanatsis
      601 nllpfmeyev htqlmnklkl rgmnalfglr iqitvgenml mglasatgvy laalptpggi
      661 qiagktpndg tyeqhishmq kkindtiakn kelyeinppe lpeeiigspi peprqrsrll
      721 rsqsessdev teldlshgkk dafvleiddt damedvhsll tdvpppsgfy scnteimpgi
      781 nnwtpeiqmf tavrvsrlsn inltnqtlnk nfndlcenll kslyfklrsm vpcclchvnf
      841 tvalpedeiv qiavtavait fdknqalqan kapteksqqr astdneeqlq fplelssdpl
      901 asqpfspake vlegasshtg ipatqratsv dyssfadrcn swieliklka qtirrgsikt
      961 tasldkaspl aegylrhrsf pscanstvsv vkmtplsflp gakitkylgi inmffirett
     1021 slreeggvsg flhafiaevf amvrahvaal ggnavvsyim kqcvfmenpn knqaqclinv
     1081 sgdavifvre selemlpvqa stvvsqptss gdvtt
//
LOCUS       XP_053933196            1103 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 5 isoform X9 [Cuculus canorus].
ACCESSION   XP_053933196
VERSION     XP_053933196.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077221.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1103
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1103
                     /product="C2 domain-containing protein 5 isoform X9"
                     /calculated_mol_wt=121730
     Region          5..114
                     /region_name="C2_KIAA0528-like"
                     /note="C2 domain found in the Human KIAA0528 cDNA clone;
                     cd08688"
                     /db_xref="CDD:176070"
     Region          352..461
                     /region_name="YbjQ"
                     /note="Uncharacterized pentameric protein YbjQ, UPF0145
                     family [Function unknown]; COG0393"
                     /db_xref="CDD:440162"
     CDS             1..1103
                     /gene="C2CD5"
                     /coded_by="XM_054077221.1:164..3475"
                     /db_xref="GeneID:104059594"
ORIGIN      
        1 mpgklkvkiv agrhlpvmdr asdltdafve vkfgnttfkt dvypkslnpq wnsewfkfev
       61 ddeelqdepl qitvldhdty sandaigkvy ididpllyse aatvisgwfp iydtihgirg
      121 einvvvkvdl fndlnrfrqs scgvkffctt sipkcyravi ihgfveelvv nedpeyqwid
      181 rirtprasne arqrlislms gelqrkiglk vlemrgnavv gylqcfdleg esglvvraig
      241 tactldklsn psaflpacns pskemkeipf nedpnpnths sgpstplknq tysfspsksy
      301 srqssssdtd lsltpktgmg sgsagkeggp fktllrqqtq saleqrefpf ftltsfppgf
      361 lvhvggvvsa rsvklldrih npafvgimgn trsyklldwn sfnsdepetr dawwaeirqe
      421 ikshakalgc havvgysest siceevcils asgtaavlnp rflqdgtmeg cleqrlswqp
      481 dffsigsekg evdffpqsqd sssllgieea sppgcgfchi pydelnmpfp ahltycyncr
      541 kqkvpdvlft tidlpveaiv igkgcliqar lcrlkkkaqa eanatsisnl lpfmeyevht
      601 qlmnklklrg mnalfglriq itvgenmlmg lasatgvyla alptpggiqi agktpndgty
      661 eqhishmqkk indtiaknke lyeinppelp eeiigspipe prqrsrllrs qsessdevte
      721 ldlshgkkda fvleiddtda medvhslltd vpppsgfysc nteimpginn wtpeiqmfta
      781 vrvsrlsnin ltnqtlnknf ndlcenllks lyfklrsmvp cclchvnftv alpedeivqi
      841 avtavaitfd knqalqanka pteksqqras tdneeqlqfp lelssdplas qpfspakevl
      901 egasshtgip atqratsvdy ssfadrcnsw ieliklkaqt irrgsiktta sldkasplae
      961 gylrhrsfps canstvsvvk mtplsflpga kitkylgiin mffirettsl reeggvsgfl
     1021 hafiaevfam vrahvaalgg navvsyimkq cvfmenpnkn qaqclinvsg davifvrese
     1081 lemlpvqast vvsqptssgd vtt
//
LOCUS       XP_053933206            1094 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 5 isoform X10 [Cuculus canorus].
ACCESSION   XP_053933206
VERSION     XP_053933206.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077231.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1094
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1094
                     /product="C2 domain-containing protein 5 isoform X10"
                     /calculated_mol_wt=120697
     Region          5..114
                     /region_name="C2_KIAA0528-like"
                     /note="C2 domain found in the Human KIAA0528 cDNA clone;
                     cd08688"
                     /db_xref="CDD:176070"
     Region          343..452
                     /region_name="YbjQ"
                     /note="Uncharacterized pentameric protein YbjQ, UPF0145
                     family [Function unknown]; COG0393"
                     /db_xref="CDD:440162"
     CDS             1..1094
                     /gene="C2CD5"
                     /coded_by="XM_054077231.1:164..3448"
                     /db_xref="GeneID:104059594"
ORIGIN      
        1 mpgklkvkiv agrhlpvmdr asdltdafve vkfgnttfkt dvypkslnpq wnsewfkfev
       61 ddeelqdepl qitvldhdty sandaigkvy ididpllyse aatvisgwfp iydtihgirg
      121 einvvvkvdl fndlnrfrqs scgvkffctt sipkcyravi ihgfveelvv nedpeyqwid
      181 rirtprasne arqrlislms gelqrkiglk vlemrgnavv gylqcfdleg esglvvraig
      241 tactldklsn psaflpacns pskemkespl vhppshgcrs thnspihtat gsrltqnfsv
      301 svptliytgm gsgsagkegg pfktllrqqt qsaleqrefp fftltsfppg flvhvggvvs
      361 arsvklldri hnpafvgimg ntrsyklldw nsfnsdepet rdawwaeirq eikshakalg
      421 chavvgyses tsiceevcil sasgtaavln prflqdgtme gcleqrlswq pdffsigsek
      481 gevdffpqsq dsssllgiee asppgcgfch ipydelnmpf pahltycync rkqkvpdvlf
      541 ttidlpveai vigkgcliqa rlcrlkkkaq aeanatsisn llpfmeyevh tqlmnklklr
      601 gmnalfglri qitvgenmlm glasatgvyl aalptpggiq iagktpndgt yeqhishmqk
      661 kindtiaknk elyeinppel peeiigspip eprqrsrllr sqsessdevt eldlshgkkd
      721 afvleiddtd amedvhsllt dvpppsgfys cnteimpgin nwtpeiqmft avrvsrlsni
      781 nltnqtlnkn fndlcenllk slyfklrsmv pcclchvnft valpedeivq iavtavaitf
      841 dknqalqank apteksqqra stdneeqlqf plelssdpla sqpfspakev legasshtgi
      901 patqratsvd yssfadrcns wieliklkaq tirrgsiktt asldkaspla egylrhrsfp
      961 scanstvsvv kmtplsflpg akitkylgii nmffiretts lreeggvsgf lhafiaevfa
     1021 mvrahvaalg gnavvsyimk qcvfmenpnk nqaqclinvs gdavifvres elemlpvqas
     1081 tvvsqptssg dvtt
//
LOCUS       XP_053933213            1081 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 5 isoform X11 [Cuculus canorus].
ACCESSION   XP_053933213
VERSION     XP_053933213.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077238.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1081
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1081
                     /product="C2 domain-containing protein 5 isoform X11"
                     /calculated_mol_wt=119227
     Region          5..114
                     /region_name="C2_KIAA0528-like"
                     /note="C2 domain found in the Human KIAA0528 cDNA clone;
                     cd08688"
                     /db_xref="CDD:176070"
     CDS             1..1081
                     /gene="C2CD5"
                     /coded_by="XM_054077238.1:164..3409"
                     /db_xref="GeneID:104059594"
ORIGIN      
        1 mpgklkvkiv agrhlpvmdr asdltdafve vkfgnttfkt dvypkslnpq wnsewfkfev
       61 ddeelqdepl qitvldhdty sandaigkvy ididpllyse aatvisgwfp iydtihgirg
      121 einvvvkvdl fndlnrfrqs scgvkffctt sipkcyravi ihgfveelvv nedpeyqwid
      181 rirtprasne arqrlislms gelqrkiglk vlemrgnavv gylqcfdleg esglvvraig
      241 tactldklsn psaflpacns pskemkeipf nedpnpnths sgpstplknq tysfspsksy
      301 srqssssdtd lsltpktgmg sgsagkeggp fktllrqqtq saleqrefpf ftltsfppgf
      361 lvhvggvvsa rsvklldrih npdepetrda wwaeirqeik shakalgcha vvgysestsi
      421 ceevcilsas gtaavlnprf lqdgtmegcl eqrlswqpdf fsigsekgev dffpqsqdss
      481 sllgieeasp pgcgfchipy delnmpfpah ltycyncrkq kvpdvlftti dlpveaivig
      541 kgcliqarlc rlkkkaqaea natsisnllp fmeyevhtql mnklklrgmn alfglriqit
      601 vgenmlmgla satgvylaal ptpggiqiag ktpndgtyeq hishmqkkin dtiaknkely
      661 einppelpee iigspipepr qrsrllrsqs essdevteld lshgkkdafv leiddtdame
      721 dvhslltdvp ppsgfyscnt eimpginnwt peiqmftavr vsrlsninlt nqtlnknfnd
      781 lcenllksly fklrsmvpcc lchvnftval pedeivqiav tavaitfdkn qalqankapt
      841 eksqqrastd neeqlqfple lssdplasqp fspakevleg asshtgipat qratsvdyss
      901 fadrcnswie liklkaqtir rgsikttasl dkasplaegy lrhrsfpsca nstvsvvkmt
      961 plsflpgaki tkylgiinmf firettslre eggvsgflha fiaevfamvr ahvaalggna
     1021 vvsyimkqcv fmenpnknqa qclinvsgda vifvresele mlpvqastvv sqptssgdvt
     1081 t
//
LOCUS       XP_053933223            1063 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 5 isoform X12 [Cuculus canorus].
ACCESSION   XP_053933223
VERSION     XP_053933223.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077248.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1063
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1063
                     /product="C2 domain-containing protein 5 isoform X12"
                     /calculated_mol_wt=117280
     Region          5..114
                     /region_name="C2_KIAA0528-like"
                     /note="C2 domain found in the Human KIAA0528 cDNA clone;
                     cd08688"
                     /db_xref="CDD:176070"
     Region          343..452
                     /region_name="YbjQ"
                     /note="Uncharacterized pentameric protein YbjQ, UPF0145
                     family [Function unknown]; COG0393"
                     /db_xref="CDD:440162"
     CDS             1..1063
                     /gene="C2CD5"
                     /coded_by="XM_054077248.1:164..3355"
                     /db_xref="GeneID:104059594"
ORIGIN      
        1 mpgklkvkiv agrhlpvmdr asdltdafve vkfgnttfkt dvypkslnpq wnsewfkfev
       61 ddeelqdepl qitvldhdty sandaigkvy ididpllyse aatvisgwfp iydtihgirg
      121 einvvvkvdl fndlnrfrqs scgvkffctt sipkcyravi ihgfveelvv nedpeyqwid
      181 rirtprasne arqrlislms gelqrkiglk vlemrgnavv gylqcfdleg esglvvraig
      241 tactldklsn psaflpacns pskemkespl vhppshgcrs thnspihtat gsrltqnfsv
      301 svptliytgm gsgsagkegg pfktllrqqt qsaleqrefp fftltsfppg flvhvggvvs
      361 arsvklldri hnpafvgimg ntrsyklldw nsfnsdepet rdawwaeirq eikshakalg
      421 chavvgyses tsiceevcil sasgtaavln prflqdgtme gcleqrieea sppgcgfchi
      481 pydelnmpfp ahltycyncr kqkvpdvlft tidlpveaiv igkgcliqar lcrlkkkaqa
      541 eanatsisnl lpfmeyevht qlmnklklrg mnalfglriq itvgenmlmg lasatgvyla
      601 alptpggiqi agktpndgty eqhishmqkk indtiaknke lyeinppelp eeiigspipe
      661 prqrsrllrs qsessdevte ldlshgkkda fvleiddtda medvhslltd vpppsgfysc
      721 nteimpginn wtpeiqmfta vrvsrlsnin ltnqtlnknf ndlcenllks lyfklrsmvp
      781 cclchvnftv alpedeivqi avtavaitfd knqalqanka pteksqqras tdneeqlqfp
      841 lelssdplas qpfspakevl egasshtgip atqratsvdy ssfadrcnsw ieliklkaqt
      901 irrgsiktta sldkasplae gylrhrsfps canstvsvvk mtplsflpga kitkylgiin
      961 mffirettsl reeggvsgfl hafiaevfam vrahvaalgg navvsyimkq cvfmenpnkn
     1021 qaqclinvsg davifvrese lemlpvqast vvsqptssgd vtt
//
LOCUS       XP_053933231            1053 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 5 isoform X13 [Cuculus canorus].
ACCESSION   XP_053933231
VERSION     XP_053933231.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077256.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1053
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1053
                     /product="C2 domain-containing protein 5 isoform X13"
                     /calculated_mol_wt=116251
     Region          5..114
                     /region_name="C2_KIAA0528-like"
                     /note="C2 domain found in the Human KIAA0528 cDNA clone;
                     cd08688"
                     /db_xref="CDD:176070"
     Region          343..452
                     /region_name="YbjQ"
                     /note="Uncharacterized pentameric protein YbjQ, UPF0145
                     family [Function unknown]; COG0393"
                     /db_xref="CDD:440162"
     CDS             1..1053
                     /gene="C2CD5"
                     /coded_by="XM_054077256.1:164..3325"
                     /db_xref="GeneID:104059594"
ORIGIN      
        1 mpgklkvkiv agrhlpvmdr asdltdafve vkfgnttfkt dvypkslnpq wnsewfkfev
       61 ddeelqdepl qitvldhdty sandaigkvy ididpllyse aatvisgwfp iydtihgirg
      121 einvvvkvdl fndlnrfrqs scgvkffctt sipkcyravi ihgfveelvv nedpeyqwid
      181 rirtprasne arqrlislms gelqrkiglk vlemrgnavv gylqcfdleg esglvvraig
      241 tactldklsn psaflpacns pskemkespl vhppshgcrs thnspihtat gsrltqnfsv
      301 svptliytgm gsgsagkegg pfktllrqqt qsaleqrefp fftltsfppg flvhvggvvs
      361 arsvklldri hnpafvgimg ntrsyklldw nsfnsdepet rdawwaeirq eikshakalg
      421 chavvgyses tsiceevcil sasgtaavln prflqdgtme gcleqrieea sppgcgfchi
      481 pydelnmpfp ahltycyncr kqkvpdvlft tidlpveaiv igkgcliqar lcrlkkkaqa
      541 eanatsisnl lpfmeyevht qlmnklklrg mnalfglriq itvgenmlmg lasatgvyla
      601 alptpggiqi agktpndgty eqhishmqkk indtiaknke lyeinppelp eeiigspipe
      661 prqrsrllrs qsessdevte ldlshgkkda fvleiddtda medvhslltd vpppsgfysc
      721 nteimpginn wtpeiqmfta vrvsrlsnin ltnqtlnknf ndlcenllks lyfklrsmvp
      781 cclchvnftv alpedeivqi avtavaitfd knqalqanka pteksqqras tdneeqlqfp
      841 lelssdplas qpfspakevl egasshtgip atqrdrcnsw ieliklkaqt irrgsiktta
      901 sldkasplae gylrhrsfps canstvsvvk mtplsflpga kitkylgiin mffirettsl
      961 reeggvsgfl hafiaevfam vrahvaalgg navvsyimkq cvfmenpnkn qaqclinvsg
     1021 davifvrese lemlpvqast vvsqptssgd vtt
//
LOCUS       XP_053933240            1050 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 5 isoform X14 [Cuculus canorus].
ACCESSION   XP_053933240
VERSION     XP_053933240.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077265.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1050
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1050
                     /product="C2 domain-containing protein 5 isoform X14"
                     /calculated_mol_wt=115810
     Region          5..114
                     /region_name="C2_KIAA0528-like"
                     /note="C2 domain found in the Human KIAA0528 cDNA clone;
                     cd08688"
                     /db_xref="CDD:176070"
     CDS             1..1050
                     /gene="C2CD5"
                     /coded_by="XM_054077265.1:163..3315"
                     /db_xref="GeneID:104059594"
ORIGIN      
        1 mpgklkvkiv agrhlpvmdr asdltdafve vkfgnttfkt dvypkslnpq wnsewfkfev
       61 ddeelqdepl qitvldhdty sandaigkvy ididpllyse aatvisgwfp iydtihgirg
      121 einvvvkvdl fndlnrfrqs scgvkffctt sipkcyravi ihgfveelvv nedpeyqwid
      181 rirtprasne arqrlislms gelqrkiglk vlemrgnavv gylqcfdleg esglvvraig
      241 tactldklsn psaflpacns pskemkeipf nedpnpnths sgpstplknq tysfspsksy
      301 srqssssdtd lsltpktgmg sgsagkeggp fktllrqqtq saleqrefpf ftltsfppgf
      361 lvhvggvvsa rsvklldrih npdepetrda wwaeirqeik shakalgcha vvgysestsi
      421 ceevcilsas gtaavlnprf lqdgtmegcl eqrieeaspp gcgfchipyd elnmpfpahl
      481 tycyncrkqk vpdvlfttid lpveaivigk gcliqarlcr lkkkaqaean atsisnllpf
      541 meyevhtqlm nklklrgmna lfglriqitv genmlmglas atgvylaalp tpggiqiagk
      601 tpndgtyeqh ishmqkkind tiaknkelye inppelpeei igspipeprq rsrllrsqse
      661 ssdevteldl shgkkdafvl eiddtdamed vhslltdvpp psgfyscnte impginnwtp
      721 eiqmftavrv srlsninltn qtlnknfndl cenllkslyf klrsmvpccl chvnftvalp
      781 edeivqiavt avaitfdknq alqankapte ksqqrastdn eeqlqfplel ssdplasqpf
      841 spakevlega sshtgipatq ratsvdyssf adrcnswiel iklkaqtirr gsikttasld
      901 kasplaegyl rhrsfpscan stvsvvkmtp lsflpgakit kylgiinmff irettslree
      961 ggvsgflhaf iaevfamvra hvaalggnav vsyimkqcvf menpnknqaq clinvsgdav
     1021 ifvreselem lpvqastvvs qptssgdvtt
//
LOCUS       XP_053933250            1041 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 5 isoform X15 [Cuculus canorus].
ACCESSION   XP_053933250
VERSION     XP_053933250.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077275.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1041
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1041
                     /product="C2 domain-containing protein 5 isoform X15"
                     /calculated_mol_wt=114777
     Region          5..114
                     /region_name="C2_KIAA0528-like"
                     /note="C2 domain found in the Human KIAA0528 cDNA clone;
                     cd08688"
                     /db_xref="CDD:176070"
     CDS             1..1041
                     /gene="C2CD5"
                     /coded_by="XM_054077275.1:164..3289"
                     /db_xref="GeneID:104059594"
ORIGIN      
        1 mpgklkvkiv agrhlpvmdr asdltdafve vkfgnttfkt dvypkslnpq wnsewfkfev
       61 ddeelqdepl qitvldhdty sandaigkvy ididpllyse aatvisgwfp iydtihgirg
      121 einvvvkvdl fndlnrfrqs scgvkffctt sipkcyravi ihgfveelvv nedpeyqwid
      181 rirtprasne arqrlislms gelqrkiglk vlemrgnavv gylqcfdleg esglvvraig
      241 tactldklsn psaflpacns pskemkespl vhppshgcrs thnspihtat gsrltqnfsv
      301 svptliytgm gsgsagkegg pfktllrqqt qsaleqrefp fftltsfppg flvhvggvvs
      361 arsvklldri hnpdepetrd awwaeirqei kshakalgch avvgysests iceevcilsa
      421 sgtaavlnpr flqdgtmegc leqrieeasp pgcgfchipy delnmpfpah ltycyncrkq
      481 kvpdvlftti dlpveaivig kgcliqarlc rlkkkaqaea natsisnllp fmeyevhtql
      541 mnklklrgmn alfglriqit vgenmlmgla satgvylaal ptpggiqiag ktpndgtyeq
      601 hishmqkkin dtiaknkely einppelpee iigspipepr qrsrllrsqs essdevteld
      661 lshgkkdafv leiddtdame dvhslltdvp ppsgfyscnt eimpginnwt peiqmftavr
      721 vsrlsninlt nqtlnknfnd lcenllksly fklrsmvpcc lchvnftval pedeivqiav
      781 tavaitfdkn qalqankapt eksqqrastd neeqlqfple lssdplasqp fspakevleg
      841 asshtgipat qratsvdyss fadrcnswie liklkaqtir rgsikttasl dkasplaegy
      901 lrhrsfpsca nstvsvvkmt plsflpgaki tkylgiinmf firettslre eggvsgflha
      961 fiaevfamvr ahvaalggna vvsyimkqcv fmenpnknqa qclinvsgda vifvresele
     1021 mlpvqastvv sqptssgdvt t
//
LOCUS       XP_053933258            1040 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 5 isoform X16 [Cuculus canorus].
ACCESSION   XP_053933258
VERSION     XP_053933258.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077283.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1040
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1040
                     /product="C2 domain-containing protein 5 isoform X16"
                     /calculated_mol_wt=114781
     Region          5..114
                     /region_name="C2_KIAA0528-like"
                     /note="C2 domain found in the Human KIAA0528 cDNA clone;
                     cd08688"
                     /db_xref="CDD:176070"
     CDS             1..1040
                     /gene="C2CD5"
                     /coded_by="XM_054077283.1:163..3285"
                     /db_xref="GeneID:104059594"
ORIGIN      
        1 mpgklkvkiv agrhlpvmdr asdltdafve vkfgnttfkt dvypkslnpq wnsewfkfev
       61 ddeelqdepl qitvldhdty sandaigkvy ididpllyse aatvisgwfp iydtihgirg
      121 einvvvkvdl fndlnrfrqs scgvkffctt sipkcyravi ihgfveelvv nedpeyqwid
      181 rirtprasne arqrlislms gelqrkiglk vlemrgnavv gylqcfdleg esglvvraig
      241 tactldklsn psaflpacns pskemkeipf nedpnpnths sgpstplknq tysfspsksy
      301 srqssssdtd lsltpktgmg sgsagkeggp fktllrqqtq saleqrefpf ftltsfppgf
      361 lvhvggvvsa rsvklldrih npdepetrda wwaeirqeik shakalgcha vvgysestsi
      421 ceevcilsas gtaavlnprf lqdgtmegcl eqrieeaspp gcgfchipyd elnmpfpahl
      481 tycyncrkqk vpdvlfttid lpveaivigk gcliqarlcr lkkkaqaean atsisnllpf
      541 meyevhtqlm nklklrgmna lfglriqitv genmlmglas atgvylaalp tpggiqiagk
      601 tpndgtyeqh ishmqkkind tiaknkelye inppelpeei igspipeprq rsrllrsqse
      661 ssdevteldl shgkkdafvl eiddtdamed vhslltdvpp psgfyscnte impginnwtp
      721 eiqmftavrv srlsninltn qtlnknfndl cenllkslyf klrsmvpccl chvnftvalp
      781 edeivqiavt avaitfdknq alqankapte ksqqrastdn eeqlqfplel ssdplasqpf
      841 spakevlega sshtgipatq rdrcnswiel iklkaqtirr gsikttasld kasplaegyl
      901 rhrsfpscan stvsvvkmtp lsflpgakit kylgiinmff irettslree ggvsgflhaf
      961 iaevfamvra hvaalggnav vsyimkqcvf menpnknqaq clinvsgdav ifvreselem
     1021 lpvqastvvs qptssgdvtt
//
LOCUS       XP_053933267            1031 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 5 isoform X17 [Cuculus canorus].
ACCESSION   XP_053933267
VERSION     XP_053933267.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077292.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1031
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1031
                     /product="C2 domain-containing protein 5 isoform X17"
                     /calculated_mol_wt=113748
     Region          5..114
                     /region_name="C2_KIAA0528-like"
                     /note="C2 domain found in the Human KIAA0528 cDNA clone;
                     cd08688"
                     /db_xref="CDD:176070"
     CDS             1..1031
                     /gene="C2CD5"
                     /coded_by="XM_054077292.1:164..3259"
                     /db_xref="GeneID:104059594"
ORIGIN      
        1 mpgklkvkiv agrhlpvmdr asdltdafve vkfgnttfkt dvypkslnpq wnsewfkfev
       61 ddeelqdepl qitvldhdty sandaigkvy ididpllyse aatvisgwfp iydtihgirg
      121 einvvvkvdl fndlnrfrqs scgvkffctt sipkcyravi ihgfveelvv nedpeyqwid
      181 rirtprasne arqrlislms gelqrkiglk vlemrgnavv gylqcfdleg esglvvraig
      241 tactldklsn psaflpacns pskemkespl vhppshgcrs thnspihtat gsrltqnfsv
      301 svptliytgm gsgsagkegg pfktllrqqt qsaleqrefp fftltsfppg flvhvggvvs
      361 arsvklldri hnpdepetrd awwaeirqei kshakalgch avvgysests iceevcilsa
      421 sgtaavlnpr flqdgtmegc leqrieeasp pgcgfchipy delnmpfpah ltycyncrkq
      481 kvpdvlftti dlpveaivig kgcliqarlc rlkkkaqaea natsisnllp fmeyevhtql
      541 mnklklrgmn alfglriqit vgenmlmgla satgvylaal ptpggiqiag ktpndgtyeq
      601 hishmqkkin dtiaknkely einppelpee iigspipepr qrsrllrsqs essdevteld
      661 lshgkkdafv leiddtdame dvhslltdvp ppsgfyscnt eimpginnwt peiqmftavr
      721 vsrlsninlt nqtlnknfnd lcenllksly fklrsmvpcc lchvnftval pedeivqiav
      781 tavaitfdkn qalqankapt eksqqrastd neeqlqfple lssdplasqp fspakevleg
      841 asshtgipat qrdrcnswie liklkaqtir rgsikttasl dkasplaegy lrhrsfpsca
      901 nstvsvvkmt plsflpgaki tkylgiinmf firettslre eggvsgflha fiaevfamvr
      961 ahvaalggna vvsyimkqcv fmenpnknqa qclinvsgda vifvresele mlpvqastvv
     1021 sqptssgdvt t
//
LOCUS       XP_053933278            1016 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 5 isoform X18 [Cuculus canorus].
ACCESSION   XP_053933278
VERSION     XP_053933278.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077303.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1016
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1016
                     /product="C2 domain-containing protein 5 isoform X18"
                     /calculated_mol_wt=111938
     Region          5..114
                     /region_name="C2_KIAA0528-like"
                     /note="C2 domain found in the Human KIAA0528 cDNA clone;
                     cd08688"
                     /db_xref="CDD:176070"
     CDS             1..1016
                     /gene="C2CD5"
                     /coded_by="XM_054077303.1:163..3213"
                     /db_xref="GeneID:104059594"
ORIGIN      
        1 mpgklkvkiv agrhlpvmdr asdltdafve vkfgnttfkt dvypkslnpq wnsewfkfev
       61 ddeelqdepl qitvldhdty sandaigkvy ididpllyse aatvisgwfp iydtihgirg
      121 einvvvkvdl fndlnrfrqs scgvkffctt sipkcyravi ihgfveelvv nedpeyqwid
      181 rirtprasne arqrlislms gelqrkiglk vlemrgnavv gylqcfdleg esglvvraig
      241 tactldklsn psaflpacns pskemkeipf nedpnpnths sgpstplknq tysfspsksy
      301 srqssssdtd lsltpktgmg sgsagkeggp fktllrqqtq saleqrefpf ftltsfppgf
      361 lvhvggvvsa rsvklldrih npdepetrda wwaeirqeik shakalgcha vvgysestsi
      421 ceevcilsas gtaavlnprf lqdgtmegcl eqrieeaspp gcgfchipyd elnmpfpahl
      481 tycyncrkqk vpdvlfttid lpveaivigk gcliqarlcr lkkkaqaean atsisnllpf
      541 meyevhtqlm nklklrgmna lfglriqitv genmlmglas atgvylaalp tpggiqiagk
      601 tpndgtyeqh ishmqkkind tiaknkelye inppelpeei igspipeprq rsrllrsqse
      661 ssdevteldl shgkkdafvl eiddtdamed vhslltdvpp psgfyscnte impginnwtp
      721 eiqmftavrv srlsninltn qtlnknfndl cenllkslyf klrsmvpccl chvnftvalp
      781 edeivqiavt avaitfdknq alqankapte ksqqrastdn eeqlqfplel ssdplasqpf
      841 spakevlega sshtgipatq raasldkasp laegylrhrs fpscanstvs vvkmtplsfl
      901 pgakitkylg iinmffiret tslreeggvs gflhafiaev famvrahvaa lggnavvsyi
      961 mkqcvfmenp nknqaqclin vsgdavifvr eselemlpvq astvvsqpts sgdvtt
//
LOCUS       XP_053933287             970 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 5 isoform X19 [Cuculus canorus].
ACCESSION   XP_053933287
VERSION     XP_053933287.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077312.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..970
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..970
                     /product="C2 domain-containing protein 5 isoform X19"
                     /calculated_mol_wt=105913
     Region          219..328
                     /region_name="YbjQ"
                     /note="Uncharacterized pentameric protein YbjQ, UPF0145
                     family [Function unknown]; COG0393"
                     /db_xref="CDD:440162"
     CDS             1..970
                     /gene="C2CD5"
                     /coded_by="XM_054077312.1:676..3588"
                     /db_xref="GeneID:104059594"
ORIGIN      
        1 msgelqrkig lkvlemrgna vvgylqcfdl egesglvvra igtactldkl snpsaflpac
       61 nspskemkei pfnedpnpnt hssgpstplk nqtysfspsk sysrqssssd tdlsltpkta
      121 pfpqgprifl fpssptlscd sphlkkscll lsgsslnplh sshvspvvlr ksvsfteell
      181 laasgmgsgs agkeggpfkt llrqqtqsal eqrefpfftl tsfppgflvh vggvvsarsv
      241 klldrihnpa fvgimgntrs yklldwnsfn sdepetrdaw waeirqeiks hakalgchav
      301 vgysestsic eevcilsasg taavlnprfl qdgtmegcle qrlswqpdff sigsekgevd
      361 ffpqsqdsss llgieeaspp gcgfchipyd elnmpfpahl tycyncrkqk vpdvlfttid
      421 lpveaivigk gcliqarlcr lkkkaqaean atsisnllpf meyevhtqlm nklklrgmna
      481 lfglriqitv genmlmglas atgvylaalp tpggiqiagk tpndgtyeqh ishmqkkind
      541 tiaknkelye inppelpeei igspipeprq rsrllrsqse ssdevteldl shgkkdafvl
      601 eiddtdamed vhslltdvpp psgfyscnte impginnwtp eiqmftavrv srlsninltn
      661 qtlnknfndl cenllkslyf klrsmvpccl chvnftvalp edeivqiavt avaitfdknq
      721 alqankapte ksqqrastdn eeqlqfplel ssdplasqpf spakevlega sshtgipatq
      781 ratsvdyssf adrcnswiel iklkaqtirr gsikttasld kasplaegyl rhrsfpscan
      841 stvsvvkmtp lsflpgakit kylgiinmff irettslree ggvsgflhaf iaevfamvra
      901 hvaalggnav vsyimkqcvf menpnknqaq clinvsgdav ifvreselem lpvqastvvs
      961 qptssgdvtt
//
LOCUS       XP_053933302             933 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 5 isoform X20 [Cuculus canorus].
ACCESSION   XP_053933302
VERSION     XP_053933302.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077327.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..933
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..933
                     /product="C2 domain-containing protein 5 isoform X20"
                     /calculated_mol_wt=102328
     Region          182..291
                     /region_name="YbjQ"
                     /note="Uncharacterized pentameric protein YbjQ, UPF0145
                     family [Function unknown]; COG0393"
                     /db_xref="CDD:440162"
     CDS             1..933
                     /gene="C2CD5"
                     /coded_by="XM_054077327.1:170..2971"
                     /db_xref="GeneID:104059594"
ORIGIN      
        1 mpldsqqpns hcywlttyse llcvcshshl hwipfnedpn pnthssgpst plknqtysfs
       61 psksysrqss ssdtdlsltp ktapfpqgpr iflfpssptl scdsphlkks clllsgssln
      121 plhsshvspv vlrksvsfte elllaasgmg sgsagkeggp fktllrqqtq saleqrefpf
      181 ftltsfppgf lvhvggvvsa rsvklldrih npafvgimgn trsyklldwn sfnsdepetr
      241 dawwaeirqe ikshakalgc havvgysest siceevcils asgtaavlnp rflqdgtmeg
      301 cleqrlswqp dffsigsekg evdffpqsqd sssllgieea sppgcgfchi pydelnmpfp
      361 ahltycyncr kqkvpdvlft tidlpveaiv igkgcliqar lcrlkkkaqa eanatsisnl
      421 lpfmeyevht qlmnklklrg mnalfglriq itvgenmlmg lasatgvyla alptpggiqi
      481 agktpndgty eqhishmqkk indtiaknke lyeinppelp eeiigspipe prqrsrllrs
      541 qsessdevte ldlshgkkda fvleiddtda medvhslltd vpppsgfysc nteimpginn
      601 wtpeiqmfta vrvsrlsnin ltnqtlnknf ndlcenllks lyfklrsmvp cclchvnftv
      661 alpedeivqi avtavaitfd knqalqanka pteksqqras tdneeqlqfp lelssdplas
      721 qpfspakevl egasshtgip atqratsvdy ssfadrcnsw ieliklkaqt irrgsiktta
      781 sldkasplae gylrhrsfps canstvsvvk mtplsflpga kitkylgiin mffirettsl
      841 reeggvsgfl hafiaevfam vrahvaalgg navvsyimkq cvfmenpnkn qaqclinvsg
      901 davifvrese lemlpvqast vvsqptssgd vtt
//
LOCUS       XP_053933310             815 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 5 isoform X21 [Cuculus canorus].
ACCESSION   XP_053933310
VERSION     XP_053933310.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077335.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..815
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..815
                     /product="C2 domain-containing protein 5 isoform X21"
                     /calculated_mol_wt=89495
     CDS             1..815
                     /gene="C2CD5"
                     /coded_by="XM_054077335.1:170..2617"
                     /db_xref="GeneID:104059594"
ORIGIN      
        1 mpldsqqpns hcywlttyse llcvcshshl hwipfnedpn pnthssgpst plknqtysfs
       61 psksysrqss ssdtdlsltp ktgmgsgsag keggpfktll rqqtqsaleq refpfftlts
      121 fppgflvhvg gvvsarsvkl ldrihnpdep etrdawwaei rqeikshaka lgchavvgys
      181 estsiceevc ilsasgtaav lnprflqdgt megcleqrie easppgcgfc hipydelnmp
      241 fpahltycyn crkqkvpdvl fttidlpvea ivigkgcliq arlcrlkkka qaeanatsis
      301 nllpfmeyev htqlmnklkl rgmnalfglr iqitvgenml mglasatgvy laalptpggi
      361 qiagktpndg tyeqhishmq kkindtiakn kelyeinppe lpeeiigspi peprqrsrll
      421 rsqsessdev teldlshgkk dafvleiddt damedvhsll tdvpppsgfy scnteimpgi
      481 nnwtpeiqmf tavrvsrlsn inltnqtlnk nfndlcenll kslyfklrsm vpcclchvnf
      541 tvalpedeiv qiavtavait fdknqalqan kapteksqqr astdneeqlq fplelssdpl
      601 asqpfspake vlegasshtg ipatqratsv dyssfadrcn swieliklka qtirrgsikt
      661 tasldkaspl aegylrhrsf pscanstvsv vkmtplsflp gakitkylgi inmffirett
      721 slreeggvsg flhafiaevf amvrahvaal ggnavvsyim kqcvfmenpn knqaqclinv
      781 sgdavifvre selemlpvqa stvvsqptss gdvtt
//
LOCUS       XP_053933320             805 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 5 isoform X22 [Cuculus canorus].
ACCESSION   XP_053933320
VERSION     XP_053933320.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077345.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..805
                     /product="C2 domain-containing protein 5 isoform X22"
                     /calculated_mol_wt=88466
     CDS             1..805
                     /gene="C2CD5"
                     /coded_by="XM_054077345.1:170..2587"
                     /db_xref="GeneID:104059594"
ORIGIN      
        1 mpldsqqpns hcywlttyse llcvcshshl hwipfnedpn pnthssgpst plknqtysfs
       61 psksysrqss ssdtdlsltp ktgmgsgsag keggpfktll rqqtqsaleq refpfftlts
      121 fppgflvhvg gvvsarsvkl ldrihnpdep etrdawwaei rqeikshaka lgchavvgys
      181 estsiceevc ilsasgtaav lnprflqdgt megcleqrie easppgcgfc hipydelnmp
      241 fpahltycyn crkqkvpdvl fttidlpvea ivigkgcliq arlcrlkkka qaeanatsis
      301 nllpfmeyev htqlmnklkl rgmnalfglr iqitvgenml mglasatgvy laalptpggi
      361 qiagktpndg tyeqhishmq kkindtiakn kelyeinppe lpeeiigspi peprqrsrll
      421 rsqsessdev teldlshgkk dafvleiddt damedvhsll tdvpppsgfy scnteimpgi
      481 nnwtpeiqmf tavrvsrlsn inltnqtlnk nfndlcenll kslyfklrsm vpcclchvnf
      541 tvalpedeiv qiavtavait fdknqalqan kapteksqqr astdneeqlq fplelssdpl
      601 asqpfspake vlegasshtg ipatqrdrcn swieliklka qtirrgsikt tasldkaspl
      661 aegylrhrsf pscanstvsv vkmtplsflp gakitkylgi inmffirett slreeggvsg
      721 flhafiaevf amvrahvaal ggnavvsyim kqcvfmenpn knqaqclinv sgdavifvre
      781 selemlpvqa stvvsqptss gdvtt
//
LOCUS       XP_053933325            1186 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 5 isoform X23 [Cuculus canorus].
ACCESSION   XP_053933325
VERSION     XP_053933325.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077350.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1186
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1186
                     /product="C2 domain-containing protein 5 isoform X23"
                     /calculated_mol_wt=130537
     Region          5..114
                     /region_name="C2_KIAA0528-like"
                     /note="C2 domain found in the Human KIAA0528 cDNA clone;
                     cd08688"
                     /db_xref="CDD:176070"
     Region          417..526
                     /region_name="YbjQ"
                     /note="Uncharacterized pentameric protein YbjQ, UPF0145
                     family [Function unknown]; COG0393"
                     /db_xref="CDD:440162"
     CDS             1..1186
                     /gene="C2CD5"
                     /coded_by="XM_054077350.1:164..3724"
                     /db_xref="GeneID:104059594"
ORIGIN      
        1 mpgklkvkiv agrhlpvmdr asdltdafve vkfgnttfkt dvypkslnpq wnsewfkfev
       61 ddeelqdepl qitvldhdty sandaigkvy ididpllyse aatvisgwfp iydtihgirg
      121 einvvvkvdl fndlnrfrqs scgvkffctt sipkcyravi ihgfveelvv nedpeyqwid
      181 rirtprasne arqrlislms gelqrkiglk vlemrgnavv gylqcfdleg esglvvraig
      241 tactldklsn psaflpacns pskemkeipf nedpnpnths sgpstplknq tysfspsksy
      301 srqssssdtd lsltpktapf pqgpriflfp ssptlscdsp hlkkscllls gsslnplhss
      361 hvspvvlrks vsfteellla asgmgsgsag keggpfktll rqqtqsaleq refpfftlts
      421 fppgflvhvg gvvsarsvkl ldrihnpafv gimgntrsyk lldwnsfnsd epetrdawwa
      481 eirqeiksha kalgchavvg ysestsicee vcilsasgta avlnprflqd gtmegcleqr
      541 lswqpdffsi gsekgevdff pqsqdsssll gieeasppgc gfchipydel nmpfpahlty
      601 cyncrkqkvp dvlfttidlp veaivigkgc liqarlcrlk kkaqaeanat sisnllpfme
      661 yevhtqlmnk lklrgmnalf glriqitvge nmlmglasat gvylaalptp ggiqiagktp
      721 ndgtyeqhis hmqkkindti aknkelyein ppelpeeiig spipeprqrs rllrsqsess
      781 devteldlsh gkkdafvlei ddtdamedvh slltdvppps gfyscnteim pginnwtpei
      841 qmftavrvsr lsninltnqt lnknfndlce nllkslyfkl rsmvpcclch vnftvalped
      901 eivqiavtav aitfdknqal qankapteks qqrastdnee qlqfplelss dplasqpfsp
      961 akevlegass htgipatqrv mksqsgswft agtspeiats vdyssfadrc nswieliklk
     1021 aqtirrgsik ttasldkasp laegylrhrs fpscanstvs vvkmtplsfl pgakitkylg
     1081 iinmffiret tslreeggvs gflhafiaev famvrahvaa lggnavvsyi mkqcvfmenp
     1141 nknqaqclin vsgdavifvr eselemlpvq astvvsqpts sgdvtt
//
LOCUS       XP_053933337             363 aa            linear   VRT 09-MAR-2023
DEFINITION  ethanolamine kinase 1 [Cuculus canorus].
ACCESSION   XP_053933337
VERSION     XP_053933337.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077362.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..363
                     /product="ethanolamine kinase 1"
                     /calculated_mol_wt=42086
     Region          49..351
                     /region_name="ETNK_euk"
                     /note="Euykaryotic Ethanolamine kinase; cd05157"
                     /db_xref="CDD:270706"
     Site            order(55,57,59..60,62,76,78,107,119..122,124..126,221,223,
                     225..226,228,239..240,243,259,264)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:270706"
     Site            order(55,60,62,76,78,107,119..122,124..126,225,228,
                     239..240)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270706"
     Site            order(57,59,221,223,226,243,259,264)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:270706"
     Site            order(190..193,196..197,203,207,315,339..340,343,346..347,
                     350..351)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:270706"
     CDS             1..363
                     /gene="ETNK1"
                     /coded_by="XM_054077362.1:150..1241"
                     /db_xref="GeneID:104059203"
ORIGIN      
        1 msnyihvppg spevpkldit vserggpgyr qgalqllrrl rphwrpeevt lqlftdgitn
       61 kligcyvgdi tddvvlvriy gnktellvdr deevksfrvl qahgcapqly ctfnnglcye
      121 fmqgealdpe hvcnpeifrl iarqlakiht ihahngwipk snlwlkmgky fsliptefad
      181 eevnkrflsd ipspqvlqee mawmkerlsn lgspvvlchn dllckniiyn kkrgdvqfid
      241 yeysgynyla ydignhfnef agvnevdysl ypnrklqeqw lrsyleayke ykgfgtevse
      301 kevevlyvqv nqfalashff wglwaliqak ystidfdflg yaivrfnqyf kmklevmtlt
      361 lpe
//
LOCUS       XP_053933348             554 aa            linear   VRT 09-MAR-2023
DEFINITION  suppressor of tumorigenicity 7 protein isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053933348
VERSION     XP_053933348.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077373.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..554
                     /product="suppressor of tumorigenicity 7 protein isoform
                     X1"
                     /calculated_mol_wt=63244
     Region          18..553
                     /region_name="ST7"
                     /note="ST7 protein; pfam04184"
                     /db_xref="CDD:461214"
     CDS             1..554
                     /gene="ST7"
                     /coded_by="XM_054077373.1:39..1703"
                     /db_xref="GeneID:104064323"
ORIGIN      
        1 maeagtgfle qlkscivwsw tylwtlwffi mlflvyilrv plkindnltt vsmflntltp
       61 kfyvaltgts slisglilif ewwyfrkygt sfieqvsvsh lrpllggvdn sapsaasaan
      121 gdadssrqsv seckvwrnpl nlfrgaeynr ytwvtgrepl tyydmnlsaq dhqtfftcdt
      181 dhlrpadaim qkawrernpq arisaaheal elnecatayi llaeeeatti veaeklfkqa
      241 lkagegcyrr sqqlqhhgaq yeaqhrrdtn vlvyikrrla mcarklgrtr eavkmmrdlm
      301 kefpllsmfn ihenlleall elqayadvqa vlakyddisl pksaticyta allkaravsd
      361 kfspeaasrr glstaemnav eaihravefn phvpkyllem kslilppehi lkrgdseaia
      421 yaffhlqhwk rvegalnllh ctwegtfrmi pyplekghlf ypypicteta drellpsfhe
      481 vsvypkkelp ffilftaglc sftamlallt hqfpelmgvf akaflstlfa plnfvmekve
      541 silpsslwhq ltri
//
LOCUS       XP_053933356             527 aa            linear   VRT 09-MAR-2023
DEFINITION  suppressor of tumorigenicity 7 protein isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053933356
VERSION     XP_053933356.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077381.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..527
                     /product="suppressor of tumorigenicity 7 protein isoform
                     X2"
                     /calculated_mol_wt=59664
     Region          24..526
                     /region_name="ST7"
                     /note="ST7 protein; pfam04184"
                     /db_xref="CDD:461214"
     CDS             1..527
                     /gene="ST7"
                     /coded_by="XM_054077381.1:16..1599"
                     /db_xref="GeneID:104064323"
ORIGIN      
        1 mevyhgrhgq aciaadscaa lctvsmflnt ltpkfyvalt gtsslisgli lifewwyfrk
       61 ygtsfieqvs vshlrpllgg vdnsapsaas aangdadssr qsvseckvwr nplnlfrgae
      121 ynrytwvtgr epltyydmnl saqdhqtfft cdtdhlrpad aimqkawrer npqarisaah
      181 ealelnecat ayillaeeea ttiveaeklf kqalkagegc yrrsqqlqhh gaqyeaqhrr
      241 dtnvlvyikr rlamcarklg rtreavkmmr dlmkefplls mfnihenlle allelqayad
      301 vqavlakydd islpksatic ytaallkara vsdkfspeaa srrglstaem naveaihrav
      361 efnphvpkyl lemkslilpp ehilkrgdse aiayaffhlq hwkrvegaln llhctwegtf
      421 rmipyplekg hlfypypict etadrellps fhevsvypkk elpffilfta glcsftamla
      481 llthqfpelm gvfakaflst lfaplnfvme kvesilpssl whqltri
//
LOCUS       XP_053933366             511 aa            linear   VRT 09-MAR-2023
DEFINITION  suppressor of tumorigenicity 7 protein isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053933366
VERSION     XP_053933366.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077391.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..511
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..511
                     /product="suppressor of tumorigenicity 7 protein isoform
                     X3"
                     /calculated_mol_wt=58028
     Region          7..510
                     /region_name="ST7"
                     /note="ST7 protein; pfam04184"
                     /db_xref="CDD:461214"
     CDS             1..511
                     /gene="ST7"
                     /coded_by="XM_054077391.1:374..1909"
                     /db_xref="GeneID:104064323"
ORIGIN      
        1 mfgtesslsm flntltpkfy valtgtssli sglilifeww yfrkygtsfi eqvsvshlrp
       61 llggvdnsap saasaangda dssrqsvsec kvwrnplnlf rgaeynrytw vtgrepltyy
      121 dmnlsaqdhq tfftcdtdhl rpadaimqka wrernpqari saahealeln ecatayilla
      181 eeeattivea eklfkqalka gegcyrrsqq lqhhgaqyea qhrrdtnvlv yikrrlamca
      241 rklgrtreav kmmrdlmkef pllsmfnihe nlleallelq ayadvqavla kyddislpks
      301 aticytaall karavsdkfs peaasrrgls taemnaveai hravefnphv pkyllemksl
      361 ilppehilkr gdseaiayaf fhlqhwkrve galnllhctw egtfrmipyp lekghlfypy
      421 pictetadre llpsfhevsv ypkkelpffi lftaglcsft amlallthqf pelmgvfaka
      481 flstlfapln fvmekvesil psslwhqltr i
//
LOCUS       XP_053933372             502 aa            linear   VRT 09-MAR-2023
DEFINITION  suppressor of tumorigenicity 7 protein isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053933372
VERSION     XP_053933372.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077397.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..502
                     /product="suppressor of tumorigenicity 7 protein isoform
                     X4"
                     /calculated_mol_wt=57088
     Region          1..501
                     /region_name="ST7"
                     /note="ST7 protein; pfam04184"
                     /db_xref="CDD:461214"
     CDS             1..502
                     /gene="ST7"
                     /coded_by="XM_054077397.1:157..1665"
                     /db_xref="GeneID:104064323"
ORIGIN      
        1 mflntltpkf yvaltgtssl isglilifew wyfrkygtsf ieqvsvshlr pllggvdnsa
       61 psaasaangd adssrqsvse ckvwrnplnl frgaeynryt wvtgreplty ydmnlsaqdh
      121 qtfftcdtdh lrpadaimqk awrernpqar isaahealel necatayill aeeeattive
      181 aeklfkqalk agegcyrrsq qlqhhgaqye aqhrrdtnvl vyikrrlamc arklgrtrea
      241 vkmmrdlmke fpllsmfnih enlleallel qayadvqavl akyddislpk saticytaal
      301 lkaravsdkf speaasrrgl staemnavea ihravefnph vpkyllemks lilppehilk
      361 rgdseaiaya ffhlqhwkrv egalnllhct wegtfrmipy plekghlfyp ypictetadr
      421 ellpsfhevs vypkkelpff ilftaglcsf tamlallthq fpelmgvfak aflstlfapl
      481 nfvmekvesi lpsslwhqlt ri
//
LOCUS       XP_053933388             667 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase Midline-1 [Cuculus canorus].
ACCESSION   XP_053933388
VERSION     XP_053933388.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077413.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..667
                     /product="E3 ubiquitin-protein ligase Midline-1"
                     /calculated_mol_wt=75269
     Region          3..74
                     /region_name="RING-HC_MID1"
                     /note="RING finger, HC subclass, found in midline-1 (MID1)
                     and similar proteins; cd16753"
                     /db_xref="CDD:438411"
     Region          115..164
                     /region_name="Bbox1_MID1_C-I"
                     /note="B-box-type 1 zinc finger found in midline-1 (MID1)
                     and similar proteins; cd19836"
                     /db_xref="CDD:380894"
     Region          168..214
                     /region_name="Bbox2_MID1_C-I"
                     /note="B-box-type 2 zinc finger found in midline-1 (MID1)
                     and similar proteins; cd19822"
                     /db_xref="CDD:380880"
     Region          219..344
                     /region_name="CC_brat-like"
                     /note="coiled-coil (CC) domain of Drosophila brain tumor
                     (brat) and similar proteins; cl29238"
                     /db_xref="CDD:475168"
     Region          323..374
                     /region_name="COS"
                     /note="TRIM C-terminal subgroup One Signature domain;
                     pfam18568"
                     /db_xref="CDD:465805"
     Region          381..481
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Region          485..661
                     /region_name="SPRY_PRY_TRIM18"
                     /note="PRY/SPRY domain of TRIM18/MID1, also known as FXY
                     or RNF59; cd12892"
                     /db_xref="CDD:240472"
     CDS             1..667
                     /gene="MID1"
                     /coded_by="XM_054077413.1:1094..3097"
                     /db_xref="GeneID:104054884"
ORIGIN      
        1 metleseltc piclelfedp lllpcahslc fncahrilvs hcatnepves itafqcptcr
       61 yvitlsqrgl dglkrnvtlq niidrfqkas vsgpnspset rrerafdsns msscekvlcq
      121 fcdqdpaqea vktcvtcevs yceeclkath pnkkpftghr liepipdshi rglmclehed
      181 ekvnmycvtd dqlicalckl vgrhrdhqva alserydklk qnlesnltnl ikrnteletl
      241 lakliqtcqh vevnasrqet klmeecdqli eiiqqrrqii gtkikegkvv rlrklaqqia
      301 nckqcierst slisqaeqsl kendharflq taknitervs matassqvli peinlndtfd
      361 tfaldftrek kllecldylt apnpptiree lctasydtit vhwtsddefs vvsyelqyti
      421 ftgqanvvsl cnsadswmiv pnikqnhytv hglqsgtkyi fvvkainqag srssepgklk
      481 tnsqpfkldp ksahrklkvs hdnltverde tsskkshtpe rftsqgsygv agnvfidsgr
      541 hywevvisgs twyaigisyk sapkhewigk nsaswvlcrc nntwvvrhns keipiepaph
      601 lrrvgilldy dngslafyda lnslhlytfd itfgqpvcpt ftvwnkclti itglpipdhl
      661 dsseqla
//
LOCUS       XP_053933397             667 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase Midline-1 [Cuculus canorus].
ACCESSION   XP_053933397
VERSION     XP_053933397.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077422.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..667
                     /product="E3 ubiquitin-protein ligase Midline-1"
                     /calculated_mol_wt=75269
     Region          3..74
                     /region_name="RING-HC_MID1"
                     /note="RING finger, HC subclass, found in midline-1 (MID1)
                     and similar proteins; cd16753"
                     /db_xref="CDD:438411"
     Region          115..164
                     /region_name="Bbox1_MID1_C-I"
                     /note="B-box-type 1 zinc finger found in midline-1 (MID1)
                     and similar proteins; cd19836"
                     /db_xref="CDD:380894"
     Region          168..214
                     /region_name="Bbox2_MID1_C-I"
                     /note="B-box-type 2 zinc finger found in midline-1 (MID1)
                     and similar proteins; cd19822"
                     /db_xref="CDD:380880"
     Region          219..344
                     /region_name="CC_brat-like"
                     /note="coiled-coil (CC) domain of Drosophila brain tumor
                     (brat) and similar proteins; cl29238"
                     /db_xref="CDD:475168"
     Region          323..374
                     /region_name="COS"
                     /note="TRIM C-terminal subgroup One Signature domain;
                     pfam18568"
                     /db_xref="CDD:465805"
     Region          381..481
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Region          485..661
                     /region_name="SPRY_PRY_TRIM18"
                     /note="PRY/SPRY domain of TRIM18/MID1, also known as FXY
                     or RNF59; cd12892"
                     /db_xref="CDD:240472"
     CDS             1..667
                     /gene="MID1"
                     /coded_by="XM_054077422.1:180..2183"
                     /db_xref="GeneID:104054884"
ORIGIN      
        1 metleseltc piclelfedp lllpcahslc fncahrilvs hcatnepves itafqcptcr
       61 yvitlsqrgl dglkrnvtlq niidrfqkas vsgpnspset rrerafdsns msscekvlcq
      121 fcdqdpaqea vktcvtcevs yceeclkath pnkkpftghr liepipdshi rglmclehed
      181 ekvnmycvtd dqlicalckl vgrhrdhqva alserydklk qnlesnltnl ikrnteletl
      241 lakliqtcqh vevnasrqet klmeecdqli eiiqqrrqii gtkikegkvv rlrklaqqia
      301 nckqcierst slisqaeqsl kendharflq taknitervs matassqvli peinlndtfd
      361 tfaldftrek kllecldylt apnpptiree lctasydtit vhwtsddefs vvsyelqyti
      421 ftgqanvvsl cnsadswmiv pnikqnhytv hglqsgtkyi fvvkainqag srssepgklk
      481 tnsqpfkldp ksahrklkvs hdnltverde tsskkshtpe rftsqgsygv agnvfidsgr
      541 hywevvisgs twyaigisyk sapkhewigk nsaswvlcrc nntwvvrhns keipiepaph
      601 lrrvgilldy dngslafyda lnslhlytfd itfgqpvcpt ftvwnkclti itglpipdhl
      661 dsseqla
//
LOCUS       XP_053933405             667 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase Midline-1 [Cuculus canorus].
ACCESSION   XP_053933405
VERSION     XP_053933405.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077430.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..667
                     /product="E3 ubiquitin-protein ligase Midline-1"
                     /calculated_mol_wt=75269
     Region          3..74
                     /region_name="RING-HC_MID1"
                     /note="RING finger, HC subclass, found in midline-1 (MID1)
                     and similar proteins; cd16753"
                     /db_xref="CDD:438411"
     Region          115..164
                     /region_name="Bbox1_MID1_C-I"
                     /note="B-box-type 1 zinc finger found in midline-1 (MID1)
                     and similar proteins; cd19836"
                     /db_xref="CDD:380894"
     Region          168..214
                     /region_name="Bbox2_MID1_C-I"
                     /note="B-box-type 2 zinc finger found in midline-1 (MID1)
                     and similar proteins; cd19822"
                     /db_xref="CDD:380880"
     Region          219..344
                     /region_name="CC_brat-like"
                     /note="coiled-coil (CC) domain of Drosophila brain tumor
                     (brat) and similar proteins; cl29238"
                     /db_xref="CDD:475168"
     Region          323..374
                     /region_name="COS"
                     /note="TRIM C-terminal subgroup One Signature domain;
                     pfam18568"
                     /db_xref="CDD:465805"
     Region          381..481
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Region          485..661
                     /region_name="SPRY_PRY_TRIM18"
                     /note="PRY/SPRY domain of TRIM18/MID1, also known as FXY
                     or RNF59; cd12892"
                     /db_xref="CDD:240472"
     CDS             1..667
                     /gene="MID1"
                     /coded_by="XM_054077430.1:161..2164"
                     /db_xref="GeneID:104054884"
ORIGIN      
        1 metleseltc piclelfedp lllpcahslc fncahrilvs hcatnepves itafqcptcr
       61 yvitlsqrgl dglkrnvtlq niidrfqkas vsgpnspset rrerafdsns msscekvlcq
      121 fcdqdpaqea vktcvtcevs yceeclkath pnkkpftghr liepipdshi rglmclehed
      181 ekvnmycvtd dqlicalckl vgrhrdhqva alserydklk qnlesnltnl ikrnteletl
      241 lakliqtcqh vevnasrqet klmeecdqli eiiqqrrqii gtkikegkvv rlrklaqqia
      301 nckqcierst slisqaeqsl kendharflq taknitervs matassqvli peinlndtfd
      361 tfaldftrek kllecldylt apnpptiree lctasydtit vhwtsddefs vvsyelqyti
      421 ftgqanvvsl cnsadswmiv pnikqnhytv hglqsgtkyi fvvkainqag srssepgklk
      481 tnsqpfkldp ksahrklkvs hdnltverde tsskkshtpe rftsqgsygv agnvfidsgr
      541 hywevvisgs twyaigisyk sapkhewigk nsaswvlcrc nntwvvrhns keipiepaph
      601 lrrvgilldy dngslafyda lnslhlytfd itfgqpvcpt ftvwnkclti itglpipdhl
      661 dsseqla
//
LOCUS       XP_053933414             667 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase Midline-1 [Cuculus canorus].
ACCESSION   XP_053933414
VERSION     XP_053933414.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077439.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..667
                     /product="E3 ubiquitin-protein ligase Midline-1"
                     /calculated_mol_wt=75269
     Region          3..74
                     /region_name="RING-HC_MID1"
                     /note="RING finger, HC subclass, found in midline-1 (MID1)
                     and similar proteins; cd16753"
                     /db_xref="CDD:438411"
     Region          115..164
                     /region_name="Bbox1_MID1_C-I"
                     /note="B-box-type 1 zinc finger found in midline-1 (MID1)
                     and similar proteins; cd19836"
                     /db_xref="CDD:380894"
     Region          168..214
                     /region_name="Bbox2_MID1_C-I"
                     /note="B-box-type 2 zinc finger found in midline-1 (MID1)
                     and similar proteins; cd19822"
                     /db_xref="CDD:380880"
     Region          219..344
                     /region_name="CC_brat-like"
                     /note="coiled-coil (CC) domain of Drosophila brain tumor
                     (brat) and similar proteins; cl29238"
                     /db_xref="CDD:475168"
     Region          323..374
                     /region_name="COS"
                     /note="TRIM C-terminal subgroup One Signature domain;
                     pfam18568"
                     /db_xref="CDD:465805"
     Region          381..481
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Region          485..661
                     /region_name="SPRY_PRY_TRIM18"
                     /note="PRY/SPRY domain of TRIM18/MID1, also known as FXY
                     or RNF59; cd12892"
                     /db_xref="CDD:240472"
     CDS             1..667
                     /gene="MID1"
                     /coded_by="XM_054077439.1:233..2236"
                     /db_xref="GeneID:104054884"
ORIGIN      
        1 metleseltc piclelfedp lllpcahslc fncahrilvs hcatnepves itafqcptcr
       61 yvitlsqrgl dglkrnvtlq niidrfqkas vsgpnspset rrerafdsns msscekvlcq
      121 fcdqdpaqea vktcvtcevs yceeclkath pnkkpftghr liepipdshi rglmclehed
      181 ekvnmycvtd dqlicalckl vgrhrdhqva alserydklk qnlesnltnl ikrnteletl
      241 lakliqtcqh vevnasrqet klmeecdqli eiiqqrrqii gtkikegkvv rlrklaqqia
      301 nckqcierst slisqaeqsl kendharflq taknitervs matassqvli peinlndtfd
      361 tfaldftrek kllecldylt apnpptiree lctasydtit vhwtsddefs vvsyelqyti
      421 ftgqanvvsl cnsadswmiv pnikqnhytv hglqsgtkyi fvvkainqag srssepgklk
      481 tnsqpfkldp ksahrklkvs hdnltverde tsskkshtpe rftsqgsygv agnvfidsgr
      541 hywevvisgs twyaigisyk sapkhewigk nsaswvlcrc nntwvvrhns keipiepaph
      601 lrrvgilldy dngslafyda lnslhlytfd itfgqpvcpt ftvwnkclti itglpipdhl
      661 dsseqla
//
LOCUS       XP_053933421             667 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase Midline-1 [Cuculus canorus].
ACCESSION   XP_053933421
VERSION     XP_053933421.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077446.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..667
                     /product="E3 ubiquitin-protein ligase Midline-1"
                     /calculated_mol_wt=75269
     Region          3..74
                     /region_name="RING-HC_MID1"
                     /note="RING finger, HC subclass, found in midline-1 (MID1)
                     and similar proteins; cd16753"
                     /db_xref="CDD:438411"
     Region          115..164
                     /region_name="Bbox1_MID1_C-I"
                     /note="B-box-type 1 zinc finger found in midline-1 (MID1)
                     and similar proteins; cd19836"
                     /db_xref="CDD:380894"
     Region          168..214
                     /region_name="Bbox2_MID1_C-I"
                     /note="B-box-type 2 zinc finger found in midline-1 (MID1)
                     and similar proteins; cd19822"
                     /db_xref="CDD:380880"
     Region          219..344
                     /region_name="CC_brat-like"
                     /note="coiled-coil (CC) domain of Drosophila brain tumor
                     (brat) and similar proteins; cl29238"
                     /db_xref="CDD:475168"
     Region          323..374
                     /region_name="COS"
                     /note="TRIM C-terminal subgroup One Signature domain;
                     pfam18568"
                     /db_xref="CDD:465805"
     Region          381..481
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Region          485..661
                     /region_name="SPRY_PRY_TRIM18"
                     /note="PRY/SPRY domain of TRIM18/MID1, also known as FXY
                     or RNF59; cd12892"
                     /db_xref="CDD:240472"
     CDS             1..667
                     /gene="MID1"
                     /coded_by="XM_054077446.1:128..2131"
                     /db_xref="GeneID:104054884"
ORIGIN      
        1 metleseltc piclelfedp lllpcahslc fncahrilvs hcatnepves itafqcptcr
       61 yvitlsqrgl dglkrnvtlq niidrfqkas vsgpnspset rrerafdsns msscekvlcq
      121 fcdqdpaqea vktcvtcevs yceeclkath pnkkpftghr liepipdshi rglmclehed
      181 ekvnmycvtd dqlicalckl vgrhrdhqva alserydklk qnlesnltnl ikrnteletl
      241 lakliqtcqh vevnasrqet klmeecdqli eiiqqrrqii gtkikegkvv rlrklaqqia
      301 nckqcierst slisqaeqsl kendharflq taknitervs matassqvli peinlndtfd
      361 tfaldftrek kllecldylt apnpptiree lctasydtit vhwtsddefs vvsyelqyti
      421 ftgqanvvsl cnsadswmiv pnikqnhytv hglqsgtkyi fvvkainqag srssepgklk
      481 tnsqpfkldp ksahrklkvs hdnltverde tsskkshtpe rftsqgsygv agnvfidsgr
      541 hywevvisgs twyaigisyk sapkhewigk nsaswvlcrc nntwvvrhns keipiepaph
      601 lrrvgilldy dngslafyda lnslhlytfd itfgqpvcpt ftvwnkclti itglpipdhl
      661 dsseqla
//
LOCUS       XP_053933431             667 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase Midline-1 [Cuculus canorus].
ACCESSION   XP_053933431
VERSION     XP_053933431.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077456.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..667
                     /product="E3 ubiquitin-protein ligase Midline-1"
                     /calculated_mol_wt=75269
     Region          3..74
                     /region_name="RING-HC_MID1"
                     /note="RING finger, HC subclass, found in midline-1 (MID1)
                     and similar proteins; cd16753"
                     /db_xref="CDD:438411"
     Region          115..164
                     /region_name="Bbox1_MID1_C-I"
                     /note="B-box-type 1 zinc finger found in midline-1 (MID1)
                     and similar proteins; cd19836"
                     /db_xref="CDD:380894"
     Region          168..214
                     /region_name="Bbox2_MID1_C-I"
                     /note="B-box-type 2 zinc finger found in midline-1 (MID1)
                     and similar proteins; cd19822"
                     /db_xref="CDD:380880"
     Region          219..344
                     /region_name="CC_brat-like"
                     /note="coiled-coil (CC) domain of Drosophila brain tumor
                     (brat) and similar proteins; cl29238"
                     /db_xref="CDD:475168"
     Region          323..374
                     /region_name="COS"
                     /note="TRIM C-terminal subgroup One Signature domain;
                     pfam18568"
                     /db_xref="CDD:465805"
     Region          381..481
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Region          485..661
                     /region_name="SPRY_PRY_TRIM18"
                     /note="PRY/SPRY domain of TRIM18/MID1, also known as FXY
                     or RNF59; cd12892"
                     /db_xref="CDD:240472"
     CDS             1..667
                     /gene="MID1"
                     /coded_by="XM_054077456.1:79..2082"
                     /db_xref="GeneID:104054884"
ORIGIN      
        1 metleseltc piclelfedp lllpcahslc fncahrilvs hcatnepves itafqcptcr
       61 yvitlsqrgl dglkrnvtlq niidrfqkas vsgpnspset rrerafdsns msscekvlcq
      121 fcdqdpaqea vktcvtcevs yceeclkath pnkkpftghr liepipdshi rglmclehed
      181 ekvnmycvtd dqlicalckl vgrhrdhqva alserydklk qnlesnltnl ikrnteletl
      241 lakliqtcqh vevnasrqet klmeecdqli eiiqqrrqii gtkikegkvv rlrklaqqia
      301 nckqcierst slisqaeqsl kendharflq taknitervs matassqvli peinlndtfd
      361 tfaldftrek kllecldylt apnpptiree lctasydtit vhwtsddefs vvsyelqyti
      421 ftgqanvvsl cnsadswmiv pnikqnhytv hglqsgtkyi fvvkainqag srssepgklk
      481 tnsqpfkldp ksahrklkvs hdnltverde tsskkshtpe rftsqgsygv agnvfidsgr
      541 hywevvisgs twyaigisyk sapkhewigk nsaswvlcrc nntwvvrhns keipiepaph
      601 lrrvgilldy dngslafyda lnslhlytfd itfgqpvcpt ftvwnkclti itglpipdhl
      661 dsseqla
//
LOCUS       XP_053933446             408 aa            linear   VRT 09-MAR-2023
DEFINITION  G/T mismatch-specific thymine DNA glycosylase isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053933446
VERSION     XP_053933446.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077471.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..408
                     /product="G/T mismatch-specific thymine DNA glycosylase
                     isoform X1"
                     /calculated_mol_wt=45939
     Region          2..327
                     /region_name="mug"
                     /note="mismatch-specific thymine-DNA glycosylate (mug);
                     TIGR00584"
                     /db_xref="CDD:273154"
     Region          136..140
                     /region_name="motif A"
                     /note="motif A [structural motif]"
                     /db_xref="CDD:381679"
     Site            order(137..138,140,153..155,229..231,250,268..269,
                     271..275)
                     /site_type="active"
                     /db_xref="CDD:381679"
     Site            order(162..163,284..285,288)
                     /site_type="other"
                     /note="SUMO-1 interface [polypeptide binding]"
                     /db_xref="CDD:381679"
     CDS             1..408
                     /gene="TDG"
                     /coded_by="XM_054077471.1:80..1306"
                     /db_xref="GeneID:104060224"
ORIGIN      
        1 meaeelgryy aylqqaqafy sfpfhpmmta apnmeimseq ltlegipepn iaeeppkevk
       61 kggrkrkakv tepkqpkkpa akkeksaksk gkqekitdsf kvkrkvdrfn gvseaelltk
      121 tlpdiltfdl diviiginpg lmaaykghhy pgpgnhfwkc lfmsglskeq lnhmddhtlp
      181 hkygigftnm verttpgskd lsskefregg rilmqklqky kpriaafngk ciyeifskev
      241 fgikvknlef glqphkvpdt etlcyvmpss sarcaqfpra qdkvhyyikl kdlrdqlkgi
      301 apntevqevq ytfdlqlaqe dakkmavkee kydpgyeaay ggaycdrapy esepcnfssn
      361 gteasnpqyc qgssfgevpn gqwmtqsfad qipefnagmi reeegssa
//
LOCUS       XP_053933456             382 aa            linear   VRT 09-MAR-2023
DEFINITION  G/T mismatch-specific thymine DNA glycosylase isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053933456
VERSION     XP_053933456.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077481.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..382
                     /product="G/T mismatch-specific thymine DNA glycosylase
                     isoform X2"
                     /calculated_mol_wt=42799
     Region          1..301
                     /region_name="mug"
                     /note="mismatch-specific thymine-DNA glycosylate (mug);
                     TIGR00584"
                     /db_xref="CDD:273154"
     Region          110..114
                     /region_name="motif A"
                     /note="motif A [structural motif]"
                     /db_xref="CDD:381679"
     Site            order(111..112,114,127..129,203..205,224,242..243,
                     245..249)
                     /site_type="active"
                     /db_xref="CDD:381679"
     Site            order(136..137,258..259,262)
                     /site_type="other"
                     /note="SUMO-1 interface [polypeptide binding]"
                     /db_xref="CDD:381679"
     CDS             1..382
                     /gene="TDG"
                     /coded_by="XM_054077481.1:182..1330"
                     /db_xref="GeneID:104060224"
ORIGIN      
        1 mmtaapnmei mseqltlegi pepniaeepp kevkkggrkr kakvtepkqp kkpaakkeks
       61 akskgkqeki tdsfkvkrkv drfngvseae lltktlpdil tfdldiviig inpglmaayk
      121 ghhypgpgnh fwkclfmsgl skeqlnhmdd htlphkygig ftnmverttp gskdlsskef
      181 reggrilmqk lqkykpriaa fngkciyeif skevfgikvk nlefglqphk vpdtetlcyv
      241 mpsssarcaq fpraqdkvhy yiklkdlrdq lkgiapntev qevqytfdlq laqedakkma
      301 vkeekydpgy eaayggaycd rapyesepcn fssngteasn pqycqgssfg evpngqwmtq
      361 sfadqipefn agmireeegs sa
//
LOCUS       XP_009560272             350 aa            linear   VRT 09-MAR-2023
DEFINITION  glycosyltransferase 8 domain-containing protein 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_009560272
VERSION     XP_009560272.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009561977.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..350
                     /product="glycosyltransferase 8 domain-containing protein
                     2 isoform X1"
                     /calculated_mol_wt=40108
     Region          51..336
                     /region_name="Glyco_tranf_GTA_type"
                     /note="Glycosyltransferase family A (GT-A) includes
                     diverse families of glycosyl transferases with a common
                     GT-A type structural fold; cl11394"
                     /db_xref="CDD:472172"
     Site            order(57,59,85,156,158)
                     /site_type="active"
                     /db_xref="CDD:133051"
     CDS             1..350
                     /gene="GLT8D2"
                     /coded_by="XM_009561977.2:379..1431"
                     /db_xref="GeneID:104060211"
ORIGIN      
        1 mallkkinqi lllllvltvc ailynkvhqv ssalkneavd letpeemeee ipvvicaaag
       61 rmgaaiaais siysnteanv lfyivglktt iphirkwien sklkeikfkv vefnpmvlkg
      121 kirqdasrpe llqplnfvrf ylplliqkhe kviyldddii vqgdiqelyd tklapghaaa
      181 fsddcdlpst hemvrsvgmq ntymgfldyr kqairdlgis pstcsfnpgv ivanmtewkh
      241 qritkqlekw mqrnveenly sstlaggvat spmlivfhrk ystinpmwhi rhlgwspdtr
      301 ysehflqeak llhwngrykp wdypsvhtnl wenwfipdps grfkltrpds
//
LOCUS       XP_053933474             319 aa            linear   VRT 09-MAR-2023
DEFINITION  glycosyltransferase 8 domain-containing protein 2 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053933474
VERSION     XP_053933474.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077499.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..319
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..319
                     /product="glycosyltransferase 8 domain-containing protein
                     2 isoform X2"
                     /calculated_mol_wt=36700
     Region          20..305
                     /region_name="Glyco_tranf_GTA_type"
                     /note="Glycosyltransferase family A (GT-A) includes
                     diverse families of glycosyl transferases with a common
                     GT-A type structural fold; cl11394"
                     /db_xref="CDD:472172"
     Site            order(26,28,54,125,127)
                     /site_type="active"
                     /db_xref="CDD:132997"
     CDS             1..319
                     /gene="GLT8D2"
                     /coded_by="XM_054077499.1:298..1257"
                     /db_xref="GeneID:104060211"
ORIGIN      
        1 mrmcigcvdl etpeemeeei pvvicaaagr mgaaiaaiss iysnteanvl fyivglktti
       61 phirkwiens klkeikfkvv efnpmvlkgk irqdasrpel lqplnfvrfy lplliqkhek
      121 viyldddiiv qgdiqelydt klapghaaaf sddcdlpsth emvrsvgmqn tymgfldyrk
      181 qairdlgisp stcsfnpgvi vanmtewkhq ritkqlekwm qrnveenlys stlaggvats
      241 pmlivfhrky stinpmwhir hlgwspdtry sehflqeakl lhwngrykpw dypsvhtnlw
      301 enwfipdpsg rfkltrpds
//
LOCUS       XP_009560286              86 aa            linear   VRT 09-MAR-2023
DEFINITION  protein brawnin [Cuculus canorus].
ACCESSION   XP_009560286
VERSION     XP_009560286.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009561991.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009560286.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..86
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..86
                     /product="protein brawnin"
                     /calculated_mol_wt=9490
     Region          20..65
                     /region_name="DUF4516"
                     /note="Domain of unknown function (DUF4516); pfam14990"
                     /db_xref="CDD:464425"
     CDS             1..86
                     /gene="CUNH12orf73"
                     /coded_by="XM_009561991.2:14..274"
                     /db_xref="GeneID:104060223"
ORIGIN      
        1 mtyfrrvcvv gwwrscpaam pagvpwpvyl kalaasmlam fagaevvhry ylpdlsipei
       61 ppkpgelkte llglkerssk vqtsqq
//
LOCUS       XP_009555375             447 aa            linear   VRT 09-MAR-2023
DEFINITION  tubulin alpha-8 chain isoform X1 [Cuculus canorus].
ACCESSION   XP_009555375
VERSION     XP_009555375.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557080.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..447
                     /product="tubulin alpha-8 chain isoform X1"
                     /calculated_mol_wt=49867
     Region          1..447
                     /region_name="PTZ00335"
                     /note="tubulin alpha chain; Provisional"
                     /db_xref="CDD:185562"
     CDS             1..447
                     /gene="TUBA8"
                     /coded_by="XM_009557080.2:3396..4739"
                     /db_xref="GeneID:104055892"
ORIGIN      
        1 mrecvsihvg qagvqignac welfclehgi qpdgtfktlp dklnyddsft tffnetvtgk
       61 hvpravmvdl eptvvdevra gtfrelfhpe qlitgkedaa nnyarghyti gkesidivld
      121 rvrkladacs glqgflifhs fgggtgsgft sllmerlsvd ygkksklefa iypapqvsta
      181 vvepynsilt thttlehsdc afmvdneaiy dicrrnldie rptytnlnrl isqivssita
      241 slrfdgalnv dltefqtnlv pyprihfplv tyapiissdr ayheqlsvae itsscfepnn
      301 qmvkcdprhg kymaccmlyr gdvvpkevnv aiaaiktkrt iqfvdwcptg fkvginyqpp
      361 tvvpggdlaq vqravcmlsn ttaiaeawar ldhkfdlmya krafvhwyvg egmeegefae
      421 aredlaalek dyeevgtdsf eeendge
//
LOCUS       XP_053933508             381 aa            linear   VRT 09-MAR-2023
DEFINITION  tubulin alpha-8 chain isoform X2 [Cuculus canorus].
ACCESSION   XP_053933508
VERSION     XP_053933508.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077533.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..381
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..381
                     /product="tubulin alpha-8 chain isoform X2"
                     /calculated_mol_wt=42514
     Region          1..381
                     /region_name="PTZ00335"
                     /note="tubulin alpha chain; Provisional"
                     /db_xref="CDD:185562"
     CDS             1..381
                     /gene="TUBA8"
                     /coded_by="XM_054077533.1:3751..4896"
                     /db_xref="GeneID:104055892"
ORIGIN      
        1 mvdleptvvd evragtfrel fhpeqlitgk edaannyarg hytigkesid ivldrvrkla
       61 dacsglqgfl ifhsfgggtg sgftsllmer lsvdygkksk lefaiypapq vstavvepyn
      121 siltthttle hsdcafmvdn eaiydicrrn ldierptytn lnrlisqivs sitaslrfdg
      181 alnvdltefq tnlvpyprih fplvtyapii ssdrayheql svaeitsscf epnnqmvkcd
      241 prhgkymacc mlyrgdvvpk evnvaiaaik tkrtiqfvdw cptgfkvgin yqpptvvpgg
      301 dlaqvqravc mlsnttaiae awarldhkfd lmyakrafvh wyvgegmeeg efaearedla
      361 alekdyeevg tdsfeeendg e
//
LOCUS       XP_053933515             381 aa            linear   VRT 09-MAR-2023
DEFINITION  tubulin alpha-8 chain isoform X2 [Cuculus canorus].
ACCESSION   XP_053933515
VERSION     XP_053933515.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077540.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..381
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..381
                     /product="tubulin alpha-8 chain isoform X2"
                     /calculated_mol_wt=42514
     Region          1..381
                     /region_name="PTZ00335"
                     /note="tubulin alpha chain; Provisional"
                     /db_xref="CDD:185562"
     CDS             1..381
                     /gene="TUBA8"
                     /coded_by="XM_054077540.1:3849..4994"
                     /db_xref="GeneID:104055892"
ORIGIN      
        1 mvdleptvvd evragtfrel fhpeqlitgk edaannyarg hytigkesid ivldrvrkla
       61 dacsglqgfl ifhsfgggtg sgftsllmer lsvdygkksk lefaiypapq vstavvepyn
      121 siltthttle hsdcafmvdn eaiydicrrn ldierptytn lnrlisqivs sitaslrfdg
      181 alnvdltefq tnlvpyprih fplvtyapii ssdrayheql svaeitsscf epnnqmvkcd
      241 prhgkymacc mlyrgdvvpk evnvaiaaik tkrtiqfvdw cptgfkvgin yqpptvvpgg
      301 dlaqvqravc mlsnttaiae awarldhkfd lmyakrafvh wyvgegmeeg efaearedla
      361 alekdyeevg tdsfeeendg e
//
LOCUS       XP_053933522             381 aa            linear   VRT 09-MAR-2023
DEFINITION  tubulin alpha-8 chain isoform X2 [Cuculus canorus].
ACCESSION   XP_053933522
VERSION     XP_053933522.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077547.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..381
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..381
                     /product="tubulin alpha-8 chain isoform X2"
                     /calculated_mol_wt=42514
     Region          1..381
                     /region_name="PTZ00335"
                     /note="tubulin alpha chain; Provisional"
                     /db_xref="CDD:185562"
     CDS             1..381
                     /gene="TUBA8"
                     /coded_by="XM_054077547.1:3280..4425"
                     /db_xref="GeneID:104055892"
ORIGIN      
        1 mvdleptvvd evragtfrel fhpeqlitgk edaannyarg hytigkesid ivldrvrkla
       61 dacsglqgfl ifhsfgggtg sgftsllmer lsvdygkksk lefaiypapq vstavvepyn
      121 siltthttle hsdcafmvdn eaiydicrrn ldierptytn lnrlisqivs sitaslrfdg
      181 alnvdltefq tnlvpyprih fplvtyapii ssdrayheql svaeitsscf epnnqmvkcd
      241 prhgkymacc mlyrgdvvpk evnvaiaaik tkrtiqfvdw cptgfkvgin yqpptvvpgg
      301 dlaqvqravc mlsnttaiae awarldhkfd lmyakrafvh wyvgegmeeg efaearedla
      361 alekdyeevg tdsfeeendg e
//
LOCUS       XP_053933527             381 aa            linear   VRT 09-MAR-2023
DEFINITION  tubulin alpha-8 chain isoform X2 [Cuculus canorus].
ACCESSION   XP_053933527
VERSION     XP_053933527.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077552.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..381
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..381
                     /product="tubulin alpha-8 chain isoform X2"
                     /calculated_mol_wt=42514
     Region          1..381
                     /region_name="PTZ00335"
                     /note="tubulin alpha chain; Provisional"
                     /db_xref="CDD:185562"
     CDS             1..381
                     /gene="TUBA8"
                     /coded_by="XM_054077552.1:3692..4837"
                     /db_xref="GeneID:104055892"
ORIGIN      
        1 mvdleptvvd evragtfrel fhpeqlitgk edaannyarg hytigkesid ivldrvrkla
       61 dacsglqgfl ifhsfgggtg sgftsllmer lsvdygkksk lefaiypapq vstavvepyn
      121 siltthttle hsdcafmvdn eaiydicrrn ldierptytn lnrlisqivs sitaslrfdg
      181 alnvdltefq tnlvpyprih fplvtyapii ssdrayheql svaeitsscf epnnqmvkcd
      241 prhgkymacc mlyrgdvvpk evnvaiaaik tkrtiqfvdw cptgfkvgin yqpptvvpgg
      301 dlaqvqravc mlsnttaiae awarldhkfd lmyakrafvh wyvgegmeeg efaearedla
      361 alekdyeevg tdsfeeendg e
//
LOCUS       XP_053933541             643 aa            linear   VRT 09-MAR-2023
DEFINITION  mediator of RNA polymerase II transcription subunit 17 [Cuculus
            canorus].
ACCESSION   XP_053933541
VERSION     XP_053933541.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077566.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..643
                     /product="mediator of RNA polymerase II transcription
                     subunit 17"
                     /calculated_mol_wt=71968
     Region          <119..>339
                     /region_name="Med17"
                     /note="Subunit 17 of Mediator complex; pfam10156"
                     /db_xref="CDD:401965"
     CDS             1..643
                     /gene="MED17"
                     /coded_by="XM_054077566.1:61..1992"
                     /db_xref="GeneID:104064090"
ORIGIN      
        1 magvpavris iesacekqvq evgldgsety lqplsmsqnl arlaqridfs qgsgseedep
       61 gsagrawaep geaedeeglv kfqpslwpwd svrnnlrsal temcvlydvl sivkdkkfmt
      121 ldpvvqdplp pkqnpqflql iskkkslaga aqillkgaer lsksvaenqe nkrqrdfnse
      181 llrlrqhwkl rkvgdkilgd lsyrsagslf lhhgtfevik ntdidldkki pddycpldvq
      241 ipsdlegsay ikvsiqkqap digdlgtvnl fkrpmpkskp gcphwqtkle taqnvllcke
      301 ifaqlsreav qiksqiphiv vknqiisqpf pglqlsislc hsssdkksqk sasekqnped
      361 hlyvlehnlh qlirechkqt lsstvmphpa sapfgqkrmr lagpqafdkn disslqsneg
      421 llekiikqak hiflrrrtar tidslasrie dpqiqahwsn indvyessvk vlitsqgyeq
      481 icksiqlqln igveqirvvh rdgrvitlsh qeqelqdfll sqmsqhqvha vqqlakvmgw
      541 hvlsfsnhvg lgpvesigna saitvaspng dyaisvrngp esgskvmvqf prsqckdlpk
      601 gdvlqdnkwn hlrgpfkevq wnkmegrnfv ykmellmaal tpc
//
LOCUS       XP_053933554             271 aa            linear   VRT 09-MAR-2023
DEFINITION  V-set and transmembrane domain-containing protein 5 [Cuculus
            canorus].
ACCESSION   XP_053933554
VERSION     XP_053933554.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077579.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..271
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..271
                     /product="V-set and transmembrane domain-containing
                     protein 5"
                     /calculated_mol_wt=29744
     Region          111..210
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          122..126
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409431"
     Region          135..139
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409431"
     Region          174..178
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409431"
     Region          188..193
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409431"
     Region          202..205
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409431"
     CDS             1..271
                     /gene="VSTM5"
                     /coded_by="XM_054077579.1:50..865"
                     /db_xref="GeneID:104064190"
ORIGIN      
        1 mtgrqkkkkk arqaacrpqa glaahqrsfp gdgsrpgsaf pssangsfdp crriaggreq
       61 rarkrrerse eeripwgpmg alrgalgtaa lclaaacalh ppggvslvip qhninatvaq
      121 nillsveysc rgvatvewkh vsswgttkiv ewksgnyvni stvykdrvtt fengsiqlln
      181 vgmrdagyyf itvteeygtn tygtiivnvy eiiyedlhfv avlfaflaav aailicfmwl
      241 cnkslhlfqk kttheltast teeieletie c
//
LOCUS       XP_053933563              44 aa            linear   VRT 09-MAR-2023
DEFINITION  thymosin beta-4 [Cuculus canorus].
ACCESSION   XP_053933563
VERSION     XP_053933563.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077588.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..44
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..44
                     /product="thymosin beta-4"
                     /calculated_mol_wt=4921
     Region          3..41
                     /region_name="Thymosin"
                     /note="Thymosin beta-4 family; pfam01290"
                     /db_xref="CDD:396038"
     CDS             1..44
                     /gene="TMSB4X"
                     /coded_by="XM_054077588.1:136..270"
                     /db_xref="GeneID:128853358"
ORIGIN      
        1 msdkpdmaei ekfdksklkk tetqeknplp sketieqekq ages
//
LOCUS       XP_053933573             416 aa            linear   VRT 09-MAR-2023
DEFINITION  casein kinase I [Cuculus canorus].
ACCESSION   XP_053933573
VERSION     XP_053933573.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077598.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..416
                     /product="casein kinase I"
                     /calculated_mol_wt=47370
     Region          8..282
                     /region_name="STKc_CK1_delta_epsilon"
                     /note="Catalytic domain of the Serine/Threonine protein
                     kinases, Casein Kinase 1 delta and epsilon; cd14125"
                     /db_xref="CDD:271027"
     Site            order(15..21,23,36,38,82..86,88,90,128,130,132..133,135,
                     149,152,175..178)
                     /site_type="active"
                     /db_xref="CDD:271027"
     Site            order(15..21,23,36,38,82..86,130,132..133,135,149)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:271027"
     Site            order(19,88,90,128,130,132,152,175..178)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:271027"
     Site            order(148..158,160..178)
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:271027"
     CDS             1..416
                     /gene="CSNK1E"
                     /coded_by="XM_054077598.1:315..1565"
                     /db_xref="GeneID:104065886"
ORIGIN      
        1 melrvgnkyr lgrkigsgsf gdiylgania tgeevaikle cvktkhpqlh ieskfykmmq
       61 ggvgipsikw cgaegdynvm vmellgpsle dlfnfcsrkf slktvlllad qmisrieyih
      121 sknfihrdvk pdnflmglgk kgnlvyiidf glakkyrdar thqhipyren knltgtarya
      181 sinthlgieq srrddleslg yvlmyfnlgs lpwqglkaat krqkyerise kkmstpievl
      241 ckgypsefst ylnfcrslrf ddkpdysylr qlfrnlfhrq gfsydyvfdw nmlkfgaarn
      301 pedmdrerre hereermgql rgsatralpp gppagasanr lrnvtepmas tptsriqqsg
      361 ntspraisrv drerkvsmrl hrgapanvss sdltgrqevs risasqtsvp fdhlgk
//
LOCUS       XP_053933582             416 aa            linear   VRT 09-MAR-2023
DEFINITION  casein kinase I [Cuculus canorus].
ACCESSION   XP_053933582
VERSION     XP_053933582.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077607.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..416
                     /product="casein kinase I"
                     /calculated_mol_wt=47370
     Region          8..282
                     /region_name="STKc_CK1_delta_epsilon"
                     /note="Catalytic domain of the Serine/Threonine protein
                     kinases, Casein Kinase 1 delta and epsilon; cd14125"
                     /db_xref="CDD:271027"
     Site            order(15..21,23,36,38,82..86,88,90,128,130,132..133,135,
                     149,152,175..178)
                     /site_type="active"
                     /db_xref="CDD:271027"
     Site            order(15..21,23,36,38,82..86,130,132..133,135,149)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:271027"
     Site            order(19,88,90,128,130,132,152,175..178)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:271027"
     Site            order(148..158,160..178)
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:271027"
     CDS             1..416
                     /gene="CSNK1E"
                     /coded_by="XM_054077607.1:350..1600"
                     /db_xref="GeneID:104065886"
ORIGIN      
        1 melrvgnkyr lgrkigsgsf gdiylgania tgeevaikle cvktkhpqlh ieskfykmmq
       61 ggvgipsikw cgaegdynvm vmellgpsle dlfnfcsrkf slktvlllad qmisrieyih
      121 sknfihrdvk pdnflmglgk kgnlvyiidf glakkyrdar thqhipyren knltgtarya
      181 sinthlgieq srrddleslg yvlmyfnlgs lpwqglkaat krqkyerise kkmstpievl
      241 ckgypsefst ylnfcrslrf ddkpdysylr qlfrnlfhrq gfsydyvfdw nmlkfgaarn
      301 pedmdrerre hereermgql rgsatralpp gppagasanr lrnvtepmas tptsriqqsg
      361 ntspraisrv drerkvsmrl hrgapanvss sdltgrqevs risasqtsvp fdhlgk
//
LOCUS       XP_009564693             664 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier organic anion transporter family member 2B1 [Cuculus
            canorus].
ACCESSION   XP_009564693
VERSION     XP_009564693.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566398.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564693.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..664
                     /product="solute carrier organic anion transporter family
                     member 2B1"
                     /calculated_mol_wt=72496
     Region          26..545
                     /region_name="MFS_SLCO2B_OATP2B"
                     /note="Solute carrier organic anion transporter 2B
                     subfamily of the Major Facilitator Superfamily of
                     transporters; cd17460"
                     /db_xref="CDD:341018"
     Site            order(40..41,44..45,48,80,179..180,182..184,187,207,
                     210..211,214,338,341..342,345..347,350,379,383,424..425,
                     429,433,490,493..494,497..498,501)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:341018"
     CDS             1..664
                     /gene="SLCO2B1"
                     /coded_by="XM_009566398.2:142..2136"
                     /db_xref="GeneID:104064104"
ORIGIN      
        1 mvstatkssy pdqsrktlcs spflsikffv fchgllqlsq llvsgylkss istierrygl
       61 ssqtsgllas fnevgntlli ifisyfgsrv hrphfigcga ilvslagflm slphfitgpy
      121 eydqsvasmf snttdlcqpg lpgsqgnfsd asctphaare nqevllvmfi aqvllgiggv
      181 piqpfgisyi ddfasernsp lylgilfsvt iigpgvgfml gsamlrfyvd idkvtgeevq
      241 ltnkdprwvg awwlgflvaa slvalsavpy fffprempke aasgkesdsk kskamlselr
      301 prsehmqnls ltkfikhfpv vllrnlrhpv fllvvlaqvn lsamvaglat fmakflerqf
      361 sltaslanmi igavnipgam vgivvggail krfqmslrqc samcilgmfl cllvafpllf
      421 lgcptqkvag vtygessefg hhtlecslqc ncpekaynpi cgsdaveyis pcsagckvvn
      481 inadnsilny tncsciseng lmgfakpgtc gtgcshlflp fvvlsclagi lastshtpsf
      541 mlilrsiqpe dksfavgiqf mllrvlawmp gpvlygsaid ttcilwekkc dkkaacryyn
      601 nklfrqrylg lqfffevgaf lcfvtvyvil rrqekeatna aeakvkpeke kltgnsiksl
      661 eskv
//
LOCUS       XP_053933604             256 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphomannomutase 1 [Cuculus canorus].
ACCESSION   XP_053933604
VERSION     XP_053933604.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077629.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..256
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..256
                     /product="phosphomannomutase 1"
                     /calculated_mol_wt=29186
     Region          9..247
                     /region_name="HAD_PMM"
                     /note="phosphomannomutase, similar to human PMM1 and PMM2,
                     Saccharomyces Sec53p, and Arabidopsis thaliana PMM;
                     cd02585"
                     /db_xref="CDD:319784"
     Site            order(13..17,22,46..48,52,126,131,137,144,179..182,184,
                     192,211..212,219..220)
                     /site_type="active"
                     /db_xref="CDD:319784"
     CDS             1..256
                     /gene="PMM1"
                     /coded_by="XM_054077629.1:90..860"
                     /db_xref="GeneID:104055536"
ORIGIN      
        1 maaargrvlc lfdvdgtlta arqkiepevd aflrelrqrv higvvggsdy akiaeqlgeg
       61 deviekfdyv faengtvqyr ngrlvskqai qdhlgeellq dlinfclnym allklpkkrg
      121 tfiefrngml nispigrsct peeriefsel dkkerirekf vaalqrefag kglrfsrggm
      181 isfdvfpegw dkryclnvld nerfdtihff gnettpggnd yeiyddprtv ghsvqspqdt
      241 vqrcreiffp eranec
//
LOCUS       XP_009554914             153 aa            linear   VRT 09-MAR-2023
DEFINITION  cold shock domain-containing protein C2 [Cuculus canorus].
ACCESSION   XP_009554914
VERSION     XP_009554914.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556619.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..153
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..153
                     /product="cold shock domain-containing protein C2"
                     /calculated_mol_wt=16792
     Region          70..134
                     /region_name="CSP_CDS"
                     /note="Cold-Shock Protein (CSP) contains an S1-like
                     cold-shock domain (CSD) that is found in eukaryotes,
                     prokaryotes, and archaea. CSP's include the major
                     cold-shock proteins CspA and CspB in bacteria and the
                     eukaryotic gene regulatory factor Y-box protein; cd04458"
                     /db_xref="CDD:239905"
     Site            order(75,84,95,125)
                     /site_type="DNA binding"
                     /note="DNA-binding site [nucleotide binding]"
                     /db_xref="CDD:239905"
     Site            order(81..87,94..97)
                     /site_type="active"
                     /note="RNA-binding motif [active]"
                     /db_xref="CDD:239905"
     CDS             1..153
                     /gene="CSDC2"
                     /coded_by="XM_009556619.2:356..817"
                     /db_xref="GeneID:104055492"
ORIGIN      
        1 mssdsstppt vpplhspksp vwptfpfqre gsriwergnl llrdlpsplp tkrtrtysat
       61 arasagpifk gvckqfsrsq ghgfitpeng tedifvhvsd iegeyvpveg devtykicpi
      121 ppknqkfqav evvltnlaph tkhetwsgqi igs
//
LOCUS       XP_053933628             425 aa            linear   VRT 09-MAR-2023
DEFINITION  T-box transcription factor TBX19 [Cuculus canorus].
ACCESSION   XP_053933628
VERSION     XP_053933628.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077653.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..425
                     /product="T-box transcription factor TBX19"
                     /calculated_mol_wt=46626
     Region          34..216
                     /region_name="T-box_TBX19-like"
                     /note="DNA-binding domain of T-box transcription factor 19
                     and related T-box proteins; cd20201"
                     /db_xref="CDD:410327"
     Site            order(63,66..67,98,100,144,147..148,159..160,193..195,201,
                     204..205,208..210,212..214)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410327"
     Site            order(84,126..129)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:410327"
     CDS             1..425
                     /gene="TBX19"
                     /coded_by="XM_054077653.1:4540..5817"
                     /db_xref="GeneID:104055783"
ORIGIN      
        1 madlgcknps dctvsrllsv veselragrd kgdptekqlq vvledatlwq rfkevtnemi
       61 vtkngrrmfp vlkisvsgld pnamysflld faptdghrwk yvngewvpag kpeppnhscv
      121 yihpdspnfg ahwmkaaisf skvkltnkls gsgqimlnsl hkyepqvhiv rvggphrmvm
      181 ncsfpetqfi avtayqneei talkikynpf akafldaker nhpkdapetv segqhttysh
      241 lggwlisspd tmcasgssny qytgplplpa phaphgcery salrghraap yppsymqrnh
      301 sptvnllegs snnlqvfsgh dswtlpssph anllsvphtk eaaspgpshy pclwtvsntt
      361 vnvtnpgsel nnspssmflr snvplptsss vqiplqrtvs gsmetqgett larladsawt
      421 pshsf
//
LOCUS       XP_053933642             178 aa            linear   VRT 09-MAR-2023
DEFINITION  vesicle transport protein SFT2B isoform X1 [Cuculus canorus].
ACCESSION   XP_053933642
VERSION     XP_053933642.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077667.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..178
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..178
                     /product="vesicle transport protein SFT2B isoform X1"
                     /calculated_mol_wt=19368
     Region          52..163
                     /region_name="Got1"
                     /note="Got1/Sft2-like family; pfam04178"
                     /db_xref="CDD:461210"
     CDS             1..178
                     /gene="SFT2D2"
                     /coded_by="XM_054077667.1:95..631"
                     /db_xref="GeneID:104055836"
ORIGIN      
        1 mpgpvvsgeg qrsrgadgmd klkrvlsgrd teepgglaev idatslgwgt rvkgfiacfv
       61 igclcsllgt cllwvprkgl mlfavfytlg niasigstcf lmgpmkqlkr mfeptrliat
      121 ivmllclvlt lcsalwwrke glallfcilq ffaltwysis fipfardavk kcvsvcls
//
LOCUS       XP_053933647             166 aa            linear   VRT 09-MAR-2023
DEFINITION  vesicle transport protein SFT2B isoform X2 [Cuculus canorus].
ACCESSION   XP_053933647
VERSION     XP_053933647.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077672.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..166
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..166
                     /product="vesicle transport protein SFT2B isoform X2"
                     /calculated_mol_wt=18052
     Region          52..151
                     /region_name="Got1"
                     /note="Got1/Sft2-like family; pfam04178"
                     /db_xref="CDD:461210"
     CDS             1..166
                     /gene="SFT2D2"
                     /coded_by="XM_054077672.1:89..589"
                     /db_xref="GeneID:104055836"
ORIGIN      
        1 mpgpvvsgeg qrsrgadgmd klkrvlsgrd teepgglaev idatslgwgt rvkgfiacfv
       61 igclcsllgt cllwvprkgl mlfavfytlg niasigstcf lmgpmkqlkr mfeptrliat
      121 ivmlwrkegl allfcilqff altwysisfi pfardavkkc vsvcls
//
LOCUS       XP_053933654             155 aa            linear   VRT 09-MAR-2023
DEFINITION  vesicle transport protein SFT2B isoform X3 [Cuculus canorus].
ACCESSION   XP_053933654
VERSION     XP_053933654.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077679.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..155
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..155
                     /product="vesicle transport protein SFT2B isoform X3"
                     /calculated_mol_wt=16766
     Region          52..155
                     /region_name="Got1"
                     /note="Got1/Sft2-like family; pfam04178"
                     /db_xref="CDD:461210"
     CDS             1..155
                     /gene="SFT2D2"
                     /coded_by="XM_054077679.1:1129..1596"
                     /db_xref="GeneID:104055836"
ORIGIN      
        1 mpgpvvsgeg qrsrgadgmd klkrvlsgrd teepgglaev idatslgwgt rvkgfiacfv
       61 igclcsllgt cllwvprkgl mlfavfytlg niasigstcf lmgpmkqlkr mfeptrliat
      121 ivmllclvlt lcsalwwrke glallfcilq ffalt
//
LOCUS       XP_053933663             150 aa            linear   VRT 09-MAR-2023
DEFINITION  vesicle transport protein SFT2B isoform X4 [Cuculus canorus].
ACCESSION   XP_053933663
VERSION     XP_053933663.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077688.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..150
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..150
                     /product="vesicle transport protein SFT2B isoform X4"
                     /calculated_mol_wt=16265
     Region          52..>129
                     /region_name="Got1"
                     /note="Got1/Sft2-like family; pfam04178"
                     /db_xref="CDD:461210"
     CDS             1..150
                     /gene="SFT2D2"
                     /coded_by="XM_054077688.1:1127..1579"
                     /db_xref="GeneID:104055836"
ORIGIN      
        1 mpgpvvsgeg qrsrgadgmd klkrvlsgrd teepgglaev idatslgwgt rvkgfiacfv
       61 igclcsllgt cllwvprkgl mlfavfytlg niasigstcf lmgpmkqlkr mfeptrliat
      121 ivmllshfll esqkygrlfn lhetvlpfpv
//
LOCUS       XP_053933672             149 aa            linear   VRT 09-MAR-2023
DEFINITION  vesicle transport protein SFT2B isoform X5 [Cuculus canorus].
ACCESSION   XP_053933672
VERSION     XP_053933672.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077697.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..149
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..149
                     /product="vesicle transport protein SFT2B isoform X5"
                     /calculated_mol_wt=16343
     Region          42..134
                     /region_name="Got1"
                     /note="Got1/Sft2-like family; pfam04178"
                     /db_xref="CDD:461210"
     CDS             1..149
                     /gene="SFT2D2"
                     /coded_by="XM_054077697.1:1146..1595"
                     /db_xref="GeneID:104055836"
ORIGIN      
        1 mpgpvvsgeg qrsrgadgmd klkrvlsgrd teepgglaeg tcllwvprkg lmlfavfytl
       61 gniasigstc flmgpmkqlk rmfeptrlia tivmllclvl tlcsalwwrk eglallfcil
      121 qffaltwysi sfipfardav kkcvsvcls
//
LOCUS       XP_053933681             143 aa            linear   VRT 09-MAR-2023
DEFINITION  vesicle transport protein SFT2B isoform X6 [Cuculus canorus].
ACCESSION   XP_053933681
VERSION     XP_053933681.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077706.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..143
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..143
                     /product="vesicle transport protein SFT2B isoform X6"
                     /calculated_mol_wt=15450
     Region          52..143
                     /region_name="Got1"
                     /note="Got1/Sft2-like family; pfam04178"
                     /db_xref="CDD:461210"
     CDS             1..143
                     /gene="SFT2D2"
                     /coded_by="XM_054077706.1:99..530"
                     /db_xref="GeneID:104055836"
ORIGIN      
        1 mpgpvvsgeg qrsrgadgmd klkrvlsgrd teepgglaev idatslgwgt rvkgfiacfv
       61 igclcsllgt cllwvprkgl mlfavfytlg niasigstcf lmgpmkqlkr mfeptrliat
      121 ivmlwrkegl allfcilqff alt
//
LOCUS       XP_053933695             678 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane and coiled-coil domain-containing protein 3 isoform
            X1 [Cuculus canorus].
ACCESSION   XP_053933695
VERSION     XP_053933695.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077720.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..678
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..678
                     /product="transmembrane and coiled-coil domain-containing
                     protein 3 isoform X1"
                     /calculated_mol_wt=75729
     Region          62..>241
                     /region_name="DR0291"
                     /note="Predicted nucleic acid-binding protein DR0291,
                     contains C4-type Zn-ribbon domain [General function
                     prediction only]; COG1579"
                     /db_xref="CDD:441187"
     Region          268..>646
                     /region_name="RosB"
                     /note="Predicted Kef-type K+ transport protein, K+/H+
                     antiporter domain [Inorganic ion transport and
                     metabolism]; COG4651"
                     /db_xref="CDD:443689"
     CDS             1..678
                     /gene="TMCO3"
                     /coded_by="XM_054077720.1:238..2274"
                     /db_xref="GeneID:104056620"
ORIGIN      
        1 mkatgfislw tlvslpygql anpaehedvv khviklhrgk gaviaqrkqw vmescrklsg
       61 llrqknvvln klksairave kdaglsdeek lfqvhtfeif qkelnesens vfqaihglqr
      121 alqgdykdvv nmkessrqrl ealreaaike emeyvellaa ekhqvealkn mqhqnkslsm
      181 ldeiledvrk aadrleeeie ehafddnksv rgvnfeavlr veedeanskr naskrevedd
      241 lglsmlidsq nnqyiltkpr dstipradhh fikdivtigm lslpcgwlct tiglptmfgy
      301 iicgvllgps glnsiksivq vetlgefgvf ftlflvglef sperlrkvwk islqgpcymt
      361 vlmiafgllw ghllqirptq svfistclsl sstplvsrfl agsvrgdkeg didyssvllg
      421 mlvmqdvqlg lfiavmptli qagvststsi fkeilrilil igqilfslaa vflmclvikt
      481 yligpyyrkl haeskgnkei lilgitafif lmltitelld vsmelgcfla galissqghm
      541 vteeimssie pirdflaiif fasiglhvfp tfviyeltvl lfltlsvvim kfvlavlvls
      601 lilpktsqyi kwivsaglaq vsefsfvlgs rarragiisr evyllilsvt tlslllapal
      661 wraaimkcvp rperrsst
//
LOCUS       XP_053933708             570 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane and coiled-coil domain-containing protein 3 isoform
            X2 [Cuculus canorus].
ACCESSION   XP_053933708
VERSION     XP_053933708.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077733.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..570
                     /product="transmembrane and coiled-coil domain-containing
                     protein 3 isoform X2"
                     /calculated_mol_wt=63715
     Region          62..>241
                     /region_name="DR0291"
                     /note="Predicted nucleic acid-binding protein DR0291,
                     contains C4-type Zn-ribbon domain [General function
                     prediction only]; COG1579"
                     /db_xref="CDD:441187"
     Region          268..>564
                     /region_name="RosB"
                     /note="Predicted Kef-type K+ transport protein, K+/H+
                     antiporter domain [Inorganic ion transport and
                     metabolism]; COG4651"
                     /db_xref="CDD:443689"
     CDS             1..570
                     /gene="TMCO3"
                     /coded_by="XM_054077733.1:238..1950"
                     /db_xref="GeneID:104056620"
ORIGIN      
        1 mkatgfislw tlvslpygql anpaehedvv khviklhrgk gaviaqrkqw vmescrklsg
       61 llrqknvvln klksairave kdaglsdeek lfqvhtfeif qkelnesens vfqaihglqr
      121 alqgdykdvv nmkessrqrl ealreaaike emeyvellaa ekhqvealkn mqhqnkslsm
      181 ldeiledvrk aadrleeeie ehafddnksv rgvnfeavlr veedeanskr naskrevedd
      241 lglsmlidsq nnqyiltkpr dstipradhh fikdivtigm lslpcgwlct tiglptmfgy
      301 iicgvllgps glnsiksivq vetlgefgvf ftlflvglef sperlrkvwk islqgpcymt
      361 vlmiafgllw ghllqirptq svfistclsl sstplvsrfl agsvrgdkeg didyssvllg
      421 mlvmqdvqlg lfiavmptli qagvststsi fkeilrilil igqilfslaa vflmclvikt
      481 yligpyyrkl haeskgnkei lilgitafif lmltitelld vsmelgcfla galissqghm
      541 vteeimssie pirdflaiif fasiatcffs
//
LOCUS       XP_053933719             259 aa            linear   VRT 09-MAR-2023
DEFINITION  DCN1-like protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053933719
VERSION     XP_053933719.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077744.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..259
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..259
                     /product="DCN1-like protein 2 isoform X1"
                     /calculated_mol_wt=30172
     Region          2..48
                     /region_name="UBA_DCNL2"
                     /note="UBA-like domain found in DCN1-like protein 2
                     (DCNL2) and similar proteins; cd14412"
                     /db_xref="CDD:270595"
     Region          136..246
                     /region_name="Cullin_binding"
                     /note="Cullin binding; pfam03556"
                     /db_xref="CDD:460971"
     CDS             1..259
                     /gene="DCUN1D2"
                     /coded_by="XM_054077744.1:144..923"
                     /db_xref="GeneID:104056619"
ORIGIN      
        1 mhklkssqkd kvrqfmaftq agertaiycl mqnewkleva tdnyfqnpdl yykesmknsv
       61 drkkleqlyn rykdpqdenk igidgiqqfc ddlsldpasi svlvvawkfr aatqcefskk
      121 efvdgmtelg cdtteklkal lprleqelkd ptkfkdfyqf tfnfaknpgq kgldlemaia
      181 ywnlvlsgrf kfldlwnkfl lehhkrsipk dtwnllldfg nmiaddmsny deegawpvli
      241 ddfveyarpv vtggkrkts
//
LOCUS       XP_053933726             244 aa            linear   VRT 09-MAR-2023
DEFINITION  DCN1-like protein 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053933726
VERSION     XP_053933726.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077751.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..244
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..244
                     /product="DCN1-like protein 2 isoform X2"
                     /calculated_mol_wt=28329
     Region          <1..33
                     /region_name="UBA_like_SF"
                     /note="UBA domain-like superfamily; cl21463"
                     /db_xref="CDD:473871"
     Region          121..231
                     /region_name="Cullin_binding"
                     /note="Cullin binding; pfam03556"
                     /db_xref="CDD:460971"
     CDS             1..244
                     /gene="DCUN1D2"
                     /coded_by="XM_054077751.1:434..1168"
                     /db_xref="GeneID:104056619"
ORIGIN      
        1 maftqagert aiyclmqnew klevatdnyf qnpdlyykes mknsvdrkkl eqlynrykdp
       61 qdenkigidg iqqfcddlsl dpasisvlvv awkfraatqc efskkefvdg mtelgcdtte
      121 klkallprle qelkdptkfk dfyqftfnfa knpgqkgldl emaiaywnlv lsgrfkfldl
      181 wnkfllehhk rsipkdtwnl lldfgnmiad dmsnydeega wpvliddfve yarpvvtggk
      241 rkts
//
LOCUS       XP_053933735             244 aa            linear   VRT 09-MAR-2023
DEFINITION  DCN1-like protein 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053933735
VERSION     XP_053933735.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077760.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..244
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..244
                     /product="DCN1-like protein 2 isoform X2"
                     /calculated_mol_wt=28329
     Region          <1..33
                     /region_name="UBA_like_SF"
                     /note="UBA domain-like superfamily; cl21463"
                     /db_xref="CDD:473871"
     Region          121..231
                     /region_name="Cullin_binding"
                     /note="Cullin binding; pfam03556"
                     /db_xref="CDD:460971"
     CDS             1..244
                     /gene="DCUN1D2"
                     /coded_by="XM_054077760.1:264..998"
                     /db_xref="GeneID:104056619"
ORIGIN      
        1 maftqagert aiyclmqnew klevatdnyf qnpdlyykes mknsvdrkkl eqlynrykdp
       61 qdenkigidg iqqfcddlsl dpasisvlvv awkfraatqc efskkefvdg mtelgcdtte
      121 klkallprle qelkdptkfk dfyqftfnfa knpgqkgldl emaiaywnlv lsgrfkfldl
      181 wnkfllehhk rsipkdtwnl lldfgnmiad dmsnydeega wpvliddfve yarpvvtggk
      241 rkts
//
LOCUS       XP_053933744             359 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Wnt-16 [Cuculus canorus].
ACCESSION   XP_053933744
VERSION     XP_053933744.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077769.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..359
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..359
                     /product="protein Wnt-16"
                     /calculated_mol_wt=39492
     Region          46..359
                     /region_name="Wnt_Wnt16"
                     /note="Wnt domain found in protein Wnt-16 and similar
                     proteins; cd19344"
                     /db_xref="CDD:381718"
     Site            order(216..217,220..222,230,338,340,342,344)
                     /site_type="other"
                     /note="Frizzled receptor binding site [polypeptide
                     binding]"
                     /db_xref="CDD:381718"
     CDS             1..359
                     /gene="WNT16"
                     /coded_by="XM_054077769.1:132..1211"
                     /db_xref="GeneID:104061632"
ORIGIN      
        1 mgrgvplgsl llllalcpaa aggtwmwlgi apsggqekpg cpspplsrrq qelceqkrel
       61 lpairegarl glrecrnqfr herwdcrppp rgpsdassva aafghqlssg tketafiyav
      121 tsaglvhsvt rscsvgnmte cscdmnlrhg gsasegwhwg gcsddihygm sfsrkfldvp
      181 iknitgksgs glaamnlhnn eagrqavakl msvdcrchgv sgscavktcw ktmssfekig
      241 rflkdkyens iqisdrlkkk lrrkeksqrk ipvgkedlly vnkspnycve dqklgipgtq
      301 grecnrtseg pdgcnllccg rgynthvvrh verceckfvw ccyvrcrrce tmtdvhtck
//
LOCUS       XP_053933753             140 aa            linear   VRT 09-MAR-2023
DEFINITION  dnaJ homolog subfamily C member 15 isoform X1 [Cuculus canorus].
ACCESSION   XP_053933753
VERSION     XP_053933753.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077778.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..140
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..140
                     /product="dnaJ homolog subfamily C member 15 isoform X1"
                     /calculated_mol_wt=15005
     Region          30..134
                     /region_name="DnaJ"
                     /note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
                     protein 40) proteins are highly conserved and play crucial
                     roles in protein translation, folding, unfolding,
                     translocation, and degradation. They act primarily by
                     stimulating the ATPase activity of Hsp70s; cl02542"
                     /db_xref="CDD:413365"
     CDS             1..140
                     /gene="DNAJC15"
                     /coded_by="XM_054077778.1:52..474"
                     /db_xref="GeneID:104056513"
ORIGIN      
        1 magaaerlrh aefvrapaga epergpartm iavglgiatv afagryafhl wkpleqaite
       61 takristssl slyykggfeq kmsrreasli lgvspsagka kirtahrkim ilnhpdkggs
      121 pylatkinea kdvlesttks
//
LOCUS       XP_053933759             111 aa            linear   VRT 09-MAR-2023
DEFINITION  dnaJ homolog subfamily C member 15 isoform X2 [Cuculus canorus].
ACCESSION   XP_053933759
VERSION     XP_053933759.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077784.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..111
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..111
                     /product="dnaJ homolog subfamily C member 15 isoform X2"
                     /calculated_mol_wt=11948
     Region          1..105
                     /region_name="DnaJ"
                     /note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
                     protein 40) proteins are highly conserved and play crucial
                     roles in protein translation, folding, unfolding,
                     translocation, and degradation. They act primarily by
                     stimulating the ATPase activity of Hsp70s; cl02542"
                     /db_xref="CDD:413365"
     CDS             1..111
                     /gene="DNAJC15"
                     /coded_by="XM_054077784.1:454..789"
                     /db_xref="GeneID:104056513"
ORIGIN      
        1 miavglgiat vafagryafh lwkpleqait etakristss lslyykggfe qkmsrreasl
       61 ilgvspsagk akirtahrki milnhpdkgg spylatkine akdvlesttk s
//
LOCUS       XP_053933767             111 aa            linear   VRT 09-MAR-2023
DEFINITION  dnaJ homolog subfamily C member 15 isoform X2 [Cuculus canorus].
ACCESSION   XP_053933767
VERSION     XP_053933767.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077792.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..111
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..111
                     /product="dnaJ homolog subfamily C member 15 isoform X2"
                     /calculated_mol_wt=11948
     Region          1..105
                     /region_name="DnaJ"
                     /note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
                     protein 40) proteins are highly conserved and play crucial
                     roles in protein translation, folding, unfolding,
                     translocation, and degradation. They act primarily by
                     stimulating the ATPase activity of Hsp70s; cl02542"
                     /db_xref="CDD:413365"
     CDS             1..111
                     /gene="DNAJC15"
                     /coded_by="XM_054077792.1:667..1002"
                     /db_xref="GeneID:104056513"
ORIGIN      
        1 miavglgiat vafagryafh lwkpleqait etakristss lslyykggfe qkmsrreasl
       61 ilgvspsagk akirtahrki milnhpdkgg spylatkine akdvlesttk s
//
LOCUS       XP_053933777             111 aa            linear   VRT 09-MAR-2023
DEFINITION  dnaJ homolog subfamily C member 15 isoform X2 [Cuculus canorus].
ACCESSION   XP_053933777
VERSION     XP_053933777.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077802.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..111
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..111
                     /product="dnaJ homolog subfamily C member 15 isoform X2"
                     /calculated_mol_wt=11948
     Region          1..105
                     /region_name="DnaJ"
                     /note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
                     protein 40) proteins are highly conserved and play crucial
                     roles in protein translation, folding, unfolding,
                     translocation, and degradation. They act primarily by
                     stimulating the ATPase activity of Hsp70s; cl02542"
                     /db_xref="CDD:413365"
     CDS             1..111
                     /gene="DNAJC15"
                     /coded_by="XM_054077802.1:232..567"
                     /db_xref="GeneID:104056513"
ORIGIN      
        1 miavglgiat vafagryafh lwkpleqait etakristss lslyykggfe qkmsrreasl
       61 ilgvspsagk akirtahrki milnhpdkgg spylatkine akdvlesttk s
//
LOCUS       XP_053933783             111 aa            linear   VRT 09-MAR-2023
DEFINITION  dnaJ homolog subfamily C member 15 isoform X2 [Cuculus canorus].
ACCESSION   XP_053933783
VERSION     XP_053933783.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077808.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..111
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..111
                     /product="dnaJ homolog subfamily C member 15 isoform X2"
                     /calculated_mol_wt=11948
     Region          1..105
                     /region_name="DnaJ"
                     /note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
                     protein 40) proteins are highly conserved and play crucial
                     roles in protein translation, folding, unfolding,
                     translocation, and degradation. They act primarily by
                     stimulating the ATPase activity of Hsp70s; cl02542"
                     /db_xref="CDD:413365"
     CDS             1..111
                     /gene="DNAJC15"
                     /coded_by="XM_054077808.1:141..476"
                     /db_xref="GeneID:104056513"
ORIGIN      
        1 miavglgiat vafagryafh lwkpleqait etakristss lslyykggfe qkmsrreasl
       61 ilgvspsagk akirtahrki milnhpdkgg spylatkine akdvlesttk s
//
LOCUS       XP_053933790             111 aa            linear   VRT 09-MAR-2023
DEFINITION  dnaJ homolog subfamily C member 15 isoform X2 [Cuculus canorus].
ACCESSION   XP_053933790
VERSION     XP_053933790.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077815.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..111
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..111
                     /product="dnaJ homolog subfamily C member 15 isoform X2"
                     /calculated_mol_wt=11948
     Region          1..105
                     /region_name="DnaJ"
                     /note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
                     protein 40) proteins are highly conserved and play crucial
                     roles in protein translation, folding, unfolding,
                     translocation, and degradation. They act primarily by
                     stimulating the ATPase activity of Hsp70s; cl02542"
                     /db_xref="CDD:413365"
     CDS             1..111
                     /gene="DNAJC15"
                     /coded_by="XM_054077815.1:459..794"
                     /db_xref="GeneID:104056513"
ORIGIN      
        1 miavglgiat vafagryafh lwkpleqait etakristss lslyykggfe qkmsrreasl
       61 ilgvspsagk akirtahrki milnhpdkgg spylatkine akdvlesttk s
//
LOCUS       XP_053933799             111 aa            linear   VRT 09-MAR-2023
DEFINITION  dnaJ homolog subfamily C member 15 isoform X2 [Cuculus canorus].
ACCESSION   XP_053933799
VERSION     XP_053933799.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077824.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..111
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..111
                     /product="dnaJ homolog subfamily C member 15 isoform X2"
                     /calculated_mol_wt=11948
     Region          1..105
                     /region_name="DnaJ"
                     /note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
                     protein 40) proteins are highly conserved and play crucial
                     roles in protein translation, folding, unfolding,
                     translocation, and degradation. They act primarily by
                     stimulating the ATPase activity of Hsp70s; cl02542"
                     /db_xref="CDD:413365"
     CDS             1..111
                     /gene="DNAJC15"
                     /coded_by="XM_054077824.1:153..488"
                     /db_xref="GeneID:104056513"
ORIGIN      
        1 miavglgiat vafagryafh lwkpleqait etakristss lslyykggfe qkmsrreasl
       61 ilgvspsagk akirtahrki milnhpdkgg spylatkine akdvlesttk s
//
LOCUS       XP_053933808             111 aa            linear   VRT 09-MAR-2023
DEFINITION  dnaJ homolog subfamily C member 15 isoform X2 [Cuculus canorus].
ACCESSION   XP_053933808
VERSION     XP_053933808.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077833.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..111
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..111
                     /product="dnaJ homolog subfamily C member 15 isoform X2"
                     /calculated_mol_wt=11948
     Region          1..105
                     /region_name="DnaJ"
                     /note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
                     protein 40) proteins are highly conserved and play crucial
                     roles in protein translation, folding, unfolding,
                     translocation, and degradation. They act primarily by
                     stimulating the ATPase activity of Hsp70s; cl02542"
                     /db_xref="CDD:413365"
     CDS             1..111
                     /gene="DNAJC15"
                     /coded_by="XM_054077833.1:189..524"
                     /db_xref="GeneID:104056513"
ORIGIN      
        1 miavglgiat vafagryafh lwkpleqait etakristss lslyykggfe qkmsrreasl
       61 ilgvspsagk akirtahrki milnhpdkgg spylatkine akdvlesttk s
//
LOCUS       XP_053933818             959 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA damage-induced apoptosis suppressor protein [Cuculus canorus].
ACCESSION   XP_053933818
VERSION     XP_053933818.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077843.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..959
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..959
                     /product="DNA damage-induced apoptosis suppressor protein"
                     /calculated_mol_wt=104494
     Region          10..189
                     /region_name="RPA1_DBD_C"
                     /note="A subfamily of OB folds corresponding to the
                     C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of
                     human RPA1 (also called RPA70). RPA1 is the large subunit
                     of Replication protein A (RPA). RPA is a nuclear
                     ssDNA-binding protein (SSB) which appears to...; cd04476"
                     /db_xref="CDD:239922"
     Site            order(12..14,60..63,65,71..73,75,124,131,145..146,
                     162..164)
                     /site_type="active"
                     /note="generic binding surface I [active]"
                     /db_xref="CDD:239922"
     Site            order(13,65..66,114..115,122..124,182,184,188..189)
                     /site_type="active"
                     /note="trimerization core interface [active]"
                     /db_xref="CDD:239922"
     Site            order(13,65..66,114..115,122..124,184,188)
                     /site_type="other"
                     /note="RPA1 DBD-C/RPA2 DBD-D interface [polypeptide
                     binding]"
                     /db_xref="CDD:239922"
     Site            order(25,28,41,44)
                     /site_type="other"
                     /note="Zinc binding site [ion binding]"
                     /db_xref="CDD:239922"
     Site            order(125,127,129,173)
                     /site_type="active"
                     /note="generic binding surface II [active]"
                     /db_xref="CDD:239922"
     Site            order(182,189)
                     /site_type="other"
                     /note="RPA1 DBD-C/RPA3 interface [polypeptide binding]"
                     /db_xref="CDD:239922"
     CDS             1..959
                     /gene="DDIAS"
                     /coded_by="XM_054077843.1:329..3208"
                     /db_xref="GeneID:104062995"
ORIGIN      
        1 mnsvrgllaa svisiqnscf iypacqkcfs rlildsrrfh clkcgctgea kdagyryrls
       61 lkiadtndlf ditvfgscld pffgvtaenl qryiqdfnql sgetntdasp gvlvqavesc
      121 figkrfifgv kgcangdggh saassilqnc srinrstknl tacqiflpnt avtgftvisy
      181 fhrllqsakf rssnnslyll daslvpvdep vgelsslssl srnswsvqss sresflaswq
      241 qsfsltssva wvtaedfptl evgtlvneph akegkpvsee scsvscndqi lcnsqfssss
      301 vkerdkkegn klssqpsqtd dssatdklet vsssktvcsh gnshrllqhp leyggksicp
      361 kinnrnyscp ekphnslfdk kdalasnhin vvevsqmdlm lwddlpfses lneflaried
      421 gnsvvtshgl vagklgvnpq klytrqtlva gdlpgvsilg rllppaends genifyacfq
      481 tnanprsdev sqcefsssvs ssadkdcggs cfipnpqlpi lsqsspftsg pfvseanidi
      541 skpawssrsl qstaehrets lklskaatcv hsvcdsclag henkencsip sqrtdlafpg
      601 mwdsdpaips ntriykeqlk pltglsentf ksitrrvklw nnsfpedsyn asadlfasar
      661 evaksvefln kscnsllqed tltekvtase smlypgdvpf nsskpsssrr rspptyrkhs
      721 tpvphsfsdl ecnlvsapdf vpcsqstpmt kplqklwpag eapvftpknp tkthfkckrt
      781 rssfqntllq dltgrlvkrg rlssggdkes nssvsqqsls srlpaafeew tppaaskrlk
      841 ttapltlksv swaadlqpac ghagrntvte skeksenyvc frterfnpgn adrvpttpaa
      901 agdtkalfln stvletcspt egenlflnan ysrtvlegai gwspelffqa wspssskpk
//
LOCUS       XP_053933828             959 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA damage-induced apoptosis suppressor protein [Cuculus canorus].
ACCESSION   XP_053933828
VERSION     XP_053933828.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077853.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..959
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..959
                     /product="DNA damage-induced apoptosis suppressor protein"
                     /calculated_mol_wt=104494
     Region          10..189
                     /region_name="RPA1_DBD_C"
                     /note="A subfamily of OB folds corresponding to the
                     C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of
                     human RPA1 (also called RPA70). RPA1 is the large subunit
                     of Replication protein A (RPA). RPA is a nuclear
                     ssDNA-binding protein (SSB) which appears to...; cd04476"
                     /db_xref="CDD:239922"
     Site            order(12..14,60..63,65,71..73,75,124,131,145..146,
                     162..164)
                     /site_type="active"
                     /note="generic binding surface I [active]"
                     /db_xref="CDD:239922"
     Site            order(13,65..66,114..115,122..124,182,184,188..189)
                     /site_type="active"
                     /note="trimerization core interface [active]"
                     /db_xref="CDD:239922"
     Site            order(13,65..66,114..115,122..124,184,188)
                     /site_type="other"
                     /note="RPA1 DBD-C/RPA2 DBD-D interface [polypeptide
                     binding]"
                     /db_xref="CDD:239922"
     Site            order(25,28,41,44)
                     /site_type="other"
                     /note="Zinc binding site [ion binding]"
                     /db_xref="CDD:239922"
     Site            order(125,127,129,173)
                     /site_type="active"
                     /note="generic binding surface II [active]"
                     /db_xref="CDD:239922"
     Site            order(182,189)
                     /site_type="other"
                     /note="RPA1 DBD-C/RPA3 interface [polypeptide binding]"
                     /db_xref="CDD:239922"
     CDS             1..959
                     /gene="DDIAS"
                     /coded_by="XM_054077853.1:178..3057"
                     /db_xref="GeneID:104062995"
ORIGIN      
        1 mnsvrgllaa svisiqnscf iypacqkcfs rlildsrrfh clkcgctgea kdagyryrls
       61 lkiadtndlf ditvfgscld pffgvtaenl qryiqdfnql sgetntdasp gvlvqavesc
      121 figkrfifgv kgcangdggh saassilqnc srinrstknl tacqiflpnt avtgftvisy
      181 fhrllqsakf rssnnslyll daslvpvdep vgelsslssl srnswsvqss sresflaswq
      241 qsfsltssva wvtaedfptl evgtlvneph akegkpvsee scsvscndqi lcnsqfssss
      301 vkerdkkegn klssqpsqtd dssatdklet vsssktvcsh gnshrllqhp leyggksicp
      361 kinnrnyscp ekphnslfdk kdalasnhin vvevsqmdlm lwddlpfses lneflaried
      421 gnsvvtshgl vagklgvnpq klytrqtlva gdlpgvsilg rllppaends genifyacfq
      481 tnanprsdev sqcefsssvs ssadkdcggs cfipnpqlpi lsqsspftsg pfvseanidi
      541 skpawssrsl qstaehrets lklskaatcv hsvcdsclag henkencsip sqrtdlafpg
      601 mwdsdpaips ntriykeqlk pltglsentf ksitrrvklw nnsfpedsyn asadlfasar
      661 evaksvefln kscnsllqed tltekvtase smlypgdvpf nsskpsssrr rspptyrkhs
      721 tpvphsfsdl ecnlvsapdf vpcsqstpmt kplqklwpag eapvftpknp tkthfkckrt
      781 rssfqntllq dltgrlvkrg rlssggdkes nssvsqqsls srlpaafeew tppaaskrlk
      841 ttapltlksv swaadlqpac ghagrntvte skeksenyvc frterfnpgn adrvpttpaa
      901 agdtkalfln stvletcspt egenlflnan ysrtvlegai gwspelffqa wspssskpk
//
LOCUS       XP_053933840             478 aa            linear   VRT 09-MAR-2023
DEFINITION  lysosomal Pro-X carboxypeptidase [Cuculus canorus].
ACCESSION   XP_053933840
VERSION     XP_053933840.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077865.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..478
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..478
                     /product="lysosomal Pro-X carboxypeptidase"
                     /calculated_mol_wt=53741
     Region          40..463
                     /region_name="alpha/beta hydrolases"
                     /note="A functionally diverse superfamily containing
                     proteases, lipases, peroxidases, esterases, epoxide
                     hydrolases and dehalogenases. The catalytic apparatus
                     typically involves three residues (catalytic triad): a
                     serine, a glutamate or aspartate and a...; cl21494"
                     /db_xref="CDD:473884"
     CDS             1..478
                     /gene="PRCP"
                     /coded_by="XM_054077865.1:80..1516"
                     /db_xref="GeneID:104062994"
ORIGIN      
        1 mqslllllpl lgtaalpvpn rrprgcadta gpyltrylrq qidhfgfden ltfqqrylia
       61 dqhwkkdngp ilfytgnegd itwfcnntgf mwdvaeelna mlvfaehryy geslpfgnes
      121 fsdskhlnyl tseqaladfa vlieylktti agaryspvia iggsyggmla awlrmkyphv
      181 vvgalaasap iwqfgdlvpc gtyfsivtnd fkhsgtgcse sirnswnain hlssteaglq
      241 wlssafhlcd plknlqdaav mknwlsetwv nlamvnypyk anflqplpaw piqevckflk
      301 dpslsdklll qnvfqavnly ynysgeascl disetatknl gqlgwyyqac temvmpmctd
      361 gvndmfepqk wdfdafseec frlwgvrprp swilsmyggk nisshsniif snggldpwsa
      421 ggvtqnisns lvailipdga hhldlrsrnp edprsvqqar aleicymkqw iekarhsh
//
LOCUS       XP_053933863             718 aa            linear   VRT 09-MAR-2023
DEFINITION  histone-lysine N-methyltransferase SETDB2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053933863
VERSION     XP_053933863.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077888.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..718
                     /product="histone-lysine N-methyltransferase SETDB2
                     isoform X1"
                     /calculated_mol_wt=80943
     Region          173..233
                     /region_name="HMT_MBD"
                     /note="Methyl-CpG binding domains (MBD) present in
                     putative histone methyltransferases (HMT) such as CLLD8
                     and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a
                     bifurcated SET domain, suggesting that CLLD8 might be
                     associated with methylation-mediated...; cd01395"
                     /db_xref="CDD:238689"
     Site            order(185,187,189,195,197,206,209,213)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238689"
     Region          231..717
                     /region_name="SET"
                     /note="SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)
                     domain superfamily; cl40432"
                     /db_xref="CDD:394802"
     Site            order(388..389,646..651,659..661,690..693)
                     /site_type="active"
                     /db_xref="CDD:380914"
     Site            order(388..389,647..651,692)
                     /site_type="other"
                     /note="SAM binding site [polypeptide binding]"
                     /db_xref="CDD:380914"
     CDS             1..718
                     /gene="SETDB2"
                     /coded_by="XM_054077888.1:533..2689"
                     /db_xref="GeneID:104066150"
ORIGIN      
        1 mrkdhglltr rtififqspc qgctgdlktf wtqlggrrvd nifeqlqnvl lllkqkikng
       61 tatnqeccqa wtmvneanlg dlltltnvsd vpdrddlqvt esklqhlltd dntansveds
      121 hskekemekt gsgskevssk iqdlplnlqy qnhkcssacl anrpmnsykg enplkipilf
      181 hfqrrhakan clsksldvny kapcgrslrn fqdvqnylfe tecnflfvdy fsfntyvllg
      241 rntvnpkplv fdfdishgae svpvsfcnhl dharlpyfky rraswprgyy lnnfssvfvd
      301 scdctdgcid rskcaclqlt vrgcskisls pnsktshgys ykrlegpvps gvyecsvlcr
      361 cdkmmcqnrv vqhgiqvrlq vfntekkgwg vrclddidkg tfvctysgrl msraeaqalg
      421 dadqglkekg avndrdcdfs skkrkrdsns sdcvielvqt gkndviekqd nesksilfhp
      481 rnlsmatmrr lgtriatlnn hqqkkeidtl vlsatsdedn ishihqsskt kltsgtkkge
      541 ekstqqqnee hlmeigqtea adensaeckr kslsvqgady gksgvlddtc vlrasknvpv
      601 kadcreenhr qlkqnceedd gdrpllknad eeniyvldat kegnvgrfln hsccpnlfaq
      661 svfvethnrs fpwvafftnr hvkagteltw nygyeagsmp eteiscqcgv qkckkkil
//
LOCUS       XP_053933871             709 aa            linear   VRT 09-MAR-2023
DEFINITION  histone-lysine N-methyltransferase SETDB2 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053933871
VERSION     XP_053933871.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077896.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..709
                     /product="histone-lysine N-methyltransferase SETDB2
                     isoform X2"
                     /calculated_mol_wt=79889
     Region          173..233
                     /region_name="HMT_MBD"
                     /note="Methyl-CpG binding domains (MBD) present in
                     putative histone methyltransferases (HMT) such as CLLD8
                     and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a
                     bifurcated SET domain, suggesting that CLLD8 might be
                     associated with methylation-mediated...; cd01395"
                     /db_xref="CDD:238689"
     Site            order(185,187,189,195,197,206,209,213)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238689"
     Region          231..708
                     /region_name="SET"
                     /note="SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)
                     domain superfamily; cl40432"
                     /db_xref="CDD:394802"
     Region          253..>320
                     /region_name="PreSET"
                     /note="N-terminal to some SET domains; smart00468"
                     /db_xref="CDD:128744"
     Site            order(379..380,637..642,650..652,681..684)
                     /site_type="active"
                     /db_xref="CDD:380914"
     Site            order(379..380,638..642,683)
                     /site_type="other"
                     /note="SAM binding site [polypeptide binding]"
                     /db_xref="CDD:380914"
     CDS             1..709
                     /gene="SETDB2"
                     /coded_by="XM_054077896.1:540..2669"
                     /db_xref="GeneID:104066150"
ORIGIN      
        1 mrkdhglltr rtififqspc qgctgdlktf wtqlggrrvd nifeqlqnvl lllkqkikng
       61 tatnqeccqa wtmvneanlg dlltltnvsd vpdrddlqvt esklqhlltd dntansveds
      121 hskekemekt gsgskevssk iqdlplnlqy qnhkcssacl anrpmnsykg enplkipilf
      181 hfqrrhakan clsksldvny kapcgrslrn fqdvqnylfe tecnflfvdy fsfntyvllg
      241 rntvnpkplv fdfdishgae svpvsfcnhl dharlpyfky rraswprgyy lnnfssvfvd
      301 scdctdgcid rskcaclqlt vrgcskisls pnsktshgys ykrlegpvps gcdkmmcqnr
      361 vvqhgiqvrl qvfntekkgw gvrclddidk gtfvctysgr lmsraeaqal gdadqglkek
      421 gavndrdcdf sskkrkrdsn ssdcvielvq tgkndviekq dnesksilfh prnlsmatmr
      481 rlgtriatln nhqqkkeidt lvlsatsded nishihqssk tkltsgtkkg eekstqqqne
      541 ehlmeigqte aadensaeck rkslsvqgad ygksgvlddt cvlrasknvp vkadcreenh
      601 rqlkqnceed dgdrpllkna deeniyvlda tkegnvgrfl nhsccpnlfa qsvfvethnr
      661 sfpwvafftn rhvkagtelt wnygyeagsm peteiscqcg vqkckkkil
//
LOCUS       XP_053933878             699 aa            linear   VRT 09-MAR-2023
DEFINITION  histone-lysine N-methyltransferase SETDB2 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053933878
VERSION     XP_053933878.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077903.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..699
                     /product="histone-lysine N-methyltransferase SETDB2
                     isoform X3"
                     /calculated_mol_wt=78858
     Region          154..214
                     /region_name="HMT_MBD"
                     /note="Methyl-CpG binding domains (MBD) present in
                     putative histone methyltransferases (HMT) such as CLLD8
                     and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a
                     bifurcated SET domain, suggesting that CLLD8 might be
                     associated with methylation-mediated...; cd01395"
                     /db_xref="CDD:238689"
     Site            order(166,168,170,176,178,187,190,194)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238689"
     Region          212..698
                     /region_name="SET"
                     /note="SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)
                     domain superfamily; cl40432"
                     /db_xref="CDD:394802"
     Site            order(369..370,627..632,640..642,671..674)
                     /site_type="active"
                     /db_xref="CDD:380914"
     Site            order(369..370,628..632,673)
                     /site_type="other"
                     /note="SAM binding site [polypeptide binding]"
                     /db_xref="CDD:380914"
     CDS             1..699
                     /gene="SETDB2"
                     /coded_by="XM_054077903.1:523..2622"
                     /db_xref="GeneID:104066150"
ORIGIN      
        1 mdeercdlkt fwtqlggrrv dnifeqlqnv llllkqkikn gtatnqeccq awtmvneanl
       61 gdlltltnvs dvpdrddlqv tesklqhllt ddntansved shskekemek tgsgskevss
      121 kiqdlplnlq yqnhkcssac lanrpmnsyk genplkipil fhfqrrhaka nclsksldvn
      181 ykapcgrslr nfqdvqnylf etecnflfvd yfsfntyvll grntvnpkpl vfdfdishga
      241 esvpvsfcnh ldharlpyfk yrraswprgy ylnnfssvfv dscdctdgci drskcaclql
      301 tvrgcskisl spnsktshgy sykrlegpvp sgvyecsvlc rcdkmmcqnr vvqhgiqvrl
      361 qvfntekkgw gvrclddidk gtfvctysgr lmsraeaqal gdadqglkek gavndrdcdf
      421 sskkrkrdsn ssdcvielvq tgkndviekq dnesksilfh prnlsmatmr rlgtriatln
      481 nhqqkkeidt lvlsatsded nishihqssk tkltsgtkkg eekstqqqne ehlmeigqte
      541 aadensaeck rkslsvqgad ygksgvlddt cvlrasknvp vkadcreenh rqlkqnceed
      601 dgdrpllkna deeniyvlda tkegnvgrfl nhsccpnlfa qsvfvethnr sfpwvafftn
      661 rhvkagtelt wnygyeagsm peteiscqcg vqkckkkil
//
LOCUS       XP_053933886             646 aa            linear   VRT 09-MAR-2023
DEFINITION  histone-lysine N-methyltransferase SETDB2 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053933886
VERSION     XP_053933886.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077911.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..646
                     /product="histone-lysine N-methyltransferase SETDB2
                     isoform X4"
                     /calculated_mol_wt=72647
     Region          101..161
                     /region_name="HMT_MBD"
                     /note="Methyl-CpG binding domains (MBD) present in
                     putative histone methyltransferases (HMT) such as CLLD8
                     and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a
                     bifurcated SET domain, suggesting that CLLD8 might be
                     associated with methylation-mediated...; cd01395"
                     /db_xref="CDD:238689"
     Site            order(113,115,117,123,125,134,137,141)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238689"
     Region          159..645
                     /region_name="SET"
                     /note="SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)
                     domain superfamily; cl40432"
                     /db_xref="CDD:394802"
     Site            order(316..317,574..579,587..589,618..621)
                     /site_type="active"
                     /db_xref="CDD:380914"
     Site            order(316..317,575..579,620)
                     /site_type="other"
                     /note="SAM binding site [polypeptide binding]"
                     /db_xref="CDD:380914"
     CDS             1..646
                     /gene="SETDB2"
                     /coded_by="XM_054077911.1:284..2224"
                     /db_xref="GeneID:104066150"
ORIGIN      
        1 mvneanlgdl ltltnvsdvp drddlqvtes klqhlltddn tansvedshs kekemektgs
       61 gskevsskiq dlplnlqyqn hkcssaclan rpmnsykgen plkipilfhf qrrhakancl
      121 sksldvnyka pcgrslrnfq dvqnylfete cnflfvdyfs fntyvllgrn tvnpkplvfd
      181 fdishgaesv pvsfcnhldh arlpyfkyrr aswprgyyln nfssvfvdsc dctdgcidrs
      241 kcaclqltvr gcskislspn sktshgysyk rlegpvpsgv yecsvlcrcd kmmcqnrvvq
      301 hgiqvrlqvf ntekkgwgvr clddidkgtf vctysgrlms raeaqalgda dqglkekgav
      361 ndrdcdfssk krkrdsnssd cvielvqtgk ndviekqdne sksilfhprn lsmatmrrlg
      421 triatlnnhq qkkeidtlvl satsdednis hihqssktkl tsgtkkgeek stqqqneehl
      481 meigqteaad ensaeckrks lsvqgadygk sgvlddtcvl rasknvpvka dcreenhrql
      541 kqnceeddgd rpllknadee niyvldatke gnvgrflnhs ccpnlfaqsv fvethnrsfp
      601 wvafftnrhv kagteltwny gyeagsmpet eiscqcgvqk ckkkil
//
LOCUS       XP_053933902             334 aa            linear   VRT 09-MAR-2023
DEFINITION  calcium-binding protein 39-like [Cuculus canorus].
ACCESSION   XP_053933902
VERSION     XP_053933902.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077927.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..334
                     /product="calcium-binding protein 39-like"
                     /calculated_mol_wt=38735
     Region          3..330
                     /region_name="Mo25"
                     /note="Mo25-like; pfam08569"
                     /db_xref="CDD:462522"
     CDS             1..334
                     /gene="CAB39L"
                     /coded_by="XM_054077927.1:448..1452"
                     /db_xref="GeneID:104066151"
ORIGIN      
        1 mplfskshkn paeivkilke nmtilekqek ktdkaseevs kslqamkeil cgttdkeppt
       61 eivaqlaqel ynsgllvtli anlqlidfeg kkdvsqifnn ilrrqigtrs ptveyisahp
      121 hilfmllkgy espsvalrcg imlrecirhe plakiilfse qfrdffkyve mstfdiasda
      181 fatfkdlltr hkllvaefle qnydvifedy ekllhsenyv tkrqslkllg elildrhnfa
      241 imtkyiskpe nlklmmnllr dkspniqfea fhvfkvfvas pnktqpivei llknqpklie
      301 flsnfqkert ddeqftdekn ylikqirdlk kpta
//
LOCUS       XP_053933912             334 aa            linear   VRT 09-MAR-2023
DEFINITION  calcium-binding protein 39-like [Cuculus canorus].
ACCESSION   XP_053933912
VERSION     XP_053933912.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077937.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..334
                     /product="calcium-binding protein 39-like"
                     /calculated_mol_wt=38735
     Region          3..330
                     /region_name="Mo25"
                     /note="Mo25-like; pfam08569"
                     /db_xref="CDD:462522"
     CDS             1..334
                     /gene="CAB39L"
                     /coded_by="XM_054077937.1:242..1246"
                     /db_xref="GeneID:104066151"
ORIGIN      
        1 mplfskshkn paeivkilke nmtilekqek ktdkaseevs kslqamkeil cgttdkeppt
       61 eivaqlaqel ynsgllvtli anlqlidfeg kkdvsqifnn ilrrqigtrs ptveyisahp
      121 hilfmllkgy espsvalrcg imlrecirhe plakiilfse qfrdffkyve mstfdiasda
      181 fatfkdlltr hkllvaefle qnydvifedy ekllhsenyv tkrqslkllg elildrhnfa
      241 imtkyiskpe nlklmmnllr dkspniqfea fhvfkvfvas pnktqpivei llknqpklie
      301 flsnfqkert ddeqftdekn ylikqirdlk kpta
//
LOCUS       XP_053933922             334 aa            linear   VRT 09-MAR-2023
DEFINITION  calcium-binding protein 39-like [Cuculus canorus].
ACCESSION   XP_053933922
VERSION     XP_053933922.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077947.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..334
                     /product="calcium-binding protein 39-like"
                     /calculated_mol_wt=38735
     Region          3..330
                     /region_name="Mo25"
                     /note="Mo25-like; pfam08569"
                     /db_xref="CDD:462522"
     CDS             1..334
                     /gene="CAB39L"
                     /coded_by="XM_054077947.1:163..1167"
                     /db_xref="GeneID:104066151"
ORIGIN      
        1 mplfskshkn paeivkilke nmtilekqek ktdkaseevs kslqamkeil cgttdkeppt
       61 eivaqlaqel ynsgllvtli anlqlidfeg kkdvsqifnn ilrrqigtrs ptveyisahp
      121 hilfmllkgy espsvalrcg imlrecirhe plakiilfse qfrdffkyve mstfdiasda
      181 fatfkdlltr hkllvaefle qnydvifedy ekllhsenyv tkrqslkllg elildrhnfa
      241 imtkyiskpe nlklmmnllr dkspniqfea fhvfkvfvas pnktqpivei llknqpklie
      301 flsnfqkert ddeqftdekn ylikqirdlk kpta
//
LOCUS       XP_009567014             284 aa            linear   VRT 09-MAR-2023
DEFINITION  PHD finger protein 11 [Cuculus canorus].
ACCESSION   XP_009567014
VERSION     XP_009567014.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568719.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567014.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..284
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..284
                     /product="PHD finger protein 11"
                     /calculated_mol_wt=32341
     Region          9..123
                     /region_name="PHD_SF"
                     /note="PHD finger superfamily; cl22851"
                     /db_xref="CDD:473978"
     Site            order(73,83..86,92,118)
                     /site_type="other"
                     /note="histone H3 binding site [polypeptide binding]"
                     /db_xref="CDD:276966"
     CDS             1..284
                     /gene="PHF11"
                     /coded_by="XM_009568719.2:451..1305"
                     /db_xref="GeneID:104066149"
ORIGIN      
        1 makmvrrtca fcsegeagsv myiakdrnia ahqdcllfss gfveseeynp enldlrfdvt
       61 svlkelkrgk rlvcnfcrkk gatvgceera crrsyhyfca lcddaaietd evngvyrvfc
      121 pkhdpssrtn hygaankrrr halkssaite qmsteetaee nslrilkrkn nrhkvridfl
      181 rkckqaglld difeemldtl hlaqeklmdd ntseteyeet vislfdcglf eniltnihsg
      241 teekiqelle srkrldnkie llqelkevis tpentastss tase
//
LOCUS       XP_053933945             479 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein ZIC 2 [Cuculus canorus].
ACCESSION   XP_053933945
VERSION     XP_053933945.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077970.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..479
                     /product="zinc finger protein ZIC 2"
                     /calculated_mol_wt=51124
     Region          226..271
                     /region_name="zf_ZIC"
                     /note="Zic proteins zinc finger domain; pfam18366"
                     /db_xref="CDD:436441"
     Region          283..303
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(288,290,292,294..295,298..299,302,318,320,324..325,
                     328..329,332,348,350,352,354..355,358..359,362)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          <305..389
                     /region_name="SFP1"
                     /note="Putative transcriptional repressor regulating G2/M
                     transition [Transcription / Cell division and chromosome
                     partitioning]; COG5189"
                     /db_xref="CDD:227516"
     Region          311..333
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          341..363
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          371..391
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..479
                     /gene="ZIC2"
                     /coded_by="XM_054077970.1:59..1498"
                     /db_xref="GeneID:104057314"
ORIGIN      
        1 mlldagpqfp algvgtfarh hhsaaaemqd relslaaqns fvdsaaahmg afklnagahd
       61 lspgqssaft sqapgypaaa lgphaahvgs ysgapfnstr dflfrsrgfg dsspaggqhg
      121 ifgpaagslh hphtdaqshl lfpgihdqhg phasqnvlng qmrlglpgev farsdqyrqv
      181 ssprtdpysa aqlhnqygpm nmnmgmnmaa hhhhhpgaff rymrqqcikq elickwidpe
      241 qlnnpkkscn ktfstmhelv thvsvehvgg peqsnhvcyw eecpregkpf kakyklvnhi
      301 rvhtgekpfp cpfpgcgkvf arsenlkihk rthtgekpfq cefegcdrrf anssdrkkhm
      361 hvhtsdkpyl ckmcdksyth psslrkhmkv hesspqgses spaassgyes stppglvsps
      421 aesqsntnls paaaaaaaaa aaaavsavhr gggggggsgg gggggghsgl ssnfnewyv
//
LOCUS       XP_053933957             166 aa            linear   VRT 09-MAR-2023
DEFINITION  regulator of cell cycle RGCC [Cuculus canorus].
ACCESSION   XP_053933957
VERSION     XP_053933957.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054077982.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..166
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..166
                     /product="regulator of cell cycle RGCC"
                     /calculated_mol_wt=17658
     Region          40..166
                     /region_name="RGCC"
                     /note="Response gene to complement 32 protein family;
                     pfam15151"
                     /db_xref="CDD:464535"
     CDS             1..166
                     /gene="RGCC"
                     /coded_by="XM_054077982.1:16..516"
                     /db_xref="GeneID:104056536"
ORIGIN      
        1 mrispspsss sprpascsgh krrrgrrwrr eagggapaam kppqaraall edggggdlae
       61 algefdavla efscpagrrr fcfeehlerm krrssnsnse gsglsdcdsa dslcrnsfsl
      121 sdeklnspta tpsllspsvt pckaklgdtk eleefiadld rtlasm
//
LOCUS       XP_009566699             134 aa            linear   VRT 09-MAR-2023
DEFINITION  galectin-1 [Cuculus canorus].
ACCESSION   XP_009566699
VERSION     XP_009566699.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568404.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..134
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..134
                     /product="galectin-1"
                     /calculated_mol_wt=14656
     Site            order(6..10,127..132)
                     /site_type="other"
                     /note="dimerization interface [polypeptide binding]"
                     /db_xref="CDD:238025"
     Site            6..10
                     /site_type="active"
                     /note="dimerization swap strand [active]"
                     /db_xref="CDD:238025"
     Region          11..134
                     /region_name="GLECT"
                     /note="Galectin; smart00276"
                     /db_xref="CDD:214596"
     Site            order(13..15,18,21,91..93,98,100,103)
                     /site_type="other"
                     /note="putative alternate dimerization interface
                     [polypeptide binding]"
                     /db_xref="CDD:238025"
     Site            order(45,47,49,60,62,69,72,74)
                     /site_type="other"
                     /note="sugar binding pocket [chemical binding]"
                     /db_xref="CDD:238025"
     CDS             1..134
                     /gene="LGALS1"
                     /coded_by="XM_009568404.2:128..532"
                     /db_xref="GeneID:104065872"
ORIGIN      
        1 mscgpvctnl glkpgqrltv kgkiapnaks fvmnlgkdas tlglhfnprf dahgdvntiv
       61 cnskkveewg aehresnfpf qkggtaeitf avnqndltvh lpghqftfpn rlglsvfdyf
      121 dtqgdftlqs lswe
//
LOCUS       XP_053933977             510 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-1,3-glucosyltransferase isoform X1 [Cuculus canorus].
ACCESSION   XP_053933977
VERSION     XP_053933977.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078002.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..510
                     /product="beta-1,3-glucosyltransferase isoform X1"
                     /calculated_mol_wt=57469
     Region          276..479
                     /region_name="Galactosyl_T"
                     /note="Galactosyltransferase; cl21608"
                     /db_xref="CDD:473923"
     CDS             1..510
                     /gene="B3GLCT"
                     /coded_by="XM_054078002.1:83..1615"
                     /db_xref="GeneID:104064238"
ORIGIN      
        1 mprergcgrc lllaacalll rpplrsrafa vnvipgsaed etelpvlqkc ekrgtirkis
       61 qelkeivfvi qsqsnsfhsk raedlkrdil kqaadlgkel ptvllihemd ghegawtilp
      121 lmkdfsvtyg rnsswiffce edtriqvvkl letlgrfdgs kecflgkaly deestiihhy
      181 afaenptafk fpdfaagwal siplvnklae klkseplksd ftidlkheia lyiwqkgegp
      241 hltpvpefct ddvssykadh cattfsnflp lcgepvkked ifiavktcqk fhgdripvvk
      301 qtwereaali eyysdyadis iptidlgipn tdrghcgktf ailerflnhs sprtpwlviv
      361 dddtlisifr lrkllscydp nepvflgery gyglgtggys yitggggmvf sriavqklla
      421 skcrcysmda pddmvlgmcf sglgipiths plfhqarpmd ypkgylshqi pisfhkhwni
      481 dpvkvyftwl apnteeslng kkvgynredl
//
LOCUS       XP_053933985             470 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-1,3-glucosyltransferase isoform X2 [Cuculus canorus].
ACCESSION   XP_053933985
VERSION     XP_053933985.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078010.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..470
                     /product="beta-1,3-glucosyltransferase isoform X2"
                     /calculated_mol_wt=53209
     Region          276..439
                     /region_name="Galactosyl_T"
                     /note="Galactosyltransferase; cl21608"
                     /db_xref="CDD:473923"
     CDS             1..470
                     /gene="B3GLCT"
                     /coded_by="XM_054078010.1:83..1495"
                     /db_xref="GeneID:104064238"
ORIGIN      
        1 mprergcgrc lllaacalll rpplrsrafa vnvipgsaed etelpvlqkc ekrgtirkis
       61 qelkeivfvi qsqsnsfhsk raedlkrdil kqaadlgkel ptvllihemd ghegawtilp
      121 lmkdfsvtyg rnsswiffce edtriqvvkl letlgrfdgs kecflgkaly deestiihhy
      181 afaenptafk fpdfaagwal siplvnklae klkseplksd ftidlkheia lyiwqkgegp
      241 hltpvpefct ddvssykadh cattfsnflp lcgepvkked ifiavktcqk fhgdripvvk
      301 qtwereaali eyysdyadis iptidlgipn tdrghcgktf ailerflnhs sprtpwlviv
      361 dddtlirmvf sriavqklla skcrcysmda pddmvlgmcf sglgipiths plfhqarpmd
      421 ypkgylshqi pisfhkhwni dpvkvyftwl apnteeslng kkvgynredl
//
LOCUS       XP_053933996             443 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-1,3-glucosyltransferase isoform X3 [Cuculus canorus].
ACCESSION   XP_053933996
VERSION     XP_053933996.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078021.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..443
                     /product="beta-1,3-glucosyltransferase isoform X3"
                     /calculated_mol_wt=49890
     Region          209..412
                     /region_name="Galactosyl_T"
                     /note="Galactosyltransferase; cl21608"
                     /db_xref="CDD:473923"
     CDS             1..443
                     /gene="B3GLCT"
                     /coded_by="XM_054078021.1:83..1414"
                     /db_xref="GeneID:104064238"
ORIGIN      
        1 mprergcgrc lllaacalll rpplrsrafa vnvipgsaed etelpvlqkc ekrgtirkis
       61 qelkeivfvi qsqsnsfhsk raedlkrdil kqaadlgkel ptvllihemd ghegawtilp
      121 lmkdfsvtyg rnsswiffce edtriqvvkl letlgrfdgs kialyiwqkg egphltpvpe
      181 fctddvssyk adhcattfsn flplcgepvk kedifiavkt cqkfhgdrip vvkqtwerea
      241 alieyysdya disiptidlg ipntdrghcg ktfailerfl nhssprtpwl vivdddtlis
      301 ifrlrkllsc ydpnepvflg erygyglgtg gysyitgggg mvfsriavqk llaskcrcys
      361 mdapddmvlg mcfsglgipi thsplfhqar pmdypkgyls hqipisfhkh wnidpvkvyf
      421 twlapntees lngkkvgynr edl
//
LOCUS       XP_053933999             434 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-1,3-glucosyltransferase isoform X4 [Cuculus canorus].
ACCESSION   XP_053933999
VERSION     XP_053933999.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078024.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..434
                     /product="beta-1,3-glucosyltransferase isoform X4"
                     /calculated_mol_wt=48908
     Region          276..>389
                     /region_name="Galactosyl_T"
                     /note="Galactosyltransferase; cl21608"
                     /db_xref="CDD:473923"
     CDS             1..434
                     /gene="B3GLCT"
                     /coded_by="XM_054078024.1:83..1387"
                     /db_xref="GeneID:104064238"
ORIGIN      
        1 mprergcgrc lllaacalll rpplrsrafa vnvipgsaed etelpvlqkc ekrgtirkis
       61 qelkeivfvi qsqsnsfhsk raedlkrdil kqaadlgkel ptvllihemd ghegawtilp
      121 lmkdfsvtyg rnsswiffce edtriqvvkl letlgrfdgs kecflgkaly deestiihhy
      181 afaenptafk fpdfaagwal siplvnklae klkseplksd ftidlkheia lyiwqkgegp
      241 hltpvpefct ddvssykadh cattfsnflp lcgepvkked ifiavktcqk fhgdripvvk
      301 qtwereaali eyysdyadis iptidlgipn tdrghcgktf ailerflnhs sprtpwlviv
      361 dddtlisifr lrkllscydp nepvflgery gyglgtggys yitgggghgq wttqratflt
      421 rfqyhftstg iliq
//
LOCUS       XP_053934006            1767 aa            linear   VRT 09-MAR-2023
DEFINITION  FERM and PDZ domain-containing protein 4 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053934006
VERSION     XP_053934006.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078031.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1767
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1767
                     /product="FERM and PDZ domain-containing protein 4 isoform
                     X1"
                     /calculated_mol_wt=194932
     Region          37..67
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(51,62)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          79..153
                     /region_name="PDZ_FRMPD1_3_4-like"
                     /note="PDZ domain of FERM and PDZ domain-containing
                     protein 1 (FRMPD1), FRMPD3, FRMPD4, and related domains;
                     cd06769"
                     /db_xref="CDD:467250"
     Site            order(89..95,103,106,134,138,141..142)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467250"
     Region          202..295
                     /region_name="FERM_F1_FRMPD4"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F1 sub-domain, found in FERM and PDZ
                     domain-containing protein 4 (FRMPD4); cd17170"
                     /db_xref="CDD:340690"
     Region          206..425
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Region          421..525
                     /region_name="FERM_C_FRMPD1_FRMPD3_FRMPD4"
                     /note="FERM domain C-lobe of FERM and PDZ domain
                     containing proteins 1, 3, and 4 (FRMPD1, 3, 4); cd13183"
                     /db_xref="CDD:270004"
     Site            order(429,450,452,460)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:270004"
     Site            order(464,470..473,506,510,513..514)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270004"
     Site            506..517
                     /site_type="other"
                     /note="putative actin binding site 2 [polypeptide
                     binding]"
                     /db_xref="CDD:270004"
     Region          975..1023
                     /region_name="LGNbd_FRMPD4"
                     /note="LGN tetratricopeptide repeat-binding domain found
                     in FERM and PDZ domain-containing protein 4; cd21943"
                     /db_xref="CDD:409274"
     Site            order(988..992,994..1010,1012)
                     /site_type="other"
                     /note="TPR binding site [polypeptide binding]"
                     /db_xref="CDD:409274"
     CDS             1..1767
                     /gene="FRMPD4"
                     /coded_by="XM_054078031.1:69..5372"
                     /db_xref="GeneID:104054889"
ORIGIN      
        1 mdvydnplgi ftvihhrnks sgwphssgtw slnqgtpygw emtanrdgrd yfinhmtqsa
       61 tfedpriesc qitppaprkv emrrdpvlgf gfvagsekpv vvrsvtpggp segklipgdq
      121 iimindepvs taprervidl vrsckesill tvvqpypspk safisaakka rlksnpvkvr
      181 fseeviingq vsetvkdnsl lfmpnvlkvy lengqtksfr fdcstsikdv iltlqeklsi
      241 kciehfslml eqrvegsgtk llllheqetl tqvtqrpssh kmrclfrisf vpkdpidllr
      301 rdpvafeyly vqscndvvqe rfgpelkydi alrlaalqmy iatvttkqtq kislkyieke
      361 wgletflpsa vlqsmkekni kkalshlvka nqnlvppgkk lsalqakvhy lkflsdlrly
      421 ggrvfkatlv qgekrsevtl lvgprygish vintktnlva lladfshvnr iemftedess
      481 vrvelhvldv kpitllmess damnlaclta gyyrllvdsr rsifnmankk ntgsretgae
      541 nrgklnllas ewncipkttt flaegdqetq vafadpkqks ldvsesllcq kehrhlyien
      601 aynsggfdqh lakqsdptea eesrnfnqps llslsgless kkaqdsprga kvsfifgdhn
      661 ldginpqtlg yerlldespe vlekqraiyi snandikgle laqdaesiqf atnsvyatin
      721 dgkifgtaeg ieepllhdic yaentddaed edevsceedi mvgeinrpal lnlsgssddi
      781 idltslpppe gddneddfll htlnmaiaap ppgfrdssde edsqnqatqp rdnkeqasnl
      841 gnddipvsli davptntegk cekglddavv stlqaleala aseeqqtndn sgvailrays
      901 pesssdsgne tnssemtess elaaaqkqse ntarmfltts egyqplveeq tefpiaknqa
      961 ggqgmkpsqp lagrqaaelq skvvpskqil hsdnmemepe tmetksvtdy fsklhmgslv
     1021 ysctskrknk mtdsevkaps dgsatvkkqq gtkkaetded lkakfgtlsa rdsqrlstfn
     1081 vertafrqrw yaaddgaadk pspetvngkt fprvpvlgkt etdckdevdp evdqddtsrl
     1141 sqgenflsdm tpvssakdln daedtdlsad dhpsklpeae qsvarlceyh lakrmsslqs
     1201 eghfslqssq cssvdagcst gsstcatpve splctsdvkh iisdssmkgi ayipaderaa
     1261 ilpnhgttyk dlhqqpeavc hrmtvpvvhs ainaeplfgt lregchripk ikettaftep
     1321 gkgrqggmpt afprqplads imlssmlses kvpsknqdsc dipkvnqacg atvslrpydm
     1381 iggslrmphn rkvlrrssss ssiggtagie mlfekkaata slkclditqr eeskterkve
     1441 lplgkklsks ysqscvyvst drkdnkrcsg agasqkdskq crtlplrkld tstwrcrgpf
     1501 sycflsrgsd dnddeddgds hqlsclfeeq iprelaepvg qlfsseneqk vlespkaaep
     1561 pqdeavnvhe kssadiqdgq idvnlndvaf daritrinvm kekiysmpdg fiaaqkdane
     1621 llslvrasmg kredlhpety dlklskykql lsmesrqlgs acrkmamadk speemllamt
     1681 ssfqvlcclt eacmrlvkvm nsetqqqeii akidkvviny icllkaaeav sgktssdpsi
     1741 kllaqhsttm aaivstltrs lkmllnk
//
LOCUS       XP_053934015            1766 aa            linear   VRT 09-MAR-2023
DEFINITION  FERM and PDZ domain-containing protein 4 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053934015
VERSION     XP_053934015.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078040.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1766
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1766
                     /product="FERM and PDZ domain-containing protein 4 isoform
                     X2"
                     /calculated_mol_wt=194726
     Region          36..66
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(50,61)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          78..152
                     /region_name="PDZ_FRMPD1_3_4-like"
                     /note="PDZ domain of FERM and PDZ domain-containing
                     protein 1 (FRMPD1), FRMPD3, FRMPD4, and related domains;
                     cd06769"
                     /db_xref="CDD:467250"
     Site            order(88..94,102,105,133,137,140..141)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467250"
     Region          201..294
                     /region_name="FERM_F1_FRMPD4"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F1 sub-domain, found in FERM and PDZ
                     domain-containing protein 4 (FRMPD4); cd17170"
                     /db_xref="CDD:340690"
     Region          205..424
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Region          420..524
                     /region_name="FERM_C_FRMPD1_FRMPD3_FRMPD4"
                     /note="FERM domain C-lobe of FERM and PDZ domain
                     containing proteins 1, 3, and 4 (FRMPD1, 3, 4); cd13183"
                     /db_xref="CDD:270004"
     Site            order(428,449,451,459)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:270004"
     Site            order(463,469..472,505,509,512..513)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270004"
     Site            505..516
                     /site_type="other"
                     /note="putative actin binding site 2 [polypeptide
                     binding]"
                     /db_xref="CDD:270004"
     Region          974..1022
                     /region_name="LGNbd_FRMPD4"
                     /note="LGN tetratricopeptide repeat-binding domain found
                     in FERM and PDZ domain-containing protein 4; cd21943"
                     /db_xref="CDD:409274"
     Site            order(987..991,993..1009,1011)
                     /site_type="other"
                     /note="TPR binding site [polypeptide binding]"
                     /db_xref="CDD:409274"
     CDS             1..1766
                     /gene="FRMPD4"
                     /coded_by="XM_054078040.1:352..5652"
                     /db_xref="GeneID:104054889"
ORIGIN      
        1 mdvfsfvkig klsghrnkss gwphssgtws lnqgtpygwe mtanrdgrdy finhmtqsat
       61 fedpriescq itppaprkve mrrdpvlgfg fvagsekpvv vrsvtpggps egklipgdqi
      121 imindepvst aprervidlv rsckesillt vvqpypspks afisaakkar lksnpvkvrf
      181 seeviingqv setvkdnsll fmpnvlkvyl engqtksfrf dcstsikdvi ltlqeklsik
      241 ciehfslmle qrvegsgtkl lllheqetlt qvtqrpsshk mrclfrisfv pkdpidllrr
      301 dpvafeylyv qscndvvqer fgpelkydia lrlaalqmyi atvttkqtqk islkyiekew
      361 gletflpsav lqsmkeknik kalshlvkan qnlvppgkkl salqakvhyl kflsdlrlyg
      421 grvfkatlvq gekrsevtll vgprygishv intktnlval ladfshvnri emftedessv
      481 rvelhvldvk pitllmessd amnlacltag yyrllvdsrr sifnmankkn tgsretgaen
      541 rgklnllase wncipktttf laegdqetqv afadpkqksl dvsesllcqk ehrhlyiena
      601 ynsggfdqhl akqsdpteae esrnfnqpsl lslsglessk kaqdsprgak vsfifgdhnl
      661 dginpqtlgy erlldespev lekqraiyis nandikglel aqdaesiqfa tnsvyatind
      721 gkifgtaegi eepllhdicy aentddaede devsceedim vgeinrpall nlsgssddii
      781 dltslpppeg ddneddfllh tlnmaiaapp pgfrdssdee dsqnqatqpr dnkeqasnlg
      841 nddipvslid avptntegkc ekglddavvs tlqalealaa seeqqtndns gvailraysp
      901 esssdsgnet nssemtesse laaaqkqsen tarmflttse gyqplveeqt efpiaknqag
      961 gqgmkpsqpl agrqaaelqs kvvpskqilh sdnmemepet metksvtdyf sklhmgslvy
     1021 sctskrknkm tdsevkapsd gsatvkkqqg tkkaetdedl kakfgtlsar dsqrlstfnv
     1081 ertafrqrwy aaddgaadkp spetvngktf prvpvlgkte tdckdevdpe vdqddtsrls
     1141 qgenflsdmt pvssakdlnd aedtdlsadd hpsklpeaeq svarlceyhl akrmsslqse
     1201 ghfslqssqc ssvdagcstg sstcatpves plctsdvkhi isdssmkgia yipaderaai
     1261 lpnhgttykd lhqqpeavch rmtvpvvhsa inaeplfgtl regchripki kettaftepg
     1321 kgrqggmpta fprqpladsi mlssmlsesk vpsknqdscd ipkvnqacga tvslrpydmi
     1381 ggslrmphnr kvlrrsssss siggtagiem lfekkaatas lkclditqre eskterkvel
     1441 plgkklsksy sqscvyvstd rkdnkrcsga gasqkdskqc rtlplrkldt stwrcrgpfs
     1501 ycflsrgsdd nddeddgdsh qlsclfeeqi prelaepvgq lfsseneqkv lespkaaepp
     1561 qdeavnvhek ssadiqdgqi dvnlndvafd aritrinvmk ekiysmpdgf iaaqkdanel
     1621 lslvrasmgk redlhpetyd lklskykqll smesrqlgsa crkmamadks peemllamts
     1681 sfqvlcclte acmrlvkvmn setqqqeiia kidkvvinyi cllkaaeavs gktssdpsik
     1741 llaqhsttma aivstltrsl kmllnk
//
LOCUS       XP_053934026            1726 aa            linear   VRT 09-MAR-2023
DEFINITION  FERM and PDZ domain-containing protein 4 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053934026
VERSION     XP_053934026.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078051.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1726
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1726
                     /product="FERM and PDZ domain-containing protein 4 isoform
                     X3"
                     /calculated_mol_wt=190277
     Region          <5..26
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(10,21)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          38..112
                     /region_name="PDZ_FRMPD1_3_4-like"
                     /note="PDZ domain of FERM and PDZ domain-containing
                     protein 1 (FRMPD1), FRMPD3, FRMPD4, and related domains;
                     cd06769"
                     /db_xref="CDD:467250"
     Site            order(48..54,62,65,93,97,100..101)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467250"
     Region          161..254
                     /region_name="FERM_F1_FRMPD4"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F1 sub-domain, found in FERM and PDZ
                     domain-containing protein 4 (FRMPD4); cd17170"
                     /db_xref="CDD:340690"
     Region          165..384
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Region          380..484
                     /region_name="FERM_C_FRMPD1_FRMPD3_FRMPD4"
                     /note="FERM domain C-lobe of FERM and PDZ domain
                     containing proteins 1, 3, and 4 (FRMPD1, 3, 4); cd13183"
                     /db_xref="CDD:270004"
     Site            order(388,409,411,419)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:270004"
     Site            order(423,429..432,465,469,472..473)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270004"
     Site            465..476
                     /site_type="other"
                     /note="putative actin binding site 2 [polypeptide
                     binding]"
                     /db_xref="CDD:270004"
     Region          934..982
                     /region_name="LGNbd_FRMPD4"
                     /note="LGN tetratricopeptide repeat-binding domain found
                     in FERM and PDZ domain-containing protein 4; cd21943"
                     /db_xref="CDD:409274"
     Site            order(947..951,953..969,971)
                     /site_type="other"
                     /note="TPR binding site [polypeptide binding]"
                     /db_xref="CDD:409274"
     CDS             1..1726
                     /gene="FRMPD4"
                     /coded_by="XM_054078051.1:104..5284"
                     /db_xref="GeneID:104054889"
ORIGIN      
        1 mtanrdgrdy finhmtqsat fedpriescq itppaprkve mrrdpvlgfg fvagsekpvv
       61 vrsvtpggps egklipgdqi imindepvst aprervidlv rsckesillt vvqpypspks
      121 afisaakkar lksnpvkvrf seeviingqv setvkdnsll fmpnvlkvyl engqtksfrf
      181 dcstsikdvi ltlqeklsik ciehfslmle qrvegsgtkl lllheqetlt qvtqrpsshk
      241 mrclfrisfv pkdpidllrr dpvafeylyv qscndvvqer fgpelkydia lrlaalqmyi
      301 atvttkqtqk islkyiekew gletflpsav lqsmkeknik kalshlvkan qnlvppgkkl
      361 salqakvhyl kflsdlrlyg grvfkatlvq gekrsevtll vgprygishv intktnlval
      421 ladfshvnri emftedessv rvelhvldvk pitllmessd amnlacltag yyrllvdsrr
      481 sifnmankkn tgsretgaen rgklnllase wncipktttf laegdqetqv afadpkqksl
      541 dvsesllcqk ehrhlyiena ynsggfdqhl akqsdpteae esrnfnqpsl lslsglessk
      601 kaqdsprgak vsfifgdhnl dginpqtlgy erlldespev lekqraiyis nandikglel
      661 aqdaesiqfa tnsvyatind gkifgtaegi eepllhdicy aentddaede devsceedim
      721 vgeinrpall nlsgssddii dltslpppeg ddneddfllh tlnmaiaapp pgfrdssdee
      781 dsqnqatqpr dnkeqasnlg nddipvslid avptntegkc ekglddavvs tlqalealaa
      841 seeqqtndns gvailraysp esssdsgnet nssemtesse laaaqkqsen tarmflttse
      901 gyqplveeqt efpiaknqag gqgmkpsqpl agrqaaelqs kvvpskqilh sdnmemepet
      961 metksvtdyf sklhmgslvy sctskrknkm tdsevkapsd gsatvkkqqg tkkaetdedl
     1021 kakfgtlsar dsqrlstfnv ertafrqrwy aaddgaadkp spetvngktf prvpvlgkte
     1081 tdckdevdpe vdqddtsrls qgenflsdmt pvssakdlnd aedtdlsadd hpsklpeaeq
     1141 svarlceyhl akrmsslqse ghfslqssqc ssvdagcstg sstcatpves plctsdvkhi
     1201 isdssmkgia yipaderaai lpnhgttykd lhqqpeavch rmtvpvvhsa inaeplfgtl
     1261 regchripki kettaftepg kgrqggmpta fprqpladsi mlssmlsesk vpsknqdscd
     1321 ipkvnqacga tvslrpydmi ggslrmphnr kvlrrsssss siggtagiem lfekkaatas
     1381 lkclditqre eskterkvel plgkklsksy sqscvyvstd rkdnkrcsga gasqkdskqc
     1441 rtlplrkldt stwrcrgpfs ycflsrgsdd nddeddgdsh qlsclfeeqi prelaepvgq
     1501 lfsseneqkv lespkaaepp qdeavnvhek ssadiqdgqi dvnlndvafd aritrinvmk
     1561 ekiysmpdgf iaaqkdanel lslvrasmgk redlhpetyd lklskykqll smesrqlgsa
     1621 crkmamadks peemllamts sfqvlcclte acmrlvkvmn setqqqeiia kidkvvinyi
     1681 cllkaaeavs gktssdpsik llaqhsttma aivstltrsl kmllnk
//
LOCUS       XP_053934030            1316 aa            linear   VRT 09-MAR-2023
DEFINITION  FERM and PDZ domain-containing protein 4 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053934030
VERSION     XP_053934030.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078055.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1316
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1316
                     /product="FERM and PDZ domain-containing protein 4 isoform
                     X4"
                     /calculated_mol_wt=145183
     Region          37..67
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(51,62)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          79..153
                     /region_name="PDZ_FRMPD1_3_4-like"
                     /note="PDZ domain of FERM and PDZ domain-containing
                     protein 1 (FRMPD1), FRMPD3, FRMPD4, and related domains;
                     cd06769"
                     /db_xref="CDD:467250"
     Site            order(89..95,103,106,134,138,141..142)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467250"
     Region          202..295
                     /region_name="FERM_F1_FRMPD4"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F1 sub-domain, found in FERM and PDZ
                     domain-containing protein 4 (FRMPD4); cd17170"
                     /db_xref="CDD:340690"
     Region          206..425
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Region          421..525
                     /region_name="FERM_C_FRMPD1_FRMPD3_FRMPD4"
                     /note="FERM domain C-lobe of FERM and PDZ domain
                     containing proteins 1, 3, and 4 (FRMPD1, 3, 4); cd13183"
                     /db_xref="CDD:270004"
     Site            order(429,450,452,460)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:270004"
     Site            order(464,470..473,506,510,513..514)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270004"
     Site            506..517
                     /site_type="other"
                     /note="putative actin binding site 2 [polypeptide
                     binding]"
                     /db_xref="CDD:270004"
     Region          975..1023
                     /region_name="LGNbd_FRMPD4"
                     /note="LGN tetratricopeptide repeat-binding domain found
                     in FERM and PDZ domain-containing protein 4; cd21943"
                     /db_xref="CDD:409274"
     Site            order(988..992,994..1010,1012)
                     /site_type="other"
                     /note="TPR binding site [polypeptide binding]"
                     /db_xref="CDD:409274"
     CDS             1..1316
                     /gene="FRMPD4"
                     /coded_by="XM_054078055.1:72..4022"
                     /db_xref="GeneID:104054889"
ORIGIN      
        1 mdvydnplgi ftvihhrnks sgwphssgtw slnqgtpygw emtanrdgrd yfinhmtqsa
       61 tfedpriesc qitppaprkv emrrdpvlgf gfvagsekpv vvrsvtpggp segklipgdq
      121 iimindepvs taprervidl vrsckesill tvvqpypspk safisaakka rlksnpvkvr
      181 fseeviingq vsetvkdnsl lfmpnvlkvy lengqtksfr fdcstsikdv iltlqeklsi
      241 kciehfslml eqrvegsgtk llllheqetl tqvtqrpssh kmrclfrisf vpkdpidllr
      301 rdpvafeyly vqscndvvqe rfgpelkydi alrlaalqmy iatvttkqtq kislkyieke
      361 wgletflpsa vlqsmkekni kkalshlvka nqnlvppgkk lsalqakvhy lkflsdlrly
      421 ggrvfkatlv qgekrsevtl lvgprygish vintktnlva lladfshvnr iemftedess
      481 vrvelhvldv kpitllmess damnlaclta gyyrllvdsr rsifnmankk ntgsretgae
      541 nrgklnllas ewncipkttt flaegdqetq vafadpkqks ldvsesllcq kehrhlyien
      601 aynsggfdqh lakqsdptea eesrnfnqps llslsgless kkaqdsprga kvsfifgdhn
      661 ldginpqtlg yerlldespe vlekqraiyi snandikgle laqdaesiqf atnsvyatin
      721 dgkifgtaeg ieepllhdic yaentddaed edevsceedi mvgeinrpal lnlsgssddi
      781 idltslpppe gddneddfll htlnmaiaap ppgfrdssde edsqnqatqp rdnkeqasnl
      841 gnddipvsli davptntegk cekglddavv stlqaleala aseeqqtndn sgvailrays
      901 pesssdsgne tnssemtess elaaaqkqse ntarmfltts egyqplveeq tefpiaknqa
      961 ggqgmkpsqp lagrqaaelq skvvpskqil hsdnmemepe tmetksvtdy fsklhmgslv
     1021 ysctskrknk mtdsevkaps dgsatvkkqq gtkkaetded lkakfgtlsa rdsqrlstfn
     1081 vertafrqrw yaaddgaadk pspetvngkt fprvpvlgkt etdckdevdp evdqddtsrl
     1141 sqgenflsdm tpvssakdln daedtdlsad dhpsklpeae qsvarlceyh lakrmsslqs
     1201 eghfslqssq cssvdagcst gsstcatpve splctsdvkh iisdssmkgi ayipaderaa
     1261 ilpnhgttyk dlhqqpeavc hrmtvpvvhs ainaeplfgt lregchripk ikettv
//
LOCUS       XP_009555336             423 aa            linear   VRT 09-MAR-2023
DEFINITION  queuine tRNA-ribosyltransferase accessory subunit 2 [Cuculus
            canorus].
ACCESSION   XP_009555336
VERSION     XP_009555336.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557041.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555336.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..423
                     /product="queuine tRNA-ribosyltransferase accessory
                     subunit 2"
                     /calculated_mol_wt=46561
     Region          39..411
                     /region_name="TGT"
                     /note="Queuine tRNA-ribosyltransferase; pfam01702"
                     /db_xref="CDD:460299"
     CDS             1..423
                     /gene="QTRT2"
                     /coded_by="XM_009557041.2:66..1337"
                     /db_xref="GeneID:104055854"
ORIGIN      
        1 mqlqrcgagg grlgalaglg rsgaaalplp gcllytrtgs aphltldtlr avrgvppvaq
       61 valpamaeih dvleeykega akfvgmpdtv lycslydpva pcppgyntnk tvslwgssgr
      121 meltaskfmd iqraiqpdwf qcisdgdtif gevsrkrvkr svdrslsfld eclqlleksp
      181 elqgsvmfga ieggdvleer lrsaretakr pvggflldgf qgsamaketk lkliasviae
      241 lpedkpriih gvgkpddvle ciergvdife sffpfqvter gcalvfnyny npdseaadlk
      301 qnkaqdvekn gaeedqdeis kadaemtpfe iflkdkryqd dfgpvlegct cyccqrhtra
      361 yvhhllvtne llagvllmmh nfqhyfsffs airdalrdnk ldqlkelvfr qalqglakak
      421 pgq
//
LOCUS       XP_053934063             886 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 191 [Cuculus canorus].
ACCESSION   XP_053934063
VERSION     XP_053934063.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078088.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..886
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..886
                     /product="coiled-coil domain-containing protein 191"
                     /calculated_mol_wt=105216
     Region          <172..>737
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..886
                     /gene="CCDC191"
                     /coded_by="XM_054078088.1:103..2763"
                     /db_xref="GeneID:104055795"
ORIGIN      
        1 matpgrrrra apqarfdssn sehwikrveq asecavseaf sfqksryqpg pccpvmslet
       61 veqlqdhdea yeeaqellsn wmnsklqlel tskeeevgsv lleersaapl kyeqfddlcs
      121 ylehelesss vqvylqhllq sevlncgime nlrledikek kklvdpriim elrhkqvken
      181 rmrrqkalel qgqekllkks vlskakfqgq eedrrkalke eeeiqrimvk lrkemadkrh
      241 tvaeawrtea krvekrqels vqevpitass prvlkteeqe gekqiksqel lhrihinkqr
      301 cmqqhfsawl kvvlehrikm rrakaladwr cqlkalrawr nytwaqkvaq etqqleahlq
      361 dqnrkkqlsa ehnqrrilhr cflawqcwsq aekekrelqi kreetkrkma qlleavsqgk
      421 ggldrplein kpgtaevnhh qdrqqdkpte tcliqkepdq tkdhshwdav htsysyrkpk
      481 fawkvtlksa apsaqgqavy snqtatlpqq fqaagpkkap aygsrfehrh afqqrlieeq
      541 rqqlqkqqel ilelqenqrl nrakeeaaqa tgvtwslnns aleareenqs icnntthvsl
      601 pvshgpentr avmqgtrpss kltsahpilk ameeraiqra errrkleear qqrekeklaq
      661 lkaeeearqr keaeekeaqq ekrreerrqq klkelekqrr lekdqqlqkk ardhyemvll
      721 rklgmvpwkr lrkqakenll vaqrhhclgl qrkclvmwlq ytqdslkeke sraedfysrt
      781 llrwgfrnwl kykdylsale ervrtlhatc lmrkyirawf dlmmeeksml wkklkiateh
      841 snkrllrnaf kawrqypllm kkerereerr nqlrrrvaei lpdfqt
//
LOCUS       XP_053934072            1481 aa            linear   VRT 09-MAR-2023
DEFINITION  RING finger protein 17 isoform X1 [Cuculus canorus].
ACCESSION   XP_053934072
VERSION     XP_053934072.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078097.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1481
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1481
                     /product="RING finger protein 17 isoform X1"
                     /calculated_mol_wt=167128
     Region          311..468
                     /region_name="TUDOR"
                     /note="Tudor domain; pfam00567"
                     /db_xref="CDD:425754"
     Region          358..430
                     /region_name="Tudor_TDRD4_rpt1"
                     /note="first Tudor domain found in Tudor domain-containing
                     protein 4 (TDRD4) and similar proteins; cd20414"
                     /db_xref="CDD:410485"
     Site            order(367,374,409,412,414)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410485"
     Region          588..683
                     /region_name="Tudor_TDRD4_rpt2"
                     /note="second Tudor domain found in Tudor
                     domain-containing protein 4 (TDRD4) and similar proteins;
                     cd20415"
                     /db_xref="CDD:410486"
     Site            order(622,628,645,648,650)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410486"
     Region          827..908
                     /region_name="Tudor_SF"
                     /note="Tudor domain superfamily; cl02573"
                     /db_xref="CDD:470623"
     Site            order(855,860,862,879,882,884)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410449"
     Region          1112..1179
                     /region_name="Tudor_SF"
                     /note="Tudor domain superfamily; cl02573"
                     /db_xref="CDD:470623"
     Site            order(1122,1126,1128,1144,1147,1149)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410449"
     Region          1335..1439
                     /region_name="Tudor_SF"
                     /note="Tudor domain superfamily; cl02573"
                     /db_xref="CDD:470623"
     Site            order(1348,1352,1354,1373,1376,1378)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410449"
     CDS             1..1481
                     /gene="RNF17"
                     /coded_by="XM_054078097.1:153..4598"
                     /db_xref="GeneID:104055348"
ORIGIN      
        1 msvealdddv gdedsdflgl capedsntte didevlhigv rnlslldngd evlkylelkv
       61 kqegneveen vdrafaelts sllsrkrklc aelmksinty sadiaeakev ieekkkcltg
      121 airlaeelki tpslrthcdl aqvsynlklp vkadlarvys lekrsprlfl ntdeitplik
      181 klgkieweat gheddelyir ldneeemlgc dtessvgnmp lalsreskmk alankldvpk
      241 evkstqvqet lpvichqsip appdspsnrd vvieevfedd leifptddya deqrkkvfkk
      301 etsktgstel vfvshvvnpc hfyvrryfqk kearvletkl enfccnkssy llpsnvlelg
      361 gkifiknret gmwcrgtite liplkskhkk nscpvrhrvc dialleifli dfgssvvlif
      421 sgyvpaerpe tatqtietdd iclfvrkpdq nieaelaaip plavrcslkd lvpknanegw
      481 reeaktkflg mvnntavsmt ifreedgvli vdlrkpplnk isnnmpvslk dalvfldlar
      541 frlqlenhti sqyappkipq egkevsvavc hinsptdfyv qlrerlgsla lskkiqdvyk
      601 yehgkhfeiv cpvegqacva kqedgnwyra qviglpsrqe vmvkyvdfgn vatlavkdir
      661 rvkteflslp ekaircvlay iepykganew nreakerfee mtedklmlcs vvdildntil
      721 svelfdpsav hgrsfsinfq lvkenlasyi pgytesttag pkevwdlple enpetwedkn
      781 tvdvisvrer dlkslsekml qvkisnvvsp skifiqwlss esvlkslqek matiygesqp
      841 qyvkwessmh cavyicalkq wqrgqiiriv sdtsaevlly dsgaektvdi rclrklnenm
      901 kiierlaiec sladirptgg stqwtatvce flsyylsraq vkitiqgsda arplsvkiyc
      961 rvetgqvidi selliekgla frnrtdkanv pcsdskerlk vhleqenarv dgsnsqtsha
     1021 rnsaapeeni tvsgseqksc kmyksllhsg geemykpaai paanffqavv tcvgtdgtiy
     1081 vkpksfeial nklmiemqrn fkcfglpepy cwkkgeaclv khldnmwhrg kvvklggtav
     1141 kvqyidsgci ervapcklyp ttlytdippf cipcqlyktv pignvwklea iqflqdlllt
     1201 drevgirvqe lpdnpwgkls islyfgeisl asfmayhkyc vaedfhdvlq lellqgydiv
     1261 wlsyvlpplp ipgdifpvkv thlvspnkvy vsldpykhlr klsateggas sdaqweslde
     1321 alewcsgnve sipllthfqt empclaeyhd glwyraklvs veksdpvkil vqfvdygnfs
     1381 vvsasslrqm pyevlkypve avqvvlagfk palndrnvkr ipyapewsee alwamidcve
     1441 gkqlsacila lspeitvyly ddeknpvhmk lvemgladld e
//
LOCUS       XP_053934081            1477 aa            linear   VRT 09-MAR-2023
DEFINITION  RING finger protein 17 isoform X2 [Cuculus canorus].
ACCESSION   XP_053934081
VERSION     XP_053934081.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078106.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1477
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1477
                     /product="RING finger protein 17 isoform X2"
                     /calculated_mol_wt=166668
     Region          307..464
                     /region_name="TUDOR"
                     /note="Tudor domain; pfam00567"
                     /db_xref="CDD:425754"
     Region          354..426
                     /region_name="Tudor_TDRD4_rpt1"
                     /note="first Tudor domain found in Tudor domain-containing
                     protein 4 (TDRD4) and similar proteins; cd20414"
                     /db_xref="CDD:410485"
     Site            order(363,370,405,408,410)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410485"
     Region          584..679
                     /region_name="Tudor_TDRD4_rpt2"
                     /note="second Tudor domain found in Tudor
                     domain-containing protein 4 (TDRD4) and similar proteins;
                     cd20415"
                     /db_xref="CDD:410486"
     Site            order(618,624,641,644,646)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410486"
     Region          823..904
                     /region_name="Tudor_SF"
                     /note="Tudor domain superfamily; cl02573"
                     /db_xref="CDD:470623"
     Site            order(851,856,858,875,878,880)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410449"
     Region          1108..1175
                     /region_name="Tudor_SF"
                     /note="Tudor domain superfamily; cl02573"
                     /db_xref="CDD:470623"
     Site            order(1118,1122,1124,1140,1143,1145)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410449"
     Region          1331..1435
                     /region_name="Tudor_SF"
                     /note="Tudor domain superfamily; cl02573"
                     /db_xref="CDD:470623"
     Site            order(1344,1348,1350,1369,1372,1374)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410449"
     CDS             1..1477
                     /gene="RNF17"
                     /coded_by="XM_054078106.1:153..4586"
                     /db_xref="GeneID:104055348"
ORIGIN      
        1 msvealdddv gdedsdflgl capedsntte didevlhigv rnlslldngd evlkylelkv
       61 kqegneveen vdrafaelts sllsrkrklc aelmksinty sadiaeakev ieekkkcltg
      121 airlaeelki tpslrthcdl aqvsynlklp vkadlarvys lekrsprlfl ntdeitplik
      181 klgkieweat gheddelyir ldneeemlgc dtessvgnmp lalsreskmk alankldvpk
      241 evkstqvqet lpvichqsip appdspsnrd vvieevfedd lendyadeqr kkvfkketsk
      301 tgstelvfvs hvvnpchfyv rryfqkkear vletklenfc cnkssyllps nvlelggkif
      361 iknretgmwc rgtitelipl kskhkknscp vrhrvcdial leiflidfgs svvlifsgyv
      421 paerpetatq tietddiclf vrkpdqniea elaaipplav rcslkdlvpk nanegwreea
      481 ktkflgmvnn tavsmtifre edgvlivdlr kpplnkisnn mpvslkdalv fldlarfrlq
      541 lenhtisqya ppkipqegke vsvavchins ptdfyvqlre rlgslalskk iqdvykyehg
      601 khfeivcpve gqacvakqed gnwyraqvig lpsrqevmvk yvdfgnvatl avkdirrvkt
      661 eflslpekai rcvlayiepy kganewnrea kerfeemted klmlcsvvdi ldntilsvel
      721 fdpsavhgrs fsinfqlvke nlasyipgyt esttagpkev wdlpleenpe twedkntvdv
      781 isvrerdlks lsekmlqvki snvvspskif iqwlssesvl kslqekmati ygesqpqyvk
      841 wessmhcavy icalkqwqrg qiirivsdts aevllydsga ektvdirclr klnenmkiie
      901 rlaiecslad irptggstqw tatvceflsy ylsraqvkit iqgsdaarpl svkiycrvet
      961 gqvidisell iekglafrnr tdkanvpcsd skerlkvhle qenarvdgsn sqtsharnsa
     1021 apeenitvsg seqksckmyk sllhsggeem ykpaaipaan ffqavvtcvg tdgtiyvkpk
     1081 sfeialnklm iemqrnfkcf glpepycwkk geaclvkhld nmwhrgkvvk lggtavkvqy
     1141 idsgcierva pcklypttly tdippfcipc qlyktvpign vwkleaiqfl qdllltdrev
     1201 girvqelpdn pwgklsisly fgeislasfm ayhkycvaed fhdvlqlell qgydivwlsy
     1261 vlpplpipgd ifpvkvthlv spnkvyvsld pykhlrklsa teggassdaq wesldealew
     1321 csgnvesipl lthfqtempc laeyhdglwy raklvsveks dpvkilvqfv dygnfsvvsa
     1381 sslrqmpyev lkypveavqv vlagfkpaln drnvkripya pewseealwa midcvegkql
     1441 sacilalspe itvylyddek npvhmklvem gladlde
//
LOCUS       XP_053934088            1441 aa            linear   VRT 09-MAR-2023
DEFINITION  RING finger protein 17 isoform X3 [Cuculus canorus].
ACCESSION   XP_053934088
VERSION     XP_053934088.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078113.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1441
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1441
                     /product="RING finger protein 17 isoform X3"
                     /calculated_mol_wt=162595
     Region          311..468
                     /region_name="TUDOR"
                     /note="Tudor domain; pfam00567"
                     /db_xref="CDD:425754"
     Region          358..430
                     /region_name="Tudor_TDRD4_rpt1"
                     /note="first Tudor domain found in Tudor domain-containing
                     protein 4 (TDRD4) and similar proteins; cd20414"
                     /db_xref="CDD:410485"
     Site            order(367,374,409,412,414)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410485"
     Region          588..683
                     /region_name="Tudor_TDRD4_rpt2"
                     /note="second Tudor domain found in Tudor
                     domain-containing protein 4 (TDRD4) and similar proteins;
                     cd20415"
                     /db_xref="CDD:410486"
     Site            order(622,628,645,648,650)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410486"
     Region          827..908
                     /region_name="Tudor_SF"
                     /note="Tudor domain superfamily; cl02573"
                     /db_xref="CDD:470623"
     Site            order(855,860,862,879,882,884)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410449"
     Region          1064..>1134
                     /region_name="TUDOR"
                     /note="Tudor domain; pfam00567"
                     /db_xref="CDD:425754"
     Region          1295..1399
                     /region_name="Tudor_SF"
                     /note="Tudor domain superfamily; cl02573"
                     /db_xref="CDD:470623"
     Site            order(1308,1312,1314,1333,1336,1338)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410449"
     CDS             1..1441
                     /gene="RNF17"
                     /coded_by="XM_054078113.1:153..4478"
                     /db_xref="GeneID:104055348"
ORIGIN      
        1 msvealdddv gdedsdflgl capedsntte didevlhigv rnlslldngd evlkylelkv
       61 kqegneveen vdrafaelts sllsrkrklc aelmksinty sadiaeakev ieekkkcltg
      121 airlaeelki tpslrthcdl aqvsynlklp vkadlarvys lekrsprlfl ntdeitplik
      181 klgkieweat gheddelyir ldneeemlgc dtessvgnmp lalsreskmk alankldvpk
      241 evkstqvqet lpvichqsip appdspsnrd vvieevfedd leifptddya deqrkkvfkk
      301 etsktgstel vfvshvvnpc hfyvrryfqk kearvletkl enfccnkssy llpsnvlelg
      361 gkifiknret gmwcrgtite liplkskhkk nscpvrhrvc dialleifli dfgssvvlif
      421 sgyvpaerpe tatqtietdd iclfvrkpdq nieaelaaip plavrcslkd lvpknanegw
      481 reeaktkflg mvnntavsmt ifreedgvli vdlrkpplnk isnnmpvslk dalvfldlar
      541 frlqlenhti sqyappkipq egkevsvavc hinsptdfyv qlrerlgsla lskkiqdvyk
      601 yehgkhfeiv cpvegqacva kqedgnwyra qviglpsrqe vmvkyvdfgn vatlavkdir
      661 rvkteflslp ekaircvlay iepykganew nreakerfee mtedklmlcs vvdildntil
      721 svelfdpsav hgrsfsinfq lvkenlasyi pgytesttag pkevwdlple enpetwedkn
      781 tvdvisvrer dlkslsekml qvkisnvvsp skifiqwlss esvlkslqek matiygesqp
      841 qyvkwessmh cavyicalkq wqrgqiiriv sdtsaevlly dsgaektvdi rclrklnenm
      901 kiierlaiec sladirptgg stqwtatvce flsyylsraq vkitiqgsda arplsvkiyc
      961 rvetgqvidi selliekgla frnrtdkanv pcsdskerlk vhleqenarv dgsnsqtsha
     1021 rnsaapeeni tvsgseqksc kmyksllhsg geemykpaai paanffqavv tcvgtdgtiy
     1081 vkpksfeial nklmiemqrn fkcfglpepy cwkkgeaclv khldnmwhrg kvvklggtav
     1141 kignvwklea iqflqdlllt drevgirvqe lpdnpwgkls islyfgeisl asfmayhkyc
     1201 vaedfhdvlq lellqgydiv wlsyvlpplp ipgdifpvkv thlvspnkvy vsldpykhlr
     1261 klsateggas sdaqweslde alewcsgnve sipllthfqt empclaeyhd glwyraklvs
     1321 veksdpvkil vqfvdygnfs vvsasslrqm pyevlkypve avqvvlagfk palndrnvkr
     1381 ipyapewsee alwamidcve gkqlsacila lspeitvyly ddeknpvhmk lvemgladld
     1441 e
//
LOCUS       XP_009564716             335 aa            linear   VRT 09-MAR-2023
DEFINITION  2-acylglycerol O-acyltransferase 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_009564716
VERSION     XP_009564716.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566421.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..335
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..335
                     /product="2-acylglycerol O-acyltransferase 2 isoform X1"
                     /calculated_mol_wt=38465
     Region          42..334
                     /region_name="LPLAT"
                     /note="Lysophospholipid acyltransferases (LPLATs) of
                     glycerophospholipid biosynthesis; cl17185"
                     /db_xref="CDD:473073"
     Site            order(111,114,116,137..140,188..190)
                     /site_type="active"
                     /note="putative acyl-acceptor binding pocket [active]"
                     /db_xref="CDD:153249"
     CDS             1..335
                     /gene="MOGAT2"
                     /coded_by="XM_009566421.2:38..1045"
                     /db_xref="GeneID:104064125"
ORIGIN      
        1 mkvefaplsv plqrrlqtas vvqwvfsflc laqcctavfi alfftrfwlv salyaawwfi
       61 drekpskggr rihairnsvi wrymrdyfpi tlvktaeldp renylmgfhp hgvlaagafl
      121 nfcteasgfs tifpgitphl mmlslwfrip ffrdylmsgg lvssdkqsas yvlrkpeggn
      181 mlaiivggaq ealdarpgsc tlllknrkgf vrlaiqhgtp lvpifsfgen dlfeqvrnpk
      241 gswlrqiqhr lqqimgislp lfhargifqy sfglipyrrp iytvvgkpip vqrkhrpsee
      301 evdqvhqkyl nelsklfeeh kakynipedr hlefi
//
LOCUS       XP_053934110             273 aa            linear   VRT 09-MAR-2023
DEFINITION  2-acylglycerol O-acyltransferase 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053934110
VERSION     XP_053934110.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078135.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..273
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..273
                     /product="2-acylglycerol O-acyltransferase 2 isoform X2"
                     /calculated_mol_wt=30508
     Region          27..272
                     /region_name="LPLAT"
                     /note="Lysophospholipid acyltransferases (LPLATs) of
                     glycerophospholipid biosynthesis; cl17185"
                     /db_xref="CDD:473073"
     Site            order(49,52,54,75..78,126..128)
                     /site_type="active"
                     /note="putative acyl-acceptor binding pocket [active]"
                     /db_xref="CDD:153249"
     CDS             1..273
                     /gene="MOGAT2"
                     /coded_by="XM_054078135.1:91..912"
                     /db_xref="GeneID:104064125"
ORIGIN      
        1 mpsggcgnen pakpggrrvs pvctltpall vktaeldpre nylmgfhphg vlaagaflnf
       61 cteasgfsti fpgitphlmm lslwfripff rdylmsgglv ssdkqsasyv lrkpeggnml
      121 aiivggaqea ldarpgsctl llknrkgfvr laiqhgtplv pifsfgendl feqvrnpkgs
      181 wlrqiqhrlq qimgislplf hargifqysf glipyrrpiy tvvgkpipvq rkhrpseeev
      241 dqvhqkylne lsklfeehka kynipedrhl efi
//
LOCUS       XP_053934119             382 aa            linear   VRT 09-MAR-2023
DEFINITION  traB domain-containing protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053934119
VERSION     XP_053934119.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078144.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..382
                     /product="traB domain-containing protein isoform X1"
                     /calculated_mol_wt=42561
     Region          72..270
                     /region_name="TraB_PrgY-like"
                     /note="TraB/PryY confer plasmid-borne pheromone
                     resistance; cd14726"
                     /db_xref="CDD:350608"
     CDS             1..382
                     /gene="TRABD"
                     /coded_by="XM_054078144.1:134..1282"
                     /db_xref="GeneID:104055277"
ORIGIN      
        1 mqeeqqpeaa adpmsssdap edgpretssv sqnisdadaf killemkmkk rqkkpnlpst
       61 vteldtedgs kvyvvgtahf sdsskkdvvk tiqevqpdvv vvelcqyrvs mlkmdektll
      121 keakeinlek lqqaikqngv msglmqmlll kvsahiteql gmapggefre afkeaskvpf
      181 ckfhlgdrpi pvtfkraiaa lsfwqkvkla wglcflsdpi skddvekckq kdlleqmmae
      241 migefpdlhr tivserdiyl tymlkqaakq ielprasete prkytpavvv gvvgmghvpg
      301 ieknwnsdln iqeimsvppp sasskifkfv ikatifglmg ygcyrigqrt vqfilampaa
      361 qsylqkltei rsshwtpsgv av
//
LOCUS       XP_053934126             382 aa            linear   VRT 09-MAR-2023
DEFINITION  traB domain-containing protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053934126
VERSION     XP_053934126.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078151.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..382
                     /product="traB domain-containing protein isoform X1"
                     /calculated_mol_wt=42561
     Region          72..270
                     /region_name="TraB_PrgY-like"
                     /note="TraB/PryY confer plasmid-borne pheromone
                     resistance; cd14726"
                     /db_xref="CDD:350608"
     CDS             1..382
                     /gene="TRABD"
                     /coded_by="XM_054078151.1:110..1258"
                     /db_xref="GeneID:104055277"
ORIGIN      
        1 mqeeqqpeaa adpmsssdap edgpretssv sqnisdadaf killemkmkk rqkkpnlpst
       61 vteldtedgs kvyvvgtahf sdsskkdvvk tiqevqpdvv vvelcqyrvs mlkmdektll
      121 keakeinlek lqqaikqngv msglmqmlll kvsahiteql gmapggefre afkeaskvpf
      181 ckfhlgdrpi pvtfkraiaa lsfwqkvkla wglcflsdpi skddvekckq kdlleqmmae
      241 migefpdlhr tivserdiyl tymlkqaakq ielprasete prkytpavvv gvvgmghvpg
      301 ieknwnsdln iqeimsvppp sasskifkfv ikatifglmg ygcyrigqrt vqfilampaa
      361 qsylqkltei rsshwtpsgv av
//
LOCUS       XP_053934132             382 aa            linear   VRT 09-MAR-2023
DEFINITION  traB domain-containing protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053934132
VERSION     XP_053934132.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078157.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..382
                     /product="traB domain-containing protein isoform X1"
                     /calculated_mol_wt=42561
     Region          72..270
                     /region_name="TraB_PrgY-like"
                     /note="TraB/PryY confer plasmid-borne pheromone
                     resistance; cd14726"
                     /db_xref="CDD:350608"
     CDS             1..382
                     /gene="TRABD"
                     /coded_by="XM_054078157.1:1874..3022"
                     /db_xref="GeneID:104055277"
ORIGIN      
        1 mqeeqqpeaa adpmsssdap edgpretssv sqnisdadaf killemkmkk rqkkpnlpst
       61 vteldtedgs kvyvvgtahf sdsskkdvvk tiqevqpdvv vvelcqyrvs mlkmdektll
      121 keakeinlek lqqaikqngv msglmqmlll kvsahiteql gmapggefre afkeaskvpf
      181 ckfhlgdrpi pvtfkraiaa lsfwqkvkla wglcflsdpi skddvekckq kdlleqmmae
      241 migefpdlhr tivserdiyl tymlkqaakq ielprasete prkytpavvv gvvgmghvpg
      301 ieknwnsdln iqeimsvppp sasskifkfv ikatifglmg ygcyrigqrt vqfilampaa
      361 qsylqkltei rsshwtpsgv av
//
LOCUS       XP_053934144             382 aa            linear   VRT 09-MAR-2023
DEFINITION  traB domain-containing protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053934144
VERSION     XP_053934144.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078169.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..382
                     /product="traB domain-containing protein isoform X1"
                     /calculated_mol_wt=42561
     Region          72..270
                     /region_name="TraB_PrgY-like"
                     /note="TraB/PryY confer plasmid-borne pheromone
                     resistance; cd14726"
                     /db_xref="CDD:350608"
     CDS             1..382
                     /gene="TRABD"
                     /coded_by="XM_054078169.1:57..1205"
                     /db_xref="GeneID:104055277"
ORIGIN      
        1 mqeeqqpeaa adpmsssdap edgpretssv sqnisdadaf killemkmkk rqkkpnlpst
       61 vteldtedgs kvyvvgtahf sdsskkdvvk tiqevqpdvv vvelcqyrvs mlkmdektll
      121 keakeinlek lqqaikqngv msglmqmlll kvsahiteql gmapggefre afkeaskvpf
      181 ckfhlgdrpi pvtfkraiaa lsfwqkvkla wglcflsdpi skddvekckq kdlleqmmae
      241 migefpdlhr tivserdiyl tymlkqaakq ielprasete prkytpavvv gvvgmghvpg
      301 ieknwnsdln iqeimsvppp sasskifkfv ikatifglmg ygcyrigqrt vqfilampaa
      361 qsylqkltei rsshwtpsgv av
//
LOCUS       XP_053934150             382 aa            linear   VRT 09-MAR-2023
DEFINITION  traB domain-containing protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053934150
VERSION     XP_053934150.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078175.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..382
                     /product="traB domain-containing protein isoform X1"
                     /calculated_mol_wt=42561
     Region          72..270
                     /region_name="TraB_PrgY-like"
                     /note="TraB/PryY confer plasmid-borne pheromone
                     resistance; cd14726"
                     /db_xref="CDD:350608"
     CDS             1..382
                     /gene="TRABD"
                     /coded_by="XM_054078175.1:57..1205"
                     /db_xref="GeneID:104055277"
ORIGIN      
        1 mqeeqqpeaa adpmsssdap edgpretssv sqnisdadaf killemkmkk rqkkpnlpst
       61 vteldtedgs kvyvvgtahf sdsskkdvvk tiqevqpdvv vvelcqyrvs mlkmdektll
      121 keakeinlek lqqaikqngv msglmqmlll kvsahiteql gmapggefre afkeaskvpf
      181 ckfhlgdrpi pvtfkraiaa lsfwqkvkla wglcflsdpi skddvekckq kdlleqmmae
      241 migefpdlhr tivserdiyl tymlkqaakq ielprasete prkytpavvv gvvgmghvpg
      301 ieknwnsdln iqeimsvppp sasskifkfv ikatifglmg ygcyrigqrt vqfilampaa
      361 qsylqkltei rsshwtpsgv av
//
LOCUS       XP_053934160             369 aa            linear   VRT 09-MAR-2023
DEFINITION  traB domain-containing protein isoform X2 [Cuculus canorus].
ACCESSION   XP_053934160
VERSION     XP_053934160.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078185.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..369
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..369
                     /product="traB domain-containing protein isoform X2"
                     /calculated_mol_wt=41135
     Region          59..257
                     /region_name="TraB_PrgY-like"
                     /note="TraB/PryY confer plasmid-borne pheromone
                     resistance; cd14726"
                     /db_xref="CDD:350608"
     CDS             1..369
                     /gene="TRABD"
                     /coded_by="XM_054078185.1:86..1195"
                     /db_xref="GeneID:104055277"
ORIGIN      
        1 msssdapedg pretssvsqn isdadafkil lemkmkkrqk kpnlpstvte ldtedgskvy
       61 vvgtahfsds skkdvvktiq evqpdvvvve lcqyrvsmlk mdektllkea keinleklqq
      121 aikqngvmsg lmqmlllkvs ahiteqlgma pggefreafk easkvpfckf hlgdrpipvt
      181 fkraiaalsf wqkvklawgl cflsdpiskd dvekckqkdl leqmmaemig efpdlhrtiv
      241 serdiyltym lkqaakqiel praseteprk ytpavvvgvv gmghvpgiek nwnsdlniqe
      301 imsvpppsas skifkfvika tifglmgygc yrigqrtvqf ilampaaqsy lqklteirss
      361 hwtpsgvav
//
LOCUS       XP_053934169             369 aa            linear   VRT 09-MAR-2023
DEFINITION  traB domain-containing protein isoform X2 [Cuculus canorus].
ACCESSION   XP_053934169
VERSION     XP_053934169.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078194.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..369
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..369
                     /product="traB domain-containing protein isoform X2"
                     /calculated_mol_wt=41135
     Region          59..257
                     /region_name="TraB_PrgY-like"
                     /note="TraB/PryY confer plasmid-borne pheromone
                     resistance; cd14726"
                     /db_xref="CDD:350608"
     CDS             1..369
                     /gene="TRABD"
                     /coded_by="XM_054078194.1:36..1145"
                     /db_xref="GeneID:104055277"
ORIGIN      
        1 msssdapedg pretssvsqn isdadafkil lemkmkkrqk kpnlpstvte ldtedgskvy
       61 vvgtahfsds skkdvvktiq evqpdvvvve lcqyrvsmlk mdektllkea keinleklqq
      121 aikqngvmsg lmqmlllkvs ahiteqlgma pggefreafk easkvpfckf hlgdrpipvt
      181 fkraiaalsf wqkvklawgl cflsdpiskd dvekckqkdl leqmmaemig efpdlhrtiv
      241 serdiyltym lkqaakqiel praseteprk ytpavvvgvv gmghvpgiek nwnsdlniqe
      301 imsvpppsas skifkfvika tifglmgygc yrigqrtvqf ilampaaqsy lqklteirss
      361 hwtpsgvav
//
LOCUS       XP_053934179             337 aa            linear   VRT 09-MAR-2023
DEFINITION  traB domain-containing protein isoform X3 [Cuculus canorus].
ACCESSION   XP_053934179
VERSION     XP_053934179.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078204.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..337
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..337
                     /product="traB domain-containing protein isoform X3"
                     /calculated_mol_wt=37755
     Region          27..225
                     /region_name="TraB_PrgY-like"
                     /note="TraB/PryY confer plasmid-borne pheromone
                     resistance; cd14726"
                     /db_xref="CDD:350608"
     CDS             1..337
                     /gene="TRABD"
                     /coded_by="XM_054078204.1:249..1262"
                     /db_xref="GeneID:104055277"
ORIGIN      
        1 mkmkkrqkkp nlpstvteld tedgskvyvv gtahfsdssk kdvvktiqev qpdvvvvelc
       61 qyrvsmlkmd ektllkeake inleklqqai kqngvmsglm qmlllkvsah iteqlgmapg
      121 gefreafkea skvpfckfhl gdrpipvtfk raiaalsfwq kvklawglcf lsdpiskddv
      181 ekckqkdlle qmmaemigef pdlhrtivse rdiyltymlk qaakqielpr aseteprkyt
      241 pavvvgvvgm ghvpgieknw nsdlniqeim svpppsassk ifkfvikati fglmgygcyr
      301 igqrtvqfil ampaaqsylq klteirsshw tpsgvav
//
LOCUS       XP_053934189             828 aa            linear   VRT 09-MAR-2023
DEFINITION  cilium assembly protein DZIP1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053934189
VERSION     XP_053934189.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078214.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..828
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..828
                     /product="cilium assembly protein DZIP1 isoform X1"
                     /calculated_mol_wt=94883
     Region          29..149
                     /region_name="Dzip-like_N"
                     /note="Iguana/Dzip1-like DAZ-interacting protein
                     N-terminal; pfam13815"
                     /db_xref="CDD:433498"
     Region          <100..>399
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..828
                     /gene="DZIP1"
                     /coded_by="XM_054078214.1:453..2939"
                     /db_xref="GeneID:104057290"
ORIGIN      
        1 mpfserayfp avsaggaapg avpspfpafq frgrhespdw rrlsvvdvgr vsqegdvatl
       61 qehlehvtfc saerercpnc kgpadplllk llrlaqlcte yllhsqeyls sqlgsleeal
      121 qtsqaqrdql ekevahylqe ikalkeecrr rkkmistqqm mlearasyhq cqfcekafmn
      181 ytflqshiqr rhqeesqieq krkaktdklq deidklkeql qltksqleae qqanmirisk
      241 eceqqkskee eilqslhkwk eeekeklade iekvkemfmk elkefssrns tlenqllelq
      301 ktnmqqksnl gmlkdsqeft eeklqspqdy qnvvkllenq eskwaskiqa lhydhktekn
      361 mlllqikklk sslredlnkn ntfyktriee lgqrlqeqnn liisqkkqik elstrsvasi
      421 kpydvhttve hleeskpslp vmheqaplvh mlepieelse eekeiekadh ktgrsnhhlr
      481 spvksdpssa kelreffeqk mferlesfgi kadvrgisne tlraiesdrr crqkrepdiq
      541 qirerlehqv svkveeksss cnrlvscpql pfedklkftq lgisssatpr kpvkwsstav
      601 rpaeqrtaia entstpkykk ifgnevsrkt ssittppfss eeetdeddik qsyippelpq
      661 kqskpsstev tafqkvsgks smdgmkenei eetgtpakts kgtviqtlte qvgkslsnpg
      721 nkkpagginv aqafikkeev qelkfterde ddwdissiee dvllmkdeka qkpstiqkde
      781 snaaslvhaw alpkrstpke eglheadnts tlksslvtvs dwsdssdi
//
LOCUS       XP_053934199             808 aa            linear   VRT 09-MAR-2023
DEFINITION  cilium assembly protein DZIP1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053934199
VERSION     XP_053934199.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078224.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..808
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..808
                     /product="cilium assembly protein DZIP1 isoform X2"
                     /calculated_mol_wt=92551
     Region          29..149
                     /region_name="Dzip-like_N"
                     /note="Iguana/Dzip1-like DAZ-interacting protein
                     N-terminal; pfam13815"
                     /db_xref="CDD:433498"
     Region          <100..>399
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..808
                     /gene="DZIP1"
                     /coded_by="XM_054078224.1:453..2879"
                     /db_xref="GeneID:104057290"
ORIGIN      
        1 mpfserayfp avsaggaapg avpspfpafq frgrhespdw rrlsvvdvgr vsqegdvatl
       61 qehlehvtfc saerercpnc kgpadplllk llrlaqlcte yllhsqeyls sqlgsleeal
      121 qtsqaqrdql ekevahylqe ikalkeecrr rkkmistqqm mlearasyhq cqfcekafmn
      181 ytflqshiqr rhqeesqieq krkaktdklq deidklkeql qltksqleae qqanmirisk
      241 eceqqkskee eilqslhkwk eeekeklade iekvkemfmk elkefssrns tlenqllelq
      301 ktnmqqksnl gmlkdsqeft eeklqspqdy qnvvkllenq eskwaskiqa lhydhktekn
      361 mlllqikklk sslredlnkn ntfyktriee lgqrlqeqnn liisqkkqik elstrsvasi
      421 kpydvhttve hleeskpslp vmheiekadh ktgrsnhhlr spvksdpssa kelreffeqk
      481 mferlesfgi kadvrgisne tlraiesdrr crqkrepdiq qirerlehqv svkveeksss
      541 cnrlvscpql pfedklkftq lgisssatpr kpvkwsstav rpaeqrtaia entstpkykk
      601 ifgnevsrkt ssittppfss eeetdeddik qsyippelpq kqskpsstev tafqkvsgks
      661 smdgmkenei eetgtpakts kgtviqtlte qvgkslsnpg nkkpagginv aqafikkeev
      721 qelkfterde ddwdissiee dvllmkdeka qkpstiqkde snaaslvhaw alpkrstpke
      781 eglheadnts tlksslvtvs dwsdssdi
//
LOCUS       XP_053934210             807 aa            linear   VRT 09-MAR-2023
DEFINITION  cilium assembly protein DZIP1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053934210
VERSION     XP_053934210.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078235.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..807
                     /product="cilium assembly protein DZIP1 isoform X3"
                     /calculated_mol_wt=92356
     Region          29..149
                     /region_name="Dzip-like_N"
                     /note="Iguana/Dzip1-like DAZ-interacting protein
                     N-terminal; pfam13815"
                     /db_xref="CDD:433498"
     Region          109..>378
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..807
                     /gene="DZIP1"
                     /coded_by="XM_054078235.1:453..2876"
                     /db_xref="GeneID:104057290"
ORIGIN      
        1 mpfserayfp avsaggaapg avpspfpafq frgrhespdw rrlsvvdvgr vsqegdvatl
       61 qehlehvtfc saerercpnc kgpadplllk llrlaqlcte yllhsqeyls sqlgsleeal
      121 qtsqaqrdql ekevahylqe ikalkeecrr rkkmistqqm mlearasyhq cqfcekafmn
      181 ytflqshiqr rhqeesqieq krkaktdklq deidklkeql qltksqleae qqanmirisk
      241 eceqqkskee eilqslhkwk eeekeklade iekvkemfmk elkefssrns tlenqllelq
      301 ktnmqqksnl gmlkdsqeft eeklqspqdy qnvvkllenq lllqikklks slredlnknn
      361 tfyktrieel gqrlqeqnnl iisqkkqike lstrsvasik pydvhttveh leeskpslpv
      421 mheqaplvhm lepieelsee ekeiekadhk tgrsnhhlrs pvksdpssak elreffeqkm
      481 ferlesfgik advrgisnet lraiesdrrc rqkrepdiqq irerlehqvs vkveeksssc
      541 nrlvscpqlp fedklkftql gisssatprk pvkwsstavr paeqrtaiae ntstpkykki
      601 fgnevsrkts sittppfsse eetdeddikq syippelpqk qskpsstevt afqkvsgkss
      661 mdgmkeneie etgtpaktsk gtviqtlteq vgkslsnpgn kkpagginva qafikkeevq
      721 elkfterded dwdissieed vllmkdekaq kpstiqkdes naaslvhawa lpkrstpkee
      781 glheadntst lksslvtvsd wsdssdi
//
LOCUS       XP_009558225             343 aa            linear   VRT 09-MAR-2023
DEFINITION  lumican [Cuculus canorus].
ACCESSION   XP_009558225
VERSION     XP_009558225.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009559930.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..343
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..343
                     /product="lumican"
                     /calculated_mol_wt=38449
     Region          40..69
                     /region_name="LRRNT"
                     /note="Leucine rich repeat N-terminal domain; pfam01462"
                     /db_xref="CDD:396168"
     Region          71..94
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          86..>328
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          95..120
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          121..141
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          142..165
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          166..190
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          191..211
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          212..235
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          236..260
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          281..310
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     CDS             1..343
                     /gene="LUM"
                     /coded_by="XM_009559930.2:424..1455"
                     /db_xref="GeneID:104058421"
ORIGIN      
        1 mtlnslpifl llisgifchy dygpaddygy dpfgpsaavc apecncplsy ptamycdnlk
       61 lktipivpsg ikylylrnnm iegieentfd nvtdlqwlil dhnhlenski kgrvfsklkn
      121 lkklhinynn lteavgplpk tlddlqlshn kitkvnpgvl eglvnltvih lqnnqlkaes
      181 vsgafkglns llyldlsfnq ltklptglph sllmlyfdnn qisnvpdeyf qgfkalqylr
      241 lshnkltdsg ipgnvfnits lveldlsfnq lksiptvsen lenfylqvnk iskfplssfc
      301 kvvgpmtysk ithlrldgnn ltradlpqem ynclrvaaei sle
//
LOCUS       XP_053934229            1262 aa            linear   VRT 09-MAR-2023
DEFINITION  trafficking protein particle complex subunit 10 [Cuculus canorus].
ACCESSION   XP_053934229
VERSION     XP_053934229.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078254.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1262
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1262
                     /product="trafficking protein particle complex subunit 10"
                     /calculated_mol_wt=142866
     Region          <462..545
                     /region_name="Foie-gras_1"
                     /note="Foie gras liver health family 1; pfam11817"
                     /db_xref="CDD:463359"
     Region          1073..1249
                     /region_name="TRAPPC10"
                     /note="Trafficking protein particle complex subunit 10,
                     TRAPPC10; pfam12584"
                     /db_xref="CDD:403698"
     CDS             1..1262
                     /gene="TRAPPC10"
                     /coded_by="XM_054078254.1:110..3898"
                     /db_xref="GeneID:104059278"
ORIGIN      
        1 mdpaeeegre kppvvytmen kpivtcagdq nlfsslyptl sqqlprepme wrrsygrapk
       61 mihlessfvq fkeellpkeg nkalltfpfl hiywteccdt evykttvkdd itkwqnvlra
      121 hnsvdwlivv vesdakkknk tnilprtsiv dkirndfcnk qsdrcvvlsd plkdssrsqe
      181 swnafltklr tlllmsftkn lgkfeddmrt lrekrtepgw sfceyfmvqe elafvfemlq
      241 qfedalvqyd eldalfsqyv vnfgagdgan wltffcqpvr swnglilrkp idmekreliq
      301 nqeatlldlr sylfsrqctl liflqrpwev sqralellhn cvqelkllev svppgaldcw
      361 vflsclevlq riegccdraq idanvshtvg lwsyateklk slgylcglvs ekgpnsedln
      421 rtvdllaglg aerpetanal qspykklkea lssveafekh yldlshatie mytnigrirs
      481 anlvgkdlae fymrkkgpqk aevylqgalk tylaegwall vthtrkqlae cqkhlgqien
      541 ylqtssllag dihltederk rfcqeildfa nqqaenqgqk vilpmhsfaq lktlhfdppn
      601 avvhvggkls ieltllsqmp ipvqvdqvai hvhfsiekns yrktaewltk hktsngvinf
      661 pnevsgfpls rnnlpalely emyerspsdn slntagiick nvhmllrrqe sssslditsg
      721 vtledgahvl kcnniilepg vnkltfntqa kepgtytlrq lctsvgkvqf vllhiypivq
      781 ydvysqepql kvepmtdsll agipqkvkft vttghytmkn gdtlqlsnad ampilyhles
      841 kaviysntre kisesslriq ssekitsisl pvapayhvie felevmylps atesaaeket
      901 ttnkevhskn kekqkqdncm atvdqkvtid cpwsiystii altfcipfna khsllsagkr
      961 kyvqvcvqnl sdlcfqlsdn slknsadssd lqlvplnpes qqviysnqsi ffvwelkwtk
     1021 elplslqclf svsfcpatse eqsftlkpft yefqvenfft lyhvkteifp plgaeycktg
     1081 slcslevsit rlvdlsevdr dealtesegy cttklmyevv dnssnwavcg kssgmismpv
     1141 aaqathkvhm evmplfagyl pfpdvklfky lphhsahsmq ldadswiend nlsvdknvdd
     1201 qtdsssirsr gslhsaasge hkglpmprlq sfssgqvfnc stgmqvlvip skddhvlevn
     1261 im
//
LOCUS       XP_053934238             536 aa            linear   VRT 09-MAR-2023
DEFINITION  1-acylglycerol-3-phosphate O-acyltransferase Pnpla3 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053934238
VERSION     XP_053934238.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078263.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..536
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..536
                     /product="1-acylglycerol-3-phosphate O-acyltransferase
                     Pnpla3 isoform X1"
                     /calculated_mol_wt=59239
     Region          5..284
                     /region_name="Pat_PNPLA2"
                     /note="Patatin-like phospholipase domain containing
                     protein 2; cd07220"
                     /db_xref="CDD:132859"
     Site            order(16..17,19,48,198)
                     /site_type="active"
                     /db_xref="CDD:132859"
     Site            46..50
                     /site_type="other"
                     /note="nucleophile elbow"
                     /db_xref="CDD:132859"
     CDS             1..536
                     /gene="LOC104067327"
                     /coded_by="XM_054078263.1:91..1701"
                     /db_xref="GeneID:104067327"
ORIGIN      
        1 mmldrergws vsfagcgflg vyhigaatcl qeraphiird arhiygasag alagavlvag
       61 gslgqrrsag rdagpgaprl aapggcgagl lfpaaqacad vlalakeark rnlgplhpsf
      121 nvikiirdgl mrnlpenahq lssgrlcisl trvsdgknal isnfnskeev vqalicssfv
      181 piycglipps frgvryvdgg isdnlphyes kntitvspfa gecdicpkgk sanfhemnvt
      241 ntsiqlslgn lyrltqalfp pepkvlgeic eqgysdalkf lkengilkds iyihlsftkr
      301 npheaaehid hmkkktlten nkvetlkiev lndqlkenpw pleksifesl pprlrkalqe
      361 ackeqngfya qfsklfpirv lsylmlpytl pvesaysval rlvnwfpdmp advrwmqeql
      421 criagavcsq aksklfctsr kdnyaslrkc qtvpstmefh ssychlkmph ssvdletwlw
      481 esscfmqsai etaptnmqdh sdlnsypvfl tncheselei dfdssseesf htapey
//
LOCUS       XP_053934243             505 aa            linear   VRT 09-MAR-2023
DEFINITION  1-acylglycerol-3-phosphate O-acyltransferase Pnpla3 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053934243
VERSION     XP_053934243.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078268.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..505
                     /product="1-acylglycerol-3-phosphate O-acyltransferase
                     Pnpla3 isoform X2"
                     /calculated_mol_wt=56352
     Region          5..253
                     /region_name="Pat_PNPLA2"
                     /note="Patatin-like phospholipase domain containing
                     protein 2; cd07220"
                     /db_xref="CDD:132859"
     Site            order(16..17,19,48,167)
                     /site_type="active"
                     /db_xref="CDD:132859"
     Site            46..50
                     /site_type="other"
                     /note="nucleophile elbow"
                     /db_xref="CDD:132859"
     CDS             1..505
                     /gene="LOC104067327"
                     /coded_by="XM_054078268.1:88..1605"
                     /db_xref="GeneID:104067327"
ORIGIN      
        1 mmldrergws vsfagcgflg vyhigaatcl qeraphiird arhiygasag alagavlvag
       61 gslaqacadv lalakearkr nlgplhpsfn vikiirdglm rnlpenahql ssgrlcislt
      121 rvsdgknali snfnskeevv qalicssfvp iycglippsf rgvryvdggi sdnlphyesk
      181 ntitvspfag ecdicpkgks anfhemnvtn tsiqlslgnl yrltqalfpp epkvlgeice
      241 qgysdalkfl kengilkdsi yihlsftkrn pheaaehidh mkkktltenn kvetlkievl
      301 ndqlkenpwp leksifeslp prlrkalqea ckeqngfyaq fsklfpirvl sylmlpytlp
      361 vesaysvalr lvnwfpdmpa dvrwmqeqlc riagavcsqa ksklfctsrk dnyaslrkcq
      421 tvpstmefhs sychlkmphs svdletwlwe sscfmqsaie taptnmqdhs dlnsypvflt
      481 ncheseleid fdssseesfh tapey
//
LOCUS       XP_053934251             474 aa            linear   VRT 09-MAR-2023
DEFINITION  1-acylglycerol-3-phosphate O-acyltransferase Pnpla3 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053934251
VERSION     XP_053934251.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078276.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..474
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..474
                     /product="1-acylglycerol-3-phosphate O-acyltransferase
                     Pnpla3 isoform X3"
                     /calculated_mol_wt=52117
     Region          5..284
                     /region_name="Patatin_and_cPLA2"
                     /note="Patatins and Phospholipases; cl11396"
                     /db_xref="CDD:416256"
     Site            order(16..17,19,48,198)
                     /site_type="active"
                     /db_xref="CDD:132836"
     Site            46..50
                     /site_type="other"
                     /note="nucleophile elbow"
                     /db_xref="CDD:132836"
     CDS             1..474
                     /gene="LOC104067327"
                     /coded_by="XM_054078276.1:97..1521"
                     /db_xref="GeneID:104067327"
ORIGIN      
        1 mmldrergws vsfagcgflg vyhigaatcl qeraphiird arhiygasag alagavlvag
       61 gslgqrrsag rdagpgaprl aapggcgagl lfpaaqacad vlalakeark rnlgplhpsf
      121 nvikiirdgl mrnlpenahq lssgrlcisl trvsdgknal isnfnskeev vqalicssfv
      181 piycglipps frgvryvdgg isdnlphyes kntitvspfa gecdicpkgk sanfhemnvt
      241 ntsiqlslgn lyrltqalfp pepkvlgeic eqgysdalkf lkengilkds iyihlsftkr
      301 npheaaehid hmkkktlten nkvetlkiev lndqlkenpw pleksifesl pprlrkalqe
      361 ackeqngfya qfsklfpirv lsylmlpytl pvesaysval rlvnwfpdmp advrwmqeql
      421 criagavcsq aksklfctsr ssfcfgiklk shenlrclhf enpfrklnlv dgic
//
LOCUS       XP_053934255             449 aa            linear   VRT 09-MAR-2023
DEFINITION  patatin-like phospholipase domain-containing protein 2 isoform X4
            [Cuculus canorus].
ACCESSION   XP_053934255
VERSION     XP_053934255.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078280.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..449
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..449
                     /product="patatin-like phospholipase domain-containing
                     protein 2 isoform X4"
                     /calculated_mol_wt=49124
     Region          5..284
                     /region_name="Pat_PNPLA2"
                     /note="Patatin-like phospholipase domain containing
                     protein 2; cd07220"
                     /db_xref="CDD:132859"
     Site            order(16..17,19,48,198)
                     /site_type="active"
                     /db_xref="CDD:132859"
     Site            46..50
                     /site_type="other"
                     /note="nucleophile elbow"
                     /db_xref="CDD:132859"
     CDS             1..449
                     /gene="LOC104067327"
                     /coded_by="XM_054078280.1:96..1445"
                     /db_xref="GeneID:104067327"
ORIGIN      
        1 mmldrergws vsfagcgflg vyhigaatcl qeraphiird arhiygasag alagavlvag
       61 gslgqrrsag rdagpgaprl aapggcgagl lfpaaqacad vlalakeark rnlgplhpsf
      121 nvikiirdgl mrnlpenahq lssgrlcisl trvsdgknal isnfnskeev vqalicssfv
      181 piycglipps frgvryvdgg isdnlphyes kntitvspfa gecdicpkgk sanfhemnvt
      241 ntsiqlslgn lyrltqalfp pepkvlgeic eqgysdalkf lkengilkds iyihlsftkr
      301 npheaaehid hmkkktlten nkvetlkiev lndqlkenpw pleksifesl pprlrkalqe
      361 ackeqngfya qfsklfpirv lsylmlpytl pvesaysval rlvnwfpdmp advrwmqeql
      421 criagavcsq aksklfctsr klnlvdgic
//
LOCUS       XP_053934256             314 aa            linear   VRT 09-MAR-2023
DEFINITION  lambda-crystallin homolog [Cuculus canorus].
ACCESSION   XP_053934256
VERSION     XP_053934256.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078281.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..314
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..314
                     /product="lambda-crystallin homolog"
                     /calculated_mol_wt=34625
     Region          1..309
                     /region_name="PRK06129"
                     /note="3-hydroxyacyl-CoA dehydrogenase; Validated"
                     /db_xref="CDD:235706"
     CDS             1..314
                     /gene="CRYL1"
                     /coded_by="XM_054078281.1:78..1022"
                     /db_xref="GeneID:104055323"
ORIGIN      
        1 mesvaiigsg ligrswamvf aaggfkvkly diaqqqltsa lenirkqmqe leesgflkgs
       61 lsaeqqlali stctdlkaav egatfiqect peklelkkkv fsqldlivgd nvilssstsc
      121 llpsklftgl khvkqcivsh pvnppyfvpl veivphpetd pfttertyal mkkigqspvk
      181 lngeiegfvl nrlqyavise awrlvgegvi sptdldlvms dglgmryafi gpletmhlna
      241 egftnycery rqgmrlvlnt fgpvpefsge veqkisqams ekipvvpkal dsrrkwrdec
      301 laglaklkkq lksd
//
LOCUS       XP_053934259             919 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA ligase 4 isoform X1 [Cuculus canorus].
ACCESSION   XP_053934259
VERSION     XP_053934259.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078284.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..919
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..919
                     /product="DNA ligase 4 isoform X1"
                     /calculated_mol_wt=104941
     Region          93..614
                     /region_name="dnl1"
                     /note="DNA ligase I, ATP-dependent (dnl1); TIGR00574"
                     /db_xref="CDD:273147"
     Region          670..757
                     /region_name="BRCT_DNA_ligase_IV_rpt1"
                     /note="first BRCT domain of DNA ligase 4 (LIG4) and
                     similar proteins; cd17722"
                     /db_xref="CDD:349354"
     Region          762..795
                     /region_name="DNA_ligase_IV"
                     /note="DNA ligase IV; pfam11411"
                     /db_xref="CDD:463272"
     Region          821..908
                     /region_name="BRCT_DNA_ligase_IV_rpt2"
                     /note="second BRCT domain of DNA ligase 4 (LIG4) and
                     similar proteins; cd17717"
                     /db_xref="CDD:349349"
     Site            order(822,843..845,847..848,851..852,854..855,903,
                     906..907)
                     /site_type="other"
                     /note="XRCC4 interaction site [polypeptide binding]"
                     /db_xref="CDD:349349"
     CDS             1..919
                     /gene="LIG4"
                     /coded_by="XM_054078284.1:336..3095"
                     /db_xref="GeneID:104062976"
ORIGIN      
        1 mrsenqslma stpasqsskk tvasrvpfad lcstleriqt cksrpekiky fkefldswrk
       61 fhdalhqkek dvtdsfypam rlilpqlere rmaygiketm laklyielln lpkdgkdask
      121 llnyrtpagt rgdagdfamv ayfvlkprsp kqgrltieqv nehldviann naaknkgllk
      181 ksllqlitqs taleqkwlir miikdlklgv sertifsvfh pdaaelhnvt tdlekvcrql
      241 hdpsvslsdv simlfsafkp mlaaiadvkq iekqmnnqvf yietkldger mqmhkdgdvy
      301 kyfsrngfdy tqqfgaspld gsltpfihnv fksniqncil dgemmaynpe tqtfmqkgnk
      361 fdikrmveds dlqtcfcvfd vlmvnnqklg qetlskryei lssvfspvtg rlhvvpkkna
      421 rmrkevidal neaidnreeg imvkdpmsty kpdkrgegwl kikpeyvngl mdeldllivg
      481 gywgkgsrgg mmshflcava ekpcpnekpt vfhsicrvgs gytmkelydl glklskhwkp
      541 ydrkdppsni lcgtekpemy iepcnsvivq vkaaeivnsd myktdctlrf priekiredk
      601 ewyecmtldi ledlrskaeg klaskhlhid eydepqekkr ktvskvkkvi giaeqfkapd
      661 lsnvskvsni fedvefcvmt gmgkysksel esriaeyggs vvqnpgpety cvivgaenvr
      721 vkniiasnky dvvraewllq cfqtkmlvpw qpafmihmsp dtkehfarey dcygdsytae
      781 tdvaqlkevf srmkdnkvmp ldviavleer yswnscplsi frgntvyvdc yaivndprtk
      841 ihgtilsira lelrfygakv vlcleegvsh vvigedhsrv kemkalrrtf gkkfkivsel
      901 wvtvsveegv lknenqyli
//
LOCUS       XP_053934266             911 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA ligase 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053934266
VERSION     XP_053934266.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078291.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..911
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..911
                     /product="DNA ligase 4 isoform X2"
                     /calculated_mol_wt=103995
     Region          85..606
                     /region_name="dnl1"
                     /note="DNA ligase I, ATP-dependent (dnl1); TIGR00574"
                     /db_xref="CDD:273147"
     Region          662..749
                     /region_name="BRCT_DNA_ligase_IV_rpt1"
                     /note="first BRCT domain of DNA ligase 4 (LIG4) and
                     similar proteins; cd17722"
                     /db_xref="CDD:349354"
     Region          754..787
                     /region_name="DNA_ligase_IV"
                     /note="DNA ligase IV; pfam11411"
                     /db_xref="CDD:463272"
     Region          813..900
                     /region_name="BRCT_DNA_ligase_IV_rpt2"
                     /note="second BRCT domain of DNA ligase 4 (LIG4) and
                     similar proteins; cd17717"
                     /db_xref="CDD:349349"
     Site            order(814,835..837,839..840,843..844,846..847,895,
                     898..899)
                     /site_type="other"
                     /note="XRCC4 interaction site [polypeptide binding]"
                     /db_xref="CDD:349349"
     CDS             1..911
                     /gene="LIG4"
                     /coded_by="XM_054078291.1:136..2871"
                     /db_xref="GeneID:104062976"
ORIGIN      
        1 mastpasqss kktvasrvpf adlcstleri qtcksrpeki kyfkefldsw rkfhdalhqk
       61 ekdvtdsfyp amrlilpqle rermaygike tmlaklyiel lnlpkdgkda skllnyrtpa
      121 gtrgdagdfa mvayfvlkpr spkqgrltie qvnehldvia nnnaaknkgl lkksllqlit
      181 qstaleqkwl irmiikdlkl gvsertifsv fhpdaaelhn vttdlekvcr qlhdpsvsls
      241 dvsimlfsaf kpmlaaiadv kqiekqmnnq vfyietkldg ermqmhkdgd vykyfsrngf
      301 dytqqfgasp ldgsltpfih nvfksniqnc ildgemmayn petqtfmqkg nkfdikrmve
      361 dsdlqtcfcv fdvlmvnnqk lgqetlskry eilssvfspv tgrlhvvpkk narmrkevid
      421 alneaidnre egimvkdpms tykpdkrgeg wlkikpeyvn glmdeldlli vggywgkgsr
      481 ggmmshflca vaekpcpnek ptvfhsicrv gsgytmkely dlglklskhw kpydrkdpps
      541 nilcgtekpe myiepcnsvi vqvkaaeivn sdmyktdctl rfpriekire dkewyecmtl
      601 diledlrska egklaskhlh ideydepqek krktvskvkk vigiaeqfka pdlsnvskvs
      661 nifedvefcv mtgmgkysks elesriaeyg gsvvqnpgpe tycvivgaen vrvkniiasn
      721 kydvvraewl lqcfqtkmlv pwqpafmihm spdtkehfar eydcygdsyt aetdvaqlke
      781 vfsrmkdnkv mpldviavle eryswnscpl sifrgntvyv dcyaivndpr tkihgtilsi
      841 ralelrfyga kvvlcleegv shvvigedhs rvkemkalrr tfgkkfkivs elwvtvsvee
      901 gvlknenqyl i
//
LOCUS       XP_053934273             911 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA ligase 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053934273
VERSION     XP_053934273.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078298.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..911
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..911
                     /product="DNA ligase 4 isoform X2"
                     /calculated_mol_wt=103995
     Region          85..606
                     /region_name="dnl1"
                     /note="DNA ligase I, ATP-dependent (dnl1); TIGR00574"
                     /db_xref="CDD:273147"
     Region          662..749
                     /region_name="BRCT_DNA_ligase_IV_rpt1"
                     /note="first BRCT domain of DNA ligase 4 (LIG4) and
                     similar proteins; cd17722"
                     /db_xref="CDD:349354"
     Region          754..787
                     /region_name="DNA_ligase_IV"
                     /note="DNA ligase IV; pfam11411"
                     /db_xref="CDD:463272"
     Region          813..900
                     /region_name="BRCT_DNA_ligase_IV_rpt2"
                     /note="second BRCT domain of DNA ligase 4 (LIG4) and
                     similar proteins; cd17717"
                     /db_xref="CDD:349349"
     Site            order(814,835..837,839..840,843..844,846..847,895,
                     898..899)
                     /site_type="other"
                     /note="XRCC4 interaction site [polypeptide binding]"
                     /db_xref="CDD:349349"
     CDS             1..911
                     /gene="LIG4"
                     /coded_by="XM_054078298.1:356..3091"
                     /db_xref="GeneID:104062976"
ORIGIN      
        1 mastpasqss kktvasrvpf adlcstleri qtcksrpeki kyfkefldsw rkfhdalhqk
       61 ekdvtdsfyp amrlilpqle rermaygike tmlaklyiel lnlpkdgkda skllnyrtpa
      121 gtrgdagdfa mvayfvlkpr spkqgrltie qvnehldvia nnnaaknkgl lkksllqlit
      181 qstaleqkwl irmiikdlkl gvsertifsv fhpdaaelhn vttdlekvcr qlhdpsvsls
      241 dvsimlfsaf kpmlaaiadv kqiekqmnnq vfyietkldg ermqmhkdgd vykyfsrngf
      301 dytqqfgasp ldgsltpfih nvfksniqnc ildgemmayn petqtfmqkg nkfdikrmve
      361 dsdlqtcfcv fdvlmvnnqk lgqetlskry eilssvfspv tgrlhvvpkk narmrkevid
      421 alneaidnre egimvkdpms tykpdkrgeg wlkikpeyvn glmdeldlli vggywgkgsr
      481 ggmmshflca vaekpcpnek ptvfhsicrv gsgytmkely dlglklskhw kpydrkdpps
      541 nilcgtekpe myiepcnsvi vqvkaaeivn sdmyktdctl rfpriekire dkewyecmtl
      601 diledlrska egklaskhlh ideydepqek krktvskvkk vigiaeqfka pdlsnvskvs
      661 nifedvefcv mtgmgkysks elesriaeyg gsvvqnpgpe tycvivgaen vrvkniiasn
      721 kydvvraewl lqcfqtkmlv pwqpafmihm spdtkehfar eydcygdsyt aetdvaqlke
      781 vfsrmkdnkv mpldviavle eryswnscpl sifrgntvyv dcyaivndpr tkihgtilsi
      841 ralelrfyga kvvlcleegv shvvigedhs rvkemkalrr tfgkkfkivs elwvtvsvee
      901 gvlknenqyl i
//
LOCUS       XP_053934286             337 aa            linear   VRT 09-MAR-2023
DEFINITION  protein ABHD13 [Cuculus canorus].
ACCESSION   XP_053934286
VERSION     XP_053934286.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078311.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..337
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..337
                     /product="protein ABHD13"
                     /calculated_mol_wt=38262
     Region          76..317
                     /region_name="FrsA"
                     /note="Fermentation-respiration switch esterase FrsA,
                     DUF1100 family [Signal transduction mechanisms]; COG1073"
                     /db_xref="CDD:440691"
     CDS             1..337
                     /gene="ABHD13"
                     /coded_by="XM_054078311.1:194..1207"
                     /db_xref="GeneID:104062977"
ORIGIN      
        1 mekswmlwnf vkrwllalas wswslcricl lplivtfhly ggiillilif vsiagilykf
       61 qdvllyfpeq psssrlyvpm ptgiphenif iktkdgvlln lillrytgdn aaysptiiyf
      121 hgnagnighr lpnallmlvn lkvnlilvdy rgygksegea seeglyldse avldyvmtrs
      181 dldktkiflf grslggavai hlasenshri saivventfl sipymastlf sffpmrylpl
      241 wcyknkflsy rkisqcrmps lfisglsdql ippvmmkqly elspartkrl aifpdgthnd
      301 twqcqgyfta leqfikevik shspeemakt sssvtii
//
LOCUS       XP_053934296             337 aa            linear   VRT 09-MAR-2023
DEFINITION  protein ABHD13 [Cuculus canorus].
ACCESSION   XP_053934296
VERSION     XP_053934296.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078321.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..337
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..337
                     /product="protein ABHD13"
                     /calculated_mol_wt=38262
     Region          76..317
                     /region_name="FrsA"
                     /note="Fermentation-respiration switch esterase FrsA,
                     DUF1100 family [Signal transduction mechanisms]; COG1073"
                     /db_xref="CDD:440691"
     CDS             1..337
                     /gene="ABHD13"
                     /coded_by="XM_054078321.1:175..1188"
                     /db_xref="GeneID:104062977"
ORIGIN      
        1 mekswmlwnf vkrwllalas wswslcricl lplivtfhly ggiillilif vsiagilykf
       61 qdvllyfpeq psssrlyvpm ptgiphenif iktkdgvlln lillrytgdn aaysptiiyf
      121 hgnagnighr lpnallmlvn lkvnlilvdy rgygksegea seeglyldse avldyvmtrs
      181 dldktkiflf grslggavai hlasenshri saivventfl sipymastlf sffpmrylpl
      241 wcyknkflsy rkisqcrmps lfisglsdql ippvmmkqly elspartkrl aifpdgthnd
      301 twqcqgyfta leqfikevik shspeemakt sssvtii
//
LOCUS       XP_053934306             337 aa            linear   VRT 09-MAR-2023
DEFINITION  protein ABHD13 [Cuculus canorus].
ACCESSION   XP_053934306
VERSION     XP_053934306.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078331.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..337
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..337
                     /product="protein ABHD13"
                     /calculated_mol_wt=38262
     Region          76..317
                     /region_name="FrsA"
                     /note="Fermentation-respiration switch esterase FrsA,
                     DUF1100 family [Signal transduction mechanisms]; COG1073"
                     /db_xref="CDD:440691"
     CDS             1..337
                     /gene="ABHD13"
                     /coded_by="XM_054078331.1:162..1175"
                     /db_xref="GeneID:104062977"
ORIGIN      
        1 mekswmlwnf vkrwllalas wswslcricl lplivtfhly ggiillilif vsiagilykf
       61 qdvllyfpeq psssrlyvpm ptgiphenif iktkdgvlln lillrytgdn aaysptiiyf
      121 hgnagnighr lpnallmlvn lkvnlilvdy rgygksegea seeglyldse avldyvmtrs
      181 dldktkiflf grslggavai hlasenshri saivventfl sipymastlf sffpmrylpl
      241 wcyknkflsy rkisqcrmps lfisglsdql ippvmmkqly elspartkrl aifpdgthnd
      301 twqcqgyfta leqfikevik shspeemakt sssvtii
//
LOCUS       XP_053934318             204 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related and estrogen-regulated growth inhibitor-like protein
            [Cuculus canorus].
ACCESSION   XP_053934318
VERSION     XP_053934318.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078343.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..204
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..204
                     /product="ras-related and estrogen-regulated growth
                     inhibitor-like protein"
                     /calculated_mol_wt=22871
     Region          5..171
                     /region_name="RERG_RasL11_like"
                     /note="Ras-related and Estrogen-Regulated Growth inhibitor
                     (RERG) and Ras-like 11 (RasL11)-like families; cd04146"
                     /db_xref="CDD:206713"
     Site            10..17
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206713"
     Site            order(11..12,59..60)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206713"
     Site            order(13..18,31,122..123,125,152..154)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206713"
     Site            order(17..18,32,34,40..41,54..55,57,59..60,154)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206713"
     Site            order(33..36,39..41)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206713"
     Site            order(33..34,38..41)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206713"
     Site            35
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206713"
     Site            57..60
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206713"
     Site            order(59..60,67..78)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206713"
     Site            122..125
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206713"
     Site            152..154
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206713"
     CDS             1..204
                     /gene="RERGL"
                     /coded_by="XM_054078343.1:46..660"
                     /db_xref="GeneID:104065643"
ORIGIN      
        1 maevklavlg gsgagksala vrfltrrfig eyassaeciy tkhlcldgrq ihlemydpcs
       61 qpqrgklslt delhwadgfi vvydisdras fafakallyr ireshigack kmvessvflv
      121 gnkrdlchir evgwdegqkl amdnkcqfce lsaaehyqev vamftkvlrn itsnfkvkek
      181 rrpsgsksma klinnvfgkr rksv
//
LOCUS       XP_053934330            1481 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphatidylinositol 3-kinase C2 domain-containing subunit gamma
            [Cuculus canorus].
ACCESSION   XP_053934330
VERSION     XP_053934330.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078355.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1481
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1481
                     /product="phosphatidylinositol 3-kinase C2
                     domain-containing subunit gamma"
                     /calculated_mol_wt=168160
     Region          268..359
                     /region_name="PI3K_rbd"
                     /note="PI3-kinase family, ras-binding domain; cl02484"
                     /db_xref="CDD:413336"
     Region          515..671
                     /region_name="C2A_PI3K_class_II"
                     /note="C2 domain first repeat present in class II
                     phosphatidylinositol 3-kinases (PI3Ks); cd04012"
                     /db_xref="CDD:175979"
     Region          686..854
                     /region_name="PI3Ka"
                     /note="Phosphoinositide 3-kinase family, accessory domain
                     (PIK domain); PIK domain is conserved in PI3 and
                     PI4-kinases. Its role is unclear, but it has been
                     suggested to be involved in substrate presentation.
                     Phosphoinositide 3-kinases play an important role in...;
                     cl00271"
                     /db_xref="CDD:412275"
     Region          860..1213
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(930..934,936,954,956,990,1002..1005,1068,1072..1073,
                     1075,1085..1086)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270721"
     Region          1243..1343
                     /region_name="PX_domain"
                     /note="The Phox Homology domain, a phosphoinositide
                     binding module; cl02563"
                     /db_xref="CDD:470617"
     Site            order(1274..1276,1300..1301,1312)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:132768"
     Region          1365..1477
                     /region_name="C2"
                     /note="C2 domain; cl14603"
                     /db_xref="CDD:472691"
     CDS             1..1481
                     /gene="PIK3C2G"
                     /coded_by="XM_054078355.1:529..4974"
                     /db_xref="GeneID:104065641"
ORIGIN      
        1 mayfgrmpfs hnefhegrag nqasypmyys asaggvhlgf dqvvdevnne ffflgsshsh
       61 hheemlfpsd vfglnvpnqh ffgqplgayg elhpgnpvsh cqqdrmspti gfrsslqsdy
      121 rnfclvdpys ysqerelygg nsissvmnvf dssveksnin qsfqigfdnv ytqgpvflhn
      181 ypfrqevrdg sgngesyltn sskscdkkpa wlsnsghdre atdwsiqlve anqgsnentv
      241 afcnavekir naypafdlkt ntgkiwsvat kfpdhilges kfkisvltes spypllltrh
      301 agcvtrdlia eilhctnqys tqeecflsvc gsdeflqnnh tlgsheilrk attciqlrlh
      361 sisnlkqsla rtheddqslf gvnqllehtc awrliwrnlv svimkyrdqv ecllqnehkv
      421 dnvievakai csvlcfvetr ditdavkklr avplakaqns lqslgtpgka lieaavtels
      481 taisclihvy sssfdtnfql asipkspsca dispdsqlsf tvyaahnipe twvnsykafs
      541 fsctltyagr ticqvkickn ipaersfffl agwnekinfp lrikalpret mlaikllgvn
      601 naskstevla wtcsplypke rlvhgtvlls mtlystlttt mitpgicntd tptsvtlqid
      661 fpetnlefik pepeerigdd leepsedclk hitrlsqmhs llllseqqrr ilwfyryycn
      721 nqncslplvl gstpswdrmt vsemyavlrk wrfsnpleal glltfsfpdq dirrtavqqi
      781 enlsndelle ylpqlvqvlk fewslesplv klllnrslqs iqiahqlywl lknaqnevhf
      841 riwyqkvlaa lqfcagktln nefskeekli rilediaekv kaagdpkrke vlklelnklq
      901 qffqevqvcr lplnpalvaq gieadlcsyf tsnafplkia finanvpsgn invifkigdd
      961 lrqdmlvlqi vrvmdniwlq egldmqmiiy rclstgksqg lvqmvpdatt lakihresgl
     1021 igplkentik kwfhhhhple ssyqeairnf fyscagwcvv tfilgvcdrh sdnimltnag
     1081 hmfhidfgrf lghaqtfgsi rrdrapfift semeyfiteg gknpqrfqef velccrayni
     1141 vrkhsqllln llemmlhagl pelnsiqdlk yvydnlrpqd sdlqatsyft rkikeslecf
     1201 pvklnnliha lvqmsvtgsa kppapetipq ewmkldteks iaratilgfn kksdplylvq
     1261 vvqtcnvvsf veksfdqfsk lhshlqkqfp shalpefpys whlpfadleh rrvkdlnlyl
     1321 kqllsgsrkl annelvlsff lnwskntlae dlssvtlgpq sadhkpgvql visyertrlt
     1381 vmlkhmrnih lpdgsapsah aefyllpdpy evsrrktrta lkssdptyne iivydkvtel
     1441 kgrvlklvvk skgtfvgavn iqlssvqlne ekwyplgnsv i
//
LOCUS       XP_053934342             306 aa            linear   VRT 09-MAR-2023
DEFINITION  ribonuclease H2 subunit B isoform X1 [Cuculus canorus].
ACCESSION   XP_053934342
VERSION     XP_053934342.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078367.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..306
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..306
                     /product="ribonuclease H2 subunit B isoform X1"
                     /calculated_mol_wt=34636
     Region          17..299
                     /region_name="RNase_H2-B"
                     /note="Ribonuclease H2-B is a subunit of the eukaryotic
                     RNase H complex which cleaves RNA-DNA hybrids; cd09270"
                     /db_xref="CDD:187751"
     Site            order(19..21,39,63,71..75)
                     /site_type="other"
                     /note="heterotrimeric interface"
                     /db_xref="CDD:187751"
     CDS             1..306
                     /gene="RNASEH2B"
                     /coded_by="XM_054078367.1:232..1152"
                     /db_xref="GeneID:104066142"
ORIGIN      
        1 mhsgrqrpag ahpgqwvlia peaaieppkp pdseplftkl rnpstgeatl ylfnsgaqql
       61 fevkvyhedy rswfigqtvq qdgrllfvtp mdplflilyy likadkeqqg kyqpldqvvl
      121 dsdfpncpll lkcadvkqyi hhvteekeig sqkfhrysqe ktlkwlkkkv iqtvkalksn
      181 nisvgervha ptfisdkrit dtdedymrya hglvsdyipe dlskellkyl glpelkspaq
      241 epplkkrkls dvpveaedyt kfnssdlkpk kanskmsaaq kalakvdktg mksisaffss
      301 kpkatk
//
LOCUS       XP_053934354             305 aa            linear   VRT 09-MAR-2023
DEFINITION  ribonuclease H2 subunit B isoform X2 [Cuculus canorus].
ACCESSION   XP_053934354
VERSION     XP_053934354.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078379.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="ribonuclease H2 subunit B isoform X2"
                     /calculated_mol_wt=34508
     Region          17..298
                     /region_name="RNase_H2-B"
                     /note="Ribonuclease H2-B is a subunit of the eukaryotic
                     RNase H complex which cleaves RNA-DNA hybrids; cd09270"
                     /db_xref="CDD:187751"
     Site            order(19..21,39,63,71..75)
                     /site_type="other"
                     /note="heterotrimeric interface"
                     /db_xref="CDD:187751"
     CDS             1..305
                     /gene="RNASEH2B"
                     /coded_by="XM_054078379.1:233..1150"
                     /db_xref="GeneID:104066142"
ORIGIN      
        1 mhsgrqrpag ahpgqwvlia peaaieppkp pdseplftkl rnpstgeatl ylfnsgaqql
       61 fevkvyhedy rswfigqtvq qdgrllfvtp mdplflilyy likadkeqgk yqpldqvvld
      121 sdfpncplll kcadvkqyih hvteekeigs qkfhrysqek tlkwlkkkvi qtvkalksnn
      181 isvgervhap tfisdkritd tdedymryah glvsdyiped lskellkylg lpelkspaqe
      241 pplkkrklsd vpveaedytk fnssdlkpkk anskmsaaqk alakvdktgm ksisaffssk
      301 pkatk
//
LOCUS       XP_053934363             255 aa            linear   VRT 09-MAR-2023
DEFINITION  ribonuclease H2 subunit B isoform X3 [Cuculus canorus].
ACCESSION   XP_053934363
VERSION     XP_053934363.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078388.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..255
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..255
                     /product="ribonuclease H2 subunit B isoform X3"
                     /calculated_mol_wt=29157
     Region          17..204
                     /region_name="RNase_H2-B"
                     /note="Ribonuclease H2-B is a subunit of the eukaryotic
                     RNase H complex which cleaves RNA-DNA hybrids; cd09270"
                     /db_xref="CDD:187751"
     Site            order(19..21,39,63,71..75)
                     /site_type="other"
                     /note="heterotrimeric interface"
                     /db_xref="CDD:187751"
     CDS             1..255
                     /gene="RNASEH2B"
                     /coded_by="XM_054078388.1:233..1000"
                     /db_xref="GeneID:104066142"
ORIGIN      
        1 mhsgrqrpag ahpgqwvlia peaaieppkp pdseplftkl rnpstgeatl ylfnsgaqql
       61 fevkvyhedy rswfigqtvq qdgrllfvtp mdplflilyy likadkeqqg kyqpldqvvl
      121 dsdfpncpll lkcadvkqyi hhvteekeig sqkfhrysqe ktlkwlkkkv iqtvkalksn
      181 nisvgervha ptfisdkrit dtdedymrya hglvsdyipe dlskellkyl glpelkspaq
      241 epplkmpaqk rakkk
//
LOCUS       XP_009565738             569 aa            linear   VRT 09-MAR-2023
DEFINITION  podocalyxin isoform X1 [Cuculus canorus].
ACCESSION   XP_009565738
VERSION     XP_009565738.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009567443.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009565738.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..569
                     /product="podocalyxin isoform X1"
                     /calculated_mol_wt=59558
     Region          23..>326
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     Region          352..569
                     /region_name="CD34_antigen"
                     /note="CD34/Podocalyxin family; pfam06365"
                     /db_xref="CDD:461884"
     CDS             1..569
                     /gene="PODXL"
                     /coded_by="XM_009567443.2:73..1782"
                     /db_xref="GeneID:104065021"
ORIGIN      
        1 mraslllpll llgvssqddt kqstaspsen vqkttatsts ntqrttstss panpqstakv
       61 spttapgtns lttpaispla vqrttptskt ppnpatssaa vqrtsptptt stmssqlssg
      121 sgasaanpaa tsstnqtssa aslgslaatt aaspaatrvi sptaapgslg pavtssssmq
      181 aqgsqpsnqs tsttvstgvs tsslspglkn ygvfsptsit kqpqpspssp vhglvsstkp
      241 gsintsvtpf agsvssttsk atltlspgsv dkvskaattq ttgadqrsqt pgsvptkpas
      301 adqspasaqp sapvpgdqta sscpghqhln asfqnevick dqvqnnwptm ylkeartcae
      361 wrtasvnisf fesfcstgqh vfnasresct vmltsreprs qhwavqavvh lpldpekvle
      421 elkekdklee lgivnvtydk meremiinde fstpliitiv tlagslllia aiygcchqrf
      481 sqkkdqhihp dvpgfddghv alifnqrlte elqtmengyh dnptlevmet ssemqekkvn
      541 lngelgdswi vpldtlmked leeeedthl
//
LOCUS       XP_053934378             568 aa            linear   VRT 09-MAR-2023
DEFINITION  podocalyxin isoform X2 [Cuculus canorus].
ACCESSION   XP_053934378
VERSION     XP_053934378.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078403.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..568
                     /product="podocalyxin isoform X2"
                     /calculated_mol_wt=59430
     Region          23..>326
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     Region          352..568
                     /region_name="CD34_antigen"
                     /note="CD34/Podocalyxin family; pfam06365"
                     /db_xref="CDD:461884"
     CDS             1..568
                     /gene="PODXL"
                     /coded_by="XM_054078403.1:73..1779"
                     /db_xref="GeneID:104065021"
ORIGIN      
        1 mraslllpll llgvssqddt kqstaspsen vqkttatsts ntqrttstss panpqstakv
       61 spttapgtns lttpaispla vqrttptskt ppnpatssaa vqrtsptptt stmssqlssg
      121 sgasaanpaa tsstnqtssa aslgslaatt aaspaatrvi sptaapgslg pavtssssmq
      181 aqgsqpsnqs tsttvstgvs tsslspglkn ygvfsptsit kqpqpspssp vhglvsstkp
      241 gsintsvtpf agsvssttsk atltlspgsv dkvskaattq ttgadqrsqt pgsvptkpas
      301 adqspasaqp sapvpgdqta sscpghqhln asfqnevick dqvqnnwptm ylkeartcae
      361 wrtasvnisf fesfcstgqh vfnasresct vmltsreprs qhwavqavvh lpldpekvle
      421 elkekdklee lgivnvtydk meremiinde fstpliitiv tlagslllia aiygcchqrf
      481 sqkkdqhihp dvpgfddghv alifnrltee lqtmengyhd nptlevmets semqekkvnl
      541 ngelgdswiv pldtlmkedl eeeedthl
//
LOCUS       XP_053934387             550 aa            linear   VRT 09-MAR-2023
DEFINITION  podocalyxin isoform X3 [Cuculus canorus].
ACCESSION   XP_053934387
VERSION     XP_053934387.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078412.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..550
                     /product="podocalyxin isoform X3"
                     /calculated_mol_wt=57476
     Region          23..>326
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     Region          352..550
                     /region_name="CD34_antigen"
                     /note="CD34/Podocalyxin family; pfam06365"
                     /db_xref="CDD:461884"
     CDS             1..550
                     /gene="PODXL"
                     /coded_by="XM_054078412.1:73..1725"
                     /db_xref="GeneID:104065021"
ORIGIN      
        1 mraslllpll llgvssqddt kqstaspsen vqkttatsts ntqrttstss panpqstakv
       61 spttapgtns lttpaispla vqrttptskt ppnpatssaa vqrtsptptt stmssqlssg
      121 sgasaanpaa tsstnqtssa aslgslaatt aaspaatrvi sptaapgslg pavtssssmq
      181 aqgsqpsnqs tsttvstgvs tsslspglkn ygvfsptsit kqpqpspssp vhglvsstkp
      241 gsintsvtpf agsvssttsk atltlspgsv dkvskaattq ttgadqrsqt pgsvptkpas
      301 adqspasaqp sapvpgdqta sscpghqhln asfqnevick dqvqnnwptm ylkeartcae
      361 wrtasvnisf fesfcstgqh vfnasresct vmltsreprs qhwavqavvh lpldpekvle
      421 elkekdklee lgivnvtydk meremiinde fstpliitiv tlagslllia aiygcchqrf
      481 sqkkdqqrlt eelqtmengy hdnptlevme tssemqekkv nlngelgdsw ivpldtlmke
      541 dleeeedthl
//
LOCUS       XP_053934397             549 aa            linear   VRT 09-MAR-2023
DEFINITION  podocalyxin isoform X4 [Cuculus canorus].
ACCESSION   XP_053934397
VERSION     XP_053934397.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078422.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..549
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..549
                     /product="podocalyxin isoform X4"
                     /calculated_mol_wt=57348
     Region          23..>326
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     Region          352..549
                     /region_name="CD34_antigen"
                     /note="CD34/Podocalyxin family; pfam06365"
                     /db_xref="CDD:461884"
     CDS             1..549
                     /gene="PODXL"
                     /coded_by="XM_054078422.1:73..1722"
                     /db_xref="GeneID:104065021"
ORIGIN      
        1 mraslllpll llgvssqddt kqstaspsen vqkttatsts ntqrttstss panpqstakv
       61 spttapgtns lttpaispla vqrttptskt ppnpatssaa vqrtsptptt stmssqlssg
      121 sgasaanpaa tsstnqtssa aslgslaatt aaspaatrvi sptaapgslg pavtssssmq
      181 aqgsqpsnqs tsttvstgvs tsslspglkn ygvfsptsit kqpqpspssp vhglvsstkp
      241 gsintsvtpf agsvssttsk atltlspgsv dkvskaattq ttgadqrsqt pgsvptkpas
      301 adqspasaqp sapvpgdqta sscpghqhln asfqnevick dqvqnnwptm ylkeartcae
      361 wrtasvnisf fesfcstgqh vfnasresct vmltsreprs qhwavqavvh lpldpekvle
      421 elkekdklee lgivnvtydk meremiinde fstpliitiv tlagslllia aiygcchqrf
      481 sqkkdqrlte elqtmengyh dnptlevmet ssemqekkvn lngelgdswi vpldtlmked
      541 leeeedthl
//
LOCUS       XP_053934411             996 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 35 [Cuculus canorus].
ACCESSION   XP_053934411
VERSION     XP_053934411.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078436.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..996
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..996
                     /product="ubiquitin carboxyl-terminal hydrolase 35"
                     /calculated_mol_wt=112455
     Region          446..897
                     /region_name="Peptidase_C19H"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02664"
                     /db_xref="CDD:239129"
     Site            order(449,454,827,868)
                     /site_type="active"
                     /db_xref="CDD:239129"
     CDS             1..996
                     /gene="USP35"
                     /coded_by="XM_054078436.1:154..3144"
                     /db_xref="GeneID:104064145"
ORIGIN      
        1 mdkileavvm ssypnnvkqg lvrrvieaak qpmdseqcws mlelstklyl tgdtkykrei
       61 grevlevygh yhpeefeeff nvrfllsllq egygplgkrs hyvldyiqlg lqfvlespsa
      121 nsifsllrie vlrkvcerps pkqcakiskl ltqhpqcipt gkhqvlfcqq lircigqfqc
      181 isegeedime fleqvnkvsg llqriwrtqt sailpslkel ftiissteeq eapsnalasv
      241 vqfvplelmd gvirnltndd sitdvqmmta igrmidwvsw plgknidkwi iallkglaav
      301 kkfsilievt lskiekvfsk llypivrega lsvlqymlls fqhsheafhl llphiprlva
      361 slkkedsnsa assleqlael ihcmffrfsg fpdlyepvle avkalpipne drikhllgqn
      421 awtsqknela cfyprlasks etgkiglinl gntcymnsii qslfmasdfr hsvlnltegn
      481 sqplmtklqw lfaflehsqr paispesfls aswppwftpg aqqdcseylk ylldrlheee
      541 ktgkriyqkl kesslmsqam ehhylnktli ekmfggkmmt kirclkclnv ssreeaftdl
      601 slafppvdrh mdestsvlpv eeigpqfveh penasqltgs pwiqrkplma kdpaaslmpa
      661 etlgcqepge aanplsdnav vmdaakdpll tyreqarapk dsrsvpdlin yflsperlta
      721 enkyhcekca slqdaekvae ltegphylil tllrfsfdpq tmkrkkildn vsipvvlklp
      781 vlvapeetee vcrtgkdraa lesgfmsvvy dlcsvvvhsg issesghyyc ysrectdtvp
      841 hgqprdealk pasdkqldfe iqwylfndtr vsfssfesvs nvtsffpkdt ayvlfyrqrp
      901 grqscplhqa laeagclhge pplhkdlmea iskdnilylq eqekearnra ayisalpksp
      961 lwwrdfdrdk dddsspggcg patggsgsgs fhglvf
//
LOCUS       XP_009564738             996 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 35 [Cuculus canorus].
ACCESSION   XP_009564738
VERSION     XP_009564738.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566443.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564738.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..996
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..996
                     /product="ubiquitin carboxyl-terminal hydrolase 35"
                     /calculated_mol_wt=112455
     Region          446..897
                     /region_name="Peptidase_C19H"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02664"
                     /db_xref="CDD:239129"
     Site            order(449,454,827,868)
                     /site_type="active"
                     /db_xref="CDD:239129"
     CDS             1..996
                     /gene="USP35"
                     /coded_by="XM_009566443.2:647..3637"
                     /db_xref="GeneID:104064145"
ORIGIN      
        1 mdkileavvm ssypnnvkqg lvrrvieaak qpmdseqcws mlelstklyl tgdtkykrei
       61 grevlevygh yhpeefeeff nvrfllsllq egygplgkrs hyvldyiqlg lqfvlespsa
      121 nsifsllrie vlrkvcerps pkqcakiskl ltqhpqcipt gkhqvlfcqq lircigqfqc
      181 isegeedime fleqvnkvsg llqriwrtqt sailpslkel ftiissteeq eapsnalasv
      241 vqfvplelmd gvirnltndd sitdvqmmta igrmidwvsw plgknidkwi iallkglaav
      301 kkfsilievt lskiekvfsk llypivrega lsvlqymlls fqhsheafhl llphiprlva
      361 slkkedsnsa assleqlael ihcmffrfsg fpdlyepvle avkalpipne drikhllgqn
      421 awtsqknela cfyprlasks etgkiglinl gntcymnsii qslfmasdfr hsvlnltegn
      481 sqplmtklqw lfaflehsqr paispesfls aswppwftpg aqqdcseylk ylldrlheee
      541 ktgkriyqkl kesslmsqam ehhylnktli ekmfggkmmt kirclkclnv ssreeaftdl
      601 slafppvdrh mdestsvlpv eeigpqfveh penasqltgs pwiqrkplma kdpaaslmpa
      661 etlgcqepge aanplsdnav vmdaakdpll tyreqarapk dsrsvpdlin yflsperlta
      721 enkyhcekca slqdaekvae ltegphylil tllrfsfdpq tmkrkkildn vsipvvlklp
      781 vlvapeetee vcrtgkdraa lesgfmsvvy dlcsvvvhsg issesghyyc ysrectdtvp
      841 hgqprdealk pasdkqldfe iqwylfndtr vsfssfesvs nvtsffpkdt ayvlfyrqrp
      901 grqscplhqa laeagclhge pplhkdlmea iskdnilylq eqekearnra ayisalpksp
      961 lwwrdfdrdk dddsspggcg patggsgsgs fhglvf
//
LOCUS       XP_053934431             996 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 35 [Cuculus canorus].
ACCESSION   XP_053934431
VERSION     XP_053934431.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078456.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..996
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..996
                     /product="ubiquitin carboxyl-terminal hydrolase 35"
                     /calculated_mol_wt=112455
     Region          446..897
                     /region_name="Peptidase_C19H"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02664"
                     /db_xref="CDD:239129"
     Site            order(449,454,827,868)
                     /site_type="active"
                     /db_xref="CDD:239129"
     CDS             1..996
                     /gene="USP35"
                     /coded_by="XM_054078456.1:298..3288"
                     /db_xref="GeneID:104064145"
ORIGIN      
        1 mdkileavvm ssypnnvkqg lvrrvieaak qpmdseqcws mlelstklyl tgdtkykrei
       61 grevlevygh yhpeefeeff nvrfllsllq egygplgkrs hyvldyiqlg lqfvlespsa
      121 nsifsllrie vlrkvcerps pkqcakiskl ltqhpqcipt gkhqvlfcqq lircigqfqc
      181 isegeedime fleqvnkvsg llqriwrtqt sailpslkel ftiissteeq eapsnalasv
      241 vqfvplelmd gvirnltndd sitdvqmmta igrmidwvsw plgknidkwi iallkglaav
      301 kkfsilievt lskiekvfsk llypivrega lsvlqymlls fqhsheafhl llphiprlva
      361 slkkedsnsa assleqlael ihcmffrfsg fpdlyepvle avkalpipne drikhllgqn
      421 awtsqknela cfyprlasks etgkiglinl gntcymnsii qslfmasdfr hsvlnltegn
      481 sqplmtklqw lfaflehsqr paispesfls aswppwftpg aqqdcseylk ylldrlheee
      541 ktgkriyqkl kesslmsqam ehhylnktli ekmfggkmmt kirclkclnv ssreeaftdl
      601 slafppvdrh mdestsvlpv eeigpqfveh penasqltgs pwiqrkplma kdpaaslmpa
      661 etlgcqepge aanplsdnav vmdaakdpll tyreqarapk dsrsvpdlin yflsperlta
      721 enkyhcekca slqdaekvae ltegphylil tllrfsfdpq tmkrkkildn vsipvvlklp
      781 vlvapeetee vcrtgkdraa lesgfmsvvy dlcsvvvhsg issesghyyc ysrectdtvp
      841 hgqprdealk pasdkqldfe iqwylfndtr vsfssfesvs nvtsffpkdt ayvlfyrqrp
      901 grqscplhqa laeagclhge pplhkdlmea iskdnilylq eqekearnra ayisalpksp
      961 lwwrdfdrdk dddsspggcg patggsgsgs fhglvf
//
LOCUS       XP_053934441             996 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 35 [Cuculus canorus].
ACCESSION   XP_053934441
VERSION     XP_053934441.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078466.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..996
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..996
                     /product="ubiquitin carboxyl-terminal hydrolase 35"
                     /calculated_mol_wt=112455
     Region          446..897
                     /region_name="Peptidase_C19H"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02664"
                     /db_xref="CDD:239129"
     Site            order(449,454,827,868)
                     /site_type="active"
                     /db_xref="CDD:239129"
     CDS             1..996
                     /gene="USP35"
                     /coded_by="XM_054078466.1:76..3066"
                     /db_xref="GeneID:104064145"
ORIGIN      
        1 mdkileavvm ssypnnvkqg lvrrvieaak qpmdseqcws mlelstklyl tgdtkykrei
       61 grevlevygh yhpeefeeff nvrfllsllq egygplgkrs hyvldyiqlg lqfvlespsa
      121 nsifsllrie vlrkvcerps pkqcakiskl ltqhpqcipt gkhqvlfcqq lircigqfqc
      181 isegeedime fleqvnkvsg llqriwrtqt sailpslkel ftiissteeq eapsnalasv
      241 vqfvplelmd gvirnltndd sitdvqmmta igrmidwvsw plgknidkwi iallkglaav
      301 kkfsilievt lskiekvfsk llypivrega lsvlqymlls fqhsheafhl llphiprlva
      361 slkkedsnsa assleqlael ihcmffrfsg fpdlyepvle avkalpipne drikhllgqn
      421 awtsqknela cfyprlasks etgkiglinl gntcymnsii qslfmasdfr hsvlnltegn
      481 sqplmtklqw lfaflehsqr paispesfls aswppwftpg aqqdcseylk ylldrlheee
      541 ktgkriyqkl kesslmsqam ehhylnktli ekmfggkmmt kirclkclnv ssreeaftdl
      601 slafppvdrh mdestsvlpv eeigpqfveh penasqltgs pwiqrkplma kdpaaslmpa
      661 etlgcqepge aanplsdnav vmdaakdpll tyreqarapk dsrsvpdlin yflsperlta
      721 enkyhcekca slqdaekvae ltegphylil tllrfsfdpq tmkrkkildn vsipvvlklp
      781 vlvapeetee vcrtgkdraa lesgfmsvvy dlcsvvvhsg issesghyyc ysrectdtvp
      841 hgqprdealk pasdkqldfe iqwylfndtr vsfssfesvs nvtsffpkdt ayvlfyrqrp
      901 grqscplhqa laeagclhge pplhkdlmea iskdnilylq eqekearnra ayisalpksp
      961 lwwrdfdrdk dddsspggcg patggsgsgs fhglvf
//
LOCUS       XP_053934453             260 aa            linear   VRT 09-MAR-2023
DEFINITION  BTB/POZ domain-containing protein KCTD21 [Cuculus canorus].
ACCESSION   XP_053934453
VERSION     XP_053934453.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078478.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..260
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..260
                     /product="BTB/POZ domain-containing protein KCTD21"
                     /calculated_mol_wt=29732
     Region          3..100
                     /region_name="BTB_POZ"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; cl38908"
                     /db_xref="CDD:453885"
     Region          107..260
                     /region_name="KCTD11_21_C"
                     /note="BTB/POZ domain-containing protein KCTD11/21
                     C-terminus; pfam19329"
                     /db_xref="CDD:466043"
     CDS             1..260
                     /gene="KCTD21"
                     /coded_by="XM_054078478.1:287..1069"
                     /db_xref="GeneID:104064144"
ORIGIN      
        1 msepitlnvg gklyttslst ltsfpdsmlg amfsgkiptk kdrqgncfid rdgkifryil
       61 nflrtshldl pedfqemgll rrevdfyqiq pliealqeke velskaekna mlnisldqkt
      121 qtvhftvrea pqiyslsssn mevfsahifs tsclflkllg sklyycfngn lssissylqd
      181 pnhltldwva sveglpeeey trqnlkrlwv vpdnkqinsf qvfveevlki amsdgfcids
      241 shphtsdfmn nkiirliryk
//
LOCUS       XP_053934463             260 aa            linear   VRT 09-MAR-2023
DEFINITION  BTB/POZ domain-containing protein KCTD21 [Cuculus canorus].
ACCESSION   XP_053934463
VERSION     XP_053934463.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078488.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..260
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..260
                     /product="BTB/POZ domain-containing protein KCTD21"
                     /calculated_mol_wt=29732
     Region          3..100
                     /region_name="BTB_POZ"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; cl38908"
                     /db_xref="CDD:453885"
     Region          107..260
                     /region_name="KCTD11_21_C"
                     /note="BTB/POZ domain-containing protein KCTD11/21
                     C-terminus; pfam19329"
                     /db_xref="CDD:466043"
     CDS             1..260
                     /gene="KCTD21"
                     /coded_by="XM_054078488.1:221..1003"
                     /db_xref="GeneID:104064144"
ORIGIN      
        1 msepitlnvg gklyttslst ltsfpdsmlg amfsgkiptk kdrqgncfid rdgkifryil
       61 nflrtshldl pedfqemgll rrevdfyqiq pliealqeke velskaekna mlnisldqkt
      121 qtvhftvrea pqiyslsssn mevfsahifs tsclflkllg sklyycfngn lssissylqd
      181 pnhltldwva sveglpeeey trqnlkrlwv vpdnkqinsf qvfveevlki amsdgfcids
      241 shphtsdfmn nkiirliryk
//
LOCUS       XP_053934470             260 aa            linear   VRT 09-MAR-2023
DEFINITION  BTB/POZ domain-containing protein KCTD21 [Cuculus canorus].
ACCESSION   XP_053934470
VERSION     XP_053934470.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078495.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..260
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..260
                     /product="BTB/POZ domain-containing protein KCTD21"
                     /calculated_mol_wt=29732
     Region          3..100
                     /region_name="BTB_POZ"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; cl38908"
                     /db_xref="CDD:453885"
     Region          107..260
                     /region_name="KCTD11_21_C"
                     /note="BTB/POZ domain-containing protein KCTD11/21
                     C-terminus; pfam19329"
                     /db_xref="CDD:466043"
     CDS             1..260
                     /gene="KCTD21"
                     /coded_by="XM_054078495.1:377..1159"
                     /db_xref="GeneID:104064144"
ORIGIN      
        1 msepitlnvg gklyttslst ltsfpdsmlg amfsgkiptk kdrqgncfid rdgkifryil
       61 nflrtshldl pedfqemgll rrevdfyqiq pliealqeke velskaekna mlnisldqkt
      121 qtvhftvrea pqiyslsssn mevfsahifs tsclflkllg sklyycfngn lssissylqd
      181 pnhltldwva sveglpeeey trqnlkrlwv vpdnkqinsf qvfveevlki amsdgfcids
      241 shphtsdfmn nkiirliryk
//
LOCUS       XP_053934476             260 aa            linear   VRT 09-MAR-2023
DEFINITION  BTB/POZ domain-containing protein KCTD21 [Cuculus canorus].
ACCESSION   XP_053934476
VERSION     XP_053934476.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078501.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..260
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..260
                     /product="BTB/POZ domain-containing protein KCTD21"
                     /calculated_mol_wt=29732
     Region          3..100
                     /region_name="BTB_POZ"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; cl38908"
                     /db_xref="CDD:453885"
     Region          107..260
                     /region_name="KCTD11_21_C"
                     /note="BTB/POZ domain-containing protein KCTD11/21
                     C-terminus; pfam19329"
                     /db_xref="CDD:466043"
     CDS             1..260
                     /gene="KCTD21"
                     /coded_by="XM_054078501.1:88..870"
                     /db_xref="GeneID:104064144"
ORIGIN      
        1 msepitlnvg gklyttslst ltsfpdsmlg amfsgkiptk kdrqgncfid rdgkifryil
       61 nflrtshldl pedfqemgll rrevdfyqiq pliealqeke velskaekna mlnisldqkt
      121 qtvhftvrea pqiyslsssn mevfsahifs tsclflkllg sklyycfngn lssissylqd
      181 pnhltldwva sveglpeeey trqnlkrlwv vpdnkqinsf qvfveevlki amsdgfcids
      241 shphtsdfmn nkiirliryk
//
LOCUS       XP_053934484             260 aa            linear   VRT 09-MAR-2023
DEFINITION  BTB/POZ domain-containing protein KCTD21 [Cuculus canorus].
ACCESSION   XP_053934484
VERSION     XP_053934484.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078509.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..260
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..260
                     /product="BTB/POZ domain-containing protein KCTD21"
                     /calculated_mol_wt=29732
     Region          3..100
                     /region_name="BTB_POZ"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; cl38908"
                     /db_xref="CDD:453885"
     Region          107..260
                     /region_name="KCTD11_21_C"
                     /note="BTB/POZ domain-containing protein KCTD11/21
                     C-terminus; pfam19329"
                     /db_xref="CDD:466043"
     CDS             1..260
                     /gene="KCTD21"
                     /coded_by="XM_054078509.1:236..1018"
                     /db_xref="GeneID:104064144"
ORIGIN      
        1 msepitlnvg gklyttslst ltsfpdsmlg amfsgkiptk kdrqgncfid rdgkifryil
       61 nflrtshldl pedfqemgll rrevdfyqiq pliealqeke velskaekna mlnisldqkt
      121 qtvhftvrea pqiyslsssn mevfsahifs tsclflkllg sklyycfngn lssissylqd
      181 pnhltldwva sveglpeeey trqnlkrlwv vpdnkqinsf qvfveevlki amsdgfcids
      241 shphtsdfmn nkiirliryk
//
LOCUS       XP_053934498            1470 aa            linear   VRT 09-MAR-2023
DEFINITION  inositol 1,4,5-triphosphate receptor associated 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053934498
VERSION     XP_053934498.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078523.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1470
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1470
                     /product="inositol 1,4,5-triphosphate receptor associated
                     2 isoform X1"
                     /calculated_mol_wt=165811
     Region          228..292
                     /region_name="EF-hand_9"
                     /note="EF-hand domain; pfam14658"
                     /db_xref="CDD:405361"
     Region          351..540
                     /region_name="KASH_CCD"
                     /note="Coiled-coil region of CCDC155 or KASH; pfam14662"
                     /db_xref="CDD:405365"
     Region          <361..>854
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          967..1470
                     /region_name="MRVI1"
                     /note="MRVI1 protein; pfam05781"
                     /db_xref="CDD:461738"
     CDS             1..1470
                     /gene="IRAG2"
                     /coded_by="XM_054078523.1:1..4413"
                     /db_xref="GeneID:104067377"
ORIGIN      
        1 mssehgankr hhnpvdsicr kiksiqmmdq asntalqipk fqsqnfdspq cnikknleei
       61 lkkrtfrshd sqfrstdsql lspssdsvls adlqlvspcl ghmsdscsan atysvtksee
      121 rsssswmpvs pmencspsyf rsreantqnk lcalsniksk dvprnqkylt sspnlyffps
      181 dkksesavik ssvpkrlsls ergrkqtlgy ktemydvsli ceedllttif cacdidrtgk
      241 vavskivdyl rhttsrgled sglqelcnml dpdqkdvsmd letyhaimke wiedckrnwe
      301 vsatedptas medleqkvhk niseakktpg rmnvtsgsle afggdvskgd metsdliicv
      361 adlqynnqkl qeennklklt leavdetnnk lladnenlhq qvksiqhsvl klksleeele
      421 daksnlnlse ekrqqilcqn kqlekenqsl itkiaslqee nirnnmdtdg lqkkilelsk
      481 naaelqiqvh myestvvnke asliqkeqdi kelkltivec ssiietlrae knkllenmqh
      541 vqqelisngl sfpllcklns nipegmnslh celelaqsse itktewtsln etldrevqfl
      601 lqepeyvgek fkaikqnlvs grvylnmdea seteelvmss lqwlkdpdvn mqqswerklv
      661 vlkqelgekr rlwvhklnll eqykesldkd fiqiasnlrr tkteqlhlrk elsarqrele
      721 tvkqlqeeta graealglel qkatkqleda skqaedqvea lhsaceeats lkcklkeais
      781 eqqklkdvna altstcqllq ekvedqkmtv nalrwellqr rlcellcqcc aelesdygll
      841 ptsaepvkak qpqrskqlws kgptlcteyp ktlpsdilcw hstslvdalt leisypnnsp
      901 vqnwdqlcrq ssgsytferc nlgntyasdv tsvdcrwkic sagnntdadl pvsittmdfs
      961 itegdcveps lpaslipssd hltspqevla spleraapat gclvkeeksp kylhekkeda
     1021 ptsvamernk dkdpagpvsg vdltkkefcl vteehktavq nilkqepevd qekksnkerr
     1081 eeapavapnr kgsspttggi kadktkqnep dspsekevea eflrlslgfk cdlftldkrv
     1141 rleersrdla eenlkkeitn alkmlealvp lceednqaqe iikklqkslq flsqyaarva
     1201 sraemlgain qesrvskave vmiqhvenlk rmyakehael eelkqvllqn ersfsslgdr
     1261 destnkklpn pfkpssslrr vsiatlprsa gnagiglsla qlresdgdew sdklnrrsss
     1321 wgrlgakqne krpslqrfis tyswteyede hsemkteqle spaevqeppp rkestsekgk
     1381 ypskwslesa ynlmlswash fktsfsnank tlwisvsilv llaaltsflt glslqrpada
     1441 apvgtgdswt slqqllwpyt glqhngpppv
//
LOCUS       XP_053934506             514 aa            linear   VRT 09-MAR-2023
DEFINITION  inositol 1,4,5-triphosphate receptor associated 2 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053934506
VERSION     XP_053934506.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078531.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..514
                     /product="inositol 1,4,5-triphosphate receptor associated
                     2 isoform X2"
                     /calculated_mol_wt=57266
     Region          11..514
                     /region_name="MRVI1"
                     /note="MRVI1 protein; pfam05781"
                     /db_xref="CDD:461738"
     CDS             1..514
                     /gene="IRAG2"
                     /coded_by="XM_054078531.1:605..2149"
                     /db_xref="GeneID:104067377"
ORIGIN      
        1 mdfsitegdc vepslpasli pssdhltspq evlasplera apatgclvke ekspkylhek
       61 kedaptsvam ernkdkdpag pvsgvdltkk efclvteehk tavqnilkqe pevdqekksn
      121 kerreeapav apnrkgsspt tggikadktk qnepdspsek eveaeflrls lgfkcdlftl
      181 dkrvrleers rdlaeenlkk eitnalkmle alvplceedn qaqeiikklq kslqflsqya
      241 arvasraeml gainqesrvs kavevmiqhv enlkrmyake haeleelkqv llqnersfss
      301 lgdrdestnk klpnpfkpss slrrvsiatl prsagnagig lslaqlresd gdewsdklnr
      361 rssswgrlga kqnekrpslq rfistyswte yedehsemkt eqlespaevq eppprkests
      421 ekgkypskws lesaynlmls washfktsfs nanktlwisv silvllaalt sfltglslqr
      481 padaapvgtg dswtslqqll wpytglqhng pppv
//
LOCUS       XP_053934516             719 aa            linear   VRT 09-MAR-2023
DEFINITION  dynein axonemal intermediate chain 7 isoform X1 [Cuculus canorus].
ACCESSION   XP_053934516
VERSION     XP_053934516.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078541.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..719
                     /product="dynein axonemal intermediate chain 7 isoform X1"
                     /calculated_mol_wt=82790
     Region          38..229
                     /region_name="Casc1_N"
                     /note="Cancer susceptibility candidate 1 N-terminus;
                     pfam15927"
                     /db_xref="CDD:464947"
     Region          465..>616
                     /region_name="Casc1_C"
                     /note="Cancer susceptibility candidate 1 C-terminal;
                     pfam12366"
                     /db_xref="CDD:432508"
     CDS             1..719
                     /gene="DNAI7"
                     /coded_by="XM_054078541.1:33..2192"
                     /db_xref="GeneID:104067387"
ORIGIN      
        1 mgpkkkkksg gkkvskaerl rlqkeeeeer rlkeeeearl qaeqeaarle keriqqelme
       61 klmakeqerr eselaelhsl eqkflsaqqw ktdyrarakw ehylscdgsp dptvlqeint
      121 fmslwredqn eniqlvmkkg elllnliekl qfllldtppn eiteketvqy qesilelrnl
      181 lhqkyngate lllktanmye dsdtgnmqav ikdknitfci wanlkkkvrf knhkfcdaqh
      241 gfdlpkslav ssvairilht hydhvsplwl qcqsvpelev ldskeliqhs kdnreepeee
      301 gkkareepnm steeemwsna rnnaisfqen snktadvnei teeeaekkse ildvpsevqn
      361 ppmqeetnek eevitdeniv dlqqfvpvgg vyhidalqlp pqvkqikdws mvelldvgle
      421 afpypteeae dathtaikit lrlsdnvmyf edpvvarwda ageqwrtdgi snikyeaqek
      481 sitfemgafy tigllqdahl nmpyrawelq ptgvdeallt vttvfatvqi qikgnqcmly
      541 svlveekdvl shltgkwisp velrtvlkka gvnifpgeys hkyisvkkka plaevrayqq
      601 malvasafaf awskwnleag qeqvvfkvse hlkadsvkde dwslylfngr kaqklkitet
      661 seafseelee dsefhstlyh vlkdfaskea idkveaadfl fvdgvyqlll amrlltyss
//
LOCUS       XP_053934523             688 aa            linear   VRT 09-MAR-2023
DEFINITION  dynein axonemal intermediate chain 7 isoform X2 [Cuculus canorus].
ACCESSION   XP_053934523
VERSION     XP_053934523.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078548.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..688
                     /product="dynein axonemal intermediate chain 7 isoform X2"
                     /calculated_mol_wt=79194
     Region          38..229
                     /region_name="Casc1_N"
                     /note="Cancer susceptibility candidate 1 N-terminus;
                     pfam15927"
                     /db_xref="CDD:464947"
     CDS             1..688
                     /gene="DNAI7"
                     /coded_by="XM_054078548.1:33..2099"
                     /db_xref="GeneID:104067387"
ORIGIN      
        1 mgpkkkkksg gkkvskaerl rlqkeeeeer rlkeeeearl qaeqeaarle keriqqelme
       61 klmakeqerr eselaelhsl eqkflsaqqw ktdyrarakw ehylscdgsp dptvlqeint
      121 fmslwredqn eniqlvmkkg elllnliekl qfllldtppn eiteketvqy qesilelrnl
      181 lhqkyngate lllktanmye dsdtgnmqav ikdknitfci wanlkkkvrf knhkfcdaqh
      241 gfdlpkslav ssvairilht hydhvsplwl qcqsvpelev ldskeliqhs kdnreepeee
      301 gkkareepnm steeemwsna rnnaisfqen snktadvnei teeeaekkse ildvpsevqn
      361 ppmqeetnek eevitdeniv dlqqfvpvgg vyhidalqlp pqvkqikdws mvelldvgle
      421 afpypteeae dathtaikit lrlsdnvmyf edpvvarwda agllqdahln mpyrawelqp
      481 tgvdealltv ttvfatvqiq ikgnqcmlys vlveekdvls hltgkwispv elrtvlkkag
      541 vnifpgeysh kyisvkkkap laevrayqqm alvasafafa wskwnleagq eqvvfkvseh
      601 lkadsvkded wslylfngrk aqklkitets eafseeleed sefhstlyhv lkdfaskeai
      661 dkveaadflf vdgvyqllla mrlltyss
//
LOCUS       XP_053934531             663 aa            linear   VRT 09-MAR-2023
DEFINITION  dynein axonemal intermediate chain 7 isoform X3 [Cuculus canorus].
ACCESSION   XP_053934531
VERSION     XP_053934531.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078556.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..663
                     /product="dynein axonemal intermediate chain 7 isoform X3"
                     /calculated_mol_wt=76446
     Region          38..229
                     /region_name="Casc1_N"
                     /note="Cancer susceptibility candidate 1 N-terminus;
                     pfam15927"
                     /db_xref="CDD:464947"
     CDS             1..663
                     /gene="DNAI7"
                     /coded_by="XM_054078556.1:33..2024"
                     /db_xref="GeneID:104067387"
ORIGIN      
        1 mgpkkkkksg gkkvskaerl rlqkeeeeer rlkeeeearl qaeqeaarle keriqqelme
       61 klmakeqerr eselaelhsl eqkflsaqqw ktdyrarakw ehylscdgsp dptvlqeint
      121 fmslwredqn eniqlvmkkg elllnliekl qfllldtppn eiteketvqy qesilelrnl
      181 lhqkyngate lllktanmye dsdtgnmqav ikdknitfci wanlkkkvrf knhkfcdaqh
      241 gfdlpkslav ssvairilht hydhvsplwl qcqsvpelev ldskeliqhs kdnreepeee
      301 gkkareepnm steeemwsna rnnaisfqen snktadvnei teeeaekkse ildvpsevqn
      361 ppmqeetnek eevitdeniv dlqqfvpvgg vyhidalqlp pqvkqikdws mvelldvgle
      421 afpypteeae dathtaikit lrlsdnvmyf edpvvarwda ageqwrtdgi snikyeaqek
      481 sitfemgafy tigllqdahl nmpyrawelq ptgvdeallt vttvfatvqi qikaplaevr
      541 ayqqmalvas afafawskwn leagqeqvvf kvsehlkads vkdedwslyl fngrkaqklk
      601 itetseafse eleedsefhs tlyhvlkdfa skeaidkvea adflfvdgvy qlllamrllt
      661 yss
//
LOCUS       XP_053934539             632 aa            linear   VRT 09-MAR-2023
DEFINITION  dynein axonemal intermediate chain 7 isoform X4 [Cuculus canorus].
ACCESSION   XP_053934539
VERSION     XP_053934539.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078564.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..632
                     /product="dynein axonemal intermediate chain 7 isoform X4"
                     /calculated_mol_wt=72850
     Region          38..229
                     /region_name="Casc1_N"
                     /note="Cancer susceptibility candidate 1 N-terminus;
                     pfam15927"
                     /db_xref="CDD:464947"
     CDS             1..632
                     /gene="DNAI7"
                     /coded_by="XM_054078564.1:33..1931"
                     /db_xref="GeneID:104067387"
ORIGIN      
        1 mgpkkkkksg gkkvskaerl rlqkeeeeer rlkeeeearl qaeqeaarle keriqqelme
       61 klmakeqerr eselaelhsl eqkflsaqqw ktdyrarakw ehylscdgsp dptvlqeint
      121 fmslwredqn eniqlvmkkg elllnliekl qfllldtppn eiteketvqy qesilelrnl
      181 lhqkyngate lllktanmye dsdtgnmqav ikdknitfci wanlkkkvrf knhkfcdaqh
      241 gfdlpkslav ssvairilht hydhvsplwl qcqsvpelev ldskeliqhs kdnreepeee
      301 gkkareepnm steeemwsna rnnaisfqen snktadvnei teeeaekkse ildvpsevqn
      361 ppmqeetnek eevitdeniv dlqqfvpvgg vyhidalqlp pqvkqikdws mvelldvgle
      421 afpypteeae dathtaikit lrlsdnvmyf edpvvarwda agllqdahln mpyrawelqp
      481 tgvdealltv ttvfatvqiq ikaplaevra yqqmalvasa fafawskwnl eagqeqvvfk
      541 vsehlkadsv kdedwslylf ngrkaqklki tetseafsee leedsefhst lyhvlkdfas
      601 keaidkveaa dflfvdgvyq lllamrllty ss
//
LOCUS       XP_053934548             591 aa            linear   VRT 09-MAR-2023
DEFINITION  dynein axonemal intermediate chain 7 isoform X5 [Cuculus canorus].
ACCESSION   XP_053934548
VERSION     XP_053934548.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078573.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..591
                     /product="dynein axonemal intermediate chain 7 isoform X5"
                     /calculated_mol_wt=67951
     Region          38..196
                     /region_name="Casc1_N"
                     /note="Cancer susceptibility candidate 1 N-terminus;
                     pfam15927"
                     /db_xref="CDD:464947"
     Region          337..>488
                     /region_name="Casc1_C"
                     /note="Cancer susceptibility candidate 1 C-terminal;
                     pfam12366"
                     /db_xref="CDD:432508"
     CDS             1..591
                     /gene="DNAI7"
                     /coded_by="XM_054078573.1:33..1808"
                     /db_xref="GeneID:104067387"
ORIGIN      
        1 mgpkkkkksg gkkvskaerl rlqkeeeeer rlkeeeearl qaeqeaarle keriqqelme
       61 klmakeqerr eselaelhsl eqkflsaqqw ktdyrarakw ehylscdgsp dptvlqeint
      121 fmslwredqn eniqlvmkkg elllnliekl qfllldtppn eiteketvqy qesilelrnl
      181 lhqkyngate lllknaisfq ensnktadvn eiteeeaekk seildvpsev qnppmqeetn
      241 ekeevitden ivdlqqfvpv ggvyhidalq lppqvkqikd wsmvelldvg leafpyptee
      301 aedathtaik itlrlsdnvm yfedpvvarw daageqwrtd gisnikyeaq eksitfemga
      361 fytigllqda hlnmpyrawe lqptgvdeal ltvttvfatv qiqikgnqcm lysvlveekd
      421 vlshltgkwi spvelrtvlk kagvnifpge yshkyisvkk kaplaevray qqmalvasaf
      481 afawskwnle agqeqvvfkv sehlkadsvk dedwslylfn grkaqklkit etseafseel
      541 eedsefhstl yhvlkdfask eaidkveaad flfvdgvyql llamrlltys s
//
LOCUS       XP_053934558             111 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related protein Rap-2a-like [Cuculus canorus].
ACCESSION   XP_053934558
VERSION     XP_053934558.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078583.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..111
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..111
                     /product="ras-related protein Rap-2a-like"
                     /calculated_mol_wt=12554
     Region          16..>105
                     /region_name="P-loop containing Nucleoside Triphosphate
                     Hydrolases"
                     /note="Members of the P-loop NTPase domain superfamily are
                     characterized by a conserved nucleotide phosphate-binding
                     motif, also referred to as the Walker A motif
                     (GxxxxGK[S/T], where x is any residue), and the Walker B
                     motif (hhhh[D/E], where h is a...; cl38936"
                     /db_xref="CDD:476819"
     Site            35
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206648"
     Site            38..40
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206648"
     Site            57..60
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206648"
     Site            order(59..60,76..77)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206648"
     CDS             1..111
                     /gene="LOC128853472"
                     /coded_by="XM_054078583.1:261..596"
                     /db_xref="GeneID:128853472"
ORIGIN      
        1 mreykvvvlg sggvgksalt vqfvtgtfie kydptiedfy rkeievdasp svleildtag
       61 teqfasmrdl yikngqgfil vyslvnqqsf qdirpmrdqi irvkrcsldf y
//
LOCUS       XP_053934569             523 aa            linear   VRT 09-MAR-2023
DEFINITION  F-box-like/WD repeat-containing protein TBL1X [Cuculus canorus].
ACCESSION   XP_053934569
VERSION     XP_053934569.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078594.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..523
                     /product="F-box-like/WD repeat-containing protein TBL1X"
                     /calculated_mol_wt=56439
     Region          7..31
                     /region_name="LisH"
                     /note="pfam08513"
                     /db_xref="CDD:462501"
     Region          173..479
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cd00200"
                     /db_xref="CDD:238121"
     Site            order(177,195,199,205..206,228..229,251,255,261,273..274,
                     291,296,302..303,316,332,337,343..344,356..357,375,379,
                     385..386,398..399,425,430,436..437,449..450,468,472,
                     478..479)
                     /site_type="active"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     Region          181..228
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          237..273
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          279..315
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          320..355
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          362..397
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          403..448
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <453..523
                     /region_name="8prop_heme_binding_protein"
                     /note="eight-bladed beta-propeller heme-binding domain in
                     cytochrome cd1 and similar proteins; cl49617"
                     /db_xref="CDD:483957"
     Region          454..492
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          456..490
                     /region_name="propeller blade"
                     /note="propeller blade [structural motif]"
                     /db_xref="CDD:467720"
     Region          495..518
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..523
                     /gene="TBL1X"
                     /coded_by="XM_054078594.1:318..1889"
                     /db_xref="GeneID:104054880"
ORIGIN      
        1 msitsdevnf lvyrylqesg fshsaftfgi eshisqsnin gtlvppaali silqkglqyv
       61 eaeisinedg tvfdgrpies lslidavmpd vvqtrqqafr eklaqqqasa aaaaaataat
      121 agatttavsq qntpkngeat vngeengaha innhskpmei dgdveippnk atvlrghese
      181 vficawnpvs dllasgsgds tariwnlnen snssstqlvl rhciregghd vpsnkdvtsl
      241 dwnsdgtlla tgsydgfari wtedgnlast lgqhkgpifa lkwnkkgnyi lsagvdktti
      301 iwdahtgeak qqfpfhsapa ldvdwqnntt fascstdmci hvcrlgcdrp vktfqghtne
      361 vnaikwdpsg mllascsddm tlkiwsmkqd tcvhdlqahs keiytikwsp tgpgtsnpna
      421 nimlasasfd stvrlwdvdr gvcihtltkh qepvysvafs pdgkylasgs fdkcvhiwnt
      481 qsgtlvhsyr gtggifevcw nargdkvgas asdgsvcvld lrk
//
LOCUS       XP_053934579             523 aa            linear   VRT 09-MAR-2023
DEFINITION  F-box-like/WD repeat-containing protein TBL1X [Cuculus canorus].
ACCESSION   XP_053934579
VERSION     XP_053934579.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078604.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..523
                     /product="F-box-like/WD repeat-containing protein TBL1X"
                     /calculated_mol_wt=56439
     Region          7..31
                     /region_name="LisH"
                     /note="pfam08513"
                     /db_xref="CDD:462501"
     Region          173..479
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cd00200"
                     /db_xref="CDD:238121"
     Site            order(177,195,199,205..206,228..229,251,255,261,273..274,
                     291,296,302..303,316,332,337,343..344,356..357,375,379,
                     385..386,398..399,425,430,436..437,449..450,468,472,
                     478..479)
                     /site_type="active"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     Region          181..228
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          237..273
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          279..315
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          320..355
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          362..397
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          403..448
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <453..523
                     /region_name="8prop_heme_binding_protein"
                     /note="eight-bladed beta-propeller heme-binding domain in
                     cytochrome cd1 and similar proteins; cl49617"
                     /db_xref="CDD:483957"
     Region          454..492
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          456..490
                     /region_name="propeller blade"
                     /note="propeller blade [structural motif]"
                     /db_xref="CDD:467720"
     Region          495..518
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..523
                     /gene="TBL1X"
                     /coded_by="XM_054078604.1:290..1861"
                     /db_xref="GeneID:104054880"
ORIGIN      
        1 msitsdevnf lvyrylqesg fshsaftfgi eshisqsnin gtlvppaali silqkglqyv
       61 eaeisinedg tvfdgrpies lslidavmpd vvqtrqqafr eklaqqqasa aaaaaataat
      121 agatttavsq qntpkngeat vngeengaha innhskpmei dgdveippnk atvlrghese
      181 vficawnpvs dllasgsgds tariwnlnen snssstqlvl rhciregghd vpsnkdvtsl
      241 dwnsdgtlla tgsydgfari wtedgnlast lgqhkgpifa lkwnkkgnyi lsagvdktti
      301 iwdahtgeak qqfpfhsapa ldvdwqnntt fascstdmci hvcrlgcdrp vktfqghtne
      361 vnaikwdpsg mllascsddm tlkiwsmkqd tcvhdlqahs keiytikwsp tgpgtsnpna
      421 nimlasasfd stvrlwdvdr gvcihtltkh qepvysvafs pdgkylasgs fdkcvhiwnt
      481 qsgtlvhsyr gtggifevcw nargdkvgas asdgsvcvld lrk
//
LOCUS       XP_053934588             523 aa            linear   VRT 09-MAR-2023
DEFINITION  F-box-like/WD repeat-containing protein TBL1X [Cuculus canorus].
ACCESSION   XP_053934588
VERSION     XP_053934588.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078613.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..523
                     /product="F-box-like/WD repeat-containing protein TBL1X"
                     /calculated_mol_wt=56439
     Region          7..31
                     /region_name="LisH"
                     /note="pfam08513"
                     /db_xref="CDD:462501"
     Region          173..479
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cd00200"
                     /db_xref="CDD:238121"
     Site            order(177,195,199,205..206,228..229,251,255,261,273..274,
                     291,296,302..303,316,332,337,343..344,356..357,375,379,
                     385..386,398..399,425,430,436..437,449..450,468,472,
                     478..479)
                     /site_type="active"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     Region          181..228
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          237..273
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          279..315
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          320..355
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          362..397
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          403..448
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <453..523
                     /region_name="8prop_heme_binding_protein"
                     /note="eight-bladed beta-propeller heme-binding domain in
                     cytochrome cd1 and similar proteins; cl49617"
                     /db_xref="CDD:483957"
     Region          454..492
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          456..490
                     /region_name="propeller blade"
                     /note="propeller blade [structural motif]"
                     /db_xref="CDD:467720"
     Region          495..518
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..523
                     /gene="TBL1X"
                     /coded_by="XM_054078613.1:314..1885"
                     /db_xref="GeneID:104054880"
ORIGIN      
        1 msitsdevnf lvyrylqesg fshsaftfgi eshisqsnin gtlvppaali silqkglqyv
       61 eaeisinedg tvfdgrpies lslidavmpd vvqtrqqafr eklaqqqasa aaaaaataat
      121 agatttavsq qntpkngeat vngeengaha innhskpmei dgdveippnk atvlrghese
      181 vficawnpvs dllasgsgds tariwnlnen snssstqlvl rhciregghd vpsnkdvtsl
      241 dwnsdgtlla tgsydgfari wtedgnlast lgqhkgpifa lkwnkkgnyi lsagvdktti
      301 iwdahtgeak qqfpfhsapa ldvdwqnntt fascstdmci hvcrlgcdrp vktfqghtne
      361 vnaikwdpsg mllascsddm tlkiwsmkqd tcvhdlqahs keiytikwsp tgpgtsnpna
      421 nimlasasfd stvrlwdvdr gvcihtltkh qepvysvafs pdgkylasgs fdkcvhiwnt
      481 qsgtlvhsyr gtggifevcw nargdkvgas asdgsvcvld lrk
//
LOCUS       XP_053934599             523 aa            linear   VRT 09-MAR-2023
DEFINITION  F-box-like/WD repeat-containing protein TBL1X [Cuculus canorus].
ACCESSION   XP_053934599
VERSION     XP_053934599.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078624.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..523
                     /product="F-box-like/WD repeat-containing protein TBL1X"
                     /calculated_mol_wt=56439
     Region          7..31
                     /region_name="LisH"
                     /note="pfam08513"
                     /db_xref="CDD:462501"
     Region          173..479
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cd00200"
                     /db_xref="CDD:238121"
     Site            order(177,195,199,205..206,228..229,251,255,261,273..274,
                     291,296,302..303,316,332,337,343..344,356..357,375,379,
                     385..386,398..399,425,430,436..437,449..450,468,472,
                     478..479)
                     /site_type="active"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     Region          181..228
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          237..273
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          279..315
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          320..355
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          362..397
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          403..448
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <453..523
                     /region_name="8prop_heme_binding_protein"
                     /note="eight-bladed beta-propeller heme-binding domain in
                     cytochrome cd1 and similar proteins; cl49617"
                     /db_xref="CDD:483957"
     Region          454..492
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          456..490
                     /region_name="propeller blade"
                     /note="propeller blade [structural motif]"
                     /db_xref="CDD:467720"
     Region          495..518
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..523
                     /gene="TBL1X"
                     /coded_by="XM_054078624.1:252..1823"
                     /db_xref="GeneID:104054880"
ORIGIN      
        1 msitsdevnf lvyrylqesg fshsaftfgi eshisqsnin gtlvppaali silqkglqyv
       61 eaeisinedg tvfdgrpies lslidavmpd vvqtrqqafr eklaqqqasa aaaaaataat
      121 agatttavsq qntpkngeat vngeengaha innhskpmei dgdveippnk atvlrghese
      181 vficawnpvs dllasgsgds tariwnlnen snssstqlvl rhciregghd vpsnkdvtsl
      241 dwnsdgtlla tgsydgfari wtedgnlast lgqhkgpifa lkwnkkgnyi lsagvdktti
      301 iwdahtgeak qqfpfhsapa ldvdwqnntt fascstdmci hvcrlgcdrp vktfqghtne
      361 vnaikwdpsg mllascsddm tlkiwsmkqd tcvhdlqahs keiytikwsp tgpgtsnpna
      421 nimlasasfd stvrlwdvdr gvcihtltkh qepvysvafs pdgkylasgs fdkcvhiwnt
      481 qsgtlvhsyr gtggifevcw nargdkvgas asdgsvcvld lrk
//
LOCUS       XP_053934608             523 aa            linear   VRT 09-MAR-2023
DEFINITION  F-box-like/WD repeat-containing protein TBL1X [Cuculus canorus].
ACCESSION   XP_053934608
VERSION     XP_053934608.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078633.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..523
                     /product="F-box-like/WD repeat-containing protein TBL1X"
                     /calculated_mol_wt=56439
     Region          7..31
                     /region_name="LisH"
                     /note="pfam08513"
                     /db_xref="CDD:462501"
     Region          173..479
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cd00200"
                     /db_xref="CDD:238121"
     Site            order(177,195,199,205..206,228..229,251,255,261,273..274,
                     291,296,302..303,316,332,337,343..344,356..357,375,379,
                     385..386,398..399,425,430,436..437,449..450,468,472,
                     478..479)
                     /site_type="active"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     Region          181..228
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          237..273
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          279..315
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          320..355
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          362..397
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          403..448
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <453..523
                     /region_name="8prop_heme_binding_protein"
                     /note="eight-bladed beta-propeller heme-binding domain in
                     cytochrome cd1 and similar proteins; cl49617"
                     /db_xref="CDD:483957"
     Region          454..492
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          456..490
                     /region_name="propeller blade"
                     /note="propeller blade [structural motif]"
                     /db_xref="CDD:467720"
     Region          495..518
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..523
                     /gene="TBL1X"
                     /coded_by="XM_054078633.1:382..1953"
                     /db_xref="GeneID:104054880"
ORIGIN      
        1 msitsdevnf lvyrylqesg fshsaftfgi eshisqsnin gtlvppaali silqkglqyv
       61 eaeisinedg tvfdgrpies lslidavmpd vvqtrqqafr eklaqqqasa aaaaaataat
      121 agatttavsq qntpkngeat vngeengaha innhskpmei dgdveippnk atvlrghese
      181 vficawnpvs dllasgsgds tariwnlnen snssstqlvl rhciregghd vpsnkdvtsl
      241 dwnsdgtlla tgsydgfari wtedgnlast lgqhkgpifa lkwnkkgnyi lsagvdktti
      301 iwdahtgeak qqfpfhsapa ldvdwqnntt fascstdmci hvcrlgcdrp vktfqghtne
      361 vnaikwdpsg mllascsddm tlkiwsmkqd tcvhdlqahs keiytikwsp tgpgtsnpna
      421 nimlasasfd stvrlwdvdr gvcihtltkh qepvysvafs pdgkylasgs fdkcvhiwnt
      481 qsgtlvhsyr gtggifevcw nargdkvgas asdgsvcvld lrk
//
LOCUS       XP_053934621             430 aa            linear   VRT 09-MAR-2023
DEFINITION  D(3) dopamine receptor [Cuculus canorus].
ACCESSION   XP_053934621
VERSION     XP_053934621.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078646.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..430
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..430
                     /product="D(3) dopamine receptor"
                     /calculated_mol_wt=48193
     Region          39..424
                     /region_name="7tmA_D3_dopamine_R"
                     /note="D3 subtype of the D2-like family of dopamine
                     receptors, member of the class A family of
                     seven-transmembrane G protein-coupled receptors; cd15310"
                     /db_xref="CDD:320436"
     Region          40..66
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320436"
     Region          73..96
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320436"
     Region          112..142
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320436"
     Site            order(115,119..120,123,198,201..202,375..376,379,395,399,
                     403)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:320436"
     Region          159..177
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320436"
     Region          194..219
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320436"
     Region          352..382
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320436"
     Region          392..417
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320436"
     CDS             1..430
                     /gene="DRD3"
                     /coded_by="XM_054078646.1:81..1373"
                     /db_xref="GeneID:104055797"
ORIGIN      
        1 mggmlmalft rtssypnitd pipcgadntt epdlphshay yalcycilil aiifgnvlvc
       61 lavlkertlq tttnylvvsl avadllvatl vmpwvvylev tggvwtfsri ccdifvtmdv
      121 mmctasilnl caisidryta vvkpvqyqyn tgqsscrrvs lmiaivwmla favscpllfg
      181 fnttgdpsvc sisnpifiiy sslvsfylpf mvtlllyvri ylvlrqrqkk rtltrqgsys
      241 tstkmsyvhk ehmekkalpn kcqgtfppcl plkcsgqqms tkrklltvfs lqryrsfchd
      301 aaltrtpgtt qhnrlgerrk gmkpelevrs lsggrtvssl klahqqprli qlrerkatqm
      361 laivlgafiv cwlpfflihi lnahcpschv ppglysastw lgyvnsalnp iiyttfntdf
      421 rkaflkilcc
//
LOCUS       XP_053934633             430 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat, SAM and basic leucine zipper domain-containing
            protein 1 [Cuculus canorus].
ACCESSION   XP_053934633
VERSION     XP_053934633.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078658.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..430
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..430
                     /product="ankyrin repeat, SAM and basic leucine zipper
                     domain-containing protein 1"
                     /calculated_mol_wt=48203
     Region          4..204
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          9..36
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(38,40,44..45,48..50,52..53,57,60,106,108,110,
                     114..115,118..120,122..123,127,130,139,141,143,147..148,
                     151..153,155..156,160,163)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          38..106
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          108..139
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          141..171
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          228..291
                     /region_name="SAM_ASZ1"
                     /note="SAM domain of ASZ1 subfamily; cd09521"
                     /db_xref="CDD:188920"
     CDS             1..430
                     /gene="ASZ1"
                     /coded_by="XM_054078658.1:116..1408"
                     /db_xref="GeneID:104064338"
ORIGIN      
        1 mlqedkneal kkalvrsdvq lieellnsgi niestfqfgw tplmyaasma dfavvrllld
       61 rganasfeid kytvlmaact aisseenilk tvelllsrna dpnlscrrqm tplmyaakkg
      121 ypkvvallva ngshinaqde ngysaliwaa qlghknvvfk llelgadknl qtkdektaae
      181 laklnrhlei ysllslaanh lqgrycemmk qeaiyslasa vpdqrtgsys afddvevflh
      241 gvglehivgl lkekdvtlrq llmmqkddli eigitnpgdq qklldvtnel qveerrigdl
      301 sevmklelse devltflrdl nkecskltia vqtankhflk nshkmvmlqw aptesfievy
      361 kelvcsienl rgevmklkdl mekqeqkndp sqvklpdkah slenrlvkmg avallgfvly
      421 fgtklvvkkt
//
LOCUS       XP_053934653             773 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SOX-5 isoform X1 [Cuculus canorus].
ACCESSION   XP_053934653
VERSION     XP_053934653.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078678.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..773
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..773
                     /product="transcription factor SOX-5 isoform X1"
                     /calculated_mol_wt=84996
     Region          564..641
                     /region_name="HMG-box_EGL13-like"
                     /note="high mobility group (HMG)-box found in
                     Caenorhabditis elegans protein egg laying defective 13
                     (EGL-13) and similar proteins; cd22042"
                     /db_xref="CDD:438848"
     Site            order(565,567..568,570..571,573..574,578,581,585,592..594,
                     597..598,601,604..605,623,633,635..638)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438848"
     CDS             1..773
                     /gene="SOX5"
                     /coded_by="XM_054078678.1:80..2401"
                     /db_xref="GeneID:104059694"
ORIGIN      
        1 mltdpdlpqe fermsskrpa spygeadgev amvtsrqkvg eeesdglpaf hlplhvsfpn
       61 kphseefqpv slltqencgr rtptsqhntm evdgnkvmss faphnsstsp lkaeeggrqs
      121 geslsstalg tperrkgsla dvvdtlkqrk meeliknepe etpsieklls kdwkdkllam
      181 gsgnfgeikg tpeslaeker qlmgminqlt slreqllaah deqkklaasq iekqrqqmel
      241 akqqqeqiar qqqqllqqqh kinllqqqiq qvqgqlpplm ipvfppdqrt laaaaqqgfl
      301 lppgfsykag csdpypvqli pttmaaaaaa tpglgplqlq qlyaaqlaam qvspggkipg
      361 ipqgnlgaav sptsihtdks tnspppkskd evaqplnlsa kpktsdgksp tsptsphmpt
      421 lrinsgassl kssvpatlts psarsntidi lssitssgyl ndhdavtkai qearqmkeql
      481 rreqqvldgk vavvnslgln ncrtekdktt letltqqlav kqsedgkfsh ammdfnmsgd
      541 sdgsagvses riyresrgrg snephikrpm nafmvwakde rrkilqafpd mhnsniskil
      601 gsrwkamtnl ekqpyyeeqa rlskqhleky pdykykprpk rtclvdgkkl rigeykaimr
      661 nrrqemrqyf nvgqqaqipi atagvvypga iamagmpsph lpsehssvss spepgmpviq
      721 stygikgeep hikeemqtdd vngeiydeyd eeeddpdady gsdsenhiag qan
//
LOCUS       XP_053934662             772 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SOX-5 isoform X2 [Cuculus canorus].
ACCESSION   XP_053934662
VERSION     XP_053934662.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078687.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..772
                     /product="transcription factor SOX-5 isoform X2"
                     /calculated_mol_wt=84868
     Region          563..640
                     /region_name="HMG-box_EGL13-like"
                     /note="high mobility group (HMG)-box found in
                     Caenorhabditis elegans protein egg laying defective 13
                     (EGL-13) and similar proteins; cd22042"
                     /db_xref="CDD:438848"
     Site            order(564,566..567,569..570,572..573,577,580,584,591..593,
                     596..597,600,603..604,622,632,634..637)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438848"
     CDS             1..772
                     /gene="SOX5"
                     /coded_by="XM_054078687.1:97..2415"
                     /db_xref="GeneID:104059694"
ORIGIN      
        1 mltdpdlpqe fermsskrpa spygeadgev amvtsrqkvg eeesdglpaf hlplhvsfpn
       61 kphseefqpv slltqencgr rtptsqhntm evdgnkvmss faphnsstsp lkaeeggrqs
      121 geslsstalg tperrkgsla dvvdtlkqrk meeliknepe etpsieklls kdwkdkllam
      181 gsgnfgeikg tpeslaeker qlmgminqlt slreqllaah deqkklaasq iekqrqqmel
      241 akqqqeqiar qqqqllqqqh kinllqqqiq vqgqlpplmi pvfppdqrtl aaaaqqgfll
      301 ppgfsykagc sdpypvqlip ttmaaaaaat pglgplqlqq lyaaqlaamq vspggkipgi
      361 pqgnlgaavs ptsihtdkst nspppkskde vaqplnlsak pktsdgkspt sptsphmptl
      421 rinsgasslk ssvpatltsp sarsntidil ssitssgyln dhdavtkaiq earqmkeqlr
      481 reqqvldgkv avvnslglnn crtekdkttl etltqqlavk qsedgkfsha mmdfnmsgds
      541 dgsagvsesr iyresrgrgs nephikrpmn afmvwakder rkilqafpdm hnsniskilg
      601 srwkamtnle kqpyyeeqar lskqhlekyp dykykprpkr tclvdgkklr igeykaimrn
      661 rrqemrqyfn vgqqaqipia tagvvypgai amagmpsphl psehssvsss pepgmpviqs
      721 tygikgeeph ikeemqtddv ngeiydeyde eeddpdadyg sdsenhiagq an
//
LOCUS       XP_053934670             764 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SOX-5 isoform X3 [Cuculus canorus].
ACCESSION   XP_053934670
VERSION     XP_053934670.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078695.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..764
                     /product="transcription factor SOX-5 isoform X3"
                     /calculated_mol_wt=84092
     Region          555..632
                     /region_name="HMG-box_EGL13-like"
                     /note="high mobility group (HMG)-box found in
                     Caenorhabditis elegans protein egg laying defective 13
                     (EGL-13) and similar proteins; cd22042"
                     /db_xref="CDD:438848"
     Site            order(556,558..559,561..562,564..565,569,572,576,583..585,
                     588..589,592,595..596,614,624,626..629)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438848"
     CDS             1..764
                     /gene="SOX5"
                     /coded_by="XM_054078695.1:97..2391"
                     /db_xref="GeneID:104059694"
ORIGIN      
        1 mltdpdlpqe fermsskrpa spygeadgev amvtsrqkvg eeesdglpaf hlplhvsfpn
       61 kphseefqpv slltqencgr rtptsqhntm evdgnkvmss faphnsstsp lkaeeggrqs
      121 geslsstalg tperrkgsla dvvdtlkqrk meeliknepe etpsieklls kdwkdkllam
      181 gsgnfgeikg tpeslaeker qlmgminqlt slreqllaah deqkklaasq iekqrqqmel
      241 akqqqeqiar qqqqllqqqh kinllqqqiq qvqgqlpplm ipvfppdqrt laaaaqqgfl
      301 lppgfsykag csdpypvqli pttmaaaaaa tpglgplqlq qlyaaqlaam qvspggkipg
      361 ipqgnlgaav sptsihtdks tnspppkskd evaqplnlsa kpktsdgksp tsptsphmpt
      421 lrinsgassl kssvpatlts psarsntigy lndhdavtka iqearqmkeq lrreqqvldg
      481 kvavvnslgl nncrtekdkt tletltqqla vkqsedgkfs hammdfnmsg dsdgsagvse
      541 sriyresrgr gsnephikrp mnafmvwakd errkilqafp dmhnsniski lgsrwkamtn
      601 lekqpyyeeq arlskqhlek ypdykykprp krtclvdgkk lrigeykaim rnrrqemrqy
      661 fnvgqqaqip iatagvvypg aiamagmpsp hlpsehssvs sspepgmpvi qstygikgee
      721 phikeemqtd dvngeiydey deeeddpdad ygsdsenhia gqan
//
LOCUS       XP_053934676             763 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SOX-5 isoform X4 [Cuculus canorus].
ACCESSION   XP_053934676
VERSION     XP_053934676.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078701.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..763
                     /product="transcription factor SOX-5 isoform X4"
                     /calculated_mol_wt=83964
     Region          554..631
                     /region_name="HMG-box_EGL13-like"
                     /note="high mobility group (HMG)-box found in
                     Caenorhabditis elegans protein egg laying defective 13
                     (EGL-13) and similar proteins; cd22042"
                     /db_xref="CDD:438848"
     Site            order(555,557..558,560..561,563..564,568,571,575,582..584,
                     587..588,591,594..595,613,623,625..628)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438848"
     CDS             1..763
                     /gene="SOX5"
                     /coded_by="XM_054078701.1:97..2388"
                     /db_xref="GeneID:104059694"
ORIGIN      
        1 mltdpdlpqe fermsskrpa spygeadgev amvtsrqkvg eeesdglpaf hlplhvsfpn
       61 kphseefqpv slltqencgr rtptsqhntm evdgnkvmss faphnsstsp lkaeeggrqs
      121 geslsstalg tperrkgsla dvvdtlkqrk meeliknepe etpsieklls kdwkdkllam
      181 gsgnfgeikg tpeslaeker qlmgminqlt slreqllaah deqkklaasq iekqrqqmel
      241 akqqqeqiar qqqqllqqqh kinllqqqiq vqgqlpplmi pvfppdqrtl aaaaqqgfll
      301 ppgfsykagc sdpypvqlip ttmaaaaaat pglgplqlqq lyaaqlaamq vspggkipgi
      361 pqgnlgaavs ptsihtdkst nspppkskde vaqplnlsak pktsdgkspt sptsphmptl
      421 rinsgasslk ssvpatltsp sarsntigyl ndhdavtkai qearqmkeql rreqqvldgk
      481 vavvnslgln ncrtekdktt letltqqlav kqsedgkfsh ammdfnmsgd sdgsagvses
      541 riyresrgrg snephikrpm nafmvwakde rrkilqafpd mhnsniskil gsrwkamtnl
      601 ekqpyyeeqa rlskqhleky pdykykprpk rtclvdgkkl rigeykaimr nrrqemrqyf
      661 nvgqqaqipi atagvvypga iamagmpsph lpsehssvss spepgmpviq stygikgeep
      721 hikeemqtdd vngeiydeyd eeeddpdady gsdsenhiag qan
//
LOCUS       XP_053934685             762 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SOX-5 isoform X5 [Cuculus canorus].
ACCESSION   XP_053934685
VERSION     XP_053934685.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078710.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..762
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..762
                     /product="transcription factor SOX-5 isoform X5"
                     /calculated_mol_wt=83741
     Region          553..630
                     /region_name="HMG-box_EGL13-like"
                     /note="high mobility group (HMG)-box found in
                     Caenorhabditis elegans protein egg laying defective 13
                     (EGL-13) and similar proteins; cd22042"
                     /db_xref="CDD:438848"
     Site            order(554,556..557,559..560,562..563,567,570,574,581..583,
                     586..587,590,593..594,612,622,624..627)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438848"
     CDS             1..762
                     /gene="SOX5"
                     /coded_by="XM_054078710.1:14..2302"
                     /db_xref="GeneID:104059694"
ORIGIN      
        1 mwmsskrpas pygeadgeva mvtsrqkvge eesdglpafh lplhvsfpnk phseefqpvs
       61 lltqencgrr tptsqhntme vdgnkvmssf aphnsstspl kaeeggrqsg eslsstalgt
      121 perrkgslad vvdtlkqrkm eeliknepee tpsiekllsk dwkdkllamg sgnfgeikgt
      181 peslaekerq lmgminqlts lreqllaahd eqkklaasqi ekqrqqmela kqqqeqiarq
      241 qqqllqqqhk inllqqqiqq vqgqlpplmi pvfppdqrtl aaaaqqgfll ppgfsykagc
      301 sdpypvqlip ttmaaaaaat pglgplqlqq lyaaqlaamq vspggkipgi pqgnlgaavs
      361 ptsihtdkst nspppkskde vaqplnlsak pktsdgkspt sptsphmptl rinsgasslk
      421 ssvpatltsp sarsntidil ssitssgyln dhdavtkaiq earqmkeqlr reqqvldgkv
      481 avvnslglnn crtekdkttl etltqqlavk qsedgkfsha mmdfnmsgds dgsagvsesr
      541 iyresrgrgs nephikrpmn afmvwakder rkilqafpdm hnsniskilg srwkamtnle
      601 kqpyyeeqar lskqhlekyp dykykprpkr tclvdgkklr igeykaimrn rrqemrqyfn
      661 vgqqaqipia tagvvypgai amagmpsphl psehssvsss pepgmpviqs tygikgeeph
      721 ikeemqtddv ngeiydeyde eeddpdadyg sdsenhiagq an
//
LOCUS       XP_053934694             760 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SOX-5 isoform X6 [Cuculus canorus].
ACCESSION   XP_053934694
VERSION     XP_053934694.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078719.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..760
                     /product="transcription factor SOX-5 isoform X6"
                     /calculated_mol_wt=83423
     Region          551..628
                     /region_name="HMG-box_EGL13-like"
                     /note="high mobility group (HMG)-box found in
                     Caenorhabditis elegans protein egg laying defective 13
                     (EGL-13) and similar proteins; cd22042"
                     /db_xref="CDD:438848"
     Site            order(552,554..555,557..558,560..561,565,568,572,579..581,
                     584..585,588,591..592,610,620,622..625)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438848"
     CDS             1..760
                     /gene="SOX5"
                     /coded_by="XM_054078719.1:402..2684"
                     /db_xref="GeneID:104059694"
ORIGIN      
        1 msskrpaspy geadgevamv tsrqkvgeee sdglpafhlp lhvsfpnkph seefqpvsll
       61 tqencgrrtp tsqhntmevd gnkvmssfap hnsstsplka eeggrqsges lsstalgtpe
      121 rrkgsladvv dtlkqrkmee liknepeetp siekllskdw kdkllamgsg nfgeikgtpe
      181 slaekerqlm gminqltslr eqllaahdeq kklaasqiek qrqqmelakq qqeqiarqqq
      241 qllqqqhkin llqqqiqqvq gqlpplmipv fppdqrtlaa aaqqgfllpp gfsykagcsd
      301 pypvqliptt maaaaaatpg lgplqlqqly aaqlaamqvs pggkipgipq gnlgaavspt
      361 sihtdkstns pppkskdeva qplnlsakpk tsdgksptsp tsphmptlri nsgasslkss
      421 vpatltspsa rsntidilss itssgylndh davtkaiqea rqmkeqlrre qqvldgkvav
      481 vnslglnncr tekdkttlet ltqqlavkqs edgkfshamm dfnmsgdsdg sagvsesriy
      541 resrgrgsne phikrpmnaf mvwakderrk ilqafpdmhn sniskilgsr wkamtnlekq
      601 pyyeeqarls kqhlekypdy kykprpkrtc lvdgkklrig eykaimrnrr qemrqyfnvg
      661 qqaqipiata gvvypgaiam agmpsphlps ehssvssspe pgmpviqsty gikgeephik
      721 eemqtddvng eiydeydeee ddpdadygsd senhiagqan
//
LOCUS       XP_053934702             760 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SOX-5 isoform X6 [Cuculus canorus].
ACCESSION   XP_053934702
VERSION     XP_053934702.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078727.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..760
                     /product="transcription factor SOX-5 isoform X6"
                     /calculated_mol_wt=83423
     Region          551..628
                     /region_name="HMG-box_EGL13-like"
                     /note="high mobility group (HMG)-box found in
                     Caenorhabditis elegans protein egg laying defective 13
                     (EGL-13) and similar proteins; cd22042"
                     /db_xref="CDD:438848"
     Site            order(552,554..555,557..558,560..561,565,568,572,579..581,
                     584..585,588,591..592,610,620,622..625)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438848"
     CDS             1..760
                     /gene="SOX5"
                     /coded_by="XM_054078727.1:329..2611"
                     /db_xref="GeneID:104059694"
ORIGIN      
        1 msskrpaspy geadgevamv tsrqkvgeee sdglpafhlp lhvsfpnkph seefqpvsll
       61 tqencgrrtp tsqhntmevd gnkvmssfap hnsstsplka eeggrqsges lsstalgtpe
      121 rrkgsladvv dtlkqrkmee liknepeetp siekllskdw kdkllamgsg nfgeikgtpe
      181 slaekerqlm gminqltslr eqllaahdeq kklaasqiek qrqqmelakq qqeqiarqqq
      241 qllqqqhkin llqqqiqqvq gqlpplmipv fppdqrtlaa aaqqgfllpp gfsykagcsd
      301 pypvqliptt maaaaaatpg lgplqlqqly aaqlaamqvs pggkipgipq gnlgaavspt
      361 sihtdkstns pppkskdeva qplnlsakpk tsdgksptsp tsphmptlri nsgasslkss
      421 vpatltspsa rsntidilss itssgylndh davtkaiqea rqmkeqlrre qqvldgkvav
      481 vnslglnncr tekdkttlet ltqqlavkqs edgkfshamm dfnmsgdsdg sagvsesriy
      541 resrgrgsne phikrpmnaf mvwakderrk ilqafpdmhn sniskilgsr wkamtnlekq
      601 pyyeeqarls kqhlekypdy kykprpkrtc lvdgkklrig eykaimrnrr qemrqyfnvg
      661 qqaqipiata gvvypgaiam agmpsphlps ehssvssspe pgmpviqsty gikgeephik
      721 eemqtddvng eiydeydeee ddpdadygsd senhiagqan
//
LOCUS       XP_053934711             760 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SOX-5 isoform X6 [Cuculus canorus].
ACCESSION   XP_053934711
VERSION     XP_053934711.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078736.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..760
                     /product="transcription factor SOX-5 isoform X6"
                     /calculated_mol_wt=83423
     Region          551..628
                     /region_name="HMG-box_EGL13-like"
                     /note="high mobility group (HMG)-box found in
                     Caenorhabditis elegans protein egg laying defective 13
                     (EGL-13) and similar proteins; cd22042"
                     /db_xref="CDD:438848"
     Site            order(552,554..555,557..558,560..561,565,568,572,579..581,
                     584..585,588,591..592,610,620,622..625)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438848"
     CDS             1..760
                     /gene="SOX5"
                     /coded_by="XM_054078736.1:396..2678"
                     /db_xref="GeneID:104059694"
ORIGIN      
        1 msskrpaspy geadgevamv tsrqkvgeee sdglpafhlp lhvsfpnkph seefqpvsll
       61 tqencgrrtp tsqhntmevd gnkvmssfap hnsstsplka eeggrqsges lsstalgtpe
      121 rrkgsladvv dtlkqrkmee liknepeetp siekllskdw kdkllamgsg nfgeikgtpe
      181 slaekerqlm gminqltslr eqllaahdeq kklaasqiek qrqqmelakq qqeqiarqqq
      241 qllqqqhkin llqqqiqqvq gqlpplmipv fppdqrtlaa aaqqgfllpp gfsykagcsd
      301 pypvqliptt maaaaaatpg lgplqlqqly aaqlaamqvs pggkipgipq gnlgaavspt
      361 sihtdkstns pppkskdeva qplnlsakpk tsdgksptsp tsphmptlri nsgasslkss
      421 vpatltspsa rsntidilss itssgylndh davtkaiqea rqmkeqlrre qqvldgkvav
      481 vnslglnncr tekdkttlet ltqqlavkqs edgkfshamm dfnmsgdsdg sagvsesriy
      541 resrgrgsne phikrpmnaf mvwakderrk ilqafpdmhn sniskilgsr wkamtnlekq
      601 pyyeeqarls kqhlekypdy kykprpkrtc lvdgkklrig eykaimrnrr qemrqyfnvg
      661 qqaqipiata gvvypgaiam agmpsphlps ehssvssspe pgmpviqsty gikgeephik
      721 eemqtddvng eiydeydeee ddpdadygsd senhiagqan
//
LOCUS       XP_053934721             760 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SOX-5 isoform X6 [Cuculus canorus].
ACCESSION   XP_053934721
VERSION     XP_053934721.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078746.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..760
                     /product="transcription factor SOX-5 isoform X6"
                     /calculated_mol_wt=83423
     Region          551..628
                     /region_name="HMG-box_EGL13-like"
                     /note="high mobility group (HMG)-box found in
                     Caenorhabditis elegans protein egg laying defective 13
                     (EGL-13) and similar proteins; cd22042"
                     /db_xref="CDD:438848"
     Site            order(552,554..555,557..558,560..561,565,568,572,579..581,
                     584..585,588,591..592,610,620,622..625)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438848"
     CDS             1..760
                     /gene="SOX5"
                     /coded_by="XM_054078746.1:467..2749"
                     /db_xref="GeneID:104059694"
ORIGIN      
        1 msskrpaspy geadgevamv tsrqkvgeee sdglpafhlp lhvsfpnkph seefqpvsll
       61 tqencgrrtp tsqhntmevd gnkvmssfap hnsstsplka eeggrqsges lsstalgtpe
      121 rrkgsladvv dtlkqrkmee liknepeetp siekllskdw kdkllamgsg nfgeikgtpe
      181 slaekerqlm gminqltslr eqllaahdeq kklaasqiek qrqqmelakq qqeqiarqqq
      241 qllqqqhkin llqqqiqqvq gqlpplmipv fppdqrtlaa aaqqgfllpp gfsykagcsd
      301 pypvqliptt maaaaaatpg lgplqlqqly aaqlaamqvs pggkipgipq gnlgaavspt
      361 sihtdkstns pppkskdeva qplnlsakpk tsdgksptsp tsphmptlri nsgasslkss
      421 vpatltspsa rsntidilss itssgylndh davtkaiqea rqmkeqlrre qqvldgkvav
      481 vnslglnncr tekdkttlet ltqqlavkqs edgkfshamm dfnmsgdsdg sagvsesriy
      541 resrgrgsne phikrpmnaf mvwakderrk ilqafpdmhn sniskilgsr wkamtnlekq
      601 pyyeeqarls kqhlekypdy kykprpkrtc lvdgkklrig eykaimrnrr qemrqyfnvg
      661 qqaqipiata gvvypgaiam agmpsphlps ehssvssspe pgmpviqsty gikgeephik
      721 eemqtddvng eiydeydeee ddpdadygsd senhiagqan
//
LOCUS       XP_053934729             760 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SOX-5 isoform X6 [Cuculus canorus].
ACCESSION   XP_053934729
VERSION     XP_053934729.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078754.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..760
                     /product="transcription factor SOX-5 isoform X6"
                     /calculated_mol_wt=83423
     Region          551..628
                     /region_name="HMG-box_EGL13-like"
                     /note="high mobility group (HMG)-box found in
                     Caenorhabditis elegans protein egg laying defective 13
                     (EGL-13) and similar proteins; cd22042"
                     /db_xref="CDD:438848"
     Site            order(552,554..555,557..558,560..561,565,568,572,579..581,
                     584..585,588,591..592,610,620,622..625)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438848"
     CDS             1..760
                     /gene="SOX5"
                     /coded_by="XM_054078754.1:295..2577"
                     /db_xref="GeneID:104059694"
ORIGIN      
        1 msskrpaspy geadgevamv tsrqkvgeee sdglpafhlp lhvsfpnkph seefqpvsll
       61 tqencgrrtp tsqhntmevd gnkvmssfap hnsstsplka eeggrqsges lsstalgtpe
      121 rrkgsladvv dtlkqrkmee liknepeetp siekllskdw kdkllamgsg nfgeikgtpe
      181 slaekerqlm gminqltslr eqllaahdeq kklaasqiek qrqqmelakq qqeqiarqqq
      241 qllqqqhkin llqqqiqqvq gqlpplmipv fppdqrtlaa aaqqgfllpp gfsykagcsd
      301 pypvqliptt maaaaaatpg lgplqlqqly aaqlaamqvs pggkipgipq gnlgaavspt
      361 sihtdkstns pppkskdeva qplnlsakpk tsdgksptsp tsphmptlri nsgasslkss
      421 vpatltspsa rsntidilss itssgylndh davtkaiqea rqmkeqlrre qqvldgkvav
      481 vnslglnncr tekdkttlet ltqqlavkqs edgkfshamm dfnmsgdsdg sagvsesriy
      541 resrgrgsne phikrpmnaf mvwakderrk ilqafpdmhn sniskilgsr wkamtnlekq
      601 pyyeeqarls kqhlekypdy kykprpkrtc lvdgkklrig eykaimrnrr qemrqyfnvg
      661 qqaqipiata gvvypgaiam agmpsphlps ehssvssspe pgmpviqsty gikgeephik
      721 eemqtddvng eiydeydeee ddpdadygsd senhiagqan
//
LOCUS       XP_053934738             760 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SOX-5 isoform X6 [Cuculus canorus].
ACCESSION   XP_053934738
VERSION     XP_053934738.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078763.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..760
                     /product="transcription factor SOX-5 isoform X6"
                     /calculated_mol_wt=83423
     Region          551..628
                     /region_name="HMG-box_EGL13-like"
                     /note="high mobility group (HMG)-box found in
                     Caenorhabditis elegans protein egg laying defective 13
                     (EGL-13) and similar proteins; cd22042"
                     /db_xref="CDD:438848"
     Site            order(552,554..555,557..558,560..561,565,568,572,579..581,
                     584..585,588,591..592,610,620,622..625)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438848"
     CDS             1..760
                     /gene="SOX5"
                     /coded_by="XM_054078763.1:241..2523"
                     /db_xref="GeneID:104059694"
ORIGIN      
        1 msskrpaspy geadgevamv tsrqkvgeee sdglpafhlp lhvsfpnkph seefqpvsll
       61 tqencgrrtp tsqhntmevd gnkvmssfap hnsstsplka eeggrqsges lsstalgtpe
      121 rrkgsladvv dtlkqrkmee liknepeetp siekllskdw kdkllamgsg nfgeikgtpe
      181 slaekerqlm gminqltslr eqllaahdeq kklaasqiek qrqqmelakq qqeqiarqqq
      241 qllqqqhkin llqqqiqqvq gqlpplmipv fppdqrtlaa aaqqgfllpp gfsykagcsd
      301 pypvqliptt maaaaaatpg lgplqlqqly aaqlaamqvs pggkipgipq gnlgaavspt
      361 sihtdkstns pppkskdeva qplnlsakpk tsdgksptsp tsphmptlri nsgasslkss
      421 vpatltspsa rsntidilss itssgylndh davtkaiqea rqmkeqlrre qqvldgkvav
      481 vnslglnncr tekdkttlet ltqqlavkqs edgkfshamm dfnmsgdsdg sagvsesriy
      541 resrgrgsne phikrpmnaf mvwakderrk ilqafpdmhn sniskilgsr wkamtnlekq
      601 pyyeeqarls kqhlekypdy kykprpkrtc lvdgkklrig eykaimrnrr qemrqyfnvg
      661 qqaqipiata gvvypgaiam agmpsphlps ehssvssspe pgmpviqsty gikgeephik
      721 eemqtddvng eiydeydeee ddpdadygsd senhiagqan
//
LOCUS       XP_053934747             760 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SOX-5 isoform X6 [Cuculus canorus].
ACCESSION   XP_053934747
VERSION     XP_053934747.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078772.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..760
                     /product="transcription factor SOX-5 isoform X6"
                     /calculated_mol_wt=83423
     Region          551..628
                     /region_name="HMG-box_EGL13-like"
                     /note="high mobility group (HMG)-box found in
                     Caenorhabditis elegans protein egg laying defective 13
                     (EGL-13) and similar proteins; cd22042"
                     /db_xref="CDD:438848"
     Site            order(552,554..555,557..558,560..561,565,568,572,579..581,
                     584..585,588,591..592,610,620,622..625)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438848"
     CDS             1..760
                     /gene="SOX5"
                     /coded_by="XM_054078772.1:140..2422"
                     /db_xref="GeneID:104059694"
ORIGIN      
        1 msskrpaspy geadgevamv tsrqkvgeee sdglpafhlp lhvsfpnkph seefqpvsll
       61 tqencgrrtp tsqhntmevd gnkvmssfap hnsstsplka eeggrqsges lsstalgtpe
      121 rrkgsladvv dtlkqrkmee liknepeetp siekllskdw kdkllamgsg nfgeikgtpe
      181 slaekerqlm gminqltslr eqllaahdeq kklaasqiek qrqqmelakq qqeqiarqqq
      241 qllqqqhkin llqqqiqqvq gqlpplmipv fppdqrtlaa aaqqgfllpp gfsykagcsd
      301 pypvqliptt maaaaaatpg lgplqlqqly aaqlaamqvs pggkipgipq gnlgaavspt
      361 sihtdkstns pppkskdeva qplnlsakpk tsdgksptsp tsphmptlri nsgasslkss
      421 vpatltspsa rsntidilss itssgylndh davtkaiqea rqmkeqlrre qqvldgkvav
      481 vnslglnncr tekdkttlet ltqqlavkqs edgkfshamm dfnmsgdsdg sagvsesriy
      541 resrgrgsne phikrpmnaf mvwakderrk ilqafpdmhn sniskilgsr wkamtnlekq
      601 pyyeeqarls kqhlekypdy kykprpkrtc lvdgkklrig eykaimrnrr qemrqyfnvg
      661 qqaqipiata gvvypgaiam agmpsphlps ehssvssspe pgmpviqsty gikgeephik
      721 eemqtddvng eiydeydeee ddpdadygsd senhiagqan
//
LOCUS       XP_053934753             760 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SOX-5 isoform X6 [Cuculus canorus].
ACCESSION   XP_053934753
VERSION     XP_053934753.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078778.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..760
                     /product="transcription factor SOX-5 isoform X6"
                     /calculated_mol_wt=83423
     Region          551..628
                     /region_name="HMG-box_EGL13-like"
                     /note="high mobility group (HMG)-box found in
                     Caenorhabditis elegans protein egg laying defective 13
                     (EGL-13) and similar proteins; cd22042"
                     /db_xref="CDD:438848"
     Site            order(552,554..555,557..558,560..561,565,568,572,579..581,
                     584..585,588,591..592,610,620,622..625)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438848"
     CDS             1..760
                     /gene="SOX5"
                     /coded_by="XM_054078778.1:183..2465"
                     /db_xref="GeneID:104059694"
ORIGIN      
        1 msskrpaspy geadgevamv tsrqkvgeee sdglpafhlp lhvsfpnkph seefqpvsll
       61 tqencgrrtp tsqhntmevd gnkvmssfap hnsstsplka eeggrqsges lsstalgtpe
      121 rrkgsladvv dtlkqrkmee liknepeetp siekllskdw kdkllamgsg nfgeikgtpe
      181 slaekerqlm gminqltslr eqllaahdeq kklaasqiek qrqqmelakq qqeqiarqqq
      241 qllqqqhkin llqqqiqqvq gqlpplmipv fppdqrtlaa aaqqgfllpp gfsykagcsd
      301 pypvqliptt maaaaaatpg lgplqlqqly aaqlaamqvs pggkipgipq gnlgaavspt
      361 sihtdkstns pppkskdeva qplnlsakpk tsdgksptsp tsphmptlri nsgasslkss
      421 vpatltspsa rsntidilss itssgylndh davtkaiqea rqmkeqlrre qqvldgkvav
      481 vnslglnncr tekdkttlet ltqqlavkqs edgkfshamm dfnmsgdsdg sagvsesriy
      541 resrgrgsne phikrpmnaf mvwakderrk ilqafpdmhn sniskilgsr wkamtnlekq
      601 pyyeeqarls kqhlekypdy kykprpkrtc lvdgkklrig eykaimrnrr qemrqyfnvg
      661 qqaqipiata gvvypgaiam agmpsphlps ehssvssspe pgmpviqsty gikgeephik
      721 eemqtddvng eiydeydeee ddpdadygsd senhiagqan
//
LOCUS       XP_053934759             744 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SOX-5 isoform X7 [Cuculus canorus].
ACCESSION   XP_053934759
VERSION     XP_053934759.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078784.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..744
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..744
                     /product="transcription factor SOX-5 isoform X7"
                     /calculated_mol_wt=81778
     Region          535..612
                     /region_name="HMG-box_EGL13-like"
                     /note="high mobility group (HMG)-box found in
                     Caenorhabditis elegans protein egg laying defective 13
                     (EGL-13) and similar proteins; cd22042"
                     /db_xref="CDD:438848"
     Site            order(536,538..539,541..542,544..545,549,552,556,563..565,
                     568..569,572,575..576,594,604,606..609)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438848"
     CDS             1..744
                     /gene="SOX5"
                     /coded_by="XM_054078784.1:97..2331"
                     /db_xref="GeneID:104059694"
ORIGIN      
        1 mltdpdlpqe fermsskrpa spygeadgev amvtsrqkvg eeesdglpaf hlplhvsfpn
       61 kphseefqpv slltqencgr rtptsqhntm evdgnkvmss faphnsstsp lkaeeggrqs
      121 geslsstalg tperrkgsla dvvdtlkqrk meeliknepe gtpeslaeke rqlmgminql
      181 tslreqllaa hdeqkklaas qiekqrqqme lakqqqeqia rqqqqllqqq hkinllqqqi
      241 qqvqgqlppl mipvfppdqr tlaaaaqqgf llppgfsyka gcsdpypvql ipttmaaaaa
      301 atpglgplql qqlyaaqlaa mqvspggkip gipqgnlgaa vsptsihtdk stnspppksk
      361 devaqplnls akpktsdgks ptsptsphmp tlrinsgass lkssvpatlt spsarsntid
      421 ilssitssgy lndhdavtka iqearqmkeq lrreqqvldg kvavvnslgl nncrtekdkt
      481 tletltqqla vkqsedgkfs hammdfnmsg dsdgsagvse sriyresrgr gsnephikrp
      541 mnafmvwakd errkilqafp dmhnsniski lgsrwkamtn lekqpyyeeq arlskqhlek
      601 ypdykykprp krtclvdgkk lrigeykaim rnrrqemrqy fnvgqqaqip iatagvvypg
      661 aiamagmpsp hlpsehssvs sspepgmpvi qstygikgee phikeemqtd dvngeiydey
      721 deeeddpdad ygsdsenhia gqan
//
LOCUS       XP_053934770             743 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SOX-5 isoform X8 [Cuculus canorus].
ACCESSION   XP_053934770
VERSION     XP_053934770.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078795.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..743
                     /product="transcription factor SOX-5 isoform X8"
                     /calculated_mol_wt=81650
     Region          534..611
                     /region_name="HMG-box_EGL13-like"
                     /note="high mobility group (HMG)-box found in
                     Caenorhabditis elegans protein egg laying defective 13
                     (EGL-13) and similar proteins; cd22042"
                     /db_xref="CDD:438848"
     Site            order(535,537..538,540..541,543..544,548,551,555,562..564,
                     567..568,571,574..575,593,603,605..608)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438848"
     CDS             1..743
                     /gene="SOX5"
                     /coded_by="XM_054078795.1:97..2328"
                     /db_xref="GeneID:104059694"
ORIGIN      
        1 mltdpdlpqe fermsskrpa spygeadgev amvtsrqkvg eeesdglpaf hlplhvsfpn
       61 kphseefqpv slltqencgr rtptsqhntm evdgnkvmss faphnsstsp lkaeeggrqs
      121 geslsstalg tperrkgsla dvvdtlkqrk meeliknepe gtpeslaeke rqlmgminql
      181 tslreqllaa hdeqkklaas qiekqrqqme lakqqqeqia rqqqqllqqq hkinllqqqi
      241 qvqgqlpplm ipvfppdqrt laaaaqqgfl lppgfsykag csdpypvqli pttmaaaaaa
      301 tpglgplqlq qlyaaqlaam qvspggkipg ipqgnlgaav sptsihtdks tnspppkskd
      361 evaqplnlsa kpktsdgksp tsptsphmpt lrinsgassl kssvpatlts psarsntidi
      421 lssitssgyl ndhdavtkai qearqmkeql rreqqvldgk vavvnslgln ncrtekdktt
      481 letltqqlav kqsedgkfsh ammdfnmsgd sdgsagvses riyresrgrg snephikrpm
      541 nafmvwakde rrkilqafpd mhnsniskil gsrwkamtnl ekqpyyeeqa rlskqhleky
      601 pdykykprpk rtclvdgkkl rigeykaimr nrrqemrqyf nvgqqaqipi atagvvypga
      661 iamagmpsph lpsehssvss spepgmpviq stygikgeep hikeemqtdd vngeiydeyd
      721 eeeddpdady gsdsenhiag qan
//
LOCUS       XP_053934776             738 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SOX-5 isoform X9 [Cuculus canorus].
ACCESSION   XP_053934776
VERSION     XP_053934776.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078801.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..738
                     /product="transcription factor SOX-5 isoform X9"
                     /calculated_mol_wt=81016
     Region          529..606
                     /region_name="HMG-box_EGL13-like"
                     /note="high mobility group (HMG)-box found in
                     Caenorhabditis elegans protein egg laying defective 13
                     (EGL-13) and similar proteins; cd22042"
                     /db_xref="CDD:438848"
     Site            order(530,532..533,535..536,538..539,543,546,550,557..559,
                     562..563,566,569..570,588,598,600..603)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438848"
     CDS             1..738
                     /gene="SOX5"
                     /coded_by="XM_054078801.1:97..2313"
                     /db_xref="GeneID:104059694"
ORIGIN      
        1 mltdpdlpqe fermsskrpa spygeadgev amvtsrqkvg eeesdglpaf hlplhevdgn
       61 kvmssfaphn sstsplkaee ggrqsgesls stalgtperr kgsladvvdt lkqrkmeeli
      121 knepeetpsi ekllskdwkd kllamgsgnf geikgtpesl aekerqlmgm inqltslreq
      181 llaahdeqkk laasqiekqr qqmelakqqq eqiarqqqql lqqqhkinll qqqiqqvqgq
      241 lpplmipvfp pdqrtlaaaa qqgfllppgf sykagcsdpy pvqlipttma aaaaatpglg
      301 plqlqqlyaa qlaamqvspg gkipgipqgn lgaavsptsi htdkstnspp pkskdevaqp
      361 lnlsakpkts dgksptspts phmptlrins gasslkssvp atltspsars ntidilssit
      421 ssgylndhda vtkaiqearq mkeqlrreqq vldgkvavvn slglnncrte kdkttletlt
      481 qqlavkqsed gkfshammdf nmsgdsdgsa gvsesriyre srgrgsneph ikrpmnafmv
      541 wakderrkil qafpdmhnsn iskilgsrwk amtnlekqpy yeeqarlskq hlekypdyky
      601 kprpkrtclv dgkklrigey kaimrnrrqe mrqyfnvgqq aqipiatagv vypgaiamag
      661 mpsphlpseh ssvssspepg mpviqstygi kgeephikee mqtddvngei ydeydeeedd
      721 pdadygsdse nhiagqan
//
LOCUS       XP_053934783             737 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SOX-5 isoform X10 [Cuculus canorus].
ACCESSION   XP_053934783
VERSION     XP_053934783.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078808.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..737
                     /product="transcription factor SOX-5 isoform X10"
                     /calculated_mol_wt=80887
     Region          528..605
                     /region_name="HMG-box_EGL13-like"
                     /note="high mobility group (HMG)-box found in
                     Caenorhabditis elegans protein egg laying defective 13
                     (EGL-13) and similar proteins; cd22042"
                     /db_xref="CDD:438848"
     Site            order(529,531..532,534..535,537..538,542,545,549,556..558,
                     561..562,565,568..569,587,597,599..602)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438848"
     CDS             1..737
                     /gene="SOX5"
                     /coded_by="XM_054078808.1:97..2310"
                     /db_xref="GeneID:104059694"
ORIGIN      
        1 mltdpdlpqe fermsskrpa spygeadgev amvtsrqkvg eeesdglpaf hlplhevdgn
       61 kvmssfaphn sstsplkaee ggrqsgesls stalgtperr kgsladvvdt lkqrkmeeli
      121 knepeetpsi ekllskdwkd kllamgsgnf geikgtpesl aekerqlmgm inqltslreq
      181 llaahdeqkk laasqiekqr qqmelakqqq eqiarqqqql lqqqhkinll qqqiqvqgql
      241 pplmipvfpp dqrtlaaaaq qgfllppgfs ykagcsdpyp vqlipttmaa aaaatpglgp
      301 lqlqqlyaaq laamqvspgg kipgipqgnl gaavsptsih tdkstnsppp kskdevaqpl
      361 nlsakpktsd gksptsptsp hmptlrinsg asslkssvpa tltspsarsn tidilssits
      421 sgylndhdav tkaiqearqm keqlrreqqv ldgkvavvns lglnncrtek dkttletltq
      481 qlavkqsedg kfshammdfn msgdsdgsag vsesriyres rgrgsnephi krpmnafmvw
      541 akderrkilq afpdmhnsni skilgsrwka mtnlekqpyy eeqarlskqh lekypdykyk
      601 prpkrtclvd gkklrigeyk aimrnrrqem rqyfnvgqqa qipiatagvv ypgaiamagm
      661 psphlpsehs svssspepgm pviqstygik geephikeem qtddvngeiy deydeeeddp
      721 dadygsdsen hiagqan
//
LOCUS       XP_053934789             728 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SOX-5 isoform X11 [Cuculus canorus].
ACCESSION   XP_053934789
VERSION     XP_053934789.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078814.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..728
                     /product="transcription factor SOX-5 isoform X11"
                     /calculated_mol_wt=79983
     Region          519..596
                     /region_name="HMG-box_EGL13-like"
                     /note="high mobility group (HMG)-box found in
                     Caenorhabditis elegans protein egg laying defective 13
                     (EGL-13) and similar proteins; cd22042"
                     /db_xref="CDD:438848"
     Site            order(520,522..523,525..526,528..529,533,536,540,547..549,
                     552..553,556,559..560,578,588,590..593)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438848"
     CDS             1..728
                     /gene="SOX5"
                     /coded_by="XM_054078814.1:97..2283"
                     /db_xref="GeneID:104059694"
ORIGIN      
        1 mltdpdlpqe fermsskrpa spygeadgev amvtsrqkvg eeesdglpaf hlplhevdgn
       61 kvmssfaphn sstsplkaee ggrqsgesls stalgtperr kgsladvvdt lkqrkmeeli
      121 knepeetpsi ekllskdwkd kllamgsgnf geikgtpesl aekerqlmgm inqltslreq
      181 llaahdeqkk laasqiekqr qqmelakqqq eqiarqqqql lqqqhkinll qqqiqvqgql
      241 pplmipvfpp dqrtlaaaaq qgfllppgfs ykagcsdpyp vqlipttmaa aaaatpglgp
      301 lqlqqlyaaq laamqvspgg kipgipqgnl gaavsptsih tdkstnsppp kskdevaqpl
      361 nlsakpktsd gksptsptsp hmptlrinsg asslkssvpa tltspsarsn tigylndhda
      421 vtkaiqearq mkeqlrreqq vldgkvavvn slglnncrte kdkttletlt qqlavkqsed
      481 gkfshammdf nmsgdsdgsa gvsesriyre srgrgsneph ikrpmnafmv wakderrkil
      541 qafpdmhnsn iskilgsrwk amtnlekqpy yeeqarlskq hlekypdyky kprpkrtclv
      601 dgkklrigey kaimrnrrqe mrqyfnvgqq aqipiatagv vypgaiamag mpsphlpseh
      661 ssvssspepg mpviqstygi kgeephikee mqtddvngei ydeydeeedd pdadygsdse
      721 nhiagqan
//
LOCUS       XP_053934798             676 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SOX-5 isoform X12 [Cuculus canorus].
ACCESSION   XP_053934798
VERSION     XP_053934798.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078823.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..676
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..676
                     /product="transcription factor SOX-5 isoform X12"
                     /calculated_mol_wt=74207
     Region          467..544
                     /region_name="HMG-box_EGL13-like"
                     /note="high mobility group (HMG)-box found in
                     Caenorhabditis elegans protein egg laying defective 13
                     (EGL-13) and similar proteins; cd22042"
                     /db_xref="CDD:438848"
     Site            order(468,470..471,473..474,476..477,481,484,488,495..497,
                     500..501,504,507..508,526,536,538..541)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438848"
     CDS             1..676
                     /gene="SOX5"
                     /coded_by="XM_054078823.1:135..2165"
                     /db_xref="GeneID:104059694"
ORIGIN      
        1 mssfaphnss tsplkaeegg rqsgeslsst algtperrkg sladvvdtlk qrkmeelikn
       61 epeetpsiek llskdwkdkl lamgsgnfge ikgtpeslae kerqlmgmin qltslreqll
      121 aahdeqkkla asqiekqrqq melakqqqeq iarqqqqllq qqhkinllqq qiqqvqgqlp
      181 plmipvfppd qrtlaaaaqq gfllppgfsy kagcsdpypv qlipttmaaa aaatpglgpl
      241 qlqqlyaaql aamqvspggk ipgipqgnlg aavsptsiht dkstnspppk skdevaqpln
      301 lsakpktsdg ksptsptsph mptlrinsga sslkssvpat ltspsarsnt idilssitss
      361 gylndhdavt kaiqearqmk eqlrreqqvl dgkvavvnsl glnncrtekd kttletltqq
      421 lavkqsedgk fshammdfnm sgdsdgsagv sesriyresr grgsnephik rpmnafmvwa
      481 kderrkilqa fpdmhnsnis kilgsrwkam tnlekqpyye eqarlskqhl ekypdykykp
      541 rpkrtclvdg kklrigeyka imrnrrqemr qyfnvgqqaq ipiatagvvy pgaiamagmp
      601 sphlpsehss vssspepgmp viqstygikg eephikeemq tddvngeiyd eydeeeddpd
      661 adygsdsenh iagqan
//
LOCUS       XP_053934812             712 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier family 15 member 1 [Cuculus canorus].
ACCESSION   XP_053934812
VERSION     XP_053934812.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078837.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..712
                     /product="solute carrier family 15 member 1"
                     /calculated_mol_wt=79238
     Region          33..675
                     /region_name="2A1704"
                     /note="Peptide:H+ symporter (also transports b-lactam
                     antibiotics, the antitumor agent, bestatin, and various
                     protease inhibitors); TIGR00926"
                     /db_xref="CDD:273343"
     CDS             1..712
                     /gene="SLC15A1"
                     /coded_by="XM_054078837.1:51..2189"
                     /db_xref="GeneID:104057308"
ORIGIN      
        1 maaktesqgk spscfgypls iffivinefc erfsyygmra vlvlyfkyfl hwddnlstai
       61 yhtfvalcyl tpilgaliad swlgkfktiv slsvvytigq avmsvssind ltdhnrdgsp
      121 dnvsvhials miglilialg tggikpcvsa fggdqfedhq ekqrtrffsi fylsinagsl
      181 lstiitpilr gqecgihskq rcyplafgvp aalmavalvv fvigsrmykk vqpqgnimvq
      241 vskcigfaik nrfrhrskef pkrehwldwa sekydkrlia qtkmvmkvlf lyiplpmfwa
      301 lfdqqgsrwt lqattmdgnf gaiqiqpdqm qtvnpiliii mvpvvdgviy plikkckinf
      361 tplrkitvgm flaslafvaa alvqvqidkt iphfptagqs qikiinlgad aatvnfepqi
      421 ktvnvtskew tdyitfensq lqslnvisgn ntktllitfp ggnrhtleik ntttgifael
      481 ildnvtskpe egnnlirfin nlpytvnvtm gdtsfgelts lsssdynifq ggrkynvevi
      541 rnsvpcsfts nalgfgsayt ivinecseqt sdvtysedip pntvhmawqi pqyfiltcge
      601 vvfsvtglef sysqapsnmk svlqagwllt vavgniivli vagasklseq waeyvlfaal
      661 llvvciifav mayfytyvdp neieaqldee ekkqvkkden lcdkpveads rm
//
LOCUS       XP_053934819            3336 aa            linear   VRT 09-MAR-2023
DEFINITION  protocadherin-16 isoform X1 [Cuculus canorus].
ACCESSION   XP_053934819
VERSION     XP_053934819.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078844.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3336
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3336
                     /product="protocadherin-16 isoform X1"
                     /calculated_mol_wt=356799
     Region          126..216
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(131..132,185,187,212,214..215)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          226..328
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(231..232,291,293,324,326..327)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          337..435
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(343..344,398,400,431,433..434)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          451..545
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(454..455,508,510,541,543..544)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          553..652
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(560..561,615,617,648,650..651)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          661..759
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(667..668,723,726,755,757..758)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          768..859
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          872..967
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(879..880,931,933,963,965..966)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          977..1071
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(982..983,1034,1036,1067,1069..1070)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1079..1175
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1086..1087,1138,1140,1171,1173..1174)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1184..1278
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1190..1191,1241,1243,1274,1276..1277)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1293..1381
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          1401..1489
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1401..1402,1452,1454,1486,1488..1489)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1498..1600
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1505..1506,1560,1562,1596,1598..1599)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1610..1703
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1614..1615,1667,1669,1700,1702..1703)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1712..1806
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1719..1720,1769,1771,1802,1804..1805)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1816..1910
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1821..1822,1873,1875,1906,1908..1909)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1918..2015
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1925..1926,1977,1979,2011,2013..2014)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2026..2113
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          2128..2221
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2133..2134,2187,2189,2217,2219..2220)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2230..2327
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2236..2237,2290,2292,2323,2325..2326)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2334..2427
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2341..2342,2393,2395,2423,2425..2426)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2436..2529
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2442..2443,2493,2525,2527..2528)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2538..2637
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2544..2545,2600,2602,2633,2635..2636)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2645..2741
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2652..2653,2705,2707,2737,2739..2740)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2751..2853
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2756..2757,2819,2821,2850,2852..2853)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2863..2958
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          3163..3214
                     /region_name="CADH_Y-type_LIR"
                     /note="Cadherin, Y-type LIR-motif; pfam01049"
                     /db_xref="CDD:460041"
     CDS             1..3336
                     /gene="DCHS1"
                     /coded_by="XM_054078844.1:47..10057"
                     /db_xref="GeneID:104056264"
ORIGIN      
        1 mmlrwgsnss lpptaavkrs ygrgkwregg rrsgeetker eqgrvwdgqg rqsscrcrrs
       61 cclpplpppp pmaglkerrr rrspsrlces lameqmkgsa vvllellvll galragqgsa
      121 vlgtlelqid eeqpagtiig disaglppgt saymyfisaq egsgvttdlg identgiiqt
      181 arvldretrd rysfiavtpe gvtvevniqv ndindhapaf pkergtfqip ehtpvgsrfp
      241 ldpafdadsg llntqgyvik ggnvgqafrl etrrgpngvl yldlvvsnvl drenrssysl
      301 lleaydggsp prssqmtldv siqdindnap tfnqsryhtl isenlkpgss ilqvfasdad
      361 egdngdvvye inrrqsdpdq yftidsrtgv iklnkgldye vkkvhelvvq ardravhpev
      421 ttafvtihvr dyndnqptmt iiflsedgsp qisegaqpgq yvarisvsdp dygeysnvnv
      481 tleggdgkfa lttkdniiyl icvdqlldre erdsydlrvt atdsgtpplr aesafvlqvm
      541 dindnpplfd qqeykqsipe vvypgsfvlq vtardkdqgp ngevrysilh grdahsswfa
      601 idpttgiitt aapldyekdp qpqltvlatd rgtpalsssa vvrvalqdvn dnepvfrsnf
      661 ynvslkentp vgtcflqvta tdadsgpfgs isysigsgig tvvptqfsve khsgqlcttq
      721 pldrdegtsa ydftitavdg gglnsmvyvk vfledindnr pvfypldyaa sistqsmpgt
      781 avlrvtahdk deglhgkvty givlgnsppl fslnkdtgvi slswslsgka ntlvqlvvaa
      841 qdggglqaqp narvnisive gtvsppvfeq aqyfftvped tpqgsgvgav raqnppghae
      901 aifysissgd phgyfsidss sgqlrtslal dhesqavlll dvqarsgspp aysntrvkis
      961 vsdvndnaps fpapsdsill peatepgttv ytlqaedrds gangqvsfel asggdgafsv
     1021 erssgavrlv aalryeanaa yalavvardg gvpqlsstft llvhvqaehd ngpifdtlty
     1081 rvevregvpv atrflqvral areaepgglt yqlradgeaa sfgivpesgw lyvksaldre
     1141 trdlyvltvl asaggeprkt gtstvrvsvt dendnsprls eeryfftvae nqspgssvgr
     1201 vtasdrdagq nsrlsyrllq hdpnflihpq tgelstkqsl dreqqsssql lvlvqdggap
     1261 prsatgtiyv tvldendnap sflhvgsgqe llvqvleekp sgllvaslqa kdpdegengt
     1321 isysltgawa erftlhvatg elrtatvlrr sdrpeyiftv tasdrgavph stsaiiriqv
     1381 lpssralprp datvltlqpl egikpgsvig svappdapar gqmtytvvgg ggdgtfvvds
     1441 vtgeiyaare ldyeagaryv lqvsaedtqh gypssrlvvv hihvqdcndq tptfpedpit
     1501 ivvpentqag asvftfqald gdgvgpnsqv rysllhqepp dapfqldgrs glltlrqsld
     1561 reaaasfllv veatdqarnv sqrrssavta rvfvtdendn apvfsspdav sivedqptgf
     1621 valhvwaqdd dlgengrvsy alragnsdgr fhlnpstgal sivralnree vaqhnltvva
     1681 tdhgfprrsa tqllsvlvld vndeaptfek aeyeahvmen lpagspvlqv satdrdlgan
     1741 gevtygglsg glfsihpqtg livttrpldr eeqehhvlmv yardaglppn lskvtvrvtv
     1801 gdendhapll esescslevp enqsrvalyt lratdpdggd ngrleyrvad gdpeqdfsld
     1861 pisgvlsttr aldreraasy slavvvrdgg apprsatmvv svrvldlndn aprfaqasya
     1921 vevpedlpvg alvlqlaahd pdegpngrvs yylgneslga fqvepqsgrl rsaraldrer
     1981 rptysflaka vdsaprepks aavrvtvtvq dvndhapafp hsplalnlsr happkqvvat
     2041 vraedrdaga nasilyrlaa pnaafaidsy tgdiqllrpl gslhprqrtl fvlatdlgqp
     2101 alsstgvvvi hlqeepyrgl rfprgtseva lpenaapgtv vanvqavhtg gssgsitysi
     2161 vsgnekkafl iqpstgaisv rdsssldfea nprlrlvvqa ettasfgfma inlnlqdvnd
     2221 nfprfqlqny vafiwesqsy dspviqvlad dldqgangqv tyainqslpm tglyhidpqs
     2281 gtittaaild reiwsqtrlv vtamdrgtpp lvgsatltvv vmdlndnspt ipfprevrvp
     2341 enallgtqia qltgndvdtg palsyalvdg daaagtfavf rygggialta pldherrssy
     2401 tvtlrasdgr hetqanltil vedvndnapt fsqafyqvlv pehtppgtvv ltvsatdads
     2461 gsngevtfhl tapsqdltid phngtlltlr rveasqsple vvveardggr prrrawaavh
     2521 vvvqdvndhg prfqapryna svaedlrpgt tvltleaada dlarpnaafd ftivggnggn
     2581 afqvesgrar galvllepld feavalynlt vaatdrgvpq rsaavtvlia vrdvndnapv
     2641 farpeyraav sesaapgtev lrvaahdads gprgtvrysi ssgdrrgffr lhessgalsv
     2701 araldreaqa lhalvvratd aaggrfalvp vavevkdvnd nkpyfpvevv sasvrenlpp
     2761 gtllttlrav dadagafgrl ryavleeeea aaepgaadgr raftvnsssg elrsrltfdy
     2821 ertkafrllv satdagnasa tatvrvtvtg edeydpifls pafsfevpeg arrgqsigrv
     2881 latdedegad gvvlyslakp spyfainrtt gaiwlrvdsr apagrakrep remslevmar
     2941 gplpasrsaa arvtidvtht sfglapdlnl llvavaaslg vvvvlaavai vlalirhrrg
     3001 rhkpeadgal grapsgslqk lgreepalpg aehiyhqalp gygaeaggay trggsldpsh
     3061 ssgrgsaeaa eddeirmine yprvasitaa mqehrgpdsg iqqdadqlsd isceptamea
     3121 aqwfkskkga alllpgppps lyreegggsa flgvrcglgv ssapqdyafp edgkpsvegs
     3181 ltaivageee lrgsynwdyl lnwcprfqpl asvfteiarl kdesaarkpp aaakaepkpr
     3241 idppplitsv ahpgaksvpp kpppgrtlaa aprrspishe gsiasaamsp sfspslspla
     3301 arspvvspfg vaqgpaaaai sadraletpd eaelri
//
LOCUS       XP_053934824            3332 aa            linear   VRT 09-MAR-2023
DEFINITION  protocadherin-16 isoform X2 [Cuculus canorus].
ACCESSION   XP_053934824
VERSION     XP_053934824.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078849.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3332
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3332
                     /product="protocadherin-16 isoform X2"
                     /calculated_mol_wt=355969
     Region          122..212
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(127..128,181,183,208,210..211)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          222..324
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(227..228,287,289,320,322..323)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          333..431
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(339..340,394,396,427,429..430)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          447..541
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(450..451,504,506,537,539..540)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          549..648
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(556..557,611,613,644,646..647)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          657..755
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(663..664,719,722,751,753..754)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          764..855
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          868..963
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(875..876,927,929,959,961..962)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          973..1067
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(978..979,1030,1032,1063,1065..1066)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1075..1171
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1082..1083,1134,1136,1167,1169..1170)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1180..1274
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1186..1187,1237,1239,1270,1272..1273)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1289..1377
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          1397..1485
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1397..1398,1448,1450,1482,1484..1485)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1494..1596
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1501..1502,1556,1558,1592,1594..1595)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1606..1699
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1610..1611,1663,1665,1696,1698..1699)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1708..1802
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1715..1716,1765,1767,1798,1800..1801)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1812..1906
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1817..1818,1869,1871,1902,1904..1905)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1914..2011
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1921..1922,1973,1975,2007,2009..2010)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2022..2109
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          2124..2217
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2129..2130,2183,2185,2213,2215..2216)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2226..2323
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2232..2233,2286,2288,2319,2321..2322)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2330..2423
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2337..2338,2389,2391,2419,2421..2422)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2432..2525
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2438..2439,2489,2521,2523..2524)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2534..2633
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2540..2541,2596,2598,2629,2631..2632)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2641..2737
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2648..2649,2701,2703,2733,2735..2736)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2747..2849
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2752..2753,2815,2817,2846,2848..2849)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2859..2954
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          3159..3210
                     /region_name="CADH_Y-type_LIR"
                     /note="Cadherin, Y-type LIR-motif; pfam01049"
                     /db_xref="CDD:460041"
     CDS             1..3332
                     /gene="DCHS1"
                     /coded_by="XM_054078849.1:114..10112"
                     /db_xref="GeneID:104056264"
ORIGIN      
        1 mgrgvvvvff lgtdavlegt epspsfflff ffqggerllf lqeslsscrq prsavkgagt
       61 rapalpgmag lkerrrrrsp srlceslame qmkgsavvll ellvllgalr agqgsavlgt
      121 lelqideeqp agtiigdisa glppgtsaym yfisaqegsg vttdlgiden tgiiqtarvl
      181 dretrdrysf iavtpegvtv evniqvndin dhapafpker gtfqipehtp vgsrfpldpa
      241 fdadsgllnt qgyvikggnv gqafrletrr gpngvlyldl vvsnvldren rssyslllea
      301 ydggspprss qmtldvsiqd indnaptfnq sryhtlisen lkpgssilqv fasdadegdn
      361 gdvvyeinrr qsdpdqyfti dsrtgvikln kgldyevkkv helvvqardr avhpevttaf
      421 vtihvrdynd nqptmtiifl sedgspqise gaqpgqyvar isvsdpdyge ysnvnvtleg
      481 gdgkfalttk dniiylicvd qlldreerds ydlrvtatds gtpplraesa fvlqvmdind
      541 npplfdqqey kqsipevvyp gsfvlqvtar dkdqgpngev rysilhgrda hsswfaidpt
      601 tgiittaapl dyekdpqpql tvlatdrgtp alsssavvrv alqdvndnep vfrsnfynvs
      661 lkentpvgtc flqvtatdad sgpfgsisys igsgigtvvp tqfsvekhsg qlcttqpldr
      721 degtsaydft itavdgggln smvyvkvfle dindnrpvfy pldyaasist qsmpgtavlr
      781 vtahdkdegl hgkvtygivl gnspplfsln kdtgvislsw slsgkantlv qlvvaaqdgg
      841 glqaqpnarv nisivegtvs ppvfeqaqyf ftvpedtpqg sgvgavraqn ppghaeaify
      901 sissgdphgy fsidsssgql rtslaldhes qavllldvqa rsgsppaysn trvkisvsdv
      961 ndnapsfpap sdsillpeat epgttvytlq aedrdsgang qvsfelasgg dgafsverss
     1021 gavrlvaalr yeanaayala vvardggvpq lsstftllvh vqaehdngpi fdtltyrvev
     1081 regvpvatrf lqvralarea epggltyqlr adgeaasfgi vpesgwlyvk saldretrdl
     1141 yvltvlasag geprktgtst vrvsvtdend nsprlseery fftvaenqsp gssvgrvtas
     1201 drdagqnsrl syrllqhdpn flihpqtgel stkqsldreq qsssqllvlv qdggapprsa
     1261 tgtiyvtvld endnapsflh vgsgqellvq vleekpsgll vaslqakdpd egengtisys
     1321 ltgawaerft lhvatgelrt atvlrrsdrp eyiftvtasd rgavphstsa iiriqvlpss
     1381 ralprpdatv ltlqplegik pgsvigsvap pdapargqmt ytvvggggdg tfvvdsvtge
     1441 iyaareldye agaryvlqvs aedtqhgyps srlvvvhihv qdcndqtptf pedpitivvp
     1501 entqagasvf tfqaldgdgv gpnsqvrysl lhqeppdapf qldgrsgllt lrqsldreaa
     1561 asfllvveat dqarnvsqrr ssavtarvfv tdendnapvf sspdavsive dqptgfvalh
     1621 vwaqdddlge ngrvsyalra gnsdgrfhln pstgalsivr alnreevaqh nltvvatdhg
     1681 fprrsatqll svlvldvnde aptfekaeye ahvmenlpag spvlqvsatd rdlgangevt
     1741 ygglsgglfs ihpqtglivt trpldreeqe hhvlmvyard aglppnlskv tvrvtvgden
     1801 dhaplleses cslevpenqs rvalytlrat dpdggdngrl eyrvadgdpe qdfsldpisg
     1861 vlsttraldr eraasyslav vvrdggappr satmvvsvrv ldlndnaprf aqasyavevp
     1921 edlpvgalvl qlaahdpdeg pngrvsyylg neslgafqve pqsgrlrsar aldrerrpty
     1981 sflakavdsa prepksaavr vtvtvqdvnd hapafphspl alnlsrhapp kqvvatvrae
     2041 drdaganasi lyrlaapnaa faidsytgdi qllrplgslh prqrtlfvla tdlgqpalss
     2101 tgvvvihlqe epyrglrfpr gtsevalpen aapgtvvanv qavhtggssg sitysivsgn
     2161 ekkafliqps tgaisvrdss sldfeanprl rlvvqaetta sfgfmainln lqdvndnfpr
     2221 fqlqnyvafi wesqsydspv iqvladdldq gangqvtyai nqslpmtgly hidpqsgtit
     2281 taaildreiw sqtrlvvtam drgtpplvgs atltvvvmdl ndnsptipfp revrvpenal
     2341 lgtqiaqltg ndvdtgpals yalvdgdaaa gtfavfrygg gialtapldh errssytvtl
     2401 rasdgrhetq anltilvedv ndnaptfsqa fyqvlvpeht ppgtvvltvs atdadsgsng
     2461 evtfhltaps qdltidphng tlltlrrvea sqsplevvve ardggrprrr awaavhvvvq
     2521 dvndhgprfq aprynasvae dlrpgttvlt leaadadlar pnaafdftiv ggnggnafqv
     2581 esgrargalv llepldfeav alynltvaat drgvpqrsaa vtvliavrdv ndnapvfarp
     2641 eyraavsesa apgtevlrva ahdadsgprg tvrysissgd rrgffrlhes sgalsvaral
     2701 dreaqalhal vvratdaagg rfalvpvave vkdvndnkpy fpvevvsasv renlppgtll
     2761 ttlravdada gafgrlryav leeeeaaaep gaadgrraft vnsssgelrs rltfdyertk
     2821 afrllvsatd agnasatatv rvtvtgedey dpiflspafs fevpegarrg qsigrvlatd
     2881 edegadgvvl yslakpspyf ainrttgaiw lrvdsrapag rakreprems levmargplp
     2941 asrsaaarvt idvthtsfgl apdlnlllva vaaslgvvvv laavaivlal irhrrgrhkp
     3001 eadgalgrap sgslqklgre epalpgaehi yhqalpgyga eaggaytrgg sldpshssgr
     3061 gsaeaaedde irmineyprv asitaamqeh rgpdsgiqqd adqlsdisce ptameaaqwf
     3121 kskkgaalll pgpppslyre egggsaflgv rcglgvssap qdyafpedgk psvegsltai
     3181 vageeelrgs ynwdyllnwc prfqplasvf teiarlkdes aarkppaaak aepkpridpp
     3241 plitsvahpg aksvppkppp grtlaaaprr spishegsia saamspsfsp slsplaarsp
     3301 vvspfgvaqg paaaaisadr aletpdeael ri
//
LOCUS       XP_053934833            3268 aa            linear   VRT 09-MAR-2023
DEFINITION  protocadherin-16 isoform X3 [Cuculus canorus].
ACCESSION   XP_053934833
VERSION     XP_053934833.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078858.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3268
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3268
                     /product="protocadherin-16 isoform X3"
                     /calculated_mol_wt=349134
     Region          58..148
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(63..64,117,119,144,146..147)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          158..260
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(163..164,223,225,256,258..259)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          269..367
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(275..276,330,332,363,365..366)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          383..477
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(386..387,440,442,473,475..476)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          485..584
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(492..493,547,549,580,582..583)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          593..691
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(599..600,655,658,687,689..690)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          700..791
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          804..899
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(811..812,863,865,895,897..898)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          909..1003
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(914..915,966,968,999,1001..1002)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1011..1107
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1018..1019,1070,1072,1103,1105..1106)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1116..1210
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1122..1123,1173,1175,1206,1208..1209)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1225..1313
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          1333..1421
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1333..1334,1384,1386,1418,1420..1421)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1430..1532
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1437..1438,1492,1494,1528,1530..1531)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1542..1635
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1546..1547,1599,1601,1632,1634..1635)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1644..1738
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1651..1652,1701,1703,1734,1736..1737)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1748..1842
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1753..1754,1805,1807,1838,1840..1841)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1850..1947
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1857..1858,1909,1911,1943,1945..1946)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1958..2045
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          2060..2153
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2065..2066,2119,2121,2149,2151..2152)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2162..2259
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2168..2169,2222,2224,2255,2257..2258)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2266..2359
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2273..2274,2325,2327,2355,2357..2358)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2368..2461
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2374..2375,2425,2457,2459..2460)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2470..2569
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2476..2477,2532,2534,2565,2567..2568)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2577..2673
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2584..2585,2637,2639,2669,2671..2672)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2683..2785
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2688..2689,2751,2753,2782,2784..2785)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2795..2890
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          3095..3146
                     /region_name="CADH_Y-type_LIR"
                     /note="Cadherin, Y-type LIR-motif; pfam01049"
                     /db_xref="CDD:460041"
     CDS             1..3268
                     /gene="DCHS1"
                     /coded_by="XM_054078858.1:70..9876"
                     /db_xref="GeneID:104056264"
ORIGIN      
        1 miseaglker rrrrspsrlc eslameqmkg savvllellv llgalragqg savlgtlelq
       61 ideeqpagti igdisaglpp gtsaymyfis aqegsgvttd lgidentgii qtarvldret
      121 rdrysfiavt pegvtvevni qvndindhap afpkergtfq ipehtpvgsr fpldpafdad
      181 sgllntqgyv ikggnvgqaf rletrrgpng vlyldlvvsn vldrenrssy sllleaydgg
      241 spprssqmtl dvsiqdindn aptfnqsryh tlisenlkpg ssilqvfasd adegdngdvv
      301 yeinrrqsdp dqyftidsrt gviklnkgld yevkkvhelv vqardravhp evttafvtih
      361 vrdyndnqpt mtiiflsedg spqisegaqp gqyvarisvs dpdygeysnv nvtleggdgk
      421 falttkdnii ylicvdqlld reerdsydlr vtatdsgtpp lraesafvlq vmdindnppl
      481 fdqqeykqsi pevvypgsfv lqvtardkdq gpngevrysi lhgrdahssw faidpttgii
      541 ttaapldyek dpqpqltvla tdrgtpalss savvrvalqd vndnepvfrs nfynvslken
      601 tpvgtcflqv tatdadsgpf gsisysigsg igtvvptqfs vekhsgqlct tqpldrdegt
      661 saydftitav dggglnsmvy vkvfledind nrpvfypldy aasistqsmp gtavlrvtah
      721 dkdeglhgkv tygivlgnsp plfslnkdtg vislswslsg kantlvqlvv aaqdggglqa
      781 qpnarvnisi vegtvsppvf eqaqyfftvp edtpqgsgvg avraqnppgh aeaifysiss
      841 gdphgyfsid sssgqlrtsl aldhesqavl lldvqarsgs ppaysntrvk isvsdvndna
      901 psfpapsdsi llpeatepgt tvytlqaedr dsgangqvsf elasggdgaf sverssgavr
      961 lvaalryean aayalavvar dggvpqlsst ftllvhvqae hdngpifdtl tyrvevregv
     1021 pvatrflqvr alareaepgg ltyqlradge aasfgivpes gwlyvksald retrdlyvlt
     1081 vlasaggepr ktgtstvrvs vtdendnspr lseeryfftv aenqspgssv grvtasdrda
     1141 gqnsrlsyrl lqhdpnflih pqtgelstkq sldreqqsss qllvlvqdgg apprsatgti
     1201 yvtvldendn apsflhvgsg qellvqvlee kpsgllvasl qakdpdegen gtisysltga
     1261 waerftlhva tgelrtatvl rrsdrpeyif tvtasdrgav phstsaiiri qvlpssralp
     1321 rpdatvltlq plegikpgsv igsvappdap argqmtytvv ggggdgtfvv dsvtgeiyaa
     1381 reldyeagar yvlqvsaedt qhgypssrlv vvhihvqdcn dqtptfpedp itivvpentq
     1441 agasvftfqa ldgdgvgpns qvrysllhqe ppdapfqldg rsglltlrqs ldreaaasfl
     1501 lvveatdqar nvsqrrssav tarvfvtden dnapvfsspd avsivedqpt gfvalhvwaq
     1561 dddlgengrv syalragnsd grfhlnpstg alsivralnr eevaqhnltv vatdhgfprr
     1621 satqllsvlv ldvndeaptf ekaeyeahvm enlpagspvl qvsatdrdlg angevtyggl
     1681 sgglfsihpq tglivttrpl dreeqehhvl mvyardaglp pnlskvtvrv tvgdendhap
     1741 llesescsle vpenqsrval ytlratdpdg gdngrleyrv adgdpeqdfs ldpisgvlst
     1801 traldreraa syslavvvrd ggapprsatm vvsvrvldln dnaprfaqas yavevpedlp
     1861 vgalvlqlaa hdpdegpngr vsyylgnesl gafqvepqsg rlrsaraldr errptysfla
     1921 kavdsaprep ksaavrvtvt vqdvndhapa fphsplalnl srhappkqvv atvraedrda
     1981 ganasilyrl aapnaafaid sytgdiqllr plgslhprqr tlfvlatdlg qpalsstgvv
     2041 vihlqeepyr glrfprgtse valpenaapg tvvanvqavh tggssgsity sivsgnekka
     2101 fliqpstgai svrdsssldf eanprlrlvv qaettasfgf mainlnlqdv ndnfprfqlq
     2161 nyvafiwesq sydspviqvl addldqgang qvtyainqsl pmtglyhidp qsgtittaai
     2221 ldreiwsqtr lvvtamdrgt pplvgsatlt vvvmdlndns ptipfprevr vpenallgtq
     2281 iaqltgndvd tgpalsyalv dgdaaagtfa vfrygggial tapldherrs sytvtlrasd
     2341 grhetqanlt ilvedvndna ptfsqafyqv lvpehtppgt vvltvsatda dsgsngevtf
     2401 hltapsqdlt idphngtllt lrrveasqsp levvveardg grprrrawaa vhvvvqdvnd
     2461 hgprfqapry nasvaedlrp gttvltleaa dadlarpnaa fdftivggng gnafqvesgr
     2521 argalvllep ldfeavalyn ltvaatdrgv pqrsaavtvl iavrdvndna pvfarpeyra
     2581 avsesaapgt evlrvaahda dsgprgtvry sissgdrrgf frlhessgal svaraldrea
     2641 qalhalvvra tdaaggrfal vpvavevkdv ndnkpyfpve vvsasvrenl ppgtllttlr
     2701 avdadagafg rlryavleee eaaaepgaad grraftvnss sgelrsrltf dyertkafrl
     2761 lvsatdagna satatvrvtv tgedeydpif lspafsfevp egarrgqsig rvlatdedeg
     2821 adgvvlysla kpspyfainr ttgaiwlrvd srapagrakr epremslevm argplpasrs
     2881 aaarvtidvt htsfglapdl nlllvavaas lgvvvvlaav aivlalirhr rgrhkpeadg
     2941 algrapsgsl qklgreepal pgaehiyhqa lpgygaeagg aytrggsldp shssgrgsae
     3001 aaeddeirmi neyprvasit aamqehrgpd sgiqqdadql sdisceptam eaaqwfkskk
     3061 gaalllpgpp pslyreeggg saflgvrcgl gvssapqdya fpedgkpsve gsltaivage
     3121 eelrgsynwd yllnwcprfq plasvfteia rlkdesaark ppaaakaepk pridppplit
     3181 svahpgaksv ppkpppgrtl aaaprrspis hegsiasaam spsfspslsp laarspvvsp
     3241 fgvaqgpaaa aisadralet pdeaelri
//
LOCUS       XP_053934842            3244 aa            linear   VRT 09-MAR-2023
DEFINITION  protocadherin-16 isoform X4 [Cuculus canorus].
ACCESSION   XP_053934842
VERSION     XP_053934842.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078867.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3244
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3244
                     /product="protocadherin-16 isoform X4"
                     /calculated_mol_wt=346350
     Region          34..124
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(39..40,93,95,120,122..123)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          134..236
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(139..140,199,201,232,234..235)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          245..343
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(251..252,306,308,339,341..342)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          359..453
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(362..363,416,418,449,451..452)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          461..560
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(468..469,523,525,556,558..559)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          569..667
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(575..576,631,634,663,665..666)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          676..767
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          780..875
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(787..788,839,841,871,873..874)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          885..979
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(890..891,942,944,975,977..978)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          987..1083
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(994..995,1046,1048,1079,1081..1082)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1092..1186
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1098..1099,1149,1151,1182,1184..1185)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1201..1289
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          1309..1397
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1309..1310,1360,1362,1394,1396..1397)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1406..1508
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1413..1414,1468,1470,1504,1506..1507)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1518..1611
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1522..1523,1575,1577,1608,1610..1611)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1620..1714
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1627..1628,1677,1679,1710,1712..1713)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1724..1818
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1729..1730,1781,1783,1814,1816..1817)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1826..1923
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1833..1834,1885,1887,1919,1921..1922)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1934..2021
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          2036..2129
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2041..2042,2095,2097,2125,2127..2128)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2138..2235
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2144..2145,2198,2200,2231,2233..2234)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2242..2335
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2249..2250,2301,2303,2331,2333..2334)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2344..2437
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2350..2351,2401,2433,2435..2436)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2446..2545
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2452..2453,2508,2510,2541,2543..2544)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2553..2649
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2560..2561,2613,2615,2645,2647..2648)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2659..2761
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2664..2665,2727,2729,2758,2760..2761)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2771..2866
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          3071..3122
                     /region_name="CADH_Y-type_LIR"
                     /note="Cadherin, Y-type LIR-motif; pfam01049"
                     /db_xref="CDD:460041"
     CDS             1..3244
                     /gene="DCHS1"
                     /coded_by="XM_054078867.1:459..10193"
                     /db_xref="GeneID:104056264"
ORIGIN      
        1 meqmkgsavv llellvllga lragqgsavl gtlelqidee qpagtiigdi saglppgtsa
       61 ymyfisaqeg sgvttdlgid entgiiqtar vldretrdry sfiavtpegv tvevniqvnd
      121 indhapafpk ergtfqipeh tpvgsrfpld pafdadsgll ntqgyvikgg nvgqafrlet
      181 rrgpngvlyl dlvvsnvldr enrssyslll eaydggsppr ssqmtldvsi qdindnaptf
      241 nqsryhtlis enlkpgssil qvfasdadeg dngdvvyein rrqsdpdqyf tidsrtgvik
      301 lnkgldyevk kvhelvvqar dravhpevtt afvtihvrdy ndnqptmtii flsedgspqi
      361 segaqpgqyv arisvsdpdy geysnvnvtl eggdgkfalt tkdniiylic vdqlldreer
      421 dsydlrvtat dsgtpplrae safvlqvmdi ndnpplfdqq eykqsipevv ypgsfvlqvt
      481 ardkdqgpng evrysilhgr dahsswfaid pttgiittaa pldyekdpqp qltvlatdrg
      541 tpalsssavv rvalqdvndn epvfrsnfyn vslkentpvg tcflqvtatd adsgpfgsis
      601 ysigsgigtv vptqfsvekh sgqlcttqpl drdegtsayd ftitavdggg lnsmvyvkvf
      661 ledindnrpv fypldyaasi stqsmpgtav lrvtahdkde glhgkvtygi vlgnspplfs
      721 lnkdtgvisl swslsgkant lvqlvvaaqd ggglqaqpna rvnisivegt vsppvfeqaq
      781 yfftvpedtp qgsgvgavra qnppghaeai fysissgdph gyfsidsssg qlrtslaldh
      841 esqavllldv qarsgsppay sntrvkisvs dvndnapsfp apsdsillpe atepgttvyt
      901 lqaedrdsga ngqvsfelas ggdgafsver ssgavrlvaa lryeanaaya lavvardggv
      961 pqlsstftll vhvqaehdng pifdtltyrv evregvpvat rflqvralar eaepggltyq
     1021 lradgeaasf givpesgwly vksaldretr dlyvltvlas aggeprktgt stvrvsvtde
     1081 ndnsprlsee ryfftvaenq spgssvgrvt asdrdagqns rlsyrllqhd pnflihpqtg
     1141 elstkqsldr eqqsssqllv lvqdggappr satgtiyvtv ldendnapsf lhvgsgqell
     1201 vqvleekpsg llvaslqakd pdegengtis ysltgawaer ftlhvatgel rtatvlrrsd
     1261 rpeyiftvta sdrgavphst saiiriqvlp ssralprpda tvltlqpleg ikpgsvigsv
     1321 appdapargq mtytvvgggg dgtfvvdsvt geiyaareld yeagaryvlq vsaedtqhgy
     1381 pssrlvvvhi hvqdcndqtp tfpedpitiv vpentqagas vftfqaldgd gvgpnsqvry
     1441 sllhqeppda pfqldgrsgl ltlrqsldre aaasfllvve atdqarnvsq rrssavtarv
     1501 fvtdendnap vfsspdavsi vedqptgfva lhvwaqdddl gengrvsyal ragnsdgrfh
     1561 lnpstgalsi vralnreeva qhnltvvatd hgfprrsatq llsvlvldvn deaptfekae
     1621 yeahvmenlp agspvlqvsa tdrdlgange vtygglsggl fsihpqtgli vttrpldree
     1681 qehhvlmvya rdaglppnls kvtvrvtvgd endhaplles escslevpen qsrvalytlr
     1741 atdpdggdng rleyrvadgd peqdfsldpi sgvlsttral dreraasysl avvvrdggap
     1801 prsatmvvsv rvldlndnap rfaqasyave vpedlpvgal vlqlaahdpd egpngrvsyy
     1861 lgneslgafq vepqsgrlrs araldrerrp tysflakavd saprepksaa vrvtvtvqdv
     1921 ndhapafphs plalnlsrha ppkqvvatvr aedrdagana silyrlaapn aafaidsytg
     1981 diqllrplgs lhprqrtlfv latdlgqpal sstgvvvihl qeepyrglrf prgtsevalp
     2041 enaapgtvva nvqavhtggs sgsitysivs gnekkafliq pstgaisvrd sssldfeanp
     2101 rlrlvvqaet tasfgfmain lnlqdvndnf prfqlqnyva fiwesqsyds pviqvladdl
     2161 dqgangqvty ainqslpmtg lyhidpqsgt ittaaildre iwsqtrlvvt amdrgtpplv
     2221 gsatltvvvm dlndnsptip fprevrvpen allgtqiaql tgndvdtgpa lsyalvdgda
     2281 aagtfavfry gggialtapl dherrssytv tlrasdgrhe tqanltilve dvndnaptfs
     2341 qafyqvlvpe htppgtvvlt vsatdadsgs ngevtfhlta psqdltidph ngtlltlrrv
     2401 easqsplevv veardggrpr rrawaavhvv vqdvndhgpr fqaprynasv aedlrpgttv
     2461 ltleaadadl arpnaafdft ivggnggnaf qvesgrarga lvllepldfe avalynltva
     2521 atdrgvpqrs aavtvliavr dvndnapvfa rpeyraavse saapgtevlr vaahdadsgp
     2581 rgtvrysiss gdrrgffrlh essgalsvar aldreaqalh alvvratdaa ggrfalvpva
     2641 vevkdvndnk pyfpvevvsa svrenlppgt llttlravda dagafgrlry avleeeeaaa
     2701 epgaadgrra ftvnsssgel rsrltfdyer tkafrllvsa tdagnasata tvrvtvtged
     2761 eydpiflspa fsfevpegar rgqsigrvla tdedegadgv vlyslakpsp yfainrttga
     2821 iwlrvdsrap agrakrepre mslevmargp lpasrsaaar vtidvthtsf glapdlnlll
     2881 vavaaslgvv vvlaavaivl alirhrrgrh kpeadgalgr apsgslqklg reepalpgae
     2941 hiyhqalpgy gaeaggaytr ggsldpshss grgsaeaaed deirmineyp rvasitaamq
     3001 ehrgpdsgiq qdadqlsdis ceptameaaq wfkskkgaal llpgpppsly reegggsafl
     3061 gvrcglgvss apqdyafped gkpsvegslt aivageeelr gsynwdylln wcprfqplas
     3121 vfteiarlkd esaarkppaa akaepkprid ppplitsvah pgaksvppkp ppgrtlaaap
     3181 rrspishegs iasaamspsf spslsplaar spvvspfgva qgpaaaaisa draletpdea
     3241 elri
//
LOCUS       XP_053934850            3244 aa            linear   VRT 09-MAR-2023
DEFINITION  protocadherin-16 isoform X4 [Cuculus canorus].
ACCESSION   XP_053934850
VERSION     XP_053934850.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078875.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3244
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3244
                     /product="protocadherin-16 isoform X4"
                     /calculated_mol_wt=346350
     Region          34..124
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(39..40,93,95,120,122..123)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          134..236
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(139..140,199,201,232,234..235)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          245..343
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(251..252,306,308,339,341..342)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          359..453
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(362..363,416,418,449,451..452)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          461..560
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(468..469,523,525,556,558..559)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          569..667
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(575..576,631,634,663,665..666)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          676..767
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          780..875
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(787..788,839,841,871,873..874)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          885..979
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(890..891,942,944,975,977..978)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          987..1083
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(994..995,1046,1048,1079,1081..1082)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1092..1186
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1098..1099,1149,1151,1182,1184..1185)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1201..1289
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          1309..1397
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1309..1310,1360,1362,1394,1396..1397)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1406..1508
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1413..1414,1468,1470,1504,1506..1507)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1518..1611
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1522..1523,1575,1577,1608,1610..1611)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1620..1714
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1627..1628,1677,1679,1710,1712..1713)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1724..1818
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1729..1730,1781,1783,1814,1816..1817)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1826..1923
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1833..1834,1885,1887,1919,1921..1922)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1934..2021
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          2036..2129
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2041..2042,2095,2097,2125,2127..2128)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2138..2235
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2144..2145,2198,2200,2231,2233..2234)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2242..2335
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2249..2250,2301,2303,2331,2333..2334)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2344..2437
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2350..2351,2401,2433,2435..2436)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2446..2545
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2452..2453,2508,2510,2541,2543..2544)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2553..2649
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2560..2561,2613,2615,2645,2647..2648)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2659..2761
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2664..2665,2727,2729,2758,2760..2761)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2771..2866
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          3071..3122
                     /region_name="CADH_Y-type_LIR"
                     /note="Cadherin, Y-type LIR-motif; pfam01049"
                     /db_xref="CDD:460041"
     CDS             1..3244
                     /gene="DCHS1"
                     /coded_by="XM_054078875.1:459..10193"
                     /db_xref="GeneID:104056264"
ORIGIN      
        1 meqmkgsavv llellvllga lragqgsavl gtlelqidee qpagtiigdi saglppgtsa
       61 ymyfisaqeg sgvttdlgid entgiiqtar vldretrdry sfiavtpegv tvevniqvnd
      121 indhapafpk ergtfqipeh tpvgsrfpld pafdadsgll ntqgyvikgg nvgqafrlet
      181 rrgpngvlyl dlvvsnvldr enrssyslll eaydggsppr ssqmtldvsi qdindnaptf
      241 nqsryhtlis enlkpgssil qvfasdadeg dngdvvyein rrqsdpdqyf tidsrtgvik
      301 lnkgldyevk kvhelvvqar dravhpevtt afvtihvrdy ndnqptmtii flsedgspqi
      361 segaqpgqyv arisvsdpdy geysnvnvtl eggdgkfalt tkdniiylic vdqlldreer
      421 dsydlrvtat dsgtpplrae safvlqvmdi ndnpplfdqq eykqsipevv ypgsfvlqvt
      481 ardkdqgpng evrysilhgr dahsswfaid pttgiittaa pldyekdpqp qltvlatdrg
      541 tpalsssavv rvalqdvndn epvfrsnfyn vslkentpvg tcflqvtatd adsgpfgsis
      601 ysigsgigtv vptqfsvekh sgqlcttqpl drdegtsayd ftitavdggg lnsmvyvkvf
      661 ledindnrpv fypldyaasi stqsmpgtav lrvtahdkde glhgkvtygi vlgnspplfs
      721 lnkdtgvisl swslsgkant lvqlvvaaqd ggglqaqpna rvnisivegt vsppvfeqaq
      781 yfftvpedtp qgsgvgavra qnppghaeai fysissgdph gyfsidsssg qlrtslaldh
      841 esqavllldv qarsgsppay sntrvkisvs dvndnapsfp apsdsillpe atepgttvyt
      901 lqaedrdsga ngqvsfelas ggdgafsver ssgavrlvaa lryeanaaya lavvardggv
      961 pqlsstftll vhvqaehdng pifdtltyrv evregvpvat rflqvralar eaepggltyq
     1021 lradgeaasf givpesgwly vksaldretr dlyvltvlas aggeprktgt stvrvsvtde
     1081 ndnsprlsee ryfftvaenq spgssvgrvt asdrdagqns rlsyrllqhd pnflihpqtg
     1141 elstkqsldr eqqsssqllv lvqdggappr satgtiyvtv ldendnapsf lhvgsgqell
     1201 vqvleekpsg llvaslqakd pdegengtis ysltgawaer ftlhvatgel rtatvlrrsd
     1261 rpeyiftvta sdrgavphst saiiriqvlp ssralprpda tvltlqpleg ikpgsvigsv
     1321 appdapargq mtytvvgggg dgtfvvdsvt geiyaareld yeagaryvlq vsaedtqhgy
     1381 pssrlvvvhi hvqdcndqtp tfpedpitiv vpentqagas vftfqaldgd gvgpnsqvry
     1441 sllhqeppda pfqldgrsgl ltlrqsldre aaasfllvve atdqarnvsq rrssavtarv
     1501 fvtdendnap vfsspdavsi vedqptgfva lhvwaqdddl gengrvsyal ragnsdgrfh
     1561 lnpstgalsi vralnreeva qhnltvvatd hgfprrsatq llsvlvldvn deaptfekae
     1621 yeahvmenlp agspvlqvsa tdrdlgange vtygglsggl fsihpqtgli vttrpldree
     1681 qehhvlmvya rdaglppnls kvtvrvtvgd endhaplles escslevpen qsrvalytlr
     1741 atdpdggdng rleyrvadgd peqdfsldpi sgvlsttral dreraasysl avvvrdggap
     1801 prsatmvvsv rvldlndnap rfaqasyave vpedlpvgal vlqlaahdpd egpngrvsyy
     1861 lgneslgafq vepqsgrlrs araldrerrp tysflakavd saprepksaa vrvtvtvqdv
     1921 ndhapafphs plalnlsrha ppkqvvatvr aedrdagana silyrlaapn aafaidsytg
     1981 diqllrplgs lhprqrtlfv latdlgqpal sstgvvvihl qeepyrglrf prgtsevalp
     2041 enaapgtvva nvqavhtggs sgsitysivs gnekkafliq pstgaisvrd sssldfeanp
     2101 rlrlvvqaet tasfgfmain lnlqdvndnf prfqlqnyva fiwesqsyds pviqvladdl
     2161 dqgangqvty ainqslpmtg lyhidpqsgt ittaaildre iwsqtrlvvt amdrgtpplv
     2221 gsatltvvvm dlndnsptip fprevrvpen allgtqiaql tgndvdtgpa lsyalvdgda
     2281 aagtfavfry gggialtapl dherrssytv tlrasdgrhe tqanltilve dvndnaptfs
     2341 qafyqvlvpe htppgtvvlt vsatdadsgs ngevtfhlta psqdltidph ngtlltlrrv
     2401 easqsplevv veardggrpr rrawaavhvv vqdvndhgpr fqaprynasv aedlrpgttv
     2461 ltleaadadl arpnaafdft ivggnggnaf qvesgrarga lvllepldfe avalynltva
     2521 atdrgvpqrs aavtvliavr dvndnapvfa rpeyraavse saapgtevlr vaahdadsgp
     2581 rgtvrysiss gdrrgffrlh essgalsvar aldreaqalh alvvratdaa ggrfalvpva
     2641 vevkdvndnk pyfpvevvsa svrenlppgt llttlravda dagafgrlry avleeeeaaa
     2701 epgaadgrra ftvnsssgel rsrltfdyer tkafrllvsa tdagnasata tvrvtvtged
     2761 eydpiflspa fsfevpegar rgqsigrvla tdedegadgv vlyslakpsp yfainrttga
     2821 iwlrvdsrap agrakrepre mslevmargp lpasrsaaar vtidvthtsf glapdlnlll
     2881 vavaaslgvv vvlaavaivl alirhrrgrh kpeadgalgr apsgslqklg reepalpgae
     2941 hiyhqalpgy gaeaggaytr ggsldpshss grgsaeaaed deirmineyp rvasitaamq
     3001 ehrgpdsgiq qdadqlsdis ceptameaaq wfkskkgaal llpgpppsly reegggsafl
     3061 gvrcglgvss apqdyafped gkpsvegslt aivageeelr gsynwdylln wcprfqplas
     3121 vfteiarlkd esaarkppaa akaepkprid ppplitsvah pgaksvppkp ppgrtlaaap
     3181 rrspishegs iasaamspsf spslsplaar spvvspfgva qgpaaaaisa draletpdea
     3241 elri
//
LOCUS       XP_053934861             720 aa            linear   VRT 09-MAR-2023
DEFINITION  tripartite motif-containing protein 3 [Cuculus canorus].
ACCESSION   XP_053934861
VERSION     XP_053934861.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078886.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..720
                     /product="tripartite motif-containing protein 3"
                     /calculated_mol_wt=77282
     Region          11..54
                     /region_name="RING_Ubox"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; cl17238"
                     /db_xref="CDD:473075"
     Site            order(13,16,28,30,33,36,50,53)
                     /site_type="other"
                     /note="cross-brace motif"
                     /db_xref="CDD:438111"
     Region          92..132
                     /region_name="Bbox_SF"
                     /note="B-box-type zinc finger superfamily; cl00034"
                     /db_xref="CDD:469587"
     Region          137..257
                     /region_name="CC_brat-like"
                     /note="coiled-coil (CC) domain of Drosophila brain tumor
                     (brat) and similar proteins; cl29238"
                     /db_xref="CDD:475168"
     Site            order(141,144..145,147..149,152,155,169..170,173,176..177,
                     180..181,184,191..192,195,198..199,202..203,206,216..217,
                     220,224,227..228,231..232,234..235,243,246..247,250,
                     253..254)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467844"
     Region          301..397
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          447..720
                     /region_name="NHL_TRIM2_like"
                     /note="NHL repeat domain of the tripartite
                     motif-containing protein 2 (TRIM2) and related proteins;
                     cd14960"
                     /db_xref="CDD:271330"
     Region          465..504
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271330"
     Region          512..551
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271330"
     Region          554..591
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271330"
     Region          598..639
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271330"
     Region          645..687
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271330"
     Region          690..716
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271330"
     CDS             1..720
                     /gene="TRIM3"
                     /coded_by="XM_054078886.1:61..2223"
                     /db_xref="GeneID:128853493"
ORIGIN      
        1 marrealgav lacgicrerl rspkvlpclh sfcerclqay vpphsltlpc pvcrqtsivp
       61 ergvaalqnn vvlarlvegp peppesppgd glpcpnhegk glefycegce tatcracreg
      121 ehrehrtvpl rdvleqhrga lralcdalra rlpqlsaaaa lvselsqela arraaaaadi
      181 aavfseleat lrlrraqler llddtcgakq qvlqaqleal rqgqeslqss valaeralgr
      241 gsaaevlllr kqvgerlgel aardfpeqpq qnahldcale pdgvrksiln lgalvttdaa
      301 ahktvaageg lrhavvgqpa slsvttkdkd gqlvrsggaa vrfqvtgadg aaveaevqdn
      361 kngtyeltyt praegdlqla valygrpirg spfrvravra cdvpaspddv krrvkspsgg
      421 hvrqkavrrp ssmygsakkk enpiedelif rvgtrgrekg eftnlqgist ssngrivvad
      481 snnqcvqvfs negqfrlrfg vrgrspgqlq rptgvtvdtn gdiiiadydn rwvsifspeg
      541 kfktkigagr lmgpkgvavd rnghiivvdn kaccvcvfqa ngklltkfgs rgtaerqfag
      601 phfvavnnkn eivvtdfhnh svkvysadge flfkfgshge gngqfnaptg vaidangnii
      661 vadwgnsrvq vfdgagsfls yintgadply gpqgvaltpd ghvvvadsgn hcfkayrylq
//
LOCUS       XP_053934870             720 aa            linear   VRT 09-MAR-2023
DEFINITION  tripartite motif-containing protein 3 [Cuculus canorus].
ACCESSION   XP_053934870
VERSION     XP_053934870.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078895.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..720
                     /product="tripartite motif-containing protein 3"
                     /calculated_mol_wt=77282
     Region          11..54
                     /region_name="RING_Ubox"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; cl17238"
                     /db_xref="CDD:473075"
     Site            order(13,16,28,30,33,36,50,53)
                     /site_type="other"
                     /note="cross-brace motif"
                     /db_xref="CDD:438111"
     Region          92..132
                     /region_name="Bbox_SF"
                     /note="B-box-type zinc finger superfamily; cl00034"
                     /db_xref="CDD:469587"
     Region          137..257
                     /region_name="CC_brat-like"
                     /note="coiled-coil (CC) domain of Drosophila brain tumor
                     (brat) and similar proteins; cl29238"
                     /db_xref="CDD:475168"
     Site            order(141,144..145,147..149,152,155,169..170,173,176..177,
                     180..181,184,191..192,195,198..199,202..203,206,216..217,
                     220,224,227..228,231..232,234..235,243,246..247,250,
                     253..254)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467844"
     Region          301..397
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          447..720
                     /region_name="NHL_TRIM2_like"
                     /note="NHL repeat domain of the tripartite
                     motif-containing protein 2 (TRIM2) and related proteins;
                     cd14960"
                     /db_xref="CDD:271330"
     Region          465..504
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271330"
     Region          512..551
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271330"
     Region          554..591
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271330"
     Region          598..639
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271330"
     Region          645..687
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271330"
     Region          690..716
                     /region_name="NHL repeat"
                     /note="NHL repeat [structural motif]"
                     /db_xref="CDD:271330"
     CDS             1..720
                     /gene="TRIM3"
                     /coded_by="XM_054078895.1:33..2195"
                     /db_xref="GeneID:128853493"
ORIGIN      
        1 marrealgav lacgicrerl rspkvlpclh sfcerclqay vpphsltlpc pvcrqtsivp
       61 ergvaalqnn vvlarlvegp peppesppgd glpcpnhegk glefycegce tatcracreg
      121 ehrehrtvpl rdvleqhrga lralcdalra rlpqlsaaaa lvselsqela arraaaaadi
      181 aavfseleat lrlrraqler llddtcgakq qvlqaqleal rqgqeslqss valaeralgr
      241 gsaaevlllr kqvgerlgel aardfpeqpq qnahldcale pdgvrksiln lgalvttdaa
      301 ahktvaageg lrhavvgqpa slsvttkdkd gqlvrsggaa vrfqvtgadg aaveaevqdn
      361 kngtyeltyt praegdlqla valygrpirg spfrvravra cdvpaspddv krrvkspsgg
      421 hvrqkavrrp ssmygsakkk enpiedelif rvgtrgrekg eftnlqgist ssngrivvad
      481 snnqcvqvfs negqfrlrfg vrgrspgqlq rptgvtvdtn gdiiiadydn rwvsifspeg
      541 kfktkigagr lmgpkgvavd rnghiivvdn kaccvcvfqa ngklltkfgs rgtaerqfag
      601 phfvavnnkn eivvtdfhnh svkvysadge flfkfgshge gngqfnaptg vaidangnii
      661 vadwgnsrvq vfdgagsfls yintgadply gpqgvaltpd ghvvvadsgn hcfkayrylq
//
LOCUS       XP_053934882             581 aa            linear   VRT 09-MAR-2023
DEFINITION  tripeptidyl-peptidase 1 [Cuculus canorus].
ACCESSION   XP_053934882
VERSION     XP_053934882.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078907.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..581
                     /product="tripeptidyl-peptidase 1"
                     /calculated_mol_wt=63517
     Region          39..174
                     /region_name="Pro-kuma_activ"
                     /note="Pro-kumamolisin, activation domain; smart00944"
                     /db_xref="CDD:214928"
     Site            order(52,54..55,57,63..64,67,81..82,84,87,168..169,
                     171..172)
                     /site_type="other"
                     /note="peptidase domain interface [polypeptide binding]"
                     /db_xref="CDD:206778"
     Region          207..569
                     /region_name="Peptidases_S53"
                     /note="Peptidase domain in the S53 family; cd04056"
                     /db_xref="CDD:173788"
     Site            order(279,283,331..334,364,366..367,483)
                     /site_type="active"
                     /db_xref="CDD:173788"
     Site            order(279,283,483)
                     /site_type="active"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:173788"
     Site            order(529..530,551,555)
                     /site_type="other"
                     /note="calcium binding site [ion binding]"
                     /db_xref="CDD:173788"
     CDS             1..581
                     /gene="TPP1"
                     /coded_by="XM_054078907.1:114..1859"
                     /db_xref="GeneID:128853496"
ORIGIN      
        1 mgvrgrrwal alcavawsca aallleadqp frvpdgwsha grvpadhsve ltlalrqrgi
       61 arlhrlirtv sdpgspqygr fltleelrrl iqpspgavaa vekwlrssgv eecrsvttrd
      121 flqcrmaasv aerllpgaef hryaqggrsv vrsprpygvp ediaphidfv gglhrfpaer
      181 kvvsrawakk eaewerskga raafhlgvtp silrkrynmt aedvgqlann sqacaqfleq
      241 yfhqadvaef melfgssfrh rssvdrvvgp qgrgkaglea sldveyimst ganistwvfs
      301 nagrhesqep flewllvlsn tsavpwvhsv sygdaedsls rayverlnve fmkaaarglt
      361 vlfasgddgs gcrrepggnh tfrpsfpass pyvttvggts frnpflvtee vtdyisgggf
      421 snvfsmpdyq aaavqqflrs apalppesyf nrggraypdl aalsdnywvv snrvplpwvs
      481 gtsastpvva gmvalindrr lrrglaplgf lnpalyglrr rghrdaiydv trgchvscld
      541 gavqgrgfca gpawdpvtgw gtpnfprlle algpppdaph k
//
LOCUS       XP_053934885             452 aa            linear   VRT 09-MAR-2023
DEFINITION  integrin-linked protein kinase [Cuculus canorus].
ACCESSION   XP_053934885
VERSION     XP_053934885.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078910.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..452
                     /product="integrin-linked protein kinase"
                     /calculated_mol_wt=50965
     Region          <8..156
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(33,35,39..40,43..45,47..48,52,55,64,66,68,72..73,
                     76..78,80..81,85,88,97,99,101,105..106,109..111,113..114,
                     118,121,130)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          33..64
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          66..97
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          99..130
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          197..449
                     /region_name="PK_ILK"
                     /note="Pseudokinase domain of Integrin Linked Kinase;
                     cd14057"
                     /db_xref="CDD:270959"
     Site            order(200,202..204,207,218,220,269..272,279,323,326,339,
                     341)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270959"
     Site            order(225,348..351,361..364,396..399,401..403,406)
                     /site_type="other"
                     /note="Parvin interface [polypeptide binding]"
                     /db_xref="CDD:270959"
     CDS             1..452
                     /gene="ILK"
                     /coded_by="XM_054078910.1:179..1537"
                     /db_xref="GeneID:104065403"
ORIGIN      
        1 mddiftqcrd gnavavrlwl dntendlnqg ddhgfsplhw acregragvv dmlimrgari
       61 nvmnrgddcp lhlaashghr divqkllqfk adinavnehg ntalhyacfw ghdglaedlv
      121 gsgalvgvan kygetpldka kaplrdllke raeklgqslt ripykdtfwk gttrtrprng
      181 tlnklagidf kqlslsqkln enhsgelwkg rwqgndigik mlrirdwttr ksrdfneeyp
      241 klrifshpnv lpvlgacqap paphpiiish wmpygslynv lhegtnfvvd qtqavkfafd
      301 iargmaflht lepliprhhl nsrgvmided mtarismadv kfsfqcpgrm yapawvapea
      361 lqkkpeeinr rsadmwsfav llwelvtrev pfadlsnmei gmkvaleglr ptippgisph
      421 vcklmkicmn edaakrpkfd mivpilekmq ek
//
LOCUS       XP_053934895             375 aa            linear   VRT 09-MAR-2023
DEFINITION  arfaptin-2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053934895
VERSION     XP_053934895.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078920.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..375
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..375
                     /product="arfaptin-2 isoform X1"
                     /calculated_mol_wt=40903
     Region          157..357
                     /region_name="BAR_Arfaptin"
                     /note="The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin;
                     cd07660"
                     /db_xref="CDD:153344"
     Site            order(173..174,180,184,187,190..191,194,197..198,202,
                     204..205,208,211..212,215..216,218..219,222,226,324,
                     328..329,332..333,335..336,343..344,346..347)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:153344"
     Site            order(179,182,185..186,189..190,192..194,196..197,231,234,
                     238,241..242)
                     /site_type="other"
                     /note="Rac binding site [polypeptide binding]"
                     /db_xref="CDD:153344"
     CDS             1..375
                     /gene="ARFIP2"
                     /coded_by="XM_054078920.1:132..1259"
                     /db_xref="GeneID:104054865"
ORIGIN      
        1 msegllgkaa tmeipissng dagslpeddg leqdlqqvmv sgpnlnetni vsggyggtae
       61 giiptgsikg sllpppaprg psvipsaaaa grmaqpdaip gsgllpphpg sgaageeivr
      121 giagekfdiv kkwgintykc tkqllserfg rgsrtvdlel eaqiellret krryecvlql
      181 sralahhfys lvqtqralgd afadlsqkap elqeefgyna etqkllcrng etllgavnff
      241 vssiqtlvhk tmedtlitvk hyesarleyd ayrtdleels agardagalc rmdaaqsqfq
      301 shrdkyerlr advavklkfl eenkvkvmhk qlllfhnavs syfagnqqql eqtlkqfhvr
      361 lkapgaekps wleeq
//
LOCUS       XP_053934900             344 aa            linear   VRT 09-MAR-2023
DEFINITION  arfaptin-2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053934900
VERSION     XP_053934900.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078925.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..344
                     /product="arfaptin-2 isoform X2"
                     /calculated_mol_wt=37958
     Region          126..326
                     /region_name="BAR_Arfaptin"
                     /note="The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin;
                     cd07660"
                     /db_xref="CDD:153344"
     Site            order(142..143,149,153,156,159..160,163,166..167,171,
                     173..174,177,180..181,184..185,187..188,191,195,293,
                     297..298,301..302,304..305,312..313,315..316)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:153344"
     Site            order(148,151,154..155,158..159,161..163,165..166,200,203,
                     207,210..211)
                     /site_type="other"
                     /note="Rac binding site [polypeptide binding]"
                     /db_xref="CDD:153344"
     CDS             1..344
                     /gene="ARFIP2"
                     /coded_by="XM_054078925.1:131..1165"
                     /db_xref="GeneID:104054865"
ORIGIN      
        1 msegllgkaa tmeipissng dagslpeddg leqdlqqvmv sgpnlnetni vsggyggtae
       61 giiptgsikg sgllpphpgs gaageeivrg iagekfdivk kwgintykct kqllserfgr
      121 gsrtvdlele aqiellretk rryecvlqls ralahhfysl vqtqralgda fadlsqkape
      181 lqeefgynae tqkllcrnge tllgavnffv ssiqtlvhkt medtlitvkh yesarleyda
      241 yrtdleelsa gardagalcr mdaaqsqfqs hrdkyerlra dvavklkfle enkvkvmhkq
      301 lllfhnavss yfagnqqqle qtlkqfhvrl kapgaekpsw leeq
//
LOCUS       XP_053934915             303 aa            linear   VRT 09-MAR-2023
DEFINITION  ribosomal RNA-processing protein 8 [Cuculus canorus].
ACCESSION   XP_053934915
VERSION     XP_053934915.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078940.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..303
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..303
                     /product="ribosomal RNA-processing protein 8"
                     /calculated_mol_wt=33266
     Region          92..303
                     /region_name="AdoMet_MTases"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); cl17173"
                     /db_xref="CDD:473071"
     Site            order(165..171,184..185,195..197,213)
                     /site_type="other"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]"
                     /db_xref="CDD:100107"
     CDS             1..303
                     /gene="RRP8"
                     /coded_by="XM_054078940.1:31..942"
                     /db_xref="GeneID:128853503"
ORIGIN      
        1 maaarkessg gngarggggr ppggkaagte paprarkrkr rrkqkelpmd pkqeagqeae
       61 qeaeqeaeqe agqeagpvgs tsgrsaalrr rmeqrllgar frylnerlys cssrdaarlf
      121 rddpealrly hdgfarqlar wpqkpldrii qrlrqrpasl vvadfgcgdg alarslrnev
      181 hsfdlvalgp gvtvcdmaqv plpsasvdva vfclalmgtn lqeilqeanr vlrsggslmv
      241 aevasrfedl raflsamarl gfksvykdls spfffllefr ksgapcgrpl palrlwpcry
      301 kkr
//
LOCUS       XP_053934923             210 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription initiation factor TFIID subunit 10 [Cuculus canorus].
ACCESSION   XP_053934923
VERSION     XP_053934923.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078948.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..210
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..210
                     /product="transcription initiation factor TFIID subunit
                     10"
                     /calculated_mol_wt=20712
     Region          107..203
                     /region_name="HFD_TAF10"
                     /note="histone-fold domain found in transcription
                     initiation factor TFIID subunit 10 (TAF10) and similar
                     proteins; cd07982"
                     /db_xref="CDD:467026"
     Site            order(107..108,111..112,114..115,118..123,126..127,
                     129..131,134..137,140,142..143,146..147,149..156,158..160,
                     162..163,166,184..189,192,196,199)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467026"
     Site            order(129,132..137,140,142,154,164,168..169)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:467026"
     CDS             1..210
                     /gene="TAF10"
                     /coded_by="XM_054078948.1:31..663"
                     /db_xref="GeneID:128853506"
ORIGIN      
        1 msgssgeaea vpvpavpaap aappaplvap dsgskaspag gggsgaapga aggaargaeg
       61 gavpgrgtap vsaasaasss dasvangvfv pssaangevk pivsttplvd flmqledytp
      121 tipdavtgyy lnragfeasd priirlisla aqkfisdian dalqhckmkg tasgssrnks
      181 kdkkytltme dltpalaeyg invkkphyft
//
LOCUS       XP_053934931             791 aa            linear   VRT 09-MAR-2023
DEFINITION  intraflagellar transport protein 88 homolog isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053934931
VERSION     XP_053934931.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078956.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..791
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..791
                     /product="intraflagellar transport protein 88 homolog
                     isoform X1"
                     /calculated_mol_wt=89185
     Region          147..>361
                     /region_name="Spy"
                     /note="Predicted O-linked N-acetylglucosamine transferase,
                     SPINDLY family [Posttranslational modification, protein
                     turnover, chaperones]; COG3914"
                     /db_xref="CDD:443119"
     Region          197..225
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(198,201..202,205..206,208,234,237..238,241..242,
                     244..245,273,276..277,280..281,284)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          232..267
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          272..300
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          279..580
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          305..333
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          420..444
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          453..479
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          460..710
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          485..513
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(486,489..490,493..494,496,520,523..524,527..528,
                     530..531,554,557..558,561..562,565)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          518..548
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          553..581
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          587..615
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          621..647
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          655..679
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..791
                     /gene="IFT88"
                     /coded_by="XM_054078956.1:313..2688"
                     /db_xref="GeneID:104055322"
ORIGIN      
        1 mmqnvhlape adeddlysgy ndynptfdte dlendvafqq aartshgrrv pvtakipgtp
       61 asrslatgfg skatltssmg rpmtgaiqdg varpmtavqa agytkaamrg slfdplgqgr
      121 gpapplemkn sdsteekirq lekkvnelve escianscgd lklalekake agrkervlvr
      181 qreqtatpen fnsdltysvl fnlasqyaan emyaealniy qvivkdkifs nggrlkvnmg
      241 niylkqrnys kaikfyrmal dqvssahkem rikimqnigv afiktgqyid aissfehims
      301 tspnlkagfn lilcyfaign geqmkkafqk liavplevdy ddkyispndd phtnllieai
      361 kndslrqieh erksmaeeyi mtaakliapa ietsfavgyd wcveavkvsq yvelandlei
      421 nkatmylrqq efnqaletlk mfekkdsrvk saaatnlsfl yylenelaqa anyadlavns
      481 drynpaaltn kgntlfasgd yektaefyke alrndslcte alynlgltyk klnrideald
      541 cflklhailr nsaqvlyqia nlyemmgdpn qaiewllqli svvptdphvl aklgklydne
      601 gdksqafhyy sesyryfpsn ieviewlgay yidtqfceka ieyferaali lptqvkwqlm
      661 vascyrrsgn yqkalekykv ihrkfpenve clrflarlct diglkegqey etklkkvekl
      721 keikeqriks grdgsarsrr egsagpesgg tkgerlsakl kalpganepy essirkeigk
      781 washtfllfw p
//
LOCUS       XP_053934939             786 aa            linear   VRT 09-MAR-2023
DEFINITION  intraflagellar transport protein 88 homolog isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053934939
VERSION     XP_053934939.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078964.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..786
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..786
                     /product="intraflagellar transport protein 88 homolog
                     isoform X2"
                     /calculated_mol_wt=88714
     Region          147..>361
                     /region_name="Spy"
                     /note="Predicted O-linked N-acetylglucosamine transferase,
                     SPINDLY family [Posttranslational modification, protein
                     turnover, chaperones]; COG3914"
                     /db_xref="CDD:443119"
     Region          197..225
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(198,201..202,205..206,208,234,237..238,241..242,
                     244..245,273,276..277,280..281,284)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          232..267
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          272..300
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          279..580
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          305..333
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          420..444
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          453..479
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          460..710
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          485..513
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(486,489..490,493..494,496,520,523..524,527..528,
                     530..531,554,557..558,561..562,565)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          518..548
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          553..581
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          587..615
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          621..647
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          655..679
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..786
                     /gene="IFT88"
                     /coded_by="XM_054078964.1:314..2674"
                     /db_xref="GeneID:104055322"
ORIGIN      
        1 mmqnvhlape adeddlysgy ndynptfdte dlendvafqq aartshgrrv pvtakipgtp
       61 asrslatgfg skatltssmg rpmtgaiqdg varpmtavqa agytkaamrg slfdplgqgr
      121 gpapplemkn sdsteekirq lekkvnelve escianscgd lklalekake agrkervlvr
      181 qreqtatpen fnsdltysvl fnlasqyaan emyaealniy qvivkdkifs nggrlkvnmg
      241 niylkqrnys kaikfyrmal dqvssahkem rikimqnigv afiktgqyid aissfehims
      301 tspnlkagfn lilcyfaign geqmkkafqk liavplevdy ddkyispndd phtnllieai
      361 kndslrqieh erksmaeeyi mtaakliapa ietsfavgyd wcveavkvsq yvelandlei
      421 nkatmylrqq efnqaletlk mfekkdsrvk saaatnlsfl yylenelaqa anyadlavns
      481 drynpaaltn kgntlfasgd yektaefyke alrndslcte alynlgltyk klnrideald
      541 cflklhailr nsaqvlyqia nlyemmgdpn qaiewllqli svvptdphvl aklgklydne
      601 gdksqafhyy sesyryfpsn ieviewlgay yidtqfceka ieyferaali lptqvkwqlm
      661 vascyrrsgn yqkalekykv ihrkfpenve clrflarlct diglkegqey etklkkvekl
      721 keikeqriks grdgsarsrr egsagpdafy idplgpqaer pktaarkrae eddfadeqlg
      781 edllpe
//
LOCUS       XP_053934950             818 aa            linear   VRT 09-MAR-2023
DEFINITION  intraflagellar transport protein 88 homolog isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053934950
VERSION     XP_053934950.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078975.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..818
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..818
                     /product="intraflagellar transport protein 88 homolog
                     isoform X3"
                     /calculated_mol_wt=92113
     Region          147..>361
                     /region_name="Spy"
                     /note="Predicted O-linked N-acetylglucosamine transferase,
                     SPINDLY family [Posttranslational modification, protein
                     turnover, chaperones]; COG3914"
                     /db_xref="CDD:443119"
     Region          197..225
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(198,201..202,205..206,208,234,237..238,241..242,
                     244..245,273,276..277,280..281,284)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          232..267
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          272..300
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          279..580
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          305..333
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          420..444
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          453..479
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          460..710
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          485..513
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(486,489..490,493..494,496,520,523..524,527..528,
                     530..531,554,557..558,561..562,565)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          518..548
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          553..581
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          587..615
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          621..647
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          655..679
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..818
                     /gene="IFT88"
                     /coded_by="XM_054078975.1:314..2770"
                     /db_xref="GeneID:104055322"
ORIGIN      
        1 mmqnvhlape adeddlysgy ndynptfdte dlendvafqq aartshgrrv pvtakipgtp
       61 asrslatgfg skatltssmg rpmtgaiqdg varpmtavqa agytkaamrg slfdplgqgr
      121 gpapplemkn sdsteekirq lekkvnelve escianscgd lklalekake agrkervlvr
      181 qreqtatpen fnsdltysvl fnlasqyaan emyaealniy qvivkdkifs nggrlkvnmg
      241 niylkqrnys kaikfyrmal dqvssahkem rikimqnigv afiktgqyid aissfehims
      301 tspnlkagfn lilcyfaign geqmkkafqk liavplevdy ddkyispndd phtnllieai
      361 kndslrqieh erksmaeeyi mtaakliapa ietsfavgyd wcveavkvsq yvelandlei
      421 nkatmylrqq efnqaletlk mfekkdsrvk saaatnlsfl yylenelaqa anyadlavns
      481 drynpaaltn kgntlfasgd yektaefyke alrndslcte alynlgltyk klnrideald
      541 cflklhailr nsaqvlyqia nlyemmgdpn qaiewllqli svvptdphvl aklgklydne
      601 gdksqafhyy sesyryfpsn ieviewlgay yidtqfceka ieyferaali lptqvkwqlm
      661 vascyrrsgn yqkalekykv ihrkfpenve clrflarlct diglkegqey etklkkvekl
      721 keikeqriks grdgsarsrr egsagpesgg tkgerlsakl kalpganepy essirkeida
      781 fyidplgpqa erpktaarkr aeeddfadeq lgedllpe
//
LOCUS       XP_053934959             756 aa            linear   VRT 09-MAR-2023
DEFINITION  ribosomal RNA processing protein 1 homolog B isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053934959
VERSION     XP_053934959.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078984.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..756
                     /product="ribosomal RNA processing protein 1 homolog B
                     isoform X1"
                     /calculated_mol_wt=84575
     Region          11..219
                     /region_name="Nop52"
                     /note="Nucleolar protein,Nop52; pfam05997"
                     /db_xref="CDD:461800"
     CDS             1..756
                     /gene="RRP1B"
                     /coded_by="XM_054078984.1:87..2357"
                     /db_xref="GeneID:104059245"
ORIGIN      
        1 mapaalqppe iqfaqrlaan ekrirdralk klrgyigvrt qrpaggfsqe ellkiwkglf
       61 ycmwmqdkpl lqeeladnis qlihifqnte arhlfiqtfw etmnrewtgi dglrldkyym
      121 lmrrilrqsf evlkrnewde slielllqll mkevmdpdsn apmgiklhfi diyldelakv
      181 gakeltadqn lkfiepfcki aakskergvl paiatgifev ivdqspyaie dlmkelgsns
      241 deedvseedk qeseevlktk adrslsrksa qssektedin endddgigav lqfdykavad
      301 klfelaskkn tpsinrkrly klvkkfqdla egifpqdfpe dvstdeddde fsrgkrkkka
      361 vkpweknkle kvkdledeqe msstkeasvh qkkrkkrkkr gspstafgta dgnceekiae
      421 tsgsnvfsqm kvpennkesk kkkvllnean ettnvatdtt ekhisaqhst adaelieksq
      481 lkkmnpkvqn vpvkpacqng panvskaedv slsvtpltpk vvkkkqkaga alvngdtvlq
      541 qsdmksnkei llgtlsgdad sesaplkkik lqtatklvgl egmkgsiqka atlkkkrkvk
      601 evlnsveang vletackksr kgessaalss lkkkkakpgs dfvkfeksts pkpvffkkar
      661 ctisstrasm qlnklqssss kkvtfglnkn mtaefkktdk silvspegps rvafnpeqkp
      721 rhgvlksptg tparepqtkk pftvsvkkrp aavdff
//
LOCUS       XP_053934963             755 aa            linear   VRT 09-MAR-2023
DEFINITION  ribosomal RNA processing protein 1 homolog B isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053934963
VERSION     XP_053934963.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054078988.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..755
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..755
                     /product="ribosomal RNA processing protein 1 homolog B
                     isoform X2"
                     /calculated_mol_wt=84504
     Region          11..219
                     /region_name="Nop52"
                     /note="Nucleolar protein,Nop52; pfam05997"
                     /db_xref="CDD:461800"
     CDS             1..755
                     /gene="RRP1B"
                     /coded_by="XM_054078988.1:87..2354"
                     /db_xref="GeneID:104059245"
ORIGIN      
        1 mapaalqppe iqfaqrlaan ekrirdralk klrgyigvrt qrpaggfsqe ellkiwkglf
       61 ycmwmqdkpl lqeeladnis qlihifqnte arhlfiqtfw etmnrewtgi dglrldkyym
      121 lmrrilrqsf evlkrnewde slielllqll mkevmdpdsn apmgiklhfi diyldelakv
      181 gakeltadqn lkfiepfcki aakskergvl paiatgifev ivdqspyaie dlmkelgsns
      241 deedvseedk qeseevlktk drslsrksaq ssektedine ndddgigavl qfdykavadk
      301 lfelaskknt psinrkrlyk lvkkfqdlae gifpqdfped vstdedddef srgkrkkkav
      361 kpweknklek vkdledeqem sstkeasvhq kkrkkrkkrg spstafgtad gnceekiaet
      421 sgsnvfsqmk vpennkeskk kkvllneane ttnvatdtte khisaqhsta daelieksql
      481 kkmnpkvqnv pvkpacqngp anvskaedvs lsvtpltpkv vkkkqkagaa lvngdtvlqq
      541 sdmksnkeil lgtlsgdads esaplkkikl qtatklvgle gmkgsiqkaa tlkkkrkvke
      601 vlnsveangv letackksrk gessaalssl kkkkakpgsd fvkfekstsp kpvffkkarc
      661 tisstrasmq lnklqssssk kvtfglnknm taefkktdks ilvspegpsr vafnpeqkpr
      721 hgvlksptgt parepqtkkp ftvsvkkrpa avdff
//
LOCUS       XP_053934975            1151 aa            linear   VRT 09-MAR-2023
DEFINITION  exportin-4 isoform X1 [Cuculus canorus].
ACCESSION   XP_053934975
VERSION     XP_053934975.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079000.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1151
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1151
                     /product="exportin-4 isoform X1"
                     /calculated_mol_wt=129939
     CDS             1..1151
                     /gene="XPO4"
                     /coded_by="XM_054079000.1:132..3587"
                     /db_xref="GeneID:104055318"
ORIGIN      
        1 mmaaaagape viaqlenaak vlmappsmvn neqrqhaehi flsfrksksp favckhilet
       61 skvdyvlfqa ataimeavvr ewillektsi eslrtfllty vlqrpnlqky vreqillava
      121 vivkrgsldk sidcksifhe vsqlissgnp tvqtlacsil tallsefsss sktsniglsm
      181 efhgnckrif qeddlrqifm ltvevlqefs rrenlnaqms svfqrylala nqvlswnflp
      241 pnlgrhyiam fessqnvmlk pteswretll dsrvmelfft vhrkiredtd maqdslqcla
      301 qlaslhgpvf pdegsqvdyl ahfiegllnt ingieiedse avgissiisn litvfprnil
      361 taipnelfss fvnclahltc sfgrsaalee vldkddmvym eaydkllesw ltlvqddkhf
      421 hkgfftqhav qvfnsyiqch laapdgtrnl tangvasree eeiselqedd rdqfcdqlas
      481 vgmlgriaae hciplltsll edrvtrlhgq lqrhqqqlla spasgsidnk vlddlyedih
      541 wlilvtgyll andtqgetpl ippevmeysi khsaevdint tlqilgspge kassipgynr
      601 tdsvirllsa ilrvsevesr airanlthll spqmgkdivw flkrwaktyl lvdeklydqi
      661 slpfstafga dtegsqwivg yllekvisnl avwsseqdla ndtvqllvtl verreranlv
      721 iqcenwwnla kqfarrsppl hylsssvqrt lmkalvlggf ahmdtetkqq ywtevlqplq
      781 qrflnvinqe nfqqicqeee vkqeitatle alcgiaeatq idnvailfnf lmdflnncig
      841 lmevykntpe tvnliievfv evahkqicyl geakamnlye acltllqvys knnlgrqrid
      901 vtaeedqyqd lllimelltn llskefidfs dtdevfrghe pgqatnrsvs aadvvlygvn
      961 lvlplmsqdl lkfpslcnqy yklitficei fpekipqlpe dlfkslmysl elgmssmsse
     1021 vcqlcleavt plaeqcakaq etdstlflat rhflkmvfdm lvlqkhntem ttaageafyt
     1081 lvclhqaeys elvetllstq qdpviyqrla dafnkltass tpptldrkqk maflksleef
     1141 manvggllcv k
//
LOCUS       XP_053934983            1023 aa            linear   VRT 09-MAR-2023
DEFINITION  exportin-4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053934983
VERSION     XP_053934983.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079008.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1023
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1023
                     /product="exportin-4 isoform X2"
                     /calculated_mol_wt=115105
     CDS             1..1023
                     /gene="XPO4"
                     /coded_by="XM_054079008.1:132..3203"
                     /db_xref="GeneID:104055318"
ORIGIN      
        1 mmaaaagape viaqlenaak vlmappsmvn neqrqhaehi flsfrksksp favckhilet
       61 skvdyvlfqa ataimeavvr ewillektsi eslrtfllty vlqrpnlqky vreqillava
      121 vivkrgsldk sidcksifhe vsqlissgnp tvvhrkired tdmaqdslqc laqlaslhgp
      181 vfpdegsqvd ylahfiegll ntingieied seavgissii snlitvfprn iltaipnelf
      241 ssfvnclahl tcsfgrsaal eevldkddmv ymeaydklle swltlvqddk hfhkgfftqh
      301 avqvfnsyiq chlaapdgtr nltangvasr eeeeiselqe ddrdqfcdql asvgmlgria
      361 aehcipllts lledrvtrlh gqlqrhqqql laspasgsid nkvlddlyed ihwlilvtgy
      421 llandtqget plippevmey sikhsaevdi nttlqilgsp gekassipgy nrtdsvirll
      481 sailrvseve srairanlth llspqmgkdi vwflkrwakt yllvdeklyd qislpfstaf
      541 gadtegsqwi vgyllekvis nlavwsseqd landtvqllv tlverreran lviqcenwwn
      601 lakqfarrsp plhylsssvq rtlmkalvlg gfahmdtetk qqywtevlqp lqqrflnvin
      661 qenfqqicqe eevkqeitat lealcgiaea tqidnvailf nflmdflnnc iglmevyknt
      721 petvnliiev fvevahkqic ylgeakamnl yeacltllqv ysknnlgrqr idvtaeedqy
      781 qdlllimell tnllskefid fsdtdevfrg hepgqatnrs vsaadvvlyg vnlvlplmsq
      841 dllkfpslcn qyyklitfic eifpekipql pedlfkslmy slelgmssms sevcqlclea
      901 vtplaeqcak aqetdstlfl atrhflkmvf dmlvlqkhnt emttaageaf ytlvclhqae
      961 yselvetlls tqqdpviyqr ladafnklta sstpptldrk qkmaflksle efmanvggll
     1021 cvk
//
LOCUS       XP_053934990             416 aa            linear   VRT 09-MAR-2023
DEFINITION  mitochondrial tRNA-specific 2-thiouridylase 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053934990
VERSION     XP_053934990.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079015.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..416
                     /product="mitochondrial tRNA-specific 2-thiouridylase 1
                     isoform X1"
                     /calculated_mol_wt=47578
     Region          13..384
                     /region_name="MnmA_TRMU-like"
                     /note="MnmA/TRMU family 2-thiouridylases and similar
                     proteins; cd01998"
                     /db_xref="CDD:467502"
     CDS             1..416
                     /gene="TRMU"
                     /coded_by="XM_054079015.1:53..1303"
                     /db_xref="GeneID:104056077"
ORIGIN      
        1 mmaaarrvac avsggvdsav aalllrrrgy evtgvfmknw dpldeqgdcs idrdcedayr
       61 vcqkldipfh qvsyvkeywn evfsdllkey elgrtpnpdi vcnkhikfny flhyamdnlg
      121 adaiatghya rtsledeevf qqkhikrpqr lfrnrfevrn pvkllqgadl fkdqtfflsq
      181 isqdalrkti fplgdltksf vkkiaaehgl hhvlkkkesm gicfigerkf enflleyiep
      241 qpgnfvsied kkvmgthkgw flytigqrar laglkeawfi vdkdvstgdv fvapstdhpa
      301 lyrdllrtnr vhwiaeeppp elvrekmmec hfrfrhqmal vpcvltlnqd gsvwvtlvkp
      361 araitpgqfa vfykgdeclg sgkivrigps vytmqqgknr eegpkkeevd kiepvt
//
LOCUS       XP_053934997             391 aa            linear   VRT 09-MAR-2023
DEFINITION  mitochondrial tRNA-specific 2-thiouridylase 1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053934997
VERSION     XP_053934997.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079022.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..391
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..391
                     /product="mitochondrial tRNA-specific 2-thiouridylase 1
                     isoform X2"
                     /calculated_mol_wt=44892
     Region          13..369
                     /region_name="MnmA_TRMU-like"
                     /note="MnmA/TRMU family 2-thiouridylases and similar
                     proteins; cd01998"
                     /db_xref="CDD:467502"
     CDS             1..391
                     /gene="TRMU"
                     /coded_by="XM_054079022.1:53..1228"
                     /db_xref="GeneID:104056077"
ORIGIN      
        1 mmaaarrvac avsggvdsav aalllrrrgy evtgvfmknw dpldeqgdcs idrdcedayr
       61 vcqkldipfh qvsyvkeywn evfsdllkey elgrtpnpdi vcnkhikfny flhyamdnlg
      121 adaiatghya rtsledeevf qqkhikrpqr lfrnrfevrn pvkllqgadl fkdqtfflsq
      181 isqdalrkti fplgdltksf vkkiaaehgl hhvlkkkesm gicfigerkf enflleyiep
      241 qpgnfvsied kkvmgthkgw flytigqrar laglkeawfi vdkdvstgdv fvapstdhpa
      301 lyrdllrtnr vhwiaeeppp elvrekmmec hfrfrhqmal vpcvltlnqd gsvwvtlvkp
      361 araitpgqht sscgdkkqea yfqqevssre k
//
LOCUS       XP_053935005             385 aa            linear   VRT 09-MAR-2023
DEFINITION  mitochondrial tRNA-specific 2-thiouridylase 1 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053935005
VERSION     XP_053935005.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079030.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..385
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..385
                     /product="mitochondrial tRNA-specific 2-thiouridylase 1
                     isoform X3"
                     /calculated_mol_wt=44262
     Region          13..372
                     /region_name="MnmA_TRMU-like"
                     /note="MnmA/TRMU family 2-thiouridylases and similar
                     proteins; cd01998"
                     /db_xref="CDD:467502"
     CDS             1..385
                     /gene="TRMU"
                     /coded_by="XM_054079030.1:53..1210"
                     /db_xref="GeneID:104056077"
ORIGIN      
        1 mmaaarrvac avsggvdsav aalllrrrgy evtgvfmknw dpldeqgdcs idrdcedayr
       61 vcqkldipfh qvsyvkeywn evfsdllkey elgrtpnpdi vcnkhikfny flhyamdnlg
      121 adaiatghya rtsledeevf qqkhikrpqr lfrnrfevrn pvkllqgadl fkdqtfflsq
      181 isqdalrkti fplgdltksf vkkiaaehgl hhvlkkkesm gicfigerkf enflleyiep
      241 qpgnfvsied kkvmgthkgw flytigqrar laglkeawfi vdkdvstgdv fvapstdhpa
      301 lyrdllrtnr vhwiaeeppp elvrekmmec hfrfrhqmal vpcvltlnqd gsvwvtlvkp
      361 araitpgqdv lyppsfpeni rrqiv
//
LOCUS       XP_053935012             349 aa            linear   VRT 09-MAR-2023
DEFINITION  mitochondrial tRNA-specific 2-thiouridylase 1 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053935012
VERSION     XP_053935012.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079037.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..349
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..349
                     /product="mitochondrial tRNA-specific 2-thiouridylase 1
                     isoform X4"
                     /calculated_mol_wt=39898
     Region          <18..317
                     /region_name="MnmA_TRMU-like"
                     /note="MnmA/TRMU family 2-thiouridylases and similar
                     proteins; cd01998"
                     /db_xref="CDD:467502"
     CDS             1..349
                     /gene="TRMU"
                     /coded_by="XM_054079037.1:183..1232"
                     /db_xref="GeneID:104056077"
ORIGIN      
        1 mnreiapltg ivkmltgdll keyelgrtpn pdivcnkhik fnyflhyamd nlgadaiatg
       61 hyartslede evfqqkhikr pqrlfrnrfe vrnpvkllqg adlfkdqtff lsqisqdalr
      121 ktifplgdlt ksfvkkiaae hglhhvlkkk esmgicfige rkfenflley iepqpgnfvs
      181 iedkkvmgth kgwflytigq rarlaglkea wfivdkdvst gdvfvapstd hpalyrdllr
      241 tnrvhwiaee pppelvrekm mechfrfrhq malvpcvltl nqdgsvwvtl vkparaitpg
      301 qfavfykgde clgsgkivri gpsvytmqqg knreegpkke evdkiepvt
//
LOCUS       XP_053935024             439 aa            linear   VRT 09-MAR-2023
DEFINITION  SET domain-containing protein 4 isoform X1 [Cuculus canorus].
ACCESSION   XP_053935024
VERSION     XP_053935024.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079049.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..439
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..439
                     /product="SET domain-containing protein 4 isoform X1"
                     /calculated_mol_wt=50523
     Region          45..286
                     /region_name="SET_SETD4"
                     /note="SET domain found in SET domain-containing protein 4
                     (SETD4) and similar proteins; cd19177"
                     /db_xref="CDD:380954"
     Site            order(58..59,205..206,232..237,271,283,285)
                     /site_type="other"
                     /note="putative SAM binding site"
                     /db_xref="CDD:380954"
     Site            order(58..59,76,203..208,232..236,244,269..272)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:380954"
     Region          307..424
                     /region_name="Rubis-subs-bind"
                     /note="Rubisco LSMT substrate-binding; pfam09273"
                     /db_xref="CDD:462737"
     CDS             1..439
                     /gene="SETD4"
                     /coded_by="XM_054079049.1:164..1483"
                     /db_xref="GeneID:104064742"
ORIGIN      
        1 mkksrgrtgr krrrkhlqsf mdgvncshql eyimlkkwlk drgfedsnlr paqfwdtgrg
       61 lmttkalqag dliislpekc llttatvlss clgeyimkwk ppvsplialc tfliaekhag
      121 ekslwkpyld vlpktytcpv ylehdvvslf peplrkkaqe qrtmvhelym sskdfffslq
      181 plfaenteti fnysalewaw ctvntrtiyv khsqrecfsl epdvyalapy ldllnhspnv
      241 qvkgafneqt rsyeirtnsq ckkyeevfic ygphdnqrll leygfvamnn phssvyvssd
      301 tllkyfppvd kqrnakisil kdhdflenlt fgwdgpswrl ltalkllslg tdeftcwkrt
      361 llggvisarn eqqtltitak ichflieetq hvllqisqlk rnrenlgkhl alvealrled
      421 lkilqksaei lsdlngatt
//
LOCUS       XP_053935032             439 aa            linear   VRT 09-MAR-2023
DEFINITION  SET domain-containing protein 4 isoform X1 [Cuculus canorus].
ACCESSION   XP_053935032
VERSION     XP_053935032.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079057.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..439
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..439
                     /product="SET domain-containing protein 4 isoform X1"
                     /calculated_mol_wt=50523
     Region          45..286
                     /region_name="SET_SETD4"
                     /note="SET domain found in SET domain-containing protein 4
                     (SETD4) and similar proteins; cd19177"
                     /db_xref="CDD:380954"
     Site            order(58..59,205..206,232..237,271,283,285)
                     /site_type="other"
                     /note="putative SAM binding site"
                     /db_xref="CDD:380954"
     Site            order(58..59,76,203..208,232..236,244,269..272)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:380954"
     Region          307..424
                     /region_name="Rubis-subs-bind"
                     /note="Rubisco LSMT substrate-binding; pfam09273"
                     /db_xref="CDD:462737"
     CDS             1..439
                     /gene="SETD4"
                     /coded_by="XM_054079057.1:1265..2584"
                     /db_xref="GeneID:104064742"
ORIGIN      
        1 mkksrgrtgr krrrkhlqsf mdgvncshql eyimlkkwlk drgfedsnlr paqfwdtgrg
       61 lmttkalqag dliislpekc llttatvlss clgeyimkwk ppvsplialc tfliaekhag
      121 ekslwkpyld vlpktytcpv ylehdvvslf peplrkkaqe qrtmvhelym sskdfffslq
      181 plfaenteti fnysalewaw ctvntrtiyv khsqrecfsl epdvyalapy ldllnhspnv
      241 qvkgafneqt rsyeirtnsq ckkyeevfic ygphdnqrll leygfvamnn phssvyvssd
      301 tllkyfppvd kqrnakisil kdhdflenlt fgwdgpswrl ltalkllslg tdeftcwkrt
      361 llggvisarn eqqtltitak ichflieetq hvllqisqlk rnrenlgkhl alvealrled
      421 lkilqksaei lsdlngatt
//
LOCUS       XP_053935038             405 aa            linear   VRT 09-MAR-2023
DEFINITION  SET domain-containing protein 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053935038
VERSION     XP_053935038.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079063.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..405
                     /product="SET domain-containing protein 4 isoform X2"
                     /calculated_mol_wt=46422
     Region          45..252
                     /region_name="SET_SETD4"
                     /note="SET domain found in SET domain-containing protein 4
                     (SETD4) and similar proteins; cd19177"
                     /db_xref="CDD:380954"
     Site            order(58..59,171..172,198..203,237,249,251)
                     /site_type="other"
                     /note="putative SAM binding site"
                     /db_xref="CDD:380954"
     Site            order(58..59,76,169..174,198..202,210,235..238)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:380954"
     Region          273..390
                     /region_name="Rubis-subs-bind"
                     /note="Rubisco LSMT substrate-binding; pfam09273"
                     /db_xref="CDD:462737"
     CDS             1..405
                     /gene="SETD4"
                     /coded_by="XM_054079063.1:164..1381"
                     /db_xref="GeneID:104064742"
ORIGIN      
        1 mkksrgrtgr krrrkhlqsf mdgvncshql eyimlkkwlk drgfedsnlr paqfwdtgrg
       61 lmttkalqag dliislpekc llttatvlss clgeyimkwk ppvsplialc tfliaekhag
      121 ekslwkpyld vlpktytcpv ylehdvplfa entetifnys alewawctvn trtiyvkhsq
      181 recfslepdv yalapyldll nhspnvqvkg afneqtrsye irtnsqckky eevficygph
      241 dnqrllleyg fvamnnphss vyvssdtllk yfppvdkqrn akisilkdhd flenltfgwd
      301 gpswrlltal kllslgtdef tcwkrtllgg visarneqqt ltitakichf lieetqhvll
      361 qisqlkrnre nlgkhlalve alrledlkil qksaeilsdl ngatt
//
LOCUS       XP_053935046             276 aa            linear   VRT 09-MAR-2023
DEFINITION  carbonyl reductase [NADPH] 1 [Cuculus canorus].
ACCESSION   XP_053935046
VERSION     XP_053935046.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079071.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..276
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..276
                     /product="carbonyl reductase [NADPH] 1"
                     /calculated_mol_wt=30202
     Region          6..276
                     /region_name="carb_red_PTCR-like_SDR_c"
                     /note="Porcine testicular carbonyl reductase (PTCR)-like,
                     classical (c) SDRs; cd05324"
                     /db_xref="CDD:187585"
     Site            order(11,13..16,37,41,61..63,89..92,112,171..173,193,197,
                     226..230,232..235)
                     /site_type="other"
                     /note="NADP binding site [chemical binding]"
                     /db_xref="CDD:187585"
     Site            order(93..94,173..175,189,193,226,228..229,234..235)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:187585"
     Site            order(113,173,193,197)
                     /site_type="active"
                     /db_xref="CDD:187585"
     CDS             1..276
                     /gene="LOC104064741"
                     /coded_by="XM_054079071.1:172..1002"
                     /db_xref="GeneID:104064741"
ORIGIN      
        1 mssvpvavvt gsnkgiglai vralcrqfqg dvyltardpg rgqeavaelq reglralfyq
       61 ldiddlqsir alrdflkeky gglnvlinna giafkvhdtt pfavqaevtl ktnffgtrnv
      121 ctellplmkp ygrvvnvssm vsssalkgcs qelqqkfrsn titedelvel mtkfvedtkk
      181 gvhekegwpn taygvskigv tvlsriqarm lnekrkgdhi llnaccpgwv rtdmagpkat
      241 kspeegaetp vylallpsda dgphgqfvsd ktvrtw
//
LOCUS       XP_053935053             276 aa            linear   VRT 09-MAR-2023
DEFINITION  carbonyl reductase [NADPH] 1 [Cuculus canorus].
ACCESSION   XP_053935053
VERSION     XP_053935053.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079078.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..276
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..276
                     /product="carbonyl reductase [NADPH] 1"
                     /calculated_mol_wt=30202
     Region          6..276
                     /region_name="carb_red_PTCR-like_SDR_c"
                     /note="Porcine testicular carbonyl reductase (PTCR)-like,
                     classical (c) SDRs; cd05324"
                     /db_xref="CDD:187585"
     Site            order(11,13..16,37,41,61..63,89..92,112,171..173,193,197,
                     226..230,232..235)
                     /site_type="other"
                     /note="NADP binding site [chemical binding]"
                     /db_xref="CDD:187585"
     Site            order(93..94,173..175,189,193,226,228..229,234..235)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:187585"
     Site            order(113,173,193,197)
                     /site_type="active"
                     /db_xref="CDD:187585"
     CDS             1..276
                     /gene="LOC104064741"
                     /coded_by="XM_054079078.1:155..985"
                     /db_xref="GeneID:104064741"
ORIGIN      
        1 mssvpvavvt gsnkgiglai vralcrqfqg dvyltardpg rgqeavaelq reglralfyq
       61 ldiddlqsir alrdflkeky gglnvlinna giafkvhdtt pfavqaevtl ktnffgtrnv
      121 ctellplmkp ygrvvnvssm vsssalkgcs qelqqkfrsn titedelvel mtkfvedtkk
      181 gvhekegwpn taygvskigv tvlsriqarm lnekrkgdhi llnaccpgwv rtdmagpkat
      241 kspeegaetp vylallpsda dgphgqfvsd ktvrtw
//
LOCUS       XP_053935062             910 aa            linear   VRT 09-MAR-2023
DEFINITION  periodic tryptophan protein 2 homolog [Cuculus canorus].
ACCESSION   XP_053935062
VERSION     XP_053935062.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079087.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..910
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..910
                     /product="periodic tryptophan protein 2 homolog"
                     /calculated_mol_wt=101916
     Region          10..400
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          101..142
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          148..186
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          191..308
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          318..640
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          329..367
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          373..409
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          414..450
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          458..494
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          500..537
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          542..597
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          604..628
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          766..871
                     /region_name="Utp12"
                     /note="Dip2/Utp12 Family; pfam04003"
                     /db_xref="CDD:461125"
     CDS             1..910
                     /gene="PWP2"
                     /coded_by="XM_054079087.1:112..2844"
                     /db_xref="GeneID:104059279"
ORIGIN      
        1 mkfayrfsgl lgtvyrrgnl sftrdgsslv spvgnrisvf dlknnkcety platrlnivc
       61 vglspdgsla ilideegaal lvsligkcvi hrfyfhkpvh svsfspdgkk fvitkdnval
      121 myhapgkkre fnafvldkty ygpydettci dwtddskcfa vgskdmstwv fgaerwanli
      181 yyslgghkdv ivacffeens ldlytvsqda alcvwqcdte ldglkpmppk dvasennaek
      241 deelleepkg eeirgkanps ekesrnkvky srvakyffnk egdfnnltsa ayhkkthllv
      301 tgfasgifhl helpdfnlih slsisdqria sisinctgdw iafgcsglgq llvwewqses
      361 yvlkqqghfn smvslayspd gqyivtgged gkvkvwntss sfcfvtfteh nsgvtavtft
      421 stgyvilsas ldgtvrafdl hryrnfrtft sprptqfscl avdssgeivs agsqdsfeif
      481 iwsmqsgrll dilsghegpi sslsfnptkc vlasaswdkt vklwdmldsw rtketlilns
      541 dvlvvafrpd gkelavaaln gqitfwdhen avqtgsiegr hdlqmgrkel dkitakqaak
      601 gksfttlcys adgqsilagg lskfvciyni keqilmkkfe iscnfsldam eeyldrrkmt
      661 efgsmalide gaggedgvai plpgvkrgdm syrhfkpeir vtclqfsptg rswaattteg
      721 lliysldagl ifdpfeldid itpsnirktl rqkeytvaiv mafklnekrl iqeviesvps
      781 nevdvvctsl pdlyvekvle flasafetsc hlefyliwah kllmlhgqkl ktrsvkllpv
      841 iqflqksiqr hfedvsklce wniynikyal aisqqrgmkr laeetsvded dldsdsdylm
      901 qevhkdnlss
//
LOCUS       XP_053935071             306 aa            linear   VRT 09-MAR-2023
DEFINITION  ICOS ligand [Cuculus canorus].
ACCESSION   XP_053935071
VERSION     XP_053935071.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079096.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..306
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..306
                     /product="ICOS ligand"
                     /calculated_mol_wt=34220
     Region          31..138
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          34..38
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409529"
     Region          51..55
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409529"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409529"
     Region          113..118
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409529"
     Region          130..133
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409529"
     Region          144..229
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          160..164
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409429"
     Region          174..178
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409429"
     Region          205..209
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409429"
     Region          216..221
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409429"
     Region          231..234
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409429"
     CDS             1..306
                     /gene="ICOSLG"
                     /coded_by="XM_054079096.1:70..990"
                     /db_xref="GeneID:104059281"
ORIGIN      
        1 mesrrygfll lvlhtmravi aleeiivgkp gdnatlsciy qerevllknl rvywqiaddq
       61 eecsvvhali sgrdneseqc ihfknrtqlf wdrlengdfs llllnisksd ehtykcvvlq
      121 kteytkvihq akvvlslaas ysqpilsgpi rnsdstgeev tfscksgngy pkpnvywink
      181 tdnshlspse lkitlhtdgt ysvfstlkvk atsnmeiecs ienkilhanl sanytqqtqs
      241 sgsnteshkn lekkgqgaqa agiisivili gllvgltcwl wrrrssklis ytdvqpnedk
      301 glnlpv
//
LOCUS       XP_053935081             259 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamine amidotransferase-like class 1 domain-containing protein
            3, mitochondrial [Cuculus canorus].
ACCESSION   XP_053935081
VERSION     XP_053935081.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079106.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..259
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..259
                     /product="glutamine amidotransferase-like class 1
                     domain-containing protein 3, mitochondrial"
                     /calculated_mol_wt=27374
     Region          36..257
                     /region_name="GATase1_ES1"
                     /note="Type 1 glutamine amidotransferase (GATase1)-like
                     domain found in zebrafish ES1; cd03133"
                     /db_xref="CDD:153227"
     Site            168
                     /site_type="active"
                     /note="conserved cys residue [active]"
                     /db_xref="CDD:153227"
     CDS             1..259
                     /gene="GATD3"
                     /coded_by="XM_054079106.1:27..806"
                     /db_xref="GeneID:104059280"
ORIGIN      
        1 mltaralsvr falrwaapar paalhcsarr phparvavvl sgcgvydgte iheasailvh
       61 lsrggaevqm yapdvpqmhv idhskgqpae aesrnvlves ariargkias laklttaehd
      121 avifpggfga aknlstfavd gkdckvnrev ervlkdfhka gkpiglccis pvlaakvlsg
      181 aevtvgheee eggkwpyagt agaikelggk hcvkevteah vdtknkvvtt pafmcetelh
      241 hifdgigamv knvlkltgk
//
LOCUS       XP_053935089             191 aa            linear   VRT 09-MAR-2023
DEFINITION  programmed cell death 1 ligand 1-like [Cuculus canorus].
ACCESSION   XP_053935089
VERSION     XP_053935089.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079114.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..191
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..191
                     /product="programmed cell death 1 ligand 1-like"
                     /calculated_mol_wt=21286
     Region          39..128
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          45..49
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          63..67
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          106..110
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          120..125
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..191
                     /gene="LOC128853525"
                     /coded_by="XM_054079114.1:152..727"
                     /db_xref="GeneID:128853525"
ORIGIN      
        1 mipkiwegtk mkwetalwmv acllfaslpr gqpdtichaf vgetvvlpct ttppgeqals
       61 ksmlywqies vlvhffhngq dslkfqdkhy hgrtslflhq mkhgnfslkl snvqlqdaav
      121 ytciykqtgd hliktqksei klivsapsst ekapspsghs qisfrslada pclamlplsf
      181 hllvtlgvwh l
//
LOCUS       XP_009561645             238 aa            linear   VRT 09-MAR-2023
DEFINITION  protein lifeguard 4 [Cuculus canorus].
ACCESSION   XP_009561645
VERSION     XP_009561645.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563350.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561645.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..238
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..238
                     /product="protein lifeguard 4"
                     /calculated_mol_wt=26516
     Region          8..223
                     /region_name="GAAP_like"
                     /note="Golgi antiapoptotic protein; cd10429"
                     /db_xref="CDD:198411"
     CDS             1..238
                     /gene="TMBIM4"
                     /coded_by="XM_009563350.2:64..780"
                     /db_xref="GeneID:104061407"
ORIGIN      
        1 maaaehlypr ssieddfnyg snvasasvhi rmaflrkvys ilsiqvlltt vtsaiflyst
       61 gvqafvherp alllmsglgs lavivaltfy rhqhpvnlyl lfgftlleal tvaiavsfyd
      121 vsvvlqafil ttavfvgltt ytlqskrdfs kfgaglfacl wilifsgflr lffysetidl
      181 vfaaagallf cgfiiydthl lmhklspeey ilaainlyld iinlflhllr lleafnkk
//
LOCUS       XP_053935130             114 aa            linear   VRT 09-MAR-2023
DEFINITION  protein LLP homolog [Cuculus canorus].
ACCESSION   XP_053935130
VERSION     XP_053935130.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079155.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..114
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..114
                     /product="protein LLP homolog"
                     /calculated_mol_wt=13233
     Region          3..99
                     /region_name="Laps"
                     /note="Learning-associated protein; pfam10169"
                     /db_xref="CDD:462976"
     CDS             1..114
                     /gene="LLPH"
                     /coded_by="XM_054079155.1:128..472"
                     /db_xref="GeneID:104061416"
ORIGIN      
        1 makslrskwr rkmraekrkk naprelerlk kilgtnadvv meevkevatv lppqkaieqa
       61 ddckmdvdnk rnkktlldqh gqypiwmnsr qrkklkaqrv kgkkkaklak glaw
//
LOCUS       XP_053935140             114 aa            linear   VRT 09-MAR-2023
DEFINITION  protein LLP homolog [Cuculus canorus].
ACCESSION   XP_053935140
VERSION     XP_053935140.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079165.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..114
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..114
                     /product="protein LLP homolog"
                     /calculated_mol_wt=13233
     Region          3..99
                     /region_name="Laps"
                     /note="Learning-associated protein; pfam10169"
                     /db_xref="CDD:462976"
     CDS             1..114
                     /gene="LLPH"
                     /coded_by="XM_054079165.1:70..414"
                     /db_xref="GeneID:104061416"
ORIGIN      
        1 makslrskwr rkmraekrkk naprelerlk kilgtnadvv meevkevatv lppqkaieqa
       61 ddckmdvdnk rnkktlldqh gqypiwmnsr qrkklkaqrv kgkkkaklak glaw
//
LOCUS       XP_053935150             648 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily KQT member 1 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053935150
VERSION     XP_053935150.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079175.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..648
                     /product="potassium voltage-gated channel subfamily KQT
                     member 1 isoform X1"
                     /calculated_mol_wt=72146
     Region          122..358
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          476..616
                     /region_name="KCNQ_channel"
                     /note="KCNQ voltage-gated potassium channel; pfam03520"
                     /db_xref="CDD:460954"
     CDS             1..648
                     /gene="LOC104066628"
                     /coded_by="XM_054079175.1:281..2227"
                     /db_xref="GeneID:104066628"
ORIGIN      
        1 mscdssevvg hpiykpceqi qcstsqlssp ngnrksaall kvrgslsnmq yssvaldpet
       61 lenngsgiph speegtkata ltasgvrrac ttkcfhshyl tktstqgdvy nflerpsgwk
      121 cfiyhftvfl lvliclifsv lstiehysef atgtlfwmei vlvvffgaey vvrlwsagcr
      181 skyvgfqgri rfarkpisii dlivvvasii vlsigsngqv fatsairgir flqilrmlhv
      241 drqggtwrll gsvvfihrqe littlyigfl glifssyfvy laekdavded gktgfssyad
      301 alwwgvvtvt tigygdkvpq twigktvasc fsvfaisffa lpagilgsgf alkvqqkqrq
      361 khfnrqipaa asliqtlwrc yaaekscsst atwkiyvtsp vhnpkkppap sspslrkqar
      421 rykrkgrlgc gngsapvinp gentlsvpqi tydhideqgd kknvsfyige pgvrrrlegs
      481 tqemsransf tddidlmsee splpavsnva qlteahrtav kvirrmqyfv arrkfqqark
      541 pydvrdvieq ysqghlnmmv rikelqrrld hslgkpglfl pekgvdkgyy tigarlirle
      601 dkvmqmdqkl ddilnmlqaq vgdqpqaqms kaatspatql qttsdsrq
//
LOCUS       XP_053935157             639 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily KQT member 1 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053935157
VERSION     XP_053935157.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079182.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..639
                     /product="potassium voltage-gated channel subfamily KQT
                     member 1 isoform X2"
                     /calculated_mol_wt=70995
     Region          122..358
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          476..>588
                     /region_name="KCNQ_channel"
                     /note="KCNQ voltage-gated potassium channel; pfam03520"
                     /db_xref="CDD:460954"
     CDS             1..639
                     /gene="LOC104066628"
                     /coded_by="XM_054079182.1:281..2200"
                     /db_xref="GeneID:104066628"
ORIGIN      
        1 mscdssevvg hpiykpceqi qcstsqlssp ngnrksaall kvrgslsnmq yssvaldpet
       61 lenngsgiph speegtkata ltasgvrrac ttkcfhshyl tktstqgdvy nflerpsgwk
      121 cfiyhftvfl lvliclifsv lstiehysef atgtlfwmei vlvvffgaey vvrlwsagcr
      181 skyvgfqgri rfarkpisii dlivvvasii vlsigsngqv fatsairgir flqilrmlhv
      241 drqggtwrll gsvvfihrqe littlyigfl glifssyfvy laekdavded gktgfssyad
      301 alwwgvvtvt tigygdkvpq twigktvasc fsvfaisffa lpagilgsgf alkvqqkqrq
      361 khfnrqipaa asliqtlwrc yaaekscsst atwkiyvtsp vhnpkkppap sspslrkqar
      421 rykrkgrlgc gngsapvinp gentlsvpqi tydhideqgd kknvsfyige pgvrrrlegs
      481 tqemsransf tddidlmsee splpavsnva qlteahrtav kvirrmqyfv arrkfqqark
      541 pydvrdvieq ysqghlnmmv rikelqrrld hslgkpglfl pekgvdkgyy tigarlirle
      601 dkiawcaevl rpdqpqafcs pspspsfhhv aspaggrhg
//
LOCUS       XP_053935166             633 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily KQT member 1 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053935166
VERSION     XP_053935166.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079191.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..633
                     /product="potassium voltage-gated channel subfamily KQT
                     member 1 isoform X3"
                     /calculated_mol_wt=70785
     Region          122..358
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          476..>588
                     /region_name="KCNQ_channel"
                     /note="KCNQ voltage-gated potassium channel; pfam03520"
                     /db_xref="CDD:460954"
     CDS             1..633
                     /gene="LOC104066628"
                     /coded_by="XM_054079191.1:281..2182"
                     /db_xref="GeneID:104066628"
ORIGIN      
        1 mscdssevvg hpiykpceqi qcstsqlssp ngnrksaall kvrgslsnmq yssvaldpet
       61 lenngsgiph speegtkata ltasgvrrac ttkcfhshyl tktstqgdvy nflerpsgwk
      121 cfiyhftvfl lvliclifsv lstiehysef atgtlfwmei vlvvffgaey vvrlwsagcr
      181 skyvgfqgri rfarkpisii dlivvvasii vlsigsngqv fatsairgir flqilrmlhv
      241 drqggtwrll gsvvfihrqe littlyigfl glifssyfvy laekdavded gktgfssyad
      301 alwwgvvtvt tigygdkvpq twigktvasc fsvfaisffa lpagilgsgf alkvqqkqrq
      361 khfnrqipaa asliqtlwrc yaaekscsst atwkiyvtsp vhnpkkppap sspslrkqar
      421 rykrkgrlgc gngsapvinp gentlsvpqi tydhideqgd kknvsfyige pgvrrrlegs
      481 tqemsransf tddidlmsee splpavsnva qlteahrtav kvirrmqyfv arrkfqqark
      541 pydvrdvieq ysqghlnmmv rikelqrrld hslgkpglfl pekgvdkgyy tigarlirle
      601 dktatnsmyr hsqylailrr rkkffggfsi lpq
//
LOCUS       XP_053935171             625 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily KQT member 1 isoform X4
            [Cuculus canorus].
ACCESSION   XP_053935171
VERSION     XP_053935171.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079196.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..625
                     /product="potassium voltage-gated channel subfamily KQT
                     member 1 isoform X4"
                     /calculated_mol_wt=69682
     Region          122..358
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          476..>588
                     /region_name="KCNQ_channel"
                     /note="KCNQ voltage-gated potassium channel; pfam03520"
                     /db_xref="CDD:460954"
     CDS             1..625
                     /gene="LOC104066628"
                     /coded_by="XM_054079196.1:281..2158"
                     /db_xref="GeneID:104066628"
ORIGIN      
        1 mscdssevvg hpiykpceqi qcstsqlssp ngnrksaall kvrgslsnmq yssvaldpet
       61 lenngsgiph speegtkata ltasgvrrac ttkcfhshyl tktstqgdvy nflerpsgwk
      121 cfiyhftvfl lvliclifsv lstiehysef atgtlfwmei vlvvffgaey vvrlwsagcr
      181 skyvgfqgri rfarkpisii dlivvvasii vlsigsngqv fatsairgir flqilrmlhv
      241 drqggtwrll gsvvfihrqe littlyigfl glifssyfvy laekdavded gktgfssyad
      301 alwwgvvtvt tigygdkvpq twigktvasc fsvfaisffa lpagilgsgf alkvqqkqrq
      361 khfnrqipaa asliqtlwrc yaaekscsst atwkiyvtsp vhnpkkppap sspslrkqar
      421 rykrkgrlgc gngsapvinp gentlsvpqi tydhideqgd kknvsfyige pgvrrrlegs
      481 tqemsransf tddidlmsee splpavsnva qlteahrtav kvirrmqyfv arrkfqqark
      541 pydvrdvieq ysqghlnmmv rikelqrrld hslgkpglfl pekgvdkgyy tigarlirle
      601 dktvfintak emcpgdvyka ellei
//
LOCUS       XP_053935172             615 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily KQT member 1 isoform X5
            [Cuculus canorus].
ACCESSION   XP_053935172
VERSION     XP_053935172.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079197.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..615
                     /product="potassium voltage-gated channel subfamily KQT
                     member 1 isoform X5"
                     /calculated_mol_wt=68625
     Region          122..358
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          476..>588
                     /region_name="KCNQ_channel"
                     /note="KCNQ voltage-gated potassium channel; pfam03520"
                     /db_xref="CDD:460954"
     CDS             1..615
                     /gene="LOC104066628"
                     /coded_by="XM_054079197.1:281..2128"
                     /db_xref="GeneID:104066628"
ORIGIN      
        1 mscdssevvg hpiykpceqi qcstsqlssp ngnrksaall kvrgslsnmq yssvaldpet
       61 lenngsgiph speegtkata ltasgvrrac ttkcfhshyl tktstqgdvy nflerpsgwk
      121 cfiyhftvfl lvliclifsv lstiehysef atgtlfwmei vlvvffgaey vvrlwsagcr
      181 skyvgfqgri rfarkpisii dlivvvasii vlsigsngqv fatsairgir flqilrmlhv
      241 drqggtwrll gsvvfihrqe littlyigfl glifssyfvy laekdavded gktgfssyad
      301 alwwgvvtvt tigygdkvpq twigktvasc fsvfaisffa lpagilgsgf alkvqqkqrq
      361 khfnrqipaa asliqtlwrc yaaekscsst atwkiyvtsp vhnpkkppap sspslrkqar
      421 rykrkgrlgc gngsapvinp gentlsvpqi tydhideqgd kknvsfyige pgvrrrlegs
      481 tqemsransf tddidlmsee splpavsnva qlteahrtav kvirrmqyfv arrkfqqark
      541 pydvrdvieq ysqghlnmmv rikelqrrld hslgkpglfl pekgvdkgyy tigarlirle
      601 dkiplllqpv elyqc
//
LOCUS       XP_053935174             523 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily KQT member 1 isoform X6
            [Cuculus canorus].
ACCESSION   XP_053935174
VERSION     XP_053935174.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079199.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..523
                     /product="potassium voltage-gated channel subfamily KQT
                     member 1 isoform X6"
                     /calculated_mol_wt=57827
     Region          122..358
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..523
                     /gene="LOC104066628"
                     /coded_by="XM_054079199.1:281..1852"
                     /db_xref="GeneID:104066628"
ORIGIN      
        1 mscdssevvg hpiykpceqi qcstsqlssp ngnrksaall kvrgslsnmq yssvaldpet
       61 lenngsgiph speegtkata ltasgvrrac ttkcfhshyl tktstqgdvy nflerpsgwk
      121 cfiyhftvfl lvliclifsv lstiehysef atgtlfwmei vlvvffgaey vvrlwsagcr
      181 skyvgfqgri rfarkpisii dlivvvasii vlsigsngqv fatsairgir flqilrmlhv
      241 drqggtwrll gsvvfihrqe littlyigfl glifssyfvy laekdavded gktgfssyad
      301 alwwgvvtvt tigygdkvpq twigktvasc fsvfaisffa lpagilgsgf alkvqqkqrq
      361 khfnrqipaa asliqtlwrc yaaekscsst atwkiyvtsp vhnpkkppap sspslrkqar
      421 rykrkgrlgc gngsapvinp gentlsvpqi tydhideqgd kknvsfyige pgvrrrlegs
      481 tqemsransf tddidlmsee splpavsnva qfffllfhll nte
//
LOCUS       XP_009564260             300 aa            linear   VRT 09-MAR-2023
DEFINITION  regucalcin [Cuculus canorus].
ACCESSION   XP_009564260
VERSION     XP_009564260.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565965.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564260.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..300
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..300
                     /product="regucalcin"
                     /calculated_mol_wt=33255
     Region          18..265
                     /region_name="SGL"
                     /note="SMP-30/Gluconolactonase/LRE-like region; pfam08450"
                     /db_xref="CDD:462480"
     CDS             1..300
                     /gene="LOC104063715"
                     /coded_by="XM_009565965.2:604..1506"
                     /db_xref="GeneID:104063715"
ORIGIN      
        1 msssikiesv vkeknrmgec pvweeresal vyvdinsqkv crwspltnkv qsvsvgarvg
       61 svalrqcggy vialgtrfaf ldwdtqavtt ileveqdkpn nrfndgkvdp kgrffagtma
      121 eerapgvrar gqgalytlfp dhsvvrqldq vdisngldws ldhrtffyid slayavhafs
      181 ydahtgkiac prllyhleke eqmpdgmcid aegklwvaci dggrviridp etgkriqtvr
      241 lptpritscc fggkdysemy vtsaydglde ntlakephag eifkitglgv kgipqnfyaa
//
LOCUS       XP_053935196             222 aa            linear   VRT 09-MAR-2023
DEFINITION  claudin-8-like [Cuculus canorus].
ACCESSION   XP_053935196
VERSION     XP_053935196.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079221.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..222
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..222
                     /product="claudin-8-like"
                     /calculated_mol_wt=24284
     Region          6..182
                     /region_name="PMP22_Claudin"
                     /note="PMP-22/EMP/MP20/Claudin family; cl21598"
                     /db_xref="CDD:473919"
     CDS             1..222
                     /gene="LOC104064796"
                     /coded_by="XM_054079221.1:722..1390"
                     /db_xref="GeneID:104064796"
ORIGIN      
        1 maccvlqitg lifggigmig tmaatvmpqw rvsayidgni vvfetiwegl wmdcisqlgi
       61 rlqckfydsv lalppplevf ralmciamil siisflmaiv gvkythgtkk dpqaisvfil
      121 aagvafllta vlvlipvswt ggsiihdfyd pevpiplkre lgaalyvgwv stallitagv
      181 mycsfwcwad tssksrypsl srhklhkpdf agkpflsmha yv
//
LOCUS       XP_009566685             584 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-2 receptor subunit beta [Cuculus canorus].
ACCESSION   XP_009566685
VERSION     XP_009566685.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568390.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566685.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..584
                     /product="interleukin-2 receptor subunit beta"
                     /calculated_mol_wt=65584
     Region          30..134
                     /region_name="IL2RB_N1"
                     /note="Interleukin-2 receptor subunit beta N-terminal
                     domain 1; pfam18707"
                     /db_xref="CDD:465844"
     Region          146..226
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; smart00060"
                     /db_xref="CDD:214495"
     Site            order(234..235,237..238)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..584
                     /gene="IL2RB"
                     /coded_by="XM_009568390.2:298..2052"
                     /db_xref="GeneID:104065861"
ORIGIN      
        1 mkpsllllch iwlfslmpls wtldsaqgas slncwydsra tlfcdwnpsr dlveapchle
       61 ilsnlalcdr lfplpekfke hcelpkaehm tglrrciktf sknsntqcft tadrlkmsvh
      121 cqigdkktip vqiedfspla niklrppgnl qlarktenty nltwslniss hyldgereyq
      181 vryrttsqsw eearnftivq dqmwvvfesl spdlkyeaav rarpgassth kgvwsdwset
      241 ilwrtpanqt sqpflpaliv stcifviigt aflinlrnlk wfkkilkihi pdpekffppl
      301 vsvhggdiqk wlsspfstss ycvnsttpei smlevmqknd qesqfllskg tlmpepplet
      361 sghsvsscft nqgyfffdlp nsfeiepcqv yftyepftqe gcgsedgkpy htlpspdlct
      421 vaedmpvlsy nflqcnrvtq gfqnsffvee tegeakwdta isgalqsseg tsprpvlkqd
      481 knvtdkadlq paealcqlds dfpdppdlhd gdviditegg mktgpavvpy tpaahatssf
      541 sqtpplrqtq nedpcgtafs nqvpntgayl slkdlqsqys hrsv
//
LOCUS       XP_009564690             212 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related protein Rab-38 [Cuculus canorus].
ACCESSION   XP_009564690
VERSION     XP_009564690.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566395.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..212
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..212
                     /product="ras-related protein Rab-38"
                     /calculated_mol_wt=23794
     Region          11..209
                     /region_name="Rab32_Rab38"
                     /note="Rab GTPase families 18 (Rab18) and 32 (Rab32);
                     cd04107"
                     /db_xref="CDD:206692"
     Site            11..12
                     /site_type="other"
                     /note="Rab subfamily motif 1 (RabSF1)"
                     /db_xref="CDD:206692"
     Site            17..24
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206692"
     Site            order(19..25,35..36,41..42,69,128..129,131,160..162)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206692"
     Site            order(25..36,40..41)
                     /site_type="other"
                     /note="Rab subfamily motif 2 (RabSF2)"
                     /db_xref="CDD:206692"
     Site            order(35,40..48)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206692"
     Site            order(40,44..51,59,61)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206692"
     Site            42
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206692"
     Site            order(43,45..47,63,65,72..73,76,80,82..85,178)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206692"
     Site            order(43..44,46,65..66,73,75,77..79)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206692"
     Site            43..47
                     /site_type="other"
                     /note="Rab family motif 1 (RabF1)"
                     /db_xref="CDD:206692"
     Site            61..65
                     /site_type="other"
                     /note="Rab family motif 2 (RabF2)"
                     /db_xref="CDD:206692"
     Site            66..69
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206692"
     Site            order(69,71..81)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206692"
     Site            72..77
                     /site_type="other"
                     /note="Rab family motif 3 (RabF3)"
                     /db_xref="CDD:206692"
     Site            80..84
                     /site_type="other"
                     /note="Rab family motif 4 (RabF4)"
                     /db_xref="CDD:206692"
     Site            89..94
                     /site_type="other"
                     /note="Rab family motif 5 (RabF5)"
                     /db_xref="CDD:206692"
     Site            121..125
                     /site_type="other"
                     /note="Rab subfamily motif 3 (RabSF3)"
                     /db_xref="CDD:206692"
     Site            128..131
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206692"
     Site            160..162
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206692"
     Site            176..178
                     /site_type="other"
                     /note="Rab subfamily motif 4 (RabSF4)"
                     /db_xref="CDD:206692"
     Site            207..209
                     /site_type="other"
                     /note="putative lipid modification site [posttranslational
                     modification]"
                     /db_xref="CDD:206692"
     CDS             1..212
                     /gene="RAB38"
                     /coded_by="XM_009566395.2:76..714"
                     /db_xref="GeneID:104064102"
ORIGIN      
        1 mqkhsqkehl ykllvigdlg vgktsiikry vhqnfsphyr atigvdfalk vlswdaetvv
       61 rlqlwdiagq erfgnmtrvy yreamgafiv fdvtrpatfe avtkwkedld sklvlpngkp
      121 vpavllankc dqgidvlmnn gikmdqfckd ngfvgwfets akenininea srclvkhiia
      181 sesdpvqsie pdivkphlns skifscsscf ks
//
LOCUS       XP_009567227             852 aa            linear   VRT 09-MAR-2023
DEFINITION  P protein [Cuculus canorus].
ACCESSION   XP_009567227
VERSION     XP_009567227.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568932.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567227.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..852
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..852
                     /product="P protein"
                     /calculated_mol_wt=95362
     Region          351..842
                     /region_name="P_permease"
                     /note="Permease P (pink-eyed dilution). Mutations in the
                     human melanosomal P gene were responsible for classic
                     phenotype of oculocutaneous albinism type 2 (OCA2).
                     Although the precise function of the P protein is unknown,
                     it was predicted to regulate the...; cd01116"
                     /db_xref="CDD:238536"
     Site            order(355..358,365..378,398..415,438..454,456..473,
                     478..501,528..542,636..648,664..678,690..708,737..752,
                     782..801,827..839)
                     /site_type="other"
                     /note="transmembrane helices"
                     /db_xref="CDD:238536"
     CDS             1..852
                     /gene="OCA2"
                     /coded_by="XM_009568932.2:264..2822"
                     /db_xref="GeneID:104066346"
ORIGIN      
        1 mhldnkddst vsrqqemeln qtavhqtsls trgavkpmtr scselwllne yhgmvaslge
       61 pqslcgrsav eengcislqk dftpvpmqgr hhfnfsklfg srskntgfte ktpllkvsse
      121 englqcmdlh npdfttddds wdtssaefeq rfqlgneias lsrsasseky eildslhakf
      181 ylskmrcclk flkvsglfif vvvcsilfgi ypdqgvswqm lavsplesfs mnltdfhdsa
      241 llkldiggpf vadvveqqte eyivvqisqa edsvsrrrrq qqgvynwslp lssrrnhqvi
      301 ttrtfqmlnr gtifiniqav lqepgnipls vkhqylhani eaqvtiasii lvgvyvliil
      361 eivhrtlaam lgslaalaal atvgerpsmi kvvewidyet lsllfgmmvl vaifsetgff
      421 dycavkayrf srgkvwamit llcliaails afldnvttml lftpvtirlc evlnldprhv
      481 liaeviftni ggaatavgdp pnviivskqe lrnkgldfaa ftghmfvgic lvvlvsfpfl
      541 rllywnkkly nkepseivel kheiyvwrlt aqrinpasre etavkcllmq kvltlemllr
      601 kklrtfhrqi sqedknwetn iqelqkkhki tdkillikcl avlgcvilmf flnsfvpgiy
      661 ldlgwiaifg aiwllvladi hdfemilnrv ewatllffaa lfvlmealah lhlidyigeq
      721 tallikvvpe dqrlavaiil vlwvsalass vidnipftat mipvllnlsk dpdvnlpmkp
      781 lifslamgac lggngtliga sanvvcagia eqhgygfsfm effrlgfpmm ivsctigmcy
      841 llvahvvlgw ns
//
LOCUS       XP_053935234             852 aa            linear   VRT 09-MAR-2023
DEFINITION  P protein [Cuculus canorus].
ACCESSION   XP_053935234
VERSION     XP_053935234.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079259.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..852
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..852
                     /product="P protein"
                     /calculated_mol_wt=95362
     Region          351..842
                     /region_name="P_permease"
                     /note="Permease P (pink-eyed dilution). Mutations in the
                     human melanosomal P gene were responsible for classic
                     phenotype of oculocutaneous albinism type 2 (OCA2).
                     Although the precise function of the P protein is unknown,
                     it was predicted to regulate the...; cd01116"
                     /db_xref="CDD:238536"
     Site            order(355..358,365..378,398..415,438..454,456..473,
                     478..501,528..542,636..648,664..678,690..708,737..752,
                     782..801,827..839)
                     /site_type="other"
                     /note="transmembrane helices"
                     /db_xref="CDD:238536"
     CDS             1..852
                     /gene="OCA2"
                     /coded_by="XM_054079259.1:103..2661"
                     /db_xref="GeneID:104066346"
ORIGIN      
        1 mhldnkddst vsrqqemeln qtavhqtsls trgavkpmtr scselwllne yhgmvaslge
       61 pqslcgrsav eengcislqk dftpvpmqgr hhfnfsklfg srskntgfte ktpllkvsse
      121 englqcmdlh npdfttddds wdtssaefeq rfqlgneias lsrsasseky eildslhakf
      181 ylskmrcclk flkvsglfif vvvcsilfgi ypdqgvswqm lavsplesfs mnltdfhdsa
      241 llkldiggpf vadvveqqte eyivvqisqa edsvsrrrrq qqgvynwslp lssrrnhqvi
      301 ttrtfqmlnr gtifiniqav lqepgnipls vkhqylhani eaqvtiasii lvgvyvliil
      361 eivhrtlaam lgslaalaal atvgerpsmi kvvewidyet lsllfgmmvl vaifsetgff
      421 dycavkayrf srgkvwamit llcliaails afldnvttml lftpvtirlc evlnldprhv
      481 liaeviftni ggaatavgdp pnviivskqe lrnkgldfaa ftghmfvgic lvvlvsfpfl
      541 rllywnkkly nkepseivel kheiyvwrlt aqrinpasre etavkcllmq kvltlemllr
      601 kklrtfhrqi sqedknwetn iqelqkkhki tdkillikcl avlgcvilmf flnsfvpgiy
      661 ldlgwiaifg aiwllvladi hdfemilnrv ewatllffaa lfvlmealah lhlidyigeq
      721 tallikvvpe dqrlavaiil vlwvsalass vidnipftat mipvllnlsk dpdvnlpmkp
      781 lifslamgac lggngtliga sanvvcagia eqhgygfsfm effrlgfpmm ivsctigmcy
      841 llvahvvlgw ns
//
LOCUS       XP_053935245             852 aa            linear   VRT 09-MAR-2023
DEFINITION  P protein [Cuculus canorus].
ACCESSION   XP_053935245
VERSION     XP_053935245.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079270.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..852
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..852
                     /product="P protein"
                     /calculated_mol_wt=95362
     Region          351..842
                     /region_name="P_permease"
                     /note="Permease P (pink-eyed dilution). Mutations in the
                     human melanosomal P gene were responsible for classic
                     phenotype of oculocutaneous albinism type 2 (OCA2).
                     Although the precise function of the P protein is unknown,
                     it was predicted to regulate the...; cd01116"
                     /db_xref="CDD:238536"
     Site            order(355..358,365..378,398..415,438..454,456..473,
                     478..501,528..542,636..648,664..678,690..708,737..752,
                     782..801,827..839)
                     /site_type="other"
                     /note="transmembrane helices"
                     /db_xref="CDD:238536"
     CDS             1..852
                     /gene="OCA2"
                     /coded_by="XM_054079270.1:49..2607"
                     /db_xref="GeneID:104066346"
ORIGIN      
        1 mhldnkddst vsrqqemeln qtavhqtsls trgavkpmtr scselwllne yhgmvaslge
       61 pqslcgrsav eengcislqk dftpvpmqgr hhfnfsklfg srskntgfte ktpllkvsse
      121 englqcmdlh npdfttddds wdtssaefeq rfqlgneias lsrsasseky eildslhakf
      181 ylskmrcclk flkvsglfif vvvcsilfgi ypdqgvswqm lavsplesfs mnltdfhdsa
      241 llkldiggpf vadvveqqte eyivvqisqa edsvsrrrrq qqgvynwslp lssrrnhqvi
      301 ttrtfqmlnr gtifiniqav lqepgnipls vkhqylhani eaqvtiasii lvgvyvliil
      361 eivhrtlaam lgslaalaal atvgerpsmi kvvewidyet lsllfgmmvl vaifsetgff
      421 dycavkayrf srgkvwamit llcliaails afldnvttml lftpvtirlc evlnldprhv
      481 liaeviftni ggaatavgdp pnviivskqe lrnkgldfaa ftghmfvgic lvvlvsfpfl
      541 rllywnkkly nkepseivel kheiyvwrlt aqrinpasre etavkcllmq kvltlemllr
      601 kklrtfhrqi sqedknwetn iqelqkkhki tdkillikcl avlgcvilmf flnsfvpgiy
      661 ldlgwiaifg aiwllvladi hdfemilnrv ewatllffaa lfvlmealah lhlidyigeq
      721 tallikvvpe dqrlavaiil vlwvsalass vidnipftat mipvllnlsk dpdvnlpmkp
      781 lifslamgac lggngtliga sanvvcagia eqhgygfsfm effrlgfpmm ivsctigmcy
      841 llvahvvlgw ns
//
LOCUS       XP_053935253             852 aa            linear   VRT 09-MAR-2023
DEFINITION  P protein [Cuculus canorus].
ACCESSION   XP_053935253
VERSION     XP_053935253.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079278.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..852
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..852
                     /product="P protein"
                     /calculated_mol_wt=95362
     Region          351..842
                     /region_name="P_permease"
                     /note="Permease P (pink-eyed dilution). Mutations in the
                     human melanosomal P gene were responsible for classic
                     phenotype of oculocutaneous albinism type 2 (OCA2).
                     Although the precise function of the P protein is unknown,
                     it was predicted to regulate the...; cd01116"
                     /db_xref="CDD:238536"
     Site            order(355..358,365..378,398..415,438..454,456..473,
                     478..501,528..542,636..648,664..678,690..708,737..752,
                     782..801,827..839)
                     /site_type="other"
                     /note="transmembrane helices"
                     /db_xref="CDD:238536"
     CDS             1..852
                     /gene="OCA2"
                     /coded_by="XM_054079278.1:107..2665"
                     /db_xref="GeneID:104066346"
ORIGIN      
        1 mhldnkddst vsrqqemeln qtavhqtsls trgavkpmtr scselwllne yhgmvaslge
       61 pqslcgrsav eengcislqk dftpvpmqgr hhfnfsklfg srskntgfte ktpllkvsse
      121 englqcmdlh npdfttddds wdtssaefeq rfqlgneias lsrsasseky eildslhakf
      181 ylskmrcclk flkvsglfif vvvcsilfgi ypdqgvswqm lavsplesfs mnltdfhdsa
      241 llkldiggpf vadvveqqte eyivvqisqa edsvsrrrrq qqgvynwslp lssrrnhqvi
      301 ttrtfqmlnr gtifiniqav lqepgnipls vkhqylhani eaqvtiasii lvgvyvliil
      361 eivhrtlaam lgslaalaal atvgerpsmi kvvewidyet lsllfgmmvl vaifsetgff
      421 dycavkayrf srgkvwamit llcliaails afldnvttml lftpvtirlc evlnldprhv
      481 liaeviftni ggaatavgdp pnviivskqe lrnkgldfaa ftghmfvgic lvvlvsfpfl
      541 rllywnkkly nkepseivel kheiyvwrlt aqrinpasre etavkcllmq kvltlemllr
      601 kklrtfhrqi sqedknwetn iqelqkkhki tdkillikcl avlgcvilmf flnsfvpgiy
      661 ldlgwiaifg aiwllvladi hdfemilnrv ewatllffaa lfvlmealah lhlidyigeq
      721 tallikvvpe dqrlavaiil vlwvsalass vidnipftat mipvllnlsk dpdvnlpmkp
      781 lifslamgac lggngtliga sanvvcagia eqhgygfsfm effrlgfpmm ivsctigmcy
      841 llvahvvlgw ns
//
LOCUS       XP_053935264             939 aa            linear   VRT 09-MAR-2023
DEFINITION  cGMP-dependent 3',5'-cyclic phosphodiesterase [Cuculus canorus].
ACCESSION   XP_053935264
VERSION     XP_053935264.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079289.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..939
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..939
                     /product="cGMP-dependent 3',5'-cyclic phosphodiesterase"
                     /calculated_mol_wt=105032
     Region          243..390
                     /region_name="GAF"
                     /note="Domain present in phytochromes and cGMP-specific
                     phosphodiesterases; smart00065"
                     /db_xref="CDD:214500"
     Region          412..563
                     /region_name="GAF"
                     /note="Domain present in phytochromes and cGMP-specific
                     phosphodiesterases; smart00065"
                     /db_xref="CDD:214500"
     Region          660..893
                     /region_name="PDEase_I"
                     /note="3'5'-cyclic nucleotide phosphodiesterase;
                     pfam00233"
                     /db_xref="CDD:459723"
     CDS             1..939
                     /gene="PDE2A"
                     /coded_by="XM_054079289.1:132..2951"
                     /db_xref="GeneID:104064410"
ORIGIN      
        1 mgqgcghsil crsqpyqaaa sdlrgpqvfl rggeggrggg gggaealqea llalgaalda
       61 gglrdalrrg legllprleq lhlylldgdt rlschdpphe lpqhgklrda vrrqkrlecg
      121 gllpsdlpds hlgdlvapia pgtqvliipv vdkesgtvvc vilvhcgqls dadeqnlrsl
      181 erhtvvafkr lqalqklqpw pqvslstsss qtslakaekv pesgynalds kilqlcgely
      241 dldaaslqlk vinylreetq slscclllvs ednhqlfcqv vgdrvleeei sfsltfgrlg
      301 qvvedkksit lkdiseeeqk qlgtmlgcev tsmlgvpvis ratsqvvala cafnklsges
      361 ysaadehkiq hcfcytstvl tstlafqkeq klkcecqall qvaknlfthl ddvsvllqei
      421 itearnlsna eicsvflldr pshelvakvf dggvvddesy eiripadqgi aghvattgki
      481 lnikdayahp lfyrgvddst gfrtrnilcf pikneshevi gvaelvnkin gpwfskfded
      541 latafsiycg isiahsllyk kvneaqyrsh lanemmmyhm kvsddeyskl lsegiqpvst
      601 idpnfssfty tprslpeddt smailsmlqd mnfintykmd rqtltrfclm vkkgyrdppy
      661 hnwmhafsvs hfcyllyknl elvnyledie ifalfiscmc hdldhrgtnn sfqvasksvl
      721 aalyssegsv merhhfaqai ailnsqgcni fdhfsrkdyq rmldlmrdii latdlahhlr
      781 ifkdlqkmae vgydpknkqh hnlllcllmt scdlsdqtkg wkttrkiael iykeffsqgd
      841 lekamgnrpl emmdrekayi pelqisfmeh iampiykllq dlfpkasely ervatnrqhw
      901 tkvshkftir glpsnnsldf ldedydpegt daqlngcve
//
LOCUS       XP_053935273             418 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-arrestin-1 [Cuculus canorus].
ACCESSION   XP_053935273
VERSION     XP_053935273.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079298.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..418
                     /product="beta-arrestin-1"
                     /calculated_mol_wt=46830
     Region          18..174
                     /region_name="Arrestin_N"
                     /note="Arrestin (or S-antigen), N-terminal domain;
                     cl22903"
                     /db_xref="CDD:451447"
     Region          193..356
                     /region_name="Arrestin_C"
                     /note="Arrestin (or S-antigen), C-terminal domain;
                     smart01017"
                     /db_xref="CDD:214976"
     CDS             1..418
                     /gene="LOC128853581"
                     /coded_by="XM_054079298.1:67..1323"
                     /db_xref="GeneID:128853581"
ORIGIN      
        1 mgdkgtrvfk kaspngkltv ylgkrdfvdh idvvdpvdgv vlvdpeylke rkvfvtltca
       61 frygredldv lgltfrkdlf vanaqafppv peekkaltrl qerllkklgd nafpftfelp
      121 rslpcsvtlq pgpedtgkac gvdyevkafc aenleekihk rnsvrlvirk vqyaperpgp
      181 qpmaettrqf lmsdkplhle asldkeiyyh gepisvnvhv tnntnktvkk ikisvrqyad
      241 iclfntaqyk cpvavedadd vvapsstfck vytltpflan nrekrglald gklkhedtnl
      301 asstllrdga nkeilgiivs ykvkvklvvs rggllgdlas sdvavelpft lmhpkpkeep
      361 phrdapenda pidtnlield tndddivfed farqrlkgvk ddkededert hspqlndr
//
LOCUS       XP_053935287             384 aa            linear   VRT 09-MAR-2023
DEFINITION  WD repeat-containing protein 73 isoform X1 [Cuculus canorus].
ACCESSION   XP_053935287
VERSION     XP_053935287.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079312.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..384
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..384
                     /product="WD repeat-containing protein 73 isoform X1"
                     /calculated_mol_wt=41160
     Region          89..128
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          136..177
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          184..221
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          232..279
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          286..311
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..384
                     /gene="WDR73"
                     /coded_by="XM_054079312.1:129..1283"
                     /db_xref="GeneID:104062045"
ORIGIN      
        1 meeeeeeewl llslrlyedl hsfelqtptr vlewgpetsl ciagygppgg nnevlqllpp
       61 pplqateaqg lcperdfkve rggfsdrpiy nlkhvpntsl lvtsgppdgs vqlwqlsged
      121 sdvikavgsi paeegfgelw akiatasata pwvlhgsrld svritevesr ssvyaaasns
      181 ssaelsalaf ldtttvvlcc aagqlcladt rqpprplevt sipaatsger wgmavrcgpq
      241 gsngssqpia rlssgghlvl tdlrrssepl avvkckvpsp ktgaeflcvs wapalencia
      301 vsgldgsvrv yatqgwdgsg reaeplfvhk grafgawdga edpplvtvha whpqkprtvl
      361 saatdgsldv wdwvrprerw egha
//
LOCUS       XP_053935297             338 aa            linear   VRT 09-MAR-2023
DEFINITION  WD repeat-containing protein 73 isoform X2 [Cuculus canorus].
ACCESSION   XP_053935297
VERSION     XP_053935297.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079322.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..338
                     /product="WD repeat-containing protein 73 isoform X2"
                     /calculated_mol_wt=36058
     CDS             1..338
                     /gene="WDR73"
                     /coded_by="XM_054079322.1:133..1149"
                     /db_xref="GeneID:104062045"
ORIGIN      
        1 mrictasnck hrpecwsgar rpasaspgmd llvgtmrsfs fcrhhrcrrr rpsllvtsgp
       61 pdgsvqlwql sgedsdvika vgsipaeegf gelwakiata satapwvlhg srldsvrite
      121 vesrssvyaa asnsssaels alafldtttv vlccaagqlc ladtrqpprp levtsipaat
      181 sgerwgmavr cgpqgsngss qpiarlssgg hlvltdlrrs seplavvkck vpspktgaef
      241 lcvswapale nciavsgldg svrvyatqgw dgsgreaepl fvhkgrafga wdgaedpplv
      301 tvhawhpqkp rtvlsaatdg sldvwdwvrp rerwegha
//
LOCUS       XP_053935310             266 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: START domain-containing protein 10 [Cuculus
            canorus].
ACCESSION   XP_053935310
VERSION     XP_053935310.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079335.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 4 indels
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..266
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..266
                     /product="LOW QUALITY PROTEIN: START domain-containing
                     protein 10"
                     /calculated_mol_wt=29655
     Region          5..225
                     /region_name="START_STARD10-like"
                     /note="Lipid-binding START domain of mammalian STARD10 and
                     related proteins; cd08871"
                     /db_xref="CDD:176880"
     Site            order(30..31,38,52,54,66,70,76,79..80,82..83,102,104..107,
                     109,112,114,116,131,148,150..153,155,167,169,171,173,175,
                     177,184,186..188,190..192,195..196,199)
                     /site_type="other"
                     /note="putative lipid binding site [chemical binding]"
                     /db_xref="CDD:176880"
     CDS             1..266
                     /gene="STARD10"
                     /coded_by="XM_054079335.1:123..923"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 4 bases in 3 codons;
                     deleted 1 base in 1 codon"
                     /db_xref="GeneID:128853583"
ORIGIN      
        1 msrasvrvpd dgdfgafrae ceedhgwtlt fskgglkvwv qlledhptlp kvkcrmecgd
       61 vsadvlydvl hdtdyrrqwd pnvietfdia rvtanadlgy yswrcpkplk nrdvltlrsw
      121 lptdndyiim nysvkhpkfp prkdmvravs iqtgylvqrt geksstityv ahvdpkgslp
      181 kwvvnkssqf lapkalkklh kxclkyptwk shhnptfnrx alpeqnllpt vplstlavqx
      241 aeslenides alaeakeegs dddggn
//
LOCUS       XP_053935363             304 aa            linear   VRT 09-MAR-2023
DEFINITION  uroplakin-1b isoform X1 [Cuculus canorus].
ACCESSION   XP_053935363
VERSION     XP_053935363.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079388.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..304
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..304
                     /product="uroplakin-1b isoform X1"
                     /calculated_mol_wt=33418
     Region          58..>205
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          162..274
                     /region_name="uroplakin_I_like_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), uroplakin_I_like family.
                     Tetraspanins are trans-membrane proteins with 4
                     trans-membrane segments. Both the N- and C-termini lie on
                     the intracellular side of the membrane. This alignment...;
                     cd03156"
                     /db_xref="CDD:239409"
     Site            order(164,169,173,175..176,179,193,196..197,200..201)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239409"
     CDS             1..304
                     /gene="UPK1B"
                     /coded_by="XM_054079388.1:4..918"
                     /db_xref="GeneID:104055801"
ORIGIN      
        1 mtaaapdqge akvsqvlpar eektagreas tcagwtahiq gcikmaksdd gmrilqgllv
       61 fgnviigmcg ialtaeciff vsdphglypl leatenddiy aaawigifvg falfalsilg
      121 iigvikssrt lllvyiilml ityafemasc itaathrdfl tpnlflkqml eryqksetdn
      181 nndkwmsegv tktwnklmlq nqccgvqgps dwqeytsafr vthsdadfpw prnccvldar
      241 gspvnldgck lgvpgyynsn gcydaisgpl nthawgvawf gfailcwtfc vllgtmfyws
      301 rigy
//
LOCUS       XP_009555276             260 aa            linear   VRT 09-MAR-2023
DEFINITION  uroplakin-1b isoform X2 [Cuculus canorus].
ACCESSION   XP_009555276
VERSION     XP_009555276.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556981.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..260
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..260
                     /product="uroplakin-1b isoform X2"
                     /calculated_mol_wt=28866
     Region          14..>161
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          118..230
                     /region_name="uroplakin_I_like_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), uroplakin_I_like family.
                     Tetraspanins are trans-membrane proteins with 4
                     trans-membrane segments. Both the N- and C-termini lie on
                     the intracellular side of the membrane. This alignment...;
                     cd03156"
                     /db_xref="CDD:239409"
     Site            order(120,125,129,131..132,135,149,152..153,156..157)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239409"
     CDS             1..260
                     /gene="UPK1B"
                     /coded_by="XM_009556981.2:31..813"
                     /db_xref="GeneID:104055801"
ORIGIN      
        1 maksddgmri lqgllvfgnv iigmcgialt aeciffvsdp hglyplleat enddiyaaaw
       61 igifvgfalf alsilgiigv ikssrtlllv yiilmlitya femascitaa thrdfltpnl
      121 flkqmleryq ksetdnnndk wmsegvtktw nklmlqnqcc gvqgpsdwqe ytsafrvths
      181 dadfpwprnc cvldargspv nldgcklgvp gyynsngcyd aisgplntha wgvawfgfai
      241 lcwtfcvllg tmfywsrigy
//
LOCUS       XP_053935380             260 aa            linear   VRT 09-MAR-2023
DEFINITION  uroplakin-1b isoform X2 [Cuculus canorus].
ACCESSION   XP_053935380
VERSION     XP_053935380.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079405.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..260
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..260
                     /product="uroplakin-1b isoform X2"
                     /calculated_mol_wt=28866
     Region          14..>161
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          118..230
                     /region_name="uroplakin_I_like_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), uroplakin_I_like family.
                     Tetraspanins are trans-membrane proteins with 4
                     trans-membrane segments. Both the N- and C-termini lie on
                     the intracellular side of the membrane. This alignment...;
                     cd03156"
                     /db_xref="CDD:239409"
     Site            order(120,125,129,131..132,135,149,152..153,156..157)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239409"
     CDS             1..260
                     /gene="UPK1B"
                     /coded_by="XM_054079405.1:150..932"
                     /db_xref="GeneID:104055801"
ORIGIN      
        1 maksddgmri lqgllvfgnv iigmcgialt aeciffvsdp hglyplleat enddiyaaaw
       61 igifvgfalf alsilgiigv ikssrtlllv yiilmlitya femascitaa thrdfltpnl
      121 flkqmleryq ksetdnnndk wmsegvtktw nklmlqnqcc gvqgpsdwqe ytsafrvths
      181 dadfpwprnc cvldargspv nldgcklgvp gyynsngcyd aisgplntha wgvawfgfai
      241 lcwtfcvllg tmfywsrigy
//
LOCUS       XP_053935387             260 aa            linear   VRT 09-MAR-2023
DEFINITION  uroplakin-1b isoform X2 [Cuculus canorus].
ACCESSION   XP_053935387
VERSION     XP_053935387.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079412.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..260
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..260
                     /product="uroplakin-1b isoform X2"
                     /calculated_mol_wt=28866
     Region          14..>161
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          118..230
                     /region_name="uroplakin_I_like_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), uroplakin_I_like family.
                     Tetraspanins are trans-membrane proteins with 4
                     trans-membrane segments. Both the N- and C-termini lie on
                     the intracellular side of the membrane. This alignment...;
                     cd03156"
                     /db_xref="CDD:239409"
     Site            order(120,125,129,131..132,135,149,152..153,156..157)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239409"
     CDS             1..260
                     /gene="UPK1B"
                     /coded_by="XM_054079412.1:31..813"
                     /db_xref="GeneID:104055801"
ORIGIN      
        1 maksddgmri lqgllvfgnv iigmcgialt aeciffvsdp hglyplleat enddiyaaaw
       61 igifvgfalf alsilgiigv ikssrtlllv yiilmlitya femascitaa thrdfltpnl
      121 flkqmleryq ksetdnnndk wmsegvtktw nklmlqnqcc gvqgpsdwqe ytsafrvths
      181 dadfpwprnc cvldargspv nldgcklgvp gyynsngcyd aisgplntha wgvawfgfai
      241 lcwtfcvllg tmfywsrigy
//
LOCUS       XP_053935395             260 aa            linear   VRT 09-MAR-2023
DEFINITION  uroplakin-1b isoform X2 [Cuculus canorus].
ACCESSION   XP_053935395
VERSION     XP_053935395.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079420.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..260
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..260
                     /product="uroplakin-1b isoform X2"
                     /calculated_mol_wt=28866
     Region          14..>161
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          118..230
                     /region_name="uroplakin_I_like_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), uroplakin_I_like family.
                     Tetraspanins are trans-membrane proteins with 4
                     trans-membrane segments. Both the N- and C-termini lie on
                     the intracellular side of the membrane. This alignment...;
                     cd03156"
                     /db_xref="CDD:239409"
     Site            order(120,125,129,131..132,135,149,152..153,156..157)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239409"
     CDS             1..260
                     /gene="UPK1B"
                     /coded_by="XM_054079420.1:33..815"
                     /db_xref="GeneID:104055801"
ORIGIN      
        1 maksddgmri lqgllvfgnv iigmcgialt aeciffvsdp hglyplleat enddiyaaaw
       61 igifvgfalf alsilgiigv ikssrtlllv yiilmlitya femascitaa thrdfltpnl
      121 flkqmleryq ksetdnnndk wmsegvtktw nklmlqnqcc gvqgpsdwqe ytsafrvths
      181 dadfpwprnc cvldargspv nldgcklgvp gyynsngcyd aisgplntha wgvawfgfai
      241 lcwtfcvllg tmfywsrigy
//
LOCUS       XP_053935407            2278 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: nucleolar pre-ribosomal-associated protein 1
            [Cuculus canorus].
ACCESSION   XP_053935407
VERSION     XP_053935407.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079432.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2278
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2278
                     /product="LOW QUALITY PROTEIN: nucleolar
                     pre-ribosomal-associated protein 1"
                     /calculated_mol_wt=260422
     Region          69..386
                     /region_name="Npa1"
                     /note="Ribosome 60S biogenesis N-terminal; pfam11707"
                     /db_xref="CDD:463325"
     Region          1668..1857
                     /region_name="NopRA1"
                     /note="Nucleolar pre-ribosomal-associated protein 1;
                     pfam16201"
                     /db_xref="CDD:465063"
     CDS             1..2278
                     /gene="URB1"
                     /coded_by="XM_054079432.1:20..6856"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /db_xref="GeneID:104064765"
ORIGIN      
        1 maaappaakr prreqreeqe fngarfkall rdpgtaakgl etfvsiaktl pspevydvve
       61 gyikismeca eifklldger kpenemllif qaleaillrt asdlshfsav gmnivkklih
      121 symrvvyaal yseyhrmsra cltmlsamva qgpdsardvf shfdfnnkfl pgllkkrckk
      181 ggpdvrmayi qfalsfliag dnailtqvle lkdffpdilr seikedkvst inlllstlrt
      241 klvqnknitk tqkvrfftae mlihiaslyr wngitdvspe dlkvtqgsee vgkmmvrelv
      301 hnflmdlccs lkhgitfydp slgtsgkggn vvllrfllgl ktateddmva dlmvnilkvc
      361 pdllnryfke ttysfvprlk sawmdnlkll kkiyeaqpei snsfktsefi plprllsvvm
      421 vttvpavcnk imftqglnlp stvvrhsils llsmvlkrvl knieyclnee twqrseiytm
      481 smmqefvqly reaiskllpd mnnivaawqs llkqgrehpd gqeekrgsda kavsetaeaa
      541 eqhgsddaet lflkaallqv iclyqkvvph lvarsnfdfs kllkgivsek glreevppvl
      601 qhhilkvale lpankfawfr vqgvsetekm sgeksvfyll mkmfvtshhs hlkistkkli
      661 ikvlrdsgvf eytwkelsvw lehldntked kkeaviqfle rillklvtnp ypytdkaadl
      721 vqeasmlqvn mskqesdsas ipmshiddvl dmvdvlmegs dgldeetgfa lnedmiiqtf
      781 pfsavvpaal earnmlllqa engtgahive ylvavftdll hsqreplalc lmlqhydkdl
      841 qslkvskypq lyqfnqyykl wipqqsqesv fkkpkvicke savaldsvft illkkayerg
      901 snallesdiq tklrdlasql ppqqlslgvr hvllylkstv enfgslskts gpqlvdlyvd
      961 llssllcrgn qieldyqqkr eehqtqsdlf mdeesliaee ssnnktledt lmlifrhptl
     1021 eswflaleqr slpqhslnpv tvkllsahln sgvlqllkvg apmlqsmdqk hmllkyfeai
     1081 tksvlkelra agkdrsqvst kkshqmeale elhrymaaae lkeitltmlr lpemsliaqk
     1141 sekspkkgkq lsfygqilvq lliehyqrqp qqgelllste hikalgilms vsasndlekv
     1201 flqalqsepi lahaisvevh vhclnqrset slaivgmlmk hcrthllqfe lwclssatgk
     1261 nlrtnmesfl plinlylqcr dqydftrpsa vvsavipvlr kalwkdlcgv vqdtevshet
     1321 tvklqvlskl lpsseskglr nlidqlpaal ekaenneswi vadaisrvle nsgelhswrr
     1381 rllpacmkgl ivmynsskde skqeversvl mrleellcfv eevdpddwys fvkaglkyry
     1441 rdeaflkvln taiqllykke sslsqrllkl sklhmmvtqh slflsailrs reedgtnsqt
     1501 realvdillt vvklapsvce sshlamllga ygatlstidq killllqlye knnqslinsr
     1561 illwgpaave hhktckslgk slwqqpsmee ilclldrekm mktilsypqh rrllssqfqd
     1621 iqeslyrdes ikslddfydp cfllqlfsel trpecvvach kfvevnalgl tvaalssyds
     1681 nmraaayfvl asfrshlega rfreknqlly lldavqngig qpnlrftfsl tlyiarvaqq
     1741 ilkpeehmyi kvnrfllshq yldlrkvpgf fqlfyssdfe ykterewilr flgeglrdkh
     1801 cyelydyqni fqvilsffns plcdegsqnr ileilqnaar vtraayeliq dhslltwilh
     1861 ilekrflenk llnkiisllh tlwltnlpdk rksknqsqen rkflpiqlvn eflyvmimli
     1921 khirtnlgla rltqffstls svleyravvv eafkemnrft vndsvlsnke illllhkwsv
     1981 iekdlqlqee vqtlaqkyqi kellknikek nksqasfrvy hhvqkkneve reddtaadlk
     2041 aselekcrdh lnsvfvhwep vfpapptkhq eeplksadlt detfgltcas tyvvtkwlvk
     2101 smvehslnmq nvsltlrwlq ncilphtvvv qemlrdeilr nnifrfytri ceassgtagl
     2161 ffkefclfgs vmlhlmdaqg ltknsfheiv ktlclsamte edankkavca fltsayigdi
     2221 wlgaqepeml ithiklicss tndklkdddl epqkhgeeti tmlckplyll hwginsvn
//
LOCUS       XP_053935419             110 aa            linear   VRT 09-MAR-2023
DEFINITION  NADH dehydrogenase [ubiquinone] 1 subunit C2 [Cuculus canorus].
ACCESSION   XP_053935419
VERSION     XP_053935419.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079444.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..110
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..110
                     /product="NADH dehydrogenase [ubiquinone] 1 subunit C2"
                     /calculated_mol_wt=12634
     Region          1..110
                     /region_name="NDUF_C2"
                     /note="NADH-ubiquinone oxidoreductase subunit b14.5b
                     (NDUFC2); pfam06374"
                     /db_xref="CDD:428908"
     CDS             1..110
                     /gene="NDUFC2"
                     /coded_by="XM_054079444.1:67..399"
                     /db_xref="GeneID:104064217"
ORIGIN      
        1 maflpaeara lppppllnkg sawlglvgwv aalldngykr rpvlragvhr qvllttvgwf
       61 vgyfltkrte yihakldrel feyvrqhped fkkaekkrmg ellenfypvr
//
LOCUS       XP_009554580             962 aa            linear   VRT 09-MAR-2023
DEFINITION  exportin-T [Cuculus canorus].
ACCESSION   XP_009554580
VERSION     XP_009554580.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556285.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..962
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..962
                     /product="exportin-T"
                     /calculated_mol_wt=109739
     Region          21..88
                     /region_name="IBN_N"
                     /note="Importin-beta N-terminal domain; smart00913"
                     /db_xref="CDD:197981"
     Region          100..247
                     /region_name="Xpo1"
                     /note="Exportin 1-like protein; pfam08389"
                     /db_xref="CDD:462459"
     Region          323..961
                     /region_name="Exportin-T"
                     /note="pfam19282"
                     /db_xref="CDD:437114"
     CDS             1..962
                     /gene="XPOT"
                     /coded_by="XM_009556285.2:234..3122"
                     /db_xref="GeneID:104055186"
ORIGIN      
        1 mdeqallgln pnadadfrqr alayfeqlki sqdawqvcae alaqsiysdd hikffcfqvl
       61 ehqikfkyse ltegqqqlir etlitwlqaq mlnpqpektf irnkaaqvfa llfvteyltk
      121 wpkfffdils vvdlnprgvd mylrilmavd aelvdrdvvh tseearrntl lkdtmreqci
      181 pslveswyqi lqnyqytnse ltcqclevvg ayvswidltl ianerfinml lghmsvevlr
      241 eeacdclfei vnkgmdpidk tklveslcqv lqsaglfsid qeddvdflar fsklvngmgq
      301 aliaswtkli ksgdmksaqd tlqaieakva lmlqllihed ddissniigf cydylhilkq
      361 lsalsdqqka nveaimlavm kkltydeeyn fenegedeam fveyrkqlkl lldrlaqvsp
      421 elllasvrrv fnttlqnwqt trfmevevai rllymlaeal pvshgahfsg dvtkatalqd
      481 mmrtlvtsgv sayqhtsvtl effetvvrye kffavepqhi ptvlmafldh rglrhtspkv
      541 rsrtaylfsr fvkslnkqmn pfiedvlnri qdllelsppe ngyqallssd dqlfiyetag
      601 vlivnseysa erkqvlmrnl ltplmekfkv lleklmmaqd edrqmaladc lnhavgfasr
      661 tskafsnkqt vkqcgcsevy ldclqtflpa lscplqkevl rsgvrtflhr miicleeevl
      721 pfipsasehm lkdceakdlq efiplinqit akfktqvspf lqqmfmpllh aifevlllpa
      781 eendqsaale kqmlrrsyfa flqtvtgsgm sevianqgae nvervlftvi qgavdypdpi
      841 aqktcfiils klvelwggkd gpvgfadfvy khivpacfla plkqtfdlad aqtvlalsec
      901 avtlktihlk rgpeciqylq qeylpslqva peiiqefcqa lqqpdakvfk nylkvffqra
      961 kp
//
LOCUS       XP_053935438             962 aa            linear   VRT 09-MAR-2023
DEFINITION  exportin-T [Cuculus canorus].
ACCESSION   XP_053935438
VERSION     XP_053935438.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079463.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..962
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..962
                     /product="exportin-T"
                     /calculated_mol_wt=109739
     Region          21..88
                     /region_name="IBN_N"
                     /note="Importin-beta N-terminal domain; smart00913"
                     /db_xref="CDD:197981"
     Region          100..247
                     /region_name="Xpo1"
                     /note="Exportin 1-like protein; pfam08389"
                     /db_xref="CDD:462459"
     Region          323..961
                     /region_name="Exportin-T"
                     /note="pfam19282"
                     /db_xref="CDD:437114"
     CDS             1..962
                     /gene="XPOT"
                     /coded_by="XM_054079463.1:209..3097"
                     /db_xref="GeneID:104055186"
ORIGIN      
        1 mdeqallgln pnadadfrqr alayfeqlki sqdawqvcae alaqsiysdd hikffcfqvl
       61 ehqikfkyse ltegqqqlir etlitwlqaq mlnpqpektf irnkaaqvfa llfvteyltk
      121 wpkfffdils vvdlnprgvd mylrilmavd aelvdrdvvh tseearrntl lkdtmreqci
      181 pslveswyqi lqnyqytnse ltcqclevvg ayvswidltl ianerfinml lghmsvevlr
      241 eeacdclfei vnkgmdpidk tklveslcqv lqsaglfsid qeddvdflar fsklvngmgq
      301 aliaswtkli ksgdmksaqd tlqaieakva lmlqllihed ddissniigf cydylhilkq
      361 lsalsdqqka nveaimlavm kkltydeeyn fenegedeam fveyrkqlkl lldrlaqvsp
      421 elllasvrrv fnttlqnwqt trfmevevai rllymlaeal pvshgahfsg dvtkatalqd
      481 mmrtlvtsgv sayqhtsvtl effetvvrye kffavepqhi ptvlmafldh rglrhtspkv
      541 rsrtaylfsr fvkslnkqmn pfiedvlnri qdllelsppe ngyqallssd dqlfiyetag
      601 vlivnseysa erkqvlmrnl ltplmekfkv lleklmmaqd edrqmaladc lnhavgfasr
      661 tskafsnkqt vkqcgcsevy ldclqtflpa lscplqkevl rsgvrtflhr miicleeevl
      721 pfipsasehm lkdceakdlq efiplinqit akfktqvspf lqqmfmpllh aifevlllpa
      781 eendqsaale kqmlrrsyfa flqtvtgsgm sevianqgae nvervlftvi qgavdypdpi
      841 aqktcfiils klvelwggkd gpvgfadfvy khivpacfla plkqtfdlad aqtvlalsec
      901 avtlktihlk rgpeciqylq qeylpslqva peiiqefcqa lqqpdakvfk nylkvffqra
      961 kp
//
LOCUS       XP_053935450             489 aa            linear   VRT 09-MAR-2023
DEFINITION  katanin p60 ATPase-containing subunit A-like 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053935450
VERSION     XP_053935450.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079475.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..489
                     /product="katanin p60 ATPase-containing subunit A-like 1
                     isoform X1"
                     /calculated_mol_wt=55036
     Region          4..72
                     /region_name="Kp60-NTD"
                     /note="N-terminal domain (NTD) found in katanin p60 (Kp60)
                     ATPase-containing subunit A1, and similar proteins;
                     cd21748"
                     /db_xref="CDD:439297"
     Site            order(7,14,17..20,22,29,51,55,58..59,61..62,65..66,68..69,
                     72)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:439297"
     Region          73..453
                     /region_name="SpoVK"
                     /note="AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell
                     wall/membrane/envelope biogenesis, Cell cycle control,
                     cell division, chromosome partitioning, Signal
                     transduction mechanisms]; COG0464"
                     /db_xref="CDD:440232"
     Region          208..377
                     /region_name="RecA-like_KTNA1"
                     /note="Katanin p60 ATPase-containing subunit A1; cd19522"
                     /db_xref="CDD:410930"
     Site            order(209..212,249..255)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:410930"
     Region          <449..487
                     /region_name="Vps4_C"
                     /note="Vps4 C terminal oligomerization domain; pfam09336"
                     /db_xref="CDD:462762"
     CDS             1..489
                     /gene="KATNAL1"
                     /coded_by="XM_054079475.1:151..1620"
                     /db_xref="GeneID:104064170"
ORIGIN      
        1 mnlaeicdna kkgreyallg nydssmvyyq gviqqiqrhc qslrdpaikg kwqqvrqelv
       61 eeyeqvksiv ntlesfkmdr padipvscqd epfrdpavwp ppvpaehrap pqikrpnrev
      121 kplrkespgl qprgpvgrah alskgekpag sreresrarg rddkgkkipq evgdgeipkf
      181 dgagydkdli dvlerdivsr npsihwddia dleeakkllr eavvlpmwmp dffkgirrpw
      241 kgvlmvgppg tgktmlakav atecgttffn vssstltsky rgeseklvrl lfemarfyap
      301 ttifideidc icsrrgtsde heasrrvkse llvqmdgvgg alenddpskm vmvlaatnfp
      361 wdidealrrr lekriyiplp takgraellk inlreveldp disleeiaek iegysgadit
      421 nvcrdaslma mrrringltp eeiralskee lqmpvtkgdf elalkkisks vsaadlekye
      481 kwmaefgsa
//
LOCUS       XP_053935460             489 aa            linear   VRT 09-MAR-2023
DEFINITION  katanin p60 ATPase-containing subunit A-like 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053935460
VERSION     XP_053935460.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079485.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..489
                     /product="katanin p60 ATPase-containing subunit A-like 1
                     isoform X1"
                     /calculated_mol_wt=55036
     Region          4..72
                     /region_name="Kp60-NTD"
                     /note="N-terminal domain (NTD) found in katanin p60 (Kp60)
                     ATPase-containing subunit A1, and similar proteins;
                     cd21748"
                     /db_xref="CDD:439297"
     Site            order(7,14,17..20,22,29,51,55,58..59,61..62,65..66,68..69,
                     72)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:439297"
     Region          73..453
                     /region_name="SpoVK"
                     /note="AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell
                     wall/membrane/envelope biogenesis, Cell cycle control,
                     cell division, chromosome partitioning, Signal
                     transduction mechanisms]; COG0464"
                     /db_xref="CDD:440232"
     Region          208..377
                     /region_name="RecA-like_KTNA1"
                     /note="Katanin p60 ATPase-containing subunit A1; cd19522"
                     /db_xref="CDD:410930"
     Site            order(209..212,249..255)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:410930"
     Region          <449..487
                     /region_name="Vps4_C"
                     /note="Vps4 C terminal oligomerization domain; pfam09336"
                     /db_xref="CDD:462762"
     CDS             1..489
                     /gene="KATNAL1"
                     /coded_by="XM_054079485.1:119..1588"
                     /db_xref="GeneID:104064170"
ORIGIN      
        1 mnlaeicdna kkgreyallg nydssmvyyq gviqqiqrhc qslrdpaikg kwqqvrqelv
       61 eeyeqvksiv ntlesfkmdr padipvscqd epfrdpavwp ppvpaehrap pqikrpnrev
      121 kplrkespgl qprgpvgrah alskgekpag sreresrarg rddkgkkipq evgdgeipkf
      181 dgagydkdli dvlerdivsr npsihwddia dleeakkllr eavvlpmwmp dffkgirrpw
      241 kgvlmvgppg tgktmlakav atecgttffn vssstltsky rgeseklvrl lfemarfyap
      301 ttifideidc icsrrgtsde heasrrvkse llvqmdgvgg alenddpskm vmvlaatnfp
      361 wdidealrrr lekriyiplp takgraellk inlreveldp disleeiaek iegysgadit
      421 nvcrdaslma mrrringltp eeiralskee lqmpvtkgdf elalkkisks vsaadlekye
      481 kwmaefgsa
//
LOCUS       XP_053935468             489 aa            linear   VRT 09-MAR-2023
DEFINITION  katanin p60 ATPase-containing subunit A-like 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053935468
VERSION     XP_053935468.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079493.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..489
                     /product="katanin p60 ATPase-containing subunit A-like 1
                     isoform X1"
                     /calculated_mol_wt=55036
     Region          4..72
                     /region_name="Kp60-NTD"
                     /note="N-terminal domain (NTD) found in katanin p60 (Kp60)
                     ATPase-containing subunit A1, and similar proteins;
                     cd21748"
                     /db_xref="CDD:439297"
     Site            order(7,14,17..20,22,29,51,55,58..59,61..62,65..66,68..69,
                     72)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:439297"
     Region          73..453
                     /region_name="SpoVK"
                     /note="AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell
                     wall/membrane/envelope biogenesis, Cell cycle control,
                     cell division, chromosome partitioning, Signal
                     transduction mechanisms]; COG0464"
                     /db_xref="CDD:440232"
     Region          208..377
                     /region_name="RecA-like_KTNA1"
                     /note="Katanin p60 ATPase-containing subunit A1; cd19522"
                     /db_xref="CDD:410930"
     Site            order(209..212,249..255)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:410930"
     Region          <449..487
                     /region_name="Vps4_C"
                     /note="Vps4 C terminal oligomerization domain; pfam09336"
                     /db_xref="CDD:462762"
     CDS             1..489
                     /gene="KATNAL1"
                     /coded_by="XM_054079493.1:35..1504"
                     /db_xref="GeneID:104064170"
ORIGIN      
        1 mnlaeicdna kkgreyallg nydssmvyyq gviqqiqrhc qslrdpaikg kwqqvrqelv
       61 eeyeqvksiv ntlesfkmdr padipvscqd epfrdpavwp ppvpaehrap pqikrpnrev
      121 kplrkespgl qprgpvgrah alskgekpag sreresrarg rddkgkkipq evgdgeipkf
      181 dgagydkdli dvlerdivsr npsihwddia dleeakkllr eavvlpmwmp dffkgirrpw
      241 kgvlmvgppg tgktmlakav atecgttffn vssstltsky rgeseklvrl lfemarfyap
      301 ttifideidc icsrrgtsde heasrrvkse llvqmdgvgg alenddpskm vmvlaatnfp
      361 wdidealrrr lekriyiplp takgraellk inlreveldp disleeiaek iegysgadit
      421 nvcrdaslma mrrringltp eeiralskee lqmpvtkgdf elalkkisks vsaadlekye
      481 kwmaefgsa
//
LOCUS       XP_053935478             487 aa            linear   VRT 09-MAR-2023
DEFINITION  katanin p60 ATPase-containing subunit A-like 1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053935478
VERSION     XP_053935478.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079503.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..487
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..487
                     /product="katanin p60 ATPase-containing subunit A-like 1
                     isoform X2"
                     /calculated_mol_wt=54837
     Region          4..72
                     /region_name="Kp60-NTD"
                     /note="N-terminal domain (NTD) found in katanin p60 (Kp60)
                     ATPase-containing subunit A1, and similar proteins;
                     cd21748"
                     /db_xref="CDD:439297"
     Site            order(7,14,17..20,22,29,51,55,58..59,61..62,65..66,68..69,
                     72)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:439297"
     Region          73..453
                     /region_name="SpoVK"
                     /note="AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell
                     wall/membrane/envelope biogenesis, Cell cycle control,
                     cell division, chromosome partitioning, Signal
                     transduction mechanisms]; COG0464"
                     /db_xref="CDD:440232"
     Region          208..377
                     /region_name="RecA-like_KTNA1"
                     /note="Katanin p60 ATPase-containing subunit A1; cd19522"
                     /db_xref="CDD:410930"
     Site            order(209..212,249..255)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:410930"
     Region          <449..481
                     /region_name="Vps4_C"
                     /note="Vps4 C terminal oligomerization domain; pfam09336"
                     /db_xref="CDD:462762"
     CDS             1..487
                     /gene="KATNAL1"
                     /coded_by="XM_054079503.1:151..1614"
                     /db_xref="GeneID:104064170"
ORIGIN      
        1 mnlaeicdna kkgreyallg nydssmvyyq gviqqiqrhc qslrdpaikg kwqqvrqelv
       61 eeyeqvksiv ntlesfkmdr padipvscqd epfrdpavwp ppvpaehrap pqikrpnrev
      121 kplrkespgl qprgpvgrah alskgekpag sreresrarg rddkgkkipq evgdgeipkf
      181 dgagydkdli dvlerdivsr npsihwddia dleeakkllr eavvlpmwmp dffkgirrpw
      241 kgvlmvgppg tgktmlakav atecgttffn vssstltsky rgeseklvrl lfemarfyap
      301 ttifideidc icsrrgtsde heasrrvkse llvqmdgvgg alenddpskm vmvlaatnfp
      361 wdidealrrr lekriyiplp takgraellk inlreveldp disleeiaek iegysgadit
      421 nvcrdaslma mrrringltp eeiralskee lqmpvtkgdf elalkkisks vsaadlekcl
      481 eqslwik
//
LOCUS       XP_053935486             433 aa            linear   VRT 09-MAR-2023
DEFINITION  katanin p60 ATPase-containing subunit A-like 1 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053935486
VERSION     XP_053935486.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079511.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..433
                     /product="katanin p60 ATPase-containing subunit A-like 1
                     isoform X3"
                     /calculated_mol_wt=48838
     Region          4..72
                     /region_name="Kp60-NTD"
                     /note="N-terminal domain (NTD) found in katanin p60 (Kp60)
                     ATPase-containing subunit A1, and similar proteins;
                     cd21748"
                     /db_xref="CDD:439297"
     Site            order(7,14,17..20,22,29,51,55,58..59,61..62,65..66,68..69,
                     72)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:439297"
     Region          73..424
                     /region_name="SpoVK"
                     /note="AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell
                     wall/membrane/envelope biogenesis, Cell cycle control,
                     cell division, chromosome partitioning, Signal
                     transduction mechanisms]; COG0464"
                     /db_xref="CDD:440232"
     Region          208..377
                     /region_name="RecA-like_KTNA1"
                     /note="Katanin p60 ATPase-containing subunit A1; cd19522"
                     /db_xref="CDD:410930"
     Site            order(209..212,249..255)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:410930"
     CDS             1..433
                     /gene="KATNAL1"
                     /coded_by="XM_054079511.1:151..1452"
                     /db_xref="GeneID:104064170"
ORIGIN      
        1 mnlaeicdna kkgreyallg nydssmvyyq gviqqiqrhc qslrdpaikg kwqqvrqelv
       61 eeyeqvksiv ntlesfkmdr padipvscqd epfrdpavwp ppvpaehrap pqikrpnrev
      121 kplrkespgl qprgpvgrah alskgekpag sreresrarg rddkgkkipq evgdgeipkf
      181 dgagydkdli dvlerdivsr npsihwddia dleeakkllr eavvlpmwmp dffkgirrpw
      241 kgvlmvgppg tgktmlakav atecgttffn vssstltsky rgeseklvrl lfemarfyap
      301 ttifideidc icsrrgtsde heasrrvkse llvqmdgvgg alenddpskm vmvlaatnfp
      361 wdidealrrr lekriyiplp takgraellk inlreveldp disleeiaek iegysgadit
      421 nvcrcleqsl wik
//
LOCUS       XP_053935496             412 aa            linear   VRT 09-MAR-2023
DEFINITION  katanin p60 ATPase-containing subunit A-like 1 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053935496
VERSION     XP_053935496.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079521.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..412
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..412
                     /product="katanin p60 ATPase-containing subunit A-like 1
                     isoform X4"
                     /calculated_mol_wt=46149
     Region          4..72
                     /region_name="Kp60-NTD"
                     /note="N-terminal domain (NTD) found in katanin p60 (Kp60)
                     ATPase-containing subunit A1, and similar proteins;
                     cd21748"
                     /db_xref="CDD:439297"
     Site            order(7,14,17..20,22,29,51,55,58..59,61..62,65..66,68..69,
                     72)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:439297"
     Region          164..300
                     /region_name="P-loop containing Nucleoside Triphosphate
                     Hydrolases"
                     /note="Members of the P-loop NTPase domain superfamily are
                     characterized by a conserved nucleotide phosphate-binding
                     motif, also referred to as the Walker A motif
                     (GxxxxGK[S/T], where x is any residue), and the Walker B
                     motif (hhhh[D/E], where h is a...; cl38936"
                     /db_xref="CDD:476819"
     Site            order(175..177,193,195..196,229..230)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:410865"
     Region          324..368
                     /region_name="AAA_lid_3"
                     /note="AAA+ lid domain; pfam17862"
                     /db_xref="CDD:465537"
     Region          <372..410
                     /region_name="Vps4_C"
                     /note="Vps4 C terminal oligomerization domain; pfam09336"
                     /db_xref="CDD:462762"
     CDS             1..412
                     /gene="KATNAL1"
                     /coded_by="XM_054079521.1:151..1389"
                     /db_xref="GeneID:104064170"
ORIGIN      
        1 mnlaeicdna kkgreyallg nydssmvyyq gviqqiqrhc qslrdpaikg kwqqvrqelv
       61 eeyeqvksiv ntlesfkmdr padipvscqd epfrdpavwp ppvpaehrap pqikrpnrev
      121 kplrkespgl qprgpvgrah alskgekpag sreresrarg rddkgvlmvg ppgtgktmla
      181 kavatecgtt ffnvssstlt skyrgesekl vrllfemarf yapttifide idcicsrrgt
      241 sdeheasrrv ksellvqmdg vggalenddp skmvmvlaat nfpwdideal rrrlekriyi
      301 plptakgrae llkinlreve ldpdisleei aekiegysga ditnvcrdas lmamrrring
      361 ltpeeirals keelqmpvtk gdfelalkki sksvsaadle kyekwmaefg sa
//
LOCUS       XP_053935511             215 aa            linear   VRT 09-MAR-2023
DEFINITION  high mobility group protein B1 [Cuculus canorus].
ACCESSION   XP_053935511
VERSION     XP_053935511.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079536.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..215
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..215
                     /product="high mobility group protein B1"
                     /calculated_mol_wt=24792
     Region          8..76
                     /region_name="HMG-box_HMGB_rpt1"
                     /note="first high mobility group (HMG)-box found in the
                     high mobility group protein B (HMGB) family; cd21978"
                     /db_xref="CDD:438794"
     Site            order(8..10,13,16..17,19..21,25,28,35..36,38..39,41..43,
                     45..46,50)
                     /site_type="other"
                     /note="p53 binding site [polypeptide binding]"
                     /db_xref="CDD:438794"
     Site            order(8,10..11,13..17,20..21,36,38..39,41..43,46,49)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438794"
     Region          93..163
                     /region_name="HMG-box_HMGB_rpt2"
                     /note="second high mobility group (HMG)-box found in the
                     high mobility group protein B (HMGB) family; cd21979"
                     /db_xref="CDD:438795"
     Site            order(94..100,102..104,106..107,110,122..123,125..127,130,
                     133,152,155..156,159,162..163)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438795"
     CDS             1..215
                     /gene="HMGB1"
                     /coded_by="XM_054079536.1:180..827"
                     /db_xref="GeneID:104064171"
ORIGIN      
        1 mgkgdpkkpr gkmssyaffv qtcreehkkk hpdasvnfse fskkcserwk tmsskekgkf
       61 edmakadklr yekemknyvp pkgetkkkfk dpnapkrpps afflfcsefr pkikgehpgl
      121 sigdvakklg emwnntaadd kqpyekkaak lkekyekdia ayrakgkvda gkkvvakaek
      181 skkkkeeeed edeeeedeed eeeeeeeeed dddde
//
LOCUS       XP_053935518             215 aa            linear   VRT 09-MAR-2023
DEFINITION  high mobility group protein B1 [Cuculus canorus].
ACCESSION   XP_053935518
VERSION     XP_053935518.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079543.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..215
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..215
                     /product="high mobility group protein B1"
                     /calculated_mol_wt=24792
     Region          8..76
                     /region_name="HMG-box_HMGB_rpt1"
                     /note="first high mobility group (HMG)-box found in the
                     high mobility group protein B (HMGB) family; cd21978"
                     /db_xref="CDD:438794"
     Site            order(8..10,13,16..17,19..21,25,28,35..36,38..39,41..43,
                     45..46,50)
                     /site_type="other"
                     /note="p53 binding site [polypeptide binding]"
                     /db_xref="CDD:438794"
     Site            order(8,10..11,13..17,20..21,36,38..39,41..43,46,49)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438794"
     Region          93..163
                     /region_name="HMG-box_HMGB_rpt2"
                     /note="second high mobility group (HMG)-box found in the
                     high mobility group protein B (HMGB) family; cd21979"
                     /db_xref="CDD:438795"
     Site            order(94..100,102..104,106..107,110,122..123,125..127,130,
                     133,152,155..156,159,162..163)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438795"
     CDS             1..215
                     /gene="HMGB1"
                     /coded_by="XM_054079543.1:150..797"
                     /db_xref="GeneID:104064171"
ORIGIN      
        1 mgkgdpkkpr gkmssyaffv qtcreehkkk hpdasvnfse fskkcserwk tmsskekgkf
       61 edmakadklr yekemknyvp pkgetkkkfk dpnapkrpps afflfcsefr pkikgehpgl
      121 sigdvakklg emwnntaadd kqpyekkaak lkekyekdia ayrakgkvda gkkvvakaek
      181 skkkkeeeed edeeeedeed eeeeeeeeed dddde
//
LOCUS       XP_053935552             202 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: GTPase KRas [Cuculus canorus].
ACCESSION   XP_053935552
VERSION     XP_053935552.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079577.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 3 indels
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..202
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..202
                     /product="LOW QUALITY PROTEIN: GTPase KRas"
                     /calculated_mol_wt=22813
     Region          3..165
                     /region_name="H_N_K_Ras_like"
                     /note="Ras GTPase family containing H-Ras,N-Ras and
                     K-Ras4A/4B; cd04138"
                     /db_xref="CDD:133338"
     Site            10..17
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:133338"
     Site            order(11..12,59..60)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133338"
     Site            order(12..18,28..30,32,35,60,117..118,120..121,146..147)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:133338"
     Site            order(17..18,30..32,34,37,40..41,54..55,57,59..61,63..65,
                     67,70..72,74,103..104,148)
                     /site_type="other"
                     /note="GEF interaction site [polypeptide binding]"
                     /db_xref="CDD:133338"
     Site            order(25,37..41)
                     /site_type="active"
                     /note="effector interaction site [active]"
                     /db_xref="CDD:133338"
     Site            33..40
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:133338"
     Site            35
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:133338"
     Site            57..60
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:133338"
     Site            order(59..67,69..78)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:133338"
     Site            117..120
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:133338"
     Site            146..148
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:133338"
     CDS             1..202
                     /gene="KRAS"
                     /coded_by="XM_054079577.1:218..826"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 3 bases in 2 codons"
                     /db_xref="GeneID:104067113"
ORIGIN      
        1 mteyklvvvg aggvgksalt iqliqnhfvd eydptiedsy rkqvvidget clldildtag
       61 qeeysaqsrd qymrtgegfl cvfainntks fedihhyreq ikrvkdsedv pmvlvgnkcd
      121 xpsqnvdtkq aqdlarsygi pfietsaktr qrvedafytl vreirqyrvk kkqqrrpktp
      181 gcvkikkclc nvtgvlmmps ih
//
LOCUS       XP_053935561              86 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: electron transfer flavoprotein regulatory
            factor 1 [Cuculus canorus].
ACCESSION   XP_053935561
VERSION     XP_053935561.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079586.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 3 indels
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..86
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..86
                     /product="LOW QUALITY PROTEIN: electron transfer
                     flavoprotein regulatory factor 1"
                     /calculated_mol_wt=10148
     Region          20..79
                     /region_name="Complex1_LYR_ETFRF1_LYRM5"
                     /note="LYR (leucine-tyrosine-arginine) motif found in
                     electron transfer flavoprotein regulatory factor 1
                     (ETFRF1) and similar proteins; cd20265"
                     /db_xref="CDD:380760"
     CDS             1..86
                     /gene="ETFRF1"
                     /coded_by="XM_054079586.1:113..373"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 2 bases in 2 codons"
                     /db_xref="GeneID:104067103"
ORIGIN      
        1 makslrgevl nlyknllylg reypkgadyf rsrlkaaflk nkdekdpeki kqliargefv
       61 ikelexlyfl rkyralkhry ysddnq
//
LOCUS       XP_053935573            1106 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit
            gamma isoform isoform X1 [Cuculus canorus].
ACCESSION   XP_053935573
VERSION     XP_053935573.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079598.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1106
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1106
                     /product="phosphatidylinositol 4,5-bisphosphate 3-kinase
                     catalytic subunit gamma isoform isoform X1"
                     /calculated_mol_wt=127843
     Region          1..192
                     /region_name="PIK3CG_ABD"
                     /note="PIK3 catalytic subunit gamma adaptor-binding
                     domain; pfam19710"
                     /db_xref="CDD:466155"
     Region          203..312
                     /region_name="PI3K_rbd"
                     /note="PI3-kinase family, ras-binding domain; cl02484"
                     /db_xref="CDD:413336"
     Region          350..530
                     /region_name="C2_PI3K_class_I_gamma"
                     /note="C2 domain present in class I gamma
                     phosphatidylinositol 3-kinases (PI3Ks); cd08399"
                     /db_xref="CDD:176044"
     Region          552..728
                     /region_name="PI3Ka_I"
                     /note="Phosphoinositide 3-kinase (PI3K) class I, accessory
                     domain; PIK domain is conserved in all PI3 and
                     PI4-kinases. Its role is unclear but it has been suggested
                     to be involved in substrate presentation. In general, PI3K
                     class I prefer phosphoinositol (4,5)...; cd00872"
                     /db_xref="CDD:238444"
     Region          732..1098
                     /region_name="PI3Kc_IB_gamma"
                     /note="Catalytic domain of Class IB Phosphoinositide
                     3-kinase gamma; cd00894"
                     /db_xref="CDD:270627"
     Site            order(807,809..811,813,834,836,839,870,882..885,890,893,
                     954,956,966..967)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270627"
     Site            order(877..878,978..979,981,983,1049,1052)
                     /site_type="other"
                     /note="putative regulatory subunit interface [polypeptide
                     binding]"
                     /db_xref="CDD:270627"
     Site            923
                     /site_type="other"
                     /note="Ras binding site [polypeptide binding]"
                     /db_xref="CDD:270627"
     Site            946..954
                     /site_type="active"
                     /note="catalytic loop [active]"
                     /db_xref="CDD:270627"
     Site            967..991
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270627"
     CDS             1..1106
                     /gene="PIK3CG"
                     /coded_by="XM_054079598.1:149..3469"
                     /db_xref="GeneID:104056069"
ORIGIN      
        1 melgdyeqpv vmreenkrrr rrmkphcmss nlssmelisi efilptsnkh tkvpeimvle
       61 iagnctveqm kaqiwmraie msqttdfyht ftpdqfilqy qkkgqwyeiy dkhqvlqtld
      121 cilywkvlqk kvgkiyvvqk qppsevvqef qqqlndligy dvtdvsnvhd deleftrrrl
      181 vtprmievac rdpklyamhp wttskplpey llkkitnnni fiiihrgtts qkikvsiddt
      241 pdmilhsfft kmakkkslmd ipedhseldf vlricgrdey iigetpikdf hwirqclkng
      301 eeihlvldnp pdpnedevqk eewplvddct gvtgyheqlt idgkdhervf tislwdcnrk
      361 frvkiigidi pvlprntdlt vfveaniqhg qqllsqrrts skpfteevlw niwlefdiki
      421 kdlpkgalln lqiycgkaqg vstktnlqsh espnsdskck tqllyyvnll lidhrfllrs
      481 geyvlhmwki pgkgeeqgsi nadkltsatn pdkensmais vvldkychpi alpkhritsd
      541 sqgdrtraem pnqlrkqlee iiatdplnpl spedkellwh fryesikhpk aypkllssvk
      601 wgqqeivakt yqllakkdvw dqsildvglt mqlldcnfsd envramavqk leslddddvl
      661 hyllqlvqav kfepyhdsal arfllkrglr nkrighflfw flrseiaqsm hyqqrfavil
      721 eaylrgcgka mlhdfmkqvq viellhkvtm eiksvsaeky dvtsqviaql rqkleklqss
      781 klpesfrvpy dpglragalv iekckvmask kkplwlefkc adptalsnet igiifkhgdd
      841 lrqdmlilqi lrimesiwea esldlcllpy gcistgnkig mieivkdatt iakiqqstvg
      901 ntgafkdeil nqwlkercmi eekfqaaver fvyscagycv atfvlgigdr hndnimitet
      961 gnlfhidfgh ilgnyksflg inkervpfvl tpdflfvmgt sgkktslhfh kfqdvcvkay
     1021 lalrhhtnll iilfsmmlmt gmpqltsked ieyirdaltv gkneedakkh fldqievcrd
     1081 kgwtvqfnwf lhlvlgikqg vekhsa
//
LOCUS       XP_053935579            1106 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit
            gamma isoform isoform X1 [Cuculus canorus].
ACCESSION   XP_053935579
VERSION     XP_053935579.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079604.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1106
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1106
                     /product="phosphatidylinositol 4,5-bisphosphate 3-kinase
                     catalytic subunit gamma isoform isoform X1"
                     /calculated_mol_wt=127843
     Region          1..192
                     /region_name="PIK3CG_ABD"
                     /note="PIK3 catalytic subunit gamma adaptor-binding
                     domain; pfam19710"
                     /db_xref="CDD:466155"
     Region          203..312
                     /region_name="PI3K_rbd"
                     /note="PI3-kinase family, ras-binding domain; cl02484"
                     /db_xref="CDD:413336"
     Region          350..530
                     /region_name="C2_PI3K_class_I_gamma"
                     /note="C2 domain present in class I gamma
                     phosphatidylinositol 3-kinases (PI3Ks); cd08399"
                     /db_xref="CDD:176044"
     Region          552..728
                     /region_name="PI3Ka_I"
                     /note="Phosphoinositide 3-kinase (PI3K) class I, accessory
                     domain; PIK domain is conserved in all PI3 and
                     PI4-kinases. Its role is unclear but it has been suggested
                     to be involved in substrate presentation. In general, PI3K
                     class I prefer phosphoinositol (4,5)...; cd00872"
                     /db_xref="CDD:238444"
     Region          732..1098
                     /region_name="PI3Kc_IB_gamma"
                     /note="Catalytic domain of Class IB Phosphoinositide
                     3-kinase gamma; cd00894"
                     /db_xref="CDD:270627"
     Site            order(807,809..811,813,834,836,839,870,882..885,890,893,
                     954,956,966..967)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270627"
     Site            order(877..878,978..979,981,983,1049,1052)
                     /site_type="other"
                     /note="putative regulatory subunit interface [polypeptide
                     binding]"
                     /db_xref="CDD:270627"
     Site            923
                     /site_type="other"
                     /note="Ras binding site [polypeptide binding]"
                     /db_xref="CDD:270627"
     Site            946..954
                     /site_type="active"
                     /note="catalytic loop [active]"
                     /db_xref="CDD:270627"
     Site            967..991
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270627"
     CDS             1..1106
                     /gene="PIK3CG"
                     /coded_by="XM_054079604.1:153..3473"
                     /db_xref="GeneID:104056069"
ORIGIN      
        1 melgdyeqpv vmreenkrrr rrmkphcmss nlssmelisi efilptsnkh tkvpeimvle
       61 iagnctveqm kaqiwmraie msqttdfyht ftpdqfilqy qkkgqwyeiy dkhqvlqtld
      121 cilywkvlqk kvgkiyvvqk qppsevvqef qqqlndligy dvtdvsnvhd deleftrrrl
      181 vtprmievac rdpklyamhp wttskplpey llkkitnnni fiiihrgtts qkikvsiddt
      241 pdmilhsfft kmakkkslmd ipedhseldf vlricgrdey iigetpikdf hwirqclkng
      301 eeihlvldnp pdpnedevqk eewplvddct gvtgyheqlt idgkdhervf tislwdcnrk
      361 frvkiigidi pvlprntdlt vfveaniqhg qqllsqrrts skpfteevlw niwlefdiki
      421 kdlpkgalln lqiycgkaqg vstktnlqsh espnsdskck tqllyyvnll lidhrfllrs
      481 geyvlhmwki pgkgeeqgsi nadkltsatn pdkensmais vvldkychpi alpkhritsd
      541 sqgdrtraem pnqlrkqlee iiatdplnpl spedkellwh fryesikhpk aypkllssvk
      601 wgqqeivakt yqllakkdvw dqsildvglt mqlldcnfsd envramavqk leslddddvl
      661 hyllqlvqav kfepyhdsal arfllkrglr nkrighflfw flrseiaqsm hyqqrfavil
      721 eaylrgcgka mlhdfmkqvq viellhkvtm eiksvsaeky dvtsqviaql rqkleklqss
      781 klpesfrvpy dpglragalv iekckvmask kkplwlefkc adptalsnet igiifkhgdd
      841 lrqdmlilqi lrimesiwea esldlcllpy gcistgnkig mieivkdatt iakiqqstvg
      901 ntgafkdeil nqwlkercmi eekfqaaver fvyscagycv atfvlgigdr hndnimitet
      961 gnlfhidfgh ilgnyksflg inkervpfvl tpdflfvmgt sgkktslhfh kfqdvcvkay
     1021 lalrhhtnll iilfsmmlmt gmpqltsked ieyirdaltv gkneedakkh fldqievcrd
     1081 kgwtvqfnwf lhlvlgikqg vekhsa
//
LOCUS       XP_053935589             998 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit
            gamma isoform isoform X2 [Cuculus canorus].
ACCESSION   XP_053935589
VERSION     XP_053935589.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079614.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..998
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..998
                     /product="phosphatidylinositol 4,5-bisphosphate 3-kinase
                     catalytic subunit gamma isoform isoform X2"
                     /calculated_mol_wt=115328
     Region          1..192
                     /region_name="PIK3CG_ABD"
                     /note="PIK3 catalytic subunit gamma adaptor-binding
                     domain; pfam19710"
                     /db_xref="CDD:466155"
     Region          203..312
                     /region_name="PI3K_rbd"
                     /note="PI3-kinase family, ras-binding domain; cl02484"
                     /db_xref="CDD:413336"
     Region          350..530
                     /region_name="C2_PI3K_class_I_gamma"
                     /note="C2 domain present in class I gamma
                     phosphatidylinositol 3-kinases (PI3Ks); cd08399"
                     /db_xref="CDD:176044"
     Region          552..728
                     /region_name="PI3Ka_I"
                     /note="Phosphoinositide 3-kinase (PI3K) class I, accessory
                     domain; PIK domain is conserved in all PI3 and
                     PI4-kinases. Its role is unclear but it has been suggested
                     to be involved in substrate presentation. In general, PI3K
                     class I prefer phosphoinositol (4,5)...; cd00872"
                     /db_xref="CDD:238444"
     Region          732..>963
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(807..811,813,834,836,870,882..885,949,953..954,956)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270627"
     CDS             1..998
                     /gene="PIK3CG"
                     /coded_by="XM_054079614.1:149..3145"
                     /db_xref="GeneID:104056069"
ORIGIN      
        1 melgdyeqpv vmreenkrrr rrmkphcmss nlssmelisi efilptsnkh tkvpeimvle
       61 iagnctveqm kaqiwmraie msqttdfyht ftpdqfilqy qkkgqwyeiy dkhqvlqtld
      121 cilywkvlqk kvgkiyvvqk qppsevvqef qqqlndligy dvtdvsnvhd deleftrrrl
      181 vtprmievac rdpklyamhp wttskplpey llkkitnnni fiiihrgtts qkikvsiddt
      241 pdmilhsfft kmakkkslmd ipedhseldf vlricgrdey iigetpikdf hwirqclkng
      301 eeihlvldnp pdpnedevqk eewplvddct gvtgyheqlt idgkdhervf tislwdcnrk
      361 frvkiigidi pvlprntdlt vfveaniqhg qqllsqrrts skpfteevlw niwlefdiki
      421 kdlpkgalln lqiycgkaqg vstktnlqsh espnsdskck tqllyyvnll lidhrfllrs
      481 geyvlhmwki pgkgeeqgsi nadkltsatn pdkensmais vvldkychpi alpkhritsd
      541 sqgdrtraem pnqlrkqlee iiatdplnpl spedkellwh fryesikhpk aypkllssvk
      601 wgqqeivakt yqllakkdvw dqsildvglt mqlldcnfsd envramavqk leslddddvl
      661 hyllqlvqav kfepyhdsal arfllkrglr nkrighflfw flrseiaqsm hyqqrfavil
      721 eaylrgcgka mlhdfmkqvq viellhkvtm eiksvsaeky dvtsqviaql rqkleklqss
      781 klpesfrvpy dpglragalv iekckvmask kkplwlefkc adptalsnet igiifkhgdd
      841 lrqdmlilqi lrimesiwea esldlcllpy gcistgnkig mieivkdatt iakiqqstvg
      901 ntgafkdeil nqwlkercmi eekfqaaver fvyscagycv atfvlgigdr hndnimitet
      961 grmreglfss stshkpsdhp vlhdvndwna pvnqqrgy
//
LOCUS       XP_009569844             100 aa            linear   VRT 09-MAR-2023
DEFINITION  osteocalcin [Cuculus canorus].
ACCESSION   XP_009569844
VERSION     XP_009569844.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009571549.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009569844.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..100
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..100
                     /product="osteocalcin"
                     /calculated_mol_wt=11638
     CDS             1..100
                     /gene="LOC104068646"
                     /coded_by="XM_009571549.2:109..411"
                     /db_xref="GeneID:104068646"
ORIGIN      
        1 mrsllaaliv tlalaalcyc ekdpkepsgs psadsikikk evanafvkrq krytpyeryy
       61 eyykspmeqm hercenyppc dylsdqigfs maynyyfgry
//
LOCUS       XP_053935614             203 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related protein Rab-30 [Cuculus canorus].
ACCESSION   XP_053935614
VERSION     XP_053935614.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079639.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..203
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..203
                     /product="ras-related protein Rab-30"
                     /calculated_mol_wt=22827
     Region          3..171
                     /region_name="Rab30"
                     /note="Rab GTPase family 30 (Rab30); cd04114"
                     /db_xref="CDD:133314"
     Site            6..11
                     /site_type="other"
                     /note="Rab subfamily motif 1 (RabSF1)"
                     /db_xref="CDD:133314"
     Site            16..23
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:133314"
     Site            order(18..24,34,40..41,67,122..123,125,153..154)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:133314"
     Site            24..40
                     /site_type="other"
                     /note="Rab subfamily motif 2 (RabSF2)"
                     /db_xref="CDD:133314"
     Site            order(34,39..47)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:133314"
     Site            order(39,43..50,57,59)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133314"
     Site            41
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:133314"
     Site            order(42,44..46,61,63,70..71,74,78,80..83,170)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:133314"
     Site            order(42..43,45,63..64,71,73,75..77)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133314"
     Site            42..46
                     /site_type="other"
                     /note="Rab family motif 1 (RabF1)"
                     /db_xref="CDD:133314"
     Site            59..63
                     /site_type="other"
                     /note="Rab family motif 2 (RabF2)"
                     /db_xref="CDD:133314"
     Site            64..67
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:133314"
     Site            order(67,69..79)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:133314"
     Site            70..75
                     /site_type="other"
                     /note="Rab family motif 3 (RabF3)"
                     /db_xref="CDD:133314"
     Site            78..82
                     /site_type="other"
                     /note="Rab family motif 4 (RabF4)"
                     /db_xref="CDD:133314"
     Site            87..92
                     /site_type="other"
                     /note="Rab family motif 5 (RabF5)"
                     /db_xref="CDD:133314"
     Site            110..119
                     /site_type="other"
                     /note="Rab subfamily motif 3 (RabSF3)"
                     /db_xref="CDD:133314"
     Site            122..125
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:133314"
     Site            152..154
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:133314"
     Site            168..171
                     /site_type="other"
                     /note="Rab subfamily motif 4 (RabSF4)"
                     /db_xref="CDD:133314"
     CDS             1..203
                     /gene="RAB30"
                     /coded_by="XM_054079639.1:590..1201"
                     /db_xref="GeneID:104062981"
ORIGIN      
        1 msmedydflf kivlignagv gktclvrrft qglfppgqga tigvdfmikt veingekvkl
       61 qiwdtagqer frsitqsyyr sanaliltyd itceesfrcl pewlreieqy asnkvitvlv
      121 gnkidladkr evsqqraaef seaqdmyyle tsakesdnve klfldlacrl isearqntlv
      181 nnvssplpge gksisyltcc nfn
//
LOCUS       XP_053935622             203 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related protein Rab-30 [Cuculus canorus].
ACCESSION   XP_053935622
VERSION     XP_053935622.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079647.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..203
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..203
                     /product="ras-related protein Rab-30"
                     /calculated_mol_wt=22827
     Region          3..171
                     /region_name="Rab30"
                     /note="Rab GTPase family 30 (Rab30); cd04114"
                     /db_xref="CDD:133314"
     Site            6..11
                     /site_type="other"
                     /note="Rab subfamily motif 1 (RabSF1)"
                     /db_xref="CDD:133314"
     Site            16..23
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:133314"
     Site            order(18..24,34,40..41,67,122..123,125,153..154)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:133314"
     Site            24..40
                     /site_type="other"
                     /note="Rab subfamily motif 2 (RabSF2)"
                     /db_xref="CDD:133314"
     Site            order(34,39..47)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:133314"
     Site            order(39,43..50,57,59)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133314"
     Site            41
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:133314"
     Site            order(42,44..46,61,63,70..71,74,78,80..83,170)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:133314"
     Site            order(42..43,45,63..64,71,73,75..77)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133314"
     Site            42..46
                     /site_type="other"
                     /note="Rab family motif 1 (RabF1)"
                     /db_xref="CDD:133314"
     Site            59..63
                     /site_type="other"
                     /note="Rab family motif 2 (RabF2)"
                     /db_xref="CDD:133314"
     Site            64..67
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:133314"
     Site            order(67,69..79)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:133314"
     Site            70..75
                     /site_type="other"
                     /note="Rab family motif 3 (RabF3)"
                     /db_xref="CDD:133314"
     Site            78..82
                     /site_type="other"
                     /note="Rab family motif 4 (RabF4)"
                     /db_xref="CDD:133314"
     Site            87..92
                     /site_type="other"
                     /note="Rab family motif 5 (RabF5)"
                     /db_xref="CDD:133314"
     Site            110..119
                     /site_type="other"
                     /note="Rab subfamily motif 3 (RabSF3)"
                     /db_xref="CDD:133314"
     Site            122..125
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:133314"
     Site            152..154
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:133314"
     Site            168..171
                     /site_type="other"
                     /note="Rab subfamily motif 4 (RabSF4)"
                     /db_xref="CDD:133314"
     CDS             1..203
                     /gene="RAB30"
                     /coded_by="XM_054079647.1:31..642"
                     /db_xref="GeneID:104062981"
ORIGIN      
        1 msmedydflf kivlignagv gktclvrrft qglfppgqga tigvdfmikt veingekvkl
       61 qiwdtagqer frsitqsyyr sanaliltyd itceesfrcl pewlreieqy asnkvitvlv
      121 gnkidladkr evsqqraaef seaqdmyyle tsakesdnve klfldlacrl isearqntlv
      181 nnvssplpge gksisyltcc nfn
//
LOCUS       XP_053935628             299 aa            linear   VRT 09-MAR-2023
DEFINITION  epithelial-stromal interaction protein 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053935628
VERSION     XP_053935628.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079653.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..299
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..299
                     /product="epithelial-stromal interaction protein 1 isoform
                     X1"
                     /calculated_mol_wt=35257
     CDS             1..299
                     /gene="EPSTI1"
                     /coded_by="XM_054079653.1:69..968"
                     /db_xref="GeneID:104056534"
ORIGIN      
        1 msgvggwreg smyrraaass apfssqgyhw dgssereeae npqkmttfge eqsgralvyq
       61 kqqeqhvrpy ivitpnemrr nklqqvarre lndleqwkke hrpgpvklap qrlggkesea
      121 qarqnqqmml mqskyqqkhk reeyvkakka aeeaeilkkk aiqrekaerl evkkiqqemq
      181 rreifledqy yktnellnrl dlgftksgsc qianhgqest awvsktmtrs haykqalred
      241 enrrleemkq eqwrkgelme ikqkqeeear tralqneqrr vnnafldrlq nktqpdsiy
//
LOCUS       XP_053935636             294 aa            linear   VRT 09-MAR-2023
DEFINITION  epithelial-stromal interaction protein 1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053935636
VERSION     XP_053935636.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079661.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..294
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..294
                     /product="epithelial-stromal interaction protein 1 isoform
                     X2"
                     /calculated_mol_wt=34710
     CDS             1..294
                     /gene="EPSTI1"
                     /coded_by="XM_054079661.1:69..953"
                     /db_xref="GeneID:104056534"
ORIGIN      
        1 msgvggwreg smyrraaass apfssqgyhw dgssereeae npqkmttfge eqsgralvyq
       61 kqqeqhvrpy ivitpnemrr nklqqvarre lndleqwkke hrpgpvklap qrlggkesea
      121 qarqnqqmml mqskyqqkhk reeyvkakka aeeaeilkkk aiqrekaerl evkkiqqemq
      181 rreifledqy yktnellnrl dlgftksgsc qianhgqest awtrshaykq alredenrrl
      241 eemkqeqwrk gelmeikqkq eeeartralq neqrrvnnaf ldrlqnktqp dsiy
//
LOCUS       XP_053935657             417 aa            linear   VRT 09-MAR-2023
DEFINITION  inhibitor of growth protein 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053935657
VERSION     XP_053935657.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079682.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..417
                     /product="inhibitor of growth protein 3 isoform X1"
                     /calculated_mol_wt=46429
     Region          3..102
                     /region_name="ING"
                     /note="Inhibitor of growth proteins N-terminal
                     histone-binding; pfam12998"
                     /db_xref="CDD:463768"
     Region          4..409
                     /region_name="TNG2"
                     /note="Chromatin remodeling protein, contains PhD zinc
                     finger [Chromatin structure and dynamics]; COG5034"
                     /db_xref="CDD:227367"
     Region          361..405
                     /region_name="PHD_ING3"
                     /note="PHD finger found in inhibitor of growth protein 3
                     (ING3) and similar proteins; cd15585"
                     /db_xref="CDD:277060"
     Site            order(361,371..376,383..384,387,395..396,398,400)
                     /site_type="other"
                     /note="H3K4me3 binding site [polypeptide binding]"
                     /db_xref="CDD:277060"
     CDS             1..417
                     /gene="ING3"
                     /coded_by="XM_054079682.1:134..1387"
                     /db_xref="GeneID:104061623"
ORIGIN      
        1 mlyledylem ieqlpmdlrd rftemremdl qvqnamdqle qrvneffmna kknkpewree
       61 qmtsikkdyy kaledadekv qlanqiydlv drhlrkldqe lakfkmelea dnagiteile
      121 rrsleldtps qpvnnhhahs htpvekrkhn psshhgtadh vpekkfksea llstltsdas
      181 kentpgcrns nsssssnnty ntnssqplas ynlgslssgs gagaitmaaa qavqataqmk
      241 egrrtsslka syeafknndf qlgrefslsr dstgysssal astltqtlss sttdsrsgrk
      301 sknnnksssq qsssssssss lsscssssal aqelsqqttv ipesdsnsqv dwtydpnepr
      361 ycicnqvsyg emvgcdnqdc piewfhygcv glteapkgkw ycpqctaamk rrgsrhk
//
LOCUS       XP_053935663             384 aa            linear   VRT 09-MAR-2023
DEFINITION  inhibitor of growth protein 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053935663
VERSION     XP_053935663.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079688.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..384
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..384
                     /product="inhibitor of growth protein 3 isoform X2"
                     /calculated_mol_wt=43048
     Region          3..102
                     /region_name="ING"
                     /note="Inhibitor of growth proteins N-terminal
                     histone-binding; pfam12998"
                     /db_xref="CDD:463768"
     Region          4..376
                     /region_name="TNG2"
                     /note="Chromatin remodeling protein, contains PhD zinc
                     finger [Chromatin structure and dynamics]; COG5034"
                     /db_xref="CDD:227367"
     Region          328..372
                     /region_name="PHD_ING3"
                     /note="PHD finger found in inhibitor of growth protein 3
                     (ING3) and similar proteins; cd15585"
                     /db_xref="CDD:277060"
     Site            order(328,338..343,350..351,354,362..363,365,367)
                     /site_type="other"
                     /note="H3K4me3 binding site [polypeptide binding]"
                     /db_xref="CDD:277060"
     CDS             1..384
                     /gene="ING3"
                     /coded_by="XM_054079688.1:134..1288"
                     /db_xref="GeneID:104061623"
ORIGIN      
        1 mlyledylem ieqlpmdlrd rftemremdl qvqnamdqle qrvneffmna kknkpewree
       61 qmtsikkdyy kaledadekv qlanqiydlv drhlrkldqe lakfkmelea dnagiteile
      121 rrsleldtps qpvnnhhahs htpvekrkhn psshhgtadh vpekkfksea llstltsdas
      181 kentpgsgag aitmaaaqav qataqmkegr rtsslkasye afknndfqlg refslsrdst
      241 gysssalast ltqtlssstt dsrsgrkskn nnksssqqss ssssssslss cssssalaqe
      301 lsqqttvipe sdsnsqvdwt ydpnepryci cnqvsygemv gcdnqdcpie wfhygcvglt
      361 eapkgkwycp qctaamkrrg srhk
//
LOCUS       XP_053935673             382 aa            linear   VRT 09-MAR-2023
DEFINITION  inhibitor of growth protein 3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053935673
VERSION     XP_053935673.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079698.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..382
                     /product="inhibitor of growth protein 3 isoform X3"
                     /calculated_mol_wt=42066
     Region          <1..63
                     /region_name="ING_ING3_Yng2p"
                     /note="Inhibitor of growth (ING) domain of inhibitor of
                     growth protein 3 (ING3), Yng2p and similar proteins;
                     cd16858"
                     /db_xref="CDD:341091"
     Region          326..370
                     /region_name="PHD_ING3"
                     /note="PHD finger found in inhibitor of growth protein 3
                     (ING3) and similar proteins; cd15585"
                     /db_xref="CDD:277060"
     Site            order(326,336..341,348..349,352,360..361,363,365)
                     /site_type="other"
                     /note="H3K4me3 binding site [polypeptide binding]"
                     /db_xref="CDD:277060"
     CDS             1..382
                     /gene="ING3"
                     /coded_by="XM_054079698.1:3913..5061"
                     /db_xref="GeneID:104061623"
ORIGIN      
        1 mdqleqrvne ffmnakknkp ewreeqmtsi kkdyykaled adekvqlanq iydlvdrhlr
       61 kldqelakfk meleadnagi teilerrsle ldtpsqpvnn hhahshtpve krkhnpsshh
      121 gtadhvpekk fkseallstl tsdaskentp gcrnsnssss snntyntnss qplasynlgs
      181 lssgsgagai tmaaaqavqa taqmkegrrt sslkasyeaf knndfqlgre fslsrdstgy
      241 sssalastlt qtlsssttds rsgrksknnn ksssqqssss ssssslsscs sssalaqels
      301 qqttvipesd snsqvdwtyd pneprycicn qvsygemvgc dnqdcpiewf hygcvgltea
      361 pkgkwycpqc taamkrrgsr hk
//
LOCUS       XP_053935682            1393 aa            linear   VRT 09-MAR-2023
DEFINITION  condensin complex subunit 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053935682
VERSION     XP_053935682.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079707.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1393
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1393
                     /product="condensin complex subunit 1 isoform X1"
                     /calculated_mol_wt=155692
     Region          59..1237
                     /region_name="COG5098"
                     /note="Chromosome condensation complex Condensin, subunit
                     D2 [Chromatin structure and dynamics / Cell division and
                     chromosome partitioning]"
                     /db_xref="CDD:227429"
     CDS             1..1393
                     /gene="NCAPD2"
                     /coded_by="XM_054079707.1:187..4368"
                     /db_xref="GeneID:104064405"
ORIGIN      
        1 magawefslp ltpadllrdg gpgryvvqev lpvrelpqal tafrtafrtr galavlqhfd
       61 piysllhhfr vvgtdlkedt lelmmqvvsh hsnelpails dsglshadra ahlnalkmnc
      121 yllsglvdaf emetgksgsl evdpggknkk nrtktsgslw deerepllcl ltqvlqldlr
      181 qlwgglvvee efislmtgsc yrilenpsig lqkyratrea vthllatalv hydhmfsatl
      241 kitqmlqhfe hvapafaqav slwateyglk slvgellrei gqkcpqdlmr dasgikgyat
      301 fitelaeqip alvlsnmsvl lrhldgeshm mrnavlaama evlvqvlngd qleeaargtr
      361 dqflnmlqdh icdvnsfvrs rvlqlftriv qckvlplsqf qsvvslavgr lqdkavvvvk
      421 yaiqllaafl snnpfsckls ctdlaeplkk evqklqemrd rgrsrtasav tpeeeweaml
      481 pevraaiqql fqplqeeeee vleieetves tseqitrllr klnyksaarl tqkalchfqg
      541 kepfcgttee neeaailgil krlyigscsd etskdlphan sspkteevvl eeqsqtelik
      601 qemlvqylqd aynfsvkite alslisklmy encvsvvqea ieffvtvskf gvpqallgvr
      661 rmlpliwske agikeavlna yrqlylspsg dseraraqgl vhslslimvd aslgtiqcle
      721 eivsefvqkd eikpaviqll werfteksqc sslerraavm llgmmargkp eiigsnldvl
      781 vtvglsekvs edyrlaqevc naisklarnp kpvqgktnap frlpqdhvlf grlsetvskg
      841 faqpsshwip fmeaavmliy qlaegaeeic ahilqvcsqq aleklqeddp egspsrvshg
      901 asslptfllm hlmslvgqva lqqvaylevs vsaelrrrrv lreeektkkq snsstkkqrs
      961 rstgnettme eelglvgasa ddteaelirs icetelldgk hlfsafiplv lkicnnpgly
     1021 sdpalsaaaa ltlgkvcmis sefcdsqlrl lftmmeksal pavrsnliia agdlairfpn
     1081 lvepwtshly arlrdpcpsv rqttglvlth lilkdmvkvk gqvsematll idpeeaimgv
     1141 aqnffselsn kgnaiynllp diisrlsdpn cgieeesfht imrhlfsyit kdkqteslve
     1201 klcqrfrtvr terqyrdlsy cltllppser glrklqdnfd cfadklqdps vyscfqtvlt
     1261 rfrraggkpe tkalaeeleq klsachkrgl dsaetcqeds gtqmpepakr kptdshrqpl
     1321 rtanrdedfv tppprtlrnh kraqkhppak kaiitfssde ensseddlla elreeetptk
     1381 ttpitrssar rlh
//
LOCUS       XP_053935686            1310 aa            linear   VRT 09-MAR-2023
DEFINITION  condensin complex subunit 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053935686
VERSION     XP_053935686.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079711.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1310
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1310
                     /product="condensin complex subunit 1 isoform X2"
                     /calculated_mol_wt=146408
     Region          66..1154
                     /region_name="COG5098"
                     /note="Chromosome condensation complex Condensin, subunit
                     D2 [Chromatin structure and dynamics / Cell division and
                     chromosome partitioning]"
                     /db_xref="CDD:227429"
     CDS             1..1310
                     /gene="NCAPD2"
                     /coded_by="XM_054079711.1:268..4200"
                     /db_xref="GeneID:104064405"
ORIGIN      
        1 mmqvvshhsn elpailsdsg lshadraahl nalkmncyll sglvdafeme tgksgslevd
       61 pggknkknrt ktsgslwdee repllclltq vlqldlrqlw gglvveeefi slmtgscyri
      121 lenpsiglqk yratreavth llatalvhyd hmfsatlkit qmlqhfehva pafaqavslw
      181 ateyglkslv gellreigqk cpqdlmrdas gikgyatfit elaeqipalv lsnmsvllrh
      241 ldgeshmmrn avlaamaevl vqvlngdqle eaargtrdqf lnmlqdhicd vnsfvrsrvl
      301 qlftrivqck vlplsqfqsv vslavgrlqd kavvvvkyai qllaaflsnn pfscklsctd
      361 laeplkkevq klqemrdrgr srtasavtpe eeweamlpev raaiqqlfqp lqeeeeevle
      421 ieetvestse qitrllrkln yksaarltqk alchfqgkep fcgtteenee aailgilkrl
      481 yigscsdets kdlphanssp kteevvleeq sqtelikqem lvqylqdayn fsvkiteals
      541 lisklmyenc vsvvqeaief fvtvskfgvp qallgvrrml pliwskeagi keavlnayrq
      601 lylspsgdse raraqglvhs lslimvdasl gtiqcleeiv sefvqkdeik paviqllwer
      661 fteksqcssl erraavmllg mmargkpeii gsnldvlvtv glsekvsedy rlaqevcnai
      721 sklarnpkpv qgktnapfrl pqdhvlfgrl setvskgfaq psshwipfme aavmliyqla
      781 egaeeicahi lqvcsqqale klqeddpegs psrvshgass lptfllmhlm slvgqvalqq
      841 vaylevsvsa elrrrrvlre eektkkqsns stkkqrsrst gnettmeeel glvgasaddt
      901 eaelirsice telldgkhlf safiplvlki cnnpglysdp alsaaaaltl gkvcmissef
      961 cdsqlrllft mmeksalpav rsnliiaagd lairfpnlve pwtshlyarl rdpcpsvrqt
     1021 tglvlthlil kdmvkvkgqv sematllidp eeaimgvaqn ffselsnkgn aiynllpdii
     1081 srlsdpncgi eeesfhtimr hlfsyitkdk qteslveklc qrfrtvrter qyrdlsyclt
     1141 llppserglr klqdnfdcfa dklqdpsvys cfqtvltrfr raggkpetka laeeleqkls
     1201 achkrgldsa etcqedsgtq mpepakrkpt dshrqplrta nrdedfvtpp prtlrnhkra
     1261 qkhppakkai itfssdeens seddllaelr eeetptkttp itrssarrlh
//
LOCUS       XP_053935694            1245 aa            linear   VRT 09-MAR-2023
DEFINITION  condensin complex subunit 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053935694
VERSION     XP_053935694.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079719.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1245
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1245
                     /product="condensin complex subunit 1 isoform X3"
                     /calculated_mol_wt=139720
     Region          65..1089
                     /region_name="COG5098"
                     /note="Chromosome condensation complex Condensin, subunit
                     D2 [Chromatin structure and dynamics / Cell division and
                     chromosome partitioning]"
                     /db_xref="CDD:227429"
     CDS             1..1245
                     /gene="NCAPD2"
                     /coded_by="XM_054079719.1:401..4138"
                     /db_xref="GeneID:104064405"
ORIGIN      
        1 mplkwklarv vhwrwilvgr trrtvprpld pygmrrgsrs yvcshslmtg scyrilenps
       61 iglqkyratr eavthllata lvhydhmfsa tlkitqmlqh fehvapafaq avslwateyg
      121 lkslvgellr eigqkcpqdl mrdasgikgy atfitelaeq ipalvlsnms vllrhldges
      181 hmmrnavlaa maevlvqvln gdqleeaarg trdqflnmlq dhicdvnsfv rsrvlqlftr
      241 ivqckvlpls qfqsvvslav grlqdkavvv vkyaiqllaa flsnnpfsck lsctdlaepl
      301 kkevqklqem rdrgrsrtas avtpeeewea mlpevraaiq qlfqplqeee eevleieetv
      361 estseqitrl lrklnyksaa rltqkalchf qgkepfcgtt eeneeaailg ilkrlyigsc
      421 sdetskdlph ansspkteev vleeqsqtel ikqemlvqyl qdaynfsvki tealsliskl
      481 myencvsvvq eaieffvtvs kfgvpqallg vrrmlpliws keagikeavl nayrqlylsp
      541 sgdseraraq glvhslslim vdaslgtiqc leeivsefvq kdeikpaviq llwerfteks
      601 qcsslerraa vmllgmmarg kpeiigsnld vlvtvglsek vsedyrlaqe vcnaisklar
      661 npkpvqgktn apfrlpqdhv lfgrlsetvs kgfaqpsshw ipfmeaavml iyqlaegaee
      721 icahilqvcs qqaleklqed dpegspsrvs hgasslptfl lmhlmslvgq valqqvayle
      781 vsvsaelrrr rvlreeektk kqsnsstkkq rsrstgnett meeelglvga saddteaeli
      841 rsicetelld gkhlfsafip lvlkicnnpg lysdpalsaa aaltlgkvcm issefcdsql
      901 rllftmmeks alpavrsnli iaagdlairf pnlvepwtsh lyarlrdpcp svrqttglvl
      961 thlilkdmvk vkgqvsemat llidpeeaim gvaqnffsel snkgnaiynl lpdiisrlsd
     1021 pncgieeesf htimrhlfsy itkdkqtesl veklcqrfrt vrterqyrdl sycltllpps
     1081 erglrklqdn fdcfadklqd psvyscfqtv ltrfrraggk petkalaeel eqklsachkr
     1141 gldsaetcqe dsgtqmpepa krkptdshrq plrtanrded fvtppprtlr nhkraqkhpp
     1201 akkaiitfss deensseddl laelreeetp tkttpitrss arrlh
//
LOCUS       XP_009565034             150 aa            linear   VRT 09-MAR-2023
DEFINITION  39S ribosomal protein L51, mitochondrial [Cuculus canorus].
ACCESSION   XP_009565034
VERSION     XP_009565034.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566739.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009565034.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..150
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..150
                     /product="39S ribosomal protein L51, mitochondrial"
                     /calculated_mol_wt=16996
     Region          61..148
                     /region_name="MRP-L51"
                     /note="Mitochondrial ribosomal subunit; pfam10244"
                     /db_xref="CDD:463021"
     CDS             1..150
                     /gene="MRPL51"
                     /coded_by="XM_009566739.2:29..481"
                     /db_xref="GeneID:104064406"
ORIGIN      
        1 maalvraagr allgraepll waerslssgg vhcgavrpgl pvplssplag ltrairirep
       61 pkrkqvdrwt ekralfgvyd nvgilggfki hpknlivgpk wlqgwrgnel qrcirkkqvv
      121 gdrmfvedyh klnkrirfly rrfnrtgkhr
//
LOCUS       XP_053935709             187 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 272 isoform X1 [Cuculus canorus].
ACCESSION   XP_053935709
VERSION     XP_053935709.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079734.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..187
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..187
                     /product="transmembrane protein 272 isoform X1"
                     /calculated_mol_wt=21419
     CDS             1..187
                     /gene="TMEM272"
                     /coded_by="XM_054079734.1:300..863"
                     /db_xref="GeneID:128853625"
ORIGIN      
        1 mtaglekach rciskiasna cfifallafl alplsmtftg mkfledcpvq pliplyllvg
       61 gvigslkvtl llydstrmrq llsksvvidd ddddeypwrq nahkyyihlt lslflflwfi
      121 lgnywvfsvy lpnfippfhq pqdycdktly ifavavliis htilfllifc scciycfsrq
      181 rvsseed
//
LOCUS       XP_053935716             152 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 272 isoform X2 [Cuculus canorus].
ACCESSION   XP_053935716
VERSION     XP_053935716.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079741.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..152
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..152
                     /product="transmembrane protein 272 isoform X2"
                     /calculated_mol_wt=17712
     CDS             1..152
                     /gene="TMEM272"
                     /coded_by="XM_054079741.1:323..781"
                     /db_xref="GeneID:128853625"
ORIGIN      
        1 mtftgmkfle dcpvqplipl yllvggvigs lkvtlllyds trmrqllsks vvidddddde
       61 ypwrqnahky yihltlslfl flwfilgnyw vfsvylpnfi ppfhqpqdyc dktlyifava
      121 vliishtilf llifcscciy cfsrqrvsse ed
//
LOCUS       XP_053935724             836 aa            linear   VRT 09-MAR-2023
DEFINITION  protein O-mannosyl-transferase TMTC2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053935724
VERSION     XP_053935724.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079749.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..836
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..836
                     /product="protein O-mannosyl-transferase TMTC2 isoform X1"
                     /calculated_mol_wt=94025
     Region          <78..>239
                     /region_name="ArnT"
                     /note="PMT family glycosyltransferase ArnT/Agl22, involved
                     in glycosylation of proteins and lipid IVA [Cell
                     wall/membrane/envelope biogenesis]; COG1807"
                     /db_xref="CDD:441412"
     Region          247..321
                     /region_name="TMTC_DUF1736"
                     /note="Protein O-mannosyl-transferase TMTC, DUF1736;
                     pfam08409"
                     /db_xref="CDD:462468"
     Region          488..697
                     /region_name="TPR"
                     /note="Tetratricopeptide (TPR) repeat [General function
                     prediction only]; COG0457"
                     /db_xref="CDD:440225"
     Region          493..521
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          527..555
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(528,531..532,535..536,538,562,565..566,569..570,
                     572..573,596,610..611,614..615,618)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          560..590
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          595..634
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          642..671
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          646..>819
                     /region_name="TPR"
                     /note="Tetratricopeptide (TPR) repeat [General function
                     prediction only]; COG0457"
                     /db_xref="CDD:440225"
     Region          679..705
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(681..682,685..686,688,712,715..716,719..720,
                     722..723,780,783..784,787..788,791)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          710..774
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          779..807
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..836
                     /gene="TMTC2"
                     /coded_by="XM_054079749.1:234..2744"
                     /db_xref="GeneID:104054977"
ORIGIN      
        1 miaellsgal glalylntlg adfcyddsra iktnqdllpe tpwthifynd fwgtllthsg
       61 shksyrpfct lsfrinhavg gmdpwgyhlv nvllhatvtg lftnfsrilf gdgywtliag
      121 llfashpiht eavagivgra digaclffll slmcyvkhcs trgsspstwg wilgaglcag
      181 csmlwkeqgv tvlaisavyd ifvfhrlkmh qiipalckrk nltlsfsigl ltswgtallg
      241 irlywmgnkp psfsnsdnpa adsdsfltrt ltffylptkn lwlllcpdtl sfdwsmdavp
      301 llkavsdwrn lhtvafyagl lllayvslkg ssderecngr ivmngkqnan ghschsemey
      361 ktlevkssfv skeenglkkh emqklqlpst enivilslsl livpfipatn lffyvgfvia
      421 ervlyvpsmg fcllvtvgvr alyvkaqkrf lknlvfcsta alivfyglkt vvrngdwqne
      481 emlyrsgikv npakawgnlg nvlksqskis eaesayrnal yyrsnmadml ynlglllqen
      541 srfsealhyy klaigsrptl asaylntgii lmnqgkteea rrtflkcsei pdenlkdpha
      601 hkssvtscly nlgklyheqg hyedalmvyk eaiqkmprqf apqslynmmg eaymrmnrlp
      661 eaehwyvesl rsksdhipah ltygkllalt grkseaekyf vkaiqldptk gncymhygqf
      721 lleesrliea aemakkaael dntefdvvfn aahmlrqasl neeaekyyem aaglrpnypa
      781 almnlgailh lngklkeaee nyllalqlkp ddvitqsnlr klwnimekqg lktskt
//
LOCUS       XP_053935731             755 aa            linear   VRT 09-MAR-2023
DEFINITION  protein O-mannosyl-transferase TMTC2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053935731
VERSION     XP_053935731.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079756.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..755
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..755
                     /product="protein O-mannosyl-transferase TMTC2 isoform X2"
                     /calculated_mol_wt=84978
     Region          <3..>158
                     /region_name="ArnT"
                     /note="PMT family glycosyltransferase ArnT/Agl22, involved
                     in glycosylation of proteins and lipid IVA [Cell
                     wall/membrane/envelope biogenesis]; COG1807"
                     /db_xref="CDD:441412"
     Region          166..240
                     /region_name="TMTC_DUF1736"
                     /note="Protein O-mannosyl-transferase TMTC, DUF1736;
                     pfam08409"
                     /db_xref="CDD:462468"
     Region          407..616
                     /region_name="TPR"
                     /note="Tetratricopeptide (TPR) repeat [General function
                     prediction only]; COG0457"
                     /db_xref="CDD:440225"
     Region          412..440
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          446..474
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(447,450..451,454..455,457,481,484..485,488..489,
                     491..492,515,529..530,533..534,537)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          479..509
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          514..553
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          561..590
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          565..>738
                     /region_name="TPR"
                     /note="Tetratricopeptide (TPR) repeat [General function
                     prediction only]; COG0457"
                     /db_xref="CDD:440225"
     Region          598..624
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(600..601,604..605,607,631,634..635,638..639,
                     641..642,699,702..703,706..707,710)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          629..693
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          698..726
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..755
                     /gene="TMTC2"
                     /coded_by="XM_054079756.1:213..2480"
                     /db_xref="GeneID:104054977"
ORIGIN      
        1 mdpwgyhlvn vllhatvtgl ftnfsrilfg dgywtliagl lfashpihte avagivgrad
       61 igaclfflls lmcyvkhcst rgsspstwgw ilgaglcagc smlwkeqgvt vlaisavydi
      121 fvfhrlkmhq iipalckrkn ltlsfsigll tswgtallgi rlywmgnkpp sfsnsdnpaa
      181 dsdsfltrtl tffylptknl wlllcpdtls fdwsmdavpl lkavsdwrnl htvafyagll
      241 llayvslkgs sderecngri vmngkqnang hschsemeyk tlevkssfvs keenglkkhe
      301 mqklqlpste nivilslsll ivpfipatnl ffyvgfviae rvlyvpsmgf cllvtvgvra
      361 lyvkaqkrfl knlvfcstaa livfyglktv vrngdwqnee mlyrsgikvn pakawgnlgn
      421 vlksqskise aesayrnaly yrsnmadmly nlglllqens rfsealhyyk laigsrptla
      481 saylntgiil mnqgkteear rtflkcseip denlkdphah kssvtsclyn lgklyheqgh
      541 yedalmvyke aiqkmprqfa pqslynmmge aymrmnrlpe aehwyveslr sksdhipahl
      601 tygkllaltg rkseaekyfv kaiqldptkg ncymhygqfl leesrlieaa emakkaaeld
      661 ntefdvvfna ahmlrqasln eeaekyyema aglrpnypaa lmnlgailhl ngklkeaeen
      721 yllalqlkpd dvitqsnlrk lwnimekqgl ktskt
//
LOCUS       XP_009555456             803 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protease serine 7 isoform X1 [Cuculus canorus].
ACCESSION   XP_009555456
VERSION     XP_009555456.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557161.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555456.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..803
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..803
                     /product="transmembrane protease serine 7 isoform X1"
                     /calculated_mol_wt=90131
     Region          67..165
                     /region_name="SEA"
                     /note="SEA domain; pfam01390"
                     /db_xref="CDD:460188"
     Site            order(227,229,244,249,288,312,314,316..317)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     Region          231..301
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cl00049"
                     /db_xref="CDD:412131"
     Region          442..476
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(447,455,466..467)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(459,462,466,472..473)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            469..473
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          480..511
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cl00104"
                     /db_xref="CDD:412164"
     Region          517..546
                     /region_name="LDLa"
                     /note="Low-density lipoprotein receptor domain class A;
                     smart00192"
                     /db_xref="CDD:197566"
     Site            order(522,530,542..543)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Region          565..795
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            566
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(606,654,750)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(744,771,773)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..803
                     /gene="TMPRSS7"
                     /coded_by="XM_009557161.2:12..2423"
                     /db_xref="GeneID:104055964"
ORIGIN      
        1 mvaaedklvk rilartkhgk lkkkdkllwn fqnkiilftl ilfilgvvtw tllwlfivqa
       61 enkdalyfvg lfrvaniefl peyrqkqske flsvaqnvqh vmnlvyttss fskfykqstv
      121 sevsnnnngg llvhfwivfv vpqakgqvlc edcvaailkd siqtsivnrt svgslqglav
      181 dmdsivlsag lrsdywsttg tgtncmydly adrlherfpl dihatsggti cyfkliasvg
      241 hlirlsivfl qieadncitd sltiydslmp ikhkilyrac epadslvslv stnnlmlvmf
      301 kaaqmkeqke fhgyfevitq ekcgkaivtk ekmgyegrit spyypsyypp nclcawnfqt
      361 pqkslgialk fhnytisekn ikgcergwwk inermycgyy vdhqtvfhia ssavnielqc
      421 sskvsekpll veygsynise pcppgyfkcs tglcvqqmhr cdginncfde sdelfcvdpe
      481 wncnssfaiq dnllvcngvs dcengkdeqn cthsipctnh tfkcrnnici rkqnakcdgi
      541 vdcidgsdes scscgsskss npisrivggm nteegewpwq vslhfvgaay cgasviskew
      601 lvsaahcfqg skladprawr ahlgmqiqgr akfvsavrri ivheyyndrn ydydiallql
      661 skpwpdtmsh viqpicvppf shkvrsgdkc witgwgqkqe addegsailq kaeveiidqt
      721 lchstygiit armfcaglms gkrdgckgds ggplscqnnr dgkwflagiv swgygcgrpn
      781 fpgvytrvsn faqwihkyvp stl
//
LOCUS       XP_053935747             790 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protease serine 7 isoform X2 [Cuculus canorus].
ACCESSION   XP_053935747
VERSION     XP_053935747.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079772.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..790
                     /product="transmembrane protease serine 7 isoform X2"
                     /calculated_mol_wt=88734
     Region          67..165
                     /region_name="SEA"
                     /note="SEA domain; pfam01390"
                     /db_xref="CDD:460188"
     Site            order(214,216,231,236,275,299,301,303..304)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     Region          218..288
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cl00049"
                     /db_xref="CDD:412131"
     Region          429..463
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(434,442,453..454)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(446,449,453,459..460)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            456..460
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          467..498
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cl00104"
                     /db_xref="CDD:412164"
     Region          504..533
                     /region_name="LDLa"
                     /note="Low-density lipoprotein receptor domain class A;
                     smart00192"
                     /db_xref="CDD:197566"
     Site            order(509,517,529..530)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Region          552..782
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            553
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(593,641,737)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(731,758,760)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..790
                     /gene="TMPRSS7"
                     /coded_by="XM_054079772.1:12..2384"
                     /db_xref="GeneID:104055964"
ORIGIN      
        1 mvaaedklvk rilartkhgk lkkkdkllwn fqnkiilftl ilfilgvvtw tllwlfivqa
       61 enkdalyfvg lfrvaniefl peyrqkqske flsvaqnvqh vmnlvyttss fskfykqstv
      121 sevsnnnngg llvhfwivfv vpqakgqvlc edcvaailkd siqtsivnrt svgslqglav
      181 dmdsivlsgt ncmydlyadr lherfpldih atsggticyf kliasvghli rlsivflqie
      241 adncitdslt iydslmpikh kilyracepa dslvslvstn nlmlvmfkaa qmkeqkefhg
      301 yfevitqekc gkaivtkekm gyegritspy ypsyyppncl cawnfqtpqk slgialkfhn
      361 ytiseknikg cergwwkine rmycgyyvdh qtvfhiassa vnielqcssk vsekpllvey
      421 gsynisepcp pgyfkcstgl cvqqmhrcdg inncfdesde lfcvdpewnc nssfaiqdnl
      481 lvcngvsdce ngkdeqncth sipctnhtfk crnnicirkq nakcdgivdc idgsdesscs
      541 cgsskssnpi srivggmnte egewpwqvsl hfvgaaycga sviskewlvs aahcfqgskl
      601 adprawrahl gmqiqgrakf vsavrriivh eyyndrnydy diallqlskp wpdtmshviq
      661 picvppfshk vrsgdkcwit gwgqkqeadd egsailqkae veiidqtlch stygiitarm
      721 fcaglmsgkr dgckgdsggp lscqnnrdgk wflagivswg ygcgrpnfpg vytrvsnfaq
      781 wihkyvpstl
//
LOCUS       XP_053935753             764 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protease serine 7 isoform X3 [Cuculus canorus].
ACCESSION   XP_053935753
VERSION     XP_053935753.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079778.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..764
                     /product="transmembrane protease serine 7 isoform X3"
                     /calculated_mol_wt=85859
     Region          67..165
                     /region_name="SEA"
                     /note="SEA domain; pfam01390"
                     /db_xref="CDD:460188"
     Site            order(227,229,244,249,288,312,314,316..317)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     Region          231..301
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cl00049"
                     /db_xref="CDD:412131"
     Region          442..476
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(447,455,466..467)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(459,462,466,472..473)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            469..473
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          480..511
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cl00104"
                     /db_xref="CDD:412164"
     Region          526..756
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            527
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(567,615,711)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(705,732,734)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..764
                     /gene="TMPRSS7"
                     /coded_by="XM_054079778.1:12..2306"
                     /db_xref="GeneID:104055964"
ORIGIN      
        1 mvaaedklvk rilartkhgk lkkkdkllwn fqnkiilftl ilfilgvvtw tllwlfivqa
       61 enkdalyfvg lfrvaniefl peyrqkqske flsvaqnvqh vmnlvyttss fskfykqstv
      121 sevsnnnngg llvhfwivfv vpqakgqvlc edcvaailkd siqtsivnrt svgslqglav
      181 dmdsivlsag lrsdywsttg tgtncmydly adrlherfpl dihatsggti cyfkliasvg
      241 hlirlsivfl qieadncitd sltiydslmp ikhkilyrac epadslvslv stnnlmlvmf
      301 kaaqmkeqke fhgyfevitq ekcgkaivtk ekmgyegrit spyypsyypp nclcawnfqt
      361 pqkslgialk fhnytisekn ikgcergwwk inermycgyy vdhqtvfhia ssavnielqc
      421 sskvsekpll veygsynise pcppgyfkcs tglcvqqmhr cdginncfde sdelfcvdpe
      481 wncnssfaiq dnllvcngvs dcengkdeqn cthscgssks snpisrivgg mnteegewpw
      541 qvslhfvgaa ycgasviske wlvsaahcfq gskladpraw rahlgmqiqg rakfvsavrr
      601 iivheyyndr nydydiallq lskpwpdtms hviqpicvpp fshkvrsgdk cwitgwgqkq
      661 eaddegsail qkaeveiidq tlchstygii tarmfcaglm sgkrdgckgd sggplscqnn
      721 rdgkwflagi vswgygcgrp nfpgvytrvs nfaqwihkyv pstl
//
LOCUS       XP_053935757             702 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protease serine 7 isoform X4 [Cuculus canorus].
ACCESSION   XP_053935757
VERSION     XP_053935757.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079782.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..702
                     /product="transmembrane protease serine 7 isoform X4"
                     /calculated_mol_wt=78232
     Region          <1..64
                     /region_name="SEA"
                     /note="SEA domain; pfam01390"
                     /db_xref="CDD:460188"
     Site            order(126,128,143,148,187,211,213,215..216)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     Region          130..200
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cl00049"
                     /db_xref="CDD:412131"
     Region          341..375
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(346,354,365..366)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(358,361,365,371..372)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            368..372
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          416..445
                     /region_name="LDLa"
                     /note="Low-density lipoprotein receptor domain class A;
                     smart00192"
                     /db_xref="CDD:197566"
     Site            order(421,429,441..442)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Region          464..694
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            465
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(505,553,649)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(643,670,672)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..702
                     /gene="TMPRSS7"
                     /coded_by="XM_054079782.1:34..2142"
                     /db_xref="GeneID:104055964"
ORIGIN      
        1 mnlvyttssf skfykqstvs evsnnnnggl lvhfwivfvv pqakgqvlce dcvaailkds
       61 iqtsivnrts vgslqglavd mdsivlsagl rsdywsttgt gtncmydlya drlherfpld
      121 ihatsggtic yfkliasvgh lirlsivflq ieadncitds ltiydslmpi khkilyrace
      181 padslvslvs tnnlmlvmfk aaqmkeqkef hgyfevitqe kcgkaivtke kmgyegrits
      241 pyypsyyppn clcawnfqtp qkslgialkf hnytisekni kgcergwwki nermycgyyv
      301 dhqtvfhias savnielqcs skvsekpllv eygsynisep cppgyfkcst glcvqqmhrc
      361 dginncfdes delfcvdpew ncnssfaiqd nllvcngvsd cengkdeqnc thsipctnht
      421 fkcrnnicir kqnakcdgiv dcidgsdess cscgsskssn pisrivggmn teegewpwqv
      481 slhfvgaayc gasviskewl vsaahcfqgs kladprawra hlgmqiqgra kfvsavrrii
      541 vheyyndrny dydiallqls kpwpdtmshv iqpicvppfs hkvrsgdkcw itgwgqkqea
      601 ddegsailqk aeveiidqtl chstygiita rmfcaglmsg krdgckgdsg gplscqnnrd
      661 gkwflagivs wgygcgrpnf pgvytrvsnf aqwihkyvps tl
//
LOCUS       XP_053935767             259 aa            linear   VRT 09-MAR-2023
DEFINITION  myeloid leukemia factor 2 [Cuculus canorus].
ACCESSION   XP_053935767
VERSION     XP_053935767.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079792.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..259
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..259
                     /product="myeloid leukemia factor 2"
                     /calculated_mol_wt=28925
     Region          42..213
                     /region_name="Mlf1IP"
                     /note="Myelodysplasia-myeloid leukemia factor
                     1-interacting protein; pfam10248"
                     /db_xref="CDD:463022"
     CDS             1..259
                     /gene="MLF2"
                     /coded_by="XM_054079792.1:143..922"
                     /db_xref="GeneID:104064370"
ORIGIN      
        1 mlgpwkqqgp ppsagsmfrl vrdgepddpm famdpfaihr qhmnrmlsgs fgfgpllgit
       61 dgttpgarqa grrmqagavs pfgmlgmagg fidmfgmmnd mignmehmts gancqtftss
      121 tvisysnlgd gpkvyqetse mrsapggire trrtvrdsds gleqmsighh irdrahimqr
      181 srnhrtgdqe erqdyinmde sdaaafddew rretsrfrpq rgldyrrheg ssgrraegtr
      241 laiqgpedsp srqsrrydw
//
LOCUS       XP_053935779             105 aa            linear   VRT 09-MAR-2023
DEFINITION  parathymosin [Cuculus canorus].
ACCESSION   XP_053935779
VERSION     XP_053935779.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079804.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..105
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..105
                     /product="parathymosin"
                     /calculated_mol_wt=11829
     CDS             1..105
                     /gene="PTMS"
                     /coded_by="XM_054079804.1:267..584"
                     /db_xref="GeneID:128853639"
ORIGIN      
        1 msekraeeap aelsakemke kkekleektv hkekkkeive deengaeedd eenpddvdee
       61 eggdedeegd engqeqdgha ekrsaeeeed evdpkrqkke ngssa
//
LOCUS       XP_053935795             552 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-18 receptor 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053935795
VERSION     XP_053935795.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079820.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..552
                     /product="interleukin-18 receptor 1 isoform X1"
                     /calculated_mol_wt=63871
     Region          28..>92
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          34..37
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          52..56
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          77..81
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          132..207
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          137..141
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          152..155
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          168..171
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          181..186
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          198..201
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          225..325
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          232..236
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          249..253
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          290..294
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          305..310
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          317..320
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          383..532
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..552
                     /gene="IL18R1"
                     /coded_by="XM_054079820.1:335..1993"
                     /db_xref="GeneID:104056639"
ORIGIN      
        1 mtliifflmf itesatkklc plratidvle geyfylcyle ptqehfqedv ytinwykenn
       61 gkqqliketq rivpqmnfle fwpvelsdsg nysvthsngk pnftiqkwtl nvleknkssc
      121 fnknhlttel knagtghslk csdlsvngne nitwykdckn yenetereld fktltvqhsg
      181 iytckiligh egkiyhstnt iklvveedap edvpleivgr deeietekgk eevlnctgfl
      241 gyymredanl ywlinqkfpe kcsdipedep siceedlkkl qlgnkfyvtr llqirkvtde
      301 dmhhnftcml qadertqiki vklkkgntrd lpshvfttgm vlallfpcva vavvvlcvvf
      361 rvdlvlfyrt icrrddtaed gkeydafvsy lkdcispsee erefalktlp mileenfgyk
      421 lciferdvsp ggavvddihs fidksrrliv ilsqnyisdr tiyelgsglh kalverktei
      481 ilieympisd ynflpeslsl lpskrvvkwk kdkslpvnsr fwknlrylmp akpskintke
      541 hynnhdlgse ga
//
LOCUS       XP_053935802             552 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-18 receptor 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053935802
VERSION     XP_053935802.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079827.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..552
                     /product="interleukin-18 receptor 1 isoform X1"
                     /calculated_mol_wt=63871
     Region          28..>92
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          34..37
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          52..56
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          77..81
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          132..207
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          137..141
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          152..155
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          168..171
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          181..186
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          198..201
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          225..325
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          232..236
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          249..253
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          290..294
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          305..310
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          317..320
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          383..532
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..552
                     /gene="IL18R1"
                     /coded_by="XM_054079827.1:401..2059"
                     /db_xref="GeneID:104056639"
ORIGIN      
        1 mtliifflmf itesatkklc plratidvle geyfylcyle ptqehfqedv ytinwykenn
       61 gkqqliketq rivpqmnfle fwpvelsdsg nysvthsngk pnftiqkwtl nvleknkssc
      121 fnknhlttel knagtghslk csdlsvngne nitwykdckn yenetereld fktltvqhsg
      181 iytckiligh egkiyhstnt iklvveedap edvpleivgr deeietekgk eevlnctgfl
      241 gyymredanl ywlinqkfpe kcsdipedep siceedlkkl qlgnkfyvtr llqirkvtde
      301 dmhhnftcml qadertqiki vklkkgntrd lpshvfttgm vlallfpcva vavvvlcvvf
      361 rvdlvlfyrt icrrddtaed gkeydafvsy lkdcispsee erefalktlp mileenfgyk
      421 lciferdvsp ggavvddihs fidksrrliv ilsqnyisdr tiyelgsglh kalverktei
      481 ilieympisd ynflpeslsl lpskrvvkwk kdkslpvnsr fwknlrylmp akpskintke
      541 hynnhdlgse ga
//
LOCUS       XP_009556202             552 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-18 receptor 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_009556202
VERSION     XP_009556202.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557907.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556202.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..552
                     /product="interleukin-18 receptor 1 isoform X1"
                     /calculated_mol_wt=63871
     Region          28..>92
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          34..37
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          52..56
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          77..81
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          132..207
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          137..141
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          152..155
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          168..171
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          181..186
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          198..201
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          225..325
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          232..236
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          249..253
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          290..294
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          305..310
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          317..320
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          383..532
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..552
                     /gene="IL18R1"
                     /coded_by="XM_009557907.2:232..1890"
                     /db_xref="GeneID:104056639"
ORIGIN      
        1 mtliifflmf itesatkklc plratidvle geyfylcyle ptqehfqedv ytinwykenn
       61 gkqqliketq rivpqmnfle fwpvelsdsg nysvthsngk pnftiqkwtl nvleknkssc
      121 fnknhlttel knagtghslk csdlsvngne nitwykdckn yenetereld fktltvqhsg
      181 iytckiligh egkiyhstnt iklvveedap edvpleivgr deeietekgk eevlnctgfl
      241 gyymredanl ywlinqkfpe kcsdipedep siceedlkkl qlgnkfyvtr llqirkvtde
      301 dmhhnftcml qadertqiki vklkkgntrd lpshvfttgm vlallfpcva vavvvlcvvf
      361 rvdlvlfyrt icrrddtaed gkeydafvsy lkdcispsee erefalktlp mileenfgyk
      421 lciferdvsp ggavvddihs fidksrrliv ilsqnyisdr tiyelgsglh kalverktei
      481 ilieympisd ynflpeslsl lpskrvvkwk kdkslpvnsr fwknlrylmp akpskintke
      541 hynnhdlgse ga
//
LOCUS       XP_053935814             552 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-18 receptor 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053935814
VERSION     XP_053935814.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079839.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..552
                     /product="interleukin-18 receptor 1 isoform X1"
                     /calculated_mol_wt=63871
     Region          28..>92
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          34..37
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          52..56
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          77..81
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          132..207
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          137..141
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          152..155
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          168..171
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          181..186
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          198..201
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          225..325
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          232..236
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          249..253
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          290..294
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          305..310
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          317..320
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          383..532
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..552
                     /gene="IL18R1"
                     /coded_by="XM_054079839.1:415..2073"
                     /db_xref="GeneID:104056639"
ORIGIN      
        1 mtliifflmf itesatkklc plratidvle geyfylcyle ptqehfqedv ytinwykenn
       61 gkqqliketq rivpqmnfle fwpvelsdsg nysvthsngk pnftiqkwtl nvleknkssc
      121 fnknhlttel knagtghslk csdlsvngne nitwykdckn yenetereld fktltvqhsg
      181 iytckiligh egkiyhstnt iklvveedap edvpleivgr deeietekgk eevlnctgfl
      241 gyymredanl ywlinqkfpe kcsdipedep siceedlkkl qlgnkfyvtr llqirkvtde
      301 dmhhnftcml qadertqiki vklkkgntrd lpshvfttgm vlallfpcva vavvvlcvvf
      361 rvdlvlfyrt icrrddtaed gkeydafvsy lkdcispsee erefalktlp mileenfgyk
      421 lciferdvsp ggavvddihs fidksrrliv ilsqnyisdr tiyelgsglh kalverktei
      481 ilieympisd ynflpeslsl lpskrvvkwk kdkslpvnsr fwknlrylmp akpskintke
      541 hynnhdlgse ga
//
LOCUS       XP_053935824             477 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-18 receptor 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053935824
VERSION     XP_053935824.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079849.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..477
                     /product="interleukin-18 receptor 1 isoform X2"
                     /calculated_mol_wt=54863
     Region          57..132
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          62..66
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          77..80
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          93..96
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          106..111
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          123..126
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          150..250
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          157..161
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          174..178
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          215..219
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          230..235
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          242..245
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          308..457
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..477
                     /gene="IL18R1"
                     /coded_by="XM_054079849.1:555..1988"
                     /db_xref="GeneID:104056639"
ORIGIN      
        1 mnflefwpve lsdsgnysvt hsngkpnfti qkwtlnvlek nksscfnknh lttelknagt
       61 ghslkcsdls vngnenitwy kdcknyenet ereldfktlt vqhsgiytck ilighegkiy
      121 hstntiklvv eedapedvpl eivgrdeeie tekgkeevln ctgflgyymr edanlywlin
      181 qkfpekcsdi pedepsicee dlkklqlgnk fyvtrllqir kvtdedmhhn ftcmlqader
      241 tqikivklkk gntrdlpshv fttgmvlall fpcvavavvv lcvvfrvdlv lfyrticrrd
      301 dtaedgkeyd afvsylkdci spseeerefa lktlpmilee nfgyklcife rdvspggavv
      361 ddihsfidks rrlivilsqn yisdrtiyel gsglhkalve rkteiiliey mpisdynflp
      421 eslsllpskr vvkwkkdksl pvnsrfwknl rylmpakpsk intkehynnh dlgsega
//
LOCUS       XP_053935831             526 aa            linear   VRT 09-MAR-2023
DEFINITION  vang-like protein 1 [Cuculus canorus].
ACCESSION   XP_053935831
VERSION     XP_053935831.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079856.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..526
                     /product="vang-like protein 1"
                     /calculated_mol_wt=59484
     Region          27..526
                     /region_name="Strabismus"
                     /note="Strabismus protein; pfam06638"
                     /db_xref="CDD:461971"
     CDS             1..526
                     /gene="VANGL1"
                     /coded_by="XM_054079856.1:281..1861"
                     /db_xref="GeneID:104055809"
ORIGIN      
        1 msaamdtest ysgyshysgh skkahrqgsr drhksprskd gsrseksvti qtppaepllg
       61 ndasraedgq ddnwgettta itgtsehsis qediariskd ledsvgldck rylgltvaav
      121 lgllvfltpi afillpqilw rddlepcgtv ceglfisvaf kllilligtw alffrqpkad
      181 iprvfvfral llvliflfvf sywlfygvri ldskdtnyqg ivqyavslvd allfihylai
      241 vllelrqlqp mftvkvvrst dgesryyslg hlsiqraalv vlenyyrdft vynpglltas
      301 ksraakhmag lkvynvdgpg nnasgqsram iaaaarrrds shnelyyeea dqerrvkkrr
      361 arlvvaveea fthikrlqae eqqkapgemm dpreaaqaif psmaralqky lrttrqqqyh
      421 smesilqhls fcitnnmtpk aflerylnpg ptlqydrdrw fskqwtlvse eavtsglqdg
      481 ivfvlkcldf slvvnvkkip fiklseefid pkshkfvlrl qsetsv
//
LOCUS       XP_009555517             346 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 52I1-like [Cuculus canorus].
ACCESSION   XP_009555517
VERSION     XP_009555517.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557222.2
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555517.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 10% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..346
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..346
                     /product="olfactory receptor 52I1-like"
                     /calculated_mol_wt=38541
     Region          60..331
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          62..86
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          95..117
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          133..155
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          178..194
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          231..254
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          270..292
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          303..328
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..346
                     /gene="LOC104056013"
                     /coded_by="XM_009557222.2:1..1041"
                     /db_xref="GeneID:104056013"
ORIGIN      
        1 mqgphlipis sghpraqnya lfgkhksntl pipsdpfsqp nsssscfilv gvpgleafst
       61 flgilfcsgy iialvgngvv llvirldnsl raplhfflgm mavidvvmvt siipkmlstf
      121 wlksreigyk acfvqmflvh sttseesgvl lamavdryva ichplryqii ldhrtvaqia
      181 laivlraflf iipllvmvmn lpycrsrvvp hsycehiavv klacadprps rlysvagssl
      241 ivgmdmafia vsyrmilktv lqkkwcrkaf stcachvcvm llyyipgmvs iwaqqfdssv
      301 stwarvllad lylilptmln pivysmrtkq irkallrtlf srmarv
//
LOCUS       XP_053935847             224 aa            linear   VRT 09-MAR-2023
DEFINITION  claudin-8-like isoform X1 [Cuculus canorus].
ACCESSION   XP_053935847
VERSION     XP_053935847.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079872.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..224
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..224
                     /product="claudin-8-like isoform X1"
                     /calculated_mol_wt=24526
     Region          5..182
                     /region_name="PMP22_Claudin"
                     /note="PMP-22/EMP/MP20/Claudin family; cl21598"
                     /db_xref="CDD:473919"
     CDS             1..224
                     /gene="LOC104064770"
                     /coded_by="XM_054079872.1:264..938"
                     /db_xref="GeneID:104064770"
ORIGIN      
        1 mgsgalqiag llvgaigmig tfavtgmpqw rvsafietni ivfetiwegl wmhcirqani
       61 rmqckvydsv lalspdlqas rglmcagsal sflafmiaii gmkctrctws swqakgyiil
      121 tagllfilsg tvelipvcwv antiisdfyn pvvnvaqkre lgealylgwv aavcliaaga
      181 ifccfchcce knrsyeysps iqyptqnehl pskmessysk sqyv
//
LOCUS       XP_009565433             221 aa            linear   VRT 09-MAR-2023
DEFINITION  claudin-8-like isoform X2 [Cuculus canorus].
ACCESSION   XP_009565433
VERSION     XP_009565433.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009567138.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009565433.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..221
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..221
                     /product="claudin-8-like isoform X2"
                     /calculated_mol_wt=24136
     Region          5..182
                     /region_name="PMP22_Claudin"
                     /note="PMP-22/EMP/MP20/Claudin family; cl21598"
                     /db_xref="CDD:473919"
     CDS             1..221
                     /gene="LOC104064770"
                     /coded_by="XM_009567138.2:272..937"
                     /db_xref="GeneID:104064770"
ORIGIN      
        1 mgsgalqiag llvgaigmig tfavtgmpqw rvsafietni ivfetiwegl wmhcirqani
       61 rmqckvydsv lalspdlqas rglmcagsal sflafmiaii gmkctrctws swqakgyiil
      121 tagllfilsg tvelipvcwv antiisdfyn pvvnvaqkre lgealylgwv aavcliaaga
      181 ifccfchcce knrsyeysps iqyptqnehl pskmessysk s
//
LOCUS       XP_009558814            1198 aa            linear   VRT 09-MAR-2023
DEFINITION  myosin-binding protein C, slow-type isoform X1 [Cuculus canorus].
ACCESSION   XP_009558814
VERSION     XP_009558814.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560519.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009558814.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1198
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1198
                     /product="myosin-binding protein C, slow-type isoform X1"
                     /calculated_mol_wt=134280
     Region          56..156
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          72..76
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          88..92
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          122..126
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          136..141
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          149..152
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          206..239
                     /region_name="THB"
                     /note="Tri-helix bundle domain; pfam18362"
                     /db_xref="CDD:465725"
     Region          253..334
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          267..271
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          279..283
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          304..308
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          318..323
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          327..330
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..425
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          356..360
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          368..372
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          395..399
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          409..415
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          431..>498
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          447..451
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          458..462
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          483..487
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          530..612
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          540..544
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          553..557
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          578..582
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          592..597
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          605..608
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          616..705
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(616,682,697)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(698..699,701..702)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          715..849
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Region          876..956
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          885..889
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409406"
     Region          898..902
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409406"
     Region          922..926
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409406"
     Region          936..941
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409406"
     Region          949..952
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409406"
     Region          960..1043
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(960,1025,1040)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          1075..1164
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          1093..1096
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          1105..1109
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          1130..1134
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          1144..1149
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..1198
                     /gene="MYBPC1"
                     /coded_by="XM_009560519.2:152..3748"
                     /db_xref="GeneID:104058930"
ORIGIN      
        1 mpeptkkdet etesappppe qkpaqdgetg kgkvwslgeg apeegekrdd sqrstlfvek
       61 pqsgsvsvgg nitfiakvea kdllrkpnvk wfkgkwmdla skagkhlqlk esferhtkih
      121 tfemhiiqak enyagnyrce vsykdkfdsc sfdlevtess qaapsidirs afkrsgdgqd
      181 dageldfsgl lkrrevkqqe eepevdvwel lknanpseye kiafqygitd lrgmlkrlkr
      241 mrrevkksaa fakgldpayq vdkggkvrfm veladptvel kwykngqeir psakyifehk
      301 gnqrilfinn csmaddaryy vtagdekcst elfvrdppil vtkgledtst yvgervelsc
      361 evseddanvk wfkngveltn epksryrikv egkkhtliie eaakndnaty svmttggqse
      421 akltvdlrpl kislaledqt vrlgqeihlk ceisenvegk wykngqliea sdrvklyhkg
      481 rihrfviasa avddegeymf vpdayninip ckvhvvdppk lhldglgegn tvtvvagskl
      541 rleipitgep tpkvtwskgd kwvtdsgrir aetypdsscl vidaaereds gpfrislkne
      601 agedtavini kvvdvpdppq apnvtevged wcvmtweppa ndggspilgy fierkkkqss
      661 rwmrlnfelc kettfepkkm iegvayevrv favnaigmsk psmpsksfvp lavtspptll
      721 avdgvtdtsv tmkwrppdhi gaagldgyvi eycfegsirs shckaetnqs edltqqgsvq
      781 asfdgfsqgi stdlaeelve ppfnleadew ivanpeltdk lkftinglpt gskilvrvka
      841 vnaagesepr yhpqpilvke vieppkirlp rhlkqtytrr vgetvnlvip fqgrprakvs
      901 wqkngspidk nqinirnten dtiifirkae rshsgeydmt vevenlvdka tidiqivdrp
      961 gppeivtied vwgenvnlsw kppkdngnaa itgytiqkad kksmewftvm ehyhrtsati
     1021 nelvigneyy frvfaenmcg lsedatmtke saliakdgkv ykypvyddfd fterplftqp
     1081 lvntfavagy nstlncsvrg npkpkitwlk nkvvimndpk yrmfsnqgvc tleirkpspy
     1141 dggtytcrav nelgeaevdc klevkgglsf frllmdgvpp hiidsymrev lagktegk
//
LOCUS       XP_053935866            1175 aa            linear   VRT 09-MAR-2023
DEFINITION  myosin-binding protein C, slow-type isoform X2 [Cuculus canorus].
ACCESSION   XP_053935866
VERSION     XP_053935866.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079891.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1175
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1175
                     /product="myosin-binding protein C, slow-type isoform X2"
                     /calculated_mol_wt=131892
     Region          33..133
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          49..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          65..69
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          113..118
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          126..129
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          183..216
                     /region_name="THB"
                     /note="Tri-helix bundle domain; pfam18362"
                     /db_xref="CDD:465725"
     Region          230..311
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          244..248
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          256..260
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          281..285
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          295..300
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          304..307
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          318..402
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          333..337
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          345..349
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          372..376
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          386..392
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          408..>475
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          424..428
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          435..439
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          460..464
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          507..589
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          517..521
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          530..534
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          555..559
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          569..574
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          582..585
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          593..682
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(593,659,674)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(675..676,678..679)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          692..826
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Region          853..933
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          862..866
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409406"
     Region          875..879
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409406"
     Region          899..903
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409406"
     Region          913..918
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409406"
     Region          926..929
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409406"
     Region          937..1020
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(937,1002,1017)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          1052..1141
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          1070..1073
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          1082..1086
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          1107..1111
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          1121..1126
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..1175
                     /gene="MYBPC1"
                     /coded_by="XM_054079891.1:30..3557"
                     /db_xref="GeneID:104058930"
ORIGIN      
        1 mskpaerkds vwslgegape egekrddsqr stlfvekpqs gsvsvggnit fiakveakdl
       61 lrkpnvkwfk gkwmdlaska gkhlqlkesf erhtkihtfe mhiiqakeny agnyrcevsy
      121 kdkfdscsfd levtessqaa psidirsafk rsgdgqddag eldfsgllkr revkqqeeep
      181 evdvwellkn anpseyekia fqygitdlrg mlkrlkrmrr evkksaafak gldpayqvdk
      241 ggkvrfmvel adptvelkwy kngqeirpsa kyifehkgnq rilfinncsm addaryyvta
      301 gdekcstelf vrdppilvtk gledtstyvg ervelscevs eddanvkwfk ngveltnepk
      361 sryrikvegk khtliieeaa kndnatysvm ttggqseakl tvdlrplkis laledqtvrl
      421 gqeihlkcei senvegkwyk ngqlieasdr vklyhkgrih rfviasaavd degeymfvpd
      481 ayninipckv hvvdppklhl dglgegntvt vvagsklrle ipitgeptpk vtwskgdkwv
      541 tdsgriraet ypdssclvid aaeredsgpf rislkneage dtavinikvv dvpdppqapn
      601 vtevgedwcv mtweppandg gspilgyfie rkkkqssrwm rlnfelcket tfepkkmieg
      661 vayevrvfav naigmskpsm psksfvplav tspptllavd gvtdtsvtmk wrppdhigaa
      721 gldgyvieyc fegsirsshc kaetnqsedl tqqgsvqasf dgfsqgistd laeelveppf
      781 nleadewiva npeltdklkf tinglptgsk ilvrvkavna agesepryhp qpilvkevie
      841 ppkirlprhl kqtytrrvge tvnlvipfqg rprakvswqk ngspidknqi nirntendti
      901 ifirkaersh sgeydmtvev enlvdkatid iqivdrpgpp eivtiedvwg envnlswkpp
      961 kdngnaaitg ytiqkadkks mewftvmehy hrtsatinel vigneyyfrv faenmcglse
     1021 datmtkesal iakdgkvyky pvyddfdfte rplftqplvn tfavagynst lncsvrgnpk
     1081 pkitwlknkv vimndpkyrm fsnqgvctle irkpspydgg tytcravnel geaevdckle
     1141 vkgglsffrl lmdgvpphii dsymrevlag ktegk
//
LOCUS       XP_053935874            1171 aa            linear   VRT 09-MAR-2023
DEFINITION  myosin-binding protein C, slow-type isoform X3 [Cuculus canorus].
ACCESSION   XP_053935874
VERSION     XP_053935874.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079899.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1171
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1171
                     /product="myosin-binding protein C, slow-type isoform X3"
                     /calculated_mol_wt=131358
     Region          56..156
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          72..76
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          88..92
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          122..126
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          136..141
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          149..152
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          206..239
                     /region_name="THB"
                     /note="Tri-helix bundle domain; pfam18362"
                     /db_xref="CDD:465725"
     Region          253..334
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          267..271
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          279..283
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          304..308
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          318..323
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          327..330
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..425
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          356..360
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          368..372
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          395..399
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          409..415
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          431..>498
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          447..451
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          458..462
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          483..487
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          530..612
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          540..544
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          553..557
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          578..582
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          592..597
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          605..608
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          616..705
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(616,682,697)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(698..699,701..702)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          715..822
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Region          849..929
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          858..862
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409406"
     Region          871..875
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409406"
     Region          895..899
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409406"
     Region          909..914
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409406"
     Region          922..925
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409406"
     Region          933..1016
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(933,998,1013)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          1048..1137
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          1066..1069
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          1078..1082
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          1103..1107
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          1117..1122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..1171
                     /gene="MYBPC1"
                     /coded_by="XM_054079899.1:152..3667"
                     /db_xref="GeneID:104058930"
ORIGIN      
        1 mpeptkkdet etesappppe qkpaqdgetg kgkvwslgeg apeegekrdd sqrstlfvek
       61 pqsgsvsvgg nitfiakvea kdllrkpnvk wfkgkwmdla skagkhlqlk esferhtkih
      121 tfemhiiqak enyagnyrce vsykdkfdsc sfdlevtess qaapsidirs afkrsgdgqd
      181 dageldfsgl lkrrevkqqe eepevdvwel lknanpseye kiafqygitd lrgmlkrlkr
      241 mrrevkksaa fakgldpayq vdkggkvrfm veladptvel kwykngqeir psakyifehk
      301 gnqrilfinn csmaddaryy vtagdekcst elfvrdppil vtkgledtst yvgervelsc
      361 evseddanvk wfkngveltn epksryrikv egkkhtliie eaakndnaty svmttggqse
      421 akltvdlrpl kislaledqt vrlgqeihlk ceisenvegk wykngqliea sdrvklyhkg
      481 rihrfviasa avddegeymf vpdayninip ckvhvvdppk lhldglgegn tvtvvagskl
      541 rleipitgep tpkvtwskgd kwvtdsgrir aetypdsscl vidaaereds gpfrislkne
      601 agedtavini kvvdvpdppq apnvtevged wcvmtweppa ndggspilgy fierkkkqss
      661 rwmrlnfelc kettfepkkm iegvayevrv favnaigmsk psmpsksfvp lavtspptll
      721 avdgvtdtsv tmkwrppdhi gaagldgyvi eycfegngfs qgistdlaee lveppfnlea
      781 dewivanpel tdklkfting lptgskilvr vkavnaages epryhpqpil vkevieppki
      841 rlprhlkqty trrvgetvnl vipfqgrpra kvswqkngsp idknqinirn tendtiifir
      901 kaershsgey dmtvevenlv dkatidiqiv drpgppeivt iedvwgenvn lswkppkdng
      961 naaitgytiq kadkksmewf tvmehyhrts atinelvign eyyfrvfaen mcglsedatm
     1021 tkesaliakd gkvykypvyd dfdfterplf tqplvntfav agynstlncs vrgnpkpkit
     1081 wlknkvvimn dpkyrmfsnq gvctleirkp spydggtytc ravnelgeae vdcklevkgg
     1141 lsffrllmdg vpphiidsym revlagkteg k
//
LOCUS       XP_053935881            1168 aa            linear   VRT 09-MAR-2023
DEFINITION  myosin-binding protein C, slow-type isoform X4 [Cuculus canorus].
ACCESSION   XP_053935881
VERSION     XP_053935881.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079906.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1168
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1168
                     /product="myosin-binding protein C, slow-type isoform X4"
                     /calculated_mol_wt=130991
     Region          56..156
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          72..76
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          88..92
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          122..126
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          136..141
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          149..152
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          206..239
                     /region_name="THB"
                     /note="Tri-helix bundle domain; pfam18362"
                     /db_xref="CDD:465725"
     Region          253..334
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          267..271
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          279..283
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          304..308
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          318..323
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          327..330
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..425
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          356..360
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          368..372
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          395..399
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          409..415
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          431..>498
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          447..451
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          458..462
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          483..487
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          530..612
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          540..544
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          553..557
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          578..582
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          592..597
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          605..608
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          616..705
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(616,682,697)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(698..699,701..702)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          715..849
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Region          876..956
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          885..889
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409406"
     Region          898..902
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409406"
     Region          922..926
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409406"
     Region          936..941
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409406"
     Region          949..952
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409406"
     Region          960..1043
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(960,1025,1040)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          1075..1164
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          1093..1096
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          1105..1109
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          1130..1134
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          1144..1149
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..1168
                     /gene="MYBPC1"
                     /coded_by="XM_054079906.1:152..3658"
                     /db_xref="GeneID:104058930"
ORIGIN      
        1 mpeptkkdet etesappppe qkpaqdgetg kgkvwslgeg apeegekrdd sqrstlfvek
       61 pqsgsvsvgg nitfiakvea kdllrkpnvk wfkgkwmdla skagkhlqlk esferhtkih
      121 tfemhiiqak enyagnyrce vsykdkfdsc sfdlevtess qaapsidirs afkrsgdgqd
      181 dageldfsgl lkrrevkqqe eepevdvwel lknanpseye kiafqygitd lrgmlkrlkr
      241 mrrevkksaa fakgldpayq vdkggkvrfm veladptvel kwykngqeir psakyifehk
      301 gnqrilfinn csmaddaryy vtagdekcst elfvrdppil vtkgledtst yvgervelsc
      361 evseddanvk wfkngveltn epksryrikv egkkhtliie eaakndnaty svmttggqse
      421 akltvdlrpl kislaledqt vrlgqeihlk ceisenvegk wykngqliea sdrvklyhkg
      481 rihrfviasa avddegeymf vpdayninip ckvhvvdppk lhldglgegn tvtvvagskl
      541 rleipitgep tpkvtwskgd kwvtdsgrir aetypdsscl vidaaereds gpfrislkne
      601 agedtavini kvvdvpdppq apnvtevged wcvmtweppa ndggspilgy fierkkkqss
      661 rwmrlnfelc kettfepkkm iegvayevrv favnaigmsk psmpsksfvp lavtspptll
      721 avdgvtdtsv tmkwrppdhi gaagldgyvi eycfegsirs shckaetnqs edltqqgsvq
      781 asfdgfsqgi stdlaeelve ppfnleadew ivanpeltdk lkftinglpt gskilvrvka
      841 vnaagesepr yhpqpilvke vieppkirlp rhlkqtytrr vgetvnlvip fqgrprakvs
      901 wqkngspidk nqinirnten dtiifirkae rshsgeydmt vevenlvdka tidiqivdrp
      961 gppeivtied vwgenvnlsw kppkdngnaa itgytiqkad kksmewftvm ehyhrtsati
     1021 nelvigneyy frvfaenmcg lsedatmtke saliakdgkv ykypvyddfd fterplftqp
     1081 lvntfavagy nstlncsvrg npkpkitwlk nkvvimndpk yrmfsnqgvc tleirkpspy
     1141 dggtytcrav nelgeaevdc klevkvtq
//
LOCUS       XP_053935889            1102 aa            linear   VRT 09-MAR-2023
DEFINITION  myosin-binding protein C, slow-type isoform X5 [Cuculus canorus].
ACCESSION   XP_053935889
VERSION     XP_053935889.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079914.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1102
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1102
                     /product="myosin-binding protein C, slow-type isoform X5"
                     /calculated_mol_wt=123761
     Region          <1..60
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          26..30
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          40..45
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          53..56
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          110..143
                     /region_name="THB"
                     /note="Tri-helix bundle domain; pfam18362"
                     /db_xref="CDD:465725"
     Region          157..238
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          171..175
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          183..187
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          208..212
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          222..227
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          231..234
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          245..329
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          260..264
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          272..276
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          299..303
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          313..319
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          335..>402
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          351..355
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          362..366
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          387..391
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          434..516
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          444..448
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          457..461
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          482..486
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          496..501
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          509..512
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          520..609
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(520,586,601)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(602..603,605..606)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          619..753
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Region          780..860
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          789..793
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409406"
     Region          802..806
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409406"
     Region          826..830
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409406"
     Region          840..845
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409406"
     Region          853..856
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409406"
     Region          864..947
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(864,929,944)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          979..1068
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          997..1000
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          1009..1013
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          1034..1038
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          1048..1053
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..1102
                     /gene="MYBPC1"
                     /coded_by="XM_054079914.1:472..3780"
                     /db_xref="GeneID:104058930"
ORIGIN      
        1 mdlaskagkh lqlkesferh tkihtfemhi iqakenyagn yrcevsykdk fdscsfdlev
       61 tessqaapsi dirsafkrsg dgqddageld fsgllkrrev kqqeeepevd vwellknanp
      121 seyekiafqy gitdlrgmlk rlkrmrrevk ksaafakgld payqvdkggk vrfmveladp
      181 tvelkwykng qeirpsakyi fehkgnqril finncsmadd aryyvtagde kcstelfvrd
      241 ppilvtkgle dtstyvgerv elscevsedd anvkwfkngv eltnepksry rikvegkkht
      301 liieeaaknd natysvmttg gqseakltvd lrplkislal edqtvrlgqe ihlkceisen
      361 vegkwykngq lieasdrvkl yhkgrihrfv iasaavddeg eymfvpdayn inipckvhvv
      421 dppklhldgl gegntvtvva gsklrleipi tgeptpkvtw skgdkwvtds griraetypd
      481 ssclvidaae redsgpfris lkneagedta vinikvvdvp dppqapnvte vgedwcvmtw
      541 eppandggsp ilgyfierkk kqssrwmrln felckettfe pkkmiegvay evrvfavnai
      601 gmskpsmpsk sfvplavtsp ptllavdgvt dtsvtmkwrp pdhigaagld gyvieycfeg
      661 sirsshckae tnqsedltqq gsvqasfdgf sqgistdlae elveppfnle adewivanpe
      721 ltdklkftin glptgskilv rvkavnaage sepryhpqpi lvkevieppk irlprhlkqt
      781 ytrrvgetvn lvipfqgrpr akvswqkngs pidknqinir ntendtiifi rkaershsge
      841 ydmtvevenl vdkatidiqi vdrpgppeiv tiedvwgenv nlswkppkdn gnaaitgyti
      901 qkadkksmew ftvmehyhrt satinelvig neyyfrvfae nmcglsedat mtkesaliak
      961 dgkvykypvy ddfdfterpl ftqplvntfa vagynstlnc svrgnpkpki twlknkvvim
     1021 ndpkyrmfsn qgvctleirk pspydggtyt cravnelgea evdcklevkg glsffrllmd
     1081 gvpphiidsy mrevlagkte gk
//
LOCUS       XP_053935897             252 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor Spi-C isoform X1 [Cuculus canorus].
ACCESSION   XP_053935897
VERSION     XP_053935897.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079922.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..252
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..252
                     /product="transcription factor Spi-C isoform X1"
                     /calculated_mol_wt=29030
     Region          115..196
                     /region_name="Ets"
                     /note="Ets-domain; pfam00178"
                     /db_xref="CDD:459700"
     CDS             1..252
                     /gene="SPIC"
                     /coded_by="XM_054079922.1:1..759"
                     /db_xref="GeneID:104058932"
ORIGIN      
        1 mflqsfpdqd vlgqafedal evlqqhsdre mhyspgyknc ltminhhhhc rsspsysaap
       61 stedqgyswr nvvssaadfy adetvyhtlq ntpesqvmna aagqpkagkg rkklrlfeyl
      121 heslydpama nciqwvdkpn gvfqfvsknk eklaelwger kgnrkimtyq kmaralrnyg
      181 rtgeivkirr kltyqfsavv lqrlapsyfl gketvyhhpy sqsnpdyqca ddwinynnym
      241 ynngyalqha ns
//
LOCUS       XP_009558815             249 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor Spi-C isoform X2 [Cuculus canorus].
ACCESSION   XP_009558815
VERSION     XP_009558815.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560520.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009558815.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..249
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..249
                     /product="transcription factor Spi-C isoform X2"
                     /calculated_mol_wt=28641
     Region          112..193
                     /region_name="Ets"
                     /note="Ets-domain; pfam00178"
                     /db_xref="CDD:459700"
     CDS             1..249
                     /gene="SPIC"
                     /coded_by="XM_009560520.2:119..868"
                     /db_xref="GeneID:104058932"
ORIGIN      
        1 msfpdqdvlg qafedalevl qqhsdremhy spgykncltm inhhhhcrss psysaapste
       61 dqgyswrnvv ssaadfyade tvyhtlqntp esqvmnaaag qpkagkgrkk lrlfeylhes
      121 lydpamanci qwvdkpngvf qfvsknkekl aelwgerkgn rkimtyqkma ralrnygrtg
      181 eivkirrklt yqfsavvlqr lapsyflgke tvyhhpysqs npdyqcaddw inynnymynn
      241 gyalqhans
//
LOCUS       XP_053935913             249 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor Spi-C isoform X2 [Cuculus canorus].
ACCESSION   XP_053935913
VERSION     XP_053935913.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079938.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..249
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..249
                     /product="transcription factor Spi-C isoform X2"
                     /calculated_mol_wt=28641
     Region          112..193
                     /region_name="Ets"
                     /note="Ets-domain; pfam00178"
                     /db_xref="CDD:459700"
     CDS             1..249
                     /gene="SPIC"
                     /coded_by="XM_054079938.1:228..977"
                     /db_xref="GeneID:104058932"
ORIGIN      
        1 msfpdqdvlg qafedalevl qqhsdremhy spgykncltm inhhhhcrss psysaapste
       61 dqgyswrnvv ssaadfyade tvyhtlqntp esqvmnaaag qpkagkgrkk lrlfeylhes
      121 lydpamanci qwvdkpngvf qfvsknkekl aelwgerkgn rkimtyqkma ralrnygrtg
      181 eivkirrklt yqfsavvlqr lapsyflgke tvyhhpysqs npdyqcaddw inynnymynn
      241 gyalqhans
//
LOCUS       XP_053935919             249 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor Spi-C isoform X2 [Cuculus canorus].
ACCESSION   XP_053935919
VERSION     XP_053935919.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079944.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..249
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..249
                     /product="transcription factor Spi-C isoform X2"
                     /calculated_mol_wt=28641
     Region          112..193
                     /region_name="Ets"
                     /note="Ets-domain; pfam00178"
                     /db_xref="CDD:459700"
     CDS             1..249
                     /gene="SPIC"
                     /coded_by="XM_054079944.1:623..1372"
                     /db_xref="GeneID:104058932"
ORIGIN      
        1 msfpdqdvlg qafedalevl qqhsdremhy spgykncltm inhhhhcrss psysaapste
       61 dqgyswrnvv ssaadfyade tvyhtlqntp esqvmnaaag qpkagkgrkk lrlfeylhes
      121 lydpamanci qwvdkpngvf qfvsknkekl aelwgerkgn rkimtyqkma ralrnygrtg
      181 eivkirrklt yqfsavvlqr lapsyflgke tvyhhpysqs npdyqcaddw inynnymynn
      241 gyalqhans
//
LOCUS       XP_053935924             249 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor Spi-C isoform X2 [Cuculus canorus].
ACCESSION   XP_053935924
VERSION     XP_053935924.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079949.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..249
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..249
                     /product="transcription factor Spi-C isoform X2"
                     /calculated_mol_wt=28641
     Region          112..193
                     /region_name="Ets"
                     /note="Ets-domain; pfam00178"
                     /db_xref="CDD:459700"
     CDS             1..249
                     /gene="SPIC"
                     /coded_by="XM_054079949.1:96..845"
                     /db_xref="GeneID:104058932"
ORIGIN      
        1 msfpdqdvlg qafedalevl qqhsdremhy spgykncltm inhhhhcrss psysaapste
       61 dqgyswrnvv ssaadfyade tvyhtlqntp esqvmnaaag qpkagkgrkk lrlfeylhes
      121 lydpamanci qwvdkpngvf qfvsknkekl aelwgerkgn rkimtyqkma ralrnygrtg
      181 eivkirrklt yqfsavvlqr lapsyflgke tvyhhpysqs npdyqcaddw inynnymynn
      241 gyalqhans
//
LOCUS       XP_009561600             119 aa            linear   VRT 09-MAR-2023
DEFINITION  V-type proton ATPase subunit F [Cuculus canorus].
ACCESSION   XP_009561600
VERSION     XP_009561600.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563305.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..119
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..119
                     /product="V-type proton ATPase subunit F"
                     /calculated_mol_wt=13067
     Region          1..115
                     /region_name="V_ATP_synt_F"
                     /note="vacuolar ATP synthase F subunit; TIGR01101"
                     /db_xref="CDD:130171"
     CDS             1..119
                     /gene="ATP6V1F"
                     /coded_by="XM_009563305.2:121..480"
                     /db_xref="GeneID:104061370"
ORIGIN      
        1 msgrgkllav lgdedtvtgf llggvgeldk hrrpnflvve ketslaeiee afrsflared
       61 igiilisqcl aelirhavea hsrplpavle ipskehpydp tkdsvlrrar glfapddlr
//
LOCUS       XP_009555527             367 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 52M1 [Cuculus canorus].
ACCESSION   XP_009555527
VERSION     XP_009555527.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557232.2
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555527.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 9% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..367
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..367
                     /product="olfactory receptor 52M1"
                     /calculated_mol_wt=40364
     Region          28..302
                     /region_name="7tmA_OR52I-like"
                     /note="olfactory receptor subfamily 52I and related
                     proteins, member of the class A family of
                     seven-transmembrane G protein-coupled receptors; cd15950"
                     /db_xref="CDD:320616"
     Region          29..55
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320616"
     Region          62..88
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320616"
     Site            order(84,87..88,100..105,107..108,111,156,158..162,198,
                     201..203,205..207,209..210,255,258..259,261..262,265,
                     273..274,276..278,281,284..285)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320616"
     Region          100..130
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320616"
     Region          143..164
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320616"
     Region          198..228
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320616"
     Region          235..265
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320616"
     Region          274..299
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320616"
     CDS             1..367
                     /gene="LOC104056024"
                     /coded_by="XM_009557232.2:1..1104"
                     /db_xref="GeneID:104056024"
ORIGIN      
        1 mpphlcptnt slselhltgi pglqhlhlwi sipfcllyli tlagnstllc vikadptlrl
       61 pmffflsmls vidlvmstsi tpnmlnifwf hstaisldac ltqmyfvhas saiesgvlva
      121 maldryvavc nplrylsilt rpvvaalgla tllrgvvfms pltfqirrlp lcspavvnhs
      181 ycehmavlkl scrdtdfsnt yslsvstyvg tfdsllivls yafilravlg lsssqarkka
      241 fstcsshlci mslfyipgll smyiqryhle lpphvpvlla nlyllippaf npliygirtk
      301 qirdaarrvi ywrrpmvggi epglqrtglg fvktksiprm aktsdgpwcg sqgafraada
      361 pgnvggh
//
LOCUS       XP_053935965             178 aa            linear   VRT 09-MAR-2023
DEFINITION  caveolin-1 [Cuculus canorus].
ACCESSION   XP_053935965
VERSION     XP_053935965.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054079990.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..178
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..178
                     /product="caveolin-1"
                     /calculated_mol_wt=20422
     Region          42..175
                     /region_name="Caveolin"
                     /note="pfam01146"
                     /db_xref="CDD:460081"
     CDS             1..178
                     /gene="CAV1"
                     /coded_by="XM_054079990.1:219..755"
                     /db_xref="GeneID:104064327"
ORIGIN      
        1 msgtkyvdse gflytapire qgniykpnnk mmadelsekp vhdvhtkeid lvnrdpkhln
       61 ddvvkidfed viaepegths fdgiwkasft tftvtkywfy rllsaifgip maliwgiyfa
      121 ilsflhiwav vpcirsylie iqcisrvysi cihtfcdplf eaigkmfssi ratvrkei
//
LOCUS       XP_053935976             169 aa            linear   VRT 09-MAR-2023
DEFINITION  NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2,
            mitochondrial [Cuculus canorus].
ACCESSION   XP_053935976
VERSION     XP_053935976.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080001.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..169
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..169
                     /product="NADH dehydrogenase [ubiquinone] 1 beta
                     subcomplex subunit 2, mitochondrial"
                     /calculated_mol_wt=18602
     Region          4..>97
                     /region_name="Dendrin"
                     /note="Nephrin and CD2AP-binding protein, Dendrin;
                     pfam15498"
                     /db_xref="CDD:464749"
     Region          101..168
                     /region_name="NADH_B2"
                     /note="NADH dehydrogenase 1 beta subcomplex subunit 2;
                     pfam14813"
                     /db_xref="CDD:464329"
     CDS             1..169
                     /gene="NDUFB2"
                     /coded_by="XM_054080001.1:31..540"
                     /db_xref="GeneID:104058969"
ORIGIN      
        1 mrkktrqrkr lrswwprrnp pgcarhspft pcvwaraapp qgdlggrgrl rvtlgggaga
       61 vsssnpdssa aaamlgplgr aaprlllrga agvglrragg gvhihpryrq fpeltraqvi
      121 rsellsgfmw fwilwhfwhn sdmvlghfpy pdpsawtdee lgippddae
//
LOCUS       XP_053935988            1253 aa            linear   VRT 09-MAR-2023
DEFINITION  liprin-alpha-2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053935988
VERSION     XP_053935988.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080013.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1253
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1253
                     /product="liprin-alpha-2 isoform X1"
                     /calculated_mol_wt=142654
     Region          <111..484
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          <287..>698
                     /region_name="CCDC158"
                     /note="Coiled-coil domain-containing protein 158;
                     pfam15921"
                     /db_xref="CDD:464943"
     Region          898..968
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat1"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     1; cd09562"
                     /db_xref="CDD:188961"
     Region          1015..1080
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat2"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     2; cd09565"
                     /db_xref="CDD:188964"
     Region          1100..1171
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat3"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     3; cd09568"
                     /db_xref="CDD:188967"
     CDS             1..1253
                     /gene="PPFIA2"
                     /coded_by="XM_054080013.1:348..4109"
                     /db_xref="GeneID:104061147"
ORIGIN      
        1 mmcevmptin edtpmsqrgs qssgsdsdsh feqlmvnmld erdrlldtlr etqeslslaq
       61 qrlqdviydr dslqrqlnsa lpqmtvaagt sienniqrti scpnefaalt kelnacreql
      121 lekeeeisel kaernntrll lehleclvsr herslrmtvv krqaqspsgv ssevevlkal
      181 kslfehhkal dekvrerlrv slervsalee elaaanqeiv alreqnahiq rkmaagegpa
      241 esehmegmep gqkvhekrls ngsidsndea sqvvelqell ekqnyemaqm kerlaalssr
      301 vgeveqeaet arkeliktee mnskyqrdir eamaqkedme erittlekry lsaqrestsi
      361 hdmndklene lankeailrq ledknrqlqe rlelaeqklq qtmrkaetlp eveaelaqri
      421 aaltkaeerh gnieermrhl eaqleeknqe lqrarqrekm neehnkrlsd tvdrlltesn
      481 erlqlhlker maaleeknvl iqesesfrkn leeslhdker laeeidklrs eldqmklrag
      541 slieptlsrp hldtsaelry svgslvesqs dyrstkvirr prrgrmgvrr depkvkslgd
      601 hewnrtqqig vlsshpfesd temsdidddd retlfssmdl lspsghsdaq tlammlqeql
      661 dainkeirli qeekestelr aeeienrvas vsleglnlar vhqgasitgs vtasslasss
      721 ppsghstpkl tprsparemd rmgvmtlpsd lrkhrrkiav veedgredka tikcetsppp
      781 tprairmtht lpssyhndar sslpaslepe siglgsvsss qdslhkapkk kgikssigrl
      841 fgkkekarlg qlrgymetea aaqeslglgk lgtqaekdrr lkkkhellee arrkglpfaq
      901 wdgptvvawl elwlgmpawy vaacranvks gaimsalsdt eiqreigisn plhrlklrla
      961 iqemvsltsp sapptsrtps gnvwvtheem enlaapakte seegswaqtl aygdmnhewi
     1021 gnewlpslgl pqyrsyfmec lvdarmldhl tkkdlrvhlk mvdsfhrtsl qygimclkrl
     1081 nydrkelekr remsqheikd vlvwsndrvi rwiqaiglre yannilesgv hgslialden
     1141 fdysslalll qiptqntqar qilereynnl lalgterrle esddknfrrg pswrrqfppr
     1201 evhgismmpg ssetlpagfr ltttsgqsrk matdvassrl qrldsstvrt ysc
//
LOCUS       XP_053935994            1253 aa            linear   VRT 09-MAR-2023
DEFINITION  liprin-alpha-2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053935994
VERSION     XP_053935994.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080019.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1253
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1253
                     /product="liprin-alpha-2 isoform X1"
                     /calculated_mol_wt=142654
     Region          <111..484
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          <287..>698
                     /region_name="CCDC158"
                     /note="Coiled-coil domain-containing protein 158;
                     pfam15921"
                     /db_xref="CDD:464943"
     Region          898..968
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat1"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     1; cd09562"
                     /db_xref="CDD:188961"
     Region          1015..1080
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat2"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     2; cd09565"
                     /db_xref="CDD:188964"
     Region          1100..1171
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat3"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     3; cd09568"
                     /db_xref="CDD:188967"
     CDS             1..1253
                     /gene="PPFIA2"
                     /coded_by="XM_054080019.1:349..4110"
                     /db_xref="GeneID:104061147"
ORIGIN      
        1 mmcevmptin edtpmsqrgs qssgsdsdsh feqlmvnmld erdrlldtlr etqeslslaq
       61 qrlqdviydr dslqrqlnsa lpqmtvaagt sienniqrti scpnefaalt kelnacreql
      121 lekeeeisel kaernntrll lehleclvsr herslrmtvv krqaqspsgv ssevevlkal
      181 kslfehhkal dekvrerlrv slervsalee elaaanqeiv alreqnahiq rkmaagegpa
      241 esehmegmep gqkvhekrls ngsidsndea sqvvelqell ekqnyemaqm kerlaalssr
      301 vgeveqeaet arkeliktee mnskyqrdir eamaqkedme erittlekry lsaqrestsi
      361 hdmndklene lankeailrq ledknrqlqe rlelaeqklq qtmrkaetlp eveaelaqri
      421 aaltkaeerh gnieermrhl eaqleeknqe lqrarqrekm neehnkrlsd tvdrlltesn
      481 erlqlhlker maaleeknvl iqesesfrkn leeslhdker laeeidklrs eldqmklrag
      541 slieptlsrp hldtsaelry svgslvesqs dyrstkvirr prrgrmgvrr depkvkslgd
      601 hewnrtqqig vlsshpfesd temsdidddd retlfssmdl lspsghsdaq tlammlqeql
      661 dainkeirli qeekestelr aeeienrvas vsleglnlar vhqgasitgs vtasslasss
      721 ppsghstpkl tprsparemd rmgvmtlpsd lrkhrrkiav veedgredka tikcetsppp
      781 tprairmtht lpssyhndar sslpaslepe siglgsvsss qdslhkapkk kgikssigrl
      841 fgkkekarlg qlrgymetea aaqeslglgk lgtqaekdrr lkkkhellee arrkglpfaq
      901 wdgptvvawl elwlgmpawy vaacranvks gaimsalsdt eiqreigisn plhrlklrla
      961 iqemvsltsp sapptsrtps gnvwvtheem enlaapakte seegswaqtl aygdmnhewi
     1021 gnewlpslgl pqyrsyfmec lvdarmldhl tkkdlrvhlk mvdsfhrtsl qygimclkrl
     1081 nydrkelekr remsqheikd vlvwsndrvi rwiqaiglre yannilesgv hgslialden
     1141 fdysslalll qiptqntqar qilereynnl lalgterrle esddknfrrg pswrrqfppr
     1201 evhgismmpg ssetlpagfr ltttsgqsrk matdvassrl qrldsstvrt ysc
//
LOCUS       XP_053936000            1243 aa            linear   VRT 09-MAR-2023
DEFINITION  liprin-alpha-2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053936000
VERSION     XP_053936000.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080025.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1243
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1243
                     /product="liprin-alpha-2 isoform X2"
                     /calculated_mol_wt=141662
     Region          <111..484
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          <287..>698
                     /region_name="CCDC158"
                     /note="Coiled-coil domain-containing protein 158;
                     pfam15921"
                     /db_xref="CDD:464943"
     Region          898..968
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat1"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     1; cd09562"
                     /db_xref="CDD:188961"
     Region          1015..1080
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat2"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     2; cd09565"
                     /db_xref="CDD:188964"
     Region          1100..1171
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat3"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     3; cd09568"
                     /db_xref="CDD:188967"
     CDS             1..1243
                     /gene="PPFIA2"
                     /coded_by="XM_054080025.1:351..4082"
                     /db_xref="GeneID:104061147"
ORIGIN      
        1 mmcevmptin edtpmsqrgs qssgsdsdsh feqlmvnmld erdrlldtlr etqeslslaq
       61 qrlqdviydr dslqrqlnsa lpqmtvaagt sienniqrti scpnefaalt kelnacreql
      121 lekeeeisel kaernntrll lehleclvsr herslrmtvv krqaqspsgv ssevevlkal
      181 kslfehhkal dekvrerlrv slervsalee elaaanqeiv alreqnahiq rkmaagegpa
      241 esehmegmep gqkvhekrls ngsidsndea sqvvelqell ekqnyemaqm kerlaalssr
      301 vgeveqeaet arkeliktee mnskyqrdir eamaqkedme erittlekry lsaqrestsi
      361 hdmndklene lankeailrq ledknrqlqe rlelaeqklq qtmrkaetlp eveaelaqri
      421 aaltkaeerh gnieermrhl eaqleeknqe lqrarqrekm neehnkrlsd tvdrlltesn
      481 erlqlhlker maaleeknvl iqesesfrkn leeslhdker laeeidklrs eldqmklrag
      541 slieptlsrp hldtsaelry svgslvesqs dyrstkvirr prrgrmgvrr depkvkslgd
      601 hewnrtqqig vlsshpfesd temsdidddd retlfssmdl lspsghsdaq tlammlqeql
      661 dainkeirli qeekestelr aeeienrvas vsleglnlar vhqgasitgs vtasslasss
      721 ppsghstpkl tprsparemd rmgvmtlpsd lrkhrrkiav veedgredka tikcetsppp
      781 tprairmtht lpssyhndar sslpaslepe siglgsvsss qdslhkapkk kgikssigrl
      841 fgkkekarlg qlrgymetea aaqeslglgk lgtqaekdrr lkkkhellee arrkglpfaq
      901 wdgptvvawl elwlgmpawy vaacranvks gaimsalsdt eiqreigisn plhrlklrla
      961 iqemvsltsp sapptsrtps gnvwvtheem enlaapakte seegswaqtl aygdmnhewi
     1021 gnewlpslgl pqyrsyfmec lvdarmldhl tkkdlrvhlk mvdsfhrtsl qygimclkrl
     1081 nydrkelekr remsqheikd vlvwsndrvi rwiqaiglre yannilesgv hgslialden
     1141 fdysslalll qiptqntqar qilereynnl lalgterrle esddknfrrg pswrrqfppr
     1201 evhgismmpg ssetlpagfr ltttsgqsrk matddvisff yft
//
LOCUS       XP_053936007            1232 aa            linear   VRT 09-MAR-2023
DEFINITION  liprin-alpha-2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053936007
VERSION     XP_053936007.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080032.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1232
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1232
                     /product="liprin-alpha-2 isoform X3"
                     /calculated_mol_wt=140451
     Region          42..>439
                     /region_name="YhaN"
                     /note="Uncharacterized conserved protein YhaN, contains
                     AAA domain [Function unknown]; COG4717"
                     /db_xref="CDD:443752"
     Region          <254..>523
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          877..947
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat1"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     1; cd09562"
                     /db_xref="CDD:188961"
     Region          994..1059
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat2"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     2; cd09565"
                     /db_xref="CDD:188964"
     Region          1079..1150
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat3"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     3; cd09568"
                     /db_xref="CDD:188967"
     CDS             1..1232
                     /gene="PPFIA2"
                     /coded_by="XM_054080032.1:348..4046"
                     /db_xref="GeneID:104061147"
ORIGIN      
        1 mmcevmptin edtpmsqrgs qssgsdsdsh feqlmvnmld erdrlldtlr etqeslslaq
       61 qrlqdviydr dslqrqlnsa lpqefaaltk elnacreqll ekeeeiselk aernntrlll
      121 ehleclvsrh erslrmtvvk rqaqspsgvs sevevlkalk slfehhkald ekvrerlrvs
      181 lervsaleee laaanqeiva lreqnahiqr kmaagegpae sehmegmepg qkvhekrlsn
      241 gsidsndeas qvvelqelle kqnyemaqmk erlaalssrv geveqeaeta rkelikteem
      301 nskyqrdire amaqkedmee rittlekryl saqrestsih dmndklenel ankeailrql
      361 edknrqlqer lelaeqklqq tmrkaetlpe veaelaqria altkaeerhg nieermrhle
      421 aqleeknqel qrarqrekmn eehnkrlsdt vdrlltesne rlqlhlkerm aaleeknvli
      481 qesesfrknl eeslhdkerl aeeidklrse ldqmklrags lieptlsrph ldtsaelrys
      541 vgslvesqsd yrstkvirrp rrgrmgvrrd epkvkslgdh ewnrtqqigv lsshpfesdt
      601 emsdiddddr etlfssmdll spsghsdaqt lammlqeqld ainkeirliq eekestelra
      661 eeienrvasv sleglnlarv hqgasitgsv tasslasssp psghstpklt prsparemdr
      721 mgvmtlpsdl rkhrrkiavv eedgredkat ikcetspppt prairmthtl pssyhndars
      781 slpaslepes iglgsvsssq dslhkapkkk gikssigrlf gkkekarlgq lrgymeteaa
      841 aqeslglgkl gtqaekdrrl kkkhelleea rrkglpfaqw dgptvvawle lwlgmpawyv
      901 aacranvksg aimsalsdte iqreigisnp lhrlklrlai qemvsltsps apptsrtpsg
      961 nvwvtheeme nlaapaktes eegswaqtla ygdmnhewig newlpslglp qyrsyfmecl
     1021 vdarmldhlt kkdlrvhlkm vdsfhrtslq ygimclkrln ydrkelekrr emsqheikdv
     1081 lvwsndrvir wiqaiglrey annilesgvh gslialdenf dysslalllq iptqntqarq
     1141 ilereynnll algterrlee sddknfrrgp swrrqfppre vhgismmpgs setlpagfrl
     1201 tttsgqsrkm atdvassrlq rldsstvrty sc
//
LOCUS       XP_053936015            1232 aa            linear   VRT 09-MAR-2023
DEFINITION  liprin-alpha-2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053936015
VERSION     XP_053936015.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080040.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1232
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1232
                     /product="liprin-alpha-2 isoform X4"
                     /calculated_mol_wt=140390
     Region          43..>454
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          <275..>544
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          898..968
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat1"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     1; cd09562"
                     /db_xref="CDD:188961"
     Region          994..1059
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat2"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     2; cd09565"
                     /db_xref="CDD:188964"
     Region          1079..1150
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat3"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     3; cd09568"
                     /db_xref="CDD:188967"
     CDS             1..1232
                     /gene="PPFIA2"
                     /coded_by="XM_054080040.1:349..4047"
                     /db_xref="GeneID:104061147"
ORIGIN      
        1 mmcevmptin edtpmsqrgs qssgsdsdsh feqlmvnmld erdrlldtlr etqeslslaq
       61 qrlqdviydr dslqrqlnsa lpqmtvaagt sienniqrti scpnefaalt kelnacreql
      121 lekeeeisel kaernntrll lehleclvsr herslrmtvv krqaqspsgv ssevevlkal
      181 kslfehhkal dekvrerlrv slervsalee elaaanqeiv alreqnahiq rkmaagegpa
      241 esehmegmep gqkvhekrls ngsidsndea sqvvelqell ekqnyemaqm kerlaalssr
      301 vgeveqeaet arkeliktee mnskyqrdir eamaqkedme erittlekry lsaqrestsi
      361 hdmndklene lankeailrq ledknrqlqe rlelaeqklq qtmrkaetlp eveaelaqri
      421 aaltkaeerh gnieermrhl eaqleeknqe lqrarqrekm neehnkrlsd tvdrlltesn
      481 erlqlhlker maaleeknvl iqesesfrkn leeslhdker laeeidklrs eldqmklrag
      541 slieptlsrp hldtsaelry svgslvesqs dyrstkvirr prrgrmgvrr depkvkslgd
      601 hewnrtqqig vlsshpfesd temsdidddd retlfssmdl lspsghsdaq tlammlqeql
      661 dainkeirli qeekestelr aeeienrvas vsleglnlar vhqgasitgs vtasslasss
      721 ppsghstpkl tprsparemd rmgvmtlpsd lrkhrrkiav veedgredka tikcetsppp
      781 tprairmtht lpssyhndar sslpaslepe siglgsvsss qdslhkapkk kgikssigrl
      841 fgkkekarlg qlrgymetea aaqeslglgk lgtqaekdrr lkkkhellee arrkglpfaq
      901 wdgptvvawl elwlgmpawy vaacranvks gaimsalsdt eiqreigisn plhrlklrla
      961 iqemvsltsp sapptsrtes eegswaqtla ygdmnhewig newlpslglp qyrsyfmecl
     1021 vdarmldhlt kkdlrvhlkm vdsfhrtslq ygimclkrln ydrkelekrr emsqheikdv
     1081 lvwsndrvir wiqaiglrey annilesgvh gslialdenf dysslalllq iptqntqarq
     1141 ilereynnll algterrlee sddknfrrgp swrrqfppre vhgismmpgs setlpagfrl
     1201 tttsgqsrkm atdvassrlq rldsstvrty sc
//
LOCUS       XP_053936022            1228 aa            linear   VRT 09-MAR-2023
DEFINITION  liprin-alpha-2 isoform X5 [Cuculus canorus].
ACCESSION   XP_053936022
VERSION     XP_053936022.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080047.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1228
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1228
                     /product="liprin-alpha-2 isoform X5"
                     /calculated_mol_wt=139803
     Region          43..>429
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          <250..>519
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          873..943
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat1"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     1; cd09562"
                     /db_xref="CDD:188961"
     Region          990..1055
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat2"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     2; cd09565"
                     /db_xref="CDD:188964"
     Region          1075..1146
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat3"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     3; cd09568"
                     /db_xref="CDD:188967"
     CDS             1..1228
                     /gene="PPFIA2"
                     /coded_by="XM_054080047.1:349..4035"
                     /db_xref="GeneID:104061147"
ORIGIN      
        1 mmcevmptin edtpmsqrgs qssgsdsdsh feqlmvnmld erdrlldtlr etqeslslaq
       61 qrlqdviydr dslqrqlnsa lpqmtvaagt sienniqrti scpnefaalt kelnacreql
      121 lekeeeisel kaernntrll lehleclvsr herslrmtvv krqaqspsgv ssevevlkal
      181 kslfehhkal dekivalreq nahiqrkmaa gegpaesehm egmepgqkvh ekrlsngsid
      241 sndeasqvve lqellekqny emaqmkerla alssrvgeve qeaetarkel ikteemnsky
      301 qrdireamaq kedmeeritt lekrylsaqr estsihdmnd klenelanke ailrqledkn
      361 rqlqerlela eqklqqtmrk aetlpeveae laqriaaltk aeerhgniee rmrhleaqle
      421 eknqelqrar qrekmneehn krlsdtvdrl ltesnerlql hlkermaale eknvliqese
      481 sfrknleesl hdkerlaeei dklrseldqm klragsliep tlsrphldts aelrysvgsl
      541 vesqsdyrst kvirrprrgr mgvrrdepkv kslgdhewnr tqqigvlssh pfesdtemsd
      601 iddddretlf ssmdllspsg hsdaqtlamm lqeqldaink eirliqeeke stelraeeie
      661 nrvasvsleg lnlarvhqga sitgsvtass lasssppsgh stpkltprsp aremdrmgvm
      721 tlpsdlrkhr rkiavveedg redkatikce tsppptprai rmthtlpssy hndarsslpa
      781 slepesiglg svsssqdslh kapkkkgiks sigrlfgkke karlgqlrgy meteaaaqes
      841 lglgklgtqa ekdrrlkkkh elleearrkg lpfaqwdgpt vvawlelwlg mpawyvaacr
      901 anvksgaims alsdteiqre igisnplhrl klrlaiqemv sltspsappt srtpsgnvwv
      961 theemenlaa pakteseegs waqtlaygdm nhewignewl pslglpqyrs yfmeclvdar
     1021 mldhltkkdl rvhlkmvdsf hrtslqygim clkrlnydrk elekrremsq heikdvlvws
     1081 ndrvirwiqa iglreyanni lesgvhgsli aldenfdyss lalllqiptq ntqarqiler
     1141 eynnllalgt errleesddk nfrrgpswrr qfpprevhgi smmpgssetl pagfrlttts
     1201 gqsrkmatdv assrlqrlds stvrtysc
//
LOCUS       XP_053936028            1197 aa            linear   VRT 09-MAR-2023
DEFINITION  liprin-alpha-2 isoform X6 [Cuculus canorus].
ACCESSION   XP_053936028
VERSION     XP_053936028.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080053.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1197
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1197
                     /product="liprin-alpha-2 isoform X6"
                     /calculated_mol_wt=136165
     Region          <55..428
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          <231..>642
                     /region_name="CCDC158"
                     /note="Coiled-coil domain-containing protein 158;
                     pfam15921"
                     /db_xref="CDD:464943"
     Region          842..912
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat1"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     1; cd09562"
                     /db_xref="CDD:188961"
     Region          959..1024
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat2"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     2; cd09565"
                     /db_xref="CDD:188964"
     Region          1044..1115
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat3"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     3; cd09568"
                     /db_xref="CDD:188967"
     CDS             1..1197
                     /gene="PPFIA2"
                     /coded_by="XM_054080053.1:318..3911"
                     /db_xref="GeneID:104061147"
ORIGIN      
        1 mifsdmntvs aspkvhppng trfytfqmtv aagtsienni qrtiscpnef aaltkelnac
       61 reqllekeee iselkaernn trlllehlec lvsrherslr mtvvkrqaqs psgvssevev
      121 lkalkslfeh hkaldekvre rlrvslervs aleeelaaan qeivalreqn ahiqrkmaag
      181 egpaesehme gmepgqkvhe krlsngsids ndeasqvvel qellekqnye maqmkerlaa
      241 lssrvgeveq eaetarkeli kteemnskyq rdireamaqk edmeerittl ekrylsaqre
      301 stsihdmndk lenelankea ilrqledknr qlqerlelae qklqqtmrka etlpeveael
      361 aqriaaltka eerhgnieer mrhleaqlee knqelqrarq rekmneehnk rlsdtvdrll
      421 tesnerlqlh lkermaalee knvliqeses frknleeslh dkerlaeeid klrseldqmk
      481 lragsliept lsrphldtsa elrysvgslv esqsdyrstk virrprrgrm gvrrdepkvk
      541 slgdhewnrt qqigvlsshp fesdtemsdi ddddretlfs smdllspsgh sdaqtlamml
      601 qeqldainke irliqeekes telraeeien rvasvslegl nlarvhqgas itgsvtassl
      661 asssppsghs tpkltprspa remdrmgvmt lpsdlrkhrr kiavveedgr edkatikcet
      721 sppptprair mthtlpssyh ndarsslpas lepesiglgs vsssqdslhk apkkkgikss
      781 igrlfgkkek arlgqlrgym eteaaaqesl glgklgtqae kdrrlkkkhe lleearrkgl
      841 pfaqwdgptv vawlelwlgm pawyvaacra nvksgaimsa lsdteiqrei gisnplhrlk
      901 lrlaiqemvs ltspsappts rtpsgnvwvt heemenlaap akteseegsw aqtlaygdmn
      961 hewignewlp slglpqyrsy fmeclvdarm ldhltkkdlr vhlkmvdsfh rtslqygimc
     1021 lkrlnydrke lekrremsqh eikdvlvwsn drvirwiqai glreyannil esgvhgslia
     1081 ldenfdyssl alllqiptqn tqarqilere ynnllalgte rrleesddkn frrgpswrrq
     1141 fpprevhgis mmpgssetlp agfrltttsg qsrkmatdva ssrlqrldss tvrtysc
//
LOCUS       XP_053936036            1176 aa            linear   VRT 09-MAR-2023
DEFINITION  liprin-alpha-2 isoform X7 [Cuculus canorus].
ACCESSION   XP_053936036
VERSION     XP_053936036.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080061.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1176
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1176
                     /product="liprin-alpha-2 isoform X7"
                     /calculated_mol_wt=133963
     Region          <34..407
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          <210..>621
                     /region_name="CCDC158"
                     /note="Coiled-coil domain-containing protein 158;
                     pfam15921"
                     /db_xref="CDD:464943"
     Region          821..891
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat1"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     1; cd09562"
                     /db_xref="CDD:188961"
     Region          938..1003
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat2"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     2; cd09565"
                     /db_xref="CDD:188964"
     Region          1023..1094
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat3"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     3; cd09568"
                     /db_xref="CDD:188967"
     CDS             1..1176
                     /gene="PPFIA2"
                     /coded_by="XM_054080061.1:319..3849"
                     /db_xref="GeneID:104061147"
ORIGIN      
        1 mifsdmntvs aspkvhppng trfytfqefa altkelnacr eqllekeeei selkaernnt
       61 rlllehlecl vsrherslrm tvvkrqaqsp sgvssevevl kalkslfehh kaldekvrer
      121 lrvslervsa leeelaaanq eivalreqna hiqrkmaage gpaesehmeg mepgqkvhek
      181 rlsngsidsn deasqvvelq ellekqnyem aqmkerlaal ssrvgeveqe aetarkelik
      241 teemnskyqr direamaqke dmeerittle krylsaqres tsihdmndkl enelankeai
      301 lrqledknrq lqerlelaeq klqqtmrkae tlpeveaela qriaaltkae erhgnieerm
      361 rhleaqleek nqelqrarqr ekmneehnkr lsdtvdrllt esnerlqlhl kermaaleek
      421 nvliqesesf rknleeslhd kerlaeeidk lrseldqmkl ragslieptl srphldtsae
      481 lrysvgslve sqsdyrstkv irrprrgrmg vrrdepkvks lgdhewnrtq qigvlsshpf
      541 esdtemsdid dddretlfss mdllspsghs daqtlammlq eqldainkei rliqeekest
      601 elraeeienr vasvslegln larvhqgasi tgsvtassla sssppsghst pkltprspar
      661 emdrmgvmtl psdlrkhrrk iavveedgre dkatikcets ppptprairm thtlpssyhn
      721 darsslpasl epesiglgsv sssqdslhka pkkkgikssi grlfgkkeka rlgqlrgyme
      781 teaaaqeslg lgklgtqaek drrlkkkhel leearrkglp faqwdgptvv awlelwlgmp
      841 awyvaacran vksgaimsal sdteiqreig isnplhrlkl rlaiqemvsl tspsapptsr
      901 tpsgnvwvth eemenlaapa kteseegswa qtlaygdmnh ewignewlps lglpqyrsyf
      961 meclvdarml dhltkkdlrv hlkmvdsfhr tslqygimcl krlnydrkel ekrremsqhe
     1021 ikdvlvwsnd rvirwiqaig lreyannile sgvhgslial denfdyssla lllqiptqnt
     1081 qarqilerey nnllalgter rleesddknf rrgpswrrqf pprevhgism mpgssetlpa
     1141 gfrltttsgq srkmatdvas srlqrldsst vrtysc
//
LOCUS       XP_053936039            1151 aa            linear   VRT 09-MAR-2023
DEFINITION  liprin-alpha-2 isoform X8 [Cuculus canorus].
ACCESSION   XP_053936039
VERSION     XP_053936039.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080064.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1151
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1151
                     /product="liprin-alpha-2 isoform X8"
                     /calculated_mol_wt=131113
     Region          <28..>284
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     Region          <173..>442
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          323..>589
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     Region          796..866
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat1"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     1; cd09562"
                     /db_xref="CDD:188961"
     Region          913..978
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat2"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     2; cd09565"
                     /db_xref="CDD:188964"
     Region          998..1069
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat3"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     3; cd09568"
                     /db_xref="CDD:188967"
     CDS             1..1151
                     /gene="PPFIA2"
                     /coded_by="XM_054080064.1:319..3774"
                     /db_xref="GeneID:104061147"
ORIGIN      
        1 mifsdmntvs aspkvhppng trfytfqefa altkelnacr eqllekeeei selkaernnt
       61 rlllehlecl vsrherslrm tvvkrqaqsp sgvssevevl kalkslfehh kaldekival
      121 reqnahiqrk maagegpaes ehmegmepgq kvhekrlsng sidsndeasq vvelqellek
      181 qnyemaqmke rlaalssrvg eveqeaetar kelikteemn skyqrdirea maqkedmeer
      241 ittlekryls aqrestsihd mndklenela nkeailrqle dknrqlqerl elaeqklqqt
      301 mrkaetlpev eaelaqriaa ltkaeerhgn ieermrhlea qleeknqelq rarqrekmne
      361 ehnkrlsdtv drlltesner lqlhlkerma aleeknvliq esesfrknle eslhdkerla
      421 eeidklrsel dqmklragsl ieptlsrphl dtsaelrysv gslvesqsdy rstkvirrpr
      481 rgrmgvrrde pkvkslgdhe wnrtqqigvl sshpfesdte msdiddddre tlfssmdlls
      541 psghsdaqtl ammlqeqlda inkeirliqe ekestelrae eienrvasvs leglnlarvh
      601 qgasitgsvt asslassspp sghstpkltp rsparemdrm gvmtlpsdlr khrrkiavve
      661 edgredkati kcetsppptp rairmthtlp ssyhndarss lpaslepesi glgsvsssqd
      721 slhkapkkkg ikssigrlfg kkekarlgql rgymeteaaa qeslglgklg tqaekdrrlk
      781 kkhelleear rkglpfaqwd gptvvawlel wlgmpawyva acranvksga imsalsdtei
      841 qreigisnpl hrlklrlaiq emvsltspsa pptsrtpsgn vwvtheemen laapaktese
      901 egswaqtlay gdmnhewign ewlpslglpq yrsyfmeclv darmldhltk kdlrvhlkmv
      961 dsfhrtslqy gimclkrlny drkelekrre msqheikdvl vwsndrvirw iqaiglreya
     1021 nnilesgvhg slialdenfd ysslalllqi ptqntqarqi lereynnlla lgterrlees
     1081 ddknfrrgps wrrqfpprev hgismmpgss etlpagfrlt ttsgqsrkma tdvassrlqr
     1141 ldsstvrtys c
//
LOCUS       XP_053936041            1282 aa            linear   VRT 09-MAR-2023
DEFINITION  liprin-alpha-2 isoform X9 [Cuculus canorus].
ACCESSION   XP_053936041
VERSION     XP_053936041.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080066.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1282
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1282
                     /product="liprin-alpha-2 isoform X9"
                     /calculated_mol_wt=146002
     Region          43..>423
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          <256..565
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     Region          927..997
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat1"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     1; cd09562"
                     /db_xref="CDD:188961"
     Region          1044..1109
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat2"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     2; cd09565"
                     /db_xref="CDD:188964"
     Region          1129..1200
                     /region_name="SAM_liprin-alpha1,2,3,4_repeat3"
                     /note="SAM domain of liprin-alpha1,2,3,4 proteins repeat
                     3; cd09568"
                     /db_xref="CDD:188967"
     CDS             1..1282
                     /gene="PPFIA2"
                     /coded_by="XM_054080066.1:352..4200"
                     /db_xref="GeneID:104061147"
ORIGIN      
        1 mmcevmptin edtpmsqrgs qssgsdsdsh feqlmvnmld erdrlldtlr etqeslslaq
       61 qrlqdviydr dslqrqlnsa lpqmtvaagt sienniqrti scpnefaalt kelnacreql
      121 lekeeeisel kaernntrll lehleclvsr herslrmtvv krqaqspsgv ssevevlkal
      181 kslfehhkal dekvrerlrv slervsalee elaaanqeiv alreqnahiq rkmaagegpa
      241 esehmegmep gqkvhekrls ngsidsndea sqvvelqell ekqnyemaqm kerlaalssr
      301 vgeveqeaet arkeliktee mnskyqrdir eamaqkedme erittlekry lsaqrestsi
      361 hdmndklene lankeailrq ledknrqlqe rlelaeqklq qtmrkaetlp eveaelaqri
      421 aaltksdpts stssddyqyv meaklqemis irrkaeerhg nieermrhle aqleeknqel
      481 qrarqrekmn eehnkrlsdt vdrlltesne rlqlhlkerm aaleeknvli qesesfrknl
      541 eeslhdkerl aeeidklrse ldqmklrags lieptlsrph ldtsaelrys vgslvesqsd
      601 yrstkvirrp rrgrmgvrrd epkvkslgdh ewnrtqqigv lsshpfesdt emsdiddddr
      661 etlfssmdll spsghsdaqt lammlqeqld ainkeirliq eekestelra eeienrvasv
      721 sleglnlarv hqgasitgsv tasslasssp psghstpklt prsparemdr mgvmtlpsdl
      781 rkhrrkiavv eedgredkat ikcetspppt prairmthtl pssyhndars slpaslepes
      841 iglgsvsssq dslhkapkkk gikssigrlf gkkekarlgq lrgymeteaa aqeslglgkl
      901 gtqaekdrrl kkkhelleea rrkglpfaqw dgptvvawle lwlgmpawyv aacranvksg
      961 aimsalsdte iqreigisnp lhrlklrlai qemvsltsps apptsrtpsg nvwvtheeme
     1021 nlaapaktes eegswaqtla ygdmnhewig newlpslglp qyrsyfmecl vdarmldhlt
     1081 kkdlrvhlkm vdsfhrtslq ygimclkrln ydrkelekrr emsqheikdv lvwsndrvir
     1141 wiqaiglrey annilesgvh gslialdenf dysslalllq iptqntqarq ilereynnll
     1201 algterrlee sddknfrrgp swrrqfppre vhgismmpgs setlpagfrl tttsgqsrkm
     1261 atdvassrlq rldsstvrty sc
//
LOCUS       XP_053936056             664 aa            linear   VRT 09-MAR-2023
DEFINITION  acyl-CoA synthetase short-chain family member 3, mitochondrial
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053936056
VERSION     XP_053936056.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080081.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..664
                     /product="acyl-CoA synthetase short-chain family member 3,
                     mitochondrial isoform X1"
                     /calculated_mol_wt=73329
     Region          40..654
                     /region_name="PrpE"
                     /note="Propionyl-CoA synthetase (PrpE); cd05967"
                     /db_xref="CDD:341271"
     Site            order(271,274..279,281..282)
                     /site_type="other"
                     /note="acyl-activating enzyme (AAE) consensus motif"
                     /db_xref="CDD:341271"
     Site            order(274,399..400,421..426,514,526,529,540,624)
                     /site_type="other"
                     /note="putative AMP binding site [chemical binding]"
                     /db_xref="CDD:341271"
     Site            order(274,315..316,368,370..371,374,399..400,421..426,514,
                     526,529,537..540,605)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:341271"
     Site            order(315,370..371,374,399,537..539,599,605)
                     /site_type="other"
                     /note="putative CoA binding site [chemical binding]"
                     /db_xref="CDD:341271"
     CDS             1..664
                     /gene="ACSS3"
                     /coded_by="XM_054080081.1:90..2084"
                     /db_xref="GeneID:104061158"
ORIGIN      
        1 mwllarpwal prlggargga wrrlrtgpcp paaprplgry eevfrssvse peklwgaase
       61 qirwdkpwvq alekgsggwf vggelnicyn avdrhvengr gdqiaiiyds pvtntkekit
      121 ykelleqvsk ladvmvrhgv kkgdrvviym pmipqtiycm lacarigaih slifggfask
      181 elsvridhak prlivtasfg vepkrkveyi sllegalarv qnkpdkvliy krpnlgdvpl
      241 tpgrdldwee elakahlhkc vsvpsdhply ilytsgttgl pkgvvrptgg yavmlnwtms
      301 avyglkpgev wwaasdlgwv vghsyicygp llhgnttvly egkpvgtpda gayfrvlaeh
      361 evaafftspt airairqqdp eaalgkqytl krfrtlfvag ehcdvdtlew skkvfkvpvl
      421 dhwwqtesgs aitasciglg nsttpppgqa gkpvpgynvm ildenkepvk vktlgnivvk
      481 lplppgafss lwenqetfqk lyfqkfpgyy dtmdagymde dgylyvlsra ddvinvaghr
      541 isagaieeci lfhhavadca vvgredplkg hvpfalcvlr egvktekeki leeivdrvrn
      601 nigpvaafqk gvfvkqlpkt rsgkiprsal salvsgkpyk itptiedasv fkhieevlkk
      661 nkig
//
LOCUS       XP_053936062             601 aa            linear   VRT 09-MAR-2023
DEFINITION  acyl-CoA synthetase short-chain family member 3, mitochondrial
            isoform X2 [Cuculus canorus].
ACCESSION   XP_053936062
VERSION     XP_053936062.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080087.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..601
                     /product="acyl-CoA synthetase short-chain family member 3,
                     mitochondrial isoform X2"
                     /calculated_mol_wt=66404
     Region          40..591
                     /region_name="Adenylate forming domain, Class I
                     superfamily"
                     /note="This family includes acyl- and aryl-CoA ligases, as
                     well as the adenylation domain of nonribosomal peptide
                     synthetases and firefly luciferases. The adenylate-forming
                     enzymes catalyze an ATP-dependent two-step reaction to
                     first activate a carboxylate...; cl17068"
                     /db_xref="CDD:473059"
     Site            order(208,211..216,218..219)
                     /site_type="other"
                     /note="acyl-activating enzyme (AAE) consensus motif"
                     /db_xref="CDD:341228"
     Site            order(211,336..337,358..363,451,463,466,477,561)
                     /site_type="other"
                     /note="AMP binding site [chemical binding]"
                     /db_xref="CDD:341228"
     Site            order(211,252..253,305,307..308,311,336..337,358..363,451,
                     463,466,474..477,542)
                     /site_type="active"
                     /db_xref="CDD:341228"
     Site            order(252,307..308,311,336,474..476,536,542)
                     /site_type="other"
                     /note="CoA binding site [chemical binding]"
                     /db_xref="CDD:341228"
     CDS             1..601
                     /gene="ACSS3"
                     /coded_by="XM_054080087.1:90..1895"
                     /db_xref="GeneID:104061158"
ORIGIN      
        1 mwllarpwal prlggargga wrrlrtgpcp paaprplgry eevfrssvse peklwgaase
       61 qirwdkpwvq alekgsggwf vggelnicyn avdrhvengr gdqiaiiyds pvtntkekit
      121 ykelleqprl ivtasfgvep krkveyisll egalarvqnk pdkvliykrp nlgdvpltpg
      181 rdldweeela kahlhkcvsv psdhplyily tsgttglpkg vvrptggyav mlnwtmsavy
      241 glkpgevwwa asdlgwvvgh syicygpllh gnttvlyegk pvgtpdagay frvlaeheva
      301 afftsptair airqqdpeaa lgkqytlkrf rtlfvagehc dvdtlewskk vfkvpvldhw
      361 wqtesgsait asciglgnst tpppgqagkp vpgynvmild enkepvkvkt lgnivvklpl
      421 ppgafsslwe nqetfqklyf qkfpgyydtm dagymdedgy lyvlsraddv invaghrisa
      481 gaieecilfh havadcavvg redplkghvp falcvlregv ktekekilee ivdrvrnnig
      541 pvaafqkgvf vkqlpktrsg kiprsalsal vsgkpykitp tiedasvfkh ieevlkknki
      601 g
//
LOCUS       XP_053936069             552 aa            linear   VRT 09-MAR-2023
DEFINITION  acyl-CoA synthetase short-chain family member 3, mitochondrial
            isoform X3 [Cuculus canorus].
ACCESSION   XP_053936069
VERSION     XP_053936069.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080094.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..552
                     /product="acyl-CoA synthetase short-chain family member 3,
                     mitochondrial isoform X3"
                     /calculated_mol_wt=61121
     Region          40..548
                     /region_name="Adenylate forming domain, Class I
                     superfamily"
                     /note="This family includes acyl- and aryl-CoA ligases, as
                     well as the adenylation domain of nonribosomal peptide
                     synthetases and firefly luciferases. The adenylate-forming
                     enzymes catalyze an ATP-dependent two-step reaction to
                     first activate a carboxylate...; cl17068"
                     /db_xref="CDD:473059"
     Site            order(271,274..279,281..282)
                     /site_type="other"
                     /note="acyl-activating enzyme (AAE) consensus motif"
                     /db_xref="CDD:341228"
     Site            order(274,315..316,368,370..371,374,399..400,421..426,514,
                     526,529,537..540)
                     /site_type="active"
                     /db_xref="CDD:341228"
     Site            order(274,399..400,421..426,514,526,529,540)
                     /site_type="other"
                     /note="AMP binding site [chemical binding]"
                     /db_xref="CDD:341228"
     Site            order(315,370..371,374,399,537..539)
                     /site_type="other"
                     /note="CoA binding site [chemical binding]"
                     /db_xref="CDD:341228"
     CDS             1..552
                     /gene="ACSS3"
                     /coded_by="XM_054080094.1:90..1748"
                     /db_xref="GeneID:104061158"
ORIGIN      
        1 mwllarpwal prlggargga wrrlrtgpcp paaprplgry eevfrssvse peklwgaase
       61 qirwdkpwvq alekgsggwf vggelnicyn avdrhvengr gdqiaiiyds pvtntkekit
      121 ykelleqvsk ladvmvrhgv kkgdrvviym pmipqtiycm lacarigaih slifggfask
      181 elsvridhak prlivtasfg vepkrkveyi sllegalarv qnkpdkvliy krpnlgdvpl
      241 tpgrdldwee elakahlhkc vsvpsdhply ilytsgttgl pkgvvrptgg yavmlnwtms
      301 avyglkpgev wwaasdlgwv vghsyicygp llhgnttvly egkpvgtpda gayfrvlaeh
      361 evaafftspt airairqqdp eaalgkqytl krfrtlfvag ehcdvdtlew skkvfkvpvl
      421 dhwwqtesgs aitasciglg nsttpppgqa gkpvpgynvm ildenkepvk vktlgnivvk
      481 lplppgafss lwenqetfqk lyfqkfpgyy dtmdagymde dgylyvlsra ddvinvaghr
      541 isagaieehr tf
//
LOCUS       XP_053936080             530 aa            linear   VRT 09-MAR-2023
DEFINITION  acyl-CoA synthetase short-chain family member 3, mitochondrial
            isoform X4 [Cuculus canorus].
ACCESSION   XP_053936080
VERSION     XP_053936080.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080105.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..530
                     /product="acyl-CoA synthetase short-chain family member 3,
                     mitochondrial isoform X4"
                     /calculated_mol_wt=58302
     Region          1..520
                     /region_name="Adenylate forming domain, Class I
                     superfamily"
                     /note="This family includes acyl- and aryl-CoA ligases, as
                     well as the adenylation domain of nonribosomal peptide
                     synthetases and firefly luciferases. The adenylate-forming
                     enzymes catalyze an ATP-dependent two-step reaction to
                     first activate a carboxylate...; cl17068"
                     /db_xref="CDD:473059"
     Site            order(137,140..145,147..148)
                     /site_type="other"
                     /note="acyl-activating enzyme (AAE) consensus motif"
                     /db_xref="CDD:341228"
     Site            order(140,265..266,287..292,380,392,395,406,490)
                     /site_type="other"
                     /note="AMP binding site [chemical binding]"
                     /db_xref="CDD:341228"
     Site            order(140,181..182,234,236..237,240,265..266,287..292,380,
                     392,395,403..406,471)
                     /site_type="active"
                     /db_xref="CDD:341228"
     Site            order(181,236..237,240,265,403..405,465,471)
                     /site_type="other"
                     /note="CoA binding site [chemical binding]"
                     /db_xref="CDD:341228"
     CDS             1..530
                     /gene="ACSS3"
                     /coded_by="XM_054080105.1:463..2055"
                     /db_xref="GeneID:104061158"
ORIGIN      
        1 mvrhgvkkgd rvviympmip qtiycmlaca rigaihslif ggfaskelsv ridhakprli
       61 vtasfgvepk rkveyislle galarvqnkp dkvliykrpn lgdvpltpgr dldweeelak
      121 ahlhkcvsvp sdhplyilyt sgttglpkgv vrptggyavm lnwtmsavyg lkpgevwwaa
      181 sdlgwvvghs yicygpllhg nttvlyegkp vgtpdagayf rvlaehevaa fftsptaira
      241 irqqdpeaal gkqytlkrfr tlfvagehcd vdtlewskkv fkvpvldhww qtesgsaita
      301 sciglgnstt pppgqagkpv pgynvmilde nkepvkvktl gnivvklplp pgafsslwen
      361 qetfqklyfq kfpgyydtmd agymdedgyl yvlsraddvi nvaghrisag aieecilfhh
      421 avadcavvgr edplkghvpf alcvlregvk tekekileei vdrvrnnigp vaafqkgvfv
      481 kqlpktrsgk iprsalsalv sgkpykitpt iedasvfkhi eevlkknkig
//
LOCUS       XP_053936089             530 aa            linear   VRT 09-MAR-2023
DEFINITION  acyl-CoA synthetase short-chain family member 3, mitochondrial
            isoform X4 [Cuculus canorus].
ACCESSION   XP_053936089
VERSION     XP_053936089.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080114.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..530
                     /product="acyl-CoA synthetase short-chain family member 3,
                     mitochondrial isoform X4"
                     /calculated_mol_wt=58302
     Region          1..520
                     /region_name="Adenylate forming domain, Class I
                     superfamily"
                     /note="This family includes acyl- and aryl-CoA ligases, as
                     well as the adenylation domain of nonribosomal peptide
                     synthetases and firefly luciferases. The adenylate-forming
                     enzymes catalyze an ATP-dependent two-step reaction to
                     first activate a carboxylate...; cl17068"
                     /db_xref="CDD:473059"
     Site            order(137,140..145,147..148)
                     /site_type="other"
                     /note="acyl-activating enzyme (AAE) consensus motif"
                     /db_xref="CDD:341228"
     Site            order(140,265..266,287..292,380,392,395,406,490)
                     /site_type="other"
                     /note="AMP binding site [chemical binding]"
                     /db_xref="CDD:341228"
     Site            order(140,181..182,234,236..237,240,265..266,287..292,380,
                     392,395,403..406,471)
                     /site_type="active"
                     /db_xref="CDD:341228"
     Site            order(181,236..237,240,265,403..405,465,471)
                     /site_type="other"
                     /note="CoA binding site [chemical binding]"
                     /db_xref="CDD:341228"
     CDS             1..530
                     /gene="ACSS3"
                     /coded_by="XM_054080114.1:658..2250"
                     /db_xref="GeneID:104061158"
ORIGIN      
        1 mvrhgvkkgd rvviympmip qtiycmlaca rigaihslif ggfaskelsv ridhakprli
       61 vtasfgvepk rkveyislle galarvqnkp dkvliykrpn lgdvpltpgr dldweeelak
      121 ahlhkcvsvp sdhplyilyt sgttglpkgv vrptggyavm lnwtmsavyg lkpgevwwaa
      181 sdlgwvvghs yicygpllhg nttvlyegkp vgtpdagayf rvlaehevaa fftsptaira
      241 irqqdpeaal gkqytlkrfr tlfvagehcd vdtlewskkv fkvpvldhww qtesgsaita
      301 sciglgnstt pppgqagkpv pgynvmilde nkepvkvktl gnivvklplp pgafsslwen
      361 qetfqklyfq kfpgyydtmd agymdedgyl yvlsraddvi nvaghrisag aieecilfhh
      421 avadcavvgr edplkghvpf alcvlregvk tekekileei vdrvrnnigp vaafqkgvfv
      481 kqlpktrsgk iprsalsalv sgkpykitpt iedasvfkhi eevlkknkig
//
LOCUS       XP_053936100             530 aa            linear   VRT 09-MAR-2023
DEFINITION  acyl-CoA synthetase short-chain family member 3, mitochondrial
            isoform X4 [Cuculus canorus].
ACCESSION   XP_053936100
VERSION     XP_053936100.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080125.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..530
                     /product="acyl-CoA synthetase short-chain family member 3,
                     mitochondrial isoform X4"
                     /calculated_mol_wt=58302
     Region          1..520
                     /region_name="Adenylate forming domain, Class I
                     superfamily"
                     /note="This family includes acyl- and aryl-CoA ligases, as
                     well as the adenylation domain of nonribosomal peptide
                     synthetases and firefly luciferases. The adenylate-forming
                     enzymes catalyze an ATP-dependent two-step reaction to
                     first activate a carboxylate...; cl17068"
                     /db_xref="CDD:473059"
     Site            order(137,140..145,147..148)
                     /site_type="other"
                     /note="acyl-activating enzyme (AAE) consensus motif"
                     /db_xref="CDD:341228"
     Site            order(140,265..266,287..292,380,392,395,406,490)
                     /site_type="other"
                     /note="AMP binding site [chemical binding]"
                     /db_xref="CDD:341228"
     Site            order(140,181..182,234,236..237,240,265..266,287..292,380,
                     392,395,403..406,471)
                     /site_type="active"
                     /db_xref="CDD:341228"
     Site            order(181,236..237,240,265,403..405,465,471)
                     /site_type="other"
                     /note="CoA binding site [chemical binding]"
                     /db_xref="CDD:341228"
     CDS             1..530
                     /gene="ACSS3"
                     /coded_by="XM_054080125.1:468..2060"
                     /db_xref="GeneID:104061158"
ORIGIN      
        1 mvrhgvkkgd rvviympmip qtiycmlaca rigaihslif ggfaskelsv ridhakprli
       61 vtasfgvepk rkveyislle galarvqnkp dkvliykrpn lgdvpltpgr dldweeelak
      121 ahlhkcvsvp sdhplyilyt sgttglpkgv vrptggyavm lnwtmsavyg lkpgevwwaa
      181 sdlgwvvghs yicygpllhg nttvlyegkp vgtpdagayf rvlaehevaa fftsptaira
      241 irqqdpeaal gkqytlkrfr tlfvagehcd vdtlewskkv fkvpvldhww qtesgsaita
      301 sciglgnstt pppgqagkpv pgynvmilde nkepvkvktl gnivvklplp pgafsslwen
      361 qetfqklyfq kfpgyydtmd agymdedgyl yvlsraddvi nvaghrisag aieecilfhh
      421 avadcavvgr edplkghvpf alcvlregvk tekekileei vdrvrnnigp vaafqkgvfv
      481 kqlpktrsgk iprsalsalv sgkpykitpt iedasvfkhi eevlkknkig
//
LOCUS       XP_053936117             298 aa            linear   VRT 09-MAR-2023
DEFINITION  protein lin-7 homolog A [Cuculus canorus].
ACCESSION   XP_053936117
VERSION     XP_053936117.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080142.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..298
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..298
                     /product="protein lin-7 homolog A"
                     /calculated_mol_wt=32183
     Region          98..150
                     /region_name="L27"
                     /note="domain in receptor targeting proteins Lin-2 and
                     Lin-7; smart00569"
                     /db_xref="CDD:197794"
     Region          172..257
                     /region_name="PDZ_Lin-7-like"
                     /note="PDZ domain of protein Lin-7 and related domains;
                     cd06796"
                     /db_xref="CDD:467258"
     Site            order(184..190,202,205,235,239,242..243)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467258"
     CDS             1..298
                     /gene="LIN7A"
                     /coded_by="XM_054080142.1:51..947"
                     /db_xref="GeneID:104061159"
ORIGIN      
        1 mpaaragprr aalrpqhrga psalsrpllg tfsasasssf ssshgatlll rplslpastp
       61 pvpalhagaa rhsgcspaad matvtavqpl tldrdvarai elleklqesg evpvhklqsl
      121 kkvlqsefct airevyqymh etitvngcpe fraratakat vaafaasegh shprvvelpk
      181 tdeglgfnvm ggkeqnspiy isriipggva erhgglkrgd qllsvngvsv egehhekave
      241 llkaakdsvk lvvrytpkvl eemearfekl rtarrrqqqq lliqqqqqqq ttqqnhms
//
LOCUS       XP_053936131             238 aa            linear   VRT 09-MAR-2023
DEFINITION  tetraspanin-8 [Cuculus canorus].
ACCESSION   XP_053936131
VERSION     XP_053936131.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080156.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..238
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..238
                     /product="tetraspanin-8"
                     /calculated_mol_wt=26416
     Region          9..233
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     CDS             1..238
                     /gene="TSPAN8"
                     /coded_by="XM_054080156.1:111..827"
                     /db_xref="GeneID:104063907"
ORIGIN      
        1 magvsncmky smfifnflfw vcgsiilgvs iwirvgiddq qeinsnmlvg anlliavgsi
       61 imvlgflgcc gaikesrcml llffigllli lilqiaggil gavyrsqiee avklsleqnv
      121 yllqssseea kefqesfqkf eqmnqccglv ngptdwgknf ntafgsskac eceqkdppkd
      181 lcvyfqsryv yktpcehaii kylkenllii mgiafglaai eilglvfsms lycqiqrk
//
LOCUS       XP_053936155             740 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: F-BAR and double SH3 domains protein 2
            [Cuculus canorus].
ACCESSION   XP_053936155
VERSION     XP_053936155.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080180.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 2 indels
            internal stop codons :: corrected 1 genomic stop codons
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..740
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..740
                     /product="LOW QUALITY PROTEIN: F-BAR and double SH3
                     domains protein 2"
                     /calculated_mol_wt=83894
     Region          16..275
                     /region_name="F-BAR_FCHSD2"
                     /note="The F-BAR (FES-CIP4 Homology and
                     Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains
                     2 (FCHSD2); cd07677"
                     /db_xref="CDD:153361"
     Site            order(21,24,31,34..35,38,41..42,45..46,49,53,56,60,93,96,
                     194,198,223,228,231,234..235,238,242,245,249,253,256..257,
                     260)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:153361"
     Region          471..527
                     /region_name="SH3_FCHSD_1"
                     /note="First Src Homology 3 domain of FCH and double SH3
                     domains proteins; cd11761"
                     /db_xref="CDD:212695"
     Site            order(478,480,483,487,506..507,521,523..524)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212695"
     Region          571..626
                     /region_name="SH3_FCHSD2_2"
                     /note="Second Src Homology 3 domain of FCH and double SH3
                     domains protein 2; cd11894"
                     /db_xref="CDD:212827"
     Site            order(576,578,581,585,606..607,620,622..623)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212827"
     CDS             1..740
                     /gene="FCHSD2"
                     /coded_by="XM_054080180.1:265..2487"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 1 base in 1 codon; substituted 1 base at 1 genomic
                     stop codon"
                     /db_xref="GeneID:104064118"
ORIGIN      
        1 mqppprkvkv tqelkniqve qmtklqakhq aecelledir afsqkraaie reyaqsiqkl
       61 asqylkkdwl gikadersdy rsmysvwksl legtmqvaqs rlnicenykn lisepartvr
      121 cfkeqqlkkc vdqltriqae lqetvkdlak gkkkyfeteq maqavrekad ieaksklslf
      181 qsrislqkas vklkarrsec nskaiharnd ylltlaaana hqdryyqtdl vnimkaldgn
      241 vydhlkdylm afsrteleac qavqntfqfl letssrvvrd ynlqlflqen svfhkpqpfq
      301 fqpsdsdtsr qlesetgtte ehslnkeark watrvarehk niihsqrtle elechgpvms
      361 eqtraeleqk idearesirk aeiiklkaea rldllkqigv svdtwlksam nqvmeelene
      421 rwaslplvtn ngsshpinad aekeegeefd dsmdvfddss sspsgtlrny pltckvvysy
      481 kasqpdelti eehevlevie dgdmedwvka rnkagqvgyv pekylqfpts sxllsmlqsl
      541 aaldsrsphl kxlteadlvs gtlngdssvc fvkalydyeg qtddelsfpe gaiirilnke
      601 nqdddgfweg efngrigvfp svlveeltas engetqwigd vqvsptpkpn nalpplplyd
      661 qpptspyhsp dkrgsqyfpk spstnensfs sespgfsqpp rippetsygk lrpvraappp
      721 ptqhhrrtte kiedveitlv
//
LOCUS       XP_009554731             511 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction alpha-3 protein [Cuculus canorus].
ACCESSION   XP_009554731
VERSION     XP_009554731.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556436.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554731.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..511
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..511
                     /product="gap junction alpha-3 protein"
                     /calculated_mol_wt=55466
     Region          3..249
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     Region          <293..357
                     /region_name="PHA03378"
                     /note="EBNA-3B; Provisional"
                     /db_xref="CDD:223065"
     Region          <459..511
                     /region_name="Connexin40_C"
                     /note="Connexin 40 C-terminal domain; cl46284"
                     /db_xref="CDD:480624"
     CDS             1..511
                     /gene="GJA3"
                     /coded_by="XM_009556436.2:100..1635"
                     /db_xref="GeneID:104055327"
ORIGIN      
        1 mgdwsflgrl lenaqehstv igkvwltvlf ifrilvlgaa aeevwgdeqs dftcntqqpg
       61 cenvcydkaf pishirfwvl qiifvstptl iylghvlhiv rmeekrkeke elkkkgsvkd
      121 snfpgaasss sgggggsssi kdplvkrgke kppirdergr irmggallrt yvfnivfktl
      181 fevgfivgqy flygfelkpv yqcsrspcph tvdcfisrpt ektifiifml vvasvsllln
      241 mlemyhlgwk klkqgmtnry slempvatmt pvmvtgeskp vslpppappv vittaapppv
      301 lpdtravtpl lapvtmapyy aaatprprpp sntasmasyp vappvpeerh ravtptpist
      361 pvtiptpipt ptpavvnyfn snshalaaeq nwvnmgaeqq gkalsssaas stpssvrhpl
      421 peqeepleql lpppavppla aansgsstsl sgasgnkwdv egeeelsegr pisaacttve
      481 mheppllvdt rrlsraskss scrarsddla v
//
LOCUS       XP_053936174             929 aa            linear   VRT 09-MAR-2023
DEFINITION  SCY1-like protein 2 [Cuculus canorus].
ACCESSION   XP_053936174
VERSION     XP_053936174.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080199.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..929
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..929
                     /product="SCY1-like protein 2"
                     /calculated_mol_wt=103024
     Region          38..329
                     /region_name="PK_SCY1_like"
                     /note="Pseudokinase domain of Scy1-like proteins; cd14011"
                     /db_xref="CDD:270913"
     Region          373..403
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Site            order(395..396,399,402..403,427..428,431,434..435,438,
                     466..467,470,473..474,477,506..507,510,513..514)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:293787"
     Region          413..438
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          448..478
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          487..514
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     CDS             1..929
                     /gene="SCYL2"
                     /coded_by="XM_054080199.1:181..2970"
                     /db_xref="GeneID:104068651"
ORIGIN      
        1 mesmlnklks tvtkvtadvt savmgnpvtr efdvgrhias ggnglawkif ngtkkstkqe
       61 vavfvfdkkl idkyqkfekd qiidslkrgv qqltrlrhpr lltvqhplee srdclafcte
      121 pvcaslanil gswdnlpspl psdikeyqly dvetkygllq vseglsflhs svkmvhgnit
      181 peniilnksg awkimgfdfc iqstnpsdqe pkfpckewdp nlpslclpnp eylapeyils
      241 vscetasdmy slgavmyavf nkgkpifevn kqdiyksfsr qldqlsrlsa gtlqnipeev
      301 rehvklllnv apavrpdadq mtkipffddv gamtlqyfds lfqrdnlqks qffkglpkvl
      361 pklpkrviiq rilpcltsef vnpdmvpfvl pnvlliaeec tkeeyiklil pdlgpvfkqq
      421 epiqillifl qkmdllltkt ppdeiknsvl pmvyraleap siqiqelcln iiptfanlid
      481 ypsmknslip riknaclqts slavrvnslv clgkileyld kwfvlddilp flqqipskep
      541 avlmgilgiy kctfthkklg itkeqlagkv lphliplsie nnlnlnqfns ficvikdmln
      601 rleaehktkl eqlhvmqeqq ksldianqms vseearssst snqidkvfnt sgtdlltses
      661 dskenemssk qkkasltlee kqrlakeqeq aqklksqqpl kpqatvitpp vqqtkdltdt
      721 lidkmsslts hsinkanvas sssfssvpsm gvgmgfsspi dntkrnvtng lntnmgfqta
      781 gfsmgagptt qnfftgpsat attkmnfvpt asmpnyspmn aasaispltq qnrppdmsal
      841 dnlfgpqkpk vsmkqmaqqk ssqwvnqfvp ppgspsasss vlgppmnmig qpgfgiqgnp
      901 ffspqnfaqp antmtnsssa sndlkdlfg
//
LOCUS       XP_053936183             929 aa            linear   VRT 09-MAR-2023
DEFINITION  SCY1-like protein 2 [Cuculus canorus].
ACCESSION   XP_053936183
VERSION     XP_053936183.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080208.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..929
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..929
                     /product="SCY1-like protein 2"
                     /calculated_mol_wt=103024
     Region          38..329
                     /region_name="PK_SCY1_like"
                     /note="Pseudokinase domain of Scy1-like proteins; cd14011"
                     /db_xref="CDD:270913"
     Region          373..403
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Site            order(395..396,399,402..403,427..428,431,434..435,438,
                     466..467,470,473..474,477,506..507,510,513..514)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:293787"
     Region          413..438
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          448..478
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          487..514
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     CDS             1..929
                     /gene="SCYL2"
                     /coded_by="XM_054080208.1:192..2981"
                     /db_xref="GeneID:104068651"
ORIGIN      
        1 mesmlnklks tvtkvtadvt savmgnpvtr efdvgrhias ggnglawkif ngtkkstkqe
       61 vavfvfdkkl idkyqkfekd qiidslkrgv qqltrlrhpr lltvqhplee srdclafcte
      121 pvcaslanil gswdnlpspl psdikeyqly dvetkygllq vseglsflhs svkmvhgnit
      181 peniilnksg awkimgfdfc iqstnpsdqe pkfpckewdp nlpslclpnp eylapeyils
      241 vscetasdmy slgavmyavf nkgkpifevn kqdiyksfsr qldqlsrlsa gtlqnipeev
      301 rehvklllnv apavrpdadq mtkipffddv gamtlqyfds lfqrdnlqks qffkglpkvl
      361 pklpkrviiq rilpcltsef vnpdmvpfvl pnvlliaeec tkeeyiklil pdlgpvfkqq
      421 epiqillifl qkmdllltkt ppdeiknsvl pmvyraleap siqiqelcln iiptfanlid
      481 ypsmknslip riknaclqts slavrvnslv clgkileyld kwfvlddilp flqqipskep
      541 avlmgilgiy kctfthkklg itkeqlagkv lphliplsie nnlnlnqfns ficvikdmln
      601 rleaehktkl eqlhvmqeqq ksldianqms vseearssst snqidkvfnt sgtdlltses
      661 dskenemssk qkkasltlee kqrlakeqeq aqklksqqpl kpqatvitpp vqqtkdltdt
      721 lidkmsslts hsinkanvas sssfssvpsm gvgmgfsspi dntkrnvtng lntnmgfqta
      781 gfsmgagptt qnfftgpsat attkmnfvpt asmpnyspmn aasaispltq qnrppdmsal
      841 dnlfgpqkpk vsmkqmaqqk ssqwvnqfvp ppgspsasss vlgppmnmig qpgfgiqgnp
      901 ffspqnfaqp antmtnsssa sndlkdlfg
//
LOCUS       XP_053936192             929 aa            linear   VRT 09-MAR-2023
DEFINITION  SCY1-like protein 2 [Cuculus canorus].
ACCESSION   XP_053936192
VERSION     XP_053936192.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080217.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..929
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..929
                     /product="SCY1-like protein 2"
                     /calculated_mol_wt=103024
     Region          38..329
                     /region_name="PK_SCY1_like"
                     /note="Pseudokinase domain of Scy1-like proteins; cd14011"
                     /db_xref="CDD:270913"
     Region          373..403
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Site            order(395..396,399,402..403,427..428,431,434..435,438,
                     466..467,470,473..474,477,506..507,510,513..514)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:293787"
     Region          413..438
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          448..478
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          487..514
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     CDS             1..929
                     /gene="SCYL2"
                     /coded_by="XM_054080217.1:44..2833"
                     /db_xref="GeneID:104068651"
ORIGIN      
        1 mesmlnklks tvtkvtadvt savmgnpvtr efdvgrhias ggnglawkif ngtkkstkqe
       61 vavfvfdkkl idkyqkfekd qiidslkrgv qqltrlrhpr lltvqhplee srdclafcte
      121 pvcaslanil gswdnlpspl psdikeyqly dvetkygllq vseglsflhs svkmvhgnit
      181 peniilnksg awkimgfdfc iqstnpsdqe pkfpckewdp nlpslclpnp eylapeyils
      241 vscetasdmy slgavmyavf nkgkpifevn kqdiyksfsr qldqlsrlsa gtlqnipeev
      301 rehvklllnv apavrpdadq mtkipffddv gamtlqyfds lfqrdnlqks qffkglpkvl
      361 pklpkrviiq rilpcltsef vnpdmvpfvl pnvlliaeec tkeeyiklil pdlgpvfkqq
      421 epiqillifl qkmdllltkt ppdeiknsvl pmvyraleap siqiqelcln iiptfanlid
      481 ypsmknslip riknaclqts slavrvnslv clgkileyld kwfvlddilp flqqipskep
      541 avlmgilgiy kctfthkklg itkeqlagkv lphliplsie nnlnlnqfns ficvikdmln
      601 rleaehktkl eqlhvmqeqq ksldianqms vseearssst snqidkvfnt sgtdlltses
      661 dskenemssk qkkasltlee kqrlakeqeq aqklksqqpl kpqatvitpp vqqtkdltdt
      721 lidkmsslts hsinkanvas sssfssvpsm gvgmgfsspi dntkrnvtng lntnmgfqta
      781 gfsmgagptt qnfftgpsat attkmnfvpt asmpnyspmn aasaispltq qnrppdmsal
      841 dnlfgpqkpk vsmkqmaqqk ssqwvnqfvp ppgspsasss vlgppmnmig qpgfgiqgnp
      901 ffspqnfaqp antmtnsssa sndlkdlfg
//
LOCUS       XP_009555323            2035 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: coagulation factor V [Cuculus canorus].
ACCESSION   XP_009555323
VERSION     XP_009555323.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557028.2
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555323.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2035
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2035
                     /product="LOW QUALITY PROTEIN: coagulation factor V"
                     /calculated_mol_wt=229446
     Region          129..294
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          306..424
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          446..626
                     /region_name="CuRO_3_FV_like"
                     /note="The third cupredoxin domain of coagulation factor V
                     and similar proteins; cd14450"
                     /db_xref="CDD:259992"
     Region          639..782
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          1383..1555
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          1568..1703
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          1711..1858
                     /region_name="FA58C"
                     /note="Coagulation factor 5/8 C-terminal domain, discoidin
                     domain; Cell surface-attached carbohydrate-binding domain,
                     present in eukaryotes and assumed to have horizontally
                     transferred to eubacterial genomes; cd00057"
                     /db_xref="CDD:238014"
     Site            order(1750,1779,1786)
                     /site_type="other"
                     /note="sugar binding site [chemical binding]"
                     /db_xref="CDD:238014"
     Region          1867..2017
                     /region_name="FA58C"
                     /note="Coagulation factor 5/8 C-terminal domain, discoidin
                     domain; Cell surface-attached carbohydrate-binding domain,
                     present in eukaryotes and assumed to have horizontally
                     transferred to eubacterial genomes; cd00057"
                     /db_xref="CDD:238014"
     Site            order(1910,1938,1945)
                     /site_type="other"
                     /note="sugar binding site [chemical binding]"
                     /db_xref="CDD:238014"
     CDS             1..2035
                     /gene="F5"
                     /coded_by="XM_009557028.2:16..6123"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon;
                     substituted 1 base at 1 genomic stop codon"
                     /db_xref="GeneID:104055842"
ORIGIN      
        1 mthpqsvvgl kllllgvclt edgveegkeg slnslslldl cqxgeeevks ndlsianalt
       61 llhhnyfise gkleaaaaik vavsasssra asagictmtl hcmrlfllll lrswwpdsek
      121 hvvgatkvre hyiaaqitsw tyklkseeks rlehsdlvfk kisyreyeed fkkekpanvf
      181 agllgptlha evgdtlvvhl knmadkpvsi hpqgvlynkn aegslyddrt ssvekrddav
      241 lpgqiytyvw diteevgpre ddlpcltyty yshenmamdf nsgligalli ckkgslnedg
      301 sqklfdkeyv lmfgvfdenk swqrsasvky tingytdgtl pdleacaydn iswhligmss
      361 kpeifsihin gqsmeqrhrr vstvnlvgga sttvnmtvsk egrwlisslv qkhlqagmhg
      421 yltirdcgnk evkkshlsyk erlmvkswey fiaaeevtwd yapsipdsld rqykaqhldn
      481 fsnligkkyk kaifrqytda sftkrlenpr pketgilgpv iraqlndkvk vvfknkasrp
      541 ysiyfhgvtl sksaegadyp ldptgndtqs kgiepgktyt yewtiaktdq ptahdaqcit
      601 rlyhsavdie rdiasgligp llicksealt qkgvqkkadg eqqamfavfd enkswyledn
      661 ikeycstpas vkrddakfyn snimhtingy vsdsseilgf cqdsvvqwhf ssvgthdeiv
      721 svrlsghsfl yqgkyedvln lfpmsgesvt vemdnvgtwl laswgtpems hgmrlryrda
      781 rcdyegddlf dvvdftytkt dkkavstsve envqeedkdd ldyqdylasf ysirslrktt
      841 ggeekqnlta laweqyegpd nvgsevalgs gladinntes tntykfletr gtphrpveae
      901 tfqsshasvt aeedlfldst sdgkadfvse nrsqssyetd hsstspgerl lsngegqmsv
      961 aeelptdeed gkffsekhee esvgrgnydt ntkrkrrnsl amkfysvqkm nallnhvrnk
     1021 nvsfsdktsa phpvhyadnt sdtdkvgmrq lpndydddel edeetkmena mhavnltlal
     1081 dlivgdgssa sslskpklaq vkqadafsve htlgnispns spavgknlle asmpragkys
     1141 skitneewnl vsakgslgle anldksvsgk lnhhgrndta finkkrikty qglshlmgek
     1201 rngshmrstl kgkegnkndt pstsgtfiki rrkkkeypkm shllsprskk pqhitnsmae
     1261 fgrvlfpakt nhtalpccpn ttaapheanh tvnvskarhg eslnytltpr qlkpsitigl
     1321 pqengdyeyf megyyseets ggeyeyhyvs fddpymtdpk vnvneqrnpe niaehylrsk
     1381 gnerryyiaa kevcwnyagy kkstmmndkt ckdgttrkvi fqsytdssft tlqdedeyne
     1441 hlgilgpvir aevddvilvh fknlasrpys lhahgllydk ssegsiydde stawfkedde
     1501 vqpnnsyiyv wyasrrsgpv qsgaacrswi yysdvnlekd ihsgligpil vcqkgtfsks
     1561 snnkaptrdf fllfmvfdee kswyfdkrsr rpctertqet qqchkfhain gitynlqglr
     1621 mfegelvrwh llnmggpkdi hvvnfhgqpf ieqgepkhql gtytllpgsf rtiemkpqrp
     1681 gwwlldtevg eyqqagmqas ylviekecri pmgltsgvil dsqidashhi dywepklarl
     1741 nnsgsynaws ttmkaeelpw iqvdfqrqvl ltgiqtqgak qflkslyvqk ffivyskdkr
     1801 kwstfkgdsa pvqkifegns daygikenii dppiiaryir vypteaynrp tlrmellgce
     1861 vdgcslplgm engeikntqi tasstktswf ntwdpslarl nqkgklnawr aklnnnqqwl
     1921 qidllsikki tavatqgaks isgenfvkty viqysdqgse wksytdgsss vakvflgnen
     1981 ssghvkhffn ppimsrfiri vprtwyhgia lrvelygcdf rgglavkrtd tsrsf
//
LOCUS       XP_009555537             343 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 51H1 [Cuculus canorus].
ACCESSION   XP_009555537
VERSION     XP_009555537.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557242.2
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555537.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..343
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..343
                     /product="olfactory receptor 51H1"
                     /calculated_mol_wt=38231
     Region          52..326
                     /region_name="7tmA_OR51-like"
                     /note="olfactory receptor family 51 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15222"
                     /db_xref="CDD:320350"
     Region          53..79
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320350"
     Region          86..112
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320350"
     Site            order(108,111..112,124..129,131..132,135,180,182..186,222,
                     225..227,229..231,233..234,279,282..283,285..286,289,
                     297..298,300..302,305,308..309)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320350"
     Region          124..154
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320350"
     Region          167..188
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320350"
     Region          222..252
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320350"
     Region          259..289
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320350"
     Region          298..323
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320350"
     CDS             1..343
                     /gene="LOC104056035"
                     /coded_by="XM_009557242.2:70..1101"
                     /db_xref="GeneID:104056035"
ORIGIN      
        1 megahcmvli prhhyfqtlr ssmcemsscn rtgsypltfi ltgipgllts sywmalplcc
       61 lyllmllgnc tllwtiktdr slhtpmycfl smlavadlgl slstlptmla ifwfnstslc
      121 feacvvqmyf ihsfsaiesg vlvamafdrf iaicyplhya svltnslimk aggaifmrgi
      181 cvvlpvaili kkmpfcrsrv lshsfclhqd mlrlvcgdkk fnslygltav iltkgldsvt
      241 illsyvviir aissivsqea rakafstcis hlcavlifyi pliglsithr fgkhlpplth
      301 tlladayllv ppvlnplvys wktkqvrrri lillcrrgir qpg
//
LOCUS       XP_053936221             446 aa            linear   VRT 09-MAR-2023
DEFINITION  origin recognition complex subunit 5 [Cuculus canorus].
ACCESSION   XP_053936221
VERSION     XP_053936221.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080246.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..446
                     /product="origin recognition complex subunit 5"
                     /calculated_mol_wt=51415
     Region          21..166
                     /region_name="AAA_16"
                     /note="AAA ATPase domain; pfam13191"
                     /db_xref="CDD:433025"
     Region          188..442
                     /region_name="ORC5_C"
                     /note="Origin recognition complex (ORC) subunit 5
                     C-terminus; pfam14630"
                     /db_xref="CDD:464224"
     CDS             1..446
                     /gene="ORC5"
                     /coded_by="XM_054080246.1:91..1431"
                     /db_xref="GeneID:104061752"
ORIGIN      
        1 mpnlehpayp aatllqlesl vpcresqvsm llsifgerqq fsfpsifiyg htssgktyvm
       61 ktllntlklp hvfvncveyf tsrllleeil mqlqscsetq qtshvpcdnf sdfvrlfkqa
      121 vasrelqdqt vyivldraeq lremeanilp aflrlqeltd rnvtvillte ivwelfrpit
      181 gcfepltlyf pdysiahlqk ilsqnhppey sadfyaayin illgvfymvc rdlkelqhla
      241 vlnfskycep vvrgeanerd thklwkniep hlkkamqtvy lreisssqwe rlqhdngepg
      301 qlkgisahth velpyyskfl liaaylasyn partdkrffl khhgkirktn smkkhektss
      361 hligpkpfpl drllailysi vdnrvaptan ifsqitslvt lqllsmvghn dqldgprykc
      421 tvsldfirav artvnfdiik ylydfl
//
LOCUS       XP_053936232             446 aa            linear   VRT 09-MAR-2023
DEFINITION  origin recognition complex subunit 5 [Cuculus canorus].
ACCESSION   XP_053936232
VERSION     XP_053936232.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080257.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..446
                     /product="origin recognition complex subunit 5"
                     /calculated_mol_wt=51415
     Region          21..166
                     /region_name="AAA_16"
                     /note="AAA ATPase domain; pfam13191"
                     /db_xref="CDD:433025"
     Region          188..442
                     /region_name="ORC5_C"
                     /note="Origin recognition complex (ORC) subunit 5
                     C-terminus; pfam14630"
                     /db_xref="CDD:464224"
     CDS             1..446
                     /gene="ORC5"
                     /coded_by="XM_054080257.1:301..1641"
                     /db_xref="GeneID:104061752"
ORIGIN      
        1 mpnlehpayp aatllqlesl vpcresqvsm llsifgerqq fsfpsifiyg htssgktyvm
       61 ktllntlklp hvfvncveyf tsrllleeil mqlqscsetq qtshvpcdnf sdfvrlfkqa
      121 vasrelqdqt vyivldraeq lremeanilp aflrlqeltd rnvtvillte ivwelfrpit
      181 gcfepltlyf pdysiahlqk ilsqnhppey sadfyaayin illgvfymvc rdlkelqhla
      241 vlnfskycep vvrgeanerd thklwkniep hlkkamqtvy lreisssqwe rlqhdngepg
      301 qlkgisahth velpyyskfl liaaylasyn partdkrffl khhgkirktn smkkhektss
      361 hligpkpfpl drllailysi vdnrvaptan ifsqitslvt lqllsmvghn dqldgprykc
      421 tvsldfirav artvnfdiik ylydfl
//
LOCUS       XP_053936242             446 aa            linear   VRT 09-MAR-2023
DEFINITION  origin recognition complex subunit 5 [Cuculus canorus].
ACCESSION   XP_053936242
VERSION     XP_053936242.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080267.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..446
                     /product="origin recognition complex subunit 5"
                     /calculated_mol_wt=51415
     Region          21..166
                     /region_name="AAA_16"
                     /note="AAA ATPase domain; pfam13191"
                     /db_xref="CDD:433025"
     Region          188..442
                     /region_name="ORC5_C"
                     /note="Origin recognition complex (ORC) subunit 5
                     C-terminus; pfam14630"
                     /db_xref="CDD:464224"
     CDS             1..446
                     /gene="ORC5"
                     /coded_by="XM_054080267.1:305..1645"
                     /db_xref="GeneID:104061752"
ORIGIN      
        1 mpnlehpayp aatllqlesl vpcresqvsm llsifgerqq fsfpsifiyg htssgktyvm
       61 ktllntlklp hvfvncveyf tsrllleeil mqlqscsetq qtshvpcdnf sdfvrlfkqa
      121 vasrelqdqt vyivldraeq lremeanilp aflrlqeltd rnvtvillte ivwelfrpit
      181 gcfepltlyf pdysiahlqk ilsqnhppey sadfyaayin illgvfymvc rdlkelqhla
      241 vlnfskycep vvrgeanerd thklwkniep hlkkamqtvy lreisssqwe rlqhdngepg
      301 qlkgisahth velpyyskfl liaaylasyn partdkrffl khhgkirktn smkkhektss
      361 hligpkpfpl drllailysi vdnrvaptan ifsqitslvt lqllsmvghn dqldgprykc
      421 tvsldfirav artvnfdiik ylydfl
//
LOCUS       XP_053936276             371 aa            linear   VRT 09-MAR-2023
DEFINITION  patatin-like phospholipase domain-containing protein 4 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053936276
VERSION     XP_053936276.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080301.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..371
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..371
                     /product="patatin-like phospholipase domain-containing
                     protein 4 isoform X1"
                     /calculated_mol_wt=41128
     Region          123..368
                     /region_name="Pat_PNPLA4"
                     /note="Patatin-like phospholipase domain containing
                     protein 4; cd07222"
                     /db_xref="CDD:132861"
     Site            order(129..130,132,161,281)
                     /site_type="active"
                     /db_xref="CDD:132861"
     Site            159..163
                     /site_type="other"
                     /note="nucleophile elbow"
                     /db_xref="CDD:132861"
     CDS             1..371
                     /gene="PNPLA4"
                     /coded_by="XM_054080301.1:200..1315"
                     /db_xref="GeneID:104063733"
ORIGIN      
        1 mvkqllrvsv wlphpevtlk kmstaksffd sqilllklke grlrscvfpk tqqfcigiln
       61 yctirmphnr vkfqvskvnd qrsvvdptta tsaegtkvaa gkhpsavrdg sqhsleanmk
      121 hinlsfaacg flgiyhlgaa aafykhgkkl lkvvkafaga sagslaatvl ltvpenmekc
      181 kqftygfaee vrkldfgavt pgydfmktlr dgiesilpsn aheiaenrly vsvtntkngk
      241 nhlvssfasr edlikvllas sfvpvyagmk pveykgekwv dggltnslpi lpvgrtvtis
      301 pfsgrldicp qdkgrvdlyv kfgkqdimls lanlvrfnqa ffppnrekme slyqngfdda
      361 vhfllkenwf e
//
LOCUS       XP_053936286             371 aa            linear   VRT 09-MAR-2023
DEFINITION  patatin-like phospholipase domain-containing protein 4 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053936286
VERSION     XP_053936286.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080311.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..371
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..371
                     /product="patatin-like phospholipase domain-containing
                     protein 4 isoform X1"
                     /calculated_mol_wt=41128
     Region          123..368
                     /region_name="Pat_PNPLA4"
                     /note="Patatin-like phospholipase domain containing
                     protein 4; cd07222"
                     /db_xref="CDD:132861"
     Site            order(129..130,132,161,281)
                     /site_type="active"
                     /db_xref="CDD:132861"
     Site            159..163
                     /site_type="other"
                     /note="nucleophile elbow"
                     /db_xref="CDD:132861"
     CDS             1..371
                     /gene="PNPLA4"
                     /coded_by="XM_054080311.1:2026..3141"
                     /db_xref="GeneID:104063733"
ORIGIN      
        1 mvkqllrvsv wlphpevtlk kmstaksffd sqilllklke grlrscvfpk tqqfcigiln
       61 yctirmphnr vkfqvskvnd qrsvvdptta tsaegtkvaa gkhpsavrdg sqhsleanmk
      121 hinlsfaacg flgiyhlgaa aafykhgkkl lkvvkafaga sagslaatvl ltvpenmekc
      181 kqftygfaee vrkldfgavt pgydfmktlr dgiesilpsn aheiaenrly vsvtntkngk
      241 nhlvssfasr edlikvllas sfvpvyagmk pveykgekwv dggltnslpi lpvgrtvtis
      301 pfsgrldicp qdkgrvdlyv kfgkqdimls lanlvrfnqa ffppnrekme slyqngfdda
      361 vhfllkenwf e
//
LOCUS       XP_053936295             371 aa            linear   VRT 09-MAR-2023
DEFINITION  patatin-like phospholipase domain-containing protein 4 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053936295
VERSION     XP_053936295.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080320.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..371
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..371
                     /product="patatin-like phospholipase domain-containing
                     protein 4 isoform X1"
                     /calculated_mol_wt=41128
     Region          123..368
                     /region_name="Pat_PNPLA4"
                     /note="Patatin-like phospholipase domain containing
                     protein 4; cd07222"
                     /db_xref="CDD:132861"
     Site            order(129..130,132,161,281)
                     /site_type="active"
                     /db_xref="CDD:132861"
     Site            159..163
                     /site_type="other"
                     /note="nucleophile elbow"
                     /db_xref="CDD:132861"
     CDS             1..371
                     /gene="PNPLA4"
                     /coded_by="XM_054080320.1:107..1222"
                     /db_xref="GeneID:104063733"
ORIGIN      
        1 mvkqllrvsv wlphpevtlk kmstaksffd sqilllklke grlrscvfpk tqqfcigiln
       61 yctirmphnr vkfqvskvnd qrsvvdptta tsaegtkvaa gkhpsavrdg sqhsleanmk
      121 hinlsfaacg flgiyhlgaa aafykhgkkl lkvvkafaga sagslaatvl ltvpenmekc
      181 kqftygfaee vrkldfgavt pgydfmktlr dgiesilpsn aheiaenrly vsvtntkngk
      241 nhlvssfasr edlikvllas sfvpvyagmk pveykgekwv dggltnslpi lpvgrtvtis
      301 pfsgrldicp qdkgrvdlyv kfgkqdimls lanlvrfnqa ffppnrekme slyqngfdda
      361 vhfllkenwf e
//
LOCUS       XP_053936297             360 aa            linear   VRT 09-MAR-2023
DEFINITION  patatin-like phospholipase domain-containing protein 4 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053936297
VERSION     XP_053936297.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080322.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..360
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..360
                     /product="patatin-like phospholipase domain-containing
                     protein 4 isoform X2"
                     /calculated_mol_wt=39900
     Region          114..357
                     /region_name="Pat_PNPLA4"
                     /note="Patatin-like phospholipase domain containing
                     protein 4; cd07222"
                     /db_xref="CDD:132861"
     Site            order(118..119,121,150,270)
                     /site_type="active"
                     /db_xref="CDD:132861"
     Site            148..152
                     /site_type="other"
                     /note="nucleophile elbow"
                     /db_xref="CDD:132861"
     CDS             1..360
                     /gene="PNPLA4"
                     /coded_by="XM_054080322.1:2143..3225"
                     /db_xref="GeneID:104063733"
ORIGIN      
        1 mvkqllrvsv wlphpevtlk kmstaksffd sqilllklke grlrscvfpk tqqfcigiln
       61 yctirmphnr vkfqvskvnd qrsvvdptta tsaegtkvaa gkhpsavrdg sqhsleacgf
      121 lgiyhlgaaa afykhgkkll kvvkafagas agslaatvll tvpenmekck qftygfaeev
      181 rkldfgavtp gydfmktlrd giesilpsna heiaenrlyv svtntkngkn hlvssfasre
      241 dlikvllass fvpvyagmkp veykgekwvd ggltnslpil pvgrtvtisp fsgrldicpq
      301 dkgrvdlyvk fgkqdimlsl anlvrfnqaf fppnrekmes lyqngfddav hfllkenwfe
//
LOCUS       XP_053936306             194 aa            linear   VRT 09-MAR-2023
DEFINITION  patatin-like phospholipase domain-containing protein 4 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053936306
VERSION     XP_053936306.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080331.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..194
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..194
                     /product="patatin-like phospholipase domain-containing
                     protein 4 isoform X3"
                     /calculated_mol_wt=21838
     Region          <2..191
                     /region_name="Pat_PNPLA4"
                     /note="Patatin-like phospholipase domain containing
                     protein 4; cd07222"
                     /db_xref="CDD:132861"
     CDS             1..194
                     /gene="PNPLA4"
                     /coded_by="XM_054080331.1:131..715"
                     /db_xref="GeneID:104063733"
ORIGIN      
        1 mkckqftygf aeevrkldfg avtpgydfmk tlrdgiesil psnaheiaen rlyvsvtntk
       61 ngknhlvssf asredlikvl lassfvpvya gmkpveykge kwvdggltns lpilpvgrtv
      121 tispfsgrld icpqdkgrvd lyvkfgkqdi mlslanlvrf nqaffppnre kmeslyqngf
      181 ddavhfllke nwfe
//
LOCUS       XP_053936316             166 aa            linear   VRT 09-MAR-2023
DEFINITION  patatin-like phospholipase domain-containing protein 4 isoform X4
            [Cuculus canorus].
ACCESSION   XP_053936316
VERSION     XP_053936316.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080341.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..166
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..166
                     /product="patatin-like phospholipase domain-containing
                     protein 4 isoform X4"
                     /calculated_mol_wt=18607
     Region          <1..163
                     /region_name="Patatin_and_cPLA2"
                     /note="Patatins and Phospholipases; cl11396"
                     /db_xref="CDD:416256"
     CDS             1..166
                     /gene="PNPLA4"
                     /coded_by="XM_054080341.1:207..707"
                     /db_xref="GeneID:104063733"
ORIGIN      
        1 mktlrdgies ilpsnaheia enrlyvsvtn tkngknhlvs sfasredlik vllassfvpv
       61 yagmkpveyk gekwvdgglt nslpilpvgr tvtispfsgr ldicpqdkgr vdlyvkfgkq
      121 dimlslanlv rfnqaffppn rekmeslyqn gfddavhfll kenwfe
//
LOCUS       XP_009555583             346 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: olfactory receptor 51Q1-like [Cuculus
            canorus].
ACCESSION   XP_009555583
VERSION     XP_009555583.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557288.2
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555583.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 8% of CDS bases
            internal stop codons :: corrected 2 genomic stop codon
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..346
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..346
                     /product="LOW QUALITY PROTEIN: olfactory receptor
                     51Q1-like"
                     /calculated_mol_wt=38345
     Region          50..320
                     /region_name="7tmA_OR51-like"
                     /note="olfactory receptor family 51 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15222"
                     /db_xref="CDD:320350"
     Region          51..77
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320350"
     Region          84..110
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320350"
     Site            order(106,109..110,122..127,129..130,133,177,179..183,219,
                     222..224,226..228,230..231,275,278..279,281..282,285,
                     293..294,296..298,301,304..305)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320350"
     Region          122..152
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320350"
     Region          165..185
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320350"
     Region          219..248
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320350"
     Region          255..285
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320350"
     Region          294..319
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320350"
     CDS             1..346
                     /gene="LOC104056074"
                     /coded_by="XM_009557288.2:1..1041"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 2 bases at 2
                     genomic stop codons"
                     /db_xref="GeneID:104056074"
ORIGIN      
        1 mswegggrge indvidftgw qlggsvaprn ssraltflmm gipqvshfhh rvsipcclmc
       61 liaklgndii lpfmkadqkl hqptyyflsm latmdlglil stpptvlhvi wfgtreisfl
      121 irltqkfsih afsfmessvv lamafdcyva icyllryssi ltnariaktg lgafccsltl
      181 lppvclltxl pfsrshmlsh pyclhqdmiq lacadstlns rysltlvllv iidsmlitls
      241 ytmiikavla mtsreextka lntsishfca vlafylplis lsivhqygkn tapfthvfla
      301 nvylfvppvl nliiysmknk alckglirll cqrldwtghg qqprgh
//
LOCUS       XP_053936342             408 aa            linear   VRT 09-MAR-2023
DEFINITION  tumor necrosis factor receptor superfamily member 19 [Cuculus
            canorus].
ACCESSION   XP_053936342
VERSION     XP_053936342.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080367.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..408
                     /product="tumor necrosis factor receptor superfamily
                     member 19"
                     /calculated_mol_wt=44760
     Region          32..148
                     /region_name="TNFRSF19"
                     /note="Tumor necrosis factor receptor superfamily member
                     19 (TNFRSF19), also known as TROY; cd13418"
                     /db_xref="CDD:276923"
     Region          33..71
                     /region_name="CRD1"
                     /note="CRD1 [structural motif]"
                     /db_xref="CDD:276923"
     Region          74..113
                     /region_name="CRD2"
                     /note="CRD2 [structural motif]"
                     /db_xref="CDD:276923"
     Region          116..148
                     /region_name="CRD3"
                     /note="CRD3 [structural motif]"
                     /db_xref="CDD:276923"
     CDS             1..408
                     /gene="TNFRSF19"
                     /coded_by="XM_054080367.1:110..1336"
                     /db_xref="GeneID:104064152"
ORIGIN      
        1 mvakglqred klkmliilla yllnrvicet gdcreqefrd hngncilcrq cgpgmelske
       61 cgfgygedaq cmtcrpnrfk edwgfqkckp cldcalvnrf qkancsatsn alcgdclpgf
      121 yrktklggfq dmecvpcgdp pppyephctt kvnlvkipst assprdtala avicsalatv
      181 llallilcvi yckrqfmekk pswslrsqdi hyngselscf drprlseydh rtccqcqrst
      241 sqtcgpvhli pslccdetcs mehsshscaf hsqttlnera dsvgemipaf lgslshsacg
      301 disdawplmq nsaccdsisf sesyseradg sakscspete ktasiesdnn qelnevlisa
      361 ntldgniaes feiskhrtct edsllqnsva aetqpktkhn gtandstd
//
LOCUS       XP_053936351             408 aa            linear   VRT 09-MAR-2023
DEFINITION  tumor necrosis factor receptor superfamily member 19 [Cuculus
            canorus].
ACCESSION   XP_053936351
VERSION     XP_053936351.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080376.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..408
                     /product="tumor necrosis factor receptor superfamily
                     member 19"
                     /calculated_mol_wt=44760
     Region          32..148
                     /region_name="TNFRSF19"
                     /note="Tumor necrosis factor receptor superfamily member
                     19 (TNFRSF19), also known as TROY; cd13418"
                     /db_xref="CDD:276923"
     Region          33..71
                     /region_name="CRD1"
                     /note="CRD1 [structural motif]"
                     /db_xref="CDD:276923"
     Region          74..113
                     /region_name="CRD2"
                     /note="CRD2 [structural motif]"
                     /db_xref="CDD:276923"
     Region          116..148
                     /region_name="CRD3"
                     /note="CRD3 [structural motif]"
                     /db_xref="CDD:276923"
     CDS             1..408
                     /gene="TNFRSF19"
                     /coded_by="XM_054080376.1:358..1584"
                     /db_xref="GeneID:104064152"
ORIGIN      
        1 mvakglqred klkmliilla yllnrvicet gdcreqefrd hngncilcrq cgpgmelske
       61 cgfgygedaq cmtcrpnrfk edwgfqkckp cldcalvnrf qkancsatsn alcgdclpgf
      121 yrktklggfq dmecvpcgdp pppyephctt kvnlvkipst assprdtala avicsalatv
      181 llallilcvi yckrqfmekk pswslrsqdi hyngselscf drprlseydh rtccqcqrst
      241 sqtcgpvhli pslccdetcs mehsshscaf hsqttlnera dsvgemipaf lgslshsacg
      301 disdawplmq nsaccdsisf sesyseradg sakscspete ktasiesdnn qelnevlisa
      361 ntldgniaes feiskhrtct edsllqnsva aetqpktkhn gtandstd
//
LOCUS       XP_053936359             408 aa            linear   VRT 09-MAR-2023
DEFINITION  tumor necrosis factor receptor superfamily member 19 [Cuculus
            canorus].
ACCESSION   XP_053936359
VERSION     XP_053936359.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080384.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..408
                     /product="tumor necrosis factor receptor superfamily
                     member 19"
                     /calculated_mol_wt=44760
     Region          32..148
                     /region_name="TNFRSF19"
                     /note="Tumor necrosis factor receptor superfamily member
                     19 (TNFRSF19), also known as TROY; cd13418"
                     /db_xref="CDD:276923"
     Region          33..71
                     /region_name="CRD1"
                     /note="CRD1 [structural motif]"
                     /db_xref="CDD:276923"
     Region          74..113
                     /region_name="CRD2"
                     /note="CRD2 [structural motif]"
                     /db_xref="CDD:276923"
     Region          116..148
                     /region_name="CRD3"
                     /note="CRD3 [structural motif]"
                     /db_xref="CDD:276923"
     CDS             1..408
                     /gene="TNFRSF19"
                     /coded_by="XM_054080384.1:1158..2384"
                     /db_xref="GeneID:104064152"
ORIGIN      
        1 mvakglqred klkmliilla yllnrvicet gdcreqefrd hngncilcrq cgpgmelske
       61 cgfgygedaq cmtcrpnrfk edwgfqkckp cldcalvnrf qkancsatsn alcgdclpgf
      121 yrktklggfq dmecvpcgdp pppyephctt kvnlvkipst assprdtala avicsalatv
      181 llallilcvi yckrqfmekk pswslrsqdi hyngselscf drprlseydh rtccqcqrst
      241 sqtcgpvhli pslccdetcs mehsshscaf hsqttlnera dsvgemipaf lgslshsacg
      301 disdawplmq nsaccdsisf sesyseradg sakscspete ktasiesdnn qelnevlisa
      361 ntldgniaes feiskhrtct edsllqnsva aetqpktkhn gtandstd
//
LOCUS       XP_053936366             408 aa            linear   VRT 09-MAR-2023
DEFINITION  tumor necrosis factor receptor superfamily member 19 [Cuculus
            canorus].
ACCESSION   XP_053936366
VERSION     XP_053936366.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080391.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..408
                     /product="tumor necrosis factor receptor superfamily
                     member 19"
                     /calculated_mol_wt=44760
     Region          32..148
                     /region_name="TNFRSF19"
                     /note="Tumor necrosis factor receptor superfamily member
                     19 (TNFRSF19), also known as TROY; cd13418"
                     /db_xref="CDD:276923"
     Region          33..71
                     /region_name="CRD1"
                     /note="CRD1 [structural motif]"
                     /db_xref="CDD:276923"
     Region          74..113
                     /region_name="CRD2"
                     /note="CRD2 [structural motif]"
                     /db_xref="CDD:276923"
     Region          116..148
                     /region_name="CRD3"
                     /note="CRD3 [structural motif]"
                     /db_xref="CDD:276923"
     CDS             1..408
                     /gene="TNFRSF19"
                     /coded_by="XM_054080391.1:284..1510"
                     /db_xref="GeneID:104064152"
ORIGIN      
        1 mvakglqred klkmliilla yllnrvicet gdcreqefrd hngncilcrq cgpgmelske
       61 cgfgygedaq cmtcrpnrfk edwgfqkckp cldcalvnrf qkancsatsn alcgdclpgf
      121 yrktklggfq dmecvpcgdp pppyephctt kvnlvkipst assprdtala avicsalatv
      181 llallilcvi yckrqfmekk pswslrsqdi hyngselscf drprlseydh rtccqcqrst
      241 sqtcgpvhli pslccdetcs mehsshscaf hsqttlnera dsvgemipaf lgslshsacg
      301 disdawplmq nsaccdsisf sesyseradg sakscspete ktasiesdnn qelnevlisa
      361 ntldgniaes feiskhrtct edsllqnsva aetqpktkhn gtandstd
//
LOCUS       XP_009567547             206 aa            linear   VRT 09-MAR-2023
DEFINITION  fibroblast growth factor 6 [Cuculus canorus].
ACCESSION   XP_009567547
VERSION     XP_009567547.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009569252.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567547.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..206
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..206
                     /product="fibroblast growth factor 6"
                     /calculated_mol_wt=22741
     Region          82..206
                     /region_name="beta-trefoil_FGF6"
                     /note="FGF domain, beta-trefoil fold, found in fibroblast
                     growth factor 6 (FGF6) and similar proteins; cd23318"
                     /db_xref="CDD:467004"
     CDS             1..206
                     /gene="FGF6"
                     /coded_by="XM_009569252.2:59..679"
                     /db_xref="GeneID:104066625"
ORIGIN      
        1 mataqrllit msceasihrt lpafillgfl agiasthpvv srtngtller gwqsllsrsi
       61 sgmsgeksdv nwesdyllgi krqrrlycnv gigfhlqilp dgrisgvhne nqyslfeist
      121 vergvvslfg vksalfiamn nkgklygtav fqdeckfket llpnnynaye snayqgayia
      181 lskhgrvkrg nkvspamtvt hflpri
//
LOCUS       XP_053936389             500 aa            linear   VRT 09-MAR-2023
DEFINITION  rab-3A-interacting protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053936389
VERSION     XP_053936389.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080414.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..500
                     /product="rab-3A-interacting protein isoform X1"
                     /calculated_mol_wt=54759
     Region          <147..266
                     /region_name="Cast"
                     /note="RIM-binding protein of the cytomatrix active zone;
                     pfam10174"
                     /db_xref="CDD:431111"
     Region          213..281
                     /region_name="Sec2p"
                     /note="GDP/GTP exchange factor Sec2p; pfam06428"
                     /db_xref="CDD:428938"
     Region          306..498
                     /region_name="Rab11BD_RAB3IP"
                     /note="Rab11 binding domain of Rab-3A-interacting protein
                     (RAB3IP); cd21068"
                     /db_xref="CDD:411032"
     Site            order(391..397,452,455..456,459,463,468..472)
                     /site_type="other"
                     /note="Rab11 binding site [polypeptide binding]"
                     /db_xref="CDD:411032"
     CDS             1..500
                     /gene="RAB3IP"
                     /coded_by="XM_054080414.1:24..1526"
                     /db_xref="GeneID:104063872"
ORIGIN      
        1 mrsaappsgp appalaagtr cgavalaglg rvsydeafim asdplegfhe vnlaspttpd
       61 llgvnepgtq eqttspsviy rphpsvvssa piqpnalsvs dlptqpvyss prqlncgeas
      121 gvsinvgdtv lcstsgpqsg sfnhnnsrke snnaereflq gatvadvaeg nedifgsstd
      181 slshlrspsv levrekgyer lkeelakaqr elelkdeece rlskvrdqlg qeleeltasl
      241 feeahkmvke anvkqataek qlkeaqgkid vlqaevaalk tlvlstspts ptkefqstgk
      301 tpfkkgharn kstssamggs hqdltmmqpi vkdckeadls lynefrswkd eptmdrtcpf
      361 ldkiyredif pcltfsksel asavleaven ntlsiepvgl qpvrfvkasa vecggpkkca
      421 lsgqsksckh riklgdsssy yyispfcryr itsvcnffty iryiqqgllk qqdvdqmfwe
      481 vmqlrremsl aklgyykeel
//
LOCUS       XP_053936398             468 aa            linear   VRT 09-MAR-2023
DEFINITION  rab-3A-interacting protein isoform X2 [Cuculus canorus].
ACCESSION   XP_053936398
VERSION     XP_053936398.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080423.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..468
                     /product="rab-3A-interacting protein isoform X2"
                     /calculated_mol_wt=50997
     Region          <176..>249
                     /region_name="ATG16"
                     /note="Autophagy protein 16 (ATG16); pfam08614"
                     /db_xref="CDD:462536"
     Region          274..466
                     /region_name="Rab11BD_RAB3IP"
                     /note="Rab11 binding domain of Rab-3A-interacting protein
                     (RAB3IP); cd21068"
                     /db_xref="CDD:411032"
     Site            order(359..365,420,423..424,427,431,436..440)
                     /site_type="other"
                     /note="Rab11 binding site [polypeptide binding]"
                     /db_xref="CDD:411032"
     CDS             1..468
                     /gene="RAB3IP"
                     /coded_by="XM_054080423.1:24..1430"
                     /db_xref="GeneID:104063872"
ORIGIN      
        1 mrsaappsgp appalaagtr cgavalaglg rvsydeafim asdplegfhe vnlaspttpd
       61 llgvnepgtq eqttspsviy rphpsvvssa piqpnalsvs dlptqpvyss prqlncgeas
      121 gvsinvgdtv lcstsgpqsg sfnhnnsrke snnaereflq gatvadvaeg nedifgsstd
      181 slshlrspsv levrekgyer lkeelakaqr eahkmvkean vkqataekql keaqgkidvl
      241 qaevaalktl vlstsptspt kefqstgktp fkkgharnks tssamggshq dltmmqpivk
      301 dckeadlsly nefrswkdep tmdrtcpfld kiyredifpc ltfskselas avleavennt
      361 lsiepvglqp vrfvkasave cggpkkcals gqsksckhri klgdsssyyy ispfcryrit
      421 svcnfftyir yiqqgllkqq dvdqmfwevm qlrremslak lgyykeel
//
LOCUS       XP_009555605             316 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 52B2 [Cuculus canorus].
ACCESSION   XP_009555605
VERSION     XP_009555605.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557310.2
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555605.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..316
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..316
                     /product="olfactory receptor 52B2"
                     /calculated_mol_wt=35395
     Region          28..299
                     /region_name="7tmA_OR52B-like"
                     /note="olfactory receptor subfamily 52B and related
                     proteins, member of the class A family of
                     seven-transmembrane G protein-coupled receptors; cd15221"
                     /db_xref="CDD:320349"
     Region          28..54
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320349"
     Region          61..88
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320349"
     Site            order(83,86..87,99..104,106..107,110,155,157..161,197,
                     200..202,204..206,208..209,254,257..258,260..261,264,
                     272..273,275..277,280,283..284)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320349"
     Region          99..129
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320349"
     Region          142..163
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320349"
     Region          197..227
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320349"
     Region          234..264
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320349"
     Region          273..298
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320349"
     CDS             1..316
                     /gene="LOC104056097"
                     /coded_by="XM_009557310.2:1..951"
                     /db_xref="GeneID:104056097"
ORIGIN      
        1 meainetslh ptsflllgmv gledlhpwls ipfclvyiva llgnfilifv ivteqslhnp
       61 mclflamlav adlmlssstv pkalsifwsl skeisfhacl tqmffthvsf iaestillam
      121 afdryvaicn plrystiftp svvaktglaa marsfcvmfp tifllwrlpy cghhimphty
      181 cehmgiarla cadisvniwy gfattllspg vdvvfigisy vlilraifrl sskdaqlkai
      241 gtcsshacvi smfytpalfs ffthrfghnv phhihillan vyvllppmln piiytmkhkl
      301 lrekvtqivf rtgqaw
//
LOCUS       XP_053936418             757 aa            linear   VRT 09-MAR-2023
DEFINITION  FYVE, RhoGEF and PH domain-containing protein 4 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053936418
VERSION     XP_053936418.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080443.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..757
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..757
                     /product="FYVE, RhoGEF and PH domain-containing protein 4
                     isoform X1"
                     /calculated_mol_wt=85921
     Region          202..386
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(208,212,309,337..338,341..342,344..345,348..349,
                     352..353,356,382,386)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          418..511
                     /region_name="PH1_FDG4"
                     /note="FYVE, RhoGEF and PH domain containing/faciogenital
                     dysplasia proteins 4, N-terminal Pleckstrin homology (PH)
                     domain; cd15791"
                     /db_xref="CDD:275434"
     Region          550..614
                     /region_name="FYVE_FGD1_2_4"
                     /note="FYVE domain found in FYVE, RhoGEF and PH
                     domain-containing protein facio-genital dysplasia FGD1,
                     FGD2, FGD4; cd15741"
                     /db_xref="CDD:277280"
     Site            order(552,555,574..579,581..582,605..607)
                     /site_type="other"
                     /note="putative phosphatidylinositol 3-phosphate binding
                     site [chemical binding]"
                     /db_xref="CDD:277280"
     Region          633..735
                     /region_name="PH2_FGD1-4"
                     /note="FYVE, RhoGEF and PH domain containing/faciogenital
                     dysplasia proteins pleckstrin homology (PH) domain,
                     C-terminus; cd13236"
                     /db_xref="CDD:270056"
     CDS             1..757
                     /gene="FGD4"
                     /coded_by="XM_054080443.1:255..2528"
                     /db_xref="GeneID:104056347"
ORIGIN      
        1 meeetptpvs gvakeksskv sdlinrfegg sfsplnpsdl kkdssllhis ksqgrygstp
       61 ppqpklpcqh plqnqgnsnt dktqvaqlht angvvaqdqt ededrslsdr gstvstpvpd
      121 nainssling erestsresl qsetacegqm lnsccrspss dtlllsenet latnanvkee
      181 pneeiskqdq pvetketdeq krhkiasell qtekayvsrl dlldgvfysr lleeanrgsf
      241 paevinkifs nissinafhs kfllpelekr mqewtttpri gdilqklapf lkmygeyvkn
      301 fdnamelvkt wterspqfkf ivqdiqkekv cgnltlqhhm lepvqripry emllkdylrk
      361 lpqdsldwkd aeksleiist aashsnsair kmenlkklle iyemlgeeed ivnpsnelik
      421 egqilklaar ntsaqerylf lfnnmllycv pkfslvgskf svrtrvgidg mkikethnee
      481 yphtfqvsgk ertlelqass eqdkeewika lqntieafqq rnetfrnaia keyedlpvev
      541 snaelgkrap rwirdnevtm cmkckepfna ltrrrhhcra cghvvcwkcs dykahleydg
      601 nklnkvckdc yhviigctds eekkkkgile iesaevsgns vicsflqyme kskpwqkawc
      661 vipkqealvl ymygapqdvk alatipllgy tvddtprsad lphsfkltqs ksvhsfaadn
      721 eelkqkwlkv ihlavkgetp ecqnelqvnl eeqpess
//
LOCUS       XP_053936426             509 aa            linear   VRT 09-MAR-2023
DEFINITION  FYVE, RhoGEF and PH domain-containing protein 4 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053936426
VERSION     XP_053936426.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080451.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..509
                     /product="FYVE, RhoGEF and PH domain-containing protein 4
                     isoform X2"
                     /calculated_mol_wt=58751
     Region          <21..138
                     /region_name="RhoGEF"
                     /note="RhoGEF domain; pfam00621"
                     /db_xref="CDD:459876"
     Region          170..263
                     /region_name="PH1_FDG4"
                     /note="FYVE, RhoGEF and PH domain containing/faciogenital
                     dysplasia proteins 4, N-terminal Pleckstrin homology (PH)
                     domain; cd15791"
                     /db_xref="CDD:275434"
     Region          302..366
                     /region_name="FYVE_FGD1_2_4"
                     /note="FYVE domain found in FYVE, RhoGEF and PH
                     domain-containing protein facio-genital dysplasia FGD1,
                     FGD2, FGD4; cd15741"
                     /db_xref="CDD:277280"
     Site            order(304,307,326..331,333..334,357..359)
                     /site_type="other"
                     /note="putative phosphatidylinositol 3-phosphate binding
                     site [chemical binding]"
                     /db_xref="CDD:277280"
     Region          385..487
                     /region_name="PH2_FGD1-4"
                     /note="FYVE, RhoGEF and PH domain containing/faciogenital
                     dysplasia proteins pleckstrin homology (PH) domain,
                     C-terminus; cd13236"
                     /db_xref="CDD:270056"
     CDS             1..509
                     /gene="FGD4"
                     /coded_by="XM_054080451.1:182..1711"
                     /db_xref="GeneID:104056347"
ORIGIN      
        1 mpstvnsyfq nlrkecknds tlllyrtttp rigdilqkla pflkmygeyv knfdnamelv
       61 ktwterspqf kfivqdiqke kvcgnltlqh hmlepvqrip ryemllkdyl rklpqdsldw
      121 kdaeksleii staashsnsa irkmenlkkl leiyemlgee edivnpsnel ikegqilkla
      181 arntsaqery lflfnnmlly cvpkfslvgs kfsvrtrvgi dgmkikethn eeyphtfqvs
      241 gkertlelqa sseqdkeewi kalqntieaf qqrnetfrna iakeyedlpv evsnaelgkr
      301 aprwirdnev tmcmkckepf naltrrrhhc racghvvcwk csdykahley dgnklnkvck
      361 dcyhviigct dseekkkkgi leiesaevsg nsvicsflqy mekskpwqka wcvipkqeal
      421 vlymygapqd vkalatipll gytvddtprs adlphsfklt qsksvhsfaa dneelkqkwl
      481 kvihlavkge tpecqnelqv nleeqpess
//
LOCUS       XP_053936435            1017 aa            linear   VRT 09-MAR-2023
DEFINITION  diacylglycerol kinase iota isoform X1 [Cuculus canorus].
ACCESSION   XP_053936435
VERSION     XP_053936435.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080460.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1017
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1017
                     /product="diacylglycerol kinase iota isoform X1"
                     /calculated_mol_wt=113699
     Region          96..168
                     /region_name="C1_DGKiota_rpt1"
                     /note="first protein kinase C conserved region 1 (C1
                     domain) found in diacylglycerol kinase iota (DAG kinase
                     iota) and similar proteins; cd20850"
                     /db_xref="CDD:410400"
     Region          177..251
                     /region_name="C1_DGKiota_rpt2"
                     /note="second protein kinase C conserved region 1 (C1
                     domain) found in diacylglycerol kinase iota (DAG kinase
                     iota) and similar proteins; cd20896"
                     /db_xref="CDD:410446"
     Region          337..458
                     /region_name="DAGKc"
                     /note="Diacylglycerol kinase catalytic domain (presumed);
                     smart00046"
                     /db_xref="CDD:214487"
     Region          485..642
                     /region_name="DAGKa"
                     /note="Diacylglycerol kinase accessory domain (presumed);
                     smart00045"
                     /db_xref="CDD:214486"
     Region          <881..1003
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(910,912,916..917,920..922,924..925,929,932,943,945,
                     948,952..953,956..958,960..961,965,968,977,979,981,
                     985..986,989..991,993..994,998)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          910..943
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          945..977
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..1017
                     /gene="DGKI"
                     /coded_by="XM_054080460.1:146..3199"
                     /db_xref="GeneID:104058949"
ORIGIN      
        1 mnppaaagge etgaaggcrg aegggeaaga agvpeepgls aadesleekl rsltfrkqvs
       61 yrkaisrsgl qhlapvhsln iavsngpvke praalewten avngehlwle tnvsgdlcyl
      121 geescqvkfs ksalrrkcaa ckivvhnacm eqlekinfrc kptfreggsr sprenfvrhh
      181 wvhrrrqegk ckqcgkgfqq kfsfhskeiv aiscswckla fhnkvtcfml hhieepcslg
      241 ahaavivppt wiikvkkpqv vsipgdepdw agdwspeget gvsypywegw qnslktstrr
      301 kkrtsfkrka skrgnednkg rpfvikpiss plmkpllvfv npksggnqgt kvlqmfmwyl
      361 nprqvfdlsq egprdalely rkvpnlrila cggdgtvgwi lsildelqls ppppvavlpl
      421 gtgndlartl nwgggytdep vskilchved gtivqldrwn lqvernpdlp qdeledgark
      481 lplnvfnnyf slgfdahvtl efhesreanp ekfnsrfrnk mfyagaaftd flqrssrdls
      541 khvkvvcdgt dltpkiqelk fqcivflnip rycagtmpwg npgdhrdfep qrhddgyiev
      601 igftmaslaa lqvgghgerl hqcrevtllt yksipmqvdg epcrlapsli rislrnqanm
      661 vqkskrrtsm pllndphsip drlrirvnri nlqeyeglhy dkeklreasi plgiivvrgd
      721 cdletcrmyi drlqedlqsv tsttqrvhyq dqessfprvl svqrlsprwc fldatsadrf
      781 yridrsqehl hfvteisqde ifildpevvm sqqvgtppgm pdlvveqasg isdrwnpaar
      841 krmlsdsglg kisphyevpd kqkdasqthm lqspassedq allqaviagd llkfiecckk
      901 ganlliqgpd hcsllhhaak tghgeivkyi lehgpselld mtdsetgeta lhkaacqrhr
      961 avcqllvdag aslrktdskg ktprdraqqa gdpdlasyle srqnyqmvsh edletav
//
LOCUS       XP_053936442            1012 aa            linear   VRT 09-MAR-2023
DEFINITION  diacylglycerol kinase iota isoform X2 [Cuculus canorus].
ACCESSION   XP_053936442
VERSION     XP_053936442.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080467.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1012
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1012
                     /product="diacylglycerol kinase iota isoform X2"
                     /calculated_mol_wt=113118
     Region          96..168
                     /region_name="C1_DGKiota_rpt1"
                     /note="first protein kinase C conserved region 1 (C1
                     domain) found in diacylglycerol kinase iota (DAG kinase
                     iota) and similar proteins; cd20850"
                     /db_xref="CDD:410400"
     Region          177..251
                     /region_name="C1_DGKiota_rpt2"
                     /note="second protein kinase C conserved region 1 (C1
                     domain) found in diacylglycerol kinase iota (DAG kinase
                     iota) and similar proteins; cd20896"
                     /db_xref="CDD:410446"
     Region          332..453
                     /region_name="DAGKc"
                     /note="Diacylglycerol kinase catalytic domain (presumed);
                     smart00046"
                     /db_xref="CDD:214487"
     Region          480..637
                     /region_name="DAGKa"
                     /note="Diacylglycerol kinase accessory domain (presumed);
                     smart00045"
                     /db_xref="CDD:214486"
     Region          <876..998
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(905,907,911..912,915..917,919..920,924,927,938,940,
                     943,947..948,951..953,955..956,960,963,972,974,976,
                     980..981,984..986,988..989,993)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          905..938
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          940..972
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..1012
                     /gene="DGKI"
                     /coded_by="XM_054080467.1:145..3183"
                     /db_xref="GeneID:104058949"
ORIGIN      
        1 mnppaaagge etgaaggcrg aegggeaaga agvpeepgls aadesleekl rsltfrkqvs
       61 yrkaisrsgl qhlapvhsln iavsngpvke praalewten avngehlwle tnvsgdlcyl
      121 geescqvkfs ksalrrkcaa ckivvhnacm eqlekinfrc kptfreggsr sprenfvrhh
      181 wvhrrrqegk ckqcgkgfqq kfsfhskeiv aiscswckla fhnkvtcfml hhieepcslg
      241 ahaavivppt wiikvvsipg depdwagdws pegetgvsyp ywegwqnslk tstrrkkrts
      301 fkrkaskrgn ednkgrpfvi kpissplmkp llvfvnpksg gnqgtkvlqm fmwylnprqv
      361 fdlsqegprd alelyrkvpn lrilacggdg tvgwilsild elqlsppppv avlplgtgnd
      421 lartlnwggg ytdepvskil chvedgtivq ldrwnlqver npdlpqdele dgarklplnv
      481 fnnyfslgfd ahvtlefhes reanpekfns rfrnkmfyag aaftdflqrs srdlskhvkv
      541 vcdgtdltpk iqelkfqciv flniprycag tmpwgnpgdh rdfepqrhdd gyievigftm
      601 aslaalqvgg hgerlhqcre vtlltyksip mqvdgepcrl apslirislr nqanmvqksk
      661 rrtsmpllnd phsipdrlri rvnrinlqey eglhydkekl reasiplgii vvrgdcdlet
      721 crmyidrlqe dlqsvtsttq rvhyqdqess fprvlsvqrl sprwcfldat sadrfyridr
      781 sqehlhfvte isqdeifild pevvmsqqvg tppgmpdlvv eqasgisdrw npaarkrmls
      841 dsglgkisph yevpdkqkda sqthmlqspa ssedqallqa viagdllkfi ecckkganll
      901 iqgpdhcsll hhaaktghge ivkyilehgp selldmtdse tgetalhkaa cqrhravcql
      961 lvdagaslrk tdskgktprd raqqagdpdl asylesrqny qmvshedlet av
//
LOCUS       XP_053936451             993 aa            linear   VRT 09-MAR-2023
DEFINITION  diacylglycerol kinase iota isoform X3 [Cuculus canorus].
ACCESSION   XP_053936451
VERSION     XP_053936451.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080476.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..993
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..993
                     /product="diacylglycerol kinase iota isoform X3"
                     /calculated_mol_wt=111334
     Region          96..168
                     /region_name="C1_DGKiota_rpt1"
                     /note="first protein kinase C conserved region 1 (C1
                     domain) found in diacylglycerol kinase iota (DAG kinase
                     iota) and similar proteins; cd20850"
                     /db_xref="CDD:410400"
     Region          177..251
                     /region_name="C1_DGKiota_rpt2"
                     /note="second protein kinase C conserved region 1 (C1
                     domain) found in diacylglycerol kinase iota (DAG kinase
                     iota) and similar proteins; cd20896"
                     /db_xref="CDD:410446"
     Region          337..458
                     /region_name="DAGKc"
                     /note="Diacylglycerol kinase catalytic domain (presumed);
                     smart00046"
                     /db_xref="CDD:214487"
     Region          485..642
                     /region_name="DAGKa"
                     /note="Diacylglycerol kinase accessory domain (presumed);
                     smart00045"
                     /db_xref="CDD:214486"
     Region          <881..>934
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          910..936
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..993
                     /gene="DGKI"
                     /coded_by="XM_054080476.1:146..3127"
                     /db_xref="GeneID:104058949"
ORIGIN      
        1 mnppaaagge etgaaggcrg aegggeaaga agvpeepgls aadesleekl rsltfrkqvs
       61 yrkaisrsgl qhlapvhsln iavsngpvke praalewten avngehlwle tnvsgdlcyl
      121 geescqvkfs ksalrrkcaa ckivvhnacm eqlekinfrc kptfreggsr sprenfvrhh
      181 wvhrrrqegk ckqcgkgfqq kfsfhskeiv aiscswckla fhnkvtcfml hhieepcslg
      241 ahaavivppt wiikvkkpqv vsipgdepdw agdwspeget gvsypywegw qnslktstrr
      301 kkrtsfkrka skrgnednkg rpfvikpiss plmkpllvfv npksggnqgt kvlqmfmwyl
      361 nprqvfdlsq egprdalely rkvpnlrila cggdgtvgwi lsildelqls ppppvavlpl
      421 gtgndlartl nwgggytdep vskilchved gtivqldrwn lqvernpdlp qdeledgark
      481 lplnvfnnyf slgfdahvtl efhesreanp ekfnsrfrnk mfyagaaftd flqrssrdls
      541 khvkvvcdgt dltpkiqelk fqcivflnip rycagtmpwg npgdhrdfep qrhddgyiev
      601 igftmaslaa lqvgghgerl hqcrevtllt yksipmqvdg epcrlapsli rislrnqanm
      661 vqkskrrtsm pllndphsip drlrirvnri nlqeyeglhy dkeklreasi plgiivvrgd
      721 cdletcrmyi drlqedlqsv tsttqrvhyq dqessfprvl svqrlsprwc fldatsadrf
      781 yridrsqehl hfvteisqde ifildpevvm sqqvgtppgm pdlvveqasg isdrwnpaar
      841 krmlsdsglg kisphyevpd kqkdasqthm lqspassedq allqaviagd llkfiecckk
      901 ganlliqgpd hcsllhhaak tghgeivkyi lehgpselld mtdsetlpte skdvmlrerv
      961 hkstsaskre prrnaasfsv fplhlihrkc tlv
//
LOCUS       XP_053936461             868 aa            linear   VRT 09-MAR-2023
DEFINITION  diacylglycerol kinase iota isoform X4 [Cuculus canorus].
ACCESSION   XP_053936461
VERSION     XP_053936461.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080486.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..868
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..868
                     /product="diacylglycerol kinase iota isoform X4"
                     /calculated_mol_wt=98188
     Region          <1..19
                     /region_name="C1"
                     /note="protein kinase C conserved region 1 (C1 domain)
                     superfamily; cl00040"
                     /db_xref="CDD:412127"
     Region          28..102
                     /region_name="C1_DGKiota_rpt2"
                     /note="second protein kinase C conserved region 1 (C1
                     domain) found in diacylglycerol kinase iota (DAG kinase
                     iota) and similar proteins; cd20896"
                     /db_xref="CDD:410446"
     Region          188..309
                     /region_name="DAGKc"
                     /note="Diacylglycerol kinase catalytic domain (presumed);
                     smart00046"
                     /db_xref="CDD:214487"
     Region          336..493
                     /region_name="DAGKa"
                     /note="Diacylglycerol kinase accessory domain (presumed);
                     smart00045"
                     /db_xref="CDD:214486"
     Region          <732..854
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(761,763,767..768,771..773,775..776,780,783,794,796,
                     799,803..804,807..809,811..812,816,819,828,830,832,
                     836..837,840..842,844..845,849)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          761..794
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          796..828
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..868
                     /gene="DGKI"
                     /coded_by="XM_054080486.1:283..2889"
                     /db_xref="GeneID:104058949"
ORIGIN      
        1 meqlekinfr ckptfreggs rsprenfvrh hwvhrrrqeg kckqcgkgfq qkfsfhskei
       61 vaiscswckl afhnkvtcfm lhhieepcsl gahaavivpp twiikvkkpq vvsipgdepd
      121 wagdwspege tgvsypyweg wqnslktstr rkkrtsfkrk askrgnednk grpfvikpis
      181 splmkpllvf vnpksggnqg tkvlqmfmwy lnprqvfdls qegprdalel yrkvpnlril
      241 acggdgtvgw ilsildelql sppppvavlp lgtgndlart lnwgggytde pvskilchve
      301 dgtivqldrw nlqvernpdl pqdeledgar klplnvfnny fslgfdahvt lefhesrean
      361 pekfnsrfrn kmfyagaaft dflqrssrdl skhvkvvcdg tdltpkiqel kfqcivflni
      421 prycagtmpw gnpgdhrdfe pqrhddgyie vigftmasla alqvgghger lhqcrevtll
      481 tyksipmqvd gepcrlapsl irislrnqan mvqkskrrts mpllndphsi pdrlrirvnr
      541 inlqeyeglh ydkeklreas iplgiivvrg dcdletcrmy idrlqedlqs vtsttqrvhy
      601 qdqessfprv lsvqrlsprw cfldatsadr fyridrsqeh lhfvteisqd eifildpevv
      661 msqqvgtppg mpdlvveqas gisdrwnpaa rkrmlsdsgl gkisphyevp dkqkdasqth
      721 mlqspassed qallqaviag dllkfiecck kganlliqgp dhcsllhhaa ktghgeivky
      781 ilehgpsell dmtdsetget alhkaacqrh ravcqllvda gaslrktdsk gktprdraqq
      841 agdpdlasyl esrqnyqmvs hedletav
//
LOCUS       XP_053936471             985 aa            linear   VRT 09-MAR-2023
DEFINITION  diacylglycerol kinase iota isoform X5 [Cuculus canorus].
ACCESSION   XP_053936471
VERSION     XP_053936471.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080496.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..985
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..985
                     /product="diacylglycerol kinase iota isoform X5"
                     /calculated_mol_wt=110120
     Region          96..168
                     /region_name="C1_DGKiota_rpt1"
                     /note="first protein kinase C conserved region 1 (C1
                     domain) found in diacylglycerol kinase iota (DAG kinase
                     iota) and similar proteins; cd20850"
                     /db_xref="CDD:410400"
     Region          177..251
                     /region_name="C1_DGKiota_rpt2"
                     /note="second protein kinase C conserved region 1 (C1
                     domain) found in diacylglycerol kinase iota (DAG kinase
                     iota) and similar proteins; cd20896"
                     /db_xref="CDD:410446"
     Region          305..426
                     /region_name="DAGKc"
                     /note="Diacylglycerol kinase catalytic domain (presumed);
                     smart00046"
                     /db_xref="CDD:214487"
     Region          453..610
                     /region_name="DAGKa"
                     /note="Diacylglycerol kinase accessory domain (presumed);
                     smart00045"
                     /db_xref="CDD:214486"
     Region          <849..971
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(878,880,884..885,888..890,892..893,897,900,911,913,
                     916,920..921,924..926,928..929,933,936,945,947,949,
                     953..954,957..959,961..962,966)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          878..911
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          913..945
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..985
                     /gene="DGKI"
                     /coded_by="XM_054080496.1:146..3103"
                     /db_xref="GeneID:104058949"
ORIGIN      
        1 mnppaaagge etgaaggcrg aegggeaaga agvpeepgls aadesleekl rsltfrkqvs
       61 yrkaisrsgl qhlapvhsln iavsngpvke praalewten avngehlwle tnvsgdlcyl
      121 geescqvkfs ksalrrkcaa ckivvhnacm eqlekinfrc kptfreggsr sprenfvrhh
      181 wvhrrrqegk ckqcgkgfqq kfsfhskeiv aiscswckla fhnkvtcfml hhieepcslg
      241 ahaavivppt wiikvkkpqn slktstrrkk rtsfkrkask rgnednkgrp fvikpisspl
      301 mkpllvfvnp ksggnqgtkv lqmfmwylnp rqvfdlsqeg prdalelyrk vpnlrilacg
      361 gdgtvgwils ildelqlspp ppvavlplgt gndlartlnw gggytdepvs kilchvedgt
      421 ivqldrwnlq vernpdlpqd eledgarklp lnvfnnyfsl gfdahvtlef hesreanpek
      481 fnsrfrnkmf yagaaftdfl qrssrdlskh vkvvcdgtdl tpkiqelkfq civflnipry
      541 cagtmpwgnp gdhrdfepqr hddgyievig ftmaslaalq vgghgerlhq crevtlltyk
      601 sipmqvdgep crlapsliri slrnqanmvq kskrrtsmpl lndphsipdr lrirvnrinl
      661 qeyeglhydk eklreasipl giivvrgdcd letcrmyidr lqedlqsvts ttqrvhyqdq
      721 essfprvlsv qrlsprwcfl datsadrfyr idrsqehlhf vteisqdeif ildpevvmsq
      781 qvgtppgmpd lvveqasgis drwnpaarkr mlsdsglgki sphyevpdkq kdasqthmlq
      841 spassedqal lqaviagdll kfiecckkga nlliqgpdhc sllhhaaktg hgeivkyile
      901 hgpselldmt dsetgetalh kaacqrhrav cqllvdagas lrktdskgkt prdraqqagd
      961 pdlasylesr qnyqmvshed letav
//
LOCUS       XP_053936479             980 aa            linear   VRT 09-MAR-2023
DEFINITION  diacylglycerol kinase iota isoform X6 [Cuculus canorus].
ACCESSION   XP_053936479
VERSION     XP_053936479.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080504.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..980
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..980
                     /product="diacylglycerol kinase iota isoform X6"
                     /calculated_mol_wt=109539
     Region          96..168
                     /region_name="C1_DGKiota_rpt1"
                     /note="first protein kinase C conserved region 1 (C1
                     domain) found in diacylglycerol kinase iota (DAG kinase
                     iota) and similar proteins; cd20850"
                     /db_xref="CDD:410400"
     Region          177..251
                     /region_name="C1_DGKiota_rpt2"
                     /note="second protein kinase C conserved region 1 (C1
                     domain) found in diacylglycerol kinase iota (DAG kinase
                     iota) and similar proteins; cd20896"
                     /db_xref="CDD:410446"
     Region          300..421
                     /region_name="DAGKc"
                     /note="Diacylglycerol kinase catalytic domain (presumed);
                     smart00046"
                     /db_xref="CDD:214487"
     Region          448..605
                     /region_name="DAGKa"
                     /note="Diacylglycerol kinase accessory domain (presumed);
                     smart00045"
                     /db_xref="CDD:214486"
     Region          <844..966
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(873,875,879..880,883..885,887..888,892,895,906,908,
                     911,915..916,919..921,923..924,928,931,940,942,944,
                     948..949,952..954,956..957,961)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          873..906
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          908..940
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..980
                     /gene="DGKI"
                     /coded_by="XM_054080504.1:144..3086"
                     /db_xref="GeneID:104058949"
ORIGIN      
        1 mnppaaagge etgaaggcrg aegggeaaga agvpeepgls aadesleekl rsltfrkqvs
       61 yrkaisrsgl qhlapvhsln iavsngpvke praalewten avngehlwle tnvsgdlcyl
      121 geescqvkfs ksalrrkcaa ckivvhnacm eqlekinfrc kptfreggsr sprenfvrhh
      181 wvhrrrqegk ckqcgkgfqq kfsfhskeiv aiscswckla fhnkvtcfml hhieepcslg
      241 ahaavivppt wiiknslkts trrkkrtsfk rkaskrgned nkgrpfvikp issplmkpll
      301 vfvnpksggn qgtkvlqmfm wylnprqvfd lsqegprdal elyrkvpnlr ilacggdgtv
      361 gwilsildel qlsppppvav lplgtgndla rtlnwgggyt depvskilch vedgtivqld
      421 rwnlqvernp dlpqdeledg arklplnvfn nyfslgfdah vtlefhesre anpekfnsrf
      481 rnkmfyagaa ftdflqrssr dlskhvkvvc dgtdltpkiq elkfqcivfl niprycagtm
      541 pwgnpgdhrd fepqrhddgy ievigftmas laalqvgghg erlhqcrevt lltyksipmq
      601 vdgepcrlap slirislrnq anmvqkskrr tsmpllndph sipdrlrirv nrinlqeyeg
      661 lhydkeklre asiplgiivv rgdcdletcr myidrlqedl qsvtsttqrv hyqdqessfp
      721 rvlsvqrlsp rwcfldatsa drfyridrsq ehlhfvteis qdeifildpe vvmsqqvgtp
      781 pgmpdlvveq asgisdrwnp aarkrmlsds glgkisphye vpdkqkdasq thmlqspass
      841 edqallqavi agdllkfiec ckkganlliq gpdhcsllhh aaktghgeiv kyilehgpse
      901 lldmtdsetg etalhkaacq rhravcqllv dagaslrktd skgktprdra qqagdpdlas
      961 ylesrqnyqm vshedletav
//
LOCUS       XP_053936488             975 aa            linear   VRT 09-MAR-2023
DEFINITION  diacylglycerol kinase iota isoform X7 [Cuculus canorus].
ACCESSION   XP_053936488
VERSION     XP_053936488.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080513.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..975
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..975
                     /product="diacylglycerol kinase iota isoform X7"
                     /calculated_mol_wt=108923
     Region          96..168
                     /region_name="C1_DGKiota_rpt1"
                     /note="first protein kinase C conserved region 1 (C1
                     domain) found in diacylglycerol kinase iota (DAG kinase
                     iota) and similar proteins; cd20850"
                     /db_xref="CDD:410400"
     Region          177..251
                     /region_name="C1_DGKiota_rpt2"
                     /note="second protein kinase C conserved region 1 (C1
                     domain) found in diacylglycerol kinase iota (DAG kinase
                     iota) and similar proteins; cd20896"
                     /db_xref="CDD:410446"
     Region          337..458
                     /region_name="DAGKc"
                     /note="Diacylglycerol kinase catalytic domain (presumed);
                     smart00046"
                     /db_xref="CDD:214487"
     Region          485..642
                     /region_name="DAGKa"
                     /note="Diacylglycerol kinase accessory domain (presumed);
                     smart00045"
                     /db_xref="CDD:214486"
     Region          <839..961
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(868,870,874..875,878..880,882..883,887,890,901,903,
                     906,910..911,914..916,918..919,923,926,935,937,939,
                     943..944,947..949,951..952,956)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          868..901
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          903..935
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..975
                     /gene="DGKI"
                     /coded_by="XM_054080513.1:146..3073"
                     /db_xref="GeneID:104058949"
ORIGIN      
        1 mnppaaagge etgaaggcrg aegggeaaga agvpeepgls aadesleekl rsltfrkqvs
       61 yrkaisrsgl qhlapvhsln iavsngpvke praalewten avngehlwle tnvsgdlcyl
      121 geescqvkfs ksalrrkcaa ckivvhnacm eqlekinfrc kptfreggsr sprenfvrhh
      181 wvhrrrqegk ckqcgkgfqq kfsfhskeiv aiscswckla fhnkvtcfml hhieepcslg
      241 ahaavivppt wiikvkkpqv vsipgdepdw agdwspeget gvsypywegw qnslktstrr
      301 kkrtsfkrka skrgnednkg rpfvikpiss plmkpllvfv npksggnqgt kvlqmfmwyl
      361 nprqvfdlsq egprdalely rkvpnlrila cggdgtvgwi lsildelqls ppppvavlpl
      421 gtgndlartl nwgggytdep vskilchved gtivqldrwn lqvernpdlp qdeledgark
      481 lplnvfnnyf slgfdahvtl efhesreanp ekfnsrfrnk mfyagaaftd flqrssrdls
      541 khvkvvcdgt dltpkiqelk fqcivflnip rycagtmpwg npgdhrdfep qrhddgyiev
      601 igftmaslaa lqvgghgerl hqcrevtllt yksipmqvdg epcrlapsli rislrnqanm
      661 vqkskrrtsm pllndphsip drlrirvnri nlqeyeglhy dkeklreasi plgiivvrgd
      721 cdletcrmyi drlqedlqsv tsttqrvhyq dqessfprvl svqrlsprwc fldatsadrf
      781 yridrsqehl hfvteisqde ifildpevvm sqqvgtppgm pdlvveqasg spassedqal
      841 lqaviagdll kfiecckkga nlliqgpdhc sllhhaaktg hgeivkyile hgpselldmt
      901 dsetgetalh kaacqrhrav cqllvdagas lrktdskgkt prdraqqagd pdlasylesr
      961 qnyqmvshed letav
//
LOCUS       XP_053936497             943 aa            linear   VRT 09-MAR-2023
DEFINITION  diacylglycerol kinase iota isoform X8 [Cuculus canorus].
ACCESSION   XP_053936497
VERSION     XP_053936497.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080522.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..943
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..943
                     /product="diacylglycerol kinase iota isoform X8"
                     /calculated_mol_wt=105345
     Region          96..168
                     /region_name="C1_DGKiota_rpt1"
                     /note="first protein kinase C conserved region 1 (C1
                     domain) found in diacylglycerol kinase iota (DAG kinase
                     iota) and similar proteins; cd20850"
                     /db_xref="CDD:410400"
     Region          177..251
                     /region_name="C1_DGKiota_rpt2"
                     /note="second protein kinase C conserved region 1 (C1
                     domain) found in diacylglycerol kinase iota (DAG kinase
                     iota) and similar proteins; cd20896"
                     /db_xref="CDD:410446"
     Region          305..426
                     /region_name="DAGKc"
                     /note="Diacylglycerol kinase catalytic domain (presumed);
                     smart00046"
                     /db_xref="CDD:214487"
     Region          453..610
                     /region_name="DAGKa"
                     /note="Diacylglycerol kinase accessory domain (presumed);
                     smart00045"
                     /db_xref="CDD:214486"
     Region          <807..929
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(836,838,842..843,846..848,850..851,855,858,869,871,
                     874,878..879,882..884,886..887,891,894,903,905,907,
                     911..912,915..917,919..920,924)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          836..869
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          871..903
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..943
                     /gene="DGKI"
                     /coded_by="XM_054080522.1:146..2977"
                     /db_xref="GeneID:104058949"
ORIGIN      
        1 mnppaaagge etgaaggcrg aegggeaaga agvpeepgls aadesleekl rsltfrkqvs
       61 yrkaisrsgl qhlapvhsln iavsngpvke praalewten avngehlwle tnvsgdlcyl
      121 geescqvkfs ksalrrkcaa ckivvhnacm eqlekinfrc kptfreggsr sprenfvrhh
      181 wvhrrrqegk ckqcgkgfqq kfsfhskeiv aiscswckla fhnkvtcfml hhieepcslg
      241 ahaavivppt wiikvkkpqn slktstrrkk rtsfkrkask rgnednkgrp fvikpisspl
      301 mkpllvfvnp ksggnqgtkv lqmfmwylnp rqvfdlsqeg prdalelyrk vpnlrilacg
      361 gdgtvgwils ildelqlspp ppvavlplgt gndlartlnw gggytdepvs kilchvedgt
      421 ivqldrwnlq vernpdlpqd eledgarklp lnvfnnyfsl gfdahvtlef hesreanpek
      481 fnsrfrnkmf yagaaftdfl qrssrdlskh vkvvcdgtdl tpkiqelkfq civflnipry
      541 cagtmpwgnp gdhrdfepqr hddgyievig ftmaslaalq vgghgerlhq crevtlltyk
      601 sipmqvdgep crlapsliri slrnqanmvq kskrrtsmpl lndphsipdr lrirvnrinl
      661 qeyeglhydk eklreasipl giivvrgdcd letcrmyidr lqedlqsvts ttqrvhyqdq
      721 essfprvlsv qrlsprwcfl datsadrfyr idrsqehlhf vteisqdeif ildpevvmsq
      781 qvgtppgmpd lvveqasgsp assedqallq aviagdllkf iecckkganl liqgpdhcsl
      841 lhhaaktghg eivkyilehg pselldmtds etgetalhka acqrhravcq llvdagaslr
      901 ktdskgktpr draqqagdpd lasylesrqn yqmvshedle tav
//
LOCUS       XP_009556181             288 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium-transporting ATPase subunit beta isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009556181
VERSION     XP_009556181.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557886.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..288
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..288
                     /product="potassium-transporting ATPase subunit beta
                     isoform X1"
                     /calculated_mol_wt=33048
     Region          2..287
                     /region_name="Na_K-ATPase"
                     /note="Sodium / potassium ATPase beta chain; cl08255"
                     /db_xref="CDD:471796"
     CDS             1..288
                     /gene="ATP4B"
                     /coded_by="XM_009557886.2:1..867"
                     /db_xref="GeneID:104056622"
ORIGIN      
        1 matlnekktc sermenfrrf vwnpetklfm grtlinwvwi slyymafyvv msglfalsiy
       61 slmrtvnpye pdyqdqlksp gvtlrpdvyg drglqiyyni sdnktweglv ttlqtfltay
      121 tpaaqhlnin ctsdtyfiqd tfdgpnntkl sckftsdmlq ncsgitdptf gfpegkpcfi
      181 ikmnriikff pgngtaprvd ctyvgdesrp levdyypvng tfnlhyfpyy gikaqpsysn
      241 plvavkflni trneelrivc kiigagitfn nvhdpyegkv efklkied
//
LOCUS       XP_009556182             287 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium-transporting ATPase subunit beta isoform X2 [Cuculus
            canorus].
ACCESSION   XP_009556182
VERSION     XP_009556182.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557887.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..287
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..287
                     /product="potassium-transporting ATPase subunit beta
                     isoform X2"
                     /calculated_mol_wt=32949
     Region          2..286
                     /region_name="Na_K-ATPase"
                     /note="Sodium / potassium ATPase beta chain; cl08255"
                     /db_xref="CDD:471796"
     CDS             1..287
                     /gene="ATP4B"
                     /coded_by="XM_009557887.2:1..864"
                     /db_xref="GeneID:104056622"
ORIGIN      
        1 matlnekktc sermenfrrf vwnpetklfm grtlinwvwi slyymafyvv msglfalsiy
       61 slmrtvnpye pdyqdqlksp gvtlrpdvyg drglqiyyni sdnktweglv ttlqtfltay
      121 tpaaqhlnin ctsdtyfiqd tfdgpnntkl sckftsdmlq ncsgitdptf gfpegkpcfi
      181 ikmnriikff pgngtaprvd ctygdesrpl evdyypvngt fnlhyfpyyg ikaqpsysnp
      241 lvavkflnit rneelrivck iigagitfnn vhdpyegkve fklkied
//
LOCUS       XP_009567013             537 aa            linear   VRT 09-MAR-2023
DEFINITION  RCC1 and BTB domain-containing protein 1 [Cuculus canorus].
ACCESSION   XP_009567013
VERSION     XP_009567013.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568718.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567013.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..537
                     /product="RCC1 and BTB domain-containing protein 1"
                     /calculated_mol_wt=58959
     Region          19..317
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          356..472
                     /region_name="BTB_POZ_RCBTB1_CLLD7"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in RCC1 and BTB
                     domain-containing protein 1 (RCBTB1); cd18353"
                     /db_xref="CDD:349662"
     Region          472..537
                     /region_name="BACK_RCBTB1"
                     /note="BACK (BTB and C-terminal Kelch) domain found in
                     RCC1 and BTB domain-containing protein 1 (RCBTB1);
                     cd18528"
                     /db_xref="CDD:350603"
     CDS             1..537
                     /gene="RCBTB1"
                     /coded_by="XM_009568718.2:220..1833"
                     /db_xref="GeneID:104066148"
ORIGIN      
        1 mthssimvdv gkwpiftlls pqeiasirka cvfgtsanea iyithndevf vfglncsncl
       61 gtgdnqstiv pkklealcgk kisslsygsg phvvlctedg evyawghngy sqlgngttnq
      121 gitpiqvctn llikkvveva cgshhsmals fdgdlyawgy nncgqvgsgs tanqptprrv
      181 snclqgkmvv giacgqtssm avvnngevyg wgyngngqlg lgnnanqltp crvaalhgvc
      241 ilqiacgyah tlaltdegll yawgantygq lgtgnksnql spmqimmeke rvveiaachs
      301 ahtsaaktqs gqvymwgqcr gqsvifphlt hfactddvfa cfatpavmwr llsvehedfl
      361 tvaeslkkef dspetsdlkf rvdgkyihvh kavlkirceh frtmfqsywn edmkevieid
      421 qfsypvyraf leylytdsvd lppedaigll dlatsycenr lkklcqhiik rgitvenafs
      481 llsaavryda edleefcfkf cvnhltevtq ttafwqmdgp llkefiakas kcgafkn
//
LOCUS       XP_053936534             537 aa            linear   VRT 09-MAR-2023
DEFINITION  RCC1 and BTB domain-containing protein 1 [Cuculus canorus].
ACCESSION   XP_053936534
VERSION     XP_053936534.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080559.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..537
                     /product="RCC1 and BTB domain-containing protein 1"
                     /calculated_mol_wt=58959
     Region          19..317
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          356..472
                     /region_name="BTB_POZ_RCBTB1_CLLD7"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in RCC1 and BTB
                     domain-containing protein 1 (RCBTB1); cd18353"
                     /db_xref="CDD:349662"
     Region          472..537
                     /region_name="BACK_RCBTB1"
                     /note="BACK (BTB and C-terminal Kelch) domain found in
                     RCC1 and BTB domain-containing protein 1 (RCBTB1);
                     cd18528"
                     /db_xref="CDD:350603"
     CDS             1..537
                     /gene="RCBTB1"
                     /coded_by="XM_054080559.1:361..1974"
                     /db_xref="GeneID:104066148"
ORIGIN      
        1 mthssimvdv gkwpiftlls pqeiasirka cvfgtsanea iyithndevf vfglncsncl
       61 gtgdnqstiv pkklealcgk kisslsygsg phvvlctedg evyawghngy sqlgngttnq
      121 gitpiqvctn llikkvveva cgshhsmals fdgdlyawgy nncgqvgsgs tanqptprrv
      181 snclqgkmvv giacgqtssm avvnngevyg wgyngngqlg lgnnanqltp crvaalhgvc
      241 ilqiacgyah tlaltdegll yawgantygq lgtgnksnql spmqimmeke rvveiaachs
      301 ahtsaaktqs gqvymwgqcr gqsvifphlt hfactddvfa cfatpavmwr llsvehedfl
      361 tvaeslkkef dspetsdlkf rvdgkyihvh kavlkirceh frtmfqsywn edmkevieid
      421 qfsypvyraf leylytdsvd lppedaigll dlatsycenr lkklcqhiik rgitvenafs
      481 llsaavryda edleefcfkf cvnhltevtq ttafwqmdgp llkefiakas kcgafkn
//
LOCUS       XP_053936544             537 aa            linear   VRT 09-MAR-2023
DEFINITION  RCC1 and BTB domain-containing protein 1 [Cuculus canorus].
ACCESSION   XP_053936544
VERSION     XP_053936544.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080569.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..537
                     /product="RCC1 and BTB domain-containing protein 1"
                     /calculated_mol_wt=58959
     Region          19..317
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          356..472
                     /region_name="BTB_POZ_RCBTB1_CLLD7"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in RCC1 and BTB
                     domain-containing protein 1 (RCBTB1); cd18353"
                     /db_xref="CDD:349662"
     Region          472..537
                     /region_name="BACK_RCBTB1"
                     /note="BACK (BTB and C-terminal Kelch) domain found in
                     RCC1 and BTB domain-containing protein 1 (RCBTB1);
                     cd18528"
                     /db_xref="CDD:350603"
     CDS             1..537
                     /gene="RCBTB1"
                     /coded_by="XM_054080569.1:239..1852"
                     /db_xref="GeneID:104066148"
ORIGIN      
        1 mthssimvdv gkwpiftlls pqeiasirka cvfgtsanea iyithndevf vfglncsncl
       61 gtgdnqstiv pkklealcgk kisslsygsg phvvlctedg evyawghngy sqlgngttnq
      121 gitpiqvctn llikkvveva cgshhsmals fdgdlyawgy nncgqvgsgs tanqptprrv
      181 snclqgkmvv giacgqtssm avvnngevyg wgyngngqlg lgnnanqltp crvaalhgvc
      241 ilqiacgyah tlaltdegll yawgantygq lgtgnksnql spmqimmeke rvveiaachs
      301 ahtsaaktqs gqvymwgqcr gqsvifphlt hfactddvfa cfatpavmwr llsvehedfl
      361 tvaeslkkef dspetsdlkf rvdgkyihvh kavlkirceh frtmfqsywn edmkevieid
      421 qfsypvyraf leylytdsvd lppedaigll dlatsycenr lkklcqhiik rgitvenafs
      481 llsaavryda edleefcfkf cvnhltevtq ttafwqmdgp llkefiakas kcgafkn
//
LOCUS       XP_009554560              86 aa            linear   VRT 09-MAR-2023
DEFINITION  small nuclear ribonucleoprotein F [Cuculus canorus].
ACCESSION   XP_009554560
VERSION     XP_009554560.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556265.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..86
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..86
                     /product="small nuclear ribonucleoprotein F"
                     /calculated_mol_wt=9594
     Region          6..74
                     /region_name="Sm_F"
                     /note="Sm protein F; cd01722"
                     /db_xref="CDD:212469"
     Site            order(6..7,11,22..25,29,37,39..42,59..74)
                     /site_type="other"
                     /note="heptamer interface [polypeptide binding]"
                     /db_xref="CDD:212469"
     Site            order(19..25,27..39,41..45)
                     /site_type="other"
                     /note="Sm1 motif"
                     /db_xref="CDD:212469"
     Site            order(22,24..25,28,38..41,65..68)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:212469"
     Site            61..72
                     /site_type="other"
                     /note="Sm2 motif"
                     /db_xref="CDD:212469"
     CDS             1..86
                     /gene="SNRPF"
                     /coded_by="XM_009556265.2:136..396"
                     /db_xref="GeneID:104055171"
ORIGIN      
        1 mslplnpkpf lngltgkpvm vklkwgmeyk gylvsvdgym nmqlanteey idgalsghlg
       61 evlircnnvl yirgveeeee dgemre
//
LOCUS       XP_053936572             358 aa            linear   VRT 09-MAR-2023
DEFINITION  P2Y purinoceptor 2 [Cuculus canorus].
ACCESSION   XP_053936572
VERSION     XP_053936572.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080597.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..358
                     /product="P2Y purinoceptor 2"
                     /calculated_mol_wt=40775
     Region          39..321
                     /region_name="7tmA_P2Y2"
                     /note="P2Y purinoceptor 2, member of the class A family of
                     seven-transmembrane G protein-coupled receptors; cd15373"
                     /db_xref="CDD:320495"
     Region          39..66
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320495"
     Region          73..98
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320495"
     Site            order(94,97..98,111..116,118..119,122,167,169..173,187,
                     189..191,200,203..205,207..209,211..212,262,265..266,
                     268..269,272,288..289,291..293,296,299..300)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320495"
     Region          111..141
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320495"
     Region          153..175
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320495"
     Region          200..229
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320495"
     Region          242..272
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320495"
     Region          289..314
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320495"
     CDS             1..358
                     /gene="P2RY2"
                     /coded_by="XM_054080597.1:160..1236"
                     /db_xref="GeneID:104064117"
ORIGIN      
        1 manlttppaw trvinssvdp dgaedntykc ifdedfkyvl lpisygivcv vglflnllal
       61 ylfifriktw nasttymfnl avsdtlyvvs lpllvyyyam gdnwpfsvgl ckivrflfyt
      121 nlycsilfll cisihrflgi cfplkslqwg hvryarrvsv ivwvvtvvcq spvlffvtts
      181 vkrdtitchd tsskdlfgqf viyssvmlvl lfcipfliii icyclmarrl lqptrgmsrl
      241 srskkksvkm iiivlmvfiv cflpfhvtrt lyysfrswdl scqtlnainl aykvtrplas
      301 tnscldpily flagqrfmkf agskmpwktq nemalgivps shlgasndtd tlskdvks
//
LOCUS       XP_053936580             358 aa            linear   VRT 09-MAR-2023
DEFINITION  P2Y purinoceptor 2 [Cuculus canorus].
ACCESSION   XP_053936580
VERSION     XP_053936580.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080605.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..358
                     /product="P2Y purinoceptor 2"
                     /calculated_mol_wt=40775
     Region          39..321
                     /region_name="7tmA_P2Y2"
                     /note="P2Y purinoceptor 2, member of the class A family of
                     seven-transmembrane G protein-coupled receptors; cd15373"
                     /db_xref="CDD:320495"
     Region          39..66
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320495"
     Region          73..98
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320495"
     Site            order(94,97..98,111..116,118..119,122,167,169..173,187,
                     189..191,200,203..205,207..209,211..212,262,265..266,
                     268..269,272,288..289,291..293,296,299..300)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320495"
     Region          111..141
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320495"
     Region          153..175
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320495"
     Region          200..229
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320495"
     Region          242..272
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320495"
     Region          289..314
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320495"
     CDS             1..358
                     /gene="P2RY2"
                     /coded_by="XM_054080605.1:229..1305"
                     /db_xref="GeneID:104064117"
ORIGIN      
        1 manlttppaw trvinssvdp dgaedntykc ifdedfkyvl lpisygivcv vglflnllal
       61 ylfifriktw nasttymfnl avsdtlyvvs lpllvyyyam gdnwpfsvgl ckivrflfyt
      121 nlycsilfll cisihrflgi cfplkslqwg hvryarrvsv ivwvvtvvcq spvlffvtts
      181 vkrdtitchd tsskdlfgqf viyssvmlvl lfcipfliii icyclmarrl lqptrgmsrl
      241 srskkksvkm iiivlmvfiv cflpfhvtrt lyysfrswdl scqtlnainl aykvtrplas
      301 tnscldpily flagqrfmkf agskmpwktq nemalgivps shlgasndtd tlskdvks
//
LOCUS       XP_053936587             358 aa            linear   VRT 09-MAR-2023
DEFINITION  P2Y purinoceptor 2 [Cuculus canorus].
ACCESSION   XP_053936587
VERSION     XP_053936587.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080612.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..358
                     /product="P2Y purinoceptor 2"
                     /calculated_mol_wt=40775
     Region          39..321
                     /region_name="7tmA_P2Y2"
                     /note="P2Y purinoceptor 2, member of the class A family of
                     seven-transmembrane G protein-coupled receptors; cd15373"
                     /db_xref="CDD:320495"
     Region          39..66
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320495"
     Region          73..98
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320495"
     Site            order(94,97..98,111..116,118..119,122,167,169..173,187,
                     189..191,200,203..205,207..209,211..212,262,265..266,
                     268..269,272,288..289,291..293,296,299..300)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320495"
     Region          111..141
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320495"
     Region          153..175
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320495"
     Region          200..229
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320495"
     Region          242..272
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320495"
     Region          289..314
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320495"
     CDS             1..358
                     /gene="P2RY2"
                     /coded_by="XM_054080612.1:362..1438"
                     /db_xref="GeneID:104064117"
ORIGIN      
        1 manlttppaw trvinssvdp dgaedntykc ifdedfkyvl lpisygivcv vglflnllal
       61 ylfifriktw nasttymfnl avsdtlyvvs lpllvyyyam gdnwpfsvgl ckivrflfyt
      121 nlycsilfll cisihrflgi cfplkslqwg hvryarrvsv ivwvvtvvcq spvlffvtts
      181 vkrdtitchd tsskdlfgqf viyssvmlvl lfcipfliii icyclmarrl lqptrgmsrl
      241 srskkksvkm iiivlmvfiv cflpfhvtrt lyysfrswdl scqtlnainl aykvtrplas
      301 tnscldpily flagqrfmkf agskmpwktq nemalgivps shlgasndtd tlskdvks
//
LOCUS       XP_053936591             358 aa            linear   VRT 09-MAR-2023
DEFINITION  P2Y purinoceptor 2 [Cuculus canorus].
ACCESSION   XP_053936591
VERSION     XP_053936591.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080616.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..358
                     /product="P2Y purinoceptor 2"
                     /calculated_mol_wt=40775
     Region          39..321
                     /region_name="7tmA_P2Y2"
                     /note="P2Y purinoceptor 2, member of the class A family of
                     seven-transmembrane G protein-coupled receptors; cd15373"
                     /db_xref="CDD:320495"
     Region          39..66
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320495"
     Region          73..98
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320495"
     Site            order(94,97..98,111..116,118..119,122,167,169..173,187,
                     189..191,200,203..205,207..209,211..212,262,265..266,
                     268..269,272,288..289,291..293,296,299..300)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320495"
     Region          111..141
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320495"
     Region          153..175
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320495"
     Region          200..229
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320495"
     Region          242..272
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320495"
     Region          289..314
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320495"
     CDS             1..358
                     /gene="P2RY2"
                     /coded_by="XM_054080616.1:200..1276"
                     /db_xref="GeneID:104064117"
ORIGIN      
        1 manlttppaw trvinssvdp dgaedntykc ifdedfkyvl lpisygivcv vglflnllal
       61 ylfifriktw nasttymfnl avsdtlyvvs lpllvyyyam gdnwpfsvgl ckivrflfyt
      121 nlycsilfll cisihrflgi cfplkslqwg hvryarrvsv ivwvvtvvcq spvlffvtts
      181 vkrdtitchd tsskdlfgqf viyssvmlvl lfcipfliii icyclmarrl lqptrgmsrl
      241 srskkksvkm iiivlmvfiv cflpfhvtrt lyysfrswdl scqtlnainl aykvtrplas
      301 tnscldpily flagqrfmkf agskmpwktq nemalgivps shlgasndtd tlskdvks
//
LOCUS       XP_053936600             358 aa            linear   VRT 09-MAR-2023
DEFINITION  P2Y purinoceptor 2 [Cuculus canorus].
ACCESSION   XP_053936600
VERSION     XP_053936600.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080625.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..358
                     /product="P2Y purinoceptor 2"
                     /calculated_mol_wt=40775
     Region          39..321
                     /region_name="7tmA_P2Y2"
                     /note="P2Y purinoceptor 2, member of the class A family of
                     seven-transmembrane G protein-coupled receptors; cd15373"
                     /db_xref="CDD:320495"
     Region          39..66
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320495"
     Region          73..98
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320495"
     Site            order(94,97..98,111..116,118..119,122,167,169..173,187,
                     189..191,200,203..205,207..209,211..212,262,265..266,
                     268..269,272,288..289,291..293,296,299..300)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320495"
     Region          111..141
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320495"
     Region          153..175
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320495"
     Region          200..229
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320495"
     Region          242..272
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320495"
     Region          289..314
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320495"
     CDS             1..358
                     /gene="P2RY2"
                     /coded_by="XM_054080625.1:206..1282"
                     /db_xref="GeneID:104064117"
ORIGIN      
        1 manlttppaw trvinssvdp dgaedntykc ifdedfkyvl lpisygivcv vglflnllal
       61 ylfifriktw nasttymfnl avsdtlyvvs lpllvyyyam gdnwpfsvgl ckivrflfyt
      121 nlycsilfll cisihrflgi cfplkslqwg hvryarrvsv ivwvvtvvcq spvlffvtts
      181 vkrdtitchd tsskdlfgqf viyssvmlvl lfcipfliii icyclmarrl lqptrgmsrl
      241 srskkksvkm iiivlmvfiv cflpfhvtrt lyysfrswdl scqtlnainl aykvtrplas
      301 tnscldpily flagqrfmkf agskmpwktq nemalgivps shlgasndtd tlskdvks
//
LOCUS       XP_053936609             358 aa            linear   VRT 09-MAR-2023
DEFINITION  P2Y purinoceptor 2 [Cuculus canorus].
ACCESSION   XP_053936609
VERSION     XP_053936609.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080634.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..358
                     /product="P2Y purinoceptor 2"
                     /calculated_mol_wt=40775
     Region          39..321
                     /region_name="7tmA_P2Y2"
                     /note="P2Y purinoceptor 2, member of the class A family of
                     seven-transmembrane G protein-coupled receptors; cd15373"
                     /db_xref="CDD:320495"
     Region          39..66
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320495"
     Region          73..98
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320495"
     Site            order(94,97..98,111..116,118..119,122,167,169..173,187,
                     189..191,200,203..205,207..209,211..212,262,265..266,
                     268..269,272,288..289,291..293,296,299..300)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320495"
     Region          111..141
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320495"
     Region          153..175
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320495"
     Region          200..229
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320495"
     Region          242..272
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320495"
     Region          289..314
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320495"
     CDS             1..358
                     /gene="P2RY2"
                     /coded_by="XM_054080634.1:340..1416"
                     /db_xref="GeneID:104064117"
ORIGIN      
        1 manlttppaw trvinssvdp dgaedntykc ifdedfkyvl lpisygivcv vglflnllal
       61 ylfifriktw nasttymfnl avsdtlyvvs lpllvyyyam gdnwpfsvgl ckivrflfyt
      121 nlycsilfll cisihrflgi cfplkslqwg hvryarrvsv ivwvvtvvcq spvlffvtts
      181 vkrdtitchd tsskdlfgqf viyssvmlvl lfcipfliii icyclmarrl lqptrgmsrl
      241 srskkksvkm iiivlmvfiv cflpfhvtrt lyysfrswdl scqtlnainl aykvtrplas
      301 tnscldpily flagqrfmkf agskmpwktq nemalgivps shlgasndtd tlskdvks
//
LOCUS       XP_053936620             337 aa            linear   VRT 09-MAR-2023
DEFINITION  interferon gamma receptor 2 [Cuculus canorus].
ACCESSION   XP_053936620
VERSION     XP_053936620.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080645.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..337
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..337
                     /product="interferon gamma receptor 2"
                     /calculated_mol_wt=37687
     Region          24..117
                     /region_name="Tissue_fac"
                     /note="Tissue factor; pfam01108"
                     /db_xref="CDD:460067"
     Region          129..227
                     /region_name="Interfer-bind"
                     /note="Interferon-alpha/beta receptor, fibronectin type
                     III; pfam09294"
                     /db_xref="CDD:462746"
     CDS             1..337
                     /gene="IFNGR2"
                     /coded_by="XM_054080645.1:106..1119"
                     /db_xref="GeneID:104064789"
ORIGIN      
        1 mpareplral lllllllllg saraagaess phlpppkdvk vysynfhsll rwspvevdrg
       61 lvlytvhfkt gafnqwvdmn cthisqtecs fpwslkkrrw tvflrvrael gqvtsawvet
      121 defvaerdtt igppkvnsvt assdsllirv tppfgpeagd flqyhvsywe natsttkkem
      181 etsnalfkir nlkestlycf rvhvelmtrl ssqllgqqsa pecsrttise atragyiisv
      241 lllillflil vlvglfflwk hrktlkywsw pplqipshfe eylndpsmpg leglahhaed
      301 dpdalsvssc kdgsqacssg ldgqphshsi ssesdvt
//
LOCUS       XP_053936632             172 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 50B isoform X1 [Cuculus canorus].
ACCESSION   XP_053936632
VERSION     XP_053936632.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080657.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..172
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..172
                     /product="transmembrane protein 50B isoform X1"
                     /calculated_mol_wt=18996
     Region          9..144
                     /region_name="UPF0220"
                     /note="Uncharacterized protein family (UPF0220);
                     pfam05255"
                     /db_xref="CDD:428395"
     CDS             1..172
                     /gene="TMEM50B"
                     /coded_by="XM_054080657.1:216..734"
                     /db_xref="GeneID:104064758"
ORIGIN      
        1 magfldnfrw pececidwse rrnaiasvva gvlfftgwwi midaavvypr peqmnhafht
       61 cgvfstlaff minavsnaqv rgdsysdgcl grtgarvwlf igfmlmfgsl iasmwilfga
      121 yvtqntnvyp glavffqnal iffspqesvh slrapvspal safsefasle cg
//
LOCUS       XP_053936638             158 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 50B isoform X2 [Cuculus canorus].
ACCESSION   XP_053936638
VERSION     XP_053936638.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080663.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..158
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..158
                     /product="transmembrane protein 50B isoform X2"
                     /calculated_mol_wt=17792
     Region          9..157
                     /region_name="UPF0220"
                     /note="Uncharacterized protein family (UPF0220);
                     pfam05255"
                     /db_xref="CDD:428395"
     CDS             1..158
                     /gene="TMEM50B"
                     /coded_by="XM_054080663.1:215..691"
                     /db_xref="GeneID:104064758"
ORIGIN      
        1 magfldnfrw pececidwse rrnaiasvva gvlfftgwwi midaavvypr peqmnhafht
       61 cgvfstlaff minavsnaqv rgdsysdgcl grtgarvwlf igfmlmfgsl iasmwilfga
      121 yvtqntnvyp glavffqnal iffstliykf grteelwg
//
LOCUS       XP_009566739             192 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H5 [Cuculus canorus].
ACCESSION   XP_009566739
VERSION     XP_009566739.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568444.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566739.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..192
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..192
                     /product="histone H5"
                     /calculated_mol_wt=20779
     Region          27..95
                     /region_name="Linker_histone"
                     /note="linker histone H1 and H5 family; pfam00538"
                     /db_xref="CDD:459846"
     CDS             1..192
                     /gene="LOC104065912"
                     /coded_by="XM_009568444.2:139..717"
                     /db_xref="GeneID:104065912"
ORIGIN      
        1 mtespaaaps spakpkrarv arrpashpty sdmiaaaira eksrggssrq siqkyvkshy
       61 kvgqhadvqi rlairrllas gilkqtkgvg asgsfrlaka dkakkspark kkkaarrsts
      121 prkaarprka kspskkpksp arkarkksra spkkakkpkt vkakslkasr pkkakrskpr
      181 akssarkspk kk
//
LOCUS       XP_053936658             337 aa            linear   VRT 09-MAR-2023
DEFINITION  protein phosphatase methylesterase 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053936658
VERSION     XP_053936658.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080683.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..337
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..337
                     /product="protein phosphatase methylesterase 1 isoform X1"
                     /calculated_mol_wt=36900
     Region          13..321
                     /region_name="MenH"
                     /note="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase MenH and related
                     esterases, alpha/beta hydrolase fold [Coenzyme transport
                     and metabolism, General function prediction only];
                     COG0596"
                     /db_xref="CDD:440361"
     Region          221..>257
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     CDS             1..337
                     /gene="PPME1"
                     /coded_by="XM_054080683.1:230..1243"
                     /db_xref="GeneID:104064207"
ORIGIN      
        1 medvvvenet gkdtfriyks glegpvllll hggghsalsw avftsaiinr iqcrivaldl
       61 rghgetkvrn pedlsaetms kdvgnvveal ygdlpppiml ighsmggaia vhtavanlvp
      121 sllglcmidv vegtamdaln smqnflrsrp ktfksienai ewsvksgqir nlesarvsmv
      181 gqvkqcegaa specpkaive giieeeeede edeegggsvn krkkeddtet kkehlytwri
      241 elaktekywd gwfrglsnlf lscptpklll lagvdrldkd ltigqmqgkf qmqvlpqcgh
      301 avhedapdkv aeavatflir hrftepiggf qcvfpac
//
LOCUS       XP_053936663             388 aa            linear   VRT 09-MAR-2023
DEFINITION  protein phosphatase methylesterase 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053936663
VERSION     XP_053936663.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080688.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..388
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..388
                     /product="protein phosphatase methylesterase 1 isoform X2"
                     /calculated_mol_wt=42536
     Region          64..372
                     /region_name="MenH"
                     /note="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase MenH and related
                     esterases, alpha/beta hydrolase fold [Coenzyme transport
                     and metabolism, General function prediction only];
                     COG0596"
                     /db_xref="CDD:440361"
     Region          272..>308
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     CDS             1..388
                     /gene="PPME1"
                     /coded_by="XM_054080688.1:114..1280"
                     /db_xref="GeneID:104064207"
ORIGIN      
        1 msalekqlhl grlpprpplp sgggqsgskm rmgpgrkrdf spvlwsqyfe smedvvvene
       61 tgkdtfriyk sglegpvlll lhggghsals wavftsaiin riqcrivald lrghgetkvr
      121 npedlsaetm skdvgnvvea lygdlpppim lighsmggai avhtavanlv psllglcmid
      181 vvegtamdal nsmqnflrsr pktfksiena iewsvksgqi rnlesarvsm vgqvkqcega
      241 aspecpkaiv egiieeeeed eedeegggsv nkrkkeddte tkkehlytwr ielaktekyw
      301 dgwfrglsnl flscptpkll llagvdrldk dltigqmqgk fqmqvlpqcg havhedapdk
      361 vaeavatfli rhrftepigg fqcvfpac
//
LOCUS       XP_009558820             109 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 213 isoform X1 [Cuculus canorus].
ACCESSION   XP_009558820
VERSION     XP_009558820.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560525.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009558820.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..109
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..109
                     /product="transmembrane protein 213 isoform X1"
                     /calculated_mol_wt=12235
     Region          36..109
                     /region_name="TMEM213"
                     /note="TMEM213 family; pfam15192"
                     /db_xref="CDD:464555"
     CDS             1..109
                     /gene="TMEM213"
                     /coded_by="XM_009560525.2:177..506"
                     /db_xref="GeneID:104058935"
ORIGIN      
        1 mpsmkhfcfe pwaafvvlff invlwysysa aaedvsnvst ssmltteyep pclnvnfctq
       61 vavccptgmd dygwiaaavg wslwfltlil lcmdklmklr pdepkylva
//
LOCUS       XP_053936685             108 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 213 isoform X2 [Cuculus canorus].
ACCESSION   XP_053936685
VERSION     XP_053936685.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080710.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..108
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..108
                     /product="transmembrane protein 213 isoform X2"
                     /calculated_mol_wt=12164
     Region          35..108
                     /region_name="TMEM213"
                     /note="TMEM213 family; pfam15192"
                     /db_xref="CDD:464555"
     CDS             1..108
                     /gene="TMEM213"
                     /coded_by="XM_054080710.1:193..519"
                     /db_xref="GeneID:104058935"
ORIGIN      
        1 mpsmkhfcfe pwaafvvlff invlwysysa aedvsnvsts smltteyepp clnvnfctqv
       61 avccptgmdd ygwiaaavgw slwfltlill cmdklmklrp depkylva
//
LOCUS       XP_009563864             808 aa            linear   VRT 09-MAR-2023
DEFINITION  angiotensin-converting enzyme 2 [Cuculus canorus].
ACCESSION   XP_009563864
VERSION     XP_009563864.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565569.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009563864.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..808
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..808
                     /product="angiotensin-converting enzyme 2"
                     /calculated_mol_wt=92991
     Region          21..606
                     /region_name="Peptidase_M2"
                     /note="Angiotensin-converting enzyme; pfam01401"
                     /db_xref="CDD:460196"
     Region          617..746
                     /region_name="Collectrin"
                     /note="Renal amino acid transporter; pfam16959"
                     /db_xref="CDD:465322"
     CDS             1..808
                     /gene="ACE2"
                     /coded_by="XM_009565569.2:143..2569"
                     /db_xref="GeneID:104063399"
ORIGIN      
        1 mlvhlwllcg lsavvipqdv tqqaqmflee fnrraedisy esslasweyn tniteenakk
       61 mneasarwsa fyntassnas tfpltniqda ltrlqiqtlq drgssilspe kysrlntvln
      121 tmstiystgt vckisessec lvlepgldai maestdyher lwawegwrad vgrmmrplye
      181 eyvelkneva klnnysdygd ywranyeady peeykysrdq lvedvektfe qikplyqqlh
      241 ayvrhrleqv ygsklisstg clpahllgdm wgrfwtnlya ltvpypakpn idvtstmvek
      301 kwdamkifka aeaffasigl ynmtegfwen smlteptdnr kvvchptawd lgkndyrikm
      361 ctkvtmddfl tahhemghie ydmaysaqpy llrgganegf heavgeimsl saatpqhlks
      421 ldlleptfqe deeteinfll kqaltivgtm pftymlekwr wmvfrgeitk qewtkrwwem
      481 kreivgvvep iphdetycdp aalfhvandy sfiryytrti yqfqfqealc kaanhtgplh
      541 tcditnsraa gqnlrqllel grskpwteal esitgekymn aapllhyfep lytwlqknns
      601 gryigwktdw apyssdaikv rislksalgd qayewnenel flfrssvaya mrkyfaevkq
      661 qqvnfqatdi hvweqtqris fyvtvsmpgn isdivpkvdv enairmsrgr ineafrlddn
      721 tlefvgilpt latpyeppvt iwliifgvvi glvvigvvvl iftghrnrkk raresgseag
      781 nseavnpyde egksnmgfep sedtqtsl
//
LOCUS       XP_053936703             808 aa            linear   VRT 09-MAR-2023
DEFINITION  angiotensin-converting enzyme 2 [Cuculus canorus].
ACCESSION   XP_053936703
VERSION     XP_053936703.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080728.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..808
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..808
                     /product="angiotensin-converting enzyme 2"
                     /calculated_mol_wt=92991
     Region          21..606
                     /region_name="Peptidase_M2"
                     /note="Angiotensin-converting enzyme; pfam01401"
                     /db_xref="CDD:460196"
     Region          617..746
                     /region_name="Collectrin"
                     /note="Renal amino acid transporter; pfam16959"
                     /db_xref="CDD:465322"
     CDS             1..808
                     /gene="ACE2"
                     /coded_by="XM_054080728.1:110..2536"
                     /db_xref="GeneID:104063399"
ORIGIN      
        1 mlvhlwllcg lsavvipqdv tqqaqmflee fnrraedisy esslasweyn tniteenakk
       61 mneasarwsa fyntassnas tfpltniqda ltrlqiqtlq drgssilspe kysrlntvln
      121 tmstiystgt vckisessec lvlepgldai maestdyher lwawegwrad vgrmmrplye
      181 eyvelkneva klnnysdygd ywranyeady peeykysrdq lvedvektfe qikplyqqlh
      241 ayvrhrleqv ygsklisstg clpahllgdm wgrfwtnlya ltvpypakpn idvtstmvek
      301 kwdamkifka aeaffasigl ynmtegfwen smlteptdnr kvvchptawd lgkndyrikm
      361 ctkvtmddfl tahhemghie ydmaysaqpy llrgganegf heavgeimsl saatpqhlks
      421 ldlleptfqe deeteinfll kqaltivgtm pftymlekwr wmvfrgeitk qewtkrwwem
      481 kreivgvvep iphdetycdp aalfhvandy sfiryytrti yqfqfqealc kaanhtgplh
      541 tcditnsraa gqnlrqllel grskpwteal esitgekymn aapllhyfep lytwlqknns
      601 gryigwktdw apyssdaikv rislksalgd qayewnenel flfrssvaya mrkyfaevkq
      661 qqvnfqatdi hvweqtqris fyvtvsmpgn isdivpkvdv enairmsrgr ineafrlddn
      721 tlefvgilpt latpyeppvt iwliifgvvi glvvigvvvl iftghrnrkk raresgseag
      781 nseavnpyde egksnmgfep sedtqtsl
//
LOCUS       XP_053936714             181 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-18-binding protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053936714
VERSION     XP_053936714.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080739.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..181
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..181
                     /product="interleukin-18-binding protein isoform X1"
                     /calculated_mol_wt=19319
     Region          51..>83
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          56..60
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          71..75
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..181
                     /gene="IL18BP"
                     /coded_by="XM_054080739.1:172..717"
                     /db_xref="GeneID:104058239"
ORIGIN      
        1 mdapssartl gprtrlllsl lcwtlvscpt gamalqrpsi talrtpqrpp rlgesvnvsc
       61 eavsgfpeft llywlgngsf veklhpdgav regmvlvlgd wrvlgeevct avsaaileaa
      121 tellaallqt lsyeawlfvw lgtrcgggph llgthlmprc pcleqqgcsc lhpcscflaa
      181 p
//
LOCUS       XP_053936719             153 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-18-binding protein isoform X2 [Cuculus canorus].
ACCESSION   XP_053936719
VERSION     XP_053936719.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080744.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..153
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..153
                     /product="interleukin-18-binding protein isoform X2"
                     /calculated_mol_wt=16491
     Region          <53..134
                     /region_name="Pox_vIL-18BP"
                     /note="Orthopoxvirus interleukin 18 binding protein;
                     cl23951"
                     /db_xref="CDD:305108"
     CDS             1..153
                     /gene="IL18BP"
                     /coded_by="XM_054080744.1:172..633"
                     /db_xref="GeneID:104058239"
ORIGIN      
        1 mdapssartl gprtrlllsl lcwtlvscpt gamalqrpsi talrtpqrpp rlgesvnvsc
       61 eavsgfpeft llywlgngsf veklhpdgav regmvleepr gsvvalhrdl yfesfsardl
      121 htnftcvvls pfgvdtrevr wpppapatsg glg
//
LOCUS       XP_053936727             153 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-18-binding protein isoform X2 [Cuculus canorus].
ACCESSION   XP_053936727
VERSION     XP_053936727.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080752.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..153
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..153
                     /product="interleukin-18-binding protein isoform X2"
                     /calculated_mol_wt=16491
     Region          <53..134
                     /region_name="Pox_vIL-18BP"
                     /note="Orthopoxvirus interleukin 18 binding protein;
                     cl23951"
                     /db_xref="CDD:305108"
     CDS             1..153
                     /gene="IL18BP"
                     /coded_by="XM_054080752.1:172..633"
                     /db_xref="GeneID:104058239"
ORIGIN      
        1 mdapssartl gprtrlllsl lcwtlvscpt gamalqrpsi talrtpqrpp rlgesvnvsc
       61 eavsgfpeft llywlgngsf veklhpdgav regmvleepr gsvvalhrdl yfesfsardl
      121 htnftcvvls pfgvdtrevr wpppapatsg glg
//
LOCUS       XP_053936735             153 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-18-binding protein isoform X2 [Cuculus canorus].
ACCESSION   XP_053936735
VERSION     XP_053936735.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080760.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..153
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..153
                     /product="interleukin-18-binding protein isoform X2"
                     /calculated_mol_wt=16491
     Region          <53..134
                     /region_name="Pox_vIL-18BP"
                     /note="Orthopoxvirus interleukin 18 binding protein;
                     cl23951"
                     /db_xref="CDD:305108"
     CDS             1..153
                     /gene="IL18BP"
                     /coded_by="XM_054080760.1:172..633"
                     /db_xref="GeneID:104058239"
ORIGIN      
        1 mdapssartl gprtrlllsl lcwtlvscpt gamalqrpsi talrtpqrpp rlgesvnvsc
       61 eavsgfpeft llywlgngsf veklhpdgav regmvleepr gsvvalhrdl yfesfsardl
      121 htnftcvvls pfgvdtrevr wpppapatsg glg
//
LOCUS       XP_053936748             412 aa            linear   VRT 09-MAR-2023
DEFINITION  gastrin/cholecystokinin type B receptor [Cuculus canorus].
ACCESSION   XP_053936748
VERSION     XP_053936748.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080773.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..412
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..412
                     /product="gastrin/cholecystokinin type B receptor"
                     /calculated_mol_wt=44598
     Region          43..370
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          44..68
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          77..99
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          115..137
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          160..176
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          200..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          301..323
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          338..363
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..412
                     /gene="CCKBR"
                     /coded_by="XM_054080773.1:233..1471"
                     /db_xref="GeneID:104068129"
ORIGIN      
        1 mdprrpngsl lcpgngngtg ngcdipgrsg rggtgtgdld lmvrvllyav ifvlslcgna
       61 lvvavlllnr rlrtvtnsfl lslalsdlml alccmpftli pnlmgtfvfg evvcklmayl
      121 mgvsvsvstf slvaiaiery saickplqsr swqtrshacr viagtwllsa llmlpyavys
      181 ttrppgtqcs hhwpsdrvrq awyillllil ffipgvvmiv ayglisrely rgirfeldik
      241 gdpgaqrsvs aeppcddgdg cylqawrpgg salalralga qqdrarinss eaklvakrrv
      301 irmlvvivam fflcwlpvft antwkafspa aaqralsgap isfihllsyt sacanpliyc
      361 fmnrrfraaf lascdgcrra cprraphadp naaaaaslsk fsyttvsslg ap
//
LOCUS       XP_053936761             527 aa            linear   VRT 09-MAR-2023
DEFINITION  fibroin heavy chain-like [Cuculus canorus].
ACCESSION   XP_053936761
VERSION     XP_053936761.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080786.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 32% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..527
                     /product="fibroin heavy chain-like"
                     /calculated_mol_wt=52811
     CDS             1..527
                     /gene="LOC128853730"
                     /coded_by="XM_054080786.1:516..2099"
                     /db_xref="GeneID:128853730"
ORIGIN      
        1 mlssgsglgp rirywiqvlg tgsglgagir cwdrepgsgl gagigcwdle pgsglgagig
       61 cwdqesgsgl gagigcwdre pgsglgagig cwdlepgsgl gagigcwdqe sgsglgagig
      121 rwdrepgsgl garfririgs qdqvldsgsg irfwqpvqdq vpgsgsglrt gtgsrdqlwv
      181 lgsgsgpgpg irfrervlgs gvgshpvlgs gsgagtghrd rvwglgagir criwvlgsgl
      241 dpgiwfrdwi wglgagirfg irlgigcqiq glglgletrt ragerapgag agisagcqgw
      301 drepgwdlgi gsqdqvmelg ppgsgsgtgc qvwapglgtr igirirrwdw apglgsgssa
      361 gighqdqerq lgsgsgagig hqdqepesgs gsgagighqd wepesgsgss agighqdwep
      421 esgsgsalgl gtrigiriqr wdwapesgsg ssagighqdq epqsgsgssv gighqdwepe
      481 sgsgsglglr sgagigswds vpgqgagiec edrdpepgsg sgagigc
//
LOCUS       XP_053936769             494 aa            linear   VRT 09-MAR-2023
DEFINITION  sestrin-3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053936769
VERSION     XP_053936769.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080794.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..494
                     /product="sestrin-3 isoform X1"
                     /calculated_mol_wt=56915
     Region          44..492
                     /region_name="PA26"
                     /note="PA26 p53-induced protein (sestrin); pfam04636"
                     /db_xref="CDD:461375"
     CDS             1..494
                     /gene="SESN3"
                     /coded_by="XM_054080794.1:106..1590"
                     /db_xref="GeneID:104064083"
ORIGIN      
        1 mnrlgsgpvg saaaatgqyr vcgncrkvpr qekrvqvspp ltrgpsafip enevmqangl
       61 dertnllvee ystsgrldni tqvmsihsqy lesflrsqfy mlrmdgplpl pyrhyiaima
      121 aarhqcsyli nmhvdeflkt ggiaewlngl eyipqrlknl neinkllahr pwlitkehiq
      181 klvktgennw slpelvhavv llahyhalas fvfgsginpe rdpdtsngvr liavnnfcvc
      241 dlandnnien asltssnfgn vmvflqiads lselealmer mkrlqedked eeasqeemat
      301 rfekekkesl lvisgafdde ivstdvsryi edpgfgykdf arrgedhlpt fraqdytwen
      361 hgfslvnrly sdighlldek frmvynltyn tmathedvdt tmlrralfny vhcmygiryd
      421 dydygevnql lerslkvyik tvtcypertt krmydsywrq fkhsekvhvn lllmearmqa
      481 ellyalrait rhlt
//
LOCUS       XP_053936776             487 aa            linear   VRT 09-MAR-2023
DEFINITION  sestrin-3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053936776
VERSION     XP_053936776.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080801.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..487
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..487
                     /product="sestrin-3 isoform X2"
                     /calculated_mol_wt=56083
     Region          44..485
                     /region_name="PA26"
                     /note="PA26 p53-induced protein (sestrin); pfam04636"
                     /db_xref="CDD:461375"
     CDS             1..487
                     /gene="SESN3"
                     /coded_by="XM_054080801.1:106..1569"
                     /db_xref="GeneID:104064083"
ORIGIN      
        1 mnrlgsgpvg saaaatgqyr vcgncrkvpr qekrvqvspp ltrgpsafip enevmqangl
       61 dertnllvee ystsgrldni tqvmsihsqy lesflrsqfy mlrmdgplpl pyrhyiaima
      121 aarhqcsyli nmhvdeflkt ggiaewlngl eyipqrlknl neinkllahr pwlitkehiq
      181 klvktgennw slpelvhavv llahyhalas fvfgsginpe rdpdtsngvr liavnnfcvc
      241 dlandnnien asltssnfgi adslseleal mermkrlqed kedeeasqee matrfekekk
      301 esllvisgaf ddeivstdvs ryiedpgfgy kdfarrgedh lptfraqdyt wenhgfslvn
      361 rlysdighll dekfrmvynl tyntmathed vdttmlrral fnyvhcmygi ryddydygev
      421 nqllerslkv yiktvtcype rttkrmydsy wrqfkhsekv hvnlllmear mqaellyalr
      481 aitrhlt
//
LOCUS       XP_053936789             221 aa            linear   VRT 09-MAR-2023
DEFINITION  prolactin-like [Cuculus canorus].
ACCESSION   XP_053936789
VERSION     XP_053936789.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080814.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..221
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..221
                     /product="prolactin-like"
                     /calculated_mol_wt=24594
     Region          36..221
                     /region_name="growth_hormone_like"
                     /note="Somatotropin/prolactin hormone family; cl07831"
                     /db_xref="CDD:324147"
     Site            order(39,42..43,45..46,48,51..52,55,77,87,93..94,143,146,
                     149..150,153,195,198..199,202..203,205..207,209..210,213,
                     221)
                     /site_type="other"
                     /note="receptor binding interface [polypeptide binding]"
                     /db_xref="CDD:198434"
     CDS             1..221
                     /gene="LOC128853733"
                     /coded_by="XM_054080814.1:109..774"
                     /db_xref="GeneID:128853733"
ORIGIN      
        1 malaalrgpp rppaplallw lllcasghag grlltvadlf drvirhsgri hslstalyae
       61 lekrfpprdn elgkpsrkch tsgmptpngk eyaqkipree lthlilkllq awkeplshfn
      121 qhiehhqelp ddslskakqi snmvhelktg vekvtekmqs mgiisnslng messeaagls
      181 nsneanmmsd sdfihcfrrd snkvqsylki lkcrimpens c
//
LOCUS       XP_053936802             163 aa            linear   VRT 09-MAR-2023
DEFINITION  protein SMIM45 [Cuculus canorus].
ACCESSION   XP_053936802
VERSION     XP_053936802.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080827.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..163
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..163
                     /product="protein SMIM45"
                     /calculated_mol_wt=18043
     CDS             1..163
                     /gene="SMIM45"
                     /coded_by="XM_054080827.1:156..647"
                     /db_xref="GeneID:128853735"
ORIGIN      
        1 mlppalgcsr hpslppcach fsllscfprs gsllpgtawl gkepdssqph ssrcqreqph
       61 pialdqwkeg daaldlspca lvargswqgr saipamphfl dwfvpvylmi sililvgfga
      121 ciyyfepglq eahkwrtqrp iverdlrktl mirdnlafgv pev
//
LOCUS       XP_053936816             676 aa            linear   VRT 09-MAR-2023
DEFINITION  cyclic nucleotide-gated cation channel alpha-4 [Cuculus canorus].
ACCESSION   XP_053936816
VERSION     XP_053936816.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080841.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 15% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..676
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..676
                     /product="cyclic nucleotide-gated cation channel alpha-4"
                     /calculated_mol_wt=74081
     Region          33..257
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          331..447
                     /region_name="CAP_ED"
                     /note="effector domain of the CAP family of transcription
                     factors; members include CAP (or cAMP receptor protein
                     (CRP)), which binds cAMP, FNR (fumarate and nitrate
                     reduction), which uses an iron-sulfur cluster to sense
                     oxygen) and CooA, a heme containing CO...; cd00038"
                     /db_xref="CDD:237999"
     Site            order(397..398,413..415)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:237999"
     Site            order(435..437,441..443)
                     /site_type="other"
                     /note="flexible hinge region"
                     /db_xref="CDD:237999"
     Region          <512..651
                     /region_name="Herpes_LMP1"
                     /note="Herpesvirus latent membrane protein 1 (LMP1);
                     pfam05297"
                     /db_xref="CDD:283060"
     CDS             1..676
                     /gene="CNGA4"
                     /coded_by="XM_054080841.1:1..2031"
                     /db_xref="GeneID:128853737"
ORIGIN      
        1 mgfgdgvrcr ssgrwvleag gawharwmal aalpviyncl gltcraafpa vrqfgalwta
       61 ldalsdavyv adigvrmhtg fpesgaavps lgrvrrrylr srwfwwdaas vlpaellapa
      121 spwaranrcl raarlpeafa rwetraprpn alraakllly vfaaihglac ayfglsrrlg
      181 lgtdawvcpn gtafarprrq ylhslyfatl ilttvgdtpe prrheeflfl tvgyllavlg
      241 fatitgsvsa visninaada afypdaepvr rylrsqgvcg rlvrrvaswh hhlraqrklp
      301 aeravlrylp palqaevvas vhlpalrrvd lfrgwepgvl rqlvlrlrpq vfgpgefvcr
      361 rgdvgremyf iregrlavva ddgvthlavl gqglyfgeis linikgnpfg nrrtadivsl
      421 ghsdlfclak adlgevlaqf pgaraaleak grrlllragr wdagaeaaaa eaerraralr
      481 arlealrara araaaqlean afkmalrlqr leaprhprag garrgphehq ghpgvrdkgv
      541 qrppkmrdtg mqgppkmrdt gvrdagvqgp pkmrdaemrd tgvqgppkmr daemrdtgvq
      601 gppkmrdagl qglpkmrdag mrdtgvqgpp kmrdagmqgs pkmrdprnga gcfqgtvpav
      661 srehrepslg nnesrs
//
LOCUS       XP_053936830             532 aa            linear   VRT 09-MAR-2023
DEFINITION  amine oxidase [flavin-containing] A [Cuculus canorus].
ACCESSION   XP_053936830
VERSION     XP_053936830.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080855.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..532
                     /product="amine oxidase [flavin-containing] A"
                     /calculated_mol_wt=59596
     Region          25..467
                     /region_name="YobN"
                     /note="Monoamine oxidase [Amino acid transport and
                     metabolism]; COG1231"
                     /db_xref="CDD:440844"
     CDS             1..532
                     /gene="LOC104059252"
                     /coded_by="XM_054080855.1:109..1707"
                     /db_xref="GeneID:104059252"
ORIGIN      
        1 meaaqakrgs aavekydvvv vgggisglsa akllsesgin vvvlearnrv ggrtftiknd
       61 qvnyvdvgga yvgptqnril rltkelgiet ykvnveghmi hykggksrhl tgispstwnp
      121 ivyldynnfw rtvdklgkei ppeapwdaph aeewdkmtmr efinkicwtk avkdfatlfv
      181 nvnvtsephe vsalwflwyv rqcggtdrif sisnggqerk fkggagqise kikerlkgrv
      241 klekpvvcid qtgdnvivet lnhelyegky visaippilt tkihykpelp skrnrliqsl
      301 pmgcvikcmv yykeafwdrk gycgcfiied eespigitid dtkpdgsfpa imgfilarka
      361 vklahlskee rkkkiceafa kamgmkealh pvhyeeknws meqysggcyt ayfppgimys
      421 ygriirqpvd kiyfagteta tqwsgymega vqageraare ilhrmgrise seiwmpepes
      481 kdvpalpftt sfwernlpsv pgllcllsst vcftsvaavg lfaykkglli rn
//
LOCUS       XP_053936844             347 aa            linear   VRT 09-MAR-2023
DEFINITION  acrosin-like [Cuculus canorus].
ACCESSION   XP_053936844
VERSION     XP_053936844.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080869.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..347
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..347
                     /product="acrosin-like"
                     /calculated_mol_wt=37650
     Region          43..276
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            order(85,134,231)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(225,252,254)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..347
                     /gene="LOC128853739"
                     /coded_by="XM_054080869.1:911..1954"
                     /db_xref="GeneID:128853739"
ORIGIN      
        1 mnvlfvltll alfwpaqgsw dtcetcglrp sdyqnyssah aaggsdghpg awpwivsvqq
       61 ireagvvhic ggtlihpqwv ltaahcfvnt hnvlmwrvva gimhlahegp evqvryikri
      121 lghkgysnit qandialiel depfqcspyv qlacvpdfsl rvqelktcyv sgwgatmags
      181 pgmppvlles qvhllnthac nssgwyrgai hphnlcagyp qggidtcqgd sggplvcqdp
      241 hanhswlvgv tswgrgcara rrpgvytstq yfrewivaqm gmdlagaats tesakthflt
      301 isnpgegpqp eptqravsst cpfhldklkg vfaqlqkvlk flrggkd
//
LOCUS       XP_053936854             735 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor RFX4 isoform X1 [Cuculus canorus].
ACCESSION   XP_053936854
VERSION     XP_053936854.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080879.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..735
                     /product="transcription factor RFX4 isoform X1"
                     /calculated_mol_wt=83420
     Region          58..136
                     /region_name="RFX_DNA_binding"
                     /note="RFX DNA-binding domain; pfam02257"
                     /db_xref="CDD:460512"
     Region          513..>683
                     /region_name="Atrophin-1"
                     /note="Atrophin-1 family; pfam03154"
                     /db_xref="CDD:460830"
     CDS             1..735
                     /gene="RFX4"
                     /coded_by="XM_054080879.1:87..2294"
                     /db_xref="GeneID:104063472"
ORIGIN      
        1 mhcglleepd mdsteswier clnesenkry sshtslgnvs ndeneekenn raskphstpa
       61 tlqwleenye iaegvciprs alymhyldfc ekndtqpvna asfgkiirqq fpqlttrrlg
      121 trgqskyhyy giavkensqy ydvmyskkga awvnetgkke vtkqtvaysp rsklgtllpe
      181 fpnvkdlnlp aslpeekvst fimmyrthcq rildtviran fdevqsfllh fwqgmpphml
      241 pvlgsstvvn ivgvcdsily kaisgvlmpt vlqalpdslt qvirkfakql dewlkvalhd
      301 lpenlrnikf elsrrfsqil rrqtslnhlc qasrtvihsa ditfqmledw rnvdlnsitk
      361 qtlytmedsr eehrkliiql yqefdhllee qspiesyiew ldsmvdrcvv kvaakrqgsl
      421 kkvaqqfllm wscfgtrvir dmtlhsapsf gsfhlihlmf ddyvlylles lhcqeranel
      481 mramkgegst aeireeiils epapptpspv pfspaksats vevpsapspv snqspeyggi
      541 tvttgamqsy twsltytvtt aagspaensq qlpcmrsphv psssvthrip vyphreehgy
      601 tgsynygsys nqhphpmqsq ypslphdtai sgplhypayh rsssqypfns ptsrmepclm
      661 sstprlhptp vtprwpevpa anscytspsm hssrygnssd mytplttrrn seyehmqhfp
      721 gfayingeat tgwak
//
LOCUS       XP_053936863             734 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor RFX4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053936863
VERSION     XP_053936863.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080888.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..734
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..734
                     /product="transcription factor RFX4 isoform X2"
                     /calculated_mol_wt=83349
     Region          58..136
                     /region_name="RFX_DNA_binding"
                     /note="RFX DNA-binding domain; pfam02257"
                     /db_xref="CDD:460512"
     Region          512..>682
                     /region_name="Atrophin-1"
                     /note="Atrophin-1 family; pfam03154"
                     /db_xref="CDD:460830"
     CDS             1..734
                     /gene="RFX4"
                     /coded_by="XM_054080888.1:87..2291"
                     /db_xref="GeneID:104063472"
ORIGIN      
        1 mhcglleepd mdsteswier clnesenkry sshtslgnvs ndeneekenn raskphstpa
       61 tlqwleenye iaegvciprs alymhyldfc ekndtqpvna asfgkiirqq fpqlttrrlg
      121 trgqskyhyy giavkensqy ydvmyskkga awvnetgkke vtkqtvaysp rsklgtllpe
      181 fpnvkdlnlp aslpeekvst fimmyrthcq rildtviran fdevqsfllh fwqgmpphml
      241 pvlgsstvvn ivgvcdsily kaisgvlmpt vlqalpdslt qvirkfakql dewlkvalhd
      301 lpenlrnikf elsrrfsqil rrqtslnhlc qasrtvihsa ditfqmledw rnvdlnsitk
      361 qtlytmedsr eehrkliiql yqefdhllee qspiesyiew ldsmvdrcvv kvaakrqgsl
      421 kkvaqqfllm wscfgtrvir dmtlhsapsf gsfhlihlmf ddyvlylles lhcqeranel
      481 mramkgegst eireeiilse papptpspvp fspaksatsv evpsapspvs nqspeyggit
      541 vttgamqsyt wsltytvtta agspaensqq lpcmrsphvp sssvthripv yphreehgyt
      601 gsynygsysn qhphpmqsqy pslphdtais gplhypayhr sssqypfnsp tsrmepclms
      661 stprlhptpv tprwpevpaa nscytspsmh ssrygnssdm ytplttrrns eyehmqhfpg
      721 fayingeatt gwak
//
LOCUS       XP_053936873             432 aa            linear   VRT 09-MAR-2023
DEFINITION  septin-10 [Cuculus canorus].
ACCESSION   XP_053936873
VERSION     XP_053936873.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080898.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..432
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..432
                     /product="septin-10"
                     /calculated_mol_wt=49853
     Region          40..308
                     /region_name="CDC_Septin"
                     /note="CDC/Septin GTPase family; cd01850"
                     /db_xref="CDD:206649"
     Site            50..57
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206649"
     Site            order(52..58,102,105,185..186,188,240..241)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206649"
     Site            77..85
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206649"
     Site            79
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206649"
     Site            102..105
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206649"
     Site            order(104..141,143..151)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206649"
     Site            185..188
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206649"
     Site            240..242
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206649"
     Region          <285..427
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     CDS             1..432
                     /gene="SEPTIN10"
                     /coded_by="XM_054080898.1:124..1422"
                     /db_xref="GeneID:104056675"
ORIGIN      
        1 maaaraqrqp qndgyrtlsl sghvgfgslp dqlvkkstkq gfcfnilcig etgcgkstli
       61 nslfntnfdd pvsmhflpsv rlraqtyelq esnvllklti vntvgfgdqi nkedsyqpiv
      121 dyidaqfeay lqeelkikrs lfsyhdtrih vclyfisptg hslktldllt mksldskvni
      181 ipiigkadsi sktelqkfkn kimselasng iqiyhfptdd etvskintim nghlpfavvg
      241 steevkignk tvrarqypwg ivqvenenhc dfvklremli ctnmedlreq tharhyelyr
      301 rcrleemgfr digpenkpvs lqeayeakrh efylemqrke eemrqqfvqr vkekevmlke
      361 aeqqiqtkfe hrmlmhqevk lklerkkkal edeiamfiek kanaellqsq asvstpvvsl
      421 krdkdrknls ft
//
LOCUS       XP_053936881            1168 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine/tyrosine-interacting-like protein 2 [Cuculus
            canorus].
ACCESSION   XP_053936881
VERSION     XP_053936881.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080906.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1168
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1168
                     /product="serine/threonine/tyrosine-interacting-like
                     protein 2"
                     /calculated_mol_wt=131781
     Region          125..271
                     /region_name="PTP_DSP_cys"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; cl28904"
                     /db_xref="CDD:475123"
     Region          <851..1112
                     /region_name="PTZ00108"
                     /note="DNA topoisomerase 2-like protein; Provisional"
                     /db_xref="CDD:240271"
     CDS             1..1168
                     /gene="STYXL2"
                     /coded_by="XM_054080906.1:150..3656"
                     /db_xref="GeneID:104055979"
ORIGIN      
        1 masgrdsdse qvvpdeddeg pdvktvqahy lrspspsrys misdtdtesi fmepihlssa
       61 vaakqiinee lktkdtkvds mcprmlesaq qlmvedlynr vkekiddtsl fntpcvmdlq
      121 ralvkdrlet prdavdevwp nvfiaeksva vnksrlkrlg ithvlnaahg tgvytgpgfy
      181 nglniqylgi evddfpdmdi skhfrpaaef ldealltyrg kilvssemgi srsavlvaay
      241 lmiyhhmtil ealmtlrkkr aiypndgflk qlrelneqll eerelehtgd eevtpsqspv
      301 ihagtssrls gagdsksimg akahsitvee edtgsllgsf mssssagkts rvskhstlis
      361 eeeeeqlyee wrkkqglptr eprepgvnhg rrtspelldq egeqaeedve qrihdwrcrn
      421 ekyqmegppr eedgdsnmgg rpypagefsd vesvssfeir tlkqqleass fsstrrsrtg
      481 smssestwdm wnqrlleiek easqryhskn riagerqspe igrkerdvde esvfsdsssf
      541 ynfcqknkdk ltplerwkvk riqfgfhkkd lesssssaps paengsqagg egtegkslsd
      601 idltayqawk mkrqkkvgte skeefvefak sedsastkkk qrrvellers kkileesqsm
      661 cswetdsmms gsiplsafws sapsasgaed aasamsmqtn hsslsqtrss amamqpqmtn
      721 ippptlpvgp gdtismasiq nwianvvnet iaqkqneimm lsrpssamas svmsgnpgrh
      781 adddkvslls aqsgsslaas qlcqqdmhra esqsvlscnt svsartegts snmktmqtsk
      841 plyslfaddv dlkklrrkek emqmemrekm sdyqiekvir dnkrstlfkk kmtkgeenet
      901 eddresitns hrrpfqadld rtdtvfelss qpantgavks eietditkwl sglkaerepp
      961 pyydqsekar ekysrsskvr evdsetssyr fsrsqreeld scssyeskgd slrtvsriss
     1021 asakedkkmy kftrsrvset ssrgkspelh vfsrtpepff dsespepstq srvrsrhvea
     1081 ceeearsdts efgakrkftq sfskseedgt eetkveqsee rfasrqfsqs rrsmrkeeee
     1141 emdddaiiaa wrnrleetta klrrrree
//
LOCUS       XP_009555520             297 aa            linear   VRT 09-MAR-2023
DEFINITION  cell surface A33 antigen [Cuculus canorus].
ACCESSION   XP_009555520
VERSION     XP_009555520.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557225.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555520.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..297
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..297
                     /product="cell surface A33 antigen"
                     /calculated_mol_wt=32960
     Region          25..134
                     /region_name="V-set"
                     /note="Immunoglobulin V-set domain; pfam07686"
                     /db_xref="CDD:462230"
     Region          147..223
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          154..158
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          168..171
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          188..193
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          203..208
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..297
                     /gene="GPA33"
                     /coded_by="XM_009557225.2:92..985"
                     /db_xref="GeneID:104056019"
ORIGIN      
        1 mamkrlwlfi fsailvtaha ltvetpdkei kvargnnatl hchfksdasi fdgdvviwrk
       61 inslddavir yfdgltqygk gyenrirfsg dvnngdisii inevtmedng tytcnvrlrn
      121 dpprqtatma vfvlvapskp eckilgtaey gqtinltcvs hegspkpkyt wrsfnvqnep
      181 rvlqttegek itlknisadt sgfyictstn ivgtefcnmt vsvmppsmnl glyigiiaga
      241 vaaiaiisvl ayfcccrsdd knkayemaer edrhepstem parnqraeee qrsaeda
//
LOCUS       XP_053936893             424 aa            linear   VRT 09-MAR-2023
DEFINITION  glucoside xylosyltransferase 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053936893
VERSION     XP_053936893.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080918.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..424
                     /product="glucoside xylosyltransferase 1 isoform X1"
                     /calculated_mol_wt=49276
     Region          100..401
                     /region_name="GT8_like_2"
                     /note="GT8_like_2 represents a subfamily of GT8 with
                     unknown function; cd06430"
                     /db_xref="CDD:133052"
     Site            order(105..107,109..110,184,199,201..203,231,255..257,
                     301..302,327..328,348,350..351,354)
                     /site_type="active"
                     /note="putative ligand binding site [active]"
                     /db_xref="CDD:133052"
     Site            order(201,203,348)
                     /site_type="active"
                     /note="metal binding site [active]"
                     /db_xref="CDD:133052"
     CDS             1..424
                     /gene="GXYLT1"
                     /coded_by="XM_054080918.1:63..1337"
                     /db_xref="GeneID:104062399"
ORIGIN      
        1 mrrtarvall clgcglcsll ygcsqlalsp epgrggrerq arhpaapgar rqaaagrckn
       61 lslsfwnsyw mlpsdvcgmn cfweaafryn ymktrssekm hlavvacger leetvtmmrs
      121 aiifsikplq fhifaedqlh erfkdilddf pyegkvnytl ypitfptesa aewkklfkpc
      181 asqrlflpli lknvdsllyv dtdilflrpv ddiwsflgkf nstqiaamap eheeprigwy
      241 nrfarhpyyg vtginsgvml mnmtrirrky fkndmtsvrl qwgeilmpll kkyklnitwg
      301 dqdllnimff hnpeslyvfp cqwnyrpdhc iygsnckeae eegifilhgn rgvyhddkqp
      361 tfravyeaik nysfgdelvh sllqplelel rktmhtycgk vyevfikqlt ksirdlharr
      421 srgr
//
LOCUS       XP_053936898             393 aa            linear   VRT 09-MAR-2023
DEFINITION  glucoside xylosyltransferase 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053936898
VERSION     XP_053936898.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080923.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..393
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..393
                     /product="glucoside xylosyltransferase 1 isoform X2"
                     /calculated_mol_wt=45587
     Region          69..370
                     /region_name="GT8_like_2"
                     /note="GT8_like_2 represents a subfamily of GT8 with
                     unknown function; cd06430"
                     /db_xref="CDD:133052"
     Site            order(74..76,78..79,153,168,170..172,200,224..226,
                     270..271,296..297,317,319..320,323)
                     /site_type="active"
                     /note="putative ligand binding site [active]"
                     /db_xref="CDD:133052"
     Site            order(170,172,317)
                     /site_type="active"
                     /note="metal binding site [active]"
                     /db_xref="CDD:133052"
     CDS             1..393
                     /gene="GXYLT1"
                     /coded_by="XM_054080923.1:63..1244"
                     /db_xref="GeneID:104062399"
ORIGIN      
        1 mrrtarvall clgcglcsll ygcsqlalsp epgrggrerq arhpaapgar rqaaagryny
       61 mktrssekmh lavvacgerl eetvtmmrsa iifsikplqf hifaedqlhe rfkdilddfp
      121 yegkvnytly pitfptesaa ewkklfkpca sqrlflplil knvdsllyvd tdilflrpvd
      181 diwsflgkfn stqiaamape heeprigwyn rfarhpyygv tginsgvmlm nmtrirrkyf
      241 kndmtsvrlq wgeilmpllk kyklnitwgd qdllnimffh npeslyvfpc qwnyrpdhci
      301 ygsnckeaee egifilhgnr gvyhddkqpt fravyeaikn ysfgdelvhs llqplelelr
      361 ktmhtycgkv yevfikqltk sirdlharrs rgr
//
LOCUS       XP_053936906             343 aa            linear   VRT 09-MAR-2023
DEFINITION  glucoside xylosyltransferase 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053936906
VERSION     XP_053936906.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080931.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..343
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..343
                     /product="glucoside xylosyltransferase 1 isoform X3"
                     /calculated_mol_wt=40469
     Region          19..320
                     /region_name="GT8_like_2"
                     /note="GT8_like_2 represents a subfamily of GT8 with
                     unknown function; cd06430"
                     /db_xref="CDD:133052"
     Site            order(24..26,28..29,103,118,120..122,150,174..176,
                     220..221,246..247,267,269..270,273)
                     /site_type="active"
                     /note="putative ligand binding site [active]"
                     /db_xref="CDD:133052"
     Site            order(120,122,267)
                     /site_type="active"
                     /note="metal binding site [active]"
                     /db_xref="CDD:133052"
     CDS             1..343
                     /gene="GXYLT1"
                     /coded_by="XM_054080931.1:40..1071"
                     /db_xref="GeneID:104062399"
ORIGIN      
        1 mlmsayryny mktrssekmh lavvacgerl eetvtmmrsa iifsikplqf hifaedqlhe
       61 rfkdilddfp yegkvnytly pitfptesaa ewkklfkpca sqrlflplil knvdsllyvd
      121 tdilflrpvd diwsflgkfn stqiaamape heeprigwyn rfarhpyygv tginsgvmlm
      181 nmtrirrkyf kndmtsvrlq wgeilmpllk kyklnitwgd qdllnimffh npeslyvfpc
      241 qwnyrpdhci ygsnckeaee egifilhgnr gvyhddkqpt fravyeaikn ysfgdelvhs
      301 llqplelelr ktmhtycgkv yevfikqltk sirdlharrs rgr
//
LOCUS       XP_053936938             351 aa            linear   VRT 09-MAR-2023
DEFINITION  hsc70-interacting protein [Cuculus canorus].
ACCESSION   XP_053936938
VERSION     XP_053936938.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080963.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..351
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..351
                     /product="hsc70-interacting protein"
                     /calculated_mol_wt=39353
     Region          3..43
                     /region_name="Hip_N"
                     /note="N-terminal dimerization domain of the
                     Hsp70-interacting protein (Hip) and similar proteins;
                     cd14438"
                     /db_xref="CDD:271228"
     Site            order(5..6,8..10,12..13,16..17,23,27,30..31,33..35,37..43)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:271228"
     Site            order(120..121,123,147,150..151,154..155,157..158,181,
                     184..185,188..189,192)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          <123..262
                     /region_name="NlpI"
                     /note="Lipoprotein NlpI, contains TPR repeats [Cell
                     wall/membrane/envelope biogenesis]; COG4785"
                     /db_xref="CDD:443815"
     Region          145..175
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          180..208
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          213..238
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          298..343
                     /region_name="STI1"
                     /note="STI1 domain; pfam17830"
                     /db_xref="CDD:436075"
     CDS             1..351
                     /gene="ST13"
                     /coded_by="XM_054080963.1:104..1159"
                     /db_xref="GeneID:104055504"
ORIGIN      
        1 mdsrklselk afvrlckqnp allhteelaf lrewvesmgg tippapakaa teetskgkve
       61 eqpeepvksp eteseesdle idnegviepd nddpqemgde nvevtdemme qanekkieai
      121 nalsegelqk avdlftdaik lnpclailya krasvfvklq kpnaairdcd raikinpdsa
      181 qtykwrgkah rllghweeaa rdlalackld ydedasamlk evqpraqkia ehrrkyerkr
      241 eekeikerme rvkkareehe raqreeearr qaggaqfggf pggfpfgmpg gmpglneils
      301 dpevlvamqd pevmtafqdv vqnpanmsky qnnpkvmnli sklsaklgsk p
//
LOCUS       XP_009564290             519 aa            linear   VRT 09-MAR-2023
DEFINITION  putative GTP-binding protein 6 [Cuculus canorus].
ACCESSION   XP_009564290
VERSION     XP_009564290.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565995.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564290.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..519
                     /product="putative GTP-binding protein 6"
                     /calculated_mol_wt=57212
     Region          92..513
                     /region_name="HflX"
                     /note="50S ribosomal subunit-associated GTPase HflX
                     [Translation, ribosomal structure and biogenesis];
                     COG2262"
                     /db_xref="CDD:441863"
     CDS             1..519
                     /gene="GTPBP6"
                     /coded_by="XM_009565995.2:9..1568"
                     /db_xref="GeneID:104063738"
ORIGIN      
        1 mgpgrlcrsl llccrraaal gaagyrvral parplsasvr lrapgrgggg gsgyggagvg
       61 gdeededeee dededveell gpspvavgpg aqrvavvhpd vkwgpkkspl ttaelqiaea
      121 valvetlhnw tvldkiiipt knpdkkfifg kgnfqvltek ikklphvtav flnverissl
      181 tkkeledawg vkvfdrytvv lhifrcnaqt keaklqiala eipllrsnlk nevsrldqqr
      241 ggsryimgsg etfmetqnri lkekelkirn aleklkrkrs llrtqrrkre fptisvmgyt
      301 ncgkttlika ltgeaglqpr dqlfatldit ahagylpshm aviyvdtigf ltdlphnlve
      361 sfsatleeva ysdlivhvrd ithpetvlqk atvlsvlknl nlpshlldsm vevhnkvdli
      421 erykpteena laisalhglg leelkeeiek kiltatgkki ltvnvnlegp qlswlykeat
      481 vqevevmped gtakvkviig nsafgkyknl fpnskifmp
//
LOCUS       XP_009564261             336 aa            linear   VRT 09-MAR-2023
DEFINITION  PI-PLC X domain-containing protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_009564261
VERSION     XP_009564261.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565966.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564261.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..336
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..336
                     /product="PI-PLC X domain-containing protein 1 isoform X1"
                     /calculated_mol_wt=38570
     Region          22..312
                     /region_name="PI-PLCXD1c"
                     /note="Catalytic domain of phosphatidylinositol-specific
                     phospholipase C, X domain containing 1; cd08616"
                     /db_xref="CDD:176555"
     Site            order(40,101,117,148,197,215,217,297)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:176555"
     Site            order(40,117)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:176555"
     CDS             1..336
                     /gene="PLCXD1"
                     /coded_by="XM_009565966.2:184..1194"
                     /db_xref="GeneID:104063717"
ORIGIN      
        1 megllqtsih mchengqwms rlpeklwdip lynlalpgsh dtmtycldkn savsgneskv
       61 vkflnkcmpc ivhpiimkws ttqvltvteq leagvryldf riahksndps mnlyfvhmvy
      121 ttvtvqdilc kvlrwlethp qevvilacrn fdgltkklhr hliacikeif qcklcprnvv
      181 ptlrtmwqrg hqlivsyedd mevvehcelw paipywwgnk tatcsliqyl ehmkrmgrpe
      241 effvaginlt enlryilvhp fgslkkmtlr slpclkiwik qqypgpqkec iniiagdfig
      301 nddfvkdvie lntkinsslc cygkvggtnc vsfsas
//
LOCUS       XP_053936963             336 aa            linear   VRT 09-MAR-2023
DEFINITION  PI-PLC X domain-containing protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053936963
VERSION     XP_053936963.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080988.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..336
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..336
                     /product="PI-PLC X domain-containing protein 1 isoform X1"
                     /calculated_mol_wt=38570
     Region          22..312
                     /region_name="PI-PLCXD1c"
                     /note="Catalytic domain of phosphatidylinositol-specific
                     phospholipase C, X domain containing 1; cd08616"
                     /db_xref="CDD:176555"
     Site            order(40,101,117,148,197,215,217,297)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:176555"
     Site            order(40,117)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:176555"
     CDS             1..336
                     /gene="PLCXD1"
                     /coded_by="XM_054080988.1:161..1171"
                     /db_xref="GeneID:104063717"
ORIGIN      
        1 megllqtsih mchengqwms rlpeklwdip lynlalpgsh dtmtycldkn savsgneskv
       61 vkflnkcmpc ivhpiimkws ttqvltvteq leagvryldf riahksndps mnlyfvhmvy
      121 ttvtvqdilc kvlrwlethp qevvilacrn fdgltkklhr hliacikeif qcklcprnvv
      181 ptlrtmwqrg hqlivsyedd mevvehcelw paipywwgnk tatcsliqyl ehmkrmgrpe
      241 effvaginlt enlryilvhp fgslkkmtlr slpclkiwik qqypgpqkec iniiagdfig
      301 nddfvkdvie lntkinsslc cygkvggtnc vsfsas
//
LOCUS       XP_053936972             335 aa            linear   VRT 09-MAR-2023
DEFINITION  PI-PLC X domain-containing protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053936972
VERSION     XP_053936972.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054080997.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..335
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..335
                     /product="PI-PLC X domain-containing protein 1 isoform X2"
                     /calculated_mol_wt=38441
     Region          22..311
                     /region_name="PI-PLCXD1c"
                     /note="Catalytic domain of phosphatidylinositol-specific
                     phospholipase C, X domain containing 1; cd08616"
                     /db_xref="CDD:176555"
     Site            order(40,101,117,148,197,215,217,296)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:176555"
     Site            order(40,117)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:176555"
     CDS             1..335
                     /gene="PLCXD1"
                     /coded_by="XM_054080997.1:184..1191"
                     /db_xref="GeneID:104063717"
ORIGIN      
        1 megllqtsih mchengqwms rlpeklwdip lynlalpgsh dtmtycldkn savsgneskv
       61 vkflnkcmpc ivhpiimkws ttqvltvteq leagvryldf riahksndps mnlyfvhmvy
      121 ttvtvqdilc kvlrwlethp qevvilacrn fdgltkklhr hliacikeif qcklcprnvv
      181 ptlrtmwqrg hqlivsyedd mevvehcelw paipywwgnk tatcsliqyl ehmkrmgrpe
      241 ffvaginlte nlryilvhpf gslkkmtlrs lpclkiwikq qypgpqkeci niiagdfign
      301 ddfvkdviel ntkinsslcc ygkvggtncv sfsas
//
LOCUS       XP_053936987             406 aa            linear   VRT 09-MAR-2023
DEFINITION  pyruvate dehydrogenase kinase, isozyme 3 [Cuculus canorus].
ACCESSION   XP_053936987
VERSION     XP_053936987.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081012.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..406
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..406
                     /product="pyruvate dehydrogenase kinase, isozyme 3"
                     /calculated_mol_wt=46447
     Region          26..188
                     /region_name="BCDHK_Adom3"
                     /note="Mitochondrial branched-chain alpha-ketoacid
                     dehydrogenase kinase; pfam10436"
                     /db_xref="CDD:463093"
     Region          192..359
                     /region_name="HATPase_PDK-like"
                     /note="Histidine kinase-like ATPase domain of pyruvate
                     dehydrogenase kinase, branched-chain alpha-ketoacid
                     dehydrogenase kinase and related domains; cd16929"
                     /db_xref="CDD:340406"
     Site            order(221,273,275,277..280,282..284,288,293..295,344,
                     346..350,353,357)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:340406"
     Site            order(247,251..252,254..255,285,287,289,291..292,300,
                     322..329,345,347,351..352,354)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:340406"
     Site            order(301,328)
                     /site_type="other"
                     /note="ATP-lid"
                     /db_xref="CDD:340406"
     CDS             1..406
                     /gene="PDK3"
                     /coded_by="XM_054081012.1:244..1464"
                     /db_xref="GeneID:104059416"
ORIGIN      
        1 mrlcgvllks pvpkqiefys rfspsplsik qfldfgrdna cektsymflr kelpvrlant
       61 mrevnllpdn llnrpsvglv qswymqsfle lleyenkspe dphvlddfld vlikvrnrhn
      121 dvvptmaqgv ieykekygfd pfvssniqyf ldrfytnris frmlinqhtl lfggdinpah
      181 pkhigsidpn cnvaevvkda yetakmlceq yymvapdlev eefnakapnk piqvvyvpsh
      241 lfhmlfelfk nsmratvesh egkkegypsi ktlvtlgked lsikisdqgg gvplrkidrl
      301 fnymystapr pslepsravp lagfgyglpi srlyaryfqg dlklysmegv gsdaviylka
      361 lssesferlp vfnksawrhy kttpeaddws npsseprdas kykanr
//
LOCUS       XP_009556929             183 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related protein Rap-2a [Cuculus canorus].
ACCESSION   XP_009556929
VERSION     XP_009556929.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009558634.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..183
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..183
                     /product="ras-related protein Rap-2a"
                     /calculated_mol_wt=20522
     Region          3..165
                     /region_name="Rap2"
                     /note="Rap2 family GTPase consists of Rap2a, Rap2b, and
                     Rap2c; cd04176"
                     /db_xref="CDD:133376"
     Site            10..17
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:133376"
     Site            order(11..12,59..60)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133376"
     Site            order(13..18,28..31,116..117,119,146..147)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:133376"
     Site            order(17..18,32,34,40..41,54..55,57,59..60,148)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133376"
     Site            order(25,31,33,36..41)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:133376"
     Site            33..40
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:133376"
     Site            35
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:133376"
     Site            57..60
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:133376"
     Site            order(59..65,68..73,76..77)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:133376"
     Site            116..119
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:133376"
     Site            146..148
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:133376"
     CDS             1..183
                     /gene="LOC104057293"
                     /coded_by="XM_009558634.2:50..601"
                     /db_xref="GeneID:104057293"
ORIGIN      
        1 mreykvvvlg sggvgksalt vqfvtgtfie kydptiedfy rkeievdasp svleildtag
       61 teqfasmrdl yikngqgfil vyslvnqqsf qdirpmrdqi irvkryekvp vilvgnkvdl
      121 eserevslse gralaeewgc pfmetsaksk tmvdelfaei vrqmnyaaqp dkddpccsac
      181 niq
//
LOCUS       XP_009561320             291 aa            linear   VRT 09-MAR-2023
DEFINITION  glioma pathogenesis-related protein 1 [Cuculus canorus].
ACCESSION   XP_009561320
VERSION     XP_009561320.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563025.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..291
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..291
                     /product="glioma pathogenesis-related protein 1"
                     /calculated_mol_wt=33085
     Region          34..181
                     /region_name="CAP"
                     /note="CAP (cysteine-rich secretory proteins, antigen 5,
                     and pathogenesis-related 1 proteins) domain family;
                     cl00133"
                     /db_xref="CDD:412178"
     CDS             1..291
                     /gene="LOC104061140"
                     /coded_by="XM_009563025.2:120..995"
                     /db_xref="GeneID:104061140"
ORIGIN      
        1 mkitsffaal llldlfvcch aypqdplpdi edakfiedcv rahnkfrskv nppasnmyrm
       61 swdaalakta kawakkckfk hniylkvprk vhptftpvge niwtgtatif svdaalsdwf
      121 nevsrydfnt hscshvcghy tqvvwaesyk vgcavhfcnt venmpgffkv ahfvcnygpa
      181 gnyprkpyka gqpcsgcgne kcrdklcent ereklisyan wypdwdtqph pppyippaeh
      241 ppaehppaeh phsfcdqycl tisilrplfl vlsvgaaflv qqqfphiffy e
//
LOCUS       XP_053937023             763 aa            linear   VRT 09-MAR-2023
DEFINITION  cullin-4A [Cuculus canorus].
ACCESSION   XP_053937023
VERSION     XP_053937023.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081048.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..763
                     /product="cullin-4A"
                     /calculated_mol_wt=88184
     Region          67..664
                     /region_name="Cullin"
                     /note="Cullin family; pfam00888"
                     /db_xref="CDD:459983"
     Region          692..757
                     /region_name="Cullin_Nedd8"
                     /note="Cullin protein neddylation domain; smart00884"
                     /db_xref="CDD:214883"
     CDS             1..763
                     /gene="CUL4A"
                     /coded_by="XM_054081048.1:66..2357"
                     /db_xref="GeneID:104056667"
ORIGIN      
        1 maeepqkkps lhtngltkpa slgaatrapa ggggggggga taaskklvik nfrerpklpd
       61 nytqdtwqkl heaveaiqss isikynleel yqavenlcsy kvsatlykql rqvcedhvka
      121 qilqfredsl dslvflkkin kcwqdhcrqm imirsiflfl drtyvlqnsm lpsiwdmgle
      181 lfrnhvisdk qvqnktidgi llliererng eavdrsllrs llsmlsdlqv ykesfeqrfl
      241 eetnclyaae gqrlmqerev peylhhvnrr leeegdrvit yldhstqkpl iacvekqllg
      301 ehlsailqkg ldnlldenri sdltqtyqlf srvkggqqil lqhwseyikn fgttivvnpe
      361 kdkdmvqell dfkdkvdhii evcfqknekf inlmkesfet finkrpnkpa eliakyvdsk
      421 lragnkeatd eelerildki miifrfihgk dvfeafykkd lakrllvgks asvdaeksml
      481 sklkhecgaa ftsklegmfk dmelskdvmv qfkqymqnqs dpgnidltvn iltmgywpty
      541 tpmevhlnse miklqevfkt fylgkhsgrk lqwqttlgha vlkaefkegk kefqvslfqt
      601 lvllmfnegd efsfedikma tgvedselrr tlqslacgka rvliknpkgk dvedgdkfif
      661 ngdfkhklfr ikinqiqmke tveeqvstte rvfqdrqyqi daaivrimkm rktlghnllv
      721 selynqlkfp vkpgdlkkri eslidrdyme rdkdnpnqyh yva
//
LOCUS       XP_053937049             223 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853769 [Cuculus canorus].
ACCESSION   XP_053937049
VERSION     XP_053937049.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081074.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..223
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..223
                     /product="uncharacterized protein LOC128853769"
                     /calculated_mol_wt=23838
     CDS             1..223
                     /gene="LOC128853769"
                     /coded_by="XM_054081074.1:230..901"
                     /db_xref="GeneID:128853769"
ORIGIN      
        1 mwnsgsehlp acpttilpwg itslcncpah rrsqelllkv ttglprcdhh llqichycph
       61 lcsdlrgals gvqvlqvwpa aaepsqwrpc hpssscrvvr athhrphptt gysatggrsp
      121 ctagiespsq gsidkqekip dqtrgdrslh hdpvlgtrlg vrllpgraet csfadlqptl
      181 vqvqdrnadg qeegmrgcga qgstssggtt lgrllkgtfs ceg
//
LOCUS       XP_053937060             133 aa            linear   VRT 09-MAR-2023
DEFINITION  thyroid hormone-inducible hepatic protein-like [Cuculus canorus].
ACCESSION   XP_053937060
VERSION     XP_053937060.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081085.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..133
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..133
                     /product="thyroid hormone-inducible hepatic protein-like"
                     /calculated_mol_wt=14677
     Region          1..123
                     /region_name="Spot_14"
                     /note="Thyroid hormone-inducible hepatic protein Spot 14;
                     pfam07084"
                     /db_xref="CDD:462085"
     CDS             1..133
                     /gene="LOC128853770"
                     /coded_by="XM_054081085.1:109..510"
                     /db_xref="GeneID:128853770"
ORIGIN      
        1 meqylsatqk meqevmfpsl lrgvfpqqeg aapaagshtd lyeryqllka ikpmvekgla
       61 svtdqsltsd nagtdtssed ndtmdaqlee rlshhlaglq qvlthltrdt naltrrysqi
      121 leqispsegq psw
//
LOCUS       XP_009554331             462 aa            linear   VRT 09-MAR-2023
DEFINITION  cis-aconitate decarboxylase [Cuculus canorus].
ACCESSION   XP_009554331
VERSION     XP_009554331.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556036.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554331.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..462
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..462
                     /product="cis-aconitate decarboxylase"
                     /calculated_mol_wt=50662
     Region          10..455
                     /region_name="PrpD"
                     /note="2-methylcitrate dehydratase PrpD [Carbohydrate
                     transport and metabolism]; COG2079"
                     /db_xref="CDD:441682"
     CDS             1..462
                     /gene="ACOD1"
                     /coded_by="XM_009556036.2:77..1465"
                     /db_xref="GeneID:104054960"
ORIGIN      
        1 mwaktitgnf anvihglnan hltdqviqrs krmildtlgv gllgtrtevc hkvtqyskiy
       61 ssdtsstiwg hldfqlpply aafvngvavh smdfddtwhp athpsgailp avialseafp
      121 qkkkisgldl llafnvgiev qgrllrfsse arnipkrfhp ptvvgtmgsa aacakllafd
      181 rlkckntlai aasyagapla naatqtkplh vgnaakhgle aaclasqglq gnkqildmes
      241 gigafytdyn pqtlpnlqsy pwlldqqdva ikrfpahlgt hwvadaassv rrklvescdn
      301 llpldkiekv ilkvpevkyv nrpsptsehe arhsfqfvac salldgsmsv qsfanenihr
      361 palrellgkt qlehptdntp sfeslycevc vtlrdgttis drcdtfyghw rkplkkedle
      421 kkfqsnassv lpaeaterii etvynlekve dcsvlstfls gq
//
LOCUS       XP_053937093             514 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Myb1 membrane trafficking protein isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053937093
VERSION     XP_053937093.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081118.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..514
                     /product="target of Myb1 membrane trafficking protein
                     isoform X1"
                     /calculated_mol_wt=56669
     Region          12..148
                     /region_name="VHS_Tom1"
                     /note="VHS (Vps27/Hrs/STAM) domain of Target of Myb
                     protein 1; cd16995"
                     /db_xref="CDD:340792"
     Site            order(30..31,34,38,79..80)
                     /site_type="other"
                     /note="putative intraprotein/interprotein binding site
                     [polypeptide binding]"
                     /db_xref="CDD:340792"
     Site            order(48,52,55..56)
                     /site_type="active"
                     /note="putative membrane binding residues [active]"
                     /db_xref="CDD:340792"
     Region          214..308
                     /region_name="GAT_TOM1"
                     /note="canonical GAT domain found in target of Myb protein
                     1 (Tom1); cd14236"
                     /db_xref="CDD:260094"
     Site            order(225..226,229..230,232..233,236..237,240,253,
                     256..257)
                     /site_type="other"
                     /note="ubiquitin binding site [polypeptide binding]"
                     /db_xref="CDD:260094"
     CDS             1..514
                     /gene="LOC104065899"
                     /coded_by="XM_054081118.1:63..1607"
                     /db_xref="GeneID:104065899"
ORIGIN      
        1 mdfllgnpfs spvgqriera tdgslrsenw alnmeicdii neteegpkda fraikkrivg
       61 nknfhevmla ltvletcvkn cghrfhvlvs sqdfvegvlv rtilpknnpp aivhdkvltl
      121 iqswadafrs spdltgvvav yedlrrkgle fpmtdldmls pihtpqrtvy ssnsqsgqns
      181 pavnspqqie silhpitlpa grgtssdmpi tptpeqigkl rselevvngn mkvmsemlte
      241 llpsqaepsd lellqelnrt cramqqrvle liprvlheql teelllindn lnnvflryer
      301 ferlrtgqpv kapneaensl idlepstpav rqpevtnnls sqlagmnlgs ssvsaglhsl
      361 dtsgkleeef dmfaltrgss laeqrrevky edpqasrgla galdarqqnt gaeesgassd
      421 gaqltkwmmr qgmvpvpqan fmediekwls tdvgesedak gvtseefdkf leerakvadr
      481 lptlssssag tsisppaash hrkqakedda mfal
//
LOCUS       XP_053937102             493 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Myb1 membrane trafficking protein isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053937102
VERSION     XP_053937102.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081127.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..493
                     /product="target of Myb1 membrane trafficking protein
                     isoform X2"
                     /calculated_mol_wt=54387
     Region          12..148
                     /region_name="VHS_Tom1"
                     /note="VHS (Vps27/Hrs/STAM) domain of Target of Myb
                     protein 1; cd16995"
                     /db_xref="CDD:340792"
     Site            order(30..31,34,38,79..80)
                     /site_type="other"
                     /note="putative intraprotein/interprotein binding site
                     [polypeptide binding]"
                     /db_xref="CDD:340792"
     Site            order(48,52,55..56)
                     /site_type="active"
                     /note="putative membrane binding residues [active]"
                     /db_xref="CDD:340792"
     Region          214..308
                     /region_name="GAT_TOM1"
                     /note="canonical GAT domain found in target of Myb protein
                     1 (Tom1); cd14236"
                     /db_xref="CDD:260094"
     Site            order(225..226,229..230,232..233,236..237,240,253,
                     256..257)
                     /site_type="other"
                     /note="ubiquitin binding site [polypeptide binding]"
                     /db_xref="CDD:260094"
     CDS             1..493
                     /gene="LOC104065899"
                     /coded_by="XM_054081127.1:63..1544"
                     /db_xref="GeneID:104065899"
ORIGIN      
        1 mdfllgnpfs spvgqriera tdgslrsenw alnmeicdii neteegpkda fraikkrivg
       61 nknfhevmla ltvletcvkn cghrfhvlvs sqdfvegvlv rtilpknnpp aivhdkvltl
      121 iqswadafrs spdltgvvav yedlrrkgle fpmtdldmls pihtpqrtvy ssnsqsgqns
      181 pavnspqqie silhpitlpa grgtssdmpi tptpeqigkl rselevvngn mkvmsemlte
      241 llpsqaepsd lellqelnrt cramqqrvle liprvlheql teelllindn lnnvflryer
      301 ferlrtgqpv kapneaensl idlepstpav rqpevtnnls sqlagmnlgs ssvsaglhsl
      361 dtsgkleeef dmfaltrgss laeqrrevky edpqasrgla galdarqqnt gavpvpqanf
      421 mediekwlst dvgesedakg vtseefdkfl eerakvadrl ptlssssagt sisppaashh
      481 rkqakeddam fal
//
LOCUS       XP_053937116             271 aa            linear   VRT 09-MAR-2023
DEFINITION  sesquipedalian-2 [Cuculus canorus].
ACCESSION   XP_053937116
VERSION     XP_053937116.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081141.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..271
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..271
                     /product="sesquipedalian-2"
                     /calculated_mol_wt=30212
     Region          11..139
                     /region_name="PH_Ses"
                     /note="Sesquipedalian family Pleckstrin homology (PH)
                     domain; cd13288"
                     /db_xref="CDD:270105"
     CDS             1..271
                     /gene="PHETA2"
                     /coded_by="XM_054081141.1:223..1038"
                     /db_xref="GeneID:104055483"
ORIGIN      
        1 mklnersvvh yatcdspadh agflrkrver hhhhthhhha tsyqrrwfvl kgnllfyfee
       61 rdsrepmglv vlegctvelc eaaeefafai rfddagaray vlvadghaam eawvkalsra
      121 sfdymrlvvk elekqleeac kslaacrksp rrssssgrkr hlsnpallpp qekptileng
      181 ystwgsgddi lggaacpdrd gvhakppplp prrrsaasst agsaapslsp ampespvspe
      241 tacfsklhnw ygqeiatlrr ewqerqkrgh p
//
LOCUS       XP_009554903             124 aa            linear   VRT 09-MAR-2023
DEFINITION  NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
            [Cuculus canorus].
ACCESSION   XP_009554903
VERSION     XP_009554903.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556608.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..124
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..124
                     /product="NADH dehydrogenase [ubiquinone] 1 alpha
                     subcomplex subunit 6"
                     /calculated_mol_wt=14424
     Region          21..95
                     /region_name="Complex1_LYR_NDUFA6_LYRM6"
                     /note="LYR (leucine-tyrosine-arginine) motif found in NADH
                     dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
                     (NDUFA6) and similar proteins; cd20266"
                     /db_xref="CDD:380761"
     Site            order(21,28,31,35,59,62..63,66..67,69,75,78..79)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:380761"
     Site            order(25,28,31,35,59,62..63,66..67,75,78)
                     /site_type="other"
                     /note="phosphopantetheine binding site [chemical binding]"
                     /db_xref="CDD:380761"
     CDS             1..124
                     /gene="NDUFA6"
                     /coded_by="XM_009556608.2:45..419"
                     /db_xref="GeneID:104055482"
ORIGIN      
        1 mavagrgavs aavkpifsrd lgeakrrvre lyrawyrevp ntvhlyqldi tvkqgrnkvr
       61 emfmknahvt dprvidilvi kgkmelqeti nvwkqrthvm ryfhetetpr ptdflskfya
      121 ghdp
//
LOCUS       XP_053937135              94 aa            linear   VRT 09-MAR-2023
DEFINITION  essential MCU regulator, mitochondrial [Cuculus canorus].
ACCESSION   XP_053937135
VERSION     XP_053937135.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081160.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..94
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..94
                     /product="essential MCU regulator, mitochondrial"
                     /calculated_mol_wt=9840
     Region          20..88
                     /region_name="DDDD"
                     /note="Putative mitochondrial precursor protein;
                     pfam10161"
                     /db_xref="CDD:431099"
     CDS             1..94
                     /gene="SMDT1"
                     /coded_by="XM_054081160.1:32..316"
                     /db_xref="GeneID:104055529"
ORIGIN      
        1 mvvaggrlla avalhagrag sfrspaglvv prrgatvtrs gailpkpvkt pfgllrvfsv
       61 vipflyvgtq isknfaalle ehdifvpedd dddd
//
LOCUS       XP_053937148             347 aa            linear   VRT 09-MAR-2023
DEFINITION  acrosin-like [Cuculus canorus].
ACCESSION   XP_053937148
VERSION     XP_053937148.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081173.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..347
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..347
                     /product="acrosin-like"
                     /calculated_mol_wt=37668
     Region          43..276
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            order(85,134,231)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(225,252,254)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..347
                     /gene="LOC128853790"
                     /coded_by="XM_054081173.1:567..1610"
                     /db_xref="GeneID:128853790"
ORIGIN      
        1 mnvlfvltll alfwpaqgsw dtcetcglrp sdyqnyssah aaggsdghpg awpwivsvqq
       61 ireagvvhic ggtlihpqwv ltaahcfvnt hnvlmwrvva gimhlahegp evqvrymkri
      121 lghkgysnit qandialiel depfqcspyv qlacvpdfsl rvqelktcyv sgwgatmags
      181 pgmppvlles qvhllnthac nssgwyrgai hphnlcagyp qggidtcqgd sggplvcqdp
      241 hanhswlvgv tswgrgcara rrpgvytstq yfrewivaqm gmdlagaats tesakthflt
      301 isnpgegpqp eptqravsst cpfhldklkg vfaqlqkvlk flrggkd
//
LOCUS       XP_053937160             989 aa            linear   VRT 09-MAR-2023
DEFINITION  protein bicaudal D homolog 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053937160
VERSION     XP_053937160.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081185.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..989
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..989
                     /product="protein bicaudal D homolog 1 isoform X1"
                     /calculated_mol_wt=112770
     Region          74..803
                     /region_name="BicD"
                     /note="Microtubule-associated protein Bicaudal-D;
                     pfam09730"
                     /db_xref="CDD:462863"
     CDS             1..989
                     /gene="BICD1"
                     /coded_by="XM_054081185.1:188..3157"
                     /db_xref="GeneID:104056369"
ORIGIN      
        1 maaeevlqga ehykseierl trelsetthe kiqaaeyglv vleekltlkq qydeleaeyd
       61 glkqeleqlk eafgqsfsih rkvaedgetr eetllqesas keayylgkil emqnelkqsk
      121 avvtnvqaen erltaivqdl kennemvelq rvrmkdeire ykfrearllq dyteleeeni
      181 tlqklvstlk qnqveyeglk heikrfeeet vllnsqleda irlkeiaehq leealetlkn
      241 ereqknnlrk elsqyinlnd smynnhinis vdglkfaedg gepnnddkmn ghihgplvkl
      301 ngdyrtptsr kgeslhpvsd lfselnisei qklkqqlmqv erekaillan lqesqtqleh
      361 tkgalteqhe rvhrltehvn amrglqsnke lkveldcekg rdpgeeahdy evdingleil
      421 eckykvavte vidlkaeika lkekynnyve nyteekakye sriqtydeqv tnlekstkes
      481 qekmvhmeke lqrmtsiane nhntlntaqd elvtfseela qlyhhvclcn netpnrvmld
      541 yyrqsrvtrs gslkgpddpr gllsprlarr gvaspveart pteqvtkett epgkeqsptk
      601 tptispvita ppsspvsdts dirkepmniy nlnaiirdqi khlqkavdrs lqlsrqraaa
      661 relapmidkd kealmeeilk lksllstkre qiatlravlk ankqtaeval anlknkyene
      721 kamvtetmtk lrnelkalke daatfsslra mfatrcdeyv tqldemqrql aaaedekktl
      781 nsllrmaiqq klaltqrled lefdheqsrr skgklgkski gspkvseeas atvpsidtfl
      841 lhsqgpqqpn llvssgtqrk rlfspslcdq shprtsgtyl qkllrapphp astesyllrg
      901 ppsmsefihg hrlskekrlt vatpvlmlfq ksshipalsv plstvslsll lilnlhmqhk
      961 rkceqsgfha tkaggvpskq vdnlalfvh
//
LOCUS       XP_053937169             889 aa            linear   VRT 09-MAR-2023
DEFINITION  protein bicaudal D homolog 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053937169
VERSION     XP_053937169.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081194.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..889
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..889
                     /product="protein bicaudal D homolog 1 isoform X2"
                     /calculated_mol_wt=101577
     Region          74..803
                     /region_name="BicD"
                     /note="Microtubule-associated protein Bicaudal-D;
                     pfam09730"
                     /db_xref="CDD:462863"
     CDS             1..889
                     /gene="BICD1"
                     /coded_by="XM_054081194.1:188..2857"
                     /db_xref="GeneID:104056369"
ORIGIN      
        1 maaeevlqga ehykseierl trelsetthe kiqaaeyglv vleekltlkq qydeleaeyd
       61 glkqeleqlk eafgqsfsih rkvaedgetr eetllqesas keayylgkil emqnelkqsk
      121 avvtnvqaen erltaivqdl kennemvelq rvrmkdeire ykfrearllq dyteleeeni
      181 tlqklvstlk qnqveyeglk heikrfeeet vllnsqleda irlkeiaehq leealetlkn
      241 ereqknnlrk elsqyinlnd smynnhinis vdglkfaedg gepnnddkmn ghihgplvkl
      301 ngdyrtptsr kgeslhpvsd lfselnisei qklkqqlmqv erekaillan lqesqtqleh
      361 tkgalteqhe rvhrltehvn amrglqsnke lkveldcekg rdpgeeahdy evdingleil
      421 eckykvavte vidlkaeika lkekynnyve nyteekakye sriqtydeqv tnlekstkes
      481 qekmvhmeke lqrmtsiane nhntlntaqd elvtfseela qlyhhvclcn netpnrvmld
      541 yyrqsrvtrs gslkgpddpr gllsprlarr gvaspveart pteqvtkett epgkeqsptk
      601 tptispvita ppsspvsdts dirkepmniy nlnaiirdqi khlqkavdrs lqlsrqraaa
      661 relapmidkd kealmeeilk lksllstkre qiatlravlk ankqtaeval anlknkyene
      721 kamvtetmtk lrnelkalke daatfsslra mfatrcdeyv tqldemqrql aaaedekktl
      781 nsllrmaiqq klaltqrled lefdheqsrr skgklgkski gspkvseeas atvpsidtfl
      841 lhsqgpqqpn llvssgtqrk spnalpeeqp hsssqcapln clskpppyp
//
LOCUS       XP_053937178             881 aa            linear   VRT 09-MAR-2023
DEFINITION  protein bicaudal D homolog 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053937178
VERSION     XP_053937178.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081203.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..881
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..881
                     /product="protein bicaudal D homolog 1 isoform X3"
                     /calculated_mol_wt=100690
     Region          74..803
                     /region_name="BicD"
                     /note="Microtubule-associated protein Bicaudal-D;
                     pfam09730"
                     /db_xref="CDD:462863"
     CDS             1..881
                     /gene="BICD1"
                     /coded_by="XM_054081203.1:188..2833"
                     /db_xref="GeneID:104056369"
ORIGIN      
        1 maaeevlqga ehykseierl trelsetthe kiqaaeyglv vleekltlkq qydeleaeyd
       61 glkqeleqlk eafgqsfsih rkvaedgetr eetllqesas keayylgkil emqnelkqsk
      121 avvtnvqaen erltaivqdl kennemvelq rvrmkdeire ykfrearllq dyteleeeni
      181 tlqklvstlk qnqveyeglk heikrfeeet vllnsqleda irlkeiaehq leealetlkn
      241 ereqknnlrk elsqyinlnd smynnhinis vdglkfaedg gepnnddkmn ghihgplvkl
      301 ngdyrtptsr kgeslhpvsd lfselnisei qklkqqlmqv erekaillan lqesqtqleh
      361 tkgalteqhe rvhrltehvn amrglqsnke lkveldcekg rdpgeeahdy evdingleil
      421 eckykvavte vidlkaeika lkekynnyve nyteekakye sriqtydeqv tnlekstkes
      481 qekmvhmeke lqrmtsiane nhntlntaqd elvtfseela qlyhhvclcn netpnrvmld
      541 yyrqsrvtrs gslkgpddpr gllsprlarr gvaspveart pteqvtkett epgkeqsptk
      601 tptispvita ppsspvsdts dirkepmniy nlnaiirdqi khlqkavdrs lqlsrqraaa
      661 relapmidkd kealmeeilk lksllstkre qiatlravlk ankqtaeval anlknkyene
      721 kamvtetmtk lrnelkalke daatfsslra mfatrcdeyv tqldemqrql aaaedekktl
      781 nsllrmaiqq klaltqrled lefdheqsrr skgklgkski gspkflvdcq qpaasipphg
      841 sqlargpdcq tvspnalpee qphsssqcap lnclskpppy p
//
LOCUS       XP_053937185             874 aa            linear   VRT 09-MAR-2023
DEFINITION  protein bicaudal D homolog 1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053937185
VERSION     XP_053937185.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081210.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..874
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..874
                     /product="protein bicaudal D homolog 1 isoform X4"
                     /calculated_mol_wt=100017
     Region          74..803
                     /region_name="BicD"
                     /note="Microtubule-associated protein Bicaudal-D;
                     pfam09730"
                     /db_xref="CDD:462863"
     CDS             1..874
                     /gene="BICD1"
                     /coded_by="XM_054081210.1:188..2812"
                     /db_xref="GeneID:104056369"
ORIGIN      
        1 maaeevlqga ehykseierl trelsetthe kiqaaeyglv vleekltlkq qydeleaeyd
       61 glkqeleqlk eafgqsfsih rkvaedgetr eetllqesas keayylgkil emqnelkqsk
      121 avvtnvqaen erltaivqdl kennemvelq rvrmkdeire ykfrearllq dyteleeeni
      181 tlqklvstlk qnqveyeglk heikrfeeet vllnsqleda irlkeiaehq leealetlkn
      241 ereqknnlrk elsqyinlnd smynnhinis vdglkfaedg gepnnddkmn ghihgplvkl
      301 ngdyrtptsr kgeslhpvsd lfselnisei qklkqqlmqv erekaillan lqesqtqleh
      361 tkgalteqhe rvhrltehvn amrglqsnke lkveldcekg rdpgeeahdy evdingleil
      421 eckykvavte vidlkaeika lkekynnyve nyteekakye sriqtydeqv tnlekstkes
      481 qekmvhmeke lqrmtsiane nhntlntaqd elvtfseela qlyhhvclcn netpnrvmld
      541 yyrqsrvtrs gslkgpddpr gllsprlarr gvaspveart pteqvtkett epgkeqsptk
      601 tptispvita ppsspvsdts dirkepmniy nlnaiirdqi khlqkavdrs lqlsrqraaa
      661 relapmidkd kealmeeilk lksllstkre qiatlravlk ankqtaeval anlknkyene
      721 kamvtetmtk lrnelkalke daatfsslra mfatrcdeyv tqldemqrql aaaedekktl
      781 nsllrmaiqq klaltqrled lefdheqsrr skgklgkski gspkvseeas atvpsidtfl
      841 lhsqgpqqpn llvssgtqrk raipglqgpt srny
//
LOCUS       XP_053937193             839 aa            linear   VRT 09-MAR-2023
DEFINITION  protein bicaudal D homolog 1 isoform X5 [Cuculus canorus].
ACCESSION   XP_053937193
VERSION     XP_053937193.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081218.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..839
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..839
                     /product="protein bicaudal D homolog 1 isoform X5"
                     /calculated_mol_wt=96387
     Region          74..803
                     /region_name="BicD"
                     /note="Microtubule-associated protein Bicaudal-D;
                     pfam09730"
                     /db_xref="CDD:462863"
     CDS             1..839
                     /gene="BICD1"
                     /coded_by="XM_054081218.1:188..2707"
                     /db_xref="GeneID:104056369"
ORIGIN      
        1 maaeevlqga ehykseierl trelsetthe kiqaaeyglv vleekltlkq qydeleaeyd
       61 glkqeleqlk eafgqsfsih rkvaedgetr eetllqesas keayylgkil emqnelkqsk
      121 avvtnvqaen erltaivqdl kennemvelq rvrmkdeire ykfrearllq dyteleeeni
      181 tlqklvstlk qnqveyeglk heikrfeeet vllnsqleda irlkeiaehq leealetlkn
      241 ereqknnlrk elsqyinlnd smynnhinis vdglkfaedg gepnnddkmn ghihgplvkl
      301 ngdyrtptsr kgeslhpvsd lfselnisei qklkqqlmqv erekaillan lqesqtqleh
      361 tkgalteqhe rvhrltehvn amrglqsnke lkveldcekg rdpgeeahdy evdingleil
      421 eckykvavte vidlkaeika lkekynnyve nyteekakye sriqtydeqv tnlekstkes
      481 qekmvhmeke lqrmtsiane nhntlntaqd elvtfseela qlyhhvclcn netpnrvmld
      541 yyrqsrvtrs gslkgpddpr gllsprlarr gvaspveart pteqvtkett epgkeqsptk
      601 tptispvita ppsspvsdts dirkepmniy nlnaiirdqi khlqkavdrs lqlsrqraaa
      661 relapmidkd kealmeeilk lksllstkre qiatlravlk ankqtaeval anlknkyene
      721 kamvtetmtk lrnelkalke daatfsslra mfatrcdeyv tqldemqrql aaaedekktl
      781 nsllrmaiqq klaltqrled lefdheqsrr skgklgkski gspkivssll ppyrhtahn
//
LOCUS       XP_053937198             831 aa            linear   VRT 09-MAR-2023
DEFINITION  protein bicaudal D homolog 1 isoform X6 [Cuculus canorus].
ACCESSION   XP_053937198
VERSION     XP_053937198.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081223.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..831
                     /product="protein bicaudal D homolog 1 isoform X6"
                     /calculated_mol_wt=95486
     Region          74..803
                     /region_name="BicD"
                     /note="Microtubule-associated protein Bicaudal-D;
                     pfam09730"
                     /db_xref="CDD:462863"
     CDS             1..831
                     /gene="BICD1"
                     /coded_by="XM_054081223.1:188..2683"
                     /db_xref="GeneID:104056369"
ORIGIN      
        1 maaeevlqga ehykseierl trelsetthe kiqaaeyglv vleekltlkq qydeleaeyd
       61 glkqeleqlk eafgqsfsih rkvaedgetr eetllqesas keayylgkil emqnelkqsk
      121 avvtnvqaen erltaivqdl kennemvelq rvrmkdeire ykfrearllq dyteleeeni
      181 tlqklvstlk qnqveyeglk heikrfeeet vllnsqleda irlkeiaehq leealetlkn
      241 ereqknnlrk elsqyinlnd smynnhinis vdglkfaedg gepnnddkmn ghihgplvkl
      301 ngdyrtptsr kgeslhpvsd lfselnisei qklkqqlmqv erekaillan lqesqtqleh
      361 tkgalteqhe rvhrltehvn amrglqsnke lkveldcekg rdpgeeahdy evdingleil
      421 eckykvavte vidlkaeika lkekynnyve nyteekakye sriqtydeqv tnlekstkes
      481 qekmvhmeke lqrmtsiane nhntlntaqd elvtfseela qlyhhvclcn netpnrvmld
      541 yyrqsrvtrs gslkgpddpr gllsprlarr gvaspveart pteqvtkett epgkeqsptk
      601 tptispvita ppsspvsdts dirkepmniy nlnaiirdqi khlqkavdrs lqlsrqraaa
      661 relapmidkd kealmeeilk lksllstkre qiatlravlk ankqtaeval anlknkyene
      721 kamvtetmtk lrnelkalke daatfsslra mfatrcdeyv tqldemqrql aaaedekktl
      781 nsllrmaiqq klaltqrled lefdheqsrr skgklgkski gspktiltfp l
//
LOCUS       XP_053937206             825 aa            linear   VRT 09-MAR-2023
DEFINITION  protein bicaudal D homolog 1 isoform X7 [Cuculus canorus].
ACCESSION   XP_053937206
VERSION     XP_053937206.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081231.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..825
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..825
                     /product="protein bicaudal D homolog 1 isoform X7"
                     /calculated_mol_wt=94787
     Region          74..803
                     /region_name="BicD"
                     /note="Microtubule-associated protein Bicaudal-D;
                     pfam09730"
                     /db_xref="CDD:462863"
     CDS             1..825
                     /gene="BICD1"
                     /coded_by="XM_054081231.1:188..2665"
                     /db_xref="GeneID:104056369"
ORIGIN      
        1 maaeevlqga ehykseierl trelsetthe kiqaaeyglv vleekltlkq qydeleaeyd
       61 glkqeleqlk eafgqsfsih rkvaedgetr eetllqesas keayylgkil emqnelkqsk
      121 avvtnvqaen erltaivqdl kennemvelq rvrmkdeire ykfrearllq dyteleeeni
      181 tlqklvstlk qnqveyeglk heikrfeeet vllnsqleda irlkeiaehq leealetlkn
      241 ereqknnlrk elsqyinlnd smynnhinis vdglkfaedg gepnnddkmn ghihgplvkl
      301 ngdyrtptsr kgeslhpvsd lfselnisei qklkqqlmqv erekaillan lqesqtqleh
      361 tkgalteqhe rvhrltehvn amrglqsnke lkveldcekg rdpgeeahdy evdingleil
      421 eckykvavte vidlkaeika lkekynnyve nyteekakye sriqtydeqv tnlekstkes
      481 qekmvhmeke lqrmtsiane nhntlntaqd elvtfseela qlyhhvclcn netpnrvmld
      541 yyrqsrvtrs gslkgpddpr gllsprlarr gvaspveart pteqvtkett epgkeqsptk
      601 tptispvita ppsspvsdts dirkepmniy nlnaiirdqi khlqkavdrs lqlsrqraaa
      661 relapmidkd kealmeeilk lksllstkre qiatlravlk ankqtaeval anlknkyene
      721 kamvtetmtk lrnelkalke daatfsslra mfatrcdeyv tqldemqrql aaaedekktl
      781 nsllrmaiqq klaltqrled lefdheqsrr skgklgkski gspks
//
LOCUS       XP_053937214             981 aa            linear   VRT 09-MAR-2023
DEFINITION  protein bicaudal D homolog 1 isoform X8 [Cuculus canorus].
ACCESSION   XP_053937214
VERSION     XP_053937214.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081239.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..981
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..981
                     /product="protein bicaudal D homolog 1 isoform X8"
                     /calculated_mol_wt=111705
     Region          74..803
                     /region_name="BicD"
                     /note="Microtubule-associated protein Bicaudal-D;
                     pfam09730"
                     /db_xref="CDD:462863"
     CDS             1..981
                     /gene="BICD1"
                     /coded_by="XM_054081239.1:188..3133"
                     /db_xref="GeneID:104056369"
ORIGIN      
        1 maaeevlqga ehykseierl trelsetthe kiqaaeyglv vleekltlkq qydeleaeyd
       61 glkqeleqlk eafgqsfsih rkvaedgetr eetllqesas keayylgkil emqnelkqsk
      121 avvtnvqaen erltaivqdl kennemvelq rvrmkdeire ykfrearllq dyteleeeni
      181 tlqklvstlk qnqveyeglk heikrfeeet vllnsqleda irlkeiaehq leealetlkn
      241 ereqknnlrk elsqyinlnd smynnhinis vdglkfaedg gepnnddkmn ghihgplvkl
      301 ngdyrtptsr kgeslhpvsd lfselnisei qklkqqlmqv erekaillan lqesqtqleh
      361 tkgalteqhe rvhrltehvn amrglqsnke lkveldcekg rdpgeeahdy evdingleil
      421 eckykvavte vidlkaeika lkekynnyve nyteekakye sriqtydeqv tnlekstkes
      481 qekmvhmeke lqrmtsiane nhntlntaqd elvtfseela qlyhhvclcn netpnrvmld
      541 yyrqsrvtrs gslkgpddpr gllsprlarr gvaspveart pteqvtkett epgkeqsptk
      601 tptispvita ppsspvsdts dirkepmniy nlnaiirdqi khlqkavdrs lqlsrqraaa
      661 relapmidkd kealmeeilk lksllstkre qiatlravlk ankqtaeval anlknkyene
      721 kamvtetmtk lrnelkalke daatfsslra mfatrcdeyv tqldemqrql aaaedekktl
      781 nsllrmaiqq klaltqrled lefdheqsrr skgklgkski gspkvseeas atvpsidtfl
      841 lhsqgpqqpn llvssgtqrk rlfspslcdq shprtsgtyl qkllrapphp astesyllrg
      901 ppsmsefihg hrlskekrlt vatpakrycq qpaasipphg sqlargpdcq tvspnalpee
      961 qphsssqcap lnclskpppy p
//
LOCUS       XP_053937225             286 aa            linear   VRT 09-MAR-2023
DEFINITION  F-actin-capping protein subunit alpha-2 [Cuculus canorus].
ACCESSION   XP_053937225
VERSION     XP_053937225.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081250.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..286
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..286
                     /product="F-actin-capping protein subunit alpha-2"
                     /calculated_mol_wt=32728
     Region          17..282
                     /region_name="F-actin_cap_A"
                     /note="F-actin capping protein alpha subunit; pfam01267"
                     /db_xref="CDD:460142"
     CDS             1..286
                     /gene="CAPZA2"
                     /coded_by="XM_054081250.1:63..923"
                     /db_xref="GeneID:104064325"
ORIGIN      
        1 madleeqlsd eekvriaakf iihappgefn evfndvrlll nndnllrega ahafaqynld
       61 qftpvkidgy deqvlitehg dlgngkfldp knkisfkfdh lrkeatdprp hevenaiesw
      121 rnsvetamka yvkehypngv ctvygktidg qqtiiacies hqfqaknfwn grwrsewkft
      181 itpsttqvag ilkiqvhyye dgnvqlvshk diqdsltvsn eaqtakefik iveaaeneyq
      241 taisenyqtm sdttfkalrr qlpvtrtkid wnkilsykig kemqna
//
LOCUS       XP_009564264             395 aa            linear   VRT 09-MAR-2023
DEFINITION  cytokine receptor-like factor 2 [Cuculus canorus].
ACCESSION   XP_009564264
VERSION     XP_009564264.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565969.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564264.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..395
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..395
                     /product="cytokine receptor-like factor 2"
                     /calculated_mol_wt=45132
     Region          140..>209
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     CDS             1..395
                     /gene="CRLF2"
                     /coded_by="XM_009565969.2:31..1218"
                     /db_xref="GeneID:104063719"
ORIGIN      
        1 miscslhtsa cyvipttmrl ifeacsvift lgnlvasqsq ppgskdailt tiinfnhekm
       61 qitwaarklf phenvsfsyt fdegdhiiwk pcptylldqd ynygclfete gptlaisirn
      121 nngskelysk rlksdfyikp sppenvtflw kedtvtvscn kpnravrclt lelqykskfd
      181 kdwqsrtakc csvreqgfdp gkcyyfrvrl krlvpycnvv hyssvweaet fwmngtllds
      241 cddgiksqsn tvivliclla vlllmlifsi llckwqrlqk svmpaipdpk yvfadlfndh
      301 ngnfqewidk tdpavvqtel eyeepeciie aenqqeddkn sdkqgpqenp fcfseadenn
      361 dfkvaqiacm tpasntiasf agfkilmndd myvml
//
LOCUS       XP_009563248            1238 aa            linear   VRT 09-MAR-2023
DEFINITION  structural maintenance of chromosomes protein 1B isoform X1
            [Cuculus canorus].
ACCESSION   XP_009563248
VERSION     XP_009563248.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009564953.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009563248.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1238
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1238
                     /product="structural maintenance of chromosomes protein 1B
                     isoform X1"
                     /calculated_mol_wt=143391
     Region          3..1199
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     CDS             1..1238
                     /gene="SMC1B"
                     /coded_by="XM_009564953.2:1..3717"
                     /db_xref="GeneID:104062830"
ORIGIN      
        1 mgylkllvve dfkswrgqqv igpfmrfnci igpngsgksn imdavsfvmc ektsnlrvks
       61 irelihgghv gkpvsstasv kivyceddgg ektfsriirg scsefyfndn svsrsayise
      121 lekigilvka rnclifqgtv esiamkkpke rtqlfeqisn swefaedyeq kkkkmkqaee
      181 daqfnynkkk siaaerkqak iekeeaehyq vllqdldeer iqlqlfrlyh neknsdilkt
      241 sldektmeas lkkdslatae dafrakkkvl gvqnreqqql ereiktlets liqqkslyvk
      301 akentsyqik kveaskislr dkekscdkek qnikeleiel hsiekawraf ekkaeeeilq
      361 raahvelges qlehykslke markkvatlt qqveklrwee kadqerlkln rrkkkeveen
      421 ikqtveqiee hkkrieklee yakicnesla dkkeqeevlt keienstvrm aevneelnkt
      481 vselqnarid yhegrrqqmr aeileslkrl ypdsvfgrll dlchpihkky qlavtkvfsk
      541 ymtaivvate ktardcirfl kqeraepetf laldyldvkp ineklreikg akmmvdviqt
      601 pfaplkrviq fvcgnglvce tvkeakqiaf dgpvrlktva ldgtlfmksg visggssdlr
      661 fkarcwddke mnkmkekrds linelkelmk vkrkeadlkq lhahchgiqt rlkysqseld
      721 likkkhlanl yveksklese lvniesqydm lnegvaqrkg kieafqkkin ededavfref
      781 ceeigienir vyeqehlkqq eeidkkrlef enqktrlniq leynrdhlqk ltnavsklre
      841 ttqkdeaein glqkdeekll kkvneiveqq qhlkdrlnvh ksqvtktqne veefrktllt
      901 lnreatklqk eataietale ekrlrrhnml leckvqdlki kllsgslddi seielgtete
      961 gtettssiye reeaiqidys glaedlkdll sdkdiedqln qmqqeikske ntlvktaapn
     1021 lraveklqia rdkfqesida feasrkeart ckqefeevkk kryelfsrcf ehasvavdqi
     1081 ykklcrnhsa qaflspenpe epylegigfn clapgkrfmp mdslsggeks vaalalvfai
     1141 hsfrpapffi ldeidaaldn tnidkvssfi rdqaheqlqm ivislkeefy skadaligvc
     1201 peyddimfsr vltfdltqyp engdqertek qtlspvse
//
LOCUS       XP_053937252            1164 aa            linear   VRT 09-MAR-2023
DEFINITION  structural maintenance of chromosomes protein 1B isoform X2
            [Cuculus canorus].
ACCESSION   XP_053937252
VERSION     XP_053937252.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081277.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1164
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1164
                     /product="structural maintenance of chromosomes protein 1B
                     isoform X2"
                     /calculated_mol_wt=135381
     Region          3..1066
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     Region          4..>148
                     /region_name="ABC_SMC1_euk"
                     /note="ATP-binding cassette domain of eukaryotic SMC1
                     proteins; cd03275"
                     /db_xref="CDD:213242"
     Site            32..39
                     /site_type="other"
                     /note="Walker A/P-loop"
                     /db_xref="CDD:213242"
     Site            134..137
                     /site_type="other"
                     /note="Q-loop/lid"
                     /db_xref="CDD:213242"
     Region          <1090..1142
                     /region_name="P-loop containing Nucleoside Triphosphate
                     Hydrolases"
                     /note="Members of the P-loop NTPase domain superfamily are
                     characterized by a conserved nucleotide phosphate-binding
                     motif, also referred to as the Walker A motif
                     (GxxxxGK[S/T], where x is any residue), and the Walker B
                     motif (hhhh[D/E], where h is a...; cl38936"
                     /db_xref="CDD:476819"
     Site            1107..1113
                     /site_type="other"
                     /note="H-loop/switch region"
                     /db_xref="CDD:213179"
     CDS             1..1164
                     /gene="SMC1B"
                     /coded_by="XM_054081277.1:1..3495"
                     /db_xref="GeneID:104062830"
ORIGIN      
        1 mgylkllvve dfkswrgqqv igpfmrfnci igpngsgksn imdavsfvmc ektsnlrvks
       61 irelihgghv gkpvsstasv kivyceddgg ektfsriirg scsefyfndn svsrsayise
      121 lekigilvka rnclifqgtv esiamkkpke rtqlfeqisn swefaedyeq kkkkmkqaee
      181 daqfnynkkk siaaerkqak iekeeaehyq vllqdldeer iqlqlfrlyh neknsdilkt
      241 sldektmeas lkkdslatae dafrakkkvl gvqnreqqql ereiktlets liqqkslyvk
      301 akentsyqik kveaskislr dkekscdkek qnikeleiel hsiekawraf ekkaeeeilq
      361 raahvelges qlehykslke markkvatlt qqveklrwee kadqerlkln rrkkkeveen
      421 ikqtveqiee hkkrieklee yakicnesla dkkeqeevlt keienstvrm aevneelnkt
      481 vselqnarid yhegrrqqmr aeileslkrl ypdsvfgrll dlchpihkky qlavtkvfsk
      541 ymtaivvate ktardcirfl kqeraepetf laldyldvkp ineklreikg akmmvdviqt
      601 pfaplkrviq fvcgnglvce tvkeakqiaf dgpvrlktva ldgtlfmksg visggssdlr
      661 fkarcwddke mnkmkekrds linelkelmk vkrkeadlkq lhahchgiqt rlkysqseld
      721 likkkhlanl yveksklese lvniesqydm lnegvaqrkg kieafqkkin ededavfref
      781 ceeigienir vyeqehlkqq eeidkkrlef enqktrlniq leynrdhlqk ltnavsklre
      841 ttqkdeaein glqkdeekll kkvneiveqq qhlkdrlnvh ksqvtktqne veefrktllt
      901 lnreatklqk eataietale ekrlrrhnml leckvqdlki kllsgslddi seielgtete
      961 gtettssiye reeaiqidys glaedlkdll sdkdiedqln qmqqeikske ntlvktaapn
     1021 lraveklqia rdkfqesida feasrkeart ckqefeevkk kryelfsrcf ehasvavdqi
     1081 ykklcrnhsa qvssfirdqa heqlqmivis lkeefyskad aligvcpeyd dimfsrvltf
     1141 dltqypengd qertekqtls pvse
//
LOCUS       XP_053937266             223 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853799 [Cuculus canorus].
ACCESSION   XP_053937266
VERSION     XP_053937266.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081291.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..223
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..223
                     /product="uncharacterized protein LOC128853799"
                     /calculated_mol_wt=23838
     CDS             1..223
                     /gene="LOC128853799"
                     /coded_by="XM_054081291.1:230..901"
                     /db_xref="GeneID:128853799"
ORIGIN      
        1 mwnsgsehlp acpttilpwg itslcncpah rrsqelllkv ttglprcdhh llqichycph
       61 lcsdlrgals gvqvlqvwpa aaepsqwrpc hpssscrvvr athhrphptt gysatggrsp
      121 ctagiespsq gsidkqekip dqtrgdrslh hdpvlgtrlg vrllpgraet csfadlqptl
      181 vqvqdrnadg qeegmrgcga qgstssggtt lgrllkgtfs ceg
//
LOCUS       XP_009564735             133 aa            linear   VRT 09-MAR-2023
DEFINITION  thyroid hormone-inducible hepatic protein [Cuculus canorus].
ACCESSION   XP_009564735
VERSION     XP_009564735.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566440.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..133
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..133
                     /product="thyroid hormone-inducible hepatic protein"
                     /calculated_mol_wt=14677
     Region          1..123
                     /region_name="Spot_14"
                     /note="Thyroid hormone-inducible hepatic protein Spot 14;
                     pfam07084"
                     /db_xref="CDD:462085"
     CDS             1..133
                     /gene="LOC104064142"
                     /coded_by="XM_009566440.2:91..492"
                     /db_xref="GeneID:104064142"
ORIGIN      
        1 meqylsatqk meqevmfpsl lrgvfpqqeg aapaagshtd lyeryqllka ikpmvekgla
       61 svtdqsltsd nagtdtssed ndtmdaqlee rlshhlaglq qvlthltrdt naltrrysqi
      121 leqispsegq psw
//
LOCUS       XP_053937291             323 aa            linear   VRT 09-MAR-2023
DEFINITION  dehydrogenase/reductase SDR family member 12 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053937291
VERSION     XP_053937291.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081316.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..323
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..323
                     /product="dehydrogenase/reductase SDR family member 12
                     isoform X1"
                     /calculated_mol_wt=36056
     Region          40..293
                     /region_name="Rossmann-fold NAD(P)(+)-binding proteins"
                     /note="A large family of proteins that share a
                     Rossmann-fold NAD(P)H/NAD(P)(+) binding (NADB) domain. The
                     NADB domain is found in numerous dehydrogenases of
                     metabolic pathways such as glycolysis, and many other
                     redox enzymes. NAD binding involves numerous...; cl21454"
                     /db_xref="CDD:473865"
     Site            order(47,49..50,52,71..73,125..127,179..181,201,205,
                     229..232)
                     /site_type="other"
                     /note="NAD(P) binding site [chemical binding]"
                     /db_xref="CDD:187535"
     Site            order(147,181,201,205)
                     /site_type="active"
                     /db_xref="CDD:187535"
     CDS             1..323
                     /gene="DHRS12"
                     /coded_by="XM_054081316.1:170..1141"
                     /db_xref="GeneID:104066176"
ORIGIN      
        1 mswyrnavwf vkglreygrn gyesasrhfn padlevnlag rsflvtgans gigkatakei
       61 arrggtvhlv crnkeraeva keeietetgn qsiflhvvdi snpkeiwnfa ekfktehkln
      121 vlinnagcmv nnreltedgl ernfatntlg tyilttallp llekeadarv itvssggmlv
      181 qklnisdlqs angtfdgtmv yaqnkrqqvv lterwakahr nihfsvmhpg wadtpavrss
      241 mpdfyqrmkd slrteiqgad tvvwlavsse atqlpsglff qdrqpvpthl plastrsppe
      301 deeklmemle elsqrfksts pgt
//
LOCUS       XP_053937298             195 aa            linear   VRT 09-MAR-2023
DEFINITION  dehydrogenase/reductase SDR family member 12 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053937298
VERSION     XP_053937298.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081323.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..195
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..195
                     /product="dehydrogenase/reductase SDR family member 12
                     isoform X2"
                     /calculated_mol_wt=21694
     Region          <1..165
                     /region_name="Rossmann-fold NAD(P)(+)-binding proteins"
                     /note="A large family of proteins that share a
                     Rossmann-fold NAD(P)H/NAD(P)(+) binding (NADB) domain. The
                     NADB domain is found in numerous dehydrogenases of
                     metabolic pathways such as glycolysis, and many other
                     redox enzymes. NAD binding involves numerous...; cl21454"
                     /db_xref="CDD:473865"
     Site            order(19,53,73,77)
                     /site_type="active"
                     /db_xref="CDD:187535"
     CDS             1..195
                     /gene="DHRS12"
                     /coded_by="XM_054081323.1:406..993"
                     /db_xref="GeneID:104066176"
ORIGIN      
        1 mvnnrelted glernfatnt lgtyilttal lpllekeada rvitvssggm lvqklnisdl
       61 qsangtfdgt mvyaqnkrqq vvlterwaka hrnihfsvmh pgwadtpavr ssmpdfyqrm
      121 kdslrteiqg adtvvwlavs seatqlpsgl ffqdrqpvpt hlplastrsp pedeeklmem
      181 leelsqrfks tspgt
//
LOCUS       XP_053937306             195 aa            linear   VRT 09-MAR-2023
DEFINITION  dehydrogenase/reductase SDR family member 12 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053937306
VERSION     XP_053937306.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081331.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..195
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..195
                     /product="dehydrogenase/reductase SDR family member 12
                     isoform X2"
                     /calculated_mol_wt=21694
     Region          <1..165
                     /region_name="Rossmann-fold NAD(P)(+)-binding proteins"
                     /note="A large family of proteins that share a
                     Rossmann-fold NAD(P)H/NAD(P)(+) binding (NADB) domain. The
                     NADB domain is found in numerous dehydrogenases of
                     metabolic pathways such as glycolysis, and many other
                     redox enzymes. NAD binding involves numerous...; cl21454"
                     /db_xref="CDD:473865"
     Site            order(19,53,73,77)
                     /site_type="active"
                     /db_xref="CDD:187535"
     CDS             1..195
                     /gene="DHRS12"
                     /coded_by="XM_054081331.1:427..1014"
                     /db_xref="GeneID:104066176"
ORIGIN      
        1 mvnnrelted glernfatnt lgtyilttal lpllekeada rvitvssggm lvqklnisdl
       61 qsangtfdgt mvyaqnkrqq vvlterwaka hrnihfsvmh pgwadtpavr ssmpdfyqrm
      121 kdslrteiqg adtvvwlavs seatqlpsgl ffqdrqpvpt hlplastrsp pedeeklmem
      181 leelsqrfks tspgt
//
LOCUS       XP_009554766             190 aa            linear   VRT 09-MAR-2023
DEFINITION  vitelline membrane outer layer protein 1 [Cuculus canorus].
ACCESSION   XP_009554766
VERSION     XP_009554766.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556471.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554766.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..190
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..190
                     /product="vitelline membrane outer layer protein 1"
                     /calculated_mol_wt=20736
     Region          29..182
                     /region_name="VOMI"
                     /note="Vitelline membrane outer layer protein I (VOMI);
                     pfam03762"
                     /db_xref="CDD:427492"
     Site            order(37,59,66..67,112,119..120,163,170..171)
                     /site_type="other"
                     /note="putative carbohydrate binding site [chemical
                     binding]"
                     /db_xref="CDD:238135"
     CDS             1..190
                     /gene="LOC104055361"
                     /coded_by="XM_009556471.2:115..687"
                     /db_xref="GeneID:104055361"
ORIGIN      
        1 mkfftpatli llhslctlgt tvreyssvlt vpngghwgkw grqqfcrygy angfalkvep
       61 sgfgrddtal ngirlrcqdd siiessvgkw gtwtsyqicp kghlisfslr teesqgegdd
      121 taanniqfkc ldetvligdg lswgtfgsws kscnicglqt kveppqgfgd dtalnnvrff
      181 cckqaltpss
//
LOCUS       XP_053937332             550 aa            linear   VRT 09-MAR-2023
DEFINITION  stromelysin-1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053937332
VERSION     XP_053937332.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081357.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..550
                     /product="stromelysin-1 isoform X1"
                     /calculated_mol_wt=61989
     Region          29..83
                     /region_name="PG_binding_1"
                     /note="Putative peptidoglycan binding domain; pfam01471"
                     /db_xref="CDD:460223"
     Region          107..262
                     /region_name="Peptidase_M10"
                     /note="Matrixin; pfam00413"
                     /db_xref="CDD:425668"
     Region          289..446
                     /region_name="HX"
                     /note="Hemopexin-like repeats.; Hemopexin is a
                     heme-binding protein that transports heme to the liver.
                     Hemopexin-like repeats occur in vitronectin and some
                     matrix metalloproteinases family (matrixins). The HX
                     repeats of some matrixins bind tissue inhibitor of...;
                     cd00094"
                     /db_xref="CDD:238046"
     Site            order(299,301,343,345,391,393,439,441)
                     /site_type="metal-binding"
                     /note="Metal binding sites [ion binding]"
                     /db_xref="CDD:238046"
     CDS             1..550
                     /gene="LOC104055008"
                     /coded_by="XM_054081357.1:182..1834"
                     /db_xref="GeneID:104055008"
ORIGIN      
        1 mrmenlpfll llcaalshaf padrrqkkeg mqliqkylen yygfkkdges fiwksnssmt
       61 kkikemqeff glevtgklds gtlhlvqkrr cgfpdiagfs tfagepkwak qvltyrilny
      121 tpdprpadvn aaikkalnvw ssvtplkfik kdrgdadimi sfaagghndf ipfdgpggsv
      181 ahayapgkdf ggdahfdede twtkstedtn lfyvaahefg hslglfhskd pnalmypiyr
      241 kfdpsvfllh qddingiqhl ygpssnthnd qsesaeikdt teaeepalpn tcspdltfda
      301 vtsfrgellf fkdkrfwrkh pavrtadlhl issfwprlps gvdaayeipe kdetvifkgn
      361 efwvvrgdti lpgypkkiyt lgfskdvtki daafynvnee kiyyfigdnf lsydkrsqtm
      421 gskltlirda fpgingkida afqhenlfcr smqkhgsllt tsfsarftfa qfvrqlpgle
      481 lkdfkmvrlt sqgipepvch hgnpawhatk qipspgkssa setknviwlp vclgnrclaw
      541 kvallpcsfy
//
LOCUS       XP_053937338             498 aa            linear   VRT 09-MAR-2023
DEFINITION  stromelysin-1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053937338
VERSION     XP_053937338.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081363.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..498
                     /product="stromelysin-1 isoform X2"
                     /calculated_mol_wt=56601
     Region          29..83
                     /region_name="PG_binding_1"
                     /note="Putative peptidoglycan binding domain; pfam01471"
                     /db_xref="CDD:460223"
     Region          107..262
                     /region_name="Peptidase_M10"
                     /note="Matrixin; pfam00413"
                     /db_xref="CDD:425668"
     Region          289..446
                     /region_name="HX"
                     /note="Hemopexin-like repeats.; Hemopexin is a
                     heme-binding protein that transports heme to the liver.
                     Hemopexin-like repeats occur in vitronectin and some
                     matrix metalloproteinases family (matrixins). The HX
                     repeats of some matrixins bind tissue inhibitor of...;
                     cd00094"
                     /db_xref="CDD:238046"
     Site            order(299,301,343,345,391,393,439,441)
                     /site_type="metal-binding"
                     /note="Metal binding sites [ion binding]"
                     /db_xref="CDD:238046"
     CDS             1..498
                     /gene="LOC104055008"
                     /coded_by="XM_054081363.1:182..1678"
                     /db_xref="GeneID:104055008"
ORIGIN      
        1 mrmenlpfll llcaalshaf padrrqkkeg mqliqkylen yygfkkdges fiwksnssmt
       61 kkikemqeff glevtgklds gtlhlvqkrr cgfpdiagfs tfagepkwak qvltyrilny
      121 tpdprpadvn aaikkalnvw ssvtplkfik kdrgdadimi sfaagghndf ipfdgpggsv
      181 ahayapgkdf ggdahfdede twtkstedtn lfyvaahefg hslglfhskd pnalmypiyr
      241 kfdpsvfllh qddingiqhl ygpssnthnd qsesaeikdt teaeepalpn tcspdltfda
      301 vtsfrgellf fkdkrfwrkh pavrtadlhl issfwprlps gvdaayeipe kdetvifkgn
      361 efwvvrgdti lpgypkkiyt lgfskdvtki daafynvnee kiyyfigdnf lsydkrsqtm
      421 gskltlirda fpgingkida afqhensqks qlsfmeffqs slclnpntll qlrpcprwqe
      481 ykhyftsyty gnpvctfq
//
LOCUS       XP_053937343             492 aa            linear   VRT 09-MAR-2023
DEFINITION  stromelysin-1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053937343
VERSION     XP_053937343.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081368.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..492
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..492
                     /product="stromelysin-1 isoform X3"
                     /calculated_mol_wt=55163
     Region          <1..25
                     /region_name="PG_binding_1"
                     /note="Putative peptidoglycan binding domain; pfam01471"
                     /db_xref="CDD:460223"
     Region          49..204
                     /region_name="Peptidase_M10"
                     /note="Matrixin; pfam00413"
                     /db_xref="CDD:425668"
     Region          231..388
                     /region_name="HX"
                     /note="Hemopexin-like repeats.; Hemopexin is a
                     heme-binding protein that transports heme to the liver.
                     Hemopexin-like repeats occur in vitronectin and some
                     matrix metalloproteinases family (matrixins). The HX
                     repeats of some matrixins bind tissue inhibitor of...;
                     cd00094"
                     /db_xref="CDD:238046"
     Site            order(241,243,285,287,333,335,381,383)
                     /site_type="metal-binding"
                     /note="Metal binding sites [ion binding]"
                     /db_xref="CDD:238046"
     CDS             1..492
                     /gene="LOC104055008"
                     /coded_by="XM_054081368.1:648..2126"
                     /db_xref="GeneID:104055008"
ORIGIN      
        1 mtkkikemqe ffglevtgkl dsgtlhlvqk rrcgfpdiag fstfagepkw akqvltyril
       61 nytpdprpad vnaaikkaln vwssvtplkf ikkdrgdadi misfaagghn dfipfdgpgg
      121 svahayapgk dfggdahfde detwtksted tnlfyvaahe fghslglfhs kdpnalmypi
      181 yrkfdpsvfl lhqddingiq hlygpssnth ndqsesaeik dtteaeepal pntcspdltf
      241 davtsfrgel lffkdkrfwr khpavrtadl hlissfwprl psgvdaayei pekdetvifk
      301 gnefwvvrgd tilpgypkki ytlgfskdvt kidaafynvn eekiyyfigd nflsydkrsq
      361 tmgskltlir dafpgingki daafqhenlf crsmqkhgsl lttsfsarft faqfvrqlpg
      421 lelkdfkmvr ltsqgipepv chhgnpawha tkqipspgks sasetknviw lpvclgnrcl
      481 awkvallpcs fy
//
LOCUS       XP_009554385             478 aa            linear   VRT 09-MAR-2023
DEFINITION  stromelysin-1 isoform X4 [Cuculus canorus].
ACCESSION   XP_009554385
VERSION     XP_009554385.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556090.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554385.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..478
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..478
                     /product="stromelysin-1 isoform X4"
                     /calculated_mol_wt=54396
     Region          29..83
                     /region_name="PG_binding_1"
                     /note="Putative peptidoglycan binding domain; pfam01471"
                     /db_xref="CDD:460223"
     Region          107..262
                     /region_name="Peptidase_M10"
                     /note="Matrixin; pfam00413"
                     /db_xref="CDD:425668"
     Region          289..478
                     /region_name="HX"
                     /note="Hemopexin-like repeats.; Hemopexin is a
                     heme-binding protein that transports heme to the liver.
                     Hemopexin-like repeats occur in vitronectin and some
                     matrix metalloproteinases family (matrixins). The HX
                     repeats of some matrixins bind tissue inhibitor of...;
                     cd00094"
                     /db_xref="CDD:238046"
     Site            order(299,301,343,345,391,393,439,441)
                     /site_type="metal-binding"
                     /note="Metal binding sites [ion binding]"
                     /db_xref="CDD:238046"
     CDS             1..478
                     /gene="LOC104055008"
                     /coded_by="XM_009556090.2:182..1618"
                     /db_xref="GeneID:104055008"
ORIGIN      
        1 mrmenlpfll llcaalshaf padrrqkkeg mqliqkylen yygfkkdges fiwksnssmt
       61 kkikemqeff glevtgklds gtlhlvqkrr cgfpdiagfs tfagepkwak qvltyrilny
      121 tpdprpadvn aaikkalnvw ssvtplkfik kdrgdadimi sfaagghndf ipfdgpggsv
      181 ahayapgkdf ggdahfdede twtkstedtn lfyvaahefg hslglfhskd pnalmypiyr
      241 kfdpsvfllh qddingiqhl ygpssnthnd qsesaeikdt teaeepalpn tcspdltfda
      301 vtsfrgellf fkdkrfwrkh pavrtadlhl issfwprlps gvdaayeipe kdetvifkgn
      361 efwvvrgdti lpgypkkiyt lgfskdvtki daafynvnee kiyyfigdnf lsydkrsqtm
      421 gskltlirda fpgingkida afqhenffyf flgrkqfefd pdnktvtrll ktnfwfpc
//
LOCUS       XP_053937359             456 aa            linear   VRT 09-MAR-2023
DEFINITION  stromelysin-1 isoform X5 [Cuculus canorus].
ACCESSION   XP_053937359
VERSION     XP_053937359.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081384.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..456
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..456
                     /product="stromelysin-1 isoform X5"
                     /calculated_mol_wt=51560
     Region          29..83
                     /region_name="PG_binding_1"
                     /note="Putative peptidoglycan binding domain; pfam01471"
                     /db_xref="CDD:460223"
     Region          107..262
                     /region_name="Peptidase_M10"
                     /note="Matrixin; pfam00413"
                     /db_xref="CDD:425668"
     Region          289..445
                     /region_name="HX"
                     /note="Hemopexin-like repeats.; Hemopexin is a
                     heme-binding protein that transports heme to the liver.
                     Hemopexin-like repeats occur in vitronectin and some
                     matrix metalloproteinases family (matrixins). The HX
                     repeats of some matrixins bind tissue inhibitor of...;
                     cd00094"
                     /db_xref="CDD:238046"
     Site            order(299,301,343,345,391,393,439,441)
                     /site_type="metal-binding"
                     /note="Metal binding sites [ion binding]"
                     /db_xref="CDD:238046"
     CDS             1..456
                     /gene="LOC104055008"
                     /coded_by="XM_054081384.1:182..1552"
                     /db_xref="GeneID:104055008"
ORIGIN      
        1 mrmenlpfll llcaalshaf padrrqkkeg mqliqkylen yygfkkdges fiwksnssmt
       61 kkikemqeff glevtgklds gtlhlvqkrr cgfpdiagfs tfagepkwak qvltyrilny
      121 tpdprpadvn aaikkalnvw ssvtplkfik kdrgdadimi sfaagghndf ipfdgpggsv
      181 ahayapgkdf ggdahfdede twtkstedtn lfyvaahefg hslglfhskd pnalmypiyr
      241 kfdpsvfllh qddingiqhl ygpssnthnd qsesaeikdt teaeepalpn tcspdltfda
      301 vtsfrgellf fkdkrfwrkh pavrtadlhl issfwprlps gvdaayeipe kdetvifkgn
      361 efwvvrgdti lpgypkkiyt lgfskdvtki daafynvnee kiyyfigdnf lsydkrsqtm
      421 gskltlirda fpgingkida afqheififq thknps
//
LOCUS       XP_053937367             452 aa            linear   VRT 09-MAR-2023
DEFINITION  stromelysin-1 isoform X6 [Cuculus canorus].
ACCESSION   XP_053937367
VERSION     XP_053937367.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081392.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..452
                     /product="stromelysin-1 isoform X6"
                     /calculated_mol_wt=51045
     Region          29..83
                     /region_name="PG_binding_1"
                     /note="Putative peptidoglycan binding domain; pfam01471"
                     /db_xref="CDD:460223"
     Region          107..262
                     /region_name="Peptidase_M10"
                     /note="Matrixin; pfam00413"
                     /db_xref="CDD:425668"
     Region          289..446
                     /region_name="HX"
                     /note="Hemopexin-like repeats.; Hemopexin is a
                     heme-binding protein that transports heme to the liver.
                     Hemopexin-like repeats occur in vitronectin and some
                     matrix metalloproteinases family (matrixins). The HX
                     repeats of some matrixins bind tissue inhibitor of...;
                     cd00094"
                     /db_xref="CDD:238046"
     Site            order(299,301,343,345,391,393,439,441)
                     /site_type="metal-binding"
                     /note="Metal binding sites [ion binding]"
                     /db_xref="CDD:238046"
     CDS             1..452
                     /gene="LOC104055008"
                     /coded_by="XM_054081392.1:182..1540"
                     /db_xref="GeneID:104055008"
ORIGIN      
        1 mrmenlpfll llcaalshaf padrrqkkeg mqliqkylen yygfkkdges fiwksnssmt
       61 kkikemqeff glevtgklds gtlhlvqkrr cgfpdiagfs tfagepkwak qvltyrilny
      121 tpdprpadvn aaikkalnvw ssvtplkfik kdrgdadimi sfaagghndf ipfdgpggsv
      181 ahayapgkdf ggdahfdede twtkstedtn lfyvaahefg hslglfhskd pnalmypiyr
      241 kfdpsvfllh qddingiqhl ygpssnthnd qsesaeikdt teaeepalpn tcspdltfda
      301 vtsfrgellf fkdkrfwrkh pavrtadlhl issfwprlps gvdaayeipe kdetvifkgn
      361 efwvvrgdti lpgypkkiyt lgfskdvtki daafynvnee kiyyfigdnf lsydkrsqtm
      421 gskltlirda fpgingkida afqhenvlkd tq
//
LOCUS       XP_009554379             466 aa            linear   VRT 09-MAR-2023
DEFINITION  interstitial collagenase [Cuculus canorus].
ACCESSION   XP_009554379
VERSION     XP_009554379.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556084.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554379.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..466
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..466
                     /product="interstitial collagenase"
                     /calculated_mol_wt=53293
     Region          26..87
                     /region_name="PG_binding_1"
                     /note="Putative peptidoglycan binding domain; pfam01471"
                     /db_xref="CDD:460223"
     Region          108..263
                     /region_name="Peptidase_M10"
                     /note="Matrixin; pfam00413"
                     /db_xref="CDD:425668"
     Region          277..466
                     /region_name="HX"
                     /note="Hemopexin-like repeats.; Hemopexin is a
                     heme-binding protein that transports heme to the liver.
                     Hemopexin-like repeats occur in vitronectin and some
                     matrix metalloproteinases family (matrixins). The HX
                     repeats of some matrixins bind tissue inhibitor of...;
                     cd00094"
                     /db_xref="CDD:238046"
     Site            order(287,289,331,333,379,381,427,429)
                     /site_type="metal-binding"
                     /note="Metal binding sites [ion binding]"
                     /db_xref="CDD:238046"
     CDS             1..466
                     /gene="LOC104055002"
                     /coded_by="XM_009556084.2:92..1492"
                     /db_xref="GeneID:104055002"
ORIGIN      
        1 mktlslllll cvavssafpv apeaenerkt lqlvesylqn fydlqkdhhp hlrttgenpl
       61 aeklkemqef fglevtgkpd ldtleimkkp rcgvpdagqy vfttgnpkwk rnhltyriln
      121 ytpkmrqadv ekaiqkalsv wsnvtplrfe kvdnkeadim isfayrdhyd nspfdgpngq
      181 lahafqpgeg iggdvhldee eawskdgrgy nlfivvahel ghslglshsn dpgalmypty
      241 sytdpkefll pqddidgiqa iygqssaavq ptgpvtpqac dpnltfdaia tlrgeiiffk
      301 grymlrkhpa raetelnfis lfwpklpsgi qaayenvend evllfkedky wvlrgydiap
      361 gypkpiyrlg fpktvkrvna ayndettgkt yffiadrywr ydenkksmdh gyprkivsdf
      421 gkigrvdavf qkdgyvyffh rttqfqydpr akqivrqmks iswfnc
//
LOCUS       XP_053937393             821 aa            linear   VRT 09-MAR-2023
DEFINITION  conserved oligomeric Golgi complex subunit 3 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053937393
VERSION     XP_053937393.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081418.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..821
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..821
                     /product="conserved oligomeric Golgi complex subunit 3
                     isoform X1"
                     /calculated_mol_wt=93178
     Region          124..267
                     /region_name="Sec34"
                     /note="Sec34-like family; pfam04136"
                     /db_xref="CDD:461190"
     CDS             1..821
                     /gene="COG3"
                     /coded_by="XM_054081418.1:69..2534"
                     /db_xref="GeneID:104056528"
ORIGIN      
        1 maeppappae lrdrlslwdr rqqpaaplsd rqtdsvlelk aaaenlpvpp elpiedlcsl
       61 tsqsltvtlt aavpestedv llkgfavlgm ederietaqq ffswfaqvqt qmdqdegaky
      121 rqmrdylsgf qeqcdailnd vnsalqhles lqkqylfvst ktgtlheace qllkeqselv
      181 dlaeniqqkl syfnelenin tklnsptlsv nsegfipmla klddciayis shpnfkdcpv
      241 ylmkfkqcls kamhliktyt vntlqnltsq lmkrdpsavp nsdnaftlfy vkfraaapkv
      301 rtlieqveqr sekmpeyqqv lneihqcyld qrelllgpsi astvteltsq nnrdhcalvr
      361 sgcafmvhvc qdehqlfnef ftkptpklde lleklclsly dvlrpmiihv ihletlselc
      421 gilknemled hvqnnaeqlg afaagvkqml edvqerlvyr thiyiqtdit gykpapgdla
      481 ypdklemmeq iaqslkeeqk klpseasfsd vrledpescg ltksgsaesl nprhqptisp
      541 adlhgmwypt vrrtlvclsk lyrcidravf qglsqealsa cihsllgaad sisknktqvd
      601 gqlflikhll ilreqiapfh tdftikeisl dlkktrdaaf kilnpkavsr ffrlnsnnal
      661 iqfllegtpe irehyidskk dvdrhlksac eqfiqqqtkq fieqleefmt kvaalktmat
      721 qggpkyslsq qpwaqpakin dlvsstykti ktklpstlrs mslylsnkdt elilfkpvkn
      781 niqqmfqklh allkeefnde dlqiiacpsm eqvnlllsms k
//
LOCUS       XP_053937399             779 aa            linear   VRT 09-MAR-2023
DEFINITION  conserved oligomeric Golgi complex subunit 3 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053937399
VERSION     XP_053937399.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081424.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..779
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..779
                     /product="conserved oligomeric Golgi complex subunit 3
                     isoform X2"
                     /calculated_mol_wt=88219
     Region          124..>232
                     /region_name="Sec34"
                     /note="Sec34-like family; pfam04136"
                     /db_xref="CDD:461190"
     CDS             1..779
                     /gene="COG3"
                     /coded_by="XM_054081424.1:69..2408"
                     /db_xref="GeneID:104056528"
ORIGIN      
        1 maeppappae lrdrlslwdr rqqpaaplsd rqtdsvlelk aaaenlpvpp elpiedlcsl
       61 tsqsltvtlt aavpestedv llkgfavlgm ederietaqq ffswfaqvqt qmdqdegaky
      121 rqmrdylsgf qeqcdailnd vnsalqhles lqkqylfvst ktgtlheace qllkeqselv
      181 dlaeniqqkl syfnelenin tklnsptlsv nsegfipmla klddciayis shdpsavpns
      241 dnaftlfyvk fraaapkvrt lieqveqrse kmpeyqqvln eihqcyldqr elllgpsias
      301 tvteltsqnn rdhcalvrsg cafmvhvcqd ehqlfnefft kptpkldell eklclslydv
      361 lrpmiihvih letlselcgi lknemledhv qnnaeqlgaf aagvkqmled vqerlvyrth
      421 iyiqtditgy kpapgdlayp dklemmeqia qslkeeqkkl pseasfsdvr ledpescglt
      481 ksgsaeslnp rhqptispad lhgmwyptvr rtlvclskly rcidravfqg lsqealsaci
      541 hsllgaadsi sknktqvdgq lflikhllil reqiapfhtd ftikeisldl kktrdaafki
      601 lnpkavsrff rlnsnnaliq fllegtpeir ehyidskkdv drhlksaceq fiqqqtkqfi
      661 eqleefmtkv aalktmatqg gpkyslsqqp waqpakindl vsstyktikt klpstlrsms
      721 lylsnkdtel ilfkpvknni qqmfqklhal lkeefndedl qiiacpsmeq vnlllsmsk
//
LOCUS       XP_053937408             699 aa            linear   VRT 09-MAR-2023
DEFINITION  conserved oligomeric Golgi complex subunit 3 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053937408
VERSION     XP_053937408.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081433.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..699
                     /product="conserved oligomeric Golgi complex subunit 3
                     isoform X3"
                     /calculated_mol_wt=79613
     Region          2..145
                     /region_name="Sec34"
                     /note="Sec34-like family; pfam04136"
                     /db_xref="CDD:461190"
     CDS             1..699
                     /gene="COG3"
                     /coded_by="XM_054081433.1:59..2158"
                     /db_xref="GeneID:104056528"
ORIGIN      
        1 mrdylsgfqe qcdailndvn salqhleslq kqylfvstkt gtlheaceql lkeqselvdl
       61 aeniqqklsy fnelenintk lnsptlsvns egfipmlakl ddciayissh pnfkdcpvyl
      121 mkfkqclska mhliktytvn tlqnltsqlm krdpsavpns dnaftlfyvk fraaapkvrt
      181 lieqveqrse kmpeyqqvln eihqcyldqr elllgpsias tvteltsqnn rdhcalvrsg
      241 cafmvhvcqd ehqlfnefft kptpkldell eklclslydv lrpmiihvih letlselcgi
      301 lknemledhv qnnaeqlgaf aagvkqmled vqerlvyrth iyiqtditgy kpapgdlayp
      361 dklemmeqia qslkeeqkkl pseasfsdvr ledpescglt ksgsaeslnp rhqptispad
      421 lhgmwyptvr rtlvclskly rcidravfqg lsqealsaci hsllgaadsi sknktqvdgq
      481 lflikhllil reqiapfhtd ftikeisldl kktrdaafki lnpkavsrff rlnsnnaliq
      541 fllegtpeir ehyidskkdv drhlksaceq fiqqqtkqfi eqleefmtkv aalktmatqg
      601 gpkyslsqqp waqpakindl vsstyktikt klpstlrsms lylsnkdtel ilfkpvknni
      661 qqmfqklhal lkeefndedl qiiacpsmeq vnlllsmsk
//
LOCUS       XP_053937420             103 aa            linear   VRT 09-MAR-2023
DEFINITION  mitochondrial import inner membrane translocase subunit Tim10 B
            [Cuculus canorus].
ACCESSION   XP_053937420
VERSION     XP_053937420.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081445.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..103
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..103
                     /product="mitochondrial import inner membrane translocase
                     subunit Tim10 B"
                     /calculated_mol_wt=11454
     Region          6..67
                     /region_name="zf-Tim10_DDP"
                     /note="Tim10/DDP family zinc finger; pfam02953"
                     /db_xref="CDD:460764"
     CDS             1..103
                     /gene="TIMM10B"
                     /coded_by="XM_054081445.1:64..375"
                     /db_xref="GeneID:128853806"
ORIGIN      
        1 meseaeqqqq lrslrgflla ynqlsqlcfq rcvcglghrl lsareercvd gcagkllras
       61 hrllsayvgl mpalterrra ppaqhpteat ettepepepr rpa
//
LOCUS       XP_053937433             492 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: transcriptional coactivator YAP1 [Cuculus
            canorus].
ACCESSION   XP_053937433
VERSION     XP_053937433.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081458.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..492
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..492
                     /product="LOW QUALITY PROTEIN: transcriptional coactivator
                     YAP1"
                     /calculated_mol_wt=53010
     Region          160..191
                     /region_name="WW"
                     /note="Domain with 2 conserved Trp (W) residues;
                     smart00456"
                     /db_xref="CDD:197736"
     Site            order(176,187)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          219..251
                     /region_name="WW"
                     /note="Domain with 2 conserved Trp (W) residues;
                     smart00456"
                     /db_xref="CDD:197736"
     Site            order(235,246)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     CDS             1..492
                     /gene="YAP1"
                     /coded_by="XM_054081458.1:273..1751"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon"
                     /db_xref="GeneID:104054971"
ORIGIN      
        1 mdpgqpqqpq aaqppapqqp pgappgpaqt pgsgpxppag hqvvhvrgds etdlealfna
       61 vmnpkganvp htlpmrlrkl pdsffkppep kahsrqastd agtagaltpq hvrahsspas
      121 lqlgavspgt ltpsgvvtgp gapssqhlrq ssfeipddvp lppgwemakt psgqryflnh
      181 idqtttwqdp rkamlsqmnv taptspsvqq nimnsasgpl pdgweqamtq dgeiyyinhk
      241 nkttswldpr ldprfamnqr isqsapvkqp pplapqspqg gvmggsssnq qqqmrlqqlq
      301 mekerlrlkh qellrqalrn inpstanspk hqelalrsql ptmeqdggsq npvsspgmsq
      361 elrtmttnss dpflnsgtyh srdestdsgl smssysvprt pddflnsvde mdtgdsisqs
      421 nipshqnrfp dyleaipgtn vdlgtlegdg mniegeelmp slqealssdi lndmesvlaa
      481 tkldkesflt wl
//
LOCUS       XP_053937446            1698 aa            linear   VRT 09-MAR-2023
DEFINITION  GRIP and coiled-coil domain-containing protein 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053937446
VERSION     XP_053937446.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081471.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1698
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1698
                     /product="GRIP and coiled-coil domain-containing protein 2
                     isoform X1"
                     /calculated_mol_wt=196358
     Region          96..848
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          543..1408
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          1562..1626
                     /region_name="Rab_bind"
                     /note="Rab binding domain; pfam16704"
                     /db_xref="CDD:435531"
     Region          1628..1670
                     /region_name="GRIP"
                     /note="GRIP domain; pfam01465"
                     /db_xref="CDD:460221"
     CDS             1..1698
                     /gene="GCC2"
                     /coded_by="XM_054081471.1:104..5200"
                     /db_xref="GeneID:104056680"
ORIGIN      
        1 mevqdagqem vassvtpgsg kskldtlpke dlikfakkqv mlvqkvksrc telekeieel
       61 rskaatggad diiqalterl dvvllekaes qqqclslkke niqrkqeaea avtkteelqk
      121 qldqsntdsl keiealksel anaqckyndd ltklkielee qvkkqmglle qieclrdsek
      181 everlqddvq rikstyegqi lclskqletv nedkakevtn lqetiksnsq cyyneinnln
      241 eelkkikvah qeevselmhr leisskenee kqnqinwlqr nlaeeglike knvqdemcac
      301 adqreydlqq lrevlnknve snidivdtqe epceevkmee kvrhlehsle elqsqhsilk
      361 deltymsnvk lkleeeihri kdeyfhered ldfkinelql tkedycsvie klklelqaar
      421 ehyetavkah qletrtlkeq hqreiselne tlisdseken malvfemqel reqlekltqe
      481 keeavsnyss lreametlqt elgesagkis qkfesmrqqq asdvselqqk lraafnekda
      541 lletvnrlqk eteklssnql eieelkckiv slqeenstik ssisqkeaam keleeniial
      601 tdrnkdisne akclseeret lqerckqeqg kiqelqqevd vsnqynsdlk kkveelterl
      661 nealagnien artleqlenn iecllreren lsteaytlre eskkiiqeke rlseelekfi
      721 sekdgwlvlk eqsenlekkl qmmtaekdql salleservh rslvrtqlyh lleqvgssvl
      781 dsneeydsln lleianecwa kvkeeqclal qneekvlnlq reverleeen aaqdtehrsl
      841 iedfekeknv lreelegals ekealqhdvl elknasektr tenqdllani ekmtqklaly
      901 esqlqeqqkg sekqddlsfv leqketelrn vkdelsslkn lmetltektd qessvadlqe
      961 kigrlekesa ekgeklnkik ivavkakkel dasrkemqtl reeldlvrse kdqlsasmkd
     1021 viqgaesykn llmeydkqge eldlekgkan slehqiddlm rqlqvssqeh dqlqsvnedl
     1081 larvetlqhn aklleaqile iqrakakadk eletekllke qktkehsgal reveelqmql
     1141 qkekkhlqkt mqelelarkd aqkstlmdme iadyerlvke lnqkitdkds riedleqetg
     1201 iqkqkqetlq eeikslqstm qqdeernaki kqllvktkke ladskqaend hlmlqaslkg
     1261 eleasqqqve aykiqvavlt sekhkvqehl rtsseqhqrt lsayqqkiaa lqeecraaqa
     1321 eqasvtsefe sykvrvhnvl kqqknksasq aesegakqer eqlemvidql kvklqdalhn
     1381 sqmnaselha lqsehdtlle rhnkmlqetv akeaelrekf ctiqsenmvm ktehaqmlsq
     1441 ltaqnealrn nfrdqvrnlq eehrktvetl qqqlsrveaq lfqlksepss remylsgpav
     1501 snpatknlre rrntdlpvld vhtvareege gmettdtesv ssastyvpsl eqllnspeak
     1561 lepsqwqtel tkdeliqkln tttksadhln ellreseatn ailmeqikll knevrrlern
     1621 qereksvanl eylknvllqf iflksgseke rllpvidtml qlspeekgkl vaiaqgeees
     1681 tsrpsgwasy lhswsglr
//
LOCUS       XP_053937455            1693 aa            linear   VRT 09-MAR-2023
DEFINITION  GRIP and coiled-coil domain-containing protein 2 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053937455
VERSION     XP_053937455.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081480.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1693
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1693
                     /product="GRIP and coiled-coil domain-containing protein 2
                     isoform X2"
                     /calculated_mol_wt=195735
     Region          96..848
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          543..1408
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          1557..1621
                     /region_name="Rab_bind"
                     /note="Rab binding domain; pfam16704"
                     /db_xref="CDD:435531"
     Region          1623..1665
                     /region_name="GRIP"
                     /note="GRIP domain; pfam01465"
                     /db_xref="CDD:460221"
     CDS             1..1693
                     /gene="GCC2"
                     /coded_by="XM_054081480.1:104..5185"
                     /db_xref="GeneID:104056680"
ORIGIN      
        1 mevqdagqem vassvtpgsg kskldtlpke dlikfakkqv mlvqkvksrc telekeieel
       61 rskaatggad diiqalterl dvvllekaes qqqclslkke niqrkqeaea avtkteelqk
      121 qldqsntdsl keiealksel anaqckyndd ltklkielee qvkkqmglle qieclrdsek
      181 everlqddvq rikstyegqi lclskqletv nedkakevtn lqetiksnsq cyyneinnln
      241 eelkkikvah qeevselmhr leisskenee kqnqinwlqr nlaeeglike knvqdemcac
      301 adqreydlqq lrevlnknve snidivdtqe epceevkmee kvrhlehsle elqsqhsilk
      361 deltymsnvk lkleeeihri kdeyfhered ldfkinelql tkedycsvie klklelqaar
      421 ehyetavkah qletrtlkeq hqreiselne tlisdseken malvfemqel reqlekltqe
      481 keeavsnyss lreametlqt elgesagkis qkfesmrqqq asdvselqqk lraafnekda
      541 lletvnrlqk eteklssnql eieelkckiv slqeenstik ssisqkeaam keleeniial
      601 tdrnkdisne akclseeret lqerckqeqg kiqelqqevd vsnqynsdlk kkveelterl
      661 nealagnien artleqlenn iecllreren lsteaytlre eskkiiqeke rlseelekfi
      721 sekdgwlvlk eqsenlekkl qmmtaekdql salleservh rslvrtqlyh lleqvgssvl
      781 dsneeydsln lleianecwa kvkeeqclal qneekvlnlq reverleeen aaqdtehrsl
      841 iedfekeknv lreelegals ekealqhdvl elknasektr tenqdllani ekmtqklaly
      901 esqlqeqqkg sekqddlsfv leqketelrn vkdelsslkn lmetltektd qessvadlqe
      961 kigrlekesa ekgeklnkik ivavkakkel dasrkemqtl reeldlvrse kdqlsasmkd
     1021 viqgaesykn llmeydkqge eldlekgkan slehqiddlm rqlqvssqeh dqlqsvnedl
     1081 larvetlqhn aklleaqile iqrakakadk eletekllke qktkehsgal reveelqmql
     1141 qkekkhlqkt mqelelarkd aqkstlmdme iadyerlvke lnqkitdkds riedleqetg
     1201 iqkqkqetlq eeikslqstm qqdeernaki kqllvktkke ladskqaend hlmlqaslkg
     1261 eleasqqqve aykiqvavlt sekhkvqehl rtsseqhqrt lsayqqkiaa lqeecraaqa
     1321 eqasvtsefe sykvrvhnvl kqqknksasq aesegakqer eqlemvidql kvklqdalhn
     1381 sqmnaselha lqsehdtlle rhnkmlqetv akeaelrekf ctiqsenmvm ktehaqmlsq
     1441 ltaqnealrn nfrdqvrnlq eehrktvetl qqqlsrveaq lfqlksepss rgpavsnpat
     1501 knlrerrntd lpvldvhtva reegegmett dtesvssast yvpsleqlln speaklepsq
     1561 wqteltkdel iqklntttks adhlnellre seatnailme qikllknevr rlernqerek
     1621 svanleylkn vllqfiflks gsekerllpv idtmlqlspe ekgklvaiaq geeestsrps
     1681 gwasylhsws glr
//
LOCUS       XP_053937465            1254 aa            linear   VRT 09-MAR-2023
DEFINITION  eukaryotic translation initiation factor 5B [Cuculus canorus].
ACCESSION   XP_053937465
VERSION     XP_053937465.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081490.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1254
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1254
                     /product="eukaryotic translation initiation factor 5B"
                     /calculated_mol_wt=141937
     Region          661..1236
                     /region_name="PRK04004"
                     /note="translation initiation factor IF-2; Validated;
                     cl44330"
                     /db_xref="CDD:457675"
     CDS             1..1254
                     /gene="EIF5B"
                     /coded_by="XM_054081490.1:16..3780"
                     /db_xref="GeneID:104056647"
ORIGIN      
        1 megsktrtnp diktrpcwdr sncrdhqppa dhaspltlrd rhqesakddi didalaaeie
       61 gagaakeqep qkskgkkkke kkkqdfdedd ilkeleelsi eaqggkvdre psagkvendn
      121 eeslskqdkk rkgkskkanl endydseeve dkdkkskkpq kakqdmvsgs ddddhetqik
      181 knkgktqksn kkqdlsedde tnikkskert rtastgesgd gsddasqsrk gqkknqkpks
      241 tpaaesgdde eepsfkvktv aqkkaekker erkkreeeka klrkqkekee leggkepakp
      301 kevpkkaeek gsevmaapgp gekgeapagt eaddnegdkk kkdkkkkkge keekekekek
      361 kkgpskatvk amqealakmk eeeerarree eerirrleel eakrkeeerl eqerkerkkq
      421 kekerkerlk kegklltkaq reararaeat lkllqaqgve vpskdsvpkk rpiyedkkkk
      481 kqqqpenkee svevtspaed aveletpvke etplpvepvl eekeeeeves edgglddwea
      541 mvsdedgeke skpvhievke qnevdeeeee eedeeeeeee teesedsegs ededektsde
      601 retdsqaigk qsmdkklske issdseydsd ddrtkeeray dkakrriekr raensknvnt
      661 eklrapvicv lghvdtgktk ildklrhthv qdseaggitq qigatnvple aineqtkmvk
      721 nfdrenikip gmliidtpgh esfsnlrnrg sslcdiailv vdimhglepq tiesinllks
      781 kkcpfivaln kidrlydwkk spdtdvavtl kkqkkntkde feerakaiiv efakqglnaa
      841 lyyenkdprt fvslvptsah tgdgmgslia llveltqtml tkrlaecqel raqvmevkal
      901 pgmgttidvi lingrlkegd tiivpgvegp ivtqirglll pppmkelrvk nqyekhkevv
      961 aaqgvkilgk dlektlaglp llvaykedev pvlkdelihe lkqtlnaikl eekgvyvqas
     1021 tlgslealle flktsevpys ginigpvhkk dvmkasvmle hdpqyavila fdvrierdaq
     1081 emadslgvri fsaeiiyhlf daftkyrqdy kkqkqeefkh iavfpckmki lpqfifnsrd
     1141 pivmgvvvea gqvkqgtpmc vpsknfvdig ivtsieinhk pvevakkgqe vcvkiepipg
     1201 espkmygrhf eatdilvski srqsidalkd wfrdemqksd wqlivelkkv feii
//
LOCUS       XP_009561681             149 aa            linear   VRT 09-MAR-2023
DEFINITION  calmodulin, striated muscle [Cuculus canorus].
ACCESSION   XP_009561681
VERSION     XP_009561681.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563386.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..149
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..149
                     /product="calmodulin, striated muscle"
                     /calculated_mol_wt=16852
     Region          1..149
                     /region_name="PTZ00184"
                     /note="calmodulin; Provisional"
                     /db_xref="CDD:185504"
     CDS             1..149
                     /gene="LOC104061442"
                     /coded_by="XM_009563386.2:82..531"
                     /db_xref="GeneID:104061442"
ORIGIN      
        1 maerlseeki aefkeafslf drdgdgcitt kelgtvmrsl gqnpteaelq dmvgevdadn
       61 sgtidfpefl slmarkmrdt dseeeireaf rvfdkdgngy isvaelrhvm tnlgekltde
      121 evdemikead cnndgqvnye efvrmmtek
//
LOCUS       XP_053937482             719 aa            linear   VRT 09-MAR-2023
DEFINITION  BCLAF1 and THRAP3 family member 3 [Cuculus canorus].
ACCESSION   XP_053937482
VERSION     XP_053937482.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081507.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..719
                     /product="BCLAF1 and THRAP3 family member 3"
                     /calculated_mol_wt=85263
     Region          3..659
                     /region_name="THRAP3_BCLAF1"
                     /note="THRAP3/BCLAF1 family; pfam15440"
                     /db_xref="CDD:464718"
     CDS             1..719
                     /gene="BCLAF3"
                     /coded_by="XM_054081507.1:178..2337"
                     /db_xref="GeneID:104063384"
ORIGIN      
        1 mtrsrsrspr wkqrslspaf rspehhrqrh apvnydceyk sfrkdpkkpi twrtedekyg
       61 qsnsrfaphr nnhqriyerr spspnlkrip tedtynykpy rthssertes nrrcqlppky
      121 sdlpykehdr pfyqhkmeer ymfqhykvtg nekgmkpfhr plgasckler kwheddlrhq
      181 rlheekygqs prrvsdefta rsslqkrype dhdyreyght skrakemery dggevarnsk
      241 wkqersfppy qemeeernlv aqshrpaeke ysegsvtkia yeyghkrhrh vdgekpfsdd
      301 raqkyvkqed qkygsskgar nskeldyfss grarrteegh vevpvkyssk kgcnacvnss
      361 ktdvdlrsfk nkakervrke gefrkkvdss dsqhdpshtv sdvkvsdvnc rrehltikvd
      421 mkkmvtkyrt asshtterqm shdlvavgrk nenfhpvfeh mesvtqnven dpsreftqei
      481 itiihqvkan yftssditlh erfskiqakp vanmnevkih ldpeihrrid mslaelqnkr
      541 tvpsetpqni mrvledpndl rhdierrrke rlkneddrvf hvdgvtprnq qicslsklqn
      601 sqpdgfqkpm rfikppfrkf igrphlnsyy sskpsdtypy rrirghmena gpirrpfksn
      661 fadgrlqshy ksglvqkgly iqakyqrlrs vgvrgfttnr frdgflrkek gnlniatet
//
LOCUS       XP_053937495             719 aa            linear   VRT 09-MAR-2023
DEFINITION  BCLAF1 and THRAP3 family member 3 [Cuculus canorus].
ACCESSION   XP_053937495
VERSION     XP_053937495.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081520.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..719
                     /product="BCLAF1 and THRAP3 family member 3"
                     /calculated_mol_wt=85263
     Region          3..659
                     /region_name="THRAP3_BCLAF1"
                     /note="THRAP3/BCLAF1 family; pfam15440"
                     /db_xref="CDD:464718"
     CDS             1..719
                     /gene="BCLAF3"
                     /coded_by="XM_054081520.1:443..2602"
                     /db_xref="GeneID:104063384"
ORIGIN      
        1 mtrsrsrspr wkqrslspaf rspehhrqrh apvnydceyk sfrkdpkkpi twrtedekyg
       61 qsnsrfaphr nnhqriyerr spspnlkrip tedtynykpy rthssertes nrrcqlppky
      121 sdlpykehdr pfyqhkmeer ymfqhykvtg nekgmkpfhr plgasckler kwheddlrhq
      181 rlheekygqs prrvsdefta rsslqkrype dhdyreyght skrakemery dggevarnsk
      241 wkqersfppy qemeeernlv aqshrpaeke ysegsvtkia yeyghkrhrh vdgekpfsdd
      301 raqkyvkqed qkygsskgar nskeldyfss grarrteegh vevpvkyssk kgcnacvnss
      361 ktdvdlrsfk nkakervrke gefrkkvdss dsqhdpshtv sdvkvsdvnc rrehltikvd
      421 mkkmvtkyrt asshtterqm shdlvavgrk nenfhpvfeh mesvtqnven dpsreftqei
      481 itiihqvkan yftssditlh erfskiqakp vanmnevkih ldpeihrrid mslaelqnkr
      541 tvpsetpqni mrvledpndl rhdierrrke rlkneddrvf hvdgvtprnq qicslsklqn
      601 sqpdgfqkpm rfikppfrkf igrphlnsyy sskpsdtypy rrirghmena gpirrpfksn
      661 fadgrlqshy ksglvqkgly iqakyqrlrs vgvrgfttnr frdgflrkek gnlniatet
//
LOCUS       XP_009557988             259 aa            linear   VRT 09-MAR-2023
DEFINITION  integral membrane protein 2B isoform X1 [Cuculus canorus].
ACCESSION   XP_009557988
VERSION     XP_009557988.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009559693.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..259
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..259
                     /product="integral membrane protein 2B isoform X1"
                     /calculated_mol_wt=29508
     Region          129..223
                     /region_name="BRICHOS"
                     /note="The BRICHOS domain is found in a variety of
                     proteins implicated in dementia, respiratory distress and
                     cancer; smart01039"
                     /db_xref="CDD:198107"
     CDS             1..259
                     /gene="ITM2B"
                     /coded_by="XM_009559693.2:151..930"
                     /db_xref="GeneID:104058220"
ORIGIN      
        1 mvkvsfnsal sqkeaakkee ensqvlivpp kdpedavpvg qrrawcwcmc fglafmlagv
       61 ilggaylyky fafqqggvyf cgikyiedgl nlpesgaeaq saryhtieqn vqileeedve
      121 fisvpvpefa dsdpadivhd fhrrltayld lsldkcyvip lntsvvmppk nflellinik
      181 agtylpqsyl iheqmivtdr ienvdqlgff iyrlcrgket yklqrkeamk giqkreavnc
      241 rkirhfensf ametliceq
//
LOCUS       XP_053937518             258 aa            linear   VRT 09-MAR-2023
DEFINITION  integral membrane protein 2B isoform X2 [Cuculus canorus].
ACCESSION   XP_053937518
VERSION     XP_053937518.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081543.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..258
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..258
                     /product="integral membrane protein 2B isoform X2"
                     /calculated_mol_wt=29380
     Region          128..222
                     /region_name="BRICHOS"
                     /note="The BRICHOS domain is found in a variety of
                     proteins implicated in dementia, respiratory distress and
                     cancer; smart01039"
                     /db_xref="CDD:198107"
     CDS             1..258
                     /gene="ITM2B"
                     /coded_by="XM_054081543.1:153..929"
                     /db_xref="GeneID:104058220"
ORIGIN      
        1 mvkvsfnsal sqkeaakkee ensqvlivpp kdpedavpvg qrrawcwcmc fglafmlagv
       61 ilggaylyky fafqggvyfc gikyiedgln lpesgaeaqs aryhtieqnv qileeedvef
      121 isvpvpefad sdpadivhdf hrrltayldl sldkcyvipl ntsvvmppkn flellinika
      181 gtylpqsyli heqmivtdri envdqlgffi yrlcrgkety klqrkeamkg iqkreavncr
      241 kirhfensfa metliceq
//
LOCUS       XP_053937550             544 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein J2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053937550
VERSION     XP_053937550.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081575.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..544
                     /product="forkhead box protein J2 isoform X1"
                     /calculated_mol_wt=59974
     Region          65..146
                     /region_name="FH_FOXJ2"
                     /note="Forkhead (FH) domain found in Forkhead box protein
                     J2 (FOXJ2) and similar proteins; cd20051"
                     /db_xref="CDD:410825"
     Site            order(71,89..90,93,112..113,115..116,119,126,136..138,140)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410825"
     CDS             1..544
                     /gene="FOXJ2"
                     /coded_by="XM_054081575.1:791..2425"
                     /db_xref="GeneID:104060638"
ORIGIN      
        1 masdlesslt sidwlpqltl ratieklggs sqagppgtar kcppgsptdp natlskdeaa
       61 vhqdgkprys yatlityain sspakkmtls eiyrwicdnf pyyknagigw knsirhnlsl
      121 nkcfrkvprp rddpgkgsyw tidtcpdisr krrhppdddi pqdspeqeas ksprgavpvs
      181 teaslppeat pqlslqsttp ianysqqgag pvdvastvag gqgregadvp pplysanhdf
      241 kfsyseinfq dlswsfrnly ksmlekssss qhgfssllgd mqpsnhnyym yqqqqqqgps
      301 svsaapalht ptpegcpsqg gkqqggegyg pppvmsmhpp pmqhggyhqh qqhhphshpq
      361 qqphqhqqqq qsqasinnag fafppdwcsn idslkesfkm vnrlnwssie hsqfselmes
      421 lrqaerknwt ldqhhianlc dslnhfltqt gqlphlvgpq qpprisdsca lnsgkqeqsm
      481 nqvnsygqpq pphlfsgpsp myqistqdsp gynrpahhlv prppgpppga neeipddfdw
      541 dlit
//
LOCUS       XP_053937557             543 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein J2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053937557
VERSION     XP_053937557.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081582.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..543
                     /product="forkhead box protein J2 isoform X2"
                     /calculated_mol_wt=59845
     Region          65..146
                     /region_name="FH_FOXJ2"
                     /note="Forkhead (FH) domain found in Forkhead box protein
                     J2 (FOXJ2) and similar proteins; cd20051"
                     /db_xref="CDD:410825"
     Site            order(71,89..90,93,112..113,115..116,119,126,136..138,140)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410825"
     CDS             1..543
                     /gene="FOXJ2"
                     /coded_by="XM_054081582.1:979..2610"
                     /db_xref="GeneID:104060638"
ORIGIN      
        1 masdlesslt sidwlpqltl ratieklggs sqagppgtar kcppgsptdp natlskdeaa
       61 vhqdgkprys yatlityain sspakkmtls eiyrwicdnf pyyknagigw knsirhnlsl
      121 nkcfrkvprp rddpgkgsyw tidtcpdisr krrhppdddi pqdspeqeas ksprgavpvs
      181 teaslppeat pqlslqsttp ianysqgagp vdvastvagg qgregadvpp plysanhdfk
      241 fsyseinfqd lswsfrnlyk smlekssssq hgfssllgdm qpsnhnyymy qqqqqqgpss
      301 vsaapalhtp tpegcpsqgg kqqggegygp ppvmsmhppp mqhggyhqhq qhhphshpqq
      361 qphqhqqqqq sqasinnagf afppdwcsni dslkesfkmv nrlnwssieh sqfselmesl
      421 rqaerknwtl dqhhianlcd slnhfltqtg qlphlvgpqq pprisdscal nsgkqeqsmn
      481 qvnsygqpqp phlfsgpspm yqistqdspg ynrpahhlvp rppgpppgan eeipddfdwd
      541 lit
//
LOCUS       XP_053937568             372 aa            linear   VRT 09-MAR-2023
DEFINITION  C3a anaphylatoxin chemotactic receptor isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053937568
VERSION     XP_053937568.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081593.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..372
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..372
                     /product="C3a anaphylatoxin chemotactic receptor isoform
                     X1"
                     /calculated_mol_wt=41674
     Region          38..333
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          57..78
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          95..117
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          140..156
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          221..244
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          263..285
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          301..326
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..372
                     /gene="C3AR1"
                     /coded_by="XM_054081593.1:100..1218"
                     /db_xref="GeneID:104060639"
ORIGIN      
        1 msqllgntss heqaavyyap esivsiaifi iifivgipgn glviwvaglk mkrsvnivwf
       61 lnlavadfmc clslpfsivh lalheywlyg wflckvipsv iiftmftsvf llvaisidrc
      121 llvmkpvwcq nhrtvksisl vcsgiwilaf ifccpvfhyr etstydgkte cvynfgdekv
      181 ldyrddsvne lletysplay sgndswgnfy egdypvslal vainvtravf gfvlpfgima
      241 vcyaliafrm ranrfhkprn rmlqtivlvv aafficwapy hivgilslvp tlgtelmesl
      301 ilwdhlstal ayanscinpl vyvfvgqdfr akarqsvqgi legafteept rsipcsldrs
      361 ktstekdtss tv
//
LOCUS       XP_053937575             322 aa            linear   VRT 09-MAR-2023
DEFINITION  C3a anaphylatoxin chemotactic receptor isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053937575
VERSION     XP_053937575.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081600.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..322
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..322
                     /product="C3a anaphylatoxin chemotactic receptor isoform
                     X2"
                     /calculated_mol_wt=36390
     Region          1..283
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          7..28
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          45..67
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          90..106
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          171..194
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          213..235
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          251..276
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..322
                     /gene="C3AR1"
                     /coded_by="XM_054081600.1:115..1083"
                     /db_xref="GeneID:104060639"
ORIGIN      
        1 mkrsvnivwf lnlavadfmc clslpfsivh lalheywlyg wflckvipsv iiftmftsvf
       61 llvaisidrc llvmkpvwcq nhrtvksisl vcsgiwilaf ifccpvfhyr etstydgkte
      121 cvynfgdekv ldyrddsvne lletysplay sgndswgnfy egdypvslal vainvtravf
      181 gfvlpfgima vcyaliafrm ranrfhkprn rmlqtivlvv aafficwapy hivgilslvp
      241 tlgtelmesl ilwdhlstal ayanscinpl vyvfvgqdfr akarqsvqgi legafteept
      301 rsipcsldrs ktstekdtss tv
//
LOCUS       XP_053937588            1402 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked retinitis pigmentosa GTPase regulator isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053937588
VERSION     XP_053937588.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081613.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1402
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1402
                     /product="X-linked retinitis pigmentosa GTPase regulator
                     isoform X1"
                     /calculated_mol_wt=158069
     Region          48..370
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          <806..1078
                     /region_name="2A1904"
                     /note="K+-dependent Na+/Ca+ exchanger; TIGR00927"
                     /db_xref="CDD:273344"
     CDS             1..1402
                     /gene="RPGR"
                     /coded_by="XM_054081613.1:94..4302"
                     /db_xref="GeneID:104057427"
ORIGIN      
        1 mgrptamaqp aeedelpvpe sgaiftfgks kfaedvpskf wfkndkpvhi scgdehtaiv
       61 tgngklyvfg snnwgqlglg skntvskptc vkalkpektk lavcgrnhtl vytekgnvya
      121 aggnsegqlg lgdteerttf hlisfftsqh kikqlaagsy tsaavtedgq lfvwgdnseg
      181 qigladeacv svpcqvdvgk pvsyvscgyy hsalitgdge lytfgepdng klgllpeqlk
      241 nnrvpqpvlg imekvnkvac ggehtvvlte tdvytfglgq ygqlghgtfi fetsvpksvk
      301 hlrrhkicni tcgenhtavi aenglmftfg dgrhgklglg eesftnqfdp tlcynflsft
      361 vllvacggch mlvfaaprpk gseevlledl sendfnatis kisgeslltn tlqltsarmr
      421 rrerenspeq fvrmarslpp lgesflkssl pvtsntsplw fsttslpkae srkdrdhgkg
      481 knhqkdelse dsaedsdsen ndrnlgdttd ilnmthamkl npsdqslkls plqkqkknnk
      541 nvklkrdgkg gmknkdsdfm kegskldsss lqkqcslses srqdlekssa fvekpmakkn
      601 tmkgqlehaq svrtlkssvq qitrdkcrsv krekeykenp efvreevtcn ipiekqilte
      661 ktnssnkksk pvaskqslki evlpsasrdl pqtnsltvqk ynpvkkqvsl eaeskekike
      721 veksdkceri ctkeeennne qrkfkkkdqi lkqiavtmss ssteessnep akyilksrek
      781 eeddsedrai qkamktvetv kdldlekeds eieemqatnn ekecveetdi rslneeetns
      841 daksdeerql eirneeesnq eqesegseks esekektder vdsageqgde eeseiqkdrd
      901 gvsverdede eekdnkeene geeseaerds enedaekiee lnqedgkeqg deegrlmeee
      961 mlsegdesve egeyakeeyi eeenkeqvks egrgeseeeg edredkekev daeegehene
     1021 nkerenekdk edeeeeleqs lagrdeeeeg deqendenke renekdegge eeleqslagr
     1081 sedeiseeeq eenanrrtkk vevdrveeeg egegegegeg egeegkdeae ekredeeeee
     1141 egaaaeaege egeedenvee geneeeegee egedeeiegv geeeeqeege qrveeegega
     1201 eegegeegve aeeeeekeeg eeeeeeeeee eeeeeeeeee eeeeeeeeek eeeveeeeee
     1261 eeeeeeeeee eeeeeeeegg eeekgegege eegegegeke egeegpqgeg eeekmdvgee
     1321 dkedkreeee veeeekakgk rkddsnklpq tksktrkpek testalpnss kqkikskqhv
     1381 asrshnseqf wnnvlphylt lk
//
LOCUS       XP_053937597            1381 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked retinitis pigmentosa GTPase regulator isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053937597
VERSION     XP_053937597.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081622.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1381
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1381
                     /product="X-linked retinitis pigmentosa GTPase regulator
                     isoform X2"
                     /calculated_mol_wt=155744
     Region          48..349
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          <785..1057
                     /region_name="2A1904"
                     /note="K+-dependent Na+/Ca+ exchanger; TIGR00927"
                     /db_xref="CDD:273344"
     CDS             1..1381
                     /gene="RPGR"
                     /coded_by="XM_054081622.1:94..4239"
                     /db_xref="GeneID:104057427"
ORIGIN      
        1 mgrptamaqp aeedelpvpe sgaiftfgks kfaedvpskf wfkndkpvhi scgdehtaiv
       61 tgngklyvfg snnwgqlglg skntvskptc vkekgnvyaa ggnsegqlgl gdteerttfh
      121 lisfftsqhk ikqlaagsyt saavtedgql fvwgdnsegq igladeacvs vpcqvdvgkp
      181 vsyvscgyyh salitgdgel ytfgepdngk lgllpeqlkn nrvpqpvlgi mekvnkvacg
      241 gehtvvltet dvytfglgqy gqlghgtfif etsvpksvkh lrrhkicnit cgenhtavia
      301 englmftfgd grhgklglge esftnqfdpt lcynflsftv llvacggchm lvfaaprpkg
      361 seevlledls endfnatisk isgeslltnt lqltsarmrr rerenspeqf vrmarslppl
      421 gesflksslp vtsntsplwf sttslpkaes rkdrdhgkgk nhqkdelsed saedsdsenn
      481 drnlgdttdi lnmthamkln psdqslklsp lqkqkknnkn vklkrdgkgg mknkdsdfmk
      541 egskldsssl qkqcslsess rqdlekssaf vekpmakknt mkgqlehaqs vrtlkssvqq
      601 itrdkcrsvk rekeykenpe fvreevtcni piekqiltek tnssnkkskp vaskqslkie
      661 vlpsasrdlp qtnsltvqky npvkkqvsle aeskekikev eksdkceric tkeeennneq
      721 rkfkkkdqil kqiavtmsss steessnepa kyilksreke eddsedraiq kamktvetvk
      781 dldlekedse ieemqatnne kecveetdir slneeetnsd aksdeerqle irneeesnqe
      841 qesegsekse sekektderv dsageqgdee eseiqkdrdg vsverdedee ekdnkeeneg
      901 eeseaerdse nedaekieel nqedgkeqgd eegrlmeeem lsegdesvee geyakeeyie
      961 eenkeqvkse grgeseeege dredkekevd aeegehenen kerenekdke deeeeleqsl
     1021 agrdeeeegd eqendenker enekdeggee eleqslagrs edeiseeeqe enanrrtkkv
     1081 evdrveeege gegegegege geegkdeaee kredeeeeee gaaaeaegee geedenveeg
     1141 eneeeegeee gedeeiegvg eeeeqeegeq rveeegegae egegeegvea eeeeekeege
     1201 eeeeeeeeee eeeeeeeeee eeeeeeeeke eeveeeeeee eeeeeeeeee eeeeeeegge
     1261 eekgegegee egegegekee geegpqgege eekmdvgeed kedkreeeev eeeekakgkr
     1321 kddsnklpqt ksktrkpekt estalpnssk qkikskqhva srshnseqfw nnvlphyltl
     1381 k
//
LOCUS       XP_053937608            1328 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked retinitis pigmentosa GTPase regulator isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053937608
VERSION     XP_053937608.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081633.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1328
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1328
                     /product="X-linked retinitis pigmentosa GTPase regulator
                     isoform X3"
                     /calculated_mol_wt=150172
     Region          48..>277
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          <732..1004
                     /region_name="2A1904"
                     /note="K+-dependent Na+/Ca+ exchanger; TIGR00927"
                     /db_xref="CDD:273344"
     CDS             1..1328
                     /gene="RPGR"
                     /coded_by="XM_054081633.1:94..4080"
                     /db_xref="GeneID:104057427"
ORIGIN      
        1 mgrptamaqp aeedelpvpe sgaiftfgks kfaedvpskf wfkndkpvhi scgdehtaiv
       61 tgngklyvfg snnwgqlglg skntvskptc vkedgqlfvw gdnsegqigl adeacvsvpc
      121 qvdvgkpvsy vscgyyhsal itgdgelytf gepdngklgl lpeqlknnrv pqpvlgimek
      181 vnkvacggeh tvvltetdvy tfglgqygql ghgtfifets vpksvkhlrr hkicnitcge
      241 nhtaviaeng lmftfgdgrh gklglgeesf tnqfdptlcy nflsftvllv acggchmlvf
      301 aaprpkgsee vlledlsend fnatiskisg eslltntlql tsarmrrrer enspeqfvrm
      361 arslpplges flksslpvts ntsplwfstt slpkaesrkd rdhgkgknhq kdelsedsae
      421 dsdsenndrn lgdttdilnm thamklnpsd qslklsplqk qkknnknvkl krdgkggmkn
      481 kdsdfmkegs kldssslqkq cslsessrqd lekssafvek pmakkntmkg qlehaqsvrt
      541 lkssvqqitr dkcrsvkrek eykenpefvr eevtcnipie kqiltektns snkkskpvas
      601 kqslkievlp sasrdlpqtn sltvqkynpv kkqvsleaes kekikeveks dkcerictke
      661 eennneqrkf kkkdqilkqi avtmsssste essnepakyi lksrekeedd sedraiqkam
      721 ktvetvkdld lekedseiee mqatnnekec veetdirsln eeetnsdaks deerqleirn
      781 eeesnqeqes egseksesek ektdervdsa geqgdeeese iqkdrdgvsv erdedeeekd
      841 nkeenegees eaerdsened aekieelnqe dgkeqgdeeg rlmeeemlse gdesveegey
      901 akeeyieeen keqvksegrg eseeegedre dkekevdaee gehenenker enekdkedee
      961 eeleqslagr deeeegdeqe ndenkerene kdeggeeele qslagrsede iseeeqeena
     1021 nrrtkkvevd rveeegegeg egegegegee gkdeaeekre deeeeeegaa aeaegeegee
     1081 denveegene eeegeeeged eeiegvgeee eqeegeqrve eegegaeege geegveaeee
     1141 eekeegeeee eeeeeeeeee eeeeeeeeee eeeeekeeev eeeeeeeeee eeeeeeeeee
     1201 eeeeggeeek gegegeeege gegekeegee gpqgegeeek mdvgeedked kreeeeveee
     1261 ekakgkrkdd snklpqtksk trkpektest alpnsskqki kskqhvasrs hnseqfwnnv
     1321 lphyltlk
//
LOCUS       XP_053937617             537 aa            linear   VRT 09-MAR-2023
DEFINITION  tyrosinase [Cuculus canorus].
ACCESSION   XP_053937617
VERSION     XP_053937617.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081642.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..537
                     /product="tyrosinase"
                     /calculated_mol_wt=60997
     Region          178..411
                     /region_name="Tyrosinase"
                     /note="Common central domain of tyrosinase; pfam00264"
                     /db_xref="CDD:425566"
     CDS             1..537
                     /gene="TYR"
                     /coded_by="XM_054081642.1:123..1736"
                     /db_xref="GeneID:104064099"
ORIGIN      
        1 mvsccsvrms ffamgfllvi lqpstgqfpr acantqsllr keccppwdgd gspcgelssr
       61 gscqnillsl aplgpqfpfs gvddredwps vfynrtckcq gnfmgfncge ckfgfsgqnc
      121 teirlrtrrn ifhltthdkd kflaylnlak ntpskdyvia tgtyaqmnng snpmfrnvnv
      181 ydlfvwmhyy asrdtllggf nvwrdidfah eapgflpwhr vflllwerei qkitgdenft
      241 ipywdwrdae ncvictdeym ggrhptnpnl lspasffssw qvictrseey nsqqalcnat
      301 gegpilrnpg nndksrtprl pssaevefcl sltqyesgpm dkmanysfrn tlegfadprt
      361 aisnisqsgl hnalhiymng smsqvqgsan dpifvlhhaf vdsifeqwlr rhrpmlevyp
      421 aanapighnr enymvpfipl yrngeffkps relgydyeyl qepvlgsfqe flipyldqar
      481 qiwawlvgaa viggvitavl tglilacrkk rrgtsseiqp lliesedynn mcyqsnf
//
LOCUS       XP_009556188             444 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM and senescent cell antigen-like-containing domain protein 1
            isoform X1 [Cuculus canorus].
ACCESSION   XP_009556188
VERSION     XP_009556188.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557893.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556188.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..444
                     /product="LIM and senescent cell antigen-like-containing
                     domain protein 1 isoform X1"
                     /calculated_mol_wt=51243
     Region          118..176
                     /region_name="LIM1_PINCH"
                     /note="The first LIM domain of protein PINCH; cd09331"
                     /db_xref="CDD:188717"
     Site            order(118,121,140,143,146,149,167,170)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188717"
     Site            order(120..121,123,145,147..151,161..162,164,169..170,
                     172..176)
                     /site_type="other"
                     /note="ILK binding interface"
                     /db_xref="CDD:188717"
     Region          179..230
                     /region_name="LIM2_PINCH"
                     /note="The second LIM domain of protein PINCH; cd09332"
                     /db_xref="CDD:188718"
     Site            order(179,182,199,202,205,208,226,229)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188718"
     Region          243..293
                     /region_name="LIM3_PINCH"
                     /note="The third LIM domain of protein PINCH; cd09333"
                     /db_xref="CDD:188719"
     Site            order(243,246,263,266,269,272,289,292)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188719"
     Region          299..352
                     /region_name="LIM4_PINCH"
                     /note="The fourth LIM domain of protein PINCH; cd09334"
                     /db_xref="CDD:188720"
     Site            order(300,304..307)
                     /site_type="other"
                     /note="N(i)ck binding interface"
                     /db_xref="CDD:188720"
     Site            order(301,304,321,324,327,330,348,351)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188720"
     Region          360..413
                     /region_name="LIM5_PINCH"
                     /note="The fifth LIM domain of protein PINCH; cd09335"
                     /db_xref="CDD:188721"
     Site            order(360,363,380,383,386,389,408,411)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188721"
     CDS             1..444
                     /gene="LIMS1"
                     /coded_by="XM_009557893.2:126..1460"
                     /db_xref="GeneID:104056628"
ORIGIN      
        1 mtrscesksl hweqgevqht vsqtlpiasl qykrriytpg kairremdfq rrahpytipe
       61 deevahkvas dahnsagned ekpvsklqrr hsdvklykef cdfyakfnma nalanaicer
      121 crggfapaek ivnsngelyh eqcfvcaqcf qqfpeglfye fegrkycehd fqmlfapcch
      181 qcgefiigrv ikamnnswhp ecfccdicqq vladigfvkn agrhlcrpch nrekarglgk
      241 yicqkchaii deqplifknd pyhpdhfnct ncgkeltada relkgelycl pchdkmgvpi
      301 cgacrrpieg rvvnamgkqw hvehfvcakc ekpflghrhy erkglaycet hynqlfgdvc
      361 fhcnrviegd vvsalnkawc vncfacstcn tkltlkdkfv eidlkpvckh cyekmpdefk
      421 rrlakrerea kdkekqkkkk picl
//
LOCUS       XP_053937640             444 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM and senescent cell antigen-like-containing domain protein 1
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053937640
VERSION     XP_053937640.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081665.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..444
                     /product="LIM and senescent cell antigen-like-containing
                     domain protein 1 isoform X1"
                     /calculated_mol_wt=51243
     Region          118..176
                     /region_name="LIM1_PINCH"
                     /note="The first LIM domain of protein PINCH; cd09331"
                     /db_xref="CDD:188717"
     Site            order(118,121,140,143,146,149,167,170)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188717"
     Site            order(120..121,123,145,147..151,161..162,164,169..170,
                     172..176)
                     /site_type="other"
                     /note="ILK binding interface"
                     /db_xref="CDD:188717"
     Region          179..230
                     /region_name="LIM2_PINCH"
                     /note="The second LIM domain of protein PINCH; cd09332"
                     /db_xref="CDD:188718"
     Site            order(179,182,199,202,205,208,226,229)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188718"
     Region          243..293
                     /region_name="LIM3_PINCH"
                     /note="The third LIM domain of protein PINCH; cd09333"
                     /db_xref="CDD:188719"
     Site            order(243,246,263,266,269,272,289,292)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188719"
     Region          299..352
                     /region_name="LIM4_PINCH"
                     /note="The fourth LIM domain of protein PINCH; cd09334"
                     /db_xref="CDD:188720"
     Site            order(300,304..307)
                     /site_type="other"
                     /note="N(i)ck binding interface"
                     /db_xref="CDD:188720"
     Site            order(301,304,321,324,327,330,348,351)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188720"
     Region          360..413
                     /region_name="LIM5_PINCH"
                     /note="The fifth LIM domain of protein PINCH; cd09335"
                     /db_xref="CDD:188721"
     Site            order(360,363,380,383,386,389,408,411)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188721"
     CDS             1..444
                     /gene="LIMS1"
                     /coded_by="XM_054081665.1:127..1461"
                     /db_xref="GeneID:104056628"
ORIGIN      
        1 mtrscesksl hweqgevqht vsqtlpiasl qykrriytpg kairremdfq rrahpytipe
       61 deevahkvas dahnsagned ekpvsklqrr hsdvklykef cdfyakfnma nalanaicer
      121 crggfapaek ivnsngelyh eqcfvcaqcf qqfpeglfye fegrkycehd fqmlfapcch
      181 qcgefiigrv ikamnnswhp ecfccdicqq vladigfvkn agrhlcrpch nrekarglgk
      241 yicqkchaii deqplifknd pyhpdhfnct ncgkeltada relkgelycl pchdkmgvpi
      301 cgacrrpieg rvvnamgkqw hvehfvcakc ekpflghrhy erkglaycet hynqlfgdvc
      361 fhcnrviegd vvsalnkawc vncfacstcn tkltlkdkfv eidlkpvckh cyekmpdefk
      421 rrlakrerea kdkekqkkkk picl
//
LOCUS       XP_009556190             433 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM and senescent cell antigen-like-containing domain protein 1
            isoform X2 [Cuculus canorus].
ACCESSION   XP_009556190
VERSION     XP_009556190.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557895.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556190.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..433
                     /product="LIM and senescent cell antigen-like-containing
                     domain protein 1 isoform X2"
                     /calculated_mol_wt=49826
     Region          118..176
                     /region_name="LIM1_PINCH"
                     /note="The first LIM domain of protein PINCH; cd09331"
                     /db_xref="CDD:188717"
     Site            order(118,121,140,143,146,149,167,170)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188717"
     Site            order(120..121,123,145,147..151,161..162,164,169..170,
                     172..176)
                     /site_type="other"
                     /note="ILK binding interface"
                     /db_xref="CDD:188717"
     Region          179..230
                     /region_name="LIM2_PINCH"
                     /note="The second LIM domain of protein PINCH; cd09332"
                     /db_xref="CDD:188718"
     Site            order(179,182,199,202,205,208,226,229)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188718"
     Region          243..293
                     /region_name="LIM3_PINCH"
                     /note="The third LIM domain of protein PINCH; cd09333"
                     /db_xref="CDD:188719"
     Site            order(243,246,263,266,269,272,289,292)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188719"
     Region          299..352
                     /region_name="LIM4_PINCH"
                     /note="The fourth LIM domain of protein PINCH; cd09334"
                     /db_xref="CDD:188720"
     Site            order(300,304..307)
                     /site_type="other"
                     /note="N(i)ck binding interface"
                     /db_xref="CDD:188720"
     Site            order(301,304,321,324,327,330,348,351)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188720"
     Region          360..413
                     /region_name="LIM5_PINCH"
                     /note="The fifth LIM domain of protein PINCH; cd09335"
                     /db_xref="CDD:188721"
     Site            order(360,363,380,383,386,389,408,411)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188721"
     CDS             1..433
                     /gene="LIMS1"
                     /coded_by="XM_009557895.2:122..1423"
                     /db_xref="GeneID:104056628"
ORIGIN      
        1 mtrscesksl hweqgevqht vsqtlpiasl qykrriytpg kairremdfq rrahpytipe
       61 deevahkvas dahnsagned ekpvsklqrr hsdvklykef cdfyakfnma nalanaicer
      121 crggfapaek ivnsngelyh eqcfvcaqcf qqfpeglfye fegrkycehd fqmlfapcch
      181 qcgefiigrv ikamnnswhp ecfccdicqq vladigfvkn agrhlcrpch nrekarglgk
      241 yicqkchaii deqplifknd pyhpdhfnct ncgkeltada relkgelycl pchdkmgvpi
      301 cgacrrpieg rvvnamgkqw hvehfvcakc ekpflghrhy erkglaycet hynqlfgdvc
      361 fhcnrviegd vvsalnkawc vncfacstcn tkltlknkfv efdmkpvckk cyekfplelk
      421 krlkklaetl grk
//
LOCUS       XP_053937656             373 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM and senescent cell antigen-like-containing domain protein 1
            isoform X3 [Cuculus canorus].
ACCESSION   XP_053937656
VERSION     XP_053937656.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081681.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..373
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..373
                     /product="LIM and senescent cell antigen-like-containing
                     domain protein 1 isoform X3"
                     /calculated_mol_wt=42789
     Region          47..105
                     /region_name="LIM1_PINCH"
                     /note="The first LIM domain of protein PINCH; cd09331"
                     /db_xref="CDD:188717"
     Site            order(47,50,69,72,75,78,96,99)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188717"
     Site            order(49..50,52,74,76..80,90..91,93,98..99,101..105)
                     /site_type="other"
                     /note="ILK binding interface"
                     /db_xref="CDD:188717"
     Region          108..159
                     /region_name="LIM2_PINCH"
                     /note="The second LIM domain of protein PINCH; cd09332"
                     /db_xref="CDD:188718"
     Site            order(108,111,128,131,134,137,155,158)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188718"
     Region          172..222
                     /region_name="LIM3_PINCH"
                     /note="The third LIM domain of protein PINCH; cd09333"
                     /db_xref="CDD:188719"
     Site            order(172,175,192,195,198,201,218,221)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188719"
     Region          228..281
                     /region_name="LIM4_PINCH"
                     /note="The fourth LIM domain of protein PINCH; cd09334"
                     /db_xref="CDD:188720"
     Site            order(229,233..236)
                     /site_type="other"
                     /note="N(i)ck binding interface"
                     /db_xref="CDD:188720"
     Site            order(230,233,250,253,256,259,277,280)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188720"
     Region          289..342
                     /region_name="LIM5_PINCH"
                     /note="The fifth LIM domain of protein PINCH; cd09335"
                     /db_xref="CDD:188721"
     Site            order(289,292,309,312,315,318,337,340)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188721"
     CDS             1..373
                     /gene="LIMS1"
                     /coded_by="XM_054081681.1:194..1315"
                     /db_xref="GeneID:104056628"
ORIGIN      
        1 mtalqlkels qsglyrrrrd rpdsvglpgs heeklsnman alanaicerc rggfapaeki
       61 vnsngelyhe qcfvcaqcfq qfpeglfyef egrkycehdf qmlfapcchq cgefiigrvi
      121 kamnnswhpe cfccdicqqv ladigfvkna grhlcrpchn rekarglgky icqkchaiid
      181 eqplifkndp yhpdhfnctn cgkeltadar elkgelyclp chdkmgvpic gacrrpiegr
      241 vvnamgkqwh vehfvcakce kpflghrhye rkglayceth ynqlfgdvcf hcnrviegdv
      301 vsalnkawcv ncfacstcnt kltlkdkfve idlkpvckhc yekmpdefkr rlakrereak
      361 dkekqkkkkp icl
//
LOCUS       XP_009556191             362 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM and senescent cell antigen-like-containing domain protein 1
            isoform X4 [Cuculus canorus].
ACCESSION   XP_009556191
VERSION     XP_009556191.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557896.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..362
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..362
                     /product="LIM and senescent cell antigen-like-containing
                     domain protein 1 isoform X4"
                     /calculated_mol_wt=41371
     Region          47..105
                     /region_name="LIM1_PINCH"
                     /note="The first LIM domain of protein PINCH; cd09331"
                     /db_xref="CDD:188717"
     Site            order(47,50,69,72,75,78,96,99)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188717"
     Site            order(49..50,52,74,76..80,90..91,93,98..99,101..105)
                     /site_type="other"
                     /note="ILK binding interface"
                     /db_xref="CDD:188717"
     Region          108..159
                     /region_name="LIM2_PINCH"
                     /note="The second LIM domain of protein PINCH; cd09332"
                     /db_xref="CDD:188718"
     Site            order(108,111,128,131,134,137,155,158)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188718"
     Region          172..222
                     /region_name="LIM3_PINCH"
                     /note="The third LIM domain of protein PINCH; cd09333"
                     /db_xref="CDD:188719"
     Site            order(172,175,192,195,198,201,218,221)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188719"
     Region          228..281
                     /region_name="LIM4_PINCH"
                     /note="The fourth LIM domain of protein PINCH; cd09334"
                     /db_xref="CDD:188720"
     Site            order(229,233..236)
                     /site_type="other"
                     /note="N(i)ck binding interface"
                     /db_xref="CDD:188720"
     Site            order(230,233,250,253,256,259,277,280)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188720"
     Region          289..342
                     /region_name="LIM5_PINCH"
                     /note="The fifth LIM domain of protein PINCH; cd09335"
                     /db_xref="CDD:188721"
     Site            order(289,292,309,312,315,318,337,340)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188721"
     CDS             1..362
                     /gene="LIMS1"
                     /coded_by="XM_009557896.2:182..1270"
                     /db_xref="GeneID:104056628"
ORIGIN      
        1 mtalqlkels qsglyrrrrd rpdsvglpgs heeklsnman alanaicerc rggfapaeki
       61 vnsngelyhe qcfvcaqcfq qfpeglfyef egrkycehdf qmlfapcchq cgefiigrvi
      121 kamnnswhpe cfccdicqqv ladigfvkna grhlcrpchn rekarglgky icqkchaiid
      181 eqplifkndp yhpdhfnctn cgkeltadar elkgelyclp chdkmgvpic gacrrpiegr
      241 vvnamgkqwh vehfvcakce kpflghrhye rkglayceth ynqlfgdvcf hcnrviegdv
      301 vsalnkawcv ncfacstcnt kltlknkfve fdmkpvckkc yekfplelkk rlkklaetlg
      361 rk
//
LOCUS       XP_053937672             350 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM and senescent cell antigen-like-containing domain protein 1
            isoform X5 [Cuculus canorus].
ACCESSION   XP_053937672
VERSION     XP_053937672.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081697.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..350
                     /product="LIM and senescent cell antigen-like-containing
                     domain protein 1 isoform X5"
                     /calculated_mol_wt=39903
     Region          24..82
                     /region_name="LIM1_PINCH"
                     /note="The first LIM domain of protein PINCH; cd09331"
                     /db_xref="CDD:188717"
     Site            order(24,27,46,49,52,55,73,76)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188717"
     Site            order(26..27,29,51,53..57,67..68,70,75..76,78..82)
                     /site_type="other"
                     /note="ILK binding interface"
                     /db_xref="CDD:188717"
     Region          85..136
                     /region_name="LIM2_PINCH"
                     /note="The second LIM domain of protein PINCH; cd09332"
                     /db_xref="CDD:188718"
     Site            order(85,88,105,108,111,114,132,135)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188718"
     Region          149..199
                     /region_name="LIM3_PINCH"
                     /note="The third LIM domain of protein PINCH; cd09333"
                     /db_xref="CDD:188719"
     Site            order(149,152,169,172,175,178,195,198)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188719"
     Region          205..258
                     /region_name="LIM4_PINCH"
                     /note="The fourth LIM domain of protein PINCH; cd09334"
                     /db_xref="CDD:188720"
     Site            order(206,210..213)
                     /site_type="other"
                     /note="N(i)ck binding interface"
                     /db_xref="CDD:188720"
     Site            order(207,210,227,230,233,236,254,257)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188720"
     Region          266..319
                     /region_name="LIM5_PINCH"
                     /note="The fifth LIM domain of protein PINCH; cd09335"
                     /db_xref="CDD:188721"
     Site            order(266,269,286,289,292,295,314,317)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188721"
     CDS             1..350
                     /gene="LIMS1"
                     /coded_by="XM_054081697.1:93..1145"
                     /db_xref="GeneID:104056628"
ORIGIN      
        1 mlgvaaagmt cnsnmanala naicercrgg fapaekivns ngelyheqcf vcaqcfqqfp
       61 eglfyefegr kycehdfqml fapcchqcge fiigrvikam nnswhpecfc cdicqqvlad
      121 igfvknagrh lcrpchnrek arglgkyicq kchaiideqp lifkndpyhp dhfnctncgk
      181 eltadarelk gelyclpchd kmgvpicgac rrpiegrvvn amgkqwhveh fvcakcekpf
      241 lghrhyerkg laycethynq lfgdvcfhcn rviegdvvsa lnkawcvncf acstcntklt
      301 lkdkfveidl kpvckhcyek mpdefkrrla krereakdke kqkkkkpicl
//
LOCUS       XP_053937677             341 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM and senescent cell antigen-like-containing domain protein 1
            isoform X6 [Cuculus canorus].
ACCESSION   XP_053937677
VERSION     XP_053937677.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081702.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..341
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..341
                     /product="LIM and senescent cell antigen-like-containing
                     domain protein 1 isoform X6"
                     /calculated_mol_wt=39144
     Region          15..73
                     /region_name="LIM1_PINCH"
                     /note="The first LIM domain of protein PINCH; cd09331"
                     /db_xref="CDD:188717"
     Site            order(15,18,37,40,43,46,64,67)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188717"
     Site            order(17..18,20,42,44..48,58..59,61,66..67,69..73)
                     /site_type="other"
                     /note="ILK binding interface"
                     /db_xref="CDD:188717"
     Region          76..127
                     /region_name="LIM2_PINCH"
                     /note="The second LIM domain of protein PINCH; cd09332"
                     /db_xref="CDD:188718"
     Site            order(76,79,96,99,102,105,123,126)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188718"
     Region          140..190
                     /region_name="LIM3_PINCH"
                     /note="The third LIM domain of protein PINCH; cd09333"
                     /db_xref="CDD:188719"
     Site            order(140,143,160,163,166,169,186,189)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188719"
     Region          196..249
                     /region_name="LIM4_PINCH"
                     /note="The fourth LIM domain of protein PINCH; cd09334"
                     /db_xref="CDD:188720"
     Site            order(197,201..204)
                     /site_type="other"
                     /note="N(i)ck binding interface"
                     /db_xref="CDD:188720"
     Site            order(198,201,218,221,224,227,245,248)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188720"
     Region          257..310
                     /region_name="LIM5_PINCH"
                     /note="The fifth LIM domain of protein PINCH; cd09335"
                     /db_xref="CDD:188721"
     Site            order(257,260,277,280,283,286,305,308)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188721"
     CDS             1..341
                     /gene="LIMS1"
                     /coded_by="XM_054081702.1:261..1286"
                     /db_xref="GeneID:104056628"
ORIGIN      
        1 metsnmanal anaicercrg gfapaekivn sngelyheqc fvcaqcfqqf peglfyefeg
       61 rkycehdfqm lfapcchqcg efiigrvika mnnswhpecf ccdicqqvla digfvknagr
      121 hlcrpchnre karglgkyic qkchaiideq plifkndpyh pdhfnctncg keltadarel
      181 kgelyclpch dkmgvpicga crrpiegrvv namgkqwhve hfvcakcekp flghrhyerk
      241 glaycethyn qlfgdvcfhc nrviegdvvs alnkawcvnc facstcntkl tlkdkfveid
      301 lkpvckhcye kmpdefkrrl akrereakdk ekqkkkkpic l
//
LOCUS       XP_053937683             336 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM and senescent cell antigen-like-containing domain protein 1
            isoform X7 [Cuculus canorus].
ACCESSION   XP_053937683
VERSION     XP_053937683.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081708.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..336
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..336
                     /product="LIM and senescent cell antigen-like-containing
                     domain protein 1 isoform X7"
                     /calculated_mol_wt=38581
     Region          10..68
                     /region_name="LIM1_PINCH"
                     /note="The first LIM domain of protein PINCH; cd09331"
                     /db_xref="CDD:188717"
     Site            order(10,13,32,35,38,41,59,62)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188717"
     Site            order(12..13,15,37,39..43,53..54,56,61..62,64..68)
                     /site_type="other"
                     /note="ILK binding interface"
                     /db_xref="CDD:188717"
     Region          71..122
                     /region_name="LIM2_PINCH"
                     /note="The second LIM domain of protein PINCH; cd09332"
                     /db_xref="CDD:188718"
     Site            order(71,74,91,94,97,100,118,121)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188718"
     Region          135..185
                     /region_name="LIM3_PINCH"
                     /note="The third LIM domain of protein PINCH; cd09333"
                     /db_xref="CDD:188719"
     Site            order(135,138,155,158,161,164,181,184)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188719"
     Region          191..244
                     /region_name="LIM4_PINCH"
                     /note="The fourth LIM domain of protein PINCH; cd09334"
                     /db_xref="CDD:188720"
     Site            order(192,196..199)
                     /site_type="other"
                     /note="N(i)ck binding interface"
                     /db_xref="CDD:188720"
     Site            order(193,196,213,216,219,222,240,243)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188720"
     Region          252..305
                     /region_name="LIM5_PINCH"
                     /note="The fifth LIM domain of protein PINCH; cd09335"
                     /db_xref="CDD:188721"
     Site            order(252,255,272,275,278,281,300,303)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188721"
     CDS             1..336
                     /gene="LIMS1"
                     /coded_by="XM_054081708.1:112..1122"
                     /db_xref="GeneID:104056628"
ORIGIN      
        1 manalanaic ercrggfapa ekivnsngel yheqcfvcaq cfqqfpeglf yefegrkyce
       61 hdfqmlfapc chqcgefiig rvikamnnsw hpecfccdic qqvladigfv knagrhlcrp
      121 chnrekargl gkyicqkcha iideqplifk ndpyhpdhfn ctncgkelta darelkgely
      181 clpchdkmgv picgacrrpi egrvvnamgk qwhvehfvca kcekpflghr hyerkglayc
      241 ethynqlfgd vcfhcnrvie gdvvsalnka wcvncfacst cntkltlkdk fveidlkpvc
      301 khcyekmpde fkrrlakrer eakdkekqkk kkpicl
//
LOCUS       XP_053937696            1051 aa            linear   VRT 09-MAR-2023
DEFINITION  ephrin type-A receptor 6 isoform X1 [Cuculus canorus].
ACCESSION   XP_053937696
VERSION     XP_053937696.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081721.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1051
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1051
                     /product="ephrin type-A receptor 6 isoform X1"
                     /calculated_mol_wt=117903
     Region          35..206
                     /region_name="EphR_LBD_A6"
                     /note="Ligand Binding Domain of Ephrin type-A Receptor 6;
                     cd10484"
                     /db_xref="CDD:198452"
     Site            order(58,60..64,71..72,74,76,107,109,114..115,157,
                     161..162,165..167,194..196,198)
                     /site_type="other"
                     /note="ephrin binding site [polypeptide binding]"
                     /db_xref="CDD:198452"
     Region          274..312
                     /region_name="Ephrin_rec_like"
                     /note="Tyrosine-protein kinase ephrin type A/B
                     receptor-like; pfam07699"
                     /db_xref="CDD:429604"
     Site            order(332,407,420)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          333..427
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(421..422,424..425)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          443..550
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(443,523,538)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(539..540,542..543)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          567..644
                     /region_name="EphA2_TM"
                     /note="Ephrin type-A receptor 2 transmembrane domain;
                     pfam14575"
                     /db_xref="CDD:464211"
     Region          642..949
                     /region_name="PTKc_EphR_A"
                     /note="Catalytic domain of the Protein Tyrosine Kinases,
                     Class EphA Ephrin Receptors; cd05066"
                     /db_xref="CDD:270651"
     Site            order(653,655..657,661,677,679,766..767,769,813,817..818,
                     820,831,850..854,863,897)
                     /site_type="active"
                     /db_xref="CDD:270651"
     Site            order(653..657,661,677,679,766..769,772..773,817..818,820,
                     831)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270651"
     Site            order(813,817,850..854,863,897)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270651"
     Site            830..856
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270651"
     Region          976..1039
                     /region_name="SAM_EPH-A6"
                     /note="SAM domain of EPH-A6 subfamily of tyrosine kinase
                     receptors; cd09547"
                     /db_xref="CDD:188946"
     Site            order(993,1026)
                     /site_type="other"
                     /note="putative phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:188946"
     CDS             1..1051
                     /gene="EPHA6"
                     /coded_by="XM_054081721.1:126..3281"
                     /db_xref="GeneID:104056015"
ORIGIN      
        1 mgccevrgwl wrvglflpll tarpaaaghv asnhvvlldt taalgelawk tfplngwdsi
       61 temdehnrpi htyqvcnvme pnqnnwlrtn wisrdaaqki yvemkftlrd cnsipwvlgt
      121 cketfnlyym esdeshgvkf kpnqytkidt iaadesftqm dlgdrilkln tevrevgpin
      181 kkgfylafqd igacialvsv rvyykkcpft vrnlavfpdt iprvdssslv evrgscvksa
      241 eerdtpklyc gadgdwlvpl grcicsvgye evdgschacr pgfykafagn vkcskcpphs
      301 sthieatsvc qcekgyfrae kdpptmactr ppsaprnvif ninetalmle wsppsdtggr
      361 kdltysvick kcgsdasqce icgggirfip rhtglinssv tvldfvshvn ytfeieatng
      421 vselsfspkq ftaitvttdq dapsligmvr kdwasqnsia lswqepdfph gaildyeiky
      481 yekvypriap afwhylrvee heqlsysstr skapsviitg lkpatkyifh irvrtaagys
      541 gysqkfefet gdetsdmaae qgqilviata avggftllvi ltlfflitgr cqwyikakmk
      601 seekrrahlq nghlrfpgak tyidpdtyed pslavhefak eidpsririe rvigagefge
      661 vcsgrlktpg kreipvaikt lkggyldrqr rdflreasim gqfdhpniir legvvtkrsf
      721 ptigvkslsr flragflnsi ltshpvsggg slppsissgr pvmivveyme ngsldsflrk
      781 hdghftviql vgmlrgiasg mkylsdmgyv hrdlaarnil vnsnlmckvs dfglsrvled
      841 dpeaayttsg gkipirwtap eaiayrkfss asdawsygiv mwevmsyger pywemsnqdv
      901 ilsieegyrl papmgcptsl hqlmlhcwqk ernhrpkfsd ivnfldklir npsslhtlve
      961 delvmtdspg evpeyplfvs vsdwldsikm gqyknnfmaa gfttldmvsr msiddirrig
     1021 vvlighqrri vsslqtlrlh mmhiqekgfh v
//
LOCUS       XP_053937705            1035 aa            linear   VRT 09-MAR-2023
DEFINITION  ephrin type-A receptor 6 isoform X2 [Cuculus canorus].
ACCESSION   XP_053937705
VERSION     XP_053937705.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081730.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1035
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1035
                     /product="ephrin type-A receptor 6 isoform X2"
                     /calculated_mol_wt=115903
     Region          35..206
                     /region_name="EphR_LBD_A6"
                     /note="Ligand Binding Domain of Ephrin type-A Receptor 6;
                     cd10484"
                     /db_xref="CDD:198452"
     Site            order(58,60..64,71..72,74,76,107,109,114..115,157,
                     161..162,165..167,194..196,198)
                     /site_type="other"
                     /note="ephrin binding site [polypeptide binding]"
                     /db_xref="CDD:198452"
     Region          274..312
                     /region_name="Ephrin_rec_like"
                     /note="Tyrosine-protein kinase ephrin type A/B
                     receptor-like; pfam07699"
                     /db_xref="CDD:429604"
     Site            order(332,407,420)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          333..427
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(421..422,424..425)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          443..534
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(443,507,522)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(523..524,526..527)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          551..628
                     /region_name="EphA2_TM"
                     /note="Ephrin type-A receptor 2 transmembrane domain;
                     pfam14575"
                     /db_xref="CDD:464211"
     Region          626..933
                     /region_name="PTKc_EphR_A"
                     /note="Catalytic domain of the Protein Tyrosine Kinases,
                     Class EphA Ephrin Receptors; cd05066"
                     /db_xref="CDD:270651"
     Site            order(637,639..641,645,661,663,750..751,753,797,801..802,
                     804,815,834..838,847,881)
                     /site_type="active"
                     /db_xref="CDD:270651"
     Site            order(637..641,645,661,663,750..753,756..757,801..802,804,
                     815)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270651"
     Site            order(797,801,834..838,847,881)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270651"
     Site            814..840
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270651"
     Region          960..1023
                     /region_name="SAM_EPH-A6"
                     /note="SAM domain of EPH-A6 subfamily of tyrosine kinase
                     receptors; cd09547"
                     /db_xref="CDD:188946"
     Site            order(977,1010)
                     /site_type="other"
                     /note="putative phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:188946"
     CDS             1..1035
                     /gene="EPHA6"
                     /coded_by="XM_054081730.1:126..3233"
                     /db_xref="GeneID:104056015"
ORIGIN      
        1 mgccevrgwl wrvglflpll tarpaaaghv asnhvvlldt taalgelawk tfplngwdsi
       61 temdehnrpi htyqvcnvme pnqnnwlrtn wisrdaaqki yvemkftlrd cnsipwvlgt
      121 cketfnlyym esdeshgvkf kpnqytkidt iaadesftqm dlgdrilkln tevrevgpin
      181 kkgfylafqd igacialvsv rvyykkcpft vrnlavfpdt iprvdssslv evrgscvksa
      241 eerdtpklyc gadgdwlvpl grcicsvgye evdgschacr pgfykafagn vkcskcpphs
      301 sthieatsvc qcekgyfrae kdpptmactr ppsaprnvif ninetalmle wsppsdtggr
      361 kdltysvick kcgsdasqce icgggirfip rhtglinssv tvldfvshvn ytfeieatng
      421 vselsfspkq ftaitvttdq dapsligmvr kdwasqnsia lswqepdfph gaildyeiky
      481 yekeheqlsy sstrskapsv iitglkpatk yifhirvrta agysgysqkf efetgdetsd
      541 maaeqgqilv iataavggft llviltlffl itgrcqwyik akmkseekrr ahlqnghlrf
      601 pgaktyidpd tyedpslavh efakeidpsr iriervigag efgevcsgrl ktpgkreipv
      661 aiktlkggyl drqrrdflre asimgqfdhp niirlegvvt krsfptigvk slsrflragf
      721 lnsiltshpv sgggslppsi ssgrpvmivv eymengslds flrkhdghft viqlvgmlrg
      781 iasgmkylsd mgyvhrdlaa rnilvnsnlm ckvsdfglsr vleddpeaay ttsggkipir
      841 wtapeaiayr kfssasdaws ygivmwevms ygerpywems nqdvilsiee gyrlpapmgc
      901 ptslhqlmlh cwqkernhrp kfsdivnfld klirnpsslh tlvedelvmt dspgevpeyp
      961 lfvsvsdwld sikmgqyknn fmaagfttld mvsrmsiddi rrigvvligh qrrivsslqt
     1021 lrlhmmhiqe kgfhv
//
LOCUS       XP_053937712            1010 aa            linear   VRT 09-MAR-2023
DEFINITION  ephrin type-A receptor 6 isoform X3 [Cuculus canorus].
ACCESSION   XP_053937712
VERSION     XP_053937712.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081737.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1010
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1010
                     /product="ephrin type-A receptor 6 isoform X3"
                     /calculated_mol_wt=113722
     Region          35..206
                     /region_name="EphR_LBD_A6"
                     /note="Ligand Binding Domain of Ephrin type-A Receptor 6;
                     cd10484"
                     /db_xref="CDD:198452"
     Site            order(58,60..64,71..72,74,76,107,109,114..115,157,
                     161..162,165..167,194..196,198)
                     /site_type="other"
                     /note="ephrin binding site [polypeptide binding]"
                     /db_xref="CDD:198452"
     Site            order(332,407,420)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          333..427
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(421..422,424..425)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          443..550
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(443,523,538)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(539..540,542..543)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          567..644
                     /region_name="EphA2_TM"
                     /note="Ephrin type-A receptor 2 transmembrane domain;
                     pfam14575"
                     /db_xref="CDD:464211"
     Region          642..908
                     /region_name="PTKc_EphR_A"
                     /note="Catalytic domain of the Protein Tyrosine Kinases,
                     Class EphA Ephrin Receptors; cd05066"
                     /db_xref="CDD:270651"
     Site            order(653,655..657,661,677,679,725..726,728,772,776..777,
                     779,790,809..813,822,856)
                     /site_type="active"
                     /db_xref="CDD:270651"
     Site            order(653..657,661,677,679,725..728,731..732,776..777,779,
                     790)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270651"
     Site            order(772,776,809..813,822,856)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270651"
     Site            789..815
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270651"
     Region          935..998
                     /region_name="SAM_EPH-A6"
                     /note="SAM domain of EPH-A6 subfamily of tyrosine kinase
                     receptors; cd09547"
                     /db_xref="CDD:188946"
     Site            order(952,985)
                     /site_type="other"
                     /note="putative phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:188946"
     CDS             1..1010
                     /gene="EPHA6"
                     /coded_by="XM_054081737.1:126..3158"
                     /db_xref="GeneID:104056015"
ORIGIN      
        1 mgccevrgwl wrvglflpll tarpaaaghv asnhvvlldt taalgelawk tfplngwdsi
       61 temdehnrpi htyqvcnvme pnqnnwlrtn wisrdaaqki yvemkftlrd cnsipwvlgt
      121 cketfnlyym esdeshgvkf kpnqytkidt iaadesftqm dlgdrilkln tevrevgpin
      181 kkgfylafqd igacialvsv rvyykkcpft vrnlavfpdt iprvdssslv evrgscvksa
      241 eerdtpklyc gadgdwlvpl grcicsvgye evdgschacr pgfykafagn vkcskcpphs
      301 sthieatsvc qcekgyfrae kdpptmactr ppsaprnvif ninetalmle wsppsdtggr
      361 kdltysvick kcgsdasqce icgggirfip rhtglinssv tvldfvshvn ytfeieatng
      421 vselsfspkq ftaitvttdq dapsligmvr kdwasqnsia lswqepdfph gaildyeiky
      481 yekvypriap afwhylrvee heqlsysstr skapsviitg lkpatkyifh irvrtaagys
      541 gysqkfefet gdetsdmaae qgqilviata avggftllvi ltlfflitgr cqwyikakmk
      601 seekrrahlq nghlrfpgak tyidpdtyed pslavhefak eidpsririe rvigagefge
      661 vcsgrlktpg kreipvaikt lkggyldrqr rdflreasim gqfdhpniir legvvtksrp
      721 vmivveymen gsldsflrkh dghftviqlv gmlrgiasgm kylsdmgyvh rdlaarnilv
      781 nsnlmckvsd fglsrvledd peaayttsgg kipirwtape aiayrkfssa sdawsygivm
      841 wevmsygerp ywemsnqdvi lsieegyrlp apmgcptslh qlmlhcwqke rnhrpkfsdi
      901 vnfldklirn psslhtlved elvmtdspge vpeyplfvsv sdwldsikmg qyknnfmaag
      961 fttldmvsrm siddirrigv vlighqrriv sslqtlrlhm mhiqekgfhv
//
LOCUS       XP_053937721             939 aa            linear   VRT 09-MAR-2023
DEFINITION  ephrin type-A receptor 6 isoform X4 [Cuculus canorus].
ACCESSION   XP_053937721
VERSION     XP_053937721.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081746.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..939
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..939
                     /product="ephrin type-A receptor 6 isoform X4"
                     /calculated_mol_wt=104957
     Region          35..206
                     /region_name="EphR_LBD_A6"
                     /note="Ligand Binding Domain of Ephrin type-A Receptor 6;
                     cd10484"
                     /db_xref="CDD:198452"
     Site            order(58,60..64,71..72,74,76,107,109,114..115,157,
                     161..162,165..167,194..196,198)
                     /site_type="other"
                     /note="ephrin binding site [polypeptide binding]"
                     /db_xref="CDD:198452"
     Region          274..312
                     /region_name="Ephrin_rec_like"
                     /note="Tyrosine-protein kinase ephrin type A/B
                     receptor-like; pfam07699"
                     /db_xref="CDD:429604"
     Site            order(332,407,420)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          333..427
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(421..422,424..425)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          455..532
                     /region_name="EphA2_TM"
                     /note="Ephrin type-A receptor 2 transmembrane domain;
                     pfam14575"
                     /db_xref="CDD:464211"
     Region          530..837
                     /region_name="PTKc_EphR_A"
                     /note="Catalytic domain of the Protein Tyrosine Kinases,
                     Class EphA Ephrin Receptors; cd05066"
                     /db_xref="CDD:270651"
     Site            order(541,543..545,549,565,567,654..655,657,701,705..706,
                     708,719,738..742,751,785)
                     /site_type="active"
                     /db_xref="CDD:270651"
     Site            order(541..545,549,565,567,654..657,660..661,705..706,708,
                     719)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270651"
     Site            order(701,705,738..742,751,785)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270651"
     Site            718..744
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270651"
     Region          864..927
                     /region_name="SAM_EPH-A6"
                     /note="SAM domain of EPH-A6 subfamily of tyrosine kinase
                     receptors; cd09547"
                     /db_xref="CDD:188946"
     Site            order(881,914)
                     /site_type="other"
                     /note="putative phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:188946"
     CDS             1..939
                     /gene="EPHA6"
                     /coded_by="XM_054081746.1:126..2945"
                     /db_xref="GeneID:104056015"
ORIGIN      
        1 mgccevrgwl wrvglflpll tarpaaaghv asnhvvlldt taalgelawk tfplngwdsi
       61 temdehnrpi htyqvcnvme pnqnnwlrtn wisrdaaqki yvemkftlrd cnsipwvlgt
      121 cketfnlyym esdeshgvkf kpnqytkidt iaadesftqm dlgdrilkln tevrevgpin
      181 kkgfylafqd igacialvsv rvyykkcpft vrnlavfpdt iprvdssslv evrgscvksa
      241 eerdtpklyc gadgdwlvpl grcicsvgye evdgschacr pgfykafagn vkcskcpphs
      301 sthieatsvc qcekgyfrae kdpptmactr ppsaprnvif ninetalmle wsppsdtggr
      361 kdltysvick kcgsdasqce icgggirfip rhtglinssv tvldfvshvn ytfeieatng
      421 vselsfspkq ftaitvttdq dasdmaaeqg qilviataav ggftllvilt lfflitgrcq
      481 wyikakmkse ekrrahlqng hlrfpgakty idpdtyedps lavhefakei dpsririerv
      541 igagefgevc sgrlktpgkr eipvaiktlk ggyldrqrrd flreasimgq fdhpniirle
      601 gvvtkrsfpt igvkslsrfl ragflnsilt shpvsgggsl ppsissgrpv mivveymeng
      661 sldsflrkhd ghftviqlvg mlrgiasgmk ylsdmgyvhr dlaarnilvn snlmckvsdf
      721 glsrvleddp eaayttsggk ipirwtapea iayrkfssas dawsygivmw evmsygerpy
      781 wemsnqdvil sieegyrlpa pmgcptslhq lmlhcwqker nhrpkfsdiv nfldklirnp
      841 sslhtlvede lvmtdspgev peyplfvsvs dwldsikmgq yknnfmaagf ttldmvsrms
      901 iddirrigvv lighqrrivs slqtlrlhmm hiqekgfhv
//
LOCUS       XP_053937728             553 aa            linear   VRT 09-MAR-2023
DEFINITION  ephrin type-A receptor 6 isoform X5 [Cuculus canorus].
ACCESSION   XP_053937728
VERSION     XP_053937728.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081753.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..553
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..553
                     /product="ephrin type-A receptor 6 isoform X5"
                     /calculated_mol_wt=62110
     Region          <2..52
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(41..42,44..45)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          69..146
                     /region_name="EphA2_TM"
                     /note="Ephrin type-A receptor 2 transmembrane domain;
                     pfam14575"
                     /db_xref="CDD:464211"
     Region          144..451
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(155..158,161,163,179,181,211,268..271,315,319..320,
                     322,332..333)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270870"
     Region          478..541
                     /region_name="SAM_EPH-A6"
                     /note="SAM domain of EPH-A6 subfamily of tyrosine kinase
                     receptors; cd09547"
                     /db_xref="CDD:188946"
     Site            order(495,528)
                     /site_type="other"
                     /note="putative phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:188946"
     CDS             1..553
                     /gene="EPHA6"
                     /coded_by="XM_054081753.1:75..1736"
                     /db_xref="GeneID:104056015"
ORIGIN      
        1 meheqlsyss trskapsvii tglkpatkyi fhirvrtaag ysgysqkfef etgdetsdma
       61 aeqgqilvia taavggftll viltlfflit grcqwyikak mkseekrrah lqnghlrfpg
      121 aktyidpdty edpslavhef akeidpsrir iervigagef gevcsgrlkt pgkreipvai
      181 ktlkggyldr qrrdflreas imgqfdhpni irlegvvtkr sfptigvksl srflragfln
      241 siltshpvsg ggslppsiss grpvmivvey mengsldsfl rkhdghftvi qlvgmlrgia
      301 sgmkylsdmg yvhrdlaarn ilvnsnlmck vsdfglsrvl eddpeaaytt sggkipirwt
      361 apeaiayrkf ssasdawsyg ivmwevmsyg erpywemsnq dvilsieegy rlpapmgcpt
      421 slhqlmlhcw qkernhrpkf sdivnfldkl irnpsslhtl vedelvmtds pgevpeyplf
      481 vsvsdwldsi kmgqyknnfm aagfttldmv srmsiddirr igvvlighqr rivsslqtlr
      541 lhmmhiqekg fhv
//
LOCUS       XP_053937735             443 aa            linear   VRT 09-MAR-2023
DEFINITION  ephrin type-A receptor 6 isoform X6 [Cuculus canorus].
ACCESSION   XP_053937735
VERSION     XP_053937735.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081760.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..443
                     /product="ephrin type-A receptor 6 isoform X6"
                     /calculated_mol_wt=49089
     Region          35..206
                     /region_name="EphR_LBD_A6"
                     /note="Ligand Binding Domain of Ephrin type-A Receptor 6;
                     cd10484"
                     /db_xref="CDD:198452"
     Site            order(58,60..64,71..72,74,76,107,109,114..115,157,
                     161..162,165..167,194..196,198)
                     /site_type="other"
                     /note="ephrin binding site [polypeptide binding]"
                     /db_xref="CDD:198452"
     Region          274..312
                     /region_name="Ephrin_rec_like"
                     /note="Tyrosine-protein kinase ephrin type A/B
                     receptor-like; pfam07699"
                     /db_xref="CDD:429604"
     Site            order(332,407,420)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          333..427
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(421..422,424..425)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..443
                     /gene="EPHA6"
                     /coded_by="XM_054081760.1:126..1457"
                     /db_xref="GeneID:104056015"
ORIGIN      
        1 mgccevrgwl wrvglflpll tarpaaaghv asnhvvlldt taalgelawk tfplngwdsi
       61 temdehnrpi htyqvcnvme pnqnnwlrtn wisrdaaqki yvemkftlrd cnsipwvlgt
      121 cketfnlyym esdeshgvkf kpnqytkidt iaadesftqm dlgdrilkln tevrevgpin
      181 kkgfylafqd igacialvsv rvyykkcpft vrnlavfpdt iprvdssslv evrgscvksa
      241 eerdtpklyc gadgdwlvpl grcicsvgye evdgschacr pgfykafagn vkcskcpphs
      301 sthieatsvc qcekgyfrae kdpptmactr ppsaprnvif ninetalmle wsppsdtggr
      361 kdltysvick kcgsdasqce icgggirfip rhtglinssv tvldfvshvn ytfeieatng
      421 vselsfspkq ftaitvttdq dga
//
LOCUS       XP_053937742             994 aa            linear   VRT 09-MAR-2023
DEFINITION  ephrin type-A receptor 6 isoform X7 [Cuculus canorus].
ACCESSION   XP_053937742
VERSION     XP_053937742.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081767.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..994
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..994
                     /product="ephrin type-A receptor 6 isoform X7"
                     /calculated_mol_wt=111723
     Region          35..206
                     /region_name="EphR_LBD_A6"
                     /note="Ligand Binding Domain of Ephrin type-A Receptor 6;
                     cd10484"
                     /db_xref="CDD:198452"
     Site            order(58,60..64,71..72,74,76,107,109,114..115,157,
                     161..162,165..167,194..196,198)
                     /site_type="other"
                     /note="ephrin binding site [polypeptide binding]"
                     /db_xref="CDD:198452"
     Site            order(332,407,420)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          333..427
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(421..422,424..425)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          443..534
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(443,507,522)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(523..524,526..527)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          551..628
                     /region_name="EphA2_TM"
                     /note="Ephrin type-A receptor 2 transmembrane domain;
                     pfam14575"
                     /db_xref="CDD:464211"
     Region          626..892
                     /region_name="PTKc_EphR_A"
                     /note="Catalytic domain of the Protein Tyrosine Kinases,
                     Class EphA Ephrin Receptors; cd05066"
                     /db_xref="CDD:270651"
     Site            order(637,639..641,645,661,663,709..710,712,756,760..761,
                     763,774,793..797,806,840)
                     /site_type="active"
                     /db_xref="CDD:270651"
     Site            order(637..641,645,661,663,709..712,715..716,760..761,763,
                     774)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270651"
     Site            order(756,760,793..797,806,840)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270651"
     Site            773..799
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270651"
     Region          919..982
                     /region_name="SAM_EPH-A6"
                     /note="SAM domain of EPH-A6 subfamily of tyrosine kinase
                     receptors; cd09547"
                     /db_xref="CDD:188946"
     Site            order(936,969)
                     /site_type="other"
                     /note="putative phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:188946"
     CDS             1..994
                     /gene="EPHA6"
                     /coded_by="XM_054081767.1:126..3110"
                     /db_xref="GeneID:104056015"
ORIGIN      
        1 mgccevrgwl wrvglflpll tarpaaaghv asnhvvlldt taalgelawk tfplngwdsi
       61 temdehnrpi htyqvcnvme pnqnnwlrtn wisrdaaqki yvemkftlrd cnsipwvlgt
      121 cketfnlyym esdeshgvkf kpnqytkidt iaadesftqm dlgdrilkln tevrevgpin
      181 kkgfylafqd igacialvsv rvyykkcpft vrnlavfpdt iprvdssslv evrgscvksa
      241 eerdtpklyc gadgdwlvpl grcicsvgye evdgschacr pgfykafagn vkcskcpphs
      301 sthieatsvc qcekgyfrae kdpptmactr ppsaprnvif ninetalmle wsppsdtggr
      361 kdltysvick kcgsdasqce icgggirfip rhtglinssv tvldfvshvn ytfeieatng
      421 vselsfspkq ftaitvttdq dapsligmvr kdwasqnsia lswqepdfph gaildyeiky
      481 yekeheqlsy sstrskapsv iitglkpatk yifhirvrta agysgysqkf efetgdetsd
      541 maaeqgqilv iataavggft llviltlffl itgrcqwyik akmkseekrr ahlqnghlrf
      601 pgaktyidpd tyedpslavh efakeidpsr iriervigag efgevcsgrl ktpgkreipv
      661 aiktlkggyl drqrrdflre asimgqfdhp niirlegvvt ksrpvmivve ymengsldsf
      721 lrkhdghftv iqlvgmlrgi asgmkylsdm gyvhrdlaar nilvnsnlmc kvsdfglsrv
      781 leddpeaayt tsggkipirw tapeaiayrk fssasdawsy givmwevmsy gerpywemsn
      841 qdvilsieeg yrlpapmgcp tslhqlmlhc wqkernhrpk fsdivnfldk lirnpsslht
      901 lvedelvmtd spgevpeypl fvsvsdwlds ikmgqyknnf maagfttldm vsrmsiddir
      961 rigvvlighq rrivsslqtl rlhmmhiqek gfhv
//
LOCUS       XP_053937754             570 aa            linear   VRT 09-MAR-2023
DEFINITION  optineurin isoform X1 [Cuculus canorus].
ACCESSION   XP_053937754
VERSION     XP_053937754.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081779.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..570
                     /product="optineurin isoform X1"
                     /calculated_mol_wt=65600
     Region          49..115
                     /region_name="NEMO"
                     /note="NF-kappa-B essential modulator NEMO; pfam11577"
                     /db_xref="CDD:431942"
     Region          <142..>492
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          401..500
                     /region_name="CC2-LZ"
                     /note="Leucine zipper of domain CC2 of NEMO, NF-kappa-B
                     essential modulator; pfam16516"
                     /db_xref="CDD:465155"
     Region          546..569
                     /region_name="zf_C2H2_10"
                     /note="C2H2 type zinc-finger; pfam18414"
                     /db_xref="CDD:436483"
     CDS             1..570
                     /gene="OPTN"
                     /coded_by="XM_054081779.1:16..1728"
                     /db_xref="GeneID:104066252"
ORIGIN      
        1 mtretgelda semsrkfksh saengehpgs kmengmdsma apalstytpe emvqqmkeli
       61 tennelkeam klhnqamkdr yeelsiwrek qkeerefyel kfkeakqcll akcieneqlq
      121 qqlqslkere egaemegcva pekevrqlks qvqrlqaeka dllaiiselq vklnissaed
      181 sfveigmneg elnrtakehq essgemtsni alyvrsktad elkkleseel tvsqllcclr
      241 netqkreele kelqdhkerl seleketnnf lesgtqteqe eeesseavgs evatlnlqvc
      301 alfkelqeah eklkeaeliq kklqekcqvl erkssaaase leekqqliyt vkklelqves
      361 iqaevkleqa ktheekaryn slqdtyskll peltearkti delklkeldr vdkvvverln
      421 akvelaeqal aakqlridem kqiiakqeed letmavlraq mevycsdfha eraarekihe
      481 ekeqlaaqla ylikeqqnle disrntlaem qnrhgarppd rehsphfvqt gpgshdwpeq
      541 rnisvyscpk ceeilpdldt lqihvmecin
//
LOCUS       XP_053937763             569 aa            linear   VRT 09-MAR-2023
DEFINITION  optineurin isoform X2 [Cuculus canorus].
ACCESSION   XP_053937763
VERSION     XP_053937763.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081788.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..569
                     /product="optineurin isoform X2"
                     /calculated_mol_wt=65444
     Region          49..115
                     /region_name="NEMO"
                     /note="NF-kappa-B essential modulator NEMO; pfam11577"
                     /db_xref="CDD:431942"
     Region          <142..>491
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          400..499
                     /region_name="CC2-LZ"
                     /note="Leucine zipper of domain CC2 of NEMO, NF-kappa-B
                     essential modulator; pfam16516"
                     /db_xref="CDD:465155"
     Region          545..568
                     /region_name="zf_C2H2_10"
                     /note="C2H2 type zinc-finger; pfam18414"
                     /db_xref="CDD:436483"
     CDS             1..569
                     /gene="OPTN"
                     /coded_by="XM_054081788.1:16..1725"
                     /db_xref="GeneID:104066252"
ORIGIN      
        1 mtretgelda semsrkfksh saengehpgs kmengmdsma apalstytpe emvqqmkeli
       61 tennelkeam klhnqamkdr yeelsiwrek qkeerefyel kfkeakqcll akcieneqlq
      121 qqlqslkere egaemegcva pekevrqlks qvqrlqaeka dllaiiselq vklnissaed
      181 sfveigmneg elnrtakehq essgemtsni alyvsktade lkkleseelt vsqllcclrn
      241 etqkreelek elqdhkerls eleketnnfl esgtqteqee eesseavgse vatlnlqvca
      301 lfkelqeahe klkeaeliqk klqekcqvle rkssaaasel eekqqliytv kklelqvesi
      361 qaevkleqak theekaryns lqdtyskllp eltearktid elklkeldrv dkvvverlna
      421 kvelaeqala akqlridemk qiiakqeedl etmavlraqm evycsdfhae raarekihee
      481 keqlaaqlay likeqqnled isrntlaemq nrhgarppdr ehsphfvqtg pgshdwpeqr
      541 nisvyscpkc eeilpdldtl qihvmecin
//
LOCUS       XP_053937772             558 aa            linear   VRT 09-MAR-2023
DEFINITION  optineurin isoform X3 [Cuculus canorus].
ACCESSION   XP_053937772
VERSION     XP_053937772.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081797.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..558
                     /product="optineurin isoform X3"
                     /calculated_mol_wt=64280
     Region          37..103
                     /region_name="NEMO"
                     /note="NF-kappa-B essential modulator NEMO; pfam11577"
                     /db_xref="CDD:431942"
     Region          <130..>480
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          389..488
                     /region_name="CC2-LZ"
                     /note="Leucine zipper of domain CC2 of NEMO, NF-kappa-B
                     essential modulator; pfam16516"
                     /db_xref="CDD:465155"
     Region          534..557
                     /region_name="zf_C2H2_10"
                     /note="C2H2 type zinc-finger; pfam18414"
                     /db_xref="CDD:436483"
     CDS             1..558
                     /gene="OPTN"
                     /coded_by="XM_054081797.1:75..1751"
                     /db_xref="GeneID:104066252"
ORIGIN      
        1 msrkfkshsa engehpgskm engmdsmaap alstytpeem vqqmkelite nnelkeamkl
       61 hnqamkdrye elsiwrekqk eerefyelkf keakqcllak cieneqlqqq lqslkereeg
      121 aemegcvape kevrqlksqv qrlqaekadl laiiselqvk lnissaedsf veigmnegel
      181 nrtakehqes sgemtsnial yvrsktadel kkleseeltv sqllcclrne tqkreeleke
      241 lqdhkerlse leketnnfle sgtqteqeee esseavgsev atlnlqvcal fkelqeahek
      301 lkeaeliqkk lqekcqvler kssaaasele ekqqliytvk klelqvesiq aevkleqakt
      361 heekarynsl qdtyskllpe ltearktide lklkeldrvd kvvverlnak velaeqalaa
      421 kqlridemkq iiakqeedle tmavlraqme vycsdfhaer aarekiheek eqlaaqlayl
      481 ikeqqnledi srntlaemqn rhgarppdre hsphfvqtgp gshdwpeqrn isvyscpkce
      541 eilpdldtlq ihvmecin
//
LOCUS       XP_053937783             502 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-1,4-mannosyl-glycoprotein
            4-beta-N-acetylglucosaminyltransferase [Cuculus canorus].
ACCESSION   XP_053937783
VERSION     XP_053937783.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081808.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..502
                     /product="beta-1,4-mannosyl-glycoprotein
                     4-beta-N-acetylglucosaminyltransferase"
                     /calculated_mol_wt=57543
     Region          194..491
                     /region_name="Glyco_transf_17"
                     /note="Glycosyltransferase family 17; pfam04724"
                     /db_xref="CDD:428090"
     CDS             1..502
                     /gene="MGAT3"
                     /coded_by="XM_054081808.1:246..1754"
                     /db_xref="GeneID:104055517"
ORIGIN      
        1 mkmrrhklfl tlcmaglcli sflhflkals yvtfprelas lspnlvssff wnnapvtpqv
       61 spepggaefl rtplyshspl lqplspsras eelhkvefvl sedtteyfvr tkaggvcfkp
      121 gtkvlekppv gaqpeervdg aasgrlgrkp lsangtkrrk wvecvclpgw hgpscgvptv
      181 vqysnlptkd rlvpreiprr vinainvnhe fdlldvrfhe lgdvvdtfvv cesnftayge
      241 prplkfreml lngsfdyirh kllyvfldhf ppggrqdgwi addylrtflt rdgisrlrnl
      301 rpddvfiidd adeipardgv lflklydgwt epfafhmrks lygffwkqpg tlevvsgctm
      361 gmlqavyatd girlrrreyy tmpgfrqyen stghilvqws lgsplhfagw hcswcftpeg
      421 iyfklvsaqn gdfprwgdye dkrdlnyire lirtggwfdg ttqeyppadp keqmyapkyl
      481 lknyqrfryl lenpyrkaeg tg
//
LOCUS       XP_053937791             502 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-1,4-mannosyl-glycoprotein
            4-beta-N-acetylglucosaminyltransferase [Cuculus canorus].
ACCESSION   XP_053937791
VERSION     XP_053937791.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081816.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..502
                     /product="beta-1,4-mannosyl-glycoprotein
                     4-beta-N-acetylglucosaminyltransferase"
                     /calculated_mol_wt=57543
     Region          194..491
                     /region_name="Glyco_transf_17"
                     /note="Glycosyltransferase family 17; pfam04724"
                     /db_xref="CDD:428090"
     CDS             1..502
                     /gene="MGAT3"
                     /coded_by="XM_054081816.1:5107..6615"
                     /db_xref="GeneID:104055517"
ORIGIN      
        1 mkmrrhklfl tlcmaglcli sflhflkals yvtfprelas lspnlvssff wnnapvtpqv
       61 spepggaefl rtplyshspl lqplspsras eelhkvefvl sedtteyfvr tkaggvcfkp
      121 gtkvlekppv gaqpeervdg aasgrlgrkp lsangtkrrk wvecvclpgw hgpscgvptv
      181 vqysnlptkd rlvpreiprr vinainvnhe fdlldvrfhe lgdvvdtfvv cesnftayge
      241 prplkfreml lngsfdyirh kllyvfldhf ppggrqdgwi addylrtflt rdgisrlrnl
      301 rpddvfiidd adeipardgv lflklydgwt epfafhmrks lygffwkqpg tlevvsgctm
      361 gmlqavyatd girlrrreyy tmpgfrqyen stghilvqws lgsplhfagw hcswcftpeg
      421 iyfklvsaqn gdfprwgdye dkrdlnyire lirtggwfdg ttqeyppadp keqmyapkyl
      481 lknyqrfryl lenpyrkaeg tg
//
LOCUS       XP_053937799             502 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-1,4-mannosyl-glycoprotein
            4-beta-N-acetylglucosaminyltransferase [Cuculus canorus].
ACCESSION   XP_053937799
VERSION     XP_053937799.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081824.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..502
                     /product="beta-1,4-mannosyl-glycoprotein
                     4-beta-N-acetylglucosaminyltransferase"
                     /calculated_mol_wt=57543
     Region          194..491
                     /region_name="Glyco_transf_17"
                     /note="Glycosyltransferase family 17; pfam04724"
                     /db_xref="CDD:428090"
     CDS             1..502
                     /gene="MGAT3"
                     /coded_by="XM_054081824.1:190..1698"
                     /db_xref="GeneID:104055517"
ORIGIN      
        1 mkmrrhklfl tlcmaglcli sflhflkals yvtfprelas lspnlvssff wnnapvtpqv
       61 spepggaefl rtplyshspl lqplspsras eelhkvefvl sedtteyfvr tkaggvcfkp
      121 gtkvlekppv gaqpeervdg aasgrlgrkp lsangtkrrk wvecvclpgw hgpscgvptv
      181 vqysnlptkd rlvpreiprr vinainvnhe fdlldvrfhe lgdvvdtfvv cesnftayge
      241 prplkfreml lngsfdyirh kllyvfldhf ppggrqdgwi addylrtflt rdgisrlrnl
      301 rpddvfiidd adeipardgv lflklydgwt epfafhmrks lygffwkqpg tlevvsgctm
      361 gmlqavyatd girlrrreyy tmpgfrqyen stghilvqws lgsplhfagw hcswcftpeg
      421 iyfklvsaqn gdfprwgdye dkrdlnyire lirtggwfdg ttqeyppadp keqmyapkyl
      481 lknyqrfryl lenpyrkaeg tg
//
LOCUS       XP_053937805             502 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-1,4-mannosyl-glycoprotein
            4-beta-N-acetylglucosaminyltransferase [Cuculus canorus].
ACCESSION   XP_053937805
VERSION     XP_053937805.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081830.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..502
                     /product="beta-1,4-mannosyl-glycoprotein
                     4-beta-N-acetylglucosaminyltransferase"
                     /calculated_mol_wt=57543
     Region          194..491
                     /region_name="Glyco_transf_17"
                     /note="Glycosyltransferase family 17; pfam04724"
                     /db_xref="CDD:428090"
     CDS             1..502
                     /gene="MGAT3"
                     /coded_by="XM_054081830.1:363..1871"
                     /db_xref="GeneID:104055517"
ORIGIN      
        1 mkmrrhklfl tlcmaglcli sflhflkals yvtfprelas lspnlvssff wnnapvtpqv
       61 spepggaefl rtplyshspl lqplspsras eelhkvefvl sedtteyfvr tkaggvcfkp
      121 gtkvlekppv gaqpeervdg aasgrlgrkp lsangtkrrk wvecvclpgw hgpscgvptv
      181 vqysnlptkd rlvpreiprr vinainvnhe fdlldvrfhe lgdvvdtfvv cesnftayge
      241 prplkfreml lngsfdyirh kllyvfldhf ppggrqdgwi addylrtflt rdgisrlrnl
      301 rpddvfiidd adeipardgv lflklydgwt epfafhmrks lygffwkqpg tlevvsgctm
      361 gmlqavyatd girlrrreyy tmpgfrqyen stghilvqws lgsplhfagw hcswcftpeg
      421 iyfklvsaqn gdfprwgdye dkrdlnyire lirtggwfdg ttqeyppadp keqmyapkyl
      481 lknyqrfryl lenpyrkaeg tg
//
LOCUS       XP_053937813             502 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-1,4-mannosyl-glycoprotein
            4-beta-N-acetylglucosaminyltransferase [Cuculus canorus].
ACCESSION   XP_053937813
VERSION     XP_053937813.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081838.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..502
                     /product="beta-1,4-mannosyl-glycoprotein
                     4-beta-N-acetylglucosaminyltransferase"
                     /calculated_mol_wt=57543
     Region          194..491
                     /region_name="Glyco_transf_17"
                     /note="Glycosyltransferase family 17; pfam04724"
                     /db_xref="CDD:428090"
     CDS             1..502
                     /gene="MGAT3"
                     /coded_by="XM_054081838.1:21..1529"
                     /db_xref="GeneID:104055517"
ORIGIN      
        1 mkmrrhklfl tlcmaglcli sflhflkals yvtfprelas lspnlvssff wnnapvtpqv
       61 spepggaefl rtplyshspl lqplspsras eelhkvefvl sedtteyfvr tkaggvcfkp
      121 gtkvlekppv gaqpeervdg aasgrlgrkp lsangtkrrk wvecvclpgw hgpscgvptv
      181 vqysnlptkd rlvpreiprr vinainvnhe fdlldvrfhe lgdvvdtfvv cesnftayge
      241 prplkfreml lngsfdyirh kllyvfldhf ppggrqdgwi addylrtflt rdgisrlrnl
      301 rpddvfiidd adeipardgv lflklydgwt epfafhmrks lygffwkqpg tlevvsgctm
      361 gmlqavyatd girlrrreyy tmpgfrqyen stghilvqws lgsplhfagw hcswcftpeg
      421 iyfklvsaqn gdfprwgdye dkrdlnyire lirtggwfdg ttqeyppadp keqmyapkyl
      481 lknyqrfryl lenpyrkaeg tg
//
LOCUS       XP_053937821             562 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: zinc finger protein ZIC 5 [Cuculus canorus].
ACCESSION   XP_053937821
VERSION     XP_053937821.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081846.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..562
                     /product="LOW QUALITY PROTEIN: zinc finger protein ZIC 5"
                     /calculated_mol_wt=58820
     Region          302..355
                     /region_name="zf_ZIC"
                     /note="Zic proteins zinc finger domain; pfam18366"
                     /db_xref="CDD:436441"
     Region          <357..477
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          367..387
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(372,374,376,378..379,382..383,386,402,404,408..409,
                     412..413,416,432,434,436,438..439,442..443,446)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          395..417
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          425..447
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          455..477
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..562
                     /gene="ZIC5"
                     /coded_by="XM_054081846.1:193..1881"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon;
                     deleted 2 bases in 1 codon"
                     /db_xref="GeneID:104057313"
ORIGIN      
        1 mflkagrgkk ittasvdglg cvvmepplsk rnptlrladl aaaqphphqn mtgfpglgnh
       61 hvhphhaahl hpgdaggdpg galtplgpeh maeptalklt pealtaaaaa xsplpppppp
      121 pppppppppp pppppappaa alpgfpsgga agrefllrre lpaaavhgal geqhppagsp
      181 hlppppphgv fisaagtyga sdgahaafah geqgapagrh pplngqmrlg laagelygra
      241 eahygaaaas ssalqgygsv nlslaaasgh ghphhphphh hhhhhhhghv gaagaflrym
      301 rqpikqelic kwidrepppp pppppspggr kpcsktfstm qelvshvtve hvggpeqssh
      361 vcyweecpre gkpfkakykl inhirvhtge kpfpcpfpgc gkvfarsenl kihkrthtge
      421 kpfkcefdgc erkfanssdr kkhshvhtsd kpyyckirgc dksythpssl rkhmkihcks
      481 pppspppgsq glpgppdgpl spdgdtapra aalsppvtnl sewyvcqagg ggrrprtpss
      541 ggtsplseed eshrtsggrt ap
//
LOCUS       XP_009555798             284 aa            linear   VRT 09-MAR-2023
DEFINITION  GPI-linked NAD(P)(+)--arginine ADP-ribosyltransferase 1, partial
            [Cuculus canorus].
ACCESSION   XP_009555798
VERSION     XP_009555798.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557503.2
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555798.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 11% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the amino end.
FEATURES             Location/Qualifiers
     source          1..284
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         <1..284
                     /product="GPI-linked NAD(P)(+)--arginine
                     ADP-ribosyltransferase 1"
     Region          18..231
                     /region_name="ART"
                     /note="NAD:arginine ADP-ribosyltransferase; pfam01129"
                     /db_xref="CDD:279473"
     CDS             1..284
                     /gene="ART1"
                     /coded_by="XM_009557503.2:<1..855"
                     /db_xref="GeneID:104056262"
ORIGIN      
        1 ttttssplda vpmaevpldl attsfddryv gcagamdeel edlnrtefst ngvyaqawtl
       61 aaaewrsrhg rvppvlrpeh avallaytkh gplfrafnaa vredgrshrh yldnfrfkaf
      121 hfllsealrv lrgtrssrch rvyrgvhgir ftaqrhqrvr fgqftsaslr eesalafghd
      181 tvfsvetcyg vpikdfsfyp eedevlippf evfevtdvts ggggalielr srdadsaync
      241 ewvkerrcrd rpcdlgagws vrgdpsllwg llmvtttlva tegp
//
LOCUS       XP_053937840             456 aa            linear   VRT 09-MAR-2023
DEFINITION  phospholipase A1 member A isoform X1 [Cuculus canorus].
ACCESSION   XP_053937840
VERSION     XP_053937840.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081865.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..456
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..456
                     /product="phospholipase A1 member A isoform X1"
                     /calculated_mol_wt=49508
     Region          35..336
                     /region_name="Lipase"
                     /note="pfam00151"
                     /db_xref="CDD:395099"
     CDS             1..456
                     /gene="PLA1A"
                     /coded_by="XM_054081865.1:118..1488"
                     /db_xref="GeneID:104055860"
ORIGIN      
        1 mvedlkrklf ivpavlllls saqagntdrv lgrnctdfqt anflrgsklk vqfllftsss
       61 pscgelvlad dgiknssfns sletkiiihg fralgtkpsw ieglvrailh ishvnviavd
      121 wvygstgayp savenvtqla lsisqfiskl lalgvsgtsi hiigvslgah vgglvgqfhg
      181 gqlgritgld pagpkytras peerldpgda lfveaihtds dnfgiripvg hidyfvnggk
      241 dqpgcprfis agykylicdh mravhlyvsa lkhscplvaf pcashqdfln grcldcvdpf
      301 lsscprigll eqagvsvrkl pkevkvylmt spsapfcvhh slvefhlqkk rniitsieit
      361 lsgnntketa kiiipkhket gkrllahrvp lcqinsvtlk yvpknqfwrk dessivgefc
      421 aaslplntnr tmsclpwnlt lpsntdisyv lpaaca
//
LOCUS       XP_053937849             456 aa            linear   VRT 09-MAR-2023
DEFINITION  phospholipase A1 member A isoform X1 [Cuculus canorus].
ACCESSION   XP_053937849
VERSION     XP_053937849.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081874.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..456
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..456
                     /product="phospholipase A1 member A isoform X1"
                     /calculated_mol_wt=49508
     Region          35..336
                     /region_name="Lipase"
                     /note="pfam00151"
                     /db_xref="CDD:395099"
     CDS             1..456
                     /gene="PLA1A"
                     /coded_by="XM_054081874.1:99..1469"
                     /db_xref="GeneID:104055860"
ORIGIN      
        1 mvedlkrklf ivpavlllls saqagntdrv lgrnctdfqt anflrgsklk vqfllftsss
       61 pscgelvlad dgiknssfns sletkiiihg fralgtkpsw ieglvrailh ishvnviavd
      121 wvygstgayp savenvtqla lsisqfiskl lalgvsgtsi hiigvslgah vgglvgqfhg
      181 gqlgritgld pagpkytras peerldpgda lfveaihtds dnfgiripvg hidyfvnggk
      241 dqpgcprfis agykylicdh mravhlyvsa lkhscplvaf pcashqdfln grcldcvdpf
      301 lsscprigll eqagvsvrkl pkevkvylmt spsapfcvhh slvefhlqkk rniitsieit
      361 lsgnntketa kiiipkhket gkrllahrvp lcqinsvtlk yvpknqfwrk dessivgefc
      421 aaslplntnr tmsclpwnlt lpsntdisyv lpaaca
//
LOCUS       XP_053937853             456 aa            linear   VRT 09-MAR-2023
DEFINITION  phospholipase A1 member A isoform X1 [Cuculus canorus].
ACCESSION   XP_053937853
VERSION     XP_053937853.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081878.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..456
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..456
                     /product="phospholipase A1 member A isoform X1"
                     /calculated_mol_wt=49508
     Region          35..336
                     /region_name="Lipase"
                     /note="pfam00151"
                     /db_xref="CDD:395099"
     CDS             1..456
                     /gene="PLA1A"
                     /coded_by="XM_054081878.1:53..1423"
                     /db_xref="GeneID:104055860"
ORIGIN      
        1 mvedlkrklf ivpavlllls saqagntdrv lgrnctdfqt anflrgsklk vqfllftsss
       61 pscgelvlad dgiknssfns sletkiiihg fralgtkpsw ieglvrailh ishvnviavd
      121 wvygstgayp savenvtqla lsisqfiskl lalgvsgtsi hiigvslgah vgglvgqfhg
      181 gqlgritgld pagpkytras peerldpgda lfveaihtds dnfgiripvg hidyfvnggk
      241 dqpgcprfis agykylicdh mravhlyvsa lkhscplvaf pcashqdfln grcldcvdpf
      301 lsscprigll eqagvsvrkl pkevkvylmt spsapfcvhh slvefhlqkk rniitsieit
      361 lsgnntketa kiiipkhket gkrllahrvp lcqinsvtlk yvpknqfwrk dessivgefc
      421 aaslplntnr tmsclpwnlt lpsntdisyv lpaaca
//
LOCUS       XP_053937862             456 aa            linear   VRT 09-MAR-2023
DEFINITION  phospholipase A1 member A isoform X1 [Cuculus canorus].
ACCESSION   XP_053937862
VERSION     XP_053937862.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081887.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..456
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..456
                     /product="phospholipase A1 member A isoform X1"
                     /calculated_mol_wt=49508
     Region          35..336
                     /region_name="Lipase"
                     /note="pfam00151"
                     /db_xref="CDD:395099"
     CDS             1..456
                     /gene="PLA1A"
                     /coded_by="XM_054081887.1:36..1406"
                     /db_xref="GeneID:104055860"
ORIGIN      
        1 mvedlkrklf ivpavlllls saqagntdrv lgrnctdfqt anflrgsklk vqfllftsss
       61 pscgelvlad dgiknssfns sletkiiihg fralgtkpsw ieglvrailh ishvnviavd
      121 wvygstgayp savenvtqla lsisqfiskl lalgvsgtsi hiigvslgah vgglvgqfhg
      181 gqlgritgld pagpkytras peerldpgda lfveaihtds dnfgiripvg hidyfvnggk
      241 dqpgcprfis agykylicdh mravhlyvsa lkhscplvaf pcashqdfln grcldcvdpf
      301 lsscprigll eqagvsvrkl pkevkvylmt spsapfcvhh slvefhlqkk rniitsieit
      361 lsgnntketa kiiipkhket gkrllahrvp lcqinsvtlk yvpknqfwrk dessivgefc
      421 aaslplntnr tmsclpwnlt lpsntdisyv lpaaca
//
LOCUS       XP_053937871             400 aa            linear   VRT 09-MAR-2023
DEFINITION  phospholipase A1 member A isoform X2 [Cuculus canorus].
ACCESSION   XP_053937871
VERSION     XP_053937871.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081896.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..400
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..400
                     /product="phospholipase A1 member A isoform X2"
                     /calculated_mol_wt=43213
     Region          49..>249
                     /region_name="Pancreat_lipase_like"
                     /note="Pancreatic lipase-like enzymes. Lipases are
                     esterases that can hydrolyze long-chain acyl-triglycerides
                     into di- and monoglycerides, glycerol, and free fatty
                     acids at a water/lipid interface. A typical feature of
                     lipases is 'interfacial activation,' the...; cd00707"
                     /db_xref="CDD:238363"
     Site            164..168
                     /site_type="active"
                     /note="nucleophilic elbow [active]"
                     /db_xref="CDD:238363"
     CDS             1..400
                     /gene="PLA1A"
                     /coded_by="XM_054081896.1:118..1320"
                     /db_xref="GeneID:104055860"
ORIGIN      
        1 mvedlkrklf ivpavlllls saqagntdrv lgrnctdfqt anflrgsklk vqfllftsss
       61 pscgelvlad dgiknssfns sletkiiihg fralgtkpsw ieglvrailh ishvnviavd
      121 wvygstgayp savenvtqla lsisqfiskl lalgvsgtsi hiigvslgah vgglvgqfhg
      181 gqlgritgld pagpkytras peerldpgda lfveaihtds dnfgiripvg hidyfvnggk
      241 dqpgcprfis aglleqagvs vrklpkevkv ylmtspsapf cvhhslvefh lqkkrniits
      301 ieitlsgnnt ketakiiipk hketgkrlla hrvplcqins vtlkyvpknq fwrkdessiv
      361 gefcaaslpl ntnrtmsclp wnltlpsntd isyvlpaaca
//
LOCUS       XP_053937881             374 aa            linear   VRT 09-MAR-2023
DEFINITION  phospholipase A1 member A isoform X3 [Cuculus canorus].
ACCESSION   XP_053937881
VERSION     XP_053937881.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081906.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..374
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..374
                     /product="phospholipase A1 member A isoform X3"
                     /calculated_mol_wt=40359
     Region          35..336
                     /region_name="Lipase"
                     /note="pfam00151"
                     /db_xref="CDD:395099"
     CDS             1..374
                     /gene="PLA1A"
                     /coded_by="XM_054081906.1:118..1242"
                     /db_xref="GeneID:104055860"
ORIGIN      
        1 mvedlkrklf ivpavlllls saqagntdrv lgrnctdfqt anflrgsklk vqfllftsss
       61 pscgelvlad dgiknssfns sletkiiihg fralgtkpsw ieglvrailh ishvnviavd
      121 wvygstgayp savenvtqla lsisqfiskl lalgvsgtsi hiigvslgah vgglvgqfhg
      181 gqlgritgld pagpkytras peerldpgda lfveaihtds dnfgiripvg hidyfvnggk
      241 dqpgcprfis agykylicdh mravhlyvsa lkhscplvaf pcashqdfln grcldcvdpf
      301 lsscprigll eqagvsvrkl pkevkvylmt spsapfcvhh slvefhlqkk rniitsieit
      361 lsgnntketa kiim
//
LOCUS       XP_009555290             369 aa            linear   VRT 09-MAR-2023
DEFINITION  popeye domain-containing protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_009555290
VERSION     XP_009555290.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556995.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..369
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..369
                     /product="popeye domain-containing protein 2 isoform X1"
                     /calculated_mol_wt=41582
     Region          43..269
                     /region_name="Popeye"
                     /note="Popeye protein conserved region; pfam04831"
                     /db_xref="CDD:461448"
     CDS             1..369
                     /gene="POPDC2"
                     /coded_by="XM_009556995.2:410..1519"
                     /db_xref="GeneID:104055814"
ORIGIN      
        1 mtiqsergta geggqlgrms asslswdqav lqppvcdawk eitegaayql ascivflgym
       61 ggsgvfgsly ifgllapgyf cyalwgwlsa cgldifvwnt llalacllql ahlayrlrrn
      121 tipeeldlly ktmylplqvp levykeivkc ceeqvqllvr dqnyavegkt pidrlsllls
      181 grirvsqdgq flhyvfpyqf ldspeweslr pseegtfqvt ltaetdcsfi twprkklyfl
      241 lkkdryiarl fsshlgydis eklyslnekl fakfglrfdi rlpslyhvlr passeeeped
      301 ceeqlpdscq adacepppqp pppppaprpr asrpdsdllg edstslvled faelpgsfmd
      361 yvsegeymk
//
LOCUS       XP_009555291             367 aa            linear   VRT 09-MAR-2023
DEFINITION  popeye domain-containing protein 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_009555291
VERSION     XP_009555291.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556996.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..367
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..367
                     /product="popeye domain-containing protein 2 isoform X2"
                     /calculated_mol_wt=41236
     Region          43..269
                     /region_name="Popeye"
                     /note="Popeye protein conserved region; pfam04831"
                     /db_xref="CDD:461448"
     CDS             1..367
                     /gene="POPDC2"
                     /coded_by="XM_009556996.2:410..1513"
                     /db_xref="GeneID:104055814"
ORIGIN      
        1 mtiqsergta geggqlgrms asslswdqav lqppvcdawk eitegaayql ascivflgym
       61 ggsgvfgsly ifgllapgyf cyalwgwlsa cgldifvwnt llalacllql ahlayrlrrn
      121 tipeeldlly ktmylplqvp levykeivkc ceeqvqllvr dqnyavegkt pidrlsllls
      181 grirvsqdgq flhyvfpyqf ldspeweslr pseegtfqvt ltaetdcsfi twprkklyfl
      241 lkkdryiarl fsshlgydis eklyslnekl fakfglrfdi rlpslyhvlr passeeeped
      301 ceeqlpdscq adacepppqp pppppaprpr asrpdsdlla sgnllrssph llckerapla
      361 ptqtpel
//
LOCUS       XP_053937913             314 aa            linear   VRT 09-MAR-2023
DEFINITION  lymphocyte function-associated antigen 3 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053937913
VERSION     XP_053937913.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081938.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..314
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..314
                     /product="lymphocyte function-associated antigen 3 isoform
                     X1"
                     /calculated_mol_wt=36154
     Region          29..122
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          38..42
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          50..54
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          86..90
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          100..105
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          114..117
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..314
                     /gene="CD58"
                     /coded_by="XM_054081938.1:16..960"
                     /db_xref="GeneID:104055859"
ORIGIN      
        1 mqadpycpge athtsvklql yaahihcdev fgivgenftf pvksgqnite ilwtknknkv
       61 aewegqnett yytslidrgl lnkkngylti ynlensdagt yeltyldfvk enyaftfmls
      121 vlpppsepei tcnisgddfv lnciadfpkp ldyswkldst lvthhtteiv ipnknvdvsk
      181 kavclikfsq tersseisls kcfpdekgds yqkrnrdalw gasvffllpv gitiflyikg
      241 ilfvlvqlev nlkreellrr vqcitqentr hfilwrtkss fiwtelhlhk llimrmkslk
      301 qilnhnqitt lwik
//
LOCUS       XP_053937919             311 aa            linear   VRT 09-MAR-2023
DEFINITION  lymphocyte function-associated antigen 3 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053937919
VERSION     XP_053937919.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081944.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..311
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..311
                     /product="lymphocyte function-associated antigen 3 isoform
                     X2"
                     /calculated_mol_wt=34946
     Region          29..122
                     /region_name="IgV_CD2_like_N"
                     /note="N-terminal immunoglobulin (Ig)-like domain of
                     T-cell surface antigen CD2, and similar domains; cd05775"
                     /db_xref="CDD:409431"
     Region          29..42
                     /region_name="FR1"
                     /note="FR1 [structural motif]"
                     /db_xref="CDD:409431"
     Region          31..33
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409431"
     Region          36..43
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409431"
     Region          43..49
                     /region_name="CDR1"
                     /note="CDR1 [structural motif]"
                     /db_xref="CDD:409431"
     Region          50..55
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409431"
     Region          50..54
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409431"
     Region          56..71
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409431"
     Region          59..64
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409431"
     Region          68..71
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409431"
     Region          78..105
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409431"
     Region          78..83
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409431"
     Region          86..90
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409431"
     Region          100..105
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409431"
     Region          106..113
                     /region_name="CDR3"
                     /note="CDR3 [structural motif]"
                     /db_xref="CDD:409431"
     Region          114..121
                     /region_name="FR4"
                     /note="FR4 [structural motif]"
                     /db_xref="CDD:409431"
     Region          114..120
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409431"
     CDS             1..311
                     /gene="CD58"
                     /coded_by="XM_054081944.1:16..951"
                     /db_xref="GeneID:104055859"
ORIGIN      
        1 mqadpycpge athtsvklql yaahihcdev fgivgenftf pvksgqnite ilwtknknkv
       61 aewegqnett yytslidrgl lnkkngylti ynlensdagt yeltyldfvk enyaftfmls
      121 vlpppsepei tcnisgddfv lnciadfpkp ldyswkldst lvthhtteiv ipnknvdvsk
      181 kavclikfsq tersseisls kcfpdekgds yqkrnrdalw gasvffllpv gitiflyika
      241 rsklekgras qkspvhhsge htplysvenq eqfhldrtas sqavdhenee peaevtqdae
      301 ggngehpeeh s
//
LOCUS       XP_053937929             303 aa            linear   VRT 09-MAR-2023
DEFINITION  lymphocyte function-associated antigen 3 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053937929
VERSION     XP_053937929.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081954.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..303
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..303
                     /product="lymphocyte function-associated antigen 3 isoform
                     X3"
                     /calculated_mol_wt=35101
     Region          18..111
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          27..31
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          39..43
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          75..79
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          89..94
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          103..106
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..303
                     /gene="CD58"
                     /coded_by="XM_054081954.1:87..998"
                     /db_xref="GeneID:104055859"
ORIGIN      
        1 mwrllcllpl lahihcdevf givgenftfp vksgqnitei lwtknknkva ewegqnetty
       61 ytslidrgll nkkngyltiy nlensdagty eltyldfvke nyaftfmlsv lpppsepeit
      121 cnisgddfvl nciadfpkpl dyswkldstl vthhtteivi pnknvdvskk avclikfsqt
      181 ersseislsk cfpdekgdsy qkrnrdalwg asvffllpvg itiflyikgi lfvlvqlevn
      241 lkreellrrv qcitqentrh filwrtkssf iwtelhlhkl limrmkslkq ilnhnqittl
      301 wik
//
LOCUS       XP_053937941             297 aa            linear   VRT 09-MAR-2023
DEFINITION  lymphocyte function-associated antigen 3 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053937941
VERSION     XP_053937941.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081966.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..297
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..297
                     /product="lymphocyte function-associated antigen 3 isoform
                     X4"
                     /calculated_mol_wt=33486
     Region          29..122
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          38..42
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          50..54
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          86..90
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          100..105
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          114..117
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..297
                     /gene="CD58"
                     /coded_by="XM_054081966.1:16..909"
                     /db_xref="GeneID:104055859"
ORIGIN      
        1 mqadpycpge athtsvklql yaahihcdev fgivgenftf pvksgqnite ilwtknknkv
       61 aewegqnett yytslidrgl lnkkngylti ynlensdagt yeltyldfvk enyaftfmls
      121 vlpppsepei tcnisgddfv lnciadfpkp ldyswkldst lvthhtteiv ipnknvdvsk
      181 kavclikfsq tersseisls kcfpdekgds yqkrnrdalw gasvffllpv gitiflyika
      241 rsklekgras qkspvhhsge htplysvenq eqfhldrtas sqavdhenee peadlks
//
LOCUS       XP_053937950             282 aa            linear   VRT 09-MAR-2023
DEFINITION  lymphocyte function-associated antigen 3 isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053937950
VERSION     XP_053937950.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081975.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..282
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..282
                     /product="lymphocyte function-associated antigen 3 isoform
                     X5"
                     /calculated_mol_wt=32482
     Region          29..122
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          38..42
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          50..54
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          86..90
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          100..105
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          114..117
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..282
                     /gene="CD58"
                     /coded_by="XM_054081975.1:16..864"
                     /db_xref="GeneID:104055859"
ORIGIN      
        1 mqadpycpge athtsvklql yaahihcdev fgivgenftf pvksgqnite ilwtknknkv
       61 aewegqnett yytslidrgl lnkkngylti ynlensdagt yeltyldfvk enyaftfmls
      121 vlpppsepei tcnisgddfv lnciadfpkp ldyswkldst lvthhtteiv ipnknvdvsk
      181 kavclikfsq tersseisls kcfpdekgil fvlvqlevnl kreellrrvq citqentrhf
      241 ilwrtkssfi wtelhlhkll imrmkslkqi lnhnqittlw ik
//
LOCUS       XP_053937953             279 aa            linear   VRT 09-MAR-2023
DEFINITION  lymphocyte function-associated antigen 3 isoform X6 [Cuculus
            canorus].
ACCESSION   XP_053937953
VERSION     XP_053937953.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081978.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..279
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..279
                     /product="lymphocyte function-associated antigen 3 isoform
                     X6"
                     /calculated_mol_wt=31275
     Region          29..122
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          38..42
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          50..54
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          86..90
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          100..105
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          114..117
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..279
                     /gene="CD58"
                     /coded_by="XM_054081978.1:16..855"
                     /db_xref="GeneID:104055859"
ORIGIN      
        1 mqadpycpge athtsvklql yaahihcdev fgivgenftf pvksgqnite ilwtknknkv
       61 aewegqnett yytslidrgl lnkkngylti ynlensdagt yeltyldfvk enyaftfmls
      121 vlpppsepei tcnisgddfv lnciadfpkp ldyswkldst lvthhtteiv ipnknvdvsk
      181 kavclikfsq tersseisls kcfpdekars klekgrasqk spvhhsgeht plysvenqeq
      241 fhldrtassq avdheneepe aevtqdaegg ngehpeehs
//
LOCUS       XP_053937973             858 aa            linear   VRT 09-MAR-2023
DEFINITION  TBC1 domain family member 30 isoform X1 [Cuculus canorus].
ACCESSION   XP_053937973
VERSION     XP_053937973.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054081998.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..858
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..858
                     /product="TBC1 domain family member 30 isoform X1"
                     /calculated_mol_wt=95807
     Region          166..385
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     Region          554..699
                     /region_name="DUF4682"
                     /note="Domain of unknown function (DUF4682); pfam15733"
                     /db_xref="CDD:464830"
     CDS             1..858
                     /gene="TBC1D30"
                     /coded_by="XM_054081998.1:84..2660"
                     /db_xref="GeneID:104061568"
ORIGIN      
        1 meggagrags sadslpeede ddegpgggng rrgrasslvs gllielysaa epgsarsral
       61 relrrrpspl rylrlkdvge lttikrelny risvqsakll rllkqkdrlv hkvqkncdiv
      121 taclqavsqk rrvdtklkft lepslgqngf qqwhdalkav arlptgipke wrrkvwltla
      181 dqylhsiaid wdktmrftfn ersnpdddsm giqivkdlhr tgcssycgqe aeqdrvvlkr
      241 vllayarwnk svgycqgfni laalilevme gnegdalkim iylidkvlpd syfvnnlral
      301 svdmavfrdl lrmklpelsq hldtlqraan resgggyepp ltnvftmqwf ltlfatclpn
      361 htvlkiwdsv ffegseiilr valaiwaklg eqieccetad efystmgklt qemlednlid
      421 snelmqtvyt maqfpfpqla elrekytyni tpfpaavkst sfsgrlgrtr dsdeendqdd
      481 ddsianaigc lgplsgflvp elqkyqkqmk dqneeqslgs sniaelspga idscrseyha
      541 afnsmmmerm ttdinalkkq ysrikkkqqq qvhhvyirag sedddpgifl gprdqlnndk
      601 gpvtsllpsq vnhspvinhl llgkkmklnn rslknavihi pshaagkmsp ipqedlktkl
      661 nspwrthirv hrkniarakg qlgygdtigl ideqsencki nspgakeets khsdfeereg
      721 gglddrttrk aeqqsseags vdsstdmsvv qlklealelt sdskndvest shqssqprls
      781 essrsssdsg nlakspqpgn tkphvfnpfp svkplrksat arnlglygpt ertptvhfpq
      841 msrsfnksas gnsgtrkr
//
LOCUS       XP_009561821             839 aa            linear   VRT 09-MAR-2023
DEFINITION  TBC1 domain family member 30 isoform X2 [Cuculus canorus].
ACCESSION   XP_009561821
VERSION     XP_009561821.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563526.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561821.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..839
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..839
                     /product="TBC1 domain family member 30 isoform X2"
                     /calculated_mol_wt=93766
     Region          166..385
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     Region          554..680
                     /region_name="DUF4682"
                     /note="Domain of unknown function (DUF4682); pfam15733"
                     /db_xref="CDD:464830"
     CDS             1..839
                     /gene="TBC1D30"
                     /coded_by="XM_009563526.2:61..2580"
                     /db_xref="GeneID:104061568"
ORIGIN      
        1 meggagrags sadslpeede ddegpgggng rrgrasslvs gllielysaa epgsarsral
       61 relrrrpspl rylrlkdvge lttikrelny risvqsakll rllkqkdrlv hkvqkncdiv
      121 taclqavsqk rrvdtklkft lepslgqngf qqwhdalkav arlptgipke wrrkvwltla
      181 dqylhsiaid wdktmrftfn ersnpdddsm giqivkdlhr tgcssycgqe aeqdrvvlkr
      241 vllayarwnk svgycqgfni laalilevme gnegdalkim iylidkvlpd syfvnnlral
      301 svdmavfrdl lrmklpelsq hldtlqraan resgggyepp ltnvftmqwf ltlfatclpn
      361 htvlkiwdsv ffegseiilr valaiwaklg eqieccetad efystmgklt qemlednlid
      421 snelmqtvyt maqfpfpqla elrekytyni tpfpaavkst sfsgrlgrtr dsdeendqdd
      481 ddsianaigc lgplsgflvp elqkyqkqmk dqneeqslgs sniaelspga idscrseyha
      541 afnsmmmerm ttdinalkkq ysrikkkqqq qvhhvyirad kgpvtsllps qvnhspvinh
      601 lllgkkmkln nrslknavih ipshaagkms pipqedlktk lnspwrthir vhrkniarak
      661 gqlgygdtig lideqsenck inspgakeet skhsdfeere ggglddrttr kaeqqsseag
      721 svdsstdmsv vqlklealel tsdskndves tshqssqprl sessrsssds gnlakspqpg
      781 ntkphvfnpf psvkplrksa tarnlglygp tertptvhfp qmsrsfnksa sgnsgtrkr
//
LOCUS       XP_053937992             780 aa            linear   VRT 09-MAR-2023
DEFINITION  TBC1 domain family member 30 isoform X3 [Cuculus canorus].
ACCESSION   XP_053937992
VERSION     XP_053937992.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082017.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..780
                     /product="TBC1 domain family member 30 isoform X3"
                     /calculated_mol_wt=87132
     Region          88..307
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     Region          476..621
                     /region_name="DUF4682"
                     /note="Domain of unknown function (DUF4682); pfam15733"
                     /db_xref="CDD:464830"
     CDS             1..780
                     /gene="TBC1D30"
                     /coded_by="XM_054082017.1:120..2462"
                     /db_xref="GeneID:104061568"
ORIGIN      
        1 mrqerlpgsl rrggrclkrq ssgggvgtil snvlkkrsci srtaprllct lepgvdtklk
       61 ftlepslgqn gfqqwhdalk avarlptgip kewrrkvwlt ladqylhsia idwdktmrft
      121 fnersnpddd smgiqivkdl hrtgcssycg qeaeqdrvvl krvllayarw nksvgycqgf
      181 nilaalilev megnegdalk imiylidkvl pdsyfvnnlr alsvdmavfr dllrmklpel
      241 sqhldtlqra anresgggye ppltnvftmq wfltlfatcl pnhtvlkiwd svffegseii
      301 lrvalaiwak lgeqieccet adefystmgk ltqemlednl idsnelmqtv ytmaqfpfpq
      361 laelrekyty nitpfpaavk stsfsgrlgr trdsdeendq ddddsianai gclgplsgfl
      421 vpelqkyqkq mkdqneeqsl gssniaelsp gaidscrsey haafnsmmme rmttdinalk
      481 kqysrikkkq qqqvhhvyir agsedddpgi flgprdqlnn dkgpvtsllp sqvnhspvin
      541 hlllgkkmkl nnrslknavi hipshaagkm spipqedlkt klnspwrthi rvhrkniara
      601 kgqlgygdti glideqsenc kinspgakee tskhsdfeer eggglddrtt rkaeqqssea
      661 gsvdsstdms vvqlkleale ltsdskndve stshqssqpr lsessrsssd sgnlakspqp
      721 gntkphvfnp fpsvkplrks atarnlglyg ptertptvhf pqmsrsfnks asgnsgtrkr
//
LOCUS       XP_053938000             761 aa            linear   VRT 09-MAR-2023
DEFINITION  TBC1 domain family member 30 isoform X4 [Cuculus canorus].
ACCESSION   XP_053938000
VERSION     XP_053938000.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082025.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..761
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..761
                     /product="TBC1 domain family member 30 isoform X4"
                     /calculated_mol_wt=85091
     Region          88..307
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     Region          476..602
                     /region_name="DUF4682"
                     /note="Domain of unknown function (DUF4682); pfam15733"
                     /db_xref="CDD:464830"
     CDS             1..761
                     /gene="TBC1D30"
                     /coded_by="XM_054082025.1:118..2403"
                     /db_xref="GeneID:104061568"
ORIGIN      
        1 mrqerlpgsl rrggrclkrq ssgggvgtil snvlkkrsci srtaprllct lepgvdtklk
       61 ftlepslgqn gfqqwhdalk avarlptgip kewrrkvwlt ladqylhsia idwdktmrft
      121 fnersnpddd smgiqivkdl hrtgcssycg qeaeqdrvvl krvllayarw nksvgycqgf
      181 nilaalilev megnegdalk imiylidkvl pdsyfvnnlr alsvdmavfr dllrmklpel
      241 sqhldtlqra anresgggye ppltnvftmq wfltlfatcl pnhtvlkiwd svffegseii
      301 lrvalaiwak lgeqieccet adefystmgk ltqemlednl idsnelmqtv ytmaqfpfpq
      361 laelrekyty nitpfpaavk stsfsgrlgr trdsdeendq ddddsianai gclgplsgfl
      421 vpelqkyqkq mkdqneeqsl gssniaelsp gaidscrsey haafnsmmme rmttdinalk
      481 kqysrikkkq qqqvhhvyir adkgpvtsll psqvnhspvi nhlllgkkmk lnnrslknav
      541 ihipshaagk mspipqedlk tklnspwrth irvhrkniar akgqlgygdt iglideqsen
      601 ckinspgake etskhsdfee reggglddrt trkaeqqsse agsvdsstdm svvqlkleal
      661 eltsdskndv estshqssqp rlsessrsss dsgnlakspq pgntkphvfn pfpsvkplrk
      721 satarnlgly gptertptvh fpqmsrsfnk sasgnsgtrk r
//
LOCUS       XP_053938007             739 aa            linear   VRT 09-MAR-2023
DEFINITION  TBC1 domain family member 30 isoform X5 [Cuculus canorus].
ACCESSION   XP_053938007
VERSION     XP_053938007.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082032.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..739
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..739
                     /product="TBC1 domain family member 30 isoform X5"
                     /calculated_mol_wt=82745
     Region          47..266
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     Region          435..580
                     /region_name="DUF4682"
                     /note="Domain of unknown function (DUF4682); pfam15733"
                     /db_xref="CDD:464830"
     CDS             1..739
                     /gene="TBC1D30"
                     /coded_by="XM_054082032.1:38..2257"
                     /db_xref="GeneID:104061568"
ORIGIN      
        1 mllqggirfi ypgvdtklkf tlepslgqng fqqwhdalka varlptgipk ewrrkvwltl
       61 adqylhsiai dwdktmrftf nersnpddds mgiqivkdlh rtgcssycgq eaeqdrvvlk
      121 rvllayarwn ksvgycqgfn ilaalilevm egnegdalki miylidkvlp dsyfvnnlra
      181 lsvdmavfrd llrmklpels qhldtlqraa nresgggyep pltnvftmqw fltlfatclp
      241 nhtvlkiwds vffegseiil rvalaiwakl geqiecceta defystmgkl tqemlednli
      301 dsnelmqtvy tmaqfpfpql aelrekytyn itpfpaavks tsfsgrlgrt rdsdeendqd
      361 dddsianaig clgplsgflv pelqkyqkqm kdqneeqslg ssniaelspg aidscrseyh
      421 aafnsmmmer mttdinalkk qysrikkkqq qqvhhvyira gsedddpgif lgprdqlnnd
      481 kgpvtsllps qvnhspvinh lllgkkmkln nrslknavih ipshaagkms pipqedlktk
      541 lnspwrthir vhrkniarak gqlgygdtig lideqsenck inspgakeet skhsdfeere
      601 ggglddrttr kaeqqsseag svdsstdmsv vqlklealel tsdskndves tshqssqprl
      661 sessrsssds gnlakspqpg ntkphvfnpf psvkplrksa tarnlglygp tertptvhfp
      721 qmsrsfnksa sgnsgtrkr
//
LOCUS       XP_053938015             296 aa            linear   VRT 09-MAR-2023
DEFINITION  homeobox protein DBX2 [Cuculus canorus].
ACCESSION   XP_053938015
VERSION     XP_053938015.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082040.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..296
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..296
                     /product="homeobox protein DBX2"
                     /calculated_mol_wt=32140
     Region          <43..>128
                     /region_name="PHA02682"
                     /note="ORF080 virion core protein; Provisional"
                     /db_xref="CDD:177464"
     Region          150..204
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     CDS             1..296
                     /gene="DBX2"
                     /coded_by="XM_054082040.1:171..1061"
                     /db_xref="GeneID:104062408"
ORIGIN      
        1 mlpgalrwdl agssalldlp aapgfgnlgk sflienllra gappgpaqlr plpaspvplk
       61 lcpapgqggp caarcacqap gpcaparggl ppaatalskh fflrappfys accggscqhp
      121 asptafpree svlplltqes nskarrgilr ravfsedqrk alekmfqkqk yisktdrkkl
      181 avnlglkesq vkiwfqnrrm kwrnskekev lsnrclqees lqenylsrst vnftspcpsm
      241 wevsqeqasp rwrenspgns erltsaqppp ranssqssly lypdqdtvnk avtssa
//
LOCUS       XP_053938026             971 aa            linear   VRT 09-MAR-2023
DEFINITION  calsyntenin-3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053938026
VERSION     XP_053938026.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082051.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..971
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..971
                     /product="calsyntenin-3 isoform X1"
                     /calculated_mol_wt=107470
     Region          39..147
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(46..47,105,107,144,146..147)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          157..246
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          554..918
                     /region_name="CLSTN_C"
                     /note="Calsyntenin C-terminal; pfam19699"
                     /db_xref="CDD:466150"
     CDS             1..971
                     /gene="CLSTN3"
                     /coded_by="XM_054082051.1:136..3051"
                     /db_xref="GeneID:104064357"
ORIGIN      
        1 mgdprpraaa llpllclyaa lpaaaankan khkpwieaey qgivmendnt vllnpplfal
       61 dkdaplryag eicgfrihga gvpfeavild katgeglira kepvdceahk ehtftiqayd
      121 cgegpdgant kkshkatvhv rvndvnefap vfveklyrva vtegklydri lrveaidgdc
      181 spqysqicyy eiltpnipfl idndgnient eklqysgdrl ykftvtaydc gkkrasddae
      241 veiqvkptck pswqgwnkri eytpgagsla lfpsihletc deplwniqat velqtnhvak
      301 gcdrdnysek slrklcgaas geidllpvps ptanwtaqls vhysqdssli ywfngsqaaq
      361 vpvvnglnah eglsdhftls vwmkhavvps kgrreeetvi cstvqseegy shyslsvhgc
      421 riaflywpll esarpvkflw kleqvcddew hhyalnlefp tvtlyvdgvs ydpalihdng
      481 lihpprqeps lmigacwtee kikgnesssd tvqgdplsih hyfhgylagf svrpgslesr
      541 evieclyacr egldysdfds lgkgmkvhvn psqslltleg ddvetfnhai qhvaymnslr
      601 fatpgvrplr ltttvkcfse escvsipdve gyvvvlqpda pqilltgnah fahpasdfea
      661 sdgvplfpnl qitcsishqv eakkdenwhg tvtdtrmsde ivhnldgcei slvgddldpe
      721 reyllldgal lqqrglelvn tsayltitgv esiavyeeil rqasyhinrg aalyerkfhl
      781 sctemngrys sneftvevnv lhnmnraahp nhilssqqfi hrghhlppel sghslasthn
      841 npmvpsaatv iivvcvgfla lmvilgilri hslhrrgvgq evpgtaqggh vstggkesdm
      901 fwddsaltii vnpmesyqsc qeraaesgeg rgsegmeded dstdsetpds ldsndvddrh
      961 iigrsnvphr y
//
LOCUS       XP_053938035             956 aa            linear   VRT 09-MAR-2023
DEFINITION  calsyntenin-3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053938035
VERSION     XP_053938035.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082060.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..956
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..956
                     /product="calsyntenin-3 isoform X2"
                     /calculated_mol_wt=105837
     Region          39..147
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(46..47,105,107,144,146..147)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          157..246
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          353..527
                     /region_name="Laminin_G_3"
                     /note="Concanavalin A-like lectin/glucanases superfamily;
                     pfam13385"
                     /db_xref="CDD:463865"
     Region          539..903
                     /region_name="CLSTN_C"
                     /note="Calsyntenin C-terminal; pfam19699"
                     /db_xref="CDD:466150"
     CDS             1..956
                     /gene="CLSTN3"
                     /coded_by="XM_054082060.1:136..3006"
                     /db_xref="GeneID:104064357"
ORIGIN      
        1 mgdprpraaa llpllclyaa lpaaaankan khkpwieaey qgivmendnt vllnpplfal
       61 dkdaplryag eicgfrihga gvpfeavild katgeglira kepvdceahk ehtftiqayd
      121 cgegpdgant kkshkatvhv rvndvnefap vfveklyrva vtegklydri lrveaidgdc
      181 spqysqicyy eiltpnipfl idndgnient eklqysgdrl ykftvtaydc gkkrasddae
      241 veiqvkptck pswqgwnkri eytpgagsla lfpsihletc deplwniqat velqtnhvak
      301 gcdrdnysek slrklcgaas geidllpvps ptanwtaqls vhysqdssli ywfngsqaaq
      361 vpvvnglnah eglsdhftls vwmkhavvps kgrreeetvi cstvqseegy shyslsvhgc
      421 riaflywpll esarpvkflw kleqvcddew hhyalnlefp tvtlyvdgvs ydpalihdng
      481 lihpprqeps lmigacwtgd plsihhyfhg ylagfsvrpg slesreviec lyacregldy
      541 sdfdslgkgm kvhvnpsqsl ltlegddvet fnhaiqhvay mnslrfatpg vrplrltttv
      601 kcfseescvs ipdvegyvvv lqpdapqill tgnahfahpa sdfeasdgvp lfpnlqitcs
      661 ishqveakkd enwhgtvtdt rmsdeivhnl dgceislvgd dldpereyll ldgallqqrg
      721 lelvntsayl titgvesiav yeeilrqasy hinrgaalye rkfhlsctem ngryssneft
      781 vevnvlhnmn raahpnhils sqqfihrghh lppelsghsl asthnnpmvp saatviivvc
      841 vgflalmvil gilrihslhr rgvgqevpgt aqgghvstgg kesdmfwdds altiivnpme
      901 syqscqeraa esgegrgseg mededdstds etpdsldsnd vddrhiigrs nvphry
//
LOCUS       XP_009564977             315 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier family 25 member 36 [Cuculus canorus].
ACCESSION   XP_009564977
VERSION     XP_009564977.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566682.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..315
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..315
                     /product="solute carrier family 25 member 36"
                     /calculated_mol_wt=34153
     Region          <22..113
                     /region_name="Mito_carr"
                     /note="Mitochondrial carrier protein; pfam00153"
                     /db_xref="CDD:395101"
     Region          125..210
                     /region_name="Mito_carr"
                     /note="Mitochondrial carrier protein; pfam00153"
                     /db_xref="CDD:395101"
     Region          228..310
                     /region_name="Mito_carr"
                     /note="Mitochondrial carrier protein; pfam00153"
                     /db_xref="CDD:395101"
     CDS             1..315
                     /gene="LOC104064354"
                     /coded_by="XM_009566682.2:235..1182"
                     /db_xref="GeneID:104064354"
ORIGIN      
        1 maqqgtllhl laggcggtag ailtcplevv ktrlqssqlt lrplclseiq mpgmsvklmn
       61 stppspgvlr llrdilekeg mrslfrglgp nlvgvapsra iyfatysgvk erlnavllpe
      121 skkvhmlsaa cagvtcatlt npiwlvktrm qlearvkgem annalqcalc vyrteglrgf
      181 yrgvtasyag vsetiihfvi yealkkqlrn ghhslssplt lspnsydffg lmgaaavskt
      241 casciayphe virtrlreeg sryrsfvqtl qlvvheegpl alyrgllahl irqipnaaim
      301 matyelivhl asstl
//
LOCUS       XP_053938059             703 aa            linear   VRT 09-MAR-2023
DEFINITION  cytoskeleton-associated protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053938059
VERSION     XP_053938059.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082084.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..703
                     /product="cytoskeleton-associated protein 2 isoform X1"
                     /calculated_mol_wt=78226
     Region          338..694
                     /region_name="CKAP2_C"
                     /note="Cytoskeleton-associated protein 2 C-terminus;
                     pfam15297"
                     /db_xref="CDD:464623"
     CDS             1..703
                     /gene="CKAP2"
                     /coded_by="XM_054082084.1:138..2249"
                     /db_xref="GeneID:104066172"
ORIGIN      
        1 maardppqlp asrrtepafr eqrrqkveey lsrkktfsgv piqenqepis ssrtrratsn
       61 klqdtiqlst spkpgmenke nadklswdqs sgtseknvtl nsstitltns lsgtnynped
      121 hvskdrvtei ksrhlslsks flqiksrkek eliaekqnln vilpkkpvlg tyrgkviqsk
      181 insfrkapvs ereksslpnk kllpsatkpa arslstsnss vvlktnkvtn yqssvkpsgv
      241 lpsqskpsgk vainpqsslk klqptsavap rkvtvqktit ergpqplkvt snhsdrralg
      301 vkkcadfced grpgtpaksi svfsstkpgq dsetncnrks ilpkksseer rarldewras
      361 rgkamrrppm savlghqsks enqelssgds sehvlhsekv nktlaeclql teqgcqgnev
      421 camledltqs ipgakklany wiccmrlaqm gplekliavy eeailagamp kdelrhtlid
      481 mlknteslfk pedvlggtvt eahlsegvev skepnspveq vreafkdlsf dqkpkgddke
      541 aetsnelikk eevdldlklg eeifpkknkk dktkerikkk gkreteeqne dgvkdtaqav
      601 nspekendtf ylmrcnpstt sylesvkmhh eangstakdl kivtplrysq rirekmckql
      661 dtvkdqdpcv ssfeqlgele pkattfidkl sqalketsae iee
//
LOCUS       XP_053938063             702 aa            linear   VRT 09-MAR-2023
DEFINITION  cytoskeleton-associated protein 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053938063
VERSION     XP_053938063.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082088.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..702
                     /product="cytoskeleton-associated protein 2 isoform X2"
                     /calculated_mol_wt=78139
     Region          337..693
                     /region_name="CKAP2_C"
                     /note="Cytoskeleton-associated protein 2 C-terminus;
                     pfam15297"
                     /db_xref="CDD:464623"
     CDS             1..702
                     /gene="CKAP2"
                     /coded_by="XM_054082088.1:137..2245"
                     /db_xref="GeneID:104066172"
ORIGIN      
        1 maardppqlp asrrtepafr eqrrqkveey lsrkktfsgv piqenqepis srtrratsnk
       61 lqdtiqlsts pkpgmenken adklswdqss gtseknvtln sstitltnsl sgtnynpedh
      121 vskdrvteik srhlslsksf lqiksrkeke liaekqnlnv ilpkkpvlgt yrgkviqski
      181 nsfrkapvse reksslpnkk llpsatkpaa rslstsnssv vlktnkvtny qssvkpsgvl
      241 psqskpsgkv ainpqsslkk lqptsavapr kvtvqktite rgpqplkvts nhsdrralgv
      301 kkcadfcedg rpgtpaksis vfsstkpgqd setncnrksi lpkksseerr arldewrasr
      361 gkamrrppms avlghqskse nqelssgdss ehvlhsekvn ktlaeclqlt eqgcqgnevc
      421 amledltqsi pgakklanyw iccmrlaqmg plekliavye eailagampk delrhtlidm
      481 lknteslfkp edvlggtvte ahlsegvevs kepnspveqv reafkdlsfd qkpkgddkea
      541 etsnelikke evdldlklge eifpkknkkd ktkerikkkg kreteeqned gvkdtaqavn
      601 spekendtfy lmrcnpstts ylesvkmhhe angstakdlk ivtplrysqr irekmckqld
      661 tvkdqdpcvs sfeqlgelep kattfidkls qalketsaei ee
//
LOCUS       XP_053938072             628 aa            linear   VRT 09-MAR-2023
DEFINITION  cytoskeleton-associated protein 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053938072
VERSION     XP_053938072.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082097.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..628
                     /product="cytoskeleton-associated protein 2 isoform X3"
                     /calculated_mol_wt=69677
     Region          263..619
                     /region_name="CKAP2_C"
                     /note="Cytoskeleton-associated protein 2 C-terminus;
                     pfam15297"
                     /db_xref="CDD:464623"
     CDS             1..628
                     /gene="CKAP2"
                     /coded_by="XM_054082097.1:303..2189"
                     /db_xref="GeneID:104066172"
ORIGIN      
        1 menkenadkl swdqssgtse knvtlnssti tltnslsgtn ynpedhvskd rvteiksrhl
       61 slsksflqik srkekeliae kqnlnvilpk kpvlgtyrgk viqskinsfr kapvsereks
      121 slpnkkllps atkpaarsls tsnssvvlkt nkvtnyqssv kpsgvlpsqs kpsgkvainp
      181 qsslkklqpt savaprkvtv qktitergpq plkvtsnhsd rralgvkkca dfcedgrpgt
      241 paksisvfss tkpgqdsetn cnrksilpkk sseerrarld ewrasrgkam rrppmsavlg
      301 hqsksenqel ssgdssehvl hsekvnktla eclqlteqgc qgnevcamle dltqsipgak
      361 klanywiccm rlaqmgplek liavyeeail agampkdelr htlidmlknt eslfkpedvl
      421 ggtvteahls egvevskepn spveqvreaf kdlsfdqkpk gddkeaetsn elikkeevdl
      481 dlklgeeifp kknkkdktke rikkkgkret eeqnedgvkd taqavnspek endtfylmrc
      541 npsttsyles vkmhheangs takdlkivtp lrysqrirek mckqldtvkd qdpcvssfeq
      601 lgelepkatt fidklsqalk etsaeiee
//
LOCUS       XP_053938085             386 aa            linear   VRT 09-MAR-2023
DEFINITION  vacuolar protein-sorting-associated protein 36 [Cuculus canorus].
ACCESSION   XP_053938085
VERSION     XP_053938085.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082110.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..386
                     /product="vacuolar protein-sorting-associated protein 36"
                     /calculated_mol_wt=43504
     Region          1..128
                     /region_name="PH-GRAM-like_Eap45"
                     /note="Pleckstrin homology-like domain or GLUE (GRAM-like
                     ubiquitin-binding in Eap45) domain of Eap45; cd13226"
                     /db_xref="CDD:275408"
     Site            order(32,81,111)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:275408"
     Site            order(67..68,70,85..87,99,105)
                     /site_type="other"
                     /note="ubiquitin binding site [polypeptide binding]"
                     /db_xref="CDD:275408"
     Region          154..370
                     /region_name="EAP30"
                     /note="EAP30/Vps36 family; pfam04157"
                     /db_xref="CDD:461201"
     CDS             1..386
                     /gene="VPS36"
                     /coded_by="XM_054082110.1:93..1253"
                     /db_xref="GeneID:104066171"
ORIGIN      
        1 mdrfswtsgl levgetlvvq qrgvrlhdge ekvkfdsgvl llsthrliwr dqknheccia
       61 vplsqivfie eqsagigksa kivvhlhpas snkepgplqs skysyiklsf kehgqiefyr
      121 rlseeitqrr wenmptgqti qvnkdpragr iravgivgie rkleekrket dkniseafed
      181 lsklmekake mvelsksian kikekqgdit edetirfksy llsmgianpv tretygsgth
      241 yhmqlakqla gmlqtpleer ggimslteay clvnrargle llspedlvna ckmleslklp
      301 lrlrifdsgv mvielqshne eemvasalet vsekgsltad efaklvgmsv llakerllla
      361 ekmghlcrdd sveglrfypn lfltqs
//
LOCUS       XP_053938096             144 aa            linear   VRT 09-MAR-2023
DEFINITION  mediator of RNA polymerase II transcription subunit 21 [Cuculus
            canorus].
ACCESSION   XP_053938096
VERSION     XP_053938096.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082121.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..144
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..144
                     /product="mediator of RNA polymerase II transcription
                     subunit 21"
                     /calculated_mol_wt=15491
     Region          3..127
                     /region_name="Med21"
                     /note="Subunit 21 of Mediator complex; pfam11221"
                     /db_xref="CDD:463241"
     CDS             1..144
                     /gene="MED21"
                     /coded_by="XM_054082121.1:24..458"
                     /db_xref="GeneID:104067405"
ORIGIN      
        1 madrltqlqd avnsladqfc naigvlqqcg ppasfsniqt ainkdqpanp teeyaqlfaa
       61 liartakdid vlidslpsee staalqaasl yrleeenhea aarleevvyr gdvllekiqs
      121 aladiaqsql ktrsgthsql lpdl
//
LOCUS       XP_053938125             331 aa            linear   VRT 09-MAR-2023
DEFINITION  tRNA wybutosine-synthesizing protein 4-like [Cuculus canorus].
ACCESSION   XP_053938125
VERSION     XP_053938125.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082150.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 19% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..331
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..331
                     /product="tRNA wybutosine-synthesizing protein 4-like"
                     /calculated_mol_wt=35171
     Region          <59..307
                     /region_name="NanM"
                     /note="N-acetylneuraminic acid mutarotase [Cell
                     wall/membrane/envelope biogenesis]; COG3055"
                     /db_xref="CDD:442289"
     Region          179..228
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..331
                     /gene="LOC128853884"
                     /coded_by="XM_054082150.1:1..996"
                     /db_xref="GeneID:128853884"
ORIGIN      
        1 matgepgnvp epcasprvpa shrgqsfapa rvavvaqpsp spsgpvgdsd lngctprfge
       61 rlyhtalcls ddvvllvggr tspsssgvat vwlkvsgtsa ewdaaevtve pvdlppvaep
      121 pshrwrhsat qvtfqgenfl flyggrsate pvlgdwcflr ipelsytvip vegavperrh
      181 shgacawegg avivgglgad ekplgslfll relqrgfgwq pmethpplvp ryshtahvhd
      241 gklllvggvw lrsssvpgvt vvdlttglcl dytidveple wplmlhnhss vllpdekell
      301 vlggggncfs fgthlnsepv lldlnsiltt p
//
LOCUS       XP_009564794             359 aa            linear   VRT 09-MAR-2023
DEFINITION  melatonin receptor type 1B [Cuculus canorus].
ACCESSION   XP_009564794
VERSION     XP_009564794.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566499.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564794.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..359
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..359
                     /product="melatonin receptor type 1B"
                     /calculated_mol_wt=40488
     Region          37..315
                     /region_name="7tmA_Mel1B"
                     /note="melatonin receptor subtype 1B, member of the class
                     A family of seven-transmembrane G protein-coupled
                     receptors; cd15400"
                     /db_xref="CDD:320522"
     Region          38..64
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320522"
     Region          71..96
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320522"
     Site            order(93,96..97,109..114,116..117,120,165,167..171,193,
                     196..198,200..202,204..205,260,263..264,266..267,270,
                     282..283,285..287,290,293..294)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320522"
     Region          109..139
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320522"
     Region          151..173
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320522"
     Region          193..222
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320522"
     Region          240..270
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320522"
     Region          283..308
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320522"
     CDS             1..359
                     /gene="MTNR1B"
                     /coded_by="XM_009566499.2:4..1083"
                     /db_xref="GeneID:104064196"
ORIGIN      
        1 mlengslrnc cdpggrgrfg saereaaaaa rpawvvtals svlifttvvd ilgnllviis
       61 vfknrklrns gnafvvslal adlvvalypy plvllaifhn gwtlgemhck vsgfvmglsv
      121 igsifnitai ainrycyich sfaydkvysc wntmlyvsli wiltiiatvp nfflgslkyd
      181 priysctfvq tassyytiav vvihfivpit ivsfcylriw vlvlqvrrrv ksetkprlkq
      241 sdfrnfltmf vvfvifafcw aplnfiglav aidpmemapk vpewlfiisy fmayfnscln
      301 aiiygllnqn frneykrilm slwmprlffq dtskggtdgq kskpspalnn ndqmktdtl
//
LOCUS       XP_053938148             318 aa            linear   VRT 09-MAR-2023
DEFINITION  erythroblast NAD(P)(+)--arginine ADP-ribosyltransferase-like
            [Cuculus canorus].
ACCESSION   XP_053938148
VERSION     XP_053938148.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082173.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 10% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="erythroblast NAD(P)(+)--arginine
                     ADP-ribosyltransferase-like"
                     /calculated_mol_wt=35412
     Region          52..265
                     /region_name="ART"
                     /note="NAD:arginine ADP-ribosyltransferase; pfam01129"
                     /db_xref="CDD:279473"
     CDS             1..318
                     /gene="LOC128853886"
                     /coded_by="XM_054082173.1:374..1330"
                     /db_xref="GeneID:128853886"
ORIGIN      
        1 mlraspavvl ptmelllvgl vllaktfptt ttttttttss pldavpmvev pldlattsfd
       61 dryvgcagam deeledlnrt efstngvyaq awtlaaaewr srrgrvppvl rpehavalla
      121 ytkhgplfra fnaavredgr shrhyldnfr fkafhfllse alrvlrgtrs srchrvyrgv
      181 hgirftarrh qrvrfgqfts aslreesala fgrdtvfsve tcygvpikdf sfypeedevl
      241 ippfevfevt dvtsggggal ielrsrdads ayncewvker rcrdrpcdfg agwsvrgdps
      301 llwgllmvtt alvategp
//
LOCUS       XP_053938163             291 aa            linear   VRT 09-MAR-2023
DEFINITION  short stature homeobox protein [Cuculus canorus].
ACCESSION   XP_053938163
VERSION     XP_053938163.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082188.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..291
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..291
                     /product="short stature homeobox protein"
                     /calculated_mol_wt=32410
     Region          117..173
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     Region          271..287
                     /region_name="OAR"
                     /note="OAR motif; pfam03826"
                     /db_xref="CDD:461067"
     CDS             1..291
                     /gene="SHOX"
                     /coded_by="XM_054082188.1:230..1105"
                     /db_xref="GeneID:104063740"
ORIGIN      
        1 meeltafvsk sfdqkskess sgsgssnkke tityrevles glarsrelgn sdsnlqdmte
       61 ssnhcpvhlf kdhvesdkdk lkefstgrta egiyeckekr edvksededg qtklkqrrsr
      121 tnftleqlne lerlfdethy pdafmreels qrlglsearv qvwfqnrrak crkqenqmhk
      181 gvilgtashl dacrvapyvn mgalrmpfqq vqaqlqlegv ahahphlhph laahapylmf
      241 ppppfglpia slaesasaaa vvaaaaksns knssiadlrl karkhaealg l
//
LOCUS       XP_053938175             283 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein D1-like [Cuculus canorus].
ACCESSION   XP_053938175
VERSION     XP_053938175.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082200.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..283
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..283
                     /product="forkhead box protein D1-like"
                     /calculated_mol_wt=32742
     Region          57..151
                     /region_name="FH_FOXQ2-like"
                     /note="Forkhead (FH) domain found in Forkhead box protein
                     Q2 (FOXQ2) and similar proteins; cd20035"
                     /db_xref="CDD:410809"
     Site            order(62,80..81,84,103..104,106..107,110,117,125..127,129)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410809"
     CDS             1..283
                     /gene="LOC128853887"
                     /coded_by="XM_054082200.1:138..989"
                     /db_xref="GeneID:128853887"
ORIGIN      
        1 msevfsenne gslpnctvgg eeegklihri tpripssytr akkglsvteg earfldkppl
       61 syialiakai lssptnklnl aaiykyiedn fpfyrnkgrg wrnsvrhnls lndcfikvgr
      121 cedgkgnyws ihpsnlndfv hgdfrqhrrs rkrgrqkele hclavnyfmp wghspsypap
      181 nwlyqthcfl nplwkilyad rlqfvheyqk wnvnsdlimg kfspplqtdk phsisvdrfy
      241 gspatsvmqq niflniqqaf pnsfffssqk qqqseafrhi cky
//
LOCUS       XP_053938189             236 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-like protein family member 11A [Cuculus canorus].
ACCESSION   XP_053938189
VERSION     XP_053938189.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082214.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..236
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..236
                     /product="ras-like protein family member 11A"
                     /calculated_mol_wt=26287
     Region          29..197
                     /region_name="RERG_RasL11_like"
                     /note="Ras-related and Estrogen-Regulated Growth inhibitor
                     (RERG) and Ras-like 11 (RasL11)-like families; cd04146"
                     /db_xref="CDD:206713"
     Site            33..40
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206713"
     Site            order(34..35,82..83)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206713"
     Site            order(36..41,54,146..147,149,176..178)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206713"
     Site            order(40..41,55,57,63..64,77..78,80,82..83,178)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206713"
     Site            order(56..59,62..64)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206713"
     Site            order(56..57,61..64)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206713"
     Site            58
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206713"
     Site            80..83
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206713"
     Site            order(82..83,96..107)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206713"
     Site            146..149
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206713"
     Site            176..178
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206713"
     CDS             1..236
                     /gene="RASL11A"
                     /coded_by="XM_054082214.1:69..779"
                     /db_xref="GeneID:104064161"
ORIGIN      
        1 mrppgmsqpf llapiaefap eppgarlrla vlgargvgks amivrfltkr figdyepntg
       61 nlysrlvhle gdhiavqiqd tpgciqvqen cvqvldslsr cvkwaegfll vysitdyssy
      121 qsvqplyqhi rkvhpdartp iiivgnkadl lharqvqake glqlanelgs lfleistsdd
      181 fqgvsdvfqy lckevsklqr agamdrrrss iiprpkspnm qdlkrrfkqa lsskvk
//
LOCUS       XP_009560740             238 aa            linear   VRT 09-MAR-2023
DEFINITION  single-stranded DNA cytosine deaminase [Cuculus canorus].
ACCESSION   XP_009560740
VERSION     XP_009560740.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009562445.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009560740.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..238
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..238
                     /product="single-stranded DNA cytosine deaminase"
                     /calculated_mol_wt=28027
     Region          45..220
                     /region_name="NAD1"
                     /note="Novel AID APOBEC clade 1; pfam18778"
                     /db_xref="CDD:465865"
     CDS             1..238
                     /gene="AICDA"
                     /coded_by="XM_009562445.2:53..769"
                     /db_xref="GeneID:104060634"
ORIGIN      
        1 mgrghtgqpt flciksegcg drackttslq shhlretlav mdsllmkrkl flynfknlrw
       61 akgrretylc yvvkrrdsat scsldfgylr nkmgchvevl flryisawdl dpgrcyritw
      121 ftswspcydc arhvadflra ypnltlrift arlyfcedrk aepeglrrlh ragaqiaimt
      181 fkdyfycwnt fvenrektfe aweglhensv hlsrklrril lplyevddlr dafktlgl
//
LOCUS       XP_009565398             925 aa            linear   VRT 09-MAR-2023
DEFINITION  MORC family CW-type zinc finger protein 3 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009565398
VERSION     XP_009565398.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009567103.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009565398.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..925
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..925
                     /product="MORC family CW-type zinc finger protein 3
                     isoform X1"
                     /calculated_mol_wt=104997
     Region          18..135
                     /region_name="HATPase_MORC-like"
                     /note="Histidine kinase-like ATPase domain of human
                     microrchidia (MORC) family CW-type zinc finger proteins
                     MORC1-4, and related domains; cd16931"
                     /db_xref="CDD:340408"
     Site            order(35,39,42,65,67,69,71..72,101..104,117,119,128..129,
                     131)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:340408"
     Site            order(82,104)
                     /site_type="other"
                     /note="ATP-lid"
                     /db_xref="CDD:340408"
     Region          249..383
                     /region_name="Morc6_S5"
                     /note="Morc6 ribosomal protein S5 domain 2-like;
                     pfam17942"
                     /db_xref="CDD:465579"
     Region          410..452
                     /region_name="zf-CW"
                     /note="CW-type Zinc Finger; pfam07496"
                     /db_xref="CDD:462181"
     Region          <629..883
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     CDS             1..925
                     /gene="MORC3"
                     /coded_by="XM_009567103.2:80..2857"
                     /db_xref="GeneID:104064739"
ORIGIN      
        1 maaktlggih lsalcpkflh tnstshtwpf saiaelidna ydpdvsakqi widktvindn
       61 icltftdngn gmnseklhkm lsfgfseksv mngrvpvgly gngfksgsmr lgkdaivftk
      121 ngetmsvgll sqtfleatka ehvmvpivtf nnqrqisdpt esknslkail thslfsteek
      181 llaeldaiig kkgtriiiwn lrreknekte fdfdkdkydi ripedldetg krgykkqerl
      241 dqivpesdys lraycsilyl kptmqiilrg qkvktqlvsk slafiehdiy rpkflnaktv
      301 ritfgfncrn kdhygimmyh knrlikayer vgcqlkannm gvgvvgiiec nflkpthnkq
      361 dfdytneyrl tiaalgekln dywnemkrkk neeyplalpv eeiqkqpdqt wvqcdaclkw
      421 rklpdgiehl pekwycslnp dpqfrncsvp eepedddlih ptyektykkk dreklkkrpe
      481 ysyqinevfl kmpvssskdf ktfspvsgke avprsllpet snasvkrpll isnrsvssph
      541 sdcdnslkrr tpscvtpvsl kitrlndktf nnhddddedv iileesstpk psadsdvavv
      601 ktecidldqe ekqqencdvg epclaatsqs kieqltsatq tevlnlvvkk eeaedetdip
      661 vpnaemetkq hnvdvsetsv dlgnelknql qvlnkekemy qtkcevlakq vetleqrile
      721 mnnkyvkkev chqstetiss eeenvhgrsl aevtvlyeqa leeiaklkeq cntmqnlkte
      781 cskcaagdnk sevdeiavhl ddvfrqldkc sierdrykse ielleveknq iacqceelka
      841 eiaqlkasip qavaqatdst tsnveesvnf sdgeslklrs lrvnvgqlla timpdldlqq
      901 vnydidvvde ilgqvveqmh eisst
//
LOCUS       XP_053938244             854 aa            linear   VRT 09-MAR-2023
DEFINITION  MORC family CW-type zinc finger protein 3 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053938244
VERSION     XP_053938244.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082269.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..854
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..854
                     /product="MORC family CW-type zinc finger protein 3
                     isoform X2"
                     /calculated_mol_wt=97297
     Region          <1..64
                     /region_name="HATPase"
                     /note="Histidine kinase-like ATPase domain; cl00075"
                     /db_xref="CDD:469604"
     Site            order(7,33)
                     /site_type="other"
                     /note="ATP-lid"
                     /db_xref="CDD:340391"
     Region          178..312
                     /region_name="Morc6_S5"
                     /note="Morc6 ribosomal protein S5 domain 2-like;
                     pfam17942"
                     /db_xref="CDD:465579"
     Region          339..381
                     /region_name="zf-CW"
                     /note="CW-type Zinc Finger; pfam07496"
                     /db_xref="CDD:462181"
     Region          <558..812
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     CDS             1..854
                     /gene="MORC3"
                     /coded_by="XM_054082269.1:218..2782"
                     /db_xref="GeneID:104064739"
ORIGIN      
        1 mnseklhkml sfgfseksvm ngrvpvglyg ngfksgsmrl gkdaivftkn getmsvglls
       61 qtfleatkae hvmvpivtfn nqrqisdpte sknslkailt hslfsteekl laeldaiigk
      121 kgtriiiwnl rreknektef dfdkdkydir ipedldetgk rgykkqerld qivpesdysl
      181 raycsilylk ptmqiilrgq kvktqlvsks lafiehdiyr pkflnaktvr itfgfncrnk
      241 dhygimmyhk nrlikayerv gcqlkannmg vgvvgiiecn flkpthnkqd fdytneyrlt
      301 iaalgeklnd ywnemkrkkn eeyplalpve eiqkqpdqtw vqcdaclkwr klpdgiehlp
      361 ekwycslnpd pqfrncsvpe epedddlihp tyektykkkd reklkkrpey syqinevflk
      421 mpvssskdfk tfspvsgkea vprsllpets nasvkrplli snrsvssphs dcdnslkrrt
      481 pscvtpvslk itrlndktfn nhddddedvi ileesstpkp sadsdvavvk tecidldqee
      541 kqqencdvge pclaatsqsk ieqltsatqt evlnlvvkke eaedetdipv pnaemetkqh
      601 nvdvsetsvd lgnelknqlq vlnkekemyq tkcevlakqv etleqrilem nnkyvkkevc
      661 hqstetisse eenvhgrsla evtvlyeqal eeiaklkeqc ntmqnlktec skcaagdnks
      721 evdeiavhld dvfrqldkcs ierdryksei elleveknqi acqceelkae iaqlkasipq
      781 avaqatdstt snveesvnfs dgeslklrsl rvnvgqllat impdldlqqv nydidvvdei
      841 lgqvveqmhe isst
//
LOCUS       XP_009567531             177 aa            linear   VRT 09-MAR-2023
DEFINITION  parathyroid hormone-related protein [Cuculus canorus].
ACCESSION   XP_009567531
VERSION     XP_009567531.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009569236.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..177
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..177
                     /product="parathyroid hormone-related protein"
                     /calculated_mol_wt=20207
     Region          35..123
                     /region_name="Parathyroid"
                     /note="Parathyroid hormone family; pfam01279"
                     /db_xref="CDD:460145"
     CDS             1..177
                     /gene="PTHLH"
                     /coded_by="XM_009569236.2:84..617"
                     /db_xref="GeneID:104066612"
ORIGIN      
        1 mftklfqqws favfllsysv pssgrsvegi srrlkravse hqllhdkgks iqdlrrrifl
       61 qnliegvnta eiratsevsp npkpatntkn ypvrfgsede gryltqetnk sqtykeqplk
      121 vsgkkkkakp gkrkeqekkk rrarsawlns gmygssmtes plldnsvtth nhtlrrr
//
LOCUS       XP_053938259             177 aa            linear   VRT 09-MAR-2023
DEFINITION  parathyroid hormone-related protein [Cuculus canorus].
ACCESSION   XP_053938259
VERSION     XP_053938259.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082284.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..177
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..177
                     /product="parathyroid hormone-related protein"
                     /calculated_mol_wt=20207
     Region          35..123
                     /region_name="Parathyroid"
                     /note="Parathyroid hormone family; pfam01279"
                     /db_xref="CDD:460145"
     CDS             1..177
                     /gene="PTHLH"
                     /coded_by="XM_054082284.1:145..678"
                     /db_xref="GeneID:104066612"
ORIGIN      
        1 mftklfqqws favfllsysv pssgrsvegi srrlkravse hqllhdkgks iqdlrrrifl
       61 qnliegvnta eiratsevsp npkpatntkn ypvrfgsede gryltqetnk sqtykeqplk
      121 vsgkkkkakp gkrkeqekkk rrarsawlns gmygssmtes plldnsvtth nhtlrrr
//
LOCUS       XP_053938266             177 aa            linear   VRT 09-MAR-2023
DEFINITION  parathyroid hormone-related protein [Cuculus canorus].
ACCESSION   XP_053938266
VERSION     XP_053938266.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082291.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..177
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..177
                     /product="parathyroid hormone-related protein"
                     /calculated_mol_wt=20207
     Region          35..123
                     /region_name="Parathyroid"
                     /note="Parathyroid hormone family; pfam01279"
                     /db_xref="CDD:460145"
     CDS             1..177
                     /gene="PTHLH"
                     /coded_by="XM_054082291.1:137..670"
                     /db_xref="GeneID:104066612"
ORIGIN      
        1 mftklfqqws favfllsysv pssgrsvegi srrlkravse hqllhdkgks iqdlrrrifl
       61 qnliegvnta eiratsevsp npkpatntkn ypvrfgsede gryltqetnk sqtykeqplk
      121 vsgkkkkakp gkrkeqekkk rrarsawlns gmygssmtes plldnsvtth nhtlrrr
//
LOCUS       XP_053938274             177 aa            linear   VRT 09-MAR-2023
DEFINITION  parathyroid hormone-related protein [Cuculus canorus].
ACCESSION   XP_053938274
VERSION     XP_053938274.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082299.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..177
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..177
                     /product="parathyroid hormone-related protein"
                     /calculated_mol_wt=20207
     Region          35..123
                     /region_name="Parathyroid"
                     /note="Parathyroid hormone family; pfam01279"
                     /db_xref="CDD:460145"
     CDS             1..177
                     /gene="PTHLH"
                     /coded_by="XM_054082299.1:42..575"
                     /db_xref="GeneID:104066612"
ORIGIN      
        1 mftklfqqws favfllsysv pssgrsvegi srrlkravse hqllhdkgks iqdlrrrifl
       61 qnliegvnta eiratsevsp npkpatntkn ypvrfgsede gryltqetnk sqtykeqplk
      121 vsgkkkkakp gkrkeqekkk rrarsawlns gmygssmtes plldnsvtth nhtlrrr
//
LOCUS       XP_053938284            1435 aa            linear   VRT 09-MAR-2023
DEFINITION  arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing
            protein 1 [Cuculus canorus].
ACCESSION   XP_053938284
VERSION     XP_053938284.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082309.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1435
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1435
                     /product="arf-GAP with Rho-GAP domain, ANK repeat and PH
                     domain-containing protein 1"
                     /calculated_mol_wt=161767
     Region          110..164
                     /region_name="SAM_superfamily"
                     /note="SAM (Sterile alpha motif); cl15755"
                     /db_xref="CDD:472832"
     Region          <171..600
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          729..821
                     /region_name="PH-like"
                     /note="Pleckstrin homology-like domain; cl17171"
                     /db_xref="CDD:473070"
     Region          842..925
                     /region_name="PH-like"
                     /note="Pleckstrin homology-like domain; cl17171"
                     /db_xref="CDD:473070"
     Region          935..1050
                     /region_name="ArfGap"
                     /note="GTPase-activating protein (GAP) for the ADP
                     ribosylation factors (ARFs); cl28907"
                     /db_xref="CDD:355783"
     Site            order(950,953,970,973,978)
                     /site_type="other"
                     /note="arginine finger"
                     /db_xref="CDD:350058"
     Site            order(950,953,970,973)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:350058"
     Region          1143..>1212
                     /region_name="PH-like"
                     /note="Pleckstrin homology-like domain; cl17171"
                     /db_xref="CDD:473070"
     Region          <1226..1258
                     /region_name="Ubl1_cv_Nsp3_N-like"
                     /note="first ubiquitin-like (Ubl) domain located at the
                     N-terminus of coronavirus SARS-CoV non-structural protein
                     3 (Nsp3) and related proteins; cl28922"
                     /db_xref="CDD:475130"
     Region          1258..1385
                     /region_name="PH5_ARAP"
                     /note="ArfGAP with RhoGAP domain, ankyrin repeat and PH
                     domain Pleckstrin homology (PH) domain, repeat 5; cd13259"
                     /db_xref="CDD:270079"
     CDS             1..1435
                     /gene="ARAP1"
                     /coded_by="XM_054082309.1:222..4529"
                     /db_xref="GeneID:128853893"
ORIGIN      
        1 mwppptlsli pslvatrwll vahgfsqpsn wwstptpsfl lpprspspsv gvhpevhpwv
       61 eehlrevlqe vlrghrrplw gpdvlltfwr csersttttt meeeektmpv sswlaalhle
      121 qyvetfhhed lwtvgdcral sdevlthlgv llpghrrril gglqktfsea slettkgspr
      181 kplpfkshrf rptstedlae elpptvevdq egsiarippp ipprvgcrpp vrfsssptpf
      241 gsppapqnpl empprttkrs ppapqnplem pprvekplee ttkrsssapq nplemppwtt
      301 krsssapqnp lempprvekp leettkrspp apqnplempp wttkrsssap qnplempprv
      361 ekpleettkr stsapqnple mpprvekple ettkrsppap qnppempprv ekpleettkr
      421 spsapqnple mpprvekple ettkrsssap qnplempprt tkrspcapqn plempprvek
      481 pleettkrsp capqnplemp prvekpleet tkrsppapqn plempprvek pleettkrss
      541 sapqnplemp prvekpleet tkrspsapqn plemppwvek pleattkrpp lpakrrhlea
      601 kgpplpqgpp qvpprtmtlr ssspneevvv hhrrsppprw prgkapskvt agfgdsdeed
      661 itrrmelrgt iqevvekeea eppegpprse gltaekgqrr rgrggsrepr crrclrsrng
      721 egpplsptlr agwldknppq gsyiyqkrwv tldadclryf dtekdiyskr fisissisrv
      781 vtvgeqkfev lthhrnfvfr aesdaernew mgilqevvee krrskgpert svstttttdv
      841 sekkgflelr gfknkvlvvv egdkvllckn vedhrqgmgi tsiamkvgsv rqverrsfdl
      901 itpsrvfsfv adseqekeew meamkdsiae alsnsevaek iwrvegnrfc adcgspkpew
      961 asinlcvvic rrcagehrgl gptiskvrsl kmdrkvwtee lielfqqlgn aaanafwaan
     1021 vppseaivpt sgsrdrrrfl sakyrdgkyr ryhplfgnqe elnralcvav ttgdlaetqa
     1081 llfcgaavtc atgdpqcptp ltlaeksgqr lqmeflhhnr tsepprlevg ggeektfqvs
     1141 pssvthhgfl yktpsmakpi gerkgpeefs rrwcslgrgv lrysesdrsa apngeirtkd
     1201 ivclaknppr shgppgmppd pfpcpterpl hysekvlpiv hglgtgsylv vrkqlgmesm
     1261 lvylasrvgd ckhgmmkfre ernllglgls tgfhdryfil nnsclrlyke vrshkpekew
     1321 pvknlkvylg vkkklrpptc wgftvfyete khekqqwylc cdtqsdlrew fatflhvqhg
     1381 galwpsessk vrpsrwqqns rmgnvslipl rgnenemrss vgasatdpls llrnv
//
LOCUS       XP_009564298             596 aa            linear   VRT 09-MAR-2023
DEFINITION  arylsulfatase D [Cuculus canorus].
ACCESSION   XP_009564298
VERSION     XP_009564298.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566003.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564298.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..596
                     /product="arylsulfatase D"
                     /calculated_mol_wt=66776
     Region          40..564
                     /region_name="ES"
                     /note="Estrone sulfatase; cd16159"
                     /db_xref="CDD:293778"
     Site            order(49..50,89,148,150,179,304,356..357,382..383)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:293778"
     Site            order(89,148,150,179,304,382..383)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:293778"
     CDS             1..596
                     /gene="LOC104063747"
                     /coded_by="XM_009566003.2:180..1970"
                     /db_xref="GeneID:104063747"
ORIGIN      
        1 mylfhtwrsh kvhwaklwsc lniwlvlclf sktcvsnpsk pnflliladd lgigdvgcyg
       61 ndtirtpnid glakegvrlt qhiaaaavct psraafltgr ypirsgmass tqqrilfwng
      121 csgglppnet tfakillqqg ystalvgkwh mgvncksrld hchhplnhgf dyfygmpstl
      181 lnecqgtddp elakslqdty wlytqmiifs vltlmigkit nlfslkwkii iclaicglly
      241 fiawfssygf tkywncilmr nyniteqpmn lekttsnmlk eaasfikrnk hrpfllfvsl
      301 lhvhtplitt ekflgrsrhg lygdnveemd wvvgrvldvv dkeglknstf vyfasdhggs
      361 leahrgnvql ggwngiykgg kgmggweggi rvpgiirwpg vlpagkvide mtslmdifpt
      421 vvhlaggavp qdrvidgrtl lpllqgtvlh sghefmfhyc gvflhavrwh qkdsgtiwka
      481 hyatpvfqpe asgacfgrgi cpcfgdgvth hdppllfdls qdpseanpls tdteplfntv
      541 trrirkavee hrktltpvpe qlspysniwk pwlqpccgtf pfcwcdeenn kadgtl
//
LOCUS       XP_053938306             416 aa            linear   VRT 09-MAR-2023
DEFINITION  glycogenin-2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053938306
VERSION     XP_053938306.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082331.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..416
                     /product="glycogenin-2 isoform X1"
                     /calculated_mol_wt=46954
     Region          6..259
                     /region_name="GT8_Glycogenin"
                     /note="Glycogenin belongs the GT 8 family and initiates
                     the biosynthesis of glycogen; cd02537"
                     /db_xref="CDD:133018"
     Site            order(84..85,88,102,104..106,127,135..137,165..166,
                     193..194,214,216..217,220)
                     /site_type="active"
                     /note="substrate binding site [active]"
                     /db_xref="CDD:133018"
     Site            order(104,106,214)
                     /site_type="active"
                     /note="Manganese binding site [active]"
                     /db_xref="CDD:133018"
     Site            order(126..127,166,184,186..187,191,195)
                     /site_type="active"
                     /note="dimer interface [active]"
                     /db_xref="CDD:133018"
     CDS             1..416
                     /gene="GYG2"
                     /coded_by="XM_054082331.1:190..1440"
                     /db_xref="GeneID:104063728"
ORIGIN      
        1 msvtdqafvt latddvycqg alvlgqslrn httsrklavl itpevssgmr svlrsvfdev
       61 ievdvldsad svhlalmqrp elgvtftklh cwtlthyskc vfmdadtlvl cnvdelfdre
      121 efsaapdsgw pdcfnsgvfv frpslntynl llqfaaehgs fdggdqglln sffsnwatad
      181 igkhlpflyn lssnavytyv pafnhfgrda kvvhflgatk pwnykynlqt krvmqdgtas
      241 gsfhqlsfla lwwniysasi lplleklqkm eeseseeckh tfngveitlk kvspymansl
      301 qtpvppeqty eihptacspe eltfkaqpvc eaeqsssnvq lseperpseq lvfhppfqet
      361 seldeithsi lelsinfkpe etspeeerrk weegrmdymg kdafehikkk ldafll
//
LOCUS       XP_053938314             379 aa            linear   VRT 09-MAR-2023
DEFINITION  glycogenin-2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053938314
VERSION     XP_053938314.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082339.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..379
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..379
                     /product="glycogenin-2 isoform X2"
                     /calculated_mol_wt=42788
     Region          6..259
                     /region_name="GT8_Glycogenin"
                     /note="Glycogenin belongs the GT 8 family and initiates
                     the biosynthesis of glycogen; cd02537"
                     /db_xref="CDD:133018"
     Site            order(84..85,88,102,104..106,127,135..137,165..166,
                     193..194,214,216..217,220)
                     /site_type="active"
                     /note="substrate binding site [active]"
                     /db_xref="CDD:133018"
     Site            order(104,106,214)
                     /site_type="active"
                     /note="Manganese binding site [active]"
                     /db_xref="CDD:133018"
     Site            order(126..127,166,184,186..187,191,195)
                     /site_type="active"
                     /note="dimer interface [active]"
                     /db_xref="CDD:133018"
     CDS             1..379
                     /gene="GYG2"
                     /coded_by="XM_054082339.1:190..1329"
                     /db_xref="GeneID:104063728"
ORIGIN      
        1 msvtdqafvt latddvycqg alvlgqslrn httsrklavl itpevssgmr svlrsvfdev
       61 ievdvldsad svhlalmqrp elgvtftklh cwtlthyskc vfmdadtlvl cnvdelfdre
      121 efsaapdsgw pdcfnsgvfv frpslntynl llqfaaehgs fdggdqglln sffsnwatad
      181 igkhlpflyn lssnavytyv pafnhfgrda kvvhflgatk pwnykynlqt krvmqdgtas
      241 gsfhqlsfla lwwniysasi lplleklqkm eeseseeckh tfngveitlk kvspymansl
      301 qtpvppeqty eihptacspe eltfkadeit hsilelsinf kpeetspeee rrkweegrmd
      361 ymgkdafehi kkkldafll
//
LOCUS       XP_053938328             360 aa            linear   VRT 09-MAR-2023
DEFINITION  intestine-specific homeobox [Cuculus canorus].
ACCESSION   XP_053938328
VERSION     XP_053938328.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082353.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..360
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..360
                     /product="intestine-specific homeobox"
                     /calculated_mol_wt=40081
     Region          200..256
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     CDS             1..360
                     /gene="ISX"
                     /coded_by="XM_054082353.1:53..1135"
                     /db_xref="GeneID:128853895"
ORIGIN      
        1 mcslvghlfs ppgtpagqpg rggerrtasq lhvsrgtsra grtgedslpc ghfdrkmtdp
       61 qvcagqgkps lsfsieeilk kpsaitaqss etrnrsnyae rptalkagsl lafdssrsql
      121 dcdlhsskmf ppstcatpiv raknvqaanc rrptespasf lgedtgrehl erkrkhekee
      181 dqlcdfpvdh tlhverkgkr rirttftaeq lqelekifqv thypdvhirn qlaakinlpe
      241 arvqiwfqnq rakwrkhekf gnfgglhlte fdfipasksd itapslmpre ltatipavgy
      301 ytplqgqltt twlpstlsfv phhlellpfp kpflffnvlp tygtslshkl erssicasst
//
LOCUS       XP_053938351            1933 aa            linear   VRT 09-MAR-2023
DEFINITION  chromodomain-helicase-DNA-binding protein 4 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053938351
VERSION     XP_053938351.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082376.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1933
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1933
                     /product="chromodomain-helicase-DNA-binding protein 4
                     isoform X1"
                     /calculated_mol_wt=219789
     Region          165..218
                     /region_name="CHDNT"
                     /note="CHDNT (NUC034) domain; pfam08073"
                     /db_xref="CDD:462357"
     Region          374..416
                     /region_name="PHD1_CHD_II"
                     /note="PHD finger 1 found in class II
                     Chromodomain-Helicase-DNA binding (CHD) proteins; cd15531"
                     /db_xref="CDD:277006"
     Site            order(374,383..387,391,411)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277006"
     Region          453..495
                     /region_name="PHD2_CHD_II"
                     /note="PHD finger 2 found in class II
                     Chromodomain-Helicase-DNA binding (CHD) proteins; cd15532"
                     /db_xref="CDD:277007"
     Site            order(453,462..466,470,490)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277007"
     Region          500..578
                     /region_name="CD1_tandem_CHD3-4_like"
                     /note="repeat 1 of the paired tandem chromodomains of
                     chromodomain helicase DNA-binding protein 3 and 4, and
                     similar proteins; cd18667"
                     /db_xref="CDD:349314"
     Site            order(502,549,551..552,556)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:349314"
     Region          621..675
                     /region_name="CD2_tandem_CHD3-4_like"
                     /note="repeat 2 of the paired tandem chromodomains of
                     chromodomain helicase DNA-binding protein 3 and 4, and
                     similar proteins; cd18662"
                     /db_xref="CDD:349309"
     Site            order(641,658)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:349309"
     Region          726..>1282
                     /region_name="PLN03142"
                     /note="Probable chromatin-remodeling complex ATPase chain;
                     Provisional"
                     /db_xref="CDD:215601"
     Region          728..959
                     /region_name="DEXHc_CHD4"
                     /note="DEAH-box helicase domain of the chromodomain
                     helicase DNA binding protein 4; cd18056"
                     /db_xref="CDD:350814"
     Site            order(755..761,795,875..876)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350814"
     Region          1303..1346
                     /region_name="DUF1087"
                     /note="CHD subfamily II, DUF1087; pfam06465"
                     /db_xref="CDD:461922"
     Region          1390..1530
                     /region_name="CHDII_SANT-like"
                     /note="CHD subfamily II, SANT-like domain; pfam06461"
                     /db_xref="CDD:461920"
     Region          <1526..>1669
                     /region_name="PHA03169"
                     /note="hypothetical protein; Provisional"
                     /db_xref="CDD:223003"
     Region          1743..1888
                     /region_name="CHDCT2"
                     /note="CHDCT2 (NUC038) domain; pfam08074"
                     /db_xref="CDD:462358"
     CDS             1..1933
                     /gene="CHD4"
                     /coded_by="XM_054082376.1:190..5991"
                     /db_xref="GeneID:104064376"
ORIGIN      
        1 masgigspsp csggsddddm eillnnaipq hpglqslqgt qpeeepeeel lseaetpkik
       61 kkkkpkklke pkvpklskrq kkelgdssge gnefveeeee vlrsdsegsd ytpgkkkkkk
      121 lgpkkekksk akrkeeeeee eedddskepk ssaqlledwg medidhifte edyrtltnyk
      181 afsqfvrpli aaknpkiavs kmmmvlgakw refstnnpfk gssgasvaaa aaaavavves
      241 mvtnvdavlp qppvdvplrk aktkegkgpn arrkpkagpr ipdikkpktk kvaplkiklg
      301 gfgskrkrss sedddldves dfddasinsy svsdgstsrs srcrkklkag kkkkkgedds
      361 tvavdgyetd hqdycevcqq ggeiilcdtc prayhmvcld pdmekapegk wscphcekeg
      421 iqweakedns egeeiledvv gdaeeeddhh mefcrvckdg gellccdacp ssyhihclnp
      481 plpeipngew lcprctcpal kgkvqkiliw kwgqppvgpp pprppdadpn apppkplegr
      541 perqffvkwq gmsywhcswv selqlelhcq vmfrnyqrkn dmdeppsgdf ggeeeksrkr
      601 knkdpkyaem eerfyrygik pewmmihril nhsvdkkgnv hylikwrdlp ydqaswesed
      661 vdiqdydlyk qaywnhrelm rgeegrpgkk lkkvkmrkle rppetptvdp tvkydrqpey
      721 ldvtggtlhp yqleglnwlr fswaqgtdti lademglgkt vqtavflysl ykeghskgpf
      781 lvsaplstii nwerefemwa pdmyvvtyvg dkdsraiire neftfednai rggkkasrmk
      841 keaavkfhvl ltsyelitid mailgsidwa clivdeahrl knnqskffrv lngyslqhkl
      901 lltgtplqnn leelfhllnf ltperfhnle gfleefadia kedqikklhd mlgphmlrrl
      961 kadvfknmps ktelivrvel spmqkkyyky iltrnfealn argggnqvsl lnvvmdlkkc
     1021 cnhpylfpva ameapkmpng mydgsalira sgkllllqkm lknlkegghr vlifsqmtkm
     1081 ldlledfleh egykyeridg gitgnmrqea idrfnapgaq qfcfllstra gglginlata
     1141 dtviiydsdw nphndiqafs rahrigqnkk vmiyrfvtra sveeritqva kkkmmlthlv
     1201 vrpglgsktg smskqelddi lkfgteelfk deateggdnk egedssvihy ddkaierlld
     1261 rnqdetedte lqgmneylss fkvaqyvvre eemgeeeeve reiikqeesv dpdywekllr
     1321 hhyeqqqedl arnlgkgkri rkqvnyndgs qedrgsrtvf lsdwqddqsd nqsdysvase
     1381 egdedfders eaarrpsrkg lrndkdkplp pllarvggni evlgfnarqr kaflnaimry
     1441 gmppqdaftt qwlvrdlrgk sekefkayvs lfmrhlcepg adgaetfadg vpreglsrqh
     1501 vltrigvmsl irkkvqefeh vngrwsmpel aeieenkkls qpsspspktp tpstpgdtqp
     1561 ntpapiplpe egvkveegat akeqgessep ekelsasate tdvpmeqcaq pvetppqeak
     1621 spvnttegde kkvedsevke rpdepmeveg kgdvekvedr apvenpsepp vitldekdek
     1681 kdddkrdvvm lqngemlkes vderhkkavk qrfmfniadg gftelhslwq neeraatvtk
     1741 ktyeiwhrrh dywllagiin hgyarwqdiq ndpryailne pfkgemnrgn fleiknkfla
     1801 rrfklleqal vieeqlrraa ylnmsedpsh psmalntrfa eveclaeshq hlskesmagn
     1861 kpanavlhkv lkqleellsd mkadvtrlpa tiarippvav rlqmsernil srlanrssep
     1921 ppppppqqva qqq
//
LOCUS       XP_053938361            1932 aa            linear   VRT 09-MAR-2023
DEFINITION  chromodomain-helicase-DNA-binding protein 4 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053938361
VERSION     XP_053938361.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082386.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1932
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1932
                     /product="chromodomain-helicase-DNA-binding protein 4
                     isoform X2"
                     /calculated_mol_wt=219661
     Region          165..218
                     /region_name="CHDNT"
                     /note="CHDNT (NUC034) domain; pfam08073"
                     /db_xref="CDD:462357"
     Region          374..416
                     /region_name="PHD1_CHD_II"
                     /note="PHD finger 1 found in class II
                     Chromodomain-Helicase-DNA binding (CHD) proteins; cd15531"
                     /db_xref="CDD:277006"
     Site            order(374,383..387,391,411)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277006"
     Region          453..495
                     /region_name="PHD2_CHD_II"
                     /note="PHD finger 2 found in class II
                     Chromodomain-Helicase-DNA binding (CHD) proteins; cd15532"
                     /db_xref="CDD:277007"
     Site            order(453,462..466,470,490)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277007"
     Region          500..578
                     /region_name="CD1_tandem_CHD3-4_like"
                     /note="repeat 1 of the paired tandem chromodomains of
                     chromodomain helicase DNA-binding protein 3 and 4, and
                     similar proteins; cd18667"
                     /db_xref="CDD:349314"
     Site            order(502,549,551..552,556)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:349314"
     Region          621..675
                     /region_name="CD2_tandem_CHD3-4_like"
                     /note="repeat 2 of the paired tandem chromodomains of
                     chromodomain helicase DNA-binding protein 3 and 4, and
                     similar proteins; cd18662"
                     /db_xref="CDD:349309"
     Site            order(641,658)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:349309"
     Region          726..>1282
                     /region_name="PLN03142"
                     /note="Probable chromatin-remodeling complex ATPase chain;
                     Provisional"
                     /db_xref="CDD:215601"
     Region          728..959
                     /region_name="DEXHc_CHD4"
                     /note="DEAH-box helicase domain of the chromodomain
                     helicase DNA binding protein 4; cd18056"
                     /db_xref="CDD:350814"
     Site            order(755..761,795,875..876)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350814"
     Region          1303..1346
                     /region_name="DUF1087"
                     /note="CHD subfamily II, DUF1087; pfam06465"
                     /db_xref="CDD:461922"
     Region          1390..1530
                     /region_name="CHDII_SANT-like"
                     /note="CHD subfamily II, SANT-like domain; pfam06461"
                     /db_xref="CDD:461920"
     Region          <1526..>1668
                     /region_name="PHA03169"
                     /note="hypothetical protein; Provisional"
                     /db_xref="CDD:223003"
     Region          1742..1887
                     /region_name="CHDCT2"
                     /note="CHDCT2 (NUC038) domain; pfam08074"
                     /db_xref="CDD:462358"
     CDS             1..1932
                     /gene="CHD4"
                     /coded_by="XM_054082386.1:190..5988"
                     /db_xref="GeneID:104064376"
ORIGIN      
        1 masgigspsp csggsddddm eillnnaipq hpglqslqgt qpeeepeeel lseaetpkik
       61 kkkkpkklke pkvpklskrq kkelgdssge gnefveeeee vlrsdsegsd ytpgkkkkkk
      121 lgpkkekksk akrkeeeeee eedddskepk ssaqlledwg medidhifte edyrtltnyk
      181 afsqfvrpli aaknpkiavs kmmmvlgakw refstnnpfk gssgasvaaa aaaavavves
      241 mvtnvdavlp qppvdvplrk aktkegkgpn arrkpkagpr ipdikkpktk kvaplkiklg
      301 gfgskrkrss sedddldves dfddasinsy svsdgstsrs srcrkklkag kkkkkgedds
      361 tvavdgyetd hqdycevcqq ggeiilcdtc prayhmvcld pdmekapegk wscphcekeg
      421 iqweakedns egeeiledvv gdaeeeddhh mefcrvckdg gellccdacp ssyhihclnp
      481 plpeipngew lcprctcpal kgkvqkiliw kwgqppvgpp pprppdadpn apppkplegr
      541 perqffvkwq gmsywhcswv selqlelhcq vmfrnyqrkn dmdeppsgdf ggeeeksrkr
      601 knkdpkyaem eerfyrygik pewmmihril nhsvdkkgnv hylikwrdlp ydqaswesed
      661 vdiqdydlyk qaywnhrelm rgeegrpgkk lkkvkmrkle rppetptvdp tvkydrqpey
      721 ldvtggtlhp yqleglnwlr fswaqgtdti lademglgkt vqtavflysl ykeghskgpf
      781 lvsaplstii nwerefemwa pdmyvvtyvg dkdsraiire neftfednai rggkkasrmk
      841 keaavkfhvl ltsyelitid mailgsidwa clivdeahrl knnqskffrv lngyslqhkl
      901 lltgtplqnn leelfhllnf ltperfhnle gfleefadia kedqikklhd mlgphmlrrl
      961 kadvfknmps ktelivrvel spmqkkyyky iltrnfealn argggnqvsl lnvvmdlkkc
     1021 cnhpylfpva ameapkmpng mydgsalira sgkllllqkm lknlkegghr vlifsqmtkm
     1081 ldlledfleh egykyeridg gitgnmrqea idrfnapgaq qfcfllstra gglginlata
     1141 dtviiydsdw nphndiqafs rahrigqnkk vmiyrfvtra sveeritqva kkkmmlthlv
     1201 vrpglgsktg smskqelddi lkfgteelfk deateggdnk egedssvihy ddkaierlld
     1261 rnqdetedte lqgmneylss fkvaqyvvre eemgeeeeve reiikqeesv dpdywekllr
     1321 hhyeqqqedl arnlgkgkri rkqvnyndgs qedrgsrtvf lsdwqddqsd nqsdysvase
     1381 egdedfders eaarrpsrkg lrndkdkplp pllarvggni evlgfnarqr kaflnaimry
     1441 gmppqdaftt qwlvrdlrgk sekefkayvs lfmrhlcepg adgaetfadg vpreglsrqh
     1501 vltrigvmsl irkkvqefeh vngrwsmpel aeieenkkls qpsspspktp tpstpgdtqp
     1561 ntpapiplpe egvkveegat akeqgessep ekelsasate tdvpmecaqp vetppqeaks
     1621 pvnttegdek kvedsevker pdepmevegk gdvekvedra pvenpseppv itldekdekk
     1681 dddkrdvvml qngemlkesv derhkkavkq rfmfniadgg ftelhslwqn eeraatvtkk
     1741 tyeiwhrrhd ywllagiinh gyarwqdiqn dpryailnep fkgemnrgnf leiknkflar
     1801 rfklleqalv ieeqlrraay lnmsedpshp smalntrfae veclaeshqh lskesmagnk
     1861 panavlhkvl kqleellsdm kadvtrlpat iarippvavr lqmsernils rlanrssepp
     1921 pppppqqvaq qq
//
LOCUS       XP_053938370            1932 aa            linear   VRT 09-MAR-2023
DEFINITION  chromodomain-helicase-DNA-binding protein 4 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053938370
VERSION     XP_053938370.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082395.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1932
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1932
                     /product="chromodomain-helicase-DNA-binding protein 4
                     isoform X3"
                     /calculated_mol_wt=219718
     Region          165..218
                     /region_name="CHDNT"
                     /note="CHDNT (NUC034) domain; pfam08073"
                     /db_xref="CDD:462357"
     Region          374..416
                     /region_name="PHD1_CHD_II"
                     /note="PHD finger 1 found in class II
                     Chromodomain-Helicase-DNA binding (CHD) proteins; cd15531"
                     /db_xref="CDD:277006"
     Site            order(374,383..387,391,411)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277006"
     Region          453..495
                     /region_name="PHD2_CHD_II"
                     /note="PHD finger 2 found in class II
                     Chromodomain-Helicase-DNA binding (CHD) proteins; cd15532"
                     /db_xref="CDD:277007"
     Site            order(453,462..466,470,490)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277007"
     Region          500..578
                     /region_name="CD1_tandem_CHD3-4_like"
                     /note="repeat 1 of the paired tandem chromodomains of
                     chromodomain helicase DNA-binding protein 3 and 4, and
                     similar proteins; cd18667"
                     /db_xref="CDD:349314"
     Site            order(502,549,551..552,556)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:349314"
     Region          621..675
                     /region_name="CD2_tandem_CHD3-4_like"
                     /note="repeat 2 of the paired tandem chromodomains of
                     chromodomain helicase DNA-binding protein 3 and 4, and
                     similar proteins; cd18662"
                     /db_xref="CDD:349309"
     Site            order(641,658)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:349309"
     Region          726..1471
                     /region_name="PLN03142"
                     /note="Probable chromatin-remodeling complex ATPase chain;
                     Provisional"
                     /db_xref="CDD:215601"
     Region          728..959
                     /region_name="DEXHc_CHD4"
                     /note="DEAH-box helicase domain of the chromodomain
                     helicase DNA binding protein 4; cd18056"
                     /db_xref="CDD:350814"
     Site            order(755..761,795,875..876)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350814"
     Region          <1525..>1668
                     /region_name="PHA03169"
                     /note="hypothetical protein; Provisional"
                     /db_xref="CDD:223003"
     Region          1742..1887
                     /region_name="CHDCT2"
                     /note="CHDCT2 (NUC038) domain; pfam08074"
                     /db_xref="CDD:462358"
     CDS             1..1932
                     /gene="CHD4"
                     /coded_by="XM_054082395.1:190..5988"
                     /db_xref="GeneID:104064376"
ORIGIN      
        1 masgigspsp csggsddddm eillnnaipq hpglqslqgt qpeeepeeel lseaetpkik
       61 kkkkpkklke pkvpklskrq kkelgdssge gnefveeeee vlrsdsegsd ytpgkkkkkk
      121 lgpkkekksk akrkeeeeee eedddskepk ssaqlledwg medidhifte edyrtltnyk
      181 afsqfvrpli aaknpkiavs kmmmvlgakw refstnnpfk gssgasvaaa aaaavavves
      241 mvtnvdavlp qppvdvplrk aktkegkgpn arrkpkagpr ipdikkpktk kvaplkiklg
      301 gfgskrkrss sedddldves dfddasinsy svsdgstsrs srcrkklkag kkkkkgedds
      361 tvavdgyetd hqdycevcqq ggeiilcdtc prayhmvcld pdmekapegk wscphcekeg
      421 iqweakedns egeeiledvv gdaeeeddhh mefcrvckdg gellccdacp ssyhihclnp
      481 plpeipngew lcprctcpal kgkvqkiliw kwgqppvgpp pprppdadpn apppkplegr
      541 perqffvkwq gmsywhcswv selqlelhcq vmfrnyqrkn dmdeppsgdf ggeeeksrkr
      601 knkdpkyaem eerfyrygik pewmmihril nhsvdkkgnv hylikwrdlp ydqaswesed
      661 vdiqdydlyk qaywnhrelm rgeegrpgkk lkkvkmrkle rppetptvdp tvkydrqpey
      721 ldvtggtlhp yqleglnwlr fswaqgtdti lademglgkt vqtavflysl ykeghskgpf
      781 lvsaplstii nwerefemwa pdmyvvtyvg dkdsraiire neftfednai rggkkasrmk
      841 keaavkfhvl ltsyelitid mailgsidwa clivdeahrl knnqskffrv lngyslqhkl
      901 lltgtplqnn leelfhllnf ltperfhnle gfleefadia kedqikklhd mlgphmlrrl
      961 kadvfknmps ktelivrvel spmqkkyyky iltrnfealn argggnqvsl lnvvmdlkkc
     1021 cnhpylfpva ameapkmpng mydgsalira sgkllllqkm lknlkegghr vlifsqmtkm
     1081 ldlledfleh egykyeridg gitgnmrqea idrfnapgaq qfcfllstra gglginlata
     1141 dtviiydsdw nphndiqafs rahrigqnkk vmiyrfvtra sveeritqva kkkmmlthlv
     1201 vrpglgsktg smskqelddi lkfgteelfk deateggdnk egedssvihy ddkaierlld
     1261 rnqdetedte lqgmneylss fkvaqyvvre eemgeeeeve reiikqeesv dpdywekllr
     1321 hhyeqqqedl arnlgkgkri rkqvnyndgs qedrgsrtvf lsdwqddqsd nqsdysvase
     1381 egdedfders earrpsrkgl rndkdkplpp llarvggnie vlgfnarqrk aflnaimryg
     1441 mppqdafttq wlvrdlrgks ekefkayvsl fmrhlcepga dgaetfadgv preglsrqhv
     1501 ltrigvmsli rkkvqefehv ngrwsmpela eieenkklsq psspspktpt pstpgdtqpn
     1561 tpapiplpee gvkveegata keqgessepe kelsasatet dvpmeqcaqp vetppqeaks
     1621 pvnttegdek kvedsevker pdepmevegk gdvekvedra pvenpseppv itldekdekk
     1681 dddkrdvvml qngemlkesv derhkkavkq rfmfniadgg ftelhslwqn eeraatvtkk
     1741 tyeiwhrrhd ywllagiinh gyarwqdiqn dpryailnep fkgemnrgnf leiknkflar
     1801 rfklleqalv ieeqlrraay lnmsedpshp smalntrfae veclaeshqh lskesmagnk
     1861 panavlhkvl kqleellsdm kadvtrlpat iarippvavr lqmsernils rlanrssepp
     1921 pppppqqvaq qq
//
LOCUS       XP_053938378            1925 aa            linear   VRT 09-MAR-2023
DEFINITION  chromodomain-helicase-DNA-binding protein 4 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053938378
VERSION     XP_053938378.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082403.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1925
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1925
                     /product="chromodomain-helicase-DNA-binding protein 4
                     isoform X4"
                     /calculated_mol_wt=219005
     Region          157..210
                     /region_name="CHDNT"
                     /note="CHDNT (NUC034) domain; pfam08073"
                     /db_xref="CDD:462357"
     Region          366..408
                     /region_name="PHD1_CHD_II"
                     /note="PHD finger 1 found in class II
                     Chromodomain-Helicase-DNA binding (CHD) proteins; cd15531"
                     /db_xref="CDD:277006"
     Site            order(366,375..379,383,403)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277006"
     Region          445..487
                     /region_name="PHD2_CHD_II"
                     /note="PHD finger 2 found in class II
                     Chromodomain-Helicase-DNA binding (CHD) proteins; cd15532"
                     /db_xref="CDD:277007"
     Site            order(445,454..458,462,482)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277007"
     Region          492..570
                     /region_name="CD1_tandem_CHD3-4_like"
                     /note="repeat 1 of the paired tandem chromodomains of
                     chromodomain helicase DNA-binding protein 3 and 4, and
                     similar proteins; cd18667"
                     /db_xref="CDD:349314"
     Site            order(494,541,543..544,548)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:349314"
     Region          613..667
                     /region_name="CD2_tandem_CHD3-4_like"
                     /note="repeat 2 of the paired tandem chromodomains of
                     chromodomain helicase DNA-binding protein 3 and 4, and
                     similar proteins; cd18662"
                     /db_xref="CDD:349309"
     Site            order(633,650)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:349309"
     Region          718..>1274
                     /region_name="PLN03142"
                     /note="Probable chromatin-remodeling complex ATPase chain;
                     Provisional"
                     /db_xref="CDD:215601"
     Region          720..951
                     /region_name="DEXHc_CHD4"
                     /note="DEAH-box helicase domain of the chromodomain
                     helicase DNA binding protein 4; cd18056"
                     /db_xref="CDD:350814"
     Site            order(747..753,787,867..868)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350814"
     Region          1295..1338
                     /region_name="DUF1087"
                     /note="CHD subfamily II, DUF1087; pfam06465"
                     /db_xref="CDD:461922"
     Region          1382..1522
                     /region_name="CHDII_SANT-like"
                     /note="CHD subfamily II, SANT-like domain; pfam06461"
                     /db_xref="CDD:461920"
     Region          <1518..>1661
                     /region_name="PHA03169"
                     /note="hypothetical protein; Provisional"
                     /db_xref="CDD:223003"
     Region          1735..1880
                     /region_name="CHDCT2"
                     /note="CHDCT2 (NUC038) domain; pfam08074"
                     /db_xref="CDD:462358"
     CDS             1..1925
                     /gene="CHD4"
                     /coded_by="XM_054082403.1:190..5967"
                     /db_xref="GeneID:104064376"
ORIGIN      
        1 masgigspsp csggsddddm eillnnaipq hpepeeepee ellseaetpk ikkkkkpkkl
       61 kepkvpklsk rqkkelgdss gegnefveee eevlrsdseg sdytpgkkkk kklgpkkekk
      121 skakrkeeee eeeedddske pkssaqlled wgmedidhif teedyrtltn ykafsqfvrp
      181 liaaknpkia vskmmmvlga kwrefstnnp fkgssgasva aaaaaavavv esmvtnvdav
      241 lpqppvdvpl rkaktkegkg pnarrkpkag pripdikkpk tkkvaplkik lggfgskrkr
      301 sssedddldv esdfddasin sysvsdgsts rssrcrkklk agkkkkkged dstvavdgye
      361 tdhqdycevc qqggeiilcd tcprayhmvc ldpdmekape gkwscphcek egiqweaked
      421 nsegeeiled vvgdaeeedd hhmefcrvck dggellccda cpssyhihcl npplpeipng
      481 ewlcprctcp alkgkvqkil iwkwgqppvg pppprppdad pnapppkple grperqffvk
      541 wqgmsywhcs wvselqlelh cqvmfrnyqr kndmdeppsg dfggeeeksr krknkdpkya
      601 emeerfyryg ikpewmmihr ilnhsvdkkg nvhylikwrd lpydqaswes edvdiqdydl
      661 ykqaywnhre lmrgeegrpg kklkkvkmrk lerppetptv dptvkydrqp eyldvtggtl
      721 hpyqleglnw lrfswaqgtd tilademglg ktvqtavfly slykeghskg pflvsaplst
      781 iinwerefem wapdmyvvty vgdkdsraii reneftfedn airggkkasr mkkeaavkfh
      841 vlltsyelit idmailgsid waclivdeah rlknnqskff rvlngyslqh kllltgtplq
      901 nnleelfhll nfltperfhn legfleefad iakedqikkl hdmlgphmlr rlkadvfknm
      961 psktelivrv elspmqkkyy kyiltrnfea lnargggnqv sllnvvmdlk kccnhpylfp
     1021 vaameapkmp ngmydgsali rasgkllllq kmlknlkegg hrvlifsqmt kmldlledfl
     1081 ehegykyeri dggitgnmrq eaidrfnapg aqqfcfllst ragglginla tadtviiyds
     1141 dwnphndiqa fsrahrigqn kkvmiyrfvt rasveeritq vakkkmmlth lvvrpglgsk
     1201 tgsmskqeld dilkfgteel fkdeateggd nkegedssvi hyddkaierl ldrnqdeted
     1261 telqgmneyl ssfkvaqyvv reeemgeeee vereiikqee svdpdywekl lrhhyeqqqe
     1321 dlarnlgkgk rirkqvnynd gsqedrgsrt vflsdwqddq sdnqsdysva seegdedfde
     1381 rseaarrpsr kglrndkdkp lppllarvgg nievlgfnar qrkaflnaim rygmppqdaf
     1441 ttqwlvrdlr gksekefkay vslfmrhlce pgadgaetfa dgvpreglsr qhvltrigvm
     1501 slirkkvqef ehvngrwsmp elaeieenkk lsqpsspspk tptpstpgdt qpntpapipl
     1561 peegvkveeg atakeqgess epekelsasa tetdvpmeqc aqpvetppqe akspvntteg
     1621 dekkvedsev kerpdepmev egkgdvekve drapvenpse ppvitldekd ekkdddkrdv
     1681 vmlqngemlk esvderhkka vkqrfmfnia dggftelhsl wqneeraatv tkktyeiwhr
     1741 rhdywllagi inhgyarwqd iqndpryail nepfkgemnr gnfleiknkf larrfklleq
     1801 alvieeqlrr aaylnmsedp shpsmalntr faeveclaes hqhlskesma gnkpanavlh
     1861 kvlkqleell sdmkadvtrl patiarippv avrlqmsern ilsrlanrss epppppppqq
     1921 vaqqq
//
LOCUS       XP_053938387            1925 aa            linear   VRT 09-MAR-2023
DEFINITION  chromodomain-helicase-DNA-binding protein 4 isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053938387
VERSION     XP_053938387.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082412.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1925
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1925
                     /product="chromodomain-helicase-DNA-binding protein 4
                     isoform X5"
                     /calculated_mol_wt=218941
     Region          165..218
                     /region_name="CHDNT"
                     /note="CHDNT (NUC034) domain; pfam08073"
                     /db_xref="CDD:462357"
     Region          374..416
                     /region_name="PHD1_CHD_II"
                     /note="PHD finger 1 found in class II
                     Chromodomain-Helicase-DNA binding (CHD) proteins; cd15531"
                     /db_xref="CDD:277006"
     Site            order(374,383..387,391,411)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277006"
     Region          453..495
                     /region_name="PHD2_CHD_II"
                     /note="PHD finger 2 found in class II
                     Chromodomain-Helicase-DNA binding (CHD) proteins; cd15532"
                     /db_xref="CDD:277007"
     Site            order(453,462..466,470,490)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277007"
     Region          500..578
                     /region_name="CD1_tandem_CHD3-4_like"
                     /note="repeat 1 of the paired tandem chromodomains of
                     chromodomain helicase DNA-binding protein 3 and 4, and
                     similar proteins; cd18667"
                     /db_xref="CDD:349314"
     Site            order(502,549,551..552,556)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:349314"
     Region          621..675
                     /region_name="CD2_tandem_CHD3-4_like"
                     /note="repeat 2 of the paired tandem chromodomains of
                     chromodomain helicase DNA-binding protein 3 and 4, and
                     similar proteins; cd18662"
                     /db_xref="CDD:349309"
     Site            order(641,658)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:349309"
     Region          726..>1282
                     /region_name="PLN03142"
                     /note="Probable chromatin-remodeling complex ATPase chain;
                     Provisional"
                     /db_xref="CDD:215601"
     Region          728..959
                     /region_name="DEXHc_CHD4"
                     /note="DEAH-box helicase domain of the chromodomain
                     helicase DNA binding protein 4; cd18056"
                     /db_xref="CDD:350814"
     Site            order(755..761,795,875..876)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350814"
     Region          1303..1346
                     /region_name="DUF1087"
                     /note="CHD subfamily II, DUF1087; pfam06465"
                     /db_xref="CDD:461922"
     Region          1382..1522
                     /region_name="CHDII_SANT-like"
                     /note="CHD subfamily II, SANT-like domain; pfam06461"
                     /db_xref="CDD:461920"
     Region          <1518..>1661
                     /region_name="PHA03169"
                     /note="hypothetical protein; Provisional"
                     /db_xref="CDD:223003"
     Region          1735..1880
                     /region_name="CHDCT2"
                     /note="CHDCT2 (NUC038) domain; pfam08074"
                     /db_xref="CDD:462358"
     CDS             1..1925
                     /gene="CHD4"
                     /coded_by="XM_054082412.1:190..5967"
                     /db_xref="GeneID:104064376"
ORIGIN      
        1 masgigspsp csggsddddm eillnnaipq hpglqslqgt qpeeepeeel lseaetpkik
       61 kkkkpkklke pkvpklskrq kkelgdssge gnefveeeee vlrsdsegsd ytpgkkkkkk
      121 lgpkkekksk akrkeeeeee eedddskepk ssaqlledwg medidhifte edyrtltnyk
      181 afsqfvrpli aaknpkiavs kmmmvlgakw refstnnpfk gssgasvaaa aaaavavves
      241 mvtnvdavlp qppvdvplrk aktkegkgpn arrkpkagpr ipdikkpktk kvaplkiklg
      301 gfgskrkrss sedddldves dfddasinsy svsdgstsrs srcrkklkag kkkkkgedds
      361 tvavdgyetd hqdycevcqq ggeiilcdtc prayhmvcld pdmekapegk wscphcekeg
      421 iqweakedns egeeiledvv gdaeeeddhh mefcrvckdg gellccdacp ssyhihclnp
      481 plpeipngew lcprctcpal kgkvqkiliw kwgqppvgpp pprppdadpn apppkplegr
      541 perqffvkwq gmsywhcswv selqlelhcq vmfrnyqrkn dmdeppsgdf ggeeeksrkr
      601 knkdpkyaem eerfyrygik pewmmihril nhsvdkkgnv hylikwrdlp ydqaswesed
      661 vdiqdydlyk qaywnhrelm rgeegrpgkk lkkvkmrkle rppetptvdp tvkydrqpey
      721 ldvtggtlhp yqleglnwlr fswaqgtdti lademglgkt vqtavflysl ykeghskgpf
      781 lvsaplstii nwerefemwa pdmyvvtyvg dkdsraiire neftfednai rggkkasrmk
      841 keaavkfhvl ltsyelitid mailgsidwa clivdeahrl knnqskffrv lngyslqhkl
      901 lltgtplqnn leelfhllnf ltperfhnle gfleefadia kedqikklhd mlgphmlrrl
      961 kadvfknmps ktelivrvel spmqkkyyky iltrnfealn argggnqvsl lnvvmdlkkc
     1021 cnhpylfpva ameapkmpng mydgsalira sgkllllqkm lknlkegghr vlifsqmtkm
     1081 ldlledfleh egykyeridg gitgnmrqea idrfnapgaq qfcfllstra gglginlata
     1141 dtviiydsdw nphndiqafs rahrigqnkk vmiyrfvtra sveeritqva kkkmmlthlv
     1201 vrpglgsktg smskqelddi lkfgteelfk deateggdnk egedssvihy ddkaierlld
     1261 rnqdetedte lqgmneylss fkvaqyvvre eemgeeeeve reiikqeesv dpdywekllr
     1321 hhyeqqqedl arnlgkgkri rkqvnyndgs qedrdwqddq sdnqsdysva seegdedfde
     1381 rseaarrpsr kglrndkdkp lppllarvgg nievlgfnar qrkaflnaim rygmppqdaf
     1441 ttqwlvrdlr gksekefkay vslfmrhlce pgadgaetfa dgvpreglsr qhvltrigvm
     1501 slirkkvqef ehvngrwsmp elaeieenkk lsqpsspspk tptpstpgdt qpntpapipl
     1561 peegvkveeg atakeqgess epekelsasa tetdvpmeqc aqpvetppqe akspvntteg
     1621 dekkvedsev kerpdepmev egkgdvekve drapvenpse ppvitldekd ekkdddkrdv
     1681 vmlqngemlk esvderhkka vkqrfmfnia dggftelhsl wqneeraatv tkktyeiwhr
     1741 rhdywllagi inhgyarwqd iqndpryail nepfkgemnr gnfleiknkf larrfklleq
     1801 alvieeqlrr aaylnmsedp shpsmalntr faeveclaes hqhlskesma gnkpanavlh
     1861 kvlkqleell sdmkadvtrl patiarippv avrlqmsern ilsrlanrss epppppppqq
     1921 vaqqq
//
LOCUS       XP_053938394            1924 aa            linear   VRT 09-MAR-2023
DEFINITION  chromodomain-helicase-DNA-binding protein 4 isoform X6 [Cuculus
            canorus].
ACCESSION   XP_053938394
VERSION     XP_053938394.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082419.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1924
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1924
                     /product="chromodomain-helicase-DNA-binding protein 4
                     isoform X6"
                     /calculated_mol_wt=218813
     Region          165..218
                     /region_name="CHDNT"
                     /note="CHDNT (NUC034) domain; pfam08073"
                     /db_xref="CDD:462357"
     Region          374..416
                     /region_name="PHD1_CHD_II"
                     /note="PHD finger 1 found in class II
                     Chromodomain-Helicase-DNA binding (CHD) proteins; cd15531"
                     /db_xref="CDD:277006"
     Site            order(374,383..387,391,411)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277006"
     Region          453..495
                     /region_name="PHD2_CHD_II"
                     /note="PHD finger 2 found in class II
                     Chromodomain-Helicase-DNA binding (CHD) proteins; cd15532"
                     /db_xref="CDD:277007"
     Site            order(453,462..466,470,490)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277007"
     Region          500..578
                     /region_name="CD1_tandem_CHD3-4_like"
                     /note="repeat 1 of the paired tandem chromodomains of
                     chromodomain helicase DNA-binding protein 3 and 4, and
                     similar proteins; cd18667"
                     /db_xref="CDD:349314"
     Site            order(502,549,551..552,556)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:349314"
     Region          621..675
                     /region_name="CD2_tandem_CHD3-4_like"
                     /note="repeat 2 of the paired tandem chromodomains of
                     chromodomain helicase DNA-binding protein 3 and 4, and
                     similar proteins; cd18662"
                     /db_xref="CDD:349309"
     Site            order(641,658)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:349309"
     Region          726..>1282
                     /region_name="PLN03142"
                     /note="Probable chromatin-remodeling complex ATPase chain;
                     Provisional"
                     /db_xref="CDD:215601"
     Region          728..959
                     /region_name="DEXHc_CHD4"
                     /note="DEAH-box helicase domain of the chromodomain
                     helicase DNA binding protein 4; cd18056"
                     /db_xref="CDD:350814"
     Site            order(755..761,795,875..876)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350814"
     Region          1303..1346
                     /region_name="DUF1087"
                     /note="CHD subfamily II, DUF1087; pfam06465"
                     /db_xref="CDD:461922"
     Region          1382..1522
                     /region_name="CHDII_SANT-like"
                     /note="CHD subfamily II, SANT-like domain; pfam06461"
                     /db_xref="CDD:461920"
     Region          <1518..>1660
                     /region_name="PHA03169"
                     /note="hypothetical protein; Provisional"
                     /db_xref="CDD:223003"
     Region          1734..1879
                     /region_name="CHDCT2"
                     /note="CHDCT2 (NUC038) domain; pfam08074"
                     /db_xref="CDD:462358"
     CDS             1..1924
                     /gene="CHD4"
                     /coded_by="XM_054082419.1:190..5964"
                     /db_xref="GeneID:104064376"
ORIGIN      
        1 masgigspsp csggsddddm eillnnaipq hpglqslqgt qpeeepeeel lseaetpkik
       61 kkkkpkklke pkvpklskrq kkelgdssge gnefveeeee vlrsdsegsd ytpgkkkkkk
      121 lgpkkekksk akrkeeeeee eedddskepk ssaqlledwg medidhifte edyrtltnyk
      181 afsqfvrpli aaknpkiavs kmmmvlgakw refstnnpfk gssgasvaaa aaaavavves
      241 mvtnvdavlp qppvdvplrk aktkegkgpn arrkpkagpr ipdikkpktk kvaplkiklg
      301 gfgskrkrss sedddldves dfddasinsy svsdgstsrs srcrkklkag kkkkkgedds
      361 tvavdgyetd hqdycevcqq ggeiilcdtc prayhmvcld pdmekapegk wscphcekeg
      421 iqweakedns egeeiledvv gdaeeeddhh mefcrvckdg gellccdacp ssyhihclnp
      481 plpeipngew lcprctcpal kgkvqkiliw kwgqppvgpp pprppdadpn apppkplegr
      541 perqffvkwq gmsywhcswv selqlelhcq vmfrnyqrkn dmdeppsgdf ggeeeksrkr
      601 knkdpkyaem eerfyrygik pewmmihril nhsvdkkgnv hylikwrdlp ydqaswesed
      661 vdiqdydlyk qaywnhrelm rgeegrpgkk lkkvkmrkle rppetptvdp tvkydrqpey
      721 ldvtggtlhp yqleglnwlr fswaqgtdti lademglgkt vqtavflysl ykeghskgpf
      781 lvsaplstii nwerefemwa pdmyvvtyvg dkdsraiire neftfednai rggkkasrmk
      841 keaavkfhvl ltsyelitid mailgsidwa clivdeahrl knnqskffrv lngyslqhkl
      901 lltgtplqnn leelfhllnf ltperfhnle gfleefadia kedqikklhd mlgphmlrrl
      961 kadvfknmps ktelivrvel spmqkkyyky iltrnfealn argggnqvsl lnvvmdlkkc
     1021 cnhpylfpva ameapkmpng mydgsalira sgkllllqkm lknlkegghr vlifsqmtkm
     1081 ldlledfleh egykyeridg gitgnmrqea idrfnapgaq qfcfllstra gglginlata
     1141 dtviiydsdw nphndiqafs rahrigqnkk vmiyrfvtra sveeritqva kkkmmlthlv
     1201 vrpglgsktg smskqelddi lkfgteelfk deateggdnk egedssvihy ddkaierlld
     1261 rnqdetedte lqgmneylss fkvaqyvvre eemgeeeeve reiikqeesv dpdywekllr
     1321 hhyeqqqedl arnlgkgkri rkqvnyndgs qedrdwqddq sdnqsdysva seegdedfde
     1381 rseaarrpsr kglrndkdkp lppllarvgg nievlgfnar qrkaflnaim rygmppqdaf
     1441 ttqwlvrdlr gksekefkay vslfmrhlce pgadgaetfa dgvpreglsr qhvltrigvm
     1501 slirkkvqef ehvngrwsmp elaeieenkk lsqpsspspk tptpstpgdt qpntpapipl
     1561 peegvkveeg atakeqgess epekelsasa tetdvpmeca qpvetppqea kspvnttegd
     1621 ekkvedsevk erpdepmeve gkgdvekved rapvenpsep pvitldekde kkdddkrdvv
     1681 mlqngemlke svderhkkav kqrfmfniad ggftelhslw qneeraatvt kktyeiwhrr
     1741 hdywllagii nhgyarwqdi qndpryailn epfkgemnrg nfleiknkfl arrfklleqa
     1801 lvieeqlrra aylnmsedps hpsmalntrf aeveclaesh qhlskesmag nkpanavlhk
     1861 vlkqleells dmkadvtrlp atiarippva vrlqmserni lsrlanrsse pppppppqqv
     1921 aqqq
//
LOCUS       XP_053938401            1924 aa            linear   VRT 09-MAR-2023
DEFINITION  chromodomain-helicase-DNA-binding protein 4 isoform X7 [Cuculus
            canorus].
ACCESSION   XP_053938401
VERSION     XP_053938401.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082426.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1924
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1924
                     /product="chromodomain-helicase-DNA-binding protein 4
                     isoform X7"
                     /calculated_mol_wt=218870
     Region          165..218
                     /region_name="CHDNT"
                     /note="CHDNT (NUC034) domain; pfam08073"
                     /db_xref="CDD:462357"
     Region          374..416
                     /region_name="PHD1_CHD_II"
                     /note="PHD finger 1 found in class II
                     Chromodomain-Helicase-DNA binding (CHD) proteins; cd15531"
                     /db_xref="CDD:277006"
     Site            order(374,383..387,391,411)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277006"
     Region          453..495
                     /region_name="PHD2_CHD_II"
                     /note="PHD finger 2 found in class II
                     Chromodomain-Helicase-DNA binding (CHD) proteins; cd15532"
                     /db_xref="CDD:277007"
     Site            order(453,462..466,470,490)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277007"
     Region          500..578
                     /region_name="CD1_tandem_CHD3-4_like"
                     /note="repeat 1 of the paired tandem chromodomains of
                     chromodomain helicase DNA-binding protein 3 and 4, and
                     similar proteins; cd18667"
                     /db_xref="CDD:349314"
     Site            order(502,549,551..552,556)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:349314"
     Region          621..675
                     /region_name="CD2_tandem_CHD3-4_like"
                     /note="repeat 2 of the paired tandem chromodomains of
                     chromodomain helicase DNA-binding protein 3 and 4, and
                     similar proteins; cd18662"
                     /db_xref="CDD:349309"
     Site            order(641,658)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:349309"
     Region          726..1463
                     /region_name="PLN03142"
                     /note="Probable chromatin-remodeling complex ATPase chain;
                     Provisional"
                     /db_xref="CDD:215601"
     Region          728..959
                     /region_name="DEXHc_CHD4"
                     /note="DEAH-box helicase domain of the chromodomain
                     helicase DNA binding protein 4; cd18056"
                     /db_xref="CDD:350814"
     Site            order(755..761,795,875..876)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350814"
     Region          <1517..>1660
                     /region_name="PHA03169"
                     /note="hypothetical protein; Provisional"
                     /db_xref="CDD:223003"
     Region          1734..1879
                     /region_name="CHDCT2"
                     /note="CHDCT2 (NUC038) domain; pfam08074"
                     /db_xref="CDD:462358"
     CDS             1..1924
                     /gene="CHD4"
                     /coded_by="XM_054082426.1:190..5964"
                     /db_xref="GeneID:104064376"
ORIGIN      
        1 masgigspsp csggsddddm eillnnaipq hpglqslqgt qpeeepeeel lseaetpkik
       61 kkkkpkklke pkvpklskrq kkelgdssge gnefveeeee vlrsdsegsd ytpgkkkkkk
      121 lgpkkekksk akrkeeeeee eedddskepk ssaqlledwg medidhifte edyrtltnyk
      181 afsqfvrpli aaknpkiavs kmmmvlgakw refstnnpfk gssgasvaaa aaaavavves
      241 mvtnvdavlp qppvdvplrk aktkegkgpn arrkpkagpr ipdikkpktk kvaplkiklg
      301 gfgskrkrss sedddldves dfddasinsy svsdgstsrs srcrkklkag kkkkkgedds
      361 tvavdgyetd hqdycevcqq ggeiilcdtc prayhmvcld pdmekapegk wscphcekeg
      421 iqweakedns egeeiledvv gdaeeeddhh mefcrvckdg gellccdacp ssyhihclnp
      481 plpeipngew lcprctcpal kgkvqkiliw kwgqppvgpp pprppdadpn apppkplegr
      541 perqffvkwq gmsywhcswv selqlelhcq vmfrnyqrkn dmdeppsgdf ggeeeksrkr
      601 knkdpkyaem eerfyrygik pewmmihril nhsvdkkgnv hylikwrdlp ydqaswesed
      661 vdiqdydlyk qaywnhrelm rgeegrpgkk lkkvkmrkle rppetptvdp tvkydrqpey
      721 ldvtggtlhp yqleglnwlr fswaqgtdti lademglgkt vqtavflysl ykeghskgpf
      781 lvsaplstii nwerefemwa pdmyvvtyvg dkdsraiire neftfednai rggkkasrmk
      841 keaavkfhvl ltsyelitid mailgsidwa clivdeahrl knnqskffrv lngyslqhkl
      901 lltgtplqnn leelfhllnf ltperfhnle gfleefadia kedqikklhd mlgphmlrrl
      961 kadvfknmps ktelivrvel spmqkkyyky iltrnfealn argggnqvsl lnvvmdlkkc
     1021 cnhpylfpva ameapkmpng mydgsalira sgkllllqkm lknlkegghr vlifsqmtkm
     1081 ldlledfleh egykyeridg gitgnmrqea idrfnapgaq qfcfllstra gglginlata
     1141 dtviiydsdw nphndiqafs rahrigqnkk vmiyrfvtra sveeritqva kkkmmlthlv
     1201 vrpglgsktg smskqelddi lkfgteelfk deateggdnk egedssvihy ddkaierlld
     1261 rnqdetedte lqgmneylss fkvaqyvvre eemgeeeeve reiikqeesv dpdywekllr
     1321 hhyeqqqedl arnlgkgkri rkqvnyndgs qedrdwqddq sdnqsdysva seegdedfde
     1381 rsearrpsrk glrndkdkpl ppllarvggn ievlgfnarq rkaflnaimr ygmppqdaft
     1441 tqwlvrdlrg ksekefkayv slfmrhlcep gadgaetfad gvpreglsrq hvltrigvms
     1501 lirkkvqefe hvngrwsmpe laeieenkkl sqpsspspkt ptpstpgdtq pntpapiplp
     1561 eegvkveega takeqgesse pekelsasat etdvpmeqca qpvetppqea kspvnttegd
     1621 ekkvedsevk erpdepmeve gkgdvekved rapvenpsep pvitldekde kkdddkrdvv
     1681 mlqngemlke svderhkkav kqrfmfniad ggftelhslw qneeraatvt kktyeiwhrr
     1741 hdywllagii nhgyarwqdi qndpryailn epfkgemnrg nfleiknkfl arrfklleqa
     1801 lvieeqlrra aylnmsedps hpsmalntrf aeveclaesh qhlskesmag nkpanavlhk
     1861 vlkqleells dmkadvtrlp atiarippva vrlqmserni lsrlanrsse pppppppqqv
     1921 aqqq
//
LOCUS       XP_053938411            1916 aa            linear   VRT 09-MAR-2023
DEFINITION  chromodomain-helicase-DNA-binding protein 4 isoform X8 [Cuculus
            canorus].
ACCESSION   XP_053938411
VERSION     XP_053938411.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082436.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1916
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1916
                     /product="chromodomain-helicase-DNA-binding protein 4
                     isoform X8"
                     /calculated_mol_wt=218029
     Region          157..210
                     /region_name="CHDNT"
                     /note="CHDNT (NUC034) domain; pfam08073"
                     /db_xref="CDD:462357"
     Region          366..408
                     /region_name="PHD1_CHD_II"
                     /note="PHD finger 1 found in class II
                     Chromodomain-Helicase-DNA binding (CHD) proteins; cd15531"
                     /db_xref="CDD:277006"
     Site            order(366,375..379,383,403)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277006"
     Region          445..487
                     /region_name="PHD2_CHD_II"
                     /note="PHD finger 2 found in class II
                     Chromodomain-Helicase-DNA binding (CHD) proteins; cd15532"
                     /db_xref="CDD:277007"
     Site            order(445,454..458,462,482)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277007"
     Region          492..570
                     /region_name="CD1_tandem_CHD3-4_like"
                     /note="repeat 1 of the paired tandem chromodomains of
                     chromodomain helicase DNA-binding protein 3 and 4, and
                     similar proteins; cd18667"
                     /db_xref="CDD:349314"
     Site            order(494,541,543..544,548)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:349314"
     Region          613..667
                     /region_name="CD2_tandem_CHD3-4_like"
                     /note="repeat 2 of the paired tandem chromodomains of
                     chromodomain helicase DNA-binding protein 3 and 4, and
                     similar proteins; cd18662"
                     /db_xref="CDD:349309"
     Site            order(633,650)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:349309"
     Region          718..>1274
                     /region_name="PLN03142"
                     /note="Probable chromatin-remodeling complex ATPase chain;
                     Provisional"
                     /db_xref="CDD:215601"
     Region          720..951
                     /region_name="DEXHc_CHD4"
                     /note="DEAH-box helicase domain of the chromodomain
                     helicase DNA binding protein 4; cd18056"
                     /db_xref="CDD:350814"
     Site            order(747..753,787,867..868)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350814"
     Region          1295..1338
                     /region_name="DUF1087"
                     /note="CHD subfamily II, DUF1087; pfam06465"
                     /db_xref="CDD:461922"
     Region          1374..1514
                     /region_name="CHDII_SANT-like"
                     /note="CHD subfamily II, SANT-like domain; pfam06461"
                     /db_xref="CDD:461920"
     Region          <1510..>1652
                     /region_name="PHA03169"
                     /note="hypothetical protein; Provisional"
                     /db_xref="CDD:223003"
     Region          1726..1871
                     /region_name="CHDCT2"
                     /note="CHDCT2 (NUC038) domain; pfam08074"
                     /db_xref="CDD:462358"
     CDS             1..1916
                     /gene="CHD4"
                     /coded_by="XM_054082436.1:190..5940"
                     /db_xref="GeneID:104064376"
ORIGIN      
        1 masgigspsp csggsddddm eillnnaipq hpepeeepee ellseaetpk ikkkkkpkkl
       61 kepkvpklsk rqkkelgdss gegnefveee eevlrsdseg sdytpgkkkk kklgpkkekk
      121 skakrkeeee eeeedddske pkssaqlled wgmedidhif teedyrtltn ykafsqfvrp
      181 liaaknpkia vskmmmvlga kwrefstnnp fkgssgasva aaaaaavavv esmvtnvdav
      241 lpqppvdvpl rkaktkegkg pnarrkpkag pripdikkpk tkkvaplkik lggfgskrkr
      301 sssedddldv esdfddasin sysvsdgsts rssrcrkklk agkkkkkged dstvavdgye
      361 tdhqdycevc qqggeiilcd tcprayhmvc ldpdmekape gkwscphcek egiqweaked
      421 nsegeeiled vvgdaeeedd hhmefcrvck dggellccda cpssyhihcl npplpeipng
      481 ewlcprctcp alkgkvqkil iwkwgqppvg pppprppdad pnapppkple grperqffvk
      541 wqgmsywhcs wvselqlelh cqvmfrnyqr kndmdeppsg dfggeeeksr krknkdpkya
      601 emeerfyryg ikpewmmihr ilnhsvdkkg nvhylikwrd lpydqaswes edvdiqdydl
      661 ykqaywnhre lmrgeegrpg kklkkvkmrk lerppetptv dptvkydrqp eyldvtggtl
      721 hpyqleglnw lrfswaqgtd tilademglg ktvqtavfly slykeghskg pflvsaplst
      781 iinwerefem wapdmyvvty vgdkdsraii reneftfedn airggkkasr mkkeaavkfh
      841 vlltsyelit idmailgsid waclivdeah rlknnqskff rvlngyslqh kllltgtplq
      901 nnleelfhll nfltperfhn legfleefad iakedqikkl hdmlgphmlr rlkadvfknm
      961 psktelivrv elspmqkkyy kyiltrnfea lnargggnqv sllnvvmdlk kccnhpylfp
     1021 vaameapkmp ngmydgsali rasgkllllq kmlknlkegg hrvlifsqmt kmldlledfl
     1081 ehegykyeri dggitgnmrq eaidrfnapg aqqfcfllst ragglginla tadtviiyds
     1141 dwnphndiqa fsrahrigqn kkvmiyrfvt rasveeritq vakkkmmlth lvvrpglgsk
     1201 tgsmskqeld dilkfgteel fkdeateggd nkegedssvi hyddkaierl ldrnqdeted
     1261 telqgmneyl ssfkvaqyvv reeemgeeee vereiikqee svdpdywekl lrhhyeqqqe
     1321 dlarnlgkgk rirkqvnynd gsqedrdwqd dqsdnqsdys vaseegdedf derseaarrp
     1381 srkglrndkd kplppllarv ggnievlgfn arqrkaflna imrygmppqd afttqwlvrd
     1441 lrgksekefk ayvslfmrhl cepgadgaet fadgvpregl srqhvltrig vmslirkkvq
     1501 efehvngrws mpelaeieen kklsqpssps pktptpstpg dtqpntpapi plpeegvkve
     1561 egatakeqge ssepekelsa satetdvpme caqpvetppq eakspvntte gdekkvedse
     1621 vkerpdepme vegkgdvekv edrapvenps eppvitldek dekkdddkrd vvmlqngeml
     1681 kesvderhkk avkqrfmfni adggftelhs lwqneeraat vtkktyeiwh rrhdywllag
     1741 iinhgyarwq diqndpryai lnepfkgemn rgnfleiknk flarrfklle qalvieeqlr
     1801 raaylnmsed pshpsmalnt rfaeveclae shqhlskesm agnkpanavl hkvlkqleel
     1861 lsdmkadvtr lpatiaripp vavrlqmser nilsrlanrs sepppppppq qvaqqq
//
LOCUS       XP_009558227             316 aa            linear   VRT 09-MAR-2023
DEFINITION  epiphycan [Cuculus canorus].
ACCESSION   XP_009558227
VERSION     XP_009558227.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009559932.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..316
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..316
                     /product="epiphycan"
                     /calculated_mol_wt=35819
     Region          115..141
                     /region_name="LRRNT"
                     /note="Leucine rich repeat N-terminal domain; smart00013"
                     /db_xref="CDD:214470"
     Region          139..162
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <146..>295
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          163..186
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          187..206
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          207..232
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          254..284
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     CDS             1..316
                     /gene="EPYC"
                     /coded_by="XM_009559932.2:144..1094"
                     /db_xref="GeneID:104058424"
ORIGIN      
        1 mqtfvniflg lfifesvgaa pitdtiiyds efydlplgel phsfvydene gsdqlmteig
       61 talpsviqes yssaplteep eeeastpkli dgssaqgsgv lgpqtqdglp tcllctclgt
      121 tvycddreld avpplpkktt yfysrynrir kinkndfinl nnlksidmta nfiseiheda
      181 fwrlpqlkel vlrdnkirql pelpstltfi dvsknrlgrt girneafkdl helqhlyitd
      241 nnldhiplpl peslqalhlq nnniqemhed tfcrmkdfny vrraledirl dgnpinlskt
      301 pyaymclprl pvgnlm
//
LOCUS       XP_053938432             316 aa            linear   VRT 09-MAR-2023
DEFINITION  epiphycan [Cuculus canorus].
ACCESSION   XP_053938432
VERSION     XP_053938432.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082457.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..316
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..316
                     /product="epiphycan"
                     /calculated_mol_wt=35819
     Region          115..141
                     /region_name="LRRNT"
                     /note="Leucine rich repeat N-terminal domain; smart00013"
                     /db_xref="CDD:214470"
     Region          139..162
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <146..>295
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          163..186
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          187..206
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          207..232
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          254..284
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     CDS             1..316
                     /gene="EPYC"
                     /coded_by="XM_054082457.1:139..1089"
                     /db_xref="GeneID:104058424"
ORIGIN      
        1 mqtfvniflg lfifesvgaa pitdtiiyds efydlplgel phsfvydene gsdqlmteig
       61 talpsviqes yssaplteep eeeastpkli dgssaqgsgv lgpqtqdglp tcllctclgt
      121 tvycddreld avpplpkktt yfysrynrir kinkndfinl nnlksidmta nfiseiheda
      181 fwrlpqlkel vlrdnkirql pelpstltfi dvsknrlgrt girneafkdl helqhlyitd
      241 nnldhiplpl peslqalhlq nnniqemhed tfcrmkdfny vrraledirl dgnpinlskt
      301 pyaymclprl pvgnlm
//
LOCUS       XP_053938446             920 aa            linear   VRT 09-MAR-2023
DEFINITION  2-oxoadipate dehydrogenase complex component E1 [Cuculus canorus].
ACCESSION   XP_053938446
VERSION     XP_053938446.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082471.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..920
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..920
                     /product="2-oxoadipate dehydrogenase complex component E1"
                     /calculated_mol_wt=102482
     Region          16..919
                     /region_name="SucA"
                     /note="2-oxoglutarate dehydrogenase complex, dehydrogenase
                     (E1) component, and related enzymes [Energy production and
                     conversion]; COG0567"
                     /db_xref="CDD:440333"
     CDS             1..920
                     /gene="DHTKD1"
                     /coded_by="XM_054082471.1:17..2779"
                     /db_xref="GeneID:104066476"
ORIGIN      
        1 maavaaalrr alcggswrrw yrtergvygy kprkaasgra aepggpragd ravdhalarl
       61 iaayaehghk aakinplfag qavmnmvpei qelaeliqgp littgllnmg keeasledvl
      121 syldhiycgh isietsqlpt leerqwfakr feelkqeaft peekkhlckl mlesqefdhf
      181 latkfatvkr yggegaesmm gffhelfkmc aysgvtdivl gmphrgrlnl ltgllqlppe
      241 lmfrkmrgls efpenstaig dvlshltssv dldfgshrpv hvtllpnpsh leainpvavg
      301 ktrgrqqtll dgdyspessa qpgdkviclq vhgdaafsgq givpetltls nlphfrvggs
      361 ihlivnnqlg yttpperars slycsdigki vgcavihvng ddpeevvrat rlavkyqrqf
      421 rrdvivdllc yrqwghneld epfftnpsmy kiirsrksip dtyaehliaa glmneaevse
      481 iktayyakln dhlanmtlys ppptnlqahw kgfvepsaki ttwdtgmpvp llqfigvksv
      541 evpeelqmhs hllktyaqsr vqkmeegkkl dwataealaf gsllsqgfni rlsgqdvgrg
      601 tfsqrhamlv cqetddtyip lnhmspdqrg flevsnspls eeavlgfeyg msiespnllp
      661 iweaqfgdff ngaqiifdtf isggeakwll qsgivillph gydgagpehs scrmerflqm
      721 cdsseegvdg dqvnmsivhp ttpaqyfhll rrqmvrnfrk plivvspkvl lrlpaavssf
      781 eemaprttfk pvigdssvdp ksvtqvvlcs gkhyyalvkq retlgekqhn tailrleelc
      841 pfplealqqe lskyshakvf iwsqeepqnm gpwsfvsprf ekqlgvklhl vsrpplpapa
      901 vgigtlhhqq qedilaktfi
//
LOCUS       XP_053938460             354 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: transmembrane O-methyltransferase homolog
            [Cuculus canorus].
ACCESSION   XP_053938460
VERSION     XP_053938460.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082485.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 15% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..354
                     /product="LOW QUALITY PROTEIN: transmembrane
                     O-methyltransferase homolog"
                     /calculated_mol_wt=38840
     Region          186..>277
                     /region_name="TrmR"
                     /note="tRNA 5-hydroxyU34 O-methylase TrmR/YrrM
                     [Translation, ribosomal structure and biogenesis];
                     COG4122"
                     /db_xref="CDD:443298"
     CDS             1..354
                     /gene="LOC128853903"
                     /coded_by="XM_054082485.1:1..1065"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon"
                     /db_xref="GeneID:128853903"
ORIGIN      
        1 mtdetkrgac qtgtsrdgdd taprlqkesd vhvrprccrl alallplala valrwrharp
       61 llwravllrw lrdrltglrv eeralqfvql halpgdpprr pqhlrpvgag pastcpclgp
      121 dkgnalgste gdhgavgpsv aplaplwphl apsmapidss mphwclsssl cptsaphlpp
      181 mcppptgrvv erlvrgrcpr galqlgsrcg ysavvvgrsl phgatllile sdprrvdial
      241 rvlrlaglrp pavsvlcgsp eslfshwsfp pldlvllaed pqrflrtlrl lerrrllasd
      301 alllthraal paaaplfryl rssgkyrcri hrstvefhpr irddvieirf lgyg
//
LOCUS       XP_009561329             242 aa            linear   VRT 09-MAR-2023
DEFINITION  myogenic factor 6 [Cuculus canorus].
ACCESSION   XP_009561329
VERSION     XP_009561329.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563034.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561329.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..242
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..242
                     /product="myogenic factor 6"
                     /calculated_mol_wt=26342
     Region          3..98
                     /region_name="Basic"
                     /note="Myogenic Basic domain; cl11603"
                     /db_xref="CDD:472231"
     Region          93..156
                     /region_name="bHLH_TS_MRF4_Myf6"
                     /note="basic helix-loop-helix (bHLH) domain found in
                     muscle-specific regulatory factor 4 (MRF4) and similar
                     proteins; cd18934"
                     /db_xref="CDD:381504"
     Site            order(94..95,99,101..103,105,110,127..130)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381504"
     Site            order(108..109,112..113,115..116,131,134,138,140..141,145,
                     147..148)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381504"
     CDS             1..242
                     /gene="MYF6"
                     /coded_by="XM_009563034.2:93..821"
                     /db_xref="GeneID:104061148"
ORIGIN      
        1 mmmdlfetgs yffyldgeng alqqlemaeg splypgsdgt lspcqdqmpp eagsdssgee
       61 hvlappglqp phcpgqcliw acktckrksa ptdrrkaatl rerrrlkkin eafealkrrt
      121 vanpnqrlpk veilrsaisy ierlqdllhr ldqqekmqei ggdpfsfspk pgnipasdll
      181 stcgsewrsa sdhsralgas pkeggpiaes satsslrcls sivdsissde pklpsaeevv
      241 ek
//
LOCUS       XP_009564715             372 aa            linear   VRT 09-MAR-2023
DEFINITION  microtubule-associated protein 6 [Cuculus canorus].
ACCESSION   XP_009564715
VERSION     XP_009564715.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566420.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564715.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..372
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..372
                     /product="microtubule-associated protein 6"
                     /calculated_mol_wt=41239
     Region          <155..372
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     CDS             1..372
                     /gene="MAP6"
                     /coded_by="XM_009566420.2:96..1214"
                     /db_xref="GeneID:104064124"
ORIGIN      
        1 mawpcitrac ciarfwnqld kadiavplvf tkyseatehp aaprpaapie tqpggeaaaa
       61 aaepapgptr pgpaphsspp adsvmrhdyk pwkvqrpeps ckpkseyqps dtpfeketqy
      121 qkdfrawpip krgdhpwipk pgpspvlald rgspekpaqe krrkvlpekk eedpegedeh
      181 pkavragdgr ekarkkaeea ggqppepgrg raaadalnrq ikeevvaagv sssyrnefrp
      241 widvkpvkai kaksqykppe ekmthetsys aqfkgetskp tpadnkfler rrirtlysep
      301 ykeppkvekp svkpskpkkt ttshkplkka kdkqiasgra akkksaetsn takpedkeks
      361 kemnnklaea ke
//
LOCUS       NP_001404662             600 aa            linear   PLN 09-MAR-2023
DEFINITION  F-box/LRR-repeat protein 17-like [Oryza sativa Japonica Group].
ACCESSION   NP_001404662
VERSION     NP_001404662.1
DBSOURCE    REFSEQ: accession NM_001417733.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AP014959.1, CB658824.1 and AU089809.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00008650,
                              SAMD00020310 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Oryza sativa Japonica Group"
                     /db_xref="taxon:39947"
                     /chromosome="3"
                     /map="3"
     Protein         1..600
                     /product="F-box/LRR-repeat protein 17-like"
                     /calculated_mol_wt=63417
     Region          134..174
                     /region_name="F-box_SF"
                     /note="F-box domain superfamily; cl45894"
                     /db_xref="CDD:459239"
     Site            order(136..137,139..141,144..145,148,159..161,163,166)
                     /site_type="other"
                     /note="F-box motif"
                     /db_xref="CDD:438852"
     Site            order(136,140,143..144,147..148,152,154..155,159..161,163)
                     /site_type="other"
                     /note="Skp1 binding site [polypeptide binding]"
                     /db_xref="CDD:438852"
     Region          197..222
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          223..252
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          253..294
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          295..321
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          <319..>420
                     /region_name="AMN1"
                     /note="Antagonist of mitotic exit network protein 1;
                     cd09293"
                     /db_xref="CDD:187754"
     Region          326..351
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          352..377
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          378..402
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          404..429
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          430..464
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     Region          460..>529
                     /region_name="AMN1"
                     /note="Antagonist of mitotic exit network protein 1;
                     cd09293"
                     /db_xref="CDD:187754"
     Region          505..527
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275381"
     CDS             1..600
                     /gene="LOC4333510"
                     /coded_by="NM_001417733.1:105..1907"
                     /db_xref="GeneID:4333510"
ORIGIN      
        1 maslpkpppp prpktrgsyn cgrcglpkkg hvcaaggpap tpspssssga attttsgggg
       61 gggegtklrr alsfedaata sasatpsspe kkprvvpdad avgrggegev emvegqggee
      121 elkeeeeave lggravprel maevlrrlgp rgvmaaaavs rgwrdcagrv wraaeelrlr
      181 aagvslvgal lprcpalsrl slrmesdvda tilaclafsc pslgtleism sdnavnrmtg
      241 eelsrfvsek hslsvlkigg ccnlgflnln ssslsilwls dlcslsksvi ncpnmseisl
      301 cftqqsndct dlvtlmdglg rtcpnlknmh issaqlsnea vfalegaslr glcmlslilg
      361 skitdaavas ivrscaslel ldlsgssisd ngvgmickaf phtlsrllla lcpnvttcgi
      421 qfataqlpll qlmdcgmtlc aslqnekqgp yfgeingair fcpklptskk qstnqkliik
      481 hgnlkklslw gcsaidalyl ncpelndlnl nsctnlnper lllqcpklkn vhasgchdml
      541 igairnqvln efaaaephlp ckrladgskr vqlpqfaqqe psqdkkgidl rrnqctvhld
//
LOCUS       XP_053938508             275 aa            linear   VRT 09-MAR-2023
DEFINITION  folate receptor gamma [Cuculus canorus].
ACCESSION   XP_053938508
VERSION     XP_053938508.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082533.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..275
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..275
                     /product="folate receptor gamma"
                     /calculated_mol_wt=30601
     Region          50..225
                     /region_name="Folate_rec"
                     /note="Folate receptor family; pfam03024"
                     /db_xref="CDD:397250"
     CDS             1..275
                     /gene="FOLR3"
                     /coded_by="XM_054082533.1:179..1006"
                     /db_xref="GeneID:104054219"
ORIGIN      
        1 maatlalvgl flawssgtaa tasespsesp sespsespse lsasesllnv cmdakhhkta
       61 pgpegklygq cslwkdnacc tanttleahr dqsflygfnw dhcgampekc krhfiqdtcl
      121 yecspnlgpw idqadnswrk ervlhvplcr edceqwwedc qdaftckanw hkgwdwssgs
      181 nrcptgslcq rfryvfptaa dlcqriwsns yrytefhrgs grciqmwfdp srgnpnsdva
      241 ryyalggaad apggppeill lsilfllnpn llsll
//
LOCUS       XP_053938520             765 aa            linear   VRT 09-MAR-2023
DEFINITION  52 kDa repressor of the inhibitor of the protein kinase isoform X1
            [Cuculus canorus].
ACCESSION   XP_053938520
VERSION     XP_053938520.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082545.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..765
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..765
                     /product="52 kDa repressor of the inhibitor of the protein
                     kinase isoform X1"
                     /calculated_mol_wt=88067
     Region          5..86
                     /region_name="THAP"
                     /note="THAP domain; pfam05485"
                     /db_xref="CDD:461662"
     Region          <157..329
                     /region_name="DUF4371"
                     /note="Domain of unknown function (DUF4371); cl46273"
                     /db_xref="CDD:480613"
     Region          <673..727
                     /region_name="Dimer_Tnp_hAT"
                     /note="hAT family C-terminal dimerization region;
                     pfam05699"
                     /db_xref="CDD:399013"
     CDS             1..765
                     /gene="THAP12"
                     /coded_by="XM_054082545.1:53..2350"
                     /db_xref="GeneID:104064212"
ORIGIN      
        1 mpnfcaapnc trkstqsdla ffrfprdpvr cqrwvencrr adledktpdq lnkhyrlcak
       61 hfetsmicks spyrtvlrdn avptifdlts hlnnphsrhr krikelsede irtlkqqkie
      121 afereqatqe lnesneqntv seeggeqqee eavsltleer enkdylkslf eililmgkqn
      181 ipldgrneel pegiftsdnf qalleyrina gdevlrkrfe mtavnleycp ktqqkqmlei
      241 cencireetl revrdshffs ivtdevvdia geehlpvlvr fvdeshnlre efigflpyea
      301 dpeilavkfh ttvtekwgln meycrgqayi vssgfaskmk vvatrlleky pqavytlcss
      361 calnvwlaks vpvvgvsial gtieevcclf hqspqllvel dntisvlfqn nedkgnelke
      421 ilrsqwtgrh dtfevlvdlm qalvlcldav gndssvrwnn fiagrafvls saltdfdfiv
      481 tivilknvls ftrafgknlq gqtsdvffaa ssltavlhsl nevmenievy hefwfeeatn
      541 laarldvqik lpgkfrrgqq gnlnsevtse nyykeilsvp tvehiiqelk difseqhlka
      601 lkclslvpsv mgqlkfntse ehhadmyknd lpnpdtlsae lhcwrikwkh rgkdielptt
      661 iyealhlpdi rffpnvyall kvlcilpvmk venekyemgr krlkaylknt lteqrssnla
      721 llninfdtkh dldlmvdtyi klypdkvefq eelipsnnse vteda
//
LOCUS       XP_053938530             700 aa            linear   VRT 09-MAR-2023
DEFINITION  52 kDa repressor of the inhibitor of the protein kinase isoform X2
            [Cuculus canorus].
ACCESSION   XP_053938530
VERSION     XP_053938530.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082555.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..700
                     /product="52 kDa repressor of the inhibitor of the protein
                     kinase isoform X2"
                     /calculated_mol_wt=80337
     Region          <92..264
                     /region_name="DUF4371"
                     /note="Domain of unknown function (DUF4371); cl46273"
                     /db_xref="CDD:480613"
     Region          <608..662
                     /region_name="Dimer_Tnp_hAT"
                     /note="hAT family C-terminal dimerization region;
                     pfam05699"
                     /db_xref="CDD:399013"
     CDS             1..700
                     /gene="THAP12"
                     /coded_by="XM_054082555.1:2944..5046"
                     /db_xref="GeneID:104064212"
ORIGIN      
        1 micksspyrt vlrdnavpti fdltshlnnp hsrhrkrike lsedeirtlk qqkieafere
       61 qatqelnesn eqntvseegg eqqeeeavsl tleerenkdy lkslfeilil mgkqnipldg
      121 rneelpegif tsdnfqalle yrinagdevl rkrfemtavn leycpktqqk qmleicenci
      181 reetlrevrd shffsivtde vvdiageehl pvlvrfvdes hnlreefigf lpyeadpeil
      241 avkfhttvte kwglnmeycr gqayivssgf askmkvvatr llekypqavy tlcsscalnv
      301 wlaksvpvvg vsialgtiee vcclfhqspq llveldntis vlfqnnedkg nelkeilrsq
      361 wtgrhdtfev lvdlmqalvl cldavgndss vrwnnfiagr afvlssaltd fdfivtivil
      421 knvlsftraf gknlqgqtsd vffaasslta vlhslnevme nievyhefwf eeatnlaarl
      481 dvqiklpgkf rrgqqgnlns evtsenyyke ilsvptvehi iqelkdifse qhlkalkcls
      541 lvpsvmgqlk fntseehhad mykndlpnpd tlsaelhcwr ikwkhrgkdi elpttiyeal
      601 hlpdirffpn vyallkvlci lpvmkvenek yemgrkrlka ylkntlteqr ssnlallnin
      661 fdtkhdldlm vdtyiklypd kvefqeelip snnsevteda
//
LOCUS       XP_053938545             472 aa            linear   VRT 09-MAR-2023
DEFINITION  dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol
            alpha-1,2-glucosyltransferase [Cuculus canorus].
ACCESSION   XP_053938545
VERSION     XP_053938545.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082570.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..472
                     /product="dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol
                     alpha-1,2-glucosyltransferase"
                     /calculated_mol_wt=55195
     Region          31..426
                     /region_name="DIE2_ALG10"
                     /note="DIE2/ALG10 family; pfam04922"
                     /db_xref="CDD:461481"
     CDS             1..472
                     /gene="ALG10"
                     /coded_by="XM_054082570.1:12..1430"
                     /db_xref="GeneID:128853912"
ORIGIN      
        1 meraeaygfw aamsaaflls cllfagvsrr qrgpymdeaf hvpqaqaycr grflqwdpmi
       61 ttlpglylas vgvmkpaawl fgwtgsvvcs tgmlrfinll fsagnfylly llvfkihqkn
      121 kavsgfqril saltlamfpt lyfftflyyt dpgsvfftlf aylmclygnh ktsallgfcg
      181 fmfrqtnivw tvfcagnvva eklneawktk lqkkrdekip srkgpfsdfv rilqflieyl
      241 ispknlvtls altwpyivlv avffgfvfin ggivvgdrss heaclhfpql fyflsftvff
      301 sfphlltpik irkfllslrk hpvhytlitv islfliwkft yvhkylladn rhytfyvwrk
      361 vfqrhelvky vlvpvylfag wsfadmlksk sifwillyfa cllaatvpqk llefryfilp
      421 fliyrlnipf pslyrqllel afyiivnavt fylflnrtfk wpnsdeiqrf mw
//
LOCUS       XP_009555563             175 aa            linear   VRT 09-MAR-2023
DEFINITION  EKC/KEOPS complex subunit TPRKB [Cuculus canorus].
ACCESSION   XP_009555563
VERSION     XP_009555563.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557268.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..175
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..175
                     /product="EKC/KEOPS complex subunit TPRKB"
                     /calculated_mol_wt=19213
     Region          20..173
                     /region_name="CGI-121"
                     /note="Kinase binding protein CGI-121; pfam08617"
                     /db_xref="CDD:462537"
     CDS             1..175
                     /gene="TPRKB"
                     /coded_by="XM_009557268.2:257..784"
                     /db_xref="GeneID:104056060"
ORIGIN      
        1 melrqplelf pgysvtlllf trvrnaaalr kkamegaleg alinpamivd pfqifvaank
       61 avhlhkigkm ktrtlyaevi fslspnnnis dafkkfgisd sdtavlivlv adgkkpvnle
      121 divsqvegqq vsldelpqlt dtarvkkmyk itpqeekigt lvdsivcrms tkdvl
//
LOCUS       XP_053938566             175 aa            linear   VRT 09-MAR-2023
DEFINITION  EKC/KEOPS complex subunit TPRKB [Cuculus canorus].
ACCESSION   XP_053938566
VERSION     XP_053938566.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082591.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..175
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..175
                     /product="EKC/KEOPS complex subunit TPRKB"
                     /calculated_mol_wt=19213
     Region          20..173
                     /region_name="CGI-121"
                     /note="Kinase binding protein CGI-121; pfam08617"
                     /db_xref="CDD:462537"
     CDS             1..175
                     /gene="TPRKB"
                     /coded_by="XM_054082591.1:66..593"
                     /db_xref="GeneID:104056060"
ORIGIN      
        1 melrqplelf pgysvtlllf trvrnaaalr kkamegaleg alinpamivd pfqifvaank
       61 avhlhkigkm ktrtlyaevi fslspnnnis dafkkfgisd sdtavlivlv adgkkpvnle
      121 divsqvegqq vsldelpqlt dtarvkkmyk itpqeekigt lvdsivcrms tkdvl
//
LOCUS       XP_053938575             175 aa            linear   VRT 09-MAR-2023
DEFINITION  EKC/KEOPS complex subunit TPRKB [Cuculus canorus].
ACCESSION   XP_053938575
VERSION     XP_053938575.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082600.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..175
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..175
                     /product="EKC/KEOPS complex subunit TPRKB"
                     /calculated_mol_wt=19213
     Region          20..173
                     /region_name="CGI-121"
                     /note="Kinase binding protein CGI-121; pfam08617"
                     /db_xref="CDD:462537"
     CDS             1..175
                     /gene="TPRKB"
                     /coded_by="XM_054082600.1:118..645"
                     /db_xref="GeneID:104056060"
ORIGIN      
        1 melrqplelf pgysvtlllf trvrnaaalr kkamegaleg alinpamivd pfqifvaank
       61 avhlhkigkm ktrtlyaevi fslspnnnis dafkkfgisd sdtavlivlv adgkkpvnle
      121 divsqvegqq vsldelpqlt dtarvkkmyk itpqeekigt lvdsivcrms tkdvl
//
LOCUS       XP_009554913             169 aa            linear   VRT 09-MAR-2023
DEFINITION  desumoylating isopeptidase 1 [Cuculus canorus].
ACCESSION   XP_009554913
VERSION     XP_009554913.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556618.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554913.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..169
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..169
                     /product="desumoylating isopeptidase 1"
                     /calculated_mol_wt=18434
     Region          8..150
                     /region_name="Peptidase_C97"
                     /note="PPPDE putative peptidase domain; pfam05903"
                     /db_xref="CDD:461775"
     CDS             1..169
                     /gene="DESI1"
                     /coded_by="XM_009556618.2:231..740"
                     /db_xref="GeneID:104055491"
ORIGIN      
        1 meeplalhpv klyvydlskg marrlsplml gkqldgiwht siivhkdeff ygsggissca
       61 pggtllgppd svvdlgntev teeifleyls slgesmfrge synlfehncn tfsnevaqfl
      121 tgrkipsyit dlpaevlstp fgqalrplld siqiqppggn tfsrhngqs
//
LOCUS       XP_053938594             485 aa            linear   VRT 09-MAR-2023
DEFINITION  protein kinase C and casein kinase substrate in neurons protein 2
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053938594
VERSION     XP_053938594.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082619.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..485
                     /product="protein kinase C and casein kinase substrate in
                     neurons protein 2 isoform X1"
                     /calculated_mol_wt=55945
     Region          18..275
                     /region_name="F-BAR_PACSIN2"
                     /note="The F-BAR (FES-CIP4 Homology and
                     Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein
                     kinase Substrate in Neurons 2 (PACSIN2); cd07679"
                     /db_xref="CDD:153363"
     Site            order(18..20,26..27,30,33,36..37,40..41,43..44,47..48,
                     51..52,54..55,58..59,62,65..66,74..75,79,83,86..87,89,97,
                     145,149,212,227,230,234,237..238,240..242,245,248..249,
                     251..252,255..258,263..264,267,270..271,274..275)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:153363"
     Site            order(25,29,36,46,50,53,65,101,113,132,139..140,147..148,
                     150,203,207,210)
                     /site_type="other"
                     /note="putative membrane interaction site"
                     /db_xref="CDD:153363"
     Region          <353..427
                     /region_name="NPF"
                     /note="Rabosyn-5 repeating NPF sequence-motif; pfam16601"
                     /db_xref="CDD:406900"
     Region          428..483
                     /region_name="SH3_PACSIN1-2"
                     /note="Src homology 3 domain of Protein kinase C and
                     Casein kinase Substrate in Neurons 1 (PACSIN1) and PACSIN
                     2; cd11998"
                     /db_xref="CDD:212931"
     Site            order(434,436,439,443,462..463,477,479..480)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212931"
     CDS             1..485
                     /gene="PACSIN2"
                     /coded_by="XM_054082619.1:190..1647"
                     /db_xref="GeneID:104067260"
ORIGIN      
        1 msgsyddsvg vevssdsfwe vgnykrtvkr iddghrlcnd lmnciherar iekvyaqqlt
       61 ewakrwkqlv ekgpqygtve rawcafmsea ekvselhlev ksslmnedfe kiknwqkeaf
      121 hkqmmggfke tkeaedgfrk aqkpwakklk eveaakkayh aackeeklai sretnskadp
      181 alnpeqlkkl qdkverskqd vlktkekyek slkeldnatp qymenmeqvf eqcqqfeekr
      241 lrffrevlle vqkhldlsna asykniyrel eqniktadav edlrwfranq gpgmsmnwpq
      301 feewsadlnr tlsrrekkka sdgvtltgin qtgdqvsqpn khssslsvqs ntvqsvqssy
      361 npfedeeetg stvsekednk iknvssyekn qsyptdwsde esnnpfsstd angdtnpfde
      421 dtspamevrv ralydyegqe qdelsfkagd eltkmenede qgwckgrldn gqvglypany
      481 vepiq
//
LOCUS       XP_053938604             485 aa            linear   VRT 09-MAR-2023
DEFINITION  protein kinase C and casein kinase substrate in neurons protein 2
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053938604
VERSION     XP_053938604.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082629.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..485
                     /product="protein kinase C and casein kinase substrate in
                     neurons protein 2 isoform X1"
                     /calculated_mol_wt=55945
     Region          18..275
                     /region_name="F-BAR_PACSIN2"
                     /note="The F-BAR (FES-CIP4 Homology and
                     Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein
                     kinase Substrate in Neurons 2 (PACSIN2); cd07679"
                     /db_xref="CDD:153363"
     Site            order(18..20,26..27,30,33,36..37,40..41,43..44,47..48,
                     51..52,54..55,58..59,62,65..66,74..75,79,83,86..87,89,97,
                     145,149,212,227,230,234,237..238,240..242,245,248..249,
                     251..252,255..258,263..264,267,270..271,274..275)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:153363"
     Site            order(25,29,36,46,50,53,65,101,113,132,139..140,147..148,
                     150,203,207,210)
                     /site_type="other"
                     /note="putative membrane interaction site"
                     /db_xref="CDD:153363"
     Region          <353..427
                     /region_name="NPF"
                     /note="Rabosyn-5 repeating NPF sequence-motif; pfam16601"
                     /db_xref="CDD:406900"
     Region          428..483
                     /region_name="SH3_PACSIN1-2"
                     /note="Src homology 3 domain of Protein kinase C and
                     Casein kinase Substrate in Neurons 1 (PACSIN1) and PACSIN
                     2; cd11998"
                     /db_xref="CDD:212931"
     Site            order(434,436,439,443,462..463,477,479..480)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212931"
     CDS             1..485
                     /gene="PACSIN2"
                     /coded_by="XM_054082629.1:185..1642"
                     /db_xref="GeneID:104067260"
ORIGIN      
        1 msgsyddsvg vevssdsfwe vgnykrtvkr iddghrlcnd lmnciherar iekvyaqqlt
       61 ewakrwkqlv ekgpqygtve rawcafmsea ekvselhlev ksslmnedfe kiknwqkeaf
      121 hkqmmggfke tkeaedgfrk aqkpwakklk eveaakkayh aackeeklai sretnskadp
      181 alnpeqlkkl qdkverskqd vlktkekyek slkeldnatp qymenmeqvf eqcqqfeekr
      241 lrffrevlle vqkhldlsna asykniyrel eqniktadav edlrwfranq gpgmsmnwpq
      301 feewsadlnr tlsrrekkka sdgvtltgin qtgdqvsqpn khssslsvqs ntvqsvqssy
      361 npfedeeetg stvsekednk iknvssyekn qsyptdwsde esnnpfsstd angdtnpfde
      421 dtspamevrv ralydyegqe qdelsfkagd eltkmenede qgwckgrldn gqvglypany
      481 vepiq
//
LOCUS       XP_053938612             484 aa            linear   VRT 09-MAR-2023
DEFINITION  protein kinase C and casein kinase substrate in neurons protein 2
            isoform X2 [Cuculus canorus].
ACCESSION   XP_053938612
VERSION     XP_053938612.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082637.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..484
                     /product="protein kinase C and casein kinase substrate in
                     neurons protein 2 isoform X2"
                     /calculated_mol_wt=55858
     Region          18..275
                     /region_name="F-BAR_PACSIN2"
                     /note="The F-BAR (FES-CIP4 Homology and
                     Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein
                     kinase Substrate in Neurons 2 (PACSIN2); cd07679"
                     /db_xref="CDD:153363"
     Site            order(18..20,26..27,30,33,36..37,40..41,43..44,47..48,
                     51..52,54..55,58..59,62,65..66,74..75,79,83,86..87,89,97,
                     145,149,212,227,230,234,237..238,240..242,245,248..249,
                     251..252,255..258,263..264,267,270..271,274..275)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:153363"
     Site            order(25,29,36,46,50,53,65,101,113,132,139..140,147..148,
                     150,203,207,210)
                     /site_type="other"
                     /note="putative membrane interaction site"
                     /db_xref="CDD:153363"
     Region          <352..426
                     /region_name="NPF"
                     /note="Rabosyn-5 repeating NPF sequence-motif; pfam16601"
                     /db_xref="CDD:406900"
     Region          427..482
                     /region_name="SH3_PACSIN1-2"
                     /note="Src homology 3 domain of Protein kinase C and
                     Casein kinase Substrate in Neurons 1 (PACSIN1) and PACSIN
                     2; cd11998"
                     /db_xref="CDD:212931"
     Site            order(433,435,438,442,461..462,476,478..479)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212931"
     CDS             1..484
                     /gene="PACSIN2"
                     /coded_by="XM_054082637.1:190..1644"
                     /db_xref="GeneID:104067260"
ORIGIN      
        1 msgsyddsvg vevssdsfwe vgnykrtvkr iddghrlcnd lmnciherar iekvyaqqlt
       61 ewakrwkqlv ekgpqygtve rawcafmsea ekvselhlev ksslmnedfe kiknwqkeaf
      121 hkqmmggfke tkeaedgfrk aqkpwakklk eveaakkayh aackeeklai sretnskadp
      181 alnpeqlkkl qdkverskqd vlktkekyek slkeldnatp qymenmeqvf eqcqqfeekr
      241 lrffrevlle vqkhldlsna asykniyrel eqniktadav edlrwfranq gpgmsmnwpq
      301 feewsadlnr tlsrrekkka sdgvtltgin qtgdqvsqpn khsslsvqsn tvqsvqssyn
      361 pfedeeetgs tvsekednki knvssyeknq syptdwsdee snnpfsstda ngdtnpfded
      421 tspamevrvr alydyegqeq delsfkagde ltkmenedeq gwckgrldng qvglypanyv
      481 epiq
//
LOCUS       XP_053938620             446 aa            linear   VRT 09-MAR-2023
DEFINITION  protein kinase C and casein kinase substrate in neurons protein 2
            isoform X3 [Cuculus canorus].
ACCESSION   XP_053938620
VERSION     XP_053938620.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082645.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..446
                     /product="protein kinase C and casein kinase substrate in
                     neurons protein 2 isoform X3"
                     /calculated_mol_wt=51628
     Region          18..275
                     /region_name="F-BAR_PACSIN2"
                     /note="The F-BAR (FES-CIP4 Homology and
                     Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein
                     kinase Substrate in Neurons 2 (PACSIN2); cd07679"
                     /db_xref="CDD:153363"
     Site            order(18..20,26..27,30,33,36..37,40..41,43..44,47..48,
                     51..52,54..55,58..59,62,65..66,74..75,79,83,86..87,89,97,
                     145,149,212,227,230,234,237..238,240..242,245,248..249,
                     251..252,255..258,263..264,267,270..271,274..275)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:153363"
     Site            order(25,29,36,46,50,53,65,101,113,132,139..140,147..148,
                     150,203,207,210)
                     /site_type="other"
                     /note="putative membrane interaction site"
                     /db_xref="CDD:153363"
     Region          389..444
                     /region_name="SH3_PACSIN1-2"
                     /note="Src homology 3 domain of Protein kinase C and
                     Casein kinase Substrate in Neurons 1 (PACSIN1) and PACSIN
                     2; cd11998"
                     /db_xref="CDD:212931"
     Site            order(395,397,400,404,423..424,438,440..441)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212931"
     CDS             1..446
                     /gene="PACSIN2"
                     /coded_by="XM_054082645.1:190..1530"
                     /db_xref="GeneID:104067260"
ORIGIN      
        1 msgsyddsvg vevssdsfwe vgnykrtvkr iddghrlcnd lmnciherar iekvyaqqlt
       61 ewakrwkqlv ekgpqygtve rawcafmsea ekvselhlev ksslmnedfe kiknwqkeaf
      121 hkqmmggfke tkeaedgfrk aqkpwakklk eveaakkayh aackeeklai sretnskadp
      181 alnpeqlkkl qdkverskqd vlktkekyek slkeldnatp qymenmeqvf eqcqqfeekr
      241 lrffrevlle vqkhldlsna asykniyrel eqniktadav edlrwfranq gpgmsmnwpq
      301 feewsadlnr tlsrrekkka sdgvtltgin qtgdqvsqpn khssvssyek nqsyptdwsd
      361 eesnnpfsst dangdtnpfd edtspamevr vralydyegq eqdelsfkag deltkmened
      421 eqgwckgrld ngqvglypan yvepiq
//
LOCUS       XP_009564955             434 aa            linear   VRT 09-MAR-2023
DEFINITION  interferon-related developmental regulator 1 [Cuculus canorus].
ACCESSION   XP_009564955
VERSION     XP_009564955.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566660.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..434
                     /product="interferon-related developmental regulator 1"
                     /calculated_mol_wt=48763
     Region          36..330
                     /region_name="IFRD"
                     /note="Interferon-related developmental regulator (IFRD);
                     pfam05004"
                     /db_xref="CDD:461515"
     Region          375..428
                     /region_name="IFRD_C"
                     /note="Interferon-related protein conserved region;
                     pfam04836"
                     /db_xref="CDD:461452"
     CDS             1..434
                     /gene="IFRD1"
                     /coded_by="XM_009566660.2:272..1576"
                     /db_xref="GeneID:104064334"
ORIGIN      
        1 mpkpkkrggn hqrgaggqpr nvqpfsdeda sietmshcsg fsdpasfted gpevdeeatq
       61 edleyklkgf idltldksak trqaaleslk safsskilye fvmerrmtlt dsiercikkg
      121 ksdeqcaaag lacllcvqmg sgieseeifk tlgpilkkiv cdgtasiqar qacatclgic
      181 cfivtddite lcstmeclen iftkayprdr dtngvssthn tvlhisalla wtlllticpm
      241 nevkkkiemh lhklpsllsc ddlnmriaag etlallfela retdadffye dmelltdklr
      301 alatdgnkhr akvdkrkqrs vfrdvlrave erdfptemvk fgpermyidc wvkkqtydtf
      361 keilgsgmqy hlqsndflrn vfelgppvml daaalktmki srferhlyns aafkartkar
      421 skcrdkradv geff
//
LOCUS       XP_053938637             408 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-1 receptor type 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053938637
VERSION     XP_053938637.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082662.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..408
                     /product="interleukin-1 receptor type 2 isoform X1"
                     /calculated_mol_wt=46592
     Region          56..153
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          72..76
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          92..96
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          118..122
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          132..137
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          145..148
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          161..255
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          173..177
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          191..195
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          215..219
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          229..234
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          246..249
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          262..362
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          280..284
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          293..301
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          338..341
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          349..354
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..408
                     /gene="IL1R2"
                     /coded_by="XM_054082662.1:113..1339"
                     /db_xref="GeneID:104056690"
ORIGIN      
        1 maerlqnhrf qdtfppssfn flrkemcgff fvlvmstaga safrlqqvks tencpdhtvf
       61 ykhyyemhge pvvlkcpfpr ykhldisalt snitwyknds kamisgrded priwaagdal
      121 wflpamleds gvyictrrns sycaevsihl tvvektaaqe iayfqvlftf tsgkivcpdl
      181 wdftpnrtsp elkwykdalp lednnekyvi lkgsnsliit svlptdsgyy tckmsfpyed
      241 vtyeitrtih letveqekrf tpiivyptqk ttsaalgskm tlpckvfvgl sshvhtdvew
      301 landttvsvv ykqsrvtege rqeivengen fievplifds veevdfytdf tclarntygy
      361 qvlptrvkqk aadlswyiam ipvalacvil ggicihkcwm rradkgyv
//
LOCUS       XP_053938645             383 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-1 receptor type 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053938645
VERSION     XP_053938645.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082670.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..383
                     /product="interleukin-1 receptor type 2 isoform X2"
                     /calculated_mol_wt=43513
     Region          31..128
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          47..51
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          67..71
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          93..97
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          107..112
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          120..123
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          136..230
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          148..152
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          166..170
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          190..194
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          204..209
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          221..224
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          237..337
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          255..259
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          268..276
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          313..316
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          324..329
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..383
                     /gene="IL1R2"
                     /coded_by="XM_054082670.1:46..1197"
                     /db_xref="GeneID:104056690"
ORIGIN      
        1 mcgfffvlvm stagasafrl qqvkstencp dhtvfykhyy emhgepvvlk cpfprykhld
       61 isaltsnitw ykndskamis grdedpriwa agdalwflpa mledsgvyic trrnssycae
      121 vsihltvvek taaqeiayfq vlftftsgki vcpdlwdftp nrtspelkwy kdalplednn
      181 ekyvilkgsn sliitsvlpt dsgyytckms fpyedvtyei trtihletve qekrftpiiv
      241 yptqkttsaa lgskmtlpck vfvglsshvh tdvewlandt tvsvvykqsr vtegerqeiv
      301 engenfievp lifdsveevd fytdftclar ntygyqvlpt rvkqkaadls wyiamipval
      361 acvilggici hkcwmrradk gyv
//
LOCUS       XP_053938650             381 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-1 receptor type 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053938650
VERSION     XP_053938650.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082675.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..381
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..381
                     /product="interleukin-1 receptor type 2 isoform X3"
                     /calculated_mol_wt=43699
     Region          56..153
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          72..76
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          92..96
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          118..122
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          132..137
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          145..148
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          161..255
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          173..177
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          191..195
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          215..219
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          229..234
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          246..249
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          262..362
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          280..284
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          293..301
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          338..341
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          349..354
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..381
                     /gene="IL1R2"
                     /coded_by="XM_054082675.1:113..1258"
                     /db_xref="GeneID:104056690"
ORIGIN      
        1 maerlqnhrf qdtfppssfn flrkemcgff fvlvmstaga safrlqqvks tencpdhtvf
       61 ykhyyemhge pvvlkcpfpr ykhldisalt snitwyknds kamisgrded priwaagdal
      121 wflpamleds gvyictrrns sycaevsihl tvvektaaqe iayfqvlftf tsgkivcpdl
      181 wdftpnrtsp elkwykdalp lednnekyvi lkgsnsliit svlptdsgyy tckmsfpyed
      241 vtyeitrtih letveqekrf tpiivyptqk ttsaalgskm tlpckvfvgl sshvhtdvew
      301 landttvsvv ykqsrvtege rqeivengen fievplifds veevdfytdf tclarntygy
      361 qvlptrvkqk erevtdvglw l
//
LOCUS       XP_053938662             988 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: phosphatidylinositol 3,4,5-trisphosphate
            5-phosphatase 2 [Cuculus canorus].
ACCESSION   XP_053938662
VERSION     XP_053938662.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082687.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 12% of CDS bases
            frameshifts :: corrected 5 indels
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..988
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..988
                     /product="LOW QUALITY PROTEIN: phosphatidylinositol
                     3,4,5-trisphosphate 5-phosphatase 2"
                     /calculated_mol_wt=109639
     Region          5..107
                     /region_name="SH2_SHIP"
                     /note="Src homology 2 (SH2) domain found in SH2-containing
                     inositol-5'-phosphatase (SHIP) and SLAM-associated protein
                     (SAP); cd10343"
                     /db_xref="CDD:198206"
     Site            order(16,35,56,58)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:198206"
     Site            order(56..57,69..70,75,78,94..96)
                     /site_type="other"
                     /note="hydrophobic binding pocket [polypeptide binding]"
                     /db_xref="CDD:198206"
     Region          344..647
                     /region_name="EEP"
                     /note="Exonuclease-Endonuclease-Phosphatase (EEP) domain
                     superfamily; cl00490"
                     /db_xref="CDD:469791"
     Site            order(352,393,481,527,529,610,637..638)
                     /site_type="active"
                     /note="putative catalytic site [active]"
                     /db_xref="CDD:197306"
     Site            order(393,637)
                     /site_type="other"
                     /note="putative metal binding site [ion binding]"
                     /db_xref="CDD:197306"
     Site            order(481,529,638)
                     /site_type="other"
                     /note="putative phosphate binding site [ion binding]"
                     /db_xref="CDD:197306"
     CDS             1..988
                     /gene="INPPL1"
                     /coded_by="XM_054082687.1:13..2979"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 3 bases in 3 codons;
                     deleted 3 bases in 2 codons"
                     /db_xref="GeneID:128853920"
ORIGIN      
        1 magcpaplwy hrdlsraaae eqlaragrdg sflvrdsesv agafalcllf qkhvhtyxil
       61 pdgddglavq tsqgvqvkrf rtltelvaly lqpnqglvct llfpverekd ngetadcsas
      121 gpggswslce dyvgrwyssg prggpcrgst alphlhrnpp ellpnslhsl gspqgssepe
      181 lqrlglkltl lrdllgglek kalralqels lgvppapppa hpkpksvpvh sfevkadaar
      241 gelsklgkaq rqtlsvdveg grlvllrrhr eghedwscfp hhrirqivks qrvpnklavv
      301 fekdkdktqr kdfvfvsark reafcqllql mknrhshqde pdmisifigt wnmgsvpppk
      361 nitswftsrg lgktldeatv aiphdlyvfg tqenslsdke wvdflraalk dftdveyrpv
      421 alqslwnikv vvlvkaehea rishvgtssv ktgiantlgn kgavgvsflf ngtslgfvnc
      481 hltsggektp rrnqnyldil rlltlgdkql nafdislrft hlfwfgdlny rldmdvqeil
      541 nyiarkeldp llkvdqlnle kekhkiflrf eeeditfppt yryergsrdt yvwhkqkptg
      601 irtnvpswcd rilwksypet hincnsygct ddivtsdhsp vfasfevgvt sqfvskkgls
      661 ktsdqayief esieaivkts srtkffiefy stcleefkks fendsqssdn inflkvqwss
      721 rqlptlkpil sdleylqdqx scspfksldg yesygecvia lksmigstsq qfltflshrg
      781 eetgnirgsm rvrvpserig trerlyewis vdrddsvaar akgavgavga vganadgnrc
      841 qrgsgesqrl lrnpgggsfp ileethsqsr tpgmdsdska eapepqrssf tnpayfvleg
      901 vpqflsppsp repqlfapxi fprpplsphv lpgippesss dedmtppnlp pptfpppplp
      961 rgspesedpk nrppytdgtp qklpggsp
//
LOCUS       XP_053938670             247 aa            linear   VRT 09-MAR-2023
DEFINITION  chromobox protein homolog 7 isoform X1 [Cuculus canorus].
ACCESSION   XP_053938670
VERSION     XP_053938670.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082695.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..247
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..247
                     /product="chromobox protein homolog 7 isoform X1"
                     /calculated_mol_wt=28203
     Region          7..62
                     /region_name="CD_Cbx7"
                     /note="chromodomain of chromobox homolog 7; cd18646"
                     /db_xref="CDD:349293"
     Site            order(10..13,30,32..33,35,39,41..44,47..50,52..53,56)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:349293"
     Region          204..233
                     /region_name="CBX7_C"
                     /note="CBX family C-terminal motif; pfam17218"
                     /db_xref="CDD:465385"
     CDS             1..247
                     /gene="CBX7"
                     /coded_by="XM_054082695.1:117..860"
                     /db_xref="GeneID:104065895"
ORIGIN      
        1 melsaigeqv favesirkkr vrkgkveylv kwkgwppkys twepedhild prlvvayeek
       61 eerdrasgyr krgpkpkrll lqrlygmdlr sahkgkeklc fslarrfggg dsslpgakpg
      121 qaefsektgg tvlpfslrkq rknqkylrls rkkfprmasl esrncrheff lndavglear
      181 qgtedweamq dtskeadvdg slpwiptvpp sevtvtdita nsitvtfrea qvaegffrdr
      241 nmqkrav
//
LOCUS       XP_053938680             246 aa            linear   VRT 09-MAR-2023
DEFINITION  chromobox protein homolog 7 isoform X2 [Cuculus canorus].
ACCESSION   XP_053938680
VERSION     XP_053938680.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082705.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..246
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..246
                     /product="chromobox protein homolog 7 isoform X2"
                     /calculated_mol_wt=28132
     Region          7..62
                     /region_name="CD_Cbx7"
                     /note="chromodomain of chromobox homolog 7; cd18646"
                     /db_xref="CDD:349293"
     Site            order(10..13,30,32..33,35,39,41..44,47..50,52..53,56)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:349293"
     Region          203..232
                     /region_name="CBX7_C"
                     /note="CBX family C-terminal motif; pfam17218"
                     /db_xref="CDD:465385"
     CDS             1..246
                     /gene="CBX7"
                     /coded_by="XM_054082705.1:117..857"
                     /db_xref="GeneID:104065895"
ORIGIN      
        1 melsaigeqv favesirkkr vrkgkveylv kwkgwppkys twepedhild prlvvayeek
       61 eerdrasgyr krgpkpkrll lqrlygmdlr sahkgkeklc fslarrfggg dsslpgakpg
      121 qaefsektgg tvlpfslrkq rknqkylrls rkkfprmasl esrncrheff lndavglear
      181 qgtedweamq dtskedvdgs lpwiptvpps evtvtditan sitvtfreaq vaegffrdrn
      241 mqkrav
//
LOCUS       XP_009566723             244 aa            linear   VRT 09-MAR-2023
DEFINITION  chromobox protein homolog 7 isoform X3 [Cuculus canorus].
ACCESSION   XP_009566723
VERSION     XP_009566723.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568428.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..244
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..244
                     /product="chromobox protein homolog 7 isoform X3"
                     /calculated_mol_wt=27809
     Region          7..62
                     /region_name="CD_Cbx7"
                     /note="chromodomain of chromobox homolog 7; cd18646"
                     /db_xref="CDD:349293"
     Site            order(10..13,30,32..33,35,39,41..44,47..50,52..53,56)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:349293"
     Region          204..233
                     /region_name="CBX7_C"
                     /note="CBX family C-terminal motif; pfam17218"
                     /db_xref="CDD:465385"
     CDS             1..244
                     /gene="CBX7"
                     /coded_by="XM_009568428.2:116..850"
                     /db_xref="GeneID:104065895"
ORIGIN      
        1 melsaigeqv favesirkkr vrkgkveylv kwkgwppkys twepedhild prlvvayeek
       61 eerdrasgyr krgpkpkrll lqrlygmdlr sahkgkeklc fslarrfggg dsslpgakpg
      121 qaefsektgg tvlpfslrkq rknqkylrls rkkfprmasl esrncrheff lndavglear
      181 qgtedweamq dtskeadvdg slpwiptvpp sevtvtdita nsitvtfrea qvaegffrdr
      241 saqf
//
LOCUS       XP_053938699             243 aa            linear   VRT 09-MAR-2023
DEFINITION  chromobox protein homolog 7 isoform X4 [Cuculus canorus].
ACCESSION   XP_053938699
VERSION     XP_053938699.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082724.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..243
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..243
                     /product="chromobox protein homolog 7 isoform X4"
                     /calculated_mol_wt=27738
     Region          7..62
                     /region_name="CD_Cbx7"
                     /note="chromodomain of chromobox homolog 7; cd18646"
                     /db_xref="CDD:349293"
     Site            order(10..13,30,32..33,35,39,41..44,47..50,52..53,56)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:349293"
     Region          203..232
                     /region_name="CBX7_C"
                     /note="CBX family C-terminal motif; pfam17218"
                     /db_xref="CDD:465385"
     CDS             1..243
                     /gene="CBX7"
                     /coded_by="XM_054082724.1:116..847"
                     /db_xref="GeneID:104065895"
ORIGIN      
        1 melsaigeqv favesirkkr vrkgkveylv kwkgwppkys twepedhild prlvvayeek
       61 eerdrasgyr krgpkpkrll lqrlygmdlr sahkgkeklc fslarrfggg dsslpgakpg
      121 qaefsektgg tvlpfslrkq rknqkylrls rkkfprmasl esrncrheff lndavglear
      181 qgtedweamq dtskedvdgs lpwiptvpps evtvtditan sitvtfreaq vaegffrdrs
      241 aqf
//
LOCUS       XP_053938711             494 aa            linear   VRT 09-MAR-2023
DEFINITION  protein O-glucosyltransferase 2 [Cuculus canorus].
ACCESSION   XP_053938711
VERSION     XP_053938711.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082736.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..494
                     /product="protein O-glucosyltransferase 2"
                     /calculated_mol_wt=56874
     Region          27..122
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          142..494
                     /region_name="Glyco_transf_90"
                     /note="Glycosyl transferase family 90; cl23835"
                     /db_xref="CDD:329112"
     CDS             1..494
                     /gene="POGLUT2"
                     /coded_by="XM_054082736.1:140..1624"
                     /db_xref="GeneID:104062970"
ORIGIN      
        1 mralwplcla lgavaaggap sprlspvwgp glragaalpa ryfhiqavga egrrftsspg
       61 entfqvkita pdeqftrvgv qvldrkdgsf lvryrmyasy kslkievkig dkhvakspyi
      121 lkgpvyhenc dcpqeessaw leemncpqti pqiqrdlanf pivdpdkiak eipqrfgqrq
      181 slchytvkdn evyiktygeh vgfrifmdai llsltrkvkm pdveffvnlg dwplekrksp
      241 qnlhpifswc gsseskdivm ptydltdsvl etmgrvsldm msvqantgps wedknttafw
      301 rgrdsrkerl elvklsrkyp eiidaaftnf fffkhdesly gpivkhisff dffkykyqin
      361 idgtvaayrl pyllagnsvv lkqdsiyyeh fynelqpwkh yipfkndlsd llekiqwake
      421 hdeeakniak sgqefarnnl mgdhifcyyf klfqeyaslq vsepkirdgm ekvqqpdddl
      481 fpctchrkka rdel
//
LOCUS       XP_053938722             262 aa            linear   VRT 09-MAR-2023
DEFINITION  testis-expressed protein 30 isoform X1 [Cuculus canorus].
ACCESSION   XP_053938722
VERSION     XP_053938722.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082747.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..262
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..262
                     /product="testis-expressed protein 30 isoform X1"
                     /calculated_mol_wt=28995
     Region          66..259
                     /region_name="COG3571"
                     /note="Predicted hydrolase of the alpha/beta-hydrolase
                     fold [General function prediction only]"
                     /db_xref="CDD:442792"
     CDS             1..262
                     /gene="TEX30"
                     /coded_by="XM_054082747.1:33..821"
                     /db_xref="GeneID:104062969"
ORIGIN      
        1 mgpeegykdd wragaasirg qaervglvqp gegkaprrsy sdllvkvkip fgnkyldaif
       61 svpekkstcg vilthgaggd mnfphlvsla aylashgvlc lrftckglni ayrtkafkav
      121 veylklsddy klsgvflagr smgsraaasv irqlsqdddd dfiqglvcls yplhrpklqs
      181 klrdedllfi rcpvlfvsgs ademcekqll edvarkmkap kkihwidkan hgmavkgrtt
      241 ddvmeeinaq vfswlrenie le
//
LOCUS       XP_053938731             224 aa            linear   VRT 09-MAR-2023
DEFINITION  testis-expressed protein 30 isoform X2 [Cuculus canorus].
ACCESSION   XP_053938731
VERSION     XP_053938731.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082756.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..224
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..224
                     /product="testis-expressed protein 30 isoform X2"
                     /calculated_mol_wt=24841
     Region          28..221
                     /region_name="COG3571"
                     /note="Predicted hydrolase of the alpha/beta-hydrolase
                     fold [General function prediction only]"
                     /db_xref="CDD:442792"
     CDS             1..224
                     /gene="TEX30"
                     /coded_by="XM_054082756.1:47..721"
                     /db_xref="GeneID:104062969"
ORIGIN      
        1 msgqaevkvk ipfgnkylda ifsvpekkst cgvilthgag gdmnfphlvs laaylashgv
       61 lclrftckgl niayrtkafk avveylklsd dyklsgvfla grsmgsraaa svirqlsqdd
      121 dddfiqglvc lsyplhrpkl qsklrdedll fircpvlfvs gsademcekq lledvarkmk
      181 apkkihwidk anhgmavkgr ttddvmeein aqvfswlren iele
//
LOCUS       XP_053938740             470 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear pore complex protein Nup50 isoform X1 [Cuculus canorus].
ACCESSION   XP_053938740
VERSION     XP_053938740.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082765.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..470
                     /product="nuclear pore complex protein Nup50 isoform X1"
                     /calculated_mol_wt=49943
     Region          2..64
                     /region_name="NUP50"
                     /note="NUP50 (Nucleoporin 50 kDa); pfam08911"
                     /db_xref="CDD:462629"
     Region          353..468
                     /region_name="RanBD_NUP50"
                     /note="Nucleoporin 50 Ran-binding domain; cd13170"
                     /db_xref="CDD:269991"
     Site            order(366,368..370,374..378,394,396,398..399,404..406,409,
                     411,415,419,427,429,446,450)
                     /site_type="other"
                     /note="putative RAN binding site [polypeptide binding]"
                     /db_xref="CDD:269991"
     CDS             1..470
                     /gene="NUP50"
                     /coded_by="XM_054082765.1:272..1684"
                     /db_xref="GeneID:104062817"
ORIGIN      
        1 makriaekel tdrnwdqede aeevgtfsva seevlknrai kkakrrnvgs esesggafkg
       61 fkgfilpsgk ggggfsgfgn gagikplegl sngsssvcst psfsslktts etpspfgstm
      121 sngptattft ekkvaspkan ggsqpsssgy aqskvcsssa yhkqlaalnc svrdwiakhv
      181 nanplcdltp ifidyekyla nieqqhgsss dsgsenesnk tpasqsnvst fgnskiqqgs
      241 tflfnnkted asdkkpeaas ekkdpslvat stvsfnfgks vdssvlgslg sgtlssfsfs
      301 pgnsglfgkd anqaksvpav stnvleaqte sghnddkgge eeeeeppkvi vneikeddaf
      361 yskkcklfyk kdnefkekgv gtlhlkpagn ektqllvrad tnlgnillnv lippkmpctr
      421 tgknnvlivc vpnppidekn psvpvtmlir vktsedadel hkillekkea
//
LOCUS       XP_053938747             405 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear pore complex protein Nup50 isoform X2 [Cuculus canorus].
ACCESSION   XP_053938747
VERSION     XP_053938747.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082772.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..405
                     /product="nuclear pore complex protein Nup50 isoform X2"
                     /calculated_mol_wt=42774
     Region          2..64
                     /region_name="NUP50"
                     /note="NUP50 (Nucleoporin 50 kDa); pfam08911"
                     /db_xref="CDD:462629"
     Region          353..>402
                     /region_name="PH-like"
                     /note="Pleckstrin homology-like domain; cl17171"
                     /db_xref="CDD:473070"
     CDS             1..405
                     /gene="NUP50"
                     /coded_by="XM_054082772.1:273..1490"
                     /db_xref="GeneID:104062817"
ORIGIN      
        1 makriaekel tdrnwdqede aeevgtfsva seevlknrai kkakrrnvgs esesggafkg
       61 fkgfilpsgk ggggfsgfgn gagikplegl sngsssvcst psfsslktts etpspfgstm
      121 sngptattft ekkvaspkan ggsqpsssgy aqskvcsssa yhkqlaalnc svrdwiakhv
      181 nanplcdltp ifidyekyla nieqqhgsss dsgsenesnk tpasqsnvst fgnskiqqgs
      241 tflfnnkted asdkkpeaas ekkdpslvat stvsfnfgks vdssvlgslg sgtlssfsfs
      301 pgnsglfgkd anqaksvpav stnvleaqte sghnddkgge eeeeeppkvi vneikeddaf
      361 yskkcklfyk kdnefkekgv gtlhlkpagn ektqllvrad tnlvl
//
LOCUS       XP_053938758             198 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 140 [Cuculus canorus].
ACCESSION   XP_053938758
VERSION     XP_053938758.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082783.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..198
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..198
                     /product="transmembrane protein 140"
                     /calculated_mol_wt=22292
     Region          12..180
                     /region_name="TM140"
                     /note="TM140 protein family; pfam14985"
                     /db_xref="CDD:464421"
     CDS             1..198
                     /gene="TMEM140"
                     /coded_by="XM_054082783.1:416..1012"
                     /db_xref="GeneID:104068658"
ORIGIN      
        1 mhagtrmgll qqrctghllf klilleaagt vvlmlyallw eagnlvnlpd kcigfynfcv
       61 wnktaeklqc leykdlqvig isplgmvlal vcvysclvfs ifyfiflalf seeregwkei
      121 rivliiktti lfgglvtylf qisewielsd ftggflallg tqallllqil tatmylrwak
      181 hthlcqspft eealligi
//
LOCUS       XP_053938766             198 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 140 [Cuculus canorus].
ACCESSION   XP_053938766
VERSION     XP_053938766.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082791.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..198
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..198
                     /product="transmembrane protein 140"
                     /calculated_mol_wt=22292
     Region          12..180
                     /region_name="TM140"
                     /note="TM140 protein family; pfam14985"
                     /db_xref="CDD:464421"
     CDS             1..198
                     /gene="TMEM140"
                     /coded_by="XM_054082791.1:415..1011"
                     /db_xref="GeneID:104068658"
ORIGIN      
        1 mhagtrmgll qqrctghllf klilleaagt vvlmlyallw eagnlvnlpd kcigfynfcv
       61 wnktaeklqc leykdlqvig isplgmvlal vcvysclvfs ifyfiflalf seeregwkei
      121 rivliiktti lfgglvtylf qisewielsd ftggflallg tqallllqil tatmylrwak
      181 hthlcqspft eealligi
//
LOCUS       XP_053938785            1410 aa            linear   VRT 09-MAR-2023
DEFINITION  hepatocyte growth factor receptor isoform X1 [Cuculus canorus].
ACCESSION   XP_053938785
VERSION     XP_053938785.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082810.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1410
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1410
                     /product="hepatocyte growth factor receptor isoform X1"
                     /calculated_mol_wt=158205
     Region          53..543
                     /region_name="Sema_MET"
                     /note="The Sema domain, a protein interacting module, of
                     MET (also called hepatocyte growth factor receptor, HGFR);
                     cd11278"
                     /db_xref="CDD:200539"
     Site            order(151..154,175,194,218..220,246,248..251,257..258,314)
                     /site_type="other"
                     /note="HGF binding site [polypeptide binding]"
                     /db_xref="CDD:200539"
     Site            order(329,359..362,397,404,454..455,459,497..498)
                     /site_type="other"
                     /note="InlB binding site [polypeptide binding]"
                     /db_xref="CDD:200539"
     Region          547..589
                     /region_name="PSI"
                     /note="domain found in Plexins, Semaphorins and Integrins;
                     smart00423"
                     /db_xref="CDD:214655"
     Region          591..684
                     /region_name="IPT_plexin_repeat1"
                     /note="First repeat of the IPT domain of Plexins and Cell
                     Surface Receptors (PCSR) . Plexins are involved in the
                     regulation of cell proliferation and of cellular adhesion
                     and repulsion receptors. In general, there are three
                     copies of the IPT domain present...; cd01180"
                     /db_xref="CDD:238585"
     Region          685..769
                     /region_name="IPT_plexin_repeat2"
                     /note="Second repeat of the IPT domain of Plexins and Cell
                     Surface Receptors (PCSR) . Plexins are involved in the
                     regulation of cell proliferation and of cellular adhesion
                     and repulsion receptors. In general, there are three
                     copies of the IPT domain present...; cd01179"
                     /db_xref="CDD:238584"
     Region          771..866
                     /region_name="IPT"
                     /note="Immunoglobulin-like fold, Plexins, Transcription
                     factors (IPT). IPTs are also known as Transcription factor
                     ImmunoGlobin (TIG) domains. They are present in
                     intracellular transcription factors, cell surface
                     receptors (such as plexins and scatter factor...; cl15674"
                     /db_xref="CDD:472823"
     Region          868..947
                     /region_name="IPT_PCSR"
                     /note="IPT domain of Plexins and Cell Surface Receptors
                     (PCSR) and related proteins . This subgroup contains IPT
                     domains of plexins, receptors, like the
                     plasminogen-related growth factor receptors, the
                     hepatocyte growth factor-scatter factors, and the...;
                     cd00603"
                     /db_xref="CDD:238337"
     Region          1111..1372
                     /region_name="PTKc_Met_Ron"
                     /note="Catalytic domain of the Protein Tyrosine Kinases,
                     Met and Ron; cd05058"
                     /db_xref="CDD:270649"
     Site            order(1113..1116,1121,1137,1139,1169,1186..1189,
                     1192..1193,1233,1237..1238,1240,1250..1251,1271..1275,
                     1284,1318)
                     /site_type="active"
                     /db_xref="CDD:270649"
     Site            order(1113..1116,1121,1137,1139,1169,1186..1189,
                     1192..1193,1237..1238,1240,1250..1251)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270649"
     Site            order(1233,1237,1271..1275,1284,1318)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270649"
     Site            order(1250..1269,1271..1277)
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270649"
     CDS             1..1410
                     /gene="MET"
                     /coded_by="XM_054082810.1:52..4284"
                     /db_xref="GeneID:104064326"
ORIGIN      
        1 mftdhtlqeq kaslwqelrv enkikiltmk pftayssvfi vflfallqrs hgqckeaakk
       61 semnlsvkyd lpnfiaetli qnvvlynrhv yigavnkiyv lnetlhnisv yktgpvlenp
      121 dcapcedckd kanlsnsvwe dnvnmallle tyyddqlisc gsvskgvchr hiiqpdnpad
      181 iesevhcmys prvdgeadnc pdcvvstlgt kvlvtekdrf vnffvgntva stfqpphvlh
      241 sisvrrlket qdgfefltdq syidilpqfr dsypiryvha fendhfvyfl tvqresldsq
      301 afhtriirfc tldsemrsym emplecifte krrkrsirke vfnilqaayv skpgaalaye
      361 mglglnddil ygvfaqskpd sseptnrsav cavsvrtine ffnkivdkqn mkclqhfygk
      421 eskyclnraf srnasycraq ddeyrlevtt plqrvdlfmg qfnsvlltsi svftkgnltv
      481 anlgtsegrf mqivvsrsep taphvsfqld shpvspqvvv ensladdgyt lvvtgrkvtk
      541 iplqgpgchh fgscsqclla ppfmqcgwcs qrclrstecp dstwtqdtcl prvyeilpss
      601 apleggtklt lcgwdfgfsk ynrfelknti vhiggqical eakssnknkl ectvpaaknp
      661 sfnisssisv gygktvfntf syvnpvitsi sptygpksgg tlltvagkyl nsgksrkifv
      721 gekpctlksv santvecytp aqripqeyrv rvgideaird ssshftyred pvvlkihpak
      781 sflsggstit aqginlnsvc fpqmvitvpk lgmnfsvacn hrssseiicc ttpslkafnl
      841 qppfvtkvff ifdgvsslyf dfdyvnnpvf khfekplfis rgnqnvleik gnyidseavk
      901 gevlkvgnks cenlllqses ilctvpsdll kssselniew kqevlstvig kvlirqeqnf
      961 tgliagvvst svliliflvf flwrrkkkqi kdlgsdlvry dgrvhtphld rlvsarsvsp
     1021 ttemvssesv dyrstfledq fpsmsqngsc rpaqyphsdl spilssgdsd laspllqtnv
     1081 hidisalnpd lvkevqhvvi gadslivhfs evigrghfgc vyhgtlldnd grkihcavks
     1141 lnritdleev aqflkegiim kdfthpnvls llgiclpdeg splvvlpymk hgdlrnfirn
     1201 ethnptvkdl igfglqvakg mkylaskkfv hrdlaarncm ldekftvkva dfglardvyd
     1261 keyysvhnkt gaklpvkwma leslqtqkft tksdvwsfgv llwelmtrga ppypdvnsfd
     1321 itvyllqgrr llqpeycpdp lyevmlkcwh pkpemrpafs elvskistif stfigehyvh
     1381 vnatyvnvkc iapypsllss qdntdmdvdt
//
LOCUS       XP_009564946            1410 aa            linear   VRT 09-MAR-2023
DEFINITION  hepatocyte growth factor receptor isoform X1 [Cuculus canorus].
ACCESSION   XP_009564946
VERSION     XP_009564946.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566651.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564946.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1410
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1410
                     /product="hepatocyte growth factor receptor isoform X1"
                     /calculated_mol_wt=158205
     Region          53..543
                     /region_name="Sema_MET"
                     /note="The Sema domain, a protein interacting module, of
                     MET (also called hepatocyte growth factor receptor, HGFR);
                     cd11278"
                     /db_xref="CDD:200539"
     Site            order(151..154,175,194,218..220,246,248..251,257..258,314)
                     /site_type="other"
                     /note="HGF binding site [polypeptide binding]"
                     /db_xref="CDD:200539"
     Site            order(329,359..362,397,404,454..455,459,497..498)
                     /site_type="other"
                     /note="InlB binding site [polypeptide binding]"
                     /db_xref="CDD:200539"
     Region          547..589
                     /region_name="PSI"
                     /note="domain found in Plexins, Semaphorins and Integrins;
                     smart00423"
                     /db_xref="CDD:214655"
     Region          591..684
                     /region_name="IPT_plexin_repeat1"
                     /note="First repeat of the IPT domain of Plexins and Cell
                     Surface Receptors (PCSR) . Plexins are involved in the
                     regulation of cell proliferation and of cellular adhesion
                     and repulsion receptors. In general, there are three
                     copies of the IPT domain present...; cd01180"
                     /db_xref="CDD:238585"
     Region          685..769
                     /region_name="IPT_plexin_repeat2"
                     /note="Second repeat of the IPT domain of Plexins and Cell
                     Surface Receptors (PCSR) . Plexins are involved in the
                     regulation of cell proliferation and of cellular adhesion
                     and repulsion receptors. In general, there are three
                     copies of the IPT domain present...; cd01179"
                     /db_xref="CDD:238584"
     Region          771..866
                     /region_name="IPT"
                     /note="Immunoglobulin-like fold, Plexins, Transcription
                     factors (IPT). IPTs are also known as Transcription factor
                     ImmunoGlobin (TIG) domains. They are present in
                     intracellular transcription factors, cell surface
                     receptors (such as plexins and scatter factor...; cl15674"
                     /db_xref="CDD:472823"
     Region          868..947
                     /region_name="IPT_PCSR"
                     /note="IPT domain of Plexins and Cell Surface Receptors
                     (PCSR) and related proteins . This subgroup contains IPT
                     domains of plexins, receptors, like the
                     plasminogen-related growth factor receptors, the
                     hepatocyte growth factor-scatter factors, and the...;
                     cd00603"
                     /db_xref="CDD:238337"
     Region          1111..1372
                     /region_name="PTKc_Met_Ron"
                     /note="Catalytic domain of the Protein Tyrosine Kinases,
                     Met and Ron; cd05058"
                     /db_xref="CDD:270649"
     Site            order(1113..1116,1121,1137,1139,1169,1186..1189,
                     1192..1193,1233,1237..1238,1240,1250..1251,1271..1275,
                     1284,1318)
                     /site_type="active"
                     /db_xref="CDD:270649"
     Site            order(1113..1116,1121,1137,1139,1169,1186..1189,
                     1192..1193,1237..1238,1240,1250..1251)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270649"
     Site            order(1233,1237,1271..1275,1284,1318)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270649"
     Site            order(1250..1269,1271..1277)
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270649"
     CDS             1..1410
                     /gene="MET"
                     /coded_by="XM_009566651.2:52..4284"
                     /db_xref="GeneID:104064326"
ORIGIN      
        1 mftdhtlqeq kaslwqelrv enkikiltmk pftayssvfi vflfallqrs hgqckeaakk
       61 semnlsvkyd lpnfiaetli qnvvlynrhv yigavnkiyv lnetlhnisv yktgpvlenp
      121 dcapcedckd kanlsnsvwe dnvnmallle tyyddqlisc gsvskgvchr hiiqpdnpad
      181 iesevhcmys prvdgeadnc pdcvvstlgt kvlvtekdrf vnffvgntva stfqpphvlh
      241 sisvrrlket qdgfefltdq syidilpqfr dsypiryvha fendhfvyfl tvqresldsq
      301 afhtriirfc tldsemrsym emplecifte krrkrsirke vfnilqaayv skpgaalaye
      361 mglglnddil ygvfaqskpd sseptnrsav cavsvrtine ffnkivdkqn mkclqhfygk
      421 eskyclnraf srnasycraq ddeyrlevtt plqrvdlfmg qfnsvlltsi svftkgnltv
      481 anlgtsegrf mqivvsrsep taphvsfqld shpvspqvvv ensladdgyt lvvtgrkvtk
      541 iplqgpgchh fgscsqclla ppfmqcgwcs qrclrstecp dstwtqdtcl prvyeilpss
      601 apleggtklt lcgwdfgfsk ynrfelknti vhiggqical eakssnknkl ectvpaaknp
      661 sfnisssisv gygktvfntf syvnpvitsi sptygpksgg tlltvagkyl nsgksrkifv
      721 gekpctlksv santvecytp aqripqeyrv rvgideaird ssshftyred pvvlkihpak
      781 sflsggstit aqginlnsvc fpqmvitvpk lgmnfsvacn hrssseiicc ttpslkafnl
      841 qppfvtkvff ifdgvsslyf dfdyvnnpvf khfekplfis rgnqnvleik gnyidseavk
      901 gevlkvgnks cenlllqses ilctvpsdll kssselniew kqevlstvig kvlirqeqnf
      961 tgliagvvst svliliflvf flwrrkkkqi kdlgsdlvry dgrvhtphld rlvsarsvsp
     1021 ttemvssesv dyrstfledq fpsmsqngsc rpaqyphsdl spilssgdsd laspllqtnv
     1081 hidisalnpd lvkevqhvvi gadslivhfs evigrghfgc vyhgtlldnd grkihcavks
     1141 lnritdleev aqflkegiim kdfthpnvls llgiclpdeg splvvlpymk hgdlrnfirn
     1201 ethnptvkdl igfglqvakg mkylaskkfv hrdlaarncm ldekftvkva dfglardvyd
     1261 keyysvhnkt gaklpvkwma leslqtqkft tksdvwsfgv llwelmtrga ppypdvnsfd
     1321 itvyllqgrr llqpeycpdp lyevmlkcwh pkpemrpafs elvskistif stfigehyvh
     1381 vnatyvnvkc iapypsllss qdntdmdvdt
//
LOCUS       XP_053938801            1402 aa            linear   VRT 09-MAR-2023
DEFINITION  hepatocyte growth factor receptor isoform X2 [Cuculus canorus].
ACCESSION   XP_053938801
VERSION     XP_053938801.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082826.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1402
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1402
                     /product="hepatocyte growth factor receptor isoform X2"
                     /calculated_mol_wt=156981
     Region          45..535
                     /region_name="Sema_MET"
                     /note="The Sema domain, a protein interacting module, of
                     MET (also called hepatocyte growth factor receptor, HGFR);
                     cd11278"
                     /db_xref="CDD:200539"
     Site            order(143..146,167,186,210..212,238,240..243,249..250,306)
                     /site_type="other"
                     /note="HGF binding site [polypeptide binding]"
                     /db_xref="CDD:200539"
     Site            order(321,351..354,389,396,446..447,451,489..490)
                     /site_type="other"
                     /note="InlB binding site [polypeptide binding]"
                     /db_xref="CDD:200539"
     Region          539..581
                     /region_name="PSI"
                     /note="domain found in Plexins, Semaphorins and Integrins;
                     smart00423"
                     /db_xref="CDD:214655"
     Region          583..676
                     /region_name="IPT_plexin_repeat1"
                     /note="First repeat of the IPT domain of Plexins and Cell
                     Surface Receptors (PCSR) . Plexins are involved in the
                     regulation of cell proliferation and of cellular adhesion
                     and repulsion receptors. In general, there are three
                     copies of the IPT domain present...; cd01180"
                     /db_xref="CDD:238585"
     Region          677..761
                     /region_name="IPT_plexin_repeat2"
                     /note="Second repeat of the IPT domain of Plexins and Cell
                     Surface Receptors (PCSR) . Plexins are involved in the
                     regulation of cell proliferation and of cellular adhesion
                     and repulsion receptors. In general, there are three
                     copies of the IPT domain present...; cd01179"
                     /db_xref="CDD:238584"
     Region          763..858
                     /region_name="IPT"
                     /note="Immunoglobulin-like fold, Plexins, Transcription
                     factors (IPT). IPTs are also known as Transcription factor
                     ImmunoGlobin (TIG) domains. They are present in
                     intracellular transcription factors, cell surface
                     receptors (such as plexins and scatter factor...; cl15674"
                     /db_xref="CDD:472823"
     Region          860..939
                     /region_name="IPT_PCSR"
                     /note="IPT domain of Plexins and Cell Surface Receptors
                     (PCSR) and related proteins . This subgroup contains IPT
                     domains of plexins, receptors, like the
                     plasminogen-related growth factor receptors, the
                     hepatocyte growth factor-scatter factors, and the...;
                     cd00603"
                     /db_xref="CDD:238337"
     Region          1103..1364
                     /region_name="PTKc_Met_Ron"
                     /note="Catalytic domain of the Protein Tyrosine Kinases,
                     Met and Ron; cd05058"
                     /db_xref="CDD:270649"
     Site            order(1105..1108,1113,1129,1131,1161,1178..1181,
                     1184..1185,1225,1229..1230,1232,1242..1243,1263..1267,
                     1276,1310)
                     /site_type="active"
                     /db_xref="CDD:270649"
     Site            order(1105..1108,1113,1129,1131,1161,1178..1181,
                     1184..1185,1229..1230,1232,1242..1243)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270649"
     Site            order(1225,1229,1263..1267,1276,1310)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270649"
     Site            order(1242..1261,1263..1269)
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270649"
     CDS             1..1402
                     /gene="MET"
                     /coded_by="XM_054082826.1:15..4223"
                     /db_xref="GeneID:104064326"
ORIGIN      
        1 mtctasltpe gikkkikilt mkpftayssv fivflfallq rshgqckeaa kksemnlsvk
       61 ydlpnfiaet liqnvvlynr hvyigavnki yvlnetlhni svyktgpvle npdcapcedc
      121 kdkanlsnsv wednvnmall letyyddqli scgsvskgvc hrhiiqpdnp adiesevhcm
      181 ysprvdgead ncpdcvvstl gtkvlvtekd rfvnffvgnt vastfqpphv lhsisvrrlk
      241 etqdgfeflt dqsyidilpq frdsypiryv hafendhfvy fltvqresld sqafhtriir
      301 fctldsemrs ymemplecif tekrrkrsir kevfnilqaa yvskpgaala yemglglndd
      361 ilygvfaqsk pdsseptnrs avcavsvrti neffnkivdk qnmkclqhfy gkeskyclnr
      421 afsrnasycr aqddeyrlev ttplqrvdlf mgqfnsvllt sisvftkgnl tvanlgtseg
      481 rfmqivvsrs eptaphvsfq ldshpvspqv vvensladdg ytlvvtgrkv tkiplqgpgc
      541 hhfgscsqcl lappfmqcgw csqrclrste cpdstwtqdt clprvyeilp ssapleggtk
      601 ltlcgwdfgf skynrfelkn tivhiggqic aleakssnkn klectvpaak npsfnisssi
      661 svgygktvfn tfsyvnpvit sisptygpks ggtlltvagk ylnsgksrki fvgekpctlk
      721 svsantvecy tpaqripqey rvrvgideai rdssshftyr edpvvlkihp aksflsggst
      781 itaqginlns vcfpqmvitv pklgmnfsva cnhrssseii ccttpslkaf nlqppfvtkv
      841 ffifdgvssl yfdfdyvnnp vfkhfekplf isrgnqnvle ikgnyidsea vkgevlkvgn
      901 kscenlllqs esilctvpsd llkssselni ewkqevlstv igkvlirqeq nftgliagvv
      961 stsvlilifl vfflwrrkkk qikdlgsdlv rydgrvhtph ldrlvsarsv spttemvsse
     1021 svdyrstfle dqfpsmsqng scrpaqyphs dlspilssgd sdlaspllqt nvhidisaln
     1081 pdlvkevqhv vigadslivh fsevigrghf gcvyhgtlld ndgrkihcav kslnritdle
     1141 evaqflkegi imkdfthpnv lsllgiclpd egsplvvlpy mkhgdlrnfi rnethnptvk
     1201 dligfglqva kgmkylaskk fvhrdlaarn cmldekftvk vadfglardv ydkeyysvhn
     1261 ktgaklpvkw maleslqtqk fttksdvwsf gvllwelmtr gappypdvns fditvyllqg
     1321 rrllqpeycp dplyevmlkc whpkpemrpa fselvskist ifstfigehy vhvnatyvnv
     1381 kciapypsll ssqdntdmdv dt
//
LOCUS       XP_053938814             458 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-N-acetylgalactosaminidase isoform X1 [Cuculus canorus].
ACCESSION   XP_053938814
VERSION     XP_053938814.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082839.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..458
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..458
                     /product="alpha-N-acetylgalactosaminidase isoform X1"
                     /calculated_mol_wt=51223
     Region          28..312
                     /region_name="AmyAc_family"
                     /note="Alpha amylase catalytic domain family; cl38930"
                     /db_xref="CDD:476817"
     Site            order(36,81..82,123,158,160,192,217,221)
                     /site_type="active"
                     /db_xref="CDD:269893"
     Region          315..398
                     /region_name="Melibiase_2_C"
                     /note="Alpha galactosidase A C-terminal beta sandwich
                     domain; pfam17450"
                     /db_xref="CDD:407508"
     CDS             1..458
                     /gene="NAGA"
                     /coded_by="XM_054082839.1:34..1410"
                     /db_xref="GeneID:104055484"
ORIGIN      
        1 maaavtsvaa aalltalsaa lenglartpp mgwlawerfr cnvdcggdpr hcisetlffe
       61 madrlaedgw relgykyini ddcwsarqrd aegrlipdpe rfprgikala dyvharglkl
      121 giygdlgtlt cggypgttld lverdaqtfa ewgvdmlkld gcyssaeeqa egypqmaral
      181 natgrpivys cswpayqggl ppkvnytile evcnlwrnyd diqdswdsvl sildwffenq
      241 dvlqpaagpg hwndpdmlii gnfglsyeqs rsqmalwtvm aapllmstdl rtispsakei
      301 lqnrlmiqin qdplgiqgrr ivkekshiev flrplsqgas alvffsrrtd mpflyttsla
      361 klhfpedavy evqdvysgki isglktgddf svvinpsgvv mwylcptvqp wravrqqapa
      421 hilwrsfrwd taytnhlreg csacedcvvk pqhgeted
//
LOCUS       XP_053938821             428 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-N-acetylgalactosaminidase isoform X2 [Cuculus canorus].
ACCESSION   XP_053938821
VERSION     XP_053938821.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082846.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..428
                     /product="alpha-N-acetylgalactosaminidase isoform X2"
                     /calculated_mol_wt=47629
     Region          28..312
                     /region_name="AmyAc_family"
                     /note="Alpha amylase catalytic domain family; cl38930"
                     /db_xref="CDD:476817"
     Site            order(36,81..82,123,158,160,192,217,221)
                     /site_type="active"
                     /db_xref="CDD:269893"
     Region          315..398
                     /region_name="Melibiase_2_C"
                     /note="Alpha galactosidase A C-terminal beta sandwich
                     domain; pfam17450"
                     /db_xref="CDD:407508"
     CDS             1..428
                     /gene="NAGA"
                     /coded_by="XM_054082846.1:34..1320"
                     /db_xref="GeneID:104055484"
ORIGIN      
        1 maaavtsvaa aalltalsaa lenglartpp mgwlawerfr cnvdcggdpr hcisetlffe
       61 madrlaedgw relgykyini ddcwsarqrd aegrlipdpe rfprgikala dyvharglkl
      121 giygdlgtlt cggypgttld lverdaqtfa ewgvdmlkld gcyssaeeqa egypqmaral
      181 natgrpivys cswpayqggl ppkvnytile evcnlwrnyd diqdswdsvl sildwffenq
      241 dvlqpaagpg hwndpdmlii gnfglsyeqs rsqmalwtvm aapllmstdl rtispsakei
      301 lqnrlmiqin qdplgiqgrr ivkekshiev flrplsqgas alvffsrrtd mpflyttsla
      361 klhfpedavy evqdvysgki isglktgddf svvinpsgvv mwylcptvqp wravrqqapg
      421 egfhpvll
//
LOCUS       XP_009554906             283 aa            linear   VRT 09-MAR-2023
DEFINITION  postacrosomal sheath WW domain-binding protein [Cuculus canorus].
ACCESSION   XP_009554906
VERSION     XP_009554906.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556611.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554906.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..283
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..283
                     /product="postacrosomal sheath WW domain-binding protein"
                     /calculated_mol_wt=29905
     Region          30..131
                     /region_name="PH-GRAM_WBP2"
                     /note="WW binding protein 2 (WB2) Pleckstrin
                     Homology-Glucosyltransferases, Rab-like GTPase activators
                     and Myotubularins (PH-GRAM) domain; cd13214"
                     /db_xref="CDD:275401"
     CDS             1..283
                     /gene="WBP2NL"
                     /coded_by="XM_009556611.2:99..950"
                     /db_xref="GeneID:104055485"
ORIGIN      
        1 malnrfhsle grvvipkees vlkqckdvel sfsdvtgnpe afkgtkkgtl yltpyrmifv
       61 skgkdpmqsf mmpfylvkgc sieqpvfsan yikgqiqaea gggwegqgtf kltfnsggai
      121 efgqlmfkva snasssvplq npgygytpvp ggyapapggy sptpggyaap pppngpypya
      181 pppmnaygpa pqpmgypyaq tpgiyptlpn mnpvyvpppp pysgpspagp sapsawvglg
      241 mpghsgtmea assayynpan phnaympmdq pppyappedk knn
//
LOCUS       XP_053938843             331 aa            linear   VRT 09-MAR-2023
DEFINITION  cysteine and histidine-rich domain-containing protein 1 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053938843
VERSION     XP_053938843.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082868.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..331
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..331
                     /product="cysteine and histidine-rich domain-containing
                     protein 1 isoform X1"
                     /calculated_mol_wt=37351
     Region          3..64
                     /region_name="CHORD"
                     /note="pfam04968"
                     /db_xref="CDD:461502"
     Region          155..216
                     /region_name="CHORD"
                     /note="pfam04968"
                     /db_xref="CDD:461502"
     Region          230..316
                     /region_name="p23_melusin_like"
                     /note="p23_like domain similar to the C-terminal (tail)
                     domain of vertebrate Melusin and related proteins.
                     Melusin's tail domain interacts with the cytoplasmic
                     domain of beta1-A and beta1-D isoforms of beta1 integrin,
                     it does not bind other integrin beta...; cd06488"
                     /db_xref="CDD:107238"
     CDS             1..331
                     /gene="CHORDC1"
                     /coded_by="XM_054082868.1:241..1236"
                     /db_xref="GeneID:104064096"
ORIGIN      
        1 msllcynrgc gqrfdpetnt edsctyhpgv pvfhdalkgw scckrrttdf sdflsivgct
       61 kgrhnsekpp epvkpevktt serkelaelk pkfqehiika pkpletiqrp spdepmtnlq
      121 lkvsaslkqa ldklklssen eekkeedsde ikigtackna gcsktyegph steevciyhs
      181 gvpifhegmk ywscckrkts dfntflaqeg ctrgthvwtk kdagkkvvpc rhdwhqtgge
      241 vtisvyakns vpdlsyvean stmlnihivf egekefhrsv klwgvidvkr syvnmtatki
      301 eltmrkaepl lwaslelpvs daqqkkenld q
//
LOCUS       XP_053938851             298 aa            linear   VRT 09-MAR-2023
DEFINITION  cysteine and histidine-rich domain-containing protein 1 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053938851
VERSION     XP_053938851.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082876.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..298
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..298
                     /product="cysteine and histidine-rich domain-containing
                     protein 1 isoform X2"
                     /calculated_mol_wt=33602
     Region          <6..31
                     /region_name="CHORD"
                     /note="pfam04968"
                     /db_xref="CDD:461502"
     Region          122..183
                     /region_name="CHORD"
                     /note="pfam04968"
                     /db_xref="CDD:461502"
     Region          197..283
                     /region_name="p23_melusin_like"
                     /note="p23_like domain similar to the C-terminal (tail)
                     domain of vertebrate Melusin and related proteins.
                     Melusin's tail domain interacts with the cytoplasmic
                     domain of beta1-A and beta1-D isoforms of beta1 integrin,
                     it does not bind other integrin beta...; cd06488"
                     /db_xref="CDD:107238"
     CDS             1..298
                     /gene="CHORDC1"
                     /coded_by="XM_054082876.1:463..1359"
                     /db_xref="GeneID:104064096"
ORIGIN      
        1 mscksgwscc krrttdfsdf lsivgctkgr hnsekppepv kpevkttser kelaelkpkf
       61 qehiikapkp letiqrpspd epmtnlqlkv saslkqaldk lklsseneek keedsdeiki
      121 gtacknagcs ktyegphste evciyhsgvp ifhegmkyws cckrktsdfn tflaqegctr
      181 gthvwtkkda gkkvvpcrhd whqtggevti svyaknsvpd lsyveanstm lnihivfege
      241 kefhrsvklw gvidvkrsyv nmtatkielt mrkaepllwa slelpvsdaq qkkenldq
//
LOCUS       XP_009559185             173 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-crystallin A chain [Cuculus canorus].
ACCESSION   XP_009559185
VERSION     XP_009559185.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560890.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..173
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..173
                     /product="alpha-crystallin A chain"
                     /calculated_mol_wt=19683
     Region          1..54
                     /region_name="Crystallin"
                     /note="Alpha crystallin A chain, N terminal; pfam00525"
                     /db_xref="CDD:425732"
     Region          60..145
                     /region_name="ACD_alphaA-crystallin_HspB4"
                     /note="Alpha-crystallin domain found in the small heat
                     shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa).
                     sHsps are molecular chaperones that suppress protein
                     aggregation and protect against cell stress, and are
                     generally active as large oligomers...; cd06497"
                     /db_xref="CDD:107245"
     Site            order(64..68,74,76,78..79,116,137..138)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:107245"
     CDS             1..173
                     /gene="CRYAA"
                     /coded_by="XM_009560890.2:83..604"
                     /db_xref="GeneID:104059244"
ORIGIN      
        1 mditiqhpwf kralgplips rlfdqffgeg lleydllplf sstispyyrq slfrsvlesg
       61 isevrsdrdk ftimldvkhf spedlsvkii ddfveihgkh serqddhgyi srefhrryrl
      121 panvdqaait cslsndgmlt fsgpkvpsnm dtshverpip vsreekptsa pss
//
LOCUS       XP_053938869             488 aa            linear   VRT 09-MAR-2023
DEFINITION  integrin beta-like protein 1 [Cuculus canorus].
ACCESSION   XP_053938869
VERSION     XP_053938869.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082894.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..488
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..488
                     /product="integrin beta-like protein 1"
                     /calculated_mol_wt=52977
     CDS             1..488
                     /gene="ITGBL1"
                     /coded_by="XM_054082894.1:378..1844"
                     /db_xref="GeneID:104062966"
ORIGIN      
        1 mysrglpglv vlllvtllpa ghpappsgtp alrnspscrl sqteselrcq vpggklcsgr
       61 gscecgvcic qvtesgkyyg plcqchdwmc evydgkicag hgkcdcgkck cdegwygeac
      121 qypttcnltr kksnemckns qdiicsgagt chcgrckcan segnglvygk fcecddreci
      181 ddeteeictg hgkcycgncy ceagwhgdkc efqcditpwe ikkrctspdg kicsnrgtcv
      241 cgectchdvd ptgdwgdihg dtcecdernc ksvydrysdd fcsghgqcnc grcdckegwt
      301 gkkcehphsc plsieesake cqgdsnlpcs grgrcecgqc tcfppgdnrv hgkncecddr
      361 qcenvdgdvc gghgicscgr cicqdgwfgk lcqhsrecnm teedsrslce sadgvlcsgk
      421 gschcgkcic spqewyisge fcecddrdcd khdglictgn gvcscgncec wegwngnace
      481 iwlgreyp
//
LOCUS       XP_009563404             253 aa            linear   VRT 09-MAR-2023
DEFINITION  fibroblast growth factor 14 isoform X1 [Cuculus canorus].
ACCESSION   XP_009563404
VERSION     XP_009563404.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565109.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..253
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..253
                     /product="fibroblast growth factor 14 isoform X1"
                     /calculated_mol_wt=28435
     Region          70..214
                     /region_name="beta-trefoil_FGF14"
                     /note="FGF domain, beta-trefoil fold, found in fibroblast
                     growth factor 14 (FGF14) and similar proteins; cd23330"
                     /db_xref="CDD:467016"
     CDS             1..253
                     /gene="FGF14"
                     /coded_by="XM_009565109.2:496..1257"
                     /db_xref="GeneID:104062967"
ORIGIN      
        1 miklvplfrr tglnlllcnh kdlfflrvyk lldcfspksm wflwnifskg shmlqclcgk
       61 slkknknqtd pqlkgivtrl ycrqgyylqm hpdgsldgtk ddssnstlfn lipvglrvva
      121 iqgvktglyi alngegflyt selftpeckf kesvfenyyv iyssmlyrqq esgrawflgl
      181 nkegqvmkgn rvkktkpaah flpkplevam yrepslhdig etvpkagvtp skstsasaim
      241 nggkpvvnks ktt
//
LOCUS       XP_053938879             248 aa            linear   VRT 09-MAR-2023
DEFINITION  fibroblast growth factor 14 isoform X2 [Cuculus canorus].
ACCESSION   XP_053938879
VERSION     XP_053938879.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082904.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..248
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..248
                     /product="fibroblast growth factor 14 isoform X2"
                     /calculated_mol_wt=27685
     Region          65..209
                     /region_name="beta-trefoil_FGF14"
                     /note="FGF domain, beta-trefoil fold, found in fibroblast
                     growth factor 14 (FGF14) and similar proteins; cd23330"
                     /db_xref="CDD:467016"
     CDS             1..248
                     /gene="FGF14"
                     /coded_by="XM_054082904.1:340..1086"
                     /db_xref="GeneID:104062967"
ORIGIN      
        1 maaaiasgli rqkrqareqh wdrpsasrrr nspsknrglc ngnlvdifsk vrifglkkrr
       61 lrrqdpqlkg ivtrlycrqg yylqmhpdgs ldgtkddssn stlfnlipvg lrvvaiqgvk
      121 tglyialnge gflytselft peckfkesvf enyyviyssm lyrqqesgra wflglnkegq
      181 vmkgnrvkkt kpaahflpkp levamyreps lhdigetvpk agvtpsksts asaimnggkp
      241 vvnksktt
//
LOCUS       XP_053938887             216 aa            linear   VRT 09-MAR-2023
DEFINITION  fibroblast growth factor 14 isoform X3 [Cuculus canorus].
ACCESSION   XP_053938887
VERSION     XP_053938887.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082912.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..216
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..216
                     /product="fibroblast growth factor 14 isoform X3"
                     /calculated_mol_wt=24264
     Region          63..182
                     /region_name="beta-trefoil_FGF"
                     /note="FGF domain, beta-trefoil fold, found in acidic and
                     basic fibroblast growth factor (FGF) superfamily; cl00060"
                     /db_xref="CDD:469595"
     CDS             1..216
                     /gene="FGF14"
                     /coded_by="XM_054082912.1:497..1147"
                     /db_xref="GeneID:104062967"
ORIGIN      
        1 miklvplfrr tglnlllcnh kdlfflrvyk lldcfspksm wflwnifskg shmlqclcgk
       61 slkknknqta lfnlipvglr vvaiqgvktg lyialngegf lytselftpe ckfkesvfen
      121 yyviyssmly rqqesgrawf lglnkegqvm kgnrvkktkp aahflpkple vamyrepslh
      181 digetvpkag vtpskstsas aimnggkpvv nksktt
//
LOCUS       XP_053938895             205 aa            linear   VRT 09-MAR-2023
DEFINITION  fibroblast growth factor 14 isoform X4 [Cuculus canorus].
ACCESSION   XP_053938895
VERSION     XP_053938895.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082920.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..205
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..205
                     /product="fibroblast growth factor 14 isoform X4"
                     /calculated_mol_wt=22591
     Region          22..166
                     /region_name="beta-trefoil_FGF14"
                     /note="FGF domain, beta-trefoil fold, found in fibroblast
                     growth factor 14 (FGF14) and similar proteins; cd23330"
                     /db_xref="CDD:467016"
     CDS             1..205
                     /gene="FGF14"
                     /coded_by="XM_054082920.1:206..823"
                     /db_xref="GeneID:104062967"
ORIGIN      
        1 mhkvrgrtll kgkesmpgns hdpqlkgivt rlycrqgyyl qmhpdgsldg tkddssnstl
       61 fnlipvglrv vaiqgvktgl yialngegfl ytselftpec kfkesvfeny yviyssmlyr
      121 qqesgrawfl glnkegqvmk gnrvkktkpa ahflpkplev amyrepslhd igetvpkagv
      181 tpskstsasa imnggkpvvn ksktt
//
LOCUS       XP_053938905             198 aa            linear   VRT 09-MAR-2023
DEFINITION  fibroblast growth factor 14 isoform X5 [Cuculus canorus].
ACCESSION   XP_053938905
VERSION     XP_053938905.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082930.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..198
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..198
                     /product="fibroblast growth factor 14 isoform X5"
                     /calculated_mol_wt=21681
     Region          15..159
                     /region_name="beta-trefoil_FGF14"
                     /note="FGF domain, beta-trefoil fold, found in fibroblast
                     growth factor 14 (FGF14) and similar proteins; cd23330"
                     /db_xref="CDD:467016"
     CDS             1..198
                     /gene="FGF14"
                     /coded_by="XM_054082930.1:268..864"
                     /db_xref="GeneID:104062967"
ORIGIN      
        1 mggrrgtttt ntnsdpqlkg ivtrlycrqg yylqmhpdgs ldgtkddssn stlfnlipvg
       61 lrvvaiqgvk tglyialnge gflytselft peckfkesvf enyyviyssm lyrqqesgra
      121 wflglnkegq vmkgnrvkkt kpaahflpkp levamyreps lhdigetvpk agvtpsksts
      181 asaimnggkp vvnksktt
//
LOCUS       XP_053938918             656 aa            linear   VRT 09-MAR-2023
DEFINITION  pseudouridylate synthase 7 homolog isoform X1 [Cuculus canorus].
ACCESSION   XP_053938918
VERSION     XP_053938918.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082943.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..656
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..656
                     /product="pseudouridylate synthase 7 homolog isoform X1"
                     /calculated_mol_wt=74664
     Region          114..638
                     /region_name="PseudoU_synth_ScPUS7"
                     /note="Pseudouridine synthase, TruD family; cd02576"
                     /db_xref="CDD:211341"
     Site            order(286..289,631)
                     /site_type="active"
                     /note="probable active site [active]"
                     /db_xref="CDD:211341"
     CDS             1..656
                     /gene="PUS7"
                     /coded_by="XM_054082943.1:332..2302"
                     /db_xref="GeneID:104056072"
ORIGIN      
        1 meavevnnvs lkrprseddv anadeikrqk iseksktgnd sgqsvetvpe qpdkplledt
       61 kneiipnees eeqedeeled sdedgdpesf admmkhglte sdvgitkfvs shkgfsgilk
      121 erysdfvvhe igkdgrvihl ddfsvpvdde dpseetftvl sdedkqrlee lqllknkets
      181 vaieviedtk ekrtvihqav kslfpgletk tedrdgkkyi iayhaagkka lakvrtatdp
      241 rkhswpksrg sychfvlyke nkdtmdainv lskflrvkpn ifsymgtkdk raitvqeiav
      301 lritaqrlah lnkclmnfkl gnfsyknhpl klgelqgnhf tvvlrnitgt ddqieqamhs
      361 lreigfinyy gmqrfgttav ptyqigrail qnnwnevmdl ilkprpgaek gylvkcreew
      421 aktkdpaaal kklpvkrcve gqllrgllky gmkniisafg iiprnnrlmy ihsyqsyvwn
      481 nmvskrieey glravpgdlt lkgatavhie egdvdnytih dvvmplpgfd viypkhkige
      541 aykemlvadn ldinnmrhkv rdyslsgayr kiiirpqnvt wevvayddpr iplfttdldk
      601 leakplpvlp tdgkfralkm efslppstya tmairevlkm dtsiknqtql nttwlr
//
LOCUS       XP_053938928             656 aa            linear   VRT 09-MAR-2023
DEFINITION  pseudouridylate synthase 7 homolog isoform X1 [Cuculus canorus].
ACCESSION   XP_053938928
VERSION     XP_053938928.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082953.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..656
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..656
                     /product="pseudouridylate synthase 7 homolog isoform X1"
                     /calculated_mol_wt=74664
     Region          114..638
                     /region_name="PseudoU_synth_ScPUS7"
                     /note="Pseudouridine synthase, TruD family; cd02576"
                     /db_xref="CDD:211341"
     Site            order(286..289,631)
                     /site_type="active"
                     /note="probable active site [active]"
                     /db_xref="CDD:211341"
     CDS             1..656
                     /gene="PUS7"
                     /coded_by="XM_054082953.1:337..2307"
                     /db_xref="GeneID:104056072"
ORIGIN      
        1 meavevnnvs lkrprseddv anadeikrqk iseksktgnd sgqsvetvpe qpdkplledt
       61 kneiipnees eeqedeeled sdedgdpesf admmkhglte sdvgitkfvs shkgfsgilk
      121 erysdfvvhe igkdgrvihl ddfsvpvdde dpseetftvl sdedkqrlee lqllknkets
      181 vaieviedtk ekrtvihqav kslfpgletk tedrdgkkyi iayhaagkka lakvrtatdp
      241 rkhswpksrg sychfvlyke nkdtmdainv lskflrvkpn ifsymgtkdk raitvqeiav
      301 lritaqrlah lnkclmnfkl gnfsyknhpl klgelqgnhf tvvlrnitgt ddqieqamhs
      361 lreigfinyy gmqrfgttav ptyqigrail qnnwnevmdl ilkprpgaek gylvkcreew
      421 aktkdpaaal kklpvkrcve gqllrgllky gmkniisafg iiprnnrlmy ihsyqsyvwn
      481 nmvskrieey glravpgdlt lkgatavhie egdvdnytih dvvmplpgfd viypkhkige
      541 aykemlvadn ldinnmrhkv rdyslsgayr kiiirpqnvt wevvayddpr iplfttdldk
      601 leakplpvlp tdgkfralkm efslppstya tmairevlkm dtsiknqtql nttwlr
//
LOCUS       XP_053938934             656 aa            linear   VRT 09-MAR-2023
DEFINITION  pseudouridylate synthase 7 homolog isoform X1 [Cuculus canorus].
ACCESSION   XP_053938934
VERSION     XP_053938934.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082959.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..656
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..656
                     /product="pseudouridylate synthase 7 homolog isoform X1"
                     /calculated_mol_wt=74664
     Region          114..638
                     /region_name="PseudoU_synth_ScPUS7"
                     /note="Pseudouridine synthase, TruD family; cd02576"
                     /db_xref="CDD:211341"
     Site            order(286..289,631)
                     /site_type="active"
                     /note="probable active site [active]"
                     /db_xref="CDD:211341"
     CDS             1..656
                     /gene="PUS7"
                     /coded_by="XM_054082959.1:376..2346"
                     /db_xref="GeneID:104056072"
ORIGIN      
        1 meavevnnvs lkrprseddv anadeikrqk iseksktgnd sgqsvetvpe qpdkplledt
       61 kneiipnees eeqedeeled sdedgdpesf admmkhglte sdvgitkfvs shkgfsgilk
      121 erysdfvvhe igkdgrvihl ddfsvpvdde dpseetftvl sdedkqrlee lqllknkets
      181 vaieviedtk ekrtvihqav kslfpgletk tedrdgkkyi iayhaagkka lakvrtatdp
      241 rkhswpksrg sychfvlyke nkdtmdainv lskflrvkpn ifsymgtkdk raitvqeiav
      301 lritaqrlah lnkclmnfkl gnfsyknhpl klgelqgnhf tvvlrnitgt ddqieqamhs
      361 lreigfinyy gmqrfgttav ptyqigrail qnnwnevmdl ilkprpgaek gylvkcreew
      421 aktkdpaaal kklpvkrcve gqllrgllky gmkniisafg iiprnnrlmy ihsyqsyvwn
      481 nmvskrieey glravpgdlt lkgatavhie egdvdnytih dvvmplpgfd viypkhkige
      541 aykemlvadn ldinnmrhkv rdyslsgayr kiiirpqnvt wevvayddpr iplfttdldk
      601 leakplpvlp tdgkfralkm efslppstya tmairevlkm dtsiknqtql nttwlr
//
LOCUS       XP_053938944             650 aa            linear   VRT 09-MAR-2023
DEFINITION  pseudouridylate synthase 7 homolog isoform X2 [Cuculus canorus].
ACCESSION   XP_053938944
VERSION     XP_053938944.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082969.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..650
                     /product="pseudouridylate synthase 7 homolog isoform X2"
                     /calculated_mol_wt=74007
     Region          114..632
                     /region_name="PseudoU_synth_ScPUS7"
                     /note="Pseudouridine synthase, TruD family; cd02576"
                     /db_xref="CDD:211341"
     Site            order(280..283,625)
                     /site_type="active"
                     /note="probable active site [active]"
                     /db_xref="CDD:211341"
     CDS             1..650
                     /gene="PUS7"
                     /coded_by="XM_054082969.1:332..2284"
                     /db_xref="GeneID:104056072"
ORIGIN      
        1 meavevnnvs lkrprseddv anadeikrqk iseksktgnd sgqsvetvpe qpdkplledt
       61 kneiipnees eeqedeeled sdedgdpesf admmkhglte sdvgitkfvs shkgfsgilk
      121 erysdfvvhe igkdgrvihl ddfsvpvdde dpseetftvl sdedkqrlee lqllknkets
      181 vaieviedtk ekrtvihqav kslfpgletk tedrdgkkyi iayhaagkka lanprkhswp
      241 ksrgsychfv lykenkdtmd ainvlskflr vkpnifsymg tkdkraitvq eiavlritaq
      301 rlahlnkclm nfklgnfsyk nhplklgelq gnhftvvlrn itgtddqieq amhslreigf
      361 inyygmqrfg ttavptyqig railqnnwne vmdlilkprp gaekgylvkc reewaktkdp
      421 aaalkklpvk rcvegqllrg llkygmknii safgiiprnn rlmyihsyqs yvwnnmvskr
      481 ieeyglravp gdltlkgata vhieegdvdn ytihdvvmpl pgfdviypkh kigeaykeml
      541 vadnldinnm rhkvrdysls gayrkiiirp qnvtwevvay ddpriplftt dldkleakpl
      601 pvlptdgkfr alkmefslpp styatmaire vlkmdtsikn qtqlnttwlr
//
LOCUS       XP_053938966            1057 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-1,4-N-acetylgalactosaminyltransferase 3 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053938966
VERSION     XP_053938966.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082991.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1057
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1057
                     /product="beta-1,4-N-acetylgalactosaminyltransferase 3
                     isoform X1"
                     /calculated_mol_wt=120097
     Region          125..268
                     /region_name="PA14"
                     /note="domain in bacterial beta-glucosidases other
                     glycosidases, glycosyltransferases, proteases, amidases,
                     yeast adhesins, and bacterial toxins; smart00758"
                     /db_xref="CDD:214807"
     Region          <733..1040
                     /region_name="CHGN"
                     /note="Chondroitin N-acetylgalactosaminyltransferase;
                     pfam05679"
                     /db_xref="CDD:461712"
     CDS             1..1057
                     /gene="B4GALNT3"
                     /coded_by="XM_054082991.1:35..3208"
                     /db_xref="GeneID:104055923"
ORIGIN      
        1 mrgrllarlr rrrlrrlllg lgalalglga aylqllavpg hgdtpdqgye swrelakala
       61 dknvpggnps lqlyylqklr hqkqelqrgr rnrsnyaavd slvpwmpefq gqanlhvfed
      121 wcgssteqlr knlhfplfph trttlkklav spkwtnyglr ifgylhpftd gefqfaiaad
      181 dnaefwlssd ektsglqlla svgktgkewt apgefgkfhs qqskmvrlsa agryyfevlh
      241 kqddrgtdhv evawrlndpe akfkvidsqc lslfanetll kmdevghipq tlashtsraa
      301 dsagskahpa dmlkpdprdt lykvpllsks hvrralpdcp ykpsylvngf plqryqglqf
      361 vhlsfvypnd ysrlshmekd nkcfyqenpy ylerfgfyky mkmdrpeksl dsgekteqpg
      421 sqkddledlq yteqdlests pvehpgpgra epagnavsrv vgsdsvhedy sllerrrlls
      481 viggdigegl qrrrtkrsgv ksamlvsanq slshvdlkgp imkrpplkag ikdnsrsplq
      541 rtravqgtap vkkanppsrt msqkqqplgg prnsrvtipk gvksqgdlga akdglqpagt
      601 vppgrgdpvs gkadrhtmsa aspgqrpvlt ewlnqvesyi aeqkvanggd mgeqvaspmk
      661 gksgpvaaed eeeeevdgep eeeneedfdy vpvfdqvvnw eqtfstsnld fhilrtdwid
      721 lkcntsgnll lrerealeit rvflkklnqr skgrfqlqri vnvekrqdrm rgsryllele
      781 lleqgerlvr fseyvfaqgw qgiggdeeee rkmrnlawgr rrhlmavane pelcwpqgfs
      841 wnhhavvhfv vpvknqarwv lqfisdmeel frvtkdpyfn iiitdyssdd mdvekalkrs
      901 alhsyrylkl sgnfersagl qagidlvtdp hsiiflcdlh ihfpagvids irkhcvegkm
      961 afapmvmrlh cgmspqwpdg ywevngfgll giyksdldki ggmntkefrd rwggedwell
     1021 drilqaglev erlslrnffh wfhskrgmwn rrqlktl
//
LOCUS       XP_053938974             952 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-1,4-N-acetylgalactosaminyltransferase 3 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053938974
VERSION     XP_053938974.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054082999.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..952
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..952
                     /product="beta-1,4-N-acetylgalactosaminyltransferase 3
                     isoform X2"
                     /calculated_mol_wt=108216
     Region          20..163
                     /region_name="PA14"
                     /note="domain in bacterial beta-glucosidases other
                     glycosidases, glycosyltransferases, proteases, amidases,
                     yeast adhesins, and bacterial toxins; smart00758"
                     /db_xref="CDD:214807"
     Region          <628..935
                     /region_name="CHGN"
                     /note="Chondroitin N-acetylgalactosaminyltransferase;
                     pfam05679"
                     /db_xref="CDD:461712"
     CDS             1..952
                     /gene="B4GALNT3"
                     /coded_by="XM_054082999.1:476..3334"
                     /db_xref="GeneID:104055923"
ORIGIN      
        1 mpefqgqanl hvfedwcgss teqlrknlhf plfphtrttl kklavspkwt nyglrifgyl
       61 hpftdgefqf aiaaddnaef wlssdektsg lqllasvgkt gkewtapgef gkfhsqqskm
      121 vrlsaagryy fevlhkqddr gtdhvevawr lndpeakfkv idsqclslfa netllkmdev
      181 ghipqtlash tsraadsags kahpadmlkp dprdtlykvp llskshvrra lpdcpykpsy
      241 lvngfplqry qglqfvhlsf vypndysrls hmekdnkcfy qenpyylerf gfykymkmdr
      301 peksldsgek teqpgsqkdd ledlqyteqd lestspvehp gpgraepagn avsrvvgsds
      361 vhedysller rrllsviggd igeglqrrrt krsgvksaml vsanqslshv dlkgpimkrp
      421 plkagikdns rsplqrtrav qgtapvkkan ppsrtmsqkq qplggprnsr vtipkgvksq
      481 gdlgaakdgl qpagtvppgr gdpvsgkadr htmsaaspgq rpvltewlnq vesyiaeqkv
      541 anggdmgeqv aspmkgksgp vaaedeeeee vdgepeeene edfdyvpvfd qvvnweqtfs
      601 tsnldfhilr tdwidlkcnt sgnlllrere aleitrvflk klnqrskgrf qlqrivnvek
      661 rqdrmrgsry llelelleqg erlvrfseyv faqgwqgigg deeeerkmrn lawgrrrhlm
      721 avanepelcw pqgfswnhha vvhfvvpvkn qarwvlqfis dmeelfrvtk dpyfniiitd
      781 yssddmdvek alkrsalhsy rylklsgnfe rsaglqagid lvtdphsiif lcdlhihfpa
      841 gvidsirkhc vegkmafapm vmrlhcgmsp qwpdgywevn gfgllgiyks dldkiggmnt
      901 kefrdrwgge dwelldrilq agleverlsl rnffhwfhsk rgmwnrrqlk tl
//
LOCUS       XP_009555393             192 aa            linear   VRT 09-MAR-2023
DEFINITION  ninjurin-2 [Cuculus canorus].
ACCESSION   XP_009555393
VERSION     XP_009555393.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557098.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555393.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..192
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..192
                     /product="ninjurin-2"
                     /calculated_mol_wt=21181
     Region          75..176
                     /region_name="Ninjurin"
                     /note="pfam04923"
                     /db_xref="CDD:461482"
     CDS             1..192
                     /gene="NINJ2"
                     /coded_by="XM_009557098.2:131..709"
                     /db_xref="GeneID:104055908"
ORIGIN      
        1 mprraggrqq mnsrsvpaaa rlgpgrresl raqsaplraq sageetwrsr masegesinl
       61 qgmnphlrin gpmninhyat kksvaesmld valfmanvtq lkavleqgps fqyyitlivl
      121 isislffqvi igilliisar lnlndvakqp rlnilnntat alifitviln ifitafgvqk
      181 tglyptrnfr py
//
LOCUS       XP_053938999            1937 aa            linear   VRT 09-MAR-2023
DEFINITION  SH3 and multiple ankyrin repeat domains protein 3 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053938999
VERSION     XP_053938999.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083024.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1937
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1937
                     /product="SH3 and multiple ankyrin repeat domains protein
                     3 isoform X1"
                     /calculated_mol_wt=210616
     Region          138..223
                     /region_name="FERM_F0_SHANK3"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F0 sub-domain, found in SH3 and multiple ankyrin
                     repeat domains protein 3 (SHANK3); cd17177"
                     /db_xref="CDD:340697"
     Region          230..469
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          281..309
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(311,313,317..318,321..323,325..326,330,333,342,344,
                     346,384..385,388..390,392..393,397,400,409,411,413,
                     417..418,421..423,425..426,430,433,442)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          311..342
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          344..409
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          411..442
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          618..677
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(624,626,629,633,659..660,673,675..676)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212690"
     Region          755..855
                     /region_name="PDZ_SHANK1_3-like"
                     /note="PDZ domain of SH3 and multiple ankyrin repeat
                     domains protein 1 (SHANK1), SHANK2, SHANK3, and related
                     domains; cd06746"
                     /db_xref="CDD:467228"
     Site            order(755..760,790..793,828,830,853)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467228"
     Site            order(772..778,802,805,834,838,841..842)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467228"
     Region          <1446..1584
                     /region_name="PRK12323"
                     /note="DNA polymerase III subunit gamma/tau; cl46901"
                     /db_xref="CDD:481241"
     Region          1870..1934
                     /region_name="SAM_Shank1,2,3"
                     /note="SAM domain of Shank1,2,3 family proteins; cd09506"
                     /db_xref="CDD:188905"
     Site            order(1873..1875,1877,1891..1892,1905)
                     /site_type="other"
                     /note="polymer interface (interfiber) [polypeptide
                     binding]"
                     /db_xref="CDD:188905"
     Site            order(1890..1891,1923)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188905"
     Site            order(1914,1916,1921)
                     /site_type="other"
                     /note="polymer interface (intrafiber) [polypeptide
                     binding]"
                     /db_xref="CDD:188905"
     CDS             1..1937
                     /gene="SHANK3"
                     /coded_by="XM_054083024.1:175..5988"
                     /db_xref="GeneID:104059677"
ORIGIN      
        1 mrdedttkpw lyvvelagpp gptlagwgvv pseakkphrs prspvpsphg ghrafysdhr
       61 ppssrghrws isnvgavred tsaapmgiag hararvpraf eappaaapmp lsaggsdhes
      121 pepppepppa praappglvv rigvpdlqqt kclrlnpdvp vwiskqrilc tlnhslkdvl
      181 nyglfqpafn gragkfldee rllreyplnp dtpvpylefr ykrrvytqtl lddkqfaklh
      241 tkanlkkfme yvqmlnvekv crllekgldp nfhdqdtgec pltaaaqlel stemiktlrn
      301 ggahldfrtr egmtalhkav qcrnhaallt lldlgaspdy kdsrgltply hsamvggdpy
      361 ccelllhdya rlgcvdengw qeihqacryg hvqhlehllf ygadmtaqna sgntalhica
      421 lynqescarv llfrgaskei rnfnsqtafq vaiiagnfel aeiikthkes dvvpfretps
      481 ytkrrrilga gglssprvlq rsasdnnlka esrasyspvp slrslppqll aqmqeaaaaa
      541 dgssgsarsa hsrspslqrv qeekeadlpt lrrssrgkas pggpaappag pgpapapvaa
      601 paplrgpkrk lysavpgrkf iavksyapqg dgeiqlnrge avkadeqlre fvlsigeggf
      661 wegtvkgrtg wfpaecveev qmrqydprqv sprtagmgqs grpphrkthe gppaprvpsr
      721 skkspsglet redrtkrlfr hytvgsydnf tshsdyiiee ktavlqkreh egfgfvlrga
      781 kaetpieeft ptpafpalqy lesvdvegva wraglrtgdf lievngvnvv kvghkqvvsl
      841 irqggnhlvm kvvsvsrkpe seevvrkkap pppkrapstt ltlrsksmta eleelasmrr
      901 rkgekldeil aaaepalrad iveadsraat vkqrptsrri tpaeisslfe rqgmaahsgv
      961 lagaekphvs lrkgiprtks vgedeklaas lldgkfprst smqdtvregh gippppqtap
     1021 ppppspyyfd tapppsfspp pppgraydti rssfkpslea klhglpqvis aaemydqart
     1081 sipyperqkr arsmiilqds shlpveptei prpgpsatpp eklkrkgrvi dnpyanmgqf
     1141 nvslfaptkp qrkksplvkq lqvedaqera alsitggftr epsptrrshr lsgveyqhht
     1201 giaqveatsi pfataiagvm kdrdrrlder rkstvflsvg aiegtppssd mpslqqsrsi
     1261 derllgsrdv llpspvsalk plissssstf ihpltgkpld pnsplalala areralstqv
     1321 psrsptpihs pdseraaplf vdiqtkeper geleslvspa yspggkgtig tdsgtlapak
     1381 sqwgtpstlr ketearvetp gkeekkqedk ksmiisivdt sqqktaglim vhatsngqde
     1441 igleikeekp avpeectepa etpkaetqps pvgkppvspa sdktlgqgss eeevepytvt
     1501 lppaqlsssd eetreelaki glvpppdefa ngvlvttpgt pvshlatpst psipaaavap
     1561 sttggtpsgk psdapvapes aadsgveevd trsssdhhle ttstistvss mstlssesge
     1621 ptdtytsfad gqtfilekpp vppkpklksq lskgpvtfrd pllkqssdse lisqqhaatl
     1681 asasigrpry lfqrrsklwg dpmesrpihg adddkptvis elssrlqqln kdtrslgeep
     1741 agstldpgkk spvvaarlfs slgelstisq rssgttytvr pgsrypvtrr tpspvkpald
     1801 rteplstvrp ygltpptilk ssslsiphep kevrfvvrsv sarsrspsps pspgpplhtl
     1861 hpprpfmqkp lhlwnkydvg dwlesinlve hrdkfedhei egthlpaltk edfvelgvtr
     1921 vghrmniera lkqlvds
//
LOCUS       XP_053939010            1929 aa            linear   VRT 09-MAR-2023
DEFINITION  SH3 and multiple ankyrin repeat domains protein 3 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053939010
VERSION     XP_053939010.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083035.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1929
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1929
                     /product="SH3 and multiple ankyrin repeat domains protein
                     3 isoform X2"
                     /calculated_mol_wt=209627
     Region          138..223
                     /region_name="FERM_F0_SHANK3"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F0 sub-domain, found in SH3 and multiple ankyrin
                     repeat domains protein 3 (SHANK3); cd17177"
                     /db_xref="CDD:340697"
     Region          230..469
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          281..309
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(311,313,317..318,321..323,325..326,330,333,342,344,
                     346,384..385,388..390,392..393,397,400,409,411,413,
                     417..418,421..423,425..426,430,433,442)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          311..342
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          344..409
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          411..442
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          618..669
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(624,626,629,633,651..652,665,667..668)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212690"
     Region          747..847
                     /region_name="PDZ_SHANK1_3-like"
                     /note="PDZ domain of SH3 and multiple ankyrin repeat
                     domains protein 1 (SHANK1), SHANK2, SHANK3, and related
                     domains; cd06746"
                     /db_xref="CDD:467228"
     Site            order(747..752,782..785,820,822,845)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467228"
     Site            order(764..770,794,797,826,830,833..834)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467228"
     Region          <1438..1576
                     /region_name="PRK12323"
                     /note="DNA polymerase III subunit gamma/tau; cl46901"
                     /db_xref="CDD:481241"
     Region          1862..1926
                     /region_name="SAM_Shank1,2,3"
                     /note="SAM domain of Shank1,2,3 family proteins; cd09506"
                     /db_xref="CDD:188905"
     Site            order(1865..1867,1869,1883..1884,1897)
                     /site_type="other"
                     /note="polymer interface (interfiber) [polypeptide
                     binding]"
                     /db_xref="CDD:188905"
     Site            order(1882..1883,1915)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188905"
     Site            order(1906,1908,1913)
                     /site_type="other"
                     /note="polymer interface (intrafiber) [polypeptide
                     binding]"
                     /db_xref="CDD:188905"
     CDS             1..1929
                     /gene="SHANK3"
                     /coded_by="XM_054083035.1:174..5963"
                     /db_xref="GeneID:104059677"
ORIGIN      
        1 mrdedttkpw lyvvelagpp gptlagwgvv pseakkphrs prspvpsphg ghrafysdhr
       61 ppssrghrws isnvgavred tsaapmgiag hararvpraf eappaaapmp lsaggsdhes
      121 pepppepppa praappglvv rigvpdlqqt kclrlnpdvp vwiskqrilc tlnhslkdvl
      181 nyglfqpafn gragkfldee rllreyplnp dtpvpylefr ykrrvytqtl lddkqfaklh
      241 tkanlkkfme yvqmlnvekv crllekgldp nfhdqdtgec pltaaaqlel stemiktlrn
      301 ggahldfrtr egmtalhkav qcrnhaallt lldlgaspdy kdsrgltply hsamvggdpy
      361 ccelllhdya rlgcvdengw qeihqacryg hvqhlehllf ygadmtaqna sgntalhica
      421 lynqescarv llfrgaskei rnfnsqtafq vaiiagnfel aeiikthkes dvvpfretps
      481 ytkrrrilga gglssprvlq rsasdnnlka esrasyspvp slrslppqll aqmqeaaaaa
      541 dgssgsarsa hsrspslqrv qeekeadlpt lrrssrgkas pggpaappag pgpapapvaa
      601 paplrgpkrk lysavpgrkf iavksyapqg dgeiqlnrge avkvlsigeg gfwegtvkgr
      661 tgwfpaecve evqmrqydpr qvsprtagmg qsgrpphrkt hegppaprvp srskkspsgl
      721 etredrtkrl frhytvgsyd nftshsdyii eektavlqkr ehegfgfvlr gakaetpiee
      781 ftptpafpal qylesvdveg vawraglrtg dflievngvn vvkvghkqvv slirqggnhl
      841 vmkvvsvsrk peseevvrkk appppkraps ttltlrsksm taeleelasm rrrkgeklde
      901 ilaaaepalr adiveadsra atvkqrptsr ritpaeissl ferqgmaahs gvlagaekph
      961 vslrkgiprt ksvgedekla aslldgkfpr stsmqdtvre ghgippppqt apppppspyy
     1021 fdtapppsfs pppppgrayd tirssfkpsl eaklhglpqv isaaemydqa rtsipyperq
     1081 krarsmiilq dsshlpvept eiprpgpsat ppeklkrkgr vidnpyanmg qfnvslfapt
     1141 kpqrkksplv kqlqvedaqe raalsitggf trepsptrrs hrlsgveyqh htgiaqveat
     1201 sipfataiag vmkdrdrrld errkstvfls vgaiegtpps sdmpslqqsr siderllgsr
     1261 dvllpspvsa lkplisssss tfihpltgkp ldpnsplala laareralst qvpsrsptpi
     1321 hspdseraap lfvdiqtkep ergeleslvs payspggkgt igtdsgtlap aksqwgtpst
     1381 lrketearve tpgkeekkqe dkksmiisiv dtsqqktagl imvhatsngq deigleikee
     1441 kpavpeecte paetpkaetq pspvgkppvs pasdktlgqg sseeevepyt vtlppaqlss
     1501 sdeetreela kiglvpppde fangvlvttp gtpvshlatp stpsipaaav apsttggtps
     1561 gkpsdapvap esaadsgvee vdtrsssdhh lettstistv ssmstlsses geptdtytsf
     1621 adgqtfilek ppvppkpklk sqlskgpvtf rdpllkqssd selisqqhaa tlasasigrp
     1681 rylfqrrskl wgdpmesrpi hgadddkptv iselssrlqq lnkdtrslge epagstldpg
     1741 kkspvvaarl fsslgelsti sqrssgttyt vrpgsrypvt rrtpspvkpa ldrteplstv
     1801 rpygltppti lkssslsiph epkevrfvvr svsarsrsps pspspgpplh tlhpprpfmq
     1861 kplhlwnkyd vgdwlesinl vehrdkfedh eiegthlpal tkedfvelgv trvghrmnie
     1921 ralkqlvds
//
LOCUS       XP_053939020            1929 aa            linear   VRT 09-MAR-2023
DEFINITION  SH3 and multiple ankyrin repeat domains protein 3 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053939020
VERSION     XP_053939020.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083045.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1929
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1929
                     /product="SH3 and multiple ankyrin repeat domains protein
                     3 isoform X3"
                     /calculated_mol_wt=209673
     Region          138..223
                     /region_name="FERM_F0_SHANK3"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F0 sub-domain, found in SH3 and multiple ankyrin
                     repeat domains protein 3 (SHANK3); cd17177"
                     /db_xref="CDD:340697"
     Region          230..469
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          281..309
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(311,313,317..318,321..323,325..326,330,333,342,344,
                     346,384..385,388..390,392..393,397,400,409,411,413,
                     417..418,421..423,425..426,430,433,442)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          311..342
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          344..409
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          411..442
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          618..677
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(624,626,629,633,659..660,673,675..676)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212690"
     Region          755..855
                     /region_name="PDZ_SHANK1_3-like"
                     /note="PDZ domain of SH3 and multiple ankyrin repeat
                     domains protein 1 (SHANK1), SHANK2, SHANK3, and related
                     domains; cd06746"
                     /db_xref="CDD:467228"
     Site            order(755..760,790..793,828,830,853)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467228"
     Site            order(772..778,802,805,834,838,841..842)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467228"
     Region          <1438..1576
                     /region_name="PRK12323"
                     /note="DNA polymerase III subunit gamma/tau; cl46901"
                     /db_xref="CDD:481241"
     Region          1862..1926
                     /region_name="SAM_Shank1,2,3"
                     /note="SAM domain of Shank1,2,3 family proteins; cd09506"
                     /db_xref="CDD:188905"
     Site            order(1865..1867,1869,1883..1884,1897)
                     /site_type="other"
                     /note="polymer interface (interfiber) [polypeptide
                     binding]"
                     /db_xref="CDD:188905"
     Site            order(1882..1883,1915)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188905"
     Site            order(1906,1908,1913)
                     /site_type="other"
                     /note="polymer interface (intrafiber) [polypeptide
                     binding]"
                     /db_xref="CDD:188905"
     CDS             1..1929
                     /gene="SHANK3"
                     /coded_by="XM_054083045.1:174..5963"
                     /db_xref="GeneID:104059677"
ORIGIN      
        1 mrdedttkpw lyvvelagpp gptlagwgvv pseakkphrs prspvpsphg ghrafysdhr
       61 ppssrghrws isnvgavred tsaapmgiag hararvpraf eappaaapmp lsaggsdhes
      121 pepppepppa praappglvv rigvpdlqqt kclrlnpdvp vwiskqrilc tlnhslkdvl
      181 nyglfqpafn gragkfldee rllreyplnp dtpvpylefr ykrrvytqtl lddkqfaklh
      241 tkanlkkfme yvqmlnvekv crllekgldp nfhdqdtgec pltaaaqlel stemiktlrn
      301 ggahldfrtr egmtalhkav qcrnhaallt lldlgaspdy kdsrgltply hsamvggdpy
      361 ccelllhdya rlgcvdengw qeihqacryg hvqhlehllf ygadmtaqna sgntalhica
      421 lynqescarv llfrgaskei rnfnsqtafq vaiiagnfel aeiikthkes dvvpfretps
      481 ytkrrrilga gglssprvlq rsasdnnlka esrasyspvp slrslppqll aqmqeaaaaa
      541 dgssgsarsa hsrspslqrv qeekeadlpt lrrssrgkas pggpaappag pgpapapvaa
      601 paplrgpkrk lysavpgrkf iavksyapqg dgeiqlnrge avkadeqlre fvlsigeggf
      661 wegtvkgrtg wfpaecveev qmrqydprqv sprtagmgqs grpphrkthe gppaprvpsr
      721 skkspsglet redrtkrlfr hytvgsydnf tshsdyiiee ktavlqkreh egfgfvlrga
      781 kaetpieeft ptpafpalqy lesvdvegva wraglrtgdf lievngvnvv kvghkqvvsl
      841 irqggnhlvm kvvsvsrkpe seevvrkkap pppkrapstt ltlrsksmta eleeleklde
      901 ilaaaepalr adiveadsra atvkqrptsr ritpaeissl ferqgmaahs gvlagaekph
      961 vslrkgiprt ksvgedekla aslldgkfpr stsmqdtvre ghgippppqt apppppspyy
     1021 fdtapppsfs pppppgrayd tirssfkpsl eaklhglpqv isaaemydqa rtsipyperq
     1081 krarsmiilq dsshlpvept eiprpgpsat ppeklkrkgr vidnpyanmg qfnvslfapt
     1141 kpqrkksplv kqlqvedaqe raalsitggf trepsptrrs hrlsgveyqh htgiaqveat
     1201 sipfataiag vmkdrdrrld errkstvfls vgaiegtpps sdmpslqqsr siderllgsr
     1261 dvllpspvsa lkplisssss tfihpltgkp ldpnsplala laareralst qvpsrsptpi
     1321 hspdseraap lfvdiqtkep ergeleslvs payspggkgt igtdsgtlap aksqwgtpst
     1381 lrketearve tpgkeekkqe dkksmiisiv dtsqqktagl imvhatsngq deigleikee
     1441 kpavpeecte paetpkaetq pspvgkppvs pasdktlgqg sseeevepyt vtlppaqlss
     1501 sdeetreela kiglvpppde fangvlvttp gtpvshlatp stpsipaaav apsttggtps
     1561 gkpsdapvap esaadsgvee vdtrsssdhh lettstistv ssmstlsses geptdtytsf
     1621 adgqtfilek ppvppkpklk sqlskgpvtf rdpllkqssd selisqqhaa tlasasigrp
     1681 rylfqrrskl wgdpmesrpi hgadddkptv iselssrlqq lnkdtrslge epagstldpg
     1741 kkspvvaarl fsslgelsti sqrssgttyt vrpgsrypvt rrtpspvkpa ldrteplstv
     1801 rpygltppti lkssslsiph epkevrfvvr svsarsrsps pspspgpplh tlhpprpfmq
     1861 kplhlwnkyd vgdwlesinl vehrdkfedh eiegthlpal tkedfvelgv trvghrmnie
     1921 ralkqlvds
//
LOCUS       XP_053939030            1898 aa            linear   VRT 09-MAR-2023
DEFINITION  SH3 and multiple ankyrin repeat domains protein 3 isoform X4
            [Cuculus canorus].
ACCESSION   XP_053939030
VERSION     XP_053939030.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083055.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1898
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1898
                     /product="SH3 and multiple ankyrin repeat domains protein
                     3 isoform X4"
                     /calculated_mol_wt=206547
     Region          138..223
                     /region_name="FERM_F0_SHANK3"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F0 sub-domain, found in SH3 and multiple ankyrin
                     repeat domains protein 3 (SHANK3); cd17177"
                     /db_xref="CDD:340697"
     Region          230..469
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          281..309
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(311,313,317..318,321..323,325..326,330,333,342,344,
                     346,384..385,388..390,392..393,397,400,409,411,413,
                     417..418,421..423,425..426,430,433,442)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          311..342
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          344..409
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          411..442
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          618..677
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(624,626,629,633,659..660,673,675..676)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212690"
     Region          716..816
                     /region_name="PDZ_SHANK1_3-like"
                     /note="PDZ domain of SH3 and multiple ankyrin repeat
                     domains protein 1 (SHANK1), SHANK2, SHANK3, and related
                     domains; cd06746"
                     /db_xref="CDD:467228"
     Site            order(716..721,751..754,789,791,814)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467228"
     Site            order(733..739,763,766,795,799,802..803)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467228"
     Region          <1407..1545
                     /region_name="PRK12323"
                     /note="DNA polymerase III subunit gamma/tau; cl46901"
                     /db_xref="CDD:481241"
     Region          1831..1895
                     /region_name="SAM_Shank1,2,3"
                     /note="SAM domain of Shank1,2,3 family proteins; cd09506"
                     /db_xref="CDD:188905"
     Site            order(1834..1836,1838,1852..1853,1866)
                     /site_type="other"
                     /note="polymer interface (interfiber) [polypeptide
                     binding]"
                     /db_xref="CDD:188905"
     Site            order(1851..1852,1884)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188905"
     Site            order(1875,1877,1882)
                     /site_type="other"
                     /note="polymer interface (intrafiber) [polypeptide
                     binding]"
                     /db_xref="CDD:188905"
     CDS             1..1898
                     /gene="SHANK3"
                     /coded_by="XM_054083055.1:173..5869"
                     /db_xref="GeneID:104059677"
ORIGIN      
        1 mrdedttkpw lyvvelagpp gptlagwgvv pseakkphrs prspvpsphg ghrafysdhr
       61 ppssrghrws isnvgavred tsaapmgiag hararvpraf eappaaapmp lsaggsdhes
      121 pepppepppa praappglvv rigvpdlqqt kclrlnpdvp vwiskqrilc tlnhslkdvl
      181 nyglfqpafn gragkfldee rllreyplnp dtpvpylefr ykrrvytqtl lddkqfaklh
      241 tkanlkkfme yvqmlnvekv crllekgldp nfhdqdtgec pltaaaqlel stemiktlrn
      301 ggahldfrtr egmtalhkav qcrnhaallt lldlgaspdy kdsrgltply hsamvggdpy
      361 ccelllhdya rlgcvdengw qeihqacryg hvqhlehllf ygadmtaqna sgntalhica
      421 lynqescarv llfrgaskei rnfnsqtafq vaiiagnfel aeiikthkes dvvpfretps
      481 ytkrrrilga gglssprvlq rsasdnnlka esrasyspvp slrslppqll aqmqeaaaaa
      541 dgssgsarsa hsrspslqrv qeekeadlpt lrrssrgkas pggpaappag pgpapapvaa
      601 paplrgpkrk lysavpgrkf iavksyapqg dgeiqlnrge avkadeqlre fvlsigeggf
      661 wegtvkgrtg wfpaecveev qmrqydprqe tredrtkrlf rhytvgsydn ftshsdyiie
      721 ektavlqkre hegfgfvlrg akaetpieef tptpafpalq ylesvdvegv awraglrtgd
      781 flievngvnv vkvghkqvvs lirqggnhlv mkvvsvsrkp eseevvrkka ppppkrapst
      841 tltlrsksmt aeleelasmr rrkgekldei laaaepalra diveadsraa tvkqrptsrr
      901 itpaeisslf erqgmaahsg vlagaekphv slrkgiprtk svgedeklaa slldgkfprs
      961 tsmqdtvreg hgippppqta pppppspyyf dtapppsfsp ppppgraydt irssfkpsle
     1021 aklhglpqvi saaemydqar tsipyperqk rarsmiilqd sshlpvepte iprpgpsatp
     1081 peklkrkgrv idnpyanmgq fnvslfaptk pqrkksplvk qlqvedaqer aalsitggft
     1141 repsptrrsh rlsgveyqhh tgiaqveats ipfataiagv mkdrdrrlde rrkstvflsv
     1201 gaiegtppss dmpslqqsrs iderllgsrd vllpspvsal kplissssst fihpltgkpl
     1261 dpnsplalal aareralstq vpsrsptpih spdseraapl fvdiqtkepe rgeleslvsp
     1321 ayspggkgti gtdsgtlapa ksqwgtpstl rketearvet pgkeekkqed kksmiisivd
     1381 tsqqktagli mvhatsngqd eigleikeek pavpeectep aetpkaetqp spvgkppvsp
     1441 asdktlgqgs seeevepytv tlppaqlsss deetreelak iglvpppdef angvlvttpg
     1501 tpvshlatps tpsipaaava psttggtpsg kpsdapvape saadsgveev dtrsssdhhl
     1561 ettstistvs smstlssesg eptdtytsfa dgqtfilekp pvppkpklks qlskgpvtfr
     1621 dpllkqssds elisqqhaat lasasigrpr ylfqrrsklw gdpmesrpih gadddkptvi
     1681 selssrlqql nkdtrslgee pagstldpgk kspvvaarlf sslgelstis qrssgttytv
     1741 rpgsrypvtr rtpspvkpal drteplstvr pygltpptil kssslsiphe pkevrfvvrs
     1801 vsarsrspsp spspgpplht lhpprpfmqk plhlwnkydv gdwlesinlv ehrdkfedhe
     1861 iegthlpalt kedfvelgvt rvghrmnier alkqlvds
//
LOCUS       XP_053939038            1890 aa            linear   VRT 09-MAR-2023
DEFINITION  SH3 and multiple ankyrin repeat domains protein 3 isoform X5
            [Cuculus canorus].
ACCESSION   XP_053939038
VERSION     XP_053939038.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083063.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1890
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1890
                     /product="SH3 and multiple ankyrin repeat domains protein
                     3 isoform X5"
                     /calculated_mol_wt=205558
     Region          138..223
                     /region_name="FERM_F0_SHANK3"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F0 sub-domain, found in SH3 and multiple ankyrin
                     repeat domains protein 3 (SHANK3); cd17177"
                     /db_xref="CDD:340697"
     Region          230..469
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          281..309
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(311,313,317..318,321..323,325..326,330,333,342,344,
                     346,384..385,388..390,392..393,397,400,409,411,413,
                     417..418,421..423,425..426,430,433,442)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          311..342
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          344..409
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          411..442
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          618..669
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(624,626,629,633,651..652,665,667..668)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212690"
     Region          708..808
                     /region_name="PDZ_SHANK1_3-like"
                     /note="PDZ domain of SH3 and multiple ankyrin repeat
                     domains protein 1 (SHANK1), SHANK2, SHANK3, and related
                     domains; cd06746"
                     /db_xref="CDD:467228"
     Site            order(708..713,743..746,781,783,806)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467228"
     Site            order(725..731,755,758,787,791,794..795)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467228"
     Region          <1399..1537
                     /region_name="PRK12323"
                     /note="DNA polymerase III subunit gamma/tau; cl46901"
                     /db_xref="CDD:481241"
     Region          1823..1887
                     /region_name="SAM_Shank1,2,3"
                     /note="SAM domain of Shank1,2,3 family proteins; cd09506"
                     /db_xref="CDD:188905"
     Site            order(1826..1828,1830,1844..1845,1858)
                     /site_type="other"
                     /note="polymer interface (interfiber) [polypeptide
                     binding]"
                     /db_xref="CDD:188905"
     Site            order(1843..1844,1876)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188905"
     Site            order(1867,1869,1874)
                     /site_type="other"
                     /note="polymer interface (intrafiber) [polypeptide
                     binding]"
                     /db_xref="CDD:188905"
     CDS             1..1890
                     /gene="SHANK3"
                     /coded_by="XM_054083063.1:173..5845"
                     /db_xref="GeneID:104059677"
ORIGIN      
        1 mrdedttkpw lyvvelagpp gptlagwgvv pseakkphrs prspvpsphg ghrafysdhr
       61 ppssrghrws isnvgavred tsaapmgiag hararvpraf eappaaapmp lsaggsdhes
      121 pepppepppa praappglvv rigvpdlqqt kclrlnpdvp vwiskqrilc tlnhslkdvl
      181 nyglfqpafn gragkfldee rllreyplnp dtpvpylefr ykrrvytqtl lddkqfaklh
      241 tkanlkkfme yvqmlnvekv crllekgldp nfhdqdtgec pltaaaqlel stemiktlrn
      301 ggahldfrtr egmtalhkav qcrnhaallt lldlgaspdy kdsrgltply hsamvggdpy
      361 ccelllhdya rlgcvdengw qeihqacryg hvqhlehllf ygadmtaqna sgntalhica
      421 lynqescarv llfrgaskei rnfnsqtafq vaiiagnfel aeiikthkes dvvpfretps
      481 ytkrrrilga gglssprvlq rsasdnnlka esrasyspvp slrslppqll aqmqeaaaaa
      541 dgssgsarsa hsrspslqrv qeekeadlpt lrrssrgkas pggpaappag pgpapapvaa
      601 paplrgpkrk lysavpgrkf iavksyapqg dgeiqlnrge avkvlsigeg gfwegtvkgr
      661 tgwfpaecve evqmrqydpr qetredrtkr lfrhytvgsy dnftshsdyi ieektavlqk
      721 rehegfgfvl rgakaetpie eftptpafpa lqylesvdve gvawraglrt gdflievngv
      781 nvvkvghkqv vslirqggnh lvmkvvsvsr kpeseevvrk kappppkrap sttltlrsks
      841 mtaeleelas mrrrkgekld eilaaaepal radiveadsr aatvkqrpts rritpaeiss
      901 lferqgmaah sgvlagaekp hvslrkgipr tksvgedekl aaslldgkfp rstsmqdtvr
      961 eghgippppq tapppppspy yfdtapppsf spppppgray dtirssfkps leaklhglpq
     1021 visaaemydq artsipyper qkrarsmiil qdsshlpvep teiprpgpsa tppeklkrkg
     1081 rvidnpyanm gqfnvslfap tkpqrkkspl vkqlqvedaq eraalsitgg ftrepsptrr
     1141 shrlsgveyq hhtgiaqvea tsipfataia gvmkdrdrrl derrkstvfl svgaiegtpp
     1201 ssdmpslqqs rsiderllgs rdvllpspvs alkplissss stfihpltgk pldpnsplal
     1261 alaarerals tqvpsrsptp ihspdseraa plfvdiqtke pergeleslv spayspggkg
     1321 tigtdsgtla paksqwgtps tlrketearv etpgkeekkq edkksmiisi vdtsqqktag
     1381 limvhatsng qdeigleike ekpavpeect epaetpkaet qpspvgkppv spasdktlgq
     1441 gsseeevepy tvtlppaqls ssdeetreel akiglvpppd efangvlvtt pgtpvshlat
     1501 pstpsipaaa vapsttggtp sgkpsdapva pesaadsgve evdtrsssdh hlettstist
     1561 vssmstlsse sgeptdtyts fadgqtfile kppvppkpkl ksqlskgpvt frdpllkqss
     1621 dselisqqha atlasasigr prylfqrrsk lwgdpmesrp ihgadddkpt viselssrlq
     1681 qlnkdtrslg eepagstldp gkkspvvaar lfsslgelst isqrssgtty tvrpgsrypv
     1741 trrtpspvkp aldrteplst vrpygltppt ilkssslsip hepkevrfvv rsvsarsrsp
     1801 spspspgppl htlhpprpfm qkplhlwnky dvgdwlesin lvehrdkfed heiegthlpa
     1861 ltkedfvelg vtrvghrmni eralkqlvds
//
LOCUS       XP_053939047            1778 aa            linear   VRT 09-MAR-2023
DEFINITION  SH3 and multiple ankyrin repeat domains protein 3 isoform X6
            [Cuculus canorus].
ACCESSION   XP_053939047
VERSION     XP_053939047.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083072.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1778
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1778
                     /product="SH3 and multiple ankyrin repeat domains protein
                     3 isoform X6"
                     /calculated_mol_wt=192561
     Region          138..223
                     /region_name="FERM_F0_SHANK3"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F0 sub-domain, found in SH3 and multiple ankyrin
                     repeat domains protein 3 (SHANK3); cd17177"
                     /db_xref="CDD:340697"
     Region          230..469
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          281..309
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(311,313,317..318,321..323,325..326,330,333,342,344,
                     346,384..385,388..390,392..393,397,400,409,411,413,
                     417..418,421..423,425..426,430,433,442)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          311..342
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          344..409
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          411..442
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          618..677
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(624,626,629,633,659..660,673,675..676)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212690"
     Region          755..855
                     /region_name="PDZ_SHANK1_3-like"
                     /note="PDZ domain of SH3 and multiple ankyrin repeat
                     domains protein 1 (SHANK1), SHANK2, SHANK3, and related
                     domains; cd06746"
                     /db_xref="CDD:467228"
     Site            order(755..760,790..793,828,830,853)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467228"
     Site            order(772..778,802,805,834,838,841..842)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467228"
     Region          <1446..1584
                     /region_name="PRK12323"
                     /note="DNA polymerase III subunit gamma/tau; cl46901"
                     /db_xref="CDD:481241"
     CDS             1..1778
                     /gene="SHANK3"
                     /coded_by="XM_054083072.1:177..5513"
                     /db_xref="GeneID:104059677"
ORIGIN      
        1 mrdedttkpw lyvvelagpp gptlagwgvv pseakkphrs prspvpsphg ghrafysdhr
       61 ppssrghrws isnvgavred tsaapmgiag hararvpraf eappaaapmp lsaggsdhes
      121 pepppepppa praappglvv rigvpdlqqt kclrlnpdvp vwiskqrilc tlnhslkdvl
      181 nyglfqpafn gragkfldee rllreyplnp dtpvpylefr ykrrvytqtl lddkqfaklh
      241 tkanlkkfme yvqmlnvekv crllekgldp nfhdqdtgec pltaaaqlel stemiktlrn
      301 ggahldfrtr egmtalhkav qcrnhaallt lldlgaspdy kdsrgltply hsamvggdpy
      361 ccelllhdya rlgcvdengw qeihqacryg hvqhlehllf ygadmtaqna sgntalhica
      421 lynqescarv llfrgaskei rnfnsqtafq vaiiagnfel aeiikthkes dvvpfretps
      481 ytkrrrilga gglssprvlq rsasdnnlka esrasyspvp slrslppqll aqmqeaaaaa
      541 dgssgsarsa hsrspslqrv qeekeadlpt lrrssrgkas pggpaappag pgpapapvaa
      601 paplrgpkrk lysavpgrkf iavksyapqg dgeiqlnrge avkadeqlre fvlsigeggf
      661 wegtvkgrtg wfpaecveev qmrqydprqv sprtagmgqs grpphrkthe gppaprvpsr
      721 skkspsglet redrtkrlfr hytvgsydnf tshsdyiiee ktavlqkreh egfgfvlrga
      781 kaetpieeft ptpafpalqy lesvdvegva wraglrtgdf lievngvnvv kvghkqvvsl
      841 irqggnhlvm kvvsvsrkpe seevvrkkap pppkrapstt ltlrsksmta eleelasmrr
      901 rkgekldeil aaaepalrad iveadsraat vkqrptsrri tpaeisslfe rqgmaahsgv
      961 lagaekphvs lrkgiprtks vgedeklaas lldgkfprst smqdtvregh gippppqtap
     1021 ppppspyyfd tapppsfspp pppgraydti rssfkpslea klhglpqvis aaemydqart
     1081 sipyperqkr arsmiilqds shlpveptei prpgpsatpp eklkrkgrvi dnpyanmgqf
     1141 nvslfaptkp qrkksplvkq lqvedaqera alsitggftr epsptrrshr lsgveyqhht
     1201 giaqveatsi pfataiagvm kdrdrrlder rkstvflsvg aiegtppssd mpslqqsrsi
     1261 derllgsrdv llpspvsalk plissssstf ihpltgkpld pnsplalala areralstqv
     1321 psrsptpihs pdseraaplf vdiqtkeper geleslvspa yspggkgtig tdsgtlapak
     1381 sqwgtpstlr ketearvetp gkeekkqedk ksmiisivdt sqqktaglim vhatsngqde
     1441 igleikeekp avpeectepa etpkaetqps pvgkppvspa sdktlgqgss eeevepytvt
     1501 lppaqlsssd eetreelaki glvpppdefa ngvlvttpgt pvshlatpst psipaaavap
     1561 sttggtpsgk psdapvapes aadsgveevd trsssdhhle ttstistvss mstlssesge
     1621 ptdtytsfad gqtfilekpp vppkpklksq lskgpvtfrd pllkqssdse lisqqhaatl
     1681 asasigrpry lfqrrsklwg dpmesrpihg adddkptvis elssrlqqln kdtrslgeep
     1741 agstldpgkk spvvaaraal gssqpcrasq ksdshard
//
LOCUS       XP_053939053            1776 aa            linear   VRT 09-MAR-2023
DEFINITION  SH3 and multiple ankyrin repeat domains protein 3 isoform X7
            [Cuculus canorus].
ACCESSION   XP_053939053
VERSION     XP_053939053.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083078.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1776
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1776
                     /product="SH3 and multiple ankyrin repeat domains protein
                     3 isoform X7"
                     /calculated_mol_wt=192561
     Region          138..223
                     /region_name="FERM_F0_SHANK3"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F0 sub-domain, found in SH3 and multiple ankyrin
                     repeat domains protein 3 (SHANK3); cd17177"
                     /db_xref="CDD:340697"
     Region          230..469
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          281..309
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(311,313,317..318,321..323,325..326,330,333,342,344,
                     346,384..385,388..390,392..393,397,400,409,411,413,
                     417..418,421..423,425..426,430,433,442)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          311..342
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          344..409
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          411..442
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          618..677
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(624,626,629,633,659..660,673,675..676)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212690"
     Region          755..855
                     /region_name="PDZ_SHANK1_3-like"
                     /note="PDZ domain of SH3 and multiple ankyrin repeat
                     domains protein 1 (SHANK1), SHANK2, SHANK3, and related
                     domains; cd06746"
                     /db_xref="CDD:467228"
     Site            order(755..760,790..793,828,830,853)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467228"
     Site            order(772..778,802,805,834,838,841..842)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467228"
     Region          <1458..1584
                     /region_name="PRK12323"
                     /note="DNA polymerase III subunit gamma/tau; cl46901"
                     /db_xref="CDD:481241"
     CDS             1..1776
                     /gene="SHANK3"
                     /coded_by="XM_054083078.1:177..5507"
                     /db_xref="GeneID:104059677"
ORIGIN      
        1 mrdedttkpw lyvvelagpp gptlagwgvv pseakkphrs prspvpsphg ghrafysdhr
       61 ppssrghrws isnvgavred tsaapmgiag hararvpraf eappaaapmp lsaggsdhes
      121 pepppepppa praappglvv rigvpdlqqt kclrlnpdvp vwiskqrilc tlnhslkdvl
      181 nyglfqpafn gragkfldee rllreyplnp dtpvpylefr ykrrvytqtl lddkqfaklh
      241 tkanlkkfme yvqmlnvekv crllekgldp nfhdqdtgec pltaaaqlel stemiktlrn
      301 ggahldfrtr egmtalhkav qcrnhaallt lldlgaspdy kdsrgltply hsamvggdpy
      361 ccelllhdya rlgcvdengw qeihqacryg hvqhlehllf ygadmtaqna sgntalhica
      421 lynqescarv llfrgaskei rnfnsqtafq vaiiagnfel aeiikthkes dvvpfretps
      481 ytkrrrilga gglssprvlq rsasdnnlka esrasyspvp slrslppqll aqmqeaaaaa
      541 dgssgsarsa hsrspslqrv qeekeadlpt lrrssrgkas pggpaappag pgpapapvaa
      601 paplrgpkrk lysavpgrkf iavksyapqg dgeiqlnrge avkadeqlre fvlsigeggf
      661 wegtvkgrtg wfpaecveev qmrqydprqv sprtagmgqs grpphrkthe gppaprvpsr
      721 skkspsglet redrtkrlfr hytvgsydnf tshsdyiiee ktavlqkreh egfgfvlrga
      781 kaetpieeft ptpafpalqy lesvdvegva wraglrtgdf lievngvnvv kvghkqvvsl
      841 irqggnhlvm kvvsvsrkpe seevvrkkap pppkrapstt ltlrsksmta eleelasmrr
      901 rkgekldeil aaaepalrad iveadsraat vkqrptsrri tpaeisslfe rqgmaahsgv
      961 lagaekphvs lrkgiprtks vgedeklaas lldgkfprst smqdtvregh gippppqtap
     1021 ppppspyyfd tapppsfspp pppgraydti rssfkpslea klhglpqvis aaemydqart
     1081 sipyperqkr arsmiilqds shlpveptei prpgpsatpp eklkrkgrvi dnpyanmgqf
     1141 nvslfaptkp qrkksplvkq lqvedaqera alsitggftr epsptrrshr lsgveyqhht
     1201 giaqveatsi pfataiagvm kdrdrrlder rkstvflsvg aiegtppssd mpslqqsrsi
     1261 derllgsrdv llpspvsalk plissssstf ihpltgkpld pnsplalala areralstqv
     1321 psrsptpihs pdseraaplf vdiqtkeper geleslvspa yspggkgtig tdsgtlapak
     1381 sqwgtpstlr ketearvetp gkeekkqedk ksmiisivdt sqqktaglim vhatsngqde
     1441 igleikeekp avpeectepa etpkaetqps pvgkppvspa sdktlgqgss eeevepytvt
     1501 lppaqlsssd eetreelaki glvpppdefa ngvlvttpgt pvshlatpst psipaaavap
     1561 sttggtpsgk psdapvapes aadsgveevd trsssdhhle ttstistvss mstlssesge
     1621 ptdtytsfad gqtfilekpp vppkpklksq lskgpvtfrd pllkqssdse lisqqhaatl
     1681 asasigrpry lfqrrsklwg dpmesrpihg adddkptvis elssrlqqln kdtrslgeep
     1741 agstldpgkk spvvaarglr gswrgpprre dkplpp
//
LOCUS       XP_053939064            1776 aa            linear   VRT 09-MAR-2023
DEFINITION  SH3 and multiple ankyrin repeat domains protein 3 isoform X8
            [Cuculus canorus].
ACCESSION   XP_053939064
VERSION     XP_053939064.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083089.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1776
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1776
                     /product="SH3 and multiple ankyrin repeat domains protein
                     3 isoform X8"
                     /calculated_mol_wt=192646
     Region          138..223
                     /region_name="FERM_F0_SHANK3"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F0 sub-domain, found in SH3 and multiple ankyrin
                     repeat domains protein 3 (SHANK3); cd17177"
                     /db_xref="CDD:340697"
     Region          230..469
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          281..309
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(311,313,317..318,321..323,325..326,330,333,342,344,
                     346,384..385,388..390,392..393,397,400,409,411,413,
                     417..418,421..423,425..426,430,433,442)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          311..342
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          344..409
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          411..442
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          618..677
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(624,626,629,633,659..660,673,675..676)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212690"
     Region          755..855
                     /region_name="PDZ_SHANK1_3-like"
                     /note="PDZ domain of SH3 and multiple ankyrin repeat
                     domains protein 1 (SHANK1), SHANK2, SHANK3, and related
                     domains; cd06746"
                     /db_xref="CDD:467228"
     Site            order(755..760,790..793,828,830,853)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467228"
     Site            order(772..778,802,805,834,838,841..842)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467228"
     Region          <1458..1584
                     /region_name="PRK12323"
                     /note="DNA polymerase III subunit gamma/tau; cl46901"
                     /db_xref="CDD:481241"
     CDS             1..1776
                     /gene="SHANK3"
                     /coded_by="XM_054083089.1:177..5507"
                     /db_xref="GeneID:104059677"
ORIGIN      
        1 mrdedttkpw lyvvelagpp gptlagwgvv pseakkphrs prspvpsphg ghrafysdhr
       61 ppssrghrws isnvgavred tsaapmgiag hararvpraf eappaaapmp lsaggsdhes
      121 pepppepppa praappglvv rigvpdlqqt kclrlnpdvp vwiskqrilc tlnhslkdvl
      181 nyglfqpafn gragkfldee rllreyplnp dtpvpylefr ykrrvytqtl lddkqfaklh
      241 tkanlkkfme yvqmlnvekv crllekgldp nfhdqdtgec pltaaaqlel stemiktlrn
      301 ggahldfrtr egmtalhkav qcrnhaallt lldlgaspdy kdsrgltply hsamvggdpy
      361 ccelllhdya rlgcvdengw qeihqacryg hvqhlehllf ygadmtaqna sgntalhica
      421 lynqescarv llfrgaskei rnfnsqtafq vaiiagnfel aeiikthkes dvvpfretps
      481 ytkrrrilga gglssprvlq rsasdnnlka esrasyspvp slrslppqll aqmqeaaaaa
      541 dgssgsarsa hsrspslqrv qeekeadlpt lrrssrgkas pggpaappag pgpapapvaa
      601 paplrgpkrk lysavpgrkf iavksyapqg dgeiqlnrge avkadeqlre fvlsigeggf
      661 wegtvkgrtg wfpaecveev qmrqydprqv sprtagmgqs grpphrkthe gppaprvpsr
      721 skkspsglet redrtkrlfr hytvgsydnf tshsdyiiee ktavlqkreh egfgfvlrga
      781 kaetpieeft ptpafpalqy lesvdvegva wraglrtgdf lievngvnvv kvghkqvvsl
      841 irqggnhlvm kvvsvsrkpe seevvrkkap pppkrapstt ltlrsksmta eleelasmrr
      901 rkgekldeil aaaepalrad iveadsraat vkqrptsrri tpaeisslfe rqgmaahsgv
      961 lagaekphvs lrkgiprtks vgedeklaas lldgkfprst smqdtvregh gippppqtap
     1021 ppppspyyfd tapppsfspp pppgraydti rssfkpslea klhglpqvis aaemydqart
     1081 sipyperqkr arsmiilqds shlpveptei prpgpsatpp eklkrkgrvi dnpyanmgqf
     1141 nvslfaptkp qrkksplvkq lqvedaqera alsitggftr epsptrrshr lsgveyqhht
     1201 giaqveatsi pfataiagvm kdrdrrlder rkstvflsvg aiegtppssd mpslqqsrsi
     1261 derllgsrdv llpspvsalk plissssstf ihpltgkpld pnsplalala areralstqv
     1321 psrsptpihs pdseraaplf vdiqtkeper geleslvspa yspggkgtig tdsgtlapak
     1381 sqwgtpstlr ketearvetp gkeekkqedk ksmiisivdt sqqktaglim vhatsngqde
     1441 igleikeekp avpeectepa etpkaetqps pvgkppvspa sdktlgqgss eeevepytvt
     1501 lppaqlsssd eetreelaki glvpppdefa ngvlvttpgt pvshlatpst psipaaavap
     1561 sttggtpsgk psdapvapes aadsgveevd trsssdhhle ttstistvss mstlssesge
     1621 ptdtytsfad gqtfilekpp vppkpklksq lskgpvtfrd pllkqssdse lisqqhaatl
     1681 asasigrpry lfqrrsklwg dpmesrpihg adddkptvis elssrlqqln kdtrslgeep
     1741 agstldpgkk spvvaarrfc rggrltrgte keakky
//
LOCUS       XP_053939075            1773 aa            linear   VRT 09-MAR-2023
DEFINITION  SH3 and multiple ankyrin repeat domains protein 3 isoform X9
            [Cuculus canorus].
ACCESSION   XP_053939075
VERSION     XP_053939075.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083100.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1773
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1773
                     /product="SH3 and multiple ankyrin repeat domains protein
                     3 isoform X9"
                     /calculated_mol_wt=192143
     Region          138..223
                     /region_name="FERM_F0_SHANK3"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F0 sub-domain, found in SH3 and multiple ankyrin
                     repeat domains protein 3 (SHANK3); cd17177"
                     /db_xref="CDD:340697"
     Region          230..469
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          281..309
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(311,313,317..318,321..323,325..326,330,333,342,344,
                     346,384..385,388..390,392..393,397,400,409,411,413,
                     417..418,421..423,425..426,430,433,442)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          311..342
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          344..409
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          411..442
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          618..677
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(624,626,629,633,659..660,673,675..676)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212690"
     Region          755..855
                     /region_name="PDZ_SHANK1_3-like"
                     /note="PDZ domain of SH3 and multiple ankyrin repeat
                     domains protein 1 (SHANK1), SHANK2, SHANK3, and related
                     domains; cd06746"
                     /db_xref="CDD:467228"
     Site            order(755..760,790..793,828,830,853)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467228"
     Site            order(772..778,802,805,834,838,841..842)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467228"
     Region          <1446..1584
                     /region_name="PRK12323"
                     /note="DNA polymerase III subunit gamma/tau; cl46901"
                     /db_xref="CDD:481241"
     CDS             1..1773
                     /gene="SHANK3"
                     /coded_by="XM_054083100.1:177..5498"
                     /db_xref="GeneID:104059677"
ORIGIN      
        1 mrdedttkpw lyvvelagpp gptlagwgvv pseakkphrs prspvpsphg ghrafysdhr
       61 ppssrghrws isnvgavred tsaapmgiag hararvpraf eappaaapmp lsaggsdhes
      121 pepppepppa praappglvv rigvpdlqqt kclrlnpdvp vwiskqrilc tlnhslkdvl
      181 nyglfqpafn gragkfldee rllreyplnp dtpvpylefr ykrrvytqtl lddkqfaklh
      241 tkanlkkfme yvqmlnvekv crllekgldp nfhdqdtgec pltaaaqlel stemiktlrn
      301 ggahldfrtr egmtalhkav qcrnhaallt lldlgaspdy kdsrgltply hsamvggdpy
      361 ccelllhdya rlgcvdengw qeihqacryg hvqhlehllf ygadmtaqna sgntalhica
      421 lynqescarv llfrgaskei rnfnsqtafq vaiiagnfel aeiikthkes dvvpfretps
      481 ytkrrrilga gglssprvlq rsasdnnlka esrasyspvp slrslppqll aqmqeaaaaa
      541 dgssgsarsa hsrspslqrv qeekeadlpt lrrssrgkas pggpaappag pgpapapvaa
      601 paplrgpkrk lysavpgrkf iavksyapqg dgeiqlnrge avkadeqlre fvlsigeggf
      661 wegtvkgrtg wfpaecveev qmrqydprqv sprtagmgqs grpphrkthe gppaprvpsr
      721 skkspsglet redrtkrlfr hytvgsydnf tshsdyiiee ktavlqkreh egfgfvlrga
      781 kaetpieeft ptpafpalqy lesvdvegva wraglrtgdf lievngvnvv kvghkqvvsl
      841 irqggnhlvm kvvsvsrkpe seevvrkkap pppkrapstt ltlrsksmta eleelasmrr
      901 rkgekldeil aaaepalrad iveadsraat vkqrptsrri tpaeisslfe rqgmaahsgv
      961 lagaekphvs lrkgiprtks vgedeklaas lldgkfprst smqdtvregh gippppqtap
     1021 ppppspyyfd tapppsfspp pppgraydti rssfkpslea klhglpqvis aaemydqart
     1081 sipyperqkr arsmiilqds shlpveptei prpgpsatpp eklkrkgrvi dnpyanmgqf
     1141 nvslfaptkp qrkksplvkq lqvedaqera alsitggftr epsptrrshr lsgveyqhht
     1201 giaqveatsi pfataiagvm kdrdrrlder rkstvflsvg aiegtppssd mpslqqsrsi
     1261 derllgsrdv llpspvsalk plissssstf ihpltgkpld pnsplalala areralstqv
     1321 psrsptpihs pdseraaplf vdiqtkeper geleslvspa yspggkgtig tdsgtlapak
     1381 sqwgtpstlr ketearvetp gkeekkqedk ksmiisivdt sqqktaglim vhatsngqde
     1441 igleikeekp avpeectepa etpkaetqps pvgkppvspa sdktlgqgss eeevepytvt
     1501 lppaqlsssd eetreelaki glvpppdefa ngvlvttpgt pvshlatpst psipaaavap
     1561 sttggtpsgk psdapvapes aadsgveevd trsssdhhle ttstistvss mstlssesge
     1621 ptdtytsfad gqtfilekpp vppkpklksq lskgpvtfrd pllkqssdse lisqqhaatl
     1681 asasigrpry lfqrrsklwg dpmesrpihg adddkptvis elssrlqqln kdtrslgeep
     1741 agstldpgkk spvvaartas glrrvgelyf svv
//
LOCUS       XP_053939084            1765 aa            linear   VRT 09-MAR-2023
DEFINITION  SH3 and multiple ankyrin repeat domains protein 3 isoform X10
            [Cuculus canorus].
ACCESSION   XP_053939084
VERSION     XP_053939084.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083109.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1765
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1765
                     /product="SH3 and multiple ankyrin repeat domains protein
                     3 isoform X10"
                     /calculated_mol_wt=191451
     Region          138..223
                     /region_name="FERM_F0_SHANK3"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F0 sub-domain, found in SH3 and multiple ankyrin
                     repeat domains protein 3 (SHANK3); cd17177"
                     /db_xref="CDD:340697"
     Region          230..469
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          281..309
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(311,313,317..318,321..323,325..326,330,333,342,344,
                     346,384..385,388..390,392..393,397,400,409,411,413,
                     417..418,421..423,425..426,430,433,442)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          311..342
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          344..409
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          411..442
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          618..677
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(624,626,629,633,659..660,673,675..676)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212690"
     Region          755..855
                     /region_name="PDZ_SHANK1_3-like"
                     /note="PDZ domain of SH3 and multiple ankyrin repeat
                     domains protein 1 (SHANK1), SHANK2, SHANK3, and related
                     domains; cd06746"
                     /db_xref="CDD:467228"
     Site            order(755..760,790..793,828,830,853)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467228"
     Site            order(772..778,802,805,834,838,841..842)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467228"
     Region          <1446..1584
                     /region_name="PRK12323"
                     /note="DNA polymerase III subunit gamma/tau; cl46901"
                     /db_xref="CDD:481241"
     CDS             1..1765
                     /gene="SHANK3"
                     /coded_by="XM_054083109.1:177..5474"
                     /db_xref="GeneID:104059677"
ORIGIN      
        1 mrdedttkpw lyvvelagpp gptlagwgvv pseakkphrs prspvpsphg ghrafysdhr
       61 ppssrghrws isnvgavred tsaapmgiag hararvpraf eappaaapmp lsaggsdhes
      121 pepppepppa praappglvv rigvpdlqqt kclrlnpdvp vwiskqrilc tlnhslkdvl
      181 nyglfqpafn gragkfldee rllreyplnp dtpvpylefr ykrrvytqtl lddkqfaklh
      241 tkanlkkfme yvqmlnvekv crllekgldp nfhdqdtgec pltaaaqlel stemiktlrn
      301 ggahldfrtr egmtalhkav qcrnhaallt lldlgaspdy kdsrgltply hsamvggdpy
      361 ccelllhdya rlgcvdengw qeihqacryg hvqhlehllf ygadmtaqna sgntalhica
      421 lynqescarv llfrgaskei rnfnsqtafq vaiiagnfel aeiikthkes dvvpfretps
      481 ytkrrrilga gglssprvlq rsasdnnlka esrasyspvp slrslppqll aqmqeaaaaa
      541 dgssgsarsa hsrspslqrv qeekeadlpt lrrssrgkas pggpaappag pgpapapvaa
      601 paplrgpkrk lysavpgrkf iavksyapqg dgeiqlnrge avkadeqlre fvlsigeggf
      661 wegtvkgrtg wfpaecveev qmrqydprqv sprtagmgqs grpphrkthe gppaprvpsr
      721 skkspsglet redrtkrlfr hytvgsydnf tshsdyiiee ktavlqkreh egfgfvlrga
      781 kaetpieeft ptpafpalqy lesvdvegva wraglrtgdf lievngvnvv kvghkqvvsl
      841 irqggnhlvm kvvsvsrkpe seevvrkkap pppkrapstt ltlrsksmta eleelasmrr
      901 rkgekldeil aaaepalrad iveadsraat vkqrptsrri tpaeisslfe rqgmaahsgv
      961 lagaekphvs lrkgiprtks vgedeklaas lldgkfprst smqdtvregh gippppqtap
     1021 ppppspyyfd tapppsfspp pppgraydti rssfkpslea klhglpqvis aaemydqart
     1081 sipyperqkr arsmiilqds shlpveptei prpgpsatpp eklkrkgrvi dnpyanmgqf
     1141 nvslfaptkp qrkksplvkq lqvedaqera alsitggftr epsptrrshr lsgveyqhht
     1201 giaqveatsi pfataiagvm kdrdrrlder rkstvflsvg aiegtppssd mpslqqsrsi
     1261 derllgsrdv llpspvsalk plissssstf ihpltgkpld pnsplalala areralstqv
     1321 psrsptpihs pdseraaplf vdiqtkeper geleslvspa yspggkgtig tdsgtlapak
     1381 sqwgtpstlr ketearvetp gkeekkqedk ksmiisivdt sqqktaglim vhatsngqde
     1441 igleikeekp avpeectepa etpkaetqps pvgkppvspa sdktlgqgss eeevepytvt
     1501 lppaqlsssd eetreelaki glvpppdefa ngvlvttpgt pvshlatpst psipaaavap
     1561 sttggtpsgk psdapvapes aadsgveevd trsssdhhle ttstistvss mstlssesge
     1621 ptdtytsfad gqtfilekpp vppkpklksq lskgpvtfrd pllkqssdse lisqqhaatl
     1681 asasigrpry lfqrrsklwg dpmesrpihg adddkptvis elssrlqqln kdtrslgeep
     1741 agstldpgkk spvvaarser ereek
//
LOCUS       XP_053939091            1765 aa            linear   VRT 09-MAR-2023
DEFINITION  SH3 and multiple ankyrin repeat domains protein 3 isoform X10
            [Cuculus canorus].
ACCESSION   XP_053939091
VERSION     XP_053939091.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083116.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1765
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1765
                     /product="SH3 and multiple ankyrin repeat domains protein
                     3 isoform X10"
                     /calculated_mol_wt=191451
     Region          138..223
                     /region_name="FERM_F0_SHANK3"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F0 sub-domain, found in SH3 and multiple ankyrin
                     repeat domains protein 3 (SHANK3); cd17177"
                     /db_xref="CDD:340697"
     Region          230..469
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          281..309
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(311,313,317..318,321..323,325..326,330,333,342,344,
                     346,384..385,388..390,392..393,397,400,409,411,413,
                     417..418,421..423,425..426,430,433,442)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          311..342
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          344..409
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          411..442
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          618..677
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(624,626,629,633,659..660,673,675..676)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212690"
     Region          755..855
                     /region_name="PDZ_SHANK1_3-like"
                     /note="PDZ domain of SH3 and multiple ankyrin repeat
                     domains protein 1 (SHANK1), SHANK2, SHANK3, and related
                     domains; cd06746"
                     /db_xref="CDD:467228"
     Site            order(755..760,790..793,828,830,853)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467228"
     Site            order(772..778,802,805,834,838,841..842)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467228"
     Region          <1446..1584
                     /region_name="PRK12323"
                     /note="DNA polymerase III subunit gamma/tau; cl46901"
                     /db_xref="CDD:481241"
     CDS             1..1765
                     /gene="SHANK3"
                     /coded_by="XM_054083116.1:177..5474"
                     /db_xref="GeneID:104059677"
ORIGIN      
        1 mrdedttkpw lyvvelagpp gptlagwgvv pseakkphrs prspvpsphg ghrafysdhr
       61 ppssrghrws isnvgavred tsaapmgiag hararvpraf eappaaapmp lsaggsdhes
      121 pepppepppa praappglvv rigvpdlqqt kclrlnpdvp vwiskqrilc tlnhslkdvl
      181 nyglfqpafn gragkfldee rllreyplnp dtpvpylefr ykrrvytqtl lddkqfaklh
      241 tkanlkkfme yvqmlnvekv crllekgldp nfhdqdtgec pltaaaqlel stemiktlrn
      301 ggahldfrtr egmtalhkav qcrnhaallt lldlgaspdy kdsrgltply hsamvggdpy
      361 ccelllhdya rlgcvdengw qeihqacryg hvqhlehllf ygadmtaqna sgntalhica
      421 lynqescarv llfrgaskei rnfnsqtafq vaiiagnfel aeiikthkes dvvpfretps
      481 ytkrrrilga gglssprvlq rsasdnnlka esrasyspvp slrslppqll aqmqeaaaaa
      541 dgssgsarsa hsrspslqrv qeekeadlpt lrrssrgkas pggpaappag pgpapapvaa
      601 paplrgpkrk lysavpgrkf iavksyapqg dgeiqlnrge avkadeqlre fvlsigeggf
      661 wegtvkgrtg wfpaecveev qmrqydprqv sprtagmgqs grpphrkthe gppaprvpsr
      721 skkspsglet redrtkrlfr hytvgsydnf tshsdyiiee ktavlqkreh egfgfvlrga
      781 kaetpieeft ptpafpalqy lesvdvegva wraglrtgdf lievngvnvv kvghkqvvsl
      841 irqggnhlvm kvvsvsrkpe seevvrkkap pppkrapstt ltlrsksmta eleelasmrr
      901 rkgekldeil aaaepalrad iveadsraat vkqrptsrri tpaeisslfe rqgmaahsgv
      961 lagaekphvs lrkgiprtks vgedeklaas lldgkfprst smqdtvregh gippppqtap
     1021 ppppspyyfd tapppsfspp pppgraydti rssfkpslea klhglpqvis aaemydqart
     1081 sipyperqkr arsmiilqds shlpveptei prpgpsatpp eklkrkgrvi dnpyanmgqf
     1141 nvslfaptkp qrkksplvkq lqvedaqera alsitggftr epsptrrshr lsgveyqhht
     1201 giaqveatsi pfataiagvm kdrdrrlder rkstvflsvg aiegtppssd mpslqqsrsi
     1261 derllgsrdv llpspvsalk plissssstf ihpltgkpld pnsplalala areralstqv
     1321 psrsptpihs pdseraaplf vdiqtkeper geleslvspa yspggkgtig tdsgtlapak
     1381 sqwgtpstlr ketearvetp gkeekkqedk ksmiisivdt sqqktaglim vhatsngqde
     1441 igleikeekp avpeectepa etpkaetqps pvgkppvspa sdktlgqgss eeevepytvt
     1501 lppaqlsssd eetreelaki glvpppdefa ngvlvttpgt pvshlatpst psipaaavap
     1561 sttggtpsgk psdapvapes aadsgveevd trsssdhhle ttstistvss mstlssesge
     1621 ptdtytsfad gqtfilekpp vppkpklksq lskgpvtfrd pllkqssdse lisqqhaatl
     1681 asasigrpry lfqrrsklwg dpmesrpihg adddkptvis elssrlqqln kdtrslgeep
     1741 agstldpgkk spvvaarser ereek
//
LOCUS       XP_053939101            1765 aa            linear   VRT 09-MAR-2023
DEFINITION  SH3 and multiple ankyrin repeat domains protein 3 isoform X10
            [Cuculus canorus].
ACCESSION   XP_053939101
VERSION     XP_053939101.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083126.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1765
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1765
                     /product="SH3 and multiple ankyrin repeat domains protein
                     3 isoform X10"
                     /calculated_mol_wt=191451
     Region          138..223
                     /region_name="FERM_F0_SHANK3"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F0 sub-domain, found in SH3 and multiple ankyrin
                     repeat domains protein 3 (SHANK3); cd17177"
                     /db_xref="CDD:340697"
     Region          230..469
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          281..309
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(311,313,317..318,321..323,325..326,330,333,342,344,
                     346,384..385,388..390,392..393,397,400,409,411,413,
                     417..418,421..423,425..426,430,433,442)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          311..342
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          344..409
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          411..442
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          618..677
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(624,626,629,633,659..660,673,675..676)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212690"
     Region          755..855
                     /region_name="PDZ_SHANK1_3-like"
                     /note="PDZ domain of SH3 and multiple ankyrin repeat
                     domains protein 1 (SHANK1), SHANK2, SHANK3, and related
                     domains; cd06746"
                     /db_xref="CDD:467228"
     Site            order(755..760,790..793,828,830,853)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467228"
     Site            order(772..778,802,805,834,838,841..842)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467228"
     Region          <1446..1584
                     /region_name="PRK12323"
                     /note="DNA polymerase III subunit gamma/tau; cl46901"
                     /db_xref="CDD:481241"
     CDS             1..1765
                     /gene="SHANK3"
                     /coded_by="XM_054083126.1:177..5474"
                     /db_xref="GeneID:104059677"
ORIGIN      
        1 mrdedttkpw lyvvelagpp gptlagwgvv pseakkphrs prspvpsphg ghrafysdhr
       61 ppssrghrws isnvgavred tsaapmgiag hararvpraf eappaaapmp lsaggsdhes
      121 pepppepppa praappglvv rigvpdlqqt kclrlnpdvp vwiskqrilc tlnhslkdvl
      181 nyglfqpafn gragkfldee rllreyplnp dtpvpylefr ykrrvytqtl lddkqfaklh
      241 tkanlkkfme yvqmlnvekv crllekgldp nfhdqdtgec pltaaaqlel stemiktlrn
      301 ggahldfrtr egmtalhkav qcrnhaallt lldlgaspdy kdsrgltply hsamvggdpy
      361 ccelllhdya rlgcvdengw qeihqacryg hvqhlehllf ygadmtaqna sgntalhica
      421 lynqescarv llfrgaskei rnfnsqtafq vaiiagnfel aeiikthkes dvvpfretps
      481 ytkrrrilga gglssprvlq rsasdnnlka esrasyspvp slrslppqll aqmqeaaaaa
      541 dgssgsarsa hsrspslqrv qeekeadlpt lrrssrgkas pggpaappag pgpapapvaa
      601 paplrgpkrk lysavpgrkf iavksyapqg dgeiqlnrge avkadeqlre fvlsigeggf
      661 wegtvkgrtg wfpaecveev qmrqydprqv sprtagmgqs grpphrkthe gppaprvpsr
      721 skkspsglet redrtkrlfr hytvgsydnf tshsdyiiee ktavlqkreh egfgfvlrga
      781 kaetpieeft ptpafpalqy lesvdvegva wraglrtgdf lievngvnvv kvghkqvvsl
      841 irqggnhlvm kvvsvsrkpe seevvrkkap pppkrapstt ltlrsksmta eleelasmrr
      901 rkgekldeil aaaepalrad iveadsraat vkqrptsrri tpaeisslfe rqgmaahsgv
      961 lagaekphvs lrkgiprtks vgedeklaas lldgkfprst smqdtvregh gippppqtap
     1021 ppppspyyfd tapppsfspp pppgraydti rssfkpslea klhglpqvis aaemydqart
     1081 sipyperqkr arsmiilqds shlpveptei prpgpsatpp eklkrkgrvi dnpyanmgqf
     1141 nvslfaptkp qrkksplvkq lqvedaqera alsitggftr epsptrrshr lsgveyqhht
     1201 giaqveatsi pfataiagvm kdrdrrlder rkstvflsvg aiegtppssd mpslqqsrsi
     1261 derllgsrdv llpspvsalk plissssstf ihpltgkpld pnsplalala areralstqv
     1321 psrsptpihs pdseraaplf vdiqtkeper geleslvspa yspggkgtig tdsgtlapak
     1381 sqwgtpstlr ketearvetp gkeekkqedk ksmiisivdt sqqktaglim vhatsngqde
     1441 igleikeekp avpeectepa etpkaetqps pvgkppvspa sdktlgqgss eeevepytvt
     1501 lppaqlsssd eetreelaki glvpppdefa ngvlvttpgt pvshlatpst psipaaavap
     1561 sttggtpsgk psdapvapes aadsgveevd trsssdhhle ttstistvss mstlssesge
     1621 ptdtytsfad gqtfilekpp vppkpklksq lskgpvtfrd pllkqssdse lisqqhaatl
     1681 asasigrpry lfqrrsklwg dpmesrpihg adddkptvis elssrlqqln kdtrslgeep
     1741 agstldpgkk spvvaarser ereek
//
LOCUS       XP_053939109            1765 aa            linear   VRT 09-MAR-2023
DEFINITION  SH3 and multiple ankyrin repeat domains protein 3 isoform X10
            [Cuculus canorus].
ACCESSION   XP_053939109
VERSION     XP_053939109.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083134.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1765
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1765
                     /product="SH3 and multiple ankyrin repeat domains protein
                     3 isoform X10"
                     /calculated_mol_wt=191451
     Region          138..223
                     /region_name="FERM_F0_SHANK3"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F0 sub-domain, found in SH3 and multiple ankyrin
                     repeat domains protein 3 (SHANK3); cd17177"
                     /db_xref="CDD:340697"
     Region          230..469
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          281..309
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(311,313,317..318,321..323,325..326,330,333,342,344,
                     346,384..385,388..390,392..393,397,400,409,411,413,
                     417..418,421..423,425..426,430,433,442)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          311..342
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          344..409
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          411..442
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          618..677
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(624,626,629,633,659..660,673,675..676)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212690"
     Region          755..855
                     /region_name="PDZ_SHANK1_3-like"
                     /note="PDZ domain of SH3 and multiple ankyrin repeat
                     domains protein 1 (SHANK1), SHANK2, SHANK3, and related
                     domains; cd06746"
                     /db_xref="CDD:467228"
     Site            order(755..760,790..793,828,830,853)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467228"
     Site            order(772..778,802,805,834,838,841..842)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467228"
     Region          <1446..1584
                     /region_name="PRK12323"
                     /note="DNA polymerase III subunit gamma/tau; cl46901"
                     /db_xref="CDD:481241"
     CDS             1..1765
                     /gene="SHANK3"
                     /coded_by="XM_054083134.1:177..5474"
                     /db_xref="GeneID:104059677"
ORIGIN      
        1 mrdedttkpw lyvvelagpp gptlagwgvv pseakkphrs prspvpsphg ghrafysdhr
       61 ppssrghrws isnvgavred tsaapmgiag hararvpraf eappaaapmp lsaggsdhes
      121 pepppepppa praappglvv rigvpdlqqt kclrlnpdvp vwiskqrilc tlnhslkdvl
      181 nyglfqpafn gragkfldee rllreyplnp dtpvpylefr ykrrvytqtl lddkqfaklh
      241 tkanlkkfme yvqmlnvekv crllekgldp nfhdqdtgec pltaaaqlel stemiktlrn
      301 ggahldfrtr egmtalhkav qcrnhaallt lldlgaspdy kdsrgltply hsamvggdpy
      361 ccelllhdya rlgcvdengw qeihqacryg hvqhlehllf ygadmtaqna sgntalhica
      421 lynqescarv llfrgaskei rnfnsqtafq vaiiagnfel aeiikthkes dvvpfretps
      481 ytkrrrilga gglssprvlq rsasdnnlka esrasyspvp slrslppqll aqmqeaaaaa
      541 dgssgsarsa hsrspslqrv qeekeadlpt lrrssrgkas pggpaappag pgpapapvaa
      601 paplrgpkrk lysavpgrkf iavksyapqg dgeiqlnrge avkadeqlre fvlsigeggf
      661 wegtvkgrtg wfpaecveev qmrqydprqv sprtagmgqs grpphrkthe gppaprvpsr
      721 skkspsglet redrtkrlfr hytvgsydnf tshsdyiiee ktavlqkreh egfgfvlrga
      781 kaetpieeft ptpafpalqy lesvdvegva wraglrtgdf lievngvnvv kvghkqvvsl
      841 irqggnhlvm kvvsvsrkpe seevvrkkap pppkrapstt ltlrsksmta eleelasmrr
      901 rkgekldeil aaaepalrad iveadsraat vkqrptsrri tpaeisslfe rqgmaahsgv
      961 lagaekphvs lrkgiprtks vgedeklaas lldgkfprst smqdtvregh gippppqtap
     1021 ppppspyyfd tapppsfspp pppgraydti rssfkpslea klhglpqvis aaemydqart
     1081 sipyperqkr arsmiilqds shlpveptei prpgpsatpp eklkrkgrvi dnpyanmgqf
     1141 nvslfaptkp qrkksplvkq lqvedaqera alsitggftr epsptrrshr lsgveyqhht
     1201 giaqveatsi pfataiagvm kdrdrrlder rkstvflsvg aiegtppssd mpslqqsrsi
     1261 derllgsrdv llpspvsalk plissssstf ihpltgkpld pnsplalala areralstqv
     1321 psrsptpihs pdseraaplf vdiqtkeper geleslvspa yspggkgtig tdsgtlapak
     1381 sqwgtpstlr ketearvetp gkeekkqedk ksmiisivdt sqqktaglim vhatsngqde
     1441 igleikeekp avpeectepa etpkaetqps pvgkppvspa sdktlgqgss eeevepytvt
     1501 lppaqlsssd eetreelaki glvpppdefa ngvlvttpgt pvshlatpst psipaaavap
     1561 sttggtpsgk psdapvapes aadsgveevd trsssdhhle ttstistvss mstlssesge
     1621 ptdtytsfad gqtfilekpp vppkpklksq lskgpvtfrd pllkqssdse lisqqhaatl
     1681 asasigrpry lfqrrsklwg dpmesrpihg adddkptvis elssrlqqln kdtrslgeep
     1741 agstldpgkk spvvaarser ereek
//
LOCUS       XP_053939118            1219 aa            linear   VRT 09-MAR-2023
DEFINITION  C-Jun-amino-terminal kinase-interacting protein 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053939118
VERSION     XP_053939118.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083143.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1219
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1219
                     /product="C-Jun-amino-terminal kinase-interacting protein
                     2 isoform X1"
                     /calculated_mol_wt=132248
     Region          <188..367
                     /region_name="PRK07764"
                     /note="DNA polymerase III subunits gamma and tau;
                     Validated"
                     /db_xref="CDD:236090"
     Region          999..1053
                     /region_name="SH3_JIP2"
                     /note="Src homology 3 domain of JNK-interacting protein 2;
                     cd11942"
                     /db_xref="CDD:212875"
     Site            order(1004..1007,1009..1010,1012..1013,1028,1030..1032,
                     1034,1045,1047..1050)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:212875"
     Site            order(1004,1006,1009,1013,1031..1032,1047,1049..1050)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212875"
     Region          1070..1219
                     /region_name="PTB_JIP"
                     /note="JNK-interacting protein-like (JIP)
                     Phosphotyrosine-binding (PTB) domain; cd01212"
                     /db_xref="CDD:269923"
     Site            order(1077,1163,1183)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:269923"
     Site            order(1152..1157,1170,1192,1196)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:269923"
     CDS             1..1219
                     /gene="MAPK8IP2"
                     /coded_by="XM_054083143.1:36..3695"
                     /db_xref="GeneID:104059676"
ORIGIN      
        1 madraemfsl stfhslsppg crppqdisle efddedlsei tddcgiglny dsdhyekdcl
       61 vlergeqphp vctfqddfqe femiddneee eeeeeeeeeg neleappsps aspipspgle
      121 etqkhrpttl nltapgtqdt lnnngsfapp ahrttwqdal lhssssssss htghssphac
      181 iqdgpclesp kgpspggagq ppaslqpspf dsqgnshesl ahgnpsspra gedynmniis
      241 salraphsps plrqtppkps lsptgpaapp gstagsppra ptdghrappk qdaaggqdrr
      301 apseaggpgf pvtphqqpgs prpreeplag vvaerhdgqv arlpgayvrp vgpaellssd
      361 gegpqpgraa smrghpsgss ettspssdpg ieadltsrtt kpflpgsrhg edlsspgsds
      421 dvegeieaaf asgrlvsnmi ssiseteldl ssdsssgrss hltnsieeas sptseaelet
      481 eleapglmgi kdsllldkgk eeeeetlere lpehgmvrre slvelkmegy ydslnpmdps
      541 apagqtdvsv sspldlkidp dhslesirrs fylpvgpklm peadeednse ydsdsesepd
      601 lsedsdspwl lsnlvnkmis egsypikcpd ecfqqthslc dtispasdle peilsealdg
      661 epgsrdspvd pgeppalphc qraielvdme tlrsslqrae deralgavte pvpelpvdep
      721 gpflfmsnpt ndtiapvfag cpvtldrlga sevlatfgcr sgpprspprn spgtettttt
      781 agepqsteap pddwavdrdl dsgvleaddm iddvrlapqg qdpdaclptl dvstaktnrg
      841 ftmaystded etpylkgspf aedalrggfg gelppapgtl epraldesla ydsvkytlvv
      901 dehtqlelvs lrrctsvlsd dsdllracdr cdledeatfg dglvapdahs ssedsspead
      961 lqfskkflnv fvnstsrsss tesfglfscm vngeereqth ravfrfiprh edeleldvdd
     1021 pilveleedd ywyrgynmrt gergifpafy ahevvgqakd tiglkrnpcw verfnvqflg
     1081 svevpyhqgn gilcaamqki attrkltvhl rppascdlei tlqgiklilt vteysrdeef
     1141 ercshffqmk nisfcgchpr nscyfgfitk hpvlsrfach vfvsqesmrh vaecvgrafq
     1201 eyyqehleya cptediyle
//
LOCUS       XP_053939125            1177 aa            linear   VRT 09-MAR-2023
DEFINITION  C-Jun-amino-terminal kinase-interacting protein 2 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053939125
VERSION     XP_053939125.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083150.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1177
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1177
                     /product="C-Jun-amino-terminal kinase-interacting protein
                     2 isoform X2"
                     /calculated_mol_wt=127840
     Region          <185..361
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          957..1011
                     /region_name="SH3_JIP2"
                     /note="Src homology 3 domain of JNK-interacting protein 2;
                     cd11942"
                     /db_xref="CDD:212875"
     Site            order(962..965,967..968,970..971,986,988..990,992,1003,
                     1005..1008)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:212875"
     Site            order(962,964,967,971,989..990,1005,1007..1008)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212875"
     Region          1028..1177
                     /region_name="PTB_JIP"
                     /note="JNK-interacting protein-like (JIP)
                     Phosphotyrosine-binding (PTB) domain; cd01212"
                     /db_xref="CDD:269923"
     Site            order(1035,1121,1141)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:269923"
     Site            order(1110..1115,1128,1150,1154)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:269923"
     CDS             1..1177
                     /gene="MAPK8IP2"
                     /coded_by="XM_054083150.1:36..3569"
                     /db_xref="GeneID:104059676"
ORIGIN      
        1 madraemfsl stfhslsppg crppqdisle efddedlsei tddcgiglny dsdhyekdcl
       61 vlergeqphp vctfqddfqe femiddneee eeeeeeeeeg neleappsps aspipspgle
      121 etqkhrpttl nltapgtqdt lnnngsfapp ahrttwqdal lhssssssss htghssphac
      181 iqdgpclesp kgpspggagq ppaslqpspf dsqgnshesl ahgpaappgs tagspprapt
      241 dghrappkqd aaggqdrrap seaggpgfpv tphqqpgspr preeplagvv aerhdgqvar
      301 lpgayvrpvg paellssdge gpqpgraasm rghpsgsset tspssdpgie adltsrttkp
      361 flpgsrhged lsspgsdsdv egeieaafas grlvsnmiss iseteldlss dsssgrsshl
      421 tnsieeassp tseaeletel eapglmgikd sllldkgkee eeetlerelp ehgmvrresl
      481 velkmegyyd slnpmdpsap agqtdvsvss pldlkidpdh slesirrsfy lpvgpklmpe
      541 adeednseyd sdsesepdls edsdspwlls nlvnkmiseg sypikcpdec fqqthslcdt
      601 ispasdlepe ilsealdgep gsrdspvdpg eppalphcqr aielvdmetl rsslqraede
      661 ralgavtepv pelpvdepgp flfmsnptnd tiapvfagcp vtldrlgase vlatfgcrsg
      721 pprspprnsp gtetttttag epqsteappd dwavdrdlds gvleaddmid dvrlapqgqd
      781 pdaclptldv staktnrgft maystdedet pylkgspfae dalrggfgge lppapgtlep
      841 raldeslayd svkytlvvde htqlelvslr rctsvlsdds dllracdrcd ledeatfgdg
      901 lvapdahsss edsspeadlq fskkflnvfv nstsrssste sfglfscmvn geereqthra
      961 vfrfiprhed eleldvddpi lveleeddyw yrgynmrtge rgifpafyah evvgqakdti
     1021 glkrnpcwve rfnvqflgsv evpyhqgngi lcaamqkiat trkltvhlrp pascdleitl
     1081 qgikliltvt eysrdeefer cshffqmkni sfcgchprns cyfgfitkhp vlsrfachvf
     1141 vsqesmrhva ecvgrafqey yqehleyacp tediyle
//
LOCUS       XP_053939134             906 aa            linear   VRT 09-MAR-2023
DEFINITION  staphylococcal nuclease domain-containing protein 1 [Cuculus
            canorus].
ACCESSION   XP_053939134
VERSION     XP_053939134.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083159.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..906
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..906
                     /product="staphylococcal nuclease domain-containing
                     protein 1"
                     /calculated_mol_wt=101134
     Region          17..162
                     /region_name="SNc"
                     /note="Staphylococcal nuclease homologues; smart00318"
                     /db_xref="CDD:214615"
     Site            order(27,45,51,54,100..101,103)
                     /site_type="other"
                     /note="Catalytic site"
                     /db_xref="CDD:238102"
     Region          189..324
                     /region_name="SNc"
                     /note="Staphylococcal nuclease homologues; smart00318"
                     /db_xref="CDD:214615"
     Site            order(202,217,223,226,265..266,268)
                     /site_type="other"
                     /note="Catalytic site"
                     /db_xref="CDD:238102"
     Region          337..491
                     /region_name="SNc"
                     /note="Staphylococcal nuclease homologues; smart00318"
                     /db_xref="CDD:214615"
     Site            order(350,364,370,373,431..432,434)
                     /site_type="other"
                     /note="Catalytic site"
                     /db_xref="CDD:238102"
     Region          521..637
                     /region_name="SNc"
                     /note="Staphylococcal nuclease homologues; smart00318"
                     /db_xref="CDD:214615"
     Site            order(534,549,555,558,599..600,602)
                     /site_type="other"
                     /note="Catalytic site"
                     /db_xref="CDD:238102"
     Region          699..781
                     /region_name="Tudor_TDRD11"
                     /note="Tudor domain found in Tudor domain-containing
                     protein 11 (TDRD11) and similar proteins; cd20433"
                     /db_xref="CDD:410504"
     Site            order(704,736,738,742,759,762,764)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:410504"
     Region          <840..891
                     /region_name="SNc"
                     /note="Staphylococcal nuclease homologues. SNase
                     homologues are found in bacteria, archaea, and eukaryotes.
                     They contain no disufide bonds; cl00140"
                     /db_xref="CDD:469627"
     CDS             1..906
                     /gene="SND1"
                     /coded_by="XM_054083159.1:61..2781"
                     /db_xref="GeneID:104061492"
ORIGIN      
        1 maapgppgpa aplavqrgiv kmvlsgcaii vrgqprggpp perqinlsni ragnlarraa
       61 agqpdakdtp depwgfpare flrkkligke vcftveyktp qgreygmvyl gkdtsgenia
      121 eslvaeglas rregirannp eqsrlaelee qaksakkgmw segtgshtvr dlkytienpr
      181 yfvdsmhqkp vnaiiehvrd gsvvralllp dyylvtvmls gikcptfkre adntevpepf
      241 aaeakfftes rllqrdvqii leschnqnil gtilhpngni telllkegfa rcvdwsiavy
      301 trgadklraa erfakerklr iwrdyvapta nldqkdkqfv akvmqvlnad avvvklnsgd
      361 hktihlssir pprlegdgaq dknrklrply dipymfeare flrkkligkk vnvtvdyirp
      421 assatetvpa fsertcatvs igginiaeal vskglatvir yrqdddqrss hydellaaea
      481 raikngkglh skkevpihrv adisgdtqka kqflpflqra grseavveyv fsgsrlklfm
      541 pketclitfl lagiecprga rnlpgavqeg epfseeathf tkelvlqrev evevesmdka
      601 gnfigwlhie glnlsvalve hglsrvhfta erssyykalv gaedaakkkk ekvwshyeet
      661 pveevvpvle ekertanykp vfvteitddl hfyvqdvetg aqleklmenm raevgahppv
      721 egayaprrgd fciakfvdge wyrarvekve spskvhifyi dygnketlpa arlsalpaaf
      781 strvlpaqat qyrfafiqvp qdeearadav dsvvrdiqnt qcllnvelpg ppcplvtlqf
      841 adsksdvglg lvreglvmve prherhfqkv iteylnaqet aksarlnlwr ygdfraddad
      901 efgygr
//
LOCUS       XP_053939142             663 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich repeat-containing protein 4 [Cuculus canorus].
ACCESSION   XP_053939142
VERSION     XP_053939142.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083167.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..663
                     /product="leucine-rich repeat-containing protein 4"
                     /calculated_mol_wt=73811
     Region          54..87
                     /region_name="LRRNT"
                     /note="Leucine rich repeat N-terminal domain; smart00013"
                     /db_xref="CDD:214470"
     Region          <83..331
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          85..108
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          109..132
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          133..156
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          157..180
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          181..205
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          206..227
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          228..251
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          252..275
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          276..297
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          308..359
                     /region_name="LRRCT"
                     /note="Leucine rich repeat C-terminal domain; smart00082"
                     /db_xref="CDD:214507"
     Region          367..449
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          378..382
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          389..393
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          415..419
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          429..434
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          442..445
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..663
                     /gene="LRRC4"
                     /coded_by="XM_054083167.1:97..2088"
                     /db_xref="GeneID:104060528"
ORIGIN      
        1 mkllwqvigh hhrhrhrhrr rrhhrawraa lvsfltfhaw lfgaaaaspg pqscpsacsc
       61 tnqfskvvct rrglaevppg ipsntrylnl menniqmiqa dtfrhlhhle vlqlgrnair
      121 qievgafngl aslntlelfd nwltvipsga feylsklrel wlrnnpiesi psyafnrvps
      181 lmrldlgelk kleyisegaf eglynlkyln lgmcnikdmp nltplvglee lemsgnnfpq
      241 ikpgsfhglk alkklwimns qinliernaf ddltalveln lahnnlsslp hdlfaplryl
      301 velhlhhnpw dcdcdilwls wwlreyiptn stccgrchap lhmrgrflve vdqtsfqcsa
      361 pfimdaptdl nisegrvael kcrtpsmssv rwllpngtvl shasshprit vlndgtlnfs
      421 hvlltdtgly tcmvtnvagn snasaylnvs taelntsnys ffttvtvett eispedispk
      481 ftkpvpttst gyqpaytttt tvlvqttrtp kqvavptads adkmqtslde vmkttkiiig
      541 cfvavtllaa amlivfyklr krhqqrstvt aartveiiqv dediaatatt attaaapppa
      601 gaegavvlpa ihdhlsynay kaahgahwte nalgnslhpp gpnlaepyvi qthpkekvqe
      661 tqi
//
LOCUS       XP_053939152             571 aa            linear   VRT 09-MAR-2023
DEFINITION  inosine-5'-monophosphate dehydrogenase 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053939152
VERSION     XP_053939152.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083177.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..571
                     /product="inosine-5'-monophosphate dehydrogenase 1 isoform
                     X1"
                     /calculated_mol_wt=59149
     Region          21..516
                     /region_name="PTZ00314"
                     /note="inosine-5'-monophosphate dehydrogenase;
                     Provisional"
                     /db_xref="CDD:240355"
     CDS             1..571
                     /gene="IMPDH1"
                     /coded_by="XM_054083177.1:126..1841"
                     /db_xref="GeneID:128853960"
ORIGIN      
        1 mgegepsmad ylisggtgyv pedglsaqql lsadglsydd flilpgfidf tadevdltsa
       61 ltrkltlktp lvssprdsvt eadvaiamal mggigiihhn ctpefqanev rkvkkfeqgf
      121 itdpvvmspa qtvgdvraak arhgfsgipv thsgrlggrl egivtsrdid flgesdhgtr
      181 laqdgvgtva pqvmtkrkdl vvapagvtlk eaneilqrsk kgklpivner delvaiiart
      241 dlgknrehpl askdarkqll cgaalgtrgd dryrlellaq agadlvllds sqgnstyqva
      301 miqyiksryp qlqviggnvv taaqaknlid agvdalrvgm gcgppaiale ggacgrpqgt
      361 avyrvaeyar rfgvpviadg gvrtvghavk alalgastvm lgsllaaaae apellfpegg
      421 rlrpprslgp pdaergpgqg rccseaeavp ggsavpprgs iphlvpylia giqhgcrdig
      481 arslsalrsm mysgelkfer rtaaaqiegg vhglhsvtvl pctrsgsaee gahgrappas
      541 papcpgtpgl pprcppgtpg sggglrggct p
//
LOCUS       XP_053939161             570 aa            linear   VRT 09-MAR-2023
DEFINITION  inosine-5'-monophosphate dehydrogenase 1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053939161
VERSION     XP_053939161.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083186.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..570
                     /product="inosine-5'-monophosphate dehydrogenase 1 isoform
                     X2"
                     /calculated_mol_wt=59021
     Region          21..515
                     /region_name="PTZ00314"
                     /note="inosine-5'-monophosphate dehydrogenase;
                     Provisional"
                     /db_xref="CDD:240355"
     CDS             1..570
                     /gene="IMPDH1"
                     /coded_by="XM_054083186.1:127..1839"
                     /db_xref="GeneID:128853960"
ORIGIN      
        1 mgegepsmad ylisggtgyv pedglsaqql lsadglsydd flilpgfidf tadevdltsa
       61 ltrkltlktp lvssprdsvt eadvaiamal mggigiihhn ctpefqanev rkvkfeqgfi
      121 tdpvvmspaq tvgdvraaka rhgfsgipvt hsgrlggrle givtsrdidf lgesdhgtrl
      181 aqdgvgtvap qvmtkrkdlv vapagvtlke aneilqrskk gklpivnerd elvaiiartd
      241 lgknrehpla skdarkqllc gaalgtrgdd ryrlellaqa gadlvlldss qgnstyqvam
      301 iqyiksrypq lqviggnvvt aaqaknlida gvdalrvgmg cgppaialeg gacgrpqgta
      361 vyrvaeyarr fgvpviadgg vrtvghavka lalgastvml gsllaaaaea pellfpeggr
      421 lrpprslgpp daergpgqgr ccseaeavpg gsavpprgsi phlvpyliag iqhgcrdiga
      481 rslsalrsmm ysgelkferr taaaqieggv hglhsvtvlp ctrsgsaeeg ahgrappasp
      541 apcpgtpglp prcppgtpgs ggglrggctp
//
LOCUS       XP_053939170             566 aa            linear   VRT 09-MAR-2023
DEFINITION  inosine-5'-monophosphate dehydrogenase 1 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053939170
VERSION     XP_053939170.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083195.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..566
                     /product="inosine-5'-monophosphate dehydrogenase 1 isoform
                     X3"
                     /calculated_mol_wt=58538
     Region          21..511
                     /region_name="PTZ00314"
                     /note="inosine-5'-monophosphate dehydrogenase;
                     Provisional"
                     /db_xref="CDD:240355"
     CDS             1..566
                     /gene="IMPDH1"
                     /coded_by="XM_054083195.1:127..1827"
                     /db_xref="GeneID:128853960"
ORIGIN      
        1 mgegepsmad ylisggtgyv pedglsaqql lsadglsydd flilpgfidf tadevdltsa
       61 ltrkltlktp lvssprdsvt eadvaiamal mggigiihhn ctpefqanek feqgfitdpv
      121 vmspaqtvgd vraakarhgf sgipvthsgr lggrlegivt srdidflges dhgtrlaqdg
      181 vgtvapqvmt krkdlvvapa gvtlkeanei lqrskkgklp ivnerdelva iiartdlgkn
      241 rehplaskda rkqllcgaal gtrgddryrl ellaqagadl vlldssqgns tyqvamiqyi
      301 ksrypqlqvi ggnvvtaaqa knlidagvda lrvgmgcgpp aialeggacg rpqgtavyrv
      361 aeyarrfgvp viadggvrtv ghavkalalg astvmlgsll aaaaeapell fpeggrlrpp
      421 rslgppdaer gpgqgrccse aeavpggsav pprgsiphlv pyliagiqhg crdigarsls
      481 alrsmmysge lkferrtaaa qieggvhglh svtvlpctrs gsaeegahgr appaspapcp
      541 gtpglpprcp pgtpgsgggl rggctp
//
LOCUS       XP_053939179             565 aa            linear   VRT 09-MAR-2023
DEFINITION  inosine-5'-monophosphate dehydrogenase 1 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053939179
VERSION     XP_053939179.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083204.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..565
                     /product="inosine-5'-monophosphate dehydrogenase 1 isoform
                     X4"
                     /calculated_mol_wt=58410
     Region          21..510
                     /region_name="PTZ00314"
                     /note="inosine-5'-monophosphate dehydrogenase;
                     Provisional"
                     /db_xref="CDD:240355"
     CDS             1..565
                     /gene="IMPDH1"
                     /coded_by="XM_054083204.1:127..1824"
                     /db_xref="GeneID:128853960"
ORIGIN      
        1 mgegepsmad ylisggtgyv pedglsaqql lsadglsydd flilpgfidf tadevdltsa
       61 ltrkltlktp lvssprdsvt eadvaiamal mggigiihhn ctpefqanef eqgfitdpvv
      121 mspaqtvgdv raakarhgfs gipvthsgrl ggrlegivts rdidflgesd hgtrlaqdgv
      181 gtvapqvmtk rkdlvvapag vtlkeaneil qrskkgklpi vnerdelvai iartdlgknr
      241 ehplaskdar kqllcgaalg trgddryrle llaqagadlv lldssqgnst yqvamiqyik
      301 srypqlqvig gnvvtaaqak nlidagvdal rvgmgcgppa ialeggacgr pqgtavyrva
      361 eyarrfgvpv iadggvrtvg havkalalga stvmlgslla aaaeapellf peggrlrppr
      421 slgppdaerg pgqgrccsea eavpggsavp prgsiphlvp yliagiqhgc rdigarslsa
      481 lrsmmysgel kferrtaaaq ieggvhglhs vtvlpctrsg saeegahgra ppaspapcpg
      541 tpglpprcpp gtpgsggglr ggctp
//
LOCUS       XP_053939188             564 aa            linear   VRT 09-MAR-2023
DEFINITION  inosine-5'-monophosphate dehydrogenase 1 isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053939188
VERSION     XP_053939188.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083213.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..564
                     /product="inosine-5'-monophosphate dehydrogenase 1 isoform
                     X5"
                     /calculated_mol_wt=58461
     Region          14..509
                     /region_name="PTZ00314"
                     /note="inosine-5'-monophosphate dehydrogenase;
                     Provisional"
                     /db_xref="CDD:240355"
     CDS             1..564
                     /gene="IMPDH1"
                     /coded_by="XM_054083213.1:125..1819"
                     /db_xref="GeneID:128853960"
ORIGIN      
        1 madylisggt gyvpedglsa qqllsadgls yddflilpgf idftadevdl tsaltrkltl
       61 ktplvssprd svteadvaia malmggigii hhnctpefqa nevrkvkkfe qgfitdpvvm
      121 spaqtvgdvr aakarhgfsg ipvthsgrlg grlegivtsr didflgesdh gtrlaqdgvg
      181 tvapqvmtkr kdlvvapagv tlkeaneilq rskkgklpiv nerdelvaii artdlgknre
      241 hplaskdark qllcgaalgt rgddryrlel laqagadlvl ldssqgnsty qvamiqyiks
      301 rypqlqvigg nvvtaaqakn lidagvdalr vgmgcgppai aleggacgrp qgtavyrvae
      361 yarrfgvpvi adggvrtvgh avkalalgas tvmlgsllaa aaeapellfp eggrlrpprs
      421 lgppdaergp gqgrccseae avpggsavpp rgsiphlvpy liagiqhgcr digarslsal
      481 rsmmysgelk ferrtaaaqi eggvhglhsv tvlpctrsgs aeegahgrap paspapcpgt
      541 pglpprcppg tpgsggglrg gctp
//
LOCUS       XP_053939198             564 aa            linear   VRT 09-MAR-2023
DEFINITION  inosine-5'-monophosphate dehydrogenase 1 isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053939198
VERSION     XP_053939198.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083223.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..564
                     /product="inosine-5'-monophosphate dehydrogenase 1 isoform
                     X5"
                     /calculated_mol_wt=58461
     Region          14..509
                     /region_name="PTZ00314"
                     /note="inosine-5'-monophosphate dehydrogenase;
                     Provisional"
                     /db_xref="CDD:240355"
     CDS             1..564
                     /gene="IMPDH1"
                     /coded_by="XM_054083223.1:13..1707"
                     /db_xref="GeneID:128853960"
ORIGIN      
        1 madylisggt gyvpedglsa qqllsadgls yddflilpgf idftadevdl tsaltrkltl
       61 ktplvssprd svteadvaia malmggigii hhnctpefqa nevrkvkkfe qgfitdpvvm
      121 spaqtvgdvr aakarhgfsg ipvthsgrlg grlegivtsr didflgesdh gtrlaqdgvg
      181 tvapqvmtkr kdlvvapagv tlkeaneilq rskkgklpiv nerdelvaii artdlgknre
      241 hplaskdark qllcgaalgt rgddryrlel laqagadlvl ldssqgnsty qvamiqyiks
      301 rypqlqvigg nvvtaaqakn lidagvdalr vgmgcgppai aleggacgrp qgtavyrvae
      361 yarrfgvpvi adggvrtvgh avkalalgas tvmlgsllaa aaeapellfp eggrlrpprs
      421 lgppdaergp gqgrccseae avpggsavpp rgsiphlvpy liagiqhgcr digarslsal
      481 rsmmysgelk ferrtaaaqi eggvhglhsv tvlpctrsgs aeegahgrap paspapcpgt
      541 pglpprcppg tpgsggglrg gctp
//
LOCUS       XP_053939205             562 aa            linear   VRT 09-MAR-2023
DEFINITION  inosine-5'-monophosphate dehydrogenase 1 isoform X6 [Cuculus
            canorus].
ACCESSION   XP_053939205
VERSION     XP_053939205.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083230.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..562
                     /product="inosine-5'-monophosphate dehydrogenase 1 isoform
                     X6"
                     /calculated_mol_wt=58324
     Region          21..507
                     /region_name="PTZ00314"
                     /note="inosine-5'-monophosphate dehydrogenase;
                     Provisional"
                     /db_xref="CDD:240355"
     CDS             1..562
                     /gene="IMPDH1"
                     /coded_by="XM_054083230.1:126..1814"
                     /db_xref="GeneID:128853960"
ORIGIN      
        1 mgegepsmad ylisggtgyv pedglsaqql lsadglsydd flilpgfidf tadevdltsa
       61 ltrkltlktp lvssprdsvt eadvaiamal mggigiihhn ctpefqanev rkvkkfeqgf
      121 itdpvvmspa qtvgdvraak arhgfsgipv thsgrlggrl egivtsrdid flgesdhgtr
      181 laqvmtkrkd lvvapagvtl keaneilqrs kkgklpivne rdelvaiiar tdlgknrehp
      241 laskdarkql lcgaalgtrg ddryrlella qagadlvlld ssqgnstyqv amiqyiksry
      301 pqlqviggnv vtaaqaknli dagvdalrvg mgcgppaial eggacgrpqg tavyrvaeya
      361 rrfgvpviad ggvrtvghav kalalgastv mlgsllaaaa eapellfpeg grlrpprslg
      421 ppdaergpgq grccseaeav pggsavpprg siphlvpyli agiqhgcrdi garslsalrs
      481 mmysgelkfe rrtaaaqieg gvhglhsvtv lpctrsgsae egahgrappa spapcpgtpg
      541 lpprcppgtp gsggglrggc tp
//
LOCUS       XP_053939213             561 aa            linear   VRT 09-MAR-2023
DEFINITION  inosine-5'-monophosphate dehydrogenase 1 isoform X7 [Cuculus
            canorus].
ACCESSION   XP_053939213
VERSION     XP_053939213.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083238.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..561
                     /product="inosine-5'-monophosphate dehydrogenase 1 isoform
                     X7"
                     /calculated_mol_wt=58081
     Region          21..506
                     /region_name="PTZ00314"
                     /note="inosine-5'-monophosphate dehydrogenase;
                     Provisional"
                     /db_xref="CDD:240355"
     CDS             1..561
                     /gene="IMPDH1"
                     /coded_by="XM_054083238.1:127..1812"
                     /db_xref="GeneID:128853960"
ORIGIN      
        1 mgegepsmad ylisggtgyv pedglsaqql lsadglsydd flilpgfidf tadevdltsa
       61 ltrkltlktp lvssprdsvt eadvaiamal mggigiihhn ctpefqanev rkvkkfeqgf
      121 itdpvvmspa qtvgdvraak arhgfsgipv thsgrlggrl egivtsrdid flgesdhgtr
      181 laqdgvgtva pqvmtkrkdl vvapagvtlk eaneilqrsk kgklpivner delvaiiart
      241 dlgknrehpl askdarkqll cgaalgtrgd dryrlellaq agadlvllva miqyiksryp
      301 qlqviggnvv taaqaknlid agvdalrvgm gcgppaiale ggacgrpqgt avyrvaeyar
      361 rfgvpviadg gvrtvghavk alalgastvm lgsllaaaae apellfpegg rlrpprslgp
      421 pdaergpgqg rccseaeavp ggsavpprgs iphlvpylia giqhgcrdig arslsalrsm
      481 mysgelkfer rtaaaqiegg vhglhsvtvl pctrsgsaee gahgrappas papcpgtpgl
      541 pprcppgtpg sggglrggct p
//
LOCUS       XP_053939218             557 aa            linear   VRT 09-MAR-2023
DEFINITION  inosine-5'-monophosphate dehydrogenase 1 isoform X8 [Cuculus
            canorus].
ACCESSION   XP_053939218
VERSION     XP_053939218.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083243.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..557
                     /product="inosine-5'-monophosphate dehydrogenase 1 isoform
                     X8"
                     /calculated_mol_wt=57713
     Region          21..502
                     /region_name="PTZ00314"
                     /note="inosine-5'-monophosphate dehydrogenase;
                     Provisional"
                     /db_xref="CDD:240355"
     CDS             1..557
                     /gene="IMPDH1"
                     /coded_by="XM_054083243.1:126..1799"
                     /db_xref="GeneID:128853960"
ORIGIN      
        1 mgegepsmad ylisggtgyv pedglsaqql lsadglsydd flilpgfidf tadevdltsa
       61 ltrkltlktp lvssprdsvt eadvaiamal mggigiihhn ctpefqanek feqgfitdpv
      121 vmspaqtvgd vraakarhgf sgipvthsgr lggrlegivt srdidflges dhgtrlaqvm
      181 tkrkdlvvap agvtlkeane ilqrskkgkl pivnerdelv aiiartdlgk nrehplaskd
      241 arkqllcgaa lgtrgddryr lellaqagad lvlldssqgn styqvamiqy iksrypqlqv
      301 iggnvvtaaq aknlidagvd alrvgmgcgp paialeggac grpqgtavyr vaeyarrfgv
      361 pviadggvrt vghavkalal gastvmlgsl laaaaeapel lfpeggrlrp prslgppdae
      421 rgpgqgrccs eaeavpggsa vpprgsiphl vpyliagiqh gcrdigarsl salrsmmysg
      481 elkferrtaa aqieggvhgl hsvtvlpctr sgsaeegahg rappaspapc pgtpglpprc
      541 ppgtpgsggg lrggctp
//
LOCUS       XP_053939221             513 aa            linear   VRT 09-MAR-2023
DEFINITION  inosine-5'-monophosphate dehydrogenase 1 isoform X9 [Cuculus
            canorus].
ACCESSION   XP_053939221
VERSION     XP_053939221.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083246.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..513
                     /product="inosine-5'-monophosphate dehydrogenase 1 isoform
                     X9"
                     /calculated_mol_wt=54043
     Region          21..509
                     /region_name="PTZ00314"
                     /note="inosine-5'-monophosphate dehydrogenase;
                     Provisional"
                     /db_xref="CDD:240355"
     CDS             1..513
                     /gene="IMPDH1"
                     /coded_by="XM_054083246.1:126..1667"
                     /db_xref="GeneID:128853960"
ORIGIN      
        1 mgegepsmad ylisggtgyv pedglsaqql lsadglsydd flilpgfidf tadevdltsa
       61 ltrkltlktp lvssprdsvt eadvaiamal mggigiihhn ctpefqanev rkvkkfeqgf
      121 itdpvvmspa qtvgdvraak arhgfsgipv thsgrlggrl egivtsrdid flgesdhgtr
      181 laqvmtkrkd lvvapagvtl keaneilqrs kkgklpivne rdelvaiiar tdlgknrehp
      241 laskdarkql lcgaalgtrg ddryrlella qagadlvlld ssqgnstyqv amiqyiksry
      301 pqlqviggnv vtaaqaknli dagvdalrvg mgcgppaial eggacgrpqg tavyrvaeya
      361 rrfgvpviad ggvrtvghav kalalgastv mlgsllaaaa eapellfpeg grlrpprslg
      421 ppdaergpgq grccseaeav pggsavpprg siphlvpyli agiqhgcrdi garslsalrs
      481 mmysgelkfe rrtaaaqieg gvhglhsyek rlr
//
LOCUS       XP_053939226             411 aa            linear   VRT 09-MAR-2023
DEFINITION  inosine-5'-monophosphate dehydrogenase 1 isoform X10 [Cuculus
            canorus].
ACCESSION   XP_053939226
VERSION     XP_053939226.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083251.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..411
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..411
                     /product="inosine-5'-monophosphate dehydrogenase 1 isoform
                     X10"
                     /calculated_mol_wt=43181
     Region          21..>403
                     /region_name="PTZ00314"
                     /note="inosine-5'-monophosphate dehydrogenase;
                     Provisional"
                     /db_xref="CDD:240355"
     CDS             1..411
                     /gene="IMPDH1"
                     /coded_by="XM_054083251.1:126..1361"
                     /db_xref="GeneID:128853960"
ORIGIN      
        1 mgegepsmad ylisggtgyv pedglsaqql lsadglsydd flilpgfidf tadevdltsa
       61 ltrkltlktp lvssprdsvt eadvaiamal mggigiihhn ctpefqanev rkvkkfeqgf
      121 itdpvvmspa qtvgdvraak arhgfsgipv thsgrlggrl egivtsrdid flgesdhgtr
      181 laqdgvgtva pqvmtkrkdl vvapagvtlk eaneilqrsk kgklpivner delvaiiart
      241 dlgknrehpl askdarkqll cgaalgtrgd dryrlellaq agadlvllds sqgnstyqva
      301 miqyiksryp qlqviggnvv taaqaknlid agvdalrvgm gcgppaiale ggacgrpqgt
      361 avyrvaeyar rfgvpviadg gvrtvghavk alalgastvm lgspgrcrss q
//
LOCUS       XP_053939237             508 aa            linear   VRT 09-MAR-2023
DEFINITION  inosine-5'-monophosphate dehydrogenase 1 isoform X11 [Cuculus
            canorus].
ACCESSION   XP_053939237
VERSION     XP_053939237.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083262.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..508
                     /product="inosine-5'-monophosphate dehydrogenase 1 isoform
                     X11"
                     /calculated_mol_wt=53432
     Region          21..504
                     /region_name="PTZ00314"
                     /note="inosine-5'-monophosphate dehydrogenase;
                     Provisional"
                     /db_xref="CDD:240355"
     CDS             1..508
                     /gene="IMPDH1"
                     /coded_by="XM_054083262.1:126..1652"
                     /db_xref="GeneID:128853960"
ORIGIN      
        1 mgegepsmad ylisggtgyv pedglsaqql lsadglsydd flilpgfidf tadevdltsa
       61 ltrkltlktp lvssprdsvt eadvaiamal mggigiihhn ctpefqanek feqgfitdpv
      121 vmspaqtvgd vraakarhgf sgipvthsgr lggrlegivt srdidflges dhgtrlaqvm
      181 tkrkdlvvap agvtlkeane ilqrskkgkl pivnerdelv aiiartdlgk nrehplaskd
      241 arkqllcgaa lgtrgddryr lellaqagad lvlldssqgn styqvamiqy iksrypqlqv
      301 iggnvvtaaq aknlidagvd alrvgmgcgp paialeggac grpqgtavyr vaeyarrfgv
      361 pviadggvrt vghavkalal gastvmlgsl laaaaeapel lfpeggrlrp prslgppdae
      421 rgpgqgrccs eaeavpggsa vpprgsiphl vpyliagiqh gcrdigarsl salrsmmysg
      481 elkferrtaa aqieggvhgl hsyekrlr
//
LOCUS       XP_053939259             759 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA-binding protein 28 [Cuculus canorus].
ACCESSION   XP_053939259
VERSION     XP_053939259.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083284.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..759
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..759
                     /product="RNA-binding protein 28"
                     /calculated_mol_wt=84325
     Region          9..85
                     /region_name="RRM_SF"
                     /note="RNA recognition motif (RRM) superfamily; cl17169"
                     /db_xref="CDD:473069"
     Region          117..192
                     /region_name="RRM2_RBM28_like"
                     /note="RNA recognition motif 2 (RRM2) found in RNA-binding
                     protein 28 (RBM28) and similar proteins; cd12414"
                     /db_xref="CDD:409848"
     Region          358..439
                     /region_name="RRM3_RBM28_like"
                     /note="RNA recognition motif 3 (RRM3) found in RNA-binding
                     protein 28 (RBM28) and similar proteins; cd12415"
                     /db_xref="CDD:409849"
     Region          509..598
                     /region_name="RRM_SF"
                     /note="RNA recognition motif (RRM) superfamily; cl17169"
                     /db_xref="CDD:473069"
     CDS             1..759
                     /gene="RBM28"
                     /coded_by="XM_054083284.1:212..2491"
                     /db_xref="GeneID:128853974"
ORIGIN      
        1 maarsdgrtv lvrglpaaat aaqleslfgg fgplrrcfvv tekgaprcrg fgyvtfslae
       61 daaralrapp algghqlalt larprlragg aqtqgspkat tappkpkkpr gvskkarliv
      121 rnlsfkcsea elkdlfspfg svlevnipkk pdgkmrgfaf vqmknvpeaa ralrglnlke
      181 ikgrpvavdw avakdkfrat qgegfggerg gegeeegeke eeeeeekeee eeekeeekee
      241 eeeeeeeeee eegeekekqk ekaagkvkmk mrtkmkalps rgrksseeee eeeeeeeaak
      301 eadseeeeen eeedeeeeee eedgdeeede eeeeggaaph kqprtggaqr psdvkegrtl
      361 firnlsfete eealgaaler fgalsyvrvv lhpdtehpkg cafaqfrtge aaqeclrvaq
      421 dpegaglrvd grrlrvdvav treeaqrlrr egrprsggtr nlhlaregli ragtkaaegv
      481 saadmakrar feelkhqklr dpnifvsrtr lcvhnlpkrv dsaalrrllr rlpaggaplh
      541 vkecrvmreq rgqgpslgfa fvelgahaea laalralnnn pnlfgaskrp ivefsledrr
      601 klrlkeqraq rsllklkpqp papaappqpp htrrppvsse appgppqatp gtpwcgfrta
      661 aqpervelpd gttrrkvlpl pshrgakirk rdkgkvkppp pkkpmkgrqr rkeqhpappq
      721 karrggaear fnelverykr rilggtegpp tkrskwfed
//
LOCUS       XP_053939270             380 aa            linear   VRT 09-MAR-2023
DEFINITION  cytoplasmic protein NCK2 [Cuculus canorus].
ACCESSION   XP_053939270
VERSION     XP_053939270.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083295.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..380
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..380
                     /product="cytoplasmic protein NCK2"
                     /calculated_mol_wt=42882
     Region          2..59
                     /region_name="SH3_Nck2_1"
                     /note="First Src Homology 3 domain of Nck2 adaptor
                     protein; cd11899"
                     /db_xref="CDD:212832"
     Site            order(13,16..17,19..20,36..38,50,52..55)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212832"
     Region          114..168
                     /region_name="SH3_Nck2_2"
                     /note="Second Src Homology 3 domain of Nck2 adaptor
                     protein; cd11902"
                     /db_xref="CDD:212835"
     Site            order(120,122,125,129,147..148,161,163..164)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212835"
     Region          198..256
                     /region_name="SH3_Nck2_3"
                     /note="Third Src Homology 3 domain of Nck2 adaptor
                     protein; cd11903"
                     /db_xref="CDD:212836"
     Site            order(204,206,209,213,233..234,248,250..251)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212836"
     Site            order(235,249..250,252..254)
                     /site_type="other"
                     /note="Lim4 domain interface [polypeptide binding]"
                     /db_xref="CDD:212836"
     Region          283..380
                     /region_name="SH2_Nck2"
                     /note="Src homology 2 (SH2) domain found in Nck; cd10409"
                     /db_xref="CDD:198272"
     Site            order(292,311,313..315,321,334)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:198272"
     Site            order(333,344,347,364..366)
                     /site_type="other"
                     /note="hydrophobic binding pocket [polypeptide binding]"
                     /db_xref="CDD:198272"
     CDS             1..380
                     /gene="NCK2"
                     /coded_by="XM_054083295.1:250..1392"
                     /db_xref="GeneID:104056632"
ORIGIN      
        1 mteeviviak wdytaqqdqe ldikknerlw llddsktwwr vrnaanktgy vpsnyverkn
       61 slkkgslvkn lkdtlglgkt krktsardas ptpstdaeyp sngssadriy dlnipayvkf
      121 ayvaeredel slvkgsrviv mekcsdgwwr gsyngqigwf psnyvveeve eatadspsfl
      181 slrkgasmsn gqgtkvlhiv qtlypfssvt eeelnfekge tmeviekpen dpewwkckns
      241 rgqiglvpkn yvviisdgpt intshppqis ytgpsstgrf agrewyygnv trhqaecaln
      301 ergvegdflv rdsesspsdf svslkasgkn khfkvqlvdn vycigqrrfn tmdelvehyk
      361 kapiftsehg eklylvkalq
//
LOCUS       XP_009567233             928 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription initiation factor TFIID subunit 3 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009567233
VERSION     XP_009567233.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568938.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..928
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..928
                     /product="transcription initiation factor TFIID subunit 3
                     isoform X1"
                     /calculated_mol_wt=102904
     Region          3..94
                     /region_name="HFD_TAF3"
                     /note="histone-fold domain found in transcription
                     initiation factor TFIID subunit 3 (TAF3) and similar
                     proteins; cd22916"
                     /db_xref="CDD:467041"
     Site            order(3,5,7,9,11..12,15..16,18..19,23..29,32..33,36..37,
                     40..41,44,47,50..52,54..58,62..64,68,72,93..94)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:467041"
     Site            order(3,6..7,9..10,13,16..17,21,23..27,30,38..39,42..43,
                     45,50,61,63,66,70,77,79..81,83..84,87..88,91..93)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467041"
     Region          <818..911
                     /region_name="TNG2"
                     /note="Chromatin remodeling protein, contains PhD zinc
                     finger [Chromatin structure and dynamics]; COG5034"
                     /db_xref="CDD:227367"
     Region          866..911
                     /region_name="PHD_TAF3"
                     /note="PHD finger found in transcription initiation factor
                     TFIID subunit 3 (TAF3); cd15522"
                     /db_xref="CDD:276997"
     Site            order(866,878..882,886,906)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:276997"
     CDS             1..928
                     /gene="TAF3"
                     /coded_by="XM_009568938.2:129..2915"
                     /db_xref="GeneID:104066349"
ORIGIN      
        1 mcetysrwll rvsvaqicqa lgwdsvqvsa cdlltdvlqr ylqglgrgch rycelygrtd
       61 pilddvgdaf klmgvnlhel edyihniepv tfahqipsfp vsknnvlqfp qpgskdaeer
      121 kdyipdympp ivssqeeeee eqvptdggts aeamqvplee eedmeedeai ndenylskrp
      181 lespdaeefp pvkrpklsis kgdsldgale preplssint qkvppmlspv hvqdstdlap
      241 pspeppmlap iaksqvptpk tsetkplvpk tksktsspgq ktkspkttps pvvtgspirs
      301 pktgpkekks pgrakspksp kspkvpthvp pppvkpetps rppvaaisdk igkeniqvkq
      361 gqtppepapk paienqpkkv pvmdktidds idaviaraca erepdpfefs sgsesegeif
      421 tspkrlsvse attpkpsvsa nstnkagatp ippsggtsss diswtmddsi devirkanmg
      481 tpanpptnfp yfsspsaspp tpepllkvye ektklassve vkkklkkelk tkmkkkekqk
      541 ekdkeknkek nkekeknkek dkdkegnket kfqwkellkd deldpykfkl kdfedadtkv
      601 klkegntkke rdkhkdkkke kekgkkdkdk kdkeklkdkg kedkvkapsa plvlppkems
      661 lplfstptam rlpgmlpsmp pvlpeklfed kekpkekkkd kkekkkkker ekdkekekke
      721 kekerkekek kekekekhkh ekikvepvap spspviprlt lrvgagqdki viskvvpape
      781 akpatpvsrp ktpppvpspv papvhvtppp apapappqtt vspvlippps paisaaggsk
      841 apvrsvvtet vstyvirdew gnqiwicpgc nkpddgspmi gcddcddwyh wpcvgittap
      901 peemqwfcsk cankkkdkkh kkrkhrah
//
LOCUS       XP_053939288             775 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription initiation factor TFIID subunit 3 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053939288
VERSION     XP_053939288.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083313.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..775
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..775
                     /product="transcription initiation factor TFIID subunit 3
                     isoform X2"
                     /calculated_mol_wt=85657
     Region          713..758
                     /region_name="PHD_TAF3"
                     /note="PHD finger found in transcription initiation factor
                     TFIID subunit 3 (TAF3); cd15522"
                     /db_xref="CDD:276997"
     Site            order(713,725..729,733,753)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:276997"
     CDS             1..775
                     /gene="TAF3"
                     /coded_by="XM_054083313.1:171..2498"
                     /db_xref="GeneID:104066349"
ORIGIN      
        1 mqvpleeeed meedeainde nylskrples pdaeefppvk rpklsiskgd sldgalepre
       61 plssintqkv ppmlspvhvq dstdlappsp eppmlapiak sqvptpktse tkplvpktks
      121 ktsspgqktk spkttpspvv tgspirspkt gpkekkspgr akspkspksp kvpthvpppp
      181 vkpetpsrpp vaaisdkigk eniqvkqgqt ppepapkpai enqpkkvpvm dktiddsida
      241 viaracaere pdpfefssgs esegeiftsp krlsvseatt pkpsvsanst nkagatpipp
      301 sggtsssdis wtmddsidev irkanmgtpa npptnfpyfs spsaspptpe pllkvyeekt
      361 klassvevkk klkkelktkm kkkekqkekd keknkeknke keknkekdkd kegnketkfq
      421 wkellkddel dpykfklkdf edadtkvklk egntkkerdk hkdkkkekek gkkdkdkkdk
      481 eklkdkgked kvkapsaplv lppkemslpl fstptamrlp gmlpsmppvl peklfedkek
      541 pkekkkdkke kkkkkerekd kekekkekek erkekekkek ekekhkheki kvepvapsps
      601 pviprltlrv gagqdkivis kvvpapeakp atpvsrpktp ppvpspvpap vhvtpppapa
      661 pappqttvsp vlipppspai saaggskapv rsvvtetvst yvirdewgnq iwicpgcnkp
      721 ddgspmigcd dcddwyhwpc vgittappee mqwfcskcan kkkdkkhkkr khrah
//
LOCUS       XP_053939303             934 aa            linear   VRT 09-MAR-2023
DEFINITION  chromosome alignment-maintaining phosphoprotein 1 [Cuculus
            canorus].
ACCESSION   XP_053939303
VERSION     XP_053939303.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083328.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..934
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..934
                     /product="chromosome alignment-maintaining phosphoprotein
                     1"
                     /calculated_mol_wt=103605
     Region          <116..340
                     /region_name="PspC_subgroup_2"
                     /note="pneumococcal surface protein PspC, LPXTG-anchored
                     form; NF033839"
                     /db_xref="CDD:468202"
     Region          <174..>714
                     /region_name="PRK10263"
                     /note="DNA translocase FtsK; Provisional"
                     /db_xref="CDD:236669"
     Region          835..855
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275370"
     Region          864..884
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          891..910
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..934
                     /gene="CHAMP1"
                     /coded_by="XM_054083328.1:178..2982"
                     /db_xref="GeneID:104056626"
ORIGIN      
        1 mdmmqilrkt terlecdhcn frgtdyeniq ihmgtihpey cdemdaaglg klifyqksak
       61 lfhchkcfft skmycnvyyh itaqhavpek wneerkeqve gdsdsskksv tsepqkptls
      121 pelsrsepva spklqkssas pepqksqats seseksgkam spdpgksaqa aspdpeklas
      181 avspdsekts asvspdpqkp spavspdpqk pspavspdpq kpapavspep rrhspamspe
      241 prrhspavsp eprrhspavs peprryspav spepkkptpa vspeprryap agspeprrhp
      301 qmrrpasass penqrpapav speswrpgpt vspepwrstp hevqksstvs pwapkpamsv
      361 svesrrsape prrpgpvvsp eprrfvsdsw kstsfsesqk stlvssepwk pissvypegw
      421 kpvlspdtwk hsppvspelr ksshtvssdt wkpsfftevr kpgasvspes wklsesrksm
      481 yfsetqkstc aassevqkra hfpeprkral fpesrksnpt istdvqkrav fsepqsqist
      541 salstegqkh tlcseaqksa lvssevqkhg lfseaqklap issevqepss fpesqkstsp
      601 evqkhglfte sqkptpsvsp etpkqavftd sqksavspdi qkhalfsemq kpaaalssdv
      661 qrhaettvps emqknilfse phksapgfss epqtpsesge sdflshsldd qkplddlfsq
      721 deqsilakes pedmlyscpk kkpkkenqen sdselnitec gktemdsmei keqesnsdqe
      781 qydmesadyg keskidaatp mqpqcvlqft eekeafisee eiakymkrgk gkyyckiccc
      841 ramkkgavlh hlvnkhnvqs pykckicgka fllesllknh vaahgqsllk cprcnfesnf
      901 prgfkkhlth cqnrhsddtp kkhldnlepl eeqi
//
LOCUS       XP_053939314             934 aa            linear   VRT 09-MAR-2023
DEFINITION  chromosome alignment-maintaining phosphoprotein 1 [Cuculus
            canorus].
ACCESSION   XP_053939314
VERSION     XP_053939314.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083339.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..934
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..934
                     /product="chromosome alignment-maintaining phosphoprotein
                     1"
                     /calculated_mol_wt=103605
     Region          <116..340
                     /region_name="PspC_subgroup_2"
                     /note="pneumococcal surface protein PspC, LPXTG-anchored
                     form; NF033839"
                     /db_xref="CDD:468202"
     Region          <174..>714
                     /region_name="PRK10263"
                     /note="DNA translocase FtsK; Provisional"
                     /db_xref="CDD:236669"
     Region          835..855
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275370"
     Region          864..884
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          891..910
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..934
                     /gene="CHAMP1"
                     /coded_by="XM_054083339.1:81..2885"
                     /db_xref="GeneID:104056626"
ORIGIN      
        1 mdmmqilrkt terlecdhcn frgtdyeniq ihmgtihpey cdemdaaglg klifyqksak
       61 lfhchkcfft skmycnvyyh itaqhavpek wneerkeqve gdsdsskksv tsepqkptls
      121 pelsrsepva spklqkssas pepqksqats seseksgkam spdpgksaqa aspdpeklas
      181 avspdsekts asvspdpqkp spavspdpqk pspavspdpq kpapavspep rrhspamspe
      241 prrhspavsp eprrhspavs peprryspav spepkkptpa vspeprryap agspeprrhp
      301 qmrrpasass penqrpapav speswrpgpt vspepwrstp hevqksstvs pwapkpamsv
      361 svesrrsape prrpgpvvsp eprrfvsdsw kstsfsesqk stlvssepwk pissvypegw
      421 kpvlspdtwk hsppvspelr ksshtvssdt wkpsfftevr kpgasvspes wklsesrksm
      481 yfsetqkstc aassevqkra hfpeprkral fpesrksnpt istdvqkrav fsepqsqist
      541 salstegqkh tlcseaqksa lvssevqkhg lfseaqklap issevqepss fpesqkstsp
      601 evqkhglfte sqkptpsvsp etpkqavftd sqksavspdi qkhalfsemq kpaaalssdv
      661 qrhaettvps emqknilfse phksapgfss epqtpsesge sdflshsldd qkplddlfsq
      721 deqsilakes pedmlyscpk kkpkkenqen sdselnitec gktemdsmei keqesnsdqe
      781 qydmesadyg keskidaatp mqpqcvlqft eekeafisee eiakymkrgk gkyyckiccc
      841 ramkkgavlh hlvnkhnvqs pykckicgka fllesllknh vaahgqsllk cprcnfesnf
      901 prgfkkhlth cqnrhsddtp kkhldnlepl eeqi
//
LOCUS       XP_053939329             217 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853977 [Cuculus canorus].
ACCESSION   XP_053939329
VERSION     XP_053939329.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083354.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..217
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..217
                     /product="uncharacterized protein LOC128853977"
                     /calculated_mol_wt=23880
     CDS             1..217
                     /gene="LOC128853977"
                     /coded_by="XM_054083354.1:594..1247"
                     /db_xref="GeneID:128853977"
ORIGIN      
        1 mdvssegrgp rpgkdselrc aygyygtalw itdpldlktc llsipqvlfr gekyflrrls
       61 tlllstitsw imqamrvasc lqeprplsel svlcvliild vllemlqiqh lvlfgtfsnq
      121 sqqrkvtcsg vltfkcfcgy qlssftlavs kpqtpfpfek vcqgeddsli thilsvspld
      181 ntrkcvhgll lhqaavvihs tsagtgiaek pwltagt
//
LOCUS       XP_053939343             238 aa            linear   VRT 09-MAR-2023
DEFINITION  DCN1-like protein 5 isoform X1 [Cuculus canorus].
ACCESSION   XP_053939343
VERSION     XP_053939343.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083368.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..238
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..238
                     /product="DCN1-like protein 5 isoform X1"
                     /calculated_mol_wt=27303
     Region          121..231
                     /region_name="Cullin_binding"
                     /note="Cullin binding; pfam03556"
                     /db_xref="CDD:460971"
     CDS             1..238
                     /gene="DCUN1D5"
                     /coded_by="XM_054083368.1:36..752"
                     /db_xref="GeneID:104064705"
ORIGIN      
        1 mpvkkkrkss gpaaatatdd tglkrcklss ccrsqasgkv vsgeehfssk kclawfyeya
       61 gpdevvgpeg mekfcedigv epeniimlvl awkleaesmg fftkeewlkg mtslqcdcte
      121 klqskfdflr sqlndissfk niyryafdfa rdkdqrsldi dtaksmlall lgrtwplfsv
      181 fyqyleqsky rvmnkdqwyn vlefsrtvha dlsnydedga wpvlldefve wqkvrqas
//
LOCUS       XP_053939352             224 aa            linear   VRT 09-MAR-2023
DEFINITION  DCN1-like protein 5 isoform X2 [Cuculus canorus].
ACCESSION   XP_053939352
VERSION     XP_053939352.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083377.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..224
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..224
                     /product="DCN1-like protein 5 isoform X2"
                     /calculated_mol_wt=25820
     Region          107..217
                     /region_name="Cullin_binding"
                     /note="Cullin binding; pfam03556"
                     /db_xref="CDD:460971"
     CDS             1..224
                     /gene="DCUN1D5"
                     /coded_by="XM_054083377.1:193..867"
                     /db_xref="GeneID:104064705"
ORIGIN      
        1 mgrdtspldq aaqsssccrs qasgkvvsge ehfsskkcla wfyeyagpde vvgpegmekf
       61 cedigvepen iimlvlawkl eaesmgfftk eewlkgmtsl qcdcteklqs kfdflrsqln
      121 dissfkniyr yafdfardkd qrsldidtak smlalllgrt wplfsvfyqy leqskyrvmn
      181 kdqwynvlef srtvhadlsn ydedgawpvl ldefvewqkv rqas
//
LOCUS       XP_053939365              98 aa            linear   VRT 09-MAR-2023
DEFINITION  cell cycle regulator of non-homologous end joining-like [Cuculus
            canorus].
ACCESSION   XP_053939365
VERSION     XP_053939365.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083390.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..98
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..98
                     /product="cell cycle regulator of non-homologous end
                     joining-like"
                     /calculated_mol_wt=9890
     CDS             1..98
                     /gene="LOC128853980"
                     /coded_by="XM_054083390.1:42..338"
                     /db_xref="GeneID:128853980"
ORIGIN      
        1 matggpersr peppaatlrc mseaelleaa lavlaeagtp rgragagpqr ggaagprepp
       61 pleapgaaaa eeprpapppa eapgrdddlr yvreiffs
//
LOCUS       XP_009567027             398 aa            linear   VRT 09-MAR-2023
DEFINITION  cyclin-A1 [Cuculus canorus].
ACCESSION   XP_009567027
VERSION     XP_009567027.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568732.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567027.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..398
                     /product="cyclin-A1"
                     /calculated_mol_wt=45232
     Region          67..124
                     /region_name="Cyclin_N2"
                     /note="Cyclin-A N-terminal APC/C binding region;
                     pfam16500"
                     /db_xref="CDD:465146"
     Region          110..271
                     /region_name="CYCLIN_CCNA1_rpt1"
                     /note="first cyclin box found in cyclin-A1 (CCNA1);
                     cd20560"
                     /db_xref="CDD:410263"
     Site            order(141,143..145,147..148,151,194,229,232..236,240..241,
                     254..255,258,261..262,265..266,269..271)
                     /site_type="other"
                     /note="putative CDK interface [polypeptide binding]"
                     /db_xref="CDD:410263"
     Region          275..397
                     /region_name="CYCLIN_CCNA1_rpt2"
                     /note="second cyclin box found in cyclin-A1 (CCNA1) and
                     similar proteins; cd20563"
                     /db_xref="CDD:410266"
     Site            order(278..279,282)
                     /site_type="other"
                     /note="putative CDK interface [polypeptide binding]"
                     /db_xref="CDD:410266"
     CDS             1..398
                     /gene="CCNA1"
                     /coded_by="XM_009568732.2:98..1294"
                     /db_xref="GeneID:104066161"
ORIGIN      
        1 mrrrgepcpa aprsrgrtvl gvlaengqqr pgsqganvvr rfsgsentfp atrkdelpnc
       61 mvnatskqaf aiyvdepeqk enynyqviee lepslceldt semtssihll lnlstgspmi
      121 vdtsfqshpk drmqdavtlt veeyaedihq ylreaevrfk pkpyymrkqp dittgmrail
      181 vdwlvevgee yklqaetlyl avnfldrfls cmsvlrgklq lvgtaallla skyeeiyppe
      241 vdefvyitdd tytkrqllrm ehlflkvlaf dltaptinqf llqyiqrqgv cmrtenfary
      301 laelsllead pflkylpsqt aaaayclany tvnrsfwpet laaftgysls eivpcltdlh
      361 kacldaphch lqaikekykc skymqvslle ppavlplq
//
LOCUS       XP_053939382             450 aa            linear   VRT 09-MAR-2023
DEFINITION  branched-chain-amino-acid aminotransferase, cytosolic isoform X1
            [Cuculus canorus].
ACCESSION   XP_053939382
VERSION     XP_053939382.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083407.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..450
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..450
                     /product="branched-chain-amino-acid aminotransferase,
                     cytosolic isoform X1"
                     /calculated_mol_wt=50732
     Region          78..442
                     /region_name="PRK13357"
                     /note="branched-chain amino acid aminotransferase;
                     Provisional"
                     /db_xref="CDD:237363"
     CDS             1..450
                     /gene="BCAT1"
                     /coded_by="XM_054083407.1:229..1581"
                     /db_xref="GeneID:104058536"
ORIGIN      
        1 mlhlqlfpfr ssfkwfccsq qrfhhdnwak hflqntykin vssclfqgcq necasggcsg
       61 etakhvtesf kasdliitps ttfkekpdps glvfgtvftd nmltiewsla sgwekplikp
      121 lenlslhpas sslhyaiepr gqteenlvpm lwlneytlfe gmkayrgvdg kirlfrptln
      181 mdrmvrsarr atlpcfdqne llecirklve vekewvpyst saslyirptl igtepslgvk
      241 kptkallyvi lspvgpyfas gsfnpislwa dpkyvrawkg gtgdcklggn ygssiyaqqe
      301 alefgcqqvl wlygedhqit evgtmnlfly winedgenel atppldgiil pgvtrqsild
      361 larnwgdfkv seryitmsdl tvaleenrvk emfgagtaci vcpiskilyk gkhlhiptme
      421 ngpqlttrfl nkltdiqygr edsdwamlvs
//
LOCUS       XP_053939394             450 aa            linear   VRT 09-MAR-2023
DEFINITION  branched-chain-amino-acid aminotransferase, cytosolic isoform X1
            [Cuculus canorus].
ACCESSION   XP_053939394
VERSION     XP_053939394.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083419.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..450
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..450
                     /product="branched-chain-amino-acid aminotransferase,
                     cytosolic isoform X1"
                     /calculated_mol_wt=50732
     Region          78..442
                     /region_name="PRK13357"
                     /note="branched-chain amino acid aminotransferase;
                     Provisional"
                     /db_xref="CDD:237363"
     CDS             1..450
                     /gene="BCAT1"
                     /coded_by="XM_054083419.1:267..1619"
                     /db_xref="GeneID:104058536"
ORIGIN      
        1 mlhlqlfpfr ssfkwfccsq qrfhhdnwak hflqntykin vssclfqgcq necasggcsg
       61 etakhvtesf kasdliitps ttfkekpdps glvfgtvftd nmltiewsla sgwekplikp
      121 lenlslhpas sslhyaiepr gqteenlvpm lwlneytlfe gmkayrgvdg kirlfrptln
      181 mdrmvrsarr atlpcfdqne llecirklve vekewvpyst saslyirptl igtepslgvk
      241 kptkallyvi lspvgpyfas gsfnpislwa dpkyvrawkg gtgdcklggn ygssiyaqqe
      301 alefgcqqvl wlygedhqit evgtmnlfly winedgenel atppldgiil pgvtrqsild
      361 larnwgdfkv seryitmsdl tvaleenrvk emfgagtaci vcpiskilyk gkhlhiptme
      421 ngpqlttrfl nkltdiqygr edsdwamlvs
//
LOCUS       XP_053939399             431 aa            linear   VRT 09-MAR-2023
DEFINITION  branched-chain-amino-acid aminotransferase, cytosolic isoform X2
            [Cuculus canorus].
ACCESSION   XP_053939399
VERSION     XP_053939399.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083424.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..431
                     /product="branched-chain-amino-acid aminotransferase,
                     cytosolic isoform X2"
                     /calculated_mol_wt=48460
     Region          78..423
                     /region_name="PRK13357"
                     /note="branched-chain amino acid aminotransferase;
                     Provisional"
                     /db_xref="CDD:237363"
     CDS             1..431
                     /gene="BCAT1"
                     /coded_by="XM_054083424.1:229..1524"
                     /db_xref="GeneID:104058536"
ORIGIN      
        1 mlhlqlfpfr ssfkwfccsq qrfhhdnwak hflqntykin vssclfqgcq necasggcsg
       61 etakhvtesf kasdliitps ttfkekpdps glvfgtvftd nmltiewsla sgwekplikp
      121 lenlslhpas sslhyaielf egmkayrgvd gkirlfrptl nmdrmvrsar ratlpcfdqn
      181 ellecirklv evekewvpys tsaslyirpt ligtepslgv kkptkallyv ilspvgpyfa
      241 sgsfnpislw adpkyvrawk ggtgdcklgg nygssiyaqq ealefgcqqv lwlygedhqi
      301 tevgtmnlfl ywinedgene latppldgii lpgvtrqsil dlarnwgdfk vseryitmsd
      361 ltvaleenrv kemfgagtac ivcpiskily kgkhlhiptm engpqlttrf lnkltdiqyg
      421 redsdwamlv s
//
LOCUS       XP_053939409             424 aa            linear   VRT 09-MAR-2023
DEFINITION  branched-chain-amino-acid aminotransferase, cytosolic isoform X3
            [Cuculus canorus].
ACCESSION   XP_053939409
VERSION     XP_053939409.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083434.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..424
                     /product="branched-chain-amino-acid aminotransferase,
                     cytosolic isoform X3"
                     /calculated_mol_wt=47421
     Region          52..416
                     /region_name="PRK13357"
                     /note="branched-chain amino acid aminotransferase;
                     Provisional"
                     /db_xref="CDD:237363"
     CDS             1..424
                     /gene="BCAT1"
                     /coded_by="XM_054083434.1:88..1362"
                     /db_xref="GeneID:104058536"
ORIGIN      
        1 mmhllmavsv frvfqqhtsf egcqnecasg gcsgetakhv tesfkasdli itpsttfkek
       61 pdpsglvfgt vftdnmltie wslasgwekp likplenlsl hpassslhya ieprgqteen
      121 lvpmlwlney tlfegmkayr gvdgkirlfr ptlnmdrmvr sarratlpcf dqnellecir
      181 klvevekewv pystsaslyi rptligteps lgvkkptkal lyvilspvgp yfasgsfnpi
      241 slwadpkyvr awkggtgdck lggnygssiy aqqealefgc qqvlwlyged hqitevgtmn
      301 lflywinedg enelatppld giilpgvtrq sildlarnwg dfkvseryit msdltvalee
      361 nrvkemfgag tacivcpisk ilykgkhlhi ptmengpqlt trflnkltdi qygredsdwa
      421 mlvs
//
LOCUS       XP_053939415             406 aa            linear   VRT 09-MAR-2023
DEFINITION  branched-chain-amino-acid aminotransferase, cytosolic isoform X4
            [Cuculus canorus].
ACCESSION   XP_053939415
VERSION     XP_053939415.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083440.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..406
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..406
                     /product="branched-chain-amino-acid aminotransferase,
                     cytosolic isoform X4"
                     /calculated_mol_wt=45290
     Region          34..398
                     /region_name="PRK13357"
                     /note="branched-chain amino acid aminotransferase;
                     Provisional"
                     /db_xref="CDD:237363"
     CDS             1..406
                     /gene="BCAT1"
                     /coded_by="XM_054083440.1:180..1400"
                     /db_xref="GeneID:104058536"
ORIGIN      
        1 mmkgcqneca sggcsgetak hvtesfkasd liitpsttfk ekpdpsglvf gtvftdnmlt
       61 iewslasgwe kplikplenl slhpassslh yaieprgqte enlvpmlwln eytlfegmka
      121 yrgvdgkirl frptlnmdrm vrsarratlp cfdqnellec irklveveke wvpystsasl
      181 yirptligte pslgvkkptk allyvilspv gpyfasgsfn pislwadpky vrawkggtgd
      241 cklggnygss iyaqqealef gcqqvlwlyg edhqitevgt mnlflywine dgenelatpp
      301 ldgiilpgvt rqsildlarn wgdfkvsery itmsdltval eenrvkemfg agtacivcpi
      361 skilykgkhl hiptmengpq lttrflnklt diqygredsd wamlvs
//
LOCUS       XP_053939430             433 aa            linear   VRT 09-MAR-2023
DEFINITION  integral membrane protein GPR180 isoform X1 [Cuculus canorus].
ACCESSION   XP_053939430
VERSION     XP_053939430.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083455.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..433
                     /product="integral membrane protein GPR180 isoform X1"
                     /calculated_mol_wt=48891
     Region          136..398
                     /region_name="GpcrRhopsn4"
                     /note="Rhodopsin-like GPCR transmembrane domain;
                     pfam10192"
                     /db_xref="CDD:462989"
     CDS             1..433
                     /gene="GPR180"
                     /coded_by="XM_054083455.1:45..1346"
                     /db_xref="GeneID:104054875"
ORIGIN      
        1 mrwrllwplw llcgaaaktl rggfasaaar leparpvarf qfhgdhavlc vriknvavav
       61 tkaarlhlfq aqewqklqng iqdhsctdkf skaqltmtvn hteqnltvsq ipypetwyvf
      121 yvdkftceen ysesediqfe mvllnpdaeg npldhfsage sglhefffll vlayfvtaci
      181 yaqslwqtik krgpmhtvlk vltialllqa gsafanylhf ssyskdgigv pfmgslaelc
      241 divsqiqmly lllslcmgwt igrmkkshgr plqwdstpts tgiavvvvva qsflliweqf
      301 edanhhsyhs hhglasglli glrvclalsl aaslyqiitv erstlkrefy itfakacilw
      361 flchpclati svifreyqre kiitmgvilc qcismvilyr lflshslywe vsslssvtlp
      421 ltvssghknr hrf
//
LOCUS       XP_053939437             380 aa            linear   VRT 09-MAR-2023
DEFINITION  integral membrane protein GPR180 isoform X2 [Cuculus canorus].
ACCESSION   XP_053939437
VERSION     XP_053939437.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083462.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..380
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..380
                     /product="integral membrane protein GPR180 isoform X2"
                     /calculated_mol_wt=42959
     Region          83..345
                     /region_name="GpcrRhopsn4"
                     /note="Rhodopsin-like GPCR transmembrane domain;
                     pfam10192"
                     /db_xref="CDD:462989"
     CDS             1..380
                     /gene="GPR180"
                     /coded_by="XM_054083462.1:48..1190"
                     /db_xref="GeneID:104054875"
ORIGIN      
        1 mrwrllwplw llcgaaaktl rggfasaaar leparpvarf qfhvtvnhte qnltvsqipy
       61 petwyvfyvd kftceenyse sediqfemvl lnpdaegnpl dhfsagesgl hefffllvla
      121 yfvtaciyaq slwqtikkrg pmhtvlkvlt ialllqagsa fanylhfssy skdgigvpfm
      181 gslaelcdiv sqiqmlylll slcmgwtigr mkkshgrplq wdstptstgi avvvvvaqsf
      241 lliweqfeda nhhsyhshhg lasglliglr vclalslaas lyqiitvers tlkrefyitf
      301 akacilwflc hpclatisvi freyqrekii tmgvilcqci smvilyrlfl shslywevss
      361 lssvtlpltv ssghknrhrf
//
LOCUS       XP_009559190             430 aa            linear   VRT 09-MAR-2023
DEFINITION  divergent protein kinase domain 2B isoform X1 [Cuculus canorus].
ACCESSION   XP_009559190
VERSION     XP_009559190.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560895.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..430
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..430
                     /product="divergent protein kinase domain 2B isoform X1"
                     /calculated_mol_wt=48670
     Region          208..387
                     /region_name="PIP49_C"
                     /note="Protein-kinase domain of FAM69; pfam12260"
                     /db_xref="CDD:463512"
     CDS             1..430
                     /gene="DIPK2B"
                     /coded_by="XM_009560895.2:186..1478"
                     /db_xref="GeneID:104059248"
ORIGIN      
        1 mghwiccfcm gvaellmlll vlalncnsst aatasptaph vkpsysfgrt flgldkcnac
       61 igtsmckkff keeirfdtwl sshlklppsy llsylgnytd dakswrmvdi trlttkyqhd
      121 radkricvsl lktktcsleh alrrthrfqk wlrakrltpd lvqglpspml rcpsqrlldr
      181 ivrryaevpd agsiymdhlt drdklrllyt lsvnshpill qifpdvegwp fprylgscgr
      241 lvvsastrpl rdfygaapev aadlalqlla vlrsmgtndl nyffyfthvn agtfgvfsng
      301 hlfirdastl giidkeegnq lidsqqeykd ifscltvdcq safvscnsir ekhslvmvcq
      361 ellpkllkgk flqpvqekid sflqhcaggf addqgineai amlaellkpl rscdsrfayr
      421 ypdckysdky
//
LOCUS       XP_053939457             366 aa            linear   VRT 09-MAR-2023
DEFINITION  divergent protein kinase domain 2B isoform X2 [Cuculus canorus].
ACCESSION   XP_053939457
VERSION     XP_053939457.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083482.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..366
                     /product="divergent protein kinase domain 2B isoform X2"
                     /calculated_mol_wt=41949
     Region          144..323
                     /region_name="PIP49_C"
                     /note="Protein-kinase domain of FAM69; pfam12260"
                     /db_xref="CDD:463512"
     CDS             1..366
                     /gene="DIPK2B"
                     /coded_by="XM_054083482.1:251..1351"
                     /db_xref="GeneID:104059248"
ORIGIN      
        1 mckkffkeei rfdtwlsshl klppsyllsy lgnytddaks wrmvditrlt tkyqhdradk
       61 ricvsllktk tcslehalrr thrfqkwlra krltpdlvqg lpspmlrcps qrlldrivrr
      121 yaevpdagsi ymdhltdrdk lrllytlsvn shpillqifp dvegwpfpry lgscgrlvvs
      181 astrplrdfy gaapevaadl alqllavlrs mgtndlnyff yfthvnagtf gvfsnghlfi
      241 rdastlgiid keegnqlids qqeykdifsc ltvdcqsafv scnsirekhs lvmvcqellp
      301 kllkgkflqp vqekidsflq hcaggfaddq gineaiamla ellkplrscd srfayrypdc
      361 kysdky
//
LOCUS       XP_053939463             907 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-tubulin complex component 3 [Cuculus canorus].
ACCESSION   XP_053939463
VERSION     XP_053939463.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083488.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..907
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..907
                     /product="gamma-tubulin complex component 3"
                     /calculated_mol_wt=103671
     Region          251..552
                     /region_name="GCP_N_terminal"
                     /note="Gamma tubulin complex component N-terminal;
                     pfam17681"
                     /db_xref="CDD:465456"
     Region          555..886
                     /region_name="GCP_C_terminal"
                     /note="Gamma tubulin complex component C-terminal;
                     pfam04130"
                     /db_xref="CDD:461187"
     CDS             1..907
                     /gene="TUBGCP3"
                     /coded_by="XM_054083488.1:173..2896"
                     /db_xref="GeneID:104056664"
ORIGIN      
        1 matpdqkspn vllqnlccri lgkseadaaq qfqyavrvig snfaptverd eflvaekikk
       61 elvrqrread aalfselyrk lgsqgilknk wsilylllsl sedprkqpnk vssyatlfaq
      121 alprdahstp yyyarpqslp lnyqdrnaqs aqssgsmgss gissislyal ngptptpqsl
      181 lpgqsyqapg igdclrqqlg srlawtltts qpslqsttsk gfpnavsrgv prsrregdts
      241 gsveiteanl vrdvlyvfqg idgktikmcn sencykvegk vnlskslrdt tsrlaelgwl
      301 hnkirkytdq rsldrafglv gqsfcaalhq elneyyrlls vlhsqlqled dqgvnlgles
      361 sltlrrllvw tydpkirlkt laalvdhcqg rkggelasav haytktgdpy mrslvqhilg
      421 lvshpvlnfl yrwiydgele dtyheffvas dptvktdrlw hdkytlrksm ipsfmtmeqs
      481 kkvlligksi nflhqvchdq tpstkviava ksaessrdaa dlftdlenaf qekidaayfe
      541 tskylldvln kkynllehmq amrrylllgq gdfirhlmdl lkpelarpat tlyqhnltgi
      601 letavratna qfdnpeilkr ldvrllevsp gdtgwdvfsl dyhvdgpiat vftrecmshy
      661 lrvfnflwra krmeyiltdi wkghmcnakl lknmpelsgv lhqchvlase mvhfihqmqy
      721 yitfevlecs wdelwnkvqq aqdldhiiaa hevfldtiia rclldsdsrv llnqlravfd
      781 qiielqntqd amyraaleel qlrlqfeerk kqrelegkwg vtaseeeeek krikefqdsi
      841 pkmcsqlril thfyqgivqq flvllttssd eslrflsfrl dfnehykare prlrvslgsr
      901 grrsshm
//
LOCUS       XP_053939473            2690 aa            linear   VRT 09-MAR-2023
DEFINITION  filamin-C isoform X1 [Cuculus canorus].
ACCESSION   XP_053939473
VERSION     XP_053939473.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083498.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2690
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2690
                     /product="filamin-C isoform X1"
                     /calculated_mol_wt=285980
     Region          17..141
                     /region_name="CH_FLNC_rpt1"
                     /note="first calponin homology (CH) domain found in
                     filamin-C (FLN-C) and similar proteins; cd21310"
                     /db_xref="CDD:409159"
     Site            order(18..23,29..30,33,37,79..82,87..90,92..93,96..97,99,
                     108..116,121,123..124,126..127,130..131,134)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409159"
     Region          151..259
                     /region_name="CH_SF"
                     /note="calponin homology (CH) domain superfamily; cl00030"
                     /db_xref="CDD:469584"
     Site            order(160,208,210..211,214..215,217,230..234,241,243..244,
                     246..247,250..251,254)
                     /site_type="other"
                     /note="actin binding site [polypeptide binding]"
                     /db_xref="CDD:409031"
     Region          270..366
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          370..466
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          469..563
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          567..656
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          662..756
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          759..858
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          862..958
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          963..1054
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1057..1146
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1150..1242
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1246..1342
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1345..1434
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1438..1531
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1534..1628
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1631..1731
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          <1749..1813
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1817..1906
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1999..2088
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          <2202..2266
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          2272..2360
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          2376..2455
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          2462..2552
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          2600..2689
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     CDS             1..2690
                     /gene="FLNC"
                     /coded_by="XM_054083498.1:727..8799"
                     /db_xref="GeneID:104061382"
ORIGIN      
        1 mnsnyevqtt eepeelpate kdlaedapwk kiqqntftrw cnehlkcvhk rigdlqrdls
       61 dglrlialle vlsqkkmgrk yhprpnfrqm klenvsvale flerehiklv sidskaivdg
      121 nlklilgliw tlilhysism piweeeeede arrqtpkqrl lgwiqnkvpq lpitnfhrdw
      181 rdgkalgalv dncapglcpd wenwdpaqpv qnareamqqa ddwlgvpqvi apeeivdpnv
      241 dehsvmtyls qfpkaklkpg aplrarqpqp traraygpgi ephgnvvlrp aqftvetlea
      301 gvgevlvyve dpeghteeak vvpnndkkrt ysvtyvpkvg glhkvtvlfa gqnidkspfg
      361 vnvamalgda skvtargpgl epvgnvankp tyfdiytaga gpgdvgvviv dpqgrqdtve
      421 vmledkgdni frctyrpvlq gphticvtya gtqipkspft vnvaeacaps vcrasgrglq
      481 pkgvrvheva dfkvftkgag tgelrvsvrg pagteepvsv rdmgdgvyec eyspgvpgky
      541 vvaitwggha iprspfevqv apapgsqkvr awgpgleggv vgrsadfvve aigtevgtlg
      601 fsiegpsqar iecddrgdgs cdvrywptep gayavhvvcd dedikdspfi anilpapndc
      661 wpekvkafgp gleptgcive hpaeftidtr gagkgplkly aqdaegfpid ikvkdngdgt
      721 yscvyvptka ikhtiiitwg gvntprspfr vnvgegshpg rvkvygpgve ktglkanept
      781 yftvdcseag qgdvsigikc apgvvgplea didfdiiknd ndtftvkytp pgaglytimv
      841 lfanqeipss pfrisvepdh daskvkaegp glsrtgvevg qpthftvqtr gagkaplrvq
      901 fggagpgpav rdfevidnhd ysytvkytpl qqgplsvavt yggdpipksp fpvtvapplq
      961 lgkvlvqgls nkaevgqvqe fgvqtqgagg qgrvgvqitg psrrpvpcrv gtappgaphp
     1021 vswtppeegp yrldvtydgh pvpgspftve aalppdptkv rafgpglqgg rvgvpapfti
     1081 atkgagaggl gltvegpcea kiecqdngdg scavsylpte pgdyainilf adrhipgspf
     1141 kakvtpvfdp tkvtasgpgl ergkagevat fmvdcsqage aeltieisse agvkaevliq
     1201 nnrdgtyait ytpacpgayt itikygghpv pkfpvrvtvd pavdtsgvkv ygqgveprgv
     1261 lrevgtefmv dtralsrtgg phvgvrvlnp sggttdtrit drgdgtyrvq ytpfeegmhq
     1321 vevtyddvpv pnspfrvava egcdpsrvra hgpglegglv gkanrftvet rgagtgglgl
     1381 aiegpseakm sckdnkdgsc tveyipftpg dydvnitfgg hpipgspfrv pvkdmvdpsk
     1441 vkcsgpglgp tvrarvpqtf tvdasaagla plevtllgps glaepvevrd ngdgthkvny
     1501 tpatdgpytl avkyadqevp rspfklkvvp ghdaskvras gpglsasgip aslpveftid
     1561 areagegllt vqildpegrp tetvlrdhgd gtfavayvpa vpgrytstik yggdeipcsp
     1621 frclavpsgd askclvtvsi gghglgaclg ptiqigeetv itvdakaagq gkvtckvstp
     1681 dgaeldvdvv enhdgtfdiy ytapepgkyv itirfggehv pnspfhvlat deppataenl
     1741 rpfnlvipft vqkgeitgev rmpsgktarp nitdnkdgtv tvryaptekg lhemdirydg
     1801 nhipgsplqf yvdainprhv saygpglshg mvnkpctfti vtkdageggl slavegpska
     1861 eitcqdnkdg tctvsylpta pgdyniivrf ddkhipgspf takitgddsm rtsqlnvgts
     1921 tdvslkitet dlslltasir apsgneepcl lkrlpnrhig isftpkevge hvvsvkksgq
     1981 hvtnspfkil vgqseigdas rvkvwgkglv eghtfevsef ivdtrsagyg glglsiegps
     2041 kvdincedve dgtckvtycp tepgnyiini kfadkhvpgs pftvkvtgeg rmkesitrrr
     2101 qapsiatigs tcdlnlkipg nwfqmvsaqe rltrtftrss htytrterte isktrggett
     2161 revrveestr vggdpfpsvf ggflareglg sfgsiaraqe geasaqelsa qvlspsgqrf
     2221 eaevvaggag aysvrfvpqe mgphtvsvky rgqhvpgspf qftvgplgeg gahkvraggt
     2281 glqravagip aefsiwtrea gagglsiave gpskaeigfe dhkdgscgvs ylvqepgdye
     2341 vsikfndehi pdspfivpva shsddarrlt vtslqetvmv nqpasfavql ngargvidak
     2401 vhtpagtvee cyvseldsdk ysigflpren gvhsidlrfn grhvpgspfn irvgeqsqag
     2461 dpglvtaygp gleggltgvc seflvktana gagalavtid gpskvkldcv ecaeghrvty
     2521 tpmapgnyli sikyggphhi vgspfkakvt gprlsgghsl hetstvlvet vtrgtsassa
     2581 sgasrgtpaf gglpkfssda gkvvargpgl staflgqknh ftvdcskagt nmlmvgvhgp
     2641 ktpceevyvk hvgnriynvt ytvkekgdyv lilrwgddnv pgspfrvtvp
//
LOCUS       XP_053939478            2682 aa            linear   VRT 09-MAR-2023
DEFINITION  filamin-C isoform X2 [Cuculus canorus].
ACCESSION   XP_053939478
VERSION     XP_053939478.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083503.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2682
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2682
                     /product="filamin-C isoform X2"
                     /calculated_mol_wt=285259
     Region          17..141
                     /region_name="CH_FLNC_rpt1"
                     /note="first calponin homology (CH) domain found in
                     filamin-C (FLN-C) and similar proteins; cd21310"
                     /db_xref="CDD:409159"
     Site            order(18..23,29..30,33,37,79..82,87..90,92..93,96..97,99,
                     108..116,121,123..124,126..127,130..131,134)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409159"
     Region          151..259
                     /region_name="CH_SF"
                     /note="calponin homology (CH) domain superfamily; cl00030"
                     /db_xref="CDD:469584"
     Site            order(160,208,210..211,214..215,217,230..234,241,243..244,
                     246..247,250..251,254)
                     /site_type="other"
                     /note="actin binding site [polypeptide binding]"
                     /db_xref="CDD:409031"
     Region          270..366
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          370..466
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          469..563
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          567..656
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          662..756
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          759..858
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          862..958
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          963..1054
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1057..1146
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1150..1242
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1246..1342
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1345..1434
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1438..1531
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1534..1628
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1631..1723
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          <1741..1805
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1809..1898
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1991..2080
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          <2194..2258
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          2264..2352
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          2368..2447
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          2454..2544
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          2592..2681
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     CDS             1..2682
                     /gene="FLNC"
                     /coded_by="XM_054083503.1:727..8775"
                     /db_xref="GeneID:104061382"
ORIGIN      
        1 mnsnyevqtt eepeelpate kdlaedapwk kiqqntftrw cnehlkcvhk rigdlqrdls
       61 dglrlialle vlsqkkmgrk yhprpnfrqm klenvsvale flerehiklv sidskaivdg
      121 nlklilgliw tlilhysism piweeeeede arrqtpkqrl lgwiqnkvpq lpitnfhrdw
      181 rdgkalgalv dncapglcpd wenwdpaqpv qnareamqqa ddwlgvpqvi apeeivdpnv
      241 dehsvmtyls qfpkaklkpg aplrarqpqp traraygpgi ephgnvvlrp aqftvetlea
      301 gvgevlvyve dpeghteeak vvpnndkkrt ysvtyvpkvg glhkvtvlfa gqnidkspfg
      361 vnvamalgda skvtargpgl epvgnvankp tyfdiytaga gpgdvgvviv dpqgrqdtve
      421 vmledkgdni frctyrpvlq gphticvtya gtqipkspft vnvaeacaps vcrasgrglq
      481 pkgvrvheva dfkvftkgag tgelrvsvrg pagteepvsv rdmgdgvyec eyspgvpgky
      541 vvaitwggha iprspfevqv apapgsqkvr awgpgleggv vgrsadfvve aigtevgtlg
      601 fsiegpsqar iecddrgdgs cdvrywptep gayavhvvcd dedikdspfi anilpapndc
      661 wpekvkafgp gleptgcive hpaeftidtr gagkgplkly aqdaegfpid ikvkdngdgt
      721 yscvyvptka ikhtiiitwg gvntprspfr vnvgegshpg rvkvygpgve ktglkanept
      781 yftvdcseag qgdvsigikc apgvvgplea didfdiiknd ndtftvkytp pgaglytimv
      841 lfanqeipss pfrisvepdh daskvkaegp glsrtgvevg qpthftvqtr gagkaplrvq
      901 fggagpgpav rdfevidnhd ysytvkytpl qqgplsvavt yggdpipksp fpvtvapplq
      961 lgkvlvqgls nkaevgqvqe fgvqtqgagg qgrvgvqitg psrrpvpcrv gtappgaphp
     1021 vswtppeegp yrldvtydgh pvpgspftve aalppdptkv rafgpglqgg rvgvpapfti
     1081 atkgagaggl gltvegpcea kiecqdngdg scavsylpte pgdyainilf adrhipgspf
     1141 kakvtpvfdp tkvtasgpgl ergkagevat fmvdcsqage aeltieisse agvkaevliq
     1201 nnrdgtyait ytpacpgayt itikygghpv pkfpvrvtvd pavdtsgvkv ygqgveprgv
     1261 lrevgtefmv dtralsrtgg phvgvrvlnp sggttdtrit drgdgtyrvq ytpfeegmhq
     1321 vevtyddvpv pnspfrvava egcdpsrvra hgpglegglv gkanrftvet rgagtgglgl
     1381 aiegpseakm sckdnkdgsc tveyipftpg dydvnitfgg hpipgspfrv pvkdmvdpsk
     1441 vkcsgpglgp tvrarvpqtf tvdasaagla plevtllgps glaepvevrd ngdgthkvny
     1501 tpatdgpytl avkyadqevp rspfklkvvp ghdaskvras gpglsasgip aslpveftid
     1561 areagegllt vqildpegrp tetvlrdhgd gtfavayvpa vpgrytstik yggdeipcsp
     1621 frclavpsgd askclvtgac lgptiqigee tvitvdakaa gqgkvtckvs tpdgaeldvd
     1681 vvenhdgtfd iyytapepgk yvitirfgge hvpnspfhvl atdeppatae nlrpfnlvip
     1741 ftvqkgeitg evrmpsgkta rpnitdnkdg tvtvryapte kglhemdiry dgnhipgspl
     1801 qfyvdainpr hvsaygpgls hgmvnkpctf tivtkdageg glslavegps kaeitcqdnk
     1861 dgtctvsylp tapgdyniiv rfddkhipgs pftakitgdd smrtsqlnvg tstdvslkit
     1921 etdlslltas irapsgneep cllkrlpnrh igisftpkev gehvvsvkks gqhvtnspfk
     1981 ilvgqseigd asrvkvwgkg lveghtfevs efivdtrsag ygglglsieg pskvdinced
     2041 vedgtckvty cptepgnyii nikfadkhvp gspftvkvtg egrmkesitr rrqapsiati
     2101 gstcdlnlki pgnwfqmvsa qerltrtftr sshtytrter teisktrgge ttrevrvees
     2161 trvggdpfps vfggflareg lgsfgsiara qegeasaqel saqvlspsgq rfeaevvagg
     2221 agaysvrfvp qemgphtvsv kyrgqhvpgs pfqftvgplg eggahkvrag gtglqravag
     2281 ipaefsiwtr eagagglsia vegpskaeig fedhkdgscg vsylvqepgd yevsikfnde
     2341 hipdspfivp vashsddarr ltvtslqetv mvnqpasfav qlngargvid akvhtpagtv
     2401 eecyvselds dkysigflpr engvhsidlr fngrhvpgsp fnirvgeqsq agdpglvtay
     2461 gpgleggltg vcseflvkta nagagalavt idgpskvkld cvecaeghrv tytpmapgny
     2521 lisikyggph hivgspfkak vtgprlsggh slhetstvlv etvtrgtsas sasgasrgtp
     2581 afgglpkfss dagkvvargp glstaflgqk nhftvdcska gtnmlmvgvh gpktpceevy
     2641 vkhvgnriyn vtytvkekgd yvlilrwgdd nvpgspfrvt vp
//
LOCUS       XP_053939487            2609 aa            linear   VRT 09-MAR-2023
DEFINITION  filamin-C isoform X3 [Cuculus canorus].
ACCESSION   XP_053939487
VERSION     XP_053939487.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083512.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2609
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2609
                     /product="filamin-C isoform X3"
                     /calculated_mol_wt=276938
     Region          17..141
                     /region_name="CH_FLNC_rpt1"
                     /note="first calponin homology (CH) domain found in
                     filamin-C (FLN-C) and similar proteins; cd21310"
                     /db_xref="CDD:409159"
     Site            order(18..23,29..30,33,37,79..82,87..90,92..93,96..97,99,
                     108..116,121,123..124,126..127,130..131,134)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409159"
     Region          151..259
                     /region_name="CH_SF"
                     /note="calponin homology (CH) domain superfamily; cl00030"
                     /db_xref="CDD:469584"
     Site            order(160,208,210..211,214..215,217,230..234,241,243..244,
                     246..247,250..251,254)
                     /site_type="other"
                     /note="actin binding site [polypeptide binding]"
                     /db_xref="CDD:409031"
     Region          270..366
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          370..466
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          469..563
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          567..656
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          662..756
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          759..858
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          862..958
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          963..1054
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1057..1146
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1150..1242
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1246..1342
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1345..1434
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1438..1531
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1534..1628
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1631..1731
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          <1749..1813
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1817..1906
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1999..2088
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          <2126..2179
                     /region_name="Filamin"
                     /note="Filamin/ABP280 repeat; pfam00630"
                     /db_xref="CDD:395505"
     Region          2191..2279
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          2295..2374
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          2381..2471
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          2519..2608
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     CDS             1..2609
                     /gene="FLNC"
                     /coded_by="XM_054083512.1:727..8556"
                     /db_xref="GeneID:104061382"
ORIGIN      
        1 mnsnyevqtt eepeelpate kdlaedapwk kiqqntftrw cnehlkcvhk rigdlqrdls
       61 dglrlialle vlsqkkmgrk yhprpnfrqm klenvsvale flerehiklv sidskaivdg
      121 nlklilgliw tlilhysism piweeeeede arrqtpkqrl lgwiqnkvpq lpitnfhrdw
      181 rdgkalgalv dncapglcpd wenwdpaqpv qnareamqqa ddwlgvpqvi apeeivdpnv
      241 dehsvmtyls qfpkaklkpg aplrarqpqp traraygpgi ephgnvvlrp aqftvetlea
      301 gvgevlvyve dpeghteeak vvpnndkkrt ysvtyvpkvg glhkvtvlfa gqnidkspfg
      361 vnvamalgda skvtargpgl epvgnvankp tyfdiytaga gpgdvgvviv dpqgrqdtve
      421 vmledkgdni frctyrpvlq gphticvtya gtqipkspft vnvaeacaps vcrasgrglq
      481 pkgvrvheva dfkvftkgag tgelrvsvrg pagteepvsv rdmgdgvyec eyspgvpgky
      541 vvaitwggha iprspfevqv apapgsqkvr awgpgleggv vgrsadfvve aigtevgtlg
      601 fsiegpsqar iecddrgdgs cdvrywptep gayavhvvcd dedikdspfi anilpapndc
      661 wpekvkafgp gleptgcive hpaeftidtr gagkgplkly aqdaegfpid ikvkdngdgt
      721 yscvyvptka ikhtiiitwg gvntprspfr vnvgegshpg rvkvygpgve ktglkanept
      781 yftvdcseag qgdvsigikc apgvvgplea didfdiiknd ndtftvkytp pgaglytimv
      841 lfanqeipss pfrisvepdh daskvkaegp glsrtgvevg qpthftvqtr gagkaplrvq
      901 fggagpgpav rdfevidnhd ysytvkytpl qqgplsvavt yggdpipksp fpvtvapplq
      961 lgkvlvqgls nkaevgqvqe fgvqtqgagg qgrvgvqitg psrrpvpcrv gtappgaphp
     1021 vswtppeegp yrldvtydgh pvpgspftve aalppdptkv rafgpglqgg rvgvpapfti
     1081 atkgagaggl gltvegpcea kiecqdngdg scavsylpte pgdyainilf adrhipgspf
     1141 kakvtpvfdp tkvtasgpgl ergkagevat fmvdcsqage aeltieisse agvkaevliq
     1201 nnrdgtyait ytpacpgayt itikygghpv pkfpvrvtvd pavdtsgvkv ygqgveprgv
     1261 lrevgtefmv dtralsrtgg phvgvrvlnp sggttdtrit drgdgtyrvq ytpfeegmhq
     1321 vevtyddvpv pnspfrvava egcdpsrvra hgpglegglv gkanrftvet rgagtgglgl
     1381 aiegpseakm sckdnkdgsc tveyipftpg dydvnitfgg hpipgspfrv pvkdmvdpsk
     1441 vkcsgpglgp tvrarvpqtf tvdasaagla plevtllgps glaepvevrd ngdgthkvny
     1501 tpatdgpytl avkyadqevp rspfklkvvp ghdaskvras gpglsasgip aslpveftid
     1561 areagegllt vqildpegrp tetvlrdhgd gtfavayvpa vpgrytstik yggdeipcsp
     1621 frclavpsgd askclvtvsi gghglgaclg ptiqigeetv itvdakaagq gkvtckvstp
     1681 dgaeldvdvv enhdgtfdiy ytapepgkyv itirfggehv pnspfhvlat deppataenl
     1741 rpfnlvipft vqkgeitgev rmpsgktarp nitdnkdgtv tvryaptekg lhemdirydg
     1801 nhipgsplqf yvdainprhv saygpglshg mvnkpctfti vtkdageggl slavegpska
     1861 eitcqdnkdg tctvsylpta pgdyniivrf ddkhipgspf takitgddsm rtsqlnvgts
     1921 tdvslkitet dlslltasir apsgneepcl lkrlpnrhig isftpkevge hvvsvkksgq
     1981 hvtnspfkil vgqseigdas rvkvwgkglv eghtfevsef ivdtrsagyg glglsiegps
     2041 kvdincedve dgtckvtycp tepgnyiini kfadkhvpgs pftvkvtgeg rmkesitrrr
     2101 qapsiatigs tcdlnlkipg easaqelsaq vlspsgqrfe aevvaggaga ysvrfvpqem
     2161 gphtvsvkyr gqhvpgspfq ftvgplgegg ahkvraggtg lqravagipa efsiwtreag
     2221 agglsiaveg pskaeigfed hkdgscgvsy lvqepgdyev sikfndehip dspfivpvas
     2281 hsddarrltv tslqetvmvn qpasfavqln gargvidakv htpagtveec yvseldsdky
     2341 sigflpreng vhsidlrfng rhvpgspfni rvgeqsqagd pglvtaygpg leggltgvcs
     2401 eflvktanag agalavtidg pskvkldcve caeghrvtyt pmapgnylis ikyggphhiv
     2461 gspfkakvtg prlsgghslh etstvlvetv trgtsassas gasrgtpafg glpkfssdag
     2521 kvvargpgls taflgqknhf tvdcskagtn mlmvgvhgpk tpceevyvkh vgnriynvty
     2581 tvkekgdyvl ilrwgddnvp gspfrvtvp
//
LOCUS       XP_053939496            2601 aa            linear   VRT 09-MAR-2023
DEFINITION  filamin-C isoform X4 [Cuculus canorus].
ACCESSION   XP_053939496
VERSION     XP_053939496.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083521.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2601
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2601
                     /product="filamin-C isoform X4"
                     /calculated_mol_wt=276217
     Region          17..141
                     /region_name="CH_FLNC_rpt1"
                     /note="first calponin homology (CH) domain found in
                     filamin-C (FLN-C) and similar proteins; cd21310"
                     /db_xref="CDD:409159"
     Site            order(18..23,29..30,33,37,79..82,87..90,92..93,96..97,99,
                     108..116,121,123..124,126..127,130..131,134)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409159"
     Region          151..259
                     /region_name="CH_SF"
                     /note="calponin homology (CH) domain superfamily; cl00030"
                     /db_xref="CDD:469584"
     Site            order(160,208,210..211,214..215,217,230..234,241,243..244,
                     246..247,250..251,254)
                     /site_type="other"
                     /note="actin binding site [polypeptide binding]"
                     /db_xref="CDD:409031"
     Region          270..366
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          370..466
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          469..563
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          567..656
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          662..756
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          759..858
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          862..958
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          963..1054
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1057..1146
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1150..1242
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1246..1342
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1345..1434
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1438..1531
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1534..1628
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1631..1723
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          <1741..1805
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1809..1898
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          1991..2080
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          <2118..2171
                     /region_name="Filamin"
                     /note="Filamin/ABP280 repeat; pfam00630"
                     /db_xref="CDD:395505"
     Region          2183..2271
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          2287..2366
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          2373..2463
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          2511..2600
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     CDS             1..2601
                     /gene="FLNC"
                     /coded_by="XM_054083521.1:727..8532"
                     /db_xref="GeneID:104061382"
ORIGIN      
        1 mnsnyevqtt eepeelpate kdlaedapwk kiqqntftrw cnehlkcvhk rigdlqrdls
       61 dglrlialle vlsqkkmgrk yhprpnfrqm klenvsvale flerehiklv sidskaivdg
      121 nlklilgliw tlilhysism piweeeeede arrqtpkqrl lgwiqnkvpq lpitnfhrdw
      181 rdgkalgalv dncapglcpd wenwdpaqpv qnareamqqa ddwlgvpqvi apeeivdpnv
      241 dehsvmtyls qfpkaklkpg aplrarqpqp traraygpgi ephgnvvlrp aqftvetlea
      301 gvgevlvyve dpeghteeak vvpnndkkrt ysvtyvpkvg glhkvtvlfa gqnidkspfg
      361 vnvamalgda skvtargpgl epvgnvankp tyfdiytaga gpgdvgvviv dpqgrqdtve
      421 vmledkgdni frctyrpvlq gphticvtya gtqipkspft vnvaeacaps vcrasgrglq
      481 pkgvrvheva dfkvftkgag tgelrvsvrg pagteepvsv rdmgdgvyec eyspgvpgky
      541 vvaitwggha iprspfevqv apapgsqkvr awgpgleggv vgrsadfvve aigtevgtlg
      601 fsiegpsqar iecddrgdgs cdvrywptep gayavhvvcd dedikdspfi anilpapndc
      661 wpekvkafgp gleptgcive hpaeftidtr gagkgplkly aqdaegfpid ikvkdngdgt
      721 yscvyvptka ikhtiiitwg gvntprspfr vnvgegshpg rvkvygpgve ktglkanept
      781 yftvdcseag qgdvsigikc apgvvgplea didfdiiknd ndtftvkytp pgaglytimv
      841 lfanqeipss pfrisvepdh daskvkaegp glsrtgvevg qpthftvqtr gagkaplrvq
      901 fggagpgpav rdfevidnhd ysytvkytpl qqgplsvavt yggdpipksp fpvtvapplq
      961 lgkvlvqgls nkaevgqvqe fgvqtqgagg qgrvgvqitg psrrpvpcrv gtappgaphp
     1021 vswtppeegp yrldvtydgh pvpgspftve aalppdptkv rafgpglqgg rvgvpapfti
     1081 atkgagaggl gltvegpcea kiecqdngdg scavsylpte pgdyainilf adrhipgspf
     1141 kakvtpvfdp tkvtasgpgl ergkagevat fmvdcsqage aeltieisse agvkaevliq
     1201 nnrdgtyait ytpacpgayt itikygghpv pkfpvrvtvd pavdtsgvkv ygqgveprgv
     1261 lrevgtefmv dtralsrtgg phvgvrvlnp sggttdtrit drgdgtyrvq ytpfeegmhq
     1321 vevtyddvpv pnspfrvava egcdpsrvra hgpglegglv gkanrftvet rgagtgglgl
     1381 aiegpseakm sckdnkdgsc tveyipftpg dydvnitfgg hpipgspfrv pvkdmvdpsk
     1441 vkcsgpglgp tvrarvpqtf tvdasaagla plevtllgps glaepvevrd ngdgthkvny
     1501 tpatdgpytl avkyadqevp rspfklkvvp ghdaskvras gpglsasgip aslpveftid
     1561 areagegllt vqildpegrp tetvlrdhgd gtfavayvpa vpgrytstik yggdeipcsp
     1621 frclavpsgd askclvtgac lgptiqigee tvitvdakaa gqgkvtckvs tpdgaeldvd
     1681 vvenhdgtfd iyytapepgk yvitirfgge hvpnspfhvl atdeppatae nlrpfnlvip
     1741 ftvqkgeitg evrmpsgkta rpnitdnkdg tvtvryapte kglhemdiry dgnhipgspl
     1801 qfyvdainpr hvsaygpgls hgmvnkpctf tivtkdageg glslavegps kaeitcqdnk
     1861 dgtctvsylp tapgdyniiv rfddkhipgs pftakitgdd smrtsqlnvg tstdvslkit
     1921 etdlslltas irapsgneep cllkrlpnrh igisftpkev gehvvsvkks gqhvtnspfk
     1981 ilvgqseigd asrvkvwgkg lveghtfevs efivdtrsag ygglglsieg pskvdinced
     2041 vedgtckvty cptepgnyii nikfadkhvp gspftvkvtg egrmkesitr rrqapsiati
     2101 gstcdlnlki pgeasaqels aqvlspsgqr feaevvagga gaysvrfvpq emgphtvsvk
     2161 yrgqhvpgsp fqftvgplge ggahkvragg tglqravagi paefsiwtre agagglsiav
     2221 egpskaeigf edhkdgscgv sylvqepgdy evsikfndeh ipdspfivpv ashsddarrl
     2281 tvtslqetvm vnqpasfavq lngargvida kvhtpagtve ecyvseldsd kysigflpre
     2341 ngvhsidlrf ngrhvpgspf nirvgeqsqa gdpglvtayg pgleggltgv cseflvktan
     2401 agagalavti dgpskvkldc vecaeghrvt ytpmapgnyl isikyggphh ivgspfkakv
     2461 tgprlsgghs lhetstvlve tvtrgtsass asgasrgtpa fgglpkfssd agkvvargpg
     2521 lstaflgqkn hftvdcskag tnmlmvgvhg pktpceevyv khvgnriynv tytvkekgdy
     2581 vlilrwgddn vpgspfrvtv p
//
LOCUS       XP_053939506              31 aa            linear   VRT 09-MAR-2023
DEFINITION  sarcolipin [Cuculus canorus].
ACCESSION   XP_053939506
VERSION     XP_053939506.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083531.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..31
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..31
                     /product="sarcolipin"
                     /calculated_mol_wt=3658
     Region          2..31
                     /region_name="Sarcolipin"
                     /note="Sarcolipin bioactive peptide and similar proteins;
                     cd20253"
                     /db_xref="CDD:380751"
     CDS             1..31
                     /gene="SLN"
                     /coded_by="XM_054083531.1:266..361"
                     /db_xref="GeneID:104055339"
ORIGIN      
        1 merstqelfl nfmivlitvl lmwllvksyq e
//
LOCUS       XP_009567033             648 aa            linear   VRT 09-MAR-2023
DEFINITION  conserved oligomeric Golgi complex subunit 6 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009567033
VERSION     XP_009567033.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568738.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567033.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..648
                     /product="conserved oligomeric Golgi complex subunit 6
                     isoform X1"
                     /calculated_mol_wt=72588
     Region          47..643
                     /region_name="COG6"
                     /note="Conserved oligomeric complex COG6; pfam06419"
                     /db_xref="CDD:461904"
     CDS             1..648
                     /gene="COG6"
                     /coded_by="XM_009568738.2:45..1991"
                     /db_xref="GeneID:104066167"
ORIGIN      
        1 madtaapppa aapvpglpaa pgsnplsrkl nkiletrldn dkemlealka lstffvensl
       61 rtrrnlrgdi errslainee fvhifkqvke elesinedvq amssccedms srlkaakeqt
      121 qdlivkttkl qaenqrlemk aqvadafiak fqltpdemnl lrgtkdepit edffkalgrv
      181 kqihddvkil lrtnqqragl eimeqmallq etsyerlyrw tqnecrsltq escdispvla
      241 qamealqdrp vlykytldef gtarrsavvr gfidaltrgg lggtprpiem hshdplryvg
      301 dmlawlhqat asekehleam lklvtiqgve eniqevvghi tedvcrplkv rieqvivaep
      361 gavllykisn llkfyhhtis aivgnsaatl lttieemhll skkiffssls lhasklmdkv
      421 elpppdlgps salnqtlnll revlashnss vvpldarqad fvqvlscvld pllqmctmsa
      481 sslgtadmat fmvnslymmk ttlslfeftd krlemlqfqi eahldtline qasyvltrag
      541 lsyiynsvqq hkpeqgplsh vpsmdsvslk vamaqfdryl sapdslimsq lnfllsatvk
      601 eqiikqsmel vcrayselya avmdpsneyk dpetilhrsp hqvqtlls
//
LOCUS       XP_053939523             619 aa            linear   VRT 09-MAR-2023
DEFINITION  conserved oligomeric Golgi complex subunit 6 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053939523
VERSION     XP_053939523.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083548.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..619
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..619
                     /product="conserved oligomeric Golgi complex subunit 6
                     isoform X2"
                     /calculated_mol_wt=69835
     Region          18..614
                     /region_name="COG6"
                     /note="Conserved oligomeric complex COG6; pfam06419"
                     /db_xref="CDD:461904"
     CDS             1..619
                     /gene="COG6"
                     /coded_by="XM_054083548.1:81..1940"
                     /db_xref="GeneID:104066167"
ORIGIN      
        1 mprtcsfpsg rreemlealk alstffvens lrtrrnlrgd ierrslaine efvhifkqvk
       61 eelesinedv qamssccedm ssrlkaakeq tqdlivkttk lqaenqrlem kaqvadafia
      121 kfqltpdemn llrgtkdepi tedffkalgr vkqihddvki llrtnqqrag leimeqmall
      181 qetsyerlyr wtqnecrslt qescdispvl aqamealqdr pvlykytlde fgtarrsavv
      241 rgfidaltrg glggtprpie mhshdplryv gdmlawlhqa tasekehlea mlklvtiqgv
      301 eeniqevvgh itedvcrplk vrieqvivae pgavllykis nllkfyhhti saivgnsaat
      361 llttieemhl lskkiffssl slhasklmdk velpppdlgp ssalnqtlnl lrevlashns
      421 svvpldarqa dfvqvlscvl dpllqmctms asslgtadma tfmvnslymm kttlslfeft
      481 dkrlemlqfq ieahldtlin eqasyvltra glsyiynsvq qhkpeqgpls hvpsmdsvsl
      541 kvamaqfdry lsapdslims qlnfllsatv keqiikqsme lvcraysely aavmdpsney
      601 kdpetilhrs phqvqtlls
//
LOCUS       XP_053939528             714 aa            linear   VRT 09-MAR-2023
DEFINITION  protein kinase C theta type isoform X1 [Cuculus canorus].
ACCESSION   XP_053939528
VERSION     XP_053939528.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083553.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..714
                     /product="protein kinase C theta type isoform X1"
                     /calculated_mol_wt=81716
     Region          153..213
                     /region_name="C1_nPKC_theta-like_rpt1"
                     /note="first protein kinase C conserved region 1 (C1
                     domain) found in novel protein kinase C (nPKC) theta,
                     delta, and similar proteins; cd20834"
                     /db_xref="CDD:410384"
     Site            order(165..171,179..183,186)
                     /site_type="other"
                     /note="putative DAG/PE binding site [chemical binding]"
                     /db_xref="CDD:410384"
     Region          232..281
                     /region_name="C1_nPKC_theta-like_rpt2"
                     /note="second protein kinase C conserved region 1 (C1
                     domain) found in novel protein kinase C (nPKC) theta,
                     delta, and similar proteins; cd20837"
                     /db_xref="CDD:410387"
     Site            order(237..243,251..255,258)
                     /site_type="other"
                     /note="DAG/PE binding site [chemical binding]"
                     /db_xref="CDD:410387"
     Region          382..712
                     /region_name="STKc_nPKC_theta"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Novel Protein Kinase C theta; cd05619"
                     /db_xref="CDD:270770"
     Site            order(394..398,402,415,417,450,466..467,469,473,475,512,
                     514,516..517,519,529..530,533,547..552,579,585,588)
                     /site_type="active"
                     /db_xref="CDD:270770"
     Site            order(394..398,402,415,417,450,467..469,473,512,514,
                     516..517,519,529..530)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270770"
     Site            order(398,473,475,512,514,516,533,547..552,579,585,588)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270770"
     Site            529..552
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270770"
     Site            684
                     /site_type="other"
                     /note="turn motif phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:270770"
     Site            699..704
                     /site_type="other"
                     /note="hydrophobic motif (HM)"
                     /db_xref="CDD:270770"
     CDS             1..714
                     /gene="PRKCQ"
                     /coded_by="XM_054083553.1:517..2661"
                     /db_xref="GeneID:104066507"
ORIGIN      
        1 mspflrigls nydsgpylps qgevinpyca vmvkeavese sgqvyvqkkp tmyppwnstf
       61 dahinngrvm hivvkdksae mvsettvelk vlaerckksn gkteiwlelk pqgrmlmnar
      121 yfleisdakd ladcetegff slhqrrgaik qakihnvkch eftatffpqp tfcsvchefv
      181 wglnkqgyqc rqcnaaihkk cidkviakct gsainsretm fhkerfkidm phrfkvynyk
      241 sptfcehcgt llwglarqgl kcdacgmnvh hkcqtkvanl cgvnqklmae alamiestqq
      301 arsqrdteqi srdgpleigf pvpvkevtpl qalpasttgk kepqgiswet pvedtmkges
      361 liesdlggeq pqeqqehqmq lkltiedfvl hkmlgkgsfg kvflaelkst dqyfavkalk
      421 kdvvlmdddv ectmvekrvl slawehpflt hvfctfqtke nlffvmeyln ggdlmfhiqs
      481 chkfdlprat fyaaeiicgl qflhskgiiy rdlkldnvll dneghikiad fgmckenmfg
      541 daktstfcgt pdyiapeill gqkyntsvdw wsfgvllyem ligqspfhgq deeelfqsir
      601 mdnpfyprwl dkdakdilvk lfvreperrl gargnirqha ffreinweal eerrmeppfk
      661 prvkspsdcs nfdkeflnek prlscadral insmdqnmfs nfsfvnpkme kifs
//
LOCUS       XP_053939536             714 aa            linear   VRT 09-MAR-2023
DEFINITION  protein kinase C theta type isoform X1 [Cuculus canorus].
ACCESSION   XP_053939536
VERSION     XP_053939536.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083561.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..714
                     /product="protein kinase C theta type isoform X1"
                     /calculated_mol_wt=81716
     Region          153..213
                     /region_name="C1_nPKC_theta-like_rpt1"
                     /note="first protein kinase C conserved region 1 (C1
                     domain) found in novel protein kinase C (nPKC) theta,
                     delta, and similar proteins; cd20834"
                     /db_xref="CDD:410384"
     Site            order(165..171,179..183,186)
                     /site_type="other"
                     /note="putative DAG/PE binding site [chemical binding]"
                     /db_xref="CDD:410384"
     Region          232..281
                     /region_name="C1_nPKC_theta-like_rpt2"
                     /note="second protein kinase C conserved region 1 (C1
                     domain) found in novel protein kinase C (nPKC) theta,
                     delta, and similar proteins; cd20837"
                     /db_xref="CDD:410387"
     Site            order(237..243,251..255,258)
                     /site_type="other"
                     /note="DAG/PE binding site [chemical binding]"
                     /db_xref="CDD:410387"
     Region          382..712
                     /region_name="STKc_nPKC_theta"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Novel Protein Kinase C theta; cd05619"
                     /db_xref="CDD:270770"
     Site            order(394..398,402,415,417,450,466..467,469,473,475,512,
                     514,516..517,519,529..530,533,547..552,579,585,588)
                     /site_type="active"
                     /db_xref="CDD:270770"
     Site            order(394..398,402,415,417,450,467..469,473,512,514,
                     516..517,519,529..530)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270770"
     Site            order(398,473,475,512,514,516,533,547..552,579,585,588)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270770"
     Site            529..552
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270770"
     Site            684
                     /site_type="other"
                     /note="turn motif phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:270770"
     Site            699..704
                     /site_type="other"
                     /note="hydrophobic motif (HM)"
                     /db_xref="CDD:270770"
     CDS             1..714
                     /gene="PRKCQ"
                     /coded_by="XM_054083561.1:424..2568"
                     /db_xref="GeneID:104066507"
ORIGIN      
        1 mspflrigls nydsgpylps qgevinpyca vmvkeavese sgqvyvqkkp tmyppwnstf
       61 dahinngrvm hivvkdksae mvsettvelk vlaerckksn gkteiwlelk pqgrmlmnar
      121 yfleisdakd ladcetegff slhqrrgaik qakihnvkch eftatffpqp tfcsvchefv
      181 wglnkqgyqc rqcnaaihkk cidkviakct gsainsretm fhkerfkidm phrfkvynyk
      241 sptfcehcgt llwglarqgl kcdacgmnvh hkcqtkvanl cgvnqklmae alamiestqq
      301 arsqrdteqi srdgpleigf pvpvkevtpl qalpasttgk kepqgiswet pvedtmkges
      361 liesdlggeq pqeqqehqmq lkltiedfvl hkmlgkgsfg kvflaelkst dqyfavkalk
      421 kdvvlmdddv ectmvekrvl slawehpflt hvfctfqtke nlffvmeyln ggdlmfhiqs
      481 chkfdlprat fyaaeiicgl qflhskgiiy rdlkldnvll dneghikiad fgmckenmfg
      541 daktstfcgt pdyiapeill gqkyntsvdw wsfgvllyem ligqspfhgq deeelfqsir
      601 mdnpfyprwl dkdakdilvk lfvreperrl gargnirqha ffreinweal eerrmeppfk
      661 prvkspsdcs nfdkeflnek prlscadral insmdqnmfs nfsfvnpkme kifs
//
LOCUS       XP_053939542             663 aa            linear   VRT 09-MAR-2023
DEFINITION  protein kinase C theta type isoform X2 [Cuculus canorus].
ACCESSION   XP_053939542
VERSION     XP_053939542.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083567.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..663
                     /product="protein kinase C theta type isoform X2"
                     /calculated_mol_wt=76126
     Region          102..162
                     /region_name="C1_nPKC_theta-like_rpt1"
                     /note="first protein kinase C conserved region 1 (C1
                     domain) found in novel protein kinase C (nPKC) theta,
                     delta, and similar proteins; cd20834"
                     /db_xref="CDD:410384"
     Site            order(114..120,128..132,135)
                     /site_type="other"
                     /note="putative DAG/PE binding site [chemical binding]"
                     /db_xref="CDD:410384"
     Region          181..230
                     /region_name="C1_nPKC_theta-like_rpt2"
                     /note="second protein kinase C conserved region 1 (C1
                     domain) found in novel protein kinase C (nPKC) theta,
                     delta, and similar proteins; cd20837"
                     /db_xref="CDD:410387"
     Site            order(186..192,200..204,207)
                     /site_type="other"
                     /note="DAG/PE binding site [chemical binding]"
                     /db_xref="CDD:410387"
     Region          331..661
                     /region_name="STKc_nPKC_theta"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Novel Protein Kinase C theta; cd05619"
                     /db_xref="CDD:270770"
     Site            order(343..347,351,364,366,399,415..416,418,422,424,461,
                     463,465..466,468,478..479,482,496..501,528,534,537)
                     /site_type="active"
                     /db_xref="CDD:270770"
     Site            order(343..347,351,364,366,399,416..418,422,461,463,
                     465..466,468,478..479)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270770"
     Site            order(347,422,424,461,463,465,482,496..501,528,534,537)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270770"
     Site            478..501
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270770"
     Site            633
                     /site_type="other"
                     /note="turn motif phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:270770"
     Site            648..653
                     /site_type="other"
                     /note="hydrophobic motif (HM)"
                     /db_xref="CDD:270770"
     CDS             1..663
                     /gene="PRKCQ"
                     /coded_by="XM_054083567.1:544..2535"
                     /db_xref="GeneID:104066507"
ORIGIN      
        1 myppwnstfd ahinngrvmh ivvkdksaem vsettvelkv laerckksng kteiwlelkp
       61 qgrmlmnary fleisdakdl adcetegffs lhqrrgaikq akihnvkche ftatffpqpt
      121 fcsvchefvw glnkqgyqcr qcnaaihkkc idkviakctg sainsretmf hkerfkidmp
      181 hrfkvynyks ptfcehcgtl lwglarqglk cdacgmnvhh kcqtkvanlc gvnqklmaea
      241 lamiestqqa rsqrdteqis rdgpleigfp vpvkevtplq alpasttgkk epqgiswetp
      301 vedtmkgesl iesdlggeqp qeqqehqmql kltiedfvlh kmlgkgsfgk vflaelkstd
      361 qyfavkalkk dvvlmdddve ctmvekrvls lawehpflth vfctfqtken lffvmeylng
      421 gdlmfhiqsc hkfdlpratf yaaeiicglq flhskgiiyr dlkldnvlld neghikiadf
      481 gmckenmfgd aktstfcgtp dyiapeillg qkyntsvdww sfgvllyeml igqspfhgqd
      541 eeelfqsirm dnpfyprwld kdakdilvkl fvreperrlg argnirqhaf freinweale
      601 errmeppfkp rvkspsdcsn fdkeflnekp rlscadrali nsmdqnmfsn fsfvnpkmek
      661 ifs
//
LOCUS       XP_009563418             603 aa            linear   VRT 09-MAR-2023
DEFINITION  NADP-dependent malic enzyme, mitochondrial isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009563418
VERSION     XP_009563418.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565123.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009563418.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..603
                     /product="NADP-dependent malic enzyme, mitochondrial
                     isoform X1"
                     /calculated_mol_wt=66736
     Region          23..587
                     /region_name="PLN03129"
                     /note="NADP-dependent malic enzyme; Provisional"
                     /db_xref="CDD:215594"
     CDS             1..603
                     /gene="LOC104062980"
                     /coded_by="XM_009565123.2:146..1957"
                     /db_xref="GeneID:104062980"
ORIGIN      
        1 mvpgsgrllr lagaggtqll llqhtrrrvc haggspppqg ralvakkrgy ditrnphlnk
       61 gmaftlqerl qlgihgllpp cflsqdvqvl rvmknyenks ndldkyivlm tlqdrneklf
      121 yrvltsdier fmpivytptv glacqqygfa frrprglfit ihdkghiatm lnswpeenik
      181 aivvtdgeri lglgdlgsyg mgipvgklal ytacggvnpq qclpvlldvg tdneallsdp
      241 lyiglkhkrv rgkeydelid efmqavtdky gmncliqfed fananafrll nkyrnryctf
      301 nddiqgtasv avagifaalr itknklsdhk fvfqgageaa mgiahlilma mekegisred
      361 aikkiwmvds kglivkgrsh lnhekemfaq dhpsvntlee vvekvkptai igvaaiagaf
      421 sekilkdmaa fnerpiifal snptskaect aeqcyrlteg rgifasgspf skvtlssgqt
      481 ffpgqgnnay vfpgvalgvi acgvrhisdd iflitaesia aevtehhlae grlyppldti
      541 revslkiavk ivdwaykqgl aswypepadk eafvkqlvys pdydsfvidd yrwpptamqt
      601 qdi
//
LOCUS       XP_053939571             512 aa            linear   VRT 09-MAR-2023
DEFINITION  NADP-dependent malic enzyme, mitochondrial isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053939571
VERSION     XP_053939571.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083596.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..512
                     /product="NADP-dependent malic enzyme, mitochondrial
                     isoform X2"
                     /calculated_mol_wt=57139
     Region          23..>459
                     /region_name="PLN03129"
                     /note="NADP-dependent malic enzyme; Provisional"
                     /db_xref="CDD:215594"
     CDS             1..512
                     /gene="LOC104062980"
                     /coded_by="XM_054083596.1:147..1685"
                     /db_xref="GeneID:104062980"
ORIGIN      
        1 mvpgsgrllr lagaggtqll llqhtrrrvc haggspppqg ralvakkrgy ditrnphlnk
       61 gmaftlqerl qlgihgllpp cflsqdvqvl rvmknyenks ndldkyivlm tlqdrneklf
      121 yrvltsdier fmpivytptv glacqqygfa frrprglfit ihdkghiatm lnswpeenik
      181 aivvtdgeri lglgdlgsyg mgipvgklal ytacggvnpq qclpvlldvg tdneallsdp
      241 lyiglkhkrv rgkeydelid efmqavtdky gmncliqfed fananafrll nkyrnryctf
      301 nddiqgtasv avagifaalr itknklsdhk fvfqgageaa mgiahlilma mekegisred
      361 aikkiwmvds kglivkgrsh lnhekemfaq dhpsvntlee vvekvkptai igvaaiagaf
      421 sekilkdmaa fnerpiifal snptskaect aeqcyrltei vdwaykqgla swypepadke
      481 afvkqlvysp dydsfviddy rwpptamqtq di
//
LOCUS       XP_053939582             336 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 19 isoform X1 [Cuculus canorus].
ACCESSION   XP_053939582
VERSION     XP_053939582.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083607.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..336
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..336
                     /product="transmembrane protein 19 isoform X1"
                     /calculated_mol_wt=36703
     Region          59..322
                     /region_name="DUF92"
                     /note="Integral membrane protein DUF92; pfam01940"
                     /db_xref="CDD:460391"
     CDS             1..336
                     /gene="TMEM19"
                     /coded_by="XM_054083607.1:259..1269"
                     /db_xref="GeneID:104063927"
ORIGIN      
        1 msysdedsfk eclkmmvnii ilnlligisv vfwvlsmtvs tyydtlhpis pwrwlfsvfv
       61 plmiatqglk kksldysgal gglvvgfilt vanysfftsl fvffvtsskl tkwkknikkq
      121 idseykeggq rnwvqvfcng gvptelavly miengpgeip idfskqytas wmclsllgal
      181 acsagdtwas eigsvmsksk prlittwekv pvgtnggvtl vgllssflgg mvvgiayflt
      241 qlifvtdlei sapqwpiivf gaaagllgsi vdsylgatmq ysgfdqnigm vvnhqtkdsk
      301 hisgkpildn navnlfssii ialalpgvar yfwprg
//
LOCUS       XP_053939586             336 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 19 isoform X1 [Cuculus canorus].
ACCESSION   XP_053939586
VERSION     XP_053939586.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083611.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..336
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..336
                     /product="transmembrane protein 19 isoform X1"
                     /calculated_mol_wt=36703
     Region          59..322
                     /region_name="DUF92"
                     /note="Integral membrane protein DUF92; pfam01940"
                     /db_xref="CDD:460391"
     CDS             1..336
                     /gene="TMEM19"
                     /coded_by="XM_054083611.1:133..1143"
                     /db_xref="GeneID:104063927"
ORIGIN      
        1 msysdedsfk eclkmmvnii ilnlligisv vfwvlsmtvs tyydtlhpis pwrwlfsvfv
       61 plmiatqglk kksldysgal gglvvgfilt vanysfftsl fvffvtsskl tkwkknikkq
      121 idseykeggq rnwvqvfcng gvptelavly miengpgeip idfskqytas wmclsllgal
      181 acsagdtwas eigsvmsksk prlittwekv pvgtnggvtl vgllssflgg mvvgiayflt
      241 qlifvtdlei sapqwpiivf gaaagllgsi vdsylgatmq ysgfdqnigm vvnhqtkdsk
      301 hisgkpildn navnlfssii ialalpgvar yfwprg
//
LOCUS       XP_053939593             336 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 19 isoform X1 [Cuculus canorus].
ACCESSION   XP_053939593
VERSION     XP_053939593.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083618.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..336
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..336
                     /product="transmembrane protein 19 isoform X1"
                     /calculated_mol_wt=36703
     Region          59..322
                     /region_name="DUF92"
                     /note="Integral membrane protein DUF92; pfam01940"
                     /db_xref="CDD:460391"
     CDS             1..336
                     /gene="TMEM19"
                     /coded_by="XM_054083618.1:214..1224"
                     /db_xref="GeneID:104063927"
ORIGIN      
        1 msysdedsfk eclkmmvnii ilnlligisv vfwvlsmtvs tyydtlhpis pwrwlfsvfv
       61 plmiatqglk kksldysgal gglvvgfilt vanysfftsl fvffvtsskl tkwkknikkq
      121 idseykeggq rnwvqvfcng gvptelavly miengpgeip idfskqytas wmclsllgal
      181 acsagdtwas eigsvmsksk prlittwekv pvgtnggvtl vgllssflgg mvvgiayflt
      241 qlifvtdlei sapqwpiivf gaaagllgsi vdsylgatmq ysgfdqnigm vvnhqtkdsk
      301 hisgkpildn navnlfssii ialalpgvar yfwprg
//
LOCUS       XP_053939598             332 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 19 isoform X2 [Cuculus canorus].
ACCESSION   XP_053939598
VERSION     XP_053939598.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083623.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..332
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..332
                     /product="transmembrane protein 19 isoform X2"
                     /calculated_mol_wt=36188
     Region          55..318
                     /region_name="DUF92"
                     /note="Integral membrane protein DUF92; pfam01940"
                     /db_xref="CDD:460391"
     CDS             1..332
                     /gene="TMEM19"
                     /coded_by="XM_054083623.1:263..1261"
                     /db_xref="GeneID:104063927"
ORIGIN      
        1 msysdedsfk eclkmmvnii ilnlligisv vfwvlsmtvn tlhpispwrw lfsvfvplmi
       61 atqglkkksl dysgalgglv vgfiltvany sfftslfvff vtsskltkwk knikkqidse
      121 ykeggqrnwv qvfcnggvpt elavlymien gpgeipidfs kqytaswmcl sllgalacsa
      181 gdtwaseigs vmskskprli ttwekvpvgt nggvtlvgll ssflggmvvg iayfltqlif
      241 vtdleisapq wpiivfgaaa gllgsivdsy lgatmqysgf dqnigmvvnh qtkdskhisg
      301 kpildnnavn lfssiiiala lpgvaryfwp rg
//
LOCUS       XP_053939605             274 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 19 isoform X3 [Cuculus canorus].
ACCESSION   XP_053939605
VERSION     XP_053939605.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083630.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..274
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..274
                     /product="transmembrane protein 19 isoform X3"
                     /calculated_mol_wt=29430
     Region          2..260
                     /region_name="DUF92"
                     /note="Integral membrane protein DUF92; pfam01940"
                     /db_xref="CDD:460391"
     CDS             1..274
                     /gene="TMEM19"
                     /coded_by="XM_054083630.1:194..1018"
                     /db_xref="GeneID:104063927"
ORIGIN      
        1 miatqglkkk sldysgalgg lvvgfiltva nysfftslfv ffvtsskltk wkknikkqid
       61 seykeggqrn wvqvfcnggv ptelavlymi engpgeipid fskqytaswm clsllgalac
      121 sagdtwasei gsvmskskpr littwekvpv gtnggvtlvg llssflggmv vgiayfltql
      181 ifvtdleisa pqwpiivfga aagllgsivd sylgatmqys gfdqnigmvv nhqtkdskhi
      241 sgkpildnna vnlfssiiia lalpgvaryf wprg
//
LOCUS       XP_053939680             386 aa            linear   VRT 09-MAR-2023
DEFINITION  adiponectin receptor protein 2 [Cuculus canorus].
ACCESSION   XP_053939680
VERSION     XP_053939680.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083705.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..386
                     /product="adiponectin receptor protein 2"
                     /calculated_mol_wt=43696
     Region          139..362
                     /region_name="HlyIII"
                     /note="Haemolysin-III related; pfam03006"
                     /db_xref="CDD:427098"
     CDS             1..386
                     /gene="ADIPOR2"
                     /coded_by="XM_054083705.1:156..1316"
                     /db_xref="GeneID:104055903"
ORIGIN      
        1 mnelteldna rypepglrlr kghmsdtatt qtafeedsse qrlllveppl csdqencsed
       61 dkhndespqe degfmgmspl lqahhamerm eefvckvweg rwrviphdvl pdwlkdndyl
      121 lhghrppmps fracfksifr ihtetgniwt hllgcvfflc lgifymfrpn msfvapvqek
      181 vvvglfflga ilclsfswlf htvychsegv srlfskldys giallimgsf vpwlyysfyc
      241 npqpcfiyli vicvlgiaai ivsqwdmfat peyrgvragv flglglsgvi ptlhfviseg
      301 llkaatmgqi gwlalmacly itgaalyaar iperffpgkc diwfhshqlf hvfvvagafv
      361 hfhgvsnlqe frftvgggct eedgmq
//
LOCUS       XP_053939690             386 aa            linear   VRT 09-MAR-2023
DEFINITION  adiponectin receptor protein 2 [Cuculus canorus].
ACCESSION   XP_053939690
VERSION     XP_053939690.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083715.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..386
                     /product="adiponectin receptor protein 2"
                     /calculated_mol_wt=43696
     Region          139..362
                     /region_name="HlyIII"
                     /note="Haemolysin-III related; pfam03006"
                     /db_xref="CDD:427098"
     CDS             1..386
                     /gene="ADIPOR2"
                     /coded_by="XM_054083715.1:200..1360"
                     /db_xref="GeneID:104055903"
ORIGIN      
        1 mnelteldna rypepglrlr kghmsdtatt qtafeedsse qrlllveppl csdqencsed
       61 dkhndespqe degfmgmspl lqahhamerm eefvckvweg rwrviphdvl pdwlkdndyl
      121 lhghrppmps fracfksifr ihtetgniwt hllgcvfflc lgifymfrpn msfvapvqek
      181 vvvglfflga ilclsfswlf htvychsegv srlfskldys giallimgsf vpwlyysfyc
      241 npqpcfiyli vicvlgiaai ivsqwdmfat peyrgvragv flglglsgvi ptlhfviseg
      301 llkaatmgqi gwlalmacly itgaalyaar iperffpgkc diwfhshqlf hvfvvagafv
      361 hfhgvsnlqe frftvgggct eedgmq
//
LOCUS       XP_053939697             386 aa            linear   VRT 09-MAR-2023
DEFINITION  adiponectin receptor protein 2 [Cuculus canorus].
ACCESSION   XP_053939697
VERSION     XP_053939697.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083722.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..386
                     /product="adiponectin receptor protein 2"
                     /calculated_mol_wt=43696
     Region          139..362
                     /region_name="HlyIII"
                     /note="Haemolysin-III related; pfam03006"
                     /db_xref="CDD:427098"
     CDS             1..386
                     /gene="ADIPOR2"
                     /coded_by="XM_054083722.1:177..1337"
                     /db_xref="GeneID:104055903"
ORIGIN      
        1 mnelteldna rypepglrlr kghmsdtatt qtafeedsse qrlllveppl csdqencsed
       61 dkhndespqe degfmgmspl lqahhamerm eefvckvweg rwrviphdvl pdwlkdndyl
      121 lhghrppmps fracfksifr ihtetgniwt hllgcvfflc lgifymfrpn msfvapvqek
      181 vvvglfflga ilclsfswlf htvychsegv srlfskldys giallimgsf vpwlyysfyc
      241 npqpcfiyli vicvlgiaai ivsqwdmfat peyrgvragv flglglsgvi ptlhfviseg
      301 llkaatmgqi gwlalmacly itgaalyaar iperffpgkc diwfhshqlf hvfvvagafv
      361 hfhgvsnlqe frftvgggct eedgmq
//
LOCUS       XP_053939706             386 aa            linear   VRT 09-MAR-2023
DEFINITION  adiponectin receptor protein 2 [Cuculus canorus].
ACCESSION   XP_053939706
VERSION     XP_053939706.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083731.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..386
                     /product="adiponectin receptor protein 2"
                     /calculated_mol_wt=43696
     Region          139..362
                     /region_name="HlyIII"
                     /note="Haemolysin-III related; pfam03006"
                     /db_xref="CDD:427098"
     CDS             1..386
                     /gene="ADIPOR2"
                     /coded_by="XM_054083731.1:88..1248"
                     /db_xref="GeneID:104055903"
ORIGIN      
        1 mnelteldna rypepglrlr kghmsdtatt qtafeedsse qrlllveppl csdqencsed
       61 dkhndespqe degfmgmspl lqahhamerm eefvckvweg rwrviphdvl pdwlkdndyl
      121 lhghrppmps fracfksifr ihtetgniwt hllgcvfflc lgifymfrpn msfvapvqek
      181 vvvglfflga ilclsfswlf htvychsegv srlfskldys giallimgsf vpwlyysfyc
      241 npqpcfiyli vicvlgiaai ivsqwdmfat peyrgvragv flglglsgvi ptlhfviseg
      301 llkaatmgqi gwlalmacly itgaalyaar iperffpgkc diwfhshqlf hvfvvagafv
      361 hfhgvsnlqe frftvgggct eedgmq
//
LOCUS       XP_053939716             537 aa            linear   VRT 09-MAR-2023
DEFINITION  synembryn-B [Cuculus canorus].
ACCESSION   XP_053939716
VERSION     XP_053939716.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083741.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..537
                     /product="synembryn-B"
                     /calculated_mol_wt=60564
     Region          68..502
                     /region_name="Ric8"
                     /note="Guanine nucleotide exchange factor synembryn;
                     pfam10165"
                     /db_xref="CDD:462973"
     CDS             1..537
                     /gene="RIC8B"
                     /coded_by="XM_054083741.1:29..1642"
                     /db_xref="GeneID:104063471"
ORIGIN      
        1 mevgavleav egrggaaeav ervlarynee nrgtfrfdpa dedkrkklce gilnilekdt
       61 ktscqvacle alrilsrdkk vlvpvttkrn mqilmrlakl dtvedslerv sefpviveal
      121 kclcniifns avaqklssel nlaamlcnll ekckdhqfad dikcfdlrll fllsllhtdi
      181 rsqlrqelqg vqvltqales slsvrwteky kavedrdrpp lslqetdcai ealkalfnvt
      241 ldswnvhsen eshqfrymaa ilrhclltmg ptedkteelh snainllsnv pvscldvlir
      301 plcqeetdik yngmnmgaiq vlldfmekri dkgssyregl tpvlslltec crthrnirkf
      361 ikaqvlpplr dvsnrpevgt tvrnklvrlm thvdlgvkqi aaeflfvlck ervdsllkyt
      421 gygnaaglla argllaggrg dhwysddedt dteeyksakp ninlitghle epmpnpmdem
      481 teeqkeyeam klvnmfdkls rdelikpmgv rpdgtmaple eavsqyhtnk qdssdsd
//
LOCUS       XP_053939730             586 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium-coupled neutral amino acid transporter 4 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053939730
VERSION     XP_053939730.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083755.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..586
                     /product="sodium-coupled neutral amino acid transporter 4
                     isoform X1"
                     /calculated_mol_wt=65723
     Region          73..482
                     /region_name="SLC5-6-like_sbd"
                     /note="Solute carrier families 5 and 6-like; solute
                     binding domain; cl00456"
                     /db_xref="CDD:444915"
     CDS             1..586
                     /gene="SLC38A4"
                     /coded_by="XM_054083755.1:260..2020"
                     /db_xref="GeneID:104062415"
ORIGIN      
        1 mdrmelqkvn ielddqsnsg eslednytem vdsekatirs pfssddaesq kfltngylgk
       61 kkleeyneey hrgrtsfgms sfnlsnaimg sgilglsyam antgiilfvv lllsvailsl
      121 ysvhlllkis keggsliyek lgekafgwpg kcgvfisvtm qnigamssyl fiikyelpev
      181 irafmklees sgewylngny lvilvtvgii lplcllkslg ylgytsgfsl tcmvffvsvv
      241 ifkksqipcp lpimdhgten wtatnntvpm hlvmlpnesf nsgvnfmmdn taghlpglee
      301 pkdtsfksgv eyeahsdisd tcqpkyfvfn srtayaipil afafvchpev lpiyselkdr
      361 srkrmqnvsn isitgmlimy llaalfgylt fygevedell htytrvytfd tlllsvrlav
      421 lvavtltvpi vlfpirssis ellfpkrpfs wirhfliaav ilafnnllvi fvptikdifg
      481 fivlasdhev heeppqsell edlgmqtpfr leketstmll sfsnfvlqrg sqfappcllh
      541 lcqhaglcqe drrrvctswv qfihplfntc flgssrprsa clssvd
//
LOCUS       XP_053939738             586 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium-coupled neutral amino acid transporter 4 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053939738
VERSION     XP_053939738.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083763.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..586
                     /product="sodium-coupled neutral amino acid transporter 4
                     isoform X1"
                     /calculated_mol_wt=65723
     Region          73..482
                     /region_name="SLC5-6-like_sbd"
                     /note="Solute carrier families 5 and 6-like; solute
                     binding domain; cl00456"
                     /db_xref="CDD:444915"
     CDS             1..586
                     /gene="SLC38A4"
                     /coded_by="XM_054083763.1:292..2052"
                     /db_xref="GeneID:104062415"
ORIGIN      
        1 mdrmelqkvn ielddqsnsg eslednytem vdsekatirs pfssddaesq kfltngylgk
       61 kkleeyneey hrgrtsfgms sfnlsnaimg sgilglsyam antgiilfvv lllsvailsl
      121 ysvhlllkis keggsliyek lgekafgwpg kcgvfisvtm qnigamssyl fiikyelpev
      181 irafmklees sgewylngny lvilvtvgii lplcllkslg ylgytsgfsl tcmvffvsvv
      241 ifkksqipcp lpimdhgten wtatnntvpm hlvmlpnesf nsgvnfmmdn taghlpglee
      301 pkdtsfksgv eyeahsdisd tcqpkyfvfn srtayaipil afafvchpev lpiyselkdr
      361 srkrmqnvsn isitgmlimy llaalfgylt fygevedell htytrvytfd tlllsvrlav
      421 lvavtltvpi vlfpirssis ellfpkrpfs wirhfliaav ilafnnllvi fvptikdifg
      481 fivlasdhev heeppqsell edlgmqtpfr leketstmll sfsnfvlqrg sqfappcllh
      541 lcqhaglcqe drrrvctswv qfihplfntc flgssrprsa clssvd
//
LOCUS       XP_009562761             548 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium-coupled neutral amino acid transporter 4 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_009562761
VERSION     XP_009562761.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009564466.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..548
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..548
                     /product="sodium-coupled neutral amino acid transporter 4
                     isoform X2"
                     /calculated_mol_wt=61392
     Region          73..506
                     /region_name="SLC5-6-like_sbd"
                     /note="Solute carrier families 5 and 6-like; solute
                     binding domain; cl00456"
                     /db_xref="CDD:444915"
     CDS             1..548
                     /gene="SLC38A4"
                     /coded_by="XM_009564466.2:260..1906"
                     /db_xref="GeneID:104062415"
ORIGIN      
        1 mdrmelqkvn ielddqsnsg eslednytem vdsekatirs pfssddaesq kfltngylgk
       61 kkleeyneey hrgrtsfgms sfnlsnaimg sgilglsyam antgiilfvv lllsvailsl
      121 ysvhlllkis keggsliyek lgekafgwpg kcgvfisvtm qnigamssyl fiikyelpev
      181 irafmklees sgewylngny lvilvtvgii lplcllkslg ylgytsgfsl tcmvffvsvv
      241 ifkksqipcp lpimdhgten wtatnntvpm hlvmlpnesf nsgvnfmmdn taghlpglee
      301 pkdtsfksgv eyeahsdisd tcqpkyfvfn srtayaipil afafvchpev lpiyselkdr
      361 srkrmqnvsn isitgmlimy llaalfgylt fygevedell htytrvytfd tlllsvrlav
      421 lvavtltvpi vlfpirssis ellfpkrpfs wirhfliaav ilafnnllvi fvptikdifg
      481 figassatml ifilpaafyl rlvekeplrs pqkigalifl iigiifmfvs mtlividwiy
      541 nppssrhh
//
LOCUS       XP_053939744             521 aa            linear   VRT 09-MAR-2023
DEFINITION  amphoterin-induced protein 2 [Cuculus canorus].
ACCESSION   XP_053939744
VERSION     XP_053939744.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083769.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..521
                     /product="amphoterin-induced protein 2"
                     /calculated_mol_wt=58360
     Region          50..68
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          69..94
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <70..>229
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          96..117
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          118..141
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          142..165
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          166..192
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          193..221
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          299..379
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          345..349
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409421"
     Region          359..364
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409421"
     Region          372..375
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409421"
     CDS             1..521
                     /gene="AMIGO2"
                     /coded_by="XM_054083769.1:384..1949"
                     /db_xref="GeneID:104062416"
ORIGIN      
        1 mslnwqtist qlgvfrvnck glacllvftv svcgsapgmc ptacicasdi vsctnknlsr
       61 vpgnlhkcmk rldlsynrig vlepewvpal feklntliin hnsissintg sfsttpnlky
      121 ldlssnslkt lgspvfqelr alevlllynn qitqidssaf gglyklqkly lsynlisyfp
      181 ldlytgklkl tdlvlldisf nhiqlmpiqr lssvpakyls giylhgnpfy cdcmlhsmli
      241 fwyqrhfssv vdfkneytcs lrsdprgynk lpllhdnfln csestvnssf qafgfihdaq
      301 vgdrlivhcd srisdagthf vwvrpdnrll eperetdnfr vfrngsleit daqledsgly
      361 sciainkkrl lnetievrin vsnftvnrsh aheafntaft tlaacvasiv lvllylyltp
      421 cpcqckakrr krklnqssah psilnspppq elpadekkas tgkrvvflep vhepkhsqng
      481 kvklfpndnv vaesilkttr tksdsdsvns vfsdtpfmps t
//
LOCUS       XP_053939775             389 aa            linear   VRT 09-MAR-2023
DEFINITION  POU domain, class 4, transcription factor 1 [Cuculus canorus].
ACCESSION   XP_053939775
VERSION     XP_053939775.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083800.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..389
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..389
                     /product="POU domain, class 4, transcription factor 1"
                     /calculated_mol_wt=40488
     Region          230..307
                     /region_name="POU"
                     /note="Found in Pit-Oct-Unc transcription factors;
                     smart00352"
                     /db_xref="CDD:197673"
     Region          326..382
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     CDS             1..389
                     /gene="POU4F1"
                     /coded_by="XM_054083800.1:332..1501"
                     /db_xref="GeneID:128854070"
ORIGIN      
        1 mmsmnskqph famhptlpeh kypslhssse airraclptp plqsnifasl detllaraea
       61 laavdiavsq gkshpfkpda tyhtmnsvpc tststvplah hhhhhhhhhq alepgdlldh
      121 itspslalmp gggggggggg ghdgaggggg gagggggggg ggggggglis tsahphshmh
      181 glghlshpaa mnmpsglphp glvaahhgaa gqvasaaavv gaaglasicd sdtdprelea
      241 faerfkqrri klgvtqadvg salanlkipg vgslsqstic rfesltlshn nmialkpilq
      301 awleeaegaq rekmnkpelf nggekkrkrt siaapekrsl eayfavqprp ssekiaaiae
      361 kldlkknvvr vwfcnqrqkq krmkfsaty
//
LOCUS       XP_053939798             226 aa            linear   VRT 09-MAR-2023
DEFINITION  MICOS complex subunit MIC26 isoform X1 [Cuculus canorus].
ACCESSION   XP_053939798
VERSION     XP_053939798.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083823.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..226
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..226
                     /product="MICOS complex subunit MIC26 isoform X1"
                     /calculated_mol_wt=25038
     Region          49..186
                     /region_name="ApoO"
                     /note="Apolipoprotein O; pfam09769"
                     /db_xref="CDD:462891"
     CDS             1..226
                     /gene="APOO"
                     /coded_by="XM_054083823.1:16..696"
                     /db_xref="GeneID:104059420"
ORIGIN      
        1 mrkcilqllm virlgaapvs lsllsiqvya ssseketskk ellkieelsl yssparetky
       61 venpqtqlee gvsrlrhvme pytawcqdly akampkleta vehgregfef lqnppagfyp
      121 rlgvigfagi vglflargsk ikklvypagl mgigasmyyp qqtvsiakva gthlydwslq
      181 gyiaveslwk dnskkkksvk ksdkgdaegd kpleihaisn eeraqk
//
LOCUS       XP_053939808             224 aa            linear   VRT 09-MAR-2023
DEFINITION  MICOS complex subunit MIC26 isoform X2 [Cuculus canorus].
ACCESSION   XP_053939808
VERSION     XP_053939808.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083833.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..224
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..224
                     /product="MICOS complex subunit MIC26 isoform X2"
                     /calculated_mol_wt=24607
     Region          47..184
                     /region_name="ApoO"
                     /note="Apolipoprotein O; pfam09769"
                     /db_xref="CDD:462891"
     CDS             1..224
                     /gene="APOO"
                     /coded_by="XM_054083833.1:90..764"
                     /db_xref="GeneID:104059420"
ORIGIN      
        1 mpgaamlkvi rlgaapvsls llsiqvyass seketskkel lkieelslys sparetkyve
       61 npqtqleegv srlrhvmepy tawcqdlyak ampkletave hgregfeflq nppagfyprl
      121 gvigfagivg lflargskik klvypaglmg igasmyypqq tvsiakvagt hlydwslqgy
      181 iaveslwkdn skkkksvkks dkgdaegdkp leihaisnee raqk
//
LOCUS       XP_053939828             255 aa            linear   VRT 09-MAR-2023
DEFINITION  splicing regulator RBM11 isoform X1 [Cuculus canorus].
ACCESSION   XP_053939828
VERSION     XP_053939828.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083853.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..255
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..255
                     /product="splicing regulator RBM11 isoform X1"
                     /calculated_mol_wt=29115
     Region          11..85
                     /region_name="RRM_RBM11"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     RNA-binding protein 11 (RBM11); cd12593"
                     /db_xref="CDD:410006"
     Region          <14..195
                     /region_name="PABP-1234"
                     /note="polyadenylate binding protein, human types 1, 2, 3,
                     4 family; TIGR01628"
                     /db_xref="CDD:130689"
     CDS             1..255
                     /gene="RBM11"
                     /coded_by="XM_054083853.1:38..805"
                     /db_xref="GeneID:104061595"
ORIGIN      
        1 mssagrgeea drtlfvgnle srvreeilye lflqagpltk vtickdkegk pksfgfvcfk
       61 hkesvpyaia llngirlygr pikvqyrfgs shsselnspt hgfenytdly spsyrcqeay
      121 gnppfpltpf pmnnslphey sgfqkmmnhf laqqytvqsp mgqqfpyyqm tpplpsnlsf
      181 svypnqaanf ksaqssfela lphssdcevh hvdestskrk reqqscesds sieddkvrqr
      241 erdqkykrka kkkth
//
LOCUS       XP_053939838             226 aa            linear   VRT 09-MAR-2023
DEFINITION  splicing regulator RBM11 isoform X2 [Cuculus canorus].
ACCESSION   XP_053939838
VERSION     XP_053939838.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083863.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..226
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..226
                     /product="splicing regulator RBM11 isoform X2"
                     /calculated_mol_wt=25860
     Region          <5..56
                     /region_name="RRM_SF"
                     /note="RNA recognition motif (RRM) superfamily; cl17169"
                     /db_xref="CDD:473069"
     Region          <7..166
                     /region_name="PABP-1234"
                     /note="polyadenylate binding protein, human types 1, 2, 3,
                     4 family; TIGR01628"
                     /db_xref="CDD:130689"
     CDS             1..226
                     /gene="RBM11"
                     /coded_by="XM_054083863.1:1744..2424"
                     /db_xref="GeneID:104061595"
ORIGIN      
        1 mrnnkagplt kvtickdkeg kpksfgfvcf khkesvpyai allngirlyg rpikvqyrfg
       61 sshsselnsp thgfenytdl yspsyrcqea ygnppfpltp fpmnnslphe ysgfqkmmnh
      121 flaqqytvqs pmgqqfpyyq mtpplpsnls fsvypnqaan fksaqssfel alphssdcev
      181 hhvdestskr kreqqscesd ssieddkvrq rerdqkykrk akkkth
//
LOCUS       XP_053939849             226 aa            linear   VRT 09-MAR-2023
DEFINITION  splicing regulator RBM11 isoform X2 [Cuculus canorus].
ACCESSION   XP_053939849
VERSION     XP_053939849.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083874.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..226
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..226
                     /product="splicing regulator RBM11 isoform X2"
                     /calculated_mol_wt=25860
     Region          <5..56
                     /region_name="RRM_SF"
                     /note="RNA recognition motif (RRM) superfamily; cl17169"
                     /db_xref="CDD:473069"
     Region          <7..166
                     /region_name="PABP-1234"
                     /note="polyadenylate binding protein, human types 1, 2, 3,
                     4 family; TIGR01628"
                     /db_xref="CDD:130689"
     CDS             1..226
                     /gene="RBM11"
                     /coded_by="XM_054083874.1:923..1603"
                     /db_xref="GeneID:104061595"
ORIGIN      
        1 mrnnkagplt kvtickdkeg kpksfgfvcf khkesvpyai allngirlyg rpikvqyrfg
       61 sshsselnsp thgfenytdl yspsyrcqea ygnppfpltp fpmnnslphe ysgfqkmmnh
      121 flaqqytvqs pmgqqfpyyq mtpplpsnls fsvypnqaan fksaqssfel alphssdcev
      181 hhvdestskr kreqqscesd ssieddkvrq rerdqkykrk akkkth
//
LOCUS       XP_053939859             226 aa            linear   VRT 09-MAR-2023
DEFINITION  splicing regulator RBM11 isoform X2 [Cuculus canorus].
ACCESSION   XP_053939859
VERSION     XP_053939859.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083884.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..226
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..226
                     /product="splicing regulator RBM11 isoform X2"
                     /calculated_mol_wt=25860
     Region          <5..56
                     /region_name="RRM_SF"
                     /note="RNA recognition motif (RRM) superfamily; cl17169"
                     /db_xref="CDD:473069"
     Region          <7..166
                     /region_name="PABP-1234"
                     /note="polyadenylate binding protein, human types 1, 2, 3,
                     4 family; TIGR01628"
                     /db_xref="CDD:130689"
     CDS             1..226
                     /gene="RBM11"
                     /coded_by="XM_054083884.1:789..1469"
                     /db_xref="GeneID:104061595"
ORIGIN      
        1 mrnnkagplt kvtickdkeg kpksfgfvcf khkesvpyai allngirlyg rpikvqyrfg
       61 sshsselnsp thgfenytdl yspsyrcqea ygnppfpltp fpmnnslphe ysgfqkmmnh
      121 flaqqytvqs pmgqqfpyyq mtpplpsnls fsvypnqaan fksaqssfel alphssdcev
      181 hhvdestskr kreqqscesd ssieddkvrq rerdqkykrk akkkth
//
LOCUS       XP_053939874             910 aa            linear   VRT 09-MAR-2023
DEFINITION  anoctamin-6 [Cuculus canorus].
ACCESSION   XP_053939874
VERSION     XP_053939874.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083899.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..910
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..910
                     /product="anoctamin-6"
                     /calculated_mol_wt=105615
     Region          64..284
                     /region_name="Anoct_dimer"
                     /note="dimerization domain of Ca+-activated
                     chloride-channel, anoctamin; pfam16178"
                     /db_xref="CDD:465044"
     Region          287..870
                     /region_name="Anoctamin"
                     /note="Calcium-activated chloride channel; pfam04547"
                     /db_xref="CDD:461349"
     CDS             1..910
                     /gene="ANO6"
                     /coded_by="XM_054083899.1:48..2780"
                     /db_xref="GeneID:104062409"
ORIGIN      
        1 mslenhdvll dlereeeeee eeedgetvle lnqvifptyg tvpdqqnlht pewadlddkp
       61 dslffsdgqr ridfvlvyed enkktthkrs drkkqkrkrq vyesnlinng lqleatrsvl
      121 deklifvkvh apwevlctya evmhiklplq psdlktrdsa fncfsrffrv deniiipeqe
      181 fftapfqkeh lsnfyiqdkd tffnpatrsr ivhfilsrve yatknnvkkf ginklldtgi
      241 ykaafplhds sfrhpstdpd cpseryllyr ewahpknifk lqpldfirky ygekigiyfa
      301 wlgfytnmli vaavvgvgcf lygcltkdnc twsqevcdpn iggniimcpq cdkvctywnl
      361 titcesskkl cifdsfgtlv favfmgiwvt lflefwkrrq aeleyewdtv eyleqeeqvr
      421 peyeaqctrv vmneitqqee hvpytacgkc irmtfctsav ffwilliias vigiivyrls
      481 vflvfsstls qhisgteair kyltpqtats vtaslisfvv imvlnviyek vailitdfel
      541 prtqtdyens lttkmflfqf vnyysscfyi affkgkfvgh pgnpvywlgk yrieecdpgg
      601 cllelttqla iivggkaiwn niqevllpwv knligrhcaa arsekvvprw eqdyhlqpig
      661 klglfyeyle mviqfgfvtl fvasfplapl lalinnmlei rldawklttq frrmvpqkaq
      721 digawqpilq giailavvtn amiiaftsdm iprlvyywsf svppygnhss ytmkgyinst
      781 lsvfnvsdfk naskpfspwf gkqttcryrd lryppghphq yehniyywhv vaaklafiiv
      841 mehviyfvkf iisylipdvs qktkskikre kyltqkllhe ndlkvvkkam akiadkiikg
      901 vdstlrskae
//
LOCUS       XP_053939889             192 aa            linear   VRT 09-MAR-2023
DEFINITION  translation initiation factor IF-2-like [Cuculus canorus].
ACCESSION   XP_053939889
VERSION     XP_053939889.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083914.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..192
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..192
                     /product="translation initiation factor IF-2-like"
                     /calculated_mol_wt=20210
     CDS             1..192
                     /gene="LOC128854076"
                     /coded_by="XM_054083914.1:21..599"
                     /db_xref="GeneID:128854076"
ORIGIN      
        1 mlpfprehgt lweiaaapkg lrhhkdgisg spaiprgslp gegkervkfs lllcelspcr
       61 chqggsprea ppvphrqpqt kgpllshgkp trscrssrss stswfsrlil akplprcplp
      121 ggspprapap eaerraapsr hrspsrscpk pagtaapgea appssqpsrg crsgrtgpga
      181 eggtrrarnr vl
//
LOCUS       XP_053939930             290 aa            linear   VRT 09-MAR-2023
DEFINITION  oligodendrocyte transcription factor 2 [Cuculus canorus].
ACCESSION   XP_053939930
VERSION     XP_053939930.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083955.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..290
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..290
                     /product="oligodendrocyte transcription factor 2"
                     /calculated_mol_wt=29978
     Region          87..171
                     /region_name="bHLH_TS_OLIG2"
                     /note="basic helix-loop-helix (bHLH) domain found in
                     oligodendrocyte transcription factor 2 (Oligo2) and
                     similar proteins; cd18940"
                     /db_xref="CDD:381510"
     Site            order(102,106,108..110,112,117,137..140)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381510"
     Site            order(115..116,119..120,122..123,141,144,148,150..151,155,
                     157..158)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381510"
     Region          <182..>288
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     CDS             1..290
                     /gene="OLIG2"
                     /coded_by="XM_054083955.1:103..975"
                     /db_xref="GeneID:104064791"
ORIGIN      
        1 mdsdaslvss rpsspepddl fltarnkggg ggftggavss stqsdsppel saelrsamsa
       61 agvvvvdklg fkssssssss sssssskkdk kqmtepelqq lrlkinsrer krmhdlniam
      121 dglrevmpya hgpsvrklsk iatlllarny ilmltnslee mkrlvseiyg ghhagfhpaa
      181 cpggmgahsa plpghpghpa shpvhhpilp paavssaslp gsglsavssi rpphgllksp
      241 staaaplgsg fqhwggmpcp csmcqvsapp hhhvsgmgta slprlttdtk
//
LOCUS       XP_053939948             205 aa            linear   VRT 09-MAR-2023
DEFINITION  methionine-R-sulfoxide reductase B3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053939948
VERSION     XP_053939948.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083973.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..205
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..205
                     /product="methionine-R-sulfoxide reductase B3 isoform X1"
                     /calculated_mol_wt=22301
     Region          56..185
                     /region_name="MsrB"
                     /note="Peptide methionine sulfoxide reductase MsrB
                     [Posttranslational modification, protein turnover,
                     chaperones]; COG0229"
                     /db_xref="CDD:439999"
     CDS             1..205
                     /gene="MSRB3"
                     /coded_by="XM_054083973.1:117..734"
                     /db_xref="GeneID:104061438"
ORIGIN      
        1 mfikllplff asgfvgedit vmsafnllhl vtksqpvalr acglpsgscr dkkdckvvfs
       61 qeelrkrltp lqyhvtqekg tesafegeyt hhkaqgiykc vvcgtplfks etkfdsnsgw
      121 psfydvispd aiafnddfsy gmhrieiscs qcgahlghif ddgprptgkr yctnsaslsf
      181 kpadknsage gssnaspaqt gkael
//
LOCUS       XP_009561679             198 aa            linear   VRT 09-MAR-2023
DEFINITION  methionine-R-sulfoxide reductase B3 isoform X2 [Cuculus canorus].
ACCESSION   XP_009561679
VERSION     XP_009561679.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563384.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561679.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..198
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..198
                     /product="methionine-R-sulfoxide reductase B3 isoform X2"
                     /calculated_mol_wt=21901
     Region          49..178
                     /region_name="MsrB"
                     /note="Peptide methionine sulfoxide reductase MsrB
                     [Posttranslational modification, protein turnover,
                     chaperones]; COG0229"
                     /db_xref="CDD:439999"
     CDS             1..198
                     /gene="MSRB3"
                     /coded_by="XM_009563384.2:16..612"
                     /db_xref="GeneID:104061438"
ORIGIN      
        1 mfvpcfhnvs cnfpiafhnv chqrctitdv ssrglkenkr scrdkkdckv vfsqeelrkr
       61 ltplqyhvtq ekgtesafeg eythhkaqgi ykcvvcgtpl fksetkfdsn sgwpsfydvi
      121 spdaiafndd fsygmhriei scsqcgahlg hifddgprpt gkryctnsas lsfkpadkns
      181 agegssnasp aqtgkael
//
LOCUS       XP_053939965             184 aa            linear   VRT 09-MAR-2023
DEFINITION  methionine-R-sulfoxide reductase B3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053939965
VERSION     XP_053939965.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054083990.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..184
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..184
                     /product="methionine-R-sulfoxide reductase B3 isoform X3"
                     /calculated_mol_wt=19974
     Region          35..164
                     /region_name="MsrB"
                     /note="Peptide methionine sulfoxide reductase MsrB
                     [Posttranslational modification, protein turnover,
                     chaperones]; COG0229"
                     /db_xref="CDD:439999"
     CDS             1..184
                     /gene="MSRB3"
                     /coded_by="XM_054083990.1:248..802"
                     /db_xref="GeneID:104061438"
ORIGIN      
        1 msafnllhlv tksqpvalra cglpsgscrd kkdckvvfsq eelrkrltpl qyhvtqekgt
       61 esafegeyth hkaqgiykcv vcgtplfkse tkfdsnsgwp sfydvispda iafnddfsyg
      121 mhrieiscsq cgahlghifd dgprptgkry ctnsaslsfk padknsageg ssnaspaqtg
      181 kael
//
LOCUS       XP_053939976             184 aa            linear   VRT 09-MAR-2023
DEFINITION  methionine-R-sulfoxide reductase B3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053939976
VERSION     XP_053939976.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084001.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..184
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..184
                     /product="methionine-R-sulfoxide reductase B3 isoform X3"
                     /calculated_mol_wt=19974
     Region          35..164
                     /region_name="MsrB"
                     /note="Peptide methionine sulfoxide reductase MsrB
                     [Posttranslational modification, protein turnover,
                     chaperones]; COG0229"
                     /db_xref="CDD:439999"
     CDS             1..184
                     /gene="MSRB3"
                     /coded_by="XM_054084001.1:191..745"
                     /db_xref="GeneID:104061438"
ORIGIN      
        1 msafnllhlv tksqpvalra cglpsgscrd kkdckvvfsq eelrkrltpl qyhvtqekgt
       61 esafegeyth hkaqgiykcv vcgtplfkse tkfdsnsgwp sfydvispda iafnddfsyg
      121 mhrieiscsq cgahlghifd dgprptgkry ctnsaslsfk padknsageg ssnaspaqtg
      181 kael
//
LOCUS       XP_053939987             184 aa            linear   VRT 09-MAR-2023
DEFINITION  methionine-R-sulfoxide reductase B3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053939987
VERSION     XP_053939987.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084012.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..184
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..184
                     /product="methionine-R-sulfoxide reductase B3 isoform X3"
                     /calculated_mol_wt=19974
     Region          35..164
                     /region_name="MsrB"
                     /note="Peptide methionine sulfoxide reductase MsrB
                     [Posttranslational modification, protein turnover,
                     chaperones]; COG0229"
                     /db_xref="CDD:439999"
     CDS             1..184
                     /gene="MSRB3"
                     /coded_by="XM_054084012.1:229..783"
                     /db_xref="GeneID:104061438"
ORIGIN      
        1 msafnllhlv tksqpvalra cglpsgscrd kkdckvvfsq eelrkrltpl qyhvtqekgt
       61 esafegeyth hkaqgiykcv vcgtplfkse tkfdsnsgwp sfydvispda iafnddfsyg
      121 mhrieiscsq cgahlghifd dgprptgkry ctnsaslsfk padknsageg ssnaspaqtg
      181 kael
//
LOCUS       XP_053939994             172 aa            linear   VRT 09-MAR-2023
DEFINITION  methionine-R-sulfoxide reductase B3 isoform X4 [Cuculus canorus].
ACCESSION   XP_053939994
VERSION     XP_053939994.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084019.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..172
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..172
                     /product="methionine-R-sulfoxide reductase B3 isoform X4"
                     /calculated_mol_wt=18610
     Region          23..152
                     /region_name="MsrB"
                     /note="Peptide methionine sulfoxide reductase MsrB
                     [Posttranslational modification, protein turnover,
                     chaperones]; COG0229"
                     /db_xref="CDD:439999"
     CDS             1..172
                     /gene="MSRB3"
                     /coded_by="XM_054084019.1:119..637"
                     /db_xref="GeneID:104061438"
ORIGIN      
        1 mlagrragrc gaagscrdkk dckvvfsqee lrkrltplqy hvtqekgtes afegeythhk
       61 aqgiykcvvc gtplfksetk fdsnsgwpsf ydvispdaia fnddfsygmh rieiscsqcg
      121 ahlghifddg prptgkryct nsaslsfkpa dknsagegss naspaqtgka el
//
LOCUS       XP_053940016             885 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal PAS domain-containing protein 2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053940016
VERSION     XP_053940016.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084041.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..885
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..885
                     /product="neuronal PAS domain-containing protein 2 isoform
                     X1"
                     /calculated_mol_wt=97928
     Region          91..167
                     /region_name="bHLH-PAS_NPAS2_PASD4"
                     /note="basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS)
                     domain found in neuronal PAS domain-containing protein 2
                     (NPAS2) and similar proteins; cd19737"
                     /db_xref="CDD:381580"
     Site            order(101,104..105,108..109,111..112,116,134..135)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381580"
     Site            order(114..115,118..119,121..122,125..126,135..136,
                     139..140,143,146..147,149)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381580"
     Region          174..285
                     /region_name="PAS"
                     /note="PAS fold; pfam00989"
                     /db_xref="CDD:395786"
     Region          339..442
                     /region_name="PAS_11"
                     /note="PAS domain; pfam14598"
                     /db_xref="CDD:464214"
     CDS             1..885
                     /gene="NPAS2"
                     /coded_by="XM_054084041.1:413..3070"
                     /db_xref="GeneID:104056698"
ORIGIN      
        1 mrhgtgreag gvpgssaark slpapepglp cgwssrhrsg rhrrsggiqp gdtggsraqv
       61 asadsssggg gwrflaalpq hprkncldnl mdedekdrak rasrnksekk rrdqfnvlik
      121 elssmlpgnt rkmdkttvle kvigflqkhn evsaqteise iqqdwkpsfl sneeftqlml
      181 ealdgfiiav ttggsiiyvs dsitpllghl pcdvldqnll nflpeqehse iykmlsscml
      241 mtdsassdyl ktdnelefyc hllrgslnpk efptyeyikf vgnfrsysnv pnstcngfde
      301 avprayrtsp gkqvcfvatv rlatpqflke mciveeplee ftsrhslewk flfldhrapp
      361 iigylpfevl gtsgydyyhi ddlellarch ehlmqfgkgk sccyrfltkg qqwiwlqthy
      421 yityhqwnsk pefivcthmv vsyadvrver rqemgleevs sevvssalkd sgasldpeqh
      481 fnaldigasi lgasrtpsas sksspkssht pksdpastpt kliaetntpl pktpstqqdl
      541 svhrlsqptt lqvslpsqtp cellppatlq nqpaplaqfs aqfsmfqtik dqleqrtril
      601 qanirwqqee lqkiqeqlcl vqdssiqmfl qqptvslsfs ntqqpepqql qqrsgaisqq
      661 qlapspqlqg qivssqtanq qalreasvis sqgpktpqlp agssrpsrrs ppfaaapagg
      721 saappagpaa gcshdqqlrl llsqpiqpmm pgscnarhps dlsmvgsqak ysqqmfqsle
      781 vqtssssspi vlmgqavlnq gftttppsqp sslppmqlqq qrylqvqtss slrneqpdsl
      841 llpsyspqqg nmgyhqppqq qqqqqltsrr snslsessnl pqtlr
//
LOCUS       XP_053940025             795 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal PAS domain-containing protein 2 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053940025
VERSION     XP_053940025.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084050.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..795
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..795
                     /product="neuronal PAS domain-containing protein 2 isoform
                     X2"
                     /calculated_mol_wt=88707
     Region          1..77
                     /region_name="bHLH-PAS_NPAS2_PASD4"
                     /note="basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS)
                     domain found in neuronal PAS domain-containing protein 2
                     (NPAS2) and similar proteins; cd19737"
                     /db_xref="CDD:381580"
     Site            order(11,14..15,18..19,21..22,26,44..45)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381580"
     Site            order(24..25,28..29,31..32,35..36,45..46,49..50,53,56..57,
                     59)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381580"
     Region          84..195
                     /region_name="PAS"
                     /note="PAS fold; pfam00989"
                     /db_xref="CDD:395786"
     Region          249..352
                     /region_name="PAS_11"
                     /note="PAS domain; pfam14598"
                     /db_xref="CDD:464214"
     CDS             1..795
                     /gene="NPAS2"
                     /coded_by="XM_054084050.1:253..2640"
                     /db_xref="GeneID:104056698"
ORIGIN      
        1 mdedekdrak rasrnksekk rrdqfnvlik elssmlpgnt rkmdkttvle kvigflqkhn
       61 evsaqteise iqqdwkpsfl sneeftqlml ealdgfiiav ttggsiiyvs dsitpllghl
      121 pcdvldqnll nflpeqehse iykmlsscml mtdsassdyl ktdnelefyc hllrgslnpk
      181 efptyeyikf vgnfrsysnv pnstcngfde avprayrtsp gkqvcfvatv rlatpqflke
      241 mciveeplee ftsrhslewk flfldhrapp iigylpfevl gtsgydyyhi ddlellarch
      301 ehlmqfgkgk sccyrfltkg qqwiwlqthy yityhqwnsk pefivcthmv vsyadvrver
      361 rqemgleevs sevvssalkd sgasldpeqh fnaldigasi lgasrtpsas sksspkssht
      421 pksdpastpt kliaetntpl pktpstqqdl svhrlsqptt lqvslpsqtp cellppatlq
      481 nqpaplaqfs aqfsmfqtik dqleqrtril qanirwqqee lqkiqeqlcl vqdssiqmfl
      541 qqptvslsfs ntqqpepqql qqrsgaisqq qlapspqlqg qivssqtanq qalreasvis
      601 sqgpktpqlp agssrpsrrs ppfaaapagg saappagpaa gcshdqqlrl llsqpiqpmm
      661 pgscnarhps dlsmvgsqak ysqqmfqsle vqtssssspi vlmgqavlnq gftttppsqp
      721 sslppmqlqq qrylqvqtss slrneqpdsl llpsyspqqg nmgyhqppqq qqqqqltsrr
      781 snslsessnl pqtlr
//
LOCUS       XP_009558844             210 aa            linear   VRT 09-MAR-2023
DEFINITION  achaete-scute homolog 1 [Cuculus canorus].
ACCESSION   XP_009558844
VERSION     XP_009558844.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560549.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009558844.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..210
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..210
                     /product="achaete-scute homolog 1"
                     /calculated_mol_wt=22226
     Region          89..159
                     /region_name="bHLH_TS_ASCL1_Mash1"
                     /note="basic helix-loop-helix (bHLH) domain found in
                     achaete-scute-like protein 1 (ASCL-1) and similar
                     proteins; cd19742"
                     /db_xref="CDD:381585"
     Site            order(94,98,100..102,104,109,127..130)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381585"
     Site            order(107..108,111..112,114..115,131,134,138,140..141,145,
                     147..148)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381585"
     CDS             1..210
                     /gene="ASCL1"
                     /coded_by="XM_009560549.2:49..681"
                     /db_xref="GeneID:104058957"
ORIGIN      
        1 masgsparma ggagqppflq pacffaaava aaappvpppq lspaggqpsp ggkssapraa
       61 krqrsaspel mrckrrlnfs gfgyslpqqq paavarrner ernrvklvnl gfatlrehvp
      121 ngaankkmsk vetlrsavey iralqqllde hdavsaafqa gvlsptisps yshdmnsmag
      181 spvssyssde gsydplspee qelldftswf
//
LOCUS       XP_009567032             283 aa            linear   VRT 09-MAR-2023
DEFINITION  stomatin-like protein 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_009567032
VERSION     XP_009567032.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568737.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567032.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..283
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..283
                     /product="stomatin-like protein 3 isoform X1"
                     /calculated_mol_wt=30731
     Region          73..271
                     /region_name="SPFH_like"
                     /note="core domain of the SPFH (stomatin, prohibitin,
                     flotillin, and HflK/C) superfamily; cl19107"
                     /db_xref="CDD:473137"
     CDS             1..283
                     /gene="STOML3"
                     /coded_by="XM_009568737.2:63..914"
                     /db_xref="GeneID:104066166"
ORIGIN      
        1 mdpqgeapkk nntehlvadr regigvcgwi lvslsfllvl itfpisiwac ikvireyera
       61 vvfrlgrvls kkakgpglil ilpctdtfvk vdlrtvtcni ppqeiltkda vttqvdgvly
      121 yrihsaisav anitdvhsat fllaqstlrk vlgtqslaql lsgreeiahs vkaildnate
      181 qwgikvarve ikdvripvam qramaaeaea arearakvva aegemnaskt lkqasivlse
      241 spaglqlryl qtlttlaaen nstivfplpi nmleslgqkn kkg
//
LOCUS       XP_053940053             238 aa            linear   VRT 09-MAR-2023
DEFINITION  stomatin-like protein 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053940053
VERSION     XP_053940053.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084078.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..238
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..238
                     /product="stomatin-like protein 3 isoform X2"
                     /calculated_mol_wt=25800
     Region          73..226
                     /region_name="SPFH_like"
                     /note="core domain of the SPFH (stomatin, prohibitin,
                     flotillin, and HflK/C) superfamily; cl19107"
                     /db_xref="CDD:473137"
     CDS             1..238
                     /gene="STOML3"
                     /coded_by="XM_054084078.1:63..779"
                     /db_xref="GeneID:104066166"
ORIGIN      
        1 mdpqgeapkk nntehlvadr regigvcgwi lvslsfllvl itfpisiwac ikvireyera
       61 vvfrlgrvls kkakgpglil ilpctdtfvk vdlrtvtcni ppqeiltkda vttqvdgvly
      121 yrihsaisav anitdvhsat fllaqstlrk vlgtqslaql lsgreeiahs vkvvaaegem
      181 nasktlkqas ivlsespagl qlrylqtltt laaennstiv fplpinmles lgqknkkg
//
LOCUS       XP_053940067            2926 aa            linear   VRT 09-MAR-2023
DEFINITION  cadherin EGF LAG seven-pass G-type receptor 1 [Cuculus canorus].
ACCESSION   XP_053940067
VERSION     XP_053940067.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084092.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2926
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2926
                     /product="cadherin EGF LAG seven-pass G-type receptor 1"
                     /calculated_mol_wt=323647
     Region          <23..>156
                     /region_name="PRK12323"
                     /note="DNA polymerase III subunit gamma/tau; cl46901"
                     /db_xref="CDD:481241"
     Region          133..234
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(140..141,196,198,230,232..233)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          242..342
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(249..250,303,305,338,340..341)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          351..448
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(357..358,410,412,444,446..447)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          456..564
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(463..464,527,529,560,562..563)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          572..666
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(579..580,632,634,662,664..665)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          674..769
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(681..682,732,734,765,767..768)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          778..875
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(784..785,838,840,871,873..874)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          883..977
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(890..891,943,945,973,975..976)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1244..1279
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; cd00054"
                     /db_xref="CDD:238011"
     Region          1287..1321
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; cd00054"
                     /db_xref="CDD:238011"
     Region          1324..1507
                     /region_name="LamG"
                     /note="Laminin G domain; Laminin G-like domains are
                     usually Ca++ mediated receptors that can have binding
                     sites for steroids, beta1 integrins, heparin, sulfatides,
                     fibulin-1, and alpha-dystroglycans. Proteins that contain
                     LamG domains serve a variety of...; cd00110"
                     /db_xref="CDD:238058"
     Region          1531..1565
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; cd00054"
                     /db_xref="CDD:238011"
     Region          1599..1729
                     /region_name="Laminin_G_2"
                     /note="Laminin G domain; pfam02210"
                     /db_xref="CDD:460494"
     Region          1754..1788
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; cd00054"
                     /db_xref="CDD:238011"
     Region          1791..1824
                     /region_name="EGF"
                     /note="EGF-like domain; pfam00008"
                     /db_xref="CDD:394967"
     Region          <1813..1918
                     /region_name="TNFRSF"
                     /note="Tumor necrosis factor receptor superfamily
                     (TNFRSF); cl22855"
                     /db_xref="CDD:473981"
     Region          1816..1865
                     /region_name="CRD2"
                     /note="CRD2 [structural motif]"
                     /db_xref="CDD:276900"
     Region          1883..1928
                     /region_name="EGF_Lam"
                     /note="Laminin-type epidermal growth factor-like domai;
                     smart00180"
                     /db_xref="CDD:214543"
     Site            order(1883,1885,1895,1902,1904,1913)
                     /site_type="active"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     Region          1932..1993
                     /region_name="HormR"
                     /note="Domain present in hormone receptors; smart00008"
                     /db_xref="CDD:214468"
     Region          2012..2259
                     /region_name="GAIN"
                     /note="GPCR-Autoproteolysis INducing (GAIN) domain;
                     pfam16489"
                     /db_xref="CDD:465137"
     Region          2285..2338
                     /region_name="GPS"
                     /note="G-protein-coupled receptor proteolytic site domain;
                     smart00303"
                     /db_xref="CDD:197639"
     Region          2343..2596
                     /region_name="7tmB2_CELSR1"
                     /note="Cadherin EGF LAG seven-pass G-type receptor 1,
                     member of the class B2 family of seven-transmembrane G
                     protein-coupled receptors; cd15991"
                     /db_xref="CDD:320657"
     Region          2345..2370
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320657"
     Site            order(2350,2354,2396,2399..2400,2403,2410,2417,2489..2490,
                     2492,2494,2546,2549,2561,2565)
                     /site_type="other"
                     /note="putative polypeptide ligand binding pocket
                     [polypeptide binding]"
                     /db_xref="CDD:320657"
     Region          2379..2401
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320657"
     Region          2410..2437
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320657"
     Region          2449..2469
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320657"
     Region          2486..2515
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320657"
     Region          2527..2554
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320657"
     Region          2558..2583
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320657"
     CDS             1..2926
                     /gene="CELSR1"
                     /coded_by="XM_054084092.1:1..8781"
                     /db_xref="GeneID:104056076"
ORIGIN      
        1 mprlpaaacl scaallcala pagggdphpp raapllhspp gaaarrdaae ptalppaghl
       61 raagaaprra lpaeprgspc prrarqrpdp hprgaapdpr gaaagcapre gggrrwarra
      121 rslnsppqfq lpsyqvsipe nepagtavil lraqdpdege agrlmysmea lfdersndyf
      181 sidaetggvv ttrsldretk dthvlkvtas dhgsprrrsa ttyltvtvsd tndhepvfeq
      241 peyresiren levgyevlti ratdgdapan anmlyrllep gaadgvfeid prsgvvrtra
      301 pvdreevsey hlvveandqg kdpgprsata mvhitveden dnypqfsekr ylvqvpedap
      361 vnsqilqvqa tdrdrgsnaq vhysivsgnl kgqfyihsfs gaidlinpld yetireytlr
      421 ikaqdggrpp linssgmvsv qvvdvndnap ifvstpfqat vlenvplgys vlhiqavdad
      481 sgenarleyk liemapstgg nsvasesgfp fqinnstgwi tvaaeldret venyhfgvea
      541 rdhgvpvmts sasvsitvld vndnnptfte kvyhlrlned aavgssvltl tavdrdvnsv
      601 vtyqitsgnt rnrfaitsqs ggglitlalp ldykqerqyv ltvtasdgtr fdtvqvfinv
      661 tdanthrpvf qsshytvsvs edkpigtsiv tisatdedtg enarityild dnipqfsidp
      721 dtgtittlme ldyedqasyt laitahdngi pqksdttyve ilildandna prflrdryqg
      781 svfedvplst svlqlsatdr dsglngrlly tfqggddgdg dfyieptsgv irtlrkldre
      841 nvavyslraf avdrgspplk asvdiqvtvl dindnppvfe kdefdifvee nspigsivar
      901 isaadpdegt naqimyqive gnipevfqld llngdltalm dldyesrtey vivvqatsap
      961 lvsratvhir lldqndnppv lqdfqilfnn yvtnksnsfp tgvigkipah dpdvsdslay
     1021 tfvqgnelnl llldsatgel klsrdldnnr plealmkvsv sdgvhsvtav ctlrvtiitd
     1081 dmltnsitvr lenmsqerfl spllslfveg vatvlstakd gifvfniqnd tdvssnilnv
     1141 tfsallpggi rnkffpsedl qeqiylnrtl ltmistqrvl pfddniclre pcenymkcvs
     1201 vlkfdssapf issntvlfrp ihpinglrcr cppgftgdyc eteidlcysn pcgnnglcrs
     1261 reggytcecy edytgeycev narsgrcapg lcknggtcvn lliggfkcec ppgeyerpyc
     1321 emttrsfppq sfitfkglrq rfhftislmf atrernalll yngrfnekhd fialeiieeq
     1381 iqltfsaget tttvapfvpg gvsdgqwhsv qvqyynkpni grlgiphgps gekvavvtvd
     1441 dcdtavavrf gslignytca aqgtqtgskk sldltgplll ggvpnlpedf pvhnrqfigc
     1501 mrnlsidskp idmasfiann gtlpgcaaqr nycetnwcqn ggtcvnkwnt yicecpvryg
     1561 gknceqamps pqrfsgesii iwsdlditis vpwyiglmfr trkvsgmlmq anagaaskin
     1621 iqilnnylqf evysglsqva slkmnqlrvs dgewhhllie lksakdgkdi kylavmsldy
     1681 gmyqstvqig nqlpglkmks iivggvsgdq isvqqgfygc mqgvrmgets tntatlnmkq
     1741 aikinvkdgc eidnpcdsnp cpqhsycsdd wdsyscicdp gyfgrdcvdv cnlnpcehvs
     1801 tcvhkpsssh gytcecgqsy ygqycesknd lpcprgwwgn picgpcncet skgfdsdcnk
     1861 tngecrckan yyrpqssdtc ypcdcfpsgs htracdmetg qcpckpgvig rqcnrcdnpf
     1921 aevtvrgcev iyngcpkafe agiwwpqtkf gqpaavpcpk gsvgnavrhc niergwlppe
     1981 lfncttntfv dlkimneklh hnetkldghk tirivrelqn atkytqslyg ndvrtayqmm
     2041 irvlqyesqq qgfdlaatrd vefnenivkv gsalldpsnk ehweqiqrte ggtahllrhy
     2101 eeyfnnvaqn mkktylrpfv ivatnmiiav dvfdksnftg ariprfheik edypkdless
     2161 vvfpdtlfrp sdrkavptmk psnqkssskv nsalspesvf akrkkrhpdd lthhtvamvv
     2221 iyrslghllp enydpdrrsl rlpnrpiint pvvstaihsd gelppnlvek pivveytmle
     2281 teertkpvcv fwnhsitsgg tgawssrgce lfsrnkshia cqcshltsfa vlmdiskren
     2341 gevlplkivt yttvsislva llitfillvl irtlrsnlhs ihknlvaalf fselvfligi
     2401 nqtenpfvct viaillhyfy mstfawmfve qlhiyrmlte vrninfghmr fyyvvgwgip
     2461 aiitglavgl dpqgygnpdf cwlsvhdtli wsfagpiiiv vvvntvifil amkascrqrq
     2521 rsfektgvvs vlrtafllll lisatwllgl mavnsdvmtf hylfaifscl qglfifffhc
     2581 vfnkevrkhl knaltgkkpl pddsnatrat lltrslncnn tyieepnmyr ttigestvsl
     2641 estvrsaksh nsylayilrd eaahklsgss sqaragqtea dssifhrnps ksnehdsdsd
     2701 selsldehss syasshssds eedglepekk wntstsknne hgplhstpkv dtlpnhvkpy
     2761 wptecitasd sedpsgnqkl kvetkvnvel hrenqvnhsn eapqdkeneg qqkenrplsh
     2821 qnnqqpeqrk gilknkvtyp pplvdknmkn rlreklsdyn qttissrats lgtndgvrsp
     2881 sdsgvtvkna rreqsrdqln gmamnlhvgt ghadtsdseg snetsi
//
LOCUS       XP_009554452             263 aa            linear   VRT 09-MAR-2023
DEFINITION  matrilysin [Cuculus canorus].
ACCESSION   XP_009554452
VERSION     XP_009554452.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556157.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554452.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..263
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..263
                     /product="matrilysin"
                     /calculated_mol_wt=29935
     Region          <54..77
                     /region_name="PG_binding_1"
                     /note="Putative peptidoglycan binding domain; pfam01471"
                     /db_xref="CDD:460223"
     Region          102..257
                     /region_name="Peptidase_M10"
                     /note="Matrixin; pfam00413"
                     /db_xref="CDD:425668"
     CDS             1..263
                     /gene="MMP7"
                     /coded_by="XM_009556157.2:67..858"
                     /db_xref="GeneID:104055073"
ORIGIN      
        1 mrylllcfav flpgslafpa rlnagsqnnp gfeivkayld kffpinpksr sltleerike
       61 mqkffhltit gkldaeteet ikkprcgvpd vadyqtfpgs pkwkkthlty rilnytpdlp
      121 qnkvddairr afmvwsnvtp lqfqriyqqe adieiafarr ehgdgypfdg rgntlahafp
      181 pgngiggdth fddderwsey nrevnlflva ahefghslgl ahsnvpealm ypvykyvnpa
      241 tfrlpdddkr giqklygkks sns
//
LOCUS       XP_053940105             284 aa            linear   VRT 09-MAR-2023
DEFINITION  post-GPI attachment to proteins factor 2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053940105
VERSION     XP_053940105.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084130.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..284
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..284
                     /product="post-GPI attachment to proteins factor 2 isoform
                     X1"
                     /calculated_mol_wt=32587
     Region          48..271
                     /region_name="Frag1"
                     /note="Frag1/DRAM/Sfk1 family; pfam10277"
                     /db_xref="CDD:431193"
     CDS             1..284
                     /gene="PGAP2"
                     /coded_by="XM_054084130.1:490..1344"
                     /db_xref="GeneID:104055925"
ORIGIN      
        1 mslakligae pngaessgsk rsrepprtik mlqvplpldr dgilfrlrft tlavgtvfcp
       61 lfgflfcviw sllfhfqett athcgvpnyl psisaaigge tpqryvwrlc iglhsaprfl
      121 vavaywnhyq schcshpryl rlchfnllln llenfallil tyvsssenya ihenafivfi
      181 tsalghmllt cilwrmtkkh tvspeerksy kwkqllffft fitfafavcv yfhhnwycgp
      241 gvytifafle ylvvlsnmaf hmtafwdfgn kelvvsslve dkhf
//
LOCUS       XP_053940113             280 aa            linear   VRT 09-MAR-2023
DEFINITION  post-GPI attachment to proteins factor 2 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053940113
VERSION     XP_053940113.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084138.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..280
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..280
                     /product="post-GPI attachment to proteins factor 2 isoform
                     X2"
                     /calculated_mol_wt=32175
     Region          48..267
                     /region_name="Frag1"
                     /note="Frag1/DRAM/Sfk1 family; pfam10277"
                     /db_xref="CDD:431193"
     CDS             1..280
                     /gene="PGAP2"
                     /coded_by="XM_054084138.1:312..1154"
                     /db_xref="GeneID:104055925"
ORIGIN      
        1 mslakligae pngaessgsk rsrepprtik mlqvplpldr dgilfrlrft tlavgtvfcp
       61 lfgflfcviw sllfhfqett athcgvpnyl psisaaigge tpqryvwrlc iglhsaprfl
      121 vavaywnhyq schcshpryl rlchfnllln llenfallil tyvsssenya ihenafivfi
      181 tsalghmllt cilwrmtkkh terksykwkq llffftfitf afavcvyfhh nwycgpgvyt
      241 ifafleylvv lsnmafhmta fwdfgnkelv vsslvedkhf
//
LOCUS       XP_053940123             254 aa            linear   VRT 09-MAR-2023
DEFINITION  post-GPI attachment to proteins factor 2 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053940123
VERSION     XP_053940123.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084148.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..254
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..254
                     /product="post-GPI attachment to proteins factor 2 isoform
                     X3"
                     /calculated_mol_wt=29437
     Region          18..241
                     /region_name="Frag1"
                     /note="Frag1/DRAM/Sfk1 family; pfam10277"
                     /db_xref="CDD:431193"
     CDS             1..254
                     /gene="PGAP2"
                     /coded_by="XM_054084148.1:169..933"
                     /db_xref="GeneID:104055925"
ORIGIN      
        1 mlqvplpldr dgilfrlrft tlavgtvfcp lfgflfcviw sllfhfqett athcgvpnyl
       61 psisaaigge tpqryvwrlc iglhsaprfl vavaywnhyq schcshpryl rlchfnllln
      121 llenfallil tyvsssenya ihenafivfi tsalghmllt cilwrmtkkh tvspeerksy
      181 kwkqllffft fitfafavcv yfhhnwycgp gvytifafle ylvvlsnmaf hmtafwdfgn
      241 kelvvsslve dkhf
//
LOCUS       XP_053940130             254 aa            linear   VRT 09-MAR-2023
DEFINITION  post-GPI attachment to proteins factor 2 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053940130
VERSION     XP_053940130.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084155.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..254
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..254
                     /product="post-GPI attachment to proteins factor 2 isoform
                     X3"
                     /calculated_mol_wt=29437
     Region          18..241
                     /region_name="Frag1"
                     /note="Frag1/DRAM/Sfk1 family; pfam10277"
                     /db_xref="CDD:431193"
     CDS             1..254
                     /gene="PGAP2"
                     /coded_by="XM_054084155.1:477..1241"
                     /db_xref="GeneID:104055925"
ORIGIN      
        1 mlqvplpldr dgilfrlrft tlavgtvfcp lfgflfcviw sllfhfqett athcgvpnyl
       61 psisaaigge tpqryvwrlc iglhsaprfl vavaywnhyq schcshpryl rlchfnllln
      121 llenfallil tyvsssenya ihenafivfi tsalghmllt cilwrmtkkh tvspeerksy
      181 kwkqllffft fitfafavcv yfhhnwycgp gvytifafle ylvvlsnmaf hmtafwdfgn
      241 kelvvsslve dkhf
//
LOCUS       XP_053940140             254 aa            linear   VRT 09-MAR-2023
DEFINITION  post-GPI attachment to proteins factor 2 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053940140
VERSION     XP_053940140.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084165.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..254
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..254
                     /product="post-GPI attachment to proteins factor 2 isoform
                     X3"
                     /calculated_mol_wt=29437
     Region          18..241
                     /region_name="Frag1"
                     /note="Frag1/DRAM/Sfk1 family; pfam10277"
                     /db_xref="CDD:431193"
     CDS             1..254
                     /gene="PGAP2"
                     /coded_by="XM_054084165.1:329..1093"
                     /db_xref="GeneID:104055925"
ORIGIN      
        1 mlqvplpldr dgilfrlrft tlavgtvfcp lfgflfcviw sllfhfqett athcgvpnyl
       61 psisaaigge tpqryvwrlc iglhsaprfl vavaywnhyq schcshpryl rlchfnllln
      121 llenfallil tyvsssenya ihenafivfi tsalghmllt cilwrmtkkh tvspeerksy
      181 kwkqllffft fitfafavcv yfhhnwycgp gvytifafle ylvvlsnmaf hmtafwdfgn
      241 kelvvsslve dkhf
//
LOCUS       XP_009558019             327 aa            linear   VRT 09-MAR-2023
DEFINITION  ALX homeobox protein 1 [Cuculus canorus].
ACCESSION   XP_009558019
VERSION     XP_009558019.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009559724.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..327
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..327
                     /product="ALX homeobox protein 1"
                     /calculated_mol_wt=37138
     Region          134..190
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     Region          303..321
                     /region_name="OAR"
                     /note="OAR motif; pfam03826"
                     /db_xref="CDD:461067"
     CDS             1..327
                     /gene="ALX1"
                     /coded_by="XM_009559724.2:214..1197"
                     /db_xref="GeneID:104058243"
ORIGIN      
        1 mimdflsekf alksqpskns dfymgaggtl ehvmetldne sfysktsgsk cvqafnplqr
       61 aehhvrlert spcqdnvnyg itkvegqplh telnrpmdnc snlrmspvkg mqekgeldel
      121 gdkcdsnvss skkrrhrttf tslqleelek vfqkthypdv yvreqlalrt eltearvqvw
      181 fqnrrakwrk rerygqiqqa kshfaatydi svlprtdsyp qiqnnlwagn aasgsvvtsc
      241 mlprdtsscm tpyshsprad sgytgfsnhq nqfshmplnn fftdsllsga tnghafetkp
      301 eferrsssia vlrmkakeha aniswam
//
LOCUS       XP_053940164             543 aa            linear   VRT 09-MAR-2023
DEFINITION  monocarboxylate transporter 3 [Cuculus canorus].
ACCESSION   XP_053940164
VERSION     XP_053940164.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084189.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..543
                     /product="monocarboxylate transporter 3"
                     /calculated_mol_wt=58101
     Region          1..481
                     /region_name="2A0113"
                     /note="monocarboxylate transporter 1; TIGR00892"
                     /db_xref="CDD:273325"
     CDS             1..543
                     /gene="SLC16A8"
                     /coded_by="XM_054084189.1:511..2142"
                     /db_xref="GeneID:104065880"
ORIGIN      
        1 mgradseegq lpapvkppdg gwgwivllgc fvitgfsyaf pkavsvyfke lmkdfhvgys
       61 dtawissiml amlygtgpvc simvnqfgcr pvmligglla sagmilasft tniielylta
      121 gvltglgmal nfqpslimlg tyfdkrrpla nglaaagspv flsclsplgq vllekfgwrg
      181 gflimgglll ncctcgavmr pldmgmkrkt ekaqdkyeak emlpiggksd egisttdknk
      241 kakkakkkpk kgkklldfsi fsnrgfiiyt iskfilvlgl fvppillvny akdtgvpdte
      301 aafllsiigf idifarpacg mvaglkwvrp hvaylfsfsm lfngltdics arasnytglv
      361 ifcvffgisy gmvgalqfev lmaivgsqkf ssaiglvlli eavavligpp sagrlvdalk
      421 nyevifylag sevvlsslfl amatycclkr gkkkepppek nlsagggsdt eeaesdvqea
      481 eehssdnhqp ahstdnamva aseeanhvae eqsgegggcp kgdgevlard gsnadhmver
      541 dsf
//
LOCUS       XP_009566709             543 aa            linear   VRT 09-MAR-2023
DEFINITION  monocarboxylate transporter 3 [Cuculus canorus].
ACCESSION   XP_009566709
VERSION     XP_009566709.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568414.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566709.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..543
                     /product="monocarboxylate transporter 3"
                     /calculated_mol_wt=58101
     Region          1..481
                     /region_name="2A0113"
                     /note="monocarboxylate transporter 1; TIGR00892"
                     /db_xref="CDD:273325"
     CDS             1..543
                     /gene="SLC16A8"
                     /coded_by="XM_009568414.2:588..2219"
                     /db_xref="GeneID:104065880"
ORIGIN      
        1 mgradseegq lpapvkppdg gwgwivllgc fvitgfsyaf pkavsvyfke lmkdfhvgys
       61 dtawissiml amlygtgpvc simvnqfgcr pvmligglla sagmilasft tniielylta
      121 gvltglgmal nfqpslimlg tyfdkrrpla nglaaagspv flsclsplgq vllekfgwrg
      181 gflimgglll ncctcgavmr pldmgmkrkt ekaqdkyeak emlpiggksd egisttdknk
      241 kakkakkkpk kgkklldfsi fsnrgfiiyt iskfilvlgl fvppillvny akdtgvpdte
      301 aafllsiigf idifarpacg mvaglkwvrp hvaylfsfsm lfngltdics arasnytglv
      361 ifcvffgisy gmvgalqfev lmaivgsqkf ssaiglvlli eavavligpp sagrlvdalk
      421 nyevifylag sevvlsslfl amatycclkr gkkkepppek nlsagggsdt eeaesdvqea
      481 eehssdnhqp ahstdnamva aseeanhvae eqsgegggcp kgdgevlard gsnadhmver
      541 dsf
//
LOCUS       XP_053940182             407 aa            linear   VRT 09-MAR-2023
DEFINITION  PRKCA-binding protein [Cuculus canorus].
ACCESSION   XP_053940182
VERSION     XP_053940182.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084207.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..407
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..407
                     /product="PRKCA-binding protein"
                     /calculated_mol_wt=45565
     Region          21..104
                     /region_name="PDZ_PICK1-like"
                     /note="PDZ domain of PICK1 (protein interacting with
                     C-kinase 1) and similar domains; cd06722"
                     /db_xref="CDD:467205"
     Site            order(32..38,50,53,83,87,90..91)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467205"
     Site            order(44..46,79,81,83)
                     /site_type="lipid-binding"
                     /note="lipid binding site [chemical binding]"
                     /db_xref="CDD:467205"
     Region          146..360
                     /region_name="BAR_PICK1"
                     /note="The Bin/Amphiphysin/Rvs (BAR) domain of Protein
                     Interacting with C Kinase 1; cd07659"
                     /db_xref="CDD:153343"
     Site            order(162..163,169,173,176,179..180,183,186..187,191,
                     193..194,197,200..201,206..207,209..210,213,217,326,
                     330..331,334..335,337..338,345..346,348..349)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:153343"
     Site            order(168,171,174..175,178..179,181..183,185..186,222,225,
                     229,232..233)
                     /site_type="active"
                     /note="putative Rac binding site [active]"
                     /db_xref="CDD:153343"
     CDS             1..407
                     /gene="PICK1"
                     /coded_by="XM_054084207.1:154..1377"
                     /db_xref="GeneID:104065879"
ORIGIN      
        1 mfadldydle edklgiptvp gtvtlkkdsq nligisiggg aqycpclyiv qvfdntpaal
       61 dgtvaagdei tgvngksvkg ktkvevakmi qrvkgevtih ynklqadpkq gksldivlkk
      121 vkhrlvenms sgtadalgls railcndglv krleelerta elykglteht ksllraffel
      181 sqthrafgdv fsvigvrepq paaseafvkf adahrniekf gihllktikp mltdlntyln
      241 kaipdtrlti kkyldvkfey lsyclkvkem ddeeyscial geplyrvstg nyeyrlilrc
      301 rqeartrfak mrkdvlekie lldqkhvqdi vfqlqrfvst mskyyddcya vlrdadvfpi
      361 evdlarttln ygqkdaytdg aeeeeggser egsgkedang eklidda
//
LOCUS       XP_053940192             407 aa            linear   VRT 09-MAR-2023
DEFINITION  PRKCA-binding protein [Cuculus canorus].
ACCESSION   XP_053940192
VERSION     XP_053940192.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084217.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..407
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..407
                     /product="PRKCA-binding protein"
                     /calculated_mol_wt=45565
     Region          21..104
                     /region_name="PDZ_PICK1-like"
                     /note="PDZ domain of PICK1 (protein interacting with
                     C-kinase 1) and similar domains; cd06722"
                     /db_xref="CDD:467205"
     Site            order(32..38,50,53,83,87,90..91)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467205"
     Site            order(44..46,79,81,83)
                     /site_type="lipid-binding"
                     /note="lipid binding site [chemical binding]"
                     /db_xref="CDD:467205"
     Region          146..360
                     /region_name="BAR_PICK1"
                     /note="The Bin/Amphiphysin/Rvs (BAR) domain of Protein
                     Interacting with C Kinase 1; cd07659"
                     /db_xref="CDD:153343"
     Site            order(162..163,169,173,176,179..180,183,186..187,191,
                     193..194,197,200..201,206..207,209..210,213,217,326,
                     330..331,334..335,337..338,345..346,348..349)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:153343"
     Site            order(168,171,174..175,178..179,181..183,185..186,222,225,
                     229,232..233)
                     /site_type="active"
                     /note="putative Rac binding site [active]"
                     /db_xref="CDD:153343"
     CDS             1..407
                     /gene="PICK1"
                     /coded_by="XM_054084217.1:74..1297"
                     /db_xref="GeneID:104065879"
ORIGIN      
        1 mfadldydle edklgiptvp gtvtlkkdsq nligisiggg aqycpclyiv qvfdntpaal
       61 dgtvaagdei tgvngksvkg ktkvevakmi qrvkgevtih ynklqadpkq gksldivlkk
      121 vkhrlvenms sgtadalgls railcndglv krleelerta elykglteht ksllraffel
      181 sqthrafgdv fsvigvrepq paaseafvkf adahrniekf gihllktikp mltdlntyln
      241 kaipdtrlti kkyldvkfey lsyclkvkem ddeeyscial geplyrvstg nyeyrlilrc
      301 rqeartrfak mrkdvlekie lldqkhvqdi vfqlqrfvst mskyyddcya vlrdadvfpi
      361 evdlarttln ygqkdaytdg aeeeeggser egsgkedang eklidda
//
LOCUS       XP_053940210             751 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053940210
VERSION     XP_053940210.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084235.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..751
                     /product="MAP7 domain-containing protein 2 isoform X1"
                     /calculated_mol_wt=84828
     Region          <25..>599
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          <26..143
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     Region          418..578
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..751
                     /gene="MAP7D2"
                     /coded_by="XM_054084235.1:16..2271"
                     /db_xref="GeneID:104063408"
ORIGIN      
        1 mckrrqskdc adcvndvidg flktderqrl akerreerek ylaareqqil ekerraklqy
       61 ekqmeerwrr leeqrqreeq kraaveekrr qklkeeeerl eammrrsler sqqleqkqkr
      121 wswggalaag sggrdgesen tpppvlglaa ntlppdpvts tapadsfnac dklsastmnl
      181 pkqmespisk rlssstaait hspdrahrmh lspmenfivs rlltptqssl arsrstlmls
      241 eqynnpvfhi cprvapaspl kspykpsptr stdrkkatsp stsdamkgaa aaeatqteki
      301 kkekrpatps sssgmgsplr rsdspaamsr rsaspatpkt vaktypqspk hakqypaspv
      361 khratsnlnq etpkkkadke kenvshqkss gartdeaaqv asekhvpsag ktessegkit
      421 agttdaeeas kilaekrrqa rlqkeqeeke rqereererl ereeqkrkae eerlrleeea
      481 rkkeeerkre eeaarkkaee earrraeeeq mlkekqekel qaklekqree aeikareaae
      541 qlrlereqim qqieqerler kkrideimkr trrsetpeik keepklevps slnvekqpkt
      601 lvlnqpeing latclknksl esaasvipsq dvvanglksv pgliqleavd gkpnnmedsa
      661 devqsmdvsp vskeelisip eyspmnelmp gvsldqngts nskaledlld ftgqatyskt
      721 ssdtislddc nknliegfns pgqentlnsi c
//
LOCUS       XP_053940220             749 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053940220
VERSION     XP_053940220.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084245.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..749
                     /product="MAP7 domain-containing protein 2 isoform X2"
                     /calculated_mol_wt=84408
     Region          <23..>597
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          <24..141
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     Region          416..576
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..749
                     /gene="MAP7D2"
                     /coded_by="XM_054084245.1:98..2347"
                     /db_xref="GeneID:104063408"
ORIGIN      
        1 maepgaarsh pratvidgfl ktderqrlak erreerekyl aareqqilek erraklqyek
       61 qmeerwrrle eqrqreeqkr aaveekrrqk lkeeeerlea mmrrslersq qleqkqkrws
      121 wggalaagsg grdgesentp ppvlglaant lppdpvtsta padsfnacdk lsastmnlpk
      181 qmespiskrl ssstaaiths pdrahrmhls pmenfivsrl ltptqsslar srstlmlseq
      241 ynnpvfhicp rvapasplks pykpsptrst drkkatspst sdamkgaaaa eatqtekikk
      301 ekrpatpsss sgmgsplrrs dspaamsrrs aspatpktva ktypqspkha kqypaspvkh
      361 ratsnlnqet pkkkadkeke nvshqkssga rtdeaaqvas ekhvpsagkt essegkitag
      421 ttdaeeaski laekrrqarl qkeqeekerq ereererler eeqkrkaeee rlrleeeark
      481 keeerkreee aarkkaeeea rrraeeeqml kekqekelqa klekqreeae ikareaaeql
      541 rlereqimqq ieqerlerkk rideimkrtr rsetpeikke epklevpssl nvekqpktlv
      601 lnqpeingla tclknksles aasvipsqdv vanglksvpg liqleavdgk pnnmedsade
      661 vqsmdvspvs keelisipey spmnelmpgv sldqngtsns kaledlldft gqatysktss
      721 dtislddcnk nliegfnspg qentlnsic
//
LOCUS       XP_053940230             749 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053940230
VERSION     XP_053940230.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084255.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..749
                     /product="MAP7 domain-containing protein 2 isoform X3"
                     /calculated_mol_wt=84672
     Region          <23..>597
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          <24..141
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     Region          416..576
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..749
                     /gene="MAP7D2"
                     /coded_by="XM_054084255.1:1..2250"
                     /db_xref="GeneID:104063408"
ORIGIN      
        1 mlfrhmsspl ldirvidgfl ktderqrlak erreerekyl aareqqilek erraklqyek
       61 qmeerwrrle eqrqreeqkr aaveekrrqk lkeeeerlea mmrrslersq qleqkqkrws
      121 wggalaagsg grdgesentp ppvlglaant lppdpvtsta padsfnacdk lsastmnlpk
      181 qmespiskrl ssstaaiths pdrahrmhls pmenfivsrl ltptqsslar srstlmlseq
      241 ynnpvfhicp rvapasplks pykpsptrst drkkatspst sdamkgaaaa eatqtekikk
      301 ekrpatpsss sgmgsplrrs dspaamsrrs aspatpktva ktypqspkha kqypaspvkh
      361 ratsnlnqet pkkkadkeke nvshqkssga rtdeaaqvas ekhvpsagkt essegkitag
      421 ttdaeeaski laekrrqarl qkeqeekerq ereererler eeqkrkaeee rlrleeeark
      481 keeerkreee aarkkaeeea rrraeeeqml kekqekelqa klekqreeae ikareaaeql
      541 rlereqimqq ieqerlerkk rideimkrtr rsetpeikke epklevpssl nvekqpktlv
      601 lnqpeingla tclknksles aasvipsqdv vanglksvpg liqleavdgk pnnmedsade
      661 vqsmdvspvs keelisipey spmnelmpgv sldqngtsns kaledlldft gqatysktss
      721 dtislddcnk nliegfnspg qentlnsic
//
LOCUS       XP_053940240             743 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053940240
VERSION     XP_053940240.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084265.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..743
                     /product="MAP7 domain-containing protein 2 isoform X4"
                     /calculated_mol_wt=83876
     Region          <25..>591
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          <26..143
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     Region          410..570
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..743
                     /gene="MAP7D2"
                     /coded_by="XM_054084265.1:16..2247"
                     /db_xref="GeneID:104063408"
ORIGIN      
        1 mckrrqskdc adcvndvidg flktderqrl akerreerek ylaareqqil ekerraklqy
       61 ekqmeerwrr leeqrqreeq kraaveekrr qklkeeeerl eammrrsler sqqleqkqkr
      121 wswggalaag sggrdgesen tpppvlglaa ntlppdpvts tapadsfnac dklsastmnl
      181 pkqmespisk rlssstaait hspdrahrmh lspmenfivs rlltptqssl arsrstlmls
      241 eqynnpapas plkspykpsp trstdrkkat spstsdamkg aaaaeatqte kikkekrpat
      301 pssssgmgsp lrrsdspaam srrsaspatp ktvaktypqs pkhakqypas pvkhratsnl
      361 nqetpkkkad kekenvshqk ssgartdeaa qvasekhvps agktessegk itagttdaee
      421 askilaekrr qarlqkeqee kerqereere rlereeqkrk aeeerlrlee earkkeeerk
      481 reeeaarkka eeearrraee eqmlkekqek elqaklekqr eeaeikarea aeqlrlereq
      541 imqqieqerl erkkrideim krtrrsetpe ikkeepklev psslnvekqp ktlvlnqpei
      601 nglatclknk slesaasvip sqdvvanglk svpgliqlea vdgkpnnmed sadevqsmdv
      661 spvskeelis ipeyspmnel mpgvsldqng tsnskaledl ldftgqatys ktssdtisld
      721 dcnknliegf nspgqentln sic
//
LOCUS       XP_053940248             737 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 2 isoform X5 [Cuculus canorus].
ACCESSION   XP_053940248
VERSION     XP_053940248.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084273.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..737
                     /product="MAP7 domain-containing protein 2 isoform X5"
                     /calculated_mol_wt=83276
     Region          <11..>585
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          <12..129
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     Region          404..564
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..737
                     /gene="MAP7D2"
                     /coded_by="XM_054084273.1:16..2229"
                     /db_xref="GeneID:104063408"
ORIGIN      
        1 mriidgflkt derqrlaker reerekylaa reqqileker raklqyekqm eerwrrleeq
       61 rqreeqkraa veekrrqklk eeeerleamm rrslersqql eqkqkrwswg galaagsggr
      121 dgesentppp vlglaantlp pdpvtstapa dsfnacdkls astmnlpkqm espiskrlss
      181 staaithspd rahrmhlspm enfivsrllt ptqsslarsr stlmlseqyn npvfhicprv
      241 apasplkspy kpsptrstdr kkatspstsd amkgaaaaea tqtekikkek rpatpssssg
      301 mgsplrrsds paamsrrsas patpktvakt ypqspkhakq ypaspvkhra tsnlnqetpk
      361 kkadkekenv shqkssgart deaaqvasek hvpsagktes segkitagtt daeeaskila
      421 ekrrqarlqk eqeekerqer eererleree qkrkaeeerl rleeearkke eerkreeeaa
      481 rkkaeeearr raeeeqmlke kqekelqakl ekqreeaeik areaaeqlrl ereqimqqie
      541 qerlerkkri deimkrtrrs etpeikkeep klevpsslnv ekqpktlvln qpeinglatc
      601 lknkslesaa svipsqdvva nglksvpgli qleavdgkpn nmedsadevq smdvspvske
      661 elisipeysp mnelmpgvsl dqngtsnska ledlldftgq atysktssdt islddcnknl
      721 iegfnspgqe ntlnsic
//
LOCUS       XP_053940256             718 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 2 isoform X6 [Cuculus canorus].
ACCESSION   XP_053940256
VERSION     XP_053940256.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084281.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..718
                     /product="MAP7 domain-containing protein 2 isoform X6"
                     /calculated_mol_wt=81569
     Region          <31..>566
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          385..545
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..718
                     /gene="MAP7D2"
                     /coded_by="XM_054084281.1:16..2172"
                     /db_xref="GeneID:104063408"
ORIGIN      
        1 mckrrqskdc adcvndvidg flktderqrl akerreerek ylaareqqil ekerraklqy
       61 ekqmeerwrr leeqrqreeq kraaveekrr qklkeeeerl eammrrsler sqqleqkqkr
      121 wswggalaag sggrdacdkl sastmnlpkq mespiskrls sstaaithsp drahrmhlsp
      181 menfivsrll tptqsslars rstlmlseqy nnpvfhicpr vapasplksp ykpsptrstd
      241 rkkatspsts damkgaaaae atqtekikke krpatpssss gmgsplrrsd spaamsrrsa
      301 spatpktvak typqspkhak qypaspvkhr atsnlnqetp kkkadkeken vshqkssgar
      361 tdeaaqvase khvpsagkte ssegkitagt tdaeeaskil aekrrqarlq keqeekerqe
      421 reererlere eqkrkaeeer lrleeearkk eeerkreeea arkkaeeear rraeeeqmlk
      481 ekqekelqak lekqreeaei kareaaeqlr lereqimqqi eqerlerkkr ideimkrtrr
      541 setpeikkee pklevpssln vekqpktlvl nqpeinglat clknkslesa asvipsqdvv
      601 anglksvpgl iqleavdgkp nnmedsadev qsmdvspvsk eelisipeys pmnelmpgvs
      661 ldqngtsnsk aledlldftg qatysktssd tislddcnkn liegfnspgq entlnsic
//
LOCUS       XP_053940264             710 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 2 isoform X7 [Cuculus canorus].
ACCESSION   XP_053940264
VERSION     XP_053940264.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084289.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..710
                     /product="MAP7 domain-containing protein 2 isoform X7"
                     /calculated_mol_wt=80131
     Region          <26..143
                     /region_name="DUF5401"
                     /note="Family of unknown function (DUF5401); pfam17380"
                     /db_xref="CDD:375164"
     Region          377..537
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..710
                     /gene="MAP7D2"
                     /coded_by="XM_054084289.1:16..2148"
                     /db_xref="GeneID:104063408"
ORIGIN      
        1 mckrrqskdc adcvndvidg flktderqrl akerreerek ylaareqqil ekerraklqy
       61 ekqmeerwrr leeqrqreeq kraaveekrr qklkeeeerl eammrrsler sqqleqkqkr
      121 wswggalaag sggrdgesen tpppvlglaa ntlppdpvts tapadsfnac dklsastmnl
      181 pkqmespisk rlssstaait hspdrvfhic prvapasplk spykpsptrs tdrkkatsps
      241 tsdamkgaaa aeatqtekik kekrpatpss ssgmgsplrr sdspaamsrr saspatpktv
      301 aktypqspkh akqypaspvk hratsnlnqe tpkkkadkek envshqkssg artdeaaqva
      361 sekhvpsagk tessegkita gttdaeeask ilaekrrqar lqkeqeeker qereererle
      421 reeqkrkaee erlrleeear kkeeerkree eaarkkaeee arrraeeeqm lkekqekelq
      481 aklekqreea eikareaaeq lrlereqimq qieqerlerk krideimkrt rrsetpeikk
      541 eepklevpss lnvekqpktl vlnqpeingl atclknksle saasvipsqd vvanglksvp
      601 gliqleavdg kpnnmedsad evqsmdvspv skeelisipe yspmnelmpg vsldqngtsn
      661 skaledlldf tgqatyskts sdtislddcn knliegfnsp gqentlnsic
//
LOCUS       XP_053940271             702 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 2 isoform X8 [Cuculus canorus].
ACCESSION   XP_053940271
VERSION     XP_053940271.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084296.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..702
                     /product="MAP7 domain-containing protein 2 isoform X8"
                     /calculated_mol_wt=79179
     Region          <31..>550
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          369..529
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..702
                     /gene="MAP7D2"
                     /coded_by="XM_054084296.1:16..2124"
                     /db_xref="GeneID:104063408"
ORIGIN      
        1 mckrrqskdc adcvndvidg flktderqrl akerreerek ylaareqqil ekerraklqy
       61 ekqmeerwrr leeqrqreeq kraaveekrr qklkeeeerl eammrrsler sqqleqkqkr
      121 wswggalaag sggrdgesen tpppvlglaa ntlppdpvts tapadsfnac dklsastmnl
      181 pkqmespisk rlssstaait hspdrapasp lkspykpspt rstdrkkats pstsdamkga
      241 aaaeatqtek ikkekrpatp ssssgmgspl rrsdspaams rrsaspatpk tvaktypqsp
      301 khakqypasp vkhratsnln qetpkkkadk ekenvshqks sgartdeaaq vasekhvpsa
      361 gktessegki tagttdaeea skilaekrrq arlqkeqeek erqereerer lereeqkrka
      421 eeerlrleee arkkeeerkr eeeaarkkae eearrraeee qmlkekqeke lqaklekqre
      481 eaeikareaa eqlrlereqi mqqieqerle rkkrideimk rtrrsetpei kkeepklevp
      541 sslnvekqpk tlvlnqpein glatclknks lesaasvips qdvvanglks vpgliqleav
      601 dgkpnnmeds adevqsmdvs pvskeelisi peyspmnelm pgvsldqngt snskaledll
      661 dftgqatysk tssdtisldd cnknliegfn spgqentlns ic
//
LOCUS       XP_053940278             677 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 2 isoform X9 [Cuculus canorus].
ACCESSION   XP_053940278
VERSION     XP_053940278.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084303.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..677
                     /product="MAP7 domain-containing protein 2 isoform X9"
                     /calculated_mol_wt=76872
     Region          <31..>513
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          344..504
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..677
                     /gene="MAP7D2"
                     /coded_by="XM_054084303.1:16..2049"
                     /db_xref="GeneID:104063408"
ORIGIN      
        1 mckrrqskdc adcvndvidg flktderqrl akerreerek ylaareqqil ekerraklqy
       61 ekqmeerwrr leeqrqreeq kraaveekrr qklkeeeerl eammrrsler sqqleqkqkr
      121 wswggalaag sggrdacdkl sastmnlpkq mespiskrls sstaaithsp drvfhicprv
      181 apasplkspy kpsptrstdr kkatspstsd amkgaaaaea tqtekikkek rpatpssssg
      241 mgsplrrsds paamsrrsas patpktvakt ypqspkhakq ypaspvkhra tsnlnqetpk
      301 kkadkekenv shqkssgart deaaqvasek hvpsagktes segkitagtt daeeaskila
      361 ekrrqarlqk eqeekerqer eererleree qkrkaeeerl rleeearkke eerkreeeaa
      421 rkkaeeearr raeeeqmlke kqekelqakl ekqreeaeik areaaeqlrl ereqimqqie
      481 qerlerkkri deimkrtrrs etpeikkeep klevpsslnv ekqpktlvln qpeinglatc
      541 lknkslesaa svipsqdvva nglksvpgli qleavdgkpn nmedsadevq smdvspvske
      601 elisipeysp mnelmpgvsl dqngtsnska ledlldftgq atysktssdt islddcnknl
      661 iegfnspgqe ntlnsic
//
LOCUS       XP_053940284             669 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 2 isoform X10 [Cuculus canorus].
ACCESSION   XP_053940284
VERSION     XP_053940284.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084309.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..669
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..669
                     /product="MAP7 domain-containing protein 2 isoform X10"
                     /calculated_mol_wt=75919
     Region          <25..>505
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          336..496
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..669
                     /gene="MAP7D2"
                     /coded_by="XM_054084309.1:16..2025"
                     /db_xref="GeneID:104063408"
ORIGIN      
        1 mckrrqskdc adcvndvidg flktderqrl akerreerek ylaareqqil ekerraklqy
       61 ekqmeerwrr leeqrqreeq kraaveekrr qklkeeeerl eammrrsler sqqleqkqkr
      121 wswggalaag sggrdacdkl sastmnlpkq mespiskrls sstaaithsp drapasplks
      181 pykpsptrst drkkatspst sdamkgaaaa eatqtekikk ekrpatpsss sgmgsplrrs
      241 dspaamsrrs aspatpktva ktypqspkha kqypaspvkh ratsnlnqet pkkkadkeke
      301 nvshqkssga rtdeaaqvas ekhvpsagkt essegkitag ttdaeeaski laekrrqarl
      361 qkeqeekerq ereererler eeqkrkaeee rlrleeeark keeerkreee aarkkaeeea
      421 rrraeeeqml kekqekelqa klekqreeae ikareaaeql rlereqimqq ieqerlerkk
      481 rideimkrtr rsetpeikke epklevpssl nvekqpktlv lnqpeingla tclknksles
      541 aasvipsqdv vanglksvpg liqleavdgk pnnmedsade vqsmdvspvs keelisipey
      601 spmnelmpgv sldqngtsns kaledlldft gqatysktss dtislddcnk nliegfnspg
      661 qentlnsic
//
LOCUS       XP_053940290             649 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 2 isoform X11 [Cuculus canorus].
ACCESSION   XP_053940290
VERSION     XP_053940290.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084315.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..649
                     /product="MAP7 domain-containing protein 2 isoform X11"
                     /calculated_mol_wt=72037
     Region          <172..>497
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          316..476
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..649
                     /gene="MAP7D2"
                     /coded_by="XM_054084315.1:368..2317"
                     /db_xref="GeneID:104063408"
ORIGIN      
        1 mmrrslersq qleqkqkrws wggalaagsg grdgesentp ppvlglaant lppdpvtsta
       61 padsfnacdk lsastmnlpk qmespiskrl ssstaaiths pdrahrmhls pmenfivsrl
      121 ltptqsslar srstlmlseq ynnpvfhicp rvapasplks pykpsptrst drkkatspst
      181 sdamkgaaaa eatqtekikk ekrpatpsss sgmgsplrrs dspaamsrrs aspatpktva
      241 ktypqspkha kqypaspvkh ratsnlnqet pkkkadkeke nvshqkssga rtdeaaqvas
      301 ekhvpsagkt essegkitag ttdaeeaski laekrrqarl qkeqeekerq ereererler
      361 eeqkrkaeee rlrleeeark keeerkreee aarkkaeeea rrraeeeqml kekqekelqa
      421 klekqreeae ikareaaeql rlereqimqq ieqerlerkk rideimkrtr rsetpeikke
      481 epklevpssl nvekqpktlv lnqpeingla tclknksles aasvipsqdv vanglksvpg
      541 liqleavdgk pnnmedsade vqsmdvspvs keelisipey spmnelmpgv sldqngtsns
      601 kaledlldft gqatysktss dtislddcnk nliegfnspg qentlnsic
//
LOCUS       XP_053940298             640 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 2 isoform X12 [Cuculus canorus].
ACCESSION   XP_053940298
VERSION     XP_053940298.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084323.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..640
                     /product="MAP7 domain-containing protein 2 isoform X12"
                     /calculated_mol_wt=72929
     Region          <25..>474
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          307..467
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..640
                     /gene="MAP7D2"
                     /coded_by="XM_054084323.1:16..1938"
                     /db_xref="GeneID:104063408"
ORIGIN      
        1 mckrrqskdc adcvndvidg flktderqrl akerreerek ylaareqqil ekerraklqy
       61 ekqmeerwrr leeqrqreeq kraaveekrr qklkeeeerl eammrrsler sqqleqkqkr
      121 wswggalaag sggrdvfhic prvapasplk spykpsptrs tdrkkatsps tsdamkgaaa
      181 aeatqtekik kekrpatpss ssgmgsplrr sdspaamsrr saspatpktv aktypqspkh
      241 akqypaspvk hratsnlnqe tpkkkadkek envshqkssg artdeaaqva sekhvpsagk
      301 tessegkita gttdaeeask ilaekrrqar lqkeqeeker qereererle reeqkrkaee
      361 erlrleeear kkeeerkree eaarkkaeee arrraeeeqm lkekqekelq aklekqreea
      421 eikareaaeq lrlereqimq qieqerlerk krideimkrt rrsetpeikk eepklevpss
      481 lnvekqpktl vlnqpeingl atclknksle saasvipsqd vvanglksvp gliqleavdg
      541 kpnnmedsad evqsmdvspv skeelisipe yspmnelmpg vsldqngtsn skaledlldf
      601 tgqatyskts sdtislddcn knliegfnsp gqentlnsic
//
LOCUS       XP_053940305             632 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 2 isoform X13 [Cuculus canorus].
ACCESSION   XP_053940305
VERSION     XP_053940305.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084330.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..632
                     /product="MAP7 domain-containing protein 2 isoform X13"
                     /calculated_mol_wt=71977
     Region          <25..>466
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          299..459
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..632
                     /gene="MAP7D2"
                     /coded_by="XM_054084330.1:16..1914"
                     /db_xref="GeneID:104063408"
ORIGIN      
        1 mckrrqskdc adcvndvidg flktderqrl akerreerek ylaareqqil ekerraklqy
       61 ekqmeerwrr leeqrqreeq kraaveekrr qklkeeeerl eammrrsler sqqleqkqkr
      121 wswggalaag sggrdapasp lkspykpspt rstdrkkats pstsdamkga aaaeatqtek
      181 ikkekrpatp ssssgmgspl rrsdspaams rrsaspatpk tvaktypqsp khakqypasp
      241 vkhratsnln qetpkkkadk ekenvshqks sgartdeaaq vasekhvpsa gktessegki
      301 tagttdaeea skilaekrrq arlqkeqeek erqereerer lereeqkrka eeerlrleee
      361 arkkeeerkr eeeaarkkae eearrraeee qmlkekqeke lqaklekqre eaeikareaa
      421 eqlrlereqi mqqieqerle rkkrideimk rtrrsetpei kkeepklevp sslnvekqpk
      481 tlvlnqpein glatclknks lesaasvips qdvvanglks vpgliqleav dgkpnnmeds
      541 adevqsmdvs pvskeelisi peyspmnelm pgvsldqngt snskaledll dftgqatysk
      601 tssdtisldd cnknliegfn spgqentlns ic
//
LOCUS       XP_053940313             616 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 2 isoform X14 [Cuculus canorus].
ACCESSION   XP_053940313
VERSION     XP_053940313.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084338.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..616
                     /product="MAP7 domain-containing protein 2 isoform X14"
                     /calculated_mol_wt=68777
     Region          <139..>464
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          283..443
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..616
                     /gene="MAP7D2"
                     /coded_by="XM_054084338.1:367..2217"
                     /db_xref="GeneID:104063408"
ORIGIN      
        1 mmrrslersq qleqkqkrws wggalaagsg grdacdklsa stmnlpkqme spiskrlsss
       61 taaithspdr ahrmhlspme nfivsrlltp tqsslarsrs tlmlseqynn pvfhicprva
      121 pasplkspyk psptrstdrk katspstsda mkgaaaaeat qtekikkekr patpssssgm
      181 gsplrrsdsp aamsrrsasp atpktvakty pqspkhakqy paspvkhrat snlnqetpkk
      241 kadkekenvs hqkssgartd eaaqvasekh vpsagktess egkitagttd aeeaskilae
      301 krrqarlqke qeekerqere ererlereeq krkaeeerlr leeearkkee erkreeeaar
      361 kkaeeearrr aeeeqmlkek qekelqakle kqreeaeika reaaeqlrle reqimqqieq
      421 erlerkkrid eimkrtrrse tpeikkeepk levpsslnve kqpktlvlnq peinglatcl
      481 knkslesaas vipsqdvvan glksvpgliq leavdgkpnn medsadevqs mdvspvskee
      541 lisipeyspm nelmpgvsld qngtsnskal edlldftgqa tysktssdti slddcnknli
      601 egfnspgqen tlnsic
//
LOCUS       XP_009567221             444 aa            linear   VRT 09-MAR-2023
DEFINITION  trans-acting T-cell-specific transcription factor GATA-3 isoform X1
            [Cuculus canorus].
ACCESSION   XP_009567221
VERSION     XP_009567221.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568926.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567221.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..444
                     /product="trans-acting T-cell-specific transcription
                     factor GATA-3 isoform X1"
                     /calculated_mol_wt=48036
     Region          263..313
                     /region_name="ZnF_GATA"
                     /note="Zinc finger DNA binding domain; binds specifically
                     to DNA consensus sequence [AT]GATA[AG] promoter elements;
                     a subset of family members may also bind protein;
                     zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C;
                     cd00202"
                     /db_xref="CDD:238123"
     Site            order(264,267,285,288)
                     /site_type="other"
                     /note="zinc binding site [ion binding]"
                     /db_xref="CDD:238123"
     Site            order(273..274,276,285..295,312)
                     /site_type="DNA binding"
                     /note="DNA-binding region [nucleotide binding]"
                     /db_xref="CDD:238123"
     Region          317..367
                     /region_name="ZnF_GATA"
                     /note="Zinc finger DNA binding domain; binds specifically
                     to DNA consensus sequence [AT]GATA[AG] promoter elements;
                     a subset of family members may also bind protein;
                     zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C;
                     cd00202"
                     /db_xref="CDD:238123"
     Site            order(318,321,339,342)
                     /site_type="other"
                     /note="zinc binding site [ion binding]"
                     /db_xref="CDD:238123"
     Site            order(327..328,330,339..349,365,367)
                     /site_type="DNA binding"
                     /note="DNA-binding region [nucleotide binding]"
                     /db_xref="CDD:238123"
     CDS             1..444
                     /gene="GATA3"
                     /coded_by="XM_009568926.2:195..1529"
                     /db_xref="GeneID:104066339"
ORIGIN      
        1 mevstdqprw vshhhpavln gqhpdshhpt lghtymdptq yplaeevdvl fnidgqgnpv
       61 ppyygnsvra tvqryptahh gsqvcrppll hgslpwldgs kalsshhsas pwnlspfskt
      121 sihhsspgpl svyppassst lsaghssphl ftfpptppkd vspdpsistp gstgstrqde
      181 kecikyqvsl adtmklessh srssmaslgg atssahhpit typpyvpeyg sglfppssll
      241 ggsptgfgck srpkarsste grecvncgat stplwrrdgt ghylcnacgl yhkmngqnrp
      301 likpkrrlsa arragtscan cqtttttlwr rnangdpvcn acglyyklhn inrpltmkke
      361 giqtrnrkms skskkckkvh dnledfpkss sfnpaalsrh mssishispf shsshmlttp
      421 tpmhppssls fgphhpssmv tamg
//
LOCUS       XP_053940331             443 aa            linear   VRT 09-MAR-2023
DEFINITION  trans-acting T-cell-specific transcription factor GATA-3 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053940331
VERSION     XP_053940331.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084356.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..443
                     /product="trans-acting T-cell-specific transcription
                     factor GATA-3 isoform X2"
                     /calculated_mol_wt=47907
     Region          262..312
                     /region_name="ZnF_GATA"
                     /note="Zinc finger DNA binding domain; binds specifically
                     to DNA consensus sequence [AT]GATA[AG] promoter elements;
                     a subset of family members may also bind protein;
                     zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C;
                     cd00202"
                     /db_xref="CDD:238123"
     Site            order(263,266,284,287)
                     /site_type="other"
                     /note="zinc binding site [ion binding]"
                     /db_xref="CDD:238123"
     Site            order(272..273,275,284..294,311)
                     /site_type="DNA binding"
                     /note="DNA-binding region [nucleotide binding]"
                     /db_xref="CDD:238123"
     Region          316..366
                     /region_name="ZnF_GATA"
                     /note="Zinc finger DNA binding domain; binds specifically
                     to DNA consensus sequence [AT]GATA[AG] promoter elements;
                     a subset of family members may also bind protein;
                     zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C;
                     cd00202"
                     /db_xref="CDD:238123"
     Site            order(317,320,338,341)
                     /site_type="other"
                     /note="zinc binding site [ion binding]"
                     /db_xref="CDD:238123"
     Site            order(326..327,329,338..348,364,366)
                     /site_type="DNA binding"
                     /note="DNA-binding region [nucleotide binding]"
                     /db_xref="CDD:238123"
     CDS             1..443
                     /gene="GATA3"
                     /coded_by="XM_054084356.1:195..1526"
                     /db_xref="GeneID:104066339"
ORIGIN      
        1 mevstdqprw vshhhpavln gqhpdshhpt lghtymdptq yplaeevdvl fnidgqgnpv
       61 ppyygnsvra tvqryptahh gsqvcrppll hgslpwldgs kalsshhsas pwnlspfskt
      121 sihhsspgpl svyppassst lsaghssphl ftfpptppkd vspdpsistp gstgstrqde
      181 kecikyqvsl adtmklessh srssmaslgg atssahhpit typpyvpeyg sglfppssll
      241 ggsptgfgck srpkarsstg recvncgats tplwrrdgtg hylcnacgly hkmngqnrpl
      301 ikpkrrlsaa rragtscanc qtttttlwrr nangdpvcna cglyyklhni nrpltmkkeg
      361 iqtrnrkmss kskkckkvhd nledfpksss fnpaalsrhm ssishispfs hsshmlttpt
      421 pmhppsslsf gphhpssmvt amg
//
LOCUS       XP_053940383             333 aa            linear   VRT 09-MAR-2023
DEFINITION  L-lactate dehydrogenase B chain [Cuculus canorus].
ACCESSION   XP_053940383
VERSION     XP_053940383.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084408.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..333
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..333
                     /product="L-lactate dehydrogenase B chain"
                     /calculated_mol_wt=36209
     Region          19..329
                     /region_name="LDH_1"
                     /note="A subgroup of L-lactate dehydrogenases; cd05293"
                     /db_xref="CDD:133429"
     Site            order(20,181,184,186,203,208,265..267,270,297..298,301,
                     303..305)
                     /site_type="other"
                     /note="tetramer (dimer of dimers) interface [polypeptide
                     binding]"
                     /db_xref="CDD:133429"
     Site            order(29..31,52,54,57,95..99,136,138,161,165,193,248,252)
                     /site_type="other"
                     /note="NAD binding site [chemical binding]"
                     /db_xref="CDD:133429"
     Site            order(33,38,60..61,64,66..67,169,171..172,178,244..245,
                     248..251)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:133429"
     Site            order(100,106,138,169,193,238,248)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:133429"
     CDS             1..333
                     /gene="LDHB"
                     /coded_by="XM_054084408.1:161..1162"
                     /db_xref="GeneID:104067078"
ORIGIN      
        1 matlkeklit pvaeaatvpn nkitvvgvgq vgmacaisil gkglcdelal vdvledklkg
       61 emmdlqhgsl flhthkivad kdyavtansk ivvvtagvrq qegesrlnlv qrnvnvfkfi
      121 ipqvvkyspn ctilvvsnpv diltyvtwkl sglpkhrvig sgcnldtarf rylmaerlgi
      181 hptschgwil gehgdssvav wsgvnvagvs lqelnpamgt dkdpenwkev hkqvvesaye
      241 viklkgytnw aiglsvaelc etmlknlcrv hsvstlvkgk ygiendvfls lpavlsasgl
      301 tsvinqklkd devaqlkksa dtlwniqkdl kdl
//
LOCUS       XP_053940396             767 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription regulator protein BACH1 [Cuculus canorus].
ACCESSION   XP_053940396
VERSION     XP_053940396.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084421.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..767
                     /product="transcription regulator protein BACH1"
                     /calculated_mol_wt=85370
     Region          9..128
                     /region_name="BTB_POZ_BACH1"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in BTB and CNC
                     homolog 1 (BACH1); cd18277"
                     /db_xref="CDD:349586"
     Site            order(9..15,18..23,25..26,29,35,50,52,55..57,65,92..93,
                     96..102,119..121,124,127..128)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:349586"
     Region          573..643
                     /region_name="bZIP_BACH"
                     /note="Basic leucine zipper (bZIP) domain of BTB and CNC
                     homolog (BACH) proteins: a DNA-binding and dimerization
                     domain; cd14719"
                     /db_xref="CDD:269867"
     Region          577..639
                     /region_name="coiled coil"
                     /note="coiled coil [structural motif]"
                     /db_xref="CDD:269867"
     Site            order(585..586,588..590,592..597,599..601)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:269867"
     Site            order(600,603..604,607..608,610..611,614..615,617..618,
                     621..622,624..625,628..629,631..632)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:269867"
     CDS             1..767
                     /gene="BACH1"
                     /coded_by="XM_054084421.1:230..2533"
                     /db_xref="GeneID:104064771"
ORIGIN      
        1 mslseknsvv fayessvhst nvllslddqr kqdilcdvti lvedqrfrah kavlaacssy
       61 flsrvvgqvd adliitlpee vtlkgfspll qfaytaklil nkdnvsevck caeflgvhni
      121 eescfqflkf kfldfksdqq ecsrkkcctq hcrktnpqig nvddgdveld deaeelleke
      181 yiqtpdtklc kgeenaklsp alqdnanqtc dpahlergsi sglssqcpky rkfqkafgnd
      241 kvhtaesnss ikdiqvppia vflekeipdn dgvqkaqecv pmqlvskcee tlvkmeevee
      301 giekkeepkr dsatrnvscp vekmdlapfp qnsavphgln svsflntceq ygnlnfssmq
      361 sttglaektv sgtgvgndki esqdntpskv dlctreatsi tsagdrssve revaehlaqg
      421 fwsdiystea cqihlppavs kesmepvysg kktecpwlgi risespdepc sqrtfttlns
      481 vncpfisnls tegcsnssei ssgdyvqgqq qeqcpynyvi slgeesetdt egdsescsar
      541 eqecevklpf naqriislsr ndfqsflkmh kltpeqldci hdirrrsknr iaaqrcrkrk
      601 ldciqnlese ieklqneken llkernhils tlgetkqnlt glcqqvckea alsheqiqil
      661 akysssdcpl aflflerert apsdselvtp asveladgls gvtptneqsa cyqrvksvcd
      721 atynqvqelh pvsvrtlekt shveqcgqts gitdfcqqmt dkcttde
//
LOCUS       XP_053940404             588 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-18 receptor accessory protein [Cuculus canorus].
ACCESSION   XP_053940404
VERSION     XP_053940404.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084429.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..588
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..588
                     /product="interleukin-18 receptor accessory protein"
                     /calculated_mol_wt=67727
     Region          54..160
                     /region_name="Ig_6"
                     /note="Immunoglobulin domain; pfam18452"
                     /db_xref="CDD:465773"
     Region          159..245
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          166..170
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          183..187
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          207..211
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          221..226
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          238..241
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          254..357
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          273..277
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          290..293
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          323..327
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          338..343
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          350..353
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          415..562
                     /region_name="TIR"
                     /note="TIR domain; pfam01582"
                     /db_xref="CDD:396246"
     CDS             1..588
                     /gene="IL18RAP"
                     /coded_by="XM_054084429.1:110..1876"
                     /db_xref="GeneID:104056638"
ORIGIN      
        1 mipkqniten kpklikkimf ilcwilvlfv sqveviennv pgcshvepqi wyraisdeef
       61 vlqcalpdrd athiynsllk qhrvkwfwhq kdkeplraik qssnpilqgd alwfkpvtdn
      121 asgvyicvir ekipclkiil dvqtkkeakc lsydanmlyl lagngnsisc pgtkcyshtn
      181 kadvkwykdg yqiksrksrq slklkhneiy lnptydedag iymcdytlyd nttkwivrra
      241 vtvevfaknt ihppnflypn gavileaelg kplqlecrvq fgferlslmr vtwkrnnken
      301 itellnqetr vypkglkght llhivklkkv terdlrsnft cfaensvgna tavirlktkq
      361 kvfllyilct aisalfaffl ctafiyhhwi eivlmyrsyl vhnettgdgk efdafvsyak
      421 ldfsesdstl iseekfalel lpdmlenkyg yklcilerdi lpggaytdev vtaikqsrra
      481 iiilspayvs gpsifelqaa vncaledkti klvlikfqtf qepetlppvv kkalrilpvv
      541 twkssisatp nkkfwkymhy hmpvkttkml gncslkgffq rlfslvyr
//
LOCUS       XP_053940417             444 aa            linear   VRT 09-MAR-2023
DEFINITION  endoplasmic reticulum membrane adapter protein XK isoform X1
            [Cuculus canorus].
ACCESSION   XP_053940417
VERSION     XP_053940417.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084442.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..444
                     /product="endoplasmic reticulum membrane adapter protein
                     XK isoform X1"
                     /calculated_mol_wt=50644
     Region          6..375
                     /region_name="XK-related"
                     /note="XK-related protein; pfam09815"
                     /db_xref="CDD:462912"
     CDS             1..444
                     /gene="XK"
                     /coded_by="XM_054084442.1:52..1386"
                     /db_xref="GeneID:104057406"
ORIGIN      
        1 mkfpgsvlvs lllfvaetvt alclsgayra agdrmwqwlt llfallpcal vqlslvfihr
       61 dvsrdrplvl llhllqlgpl vrcvevfyiy fragrveepy vsitkkrqmp kdgyseeiek
      121 evgqaegklc thrsafsras viqaflgsap qltlqlyicv lqqeitaars ifmvlsllsi
      181 vygalrcnil aikikyddyd vsvkpaaylc ifmwrsfeia trvtvlvlfs svlqiwtlpv
      241 vlvnffgfff ypwilfwqsk spfpenieka lsrvgttivl clltflyagi nmfcwsavqv
      301 klndpdlink sqnwyrltvy ymlrfienaf lllmwyiykt diylyvcapl lvlqlligyc
      361 mavlfmlvfy qfchpckklf sssiseglls cfkflcfick ppkltvltnk aevkspentd
      421 eawsssktid sqkgnphqsv ssna
//
LOCUS       XP_053940425             409 aa            linear   VRT 09-MAR-2023
DEFINITION  endoplasmic reticulum membrane adapter protein XK isoform X2
            [Cuculus canorus].
ACCESSION   XP_053940425
VERSION     XP_053940425.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084450.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..409
                     /product="endoplasmic reticulum membrane adapter protein
                     XK isoform X2"
                     /calculated_mol_wt=46614
     Region          <46..340
                     /region_name="XK-related"
                     /note="XK-related protein; pfam09815"
                     /db_xref="CDD:462912"
     CDS             1..409
                     /gene="XK"
                     /coded_by="XM_054084450.1:534..1763"
                     /db_xref="GeneID:104057406"
ORIGIN      
        1 mlfcnylvtg kkkkdlsgka sepaendqvp aprevavied spcagyrcve vfyiyfragr
       61 veepyvsitk krqmpkdgys eeiekevgqa egklcthrsa fsrasviqaf lgsapqltlq
      121 lyicvlqqei taarsifmvl sllsivygal rcnilaikik yddydvsvkp aaylcifmwr
      181 sfeiatrvtv lvlfssvlqi wtlpvvlvnf fgfffypwil fwqskspfpe niekalsrvg
      241 ttivlclltf lyaginmfcw savqvklndp dlinksqnwy rltvyymlrf ienaflllmw
      301 yiyktdiyly vcapllvlql ligycmavlf mlvfyqfchp ckklfsssis egllscfkfl
      361 cfickppklt vltnkaevks pentdeawss sktidsqkgn phqsvssna
//
LOCUS       XP_053940437             412 aa            linear   VRT 09-MAR-2023
DEFINITION  lanC-like protein 3 [Cuculus canorus].
ACCESSION   XP_053940437
VERSION     XP_053940437.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084462.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..412
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..412
                     /product="lanC-like protein 3"
                     /calculated_mol_wt=45368
     Region          55..406
                     /region_name="euk_LANCL"
                     /note="Eukaryotic Lanthionine synthetase C-like protein;
                     cd04794"
                     /db_xref="CDD:271202"
     CDS             1..412
                     /gene="LANCL3"
                     /coded_by="XM_054084462.1:52..1290"
                     /db_xref="GeneID:104057229"
ORIGIN      
        1 mgsqrcfanr fddypgspaa apdkeatvpl vtatierilr elpplggprg cqgglyggva
       61 gvaymlyhvs qcplfapsrd aylraarrvv daclryqeeg ggeadadtra afllggagvy
      121 avaalvyras gmpdfarplg kfrelsevca plsflecgsd elfvgragyl caalvlkqrl
      181 gmevltpaqi ksiclailes gkqyavkkrk pfplmysyyg teylgaahgl ssilqmllsy
      241 yeylqpadqe lvwqsvdflm dqeqnsnwpp elgetieren elvhwchgap giaylfakay
      301 lvskkpqyld tcircgeltw qkgllkkgpg ichgvagsay vflllyrltg nskyiyraqr
      361 faeflfteef kagsralesv yslyegfsgt vcfltdllqp nqaefplfsv fv
//
LOCUS       XP_053940449            1280 aa            linear   VRT 09-MAR-2023
DEFINITION  CST complex subunit CTC1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053940449
VERSION     XP_053940449.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084474.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1280
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1280
                     /product="CST complex subunit CTC1 isoform X1"
                     /calculated_mol_wt=142482
     Region          52..1257
                     /region_name="CTC1"
                     /note="CST, telomere maintenance, complex subunit CTC1;
                     cl24054"
                     /db_xref="CDD:474136"
     CDS             1..1280
                     /gene="CTC1"
                     /coded_by="XM_054084474.1:99..3941"
                     /db_xref="GeneID:104055869"
ORIGIN      
        1 magtsvaeqr wlqaarefar rafpdgegps gtepplldvv lrrlrdvggg dlplgysfis
       61 isdllhqqrm pccshltwst nefkdwaqqg qgalpmqdal praylilvay ltdgrqenke
      121 klvdgclyvk dntgiipcel lhlelewlga lflfpswsyi pqtdksaagy veilvdpvpv
      181 nllkevpdti pvsfpasakp lltsripckr rskltvagel arrgpllcir hksffflflk
      241 clisavwvpv lvqkpnqlaw hhslqlgqry titglsissl kksgqrifvt gvsscllpyc
      301 aeqvgeqpld nacqgestqs ssletaeqls dslelgveek rtgstrdski isyvgtvtki
      361 lnvqaglfll ddkvclclay qqllssargl rpgacvelid vhllqkplvs fpfvvlgacl
      421 sstivlksfs rlsipyqara ssgnlylqll frynldmsly lwlvsllegf eerfscffgr
      481 rrllhsskhq npgaaekflv pllqaavpdr eeardiydei lakahqcplq kyltmtppcq
      541 vpslsvicrv avqksweafs psqllsplea qhmgtqelnr rlawsyctls agsfqprlil
      601 qgvlrvssrs sslqlqdkss mlpcvishkd gspfahtsli gsllqvesyq lvverffqtd
      661 fpswehlenl dhvrekkysv yvqfyfedvq vlhapegqiq kglrsgssss lrrkhgsslt
      721 seletseakm lkledpkpdt htaencqgcq sstgrtncvs rlflvtqkeg lmlrnyqlpr
      781 kedgkgpelq csfqatvlwl gkprlwscpr eignlpelde mdcdgeegmt qekalllfmg
      841 kslrwfpflh ldglycfivp ccsdlevfhk lccppmpeks lsrsscplcl pvqdtwhlqh
      901 emwisclpec qlaarsvltg veqrissipe vlsngftgsl vsfsgeiver tlcaspknek
      961 psvtaglqkq kgillasdhi vklsvsvapg spavvdiyia ptylqhlwgl lpgakilfqn
     1021 lerkvsrfhn vyctyiassc vsiiglptsy lpfssssage tsppslvfls nlqshlqhls
     1081 qarilchvsy vltlslqwvc slcssifkeg rctrhsppcp shlgvrqasa rvlvedgtge
     1141 alvlcrnqhv aamlglslld wealqncvqs rgsvsiqhee ttgmgcveep edfiacyirs
     1201 lcrsplicrp illdfsldrk pskilqptpl qlrnfrcgev efvsqvgprl sllclnveev
     1261 eqdalnylns erirrtssyc
//
LOCUS       XP_053940455            1231 aa            linear   VRT 09-MAR-2023
DEFINITION  CST complex subunit CTC1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053940455
VERSION     XP_053940455.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084480.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1231
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1231
                     /product="CST complex subunit CTC1 isoform X2"
                     /calculated_mol_wt=136698
     Region          52..1227
                     /region_name="CTC1"
                     /note="CST, telomere maintenance, complex subunit CTC1;
                     cl24054"
                     /db_xref="CDD:474136"
     CDS             1..1231
                     /gene="CTC1"
                     /coded_by="XM_054084480.1:99..3794"
                     /db_xref="GeneID:104055869"
ORIGIN      
        1 magtsvaeqr wlqaarefar rafpdgegps gtepplldvv lrrlrdvggg dlplgysfis
       61 isdllhqqrm pccshltwst nefkdwaqqg qgalpmqdal praylilvay ltdgrqenke
      121 klvdgclyvk dntgiipcel lhlelewlga lflfpswsyi pqtdksaagy veilvdpvpv
      181 nllkevpdti pvsfpasakp lltsripckr rskltvagel arrgpllcir hksffflflk
      241 clisavwvpv lvqkpnqlaw hhslqlgqry titglsissl kksgqrifvt gvsscllpyc
      301 aeqvgeqpld nacqgestqs ssletaeqls dslelgveek rtgstrdski isyvgtvtki
      361 lnvqaglfll ddkvclclay qqllssargl rpgacvelid vhllqkplvs fpfvvlgacl
      421 sstivlksfs rlsipyqara ssgnlylqll frynldmsly lwlvsllegf eerfscffgr
      481 rrllhsskhq npgaaekflv pllqaavpdr eeardiydei lakahqcplq kyltmtppcq
      541 vpslsvicrv avqksweafs psqllsplea qhmgtqelnr rlawsyctls agsfqprlil
      601 qgvlrvssrs sslqlqdkss mlpcvishkd gspfahtsli gsllqvesyq lvverffqtd
      661 fpswehlenl dhvrekkysv yvqfyfedvq vlhapegqiq kglrsgssss lrrkhgsslt
      721 seletseakm lkledpkpdt htaencqgcq sstgrtncvs rlflvtqkeg lmlrnyqlpr
      781 kedgkgpelq csfqatvlwl gkprlwscpr eignlpelde mdcdgeegmt qekalllfmg
      841 kslrwfpflh ldglycfivp ccsdlevfhk lccppmpeks lsrsscplcl pvqdtwhlqh
      901 emwisclpec qlaarsvltg veqrissipe vlsngftgsl vsfsgeiver tlcaspknek
      961 psvtaglqkq kgillasdhi vklsvsvapg spavvdiyia ptylqhlwgl lpgakilfqn
     1021 lerkvsrfhn vyctyiassc vsiiglptsy lpfssssage tsppslvfls nlqshlqhls
     1081 qarilchvsy vltlslqwvc slcssifkeg rctrhsppcp shlgvrqasa rvlvedgtge
     1141 alvlcrnqhv aamlglslld wealqncvqs rgsvsiqhee ttgmgcveep edfiacyirs
     1201 lcrsplicrp illdfsldrk pskilqpsls g
//
LOCUS       XP_053940462            1152 aa            linear   VRT 09-MAR-2023
DEFINITION  CST complex subunit CTC1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053940462
VERSION     XP_053940462.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084487.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1152
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1152
                     /product="CST complex subunit CTC1 isoform X3"
                     /calculated_mol_wt=128279
     Region          12..1129
                     /region_name="CTC1"
                     /note="CST, telomere maintenance, complex subunit CTC1;
                     cl24054"
                     /db_xref="CDD:474136"
     CDS             1..1152
                     /gene="CTC1"
                     /coded_by="XM_054084487.1:207..3665"
                     /db_xref="GeneID:104055869"
ORIGIN      
        1 mnlkiglskd kllhlelewl galflfpsws yipqtdksaa gyveilvdpv pvnllkevpd
       61 tipvsfpasa kplltsripc krrskltvag elarrgpllc irhksffflf lkclisavwv
      121 pvlvqkpnql awhhslqlgq rytitglsis slkksgqrif vtgvsscllp ycaeqvgeqp
      181 ldnacqgest qsssletaeq lsdslelgve ekrtgstrds kiisyvgtvt kilnvqaglf
      241 llddkvclcl ayqqllssar glrpgacvel idvhllqkpl vsfpfvvlga clsstivlks
      301 fsrlsipyqa rassgnlylq llfrynldms lylwlvslle gfeerfscff grrrllhssk
      361 hqnpgaaekf lvpllqaavp dreeardiyd eilakahqcp lqkyltmtpp cqvpslsvic
      421 rvavqkswea fspsqllspl eaqhmgtqel nrrlawsyct lsagsfqprl ilqgvlrvss
      481 rssslqlqdk ssmlpcvish kdgspfahts ligsllqves yqlvverffq tdfpswehle
      541 nldhvrekky svyvqfyfed vqvlhapegq iqkglrsgss sslrrkhgss ltseletsea
      601 kmlkledpkp dthtaencqg cqsstgrtnc vsrlflvtqk eglmlrnyql prkedgkgpe
      661 lqcsfqatvl wlgkprlwsc preignlpel demdcdgeeg mtqekalllf mgkslrwfpf
      721 lhldglycfi vpccsdlevf hklccppmpe kslsrsscpl clpvqdtwhl qhemwisclp
      781 ecqlaarsvl tgveqrissi pevlsngftg slvsfsgeiv ertlcaspkn ekpsvtaglq
      841 kqkgillasd hivklsvsva pgspavvdiy iaptylqhlw gllpgakilf qnlerkvsrf
      901 hnvyctyias scvsiiglpt sylpfssssa getsppslvf lsnlqshlqh lsqarilchv
      961 syvltlslqw vcslcssifk egrctrhspp cpshlgvrqa sarvlvedgt gealvlcrnq
     1021 hvaamlglsl ldwealqncv qsrgsvsiqh eettgmgcve epedfiacyi rslcrsplic
     1081 rpilldfsld rkpskilqpt plqlrnfrcg evefvsqvgp rlsllclnve eveqdalnyl
     1141 nserirrtss yc
//
LOCUS       XP_053940475             288 aa            linear   VRT 09-MAR-2023
DEFINITION  V-set domain-containing T-cell activation inhibitor 1 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053940475
VERSION     XP_053940475.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084500.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..288
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..288
                     /product="V-set domain-containing T-cell activation
                     inhibitor 1 isoform X1"
                     /calculated_mol_wt=30975
     Region          46..154
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          59..63
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409576"
     Region          75..79
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409576"
     Region          120..124
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409576"
     Region          134..139
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409576"
     Region          147..150
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409576"
     Region          172..248
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     CDS             1..288
                     /gene="VTCN1"
                     /coded_by="XM_054084500.1:1216..2082"
                     /db_xref="GeneID:104055870"
ORIGIN      
        1 mlccllppll grsayiacmt mviiilavai aliigfgvsg krsisvttlt spgnigqrgv
       61 lgctfepdir mgnieirwak agiaglvhef kggkdhlqeq dasfqgrtav fadqvisgna
      121 slelkdvqls dagtywcsvt targsgaavl qyrtgaftip kvhvenhssr dtlqceaprw
      181 fprpsvhwma csdsgeylph vantsyelna enitlkvvsf lhnitanaty tcvienniak
      241 atgnikvtdf sitrgtnlql mnpnaetass slpsfpwmll lllcllsi
//
LOCUS       XP_053940484             288 aa            linear   VRT 09-MAR-2023
DEFINITION  V-set domain-containing T-cell activation inhibitor 1 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053940484
VERSION     XP_053940484.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084509.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..288
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..288
                     /product="V-set domain-containing T-cell activation
                     inhibitor 1 isoform X2"
                     /calculated_mol_wt=31185
     Region          46..154
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          59..63
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409576"
     Region          75..79
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409576"
     Region          120..124
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409576"
     Region          134..139
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409576"
     Region          147..150
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409576"
     Region          172..248
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     CDS             1..288
                     /gene="VTCN1"
                     /coded_by="XM_054084509.1:1207..2073"
                     /db_xref="GeneID:104055870"
ORIGIN      
        1 mmfpvtsqaw gqcmtaagsl aflcthhftf lippsfllag krsisvttlt spgnigqrgv
       61 lgctfepdir mgnieirwak agiaglvhef kggkdhlqeq dasfqgrtav fadqvisgna
      121 slelkdvqls dagtywcsvt targsgaavl qyrtgaftip kvhvenhssr dtlqceaprw
      181 fprpsvhwma csdsgeylph vantsyelna enitlkvvsf lhnitanaty tcvienniak
      241 atgnikvtdf sitrgtnlql mnpnaetass slpsfpwmll lllcllsi
//
LOCUS       XP_009555351             281 aa            linear   VRT 09-MAR-2023
DEFINITION  V-set domain-containing T-cell activation inhibitor 1 isoform X3
            [Cuculus canorus].
ACCESSION   XP_009555351
VERSION     XP_009555351.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557056.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555351.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..281
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..281
                     /product="V-set domain-containing T-cell activation
                     inhibitor 1 isoform X3"
                     /calculated_mol_wt=30277
     Region          39..147
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          52..56
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409576"
     Region          68..72
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409576"
     Region          113..117
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409576"
     Region          127..132
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409576"
     Region          140..143
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409576"
     Region          165..241
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     CDS             1..281
                     /gene="VTCN1"
                     /coded_by="XM_009557056.2:987..1832"
                     /db_xref="GeneID:104055870"
ORIGIN      
        1 masqgqvvfw smtmviiila vaialiigfg vsgkrsisvt tltspgnigq rgvlgctfep
       61 dirmgnieir wakagiaglv hefkggkdhl qeqdasfqgr tavfadqvis gnaslelkdv
      121 qlsdagtywc svttargsga avlqyrtgaf tipkvhvenh ssrdtlqcea prwfprpsvh
      181 wmacsdsgey lphvantsye lnaenitlkv vsflhnitan atytcvienn iakatgnikv
      241 tdfsitrgtn lqlmnpnaet assslpsfpw mlllllclls i
//
LOCUS       XP_053940498             289 aa            linear   VRT 09-MAR-2023
DEFINITION  V-set domain-containing T-cell activation inhibitor 1 isoform X4
            [Cuculus canorus].
ACCESSION   XP_053940498
VERSION     XP_053940498.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084523.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..289
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..289
                     /product="V-set domain-containing T-cell activation
                     inhibitor 1 isoform X4"
                     /calculated_mol_wt=31022
     Region          39..147
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          52..56
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409576"
     Region          68..72
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409576"
     Region          113..117
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409576"
     Region          127..132
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409576"
     Region          140..143
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409576"
     Region          165..241
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     CDS             1..289
                     /gene="VTCN1"
                     /coded_by="XM_054084523.1:987..1856"
                     /db_xref="GeneID:104055870"
ORIGIN      
        1 masqgqvvfw smtmviiila vaialiigfg vsgkrsisvt tltspgnigq rgvlgctfep
       61 dirmgnieir wakagiaglv hefkggkdhl qeqdasfqgr tavfadqvis gnaslelkdv
      121 qlsdagtywc svttargsga avlqyrtgaf tipkvhvenh ssrdtlqcea prwfprpsvh
      181 wmacsdsgey lphvantsye lnaenitlkv vsflhnitan atytcvienn iakatgnikv
      241 tashcssatd fsitrgtnlq lmnpnaetas sslpsfpwml llllcllsi
//
LOCUS       XP_053940512             246 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: tripartite motif-containing protein 45
            [Cuculus canorus].
ACCESSION   XP_053940512
VERSION     XP_053940512.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084537.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..246
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..246
                     /product="LOW QUALITY PROTEIN: tripartite motif-containing
                     protein 45"
                     /calculated_mol_wt=27263
     Region          21..63
                     /region_name="Bbox_SF"
                     /note="B-box-type zinc finger superfamily; cl00034"
                     /db_xref="CDD:469587"
     Region          67..185
                     /region_name="CC_brat-like"
                     /note="coiled-coil (CC) domain of Drosophila brain tumor
                     (brat) and similar proteins; cl29238"
                     /db_xref="CDD:475168"
     Site            order(71,74..75,77..79,82,85,99..100,103,106..107,
                     110..111,114,121..122,125,127,130..131,134,144..145,148,
                     152,155..156,159..160,162..163,171,174..175,178,181..182)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467843"
     CDS             1..246
                     /gene="TRIM45"
                     /coded_by="XM_054084537.1:158..898"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /db_xref="GeneID:104055871"
ORIGIN      
        1 masravaele ntkdcnqagk pllcpshpte elrlfceqcd qlvcqncity rhqqhpydft
       61 gnvihrhgda lremlkntqe hmdtlkdvls qiddmgsaih sragavatei clfasgyvka
      121 ieehrxlkql edlkvqkanl lhlqkarlqq llldmrtave fterlltsgs dleilitkge
      181 vasrlaklns iaynthscvd dgiqfcpkkr agqccgyevf gailnkvlnp srctlhgegk
      241 avlyns
//
LOCUS       XP_053940521             664 aa            linear   VRT 09-MAR-2023
DEFINITION  deuterosome assembly protein 1 [Cuculus canorus].
ACCESSION   XP_053940521
VERSION     XP_053940521.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084546.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..664
                     /product="deuterosome assembly protein 1"
                     /calculated_mol_wt=77598
     Region          20..279
                     /region_name="CEP63"
                     /note="Centrosomal protein of 63 kDa; pfam17045"
                     /db_xref="CDD:465338"
     Region          <226..>485
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..664
                     /gene="DEUP1"
                     /coded_by="XM_054084546.1:1..1995"
                     /db_xref="GeneID:104064193"
ORIGIN      
        1 mfcsmeqdlg afqeqvvtkt spceaelqel vhqidimvns kkmewekkmk aletkiyiqd
       61 qelastkikl dqkgqevgll qqkledlqkt kyemaqnyet qlqalksqfs klthsykklk
      121 ayqlkqtmae srekceesle tpserrnlsk kleefkaksk eldkkgticq kyhlylddqr
      181 kslsekcnlf qkqipnhqfe isnkkqtqee rvtygqpesk mdeliieklk atvneivink
      241 dkleeenlkl qedlkmyqnq cqsmeagfse irnelqsrda lwrriqlecq qlhmelskir
      301 eykdmqeiqi khqsscpqlt eqegntntel llltqsqqhq reelnkirnh lyreeqshcs
      361 eqdrmkteis dlteelhqke itiatimeka sllerqlkme leiknkllak qqlldfqyea
      421 rrsgnthrke mmenqgcksc mhmdlsnkeh gnvtpsihkq ehesvrlqns lielqndtet
      481 svlacmdtyr etkhsykths kmqekeertl rkkdawkieh qqiamftacg chrncspasy
      541 gqgnitgsks dsafpscald rgyekktgdk spslpmgypl gfggpfpekg stgtllspvy
      601 daeeiklssp semsflatte kflqeeerht refeerlnlh leelqiysen tlkkyartqq
      661 srst
//
LOCUS       XP_053940534            1098 aa            linear   VRT 09-MAR-2023
DEFINITION  importin-5 [Cuculus canorus].
ACCESSION   XP_053940534
VERSION     XP_053940534.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084559.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1098
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1098
                     /product="importin-5"
                     /calculated_mol_wt=123407
     Region          14..>635
                     /region_name="KAP95"
                     /note="Karyopherin (importin) beta [Intracellular
                     trafficking and secretion]; COG5215"
                     /db_xref="CDD:227540"
     Region          178..243
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          269..358
                     /region_name="Importin_rep_4"
                     /note="Importin repeat; pfam18808"
                     /db_xref="CDD:408579"
     Region          272..297
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          309..349
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Site            order(380..381,384,387..388,418..419,422,425..426,429,
                     461..462,465,468..469,472,511..512,515,518..519,556..557,
                     560,563..564)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:293787"
     Region          401..429
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          442..473
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          482..519
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          532..565
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          766..875
                     /region_name="Importin_rep_6"
                     /note="Importin repeat 6; pfam18829"
                     /db_xref="CDD:465881"
     Region          866..891
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Site            order(883..884,887,890..891,924..925,928,931..932,937,
                     965..966,975,978..979,982,1008..1009,1012,1015..1016)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:293787"
     Region          907..937
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          920..967
                     /region_name="HEAT_EZ"
                     /note="HEAT-like repeat; pfam13513"
                     /db_xref="CDD:463906"
     Region          947..983
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          992..1016
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          1006..1052
                     /region_name="Importin_rep_5"
                     /note="Importin repeat; pfam18816"
                     /db_xref="CDD:465877"
     CDS             1..1098
                     /gene="IPO5"
                     /coded_by="XM_054084559.1:93..3389"
                     /db_xref="GeneID:104057294"
ORIGIN      
        1 maaaaaveqe qfylllgnll spdnavrkqa eetyenipgq skitfllqai rntaaaeear
       61 qmaavllrrl lssafeevyp alspddqtsi ksgllmiiql etqstmrkkv cdivaeltrn
      121 lidedgnnqw pevlkflfds vssqnvglre aalhifwnfp gifgnqqqhy levikrmlaq
      181 cmqdqehpsi rslsaraaaa fvlanehnlp llkhfadllp gilqvvneac yrnddsvlks
      241 lvemadsvpk ylrphleptl qlslklcada nlsnmqrhla levivtlset aaamlrrhtn
      301 ivaqaipqml ammvdledde ewanadeied ddfdsnavag esaldrmtcg lggklvlpvi
      361 kehimqmlqn pdwkyrhagl malsvigegc hqqmegilne ivnfvllflq dphprvryaa
      421 cnaigqmatd fapgfqkkfh ekviaallqt medqgnprvq ahaasalinf tedcpkslli
      481 pyldnlvkhl hstmviklqe liqkgtklvl eqvvtsiasv adtaeekfvp yydlfmpslk
      541 hivenavqke lrllrgktie cisliglavg kekfmqdasd vmqlllktqt dfsdledddp
      601 qisymisawa rmckilgkef qqylpvvmgp lmktasikpe valldtqdme nmsdddgwef
      661 vnlgdqqsfg iktagleeka tacqmlvcya kelkegfvey teqvvklmvp llkfyfhdgv
      721 rvaaaesmpl llecarvrgp eyltqmwhfm cdalikaigt epdsdvlsei mhsfakciev
      781 mgdgclnneh feelggilkg kleehfknqe lrqvkrqded ydeqveeslq deddsdvyil
      841 tkvsdilhsi fssykekvlp wferllpliv nlicphrpwp drqwglcmfd divehcspss
      901 fkyaeyflrp mlqsicdnsp evrqaaaygv gvmaqfggds yrpfctealp llvrviqspd
      961 aktkenvnat encisavgki mkfkpdcvnv eevlphwlsw lplhedkeea vhtfnylcdl
     1021 iesnnpvvlg pnnsnlprif giiadgeihe aikhedpctk rlanvvrqvq tsgglwteci
     1081 sqlnadqqaa iqellnsa
//
LOCUS       XP_053940540             252 aa            linear   VRT 09-MAR-2023
DEFINITION  outer dense fiber protein 3B [Cuculus canorus].
ACCESSION   XP_053940540
VERSION     XP_053940540.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084565.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..252
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..252
                     /product="outer dense fiber protein 3B"
                     /calculated_mol_wt=26662
     CDS             1..252
                     /gene="ODF3B"
                     /coded_by="XM_054084565.1:25..783"
                     /db_xref="GeneID:128854125"
ORIGIN      
        1 maaqpwvgpw rphrprgpia alhaapgpky glpsgvgwnl hdpsrprapa ysfgrrtpgv
       61 aqqlspgpay llppgttarg kdgtpafsih grprdlllfq tpgpgryspe rataiafrra
      121 psctmgargr aggtsttpgp aayrlppmlg phmvnkpsap nfsilgrstv gafdrdhskt
      181 pgpcgydpva advykrrsph fsilgrtpqp gdpntkpapn ayspqqprqp rgptfgvrhs
      241 pfvtplipdg id
//
LOCUS       XP_053940546             252 aa            linear   VRT 09-MAR-2023
DEFINITION  outer dense fiber protein 3B [Cuculus canorus].
ACCESSION   XP_053940546
VERSION     XP_053940546.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084571.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..252
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..252
                     /product="outer dense fiber protein 3B"
                     /calculated_mol_wt=26662
     CDS             1..252
                     /gene="ODF3B"
                     /coded_by="XM_054084571.1:10..768"
                     /db_xref="GeneID:128854125"
ORIGIN      
        1 maaqpwvgpw rphrprgpia alhaapgpky glpsgvgwnl hdpsrprapa ysfgrrtpgv
       61 aqqlspgpay llppgttarg kdgtpafsih grprdlllfq tpgpgryspe rataiafrra
      121 psctmgargr aggtsttpgp aayrlppmlg phmvnkpsap nfsilgrstv gafdrdhskt
      181 pgpcgydpva advykrrsph fsilgrtpqp gdpntkpapn ayspqqprqp rgptfgvrhs
      241 pfvtplipdg id
//
LOCUS       XP_009563249             379 aa            linear   VRT 09-MAR-2023
DEFINITION  RIB43A-like with coiled-coils protein 2 [Cuculus canorus].
ACCESSION   XP_009563249
VERSION     XP_009563249.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009564954.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009563249.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..379
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..379
                     /product="RIB43A-like with coiled-coils protein 2"
                     /calculated_mol_wt=45236
     Region          9..379
                     /region_name="RIB43A"
                     /note="pfam05914"
                     /db_xref="CDD:461780"
     CDS             1..379
                     /gene="RIBC2"
                     /coded_by="XM_009564954.2:15..1154"
                     /db_xref="GeneID:104062831"
ORIGIN      
        1 msrlwvqrer qeaaalerrr qrelqrqsri fnarvrtigv dknaldsqvk drkiqetaek
       61 awneefanem kqndkimcml eeqqksairn inkdinefrk nfqkpetrre fdlsdpqalk
      121 kdraarlsdn dprctvsgmq kfmgedlnyd qrmkfqkeql rewslqqqre wknaladqkf
      181 addlydksri eldqktmeqq qkeeenrrav cvatkdfnra qaaevaekkk mekyqkmkdd
      241 mdeissllqg dflsenpeqa issfgrhrvi pdrwkgmsqd qlmairssqq qqvleklrlk
      301 eeerqkeaew dkqivqtara llilerqqqr qsrehrrald nvnaelsqeq kakniylkee
      361 eysnvptaqf yaqfnttsr
//
LOCUS       XP_053940565             349 aa            linear   VRT 09-MAR-2023
DEFINITION  protein mono-ADP-ribosyltransferase PARP11 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053940565
VERSION     XP_053940565.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084590.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..349
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..349
                     /product="protein mono-ADP-ribosyltransferase PARP11
                     isoform X1"
                     /calculated_mol_wt=40109
     Region          48..118
                     /region_name="WWE"
                     /note="WWE domain; pfam02825"
                     /db_xref="CDD:460715"
     Region          213..348
                     /region_name="TCCD_inducible_PARP_like"
                     /note="Poly(ADP-ribose) polymerases catalyse the covalent
                     attachment of ADP-ribose units from NAD+ to itself and to
                     a limited number of other DNA binding proteins, which
                     decreases their affinity for DNA. Poly(ADP-ribose)
                     polymerase is a regulatory component...; cd01439"
                     /db_xref="CDD:238719"
     Site            order(215..219,222,226,230..232,234,247..249,259,331)
                     /site_type="other"
                     /note="nad+ binding pocket [chemical binding]"
                     /db_xref="CDD:238719"
     CDS             1..349
                     /gene="PARP11"
                     /coded_by="XM_054084590.1:98..1147"
                     /db_xref="GeneID:104068408"
ORIGIN      
        1 mwgaarggaa aaaaaadaem lqrtsedffp kmessveemd tsdtqwgwfy laecgkwhmf
       61 qtdsnshcsv ssedieksfr tnphgsvsft takfnytldf tamkqtnltt lkqrpikrap
      121 fsisafsfic eneaipmpsh wenvnteepy qliplqkktn eynevsslfg ktmdshrikr
      181 ikriqnldlw effcrkkaql kkkrgvptin eqmlfhgtsn efveaicihn fdwringmha
      241 avygkgtyfa rdasyssrfc kedmkhgdtf qihgvnlqph lhrpdkvmfl arvltgdyin
      301 gdskymrpps kdgsfvnlyd scvdntwnpk ifvifdanqi ypeyliefc
//
LOCUS       XP_053940576             334 aa            linear   VRT 09-MAR-2023
DEFINITION  protein mono-ADP-ribosyltransferase PARP11 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053940576
VERSION     XP_053940576.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084601.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..334
                     /product="protein mono-ADP-ribosyltransferase PARP11
                     isoform X2"
                     /calculated_mol_wt=38973
     Region          33..103
                     /region_name="WWE"
                     /note="WWE domain; pfam02825"
                     /db_xref="CDD:460715"
     Region          198..333
                     /region_name="TCCD_inducible_PARP_like"
                     /note="Poly(ADP-ribose) polymerases catalyse the covalent
                     attachment of ADP-ribose units from NAD+ to itself and to
                     a limited number of other DNA binding proteins, which
                     decreases their affinity for DNA. Poly(ADP-ribose)
                     polymerase is a regulatory component...; cd01439"
                     /db_xref="CDD:238719"
     Site            order(200..204,207,211,215..217,219,232..234,244,316)
                     /site_type="other"
                     /note="nad+ binding pocket [chemical binding]"
                     /db_xref="CDD:238719"
     CDS             1..334
                     /gene="PARP11"
                     /coded_by="XM_054084601.1:991..1995"
                     /db_xref="GeneID:104068408"
ORIGIN      
        1 mfqemlqrts edffpkmess veemdtsdtq wgwfylaecg kwhmfqtdsn shcsvssedi
       61 eksfrtnphg svsfttakfn ytldftamkq tnlttlkqrp ikrapfsisa fsficeneai
      121 pmpshwenvn teepyqlipl qkktneynev sslfgktmds hrikrikriq nldlweffcr
      181 kkaqlkkkrg vptineqmlf hgtsnefvea icihnfdwri ngmhaavygk gtyfardasy
      241 ssrfckedmk hgdtfqihgv nlqphlhrpd kvmflarvlt gdyingdsky mrppskdgsf
      301 vnlydscvdn twnpkifvif danqiypeyl iefc
//
LOCUS       XP_053940583             330 aa            linear   VRT 09-MAR-2023
DEFINITION  protein mono-ADP-ribosyltransferase PARP11 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053940583
VERSION     XP_053940583.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084608.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..330
                     /product="protein mono-ADP-ribosyltransferase PARP11
                     isoform X3"
                     /calculated_mol_wt=38438
     Region          29..99
                     /region_name="WWE"
                     /note="WWE domain; pfam02825"
                     /db_xref="CDD:460715"
     Region          194..329
                     /region_name="TCCD_inducible_PARP_like"
                     /note="Poly(ADP-ribose) polymerases catalyse the covalent
                     attachment of ADP-ribose units from NAD+ to itself and to
                     a limited number of other DNA binding proteins, which
                     decreases their affinity for DNA. Poly(ADP-ribose)
                     polymerase is a regulatory component...; cd01439"
                     /db_xref="CDD:238719"
     Site            order(196..200,203,207,211..213,215,228..230,240,312)
                     /site_type="other"
                     /note="nad+ binding pocket [chemical binding]"
                     /db_xref="CDD:238719"
     CDS             1..330
                     /gene="PARP11"
                     /coded_by="XM_054084608.1:143..1135"
                     /db_xref="GeneID:104068408"
ORIGIN      
        1 mlqrtsedff pkmessveem dtsdtqwgwf ylaecgkwhm fqtdsnshcs vssedieksf
       61 rtnphgsvsf ttakfnytld ftamkqtnlt tlkqrpikra pfsisafsfi ceneaipmps
      121 hwenvnteep yqliplqkkt neynevsslf gktmdshrik rikriqnldl weffcrkkaq
      181 lkkkrgvpti neqmlfhgts nefveaicih nfdwringmh aavygkgtyf ardasyssrf
      241 ckedmkhgdt fqihgvnlqp hlhrpdkvmf larvltgdyi ngdskymrpp skdgsfvnly
      301 dscvdntwnp kifvifdanq iypeyliefc
//
LOCUS       XP_053940599             257 aa            linear   VRT 09-MAR-2023
DEFINITION  C-type lectin domain family 2 member B-like isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053940599
VERSION     XP_053940599.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084624.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..257
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..257
                     /product="C-type lectin domain family 2 member B-like
                     isoform X1"
                     /calculated_mol_wt=29572
     Region          <1..>33
                     /region_name="Tektin"
                     /note="Tektin family; pfam03148"
                     /db_xref="CDD:460827"
     Region          141..251
                     /region_name="CLECT_NK_receptors_like"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in natural killer cell receptors (NKRs); cd03593"
                     /db_xref="CDD:153063"
     Site            order(196,221,236,238..239)
                     /site_type="other"
                     /note="ligand binding surface [chemical binding]"
                     /db_xref="CDD:153063"
     CDS             1..257
                     /gene="LOC128854132"
                     /coded_by="XM_054084624.1:266..1039"
                     /db_xref="GeneID:128854132"
ORIGIN      
        1 mrcqfnnvnv sftnriakta daknkiqthl akiflhqvhs skylnelmes tdeetprpil
       61 maqgllgnvd skqdaeqkva vrswvrktms fckqwfcpsp acwlhslvaf vlgivlmvii
      121 walvgqqtdt shhekfphdq cpsewiyyrr kcyfiseeek dwtfsqifct knnallvvfe
      181 nleemhslak ylriddswig lhkiggsffw engialdvdl fqirnhsdca yldastvsts
      241 acslprrwic sfhkgva
//
LOCUS       XP_053940602             242 aa            linear   VRT 09-MAR-2023
DEFINITION  C-type lectin domain family 2 member B-like isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053940602
VERSION     XP_053940602.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084627.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..242
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..242
                     /product="C-type lectin domain family 2 member B-like
                     isoform X2"
                     /calculated_mol_wt=27762
     Region          <1..>34
                     /region_name="Tektin"
                     /note="Tektin family; pfam03148"
                     /db_xref="CDD:460827"
     Region          126..236
                     /region_name="CLECT_NK_receptors_like"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in natural killer cell receptors (NKRs); cd03593"
                     /db_xref="CDD:153063"
     Site            order(181,206,221,223..224)
                     /site_type="other"
                     /note="ligand binding surface [chemical binding]"
                     /db_xref="CDD:153063"
     CDS             1..242
                     /gene="LOC128854132"
                     /coded_by="XM_054084627.1:266..994"
                     /db_xref="GeneID:128854132"
ORIGIN      
        1 mrcqfnnvnv sftnriakta daknkiqthl akmestdeet prpilmaqgl lgnvdskqda
       61 eqkvavrswv rktmsfckqw fcpspacwlh slvafvlgiv lmviiwalvg qqtdtshhek
      121 fphdqcpsew iyyrrkcyfi seeekdwtfs qifctknnal lvvfenleem hslakylrid
      181 dswiglhkig gsffwengia ldvdlfqirn hsdcayldas tvstsacslp rrwicsfhkg
      241 va
//
LOCUS       XP_053940603             217 aa            linear   VRT 09-MAR-2023
DEFINITION  C-type lectin domain family 2 member B-like isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053940603
VERSION     XP_053940603.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084628.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..217
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..217
                     /product="C-type lectin domain family 2 member B-like
                     isoform X3"
                     /calculated_mol_wt=25018
     Region          101..211
                     /region_name="CLECT_NK_receptors_like"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in natural killer cell receptors (NKRs); cd03593"
                     /db_xref="CDD:153063"
     Site            order(156,181,196,198..199)
                     /site_type="other"
                     /note="ligand binding surface [chemical binding]"
                     /db_xref="CDD:153063"
     CDS             1..217
                     /gene="LOC128854132"
                     /coded_by="XM_054084628.1:134..787"
                     /db_xref="GeneID:128854132"
ORIGIN      
        1 mrqqdelmes tdeetprpil maqgllgnvd skqdaeqkva vrswvrktms fckqwfcpsp
       61 acwlhslvaf vlgivlmvii walvgqqtdt shhekfphdq cpsewiyyrr kcyfiseeek
      121 dwtfsqifct knnallvvfe nleemhslak ylriddswig lhkiggsffw engialdvdl
      181 fqirnhsdca yldastvsts acslprrwic sfhkgva
//
LOCUS       XP_053940612             210 aa            linear   VRT 09-MAR-2023
DEFINITION  C-type lectin domain family 2 member B-like isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053940612
VERSION     XP_053940612.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084637.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..210
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..210
                     /product="C-type lectin domain family 2 member B-like
                     isoform X4"
                     /calculated_mol_wt=24117
     Region          94..204
                     /region_name="CLECT_NK_receptors_like"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in natural killer cell receptors (NKRs); cd03593"
                     /db_xref="CDD:153063"
     Site            order(149,174,189,191..192)
                     /site_type="other"
                     /note="ligand binding surface [chemical binding]"
                     /db_xref="CDD:153063"
     CDS             1..210
                     /gene="LOC128854132"
                     /coded_by="XM_054084637.1:124..756"
                     /db_xref="GeneID:128854132"
ORIGIN      
        1 mestdeetpr pilmaqgllg nvdskqdaeq kvavrswvrk tmsfckqwfc pspacwlhsl
       61 vafvlgivlm viiwalvgqq tdtshhekfp hdqcpsewiy yrrkcyfise eekdwtfsqi
      121 fctknnallv vfenleemhs lakylridds wiglhkiggs ffwengiald vdlfqirnhs
      181 dcayldastv stsacslprr wicsfhkgva
//
LOCUS       XP_053940662             976 aa            linear   VRT 09-MAR-2023
DEFINITION  exocyst complex component 4 [Cuculus canorus].
ACCESSION   XP_053940662
VERSION     XP_053940662.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084687.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..976
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..976
                     /product="exocyst complex component 4"
                     /calculated_mol_wt=110762
     Region          <57..143
                     /region_name="Sec8_exocyst"
                     /note="Sec8 exocyst complex component specific domain;
                     pfam04048"
                     /db_xref="CDD:367782"
     CDS             1..976
                     /gene="EXOC4"
                     /coded_by="XM_054084687.1:11..2941"
                     /db_xref="GeneID:104061457"
ORIGIN      
        1 maageaagry rstmskskdp sgllisvirt lstsddvedr etekgrleea yekcdrdldq
       61 livqhytelt tairtyqsit eritnsrnki kqvkenllsc kmllhckrde lrklwiegie
      121 hkhvlnllde ienikqvpqk leqcmaskry lnatdmlvsa vdslegpllq veglsdlrle
      181 lhskkmnmhl vlidelhrhl yikstsrvgq rtkekgriss lvkdaspval mdvtnlstpr
      241 kfletsqfst pgsssvrets lleikedtel dpeenstvfm gilikglakl kkipetvkai
      301 qdrleqelkq ivkrsttqva dngyqrgenl sqenqprlll ellellfdkf navaaahsvv
      361 lghlqqtvas pcsqydgdik lydmvdvwvk iqdvlqmllt eyldmkntrt asepsaqlsy
      421 assgrefaaf fakkkpqrpk nplfkfesss haismsaylr eqrrelysrs gelqggpddn
      481 liegggskfv ckpgarniti ifhpllrfiq eiehamelgp tkqcplrefl tmyiknifln
      541 qvlaeinkei egvtkasdpl kilanadtmk ilgvqrpllq stvivektvq dlmnlmhdls
      601 aysdqflnmv cvklqeykdt calayrsivq sdeklvisas wakdddisrl lkslpnwcnm
      661 tqpkqlrpkr eeeedfiraa fgkesevlig nlgdklipqq eilrdvsdlk alanmhesle
      721 wlagrtkaal snlsatqtms pgqdshasme hlpasehilq tlselarsfq emadrcllvl
      781 hlevrvhcfh yliplakqgn yaivanvesm dydplvvrln kdisaieeam saslqqhkfq
      841 yifeglghli scilingahy fkrisesgik kmcrnifilq qnltnitmsr eadldfarqy
      901 yemlyntade llnlvvdqgv kyteleyiya lnllhrsqtg vgdqttqnmr lqrlkeiice
      961 qaaikqatkd kkittv
//
LOCUS       XP_053940673            1181 aa            linear   VRT 09-MAR-2023
DEFINITION  PR domain zinc finger protein 15 isoform X1 [Cuculus canorus].
ACCESSION   XP_053940673
VERSION     XP_053940673.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084698.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1181
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1181
                     /product="PR domain zinc finger protein 15 isoform X1"
                     /calculated_mol_wt=134009
     Region          <12..37
                     /region_name="zf_PR_Knuckle"
                     /note="PR zinc knuckle motif; pfam18445"
                     /db_xref="CDD:375871"
     Region          41..166
                     /region_name="PR-SET_PRDM15"
                     /note="PR-SET domain found in PR domain zinc finger
                     protein 15 (PRDM15) and similar proteins; cd19199"
                     /db_xref="CDD:380976"
     Site            order(59..61,78,99..100,102..106,118..122,124,133..134,
                     158..159,161..162,165..166)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:380976"
     Site            order(59..61,102..103,118..122,124,158,162,166)
                     /site_type="other"
                     /note="putative SAM binding site"
                     /db_xref="CDD:380976"
     Region          403..865
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          414..434
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(419,421,423,425..426,429..430,433,446,448,452..453,
                     456..457,461,480,482,484,486..487,490..491)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          441..462
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          475..491
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          529..549
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(534,536,538,540..541,544..545,548,583,585,589..590,
                     593..594,597,610,612,614,616..617,620..621,624)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          578..598
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          605..625
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          668..688
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275370"
     Region          696..716
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          732..752
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(737,739,741,743..744,747..748,751,765,767,771..772,
                     775..776,779,793,795,797,799..800,803..804,807)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          760..780
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          788..808
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          816..836
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          844..864
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          872..893
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..1181
                     /gene="PRDM15"
                     /coded_by="XM_054084698.1:82..3627"
                     /db_xref="GeneID:104059232"
ORIGIN      
        1 mdedgseeiv fiwcedcrqy hdsecpelgp vvtvkdsfvl srarsslpsn leirqledgt
       61 egvfaltqlv krtqfgpfes krvaklekes vfplkvfqkd gplvyfdtsn eddcnwmmmv
      121 rpateyehqn ltalqhdndi yfttsrdipp gtelrvwyaa fyakkmekpv lkqvtsvand
      181 mclvvtesdk egnkvsskps savlphkktk ksstpaadpa vnapegsgaa eaessqwtck
      241 vcssvfqepq lltehllthl eqakgapqas qneavaekaa eappedqtvi cesasastes
      301 rrkarrgrkp ktakaeiplv vveeedsaae qvvdvvtevp pegvalpsaa eerimelvlg
      361 kmpsttnsvg svtnrfahhq ntmslkrsli lssrhgirrk likqlgehkr vyqcsicski
      421 fqnssnlsrh irshgdklfk ceecaklfsr keslkqhvsy khsrnevdne yrykcttcek
      481 afriesalef hncrtddktf qcemcfrffs tnsnlskhkk khgdkkface icnkmfyrkd
      541 vmldhqrrhl egvrrvkred fehstenmvr ykkepsgcpv cgkvfscrsn mnkhllthgd
      601 kkytceicgr kffrvdvlrd hihvhfkdia lmddhqreef igkigissee nddnsdesad
      661 sephkysckr cqltfgrgke ylkhimdvhk ekgygcsicn rrfalkatyh ahmvihrenl
      721 pdpnvqkyih pceicgrifn signlerhkl ihtgvkshac eqcgksfark dmlkehmrvh
      781 dnireylcae cgkgmktkha lrhhmklhkg ikeyeckech rkfaqkvnml khykrhtgik
      841 dfmcelcgkt fserntmeth klihtvgkqw tcsvcdkkyv tdymlqkhiq lthdkveaqs
      901 cqlcgtkvst rasmsrhmrr khpeilsvri gdlehlpett tidassigiv rpelaldqge
      961 lpegkqqtka pkrgqkrkqk sgeeeeeaqv pedpafseyt ekeseftgnv gdetnsavqs
     1021 iqqvvvtlgd pnvtapsrsv gltnitvtpi ttaagthftn lqpvavghlt aperqlqldn
     1081 siltvtfdtv sgsamlhnrq ndiqiqpqpe aanpqsvahf inlttlvnsi aplgnqiteq
     1141 hpltwrsvpq tdvlqpqaqp aqqqsgqqqv qteqqqqmys y
//
LOCUS       XP_053940681            1181 aa            linear   VRT 09-MAR-2023
DEFINITION  PR domain zinc finger protein 15 isoform X1 [Cuculus canorus].
ACCESSION   XP_053940681
VERSION     XP_053940681.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084706.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1181
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1181
                     /product="PR domain zinc finger protein 15 isoform X1"
                     /calculated_mol_wt=134009
     Region          <12..37
                     /region_name="zf_PR_Knuckle"
                     /note="PR zinc knuckle motif; pfam18445"
                     /db_xref="CDD:375871"
     Region          41..166
                     /region_name="PR-SET_PRDM15"
                     /note="PR-SET domain found in PR domain zinc finger
                     protein 15 (PRDM15) and similar proteins; cd19199"
                     /db_xref="CDD:380976"
     Site            order(59..61,78,99..100,102..106,118..122,124,133..134,
                     158..159,161..162,165..166)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:380976"
     Site            order(59..61,102..103,118..122,124,158,162,166)
                     /site_type="other"
                     /note="putative SAM binding site"
                     /db_xref="CDD:380976"
     Region          403..865
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          414..434
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(419,421,423,425..426,429..430,433,446,448,452..453,
                     456..457,461,480,482,484,486..487,490..491)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          441..462
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          475..491
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          529..549
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(534,536,538,540..541,544..545,548,583,585,589..590,
                     593..594,597,610,612,614,616..617,620..621,624)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          578..598
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          605..625
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          668..688
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275370"
     Region          696..716
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          732..752
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(737,739,741,743..744,747..748,751,765,767,771..772,
                     775..776,779,793,795,797,799..800,803..804,807)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          760..780
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          788..808
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          816..836
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          844..864
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          872..893
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..1181
                     /gene="PRDM15"
                     /coded_by="XM_054084706.1:32..3577"
                     /db_xref="GeneID:104059232"
ORIGIN      
        1 mdedgseeiv fiwcedcrqy hdsecpelgp vvtvkdsfvl srarsslpsn leirqledgt
       61 egvfaltqlv krtqfgpfes krvaklekes vfplkvfqkd gplvyfdtsn eddcnwmmmv
      121 rpateyehqn ltalqhdndi yfttsrdipp gtelrvwyaa fyakkmekpv lkqvtsvand
      181 mclvvtesdk egnkvsskps savlphkktk ksstpaadpa vnapegsgaa eaessqwtck
      241 vcssvfqepq lltehllthl eqakgapqas qneavaekaa eappedqtvi cesasastes
      301 rrkarrgrkp ktakaeiplv vveeedsaae qvvdvvtevp pegvalpsaa eerimelvlg
      361 kmpsttnsvg svtnrfahhq ntmslkrsli lssrhgirrk likqlgehkr vyqcsicski
      421 fqnssnlsrh irshgdklfk ceecaklfsr keslkqhvsy khsrnevdne yrykcttcek
      481 afriesalef hncrtddktf qcemcfrffs tnsnlskhkk khgdkkface icnkmfyrkd
      541 vmldhqrrhl egvrrvkred fehstenmvr ykkepsgcpv cgkvfscrsn mnkhllthgd
      601 kkytceicgr kffrvdvlrd hihvhfkdia lmddhqreef igkigissee nddnsdesad
      661 sephkysckr cqltfgrgke ylkhimdvhk ekgygcsicn rrfalkatyh ahmvihrenl
      721 pdpnvqkyih pceicgrifn signlerhkl ihtgvkshac eqcgksfark dmlkehmrvh
      781 dnireylcae cgkgmktkha lrhhmklhkg ikeyeckech rkfaqkvnml khykrhtgik
      841 dfmcelcgkt fserntmeth klihtvgkqw tcsvcdkkyv tdymlqkhiq lthdkveaqs
      901 cqlcgtkvst rasmsrhmrr khpeilsvri gdlehlpett tidassigiv rpelaldqge
      961 lpegkqqtka pkrgqkrkqk sgeeeeeaqv pedpafseyt ekeseftgnv gdetnsavqs
     1021 iqqvvvtlgd pnvtapsrsv gltnitvtpi ttaagthftn lqpvavghlt aperqlqldn
     1081 siltvtfdtv sgsamlhnrq ndiqiqpqpe aanpqsvahf inlttlvnsi aplgnqiteq
     1141 hpltwrsvpq tdvlqpqaqp aqqqsgqqqv qteqqqqmys y
//
LOCUS       XP_053940692            1180 aa            linear   VRT 09-MAR-2023
DEFINITION  PR domain zinc finger protein 15 isoform X2 [Cuculus canorus].
ACCESSION   XP_053940692
VERSION     XP_053940692.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084717.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1180
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1180
                     /product="PR domain zinc finger protein 15 isoform X2"
                     /calculated_mol_wt=133867
     Region          <12..37
                     /region_name="zf_PR_Knuckle"
                     /note="PR zinc knuckle motif; pfam18445"
                     /db_xref="CDD:375871"
     Region          41..166
                     /region_name="PR-SET_PRDM15"
                     /note="PR-SET domain found in PR domain zinc finger
                     protein 15 (PRDM15) and similar proteins; cd19199"
                     /db_xref="CDD:380976"
     Site            order(59..61,78,99..100,102..106,118..122,124,133..134,
                     158..159,161..162,165..166)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:380976"
     Site            order(59..61,102..103,118..122,124,158,162,166)
                     /site_type="other"
                     /note="putative SAM binding site"
                     /db_xref="CDD:380976"
     Region          402..864
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          413..433
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(418,420,422,424..425,428..429,432,445,447,451..452,
                     455..456,460,479,481,483,485..486,489..490)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          440..461
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          474..490
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          528..548
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(533,535,537,539..540,543..544,547,582,584,588..589,
                     592..593,596,609,611,613,615..616,619..620,623)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          577..597
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          604..624
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          667..687
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275370"
     Region          695..715
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          731..751
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(736,738,740,742..743,746..747,750,764,766,770..771,
                     774..775,778,792,794,796,798..799,802..803,806)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          759..779
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          787..807
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          815..835
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          843..863
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          871..892
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..1180
                     /gene="PRDM15"
                     /coded_by="XM_054084717.1:82..3624"
                     /db_xref="GeneID:104059232"
ORIGIN      
        1 mdedgseeiv fiwcedcrqy hdsecpelgp vvtvkdsfvl srarsslpsn leirqledgt
       61 egvfaltqlv krtqfgpfes krvaklekes vfplkvfqkd gplvyfdtsn eddcnwmmmv
      121 rpateyehqn ltalqhdndi yfttsrdipp gtelrvwyaa fyakkmekpv lkqvtsvand
      181 mclvvtesdk egnkvsskps savlphkktk ksstpaadpa vnapegsgaa eaessqwtck
      241 vcssvfqepq lltehllthl eqakgapqas qneavaekaa eappedqtvi cesasastes
      301 rrkarrgrkp ktakaeiplv vveeedsaae qvvdvvtevp pegvalpsaa eerimelvlg
      361 kmpsttnsvg svtkfahhqn tmslkrslil ssrhgirrkl ikqlgehkrv yqcsicskif
      421 qnssnlsrhi rshgdklfkc eecaklfsrk eslkqhvsyk hsrnevdney rykcttceka
      481 friesalefh ncrtddktfq cemcfrffst nsnlskhkkk hgdkkfacei cnkmfyrkdv
      541 mldhqrrhle gvrrvkredf ehstenmvry kkepsgcpvc gkvfscrsnm nkhllthgdk
      601 kytceicgrk ffrvdvlrdh ihvhfkdial mddhqreefi gkigisseen ddnsdesads
      661 ephkysckrc qltfgrgkey lkhimdvhke kgygcsicnr rfalkatyha hmvihrenlp
      721 dpnvqkyihp ceicgrifns ignlerhkli htgvkshace qcgksfarkd mlkehmrvhd
      781 nireylcaec gkgmktkhal rhhmklhkgi keyeckechr kfaqkvnmlk hykrhtgikd
      841 fmcelcgktf serntmethk lihtvgkqwt csvcdkkyvt dymlqkhiql thdkveaqsc
      901 qlcgtkvstr asmsrhmrrk hpeilsvrig dlehlpettt idassigivr pelaldqgel
      961 pegkqqtkap krgqkrkqks geeeeeaqvp edpafseyte keseftgnvg detnsavqsi
     1021 qqvvvtlgdp nvtapsrsvg ltnitvtpit taagthftnl qpvavghlta perqlqldns
     1081 iltvtfdtvs gsamlhnrqn diqiqpqpea anpqsvahfi nlttlvnsia plgnqiteqh
     1141 pltwrsvpqt dvlqpqaqpa qqqsgqqqvq teqqqqmysy
//
LOCUS       XP_053940702            1180 aa            linear   VRT 09-MAR-2023
DEFINITION  PR domain zinc finger protein 15 isoform X3 [Cuculus canorus].
ACCESSION   XP_053940702
VERSION     XP_053940702.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084727.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1180
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1180
                     /product="PR domain zinc finger protein 15 isoform X3"
                     /calculated_mol_wt=133910
     Region          <12..37
                     /region_name="zf_PR_Knuckle"
                     /note="PR zinc knuckle motif; pfam18445"
                     /db_xref="CDD:375871"
     Region          41..166
                     /region_name="PR-SET_PRDM15"
                     /note="PR-SET domain found in PR domain zinc finger
                     protein 15 (PRDM15) and similar proteins; cd19199"
                     /db_xref="CDD:380976"
     Site            order(59..61,78,99..100,102..106,118..122,124,133..134,
                     158..159,161..162,165..166)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:380976"
     Site            order(59..61,102..103,118..122,124,158,162,166)
                     /site_type="other"
                     /note="putative SAM binding site"
                     /db_xref="CDD:380976"
     Region          403..879
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          414..434
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(419,421,423,425..426,429..430,433,446,448,452..453,
                     456..457,461,480,482,484,486..487,490..491)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          441..462
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          475..491
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          529..549
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(534,536,538,540..541,544..545,548,583,585,589..590,
                     593..594,597,610,612,614,616..617,620..621,624)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          578..598
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          605..625
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          668..688
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275370"
     Region          696..716
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          732..752
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(737,739,741,743..744,747..748,751,765,767,771..772,
                     775..776,779,793,795,797,799..800,803..804,807)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          760..780
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          788..808
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          816..836
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          844..864
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          871..892
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..1180
                     /gene="PRDM15"
                     /coded_by="XM_054084727.1:82..3624"
                     /db_xref="GeneID:104059232"
ORIGIN      
        1 mdedgseeiv fiwcedcrqy hdsecpelgp vvtvkdsfvl srarsslpsn leirqledgt
       61 egvfaltqlv krtqfgpfes krvaklekes vfplkvfqkd gplvyfdtsn eddcnwmmmv
      121 rpateyehqn ltalqhdndi yfttsrdipp gtelrvwyaa fyakkmekpv lkqvtsvand
      181 mclvvtesdk egnkvsskps savlphkktk ksstpaadpa vnapegsgaa eaessqwtck
      241 vcssvfqepq lltehllthl eqakgapqas qneavaekaa eappedqtvi cesasastes
      301 rrkarrgrkp ktakaeiplv vveeedsaae qvvdvvtevp pegvalpsaa eerimelvlg
      361 kmpsttnsvg svtnrfahhq ntmslkrsli lssrhgirrk likqlgehkr vyqcsicski
      421 fqnssnlsrh irshgdklfk ceecaklfsr keslkqhvsy khsrnevdne yrykcttcek
      481 afriesalef hncrtddktf qcemcfrffs tnsnlskhkk khgdkkface icnkmfyrkd
      541 vmldhqrrhl egvrrvkred fehstenmvr ykkepsgcpv cgkvfscrsn mnkhllthgd
      601 kkytceicgr kffrvdvlrd hihvhfkdia lmddhqreef igkigissee nddnsdesad
      661 sephkysckr cqltfgrgke ylkhimdvhk ekgygcsicn rrfalkatyh ahmvihrenl
      721 pdpnvqkyih pceicgrifn signlerhkl ihtgvkshac eqcgksfark dmlkehmrvh
      781 dnireylcae cgkgmktkha lrhhmklhkg ikeyeckech rkfaqkvnml khykrhtgik
      841 dfmcelcgkt fserntmeth klihtgkqwt csvcdkkyvt dymlqkhiql thdkveaqsc
      901 qlcgtkvstr asmsrhmrrk hpeilsvrig dlehlpettt idassigivr pelaldqgel
      961 pegkqqtkap krgqkrkqks geeeeeaqvp edpafseyte keseftgnvg detnsavqsi
     1021 qqvvvtlgdp nvtapsrsvg ltnitvtpit taagthftnl qpvavghlta perqlqldns
     1081 iltvtfdtvs gsamlhnrqn diqiqpqpea anpqsvahfi nlttlvnsia plgnqiteqh
     1141 pltwrsvpqt dvlqpqaqpa qqqsgqqqvq teqqqqmysy
//
LOCUS       XP_053940711            1162 aa            linear   VRT 09-MAR-2023
DEFINITION  PR domain zinc finger protein 15 isoform X4 [Cuculus canorus].
ACCESSION   XP_053940711
VERSION     XP_053940711.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084736.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1162
                     /product="PR domain zinc finger protein 15 isoform X4"
                     /calculated_mol_wt=131800
     Region          <12..37
                     /region_name="zf_PR_Knuckle"
                     /note="PR zinc knuckle motif; pfam18445"
                     /db_xref="CDD:375871"
     Region          41..166
                     /region_name="PR-SET_PRDM15"
                     /note="PR-SET domain found in PR domain zinc finger
                     protein 15 (PRDM15) and similar proteins; cd19199"
                     /db_xref="CDD:380976"
     Site            order(59..61,78,99..100,102..106,118..122,124,133..134,
                     158..159,161..162,165..166)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:380976"
     Site            order(59..61,102..103,118..122,124,158,162,166)
                     /site_type="other"
                     /note="putative SAM binding site"
                     /db_xref="CDD:380976"
     Region          363..846
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          395..415
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(400,402,404,406..407,410..411,414,427,429,433..434,
                     437..438,442,461,463,465,467..468,471..472)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          422..443
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          456..472
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          510..530
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(515,517,519,521..522,525..526,529,564,566,570..571,
                     574..575,578,591,593,595,597..598,601..602,605)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          559..579
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          586..606
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          649..669
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275370"
     Region          677..697
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          713..733
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(718,720,722,724..725,728..729,732,746,748,752..753,
                     756..757,760,774,776,778,780..781,784..785,788)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          741..761
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          769..789
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          797..817
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          825..845
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          853..874
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..1162
                     /gene="PRDM15"
                     /coded_by="XM_054084736.1:82..3570"
                     /db_xref="GeneID:104059232"
ORIGIN      
        1 mdedgseeiv fiwcedcrqy hdsecpelgp vvtvkdsfvl srarsslpsn leirqledgt
       61 egvfaltqlv krtqfgpfes krvaklekes vfplkvfqkd gplvyfdtsn eddcnwmmmv
      121 rpateyehqn ltalqhdndi yfttsrdipp gtelrvwyaa fyakkmekpv lkqvtsvand
      181 mclvvtesdk egnkvsskps savlphkktk ksstpaadpa vnapegsgaa eaessqwtck
      241 vcssvfqepq lltehllthl eqakgapqas qneavaekaa eappedqtvi cesasastes
      301 rrkarrgrkp ktakaeiplv vveeedsaae qvvdvvtevp pegvalpsaa eerimelvlg
      361 kmpsttnsvg svtnrhgirr klikqlgehk rvyqcsicsk ifqnssnlsr hirshgdklf
      421 kceecaklfs rkeslkqhvs ykhsrnevdn eyrykcttce kafriesale fhncrtddkt
      481 fqcemcfrff stnsnlskhk kkhgdkkfac eicnkmfyrk dvmldhqrrh legvrrvkre
      541 dfehstenmv rykkepsgcp vcgkvfscrs nmnkhllthg dkkytceicg rkffrvdvlr
      601 dhihvhfkdi almddhqree figkigisse enddnsdesa dsephkysck rcqltfgrgk
      661 eylkhimdvh kekgygcsic nrrfalkaty hahmvihren lpdpnvqkyi hpceicgrif
      721 nsignlerhk lihtgvksha ceqcgksfar kdmlkehmrv hdnireylca ecgkgmktkh
      781 alrhhmklhk gikeyeckec hrkfaqkvnm lkhykrhtgi kdfmcelcgk tfserntmet
      841 hklihtvgkq wtcsvcdkky vtdymlqkhi qlthdkveaq scqlcgtkvs trasmsrhmr
      901 rkhpeilsvr igdlehlpet ttidassigi vrpelaldqg elpegkqqtk apkrgqkrkq
      961 ksgeeeeeaq vpedpafsey tekeseftgn vgdetnsavq siqqvvvtlg dpnvtapsrs
     1021 vgltnitvtp ittaagthft nlqpvavghl taperqlqld nsiltvtfdt vsgsamlhnr
     1081 qndiqiqpqp eaanpqsvah finlttlvns iaplgnqite qhpltwrsvp qtdvlqpqaq
     1141 paqqqsgqqq vqteqqqqmy sy
//
LOCUS       XP_053940718            1021 aa            linear   VRT 09-MAR-2023
DEFINITION  PR domain zinc finger protein 15 isoform X5 [Cuculus canorus].
ACCESSION   XP_053940718
VERSION     XP_053940718.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084743.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1021
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1021
                     /product="PR domain zinc finger protein 15 isoform X5"
                     /calculated_mol_wt=115446
     Region          243..705
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          254..274
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(259,261,263,265..266,269..270,273,286,288,292..293,
                     296..297,301,320,322,324,326..327,330..331)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          281..302
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          315..331
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          342..361
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          369..389
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(374,376,378,380..381,384..385,388,423,425,429..430,
                     433..434,437,450,452,454,456..457,460..461,464)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          418..438
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          445..465
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          508..528
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275370"
     Region          536..556
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          572..592
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(577,579,581,583..584,587..588,591,605,607,611..612,
                     615..616,619,633,635,637,639..640,643..644,647)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          600..620
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          628..648
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          656..676
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          684..704
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          712..733
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..1021
                     /gene="PRDM15"
                     /coded_by="XM_054084743.1:124..3189"
                     /db_xref="GeneID:104059232"
ORIGIN      
        1 miftspppgt shqelscecd mclvvtesdk egnkvsskps savlphkktk ksstpaadpa
       61 vnapegsgaa eaessqwtck vcssvfqepq lltehllthl eqakgapqas qneavaekaa
      121 eappedqtvi cesasastes rrkarrgrkp ktakaeiplv vveeedsaae qvvdvvtevp
      181 pegvalpsaa eerimelvlg kmpsttnsvg svtnrfahhq ntmslkrsli lssrhgirrk
      241 likqlgehkr vyqcsicski fqnssnlsrh irshgdklfk ceecaklfsr keslkqhvsy
      301 khsrnevdne yrykcttcek afriesalef hncrtddktf qcemcfrffs tnsnlskhkk
      361 khgdkkface icnkmfyrkd vmldhqrrhl egvrrvkred fehstenmvr ykkepsgcpv
      421 cgkvfscrsn mnkhllthgd kkytceicgr kffrvdvlrd hihvhfkdia lmddhqreef
      481 igkigissee nddnsdesad sephkysckr cqltfgrgke ylkhimdvhk ekgygcsicn
      541 rrfalkatyh ahmvihrenl pdpnvqkyih pceicgrifn signlerhkl ihtgvkshac
      601 eqcgksfark dmlkehmrvh dnireylcae cgkgmktkha lrhhmklhkg ikeyeckech
      661 rkfaqkvnml khykrhtgik dfmcelcgkt fserntmeth klihtvgkqw tcsvcdkkyv
      721 tdymlqkhiq lthdkveaqs cqlcgtkvst rasmsrhmrr khpeilsvri gdlehlpett
      781 tidassigiv rpelaldqge lpegkqqtka pkrgqkrkqk sgeeeeeaqv pedpafseyt
      841 ekeseftgnv gdetnsavqs iqqvvvtlgd pnvtapsrsv gltnitvtpi ttaagthftn
      901 lqpvavghlt aperqlqldn siltvtfdtv sgsamlhnrq ndiqiqpqpe aanpqsvahf
      961 inlttlvnsi aplgnqiteq hpltwrsvpq tdvlqpqaqp aqqqsgqqqv qteqqqqmys
     1021 y
//
LOCUS       XP_053940728            1892 aa            linear   VRT 09-MAR-2023
DEFINITION  plexin-A4 [Cuculus canorus].
ACCESSION   XP_053940728
VERSION     XP_053940728.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084753.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1892
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1892
                     /product="plexin-A4"
                     /calculated_mol_wt=212264
     Region          36..508
                     /region_name="Sema_plexin_A4"
                     /note="The Sema domain, a protein interacting module, of
                     Plexin A4; cd11274"
                     /db_xref="CDD:200535"
     Site            order(91,93..94,153,190..192,218..220,227..229,383,386,
                     388,391..395,405..406,408)
                     /site_type="other"
                     /note="putative Semaphorin binding site [polypeptide
                     binding]"
                     /db_xref="CDD:200535"
     Region          507..545
                     /region_name="PSI"
                     /note="domain found in Plexins, Semaphorins and Integrins;
                     smart00423"
                     /db_xref="CDD:214655"
     Region          561..651
                     /region_name="TIG_plexin"
                     /note="TIG domain; pfam17960"
                     /db_xref="CDD:465588"
     Region          652..699
                     /region_name="PSI"
                     /note="Plexin repeat; pfam01437"
                     /db_xref="CDD:396154"
     Region          705..799
                     /region_name="TIG_2"
                     /note="TIG domain found in plexin; pfam18020"
                     /db_xref="CDD:465619"
     Region          801..853
                     /region_name="PSI"
                     /note="Plexin repeat; pfam01437"
                     /db_xref="CDD:396154"
     Region          855..950
                     /region_name="IPT_plexin_repeat1"
                     /note="First repeat of the IPT domain of Plexins and Cell
                     Surface Receptors (PCSR) . Plexins are involved in the
                     regulation of cell proliferation and of cellular adhesion
                     and repulsion receptors. In general, there are three
                     copies of the IPT domain present...; cd01180"
                     /db_xref="CDD:238585"
     Region          952..1036
                     /region_name="IPT_plexin_repeat2"
                     /note="Second repeat of the IPT domain of Plexins and Cell
                     Surface Receptors (PCSR) . Plexins are involved in the
                     regulation of cell proliferation and of cellular adhesion
                     and repulsion receptors. In general, there are three
                     copies of the IPT domain present...; cd01179"
                     /db_xref="CDD:238584"
     Region          1038..1138
                     /region_name="IPT_plexin_repeat3"
                     /note="Third repeat of the IPT domain of Plexins and Cell
                     Surface Receptors (PCSR) . Plexins are involved in the
                     regulation of cell proliferation and of cellular adhesion
                     and repulsion receptors. In general, there are three
                     copies of the IPT domain present...; cd01181"
                     /db_xref="CDD:238586"
     Region          1140..1220
                     /region_name="IPT_PCSR"
                     /note="IPT domain of Plexins and Cell Surface Receptors
                     (PCSR) and related proteins . This subgroup contains IPT
                     domains of plexins, receptors, like the
                     plasminogen-related growth factor receptors, the
                     hepatocyte growth factor-scatter factors, and the...;
                     cd00603"
                     /db_xref="CDD:238337"
     Region          1309..1857
                     /region_name="Plexin_cytopl"
                     /note="Plexin cytoplasmic RasGAP domain; pfam08337"
                     /db_xref="CDD:462434"
     CDS             1..1892
                     /gene="PLXNA4"
                     /coded_by="XM_054084753.1:182..5860"
                     /db_xref="GeneID:104061448"
ORIGIN      
        1 mspamwkwtc lvshlllstt vsplgrqqpl hpkrpfitft gdqaegnfnh lvvdertghi
       61 ylgavnriyk lssdlkvlvt hqtgpdednp kcypprivqt cnepltltnn inkmllidyk
      121 enrliacgsl yqgickllrl ddlfklgepf hkkehylsgv nesgsvfgvi vsysnmddkl
      181 fiatavdgkp eyfptissrk ltknseadgm fayvfhdefv asmikipsdt ftiipdfdiy
      241 yiygfssgnf vyfltlqpem isppgsttke qvytsklvrl ckedtafnsy vevpigcekn
      301 gveyrllqaa ylskagaila sslgvgpedd ilftvfskgq krkmksldes alcifvlkki
      361 ndrikdrlqs cyrgegtldl awlkvkdipc ssalltiddn fcgldmnapl gvssmvrglp
      421 iftedgdrmt sviayvyknh slafvgtktg klkkirvdgt skntleyeiv qvadtgpilr
      481 dmafsmdheh lylmsekqlt rvpvescsqy etcseclgsg dphcgwcvlh ntctrkerce
      541 rsseprrfas emkqcvrltv hpnnisvsqy nvllvletyn vpelsagvnc tfedlsemdg
      601 lvvgsqiqci spaakevpqi itengdhhiv qlqlksketg mtfastsfvf yncsvhnscl
      661 scvespyqch wckyrhvcth dpsscsfqeg rvklpedcpq llqaekilvp vevikpitlk
      721 aknlpqpqsg qrgyecilni qgneqrvpal rfnsssvqcq ntsysyegme inslpveltv
      781 vwngnfnidn paqnkvhlyk cgamrdscgl clkadpdfec gwcegqnqct lkqhcpaqds
      841 qwlelsstkg kctnpkitdi npvtgpregg tkvtirgenl glefrdiash vkvagveckp
      901 lvegyipaeq ivcemgeakp sqhagfveic vaecrpefma rssqlyyfmt ltlsdlkpkr
      961 gpvsggtqvt itgnnlnags nvivnfgrqp clfyrrstkh ivcnttasde gfekvkvsvr
     1021 vdkakihqel qyeyvedpti lriepewsif sgntpiavwg thldliqnpq irakhggkeh
     1081 vnncevqnst emtcqapala vdpnhqsela erpeefgfil dnvqslliln ktnftyypnp
     1141 ifevfnpsgi lelkpgspii lkgknlippv aggnaklnyt vlvgekpcav tvsdvqllce
     1201 spnligrhkv marvggmefs pgmvyispds plslpaivsi avagglliif ivavliaykr
     1261 ksresdltlk rlqmqmdnle srvaleckea faelqtdihe ltsdldgagi pfldyrtytm
     1321 rvlfpgiedh pvlrdlevpg yrqervekgl klfaqlinnk vfllsfirtl esqrsfsmrd
     1381 rgnvaslimt vlqskleyat dvlkqlladl idknlesknh pklllrrtes vaekmltnwf
     1441 tfllykflke cageplfslf caikqqmekg pidsitgear yslsedklir qqidyktlvl
     1501 scvnpdnvns peipvkilnc dtitqvkeki ldaifknvpc shrpkaadmd lewrqasgar
     1561 milqdeditt kiendwkrln tlahyqvpdg svvalvskqv taynavnnst vsrtsaskye
     1621 nmirytgspd slrsrtpmit pdlesgvkmw hlvknhehgd qkegdrgskm vseiyltrll
     1681 atkgtlqkfv ddlfetifst ahrgsalpla ikymfdflde qadkhnihdp hvrhtwksnc
     1741 lplrfwvnmi knpqfvfdih knsitdacls vvaqtfmdsc stsehrlgkd spsnkllyak
     1801 dipsyknwve ryysdiakmp aisdqdmnay laeqsrmhmn efntmsalse iysyvgkyse
     1861 eilgaldqdd qagkqklayk leqvitlmsi ds
//
LOCUS       XP_009554333             194 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase isozyme L3 [Cuculus canorus].
ACCESSION   XP_009554333
VERSION     XP_009554333.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556038.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..194
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..194
                     /product="ubiquitin carboxyl-terminal hydrolase isozyme
                     L3"
                     /calculated_mol_wt=21870
     Region          1..191
                     /region_name="Peptidase_C12_UCH_L1_L3"
                     /note="Cysteine peptidase C12 containing ubiquitin
                     carboxyl-terminal hydrolase (UCH) families L1 and L3;
                     cd09616"
                     /db_xref="CDD:187737"
     Site            order(53,59,133,148)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:187737"
     Site            order(53,57,59,132..133)
                     /site_type="inhibition"
                     /note="inhibitor binding site [chemical binding]"
                     /db_xref="CDD:187737"
     CDS             1..194
                     /gene="UCHL3"
                     /coded_by="XM_009556038.2:55..639"
                     /db_xref="GeneID:104054963"
ORIGIN      
        1 mepellsmvp rpvcavlllf pitekyetfr teeeerikak gqdvkssvyf mkqtinnacg
       61 tiglihaian nrdkmnfetn sslkkfleds lsmtpeerak yletyeairv thessahegq
      121 teapsidekv dlhfialvnv gghlyeldgr kpfpinhget sddsfledai evckkfmerd
      181 peelrfnaia lsaa
//
LOCUS       XP_053940763             649 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane 9 superfamily member 2 [Cuculus canorus].
ACCESSION   XP_053940763
VERSION     XP_053940763.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084788.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..649
                     /product="transmembrane 9 superfamily member 2"
                     /calculated_mol_wt=73953
     Region          61..605
                     /region_name="EMP70"
                     /note="Endomembrane protein 70; pfam02990"
                     /db_xref="CDD:460774"
     CDS             1..649
                     /gene="TM9SF2"
                     /coded_by="XM_054084788.1:139..2088"
                     /db_xref="GeneID:104057312"
ORIGIN      
        1 malrrlliaa vlaaaappaa afylpglapv nfceegnekp ecksgielfv nrldsvesvl
       61 pyeytafdfc qaegkkrpse nlgqvlfger iepspyrftf nkketcksvc tktydttkpe
      121 dkqkldflkk smllnyqhhw ivdnmpvtwc ydvedgqrfc npgfpigcyi tedgrpkdac
      181 vinsefhekd tfyifnhvdi kiyyhvvene algarlvaak lepksykhth pdnpdcsgvp
      241 mdisnkange vkiaytysvs fqeeknirwa srwdyilesm phthiqwfsi mnslvivlfl
      301 sgmvamimlr tlhkdiaryn qmdstedaqe efgwklvhgd ifrpprkgml lsvflgsgtq
      361 ilimtfvtlf faclgflspa nrgalmtcav vlwvllgtpa gyvaarfyks fggekwktnv
      421 lltsflcpgi vfadffimnl ilwgegssaa ipfgtlvail alwfcisvpl tfigayfgfk
      481 knaiehpvrt nqiprqipeq sfytkplpgi imggilpfgc ifiqlffiln siwshqmyym
      541 fgflflvfii lvitcseati llcyfhlcae dyhwqwrsfl tsgftavyfl iyaihyffsk
      601 lqitgtasti lyfgytmimv lifflftgti gffacfwfvt kiysvvkvd
//
LOCUS       XP_053940776              59 aa            linear   VRT 09-MAR-2023
DEFINITION  single-pass membrane and coiled-coil domain-containing protein 4
            [Cuculus canorus].
ACCESSION   XP_053940776
VERSION     XP_053940776.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084801.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..59
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..59
                     /product="single-pass membrane and coiled-coil
                     domain-containing protein 4"
                     /calculated_mol_wt=6636
     Region          1..55
                     /region_name="DUF4519"
                     /note="Domain of unknown function (DUF4519); pfam15012"
                     /db_xref="CDD:464444"
     CDS             1..59
                     /gene="SMCO4"
                     /coded_by="XM_054084801.1:306..485"
                     /db_xref="GeneID:104064093"
ORIGIN      
        1 mrqlrgkpkk etskdkkerk qamqearqqi ttvvlptlav vvllivvfvy vatrpntte
//
LOCUS       XP_053940784              59 aa            linear   VRT 09-MAR-2023
DEFINITION  single-pass membrane and coiled-coil domain-containing protein 4
            [Cuculus canorus].
ACCESSION   XP_053940784
VERSION     XP_053940784.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084809.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..59
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..59
                     /product="single-pass membrane and coiled-coil
                     domain-containing protein 4"
                     /calculated_mol_wt=6636
     Region          1..55
                     /region_name="DUF4519"
                     /note="Domain of unknown function (DUF4519); pfam15012"
                     /db_xref="CDD:464444"
     CDS             1..59
                     /gene="SMCO4"
                     /coded_by="XM_054084809.1:651..830"
                     /db_xref="GeneID:104064093"
ORIGIN      
        1 mrqlrgkpkk etskdkkerk qamqearqqi ttvvlptlav vvllivvfvy vatrpntte
//
LOCUS       XP_053940793              59 aa            linear   VRT 09-MAR-2023
DEFINITION  single-pass membrane and coiled-coil domain-containing protein 4
            [Cuculus canorus].
ACCESSION   XP_053940793
VERSION     XP_053940793.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084818.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..59
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..59
                     /product="single-pass membrane and coiled-coil
                     domain-containing protein 4"
                     /calculated_mol_wt=6636
     Region          1..55
                     /region_name="DUF4519"
                     /note="Domain of unknown function (DUF4519); pfam15012"
                     /db_xref="CDD:464444"
     CDS             1..59
                     /gene="SMCO4"
                     /coded_by="XM_054084818.1:229..408"
                     /db_xref="GeneID:104064093"
ORIGIN      
        1 mrqlrgkpkk etskdkkerk qamqearqqi ttvvlptlav vvllivvfvy vatrpntte
//
LOCUS       XP_053940798              59 aa            linear   VRT 09-MAR-2023
DEFINITION  single-pass membrane and coiled-coil domain-containing protein 4
            [Cuculus canorus].
ACCESSION   XP_053940798
VERSION     XP_053940798.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084823.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..59
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..59
                     /product="single-pass membrane and coiled-coil
                     domain-containing protein 4"
                     /calculated_mol_wt=6636
     Region          1..55
                     /region_name="DUF4519"
                     /note="Domain of unknown function (DUF4519); pfam15012"
                     /db_xref="CDD:464444"
     CDS             1..59
                     /gene="SMCO4"
                     /coded_by="XM_054084823.1:476..655"
                     /db_xref="GeneID:104064093"
ORIGIN      
        1 mrqlrgkpkk etskdkkerk qamqearqqi ttvvlptlav vvllivvfvy vatrpntte
//
LOCUS       XP_053940806              59 aa            linear   VRT 09-MAR-2023
DEFINITION  single-pass membrane and coiled-coil domain-containing protein 4
            [Cuculus canorus].
ACCESSION   XP_053940806
VERSION     XP_053940806.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084831.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..59
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..59
                     /product="single-pass membrane and coiled-coil
                     domain-containing protein 4"
                     /calculated_mol_wt=6636
     Region          1..55
                     /region_name="DUF4519"
                     /note="Domain of unknown function (DUF4519); pfam15012"
                     /db_xref="CDD:464444"
     CDS             1..59
                     /gene="SMCO4"
                     /coded_by="XM_054084831.1:217..396"
                     /db_xref="GeneID:104064093"
ORIGIN      
        1 mrqlrgkpkk etskdkkerk qamqearqqi ttvvlptlav vvllivvfvy vatrpntte
//
LOCUS       XP_009556058             314 aa            linear   VRT 09-MAR-2023
DEFINITION  protein chibby homolog 2 [Cuculus canorus].
ACCESSION   XP_009556058
VERSION     XP_009556058.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557763.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556058.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..314
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..314
                     /product="protein chibby homolog 2"
                     /calculated_mol_wt=36576
     CDS             1..314
                     /gene="CBY2"
                     /coded_by="XM_009557763.2:251..1195"
                     /db_xref="GeneID:104056506"
ORIGIN      
        1 maafdptkqn mehiqpkidy viplmklrdd mfvsvdgkwm neiycqppfv shqklfskka
       61 qnewsileen rvlweenhil wienrmlree iralqylqsq nkavqvvdai qqslrkenkp
      121 fpffqemsig fqtssgnkal keaqedhrvl eniqqehktv piiwedkkat ivreenkdas
      181 ldlqkdtnti tdveesnsgp mpqrehgakk kntstsqnki qcapsmqkds eilqtiqdlh
      241 kllhiyaken ylleknedch ilyhvhrsfq keynklkmql navkntvsgi taqmemlete
      301 liaitspmkd kvgn
//
LOCUS       XP_009556184             622 aa            linear   VRT 09-MAR-2023
DEFINITION  cell division cycle protein 16 homolog isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009556184
VERSION     XP_009556184.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557889.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556184.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..622
                     /product="cell division cycle protein 16 homolog isoform
                     X1"
                     /calculated_mol_wt=71810
     Region          15..94
                     /region_name="ANAPC3"
                     /note="Anaphase-promoting complex, cyclosome, subunit 3;
                     pfam12895"
                     /db_xref="CDD:463743"
     Region          36..65
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          70..94
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          275..>440
                     /region_name="Spy"
                     /note="Predicted O-linked N-acetylglucosamine transferase,
                     SPINDLY family [Posttranslational modification, protein
                     turnover, chaperones]; COG3914"
                     /db_xref="CDD:443119"
     Region          298..329
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          336..362
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          367..397
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          373..>522
                     /region_name="TPR"
                     /note="Tetratricopeptide (TPR) repeat [General function
                     prediction only]; COG0457"
                     /db_xref="CDD:440225"
     Region          402..430
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(403,406..407,410..411,413,437,449..450,453..454,
                     456..457,480,483..484,487..488,491)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          435..474
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          479..506
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..622
                     /gene="CDC16"
                     /coded_by="XM_009557889.2:48..1916"
                     /db_xref="GeneID:104056624"
ORIGIN      
        1 mnleglrrrv rhyidqqqyq salfwadkva slsheepqdi ywlaqclylt aqyhraahal
       61 rsrkldklye acrylaarch yaakehqqal dildmeepin krlfekylkd etglkdssdw
      121 emsqssikss icllrgkiyd aldnrtlaty sykealkldv ycfeafdllt shhmltaqee
      181 kelldslpls rqcteeerel lhflfenklk kynkpsetli pesvdglqen ldvvvslaer
      241 hyyncdfkmc ykltsvvmek dpfhanclpv higtlvelnk anelfylshk lvdlypnnpv
      301 swfavgcyyl mvghknehar rylskattle rtygpawiay ghsfaveseh dqamaayfta
      361 aqlmkgchlp mlyigleygl tnnsklaerf fsqalsiape dpfvmhevgv vafqngdwkt
      421 aekwfldale kikaignevt vdkwepllnn lghvcrklkk ydealeyhrq alvlipqnas
      481 tysaigyihs lmgnfesaid yfhtalglrr ddtfsvtmlg hciemyigds dayigtdikd
      541 klrcydfdvh tmkilknims ppwdfiafni erqtvdesgi vtletpqetk sadtsrplee
      601 tfeiemnesd mmletsmsdh st
//
LOCUS       XP_053940852             621 aa            linear   VRT 09-MAR-2023
DEFINITION  cell division cycle protein 16 homolog isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053940852
VERSION     XP_053940852.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084877.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..621
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..621
                     /product="cell division cycle protein 16 homolog isoform
                     X2"
                     /calculated_mol_wt=71682
     Region          17..93
                     /region_name="ANAPC3"
                     /note="Anaphase-promoting complex, cyclosome, subunit 3;
                     pfam12895"
                     /db_xref="CDD:463743"
     Region          35..64
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          69..93
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          274..>439
                     /region_name="Spy"
                     /note="Predicted O-linked N-acetylglucosamine transferase,
                     SPINDLY family [Posttranslational modification, protein
                     turnover, chaperones]; COG3914"
                     /db_xref="CDD:443119"
     Region          297..328
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          335..361
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          366..396
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          372..>521
                     /region_name="TPR"
                     /note="Tetratricopeptide (TPR) repeat [General function
                     prediction only]; COG0457"
                     /db_xref="CDD:440225"
     Region          401..429
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(402,405..406,409..410,412,436,448..449,452..453,
                     455..456,479,482..483,486..487,490)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          434..473
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          478..505
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..621
                     /gene="CDC16"
                     /coded_by="XM_054084877.1:20..1885"
                     /db_xref="GeneID:104056624"
ORIGIN      
        1 mnleglrrrv rhyidqqyqs alfwadkvas lsheepqdiy wlaqclylta qyhraahalr
       61 srkldklyea crylaarchy aakehqqald ildmeepink rlfekylkde tglkdssdwe
      121 msqssikssi cllrgkiyda ldnrtlatys ykealkldvy cfeafdllts hhmltaqeek
      181 elldslplsr qcteeerell hflfenklkk ynkpsetlip esvdglqenl dvvvslaerh
      241 yyncdfkmcy kltsvvmekd pfhanclpvh igtlvelnka nelfylshkl vdlypnnpvs
      301 wfavgcyylm vghkneharr ylskattler tygpawiayg hsfavesehd qamaayftaa
      361 qlmkgchlpm lyigleyglt nnsklaerff sqalsiaped pfvmhevgvv afqngdwkta
      421 ekwfldalek ikaignevtv dkwepllnnl ghvcrklkky dealeyhrqa lvlipqnast
      481 ysaigyihsl mgnfesaidy fhtalglrrd dtfsvtmlgh ciemyigdsd ayigtdikdk
      541 lrcydfdvht mkilknimsp pwdfiafnie rqtvdesgiv tletpqetks adtsrpleet
      601 feiemnesdm mletsmsdhs t
//
LOCUS       XP_053940864             465 aa            linear   VRT 09-MAR-2023
DEFINITION  carbohydrate sulfotransferase 7 [Cuculus canorus].
ACCESSION   XP_053940864
VERSION     XP_053940864.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084889.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..465
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..465
                     /product="carbohydrate sulfotransferase 7"
                     /calculated_mol_wt=52590
     Region          <242..454
                     /region_name="Sulfotransfer_1"
                     /note="Sulfotransferase domain; cl21551"
                     /db_xref="CDD:473908"
     CDS             1..465
                     /gene="CHST7"
                     /coded_by="XM_054084889.1:214..1611"
                     /db_xref="GeneID:128854160"
ORIGIN      
        1 mkgqrrrwrw rgehrrfaav lvlytlllll lvpyaldhga grakdepepl lrrcpsleea
       61 lsewgweqqq pppdeedden eedegggaag ngsaaagkrh iylhatwrtg ssflgelfnq
      121 hpdvfylyep mwhlwqalyp gdalslqgal rdmlralfrc dfsvlhlyaa ppaprdplap
      181 appaaanltt asifgwrtnk vicsaplcpa aprprdhigl vdgaaceesc ppralrelea
      241 ecrkypvvvi kdvrllelsa lmpllrepgl nlrvvqlfrd pravhnsrlk arqallresi
      301 qvlrsrhrae prgrqqqqqq lllppglrgs apqhraeffl ggalevicqa wlrdlllarr
      361 sppwlrrryt qlryedlvre praqlrrllr faglavppal etfvlnmtrg aayssdrpfl
      421 isardareai hawrerlsrq qvrqveaacg eamsilaypl ggdar
//
LOCUS       XP_053940886             780 aa            linear   VRT 09-MAR-2023
DEFINITION  cullin-5 [Cuculus canorus].
ACCESSION   XP_053940886
VERSION     XP_053940886.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084911.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..780
                     /product="cullin-5"
                     /calculated_mol_wt=90811
     Region          19..672
                     /region_name="Cullin"
                     /note="Cullin family; pfam00888"
                     /db_xref="CDD:459983"
     Region          711..772
                     /region_name="Cullin_Nedd8"
                     /note="Cullin protein neddylation domain; pfam10557"
                     /db_xref="CDD:463146"
     CDS             1..780
                     /gene="CUL5"
                     /coded_by="XM_054084911.1:194..2536"
                     /db_xref="GeneID:104055337"
ORIGIN      
        1 matsnllknk gslqfedkwd fmrpivlkll rqesvtkqqw fdlfsdvhav clwddkgpak
       61 ihqalkedil dfikqaqarv lshqddtall kayivewrkf ftqcdilpkp fcqleitlmg
      121 kqgsnkksnv edsivrklml dtwnesifsn iknrlqdsam klvhaerlge afdsqlvigv
      181 resyvnlcsn pedklqiyrd nfekayldst erfyrtqaps ylqqngvqny mkyadaklke
      241 eekralryle trrecnsvea lmeccvnalv tsfketilae cqgmikrnet eklhlmfslm
      301 dkvpngiepm lkdleehivs agladmvaaa etittdseky veqlltlfnr fsklvkeafq
      361 ddprfltard kaykavvnda tifklelplk qkgvglktqp eskcpellan ycdmllrktp
      421 lskkltseei eaklkevllv lkyvqnkdvf mryhkahltr rlildisads eieenmvewl
      481 revgmpadyv nklarmfqdi kvsedlnqaf kemhknnkla lpadsvniki lnagawsrss
      541 ekvfvslpte ledlipevee fykknhsgrk lhwhhlmsng iitfknevgq ydlevttfql
      601 avlfawnqrp rekisfenlk latelpdael rrtlwslvaf pklkrqvlly epqvnspkdf
      661 tegtlfsvnq efsliknakv qkrgkinlig rlqlttermr eeenegivql rilrtqeaii
      721 qimkmrkkit naqlqtelve ilknmflpqk kmikeqiewl iehkyirrde sdintfiyma
//
LOCUS       XP_053940903             951 aa            linear   VRT 09-MAR-2023
DEFINITION  inter-alpha-trypsin inhibitor heavy chain H5 [Cuculus canorus].
ACCESSION   XP_053940903
VERSION     XP_053940903.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084928.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..951
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..951
                     /product="inter-alpha-trypsin inhibitor heavy chain H5"
                     /calculated_mol_wt=106905
     Region          61..171
                     /region_name="VIT"
                     /note="Vault protein inter-alpha-trypsin domain;
                     pfam08487"
                     /db_xref="CDD:462492"
     Region          304..486
                     /region_name="vWA_interalpha_trypsin_inhibitor"
                     /note="vWA_interalpha trypsin inhibitor (ITI): ITI is a
                     glycoprotein composed of three polypeptides- two heavy
                     chains and one light chain (bikunin). Bikunin confers the
                     protease-inhibitor function while the heavy chains are
                     involved in rendering stability to...; cd01461"
                     /db_xref="CDD:238738"
     Site            order(313,315,317,384,419)
                     /site_type="other"
                     /note="metal ion-dependent adhesion site (MIDAS)"
                     /db_xref="CDD:238738"
     Region          725..920
                     /region_name="ITI_HC_C"
                     /note="Inter-alpha-trypsin inhibitor heavy chain
                     C-terminus; pfam06668"
                     /db_xref="CDD:461981"
     CDS             1..951
                     /gene="ITIH5"
                     /coded_by="XM_054084928.1:121..2976"
                     /db_xref="GeneID:104066496"
ORIGIN      
        1 milwlwlcwg fstsaaqpds elmaryleek lmadysimeq varrvprqak flqrletrpr
       61 mseftvksti isryafttvs ctmvnsgsea regvfemqip aaafisnftv iignktyyge
      121 vtgkvkkhss ddkarlkkpp spadrrengy etfkasvfip rkmqakfllh yeellqrrlg
      181 kyeytvsirp qqlvgrlrve vnileksgiv slevpplrns khkgngkvdg dvspppstvv
      241 ghtktlakvt fnptvveqtr iarngilgdf iirydvnrel sigdvqilng yfvhyfaptd
      301 lpplpknvif vldssasmvg tklkqtkeal ftilqdlrpe dhfniigfsn rikvwqqdql
      361 vpvtpnnird akkyihnmsp tggtningal qtgakllndy iaqndldars vsliifltdg
      421 rptvgetqss kilsntkdai rdkfclftig igndvdqkll ermalencgm trlfqededa
      481 ashlkgfyde igtpllsdir vdysednveq vtqnffpnyf ngseiiiagk linhssdslh
      541 vevtasnskk yillktdvai dlpsrndirg ipgleddkgd knyverawsy ltikellnsr
      601 lksdddqekd slmekakama ltynfvtpft vlkmrevglh selpqeefih pstdgigekl
      661 qslqghkapp girkqqdkqr irisktsadg dphfvidfps skfsvcfnid gepgdilrlv
      721 sdhkesgvtv ngqligapap pnghkkhrty fstitilnnk persyleitp rriilddger
      781 lllscdrdav vrssslevsi sansnitvti rdtisfvili hrykkpapyq rnhlgfyisn
      841 skglssdshg llgqflnhev kllqeslnas hqqvgqnqte alkpnptntl kvkgrlipvv
      901 wkqrriyngq qevncwfakn nadklidgsy kdylashpfd tgtsfgmins l
//
LOCUS       XP_009561602             165 aa            linear   VRT 09-MAR-2023
DEFINITION  interferon gamma [Cuculus canorus].
ACCESSION   XP_009561602
VERSION     XP_009561602.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563307.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561602.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..165
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..165
                     /product="interferon gamma"
                     /calculated_mol_wt=18898
     Region          28..154
                     /region_name="IFN-gamma"
                     /note="Interferon gamma; pfam00714"
                     /db_xref="CDD:395581"
     CDS             1..165
                     /gene="IFNG"
                     /coded_by="XM_009563307.2:1..498"
                     /db_xref="GeneID:104061369"
ORIGIN      
        1 mayqtcslfv lsvimicfgr fgnslilaql qndidqlkad fnsshsdvad ggpiftdkli
       61 nwternekri ilsqivsmyl qmlentdksk ahirhiseel ytlknslpdg lkkmkdlmdl
      121 tklqmndlki qrkavnelfs vlqklvetst slkrkrsqiq rkckc
//
LOCUS       XP_053940926             170 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-26 [Cuculus canorus].
ACCESSION   XP_053940926
VERSION     XP_053940926.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084951.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..170
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..170
                     /product="interleukin-26"
                     /calculated_mol_wt=19020
     Region          <79..168
                     /region_name="IL10"
                     /note="Interleukin 10; cl02501"
                     /db_xref="CDD:413341"
     CDS             1..170
                     /gene="IL26"
                     /coded_by="XM_054084951.1:1..513"
                     /db_xref="GeneID:128854165"
ORIGIN      
        1 mkvysifrsg hflvllclft gegkksptgk htcrkgllsq vaenlyikat slkssvpkdl
       61 ikntrllkkt tkilfmtncs vrdqllsfyv qnvfshlgae sdklhiicaf emlqanmnac
      121 lpcapstrlt savkkikktf lklgekgiyk aiheldillp wiqayiqtii
//
LOCUS       XP_053940939             200 aa            linear   VRT 09-MAR-2023
DEFINITION  CD99 antigen isoform X1 [Cuculus canorus].
ACCESSION   XP_053940939
VERSION     XP_053940939.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084964.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..200
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..200
                     /product="CD99 antigen isoform X1"
                     /calculated_mol_wt=21044
     Region          39..191
                     /region_name="CD99L2"
                     /note="CD99 antigen like protein 2; pfam12301"
                     /db_xref="CDD:463526"
     CDS             1..200
                     /gene="CD99"
                     /coded_by="XM_054084964.1:68..670"
                     /db_xref="GeneID:128854167"
ORIGIN      
        1 mraasagrad mrgwrllsla vlfafvvsva gdfedfdlvh alattkqpvp pkkpppdydd
       61 dfslehalhp ddpkpsppan prdtdkpkhg prapadtgdf ddkdlldnss pgggggssgg
      121 snerkdsgpn kveesdasqg aiagivsavv atvigavssf iayqkkklcf kqsadeenvn
      181 mdshrgaqse ppvqrtllen
//
LOCUS       XP_053940947             199 aa            linear   VRT 09-MAR-2023
DEFINITION  CD99 antigen isoform X2 [Cuculus canorus].
ACCESSION   XP_053940947
VERSION     XP_053940947.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084972.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..199
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..199
                     /product="CD99 antigen isoform X2"
                     /calculated_mol_wt=20973
     Region          39..190
                     /region_name="CD99L2"
                     /note="CD99 antigen like protein 2; pfam12301"
                     /db_xref="CDD:463526"
     CDS             1..199
                     /gene="CD99"
                     /coded_by="XM_054084972.1:66..665"
                     /db_xref="GeneID:128854167"
ORIGIN      
        1 mraasagrad mrgwrllsla vlfafvvsva gdfedfdlvh alattkqpvp pkkpppdydd
       61 dfslehalhp ddpkpsppan prdtdkpkhg prapadtgdf ddkdlldnss pgggggssgg
      121 snerkdsgpn kveesdasqg aiagivsavv atvigavssf iayqkkklcf kqsdeenvnm
      181 dshrgaqsep pvqrtllen
//
LOCUS       XP_053940955             194 aa            linear   VRT 09-MAR-2023
DEFINITION  CD99 antigen isoform X3 [Cuculus canorus].
ACCESSION   XP_053940955
VERSION     XP_053940955.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084980.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..194
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..194
                     /product="CD99 antigen isoform X3"
                     /calculated_mol_wt=20548
     Region          33..185
                     /region_name="CD99L2"
                     /note="CD99 antigen like protein 2; pfam12301"
                     /db_xref="CDD:463526"
     CDS             1..194
                     /gene="CD99"
                     /coded_by="XM_054084980.1:16..600"
                     /db_xref="GeneID:128854167"
ORIGIN      
        1 mlmtiicvdi kkrtvfllll ssstgdfedf dlvhalattk qpvppkkppp dydddfsleh
       61 alhpddpkps ppanprdtdk pkhgprapad tgdfddkdll dnsspggggg ssggsnerkd
      121 sgpnkveesd asqgaiagiv savvatviga vssfiayqkk klcfkqsade envnmdshrg
      181 aqseppvqrt llen
//
LOCUS       XP_053940969             565 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-galactoside alpha-2,6-sialyltransferase 2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053940969
VERSION     XP_053940969.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054084994.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..565
                     /product="beta-galactoside alpha-2,6-sialyltransferase 2
                     isoform X1"
                     /calculated_mol_wt=64789
     Region          282..551
                     /region_name="GT29_ST6GAL2"
                     /note="beta-galactoside alpha-2,6-sialyltransferase 2;
                     cd23986"
                     /db_xref="CDD:467714"
     Site            order(337..339,360..361,382,472..474,492..493,502..504,
                     520)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:467714"
     CDS             1..565
                     /gene="ST6GAL2"
                     /coded_by="XM_054084994.1:54..1751"
                     /db_xref="GeneID:104056631"
ORIGIN      
        1 msrgsaarpr gtpgrsevsf sftntsrcre agksiamkpn lkqwkqlmlf gifawgllfl
       61 vifiyftdsn taepvpssfs yietkrllpl qgkqrvimga ihdpsfseti dgnevllned
      121 llgtfksrtg sikkwtdled afrsedeffp sqigrqsksa fyqvnddylf aagqpqshnh
      181 leeiaklisa dednpkvnil qnnwshqrrm rkrstkhrrs qmldesddwd glystmsksf
      241 lyklwkgdvs skmlnprlqk amkdylstnk hgvrfkgkrn skltgdqlfc elkervnvkt
      301 idgkeapfst lgwekhvpqi plgklythgf gscavvmsag ailnsslgde idshdavlrf
      361 nsaptrgyek dvgnkttmri insqiltnpn hhfvdsslyk dvilvawdpa pysanlnvwy
      421 kkpdynlftp yvqhrrknpn qpfyilhpkf iwqlwdiiqe ntkekiqpnp pssgfigili
      481 mmsmcnevhv yeyipsvrqt dlchyhelyy daactlgayh pllyekllvq rmnkglqddl
      541 yrkgkvilpg fkavkcpdrn nfphl
//
LOCUS       XP_053940976             559 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-galactoside alpha-2,6-sialyltransferase 2 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053940976
VERSION     XP_053940976.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085001.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..559
                     /product="beta-galactoside alpha-2,6-sialyltransferase 2
                     isoform X2"
                     /calculated_mol_wt=64254
     Region          276..545
                     /region_name="GT29_ST6GAL2"
                     /note="beta-galactoside alpha-2,6-sialyltransferase 2;
                     cd23986"
                     /db_xref="CDD:467714"
     Site            order(331..333,354..355,376,466..468,486..487,496..498,
                     514)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:467714"
     CDS             1..559
                     /gene="ST6GAL2"
                     /coded_by="XM_054085001.1:71..1750"
                     /db_xref="GeneID:104056631"
ORIGIN      
        1 mklsrcgvci qvsfsftnts rcreagksia mkpnlkqwkq lmlfgifawg llflvifiyf
       61 tdsntaepvp ssfsyietkr llplqgkqrv imgaihdpsf setidgnevl lnedllgtfk
      121 srtgsikkwt dledafrsed effpsqigrq sksafyqvnd dylfaagqpq shnhleeiak
      181 lisadednpk vnilqnnwsh qrrmrkrstk hrrsqmldes ddwdglystm sksflyklwk
      241 gdvsskmlnp rlqkamkdyl stnkhgvrfk gkrnskltgd qlfcelkerv nvktidgkea
      301 pfstlgwekh vpqiplgkly thgfgscavv msagailnss lgdeidshda vlrfnsaptr
      361 gyekdvgnkt tmriinsqil tnpnhhfvds slykdvilva wdpapysanl nvwykkpdyn
      421 lftpyvqhrr knpnqpfyil hpkfiwqlwd iiqentkeki qpnppssgfi gilimmsmcn
      481 evhvyeyips vrqtdlchyh elyydaactl gayhpllyek llvqrmnkgl qddlyrkgkv
      541 ilpgfkavkc pdrnnfphl
//
LOCUS       XP_053940984             529 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-galactoside alpha-2,6-sialyltransferase 2 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053940984
VERSION     XP_053940984.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085009.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..529
                     /product="beta-galactoside alpha-2,6-sialyltransferase 2
                     isoform X3"
                     /calculated_mol_wt=60991
     Region          246..515
                     /region_name="GT29_ST6GAL2"
                     /note="beta-galactoside alpha-2,6-sialyltransferase 2;
                     cd23986"
                     /db_xref="CDD:467714"
     Site            order(301..303,324..325,346,436..438,456..457,466..468,
                     484)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:467714"
     CDS             1..529
                     /gene="ST6GAL2"
                     /coded_by="XM_054085009.1:329..1918"
                     /db_xref="GeneID:104056631"
ORIGIN      
        1 mkpnlkqwkq lmlfgifawg llflvifiyf tdsntaepvp ssfsyietkr llplqgkqrv
       61 imgaihdpsf setidgnevl lnedllgtfk srtgsikkwt dledafrsed effpsqigrq
      121 sksafyqvnd dylfaagqpq shnhleeiak lisadednpk vnilqnnwsh qrrmrkrstk
      181 hrrsqmldes ddwdglystm sksflyklwk gdvsskmlnp rlqkamkdyl stnkhgvrfk
      241 gkrnskltgd qlfcelkerv nvktidgkea pfstlgwekh vpqiplgkly thgfgscavv
      301 msagailnss lgdeidshda vlrfnsaptr gyekdvgnkt tmriinsqil tnpnhhfvds
      361 slykdvilva wdpapysanl nvwykkpdyn lftpyvqhrr knpnqpfyil hpkfiwqlwd
      421 iiqentkeki qpnppssgfi gilimmsmcn evhvyeyips vrqtdlchyh elyydaactl
      481 gayhpllyek llvqrmnkgl qddlyrkgkv ilpgfkavkc pdrnnfphl
//
LOCUS       XP_053940991             529 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-galactoside alpha-2,6-sialyltransferase 2 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053940991
VERSION     XP_053940991.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085016.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..529
                     /product="beta-galactoside alpha-2,6-sialyltransferase 2
                     isoform X3"
                     /calculated_mol_wt=60991
     Region          246..515
                     /region_name="GT29_ST6GAL2"
                     /note="beta-galactoside alpha-2,6-sialyltransferase 2;
                     cd23986"
                     /db_xref="CDD:467714"
     Site            order(301..303,324..325,346,436..438,456..457,466..468,
                     484)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:467714"
     CDS             1..529
                     /gene="ST6GAL2"
                     /coded_by="XM_054085016.1:199..1788"
                     /db_xref="GeneID:104056631"
ORIGIN      
        1 mkpnlkqwkq lmlfgifawg llflvifiyf tdsntaepvp ssfsyietkr llplqgkqrv
       61 imgaihdpsf setidgnevl lnedllgtfk srtgsikkwt dledafrsed effpsqigrq
      121 sksafyqvnd dylfaagqpq shnhleeiak lisadednpk vnilqnnwsh qrrmrkrstk
      181 hrrsqmldes ddwdglystm sksflyklwk gdvsskmlnp rlqkamkdyl stnkhgvrfk
      241 gkrnskltgd qlfcelkerv nvktidgkea pfstlgwekh vpqiplgkly thgfgscavv
      301 msagailnss lgdeidshda vlrfnsaptr gyekdvgnkt tmriinsqil tnpnhhfvds
      361 slykdvilva wdpapysanl nvwykkpdyn lftpyvqhrr knpnqpfyil hpkfiwqlwd
      421 iiqentkeki qpnppssgfi gilimmsmcn evhvyeyips vrqtdlchyh elyydaactl
      481 gayhpllyek llvqrmnkgl qddlyrkgkv ilpgfkavkc pdrnnfphl
//
LOCUS       XP_053940999             529 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-galactoside alpha-2,6-sialyltransferase 2 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053940999
VERSION     XP_053940999.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085024.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..529
                     /product="beta-galactoside alpha-2,6-sialyltransferase 2
                     isoform X3"
                     /calculated_mol_wt=60991
     Region          246..515
                     /region_name="GT29_ST6GAL2"
                     /note="beta-galactoside alpha-2,6-sialyltransferase 2;
                     cd23986"
                     /db_xref="CDD:467714"
     Site            order(301..303,324..325,346,436..438,456..457,466..468,
                     484)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:467714"
     CDS             1..529
                     /gene="ST6GAL2"
                     /coded_by="XM_054085024.1:275..1864"
                     /db_xref="GeneID:104056631"
ORIGIN      
        1 mkpnlkqwkq lmlfgifawg llflvifiyf tdsntaepvp ssfsyietkr llplqgkqrv
       61 imgaihdpsf setidgnevl lnedllgtfk srtgsikkwt dledafrsed effpsqigrq
      121 sksafyqvnd dylfaagqpq shnhleeiak lisadednpk vnilqnnwsh qrrmrkrstk
      181 hrrsqmldes ddwdglystm sksflyklwk gdvsskmlnp rlqkamkdyl stnkhgvrfk
      241 gkrnskltgd qlfcelkerv nvktidgkea pfstlgwekh vpqiplgkly thgfgscavv
      301 msagailnss lgdeidshda vlrfnsaptr gyekdvgnkt tmriinsqil tnpnhhfvds
      361 slykdvilva wdpapysanl nvwykkpdyn lftpyvqhrr knpnqpfyil hpkfiwqlwd
      421 iiqentkeki qpnppssgfi gilimmsmcn evhvyeyips vrqtdlchyh elyydaactl
      481 gayhpllyek llvqrmnkgl qddlyrkgkv ilpgfkavkc pdrnnfphl
//
LOCUS       XP_053941006             529 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-galactoside alpha-2,6-sialyltransferase 2 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053941006
VERSION     XP_053941006.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085031.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..529
                     /product="beta-galactoside alpha-2,6-sialyltransferase 2
                     isoform X3"
                     /calculated_mol_wt=60991
     Region          246..515
                     /region_name="GT29_ST6GAL2"
                     /note="beta-galactoside alpha-2,6-sialyltransferase 2;
                     cd23986"
                     /db_xref="CDD:467714"
     Site            order(301..303,324..325,346,436..438,456..457,466..468,
                     484)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:467714"
     CDS             1..529
                     /gene="ST6GAL2"
                     /coded_by="XM_054085031.1:1100..2689"
                     /db_xref="GeneID:104056631"
ORIGIN      
        1 mkpnlkqwkq lmlfgifawg llflvifiyf tdsntaepvp ssfsyietkr llplqgkqrv
       61 imgaihdpsf setidgnevl lnedllgtfk srtgsikkwt dledafrsed effpsqigrq
      121 sksafyqvnd dylfaagqpq shnhleeiak lisadednpk vnilqnnwsh qrrmrkrstk
      181 hrrsqmldes ddwdglystm sksflyklwk gdvsskmlnp rlqkamkdyl stnkhgvrfk
      241 gkrnskltgd qlfcelkerv nvktidgkea pfstlgwekh vpqiplgkly thgfgscavv
      301 msagailnss lgdeidshda vlrfnsaptr gyekdvgnkt tmriinsqil tnpnhhfvds
      361 slykdvilva wdpapysanl nvwykkpdyn lftpyvqhrr knpnqpfyil hpkfiwqlwd
      421 iiqentkeki qpnppssgfi gilimmsmcn evhvyeyips vrqtdlchyh elyydaactl
      481 gayhpllyek llvqrmnkgl qddlyrkgkv ilpgfkavkc pdrnnfphl
//
LOCUS       XP_053941013             529 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-galactoside alpha-2,6-sialyltransferase 2 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053941013
VERSION     XP_053941013.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085038.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..529
                     /product="beta-galactoside alpha-2,6-sialyltransferase 2
                     isoform X3"
                     /calculated_mol_wt=60991
     Region          246..515
                     /region_name="GT29_ST6GAL2"
                     /note="beta-galactoside alpha-2,6-sialyltransferase 2;
                     cd23986"
                     /db_xref="CDD:467714"
     Site            order(301..303,324..325,346,436..438,456..457,466..468,
                     484)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:467714"
     CDS             1..529
                     /gene="ST6GAL2"
                     /coded_by="XM_054085038.1:103..1692"
                     /db_xref="GeneID:104056631"
ORIGIN      
        1 mkpnlkqwkq lmlfgifawg llflvifiyf tdsntaepvp ssfsyietkr llplqgkqrv
       61 imgaihdpsf setidgnevl lnedllgtfk srtgsikkwt dledafrsed effpsqigrq
      121 sksafyqvnd dylfaagqpq shnhleeiak lisadednpk vnilqnnwsh qrrmrkrstk
      181 hrrsqmldes ddwdglystm sksflyklwk gdvsskmlnp rlqkamkdyl stnkhgvrfk
      241 gkrnskltgd qlfcelkerv nvktidgkea pfstlgwekh vpqiplgkly thgfgscavv
      301 msagailnss lgdeidshda vlrfnsaptr gyekdvgnkt tmriinsqil tnpnhhfvds
      361 slykdvilva wdpapysanl nvwykkpdyn lftpyvqhrr knpnqpfyil hpkfiwqlwd
      421 iiqentkeki qpnppssgfi gilimmsmcn evhvyeyips vrqtdlchyh elyydaactl
      481 gayhpllyek llvqrmnkgl qddlyrkgkv ilpgfkavkc pdrnnfphl
//
LOCUS       XP_053941024             510 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-galactoside alpha-2,6-sialyltransferase 2 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053941024
VERSION     XP_053941024.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085049.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..510
                     /product="beta-galactoside alpha-2,6-sialyltransferase 2
                     isoform X4"
                     /calculated_mol_wt=58655
     Region          282..>480
                     /region_name="GT29"
                     /note="glycosyltransferase family 29; cl45931"
                     /db_xref="CDD:480271"
     CDS             1..510
                     /gene="ST6GAL2"
                     /coded_by="XM_054085049.1:54..1586"
                     /db_xref="GeneID:104056631"
ORIGIN      
        1 msrgsaarpr gtpgrsevsf sftntsrcre agksiamkpn lkqwkqlmlf gifawgllfl
       61 vifiyftdsn taepvpssfs yietkrllpl qgkqrvimga ihdpsfseti dgnevllned
      121 llgtfksrtg sikkwtdled afrsedeffp sqigrqsksa fyqvnddylf aagqpqshnh
      181 leeiaklisa dednpkvnil qnnwshqrrm rkrstkhrrs qmldesddwd glystmsksf
      241 lyklwkgdvs skmlnprlqk amkdylstnk hgvrfkgkrn skltgdqlfc elkervnvkt
      301 idgkeapfst lgwekhvpqi plgklythgf gscavvmsag ailnsslgde idshdavlrf
      361 nsaptrgyek dvgnkttmri insqiltnpn hhfvdsslyk dvilvawdpa pysanlnvwy
      421 kkpdynlftp yvqhrrknpn qpfyilhpkf iwqlwdiiqe ntkekiqpnp pssgfieyll
      481 dsevlcwhhr aemhqtnesi whiiqrgwnh
//
LOCUS       XP_053941034             366 aa            linear   VRT 09-MAR-2023
DEFINITION  opsin-3-like [Cuculus canorus].
ACCESSION   XP_053941034
VERSION     XP_053941034.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085059.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..366
                     /product="opsin-3-like"
                     /calculated_mol_wt=40622
     Region          30..304
                     /region_name="7tmA_tmt_opsin"
                     /note="teleost multiple tissue (tmt) opsin, member of the
                     class A family of seven-transmembrane G protein-coupled
                     receptors; cd15086"
                     /db_xref="CDD:320214"
     Region          31..57
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320214"
     Region          64..90
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320214"
     Region          102..132
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320214"
     Site            order(105,109..110,113..114,177..180,196..197,201,252,256,
                     279,283)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:320214"
     Region          142..164
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320214"
     Region          189..219
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320214"
     Region          232..262
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320214"
     Region          272..297
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320214"
     CDS             1..366
                     /gene="LOC128854170"
                     /coded_by="XM_054085059.1:602..1702"
                     /db_xref="GeneID:128854170"
ORIGIN      
        1 mnhtwtynls fnaptdtlep raalsrnght avavflgfil vfgffnnliv lilfckfkml
       61 rnpvnmllln isisdmlvci sgttlsfasn ihgkwiggeh gcrwygfvns cfgivslisl
      121 avlsyeryst ltlcnkrsad yqkallavgg swiyslmwtv ppligwssyg iegagtscsv
      181 rwssesaest syiiclfifc lvipvmvmmy cygrllyavk qvgkihknaa rkreyhvlfm
      241 vvttvicylv cwipygvial latfgkpgvv tpvasvipsi laksstvcnp iiyilmnkqf
      301 ykcfrqlfhc qppsssdgep tchskvtvfq lnqktdggna fnnkprpeta tkmisllhpe
      361 psmepi
//
LOCUS       XP_009555437             792 aa            linear   VRT 09-MAR-2023
DEFINITION  ribonucleoside-diphosphate reductase large subunit isoform X1
            [Cuculus canorus].
ACCESSION   XP_009555437
VERSION     XP_009555437.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557142.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555437.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..792
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..792
                     /product="ribonucleoside-diphosphate reductase large
                     subunit isoform X1"
                     /calculated_mol_wt=90097
     Region          1..792
                     /region_name="PLN02437"
                     /note="ribonucleoside--diphosphate reductase large
                     subunit"
                     /db_xref="CDD:178056"
     Site            order(202..203,217..218,247,427,429,431,446,602..607)
                     /site_type="active"
                     /db_xref="CDD:153088"
     Site            order(214,228..229,232,235..236,239..240,243,258,270,
                     274..275,277..278,281..282,285..289)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:153088"
     Site            order(218,427,429,431,444,737..738)
                     /site_type="active"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:153088"
     Site            order(226..228,231,243,256,270,275)
                     /site_type="active"
                     /note="effector binding site [active]"
                     /db_xref="CDD:153088"
     Site            order(336,339..340,342..343,387,391,398,716..718,720..721,
                     725..726,728..729)
                     /site_type="active"
                     /note="R2 peptide binding site [active]"
                     /db_xref="CDD:153088"
     CDS             1..792
                     /gene="RRM1"
                     /coded_by="XM_009557142.2:104..2482"
                     /db_xref="GeneID:104055945"
ORIGIN      
        1 mhvvkrdgrq ervmfdkits riqklcygln adfvdpaqit mkviqglysg vttveldtla
       61 aetaatlttk hpdyailaar iavsnlhket kkvfsdvmdd lynyinphng khspmisket
      121 lnivlankdr lnsaiiydrd fsynyfgfkt lersyllkin skvaerpqhm lmrvsvgihg
      181 ndidaaiety nllserwfth asptlfnagt nrpqlsscfl lcmkddsieg iydtlkqcal
      241 isksaggigl avsciratgs yiagtngnsn glvpmlrvyn ntaryvdqgg nkrpgafaiy
      301 lepwhldife fldlkkntgk eeqrardlff alwipdlfmk rvetnqdwsl mcpnecpgld
      361 evwgeefekl yesyekqgrv rrvvkaqqlw yaiiesqtet gtpymlykds cnrksnqqnl
      421 gtikcsnlct eiveytskde vavcnlasia lnmyvtsehv ydfkklaevt kvivrnlnki
      481 idinyypvpe aersnrrhrp igigvqglad afilmrypfe saeaqrlnqq ifetiyygal
      541 eascelareq gpyetyagsp vskgvlqydm wsvtpsdlwd wkalkekiak ygvrnsllis
      601 pmptastaqi lgnnesiepy tsniytrrvl sgefqvvnph llkdltergl wneemknhii
      661 ahngsiqnip eipddlkqly ktvweisqkt vlkmaadrga fidqsqslni hiaepnygkl
      721 tsmhfygwkq glktgmyylr tkpaanpiqf tlnkeklrer ekaskeeeek ernkaamvcs
      781 lenrdeclmc gs
//
LOCUS       XP_053941056             752 aa            linear   VRT 09-MAR-2023
DEFINITION  ribonucleoside-diphosphate reductase large subunit isoform X2
            [Cuculus canorus].
ACCESSION   XP_053941056
VERSION     XP_053941056.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085081.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..752
                     /product="ribonucleoside-diphosphate reductase large
                     subunit isoform X2"
                     /calculated_mol_wt=85435
     Region          2..752
                     /region_name="PLN02437"
                     /note="ribonucleoside--diphosphate reductase large
                     subunit"
                     /db_xref="CDD:178056"
     Site            order(162..163,177..178,207,387,389,391,406,562..567)
                     /site_type="active"
                     /db_xref="CDD:153088"
     Site            order(174,188..189,192,195..196,199..200,203,218,230,
                     234..235,237..238,241..242,245..249)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:153088"
     Site            order(178,387,389,391,404,697..698)
                     /site_type="active"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:153088"
     Site            order(186..188,191,203,216,230,235)
                     /site_type="active"
                     /note="effector binding site [active]"
                     /db_xref="CDD:153088"
     Site            order(296,299..300,302..303,347,351,358,676..678,680..681,
                     685..686,688..689)
                     /site_type="active"
                     /note="R2 peptide binding site [active]"
                     /db_xref="CDD:153088"
     CDS             1..752
                     /gene="RRM1"
                     /coded_by="XM_054085081.1:269..2527"
                     /db_xref="GeneID:104055945"
ORIGIN      
        1 mkviqglysg vttveldtla aetaatlttk hpdyailaar iavsnlhket kkvfsdvmdd
       61 lynyinphng khspmisket lnivlankdr lnsaiiydrd fsynyfgfkt lersyllkin
      121 skvaerpqhm lmrvsvgihg ndidaaiety nllserwfth asptlfnagt nrpqlsscfl
      181 lcmkddsieg iydtlkqcal isksaggigl avsciratgs yiagtngnsn glvpmlrvyn
      241 ntaryvdqgg nkrpgafaiy lepwhldife fldlkkntgk eeqrardlff alwipdlfmk
      301 rvetnqdwsl mcpnecpgld evwgeefekl yesyekqgrv rrvvkaqqlw yaiiesqtet
      361 gtpymlykds cnrksnqqnl gtikcsnlct eiveytskde vavcnlasia lnmyvtsehv
      421 ydfkklaevt kvivrnlnki idinyypvpe aersnrrhrp igigvqglad afilmrypfe
      481 saeaqrlnqq ifetiyygal eascelareq gpyetyagsp vskgvlqydm wsvtpsdlwd
      541 wkalkekiak ygvrnsllis pmptastaqi lgnnesiepy tsniytrrvl sgefqvvnph
      601 llkdltergl wneemknhii ahngsiqnip eipddlkqly ktvweisqkt vlkmaadrga
      661 fidqsqslni hiaepnygkl tsmhfygwkq glktgmyylr tkpaanpiqf tlnkeklrer
      721 ekaskeeeek ernkaamvcs lenrdeclmc gs
//
LOCUS       XP_053941063             695 aa            linear   VRT 09-MAR-2023
DEFINITION  ribonucleoside-diphosphate reductase large subunit isoform X3
            [Cuculus canorus].
ACCESSION   XP_053941063
VERSION     XP_053941063.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085088.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..695
                     /product="ribonucleoside-diphosphate reductase large
                     subunit isoform X3"
                     /calculated_mol_wt=79321
     Region          1..695
                     /region_name="RNR_PFL"
                     /note="Ribonucleotide reductase and Pyruvate formate
                     lyase; cl38938"
                     /db_xref="CDD:476821"
     Site            order(105..106,120..121,150,330,332,334,349,505..510)
                     /site_type="active"
                     /db_xref="CDD:153088"
     Site            order(117,131..132,135,138..139,142..143,146,161,173,
                     177..178,180..181,184..185,188..192)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:153088"
     Site            order(121,330,332,334,347,640..641)
                     /site_type="active"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:153088"
     Site            order(129..131,134,146,159,173,178)
                     /site_type="active"
                     /note="effector binding site [active]"
                     /db_xref="CDD:153088"
     Site            order(239,242..243,245..246,290,294,301,619..621,623..624,
                     628..629,631..632)
                     /site_type="active"
                     /note="R2 peptide binding site [active]"
                     /db_xref="CDD:153088"
     CDS             1..695
                     /gene="RRM1"
                     /coded_by="XM_054085088.1:144..2231"
                     /db_xref="GeneID:104055945"
ORIGIN      
        1 mddlynyinp hngkhspmis ketlnivlan kdrlnsaiiy drdfsynyfg fktlersyll
       61 kinskvaerp qhmlmrvsvg ihgndidaai etynllserw fthasptlfn agtnrpqlss
      121 cfllcmkdds iegiydtlkq calisksagg iglavscira tgsyiagtng nsnglvpmlr
      181 vynntaryvd qggnkrpgaf aiylepwhld ifefldlkkn tgkeeqrard lffalwipdl
      241 fmkrvetnqd wslmcpnecp gldevwgeef eklyesyekq grvrrvvkaq qlwyaiiesq
      301 tetgtpymly kdscnrksnq qnlgtikcsn lcteiveyts kdevavcnla sialnmyvts
      361 ehvydfkkla evtkvivrnl nkiidinyyp vpeaersnrr hrpigigvqg ladafilmry
      421 pfesaeaqrl nqqifetiyy galeascela reqgpyetya gspvskgvlq ydmwsvtpsd
      481 lwdwkalkek iakygvrnsl lispmptast aqilgnnesi epytsniytr rvlsgefqvv
      541 nphllkdlte rglwneemkn hiiahngsiq nipeipddlk qlyktvweis qktvlkmaad
      601 rgafidqsqs lnihiaepny gkltsmhfyg wkqglktgmy ylrtkpaanp iqftlnkekl
      661 rerekaskee eekernkaam vcslenrdec lmcgs
//
LOCUS       XP_053941072             328 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: olfactory receptor 52J3-like [Cuculus
            canorus].
ACCESSION   XP_053941072
VERSION     XP_053941072.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085097.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..328
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..328
                     /product="LOW QUALITY PROTEIN: olfactory receptor
                     52J3-like"
                     /calculated_mol_wt=36747
     Region          12..285
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          13..37
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          46..68
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          84..106
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          129..145
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          182..205
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          224..246
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          257..282
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..328
                     /gene="LOC104056002"
                     /coded_by="XM_054085097.1:1892..2878"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /db_xref="GeneID:104056002"
ORIGIN      
        1 mgipglealh rwisiplcft yimtllgnsm vllavkldks lrepkyyfis ilavidlifs
       61 tavvpkildv fwldsreigf eacfmqkffi hmftavesev lwamsfdwhi aicdplrytt
      121 iltssrtiqi glpslargag vmtplmclli sfpycktrvi phsyceqiam velacadpsv
      181 sdlyslitat llvgtnsvfi tfsygvilrs vmrlpsqeaq lkalrtcgch vfiillfyig
      241 gllsmylqmf sfglethiqv lmadlylvvp pmlnpliygi kmkqiqkgif rllgqlvgls
      301 vsgadedrsd avrgmqhqki sypileqv
//
LOCUS       XP_053941084             736 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear protein MDM1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053941084
VERSION     XP_053941084.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085109.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..736
                     /product="nuclear protein MDM1 isoform X1"
                     /calculated_mol_wt=82426
     Region          9..554
                     /region_name="MDM1"
                     /note="Nuclear protein MDM1; pfam15501"
                     /db_xref="CDD:464751"
     CDS             1..736
                     /gene="MDM1"
                     /coded_by="XM_054085109.1:75..2285"
                     /db_xref="GeneID:104061518"
ORIGIN      
        1 mparcrglse ykrnfkwktp efcspsqqqk slwaglrsdq fgitrepnfi skrrvpyydp
       61 qisksfewta dcdlndphet ealrteelht dhnnndvnre nieapegprp ppkvqshsvd
      121 srgetalvla ennmkrspsa appnqkeafl spkkelekmg nglhrvfqrk agmnishlnt
      181 fprnseyqsq fvwkspheks pilaaeqayt sksippfktp aitsetayer nfresspvkd
      241 pqerggseek evpaheqskr eepfqkpaed aakqgkseqk hpkqknkqhi spkplslhts
      301 rgkmnteyrs kflspaqyfy kdgvwsrsrs kvpnqasqnt lnsmwymevr elrerakayr
      361 qrvegthfsr yhlnqilsdn nslwdvssts sseegisnni raldlagvse kettpspkml
      421 qqpdsgeqph qdstekkems daltvpvkrr lvwgehegte erknrqstee elkqdeqaav
      481 vaqqlegnnt danedkkieg enalvlnsaa eshsssvssr aggrlptpel ralggaqrth
      541 hdlttpavgg avlvsppksk ssssqrrmrg lgtdissakp dargaskrrs frpdvaveav
      601 slltsppagl gtsdplplrq dqqhpdsasg qqaplasahr ehssvppllk sakscsmpyw
      661 sssrriqgtl kdpefqhngn vgnpkmrsfq lplqernynd eddrlsqisa rsaassslas
      721 qileraqkrk dfwgkt
//
LOCUS       XP_053941092             723 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear protein MDM1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053941092
VERSION     XP_053941092.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085117.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..723
                     /product="nuclear protein MDM1 isoform X2"
                     /calculated_mol_wt=80869
     Region          9..541
                     /region_name="MDM1"
                     /note="Nuclear protein MDM1; pfam15501"
                     /db_xref="CDD:464751"
     CDS             1..723
                     /gene="MDM1"
                     /coded_by="XM_054085117.1:75..2246"
                     /db_xref="GeneID:104061518"
ORIGIN      
        1 mparcrglse ykrnfkwktp efcspsqqqk slwaglrsdq fgitrepnfi skrrvpyydp
       61 qisksfewta dcdlndphet ealrteelht dhnnndvnre nieapegprp ppkvqshsvd
      121 srgetalvla ennmkrspsa appnqkeafl spkkelekmg nglhrvfqrk agmnishlnt
      181 fprnseyqsq fvwkspheks pilaaeqayt sksippfktp aitsetayer nfresspvkd
      241 pqerggseek evpaheqskr eepfqkpaed aakqgkseqk hpkqknkqhi spkplslhts
      301 rgkmnteyrs kflspaqyfy kdgvwsrsrs kvpnqvrelr erakayrqrv egthfsryhl
      361 nqilsdnnsl wdvsstssse egisnniral dlagvseket tpspkmlqqp dsgeqphqds
      421 tekkemsdal tvpvkrrlvw gehegteerk nrqsteeelk qdeqaavvaq qlegnntdan
      481 edkkiegena lvlnsaaesh sssvssragg rlptpelral ggaqrthhdl ttpavggavl
      541 vsppksksss sqrrmrglgt dissakpdar gaskrrsfrp dvaveavsll tsppaglgts
      601 dplplrqdqq hpdsasgqqa plasahrehs svppllksak scsmpywsss rriqgtlkdp
      661 efqhngnvgn pkmrsfqlpl qernyndedd rlsqisarsa assslasqil eraqkrkdfw
      721 gkt
//
LOCUS       XP_053941100             686 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear protein MDM1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053941100
VERSION     XP_053941100.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085125.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="nuclear protein MDM1 isoform X3"
                     /calculated_mol_wt=76705
     Region          9..504
                     /region_name="MDM1"
                     /note="Nuclear protein MDM1; pfam15501"
                     /db_xref="CDD:464751"
     CDS             1..686
                     /gene="MDM1"
                     /coded_by="XM_054085125.1:75..2135"
                     /db_xref="GeneID:104061518"
ORIGIN      
        1 mparcrglse ykrnfkwktp efcspsqqqk slwaglrsdq fgitrepnfi skrrvpyydp
       61 qisksfewta dcdlndphet ealrteelht dhnnndvnre nieapegprp ppkvqshsvd
      121 srgetalvla ennmkrspsa appnqkeafl spkkelekmg nglhrvfqrk agmnishlnt
      181 fprnseyqsq fvwkspheks pilaaeqayt sksippfktp aitsetayer nfresspvkd
      241 pqerggseek evpaheqvnt flkensqyfy kdgvwsrsrs kvpnqasqnt lnsmwymevr
      301 elrerakayr qrvegthfsr yhlnqilsdn nslwdvssts sseegisnni raldlagvse
      361 kettpspkml qqpdsgeqph qdstekkems daltvpvkrr lvwgehegte erknrqstee
      421 elkqdeqaav vaqqlegnnt danedkkieg enalvlnsaa eshsssvssr aggrlptpel
      481 ralggaqrth hdlttpavgg avlvsppksk ssssqrrmrg lgtdissakp dargaskrrs
      541 frpdvaveav slltsppagl gtsdplplrq dqqhpdsasg qqaplasahr ehssvppllk
      601 sakscsmpyw sssrriqgtl kdpefqhngn vgnpkmrsfq lplqernynd eddrlsqisa
      661 rsaassslas qileraqkrk dfwgkt
//
LOCUS       XP_053941109             673 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear protein MDM1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053941109
VERSION     XP_053941109.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085134.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..673
                     /product="nuclear protein MDM1 isoform X4"
                     /calculated_mol_wt=75148
     Region          9..491
                     /region_name="MDM1"
                     /note="Nuclear protein MDM1; pfam15501"
                     /db_xref="CDD:464751"
     CDS             1..673
                     /gene="MDM1"
                     /coded_by="XM_054085134.1:75..2096"
                     /db_xref="GeneID:104061518"
ORIGIN      
        1 mparcrglse ykrnfkwktp efcspsqqqk slwaglrsdq fgitrepnfi skrrvpyydp
       61 qisksfewta dcdlndphet ealrteelht dhnnndvnre nieapegprp ppkvqshsvd
      121 srgetalvla ennmkrspsa appnqkeafl spkkelekmg nglhrvfqrk agmnishlnt
      181 fprnseyqsq fvwkspheks pilaaeqayt sksippfktp aitsetayer nfresspvkd
      241 pqerggseek evpaheqvnt flkensqyfy kdgvwsrsrs kvpnqvrelr erakayrqrv
      301 egthfsryhl nqilsdnnsl wdvsstssse egisnniral dlagvseket tpspkmlqqp
      361 dsgeqphqds tekkemsdal tvpvkrrlvw gehegteerk nrqsteeelk qdeqaavvaq
      421 qlegnntdan edkkiegena lvlnsaaesh sssvssragg rlptpelral ggaqrthhdl
      481 ttpavggavl vsppksksss sqrrmrglgt dissakpdar gaskrrsfrp dvaveavsll
      541 tsppaglgts dplplrqdqq hpdsasgqqa plasahrehs svppllksak scsmpywsss
      601 rriqgtlkdp efqhngnvgn pkmrsfqlpl qernyndedd rlsqisarsa assslasqil
      661 eraqkrkdfw gkt
//
LOCUS       XP_053941117             603 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear protein MDM1 isoform X5 [Cuculus canorus].
ACCESSION   XP_053941117
VERSION     XP_053941117.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085142.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..603
                     /product="nuclear protein MDM1 isoform X5"
                     /calculated_mol_wt=67061
     Region          <1..421
                     /region_name="MDM1"
                     /note="Nuclear protein MDM1; pfam15501"
                     /db_xref="CDD:464751"
     CDS             1..603
                     /gene="MDM1"
                     /coded_by="XM_054085142.1:346..2157"
                     /db_xref="GeneID:104061518"
ORIGIN      
        1 mkrspsaapp nqkeaflspk kelekmgngl hrvfqrkagm nishlntfpr nseyqsqfvw
       61 ksphekspil aaeqaytsks ippfktpait setayernfr esspvkdpqe rggseekevp
      121 aheqskreep fqkpaedaak qgkseqkhpk qknkqhispk plslhtsrgk mnteyrskfl
      181 spaqyfykdg vwsrsrskvp nqasqntlns mwymevrelr erakayrqrv egthfsryhl
      241 nqilsdnnsl wdvsstssse egisnniral dlagvseket tpspkmlqqp dsgeqphqds
      301 tekkemsdal tvpvkrrlvw gehegteerk nrqsteeelk qdeqaavvaq qlegnntdan
      361 edkkiegena lvlnsaaesh sssvssragg rlptpelral ggaqrthhdl ttpavggavl
      421 vsppksksss sqrrmrglgt dissakpdar gaskrrsfrp dvaveavsll tsppaglgts
      481 dplplrqdqq hpdsasgqqa plasahrehs svppllksak scsmpywsss rriqgtlkdp
      541 efqhngnvgn pkmrsfqlpl qernyndedd rlsqisarsa assslasqil eraqkrkdfw
      601 gkt
//
LOCUS       XP_053941129             298 aa            linear   VRT 09-MAR-2023
DEFINITION  homeobox protein NANOG [Cuculus canorus].
ACCESSION   XP_053941129
VERSION     XP_053941129.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085154.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..298
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..298
                     /product="homeobox protein NANOG"
                     /calculated_mol_wt=32896
     Region          88..143
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     CDS             1..298
                     /gene="LOC104060661"
                     /coded_by="XM_054085154.1:71..967"
                     /db_xref="GeneID:104060661"
ORIGIN      
        1 msaplalppc lpcrdccwls pgsapadppp clektpshpg dspassssgt liqytpdsat
       61 sptaerpsph psfqkvkqeg egvvkkaksr tafsqeqlqm lhqrfqsqky lspqqirela
      121 aalgltykqv ktwfqnqrmk fkrcqkesqw vekgvylpqn gfhqaayldi pptfhqgfpv
      181 gasrnlqhvm tnmhqaysss qtygngqsly sfmavedegf fgkggtscnt qqamgllsqq
      241 mnfyhscpan mdyvslesed tygfqstsds iapftsspvr hqyqapwhsl gtqsgyes
//
LOCUS       XP_053941140             435 aa            linear   VRT 09-MAR-2023
DEFINITION  BEN domain-containing protein 7 isoform X1 [Cuculus canorus].
ACCESSION   XP_053941140
VERSION     XP_053941140.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085165.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..435
                     /product="BEN domain-containing protein 7 isoform X1"
                     /calculated_mol_wt=48755
     Region          309..388
                     /region_name="BEN"
                     /note="BEN domain; pfam10523"
                     /db_xref="CDD:463133"
     CDS             1..435
                     /gene="BEND7"
                     /coded_by="XM_054085165.1:308..1615"
                     /db_xref="GeneID:104066198"
ORIGIN      
        1 mefaqrkrsr ksqsfklike dyhhemykis dysndvnget ketqpvflgd esreikkqit
       61 gmrrllndst griyqrvgke geklkeepqd ldlawaqrln paaesqaslr psqsgawnel
      121 spqasqfsgq cgtrsktfqn qtrtmasnge ipmvnssvgp ncctcncqst lqailqelrt
      181 mrklmqsqav gtqnrqqppv plictqksti srkrnkkkkp plktiepitm nkkpnatene
      241 kklsansers slqavepplk letpvsgfgi vlesassdpe vqlaegfdvf mpksqldsil
      301 snytrsgsll frklvcaffd dktlanslpn gkrkrglndn rkgldqnivg aikvftekyc
      361 tanhvdklpg prdwvqilqd qiklarrrlk rdsaeatdcd erpdisllqt vflpsgnlfd
      421 tttdhlidan pdfsa
//
LOCUS       XP_009567070             430 aa            linear   VRT 09-MAR-2023
DEFINITION  BEN domain-containing protein 7 isoform X2 [Cuculus canorus].
ACCESSION   XP_009567070
VERSION     XP_009567070.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568775.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..430
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..430
                     /product="BEN domain-containing protein 7 isoform X2"
                     /calculated_mol_wt=48212
     Region          309..388
                     /region_name="BEN"
                     /note="BEN domain; pfam10523"
                     /db_xref="CDD:463133"
     CDS             1..430
                     /gene="BEND7"
                     /coded_by="XM_009568775.2:306..1598"
                     /db_xref="GeneID:104066198"
ORIGIN      
        1 mefaqrkrsr ksqsfklike dyhhemykis dysndvnget ketqpvflgd esreikkqit
       61 gmrrllndst griyqrvgke geklkeepqd ldlawaqrln paaesqaslr psqsgawnel
      121 spqasqfsgq cgtrsktfqn qtrtmasnge ipmvnssvgp ncctcncqst lqailqelrt
      181 mrklmqsqav gtqnrqqppv plictqksti srkrnkkkkp plktiepitm nkkpnatene
      241 kklsansers slqavepplk letpvsgfgi vlesassdpe vqlaegfdvf mpksqldsil
      301 snytrsgsll frklvcaffd dktlanslpn gkrkrglndn rkgldqnivg aikvftekyc
      361 tanhvdklpg prdwvqilqd qiklarrrlk rdsaeatdcd erpdisllqt gnlfdtttdh
      421 lidanpdfsa
//
LOCUS       XP_053941156             335 aa            linear   VRT 09-MAR-2023
DEFINITION  BEN domain-containing protein 7 isoform X3 [Cuculus canorus].
ACCESSION   XP_053941156
VERSION     XP_053941156.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085181.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..335
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..335
                     /product="BEN domain-containing protein 7 isoform X3"
                     /calculated_mol_wt=37590
     Region          209..288
                     /region_name="BEN"
                     /note="BEN domain; pfam10523"
                     /db_xref="CDD:463133"
     CDS             1..335
                     /gene="BEND7"
                     /coded_by="XM_054085181.1:311..1318"
                     /db_xref="GeneID:104066198"
ORIGIN      
        1 mefaqrkrsr ksqsfklike dyhhemykis dysndvnget ketqpvflge ipmvnssvgp
       61 ncctcncqst lqailqelrt mrklmqsqav gtqnrqqppv plictqksti srkrnkkkkp
      121 plktiepitm nkkpnatene kklsansers slqavepplk letpvsgfgi vlesassdpe
      181 vqlaegfdvf mpksqldsil snytrsgsll frklvcaffd dktlanslpn gkrkrglndn
      241 rkgldqnivg aikvftekyc tanhvdklpg prdwvqilqd qiklarrrlk rdsaeatdcd
      301 erpdisllqt vflpsgnlfd tttdhlidan pdfsa
//
LOCUS       XP_009564433             668 aa            linear   VRT 09-MAR-2023
DEFINITION  bestrophin-3 isoform X1 [Cuculus canorus].
ACCESSION   XP_009564433
VERSION     XP_009564433.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566138.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564433.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..668
                     /product="bestrophin-3 isoform X1"
                     /calculated_mol_wt=77410
     Region          8..313
                     /region_name="Bestrophin"
                     /note="RFP-TM, chloride channel; pfam01062"
                     /db_xref="CDD:460047"
     CDS             1..668
                     /gene="BEST3"
                     /coded_by="XM_009566138.2:169..2175"
                     /db_xref="GeneID:104063862"
ORIGIN      
        1 mtvtysskva natffgfhrl llkwkgsiyk llyrefivfa tlytaisvly rffltgsqkr
       61 ffeklsiycd kyaeqipvtf vlgfyvtlvv nrwwnqfvnl pwpdrlmfli sscvqgrdey
      121 grllrrtlmr yvnltsllif rsvstavykr fptmdhvvga gfmtryerki fdelksphlk
      181 ywvpfvwfgn laskarkegr irdsvdlqtl mnemnkyrsw csllfgydwv giplvytqvv
      241 tlavytfffa cligrqfldt dqgyqghdld lyipiftllq fffyagwlkv aeqlinpfge
      301 ddddfetnwc idrnlqvsll avdemhmnlp rmekdiywnd ssarppytka aadycipsfl
      361 gstiemglad teflygeewp weeekhqrrs vlrrvkrfls vhegpsspth rhysrqtsen
      421 svffpadekg hirrlqemht rgrhstssfk kkheradrsn rlqssrdlgp itetsrseaq
      481 faeggsdtss eiskpvpevi iseaeeetpd vldkpdlqte hstgiseekl qrslteanvt
      541 lldhpffppe mttyllgsev hqslptvige hkhepqgsni agfitdpern lqrwslpsfh
      601 shnrasnada vlsstdsett sqqrtssdgk nvaaagletf emqhlwenle sketdivefs
      661 nekterkl
//
LOCUS       XP_053941177             643 aa            linear   VRT 09-MAR-2023
DEFINITION  bestrophin-3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053941177
VERSION     XP_053941177.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085202.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..643
                     /product="bestrophin-3 isoform X2"
                     /calculated_mol_wt=74406
     Region          27..288
                     /region_name="Bestrophin"
                     /note="RFP-TM, chloride channel; pfam01062"
                     /db_xref="CDD:460047"
     CDS             1..643
                     /gene="BEST3"
                     /coded_by="XM_054085202.1:497..2428"
                     /db_xref="GeneID:104063862"
ORIGIN      
        1 micidvsfyr tylqllsgns snnterfflt gsqkrffekl siycdkyaeq ipvtfvlgfy
       61 vtlvvnrwwn qfvnlpwpdr lmflisscvq grdeygrllr rtlmryvnlt sllifrsvst
      121 avykrfptmd hvvgagfmtr yerkifdelk sphlkywvpf vwfgnlaska rkegrirdsv
      181 dlqtlmnemn kyrswcsllf gydwvgiplv ytqvvtlavy tfffacligr qfldtdqgyq
      241 ghdldlyipi ftllqfffya gwlkvaeqli npfgeddddf etnwcidrnl qvsllavdem
      301 hmnlprmekd iywndssarp pytkaaadyc ipsflgstie mgladtefly geewpweeek
      361 hqrrsvlrrv krflsvhegp sspthrhysr qtsensvffp adekghirrl qemhtrgrhs
      421 tssfkkkher adrsnrlqss rdlgpitets rseaqfaegg sdtsseiskp vpeviiseae
      481 eetpdvldkp dlqtehstgi seeklqrslt eanvtlldhp ffppemttyl lgsevhqslp
      541 tvigehkhep qgsniagfit dpernlqrws lpsfhshnra snadavlsst dsettsqqrt
      601 ssdgknvaaa gletfemqhl wenlesketd ivefsnekte rkl
//
LOCUS       XP_053941185             642 aa            linear   VRT 09-MAR-2023
DEFINITION  bestrophin-3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053941185
VERSION     XP_053941185.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085210.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..642
                     /product="bestrophin-3 isoform X3"
                     /calculated_mol_wt=74258
     Region          8..287
                     /region_name="Bestrophin"
                     /note="RFP-TM, chloride channel; pfam01062"
                     /db_xref="CDD:460047"
     CDS             1..642
                     /gene="BEST3"
                     /coded_by="XM_054085210.1:170..2098"
                     /db_xref="GeneID:104063862"
ORIGIN      
        1 mtvtysskva natffgfhrl llkwkgsiyk llyrefivfa tlytaisvly rffltgsqkr
       61 ffeklsiycd kyaeqipvtf vlgfyvtlvv nrwwnqfvnl pwpdrlmfli sscvqgrdey
      121 grllrrtlmr yvnltsllif rsvstavykr fptmdhvvga gfmtryerki fdelksphlk
      181 ywvpfvwfgn laskarkegr irdsvdlqtl mnvvtlavyt fffacligrq fldtdqgyqg
      241 hdldlyipif tllqfffyag wlkvaeqlin pfgeddddfe tnwcidrnlq vsllavdemh
      301 mnlprmekdi ywndssarpp ytkaaadyci psflgstiem gladteflyg eewpweeekh
      361 qrrsvlrrvk rflsvhegps spthrhysrq tsensvffpa dekghirrlq emhtrgrhst
      421 ssfkkkhera drsnrlqssr dlgpitetsr seaqfaeggs dtsseiskpv peviiseaee
      481 etpdvldkpd lqtehstgis eeklqrslte anvtlldhpf fppemttyll gsevhqslpt
      541 vigehkhepq gsniagfitd pernlqrwsl psfhshnras nadavlsstd settsqqrts
      601 sdgknvaaag letfemqhlw enlesketdi vefsnekter kl
//
LOCUS       XP_053941195             562 aa            linear   VRT 09-MAR-2023
DEFINITION  bestrophin-3 isoform X4 [Cuculus canorus].
ACCESSION   XP_053941195
VERSION     XP_053941195.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085220.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..562
                     /product="bestrophin-3 isoform X4"
                     /calculated_mol_wt=64695
     Region          <8..207
                     /region_name="Bestrophin"
                     /note="RFP-TM, chloride channel; pfam01062"
                     /db_xref="CDD:460047"
     CDS             1..562
                     /gene="BEST3"
                     /coded_by="XM_054085220.1:257..1945"
                     /db_xref="GeneID:104063862"
ORIGIN      
        1 mflisscvqg rdeygrllrr tlmryvnlts llifrsvsta vykrfptmdh vvgagfmtry
       61 erkifdelks phlkywvpfv wfgnlaskar kegrirdsvd lqtlmnemnk yrswcsllfg
      121 ydwvgiplvy tqvvtlavyt fffacligrq fldtdqgyqg hdldlyipif tllqfffyag
      181 wlkvaeqlin pfgeddddfe tnwcidrnlq vsllavdemh mnlprmekdi ywndssarpp
      241 ytkaaadyci psflgstiem gladteflyg eewpweeekh qrrsvlrrvk rflsvhegps
      301 spthrhysrq tsensvffpa dekghirrlq emhtrgrhst ssfkkkhera drsnrlqssr
      361 dlgpitetsr seaqfaeggs dtsseiskpv peviiseaee etpdvldkpd lqtehstgis
      421 eeklqrslte anvtlldhpf fppemttyll gsevhqslpt vigehkhepq gsniagfitd
      481 pernlqrwsl psfhshnras nadavlsstd settsqqrts sdgknvaaag letfemqhlw
      541 enlesketdi vefsnekter kl
//
LOCUS       XP_053941204             562 aa            linear   VRT 09-MAR-2023
DEFINITION  bestrophin-3 isoform X4 [Cuculus canorus].
ACCESSION   XP_053941204
VERSION     XP_053941204.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085229.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..562
                     /product="bestrophin-3 isoform X4"
                     /calculated_mol_wt=64695
     Region          <8..207
                     /region_name="Bestrophin"
                     /note="RFP-TM, chloride channel; pfam01062"
                     /db_xref="CDD:460047"
     CDS             1..562
                     /gene="BEST3"
                     /coded_by="XM_054085229.1:317..2005"
                     /db_xref="GeneID:104063862"
ORIGIN      
        1 mflisscvqg rdeygrllrr tlmryvnlts llifrsvsta vykrfptmdh vvgagfmtry
       61 erkifdelks phlkywvpfv wfgnlaskar kegrirdsvd lqtlmnemnk yrswcsllfg
      121 ydwvgiplvy tqvvtlavyt fffacligrq fldtdqgyqg hdldlyipif tllqfffyag
      181 wlkvaeqlin pfgeddddfe tnwcidrnlq vsllavdemh mnlprmekdi ywndssarpp
      241 ytkaaadyci psflgstiem gladteflyg eewpweeekh qrrsvlrrvk rflsvhegps
      301 spthrhysrq tsensvffpa dekghirrlq emhtrgrhst ssfkkkhera drsnrlqssr
      361 dlgpitetsr seaqfaeggs dtsseiskpv peviiseaee etpdvldkpd lqtehstgis
      421 eeklqrslte anvtlldhpf fppemttyll gsevhqslpt vigehkhepq gsniagfitd
      481 pernlqrwsl psfhshnras nadavlsstd settsqqrts sdgknvaaag letfemqhlw
      541 enlesketdi vefsnekter kl
//
LOCUS       XP_009564548             405 aa            linear   VRT 09-MAR-2023
DEFINITION  cathepsin E isoform X1 [Cuculus canorus].
ACCESSION   XP_009564548
VERSION     XP_009564548.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566253.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564548.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..405
                     /product="cathepsin E isoform X1"
                     /calculated_mol_wt=45474
     Region          19..45
                     /region_name="A1_Propeptide"
                     /note="A1 Propeptide; pfam07966"
                     /db_xref="CDD:462326"
     Region          75..397
                     /region_name="pepsin_retropepsin_like"
                     /note="Cellular and retroviral pepsin-like aspartate
                     proteases; cl11403"
                     /db_xref="CDD:472175"
     Site            order(99,101,103,139..141,187)
                     /site_type="active"
                     /note="inhibitor binding site [active]"
                     /db_xref="CDD:133157"
     Site            99..101
                     /site_type="active"
                     /note="catalytic motif [active]"
                     /db_xref="CDD:133157"
     Site            99
                     /site_type="active"
                     /note="Catalytic residue [active]"
                     /db_xref="CDD:133157"
     Site            order(139..142,146..149)
                     /site_type="active"
                     /note="Active site flap [active]"
                     /db_xref="CDD:133157"
     CDS             1..405
                     /gene="LOC104063965"
                     /coded_by="XM_009566253.2:39..1256"
                     /db_xref="GeneID:104063965"
ORIGIN      
        1 mrvillavvy isftvaveri plirfksikk qlrengelee fwrnhhpdvf arrylhcfpe
       61 dislsvgtas erlydymnaq yygvvsvgtp pqrftvvfdt gssnfwvpsa yciseacrvh
      121 qkfksfqsds yehggeafsl qygtgqllgi agketlqisn isikgqdfge svfepgmtfa
      181 lahfdgvlgl gypslavgna lpvfdsimnq elveepvfsf ylkrgddien ggelilggid
      241 hslykgsihw vpvteksywq ihlnnikiqg rvefcshgce aivdsgtsli tgpssqirrl
      301 qehigaspsh tgeflidcrr lsslphisft ighheyklta eqyiikesie dqtfcmsgfq
      361 sldittrngp lwilgdvfms vfycifdrgn drvgfakavh kkdyn
//
LOCUS       XP_053941219             329 aa            linear   VRT 09-MAR-2023
DEFINITION  cathepsin E isoform X2 [Cuculus canorus].
ACCESSION   XP_053941219
VERSION     XP_053941219.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085244.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..329
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..329
                     /product="cathepsin E isoform X2"
                     /calculated_mol_wt=36408
     Region          1..321
                     /region_name="pepsin_retropepsin_like"
                     /note="Cellular and retroviral pepsin-like aspartate
                     proteases; cl11403"
                     /db_xref="CDD:472175"
     Site            order(23,25,27,63..65,111)
                     /site_type="active"
                     /note="inhibitor binding site [active]"
                     /db_xref="CDD:133157"
     Site            23..25
                     /site_type="active"
                     /note="catalytic motif [active]"
                     /db_xref="CDD:133157"
     Site            23
                     /site_type="active"
                     /note="Catalytic residue [active]"
                     /db_xref="CDD:133157"
     Site            order(63..66,70..73)
                     /site_type="active"
                     /note="Active site flap [active]"
                     /db_xref="CDD:133157"
     CDS             1..329
                     /gene="LOC104063965"
                     /coded_by="XM_054085244.1:293..1282"
                     /db_xref="GeneID:104063965"
ORIGIN      
        1 mnaqyygvvs vgtppqrftv vfdtgssnfw vpsaycisea crvhqkfksf qsdsyehgge
       61 afslqygtgq llgiagketl qisnisikgq dfgesvfepg mtfalahfdg vlglgypsla
      121 vgnalpvfds imnqelveep vfsfylkrgd dienggelil ggidhslykg sihwvpvtek
      181 sywqihlnni kiqgrvefcs hgceaivdsg tslitgpssq irrlqehiga spshtgefli
      241 dcrrlsslph isftighhey kltaeqyiik esiedqtfcm sgfqslditt rngplwilgd
      301 vfmsvfycif drgndrvgfa kavhkkdyn
//
LOCUS       XP_009559385             265 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear receptor subfamily 0 group B member 1 [Cuculus canorus].
ACCESSION   XP_009559385
VERSION     XP_009559385.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009561090.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009559385.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..265
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..265
                     /product="nuclear receptor subfamily 0 group B member 1"
                     /calculated_mol_wt=29525
     Region          44..259
                     /region_name="NR_LBD_Dax1"
                     /note="The ligand binding domain of DAX1 protein, a
                     nuclear receptor lacking DNA binding domain; cd07350"
                     /db_xref="CDD:132764"
     Site            order(60..61,65,99,103,106,121,153)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:132764"
     Site            order(70,73,77,82,87..88,90..91,94..95,254,257)
                     /site_type="active"
                     /note="putative coactivator recognition site [active]"
                     /db_xref="CDD:132764"
     Site            order(78..81,83..84,86,192..194,201)
                     /site_type="other"
                     /note="heterotrimer interface [polypeptide binding]"
                     /db_xref="CDD:132764"
     CDS             1..265
                     /gene="NR0B1"
                     /coded_by="XM_009561090.2:92..889"
                     /db_xref="GeneID:104059419"
ORIGIN      
        1 macaercrcc aesrrhgsil ysilrseera aspagprrwq tsrgcpcgsr rrlslrspqv
       61 ackaasavlv ktlrfvqnvp cfqelpldeq lllvrgcwap llvlglaqdr vhfetvesae
      121 psmlqrilst rrqgepppgr aqrgahllaa geiqtikgfq akcwnldist keyaylkgtv
      181 lfnphlpglq ctqyieglqr eaqqalnehv rlihrgdear faklnvvlsl lrsinanvia
      241 elffrpiiga vnmddmllem lcakl
//
LOCUS       XP_053941262            1098 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich repeats and immunoglobulin-like domains protein 3
            [Cuculus canorus].
ACCESSION   XP_053941262
VERSION     XP_053941262.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085287.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1098
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1098
                     /product="leucine-rich repeats and immunoglobulin-like
                     domains protein 3"
                     /calculated_mol_wt=120986
     Region          25..52
                     /region_name="LRRNT"
                     /note="Leucine rich repeat N-terminal domain; smart00013"
                     /db_xref="CDD:214470"
     Region          <53..>283
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          57..77
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          78..100
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          101..124
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          125..144
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          148..172
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          173..195
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          196..219
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          220..243
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          244..267
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          268..291
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          290..350
                     /region_name="LRR_8"
                     /note="Leucine rich repeat; pfam13855"
                     /db_xref="CDD:404697"
     Region          292..315
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          316..339
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          340..364
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          366..421
                     /region_name="LRR_8"
                     /note="Leucine rich repeat; pfam13855"
                     /db_xref="CDD:404697"
     Region          367..390
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          391..414
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          395..>473
                     /region_name="PCC"
                     /note="polycystin cation channel protein; TIGR00864"
                     /db_xref="CDD:188093"
     Region          477..564
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     Region          583..673
                     /region_name="IgI_LRIG1-like"
                     /note="Immunoglobulin (Ig)-like ectodomain of the LRIG1
                     (Leucine-rich Repeats And Immunoglobulin-like Domains
                     Protein 1) and similar proteins; member of the I-set of
                     IgSF domains; cd05763"
                     /db_xref="CDD:409420"
     Region          583..586
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409420"
     Region          590..594
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409420"
     Region          597..606
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409420"
     Region          612..617
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409420"
     Region          620..622
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409420"
     Region          630..634
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409420"
     Region          638..645
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409420"
     Region          651..659
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409420"
     Region          662..673
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409420"
     Region          676..763
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          693..697
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          706..710
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          729..733
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          743..748
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..1098
                     /gene="LRIG3"
                     /coded_by="XM_054085287.1:185..3481"
                     /db_xref="GeneID:104062609"
ORIGIN      
        1 mpraapaall alllpllgag grarcpapcr caarlvacsr lepsrlpqrl prgavqldls
       61 hnklssikts lldhlhnlre vklnnnelei vpdlgpvsan itllslagnk iasissehlk
      121 pfqsletldl snnniselki ssfpslplkn lyinsnrits mepgtfdnls ttlqvlklnr
      181 nkisavpqkm fklshlqhle lnrnrikkid gltfqglpal kslklqrngv trlmdgafwg
      241 ltnmevlqld hnnltevtkg wlygllmlqq lhlsqnaisr ispdawefcq klseldltfn
      301 hlarlddssf vglsvlvgly ignnkvnyia dcafrglssl qtldlknnei swtiedmnga
      361 fsgldklrkl llqgnrirsi tkkafsglda lehldlsnna imsvqgnafs qmkklkelhl
      421 ntssllcdcq lkwlpqwmse nnfqsfvnas cahpqllkgr sifavsldgf vcddfpkpqi
      481 tvqpetqsai kgsnlsfvcs aasssdspmt fawkkdnell qdaemenyah lraqggevme
      541 yttvlrlrnv efsnegkyqc visnhfgssy svkakltvnm lpsftkipmd ltiragamar
      601 lecaavghpv pqiawqkdgg tdfpaarkrr mhvmpeddvf fivdvkiedt gvysctaqnt
      661 agsisanatl tvletpsflr plldrtvtkg etavlqciag gsppprlnwt kddsplivte
      721 rhffaagnql liivdtdved agkytcemsn tlgtergnir lnviptptcd spqniapsld
      781 ddgwatvgiv iiavvccvvg tslvwvviiy htrrrnedcs itntdetnlp adipsylssq
      841 gtlaerqdgy gssengshhq fftssmggyf lqqrdsngic hldnssetdl dggadpflsh
      901 ylgtsgtlyl kgstygseaf eaysascspd qrtacldpye pgylkrkecy qysppledpf
      961 dpcvgiigmq ttsskltnsi ytqnegtglk srslnsdtfd cnrsldpssv ishstfmrtf
     1021 gkplwrpqld slsscrqpan cqpkpshnnp hasldfyaea dedgkertvs sgensiytyk
     1081 qsfenfrtst fqscdadt
//
LOCUS       XP_053941270             224 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128854189 [Cuculus canorus].
ACCESSION   XP_053941270
VERSION     XP_053941270.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085295.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..224
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..224
                     /product="uncharacterized protein LOC128854189"
                     /calculated_mol_wt=25502
     CDS             1..224
                     /gene="LOC128854189"
                     /coded_by="XM_054085295.1:202..876"
                     /db_xref="GeneID:128854189"
ORIGIN      
        1 mwagrtdsts lsplqmrgrm agklpggegp ggvgcrrlnm sqqcaqvakk angilvcirn
       61 gvtsrsrevi lpldsalvrp hfeycvrfwa phhkkdveal ecvqrravkl vmglenksye
      121 eqlrelglfs lekrrlrgnl ialynylkrg creegadlfs qligyrtrgn glkmrqgmfs
      181 ldirkkifie rvighwnrlp revvecpsle vfkrcvdevl rdmi
//
LOCUS       XP_053941292             778 aa            linear   VRT 09-MAR-2023
DEFINITION  LON peptidase N-terminal domain and RING finger protein 2 [Cuculus
            canorus].
ACCESSION   XP_053941292
VERSION     XP_053941292.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085317.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..778
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..778
                     /product="LON peptidase N-terminal domain and RING finger
                     protein 2"
                     /calculated_mol_wt=86512
     Region          136..178
                     /region_name="RING-HC_LONFs_rpt1"
                     /note="first RING finger, HC subclass, found in the LON
                     peptidase N-terminal domain and RING finger protein
                     family; cd16513"
                     /db_xref="CDD:438176"
     Region          <211..317
                     /region_name="TadD"
                     /note="Flp pilus assembly protein TadD, contains TPR
                     repeats [Intracellular trafficking, secretion, and
                     vesicular transport, Extracellular structures]; COG5010"
                     /db_xref="CDD:444034"
     Region          218..246
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(219,222..223,226..227,229,253,256..257,260..261,
                     263..264,287,290..291,294..295,298)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          251..281
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          286..309
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          482..526
                     /region_name="RING-HC_LONFs_rpt2"
                     /note="second RING finger, HC subclass, found in the LON
                     peptidase N-terminal domain and RING finger protein
                     family; cd16514"
                     /db_xref="CDD:438177"
     Region          583..769
                     /region_name="LON/PUA"
                     /note="Uncharacterized conserved protein, LON_N-like
                     domain, ASCH/PUA-like superfamily [Function unknown];
                     COG2802"
                     /db_xref="CDD:442054"
     CDS             1..778
                     /gene="LONRF2"
                     /coded_by="XM_054085317.1:71..2407"
                     /db_xref="GeneID:104056700"
ORIGIN      
        1 melgagppag pgpaggpprs emlqvaeeaf rggnfelaae iygselsgla qperelclrr
       61 aaalaragrm aealdaygaa arlarlrpee lrdlaesfal sirdkelrlp prggaggsgg
      121 aegdglgdpa ccrppepfac plcrrllcep vtlrcghthc rrcaehgdca rchrarrhae
      181 gtpaapssss spspaarprv nvvlcnllhk wfgaesrarr lraegdalre rqelaaalek
      241 ynqalemasc kcsltaqrae lcmsmknyqq alhdadvlcr nkphwpmghy vkakalsgle
      301 rteealkefl ycvalnpews smkkeaqkim cemffpafen vhdsltapfs srtshtrlkp
      361 aflssintqs aaedssiags skdtvfrltk tpsqesdvfr stdspishhv ldlyfednkk
      421 slgailsslp gvglkrklss dmrdlqsldv pskipkkdad vlpentvias gevpatlvda
      481 sdfecslcmr lfyepvttpc ghtfclkcle rcldhnphcp lckeklsefl asrtykktvl
      541 teelivrylp delserkkvy eeemkelsnl nkdvpifvct mafptipcpl hvfepryrlm
      601 irrcmetgtk qfgmcladel kgfadhgcil eirdvkffpd grsvvdtvgv rrfrvlshgq
      661 rdgyntanie yledkkvegp eyeelvrlhd svydqavawf tslkdnmkaq ilnhfgsmpg
      721 kepepqsnps gpawywwlla vlplenraql ailamtslkd rliairrvlv fvtrkrpr
//
LOCUS       XP_053941306            1023 aa            linear   VRT 09-MAR-2023
DEFINITION  contactin-1 [Cuculus canorus].
ACCESSION   XP_053941306
VERSION     XP_053941306.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085331.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1023
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1023
                     /product="contactin-1"
                     /calculated_mol_wt=114164
     Region          45..139
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          66..70
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          79..83
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          101..105
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          116..121
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          130..133
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          147..235
                     /region_name="Ig2_Contactin-2-like"
                     /note="Second Ig domain of the neural cell adhesion
                     molecule contactin-2, and similar domains; cd05727"
                     /db_xref="CDD:409392"
     Region          149..154
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409392"
     Region          158..164
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409392"
     Site            order(159,190,193,195)
                     /site_type="other"
                     /note="domain-domain interface [polypeptide binding]"
                     /db_xref="CDD:409392"
     Region          173..179
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409392"
     Region          184..186
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409392"
     Region          191..196
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409392"
     Region          199..203
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409392"
     Region          213..221
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409392"
     Region          223..235
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409392"
     Region          245..332
                     /region_name="IgI_3_Contactin-1"
                     /note="Third immunoglobulin (Ig) domain of contactin-1;
                     member of the I-set of Ig superfamily (IgSF) domains;
                     cd05851"
                     /db_xref="CDD:143259"
     Region          245..250
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:143259"
     Region          253..258
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:143259"
     Region          261..270
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:143259"
     Site            order(266,268..272,274)
                     /site_type="other"
                     /note="interdomain interface [polypeptide binding]"
                     /db_xref="CDD:143259"
     Region          276..280
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:143259"
     Site            283..290
                     /site_type="other"
                     /note="dimerization loop"
                     /db_xref="CDD:143259"
     Region          283..285
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:143259"
     Region          293..296
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:143259"
     Region          297..302
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:143259"
     Region          310..318
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:143259"
     Region          321..332
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:143259"
     Region          336..412
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          352..356
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          365..369
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          378..382
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          392..397
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          405..408
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          417..505
                     /region_name="Ig5_Contactin-1"
                     /note="Fifth immunoglobulin (Ig) domain of contactin-1;
                     cd05852"
                     /db_xref="CDD:409438"
     Region          417..422
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409438"
     Region          425..430
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409438"
     Region          434..441
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409438"
     Region          449..453
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409438"
     Region          467..470
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409438"
     Region          471..476
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409438"
     Region          484..492
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409438"
     Region          498..505
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409438"
     Region          507..605
                     /region_name="Ig6_Contactin"
                     /note="Sixth immunoglobulin (Ig) domain of contactin;
                     cd04970"
                     /db_xref="CDD:409359"
     Region          507..513
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409359"
     Region          516..521
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409359"
     Region          524..532
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409359"
     Region          541..545
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409359"
     Region          566..569
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409359"
     Region          570..574
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409359"
     Region          583..590
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409359"
     Region          597..601
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409359"
     Region          <654..976
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          816..897
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(893..894,896..897)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1023
                     /gene="CNTN1"
                     /coded_by="XM_054085331.1:287..3358"
                     /db_xref="GeneID:104062418"
ORIGIN      
        1 mlasqgiipf eiiteqkitm wlfiyylvtp sfifclseeg nkgygpvfee qpidtiypee
       61 ssdgqvsmnc raraipfpty rwklnnwdid ltkerysmvg grlvinnpek srdagkyvcv
      121 vsnifgtvrs seatlsfgyl dpfppeerye vkvregvgav llceppyhyp ddlsyrwlln
      181 efpvfitldk rrfvsqtngn lyianveasd kgnyscfvss psitksvfsk fiplipqsdr
      241 akvypadikv kfkdtyallg qnvtlecfal gnpvpelrws kylepmpata eismsgavlk
      301 ifniqyedeg lyeceaenyk gkdkhqariy vqaspewveh indtekdigs dlywpcvatg
      361 kpiptirwlk ngvsfrkgel rlqsltfdda gmyqciaent hgiiyanael kivaspptfe
      421 lnpmkkkila akggrviiec kpkaapkpkf swskgtellv ngsririwdd gsleiinitk
      481 ldegrytcfa ennrgkanst gvlemteatr itlaplnvdv tvgenatmqc iashdptldl
      541 tfiwslngfv idfekehehy ernvmiksng elliknvqlr hagrytctaq tivdnssasa
      601 dlvvrgppgp pggirveeir dtavaltwsr gtdnhspisk ytiqsktfls eewkdaktep
      661 sdiegnmesa rvidlipwme yefriiatnt lgtgepsmps qrirtegapp nvapsdvggg
      721 ggsnreltit wmplsreyhy gnnfgyivaf kpfgekewrr vtvtnpeigr yvhkdesmpp
      781 stqyqvkvka fnnkgdgpfs ltaviysaqd apteiptdvs ikvlsssems vswhhvsdks
      841 vegyqirywa ahdkeaaaqr vqvsnqeyst klenlkpntr yyvdvsafns agygppsrti
      901 dtvtrkapps qrpriissvr sgsryiitwd hvkaksnesa vegykvlyrp dgqhegklfs
      961 tgkhtievpv psdgeyvvev rahseggdge vaqikisgat agvptlllvl vvptlgvlac
     1021 lgf
//
LOCUS       XP_053941326            1116 aa            linear   VRT 09-MAR-2023
DEFINITION  sterol regulatory element-binding protein 2 [Cuculus canorus].
ACCESSION   XP_053941326
VERSION     XP_053941326.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085351.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1116
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1116
                     /product="sterol regulatory element-binding protein 2"
                     /calculated_mol_wt=121211
     Region          <132..271
                     /region_name="SP1-4_N"
                     /note="N-terminal domain of transcription factor
                     Specificity Proteins (SP) 1-4; cl41773"
                     /db_xref="CDD:425404"
     Region          301..377
                     /region_name="bHLHzip_SREBP2"
                     /note="basic Helix-Loop-Helix-zipper (bHLHzip) domain
                     found in sterol regulatory element-binding protein 2
                     (SREBP2) and similar proteins; cd18922"
                     /db_xref="CDD:381492"
     Site            order(301,307,309..311,313..314,316..318,322,340..341)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381492"
     Site            order(317,320..321,324..325,327..328,331,341..342,
                     345..346,349,351..353,355..356,358..359,362..363,365..366,
                     369..370,373)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381492"
     CDS             1..1116
                     /gene="SREBF2"
                     /coded_by="XM_054085351.1:90..3440"
                     /db_xref="GeneID:104055488"
ORIGIN      
        1 meggelgves meslaelgde ltlgdideml qfvsnqagdf pdlfsdqlcg tfqgssssts
       61 sggtlepqlq rpysqvqlqp fpppaaspql qtlpvkapqa tppapprsap llqprpplqp
      121 qlqqqavmit ptfssapqtr iiqqpviyqn aatsfqvlqp qvqslvtssq vqpvaiqqpv
      181 qtvqaqrvlt qaangtiqal apatvqtvaa sqvqqvpvlv qpqiiktdsl vlttlktdgn
      241 pvmaavqnpa ltaltapiqt talqtlvgsn gtilttmpvm vgqekvpikq vpggvkqpep
      301 pkegerrtth niiekryrss indkiielkd lvmgtdakmh ksgvlrkaid yikylqqanh
      361 klrqenmvlk lanqknkllk gidlsslvdn dvdlkiddfn qnvllmsppa sdsgsqagfs
      421 pysidsepgs pllddakvkd epdsppvalg mvdrsrmllc altflclsfn pltslldarg
      481 tpesdslvrh ssgrnmltie sdaggwfgwm iptlilwlvn gvivlsvfik llvhgepvtr
      541 lhsrssvtfw rhrkqadldl argdfaaaas nlqtclsvlg ralpasrldl acslswnvir
      601 yslqklalvr wllkrtshqw rareatagse deaktsarda alayhklhql hitgklpsss
      661 aysglhmalc avnlaecaee kippstmaei hltaavglkt rcggklgfla syflsqaqsl
      721 cssersaipd slrwlchplg qkffverswt vksaakesly ctqrnpadpi aqvhqafcen
      781 lleravdslv kpqtrkeivg qeeeepcefs sameylklln sfldsmgsga ppfagnsvlk
      841 savgpdvvcr wwsaavtmai gwlrgddtav rshfaeverm pkslemsena lvkatfyvck
      901 amqaslpgka dgqqsslghc erasshlwns lnmtsgvsst vlnnmiqlla cdlllslrts
      961 lwqkqanasq algetyhasa seltgfqrdl gslrklahgf rpayrkvflh eatvrlmaga
     1021 sptrthqlle hslrrrtpqs skqgeldtlp gqreratail lacrhlpisf lsspgqravl
     1081 laeaartlek vgdkrscndc qqmivklsgg taiaas
//
LOCUS       XP_053941337             256 aa            linear   VRT 09-MAR-2023
DEFINITION  myogenic factor 5 [Cuculus canorus].
ACCESSION   XP_053941337
VERSION     XP_053941337.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085362.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..256
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..256
                     /product="myogenic factor 5"
                     /calculated_mol_wt=28043
     Region          1..88
                     /region_name="BASIC"
                     /note="Basic domain in HLH proteins of MYOD family;
                     smart00520"
                     /db_xref="CDD:128794"
     Region          83..146
                     /region_name="bHLH_TS_Myf5"
                     /note="basic helix-loop-helix (bHLH) domain found in
                     myogenic factor 5 (Myf-5) and similar proteins; cd18937"
                     /db_xref="CDD:381507"
     Site            order(84..85,89,91..93,95,100,117..120)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381507"
     Site            order(98..99,102..103,105..106,121,124,128,130..131,135,
                     137..138)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381507"
     Region          143..215
                     /region_name="Myf5"
                     /note="Myogenic determination factor 5; pfam12232"
                     /db_xref="CDD:463500"
     CDS             1..256
                     /gene="MYF5"
                     /coded_by="XM_054085362.1:354..1124"
                     /db_xref="GeneID:104061160"
ORIGIN      
        1 mevmdrcqfs pselfydssc lsspegdfpe dfeprdlppf gahepsepse eeehvraptg
       61 hhqaghclmw ackackrkst tmdrrkaatm rerrrlkkvn qafetlkrct tanpnqrlpk
      121 veilrnairy ieslqellre qvenyyhlpg qscseptspt sscsdgmadc gspawaargs
      181 gfdavycseg ahgyaseqss alssldclss ivdrlspaqe pglplrdads lspsasidsg
      241 pgtpgttppr rtyqal
//
LOCUS       XP_053941346            1738 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium leak channel NALCN isoform X1 [Cuculus canorus].
ACCESSION   XP_053941346
VERSION     XP_053941346.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085371.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1738
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1738
                     /product="sodium leak channel NALCN isoform X1"
                     /calculated_mol_wt=200219
     Region          36..331
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          383..603
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          887..1161
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1209..1458
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..1738
                     /gene="NALCN"
                     /coded_by="XM_054085371.1:225..5441"
                     /db_xref="GeneID:104060254"
ORIGIN      
        1 mlkrkqssrv eaqpvtdfgp deslsdnadi lwinkpwvhs llricaiisv isvcmntpkt
       61 fehypplqyv tfaldtllmf lytaemiakm hirgivkgdt syvkdrwcvf dgfmvfclwv
      121 slvlqvfeia elvdqmspwg mlriprplim irafriyfrf elprtritni lkrsgeqiws
      181 vsifllffll lygilgvqmf gtftyhcvtd dtqpgnvtwn nlaipdthcs releegyqcp
      241 pgfkcmdleh lglsrqelgy sgfneigtsi ftvyeaasqe gwvflmyrai dsfprwrsyf
      301 yfitliffla wlvknvfiav iietfaeirv qfqqmwgsrs sttstattqm fhedaaggwq
      361 lvavdvnkpq grapaclqkm mrssvfhmfi lsmvavdviv aasnyykgen fkrqydefyl
      421 aevaftvlfd leallkiwcl gftgyisssl hkfelllvig ttlhiypdly hsqftyfqvl
      481 rvvrlikisp aledfvykif gpgkklgslv vftasllivm saislqmfcf veeldrfttf
      541 prafmsmfqi ltqegwvdvm dqtlnavghm wapvvaiyfi lyhlfatlil lslfvavild
      601 nleldedlkk lkqlkqsean adtkeklplr lrifekfpnr pqmvkisklp sdftvpkire
      661 sfmkqfidrq qqdtscllrr lpsasssscd hskksaieen kyidqklrks vfsirarnll
      721 eketainkil ractrqrmls gsfegqpake rsilsvqhhi rqerrslrhg snsqrisrgk
      781 sletltqdhs ntvryrnaqr edseikmiqe kkeqaemkrk vqeeelrenh pyfdkplfiv
      841 grehkfrnfc rvvvrarfna sktdpvtgav kntkyhqlyd llglvtyldw vmiivticsc
      901 ismmfespfr rvmhaptlqi aeyvfvifms ielnlkimad glfftptavi rdfggvmdif
      961 iylvsliflc wmpqnvpaks gaqllmvlrc lrplrifklv pqmrkvvrel fsgfkeiflv
     1021 sillltlmlv fasfgvqlfa gklakcndph iisredchgi frinvsvskn lnlklrpgek
     1081 kpgfwvprvw anprnfnfdn vgnamlalfe vlslkgwvev rdviihrvgp ihgiyihvfv
     1141 flgcmigltl fvgvvianfn enkgtalltv dqrrwedlks rlkiaqplhl pprpdndgfr
     1201 akmyditqhp ffkrtiavlv laqsvllsvk wdaadpvtvp latmsvvftf ifvlevtmki
     1261 iamspsgfwq srrnrydllv tslgviwvil hfallnayty mmgacvivfr ffsicgkhvt
     1321 lkmllltvvv smyksffiiv gmfllllcya fagvvlfgtv kygeninrha nfssagkait
     1381 vlfrivtged wnkimhdcmv qppfctpdns tywktdcgny agalmyfcsf yviiayimln
     1441 llvaiivenf slfysteedq llsyndlrhf qiiwnmvddk regvipsfrv kfllrllrgr
     1501 levdldkdkl lfkhmcyeme rlhnggdvtf hdvlsmlsyr svdirkslql eellareqle
     1561 ytieeevakq tirmwlkkcl krirakqqqs csiihslres qqqelsrfln ppsiettqps
     1621 edmnainqdn saqpetssqq qllsptlsdr ggyrqdsada gkpqrkfgqw rlpsapkpis
     1681 hsvssvnlrf ggrstmksvv ckmnpmsdaa scgsevkkww trqltvesde sgedlldi
//
LOCUS       XP_053941356            1738 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium leak channel NALCN isoform X1 [Cuculus canorus].
ACCESSION   XP_053941356
VERSION     XP_053941356.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085381.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1738
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1738
                     /product="sodium leak channel NALCN isoform X1"
                     /calculated_mol_wt=200219
     Region          36..331
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          383..603
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          887..1161
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1209..1458
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..1738
                     /gene="NALCN"
                     /coded_by="XM_054085381.1:229..5445"
                     /db_xref="GeneID:104060254"
ORIGIN      
        1 mlkrkqssrv eaqpvtdfgp deslsdnadi lwinkpwvhs llricaiisv isvcmntpkt
       61 fehypplqyv tfaldtllmf lytaemiakm hirgivkgdt syvkdrwcvf dgfmvfclwv
      121 slvlqvfeia elvdqmspwg mlriprplim irafriyfrf elprtritni lkrsgeqiws
      181 vsifllffll lygilgvqmf gtftyhcvtd dtqpgnvtwn nlaipdthcs releegyqcp
      241 pgfkcmdleh lglsrqelgy sgfneigtsi ftvyeaasqe gwvflmyrai dsfprwrsyf
      301 yfitliffla wlvknvfiav iietfaeirv qfqqmwgsrs sttstattqm fhedaaggwq
      361 lvavdvnkpq grapaclqkm mrssvfhmfi lsmvavdviv aasnyykgen fkrqydefyl
      421 aevaftvlfd leallkiwcl gftgyisssl hkfelllvig ttlhiypdly hsqftyfqvl
      481 rvvrlikisp aledfvykif gpgkklgslv vftasllivm saislqmfcf veeldrfttf
      541 prafmsmfqi ltqegwvdvm dqtlnavghm wapvvaiyfi lyhlfatlil lslfvavild
      601 nleldedlkk lkqlkqsean adtkeklplr lrifekfpnr pqmvkisklp sdftvpkire
      661 sfmkqfidrq qqdtscllrr lpsasssscd hskksaieen kyidqklrks vfsirarnll
      721 eketainkil ractrqrmls gsfegqpake rsilsvqhhi rqerrslrhg snsqrisrgk
      781 sletltqdhs ntvryrnaqr edseikmiqe kkeqaemkrk vqeeelrenh pyfdkplfiv
      841 grehkfrnfc rvvvrarfna sktdpvtgav kntkyhqlyd llglvtyldw vmiivticsc
      901 ismmfespfr rvmhaptlqi aeyvfvifms ielnlkimad glfftptavi rdfggvmdif
      961 iylvsliflc wmpqnvpaks gaqllmvlrc lrplrifklv pqmrkvvrel fsgfkeiflv
     1021 sillltlmlv fasfgvqlfa gklakcndph iisredchgi frinvsvskn lnlklrpgek
     1081 kpgfwvprvw anprnfnfdn vgnamlalfe vlslkgwvev rdviihrvgp ihgiyihvfv
     1141 flgcmigltl fvgvvianfn enkgtalltv dqrrwedlks rlkiaqplhl pprpdndgfr
     1201 akmyditqhp ffkrtiavlv laqsvllsvk wdaadpvtvp latmsvvftf ifvlevtmki
     1261 iamspsgfwq srrnrydllv tslgviwvil hfallnayty mmgacvivfr ffsicgkhvt
     1321 lkmllltvvv smyksffiiv gmfllllcya fagvvlfgtv kygeninrha nfssagkait
     1381 vlfrivtged wnkimhdcmv qppfctpdns tywktdcgny agalmyfcsf yviiayimln
     1441 llvaiivenf slfysteedq llsyndlrhf qiiwnmvddk regvipsfrv kfllrllrgr
     1501 levdldkdkl lfkhmcyeme rlhnggdvtf hdvlsmlsyr svdirkslql eellareqle
     1561 ytieeevakq tirmwlkkcl krirakqqqs csiihslres qqqelsrfln ppsiettqps
     1621 edmnainqdn saqpetssqq qllsptlsdr ggyrqdsada gkpqrkfgqw rlpsapkpis
     1681 hsvssvnlrf ggrstmksvv ckmnpmsdaa scgsevkkww trqltvesde sgedlldi
//
LOCUS       XP_053941363            1719 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium leak channel NALCN isoform X2 [Cuculus canorus].
ACCESSION   XP_053941363
VERSION     XP_053941363.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085388.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1719
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1719
                     /product="sodium leak channel NALCN isoform X2"
                     /calculated_mol_wt=198087
     Region          36..331
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          383..603
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          868..1142
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1190..1439
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..1719
                     /gene="NALCN"
                     /coded_by="XM_054085388.1:225..5384"
                     /db_xref="GeneID:104060254"
ORIGIN      
        1 mlkrkqssrv eaqpvtdfgp deslsdnadi lwinkpwvhs llricaiisv isvcmntpkt
       61 fehypplqyv tfaldtllmf lytaemiakm hirgivkgdt syvkdrwcvf dgfmvfclwv
      121 slvlqvfeia elvdqmspwg mlriprplim irafriyfrf elprtritni lkrsgeqiws
      181 vsifllffll lygilgvqmf gtftyhcvtd dtqpgnvtwn nlaipdthcs releegyqcp
      241 pgfkcmdleh lglsrqelgy sgfneigtsi ftvyeaasqe gwvflmyrai dsfprwrsyf
      301 yfitliffla wlvknvfiav iietfaeirv qfqqmwgsrs sttstattqm fhedaaggwq
      361 lvavdvnkpq grapaclqkm mrssvfhmfi lsmvavdviv aasnyykgen fkrqydefyl
      421 aevaftvlfd leallkiwcl gftgyisssl hkfelllvig ttlhiypdly hsqftyfqvl
      481 rvvrlikisp aledfvykif gpgkklgslv vftasllivm saislqmfcf veeldrfttf
      541 prafmsmfqi ltqegwvdvm dqtlnavghm wapvvaiyfi lyhlfatlil lslfvavild
      601 nleldedlkk lkqlkqsean adtkeklplr lrifekfpnr pqmvkisklp sdftvpkire
      661 sfmkqfidrq qqdtscllrr lpsasssscd hskksaieen kyidqklrks vfsirarnll
      721 eketainkil ractrqrmls gsfegqpake rsilsvqhhi rqerrslrhg snsqrisrgk
      781 sletltqdhs ntvryrnaqr edseikmiqe kkeqaemkrk vqeeelrenh pyfdkplfiv
      841 grehkfrnfc rvvvrarfna dllglvtyld wvmiivtics cismmfespf rrvmhaptlq
      901 iaeyvfvifm sielnlkima dglfftptav irdfggvmdi fiylvslifl cwmpqnvpak
      961 sgaqllmvlr clrplrifkl vpqmrkvvre lfsgfkeifl vsillltlml vfasfgvqlf
     1021 agklakcndp hiisredchg ifrinvsvsk nlnlklrpge kkpgfwvprv wanprnfnfd
     1081 nvgnamlalf evlslkgwve vrdviihrvg pihgiyihvf vflgcmiglt lfvgvvianf
     1141 nenkgtallt vdqrrwedlk srlkiaqplh lpprpdndgf rakmyditqh pffkrtiavl
     1201 vlaqsvllsv kwdaadpvtv platmsvvft fifvlevtmk iiamspsgfw qsrrnrydll
     1261 vtslgviwvi lhfallnayt ymmgacvivf rffsicgkhv tlkmllltvv vsmyksffii
     1321 vgmfllllcy afagvvlfgt vkygeninrh anfssagkai tvlfrivtge dwnkimhdcm
     1381 vqppfctpdn stywktdcgn yagalmyfcs fyviiayiml nllvaiiven fslfysteed
     1441 qllsyndlrh fqiiwnmvdd kregvipsfr vkfllrllrg rlevdldkdk llfkhmcyem
     1501 erlhnggdvt fhdvlsmlsy rsvdirkslq leellareql eytieeevak qtirmwlkkc
     1561 lkrirakqqq scsiihslre sqqqelsrfl nppsiettqp sedmnainqd nsaqpetssq
     1621 qqllsptlsd rggyrqdsad agkpqrkfgq wrlpsapkpi shsvssvnlr fggrstmksv
     1681 vckmnpmsda ascgsevkkw wtrqltvesd esgedlldi
//
LOCUS       XP_053941370            1477 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium leak channel NALCN isoform X3 [Cuculus canorus].
ACCESSION   XP_053941370
VERSION     XP_053941370.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085395.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1477
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1477
                     /product="sodium leak channel NALCN isoform X3"
                     /calculated_mol_wt=169996
     Region          <6..70
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          122..342
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          626..900
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          948..1197
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..1477
                     /gene="NALCN"
                     /coded_by="XM_054085395.1:252..4685"
                     /db_xref="GeneID:104060254"
ORIGIN      
        1 mtrsqgtsif tvyeaasqeg wvflmyraid sfprwrsyfy fitlifflaw lvknvfiavi
       61 ietfaeirvq fqqmwgsrss ttstattqmf hedaaggwql vavdvnkpqg rapaclqkmm
      121 rssvfhmfil smvavdviva asnyykgenf krqydefyla evaftvlfdl eallkiwclg
      181 ftgyissslh kfelllvigt tlhiypdlyh sqftyfqvlr vvrlikispa ledfvykifg
      241 pgkklgslvv ftasllivms aislqmfcfv eeldrfttfp rafmsmfqil tqegwvdvmd
      301 qtlnavghmw apvvaiyfil yhlfatlill slfvavildn leldedlkkl kqlkqseana
      361 dtkeklplrl rifekfpnrp qmvkisklps dftvpkires fmkqfidrqq qdtscllrrl
      421 psasssscdh skksaieenk yidqklrksv fsirarnlle ketainkilr actrqrmlsg
      481 sfegqpaker silsvqhhir qerrslrhgs nsqrisrgks letltqdhsn tvryrnaqre
      541 dseikmiqek keqaemkrkv qeeelrenhp yfdkplfivg rehkfrnfcr vvvrarfnas
      601 ktdpvtgavk ntkyhqlydl lglvtyldwv miivticsci smmfespfrr vmhaptlqia
      661 eyvfvifmsi elnlkimadg lfftptavir dfggvmdifi ylvsliflcw mpqnvpaksg
      721 aqllmvlrcl rplrifklvp qmrkvvrelf sgfkeiflvs illltlmlvf asfgvqlfag
      781 klakcndphi isredchgif rinvsvsknl nlklrpgekk pgfwvprvwa nprnfnfdnv
      841 gnamlalfev lslkgwvevr dviihrvgpi hgiyihvfvf lgcmigltlf vgvvianfne
      901 nkgtalltvd qrrwedlksr lkiaqplhlp prpdndgfra kmyditqhpf fkrtiavlvl
      961 aqsvllsvkw daadpvtvpl atmsvvftfi fvlevtmkii amspsgfwqs rrnrydllvt
     1021 slgviwvilh fallnaytym mgacvivfrf fsicgkhvtl kmllltvvvs myksffiivg
     1081 mfllllcyaf agvvlfgtvk ygeninrhan fssagkaitv lfrivtgedw nkimhdcmvq
     1141 ppfctpdnst ywktdcgnya galmyfcsfy viiayimlnl lvaiivenfs lfysteedql
     1201 lsyndlrhfq iiwnmvddkr egvipsfrvk fllrllrgrl evdldkdkll fkhmcyemer
     1261 lhnggdvtfh dvlsmlsyrs vdirkslqle ellareqley tieeevakqt irmwlkkclk
     1321 rirakqqqsc siihslresq qqelsrflnp psiettqpse dmnainqdns aqpetssqqq
     1381 llsptlsdrg gyrqdsadag kpqrkfgqwr lpsapkpish svssvnlrfg grstmksvvc
     1441 kmnpmsdaas cgsevkkwwt rqltvesdes gedlldi
//
LOCUS       XP_053941376            1453 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium leak channel NALCN isoform X4 [Cuculus canorus].
ACCESSION   XP_053941376
VERSION     XP_053941376.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085401.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1453
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1453
                     /product="sodium leak channel NALCN isoform X4"
                     /calculated_mol_wt=167305
     Region          <1..46
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          98..318
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          602..876
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          924..1173
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..1453
                     /gene="NALCN"
                     /coded_by="XM_054085401.1:165..4526"
                     /db_xref="GeneID:104060254"
ORIGIN      
        1 myraidsfpr wrsyfyfitl ifflawlvkn vfiaviietf aeirvqfqqm wgsrssttst
       61 attqmfheda aggwqlvavd vnkpqgrapa clqkmmrssv fhmfilsmva vdvivaasny
      121 ykgenfkrqy defylaevaf tvlfdleall kiwclgftgy issslhkfel llvigttlhi
      181 ypdlyhsqft yfqvlrvvrl ikispaledf vykifgpgkk lgslvvftas llivmsaisl
      241 qmfcfveeld rfttfprafm smfqiltqeg wvdvmdqtln avghmwapvv aiyfilyhlf
      301 atlillslfv avildnleld edlkklkqlk qseanadtke klplrlrife kfpnrpqmvk
      361 isklpsdftv pkiresfmkq fidrqqqdts cllrrlpsas ssscdhskks aieenkyidq
      421 klrksvfsir arnlleketa inkilractr qrmlsgsfeg qpakersils vqhhirqerr
      481 slrhgsnsqr isrgksletl tqdhsntvry rnaqredsei kmiqekkeqa emkrkvqeee
      541 lrenhpyfdk plfivgrehk frnfcrvvvr arfnasktdp vtgavkntky hqlydllglv
      601 tyldwvmiiv ticscismmf espfrrvmha ptlqiaeyvf vifmsielnl kimadglfft
      661 ptavirdfgg vmdifiylvs liflcwmpqn vpaksgaqll mvlrclrplr ifklvpqmrk
      721 vvrelfsgfk eiflvsilll tlmlvfasfg vqlfagklak cndphiisre dchgifrinv
      781 svsknlnlkl rpgekkpgfw vprvwanprn fnfdnvgnam lalfevlslk gwvevrdvii
      841 hrvgpihgiy ihvfvflgcm igltlfvgvv ianfnenkgt alltvdqrrw edlksrlkia
      901 qplhlpprpd ndgfrakmyd itqhpffkrt iavlvlaqsv llsvkwdaad pvtvplatms
      961 vvftfifvle vtmkiiamsp sgfwqsrrnr ydllvtslgv iwvilhfall naytymmgac
     1021 vivfrffsic gkhvtlkmll ltvvvsmyks ffiivgmfll llcyafagvv lfgtvkygen
     1081 inrhanfssa gkaitvlfri vtgedwnkim hdcmvqppfc tpdnstywkt dcgnyagalm
     1141 yfcsfyviia yimlnllvai ivenfslfys teedqllsyn dlrhfqiiwn mvddkregvi
     1201 psfrvkfllr llrgrlevdl dkdkllfkhm cyemerlhng gdvtfhdvls mlsyrsvdir
     1261 kslqleella reqleytiee evakqtirmw lkkclkrira kqqqscsiih slresqqqel
     1321 srflnppsie ttqpsedmna inqdnsaqpe tssqqqllsp tlsdrggyrq dsadagkpqr
     1381 kfgqwrlpsa pkpishsvss vnlrfggrst mksvvckmnp msdaascgse vkkwwtrqlt
     1441 vesdesgedl ldi
//
LOCUS       XP_053941383            2008 aa            linear   VRT 09-MAR-2023
DEFINITION  cell adhesion molecule DSCAM isoform X1 [Cuculus canorus].
ACCESSION   XP_053941383
VERSION     XP_053941383.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085408.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2008
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2008
                     /product="cell adhesion molecule DSCAM isoform X1"
                     /calculated_mol_wt=222113
     Region          26..121
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          42..46
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          55..59
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          79..83
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          99..104
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          112..116
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          125..210
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          141..145
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          157..161
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          179..183
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          192..199
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          236..310
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          242..246
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          255..259
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          277..280
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          290..295
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          313..395
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          331..335
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          344..348
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          368..372
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          382..387
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          406..501
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          424..428
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          437..441
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          467..471
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          481..486
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          494..497
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          504..593
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          521..525
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          534..538
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          557..561
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          572..577
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          586..589
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          596..686
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          613..617
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          627..631
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          652..656
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          666..671
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          679..682
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          689..784
                     /region_name="Ig_DSCAM"
                     /note="Immunoglobulin (Ig)-like domain of Down Syndrome
                     Cell Adhesion molecule (DSCAM); cd05734"
                     /db_xref="CDD:409397"
     Region          689..693
                     /region_name="putative Ig strand A"
                     /note="putative Ig strand A [structural motif]"
                     /db_xref="CDD:409397"
     Region          698..702
                     /region_name="putative Ig strand A'"
                     /note="putative Ig strand A' [structural motif]"
                     /db_xref="CDD:409397"
     Region          704..714
                     /region_name="putative Ig strand B"
                     /note="putative Ig strand B [structural motif]"
                     /db_xref="CDD:409397"
     Region          720..726
                     /region_name="putative Ig strand C"
                     /note="putative Ig strand C [structural motif]"
                     /db_xref="CDD:409397"
     Region          733..736
                     /region_name="putative Ig strand C'"
                     /note="putative Ig strand C' [structural motif]"
                     /db_xref="CDD:409397"
     Region          744..747
                     /region_name="putative Ig strand D"
                     /note="putative Ig strand D [structural motif]"
                     /db_xref="CDD:409397"
     Region          749..755
                     /region_name="putative Ig strand E"
                     /note="putative Ig strand E [structural motif]"
                     /db_xref="CDD:409397"
     Region          762..770
                     /region_name="putative Ig strand F"
                     /note="putative Ig strand F [structural motif]"
                     /db_xref="CDD:409397"
     Region          775..784
                     /region_name="putative Ig strand G"
                     /note="putative Ig strand G [structural motif]"
                     /db_xref="CDD:409397"
     Region          785..884
                     /region_name="Ig_DSCAM"
                     /note="Immunoglobulin (Ig) domain of Down Syndrome Cell
                     Adhesion molecule (DSCAM); cd05735"
                     /db_xref="CDD:409398"
     Region          785..788
                     /region_name="putative Ig strand A"
                     /note="putative Ig strand A [structural motif]"
                     /db_xref="CDD:409398"
     Region          796..800
                     /region_name="putative Ig strand A'"
                     /note="putative Ig strand A' [structural motif]"
                     /db_xref="CDD:409398"
     Region          803..810
                     /region_name="putative Ig strand B"
                     /note="putative Ig strand B [structural motif]"
                     /db_xref="CDD:409398"
     Region          818..824
                     /region_name="putative Ig strand C"
                     /note="putative Ig strand C [structural motif]"
                     /db_xref="CDD:409398"
     Region          833..836
                     /region_name="putative Ig strand C'"
                     /note="putative Ig strand C' [structural motif]"
                     /db_xref="CDD:409398"
     Region          842..846
                     /region_name="putative Ig strand D"
                     /note="putative Ig strand D [structural motif]"
                     /db_xref="CDD:409398"
     Region          848..854
                     /region_name="putative Ig strand E"
                     /note="putative Ig strand E [structural motif]"
                     /db_xref="CDD:409398"
     Region          861..869
                     /region_name="putative Ig strand F"
                     /note="putative Ig strand F [structural motif]"
                     /db_xref="CDD:409398"
     Region          872..882
                     /region_name="putative Ig strand G"
                     /note="putative Ig strand G [structural motif]"
                     /db_xref="CDD:409398"
     Region          885..979
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(885,952,967)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          <935..1300
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(968..969,971..972)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1287..1363
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     Region          1380..1470
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1380,1443,1458)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(1459..1460,1462..1463)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1486..1555
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     CDS             1..2008
                     /gene="DSCAM"
                     /coded_by="XM_054085408.1:477..6503"
                     /db_xref="GeneID:104059265"
ORIGIN      
        1 mwmlavallh sishvfsedl haslyfvnas lqevvfastt gtlvpcpaag ippvtlrwyl
       61 atgeeiydvp girhvhpngt lqifpfppss fnnlihdnty yctaenpsgk irsqdvhika
      121 vlrepytvrv edqkamrgnv avfkciipss veayitvvsw ekdtvslvsg prflitstga
      181 lyildvqned glynyrcitr hrytgetrqs nsarlfvsdp ansapsildg fdhrkamagq
      241 rvelpckasg hpapkyrwlk dnvpwepdsr frqtvtglli entrpsdsgn yvcevwnnyg
      301 taemigrlyv kqplkatisp rkvkssvgsq vslscsvtgt edqelswyrn geiinpgnnv
      361 ritgvnrenl imdgmaksdg gayqcfvrkd kmsaqdyvqv vledgtpkii safsekvvsp
      421 gepvslmcnv kgtplptitw tldedpivkd gshrisqiit segnvvsyln isntqvrdgg
      481 vyrctannsa gvvpyqarin vrgpasirpm knitaiagrd tyihcrvigy pyysikwykn
      541 snllpfnhrq vafenngtlk lsdvqkevde geytcnvlvq pqlstsqsvh mtvkvppfiq
      601 pfefprfsig qrvfipcvvv sgdlpititw qkdgrpipas lgvtidnidf tsslrisnls
      661 lmhngnytci arndaaaveh qsqlivrvpp rfvvqpsdqd giygkaviln csaegypvpt
      721 ivwkyskgag vpqfqpialn griqlltngs llikhvleed sgyylckvsn dvgadvsksm
      781 yltvkipami tsypnttlat qgqkkemsct ahgekpiivr wekedriinp emsrylvstk
      841 evgdevistl qilptvreds gffschains ygedrgiiql tvqeppdppe ieirevrars
      901 ialrwtmgfd gnspitgydi ecknksdswd svqrtrdvsp qlnqatiidl hpsstynirm
      961 yaknrigkse asneltittd eaapdgppqd vqlepissqs irvtwkapkk hlqngiirgy
     1021 qigyreysag gnfqfniisi dttgdsevyt lnnlkkftqy gmvvqacnra gigpssqeii
     1081 tttledvpsc ppgnvqatat spetisisws tlaketlngi lqgfrviywa nlldgelgei
     1141 knvtttqpsl eldglekytn ysiqvlaftr agdgvrseqi ftrtkedvpg ppagvkaaaa
     1201 sastvfvswl pplklngiir kytvfcshpy ptvisefeas pdsfsyripn lsrnrqysvw
     1261 vvavtaagrg nsseiitvep lakaparilt fsgtvttpwm kdivlpckav gdpaptvkwm
     1321 kdsngtpslv midgrrsifs ngsfvirtvk aedsgyyscv asnnwgsdei ilnlqvqvpp
     1381 dqprltvskt tsssitlswi pgdnggssir gyilqysedn seqwgsfpis psersyrlet
     1441 lkcgtwykft ltaqngvgpg riseiieakt lgkepqfske qelfasintt rvrlnligwn
     1501 dggcpitsft leyrpfgttv wttaqrtsls ksyilydlqe atwyelqmrv cnsagcaekq
     1561 akfatlnydg stippliksv vqseeglatn eglkmlvtis cilvavlllf vmllivrrrr
     1621 reqrlkrlrd akslaemlms kntrtsdtln kqqqtlrmhi dipraqllie erdtmetidd
     1681 rstvlltdad fgetskqksl tvthtvhyqs vsqatgplvd vsdarpgtnp ttrrsaksgp
     1741 tarnryasqw tlnrphptis ahtlttdwrl ptprptgsvd kesdsysvsp sqdtdrarss
     1801 mvstesasst yeelarayeh akmeeqlrha kftitecfis dtsseqltag tndytdslts
     1861 stpsesgicr ftasppkpqd ggrvmnmavp kahrpgdlmh lppylrmdfl lnrgvqgtsr
     1921 dlglgqacle pqksrtlkrp tvlepipmet sstrevqswq pgavatlpqr egaelgqaak
     1981 msssqeslld srghlkgnnp yaksytlv
//
LOCUS       XP_053941393            1323 aa            linear   VRT 09-MAR-2023
DEFINITION  cell adhesion molecule DSCAM isoform X2 [Cuculus canorus].
ACCESSION   XP_053941393
VERSION     XP_053941393.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085418.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1323
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1323
                     /product="cell adhesion molecule DSCAM isoform X2"
                     /calculated_mol_wt=146193
     Region          26..121
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          42..46
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          55..59
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          79..83
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          99..104
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          112..116
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          125..210
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          141..145
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          157..161
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          179..183
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          192..199
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          236..310
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          242..246
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          255..259
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          277..280
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          290..295
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          313..395
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          331..335
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          344..348
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          368..372
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          382..387
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          406..501
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          424..428
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          437..441
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          467..471
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          481..486
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          494..497
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          504..593
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          521..525
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          534..538
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          557..561
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          572..577
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          586..589
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          596..686
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          613..617
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          627..631
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          652..656
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          666..671
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          679..682
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          689..784
                     /region_name="Ig_DSCAM"
                     /note="Immunoglobulin (Ig)-like domain of Down Syndrome
                     Cell Adhesion molecule (DSCAM); cd05734"
                     /db_xref="CDD:409397"
     Region          689..693
                     /region_name="putative Ig strand A"
                     /note="putative Ig strand A [structural motif]"
                     /db_xref="CDD:409397"
     Region          698..702
                     /region_name="putative Ig strand A'"
                     /note="putative Ig strand A' [structural motif]"
                     /db_xref="CDD:409397"
     Region          704..714
                     /region_name="putative Ig strand B"
                     /note="putative Ig strand B [structural motif]"
                     /db_xref="CDD:409397"
     Region          720..726
                     /region_name="putative Ig strand C"
                     /note="putative Ig strand C [structural motif]"
                     /db_xref="CDD:409397"
     Region          733..736
                     /region_name="putative Ig strand C'"
                     /note="putative Ig strand C' [structural motif]"
                     /db_xref="CDD:409397"
     Region          744..747
                     /region_name="putative Ig strand D"
                     /note="putative Ig strand D [structural motif]"
                     /db_xref="CDD:409397"
     Region          749..755
                     /region_name="putative Ig strand E"
                     /note="putative Ig strand E [structural motif]"
                     /db_xref="CDD:409397"
     Region          762..770
                     /region_name="putative Ig strand F"
                     /note="putative Ig strand F [structural motif]"
                     /db_xref="CDD:409397"
     Region          775..784
                     /region_name="putative Ig strand G"
                     /note="putative Ig strand G [structural motif]"
                     /db_xref="CDD:409397"
     Region          785..884
                     /region_name="Ig_DSCAM"
                     /note="Immunoglobulin (Ig) domain of Down Syndrome Cell
                     Adhesion molecule (DSCAM); cd05735"
                     /db_xref="CDD:409398"
     Region          785..788
                     /region_name="putative Ig strand A"
                     /note="putative Ig strand A [structural motif]"
                     /db_xref="CDD:409398"
     Region          796..800
                     /region_name="putative Ig strand A'"
                     /note="putative Ig strand A' [structural motif]"
                     /db_xref="CDD:409398"
     Region          803..810
                     /region_name="putative Ig strand B"
                     /note="putative Ig strand B [structural motif]"
                     /db_xref="CDD:409398"
     Region          818..824
                     /region_name="putative Ig strand C"
                     /note="putative Ig strand C [structural motif]"
                     /db_xref="CDD:409398"
     Region          833..836
                     /region_name="putative Ig strand C'"
                     /note="putative Ig strand C' [structural motif]"
                     /db_xref="CDD:409398"
     Region          842..846
                     /region_name="putative Ig strand D"
                     /note="putative Ig strand D [structural motif]"
                     /db_xref="CDD:409398"
     Region          848..854
                     /region_name="putative Ig strand E"
                     /note="putative Ig strand E [structural motif]"
                     /db_xref="CDD:409398"
     Region          861..869
                     /region_name="putative Ig strand F"
                     /note="putative Ig strand F [structural motif]"
                     /db_xref="CDD:409398"
     Region          872..882
                     /region_name="putative Ig strand G"
                     /note="putative Ig strand G [structural motif]"
                     /db_xref="CDD:409398"
     Region          885..979
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(885,952,967)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          <935..1300
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(968..969,971..972)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1323
                     /gene="DSCAM"
                     /coded_by="XM_054085418.1:484..4455"
                     /db_xref="GeneID:104059265"
ORIGIN      
        1 mwmlavallh sishvfsedl haslyfvnas lqevvfastt gtlvpcpaag ippvtlrwyl
       61 atgeeiydvp girhvhpngt lqifpfppss fnnlihdnty yctaenpsgk irsqdvhika
      121 vlrepytvrv edqkamrgnv avfkciipss veayitvvsw ekdtvslvsg prflitstga
      181 lyildvqned glynyrcitr hrytgetrqs nsarlfvsdp ansapsildg fdhrkamagq
      241 rvelpckasg hpapkyrwlk dnvpwepdsr frqtvtglli entrpsdsgn yvcevwnnyg
      301 taemigrlyv kqplkatisp rkvkssvgsq vslscsvtgt edqelswyrn geiinpgnnv
      361 ritgvnrenl imdgmaksdg gayqcfvrkd kmsaqdyvqv vledgtpkii safsekvvsp
      421 gepvslmcnv kgtplptitw tldedpivkd gshrisqiit segnvvsyln isntqvrdgg
      481 vyrctannsa gvvpyqarin vrgpasirpm knitaiagrd tyihcrvigy pyysikwykn
      541 snllpfnhrq vafenngtlk lsdvqkevde geytcnvlvq pqlstsqsvh mtvkvppfiq
      601 pfefprfsig qrvfipcvvv sgdlpititw qkdgrpipas lgvtidnidf tsslrisnls
      661 lmhngnytci arndaaaveh qsqlivrvpp rfvvqpsdqd giygkaviln csaegypvpt
      721 ivwkyskgag vpqfqpialn griqlltngs llikhvleed sgyylckvsn dvgadvsksm
      781 yltvkipami tsypnttlat qgqkkemsct ahgekpiivr wekedriinp emsrylvstk
      841 evgdevistl qilptvreds gffschains ygedrgiiql tvqeppdppe ieirevrars
      901 ialrwtmgfd gnspitgydi ecknksdswd svqrtrdvsp qlnqatiidl hpsstynirm
      961 yaknrigkse asneltittd eaapdgppqd vqlepissqs irvtwkapkk hlqngiirgy
     1021 qigyreysag gnfqfniisi dttgdsevyt lnnlkkftqy gmvvqacnra gigpssqeii
     1081 tttledvpsc ppgnvqatat spetisisws tlaketlngi lqgfrviywa nlldgelgei
     1141 knvtttqpsl eldglekytn ysiqvlaftr agdgvrseqi ftrtkedvpg ppagvkaaaa
     1201 sastvfvswl pplklngiir kytvfcshpy ptvisefeas pdsfsyripn lsrnrqysvw
     1261 vvavtaagrg nsseiitvep lakaparilt fsgtvttpwm kdivlpckav gdpaptvkwm
     1321 kdr
//
LOCUS       XP_053941406             353 aa            linear   VRT 09-MAR-2023
DEFINITION  cyclic AMP-dependent transcription factor ATF-4 [Cuculus canorus].
ACCESSION   XP_053941406
VERSION     XP_053941406.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085431.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..353
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..353
                     /product="cyclic AMP-dependent transcription factor ATF-4"
                     /calculated_mol_wt=38861
     Region          285..341
                     /region_name="bZIP_ATF4"
                     /note="Basic leucine zipper (bZIP) domain of Activating
                     Transcription Factor-4 (ATF-4) and similar proteins: a
                     DNA-binding and dimerization domain; cd14692"
                     /db_xref="CDD:269840"
     Region          285..340
                     /region_name="coiled coil"
                     /note="coiled coil [structural motif]"
                     /db_xref="CDD:269840"
     Site            order(285,287..289,291..296,298..300)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:269840"
     Site            order(303,306,309..310,313..314,316..317,320..321,
                     323..324,327,330..331,334..335,337..338)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:269840"
     CDS             1..353
                     /gene="ATF4"
                     /coded_by="XM_054085431.1:342..1403"
                     /db_xref="GeneID:104055514"
ORIGIN      
        1 msllnnemll gdllspfsqp csvaeeslgl lddylevaep lgshgfssdk akavssnwla
       61 vdslgntids sqedafsgme wmvekmdlke fdfdallgme hleatvspde lmatledtcd
      121 llfnptiqef hnkepplitd lithlpespp gadamaplas lwpfplcpgs ltstpdhsfs
      181 lelgsevdvl egerkqegpt fvvvikseke eenhsddsgi cmspysylgt pqhsptnsvg
      241 spndnqvpad ascssvrskp ydrpaekvas aeikekkidk klkkmeqnkt aatryrqkkr
      301 aeqealsgec releqknqal kekadslske iqylkdliee vrkakgkrar vpe
//
LOCUS       XP_053941413             353 aa            linear   VRT 09-MAR-2023
DEFINITION  cyclic AMP-dependent transcription factor ATF-4 [Cuculus canorus].
ACCESSION   XP_053941413
VERSION     XP_053941413.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085438.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..353
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..353
                     /product="cyclic AMP-dependent transcription factor ATF-4"
                     /calculated_mol_wt=38861
     Region          285..341
                     /region_name="bZIP_ATF4"
                     /note="Basic leucine zipper (bZIP) domain of Activating
                     Transcription Factor-4 (ATF-4) and similar proteins: a
                     DNA-binding and dimerization domain; cd14692"
                     /db_xref="CDD:269840"
     Region          285..340
                     /region_name="coiled coil"
                     /note="coiled coil [structural motif]"
                     /db_xref="CDD:269840"
     Site            order(285,287..289,291..296,298..300)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:269840"
     Site            order(303,306,309..310,313..314,316..317,320..321,
                     323..324,327,330..331,334..335,337..338)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:269840"
     CDS             1..353
                     /gene="ATF4"
                     /coded_by="XM_054085438.1:6..1067"
                     /db_xref="GeneID:104055514"
ORIGIN      
        1 msllnnemll gdllspfsqp csvaeeslgl lddylevaep lgshgfssdk akavssnwla
       61 vdslgntids sqedafsgme wmvekmdlke fdfdallgme hleatvspde lmatledtcd
      121 llfnptiqef hnkepplitd lithlpespp gadamaplas lwpfplcpgs ltstpdhsfs
      181 lelgsevdvl egerkqegpt fvvvikseke eenhsddsgi cmspysylgt pqhsptnsvg
      241 spndnqvpad ascssvrskp ydrpaekvas aeikekkidk klkkmeqnkt aatryrqkkr
      301 aeqealsgec releqknqal kekadslske iqylkdliee vrkakgkrar vpe
//
LOCUS       XP_053941423             140 aa            linear   VRT 09-MAR-2023
DEFINITION  active regulator of SIRT1 [Cuculus canorus].
ACCESSION   XP_053941423
VERSION     XP_053941423.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085448.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..140
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..140
                     /product="active regulator of SIRT1"
                     /calculated_mol_wt=15637
     Region          14..136
                     /region_name="AROS"
                     /note="Active regulator of SIRT1, or 40S ribosomal protein
                     S19-binding 1; pfam15684"
                     /db_xref="CDD:464802"
     CDS             1..140
                     /gene="RPS19BP1"
                     /coded_by="XM_054085448.1:65..487"
                     /db_xref="GeneID:104055513"
ORIGIN      
        1 msaslvrrgl ellaapgqgk asaglqqrqd gpraagtarr rkaaqeprrn katvkgrvvk
       61 saieeyrkka avnhlkanlq ymlkgrivan ktiteqvlaq nrgrkskdqp pkklekkkpq
      121 gtvfteedfr kfereyfgrp
//
LOCUS       XP_009565035             623 aa            linear   VRT 09-MAR-2023
DEFINITION  amiloride-sensitive sodium channel subunit alpha [Cuculus canorus].
ACCESSION   XP_009565035
VERSION     XP_009565035.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566740.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009565035.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..623
                     /product="amiloride-sensitive sodium channel subunit
                     alpha"
                     /calculated_mol_wt=71605
     Region          32..609
                     /region_name="ENaC"
                     /note="sodium channel transporter; TIGR00859"
                     /db_xref="CDD:273304"
     CDS             1..623
                     /gene="SCNN1A"
                     /coded_by="XM_009566740.2:149..2020"
                     /db_xref="GeneID:104064407"
ORIGIN      
        1 mpegektrqw kqeeeqqqke eeqegliefy gsyqelfqff csnttihgai rlvcskknkm
       61 ktafwsvlff ltfglmywqf gilyreyfsy pvnlnlnlss drltfpavtl ctlnpyrysa
      121 irkkldeldq ithqtlldly dynmslarsd wstqstgkrs srsllhqvqr hplrrqkrdn
      181 lvnlpensps vdkndwkigf vlcsennkdc fhqayssgvd avrewysfhy inilaqvpda
      241 kaldesdfen fiyacrfnea tcdkanythf hhplygncyt fndnssslwt sslpginngl
      301 slvvrteqnd fipllstvtg arvmvhdqne pafmddggfn vrpgietsis mrkemtvrlg
      361 gsysdctedg sdvpvqnlys sryteqvcir scfqlnmvdr cgcayyfypl pagaeycdyt
      421 khmawgycyy kllaefkadv lgcfhkcrkp ckmteyrlsa gyshwpsavs edwvfymlsq
      481 qnkynitskr ngvakvniff eqwnyktnge spaftvvtll sqlgnqwslw fgssvlsvme
      541 laelvldfia itcilalrwf rsrkqlstpg pppnshdnta fqdevpalga phrftveavv
      601 tmlpsynsle pcgpskdgev gre
//
LOCUS       XP_053941433             127 aa            linear   VRT 09-MAR-2023
DEFINITION  vesicle-associated membrane protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053941433
VERSION     XP_053941433.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085458.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..127
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..127
                     /product="vesicle-associated membrane protein 1 isoform
                     X1"
                     /calculated_mol_wt=13803
     Region          33..95
                     /region_name="R-SNARE_VAMP2"
                     /note="SNARE motif of VAMP2; cd15870"
                     /db_xref="CDD:277223"
     Site            order(34..36,38..39,41..46,48..50,52,55..56,58..60,62..67,
                     69..74,76..81,83..88,90..92,95)
                     /site_type="other"
                     /note="heterotetramer interface [polypeptide binding]"
                     /db_xref="CDD:277223"
     Site            59
                     /site_type="other"
                     /note="zero layer"
                     /db_xref="CDD:277223"
     CDS             1..127
                     /gene="VAMP1"
                     /coded_by="XM_054085458.1:104..487"
                     /db_xref="GeneID:104064378"
ORIGIN      
        1 msepaqqpap gapegaapgg gppgpppnlt snrrmqqtqa qveevvdimr vnldkvlerd
       61 qklselddra dalqagasqf essaaklkrk ywwknckmmi mmgvicaivv vvivskyqkp
      121 rikgeet
//
LOCUS       XP_053941444             126 aa            linear   VRT 09-MAR-2023
DEFINITION  vesicle-associated membrane protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053941444
VERSION     XP_053941444.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085469.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..126
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..126
                     /product="vesicle-associated membrane protein 1 isoform
                     X2"
                     /calculated_mol_wt=13407
     Region          33..95
                     /region_name="R-SNARE_VAMP2"
                     /note="SNARE motif of VAMP2; cd15870"
                     /db_xref="CDD:277223"
     Site            order(34..36,38..39,41..46,48..50,52,55..56,58..60,62..67,
                     69..74,76..81,83..88,90..92,95)
                     /site_type="other"
                     /note="heterotetramer interface [polypeptide binding]"
                     /db_xref="CDD:277223"
     Site            59
                     /site_type="other"
                     /note="zero layer"
                     /db_xref="CDD:277223"
     CDS             1..126
                     /gene="VAMP1"
                     /coded_by="XM_054085469.1:104..484"
                     /db_xref="GeneID:104064378"
ORIGIN      
        1 msepaqqpap gapegaapgg gppgpppnlt snrrmqqtqa qveevvdimr vnldkvlerd
       61 qklselddra dalqagasqf essaaklkrk ywwknckmmi mmgvicaivv vvivtlspaa
      121 sspfsc
//
LOCUS       XP_053941454             119 aa            linear   VRT 09-MAR-2023
DEFINITION  vesicle-associated membrane protein 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053941454
VERSION     XP_053941454.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085479.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..119
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..119
                     /product="vesicle-associated membrane protein 1 isoform
                     X3"
                     /calculated_mol_wt=12929
     Region          33..95
                     /region_name="R-SNARE_VAMP2"
                     /note="SNARE motif of VAMP2; cd15870"
                     /db_xref="CDD:277223"
     Site            order(34..36,38..39,41..46,48..50,52,55..56,58..60,62..67,
                     69..74,76..81,83..88,90..92,95)
                     /site_type="other"
                     /note="heterotetramer interface [polypeptide binding]"
                     /db_xref="CDD:277223"
     Site            59
                     /site_type="other"
                     /note="zero layer"
                     /db_xref="CDD:277223"
     CDS             1..119
                     /gene="VAMP1"
                     /coded_by="XM_054085479.1:104..463"
                     /db_xref="GeneID:104064378"
ORIGIN      
        1 msepaqqpap gapegaapgg gppgpppnlt snrrmqqtqa qveevvdimr vnldkvlerd
       61 qklselddra dalqagasqf essaaklkrk ywwknckmmi mmgvicaivv vviviyfft
//
LOCUS       XP_009567034             637 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein O1 [Cuculus canorus].
ACCESSION   XP_009567034
VERSION     XP_009567034.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568739.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567034.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..637
                     /product="forkhead box protein O1"
                     /calculated_mol_wt=68038
     Region          131..229
                     /region_name="FH_FOXO1"
                     /note="Forkhead (FH) domain found in Forkhead box protein
                     O1 (FOXO1); cd20060"
                     /db_xref="CDD:410834"
     Site            order(137..138,140,144..145,163..164,167,191..192,
                     194..195,198,205,212,214..215,217)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410834"
     Region          403..484
                     /region_name="FOXO_KIX_bdg"
                     /note="KIX-binding domain of forkhead box O, CR2;
                     pfam16675"
                     /db_xref="CDD:465228"
     Region          579..616
                     /region_name="FOXO-TAD"
                     /note="Transactivation domain of FOXO protein family;
                     pfam16676"
                     /db_xref="CDD:435506"
     CDS             1..637
                     /gene="FOXO1"
                     /coded_by="XM_009568739.2:135..2048"
                     /db_xref="GeneID:104066168"
ORIGIN      
        1 maeapqlvdi dpdfeplprp rsctwplprp efnppssats spapscggqp egaagaaasg
       61 glgadfisnl slleesedfa alppaapepp acrcgdfaap epgcrlhppg ppvpppvagl
      121 spgpaagqpr kssssrrnaw gnlsyadlit kaiesspekr ltlsqiyewm vksvpyfkdk
      181 gdsnssagwk nsirhnlslh skfirvqneg tgksswwmln peggksgksp rrraasmdnn
      241 skfaksrgra akkkaslqsg qegngdspgs qfskwpasps shsnddfdnw stfrprtssn
      301 astisgrlsp ilteqddlgd gdvhsmvyps satkmtstlp slsemsnsen menlldnlnl
      361 lspnasmtvs tqsssatlmq qtpgysfass ttsigspnpd yrkftyaqas mnslpqipmq
      421 tlqdskssyg smsqyncpag llkelltsds pphndilasv dtgvsqaggr algqsvlmvt
      481 nsvmpaygsq pphnkmmnpn arshqghnqp tpavngrals htvnamshts glnrlstvkt
      541 slqvpmshpm qmnamnpyap vnscngygrv givslhqekl psdlddmlie rldcdmesii
      601 rndlmdgetl dfnfdsvlpn qsfqhsvktt thswvsg
//
LOCUS       XP_053941477             270 aa            linear   VRT 09-MAR-2023
DEFINITION  folate receptor alpha [Cuculus canorus].
ACCESSION   XP_053941477
VERSION     XP_053941477.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085502.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..270
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..270
                     /product="folate receptor alpha"
                     /calculated_mol_wt=30553
     Region          27..201
                     /region_name="Folate_rec"
                     /note="Folate receptor family; pfam03024"
                     /db_xref="CDD:397250"
     CDS             1..270
                     /gene="LOC104056107"
                     /coded_by="XM_054085502.1:331..1143"
                     /db_xref="GeneID:104056107"
ORIGIN      
        1 malgqvllml laacvvvpak dpllnicmda khhktkpgpe gnlhdqcapw kdnacctant
       61 sseahkdqsy lykfnwnhcg rmplkckrhf iqdtclyecs pnlgpwidqv dsswrreril
      121 hvplckedce ewwedckdyv tckenwhkgw nwatgtnlcp wgamcrpfsq vfprpkdlce
      181 kiwsnsykyt tehrgsgrci qmwfdpaqgn pnvvvakyya wkkrsssarv esttpetdka
      241 icalpwlllv llslalgvvl egaagcgsqg
//
LOCUS       XP_009555617             270 aa            linear   VRT 09-MAR-2023
DEFINITION  folate receptor alpha [Cuculus canorus].
ACCESSION   XP_009555617
VERSION     XP_009555617.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557322.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555617.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..270
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..270
                     /product="folate receptor alpha"
                     /calculated_mol_wt=30553
     Region          27..201
                     /region_name="Folate_rec"
                     /note="Folate receptor family; pfam03024"
                     /db_xref="CDD:397250"
     CDS             1..270
                     /gene="LOC104056107"
                     /coded_by="XM_009557322.2:315..1127"
                     /db_xref="GeneID:104056107"
ORIGIN      
        1 malgqvllml laacvvvpak dpllnicmda khhktkpgpe gnlhdqcapw kdnacctant
       61 sseahkdqsy lykfnwnhcg rmplkckrhf iqdtclyecs pnlgpwidqv dsswrreril
      121 hvplckedce ewwedckdyv tckenwhkgw nwatgtnlcp wgamcrpfsq vfprpkdlce
      181 kiwsnsykyt tehrgsgrci qmwfdpaqgn pnvvvakyya wkkrsssarv esttpetdka
      241 icalpwlllv llslalgvvl egaagcgsqg
//
LOCUS       XP_053941500             713 aa            linear   VRT 09-MAR-2023
DEFINITION  ORC ubiquitin ligase 1 [Cuculus canorus].
ACCESSION   XP_053941500
VERSION     XP_053941500.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085525.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..713
                     /product="ORC ubiquitin ligase 1"
                     /calculated_mol_wt=79162
     Region          15..59
                     /region_name="RING-HC_RNF219"
                     /note="RING finger, HC subclass, found in RING finger
                     protein 219 (RNF219) and similar proteins; cd16562"
                     /db_xref="CDD:438224"
     Region          91..>260
                     /region_name="EnvC"
                     /note="Septal ring factor EnvC, activator of murein
                     hydrolases AmiA and AmiB [Cell cycle control, cell
                     division, chromosome partitioning]; COG4942"
                     /db_xref="CDD:443969"
     CDS             1..713
                     /gene="OBI1"
                     /coded_by="XM_054085525.1:63..2204"
                     /db_xref="GeneID:104068403"
ORIGIN      
        1 maqsgpsvtl sltlpitchi clgkvrhpvi cvnnhvfcsi cievwlknnn qcpacripit
       61 penpckeiig gtsesdpifn ptvrkhlrkt rlellhkeye deieslqkev edlrgknlsl
      121 qaqlkslldp tasslscqne etsqstieas tsgpetpeew skklkaandm yekvmdnvek
      181 lkeankklsm ennsllrenl rlkaevdsrs pqkfgrftva alqskveqse remnrlkkal
      241 ersdkyieem ecqllqlkka gegtqtvsav servlstdae ggessegttp lktqveeknt
      301 lttsqssdsl eqltsggtcl ssssqncsng sntqcapkke lfagcqgvll denatnmdac
      361 leeqwnkiee ctaykdeely dlpppctpfl slsrlqlntp dgkenarkps tflrklkfee
      421 fcntsdncsk dspehstsss nsekklncfa tgksgfwgtc ptnfaenldf deseqnsvag
      481 qsddtsvkss dkasscvpkr lhalcssemn rtrtsseasm daayldkise ldsmmsesdn
      541 skspcynfks sdldnsskst ecskllsete kkleemneeq smkcpetsdl avdrtawkpa
      601 mfsihspsev dmndhfplft gqnlvasdsk psnclfqrdf sqnalfsnsq rlfeeqkfgs
      661 cflktssdlh nqlhppwmss fiaerknknv sqstkrkiqs slssaspskt tkn
//
LOCUS       XP_009564829             257 aa            linear   VRT 09-MAR-2023
DEFINITION  pancreas/duodenum homeobox protein 1 [Cuculus canorus].
ACCESSION   XP_009564829
VERSION     XP_009564829.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566534.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564829.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..257
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..257
                     /product="pancreas/duodenum homeobox protein 1"
                     /calculated_mol_wt=29161
     Region          144..200
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     CDS             1..257
                     /gene="PDX1"
                     /coded_by="XM_009566534.2:1..774"
                     /db_xref="GeneID:104064232"
ORIGIN      
        1 mnteeqyyas aqlykepcaf qraqaqdyss sppaclymgr qqqspypsgl galeqgsppd
       61 iapyevppit edagvchlhh hhhhhphlpl phqdelpfad gadtgaieep rvqvpfawmk
      121 stkshawkgq waggsyvveq eenkrtrtay traqllelek eflfnkyisr prrvelavml
      181 nlterhikiw fqnrrmkwkk eedkkrgasn sndpeqdcav ssgelqgked lqpcppgnlp
      241 sgasrdllap rrqqdsr
//
LOCUS       XP_053941527             340 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Tob2 [Cuculus canorus].
ACCESSION   XP_053941527
VERSION     XP_053941527.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085552.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..340
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..340
                     /product="protein Tob2"
                     /calculated_mol_wt=36196
     Region          1..113
                     /region_name="BTG"
                     /note="BTG family; pfam07742"
                     /db_xref="CDD:462251"
     CDS             1..340
                     /gene="TOB2"
                     /coded_by="XM_054085552.1:338..1360"
                     /db_xref="GeneID:104055495"
ORIGIN      
        1 mhleikvaln fiisylynkl prrradlfge elerllkkky eghwypekpl kgsgyrcvhi
       61 getvdpvvel aakrsglave dvranvpeel svwidpfevs yqigekgsvk vlylddsegc
      121 sameldkeik ssfnpdaqvf vpigsqdnsl snspspsfgq spsptfiprs aqpitfttat
      181 faatkfgstk mkkgggaggg ggaagagqqp rmvrspttnl lkhkglslsm hslnfvgsag
      241 sqapqsqlsp nakefvysgg spgasslffd gvasesqass ippasqfntg tggtfdmaqv
      301 fggstnslfl ekspfvegls ynlnamqyps qsfqpvvlan
//
LOCUS       XP_053941534             340 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Tob2 [Cuculus canorus].
ACCESSION   XP_053941534
VERSION     XP_053941534.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085559.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..340
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..340
                     /product="protein Tob2"
                     /calculated_mol_wt=36196
     Region          1..113
                     /region_name="BTG"
                     /note="BTG family; pfam07742"
                     /db_xref="CDD:462251"
     CDS             1..340
                     /gene="TOB2"
                     /coded_by="XM_054085559.1:105..1127"
                     /db_xref="GeneID:104055495"
ORIGIN      
        1 mhleikvaln fiisylynkl prrradlfge elerllkkky eghwypekpl kgsgyrcvhi
       61 getvdpvvel aakrsglave dvranvpeel svwidpfevs yqigekgsvk vlylddsegc
      121 sameldkeik ssfnpdaqvf vpigsqdnsl snspspsfgq spsptfiprs aqpitfttat
      181 faatkfgstk mkkgggaggg ggaagagqqp rmvrspttnl lkhkglslsm hslnfvgsag
      241 sqapqsqlsp nakefvysgg spgasslffd gvasesqass ippasqfntg tggtfdmaqv
      301 fggstnslfl ekspfvegls ynlnamqyps qsfqpvvlan
//
LOCUS       XP_053941543             340 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Tob2 [Cuculus canorus].
ACCESSION   XP_053941543
VERSION     XP_053941543.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085568.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..340
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..340
                     /product="protein Tob2"
                     /calculated_mol_wt=36196
     Region          1..113
                     /region_name="BTG"
                     /note="BTG family; pfam07742"
                     /db_xref="CDD:462251"
     CDS             1..340
                     /gene="TOB2"
                     /coded_by="XM_054085568.1:212..1234"
                     /db_xref="GeneID:104055495"
ORIGIN      
        1 mhleikvaln fiisylynkl prrradlfge elerllkkky eghwypekpl kgsgyrcvhi
       61 getvdpvvel aakrsglave dvranvpeel svwidpfevs yqigekgsvk vlylddsegc
      121 sameldkeik ssfnpdaqvf vpigsqdnsl snspspsfgq spsptfiprs aqpitfttat
      181 faatkfgstk mkkgggaggg ggaagagqqp rmvrspttnl lkhkglslsm hslnfvgsag
      241 sqapqsqlsp nakefvysgg spgasslffd gvasesqass ippasqfntg tggtfdmaqv
      301 fggstnslfl ekspfvegls ynlnamqyps qsfqpvvlan
//
LOCUS       XP_053941561            1259 aa            linear   VRT 09-MAR-2023
DEFINITION  activating transcription factor 7-interacting protein 1 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053941561
VERSION     XP_053941561.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085586.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1259
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1259
                     /product="activating transcription factor 7-interacting
                     protein 1 isoform X1"
                     /calculated_mol_wt=138513
     Region          391..607
                     /region_name="ATF7IP_BD"
                     /note="ATF-interacting protein binding domain; pfam16788"
                     /db_xref="CDD:465271"
     Region          <502..>779
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          947..1084
                     /region_name="DUF3504"
                     /note="Domain of unknown function (DUF3504); pfam12012"
                     /db_xref="CDD:463430"
     Region          <1066..1150
                     /region_name="XerD"
                     /note="Site-specific recombinase XerD [Replication,
                     recombination and repair]; COG4974"
                     /db_xref="CDD:443999"
     CDS             1..1259
                     /gene="ATF7IP"
                     /coded_by="XM_054085586.1:102..3881"
                     /db_xref="GeneID:104055471"
ORIGIN      
        1 mdsteepqkk vfkarktmrv sdrqqleavy kvkeellktt evkllngkhd ngdsdlnspl
       61 nstdctedkr evnglvdscd kseegkpasd evsearrpes rtgnivsdve pkrpilppdn
      121 vtsgqdkdid talaseaesg lpgsnkdtfr eenkakdhld qreseipses ksksicdisn
      181 sseekgdtnn sainssslde ekktgevtie davgeaaiss smetdeepkd kqdstvglse
      241 tvfqktinep sesilgnnds metdeiipil eklapaedel scfsrtpllp advtvpdlve
      301 kpdnclaspc kqesneslpk eaflvlsdee dpcdekeera evilpnkssl pevektreks
      361 eekeealkee khteisevsr rkrsksedid svhskrrrym gedyeaelqv kitarkdtdq
      421 klqkiiqrll eeklsalqca vfdktladlk triekvecnk rhktvltelq ariarltkrf
      481 gaaredlkkr qedtpaepqs pvkaaadtan tnnatyrnvg tvrqmlelkr nvgdntpatf
      541 qaplnstpas slaapptavs ghpkpqtpvt sttsltttvl pvpntatvvg tnqvpsgstq
      601 svsvslqslp vilhvpvavs sqhqllqsht gtlvtnqqsg svefisvqgp ssvgsltkta
      661 vslastkpnn spsvpspgtq rnppasagsv gtalavqavs tahpvaqatr tslptvgtsg
      721 lysaassrtp lqmkiplsaf sttpsieppt vtaprvenqt srppvdasan krtaegttqq
      781 lkqeetssen keaveaeqtn fnfpedvlfg leeeeedaks iknthkqtgw aanllkqwla
      841 kngkdpsfel vpvselndil refyytirnh dgntysvasy ksiraglnrh lkmppynrqi
      901 clmkdkdfss anmvfvsvlk mlrmqgkdet hhhppiaaed lrkikhsgvl glhsplalvn
      961 kvwfdlqlhf akrgreilrd lapdafvvek dkngrryamf rypgkgknge dphkmgkmyd
     1021 mpgdpncpvf slelylsklp peppafylhp lkltseqmqe qpvwykrepm gvnylgtmmp
     1081 risvaarlsq rytnhslrtt tiqllceagl gpreimavtg hrsesairhy wgaaevryra
     1141 wsdvmennap sylfskipne vikeslcgas tssinqileq skilfpkksv vppgtnsvtl
     1201 vpeghralns espvllnhss skvfhpkkla ngnltvgslq gcgnkpvfik rvikqepmt
//
LOCUS       XP_053941565            1259 aa            linear   VRT 09-MAR-2023
DEFINITION  activating transcription factor 7-interacting protein 1 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053941565
VERSION     XP_053941565.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085590.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1259
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1259
                     /product="activating transcription factor 7-interacting
                     protein 1 isoform X2"
                     /calculated_mol_wt=138514
     Region          392..608
                     /region_name="ATF7IP_BD"
                     /note="ATF-interacting protein binding domain; pfam16788"
                     /db_xref="CDD:465271"
     Region          <503..>790
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          947..1084
                     /region_name="DUF3504"
                     /note="Domain of unknown function (DUF3504); pfam12012"
                     /db_xref="CDD:463430"
     Region          <1066..1150
                     /region_name="XerD"
                     /note="Site-specific recombinase XerD [Replication,
                     recombination and repair]; COG4974"
                     /db_xref="CDD:443999"
     CDS             1..1259
                     /gene="ATF7IP"
                     /coded_by="XM_054085590.1:102..3881"
                     /db_xref="GeneID:104055471"
ORIGIN      
        1 mdsteepqkk vfkarktmrv sdrqqleavy kvkeellktt evkllngkhd ngdsdlnspl
       61 nstdctedkr evnglvdscd kseegkpasd evsearrpes rtgnivsdve pkrpilppdn
      121 vtsgqdkdid talaseaesg lpgsnkdtfr eenkakdhld qreseipses ksksicdisn
      181 sseekgdtnn sainssslde ekktgevtie davgeaaiss smetdeepkd kqdstvglse
      241 tvfqktinep sesilgnnds metdeiipil eklapaedel scfsrtpllp advtvpdlve
      301 kpdnclaspc kqesneslpk eaflvlsdee dpcdekeera evilpnkssl peevektrek
      361 seekeealke ekhteisevs rrkrsksedi dsvhskrrry mgedyeaelq vkitarkdtd
      421 qklqkiiqrl leeklsalqc avfdktladl ktriekvecn krhktvltel qariarltkr
      481 fgaaredlkk rqedtpaepq spvkaaadta ntnnatyrnv gtvrqmlelk rnvgdntpat
      541 fqaplnstpa sslaapptav sghpkpqtpv tsttsltttv lpvpntatvv gtnqvpsgst
      601 qsvsvslqsl pvilhvpvav ssqhqllqsh tgtlvtnqqs gsvefisvqg pssvgsltkt
      661 avslastkpn nspsvpspgt qrnppasags vgtalavqav stahpvaqat rtslptvgts
      721 glysaassrt plqmkiplsa fsttpsiepp tvtaprvenq tsrppvdasa nkrtaegttq
      781 lkqeetssen keaveaeqtn fnfpedvlfg leeeeedaks iknthkqtgw aanllkqwla
      841 kngkdpsfel vpvselndil refyytirnh dgntysvasy ksiraglnrh lkmppynrqi
      901 clmkdkdfss anmvfvsvlk mlrmqgkdet hhhppiaaed lrkikhsgvl glhsplalvn
      961 kvwfdlqlhf akrgreilrd lapdafvvek dkngrryamf rypgkgknge dphkmgkmyd
     1021 mpgdpncpvf slelylsklp peppafylhp lkltseqmqe qpvwykrepm gvnylgtmmp
     1081 risvaarlsq rytnhslrtt tiqllceagl gpreimavtg hrsesairhy wgaaevryra
     1141 wsdvmennap sylfskipne vikeslcgas tssinqileq skilfpkksv vppgtnsvtl
     1201 vpeghralns espvllnhss skvfhpkkla ngnltvgslq gcgnkpvfik rvikqepmt
//
LOCUS       XP_053941574            1260 aa            linear   VRT 09-MAR-2023
DEFINITION  activating transcription factor 7-interacting protein 1 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053941574
VERSION     XP_053941574.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085599.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1260
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1260
                     /product="activating transcription factor 7-interacting
                     protein 1 isoform X3"
                     /calculated_mol_wt=138642
     Region          392..608
                     /region_name="ATF7IP_BD"
                     /note="ATF-interacting protein binding domain; pfam16788"
                     /db_xref="CDD:465271"
     Region          <503..>780
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          948..1085
                     /region_name="DUF3504"
                     /note="Domain of unknown function (DUF3504); pfam12012"
                     /db_xref="CDD:463430"
     Region          <1067..1151
                     /region_name="XerD"
                     /note="Site-specific recombinase XerD [Replication,
                     recombination and repair]; COG4974"
                     /db_xref="CDD:443999"
     CDS             1..1260
                     /gene="ATF7IP"
                     /coded_by="XM_054085599.1:576..4358"
                     /db_xref="GeneID:104055471"
ORIGIN      
        1 mdsteepqkk vfkarktmrv sdrqqleavy kvkeellktt evkllngkhd ngdsdlnspl
       61 nstdctedkr evnglvdscd kseegkpasd evsearrpes rtgnivsdve pkrpilppdn
      121 vtsgqdkdid talaseaesg lpgsnkdtfr eenkakdhld qreseipses ksksicdisn
      181 sseekgdtnn sainssslde ekktgevtie davgeaaiss smetdeepkd kqdstvglse
      241 tvfqktinep sesilgnnds metdeiipil eklapaedel scfsrtpllp advtvpdlve
      301 kpdnclaspc kqesneslpk eaflvlsdee dpcdekeera evilpnkssl peevektrek
      361 seekeealke ekhteisevs rrkrsksedi dsvhskrrry mgedyeaelq vkitarkdtd
      421 qklqkiiqrl leeklsalqc avfdktladl ktriekvecn krhktvltel qariarltkr
      481 fgaaredlkk rqedtpaepq spvkaaadta ntnnatyrnv gtvrqmlelk rnvgdntpat
      541 fqaplnstpa sslaapptav sghpkpqtpv tsttsltttv lpvpntatvv gtnqvpsgst
      601 qsvsvslqsl pvilhvpvav ssqhqllqsh tgtlvtnqqs gsvefisvqg pssvgsltkt
      661 avslastkpn nspsvpspgt qrnppasags vgtalavqav stahpvaqat rtslptvgts
      721 glysaassrt plqmkiplsa fsttpsiepp tvtaprvenq tsrppvdasa nkrtaegttq
      781 qlkqeetsse nkeaveaeqt nfnfpedvlf gleeeeedak siknthkqtg waanllkqwl
      841 akngkdpsfe lvpvselndi lrefyytirn hdgntysvas yksiraglnr hlkmppynrq
      901 iclmkdkdfs sanmvfvsvl kmlrmqgkde thhhppiaae dlrkikhsgv lglhsplalv
      961 nkvwfdlqlh fakrgreilr dlapdafvve kdkngrryam frypgkgkng edphkmgkmy
     1021 dmpgdpncpv fslelylskl ppeppafylh plkltseqmq eqpvwykrep mgvnylgtmm
     1081 prisvaarls qrytnhslrt ttiqllceag lgpreimavt ghrsesairh ywgaaevryr
     1141 awsdvmenna psylfskipn evikeslcga stssinqile qskilfpkks vvppgtnsvt
     1201 lvpeghraln sespvllnhs sskvfhpkkl angnltvgsl qgcgnkpvfi krvikqepmt
//
LOCUS       XP_053941585            1260 aa            linear   VRT 09-MAR-2023
DEFINITION  activating transcription factor 7-interacting protein 1 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053941585
VERSION     XP_053941585.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085610.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1260
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1260
                     /product="activating transcription factor 7-interacting
                     protein 1 isoform X3"
                     /calculated_mol_wt=138642
     Region          392..608
                     /region_name="ATF7IP_BD"
                     /note="ATF-interacting protein binding domain; pfam16788"
                     /db_xref="CDD:465271"
     Region          <503..>780
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          948..1085
                     /region_name="DUF3504"
                     /note="Domain of unknown function (DUF3504); pfam12012"
                     /db_xref="CDD:463430"
     Region          <1067..1151
                     /region_name="XerD"
                     /note="Site-specific recombinase XerD [Replication,
                     recombination and repair]; COG4974"
                     /db_xref="CDD:443999"
     CDS             1..1260
                     /gene="ATF7IP"
                     /coded_by="XM_054085610.1:360..4142"
                     /db_xref="GeneID:104055471"
ORIGIN      
        1 mdsteepqkk vfkarktmrv sdrqqleavy kvkeellktt evkllngkhd ngdsdlnspl
       61 nstdctedkr evnglvdscd kseegkpasd evsearrpes rtgnivsdve pkrpilppdn
      121 vtsgqdkdid talaseaesg lpgsnkdtfr eenkakdhld qreseipses ksksicdisn
      181 sseekgdtnn sainssslde ekktgevtie davgeaaiss smetdeepkd kqdstvglse
      241 tvfqktinep sesilgnnds metdeiipil eklapaedel scfsrtpllp advtvpdlve
      301 kpdnclaspc kqesneslpk eaflvlsdee dpcdekeera evilpnkssl peevektrek
      361 seekeealke ekhteisevs rrkrsksedi dsvhskrrry mgedyeaelq vkitarkdtd
      421 qklqkiiqrl leeklsalqc avfdktladl ktriekvecn krhktvltel qariarltkr
      481 fgaaredlkk rqedtpaepq spvkaaadta ntnnatyrnv gtvrqmlelk rnvgdntpat
      541 fqaplnstpa sslaapptav sghpkpqtpv tsttsltttv lpvpntatvv gtnqvpsgst
      601 qsvsvslqsl pvilhvpvav ssqhqllqsh tgtlvtnqqs gsvefisvqg pssvgsltkt
      661 avslastkpn nspsvpspgt qrnppasags vgtalavqav stahpvaqat rtslptvgts
      721 glysaassrt plqmkiplsa fsttpsiepp tvtaprvenq tsrppvdasa nkrtaegttq
      781 qlkqeetsse nkeaveaeqt nfnfpedvlf gleeeeedak siknthkqtg waanllkqwl
      841 akngkdpsfe lvpvselndi lrefyytirn hdgntysvas yksiraglnr hlkmppynrq
      901 iclmkdkdfs sanmvfvsvl kmlrmqgkde thhhppiaae dlrkikhsgv lglhsplalv
      961 nkvwfdlqlh fakrgreilr dlapdafvve kdkngrryam frypgkgkng edphkmgkmy
     1021 dmpgdpncpv fslelylskl ppeppafylh plkltseqmq eqpvwykrep mgvnylgtmm
     1081 prisvaarls qrytnhslrt ttiqllceag lgpreimavt ghrsesairh ywgaaevryr
     1141 awsdvmenna psylfskipn evikeslcga stssinqile qskilfpkks vvppgtnsvt
     1201 lvpeghraln sespvllnhs sskvfhpkkl angnltvgsl qgcgnkpvfi krvikqepmt
//
LOCUS       XP_053941596            1260 aa            linear   VRT 09-MAR-2023
DEFINITION  activating transcription factor 7-interacting protein 1 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053941596
VERSION     XP_053941596.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085621.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1260
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1260
                     /product="activating transcription factor 7-interacting
                     protein 1 isoform X3"
                     /calculated_mol_wt=138642
     Region          392..608
                     /region_name="ATF7IP_BD"
                     /note="ATF-interacting protein binding domain; pfam16788"
                     /db_xref="CDD:465271"
     Region          <503..>780
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          948..1085
                     /region_name="DUF3504"
                     /note="Domain of unknown function (DUF3504); pfam12012"
                     /db_xref="CDD:463430"
     Region          <1067..1151
                     /region_name="XerD"
                     /note="Site-specific recombinase XerD [Replication,
                     recombination and repair]; COG4974"
                     /db_xref="CDD:443999"
     CDS             1..1260
                     /gene="ATF7IP"
                     /coded_by="XM_054085621.1:396..4178"
                     /db_xref="GeneID:104055471"
ORIGIN      
        1 mdsteepqkk vfkarktmrv sdrqqleavy kvkeellktt evkllngkhd ngdsdlnspl
       61 nstdctedkr evnglvdscd kseegkpasd evsearrpes rtgnivsdve pkrpilppdn
      121 vtsgqdkdid talaseaesg lpgsnkdtfr eenkakdhld qreseipses ksksicdisn
      181 sseekgdtnn sainssslde ekktgevtie davgeaaiss smetdeepkd kqdstvglse
      241 tvfqktinep sesilgnnds metdeiipil eklapaedel scfsrtpllp advtvpdlve
      301 kpdnclaspc kqesneslpk eaflvlsdee dpcdekeera evilpnkssl peevektrek
      361 seekeealke ekhteisevs rrkrsksedi dsvhskrrry mgedyeaelq vkitarkdtd
      421 qklqkiiqrl leeklsalqc avfdktladl ktriekvecn krhktvltel qariarltkr
      481 fgaaredlkk rqedtpaepq spvkaaadta ntnnatyrnv gtvrqmlelk rnvgdntpat
      541 fqaplnstpa sslaapptav sghpkpqtpv tsttsltttv lpvpntatvv gtnqvpsgst
      601 qsvsvslqsl pvilhvpvav ssqhqllqsh tgtlvtnqqs gsvefisvqg pssvgsltkt
      661 avslastkpn nspsvpspgt qrnppasags vgtalavqav stahpvaqat rtslptvgts
      721 glysaassrt plqmkiplsa fsttpsiepp tvtaprvenq tsrppvdasa nkrtaegttq
      781 qlkqeetsse nkeaveaeqt nfnfpedvlf gleeeeedak siknthkqtg waanllkqwl
      841 akngkdpsfe lvpvselndi lrefyytirn hdgntysvas yksiraglnr hlkmppynrq
      901 iclmkdkdfs sanmvfvsvl kmlrmqgkde thhhppiaae dlrkikhsgv lglhsplalv
      961 nkvwfdlqlh fakrgreilr dlapdafvve kdkngrryam frypgkgkng edphkmgkmy
     1021 dmpgdpncpv fslelylskl ppeppafylh plkltseqmq eqpvwykrep mgvnylgtmm
     1081 prisvaarls qrytnhslrt ttiqllceag lgpreimavt ghrsesairh ywgaaevryr
     1141 awsdvmenna psylfskipn evikeslcga stssinqile qskilfpkks vvppgtnsvt
     1201 lvpeghraln sespvllnhs sskvfhpkkl angnltvgsl qgcgnkpvfi krvikqepmt
//
LOCUS       XP_053941607            1260 aa            linear   VRT 09-MAR-2023
DEFINITION  activating transcription factor 7-interacting protein 1 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053941607
VERSION     XP_053941607.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085632.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1260
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1260
                     /product="activating transcription factor 7-interacting
                     protein 1 isoform X3"
                     /calculated_mol_wt=138642
     Region          392..608
                     /region_name="ATF7IP_BD"
                     /note="ATF-interacting protein binding domain; pfam16788"
                     /db_xref="CDD:465271"
     Region          <503..>780
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          948..1085
                     /region_name="DUF3504"
                     /note="Domain of unknown function (DUF3504); pfam12012"
                     /db_xref="CDD:463430"
     Region          <1067..1151
                     /region_name="XerD"
                     /note="Site-specific recombinase XerD [Replication,
                     recombination and repair]; COG4974"
                     /db_xref="CDD:443999"
     CDS             1..1260
                     /gene="ATF7IP"
                     /coded_by="XM_054085632.1:361..4143"
                     /db_xref="GeneID:104055471"
ORIGIN      
        1 mdsteepqkk vfkarktmrv sdrqqleavy kvkeellktt evkllngkhd ngdsdlnspl
       61 nstdctedkr evnglvdscd kseegkpasd evsearrpes rtgnivsdve pkrpilppdn
      121 vtsgqdkdid talaseaesg lpgsnkdtfr eenkakdhld qreseipses ksksicdisn
      181 sseekgdtnn sainssslde ekktgevtie davgeaaiss smetdeepkd kqdstvglse
      241 tvfqktinep sesilgnnds metdeiipil eklapaedel scfsrtpllp advtvpdlve
      301 kpdnclaspc kqesneslpk eaflvlsdee dpcdekeera evilpnkssl peevektrek
      361 seekeealke ekhteisevs rrkrsksedi dsvhskrrry mgedyeaelq vkitarkdtd
      421 qklqkiiqrl leeklsalqc avfdktladl ktriekvecn krhktvltel qariarltkr
      481 fgaaredlkk rqedtpaepq spvkaaadta ntnnatyrnv gtvrqmlelk rnvgdntpat
      541 fqaplnstpa sslaapptav sghpkpqtpv tsttsltttv lpvpntatvv gtnqvpsgst
      601 qsvsvslqsl pvilhvpvav ssqhqllqsh tgtlvtnqqs gsvefisvqg pssvgsltkt
      661 avslastkpn nspsvpspgt qrnppasags vgtalavqav stahpvaqat rtslptvgts
      721 glysaassrt plqmkiplsa fsttpsiepp tvtaprvenq tsrppvdasa nkrtaegttq
      781 qlkqeetsse nkeaveaeqt nfnfpedvlf gleeeeedak siknthkqtg waanllkqwl
      841 akngkdpsfe lvpvselndi lrefyytirn hdgntysvas yksiraglnr hlkmppynrq
      901 iclmkdkdfs sanmvfvsvl kmlrmqgkde thhhppiaae dlrkikhsgv lglhsplalv
      961 nkvwfdlqlh fakrgreilr dlapdafvve kdkngrryam frypgkgkng edphkmgkmy
     1021 dmpgdpncpv fslelylskl ppeppafylh plkltseqmq eqpvwykrep mgvnylgtmm
     1081 prisvaarls qrytnhslrt ttiqllceag lgpreimavt ghrsesairh ywgaaevryr
     1141 awsdvmenna psylfskipn evikeslcga stssinqile qskilfpkks vvppgtnsvt
     1201 lvpeghraln sespvllnhs sskvfhpkkl angnltvgsl qgcgnkpvfi krvikqepmt
//
LOCUS       XP_053941615            1260 aa            linear   VRT 09-MAR-2023
DEFINITION  activating transcription factor 7-interacting protein 1 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053941615
VERSION     XP_053941615.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085640.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1260
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1260
                     /product="activating transcription factor 7-interacting
                     protein 1 isoform X3"
                     /calculated_mol_wt=138642
     Region          392..608
                     /region_name="ATF7IP_BD"
                     /note="ATF-interacting protein binding domain; pfam16788"
                     /db_xref="CDD:465271"
     Region          <503..>780
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          948..1085
                     /region_name="DUF3504"
                     /note="Domain of unknown function (DUF3504); pfam12012"
                     /db_xref="CDD:463430"
     Region          <1067..1151
                     /region_name="XerD"
                     /note="Site-specific recombinase XerD [Replication,
                     recombination and repair]; COG4974"
                     /db_xref="CDD:443999"
     CDS             1..1260
                     /gene="ATF7IP"
                     /coded_by="XM_054085640.1:481..4263"
                     /db_xref="GeneID:104055471"
ORIGIN      
        1 mdsteepqkk vfkarktmrv sdrqqleavy kvkeellktt evkllngkhd ngdsdlnspl
       61 nstdctedkr evnglvdscd kseegkpasd evsearrpes rtgnivsdve pkrpilppdn
      121 vtsgqdkdid talaseaesg lpgsnkdtfr eenkakdhld qreseipses ksksicdisn
      181 sseekgdtnn sainssslde ekktgevtie davgeaaiss smetdeepkd kqdstvglse
      241 tvfqktinep sesilgnnds metdeiipil eklapaedel scfsrtpllp advtvpdlve
      301 kpdnclaspc kqesneslpk eaflvlsdee dpcdekeera evilpnkssl peevektrek
      361 seekeealke ekhteisevs rrkrsksedi dsvhskrrry mgedyeaelq vkitarkdtd
      421 qklqkiiqrl leeklsalqc avfdktladl ktriekvecn krhktvltel qariarltkr
      481 fgaaredlkk rqedtpaepq spvkaaadta ntnnatyrnv gtvrqmlelk rnvgdntpat
      541 fqaplnstpa sslaapptav sghpkpqtpv tsttsltttv lpvpntatvv gtnqvpsgst
      601 qsvsvslqsl pvilhvpvav ssqhqllqsh tgtlvtnqqs gsvefisvqg pssvgsltkt
      661 avslastkpn nspsvpspgt qrnppasags vgtalavqav stahpvaqat rtslptvgts
      721 glysaassrt plqmkiplsa fsttpsiepp tvtaprvenq tsrppvdasa nkrtaegttq
      781 qlkqeetsse nkeaveaeqt nfnfpedvlf gleeeeedak siknthkqtg waanllkqwl
      841 akngkdpsfe lvpvselndi lrefyytirn hdgntysvas yksiraglnr hlkmppynrq
      901 iclmkdkdfs sanmvfvsvl kmlrmqgkde thhhppiaae dlrkikhsgv lglhsplalv
      961 nkvwfdlqlh fakrgreilr dlapdafvve kdkngrryam frypgkgkng edphkmgkmy
     1021 dmpgdpncpv fslelylskl ppeppafylh plkltseqmq eqpvwykrep mgvnylgtmm
     1081 prisvaarls qrytnhslrt ttiqllceag lgpreimavt ghrsesairh ywgaaevryr
     1141 awsdvmenna psylfskipn evikeslcga stssinqile qskilfpkks vvppgtnsvt
     1201 lvpeghraln sespvllnhs sskvfhpkkl angnltvgsl qgcgnkpvfi krvikqepmt
//
LOCUS       XP_053941622            1260 aa            linear   VRT 09-MAR-2023
DEFINITION  activating transcription factor 7-interacting protein 1 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053941622
VERSION     XP_053941622.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085647.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1260
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1260
                     /product="activating transcription factor 7-interacting
                     protein 1 isoform X3"
                     /calculated_mol_wt=138642
     Region          392..608
                     /region_name="ATF7IP_BD"
                     /note="ATF-interacting protein binding domain; pfam16788"
                     /db_xref="CDD:465271"
     Region          <503..>780
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          948..1085
                     /region_name="DUF3504"
                     /note="Domain of unknown function (DUF3504); pfam12012"
                     /db_xref="CDD:463430"
     Region          <1067..1151
                     /region_name="XerD"
                     /note="Site-specific recombinase XerD [Replication,
                     recombination and repair]; COG4974"
                     /db_xref="CDD:443999"
     CDS             1..1260
                     /gene="ATF7IP"
                     /coded_by="XM_054085647.1:265..4047"
                     /db_xref="GeneID:104055471"
ORIGIN      
        1 mdsteepqkk vfkarktmrv sdrqqleavy kvkeellktt evkllngkhd ngdsdlnspl
       61 nstdctedkr evnglvdscd kseegkpasd evsearrpes rtgnivsdve pkrpilppdn
      121 vtsgqdkdid talaseaesg lpgsnkdtfr eenkakdhld qreseipses ksksicdisn
      181 sseekgdtnn sainssslde ekktgevtie davgeaaiss smetdeepkd kqdstvglse
      241 tvfqktinep sesilgnnds metdeiipil eklapaedel scfsrtpllp advtvpdlve
      301 kpdnclaspc kqesneslpk eaflvlsdee dpcdekeera evilpnkssl peevektrek
      361 seekeealke ekhteisevs rrkrsksedi dsvhskrrry mgedyeaelq vkitarkdtd
      421 qklqkiiqrl leeklsalqc avfdktladl ktriekvecn krhktvltel qariarltkr
      481 fgaaredlkk rqedtpaepq spvkaaadta ntnnatyrnv gtvrqmlelk rnvgdntpat
      541 fqaplnstpa sslaapptav sghpkpqtpv tsttsltttv lpvpntatvv gtnqvpsgst
      601 qsvsvslqsl pvilhvpvav ssqhqllqsh tgtlvtnqqs gsvefisvqg pssvgsltkt
      661 avslastkpn nspsvpspgt qrnppasags vgtalavqav stahpvaqat rtslptvgts
      721 glysaassrt plqmkiplsa fsttpsiepp tvtaprvenq tsrppvdasa nkrtaegttq
      781 qlkqeetsse nkeaveaeqt nfnfpedvlf gleeeeedak siknthkqtg waanllkqwl
      841 akngkdpsfe lvpvselndi lrefyytirn hdgntysvas yksiraglnr hlkmppynrq
      901 iclmkdkdfs sanmvfvsvl kmlrmqgkde thhhppiaae dlrkikhsgv lglhsplalv
      961 nkvwfdlqlh fakrgreilr dlapdafvve kdkngrryam frypgkgkng edphkmgkmy
     1021 dmpgdpncpv fslelylskl ppeppafylh plkltseqmq eqpvwykrep mgvnylgtmm
     1081 prisvaarls qrytnhslrt ttiqllceag lgpreimavt ghrsesairh ywgaaevryr
     1141 awsdvmenna psylfskipn evikeslcga stssinqile qskilfpkks vvppgtnsvt
     1201 lvpeghraln sespvllnhs sskvfhpkkl angnltvgsl qgcgnkpvfi krvikqepmt
//
LOCUS       XP_053941632            1260 aa            linear   VRT 09-MAR-2023
DEFINITION  activating transcription factor 7-interacting protein 1 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053941632
VERSION     XP_053941632.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085657.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1260
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1260
                     /product="activating transcription factor 7-interacting
                     protein 1 isoform X3"
                     /calculated_mol_wt=138642
     Region          392..608
                     /region_name="ATF7IP_BD"
                     /note="ATF-interacting protein binding domain; pfam16788"
                     /db_xref="CDD:465271"
     Region          <503..>780
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          948..1085
                     /region_name="DUF3504"
                     /note="Domain of unknown function (DUF3504); pfam12012"
                     /db_xref="CDD:463430"
     Region          <1067..1151
                     /region_name="XerD"
                     /note="Site-specific recombinase XerD [Replication,
                     recombination and repair]; COG4974"
                     /db_xref="CDD:443999"
     CDS             1..1260
                     /gene="ATF7IP"
                     /coded_by="XM_054085657.1:181..3963"
                     /db_xref="GeneID:104055471"
ORIGIN      
        1 mdsteepqkk vfkarktmrv sdrqqleavy kvkeellktt evkllngkhd ngdsdlnspl
       61 nstdctedkr evnglvdscd kseegkpasd evsearrpes rtgnivsdve pkrpilppdn
      121 vtsgqdkdid talaseaesg lpgsnkdtfr eenkakdhld qreseipses ksksicdisn
      181 sseekgdtnn sainssslde ekktgevtie davgeaaiss smetdeepkd kqdstvglse
      241 tvfqktinep sesilgnnds metdeiipil eklapaedel scfsrtpllp advtvpdlve
      301 kpdnclaspc kqesneslpk eaflvlsdee dpcdekeera evilpnkssl peevektrek
      361 seekeealke ekhteisevs rrkrsksedi dsvhskrrry mgedyeaelq vkitarkdtd
      421 qklqkiiqrl leeklsalqc avfdktladl ktriekvecn krhktvltel qariarltkr
      481 fgaaredlkk rqedtpaepq spvkaaadta ntnnatyrnv gtvrqmlelk rnvgdntpat
      541 fqaplnstpa sslaapptav sghpkpqtpv tsttsltttv lpvpntatvv gtnqvpsgst
      601 qsvsvslqsl pvilhvpvav ssqhqllqsh tgtlvtnqqs gsvefisvqg pssvgsltkt
      661 avslastkpn nspsvpspgt qrnppasags vgtalavqav stahpvaqat rtslptvgts
      721 glysaassrt plqmkiplsa fsttpsiepp tvtaprvenq tsrppvdasa nkrtaegttq
      781 qlkqeetsse nkeaveaeqt nfnfpedvlf gleeeeedak siknthkqtg waanllkqwl
      841 akngkdpsfe lvpvselndi lrefyytirn hdgntysvas yksiraglnr hlkmppynrq
      901 iclmkdkdfs sanmvfvsvl kmlrmqgkde thhhppiaae dlrkikhsgv lglhsplalv
      961 nkvwfdlqlh fakrgreilr dlapdafvve kdkngrryam frypgkgkng edphkmgkmy
     1021 dmpgdpncpv fslelylskl ppeppafylh plkltseqmq eqpvwykrep mgvnylgtmm
     1081 prisvaarls qrytnhslrt ttiqllceag lgpreimavt ghrsesairh ywgaaevryr
     1141 awsdvmenna psylfskipn evikeslcga stssinqile qskilfpkks vvppgtnsvt
     1201 lvpeghraln sespvllnhs sskvfhpkkl angnltvgsl qgcgnkpvfi krvikqepmt
//
LOCUS       XP_009554889            1098 aa            linear   VRT 09-MAR-2023
DEFINITION  activating transcription factor 7-interacting protein 1 isoform X4
            [Cuculus canorus].
ACCESSION   XP_009554889
VERSION     XP_009554889.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556594.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554889.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1098
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1098
                     /product="activating transcription factor 7-interacting
                     protein 1 isoform X4"
                     /calculated_mol_wt=118076
     Region          392..608
                     /region_name="ATF7IP_BD"
                     /note="ATF-interacting protein binding domain; pfam16788"
                     /db_xref="CDD:465271"
     Region          <666..1007
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          989..1089
                     /region_name="fn3_4"
                     /note="Fibronectin-III type domain; pfam16794"
                     /db_xref="CDD:465273"
     CDS             1..1098
                     /gene="ATF7IP"
                     /coded_by="XM_009556594.2:102..3398"
                     /db_xref="GeneID:104055471"
ORIGIN      
        1 mdsteepqkk vfkarktmrv sdrqqleavy kvkeellktt evkllngkhd ngdsdlnspl
       61 nstdctedkr evnglvdscd kseegkpasd evsearrpes rtgnivsdve pkrpilppdn
      121 vtsgqdkdid talaseaesg lpgsnkdtfr eenkakdhld qreseipses ksksicdisn
      181 sseekgdtnn sainssslde ekktgevtie davgeaaiss smetdeepkd kqdstvglse
      241 tvfqktinep sesilgnnds metdeiipil eklapaedel scfsrtpllp advtvpdlve
      301 kpdnclaspc kqesneslpk eaflvlsdee dpcdekeera evilpnkssl peevektrek
      361 seekeealke ekhteisevs rrkrsksedi dsvhskrrry mgedyeaelq vkitarkdtd
      421 qklqkiiqrl leeklsalqc avfdktladl ktriekvecn krhktvltel qariarltkr
      481 fgaaredlkk rqedtpaepq spvkaaadta ntnnatyrnv gtvrqmlelk rnvgdntpat
      541 fqaplnstpa sslaapptav sghpkpqtpv tsttsltttv lpvpntatvv gtnqvpsgst
      601 qsvsvslqsl pvilhvpvav ssqhqllqsh tgtlvtnqqs gsvefisvqg pssvgsltkt
      661 avslastkpn nspsvpspgt qrnppasags vgtalavqav stahpvaqat rtslptvgts
      721 glysaassrt plqmkiplsa fsttpsiepp tvtaprvenq tsrppvdasa nkrtaegttq
      781 sakvtgsdsg gvidltldee edsssqadak kqnqtpvtgl sistqplsrs lqpmqpnpvq
      841 pagvptsgps qttihvlpta pttvnvthrp vtqtaaklpi prapanhqvv yttlpappaq
      901 npvrgavvps pglrpvnpqt ggmtvrmpqt aayvvnnglt lapgapqltv hhrpppqvha
      961 epprpihpap lpeapqpprl ppeaantspp qkpqlklarv qsqngivlsw svmevdrsca
     1021 tvdsyhlyay hedpsatmps qwkkigevka lplpmactlt qfvsgskyyf avrakdiygr
     1081 fgpfcdpqst dvissqss
//
LOCUS       XP_053941647            1097 aa            linear   VRT 09-MAR-2023
DEFINITION  activating transcription factor 7-interacting protein 1 isoform X5
            [Cuculus canorus].
ACCESSION   XP_053941647
VERSION     XP_053941647.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085672.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1097
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1097
                     /product="activating transcription factor 7-interacting
                     protein 1 isoform X5"
                     /calculated_mol_wt=118005
     Region          392..608
                     /region_name="ATF7IP_BD"
                     /note="ATF-interacting protein binding domain; pfam16788"
                     /db_xref="CDD:465271"
     Region          <666..1002
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          988..1088
                     /region_name="fn3_4"
                     /note="Fibronectin-III type domain; pfam16794"
                     /db_xref="CDD:465273"
     CDS             1..1097
                     /gene="ATF7IP"
                     /coded_by="XM_054085672.1:102..3395"
                     /db_xref="GeneID:104055471"
ORIGIN      
        1 mdsteepqkk vfkarktmrv sdrqqleavy kvkeellktt evkllngkhd ngdsdlnspl
       61 nstdctedkr evnglvdscd kseegkpasd evsearrpes rtgnivsdve pkrpilppdn
      121 vtsgqdkdid talaseaesg lpgsnkdtfr eenkakdhld qreseipses ksksicdisn
      181 sseekgdtnn sainssslde ekktgevtie davgeaaiss smetdeepkd kqdstvglse
      241 tvfqktinep sesilgnnds metdeiipil eklapaedel scfsrtpllp advtvpdlve
      301 kpdnclaspc kqesneslpk eaflvlsdee dpcdekeera evilpnkssl peevektrek
      361 seekeealke ekhteisevs rrkrsksedi dsvhskrrry mgedyeaelq vkitarkdtd
      421 qklqkiiqrl leeklsalqc avfdktladl ktriekvecn krhktvltel qariarltkr
      481 fgaaredlkk rqedtpaepq spvkaaadta ntnnatyrnv gtvrqmlelk rnvgdntpat
      541 fqaplnstpa sslaapptav sghpkpqtpv tsttsltttv lpvpntatvv gtnqvpsgst
      601 qsvsvslqsl pvilhvpvav ssqhqllqsh tgtlvtnqqs gsvefisvqg pssvgsltkt
      661 avslastkpn nspsvpspgt qrnppasags vgtalavqav stahpvaqat rtslptvgts
      721 glysaassrt plqmkiplsa fsttpsiepp tvtaprvenq tsrppvdasa nkrtaegttq
      781 sakvtgsdsg gvidltldee edsssqdakk qnqtpvtgls istqplsrsl qpmqpnpvqp
      841 agvptsgpsq ttihvlptap ttvnvthrpv tqtaaklpip rapanhqvvy ttlpappaqn
      901 pvrgavvpsp glrpvnpqtg gmtvrmpqta ayvvnngltl apgapqltvh hrpppqvhae
      961 pprpihpapl peapqpprlp peaantsppq kpqlklarvq sqngivlsws vmevdrscat
     1021 vdsyhlyayh edpsatmpsq wkkigevkal plpmactltq fvsgskyyfa vrakdiygrf
     1081 gpfcdpqstd vissqss
//
LOCUS       XP_053941655            1260 aa            linear   VRT 09-MAR-2023
DEFINITION  activating transcription factor 7-interacting protein 1 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053941655
VERSION     XP_053941655.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085680.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1260
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1260
                     /product="activating transcription factor 7-interacting
                     protein 1 isoform X3"
                     /calculated_mol_wt=138642
     Region          392..608
                     /region_name="ATF7IP_BD"
                     /note="ATF-interacting protein binding domain; pfam16788"
                     /db_xref="CDD:465271"
     Region          <503..>780
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          948..1085
                     /region_name="DUF3504"
                     /note="Domain of unknown function (DUF3504); pfam12012"
                     /db_xref="CDD:463430"
     Region          <1067..1151
                     /region_name="XerD"
                     /note="Site-specific recombinase XerD [Replication,
                     recombination and repair]; COG4974"
                     /db_xref="CDD:443999"
     CDS             1..1260
                     /gene="ATF7IP"
                     /coded_by="XM_054085680.1:166..3948"
                     /db_xref="GeneID:104055471"
ORIGIN      
        1 mdsteepqkk vfkarktmrv sdrqqleavy kvkeellktt evkllngkhd ngdsdlnspl
       61 nstdctedkr evnglvdscd kseegkpasd evsearrpes rtgnivsdve pkrpilppdn
      121 vtsgqdkdid talaseaesg lpgsnkdtfr eenkakdhld qreseipses ksksicdisn
      181 sseekgdtnn sainssslde ekktgevtie davgeaaiss smetdeepkd kqdstvglse
      241 tvfqktinep sesilgnnds metdeiipil eklapaedel scfsrtpllp advtvpdlve
      301 kpdnclaspc kqesneslpk eaflvlsdee dpcdekeera evilpnkssl peevektrek
      361 seekeealke ekhteisevs rrkrsksedi dsvhskrrry mgedyeaelq vkitarkdtd
      421 qklqkiiqrl leeklsalqc avfdktladl ktriekvecn krhktvltel qariarltkr
      481 fgaaredlkk rqedtpaepq spvkaaadta ntnnatyrnv gtvrqmlelk rnvgdntpat
      541 fqaplnstpa sslaapptav sghpkpqtpv tsttsltttv lpvpntatvv gtnqvpsgst
      601 qsvsvslqsl pvilhvpvav ssqhqllqsh tgtlvtnqqs gsvefisvqg pssvgsltkt
      661 avslastkpn nspsvpspgt qrnppasags vgtalavqav stahpvaqat rtslptvgts
      721 glysaassrt plqmkiplsa fsttpsiepp tvtaprvenq tsrppvdasa nkrtaegttq
      781 qlkqeetsse nkeaveaeqt nfnfpedvlf gleeeeedak siknthkqtg waanllkqwl
      841 akngkdpsfe lvpvselndi lrefyytirn hdgntysvas yksiraglnr hlkmppynrq
      901 iclmkdkdfs sanmvfvsvl kmlrmqgkde thhhppiaae dlrkikhsgv lglhsplalv
      961 nkvwfdlqlh fakrgreilr dlapdafvve kdkngrryam frypgkgkng edphkmgkmy
     1021 dmpgdpncpv fslelylskl ppeppafylh plkltseqmq eqpvwykrep mgvnylgtmm
     1081 prisvaarls qrytnhslrt ttiqllceag lgpreimavt ghrsesairh ywgaaevryr
     1141 awsdvmenna psylfskipn evikeslcga stssinqile qskilfpkks vvppgtnsvt
     1201 lvpeghraln sespvllnhs sskvfhpkkl angnltvgsl qgcgnkpvfi krvikqepmt
//
LOCUS       XP_053941664            1096 aa            linear   VRT 09-MAR-2023
DEFINITION  activating transcription factor 7-interacting protein 1 isoform X6
            [Cuculus canorus].
ACCESSION   XP_053941664
VERSION     XP_053941664.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085689.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1096
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1096
                     /product="activating transcription factor 7-interacting
                     protein 1 isoform X6"
                     /calculated_mol_wt=117876
     Region          391..607
                     /region_name="ATF7IP_BD"
                     /note="ATF-interacting protein binding domain; pfam16788"
                     /db_xref="CDD:465271"
     Region          <665..1001
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          987..1087
                     /region_name="fn3_4"
                     /note="Fibronectin-III type domain; pfam16794"
                     /db_xref="CDD:465273"
     CDS             1..1096
                     /gene="ATF7IP"
                     /coded_by="XM_054085689.1:102..3392"
                     /db_xref="GeneID:104055471"
ORIGIN      
        1 mdsteepqkk vfkarktmrv sdrqqleavy kvkeellktt evkllngkhd ngdsdlnspl
       61 nstdctedkr evnglvdscd kseegkpasd evsearrpes rtgnivsdve pkrpilppdn
      121 vtsgqdkdid talaseaesg lpgsnkdtfr eenkakdhld qreseipses ksksicdisn
      181 sseekgdtnn sainssslde ekktgevtie davgeaaiss smetdeepkd kqdstvglse
      241 tvfqktinep sesilgnnds metdeiipil eklapaedel scfsrtpllp advtvpdlve
      301 kpdnclaspc kqesneslpk eaflvlsdee dpcdekeera evilpnkssl pevektreks
      361 eekeealkee khteisevsr rkrsksedid svhskrrrym gedyeaelqv kitarkdtdq
      421 klqkiiqrll eeklsalqca vfdktladlk triekvecnk rhktvltelq ariarltkrf
      481 gaaredlkkr qedtpaepqs pvkaaadtan tnnatyrnvg tvrqmlelkr nvgdntpatf
      541 qaplnstpas slaapptavs ghpkpqtpvt sttsltttvl pvpntatvvg tnqvpsgstq
      601 svsvslqslp vilhvpvavs sqhqllqsht gtlvtnqqsg svefisvqgp ssvgsltkta
      661 vslastkpnn spsvpspgtq rnppasagsv gtalavqavs tahpvaqatr tslptvgtsg
      721 lysaassrtp lqmkiplsaf sttpsieppt vtaprvenqt srppvdasan krtaegttqs
      781 akvtgsdsgg vidltldeee dsssqdakkq nqtpvtglsi stqplsrslq pmqpnpvqpa
      841 gvptsgpsqt tihvlptapt tvnvthrpvt qtaaklpipr apanhqvvyt tlpappaqnp
      901 vrgavvpspg lrpvnpqtgg mtvrmpqtaa yvvnngltla pgapqltvhh rpppqvhaep
      961 prpihpaplp eapqpprlpp eaantsppqk pqlklarvqs qngivlswsv mevdrscatv
     1021 dsyhlyayhe dpsatmpsqw kkigevkalp lpmactltqf vsgskyyfav rakdiygrfg
     1081 pfcdpqstdv issqss
//
LOCUS       XP_053941675             539 aa            linear   VRT 09-MAR-2023
DEFINITION  phospholipase B-like 1 [Cuculus canorus].
ACCESSION   XP_053941675
VERSION     XP_053941675.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085700.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..539
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..539
                     /product="phospholipase B-like 1"
                     /calculated_mol_wt=61525
     Region          49..535
                     /region_name="Phospholip_B"
                     /note="Phospholipase B; pfam04916"
                     /db_xref="CDD:461479"
     CDS             1..539
                     /gene="PLBD1"
                     /coded_by="XM_054085700.1:95..1714"
                     /db_xref="GeneID:104055522"
ORIGIN      
        1 marlgaccwg lallcaaagr aeiryaavfw nraektlqvk nildrsgday gfynntvqtt
       61 gwgvleirag ygtqtlsnee imyvagfleg yltaphmydh aanmypqlik nptvrrgvqn
      121 fmakqdqwtr qqirnnkddp fwrhagyiia qldglymgal ewaklhkqtp lsifdvqfln
      181 avgdlldlip alfeysarsg qcnvesgshg kyqwdmghcs alikvlpgye niyfahsswf
      241 tyaatlriyk hwnfnivdpd tstsrvsfss ypgflvsldd fyilgsglvm lqttnsvfne
      301 tlmkqvvpes llawqrvria nmmandgktw aetfskcnsg tynnqymvld lkkvrlqksl
      361 ddgalyvveq iptlveysdq tnvlrkgywp synipfheki ynlsgyaayv ekygmdfsye
      421 laprakifrr dqgkvtnles mkylmrynny qrdpytehnp cnticcredl npsfpvpagc
      481 ydskvsdfrl asaftatain gppvqgglpv ftwkqfnhtr hqglpesynf rfitmrpil
//
LOCUS       XP_053941689             275 aa            linear   VRT 09-MAR-2023
DEFINITION  cell surface glycoprotein CD200 receptor 1-B [Cuculus canorus].
ACCESSION   XP_053941689
VERSION     XP_053941689.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085714.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..275
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..275
                     /product="cell surface glycoprotein CD200 receptor 1-B"
                     /calculated_mol_wt=30159
     Region          51..149
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          59..63
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409577"
     Region          71..75
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409577"
     Region          114..118
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409577"
     Region          128..133
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409577"
     Region          141..144
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409577"
     Region          <166..228
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          176..180
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          201..205
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          212..217
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..275
                     /gene="LOC104055845"
                     /coded_by="XM_054085714.1:176..1003"
                     /db_xref="GeneID:104055845"
ORIGIN      
        1 mmgssqqagw cqkptsptea raalkvvrkt tyiivlltia vatelteykr vsetvgkssv
       61 ltcspksdti matwrisskv ggfctlgyra dvnktkranc sdsvdwkfrp dqdlaleirq
      121 vgiadegnyt cqlieldgnf wktyhltvlv pprlilscdd hgnpvckaat gkpaaqiswv
      181 lesnstseee dhvngtvtvl srftaystnm inmtcivshp tgnqsksivc qpprngahfl
      241 hcvislasll sllfllavlh lciccdsrir rrayv
//
LOCUS       XP_053941705             481 aa            linear   VRT 09-MAR-2023
DEFINITION  ataxin-10 isoform X1 [Cuculus canorus].
ACCESSION   XP_053941705
VERSION     XP_053941705.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085730.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..481
                     /product="ataxin-10 isoform X1"
                     /calculated_mol_wt=53581
     Region          377..474
                     /region_name="Atx10homo_assoc"
                     /note="Spinocerebellar ataxia type 10 protein domain;
                     pfam09759"
                     /db_xref="CDD:462885"
     CDS             1..481
                     /gene="ATXN10"
                     /coded_by="XM_054085730.1:29..1474"
                     /db_xref="GeneID:104062832"
ORIGIN      
        1 maalgagava aaaaqlesam agtaterqer vkelsilfre aqaremaees ifwnvleilk
       61 sasseieqty kdscelvdld tclllvaecf rclrnacvec aknqhvmrnl glistsvhli
      121 klllriqike ellltalrcs lqflgniaag ngdsqnsiwk cafpdlfltf ltysdekiva
      181 yccmvlftcl nsekvrelln pgnltvavhv lkvykeqlet ewsflivtdh llkcpelvka
      241 lyaklsnqer vtllelmmak vseknpatse emnviarhae flagcfqekc eavlkltsaa
      301 daedeealit irlldvlcem tsnngqlehl qtlpglleaa idtlrlthla gkqavnifta
      361 thamtgqeei shpavgfksh lirlignlcy knkenqdrvy eldgiplild ncsiddnnpf
      421 vnqwavyair nlteqneriq dliaqmeekg ladnsalesm gleiekrndk lilksvrkkt
      481 s
//
LOCUS       XP_053941714             446 aa            linear   VRT 09-MAR-2023
DEFINITION  ataxin-10 isoform X2 [Cuculus canorus].
ACCESSION   XP_053941714
VERSION     XP_053941714.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085739.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..446
                     /product="ataxin-10 isoform X2"
                     /calculated_mol_wt=50191
     Region          342..439
                     /region_name="Atx10homo_assoc"
                     /note="Spinocerebellar ataxia type 10 protein domain;
                     pfam09759"
                     /db_xref="CDD:462885"
     CDS             1..446
                     /gene="ATXN10"
                     /coded_by="XM_054085739.1:113..1453"
                     /db_xref="GeneID:104062832"
ORIGIN      
        1 msrslyntre maeesifwnv leilksasse ieqtykdsce lvdldtclll vaecfrclrn
       61 acvecaknqh vmrnlglist svhliklllr iqikeelllt alrcslqflg niaagngdsq
      121 nsiwkcafpd lfltfltysd ekivayccmv lftclnsekv rellnpgnlt vavhvlkvyk
      181 eqletewsfl ivtdhllkcp elvkalyakl snqervtlle lmmakvsekn patseemnvi
      241 arhaeflagc fqekceavlk ltsaadaede ealitirlld vlcemtsnng qlehlqtlpg
      301 lleaaidtlr lthlagkqav niftathamt gqeeishpav gfkshlirli gnlcyknken
      361 qdrvyeldgi plildncsid dnnpfvnqwa vyairnlteq neriqdliaq meekgladns
      421 alesmgleie krndklilks vrkkts
//
LOCUS       XP_053941721             436 aa            linear   VRT 09-MAR-2023
DEFINITION  ataxin-10 isoform X3 [Cuculus canorus].
ACCESSION   XP_053941721
VERSION     XP_053941721.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085746.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..436
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..436
                     /product="ataxin-10 isoform X3"
                     /calculated_mol_wt=48953
     Region          332..429
                     /region_name="Atx10homo_assoc"
                     /note="Spinocerebellar ataxia type 10 protein domain;
                     pfam09759"
                     /db_xref="CDD:462885"
     CDS             1..436
                     /gene="ATXN10"
                     /coded_by="XM_054085746.1:115..1425"
                     /db_xref="GeneID:104062832"
ORIGIN      
        1 maeesifwnv leilksasse ieqtykdsce lvdldtclll vaecfrclrn acvecaknqh
       61 vmrnlglist svhliklllr iqikeelllt alrcslqflg niaagngdsq nsiwkcafpd
      121 lfltfltysd ekivayccmv lftclnsekv rellnpgnlt vavhvlkvyk eqletewsfl
      181 ivtdhllkcp elvkalyakl snqervtlle lmmakvsekn patseemnvi arhaeflagc
      241 fqekceavlk ltsaadaede ealitirlld vlcemtsnng qlehlqtlpg lleaaidtlr
      301 lthlagkqav niftathamt gqeeishpav gfkshlirli gnlcyknken qdrvyeldgi
      361 plildncsid dnnpfvnqwa vyairnlteq neriqdliaq meekgladns alesmgleie
      421 krndklilks vrkkts
//
LOCUS       XP_053941734             670 aa            linear   VRT 09-MAR-2023
DEFINITION  HMG domain-containing protein 4 isoform X1 [Cuculus canorus].
ACCESSION   XP_053941734
VERSION     XP_053941734.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085759.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..670
                     /product="HMG domain-containing protein 4 isoform X1"
                     /calculated_mol_wt=75916
     Region          101..221
                     /region_name="DUF4171"
                     /note="Domain of unknown function (DUF4171); pfam13775"
                     /db_xref="CDD:463979"
     Region          476..536
                     /region_name="HMG-box_HMGXB4"
                     /note="high mobility group (HMG)-box found in HMG
                     domain-containing protein 4 (HMGXB4) and similar proteins;
                     cd21982"
                     /db_xref="CDD:438798"
     Site            order(477..478,480..484,487..488,495,507..508,511,
                     514..515,522,526,529,533,536)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438798"
     CDS             1..670
                     /gene="HMGXB4"
                     /coded_by="XM_054085759.1:214..2226"
                     /db_xref="GeneID:104065898"
ORIGIN      
        1 mayddskkkg eflesdrsvd dvelatgriq rekkrpykdl lqeedevatq dselfpgtep
       61 hkkkrkhssd efcyrgvlpl dlpskkkkkt vsspssadat mdvlkaitsp latssksskk
      121 tsekssysss ghseskkehh kkklsgssge hsvddgsfhk skkmkplyvn tetltlrepd
      181 glkmklilsp kekssaaddd syssapaaak ksskksarde qgsfllghel qsflkssrkk
      241 hkslpdqhpp senfgadtsh fseghgteye iagmeappes gsssggelea gelviddsyr
      301 eikkkkkskk skkkkdkekh rekkhskskk ssghgpvava evspppppst syvlppppav
      361 phsdgqgekr rkkddkekdk aekwekerer erererekek ererekerer ererererer
      421 ererererer ekererekek erekekeker ekerereker erekereker erekpkkknm
      481 sayqvfckey rttivsehpg idfgelskkl aevwkqlpek dkliwkqkaq ylqhkqnkae
      541 attvkrkass sdgapkmkas ptgvisphkk sptsnvvvps spakvpetdp idvaahlqll
      601 geslslighr lqetegmvav sgslsvllds iicalgpltc lttqlpelng cpkhvlsntl
      661 dniayimpgl
//
LOCUS       XP_053941744             670 aa            linear   VRT 09-MAR-2023
DEFINITION  HMG domain-containing protein 4 isoform X1 [Cuculus canorus].
ACCESSION   XP_053941744
VERSION     XP_053941744.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085769.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..670
                     /product="HMG domain-containing protein 4 isoform X1"
                     /calculated_mol_wt=75916
     Region          101..221
                     /region_name="DUF4171"
                     /note="Domain of unknown function (DUF4171); pfam13775"
                     /db_xref="CDD:463979"
     Region          476..536
                     /region_name="HMG-box_HMGXB4"
                     /note="high mobility group (HMG)-box found in HMG
                     domain-containing protein 4 (HMGXB4) and similar proteins;
                     cd21982"
                     /db_xref="CDD:438798"
     Site            order(477..478,480..484,487..488,495,507..508,511,
                     514..515,522,526,529,533,536)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438798"
     CDS             1..670
                     /gene="HMGXB4"
                     /coded_by="XM_054085769.1:199..2211"
                     /db_xref="GeneID:104065898"
ORIGIN      
        1 mayddskkkg eflesdrsvd dvelatgriq rekkrpykdl lqeedevatq dselfpgtep
       61 hkkkrkhssd efcyrgvlpl dlpskkkkkt vsspssadat mdvlkaitsp latssksskk
      121 tsekssysss ghseskkehh kkklsgssge hsvddgsfhk skkmkplyvn tetltlrepd
      181 glkmklilsp kekssaaddd syssapaaak ksskksarde qgsfllghel qsflkssrkk
      241 hkslpdqhpp senfgadtsh fseghgteye iagmeappes gsssggelea gelviddsyr
      301 eikkkkkskk skkkkdkekh rekkhskskk ssghgpvava evspppppst syvlppppav
      361 phsdgqgekr rkkddkekdk aekwekerer erererekek ererekerer ererererer
      421 ererererer ekererekek erekekeker ekerereker erekereker erekpkkknm
      481 sayqvfckey rttivsehpg idfgelskkl aevwkqlpek dkliwkqkaq ylqhkqnkae
      541 attvkrkass sdgapkmkas ptgvisphkk sptsnvvvps spakvpetdp idvaahlqll
      601 geslslighr lqetegmvav sgslsvllds iicalgpltc lttqlpelng cpkhvlsntl
      661 dniayimpgl
//
LOCUS       XP_053941754             666 aa            linear   VRT 09-MAR-2023
DEFINITION  HMG domain-containing protein 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053941754
VERSION     XP_053941754.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085779.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..666
                     /product="HMG domain-containing protein 4 isoform X2"
                     /calculated_mol_wt=75516
     Region          97..217
                     /region_name="DUF4171"
                     /note="Domain of unknown function (DUF4171); pfam13775"
                     /db_xref="CDD:463979"
     Region          472..532
                     /region_name="HMG-box_HMGXB4"
                     /note="high mobility group (HMG)-box found in HMG
                     domain-containing protein 4 (HMGXB4) and similar proteins;
                     cd21982"
                     /db_xref="CDD:438798"
     Site            order(473..474,476..480,483..484,491,503..504,507,
                     510..511,518,522,525,529,532)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438798"
     CDS             1..666
                     /gene="HMGXB4"
                     /coded_by="XM_054085779.1:214..2214"
                     /db_xref="GeneID:104065898"
ORIGIN      
        1 mayddskkkg eflesdrsvd dvelatgriq rekkrpykdl lqeededsel fpgtephkkk
       61 rkhssdefcy rgvlpldlps kkkkktvssp ssadatmdvl kaitsplats sksskktsek
      121 ssysssghse skkehhkkkl sgssgehsvd dgsfhkskkm kplyvntetl tlrepdglkm
      181 klilspkeks saadddsyss apaaakkssk ksardeqgsf llghelqsfl kssrkkhksl
      241 pdqhppsenf gadtshfseg hgteyeiagm eappesgsss ggeleagelv iddsyreikk
      301 kkkskkskkk kdkekhrekk hskskkssgh gpvavaevsp ppppstsyvl ppppavphsd
      361 gqgekrrkkd dkekdkaekw ekerererer erekekerer ekerererer ererererer
      421 ererereker erekekerek ekekereker erekererek erekererek pkkknmsayq
      481 vfckeyrtti vsehpgidfg elskklaevw kqlpekdkli wkqkaqylqh kqnkaeattv
      541 krkasssdga pkmkasptgv isphkkspts nvvvpsspak vpetdpidva ahlqllgesl
      601 slighrlqet egmvavsgsl svlldsiica lgpltclttq lpelngcpkh vlsntldnia
      661 yimpgl
//
LOCUS       XP_053941760             570 aa            linear   VRT 09-MAR-2023
DEFINITION  HMG domain-containing protein 4 isoform X3 [Cuculus canorus].
ACCESSION   XP_053941760
VERSION     XP_053941760.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085785.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..570
                     /product="HMG domain-containing protein 4 isoform X3"
                     /calculated_mol_wt=64531
     Region          1..121
                     /region_name="DUF4171"
                     /note="Domain of unknown function (DUF4171); pfam13775"
                     /db_xref="CDD:463979"
     Region          376..436
                     /region_name="HMG-box_HMGXB4"
                     /note="high mobility group (HMG)-box found in HMG
                     domain-containing protein 4 (HMGXB4) and similar proteins;
                     cd21982"
                     /db_xref="CDD:438798"
     Site            order(377..378,380..384,387..388,395,407..408,411,
                     414..415,422,426,429,433,436)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438798"
     CDS             1..570
                     /gene="HMGXB4"
                     /coded_by="XM_054085785.1:435..2147"
                     /db_xref="GeneID:104065898"
ORIGIN      
        1 mdvlkaitsp latssksskk tsekssysss ghseskkehh kkklsgssge hsvddgsfhk
       61 skkmkplyvn tetltlrepd glkmklilsp kekssaaddd syssapaaak ksskksarde
      121 qgsfllghel qsflkssrkk hkslpdqhpp senfgadtsh fseghgteye iagmeappes
      181 gsssggelea gelviddsyr eikkkkkskk skkkkdkekh rekkhskskk ssghgpvava
      241 evspppppst syvlppppav phsdgqgekr rkkddkekdk aekwekerer erererekek
      301 ererekerer ererererer ererererer ekererekek erekekeker ekerereker
      361 erekereker erekpkkknm sayqvfckey rttivsehpg idfgelskkl aevwkqlpek
      421 dkliwkqkaq ylqhkqnkae attvkrkass sdgapkmkas ptgvisphkk sptsnvvvps
      481 spakvpetdp idvaahlqll geslslighr lqetegmvav sgslsvllds iicalgpltc
      541 lttqlpelng cpkhvlsntl dniayimpgl
//
LOCUS       XP_053941764             570 aa            linear   VRT 09-MAR-2023
DEFINITION  HMG domain-containing protein 4 isoform X3 [Cuculus canorus].
ACCESSION   XP_053941764
VERSION     XP_053941764.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085789.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..570
                     /product="HMG domain-containing protein 4 isoform X3"
                     /calculated_mol_wt=64531
     Region          1..121
                     /region_name="DUF4171"
                     /note="Domain of unknown function (DUF4171); pfam13775"
                     /db_xref="CDD:463979"
     Region          376..436
                     /region_name="HMG-box_HMGXB4"
                     /note="high mobility group (HMG)-box found in HMG
                     domain-containing protein 4 (HMGXB4) and similar proteins;
                     cd21982"
                     /db_xref="CDD:438798"
     Site            order(377..378,380..384,387..388,395,407..408,411,
                     414..415,422,426,429,433,436)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438798"
     CDS             1..570
                     /gene="HMGXB4"
                     /coded_by="XM_054085789.1:423..2135"
                     /db_xref="GeneID:104065898"
ORIGIN      
        1 mdvlkaitsp latssksskk tsekssysss ghseskkehh kkklsgssge hsvddgsfhk
       61 skkmkplyvn tetltlrepd glkmklilsp kekssaaddd syssapaaak ksskksarde
      121 qgsfllghel qsflkssrkk hkslpdqhpp senfgadtsh fseghgteye iagmeappes
      181 gsssggelea gelviddsyr eikkkkkskk skkkkdkekh rekkhskskk ssghgpvava
      241 evspppppst syvlppppav phsdgqgekr rkkddkekdk aekwekerer erererekek
      301 ererekerer ererererer ererererer ekererekek erekekeker ekerereker
      361 erekereker erekpkkknm sayqvfckey rttivsehpg idfgelskkl aevwkqlpek
      421 dkliwkqkaq ylqhkqnkae attvkrkass sdgapkmkas ptgvisphkk sptsnvvvps
      481 spakvpetdp idvaahlqll geslslighr lqetegmvav sgslsvllds iicalgpltc
      541 lttqlpelng cpkhvlsntl dniayimpgl
//
LOCUS       XP_053941768             570 aa            linear   VRT 09-MAR-2023
DEFINITION  HMG domain-containing protein 4 isoform X3 [Cuculus canorus].
ACCESSION   XP_053941768
VERSION     XP_053941768.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085793.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..570
                     /product="HMG domain-containing protein 4 isoform X3"
                     /calculated_mol_wt=64531
     Region          1..121
                     /region_name="DUF4171"
                     /note="Domain of unknown function (DUF4171); pfam13775"
                     /db_xref="CDD:463979"
     Region          376..436
                     /region_name="HMG-box_HMGXB4"
                     /note="high mobility group (HMG)-box found in HMG
                     domain-containing protein 4 (HMGXB4) and similar proteins;
                     cd21982"
                     /db_xref="CDD:438798"
     Site            order(377..378,380..384,387..388,395,407..408,411,
                     414..415,422,426,429,433,436)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438798"
     CDS             1..570
                     /gene="HMGXB4"
                     /coded_by="XM_054085793.1:291..2003"
                     /db_xref="GeneID:104065898"
ORIGIN      
        1 mdvlkaitsp latssksskk tsekssysss ghseskkehh kkklsgssge hsvddgsfhk
       61 skkmkplyvn tetltlrepd glkmklilsp kekssaaddd syssapaaak ksskksarde
      121 qgsfllghel qsflkssrkk hkslpdqhpp senfgadtsh fseghgteye iagmeappes
      181 gsssggelea gelviddsyr eikkkkkskk skkkkdkekh rekkhskskk ssghgpvava
      241 evspppppst syvlppppav phsdgqgekr rkkddkekdk aekwekerer erererekek
      301 ererekerer ererererer ererererer ekererekek erekekeker ekerereker
      361 erekereker erekpkkknm sayqvfckey rttivsehpg idfgelskkl aevwkqlpek
      421 dkliwkqkaq ylqhkqnkae attvkrkass sdgapkmkas ptgvisphkk sptsnvvvps
      481 spakvpetdp idvaahlqll geslslighr lqetegmvav sgslsvllds iicalgpltc
      541 lttqlpelng cpkhvlsntl dniayimpgl
//
LOCUS       XP_053941781             479 aa            linear   VRT 09-MAR-2023
DEFINITION  protein C-ets-2 [Cuculus canorus].
ACCESSION   XP_053941781
VERSION     XP_053941781.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085806.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..479
                     /product="protein C-ets-2"
                     /calculated_mol_wt=54255
     Region          88..176
                     /region_name="SAM_PNT-ETS-2"
                     /note="Sterile alpha motif (SAM)/Pointed domain of ETS-2;
                     cd08543"
                     /db_xref="CDD:188884"
     Region          207..372
                     /region_name="Ets1_N_flank"
                     /note="Ets1 N-terminal flanking region of Ets domain;
                     pfam19525"
                     /db_xref="CDD:466113"
     Region          372..456
                     /region_name="ETS"
                     /note="erythroblast transformation specific domain;
                     smart00413"
                     /db_xref="CDD:197710"
     CDS             1..479
                     /gene="ETS2"
                     /coded_by="XM_054085806.1:261..1700"
                     /db_xref="GeneID:104059227"
ORIGIN      
        1 msdfgirnmd qvapvsnvyr gmlkrqpafd tfdssnslfg gyffslnedq tlqevptgfd
       61 stsyesnnce lplltpcska vmsqalkdtf sgftkeqcrl gipnnpwlwt eqqvcqwlsw
      121 atnefslanv nfhqflmsgq dlcnlgkerf lelapdyvgd ilwehleqmi kdsqektqdq
      181 ygenshltsv phwvnnnslt vnvdqnsygm qmpgypkals ypkpslltdv cqtstganll
      241 gpeqefslfp ktqadavgvn ycavnqdfpr snlnllmdns gklrehessd sgaesyessd
      301 smlqswnsqs slvdlqrvps yesfeddcsq slclskptms fkdyiqersd pveqgkpvip
      361 aailagftgs gpiqlwqfll elltdkscqs fiswtgdgwe fkladpdeva rrwgrrknkp
      421 kmnyeklsrg lryyydknii hktsgkryvy rfvcdlqnll gytaeelham lgvqpdted
//
LOCUS       XP_053941796             856 aa            linear   VRT 09-MAR-2023
DEFINITION  heat shock protein 105 kDa isoform X1 [Cuculus canorus].
ACCESSION   XP_053941796
VERSION     XP_053941796.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085821.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..856
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..856
                     /product="heat shock protein 105 kDa isoform X1"
                     /calculated_mol_wt=96072
     Region          2..381
                     /region_name="ASKHA_NBD_HSP70_HSPH1"
                     /note="nucleotide-binding domain (NBD) of heat shock
                     105kDa/110kDa protein 1 (HSPH1) and similar proteins;
                     cd11739"
                     /db_xref="CDD:466845"
     CDS             1..856
                     /gene="HSPH1"
                     /coded_by="XM_054085821.1:141..2711"
                     /db_xref="GeneID:104064173"
ORIGIN      
        1 mavvgfdlgf qscyiavara ggietvanef sdrctpsvvs fgsknraigv saknqqitha
       61 hntvsnfkrf hgrafndpfv qkekeklsyd lvpmknggvg vkvmymdeeh ifsveqisam
      121 lltklketae snlkkpvtdc visvpsfftd aerrslldaa qivglnclrl mndmtavaln
      181 ygiykqdlpa peekprivvf vdmghsafqv sacafnkskl kvlgtafdpf lggrnfdgkl
      241 vdyfcteika kykldpkakv rallrlyqec eklkklmssn stdiplniec fmndtdvtgk
      301 mnrsqfeelc adllqrievp llslmeqtql kveditavei vggatripav keriakffgk
      361 dvsttlnade aiargcalqc ailspafkvr efsvtdatpf pisllwntea edtegvhevf
      421 srnhpapfsk vltfyrkgpf eleafysdpn gvpypeskig ryviqnvaaq kdgekskvkv
      481 kvrvnthgif svstasmvep vkseesedvc vetevesqdq rpienssdkn iqqenseagt
      541 qsqvqtdgqq tsqsppssep pseenkipdv kktnekkgdq ppeakkpkik vknvelpiea
      601 nlvwqlgkdl lnmyietegk mimqdkleke rndaknavee yvyefrdkls gpyekfvcek
      661 dlqgfsallt etegwlyeeg edeakqvyvd kledlkklgt piemryqeae erpklleelg
      721 hrlqyyatia gefrnkdeky ihidememmk vekcvsevae wmnnavsaqa kksldqdpav
      781 hsseikaklq elnnvcepvv tqpkpkvdsp keetplners dyktedmged dknsempqqn
      841 gechpsdqnt vsmdld
//
LOCUS       XP_053941805             812 aa            linear   VRT 09-MAR-2023
DEFINITION  heat shock protein 105 kDa isoform X2 [Cuculus canorus].
ACCESSION   XP_053941805
VERSION     XP_053941805.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085830.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..812
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..812
                     /product="heat shock protein 105 kDa isoform X2"
                     /calculated_mol_wt=91308
     Region          2..381
                     /region_name="ASKHA_NBD_HSP70_HSPH1"
                     /note="nucleotide-binding domain (NBD) of heat shock
                     105kDa/110kDa protein 1 (HSPH1) and similar proteins;
                     cd11739"
                     /db_xref="CDD:466845"
     CDS             1..812
                     /gene="HSPH1"
                     /coded_by="XM_054085830.1:141..2579"
                     /db_xref="GeneID:104064173"
ORIGIN      
        1 mavvgfdlgf qscyiavara ggietvanef sdrctpsvvs fgsknraigv saknqqitha
       61 hntvsnfkrf hgrafndpfv qkekeklsyd lvpmknggvg vkvmymdeeh ifsveqisam
      121 lltklketae snlkkpvtdc visvpsfftd aerrslldaa qivglnclrl mndmtavaln
      181 ygiykqdlpa peekprivvf vdmghsafqv sacafnkskl kvlgtafdpf lggrnfdgkl
      241 vdyfcteika kykldpkakv rallrlyqec eklkklmssn stdiplniec fmndtdvtgk
      301 mnrsqfeelc adllqrievp llslmeqtql kveditavei vggatripav keriakffgk
      361 dvsttlnade aiargcalqc ailspafkvr efsvtdatpf pisllwntea edtegvhevf
      421 srnhpapfsk vltfyrkgpf eleafysdpn gvpypeskig ryviqnvaaq kdgekskvkv
      481 kvrvnthgif svstasmvep vkseesedvc vetevesqdq rpienssdtn ekkgdqppea
      541 kkpkikvknv elpieanlvw qlgkdllnmy ietegkmimq dklekernda knaveeyvye
      601 frdklsgpye kfvcekdlqg fsallteteg wlyeegedea kqvyvdkled lkklgtpiem
      661 ryqeaeerpk lleelghrlq yyatiagefr nkdekyihid ememmkvekc vsevaewmnn
      721 avsaqakksl dqdpavhsse ikaklqelnn vcepvvtqpk pkvdspkeet plnersdykt
      781 edmgeddkns empqqngech psdqntvsmd ld
//
LOCUS       XP_009564788             544 aa            linear   VRT 09-MAR-2023
DEFINITION  high affinity choline transporter 1 [Cuculus canorus].
ACCESSION   XP_009564788
VERSION     XP_009564788.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566493.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..544
                     /product="high affinity choline transporter 1"
                     /calculated_mol_wt=58876
     Region          8..494
                     /region_name="SLC5sbd_CHT"
                     /note="Na(+)- and Cl(-)-dependent choline cotransporter
                     CHT and related proteins; solute-binding domain; cd11474"
                     /db_xref="CDD:271368"
     Site            order(60,63,343,346..347)
                     /site_type="other"
                     /note="Na binding site [ion binding]"
                     /db_xref="CDD:271368"
     CDS             1..544
                     /gene="LOC104064189"
                     /coded_by="XM_009566493.2:1..1635"
                     /db_xref="GeneID:104064189"
ORIGIN      
        1 malnipglvs lsvfftltla igiwaswksk kdeqnrnpte maiiggrnin vfiglftata
       61 twvggaying taeiiylpsk gllwvqapvg falslviggf ffvnpmrskn yvtvmdplqe
      121 nygnvmgsll fippllgevf wfaailaslg atmkvildig salaiiisac tvilytlmgg
      181 lysvaytdvi qlvfitlslw vcipfalvns atksiyytat hqsyqdawig kiekqylgrw
      241 lddflylvlg sipwqtyfqr vlsaaspgqa rlisylsglg cfsmaipsvl igavaastdw
      301 nqtryglpsp lergesamil plvlrylcpa yvsiaglgai aaaamssads allsagsmfa
      361 hniyrkilrk kateaevlwa mrismlvfga gaaglafyss svydlwflsg elvyallfpq
      421 lccalfapst ntygsaagfl vglllrllag epalsippvi cypacslvng tysqlfpfkt
      481 ftmlltlgti iavsylalvl fqrnllprrw dvcnimggts tliplqqrek qmgspaiale
      541 ekld
//
LOCUS       XP_009555490             363 aa            linear   VRT 09-MAR-2023
DEFINITION  pituitary-specific positive transcription factor 1 isoform X1
            [Cuculus canorus].
ACCESSION   XP_009555490
VERSION     XP_009555490.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557195.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..363
                     /product="pituitary-specific positive transcription factor
                     1 isoform X1"
                     /calculated_mol_wt=40115
     Region          195..269
                     /region_name="POU"
                     /note="Found in Pit-Oct-Unc transcription factors;
                     smart00352"
                     /db_xref="CDD:197673"
     Region          286..342
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     CDS             1..363
                     /gene="POU1F1"
                     /coded_by="XM_009557195.2:1..1092"
                     /db_xref="GeneID:104055994"
ORIGIN      
        1 mtcqafassd tfvplnsdss pslplimhhs aaeclavsnh atnvvstvps vlslirtpic
       61 sctrgavatl gnalaglhys vpscpygnqp stygvmagik patpemlsas lsqsrilqtc
      121 smphpnvvns vstlqssltp clykfpehal sasscalghg ftpmhqsllt ddptatdfkq
      181 efrrksksie epvdmdspei relekfanef klrriklgyt qtnvgealaa vhgsefsqtt
      241 icrfenlqls fknacklksi lskwleeaeq vgalynekvg vnerkrkrrt tisiaakeal
      301 erhfgeqskp ssqeimrmae glnlekevvr vwfcnrrqre krvktslhqn tfssiikehh
      361 ecr
//
LOCUS       XP_009555491             335 aa            linear   VRT 09-MAR-2023
DEFINITION  pituitary-specific positive transcription factor 1 isoform X2
            [Cuculus canorus].
ACCESSION   XP_009555491
VERSION     XP_009555491.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557196.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..335
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..335
                     /product="pituitary-specific positive transcription factor
                     1 isoform X2"
                     /calculated_mol_wt=37349
     Region          167..241
                     /region_name="POU"
                     /note="Found in Pit-Oct-Unc transcription factors;
                     smart00352"
                     /db_xref="CDD:197673"
     Region          258..314
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     CDS             1..335
                     /gene="POU1F1"
                     /coded_by="XM_009557196.2:1..1008"
                     /db_xref="GeneID:104055994"
ORIGIN      
        1 mtcqafassd tfvplnsdss pslplimhhs aaeclavsnh atnvvstglh ysvpscpygn
       61 qpstygvmag ikpatpemls aslsqsrilq tcsmphpnvv nsvstlqssl tpclykfpeh
      121 alsasscalg hgftpmhqsl ltddptatdf kqefrrksks ieepvdmdsp eirelekfan
      181 efklrriklg ytqtnvgeal aavhgsefsq tticrfenlq lsfknacklk silskwleea
      241 eqvgalynek vgvnerkrkr rttisiaake alerhfgeqs kpssqeimrm aeglnlekev
      301 vrvwfcnrrq rekrvktslh qntfssiike hhecr
//
LOCUS       XP_009555492             325 aa            linear   VRT 09-MAR-2023
DEFINITION  pituitary-specific positive transcription factor 1 isoform X3
            [Cuculus canorus].
ACCESSION   XP_009555492
VERSION     XP_009555492.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557197.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..325
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..325
                     /product="pituitary-specific positive transcription factor
                     1 isoform X3"
                     /calculated_mol_wt=36079
     Region          157..231
                     /region_name="POU"
                     /note="Found in Pit-Oct-Unc transcription factors;
                     smart00352"
                     /db_xref="CDD:197673"
     Region          248..304
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     CDS             1..325
                     /gene="POU1F1"
                     /coded_by="XM_009557197.2:1..978"
                     /db_xref="GeneID:104055994"
ORIGIN      
        1 mtcqafassd tfvplnsdss pslplimhhs aaeclavsnh atnvvstvps vlslirtpic
       61 sctrgavatl gnalaglhys vpscpygnqp stygvmagsl tpclykfpeh alsasscalg
      121 hgftpmhqsl ltddptatdf kqefrrksks ieepvdmdsp eirelekfan efklrriklg
      181 ytqtnvgeal aavhgsefsq tticrfenlq lsfknacklk silskwleea eqvgalynek
      241 vgvnerkrkr rttisiaake alerhfgeqs kpssqeimrm aeglnlekev vrvwfcnrrq
      301 rekrvktslh qntfssiike hhecr
//
LOCUS       XP_009555493             297 aa            linear   VRT 09-MAR-2023
DEFINITION  pituitary-specific positive transcription factor 1 isoform X4
            [Cuculus canorus].
ACCESSION   XP_009555493
VERSION     XP_009555493.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557198.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..297
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..297
                     /product="pituitary-specific positive transcription factor
                     1 isoform X4"
                     /calculated_mol_wt=33313
     Region          129..203
                     /region_name="POU"
                     /note="Found in Pit-Oct-Unc transcription factors;
                     smart00352"
                     /db_xref="CDD:197673"
     Region          220..276
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     CDS             1..297
                     /gene="POU1F1"
                     /coded_by="XM_009557198.2:1..894"
                     /db_xref="GeneID:104055994"
ORIGIN      
        1 mtcqafassd tfvplnsdss pslplimhhs aaeclavsnh atnvvstglh ysvpscpygn
       61 qpstygvmag sltpclykfp ehalsassca lghgftpmhq slltddptat dfkqefrrks
      121 ksieepvdmd speirelekf anefklrrik lgytqtnvge alaavhgsef sqtticrfen
      181 lqlsfknack lksilskwle eaeqvgalyn ekvgvnerkr krrttisiaa kealerhfge
      241 qskpssqeim rmaeglnlek evvrvwfcnr rqrekrvkts lhqntfssii kehhecr
//
LOCUS       XP_009555910             470 aa            linear   VRT 09-MAR-2023
DEFINITION  BPI fold-containing family C protein [Cuculus canorus].
ACCESSION   XP_009555910
VERSION     XP_009555910.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557615.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555910.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..470
                     /product="BPI fold-containing family C protein"
                     /calculated_mol_wt=51721
     Region          23..244
                     /region_name="BPI"
                     /note="BPI/LBP/CETP domain; Bactericidal
                     permeability-increasing protein (BPI) /
                     Lipopolysaccharide-binding protein (LBP) / Cholesteryl
                     ester transfer protein (CETP) domain; binds to and
                     neutralizes lipopolysaccharides from the outer membrane of
                     Gram-negative...; cl00188"
                     /db_xref="CDD:412206"
     Site            23..29
                     /site_type="other"
                     /note="BPI dimerizatation interface [polypeptide binding]"
                     /db_xref="CDD:238164"
     Site            order(28,33,36,40,43,94,135,137,147,194,198,202,235)
                     /site_type="active"
                     /note="apolar binding pocket [active]"
                     /db_xref="CDD:238164"
     Region          235..468
                     /region_name="BPI"
                     /note="BPI/LBP/CETP domain; Bactericidal
                     permeability-increasing protein (BPI) /
                     Lipopolysaccharide-binding protein (LBP) / Cholesteryl
                     ester transfer protein (CETP) domain; binds to and
                     neutralizes lipopolysaccharides from the outer membrane of
                     Gram-negative...; cl00188"
                     /db_xref="CDD:412206"
     Site            268..274
                     /site_type="other"
                     /note="BPI dimerizatation interface [polypeptide binding]"
                     /db_xref="CDD:238164"
     Site            order(273,278,281,285,288,346,379,381,390,426,430,434,460)
                     /site_type="active"
                     /note="apolar binding pocket [active]"
                     /db_xref="CDD:238164"
     CDS             1..470
                     /gene="LOC104056364"
                     /coded_by="XM_009557615.2:118..1530"
                     /db_xref="GeneID:104056364"
ORIGIN      
        1 mvkiccslll lsllsgqlna npglkvritq kgleyakevg leilkqnmek esfpdlsgye
       61 kfglgnvkyn isrihitave fpsasislip gtgiklvign asltidmnwn irtwmfkdsg
      121 rstvyiskvs vtsifstpld ntghtsislt scqttsgdid ikltgksgfl hnffikylkk
      181 pihrtlvtns cpnirsgiql idedlrslnv lmpvddlaev dyslnslpav fqpfidldlk
      241 givypagnyt glpymaaplt ipdpsdsmly lafseyffqt ysfayytaga fnitiaeetc
      301 syfnisteif gsiipevaky svtpypvmlk lmateipiis leqdsftvei qgsmevfavl
      361 pdstsqslft tnitanasia lnifdqklmg slclnrlqfs lahsnvgffe isllenilsy
      421 ilqtevipsa naklskglpl pnlanvtltr phitivqgym listdvhykp
//
LOCUS       XP_009564718             688 aa            linear   VRT 09-MAR-2023
DEFINITION  UV radiation resistance-associated gene protein isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009564718
VERSION     XP_009564718.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566423.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564718.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..688
                     /product="UV radiation resistance-associated gene protein
                     isoform X1"
                     /calculated_mol_wt=77576
     Region          36..>83
                     /region_name="C2"
                     /note="C2 domain; cl14603"
                     /db_xref="CDD:472691"
     Region          172..437
                     /region_name="ATG14"
                     /note="Vacuolar sorting 38 and autophagy-related subunit
                     14; pfam10186"
                     /db_xref="CDD:462986"
     CDS             1..688
                     /gene="UVRAG"
                     /coded_by="XM_009566423.2:111..2177"
                     /db_xref="GeneID:104064127"
ORIGIN      
        1 mssaagpaal apgsatralh velpsqqrrl rhlrniaarn ivnkngyrll dtyftlhlcd
       61 ntkiykefyr seviknslnp twrsldfgim pdrldtsvsc fvvriwggkk ehfqlliewk
      121 vnldglkylg qqiharspne iifglndgyy gasfeqkdhs gtlknsllqv dqncvrnsyd
      181 vfsllrlhra qcaikqtqvt vqkigreiee klrctstsne lkkeseclql kilvlrnele
      241 rqkkalgqev allhkekntl hdkenafhte yqklqehnes lhelrkecta krelflktna
      301 qqtirckqll selsyiypid lndqkdyfvc gvklpnsedf qakddgsiav algytahlvs
      361 misyflqvpl rypiihkgsr stikdnindk ltekerefpl ypkggeklqf eygvyllnkn
      421 iaqlryqhgl stpdlrqtlp nlrnfmevgl mvrcdrhhts saipvpkrqs ssvgrldigf
      481 stglpspdkg lrkrastgne rlqhktppps ynsaltqpva itacvgeldk kpgsisssld
      541 tsmdsskgnt kksedlctnl ngengrslnn tqdrqesfpg htsaingvfl pgecsgtasn
      601 eqpcelrpsl gpvlcctveq aeeimgmeat gfstgdqled fnsipvehav avecdeqvlg
      661 efeefsrriy alnenmssfr rprkssdk
//
LOCUS       XP_053941884             438 aa            linear   VRT 09-MAR-2023
DEFINITION  UV radiation resistance-associated gene protein isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053941884
VERSION     XP_053941884.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085909.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..438
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..438
                     /product="UV radiation resistance-associated gene protein
                     isoform X2"
                     /calculated_mol_wt=50246
     Region          36..>83
                     /region_name="C2"
                     /note="C2 domain; cl14603"
                     /db_xref="CDD:472691"
     Region          172..>383
                     /region_name="ATG14"
                     /note="Vacuolar sorting 38 and autophagy-related subunit
                     14; pfam10186"
                     /db_xref="CDD:462986"
     CDS             1..438
                     /gene="UVRAG"
                     /coded_by="XM_054085909.1:111..1427"
                     /db_xref="GeneID:104064127"
ORIGIN      
        1 mssaagpaal apgsatralh velpsqqrrl rhlrniaarn ivnkngyrll dtyftlhlcd
       61 ntkiykefyr seviknslnp twrsldfgim pdrldtsvsc fvvriwggkk ehfqlliewk
      121 vnldglkylg qqiharspne iifglndgyy gasfeqkdhs gtlknsllqv dqncvrnsyd
      181 vfsllrlhra qcaikqtqvt vqkigreiee klrctstsne lkkeseclql kilvlrnele
      241 rqkkalgqev allhkekntl hdkenafhte yqklqehnes lhelrkecta krelflktna
      301 qqtirckqll selsyiypid lndqkdyfvc gvklpnsedf qakddgsiav algytahlvs
      361 misyflqvpl rypiihkgsr stikdnindk ltekerefpl ypkggeklqf eygvyllnkn
      421 iaqistwaey sgskanss
//
LOCUS       XP_009566700             379 aa            linear   VRT 09-MAR-2023
DEFINITION  arf-GAP with dual PH domain-containing protein 1 isoform X1
            [Cuculus canorus].
ACCESSION   XP_009566700
VERSION     XP_009566700.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568405.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566700.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..379
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..379
                     /product="arf-GAP with dual PH domain-containing protein 1
                     isoform X1"
                     /calculated_mol_wt=43849
     Region          6..117
                     /region_name="ArfGap_ADAP"
                     /note="ArfGap with dual PH domains; cd08832"
                     /db_xref="CDD:350061"
     Site            order(25,28,45,48,53)
                     /site_type="other"
                     /note="arginine finger"
                     /db_xref="CDD:350061"
     Site            order(25,28,45,48)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:350061"
     Region          134..242
                     /region_name="PH1_ADAP"
                     /note="ArfGAP with dual PH domains Pleckstrin homology
                     (PH) domain, repeat 1; cd13252"
                     /db_xref="CDD:270072"
     Site            order(141,147,149..151,190..197,215..218,220..221)
                     /site_type="other"
                     /note="heterotetramer interface [polypeptide binding]"
                     /db_xref="CDD:270072"
     Site            order(141,147,149..151,190..197,215,217)
                     /site_type="other"
                     /note="KIF12B binding site [polypeptide binding]"
                     /db_xref="CDD:270072"
     Site            order(142,145..147,153,166,168,176,210)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270072"
     Region          256..362
                     /region_name="PH2_ADAP"
                     /note="ArfGAP with dual PH domains Pleckstrin homology
                     (PH) domain, repeat 2; cd01251"
                     /db_xref="CDD:241282"
     Site            order(265,273,275,277,288,298,337)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:241282"
     CDS             1..379
                     /gene="LOC104065873"
                     /coded_by="XM_009568405.2:905..2044"
                     /db_xref="GeneID:104065873"
ORIGIN      
        1 mmaggnersi kalrevwrrv enslcadcgk pdpdwasstl gvficlscsg ihrnipsisk
       61 vkslkmdhwd daqvqflakh gnavtkatye ahipiyyyqp tyhdcqvlre qwirakyerk
      121 eftepgkhlp yadgvkegil wkrgrdngqf lprkfllser egclkyftkq dakepkinik
      181 idvinatfqp vkignpnglq itylkdnktr nifvyhesgk evvdwfnair svqfhylkva
      241 fpiasdneik nrltrnflke gymektgpkq reafkkrwft ldhrrlmyfk dpldafakge
      301 vfvgsrengy svqkglpsgt qgnfswhygi tivtpdreyl ftcetesdql dwiaaftsvi
      361 nqamtpqeya ieayfkfks
//
LOCUS       XP_053941900             379 aa            linear   VRT 09-MAR-2023
DEFINITION  arf-GAP with dual PH domain-containing protein 1 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053941900
VERSION     XP_053941900.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085925.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..379
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..379
                     /product="arf-GAP with dual PH domain-containing protein 1
                     isoform X1"
                     /calculated_mol_wt=43849
     Region          6..117
                     /region_name="ArfGap_ADAP"
                     /note="ArfGap with dual PH domains; cd08832"
                     /db_xref="CDD:350061"
     Site            order(25,28,45,48,53)
                     /site_type="other"
                     /note="arginine finger"
                     /db_xref="CDD:350061"
     Site            order(25,28,45,48)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:350061"
     Region          134..242
                     /region_name="PH1_ADAP"
                     /note="ArfGAP with dual PH domains Pleckstrin homology
                     (PH) domain, repeat 1; cd13252"
                     /db_xref="CDD:270072"
     Site            order(141,147,149..151,190..197,215..218,220..221)
                     /site_type="other"
                     /note="heterotetramer interface [polypeptide binding]"
                     /db_xref="CDD:270072"
     Site            order(141,147,149..151,190..197,215,217)
                     /site_type="other"
                     /note="KIF12B binding site [polypeptide binding]"
                     /db_xref="CDD:270072"
     Site            order(142,145..147,153,166,168,176,210)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270072"
     Region          256..362
                     /region_name="PH2_ADAP"
                     /note="ArfGAP with dual PH domains Pleckstrin homology
                     (PH) domain, repeat 2; cd01251"
                     /db_xref="CDD:241282"
     Site            order(265,273,275,277,288,298,337)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:241282"
     CDS             1..379
                     /gene="LOC104065873"
                     /coded_by="XM_054085925.1:212..1351"
                     /db_xref="GeneID:104065873"
ORIGIN      
        1 mmaggnersi kalrevwrrv enslcadcgk pdpdwasstl gvficlscsg ihrnipsisk
       61 vkslkmdhwd daqvqflakh gnavtkatye ahipiyyyqp tyhdcqvlre qwirakyerk
      121 eftepgkhlp yadgvkegil wkrgrdngqf lprkfllser egclkyftkq dakepkinik
      181 idvinatfqp vkignpnglq itylkdnktr nifvyhesgk evvdwfnair svqfhylkva
      241 fpiasdneik nrltrnflke gymektgpkq reafkkrwft ldhrrlmyfk dpldafakge
      301 vfvgsrengy svqkglpsgt qgnfswhygi tivtpdreyl ftcetesdql dwiaaftsvi
      361 nqamtpqeya ieayfkfks
//
LOCUS       XP_053941909             338 aa            linear   VRT 09-MAR-2023
DEFINITION  arf-GAP with dual PH domain-containing protein 1 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053941909
VERSION     XP_053941909.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085934.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..338
                     /product="arf-GAP with dual PH domain-containing protein 1
                     isoform X2"
                     /calculated_mol_wt=38819
     Region          6..117
                     /region_name="ArfGap_ADAP"
                     /note="ArfGap with dual PH domains; cd08832"
                     /db_xref="CDD:350061"
     Site            order(25,28,45,48,53)
                     /site_type="other"
                     /note="arginine finger"
                     /db_xref="CDD:350061"
     Site            order(25,28,45,48)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:350061"
     Region          134..242
                     /region_name="PH1_ADAP"
                     /note="ArfGAP with dual PH domains Pleckstrin homology
                     (PH) domain, repeat 1; cd13252"
                     /db_xref="CDD:270072"
     Site            order(141,147,149..151,190..197,215..218,220..221)
                     /site_type="other"
                     /note="heterotetramer interface [polypeptide binding]"
                     /db_xref="CDD:270072"
     Site            order(141,147,149..151,190..197,215,217)
                     /site_type="other"
                     /note="KIF12B binding site [polypeptide binding]"
                     /db_xref="CDD:270072"
     Site            order(142,145..147,153,166,168,176,210)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270072"
     Region          256..>293
                     /region_name="PH-like"
                     /note="Pleckstrin homology-like domain; cl17171"
                     /db_xref="CDD:473070"
     CDS             1..338
                     /gene="LOC104065873"
                     /coded_by="XM_054085934.1:905..1921"
                     /db_xref="GeneID:104065873"
ORIGIN      
        1 mmaggnersi kalrevwrrv enslcadcgk pdpdwasstl gvficlscsg ihrnipsisk
       61 vkslkmdhwd daqvqflakh gnavtkatye ahipiyyyqp tyhdcqvlre qwirakyerk
      121 eftepgkhlp yadgvkegil wkrgrdngqf lprkfllser egclkyftkq dakepkinik
      181 idvinatfqp vkignpnglq itylkdnktr nifvyhesgk evvdwfnair svqfhylkva
      241 fpiasdneik nrltrnflke gymektgpkq reafkkrwft ldhrrlmyfk dplghratsl
      301 gtmaspssrl tgntsspvrq sltswtglqp slvsstrp
//
LOCUS       XP_009566701             216 aa            linear   VRT 09-MAR-2023
DEFINITION  nucleolar protein 12 [Cuculus canorus].
ACCESSION   XP_009566701
VERSION     XP_009566701.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568406.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566701.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..216
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..216
                     /product="nucleolar protein 12"
                     /calculated_mol_wt=24756
     Region          19..>83
                     /region_name="Nop25"
                     /note="Nucleolar protein 12 (25kDa); pfam09805"
                     /db_xref="CDD:430839"
     CDS             1..216
                     /gene="NOL12"
                     /coded_by="XM_009568406.2:77..727"
                     /db_xref="GeneID:104065874"
ORIGIN      
        1 mgrkkkkqgs gerqgrlvvn fdeerrreyl tgfhkrkver rkaaldeikr klkeeqrkmk
       61 eerhqeylkm lsereaalee adelehlvts qtesvnidhp nhivtvttis dldfsgarql
      121 glttsvgksd aseeekgeea vekpvrampk ksrnpflsek issltatlhm hsrkktkgkk
      181 sqrgqgphkk iqksstgrtt ktqrrrltgk mgrdqd
//
LOCUS       XP_053941932             165 aa            linear   VRT 09-MAR-2023
DEFINITION  pleiotrophin [Cuculus canorus].
ACCESSION   XP_053941932
VERSION     XP_053941932.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085957.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..165
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..165
                     /product="pleiotrophin"
                     /calculated_mol_wt=18385
     Region          45..129
                     /region_name="PTN_MK_N"
                     /note="PTN/MK heparin-binding protein family, N-terminal
                     domain; cl02505"
                     /db_xref="CDD:470593"
     CDS             1..165
                     /gene="PTN"
                     /coded_by="XM_054085957.1:405..902"
                     /db_xref="GeneID:104058950"
ORIGIN      
        1 mqqqqqqrrm ftaallalvf ilaavsttea gkkekpekka kksdcgewqw svcvptsgdc
       61 glgtregtrt gaeckqttkt qkckipcnwk kqfgaeckyq fqawgecdln talktrtgnl
      121 kralhnadcq ktvtiskpcg kltkpkpqes kkkkkegkkq ekmld
//
LOCUS       XP_053941939             165 aa            linear   VRT 09-MAR-2023
DEFINITION  pleiotrophin [Cuculus canorus].
ACCESSION   XP_053941939
VERSION     XP_053941939.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054085964.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..165
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..165
                     /product="pleiotrophin"
                     /calculated_mol_wt=18385
     Region          45..129
                     /region_name="PTN_MK_N"
                     /note="PTN/MK heparin-binding protein family, N-terminal
                     domain; cl02505"
                     /db_xref="CDD:470593"
     CDS             1..165
                     /gene="PTN"
                     /coded_by="XM_054085964.1:569..1066"
                     /db_xref="GeneID:104058950"
ORIGIN      
        1 mqqqqqqrrm ftaallalvf ilaavsttea gkkekpekka kksdcgewqw svcvptsgdc
       61 glgtregtrt gaeckqttkt qkckipcnwk kqfgaeckyq fqawgecdln talktrtgnl
      121 kralhnadcq ktvtiskpcg kltkpkpqes kkkkkegkkq ekmld
//
LOCUS       XP_009563867             324 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat and SOCS box protein 11 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009563867
VERSION     XP_009563867.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565572.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009563867.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..324
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..324
                     /product="ankyrin repeat and SOCS box protein 11 isoform
                     X1"
                     /calculated_mol_wt=35438
     Region          14..283
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(67,71..72,75..77,79..80,84,87,96,98,100,104..105,
                     108..110,112..113,117,120,129,131,133,137..138,141..143,
                     145..146,150,153,162)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          67..96
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          98..129
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          131..162
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          166..194
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(169..170,173..175,177..178,182,185,194,196,198,
                     202..203,206..208,210..211,215,218,226,228,230,234..235,
                     238..240,242..243,247,250,259)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          196..226
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          228..259
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          283..324
                     /region_name="SOCS"
                     /note="SOCS (suppressors of cytokine signaling) box. The
                     SOCS box is found in the C-terminal region of CIS/SOCS
                     family proteins (in combination with a SH2 domain), ASBs
                     (ankyrin repeat-containing proteins with a SOCS box), SSBs
                     (SPRY domain-containing proteins...; cl02533"
                     /db_xref="CDD:470605"
     Site            order(284..289,295,305,311)
                     /site_type="active"
                     /note="elongin B/C interaction [active]"
                     /db_xref="CDD:239641"
     CDS             1..324
                     /gene="ASB11"
                     /coded_by="XM_009565572.2:16..990"
                     /db_xref="GeneID:104063403"
ORIGIN      
        1 mkmegssilh aftniyfaif alfcfkllik islallthfy ivkgnrkeaa riaeeiygiv
       61 pgswadrspl hdaafqgrll slktliaqgf nvnlvtmdrv talheaclgg hvacakvlle
      121 sgaqvnavti dgitplfnac csgsvacvnm llefgakpqp rnhlaspihe avkrghrecm
      181 eillaheadi dqedpqhgtp lyvactyqrt dcvrkllelg anvnagkrld tplhaaarks
      241 svdvvvllad yganlkcrna elkcaldlai pnskveqall lregpaslaq lcrlcirkhl
      301 grsclyavhk lhlpeplenf llyr
//
LOCUS       XP_009563870             286 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat and SOCS box protein 11 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_009563870
VERSION     XP_009563870.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565575.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009563870.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..286
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..286
                     /product="ankyrin repeat and SOCS box protein 11 isoform
                     X2"
                     /calculated_mol_wt=31017
     Region          27..245
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(29,33..34,37..39,41..42,46,49,58,60,62,66..67,
                     70..72,74..75,79,82,91,93,95,99..100,103..105,107..108,
                     112,115,124)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          29..58
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          60..91
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          93..124
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          128..156
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(131..132,135..137,139..140,144,147,156,158,160,
                     164..165,168..170,172..173,177,180,188,190,192,196..197,
                     200..202,204..205,209,212,221)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          158..188
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          190..221
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          245..286
                     /region_name="SOCS"
                     /note="SOCS (suppressors of cytokine signaling) box. The
                     SOCS box is found in the C-terminal region of CIS/SOCS
                     family proteins (in combination with a SH2 domain), ASBs
                     (ankyrin repeat-containing proteins with a SOCS box), SSBs
                     (SPRY domain-containing proteins...; cl02533"
                     /db_xref="CDD:470605"
     Site            order(246..251,257,267,273)
                     /site_type="active"
                     /note="elongin B/C interaction [active]"
                     /db_xref="CDD:239641"
     CDS             1..286
                     /gene="ASB11"
                     /coded_by="XM_009565575.2:65..925"
                     /db_xref="GeneID:104063403"
ORIGIN      
        1 mslttvkgrc vpygnyicha fqggswadrs plhdaafqgr llslktliaq gfnvnlvtmd
       61 rvtalheacl gghvacakvl lesgaqvnav tidgitplfn accsgsvacv nmllefgakp
      121 qprnhlaspi heavkrghre cmeillahea didqedpqhg tplyvactyq rtdcvrklle
      181 lganvnagkr ldtplhaaar kssvdvvvll adyganlkcr naelkcaldl aipnskveqa
      241 lllregpasl aqlcrlcirk hlgrsclyav hklhlpeple nfllyr
//
LOCUS       XP_053941980             294 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat and SOCS box protein 9 isoform X1 [Cuculus canorus].
ACCESSION   XP_053941980
VERSION     XP_053941980.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086005.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..294
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..294
                     /product="ankyrin repeat and SOCS box protein 9 isoform
                     X1"
                     /calculated_mol_wt=31574
     Site            order(35,37,41..42,45..47,49..50,54,57,66,68,70,74..75,
                     78..80,82..83,87,90,99,101,103,107..108,111..113,115..116,
                     120,123)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          35..66
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          39..238
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          68..99
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          101..129
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          136..164
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(139..140,143..145,147..148,152,155,164,166,168,
                     172..173,176..178,180..181,185,188,196,198,200,204..205,
                     208..210,212..213,217,220,229)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          166..196
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          198..229
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          253..293
                     /region_name="SOCS"
                     /note="SOCS (suppressors of cytokine signaling) box. The
                     SOCS box is found in the C-terminal region of CIS/SOCS
                     family proteins (in combination with a SH2 domain), ASBs
                     (ankyrin repeat-containing proteins with a SOCS box), SSBs
                     (SPRY domain-containing proteins...; cl02533"
                     /db_xref="CDD:470605"
     Site            order(254..259,265,275,281)
                     /site_type="active"
                     /note="elongin B/C interaction [active]"
                     /db_xref="CDD:239641"
     CDS             1..294
                     /gene="ASB9"
                     /coded_by="XM_054086005.1:248..1132"
                     /db_xref="GeneID:104063404"
ORIGIN      
        1 mddegtnqna sklqeargqa samslpnslm rdfvsdcspl hdasihgrll tlkklikqgs
       61 dvnlvtadqv splheaclgg haacasvllk hgaqvngvtv dwhtplfsac vsgsmdclnl
      121 llqhganlhp pcdlaspihe aakrghvqcv eflasngvni dhnikhlgtp lyvacenqqv
      181 scakkllesg anvnsgkgld splhvasrnc svelvtllid fgadiwvkna egkrpmelvp
      241 psspvgllfl qkegplslmq lcrlcirrcf ghkqhqkitg lllpdelkhf llhv
//
LOCUS       XP_053941989             249 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat and SOCS box protein 9 isoform X2 [Cuculus canorus].
ACCESSION   XP_053941989
VERSION     XP_053941989.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086014.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..249
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..249
                     /product="ankyrin repeat and SOCS box protein 9 isoform
                     X2"
                     /calculated_mol_wt=26683
     Site            order(35,37,41..42,45..47,49..50,54,57,66,68,70,74..75,
                     78..80,82..83,87,90,99,101,103,107..108,111..113,115..116,
                     120,123)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          35..66
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          <38..>193
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          68..99
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          101..129
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          144..184
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          208..248
                     /region_name="SOCS"
                     /note="SOCS (suppressors of cytokine signaling) box. The
                     SOCS box is found in the C-terminal region of CIS/SOCS
                     family proteins (in combination with a SH2 domain), ASBs
                     (ankyrin repeat-containing proteins with a SOCS box), SSBs
                     (SPRY domain-containing proteins...; cl02533"
                     /db_xref="CDD:470605"
     Site            order(209..214,220,230,236)
                     /site_type="active"
                     /note="elongin B/C interaction [active]"
                     /db_xref="CDD:239641"
     CDS             1..249
                     /gene="ASB9"
                     /coded_by="XM_054086014.1:249..998"
                     /db_xref="GeneID:104063404"
ORIGIN      
        1 mddegtnqna sklqeargqa samslpnslm rdfvsdcspl hdasihgrll tlkklikqgs
       61 dvnlvtadqv splheaclgg haacasvllk hgaqvngvtv dwhtplfsac vsgsmdclnl
      121 llqhganlhp pcdlaspihe aakrganvns gkgldsplhv asrncsvelv tllidfgadi
      181 wvknaegkrp melvppsspv gllflqkegp lslmqlcrlc irrcfghkqh qkitglllpd
      241 elkhfllhv
//
LOCUS       XP_009559204             349 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-1,3-galactosyltransferase 5 [Cuculus canorus].
ACCESSION   XP_009559204
VERSION     XP_009559204.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560909.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..349
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..349
                     /product="beta-1,3-galactosyltransferase 5"
                     /calculated_mol_wt=40569
     Region          113..302
                     /region_name="Galactosyl_T"
                     /note="Galactosyltransferase; cl21608"
                     /db_xref="CDD:473923"
     CDS             1..349
                     /gene="B3GALT5"
                     /coded_by="XM_009560909.2:452..1501"
                     /db_xref="GeneID:104059262"
ORIGIN      
        1 mktggtcqgl pavqhllalg hrhlsntwrn mvdfrkfrlf vclvglscas fwvfynnvtk
       61 scifcensqd yislpetfrr fegnflqlpd idchenppfl vllvassyhd iharmairqs
      121 wgkertvagk rlvtyfllgt tvnlsqqadi aaesqkykdv iqknftdtyy nltlktmmgi
      181 ewihrfcyqs sfvmktdtdv fvnvfyltel llrkkrttrf ftgflklhey pirirkskwy
      241 vsreeypgkt yppfcsgtgy vlstdvasqi ynvsesisfi kledvfiglc laklkiqlee
      301 lhseqtffpe kisfsvsrfk kivmchevep sqqlsywnnl vtdnygevl
//
LOCUS       XP_053942012             349 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-1,3-galactosyltransferase 5 [Cuculus canorus].
ACCESSION   XP_053942012
VERSION     XP_053942012.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086037.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..349
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..349
                     /product="beta-1,3-galactosyltransferase 5"
                     /calculated_mol_wt=40569
     Region          113..302
                     /region_name="Galactosyl_T"
                     /note="Galactosyltransferase; cl21608"
                     /db_xref="CDD:473923"
     CDS             1..349
                     /gene="B3GALT5"
                     /coded_by="XM_054086037.1:2306..3355"
                     /db_xref="GeneID:104059262"
ORIGIN      
        1 mktggtcqgl pavqhllalg hrhlsntwrn mvdfrkfrlf vclvglscas fwvfynnvtk
       61 scifcensqd yislpetfrr fegnflqlpd idchenppfl vllvassyhd iharmairqs
      121 wgkertvagk rlvtyfllgt tvnlsqqadi aaesqkykdv iqknftdtyy nltlktmmgi
      181 ewihrfcyqs sfvmktdtdv fvnvfyltel llrkkrttrf ftgflklhey pirirkskwy
      241 vsreeypgkt yppfcsgtgy vlstdvasqi ynvsesisfi kledvfiglc laklkiqlee
      301 lhseqtffpe kisfsvsrfk kivmchevep sqqlsywnnl vtdnygevl
//
LOCUS       XP_053942021             349 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-1,3-galactosyltransferase 5 [Cuculus canorus].
ACCESSION   XP_053942021
VERSION     XP_053942021.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086046.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..349
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..349
                     /product="beta-1,3-galactosyltransferase 5"
                     /calculated_mol_wt=40569
     Region          113..302
                     /region_name="Galactosyl_T"
                     /note="Galactosyltransferase; cl21608"
                     /db_xref="CDD:473923"
     CDS             1..349
                     /gene="B3GALT5"
                     /coded_by="XM_054086046.1:279..1328"
                     /db_xref="GeneID:104059262"
ORIGIN      
        1 mktggtcqgl pavqhllalg hrhlsntwrn mvdfrkfrlf vclvglscas fwvfynnvtk
       61 scifcensqd yislpetfrr fegnflqlpd idchenppfl vllvassyhd iharmairqs
      121 wgkertvagk rlvtyfllgt tvnlsqqadi aaesqkykdv iqknftdtyy nltlktmmgi
      181 ewihrfcyqs sfvmktdtdv fvnvfyltel llrkkrttrf ftgflklhey pirirkskwy
      241 vsreeypgkt yppfcsgtgy vlstdvasqi ynvsesisfi kledvfiglc laklkiqlee
      301 lhseqtffpe kisfsvsrfk kivmchevep sqqlsywnnl vtdnygevl
//
LOCUS       XP_053942030             349 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-1,3-galactosyltransferase 5 [Cuculus canorus].
ACCESSION   XP_053942030
VERSION     XP_053942030.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086055.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..349
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..349
                     /product="beta-1,3-galactosyltransferase 5"
                     /calculated_mol_wt=40569
     Region          113..302
                     /region_name="Galactosyl_T"
                     /note="Galactosyltransferase; cl21608"
                     /db_xref="CDD:473923"
     CDS             1..349
                     /gene="B3GALT5"
                     /coded_by="XM_054086055.1:273..1322"
                     /db_xref="GeneID:104059262"
ORIGIN      
        1 mktggtcqgl pavqhllalg hrhlsntwrn mvdfrkfrlf vclvglscas fwvfynnvtk
       61 scifcensqd yislpetfrr fegnflqlpd idchenppfl vllvassyhd iharmairqs
      121 wgkertvagk rlvtyfllgt tvnlsqqadi aaesqkykdv iqknftdtyy nltlktmmgi
      181 ewihrfcyqs sfvmktdtdv fvnvfyltel llrkkrttrf ftgflklhey pirirkskwy
      241 vsreeypgkt yppfcsgtgy vlstdvasqi ynvsesisfi kledvfiglc laklkiqlee
      301 lhseqtffpe kisfsvsrfk kivmchevep sqqlsywnnl vtdnygevl
//
LOCUS       XP_053942034             349 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-1,3-galactosyltransferase 5 [Cuculus canorus].
ACCESSION   XP_053942034
VERSION     XP_053942034.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086059.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..349
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..349
                     /product="beta-1,3-galactosyltransferase 5"
                     /calculated_mol_wt=40569
     Region          113..302
                     /region_name="Galactosyl_T"
                     /note="Galactosyltransferase; cl21608"
                     /db_xref="CDD:473923"
     CDS             1..349
                     /gene="B3GALT5"
                     /coded_by="XM_054086059.1:270..1319"
                     /db_xref="GeneID:104059262"
ORIGIN      
        1 mktggtcqgl pavqhllalg hrhlsntwrn mvdfrkfrlf vclvglscas fwvfynnvtk
       61 scifcensqd yislpetfrr fegnflqlpd idchenppfl vllvassyhd iharmairqs
      121 wgkertvagk rlvtyfllgt tvnlsqqadi aaesqkykdv iqknftdtyy nltlktmmgi
      181 ewihrfcyqs sfvmktdtdv fvnvfyltel llrkkrttrf ftgflklhey pirirkskwy
      241 vsreeypgkt yppfcsgtgy vlstdvasqi ynvsesisfi kledvfiglc laklkiqlee
      301 lhseqtffpe kisfsvsrfk kivmchevep sqqlsywnnl vtdnygevl
//
LOCUS       XP_053942044             349 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-1,3-galactosyltransferase 5 [Cuculus canorus].
ACCESSION   XP_053942044
VERSION     XP_053942044.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086069.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..349
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..349
                     /product="beta-1,3-galactosyltransferase 5"
                     /calculated_mol_wt=40569
     Region          113..302
                     /region_name="Galactosyl_T"
                     /note="Galactosyltransferase; cl21608"
                     /db_xref="CDD:473923"
     CDS             1..349
                     /gene="B3GALT5"
                     /coded_by="XM_054086069.1:455..1504"
                     /db_xref="GeneID:104059262"
ORIGIN      
        1 mktggtcqgl pavqhllalg hrhlsntwrn mvdfrkfrlf vclvglscas fwvfynnvtk
       61 scifcensqd yislpetfrr fegnflqlpd idchenppfl vllvassyhd iharmairqs
      121 wgkertvagk rlvtyfllgt tvnlsqqadi aaesqkykdv iqknftdtyy nltlktmmgi
      181 ewihrfcyqs sfvmktdtdv fvnvfyltel llrkkrttrf ftgflklhey pirirkskwy
      241 vsreeypgkt yppfcsgtgy vlstdvasqi ynvsesisfi kledvfiglc laklkiqlee
      301 lhseqtffpe kisfsvsrfk kivmchevep sqqlsywnnl vtdnygevl
//
LOCUS       XP_053942055             176 aa            linear   VRT 09-MAR-2023
DEFINITION  SH3 domain-binding glutamic acid-rich protein isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053942055
VERSION     XP_053942055.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086080.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..176
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..176
                     /product="SH3 domain-binding glutamic acid-rich protein
                     isoform X1"
                     /calculated_mol_wt=19795
     Region          2..97
                     /region_name="GRX_SH3BGR"
                     /note="Glutaredoxin (GRX) family, SH3BGR (SH3 domain
                     binding glutamic acid-rich protein) subfamily; a
                     recently-identified subfamily composed of SH3BGR and
                     similar proteins possessing significant sequence
                     similarity to GRX, but without a redox active CXXC motif;
                     cd03030"
                     /db_xref="CDD:239328"
     CDS             1..176
                     /gene="SH3BGR"
                     /coded_by="XM_054086080.1:203..733"
                     /db_xref="GeneID:104059261"
ORIGIN      
        1 mvikvfvats sgstaikkkq qevvgflean kidfqqmdia gdednrkwmr envpgekkpq
       61 ngiplppqif neerycgdfe sffsakeeni iysflglapp pgtketeksd ateeteakse
      121 dktdegahee vqstqspses qqeskeehea tgeeeeekek qeegeekeev eeqees
//
LOCUS       XP_053942063             174 aa            linear   VRT 09-MAR-2023
DEFINITION  SH3 domain-binding glutamic acid-rich protein isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053942063
VERSION     XP_053942063.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086088.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..174
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..174
                     /product="SH3 domain-binding glutamic acid-rich protein
                     isoform X2"
                     /calculated_mol_wt=19409
     Region          2..97
                     /region_name="GRX_SH3BGR"
                     /note="Glutaredoxin (GRX) family, SH3BGR (SH3 domain
                     binding glutamic acid-rich protein) subfamily; a
                     recently-identified subfamily composed of SH3BGR and
                     similar proteins possessing significant sequence
                     similarity to GRX, but without a redox active CXXC motif;
                     cd03030"
                     /db_xref="CDD:239328"
     CDS             1..174
                     /gene="SH3BGR"
                     /coded_by="XM_054086088.1:208..732"
                     /db_xref="GeneID:104059261"
ORIGIN      
        1 mvikvfvats sgstaikkkq qevvgflean kidfqqmdia gdednrkwmr envpgekkpq
       61 ngiplppqif neerycgdfe sffsakeeni iysflglapp pgtketeksd ateeteakse
      121 dktdegahee vqstqspses qqeskeehea tglihvlcss lpkkrvvifq hfcl
//
LOCUS       XP_053942073             149 aa            linear   VRT 09-MAR-2023
DEFINITION  SH3 domain-binding glutamic acid-rich protein isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053942073
VERSION     XP_053942073.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086098.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..149
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..149
                     /product="SH3 domain-binding glutamic acid-rich protein
                     isoform X3"
                     /calculated_mol_wt=16808
     Region          2..94
                     /region_name="GRX_SH3BGR"
                     /note="Glutaredoxin (GRX) family, SH3BGR (SH3 domain
                     binding glutamic acid-rich protein) subfamily; a
                     recently-identified subfamily composed of SH3BGR and
                     similar proteins possessing significant sequence
                     similarity to GRX, but without a redox active CXXC motif;
                     cd03030"
                     /db_xref="CDD:239328"
     CDS             1..149
                     /gene="SH3BGR"
                     /coded_by="XM_054086098.1:209..658"
                     /db_xref="GeneID:104059261"
ORIGIN      
        1 mvikvfvats sgstaikkkq qevvgflean kidfqqmdia gdednrkwmr envpgekkpq
       61 ngiplppqif neerycgete ksdateetea ksedktdega heevqstqsp sesqqeskee
      121 heatgeeeee kekqeegeek eeveeqees
//
LOCUS       XP_053942084             170 aa            linear   VRT 09-MAR-2023
DEFINITION  guided entry of tail-anchored proteins factor 1 [Cuculus canorus].
ACCESSION   XP_053942084
VERSION     XP_053942084.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086109.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..170
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..170
                     /product="guided entry of tail-anchored proteins factor 1"
                     /calculated_mol_wt=19193
     Region          13..159
                     /region_name="CHD5"
                     /note="CHD5-like protein; pfam04420"
                     /db_xref="CDD:427938"
     CDS             1..170
                     /gene="GET1"
                     /coded_by="XM_054086109.1:70..582"
                     /db_xref="GeneID:104059231"
ORIGIN      
        1 maesgawllv lssvflcnal killpscssi isrflqkdae qefqmraeiq kmkqelatis
       61 mmdefaryar lerkinkmtd klkthvkart aqlakikwvi nivfyilqaa lmicliwkyy
      121 sepvtvlpsk wlaplerlva fptgvagavg itcwlvvcnk vvaimlhpfs
//
LOCUS       XP_053942093             102 aa            linear   VRT 09-MAR-2023
DEFINITION  non-histone chromosomal protein HMG-14 [Cuculus canorus].
ACCESSION   XP_053942093
VERSION     XP_053942093.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086118.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..102
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..102
                     /product="non-histone chromosomal protein HMG-14"
                     /calculated_mol_wt=11009
     Region          2..97
                     /region_name="HMG14_17"
                     /note="HMG14 and HMG17; pfam01101"
                     /db_xref="CDD:460064"
     CDS             1..102
                     /gene="HMGN1"
                     /coded_by="XM_054086118.1:144..452"
                     /db_xref="GeneID:104059259"
ORIGIN      
        1 mpkrkvtvae gqrpeepkrr sarlsakpap akaepkpkkl pakdksedkk aqskgkrgpk
       61 gkqteetnqe qtkdnlpaen geakseetpa pdaavekeak se
//
LOCUS       XP_009559202             511 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: lebercilin-like protein [Cuculus canorus].
ACCESSION   XP_009559202
VERSION     XP_009559202.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560907.2
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009559202.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..511
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..511
                     /product="LOW QUALITY PROTEIN: lebercilin-like protein"
                     /calculated_mol_wt=58395
     Region          9..201
                     /region_name="Lebercilin"
                     /note="Ciliary protein causing Leber congenital amaurosis
                     disease; pfam15619"
                     /db_xref="CDD:464776"
     CDS             1..511
                     /gene="LCA5L"
                     /coded_by="XM_009560907.2:48..1583"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /db_xref="GeneID:104059260"
ORIGIN      
        1 masqkknais qriasarrnk ikelkneify lqhqleassl enyilkqlqc rhvkaigrye
       61 npksnlldll gshcnevrtl rkllrisqed erstsrklre veaellktkd alqalhmlse
      121 dkvlaereel dhrlsvltek vevnnrriqg lekqlklnnt tfsrqlanen kkaveagiit
      181 ttlkmeitsl hqkikekdrq lcvkniyanr mlktakdksd svphetslsa sisveankqs
      241 frplllsqyq tqetenspiq lteeektsed tnqkakanea yvdaqcrtek qsakktlkpe
      301 tfnrthrqcl regrqlmgey tclefmkeet dllkrelekm veteqtplsk sikennneed
      361 aveereeekp deqlnnseka rskcvtpgpr nktltslkkt ylfseattnl hhelptsgts
      421 pksslckhrr agqdykerae skvknsfgly epsfgkvtkt rqtdrsteae gcahmtfadr
      481 ksspmkelfg qgcaxkgnhs ssnmkgmeke k
//
LOCUS       XP_009559193             133 aa            linear   VRT 09-MAR-2023
DEFINITION  norrin [Cuculus canorus].
ACCESSION   XP_009559193
VERSION     XP_009559193.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560898.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009559193.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..133
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..133
                     /product="norrin"
                     /calculated_mol_wt=14785
     Region          43..129
                     /region_name="CT"
                     /note="C-terminal cystine knot-like domain (CTCK);
                     smart00041"
                     /db_xref="CDD:214482"
     CDS             1..133
                     /gene="NDP"
                     /coded_by="XM_009560898.2:2186..2587"
                     /db_xref="GeneID:104059251"
ORIGIN      
        1 mgnhvlaasi smlsllammg dtdsktdssf midsdpsrcm rhhyvdsish plykcsskmv
       61 llarcegrcs qtsrsepmvs fstvlkqpfr stchccrpqt sklkamrlrc sggmrltaty
      121 ryilschcee cns
//
LOCUS       XP_053942120             133 aa            linear   VRT 09-MAR-2023
DEFINITION  norrin [Cuculus canorus].
ACCESSION   XP_053942120
VERSION     XP_053942120.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086145.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..133
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..133
                     /product="norrin"
                     /calculated_mol_wt=14785
     Region          43..129
                     /region_name="CT"
                     /note="C-terminal cystine knot-like domain (CTCK);
                     smart00041"
                     /db_xref="CDD:214482"
     CDS             1..133
                     /gene="NDP"
                     /coded_by="XM_054086145.1:741..1142"
                     /db_xref="GeneID:104059251"
ORIGIN      
        1 mgnhvlaasi smlsllammg dtdsktdssf midsdpsrcm rhhyvdsish plykcsskmv
       61 llarcegrcs qtsrsepmvs fstvlkqpfr stchccrpqt sklkamrlrc sggmrltaty
      121 ryilschcee cns
//
LOCUS       XP_053942126             133 aa            linear   VRT 09-MAR-2023
DEFINITION  norrin [Cuculus canorus].
ACCESSION   XP_053942126
VERSION     XP_053942126.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086151.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..133
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..133
                     /product="norrin"
                     /calculated_mol_wt=14785
     Region          43..129
                     /region_name="CT"
                     /note="C-terminal cystine knot-like domain (CTCK);
                     smart00041"
                     /db_xref="CDD:214482"
     CDS             1..133
                     /gene="NDP"
                     /coded_by="XM_054086151.1:2283..2684"
                     /db_xref="GeneID:104059251"
ORIGIN      
        1 mgnhvlaasi smlsllammg dtdsktdssf midsdpsrcm rhhyvdsish plykcsskmv
       61 llarcegrcs qtsrsepmvs fstvlkqpfr stchccrpqt sklkamrlrc sggmrltaty
      121 ryilschcee cns
//
LOCUS       XP_053942139             753 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase TBK1 [Cuculus canorus].
ACCESSION   XP_053942139
VERSION     XP_053942139.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086164.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..753
                     /product="serine/threonine-protein kinase TBK1"
                     /calculated_mol_wt=86660
     Region          15..330
                     /region_name="STKc_TBK1"
                     /note="Catalytic domain of the Serine/Threonine kinase,
                     TANK Binding Kinase 1; cd13988"
                     /db_xref="CDD:270890"
     Site            order(15..19,23,36,38,68,86..90,93,95,135,137,139..140,
                     142,156..157,160,175..178)
                     /site_type="active"
                     /db_xref="CDD:270890"
     Site            order(15..19,23,36,38,68,86..90,93,135,137,139..140,142,
                     156..157)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270890"
     Site            order(19,93,95,135,137,139,160,175..178)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270890"
     Site            156..178
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270890"
     Region          308..385
                     /region_name="Ubl_TBK1"
                     /note="ubiquitin-like (Ubl) domain found in TRAF family
                     member-associated NF-kappaB activator (TANK)-binding
                     kinase 1 (TBK1); cd17127"
                     /db_xref="CDD:340647"
     Site            order(316,353,382)
                     /site_type="other"
                     /note="putative hydrophobic patch [polypeptide binding]"
                     /db_xref="CDD:340647"
     Region          400..685
                     /region_name="TBK1_CCD1"
                     /note="TANK-binding kinase 1 coiled-coil domain 1;
                     pfam18394"
                     /db_xref="CDD:465742"
     Region          708..753
                     /region_name="TBK1_C"
                     /note="C-terminal domain of TANK-binding kinase 1;
                     cd21954"
                     /db_xref="CDD:409263"
     Site            order(712..713,715..717,719..720,723..724,726..727,
                     730..731,733..734,737..738,740..741,743..745,747..749)
                     /site_type="other"
                     /note="heterotetramer interface [polypeptide binding]"
                     /db_xref="CDD:409263"
     CDS             1..753
                     /gene="TBK1"
                     /coded_by="XM_054086164.1:103..2364"
                     /db_xref="GeneID:104055187"
ORIGIN      
        1 mqstpnylwl lsdilgqgat anvfrgrhkk tgdlyavkvf nsisflrpvd vqmrefevlk
       61 klnhknivkl faieeetttr hkvlvmefcp cgslytvlee psnafglpes eflivlrdvv
      121 agmnhlreng ivhrdikpgn imrvigedgq svykltdfga areleddeqf vslygteeyl
      181 hpdmyeravl rkehqkkyga tvdlwsigvt fyhaatgslp frpfegprrn kevmykiitg
      241 kpsgaisgiq kaengpiews rempvscsls kglqvlltpv lanileadqe kcwgfdqffa
      301 etsdilhrii ihifslqqmt lhkvyihsyn taaifhdlvy kqtkipsqnq eliyegrrli
      361 lepgrlaqhf prtteenpif vvsreavnvv gliyeevllp kvhqrydlda dasmakavtg
      421 ivcyacrvas slllyqelmr kgirwlieii kddynetvhk ktevvirldf csrnidkaek
      481 iyenlmqinl easevdeise ihtkllrlss sqgtietslq diknklspgg lladtwanqe
      541 gmhpkdrnpe rlqallcsit diyyqfkkdk aerrlpynee qihkfdkqkl ylhatkaial
      601 fkdecvskyd tfldkaedwt rqaidffnsw qcslprfyrr kllkencfsf rkmlhtrkql
      661 laltnqcfdi eeeiskyqdy inelqdtlpq kifaassgmk htmntvypss ntlvemtlgm
      721 kklkeemegv vkelaennhi lerfgdlttd ggl
//
LOCUS       XP_053942147             753 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase TBK1 [Cuculus canorus].
ACCESSION   XP_053942147
VERSION     XP_053942147.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086172.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..753
                     /product="serine/threonine-protein kinase TBK1"
                     /calculated_mol_wt=86660
     Region          15..330
                     /region_name="STKc_TBK1"
                     /note="Catalytic domain of the Serine/Threonine kinase,
                     TANK Binding Kinase 1; cd13988"
                     /db_xref="CDD:270890"
     Site            order(15..19,23,36,38,68,86..90,93,95,135,137,139..140,
                     142,156..157,160,175..178)
                     /site_type="active"
                     /db_xref="CDD:270890"
     Site            order(15..19,23,36,38,68,86..90,93,135,137,139..140,142,
                     156..157)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270890"
     Site            order(19,93,95,135,137,139,160,175..178)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270890"
     Site            156..178
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270890"
     Region          308..385
                     /region_name="Ubl_TBK1"
                     /note="ubiquitin-like (Ubl) domain found in TRAF family
                     member-associated NF-kappaB activator (TANK)-binding
                     kinase 1 (TBK1); cd17127"
                     /db_xref="CDD:340647"
     Site            order(316,353,382)
                     /site_type="other"
                     /note="putative hydrophobic patch [polypeptide binding]"
                     /db_xref="CDD:340647"
     Region          400..685
                     /region_name="TBK1_CCD1"
                     /note="TANK-binding kinase 1 coiled-coil domain 1;
                     pfam18394"
                     /db_xref="CDD:465742"
     Region          708..753
                     /region_name="TBK1_C"
                     /note="C-terminal domain of TANK-binding kinase 1;
                     cd21954"
                     /db_xref="CDD:409263"
     Site            order(712..713,715..717,719..720,723..724,726..727,
                     730..731,733..734,737..738,740..741,743..745,747..749)
                     /site_type="other"
                     /note="heterotetramer interface [polypeptide binding]"
                     /db_xref="CDD:409263"
     CDS             1..753
                     /gene="TBK1"
                     /coded_by="XM_054086172.1:5131..7392"
                     /db_xref="GeneID:104055187"
ORIGIN      
        1 mqstpnylwl lsdilgqgat anvfrgrhkk tgdlyavkvf nsisflrpvd vqmrefevlk
       61 klnhknivkl faieeetttr hkvlvmefcp cgslytvlee psnafglpes eflivlrdvv
      121 agmnhlreng ivhrdikpgn imrvigedgq svykltdfga areleddeqf vslygteeyl
      181 hpdmyeravl rkehqkkyga tvdlwsigvt fyhaatgslp frpfegprrn kevmykiitg
      241 kpsgaisgiq kaengpiews rempvscsls kglqvlltpv lanileadqe kcwgfdqffa
      301 etsdilhrii ihifslqqmt lhkvyihsyn taaifhdlvy kqtkipsqnq eliyegrrli
      361 lepgrlaqhf prtteenpif vvsreavnvv gliyeevllp kvhqrydlda dasmakavtg
      421 ivcyacrvas slllyqelmr kgirwlieii kddynetvhk ktevvirldf csrnidkaek
      481 iyenlmqinl easevdeise ihtkllrlss sqgtietslq diknklspgg lladtwanqe
      541 gmhpkdrnpe rlqallcsit diyyqfkkdk aerrlpynee qihkfdkqkl ylhatkaial
      601 fkdecvskyd tfldkaedwt rqaidffnsw qcslprfyrr kllkencfsf rkmlhtrkql
      661 laltnqcfdi eeeiskyqdy inelqdtlpq kifaassgmk htmntvypss ntlvemtlgm
      721 kklkeemegv vkelaennhi lerfgdlttd ggl
//
LOCUS       XP_053942160             419 aa            linear   VRT 09-MAR-2023
DEFINITION  ras association domain-containing protein 8 [Cuculus canorus].
ACCESSION   XP_053942160
VERSION     XP_053942160.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086185.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..419
                     /product="ras association domain-containing protein 8"
                     /calculated_mol_wt=48420
     Region          2..83
                     /region_name="RA_RASSF8"
                     /note="Ras-associating (RA) domain found in N-terminal
                     Ras-association domain family 8 (RASSF8); cd16134"
                     /db_xref="CDD:340551"
     Region          <145..>351
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..419
                     /gene="RASSF8"
                     /coded_by="XM_054086185.1:321..1580"
                     /db_xref="GeneID:104067130"
ORIGIN      
        1 melkvwvdgv qrivcgvtev ttcqevvial aqaigrtgry tliekwrdte rhlaphenpi
       61 vslnkwgqya sdvqlilrrt gpslserpts dsvarvpert lyrqslppla klrppgdrsm
      121 krrepkrksl tftggakglm difgkskese fkqkvlnnck ttadelkkli hlqteklqci
      181 ekqlesneae iryweqkyns sleeeilkle qkikrnevei eeeefwenel qieqenekql
      241 keqlqemrqr ilecesklkd ymsqihnmes gleaeklqre vqesqvneee vkekiekvkg
      301 eidiqgqqsl rlengikave rslgqatkrl qdreqeleql tkelrqvnlq qfiqqtgtkv
      361 tvlpadpvem eaphvelere ptfqsgslkr pgssrqlpsn lrilqnplss gfnpegiyv
//
LOCUS       XP_053942168             419 aa            linear   VRT 09-MAR-2023
DEFINITION  ras association domain-containing protein 8 [Cuculus canorus].
ACCESSION   XP_053942168
VERSION     XP_053942168.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086193.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..419
                     /product="ras association domain-containing protein 8"
                     /calculated_mol_wt=48420
     Region          2..83
                     /region_name="RA_RASSF8"
                     /note="Ras-associating (RA) domain found in N-terminal
                     Ras-association domain family 8 (RASSF8); cd16134"
                     /db_xref="CDD:340551"
     Region          <145..>351
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..419
                     /gene="RASSF8"
                     /coded_by="XM_054086193.1:230..1489"
                     /db_xref="GeneID:104067130"
ORIGIN      
        1 melkvwvdgv qrivcgvtev ttcqevvial aqaigrtgry tliekwrdte rhlaphenpi
       61 vslnkwgqya sdvqlilrrt gpslserpts dsvarvpert lyrqslppla klrppgdrsm
      121 krrepkrksl tftggakglm difgkskese fkqkvlnnck ttadelkkli hlqteklqci
      181 ekqlesneae iryweqkyns sleeeilkle qkikrnevei eeeefwenel qieqenekql
      241 keqlqemrqr ilecesklkd ymsqihnmes gleaeklqre vqesqvneee vkekiekvkg
      301 eidiqgqqsl rlengikave rslgqatkrl qdreqeleql tkelrqvnlq qfiqqtgtkv
      361 tvlpadpvem eaphvelere ptfqsgslkr pgssrqlpsn lrilqnplss gfnpegiyv
//
LOCUS       XP_053942184             234 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: uncharacterized protein LOC128854279 [Cuculus
            canorus].
ACCESSION   XP_053942184
VERSION     XP_053942184.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086209.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..234
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..234
                     /product="LOW QUALITY PROTEIN: uncharacterized protein
                     LOC128854279"
                     /calculated_mol_wt=26575
     Region          <1..42
                     /region_name="ps-ssRNAv_RdRp-like"
                     /note="conserved catalytic core domain of RNA-dependent
                     RNA polymerase (RdRp) from the positive-sense
                     single-stranded RNA [(+)ssRNA] viruses and closely related
                     viruses; cl40470"
                     /db_xref="CDD:477363"
     CDS             1..234
                     /gene="LOC128854279"
                     /coded_by="XM_054086209.1:202..906"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /db_xref="GeneID:128854279"
ORIGIN      
        1 mrfnkakcrv lhlghnnpmq ryrlgeewle scmeekdlgv lvdsrlnmsq qcaqvakkan
       61 gilacirngv xqqvqggysp svlstgetas rvlcsvlgpr teqkkdveal ervqrratkl
      121 vrglenksye erlrelglfs lekrrlrgdl itlynylkgg cgeegaglfs rvtgdrtrgn
      181 glklrqgrfr ldirkkfftv rvigywnrlp revvespsle vfkervdevl rdmv
//
LOCUS       XP_053942204             489 aa            linear   VRT 09-MAR-2023
DEFINITION  runt-related transcription factor 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053942204
VERSION     XP_053942204.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086229.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..489
                     /product="runt-related transcription factor 1 isoform X1"
                     /calculated_mol_wt=53049
     Region          75..203
                     /region_name="Runt"
                     /note="Runt domain; pfam00853"
                     /db_xref="CDD:459963"
     Region          397..489
                     /region_name="RunxI"
                     /note="Runx inhibition domain; pfam08504"
                     /db_xref="CDD:430037"
     CDS             1..489
                     /gene="RUNX1"
                     /coded_by="XM_054086229.1:13..1482"
                     /db_xref="GeneID:104064743"
ORIGIN      
        1 mnhgqfgmss plswtvylmr knraatgffd tstsrrftpp sttlspgkms eplplpgaeh
       61 sgalpgklrs adrsmvevla dhpgelvrtd spnflcsvlp thwrcnktlp iafkvvalgd
      121 vpdgtlvtvm agndenysae lrnataamkn qvarfndlrf vgrsgrgksf tltitvftnp
      181 pqvatyhrai kitvdgprep rrhrqkideq tkpgslsfse rlseleqlrr tamrvsphhp
      241 aptpnprasl nhttafnpqp qsqiqglffi adtrqvqpsp pwsydqsyqy lgsiatpsvh
      301 patpispgra sgmtsltael ssrlssasdl tafsdprvgi drsfsalpsi sdprmhypga
      361 ftytptpvss gigigmsams tatryhtylp ppypgssqaq gnpfqtssps yhlyygtsag
      421 syqfsmisgg drspprihpp ctnastgstl lnpnlpnqsd vveaegshsn sptnmvttar
      481 leeavwrpy
//
LOCUS       XP_009565403             483 aa            linear   VRT 09-MAR-2023
DEFINITION  runt-related transcription factor 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_009565403
VERSION     XP_009565403.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009567108.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009565403.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..483
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..483
                     /product="runt-related transcription factor 1 isoform X2"
                     /calculated_mol_wt=52400
     Region          75..203
                     /region_name="Runt"
                     /note="Runt domain; pfam00853"
                     /db_xref="CDD:459963"
     Region          391..483
                     /region_name="RunxI"
                     /note="Runx inhibition domain; pfam08504"
                     /db_xref="CDD:430037"
     CDS             1..483
                     /gene="RUNX1"
                     /coded_by="XM_009567108.2:13..1464"
                     /db_xref="GeneID:104064743"
ORIGIN      
        1 mnhgqfgmss plswtvylmr knraatgffd tstsrrftpp sttlspgkms eplplpgaeh
       61 sgalpgklrs adrsmvevla dhpgelvrtd spnflcsvlp thwrcnktlp iafkvvalgd
      121 vpdgtlvtvm agndenysae lrnataamkn qvarfndlrf vgrsgrgksf tltitvftnp
      181 pqvatyhrai kitvdgprep rrhrqkideq tkpgslsfse rlseleqlrr tamrvsphhp
      241 aptpnprasl nhttafnpqp qsqiqdtrqv qpsppwsydq syqylgsiat psvhpatpis
      301 pgrasgmtsl taelssrlss asdltafsdp rvgidrsfsa lpsisdprmh ypgaftytpt
      361 pvssgigigm samstatryh tylpppypgs sqaqgnpfqt sspsyhlyyg tsagsyqfsm
      421 isggdrsppr ihppctnast gstllnpnlp nqsdvveaeg shsnsptnmv ttarleeavw
      481 rpy
//
LOCUS       XP_053942220             478 aa            linear   VRT 09-MAR-2023
DEFINITION  runt-related transcription factor 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053942220
VERSION     XP_053942220.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086245.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..478
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..478
                     /product="runt-related transcription factor 1 isoform X3"
                     /calculated_mol_wt=51884
     Region          64..192
                     /region_name="Runt"
                     /note="Runt domain; pfam00853"
                     /db_xref="CDD:459963"
     Region          386..478
                     /region_name="RunxI"
                     /note="Runx inhibition domain; pfam08504"
                     /db_xref="CDD:430037"
     CDS             1..478
                     /gene="RUNX1"
                     /coded_by="XM_054086245.1:193..1629"
                     /db_xref="GeneID:104064743"
ORIGIN      
        1 mdsnsifesl psyqhflrdt stsrrftpps ttlspgkmse plplpgaehs galpgklrsa
       61 drsmvevlad hpgelvrtds pnflcsvlpt hwrcnktlpi afkvvalgdv pdgtlvtvma
      121 gndenysael rnataamknq varfndlrfv grsgrgksft ltitvftnpp qvatyhraik
      181 itvdgprepr rhrqkideqt kpgslsfser lseleqlrrt amrvsphhpa ptpnprasln
      241 httafnpqpq sqiqglffia dtrqvqpspp wsydqsyqyl gsiatpsvhp atpispgras
      301 gmtsltaels srlssasdlt afsdprvgid rsfsalpsis dprmhypgaf tytptpvssg
      361 igigmsamst atryhtylpp pypgssqaqg npfqtsspsy hlyygtsags yqfsmisggd
      421 rspprihppc tnastgstll npnlpnqsdv veaegshsns ptnmvttarl eeavwrpy
//
LOCUS       XP_009565404             465 aa            linear   VRT 09-MAR-2023
DEFINITION  runt-related transcription factor 1 isoform X4 [Cuculus canorus].
ACCESSION   XP_009565404
VERSION     XP_009565404.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009567109.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009565404.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..465
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..465
                     /product="runt-related transcription factor 1 isoform X4"
                     /calculated_mol_wt=50328
     Region          51..179
                     /region_name="Runt"
                     /note="Runt domain; pfam00853"
                     /db_xref="CDD:459963"
     Region          373..465
                     /region_name="RunxI"
                     /note="Runx inhibition domain; pfam08504"
                     /db_xref="CDD:430037"
     CDS             1..465
                     /gene="RUNX1"
                     /coded_by="XM_009567109.2:1129..2526"
                     /db_xref="GeneID:104064743"
ORIGIN      
        1 mripvdtsts rrftppsttl spgkmseplp lpgaehsgal pgklrsadrs mvevladhpg
       61 elvrtdspnf lcsvlpthwr cnktlpiafk vvalgdvpdg tlvtvmagnd enysaelrna
      121 taamknqvar fndlrfvgrs grgksftlti tvftnppqva tyhraikitv dgpreprrhr
      181 qkideqtkpg slsfserlse leqlrrtamr vsphhpaptp npraslnhtt afnpqpqsqi
      241 qglffiadtr qvqpsppwsy dqsyqylgsi atpsvhpatp ispgrasgmt sltaelssrl
      301 ssasdltafs dprvgidrsf salpsisdpr mhypgaftyt ptpvssgigi gmsamstatr
      361 yhtylpppyp gssqaqgnpf qtsspsyhly ygtsagsyqf smisggdrsp prihppctna
      421 stgstllnpn lpnqsdvvea egshsnsptn mvttarleea vwrpy
//
LOCUS       XP_053942237             429 aa            linear   VRT 09-MAR-2023
DEFINITION  runt-related transcription factor 1 isoform X5 [Cuculus canorus].
ACCESSION   XP_053942237
VERSION     XP_053942237.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086262.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..429
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..429
                     /product="runt-related transcription factor 1 isoform X5"
                     /calculated_mol_wt=46609
     Region          75..203
                     /region_name="Runt"
                     /note="Runt domain; pfam00853"
                     /db_xref="CDD:459963"
     Region          337..429
                     /region_name="RunxI"
                     /note="Runx inhibition domain; pfam08504"
                     /db_xref="CDD:430037"
     CDS             1..429
                     /gene="RUNX1"
                     /coded_by="XM_054086262.1:13..1302"
                     /db_xref="GeneID:104064743"
ORIGIN      
        1 mnhgqfgmss plswtvylmr knraatgffd tstsrrftpp sttlspgkms eplplpgaeh
       61 sgalpgklrs adrsmvevla dhpgelvrtd spnflcsvlp thwrcnktlp iafkvvalgd
      121 vpdgtlvtvm agndenysae lrnataamkn qvarfndlrf vgrsgrgksf tltitvftnp
      181 pqvatyhrai kitvdgprep rrhrqkideq tkpgslsfse rlseleqlrr tamrvsphhp
      241 aptpnprasl nhttafnpqp qsqiqgasdl tafsdprvgi drsfsalpsi sdprmhypga
      301 ftytptpvss gigigmsams tatryhtylp ppypgssqaq gnpfqtssps yhlyygtsag
      361 syqfsmisgg drspprihpp ctnastgstl lnpnlpnqsd vveaegshsn sptnmvttar
      421 leeavwrpy
//
LOCUS       XP_053942247             419 aa            linear   VRT 09-MAR-2023
DEFINITION  runt-related transcription factor 1 isoform X6 [Cuculus canorus].
ACCESSION   XP_053942247
VERSION     XP_053942247.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086272.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..419
                     /product="runt-related transcription factor 1 isoform X6"
                     /calculated_mol_wt=45080
     Region          75..202
                     /region_name="Runt"
                     /note="Runt domain; pfam00853"
                     /db_xref="CDD:459963"
     Region          327..419
                     /region_name="RunxI"
                     /note="Runx inhibition domain; pfam08504"
                     /db_xref="CDD:430037"
     CDS             1..419
                     /gene="RUNX1"
                     /coded_by="XM_054086272.1:13..1272"
                     /db_xref="GeneID:104064743"
ORIGIN      
        1 mnhgqfgmss plswtvylmr knraatgffd tstsrrftpp sttlspgkms eplplpgaeh
       61 sgalpgklrs adrsmvevla dhpgelvrtd spnflcsvlp thwrcnktlp iafkvvalgd
      121 vpdgtlvtvm agndenysae lrnataamkn qvarfndlrf vgrsgrgksf tltitvftnp
      181 pqvatyhrai kitvdgprep rntrqvqpsp pwsydqsyqy lgsiatpsvh patpispgra
      241 sgmtsltael ssrlssasdl tafsdprvgi drsfsalpsi sdprmhypga ftytptpvss
      301 gigigmsams tatryhtylp ppypgssqaq gnpfqtssps yhlyygtsag syqfsmisgg
      361 drspprihpp ctnastgstl lnpnlpnqsd vveaegshsn sptnmvttar leeavwrpy
//
LOCUS       XP_009561698             327 aa            linear   VRT 09-MAR-2023
DEFINITION  ras association domain-containing protein 3 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009561698
VERSION     XP_009561698.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563403.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561698.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..327
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..327
                     /product="ras association domain-containing protein 3
                     isoform X1"
                     /calculated_mol_wt=37153
     Region          128..272
                     /region_name="RA_RASSF3"
                     /note="Ras-associating (RA) domain found in
                     Ras-association domain-containing protein 3 (RASSF3);
                     cd17219"
                     /db_xref="CDD:340739"
     Site            order(143,145..146,159,192,194..199,201,218..220)
                     /site_type="other"
                     /note="putative RA-Ras interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:340739"
     Region          278..323
                     /region_name="SARAH_RASSF3"
                     /note="C-terminal SARAH domain found in Ras-association
                     domain-containing protein 3 (RASSF3); cd21891"
                     /db_xref="CDD:439185"
     Site            order(279..280,282,284,287,291,294..295,297..298,301..302,
                     305..306,308..309,312..313,316,319..320)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:439185"
     CDS             1..327
                     /gene="RASSF3"
                     /coded_by="XM_009563403.2:29..1012"
                     /db_xref="GeneID:104061453"
ORIGIN      
        1 mrverrqhca traqpkaalp relvrqegsg agraappppp ppapppprer rgpcggrdgv
       61 arlrwqrqpv pmswsssmss gyssleeees eeffftarts ffrrppgktr aapqdvqken
      121 ephvylskee vkekiqsyns svtdklkmtl nangiytgfi kvhlelcrpi tvqssqsqgr
      181 cahsnnetaf ylpdgcvntl hisstntvre vieallkkff vadnpakfal ykrchkedqv
      241 ytcklsdreh plylrlvagp rtemlsfvlr ehetgevmwe afsipelrnf lrildkeene
      301 qlqilknrya ayrdkleeal ggvwkpg
//
LOCUS       XP_053942265             295 aa            linear   VRT 09-MAR-2023
DEFINITION  ras association domain-containing protein 3 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053942265
VERSION     XP_053942265.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086290.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..295
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..295
                     /product="ras association domain-containing protein 3
                     isoform X2"
                     /calculated_mol_wt=34229
     Region          <40..59
                     /region_name="C1"
                     /note="protein kinase C conserved region 1 (C1 domain)
                     superfamily; cl00040"
                     /db_xref="CDD:412127"
     Region          96..240
                     /region_name="RA_RASSF3"
                     /note="Ras-associating (RA) domain found in
                     Ras-association domain-containing protein 3 (RASSF3);
                     cd17219"
                     /db_xref="CDD:340739"
     Site            order(111,113..114,127,160,162..167,169,186..188)
                     /site_type="other"
                     /note="putative RA-Ras interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:340739"
     Region          246..291
                     /region_name="SARAH_RASSF3"
                     /note="C-terminal SARAH domain found in Ras-association
                     domain-containing protein 3 (RASSF3); cd21891"
                     /db_xref="CDD:439185"
     Site            order(247..248,250,252,255,259,262..263,265..266,269..270,
                     273..274,276..277,280..281,284,287..288)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:439185"
     CDS             1..295
                     /gene="RASSF3"
                     /coded_by="XM_054086290.1:16..903"
                     /db_xref="GeneID:104061453"
ORIGIN      
        1 mairndlrkt irrlarffyw fpkslsssrr rtvkllwksa dcrytchahc rdlvhlgcqr
       61 ngklmdclap hdtldpsynn nqdvqkenep hvylskeevk ekiqsynssv tdklkmtlna
      121 ngiytgfikv hlelcrpitv qssqsqgrca hsnnetafyl pdgcvntlhi sstntvrevi
      181 eallkkffva dnpakfalyk rchkedqvyt cklsdrehpl ylrlvagprt emlsfvlreh
      241 etgevmweaf sipelrnflr ildkeeneql qilknryaay rdkleealgg vwkpg
//
LOCUS       XP_053942271             263 aa            linear   VRT 09-MAR-2023
DEFINITION  ras association domain-containing protein 3 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053942271
VERSION     XP_053942271.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086296.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..263
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..263
                     /product="ras association domain-containing protein 3
                     isoform X3"
                     /calculated_mol_wt=30338
     Region          <10..27
                     /region_name="C1"
                     /note="protein kinase C conserved region 1 (C1 domain)
                     superfamily; cl00040"
                     /db_xref="CDD:412127"
     Region          64..208
                     /region_name="RA_RASSF3"
                     /note="Ras-associating (RA) domain found in
                     Ras-association domain-containing protein 3 (RASSF3);
                     cd17219"
                     /db_xref="CDD:340739"
     Site            order(79,81..82,95,128,130..135,137,154..156)
                     /site_type="other"
                     /note="putative RA-Ras interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:340739"
     Region          214..259
                     /region_name="SARAH_RASSF3"
                     /note="C-terminal SARAH domain found in Ras-association
                     domain-containing protein 3 (RASSF3); cd21891"
                     /db_xref="CDD:439185"
     Site            order(215..216,218,220,223,227,230..231,233..234,237..238,
                     241..242,244..245,248..249,252,255..256)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:439185"
     CDS             1..263
                     /gene="RASSF3"
                     /coded_by="XM_054086296.1:16..807"
                     /db_xref="GeneID:104061453"
ORIGIN      
        1 mivlwdikyc rytchahcrd lvhlgcqrng klmdclaphd tldpsynnnq dvqkenephv
       61 ylskeevkek iqsynssvtd klkmtlnang iytgfikvhl elcrpitvqs sqsqgrcahs
      121 nnetafylpd gcvntlhiss tntvreviea llkkffvadn pakfalykrc hkedqvytck
      181 lsdrehplyl rlvagprtem lsfvlrehet gevmweafsi pelrnflril dkeeneqlqi
      241 lknryaayrd kleealggvw kpg
//
LOCUS       XP_053942281             231 aa            linear   VRT 09-MAR-2023
DEFINITION  ras association domain-containing protein 3 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053942281
VERSION     XP_053942281.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086306.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..231
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..231
                     /product="ras association domain-containing protein 3
                     isoform X4"
                     /calculated_mol_wt=26509
     Region          32..176
                     /region_name="RA_RASSF3"
                     /note="Ras-associating (RA) domain found in
                     Ras-association domain-containing protein 3 (RASSF3);
                     cd17219"
                     /db_xref="CDD:340739"
     Site            order(47,49..50,63,96,98..103,105,122..124)
                     /site_type="other"
                     /note="putative RA-Ras interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:340739"
     Region          182..227
                     /region_name="SARAH_RASSF3"
                     /note="C-terminal SARAH domain found in Ras-association
                     domain-containing protein 3 (RASSF3); cd21891"
                     /db_xref="CDD:439185"
     Site            order(183..184,186,188,191,195,198..199,201..202,205..206,
                     209..210,212..213,216..217,220,223..224)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:439185"
     CDS             1..231
                     /gene="RASSF3"
                     /coded_by="XM_054086306.1:178..873"
                     /db_xref="GeneID:104061453"
ORIGIN      
        1 mdclaphdtl dpsynnnqdv qkenephvyl skeevkekiq synssvtdkl kmtlnangiy
       61 tgfikvhlel crpitvqssq sqgrcahsnn etafylpdgc vntlhisstn tvrevieall
      121 kkffvadnpa kfalykrchk edqvytckls drehplylrl vagprtemls fvlrehetge
      181 vmweafsipe lrnflrildk eeneqlqilk nryaayrdkl eealggvwkp g
//
LOCUS       XP_009559174             477 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protease serine 3 [Cuculus canorus].
ACCESSION   XP_009559174
VERSION     XP_009559174.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560879.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009559174.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..477
                     /product="transmembrane protease serine 3"
                     /calculated_mol_wt=52519
     Region          98..130
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(100,109,120..121)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(113,116,120,126..127)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            123..127
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          135..234
                     /region_name="SRCR_2"
                     /note="Scavenger receptor cysteine-rich domain; pfam15494"
                     /db_xref="CDD:464747"
     Region          240..469
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cd00190"
                     /db_xref="CDD:238113"
     Site            240
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(280,327,423)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(417,442,444)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..477
                     /gene="TMPRSS3"
                     /coded_by="XM_009560879.2:1..1434"
                     /db_xref="GeneID:104059236"
ORIGIN      
        1 mtsqeeiqet npttgsleii aitedespvp eiqfsfkrff fipqakvdps adgsgdiepp
       61 svchafislk yfpyicglfl avilavaigl gvqyncigkf rcrssfkciq ksarcngvfn
      121 ckegedeyrc vrlsgkkavl qvftsgswrt vcsddwkaey gnttckhlgf ssyvssgylp
      181 vaavekqfqr hfvslsywls adqmtplhna tnlreectsg kviilkclac gtrasyrpri
      241 vggnassprq wpwqvslqfh ghhlcggsvi tprwiitaah cvydlylpss wsvqvgfvtq
      301 qdtqvhpysv ekiiyhrnyk pktmgndial mklaaplvln ghiepiclpn fgeqfpegkm
      361 cwvsgwgatv eggdtsdtmn yagvplisna icnhrdvygg iitssmlcag flkggvdtcq
      421 gdsggplace dmsvwklvgt tsfgvgcaek nkpgvysrtt sfldwiheqm ereelqt
//
LOCUS       XP_053942303             679 aa            linear   VRT 09-MAR-2023
DEFINITION  alkylated DNA repair protein alkB homolog 8 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053942303
VERSION     XP_053942303.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086328.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..679
                     /product="alkylated DNA repair protein alkB homolog 8
                     isoform X1"
                     /calculated_mol_wt=76601
     Region          49..129
                     /region_name="RRM_ALKBH8"
                     /note="RNA recognition motif (RRM) found in alkylated DNA
                     repair protein alkB homolog 8 (ALKBH8) and similar
                     proteins; cd12431"
                     /db_xref="CDD:409865"
     Region          143..342
                     /region_name="2OG-FeII_Oxy"
                     /note="2OG-Fe(II) oxygenase superfamily; cl21496"
                     /db_xref="CDD:473886"
     Region          390..516
                     /region_name="UbiE"
                     /note="Ubiquinone/menaquinone biosynthesis C-methylase
                     UbiE/MenG [Coenzyme transport and metabolism]; COG2226"
                     /db_xref="CDD:441828"
     CDS             1..679
                     /gene="ALKBH8"
                     /coded_by="XM_054086328.1:520..2559"
                     /db_xref="GeneID:104055340"
ORIGIN      
        1 mqitsmevkt sedrlkvhkm kkkvlrkqlr aqhtlmrheg ikcishaaqs lvisnaglgn
       61 gmsrhqllri veeyglvetl lmppnkpysf vkygtteeak kafdalngke vtledfgqni
      121 vlyinfvekv fwqnavptsl ppglmvieki ispeeerrml esidwigded tqnaektlkh
      181 rrvkhfgyef cydnnnvdkd kplpgglpei cdlflekclk qgyikhkpdq ltvnqyepgq
      241 gipphidths afedeiisls lgaeivmdfk hpdgrtvaim lprcsllvma gesrylwthg
      301 itprkydviq aselgqkvgt itadvgdltl nrrgtrisft frkvrrspcn cfypsvcdsq
      361 kgqqtqvqps fphsemeask leqeyvhkvy eeiarhfsst rhspwprive flrslpkgsi
      421 vadvgcgngk ylginedlym igcdrsknlv dicgeknfqa fvcdalsvpi csgscdacis
      481 iavihhfsta errlaairel arllrpggta liyvwameqe yknqkskylk eksgskdkee
      541 eigtgttqrl lsdqmpnnss qdsacsdrll ndskdkgcda kavtgsrlpv htnrtsfhsq
      601 dmlvpwhlkg dtekkggsvs ttsfpaglke mqdlssvfhr yyhvfcegel eascrlldcv
      661 rvqksyydqg nwcvvlekl
//
LOCUS       XP_053942314             674 aa            linear   VRT 09-MAR-2023
DEFINITION  alkylated DNA repair protein alkB homolog 8 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053942314
VERSION     XP_053942314.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086339.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..674
                     /product="alkylated DNA repair protein alkB homolog 8
                     isoform X2"
                     /calculated_mol_wt=76040
     Region          44..124
                     /region_name="RRM_ALKBH8"
                     /note="RNA recognition motif (RRM) found in alkylated DNA
                     repair protein alkB homolog 8 (ALKBH8) and similar
                     proteins; cd12431"
                     /db_xref="CDD:409865"
     Region          138..337
                     /region_name="2OG-FeII_Oxy"
                     /note="2OG-Fe(II) oxygenase superfamily; cl21496"
                     /db_xref="CDD:473886"
     Region          385..511
                     /region_name="UbiE"
                     /note="Ubiquinone/menaquinone biosynthesis C-methylase
                     UbiE/MenG [Coenzyme transport and metabolism]; COG2226"
                     /db_xref="CDD:441828"
     CDS             1..674
                     /gene="ALKBH8"
                     /coded_by="XM_054086339.1:116..2140"
                     /db_xref="GeneID:104055340"
ORIGIN      
        1 mevktsedrl kvhkmkkkvl rkqlraqhtl mrhegikcis haaqslvisn aglgngmsrh
       61 qllriveeyg lvetllmppn kpysfvkygt teeakkafda lngkevtled fgqnivlyin
      121 fvekvfwqna vptslppglm viekiispee errmlesidw igdedtqnae ktlkhrrvkh
      181 fgyefcydnn nvdkdkplpg glpeicdlfl ekclkqgyik hkpdqltvnq yepgqgipph
      241 idthsafede iislslgaei vmdfkhpdgr tvaimlprcs llvmagesry lwthgitprk
      301 ydviqaselg qkvgtitadv gdltlnrrgt risftfrkvr rspcncfyps vcdsqkgqqt
      361 qvqpsfphse measkleqey vhkvyeeiar hfsstrhspw priveflrsl pkgsivadvg
      421 cgngkylgin edlymigcdr sknlvdicge knfqafvcda lsvpicsgsc dacisiavih
      481 hfstaerrla airelarllr pggtaliyvw ameqeyknqk skylkeksgs kdkeeeigtg
      541 ttqrllsdqm pnnssqdsac sdrllndskd kgcdakavtg srlpvhtnrt sfhsqdmlvp
      601 whlkgdtekk ggsvsttsfp aglkemqdls svfhryyhvf cegeleascr lldcvrvqks
      661 yydqgnwcvv lekl
//
LOCUS       XP_053942324             618 aa            linear   VRT 09-MAR-2023
DEFINITION  alkylated DNA repair protein alkB homolog 8 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053942324
VERSION     XP_053942324.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086349.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..618
                     /product="alkylated DNA repair protein alkB homolog 8
                     isoform X3"
                     /calculated_mol_wt=69752
     Region          1..68
                     /region_name="RRM_ALKBH8"
                     /note="RNA recognition motif (RRM) found in alkylated DNA
                     repair protein alkB homolog 8 (ALKBH8) and similar
                     proteins; cd12431"
                     /db_xref="CDD:409865"
     Region          82..281
                     /region_name="2OG-FeII_Oxy"
                     /note="2OG-Fe(II) oxygenase superfamily; cl21496"
                     /db_xref="CDD:473886"
     Region          329..455
                     /region_name="UbiE"
                     /note="Ubiquinone/menaquinone biosynthesis C-methylase
                     UbiE/MenG [Coenzyme transport and metabolism]; COG2226"
                     /db_xref="CDD:441828"
     CDS             1..618
                     /gene="ALKBH8"
                     /coded_by="XM_054086349.1:262..2118"
                     /db_xref="GeneID:104055340"
ORIGIN      
        1 msrhqllriv eeyglvetll mppnkpysfv kygtteeakk afdalngkev tledfgqniv
       61 lyinfvekvf wqnavptslp pglmviekii speeerrmle sidwigdedt qnaektlkhr
      121 rvkhfgyefc ydnnnvdkdk plpgglpeic dlflekclkq gyikhkpdql tvnqyepgqg
      181 ipphidthsa fedeiislsl gaeivmdfkh pdgrtvaiml prcsllvmag esrylwthgi
      241 tprkydviqa selgqkvgti tadvgdltln rrgtrisftf rkvrrspcnc fypsvcdsqk
      301 gqqtqvqpsf phsemeaskl eqeyvhkvye eiarhfsstr hspwprivef lrslpkgsiv
      361 advgcgngky lginedlymi gcdrsknlvd icgeknfqaf vcdalsvpic sgscdacisi
      421 avihhfstae rrlaairela rllrpggtal iyvwameqey knqkskylke ksgskdkeee
      481 igtgttqrll sdqmpnnssq dsacsdrlln dskdkgcdak avtgsrlpvh tnrtsfhsqd
      541 mlvpwhlkgd tekkggsvst tsfpaglkem qdlssvfhry yhvfcegele ascrlldcvr
      601 vqksyydqgn wcvvlekl
//
LOCUS       XP_053942343             137 aa            linear   VRT 09-MAR-2023
DEFINITION  chemokine-like protein TAFA-2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053942343
VERSION     XP_053942343.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086368.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..137
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..137
                     /product="chemokine-like protein TAFA-2 isoform X1"
                     /calculated_mol_wt=15273
     Region          41..129
                     /region_name="TAFA"
                     /note="TAFA family; pfam12020"
                     /db_xref="CDD:432266"
     CDS             1..137
                     /gene="TAFA2"
                     /coded_by="XM_054086368.1:748..1161"
                     /db_xref="GeneID:104061463"
ORIGIN      
        1 mskrylpkat kgklliiifv vtlwgklasg anhhkahhvk tgtcevvalh rccnknkiee
       61 rsqtvkcscf pgqvagttra apscvdasiv eqkwwchmqp clegeeckvl pdrkgwscss
      121 gnkvkttrlw qyswsqm
//
LOCUS       XP_053942353             131 aa            linear   VRT 09-MAR-2023
DEFINITION  chemokine-like protein TAFA-2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053942353
VERSION     XP_053942353.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086378.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..131
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..131
                     /product="chemokine-like protein TAFA-2 isoform X2"
                     /calculated_mol_wt=14419
     Region          41..129
                     /region_name="TAFA"
                     /note="TAFA family; pfam12020"
                     /db_xref="CDD:432266"
     CDS             1..131
                     /gene="TAFA2"
                     /coded_by="XM_054086378.1:743..1138"
                     /db_xref="GeneID:104061463"
ORIGIN      
        1 mskrylpkat kgklliiifv vtlwgklasg anhhkahhvk tgtcevvalh rccnknkiee
       61 rsqtvkcscf pgqvagttra apscvdasiv eqkwwchmqp clegeeckvl pdrkgwscss
      121 gnkvkttrvt r
//
LOCUS       XP_053942365             508 aa            linear   VRT 09-MAR-2023
DEFINITION  fibroblast growth factor receptor substrate 2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053942365
VERSION     XP_053942365.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086390.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..508
                     /product="fibroblast growth factor receptor substrate 2
                     isoform X1"
                     /calculated_mol_wt=57075
     Region          15..106
                     /region_name="PTB_FRS2"
                     /note="Fibroblast growth factor receptor substrate 2
                     phosphotyrosine-binding domain; cd01202"
                     /db_xref="CDD:269913"
     Site            order(25..28,33,36,47,49..50,55,57,60,62..69,71,73..74,82,
                     85..89,98,102,105)
                     /site_type="other"
                     /note="phosphopeptide binding site [polypeptide binding]"
                     /db_xref="CDD:269913"
     CDS             1..508
                     /gene="FRS2"
                     /coded_by="XM_054086390.1:269..1795"
                     /db_xref="GeneID:104063834"
ORIGIN      
        1 mgsccscpdk etvpdnhrnk fkvinvdddg nelgsgimel tdtelilytr krdsvkwhyl
       61 clrrygydsn lfsfesgrrc qtgqgifafk caraeelfnm lqeimqnnsi nvveepvver
      121 nnhqteleap rtprtpttpg fnaqslpngy prypsfgdas shpssrhpsv gsarlpsvge
      181 esthpllvae eqvhtyvntt gvqeerknrs svhapleskl sntettkvke dqmctddrda
      241 qvllepegvk fvlgptpvqr qlmerekleq lgrdqvsgss tnntewdtgy dsderretps
      301 gnklvyenin rlsipsasgv rrgrltstst sdaqninnsa qrrtallnye nlpslppvwe
      361 arklsrdedd slgpktpsln gyhnnldpmh nyvntenvtv pasahkveft rrrdctptvf
      421 nfdirrpsle hrqlnyiqvd leggsdsdnp qtpktpttpl pqtptrrtel yavidierta
      481 amsslqkalp rddgtsrktr hnstdlpm
//
LOCUS       XP_053942373             508 aa            linear   VRT 09-MAR-2023
DEFINITION  fibroblast growth factor receptor substrate 2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053942373
VERSION     XP_053942373.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086398.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..508
                     /product="fibroblast growth factor receptor substrate 2
                     isoform X1"
                     /calculated_mol_wt=57075
     Region          15..106
                     /region_name="PTB_FRS2"
                     /note="Fibroblast growth factor receptor substrate 2
                     phosphotyrosine-binding domain; cd01202"
                     /db_xref="CDD:269913"
     Site            order(25..28,33,36,47,49..50,55,57,60,62..69,71,73..74,82,
                     85..89,98,102,105)
                     /site_type="other"
                     /note="phosphopeptide binding site [polypeptide binding]"
                     /db_xref="CDD:269913"
     CDS             1..508
                     /gene="FRS2"
                     /coded_by="XM_054086398.1:152..1678"
                     /db_xref="GeneID:104063834"
ORIGIN      
        1 mgsccscpdk etvpdnhrnk fkvinvdddg nelgsgimel tdtelilytr krdsvkwhyl
       61 clrrygydsn lfsfesgrrc qtgqgifafk caraeelfnm lqeimqnnsi nvveepvver
      121 nnhqteleap rtprtpttpg fnaqslpngy prypsfgdas shpssrhpsv gsarlpsvge
      181 esthpllvae eqvhtyvntt gvqeerknrs svhapleskl sntettkvke dqmctddrda
      241 qvllepegvk fvlgptpvqr qlmerekleq lgrdqvsgss tnntewdtgy dsderretps
      301 gnklvyenin rlsipsasgv rrgrltstst sdaqninnsa qrrtallnye nlpslppvwe
      361 arklsrdedd slgpktpsln gyhnnldpmh nyvntenvtv pasahkveft rrrdctptvf
      421 nfdirrpsle hrqlnyiqvd leggsdsdnp qtpktpttpl pqtptrrtel yavidierta
      481 amsslqkalp rddgtsrktr hnstdlpm
//
LOCUS       XP_053942381             409 aa            linear   VRT 09-MAR-2023
DEFINITION  fibroblast growth factor receptor substrate 2 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053942381
VERSION     XP_053942381.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086406.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..409
                     /product="fibroblast growth factor receptor substrate 2
                     isoform X2"
                     /calculated_mol_wt=45680
     CDS             1..409
                     /gene="FRS2"
                     /coded_by="XM_054086406.1:204..1433"
                     /db_xref="GeneID:104063834"
ORIGIN      
        1 mlqeimqnns invveepvve rnnhqtelea prtprtpttp gfnaqslpng yprypsfgda
       61 sshpssrhps vgsarlpsvg eesthpllva eeqvhtyvnt tgvqeerknr ssvhaplesk
      121 lsntettkvk edqmctddrd aqvllepegv kfvlgptpvq rqlmerekle qlgrdqvsgs
      181 stnntewdtg ydsderretp sgnklvyeni nrlsipsasg vrrgrltsts tsdaqninns
      241 aqrrtallny enlpslppvw earklsrded dslgpktpsl ngyhnnldpm hnyvntenvt
      301 vpasahkvef trrrdctptv fnfdirrpsl ehrqlnyiqv dleggsdsdn pqtpktpttp
      361 lpqtptrrte lyavidiert aamsslqkal prddgtsrkt rhnstdlpm
//
LOCUS       XP_053942393             975 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase CBL-B isoform X1 [Cuculus canorus].
ACCESSION   XP_053942393
VERSION     XP_053942393.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086418.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..975
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..975
                     /product="E3 ubiquitin-protein ligase CBL-B isoform X1"
                     /calculated_mol_wt=109022
     Region          34..160
                     /region_name="Cbl_N"
                     /note="CBL proto-oncogene N-terminal domain 1; pfam02262"
                     /db_xref="CDD:426685"
     Region          164..247
                     /region_name="Cbl_N2"
                     /note="CBL proto-oncogene N-terminus, EF hand-like domain;
                     pfam02761"
                     /db_xref="CDD:460681"
     Region          241..337
                     /region_name="SH2_Cbl-b_TKB"
                     /note="Src homology 2 (SH2) domain found in the Cbl-b TKB
                     domain; cd09920"
                     /db_xref="CDD:198176"
     Site            order(259,279,281..284,289,301,303)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:198176"
     Site            order(304..307,320..322)
                     /site_type="other"
                     /note="hydrophobic binding pocket [polypeptide binding]"
                     /db_xref="CDD:198176"
     Region          344..419
                     /region_name="RING-HC_Cbl-b"
                     /note="RING finger, HC subclass, found in E3
                     ubiquitin-protein ligase Cbl-b and similar proteins;
                     cd16709"
                     /db_xref="CDD:438369"
     Region          <348..526
                     /region_name="HRD1"
                     /note="HRD ubiquitin ligase complex, ER membrane component
                     [Posttranslational modification, protein turnover,
                     chaperones]; COG5243"
                     /db_xref="CDD:227568"
     Site            order(355..356,359,383,402..405)
                     /site_type="other"
                     /note="ubiquitin binding site [polypeptide binding]"
                     /db_xref="CDD:438369"
     Site            order(359..361,367..370,389,392..393,396,402..403,405)
                     /site_type="other"
                     /note="E2 binding site [polypeptide binding]"
                     /db_xref="CDD:438369"
     Region          923..963
                     /region_name="UBA_Cbl-b"
                     /note="UBA domain found in E3 ubiquitin-protein ligase
                     Cbl-b and similar proteins; cd14392"
                     /db_xref="CDD:270575"
     Site            order(925..926,928..930,932..933,938,942)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270575"
     CDS             1..975
                     /gene="CBLB"
                     /coded_by="XM_054086418.1:134..3061"
                     /db_xref="GeneID:104056174"
ORIGIN      
        1 manslngrnp rkgrilgfid aiqdavgppk qaaadrrtve ktwklmdkvv rlcqnpklql
       61 knsppyildi lpdtyqhlrl ilskyddnqk laqlseneyf kiyidslmkk skrairlfke
      121 gkermyeeqs qdrrnltkls lifshmlaei kaifpngqfq gdnfritkad aadfwrkffg
      181 dktivpwkvf rqclhevhqi ssgleamalk stidltcndy isifefdift rlfqpwgsil
      241 rnwnflavth pgymafltyd evkarlqkys tkpgsyifrl sctrlgqwai gyvtgdgnil
      301 qtiphnkplf qalidgsreg fylfpdgrsy npdltglcep tphdhikvtq eqyelycemg
      361 stfqlckica endkdvkiep cghlmctscl tawqesdgqg cpfcrceikg tepiivdpfd
      421 prdensrccs iidsfsmpml dldddddree slmmnrlasv rkcnerqnsp vtspgssplv
      481 qrrkplpdpl qiphlslppv pprldliqkg varspcaspt gspksspcmv rkqdkplpap
      541 ppplrdpppp pperpppipp dnrisrhlhh pesvpsrdqp mplegwcprd vfgtnqlvgc
      601 rigsdaspkp gltaisning rhnrissdpg fmrkhrrhel paegakifsn ghlvneeydv
      661 pprlspplpt asvvpsmkcp assanslsdk srdhpddddd deykipsshp vvlssqplhs
      721 hntkplarvc engqcagvmn gthsttsemk kskhpelgda ydaptvpvpl pparppptrd
      781 npkhssllnr tpsdydllvp plgedafdss ppslpppppp arhsmiehtk pagsgnrpss
      841 ghelflhsdp hfdlitghvp lpparrvtge nvktnrtsqd ydqlppssdg sqaparppkp
      901 lprrtapeih hrkayssdss menvdakiak lmgegysfee vkraleiaqn nvdvarsilr
      961 efvcfpppvs prlnl
//
LOCUS       XP_053942403             975 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase CBL-B isoform X1 [Cuculus canorus].
ACCESSION   XP_053942403
VERSION     XP_053942403.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086428.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..975
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..975
                     /product="E3 ubiquitin-protein ligase CBL-B isoform X1"
                     /calculated_mol_wt=109022
     Region          34..160
                     /region_name="Cbl_N"
                     /note="CBL proto-oncogene N-terminal domain 1; pfam02262"
                     /db_xref="CDD:426685"
     Region          164..247
                     /region_name="Cbl_N2"
                     /note="CBL proto-oncogene N-terminus, EF hand-like domain;
                     pfam02761"
                     /db_xref="CDD:460681"
     Region          241..337
                     /region_name="SH2_Cbl-b_TKB"
                     /note="Src homology 2 (SH2) domain found in the Cbl-b TKB
                     domain; cd09920"
                     /db_xref="CDD:198176"
     Site            order(259,279,281..284,289,301,303)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:198176"
     Site            order(304..307,320..322)
                     /site_type="other"
                     /note="hydrophobic binding pocket [polypeptide binding]"
                     /db_xref="CDD:198176"
     Region          344..419
                     /region_name="RING-HC_Cbl-b"
                     /note="RING finger, HC subclass, found in E3
                     ubiquitin-protein ligase Cbl-b and similar proteins;
                     cd16709"
                     /db_xref="CDD:438369"
     Region          <348..526
                     /region_name="HRD1"
                     /note="HRD ubiquitin ligase complex, ER membrane component
                     [Posttranslational modification, protein turnover,
                     chaperones]; COG5243"
                     /db_xref="CDD:227568"
     Site            order(355..356,359,383,402..405)
                     /site_type="other"
                     /note="ubiquitin binding site [polypeptide binding]"
                     /db_xref="CDD:438369"
     Site            order(359..361,367..370,389,392..393,396,402..403,405)
                     /site_type="other"
                     /note="E2 binding site [polypeptide binding]"
                     /db_xref="CDD:438369"
     Region          923..963
                     /region_name="UBA_Cbl-b"
                     /note="UBA domain found in E3 ubiquitin-protein ligase
                     Cbl-b and similar proteins; cd14392"
                     /db_xref="CDD:270575"
     Site            order(925..926,928..930,932..933,938,942)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270575"
     CDS             1..975
                     /gene="CBLB"
                     /coded_by="XM_054086428.1:37..2964"
                     /db_xref="GeneID:104056174"
ORIGIN      
        1 manslngrnp rkgrilgfid aiqdavgppk qaaadrrtve ktwklmdkvv rlcqnpklql
       61 knsppyildi lpdtyqhlrl ilskyddnqk laqlseneyf kiyidslmkk skrairlfke
      121 gkermyeeqs qdrrnltkls lifshmlaei kaifpngqfq gdnfritkad aadfwrkffg
      181 dktivpwkvf rqclhevhqi ssgleamalk stidltcndy isifefdift rlfqpwgsil
      241 rnwnflavth pgymafltyd evkarlqkys tkpgsyifrl sctrlgqwai gyvtgdgnil
      301 qtiphnkplf qalidgsreg fylfpdgrsy npdltglcep tphdhikvtq eqyelycemg
      361 stfqlckica endkdvkiep cghlmctscl tawqesdgqg cpfcrceikg tepiivdpfd
      421 prdensrccs iidsfsmpml dldddddree slmmnrlasv rkcnerqnsp vtspgssplv
      481 qrrkplpdpl qiphlslppv pprldliqkg varspcaspt gspksspcmv rkqdkplpap
      541 ppplrdpppp pperpppipp dnrisrhlhh pesvpsrdqp mplegwcprd vfgtnqlvgc
      601 rigsdaspkp gltaisning rhnrissdpg fmrkhrrhel paegakifsn ghlvneeydv
      661 pprlspplpt asvvpsmkcp assanslsdk srdhpddddd deykipsshp vvlssqplhs
      721 hntkplarvc engqcagvmn gthsttsemk kskhpelgda ydaptvpvpl pparppptrd
      781 npkhssllnr tpsdydllvp plgedafdss ppslpppppp arhsmiehtk pagsgnrpss
      841 ghelflhsdp hfdlitghvp lpparrvtge nvktnrtsqd ydqlppssdg sqaparppkp
      901 lprrtapeih hrkayssdss menvdakiak lmgegysfee vkraleiaqn nvdvarsilr
      961 efvcfpppvs prlnl
//
LOCUS       XP_053942410             975 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase CBL-B isoform X1 [Cuculus canorus].
ACCESSION   XP_053942410
VERSION     XP_053942410.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086435.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..975
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..975
                     /product="E3 ubiquitin-protein ligase CBL-B isoform X1"
                     /calculated_mol_wt=109022
     Region          34..160
                     /region_name="Cbl_N"
                     /note="CBL proto-oncogene N-terminal domain 1; pfam02262"
                     /db_xref="CDD:426685"
     Region          164..247
                     /region_name="Cbl_N2"
                     /note="CBL proto-oncogene N-terminus, EF hand-like domain;
                     pfam02761"
                     /db_xref="CDD:460681"
     Region          241..337
                     /region_name="SH2_Cbl-b_TKB"
                     /note="Src homology 2 (SH2) domain found in the Cbl-b TKB
                     domain; cd09920"
                     /db_xref="CDD:198176"
     Site            order(259,279,281..284,289,301,303)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:198176"
     Site            order(304..307,320..322)
                     /site_type="other"
                     /note="hydrophobic binding pocket [polypeptide binding]"
                     /db_xref="CDD:198176"
     Region          344..419
                     /region_name="RING-HC_Cbl-b"
                     /note="RING finger, HC subclass, found in E3
                     ubiquitin-protein ligase Cbl-b and similar proteins;
                     cd16709"
                     /db_xref="CDD:438369"
     Region          <348..526
                     /region_name="HRD1"
                     /note="HRD ubiquitin ligase complex, ER membrane component
                     [Posttranslational modification, protein turnover,
                     chaperones]; COG5243"
                     /db_xref="CDD:227568"
     Site            order(355..356,359,383,402..405)
                     /site_type="other"
                     /note="ubiquitin binding site [polypeptide binding]"
                     /db_xref="CDD:438369"
     Site            order(359..361,367..370,389,392..393,396,402..403,405)
                     /site_type="other"
                     /note="E2 binding site [polypeptide binding]"
                     /db_xref="CDD:438369"
     Region          923..963
                     /region_name="UBA_Cbl-b"
                     /note="UBA domain found in E3 ubiquitin-protein ligase
                     Cbl-b and similar proteins; cd14392"
                     /db_xref="CDD:270575"
     Site            order(925..926,928..930,932..933,938,942)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270575"
     CDS             1..975
                     /gene="CBLB"
                     /coded_by="XM_054086435.1:17..2944"
                     /db_xref="GeneID:104056174"
ORIGIN      
        1 manslngrnp rkgrilgfid aiqdavgppk qaaadrrtve ktwklmdkvv rlcqnpklql
       61 knsppyildi lpdtyqhlrl ilskyddnqk laqlseneyf kiyidslmkk skrairlfke
      121 gkermyeeqs qdrrnltkls lifshmlaei kaifpngqfq gdnfritkad aadfwrkffg
      181 dktivpwkvf rqclhevhqi ssgleamalk stidltcndy isifefdift rlfqpwgsil
      241 rnwnflavth pgymafltyd evkarlqkys tkpgsyifrl sctrlgqwai gyvtgdgnil
      301 qtiphnkplf qalidgsreg fylfpdgrsy npdltglcep tphdhikvtq eqyelycemg
      361 stfqlckica endkdvkiep cghlmctscl tawqesdgqg cpfcrceikg tepiivdpfd
      421 prdensrccs iidsfsmpml dldddddree slmmnrlasv rkcnerqnsp vtspgssplv
      481 qrrkplpdpl qiphlslppv pprldliqkg varspcaspt gspksspcmv rkqdkplpap
      541 ppplrdpppp pperpppipp dnrisrhlhh pesvpsrdqp mplegwcprd vfgtnqlvgc
      601 rigsdaspkp gltaisning rhnrissdpg fmrkhrrhel paegakifsn ghlvneeydv
      661 pprlspplpt asvvpsmkcp assanslsdk srdhpddddd deykipsshp vvlssqplhs
      721 hntkplarvc engqcagvmn gthsttsemk kskhpelgda ydaptvpvpl pparppptrd
      781 npkhssllnr tpsdydllvp plgedafdss ppslpppppp arhsmiehtk pagsgnrpss
      841 ghelflhsdp hfdlitghvp lpparrvtge nvktnrtsqd ydqlppssdg sqaparppkp
      901 lprrtapeih hrkayssdss menvdakiak lmgegysfee vkraleiaqn nvdvarsilr
      961 efvcfpppvs prlnl
//
LOCUS       XP_053942418             930 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase CBL-B isoform X2 [Cuculus canorus].
ACCESSION   XP_053942418
VERSION     XP_053942418.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086443.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..930
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..930
                     /product="E3 ubiquitin-protein ligase CBL-B isoform X2"
                     /calculated_mol_wt=104181
     Region          34..160
                     /region_name="Cbl_N"
                     /note="CBL proto-oncogene N-terminal domain 1; pfam02262"
                     /db_xref="CDD:426685"
     Region          164..247
                     /region_name="Cbl_N2"
                     /note="CBL proto-oncogene N-terminus, EF hand-like domain;
                     pfam02761"
                     /db_xref="CDD:460681"
     Region          241..337
                     /region_name="SH2_Cbl-b_TKB"
                     /note="Src homology 2 (SH2) domain found in the Cbl-b TKB
                     domain; cd09920"
                     /db_xref="CDD:198176"
     Site            order(259,279,281..284,289,301,303)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:198176"
     Site            order(304..307,320..322)
                     /site_type="other"
                     /note="hydrophobic binding pocket [polypeptide binding]"
                     /db_xref="CDD:198176"
     Region          344..419
                     /region_name="RING-HC_Cbl-b"
                     /note="RING finger, HC subclass, found in E3
                     ubiquitin-protein ligase Cbl-b and similar proteins;
                     cd16709"
                     /db_xref="CDD:438369"
     Region          <348..526
                     /region_name="HRD1"
                     /note="HRD ubiquitin ligase complex, ER membrane component
                     [Posttranslational modification, protein turnover,
                     chaperones]; COG5243"
                     /db_xref="CDD:227568"
     Site            order(355..356,359,383,402..405)
                     /site_type="other"
                     /note="ubiquitin binding site [polypeptide binding]"
                     /db_xref="CDD:438369"
     Site            order(359..361,367..370,389,392..393,396,402..403,405)
                     /site_type="other"
                     /note="E2 binding site [polypeptide binding]"
                     /db_xref="CDD:438369"
     Region          878..918
                     /region_name="UBA_Cbl-b"
                     /note="UBA domain found in E3 ubiquitin-protein ligase
                     Cbl-b and similar proteins; cd14392"
                     /db_xref="CDD:270575"
     Site            order(880..881,883..885,887..888,893,897)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270575"
     CDS             1..930
                     /gene="CBLB"
                     /coded_by="XM_054086443.1:134..2926"
                     /db_xref="GeneID:104056174"
ORIGIN      
        1 manslngrnp rkgrilgfid aiqdavgppk qaaadrrtve ktwklmdkvv rlcqnpklql
       61 knsppyildi lpdtyqhlrl ilskyddnqk laqlseneyf kiyidslmkk skrairlfke
      121 gkermyeeqs qdrrnltkls lifshmlaei kaifpngqfq gdnfritkad aadfwrkffg
      181 dktivpwkvf rqclhevhqi ssgleamalk stidltcndy isifefdift rlfqpwgsil
      241 rnwnflavth pgymafltyd evkarlqkys tkpgsyifrl sctrlgqwai gyvtgdgnil
      301 qtiphnkplf qalidgsreg fylfpdgrsy npdltglcep tphdhikvtq eqyelycemg
      361 stfqlckica endkdvkiep cghlmctscl tawqesdgqg cpfcrceikg tepiivdpfd
      421 prdensrccs iidsfsmpml dldddddree slmmnrlasv rkcnerqnsp vtspgssplv
      481 qrrkplpdpl qiphlslppv pprldliqkg varspcaspt gspksspcmv rkqdkplpap
      541 ppplrdpppp pperpppipp dnrisrhlhh pesvpsrdqp mplegwcprd vfgtnqlvgc
      601 rigsdaspkp gltaisning rhnrissdpg fmrkhrrhel paegakifsn ghlvneeydv
      661 pprlspplpt asvvpsmkcp assanslsdk srdhpddddd deykipsshp vvlssqplhs
      721 hntkplarvc engqcagvmn gthsttsemk kskhpelged afdssppslp ppppparhsm
      781 iehtkpagsg nrpssghelf lhsdphfdli tghvplppar rvtgenvktn rtsqdydqlp
      841 pssdgsqapa rppkplprrt apeihhrkay ssdssmenvd akiaklmgeg ysfeevkral
      901 eiaqnnvdva rsilrefvcf pppvsprlnl
//
LOCUS       XP_053942424             975 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase CBL-B isoform X1 [Cuculus canorus].
ACCESSION   XP_053942424
VERSION     XP_053942424.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086449.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..975
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..975
                     /product="E3 ubiquitin-protein ligase CBL-B isoform X1"
                     /calculated_mol_wt=109022
     Region          34..160
                     /region_name="Cbl_N"
                     /note="CBL proto-oncogene N-terminal domain 1; pfam02262"
                     /db_xref="CDD:426685"
     Region          164..247
                     /region_name="Cbl_N2"
                     /note="CBL proto-oncogene N-terminus, EF hand-like domain;
                     pfam02761"
                     /db_xref="CDD:460681"
     Region          241..337
                     /region_name="SH2_Cbl-b_TKB"
                     /note="Src homology 2 (SH2) domain found in the Cbl-b TKB
                     domain; cd09920"
                     /db_xref="CDD:198176"
     Site            order(259,279,281..284,289,301,303)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:198176"
     Site            order(304..307,320..322)
                     /site_type="other"
                     /note="hydrophobic binding pocket [polypeptide binding]"
                     /db_xref="CDD:198176"
     Region          344..419
                     /region_name="RING-HC_Cbl-b"
                     /note="RING finger, HC subclass, found in E3
                     ubiquitin-protein ligase Cbl-b and similar proteins;
                     cd16709"
                     /db_xref="CDD:438369"
     Region          <348..526
                     /region_name="HRD1"
                     /note="HRD ubiquitin ligase complex, ER membrane component
                     [Posttranslational modification, protein turnover,
                     chaperones]; COG5243"
                     /db_xref="CDD:227568"
     Site            order(355..356,359,383,402..405)
                     /site_type="other"
                     /note="ubiquitin binding site [polypeptide binding]"
                     /db_xref="CDD:438369"
     Site            order(359..361,367..370,389,392..393,396,402..403,405)
                     /site_type="other"
                     /note="E2 binding site [polypeptide binding]"
                     /db_xref="CDD:438369"
     Region          923..963
                     /region_name="UBA_Cbl-b"
                     /note="UBA domain found in E3 ubiquitin-protein ligase
                     Cbl-b and similar proteins; cd14392"
                     /db_xref="CDD:270575"
     Site            order(925..926,928..930,932..933,938,942)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270575"
     CDS             1..975
                     /gene="CBLB"
                     /coded_by="XM_054086449.1:223..3150"
                     /db_xref="GeneID:104056174"
ORIGIN      
        1 manslngrnp rkgrilgfid aiqdavgppk qaaadrrtve ktwklmdkvv rlcqnpklql
       61 knsppyildi lpdtyqhlrl ilskyddnqk laqlseneyf kiyidslmkk skrairlfke
      121 gkermyeeqs qdrrnltkls lifshmlaei kaifpngqfq gdnfritkad aadfwrkffg
      181 dktivpwkvf rqclhevhqi ssgleamalk stidltcndy isifefdift rlfqpwgsil
      241 rnwnflavth pgymafltyd evkarlqkys tkpgsyifrl sctrlgqwai gyvtgdgnil
      301 qtiphnkplf qalidgsreg fylfpdgrsy npdltglcep tphdhikvtq eqyelycemg
      361 stfqlckica endkdvkiep cghlmctscl tawqesdgqg cpfcrceikg tepiivdpfd
      421 prdensrccs iidsfsmpml dldddddree slmmnrlasv rkcnerqnsp vtspgssplv
      481 qrrkplpdpl qiphlslppv pprldliqkg varspcaspt gspksspcmv rkqdkplpap
      541 ppplrdpppp pperpppipp dnrisrhlhh pesvpsrdqp mplegwcprd vfgtnqlvgc
      601 rigsdaspkp gltaisning rhnrissdpg fmrkhrrhel paegakifsn ghlvneeydv
      661 pprlspplpt asvvpsmkcp assanslsdk srdhpddddd deykipsshp vvlssqplhs
      721 hntkplarvc engqcagvmn gthsttsemk kskhpelgda ydaptvpvpl pparppptrd
      781 npkhssllnr tpsdydllvp plgedafdss ppslpppppp arhsmiehtk pagsgnrpss
      841 ghelflhsdp hfdlitghvp lpparrvtge nvktnrtsqd ydqlppssdg sqaparppkp
      901 lprrtapeih hrkayssdss menvdakiak lmgegysfee vkraleiaqn nvdvarsilr
      961 efvcfpppvs prlnl
//
LOCUS       XP_053942429             975 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase CBL-B isoform X1 [Cuculus canorus].
ACCESSION   XP_053942429
VERSION     XP_053942429.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086454.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..975
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..975
                     /product="E3 ubiquitin-protein ligase CBL-B isoform X1"
                     /calculated_mol_wt=109022
     Region          34..160
                     /region_name="Cbl_N"
                     /note="CBL proto-oncogene N-terminal domain 1; pfam02262"
                     /db_xref="CDD:426685"
     Region          164..247
                     /region_name="Cbl_N2"
                     /note="CBL proto-oncogene N-terminus, EF hand-like domain;
                     pfam02761"
                     /db_xref="CDD:460681"
     Region          241..337
                     /region_name="SH2_Cbl-b_TKB"
                     /note="Src homology 2 (SH2) domain found in the Cbl-b TKB
                     domain; cd09920"
                     /db_xref="CDD:198176"
     Site            order(259,279,281..284,289,301,303)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:198176"
     Site            order(304..307,320..322)
                     /site_type="other"
                     /note="hydrophobic binding pocket [polypeptide binding]"
                     /db_xref="CDD:198176"
     Region          344..419
                     /region_name="RING-HC_Cbl-b"
                     /note="RING finger, HC subclass, found in E3
                     ubiquitin-protein ligase Cbl-b and similar proteins;
                     cd16709"
                     /db_xref="CDD:438369"
     Region          <348..526
                     /region_name="HRD1"
                     /note="HRD ubiquitin ligase complex, ER membrane component
                     [Posttranslational modification, protein turnover,
                     chaperones]; COG5243"
                     /db_xref="CDD:227568"
     Site            order(355..356,359,383,402..405)
                     /site_type="other"
                     /note="ubiquitin binding site [polypeptide binding]"
                     /db_xref="CDD:438369"
     Site            order(359..361,367..370,389,392..393,396,402..403,405)
                     /site_type="other"
                     /note="E2 binding site [polypeptide binding]"
                     /db_xref="CDD:438369"
     Region          923..963
                     /region_name="UBA_Cbl-b"
                     /note="UBA domain found in E3 ubiquitin-protein ligase
                     Cbl-b and similar proteins; cd14392"
                     /db_xref="CDD:270575"
     Site            order(925..926,928..930,932..933,938,942)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270575"
     CDS             1..975
                     /gene="CBLB"
                     /coded_by="XM_054086454.1:133..3060"
                     /db_xref="GeneID:104056174"
ORIGIN      
        1 manslngrnp rkgrilgfid aiqdavgppk qaaadrrtve ktwklmdkvv rlcqnpklql
       61 knsppyildi lpdtyqhlrl ilskyddnqk laqlseneyf kiyidslmkk skrairlfke
      121 gkermyeeqs qdrrnltkls lifshmlaei kaifpngqfq gdnfritkad aadfwrkffg
      181 dktivpwkvf rqclhevhqi ssgleamalk stidltcndy isifefdift rlfqpwgsil
      241 rnwnflavth pgymafltyd evkarlqkys tkpgsyifrl sctrlgqwai gyvtgdgnil
      301 qtiphnkplf qalidgsreg fylfpdgrsy npdltglcep tphdhikvtq eqyelycemg
      361 stfqlckica endkdvkiep cghlmctscl tawqesdgqg cpfcrceikg tepiivdpfd
      421 prdensrccs iidsfsmpml dldddddree slmmnrlasv rkcnerqnsp vtspgssplv
      481 qrrkplpdpl qiphlslppv pprldliqkg varspcaspt gspksspcmv rkqdkplpap
      541 ppplrdpppp pperpppipp dnrisrhlhh pesvpsrdqp mplegwcprd vfgtnqlvgc
      601 rigsdaspkp gltaisning rhnrissdpg fmrkhrrhel paegakifsn ghlvneeydv
      661 pprlspplpt asvvpsmkcp assanslsdk srdhpddddd deykipsshp vvlssqplhs
      721 hntkplarvc engqcagvmn gthsttsemk kskhpelgda ydaptvpvpl pparppptrd
      781 npkhssllnr tpsdydllvp plgedafdss ppslpppppp arhsmiehtk pagsgnrpss
      841 ghelflhsdp hfdlitghvp lpparrvtge nvktnrtsqd ydqlppssdg sqaparppkp
      901 lprrtapeih hrkayssdss menvdakiak lmgegysfee vkraleiaqn nvdvarsilr
      961 efvcfpppvs prlnl
//
LOCUS       XP_053942445             546 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier family 22 member 15 [Cuculus canorus].
ACCESSION   XP_053942445
VERSION     XP_053942445.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086470.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..546
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..546
                     /product="solute carrier family 22 member 15"
                     /calculated_mol_wt=60108
     Region          71..470
                     /region_name="MFS_SLC22A15"
                     /note="Solute carrier family 22 member 15 of the Major
                     Facilitator Superfamily of transporters; cd17377"
                     /db_xref="CDD:340935"
     Site            order(94..95,98..99,102,126,176..177,179..181,184,200,
                     203..204,207,315,318..319,322..324,327,347,351,410..411,
                     415,419,435,438..439,442..443,446)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:340935"
     CDS             1..546
                     /gene="SLC22A15"
                     /coded_by="XM_054086470.1:57..1697"
                     /db_xref="GeneID:104055858"
ORIGIN      
        1 meveeafplv gqmgpyqvyl cvllavllql yvateailia lvgatppyhw dlqelsanqs
       61 hsnqsaseqr afgewlltan ssevhkhvhf srsftsivse wfligntsyk vsaassfyfs
      121 gvfigaisfg qlsdrfgrkk vyltgfaldi lfaiangfsp syeffaisrf lvglmnggms
      181 lvafvllnec vgtaywalag sigglffavg iaqyallgyy irswrtltiv vnlegtvvfl
      241 lslfipespr wlysqgrlne aedalyliak rnrkqkctfs lklpaertsr eagsfldlfr
      301 ykillgrtli mmftwfvcsl vyygltlnvg dlggsiyanl alsglieipa ypiciylinq
      361 kwfgrkrtls aflflgglac livmflpkkk dtgvfavvns hslsllgklt isaafnivyi
      421 ytselyptvi rnvgmgacsm fsrvggiiap fvpslksvqw slpyivfgat gllsgllsll
      481 lpetlnspll etisdlqvcs ywrlgdeams lqalhgsqsg dkdssagsgs edeefydade
      541 ethmik
//
LOCUS       XP_053942458             387 aa            linear   VRT 09-MAR-2023
DEFINITION  protein mab-21-like 3 [Cuculus canorus].
ACCESSION   XP_053942458
VERSION     XP_053942458.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086483.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..387
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..387
                     /product="protein mab-21-like 3"
                     /calculated_mol_wt=44932
     Region          82..273
                     /region_name="Mab-21"
                     /note="Mab-21 protein nucleotidyltransferase domain;
                     pfam03281"
                     /db_xref="CDD:460873"
     Region          280..376
                     /region_name="Mab-21_C"
                     /note="Mab-21 protein HhH/H2TH-like domain; pfam20266"
                     /db_xref="CDD:466416"
     CDS             1..387
                     /gene="MAB21L3"
                     /coded_by="XM_054086483.1:90..1253"
                     /db_xref="GeneID:104055811"
ORIGIN      
        1 mkpftdedve iyiqskvepr hyqvskavee vqkiiqqlta eisykatrfq aisnsgihne
       61 nikdqpalla kwsamlqgkr pfhpsiqvla psqflitvpl rglagyrerq vrhwryytvh
      121 gakllssvrd peelhqwlev eqfskslqqw hetdvniegd lvpakvlivf relveksivs
      181 cnlsskvtvl esfssvvrva vetsesqvev elvpaveipt cwpekarwpr clkrwpcqei
      241 vqrmkllgfd llarssyhwq lcfsraehil megldedggc rlkcfrvmrq mkedvwcagn
      301 kpvitayhlq tvlfwtceky prtkdwrcfp eaflrlvqkl hkcvsqhflk hyfvkntnll
      361 kyantsdldl vasklavfle npvfcld
//
LOCUS       XP_053942472            1764 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-tubulin complex component 6 isoform X1 [Cuculus canorus].
ACCESSION   XP_053942472
VERSION     XP_053942472.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086497.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1764
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1764
                     /product="gamma-tubulin complex component 6 isoform X1"
                     /calculated_mol_wt=199613
     Region          31..344
                     /region_name="GCP6_N"
                     /note="Gamma-tubulin complex component 6 N-terminus;
                     pfam19340"
                     /db_xref="CDD:466048"
     Region          355..656
                     /region_name="GCP_N_terminal"
                     /note="Gamma tubulin complex component N-terminal;
                     pfam17681"
                     /db_xref="CDD:465456"
     Region          631..>808
                     /region_name="TPH"
                     /note="Trichohyalin-plectin-homology domain; pfam13868"
                     /db_xref="CDD:464007"
     Region          <702..988
                     /region_name="PLN03229"
                     /note="acetyl-coenzyme A carboxylase carboxyl transferase
                     subunit alpha; Provisional"
                     /db_xref="CDD:178768"
     Region          1090..1238
                     /region_name="DUF4573"
                     /note="Domain of unknown function (DUF4573); pfam15140"
                     /db_xref="CDD:434493"
     Region          1441..1730
                     /region_name="GCP_C_terminal"
                     /note="Gamma tubulin complex component C-terminal;
                     pfam04130"
                     /db_xref="CDD:461187"
     CDS             1..1764
                     /gene="TUBGCP6"
                     /coded_by="XM_054086497.1:227..5521"
                     /db_xref="GeneID:104055280"
ORIGIN      
        1 mesitqlfgd lceahlaglp wkvhlgrrki skrrakqnlk kvaynalfin lfqdearqlr
       61 snvsrlpvkn kilmlsfdlr vgglgaqadr lenlveelet seclpftevd svldllvhla
      121 gtgppqlvpq kkdyfennky vgrnvkyqgy dyydvsvfea diqslitnee cqfndtiqkt
      181 lqimeaapgt glpaiglfsq nypagdkfek etrvslfgal vrsrtydmdi kldlppvpdn
      241 adlsglaikv pqsidqsede gfqsasnltp dsqsepsmtp dvdlwdavlt yepskrrcwe
      301 rigyppgkkd epylteagre afdrfyqlre gelqrfsntv lelpqlvllk epelvkdvln
      361 vligvvsatf slnqaaqafv ikegvyvsgt spetmhslls evaeygtyyt rlsrfslqpv
      421 ldssyskglv fqaftsglrk ylqyyracvl stpptlsllt isflfrklgr qlrylaelcg
      481 igtavlgisg gagasfptgv kllsylykea lnncsnehyp vllsllktsc epytrfiydw
      541 vysgvfrdvy gefmiqvned ylcfrdkhyw thgyvliske vedcvpvflk hiandvyicg
      601 ktinllklcc prhyicwsdi pvprisvsfs leelkeierd cavyvgrmer iaryssvske
      661 ekdlrmeiak qelivharet askvlkaitd qqisermald akkreqfqrl keqfakdqer
      721 rlaikqeeid ddfsyarelr erekrlkale eelgkkarqe lidhysklsd daarreqral
      781 wkiqrhklet arlkflledq krieemlekl pdgnyrqkld iipyklcqsa sdknpgvkdp
      841 hsqvssvkpl cssetvgrke sepgleyats adkalpvpel tnndadqlfq pkaagsessl
      901 qtsekahsll ysadsspesd vnmedfsskp qeeqpvsisi qgslldeafq ninsdlsens
      961 qvsenqpvlr galvgednap lhqqseydfe tvlrpsaawq ghvrvgenvf dveyrrprwn
     1021 ihghasdasi rvgeyvphvg iypprsspyg hssdshikis ytsegvssrp rwnvhghvsd
     1081 ahikigeyas evepsrprwn ihghaseani kigeyvsdva ptrprwnihg hasdtsikig
     1141 envsevvsar prwnihghas qshikigelv sdteplksrw slfghmsqss ieigkwapst
     1201 eddpvphrkt isgpssdstv qtllygdqls paegsrkeak vsgvkektlp hsqasdsvtv
     1261 fpdanikddk kestmeekqe vtadvvnkdi spdssqslea eepekaipqd tvpqetlfse
     1321 asvpktnaee aggegpqkke qsylkalsdq yciekyqdsy dlmselpvsh llhhviprsy
     1381 tfpvdpmvqs atdetavqls ellslpvlmk rsvtaplvsh vslvnkaivd yyfvelnvek
     1441 hfealrhfll medgefaqsl sdllfeklgs gqtpgellnp lvlnsilnka lqyslhgdtq
     1501 lasnlsfalk ylpevfkpna pdalsclelr ykvdwplniv iteccmnkyn kifsfllqlk
     1561 hmvwtlkdvw fhlkrtalvs rasnsvqfrq lqlykhemqh fvkviqgyva nqilhvtwce
     1621 fgnklssvgn leeihrthae ylnkaifrgl ltekaapvmn iihsifslil kfrsqlisqs
     1681 wsfdagkqma vhpnfglmqq syntfkyysh flfkgcpkmv skdqnqvfqd elewllpnst
     1741 gsqntsashl spyyeiygcf mdrd
//
LOCUS       XP_053942478            1764 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-tubulin complex component 6 isoform X1 [Cuculus canorus].
ACCESSION   XP_053942478
VERSION     XP_053942478.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086503.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1764
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1764
                     /product="gamma-tubulin complex component 6 isoform X1"
                     /calculated_mol_wt=199613
     Region          31..344
                     /region_name="GCP6_N"
                     /note="Gamma-tubulin complex component 6 N-terminus;
                     pfam19340"
                     /db_xref="CDD:466048"
     Region          355..656
                     /region_name="GCP_N_terminal"
                     /note="Gamma tubulin complex component N-terminal;
                     pfam17681"
                     /db_xref="CDD:465456"
     Region          631..>808
                     /region_name="TPH"
                     /note="Trichohyalin-plectin-homology domain; pfam13868"
                     /db_xref="CDD:464007"
     Region          <702..988
                     /region_name="PLN03229"
                     /note="acetyl-coenzyme A carboxylase carboxyl transferase
                     subunit alpha; Provisional"
                     /db_xref="CDD:178768"
     Region          1090..1238
                     /region_name="DUF4573"
                     /note="Domain of unknown function (DUF4573); pfam15140"
                     /db_xref="CDD:434493"
     Region          1441..1730
                     /region_name="GCP_C_terminal"
                     /note="Gamma tubulin complex component C-terminal;
                     pfam04130"
                     /db_xref="CDD:461187"
     CDS             1..1764
                     /gene="TUBGCP6"
                     /coded_by="XM_054086503.1:215..5509"
                     /db_xref="GeneID:104055280"
ORIGIN      
        1 mesitqlfgd lceahlaglp wkvhlgrrki skrrakqnlk kvaynalfin lfqdearqlr
       61 snvsrlpvkn kilmlsfdlr vgglgaqadr lenlveelet seclpftevd svldllvhla
      121 gtgppqlvpq kkdyfennky vgrnvkyqgy dyydvsvfea diqslitnee cqfndtiqkt
      181 lqimeaapgt glpaiglfsq nypagdkfek etrvslfgal vrsrtydmdi kldlppvpdn
      241 adlsglaikv pqsidqsede gfqsasnltp dsqsepsmtp dvdlwdavlt yepskrrcwe
      301 rigyppgkkd epylteagre afdrfyqlre gelqrfsntv lelpqlvllk epelvkdvln
      361 vligvvsatf slnqaaqafv ikegvyvsgt spetmhslls evaeygtyyt rlsrfslqpv
      421 ldssyskglv fqaftsglrk ylqyyracvl stpptlsllt isflfrklgr qlrylaelcg
      481 igtavlgisg gagasfptgv kllsylykea lnncsnehyp vllsllktsc epytrfiydw
      541 vysgvfrdvy gefmiqvned ylcfrdkhyw thgyvliske vedcvpvflk hiandvyicg
      601 ktinllklcc prhyicwsdi pvprisvsfs leelkeierd cavyvgrmer iaryssvske
      661 ekdlrmeiak qelivharet askvlkaitd qqisermald akkreqfqrl keqfakdqer
      721 rlaikqeeid ddfsyarelr erekrlkale eelgkkarqe lidhysklsd daarreqral
      781 wkiqrhklet arlkflledq krieemlekl pdgnyrqkld iipyklcqsa sdknpgvkdp
      841 hsqvssvkpl cssetvgrke sepgleyats adkalpvpel tnndadqlfq pkaagsessl
      901 qtsekahsll ysadsspesd vnmedfsskp qeeqpvsisi qgslldeafq ninsdlsens
      961 qvsenqpvlr galvgednap lhqqseydfe tvlrpsaawq ghvrvgenvf dveyrrprwn
     1021 ihghasdasi rvgeyvphvg iypprsspyg hssdshikis ytsegvssrp rwnvhghvsd
     1081 ahikigeyas evepsrprwn ihghaseani kigeyvsdva ptrprwnihg hasdtsikig
     1141 envsevvsar prwnihghas qshikigelv sdteplksrw slfghmsqss ieigkwapst
     1201 eddpvphrkt isgpssdstv qtllygdqls paegsrkeak vsgvkektlp hsqasdsvtv
     1261 fpdanikddk kestmeekqe vtadvvnkdi spdssqslea eepekaipqd tvpqetlfse
     1321 asvpktnaee aggegpqkke qsylkalsdq yciekyqdsy dlmselpvsh llhhviprsy
     1381 tfpvdpmvqs atdetavqls ellslpvlmk rsvtaplvsh vslvnkaivd yyfvelnvek
     1441 hfealrhfll medgefaqsl sdllfeklgs gqtpgellnp lvlnsilnka lqyslhgdtq
     1501 lasnlsfalk ylpevfkpna pdalsclelr ykvdwplniv iteccmnkyn kifsfllqlk
     1561 hmvwtlkdvw fhlkrtalvs rasnsvqfrq lqlykhemqh fvkviqgyva nqilhvtwce
     1621 fgnklssvgn leeihrthae ylnkaifrgl ltekaapvmn iihsifslil kfrsqlisqs
     1681 wsfdagkqma vhpnfglmqq syntfkyysh flfkgcpkmv skdqnqvfqd elewllpnst
     1741 gsqntsashl spyyeiygcf mdrd
//
LOCUS       XP_053942482            1744 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-tubulin complex component 6 isoform X2 [Cuculus canorus].
ACCESSION   XP_053942482
VERSION     XP_053942482.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086507.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1744
                     /product="gamma-tubulin complex component 6 isoform X2"
                     /calculated_mol_wt=197566
     Region          31..344
                     /region_name="GCP6_N"
                     /note="Gamma-tubulin complex component 6 N-terminus;
                     pfam19340"
                     /db_xref="CDD:466048"
     Region          355..656
                     /region_name="GCP_N_terminal"
                     /note="Gamma tubulin complex component N-terminal;
                     pfam17681"
                     /db_xref="CDD:465456"
     Region          631..>808
                     /region_name="TPH"
                     /note="Trichohyalin-plectin-homology domain; pfam13868"
                     /db_xref="CDD:464007"
     Region          <702..988
                     /region_name="PLN03229"
                     /note="acetyl-coenzyme A carboxylase carboxyl transferase
                     subunit alpha; Provisional"
                     /db_xref="CDD:178768"
     Region          1090..1238
                     /region_name="DUF4573"
                     /note="Domain of unknown function (DUF4573); pfam15140"
                     /db_xref="CDD:434493"
     Region          1441..1741
                     /region_name="GCP_C_terminal"
                     /note="Gamma tubulin complex component C-terminal;
                     pfam04130"
                     /db_xref="CDD:461187"
     CDS             1..1744
                     /gene="TUBGCP6"
                     /coded_by="XM_054086507.1:226..5460"
                     /db_xref="GeneID:104055280"
ORIGIN      
        1 mesitqlfgd lceahlaglp wkvhlgrrki skrrakqnlk kvaynalfin lfqdearqlr
       61 snvsrlpvkn kilmlsfdlr vgglgaqadr lenlveelet seclpftevd svldllvhla
      121 gtgppqlvpq kkdyfennky vgrnvkyqgy dyydvsvfea diqslitnee cqfndtiqkt
      181 lqimeaapgt glpaiglfsq nypagdkfek etrvslfgal vrsrtydmdi kldlppvpdn
      241 adlsglaikv pqsidqsede gfqsasnltp dsqsepsmtp dvdlwdavlt yepskrrcwe
      301 rigyppgkkd epylteagre afdrfyqlre gelqrfsntv lelpqlvllk epelvkdvln
      361 vligvvsatf slnqaaqafv ikegvyvsgt spetmhslls evaeygtyyt rlsrfslqpv
      421 ldssyskglv fqaftsglrk ylqyyracvl stpptlsllt isflfrklgr qlrylaelcg
      481 igtavlgisg gagasfptgv kllsylykea lnncsnehyp vllsllktsc epytrfiydw
      541 vysgvfrdvy gefmiqvned ylcfrdkhyw thgyvliske vedcvpvflk hiandvyicg
      601 ktinllklcc prhyicwsdi pvprisvsfs leelkeierd cavyvgrmer iaryssvske
      661 ekdlrmeiak qelivharet askvlkaitd qqisermald akkreqfqrl keqfakdqer
      721 rlaikqeeid ddfsyarelr erekrlkale eelgkkarqe lidhysklsd daarreqral
      781 wkiqrhklet arlkflledq krieemlekl pdgnyrqkld iipyklcqsa sdknpgvkdp
      841 hsqvssvkpl cssetvgrke sepgleyats adkalpvpel tnndadqlfq pkaagsessl
      901 qtsekahsll ysadsspesd vnmedfsskp qeeqpvsisi qgslldeafq ninsdlsens
      961 qvsenqpvlr galvgednap lhqqseydfe tvlrpsaawq ghvrvgenvf dveyrrprwn
     1021 ihghasdasi rvgeyvphvg iypprsspyg hssdshikis ytsegvssrp rwnvhghvsd
     1081 ahikigeyas evepsrprwn ihghaseani kigeyvsdva ptrprwnihg hasdtsikig
     1141 envsevvsar prwnihghas qshikigelv sdteplksrw slfghmsqss ieigkwapst
     1201 eddpvphrkt isgpssdstv qtllygdqls paegsrkeak vsgvkektlp hsqasdsvtv
     1261 fpdanikddk kestmeekqe vtadvvnkdi spdssqslea eepekaipqd tvpqetlfse
     1321 asvpktnaee aggegpqkke qsylkalsdq yciekyqdsy dlmselpvsh llhhviprsy
     1381 tfpvdpmvqs atdetavqls ellslpvlmk rsvtaplvsh vslvnkaivd yyfvelnvek
     1441 hfealrhfll medgefaqsl sdllfeklgs gqtpgellnp lvlnsilnka lqyslhgdtq
     1501 lasnlsfalk ylpevfkpna pdalsclelr ykvdwplniv iteccmnkyn kifsfllqlk
     1561 hmvwtlkdvw fhlkrtalvs rasnsvqfrq lqlykhemqh fvkviqgyva nqilhvtwce
     1621 fgnklssvgn leeihrthae ylnkaifrgl ltekaapvmn iihsifslil kfrsqlisqs
     1681 wsfdagkqma vhpnfglmqq syntfkyysh flfkvvtklv nrgyqphled fllrinfnny
     1741 ykdn
//
LOCUS       XP_053942493             721 aa            linear   VRT 09-MAR-2023
DEFINITION  polyamine deacetylase HDAC10 isoform X1 [Cuculus canorus].
ACCESSION   XP_053942493
VERSION     XP_053942493.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086518.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..721
                     /product="polyamine deacetylase HDAC10 isoform X1"
                     /calculated_mol_wt=79443
     Region          58..394
                     /region_name="HDAC10"
                     /note="Histone deacetylase 10; cd11683"
                     /db_xref="CDD:212546"
     Site            order(174..175,183..184,212,214,305,343)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:212546"
     Region          482..>627
                     /region_name="Arginase_HDAC"
                     /note="Arginase-like and histone-like hydrolases; cl17011"
                     /db_xref="CDD:450134"
     CDS             1..721
                     /gene="HDAC10"
                     /coded_by="XM_054086518.1:18..2183"
                     /db_xref="GeneID:104055293"
ORIGIN      
        1 mgrlgsgpgg vagagapetr vvrpglgrat aaealpaama sataliydee mtthkllwnd
       61 pvcdievper lsssyeqlkh yhlvercvrv paregseeei llvhslehle vakstqtmne
      121 eelkrvsgny dafffhpnty rcarlavgat lqlvdavmsg kvcngmalvr ppghhsqkna
      181 angfclfnnv aiaaeyaklk yglqrilivd wdvhhgqgtq yifeedpsvl yfswhryehq
      241 efwpslkesd ynavglgkgk gfninlpwnk vgmgnsdyla affhvllpma fefdpelvlv
      301 ssgydsgigd pegqmnatpe vfahlthflm qlangklcvi leggyhlksl sesvcmtvks
      361 llgdpvpqit gemapclsai esiqnvraah kpywkclmye dtsflqnlst klhlmkkdnp
      421 npsseheski tnndetieve kflelhmkni lfpvppirta mstdsegsah llpvpvhlvk
      481 emdktelktl vsgfyadlvk dsktllslgg mlavldktlk kevcngiaas ptssvavalr
      541 hsvrfgfqrv lcvfvgdmqi ipntedgrvl tiqicekeqs gkssskhyit lnwkedaegn
      601 dffsavlgfi lpvaysyqpd ltvvavgpnr slgisgisll fallqalaes rifaviedtd
      661 tnlmqsvaka lagastphfg vyvpptqekv nkikilreqf qqewkmlqcg gkllvfifss
      721 y
//
LOCUS       XP_053942503             718 aa            linear   VRT 09-MAR-2023
DEFINITION  polyamine deacetylase HDAC10 isoform X2 [Cuculus canorus].
ACCESSION   XP_053942503
VERSION     XP_053942503.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086528.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..718
                     /product="polyamine deacetylase HDAC10 isoform X2"
                     /calculated_mol_wt=79012
     Region          58..394
                     /region_name="HDAC10"
                     /note="Histone deacetylase 10; cd11683"
                     /db_xref="CDD:212546"
     Site            order(174..175,183..184,212,214,305,343)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:212546"
     Region          482..>627
                     /region_name="Arginase_HDAC"
                     /note="Arginase-like and histone-like hydrolases; cl17011"
                     /db_xref="CDD:450134"
     CDS             1..718
                     /gene="HDAC10"
                     /coded_by="XM_054086528.1:18..2174"
                     /db_xref="GeneID:104055293"
ORIGIN      
        1 mgrlgsgpgg vagagapetr vvrpglgrat aaealpaama sataliydee mtthkllwnd
       61 pvcdievper lsssyeqlkh yhlvercvrv paregseeei llvhslehle vakstqtmne
      121 eelkrvsgny dafffhpnty rcarlavgat lqlvdavmsg kvcngmalvr ppghhsqkna
      181 angfclfnnv aiaaeyaklk yglqrilivd wdvhhgqgtq yifeedpsvl yfswhryehq
      241 efwpslkesd ynavglgkgk gfninlpwnk vgmgnsdyla affhvllpma fefdpelvlv
      301 ssgydsgigd pegqmnatpe vfahlthflm qlangklcvi leggyhlksl sesvcmtvks
      361 llgdpvpqit gemapclsai esiqnvraah kpywkclmye dtsflqnlst klhlmkkdnp
      421 npsseheski tnndetieve kflelhmkni lfpvppirta mstdsegsah llpvpvhlvk
      481 emdktelktl vsgfyadlvk dsktllslgg mlavldktlk kevcngiaas ptssvavalr
      541 hsvrfgfqrv lcvfvgdmqi ipntedgrvl tiqicekeqs gkssskhyit lnwkedaegn
      601 dffsavlgfi lpvaysyqpd ltvvavgpnr slgisgisll fallqalaes rifaviedtd
      661 tnlmqsvaka lagastphfg vyvpptqekv nkikilreqf qqewkmlqcg vkdgiptn
//
LOCUS       XP_053942513             681 aa            linear   VRT 09-MAR-2023
DEFINITION  polyamine deacetylase HDAC10 isoform X3 [Cuculus canorus].
ACCESSION   XP_053942513
VERSION     XP_053942513.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086538.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..681
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..681
                     /product="polyamine deacetylase HDAC10 isoform X3"
                     /calculated_mol_wt=74943
     Region          58..394
                     /region_name="HDAC10"
                     /note="Histone deacetylase 10; cd11683"
                     /db_xref="CDD:212546"
     Site            order(174..175,183..184,212,214,305,343)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:212546"
     Region          482..>627
                     /region_name="Arginase_HDAC"
                     /note="Arginase-like and histone-like hydrolases; cl17011"
                     /db_xref="CDD:450134"
     CDS             1..681
                     /gene="HDAC10"
                     /coded_by="XM_054086538.1:18..2063"
                     /db_xref="GeneID:104055293"
ORIGIN      
        1 mgrlgsgpgg vagagapetr vvrpglgrat aaealpaama sataliydee mtthkllwnd
       61 pvcdievper lsssyeqlkh yhlvercvrv paregseeei llvhslehle vakstqtmne
      121 eelkrvsgny dafffhpnty rcarlavgat lqlvdavmsg kvcngmalvr ppghhsqkna
      181 angfclfnnv aiaaeyaklk yglqrilivd wdvhhgqgtq yifeedpsvl yfswhryehq
      241 efwpslkesd ynavglgkgk gfninlpwnk vgmgnsdyla affhvllpma fefdpelvlv
      301 ssgydsgigd pegqmnatpe vfahlthflm qlangklcvi leggyhlksl sesvcmtvks
      361 llgdpvpqit gemapclsai esiqnvraah kpywkclmye dtsflqnlst klhlmkkdnp
      421 npsseheski tnndetieve kflelhmkni lfpvppirta mstdsegsah llpvpvhlvk
      481 emdktelktl vsgfyadlvk dsktllslgg mlavldktlk kevcngiaas ptssvavalr
      541 hsvrfgfqrv lcvfvgdmqi ipntedgrvl tiqicekeqs gkssskhyit lnwkedaegn
      601 dffsavlgfi lpvaysyqpd ltvvavgpnr slgisgisll fallqalaes rifavievah
      661 islwpenkig hrhvpscrqp a
//
LOCUS       XP_053942525             637 aa            linear   VRT 09-MAR-2023
DEFINITION  protein adenylyltransferase SelO, mitochondrial [Cuculus canorus].
ACCESSION   XP_053942525
VERSION     XP_053942525.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086550.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..637
                     /product="protein adenylyltransferase SelO, mitochondrial"
                     /calculated_mol_wt=71576
     Region          35..637
                     /region_name="SelO"
                     /note="Protein adenylyltransferase (AMPylase) SelO/YdiU
                     (selenoprotein O) [Posttranslational modification, protein
                     turnover, chaperones]; COG0397"
                     /db_xref="CDD:440166"
     CDS             1..637
                     /gene="SELENOO"
                     /coded_by="XM_054086550.1:20..1933"
                     /db_xref="GeneID:104055279"
ORIGIN      
        1 maagarwlga lrfdnlalra lpveaaeegg gprpvpgacf crarpaplrr prlvamslpa
       61 lallglpepr gdaeeaeael yfsgnrlleg sepaahcycg hqfgsfagql gdgaalylge
      121 vlgaggrrwe iqlkgagvtp fsrqadgrkv lrssireflc seamfhlgip ttragtcvts
      181 dstvirdify dgnpksekct vvlriastfl rfgsfeifkp pdeytgrkgp svnrndirir
      241 mldyvigtfy peiqeaysdn tiqrnaaffk eitkrtarlv aewqcvgfch gvlntdnmsi
      301 vgltidygpf gfmdrydpeh icnasdntgr yaynkqpeic kwnlgklaea lvpelpleis
      361 eliveeeyda efekhylqkm rkklgliqle leedsklvse lletmhlsgg dftnifylls
      421 sfsvdfdpsr ledyleklts qcasleelkv afkpqmdprq lsmmlmlaqs npqlfaligt
      481 kaninkeler ieqfsklqql taddllsrnk rhwkewleky rvrlqkeves lsnadtwntd
      541 rvkvmnsnnp kyilrnyiaq naieaaengd ysevrnvlkl lenpfqeaed frevkedaee
      601 egatataaac vqetrsrlpy cskpplwase lsvtuss
//
LOCUS       XP_009555334             367 aa            linear   VRT 09-MAR-2023
DEFINITION  G-protein coupled receptor 15 [Cuculus canorus].
ACCESSION   XP_009555334
VERSION     XP_009555334.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557039.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..367
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..367
                     /product="G-protein coupled receptor 15"
                     /calculated_mol_wt=41895
     Region          41..320
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          42..66
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320322"
     Region          75..96
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320322"
     Region          113..135
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320322"
     Region          158..174
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320322"
     Region          199..222
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320322"
     Region          246..268
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320322"
     Region          288..313
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320322"
     CDS             1..367
                     /gene="GPR15"
                     /coded_by="XM_009557039.2:19..1122"
                     /db_xref="GeneID:104055852"
ORIGIN      
        1 mrtawpemel telspvttvt fnydyyddnc hyqhlqhmst flpvlytavf lvgivgnsil
       61 ivalvfkrrv qrlidvfiin laasdfifli tlpfwvdnea sdgnwrvgsf lckassyvis
      121 vnmyssilll tcmsadryla imhpsvarqv rtrsysiglc iciwllsfcl gmptllsrel
      181 kkqygktyct dktvtetkqv mslmllilaf ffpllgiltf ycsitrrlcv hyqragkhdk
      241 klrksikivf ivvaafvisw vpfnlfklma illgllkqsd cftdmvaqlg mkvsspfafa
      301 nscanpfiyy cfdnyirram lrclcprvkt sisnsnsdtl dtrlsqslsn fvageyatrk
      361 rkrsvsf
//
LOCUS       XP_053942644             250 aa            linear   VRT 09-MAR-2023
DEFINITION  claudin domain-containing protein 1 [Cuculus canorus].
ACCESSION   XP_053942644
VERSION     XP_053942644.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086669.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..250
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..250
                     /product="claudin domain-containing protein 1"
                     /calculated_mol_wt=27766
     Region          17..231
                     /region_name="PMP22_Claudin"
                     /note="PMP-22/EMP/MP20/Claudin family; cl21598"
                     /db_xref="CDD:473919"
     CDS             1..250
                     /gene="CLDND1"
                     /coded_by="XM_054086669.1:259..1011"
                     /db_xref="GeneID:104055792"
ORIGIN      
        1 mdnrfatalv iacvlslist iymaasigtd fwyeyhtlsp aeniseagrs iweefvseea
       61 dektytealf qcngtvglwr rcitvpknsh wysppetdmt tncisfslsd qfmekyvepg
      121 nhnsgtdlnr tylwrlqfll pfvslglmcf galiglcaca crslypaiat gvlhflaglc
      181 tlglvgcyva giellhkklp lpndvrgefg wsfclacvsa plqfmaaalf iwaartnrke
      241 ftllkayrva
//
LOCUS       XP_053942652             250 aa            linear   VRT 09-MAR-2023
DEFINITION  claudin domain-containing protein 1 [Cuculus canorus].
ACCESSION   XP_053942652
VERSION     XP_053942652.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086677.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..250
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..250
                     /product="claudin domain-containing protein 1"
                     /calculated_mol_wt=27766
     Region          17..231
                     /region_name="PMP22_Claudin"
                     /note="PMP-22/EMP/MP20/Claudin family; cl21598"
                     /db_xref="CDD:473919"
     CDS             1..250
                     /gene="CLDND1"
                     /coded_by="XM_054086677.1:237..989"
                     /db_xref="GeneID:104055792"
ORIGIN      
        1 mdnrfatalv iacvlslist iymaasigtd fwyeyhtlsp aeniseagrs iweefvseea
       61 dektytealf qcngtvglwr rcitvpknsh wysppetdmt tncisfslsd qfmekyvepg
      121 nhnsgtdlnr tylwrlqfll pfvslglmcf galiglcaca crslypaiat gvlhflaglc
      181 tlglvgcyva giellhkklp lpndvrgefg wsfclacvsa plqfmaaalf iwaartnrke
      241 ftllkayrva
//
LOCUS       XP_053942662             250 aa            linear   VRT 09-MAR-2023
DEFINITION  claudin domain-containing protein 1 [Cuculus canorus].
ACCESSION   XP_053942662
VERSION     XP_053942662.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086687.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..250
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..250
                     /product="claudin domain-containing protein 1"
                     /calculated_mol_wt=27766
     Region          17..231
                     /region_name="PMP22_Claudin"
                     /note="PMP-22/EMP/MP20/Claudin family; cl21598"
                     /db_xref="CDD:473919"
     CDS             1..250
                     /gene="CLDND1"
                     /coded_by="XM_054086687.1:269..1021"
                     /db_xref="GeneID:104055792"
ORIGIN      
        1 mdnrfatalv iacvlslist iymaasigtd fwyeyhtlsp aeniseagrs iweefvseea
       61 dektytealf qcngtvglwr rcitvpknsh wysppetdmt tncisfslsd qfmekyvepg
      121 nhnsgtdlnr tylwrlqfll pfvslglmcf galiglcaca crslypaiat gvlhflaglc
      181 tlglvgcyva giellhkklp lpndvrgefg wsfclacvsa plqfmaaalf iwaartnrke
      241 ftllkayrva
//
LOCUS       XP_053942670             250 aa            linear   VRT 09-MAR-2023
DEFINITION  claudin domain-containing protein 1 [Cuculus canorus].
ACCESSION   XP_053942670
VERSION     XP_053942670.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086695.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..250
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..250
                     /product="claudin domain-containing protein 1"
                     /calculated_mol_wt=27766
     Region          17..231
                     /region_name="PMP22_Claudin"
                     /note="PMP-22/EMP/MP20/Claudin family; cl21598"
                     /db_xref="CDD:473919"
     CDS             1..250
                     /gene="CLDND1"
                     /coded_by="XM_054086695.1:218..970"
                     /db_xref="GeneID:104055792"
ORIGIN      
        1 mdnrfatalv iacvlslist iymaasigtd fwyeyhtlsp aeniseagrs iweefvseea
       61 dektytealf qcngtvglwr rcitvpknsh wysppetdmt tncisfslsd qfmekyvepg
      121 nhnsgtdlnr tylwrlqfll pfvslglmcf galiglcaca crslypaiat gvlhflaglc
      181 tlglvgcyva giellhkklp lpndvrgefg wsfclacvsa plqfmaaalf iwaartnrke
      241 ftllkayrva
//
LOCUS       XP_053942682             343 aa            linear   VRT 09-MAR-2023
DEFINITION  YEATS domain-containing protein 4 [Cuculus canorus].
ACCESSION   XP_053942682
VERSION     XP_053942682.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086707.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..343
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..343
                     /product="YEATS domain-containing protein 4"
                     /calculated_mol_wt=38473
     Region          135..271
                     /region_name="YEATS_GAS41_like"
                     /note="YEATS domain found in YEATS domain-containing
                     protein 4 and similar proteins; cd16909"
                     /db_xref="CDD:341128"
     Region          <285..>336
                     /region_name="PRK03918"
                     /note="DNA double-strand break repair ATPase Rad50"
                     /db_xref="CDD:235175"
     CDS             1..343
                     /gene="YEATS4"
                     /coded_by="XM_054086707.1:1791..2822"
                     /db_xref="GeneID:104061302"
ORIGIN      
        1 mtsrpssvat aplslvssad slrvhsisls lslmkilnst gpsadpcgtp pvtalhldlr
       61 ptaptrppar syadtltpar rkpeagsggc grrrggarrw rrsrgagggr rpprgnmfkr
      121 maefgpdsgg rvkgvtivkp ivygnvaryf gkkreedght hqwtvyvkpy rnedmsayvk
      181 kiqfklhesy gnplrvvtkp pyeitetgwg efeiiikiff idpnerpvtl yhllklfqsd
      241 tnailgkktv vsefydemif qdptammqql lttsrqltlg aykhetefad levktrekle
      301 aakkktsfei aelkerlkas retinclkne irkleeddqs kdm
//
LOCUS       XP_053942694            2191 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent T-type calcium channel subunit alpha-1I isoform
            X1 [Cuculus canorus].
ACCESSION   XP_053942694
VERSION     XP_053942694.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086719.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2191
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2191
                     /product="voltage-dependent T-type calcium channel subunit
                     alpha-1I isoform X1"
                     /calculated_mol_wt=245195
     Region          93..424
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          608..835
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1119..1391
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1436..1691
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..2191
                     /gene="CACNA1I"
                     /coded_by="XM_054086719.1:500..7075"
                     /db_xref="GeneID:104055539"
ORIGIN      
        1 maeyvsqpss twppgpqpph asticplepv dlgvseqqtp peqppsspel gededvtspt
       61 dpdvpypdla pvvffclkqt tsprnwcikm vcnpwfecvs mmvillncvt lgmyqpcedm
      121 dclsdrckil qvfddfifif famemvlkmv algifgkkcy lgdtwnrldf fivmagmvey
      181 sldlqninls airtvrvlrp lkainrvpsm rilvnllldt lpmlgnvlll cffvffifgi
      241 igvqlwagll rnrcfmeenf tiqgdivlpp yyqpeeddem pficslsgdn gimgcheipp
      301 lkergheccl dkddyyyyns vrqefnisgm cvnwnqyynv crtgnanphk gainfdnigy
      361 awivifqvit legwveimyy vmdahsfynf iyfilliivg sffminlclv viatqfsetk
      421 qrehqlmqeq rarylssstv asymepgdcy eeifqyichi vrkakrrtlg lynsiqsrrq
      481 ghvepsnakr gmsrkdqrhy rlcqqhnsld cpsqglvqpi avtttsdptn cprchkaghe
      541 asrrlsvlds adsdqedrga seeegegsre dqgastggke eveeggrlkl csemwrevra
      601 klrgivdsky fnrgimiail vntismgieh heqpeeltni leisnvvfts mfalemilkl
      661 aafglfdylr npynifdsii viisiweiig qadgglsvlr tfrllrvlkl vrfmpalrrq
      721 lvvlmktmdn vatfcmllml fififsilgm hifgckfslr tdtgdtvpdr knfdsllwai
      781 vtvfqiltqe dwnvvlyngm astspwasly fvalmtfgny vlfnllvail vegfqaegda
      841 nrsysdedqs ssnmedldqc qevqegsdpk lcaipvtpng hldpslpssn psvaaggvtn
      901 ssrnslqpdq irvavgsrks svmslgrmty dqrslsssrs shygawgrsg awssrrsswn
      961 tlarghslkh kppsaehesl lsgerhraad gepdgagraf hhrrtlsldn kgscdllela
     1021 svpsshrvtr klgaatgvse hqdcngkmps iakeifpkmd nrkergedde eidyslcfri
     1081 rkmmevykpd wcelredwsi ylfspqnrfr llcqtiiahk lfdyvvlafi flncitiale
     1141 rpqiehrste rifltvsnyi ftaifvaemt lkvvslglyf gdqaylrssw nildgflvfv
     1201 slidivvsva saggakilgv lrvlrllrtl rplrvisrap glklvvetli sslkpigniv
     1261 liccaffiif gilgvqlfkg kfyhclgvdi rnitnrsdcm aanykwvhhk ynfdnlgqal
     1321 mslfvlaskd gwvnimyngl davavdqqpv tnnnpwmlly fisfllivsf fvlnmfvgvv
     1381 venfhkcrqh qeaeearrre ekrlrrlekk rrkaqrlpyy atycplrlli hsvctshyld
     1441 ifitfiicln vvtmslehyn qpvsletalk ycnylfttvf vleavlklva fglrrffkdr
     1501 wnqldlaivl lsvmgitlee ieinaalpin ptiirimrvl riarvlkllk matgmralld
     1561 tvvqalpqvg nlgllfmllf fiyaalgvel fgklvcnden pcegmsrhat fenfgmaflt
     1621 lfqvstgdnw ngimkdtlrd cshddrscls nlqfisplyf vsfvltaqfv linvvvavlm
     1681 khlddsnkea qedaemdaei eleiahglcs rksgssnsrq gkgagtgggs grtdpegrlc
     1741 trcyspaqen lwldsvslii kdsfdgelmi idnlsgsvfh hysspamcek cnhdkqevql
     1801 aemealslns dksssillgd esdnrstsql spkemkqdgq esadsngegd lgecllpmsn
     1861 vdsstnpnsy lcemektpfn svqswlqhes tkappspfsp gascpllpvp aeffhpaisa
     1921 tqtgpekvsc prnlpkislq gswaslrsps vncsllqqap esdtsldsrs sssagslqtt
     1981 ledslnlsds pqctldlpva lcpmpasdsq rplgvplspa srrrslrgrg lfslqsirrh
     2041 qrshssggst spgcthhdsm dpsdeegvgs slrgggnnse psetlsslsl tslfsppppg
     2101 ltlvkkcsst sslhaspspr rptahhakpf ytvdprgfls mpswvtdfck dtpspregee
     2161 pdgpgrlgtg dcgsplpsel elgdgvskrn r
//
LOCUS       XP_053942701            2191 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent T-type calcium channel subunit alpha-1I isoform
            X1 [Cuculus canorus].
ACCESSION   XP_053942701
VERSION     XP_053942701.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086726.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2191
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2191
                     /product="voltage-dependent T-type calcium channel subunit
                     alpha-1I isoform X1"
                     /calculated_mol_wt=245195
     Region          93..424
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          608..835
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1119..1391
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1436..1691
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..2191
                     /gene="CACNA1I"
                     /coded_by="XM_054086726.1:481..7056"
                     /db_xref="GeneID:104055539"
ORIGIN      
        1 maeyvsqpss twppgpqpph asticplepv dlgvseqqtp peqppsspel gededvtspt
       61 dpdvpypdla pvvffclkqt tsprnwcikm vcnpwfecvs mmvillncvt lgmyqpcedm
      121 dclsdrckil qvfddfifif famemvlkmv algifgkkcy lgdtwnrldf fivmagmvey
      181 sldlqninls airtvrvlrp lkainrvpsm rilvnllldt lpmlgnvlll cffvffifgi
      241 igvqlwagll rnrcfmeenf tiqgdivlpp yyqpeeddem pficslsgdn gimgcheipp
      301 lkergheccl dkddyyyyns vrqefnisgm cvnwnqyynv crtgnanphk gainfdnigy
      361 awivifqvit legwveimyy vmdahsfynf iyfilliivg sffminlclv viatqfsetk
      421 qrehqlmqeq rarylssstv asymepgdcy eeifqyichi vrkakrrtlg lynsiqsrrq
      481 ghvepsnakr gmsrkdqrhy rlcqqhnsld cpsqglvqpi avtttsdptn cprchkaghe
      541 asrrlsvlds adsdqedrga seeegegsre dqgastggke eveeggrlkl csemwrevra
      601 klrgivdsky fnrgimiail vntismgieh heqpeeltni leisnvvfts mfalemilkl
      661 aafglfdylr npynifdsii viisiweiig qadgglsvlr tfrllrvlkl vrfmpalrrq
      721 lvvlmktmdn vatfcmllml fififsilgm hifgckfslr tdtgdtvpdr knfdsllwai
      781 vtvfqiltqe dwnvvlyngm astspwasly fvalmtfgny vlfnllvail vegfqaegda
      841 nrsysdedqs ssnmedldqc qevqegsdpk lcaipvtpng hldpslpssn psvaaggvtn
      901 ssrnslqpdq irvavgsrks svmslgrmty dqrslsssrs shygawgrsg awssrrsswn
      961 tlarghslkh kppsaehesl lsgerhraad gepdgagraf hhrrtlsldn kgscdllela
     1021 svpsshrvtr klgaatgvse hqdcngkmps iakeifpkmd nrkergedde eidyslcfri
     1081 rkmmevykpd wcelredwsi ylfspqnrfr llcqtiiahk lfdyvvlafi flncitiale
     1141 rpqiehrste rifltvsnyi ftaifvaemt lkvvslglyf gdqaylrssw nildgflvfv
     1201 slidivvsva saggakilgv lrvlrllrtl rplrvisrap glklvvetli sslkpigniv
     1261 liccaffiif gilgvqlfkg kfyhclgvdi rnitnrsdcm aanykwvhhk ynfdnlgqal
     1321 mslfvlaskd gwvnimyngl davavdqqpv tnnnpwmlly fisfllivsf fvlnmfvgvv
     1381 venfhkcrqh qeaeearrre ekrlrrlekk rrkaqrlpyy atycplrlli hsvctshyld
     1441 ifitfiicln vvtmslehyn qpvsletalk ycnylfttvf vleavlklva fglrrffkdr
     1501 wnqldlaivl lsvmgitlee ieinaalpin ptiirimrvl riarvlkllk matgmralld
     1561 tvvqalpqvg nlgllfmllf fiyaalgvel fgklvcnden pcegmsrhat fenfgmaflt
     1621 lfqvstgdnw ngimkdtlrd cshddrscls nlqfisplyf vsfvltaqfv linvvvavlm
     1681 khlddsnkea qedaemdaei eleiahglcs rksgssnsrq gkgagtgggs grtdpegrlc
     1741 trcyspaqen lwldsvslii kdsfdgelmi idnlsgsvfh hysspamcek cnhdkqevql
     1801 aemealslns dksssillgd esdnrstsql spkemkqdgq esadsngegd lgecllpmsn
     1861 vdsstnpnsy lcemektpfn svqswlqhes tkappspfsp gascpllpvp aeffhpaisa
     1921 tqtgpekvsc prnlpkislq gswaslrsps vncsllqqap esdtsldsrs sssagslqtt
     1981 ledslnlsds pqctldlpva lcpmpasdsq rplgvplspa srrrslrgrg lfslqsirrh
     2041 qrshssggst spgcthhdsm dpsdeegvgs slrgggnnse psetlsslsl tslfsppppg
     2101 ltlvkkcsst sslhaspspr rptahhakpf ytvdprgfls mpswvtdfck dtpspregee
     2161 pdgpgrlgtg dcgsplpsel elgdgvskrn r
//
LOCUS       XP_053942710            2190 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent T-type calcium channel subunit alpha-1I isoform
            X2 [Cuculus canorus].
ACCESSION   XP_053942710
VERSION     XP_053942710.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086735.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2190
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2190
                     /product="voltage-dependent T-type calcium channel subunit
                     alpha-1I isoform X2"
                     /calculated_mol_wt=245067
     Region          93..424
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          608..835
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1119..1391
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1436..1691
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..2190
                     /gene="CACNA1I"
                     /coded_by="XM_054086735.1:639..7211"
                     /db_xref="GeneID:104055539"
ORIGIN      
        1 maeyvsqpss twppgpqpph asticplepv dlgvseqqtp peqppsspel gededvtspt
       61 dpdvpypdla pvvffclkqt tsprnwcikm vcnpwfecvs mmvillncvt lgmyqpcedm
      121 dclsdrckil qvfddfifif famemvlkmv algifgkkcy lgdtwnrldf fivmagmvey
      181 sldlqninls airtvrvlrp lkainrvpsm rilvnllldt lpmlgnvlll cffvffifgi
      241 igvqlwagll rnrcfmeenf tiqgdivlpp yyqpeeddem pficslsgdn gimgcheipp
      301 lkergheccl dkddyyyyns vrqefnisgm cvnwnqyynv crtgnanphk gainfdnigy
      361 awivifqvit legwveimyy vmdahsfynf iyfilliivg sffminlclv viatqfsetk
      421 qrehqlmqeq rarylssstv asymepgdcy eeifqyichi vrkakrrtlg lynsiqsrrq
      481 ghvepsnakr gmsrkdqrhy rlcqqhnsld cpsqglvqpi avtttsdptn cprchkaghe
      541 asrrlsvlds adsdqedrga seeegegsre dqgastggke eveeggrlkl csemwrevra
      601 klrgivdsky fnrgimiail vntismgieh heqpeeltni leisnvvfts mfalemilkl
      661 aafglfdylr npynifdsii viisiweiig qadgglsvlr tfrllrvlkl vrfmpalrrq
      721 lvvlmktmdn vatfcmllml fififsilgm hifgckfslr tdtgdtvpdr knfdsllwai
      781 vtvfqiltqe dwnvvlyngm astspwasly fvalmtfgny vlfnllvail vegfqaegda
      841 nrsysdedqs ssnmedldqc qevqegsdpk lcaipvtpng hldpslpssn psvaaggvtn
      901 ssrnslqpdq irvavgsrks svmslgrmty dqrslsssrs shygawgrsg awssrrsswn
      961 tlarghslkh kppsaehesl lsgerhraad gepdgagraf hhrrtlsldn kgscdllela
     1021 svpsshrvtr klgaatgvse hqdcngkmps iakeifpkmd nrkergedde eidyslcfri
     1081 rkmmevykpd wcelredwsi ylfspqnrfr llcqtiiahk lfdyvvlafi flncitiale
     1141 rpqiehrste rifltvsnyi ftaifvaemt lkvvslglyf gdqaylrssw nildgflvfv
     1201 slidivvsva saggakilgv lrvlrllrtl rplrvisrap glklvvetli sslkpigniv
     1261 liccaffiif gilgvqlfkg kfyhclgvdi rnitnrsdcm aanykwvhhk ynfdnlgqal
     1321 mslfvlaskd gwvnimyngl davavdqqpv tnnnpwmlly fisfllivsf fvlnmfvgvv
     1381 venfhkcrqh qeaeearrre ekrlrrlekk rrkaqrlpyy atycplrlli hsvctshyld
     1441 ifitfiicln vvtmslehyn qpvsletalk ycnylfttvf vleavlklva fglrrffkdr
     1501 wnqldlaivl lsvmgitlee ieinaalpin ptiirimrvl riarvlkllk matgmralld
     1561 tvvqalpqvg nlgllfmllf fiyaalgvel fgklvcnden pcegmsrhat fenfgmaflt
     1621 lfqvstgdnw ngimkdtlrd cshddrscls nlqfisplyf vsfvltaqfv linvvvavlm
     1681 khlddsnkea qedaemdaei eleiahglcs rksgssnsrq gkgagtgggs grtdpegrlc
     1741 trcyspaqen lwldsvslii kdsfdgelmi idnlsgsvfh hysspamcek cnhdkqevql
     1801 aemealslns dksssillgd esdnrstsql spkemkdgqe sadsngegdl gecllpmsnv
     1861 dsstnpnsyl cemektpfns vqswlqhest kappspfspg ascpllpvpa effhpaisat
     1921 qtgpekvscp rnlpkislqg swaslrspsv ncsllqqape sdtsldsrss ssagslqttl
     1981 edslnlsdsp qctldlpval cpmpasdsqr plgvplspas rrrslrgrgl fslqsirrhq
     2041 rshssggsts pgcthhdsmd psdeegvgss lrgggnnsep setlsslslt slfsppppgl
     2101 tlvkkcssts slhaspsprr ptahhakpfy tvdprgflsm pswvtdfckd tpspregeep
     2161 dgpgrlgtgd cgsplpsele lgdgvskrnr
//
LOCUS       XP_053942720            2142 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent T-type calcium channel subunit alpha-1I isoform
            X3 [Cuculus canorus].
ACCESSION   XP_053942720
VERSION     XP_053942720.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086745.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2142
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2142
                     /product="voltage-dependent T-type calcium channel subunit
                     alpha-1I isoform X3"
                     /calculated_mol_wt=239615
     Region          93..424
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          608..835
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1119..1391
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1436..1691
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..2142
                     /gene="CACNA1I"
                     /coded_by="XM_054086745.1:639..7067"
                     /db_xref="GeneID:104055539"
ORIGIN      
        1 maeyvsqpss twppgpqpph asticplepv dlgvseqqtp peqppsspel gededvtspt
       61 dpdvpypdla pvvffclkqt tsprnwcikm vcnpwfecvs mmvillncvt lgmyqpcedm
      121 dclsdrckil qvfddfifif famemvlkmv algifgkkcy lgdtwnrldf fivmagmvey
      181 sldlqninls airtvrvlrp lkainrvpsm rilvnllldt lpmlgnvlll cffvffifgi
      241 igvqlwagll rnrcfmeenf tiqgdivlpp yyqpeeddem pficslsgdn gimgcheipp
      301 lkergheccl dkddyyyyns vrqefnisgm cvnwnqyynv crtgnanphk gainfdnigy
      361 awivifqvit legwveimyy vmdahsfynf iyfilliivg sffminlclv viatqfsetk
      421 qrehqlmqeq rarylssstv asymepgdcy eeifqyichi vrkakrrtlg lynsiqsrrq
      481 ghvepsnakr gmsrkdqrhy rlcqqhnsld cpsqglvqpi avtttsdptn cprchkaghe
      541 asrrlsvlds adsdqedrga seeegegsre dqgastggke eveeggrlkl csemwrevra
      601 klrgivdsky fnrgimiail vntismgieh heqpeeltni leisnvvfts mfalemilkl
      661 aafglfdylr npynifdsii viisiweiig qadgglsvlr tfrllrvlkl vrfmpalrrq
      721 lvvlmktmdn vatfcmllml fififsilgm hifgckfslr tdtgdtvpdr knfdsllwai
      781 vtvfqiltqe dwnvvlyngm astspwasly fvalmtfgny vlfnllvail vegfqaegda
      841 nrsysdedqs ssnmedldqc qevqegsdpk lcaipvtpng hldpslpssn psvaaggvtn
      901 ssrnslqpdq irvavgsrks svmslgrmty dqrslsssrs shygawgrsg awssrrsswn
      961 tlarghslkh kppsaehesl lsgerhraad gepdgagraf hhrrtlsldn kgscdllela
     1021 svpsshrvtr klgaatgvse hqdcngkmps iakeifpkmd nrkergedde eidyslcfri
     1081 rkmmevykpd wcelredwsi ylfspqnrfr llcqtiiahk lfdyvvlafi flncitiale
     1141 rpqiehrste rifltvsnyi ftaifvaemt lkvvslglyf gdqaylrssw nildgflvfv
     1201 slidivvsva saggakilgv lrvlrllrtl rplrvisrap glklvvetli sslkpigniv
     1261 liccaffiif gilgvqlfkg kfyhclgvdi rnitnrsdcm aanykwvhhk ynfdnlgqal
     1321 mslfvlaskd gwvnimyngl davavdqqpv tnnnpwmlly fisfllivsf fvlnmfvgvv
     1381 venfhkcrqh qeaeearrre ekrlrrlekk rrkaqrlpyy atycplrlli hsvctshyld
     1441 ifitfiicln vvtmslehyn qpvsletalk ycnylfttvf vleavlklva fglrrffkdr
     1501 wnqldlaivl lsvmgitlee ieinaalpin ptiirimrvl riarvlkllk matgmralld
     1561 tvvqalpqvg nlgllfmllf fiyaalgvel fgklvcnden pcegmsrhat fenfgmaflt
     1621 lfqvstgdnw ngimkdtlrd cshddrscls nlqfisplyf vsfvltaqfv linvvvavlm
     1681 khlddsnkea qedaemdaei eleiahglcs rksgssnsrq gkgagtgggs grtdpegrlc
     1741 trcyspaqvq laemealsln sdksssillg desdnrstsq lspkemkqdg qesadsngeg
     1801 dlgecllpms nvdsstnpns ylcemektpf nsvqswlqhe stkappspfs pgascpllpv
     1861 paeffhpais atqtgpekvs cprnlpkisl qgswaslrsp svncsllqqa pesdtsldsr
     1921 ssssagslqt tledslnlsd spqctldlpv alcpmpasds qrplgvplsp asrrrslrgr
     1981 glfslqsirr hqrshssggs tspgcthhds mdpsdeegvg sslrgggnns epsetlssls
     2041 ltslfspppp gltlvkkcss tsslhaspsp rrptahhakp fytvdprgfl smpswvtdfc
     2101 kdtpsprege epdgpgrlgt gdcgsplpse lelgdgvskr nr
//
LOCUS       XP_053942728            2141 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent T-type calcium channel subunit alpha-1I isoform
            X4 [Cuculus canorus].
ACCESSION   XP_053942728
VERSION     XP_053942728.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086753.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2141
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2141
                     /product="voltage-dependent T-type calcium channel subunit
                     alpha-1I isoform X4"
                     /calculated_mol_wt=239487
     Region          93..424
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          608..835
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1119..1391
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1436..1691
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..2141
                     /gene="CACNA1I"
                     /coded_by="XM_054086753.1:639..7064"
                     /db_xref="GeneID:104055539"
ORIGIN      
        1 maeyvsqpss twppgpqpph asticplepv dlgvseqqtp peqppsspel gededvtspt
       61 dpdvpypdla pvvffclkqt tsprnwcikm vcnpwfecvs mmvillncvt lgmyqpcedm
      121 dclsdrckil qvfddfifif famemvlkmv algifgkkcy lgdtwnrldf fivmagmvey
      181 sldlqninls airtvrvlrp lkainrvpsm rilvnllldt lpmlgnvlll cffvffifgi
      241 igvqlwagll rnrcfmeenf tiqgdivlpp yyqpeeddem pficslsgdn gimgcheipp
      301 lkergheccl dkddyyyyns vrqefnisgm cvnwnqyynv crtgnanphk gainfdnigy
      361 awivifqvit legwveimyy vmdahsfynf iyfilliivg sffminlclv viatqfsetk
      421 qrehqlmqeq rarylssstv asymepgdcy eeifqyichi vrkakrrtlg lynsiqsrrq
      481 ghvepsnakr gmsrkdqrhy rlcqqhnsld cpsqglvqpi avtttsdptn cprchkaghe
      541 asrrlsvlds adsdqedrga seeegegsre dqgastggke eveeggrlkl csemwrevra
      601 klrgivdsky fnrgimiail vntismgieh heqpeeltni leisnvvfts mfalemilkl
      661 aafglfdylr npynifdsii viisiweiig qadgglsvlr tfrllrvlkl vrfmpalrrq
      721 lvvlmktmdn vatfcmllml fififsilgm hifgckfslr tdtgdtvpdr knfdsllwai
      781 vtvfqiltqe dwnvvlyngm astspwasly fvalmtfgny vlfnllvail vegfqaegda
      841 nrsysdedqs ssnmedldqc qevqegsdpk lcaipvtpng hldpslpssn psvaaggvtn
      901 ssrnslqpdq irvavgsrks svmslgrmty dqrslsssrs shygawgrsg awssrrsswn
      961 tlarghslkh kppsaehesl lsgerhraad gepdgagraf hhrrtlsldn kgscdllela
     1021 svpsshrvtr klgaatgvse hqdcngkmps iakeifpkmd nrkergedde eidyslcfri
     1081 rkmmevykpd wcelredwsi ylfspqnrfr llcqtiiahk lfdyvvlafi flncitiale
     1141 rpqiehrste rifltvsnyi ftaifvaemt lkvvslglyf gdqaylrssw nildgflvfv
     1201 slidivvsva saggakilgv lrvlrllrtl rplrvisrap glklvvetli sslkpigniv
     1261 liccaffiif gilgvqlfkg kfyhclgvdi rnitnrsdcm aanykwvhhk ynfdnlgqal
     1321 mslfvlaskd gwvnimyngl davavdqqpv tnnnpwmlly fisfllivsf fvlnmfvgvv
     1381 venfhkcrqh qeaeearrre ekrlrrlekk rrkaqrlpyy atycplrlli hsvctshyld
     1441 ifitfiicln vvtmslehyn qpvsletalk ycnylfttvf vleavlklva fglrrffkdr
     1501 wnqldlaivl lsvmgitlee ieinaalpin ptiirimrvl riarvlkllk matgmralld
     1561 tvvqalpqvg nlgllfmllf fiyaalgvel fgklvcnden pcegmsrhat fenfgmaflt
     1621 lfqvstgdnw ngimkdtlrd cshddrscls nlqfisplyf vsfvltaqfv linvvvavlm
     1681 khlddsnkea qedaemdaei eleiahglcs rksgssnsrq gkgagtgggs grtdpegrlc
     1741 trcyspaqvq laemealsln sdksssillg desdnrstsq lspkemkdgq esadsngegd
     1801 lgecllpmsn vdsstnpnsy lcemektpfn svqswlqhes tkappspfsp gascpllpvp
     1861 aeffhpaisa tqtgpekvsc prnlpkislq gswaslrsps vncsllqqap esdtsldsrs
     1921 sssagslqtt ledslnlsds pqctldlpva lcpmpasdsq rplgvplspa srrrslrgrg
     1981 lfslqsirrh qrshssggst spgcthhdsm dpsdeegvgs slrgggnnse psetlsslsl
     2041 tslfsppppg ltlvkkcsst sslhaspspr rptahhakpf ytvdprgfls mpswvtdfck
     2101 dtpspregee pdgpgrlgtg dcgsplpsel elgdgvskrn r
//
LOCUS       XP_053942735            1912 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent T-type calcium channel subunit alpha-1I isoform
            X5 [Cuculus canorus].
ACCESSION   XP_053942735
VERSION     XP_053942735.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086760.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1912
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1912
                     /product="voltage-dependent T-type calcium channel subunit
                     alpha-1I isoform X5"
                     /calculated_mol_wt=213511
     Region          <56..145
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          329..556
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          840..1112
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          1157..1412
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..1912
                     /gene="CACNA1I"
                     /coded_by="XM_054086760.1:187..5925"
                     /db_xref="GeneID:104055539"
ORIGIN      
        1 mpficslsgd ngimgcheip plkerghecc ldkddyyyyn svrqefnisg mcvnwnqyyn
       61 vcrtgnanph kgainfdnig yawivifqvi tlegwveimy yvmdahsfyn fiyfilliiv
      121 gsffminlcl vviatqfset kqrehqlmqe qrarylssst vasymepgdc yeeifqyich
      181 ivrkakrrtl glynsiqsrr qghvepsnak rgmsrkdqrh yrlcqqhnsl dcpsqglvqp
      241 iavtttsdpt ncprchkagh easrrlsvld sadsdqedrg aseeegegsr edqgastggk
      301 eeveeggrlk lcsemwrevr aklrgivdsk yfnrgimiai lvntismgie hheqpeeltn
      361 ileisnvvft smfalemilk laafglfdyl rnpynifdsi iviisiweii gqadgglsvl
      421 rtfrllrvlk lvrfmpalrr qlvvlmktmd nvatfcmllm lfififsilg mhifgckfsl
      481 rtdtgdtvpd rknfdsllwa ivtvfqiltq edwnvvlyng mastspwasl yfvalmtfgn
      541 yvlfnllvai lvegfqaegd anrsysdedq sssnmedldq cqevqegsdp klcaipvtpn
      601 ghldpslpss npsvaaggvt nssrnslqpd qirvavgsrk ssvmslgrmt ydqrslsssr
      661 sshygawgrs gawssrrssw ntlarghslk hkppsaehes llsgerhraa dgepdgagra
      721 fhhrrtlsld nkgscdllel asvpsshrvt rklgaatgvs ehqdcngkmp siakeifpkm
      781 dnrkergedd eeidyslcfr irkmmevykp dwcelredws iylfspqnrf rllcqtiiah
      841 klfdyvvlaf iflncitial erpqiehrst erifltvsny iftaifvaem tlkvvslgly
      901 fgdqaylrss wnildgflvf vslidivvsv asaggakilg vlrvlrllrt lrplrvisra
      961 pglklvvetl isslkpigni vliccaffii fgilgvqlfk gkfyhclgvd irnitnrsdc
     1021 maanykwvhh kynfdnlgqa lmslfvlask dgwvnimyng ldavavdqqp vtnnnpwmll
     1081 yfisfllivs ffvlnmfvgv vvenfhkcrq hqeaeearrr eekrlrrlek krrkaqrlpy
     1141 yatycplrll ihsvctshyl difitfiicl nvvtmslehy nqpvsletal kycnylfttv
     1201 fvleavlklv afglrrffkd rwnqldlaiv llsvmgitle eieinaalpi nptiirimrv
     1261 lriarvlkll kmatgmrall dtvvqalpqv gnlgllfmll ffiyaalgve lfgklvcnde
     1321 npcegmsrha tfenfgmafl tlfqvstgdn wngimkdtlr dcshddrscl snlqfisply
     1381 fvsfvltaqf vlinvvvavl mkhlddsnke aqedaemdae ieleiahglc srksgssnsr
     1441 qgkgagtggg sgrtdpegrl ctrcyspaqe nlwldsvsli ikdsfdgelm iidnlsgsvf
     1501 hhysspamce kcnhdkqevq laemealsln sdksssillg desdnrstsq lspkemkqdg
     1561 qesadsngeg dlgecllpms nvdsstnpns ylcemektpf nsvqswlqhe stkappspfs
     1621 pgascpllpv paeffhpais atqtgpekvs cprnlpkisl qgswaslrsp svncsllqqa
     1681 pesdtsldsr ssssagslqt tledslnlsd spqctldlpv alcpmpasds qrplgvplsp
     1741 asrrrslrgr glfslqsirr hqrshssggs tspgcthhds mdpsdeegvg sslrgggnns
     1801 epsetlssls ltslfspppp gltlvkkcss tsslhaspsp rrptahhakp fytvdprgfl
     1861 smpswvtdfc kdtpsprege epdgpgrlgt gdcgsplpse lelgdgvskr nr
//
LOCUS       XP_053942741             558 aa            linear   VRT 09-MAR-2023
DEFINITION  thromboxane-A synthase isoform X1 [Cuculus canorus].
ACCESSION   XP_053942741
VERSION     XP_053942741.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086766.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..558
                     /product="thromboxane-A synthase isoform X1"
                     /calculated_mol_wt=63279
     Region          99..552
                     /region_name="cytochrome_P450"
                     /note="cytochrome P450 (CYP) superfamily; cl41757"
                     /db_xref="CDD:477761"
     Site            order(158,162,169,216,363..364,367..368,371..372,375,426,
                     435,437,460,496..498,502..506,509..510)
                     /site_type="other"
                     /note="heme binding site [chemical binding]"
                     /db_xref="CDD:410651"
     Site            order(245..246,363,366..367,371,433..436)
                     /site_type="other"
                     /note="chemical substrate binding pocket [chemical
                     binding]"
                     /db_xref="CDD:410651"
     CDS             1..558
                     /gene="TBXAS1"
                     /coded_by="XM_054086766.1:164..1840"
                     /db_xref="GeneID:104058933"
ORIGIN      
        1 megpsactad pgriqdsclv fnisatqwfh leilshqlst acarvhivfp spgkhrysts
       61 afsklskvgi rhppplpfig nllffregfw enhtklitey gpicgyyigr qmfvvistpd
      121 mikqilvtdf snfsnrtkpn liskpmldsi lclrddrwry vrslltpafs dtklkemtpl
      181 inqacdvllc nlkvyadsgk afdiqrcync ftldvvgsva fgievdsqkn pndpfvkncr
      241 tffemslfkp llililsfps imipllrilp nkkqkelnrf fiqtikkaia frdqqdaaer
      301 rrdflqwmld srdsadslea acfdvisssa asrqskapln skapsekvqk tltedeiagq
      361 aflfliagye tttstlsfat yllatnpecq ekvlwevdef sakhmvpdyq nvqelpyldm
      421 viaetlrmyp pafrftreaa kdcvvlgqhi pagavietav ghlhhnpefw pqpekfiper
      481 fteeakkerd pftylpfgtg prgcigmkmg lletkitllr ilqkfqfktc peteiplqlk
      541 skatlgpkng vyimlesr
//
LOCUS       XP_053942743             535 aa            linear   VRT 09-MAR-2023
DEFINITION  thromboxane-A synthase isoform X2 [Cuculus canorus].
ACCESSION   XP_053942743
VERSION     XP_053942743.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086768.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..535
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..535
                     /product="thromboxane-A synthase isoform X2"
                     /calculated_mol_wt=60802
     Region          76..529
                     /region_name="cytochrome_P450"
                     /note="cytochrome P450 (CYP) superfamily; cl41757"
                     /db_xref="CDD:477761"
     Site            order(135,139,146,193,340..341,344..345,348..349,352,403,
                     412,414,437,473..475,479..483,486..487)
                     /site_type="other"
                     /note="heme binding site [chemical binding]"
                     /db_xref="CDD:410651"
     Site            order(222..223,340,343..344,348,410..413)
                     /site_type="other"
                     /note="chemical substrate binding pocket [chemical
                     binding]"
                     /db_xref="CDD:410651"
     CDS             1..535
                     /gene="TBXAS1"
                     /coded_by="XM_054086768.1:306..1913"
                     /db_xref="GeneID:104058933"
ORIGIN      
        1 mepvdllafv saemnsttvt lallalflvl lywystsafs klskvgirhp pplpfignll
       61 ffregfwenh tkliteygpi cgyyigrqmf vvistpdmik qilvtdfsnf snrtkpnlis
      121 kpmldsilcl rddrwryvrs lltpafsdtk lkemtplinq acdvllcnlk vyadsgkafd
      181 iqrcyncftl dvvgsvafgi evdsqknpnd pfvkncrtff emslfkplli lilsfpsimi
      241 pllrilpnkk qkelnrffiq tikkaiafrd qqdaaerrrd flqwmldsrd sadsleaacf
      301 dvisssaasr qskaplnska psekvqktlt edeiagqafl fliagyettt stlsfatyll
      361 atnpecqekv lwevdefsak hmvpdyqnvq elpyldmvia etlrmyppaf rftreaakdc
      421 vvlgqhipag avietavghl hhnpefwpqp ekfiperfte eakkerdpft ylpfgtgprg
      481 cigmkmglle tkitllrilq kfqfktcpet eiplqlkska tlgpkngvyi mlesr
//
LOCUS       XP_053942750             506 aa            linear   VRT 09-MAR-2023
DEFINITION  thromboxane-A synthase isoform X3 [Cuculus canorus].
ACCESSION   XP_053942750
VERSION     XP_053942750.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086775.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..506
                     /product="thromboxane-A synthase isoform X3"
                     /calculated_mol_wt=57517
     Region          47..500
                     /region_name="cytochrome_P450"
                     /note="cytochrome P450 (CYP) superfamily; cl41757"
                     /db_xref="CDD:477761"
     Site            order(106,110,117,164,311..312,315..316,319..320,323,374,
                     383,385,408,444..446,450..454,457..458)
                     /site_type="other"
                     /note="heme binding site [chemical binding]"
                     /db_xref="CDD:410651"
     Site            order(193..194,311,314..315,319,381..384)
                     /site_type="other"
                     /note="chemical substrate binding pocket [chemical
                     binding]"
                     /db_xref="CDD:410651"
     CDS             1..506
                     /gene="TBXAS1"
                     /coded_by="XM_054086775.1:3..1523"
                     /db_xref="GeneID:104058933"
ORIGIN      
        1 mhllwaadcp nrthavpqvf syflgnlali gspvygfwen htkliteygp icgyyigrqm
       61 fvvistpdmi kqilvtdfsn fsnrtkpnli skpmldsilc lrddrwryvr slltpafsdt
      121 klkemtplin qacdvllcnl kvyadsgkaf diqrcyncft ldvvgsvafg ievdsqknpn
      181 dpfvkncrtf femslfkpll ililsfpsim ipllrilpnk kqkelnrffi qtikkaiafr
      241 dqqdaaerrr dflqwmldsr dsadsleaac fdvisssaas rqskaplnsk apsekvqktl
      301 tedeiagqaf lfliagyett tstlsfatyl latnpecqek vlwevdefsa khmvpdyqnv
      361 qelpyldmvi aetlrmyppa frftreaakd cvvlgqhipa gavietavgh lhhnpefwpq
      421 pekfiperft eeakkerdpf tylpfgtgpr gcigmkmgll etkitllril qkfqfktcpe
      481 teiplqlksk atlgpkngvy imlesr
//
LOCUS       XP_053942760             447 aa            linear   VRT 09-MAR-2023
DEFINITION  thromboxane-A synthase isoform X4 [Cuculus canorus].
ACCESSION   XP_053942760
VERSION     XP_053942760.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086785.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..447
                     /product="thromboxane-A synthase isoform X4"
                     /calculated_mol_wt=50804
     Region          1..441
                     /region_name="cytochrome_P450"
                     /note="cytochrome P450 (CYP) superfamily; cl41757"
                     /db_xref="CDD:477761"
     Site            order(47,51,58,105,252..253,256..257,260..261,264,315,324,
                     326,349,385..387,391..395,398..399)
                     /site_type="other"
                     /note="heme binding site [chemical binding]"
                     /db_xref="CDD:410651"
     Site            order(134..135,252,255..256,260,322..325)
                     /site_type="other"
                     /note="chemical substrate binding pocket [chemical
                     binding]"
                     /db_xref="CDD:410651"
     CDS             1..447
                     /gene="TBXAS1"
                     /coded_by="XM_054086785.1:369..1712"
                     /db_xref="GeneID:104058933"
ORIGIN      
        1 mfvvistpdm ikqilvtdfs nfsnrtkpnl iskpmldsil clrddrwryv rslltpafsd
       61 tklkemtpli nqacdvllcn lkvyadsgka fdiqrcyncf tldvvgsvaf gievdsqknp
      121 ndpfvkncrt ffemslfkpl lililsfpsi mipllrilpn kkqkelnrff iqtikkaiaf
      181 rdqqdaaerr rdflqwmlds rdsadsleaa cfdvisssaa srqskaplns kapsekvqkt
      241 ltedeiagqa flfliagyet ttstlsfaty llatnpecqe kvlwevdefs akhmvpdyqn
      301 vqelpyldmv iaetlrmypp afrftreaak dcvvlgqhip agavietavg hlhhnpefwp
      361 qpekfiperf teeakkerdp ftylpfgtgp rgcigmkmgl letkitllri lqkfqfktcp
      421 eteiplqlks katlgpkngv yimlesr
//
LOCUS       XP_053942768             447 aa            linear   VRT 09-MAR-2023
DEFINITION  thromboxane-A synthase isoform X4 [Cuculus canorus].
ACCESSION   XP_053942768
VERSION     XP_053942768.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086793.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..447
                     /product="thromboxane-A synthase isoform X4"
                     /calculated_mol_wt=50804
     Region          1..441
                     /region_name="cytochrome_P450"
                     /note="cytochrome P450 (CYP) superfamily; cl41757"
                     /db_xref="CDD:477761"
     Site            order(47,51,58,105,252..253,256..257,260..261,264,315,324,
                     326,349,385..387,391..395,398..399)
                     /site_type="other"
                     /note="heme binding site [chemical binding]"
                     /db_xref="CDD:410651"
     Site            order(134..135,252,255..256,260,322..325)
                     /site_type="other"
                     /note="chemical substrate binding pocket [chemical
                     binding]"
                     /db_xref="CDD:410651"
     CDS             1..447
                     /gene="TBXAS1"
                     /coded_by="XM_054086793.1:369..1712"
                     /db_xref="GeneID:104058933"
ORIGIN      
        1 mfvvistpdm ikqilvtdfs nfsnrtkpnl iskpmldsil clrddrwryv rslltpafsd
       61 tklkemtpli nqacdvllcn lkvyadsgka fdiqrcyncf tldvvgsvaf gievdsqknp
      121 ndpfvkncrt ffemslfkpl lililsfpsi mipllrilpn kkqkelnrff iqtikkaiaf
      181 rdqqdaaerr rdflqwmlds rdsadsleaa cfdvisssaa srqskaplns kapsekvqkt
      241 ltedeiagqa flfliagyet ttstlsfaty llatnpecqe kvlwevdefs akhmvpdyqn
      301 vqelpyldmv iaetlrmypp afrftreaak dcvvlgqhip agavietavg hlhhnpefwp
      361 qpekfiperf teeakkerdp ftylpfgtgp rgcigmkmgl letkitllri lqkfqfktcp
      421 eteiplqlks katlgpkngv yimlesr
//
LOCUS       XP_053942776             447 aa            linear   VRT 09-MAR-2023
DEFINITION  thromboxane-A synthase isoform X4 [Cuculus canorus].
ACCESSION   XP_053942776
VERSION     XP_053942776.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086801.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..447
                     /product="thromboxane-A synthase isoform X4"
                     /calculated_mol_wt=50804
     Region          1..441
                     /region_name="cytochrome_P450"
                     /note="cytochrome P450 (CYP) superfamily; cl41757"
                     /db_xref="CDD:477761"
     Site            order(47,51,58,105,252..253,256..257,260..261,264,315,324,
                     326,349,385..387,391..395,398..399)
                     /site_type="other"
                     /note="heme binding site [chemical binding]"
                     /db_xref="CDD:410651"
     Site            order(134..135,252,255..256,260,322..325)
                     /site_type="other"
                     /note="chemical substrate binding pocket [chemical
                     binding]"
                     /db_xref="CDD:410651"
     CDS             1..447
                     /gene="TBXAS1"
                     /coded_by="XM_054086801.1:92..1435"
                     /db_xref="GeneID:104058933"
ORIGIN      
        1 mfvvistpdm ikqilvtdfs nfsnrtkpnl iskpmldsil clrddrwryv rslltpafsd
       61 tklkemtpli nqacdvllcn lkvyadsgka fdiqrcyncf tldvvgsvaf gievdsqknp
      121 ndpfvkncrt ffemslfkpl lililsfpsi mipllrilpn kkqkelnrff iqtikkaiaf
      181 rdqqdaaerr rdflqwmlds rdsadsleaa cfdvisssaa srqskaplns kapsekvqkt
      241 ltedeiagqa flfliagyet ttstlsfaty llatnpecqe kvlwevdefs akhmvpdyqn
      301 vqelpyldmv iaetlrmypp afrftreaak dcvvlgqhip agavietavg hlhhnpefwp
      361 qpekfiperf teeakkerdp ftylpfgtgp rgcigmkmgl letkitllri lqkfqfktcp
      421 eteiplqlks katlgpkngv yimlesr
//
LOCUS       XP_053942798            1581 aa            linear   VRT 09-MAR-2023
DEFINITION  actin remodeling regulator NHS isoform X1 [Cuculus canorus].
ACCESSION   XP_053942798
VERSION     XP_053942798.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086823.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1581
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1581
                     /product="actin remodeling regulator NHS isoform X1"
                     /calculated_mol_wt=170660
     Region          376..1006
                     /region_name="NHS"
                     /note="NHS-like; pfam15273"
                     /db_xref="CDD:464606"
     CDS             1..1581
                     /gene="NHS"
                     /coded_by="XM_054086823.1:294..5039"
                     /db_xref="GeneID:104063414"
ORIGIN      
        1 mpfakrtvep qrlcrrqpvp svleesrgae pppeepgeaa epgggeaaav lmvldlcsvs
       61 nvalsrilrq lsdvarhact lfqeveadlq gthrrvralh griaglqgav rgldpkqeav
      121 pvsnldaesk lsvyyrapwh qqrniflpst rppcveelhh hakqhlralr rehrsrgdnr
      181 eqkvqgsiav vappfppfpa icsqkrhaik drhflpfnst rspspiecch mtpwsrkshp
      241 pededtdvml gqrpknpihn ipstldkqtn wskalplptp eekmkqdaqv issciipinv
      301 tgvgfdreas ircslvhsqs vlqrrrklrr rktisgiprr vqqeidsdes pvarernviv
      361 htnpdfsgss srrsgtrdse cqteeiliaa psrrriraqr gqsvvaslsh sagnilvlad
      421 ngdavftatv snrirsrslp regarasegh qdaatknagy eaecfldsqe ripktgkeil
      481 skqssqerqp isltcpqhlh spehisergr srlsrmadsg sceissnsdt fgspihsist
      541 agvllsshmd qkddhqsssg nwsgssstcp sqtsetippa asppltgssh cdselslnia
      601 pnanedssvf iteqfgdhvd kvrghrassf tstvadlldd pnnsntsdse wnylhhhhda
      661 scrqdfsper pkadslgcps ftsmatydsf lekspsdkad tsshfsvdte gyytsmhfdc
      721 glkgsksyic nyaatssesg qtgsmtssla dctwqecmsh rrqgrqsisl kkpkakpapp
      781 krssslrkse sstdlpdkke pkigggqhvs htaremklpl efsntpsrve gpnlpakqel
      841 twanqgdggl kdtpfdtvdi psfkdegaeq phyadlwlln dlkssdpyrs lsnsstatgt
      901 tviecikspe ssesqtsqsg srattpslps vdnelklasp eklaglasps sgyssqsetp
      961 tssfptaffs gplspggskr kpkvperkss lqqplskdgt asvnkdlelp iippthldls
     1021 alhnvlnkpf ahrhqlhafs hskqstvgea lhpsppsala itpsvlksvh lravnktegg
     1081 kqkgstpdll ciqettlmat dispgkmrpl lakkpvsrqy steeaimsyi dispadagpg
     1141 kppleksssf sgqnsceqea vtsasislve ikpgkdqtcs aaeclpestl nqmyaistdg
     1201 fqkgsdvlig ddkakqpgqe aetehdnwev qaqqepstgs eerleagsge qspaqaegva
     1261 vsdqlkhqpn vshlvpgnig feaemaaens lgevsskqen ntasgiptks asddsradem
     1321 aggtdepslk esspsdesiv splseesqad aeevfvspnk prttedlfav ihrskrkvlg
     1381 rkdsgdlsvr nrlrassgts sqppasstlp atnvpppags vgapissqrs pgliyrnakk
     1441 sntsneefkl lllkkgsrsd ssyrmsatei lkspilpksp geltadapqs leespsavsp
     1501 dalsplspcs prvnaegfss ksfpmsassr vgrsrappaa sssrysvrcr lyntpmqais
     1561 egetensdgs phddrssqss t
//
LOCUS       XP_053942806            1560 aa            linear   VRT 09-MAR-2023
DEFINITION  actin remodeling regulator NHS isoform X2 [Cuculus canorus].
ACCESSION   XP_053942806
VERSION     XP_053942806.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086831.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1560
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1560
                     /product="actin remodeling regulator NHS isoform X2"
                     /calculated_mol_wt=168213
     Region          355..985
                     /region_name="NHS"
                     /note="NHS-like; pfam15273"
                     /db_xref="CDD:464606"
     CDS             1..1560
                     /gene="NHS"
                     /coded_by="XM_054086831.1:293..4975"
                     /db_xref="GeneID:104063414"
ORIGIN      
        1 mpfakrtvep qrlcrrqpvp svleesrgae pppeepgeaa epgggeaaav lmvldlcsvs
       61 nvalsrilrq lsdvarhact lfqeveadlq gthrrvralh griaglqgav rgldpkqeav
      121 pvsnldaesk lsvyyrapwh qqrniflpst rppcveelhh hakqhlralr rehrsrgdnr
      181 eqkvqgsiav vappfppfpa icsqkrhaik drhflpshpp ededtdvmlg qrpknpihni
      241 pstldkqtnw skalplptpe ekmkqdaqvi ssciipinvt gvgfdreasi rcslvhsqsv
      301 lqrrrklrrr ktisgiprrv qqeidsdesp varernvivh tnpdfsgsss rrsgtrdsec
      361 qteeiliaap srrriraqrg qsvvaslshs agnilvladn gdavftatvs nrirsrslpr
      421 egaraseghq daatknagye aecfldsqer ipktgkeils kqssqerqpi sltcpqhlhs
      481 pehisergrs rlsrmadsgs ceissnsdtf gspihsista gvllsshmdq kddhqsssgn
      541 wsgssstcps qtsetippaa sppltgsshc dselslniap nanedssvfi teqfgdhvdk
      601 vrghrassft stvadllddp nnsntsdsew nylhhhhdas crqdfsperp kadslgcpsf
      661 tsmatydsfl ekspsdkadt sshfsvdteg yytsmhfdcg lkgsksyicn yaatssesgq
      721 tgsmtsslad ctwqecmshr rqgrqsislk kpkakpappk rssslrkses stdlpdkkep
      781 kigggqhvsh taremklple fsntpsrveg pnlpakqelt wanqgdgglk dtpfdtvdip
      841 sfkdegaeqp hyadlwllnd lkssdpyrsl snsstatgtt viecikspes sesqtsqsgs
      901 rattpslpsv dnelklaspe klaglaspss gyssqsetpt ssfptaffsg plspggskrk
      961 pkvperkssl qqplskdgta svnkdlelpi ippthldlsa lhnvlnkpfa hrhqlhafsh
     1021 skqstvgeal hpsppsalai tpsvlksvhl ravnkteggk qkgstpdllc iqettlmatd
     1081 ispgkmrpll akkpvsrqys teeaimsyid ispadagpgk ppleksssfs gqnsceqeav
     1141 tsasislvei kpgkdqtcsa aeclpestln qmyaistdgf qkgsdvligd dkakqpgqea
     1201 etehdnwevq aqqepstgse erleagsgeq spaqaegvav sdqlkhqpnv shlvpgnigf
     1261 eaemaaensl gevsskqenn tasgiptksa sddsradema ggtdepslke sspsdesivs
     1321 plseesqada eevfvspnkp rttedlfavi hrskrkvlgr kdsgdlsvrn rlrassgtss
     1381 qppasstlpa tnvpppagsv gapissqrsp gliyrnakks ntsneefkll llkkgsrsds
     1441 syrmsateil kspilpkspg eltadapqsl eespsavspd alsplspcsp rvnaegfssk
     1501 sfpmsassrv grsrappaas ssrysvrcrl yntpmqaise getensdgsp hddrssqsst
//
LOCUS       XP_053942816            1537 aa            linear   VRT 09-MAR-2023
DEFINITION  actin remodeling regulator NHS isoform X3 [Cuculus canorus].
ACCESSION   XP_053942816
VERSION     XP_053942816.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086841.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1537
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1537
                     /product="actin remodeling regulator NHS isoform X3"
                     /calculated_mol_wt=165504
     Region          332..962
                     /region_name="NHS"
                     /note="NHS-like; pfam15273"
                     /db_xref="CDD:464606"
     CDS             1..1537
                     /gene="NHS"
                     /coded_by="XM_054086841.1:294..4907"
                     /db_xref="GeneID:104063414"
ORIGIN      
        1 mpfakrtvep qrlcrrqpvp svleesrgae pppeepgeaa epgggeaaav lmvldlcsvs
       61 nvalsrilrq lsdvarhact lfqeveadlq gthrrvralh griaglqgav rgldpkqeav
      121 pvsnldaesk lsvyyrapwh qqrniflpst rppcveelhh hakqhlralr rehrsrgdnr
      181 eqkvqgsiav vappfppfpa icsqkrhaik drhflpfnst rspspiecch mtpwsrkshp
      241 pededtdvml gqrpknpihn ipstldkqtn wskalplptp eekmkqdaqv issciipinv
      301 tdsdespvar ernvivhtnp dfsgsssrrs gtrdsecqte eiliaapsrr riraqrgqsv
      361 vaslshsagn ilvladngda vftatvsnri rsrslprega raseghqdaa tknagyeaec
      421 fldsqeripk tgkeilskqs sqerqpislt cpqhlhspeh isergrsrls rmadsgscei
      481 ssnsdtfgsp ihsistagvl lsshmdqkdd hqsssgnwsg ssstcpsqts etippaaspp
      541 ltgsshcdse lslniapnan edssvfiteq fgdhvdkvrg hrassftstv adllddpnns
      601 ntsdsewnyl hhhhdascrq dfsperpkad slgcpsftsm atydsfleks psdkadtssh
      661 fsvdtegyyt smhfdcglkg sksyicnyaa tssesgqtgs mtssladctw qecmshrrqg
      721 rqsislkkpk akpappkrss slrksesstd lpdkkepkig ggqhvshtar emklplefsn
      781 tpsrvegpnl pakqeltwan qgdgglkdtp fdtvdipsfk degaeqphya dlwllndlks
      841 sdpyrslsns statgttvie cikspesses qtsqsgsrat tpslpsvdne lklaspekla
      901 glaspssgys sqsetptssf ptaffsgpls pggskrkpkv perksslqqp lskdgtasvn
      961 kdlelpiipp thldlsalhn vlnkpfahrh qlhafshskq stvgealhps ppsalaitps
     1021 vlksvhlrav nkteggkqkg stpdllciqe ttlmatdisp gkmrpllakk pvsrqystee
     1081 aimsyidisp adagpgkppl eksssfsgqn sceqeavtsa sislveikpg kdqtcsaaec
     1141 lpestlnqmy aistdgfqkg sdvligddka kqpgqeaete hdnwevqaqq epstgseerl
     1201 eagsgeqspa qaegvavsdq lkhqpnvshl vpgnigfeae maaenslgev sskqenntas
     1261 giptksasdd srademaggt depslkessp sdesivspls eesqadaeev fvspnkprtt
     1321 edlfavihrs krkvlgrkds gdlsvrnrlr assgtssqpp asstlpatnv pppagsvgap
     1381 issqrspgli yrnakksnts neefkllllk kgsrsdssyr msateilksp ilpkspgelt
     1441 adapqslees psavspdals plspcsprvn aegfssksfp msassrvgrs rappaasssr
     1501 ysvrcrlynt pmqaiseget ensdgsphdd rssqsst
//
LOCUS       XP_053942825            1468 aa            linear   VRT 09-MAR-2023
DEFINITION  actin remodeling regulator NHS isoform X4 [Cuculus canorus].
ACCESSION   XP_053942825
VERSION     XP_053942825.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086850.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1468
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1468
                     /product="actin remodeling regulator NHS isoform X4"
                     /calculated_mol_wt=158495
     Region          263..893
                     /region_name="NHS"
                     /note="NHS-like; pfam15273"
                     /db_xref="CDD:464606"
     CDS             1..1468
                     /gene="NHS"
                     /coded_by="XM_054086850.1:52..4458"
                     /db_xref="GeneID:104063414"
ORIGIN      
        1 mtegphnavs nldaesklsv yyrapwhqqr niflpstrpp cveelhhhak qhlralrreh
       61 rsrgdnreqk vqgsiavvap pfppfpaics qkrhaikdrh flpfnstrsp spiecchmtp
      121 wsrkshpped edtdvmlgqr pknpihnips tldkqtnwsk alplptpeek mkqdaqviss
      181 ciipinvtgv gfdreasirc slvhsqsvlq rrrklrrrkt isgiprrvqq eidsdespva
      241 rernvivhtn pdfsgsssrr sgtrdsecqt eeiliaapsr rriraqrgqs vvaslshsag
      301 nilvladngd avftatvsnr irsrslpreg araseghqda atknagyeae cfldsqerip
      361 ktgkeilskq ssqerqpisl tcpqhlhspe hisergrsrl srmadsgsce issnsdtfgs
      421 pihsistagv llsshmdqkd dhqsssgnws gssstcpsqt setippaasp pltgsshcds
      481 elslniapna nedssvfite qfgdhvdkvr ghrassftst vadllddpnn sntsdsewny
      541 lhhhhdascr qdfsperpka dslgcpsfts matydsflek spsdkadtss hfsvdtegyy
      601 tsmhfdcglk gsksyicnya atssesgqtg smtssladct wqecmshrrq grqsislkkp
      661 kakpappkrs sslrksesst dlpdkkepki gggqhvshta remklplefs ntpsrvegpn
      721 lpakqeltwa nqgdgglkdt pfdtvdipsf kdegaeqphy adlwllndlk ssdpyrslsn
      781 sstatgttvi ecikspesse sqtsqsgsra ttpslpsvdn elklaspekl aglaspssgy
      841 ssqsetptss fptaffsgpl spggskrkpk vperksslqq plskdgtasv nkdlelpiip
      901 pthldlsalh nvlnkpfahr hqlhafshsk qstvgealhp sppsalaitp svlksvhlra
      961 vnkteggkqk gstpdllciq ettlmatdis pgkmrpllak kpvsrqyste eaimsyidis
     1021 padagpgkpp leksssfsgq nsceqeavts asislveikp gkdqtcsaae clpestlnqm
     1081 yaistdgfqk gsdvligddk akqpgqeaet ehdnwevqaq qepstgseer leagsgeqsp
     1141 aqaegvavsd qlkhqpnvsh lvpgnigfea emaaenslge vsskqennta sgiptksasd
     1201 dsrademagg tdepslkess psdesivspl seesqadaee vfvspnkprt tedlfavihr
     1261 skrkvlgrkd sgdlsvrnrl rassgtssqp passtlpatn vpppagsvga pissqrspgl
     1321 iyrnakksnt sneefkllll kkgsrsdssy rmsateilks pilpkspgel tadapqslee
     1381 spsavspdal splspcsprv naegfssksf pmsassrvgr srappaasss rysvrcrlyn
     1441 tpmqaisege tensdgsphd drssqsst
//
LOCUS       XP_053942832            1467 aa            linear   VRT 09-MAR-2023
DEFINITION  actin remodeling regulator NHS isoform X5 [Cuculus canorus].
ACCESSION   XP_053942832
VERSION     XP_053942832.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086857.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1467
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1467
                     /product="actin remodeling regulator NHS isoform X5"
                     /calculated_mol_wt=158458
     Region          262..892
                     /region_name="NHS"
                     /note="NHS-like; pfam15273"
                     /db_xref="CDD:464606"
     CDS             1..1467
                     /gene="NHS"
                     /coded_by="XM_054086857.1:16..4419"
                     /db_xref="GeneID:104063414"
ORIGIN      
        1 mhfasravsn ldaesklsvy yrapwhqqrn iflpstrppc veelhhhakq hlralrrehr
       61 srgdnreqkv qgsiavvapp fppfpaicsq krhaikdrhf lpfnstrsps piecchmtpw
      121 srkshppede dtdvmlgqrp knpihnipst ldkqtnwska lplptpeekm kqdaqvissc
      181 iipinvtgvg fdreasircs lvhsqsvlqr rrklrrrkti sgiprrvqqe idsdespvar
      241 ernvivhtnp dfsgsssrrs gtrdsecqte eiliaapsrr riraqrgqsv vaslshsagn
      301 ilvladngda vftatvsnri rsrslprega raseghqdaa tknagyeaec fldsqeripk
      361 tgkeilskqs sqerqpislt cpqhlhspeh isergrsrls rmadsgscei ssnsdtfgsp
      421 ihsistagvl lsshmdqkdd hqsssgnwsg ssstcpsqts etippaaspp ltgsshcdse
      481 lslniapnan edssvfiteq fgdhvdkvrg hrassftstv adllddpnns ntsdsewnyl
      541 hhhhdascrq dfsperpkad slgcpsftsm atydsfleks psdkadtssh fsvdtegyyt
      601 smhfdcglkg sksyicnyaa tssesgqtgs mtssladctw qecmshrrqg rqsislkkpk
      661 akpappkrss slrksesstd lpdkkepkig ggqhvshtar emklplefsn tpsrvegpnl
      721 pakqeltwan qgdgglkdtp fdtvdipsfk degaeqphya dlwllndlks sdpyrslsns
      781 statgttvie cikspesses qtsqsgsrat tpslpsvdne lklaspekla glaspssgys
      841 sqsetptssf ptaffsgpls pggskrkpkv perksslqqp lskdgtasvn kdlelpiipp
      901 thldlsalhn vlnkpfahrh qlhafshskq stvgealhps ppsalaitps vlksvhlrav
      961 nkteggkqkg stpdllciqe ttlmatdisp gkmrpllakk pvsrqystee aimsyidisp
     1021 adagpgkppl eksssfsgqn sceqeavtsa sislveikpg kdqtcsaaec lpestlnqmy
     1081 aistdgfqkg sdvligddka kqpgqeaete hdnwevqaqq epstgseerl eagsgeqspa
     1141 qaegvavsdq lkhqpnvshl vpgnigfeae maaenslgev sskqenntas giptksasdd
     1201 srademaggt depslkessp sdesivspls eesqadaeev fvspnkprtt edlfavihrs
     1261 krkvlgrkds gdlsvrnrlr assgtssqpp asstlpatnv pppagsvgap issqrspgli
     1321 yrnakksnts neefkllllk kgsrsdssyr msateilksp ilpkspgelt adapqslees
     1381 psavspdals plspcsprvn aegfssksfp msassrvgrs rappaasssr ysvrcrlynt
     1441 pmqaiseget ensdgsphdd rssqsst
//
LOCUS       XP_053942854             713 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium/myo-inositol cotransporter [Cuculus canorus].
ACCESSION   XP_053942854
VERSION     XP_053942854.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086879.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..713
                     /product="sodium/myo-inositol cotransporter"
                     /calculated_mol_wt=79342
     Region          9..713
                     /region_name="SLC5sbd_SMIT"
                     /note="Na(+)/myo-inositol cotransporter SMIT and related
                     proteins; solute-binding domain; cd11491"
                     /db_xref="CDD:271382"
     Site            order(57,60,374,377..378)
                     /site_type="other"
                     /note="Na binding site [ion binding]"
                     /db_xref="CDD:271382"
     CDS             1..713
                     /gene="SLC5A3"
                     /coded_by="XM_054086879.1:440..2581"
                     /db_xref="GeneID:104064751"
ORIGIN      
        1 mrasletadi aivalyfvlv mcigffamwk ynrstvsgyf lagrsmtwva igaslfvsni
       61 gsehfiglag sgaasgfavg awefnalmll qllgwvfvpv yirsgvytmp eylskrfggh
      121 riqiyfaals lilyiftkls vdlysgalfi qeslgwnlyl svilligmta lltvtgglva
      181 viytdtlqal lmiigaltlm iisitevggf eevkrrymla spnitsillt ynisntnscn
      241 vnpkpdalkm lreptdedip wpgfllgqtp asvwywcadq vivqrvlaak niahakgstl
      301 magflkllpm fiivvpgmis rilfaddiac inpehcfqvc gsragcsnia yprlvmklvp
      361 vglrglmmav miaalmsdld sifnsastif tldvyklirk satsrelmiv grvfvafmvv
      421 isiawvpiiv emqggqmyly iqevadyltp pvaalflmgi fwkrcneqga fyggmagfvl
      481 gairlilafi yrapecnqpd trpsfiknih ymyvatalfw itgivtfvvs lltppptkeq
      541 vrtttfwavk nrnvkenaak gelykvqeks ilkcnentnh iipngrseen iknikpedin
      601 llvtcrddsn pvisvshsev etpvdcysng qaalmgekkh eeetddrerh lkfidwfcgf
      661 ksknmnkrav remeeetvcl qmleetpkvk lllntglvcv cslgifmfvy fsl
//
LOCUS       XP_053942868             121 aa            linear   VRT 09-MAR-2023
DEFINITION  28S ribosomal protein S6, mitochondrial [Cuculus canorus].
ACCESSION   XP_053942868
VERSION     XP_053942868.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086893.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..121
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..121
                     /product="28S ribosomal protein S6, mitochondrial"
                     /calculated_mol_wt=13740
     Region          3..95
                     /region_name="bS6_mito"
                     /note="Mitochondrial Ribosomal Protein (MRP) S6; cd15465"
                     /db_xref="CDD:275386"
     Site            order(4,49,53,72,75..76,83,90,93..95)
                     /site_type="other"
                     /note="rRNA binding site [nucleotide binding]"
                     /db_xref="CDD:275386"
     Site            order(5,7,45,47..49,63,65,90,94)
                     /site_type="other"
                     /note="S18 interface [polypeptide binding]"
                     /db_xref="CDD:275386"
     CDS             1..121
                     /gene="MRPS6"
                     /coded_by="XM_054086893.1:91..456"
                     /db_xref="GeneID:104064750"
ORIGIN      
        1 mpryelalil kamqrpetaa vlkrtvealm ergaivrnle nlgerslpyk iskhnerhrr
       61 ggyflidlea ppsivstmmd hlgrdidvir rafikypvsk teecsgiipv nnedkliakk
      121 k
//
LOCUS       XP_053942874             603 aa            linear   VRT 09-MAR-2023
DEFINITION  CD166 antigen isoform X1 [Cuculus canorus].
ACCESSION   XP_053942874
VERSION     XP_053942874.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086899.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..603
                     /product="CD166 antigen isoform X1"
                     /calculated_mol_wt=67025
     Region          33..119
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          41..45
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          55..59
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          99..102
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          112..117
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          138..143
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409354"
     Region          139..233
                     /region_name="C2-set_2"
                     /note="CD80-like C2-set immunoglobulin domain; pfam08205"
                     /db_xref="CDD:400489"
     Site            order(140..143,155,158,160,162,201..204,206,208..209)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:409354"
     Region          154..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409354"
     Region          168..173
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409354"
     Region          180..181
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409354"
     Region          189..194
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409354"
     Region          201..209
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409354"
     Region          219..226
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409354"
     Region          257..331
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          268..272
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          283..287
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          298..302
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          312..317
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          323..326
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          340..413
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          364..368
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          433..498
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cd00096"
                     /db_xref="CDD:409353"
     Region          433..436
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          445..449
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          470..474
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          483..488
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..603
                     /gene="ALCAM"
                     /coded_by="XM_054086899.1:261..2072"
                     /db_xref="GeneID:104056173"
ORIGIN      
        1 mmeppacssr rrpllcllla alclppalgl ytvnavygdt itmpcrlevp dglmfgkwky
       61 empngspvfi afrsstkknv qyddvpdykd rlslsenytl siknarisde krfvcmlvte
      121 ddvseeptiv kvfkqpsqpe ilhqadflet eklqmlgecv ardsypegnv twykngrilq
      181 pveevvvinf qkmvdkstgl ftmtsslqym ptkedvnakf scvvtyygps gqktiesepv
      241 vfnvyyptek vtiqvlpqss aikegdnitl kcsgngnppp qeflfyipge aegirssdty
      301 imtdvrrnat geykcsltdk smmdsttitv hyldlqltps gevtkqigea lpvsctisss
      361 knatvfwskd ntrmptspsf sslqyqdagn yicattlqgv eglqkrktlk livegkpqik
      421 mtkktntnrm sktiichveg fpkpavqwtv tgsgsiinkt eetryvngkf sskiviapee
      481 nvtltctaen qlertvtsln vsaisipeyd epedrnddss ekvndqakli vgivvglllv
      541 alvagvvywl yvkksndtkg ksekaaaqnf pslprtaskh vdkdlgniee nkkleennhk
      601 set
//
LOCUS       XP_053942881             586 aa            linear   VRT 09-MAR-2023
DEFINITION  CD166 antigen isoform X2 [Cuculus canorus].
ACCESSION   XP_053942881
VERSION     XP_053942881.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086906.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..586
                     /product="CD166 antigen isoform X2"
                     /calculated_mol_wt=65328
     Region          35..121
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          43..47
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          57..61
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          101..104
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          114..119
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          140..145
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409354"
     Region          141..235
                     /region_name="C2-set_2"
                     /note="CD80-like C2-set immunoglobulin domain; pfam08205"
                     /db_xref="CDD:400489"
     Site            order(142..145,157,160,162,164,203..206,208,210..211)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:409354"
     Region          156..164
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409354"
     Region          170..175
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409354"
     Region          182..183
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409354"
     Region          191..196
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409354"
     Region          203..211
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409354"
     Region          221..228
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409354"
     Region          259..333
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          270..274
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          285..289
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          300..304
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          314..319
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          325..328
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          342..415
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          366..370
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          435..500
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cd00096"
                     /db_xref="CDD:409353"
     Region          435..438
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          447..451
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          472..476
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          485..490
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..586
                     /gene="ALCAM"
                     /coded_by="XM_054086906.1:16..1776"
                     /db_xref="GeneID:104056173"
ORIGIN      
        1 mrkliltrtc iselkmlkmv sslsvsslal glytvnavyg dtitmpcrle vpdglmfgkw
       61 kyempngspv fiafrsstkk nvqyddvpdy kdrlslseny tlsiknaris dekrfvcmlv
      121 teddvseept ivkvfkqpsq peilhqadfl eteklqmlge cvardsypeg nvtwykngri
      181 lqpveevvvi nfqkmvdkst glftmtsslq ymptkedvna kfscvvtyyg psgqktiese
      241 pvvfnvyypt ekvtiqvlpq ssaikegdni tlkcsgngnp ppqeflfyip geaegirssd
      301 tyimtdvrrn atgeykcslt dksmmdstti tvhyldlqlt psgevtkqig ealpvsctis
      361 ssknatvfws kdntrmptsp sfsslqyqda gnyicattlq gveglqkrkt lklivegkpq
      421 ikmtkktntn rmsktiichv egfpkpavqw tvtgsgsiin kteetryvng kfsskiviap
      481 eenvtltcta enqlertvts lnvsaisipe ydepedrndd ssekvndqak livgivvgll
      541 lvalvagvvy wlyvkkskta skhvdkdlgn ieenkkleen nhkset
//
LOCUS       XP_053942887             581 aa            linear   VRT 09-MAR-2023
DEFINITION  CD166 antigen isoform X3 [Cuculus canorus].
ACCESSION   XP_053942887
VERSION     XP_053942887.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086912.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..581
                     /product="CD166 antigen isoform X3"
                     /calculated_mol_wt=64722
     Region          11..97
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          19..23
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          33..37
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          77..80
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          90..95
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          116..121
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409354"
     Region          117..211
                     /region_name="C2-set_2"
                     /note="CD80-like C2-set immunoglobulin domain; pfam08205"
                     /db_xref="CDD:400489"
     Site            order(118..121,133,136,138,140,179..182,184,186..187)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:409354"
     Region          132..140
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409354"
     Region          146..151
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409354"
     Region          158..159
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409354"
     Region          167..172
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409354"
     Region          179..187
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409354"
     Region          197..204
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409354"
     Region          235..309
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          246..250
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          261..265
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          276..280
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          290..295
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          301..304
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          318..391
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          342..346
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          411..476
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cd00096"
                     /db_xref="CDD:409353"
     Region          411..414
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          423..427
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          448..452
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          461..466
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..581
                     /gene="ALCAM"
                     /coded_by="XM_054086912.1:41..1786"
                     /db_xref="GeneID:104056173"
ORIGIN      
        1 mmiralglyt vnavygdtit mpcrlevpdg lmfgkwkyem pngspvfiaf rsstkknvqy
       61 ddvpdykdrl slsenytlsi knarisdekr fvcmlvtedd vseeptivkv fkqpsqpeil
      121 hqadfletek lqmlgecvar dsypegnvtw ykngrilqpv eevvvinfqk mvdkstglft
      181 mtsslqympt kedvnakfsc vvtyygpsgq ktiesepvvf nvyyptekvt iqvlpqssai
      241 kegdnitlkc sgngnpppqe flfyipgeae girssdtyim tdvrrnatge ykcsltdksm
      301 mdsttitvhy ldlqltpsge vtkqigealp vsctissskn atvfwskdnt rmptspsfss
      361 lqyqdagnyi cattlqgveg lqkrktlkli vegkpqikmt kktntnrmsk tiichvegfp
      421 kpavqwtvtg sgsiinktee tryvngkfss kiviapeenv tltctaenql ertvtslnvs
      481 aisipeydep edrnddssek vndqaklivg ivvglllval vagvvywlyv kksndtkgks
      541 ekaaaqnfps lprtaskhvd kdlgnieenk kleennhkse t
//
LOCUS       XP_053942894             561 aa            linear   VRT 09-MAR-2023
DEFINITION  CD166 antigen isoform X4 [Cuculus canorus].
ACCESSION   XP_053942894
VERSION     XP_053942894.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086919.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..561
                     /product="CD166 antigen isoform X4"
                     /calculated_mol_wt=62537
     Region          1..73
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          96..101
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409354"
     Region          97..191
                     /region_name="C2-set_2"
                     /note="CD80-like C2-set immunoglobulin domain; pfam08205"
                     /db_xref="CDD:400489"
     Site            order(98..101,113,116,118,120,159..162,164,166..167)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:409354"
     Region          112..120
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409354"
     Region          126..131
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409354"
     Region          138..139
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409354"
     Region          147..152
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409354"
     Region          159..167
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409354"
     Region          177..184
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409354"
     Region          215..289
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          226..230
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          241..245
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          256..260
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          270..275
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          281..284
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          298..371
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          322..326
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          391..456
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cd00096"
                     /db_xref="CDD:409353"
     Region          391..394
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          403..407
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          428..432
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          441..446
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..561
                     /gene="ALCAM"
                     /coded_by="XM_054086919.1:275..1960"
                     /db_xref="GeneID:104056173"
ORIGIN      
        1 mpcrlevpdg lmfgkwkyem pngspvfiaf rsstkknvqy ddvpdykdrl slsenytlsi
       61 knarisdekr fvcmlvtedd vseeptivkv fkqpsqpeil hqadfletek lqmlgecvar
      121 dsypegnvtw ykngrilqpv eevvvinfqk mvdkstglft mtsslqympt kedvnakfsc
      181 vvtyygpsgq ktiesepvvf nvyyptekvt iqvlpqssai kegdnitlkc sgngnpppqe
      241 flfyipgeae girssdtyim tdvrrnatge ykcsltdksm mdsttitvhy ldlqltpsge
      301 vtkqigealp vsctissskn atvfwskdnt rmptspsfss lqyqdagnyi cattlqgveg
      361 lqkrktlkli vegkpqikmt kktntnrmsk tiichvegfp kpavqwtvtg sgsiinktee
      421 tryvngkfss kiviapeenv tltctaenql ertvtslnvs aisipeydep edrnddssek
      481 vndqaklivg ivvglllval vagvvywlyv kksndtkgks ekaaaqnfps lprtaskhvd
      541 kdlgnieenk kleennhkse t
//
LOCUS       XP_053942900             561 aa            linear   VRT 09-MAR-2023
DEFINITION  CD166 antigen isoform X4 [Cuculus canorus].
ACCESSION   XP_053942900
VERSION     XP_053942900.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086925.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..561
                     /product="CD166 antigen isoform X4"
                     /calculated_mol_wt=62537
     Region          1..73
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          96..101
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409354"
     Region          97..191
                     /region_name="C2-set_2"
                     /note="CD80-like C2-set immunoglobulin domain; pfam08205"
                     /db_xref="CDD:400489"
     Site            order(98..101,113,116,118,120,159..162,164,166..167)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:409354"
     Region          112..120
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409354"
     Region          126..131
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409354"
     Region          138..139
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409354"
     Region          147..152
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409354"
     Region          159..167
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409354"
     Region          177..184
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409354"
     Region          215..289
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          226..230
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          241..245
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          256..260
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          270..275
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          281..284
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          298..371
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          322..326
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          391..456
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cd00096"
                     /db_xref="CDD:409353"
     Region          391..394
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          403..407
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          428..432
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          441..446
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..561
                     /gene="ALCAM"
                     /coded_by="XM_054086925.1:100..1785"
                     /db_xref="GeneID:104056173"
ORIGIN      
        1 mpcrlevpdg lmfgkwkyem pngspvfiaf rsstkknvqy ddvpdykdrl slsenytlsi
       61 knarisdekr fvcmlvtedd vseeptivkv fkqpsqpeil hqadfletek lqmlgecvar
      121 dsypegnvtw ykngrilqpv eevvvinfqk mvdkstglft mtsslqympt kedvnakfsc
      181 vvtyygpsgq ktiesepvvf nvyyptekvt iqvlpqssai kegdnitlkc sgngnpppqe
      241 flfyipgeae girssdtyim tdvrrnatge ykcsltdksm mdsttitvhy ldlqltpsge
      301 vtkqigealp vsctissskn atvfwskdnt rmptspsfss lqyqdagnyi cattlqgveg
      361 lqkrktlkli vegkpqikmt kktntnrmsk tiichvegfp kpavqwtvtg sgsiinktee
      421 tryvngkfss kiviapeenv tltctaenql ertvtslnvs aisipeydep edrnddssek
      481 vndqaklivg ivvglllval vagvvywlyv kksndtkgks ekaaaqnfps lprtaskhvd
      541 kdlgnieenk kleennhkse t
//
LOCUS       XP_053942926             365 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-parvin isoform X1 [Cuculus canorus].
ACCESSION   XP_053942926
VERSION     XP_053942926.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086951.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..365
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..365
                     /product="beta-parvin isoform X1"
                     /calculated_mol_wt=41712
     Region          89..194
                     /region_name="CH_PARVB_rpt1"
                     /note="first calponin homology (CH) domain found in
                     beta-parvin; cd21336"
                     /db_xref="CDD:409185"
     Site            order(90,94,145,147..148,151..152,154,166..174,179,
                     181..182,184..185,188..189,192)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409185"
     Region          236..365
                     /region_name="CH_PARVB_rpt2"
                     /note="second calponin homology (CH) domain found in
                     beta-parvin; cd21338"
                     /db_xref="CDD:409187"
     Site            order(257,261,315,317..318,321..322,324,333..341,346,
                     348..349,351..352,355..356,359)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409187"
     CDS             1..365
                     /gene="LOC104067348"
                     /coded_by="XM_054086951.1:106..1203"
                     /db_xref="GeneID:104067348"
ORIGIN      
        1 msaapvrspt lrphrmkkde sflgklggtl arkkkakevs dlqeegknai napmnpsavd
       61 ihpedtllee neertmidpn skedpkfkel ikvlidwind vlveeriivk qleedlydgq
      121 vlqkllekma nrklnvaevt qseigqkqkl qtvleavhdl lrphgwtikw nvdsihgknl
      181 isilhllval amhfrapirl pehvsvqvvv vrkregllqt thvteelttt temmmgrfer
      241 dafdtlfdha pdklsvvkks litfvnkhln klnlevtele tqfadgvylv llmglledyf
      301 vplhnfyltp esfdqkvhnv sfafelmqdg glkkpkarpe dvvsldlkst lrvlynlftk
      361 yknve
//
LOCUS       XP_009568378             339 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-parvin isoform X2 [Cuculus canorus].
ACCESSION   XP_009568378
VERSION     XP_009568378.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009570083.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..339
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..339
                     /product="beta-parvin isoform X2"
                     /calculated_mol_wt=38832
     Region          63..168
                     /region_name="CH_PARVB_rpt1"
                     /note="first calponin homology (CH) domain found in
                     beta-parvin; cd21336"
                     /db_xref="CDD:409185"
     Site            order(64,68,119,121..122,125..126,128,140..148,153,
                     155..156,158..159,162..163,166)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409185"
     Region          210..339
                     /region_name="CH_PARVB_rpt2"
                     /note="second calponin homology (CH) domain found in
                     beta-parvin; cd21338"
                     /db_xref="CDD:409187"
     Site            order(231,235,289,291..292,295..296,298,307..315,320,
                     322..323,325..326,329..330,333)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409187"
     CDS             1..339
                     /gene="LOC104067348"
                     /coded_by="XM_009570083.2:117..1136"
                     /db_xref="GeneID:104067348"
ORIGIN      
        1 magllckrhk kgvsdlqeeg knainapmnp savdihpedt lleeneertm idpnskedpk
       61 fkelikvlid windvlveer iivkqleedl ydgqvlqkll ekmanrklnv aevtqseigq
      121 kqklqtvlea vhdllrphgw tikwnvdsih gknlisilhl lvalamhfra pirlpehvsv
      181 qvvvvrkreg llqtthvtee lttttemmmg rferdafdtl fdhapdklsv vkkslitfvn
      241 khlnklnlev teletqfadg vylvllmgll edyfvplhnf yltpesfdqk vhnvsfafel
      301 mqdgglkkpk arpedvvsld lkstlrvlyn lftkyknve
//
LOCUS       XP_053942941             327 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-parvin isoform X3 [Cuculus canorus].
ACCESSION   XP_053942941
VERSION     XP_053942941.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086966.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..327
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..327
                     /product="beta-parvin isoform X3"
                     /calculated_mol_wt=37540
     Region          51..156
                     /region_name="CH_PARVB_rpt1"
                     /note="first calponin homology (CH) domain found in
                     beta-parvin; cd21336"
                     /db_xref="CDD:409185"
     Site            order(52,56,107,109..110,113..114,116,128..136,141,
                     143..144,146..147,150..151,154)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409185"
     Region          198..327
                     /region_name="CH_PARVB_rpt2"
                     /note="second calponin homology (CH) domain found in
                     beta-parvin; cd21338"
                     /db_xref="CDD:409187"
     Site            order(219,223,277,279..280,283..284,286,295..303,308,
                     310..311,313..314,317..318,321)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409187"
     CDS             1..327
                     /gene="LOC104067348"
                     /coded_by="XM_054086966.1:34..1017"
                     /db_xref="GeneID:104067348"
ORIGIN      
        1 msdlqeegkn ainapmnpsa vdihpedtll eeneertmid pnskedpkfk elikvlidwi
       61 ndvlveerii vkqleedlyd gqvlqkllek manrklnvae vtqseigqkq klqtvleavh
      121 dllrphgwti kwnvdsihgk nlisilhllv alamhfrapi rlpehvsvqv vvvrkregll
      181 qtthvteelt tttemmmgrf erdafdtlfd hapdklsvvk kslitfvnkh lnklnlevte
      241 letqfadgvy lvllmglled yfvplhnfyl tpesfdqkvh nvsfafelmq dgglkkpkar
      301 pedvvsldlk stlrvlynlf tkyknve
//
LOCUS       XP_053942952             312 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-parvin isoform X4 [Cuculus canorus].
ACCESSION   XP_053942952
VERSION     XP_053942952.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086977.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..312
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..312
                     /product="beta-parvin isoform X4"
                     /calculated_mol_wt=35942
     Region          36..141
                     /region_name="CH_PARVB_rpt1"
                     /note="first calponin homology (CH) domain found in
                     beta-parvin; cd21336"
                     /db_xref="CDD:409185"
     Site            order(37,41,92,94..95,98..99,101,113..121,126,128..129,
                     131..132,135..136,139)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409185"
     Region          183..312
                     /region_name="CH_PARVB_rpt2"
                     /note="second calponin homology (CH) domain found in
                     beta-parvin; cd21338"
                     /db_xref="CDD:409187"
     Site            order(204,208,262,264..265,268..269,271,280..288,293,
                     295..296,298..299,302..303,306)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409187"
     CDS             1..312
                     /gene="LOC104067348"
                     /coded_by="XM_054086977.1:83..1021"
                     /db_xref="GeneID:104067348"
ORIGIN      
        1 mnpsavdihp edtlleenee rtmidpnske dpkfkelikv lidwindvlv eeriivkqle
       61 edlydgqvlq kllekmanrk lnvaevtqse igqkqklqtv leavhdllrp hgwtikwnvd
      121 sihgknlisi lhllvalamh frapirlpeh vsvqvvvvrk regllqtthv teelttttem
      181 mmgrferdaf dtlfdhapdk lsvvkkslit fvnkhlnkln levteletqf adgvylvllm
      241 glledyfvpl hnfyltpesf dqkvhnvsfa felmqdgglk kpkarpedvv sldlkstlrv
      301 lynlftkykn ve
//
LOCUS       XP_053942961             518 aa            linear   VRT 09-MAR-2023
DEFINITION  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053942961
VERSION     XP_053942961.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086986.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..518
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..518
                     /product="high affinity cGMP-specific 3',5'-cyclic
                     phosphodiesterase 9A isoform X1"
                     /calculated_mol_wt=60086
     Region          251..479
                     /region_name="PDEase_I"
                     /note="3'5'-cyclic nucleotide phosphodiesterase;
                     pfam00233"
                     /db_xref="CDD:459723"
     CDS             1..518
                     /gene="PDE9A"
                     /coded_by="XM_054086986.1:175..1731"
                     /db_xref="GeneID:104059238"
ORIGIN      
        1 mgsasstyrp kciyldidgr iqkvifskyc nskdimdlfc iatglprntt islltadncm
       61 vsidptmpan serspykvip vasgqlseke elfqnllgqi aeqfsrvfki nelktevanh
      121 lamlekkvel eglkvveiek cksdikkmre emaarssrtn cpckysflde nkrltprrdv
      181 psypkymlsq etiealrkpt fdvwlwepne mlsclehmyh dlglvkdfni npitlkrwll
      241 cihdnyrnnp fhnfrhcfcv tqmmysmisl cslqekfsqi dililmtaav chdldhpgyn
      301 ntyqinarte lavryndisp lenhhcavaf qiisqpeyni fsnvnqdqfk qirqgiitli
      361 latdmarhae ildsfkekme nfdysneehm tclkmvlikc cdisnevrpm evaepwvdcl
      421 leeyfmqsdr ekseglpvap fmdrdkvtkp taqigflkfv lipmfetvtk lfpeveevml
      481 qplwesrdry eelkqiddam kelqkkkses lttssaek
//
LOCUS       XP_053942966             477 aa            linear   VRT 09-MAR-2023
DEFINITION  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A
            isoform X2 [Cuculus canorus].
ACCESSION   XP_053942966
VERSION     XP_053942966.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086991.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..477
                     /product="high affinity cGMP-specific 3',5'-cyclic
                     phosphodiesterase 9A isoform X2"
                     /calculated_mol_wt=55590
     Region          210..438
                     /region_name="PDEase_I"
                     /note="3'5'-cyclic nucleotide phosphodiesterase;
                     pfam00233"
                     /db_xref="CDD:459723"
     CDS             1..477
                     /gene="PDE9A"
                     /coded_by="XM_054086991.1:226..1659"
                     /db_xref="GeneID:104059238"
ORIGIN      
        1 mdefkrntti slltadncmv sidptmpans erspykvipv asgqlsekee lfqnllgqia
       61 eqfsrvfkin elktevanhl amlekkvele glkvveiekc ksdikkmree maarssrtnc
      121 pckysflden krltprrdvp sypkymlsqe tiealrkptf dvwlwepnem lsclehmyhd
      181 lglvkdfnin pitlkrwllc ihdnyrnnpf hnfrhcfcvt qmmysmislc slqekfsqid
      241 ililmtaavc hdldhpgynn tyqinartel avryndispl enhhcavafq iisqpeynif
      301 snvnqdqfkq irqgiitlil atdmarhaei ldsfkekmen fdysneehmt clkmvlikcc
      361 disnevrpme vaepwvdcll eeyfmqsdre kseglpvapf mdrdkvtkpt aqigflkfvl
      421 ipmfetvtkl fpeveevmlq plwesrdrye elkqiddamk elqkkksesl ttssaek
//
LOCUS       XP_053942974             408 aa            linear   VRT 09-MAR-2023
DEFINITION  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A
            isoform X3 [Cuculus canorus].
ACCESSION   XP_053942974
VERSION     XP_053942974.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054086999.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..408
                     /product="high affinity cGMP-specific 3',5'-cyclic
                     phosphodiesterase 9A isoform X3"
                     /calculated_mol_wt=48002
     Region          141..369
                     /region_name="PDEase_I"
                     /note="3'5'-cyclic nucleotide phosphodiesterase;
                     pfam00233"
                     /db_xref="CDD:459723"
     CDS             1..408
                     /gene="PDE9A"
                     /coded_by="XM_054086999.1:170..1396"
                     /db_xref="GeneID:104059238"
ORIGIN      
        1 mrkkncsriy wdrlpnssqv eglkvveiek cksdikkmre emaarssrtn cpckysflde
       61 nkrltprrdv psypkymlsq etiealrkpt fdvwlwepne mlsclehmyh dlglvkdfni
      121 npitlkrwll cihdnyrnnp fhnfrhcfcv tqmmysmisl cslqekfsqi dililmtaav
      181 chdldhpgyn ntyqinarte lavryndisp lenhhcavaf qiisqpeyni fsnvnqdqfk
      241 qirqgiitli latdmarhae ildsfkekme nfdysneehm tclkmvlikc cdisnevrpm
      301 evaepwvdcl leeyfmqsdr ekseglpvap fmdrdkvtkp taqigflkfv lipmfetvtk
      361 lfpeveevml qplwesrdry eelkqiddam kelqkkkses lttssaek
//
LOCUS       XP_053942983             396 aa            linear   VRT 09-MAR-2023
DEFINITION  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A
            isoform X4 [Cuculus canorus].
ACCESSION   XP_053942983
VERSION     XP_053942983.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087008.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..396
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..396
                     /product="high affinity cGMP-specific 3',5'-cyclic
                     phosphodiesterase 9A isoform X4"
                     /calculated_mol_wt=46509
     Region          129..357
                     /region_name="PDEase_I"
                     /note="3'5'-cyclic nucleotide phosphodiesterase;
                     pfam00233"
                     /db_xref="CDD:459723"
     CDS             1..396
                     /gene="PDE9A"
                     /coded_by="XM_054087008.1:277..1467"
                     /db_xref="GeneID:104059238"
ORIGIN      
        1 mlekkveleg lkvveiekck sdikkmreem aarssrtncp ckysfldenk rltprrdvps
       61 ypkymlsqet iealrkptfd vwlwepneml sclehmyhdl glvkdfninp itlkrwllci
      121 hdnyrnnpfh nfrhcfcvtq mmysmislcs lqekfsqidi lilmtaavch dldhpgynnt
      181 yqinartela vryndisple nhhcavafqi isqpeynifs nvnqdqfkqi rqgiitlila
      241 tdmarhaeil dsfkekmenf dysneehmtc lkmvlikccd isnevrpmev aepwvdclle
      301 eyfmqsdrek seglpvapfm drdkvtkpta qigflkfvli pmfetvtklf peveevmlqp
      361 lwesrdryee lkqiddamke lqkkkseslt tssaek
//
LOCUS       XP_053942992             396 aa            linear   VRT 09-MAR-2023
DEFINITION  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A
            isoform X4 [Cuculus canorus].
ACCESSION   XP_053942992
VERSION     XP_053942992.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087017.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..396
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..396
                     /product="high affinity cGMP-specific 3',5'-cyclic
                     phosphodiesterase 9A isoform X4"
                     /calculated_mol_wt=46509
     Region          129..357
                     /region_name="PDEase_I"
                     /note="3'5'-cyclic nucleotide phosphodiesterase;
                     pfam00233"
                     /db_xref="CDD:459723"
     CDS             1..396
                     /gene="PDE9A"
                     /coded_by="XM_054087017.1:461..1651"
                     /db_xref="GeneID:104059238"
ORIGIN      
        1 mlekkveleg lkvveiekck sdikkmreem aarssrtncp ckysfldenk rltprrdvps
       61 ypkymlsqet iealrkptfd vwlwepneml sclehmyhdl glvkdfninp itlkrwllci
      121 hdnyrnnpfh nfrhcfcvtq mmysmislcs lqekfsqidi lilmtaavch dldhpgynnt
      181 yqinartela vryndisple nhhcavafqi isqpeynifs nvnqdqfkqi rqgiitlila
      241 tdmarhaeil dsfkekmenf dysneehmtc lkmvlikccd isnevrpmev aepwvdclle
      301 eyfmqsdrek seglpvapfm drdkvtkpta qigflkfvli pmfetvtklf peveevmlqp
      361 lwesrdryee lkqiddamke lqkkkseslt tssaek
//
LOCUS       XP_053943000             393 aa            linear   VRT 09-MAR-2023
DEFINITION  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A
            isoform X5 [Cuculus canorus].
ACCESSION   XP_053943000
VERSION     XP_053943000.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087025.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..393
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..393
                     /product="high affinity cGMP-specific 3',5'-cyclic
                     phosphodiesterase 9A isoform X5"
                     /calculated_mol_wt=46056
     Region          126..354
                     /region_name="PDEase_I"
                     /note="3'5'-cyclic nucleotide phosphodiesterase;
                     pfam00233"
                     /db_xref="CDD:459723"
     CDS             1..393
                     /gene="PDE9A"
                     /coded_by="XM_054087025.1:372..1553"
                     /db_xref="GeneID:104059238"
ORIGIN      
        1 mgcqveglkv veiekcksdi kkmreemaar ssrtncpcky sfldenkrlt prrdvpsypk
       61 ymlsqetiea lrkptfdvwl wepnemlscl ehmyhdlglv kdfninpitl krwllcihdn
      121 yrnnpfhnfr hcfcvtqmmy smislcslqe kfsqidilil mtaavchdld hpgynntyqi
      181 nartelavry ndisplenhh cavafqiisq peynifsnvn qdqfkqirqg iitlilatdm
      241 arhaeildsf kekmenfdys neehmtclkm vlikccdisn evrpmevaep wvdclleeyf
      301 mqsdrekseg lpvapfmdrd kvtkptaqig flkfvlipmf etvtklfpev eevmlqplwe
      361 srdryeelkq iddamkelqk kkseslttss aek
//
LOCUS       XP_053943009             371 aa            linear   VRT 09-MAR-2023
DEFINITION  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A
            isoform X6 [Cuculus canorus].
ACCESSION   XP_053943009
VERSION     XP_053943009.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087034.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..371
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..371
                     /product="high affinity cGMP-specific 3',5'-cyclic
                     phosphodiesterase 9A isoform X6"
                     /calculated_mol_wt=43609
     Region          104..332
                     /region_name="PDEase_I"
                     /note="3'5'-cyclic nucleotide phosphodiesterase;
                     pfam00233"
                     /db_xref="CDD:459723"
     CDS             1..371
                     /gene="PDE9A"
                     /coded_by="XM_054087034.1:465..1580"
                     /db_xref="GeneID:104059238"
ORIGIN      
        1 mreemaarss rtncpckysf ldenkrltpr rdvpsypkym lsqetiealr kptfdvwlwe
       61 pnemlscleh myhdlglvkd fninpitlkr wllcihdnyr nnpfhnfrhc fcvtqmmysm
      121 islcslqekf sqidililmt aavchdldhp gynntyqina rtelavrynd isplenhhca
      181 vafqiisqpe ynifsnvnqd qfkqirqgii tlilatdmar haeildsfke kmenfdysne
      241 ehmtclkmvl ikccdisnev rpmevaepwv dclleeyfmq sdrekseglp vapfmdrdkv
      301 tkptaqigfl kfvlipmfet vtklfpevee vmlqplwesr dryeelkqid damkelqkkk
      361 seslttssae k
//
LOCUS       XP_009555571             314 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: olfactory receptor 52R1-like [Cuculus
            canorus].
ACCESSION   XP_009555571
VERSION     XP_009555571.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557276.2
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555571.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 3 indels
            internal stop codons :: corrected 1 genomic stop codons
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..314
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..314
                     /product="LOW QUALITY PROTEIN: olfactory receptor
                     52R1-like"
                     /calculated_mol_wt=34750
     Region          27..301
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          29..53
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          62..84
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          100..122
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          145..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          195..218
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          237..259
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          270..298
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..314
                     /gene="LOC104056065"
                     /coded_by="XM_009557276.2:20..964"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons;
                     deleted 1 base in 1 codon; substituted 1 base at 1 genomic
                     stop codon"
                     /db_xref="GeneID:104056065"
ORIGIN      
        1 mslnstvlah spyflvtgip glekeqfwfv fpfcimyait llenitlsli ikaemisyep
       61 tylflamvaf tdpvlstsml pkmlgifwlg sgevdftscl aqfffihifl svesgvlmam
      121 aldcyiairc llrhssilpv pvvvatgslv lvllvslacf flhrmlfcqh hinshsygeh
      181 mavvklacgd trvnalcglf masfltgsdv ilislsyttt lxvvmrlsst eaxhkafstc
      241 ashvwvilvf yvtalftflt hxygqgilhh ihiqvanlyl lclplpppsn pfvygvrnkk
      301 irdrvvlffq qkrt
//
LOCUS       XP_053943025             188 aa            linear   VRT 09-MAR-2023
DEFINITION  achaete-scute homolog 4 [Cuculus canorus].
ACCESSION   XP_053943025
VERSION     XP_053943025.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087050.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..188
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..188
                     /product="achaete-scute homolog 4"
                     /calculated_mol_wt=20990
     Region          73..136
                     /region_name="bHLH_TS_ASCL4"
                     /note="basic helix-loop-helix (bHLH) domain found in
                     achaete-scute-like protein 4 (ASCL-4) and similar
                     proteins; cd19746"
                     /db_xref="CDD:381589"
     Site            order(81,85,87..89,91,96,114..117)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381589"
     Site            order(94..95,98..99,101..102,118,121,125,127..128,132,
                     134..135)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381589"
     CDS             1..188
                     /gene="ASCL4"
                     /coded_by="XM_054087050.1:559..1125"
                     /db_xref="GeneID:104056341"
ORIGIN      
        1 mgsnkdddgl lnriafpgav slanshvhph gvplrepfgv pfqldpsywe qaygshtgri
       61 syipfpgyvg vydysfepaf irkrnererq rvrcvnegyt rlrehlpkef adkrlskvet
      121 lraaisyikh lqslldchpl gsnsketlsa relpeapspg psrecysdge sktssasspy
      181 sefeetgt
//
LOCUS       XP_009561689             331 aa            linear   VRT 09-MAR-2023
DEFINITION  nucleotide sugar transporter SLC35B4 [Cuculus canorus].
ACCESSION   XP_009561689
VERSION     XP_009561689.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563394.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..331
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..331
                     /product="nucleotide sugar transporter SLC35B4"
                     /calculated_mol_wt=37404
     Region          3..314
                     /region_name="UAA"
                     /note="UAA transporter family; pfam08449"
                     /db_xref="CDD:462479"
     CDS             1..331
                     /gene="SLC35B4"
                     /coded_by="XM_009563394.2:146..1141"
                     /db_xref="GeneID:104061447"
ORIGIN      
        1 mhpavavglv fggccsnvvf lellarqfpg cgnivtfsqf lfiavegfif eanfgrkkpa
       61 ipiryyfimv amfftvsvvn nyalnlniam plhmifrsgs liasmalgii ilkkrysiyk
      121 ytsialvslg iftctfmsak qvasdsslne edglqvflww llgiaaltfa llmsarmgif
      181 qemlykqfgk hskealfynh alplpgflll apniyhhavl fsqsepfqvp vigltlpimw
      241 fyllmnvitq yvcirgvfil ttectsltvt lvvtlrkfvs lifsilyfrn pftawhwlgt
      301 afvfvgtlmy tevwnslgpf larwkkrpke e
//
LOCUS       XP_053943051             392 aa            linear   VRT 09-MAR-2023
DEFINITION  protein O-glucosyltransferase 1 [Cuculus canorus].
ACCESSION   XP_053943051
VERSION     XP_053943051.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087076.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..392
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..392
                     /product="protein O-glucosyltransferase 1"
                     /calculated_mol_wt=45180
     Region          49..388
                     /region_name="Glyco_transf_90"
                     /note="Glycosyl transferase family 90; cl23835"
                     /db_xref="CDD:329112"
     CDS             1..392
                     /gene="POGLUT1"
                     /coded_by="XM_054087076.1:69..1247"
                     /db_xref="GeneID:104056026"
ORIGIN      
        1 mgraglalwa laaaaacrlg palaggaada kwktitdqik eavevykpcv kencschqsv
       61 wkqdlapfrs giskevisdv vsrklgthyq iiknklyreq dclfparcsg vehfllgiin
      121 rlpdmemvin vrdypqvpkw mkpiipvfsf sktsdyndim ypawtfwegg pavwpiyptg
      181 lgrwdlmred lrrsaekwpw tkkiskgyfr gsrtsperdp lillsredpe lvdaeytknq
      241 awksekdtlg kppakevplv dhckykylfn frgvaasfrl khlflcgslv fhvgeewlef
      301 fypqlkpwvh yipvqsdlsd vrellqfake ndaiaqeise rgrqfiiehl qmedvscywe
      361 hllseysqal tykvkrrksy seitsgqlkt el
//
LOCUS       XP_053943069             924 aa            linear   VRT 09-MAR-2023
DEFINITION  TRPM8 channel-associated factor 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053943069
VERSION     XP_053943069.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087094.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..924
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..924
                     /product="TRPM8 channel-associated factor 2 isoform X1"
                     /calculated_mol_wt=102548
     Region          537..639
                     /region_name="M60-like_N"
                     /note="N-terminal domain of M60-like peptidases;
                     pfam17291"
                     /db_xref="CDD:435844"
     Region          641..897
                     /region_name="Peptidase_M60"
                     /note="Peptidase M60, enhancin and enhancin-like;
                     pfam13402"
                     /db_xref="CDD:433178"
     CDS             1..924
                     /gene="TCAF2"
                     /coded_by="XM_054087094.1:1439..4213"
                     /db_xref="GeneID:104060641"
ORIGIN      
        1 mkasdeteev srdrsdpkmi psatyellvd gvgpwdftgg fvpcelllvg ehaypvlvss
       61 kkqvliavsq ygkgrmvvvs hegilkdskf sqflrnavew lkpspealvg vhphldslsq
      121 mllradaevh agaelspslg vycmdaydsr qakelvgfvk egggllvggq awhwasqhgk
      181 ekvlfefpgn qvtsvagiyf tgntvekgif kvakkvpkmp livrhqanlr ldaefllrgv
      241 peldlvtggm psillvhgll sfplcldssh hcllaaahyg rgrvvvathe sqlcspklar
      301 fllnavrwld agrqgvvgva aslkklysll sqegvksqvs qltgdisvyc cssygdreae
      361 rihafvaegg glliggqawy wasqnrgkaa vakypgnkil npfglsilgq rvqaakhpav
      421 gpgehyhfrk altlfnrhvd mheelkdplk nwlqrltedc aaflhipahd cpayaslhri
      481 ltktlkrsgi phvsrycpvk snskeavllc matelsltmt dsatlvqkpa vgvcafpitv
      541 eidstnpgkt swrstglylp eghtavitfp cvvvgaglkv qigchtddls harelkrapv
      601 virtcdiacq kqsvsclwgg liyiivpars ilgkvpitie gavrapffkl getcesqwkd
      661 cirhhpapwa elavenlilt vpsdtirhme dpqplltlwn eimvaiskla aiptkfprpe
      721 rivtdvqisc gwmhagypim ghidsvkeml dmkhmqtagl wgpihelghn qqqqawefpp
      781 htteatcnlw svyvheevlg iprhkahqal rsqcreerir qylkkgaqlk dwemwtalet
      841 ylqlqegfgw dpfthlfsdy qkmstipkdk sskmnlwaqk fsqqvnknla pfftswgwpi
      901 kkklsvelss lpnweqdpmk syrp
//
LOCUS       XP_053943076             913 aa            linear   VRT 09-MAR-2023
DEFINITION  TRPM8 channel-associated factor 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053943076
VERSION     XP_053943076.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087101.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..913
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..913
                     /product="TRPM8 channel-associated factor 2 isoform X2"
                     /calculated_mol_wt=101316
     Region          526..628
                     /region_name="M60-like_N"
                     /note="N-terminal domain of M60-like peptidases;
                     pfam17291"
                     /db_xref="CDD:435844"
     Region          630..886
                     /region_name="Peptidase_M60"
                     /note="Peptidase M60, enhancin and enhancin-like;
                     pfam13402"
                     /db_xref="CDD:433178"
     CDS             1..913
                     /gene="TCAF2"
                     /coded_by="XM_054087101.1:198..2939"
                     /db_xref="GeneID:104060641"
ORIGIN      
        1 mdrsdpkmip satyellvdg vgpwdftggf vpcelllvge haypvlvssk kqvliavsqy
       61 gkgrmvvvsh egilkdskfs qflrnavewl kpspealvgv hphldslsqm llradaevha
      121 gaelspslgv ycmdaydsrq akelvgfvke gggllvggqa whwasqhgke kvlfefpgnq
      181 vtsvagiyft gntvekgifk vakkvpkmpl ivrhqanlrl daefllrgvp eldlvtggmp
      241 sillvhglls fplcldsshh cllaaahygr grvvvathes qlcspklarf llnavrwlda
      301 grqgvvgvaa slkklyslls qegvksqvsq ltgdisvycc ssygdreaer ihafvaeggg
      361 lliggqawyw asqnrgkaav akypgnkiln pfglsilgqr vqaakhpavg pgehyhfrka
      421 ltlfnrhvdm heelkdplkn wlqrltedca aflhipahdc payaslhril tktlkrsgip
      481 hvsrycpvks nskeavllcm atelsltmtd satlvqkpav gvcafpitve idstnpgkts
      541 wrstglylpe ghtavitfpc vvvgaglkvq igchtddlsh arelkrapvv irtcdiacqk
      601 qsvsclwggl iyiivparsi lgkvpitieg avrapffklg etcesqwkdc irhhpapwae
      661 lavenliltv psdtirhmed pqplltlwne imvaisklaa iptkfprper ivtdvqiscg
      721 wmhagypimg hidsvkemld mkhmqtaglw gpihelghnq qqqawefpph tteatcnlws
      781 vyvheevlgi prhkahqalr sqcreerirq ylkkgaqlkd wemwtalety lqlqegfgwd
      841 pfthlfsdyq kmstipkdks skmnlwaqkf sqqvnknlap fftswgwpik kklsvelssl
      901 pnweqdpmks yrp
//
LOCUS       XP_053943084             906 aa            linear   VRT 09-MAR-2023
DEFINITION  TRPM8 channel-associated factor 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053943084
VERSION     XP_053943084.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087109.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..906
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..906
                     /product="TRPM8 channel-associated factor 2 isoform X3"
                     /calculated_mol_wt=100486
     Region          519..621
                     /region_name="M60-like_N"
                     /note="N-terminal domain of M60-like peptidases;
                     pfam17291"
                     /db_xref="CDD:435844"
     Region          623..879
                     /region_name="Peptidase_M60"
                     /note="Peptidase M60, enhancin and enhancin-like;
                     pfam13402"
                     /db_xref="CDD:433178"
     CDS             1..906
                     /gene="TCAF2"
                     /coded_by="XM_054087109.1:228..2948"
                     /db_xref="GeneID:104060641"
ORIGIN      
        1 mipsatyell vdgvgpwdft ggfvpcelll vgehaypvlv sskkqvliav sqygkgrmvv
       61 vshegilkds kfsqflrnav ewlkpspeal vgvhphldsl sqmllradae vhagaelsps
      121 lgvycmdayd srqakelvgf vkegggllvg gqawhwasqh gkekvlfefp gnqvtsvagi
      181 yftgntvekg ifkvakkvpk mplivrhqan lrldaefllr gvpeldlvtg gmpsillvhg
      241 llsfplclds shhcllaaah ygrgrvvvat hesqlcspkl arfllnavrw ldagrqgvvg
      301 vaaslkklys llsqegvksq vsqltgdisv yccssygdre aerihafvae ggglliggqa
      361 wywasqnrgk aavakypgnk ilnpfglsil gqrvqaakhp avgpgehyhf rkaltlfnrh
      421 vdmheelkdp lknwlqrlte dcaaflhipa hdcpayaslh riltktlkrs giphvsrycp
      481 vksnskeavl lcmatelslt mtdsatlvqk pavgvcafpi tveidstnpg ktswrstgly
      541 lpeghtavit fpcvvvgagl kvqigchtdd lsharelkra pvvirtcdia cqkqsvsclw
      601 ggliyiivpa rsilgkvpit iegavrapff klgetcesqw kdcirhhpap waelavenli
      661 ltvpsdtirh medpqplltl wneimvaisk laaiptkfpr perivtdvqi scgwmhagyp
      721 imghidsvke mldmkhmqta glwgpihelg hnqqqqawef pphtteatcn lwsvyvheev
      781 lgiprhkahq alrsqcreer irqylkkgaq lkdwemwtal etylqlqegf gwdpfthlfs
      841 dyqkmstipk dksskmnlwa qkfsqqvnkn lapfftswgw pikkklsvel sslpnweqdp
      901 mksyrp
//
LOCUS       XP_053943090             906 aa            linear   VRT 09-MAR-2023
DEFINITION  TRPM8 channel-associated factor 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053943090
VERSION     XP_053943090.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087115.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..906
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..906
                     /product="TRPM8 channel-associated factor 2 isoform X3"
                     /calculated_mol_wt=100486
     Region          519..621
                     /region_name="M60-like_N"
                     /note="N-terminal domain of M60-like peptidases;
                     pfam17291"
                     /db_xref="CDD:435844"
     Region          623..879
                     /region_name="Peptidase_M60"
                     /note="Peptidase M60, enhancin and enhancin-like;
                     pfam13402"
                     /db_xref="CDD:433178"
     CDS             1..906
                     /gene="TCAF2"
                     /coded_by="XM_054087115.1:208..2928"
                     /db_xref="GeneID:104060641"
ORIGIN      
        1 mipsatyell vdgvgpwdft ggfvpcelll vgehaypvlv sskkqvliav sqygkgrmvv
       61 vshegilkds kfsqflrnav ewlkpspeal vgvhphldsl sqmllradae vhagaelsps
      121 lgvycmdayd srqakelvgf vkegggllvg gqawhwasqh gkekvlfefp gnqvtsvagi
      181 yftgntvekg ifkvakkvpk mplivrhqan lrldaefllr gvpeldlvtg gmpsillvhg
      241 llsfplclds shhcllaaah ygrgrvvvat hesqlcspkl arfllnavrw ldagrqgvvg
      301 vaaslkklys llsqegvksq vsqltgdisv yccssygdre aerihafvae ggglliggqa
      361 wywasqnrgk aavakypgnk ilnpfglsil gqrvqaakhp avgpgehyhf rkaltlfnrh
      421 vdmheelkdp lknwlqrlte dcaaflhipa hdcpayaslh riltktlkrs giphvsrycp
      481 vksnskeavl lcmatelslt mtdsatlvqk pavgvcafpi tveidstnpg ktswrstgly
      541 lpeghtavit fpcvvvgagl kvqigchtdd lsharelkra pvvirtcdia cqkqsvsclw
      601 ggliyiivpa rsilgkvpit iegavrapff klgetcesqw kdcirhhpap waelavenli
      661 ltvpsdtirh medpqplltl wneimvaisk laaiptkfpr perivtdvqi scgwmhagyp
      721 imghidsvke mldmkhmqta glwgpihelg hnqqqqawef pphtteatcn lwsvyvheev
      781 lgiprhkahq alrsqcreer irqylkkgaq lkdwemwtal etylqlqegf gwdpfthlfs
      841 dyqkmstipk dksskmnlwa qkfsqqvnkn lapfftswgw pikkklsvel sslpnweqdp
      901 mksyrp
//
LOCUS       XP_053943098             906 aa            linear   VRT 09-MAR-2023
DEFINITION  TRPM8 channel-associated factor 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053943098
VERSION     XP_053943098.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087123.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..906
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..906
                     /product="TRPM8 channel-associated factor 2 isoform X3"
                     /calculated_mol_wt=100486
     Region          519..621
                     /region_name="M60-like_N"
                     /note="N-terminal domain of M60-like peptidases;
                     pfam17291"
                     /db_xref="CDD:435844"
     Region          623..879
                     /region_name="Peptidase_M60"
                     /note="Peptidase M60, enhancin and enhancin-like;
                     pfam13402"
                     /db_xref="CDD:433178"
     CDS             1..906
                     /gene="TCAF2"
                     /coded_by="XM_054087123.1:334..3054"
                     /db_xref="GeneID:104060641"
ORIGIN      
        1 mipsatyell vdgvgpwdft ggfvpcelll vgehaypvlv sskkqvliav sqygkgrmvv
       61 vshegilkds kfsqflrnav ewlkpspeal vgvhphldsl sqmllradae vhagaelsps
      121 lgvycmdayd srqakelvgf vkegggllvg gqawhwasqh gkekvlfefp gnqvtsvagi
      181 yftgntvekg ifkvakkvpk mplivrhqan lrldaefllr gvpeldlvtg gmpsillvhg
      241 llsfplclds shhcllaaah ygrgrvvvat hesqlcspkl arfllnavrw ldagrqgvvg
      301 vaaslkklys llsqegvksq vsqltgdisv yccssygdre aerihafvae ggglliggqa
      361 wywasqnrgk aavakypgnk ilnpfglsil gqrvqaakhp avgpgehyhf rkaltlfnrh
      421 vdmheelkdp lknwlqrlte dcaaflhipa hdcpayaslh riltktlkrs giphvsrycp
      481 vksnskeavl lcmatelslt mtdsatlvqk pavgvcafpi tveidstnpg ktswrstgly
      541 lpeghtavit fpcvvvgagl kvqigchtdd lsharelkra pvvirtcdia cqkqsvsclw
      601 ggliyiivpa rsilgkvpit iegavrapff klgetcesqw kdcirhhpap waelavenli
      661 ltvpsdtirh medpqplltl wneimvaisk laaiptkfpr perivtdvqi scgwmhagyp
      721 imghidsvke mldmkhmqta glwgpihelg hnqqqqawef pphtteatcn lwsvyvheev
      781 lgiprhkahq alrsqcreer irqylkkgaq lkdwemwtal etylqlqegf gwdpfthlfs
      841 dyqkmstipk dksskmnlwa qkfsqqvnkn lapfftswgw pikkklsvel sslpnweqdp
      901 mksyrp
//
LOCUS       XP_053943109             906 aa            linear   VRT 09-MAR-2023
DEFINITION  TRPM8 channel-associated factor 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053943109
VERSION     XP_053943109.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087134.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..906
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..906
                     /product="TRPM8 channel-associated factor 2 isoform X3"
                     /calculated_mol_wt=100486
     Region          519..621
                     /region_name="M60-like_N"
                     /note="N-terminal domain of M60-like peptidases;
                     pfam17291"
                     /db_xref="CDD:435844"
     Region          623..879
                     /region_name="Peptidase_M60"
                     /note="Peptidase M60, enhancin and enhancin-like;
                     pfam13402"
                     /db_xref="CDD:433178"
     CDS             1..906
                     /gene="TCAF2"
                     /coded_by="XM_054087134.1:224..2944"
                     /db_xref="GeneID:104060641"
ORIGIN      
        1 mipsatyell vdgvgpwdft ggfvpcelll vgehaypvlv sskkqvliav sqygkgrmvv
       61 vshegilkds kfsqflrnav ewlkpspeal vgvhphldsl sqmllradae vhagaelsps
      121 lgvycmdayd srqakelvgf vkegggllvg gqawhwasqh gkekvlfefp gnqvtsvagi
      181 yftgntvekg ifkvakkvpk mplivrhqan lrldaefllr gvpeldlvtg gmpsillvhg
      241 llsfplclds shhcllaaah ygrgrvvvat hesqlcspkl arfllnavrw ldagrqgvvg
      301 vaaslkklys llsqegvksq vsqltgdisv yccssygdre aerihafvae ggglliggqa
      361 wywasqnrgk aavakypgnk ilnpfglsil gqrvqaakhp avgpgehyhf rkaltlfnrh
      421 vdmheelkdp lknwlqrlte dcaaflhipa hdcpayaslh riltktlkrs giphvsrycp
      481 vksnskeavl lcmatelslt mtdsatlvqk pavgvcafpi tveidstnpg ktswrstgly
      541 lpeghtavit fpcvvvgagl kvqigchtdd lsharelkra pvvirtcdia cqkqsvsclw
      601 ggliyiivpa rsilgkvpit iegavrapff klgetcesqw kdcirhhpap waelavenli
      661 ltvpsdtirh medpqplltl wneimvaisk laaiptkfpr perivtdvqi scgwmhagyp
      721 imghidsvke mldmkhmqta glwgpihelg hnqqqqawef pphtteatcn lwsvyvheev
      781 lgiprhkahq alrsqcreer irqylkkgaq lkdwemwtal etylqlqegf gwdpfthlfs
      841 dyqkmstipk dksskmnlwa qkfsqqvnkn lapfftswgw pikkklsvel sslpnweqdp
      901 mksyrp
//
LOCUS       XP_053943118             906 aa            linear   VRT 09-MAR-2023
DEFINITION  TRPM8 channel-associated factor 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053943118
VERSION     XP_053943118.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087143.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..906
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..906
                     /product="TRPM8 channel-associated factor 2 isoform X3"
                     /calculated_mol_wt=100486
     Region          519..621
                     /region_name="M60-like_N"
                     /note="N-terminal domain of M60-like peptidases;
                     pfam17291"
                     /db_xref="CDD:435844"
     Region          623..879
                     /region_name="Peptidase_M60"
                     /note="Peptidase M60, enhancin and enhancin-like;
                     pfam13402"
                     /db_xref="CDD:433178"
     CDS             1..906
                     /gene="TCAF2"
                     /coded_by="XM_054087143.1:295..3015"
                     /db_xref="GeneID:104060641"
ORIGIN      
        1 mipsatyell vdgvgpwdft ggfvpcelll vgehaypvlv sskkqvliav sqygkgrmvv
       61 vshegilkds kfsqflrnav ewlkpspeal vgvhphldsl sqmllradae vhagaelsps
      121 lgvycmdayd srqakelvgf vkegggllvg gqawhwasqh gkekvlfefp gnqvtsvagi
      181 yftgntvekg ifkvakkvpk mplivrhqan lrldaefllr gvpeldlvtg gmpsillvhg
      241 llsfplclds shhcllaaah ygrgrvvvat hesqlcspkl arfllnavrw ldagrqgvvg
      301 vaaslkklys llsqegvksq vsqltgdisv yccssygdre aerihafvae ggglliggqa
      361 wywasqnrgk aavakypgnk ilnpfglsil gqrvqaakhp avgpgehyhf rkaltlfnrh
      421 vdmheelkdp lknwlqrlte dcaaflhipa hdcpayaslh riltktlkrs giphvsrycp
      481 vksnskeavl lcmatelslt mtdsatlvqk pavgvcafpi tveidstnpg ktswrstgly
      541 lpeghtavit fpcvvvgagl kvqigchtdd lsharelkra pvvirtcdia cqkqsvsclw
      601 ggliyiivpa rsilgkvpit iegavrapff klgetcesqw kdcirhhpap waelavenli
      661 ltvpsdtirh medpqplltl wneimvaisk laaiptkfpr perivtdvqi scgwmhagyp
      721 imghidsvke mldmkhmqta glwgpihelg hnqqqqawef pphtteatcn lwsvyvheev
      781 lgiprhkahq alrsqcreer irqylkkgaq lkdwemwtal etylqlqegf gwdpfthlfs
      841 dyqkmstipk dksskmnlwa qkfsqqvnkn lapfftswgw pikkklsvel sslpnweqdp
      901 mksyrp
//
LOCUS       XP_053943125             906 aa            linear   VRT 09-MAR-2023
DEFINITION  TRPM8 channel-associated factor 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053943125
VERSION     XP_053943125.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087150.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..906
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..906
                     /product="TRPM8 channel-associated factor 2 isoform X3"
                     /calculated_mol_wt=100486
     Region          519..621
                     /region_name="M60-like_N"
                     /note="N-terminal domain of M60-like peptidases;
                     pfam17291"
                     /db_xref="CDD:435844"
     Region          623..879
                     /region_name="Peptidase_M60"
                     /note="Peptidase M60, enhancin and enhancin-like;
                     pfam13402"
                     /db_xref="CDD:433178"
     CDS             1..906
                     /gene="TCAF2"
                     /coded_by="XM_054087150.1:37..2757"
                     /db_xref="GeneID:104060641"
ORIGIN      
        1 mipsatyell vdgvgpwdft ggfvpcelll vgehaypvlv sskkqvliav sqygkgrmvv
       61 vshegilkds kfsqflrnav ewlkpspeal vgvhphldsl sqmllradae vhagaelsps
      121 lgvycmdayd srqakelvgf vkegggllvg gqawhwasqh gkekvlfefp gnqvtsvagi
      181 yftgntvekg ifkvakkvpk mplivrhqan lrldaefllr gvpeldlvtg gmpsillvhg
      241 llsfplclds shhcllaaah ygrgrvvvat hesqlcspkl arfllnavrw ldagrqgvvg
      301 vaaslkklys llsqegvksq vsqltgdisv yccssygdre aerihafvae ggglliggqa
      361 wywasqnrgk aavakypgnk ilnpfglsil gqrvqaakhp avgpgehyhf rkaltlfnrh
      421 vdmheelkdp lknwlqrlte dcaaflhipa hdcpayaslh riltktlkrs giphvsrycp
      481 vksnskeavl lcmatelslt mtdsatlvqk pavgvcafpi tveidstnpg ktswrstgly
      541 lpeghtavit fpcvvvgagl kvqigchtdd lsharelkra pvvirtcdia cqkqsvsclw
      601 ggliyiivpa rsilgkvpit iegavrapff klgetcesqw kdcirhhpap waelavenli
      661 ltvpsdtirh medpqplltl wneimvaisk laaiptkfpr perivtdvqi scgwmhagyp
      721 imghidsvke mldmkhmqta glwgpihelg hnqqqqawef pphtteatcn lwsvyvheev
      781 lgiprhkahq alrsqcreer irqylkkgaq lkdwemwtal etylqlqegf gwdpfthlfs
      841 dyqkmstipk dksskmnlwa qkfsqqvnkn lapfftswgw pikkklsvel sslpnweqdp
      901 mksyrp
//
LOCUS       XP_053943130             706 aa            linear   VRT 09-MAR-2023
DEFINITION  TRPM8 channel-associated factor 2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053943130
VERSION     XP_053943130.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087155.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..706
                     /product="TRPM8 channel-associated factor 2 isoform X4"
                     /calculated_mol_wt=78823
     Region          319..421
                     /region_name="M60-like_N"
                     /note="N-terminal domain of M60-like peptidases;
                     pfam17291"
                     /db_xref="CDD:435844"
     Region          423..679
                     /region_name="Peptidase_M60"
                     /note="Peptidase M60, enhancin and enhancin-like;
                     pfam13402"
                     /db_xref="CDD:433178"
     CDS             1..706
                     /gene="TCAF2"
                     /coded_by="XM_054087155.1:130..2250"
                     /db_xref="GeneID:104060641"
ORIGIN      
        1 mplivrhqan lrldaefllr gvpeldlvtg gmpsillvhg llsfplclds shhcllaaah
       61 ygrgrvvvat hesqlcspkl arfllnavrw ldagrqgvvg vaaslkklys llsqegvksq
      121 vsqltgdisv yccssygdre aerihafvae ggglliggqa wywasqnrgk aavakypgnk
      181 ilnpfglsil gqrvqaakhp avgpgehyhf rkaltlfnrh vdmheelkdp lknwlqrlte
      241 dcaaflhipa hdcpayaslh riltktlkrs giphvsrycp vksnskeavl lcmatelslt
      301 mtdsatlvqk pavgvcafpi tveidstnpg ktswrstgly lpeghtavit fpcvvvgagl
      361 kvqigchtdd lsharelkra pvvirtcdia cqkqsvsclw ggliyiivpa rsilgkvpit
      421 iegavrapff klgetcesqw kdcirhhpap waelavenli ltvpsdtirh medpqplltl
      481 wneimvaisk laaiptkfpr perivtdvqi scgwmhagyp imghidsvke mldmkhmqta
      541 glwgpihelg hnqqqqawef pphtteatcn lwsvyvheev lgiprhkahq alrsqcreer
      601 irqylkkgaq lkdwemwtal etylqlqegf gwdpfthlfs dyqkmstipk dksskmnlwa
      661 qkfsqqvnkn lapfftswgw pikkklsvel sslpnweqdp mksyrp
//
LOCUS       XP_053943143             460 aa            linear   VRT 09-MAR-2023
DEFINITION  KICSTOR complex protein ITFG2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053943143
VERSION     XP_053943143.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087168.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..460
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..460
                     /product="KICSTOR complex protein ITFG2 isoform X1"
                     /calculated_mol_wt=50329
     Region          22..>54
                     /region_name="BBS2_Mid"
                     /note="Ciliary BBSome complex subunit 2, middle region;
                     pfam14783"
                     /db_xref="CDD:405473"
     Region          49..384
                     /region_name="Itfg2"
                     /note="Integrin-alpha FG-GAP repeat-containing protein 2;
                     pfam15907"
                     /db_xref="CDD:464933"
     CDS             1..460
                     /gene="ITFG2"
                     /coded_by="XM_054087168.1:63..1445"
                     /db_xref="GeneID:104060643"
ORIGIN      
        1 mrsvsyvqrv aldfggslfp havclgdadn dalnelvvgd tngklyvykn ddskpwavrs
       61 cqgmltcvgv gdvcnkgknl vvavsaegwf hlfdlsppas khpdtsghhe laaaeeqkpv
      121 fkqhipantk vmlisdidgd gkcelvvgyt drvvrafrwe dlsessdhvs gqllllkkwl
      181 legqvdslsv npgpdgspqm mvsqpgcgya illctwdseq qaategrdss atsseapird
      241 vilhqtsgri hnqnvsthli gsirrgcsse nsgsglfalc tldgtlklme gadellwsvq
      301 vdhqlfalek lditgnghee viacawdgqt yiidhnrtva rfqadenvsa fcaglyackg
      361 gsnspclvyv sfnqkiyiyw dvqlermest nllkildrdp efgnllqqlg verddvsavk
      421 dlihktlyfp ekwqqsslsq cqdragtdss ahhsviqdpl
//
LOCUS       XP_053943148             431 aa            linear   VRT 09-MAR-2023
DEFINITION  KICSTOR complex protein ITFG2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053943148
VERSION     XP_053943148.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087173.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..431
                     /product="KICSTOR complex protein ITFG2 isoform X2"
                     /calculated_mol_wt=47309
     Region          20..355
                     /region_name="Itfg2"
                     /note="Integrin-alpha FG-GAP repeat-containing protein 2;
                     pfam15907"
                     /db_xref="CDD:464933"
     CDS             1..431
                     /gene="ITFG2"
                     /coded_by="XM_054087173.1:16..1311"
                     /db_xref="GeneID:104060643"
ORIGIN      
        1 mrslnelvvg dtngklyvyk nddskpwavr scqgmltcvg vgdvcnkgkn lvvavsaegw
       61 fhlfdlsppa skhpdtsghh elaaaeeqkp vfkqhipant kvmlisdidg dgkcelvvgy
      121 tdrvvrafrw edlsessdhv sgqllllkkw llegqvdsls vnpgpdgspq mmvsqpgcgy
      181 aillctwdse qqaategrds satsseapir dvilhqtsgr ihnqnvsthl igsirrgcss
      241 ensgsglfal ctldgtlklm egadellwsv qvdhqlfale klditgnghe eviacawdgq
      301 tyiidhnrtv arfqadenvs afcaglyack ggsnspclvy vsfnqkiyiy wdvqlermes
      361 tnllkildrd pefgnllqql gverddvsav kdlihktlyf pekwqqssls qcqdragtds
      421 sahhsviqdp l
//
LOCUS       XP_053943161             449 aa            linear   VRT 09-MAR-2023
DEFINITION  peptidyl-prolyl cis-trans isomerase FKBP4 [Cuculus canorus].
ACCESSION   XP_053943161
VERSION     XP_053943161.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087186.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..449
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..449
                     /product="peptidyl-prolyl cis-trans isomerase FKBP4"
                     /calculated_mol_wt=50763
     Region          36..127
                     /region_name="FKBP_C"
                     /note="FKBP-type peptidyl-prolyl cis-trans isomerase;
                     pfam00254"
                     /db_xref="CDD:459735"
     Region          158..>250
                     /region_name="SlpA"
                     /note="Peptidyl-prolyl cis-trans isomerase, FKBP type
                     [Posttranslational modification, protein turnover,
                     chaperones]; COG1047"
                     /db_xref="CDD:440668"
     Site            order(267..268,271..272,274,313,316..317,320..321,
                     323..324,347,350..351,354..355,358)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          267..306
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          <268..422
                     /region_name="NlpI"
                     /note="Lipoprotein NlpI, contains TPR repeats [Cell
                     wall/membrane/envelope biogenesis]; COG4785"
                     /db_xref="CDD:443815"
     Region          311..341
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          346..374
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          380..404
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..449
                     /gene="FKBP4"
                     /coded_by="XM_054087186.1:243..1592"
                     /db_xref="GeneID:104060642"
ORIGIN      
        1 mtaeemkadg aplegaditp krdegvlkvi kregsgtesp migdkvtvhy tgwlldgtkf
       61 dssldrkdkf sfdlgkgevi kawdiavatm kvgeicritc kpeyaygsag sppkippnat
      121 lifeielfef kgedltdded ggvirrirkk gegyskpneg alveiqfegr ygdrvfdrre
      181 lrfeigegdn ydlphgleka iqkmeklees vfylkpnygf gsagkekfqi ppdaelqyev
      241 klksfekake swemntdekl eqscivkerg tqyfkegkyk raslqykkiv swlehesgls
      301 deedtkaksl rlaahlnlam chlklkeysq avencnkale ldssnekglf rrgeahlavn
      361 dfelargdfq kviqlypsnk aakvqlvtcq qkireqheke kkmyanmfqr ladkdlksaa
      421 slqtshaeda emkdeqngve eksevdtea
//
LOCUS       XP_009560750             254 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear receptor-interacting protein 2 [Cuculus canorus].
ACCESSION   XP_009560750
VERSION     XP_009560750.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009562455.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..254
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..254
                     /product="nuclear receptor-interacting protein 2"
                     /calculated_mol_wt=28080
     Region          133..230
                     /region_name="pepsin_retropepsin_like"
                     /note="Cellular and retroviral pepsin-like aspartate
                     proteases; cl11403"
                     /db_xref="CDD:472175"
     Site            order(147,149,151,171..173,214)
                     /site_type="active"
                     /note="inhibitor binding site [active]"
                     /db_xref="CDD:133147"
     Site            147..149
                     /site_type="active"
                     /note="catalytic motif [active]"
                     /db_xref="CDD:133147"
     Site            147
                     /site_type="active"
                     /note="Catalytic residue [active]"
                     /db_xref="CDD:133147"
     Site            order(171..174,179..182)
                     /site_type="active"
                     /note="Active site flap [active]"
                     /db_xref="CDD:133147"
     CDS             1..254
                     /gene="NRIP2"
                     /coded_by="XM_009562455.2:403..1167"
                     /db_xref="GeneID:104060644"
ORIGIN      
        1 msikkscplp lgqgdreekq skgtpvpepq ecevelrnka ilqqkrrlkq atqfvhkdsa
       61 dllpldgltr lgtskdlqph svvqrrlleg nlnklrgetr vqsscvqspl ardqdekvek
      121 gedrrretsp lliqcqcqgq vlkatvntgc lpnliskscl nqlgleevsa mdcgdlslpi
      181 ptvvgrvehm klqfgqetvl csalvvddem lefciglqtl lslkccidle egvlrfkals
      241 qelpflhace epgq
//
LOCUS       XP_009564686             582 aa            linear   VRT 09-MAR-2023
DEFINITION  NADPH oxidase 4 isoform X1 [Cuculus canorus].
ACCESSION   XP_009564686
VERSION     XP_009564686.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566391.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564686.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..582
                     /product="NADPH oxidase 4 isoform X1"
                     /calculated_mol_wt=67401
     Region          <94..205
                     /region_name="Ferric_reduct"
                     /note="Ferric reductase like transmembrane component;
                     pfam01794"
                     /db_xref="CDD:426438"
     Region          315..581
                     /region_name="NOX_Duox_like_FAD_NADP"
                     /note="NADPH oxidase (NOX) catalyzes the generation of
                     reactive oxygen species (ROS) such as superoxide and
                     hydrogen peroxide. ROS were originally identified as
                     bactericidal agents in phagocytes, but are now also
                     implicated in cell signaling and metabolism. NOX...;
                     cd06186"
                     /db_xref="CDD:99783"
     Site            order(342,356..359,374..376,379..382,437)
                     /site_type="other"
                     /note="FAD binding pocket [chemical binding]"
                     /db_xref="CDD:99783"
     Site            order(356,358..359)
                     /site_type="other"
                     /note="FAD binding motif [chemical binding]"
                     /db_xref="CDD:99783"
     Site            432..442
                     /site_type="other"
                     /note="NAD pyrophosphate binding region [chemical
                     binding]"
                     /db_xref="CDD:99783"
     Site            order(432,436..439,441)
                     /site_type="other"
                     /note="beta-alpha-beta stucture motif"
                     /db_xref="CDD:99783"
     Site            order(437..438,466..468,552..553)
                     /site_type="other"
                     /note="NAD binding pocket [chemical binding]"
                     /db_xref="CDD:99783"
     Site            order(464..465,468)
                     /site_type="other"
                     /note="NADP ribose binding motif [chemical binding]"
                     /db_xref="CDD:99783"
     CDS             1..582
                     /gene="NOX4"
                     /coded_by="XM_009566391.2:85..1833"
                     /db_xref="GeneID:104064098"
ORIGIN      
        1 malswrswla negskhlflf fwlslnvwlf wktfllyyqg lqyyylhqml glglcisras
       61 asvlnlnccl vllpmcrvll aflrgsqkva skktrrlldk sktfhvtcgv ticifsvlhv
      121 aahlvnalnf senynedfla lnaanyrged prkllfatvp gltgvimvlv lflmctasty
      181 airvsnydif wythnlffvf ymllmlhvsg gvlkyqtnle ehppgcfnpn ktlqenmtvp
      241 tafeelfpgy ttepfpedls vpepfvqnnf mricsegpkf qshfpetwfw isgplclycm
      301 erlyryirsn kpvtitsvis hpsnvlevrm mkddfkarpg qyvilhcprv saleshpftl
      361 tmcptdtkat fgvhlkvvgd wterfrdlll lhsnqdteil pifqqrrypk lyvdgpfgsp
      421 feeslnyevs lcvaggigvt pfasilntll ddwkryklrr lyfiwvcrdi esfrwfadll
      481 cmlhdklwqe nrpdyvniql ylsqtdgmqk iigekyqaln srlligrpqw kllfgeiakc
      541 nrrktigvfc cgpnkiskil hklsnssnsy gtrfeynkes fs
//
LOCUS       XP_053943197             508 aa            linear   VRT 09-MAR-2023
DEFINITION  NADPH oxidase 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053943197
VERSION     XP_053943197.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087222.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..508
                     /product="NADPH oxidase 4 isoform X2"
                     /calculated_mol_wt=58652
     Region          <20..131
                     /region_name="Ferric_reduct"
                     /note="Ferric reductase like transmembrane component;
                     pfam01794"
                     /db_xref="CDD:426438"
     Region          241..507
                     /region_name="NOX_Duox_like_FAD_NADP"
                     /note="NADPH oxidase (NOX) catalyzes the generation of
                     reactive oxygen species (ROS) such as superoxide and
                     hydrogen peroxide. ROS were originally identified as
                     bactericidal agents in phagocytes, but are now also
                     implicated in cell signaling and metabolism. NOX...;
                     cd06186"
                     /db_xref="CDD:99783"
     Site            order(268,282..285,300..302,305..308,363)
                     /site_type="other"
                     /note="FAD binding pocket [chemical binding]"
                     /db_xref="CDD:99783"
     Site            order(282,284..285)
                     /site_type="other"
                     /note="FAD binding motif [chemical binding]"
                     /db_xref="CDD:99783"
     Site            358..368
                     /site_type="other"
                     /note="NAD pyrophosphate binding region [chemical
                     binding]"
                     /db_xref="CDD:99783"
     Site            order(358,362..365,367)
                     /site_type="other"
                     /note="beta-alpha-beta stucture motif"
                     /db_xref="CDD:99783"
     Site            order(363..364,392..394,478..479)
                     /site_type="other"
                     /note="NAD binding pocket [chemical binding]"
                     /db_xref="CDD:99783"
     Site            order(390..391,394)
                     /site_type="other"
                     /note="NADP ribose binding motif [chemical binding]"
                     /db_xref="CDD:99783"
     CDS             1..508
                     /gene="NOX4"
                     /coded_by="XM_054087222.1:849..2375"
                     /db_xref="GeneID:104064098"
ORIGIN      
        1 mcrvllaflr gsqkvaskkt rrlldksktf hvtcgvtici fsvlhvaahl vnalnfseny
       61 nedflalnaa nyrgedprkl lfatvpgltg vimvlvlflm ctastyairv snydifwyth
      121 nlffvfymll mlhvsggvlk yqtnleehpp gcfnpnktlq enmtvptafe elfpgyttep
      181 fpedlsvpep fvqnnfmric segpkfqshf petwfwisgp lclycmerly ryirsnkpvt
      241 itsvishpsn vlevrmmkdd fkarpgqyvi lhcprvsale shpftltmcp tdtkatfgvh
      301 lkvvgdwter frdllllhsn qdteilpifq qrrypklyvd gpfgspfees lnyevslcva
      361 ggigvtpfas ilntllddwk ryklrrlyfi wvcrdiesfr wfadllcmlh dklwqenrpd
      421 yvniqlylsq tdgmqkiige kyqalnsrll igrpqwkllf geiakcnrrk tigvfccgpn
      481 kiskilhkls nssnsygtrf eynkesfs
//
LOCUS       XP_053943209             498 aa            linear   VRT 09-MAR-2023
DEFINITION  calcium uptake protein 2, mitochondrial [Cuculus canorus].
ACCESSION   XP_053943209
VERSION     XP_053943209.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087234.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 11% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..498
                     /product="calcium uptake protein 2, mitochondrial"
                     /calculated_mol_wt=55727
     Region          149..267
                     /region_name="FRQ1"
                     /note="Ca2+-binding protein, EF-hand superfamily [Signal
                     transduction mechanisms]; COG5126"
                     /db_xref="CDD:444056"
     Region          241..459
                     /region_name="EFh_MICU2"
                     /note="EF-hand, calcium binding motif, found in calcium
                     uptake protein 2, mitochondrial (MICU2) and similar
                     proteins; cd16174"
                     /db_xref="CDD:320082"
     Region          241..270
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:320082"
     Site            order(250,252,254,261,439,441,443,450)
                     /site_type="other"
                     /note="Ca binding site [ion binding]"
                     /db_xref="CDD:320082"
     Region          297..327
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:320082"
     Region          393..422
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:320082"
     Region          430..459
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:320082"
     CDS             1..498
                     /gene="MICU2"
                     /coded_by="XM_054087234.1:1..1497"
                     /db_xref="GeneID:104055341"
ORIGIN      
        1 mekvvhagsi psprplsgia ervagfpakv itrpaegrrg ggggqvwrpr tahalrvrfe
       61 aggaaaasgk maawraalva sgraalrgrl aglrtarspr sssgwrvaaa allgggslva
      121 syggraglcp avlaqkedis naegderlsl rkhrfmhfas leyegehymt prdflfsvvf
      181 deverkasak kltkkevdaa llcvakakpg ptffrelgdk glisyaeylf lltiltkpqt
      241 gfqiafkmld tdgneqvekk effklqriig keddlkiagd etvfqgaele scdvntmllv
      301 hffgkegkek lryseffrfm enlqtevqem efikfskgln vmrkedfaew llyftdeenn
      361 eiywqnvkdr ieagenisle efktfckftn nledfsiamq mftvanrpvk raefkravkv
      421 atgqdlsdnv ldtifkifdl dgddclshse figvlrnrih rglrvpqqqg iqgywkcvkr
      481 esikgakelw kqtgkspf
//
LOCUS       XP_053943223             421 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-sensitive inward rectifier potassium channel 8 [Cuculus
            canorus].
ACCESSION   XP_053943223
VERSION     XP_053943223.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087248.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..421
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..421
                     /product="ATP-sensitive inward rectifier potassium channel
                     8"
                     /calculated_mol_wt=47450
     Region          37..181
                     /region_name="IRK"
                     /note="Inward rectifier potassium channel transmembrane
                     domain; pfam01007"
                     /db_xref="CDD:460023"
     Region          188..360
                     /region_name="IRK_C"
                     /note="Inward rectifier potassium channel C-terminal
                     domain; pfam17655"
                     /db_xref="CDD:465439"
     CDS             1..421
                     /gene="KCNJ8"
                     /coded_by="XM_054087248.1:468..1733"
                     /db_xref="GeneID:104059004"
ORIGIN      
        1 mlarksiipe eyvlariaae nlrkprirdr prkarfiakn gacnlahkni reqgrflqdi
       61 fttlvdlkwr htlviftmsf lcswllfamm wwlvafahgd mdpstenttn stkwapcvtc
      121 vrsftsaflf sievqvtigf ggrmmteecp laitvlilqn ivgliinavm lgcifmktaq
      181 ahrraetlif srqaviavrn gklcfmfrvg dlrksmiisa svriqvvrkt ttpegevipi
      241 hqvdipvdnp iesnniflva pliichvidk rsplydisas dlalqdleli vilegvvett
      301 gittqartsy iaeeilwghr fvpivteeeg vyavdyskfg ntvkvaaprc sareldekps
      361 iliqtlqkse lshqnslrkr nsmrrnnsir rsnsmrrtnp slmvpkvqfi tpegsqsase
      421 t
//
LOCUS       XP_053943233             421 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-sensitive inward rectifier potassium channel 8 [Cuculus
            canorus].
ACCESSION   XP_053943233
VERSION     XP_053943233.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087258.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..421
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..421
                     /product="ATP-sensitive inward rectifier potassium channel
                     8"
                     /calculated_mol_wt=47450
     Region          37..181
                     /region_name="IRK"
                     /note="Inward rectifier potassium channel transmembrane
                     domain; pfam01007"
                     /db_xref="CDD:460023"
     Region          188..360
                     /region_name="IRK_C"
                     /note="Inward rectifier potassium channel C-terminal
                     domain; pfam17655"
                     /db_xref="CDD:465439"
     CDS             1..421
                     /gene="KCNJ8"
                     /coded_by="XM_054087258.1:158..1423"
                     /db_xref="GeneID:104059004"
ORIGIN      
        1 mlarksiipe eyvlariaae nlrkprirdr prkarfiakn gacnlahkni reqgrflqdi
       61 fttlvdlkwr htlviftmsf lcswllfamm wwlvafahgd mdpstenttn stkwapcvtc
      121 vrsftsaflf sievqvtigf ggrmmteecp laitvlilqn ivgliinavm lgcifmktaq
      181 ahrraetlif srqaviavrn gklcfmfrvg dlrksmiisa svriqvvrkt ttpegevipi
      241 hqvdipvdnp iesnniflva pliichvidk rsplydisas dlalqdleli vilegvvett
      301 gittqartsy iaeeilwghr fvpivteeeg vyavdyskfg ntvkvaaprc sareldekps
      361 iliqtlqkse lshqnslrkr nsmrrnnsir rsnsmrrtnp slmvpkvqfi tpegsqsase
      421 t
//
LOCUS       XP_053943239             421 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-sensitive inward rectifier potassium channel 8 [Cuculus
            canorus].
ACCESSION   XP_053943239
VERSION     XP_053943239.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087264.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..421
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..421
                     /product="ATP-sensitive inward rectifier potassium channel
                     8"
                     /calculated_mol_wt=47450
     Region          37..181
                     /region_name="IRK"
                     /note="Inward rectifier potassium channel transmembrane
                     domain; pfam01007"
                     /db_xref="CDD:460023"
     Region          188..360
                     /region_name="IRK_C"
                     /note="Inward rectifier potassium channel C-terminal
                     domain; pfam17655"
                     /db_xref="CDD:465439"
     CDS             1..421
                     /gene="KCNJ8"
                     /coded_by="XM_054087264.1:557..1822"
                     /db_xref="GeneID:104059004"
ORIGIN      
        1 mlarksiipe eyvlariaae nlrkprirdr prkarfiakn gacnlahkni reqgrflqdi
       61 fttlvdlkwr htlviftmsf lcswllfamm wwlvafahgd mdpstenttn stkwapcvtc
      121 vrsftsaflf sievqvtigf ggrmmteecp laitvlilqn ivgliinavm lgcifmktaq
      181 ahrraetlif srqaviavrn gklcfmfrvg dlrksmiisa svriqvvrkt ttpegevipi
      241 hqvdipvdnp iesnniflva pliichvidk rsplydisas dlalqdleli vilegvvett
      301 gittqartsy iaeeilwghr fvpivteeeg vyavdyskfg ntvkvaaprc sareldekps
      361 iliqtlqkse lshqnslrkr nsmrrnnsir rsnsmrrtnp slmvpkvqfi tpegsqsase
      421 t
//
LOCUS       XP_053943251             897 aa            linear   VRT 09-MAR-2023
DEFINITION  A disintegrin and metalloproteinase with thrombospondin motifs 1
            [Cuculus canorus].
ACCESSION   XP_053943251
VERSION     XP_053943251.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087276.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..897
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..897
                     /product="A disintegrin and metalloproteinase with
                     thrombospondin motifs 1"
                     /calculated_mol_wt=98265
     Region          24..128
                     /region_name="Pep_M12B_propep"
                     /note="Reprolysin family propeptide; pfam01562"
                     /db_xref="CDD:460254"
     Region          174..380
                     /region_name="ZnMc_ADAMTS_like"
                     /note="Zinc-dependent metalloprotease, ADAMTS_like
                     subgroup. ADAMs (A Disintegrin And Metalloprotease) are
                     glycoproteins, which play roles in cell signaling, cell
                     fusion, and cell-cell interactions. This particular
                     subfamily represents domain architectures that...;
                     cd04273"
                     /db_xref="CDD:239801"
     Site            order(317..318,321,327)
                     /site_type="active"
                     /db_xref="CDD:239801"
     Region          394..462
                     /region_name="ADAMTS_CR_2"
                     /note="ADAMTS cysteine-rich domain 2; pfam17771"
                     /db_xref="CDD:465496"
     Region          478..530
                     /region_name="TSP1"
                     /note="Thrombospondin type 1 repeats; smart00209"
                     /db_xref="CDD:214559"
     Region          537..640
                     /region_name="ADAMTS_CR_3"
                     /note="ADAMTS cysteine-rich domain; pfam19236"
                     /db_xref="CDD:437068"
     Region          642..758
                     /region_name="ADAMTS_spacer1"
                     /note="ADAM-TS Spacer 1; pfam05986"
                     /db_xref="CDD:461796"
     Region          788..839
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          842..896
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     CDS             1..897
                     /gene="ADAMTS1"
                     /coded_by="XM_054087276.1:508..3201"
                     /db_xref="GeneID:104064800"
ORIGIN      
        1 mrsgarlall aallglclae rralvqprrl gaqrirldaf gerltlelrp dssflapglt
       61 lqhlggpppp pqrdlspcfy sgtvngdpss aaalslcagm rgafslrgrr yliqpasgtp
      121 hrygphllrl rgaprdrpaa rcavaepget agpesagrae trsrrkkrfv sspryvetml
      181 vadqsmaefh gsglkhyllt llsvaaklyk hpsirnsisl vvvkimviye erkgpdissn
      241 aaltlrnfcs wqkqhnppsd rhaehydtai lftrqdlcga ktcdtlgmad vgtvcdlnrs
      301 csiieddglq aafttahelg hvfnmphdda kqcagingis rdfhmmasml snldrsqpws
      361 pcsaymittf ldnghgecll dkphkpiqlp sdlpgtlyda nrqcqftfgd eskhcpdaas
      421 tcttlwctgt sggllvcqtk hfpwadgtsc gegkwcmngk cvnktekkhy dtpvhgswgs
      481 wgawgecsrt cgggvqysfr ecdnpiprng gkycegkrvq yrscniedcp dndgktfree
      541 qcekhnefsk spfgsgpave wtpkfagvsp kdrcklicra kgtgyffvlq pkvvdgtpcs
      601 pdstsvcvqg qcvkagcdrm igsnkkfdkc gicggngstc kkvsgtlvra kpgyhdvvti
      661 pagatnievk qrnhrgarhd gsflaikavd gtyilngdyt lstleqdity kgsvlrysgs
      721 saalerirsf splkepltiq vltvgdlpqp kikftyfvkk ptqpgsekvp srkkesfnai
      781 reiissewvi eewgecsksc gsgwqrrave crdprgrpad dcarelkpsd vrpcadvpcp
      841 qwqlgdwspc sktcgkgfkk rllkcisydg svlpqescep skkpkhlidf cnvtdcs
//
LOCUS       XP_053943265             426 aa            linear   VRT 09-MAR-2023
DEFINITION  caspase-2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053943265
VERSION     XP_053943265.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087290.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..426
                     /product="caspase-2 isoform X1"
                     /calculated_mol_wt=47987
     Region          7..93
                     /region_name="CARD_CASP2"
                     /note="Caspase activation and recruitment domain of
                     Caspase-2; cd08332"
                     /db_xref="CDD:260040"
     Region          164..419
                     /region_name="CASc"
                     /note="Caspase, interleukin-1 beta converting enzyme (ICE)
                     homologues; Cysteine-dependent aspartate-directed
                     proteases that mediate programmed cell death (apoptosis).
                     Caspases are synthesized as inactive zymogens and
                     activated by proteolysis of the peptide...; cd00032"
                     /db_xref="CDD:237997"
     Site            order(192,251,291,298,348..353,357..358)
                     /site_type="other"
                     /note="substrate pocket [chemical binding]"
                     /db_xref="CDD:237997"
     Site            order(250,293)
                     /site_type="active"
                     /db_xref="CDD:237997"
     Site            order(299,333..334,341,344,347,370,378,384,403,408..409,
                     411,414..415)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:237997"
     Site            order(300,332)
                     /site_type="active"
                     /note="proteolytic cleavage site [active]"
                     /db_xref="CDD:237997"
     CDS             1..426
                     /gene="CASP2"
                     /coded_by="XM_054087290.1:317..1597"
                     /db_xref="GeneID:104064349"
ORIGIN      
        1 mlvacgmqrc hqealkrnrv mlakqlvlke lmehliekdi itaemvetiq aksgsfsqnv
       61 eflnllpkrg pnafsafcea lretkqqhle amilkttstl sqgiarlehc cgsnlefpas
      121 escnpkrprw iepmehsldn gdgpsiplvk cctpefyhdh qhlayklise prglalilsn
      181 ihfssekdle yrsggdvdct slemlfkhlg yqvtvfhdqt aqemqnaler fsklpdhqdv
      241 dscivallsh gveggvygsd gkllqlqeaf rlfdnancpn lqnkpkmffi qacrgdetdr
      301 gvdqrdgker sdspgceesd ankeedlklr lptcsdmicg yaclkgtaam rntkrgswyi
      361 ealttvfaed srdthvadml vkvnrqikqr egyapgtefh rckemseycs tlcrdlylfp
      421 gylpgk
//
LOCUS       XP_053943275             426 aa            linear   VRT 09-MAR-2023
DEFINITION  caspase-2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053943275
VERSION     XP_053943275.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087300.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..426
                     /product="caspase-2 isoform X1"
                     /calculated_mol_wt=47987
     Region          7..93
                     /region_name="CARD_CASP2"
                     /note="Caspase activation and recruitment domain of
                     Caspase-2; cd08332"
                     /db_xref="CDD:260040"
     Region          164..419
                     /region_name="CASc"
                     /note="Caspase, interleukin-1 beta converting enzyme (ICE)
                     homologues; Cysteine-dependent aspartate-directed
                     proteases that mediate programmed cell death (apoptosis).
                     Caspases are synthesized as inactive zymogens and
                     activated by proteolysis of the peptide...; cd00032"
                     /db_xref="CDD:237997"
     Site            order(192,251,291,298,348..353,357..358)
                     /site_type="other"
                     /note="substrate pocket [chemical binding]"
                     /db_xref="CDD:237997"
     Site            order(250,293)
                     /site_type="active"
                     /db_xref="CDD:237997"
     Site            order(299,333..334,341,344,347,370,378,384,403,408..409,
                     411,414..415)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:237997"
     Site            order(300,332)
                     /site_type="active"
                     /note="proteolytic cleavage site [active]"
                     /db_xref="CDD:237997"
     CDS             1..426
                     /gene="CASP2"
                     /coded_by="XM_054087300.1:259..1539"
                     /db_xref="GeneID:104064349"
ORIGIN      
        1 mlvacgmqrc hqealkrnrv mlakqlvlke lmehliekdi itaemvetiq aksgsfsqnv
       61 eflnllpkrg pnafsafcea lretkqqhle amilkttstl sqgiarlehc cgsnlefpas
      121 escnpkrprw iepmehsldn gdgpsiplvk cctpefyhdh qhlayklise prglalilsn
      181 ihfssekdle yrsggdvdct slemlfkhlg yqvtvfhdqt aqemqnaler fsklpdhqdv
      241 dscivallsh gveggvygsd gkllqlqeaf rlfdnancpn lqnkpkmffi qacrgdetdr
      301 gvdqrdgker sdspgceesd ankeedlklr lptcsdmicg yaclkgtaam rntkrgswyi
      361 ealttvfaed srdthvadml vkvnrqikqr egyapgtefh rckemseycs tlcrdlylfp
      421 gylpgk
//
LOCUS       XP_053943285             370 aa            linear   VRT 09-MAR-2023
DEFINITION  caspase-2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053943285
VERSION     XP_053943285.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087310.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..370
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..370
                     /product="caspase-2 isoform X2"
                     /calculated_mol_wt=41838
     Region          7..>50
                     /region_name="DD"
                     /note="Death Domain Superfamily of protein-protein
                     interaction domains; cl14633"
                     /db_xref="CDD:472698"
     Region          108..363
                     /region_name="CASc"
                     /note="Caspase, interleukin-1 beta converting enzyme (ICE)
                     homologues; Cysteine-dependent aspartate-directed
                     proteases that mediate programmed cell death (apoptosis).
                     Caspases are synthesized as inactive zymogens and
                     activated by proteolysis of the peptide...; cd00032"
                     /db_xref="CDD:237997"
     Site            order(136,195,235,242,292..297,301..302)
                     /site_type="other"
                     /note="substrate pocket [chemical binding]"
                     /db_xref="CDD:237997"
     Site            order(194,237)
                     /site_type="active"
                     /db_xref="CDD:237997"
     Site            order(243,277..278,285,288,291,314,322,328,347,352..353,
                     355,358..359)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:237997"
     Site            order(244,276)
                     /site_type="active"
                     /note="proteolytic cleavage site [active]"
                     /db_xref="CDD:237997"
     CDS             1..370
                     /gene="CASP2"
                     /coded_by="XM_054087310.1:319..1431"
                     /db_xref="GeneID:104064349"
ORIGIN      
        1 mlvacgmqrc hqealkrnrv mlakqlvlke lmehliekdi itaemvetiq lehccgsnle
       61 fpasescnpk rprwiepmeh sldngdgpsi plvkcctpef yhdhqhlayk liseprglal
      121 ilsnihfsse kdleyrsggd vdctslemlf khlgyqvtvf hdqtaqemqn alerfsklpd
      181 hqdvdsciva llshgveggv ygsdgkllql qeafrlfdna ncpnlqnkpk mffiqacrgd
      241 etdrgvdqrd gkersdspgc eesdankeed lklrlptcsd micgyaclkg taamrntkrg
      301 swyiealttv faedsrdthv admlvkvnrq ikqregyapg tefhrckems eycstlcrdl
      361 ylfpgylpgk
//
LOCUS       XP_053943293             357 aa            linear   VRT 09-MAR-2023
DEFINITION  caspase-2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053943293
VERSION     XP_053943293.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087318.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..357
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..357
                     /product="caspase-2 isoform X3"
                     /calculated_mol_wt=40098
     Region          7..93
                     /region_name="CARD_CASP2"
                     /note="Caspase activation and recruitment domain of
                     Caspase-2; cd08332"
                     /db_xref="CDD:260040"
     Region          165..>296
                     /region_name="CASc"
                     /note="Caspase, interleukin-1 beta converting enzyme (ICE)
                     homologues; Cysteine-dependent aspartate-directed
                     proteases that mediate programmed cell death (apoptosis).
                     Caspases are synthesized as inactive zymogens and
                     activated by proteolysis of the peptide...; cl00042"
                     /db_xref="CDD:444667"
     Site            order(250,293)
                     /site_type="active"
                     /db_xref="CDD:237997"
     CDS             1..357
                     /gene="CASP2"
                     /coded_by="XM_054087318.1:322..1395"
                     /db_xref="GeneID:104064349"
ORIGIN      
        1 mlvacgmqrc hqealkrnrv mlakqlvlke lmehliekdi itaemvetiq aksgsfsqnv
       61 eflnllpkrg pnafsafcea lretkqqhle amilkttstl sqgiarlehc cgsnlefpas
      121 escnpkrprw iepmehsldn gdgpsiplvk cctpefyhdh qhlayklise prglalilsn
      181 ihfssekdle yrsggdvdct slemlfkhlg yqvtvfhdqt aqemqnaler fsklpdhqdv
      241 dscivallsh gveggvygsd gkllqlqeaf rlfdnancpn lqnkpkmffi qacrggvsgi
      301 hihlplpccc hciccfmrqt gewikemgkn gqipqavrrv mqtrkkissc vclrali
//
LOCUS       XP_009556174             354 aa            linear   VRT 09-MAR-2023
DEFINITION  inactive ADP-ribosyltransferase ARH2 [Cuculus canorus].
ACCESSION   XP_009556174
VERSION     XP_009556174.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557879.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..354
                     /product="inactive ADP-ribosyltransferase ARH2"
                     /calculated_mol_wt=40369
     Region          6..328
                     /region_name="ADP_ribosyl_GH"
                     /note="ADP-ribosylglycohydrolase; pfam03747"
                     /db_xref="CDD:461037"
     CDS             1..354
                     /gene="ADPRHL1"
                     /coded_by="XM_009557879.2:322..1386"
                     /db_xref="GeneID:104056618"
ORIGIN      
        1 mdkfkaalvl aavgdalgyr nfsrennalg akiqqelkei gglenlvlsp dkwpvsdntl
       61 mhmataeavi tdywcledly relvkryvda idklsgrrpd patiegckel kpdnyllawh
      121 tpfnekgsgf gastkamclg mrywkperle slievsiecg rmthnhptgf lgslctalfv
      181 ayaiqgkplv qwgrdmmkvv pmaeeyckkt irhmaeyqeh wfyfeakwqf yleereinee
      241 nqnkpvfpdn ydaeerekty rrwssegrgg rrghdapmia ydallgcggd wtelcnrsmf
      301 hggesaatgs iagclyglvy glskvpkgly qdleqrerle ylgenlyrls meek
//
LOCUS       XP_053943331             341 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM76B isoform X1 [Cuculus canorus].
ACCESSION   XP_053943331
VERSION     XP_053943331.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087356.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..341
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..341
                     /product="protein FAM76B isoform X1"
                     /calculated_mol_wt=38534
     Region          12..330
                     /region_name="FAM76"
                     /note="FAM76 protein; pfam16046"
                     /db_xref="CDD:464993"
     CDS             1..341
                     /gene="FAM76B"
                     /coded_by="XM_054087356.1:265..1290"
                     /db_xref="GeneID:104064181"
ORIGIN      
        1 maaaaapaly actkcnqryp feelsqgqql ckecriahpi vkctycrsef qqesktntic
       61 kkcaqnvkqf gtpkpcqycn iiaafigtkc qrctnsekky gppqtceqck qqcafdrkee
      121 grrkvdgkll cwlctlsykr vlqktkeqrk slgsshsnss ssslaekdqh hskhhhhhhh
      181 hhrhssshhk isslspeqdq glwkqshkss aaiqnetpkk kpkleskpsn gdsssinqsa
      241 dsggtdnfvl isqlkeevms lkrllqqrdq tilekdkklt elkadfqyqe snlrtkmngm
      301 ekahketveq lqaknrellk qvaalskgkk fdksgsilts p
//
LOCUS       XP_053943339             340 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM76B isoform X2 [Cuculus canorus].
ACCESSION   XP_053943339
VERSION     XP_053943339.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087364.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..340
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..340
                     /product="protein FAM76B isoform X2"
                     /calculated_mol_wt=38447
     Region          12..329
                     /region_name="FAM76"
                     /note="FAM76 protein; pfam16046"
                     /db_xref="CDD:464993"
     CDS             1..340
                     /gene="FAM76B"
                     /coded_by="XM_054087364.1:267..1289"
                     /db_xref="GeneID:104064181"
ORIGIN      
        1 maaaaapaly actkcnqryp feelsqgqql ckecriahpi vkctycrsef qqesktntic
       61 kkcaqnvkqf gtpkpcqycn iiaafigtkc qrctnsekky gppqtceqck qqcafdrkee
      121 grrkvdgkll cwlctlsykr vlqktkeqrk slgsshsnss ssslaekdqh hskhhhhhhh
      181 hhrhssshhk isslspeqdq glwkqshkss aaiqnetpkk kpkleskpsn gdssinqsad
      241 sggtdnfvli sqlkeevmsl krllqqrdqt ilekdkklte lkadfqyqes nlrtkmngme
      301 kahketveql qaknrellkq vaalskgkkf dksgsiltsp
//
LOCUS       XP_053943347             325 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM76B isoform X3 [Cuculus canorus].
ACCESSION   XP_053943347
VERSION     XP_053943347.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087372.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..325
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..325
                     /product="protein FAM76B isoform X3"
                     /calculated_mol_wt=36735
     Region          12..314
                     /region_name="FAM76"
                     /note="FAM76 protein; pfam16046"
                     /db_xref="CDD:464993"
     CDS             1..325
                     /gene="FAM76B"
                     /coded_by="XM_054087372.1:269..1246"
                     /db_xref="GeneID:104064181"
ORIGIN      
        1 maaaaapaly actkcnqryp feelsqgqql ckecriahpi vkctycrsef qqesktntic
       61 kkcaqnvkqf gtpkpcqycn iiaafigtkc qrctnsekky gppqtceqck qqcafdrkee
      121 grrkvdgkll cwlctlsykr vlqktkeqrk slgsshsnss ssslaekdqh hskhhhhhhh
      181 hhrhssshhn hkssaaiqne tpkkkpkles kpsngdsssi nqsadsggtd nfvlisqlke
      241 evmslkrllq qrdqtilekd kkltelkadf qyqesnlrtk mngmekahke tveqlqaknr
      301 ellkqvaals kgkkfdksgs iltsp
//
LOCUS       XP_053943356             324 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM76B isoform X4 [Cuculus canorus].
ACCESSION   XP_053943356
VERSION     XP_053943356.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087381.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..324
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..324
                     /product="protein FAM76B isoform X4"
                     /calculated_mol_wt=36648
     Region          12..313
                     /region_name="FAM76"
                     /note="FAM76 protein; pfam16046"
                     /db_xref="CDD:464993"
     CDS             1..324
                     /gene="FAM76B"
                     /coded_by="XM_054087381.1:270..1244"
                     /db_xref="GeneID:104064181"
ORIGIN      
        1 maaaaapaly actkcnqryp feelsqgqql ckecriahpi vkctycrsef qqesktntic
       61 kkcaqnvkqf gtpkpcqycn iiaafigtkc qrctnsekky gppqtceqck qqcafdrkee
      121 grrkvdgkll cwlctlsykr vlqktkeqrk slgsshsnss ssslaekdqh hskhhhhhhh
      181 hhrhssshhn hkssaaiqne tpkkkpkles kpsngdssin qsadsggtdn fvlisqlkee
      241 vmslkrllqq rdqtilekdk kltelkadfq yqesnlrtkm ngmekahket veqlqaknre
      301 llkqvaalsk gkkfdksgsi ltsp
//
LOCUS       XP_053943367             314 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM76B isoform X5 [Cuculus canorus].
ACCESSION   XP_053943367
VERSION     XP_053943367.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087392.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..314
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..314
                     /product="protein FAM76B isoform X5"
                     /calculated_mol_wt=35645
     Region          12..303
                     /region_name="FAM76"
                     /note="FAM76 protein; pfam16046"
                     /db_xref="CDD:464993"
     CDS             1..314
                     /gene="FAM76B"
                     /coded_by="XM_054087392.1:256..1200"
                     /db_xref="GeneID:104064181"
ORIGIN      
        1 maaaaapaly actkcnqryp feelsqgqql ckecriahpi vkctycrsef qqesktntic
       61 kkcaqnvkqf gtpkpcqycn iiaafigtkc qrctnsekky gppqtceqck qqcafdrkee
      121 grrkvdgkll cwlctlsykr vlqktkeqrk slgsshsnss ssslaekdqh hskhhhhhhh
      181 hhrhssshhk isslspeqdq glwkqsssin qsadsggtdn fvlisqlkee vmslkrllqq
      241 rdqtilekdk kltelkadfq yqesnlrtkm ngmekahket veqlqaknre llkqvaalsk
      301 gkkfdksgsi ltsp
//
LOCUS       XP_053943376             313 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM76B isoform X6 [Cuculus canorus].
ACCESSION   XP_053943376
VERSION     XP_053943376.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087401.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..313
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..313
                     /product="protein FAM76B isoform X6"
                     /calculated_mol_wt=35558
     Region          12..302
                     /region_name="FAM76"
                     /note="FAM76 protein; pfam16046"
                     /db_xref="CDD:464993"
     CDS             1..313
                     /gene="FAM76B"
                     /coded_by="XM_054087401.1:265..1206"
                     /db_xref="GeneID:104064181"
ORIGIN      
        1 maaaaapaly actkcnqryp feelsqgqql ckecriahpi vkctycrsef qqesktntic
       61 kkcaqnvkqf gtpkpcqycn iiaafigtkc qrctnsekky gppqtceqck qqcafdrkee
      121 grrkvdgkll cwlctlsykr vlqktkeqrk slgsshsnss ssslaekdqh hskhhhhhhh
      181 hhrhssshhk isslspeqdq glwkqssinq sadsggtdnf vlisqlkeev mslkrllqqr
      241 dqtilekdkk ltelkadfqy qesnlrtkmn gmekahketv eqlqaknrel lkqvaalskg
      301 kkfdksgsil tsp
//
LOCUS       XP_053943393            1927 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase TTC3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053943393
VERSION     XP_053943393.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087418.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1927
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1927
                     /product="E3 ubiquitin-protein ligase TTC3 isoform X1"
                     /calculated_mol_wt=219463
     Region          246..274
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(247,250..251,254..255,257,281,284..285,288..289,
                     291..292,315,318..319,322..323,326)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          <257..>382
                     /region_name="TPR"
                     /note="Tetratricopeptide (TPR) repeat [General function
                     prediction only]; COG0457"
                     /db_xref="CDD:440225"
     Region          279..309
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          314..342
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          562..>606
                     /region_name="CpoB"
                     /note="Cell division protein CpoB, coordinates
                     peptidoglycan biosynthesis and outer membrane constriction
                     [Cell cycle control, cell division, chromosome
                     partitioning]; COG1729"
                     /db_xref="CDD:441335"
     Region          629..744
                     /region_name="TTC3_DZIP3_dom"
                     /note="E3 ubiquitin-protein ligase TTC3/DZIP3 domain;
                     pfam19179"
                     /db_xref="CDD:465988"
     Region          <1438..>1578
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..1927
                     /gene="TTC3"
                     /coded_by="XM_054087418.1:447..6230"
                     /db_xref="GeneID:104059256"
ORIGIN      
        1 mklllsvffc cddlkscest ryllfaspsc isynrflsgs ctmgepvses glggvafydg
       61 iksccklghr lfkqrslhkp ktdvdpcqvw cslpvdvlte ycdvfkisif wsllfsnesn
      121 slaaglnsse ilewnwkrvc dlevledlvg likkvanvpr figgilkigs giengvfdvk
      181 daldwvrytg gfsflqkldd lagfglvcle vffavcncgi tkvaledcnl veefkvltce
      241 kcrknsefmk qkgneefsqr nfddaimsyt kaiefcpmnh llygnralcl iltkqykkal
      301 adgkraiilk pnwpkghyhf ckalsllgeh klaleankra qelcknifdg lkdlvqqnek
      361 lkktieeisg iqehepnqkk llgkkdcsss eshlisqeqd eleedkkgtq sdpkdhrrqk
      421 hdtrvtdiqg tegkgsslef ppsqshqnkg rpkpksgyse kardhfdski eskaiqdklf
      481 ytvqkvdlam lskefkslvh dgytalmdqr chsaeqafsq llsilspsel kqlnlhviny
      541 viivyghata llgigqpeal tkaedqfkki ieqyqeerfg clahygigkv ylrqnrfsda
      601 ldqfvksqtm vnhkivpgvl twpttcqvie etrtenlqli lknyieeckf ppepdaicry
      661 qqchghskiq ifftdpdfkg firitccqqc rvefhiscwk klktmnysdk ndkdflqelc
      721 ftpdcrglis kivifsssgl vkcefeqkit ktkgpprasi kqkcsslrkl kmkqekkirr
      781 kcareearnf akkkieekqm gnepshyndh sdyvldlsag drvlqhisrn aeqiktavcd
      841 askllkmlls wfviseedyi sysrtnsmsh evmeqlisyl iqeknrvktr sfiyvlsele
      901 evdpklrkwl khlnnlglaa tknfllkygq flkelnlsil talwnekygs kfdyvttsse
      961 dkeihdyflk ppiektrcfi wllednrenf pslhqaldef fdkmddptii lkkrenenis
     1021 tngikvknkn rkknskdsrs ilvlssgvst apreeeeili eentldftns depfvipeyl
     1081 reqleefeal cdisnsnsyq rlldnnnldq tceslyeyfs qileehgpme innkllvgey
     1141 ehfpeetrkv vedkgglkcf llksprfimv dnliglrkhe vlieestnrn etgdneeeng
     1201 iacnvqehss qnklqlnpaa kefkplsypn qpriststdl tvasyetslc lpwsfpasce
     1261 lvpslcsqni dtiqnqssfs eilpegiflp qtswsyqyer ilpvpsqmpl msnvvrqpsy
     1321 iyadrvayqd ndkstisnrk yvlskfipte iqtredfqcq vensvntfye dsfavenstd
     1381 eaecgiqvik tekegrgmpl vktnphtrmi avqvthevad retntlpfhp femqhgdilr
     1441 vekehqvlqe qlkeaqekye qlqsrsseei galkellkks aeeievskse ldwlhqdlei
     1501 kvkkwqqekk enqenlkalr ntakkhtdtn drysktidek ekqynvylnt fletsnklat
     1561 ekvkleeliq ksqdesqeyv nravkaeisv lknwketeac klngiaanae anlkmlksls
     1621 sssasaaakl ksqidsweif isnvkkqlek veaeyegkiq avkngvrscl tkmetveips
     1681 ppsvfakqgr apisdpaiim cssasaspas lpafsssedq gpmhasfnkq aqakptyass
     1741 kscsasgglv kmhskpleas ysdkvlancp sgisgsntqn vqpnqnlqgn aavrsrpsgl
     1801 psnkklpkaf eiiishlqsi fpnysssdft afirdiqrrn gntlsdlsld eilsrvtqli
     1861 ldqqnkvlwc vqllpfllcv sdrgnsaahs rkecklafav klqntnllki lfqhlcrhqq
     1921 qgdppsq
//
LOCUS       XP_053943402            1926 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase TTC3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053943402
VERSION     XP_053943402.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087427.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1926
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1926
                     /product="E3 ubiquitin-protein ligase TTC3 isoform X2"
                     /calculated_mol_wt=219376
     Region          245..273
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(246,249..250,253..254,256,280,283..284,287..288,
                     290..291,314,317..318,321..322,325)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          <256..>381
                     /region_name="TPR"
                     /note="Tetratricopeptide (TPR) repeat [General function
                     prediction only]; COG0457"
                     /db_xref="CDD:440225"
     Region          278..308
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          313..341
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          561..>605
                     /region_name="CpoB"
                     /note="Cell division protein CpoB, coordinates
                     peptidoglycan biosynthesis and outer membrane constriction
                     [Cell cycle control, cell division, chromosome
                     partitioning]; COG1729"
                     /db_xref="CDD:441335"
     Region          628..743
                     /region_name="TTC3_DZIP3_dom"
                     /note="E3 ubiquitin-protein ligase TTC3/DZIP3 domain;
                     pfam19179"
                     /db_xref="CDD:465988"
     Region          <1437..>1577
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..1926
                     /gene="TTC3"
                     /coded_by="XM_054087427.1:447..6227"
                     /db_xref="GeneID:104059256"
ORIGIN      
        1 mklllsvffc cddlkscest ryllfaspsc isynrflsgs ctmgepvses glggvafydg
       61 iksccklghr lfkqrslhkp ktdvdpcqvw cslpvdvlte ycdvfkisif wsllfsnesn
      121 slaaglnsei lewnwkrvcd levledlvgl ikkvanvprf iggilkigsg iengvfdvkd
      181 aldwvrytgg fsflqklddl agfglvclev ffavcncgit kvaledcnlv eefkvltcek
      241 crknsefmkq kgneefsqrn fddaimsytk aiefcpmnhl lygnralcli ltkqykkala
      301 dgkraiilkp nwpkghyhfc kalsllgehk laleankraq elcknifdgl kdlvqqnekl
      361 kktieeisgi qehepnqkkl lgkkdcssse shlisqeqde leedkkgtqs dpkdhrrqkh
      421 dtrvtdiqgt egkgsslefp psqshqnkgr pkpksgysek ardhfdskie skaiqdklfy
      481 tvqkvdlaml skefkslvhd gytalmdqrc hsaeqafsql lsilspselk qlnlhvinyv
      541 iivyghatal lgigqpealt kaedqfkkii eqyqeerfgc lahygigkvy lrqnrfsdal
      601 dqfvksqtmv nhkivpgvlt wpttcqviee trtenlqlil knyieeckfp pepdaicryq
      661 qchghskiqi fftdpdfkgf iritccqqcr vefhiscwkk lktmnysdkn dkdflqelcf
      721 tpdcrglisk ivifsssglv kcefeqkitk tkgpprasik qkcsslrklk mkqekkirrk
      781 careearnfa kkkieekqmg nepshyndhs dyvldlsagd rvlqhisrna eqiktavcda
      841 skllkmllsw fviseedyis ysrtnsmshe vmeqlisyli qeknrvktrs fiyvlselee
      901 vdpklrkwlk hlnnlglaat knfllkygqf lkelnlsilt alwnekygsk fdyvttssed
      961 keihdyflkp piektrcfiw llednrenfp slhqaldeff dkmddptiil kkrenenist
     1021 ngikvknknr kknskdsrsi lvlssgvsta preeeeilie entldftnsd epfvipeylr
     1081 eqleefealc disnsnsyqr lldnnnldqt ceslyeyfsq ileehgpmei nnkllvgeye
     1141 hfpeetrkvv edkgglkcfl lksprfimvd nliglrkhev lieestnrne tgdneeengi
     1201 acnvqehssq nklqlnpaak efkplsypnq priststdlt vasyetslcl pwsfpascel
     1261 vpslcsqnid tiqnqssfse ilpegiflpq tswsyqyeri lpvpsqmplm snvvrqpsyi
     1321 yadrvayqdn dkstisnrky vlskfiptei qtredfqcqv ensvntfyed sfavenstde
     1381 aecgiqvikt ekegrgmplv ktnphtrmia vqvthevadr etntlpfhpf emqhgdilrv
     1441 ekehqvlqeq lkeaqekyeq lqsrsseeig alkellkksa eeievsksel dwlhqdleik
     1501 vkkwqqekke nqenlkalrn takkhtdtnd rysktideke kqynvylntf letsnklate
     1561 kvkleeliqk sqdesqeyvn ravkaeisvl knwketeack lngiaanaea nlkmlkslss
     1621 ssasaaaklk sqidsweifi snvkkqlekv eaeyegkiqa vkngvrsclt kmetveipsp
     1681 psvfakqgra pisdpaiimc ssasaspasl pafsssedqg pmhasfnkqa qakptyassk
     1741 scsasgglvk mhskpleasy sdkvlancps gisgsntqnv qpnqnlqgna avrsrpsglp
     1801 snkklpkafe iiishlqsif pnysssdfta firdiqrrng ntlsdlslde ilsrvtqlil
     1861 dqqnkvlwcv qllpfllcvs drgnsaahsr kecklafavk lqntnllkil fqhlcrhqqq
     1921 gdppsq
//
LOCUS       XP_053943413            1926 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase TTC3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053943413
VERSION     XP_053943413.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087438.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1926
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1926
                     /product="E3 ubiquitin-protein ligase TTC3 isoform X3"
                     /calculated_mol_wt=219376
     Region          246..274
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(247,250..251,254..255,257,281,284..285,288..289,
                     291..292,315,318..319,322..323,326)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          <257..>382
                     /region_name="TPR"
                     /note="Tetratricopeptide (TPR) repeat [General function
                     prediction only]; COG0457"
                     /db_xref="CDD:440225"
     Region          279..309
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          314..342
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          562..>606
                     /region_name="CpoB"
                     /note="Cell division protein CpoB, coordinates
                     peptidoglycan biosynthesis and outer membrane constriction
                     [Cell cycle control, cell division, chromosome
                     partitioning]; COG1729"
                     /db_xref="CDD:441335"
     Region          629..744
                     /region_name="TTC3_DZIP3_dom"
                     /note="E3 ubiquitin-protein ligase TTC3/DZIP3 domain;
                     pfam19179"
                     /db_xref="CDD:465988"
     Region          <1438..>1662
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..1926
                     /gene="TTC3"
                     /coded_by="XM_054087438.1:448..6228"
                     /db_xref="GeneID:104059256"
ORIGIN      
        1 mklllsvffc cddlkscest ryllfaspsc isynrflsgs ctmgepvses glggvafydg
       61 iksccklghr lfkqrslhkp ktdvdpcqvw cslpvdvlte ycdvfkisif wsllfsnesn
      121 slaaglnsse ilewnwkrvc dlevledlvg likkvanvpr figgilkigs giengvfdvk
      181 daldwvrytg gfsflqkldd lagfglvcle vffavcncgi tkvaledcnl veefkvltce
      241 kcrknsefmk qkgneefsqr nfddaimsyt kaiefcpmnh llygnralcl iltkqykkal
      301 adgkraiilk pnwpkghyhf ckalsllgeh klaleankra qelcknifdg lkdlvqqnek
      361 lkktieeisg iqehepnqkk llgkkdcsss eshlisqeqd eleedkkgtq sdpkdhrrqk
      421 hdtrvtdiqg tegkgsslef ppsqshqnkg rpkpksgyse kardhfdski eskaiqdklf
      481 ytvqkvdlam lskefkslvh dgytalmdqr chsaeqafsq llsilspsel kqlnlhviny
      541 viivyghata llgigqpeal tkaedqfkki ieqyqeerfg clahygigkv ylrqnrfsda
      601 ldqfvksqtm vnhkivpgvl twpttcqvie etrtenlqli lknyieeckf ppepdaicry
      661 qqchghskiq ifftdpdfkg firitccqqc rvefhiscwk klktmnysdk ndkdflqelc
      721 ftpdcrglis kivifsssgl vkcefeqkit ktkgpprasi kqkcsslrkl kmkqekkirr
      781 kcareearnf akkkieekqm gnepshyndh sdyvldlsag drvlqhisrn aeqiktavcd
      841 askllkmlls wfviseedyi sysrtnsmsh evmeqlisyl iqeknrvktr sfiyvlsele
      901 evdpklrkwl khlnnlglaa tknfllkygq flkelnlsil talwnekygs kfdyvttsse
      961 dkeihdyflk ppiektrcfi wllednrenf pslhqaldef fdkmddptii lkkrenenis
     1021 tngikvknkn rkknskdsrs ilvlssgvst apreeeeili eentldftns depfvipeyl
     1081 reqleefeal cdisnsnsyq rlldnnnldq tceslyeyfs qileehgpme innkllvgey
     1141 ehfpeetrkv vedkgglkcf llksprfimv dnliglrkhe vlieestnrn etgdneeeng
     1201 iacnvqehss qnklqlnpaa kefkplsypn qpriststdl tvasyetslc lpwsfpasce
     1261 lvpslcsqni dtiqnqssfs eilpegiflp qtswsyqyer ilpvpsqmpl msnvvrqpsy
     1321 iyadrvayqd ndkstisnrk yvlskfipte iqtredfqcq vensvntfye dsfavenstd
     1381 eaecgiqvik tekegrgmpl vktnphtrmi avqvthevad retntlpfhp femqhgdilr
     1441 vekehqvlqe qlkeaqekye qlqsrsseei galkellkks aeeievskse ldwlhqdlei
     1501 kvkkwqqekk enqenlkalr ntakkhtdtn drysktidek ekqynvylnt fletsnklat
     1561 ekvkleeliq ksqdesqeyv nravkaeisv lknwketeac klngiaanae anlkmlksls
     1621 ssasaaaklk sqidsweifi snvkkqlekv eaeyegkiqa vkngvrsclt kmetveipsp
     1681 psvfakqgra pisdpaiimc ssasaspasl pafsssedqg pmhasfnkqa qakptyassk
     1741 scsasgglvk mhskpleasy sdkvlancps gisgsntqnv qpnqnlqgna avrsrpsglp
     1801 snkklpkafe iiishlqsif pnysssdfta firdiqrrng ntlsdlslde ilsrvtqlil
     1861 dqqnkvlwcv qllpfllcvs drgnsaahsr kecklafavk lqntnllkil fqhlcrhqqq
     1921 gdppsq
//
LOCUS       XP_053943425            1909 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase TTC3 isoform X4 [Cuculus canorus].
ACCESSION   XP_053943425
VERSION     XP_053943425.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087450.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1909
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1909
                     /product="E3 ubiquitin-protein ligase TTC3 isoform X4"
                     /calculated_mol_wt=217273
     Region          228..256
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(229,232..233,236..237,239,263,266..267,270..271,
                     273..274,297,300..301,304..305,308)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          <239..>364
                     /region_name="TPR"
                     /note="Tetratricopeptide (TPR) repeat [General function
                     prediction only]; COG0457"
                     /db_xref="CDD:440225"
     Region          261..291
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          296..324
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          544..>588
                     /region_name="CpoB"
                     /note="Cell division protein CpoB, coordinates
                     peptidoglycan biosynthesis and outer membrane constriction
                     [Cell cycle control, cell division, chromosome
                     partitioning]; COG1729"
                     /db_xref="CDD:441335"
     Region          611..726
                     /region_name="TTC3_DZIP3_dom"
                     /note="E3 ubiquitin-protein ligase TTC3/DZIP3 domain;
                     pfam19179"
                     /db_xref="CDD:465988"
     Region          <1420..>1560
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..1909
                     /gene="TTC3"
                     /coded_by="XM_054087450.1:16..5745"
                     /db_xref="GeneID:104059256"
ORIGIN      
        1 mrshsqgvts rgsgpirwgr gsctmgepvs esglggvafy dgiksccklg hrlfkqrslh
       61 kpktdvdpcq vwcslpvdvl teycdvfkis ifwsllfsne snslaaglns seilewnwkr
      121 vcdlevledl vglikkvanv prfiggilki gsgiengvfd vkdaldwvry tggfsflqkl
      181 ddlagfglvc levffavcnc gitkvaledc nlveefkvlt cekcrknsef mkqkgneefs
      241 qrnfddaims ytkaiefcpm nhllygnral cliltkqykk aladgkraii lkpnwpkghy
      301 hfckalsllg ehklaleank raqelcknif dglkdlvqqn eklkktieei sgiqehepnq
      361 kkllgkkdcs sseshlisqe qdeleedkkg tqsdpkdhrr qkhdtrvtdi qgtegkgssl
      421 efppsqshqn kgrpkpksgy sekardhfds kieskaiqdk lfytvqkvdl amlskefksl
      481 vhdgytalmd qrchsaeqaf sqllsilsps elkqlnlhvi nyviivygha tallgigqpe
      541 altkaedqfk kiieqyqeer fgclahygig kvylrqnrfs daldqfvksq tmvnhkivpg
      601 vltwpttcqv ieetrtenlq lilknyieec kfppepdaic ryqqchghsk iqifftdpdf
      661 kgfiritccq qcrvefhisc wkklktmnys dkndkdflqe lcftpdcrgl iskivifsss
      721 glvkcefeqk itktkgppra sikqkcsslr klkmkqekki rrkcareear nfakkkieek
      781 qmgnepshyn dhsdyvldls agdrvlqhis rnaeqiktav cdaskllkml lswfviseed
      841 yisysrtnsm shevmeqlis yliqeknrvk trsfiyvlse leevdpklrk wlkhlnnlgl
      901 aatknfllky gqflkelnls iltalwneky gskfdyvtts sedkeihdyf lkppiektrc
      961 fiwllednre nfpslhqald effdkmddpt iilkkrenen istngikvkn knrkknskds
     1021 rsilvlssgv stapreeeei lieentldft nsdepfvipe ylreqleefe alcdisnsns
     1081 yqrlldnnnl dqtceslyey fsqileehgp meinnkllvg eyehfpeetr kvvedkgglk
     1141 cfllksprfi mvdnliglrk hevlieestn rnetgdneee ngiacnvqeh ssqnklqlnp
     1201 aakefkplsy pnqpristst dltvasyets lclpwsfpas celvpslcsq nidtiqnqss
     1261 fseilpegif lpqtswsyqy erilpvpsqm plmsnvvrqp syiyadrvay qdndkstisn
     1321 rkyvlskfip teiqtredfq cqvensvntf yedsfavens tdeaecgiqv iktekegrgm
     1381 plvktnphtr miavqvthev adretntlpf hpfemqhgdi lrvekehqvl qeqlkeaqek
     1441 yeqlqsrsse eigalkellk ksaeeievsk seldwlhqdl eikvkkwqqe kkenqenlka
     1501 lrntakkhtd tndrysktid ekekqynvyl ntfletsnkl atekvkleel iqksqdesqe
     1561 yvnravkaei svlknwkete acklngiaan aeanlkmlks lssssasaaa klksqidswe
     1621 ifisnvkkql ekveaeyegk iqavkngvrs cltkmetvei psppsvfakq grapisdpai
     1681 imcssasasp aslpafssse dqgpmhasfn kqaqakptya sskscsasgg lvkmhskple
     1741 asysdkvlan cpsgisgsnt qnvqpnqnlq gnaavrsrps glpsnkklpk afeiiishlq
     1801 sifpnysssd ftafirdiqr rngntlsdls ldeilsrvtq lildqqnkvl wcvqllpfll
     1861 cvsdrgnsaa hsrkecklaf avklqntnll kilfqhlcrh qqqgdppsq
//
LOCUS       XP_053943434            1906 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase TTC3 isoform X5 [Cuculus canorus].
ACCESSION   XP_053943434
VERSION     XP_053943434.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087459.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1906
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1906
                     /product="E3 ubiquitin-protein ligase TTC3 isoform X5"
                     /calculated_mol_wt=217074
     Region          246..274
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          <257..>361
                     /region_name="TPR"
                     /note="Tetratricopeptide (TPR) repeat [General function
                     prediction only]; COG0457"
                     /db_xref="CDD:440225"
     Region          293..321
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          541..>585
                     /region_name="CpoB"
                     /note="Cell division protein CpoB, coordinates
                     peptidoglycan biosynthesis and outer membrane constriction
                     [Cell cycle control, cell division, chromosome
                     partitioning]; COG1729"
                     /db_xref="CDD:441335"
     Region          608..723
                     /region_name="TTC3_DZIP3_dom"
                     /note="E3 ubiquitin-protein ligase TTC3/DZIP3 domain;
                     pfam19179"
                     /db_xref="CDD:465988"
     Region          <1417..>1557
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..1906
                     /gene="TTC3"
                     /coded_by="XM_054087459.1:448..6168"
                     /db_xref="GeneID:104059256"
ORIGIN      
        1 mklllsvffc cddlkscest ryllfaspsc isynrflsgs ctmgepvses glggvafydg
       61 iksccklghr lfkqrslhkp ktdvdpcqvw cslpvdvlte ycdvfkisif wsllfsnesn
      121 slaaglnsse ilewnwkrvc dlevledlvg likkvanvpr figgilkigs giengvfdvk
      181 daldwvrytg gfsflqkldd lagfglvcle vffavcncgi tkvaledcnl veefkvltce
      241 kcrknsefmk qkgneefsqr nfddaimsyt kaiefwkala dgkraiilkp nwpkghyhfc
      301 kalsllgehk laleankraq elcknifdgl kdlvqqnekl kktieeisgi qehepnqkkl
      361 lgkkdcssse shlisqeqde leedkkgtqs dpkdhrrqkh dtrvtdiqgt egkgsslefp
      421 psqshqnkgr pkpksgysek ardhfdskie skaiqdklfy tvqkvdlaml skefkslvhd
      481 gytalmdqrc hsaeqafsql lsilspselk qlnlhvinyv iivyghatal lgigqpealt
      541 kaedqfkkii eqyqeerfgc lahygigkvy lrqnrfsdal dqfvksqtmv nhkivpgvlt
      601 wpttcqviee trtenlqlil knyieeckfp pepdaicryq qchghskiqi fftdpdfkgf
      661 iritccqqcr vefhiscwkk lktmnysdkn dkdflqelcf tpdcrglisk ivifsssglv
      721 kcefeqkitk tkgpprasik qkcsslrklk mkqekkirrk careearnfa kkkieekqmg
      781 nepshyndhs dyvldlsagd rvlqhisrna eqiktavcda skllkmllsw fviseedyis
      841 ysrtnsmshe vmeqlisyli qeknrvktrs fiyvlselee vdpklrkwlk hlnnlglaat
      901 knfllkygqf lkelnlsilt alwnekygsk fdyvttssed keihdyflkp piektrcfiw
      961 llednrenfp slhqaldeff dkmddptiil kkrenenist ngikvknknr kknskdsrsi
     1021 lvlssgvsta preeeeilie entldftnsd epfvipeylr eqleefealc disnsnsyqr
     1081 lldnnnldqt ceslyeyfsq ileehgpmei nnkllvgeye hfpeetrkvv edkgglkcfl
     1141 lksprfimvd nliglrkhev lieestnrne tgdneeengi acnvqehssq nklqlnpaak
     1201 efkplsypnq priststdlt vasyetslcl pwsfpascel vpslcsqnid tiqnqssfse
     1261 ilpegiflpq tswsyqyeri lpvpsqmplm snvvrqpsyi yadrvayqdn dkstisnrky
     1321 vlskfiptei qtredfqcqv ensvntfyed sfavenstde aecgiqvikt ekegrgmplv
     1381 ktnphtrmia vqvthevadr etntlpfhpf emqhgdilrv ekehqvlqeq lkeaqekyeq
     1441 lqsrsseeig alkellkksa eeievsksel dwlhqdleik vkkwqqekke nqenlkalrn
     1501 takkhtdtnd rysktideke kqynvylntf letsnklate kvkleeliqk sqdesqeyvn
     1561 ravkaeisvl knwketeack lngiaanaea nlkmlkslss ssasaaaklk sqidsweifi
     1621 snvkkqlekv eaeyegkiqa vkngvrsclt kmetveipsp psvfakqgra pisdpaiimc
     1681 ssasaspasl pafsssedqg pmhasfnkqa qakptyassk scsasgglvk mhskpleasy
     1741 sdkvlancps gisgsntqnv qpnqnlqgna avrsrpsglp snkklpkafe iiishlqsif
     1801 pnysssdfta firdiqrrng ntlsdlslde ilsrvtqlil dqqnkvlwcv qllpfllcvs
     1861 drgnsaahsr kecklafavk lqntnllkil fqhlcrhqqq gdppsq
//
LOCUS       XP_053943441            1885 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase TTC3 isoform X6 [Cuculus canorus].
ACCESSION   XP_053943441
VERSION     XP_053943441.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087466.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1885
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1885
                     /product="E3 ubiquitin-protein ligase TTC3 isoform X6"
                     /calculated_mol_wt=214730
     Region          204..232
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(205,208..209,212..213,215,239,242..243,246..247,
                     249..250,273,276..277,280..281,284)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          <215..>340
                     /region_name="TPR"
                     /note="Tetratricopeptide (TPR) repeat [General function
                     prediction only]; COG0457"
                     /db_xref="CDD:440225"
     Region          237..267
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          272..300
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          520..>564
                     /region_name="CpoB"
                     /note="Cell division protein CpoB, coordinates
                     peptidoglycan biosynthesis and outer membrane constriction
                     [Cell cycle control, cell division, chromosome
                     partitioning]; COG1729"
                     /db_xref="CDD:441335"
     Region          587..702
                     /region_name="TTC3_DZIP3_dom"
                     /note="E3 ubiquitin-protein ligase TTC3/DZIP3 domain;
                     pfam19179"
                     /db_xref="CDD:465988"
     Region          <1396..>1536
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..1885
                     /gene="TTC3"
                     /coded_by="XM_054087466.1:78..5735"
                     /db_xref="GeneID:104059256"
ORIGIN      
        1 mgepvsesgl ggvafydgik sccklghrlf kqrslhkpkt dvdpcqvwcs lpvdvlteyc
       61 dvfkisifws llfsnesnsl aaglnsseil ewnwkrvcdl evledlvgli kkvanvprfi
      121 ggilkigsgi engvfdvkda ldwvrytggf sflqklddla gfglvclevf favcncgitk
      181 valedcnlve efkvltcekc rknsefmkqk gneefsqrnf ddaimsytka iefcpmnhll
      241 ygnralclil tkqykkalad gkraiilkpn wpkghyhfck alsllgehkl aleankraqe
      301 lcknifdglk dlvqqneklk ktieeisgiq ehepnqkkll gkkdcssses hlisqeqdel
      361 eedkkgtqsd pkdhrrqkhd trvtdiqgte gkgsslefpp sqshqnkgrp kpksgyseka
      421 rdhfdskies kaiqdklfyt vqkvdlamls kefkslvhdg ytalmdqrch saeqafsqll
      481 silspselkq lnlhvinyvi ivyghatall gigqpealtk aedqfkkiie qyqeerfgcl
      541 ahygigkvyl rqnrfsdald qfvksqtmvn hkivpgvltw pttcqvieet rtenlqlilk
      601 nyieeckfpp epdaicryqq chghskiqif ftdpdfkgfi ritccqqcrv efhiscwkkl
      661 ktmnysdknd kdflqelcft pdcrgliski vifsssglvk cefeqkitkt kgpprasikq
      721 kcsslrklkm kqekkirrkc areearnfak kkieekqmgn epshyndhsd yvldlsagdr
      781 vlqhisrnae qiktavcdas kllkmllswf viseedyisy srtnsmshev meqlisyliq
      841 eknrvktrsf iyvlseleev dpklrkwlkh lnnlglaatk nfllkygqfl kelnlsilta
      901 lwnekygskf dyvttssedk eihdyflkpp iektrcfiwl lednrenfps lhqaldeffd
      961 kmddptiilk krenenistn gikvknknrk knskdsrsil vlssgvstap reeeeiliee
     1021 ntldftnsde pfvipeylre qleefealcd isnsnsyqrl ldnnnldqtc eslyeyfsqi
     1081 leehgpmein nkllvgeyeh fpeetrkvve dkgglkcfll ksprfimvdn liglrkhevl
     1141 ieestnrnet gdneeengia cnvqehssqn klqlnpaake fkplsypnqp riststdltv
     1201 asyetslclp wsfpascelv pslcsqnidt iqnqssfsei lpegiflpqt swsyqyeril
     1261 pvpsqmplms nvvrqpsyiy adrvayqdnd kstisnrkyv lskfipteiq tredfqcqve
     1321 nsvntfyeds favenstdea ecgiqvikte kegrgmplvk tnphtrmiav qvthevadre
     1381 tntlpfhpfe mqhgdilrve kehqvlqeql keaqekyeql qsrsseeiga lkellkksae
     1441 eievskseld wlhqdleikv kkwqqekken qenlkalrnt akkhtdtndr ysktidekek
     1501 qynvylntfl etsnklatek vkleeliqks qdesqeyvnr avkaeisvlk nwketeackl
     1561 ngiaanaean lkmlkslsss sasaaaklks qidsweifis nvkkqlekve aeyegkiqav
     1621 kngvrscltk metveipspp svfakqgrap isdpaiimcs sasaspaslp afsssedqgp
     1681 mhasfnkqaq akptyassks csasgglvkm hskpleasys dkvlancpsg isgsntqnvq
     1741 pnqnlqgnaa vrsrpsglps nkklpkafei iishlqsifp nysssdftaf irdiqrrngn
     1801 tlsdlsldei lsrvtqlild qqnkvlwcvq llpfllcvsd rgnsaahsrk ecklafavkl
     1861 qntnllkilf qhlcrhqqqg dppsq
//
LOCUS       XP_053943451            1542 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase TTC3 isoform X7 [Cuculus canorus].
ACCESSION   XP_053943451
VERSION     XP_053943451.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087476.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1542
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1542
                     /product="E3 ubiquitin-protein ligase TTC3 isoform X7"
                     /calculated_mol_wt=176275
     Region          177..>221
                     /region_name="CpoB"
                     /note="Cell division protein CpoB, coordinates
                     peptidoglycan biosynthesis and outer membrane constriction
                     [Cell cycle control, cell division, chromosome
                     partitioning]; COG1729"
                     /db_xref="CDD:441335"
     Region          244..359
                     /region_name="TTC3_DZIP3_dom"
                     /note="E3 ubiquitin-protein ligase TTC3/DZIP3 domain;
                     pfam19179"
                     /db_xref="CDD:465988"
     Region          <966..1275
                     /region_name="SCP-1"
                     /note="Synaptonemal complex protein 1 (SCP-1); pfam05483"
                     /db_xref="CDD:114219"
     Region          <1053..>1193
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..1542
                     /gene="TTC3"
                     /coded_by="XM_054087476.1:37..4665"
                     /db_xref="GeneID:104059256"
ORIGIN      
        1 mplyltlkll sflisifvcm yyffehvyvs vkylclllig mssksdttst ntlkclwgqs
       61 hqnkgrpkpk sgysekardh fdskieskai qdklfytvqk vdlamlskef kslvhdgyta
      121 lmdqrchsae qafsqllsil spselkqlnl hvinyviivy ghatallgig qpealtkaed
      181 qfkkiieqyq eerfgclahy gigkvylrqn rfsdaldqfv ksqtmvnhki vpgvltwptt
      241 cqvieetrte nlqlilknyi eeckfppepd aicryqqchg hskiqifftd pdfkgfirit
      301 ccqqcrvefh iscwkklktm nysdkndkdf lqelcftpdc rgliskivif sssglvkcef
      361 eqkitktkgp prasikqkcs slrklkmkqe kkirrkcare earnfakkki eekqmgneps
      421 hyndhsdyvl dlsagdrvlq hisrnaeqik tavcdaskll kmllswfvis eedyisysrt
      481 nsmshevmeq lisyliqekn rvktrsfiyv lseleevdpk lrkwlkhlnn lglaatknfl
      541 lkygqflkel nlsiltalwn ekygskfdyv ttssedkeih dyflkppiek trcfiwlled
      601 nrenfpslhq aldeffdkmd dptiilkkre nenistngik vknknrkkns kdsrsilvls
      661 sgvstapree eeilieentl dftnsdepfv ipeylreqle efealcdisn snsyqrlldn
      721 nnldqtcesl yeyfsqilee hgpmeinnkl lvgeyehfpe etrkvvedkg glkcfllksp
      781 rfimvdnlig lrkhevliee stnrnetgdn eeengiacnv qehssqnklq lnpaakefkp
      841 lsypnqpris tstdltvasy etslclpwsf pascelvpsl csqnidtiqn qssfseilpe
      901 giflpqtsws yqyerilpvp sqmplmsnvv rqpsyiyadr vayqdndkst isnrkyvlsk
      961 fipteiqtre dfqcqvensv ntfyedsfav enstdeaecg iqviktekeg rgmplvktnp
     1021 htrmiavqvt hevadretnt lpfhpfemqh gdilrvekeh qvlqeqlkea qekyeqlqsr
     1081 sseeigalke llkksaeeie vskseldwlh qdleikvkkw qqekkenqen lkalrntakk
     1141 htdtndrysk tidekekqyn vylntflets nklatekvkl eeliqksqde sqeyvnravk
     1201 aeisvlknwk eteacklngi aanaeanlkm lkslssssas aaaklksqid sweifisnvk
     1261 kqlekveaey egkiqavkng vrscltkmet veipsppsvf akqgrapisd paiimcssas
     1321 aspaslpafs ssedqgpmha sfnkqaqakp tyasskscsa sgglvkmhsk pleasysdkv
     1381 lancpsgisg sntqnvqpnq nlqgnaavrs rpsglpsnkk lpkafeiiis hlqsifpnys
     1441 ssdftafird iqrrngntls dlsldeilsr vtqlildqqn kvlwcvqllp fllcvsdrgn
     1501 saahsrkeck lafavklqnt nllkilfqhl crhqqqgdpp sq
//
LOCUS       XP_009559157             297 aa            linear   VRT 09-MAR-2023
DEFINITION  vacuolar protein sorting-associated protein 26C isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009559157
VERSION     XP_009559157.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560862.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009559157.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..297
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..297
                     /product="vacuolar protein sorting-associated protein 26C
                     isoform X1"
                     /calculated_mol_wt=32933
     Region          1..283
                     /region_name="Arrestin_N"
                     /note="Arrestin (or S-antigen), N-terminal domain;
                     cl22903"
                     /db_xref="CDD:451447"
     CDS             1..297
                     /gene="VPS26C"
                     /coded_by="XM_009560862.2:99..992"
                     /db_xref="GeneID:104059223"
ORIGIN      
        1 mgtaldikik rankvyrcge vlsgvvvits kdtvqhqgis ltmegsvnlq lsaksvgvfe
       61 afynsvkpiq iinstiemvk pgklpsgkte ipfefplhtk gnkvlyetyh gvfvniqytl
      121 rcdmrrslla kdltktcefi vhspsqkgkv mpspvdftit petlqnvker aslpkflirg
      181 hlsstnciit qpltgelvve naeaavksie lqlvrvetcg caegyardat eiqniqiadg
      241 dvcrglpipi ymvfprlftc ptlettnfkv efevnivvll hddhlitenf slklcrm
//
LOCUS       XP_053943469             255 aa            linear   VRT 09-MAR-2023
DEFINITION  vacuolar protein sorting-associated protein 26C isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053943469
VERSION     XP_053943469.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087494.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..255
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..255
                     /product="vacuolar protein sorting-associated protein 26C
                     isoform X2"
                     /calculated_mol_wt=28420
     Region          <14..241
                     /region_name="Arrestin_N"
                     /note="Arrestin (or S-antigen), N-terminal domain;
                     cl22903"
                     /db_xref="CDD:451447"
     CDS             1..255
                     /gene="VPS26C"
                     /coded_by="XM_054087494.1:208..975"
                     /db_xref="GeneID:104059223"
ORIGIN      
        1 megsvnlqls aksvgvfeaf ynsvkpiqii nstiemvkpg klpsgkteip fefplhtkgn
       61 kvlyetyhgv fvniqytlrc dmrrsllakd ltktcefivh spsqkgkvmp spvdftitpe
      121 tlqnvkeras lpkflirghl sstnciitqp ltgelvvena eaavksielq lvrvetcgca
      181 egyardatei qniqiadgdv crglpipiym vfprlftcpt lettnfkvef evnivvllhd
      241 dhlitenfsl klcrm
//
LOCUS       XP_053943478             255 aa            linear   VRT 09-MAR-2023
DEFINITION  vacuolar protein sorting-associated protein 26C isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053943478
VERSION     XP_053943478.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087503.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..255
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..255
                     /product="vacuolar protein sorting-associated protein 26C
                     isoform X2"
                     /calculated_mol_wt=28420
     Region          <14..241
                     /region_name="Arrestin_N"
                     /note="Arrestin (or S-antigen), N-terminal domain;
                     cl22903"
                     /db_xref="CDD:451447"
     CDS             1..255
                     /gene="VPS26C"
                     /coded_by="XM_054087503.1:204..971"
                     /db_xref="GeneID:104059223"
ORIGIN      
        1 megsvnlqls aksvgvfeaf ynsvkpiqii nstiemvkpg klpsgkteip fefplhtkgn
       61 kvlyetyhgv fvniqytlrc dmrrsllakd ltktcefivh spsqkgkvmp spvdftitpe
      121 tlqnvkeras lpkflirghl sstnciitqp ltgelvvena eaavksielq lvrvetcgca
      181 egyardatei qniqiadgdv crglpipiym vfprlftcpt lettnfkvef evnivvllhd
      241 dhlitenfsl klcrm
//
LOCUS       XP_053943488             255 aa            linear   VRT 09-MAR-2023
DEFINITION  vacuolar protein sorting-associated protein 26C isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053943488
VERSION     XP_053943488.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087513.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..255
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..255
                     /product="vacuolar protein sorting-associated protein 26C
                     isoform X2"
                     /calculated_mol_wt=28420
     Region          <14..241
                     /region_name="Arrestin_N"
                     /note="Arrestin (or S-antigen), N-terminal domain;
                     cl22903"
                     /db_xref="CDD:451447"
     CDS             1..255
                     /gene="VPS26C"
                     /coded_by="XM_054087513.1:88..855"
                     /db_xref="GeneID:104059223"
ORIGIN      
        1 megsvnlqls aksvgvfeaf ynsvkpiqii nstiemvkpg klpsgkteip fefplhtkgn
       61 kvlyetyhgv fvniqytlrc dmrrsllakd ltktcefivh spsqkgkvmp spvdftitpe
      121 tlqnvkeras lpkflirghl sstnciitqp ltgelvvena eaavksielq lvrvetcgca
      181 egyardatei qniqiadgdv crglpipiym vfprlftcpt lettnfkvef evnivvllhd
      241 dhlitenfsl klcrm
//
LOCUS       XP_053943501             169 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphatidylinositol N-acetylglucosaminyltransferase subunit P
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053943501
VERSION     XP_053943501.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087526.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..169
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..169
                     /product="phosphatidylinositol
                     N-acetylglucosaminyltransferase subunit P isoform X1"
                     /calculated_mol_wt=18897
     Region          46..159
                     /region_name="PIG-P"
                     /note="pfam08510"
                     /db_xref="CDD:462498"
     CDS             1..169
                     /gene="PIGP"
                     /coded_by="XM_054087526.1:61..570"
                     /db_xref="GeneID:104059222"
ORIGIN      
        1 maahalrppr wggqgargap ppfvsplevk gkrpamvens paplperaiy gfalflgswf
       61 sfilyliway ipeswlfslg ltywpqkywa valptyllvt igigyillfg inmmstapln
      121 stdtvtdnya kkqqqktfqe eaipalrdip isevnrmffl pekgicnsr
//
LOCUS       XP_053943509             134 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphatidylinositol N-acetylglucosaminyltransferase subunit P
            isoform X2 [Cuculus canorus].
ACCESSION   XP_053943509
VERSION     XP_053943509.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087534.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..134
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..134
                     /product="phosphatidylinositol
                     N-acetylglucosaminyltransferase subunit P isoform X2"
                     /calculated_mol_wt=15254
     Region          11..124
                     /region_name="PIG-P"
                     /note="pfam08510"
                     /db_xref="CDD:462498"
     CDS             1..134
                     /gene="PIGP"
                     /coded_by="XM_054087534.1:66..470"
                     /db_xref="GeneID:104059222"
ORIGIN      
        1 mvenspaplp eraiygfalf lgswfsfily liwayipesw lfslgltywp qkywavalpt
       61 yllvtigigy illfginmms taplnstdtv tdnyakkqqq ktfqeeaipa lrdipisevn
      121 rmfflpekgi cnsr
//
LOCUS       XP_053943517             134 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphatidylinositol N-acetylglucosaminyltransferase subunit P
            isoform X2 [Cuculus canorus].
ACCESSION   XP_053943517
VERSION     XP_053943517.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087542.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..134
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..134
                     /product="phosphatidylinositol
                     N-acetylglucosaminyltransferase subunit P isoform X2"
                     /calculated_mol_wt=15254
     Region          11..124
                     /region_name="PIG-P"
                     /note="pfam08510"
                     /db_xref="CDD:462498"
     CDS             1..134
                     /gene="PIGP"
                     /coded_by="XM_054087542.1:61..465"
                     /db_xref="GeneID:104059222"
ORIGIN      
        1 mvenspaplp eraiygfalf lgswfsfily liwayipesw lfslgltywp qkywavalpt
       61 yllvtigigy illfginmms taplnstdtv tdnyakkqqq ktfqeeaipa lrdipisevn
      121 rmfflpekgi cnsr
//
LOCUS       XP_053943526             134 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphatidylinositol N-acetylglucosaminyltransferase subunit P
            isoform X2 [Cuculus canorus].
ACCESSION   XP_053943526
VERSION     XP_053943526.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087551.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..134
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..134
                     /product="phosphatidylinositol
                     N-acetylglucosaminyltransferase subunit P isoform X2"
                     /calculated_mol_wt=15254
     Region          11..124
                     /region_name="PIG-P"
                     /note="pfam08510"
                     /db_xref="CDD:462498"
     CDS             1..134
                     /gene="PIGP"
                     /coded_by="XM_054087551.1:72..476"
                     /db_xref="GeneID:104059222"
ORIGIN      
        1 mvenspaplp eraiygfalf lgswfsfily liwayipesw lfslgltywp qkywavalpt
       61 yllvtigigy illfginmms taplnstdtv tdnyakkqqq ktfqeeaipa lrdipisevn
      121 rmfflpekgi cnsr
//
LOCUS       XP_053943537             874 aa            linear   VRT 09-MAR-2023
DEFINITION  endoplasmin [Cuculus canorus].
ACCESSION   XP_053943537
VERSION     XP_053943537.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087562.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..874
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..874
                     /product="endoplasmin"
                     /calculated_mol_wt=99917
     Region          160..352
                     /region_name="HATPase_Hsp90-like"
                     /note="Histidine kinase-like ATPase domain of human
                     cytosolic Hsp90 and its homologs including Escherichia
                     coli HtpG, and related domains; cd16927"
                     /db_xref="CDD:340404"
     Site            order(161..162,165,169,244,272)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:340404"
     Site            order(180,184..185,187..188,191,224,226,228,230..231,
                     239..240,242..248,270..276,288,290,321..322,324)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:340404"
     Site            order(240,276)
                     /site_type="other"
                     /note="ATP-lid"
                     /db_xref="CDD:340404"
     Region          334..833
                     /region_name="HSP90"
                     /note="Hsp90 protein; pfam00183"
                     /db_xref="CDD:459703"
     CDS             1..874
                     /gene="HSP90B1"
                     /coded_by="XM_054087562.1:16..2640"
                     /db_xref="GeneID:104060222"
ORIGIN      
        1 mesadwrrrp rsrppraphw prlwrgasrl arggaappaa slikaeggar grsgelgggg
       61 drwlgqrgrl rplslaiamk sgwgialaca lllavsvrad evdvdgtved dlgksregsr
      121 tddevvqree eaiqldglna sqikeireks ekfafqaevn rmmkliinsl yknkeiflre
      181 lisnasdald kirlisltde nalagneelt vkikcdkekn mlhvtdtgig mtkeelvknl
      241 gtiaksgtse flnkmtemqn dgqstselig qfgvgfysaf lvadrvivts khnndtqhiw
      301 esdsnefsvi ndprgntlgr gttitlvlke easdyleldt vknlvkkysq finfpiyvws
      361 sktetveepi eeeeaeakek eetdddeaav eeeeeekkpk tkkvektvwd welmndikpi
      421 wqrpskevee deykafyktf skehddpmay ihftaegevt fksilfvpns aprglfdeyg
      481 skksdfikly vrrvfitddf hdmmpkylnf vkgvvdsddl plnvsretlq qhkllkvirk
      541 klvrktldmi kkiaeekynd tfwkefgtnv klgviedhsn rtrlakllrf qsshhesnlt
      601 sldqyvermk ekqdkiyfma gasrkeaess pfverllkkg yeviyltepv deyciqalpe
      661 fdgkrfqnva kegvkfeese kskenreale kefepllnwm kdkalkdkie kavisqrlte
      721 spcalvasqy gwsgnmerim kaqayqtgkd istnyyasqk ktfeinprhp likdmlrrvk
      781 eneddktvsd lavvlfetat lrsgymlpdt keygdrierm lrlslnidld akveeepeep
      841 edaaeeaeqd eeevdadted setqkestdv kdel
//
LOCUS       XP_053943545             208 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP-ribosylation factor-like protein 8B isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053943545
VERSION     XP_053943545.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087570.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..208
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..208
                     /product="ADP-ribosylation factor-like protein 8B isoform
                     X1"
                     /calculated_mol_wt=23230
     Region          44..202
                     /region_name="Arl10_like"
                     /note="Arf-like 9 (Arl9) and 10 (Arl10) GTPases; cd04159"
                     /db_xref="CDD:206724"
     Site            49..56
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206724"
     Site            order(51..52,56,60,73..80,102,107)
                     /site_type="other"
                     /note="putative GAP interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206724"
     Site            order(52..57,152..153,155..156,185..187)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206724"
     Site            order(61..64,67..77)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206724"
     Site            order(74..78,83,93,97,103,105..107)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206724"
     Site            74
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206724"
     Site            order(75..82,92,103,106..107)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206724"
     Site            order(78..85,87..92)
                     /site_type="active"
                     /note="interswitch region [active]"
                     /db_xref="CDD:206724"
     Site            93..110
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206724"
     Site            93..96
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206724"
     Site            152..155
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206724"
     Site            185..187
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206724"
     CDS             1..208
                     /gene="LOC104055285"
                     /coded_by="XM_054087570.1:150..776"
                     /db_xref="GeneID:104055285"
ORIGIN      
        1 mpsseavplg lgacrrsgal ggmlalvarl lewlrslfwk eemeltlvgl qysgkttllt
       61 vlasgqfted miptvgfnmr kitkgnvtik vwdiggqprf rsmwerycrg vnavvymvda
      121 adlekveask nelhslidkp qlhgipmlvl gnkrdlpgal dekqliekln lsaiqdreic
      181 cysisckekd niditlqwli qhsksrhc
//
LOCUS       XP_053943555             194 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP-ribosylation factor-like protein 8B isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053943555
VERSION     XP_053943555.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087580.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..194
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..194
                     /product="ADP-ribosylation factor-like protein 8B isoform
                     X2"
                     /calculated_mol_wt=21462
     Region          44..>169
                     /region_name="Arl10_like"
                     /note="Arf-like 9 (Arl9) and 10 (Arl10) GTPases; cd04159"
                     /db_xref="CDD:206724"
     Site            49..56
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206724"
     Site            order(51..52,56,60,73..80,102,107)
                     /site_type="other"
                     /note="putative GAP interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206724"
     Site            order(61..64,67..77)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206724"
     Site            order(74..78,83,93,97,103,105..107)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206724"
     Site            74
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206724"
     Site            order(75..82,92,103,106..107)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206724"
     Site            order(78..85,87..92)
                     /site_type="active"
                     /note="interswitch region [active]"
                     /db_xref="CDD:206724"
     Site            93..110
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206724"
     Site            93..96
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206724"
     Site            152..155
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206724"
     CDS             1..194
                     /gene="LOC104055285"
                     /coded_by="XM_054087580.1:153..737"
                     /db_xref="GeneID:104055285"
ORIGIN      
        1 mpsseavplg lgacrrsgal ggmlalvarl lewlrslfwk eemeltlvgl qysgkttllt
       61 vlasgqfted miptvgfnmr kitkgnvtik vwdiggqprf rsmwerycrg vnavvymvda
      121 adlekveask nelhslidkp qlhgipmlvl gnkrdlpgal dekqlieklh yitvaysalq
      181 iktllkktst edns
//
LOCUS       XP_053943567             624 aa            linear   VRT 09-MAR-2023
DEFINITION  plastin-2 [Cuculus canorus].
ACCESSION   XP_053943567
VERSION     XP_053943567.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087592.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..624
                     /product="plastin-2"
                     /calculated_mol_wt=69667
     Region          12..76
                     /region_name="EF-hand_7"
                     /note="EF-hand domain pair; pfam13499"
                     /db_xref="CDD:463900"
     Region          95..239
                     /region_name="CH_PLS_rpt1"
                     /note="first calponin homology (CH) domain found in the
                     plastin family; cd21292"
                     /db_xref="CDD:409141"
     Site            order(119,123,186,188..189,192..193,195,204..212,217,
                     219..220,222..223,226..227,230)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409141"
     Region          248..372
                     /region_name="CH_PLS2_rpt2"
                     /note="second calponin homology (CH) domain found in
                     plastin-2; cd21327"
                     /db_xref="CDD:409176"
     Site            order(263,267,326,328..329,332..333,335,343..351,356,
                     358..359,361..362,365..366,369)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409176"
     Region          371..504
                     /region_name="CH_SF"
                     /note="calponin homology (CH) domain superfamily; cl00030"
                     /db_xref="CDD:469584"
     Site            order(397,452,454..455,458..459,461,475..479,484,486..487,
                     489..490,493..494,497)
                     /site_type="other"
                     /note="actin binding site [polypeptide binding]"
                     /db_xref="CDD:409031"
     Region          508..622
                     /region_name="CH_PLS2_rpt4"
                     /note="fourth calponin homology (CH) domain found in
                     plastin-2; cd21333"
                     /db_xref="CDD:409182"
     Site            order(514,518,575,577..578,581..582,584,592..600,605,
                     607..608,610..611,614..615,618)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409182"
     CDS             1..624
                     /gene="LCP1"
                     /coded_by="XM_054087592.1:255..2129"
                     /db_xref="GeneID:104056503"
ORIGIN      
        1 mastghfsee emaelqeafs kvdisgngfi handltdvlk aanlplpgyk areliqnltt
       61 medgrisfde fisifrnlks ddvaksfrkq inkkegicai ggtseqssag tqhsyseeek
      121 yafvnwinka lekdpdckhv vpmnpetddl fqavgdgivl ckminfsvpd tidertinkk
      181 kltpftiqen lnlalnsasa igchvvniga edlkegkpyl vlgllwqvik iglfadieis
      241 rnealiallr egesledlmk lspeelllrw anyhlenagc nkvtnfssdi kdsrayyhll
      301 nqvapkgdee gipaitidms glrekddvqr aecmlqqaer lgcrqfvtat dvvrgnpkln
      361 lafianlfnk ypalhkpenq didwssiege treertfrnw mnslgvnprv nhlysdlsda
      421 lvifqlyeki kvpvdwnrvn kppypklggn mkklencnya velgknqakf slvgiagqdl
      481 negnrtltla lvwqlmrryt lnilediggg ekvndeiiis wvnetltaag kdstissfkd
      541 skistsmpvl dlidaiqpgs ikydllktad lndeeklnna kyaismarki garvyalped
      601 lvevkpkmvm tvfaclmgkg mkkv
//
LOCUS       XP_053943587            1041 aa            linear   VRT 09-MAR-2023
DEFINITION  toll-like receptor 7 [Cuculus canorus].
ACCESSION   XP_053943587
VERSION     XP_053943587.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087612.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1041
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1041
                     /product="toll-like receptor 7"
                     /calculated_mol_wt=119159
     Region          39..55
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          55..129
                     /region_name="LRR_8"
                     /note="Leucine rich repeat; pfam13855"
                     /db_xref="CDD:404697"
     Region          58..80
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          81..118
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          119..>423
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          119..163
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          164..195
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          196..215
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          217..240
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          241..280
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          281..304
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          305..330
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          331..360
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          361..387
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          388..411
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          488..510
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          499..>778
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          511..535
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          536..559
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          560..589
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          590..643
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          613..635
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          644..668
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          669..692
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          693..715
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          717..740
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          741..759
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          745..>832
                     /region_name="PCC"
                     /note="polycystin cation channel protein; TIGR00864"
                     /db_xref="CDD:188093"
     Region          882..1027
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..1041
                     /gene="LOC104054228"
                     /coded_by="XM_054087612.1:208..3333"
                     /db_xref="GeneID:104054228"
ORIGIN      
        1 msnaltfill flfplllsga wfpkslpcdv kasegtvavd ctyrrlndvp kgiptnatnl
       61 tlsinhiphl yptsfahlkn lveidfrcnc vpirmgpkdh vcntgpnien gsfavlprlk
      121 slyldanqll eiprglpstl sllsleansi fsiqkanlse lgniemlylg qncyyrnpcn
      181 vsfeiektaf lelkkltils lksnnlthvp pnlsstlkel yiynnmiqei qeqdlsdlhn
      241 leildlsgnc prcynapypc tpcpkssiei hakafhslkn lrilrlhsns lhtipsswfk
      301 nirnlkeldl sqnflikeig daqflkfips lveldlsfnf epkmypscln lsktfsslln
      361 letlrlrgyv fkelregnlg pllnlrnltv ldlgtnfiki adlrmfqqfp alkfidlsvn
      421 kispssgesn sngfcsnpri sleqynrqil qemhyfrydv ygrscrskdk eaasyessvn
      481 eeclkygetl dlsrnnvffi npsdfeglss lrclnlsgna isqtlngsef sylsglkyld
      541 fsnnridlly ptafeelkll eildlsnnkh yflaegvthm lsfmkdlthl kklmmnenei
      601 staantgmes hslqilefrg nrldilwmdg naryvsffkn ltsleqldis fnslsfippd
      661 vfkamppelk ilnltnnrmk sfhwgsltyl kklvtldlsn nlltavprel sncsstleel
      721 mlrnnliqhl skhflrgafk lkyldlssnk iemikkssfp envinnlrvl llhgnpfkcn
      781 cdavwfvwwi nqtqvtipll atdvtcagpg ahkgksvvfl dlytceldts ylilyalsla
      841 tllgfmvftv tshlyfwdvw ysyhyctakl kgyqrlsspd scydafiayd nedpavnewv
      901 ltelverlen qkarrfnlcl eerdwlpgqp vfdnlsqsiq lsrktifvlt kkyiksgsfk
      961 ttfymahqrl ldekmdviil iflekalqks ryvrlrkrlc rssvlewptn prsqpyfwqc
     1021 lknavatssa laynkllqet v
//
LOCUS       XP_053943588            1041 aa            linear   VRT 09-MAR-2023
DEFINITION  toll-like receptor 7 [Cuculus canorus].
ACCESSION   XP_053943588
VERSION     XP_053943588.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087613.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1041
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1041
                     /product="toll-like receptor 7"
                     /calculated_mol_wt=119159
     Region          39..55
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          55..129
                     /region_name="LRR_8"
                     /note="Leucine rich repeat; pfam13855"
                     /db_xref="CDD:404697"
     Region          58..80
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          81..118
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          119..>423
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          119..163
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          164..195
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          196..215
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          217..240
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          241..280
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          281..304
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          305..330
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          331..360
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          361..387
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          388..411
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          488..510
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          499..>778
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          511..535
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          536..559
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          560..589
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          590..643
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          613..635
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          644..668
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          669..692
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          693..715
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          717..740
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          741..759
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          745..>832
                     /region_name="PCC"
                     /note="polycystin cation channel protein; TIGR00864"
                     /db_xref="CDD:188093"
     Region          882..1027
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..1041
                     /gene="LOC104054228"
                     /coded_by="XM_054087613.1:208..3333"
                     /db_xref="GeneID:104054228"
ORIGIN      
        1 msnaltfill flfplllsga wfpkslpcdv kasegtvavd ctyrrlndvp kgiptnatnl
       61 tlsinhiphl yptsfahlkn lveidfrcnc vpirmgpkdh vcntgpnien gsfavlprlk
      121 slyldanqll eiprglpstl sllsleansi fsiqkanlse lgniemlylg qncyyrnpcn
      181 vsfeiektaf lelkkltils lksnnlthvp pnlsstlkel yiynnmiqei qeqdlsdlhn
      241 leildlsgnc prcynapypc tpcpkssiei hakafhslkn lrilrlhsns lhtipsswfk
      301 nirnlkeldl sqnflikeig daqflkfips lveldlsfnf epkmypscln lsktfsslln
      361 letlrlrgyv fkelregnlg pllnlrnltv ldlgtnfiki adlrmfqqfp alkfidlsvn
      421 kispssgesn sngfcsnpri sleqynrqil qemhyfrydv ygrscrskdk eaasyessvn
      481 eeclkygetl dlsrnnvffi npsdfeglss lrclnlsgna isqtlngsef sylsglkyld
      541 fsnnridlly ptafeelkll eildlsnnkh yflaegvthm lsfmkdlthl kklmmnenei
      601 staantgmes hslqilefrg nrldilwmdg naryvsffkn ltsleqldis fnslsfippd
      661 vfkamppelk ilnltnnrmk sfhwgsltyl kklvtldlsn nlltavprel sncsstleel
      721 mlrnnliqhl skhflrgafk lkyldlssnk iemikkssfp envinnlrvl llhgnpfkcn
      781 cdavwfvwwi nqtqvtipll atdvtcagpg ahkgksvvfl dlytceldts ylilyalsla
      841 tllgfmvftv tshlyfwdvw ysyhyctakl kgyqrlsspd scydafiayd nedpavnewv
      901 ltelverlen qkarrfnlcl eerdwlpgqp vfdnlsqsiq lsrktifvlt kkyiksgsfk
      961 ttfymahqrl ldekmdviil iflekalqks ryvrlrkrlc rssvlewptn prsqpyfwqc
     1021 lknavatssa laynkllqet v
//
LOCUS       XP_053943604            1041 aa            linear   VRT 09-MAR-2023
DEFINITION  toll-like receptor 7 [Cuculus canorus].
ACCESSION   XP_053943604
VERSION     XP_053943604.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087629.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1041
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1041
                     /product="toll-like receptor 7"
                     /calculated_mol_wt=119396
     Region          39..55
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          55..129
                     /region_name="LRR_8"
                     /note="Leucine rich repeat; pfam13855"
                     /db_xref="CDD:404697"
     Region          58..80
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          81..118
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          119..>423
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          164..195
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          196..215
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          217..240
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          241..280
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          281..304
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          305..330
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          331..360
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          361..387
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          388..411
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          488..510
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          499..>778
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          511..535
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          536..559
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          560..589
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          590..643
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          613..635
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          644..668
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          669..692
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          693..715
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          717..740
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          741..759
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          745..>832
                     /region_name="PCC"
                     /note="polycystin cation channel protein; TIGR00864"
                     /db_xref="CDD:188093"
     Region          882..1027
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..1041
                     /gene="LOC104054906"
                     /coded_by="XM_054087629.1:153..3278"
                     /db_xref="GeneID:104054906"
ORIGIN      
        1 msnaltfill flfpsllsga wfpkslpcdv kasegtvavd ctyrrlndvp kgiptnatnl
       61 tlsinhiphl yptsfahlkn lveidfrcnc vpvklgpkdr vcntrpnien gsfvvlprlk
      121 slyldanqll eiprglpstl sllsleansi fsiqkanlse lgniemlylg qncyyrnpcn
      181 vsfeiektaf lelkkltils lksnnlthvp pnlsstlkel yiynnmiqei qeqdlsdlhn
      241 leildlsgnc prcynapypc tpcpkssiei hakafhslkn lrilrlhsns lhtipsswfk
      301 nirnlkeldl sqnflikeig daqflkfips lveldlsfnf epktyqpcln lsktfsslsn
      361 letlrlrgyv fkelregnlg pllnlrnltv ldlgtnfiki adlrmfqqfp alkfidlsvn
      421 kispssgdtn sngfcsnpri sleqynrqil qemhyfrydv yerscrskdk eaasyessvn
      481 eeclkygetl dlsrnnvffv npsdfeglss lrclnlsdna isqflngsef sylsglkyld
      541 fsnnridlly ptafeelkll eildlsnnkh yflaegvthm lsfmkdlthl kklmmnenei
      601 staantgmes hslqilefrg nrldilwmdg naryvsffkn ltsleqldis fnslsfippd
      661 vfkamppelk ilnltnnrmk sfhwgsltyl kklvtldlsn nlltavprel sncssmleel
      721 mlrnnliqhl skhflrgafk lkyldlssnk iemikkssfp envinnlrvl llhgnpfkcn
      781 cdavwfvwwi nqtqvtipll atdvtcagpg ahkgksvvfl dlytceldts ylilyalsla
      841 tllgfmvftv tshlyfwdvw ysyhyctakl kgyqrlsspd scydafiayd nedpavnewv
      901 ltelverlen qkarrfnlcl eerdwlpgqp vfdnlsqsiq lsrktifvlt kkyiksgsfk
      961 ttfymahqrl ldekmdviil iflekalqks ryvrlrkrlc rssvlewptn prsqpyfwqc
     1021 lknavatssa laynkllqet v
//
LOCUS       XP_053943625             106 aa            linear   VRT 09-MAR-2023
DEFINITION  apovitellenin-1 [Cuculus canorus].
ACCESSION   XP_053943625
VERSION     XP_053943625.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087650.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..106
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..106
                     /product="apovitellenin-1"
                     /calculated_mol_wt=11894
     Region          25..103
                     /region_name="Apo-VLDL-II"
                     /note="Apovitellenin I (Apo-VLDL-II); pfam05418"
                     /db_xref="CDD:428460"
     CDS             1..106
                     /gene="LOC104055791"
                     /coded_by="XM_054087650.1:154..474"
                     /db_xref="GeneID:104055791"
ORIGIN      
        1 mlqsralvia lilllsttlp evqsksvfer drrdwlvvpd aiaayiyeav nkvspkvgqf
       61 lvdaaqtpvv vgtrnflire ttklsilaeq mmekiknlwy tkvlgy
//
LOCUS       XP_009555264             106 aa            linear   VRT 09-MAR-2023
DEFINITION  apovitellenin-1 [Cuculus canorus].
ACCESSION   XP_009555264
VERSION     XP_009555264.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556969.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..106
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..106
                     /product="apovitellenin-1"
                     /calculated_mol_wt=11894
     Region          25..103
                     /region_name="Apo-VLDL-II"
                     /note="Apovitellenin I (Apo-VLDL-II); pfam05418"
                     /db_xref="CDD:428460"
     CDS             1..106
                     /gene="LOC104055791"
                     /coded_by="XM_009556969.2:84..404"
                     /db_xref="GeneID:104055791"
ORIGIN      
        1 mlqsralvia lilllsttlp evqsksvfer drrdwlvvpd aiaayiyeav nkvspkvgqf
       61 lvdaaqtpvv vgtrnflire ttklsilaeq mmekiknlwy tkvlgy
//
LOCUS       XP_053943640             684 aa            linear   VRT 09-MAR-2023
DEFINITION  GTP-binding protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053943640
VERSION     XP_053943640.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087665.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..684
                     /product="GTP-binding protein 1 isoform X1"
                     /calculated_mol_wt=73667
     Region          79..576
                     /region_name="GTPBP1"
                     /note="GTPase [General function prediction only]; COG5258"
                     /db_xref="CDD:444076"
     CDS             1..684
                     /gene="GTPBP1"
                     /coded_by="XM_054087665.1:18..2072"
                     /db_xref="GeneID:104065891"
ORIGIN      
        1 maaaersrsp grgspvpacm fapepgspgg gprvaaaaaa cplraafdae dgealngepd
       61 idltsklvmv sptseqydsl lrqmseride gcgetiyvig qgsdgteygl seadmeasya
      121 tlksmaeqie advillrehq eaggkvrdyl vrkrvgdndf levriavvgn vdagkstllg
      181 vlthgeldng rgfarqklfr hkheiesgrt ssvgndilgf dsegnvvnkp dshggslewt
      241 kicekstkvi tfidlaghek ylkttvfgmt ghlpdfcmlm vgsnagivgm tkehlglala
      301 lnvpvfvvvt kidmcpanil qetlkllqrl lkspgcrkip vlvqskddvi vtasnfsser
      361 mcpifqisnv tgenldllkm flnllsprts yreeepaefq iddtysvpgv gtvvsgttlr
      421 gliklndtll lgpdplgnfl piavksihrk rmpvkevrgg qtasfalkki krssirkgmv
      481 mvsprlnpqa swefeaeilv lhhpttispr yqamvhcgsi rqtatilsmd kdclrtgdka
      541 tvhfrfiktp eylhidqrlv fregrtkavg titkllqttn nspmnskpqq ikmqstkkga
      601 vtkredsvlp agtaaggppa gdeapsaaaa altptvlqpl paldeephir egnkskaggg
      661 srrrggqrhk vksqgacvtp asgc
//
LOCUS       XP_009566720             670 aa            linear   VRT 09-MAR-2023
DEFINITION  GTP-binding protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_009566720
VERSION     XP_009566720.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568425.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566720.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..670
                     /product="GTP-binding protein 1 isoform X2"
                     /calculated_mol_wt=72080
     Region          79..576
                     /region_name="GTPBP1"
                     /note="GTPase [General function prediction only]; COG5258"
                     /db_xref="CDD:444076"
     CDS             1..670
                     /gene="GTPBP1"
                     /coded_by="XM_009568425.2:18..2030"
                     /db_xref="GeneID:104065891"
ORIGIN      
        1 maaaersrsp grgspvpacm fapepgspgg gprvaaaaaa cplraafdae dgealngepd
       61 idltsklvmv sptseqydsl lrqmseride gcgetiyvig qgsdgteygl seadmeasya
      121 tlksmaeqie advillrehq eaggkvrdyl vrkrvgdndf levriavvgn vdagkstllg
      181 vlthgeldng rgfarqklfr hkheiesgrt ssvgndilgf dsegnvvnkp dshggslewt
      241 kicekstkvi tfidlaghek ylkttvfgmt ghlpdfcmlm vgsnagivgm tkehlglala
      301 lnvpvfvvvt kidmcpanil qetlkllqrl lkspgcrkip vlvqskddvi vtasnfsser
      361 mcpifqisnv tgenldllkm flnllsprts yreeepaefq iddtysvpgv gtvvsgttlr
      421 gliklndtll lgpdplgnfl piavksihrk rmpvkevrgg qtasfalkki krssirkgmv
      481 mvsprlnpqa swefeaeilv lhhpttispr yqamvhcgsi rqtatilsmd kdclrtgdka
      541 tvhfrfiktp eylhidqrlv fregrtkavg titkllqttn nspmnskpqq ikmqstkkga
      601 vtkredsvlp agtaaggppa gdeapsaaaa altptvlqpl skagggsrrr ggqrhkvksq
      661 gacvtpasgc
//
LOCUS       XP_053943662            1240 aa            linear   VRT 09-MAR-2023
DEFINITION  AF4/FMR2 family member 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053943662
VERSION     XP_053943662.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087687.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1240
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1240
                     /product="AF4/FMR2 family member 3 isoform X1"
                     /calculated_mol_wt=135087
     Region          20..501
                     /region_name="AF-4"
                     /note="AF-4 proto-oncoprotein N-terminal region;
                     pfam05110"
                     /db_xref="CDD:461550"
     Region          <508..746
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          981..1239
                     /region_name="AF-4_C"
                     /note="AF-4 proto-oncoprotein C-terminal region;
                     pfam18876"
                     /db_xref="CDD:465894"
     CDS             1..1240
                     /gene="AFF3"
                     /coded_by="XM_054087687.1:94..3816"
                     /db_xref="GeneID:104056701"
ORIGIN      
        1 mdsfdlallq ewdldslcvy epdrnvlrrk ewerrnqeaq qedgtfntsy slfsepyktn
       61 kgdelsnriq ntlgnydemk dlltdrsnqs hlvgvpkpgv pqtplpkpde hliadsrppp
      121 pppvssttts tpaalpaqqs ksttmvwqka ghnaasdsqq rvskhghrsl eshkgdfkla
      181 nqktsleklk ryasspisss sntaqqsslr gtlgenvnrv qqpaklncss eggaqvqerp
      241 akhsgghcvq nfppslaskp slvqqkptay vrpmdgqdqa pdespklklp aettksyrgv
      301 psnkpdsart kskiakfsip kqeedsgtgd nscieeilre mthswpppls aihtpgkaeq
      361 nkfafpnkes qqgstghsnt rksdvepksp eksathtsml eddlklssde eendqqaaqr
      421 salrvlsdss lvvpqsnara sglsskgsss ssssesetss esdsesesss sesdgskpsh
      481 ysspepepps snkwqldkwl nkvtphkapi lthhdspale phpyygvvka erqesektpv
      541 aspvehhsge srttattivg drprprtank apgskggrqk sppaadsgpp rraagkkvpr
      601 rvertsagds phchgteepp gshsfpesta geatrarpgs sggssgsssg gcraghrrep
      661 rsatasekrr argpsktapk skefietess ssssssdsgs eleqedrplp kaqavagaep
      721 rtkdtgtsaa skphggcsaf gsinartsse iakeleeqfy tlvpfgrnel lsplkdsdev
      781 kslwvnidla llsriperlp eeplvmsaga nqaaslpqgn sadpptekgl pksrrkrkce
      841 neeeckdikk thlerenssr laasahsitt anhcnmnens laipinknek mlrspvspls
      901 daskhkysnd dltsssrpng ssllpsisss kkhkaeiqsq phpgdfnkai hintenfllc
      961 nkpqsqtepw splsstprdc rrtklifddm prnadyfmqe akrkkhkada mvekfgkaln
     1021 yaeaalsfie cgnameqgpm eskspytmys etveliryav rlkthsgpna tpedkqlaal
     1081 cyrclallyw rmfrlkrdha vkyskaliey fknsskaaqn pspwgasgks tgtpspmsps
     1141 pspvssvgsq gstgapspsp iisipqrihq maanhvsitn silhsydywe madnlakenr
     1201 dffndldalm gpitlhssme hlvqytqqgl hwvrnsahls
//
LOCUS       XP_053943669            1239 aa            linear   VRT 09-MAR-2023
DEFINITION  AF4/FMR2 family member 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053943669
VERSION     XP_053943669.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087694.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1239
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1239
                     /product="AF4/FMR2 family member 3 isoform X2"
                     /calculated_mol_wt=135000
     Region          20..500
                     /region_name="AF-4"
                     /note="AF-4 proto-oncoprotein N-terminal region;
                     pfam05110"
                     /db_xref="CDD:461550"
     Region          <507..745
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          980..1238
                     /region_name="AF-4_C"
                     /note="AF-4 proto-oncoprotein C-terminal region;
                     pfam18876"
                     /db_xref="CDD:465894"
     CDS             1..1239
                     /gene="AFF3"
                     /coded_by="XM_054087694.1:94..3813"
                     /db_xref="GeneID:104056701"
ORIGIN      
        1 mdsfdlallq ewdldslcvy epdrnvlrrk ewerrnqeaq qedgtfntsy slfsepyktn
       61 kgdelsnriq ntlgnydemk dlltdrsnqs hlvgvpkpgv pqtplpkpde hliadsrppp
      121 pppvssttts tpaalpaqqs ksttmvwqka ghnaasdsqq rvskhghrsl eshkgdfkla
      181 nqktsleklk ryasspisss sntaqqsslr gtlgenvnrv qqpaklncss eggaqvqerp
      241 akhsgghcvq nfppslaskp slvqqkptay vrpmdgqdqa pdespklklp aettksyrgv
      301 psnkpdsart kskiakfsip kqeedsgtgd nscieeilre mthswpppls aihtpgkaeq
      361 nkfafpnkes qqgstghsnt rksdvepksp eksathtsml eddlklssde eendqqaaqr
      421 salrvlsdsl vvpqsnaras glsskgssss sssesetsse sdsesessss esdgskpshy
      481 sspepeppss nkwqldkwln kvtphkapil thhdspalep hpyygvvkae rqesektpva
      541 spvehhsges rttattivgd rprprtanka pgskggrqks ppaadsgppr raagkkvprr
      601 vertsagdsp hchgteeppg shsfpestag eatrarpgss ggssgsssgg craghrrepr
      661 satasekrra rgpsktapks kefietesss sssssdsgse leqedrplpk aqavagaepr
      721 tkdtgtsaas kphggcsafg sinartssei akeleeqfyt lvpfgrnell splkdsdevk
      781 slwvnidlal lsriperlpe eplvmsagan qaaslpqgns adpptekglp ksrrkrkcen
      841 eeeckdikkt hlerenssrl aasahsitta nhcnmnensl aipinknekm lrspvsplsd
      901 askhkysndd ltsssrpngs sllpsisssk khkaeiqsqp hpgdfnkaih intenfllcn
      961 kpqsqtepws plsstprdcr rtklifddmp rnadyfmqea krkkhkadam vekfgkalny
     1021 aeaalsfiec gnameqgpme skspytmyse tveliryavr lkthsgpnat pedkqlaalc
     1081 yrclallywr mfrlkrdhav kyskalieyf knsskaaqnp spwgasgkst gtpspmspsp
     1141 spvssvgsqg stgapspspi isipqrihqm aanhvsitns ilhsydywem adnlakenrd
     1201 ffndldalmg pitlhssmeh lvqytqqglh wvrnsahls
//
LOCUS       XP_053943675            1239 aa            linear   VRT 09-MAR-2023
DEFINITION  AF4/FMR2 family member 3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053943675
VERSION     XP_053943675.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087700.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1239
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1239
                     /product="AF4/FMR2 family member 3 isoform X3"
                     /calculated_mol_wt=134959
     Region          20..500
                     /region_name="AF-4"
                     /note="AF-4 proto-oncoprotein N-terminal region;
                     pfam05110"
                     /db_xref="CDD:461550"
     Region          <507..745
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          980..1238
                     /region_name="AF-4_C"
                     /note="AF-4 proto-oncoprotein C-terminal region;
                     pfam18876"
                     /db_xref="CDD:465894"
     CDS             1..1239
                     /gene="AFF3"
                     /coded_by="XM_054087700.1:94..3813"
                     /db_xref="GeneID:104056701"
ORIGIN      
        1 mdsfdlallq ewdldslcvy epdrnvlrrk ewerrnqeaq qedgtfntsy slfsepyktn
       61 kgdelsnriq ntlgnydemk dlltdrsnqs hlvgvpkpgv pqtplpkpde hliadsrppp
      121 pppvssttts tpaalpaqqs ksttmvwqka ghnaasdsqq rvskhghrsl eshkgdfkla
      181 nqktsleklk ryasspisss sntaqqsslr gtlgenvnrv qqpaklncss eggaqvqerp
      241 akhsgghcvq nfppslaskp slvqqkptay vrpmdgqdqa pdespklklp aettksyrgv
      301 psnkpdsart kskiakfsip kqeedsgtgd nscieeilre mthswpppls aihtpgkaeq
      361 nkfafpnkes qqgstghsnt rksdvepksp eksathtsml eddlklssde eendqaaqrs
      421 alrvlsdssl vvpqsnaras glsskgssss sssesetsse sdsesessss esdgskpshy
      481 sspepeppss nkwqldkwln kvtphkapil thhdspalep hpyygvvkae rqesektpva
      541 spvehhsges rttattivgd rprprtanka pgskggrqks ppaadsgppr raagkkvprr
      601 vertsagdsp hchgteeppg shsfpestag eatrarpgss ggssgsssgg craghrrepr
      661 satasekrra rgpsktapks kefietesss sssssdsgse leqedrplpk aqavagaepr
      721 tkdtgtsaas kphggcsafg sinartssei akeleeqfyt lvpfgrnell splkdsdevk
      781 slwvnidlal lsriperlpe eplvmsagan qaaslpqgns adpptekglp ksrrkrkcen
      841 eeeckdikkt hlerenssrl aasahsitta nhcnmnensl aipinknekm lrspvsplsd
      901 askhkysndd ltsssrpngs sllpsisssk khkaeiqsqp hpgdfnkaih intenfllcn
      961 kpqsqtepws plsstprdcr rtklifddmp rnadyfmqea krkkhkadam vekfgkalny
     1021 aeaalsfiec gnameqgpme skspytmyse tveliryavr lkthsgpnat pedkqlaalc
     1081 yrclallywr mfrlkrdhav kyskalieyf knsskaaqnp spwgasgkst gtpspmspsp
     1141 spvssvgsqg stgapspspi isipqrihqm aanhvsitns ilhsydywem adnlakenrd
     1201 ffndldalmg pitlhssmeh lvqytqqglh wvrnsahls
//
LOCUS       XP_053943687             503 aa            linear   VRT 09-MAR-2023
DEFINITION  actin-binding protein WASF3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053943687
VERSION     XP_053943687.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087712.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..503
                     /product="actin-binding protein WASF3 isoform X1"
                     /calculated_mol_wt=55580
     Region          438..503
                     /region_name="WH2_WAVE-3"
                     /note="Wiskott Aldrich syndrome homology region 2 (WH2
                     motif) found in Wiskott-Aldrich Syndrome Protein Family
                     Member 3 (WASP-3 or WAVE3); cd22073"
                     /db_xref="CDD:409216"
     Site            order(441..442,444..446,448..450,455..458)
                     /site_type="other"
                     /note="actin-binding motif [polypeptide binding]"
                     /db_xref="CDD:409216"
     Region          455..458
                     /region_name="actin-binding sequence"
                     /note="actin-binding sequence [structural motif]"
                     /db_xref="CDD:409216"
     CDS             1..503
                     /gene="WASF3"
                     /coded_by="XM_054087712.1:299..1810"
                     /db_xref="GeneID:104064158"
ORIGIN      
        1 mplvkrniep rhlcrgalpe gitselecvt nstlaaiirq lsslskhaed ifgelfnean
       61 sfyiranslq dridrlavkv tqldstveev slqdinmkka fksstiqdqq vvsknsipnp
      121 vadiynqsdk ppplnilspy rddkkdglkf ytdpsyffdl wkekmlqdte dkrkekrrqk
      181 eqkridgttr evkkvrkarn rrqewnmmay dkelrpdnrl sqsvyhgass egslspdtrs
      241 hasdvtdysy patpnhslhq qiampsygtg dgpqymaasq sheheyrpps ttvrhatlnr
      301 pqqppppppq psdgqhssvp pmvpaeygml paqmvdyynp tgpppppppp mipsaqtafv
      361 splqlpvpps hsglvtgsay aathpppssg livtappppg ppppppgppa tgsslssspm
      421 haspateakr hepaqppisd arsdllaair mgiqlkkvqe qreqeakrep vgndvatils
      481 rriaveysds dddsefdend wsd
//
LOCUS       XP_053943692             503 aa            linear   VRT 09-MAR-2023
DEFINITION  actin-binding protein WASF3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053943692
VERSION     XP_053943692.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087717.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..503
                     /product="actin-binding protein WASF3 isoform X1"
                     /calculated_mol_wt=55580
     Region          438..503
                     /region_name="WH2_WAVE-3"
                     /note="Wiskott Aldrich syndrome homology region 2 (WH2
                     motif) found in Wiskott-Aldrich Syndrome Protein Family
                     Member 3 (WASP-3 or WAVE3); cd22073"
                     /db_xref="CDD:409216"
     Site            order(441..442,444..446,448..450,455..458)
                     /site_type="other"
                     /note="actin-binding motif [polypeptide binding]"
                     /db_xref="CDD:409216"
     Region          455..458
                     /region_name="actin-binding sequence"
                     /note="actin-binding sequence [structural motif]"
                     /db_xref="CDD:409216"
     CDS             1..503
                     /gene="WASF3"
                     /coded_by="XM_054087717.1:194..1705"
                     /db_xref="GeneID:104064158"
ORIGIN      
        1 mplvkrniep rhlcrgalpe gitselecvt nstlaaiirq lsslskhaed ifgelfnean
       61 sfyiranslq dridrlavkv tqldstveev slqdinmkka fksstiqdqq vvsknsipnp
      121 vadiynqsdk ppplnilspy rddkkdglkf ytdpsyffdl wkekmlqdte dkrkekrrqk
      181 eqkridgttr evkkvrkarn rrqewnmmay dkelrpdnrl sqsvyhgass egslspdtrs
      241 hasdvtdysy patpnhslhq qiampsygtg dgpqymaasq sheheyrpps ttvrhatlnr
      301 pqqppppppq psdgqhssvp pmvpaeygml paqmvdyynp tgpppppppp mipsaqtafv
      361 splqlpvpps hsglvtgsay aathpppssg livtappppg ppppppgppa tgsslssspm
      421 haspateakr hepaqppisd arsdllaair mgiqlkkvqe qreqeakrep vgndvatils
      481 rriaveysds dddsefdend wsd
//
LOCUS       XP_053943702             503 aa            linear   VRT 09-MAR-2023
DEFINITION  actin-binding protein WASF3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053943702
VERSION     XP_053943702.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087727.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..503
                     /product="actin-binding protein WASF3 isoform X1"
                     /calculated_mol_wt=55580
     Region          438..503
                     /region_name="WH2_WAVE-3"
                     /note="Wiskott Aldrich syndrome homology region 2 (WH2
                     motif) found in Wiskott-Aldrich Syndrome Protein Family
                     Member 3 (WASP-3 or WAVE3); cd22073"
                     /db_xref="CDD:409216"
     Site            order(441..442,444..446,448..450,455..458)
                     /site_type="other"
                     /note="actin-binding motif [polypeptide binding]"
                     /db_xref="CDD:409216"
     Region          455..458
                     /region_name="actin-binding sequence"
                     /note="actin-binding sequence [structural motif]"
                     /db_xref="CDD:409216"
     CDS             1..503
                     /gene="WASF3"
                     /coded_by="XM_054087727.1:430..1941"
                     /db_xref="GeneID:104064158"
ORIGIN      
        1 mplvkrniep rhlcrgalpe gitselecvt nstlaaiirq lsslskhaed ifgelfnean
       61 sfyiranslq dridrlavkv tqldstveev slqdinmkka fksstiqdqq vvsknsipnp
      121 vadiynqsdk ppplnilspy rddkkdglkf ytdpsyffdl wkekmlqdte dkrkekrrqk
      181 eqkridgttr evkkvrkarn rrqewnmmay dkelrpdnrl sqsvyhgass egslspdtrs
      241 hasdvtdysy patpnhslhq qiampsygtg dgpqymaasq sheheyrpps ttvrhatlnr
      301 pqqppppppq psdgqhssvp pmvpaeygml paqmvdyynp tgpppppppp mipsaqtafv
      361 splqlpvpps hsglvtgsay aathpppssg livtappppg ppppppgppa tgsslssspm
      421 haspateakr hepaqppisd arsdllaair mgiqlkkvqe qreqeakrep vgndvatils
      481 rriaveysds dddsefdend wsd
//
LOCUS       XP_053943712             503 aa            linear   VRT 09-MAR-2023
DEFINITION  actin-binding protein WASF3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053943712
VERSION     XP_053943712.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087737.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..503
                     /product="actin-binding protein WASF3 isoform X1"
                     /calculated_mol_wt=55580
     Region          438..503
                     /region_name="WH2_WAVE-3"
                     /note="Wiskott Aldrich syndrome homology region 2 (WH2
                     motif) found in Wiskott-Aldrich Syndrome Protein Family
                     Member 3 (WASP-3 or WAVE3); cd22073"
                     /db_xref="CDD:409216"
     Site            order(441..442,444..446,448..450,455..458)
                     /site_type="other"
                     /note="actin-binding motif [polypeptide binding]"
                     /db_xref="CDD:409216"
     Region          455..458
                     /region_name="actin-binding sequence"
                     /note="actin-binding sequence [structural motif]"
                     /db_xref="CDD:409216"
     CDS             1..503
                     /gene="WASF3"
                     /coded_by="XM_054087737.1:227..1738"
                     /db_xref="GeneID:104064158"
ORIGIN      
        1 mplvkrniep rhlcrgalpe gitselecvt nstlaaiirq lsslskhaed ifgelfnean
       61 sfyiranslq dridrlavkv tqldstveev slqdinmkka fksstiqdqq vvsknsipnp
      121 vadiynqsdk ppplnilspy rddkkdglkf ytdpsyffdl wkekmlqdte dkrkekrrqk
      181 eqkridgttr evkkvrkarn rrqewnmmay dkelrpdnrl sqsvyhgass egslspdtrs
      241 hasdvtdysy patpnhslhq qiampsygtg dgpqymaasq sheheyrpps ttvrhatlnr
      301 pqqppppppq psdgqhssvp pmvpaeygml paqmvdyynp tgpppppppp mipsaqtafv
      361 splqlpvpps hsglvtgsay aathpppssg livtappppg ppppppgppa tgsslssspm
      421 haspateakr hepaqppisd arsdllaair mgiqlkkvqe qreqeakrep vgndvatils
      481 rriaveysds dddsefdend wsd
//
LOCUS       XP_053943720             500 aa            linear   VRT 09-MAR-2023
DEFINITION  actin-binding protein WASF3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053943720
VERSION     XP_053943720.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087745.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..500
                     /product="actin-binding protein WASF3 isoform X2"
                     /calculated_mol_wt=55432
     Region          435..500
                     /region_name="WH2_WAVE-3"
                     /note="Wiskott Aldrich syndrome homology region 2 (WH2
                     motif) found in Wiskott-Aldrich Syndrome Protein Family
                     Member 3 (WASP-3 or WAVE3); cd22073"
                     /db_xref="CDD:409216"
     Site            order(438..439,441..443,445..447,452..455)
                     /site_type="other"
                     /note="actin-binding motif [polypeptide binding]"
                     /db_xref="CDD:409216"
     Region          452..455
                     /region_name="actin-binding sequence"
                     /note="actin-binding sequence [structural motif]"
                     /db_xref="CDD:409216"
     CDS             1..500
                     /gene="WASF3"
                     /coded_by="XM_054087745.1:299..1801"
                     /db_xref="GeneID:104064158"
ORIGIN      
        1 mplvkrniep rhlcrgalpe gitselecvt nstlaaiirq lsslskhaed ifgelfnean
       61 sfyiranslq dridrlavkv tqldstveev slqdinmkka fksstiqdqq vvsknsipnp
      121 vadiynqsdk ppplnilspy rddkkdglkf ytdpsyffdl wkekmlqdte dkrkekrrqk
      181 rekhklnpnr nqqinvrkvr trkeewerrk mgiefmsdak kmeqagsmke dkmpkgshas
      241 dvtdysypat pnhslhqqia mpsygtgdgp qymaasqshe heyrppsttv rhatlnrpqq
      301 ppppppqpsd gqhssvppmv paeygmlpaq mvdyynptgp pppppppmip saqtafvspl
      361 qlpvppshsg lvtgsayaat hpppssgliv tappppgppp pppgppatgs slssspmhas
      421 pateakrhep aqppisdars dllaairmgi qlkkvqeqre qeakrepvgn dvatilsrri
      481 aveysdsddd sefdendwsd
//
LOCUS       XP_053943731            1330 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-binding cassette sub-family C member 4 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053943731
VERSION     XP_053943731.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087756.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1330
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1330
                     /product="ATP-binding cassette sub-family C member 4
                     isoform X1"
                     /calculated_mol_wt=150131
     Region          2..1289
                     /region_name="PLN03130"
                     /note="ABC transporter C family member; Provisional"
                     /db_xref="CDD:215595"
     CDS             1..1330
                     /gene="ABCC4"
                     /coded_by="XM_054087756.1:71..4063"
                     /db_xref="GeneID:104054874"
ORIGIN      
        1 mepvpreekp nplqdanlcs rlffwwlnpl fiighkrkle eddmykvlpe dsseklgeel
       61 qwywdkevqk akkrgktphl tkaiilcywk sylvfgiftm ieetlkiiqp iflgkiinyf
      121 enydfsdeia lkfaycyaaa lsvctlilai mhhlyfyhvq ragmklrvam chmiyrkalr
      181 lsnvamaktt tgqivnllsn dvnkfdqvti flhflwagpi qavavtvllw meigpsclag
      241 mavliillpv qtcigrlfss lrsktatltd vrirtmnevi sgmriikmya weksfaelvn
      301 glrrkeiamv lkssylrgln lasffvaski tvfmtfmayv llgndisasr vfvavslyga
      361 vrltvtlffp aavervseav vsirriknfl vldevshfqp qlhgnnenii lhvqdltcyw
      421 dkslespalq qlsftvrrge llavigpvga gkssllsail gelpkdkgli nvtgriayvs
      481 qqpwvfsgtv rsnilfdkey ekekyekvlk vcalkkdlel ladgdltvig drgatlsggq
      541 karvnlarav yqdadiylld dplsavdaev grhlfekcic qalhqkisvl vthqlqylra
      601 anqililkdg kmvgkgtyse flrsgidfas llkkdeeieq psvpgtpnlk sarsrtfses
      661 svwsqdssvh sqkdgaveqp paentlaalp eesrsegkit fkayrkyfta ganyfvifil
      721 lvfnilaqva yvlqdwwlsy wanhqeklnv ttngnngane tehldlnfyl giyagltvat
      781 ilfgiirsll vfqvlvnsgq nlhnkmfqai lkapvlffdr npigrilnrf skdighlddl
      841 lpltfldfvq tllqifgvva vavavipwil ipliplfvlf iflrryfldt srdikrlest
      901 trspvfshls sslqglwtir alkaeerfqk lfdahqdlhs eawflfltts rwfavrldai
      961 caifvivvaf gslllaktln agqvglalsy aitlmgtfqw gvrqsaeven lmisvervme
     1021 ytelekeapw etnkhpppew psqgmiafen vnftysldgp lvlrhlsvli kpkekvgivg
     1081 rtgagkssli aalfrlaepd gkiwidkylt selglhdlrk kisiipqepv lftgtmrknl
     1141 dpfneytdee lwnaleevql kevvedlpnk metqlaesgs nfsvgqrqlv claravlkkn
     1201 riliideata nvdprtdefi qktirekfah ctvltiahrl ntiidsdrim vldagrlkey
     1261 gepyillqeq dglfykmvqq vgkteaasli etakrvyfsk nypevvqngq patdssldps
     1321 sglcitetal
//
LOCUS       XP_053943734            1108 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-binding cassette sub-family C member 4 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053943734
VERSION     XP_053943734.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087759.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1108
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1108
                     /product="ATP-binding cassette sub-family C member 4
                     isoform X2"
                     /calculated_mol_wt=125122
     Region          10..1075
                     /region_name="MRP_assoc_pro"
                     /note="multi drug resistance-associated protein (MRP);
                     TIGR00957"
                     /db_xref="CDD:188098"
     CDS             1..1108
                     /gene="ABCC4"
                     /coded_by="XM_054087759.1:71..3397"
                     /db_xref="GeneID:104054874"
ORIGIN      
        1 mepvpreekp nplqdanlcs rlffwwlnpl fiighkrkle eddmykvlpe dsseklgeel
       61 qwywdkevqk akkrgktphl tkaiilcywk sylvfgiftm ieetlkiiqp iflgkiinyf
      121 enydfsdeia lkfaycyaaa lsvctlilai mhhlyfyhvq ragmklrvam chmiyrkalr
      181 lsnvamaktt tgqivnllsn dvnkfdqvti flhflwagpi qavavtvllw meigpsclag
      241 mavliillpv qtcigrlfss lrsktatltd vrirtmnevi sgmriikmya weksfaelvn
      301 glrrkeiamv lkssylrgln lasffvaski tvfmtfmayv llgndisasr vfvavslyga
      361 vrltvtlffp aavervseav vsirriknfl vldevshfqp qlhgnnenii lhvqdltcyw
      421 dkslespalq qlsftvrrge llavigpvga gkssllsail gelpkdkgli nvtgriayvs
      481 qqpwvfsgtv rsnilfdkey ekekyekvlk vcalkkdlel ladgdltvig drgatlsggq
      541 karvnlarav yqdadiylld dplsavdaev grhlfekcic qalhqkisvl vthqlqylra
      601 anqililkdg kmvgkgtyse flrsgidfas llkkdeeieq psvpgtpnlk sarsrtfses
      661 svwsqdssvh sqkdgaveqp paentlaalp eesrsegkit fkayrkyfta ganyfvifil
      721 lvfnilaqva yvlqdwwlsy wanhqeklnv ttngnngane tehldlnfyl giyagltvat
      781 ilfgiirsll vfqvlvnsgq nlhnkmfqai lkapvlffdr npigrilnrf skdighlddl
      841 lpltfldfvq tllqifgvva vavavipwil ipliplfvlf iflrryfldt srdikrlest
      901 trspvfshls sslqglwtir alkaeerfqk lfdahqdlhs eawflfltts rwfavrldai
      961 caifvivvaf gslllaktln agqvglalsy aitlmgtfqw gvrqsaeven lmisvervme
     1021 ytelekeapw etnkhpppew psqgmiafen vnftysldgp lvlrhlsvli kpkekeagsa
     1081 lynhcpglic nmlfhsipnl fhsssgpf
//
LOCUS       XP_053943746             367 aa            linear   VRT 09-MAR-2023
DEFINITION  spermine synthase [Cuculus canorus].
ACCESSION   XP_053943746
VERSION     XP_053943746.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087771.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..367
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..367
                     /product="spermine synthase"
                     /calculated_mol_wt=41585
     Region          21..117
                     /region_name="SpmSyn_N"
                     /note="S-adenosylmethionine decarboxylase N -terminal;
                     pfam17950"
                     /db_xref="CDD:465581"
     Region          123..172
                     /region_name="Spermine_synt_N"
                     /note="Spermidine synthase tetramerization domain;
                     pfam17284"
                     /db_xref="CDD:407397"
     Region          175..363
                     /region_name="Spermine_synth"
                     /note="Spermine/spermidine synthase domain; pfam01564"
                     /db_xref="CDD:396237"
     CDS             1..367
                     /gene="SMS"
                     /coded_by="XM_054087771.1:111..1214"
                     /db_xref="GeneID:104063378"
ORIGIN      
        1 maaarhstld fllgatadcn avlkglqpvf qeqgmtetvh nwedhgylat yvkkngsfan
       61 lrihphglvl vdlqsyndha kgreevdqll nkveermkel fcgnikrvkr lpailrggvi
      121 drywptadgr lveydidevv ydedspfqni kilhskqfgn ililsgdvnl aesdlaytqa
      181 imgsgkedyt gkevlilggg dggilyeivk lkpkmvtmve idqmvidgcr kymrktcgdv
      241 ldnlkgecyq vliedcipvl kryakegrmf dyvindltav pistspeeds tweflrlild
      301 lsmkvlkqdg kyftqgncin ltdaltlyee qlsrlycpve fsketvcvps ymelwvfyti
      361 wkkqtgn
//
LOCUS       XP_009555299             439 aa            linear   VRT 09-MAR-2023
DEFINITION  homogentisate 1,2-dioxygenase [Cuculus canorus].
ACCESSION   XP_009555299
VERSION     XP_009555299.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557004.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..439
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..439
                     /product="homogentisate 1,2-dioxygenase"
                     /calculated_mol_wt=49392
     Region          4..434
                     /region_name="hmgA"
                     /note="homogentisate 1,2-dioxygenase; TIGR01015"
                     /db_xref="CDD:273395"
     CDS             1..439
                     /gene="HGD"
                     /coded_by="XM_009557004.2:145..1464"
                     /db_xref="GeneID:104055819"
ORIGIN      
        1 mtglqymsgf gnehvsedpr cpgalpegqn npqvcpygly aeqlsgsaft cprptnkrsw
       61 lyrilpsvch kpfkpfnegh lthnwdevep dpnqlrwkpf eipkapqnkl dfvsglhtlc
      121 gageprgrng iavhiflcni smldrclyns dgdflivpqq gkllittefg kmlvepneic
      181 viqqgmrfsv evfgetrgyi levygahfel pdlgpigang lanprdflvp vawyedrevp
      241 ggytviskyq gklfgaqqdf spfnvvawhg nytpykyhle kfmvinsvaf dhadpsiftv
      301 ltakstrpgv aladfvifpp rwgvanntfr ppyyhrncms efmglikghy eakeegfqpg
      361 gaslhsmmtp hgpdadcfek askakleper vaegtmafmf esslsmavtk wglqtsnrld
      421 knyykcwepl kthfnpkrk
//
LOCUS       XP_009564539             350 aa            linear   VRT 09-MAR-2023
DEFINITION  stimulated by retinoic acid gene 8 protein homolog [Cuculus
            canorus].
ACCESSION   XP_009564539
VERSION     XP_009564539.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566244.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..350
                     /product="stimulated by retinoic acid gene 8 protein
                     homolog"
                     /calculated_mol_wt=39626
     CDS             1..350
                     /gene="STRA8"
                     /coded_by="XM_009566244.2:1..1053"
                     /db_xref="GeneID:104063956"
ORIGIN      
        1 meaaggcskp carvspspla dlreveccvt krqlsrtrhr atlarlfsgl qevvlsqlgk
       61 saskyqvlrk akksiqkleq tlgsllkmke sfsledgnls sleevreeyv kryfrnhsta
      121 sasgavsetd salwysiqec ekqtmekdek pvlilspdts cpdlvefery lyfykhaadl
      181 liehgivcte evplpevsta ifrfwqeqse errdsilqyc sqraflmdpk aasqepacte
      241 gsvrdsrgdn eeasgssvsi qeemmfedaf ditagfldrr etqgvsgqss afasctsdnp
      301 eenhrhhlqi tnflkslffa nmlfcqeedl qfdyetemlr ctetfddedf
//
LOCUS       XP_053943770            2494 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein
            26-like [Cuculus canorus].
ACCESSION   XP_053943770
VERSION     XP_053943770.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087795.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2494
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2494
                     /product="LOW QUALITY PROTEIN: ankyrin repeat
                     domain-containing protein 26-like"
                     /calculated_mol_wt=281316
     Region          <5..208
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          234..454
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          271..333
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(335,337,341..342,345..347,349..350,354,357,366,368,
                     370,374..375,378..380,382..383,387,390,399,401,403,
                     407..408,411..413,415..416,420,423,432)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          335..366
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          368..399
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          401..432
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          <1552..2223
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          1739..2042
                     /region_name="CCDC144C"
                     /note="CCDC144C protein coiled-coil region; pfam14915"
                     /db_xref="CDD:464371"
     Region          <2170..>2288
                     /region_name="PRK00409"
                     /note="recombination and DNA strand exchange inhibitor
                     protein; Reviewed"
                     /db_xref="CDD:234750"
     Region          2291..2404
                     /region_name="DUF3496"
                     /note="Domain of unknown function (DUF3496); pfam12001"
                     /db_xref="CDD:463425"
     CDS             1..2494
                     /gene="LOC128854435"
                     /coded_by="XM_054087795.1:429..7913"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /db_xref="GeneID:128854435"
ORIGIN      
        1 meitpsprrg flkpkaralc agvvgvrtpg qprscpprag ptprslprpr vhgasgaagr
       61 gktepapsrr acagradpge ppghsasapa dpavshgcgq qlhggasapl passaaqppl
      121 pnssafasal pafaslplpl qavasphvva sprssppppl pprrsripsl pprrsqsrsr
      181 vapatpshpp rshllgsqap gsqpqrrrmk rifgfgkkkd ppppcsspgg ayelrqkdlg
      241 klhraaaagd laqvakalkk ssidardkae rtalhlacas ghvdvirylv enkcelnlld
      301 sdnrsplmka vqcqqekcva ivlkcgadpn ladadgntal hlavlspnas vaglllkhna
      361 nidaqnkegn tplllavseh hedivkfllk kgadvhvrdq hertalmiaa yggdlnlvkv
      421 llqygadvsh kdsngwtaed yavihgfssi sqelagwedt geasggslqn ttvagtpslt
      481 gatsftlgap avdrgaiddl serdsirsce kegsddtwqt seeeeldfvl kkqqklnlkl
      541 lmnssqqprk nsdssrsqsp kspkqslkqr npfkpvnqgq rgellnqdvs nasnmeieel
      601 kkegdendng geeeeeeeee deededltqd ekgeedlede etqsnnilee eqgektepkr
      661 einqklgyfs nakyegeawc gtgdvyddgd dgddddggdd dgddddgndd dkisqeldek
      721 veesvdtpvs fiagcyeglq entssmspkr mnnelscksv pkqavfqnln nlqdtqenwn
      781 rksmmqekfh rnadscfadf kmtdwkkeip qllsetygle kkssfdnsfe mxnnsrsaak
      841 nprfesqrln sdilehvgde dteekqcegv ddkvceilkr esedlflnrh eenlraafhs
      901 sakeeekeeq ekddtgevlq aaivedvkns lcndshqvhn askhnadalp avaveeekek
      961 eegedddfpw dsesqiipsa agglreispg vfvpvidryg vysaiipkeh snggkgstfp
     1021 mspsteqedn enviencevq dkriiettnl ientahenqa dkaeishqea iaengnslna
     1081 dkrlspkpwe eryeriwvan ekrelkanfk nitaelkqlf geinetgktp slveelsehg
     1141 fseelkcsyv vssrvmessn klenkgefgd akltlggkvp kteivipspg vlpdqknlna
     1201 nmddnwstde ednrndtdns kvplpkgeen kmpamameek engssrnvee npeyslrhsl
     1261 kttildvsns lpkikpfyts dekalfiter klgkdsgfnd dvprdflnhs nnvgeteven
     1321 pfanaqqscs rpkgnldeel kqdlerfksk vgmlqiafrt letekaqlqk evgkeksfkt
     1381 eavtkqedvd klitppgnip nkqmkqeltl rnndgseten envveekdkk nfsseekpgl
     1441 ikmstksnfd lntkvaktnk rwtskqkanq qkssssrsqv lddstfsets qdearpaakt
     1501 rskkekvnvw mdvtddlslt hssgtseell tanytkamll leqlsvnped saiffeiqdi
     1561 lleyeqmikr gkkshttlyg eegklqseke esqlmvedaq dmksilaqsd iqsltctlkq
     1621 eeekrlrvem lyektrkdlr rkedqyckav ekkrqlelhs knlemelvtl kkllkqaeee
     1681 rdimqrqlsq eqsartpqee iwknnlgrek dseeetrrti gkdseefete rekyllcknq
     1741 llqdeiamlr leldqvrarh qeeewkylee netlkekned lkkelklnee altqavlqyt
     1801 gqlnilkaes avltskleqa kegrdrleae tesfrsrlgt avqelerhqs sksdlertlq
     1861 rerdewlrsq dklhydlsnv retnktlseq ltkaesksns lenelhqlkq tlsektllle
     1921 mtqkkltqaq cqakesdhar qlekdqvskf qikqesmqer laqlqsenll lrqqledmhn
     1981 egiskekavn dvqdwfndlf dklradtekq vhlveernke lnmrcsdlre evrkhesdke
     2041 eregvirqlq qeladalkkq smseaslevf tcirseleed kvnlqkelek lktkcesegk
     2101 kakklvelkh pvevhleqev erntelqkdc krlkqllsrs vkklrmheqr efnlqeemks
     2161 kysdmvndad rlrtkvgels qqlereskrc mqleaqnqhl qeelstmrks heklekskhq
     2221 lkeevanlky hletkmvdhs qiekykkeve eqarqeiihk lkqvniflqt qavcqdrveq
     2281 irashhaslt nqlkqrirdl ecewdrlkkt qqdnilikes tateverykq lyleeeknrr
     2341 nlanklertk erleeakaml leerqrnrsl ivngmvgggl aaspvlhste lghlgnslgl
     2401 nrslnlggsf lnsignalsp kskveafvak vrqeldekit keleqattgl etesaristv
     2461 vpssgsskns vgdqdpvsra gqeyqdvltk nyll
//
LOCUS       XP_009564940              96 aa            linear   VRT 09-MAR-2023
DEFINITION  LSM8 homolog, U6 small nuclear RNA associated [Cuculus canorus].
ACCESSION   XP_009564940
VERSION     XP_009564940.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566645.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..96
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..96
                     /product="LSM8 homolog, U6 small nuclear RNA associated"
                     /calculated_mol_wt=10300
     Region          3..92
                     /region_name="LSm8"
                     /note="Like-Sm protein 8; cd01727"
                     /db_xref="CDD:212474"
     Site            order(5,8..9,14,16..18,21,23,28..31,34..35,37,59..71)
                     /site_type="other"
                     /note="putative oligomer interface [polypeptide binding]"
                     /db_xref="CDD:212474"
     Site            order(13..19,21..33,35..39)
                     /site_type="other"
                     /note="Sm1 motif"
                     /db_xref="CDD:212474"
     Site            order(31,33,63)
                     /site_type="other"
                     /note="putative RNA binding site [nucleotide binding]"
                     /db_xref="CDD:212474"
     Site            59..70
                     /site_type="other"
                     /note="Sm2 motif"
                     /db_xref="CDD:212474"
     CDS             1..96
                     /gene="LSM8"
                     /coded_by="XM_009566645.2:82..372"
                     /db_xref="GeneID:104064320"
ORIGIN      
        1 mtsalenyin rtvavitsdg rmivgtlkgf dqtinlilde shervfsssq gveqvvlgly
       61 ivrgdnvavi geideetdsa ldlgniraep lnsvvh
//
LOCUS       XP_009555301            1190 aa            linear   VRT 09-MAR-2023
DEFINITION  syntaxin-binding protein 5-like isoform X1 [Cuculus canorus].
ACCESSION   XP_009555301
VERSION     XP_009555301.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557006.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555301.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1190
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1190
                     /product="syntaxin-binding protein 5-like isoform X1"
                     /calculated_mol_wt=130741
     Region          43..>304
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          78..111
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          119..157
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          162..208
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          216..252
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          257..292
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          292..401
                     /region_name="LLGL"
                     /note="LLGL2; pfam08366"
                     /db_xref="CDD:462446"
     Region          1124..1183
                     /region_name="R-SNARE_STXBP5"
                     /note="SNARE domain of STXBP5; cd15893"
                     /db_xref="CDD:277246"
     Site            order(1126,1129..1130,1132,1136..1137,1139..1141,
                     1143..1144,1146..1147,1150..1151,1153..1158,1160..1165,
                     1167..1172,1174..1176,1178..1179,1182)
                     /site_type="other"
                     /note="heterotetramer interface [polypeptide binding]"
                     /db_xref="CDD:277246"
     Site            1150
                     /site_type="other"
                     /note="zero layer"
                     /db_xref="CDD:277246"
     CDS             1..1190
                     /gene="STXBP5L"
                     /coded_by="XM_009557006.2:1120..4692"
                     /db_xref="GeneID:104055821"
ORIGIN      
        1 mkkfnfrkvl dgltasspgg sssssgsggg sgaggssahp ggtagaagtp reevqetlts
       61 dyfqicktvr hgfpylptal afdpvqkila igtrtgairi lgrpgvdcyc qhesgaavlq
      121 lqflinegal vsasaddalh lwnlrqkrpa ilhslkfnre ritychlpfq skwlyvgter
      181 gnthivnies filsgyvimw nkaielstkt hpgpvvhlsd sprdegklli gyengtvvfw
      241 dlrskradlr ayydeaihsv awhhegkqfm cshsdgsltl wnlkspnrpf qttiphgkiq
      301 rdgkktesck pilkveyktc knsepfvifs gglsydkacr rpsltimhgk aitvlemdhp
      361 ivdfltlcet pypnefqepy avvvllekdl ivvdltqsnf pifenpypid ihespvtcte
      421 yfadcppdli pvlysvgakh kkqgcsnkew pisggawnlg aqtypeiiit ghadgsvkfw
      481 dasaitlqml yklktskvfe kqkpgegkat aeiveedpfa vqmmywcpes rifcvagvsa
      541 yvivyrfskh evnteiasle vrlqyevedi itpepeiipp fpdassqlps lkslsgstnt
      601 vacegtmkds ipclsvktrp vrmppgyqad lviqlvwvdg eppqqitsla vnsayglvaf
      661 gncnglavvd fmqktvllsm gtldlygssd pyqrqprspr kskqfaadnf cmrglsnfyp
      721 dltkrirtsy qsltelsdsp vslelercks ptsdhvnghc tsptsqscss gkrlssadvs
      781 kanrrgpgrp pfrkaqsaac meislpvtte enrensfsrs rsssvssidk dskeaitaly
      841 fmesfarknd savspclwvg tglgmvlils lnlpasddlr qsepvmvsps gtvltlkgav
      901 ltfacldcmg tlthppyevw rdphsaddge ktrkrklvmh spsssqdmgd hqfavicsek
      961 qakvfslpsq sclyvhnite tsfllradvv tlcnsvclac fcanghimtl slpslrplld
     1021 mnylpvtdmr iartfcfsne gqalylsspt eiqrltysqe mcdnlqdmlg dlftpvetpe
     1081 aqnrgflkgl fggsgqafdr eelfgeatag kasrslaqhi pgsggiegvr gaaggvigdl
     1141 trarialder gqklgeldek tasmmasaea fskhahevml kykdkkwyqf
//
LOCUS       XP_053943804            1185 aa            linear   VRT 09-MAR-2023
DEFINITION  syntaxin-binding protein 5-like isoform X2 [Cuculus canorus].
ACCESSION   XP_053943804
VERSION     XP_053943804.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087829.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1185
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1185
                     /product="syntaxin-binding protein 5-like isoform X2"
                     /calculated_mol_wt=130247
     Region          43..>304
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          78..111
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          119..157
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          162..208
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          216..252
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          257..292
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          292..401
                     /region_name="LLGL"
                     /note="LLGL2; pfam08366"
                     /db_xref="CDD:462446"
     Region          1119..1178
                     /region_name="R-SNARE_STXBP5"
                     /note="SNARE domain of STXBP5; cd15893"
                     /db_xref="CDD:277246"
     Site            order(1121,1124..1125,1127,1131..1132,1134..1136,
                     1138..1139,1141..1142,1145..1146,1148..1153,1155..1160,
                     1162..1167,1169..1171,1173..1174,1177)
                     /site_type="other"
                     /note="heterotetramer interface [polypeptide binding]"
                     /db_xref="CDD:277246"
     Site            1145
                     /site_type="other"
                     /note="zero layer"
                     /db_xref="CDD:277246"
     CDS             1..1185
                     /gene="STXBP5L"
                     /coded_by="XM_054087829.1:1120..4677"
                     /db_xref="GeneID:104055821"
ORIGIN      
        1 mkkfnfrkvl dgltasspgg sssssgsggg sgaggssahp ggtagaagtp reevqetlts
       61 dyfqicktvr hgfpylptal afdpvqkila igtrtgairi lgrpgvdcyc qhesgaavlq
      121 lqflinegal vsasaddalh lwnlrqkrpa ilhslkfnre ritychlpfq skwlyvgter
      181 gnthivnies filsgyvimw nkaielstkt hpgpvvhlsd sprdegklli gyengtvvfw
      241 dlrskradlr ayydeaihsv awhhegkqfm cshsdgsltl wnlkspnrpf qttiphgkiq
      301 rdgkktesck pilkveyktc knsepfvifs gglsydkacr rpsltimhgk aitvlemdhp
      361 ivdfltlcet pypnefqepy avvvllekdl ivvdltqsnf pifenpypid ihespvtcte
      421 yfadcppdli pvlysvgakh kkqgcsnkew pisggawnlg aqtypeiiit ghadgsvkfw
      481 dasaitlqml yklktskvfe kqkpgegkat aeiveedpfa vqmmywcpes rifcvagvsa
      541 yvivyrfskh evnteiasle vrlqyevedi itpepeiipp fpdassqlps lkslsgstnt
      601 vacegtmkds ipclsvktrp vrmppgyqad lviqlvwvdg eppqqitsla vnsayglvaf
      661 gncnglavvd fmqktvllsm gtldlygssd pyqrqprspr kskqfaadnf cmrglsnfyp
      721 dltkrirtsy qikgsrklsl ptdlktdldh vnghctspts qscssgkrls sadvskanrr
      781 gpgrppfrka qsaacmeisl pvtteenren sfsrsrsssv ssidkdskea italyfmesf
      841 arkndsavsp clwvgtglgm vlilslnlpa sddlrqsepv mvspsgtvlt lkgavltfac
      901 ldcmgtlthp pyevwrdphs addgektrkr klvmhspsss qdmgdhqfav icsekqakvf
      961 slpsqsclyv hnitetsfll radvvtlcns vclacfcang himtlslpsl rplldmnylp
     1021 vtdmriartf cfsnegqaly lsspteiqrl tysqemcdnl qdmlgdlftp vetpeaqnrg
     1081 flkglfggsg qafdreelfg eatagkasrs laqhipgsgg iegvrgaagg vigdltrari
     1141 aldergqklg eldektasmm asaeafskha hevmlkykdk kwyqf
//
LOCUS       XP_053943813            1168 aa            linear   VRT 09-MAR-2023
DEFINITION  syntaxin-binding protein 5-like isoform X3 [Cuculus canorus].
ACCESSION   XP_053943813
VERSION     XP_053943813.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087838.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1168
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1168
                     /product="syntaxin-binding protein 5-like isoform X3"
                     /calculated_mol_wt=128379
     Region          43..>304
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          78..111
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          119..157
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          162..208
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          216..252
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          257..292
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          292..401
                     /region_name="LLGL"
                     /note="LLGL2; pfam08366"
                     /db_xref="CDD:462446"
     Region          1102..1161
                     /region_name="R-SNARE_STXBP5"
                     /note="SNARE domain of STXBP5; cd15893"
                     /db_xref="CDD:277246"
     Site            order(1104,1107..1108,1110,1114..1115,1117..1119,
                     1121..1122,1124..1125,1128..1129,1131..1136,1138..1143,
                     1145..1150,1152..1154,1156..1157,1160)
                     /site_type="other"
                     /note="heterotetramer interface [polypeptide binding]"
                     /db_xref="CDD:277246"
     Site            1128
                     /site_type="other"
                     /note="zero layer"
                     /db_xref="CDD:277246"
     CDS             1..1168
                     /gene="STXBP5L"
                     /coded_by="XM_054087838.1:1120..4626"
                     /db_xref="GeneID:104055821"
ORIGIN      
        1 mkkfnfrkvl dgltasspgg sssssgsggg sgaggssahp ggtagaagtp reevqetlts
       61 dyfqicktvr hgfpylptal afdpvqkila igtrtgairi lgrpgvdcyc qhesgaavlq
      121 lqflinegal vsasaddalh lwnlrqkrpa ilhslkfnre ritychlpfq skwlyvgter
      181 gnthivnies filsgyvimw nkaielstkt hpgpvvhlsd sprdegklli gyengtvvfw
      241 dlrskradlr ayydeaihsv awhhegkqfm cshsdgsltl wnlkspnrpf qttiphgkiq
      301 rdgkktesck pilkveyktc knsepfvifs gglsydkacr rpsltimhgk aitvlemdhp
      361 ivdfltlcet pypnefqepy avvvllekdl ivvdltqsnf pifenpypid ihespvtcte
      421 yfadcppdli pvlysvgakh kkqgcsnkew pisggawnlg aqtypeiiit ghadgsvkfw
      481 dasaitlqml yklktskvfe kqkpgegkat aeiveedpfa vqmmywcpes rifcvagvsa
      541 yvivyrfskh evnteiasle vrlqyevedi itpepeiipp fpdassqlps lkslsgstnt
      601 vacegtmkds ipclsvktrp vrmppgyqad lviqlvwvdg eppqqitsla vnsayglvaf
      661 gncnglavvd fmqktvllsm gtldlygssd pyqrqprspr kskqfaadnf cmrglsnfyp
      721 dltkrirtsy qnhvnghcts ptsqscssgk rlssadvska nrrgpgrppf rkaqsaacme
      781 islpvtteen rensfsrsrs ssvssidkds keaitalyfm esfarkndsa vspclwvgtg
      841 lgmvlilsln lpasddlrqs epvmvspsgt vltlkgavlt facldcmgtl thppyevwrd
      901 phsaddgekt rkrklvmhsp sssqdmgdhq favicsekqa kvfslpsqsc lyvhnitets
      961 fllradvvtl cnsvclacfc anghimtlsl pslrplldmn ylpvtdmria rtfcfsnegq
     1021 alylssptei qrltysqemc dnlqdmlgdl ftpvetpeaq nrgflkglfg gsgqafdree
     1081 lfgeatagka srslaqhipg sggiegvrga aggvigdltr arialdergq klgeldekta
     1141 smmasaeafs khahevmlky kdkkwyqf
//
LOCUS       XP_053943820            1166 aa            linear   VRT 09-MAR-2023
DEFINITION  syntaxin-binding protein 5-like isoform X4 [Cuculus canorus].
ACCESSION   XP_053943820
VERSION     XP_053943820.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087845.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1166
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1166
                     /product="syntaxin-binding protein 5-like isoform X4"
                     /calculated_mol_wt=127802
     Region          43..>304
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          78..111
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          119..157
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          162..208
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          216..252
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          257..292
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          292..401
                     /region_name="LLGL"
                     /note="LLGL2; pfam08366"
                     /db_xref="CDD:462446"
     Region          1100..1159
                     /region_name="R-SNARE_STXBP5"
                     /note="SNARE domain of STXBP5; cd15893"
                     /db_xref="CDD:277246"
     Site            order(1102,1105..1106,1108,1112..1113,1115..1117,
                     1119..1120,1122..1123,1126..1127,1129..1134,1136..1141,
                     1143..1148,1150..1152,1154..1155,1158)
                     /site_type="other"
                     /note="heterotetramer interface [polypeptide binding]"
                     /db_xref="CDD:277246"
     Site            1126
                     /site_type="other"
                     /note="zero layer"
                     /db_xref="CDD:277246"
     CDS             1..1166
                     /gene="STXBP5L"
                     /coded_by="XM_054087845.1:1120..4620"
                     /db_xref="GeneID:104055821"
ORIGIN      
        1 mkkfnfrkvl dgltasspgg sssssgsggg sgaggssahp ggtagaagtp reevqetlts
       61 dyfqicktvr hgfpylptal afdpvqkila igtrtgairi lgrpgvdcyc qhesgaavlq
      121 lqflinegal vsasaddalh lwnlrqkrpa ilhslkfnre ritychlpfq skwlyvgter
      181 gnthivnies filsgyvimw nkaielstkt hpgpvvhlsd sprdegklli gyengtvvfw
      241 dlrskradlr ayydeaihsv awhhegkqfm cshsdgsltl wnlkspnrpf qttiphgkiq
      301 rdgkktesck pilkveyktc knsepfvifs gglsydkacr rpsltimhgk aitvlemdhp
      361 ivdfltlcet pypnefqepy avvvllekdl ivvdltqsnf pifenpypid ihespvtcte
      421 yfadcppdli pvlysvgakh kkqgcsnkew pisggawnlg aqtypeiiit ghadgsvkfw
      481 dasaitlqml yklktskvfe kqkpgegkat aeiveedpfa vqmmywcpes rifcvagvsa
      541 yvivyrfskh evnteiasle vrlqyevedi itpepeiipp fpdassqlps lkslsgstnt
      601 vacegtmkds ipclsvktrp vrmppgyqad lviqlvwvdg eppqqitsla vnsayglvaf
      661 gncnglavvd fmqktvllsm gtldlygssd pyqrqprspr kskqfaaglt elsdspvsle
      721 lercksptsd hvnghctspt sqscssgkrl ssadvskanr rgpgrppfrk aqsaacmeis
      781 lpvtteenre nsfsrsrsss vssidkdske aitalyfmes farkndsavs pclwvgtglg
      841 mvlilslnlp asddlrqsep vmvspsgtvl tlkgavltfa cldcmgtlth ppyevwrdph
      901 saddgektrk rklvmhspss sqdmgdhqfa vicsekqakv fslpsqscly vhnitetsfl
      961 lradvvtlcn svclacfcan ghimtlslps lrplldmnyl pvtdmriart fcfsnegqal
     1021 ylsspteiqr ltysqemcdn lqdmlgdlft pvetpeaqnr gflkglfggs gqafdreelf
     1081 geatagkasr slaqhipgsg giegvrgaag gvigdltrar ialdergqkl geldektasm
     1141 masaeafskh ahevmlkykd kkwyqf
//
LOCUS       XP_009555298             315 aa            linear   VRT 09-MAR-2023
DEFINITION  follistatin-related protein 1 [Cuculus canorus].
ACCESSION   XP_009555298
VERSION     XP_009555298.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557003.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..315
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..315
                     /product="follistatin-related protein 1"
                     /calculated_mol_wt=35852
     Region          31..53
                     /region_name="FOLN"
                     /note="Follistatin-N-terminal domain-like; smart00274"
                     /db_xref="CDD:128570"
     Region          58..98
                     /region_name="KAZAL_FS"
                     /note="Kazal type serine protease inhibitors and
                     follistatin-like domains. Kazal inhibitors inhibit serine
                     proteases, such as, trypsin, chyomotrypsin, avian
                     ovomucoids, and elastases. The inhibitory domain has one
                     reactive site peptide bond, which serves the...; cd00104"
                     /db_xref="CDD:238052"
     Region          113..226
                     /region_name="EFh_SPARC_FSTL1"
                     /note="EF-hand, extracellular calcium-binding (EC) motif,
                     found in follistatin-related protein 1 (FRP-1); cd16233"
                     /db_xref="CDD:320012"
     Region          145..176
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:320012"
     Site            order(157,160,167,206,208,210,217)
                     /site_type="other"
                     /note="putative Ca binding site [ion binding]"
                     /db_xref="CDD:320012"
     Region          194..226
                     /region_name="EF-hand motif"
                     /note="EF-hand motif [structural motif]"
                     /db_xref="CDD:320012"
     Region          233..>271
                     /region_name="VWC"
                     /note="von Willebrand factor type C domain; cl17735"
                     /db_xref="CDD:450195"
     CDS             1..315
                     /gene="FSTL1"
                     /coded_by="XM_009557003.2:97..1044"
                     /db_xref="GeneID:104055818"
ORIGIN      
        1 miwktlpllc allavarlra eeeprskski canvfcgagr ecavtekrep tclciekckp
       61 hkrpvcgsng ktylnhcelh rdacltgski qvdydghcke kksespaasp vvcyqsdrde
      121 lrrrviqwle aeiipdgwfs kgsnysevld kyfksfddgd srldsteflk fveqnetavn
      181 ittymdqetn kllrglcvda lielsdenad wklsfneflk clspsfnppe krcaledety
      241 edgaetqvec nrcvcacgnw vctamtcegk nenvpahrqr pnqdlteeel aryvqelqkh
      301 qetsektkrm stkem
//
LOCUS       XP_053943856             259 aa            linear   VRT 09-MAR-2023
DEFINITION  bisphosphoglycerate mutase [Cuculus canorus].
ACCESSION   XP_053943856
VERSION     XP_053943856.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087881.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..259
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..259
                     /product="bisphosphoglycerate mutase"
                     /calculated_mol_wt=29465
     Region          4..237
                     /region_name="GpmA"
                     /note="Phosphoglycerate mutase (BPG-dependent)
                     [Carbohydrate transport and metabolism]; COG0588"
                     /db_xref="CDD:440353"
     CDS             1..259
                     /gene="BPGM"
                     /coded_by="XM_054087881.1:263..1042"
                     /db_xref="GeneID:104064597"
ORIGIN      
        1 makyrlvllr hgegawnken rfcswvdqkl ssdgikeaqn cgkhlkalgf efdlvftsvl
       61 srsiqtawli lqemgqewvp iqsswrlner hygaliglnr aemalnhgee qvkiwrrsyd
      121 vtpppitesh pyyeeiyndr rykcsdvsqd nlpkaeslkd vldrllpywn ekivpelksg
      181 kmilisahgn ssrallkhve gisdediinv tlptgvpill eldenlhplg phqflgdqea
      241 iqaaikkved qgkvksaek
//
LOCUS       XP_053943862             259 aa            linear   VRT 09-MAR-2023
DEFINITION  bisphosphoglycerate mutase [Cuculus canorus].
ACCESSION   XP_053943862
VERSION     XP_053943862.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087887.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..259
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..259
                     /product="bisphosphoglycerate mutase"
                     /calculated_mol_wt=29465
     Region          4..237
                     /region_name="GpmA"
                     /note="Phosphoglycerate mutase (BPG-dependent)
                     [Carbohydrate transport and metabolism]; COG0588"
                     /db_xref="CDD:440353"
     CDS             1..259
                     /gene="BPGM"
                     /coded_by="XM_054087887.1:629..1408"
                     /db_xref="GeneID:104064597"
ORIGIN      
        1 makyrlvllr hgegawnken rfcswvdqkl ssdgikeaqn cgkhlkalgf efdlvftsvl
       61 srsiqtawli lqemgqewvp iqsswrlner hygaliglnr aemalnhgee qvkiwrrsyd
      121 vtpppitesh pyyeeiyndr rykcsdvsqd nlpkaeslkd vldrllpywn ekivpelksg
      181 kmilisahgn ssrallkhve gisdediinv tlptgvpill eldenlhplg phqflgdqea
      241 iqaaikkved qgkvksaek
//
LOCUS       XP_053943870             259 aa            linear   VRT 09-MAR-2023
DEFINITION  bisphosphoglycerate mutase [Cuculus canorus].
ACCESSION   XP_053943870
VERSION     XP_053943870.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087895.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..259
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..259
                     /product="bisphosphoglycerate mutase"
                     /calculated_mol_wt=29465
     Region          4..237
                     /region_name="GpmA"
                     /note="Phosphoglycerate mutase (BPG-dependent)
                     [Carbohydrate transport and metabolism]; COG0588"
                     /db_xref="CDD:440353"
     CDS             1..259
                     /gene="BPGM"
                     /coded_by="XM_054087895.1:167..946"
                     /db_xref="GeneID:104064597"
ORIGIN      
        1 makyrlvllr hgegawnken rfcswvdqkl ssdgikeaqn cgkhlkalgf efdlvftsvl
       61 srsiqtawli lqemgqewvp iqsswrlner hygaliglnr aemalnhgee qvkiwrrsyd
      121 vtpppitesh pyyeeiyndr rykcsdvsqd nlpkaeslkd vldrllpywn ekivpelksg
      181 kmilisahgn ssrallkhve gisdediinv tlptgvpill eldenlhplg phqflgdqea
      241 iqaaikkved qgkvksaek
//
LOCUS       XP_053943884            1150 aa            linear   VRT 09-MAR-2023
DEFINITION  caprin-2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053943884
VERSION     XP_053943884.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087909.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1150
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1150
                     /product="caprin-2 isoform X1"
                     /calculated_mol_wt=129104
     Region          117..232
                     /region_name="Caprin-1_dimer"
                     /note="Caprin-1 dimerization domain; pfam18293"
                     /db_xref="CDD:436391"
     Region          <244..585
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          593..958
                     /region_name="Caprin-1_C"
                     /note="Cytoplasmic activation/proliferation-associated
                     protein-1 C term; pfam12287"
                     /db_xref="CDD:463522"
     Region          1022..1147
                     /region_name="C1q"
                     /note="C1q domain; pfam00386"
                     /db_xref="CDD:395310"
     CDS             1..1150
                     /gene="CAPRIN2"
                     /coded_by="XM_054087909.1:84..3536"
                     /db_xref="GeneID:104056353"
ORIGIN      
        1 mkaakqqvnp sgenqppssp lqsalnsaas psqayetyid ngliclkhki rniekkklkl
       61 edykdrlkkg ealnqdqlea vekydevvhn lefakelqkt fsglsqdllk aqrkaqrres
      121 llkleaekkk lrtilqvqyv lqnftlehvq kdfkggvnga iylpskeldy lirfakltcp
      181 erneslsved qmeqsslyfw dllegsekpv vgttykhmkd llsklldsgy fesiptprsp
      241 vpvkeleevk rserarqmsk gepvkepesi melmkseiqp qeflnrcyla eaeysvkkrp
      301 eepksweaec trkqeppksw emlvdieeqq qkrkqealkp wearvrqqep kradspkpwe
      361 arvkeeeqkr esakpwetpa eeeeqkkqea pkawvphvqe eqespkpwaa kareeqgqkk
      421 qelskpwvak vreeqeqkkq espkpwvtki keepeqkres pkpwvtqtre qpeqkkpepm
      481 kswempvree peqkkqepvk awaahvreep eqkkqetqea wekadrqhqv ssqqlqnppk
      541 swgaasvgpk eqmgpkkfdi epkevpkpvh qpaaefcsts tlpkdpvlrr eklqdlmtqi
      601 qgtynfmqes ildfdkasps avgssqppsv tpasspvask eqklpsqsdf lqqplqaaaa
      661 ssvtlhgsnt slasadqtls vseaedlvtt qtpqasasls qetekytsqp lyqsssrise
      721 plipkkieia qatiplqsep qsplptssts mspvppaqsf qsppassssv tikaapfqam
      781 qtvfkvnapl pprkdqeike dssytagynq sfstastqtt pqcqlqsshi aeqtslsqes
      841 lssavnyqpd gavpvsngsl afypaqtnvi prppqpyins rgsvrgsarg grslansyrs
      901 pggykgfday rgspsitngn ygqlqfpgrd yagmpysqrd vnyqqcykrg gitsgprans
      961 ragwsdssqv ssperdnetf nsgdsgqgds rsitpvdmpv tsqaatilpv hvyplpqqmr
     1021 vafsaartsn lapgtldqpi vfdlllnnlg etfdiqlgrf ncpvngtyvf ifhmlklavn
     1081 vplyvnlmkn eevlvsayan dgapdhetas nhavlqlfqg dqiwlrlhrg aiygsswkys
     1141 tfsgyllyqd
//
LOCUS       XP_053943893            1149 aa            linear   VRT 09-MAR-2023
DEFINITION  caprin-2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053943893
VERSION     XP_053943893.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087918.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1149
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1149
                     /product="caprin-2 isoform X2"
                     /calculated_mol_wt=129033
     Region          117..232
                     /region_name="Caprin-1_dimer"
                     /note="Caprin-1 dimerization domain; pfam18293"
                     /db_xref="CDD:436391"
     Region          <244..585
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          593..958
                     /region_name="Caprin-1_C"
                     /note="Cytoplasmic activation/proliferation-associated
                     protein-1 C term; pfam12287"
                     /db_xref="CDD:463522"
     Region          1021..1146
                     /region_name="C1q"
                     /note="C1q domain; pfam00386"
                     /db_xref="CDD:395310"
     CDS             1..1149
                     /gene="CAPRIN2"
                     /coded_by="XM_054087918.1:85..3534"
                     /db_xref="GeneID:104056353"
ORIGIN      
        1 mkaakqqvnp sgenqppssp lqsalnsaas psqayetyid ngliclkhki rniekkklkl
       61 edykdrlkkg ealnqdqlea vekydevvhn lefakelqkt fsglsqdllk aqrkaqrres
      121 llkleaekkk lrtilqvqyv lqnftlehvq kdfkggvnga iylpskeldy lirfakltcp
      181 erneslsved qmeqsslyfw dllegsekpv vgttykhmkd llsklldsgy fesiptprsp
      241 vpvkeleevk rserarqmsk gepvkepesi melmkseiqp qeflnrcyla eaeysvkkrp
      301 eepksweaec trkqeppksw emlvdieeqq qkrkqealkp wearvrqqep kradspkpwe
      361 arvkeeeqkr esakpwetpa eeeeqkkqea pkawvphvqe eqespkpwaa kareeqgqkk
      421 qelskpwvak vreeqeqkkq espkpwvtki keepeqkres pkpwvtqtre qpeqkkpepm
      481 kswempvree peqkkqepvk awaahvreep eqkkqetqea wekadrqhqv ssqqlqnppk
      541 swgaasvgpk eqmgpkkfdi epkevpkpvh qpaaefcsts tlpkdpvlrr eklqdlmtqi
      601 qgtynfmqes ildfdkasps avgssqppsv tpasspvask eqklpsqsdf lqqplqaaaa
      661 ssvtlhgsnt slasadqtls vseaedlvtt qtpqasasls qetekytsqp lyqsssrise
      721 plipkkieia qatiplqsep qsplptssts mspvppaqsf qsppassssv tikaapfqam
      781 qtvfkvnapl pprkdqeike dssytagynq sfstastqtt pqcqlqsshi aeqtslsqes
      841 lssavnyqpd gavpvsngsl afypaqtnvi prppqpyins rgsvrgsarg grslansyrs
      901 pggykgfday rgspsitngn ygqlqfpgrd yagmpysqrd vnyqqcykrg gitsgprans
      961 rgwsdssqvs sperdnetfn sgdsgqgdsr sitpvdmpvt sqaatilpvh vyplpqqmrv
     1021 afsaartsnl apgtldqpiv fdlllnnlge tfdiqlgrfn cpvngtyvfi fhmlklavnv
     1081 plyvnlmkne evlvsayand gapdhetasn havlqlfqgd qiwlrlhrga iygsswkyst
     1141 fsgyllyqd
//
LOCUS       XP_053943903            1175 aa            linear   VRT 09-MAR-2023
DEFINITION  caprin-2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053943903
VERSION     XP_053943903.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087928.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1175
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1175
                     /product="caprin-2 isoform X3"
                     /calculated_mol_wt=131852
     Region          142..257
                     /region_name="Caprin-1_dimer"
                     /note="Caprin-1 dimerization domain; pfam18293"
                     /db_xref="CDD:436391"
     Region          <269..610
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          618..983
                     /region_name="Caprin-1_C"
                     /note="Cytoplasmic activation/proliferation-associated
                     protein-1 C term; pfam12287"
                     /db_xref="CDD:463522"
     Region          1047..1172
                     /region_name="C1q"
                     /note="C1q domain; pfam00386"
                     /db_xref="CDD:395310"
     CDS             1..1175
                     /gene="CAPRIN2"
                     /coded_by="XM_054087928.1:882..4409"
                     /db_xref="GeneID:104056353"
ORIGIN      
        1 mvqlsqapfr rsspsgrsee gedksmkaak qqvnpsgenq ppssplqsal nsaaspsqay
       61 etyidnglic lkhkirniek kklkledykd rlkkgealnq dqleavekyd evvhnlefak
      121 elqktfsgls qdllkaqrka qrresllkle aekkklrtil qvqyvlqnft lehvqkdfkg
      181 gvngaiylps keldylirfa kltcpernes lsvedqmeqs slyfwdlleg sekpvvgtty
      241 khmkdllskl ldsgyfesip tprspvpvke leevkrsera rqmskgepvk epesimelmk
      301 seiqpqefln rcylaeaeys vkkrpeepks weaectrkqe ppkswemlvd ieeqqqkrkq
      361 ealkpwearv rqqepkrads pkpwearvke eeqkresakp wetpaeeeeq kkqeapkawv
      421 phvqeeqesp kpwaakaree qgqkkqelsk pwvakvreeq eqkkqespkp wvtkikeepe
      481 qkrespkpwv tqtreqpeqk kpepmkswem pvreepeqkk qepvkawaah vreepeqkkq
      541 etqeawekad rqhqvssqql qnppkswgaa svgpkeqmgp kkfdiepkev pkpvhqpaae
      601 fcststlpkd pvlrreklqd lmtqiqgtyn fmqesildfd kaspsavgss qppsvtpass
      661 pvaskeqklp sqsdflqqpl qaaaassvtl hgsntslasa dqtlsvseae dlvttqtpqa
      721 saslsqetek ytsqplyqss sriseplipk kieiaqatip lqsepqsplp tsstsmspvp
      781 paqsfqsppa ssssvtikaa pfqamqtvfk vnaplpprkd qeikedssyt agynqsfsta
      841 stqttpqcql qsshiaeqts lsqeslssav nyqpdgavpv sngslafypa qtnviprppq
      901 pyinsrgsvr gsarggrsla nsyrspggyk gfdayrgsps itngnygqlq fpgrdyagmp
      961 ysqrdvnyqq cykrggitsg pransragws dssqvssper dnetfnsgds gqgdsrsitp
     1021 vdmpvtsqaa tilpvhvypl pqqmrvafsa artsnlapgt ldqpivfdll lnnlgetfdi
     1081 qlgrfncpvn gtyvfifhml klavnvplyv nlmkneevlv sayandgapd hetasnhavl
     1141 qlfqgdqiwl rlhrgaiygs swkystfsgy llyqd
//
LOCUS       XP_053943911            1175 aa            linear   VRT 09-MAR-2023
DEFINITION  caprin-2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053943911
VERSION     XP_053943911.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087936.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1175
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1175
                     /product="caprin-2 isoform X3"
                     /calculated_mol_wt=131852
     Region          142..257
                     /region_name="Caprin-1_dimer"
                     /note="Caprin-1 dimerization domain; pfam18293"
                     /db_xref="CDD:436391"
     Region          <269..610
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          618..983
                     /region_name="Caprin-1_C"
                     /note="Cytoplasmic activation/proliferation-associated
                     protein-1 C term; pfam12287"
                     /db_xref="CDD:463522"
     Region          1047..1172
                     /region_name="C1q"
                     /note="C1q domain; pfam00386"
                     /db_xref="CDD:395310"
     CDS             1..1175
                     /gene="CAPRIN2"
                     /coded_by="XM_054087936.1:137..3664"
                     /db_xref="GeneID:104056353"
ORIGIN      
        1 mvqlsqapfr rsspsgrsee gedksmkaak qqvnpsgenq ppssplqsal nsaaspsqay
       61 etyidnglic lkhkirniek kklkledykd rlkkgealnq dqleavekyd evvhnlefak
      121 elqktfsgls qdllkaqrka qrresllkle aekkklrtil qvqyvlqnft lehvqkdfkg
      181 gvngaiylps keldylirfa kltcpernes lsvedqmeqs slyfwdlleg sekpvvgtty
      241 khmkdllskl ldsgyfesip tprspvpvke leevkrsera rqmskgepvk epesimelmk
      301 seiqpqefln rcylaeaeys vkkrpeepks weaectrkqe ppkswemlvd ieeqqqkrkq
      361 ealkpwearv rqqepkrads pkpwearvke eeqkresakp wetpaeeeeq kkqeapkawv
      421 phvqeeqesp kpwaakaree qgqkkqelsk pwvakvreeq eqkkqespkp wvtkikeepe
      481 qkrespkpwv tqtreqpeqk kpepmkswem pvreepeqkk qepvkawaah vreepeqkkq
      541 etqeawekad rqhqvssqql qnppkswgaa svgpkeqmgp kkfdiepkev pkpvhqpaae
      601 fcststlpkd pvlrreklqd lmtqiqgtyn fmqesildfd kaspsavgss qppsvtpass
      661 pvaskeqklp sqsdflqqpl qaaaassvtl hgsntslasa dqtlsvseae dlvttqtpqa
      721 saslsqetek ytsqplyqss sriseplipk kieiaqatip lqsepqsplp tsstsmspvp
      781 paqsfqsppa ssssvtikaa pfqamqtvfk vnaplpprkd qeikedssyt agynqsfsta
      841 stqttpqcql qsshiaeqts lsqeslssav nyqpdgavpv sngslafypa qtnviprppq
      901 pyinsrgsvr gsarggrsla nsyrspggyk gfdayrgsps itngnygqlq fpgrdyagmp
      961 ysqrdvnyqq cykrggitsg pransragws dssqvssper dnetfnsgds gqgdsrsitp
     1021 vdmpvtsqaa tilpvhvypl pqqmrvafsa artsnlapgt ldqpivfdll lnnlgetfdi
     1081 qlgrfncpvn gtyvfifhml klavnvplyv nlmkneevlv sayandgapd hetasnhavl
     1141 qlfqgdqiwl rlhrgaiygs swkystfsgy llyqd
//
LOCUS       XP_053943919            1175 aa            linear   VRT 09-MAR-2023
DEFINITION  caprin-2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053943919
VERSION     XP_053943919.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087944.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1175
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1175
                     /product="caprin-2 isoform X3"
                     /calculated_mol_wt=131852
     Region          142..257
                     /region_name="Caprin-1_dimer"
                     /note="Caprin-1 dimerization domain; pfam18293"
                     /db_xref="CDD:436391"
     Region          <269..610
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          618..983
                     /region_name="Caprin-1_C"
                     /note="Cytoplasmic activation/proliferation-associated
                     protein-1 C term; pfam12287"
                     /db_xref="CDD:463522"
     Region          1047..1172
                     /region_name="C1q"
                     /note="C1q domain; pfam00386"
                     /db_xref="CDD:395310"
     CDS             1..1175
                     /gene="CAPRIN2"
                     /coded_by="XM_054087944.1:35..3562"
                     /db_xref="GeneID:104056353"
ORIGIN      
        1 mvqlsqapfr rsspsgrsee gedksmkaak qqvnpsgenq ppssplqsal nsaaspsqay
       61 etyidnglic lkhkirniek kklkledykd rlkkgealnq dqleavekyd evvhnlefak
      121 elqktfsgls qdllkaqrka qrresllkle aekkklrtil qvqyvlqnft lehvqkdfkg
      181 gvngaiylps keldylirfa kltcpernes lsvedqmeqs slyfwdlleg sekpvvgtty
      241 khmkdllskl ldsgyfesip tprspvpvke leevkrsera rqmskgepvk epesimelmk
      301 seiqpqefln rcylaeaeys vkkrpeepks weaectrkqe ppkswemlvd ieeqqqkrkq
      361 ealkpwearv rqqepkrads pkpwearvke eeqkresakp wetpaeeeeq kkqeapkawv
      421 phvqeeqesp kpwaakaree qgqkkqelsk pwvakvreeq eqkkqespkp wvtkikeepe
      481 qkrespkpwv tqtreqpeqk kpepmkswem pvreepeqkk qepvkawaah vreepeqkkq
      541 etqeawekad rqhqvssqql qnppkswgaa svgpkeqmgp kkfdiepkev pkpvhqpaae
      601 fcststlpkd pvlrreklqd lmtqiqgtyn fmqesildfd kaspsavgss qppsvtpass
      661 pvaskeqklp sqsdflqqpl qaaaassvtl hgsntslasa dqtlsvseae dlvttqtpqa
      721 saslsqetek ytsqplyqss sriseplipk kieiaqatip lqsepqsplp tsstsmspvp
      781 paqsfqsppa ssssvtikaa pfqamqtvfk vnaplpprkd qeikedssyt agynqsfsta
      841 stqttpqcql qsshiaeqts lsqeslssav nyqpdgavpv sngslafypa qtnviprppq
      901 pyinsrgsvr gsarggrsla nsyrspggyk gfdayrgsps itngnygqlq fpgrdyagmp
      961 ysqrdvnyqq cykrggitsg pransragws dssqvssper dnetfnsgds gqgdsrsitp
     1021 vdmpvtsqaa tilpvhvypl pqqmrvafsa artsnlapgt ldqpivfdll lnnlgetfdi
     1081 qlgrfncpvn gtyvfifhml klavnvplyv nlmkneevlv sayandgapd hetasnhavl
     1141 qlfqgdqiwl rlhrgaiygs swkystfsgy llyqd
//
LOCUS       XP_053943925            1150 aa            linear   VRT 09-MAR-2023
DEFINITION  caprin-2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053943925
VERSION     XP_053943925.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087950.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1150
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1150
                     /product="caprin-2 isoform X1"
                     /calculated_mol_wt=129104
     Region          117..232
                     /region_name="Caprin-1_dimer"
                     /note="Caprin-1 dimerization domain; pfam18293"
                     /db_xref="CDD:436391"
     Region          <244..585
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          593..958
                     /region_name="Caprin-1_C"
                     /note="Cytoplasmic activation/proliferation-associated
                     protein-1 C term; pfam12287"
                     /db_xref="CDD:463522"
     Region          1022..1147
                     /region_name="C1q"
                     /note="C1q domain; pfam00386"
                     /db_xref="CDD:395310"
     CDS             1..1150
                     /gene="CAPRIN2"
                     /coded_by="XM_054087950.1:77..3529"
                     /db_xref="GeneID:104056353"
ORIGIN      
        1 mkaakqqvnp sgenqppssp lqsalnsaas psqayetyid ngliclkhki rniekkklkl
       61 edykdrlkkg ealnqdqlea vekydevvhn lefakelqkt fsglsqdllk aqrkaqrres
      121 llkleaekkk lrtilqvqyv lqnftlehvq kdfkggvnga iylpskeldy lirfakltcp
      181 erneslsved qmeqsslyfw dllegsekpv vgttykhmkd llsklldsgy fesiptprsp
      241 vpvkeleevk rserarqmsk gepvkepesi melmkseiqp qeflnrcyla eaeysvkkrp
      301 eepksweaec trkqeppksw emlvdieeqq qkrkqealkp wearvrqqep kradspkpwe
      361 arvkeeeqkr esakpwetpa eeeeqkkqea pkawvphvqe eqespkpwaa kareeqgqkk
      421 qelskpwvak vreeqeqkkq espkpwvtki keepeqkres pkpwvtqtre qpeqkkpepm
      481 kswempvree peqkkqepvk awaahvreep eqkkqetqea wekadrqhqv ssqqlqnppk
      541 swgaasvgpk eqmgpkkfdi epkevpkpvh qpaaefcsts tlpkdpvlrr eklqdlmtqi
      601 qgtynfmqes ildfdkasps avgssqppsv tpasspvask eqklpsqsdf lqqplqaaaa
      661 ssvtlhgsnt slasadqtls vseaedlvtt qtpqasasls qetekytsqp lyqsssrise
      721 plipkkieia qatiplqsep qsplptssts mspvppaqsf qsppassssv tikaapfqam
      781 qtvfkvnapl pprkdqeike dssytagynq sfstastqtt pqcqlqsshi aeqtslsqes
      841 lssavnyqpd gavpvsngsl afypaqtnvi prppqpyins rgsvrgsarg grslansyrs
      901 pggykgfday rgspsitngn ygqlqfpgrd yagmpysqrd vnyqqcykrg gitsgprans
      961 ragwsdssqv ssperdnetf nsgdsgqgds rsitpvdmpv tsqaatilpv hvyplpqqmr
     1021 vafsaartsn lapgtldqpi vfdlllnnlg etfdiqlgrf ncpvngtyvf ifhmlklavn
     1081 vplyvnlmkn eevlvsayan dgapdhetas nhavlqlfqg dqiwlrlhrg aiygsswkys
     1141 tfsgyllyqd
//
LOCUS       XP_053943933            1150 aa            linear   VRT 09-MAR-2023
DEFINITION  caprin-2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053943933
VERSION     XP_053943933.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087958.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1150
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1150
                     /product="caprin-2 isoform X1"
                     /calculated_mol_wt=129104
     Region          117..232
                     /region_name="Caprin-1_dimer"
                     /note="Caprin-1 dimerization domain; pfam18293"
                     /db_xref="CDD:436391"
     Region          <244..585
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          593..958
                     /region_name="Caprin-1_C"
                     /note="Cytoplasmic activation/proliferation-associated
                     protein-1 C term; pfam12287"
                     /db_xref="CDD:463522"
     Region          1022..1147
                     /region_name="C1q"
                     /note="C1q domain; pfam00386"
                     /db_xref="CDD:395310"
     CDS             1..1150
                     /gene="CAPRIN2"
                     /coded_by="XM_054087958.1:136..3588"
                     /db_xref="GeneID:104056353"
ORIGIN      
        1 mkaakqqvnp sgenqppssp lqsalnsaas psqayetyid ngliclkhki rniekkklkl
       61 edykdrlkkg ealnqdqlea vekydevvhn lefakelqkt fsglsqdllk aqrkaqrres
      121 llkleaekkk lrtilqvqyv lqnftlehvq kdfkggvnga iylpskeldy lirfakltcp
      181 erneslsved qmeqsslyfw dllegsekpv vgttykhmkd llsklldsgy fesiptprsp
      241 vpvkeleevk rserarqmsk gepvkepesi melmkseiqp qeflnrcyla eaeysvkkrp
      301 eepksweaec trkqeppksw emlvdieeqq qkrkqealkp wearvrqqep kradspkpwe
      361 arvkeeeqkr esakpwetpa eeeeqkkqea pkawvphvqe eqespkpwaa kareeqgqkk
      421 qelskpwvak vreeqeqkkq espkpwvtki keepeqkres pkpwvtqtre qpeqkkpepm
      481 kswempvree peqkkqepvk awaahvreep eqkkqetqea wekadrqhqv ssqqlqnppk
      541 swgaasvgpk eqmgpkkfdi epkevpkpvh qpaaefcsts tlpkdpvlrr eklqdlmtqi
      601 qgtynfmqes ildfdkasps avgssqppsv tpasspvask eqklpsqsdf lqqplqaaaa
      661 ssvtlhgsnt slasadqtls vseaedlvtt qtpqasasls qetekytsqp lyqsssrise
      721 plipkkieia qatiplqsep qsplptssts mspvppaqsf qsppassssv tikaapfqam
      781 qtvfkvnapl pprkdqeike dssytagynq sfstastqtt pqcqlqsshi aeqtslsqes
      841 lssavnyqpd gavpvsngsl afypaqtnvi prppqpyins rgsvrgsarg grslansyrs
      901 pggykgfday rgspsitngn ygqlqfpgrd yagmpysqrd vnyqqcykrg gitsgprans
      961 ragwsdssqv ssperdnetf nsgdsgqgds rsitpvdmpv tsqaatilpv hvyplpqqmr
     1021 vafsaartsn lapgtldqpi vfdlllnnlg etfdiqlgrf ncpvngtyvf ifhmlklavn
     1081 vplyvnlmkn eevlvsayan dgapdhetas nhavlqlfqg dqiwlrlhrg aiygsswkys
     1141 tfsgyllyqd
//
LOCUS       XP_053943942            1150 aa            linear   VRT 09-MAR-2023
DEFINITION  caprin-2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053943942
VERSION     XP_053943942.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087967.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1150
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1150
                     /product="caprin-2 isoform X1"
                     /calculated_mol_wt=129104
     Region          117..232
                     /region_name="Caprin-1_dimer"
                     /note="Caprin-1 dimerization domain; pfam18293"
                     /db_xref="CDD:436391"
     Region          <244..585
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          593..958
                     /region_name="Caprin-1_C"
                     /note="Cytoplasmic activation/proliferation-associated
                     protein-1 C term; pfam12287"
                     /db_xref="CDD:463522"
     Region          1022..1147
                     /region_name="C1q"
                     /note="C1q domain; pfam00386"
                     /db_xref="CDD:395310"
     CDS             1..1150
                     /gene="CAPRIN2"
                     /coded_by="XM_054087967.1:55..3507"
                     /db_xref="GeneID:104056353"
ORIGIN      
        1 mkaakqqvnp sgenqppssp lqsalnsaas psqayetyid ngliclkhki rniekkklkl
       61 edykdrlkkg ealnqdqlea vekydevvhn lefakelqkt fsglsqdllk aqrkaqrres
      121 llkleaekkk lrtilqvqyv lqnftlehvq kdfkggvnga iylpskeldy lirfakltcp
      181 erneslsved qmeqsslyfw dllegsekpv vgttykhmkd llsklldsgy fesiptprsp
      241 vpvkeleevk rserarqmsk gepvkepesi melmkseiqp qeflnrcyla eaeysvkkrp
      301 eepksweaec trkqeppksw emlvdieeqq qkrkqealkp wearvrqqep kradspkpwe
      361 arvkeeeqkr esakpwetpa eeeeqkkqea pkawvphvqe eqespkpwaa kareeqgqkk
      421 qelskpwvak vreeqeqkkq espkpwvtki keepeqkres pkpwvtqtre qpeqkkpepm
      481 kswempvree peqkkqepvk awaahvreep eqkkqetqea wekadrqhqv ssqqlqnppk
      541 swgaasvgpk eqmgpkkfdi epkevpkpvh qpaaefcsts tlpkdpvlrr eklqdlmtqi
      601 qgtynfmqes ildfdkasps avgssqppsv tpasspvask eqklpsqsdf lqqplqaaaa
      661 ssvtlhgsnt slasadqtls vseaedlvtt qtpqasasls qetekytsqp lyqsssrise
      721 plipkkieia qatiplqsep qsplptssts mspvppaqsf qsppassssv tikaapfqam
      781 qtvfkvnapl pprkdqeike dssytagynq sfstastqtt pqcqlqsshi aeqtslsqes
      841 lssavnyqpd gavpvsngsl afypaqtnvi prppqpyins rgsvrgsarg grslansyrs
      901 pggykgfday rgspsitngn ygqlqfpgrd yagmpysqrd vnyqqcykrg gitsgprans
      961 ragwsdssqv ssperdnetf nsgdsgqgds rsitpvdmpv tsqaatilpv hvyplpqqmr
     1021 vafsaartsn lapgtldqpi vfdlllnnlg etfdiqlgrf ncpvngtyvf ifhmlklavn
     1081 vplyvnlmkn eevlvsayan dgapdhetas nhavlqlfqg dqiwlrlhrg aiygsswkys
     1141 tfsgyllyqd
//
LOCUS       XP_053943951             868 aa            linear   VRT 09-MAR-2023
DEFINITION  caprin-2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053943951
VERSION     XP_053943951.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087976.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..868
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..868
                     /product="caprin-2 isoform X4"
                     /calculated_mol_wt=95474
     Region          117..232
                     /region_name="Caprin-1_dimer"
                     /note="Caprin-1 dimerization domain; pfam18293"
                     /db_xref="CDD:436391"
     Region          311..676
                     /region_name="Caprin-1_C"
                     /note="Cytoplasmic activation/proliferation-associated
                     protein-1 C term; pfam12287"
                     /db_xref="CDD:463522"
     Region          740..865
                     /region_name="C1q"
                     /note="C1q domain; pfam00386"
                     /db_xref="CDD:395310"
     CDS             1..868
                     /gene="CAPRIN2"
                     /coded_by="XM_054087976.1:83..2689"
                     /db_xref="GeneID:104056353"
ORIGIN      
        1 mkaakqqvnp sgenqppssp lqsalnsaas psqayetyid ngliclkhki rniekkklkl
       61 edykdrlkkg ealnqdqlea vekydevvhn lefakelqkt fsglsqdllk aqrkaqrres
      121 llkleaekkk lrtilqvqyv lqnftlehvq kdfkggvnga iylpskeldy lirfakltcp
      181 erneslsved qmeqsslyfw dllegsekpv vgttykhmkd llsklldsgy fesiptprsp
      241 vpvkeleevk rserarqmsk gepvkepesi melmkseiqp qevpkpvhqp aaefcststl
      301 pkdpvlrrek lqdlmtqiqg tynfmqesil dfdkaspsav gssqppsvtp asspvaskeq
      361 klpsqsdflq qplqaaaass vtlhgsntsl asadqtlsvs eaedlvttqt pqasaslsqe
      421 tekytsqply qsssrisepl ipkkieiaqa tiplqsepqs plptsstsms pvppaqsfqs
      481 ppassssvti kaapfqamqt vfkvnaplpp rkdqeikeds sytagynqsf stastqttpq
      541 cqlqsshiae qtslsqesls savnyqpdga vpvsngslaf ypaqtnvipr ppqpyinsrg
      601 svrgsarggr slansyrspg gykgfdayrg spsitngnyg qlqfpgrdya gmpysqrdvn
      661 yqqcykrggi tsgpransra gwsdssqvss perdnetfns gdsgqgdsrs itpvdmpvts
      721 qaatilpvhv yplpqqmrva fsaartsnla pgtldqpivf dlllnnlget fdiqlgrfnc
      781 pvngtyvfif hmlklavnvp lyvnlmknee vlvsayandg apdhetasnh avlqlfqgdq
      841 iwlrlhrgai ygsswkystf sgyllyqd
//
LOCUS       XP_053943961            1174 aa            linear   VRT 09-MAR-2023
DEFINITION  caprin-2 isoform X5 [Cuculus canorus].
ACCESSION   XP_053943961
VERSION     XP_053943961.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054087986.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1174
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1174
                     /product="caprin-2 isoform X5"
                     /calculated_mol_wt=131781
     Region          142..257
                     /region_name="Caprin-1_dimer"
                     /note="Caprin-1 dimerization domain; pfam18293"
                     /db_xref="CDD:436391"
     Region          <269..610
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          618..982
                     /region_name="Caprin-1_C"
                     /note="Cytoplasmic activation/proliferation-associated
                     protein-1 C term; pfam12287"
                     /db_xref="CDD:463522"
     Region          1046..1171
                     /region_name="C1q"
                     /note="C1q domain; pfam00386"
                     /db_xref="CDD:395310"
     CDS             1..1174
                     /gene="CAPRIN2"
                     /coded_by="XM_054087986.1:42..3566"
                     /db_xref="GeneID:104056353"
ORIGIN      
        1 mvqlsqapfr rsspsgrsee gedksmkaak qqvnpsgenq ppssplqsal nsaaspsqay
       61 etyidnglic lkhkirniek kklkledykd rlkkgealnq dqleavekyd evvhnlefak
      121 elqktfsgls qdllkaqrka qrresllkle aekkklrtil qvqyvlqnft lehvqkdfkg
      181 gvngaiylps keldylirfa kltcpernes lsvedqmeqs slyfwdlleg sekpvvgtty
      241 khmkdllskl ldsgyfesip tprspvpvke leevkrsera rqmskgepvk epesimelmk
      301 seiqpqefln rcylaeaeys vkkrpeepks weaectrkqe ppkswemlvd ieeqqqkrkq
      361 ealkpwearv rqqepkrads pkpwearvke eeqkresakp wetpaeeeeq kkqeapkawv
      421 phvqeeqesp kpwaakaree qgqkkqelsk pwvakvreeq eqkkqespkp wvtkikeepe
      481 qkrespkpwv tqtreqpeqk kpepmkswem pvreepeqkk qepvkawaah vreepeqkkq
      541 etqeawekad rqhqvssqql qnppkswgaa svgpkeqmgp kkfdiepkev pkpvhqpaae
      601 fcststlpkd pvlrreklqd lmtqiqgtyn fmqesildfd kaspsavgss qppsvtpass
      661 pvaskeqklp sqsdflqqpl qaaaassvtl hgsntslasa dqtlsvseae dlvttqtpqa
      721 saslsqetek ytsqplyqss sriseplipk kieiaqatip lqsepqsplp tsstsmspvp
      781 paqsfqsppa ssssvtikaa pfqamqtvfk vnaplpprkd qeikedssyt agynqsfsta
      841 stqttpqcql qsshiaeqts lsqeslssvn yqpdgavpvs ngslafypaq tnviprppqp
      901 yinsrgsvrg sarggrslan syrspggykg fdayrgspsi tngnygqlqf pgrdyagmpy
      961 sqrdvnyqqc ykrggitsgp ransragwsd ssqvssperd netfnsgdsg qgdsrsitpv
     1021 dmpvtsqaat ilpvhvyplp qqmrvafsaa rtsnlapgtl dqpivfdlll nnlgetfdiq
     1081 lgrfncpvng tyvfifhmlk lavnvplyvn lmkneevlvs ayandgapdh etasnhavlq
     1141 lfqgdqiwlr lhrgaiygss wkystfsgyl lyqd
//
LOCUS       XP_053943978            1497 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA polymerase alpha catalytic subunit [Cuculus canorus].
ACCESSION   XP_053943978
VERSION     XP_053943978.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088003.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1497
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1497
                     /product="DNA polymerase alpha catalytic subunit"
                     /calculated_mol_wt=170099
     Region          52..1250
                     /region_name="pol2"
                     /note="DNA polymerase (pol2); TIGR00592"
                     /db_xref="CDD:273159"
     Region          1291..1481
                     /region_name="zf-DNA_Pol"
                     /note="DNA Polymerase alpha zinc finger; pfam08996"
                     /db_xref="CDD:462651"
     CDS             1..1497
                     /gene="POLA1"
                     /coded_by="XM_054088003.1:85..4578"
                     /db_xref="GeneID:104059417"
ORIGIN      
        1 maesgargrd ampesgsyaa srsrrenksr rgqqaalell kkakagekik yeveeftgvy
       61 deideeeysk mvrerqdddw ivdddgvgyv edgreifded ldddalssnk kgkggktstv
      121 dkknvkksvv skpntiksmf iasagkkntd ktvdlskddl lgdilqdlna eispppiitl
      181 krkrsagvpl npfsvpsqtp kvitpvpkka pahlrkeals pasfrpkhls saaksvvvse
      241 nedtkyvrka tengevvktv eekaieddhp gmmdfdeedf depmeaehve tvpetaeslk
      301 rdkeikkqet eqleskkets ilscplpdis cwdgieedea dlivadvqld pnilplvnge
      361 nddrvlkfyw ldayedqfsq pgvvflfgkv wiesantyvs ccvtvknier tvyllprete
      421 idlstgkete tpvtimsvfk efndcvspky kimkfkskkv eksyafeipd vpakseylev
      481 kylaecprlp qdlkgqtfsh vfgtntssle llllsrkikg pcwleiktpq pstqsvswck
      541 veavamkpgl vsvskdlspp pplvvmsfsm kttqnpkthq neivavaalm hqkfpldkap
      601 pqppfqthfc avskpndcif pydfkevikn knarieiaat ertllgffla kihkidpdvl
      661 vghniygfdl evllqrinvc kvphwskigr lrrsnmpklg grggfaerna acgrmicdve
      721 lsakelirck syhlselvhq ilkmervtil peeirnmysd sshlmfmlen twtdakfilq
      781 imcelnvlpl alqitniagn vmsrtlmggr serneflllh afherdyivp dkqvfkkplq
      841 klvdededfe dqnkskigkk kaayagglvl dpkvgfydkf illldfnsly psiiqefnic
      901 fttvqrlsse aqkraeveee eeipelpdps lemgvlpkei rklverrrqv kqlmkqpdln
      961 pdlylqydir qkalkltans mygclgfsys rfyakplaal vthkgreilm htkemvqkmn
     1021 leviygdtds imintnstnl devfklgnki ksevnklykl leididgvfk sllllkkkky
     1081 aaltveptgg gkyvtkqelk gldivrrdwc dlaketgnyi igqilsdqpr dviveniqrr
     1141 lievgenvmn gqipvnqfei nkaltkdpqd ypdrkslphv hvamwinsqg grkvkagdtv
     1201 syiicqdgsd lsanqrayap eqlqkqdnlt idtqyylsqq ihpvvarice piegidsvli
     1261 atwlgldpsq frvhhhyhkd eengalvggp aqltdeekyr dcerfkfccl kcgteniydn
     1321 vfdgsgrfie pslqrcskte cgeppfnsvv qmnnkllldi rryirkyyng wliceepacq
     1381 nrtrrlplsf srsgpvcqac rkavlrpeys dkalytqlcf yryifdveya tdkviteedr
     1441 eylkkqplrr evseaykrlk stvdkclsms gysevnlgkl ftisigrsvv esnnekq
//
LOCUS       XP_053943985             348 aa            linear   VRT 09-MAR-2023
DEFINITION  citramalyl-CoA lyase, mitochondrial [Cuculus canorus].
ACCESSION   XP_053943985
VERSION     XP_053943985.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088010.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..348
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..348
                     /product="citramalyl-CoA lyase, mitochondrial"
                     /calculated_mol_wt=38986
     Region          52..348
                     /region_name="CitE"
                     /note="Citrate lyase beta subunit [Carbohydrate transport
                     and metabolism]; COG2301"
                     /db_xref="CDD:441876"
     CDS             1..348
                     /gene="CLYBL"
                     /coded_by="XM_054088010.1:71..1117"
                     /db_xref="GeneID:104057299"
ORIGIN      
        1 mmrlpmmmaa gpawilsrag lrlrrrrlvd sllpaavpkl syhfasshky iprravlyvp
       61 addekkirki pslnvdcavl dcedgvalnr kkearrtvvk tleefdlgra ekcvrinsvs
      121 sglaeedlev llqsktlpss mmlpkvenve eirwfsdkfl hhlkgrtlve pmnfipfvet
      181 avgllnfkav ceearrtgsq vgfhldavvf ggedfrasig atsskethdi lyarqkiivt
      241 akafglqaid lvyidfrdee glrrqsrega smgftgkqvi hpnqiavvqe qfspspekik
      301 waqelisafe ehqrlgkgaf tfhgsmidmp llkqaqnivt lataikek
//
LOCUS       XP_053943995             117 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin-like protein 3 [Cuculus canorus].
ACCESSION   XP_053943995
VERSION     XP_053943995.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088020.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..117
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..117
                     /product="ubiquitin-like protein 3"
                     /calculated_mol_wt=13082
     Region          10..91
                     /region_name="Ubl_UBL3"
                     /note="ubiquitin-like (Ubl) domain found in ubiquitin-like
                     protein 3 (UBL3) and similar proteins; cd17048"
                     /db_xref="CDD:340568"
     CDS             1..117
                     /gene="UBL3"
                     /coded_by="XM_054088020.1:268..621"
                     /db_xref="GeneID:104064236"
ORIGIN      
        1 msssvpadmi nlrlilvsgk tkeflfspnd saadiakhvy dnwpmdweee qvsspnilrl
       61 iyqgrflhgn vtlgalklpf gkttvmhlva retlpepnsq gqrnrektre snccvil
//
LOCUS       XP_053944000             569 aa            linear   VRT 09-MAR-2023
DEFINITION  NXPE family member 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053944000
VERSION     XP_053944000.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088025.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..569
                     /product="NXPE family member 3 isoform X1"
                     /calculated_mol_wt=65194
     Region          83..293
                     /region_name="Neurexophilin"
                     /note="pfam06312"
                     /db_xref="CDD:428882"
     CDS             1..569
                     /gene="NXPE3"
                     /coded_by="XM_054088025.1:203..1912"
                     /db_xref="GeneID:104054268"
ORIGIN      
        1 mwrdsfrlqi fcllmavlav vvlvhnffql elfmifqtwh ldddtisgsn witednvqrs
       61 lsqttktark lycgfkqqtl skreqaeqes llaavqwpkp pdgkiafvqs tdpahsdfvi
      121 vkpsgffkvg dqlevlvrmk dfegkakqyg gdylqarihs pllkagatgr ivdchnglyk
      181 vfftllwpge vkvsvslvhp seaiqvllrl reerpdrvyf kslfksgrys ettecniclp
      241 gdlpvcnftd lytgepwfcy kprklscasr ishakggyqk glltqeeslf fqsdvnikkp
      301 ilssgpdsvi vkykaftdls smdraedptv spsgyyyedq wrsrthwihh fnksdditkc
      361 legklihlfg dstirqwfey ltafvpdlve fnlgspknvg pfmavdlkhn illkfrchgp
      421 pirfstvfss elryianeln givggrntvi aitiwshfst fpvevyirrl rnirrsiiql
      481 ldrspktlii irtanvqelg pevslfnsdw ysfqldsvmr kmfsgiavhf vdawemslah
      541 ylphnlhpke vivknqidaf lsyvcplqt
//
LOCUS       XP_053944005             569 aa            linear   VRT 09-MAR-2023
DEFINITION  NXPE family member 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053944005
VERSION     XP_053944005.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088030.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..569
                     /product="NXPE family member 3 isoform X1"
                     /calculated_mol_wt=65194
     Region          83..293
                     /region_name="Neurexophilin"
                     /note="pfam06312"
                     /db_xref="CDD:428882"
     CDS             1..569
                     /gene="NXPE3"
                     /coded_by="XM_054088030.1:185..1894"
                     /db_xref="GeneID:104054268"
ORIGIN      
        1 mwrdsfrlqi fcllmavlav vvlvhnffql elfmifqtwh ldddtisgsn witednvqrs
       61 lsqttktark lycgfkqqtl skreqaeqes llaavqwpkp pdgkiafvqs tdpahsdfvi
      121 vkpsgffkvg dqlevlvrmk dfegkakqyg gdylqarihs pllkagatgr ivdchnglyk
      181 vfftllwpge vkvsvslvhp seaiqvllrl reerpdrvyf kslfksgrys ettecniclp
      241 gdlpvcnftd lytgepwfcy kprklscasr ishakggyqk glltqeeslf fqsdvnikkp
      301 ilssgpdsvi vkykaftdls smdraedptv spsgyyyedq wrsrthwihh fnksdditkc
      361 legklihlfg dstirqwfey ltafvpdlve fnlgspknvg pfmavdlkhn illkfrchgp
      421 pirfstvfss elryianeln givggrntvi aitiwshfst fpvevyirrl rnirrsiiql
      481 ldrspktlii irtanvqelg pevslfnsdw ysfqldsvmr kmfsgiavhf vdawemslah
      541 ylphnlhpke vivknqidaf lsyvcplqt
//
LOCUS       XP_053944007             561 aa            linear   VRT 09-MAR-2023
DEFINITION  NXPE family member 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053944007
VERSION     XP_053944007.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088032.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..561
                     /product="NXPE family member 3 isoform X2"
                     /calculated_mol_wt=64127
     Region          75..285
                     /region_name="Neurexophilin"
                     /note="pfam06312"
                     /db_xref="CDD:428882"
     CDS             1..561
                     /gene="NXPE3"
                     /coded_by="XM_054088032.1:203..1888"
                     /db_xref="GeneID:104054268"
ORIGIN      
        1 mwrdsfrlqi fcllmavlav vvlvhnffql ehldddtisg snwitednvq rslsqttkta
       61 rklycgfkqq tlskreqaeq esllaavqwp kppdgkiafv qstdpahsdf vivkpsgffk
      121 vgdqlevlvr mkdfegkakq yggdylqari hspllkagat grivdchngl ykvfftllwp
      181 gevkvsvslv hpseaiqvll rlreerpdrv yfkslfksgr ysettecnic lpgdlpvcnf
      241 tdlytgepwf cykprklsca srishakggy qkglltqees lffqsdvnik kpilssgpds
      301 vivkykaftd lssmdraedp tvspsgyyye dqwrsrthwi hhfnksddit kclegklihl
      361 fgdstirqwf eyltafvpdl vefnlgspkn vgpfmavdlk hnillkfrch gppirfstvf
      421 sselryiane lngivggrnt viaitiwshf stfpvevyir rlrnirrsii qlldrspktl
      481 iiirtanvqe lgpevslfns dwysfqldsv mrkmfsgiav hfvdawemsl ahylphnlhp
      541 kevivknqid aflsyvcplq t
//
LOCUS       XP_053944012             536 aa            linear   VRT 09-MAR-2023
DEFINITION  NXPE family member 3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053944012
VERSION     XP_053944012.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088037.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..536
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..536
                     /product="NXPE family member 3 isoform X3"
                     /calculated_mol_wt=61212
     Region          50..260
                     /region_name="Neurexophilin"
                     /note="pfam06312"
                     /db_xref="CDD:428882"
     CDS             1..536
                     /gene="NXPE3"
                     /coded_by="XM_054088037.1:296..1906"
                     /db_xref="GeneID:104054268"
ORIGIN      
        1 mifqtwhldd dtisgsnwit ednvqrslsq ttktarklyc gfkqqtlskr eqaeqeslla
       61 avqwpkppdg kiafvqstdp ahsdfvivkp sgffkvgdql evlvrmkdfe gkakqyggdy
      121 lqarihspll kagatgrivd chnglykvff tllwpgevkv svslvhpsea iqvllrlree
      181 rpdrvyfksl fksgrysett ecniclpgdl pvcnftdlyt gepwfcykpr klscasrish
      241 akggyqkgll tqeeslffqs dvnikkpils sgpdsvivky kaftdlssmd raedptvsps
      301 gyyyedqwrs rthwihhfnk sdditkcleg klihlfgdst irqwfeylta fvpdlvefnl
      361 gspknvgpfm avdlkhnill kfrchgppir fstvfsselr yianelngiv ggrntviait
      421 iwshfstfpv evyirrlrni rrsiiqlldr spktliiirt anvqelgpev slfnsdwysf
      481 qldsvmrkmf sgiavhfvda wemslahylp hnlhpkeviv knqidaflsy vcplqt
//
LOCUS       XP_053944021             965 aa            linear   VRT 09-MAR-2023
DEFINITION  mitochondrial 10-formyltetrahydrofolate dehydrogenase isoform X1
            [Cuculus canorus].
ACCESSION   XP_053944021
VERSION     XP_053944021.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088046.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..965
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..965
                     /product="mitochondrial 10-formyltetrahydrofolate
                     dehydrogenase isoform X1"
                     /calculated_mol_wt=106343
     Region          66..268
                     /region_name="FMT_core_FDH_N"
                     /note="10-formyltetrahydrofolate dehydrogenase (FDH),
                     N-terminal hydrolase domain; cd08647"
                     /db_xref="CDD:187716"
     Site            order(72,75..77,148..152,154..155,160,169..172,180,200,
                     202..203,206..207)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:187716"
     Site            order(79..80,149..150,170,172,237)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:187716"
     Site            order(151..155,157,160,169,200,203,205,207)
                     /site_type="other"
                     /note="cosubstrate binding site"
                     /db_xref="CDD:187716"
     Site            order(169,171,207)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:187716"
     Region          271..370
                     /region_name="FDH_Hydrolase_C"
                     /note="The C-terminal subdomain of the hydrolase domain on
                     the bi-functional protein 10-formyltetrahydrofolate
                     dehydrogenase; cd08703"
                     /db_xref="CDD:187731"
     Region          <356..>432
                     /region_name="alpha_am_amid"
                     /note="L-aminoadipate-semialdehyde dehydrogenase;
                     TIGR03443"
                     /db_xref="CDD:274582"
     Region          481..965
                     /region_name="ALDH_F1L_FTFDH"
                     /note="10-formyltetrahydrofolate dehydrogenase, ALDH
                     family 1L; cd07140"
                     /db_xref="CDD:143458"
     Site            order(545,547,551,554,592,595..596,600,602..612,618,623,
                     708,720,727,730,753,894,904,906..907,913,915..923,928,
                     930..932,934,938,940,943,945,957..965)
                     /site_type="other"
                     /note="homotetrameric interface [polypeptide binding]"
                     /db_xref="CDD:143458"
     Site            order(634..635,637..638,661,664,693..694,698..699,
                     712..715,718,721..722,736..738,770,867,869,897,935)
                     /site_type="other"
                     /note="NADP binding site [chemical binding]"
                     /db_xref="CDD:143458"
     Site            order(638,736,767,770)
                     /site_type="active"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:143458"
     CDS             1..965
                     /gene="ALDH1L2"
                     /coded_by="XM_054088046.1:122..3019"
                     /db_xref="GeneID:104060225"
ORIGIN      
        1 mrrlaglqrh rrrgcirrgv pprppvparc slgcrgrrdp gdkmlrtgpr llrslcttaa
       61 ayqqklklal igqsifgqev ynklrkeghk vvgvftvpdk ngqadplala aekdgtpvfk
      121 fprwrakgkp iqevveayks vgaelnvlpf ctqfipmdvi dcpkhgsiiy hpsilprhrg
      181 asainwtliq gdkkagftif waddgldtgp illqrecdvg qndtvddlyn rflfpegika
      241 mveavhliad gkapripqpk egatyegiqk kenaeipwdq paaalhnwir ghdkvpgawa
      301 tidgqvvtfy gsslldasvp agqelaikga srpglitkng lvvfgndgkm vlvrnlqfed
      361 gkmipaskyf stdetaalel teqekrmaed irdiwkgils nvaviedstd ffksgassmh
      421 vvrmleeikq kysglqlqne dvymatkfad fiqmavrkfr gedkeeelvi dyvsknvnnm
      481 tvnmpyqcfi ngqfinaedg ktydtinpad gsiiasvssa sladvdkava aakeafenge
      541 wgrmnarerg rlmyrladlm eehqeelati esidsgavyt lalkthvgms vqtfryfagw
      601 cdkiqgatip inqarpnhnl tftkkepigv caivipwnyp lmmlawksaa claagntlvl
      661 kpaqvtplts lkfaelsaka gfpkgvinil pgsgglvgqh lsehsdvrkv gftgstptgk
      721 qimksaatnl kkvslelggk spliifsdce ldravkmgmg avyfnkgenc iaagrlfvee
      781 sihdefvrkv veeikkmkig dpldrstdhg pqnhkahlek llkycetgvk egatlvyggr
      841 qvrrpgffme ptvftdvedh myiaqeesfg pvmviskfkn gdvdgvlrra ntteyglasg
      901 vftkdiskal yisekleagt vfintynktd vaapfggfkq sgfgkdlgee alheylrtka
      961 itvey
//
LOCUS       XP_053944028             819 aa            linear   VRT 09-MAR-2023
DEFINITION  mitochondrial 10-formyltetrahydrofolate dehydrogenase isoform X2
            [Cuculus canorus].
ACCESSION   XP_053944028
VERSION     XP_053944028.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088053.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..819
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..819
                     /product="mitochondrial 10-formyltetrahydrofolate
                     dehydrogenase isoform X2"
                     /calculated_mol_wt=90203
     Region          <8..122
                     /region_name="FMT_core"
                     /note="Formyltransferase, catalytic core domain; cl00395"
                     /db_xref="CDD:444886"
     Site            order(23,25,61)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:187675"
     Region          125..224
                     /region_name="FDH_Hydrolase_C"
                     /note="The C-terminal subdomain of the hydrolase domain on
                     the bi-functional protein 10-formyltetrahydrofolate
                     dehydrogenase; cd08703"
                     /db_xref="CDD:187731"
     Region          <210..>286
                     /region_name="alpha_am_amid"
                     /note="L-aminoadipate-semialdehyde dehydrogenase;
                     TIGR03443"
                     /db_xref="CDD:274582"
     Region          335..819
                     /region_name="ALDH_F1L_FTFDH"
                     /note="10-formyltetrahydrofolate dehydrogenase, ALDH
                     family 1L; cd07140"
                     /db_xref="CDD:143458"
     Site            order(399,401,405,408,446,449..450,454,456..466,472,477,
                     562,574,581,584,607,748,758,760..761,767,769..777,782,
                     784..786,788,792,794,797,799,811..819)
                     /site_type="other"
                     /note="homotetrameric interface [polypeptide binding]"
                     /db_xref="CDD:143458"
     Site            order(488..489,491..492,515,518,547..548,552..553,
                     566..569,572,575..576,590..592,624,721,723,751,789)
                     /site_type="other"
                     /note="NADP binding site [chemical binding]"
                     /db_xref="CDD:143458"
     Site            order(492,590,621,624)
                     /site_type="active"
                     /note="catalytic residues [active]"
                     /db_xref="CDD:143458"
     CDS             1..819
                     /gene="ALDH1L2"
                     /coded_by="XM_054088053.1:262..2721"
                     /db_xref="GeneID:104060225"
ORIGIN      
        1 mdklipwfip mdvidcpkhg siiyhpsilp rhrgasainw tliqgdkkag ftifwaddgl
       61 dtgpillqre cdvgqndtvd dlynrflfpe gikamveavh liadgkapri pqpkegatye
      121 giqkkenaei pwdqpaaalh nwirghdkvp gawatidgqv vtfygsslld asvpagqela
      181 ikgasrpgli tknglvvfgn dgkmvlvrnl qfedgkmipa skyfstdeta alelteqekr
      241 maedirdiwk gilsnvavie dstdffksga ssmhvvrmle eikqkysglq lqnedvymat
      301 kfadfiqmav rkfrgedkee elvidyvskn vnnmtvnmpy qcfingqfin aedgktydti
      361 npadgsiias vssasladvd kavaaakeaf engewgrmna rergrlmyrl adlmeehqee
      421 latiesidsg avytlalkth vgmsvqtfry fagwcdkiqg atipinqarp nhnltftkke
      481 pigvcaivip wnyplmmlaw ksaaclaagn tlvlkpaqvt pltslkfael sakagfpkgv
      541 inilpgsggl vgqhlsehsd vrkvgftgst ptgkqimksa atnlkkvsle lggkspliif
      601 sdceldravk mgmgavyfnk genciaagrl fveesihdef vrkvveeikk mkigdpldrs
      661 tdhgpqnhka hlekllkyce tgvkegatlv yggrqvrrpg ffmeptvftd vedhmyiaqe
      721 esfgpvmvis kfkngdvdgv lrrantteyg lasgvftkdi skalyisekl eagtvfinty
      781 nktdvaapfg gfkqsgfgkd lgeealheyl rtkaitvey
//
LOCUS       XP_009560277             573 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier family 41 member 2 [Cuculus canorus].
ACCESSION   XP_009560277
VERSION     XP_009560277.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009561982.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009560277.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..573
                     /product="solute carrier family 41 member 2"
                     /calculated_mol_wt=62417
     Region          200..334
                     /region_name="MgtE"
                     /note="Divalent cation transporter; pfam01769"
                     /db_xref="CDD:460317"
     Region          414..555
                     /region_name="MgtE"
                     /note="Divalent cation transporter; pfam01769"
                     /db_xref="CDD:460317"
     CDS             1..573
                     /gene="SLC41A2"
                     /coded_by="XM_009561982.2:557..2278"
                     /db_xref="GeneID:104060216"
ORIGIN      
        1 mtnckgrsai yktnskvhdr egfvnwtinl ntiqsdkflk lllsmvpvvy qinqderhkk
       61 vngvwqdglq paghnfnars eqhteyhhfs epsfhgsngh spsscspkyd dftsynycdg
      121 mdtsetdaml qednlssdsn ediivegsrk qpkesssima lqilvpflla gfgtvsagmv
      181 ldivqhwdvf knvtevfilv pallglkgnl emtlasrlst avnigkmdsp iekwnliign
      241 lalkqvqatv vgflaavaav ilgwipegky rfdhslllcs ssvatafias llqgiimvgv
      301 ivgskktgin pdnvatpiaa sfgdlitlai lawisqglyt cletyyyvsp lvgafflalt
      361 pmgiviaakh patrtvlhsg wepvitamvi ssigglildt tvsdpnlvgi vvytpvingi
      421 ggnlvaiqas ristylhlhs ipgelpeeak gcyypcktyy gtgvnnksaq vllllvipgh
      481 liflytihlm ksghtsltpi fiavylfaal lqvftllwia dwmvhhfwkk gkdpdsfsip
      541 yltalgdllg tallaigfhf lwligdrdgd vgd
//
LOCUS       XP_053944046             350 aa            linear   VRT 09-MAR-2023
DEFINITION  carbohydrate sulfotransferase 11 isoform X1 [Cuculus canorus].
ACCESSION   XP_053944046
VERSION     XP_053944046.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088071.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..350
                     /product="carbohydrate sulfotransferase 11 isoform X1"
                     /calculated_mol_wt=41304
     Region          111..342
                     /region_name="Sulfotransfer_2"
                     /note="Sulfotransferase family; pfam03567"
                     /db_xref="CDD:427369"
     CDS             1..350
                     /gene="CHST11"
                     /coded_by="XM_054088071.1:158..1210"
                     /db_xref="GeneID:104060215"
ORIGIN      
        1 mkpavlevmr mnrvcrmvlv tsvgsfilvi fyfqsmlhpv mrrnpfgmdi ccrkgsrspl
       61 qelynptqls ntailhqirr dqvtdtcran svssrkrrvl tpndlkhlvv dedhemiycy
      121 vpkvactnwk rvmmvltgrg kysdpmeipa neahvssnlk tlnqysipei nhrlknymkf
      181 lfvrepferl vsayrnkftq kyntsfhkry gtkivrrqrk natqealrkg ddvkfeefva
      241 ylidphtqre epfnehwqtv yslchpchih ydligkyetl eedsnyilql agvgnylkfp
      301 tyakstrttd emtteffqni ssehqtqlye vykldflmfn ysvpsylkme
//
LOCUS       XP_053944055             345 aa            linear   VRT 09-MAR-2023
DEFINITION  carbohydrate sulfotransferase 11 isoform X2 [Cuculus canorus].
ACCESSION   XP_053944055
VERSION     XP_053944055.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088080.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..345
                     /product="carbohydrate sulfotransferase 11 isoform X2"
                     /calculated_mol_wt=40752
     Region          106..337
                     /region_name="Sulfotransfer_2"
                     /note="Sulfotransferase family; pfam03567"
                     /db_xref="CDD:427369"
     CDS             1..345
                     /gene="CHST11"
                     /coded_by="XM_054088080.1:158..1195"
                     /db_xref="GeneID:104060215"
ORIGIN      
        1 mkpavlevmr mnrvcrmvlv tsvgsfilvi fyfqimrrnp fgmdiccrkg srsplqelyn
       61 ptqlsntail hqirrdqvtd tcransvssr krrvltpndl khlvvdedhe miycyvpkva
      121 ctnwkrvmmv ltgrgkysdp meipaneahv ssnlktlnqy sipeinhrlk nymkflfvre
      181 pferlvsayr nkftqkynts fhkrygtkiv rrqrknatqe alrkgddvkf eefvaylidp
      241 htqreepfne hwqtvyslch pchihydlig kyetleedsn yilqlagvgn ylkfptyaks
      301 trttdemtte ffqnissehq tqlyevykld flmfnysvps ylkme
//
LOCUS       XP_053944066             208 aa            linear   VRT 09-MAR-2023
DEFINITION  NOP protein chaperone 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053944066
VERSION     XP_053944066.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088091.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..208
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..208
                     /product="NOP protein chaperone 1 isoform X1"
                     /calculated_mol_wt=23072
     Region          103..>163
                     /region_name="NOPCHAP1"
                     /note="NOP protein chaperone 1; pfam15370"
                     /db_xref="CDD:405951"
     CDS             1..208
                     /gene="NOPCHAP1"
                     /coded_by="XM_054088091.1:25..651"
                     /db_xref="GeneID:104060217"
ORIGIN      
        1 mgddvmessp agkglrvlvd tsrqcalaaq kansvlgcik ssvasrereg ipalysspvr
       61 phlgycvqfw nphrleetll itskcksqka ttlqtvrmpr snildqvqnf lpqmahandd
      121 lrrkmvtapa hqfdiehlds atekviemnv aivelsdsdt deeiltsedd seseddcttd
      181 evtidnikfp kqkeekakie ildskvne
//
LOCUS       XP_053944074             155 aa            linear   VRT 09-MAR-2023
DEFINITION  NOP protein chaperone 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053944074
VERSION     XP_053944074.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088099.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..155
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..155
                     /product="NOP protein chaperone 1 isoform X2"
                     /calculated_mol_wt=17188
     Region          50..>110
                     /region_name="NOPCHAP1"
                     /note="NOP protein chaperone 1; pfam15370"
                     /db_xref="CDD:405951"
     CDS             1..155
                     /gene="NOPCHAP1"
                     /coded_by="XM_054088099.1:15..482"
                     /db_xref="GeneID:104060217"
ORIGIN      
        1 magqrgegas rellsagrrg gleetllits kcksqkattl qtvrmprsni ldqvqnflpq
       61 mahanddlrr kmvtapahqf diehldsate kviemnvaiv elsdsdtdee iltseddses
      121 eddcttdevt idnikfpkqk eekakieild skvne
//
LOCUS       XP_053944083             136 aa            linear   VRT 09-MAR-2023
DEFINITION  NOP protein chaperone 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053944083
VERSION     XP_053944083.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088108.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..136
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..136
                     /product="NOP protein chaperone 1 isoform X3"
                     /calculated_mol_wt=15377
     Region          31..>91
                     /region_name="NOPCHAP1"
                     /note="NOP protein chaperone 1; pfam15370"
                     /db_xref="CDD:405951"
     CDS             1..136
                     /gene="NOPCHAP1"
                     /coded_by="XM_054088108.1:239..649"
                     /db_xref="GeneID:104060217"
ORIGIN      
        1 mrleetllit skcksqkatt lqtvrmprsn ildqvqnflp qmahanddlr rkmvtapahq
       61 fdiehldsat ekviemnvai velsdsdtde eiltseddse seddcttdev tidnikfpkq
      121 keekakieil dskvne
//
LOCUS       XP_009555345             364 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich repeat-containing protein 58 [Cuculus canorus].
ACCESSION   XP_009555345
VERSION     XP_009555345.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557050.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555345.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..364
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..364
                     /product="leucine-rich repeat-containing protein 58"
                     /calculated_mol_wt=39582
     Region          <60..>240
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          63..85
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          86..114
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          115..137
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          138..160
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          161..183
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          184..206
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          207..229
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     CDS             1..364
                     /gene="LRRC58"
                     /coded_by="XM_009557050.2:35..1129"
                     /db_xref="GeneID:104055863"
ORIGIN      
        1 maaaeeamep eaersseege gdaaelsael rsrrsaetrr lvlsprrlpg slpaglaqwf
       61 palevldvsg tgltelgeel lalphlhtll aknnrlgapg slpkglgrap lgrslrvlnl
      121 sgnrfgevpp vllalrglrs lslggnrlhg ippdiqelrs leflylggnf itsippelan
      181 lpslsylvlc dnkiqsippq laqlhslrsl slhnnlltyl preilnlvhl eelslrgnpl
      241 vvrfvrdlty nppslqelag rtiktrnvpy apsdlpenlv rylslasncp npkcggvyfd
      301 scvrqikfvd fcgkyriplm hylcspecss pcssasqsst sqsesdsede asvaarrmqk
      361 vllg
//
LOCUS       XP_053944105             820 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Jade-3 [Cuculus canorus].
ACCESSION   XP_053944105
VERSION     XP_053944105.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088130.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..820
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..820
                     /product="protein Jade-3"
                     /calculated_mol_wt=92889
     Region          <90..179
                     /region_name="EPL1"
                     /note="Enhancer of polycomb-like; pfam10513"
                     /db_xref="CDD:463128"
     Region          140..>512
                     /region_name="COG5141"
                     /note="PHD zinc finger-containing protein [General
                     function prediction only]"
                     /db_xref="CDD:227470"
     Region          257..367
                     /region_name="ePHD_JADE3"
                     /note="Extended PHD finger found in protein Jade-3 and
                     similar proteins; cd15706"
                     /db_xref="CDD:277176"
     Site            order(313,323..327,333,362)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277176"
     CDS             1..820
                     /gene="JADE3"
                     /coded_by="XM_054088130.1:307..2769"
                     /db_xref="GeneID:104063737"
ORIGIN      
        1 mkrhrhlsts dssdnespst sfsscskyrs ksktpaneqk kpaevfrkdl isamklpdsh
       61 hvnpdeyyif adtwkqewek gvqvpaspet ipqpslrvva ekvkevlytr prkyihcssq
      121 eptepgyini lelaesmcry dlddmdifwl qelneeltem gcgpldentm ektievlerh
      181 chenmnhaie teeglgieyd edvicdvcrs pdsedgndmv fcdkcnicvh qacygilkvp
      241 egswlcrtcv lgihpqcllc pkrggamkat rtgtkwahvs calwipevsi acpermepit
      301 kvshippsrw alvcslcklk tgaciqcsvk scitafhvtc afehslemkt ilddgdevkf
      361 ksyclkhskn kqnslpdvde hpksvsdqkq tesektslra qklreleeef yslvkvedva
      421 aelglpklav dfiynywklk rksnfnkplf ppkedeengl vqpkedsiht rmrmfmhlrq
      481 dlervrnlcy mvsrreklkl shskvheqvf nlqvqlinqe iaaghtltsa lentlfyppp
      541 ritlklkmpk salgdcknns lkpgnrplsp dnnstvyskr svpmskesfe ikaksysryq
      601 hdsrsnglla gigkprseak dsgptqmpef hraqpsgkpl alqaalhgqs signgraqqe
      661 nsrlvaksng lmgragdvsq rdsssqtpye qesvltahla sqsgfrksti dhfsrsfkea
      721 tnslvrtted lrccekptrr laakdrlwsk qtlegapyqd ndgycpdlel sdseaesden
      781 keqvrlrrss serdspskdf gkdchnrnkk nmishssvqr
//
LOCUS       XP_053944111             820 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Jade-3 [Cuculus canorus].
ACCESSION   XP_053944111
VERSION     XP_053944111.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088136.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..820
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..820
                     /product="protein Jade-3"
                     /calculated_mol_wt=92889
     Region          <90..179
                     /region_name="EPL1"
                     /note="Enhancer of polycomb-like; pfam10513"
                     /db_xref="CDD:463128"
     Region          140..>512
                     /region_name="COG5141"
                     /note="PHD zinc finger-containing protein [General
                     function prediction only]"
                     /db_xref="CDD:227470"
     Region          257..367
                     /region_name="ePHD_JADE3"
                     /note="Extended PHD finger found in protein Jade-3 and
                     similar proteins; cd15706"
                     /db_xref="CDD:277176"
     Site            order(313,323..327,333,362)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277176"
     CDS             1..820
                     /gene="JADE3"
                     /coded_by="XM_054088136.1:483..2945"
                     /db_xref="GeneID:104063737"
ORIGIN      
        1 mkrhrhlsts dssdnespst sfsscskyrs ksktpaneqk kpaevfrkdl isamklpdsh
       61 hvnpdeyyif adtwkqewek gvqvpaspet ipqpslrvva ekvkevlytr prkyihcssq
      121 eptepgyini lelaesmcry dlddmdifwl qelneeltem gcgpldentm ektievlerh
      181 chenmnhaie teeglgieyd edvicdvcrs pdsedgndmv fcdkcnicvh qacygilkvp
      241 egswlcrtcv lgihpqcllc pkrggamkat rtgtkwahvs calwipevsi acpermepit
      301 kvshippsrw alvcslcklk tgaciqcsvk scitafhvtc afehslemkt ilddgdevkf
      361 ksyclkhskn kqnslpdvde hpksvsdqkq tesektslra qklreleeef yslvkvedva
      421 aelglpklav dfiynywklk rksnfnkplf ppkedeengl vqpkedsiht rmrmfmhlrq
      481 dlervrnlcy mvsrreklkl shskvheqvf nlqvqlinqe iaaghtltsa lentlfyppp
      541 ritlklkmpk salgdcknns lkpgnrplsp dnnstvyskr svpmskesfe ikaksysryq
      601 hdsrsnglla gigkprseak dsgptqmpef hraqpsgkpl alqaalhgqs signgraqqe
      661 nsrlvaksng lmgragdvsq rdsssqtpye qesvltahla sqsgfrksti dhfsrsfkea
      721 tnslvrtted lrccekptrr laakdrlwsk qtlegapyqd ndgycpdlel sdseaesden
      781 keqvrlrrss serdspskdf gkdchnrnkk nmishssvqr
//
LOCUS       XP_053944119             820 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Jade-3 [Cuculus canorus].
ACCESSION   XP_053944119
VERSION     XP_053944119.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088144.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..820
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..820
                     /product="protein Jade-3"
                     /calculated_mol_wt=92889
     Region          <90..179
                     /region_name="EPL1"
                     /note="Enhancer of polycomb-like; pfam10513"
                     /db_xref="CDD:463128"
     Region          140..>512
                     /region_name="COG5141"
                     /note="PHD zinc finger-containing protein [General
                     function prediction only]"
                     /db_xref="CDD:227470"
     Region          257..367
                     /region_name="ePHD_JADE3"
                     /note="Extended PHD finger found in protein Jade-3 and
                     similar proteins; cd15706"
                     /db_xref="CDD:277176"
     Site            order(313,323..327,333,362)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277176"
     CDS             1..820
                     /gene="JADE3"
                     /coded_by="XM_054088144.1:254..2716"
                     /db_xref="GeneID:104063737"
ORIGIN      
        1 mkrhrhlsts dssdnespst sfsscskyrs ksktpaneqk kpaevfrkdl isamklpdsh
       61 hvnpdeyyif adtwkqewek gvqvpaspet ipqpslrvva ekvkevlytr prkyihcssq
      121 eptepgyini lelaesmcry dlddmdifwl qelneeltem gcgpldentm ektievlerh
      181 chenmnhaie teeglgieyd edvicdvcrs pdsedgndmv fcdkcnicvh qacygilkvp
      241 egswlcrtcv lgihpqcllc pkrggamkat rtgtkwahvs calwipevsi acpermepit
      301 kvshippsrw alvcslcklk tgaciqcsvk scitafhvtc afehslemkt ilddgdevkf
      361 ksyclkhskn kqnslpdvde hpksvsdqkq tesektslra qklreleeef yslvkvedva
      421 aelglpklav dfiynywklk rksnfnkplf ppkedeengl vqpkedsiht rmrmfmhlrq
      481 dlervrnlcy mvsrreklkl shskvheqvf nlqvqlinqe iaaghtltsa lentlfyppp
      541 ritlklkmpk salgdcknns lkpgnrplsp dnnstvyskr svpmskesfe ikaksysryq
      601 hdsrsnglla gigkprseak dsgptqmpef hraqpsgkpl alqaalhgqs signgraqqe
      661 nsrlvaksng lmgragdvsq rdsssqtpye qesvltahla sqsgfrksti dhfsrsfkea
      721 tnslvrtted lrccekptrr laakdrlwsk qtlegapyqd ndgycpdlel sdseaesden
      781 keqvrlrrss serdspskdf gkdchnrnkk nmishssvqr
//
LOCUS       XP_053944128             820 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Jade-3 [Cuculus canorus].
ACCESSION   XP_053944128
VERSION     XP_053944128.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088153.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..820
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..820
                     /product="protein Jade-3"
                     /calculated_mol_wt=92889
     Region          <90..179
                     /region_name="EPL1"
                     /note="Enhancer of polycomb-like; pfam10513"
                     /db_xref="CDD:463128"
     Region          140..>512
                     /region_name="COG5141"
                     /note="PHD zinc finger-containing protein [General
                     function prediction only]"
                     /db_xref="CDD:227470"
     Region          257..367
                     /region_name="ePHD_JADE3"
                     /note="Extended PHD finger found in protein Jade-3 and
                     similar proteins; cd15706"
                     /db_xref="CDD:277176"
     Site            order(313,323..327,333,362)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277176"
     CDS             1..820
                     /gene="JADE3"
                     /coded_by="XM_054088153.1:430..2892"
                     /db_xref="GeneID:104063737"
ORIGIN      
        1 mkrhrhlsts dssdnespst sfsscskyrs ksktpaneqk kpaevfrkdl isamklpdsh
       61 hvnpdeyyif adtwkqewek gvqvpaspet ipqpslrvva ekvkevlytr prkyihcssq
      121 eptepgyini lelaesmcry dlddmdifwl qelneeltem gcgpldentm ektievlerh
      181 chenmnhaie teeglgieyd edvicdvcrs pdsedgndmv fcdkcnicvh qacygilkvp
      241 egswlcrtcv lgihpqcllc pkrggamkat rtgtkwahvs calwipevsi acpermepit
      301 kvshippsrw alvcslcklk tgaciqcsvk scitafhvtc afehslemkt ilddgdevkf
      361 ksyclkhskn kqnslpdvde hpksvsdqkq tesektslra qklreleeef yslvkvedva
      421 aelglpklav dfiynywklk rksnfnkplf ppkedeengl vqpkedsiht rmrmfmhlrq
      481 dlervrnlcy mvsrreklkl shskvheqvf nlqvqlinqe iaaghtltsa lentlfyppp
      541 ritlklkmpk salgdcknns lkpgnrplsp dnnstvyskr svpmskesfe ikaksysryq
      601 hdsrsnglla gigkprseak dsgptqmpef hraqpsgkpl alqaalhgqs signgraqqe
      661 nsrlvaksng lmgragdvsq rdsssqtpye qesvltahla sqsgfrksti dhfsrsfkea
      721 tnslvrtted lrccekptrr laakdrlwsk qtlegapyqd ndgycpdlel sdseaesden
      781 keqvrlrrss serdspskdf gkdchnrnkk nmishssvqr
//
LOCUS       XP_009562730             708 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich repeat neuronal protein 3 [Cuculus canorus].
ACCESSION   XP_009562730
VERSION     XP_009562730.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009564435.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009562730.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..708
                     /product="leucine-rich repeat neuronal protein 3"
                     /calculated_mol_wt=79481
     Region          52..70
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <69..325
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          71..93
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          94..117
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          118..141
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          142..165
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          166..189
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          190..213
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          214..237
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          238..261
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          262..285
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          286..310
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          311..333
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          336..359
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          341..>405
                     /region_name="PCC"
                     /note="polycystin cation channel protein; TIGR00864"
                     /db_xref="CDD:188093"
     Region          360..372
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          421..513
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          440..444
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          453..457
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          479..483
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          493..498
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          506..509
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          526..593
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     CDS             1..708
                     /gene="LRRN3"
                     /coded_by="XM_009564435.2:901..3027"
                     /db_xref="GeneID:104062390"
ORIGIN      
        1 mkdmqpkinf llglvitalv qavekkadcp esciceirpw ftpksvymea ptvdcndlgl
       61 fnfparlpan tqvlllqtnn iakiehsvdf pvnltgldls qnnlssvtsl nlrktpqlls
      121 vyleenklte lpeeclsglh nlqelyinhn llsviapgaf kglsnllrlh lnsnglqmin
      181 rkwfeatpnl eilmlgenpi iriedmnfep linlrslvla ginlteipdn alvgldnles
      241 isfydnrfvr vphialqkak nlkfldlnkn pinrirrgdf snmlhlkelg innmpelisi
      301 dslavdnlpd lrkieatnnp rlsyihpnaf yrlpkleslm lnsnalsaly rstveslpnl
      361 kevsihsnpi rcdcvirwin mnktnirfme peslfcvdpp efqgqnvrqi hfremmeicl
      421 pliapesfps tldlktgshi slhcrataep epeiywitps ghkllpntis nkyyihsegt
      481 ldirdvtqke sglytciatn lvgadlksvm ikvdgslpqd sngslnikik diksnsvlvs
      541 wkanskilks svrwtaflka ensqaaqsar ipsdikvynl thlnpsteyk icidiptiys
      601 qnkkqcvnvt tkgpdlamkg yemnniigfl vclgallgii sviylyicis remncdeghg
      661 ylknylkkqs fslnefyppl islwdmgkgk stamevkata igvptnms
//
LOCUS       XP_053944152             175 aa            linear   VRT 09-MAR-2023
DEFINITION  mitochondrial inner membrane protease subunit 2 [Cuculus canorus].
ACCESSION   XP_053944152
VERSION     XP_053944152.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088177.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..175
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..175
                     /product="mitochondrial inner membrane protease subunit 2"
                     /calculated_mol_wt=19565
     Region          36..146
                     /region_name="S26_SPase_I"
                     /note="The S26 Type I signal peptidase (SPase; LepB;
                     leader peptidase B; leader peptidase I; EC 3.4.21.89)
                     family members are essential membrane-bound serine
                     proteases that function to cleave the amino-terminal
                     signal peptide extension from proteins that are...;
                     cd06530"
                     /db_xref="CDD:119398"
     Site            order(43,91)
                     /site_type="active"
                     /note="Catalytic site [active]"
                     /db_xref="CDD:119398"
     CDS             1..175
                     /gene="IMMP2L"
                     /coded_by="XM_054088177.1:1869..2396"
                     /db_xref="GeneID:104062391"
ORIGIN      
        1 maqahslgkk yikaffkgff vavpvtvtfl drvaciarve gasmqpslnp ggrqasdvvl
       61 lnhwsirnyd vqrgdivslv sprnpeqkii krvialegdi iktigykkky vkiphghiwv
      121 egdhhghsfd snafgpvslg llharathil wppqrwqklq pvlpperkpl qseqe
//
LOCUS       XP_009566995             975 aa            linear   VRT 09-MAR-2023
DEFINITION  short transient receptor potential channel 4 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009566995
VERSION     XP_009566995.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568700.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566995.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..975
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..975
                     /product="short transient receptor potential channel 4
                     isoform X1"
                     /calculated_mol_wt=111656
     Region          17..749
                     /region_name="trp"
                     /note="transient-receptor-potential calcium channel
                     protein; TIGR00870"
                     /db_xref="CDD:273311"
     Region          122..167
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..975
                     /gene="TRPC4"
                     /coded_by="XM_009568700.2:545..3472"
                     /db_xref="GeneID:104066128"
ORIGIN      
        1 maqfyykrsv sapyrdripl rivraesels hsekaylnav ekgdyasvkk aleeaeiyfk
       61 inincidplg rtalliaien enlelielll sfnvyvgdal lhairkevvg avelllnhkk
      121 psgekqvppv lldkqfseft pditpiilaa htnnyeiikl lvqkgvsvpr phevrcncve
      181 cvsssdvdsl rhsrsrlniy kalaspslia lssedpflta fqlswelqel skvenefkse
      241 yeelsrqckq fakdlldqtr ssreleiiln yrddnsliee qsgndlarlk laikyrqkef
      301 vaqpncqqll asrwydefpg wrrrhwavkm ltcvvigllf pvfsvcylia pksplglfir
      361 kpfikficht asyltflfll llasqhidrs dlsmqgpppt ivewmilpwv lgfiwgeikq
      421 mwdgglqdyi hdwwnlmdfv mnslylatis lkivafskys glvpreswdm whptlvaeal
      481 faianifssl rlislftans hlgplqislg rmlldilkfl fiyclvllaf anglnqlyfy
      541 yetnepgnck gircekqnna fstlfetlqs lfwsifglin lyvtnvkarh eftefvgatm
      601 fgtynvislv vllnmliamm nnsyqliadh adiewkfart klwmsyfeeg gtlptpfnvi
      661 pspkslwyli kwlwrhlckk kirrkpesfg tigrraadnl rrhhqyqevm rnlvkryvaa
      721 mirdakteeg lteenfkelk qdissfrfev lgllkgskls nlqsaknnkd aaslseneen
      781 sesegnkkgk kknfslfdit tmihprsati aseahnvsng sammvsestk ekhkrvnfvt
      841 diknlglfhr rsktnsmeqc tnkiytvsee vsrqqaeeqc eetaeleege ltmncelniq
      901 speekcvlae sqnssdslds leersicasd tektelqnse pgtpqdqldk eldisidsdg
      961 keetidqgdy vitkl
//
LOCUS       XP_053944176             555 aa            linear   VRT 09-MAR-2023
DEFINITION  short transient receptor potential channel 4 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053944176
VERSION     XP_053944176.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088201.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..555
                     /product="short transient receptor potential channel 4
                     isoform X2"
                     /calculated_mol_wt=63427
     Region          <1..329
                     /region_name="TRPV"
                     /note="Transient Receptor Potential channel, Vanilloid
                     subfamily (TRPV); cl40437"
                     /db_xref="CDD:454755"
     CDS             1..555
                     /gene="TRPC4"
                     /coded_by="XM_054088201.1:165..1832"
                     /db_xref="GeneID:104066128"
ORIGIN      
        1 mwdgglqdyi hdwwnlmdfv mnslylatis lkivafskys glvpreswdm whptlvaeal
       61 faianifssl rlislftans hlgplqislg rmlldilkfl fiyclvllaf anglnqlyfy
      121 yetnepgnck gircekqnna fstlfetlqs lfwsifglin lyvtnvkarh eftefvgatm
      181 fgtynvislv vllnmliamm nnsyqliadh adiewkfart klwmsyfeeg gtlptpfnvi
      241 pspkslwyli kwlwrhlckk kirrkpesfg tigrraadnl rrhhqyqevm rnlvkryvaa
      301 mirdakteeg lteenfkelk qdissfrfev lgllkgskls nlqsaknnkd aaslseneen
      361 sesegnkkgk kknfslfdit tmihprsati aseahnvsng sammvsestk ekhkrvnfvt
      421 diknlglfhr rsktnsmeqc tnkiytvsee vsrqqaeeqc eetaeleege ltmncelniq
      481 speekcvlae sqnssdslds leersicasd tektelqnse pgtpqdqldk eldisidsdg
      541 keetidqgdy vitkl
//
LOCUS       XP_053944183             555 aa            linear   VRT 09-MAR-2023
DEFINITION  short transient receptor potential channel 4 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053944183
VERSION     XP_053944183.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088208.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..555
                     /product="short transient receptor potential channel 4
                     isoform X2"
                     /calculated_mol_wt=63427
     Region          <1..329
                     /region_name="TRPV"
                     /note="Transient Receptor Potential channel, Vanilloid
                     subfamily (TRPV); cl40437"
                     /db_xref="CDD:454755"
     CDS             1..555
                     /gene="TRPC4"
                     /coded_by="XM_054088208.1:849..2516"
                     /db_xref="GeneID:104066128"
ORIGIN      
        1 mwdgglqdyi hdwwnlmdfv mnslylatis lkivafskys glvpreswdm whptlvaeal
       61 faianifssl rlislftans hlgplqislg rmlldilkfl fiyclvllaf anglnqlyfy
      121 yetnepgnck gircekqnna fstlfetlqs lfwsifglin lyvtnvkarh eftefvgatm
      181 fgtynvislv vllnmliamm nnsyqliadh adiewkfart klwmsyfeeg gtlptpfnvi
      241 pspkslwyli kwlwrhlckk kirrkpesfg tigrraadnl rrhhqyqevm rnlvkryvaa
      301 mirdakteeg lteenfkelk qdissfrfev lgllkgskls nlqsaknnkd aaslseneen
      361 sesegnkkgk kknfslfdit tmihprsati aseahnvsng sammvsestk ekhkrvnfvt
      421 diknlglfhr rsktnsmeqc tnkiytvsee vsrqqaeeqc eetaeleege ltmncelniq
      481 speekcvlae sqnssdslds leersicasd tektelqnse pgtpqdqldk eldisidsdg
      541 keetidqgdy vitkl
//
LOCUS       XP_053944187             555 aa            linear   VRT 09-MAR-2023
DEFINITION  short transient receptor potential channel 4 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053944187
VERSION     XP_053944187.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088212.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..555
                     /product="short transient receptor potential channel 4
                     isoform X2"
                     /calculated_mol_wt=63427
     Region          <1..329
                     /region_name="TRPV"
                     /note="Transient Receptor Potential channel, Vanilloid
                     subfamily (TRPV); cl40437"
                     /db_xref="CDD:454755"
     CDS             1..555
                     /gene="TRPC4"
                     /coded_by="XM_054088212.1:405..2072"
                     /db_xref="GeneID:104066128"
ORIGIN      
        1 mwdgglqdyi hdwwnlmdfv mnslylatis lkivafskys glvpreswdm whptlvaeal
       61 faianifssl rlislftans hlgplqislg rmlldilkfl fiyclvllaf anglnqlyfy
      121 yetnepgnck gircekqnna fstlfetlqs lfwsifglin lyvtnvkarh eftefvgatm
      181 fgtynvislv vllnmliamm nnsyqliadh adiewkfart klwmsyfeeg gtlptpfnvi
      241 pspkslwyli kwlwrhlckk kirrkpesfg tigrraadnl rrhhqyqevm rnlvkryvaa
      301 mirdakteeg lteenfkelk qdissfrfev lgllkgskls nlqsaknnkd aaslseneen
      361 sesegnkkgk kknfslfdit tmihprsati aseahnvsng sammvsestk ekhkrvnfvt
      421 diknlglfhr rsktnsmeqc tnkiytvsee vsrqqaeeqc eetaeleege ltmncelniq
      481 speekcvlae sqnssdslds leersicasd tektelqnse pgtpqdqldk eldisidsdg
      541 keetidqgdy vitkl
//
LOCUS       XP_053944195             555 aa            linear   VRT 09-MAR-2023
DEFINITION  short transient receptor potential channel 4 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053944195
VERSION     XP_053944195.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088220.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..555
                     /product="short transient receptor potential channel 4
                     isoform X2"
                     /calculated_mol_wt=63427
     Region          <1..329
                     /region_name="TRPV"
                     /note="Transient Receptor Potential channel, Vanilloid
                     subfamily (TRPV); cl40437"
                     /db_xref="CDD:454755"
     CDS             1..555
                     /gene="TRPC4"
                     /coded_by="XM_054088220.1:205..1872"
                     /db_xref="GeneID:104066128"
ORIGIN      
        1 mwdgglqdyi hdwwnlmdfv mnslylatis lkivafskys glvpreswdm whptlvaeal
       61 faianifssl rlislftans hlgplqislg rmlldilkfl fiyclvllaf anglnqlyfy
      121 yetnepgnck gircekqnna fstlfetlqs lfwsifglin lyvtnvkarh eftefvgatm
      181 fgtynvislv vllnmliamm nnsyqliadh adiewkfart klwmsyfeeg gtlptpfnvi
      241 pspkslwyli kwlwrhlckk kirrkpesfg tigrraadnl rrhhqyqevm rnlvkryvaa
      301 mirdakteeg lteenfkelk qdissfrfev lgllkgskls nlqsaknnkd aaslseneen
      361 sesegnkkgk kknfslfdit tmihprsati aseahnvsng sammvsestk ekhkrvnfvt
      421 diknlglfhr rsktnsmeqc tnkiytvsee vsrqqaeeqc eetaeleege ltmncelniq
      481 speekcvlae sqnssdslds leersicasd tektelqnse pgtpqdqldk eldisidsdg
      541 keetidqgdy vitkl
//
LOCUS       XP_053944206            3414 aa            linear   VRT 09-MAR-2023
DEFINITION  breast cancer type 2 susceptibility protein isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053944206
VERSION     XP_053944206.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088231.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3414
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3414
                     /product="breast cancer type 2 susceptibility protein
                     isoform X1"
                     /calculated_mol_wt=380665
     Region          978..1005
                     /region_name="BRCA2"
                     /note="BRCA2 repeat; pfam00634"
                     /db_xref="CDD:459881"
     Region          1226..1253
                     /region_name="BRCA2"
                     /note="BRCA2 repeat; pfam00634"
                     /db_xref="CDD:459881"
     Region          1527..1553
                     /region_name="BRCA2"
                     /note="BRCA2 repeat; pfam00634"
                     /db_xref="CDD:459881"
     Region          1828..1852
                     /region_name="BRCA2"
                     /note="BRCA2 repeat; pfam00634"
                     /db_xref="CDD:459881"
     Region          1967..1993
                     /region_name="BRCA2"
                     /note="BRCA2 repeat; pfam00634"
                     /db_xref="CDD:459881"
     Region          2045..2073
                     /region_name="BRCA2"
                     /note="BRCA2 repeat; pfam00634"
                     /db_xref="CDD:459881"
     Region          2459..2645
                     /region_name="BRCA-2_helical"
                     /note="BRCA2, helical; pfam09169"
                     /db_xref="CDD:462700"
     Region          2648..2773
                     /region_name="BRCA-2_OB1"
                     /note="BRCA2, oligonucleotide/oligosaccharide-binding,
                     domain 1; pfam09103"
                     /db_xref="CDD:462678"
     Region          2781..3032
                     /region_name="BRCA2DBD_OB2"
                     /note="A subfamily of OB folds corresponding to the second
                     OB fold (OB2) of the 800-amino acid C-terminal ssDNA
                     binding domain (DBD) of BRCA2 (breast cancer
                     susceptibility gene 2) protein, called BRCA2DBD. BRCA2
                     participates in homologous recombination-mediated...;
                     cd04494"
                     /db_xref="CDD:239940"
     Site            order(2785..2786,2788..2791,2793)
                     /site_type="active"
                     /note="binding surface II [active]"
                     /db_xref="CDD:239940"
     Site            order(2803..2804,2806,2818,2823,2951,3029,3031..3032)
                     /site_type="other"
                     /note="OB2/OB3 interface [polypeptide binding]"
                     /db_xref="CDD:239940"
     Site            order(2818,2949,2967,2969..2970,3005,3007)
                     /site_type="other"
                     /note="ssDNA binding site [nucleotide binding]"
                     /db_xref="CDD:239940"
     Region          3031..3168
                     /region_name="BRCA-2_OB3"
                     /note="BRCA2, oligonucleotide/oligosaccharide-binding,
                     domain 3; pfam09104"
                     /db_xref="CDD:462679"
     CDS             1..3414
                     /gene="BRCA2"
                     /coded_by="XM_054088231.1:88..10332"
                     /db_xref="GeneID:104064239"
ORIGIN      
        1 mekkmackpv krptffeifk ahcsesdlgp islnwfeels aeapshepkf lgeldgtidw
       61 pdqtfktpra kpsaytqlas tprifkeenm ilplysspgk esdqkkkasr ensmspsitr
      121 rkinqgneil asppgtyhnc laaspailrn tcktpqrsni lgpygslfrt pklleagtpk
      181 riseslgaev dpdmswsssl atpptlgatv iiagendsis gaklqderae ivlhnfyssh
      241 dkcpgrsdts mlslpeiekl naeddikdfe semldgffdg mnsfedtfsm paksdgtlll
      301 vphpveavek cevnsekaeg kkddpsgqpi grktgisqea ettswteknh ciemkdsllq
      361 ntdegtgdgk dgcfvghkke leslriagdv qdyrtdrsse nekplkedvp sssgqwsqln
      421 lssldvtrle vsicssppsd lsreknleek svlkikddav etsllnssdl akaqkllnvs
      481 wsekccevkn pqnnpasekt plksvslsfq dpkfikgcaa evpemsflnc nsfliestnv
      541 teysvvyngs fskhikatsk svvtdvlsht lvcnatspdn cndlhltnsa ntltkpgfks
      601 lnmlsslrkr skrfiytinn tllyqeekiq kevtsqfpvh pvlshsesdl cefkdchvas
      661 vdeqgcllla erkhlpstik gnnfssctsk mdimdnssdn tfnnrlkqed lrvlrenare
      721 dqpatslkcl evsnmqkedt tdslnseiis nikhkvltsa hlmarkhsrl lpegccleeg
      781 keekyistde nnvstvpqkl relvwssskd nehlvdmhdd ttsvinggfn stlgqinfgi
      841 ngvssdccnm itnkrhatde qsvvdcrevl rplgtnclen ystrlkqgek tafsevvakn
      901 eelksiknte spqaaafnnv eiakewlhcv gdkslnevis eedkqvapmy sseeanenlk
      961 ykgkssgnlt acslnlgfgg fqtasnkqik fsevslakgk mlfkdienec feassvervr
     1021 nfsdrvrken tffsdseskl srnladsldm qtslleprht rsiphkvdlc ksfprsqqsl
     1081 qetnqtltas qeaeiaelss ileetgsqfe ftqfrkqsni vqsqvfrqfr tvethgttnv
     1141 enisetrnda dfcsdlkcen qvkndryctk kedtiedskv veyekentvi fhkndkkvtf
     1201 anldrnesrv shgsfpgatq drfsgfvgft saggkkinis kealarstel fkdldddnyl
     1261 fksqtstrch isnshissnc gfvgcltten kgkpiftsdf kstgaisrtg sishhtqrkd
     1321 evnnlsfred menqikrsin dngnvhfnsi dtvfnslsfi kkhnqhhrts iqffnkgdce
     1381 vegtlqedpl dvtclggait taehslslsd emedlsanqk gedrkenecl sqelqtpagg
     1441 disvsdaald hslrllgvqc gegdinvlen sdkqkinhnn meedttrden llvnecrkqi
     1501 csyhhhqihs kqelvvgkke ekgsyltgfq tasgkkitva dglmakaeqf fsenvdagke
     1561 hndnfgnpvk kkkfvkssvk dsdscienia qcdpeelhfn rklveergdq fqqtvksspi
     1621 khtlildsve vdtfvnlgdd verslvtsya hkkadvrpgk selesfsrqe sndlskacls
     1681 edaecfaere mqyslsqtkd elenmhdfpv hsatslhllk vsndlednsv pgdakntlfv
     1741 edgnnksnqs liltskssss lncdtkdfvl ehltepcadt ncftdtivna cqnrslaglp
     1801 edetdlttlk etalnvenkn ddmkkivfst akgkavsvse salarvrqmf qddygeavkg
     1861 eieansrtnq teiagnsspi ihaespkctk dliaarseei nsatshfikv nasagenghq
     1921 gantfvdaks vpnsergcfd knikllehlp vpekqikqsd csvsnlgffs tasgkpvqls
     1981 eeslrkarql fseiesdnss qvqeaflaee vaeksemhtq ivpgkiqtal argeentste
     2041 fisdpafgfs tasgkqvkvs knayekakai lkepddffss glcitdqlss ieesgqhvks
     2101 ltdkvisesk idkscnedfn lksicpeemk sfpsthhikm peyiphskkn kqltsfknsf
     2161 qqeesrsfek gqlnlgvkte seaipcvaaa kaeininllq tpksylevea vesarafmed
     2221 dlsdsgvein aaqsfsdrld rnfqsktfgk rrleeknscg eppikrqlll efnrtktfpr
     2281 slkaskttpd giskdrrkfm yhvplkpvtc qpfgdtkerq evknptltlp dqdlkgfksk
     2341 paifqhctlr qsssstseas tpskasakes eepkslyksg ktvksfvppf ktkqtfsege
     2401 qgsskrcdsp isknvteete lnqitaeent aepqdhqsci qhaadsdlen gnlamvkmmt
     2461 nlrcardlqe mrikkkyrqn issqpgslyl iktsarnris lktaveeksp sfysmeelyt
     2521 ygvsahcvhv nstnaesfef likdffskey llagngmqla dggwliptde gkagkkefyr
     2581 alcdtpgvdp kliteawvyn hyrwiiwkla amevsfpdkf anrcltpetv llqlkyrydl
     2641 evdkskrsai kkiterddaa gktlvlcisk iislntvvsp sssnknvest kataiievtd
     2701 gwygiralld pplkaflhrr rltvgqkiiv qgaelvgpqn gctpleapds lmlkisanst
     2761 rcarwhaklg fhrdprpfpl plsslysegg avgcidvviq rtypiqwvek taagsyvfrn
     2821 sraeereaak haedqqkkle tlfakiqaey ekreertsrr tsrsrivtrq qihslqdgae
     2881 lyeaiqnasd pgymegylse dqlkalnayr qlmndrkqtq iqeefkkale saeqeengcs
     2941 krdvstvwkl cvvdykkqek ckgvilsiwr plvdvcsllk egsryriyql ctsqskrrsd
     3001 stniqltatk ktqylqlpvs qemliqifsp rkvlkftsls dpsfrppcae vdlvgvvvsi
     3061 srtgfttlvy ladesynlva vkiwtdlkhs aiedivvrcs ffsasnlqwk sefrseipil
     3121 lagdlsvfsa spkedylqek lnelrstien vasfcsdaes klrnllqrnv slpaslskrc
     3181 glecpspscn salyaedksl isspkieikh psplststpn mklvaqgsak tpsssatise
     3241 dhiknskkrk amdflscipa pppltpicsv ispslkkafq pprslglqrs kspketnqni
     3301 gyitpcrklr etvrlpendl vadeelamin tqalinnipe erkigyvnen rctmatnlsd
     3361 dlspknssrs tgeassssks ssevgetlqk dtqeperllp ahrmlrrqkp qkdy
//
LOCUS       XP_053944213            3114 aa            linear   VRT 09-MAR-2023
DEFINITION  breast cancer type 2 susceptibility protein isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053944213
VERSION     XP_053944213.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088238.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3114
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3114
                     /product="breast cancer type 2 susceptibility protein
                     isoform X2"
                     /calculated_mol_wt=347465
     Region          678..705
                     /region_name="BRCA2"
                     /note="BRCA2 repeat; pfam00634"
                     /db_xref="CDD:459881"
     Region          926..953
                     /region_name="BRCA2"
                     /note="BRCA2 repeat; pfam00634"
                     /db_xref="CDD:459881"
     Region          1227..1253
                     /region_name="BRCA2"
                     /note="BRCA2 repeat; pfam00634"
                     /db_xref="CDD:459881"
     Region          1528..1552
                     /region_name="BRCA2"
                     /note="BRCA2 repeat; pfam00634"
                     /db_xref="CDD:459881"
     Region          1667..1693
                     /region_name="BRCA2"
                     /note="BRCA2 repeat; pfam00634"
                     /db_xref="CDD:459881"
     Region          1745..1773
                     /region_name="BRCA2"
                     /note="BRCA2 repeat; pfam00634"
                     /db_xref="CDD:459881"
     Region          2159..2345
                     /region_name="BRCA-2_helical"
                     /note="BRCA2, helical; pfam09169"
                     /db_xref="CDD:462700"
     Region          2348..2473
                     /region_name="BRCA-2_OB1"
                     /note="BRCA2, oligonucleotide/oligosaccharide-binding,
                     domain 1; pfam09103"
                     /db_xref="CDD:462678"
     Region          2481..2732
                     /region_name="BRCA2DBD_OB2"
                     /note="A subfamily of OB folds corresponding to the second
                     OB fold (OB2) of the 800-amino acid C-terminal ssDNA
                     binding domain (DBD) of BRCA2 (breast cancer
                     susceptibility gene 2) protein, called BRCA2DBD. BRCA2
                     participates in homologous recombination-mediated...;
                     cd04494"
                     /db_xref="CDD:239940"
     Site            order(2485..2486,2488..2491,2493)
                     /site_type="active"
                     /note="binding surface II [active]"
                     /db_xref="CDD:239940"
     Site            order(2503..2504,2506,2518,2523,2651,2729,2731..2732)
                     /site_type="other"
                     /note="OB2/OB3 interface [polypeptide binding]"
                     /db_xref="CDD:239940"
     Site            order(2518,2649,2667,2669..2670,2705,2707)
                     /site_type="other"
                     /note="ssDNA binding site [nucleotide binding]"
                     /db_xref="CDD:239940"
     Region          2731..2868
                     /region_name="BRCA-2_OB3"
                     /note="BRCA2, oligonucleotide/oligosaccharide-binding,
                     domain 3; pfam09104"
                     /db_xref="CDD:462679"
     CDS             1..3114
                     /gene="BRCA2"
                     /coded_by="XM_054088238.1:88..9432"
                     /db_xref="GeneID:104064239"
ORIGIN      
        1 mekkmackpv krptffeifk ahcsesdlgp islnwfeels aeapshepkf lgeldgtidw
       61 pdqtfktpra kpsaytqlas tprifkeenm ilplysspgk esdqkkkasr ensmspsitr
      121 rkinqgneil asppgtyhnc laaspailrn tcktpqrsni lgpygslfrt pklleagtpk
      181 riseslgaev dpdmswsssl atpptlgatv iiagendsis gaklqderae ivlhnfyssh
      241 dkcpgrsdts mlslpeiekl naeddikdfe semldgffdg mnsfedtfsm paksdgtlll
      301 vphpveavek cevnsekaeg kkddpsgqpi grktgisqea ettswteknh ciemkdsllq
      361 ntdegcllla erkhlpstik gnnfssctsk mdimdnssdn tfnnrlkqed lrvlrenare
      421 dqpatslkcl evsnmqkedt tdslnseiis nikhkvltsa hlmarkhsrl lpegccleeg
      481 keekyistde nnvstvpqkl relvwssskd nehlvdmhdd ttsvinggfn stlgqinfgi
      541 ngvssdccnm itnkrhatde qsvvdcrevl rplgtnclen ystrlkqgek tafsevvakn
      601 eelksiknte spqaaafnnv eiakewlhcv gdkslnevis eedkqvapmy sseeanenlk
      661 ykgkssgnlt acslnlgfgg fqtasnkqik fsevslakgk mlfkdienec feassvervr
      721 nfsdrvrken tffsdseskl srnladsldm qtslleprht rsiphkvdlc ksfprsqqsl
      781 qetnqtltas qeaeiaelss ileetgsqfe ftqfrkqsni vqsqvfrqfr tvethgttnv
      841 enisetrnda dfcsdlkcen qvkndryctk kedtiedskv veyekentvi fhkndkkvtf
      901 anldrnesrv shgsfpgatq drfsgfvgft saggkkinis kealarstel fkdldddnyl
      961 fksqtstrch isnshissnc gfvgcltten kgkpiftsdf kstgaisrtg sishhtqrkd
     1021 evnnlsfred menqikrsin dngnvhfnsi dtvfnslsfi kkhnqhhrts iqffnkgdce
     1081 vegtlqedpl dvtclggait taehslslsd emedlsanqk gedrkenecl sqelqtpagg
     1141 disvsdaald hslrllgvqc gegdinvlen sdkqkinhnn meedttrden llvnecrkqi
     1201 csyhhhqihs kqelvvgkke ekgsyltgfq tasgkkitva dglmakaeqf fsenvdagke
     1261 hndnfgnpvk kkkfvkssvk dsdscienia qcdpeelhfn rklveergdq fqqtvksspi
     1321 khtlildsve vdtfvnlgdd verslvtsya hkkadvrpgk selesfsrqe sndlskacls
     1381 edaecfaere mqyslsqtkd elenmhdfpv hsatslhllk vsndlednsv pgdakntlfv
     1441 edgnnksnqs liltskssss lncdtkdfvl ehltepcadt ncftdtivna cqnrslaglp
     1501 edetdlttlk etalnvenkn ddmkkivfst akgkavsvse salarvrqmf qddygeavkg
     1561 eieansrtnq teiagnsspi ihaespkctk dliaarseei nsatshfikv nasagenghq
     1621 gantfvdaks vpnsergcfd knikllehlp vpekqikqsd csvsnlgffs tasgkpvqls
     1681 eeslrkarql fseiesdnss qvqeaflaee vaeksemhtq ivpgkiqtal argeentste
     1741 fisdpafgfs tasgkqvkvs knayekakai lkepddffss glcitdqlss ieesgqhvks
     1801 ltdkvisesk idkscnedfn lksicpeemk sfpsthhikm peyiphskkn kqltsfknsf
     1861 qqeesrsfek gqlnlgvkte seaipcvaaa kaeininllq tpksylevea vesarafmed
     1921 dlsdsgvein aaqsfsdrld rnfqsktfgk rrleeknscg eppikrqlll efnrtktfpr
     1981 slkaskttpd giskdrrkfm yhvplkpvtc qpfgdtkerq evknptltlp dqdlkgfksk
     2041 paifqhctlr qsssstseas tpskasakes eepkslyksg ktvksfvppf ktkqtfsege
     2101 qgsskrcdsp isknvteete lnqitaeent aepqdhqsci qhaadsdlen gnlamvkmmt
     2161 nlrcardlqe mrikkkyrqn issqpgslyl iktsarnris lktaveeksp sfysmeelyt
     2221 ygvsahcvhv nstnaesfef likdffskey llagngmqla dggwliptde gkagkkefyr
     2281 alcdtpgvdp kliteawvyn hyrwiiwkla amevsfpdkf anrcltpetv llqlkyrydl
     2341 evdkskrsai kkiterddaa gktlvlcisk iislntvvsp sssnknvest kataiievtd
     2401 gwygiralld pplkaflhrr rltvgqkiiv qgaelvgpqn gctpleapds lmlkisanst
     2461 rcarwhaklg fhrdprpfpl plsslysegg avgcidvviq rtypiqwvek taagsyvfrn
     2521 sraeereaak haedqqkkle tlfakiqaey ekreertsrr tsrsrivtrq qihslqdgae
     2581 lyeaiqnasd pgymegylse dqlkalnayr qlmndrkqtq iqeefkkale saeqeengcs
     2641 krdvstvwkl cvvdykkqek ckgvilsiwr plvdvcsllk egsryriyql ctsqskrrsd
     2701 stniqltatk ktqylqlpvs qemliqifsp rkvlkftsls dpsfrppcae vdlvgvvvsi
     2761 srtgfttlvy ladesynlva vkiwtdlkhs aiedivvrcs ffsasnlqwk sefrseipil
     2821 lagdlsvfsa spkedylqek lnelrstien vasfcsdaes klrnllqrnv slpaslskrc
     2881 glecpspscn salyaedksl isspkieikh psplststpn mklvaqgsak tpsssatise
     2941 dhiknskkrk amdflscipa pppltpicsv ispslkkafq pprslglqrs kspketnqni
     3001 gyitpcrklr etvrlpendl vadeelamin tqalinnipe erkigyvnen rctmatnlsd
     3061 dlspknssrs tgeassssks ssevgetlqk dtqeperllp ahrmlrrqkp qkdy
//
LOCUS       XP_053944221             740 aa            linear   VRT 09-MAR-2023
DEFINITION  protein O-mannosyl-transferase TMTC4 [Cuculus canorus].
ACCESSION   XP_053944221
VERSION     XP_053944221.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088246.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..740
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..740
                     /product="protein O-mannosyl-transferase TMTC4"
                     /calculated_mol_wt=83532
     Region          290..364
                     /region_name="TMTC_DUF1736"
                     /note="Protein O-mannosyl-transferase TMTC, DUF1736;
                     pfam08409"
                     /db_xref="CDD:462468"
     Region          466..546
                     /region_name="PilF"
                     /note="Type IV pilus assembly protein PilF/PilW [Cell
                     motility, Extracellular structures]; COG3063"
                     /db_xref="CDD:442297"
     Region          480..508
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(481,484..485,488..489,491,515,518..519,522..523,
                     525..526,549,552..553,556..557,560)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          507..736
                     /region_name="TPR"
                     /note="Tetratricopeptide (TPR) repeat [General function
                     prediction only]; COG0457"
                     /db_xref="CDD:440225"
     Region          513..543
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          548..576
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          582..608
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          618..644
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(620..621,624..625,627,651,654..655,658..659,
                     661..662,685,688..689,692..693,696)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          649..679
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          684..712
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..740
                     /gene="TMTC4"
                     /coded_by="XM_054088246.1:172..2394"
                     /db_xref="GeneID:104060252"
ORIGIN      
        1 maqtepnldh dvswfllpsy wskmvvalis flcfansydg dfvfddseai innkdlraet
       61 plgdlwhhdf wgsklssnts hksyrpltvl tfrinylfag gfypvgfhvi niilhctisv
      121 lmvdvfsill gglqfsnkgr rlnlapktsl laallfavhp vhtecvagiv gradllcalf
      181 fllsflgyck afrenkeghn fsifwvlvsv ilgavamlck eqgitilgln avfdalvink
      241 lnilelvqkl lhkdkslens gllrkgllfr itllmsggat ilyirwrimg tgppaftevd
      301 npasfadslf vrainynyyy slnawlllcp wwlcfdwsmg cipliksvsd wriialaalw
      361 fcliglicqa lcsedshkrr iltlglgfli ipflpasnlf frvgfviaer viylpsigyc
      421 ilftygfsll skqakkkkil avavlgilli nvmrcvlrss qwrseeqlfr salsvcplna
      481 kvhynvgknl adkgnqsaai kyyreavrln pkyvhamnnl gnilkernel qeaeellsla
      541 vqiqpdfaaa wmnlgivqns lrrfeeaeqs ywtaikhrkk ypdcyynlgr lyadlnrhid
      601 alnawrnatv lkpehslawn nmiilldntg nlaqaeavgr ealelipndh slmfslanvl
      661 gksqkykese alflkaikan pnaasyhgnl avlyhrwgnl dlakkhyels lkldpmapgt
      721 kenynllrrk leqlqkksga
//
LOCUS       XP_053944235             358 aa            linear   VRT 09-MAR-2023
DEFINITION  diacylglycerol O-acyltransferase 2 [Cuculus canorus].
ACCESSION   XP_053944235
VERSION     XP_053944235.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088260.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..358
                     /product="diacylglycerol O-acyltransferase 2"
                     /calculated_mol_wt=40299
     Region          62..358
                     /region_name="DAGAT"
                     /note="Diacylglycerol acyltransferase; pfam03982"
                     /db_xref="CDD:112781"
     Site            order(133,136,159..162,210..212)
                     /site_type="active"
                     /note="putative acyl-acceptor binding pocket [active]"
                     /db_xref="CDD:153249"
     CDS             1..358
                     /gene="DGAT2"
                     /coded_by="XM_054088260.1:105..1181"
                     /db_xref="GeneID:104064126"
ORIGIN      
        1 mktiiaaysg vlrgtgssil salqdlfwls kskvekqlqi isvlqwvltf lvmgvactli
       61 lmyilctdcw liaalylawl ifdwntpkkg grrsqwvrnw aiwryfrdyf pirlvkthnl
      121 lttrnyifgy hphgimglga fcnfsteatg vgqkfpgirp ylatlagnfr mpilrdylms
      181 ggicpvnrds idyilskngs gnaiiivvgg aaeslnctpg knsvtlrnrk gfvklalrhg
      241 adlvpvysfg enevykqvif eegswgrwvq kkfqkhigfa pcifhgrglf ssntwgllpy
      301 skpittvvge pitipkidnp sqkevdfyhg iyvdsliklf dkykskfglp etevlevn
//
LOCUS       XP_053944246            4589 aa            linear   VRT 09-MAR-2023
DEFINITION  protocadherin Fat 3 [Cuculus canorus].
ACCESSION   XP_053944246
VERSION     XP_053944246.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088271.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4589
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..4589
                     /product="protocadherin Fat 3"
                     /calculated_mol_wt=506025
     Region          47..153
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(54..55,118,120,150,152..153)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          162..262
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(169..170,220,222,258,260..261)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          289..364
                     /region_name="CA_like"
                     /note="Cadherin repeat-like domain; cl46864"
                     /db_xref="CDD:481204"
     Region          381..469
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(387..388,436,438,465,467..468)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          477..575
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(484..485,536,538,571,573..574)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          588..>659
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          734..828
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(738..739,791,793,824,826..827)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          836..932
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(843..844,894,896,929,931..932)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          941..1019
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          1052..1145
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1055..1056,1108,1110,1141,1143..1144)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1153..1251
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1160..1161,1214,1216,1247,1249..1250)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1259..1349
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          1368..1457
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1374..1375,1423,1425,1453,1455..1456)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1465..1563
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1472..1473,1526,1528,1559,1561..1562)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1572..1663
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          1676..1766
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1683..1684,1731,1733,1762,1764..1765)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1774..1880
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1781..1782,1841,1843,1876,1878..1879)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          1899..1978
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          1988..2081
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(1994..1995,2044,2046,2077,2079..2080)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2089..2180
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          2192..2284
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2198..2199,2248,2250,2280,2282..2283)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2293..2391
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2299..2300,2354,2356,2387,2389..2390)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2399..2491
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2406..2407,2459,2461,2489,2491)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2501..2597
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2508..2509,2560,2562,2593,2595..2596)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2605..2700
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          2713..2811
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2720..2721,2773,2775,2807,2809..2810)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2819..2921
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2826..2827,2883,2885,2917,2919..2920)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          2930..3026
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(2936..2937,2992,2994,3022,3024..3025)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          3035..3128
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(3041..3042,3093,3095,3124,3126..3127)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          3136..3233
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(3143..3144,3195,3197,3229,3231..3232)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          3242..3338
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(3248..3249,3301,3303,3334,3336..3337)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          3346..3443
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(3353..3354,3406,3408,3439,3441..3442)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          3452..3543
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          3562..3639
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          3866..3995
                     /region_name="Laminin_G_2"
                     /note="Laminin G domain; pfam02210"
                     /db_xref="CDD:460494"
     Region          4024..4059
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; cd00054"
                     /db_xref="CDD:238011"
     Region          4065..4093
                     /region_name="EGF"
                     /note="EGF-like domain; pfam00008"
                     /db_xref="CDD:394967"
     Region          <4111..4134
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; cd00054"
                     /db_xref="CDD:238011"
     CDS             1..4589
                     /gene="FAT3"
                     /coded_by="XM_054088271.1:153..13922"
                     /db_xref="GeneID:104064095"
ORIGIN      
        1 mevnmgrwsg srpplsclal livkflasvc qvvhgtaplg fqfthstyna tvyensaart
       61 yvnsqtrmgi tladlswdik yrivsgddeg ffkaeeviia dfcflrirtk ggnsailnre
      121 iqdnyllmvk gsvrgedmea wtkvniqvld mndlrplfsp ttysvtiaes tplrtsiaqv
      181 tatdadigsn gefyyyfksk vdlfsvhpts gvislsgrln ydeknrydle ilavdrgmkl
      241 ygnngvssta klyvhierin ehaptisvvt hipfpsdkep tyavvsiddl degangeies
      301 vsivagdple qffltkegkw mneykikerk pidwdsfpyg ynltlqakdk gspqkfsavk
      361 lvhiaspkke nipmkfekea ydvsisefsp pnvvvavvkl mpepqgveyr ispsedaecf
      421 kinpntglit tarplkivek dlyelevytn kggdlkaqvt vrledandht pefqqpsyss
      481 finesvpvgs tvlavsaidk drgengyity siaslnslpf tinqftgvis tseeldfess
      541 pesyrfivra sdwgspyrhe sevnvtiyig nvndnkplfe kvacqgviss dfpvgghita
      601 vsaididele lvkykiisgn elgifylnpd sgvlqlkksl vnsgiknsif glkitatdge
      661 nfadamfvni svvhgkvssk tfscretrva qklaekllkk akanvklnle dgfldfysvn
      721 rqaphfdksf ptdvkvsedl pvgatilrik aydadsgfng rvvytisdgn vdscfnidme
      781 tgvlnvlmpl drektelyll nitiydlgnp qksawrlltv tvedandnvp vflqdsysvn
      841 ilestslgte iiqveardkd lgsngevtys vltdtqqfai nsstgmvyva dqldreskan
      901 ytlkieardk aesghqqfav mplkvflddv ndcspafips synvkvledl pvgtviawle
      961 thdpdlglgg qvryslvndy ngrfeidkas gairlnkeld yekqqfynlt vrakdkgrpv
     1021 slssvsfvev evvdvnenly tpyfpdfavi gsvkensrig tsvlqviard edsgrdgeiq
     1081 ysirdgtglg rfsideetgv iytadildre ttksywltvy atdhgvvply ttievyieve
     1141 dvndnaplts epiyypavme nspkdvsviq iqaqdpdsst nekltyrits gnpqnffvin
     1201 pktglittts rkldreqqae hflevtvsdg gtspkqssvw vvvqvldend nkpqfpekvy
     1261 qiklperdrk krgepiyraf afdkdegpna eisysivdgn ddgkffidpk tgmvssrkqf
     1321 tagsydilti kavdngrpqk satarlhiew ikkpapspvp ltfdepfynf tvmesdkvte
     1381 ivgvvsvqps niplwfdivg gnydssfdae kgvgtiviak pldaeqrsiy nmtvevtdgt
     1441 niattqvlik vldnndngpe fsqasydvti sedippdtei lqieaidrde khklsytihs
     1501 sidtvsmkkf ridpstgvly taerldheaq dkhilnvmvr dqefpyrrnl ariiiiveds
     1561 ndhspyftsp lyeasvfesa avgsavlqvt aldkdkgena eliytieagn tgntfkiepv
     1621 lgiitllkep dlttmgqfvl svkvtdqgsp plsataivri svtmadnshp kftlkeyqae
     1681 vnenvdigts vlslsaisqs tlvyevkdgn vdgvftinpy sgvitsqktl dyerassyql
     1741 tvqatnmagm asnatvniqi vdendnppvf lfsqysgsis eaapvnsivr stnnsplvir
     1801 atdadsnqna llvyqivest akkyftvdss tgairtianl dhetiahfhf hvhvrdsgnp
     1861 qltaespvev tievtdvndn ppvfsqaife tvlllptyvg vevlkvkatd pdseippelt
     1921 ysliegnmdh flidsstgvl tiknnslskd hymlivrvsd gkfystamvt iivkeamdsg
     1981 lhftqnfyst sisenstnit kiavvnavgn rlneplkysi lnpgtkfkik stsgviqttg
     2041 ipfdreeqel yelvveasre ldhlrvarvv vrvyiedind napvfiglpy yaavqvdaep
     2101 gtliyrvtai dkdkdengev syllkedygh feidresgsv tlkeafnsdl snieylvviv
     2161 akdggnpsls alvelpitiv nkampvfdrp fytasvnedv ekhtpilsin atspegqgii
     2221 yiivdgdpyn qfnidfdtgv lsvispldye vnslfklmvr asdaltgara evtvdlivnd
     2281 vndnppvfdq saynatlsea sligtpvlqv vatdadsdnn rivqyqivqd tfnstdyfhi
     2341 dstsglilta rmldheliqq cslkvratdn gfpplssevl vsisitdmnd nppvfnqliy
     2401 esyvselapr ghfvtcvqas dadssdfdrl eysilsgndr tsfimdsksg vitlsnhrkq
     2461 rmepmyslnv svsdglftst aqvhiqilga nlyspvfsqs vyvaevrena apgtkvihvk
     2521 atdgdsgvyg qisysiindf akdrflidnn gqiltaerld renplesdig iflraldggg
     2581 rttfctvrvi vvdendnapq fmtveyrasv kadvgkgylv tqvqavdpdd gansritysl
     2641 yseasvsvad lleidpdngw mvtkgsfnql kntvlsffvk avdggipvkh slipvyihvl
     2701 ppetilpsfs qpqysftiae dtvigstidi lhvlpnqgal ystvngelae nnkdgvfiie
     2761 qdtglikldk rldheinpaf hfkvaatiql dkvdivltvd vevkvldvnd nkpmfetaty
     2821 daiimegmpi gtklmqvkav dadssangqv tytlavesel ekiteaftid sntgwistlk
     2881 dldhekestf tfavvasdlg etlslssttl isvtvtdind napifehely rgsvkesdpp
     2941 gevvavlstw dedtsdvnrq vsyhitggnp kgkfalglvq newkvyvkrp ldreeqdiyy
     3001 lnitatdglf vtqaavevtv tdvndnspvc eqvaytalfp edissnkvil kigakdadig
     3061 sngeirysly gagnnkffld pengelksla pldrekipay nlvaratdgg grfcqseihl
     3121 iledvndnpp vfssdhytac vyentatkal ltrvqatdpd vgvnrkvtys ltdsadgyfs
     3181 vdrssgiiil ehpldrelqs synisvkasd qsivltlssf atvtitvldi ndnppvferr
     3241 dylvtvpedt spgtevlsvf atsqdigtna eitylirsgn ekgkfrinsk tgaisifeal
     3301 dyesckdfyl vveakdggtp alsavttvnv nvtdvndnap kfsqvvysav isedaaigds
     3361 vimliaedld spsngqihfs ivngdrdnef svdpllglvk vkkkldreri sgyslviqar
     3421 dsgtpplsss vtvnvdisdv ndnspvftpa nytaviqenk pvgtsilqlv vtdkdsfhng
     3481 ppftftiltg neeeeftldp hgvlrsavif khmvateyvl cvqakdsgkp qqvshtyiqv
     3541 rvieesihkp taipleifiv tmeddfpggv igkihatdqd vydvltytlk seqkslfkvn
     3601 shdgkiialg gldngkyvln vsvsdgrfqv pidvvvhveq llqemlqntv tirfenvspe
     3661 dfvglhmhgf rrtlrnavls qkqdslhiis iqpvagsnql dmlfavqmhn sgfykptyli
     3721 qkltnarrhl envirisail ekncsgldcq eqhceqslsi dshslmtyst arisfvcprf
     3781 yrnvrcmcng glcpgsndpc lekpcpgdmq cvgyeanrrp ficqcppgkl gecsghtsls
     3841 fagnsyikyr vsenskkeef klalrlrtlq sngiimytra npciilkivd gklwfqldcg
     3901 sgpgilgisg ravndgswhs vflelnrnft slslddsyve rrkaplyfqt lstdssiyfg
     3961 aqvqvdnvrs ltdkrttqvl sgfqgcldsv vlnnnelplq nkrssfaevv gltelklgcv
     4021 lypdacerhp cqnggscisv psggyqcncl sqftgrnces eitacfpnpc rnggscdpig
     4081 naficnckng ltgvtceedi necereecen ggscvnifgs flcnctpgyv gqycglrpvv
     4141 vpniqaghsy vgkeeligia vvlfvifvli vlfiifrkkv frknysrnni tlvqdpataa
     4201 llnksngiqf knirnsgdtr niyqevgppq vpvrpmaytp cfqsdsrnnl dkivdglgve
     4261 hqemttfhpe spriltarrg vvvcsvapnl pavspcrsdc dsirkstwda gteskgvdda
     4321 eevtcfagsn kgsnsevqsl ssfqsdsgdd nasivtviql vnnvvdtien evsvmdqgqn
     4381 ynrayhwdts dwmpsarlsd ieevpnfema dggsahhgst reletdyylg gydidsdypp
     4441 pheeeflsqd qlppplpedy pdhyealpps qpvsmastls pdcrrrphfh psqylpphqf
     4501 pnetdttgsq tgnefstfav gpsqntenvs agkmplslhn sldasssdvs ascgfddsev
     4561 amsdyesvee lklenvhipf vetqhqtqv
//
LOCUS       XP_053944280            1642 aa            linear   VRT 09-MAR-2023
DEFINITION  protein mono-ADP-ribosyltransferase PARP4 [Cuculus canorus].
ACCESSION   XP_053944280
VERSION     XP_053944280.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088305.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1642
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1642
                     /product="protein mono-ADP-ribosyltransferase PARP4"
                     /calculated_mol_wt=184600
     Region          3..86
                     /region_name="BRCT"
                     /note="C-terminal domain of the breast cancer suppressor
                     protein (BRCA1) and related domains; cl00038"
                     /db_xref="CDD:469589"
     Region          268..572
                     /region_name="parp_like"
                     /note="Poly(ADP-ribose) polymerase (parp) catalytic domain
                     catalyses the covalent attachment of ADP-ribose units from
                     NAD+ to itself and to a limited number of other DNA
                     binding proteins, which decreases their affinity for DNA.
                     Poly(ADP-ribose) polymerase is a...; cd01437"
                     /db_xref="CDD:238717"
     Site            order(268..319,322..337,342..351,356..364,365..373,
                     375..382)
                     /site_type="active"
                     /note="parp regulatory domain [active]"
                     /db_xref="CDD:238717"
     Site            order(367..368,445..446,451,461..463,485..487,493,496,555)
                     /site_type="active"
                     /note="Inhibitor contact residues [active]"
                     /db_xref="CDD:238717"
     Site            order(368,445..447,455,459..461,485,493,496,555)
                     /site_type="other"
                     /note="nad+ contact residues [chemical binding]"
                     /db_xref="CDD:238717"
     Region          633..743
                     /region_name="VIT"
                     /note="Vault protein inter-alpha-trypsin domain;
                     pfam08487"
                     /db_xref="CDD:462492"
     Region          <888..1029
                     /region_name="ViaA"
                     /note="Uncharacterized conserved protein, contains a von
                     Willebrand factor type A (vWA) domain [Function unknown];
                     COG2425"
                     /db_xref="CDD:441973"
     CDS             1..1642
                     /gene="PARP4"
                     /coded_by="XM_054088305.1:389..5317"
                     /db_xref="GeneID:104055347"
ORIGIN      
        1 mavfancvff ikvkhlsire ksrlkacike nggvvnftlt hecthvivdt advlschdqk
       61 kilkhqlpvl cadfiwksve kgklveveay kvnkskndns dqrpdrcdve dlsrsenena
      121 trknenvsnl iedsegries emetrfyged dqdipffpqd fevakynvle kinseeskdf
      181 vvvelqcsre hckfpfrlya hfrtqedkqc vattaeeire kyetfiadlk sqdfrlretf
      241 ppeadwlgsa vlqkvrleea ihssaicqev sdfveliwte aighldslll ksvnnislnd
      301 vskaegillq vknaldegad eealqemmke fyqvirhkse idykvskkll skkqdlcqli
      361 rdmlnisein macpnpssla kyralrckik pvdsrsnefl nveqevlknn yndcevrilq
      421 vyevgritea eeflsslgni qslfhassar nfmgilsrgl lmpkvvvedh glkrtdignl
      481 gsgiyfsnsi stsikyssps etdgtrflav cdvalgscld lyerdyslnn apsgydsvhg
      541 vrktalvssd feddefvvyk tcqvkiryiv kfclaedqik pfqsatdvel eeennepesq
      601 chlqhesfal pdadlsnhvk tglqdrlgnp vplegvyikg riidfvaqia mfqtytnhnt
      661 qpieakyvfp lddkaavcgf eafingkhvl gevkekkqah reyqkaisqg dgaylmdqda
      721 pdifvisvgn lppnstvvik ityitelsfq hgsitfhlpa slspwqqdka lnentqdtvk
      781 kvcvkqaetl kngfsldmsi empsaierih swthtlkikk teckaviktv ensslgisgf
      841 vvdiwisevy lprmwvekhp nkmseacmlv fqpefdttfe eeylsseiii lldcsnsmag
      901 salhqakqia lrvlelfcfk qtvtvvkfgt nftelssfsi niindlallk efitsatatl
      961 gstdlwktlr ylsllspsqg hrnivlisdg hiqnesmtfq ivkdnvqhtr lftcgvgsta
     1021 nrhmlrslsh ygagafeyfd pkskynwetk iqsqvsriss pecssvsikw qqfntgapep
     1081 mqapaqiqsl fnnerllvyg fiphctqatl kaiindqelq tvvsttelqk ttgtvlhkla
     1141 arafisdyed gilheneteh emkkqilknm iihlslensv isqftsfvav ekrdadetsa
     1201 ddapnileii aqedvdflpy mdwdgksves gslfskdlay gtmacysdas lyyppdflle
     1261 edepenetlr skevpaslss isqknvaqgf vniserespt cslqsnssfd gystkegysg
     1321 aklpspcdlk phglsqlcss vasnaelggv maltqrksfq tptltksgvp vdvpkpappa
     1381 llrcsfqnav gdlkhhfysf aaptqgaalf gslspictns ektnveeqvi ptfgvsqahn
     1441 kkalskrkrk qkaehwsdvi aleegfpeaf dlmeqsrcsr ttaeekipqr ielmsvnwke
     1501 vfalqnqdgs wnlspqlgki fkfdvdnlin nflirkgiqs lgpngkekll qliatllvlq
     1561 lirctkalkg ivfktlmkld dscnssgvhw alelikkaie warrverqfp sicyrlelgk
     1621 dwdsatkkil ginssnidll st
//
LOCUS       XP_053944289            1642 aa            linear   VRT 09-MAR-2023
DEFINITION  protein mono-ADP-ribosyltransferase PARP4 [Cuculus canorus].
ACCESSION   XP_053944289
VERSION     XP_053944289.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088314.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1642
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1642
                     /product="protein mono-ADP-ribosyltransferase PARP4"
                     /calculated_mol_wt=184600
     Region          3..86
                     /region_name="BRCT"
                     /note="C-terminal domain of the breast cancer suppressor
                     protein (BRCA1) and related domains; cl00038"
                     /db_xref="CDD:469589"
     Region          268..572
                     /region_name="parp_like"
                     /note="Poly(ADP-ribose) polymerase (parp) catalytic domain
                     catalyses the covalent attachment of ADP-ribose units from
                     NAD+ to itself and to a limited number of other DNA
                     binding proteins, which decreases their affinity for DNA.
                     Poly(ADP-ribose) polymerase is a...; cd01437"
                     /db_xref="CDD:238717"
     Site            order(268..319,322..337,342..351,356..364,365..373,
                     375..382)
                     /site_type="active"
                     /note="parp regulatory domain [active]"
                     /db_xref="CDD:238717"
     Site            order(367..368,445..446,451,461..463,485..487,493,496,555)
                     /site_type="active"
                     /note="Inhibitor contact residues [active]"
                     /db_xref="CDD:238717"
     Site            order(368,445..447,455,459..461,485,493,496,555)
                     /site_type="other"
                     /note="nad+ contact residues [chemical binding]"
                     /db_xref="CDD:238717"
     Region          633..743
                     /region_name="VIT"
                     /note="Vault protein inter-alpha-trypsin domain;
                     pfam08487"
                     /db_xref="CDD:462492"
     Region          <888..1029
                     /region_name="ViaA"
                     /note="Uncharacterized conserved protein, contains a von
                     Willebrand factor type A (vWA) domain [Function unknown];
                     COG2425"
                     /db_xref="CDD:441973"
     CDS             1..1642
                     /gene="PARP4"
                     /coded_by="XM_054088314.1:1567..6495"
                     /db_xref="GeneID:104055347"
ORIGIN      
        1 mavfancvff ikvkhlsire ksrlkacike nggvvnftlt hecthvivdt advlschdqk
       61 kilkhqlpvl cadfiwksve kgklveveay kvnkskndns dqrpdrcdve dlsrsenena
      121 trknenvsnl iedsegries emetrfyged dqdipffpqd fevakynvle kinseeskdf
      181 vvvelqcsre hckfpfrlya hfrtqedkqc vattaeeire kyetfiadlk sqdfrlretf
      241 ppeadwlgsa vlqkvrleea ihssaicqev sdfveliwte aighldslll ksvnnislnd
      301 vskaegillq vknaldegad eealqemmke fyqvirhkse idykvskkll skkqdlcqli
      361 rdmlnisein macpnpssla kyralrckik pvdsrsnefl nveqevlknn yndcevrilq
      421 vyevgritea eeflsslgni qslfhassar nfmgilsrgl lmpkvvvedh glkrtdignl
      481 gsgiyfsnsi stsikyssps etdgtrflav cdvalgscld lyerdyslnn apsgydsvhg
      541 vrktalvssd feddefvvyk tcqvkiryiv kfclaedqik pfqsatdvel eeennepesq
      601 chlqhesfal pdadlsnhvk tglqdrlgnp vplegvyikg riidfvaqia mfqtytnhnt
      661 qpieakyvfp lddkaavcgf eafingkhvl gevkekkqah reyqkaisqg dgaylmdqda
      721 pdifvisvgn lppnstvvik ityitelsfq hgsitfhlpa slspwqqdka lnentqdtvk
      781 kvcvkqaetl kngfsldmsi empsaierih swthtlkikk teckaviktv ensslgisgf
      841 vvdiwisevy lprmwvekhp nkmseacmlv fqpefdttfe eeylsseiii lldcsnsmag
      901 salhqakqia lrvlelfcfk qtvtvvkfgt nftelssfsi niindlallk efitsatatl
      961 gstdlwktlr ylsllspsqg hrnivlisdg hiqnesmtfq ivkdnvqhtr lftcgvgsta
     1021 nrhmlrslsh ygagafeyfd pkskynwetk iqsqvsriss pecssvsikw qqfntgapep
     1081 mqapaqiqsl fnnerllvyg fiphctqatl kaiindqelq tvvsttelqk ttgtvlhkla
     1141 arafisdyed gilheneteh emkkqilknm iihlslensv isqftsfvav ekrdadetsa
     1201 ddapnileii aqedvdflpy mdwdgksves gslfskdlay gtmacysdas lyyppdflle
     1261 edepenetlr skevpaslss isqknvaqgf vniserespt cslqsnssfd gystkegysg
     1321 aklpspcdlk phglsqlcss vasnaelggv maltqrksfq tptltksgvp vdvpkpappa
     1381 llrcsfqnav gdlkhhfysf aaptqgaalf gslspictns ektnveeqvi ptfgvsqahn
     1441 kkalskrkrk qkaehwsdvi aleegfpeaf dlmeqsrcsr ttaeekipqr ielmsvnwke
     1501 vfalqnqdgs wnlspqlgki fkfdvdnlin nflirkgiqs lgpngkekll qliatllvlq
     1561 lirctkalkg ivfktlmkld dscnssgvhw alelikkaie warrverqfp sicyrlelgk
     1621 dwdsatkkil ginssnidll st
//
LOCUS       XP_053944297            1642 aa            linear   VRT 09-MAR-2023
DEFINITION  protein mono-ADP-ribosyltransferase PARP4 [Cuculus canorus].
ACCESSION   XP_053944297
VERSION     XP_053944297.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088322.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1642
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1642
                     /product="protein mono-ADP-ribosyltransferase PARP4"
                     /calculated_mol_wt=184600
     Region          3..86
                     /region_name="BRCT"
                     /note="C-terminal domain of the breast cancer suppressor
                     protein (BRCA1) and related domains; cl00038"
                     /db_xref="CDD:469589"
     Region          268..572
                     /region_name="parp_like"
                     /note="Poly(ADP-ribose) polymerase (parp) catalytic domain
                     catalyses the covalent attachment of ADP-ribose units from
                     NAD+ to itself and to a limited number of other DNA
                     binding proteins, which decreases their affinity for DNA.
                     Poly(ADP-ribose) polymerase is a...; cd01437"
                     /db_xref="CDD:238717"
     Site            order(268..319,322..337,342..351,356..364,365..373,
                     375..382)
                     /site_type="active"
                     /note="parp regulatory domain [active]"
                     /db_xref="CDD:238717"
     Site            order(367..368,445..446,451,461..463,485..487,493,496,555)
                     /site_type="active"
                     /note="Inhibitor contact residues [active]"
                     /db_xref="CDD:238717"
     Site            order(368,445..447,455,459..461,485,493,496,555)
                     /site_type="other"
                     /note="nad+ contact residues [chemical binding]"
                     /db_xref="CDD:238717"
     Region          633..743
                     /region_name="VIT"
                     /note="Vault protein inter-alpha-trypsin domain;
                     pfam08487"
                     /db_xref="CDD:462492"
     Region          <888..1029
                     /region_name="ViaA"
                     /note="Uncharacterized conserved protein, contains a von
                     Willebrand factor type A (vWA) domain [Function unknown];
                     COG2425"
                     /db_xref="CDD:441973"
     CDS             1..1642
                     /gene="PARP4"
                     /coded_by="XM_054088322.1:342..5270"
                     /db_xref="GeneID:104055347"
ORIGIN      
        1 mavfancvff ikvkhlsire ksrlkacike nggvvnftlt hecthvivdt advlschdqk
       61 kilkhqlpvl cadfiwksve kgklveveay kvnkskndns dqrpdrcdve dlsrsenena
      121 trknenvsnl iedsegries emetrfyged dqdipffpqd fevakynvle kinseeskdf
      181 vvvelqcsre hckfpfrlya hfrtqedkqc vattaeeire kyetfiadlk sqdfrlretf
      241 ppeadwlgsa vlqkvrleea ihssaicqev sdfveliwte aighldslll ksvnnislnd
      301 vskaegillq vknaldegad eealqemmke fyqvirhkse idykvskkll skkqdlcqli
      361 rdmlnisein macpnpssla kyralrckik pvdsrsnefl nveqevlknn yndcevrilq
      421 vyevgritea eeflsslgni qslfhassar nfmgilsrgl lmpkvvvedh glkrtdignl
      481 gsgiyfsnsi stsikyssps etdgtrflav cdvalgscld lyerdyslnn apsgydsvhg
      541 vrktalvssd feddefvvyk tcqvkiryiv kfclaedqik pfqsatdvel eeennepesq
      601 chlqhesfal pdadlsnhvk tglqdrlgnp vplegvyikg riidfvaqia mfqtytnhnt
      661 qpieakyvfp lddkaavcgf eafingkhvl gevkekkqah reyqkaisqg dgaylmdqda
      721 pdifvisvgn lppnstvvik ityitelsfq hgsitfhlpa slspwqqdka lnentqdtvk
      781 kvcvkqaetl kngfsldmsi empsaierih swthtlkikk teckaviktv ensslgisgf
      841 vvdiwisevy lprmwvekhp nkmseacmlv fqpefdttfe eeylsseiii lldcsnsmag
      901 salhqakqia lrvlelfcfk qtvtvvkfgt nftelssfsi niindlallk efitsatatl
      961 gstdlwktlr ylsllspsqg hrnivlisdg hiqnesmtfq ivkdnvqhtr lftcgvgsta
     1021 nrhmlrslsh ygagafeyfd pkskynwetk iqsqvsriss pecssvsikw qqfntgapep
     1081 mqapaqiqsl fnnerllvyg fiphctqatl kaiindqelq tvvsttelqk ttgtvlhkla
     1141 arafisdyed gilheneteh emkkqilknm iihlslensv isqftsfvav ekrdadetsa
     1201 ddapnileii aqedvdflpy mdwdgksves gslfskdlay gtmacysdas lyyppdflle
     1261 edepenetlr skevpaslss isqknvaqgf vniserespt cslqsnssfd gystkegysg
     1321 aklpspcdlk phglsqlcss vasnaelggv maltqrksfq tptltksgvp vdvpkpappa
     1381 llrcsfqnav gdlkhhfysf aaptqgaalf gslspictns ektnveeqvi ptfgvsqahn
     1441 kkalskrkrk qkaehwsdvi aleegfpeaf dlmeqsrcsr ttaeekipqr ielmsvnwke
     1501 vfalqnqdgs wnlspqlgki fkfdvdnlin nflirkgiqs lgpngkekll qliatllvlq
     1561 lirctkalkg ivfktlmkld dscnssgvhw alelikkaie warrverqfp sicyrlelgk
     1621 dwdsatkkil ginssnidll st
//
LOCUS       XP_053944303            1642 aa            linear   VRT 09-MAR-2023
DEFINITION  protein mono-ADP-ribosyltransferase PARP4 [Cuculus canorus].
ACCESSION   XP_053944303
VERSION     XP_053944303.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088328.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1642
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1642
                     /product="protein mono-ADP-ribosyltransferase PARP4"
                     /calculated_mol_wt=184600
     Region          3..86
                     /region_name="BRCT"
                     /note="C-terminal domain of the breast cancer suppressor
                     protein (BRCA1) and related domains; cl00038"
                     /db_xref="CDD:469589"
     Region          268..572
                     /region_name="parp_like"
                     /note="Poly(ADP-ribose) polymerase (parp) catalytic domain
                     catalyses the covalent attachment of ADP-ribose units from
                     NAD+ to itself and to a limited number of other DNA
                     binding proteins, which decreases their affinity for DNA.
                     Poly(ADP-ribose) polymerase is a...; cd01437"
                     /db_xref="CDD:238717"
     Site            order(268..319,322..337,342..351,356..364,365..373,
                     375..382)
                     /site_type="active"
                     /note="parp regulatory domain [active]"
                     /db_xref="CDD:238717"
     Site            order(367..368,445..446,451,461..463,485..487,493,496,555)
                     /site_type="active"
                     /note="Inhibitor contact residues [active]"
                     /db_xref="CDD:238717"
     Site            order(368,445..447,455,459..461,485,493,496,555)
                     /site_type="other"
                     /note="nad+ contact residues [chemical binding]"
                     /db_xref="CDD:238717"
     Region          633..743
                     /region_name="VIT"
                     /note="Vault protein inter-alpha-trypsin domain;
                     pfam08487"
                     /db_xref="CDD:462492"
     Region          <888..1029
                     /region_name="ViaA"
                     /note="Uncharacterized conserved protein, contains a von
                     Willebrand factor type A (vWA) domain [Function unknown];
                     COG2425"
                     /db_xref="CDD:441973"
     CDS             1..1642
                     /gene="PARP4"
                     /coded_by="XM_054088328.1:143..5071"
                     /db_xref="GeneID:104055347"
ORIGIN      
        1 mavfancvff ikvkhlsire ksrlkacike nggvvnftlt hecthvivdt advlschdqk
       61 kilkhqlpvl cadfiwksve kgklveveay kvnkskndns dqrpdrcdve dlsrsenena
      121 trknenvsnl iedsegries emetrfyged dqdipffpqd fevakynvle kinseeskdf
      181 vvvelqcsre hckfpfrlya hfrtqedkqc vattaeeire kyetfiadlk sqdfrlretf
      241 ppeadwlgsa vlqkvrleea ihssaicqev sdfveliwte aighldslll ksvnnislnd
      301 vskaegillq vknaldegad eealqemmke fyqvirhkse idykvskkll skkqdlcqli
      361 rdmlnisein macpnpssla kyralrckik pvdsrsnefl nveqevlknn yndcevrilq
      421 vyevgritea eeflsslgni qslfhassar nfmgilsrgl lmpkvvvedh glkrtdignl
      481 gsgiyfsnsi stsikyssps etdgtrflav cdvalgscld lyerdyslnn apsgydsvhg
      541 vrktalvssd feddefvvyk tcqvkiryiv kfclaedqik pfqsatdvel eeennepesq
      601 chlqhesfal pdadlsnhvk tglqdrlgnp vplegvyikg riidfvaqia mfqtytnhnt
      661 qpieakyvfp lddkaavcgf eafingkhvl gevkekkqah reyqkaisqg dgaylmdqda
      721 pdifvisvgn lppnstvvik ityitelsfq hgsitfhlpa slspwqqdka lnentqdtvk
      781 kvcvkqaetl kngfsldmsi empsaierih swthtlkikk teckaviktv ensslgisgf
      841 vvdiwisevy lprmwvekhp nkmseacmlv fqpefdttfe eeylsseiii lldcsnsmag
      901 salhqakqia lrvlelfcfk qtvtvvkfgt nftelssfsi niindlallk efitsatatl
      961 gstdlwktlr ylsllspsqg hrnivlisdg hiqnesmtfq ivkdnvqhtr lftcgvgsta
     1021 nrhmlrslsh ygagafeyfd pkskynwetk iqsqvsriss pecssvsikw qqfntgapep
     1081 mqapaqiqsl fnnerllvyg fiphctqatl kaiindqelq tvvsttelqk ttgtvlhkla
     1141 arafisdyed gilheneteh emkkqilknm iihlslensv isqftsfvav ekrdadetsa
     1201 ddapnileii aqedvdflpy mdwdgksves gslfskdlay gtmacysdas lyyppdflle
     1261 edepenetlr skevpaslss isqknvaqgf vniserespt cslqsnssfd gystkegysg
     1321 aklpspcdlk phglsqlcss vasnaelggv maltqrksfq tptltksgvp vdvpkpappa
     1381 llrcsfqnav gdlkhhfysf aaptqgaalf gslspictns ektnveeqvi ptfgvsqahn
     1441 kkalskrkrk qkaehwsdvi aleegfpeaf dlmeqsrcsr ttaeekipqr ielmsvnwke
     1501 vfalqnqdgs wnlspqlgki fkfdvdnlin nflirkgiqs lgpngkekll qliatllvlq
     1561 lirctkalkg ivfktlmkld dscnssgvhw alelikkaie warrverqfp sicyrlelgk
     1621 dwdsatkkil ginssnidll st
//
LOCUS       XP_053944312            1642 aa            linear   VRT 09-MAR-2023
DEFINITION  protein mono-ADP-ribosyltransferase PARP4 [Cuculus canorus].
ACCESSION   XP_053944312
VERSION     XP_053944312.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088337.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1642
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1642
                     /product="protein mono-ADP-ribosyltransferase PARP4"
                     /calculated_mol_wt=184600
     Region          3..86
                     /region_name="BRCT"
                     /note="C-terminal domain of the breast cancer suppressor
                     protein (BRCA1) and related domains; cl00038"
                     /db_xref="CDD:469589"
     Region          268..572
                     /region_name="parp_like"
                     /note="Poly(ADP-ribose) polymerase (parp) catalytic domain
                     catalyses the covalent attachment of ADP-ribose units from
                     NAD+ to itself and to a limited number of other DNA
                     binding proteins, which decreases their affinity for DNA.
                     Poly(ADP-ribose) polymerase is a...; cd01437"
                     /db_xref="CDD:238717"
     Site            order(268..319,322..337,342..351,356..364,365..373,
                     375..382)
                     /site_type="active"
                     /note="parp regulatory domain [active]"
                     /db_xref="CDD:238717"
     Site            order(367..368,445..446,451,461..463,485..487,493,496,555)
                     /site_type="active"
                     /note="Inhibitor contact residues [active]"
                     /db_xref="CDD:238717"
     Site            order(368,445..447,455,459..461,485,493,496,555)
                     /site_type="other"
                     /note="nad+ contact residues [chemical binding]"
                     /db_xref="CDD:238717"
     Region          633..743
                     /region_name="VIT"
                     /note="Vault protein inter-alpha-trypsin domain;
                     pfam08487"
                     /db_xref="CDD:462492"
     Region          <888..1029
                     /region_name="ViaA"
                     /note="Uncharacterized conserved protein, contains a von
                     Willebrand factor type A (vWA) domain [Function unknown];
                     COG2425"
                     /db_xref="CDD:441973"
     CDS             1..1642
                     /gene="PARP4"
                     /coded_by="XM_054088337.1:273..5201"
                     /db_xref="GeneID:104055347"
ORIGIN      
        1 mavfancvff ikvkhlsire ksrlkacike nggvvnftlt hecthvivdt advlschdqk
       61 kilkhqlpvl cadfiwksve kgklveveay kvnkskndns dqrpdrcdve dlsrsenena
      121 trknenvsnl iedsegries emetrfyged dqdipffpqd fevakynvle kinseeskdf
      181 vvvelqcsre hckfpfrlya hfrtqedkqc vattaeeire kyetfiadlk sqdfrlretf
      241 ppeadwlgsa vlqkvrleea ihssaicqev sdfveliwte aighldslll ksvnnislnd
      301 vskaegillq vknaldegad eealqemmke fyqvirhkse idykvskkll skkqdlcqli
      361 rdmlnisein macpnpssla kyralrckik pvdsrsnefl nveqevlknn yndcevrilq
      421 vyevgritea eeflsslgni qslfhassar nfmgilsrgl lmpkvvvedh glkrtdignl
      481 gsgiyfsnsi stsikyssps etdgtrflav cdvalgscld lyerdyslnn apsgydsvhg
      541 vrktalvssd feddefvvyk tcqvkiryiv kfclaedqik pfqsatdvel eeennepesq
      601 chlqhesfal pdadlsnhvk tglqdrlgnp vplegvyikg riidfvaqia mfqtytnhnt
      661 qpieakyvfp lddkaavcgf eafingkhvl gevkekkqah reyqkaisqg dgaylmdqda
      721 pdifvisvgn lppnstvvik ityitelsfq hgsitfhlpa slspwqqdka lnentqdtvk
      781 kvcvkqaetl kngfsldmsi empsaierih swthtlkikk teckaviktv ensslgisgf
      841 vvdiwisevy lprmwvekhp nkmseacmlv fqpefdttfe eeylsseiii lldcsnsmag
      901 salhqakqia lrvlelfcfk qtvtvvkfgt nftelssfsi niindlallk efitsatatl
      961 gstdlwktlr ylsllspsqg hrnivlisdg hiqnesmtfq ivkdnvqhtr lftcgvgsta
     1021 nrhmlrslsh ygagafeyfd pkskynwetk iqsqvsriss pecssvsikw qqfntgapep
     1081 mqapaqiqsl fnnerllvyg fiphctqatl kaiindqelq tvvsttelqk ttgtvlhkla
     1141 arafisdyed gilheneteh emkkqilknm iihlslensv isqftsfvav ekrdadetsa
     1201 ddapnileii aqedvdflpy mdwdgksves gslfskdlay gtmacysdas lyyppdflle
     1261 edepenetlr skevpaslss isqknvaqgf vniserespt cslqsnssfd gystkegysg
     1321 aklpspcdlk phglsqlcss vasnaelggv maltqrksfq tptltksgvp vdvpkpappa
     1381 llrcsfqnav gdlkhhfysf aaptqgaalf gslspictns ektnveeqvi ptfgvsqahn
     1441 kkalskrkrk qkaehwsdvi aleegfpeaf dlmeqsrcsr ttaeekipqr ielmsvnwke
     1501 vfalqnqdgs wnlspqlgki fkfdvdnlin nflirkgiqs lgpngkekll qliatllvlq
     1561 lirctkalkg ivfktlmkld dscnssgvhw alelikkaie warrverqfp sicyrlelgk
     1621 dwdsatkkil ginssnidll st
//
LOCUS       XP_009555504             776 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protease serine 7-like isoform X1 [Cuculus canorus].
ACCESSION   XP_009555504
VERSION     XP_009555504.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557209.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555504.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..776
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..776
                     /product="transmembrane protease serine 7-like isoform X1"
                     /calculated_mol_wt=87466
     Region          86..>157
                     /region_name="SEA"
                     /note="SEA domain; pfam01390"
                     /db_xref="CDD:460188"
     Region          <243..331
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cd00041"
                     /db_xref="CDD:238001"
     Region          337..445
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cd00041"
                     /db_xref="CDD:238001"
     Site            order(345,347,349,377,382,415,440,442,444..445)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     Region          491..526
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(496,504,516..517)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(508,512,516,522..523)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            519..523
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          538..774
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cd00190"
                     /db_xref="CDD:238113"
     Site            538
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(579,633,727)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(721,747,749)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..776
                     /gene="LOC104056005"
                     /coded_by="XM_009557209.2:799..3129"
                     /db_xref="GeneID:104056005"
ORIGIN      
        1 mqalpsnrvs vysisapyds eqtagqeslh irncpsnqeg fsqkyyffkw mrrrwllgil
       61 ptvclivtvi mlvlhylfsp tfsflyisgs ieisnltytn dlndpksqkf llqaeaiqny
      121 faksyesssw geyylksivv tfsegesglr ayywntfwap qdivaslkkl tpveqkeics
      181 kqaarmfsss geedldlaam elfvsdsaeh dvmlksavsf dlyakpgnnr tltlmnpkks
      241 fyqwrlrvps nyvvrlvvit lhgvtpesca thhlsaydfl lplqnkiitr wcepgawtpv
      301 irltssgnvm lvtftldqre ernilkahfq avpkimcggh yiswngtlss pyypsyyppn
      361 idcswiirap lpgyrlslki liiqiqeksp gsskcdkdwl eidgvkycka lsennrniey
      421 gysvainfhs devvthkgfy ieyeafshtd rcspeqlncg dkkcksqykt ckdddscgve
      481 sdesncsyks cspyaykcin gkcllksnpe cdgkrdcadg sdemscacgr rqlkknrivg
      541 gedarsgkwp wqaslqmgah ghicgatvis nkwlisaahc fldsesvrys spsgwraymg
      601 lraineknnh vamrsikrii vhprydpsis dydiallemd spvffselvq piclpstsri
      661 fmygtvcyvt gwgaikensp laktlqearv kiinqsvcnk lyddlitsrm lcagnlnggv
      721 dacqgdsggp lactgkgnrw ylagivswge gcarrnrpgv ytkvmvlydw irqntn
//
LOCUS       XP_053944339             776 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protease serine 7-like isoform X1 [Cuculus canorus].
ACCESSION   XP_053944339
VERSION     XP_053944339.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088364.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..776
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..776
                     /product="transmembrane protease serine 7-like isoform X1"
                     /calculated_mol_wt=87466
     Region          86..>157
                     /region_name="SEA"
                     /note="SEA domain; pfam01390"
                     /db_xref="CDD:460188"
     Region          <243..331
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cd00041"
                     /db_xref="CDD:238001"
     Region          337..445
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cd00041"
                     /db_xref="CDD:238001"
     Site            order(345,347,349,377,382,415,440,442,444..445)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     Region          491..526
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(496,504,516..517)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(508,512,516,522..523)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            519..523
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          538..774
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cd00190"
                     /db_xref="CDD:238113"
     Site            538
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(579,633,727)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(721,747,749)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..776
                     /gene="LOC104056005"
                     /coded_by="XM_054088364.1:420..2750"
                     /db_xref="GeneID:104056005"
ORIGIN      
        1 mqalpsnrvs vysisapyds eqtagqeslh irncpsnqeg fsqkyyffkw mrrrwllgil
       61 ptvclivtvi mlvlhylfsp tfsflyisgs ieisnltytn dlndpksqkf llqaeaiqny
      121 faksyesssw geyylksivv tfsegesglr ayywntfwap qdivaslkkl tpveqkeics
      181 kqaarmfsss geedldlaam elfvsdsaeh dvmlksavsf dlyakpgnnr tltlmnpkks
      241 fyqwrlrvps nyvvrlvvit lhgvtpesca thhlsaydfl lplqnkiitr wcepgawtpv
      301 irltssgnvm lvtftldqre ernilkahfq avpkimcggh yiswngtlss pyypsyyppn
      361 idcswiirap lpgyrlslki liiqiqeksp gsskcdkdwl eidgvkycka lsennrniey
      421 gysvainfhs devvthkgfy ieyeafshtd rcspeqlncg dkkcksqykt ckdddscgve
      481 sdesncsyks cspyaykcin gkcllksnpe cdgkrdcadg sdemscacgr rqlkknrivg
      541 gedarsgkwp wqaslqmgah ghicgatvis nkwlisaahc fldsesvrys spsgwraymg
      601 lraineknnh vamrsikrii vhprydpsis dydiallemd spvffselvq piclpstsri
      661 fmygtvcyvt gwgaikensp laktlqearv kiinqsvcnk lyddlitsrm lcagnlnggv
      721 dacqgdsggp lactgkgnrw ylagivswge gcarrnrpgv ytkvmvlydw irqntn
//
LOCUS       XP_053944348             726 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protease serine 7-like isoform X2 [Cuculus canorus].
ACCESSION   XP_053944348
VERSION     XP_053944348.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088373.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..726
                     /product="transmembrane protease serine 7-like isoform X2"
                     /calculated_mol_wt=81693
     Region          36..>107
                     /region_name="SEA"
                     /note="SEA domain; pfam01390"
                     /db_xref="CDD:460188"
     Region          <193..281
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cd00041"
                     /db_xref="CDD:238001"
     Region          287..395
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cd00041"
                     /db_xref="CDD:238001"
     Site            order(295,297,299,327,332,365,390,392,394..395)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     Region          441..476
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(446,454,466..467)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(458,462,466,472..473)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            469..473
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          488..724
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cd00190"
                     /db_xref="CDD:238113"
     Site            488
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(529,583,677)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(671,697,699)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..726
                     /gene="LOC104056005"
                     /coded_by="XM_054088373.1:403..2583"
                     /db_xref="GeneID:104056005"
ORIGIN      
        1 mrrrwllgil ptvclivtvi mlvlhylfsp tfsflyisgs ieisnltytn dlndpksqkf
       61 llqaeaiqny faksyesssw geyylksivv tfsegesglr ayywntfwap qdivaslkkl
      121 tpveqkeics kqaarmfsss geedldlaam elfvsdsaeh dvmlksavsf dlyakpgnnr
      181 tltlmnpkks fyqwrlrvps nyvvrlvvit lhgvtpesca thhlsaydfl lplqnkiitr
      241 wcepgawtpv irltssgnvm lvtftldqre ernilkahfq avpkimcggh yiswngtlss
      301 pyypsyyppn idcswiirap lpgyrlslki liiqiqeksp gsskcdkdwl eidgvkycka
      361 lsennrniey gysvainfhs devvthkgfy ieyeafshtd rcspeqlncg dkkcksqykt
      421 ckdddscgve sdesncsyks cspyaykcin gkcllksnpe cdgkrdcadg sdemscacgr
      481 rqlkknrivg gedarsgkwp wqaslqmgah ghicgatvis nkwlisaahc fldsesvrys
      541 spsgwraymg lraineknnh vamrsikrii vhprydpsis dydiallemd spvffselvq
      601 piclpstsri fmygtvcyvt gwgaikensp laktlqearv kiinqsvcnk lyddlitsrm
      661 lcagnlnggv dacqgdsggp lactgkgnrw ylagivswge gcarrnrpgv ytkvmvlydw
      721 irqntn
//
LOCUS       XP_009555506             232 aa            linear   VRT 09-MAR-2023
DEFINITION  TPA-induced transmembrane protein [Cuculus canorus].
ACCESSION   XP_009555506
VERSION     XP_009555506.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557211.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555506.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..232
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..232
                     /product="TPA-induced transmembrane protein"
                     /calculated_mol_wt=26864
     CDS             1..232
                     /gene="C1H3orf52"
                     /coded_by="XM_009557211.2:292..990"
                     /db_xref="GeneID:104056006"
ORIGIN      
        1 msclracfrd rglpteteam krqgfgqehe iielqednmk eseadqdkpl ngqsrkerdd
       61 wkscrkivfw kcklwmvitt iflvfflvil islilysnvy tdeddywdtd allntgnyrn
      121 fsgtlelmcg lphlfsedit krlsdvysss palgryfrsa qvvyysnass tvfyqlefsv
      181 ppstegfmen tmnpdfirnv lrqniydeed tfnpetsecd tlkldptslt lt
//
LOCUS       XP_053944371             232 aa            linear   VRT 09-MAR-2023
DEFINITION  TPA-induced transmembrane protein [Cuculus canorus].
ACCESSION   XP_053944371
VERSION     XP_053944371.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088396.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..232
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..232
                     /product="TPA-induced transmembrane protein"
                     /calculated_mol_wt=26864
     CDS             1..232
                     /gene="C1H3orf52"
                     /coded_by="XM_054088396.1:170..868"
                     /db_xref="GeneID:104056006"
ORIGIN      
        1 msclracfrd rglpteteam krqgfgqehe iielqednmk eseadqdkpl ngqsrkerdd
       61 wkscrkivfw kcklwmvitt iflvfflvil islilysnvy tdeddywdtd allntgnyrn
      121 fsgtlelmcg lphlfsedit krlsdvysss palgryfrsa qvvyysnass tvfyqlefsv
      181 ppstegfmen tmnpdfirnv lrqniydeed tfnpetsecd tlkldptslt lt
//
LOCUS       XP_053944379             232 aa            linear   VRT 09-MAR-2023
DEFINITION  TPA-induced transmembrane protein [Cuculus canorus].
ACCESSION   XP_053944379
VERSION     XP_053944379.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088404.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..232
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..232
                     /product="TPA-induced transmembrane protein"
                     /calculated_mol_wt=26864
     CDS             1..232
                     /gene="C1H3orf52"
                     /coded_by="XM_054088404.1:71..769"
                     /db_xref="GeneID:104056006"
ORIGIN      
        1 msclracfrd rglpteteam krqgfgqehe iielqednmk eseadqdkpl ngqsrkerdd
       61 wkscrkivfw kcklwmvitt iflvfflvil islilysnvy tdeddywdtd allntgnyrn
      121 fsgtlelmcg lphlfsedit krlsdvysss palgryfrsa qvvyysnass tvfyqlefsv
      181 ppstegfmen tmnpdfirnv lrqniydeed tfnpetsecd tlkldptslt lt
//
LOCUS       XP_053944402             750 aa            linear   VRT 09-MAR-2023
DEFINITION  WD repeat-containing protein 91 isoform X1 [Cuculus canorus].
ACCESSION   XP_053944402
VERSION     XP_053944402.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088427.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..750
                     /product="WD repeat-containing protein 91 isoform X1"
                     /calculated_mol_wt=83418
     Region          377..742
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          489..560
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          569..604
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          610..647
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          657..711
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          718..742
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..750
                     /gene="WDR91"
                     /coded_by="XM_054088427.1:81..2333"
                     /db_xref="GeneID:104063823"
ORIGIN      
        1 maaatertde lvreyllfrg ftaalkqlda eikadrekgf rvdkivdqlq qfvqtydlaa
       61 lrdywsyldr rlfsrledvy rptvnklkts lfryylvhtv qtgrndkaqe fflkqaselq
      121 nqaewkdwfv lpflptpdsn ptfatyfsrq wadtfivslh nflsvlfqcm pvpvilnfea
      181 eclrssliqe eneslrhklf alqaessrmk keelegeqlv hhklpayvan mdrlgdseld
      241 mtcsqrntah slqsrggfls sflsqskkgp srpahpsgas ptqtgstllg kkeptnhqsa
      301 kgkegavsck dgknhfsgiv agessflqqr qkrlqehgke rkellskgtf qgqsaekktd
      361 istaetelcs emnaeqadts tktpassaea vgvrqeqpfi vlsqeeygeh hssimycrvd
      421 csgrrvasld vdgvikvwsf npimqtkass iskspllsle watkrdrlll lgsgvgtvrl
      481 ydteakknlc eisidedmpr ilslacspsg asfvcsaaaq spishldfsa vssggksmnq
      541 vpgklllwdt ktmkqqlhfs lepepiainc tafnhngnll vtgaadgivr lfdmqqheca
      601 mswkahdgev ysvefsyden tvysigedgk fiqwnihksg lkvseydlps eatgpfvlsg
      661 ysgykqvqfp rgrlfafdse gnymltcsst ggvifklnge ekvlenclsl gghrapvvtv
      721 dwstamdcgt cltasmdgki klttllaqks
//
LOCUS       XP_053944412             715 aa            linear   VRT 09-MAR-2023
DEFINITION  WD repeat-containing protein 91 isoform X2 [Cuculus canorus].
ACCESSION   XP_053944412
VERSION     XP_053944412.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088437.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..715
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..715
                     /product="WD repeat-containing protein 91 isoform X2"
                     /calculated_mol_wt=79365
     Region          342..707
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          454..525
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          534..569
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          575..612
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          622..676
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          683..707
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..715
                     /gene="WDR91"
                     /coded_by="XM_054088437.1:31..2178"
                     /db_xref="GeneID:104063823"
ORIGIN      
        1 mqsvsqvdki vdqlqqfvqt ydlaalrdyw syldrrlfsr ledvyrptvn klktslfryy
       61 lvhtvqtgrn dkaqefflkq aselqnqaew kdwfvlpflp tpdsnptfat yfsrqwadtf
      121 ivslhnflsv lfqcmpvpvi lnfeaeclrs sliqeenesl rhklfalqae ssrmkkeele
      181 geqlvhhklp ayvanmdrlg dseldmtcsq rntahslqsr ggflssflsq skkgpsrpah
      241 psgasptqtg stllgkkept nhqsakgkeg avsckdgknh fsgivagess flqqrqkrlq
      301 ehgkerkell skgtfqgqsa ekktdistae telcsemnae qadtstktpa ssaeavgvrq
      361 eqpfivlsqe eygehhssim ycrvdcsgrr vasldvdgvi kvwsfnpimq tkassisksp
      421 llslewatkr drllllgsgv gtvrlydtea kknlceisid edmprilsla cspsgasfvc
      481 saaaqspish ldfsavssgg ksmnqvpgkl llwdtktmkq qlhfslepep iainctafnh
      541 ngnllvtgaa dgivrlfdmq qhecamswka hdgevysvef sydentvysi gedgkfiqwn
      601 ihksglkvse ydlpseatgp fvlsgysgyk qvqfprgrlf afdsegnyml tcsstggvif
      661 klngeekvle nclslgghra pvvtvdwsta mdcgtcltas mdgkiklttl laqks
//
LOCUS       XP_053944418             714 aa            linear   VRT 09-MAR-2023
DEFINITION  WD repeat-containing protein 91 isoform X3 [Cuculus canorus].
ACCESSION   XP_053944418
VERSION     XP_053944418.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088443.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..714
                     /product="WD repeat-containing protein 91 isoform X3"
                     /calculated_mol_wt=79303
     Region          341..706
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          453..524
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          533..568
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          574..611
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          621..675
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          682..706
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..714
                     /gene="WDR91"
                     /coded_by="XM_054088443.1:845..2989"
                     /db_xref="GeneID:104063823"
ORIGIN      
        1 millkvdkiv dqlqqfvqty dlaalrdyws yldrrlfsrl edvyrptvnk lktslfryyl
       61 vhtvqtgrnd kaqefflkqa selqnqaewk dwfvlpflpt pdsnptfaty fsrqwadtfi
      121 vslhnflsvl fqcmpvpvil nfeaeclrss liqeeneslr hklfalqaes srmkkeeleg
      181 eqlvhhklpa yvanmdrlgd seldmtcsqr ntahslqsrg gflssflsqs kkgpsrpahp
      241 sgasptqtgs tllgkkeptn hqsakgkega vsckdgknhf sgivagessf lqqrqkrlqe
      301 hgkerkells kgtfqgqsae kktdistaet elcsemnaeq adtstktpas saeavgvrqe
      361 qpfivlsqee ygehhssimy crvdcsgrrv asldvdgvik vwsfnpimqt kassiskspl
      421 lslewatkrd rllllgsgvg tvrlydteak knlceiside dmprilslac spsgasfvcs
      481 aaaqspishl dfsavssggk smnqvpgkll lwdtktmkqq lhfslepepi ainctafnhn
      541 gnllvtgaad givrlfdmqq hecamswkah dgevysvefs ydentvysig edgkfiqwni
      601 hksglkvsey dlpseatgpf vlsgysgykq vqfprgrlfa fdsegnymlt csstggvifk
      661 lngeekvlen clslgghrap vvtvdwstam dcgtcltasm dgkiklttll aqks
//
LOCUS       XP_053944430             668 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger and BTB domain-containing protein 20 [Cuculus canorus].
ACCESSION   XP_053944430
VERSION     XP_053944430.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088455.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..668
                     /product="zinc finger and BTB domain-containing protein
                     20"
                     /calculated_mol_wt=73822
     Region          6..122
                     /region_name="BTB_POZ_ZBTB20_DPZF"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 20 (ZBTB20); cd18208"
                     /db_xref="CDD:349517"
     Region          508..528
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(513,515,517,519..520,523..524,527,541,543,547..548,
                     551..552,555,569,571,573,575..576,579..580,583)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          536..>585
                     /region_name="SUF4-like"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; cd20908"
                     /db_xref="CDD:411020"
     Region          536..557
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          536..556
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(541,547,554,556,563,570)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411020"
     Region          562..584
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          576..601
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          592..612
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          644..664
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..668
                     /gene="ZBTB20"
                     /coded_by="XM_054088455.1:1058..3064"
                     /db_xref="GeneID:104055798"
ORIGIN      
        1 mterihsinl hnfsnsvlet lneqrnrghf cdvtvrihgs mlrahrcvla agspffqdkl
       61 llgysdieip svvsvqsvqk lidfmysgvl rvsqsealqi ltaasilqik tvidectriv
      121 sqnvgeiypv iqdsgqetpr gtpesgtsgq stdtesgylq shsqhsvdri ysalyacsmq
      181 ngsgersfys gavvshheta lglprdhhme dpswitrihe rsqqmeryls ttpetthcrk
      241 qprpvriqtl mgnihikqem eddydyygqq rvqilernes eectedtdqa egtesepkge
      301 sfdsgvsssi gtepdsmeqq fmaglgrdgq qepsqadqnd vpadgtqpqq qqqhvdanss
      361 spernndvem dskvltvnns iekgalqpsv nttvaqplpt tqiylrqtet ltsnlrmplt
      421 ltsntqvigt agntylpalf ttqtagsgpk pflfslpqpl agqqtqfvtv sqpglstfta
      481 qlpapqplap saghstaggq gekkpyectl cnktftakqn yvkhmfvhtg ekphqcsicw
      541 rsfslkdyli khmvthtgvr ayqcsicnkr ftqksslnvh mrlhrgeksy ecyickkkfs
      601 hktllerhva lhsatngtpg atgtgtravp agvvactegt tyvcsvcpak fdqiehfndh
      661 mrmhvsdg
//
LOCUS       XP_053944436             668 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger and BTB domain-containing protein 20 [Cuculus canorus].
ACCESSION   XP_053944436
VERSION     XP_053944436.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088461.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..668
                     /product="zinc finger and BTB domain-containing protein
                     20"
                     /calculated_mol_wt=73822
     Region          6..122
                     /region_name="BTB_POZ_ZBTB20_DPZF"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 20 (ZBTB20); cd18208"
                     /db_xref="CDD:349517"
     Region          508..528
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(513,515,517,519..520,523..524,527,541,543,547..548,
                     551..552,555,569,571,573,575..576,579..580,583)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          536..>585
                     /region_name="SUF4-like"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; cd20908"
                     /db_xref="CDD:411020"
     Region          536..557
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          536..556
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(541,547,554,556,563,570)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411020"
     Region          562..584
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          576..601
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          592..612
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          644..664
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..668
                     /gene="ZBTB20"
                     /coded_by="XM_054088461.1:1122..3128"
                     /db_xref="GeneID:104055798"
ORIGIN      
        1 mterihsinl hnfsnsvlet lneqrnrghf cdvtvrihgs mlrahrcvla agspffqdkl
       61 llgysdieip svvsvqsvqk lidfmysgvl rvsqsealqi ltaasilqik tvidectriv
      121 sqnvgeiypv iqdsgqetpr gtpesgtsgq stdtesgylq shsqhsvdri ysalyacsmq
      181 ngsgersfys gavvshheta lglprdhhme dpswitrihe rsqqmeryls ttpetthcrk
      241 qprpvriqtl mgnihikqem eddydyygqq rvqilernes eectedtdqa egtesepkge
      301 sfdsgvsssi gtepdsmeqq fmaglgrdgq qepsqadqnd vpadgtqpqq qqqhvdanss
      361 spernndvem dskvltvnns iekgalqpsv nttvaqplpt tqiylrqtet ltsnlrmplt
      421 ltsntqvigt agntylpalf ttqtagsgpk pflfslpqpl agqqtqfvtv sqpglstfta
      481 qlpapqplap saghstaggq gekkpyectl cnktftakqn yvkhmfvhtg ekphqcsicw
      541 rsfslkdyli khmvthtgvr ayqcsicnkr ftqksslnvh mrlhrgeksy ecyickkkfs
      601 hktllerhva lhsatngtpg atgtgtravp agvvactegt tyvcsvcpak fdqiehfndh
      661 mrmhvsdg
//
LOCUS       XP_053944444             668 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger and BTB domain-containing protein 20 [Cuculus canorus].
ACCESSION   XP_053944444
VERSION     XP_053944444.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088469.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..668
                     /product="zinc finger and BTB domain-containing protein
                     20"
                     /calculated_mol_wt=73822
     Region          6..122
                     /region_name="BTB_POZ_ZBTB20_DPZF"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 20 (ZBTB20); cd18208"
                     /db_xref="CDD:349517"
     Region          508..528
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(513,515,517,519..520,523..524,527,541,543,547..548,
                     551..552,555,569,571,573,575..576,579..580,583)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          536..>585
                     /region_name="SUF4-like"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; cd20908"
                     /db_xref="CDD:411020"
     Region          536..557
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          536..556
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(541,547,554,556,563,570)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411020"
     Region          562..584
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          576..601
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          592..612
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          644..664
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..668
                     /gene="ZBTB20"
                     /coded_by="XM_054088469.1:979..2985"
                     /db_xref="GeneID:104055798"
ORIGIN      
        1 mterihsinl hnfsnsvlet lneqrnrghf cdvtvrihgs mlrahrcvla agspffqdkl
       61 llgysdieip svvsvqsvqk lidfmysgvl rvsqsealqi ltaasilqik tvidectriv
      121 sqnvgeiypv iqdsgqetpr gtpesgtsgq stdtesgylq shsqhsvdri ysalyacsmq
      181 ngsgersfys gavvshheta lglprdhhme dpswitrihe rsqqmeryls ttpetthcrk
      241 qprpvriqtl mgnihikqem eddydyygqq rvqilernes eectedtdqa egtesepkge
      301 sfdsgvsssi gtepdsmeqq fmaglgrdgq qepsqadqnd vpadgtqpqq qqqhvdanss
      361 spernndvem dskvltvnns iekgalqpsv nttvaqplpt tqiylrqtet ltsnlrmplt
      421 ltsntqvigt agntylpalf ttqtagsgpk pflfslpqpl agqqtqfvtv sqpglstfta
      481 qlpapqplap saghstaggq gekkpyectl cnktftakqn yvkhmfvhtg ekphqcsicw
      541 rsfslkdyli khmvthtgvr ayqcsicnkr ftqksslnvh mrlhrgeksy ecyickkkfs
      601 hktllerhva lhsatngtpg atgtgtravp agvvactegt tyvcsvcpak fdqiehfndh
      661 mrmhvsdg
//
LOCUS       XP_053944451             668 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger and BTB domain-containing protein 20 [Cuculus canorus].
ACCESSION   XP_053944451
VERSION     XP_053944451.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088476.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..668
                     /product="zinc finger and BTB domain-containing protein
                     20"
                     /calculated_mol_wt=73822
     Region          6..122
                     /region_name="BTB_POZ_ZBTB20_DPZF"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 20 (ZBTB20); cd18208"
                     /db_xref="CDD:349517"
     Region          508..528
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(513,515,517,519..520,523..524,527,541,543,547..548,
                     551..552,555,569,571,573,575..576,579..580,583)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          536..>585
                     /region_name="SUF4-like"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; cd20908"
                     /db_xref="CDD:411020"
     Region          536..557
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          536..556
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(541,547,554,556,563,570)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411020"
     Region          562..584
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          576..601
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          592..612
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          644..664
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..668
                     /gene="ZBTB20"
                     /coded_by="XM_054088476.1:935..2941"
                     /db_xref="GeneID:104055798"
ORIGIN      
        1 mterihsinl hnfsnsvlet lneqrnrghf cdvtvrihgs mlrahrcvla agspffqdkl
       61 llgysdieip svvsvqsvqk lidfmysgvl rvsqsealqi ltaasilqik tvidectriv
      121 sqnvgeiypv iqdsgqetpr gtpesgtsgq stdtesgylq shsqhsvdri ysalyacsmq
      181 ngsgersfys gavvshheta lglprdhhme dpswitrihe rsqqmeryls ttpetthcrk
      241 qprpvriqtl mgnihikqem eddydyygqq rvqilernes eectedtdqa egtesepkge
      301 sfdsgvsssi gtepdsmeqq fmaglgrdgq qepsqadqnd vpadgtqpqq qqqhvdanss
      361 spernndvem dskvltvnns iekgalqpsv nttvaqplpt tqiylrqtet ltsnlrmplt
      421 ltsntqvigt agntylpalf ttqtagsgpk pflfslpqpl agqqtqfvtv sqpglstfta
      481 qlpapqplap saghstaggq gekkpyectl cnktftakqn yvkhmfvhtg ekphqcsicw
      541 rsfslkdyli khmvthtgvr ayqcsicnkr ftqksslnvh mrlhrgeksy ecyickkkfs
      601 hktllerhva lhsatngtpg atgtgtravp agvvactegt tyvcsvcpak fdqiehfndh
      661 mrmhvsdg
//
LOCUS       XP_053944458             668 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger and BTB domain-containing protein 20 [Cuculus canorus].
ACCESSION   XP_053944458
VERSION     XP_053944458.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088483.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..668
                     /product="zinc finger and BTB domain-containing protein
                     20"
                     /calculated_mol_wt=73822
     Region          6..122
                     /region_name="BTB_POZ_ZBTB20_DPZF"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 20 (ZBTB20); cd18208"
                     /db_xref="CDD:349517"
     Region          508..528
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(513,515,517,519..520,523..524,527,541,543,547..548,
                     551..552,555,569,571,573,575..576,579..580,583)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          536..>585
                     /region_name="SUF4-like"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; cd20908"
                     /db_xref="CDD:411020"
     Region          536..557
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          536..556
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(541,547,554,556,563,570)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411020"
     Region          562..584
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          576..601
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          592..612
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          644..664
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..668
                     /gene="ZBTB20"
                     /coded_by="XM_054088483.1:1157..3163"
                     /db_xref="GeneID:104055798"
ORIGIN      
        1 mterihsinl hnfsnsvlet lneqrnrghf cdvtvrihgs mlrahrcvla agspffqdkl
       61 llgysdieip svvsvqsvqk lidfmysgvl rvsqsealqi ltaasilqik tvidectriv
      121 sqnvgeiypv iqdsgqetpr gtpesgtsgq stdtesgylq shsqhsvdri ysalyacsmq
      181 ngsgersfys gavvshheta lglprdhhme dpswitrihe rsqqmeryls ttpetthcrk
      241 qprpvriqtl mgnihikqem eddydyygqq rvqilernes eectedtdqa egtesepkge
      301 sfdsgvsssi gtepdsmeqq fmaglgrdgq qepsqadqnd vpadgtqpqq qqqhvdanss
      361 spernndvem dskvltvnns iekgalqpsv nttvaqplpt tqiylrqtet ltsnlrmplt
      421 ltsntqvigt agntylpalf ttqtagsgpk pflfslpqpl agqqtqfvtv sqpglstfta
      481 qlpapqplap saghstaggq gekkpyectl cnktftakqn yvkhmfvhtg ekphqcsicw
      541 rsfslkdyli khmvthtgvr ayqcsicnkr ftqksslnvh mrlhrgeksy ecyickkkfs
      601 hktllerhva lhsatngtpg atgtgtravp agvvactegt tyvcsvcpak fdqiehfndh
      661 mrmhvsdg
//
LOCUS       XP_053944466             668 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger and BTB domain-containing protein 20 [Cuculus canorus].
ACCESSION   XP_053944466
VERSION     XP_053944466.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088491.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..668
                     /product="zinc finger and BTB domain-containing protein
                     20"
                     /calculated_mol_wt=73822
     Region          6..122
                     /region_name="BTB_POZ_ZBTB20_DPZF"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 20 (ZBTB20); cd18208"
                     /db_xref="CDD:349517"
     Region          508..528
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(513,515,517,519..520,523..524,527,541,543,547..548,
                     551..552,555,569,571,573,575..576,579..580,583)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          536..>585
                     /region_name="SUF4-like"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; cd20908"
                     /db_xref="CDD:411020"
     Region          536..557
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          536..556
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(541,547,554,556,563,570)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411020"
     Region          562..584
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          576..601
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          592..612
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          644..664
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..668
                     /gene="ZBTB20"
                     /coded_by="XM_054088491.1:957..2963"
                     /db_xref="GeneID:104055798"
ORIGIN      
        1 mterihsinl hnfsnsvlet lneqrnrghf cdvtvrihgs mlrahrcvla agspffqdkl
       61 llgysdieip svvsvqsvqk lidfmysgvl rvsqsealqi ltaasilqik tvidectriv
      121 sqnvgeiypv iqdsgqetpr gtpesgtsgq stdtesgylq shsqhsvdri ysalyacsmq
      181 ngsgersfys gavvshheta lglprdhhme dpswitrihe rsqqmeryls ttpetthcrk
      241 qprpvriqtl mgnihikqem eddydyygqq rvqilernes eectedtdqa egtesepkge
      301 sfdsgvsssi gtepdsmeqq fmaglgrdgq qepsqadqnd vpadgtqpqq qqqhvdanss
      361 spernndvem dskvltvnns iekgalqpsv nttvaqplpt tqiylrqtet ltsnlrmplt
      421 ltsntqvigt agntylpalf ttqtagsgpk pflfslpqpl agqqtqfvtv sqpglstfta
      481 qlpapqplap saghstaggq gekkpyectl cnktftakqn yvkhmfvhtg ekphqcsicw
      541 rsfslkdyli khmvthtgvr ayqcsicnkr ftqksslnvh mrlhrgeksy ecyickkkfs
      601 hktllerhva lhsatngtpg atgtgtravp agvvactegt tyvcsvcpak fdqiehfndh
      661 mrmhvsdg
//
LOCUS       XP_053944475             668 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger and BTB domain-containing protein 20 [Cuculus canorus].
ACCESSION   XP_053944475
VERSION     XP_053944475.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088500.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..668
                     /product="zinc finger and BTB domain-containing protein
                     20"
                     /calculated_mol_wt=73822
     Region          6..122
                     /region_name="BTB_POZ_ZBTB20_DPZF"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 20 (ZBTB20); cd18208"
                     /db_xref="CDD:349517"
     Region          508..528
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(513,515,517,519..520,523..524,527,541,543,547..548,
                     551..552,555,569,571,573,575..576,579..580,583)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          536..>585
                     /region_name="SUF4-like"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; cd20908"
                     /db_xref="CDD:411020"
     Region          536..557
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          536..556
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(541,547,554,556,563,570)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411020"
     Region          562..584
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          576..601
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          592..612
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          644..664
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..668
                     /gene="ZBTB20"
                     /coded_by="XM_054088500.1:1148..3154"
                     /db_xref="GeneID:104055798"
ORIGIN      
        1 mterihsinl hnfsnsvlet lneqrnrghf cdvtvrihgs mlrahrcvla agspffqdkl
       61 llgysdieip svvsvqsvqk lidfmysgvl rvsqsealqi ltaasilqik tvidectriv
      121 sqnvgeiypv iqdsgqetpr gtpesgtsgq stdtesgylq shsqhsvdri ysalyacsmq
      181 ngsgersfys gavvshheta lglprdhhme dpswitrihe rsqqmeryls ttpetthcrk
      241 qprpvriqtl mgnihikqem eddydyygqq rvqilernes eectedtdqa egtesepkge
      301 sfdsgvsssi gtepdsmeqq fmaglgrdgq qepsqadqnd vpadgtqpqq qqqhvdanss
      361 spernndvem dskvltvnns iekgalqpsv nttvaqplpt tqiylrqtet ltsnlrmplt
      421 ltsntqvigt agntylpalf ttqtagsgpk pflfslpqpl agqqtqfvtv sqpglstfta
      481 qlpapqplap saghstaggq gekkpyectl cnktftakqn yvkhmfvhtg ekphqcsicw
      541 rsfslkdyli khmvthtgvr ayqcsicnkr ftqksslnvh mrlhrgeksy ecyickkkfs
      601 hktllerhva lhsatngtpg atgtgtravp agvvactegt tyvcsvcpak fdqiehfndh
      661 mrmhvsdg
//
LOCUS       XP_053944483             668 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger and BTB domain-containing protein 20 [Cuculus canorus].
ACCESSION   XP_053944483
VERSION     XP_053944483.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088508.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..668
                     /product="zinc finger and BTB domain-containing protein
                     20"
                     /calculated_mol_wt=73822
     Region          6..122
                     /region_name="BTB_POZ_ZBTB20_DPZF"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 20 (ZBTB20); cd18208"
                     /db_xref="CDD:349517"
     Region          508..528
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(513,515,517,519..520,523..524,527,541,543,547..548,
                     551..552,555,569,571,573,575..576,579..580,583)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          536..>585
                     /region_name="SUF4-like"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; cd20908"
                     /db_xref="CDD:411020"
     Region          536..557
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          536..556
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(541,547,554,556,563,570)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411020"
     Region          562..584
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          576..601
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          592..612
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          644..664
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..668
                     /gene="ZBTB20"
                     /coded_by="XM_054088508.1:1154..3160"
                     /db_xref="GeneID:104055798"
ORIGIN      
        1 mterihsinl hnfsnsvlet lneqrnrghf cdvtvrihgs mlrahrcvla agspffqdkl
       61 llgysdieip svvsvqsvqk lidfmysgvl rvsqsealqi ltaasilqik tvidectriv
      121 sqnvgeiypv iqdsgqetpr gtpesgtsgq stdtesgylq shsqhsvdri ysalyacsmq
      181 ngsgersfys gavvshheta lglprdhhme dpswitrihe rsqqmeryls ttpetthcrk
      241 qprpvriqtl mgnihikqem eddydyygqq rvqilernes eectedtdqa egtesepkge
      301 sfdsgvsssi gtepdsmeqq fmaglgrdgq qepsqadqnd vpadgtqpqq qqqhvdanss
      361 spernndvem dskvltvnns iekgalqpsv nttvaqplpt tqiylrqtet ltsnlrmplt
      421 ltsntqvigt agntylpalf ttqtagsgpk pflfslpqpl agqqtqfvtv sqpglstfta
      481 qlpapqplap saghstaggq gekkpyectl cnktftakqn yvkhmfvhtg ekphqcsicw
      541 rsfslkdyli khmvthtgvr ayqcsicnkr ftqksslnvh mrlhrgeksy ecyickkkfs
      601 hktllerhva lhsatngtpg atgtgtravp agvvactegt tyvcsvcpak fdqiehfndh
      661 mrmhvsdg
//
LOCUS       XP_053944489             668 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger and BTB domain-containing protein 20 [Cuculus canorus].
ACCESSION   XP_053944489
VERSION     XP_053944489.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088514.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..668
                     /product="zinc finger and BTB domain-containing protein
                     20"
                     /calculated_mol_wt=73822
     Region          6..122
                     /region_name="BTB_POZ_ZBTB20_DPZF"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 20 (ZBTB20); cd18208"
                     /db_xref="CDD:349517"
     Region          508..528
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(513,515,517,519..520,523..524,527,541,543,547..548,
                     551..552,555,569,571,573,575..576,579..580,583)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          536..>585
                     /region_name="SUF4-like"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; cd20908"
                     /db_xref="CDD:411020"
     Region          536..557
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          536..556
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(541,547,554,556,563,570)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411020"
     Region          562..584
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          576..601
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          592..612
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          644..664
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..668
                     /gene="ZBTB20"
                     /coded_by="XM_054088514.1:999..3005"
                     /db_xref="GeneID:104055798"
ORIGIN      
        1 mterihsinl hnfsnsvlet lneqrnrghf cdvtvrihgs mlrahrcvla agspffqdkl
       61 llgysdieip svvsvqsvqk lidfmysgvl rvsqsealqi ltaasilqik tvidectriv
      121 sqnvgeiypv iqdsgqetpr gtpesgtsgq stdtesgylq shsqhsvdri ysalyacsmq
      181 ngsgersfys gavvshheta lglprdhhme dpswitrihe rsqqmeryls ttpetthcrk
      241 qprpvriqtl mgnihikqem eddydyygqq rvqilernes eectedtdqa egtesepkge
      301 sfdsgvsssi gtepdsmeqq fmaglgrdgq qepsqadqnd vpadgtqpqq qqqhvdanss
      361 spernndvem dskvltvnns iekgalqpsv nttvaqplpt tqiylrqtet ltsnlrmplt
      421 ltsntqvigt agntylpalf ttqtagsgpk pflfslpqpl agqqtqfvtv sqpglstfta
      481 qlpapqplap saghstaggq gekkpyectl cnktftakqn yvkhmfvhtg ekphqcsicw
      541 rsfslkdyli khmvthtgvr ayqcsicnkr ftqksslnvh mrlhrgeksy ecyickkkfs
      601 hktllerhva lhsatngtpg atgtgtravp agvvactegt tyvcsvcpak fdqiehfndh
      661 mrmhvsdg
//
LOCUS       XP_053944498             668 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger and BTB domain-containing protein 20 [Cuculus canorus].
ACCESSION   XP_053944498
VERSION     XP_053944498.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088523.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..668
                     /product="zinc finger and BTB domain-containing protein
                     20"
                     /calculated_mol_wt=73822
     Region          6..122
                     /region_name="BTB_POZ_ZBTB20_DPZF"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 20 (ZBTB20); cd18208"
                     /db_xref="CDD:349517"
     Region          508..528
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(513,515,517,519..520,523..524,527,541,543,547..548,
                     551..552,555,569,571,573,575..576,579..580,583)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          536..>585
                     /region_name="SUF4-like"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; cd20908"
                     /db_xref="CDD:411020"
     Region          536..557
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          536..556
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(541,547,554,556,563,570)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411020"
     Region          562..584
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          576..601
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          592..612
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          644..664
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..668
                     /gene="ZBTB20"
                     /coded_by="XM_054088523.1:898..2904"
                     /db_xref="GeneID:104055798"
ORIGIN      
        1 mterihsinl hnfsnsvlet lneqrnrghf cdvtvrihgs mlrahrcvla agspffqdkl
       61 llgysdieip svvsvqsvqk lidfmysgvl rvsqsealqi ltaasilqik tvidectriv
      121 sqnvgeiypv iqdsgqetpr gtpesgtsgq stdtesgylq shsqhsvdri ysalyacsmq
      181 ngsgersfys gavvshheta lglprdhhme dpswitrihe rsqqmeryls ttpetthcrk
      241 qprpvriqtl mgnihikqem eddydyygqq rvqilernes eectedtdqa egtesepkge
      301 sfdsgvsssi gtepdsmeqq fmaglgrdgq qepsqadqnd vpadgtqpqq qqqhvdanss
      361 spernndvem dskvltvnns iekgalqpsv nttvaqplpt tqiylrqtet ltsnlrmplt
      421 ltsntqvigt agntylpalf ttqtagsgpk pflfslpqpl agqqtqfvtv sqpglstfta
      481 qlpapqplap saghstaggq gekkpyectl cnktftakqn yvkhmfvhtg ekphqcsicw
      541 rsfslkdyli khmvthtgvr ayqcsicnkr ftqksslnvh mrlhrgeksy ecyickkkfs
      601 hktllerhva lhsatngtpg atgtgtravp agvvactegt tyvcsvcpak fdqiehfndh
      661 mrmhvsdg
//
LOCUS       XP_053944506             668 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger and BTB domain-containing protein 20 [Cuculus canorus].
ACCESSION   XP_053944506
VERSION     XP_053944506.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088531.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..668
                     /product="zinc finger and BTB domain-containing protein
                     20"
                     /calculated_mol_wt=73822
     Region          6..122
                     /region_name="BTB_POZ_ZBTB20_DPZF"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 20 (ZBTB20); cd18208"
                     /db_xref="CDD:349517"
     Region          508..528
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(513,515,517,519..520,523..524,527,541,543,547..548,
                     551..552,555,569,571,573,575..576,579..580,583)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          536..>585
                     /region_name="SUF4-like"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; cd20908"
                     /db_xref="CDD:411020"
     Region          536..557
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          536..556
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(541,547,554,556,563,570)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411020"
     Region          562..584
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          576..601
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          592..612
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          644..664
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..668
                     /gene="ZBTB20"
                     /coded_by="XM_054088531.1:896..2902"
                     /db_xref="GeneID:104055798"
ORIGIN      
        1 mterihsinl hnfsnsvlet lneqrnrghf cdvtvrihgs mlrahrcvla agspffqdkl
       61 llgysdieip svvsvqsvqk lidfmysgvl rvsqsealqi ltaasilqik tvidectriv
      121 sqnvgeiypv iqdsgqetpr gtpesgtsgq stdtesgylq shsqhsvdri ysalyacsmq
      181 ngsgersfys gavvshheta lglprdhhme dpswitrihe rsqqmeryls ttpetthcrk
      241 qprpvriqtl mgnihikqem eddydyygqq rvqilernes eectedtdqa egtesepkge
      301 sfdsgvsssi gtepdsmeqq fmaglgrdgq qepsqadqnd vpadgtqpqq qqqhvdanss
      361 spernndvem dskvltvnns iekgalqpsv nttvaqplpt tqiylrqtet ltsnlrmplt
      421 ltsntqvigt agntylpalf ttqtagsgpk pflfslpqpl agqqtqfvtv sqpglstfta
      481 qlpapqplap saghstaggq gekkpyectl cnktftakqn yvkhmfvhtg ekphqcsicw
      541 rsfslkdyli khmvthtgvr ayqcsicnkr ftqksslnvh mrlhrgeksy ecyickkkfs
      601 hktllerhva lhsatngtpg atgtgtravp agvvactegt tyvcsvcpak fdqiehfndh
      661 mrmhvsdg
//
LOCUS       XP_053944511             668 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger and BTB domain-containing protein 20 [Cuculus canorus].
ACCESSION   XP_053944511
VERSION     XP_053944511.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088536.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..668
                     /product="zinc finger and BTB domain-containing protein
                     20"
                     /calculated_mol_wt=73822
     Region          6..122
                     /region_name="BTB_POZ_ZBTB20_DPZF"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 20 (ZBTB20); cd18208"
                     /db_xref="CDD:349517"
     Region          508..528
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(513,515,517,519..520,523..524,527,541,543,547..548,
                     551..552,555,569,571,573,575..576,579..580,583)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          536..>585
                     /region_name="SUF4-like"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; cd20908"
                     /db_xref="CDD:411020"
     Region          536..557
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          536..556
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(541,547,554,556,563,570)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411020"
     Region          562..584
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          576..601
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          592..612
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          644..664
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..668
                     /gene="ZBTB20"
                     /coded_by="XM_054088536.1:891..2897"
                     /db_xref="GeneID:104055798"
ORIGIN      
        1 mterihsinl hnfsnsvlet lneqrnrghf cdvtvrihgs mlrahrcvla agspffqdkl
       61 llgysdieip svvsvqsvqk lidfmysgvl rvsqsealqi ltaasilqik tvidectriv
      121 sqnvgeiypv iqdsgqetpr gtpesgtsgq stdtesgylq shsqhsvdri ysalyacsmq
      181 ngsgersfys gavvshheta lglprdhhme dpswitrihe rsqqmeryls ttpetthcrk
      241 qprpvriqtl mgnihikqem eddydyygqq rvqilernes eectedtdqa egtesepkge
      301 sfdsgvsssi gtepdsmeqq fmaglgrdgq qepsqadqnd vpadgtqpqq qqqhvdanss
      361 spernndvem dskvltvnns iekgalqpsv nttvaqplpt tqiylrqtet ltsnlrmplt
      421 ltsntqvigt agntylpalf ttqtagsgpk pflfslpqpl agqqtqfvtv sqpglstfta
      481 qlpapqplap saghstaggq gekkpyectl cnktftakqn yvkhmfvhtg ekphqcsicw
      541 rsfslkdyli khmvthtgvr ayqcsicnkr ftqksslnvh mrlhrgeksy ecyickkkfs
      601 hktllerhva lhsatngtpg atgtgtravp agvvactegt tyvcsvcpak fdqiehfndh
      661 mrmhvsdg
//
LOCUS       XP_053944519             668 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger and BTB domain-containing protein 20 [Cuculus canorus].
ACCESSION   XP_053944519
VERSION     XP_053944519.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088544.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..668
                     /product="zinc finger and BTB domain-containing protein
                     20"
                     /calculated_mol_wt=73822
     Region          6..122
                     /region_name="BTB_POZ_ZBTB20_DPZF"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 20 (ZBTB20); cd18208"
                     /db_xref="CDD:349517"
     Region          508..528
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(513,515,517,519..520,523..524,527,541,543,547..548,
                     551..552,555,569,571,573,575..576,579..580,583)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          536..>585
                     /region_name="SUF4-like"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; cd20908"
                     /db_xref="CDD:411020"
     Region          536..557
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          536..556
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(541,547,554,556,563,570)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411020"
     Region          562..584
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          576..601
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          592..612
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          644..664
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..668
                     /gene="ZBTB20"
                     /coded_by="XM_054088544.1:865..2871"
                     /db_xref="GeneID:104055798"
ORIGIN      
        1 mterihsinl hnfsnsvlet lneqrnrghf cdvtvrihgs mlrahrcvla agspffqdkl
       61 llgysdieip svvsvqsvqk lidfmysgvl rvsqsealqi ltaasilqik tvidectriv
      121 sqnvgeiypv iqdsgqetpr gtpesgtsgq stdtesgylq shsqhsvdri ysalyacsmq
      181 ngsgersfys gavvshheta lglprdhhme dpswitrihe rsqqmeryls ttpetthcrk
      241 qprpvriqtl mgnihikqem eddydyygqq rvqilernes eectedtdqa egtesepkge
      301 sfdsgvsssi gtepdsmeqq fmaglgrdgq qepsqadqnd vpadgtqpqq qqqhvdanss
      361 spernndvem dskvltvnns iekgalqpsv nttvaqplpt tqiylrqtet ltsnlrmplt
      421 ltsntqvigt agntylpalf ttqtagsgpk pflfslpqpl agqqtqfvtv sqpglstfta
      481 qlpapqplap saghstaggq gekkpyectl cnktftakqn yvkhmfvhtg ekphqcsicw
      541 rsfslkdyli khmvthtgvr ayqcsicnkr ftqksslnvh mrlhrgeksy ecyickkkfs
      601 hktllerhva lhsatngtpg atgtgtravp agvvactegt tyvcsvcpak fdqiehfndh
      661 mrmhvsdg
//
LOCUS       XP_053944527             668 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger and BTB domain-containing protein 20 [Cuculus canorus].
ACCESSION   XP_053944527
VERSION     XP_053944527.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088552.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..668
                     /product="zinc finger and BTB domain-containing protein
                     20"
                     /calculated_mol_wt=73822
     Region          6..122
                     /region_name="BTB_POZ_ZBTB20_DPZF"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 20 (ZBTB20); cd18208"
                     /db_xref="CDD:349517"
     Region          508..528
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(513,515,517,519..520,523..524,527,541,543,547..548,
                     551..552,555,569,571,573,575..576,579..580,583)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          536..>585
                     /region_name="SUF4-like"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; cd20908"
                     /db_xref="CDD:411020"
     Region          536..557
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          536..556
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(541,547,554,556,563,570)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411020"
     Region          562..584
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          576..601
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          592..612
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          644..664
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..668
                     /gene="ZBTB20"
                     /coded_by="XM_054088552.1:861..2867"
                     /db_xref="GeneID:104055798"
ORIGIN      
        1 mterihsinl hnfsnsvlet lneqrnrghf cdvtvrihgs mlrahrcvla agspffqdkl
       61 llgysdieip svvsvqsvqk lidfmysgvl rvsqsealqi ltaasilqik tvidectriv
      121 sqnvgeiypv iqdsgqetpr gtpesgtsgq stdtesgylq shsqhsvdri ysalyacsmq
      181 ngsgersfys gavvshheta lglprdhhme dpswitrihe rsqqmeryls ttpetthcrk
      241 qprpvriqtl mgnihikqem eddydyygqq rvqilernes eectedtdqa egtesepkge
      301 sfdsgvsssi gtepdsmeqq fmaglgrdgq qepsqadqnd vpadgtqpqq qqqhvdanss
      361 spernndvem dskvltvnns iekgalqpsv nttvaqplpt tqiylrqtet ltsnlrmplt
      421 ltsntqvigt agntylpalf ttqtagsgpk pflfslpqpl agqqtqfvtv sqpglstfta
      481 qlpapqplap saghstaggq gekkpyectl cnktftakqn yvkhmfvhtg ekphqcsicw
      541 rsfslkdyli khmvthtgvr ayqcsicnkr ftqksslnvh mrlhrgeksy ecyickkkfs
      601 hktllerhva lhsatngtpg atgtgtravp agvvactegt tyvcsvcpak fdqiehfndh
      661 mrmhvsdg
//
LOCUS       XP_053944535             668 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger and BTB domain-containing protein 20 [Cuculus canorus].
ACCESSION   XP_053944535
VERSION     XP_053944535.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088560.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..668
                     /product="zinc finger and BTB domain-containing protein
                     20"
                     /calculated_mol_wt=73822
     Region          6..122
                     /region_name="BTB_POZ_ZBTB20_DPZF"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 20 (ZBTB20); cd18208"
                     /db_xref="CDD:349517"
     Region          508..528
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(513,515,517,519..520,523..524,527,541,543,547..548,
                     551..552,555,569,571,573,575..576,579..580,583)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          536..>585
                     /region_name="SUF4-like"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; cd20908"
                     /db_xref="CDD:411020"
     Region          536..557
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          536..556
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(541,547,554,556,563,570)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411020"
     Region          562..584
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          576..601
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          592..612
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          644..664
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..668
                     /gene="ZBTB20"
                     /coded_by="XM_054088560.1:925..2931"
                     /db_xref="GeneID:104055798"
ORIGIN      
        1 mterihsinl hnfsnsvlet lneqrnrghf cdvtvrihgs mlrahrcvla agspffqdkl
       61 llgysdieip svvsvqsvqk lidfmysgvl rvsqsealqi ltaasilqik tvidectriv
      121 sqnvgeiypv iqdsgqetpr gtpesgtsgq stdtesgylq shsqhsvdri ysalyacsmq
      181 ngsgersfys gavvshheta lglprdhhme dpswitrihe rsqqmeryls ttpetthcrk
      241 qprpvriqtl mgnihikqem eddydyygqq rvqilernes eectedtdqa egtesepkge
      301 sfdsgvsssi gtepdsmeqq fmaglgrdgq qepsqadqnd vpadgtqpqq qqqhvdanss
      361 spernndvem dskvltvnns iekgalqpsv nttvaqplpt tqiylrqtet ltsnlrmplt
      421 ltsntqvigt agntylpalf ttqtagsgpk pflfslpqpl agqqtqfvtv sqpglstfta
      481 qlpapqplap saghstaggq gekkpyectl cnktftakqn yvkhmfvhtg ekphqcsicw
      541 rsfslkdyli khmvthtgvr ayqcsicnkr ftqksslnvh mrlhrgeksy ecyickkkfs
      601 hktllerhva lhsatngtpg atgtgtravp agvvactegt tyvcsvcpak fdqiehfndh
      661 mrmhvsdg
//
LOCUS       XP_053944545             668 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger and BTB domain-containing protein 20 [Cuculus canorus].
ACCESSION   XP_053944545
VERSION     XP_053944545.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088570.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..668
                     /product="zinc finger and BTB domain-containing protein
                     20"
                     /calculated_mol_wt=73822
     Region          6..122
                     /region_name="BTB_POZ_ZBTB20_DPZF"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 20 (ZBTB20); cd18208"
                     /db_xref="CDD:349517"
     Region          508..528
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(513,515,517,519..520,523..524,527,541,543,547..548,
                     551..552,555,569,571,573,575..576,579..580,583)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          536..>585
                     /region_name="SUF4-like"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; cd20908"
                     /db_xref="CDD:411020"
     Region          536..557
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          536..556
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(541,547,554,556,563,570)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411020"
     Region          562..584
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          576..601
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          592..612
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          644..664
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..668
                     /gene="ZBTB20"
                     /coded_by="XM_054088570.1:906..2912"
                     /db_xref="GeneID:104055798"
ORIGIN      
        1 mterihsinl hnfsnsvlet lneqrnrghf cdvtvrihgs mlrahrcvla agspffqdkl
       61 llgysdieip svvsvqsvqk lidfmysgvl rvsqsealqi ltaasilqik tvidectriv
      121 sqnvgeiypv iqdsgqetpr gtpesgtsgq stdtesgylq shsqhsvdri ysalyacsmq
      181 ngsgersfys gavvshheta lglprdhhme dpswitrihe rsqqmeryls ttpetthcrk
      241 qprpvriqtl mgnihikqem eddydyygqq rvqilernes eectedtdqa egtesepkge
      301 sfdsgvsssi gtepdsmeqq fmaglgrdgq qepsqadqnd vpadgtqpqq qqqhvdanss
      361 spernndvem dskvltvnns iekgalqpsv nttvaqplpt tqiylrqtet ltsnlrmplt
      421 ltsntqvigt agntylpalf ttqtagsgpk pflfslpqpl agqqtqfvtv sqpglstfta
      481 qlpapqplap saghstaggq gekkpyectl cnktftakqn yvkhmfvhtg ekphqcsicw
      541 rsfslkdyli khmvthtgvr ayqcsicnkr ftqksslnvh mrlhrgeksy ecyickkkfs
      601 hktllerhva lhsatngtpg atgtgtravp agvvactegt tyvcsvcpak fdqiehfndh
      661 mrmhvsdg
//
LOCUS       XP_053944556             668 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger and BTB domain-containing protein 20 [Cuculus canorus].
ACCESSION   XP_053944556
VERSION     XP_053944556.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088581.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..668
                     /product="zinc finger and BTB domain-containing protein
                     20"
                     /calculated_mol_wt=73822
     Region          6..122
                     /region_name="BTB_POZ_ZBTB20_DPZF"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 20 (ZBTB20); cd18208"
                     /db_xref="CDD:349517"
     Region          508..528
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(513,515,517,519..520,523..524,527,541,543,547..548,
                     551..552,555,569,571,573,575..576,579..580,583)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          536..>585
                     /region_name="SUF4-like"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; cd20908"
                     /db_xref="CDD:411020"
     Region          536..557
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          536..556
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(541,547,554,556,563,570)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411020"
     Region          562..584
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          576..601
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          592..612
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          644..664
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..668
                     /gene="ZBTB20"
                     /coded_by="XM_054088581.1:903..2909"
                     /db_xref="GeneID:104055798"
ORIGIN      
        1 mterihsinl hnfsnsvlet lneqrnrghf cdvtvrihgs mlrahrcvla agspffqdkl
       61 llgysdieip svvsvqsvqk lidfmysgvl rvsqsealqi ltaasilqik tvidectriv
      121 sqnvgeiypv iqdsgqetpr gtpesgtsgq stdtesgylq shsqhsvdri ysalyacsmq
      181 ngsgersfys gavvshheta lglprdhhme dpswitrihe rsqqmeryls ttpetthcrk
      241 qprpvriqtl mgnihikqem eddydyygqq rvqilernes eectedtdqa egtesepkge
      301 sfdsgvsssi gtepdsmeqq fmaglgrdgq qepsqadqnd vpadgtqpqq qqqhvdanss
      361 spernndvem dskvltvnns iekgalqpsv nttvaqplpt tqiylrqtet ltsnlrmplt
      421 ltsntqvigt agntylpalf ttqtagsgpk pflfslpqpl agqqtqfvtv sqpglstfta
      481 qlpapqplap saghstaggq gekkpyectl cnktftakqn yvkhmfvhtg ekphqcsicw
      541 rsfslkdyli khmvthtgvr ayqcsicnkr ftqksslnvh mrlhrgeksy ecyickkkfs
      601 hktllerhva lhsatngtpg atgtgtravp agvvactegt tyvcsvcpak fdqiehfndh
      661 mrmhvsdg
//
LOCUS       XP_053944564             668 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger and BTB domain-containing protein 20 [Cuculus canorus].
ACCESSION   XP_053944564
VERSION     XP_053944564.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088589.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..668
                     /product="zinc finger and BTB domain-containing protein
                     20"
                     /calculated_mol_wt=73822
     Region          6..122
                     /region_name="BTB_POZ_ZBTB20_DPZF"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 20 (ZBTB20); cd18208"
                     /db_xref="CDD:349517"
     Region          508..528
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(513,515,517,519..520,523..524,527,541,543,547..548,
                     551..552,555,569,571,573,575..576,579..580,583)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          536..>585
                     /region_name="SUF4-like"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; cd20908"
                     /db_xref="CDD:411020"
     Region          536..557
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          536..556
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(541,547,554,556,563,570)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411020"
     Region          562..584
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          576..601
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          592..612
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          644..664
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..668
                     /gene="ZBTB20"
                     /coded_by="XM_054088589.1:998..3004"
                     /db_xref="GeneID:104055798"
ORIGIN      
        1 mterihsinl hnfsnsvlet lneqrnrghf cdvtvrihgs mlrahrcvla agspffqdkl
       61 llgysdieip svvsvqsvqk lidfmysgvl rvsqsealqi ltaasilqik tvidectriv
      121 sqnvgeiypv iqdsgqetpr gtpesgtsgq stdtesgylq shsqhsvdri ysalyacsmq
      181 ngsgersfys gavvshheta lglprdhhme dpswitrihe rsqqmeryls ttpetthcrk
      241 qprpvriqtl mgnihikqem eddydyygqq rvqilernes eectedtdqa egtesepkge
      301 sfdsgvsssi gtepdsmeqq fmaglgrdgq qepsqadqnd vpadgtqpqq qqqhvdanss
      361 spernndvem dskvltvnns iekgalqpsv nttvaqplpt tqiylrqtet ltsnlrmplt
      421 ltsntqvigt agntylpalf ttqtagsgpk pflfslpqpl agqqtqfvtv sqpglstfta
      481 qlpapqplap saghstaggq gekkpyectl cnktftakqn yvkhmfvhtg ekphqcsicw
      541 rsfslkdyli khmvthtgvr ayqcsicnkr ftqksslnvh mrlhrgeksy ecyickkkfs
      601 hktllerhva lhsatngtpg atgtgtravp agvvactegt tyvcsvcpak fdqiehfndh
      661 mrmhvsdg
//
LOCUS       XP_053944570             668 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger and BTB domain-containing protein 20 [Cuculus canorus].
ACCESSION   XP_053944570
VERSION     XP_053944570.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088595.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..668
                     /product="zinc finger and BTB domain-containing protein
                     20"
                     /calculated_mol_wt=73822
     Region          6..122
                     /region_name="BTB_POZ_ZBTB20_DPZF"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 20 (ZBTB20); cd18208"
                     /db_xref="CDD:349517"
     Region          508..528
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(513,515,517,519..520,523..524,527,541,543,547..548,
                     551..552,555,569,571,573,575..576,579..580,583)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          536..>585
                     /region_name="SUF4-like"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; cd20908"
                     /db_xref="CDD:411020"
     Region          536..557
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          536..556
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(541,547,554,556,563,570)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411020"
     Region          562..584
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          576..601
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          592..612
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          644..664
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..668
                     /gene="ZBTB20"
                     /coded_by="XM_054088595.1:936..2942"
                     /db_xref="GeneID:104055798"
ORIGIN      
        1 mterihsinl hnfsnsvlet lneqrnrghf cdvtvrihgs mlrahrcvla agspffqdkl
       61 llgysdieip svvsvqsvqk lidfmysgvl rvsqsealqi ltaasilqik tvidectriv
      121 sqnvgeiypv iqdsgqetpr gtpesgtsgq stdtesgylq shsqhsvdri ysalyacsmq
      181 ngsgersfys gavvshheta lglprdhhme dpswitrihe rsqqmeryls ttpetthcrk
      241 qprpvriqtl mgnihikqem eddydyygqq rvqilernes eectedtdqa egtesepkge
      301 sfdsgvsssi gtepdsmeqq fmaglgrdgq qepsqadqnd vpadgtqpqq qqqhvdanss
      361 spernndvem dskvltvnns iekgalqpsv nttvaqplpt tqiylrqtet ltsnlrmplt
      421 ltsntqvigt agntylpalf ttqtagsgpk pflfslpqpl agqqtqfvtv sqpglstfta
      481 qlpapqplap saghstaggq gekkpyectl cnktftakqn yvkhmfvhtg ekphqcsicw
      541 rsfslkdyli khmvthtgvr ayqcsicnkr ftqksslnvh mrlhrgeksy ecyickkkfs
      601 hktllerhva lhsatngtpg atgtgtravp agvvactegt tyvcsvcpak fdqiehfndh
      661 mrmhvsdg
//
LOCUS       XP_053944577             668 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger and BTB domain-containing protein 20 [Cuculus canorus].
ACCESSION   XP_053944577
VERSION     XP_053944577.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088602.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..668
                     /product="zinc finger and BTB domain-containing protein
                     20"
                     /calculated_mol_wt=73822
     Region          6..122
                     /region_name="BTB_POZ_ZBTB20_DPZF"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 20 (ZBTB20); cd18208"
                     /db_xref="CDD:349517"
     Region          508..528
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(513,515,517,519..520,523..524,527,541,543,547..548,
                     551..552,555,569,571,573,575..576,579..580,583)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          536..>585
                     /region_name="SUF4-like"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; cd20908"
                     /db_xref="CDD:411020"
     Region          536..557
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          536..556
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(541,547,554,556,563,570)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411020"
     Region          562..584
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          576..601
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          592..612
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          644..664
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..668
                     /gene="ZBTB20"
                     /coded_by="XM_054088602.1:841..2847"
                     /db_xref="GeneID:104055798"
ORIGIN      
        1 mterihsinl hnfsnsvlet lneqrnrghf cdvtvrihgs mlrahrcvla agspffqdkl
       61 llgysdieip svvsvqsvqk lidfmysgvl rvsqsealqi ltaasilqik tvidectriv
      121 sqnvgeiypv iqdsgqetpr gtpesgtsgq stdtesgylq shsqhsvdri ysalyacsmq
      181 ngsgersfys gavvshheta lglprdhhme dpswitrihe rsqqmeryls ttpetthcrk
      241 qprpvriqtl mgnihikqem eddydyygqq rvqilernes eectedtdqa egtesepkge
      301 sfdsgvsssi gtepdsmeqq fmaglgrdgq qepsqadqnd vpadgtqpqq qqqhvdanss
      361 spernndvem dskvltvnns iekgalqpsv nttvaqplpt tqiylrqtet ltsnlrmplt
      421 ltsntqvigt agntylpalf ttqtagsgpk pflfslpqpl agqqtqfvtv sqpglstfta
      481 qlpapqplap saghstaggq gekkpyectl cnktftakqn yvkhmfvhtg ekphqcsicw
      541 rsfslkdyli khmvthtgvr ayqcsicnkr ftqksslnvh mrlhrgeksy ecyickkkfs
      601 hktllerhva lhsatngtpg atgtgtravp agvvactegt tyvcsvcpak fdqiehfndh
      661 mrmhvsdg
//
LOCUS       XP_053944586             668 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger and BTB domain-containing protein 20 [Cuculus canorus].
ACCESSION   XP_053944586
VERSION     XP_053944586.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088611.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..668
                     /product="zinc finger and BTB domain-containing protein
                     20"
                     /calculated_mol_wt=73822
     Region          6..122
                     /region_name="BTB_POZ_ZBTB20_DPZF"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 20 (ZBTB20); cd18208"
                     /db_xref="CDD:349517"
     Region          508..528
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(513,515,517,519..520,523..524,527,541,543,547..548,
                     551..552,555,569,571,573,575..576,579..580,583)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          536..>585
                     /region_name="SUF4-like"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; cd20908"
                     /db_xref="CDD:411020"
     Region          536..557
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          536..556
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(541,547,554,556,563,570)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411020"
     Region          562..584
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          576..601
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          592..612
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          644..664
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..668
                     /gene="ZBTB20"
                     /coded_by="XM_054088611.1:918..2924"
                     /db_xref="GeneID:104055798"
ORIGIN      
        1 mterihsinl hnfsnsvlet lneqrnrghf cdvtvrihgs mlrahrcvla agspffqdkl
       61 llgysdieip svvsvqsvqk lidfmysgvl rvsqsealqi ltaasilqik tvidectriv
      121 sqnvgeiypv iqdsgqetpr gtpesgtsgq stdtesgylq shsqhsvdri ysalyacsmq
      181 ngsgersfys gavvshheta lglprdhhme dpswitrihe rsqqmeryls ttpetthcrk
      241 qprpvriqtl mgnihikqem eddydyygqq rvqilernes eectedtdqa egtesepkge
      301 sfdsgvsssi gtepdsmeqq fmaglgrdgq qepsqadqnd vpadgtqpqq qqqhvdanss
      361 spernndvem dskvltvnns iekgalqpsv nttvaqplpt tqiylrqtet ltsnlrmplt
      421 ltsntqvigt agntylpalf ttqtagsgpk pflfslpqpl agqqtqfvtv sqpglstfta
      481 qlpapqplap saghstaggq gekkpyectl cnktftakqn yvkhmfvhtg ekphqcsicw
      541 rsfslkdyli khmvthtgvr ayqcsicnkr ftqksslnvh mrlhrgeksy ecyickkkfs
      601 hktllerhva lhsatngtpg atgtgtravp agvvactegt tyvcsvcpak fdqiehfndh
      661 mrmhvsdg
//
LOCUS       XP_053944592             668 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger and BTB domain-containing protein 20 [Cuculus canorus].
ACCESSION   XP_053944592
VERSION     XP_053944592.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088617.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..668
                     /product="zinc finger and BTB domain-containing protein
                     20"
                     /calculated_mol_wt=73822
     Region          6..122
                     /region_name="BTB_POZ_ZBTB20_DPZF"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 20 (ZBTB20); cd18208"
                     /db_xref="CDD:349517"
     Region          508..528
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(513,515,517,519..520,523..524,527,541,543,547..548,
                     551..552,555,569,571,573,575..576,579..580,583)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          536..>585
                     /region_name="SUF4-like"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; cd20908"
                     /db_xref="CDD:411020"
     Region          536..557
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          536..556
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(541,547,554,556,563,570)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411020"
     Region          562..584
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          576..601
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          592..612
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          644..664
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..668
                     /gene="ZBTB20"
                     /coded_by="XM_054088617.1:854..2860"
                     /db_xref="GeneID:104055798"
ORIGIN      
        1 mterihsinl hnfsnsvlet lneqrnrghf cdvtvrihgs mlrahrcvla agspffqdkl
       61 llgysdieip svvsvqsvqk lidfmysgvl rvsqsealqi ltaasilqik tvidectriv
      121 sqnvgeiypv iqdsgqetpr gtpesgtsgq stdtesgylq shsqhsvdri ysalyacsmq
      181 ngsgersfys gavvshheta lglprdhhme dpswitrihe rsqqmeryls ttpetthcrk
      241 qprpvriqtl mgnihikqem eddydyygqq rvqilernes eectedtdqa egtesepkge
      301 sfdsgvsssi gtepdsmeqq fmaglgrdgq qepsqadqnd vpadgtqpqq qqqhvdanss
      361 spernndvem dskvltvnns iekgalqpsv nttvaqplpt tqiylrqtet ltsnlrmplt
      421 ltsntqvigt agntylpalf ttqtagsgpk pflfslpqpl agqqtqfvtv sqpglstfta
      481 qlpapqplap saghstaggq gekkpyectl cnktftakqn yvkhmfvhtg ekphqcsicw
      541 rsfslkdyli khmvthtgvr ayqcsicnkr ftqksslnvh mrlhrgeksy ecyickkkfs
      601 hktllerhva lhsatngtpg atgtgtravp agvvactegt tyvcsvcpak fdqiehfndh
      661 mrmhvsdg
//
LOCUS       XP_053944600             668 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger and BTB domain-containing protein 20 [Cuculus canorus].
ACCESSION   XP_053944600
VERSION     XP_053944600.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088625.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..668
                     /product="zinc finger and BTB domain-containing protein
                     20"
                     /calculated_mol_wt=73822
     Region          6..122
                     /region_name="BTB_POZ_ZBTB20_DPZF"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 20 (ZBTB20); cd18208"
                     /db_xref="CDD:349517"
     Region          508..528
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(513,515,517,519..520,523..524,527,541,543,547..548,
                     551..552,555,569,571,573,575..576,579..580,583)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          536..>585
                     /region_name="SUF4-like"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; cd20908"
                     /db_xref="CDD:411020"
     Region          536..557
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          536..556
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(541,547,554,556,563,570)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411020"
     Region          562..584
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          576..601
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          592..612
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          644..664
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..668
                     /gene="ZBTB20"
                     /coded_by="XM_054088625.1:657..2663"
                     /db_xref="GeneID:104055798"
ORIGIN      
        1 mterihsinl hnfsnsvlet lneqrnrghf cdvtvrihgs mlrahrcvla agspffqdkl
       61 llgysdieip svvsvqsvqk lidfmysgvl rvsqsealqi ltaasilqik tvidectriv
      121 sqnvgeiypv iqdsgqetpr gtpesgtsgq stdtesgylq shsqhsvdri ysalyacsmq
      181 ngsgersfys gavvshheta lglprdhhme dpswitrihe rsqqmeryls ttpetthcrk
      241 qprpvriqtl mgnihikqem eddydyygqq rvqilernes eectedtdqa egtesepkge
      301 sfdsgvsssi gtepdsmeqq fmaglgrdgq qepsqadqnd vpadgtqpqq qqqhvdanss
      361 spernndvem dskvltvnns iekgalqpsv nttvaqplpt tqiylrqtet ltsnlrmplt
      421 ltsntqvigt agntylpalf ttqtagsgpk pflfslpqpl agqqtqfvtv sqpglstfta
      481 qlpapqplap saghstaggq gekkpyectl cnktftakqn yvkhmfvhtg ekphqcsicw
      541 rsfslkdyli khmvthtgvr ayqcsicnkr ftqksslnvh mrlhrgeksy ecyickkkfs
      601 hktllerhva lhsatngtpg atgtgtravp agvvactegt tyvcsvcpak fdqiehfndh
      661 mrmhvsdg
//
LOCUS       XP_009555271             668 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger and BTB domain-containing protein 20 [Cuculus canorus].
ACCESSION   XP_009555271
VERSION     XP_009555271.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556976.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555271.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..668
                     /product="zinc finger and BTB domain-containing protein
                     20"
                     /calculated_mol_wt=73822
     Region          6..122
                     /region_name="BTB_POZ_ZBTB20_DPZF"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 20 (ZBTB20); cd18208"
                     /db_xref="CDD:349517"
     Region          508..528
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(513,515,517,519..520,523..524,527,541,543,547..548,
                     551..552,555,569,571,573,575..576,579..580,583)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          536..>585
                     /region_name="SUF4-like"
                     /note="N-terminal domain of Oryza sativa transcription
                     factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
                     SUF4 (AtSUF4), and similar proteins; cd20908"
                     /db_xref="CDD:411020"
     Region          536..557
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          536..556
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(541,547,554,556,563,570)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:411020"
     Region          562..584
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:411020"
     Region          564..584
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          576..601
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          592..612
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          644..664
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..668
                     /gene="ZBTB20"
                     /coded_by="XM_009556976.2:566..2572"
                     /db_xref="GeneID:104055798"
ORIGIN      
        1 mterihsinl hnfsnsvlet lneqrnrghf cdvtvrihgs mlrahrcvla agspffqdkl
       61 llgysdieip svvsvqsvqk lidfmysgvl rvsqsealqi ltaasilqik tvidectriv
      121 sqnvgeiypv iqdsgqetpr gtpesgtsgq stdtesgylq shsqhsvdri ysalyacsmq
      181 ngsgersfys gavvshheta lglprdhhme dpswitrihe rsqqmeryls ttpetthcrk
      241 qprpvriqtl mgnihikqem eddydyygqq rvqilernes eectedtdqa egtesepkge
      301 sfdsgvsssi gtepdsmeqq fmaglgrdgq qepsqadqnd vpadgtqpqq qqqhvdanss
      361 spernndvem dskvltvnns iekgalqpsv nttvaqplpt tqiylrqtet ltsnlrmplt
      421 ltsntqvigt agntylpalf ttqtagsgpk pflfslpqpl agqqtqfvtv sqpglstfta
      481 qlpapqplap saghstaggq gekkpyectl cnktftakqn yvkhmfvhtg ekphqcsicw
      541 rsfslkdyli khmvthtgvr ayqcsicnkr ftqksslnvh mrlhrgeksy ecyickkkfs
      601 hktllerhva lhsatngtpg atgtgtravp agvvactegt tyvcsvcpak fdqiehfndh
      661 mrmhvsdg
//
LOCUS       XP_053944610             260 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA-directed RNA polymerase I subunit RPA43 [Cuculus canorus].
ACCESSION   XP_053944610
VERSION     XP_053944610.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088635.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 5% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..260
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..260
                     /product="DNA-directed RNA polymerase I subunit RPA43"
                     /calculated_mol_wt=28916
     Region          <13..55
                     /region_name="RNAP_Rpb7_N_like"
                     /note="This conserved domain represents the N-terminal
                     ribonucleoprotein (RNP) domain of the Rpb7 subunit of
                     eukaryotic RNA polymerase (RNAP) II and its homologs,
                     Rpa43 of eukaryotic RNAP I, Rpc25 of eukaryotic RNAP III,
                     and RpoE (subunit E) of archaeal RNAP; cl04309"
                     /db_xref="CDD:446344"
     Region          54..>85
                     /region_name="RPA43_OB"
                     /note="RPA43 OB domain in RNA Pol I; pfam17875"
                     /db_xref="CDD:465545"
     CDS             1..260
                     /gene="LOC104064184"
                     /coded_by="XM_054088635.1:1..783"
                     /db_xref="GeneID:104064184"
ORIGIN      
        1 malvahpnss imslqevpva ydnikvvgkl gdvcdhqgfi dldievdfii fslkkgekii
       61 gvtnkvaagh igclihgcfn asilkpeqms ivqwqelrlk ignevkfevl hldsdaagvf
      121 firggltkss mrpkrsenit dstngdeipk ldhqenscnd sgggnvteqa lgetnntgre
      181 hgeeqnvdam nevcddknkk kkkrkhkqee qehvlptsds ngyqsdhkks kkkkrkhcne
      241 veeselsqms qepkakkkre
//
LOCUS       XP_053944614             667 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier organic anion transporter family member 1A2 [Cuculus
            canorus].
ACCESSION   XP_053944614
VERSION     XP_053944614.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088639.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..667
                     /product="solute carrier organic anion transporter family
                     member 1A2"
                     /calculated_mol_wt=73644
     Region          18..546
                     /region_name="MFS"
                     /note="Major Facilitator Superfamily; cl28910"
                     /db_xref="CDD:475125"
     Site            order(33..34,37..38,41,73,172..173,175..177,180,200,
                     203..204,207,329,332..333,336..338,341,370,374,415..416,
                     420,424,485,488..489,492..493,496)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:349949"
     CDS             1..667
                     /gene="SLCO1A2"
                     /coded_by="XM_054088639.1:96..2099"
                     /db_xref="GeneID:104065624"
ORIGIN      
        1 mkedgkpqak dkfccisklk vflmalslay igktmsgaym nsmytqiekq fnipsslagi
       61 ingsfelgnl lliafvsyfg aklhrpriia lgctvqafgc llislphflf gryhiessis
      121 pqenfsvmpl clvnqssfsl ptdepstece rkprsllwif vmignivrgm getpimplgv
      181 syledfakpe nspfylgclh tatimgpflg fllasycael fvdvgsvgte dititatdar
      241 wvgawwlgil icaslnllvg ipfcflpksl vkegetnepe etsknsvvll qendknedkq
      301 tvremakdfi pylkalfrnp vymlfilitv lqfsafngim tfmpkyleqq fgksaadaif
      361 liglynlpvv cvgyffggff mkkfkiniyq aaniafwlsf lvylayfstf wtvcdpspva
      421 gltvsyegie qvsyaentll aacnndcdcp lkiwdpvcgd ngityvspcl agckasrgtg
      481 ksvvfenctc vadsgfssqn vsavlgrcdg gencekmlhy ylilslacsf ifslaampgy
      541 mvlirslkpe eksfgvgihg lasrvfagip spiyfgalid atclkwgttn cggkgacrmy
      601 divryrwiyl glpaalravs yipsavvvli lrkkhksesq ivlnapvemq dkeqehqale
      661 qrkknsv
//
LOCUS       XP_053944621             667 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier organic anion transporter family member 1A2 [Cuculus
            canorus].
ACCESSION   XP_053944621
VERSION     XP_053944621.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088646.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..667
                     /product="solute carrier organic anion transporter family
                     member 1A2"
                     /calculated_mol_wt=73644
     Region          18..546
                     /region_name="MFS"
                     /note="Major Facilitator Superfamily; cl28910"
                     /db_xref="CDD:475125"
     Site            order(33..34,37..38,41,73,172..173,175..177,180,200,
                     203..204,207,329,332..333,336..338,341,370,374,415..416,
                     420,424,485,488..489,492..493,496)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:349949"
     CDS             1..667
                     /gene="SLCO1A2"
                     /coded_by="XM_054088646.1:178..2181"
                     /db_xref="GeneID:104065624"
ORIGIN      
        1 mkedgkpqak dkfccisklk vflmalslay igktmsgaym nsmytqiekq fnipsslagi
       61 ingsfelgnl lliafvsyfg aklhrpriia lgctvqafgc llislphflf gryhiessis
      121 pqenfsvmpl clvnqssfsl ptdepstece rkprsllwif vmignivrgm getpimplgv
      181 syledfakpe nspfylgclh tatimgpflg fllasycael fvdvgsvgte dititatdar
      241 wvgawwlgil icaslnllvg ipfcflpksl vkegetnepe etsknsvvll qendknedkq
      301 tvremakdfi pylkalfrnp vymlfilitv lqfsafngim tfmpkyleqq fgksaadaif
      361 liglynlpvv cvgyffggff mkkfkiniyq aaniafwlsf lvylayfstf wtvcdpspva
      421 gltvsyegie qvsyaentll aacnndcdcp lkiwdpvcgd ngityvspcl agckasrgtg
      481 ksvvfenctc vadsgfssqn vsavlgrcdg gencekmlhy ylilslacsf ifslaampgy
      541 mvlirslkpe eksfgvgihg lasrvfagip spiyfgalid atclkwgttn cggkgacrmy
      601 divryrwiyl glpaalravs yipsavvvli lrkkhksesq ivlnapvemq dkeqehqale
      661 qrkknsv
//
LOCUS       XP_053944625             667 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier organic anion transporter family member 1A2 [Cuculus
            canorus].
ACCESSION   XP_053944625
VERSION     XP_053944625.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088650.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..667
                     /product="solute carrier organic anion transporter family
                     member 1A2"
                     /calculated_mol_wt=73644
     Region          18..546
                     /region_name="MFS"
                     /note="Major Facilitator Superfamily; cl28910"
                     /db_xref="CDD:475125"
     Site            order(33..34,37..38,41,73,172..173,175..177,180,200,
                     203..204,207,329,332..333,336..338,341,370,374,415..416,
                     420,424,485,488..489,492..493,496)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:349949"
     CDS             1..667
                     /gene="SLCO1A2"
                     /coded_by="XM_054088650.1:62..2065"
                     /db_xref="GeneID:104065624"
ORIGIN      
        1 mkedgkpqak dkfccisklk vflmalslay igktmsgaym nsmytqiekq fnipsslagi
       61 ingsfelgnl lliafvsyfg aklhrpriia lgctvqafgc llislphflf gryhiessis
      121 pqenfsvmpl clvnqssfsl ptdepstece rkprsllwif vmignivrgm getpimplgv
      181 syledfakpe nspfylgclh tatimgpflg fllasycael fvdvgsvgte dititatdar
      241 wvgawwlgil icaslnllvg ipfcflpksl vkegetnepe etsknsvvll qendknedkq
      301 tvremakdfi pylkalfrnp vymlfilitv lqfsafngim tfmpkyleqq fgksaadaif
      361 liglynlpvv cvgyffggff mkkfkiniyq aaniafwlsf lvylayfstf wtvcdpspva
      421 gltvsyegie qvsyaentll aacnndcdcp lkiwdpvcgd ngityvspcl agckasrgtg
      481 ksvvfenctc vadsgfssqn vsavlgrcdg gencekmlhy ylilslacsf ifslaampgy
      541 mvlirslkpe eksfgvgihg lasrvfagip spiyfgalid atclkwgttn cggkgacrmy
      601 divryrwiyl glpaalravs yipsavvvli lrkkhksesq ivlnapvemq dkeqehqale
      661 qrkknsv
//
LOCUS       XP_053944630             667 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier organic anion transporter family member 1A2 [Cuculus
            canorus].
ACCESSION   XP_053944630
VERSION     XP_053944630.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088655.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..667
                     /product="solute carrier organic anion transporter family
                     member 1A2"
                     /calculated_mol_wt=73644
     Region          18..546
                     /region_name="MFS"
                     /note="Major Facilitator Superfamily; cl28910"
                     /db_xref="CDD:475125"
     Site            order(33..34,37..38,41,73,172..173,175..177,180,200,
                     203..204,207,329,332..333,336..338,341,370,374,415..416,
                     420,424,485,488..489,492..493,496)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:349949"
     CDS             1..667
                     /gene="SLCO1A2"
                     /coded_by="XM_054088655.1:59..2062"
                     /db_xref="GeneID:104065624"
ORIGIN      
        1 mkedgkpqak dkfccisklk vflmalslay igktmsgaym nsmytqiekq fnipsslagi
       61 ingsfelgnl lliafvsyfg aklhrpriia lgctvqafgc llislphflf gryhiessis
      121 pqenfsvmpl clvnqssfsl ptdepstece rkprsllwif vmignivrgm getpimplgv
      181 syledfakpe nspfylgclh tatimgpflg fllasycael fvdvgsvgte dititatdar
      241 wvgawwlgil icaslnllvg ipfcflpksl vkegetnepe etsknsvvll qendknedkq
      301 tvremakdfi pylkalfrnp vymlfilitv lqfsafngim tfmpkyleqq fgksaadaif
      361 liglynlpvv cvgyffggff mkkfkiniyq aaniafwlsf lvylayfstf wtvcdpspva
      421 gltvsyegie qvsyaentll aacnndcdcp lkiwdpvcgd ngityvspcl agckasrgtg
      481 ksvvfenctc vadsgfssqn vsavlgrcdg gencekmlhy ylilslacsf ifslaampgy
      541 mvlirslkpe eksfgvgihg lasrvfagip spiyfgalid atclkwgttn cggkgacrmy
      601 divryrwiyl glpaalravs yipsavvvli lrkkhksesq ivlnapvemq dkeqehqale
      661 qrkknsv
//
LOCUS       XP_009566418             667 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier organic anion transporter family member 1A2 [Cuculus
            canorus].
ACCESSION   XP_009566418
VERSION     XP_009566418.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568123.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566418.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..667
                     /product="solute carrier organic anion transporter family
                     member 1A2"
                     /calculated_mol_wt=73644
     Region          18..546
                     /region_name="MFS"
                     /note="Major Facilitator Superfamily; cl28910"
                     /db_xref="CDD:475125"
     Site            order(33..34,37..38,41,73,172..173,175..177,180,200,
                     203..204,207,329,332..333,336..338,341,370,374,415..416,
                     420,424,485,488..489,492..493,496)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:349949"
     CDS             1..667
                     /gene="SLCO1A2"
                     /coded_by="XM_009568123.2:59..2062"
                     /db_xref="GeneID:104065624"
ORIGIN      
        1 mkedgkpqak dkfccisklk vflmalslay igktmsgaym nsmytqiekq fnipsslagi
       61 ingsfelgnl lliafvsyfg aklhrpriia lgctvqafgc llislphflf gryhiessis
      121 pqenfsvmpl clvnqssfsl ptdepstece rkprsllwif vmignivrgm getpimplgv
      181 syledfakpe nspfylgclh tatimgpflg fllasycael fvdvgsvgte dititatdar
      241 wvgawwlgil icaslnllvg ipfcflpksl vkegetnepe etsknsvvll qendknedkq
      301 tvremakdfi pylkalfrnp vymlfilitv lqfsafngim tfmpkyleqq fgksaadaif
      361 liglynlpvv cvgyffggff mkkfkiniyq aaniafwlsf lvylayfstf wtvcdpspva
      421 gltvsyegie qvsyaentll aacnndcdcp lkiwdpvcgd ngityvspcl agckasrgtg
      481 ksvvfenctc vadsgfssqn vsavlgrcdg gencekmlhy ylilslacsf ifslaampgy
      541 mvlirslkpe eksfgvgihg lasrvfagip spiyfgalid atclkwgttn cggkgacrmy
      601 divryrwiyl glpaalravs yipsavvvli lrkkhksesq ivlnapvemq dkeqehqale
      661 qrkknsv
//
LOCUS       XP_009556841             181 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 47 [Cuculus canorus].
ACCESSION   XP_009556841
VERSION     XP_009556841.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009558546.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..181
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..181
                     /product="transmembrane protein 47"
                     /calculated_mol_wt=19896
     Region          21..170
                     /region_name="PMP22_Claudin"
                     /note="PMP-22/EMP/MP20/Claudin family; cl21598"
                     /db_xref="CDD:473919"
     CDS             1..181
                     /gene="TMEM47"
                     /coded_by="XM_009558546.2:146..691"
                     /db_xref="GeneID:104057208"
ORIGIN      
        1 massgsgmee vrvsvltplk lvglvcifla lcldlgavls pawvtadhqy ylslwescrk
       61 pgnldswlce stlhsdwqia tlalllggaa iiliaflvgl isicvgsrrr fyrpvavmlf
      121 aavvlqvcsl vlypikfiet vslkiyhefn wgyglawgat ifsfggaily clnpknyedy
      181 y
//
LOCUS       XP_053944661             302 aa            linear   VRT 09-MAR-2023
DEFINITION  metallophosphoesterase domain-containing protein 1 [Cuculus
            canorus].
ACCESSION   XP_053944661
VERSION     XP_053944661.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088686.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..302
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..302
                     /product="metallophosphoesterase domain-containing protein
                     1"
                     /calculated_mol_wt=34445
     Region          67..279
                     /region_name="MPP_239FB"
                     /note="Homo sapiens 239FB and related proteins,
                     metallophosphatase domain; cd07379"
                     /db_xref="CDD:277325"
     Site            order(73,75,94,125..126,221,260,262)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:277325"
     Site            order(73,75,94,125,221,260,262)
                     /site_type="other"
                     /note="putative metal binding site [ion binding]"
                     /db_xref="CDD:277325"
     CDS             1..302
                     /gene="MPPED1"
                     /coded_by="XM_054088686.1:203..1111"
                     /db_xref="GeneID:104067310"
ORIGIN      
        1 mafaqshiva arrhqhsrli ievdeyssnp tqaftfynin qgrfqpphvq mvdpvphdap
       61 kppgytrfvc isdthsrtdp iqmpygdvli hagdftelgl psevkkfnew lgslpyeyki
      121 viagnheltf dqefmadlik qdfyyfpsvs klkpesyenv qslltnciyl qdsevtvrgf
      181 riygspwqpw fygwgfnlpr gqallekwnl ipdgidilit hgpplgfldw vpkkmqrvgc
      241 vellntvqrr iqprlhvfgh ihegygvmad gtttyvnasv ctvnyqplnp pividlptpr
      301 nt
//
LOCUS       XP_053944669             302 aa            linear   VRT 09-MAR-2023
DEFINITION  metallophosphoesterase domain-containing protein 1 [Cuculus
            canorus].
ACCESSION   XP_053944669
VERSION     XP_053944669.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088694.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..302
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..302
                     /product="metallophosphoesterase domain-containing protein
                     1"
                     /calculated_mol_wt=34445
     Region          67..279
                     /region_name="MPP_239FB"
                     /note="Homo sapiens 239FB and related proteins,
                     metallophosphatase domain; cd07379"
                     /db_xref="CDD:277325"
     Site            order(73,75,94,125..126,221,260,262)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:277325"
     Site            order(73,75,94,125,221,260,262)
                     /site_type="other"
                     /note="putative metal binding site [ion binding]"
                     /db_xref="CDD:277325"
     CDS             1..302
                     /gene="MPPED1"
                     /coded_by="XM_054088694.1:511..1419"
                     /db_xref="GeneID:104067310"
ORIGIN      
        1 mafaqshiva arrhqhsrli ievdeyssnp tqaftfynin qgrfqpphvq mvdpvphdap
       61 kppgytrfvc isdthsrtdp iqmpygdvli hagdftelgl psevkkfnew lgslpyeyki
      121 viagnheltf dqefmadlik qdfyyfpsvs klkpesyenv qslltnciyl qdsevtvrgf
      181 riygspwqpw fygwgfnlpr gqallekwnl ipdgidilit hgpplgfldw vpkkmqrvgc
      241 vellntvqrr iqprlhvfgh ihegygvmad gtttyvnasv ctvnyqplnp pividlptpr
      301 nt
//
LOCUS       XP_053944678             302 aa            linear   VRT 09-MAR-2023
DEFINITION  metallophosphoesterase domain-containing protein 1 [Cuculus
            canorus].
ACCESSION   XP_053944678
VERSION     XP_053944678.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088703.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..302
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..302
                     /product="metallophosphoesterase domain-containing protein
                     1"
                     /calculated_mol_wt=34445
     Region          67..279
                     /region_name="MPP_239FB"
                     /note="Homo sapiens 239FB and related proteins,
                     metallophosphatase domain; cd07379"
                     /db_xref="CDD:277325"
     Site            order(73,75,94,125..126,221,260,262)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:277325"
     Site            order(73,75,94,125,221,260,262)
                     /site_type="other"
                     /note="putative metal binding site [ion binding]"
                     /db_xref="CDD:277325"
     CDS             1..302
                     /gene="MPPED1"
                     /coded_by="XM_054088703.1:312..1220"
                     /db_xref="GeneID:104067310"
ORIGIN      
        1 mafaqshiva arrhqhsrli ievdeyssnp tqaftfynin qgrfqpphvq mvdpvphdap
       61 kppgytrfvc isdthsrtdp iqmpygdvli hagdftelgl psevkkfnew lgslpyeyki
      121 viagnheltf dqefmadlik qdfyyfpsvs klkpesyenv qslltnciyl qdsevtvrgf
      181 riygspwqpw fygwgfnlpr gqallekwnl ipdgidilit hgpplgfldw vpkkmqrvgc
      241 vellntvqrr iqprlhvfgh ihegygvmad gtttyvnasv ctvnyqplnp pividlptpr
      301 nt
//
LOCUS       XP_053944684             302 aa            linear   VRT 09-MAR-2023
DEFINITION  metallophosphoesterase domain-containing protein 1 [Cuculus
            canorus].
ACCESSION   XP_053944684
VERSION     XP_053944684.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088709.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..302
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..302
                     /product="metallophosphoesterase domain-containing protein
                     1"
                     /calculated_mol_wt=34445
     Region          67..279
                     /region_name="MPP_239FB"
                     /note="Homo sapiens 239FB and related proteins,
                     metallophosphatase domain; cd07379"
                     /db_xref="CDD:277325"
     Site            order(73,75,94,125..126,221,260,262)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:277325"
     Site            order(73,75,94,125,221,260,262)
                     /site_type="other"
                     /note="putative metal binding site [ion binding]"
                     /db_xref="CDD:277325"
     CDS             1..302
                     /gene="MPPED1"
                     /coded_by="XM_054088709.1:633..1541"
                     /db_xref="GeneID:104067310"
ORIGIN      
        1 mafaqshiva arrhqhsrli ievdeyssnp tqaftfynin qgrfqpphvq mvdpvphdap
       61 kppgytrfvc isdthsrtdp iqmpygdvli hagdftelgl psevkkfnew lgslpyeyki
      121 viagnheltf dqefmadlik qdfyyfpsvs klkpesyenv qslltnciyl qdsevtvrgf
      181 riygspwqpw fygwgfnlpr gqallekwnl ipdgidilit hgpplgfldw vpkkmqrvgc
      241 vellntvqrr iqprlhvfgh ihegygvmad gtttyvnasv ctvnyqplnp pividlptpr
      301 nt
//
LOCUS       XP_053944689             302 aa            linear   VRT 09-MAR-2023
DEFINITION  metallophosphoesterase domain-containing protein 1 [Cuculus
            canorus].
ACCESSION   XP_053944689
VERSION     XP_053944689.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088714.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..302
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..302
                     /product="metallophosphoesterase domain-containing protein
                     1"
                     /calculated_mol_wt=34445
     Region          67..279
                     /region_name="MPP_239FB"
                     /note="Homo sapiens 239FB and related proteins,
                     metallophosphatase domain; cd07379"
                     /db_xref="CDD:277325"
     Site            order(73,75,94,125..126,221,260,262)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:277325"
     Site            order(73,75,94,125,221,260,262)
                     /site_type="other"
                     /note="putative metal binding site [ion binding]"
                     /db_xref="CDD:277325"
     CDS             1..302
                     /gene="MPPED1"
                     /coded_by="XM_054088714.1:271..1179"
                     /db_xref="GeneID:104067310"
ORIGIN      
        1 mafaqshiva arrhqhsrli ievdeyssnp tqaftfynin qgrfqpphvq mvdpvphdap
       61 kppgytrfvc isdthsrtdp iqmpygdvli hagdftelgl psevkkfnew lgslpyeyki
      121 viagnheltf dqefmadlik qdfyyfpsvs klkpesyenv qslltnciyl qdsevtvrgf
      181 riygspwqpw fygwgfnlpr gqallekwnl ipdgidilit hgpplgfldw vpkkmqrvgc
      241 vellntvqrr iqprlhvfgh ihegygvmad gtttyvnasv ctvnyqplnp pividlptpr
      301 nt
//
LOCUS       XP_053944699             638 aa            linear   VRT 09-MAR-2023
DEFINITION  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase zeta-1
            [Cuculus canorus].
ACCESSION   XP_053944699
VERSION     XP_053944699.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088724.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..638
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..638
                     /product="1-phosphatidylinositol 4,5-bisphosphate
                     phosphodiesterase zeta-1"
                     /calculated_mol_wt=73157
     Region          62..634
                     /region_name="PLN02222"
                     /note="phosphoinositide phospholipase C 2"
                     /db_xref="CDD:177868"
     Region          156..480
                     /region_name="PI-PLCc_GDPD_SF"
                     /note="Catalytic domain of phosphoinositide-specific
                     phospholipase C-like phosphodiesterases superfamily;
                     cl14615"
                     /db_xref="CDD:472694"
     Site            order(172,202,204,251,302,435)
                     /site_type="active"
                     /db_xref="CDD:176498"
     Site            order(172,217)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:176498"
     CDS             1..638
                     /gene="PLCZ1"
                     /coded_by="XM_054088724.1:1..1917"
                     /db_xref="GeneID:104065644"
ORIGIN      
        1 meenrwflsi iqnefrsgki dldhtmklle klqlpldfah vkhvfkkivd krkentinme
       61 dfraiyrtiv hrpeflelfs nysqnskfla dtqlieflrk eqyetkdcem taleiilkye
      121 pieevkkrkq msfegfirym nsedcaifrk dhrtvyqdmn hplcdyfiss shntylvsdq
      181 lvgpsdlwgy tsallkgcrc veidcwngsn nepivyhght ltskipfrsv iqvidkyafm
      241 vsdyplvlsl enhcspqqqe vmadylenil gdklltstig dtqvtqlpsp eelkfkillk
      301 nkkvgtiedg llrresgsrg eaveisdsen iteeddtddk tplyprrtsa krksdhrssp
      361 pprkkskikk ikiavalsdl viytksekfv sfehslsnqk cyennsigel qarkfvknsa
      421 kefvshtsrf itriyprgsr ttssnynpqe fwnvgcqmva lnfqtpglqm elqngkfldn
      481 ggcgyilkpe flrncnstft pqnvgshgnp mclsikvicg hqlppsslsk tnkadplvqv
      541 eiygvpqdqa kkkssvvksn alnprwdetf sftvqvpela lirfcvedei slvsneflgq
      601 ytlplmslrk gycnvpllsk dggnlegasl fvhvwyyq
//
LOCUS       XP_009555257             199 aa            linear   VRT 09-MAR-2023
DEFINITION  dermatopontin [Cuculus canorus].
ACCESSION   XP_009555257
VERSION     XP_009555257.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556962.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..199
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..199
                     /product="dermatopontin"
                     /calculated_mol_wt=23472
     Region          38..190
                     /region_name="DERM"
                     /note="Dermatopontin; pfam14704"
                     /db_xref="CDD:464273"
     CDS             1..199
                     /gene="DPT"
                     /coded_by="XM_009556962.2:34..633"
                     /db_xref="GeneID:104055784"
ORIGIN      
        1 mdlillcvfl plvtvawgqy gdyyygpyny gdndewvnvy rqgfnfqcph gqvivavrsv
       61 fskkegsdrl wnyacmpaaq slgeptecww eeinragtew yqtcsnnglv agfqsqyfps
      121 vldrewqfyc crysrrcpys cwltaeypgh ygedmdmmmy tydyyirgat ttfsavdrdr
      181 qwkfivcrmt eydcpfqnv
//
LOCUS       XP_009555317             102 aa            linear   VRT 09-MAR-2023
DEFINITION  lymphotactin [Cuculus canorus].
ACCESSION   XP_009555317
VERSION     XP_009555317.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557022.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555317.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..102
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..102
                     /product="lymphotactin"
                     /calculated_mol_wt=11465
     Region          32..99
                     /region_name="Chemokine"
                     /note="small cytokines, including a number of secreted
                     growth factors and interferons involved in mitogenic,
                     chemotactic, and inflammatory activity; distinguished from
                     other cytokines by their receptors, which are G-protein
                     coupled receptors; divided into 4...; cl00134"
                     /db_xref="CDD:469625"
     Site            order(41..45,50..55,86..95)
                     /site_type="active"
                     /note="putative receptor binding site [active]"
                     /db_xref="CDD:238169"
     Site            order(43..45,50..54)
                     /site_type="active"
                     /note="N-loop [active]"
                     /db_xref="CDD:238169"
     Site            order(52..54,74,76)
                     /site_type="other"
                     /note="putative glycosaminoglycan (GAG) binding site
                     [chemical binding]"
                     /db_xref="CDD:238169"
     Site            order(60,65,83,85,88..89,92)
                     /site_type="other"
                     /note="putative glycosaminoglycan (GAG) binding site
                     [chemical binding]"
                     /db_xref="CDD:238169"
     Site            order(61,65)
                     /site_type="other"
                     /note="30s-loop"
                     /db_xref="CDD:238169"
     Site            order(72,74)
                     /site_type="other"
                     /note="40s-loop"
                     /db_xref="CDD:238169"
     CDS             1..102
                     /gene="LOC104055837"
                     /coded_by="XM_009557022.2:118..426"
                     /db_xref="GeneID:104055837"
ORIGIN      
        1 mkkpsamklh aaailivfwl giftidtvkg sigsqpmrkf scvnlstqql nirklvsyek
       61 revpveaimf ittkgikicv spkekwvqta mkkidekrtr gk
//
LOCUS       XP_009564773             307 aa            linear   VRT 09-MAR-2023
DEFINITION  ZAR1-like protein [Cuculus canorus].
ACCESSION   XP_009564773
VERSION     XP_009564773.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566478.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564773.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..307
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..307
                     /product="ZAR1-like protein"
                     /calculated_mol_wt=34212
     Region          210..291
                     /region_name="zf-3CxxC"
                     /note="Zinc-binding domain; pfam13695"
                     /db_xref="CDD:463958"
     CDS             1..307
                     /gene="ZAR1L"
                     /coded_by="XM_009566478.2:452..1375"
                     /db_xref="GeneID:104064175"
ORIGIN      
        1 mimegfvypp fsmyqgfrgs ltpsrssdpl akqpswkqsk ssgvspfpgr pvtplpsdyl
       61 dgyrraqlqa llsqvspglv prlhrantke vgvqvslrad aavqcslgpr tlpvghslgp
      121 aalctqghpa lysplldrrp fmlpgaagcp eeeeasekip ekqkvedgsr eqqegqpeaa
      181 vlseetaetp qeetavprqr aafqfleqky gyfhckdckt rwesayvwci sgsnkvyfkq
      241 lcrkcqkgfn pyrvesiqcp tcsktrcscp qtkrhidlkr phrqelcgrc kgkklscdst
      301 ysfkyiv
//
LOCUS       XP_053944746             148 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein C11orf97 homolog [Cuculus canorus].
ACCESSION   XP_053944746
VERSION     XP_053944746.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088771.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 25% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..148
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..148
                     /product="uncharacterized protein C11orf97 homolog"
                     /calculated_mol_wt=16005
     CDS             1..148
                     /gene="C1H11orf97"
                     /coded_by="XM_054088771.1:1..447"
                     /db_xref="GeneID:104064187"
ORIGIN      
        1 mplhpamsgs wpfpagspgp gsaprladpp rprpaplwpp prpgaassep aamraagsgd
       61 saeaaaeqpw kkfvyvepsr rvkeileeel yiqeeawrvk hpaavavegi wslkknfnig
      121 slkpvsqnrn glllqpqfys rhagrknc
//
LOCUS       XP_053944755             156 aa            linear   VRT 09-MAR-2023
DEFINITION  FUN14 domain-containing protein 1 [Cuculus canorus].
ACCESSION   XP_053944755
VERSION     XP_053944755.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088780.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..156
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..156
                     /product="FUN14 domain-containing protein 1"
                     /calculated_mol_wt=17080
     Region          55..154
                     /region_name="FUN14"
                     /note="FUN14 family; pfam04930"
                     /db_xref="CDD:461487"
     CDS             1..156
                     /gene="FUNDC1"
                     /coded_by="XM_054088780.1:76..546"
                     /db_xref="GeneID:104059282"
ORIGIN      
        1 maarrprsaa ehdsdddsye vldlteyarr hhwwnrvfgr nsgpivekys vatqivmggv
       61 tgwcagflfq kvgklaatav gggflllqia shsgyvqvdw krvekdvnka kkqlkkrank
      121 aapeintlie estefikqni vvssgfvggf llglas
//
LOCUS       XP_009563436             509 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat domain-containing protein 42 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009563436
VERSION     XP_009563436.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565141.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009563436.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..509
                     /product="ankyrin repeat domain-containing protein 42
                     isoform X1"
                     /calculated_mol_wt=57217
     Region          7..234
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          17..45
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          48..79
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          82..112
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(114,116,120..121,124..126,128..129,133,136,145,147,
                     149,153..154,157..159,161..162,166,169,178,180,182,
                     186..187,190..192,194..195,199,202)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          114..145
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          147..178
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          180..205
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          258..348
                     /region_name="Ank_2"
                     /note="Ankyrin repeats (3 copies); pfam12796"
                     /db_xref="CDD:463710"
     Site            order(258..259,262..264,266..267,271,274,284,286,288,
                     292..293,296..298,300..301,305,308,317,319,321,325..326,
                     329..331,333..334,338,341)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          286..317
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          319..347
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..509
                     /gene="ANKRD42"
                     /coded_by="XM_009565141.2:1..1530"
                     /db_xref="GeneID:104062996"
ORIGIN      
        1 mpfyysllav kkkqnytsvh davragdveq lasmiksgad inevdlvhkf tplhcaahcg
       61 sleclhwllw hgadparvtv ggwtaahlaa irgqdacmqa llrngtsgea qddrgctash
      121 laaahgqsyt lqtllrsgan vnvsdrndwk pvhyaafhgr lgclqllvrw gacidevdns
      181 gnlpahlaam eghlhcfkfl vnkmasvvht lkarndhget prdlaerfyk dnilqyidsv
      241 ekegehpemq evlafpahca afkgdllvlr rlvrsgvini nerddkgstl mhkaaiqghi
      301 hclqwliemg adcditndag etpkdvakrf aqssavellt qrtgdsnsse eeldpndikf
      361 ferhgvegst dskedltldk eekrnarira yrkieelqql leiaysnyrq lggiteeekk
      421 mkkeerevek lvkelnaqle yervrrekle sqldeyraei rqlreklekt cipptvpmea
      481 etipksckek kkvkrkpasi pggtfvrlr
//
LOCUS       XP_053944772             506 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat domain-containing protein 42 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053944772
VERSION     XP_053944772.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088797.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..506
                     /product="ankyrin repeat domain-containing protein 42
                     isoform X2"
                     /calculated_mol_wt=56748
     Region          1..231
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          14..42
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          45..76
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          79..109
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(111,113,117..118,121..123,125..126,130,133,142,144,
                     146,150..151,154..156,158..159,163,166,175,177,179,
                     183..184,187..189,191..192,196,199)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          111..142
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          144..175
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          177..202
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          255..345
                     /region_name="Ank_2"
                     /note="Ankyrin repeats (3 copies); pfam12796"
                     /db_xref="CDD:463710"
     Site            order(255..256,259..261,263..264,268,271,281,283,285,
                     289..290,293..295,297..298,302,305,314,316,318,322..323,
                     326..328,330..331,335,338)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          283..314
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          316..344
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..506
                     /gene="ANKRD42"
                     /coded_by="XM_054088797.1:115..1635"
                     /db_xref="GeneID:104062996"
ORIGIN      
        1 matleavkkk qnytsvhdav ragdveqlas miksgadine vdlvhkftpl hcaahcgsle
       61 clhwllwhga dparvtvggw taahlaairg qdacmqallr ngtsgeaqdd rgctashlaa
      121 ahgqsytlqt llrsganvnv sdrndwkpvh yaafhgrlgc lqllvrwgac idevdnsgnl
      181 pahlaamegh lhcfkflvnk masvvhtlka rndhgetprd laerfykdni lqyidsveke
      241 gehpemqevl afpahcaafk gdllvlrrlv rsgvininer ddkgstlmhk aaiqghihcl
      301 qwliemgadc ditndagetp kdvakrfaqs savelltqrt gdsnsseeel dpndikffer
      361 hgvegstdsk edltldkeek rnarirayrk ieelqqllei aysnyrqlgg iteeekkmkk
      421 eereveklvk elnaqleyer vrreklesql deyraeirql reklektcip ptvpmeaeti
      481 pksckekkkv krkpasipgg tfvrlr
//
LOCUS       XP_053944783             470 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat domain-containing protein 42 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053944783
VERSION     XP_053944783.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088808.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..470
                     /product="ankyrin repeat domain-containing protein 42
                     isoform X3"
                     /calculated_mol_wt=52852
     Region          1..248
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          14..42
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          45..73
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(75,77,81..82,85..87,89..90,94,97,106,108,110,
                     114..115,118..120,122..123,127,130,139,141,143,147..148,
                     151..153,155..156,160,163)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          75..106
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          108..139
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          141..166
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          219..309
                     /region_name="Ank_2"
                     /note="Ankyrin repeats (3 copies); pfam12796"
                     /db_xref="CDD:463710"
     Site            order(219..220,223..225,227..228,232,235,245,247,249,
                     253..254,257..259,261..262,266,269,278,280,282,286..287,
                     290..292,294..295,299,302)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          247..278
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          280..308
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..470
                     /gene="ANKRD42"
                     /coded_by="XM_054088808.1:115..1527"
                     /db_xref="GeneID:104062996"
ORIGIN      
        1 matleavkkk qnytsvhdav ragdveqlas miksgadine vdlvhkftpl hcaahcgsle
       61 allrngtsge aqddrgctas hlaaahgqsy tlqtllrsga nvnvsdrndw kpvhyaafhg
      121 rlgclqllvr wgacidevdn sgnlpahlaa meghlhcfkf lvnkmasvvh tlkarndhge
      181 tprdlaerfy kdnilqyids vekegehpem qevlafpahc aafkgdllvl rrlvrsgvin
      241 inerddkgst lmhkaaiqgh ihclqwliem gadcditnda getpkdvakr faqssavell
      301 tqrtgdsnss eeeldpndik fferhgvegs tdskedltld keekrnarir ayrkieelqq
      361 lleiaysnyr qlggiteeek kmkkeereve klvkelnaql eyervrrekl esqldeyrae
      421 irqlreklek tcipptvpme aetipkscke kkkvkrkpas ipggtfvrlr
//
LOCUS       XP_053944789             300 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat domain-containing protein 42 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053944789
VERSION     XP_053944789.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088814.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..300
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..300
                     /product="ankyrin repeat domain-containing protein 42
                     isoform X4"
                     /calculated_mol_wt=33027
     Region          1..231
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          14..42
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          45..76
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          79..109
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(111,113,117..118,121..123,125..126,130,133,142,144,
                     146,150..151,154..156,158..159,163,166,175,177,179,
                     183..184,187..189,191..192,196,199)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          111..142
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          144..175
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          177..202
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          240..281
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..300
                     /gene="ANKRD42"
                     /coded_by="XM_054088814.1:115..1017"
                     /db_xref="GeneID:104062996"
ORIGIN      
        1 matleavkkk qnytsvhdav ragdveqlas miksgadine vdlvhkftpl hcaahcgsle
       61 clhwllwhga dparvtvggw taahlaairg qdacmqallr ngtsgeaqdd rgctashlaa
      121 ahgqsytlqt llrsganvnv sdrndwkpvh yaafhgrlgc lqllvrwgac idevdnsgnl
      181 pahlaamegh lhcfkflvnk masvvhtlka rndhgetprd laerfykdni lqyidsveke
      241 gehpemqevl afpahcaafk gdllvlrrlv rsgvininer ddkgstlmhk dlpnhqlwnf
//
LOCUS       XP_053944798             253 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 90B, mitochondrial [Cuculus
            canorus].
ACCESSION   XP_053944798
VERSION     XP_053944798.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088823.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..253
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..253
                     /product="coiled-coil domain-containing protein 90B,
                     mitochondrial"
                     /calculated_mol_wt=28818
     Region          60..252
                     /region_name="CCDC90-like"
                     /note="Coiled-coil domain-containing protein 90-like;
                     pfam07798"
                     /db_xref="CDD:462268"
     CDS             1..253
                     /gene="CCDC90B"
                     /coded_by="XM_054088823.1:32..793"
                     /db_xref="GeneID:104062997"
ORIGIN      
        1 mrgsgrsaaf lawagrshsr plrapppplp rrgfaatlir ksydvrrvdi tpleqrkvtf
       61 dthalvqdle ahgfqkeqae tivsalmils nvsldtvykd mvtqaqqeit lqqimahlds
      121 irkdmvilek sefanlraen ekmkieldqv kqqlmnetgk iradskldin lersrvtemf
      181 tdqerklmea ttefhkkdtr tnsaiseisn kidteiaslk tlmesnkldt irylaasvft
      241 claialgfyr fwk
//
LOCUS       XP_053944811             669 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Aster-C isoform X1 [Cuculus canorus].
ACCESSION   XP_053944811
VERSION     XP_053944811.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088836.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..669
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..669
                     /product="protein Aster-C isoform X1"
                     /calculated_mol_wt=76864
     Region          87..180
                     /region_name="PH-GRAM_GRAMDC"
                     /note="GRAM domain-containing protein (GRAMDC) Pleckstrin
                     Homology-Glucosyltransferases, Rab-like GTPase activators
                     and Myotubularins (PH-GRAM) domain; cd13220"
                     /db_xref="CDD:275406"
     Region          336..484
                     /region_name="VASt"
                     /note="VAD1 Analog of StAR-related lipid transfer domain;
                     pfam16016"
                     /db_xref="CDD:464975"
     CDS             1..669
                     /gene="GRAMD1C"
                     /coded_by="XM_054088836.1:25..2034"
                     /db_xref="GeneID:104055794"
ORIGIN      
        1 msvqlqcarw gaavkikysd ksevhevdhg lisqlladse etlssctekm qspaqyswsa
       61 dwsfwlssst ykyrseefkr qfshlpdser livdyacalq kdillqgrly lsenwlcfhs
      121 nifrwettis ialkditfmt kektarlipn aiqiatkgek ffftsfsard rsylsifrlw
      181 qnvlldkrlt kqefwqlvhq sygselglns eemesfhsss edngqprssi cddpgerdek
      241 lpkmiglvre pmlqaegesl nsdalpevee spsekqikks plrsserkpa klvrsrslek
      301 sldlnenenl pekssasdse egvketvsen dlygrifinr vfhitadkmf eilftnshfm
      361 qrflnsrsiv davstpwnrd sngnqlrtlt ytvtinnplc gkfttatekq ilhkqsqkgq
      421 syqvdaevlt hdvpyhdyfy tvnrycisrt sshkcrlrvs aevkykkqpw glvksviekn
      481 twggiqenfk qlesdlllee yainqsieds gklvalrrrr rtlhrslaes lpkrssqhsp
      541 gdmgvesqgs iigrkrdavs rtttiivvms vfllllvlln itlflklski ehaaqslyhv
      601 qlqeesslni spemvskeei pqydkeqvkh vkgvlrdsie mleqlktsls mlqrsfdhln
      661 rtqnsktes
//
LOCUS       XP_053944821             669 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Aster-C isoform X1 [Cuculus canorus].
ACCESSION   XP_053944821
VERSION     XP_053944821.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088846.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..669
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..669
                     /product="protein Aster-C isoform X1"
                     /calculated_mol_wt=76864
     Region          87..180
                     /region_name="PH-GRAM_GRAMDC"
                     /note="GRAM domain-containing protein (GRAMDC) Pleckstrin
                     Homology-Glucosyltransferases, Rab-like GTPase activators
                     and Myotubularins (PH-GRAM) domain; cd13220"
                     /db_xref="CDD:275406"
     Region          336..484
                     /region_name="VASt"
                     /note="VAD1 Analog of StAR-related lipid transfer domain;
                     pfam16016"
                     /db_xref="CDD:464975"
     CDS             1..669
                     /gene="GRAMD1C"
                     /coded_by="XM_054088846.1:26..2035"
                     /db_xref="GeneID:104055794"
ORIGIN      
        1 msvqlqcarw gaavkikysd ksevhevdhg lisqlladse etlssctekm qspaqyswsa
       61 dwsfwlssst ykyrseefkr qfshlpdser livdyacalq kdillqgrly lsenwlcfhs
      121 nifrwettis ialkditfmt kektarlipn aiqiatkgek ffftsfsard rsylsifrlw
      181 qnvlldkrlt kqefwqlvhq sygselglns eemesfhsss edngqprssi cddpgerdek
      241 lpkmiglvre pmlqaegesl nsdalpevee spsekqikks plrsserkpa klvrsrslek
      301 sldlnenenl pekssasdse egvketvsen dlygrifinr vfhitadkmf eilftnshfm
      361 qrflnsrsiv davstpwnrd sngnqlrtlt ytvtinnplc gkfttatekq ilhkqsqkgq
      421 syqvdaevlt hdvpyhdyfy tvnrycisrt sshkcrlrvs aevkykkqpw glvksviekn
      481 twggiqenfk qlesdlllee yainqsieds gklvalrrrr rtlhrslaes lpkrssqhsp
      541 gdmgvesqgs iigrkrdavs rtttiivvms vfllllvlln itlflklski ehaaqslyhv
      601 qlqeesslni spemvskeei pqydkeqvkh vkgvlrdsie mleqlktsls mlqrsfdhln
      661 rtqnsktes
//
LOCUS       XP_053944831             668 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Aster-C isoform X2 [Cuculus canorus].
ACCESSION   XP_053944831
VERSION     XP_053944831.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088856.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..668
                     /product="protein Aster-C isoform X2"
                     /calculated_mol_wt=76471
     Region          86..179
                     /region_name="PH-GRAM_GRAMDC"
                     /note="GRAM domain-containing protein (GRAMDC) Pleckstrin
                     Homology-Glucosyltransferases, Rab-like GTPase activators
                     and Myotubularins (PH-GRAM) domain; cd13220"
                     /db_xref="CDD:275406"
     Region          335..483
                     /region_name="VASt"
                     /note="VAD1 Analog of StAR-related lipid transfer domain;
                     pfam16016"
                     /db_xref="CDD:464975"
     CDS             1..668
                     /gene="GRAMD1C"
                     /coded_by="XM_054088856.1:405..2411"
                     /db_xref="GeneID:104055794"
ORIGIN      
        1 maalapprqa vgaaprspps mevhevdhgl isqlladsee tlssctekmq spaqyswsad
       61 wsfwlsssty kyrseefkrq fshlpdserl ivdyacalqk dillqgrlyl senwlcfhsn
      121 ifrwettisi alkditfmtk ektarlipna iqiatkgekf fftsfsardr sylsifrlwq
      181 nvlldkrltk qefwqlvhqs ygselglnse emesfhssse dngqprssic ddpgerdekl
      241 pkmiglvrep mlqaegesln sdalpevees psekqikksp lrsserkpak lvrsrsleks
      301 ldlnenenlp ekssasdsee gvketvsend lygrifinrv fhitadkmfe ilftnshfmq
      361 rflnsrsivd avstpwnrds ngnqlrtlty tvtinnplcg kfttatekqi lhkqsqkgqs
      421 yqvdaevlth dvpyhdyfyt vnrycisrts shkcrlrvsa evkykkqpwg lvksvieknt
      481 wggiqenfkq lesdllleey ainqsiedsg klvalrrrrr tlhrslaesl pkrssqhspg
      541 dmgvesqgsi igrkrdavsr tttiivvmsv fllllvllni tlflklskie haaqslyhvq
      601 lqeesslnis pemvskeeip qydkeqvkhv kgvlrdsiem leqlktslsm lqrsfdhlnr
      661 tqnsktes
//
LOCUS       XP_009555268             643 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Aster-C isoform X3 [Cuculus canorus].
ACCESSION   XP_009555268
VERSION     XP_009555268.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556973.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555268.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..643
                     /product="protein Aster-C isoform X3"
                     /calculated_mol_wt=74067
     Region          61..154
                     /region_name="PH-GRAM_GRAMDC"
                     /note="GRAM domain-containing protein (GRAMDC) Pleckstrin
                     Homology-Glucosyltransferases, Rab-like GTPase activators
                     and Myotubularins (PH-GRAM) domain; cd13220"
                     /db_xref="CDD:275406"
     Region          310..458
                     /region_name="VASt"
                     /note="VAD1 Analog of StAR-related lipid transfer domain;
                     pfam16016"
                     /db_xref="CDD:464975"
     CDS             1..643
                     /gene="GRAMD1C"
                     /coded_by="XM_009556973.2:16..1947"
                     /db_xref="GeneID:104055794"
ORIGIN      
        1 mtlarsplpa sdpqeewpvr mrlpspqklr vneeehimnl ssstykyrse efkrqfshlp
       61 dserlivdya calqkdillq grlylsenwl cfhsnifrwe ttisialkdi tfmtkektar
      121 lipnaiqiat kgekffftsf sardrsylsi frlwqnvlld krltkqefwq lvhqsygsel
      181 glnseemesf hsssedngqp rssicddpge rdeklpkmig lvrepmlqae geslnsdalp
      241 eveespsekq ikksplrsse rkpaklvrsr sleksldlne nenlpekssa sdseegvket
      301 vsendlygri finrvfhita dkmfeilftn shfmqrflns rsivdavstp wnrdsngnql
      361 rtltytvtin nplcgkftta tekqilhkqs qkgqsyqvda evlthdvpyh dyfytvnryc
      421 isrtsshkcr lrvsaevkyk kqpwglvksv iekntwggiq enfkqlesdl lleeyainqs
      481 iedsgklval rrrrrtlhrs laeslpkrss qhspgdmgve sqgsiigrkr davsrtttii
      541 vvmsvfllll vllnitlflk lskiehaaqs lyhvqlqees slnispemvs keeipqydke
      601 qvkhvkgvlr dsiemleqlk tslsmlqrsf dhlnrtqnsk tes
//
LOCUS       XP_053944846             621 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Aster-C isoform X4 [Cuculus canorus].
ACCESSION   XP_053944846
VERSION     XP_053944846.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088871.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..621
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..621
                     /product="protein Aster-C isoform X4"
                     /calculated_mol_wt=71372
     Region          39..132
                     /region_name="PH-GRAM_GRAMDC"
                     /note="GRAM domain-containing protein (GRAMDC) Pleckstrin
                     Homology-Glucosyltransferases, Rab-like GTPase activators
                     and Myotubularins (PH-GRAM) domain; cd13220"
                     /db_xref="CDD:275406"
     Region          288..436
                     /region_name="VASt"
                     /note="VAD1 Analog of StAR-related lipid transfer domain;
                     pfam16016"
                     /db_xref="CDD:464975"
     CDS             1..621
                     /gene="GRAMD1C"
                     /coded_by="XM_054088871.1:16..1881"
                     /db_xref="GeneID:104055794"
ORIGIN      
        1 mvaeklagke ekdenptlss stykyrseef krqfshlpds erlivdyaca lqkdillqgr
       61 lylsenwlcf hsnifrwett isialkditf mtkektarli pnaiqiatkg ekffftsfsa
      121 rdrsylsifr lwqnvlldkr ltkqefwqlv hqsygselgl nseemesfhs ssedngqprs
      181 sicddpgerd eklpkmiglv repmlqaege slnsdalpev eespsekqik ksplrsserk
      241 paklvrsrsl eksldlnene nlpekssasd seegvketvs endlygrifi nrvfhitadk
      301 mfeilftnsh fmqrflnsrs ivdavstpwn rdsngnqlrt ltytvtinnp lcgkfttate
      361 kqilhkqsqk gqsyqvdaev lthdvpyhdy fytvnrycis rtsshkcrlr vsaevkykkq
      421 pwglvksvie kntwggiqen fkqlesdlll eeyainqsie dsgklvalrr rrrtlhrsla
      481 eslpkrssqh spgdmgvesq gsiigrkrda vsrtttiivv msvfllllvl lnitlflkls
      541 kiehaaqsly hvqlqeessl nispemvske eipqydkeqv khvkgvlrds iemleqlkts
      601 lsmlqrsfdh lnrtqnskte s
//
LOCUS       XP_053944855             613 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Aster-C isoform X5 [Cuculus canorus].
ACCESSION   XP_053944855
VERSION     XP_053944855.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088880.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..613
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..613
                     /product="protein Aster-C isoform X5"
                     /calculated_mol_wt=70607
     Region          31..124
                     /region_name="PH-GRAM_GRAMDC"
                     /note="GRAM domain-containing protein (GRAMDC) Pleckstrin
                     Homology-Glucosyltransferases, Rab-like GTPase activators
                     and Myotubularins (PH-GRAM) domain; cd13220"
                     /db_xref="CDD:275406"
     Region          280..428
                     /region_name="VASt"
                     /note="VAD1 Analog of StAR-related lipid transfer domain;
                     pfam16016"
                     /db_xref="CDD:464975"
     CDS             1..613
                     /gene="GRAMD1C"
                     /coded_by="XM_054088880.1:16..1857"
                     /db_xref="GeneID:104055794"
ORIGIN      
        1 mpvekkhkkl ssstykyrse efkrqfshlp dserlivdya calqkdillq grlylsenwl
       61 cfhsnifrwe ttisialkdi tfmtkektar lipnaiqiat kgekffftsf sardrsylsi
      121 frlwqnvlld krltkqefwq lvhqsygsel glnseemesf hsssedngqp rssicddpge
      181 rdeklpkmig lvrepmlqae geslnsdalp eveespsekq ikksplrsse rkpaklvrsr
      241 sleksldlne nenlpekssa sdseegvket vsendlygri finrvfhita dkmfeilftn
      301 shfmqrflns rsivdavstp wnrdsngnql rtltytvtin nplcgkftta tekqilhkqs
      361 qkgqsyqvda evlthdvpyh dyfytvnryc isrtsshkcr lrvsaevkyk kqpwglvksv
      421 iekntwggiq enfkqlesdl lleeyainqs iedsgklval rrrrrtlhrs laeslpkrss
      481 qhspgdmgve sqgsiigrkr davsrtttii vvmsvfllll vllnitlflk lskiehaaqs
      541 lyhvqlqees slnispemvs keeipqydke qvkhvkgvlr dsiemleqlk tslsmlqrsf
      601 dhlnrtqnsk tes
//
LOCUS       XP_009563417             372 aa            linear   VRT 09-MAR-2023
DEFINITION  serine protease 23 [Cuculus canorus].
ACCESSION   XP_009563417
VERSION     XP_009563417.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565122.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009563417.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..372
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..372
                     /product="serine protease 23"
                     /calculated_mol_wt=41859
     Region          149..362
                     /region_name="eMpr"
                     /note="V8-like Glu-specific endopeptidase
                     [Posttranslational modification, protein turnover,
                     chaperones]; COG3591"
                     /db_xref="CDD:442810"
     CDS             1..372
                     /gene="PRSS23"
                     /coded_by="XM_009565122.2:180..1298"
                     /db_xref="GeneID:104062979"
ORIGIN      
        1 maglstlill lcaaryvmss sshwkptwps yrvpvilpqs tlnldkpqfd aearlevvsp
       61 cgpachkssp lptyeevkhy lsyetlyang sltetevgiy ilsnggdgsq gksrtkrqiy
      121 gydsrfsifg kdfllnypfs tsvklstgct gtlvaekhvl taahcihdgk syvkgaqklr
      181 vgflkpklkd gskganitns vmpekmkfqw irvkrthvpk gwikgnandi gmdydyalle
      241 lkkphkrkfm kigvspparh lpggrihfsg ydndrpgnlv yrfcdvkdet ydllyqqcda
      301 qpgasgsgvy vrmwkrqnhk werkiigifs ghqwvdmngt pqdfnvavri tplkyaqicy
      361 wikgnyldcr eg
//
LOCUS       XP_053944869             372 aa            linear   VRT 09-MAR-2023
DEFINITION  serine protease 23 [Cuculus canorus].
ACCESSION   XP_053944869
VERSION     XP_053944869.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088894.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..372
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..372
                     /product="serine protease 23"
                     /calculated_mol_wt=41859
     Region          149..362
                     /region_name="eMpr"
                     /note="V8-like Glu-specific endopeptidase
                     [Posttranslational modification, protein turnover,
                     chaperones]; COG3591"
                     /db_xref="CDD:442810"
     CDS             1..372
                     /gene="PRSS23"
                     /coded_by="XM_054088894.1:248..1366"
                     /db_xref="GeneID:104062979"
ORIGIN      
        1 maglstlill lcaaryvmss sshwkptwps yrvpvilpqs tlnldkpqfd aearlevvsp
       61 cgpachkssp lptyeevkhy lsyetlyang sltetevgiy ilsnggdgsq gksrtkrqiy
      121 gydsrfsifg kdfllnypfs tsvklstgct gtlvaekhvl taahcihdgk syvkgaqklr
      181 vgflkpklkd gskganitns vmpekmkfqw irvkrthvpk gwikgnandi gmdydyalle
      241 lkkphkrkfm kigvspparh lpggrihfsg ydndrpgnlv yrfcdvkdet ydllyqqcda
      301 qpgasgsgvy vrmwkrqnhk werkiigifs ghqwvdmngt pqdfnvavri tplkyaqicy
      361 wikgnyldcr eg
//
LOCUS       XP_053944876             372 aa            linear   VRT 09-MAR-2023
DEFINITION  serine protease 23 [Cuculus canorus].
ACCESSION   XP_053944876
VERSION     XP_053944876.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088901.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..372
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..372
                     /product="serine protease 23"
                     /calculated_mol_wt=41859
     Region          149..362
                     /region_name="eMpr"
                     /note="V8-like Glu-specific endopeptidase
                     [Posttranslational modification, protein turnover,
                     chaperones]; COG3591"
                     /db_xref="CDD:442810"
     CDS             1..372
                     /gene="PRSS23"
                     /coded_by="XM_054088901.1:252..1370"
                     /db_xref="GeneID:104062979"
ORIGIN      
        1 maglstlill lcaaryvmss sshwkptwps yrvpvilpqs tlnldkpqfd aearlevvsp
       61 cgpachkssp lptyeevkhy lsyetlyang sltetevgiy ilsnggdgsq gksrtkrqiy
      121 gydsrfsifg kdfllnypfs tsvklstgct gtlvaekhvl taahcihdgk syvkgaqklr
      181 vgflkpklkd gskganitns vmpekmkfqw irvkrthvpk gwikgnandi gmdydyalle
      241 lkkphkrkfm kigvspparh lpggrihfsg ydndrpgnlv yrfcdvkdet ydllyqqcda
      301 qpgasgsgvy vrmwkrqnhk werkiigifs ghqwvdmngt pqdfnvavri tplkyaqicy
      361 wikgnyldcr eg
//
LOCUS       XP_053944892             259 aa            linear   VRT 09-MAR-2023
DEFINITION  mediator of RNA polymerase II transcription subunit 4 [Cuculus
            canorus].
ACCESSION   XP_053944892
VERSION     XP_053944892.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088917.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..259
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..259
                     /product="mediator of RNA polymerase II transcription
                     subunit 4"
                     /calculated_mol_wt=28464
     Region          53..>178
                     /region_name="Med4"
                     /note="Vitamin-D-receptor interacting Mediator subunit 4;
                     pfam10018"
                     /db_xref="CDD:401849"
     CDS             1..259
                     /gene="MED4"
                     /coded_by="XM_054088917.1:72..851"
                     /db_xref="GeneID:104058223"
ORIGIN      
        1 maaaataagg ersstrdrll aaledlella relieilais rnqklpqpge esqilelliq
       61 rdgefqelmk laveqgkihh emqllekvve krdndiqqlq kqlkeaehil atavyqakek
      121 lksiekarkg aisseeiiky ahrisasnav capltwvpgd prrpyptdle mrsgllgqmn
      181 npstngvngh lpgdalaagr lpdvlapqyp wqssdmsmnm lppnhsndfm leppghnken
      241 eddvevmstd ssssssdsd
//
LOCUS       XP_053944900             213 aa            linear   VRT 09-MAR-2023
DEFINITION  nucleotide triphosphate diphosphatase NUDT15 [Cuculus canorus].
ACCESSION   XP_053944900
VERSION     XP_053944900.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088925.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..213
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..213
                     /product="nucleotide triphosphate diphosphatase NUDT15"
                     /calculated_mol_wt=22899
     Region          61..190
                     /region_name="NUDIX_MTH2_Nudt15"
                     /note="MutT homolog 2; cd04678"
                     /db_xref="CDD:467561"
     CDS             1..213
                     /gene="NUDT15"
                     /coded_by="XM_054088925.1:320..961"
                     /db_xref="GeneID:128854664"
ORIGIN      
        1 mgarpetlws arpllprrss lrprppsdva aargtralcp tcpgrresga vmgeaatppr
       61 pgigvgvvvt saahpgcvll gkrkgpvgag thqlpgghle fgeslaecaa retleeaalp
      121 lrnvrfascv navcaaaryh yvtvlmkgea epgaeprnce pdknegwewv kwdefppadq
      181 lfwalrclre qgynpfteel dhlkgytgsh qlt
//
LOCUS       XP_053944910             244 aa            linear   VRT 09-MAR-2023
DEFINITION  MICOS complex subunit MIC19 isoform X1 [Cuculus canorus].
ACCESSION   XP_053944910
VERSION     XP_053944910.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088935.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..244
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..244
                     /product="MICOS complex subunit MIC19 isoform X1"
                     /calculated_mol_wt=28038
     Region          30..190
                     /region_name="MIC19_MIC25"
                     /note="MICOS complex subunit MIC19/MIC25; pfam05300"
                     /db_xref="CDD:461615"
     CDS             1..244
                     /gene="CHCHD3"
                     /coded_by="XM_054088935.1:76..810"
                     /db_xref="GeneID:104061458"
ORIGIN      
        1 mggggsstrr vtfeadenen itvvkgvrls dsvidrmkep sspggrpqsq qrsasgaand
       61 eelkkriaee lalerarrds eaqkrrlrqe qmyvrdefgk lleqerissn ehltrailre
      121 raateeerqk aqrfdiekka rqleekdrel kkhdayykeq larleersaq fykvtteqyq
      181 kaadevsarf kryeshpica dlqdkilqcy rqhaqetlsc salasqylhc vntakqqsml
      241 grgg
//
LOCUS       XP_053944918             243 aa            linear   VRT 09-MAR-2023
DEFINITION  MICOS complex subunit MIC19 isoform X2 [Cuculus canorus].
ACCESSION   XP_053944918
VERSION     XP_053944918.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088943.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..243
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..243
                     /product="MICOS complex subunit MIC19 isoform X2"
                     /calculated_mol_wt=27910
     Region          30..190
                     /region_name="MIC19_MIC25"
                     /note="MICOS complex subunit MIC19/MIC25; pfam05300"
                     /db_xref="CDD:461615"
     CDS             1..243
                     /gene="CHCHD3"
                     /coded_by="XM_054088943.1:76..807"
                     /db_xref="GeneID:104061458"
ORIGIN      
        1 mggggsstrr vtfeadenen itvvkgvrls dsvidrmkep sspggrpqsq qrsasgaand
       61 eelkkriaee lalerarrds eaqkrrlrqe qmyvrdefgk lleqerissn ehltrailre
      121 raateeerqk aqrfdiekka rqleekdrel kkhdayykeq larleersaq fykvtteqyq
      181 kaadevsarf kryeshpica dlqdkilqcy rqhaqetlsc salasqylhc vntakqsmlg
      241 rgg
//
LOCUS       XP_009561700             239 aa            linear   VRT 09-MAR-2023
DEFINITION  MICOS complex subunit MIC19 isoform X3 [Cuculus canorus].
ACCESSION   XP_009561700
VERSION     XP_009561700.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563405.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561700.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..239
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..239
                     /product="MICOS complex subunit MIC19 isoform X3"
                     /calculated_mol_wt=27425
     Region          30..185
                     /region_name="MIC19_MIC25"
                     /note="MICOS complex subunit MIC19/MIC25; pfam05300"
                     /db_xref="CDD:461615"
     CDS             1..239
                     /gene="CHCHD3"
                     /coded_by="XM_009563405.2:76..795"
                     /db_xref="GeneID:104061458"
ORIGIN      
        1 mggggsstrr vtfeadenen itvvkgvrls dsvidrmkep sspggrpqsq qrsasgaand
       61 eelkkriaee lalerarrds eaqkrrlrqe qmyvrdefgk lleqerissn ehltrailre
      121 raateeerqk aqrfarqlee kdrelkkhda yykeqlarle ersaqfykvt teqyqkaade
      181 vsarfkryes hpicadlqdk ilqcyrqhaq etlscsalas qylhcvntak qqsmlgrgg
//
LOCUS       XP_053944934             238 aa            linear   VRT 09-MAR-2023
DEFINITION  MICOS complex subunit MIC19 isoform X4 [Cuculus canorus].
ACCESSION   XP_053944934
VERSION     XP_053944934.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088959.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..238
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..238
                     /product="MICOS complex subunit MIC19 isoform X4"
                     /calculated_mol_wt=27297
     Region          30..185
                     /region_name="MIC19_MIC25"
                     /note="MICOS complex subunit MIC19/MIC25; pfam05300"
                     /db_xref="CDD:461615"
     CDS             1..238
                     /gene="CHCHD3"
                     /coded_by="XM_054088959.1:76..792"
                     /db_xref="GeneID:104061458"
ORIGIN      
        1 mggggsstrr vtfeadenen itvvkgvrls dsvidrmkep sspggrpqsq qrsasgaand
       61 eelkkriaee lalerarrds eaqkrrlrqe qmyvrdefgk lleqerissn ehltrailre
      121 raateeerqk aqrfarqlee kdrelkkhda yykeqlarle ersaqfykvt teqyqkaade
      181 vsarfkryes hpicadlqdk ilqcyrqhaq etlscsalas qylhcvntak qsmlgrgg
//
LOCUS       XP_053944943             350 aa            linear   VRT 09-MAR-2023
DEFINITION  twinfilin-1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053944943
VERSION     XP_053944943.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088968.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..350
                     /product="twinfilin-1 isoform X1"
                     /calculated_mol_wt=39821
     Region          4..142
                     /region_name="ADF_Twf-N_like"
                     /note="N-terminal ADF domain of twinfilin and related
                     proteins; cd11285"
                     /db_xref="CDD:200441"
     Site            5..6
                     /site_type="other"
                     /note="putative G-actin interface [polypeptide binding]"
                     /db_xref="CDD:200441"
     Region          176..311
                     /region_name="ADF_Twf-C_like"
                     /note="C-terminal ADF domain of twinfilin and related
                     proteins; cd11284"
                     /db_xref="CDD:200440"
     Site            order(176..180,210,257,259,262,266..267,269..271,273..274,
                     276,294,296,298)
                     /site_type="other"
                     /note="G-actin binding interface [polypeptide binding]"
                     /db_xref="CDD:200440"
     Site            order(267,299,302)
                     /site_type="other"
                     /note="putative F-actin interface [polypeptide binding]"
                     /db_xref="CDD:200440"
     CDS             1..350
                     /gene="TWF1"
                     /coded_by="XM_054088968.1:118..1170"
                     /db_xref="GeneID:104062420"
ORIGIN      
        1 mshqtgiqas gsvkdtfvga rngqyrllki vidneqlvvg ssrrpvgswe kdydsfvlpl
       61 ledkqpcyil yrldsqnaqg yewifiawsp dhspvrqkml yaatratlkk efggghikde
      121 vfgtvqddvs lngykkylis qsspapltaa eeelrqikin evqtdvgvdt khqtlqgvaf
      181 piakeaiqal eklknkklny vqlqidmkne tiilantlht eikdlpkrip kdaaryhffl
      241 ykhahegdyl esivfiysmp gytcsirerm lyssckspll eiverqlwmq iirkieidng
      301 deltadflye evhpkqhahk qsfakpkgpa gkrgirrlir gpaetetpsd
//
LOCUS       XP_053944948             315 aa            linear   VRT 09-MAR-2023
DEFINITION  twinfilin-1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053944948
VERSION     XP_053944948.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088973.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..315
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..315
                     /product="twinfilin-1 isoform X2"
                     /calculated_mol_wt=35917
     Region          4..125
                     /region_name="ADF_Twf-N_like"
                     /note="N-terminal ADF domain of twinfilin and related
                     proteins; cd11285"
                     /db_xref="CDD:200441"
     Site            5..6
                     /site_type="other"
                     /note="putative G-actin interface [polypeptide binding]"
                     /db_xref="CDD:200441"
     Region          141..276
                     /region_name="ADF_Twf-C_like"
                     /note="C-terminal ADF domain of twinfilin and related
                     proteins; cd11284"
                     /db_xref="CDD:200440"
     Site            order(141..145,175,222,224,227,231..232,234..236,238..239,
                     241,259,261,263)
                     /site_type="other"
                     /note="G-actin binding interface [polypeptide binding]"
                     /db_xref="CDD:200440"
     Site            order(232,264,267)
                     /site_type="other"
                     /note="putative F-actin interface [polypeptide binding]"
                     /db_xref="CDD:200440"
     CDS             1..315
                     /gene="TWF1"
                     /coded_by="XM_054088973.1:118..1065"
                     /db_xref="GeneID:104062420"
ORIGIN      
        1 mshqtgiqas gsvkdtfvga rngqyrllki vidneqlvvg ssrrpvgswe kdydsfvlpl
       61 ledkqpcyil yrldsqnaqg yewifiawsp dhspvrqkml yaatratlkk efggghikde
      121 vfgtvqvqtd vgvdtkhqtl qgvafpiake aiqaleklkn kklnyvqlqi dmknetiila
      181 ntlhteikdl pkripkdaar yhfflykhah egdylesivf iysmpgytcs irermlyssc
      241 ksplleiver qlwmqiirki eidngdelta dflyeevhpk qhahkqsfak pkgpagkrgi
      301 rrlirgpaet etpsd
//
LOCUS       XP_053944959             487 aa            linear   VRT 09-MAR-2023
DEFINITION  methionine aminopeptidase 2 [Cuculus canorus].
ACCESSION   XP_053944959
VERSION     XP_053944959.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088984.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..487
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..487
                     /product="methionine aminopeptidase 2"
                     /calculated_mol_wt=53594
     Region          <121..487
                     /region_name="PTZ00053"
                     /note="methionine aminopeptidase 2; Provisional"
                     /db_xref="CDD:240246"
     CDS             1..487
                     /gene="METAP2"
                     /coded_by="XM_054088984.1:233..1696"
                     /db_xref="GeneID:104055169"
ORIGIN      
        1 magvgragsa aaeeekqhln gellpdtedk dgeagdaagl gaedgakkkr kkkkkgkagp
       61 lgqemdkeme galgdvakql dkqaleekek ddddedgege gdgatgkkkk kkkkkkgskv
      121 qtdppsipic dlfpnnifpk geeceypptq dgrtaawrtt seekkaldqa seeiwndfre
      181 aaeahrqvrk yvmswikpgm tmieicekle dcsrkliken glnaglafpt gcslnncaah
      241 ytpnagdptv lqyddickid fgthisgrii dcaftvtfnp kydrlleavk datntgikca
      301 gidvrlcdvg eaiqevmesy eveidgktyq vkpirnlngh sigpyrihag ktvpivkgge
      361 atrmeegevy aietfgstgk gvvhddmecs hymknfdvgh vpirlprakh llnvinenfg
      421 tlafcrrwld rlgeskylma lknlcdlgiv dpypplcdik gsytaqfeht illrptckev
      481 vsrgddy
//
LOCUS       XP_053944970            4301 aa            linear   VRT 09-MAR-2023
DEFINITION  cytoplasmic dynein 2 heavy chain 1 [Cuculus canorus].
ACCESSION   XP_053944970
VERSION     XP_053944970.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054088995.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4301
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..4301
                     /product="cytoplasmic dynein 2 heavy chain 1"
                     /calculated_mol_wt=491513
     Region          195..636
                     /region_name="DHC_N1"
                     /note="Dynein heavy chain, N-terminal region 1; pfam08385"
                     /db_xref="CDD:462457"
     Region          1115..1515
                     /region_name="DHC_N2"
                     /note="Dynein heavy chain, N-terminal region 2; pfam08393"
                     /db_xref="CDD:462462"
     Region          1318..4010
                     /region_name="DYN1"
                     /note="Dynein, heavy chain [Cytoskeleton]; COG5245"
                     /db_xref="CDD:227570"
     Region          1647..1982
                     /region_name="AAA_6"
                     /note="Hydrolytic ATP binding site of dynein motor region;
                     pfam12774"
                     /db_xref="CDD:463697"
     Region          4005..4298
                     /region_name="Dynein_C"
                     /note="Dynein heavy chain C-terminal domain; pfam18199"
                     /db_xref="CDD:465677"
     CDS             1..4301
                     /gene="DYNC2H1"
                     /coded_by="XM_054088995.1:104..13009"
                     /db_xref="GeneID:104064704"
ORIGIN      
        1 maeegdrrkr fisataanff glepaqavgl rscprlsafl ddgnefllvv rrsggslsas
       61 nqieatdskn nvlvffklrp dvitednlhs nilvssmlds pintlyqavr qvfapvllkd
      121 erwsktfdpk lqkllselea glstvlrrsd pnytgtkfse ddvrailtpt defqfwveca
      181 rhgskwcske rashfkdlfe diakdyynld slslfevvdl vettkdtvdg vwrqtehdpy
      241 pqprmhnlld viggslgryv qrklaalnlw edafysiken lkagiliceq wvsacdyltg
      301 qlwqrytlhp wqnekyfpes laklgkrlde vltvrtlhek ltfflpageq nalhlaqafe
      361 pfaglnpvhy npyteplwka avsqyeriia paeqkiaskl kkfiaeiqds pqqllqtfqk
      421 ykelikhpni skellferet llarlqdyvk dyqtdfetrc hgvpgdvsgp lsgknlsevv
      481 nnivwvqqle lkvddatkla eallsdlpgc qafhrsadsf leqlkayeqe qfddwsrniq
      541 selsnpksgl ciqanspime ldhvsgtlsi lysdrlvtll revrqlaalg faipaniqrv
      601 antaqkfckq avilkqvahf ynsidqqmie sqkpmmlqsa lafeqiikhs ksgpggkaqi
      661 twdnprelev yiqklqaaae rlstenrklr kwhtnfiekv illmnvdllr qqqrwkdglq
      721 elrtaftslq sqgfkscdmr awrqhwnhql ykalehqyqm glealnenlp einidltfkq
      781 grlqfrppfe evraryyrem krfisipnqf rgvseaeees iftvmterna ngfltafgka
      841 edlfrrltdv snqfkewivi gqvdmetlvk thlsskqdwe knfkalkvrg keaerlpsti
      901 ridcltvncn pvktviddfi qklydvlvis lrksiqahlc dvssfltdam etlvirpqtv
      961 eeiaednaky lnlreqkegv fllfqeaedk nkllrtvaga gldtlsnlra twdkfelmme
     1021 shqlmiteqi emmkgnvish invylqdlek fkarwdqlkp gddvietgdq dvleksaqii
     1081 kekkkefdel etvkekliee chhfkldepd fslsevvcqd ikncaevwal yeefyqgfqe
     1141 kakedwitfr sktylfeefl fnwhdkmrkm gehtvmtakl qkevdkykmv ipllkyvrge
     1201 hlspdhwldl frilglprgt tlegllfgdl lkvtdtiidk amelkdlncr aqgevtirea
     1261 lrelelwgvg avftltdyed sqgrtirlik dwkdivnqvg dhrcllqslk dspyykgfed
     1321 kvsiwekkla eldeylqnln qiqrkwvyle pifgrgslpk eqarfnrvde dfrsimsdik
     1381 ndnritslna rtgirntlit lldqlqrcqr slnefleekr safprfyfig dddlleilgq
     1441 stnplviqsh lkklfagins vsfdeefkyi iamksveget vplrnkvlls ndvevwlnsl
     1501 alemketlkv mlidcvdagk ksqgsidpsl fpsqilslae qiqftedves aikdhnlqql
     1561 elelmakleh ytsidtsied tgstesgile lklkalildi vhnidvvkql nqarvhsvqd
     1621 wawkkqlrfy mkdqkcyvqm vdaelqytye yqgnspklvy tpltdkcylt ltqamkmglg
     1681 gnpygpagtg ktesvkalgg llgrqvlvfn cdegidvksm grifvglvkc gawgcfdefn
     1741 rleeavlsav smqiqtiqha lkkhspvcem lgkkvemdhn sgifitlnpa gkgyggrqkl
     1801 pdnlkqlfrp vamthpdnel iaevilyseg fkdakilgrk lvaifnlare fltpqqhydw
     1861 glralktvlr gcgsllhqmk kseakqeike shmvvqalrl ntmskltfad carfdalvkd
     1921 vfpgidfkdv eyaelttalq qvfeeanlei isaqikkale lyeqlrqrmg vvivgpsgag
     1981 kstlwrmlka algktgkvvk qytmnpkamp rhqflghidm dtrewsdgvl tnsarqvvre
     2041 prditswiic dgdidpewie slnsvlddnr lltmpsgeri qfgsnvnfif ethdlscasp
     2101 atisrmgmif lsdedtdlns likswlrsqp eecrynlenw igdyfekaln wvvkkndsvv
     2161 etslvgtvmn glshlhgctd rgqfiinllr glggnlnmks rqefaeeifs waresppdpt
     2221 kpldtyydtd tghlmlyhlk kpekltaddf snpqtlpviq tpdmqrgldy frpwldfnyk
     2281 qpfllvgpeg cgkgmllhya fsqlrstqia tihcsaqtts qhllqklsqt civistntgr
     2341 vyrpkdcerl vlylkdinlp kpdkwgtstl vaflqqvlty qgfydenlew vgleniqiva
     2401 smsaggtlgr hkltsrftsi vrlcaidype rdqlqaiysa ylepvlqknl tnhrvwgslp
     2461 nihqlagsmv qvyeqvrakf tvddhshylf tpciltqwvl glfrydlagg sltqtadyvl
     2521 eivayearrl frdkivgmke lhvfdnvlmk vfqddwgsdv ldntadvfyv twgacqeafv
     2581 tpgqglpphg rplgrlnstd lkdiiqkgii hygrdkkeie illfhevlsy mskvdrvlsf
     2641 pggslllagr sgvgrrtvts lvshmhgavl itpkisrgye lkqfrndlky vmelagieaq
     2701 qvvllledyq ivhstflemi nsllssgevp glykveelep llsplkdqas qdgftgpifn
     2761 yftyriqqnl hvvlimdstn inftincesn palykkcqvl wmetwsensm rkipemllcd
     2821 sdeqektgkt nkahkqkhsg dsdflksflt ihesckmyga tpsrymtflr iystinnskr
     2881 qelikrqnhl qagvsklnea kvlvdelnrk ageqsillkt kqdeadaalq eitvsmqnas
     2941 dqktemeklk hriaeeaaei eerkrkiede lkevqplvne aklavgnikp eslseirslr
     3001 mppdiirdil egvlrlmgif dtswvsmksf lakrgvredi atfdarnipk eiresveell
     3061 srnrtsfdpk nakrasaaaa plaawvnanv qyshvleriq plekekagle anlkktegrk
     3121 rkledllnsv gqkvselkek fqsrtteaak leaelskaqk tlkaaevlin qldrehkrws
     3181 tqvseiteel atlpkraqla aafitylsaa pedqrknsle ewtksaglek fdlrrflcte
     3241 seelvwkseg lpsddlsien alvilqskvc pflidpsfra tewlkthlke srlevinqqd
     3301 tnfltalela vrfgktliiq emdgvepvly pllrkdliaq gpryavqige ktidyneefc
     3361 lflstrnpnp fippdassiv tevnftttgs glrgqllalt iqhekpdlee qktkllqqee
     3421 ekkiqlakle eslletlats qgnilenkdl ieslnqtkas saviqeslae shrlqsfldk
     3481 erdaylplae saskmyfiis dlskinnmyr fslaaflrlf qrallseqvs sntedriksl
     3541 igslkhtvye yvcrclfkad qlmftlhfvr gmhpelfqen ewetftgvii gdtirksdsq
     3601 rsirdqipsw ieqdrawava slkislpgly qtlcfedesl wrtfsrssvc eqdfpstivk
     3661 rislfqqvlv vqavrpdrlq samalfackt lgikelspsp lslkrlyket leiepiliii
     3721 spgadpsqel qelagiernt ecyhqiamgq gqadlaiqtl kecarngewl clknlhlvts
     3781 wlpvlekeln mlqpqpnfrl wlttevhpkf tpillqsslk ityeappglk knllrtyesw
     3841 tpeqiskkgn lsrahslfcl awfhavcqer rnyipqgwtk fyefslsdlr agfdiidqlf
     3901 egskdfqwef vhglfenaiy ggrvdnyfdm rvlrsyleql fnsqvignln argkkmtsfp
     3961 ysinlpnscs ildyrhiien lpeddkpdff glpaniarss qrmissqvis qlrilsrsvt
     4021 sgckfdreiw stelspvlsl wkklnqnsnl ihqkvsppve qqgspilsfi tleqfnairl
     4081 vqnvhqslas lskvirgtsl lssevqrlas allnqkcpla wqskwegped plqylrslva
     4141 ralaiqnwve kaekqkllsd tldlselfhp dtflnalrqe tarvmscsvd slkftaswkg
     4201 riqegklqvk isglqlegcs fdgnrlsenl hdspsvssvl pcymawipqd sygpyspeec
     4261 islpvytsme rdrvvtnidv pcggnqdqwi qcgaalflkn q
//
LOCUS       XP_053944980             230 aa            linear   VRT 09-MAR-2023
DEFINITION  spliceosome-associated protein CWC15 homolog [Cuculus canorus].
ACCESSION   XP_053944980
VERSION     XP_053944980.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054089005.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..230
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..230
                     /product="spliceosome-associated protein CWC15 homolog"
                     /calculated_mol_wt=26501
     Region          1..229
                     /region_name="Cwf_Cwc_15"
                     /note="Cwf15/Cwc15 cell cycle control protein; pfam04889"
                     /db_xref="CDD:428176"
     CDS             1..230
                     /gene="CWC15"
                     /coded_by="XM_054089005.1:113..805"
                     /db_xref="GeneID:104064084"
ORIGIN      
        1 mttaarptfe parggrgkge gdlsqlskqy ssrdlpshtk ikyrqatqda peevrnrdfr
       61 releererva areknrdrpt rehttsssvs kkprldqipa anldaddplt deddededle
      121 dsddddtaal laelekikke raeeqarkeq eqkaeeerir menilsgnpl lnltgpaqpq
      181 anfkvkrrwd ddvvfkncak gidetkkdkk fvndtlrsef hkkfmekyik
//
LOCUS       XP_053905542             230 aa            linear   VRT 09-MAR-2023
DEFINITION  spliceosome-associated protein CWC15 homolog [Cuculus canorus].
ACCESSION   XP_053905542
VERSION     XP_053905542.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049567.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..230
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..230
                     /product="spliceosome-associated protein CWC15 homolog"
                     /calculated_mol_wt=26501
     Region          1..229
                     /region_name="Cwf_Cwc_15"
                     /note="Cwf15/Cwc15 cell cycle control protein; pfam04889"
                     /db_xref="CDD:428176"
     CDS             1..230
                     /gene="CWC15"
                     /coded_by="XM_054049567.1:101..793"
                     /db_xref="GeneID:104064084"
ORIGIN      
        1 mttaarptfe parggrgkge gdlsqlskqy ssrdlpshtk ikyrqatqda peevrnrdfr
       61 releererva areknrdrpt rehttsssvs kkprldqipa anldaddplt deddededle
      121 dsddddtaal laelekikke raeeqarkeq eqkaeeerir menilsgnpl lnltgpaqpq
      181 anfkvkrrwd ddvvfkncak gidetkkdkk fvndtlrsef hkkfmekyik
//
LOCUS       XP_053905557             303 aa            linear   VRT 09-MAR-2023
DEFINITION  protein mono-ADP-ribosyltransferase PARP12-like [Cuculus canorus].
ACCESSION   XP_053905557
VERSION     XP_053905557.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049582.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..303
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..303
                     /product="protein mono-ADP-ribosyltransferase PARP12-like"
                     /calculated_mol_wt=35607
     Region          5..77
                     /region_name="WWE"
                     /note="WWE domain; pfam02825"
                     /db_xref="CDD:460715"
     Region          178..294
                     /region_name="TCCD_inducible_PARP_like"
                     /note="Poly(ADP-ribose) polymerases catalyse the covalent
                     attachment of ADP-ribose units from NAD+ to itself and to
                     a limited number of other DNA binding proteins, which
                     decreases their affinity for DNA. Poly(ADP-ribose)
                     polymerase is a regulatory component...; cd01439"
                     /db_xref="CDD:238719"
     Site            order(180..184,187,191,195..197,199,212..214,224,277)
                     /site_type="other"
                     /note="nad+ binding pocket [chemical binding]"
                     /db_xref="CDD:238719"
     CDS             1..303
                     /gene="LOC128849189"
                     /coded_by="XM_054049582.1:232..1143"
                     /db_xref="GeneID:128849189"
ORIGIN      
        1 meygwywldd skqwieygee hpdhchatvt seilekefla dssgsvvfra gsqkyvldfe
       61 dmvqrnldyq terkverrqk cllsedrprr rqnttlsnsv yprqwdrsal pdigfelvev
      121 seiskeyrki krlfektmkd ylihrlrriq nptlwqvfqw qkeqmkklnt sksvdkrllf
      181 hgtnpshmsa iceqnfdwri cgihgtmygk gsyfardasy ahqycssnsg vysmfvahvl
      241 vgdfvqgnae ysrppprhgn snrlydscvn dptdpsifvi fekhqiypay ileyssegqc
      301 mil
//
LOCUS       XP_053905564             303 aa            linear   VRT 09-MAR-2023
DEFINITION  protein mono-ADP-ribosyltransferase PARP12-like [Cuculus canorus].
ACCESSION   XP_053905564
VERSION     XP_053905564.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049589.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..303
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..303
                     /product="protein mono-ADP-ribosyltransferase PARP12-like"
                     /calculated_mol_wt=35607
     Region          5..77
                     /region_name="WWE"
                     /note="WWE domain; pfam02825"
                     /db_xref="CDD:460715"
     Region          178..294
                     /region_name="TCCD_inducible_PARP_like"
                     /note="Poly(ADP-ribose) polymerases catalyse the covalent
                     attachment of ADP-ribose units from NAD+ to itself and to
                     a limited number of other DNA binding proteins, which
                     decreases their affinity for DNA. Poly(ADP-ribose)
                     polymerase is a regulatory component...; cd01439"
                     /db_xref="CDD:238719"
     Site            order(180..184,187,191,195..197,199,212..214,224,277)
                     /site_type="other"
                     /note="nad+ binding pocket [chemical binding]"
                     /db_xref="CDD:238719"
     CDS             1..303
                     /gene="LOC128849189"
                     /coded_by="XM_054049589.1:1831..2742"
                     /db_xref="GeneID:128849189"
ORIGIN      
        1 meygwywldd skqwieygee hpdhchatvt seilekefla dssgsvvfra gsqkyvldfe
       61 dmvqrnldyq terkverrqk cllsedrprr rqnttlsnsv yprqwdrsal pdigfelvev
      121 seiskeyrki krlfektmkd ylihrlrriq nptlwqvfqw qkeqmkklnt sksvdkrllf
      181 hgtnpshmsa iceqnfdwri cgihgtmygk gsyfardasy ahqycssnsg vysmfvahvl
      241 vgdfvqgnae ysrppprhgn snrlydscvn dptdpsifvi fekhqiypay ileyssegqc
      301 mil
//
LOCUS       XP_053905570             303 aa            linear   VRT 09-MAR-2023
DEFINITION  protein mono-ADP-ribosyltransferase PARP12-like [Cuculus canorus].
ACCESSION   XP_053905570
VERSION     XP_053905570.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049595.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..303
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..303
                     /product="protein mono-ADP-ribosyltransferase PARP12-like"
                     /calculated_mol_wt=35607
     Region          5..77
                     /region_name="WWE"
                     /note="WWE domain; pfam02825"
                     /db_xref="CDD:460715"
     Region          178..294
                     /region_name="TCCD_inducible_PARP_like"
                     /note="Poly(ADP-ribose) polymerases catalyse the covalent
                     attachment of ADP-ribose units from NAD+ to itself and to
                     a limited number of other DNA binding proteins, which
                     decreases their affinity for DNA. Poly(ADP-ribose)
                     polymerase is a regulatory component...; cd01439"
                     /db_xref="CDD:238719"
     Site            order(180..184,187,191,195..197,199,212..214,224,277)
                     /site_type="other"
                     /note="nad+ binding pocket [chemical binding]"
                     /db_xref="CDD:238719"
     CDS             1..303
                     /gene="LOC128849189"
                     /coded_by="XM_054049595.1:397..1308"
                     /db_xref="GeneID:128849189"
ORIGIN      
        1 meygwywldd skqwieygee hpdhchatvt seilekefla dssgsvvfra gsqkyvldfe
       61 dmvqrnldyq terkverrqk cllsedrprr rqnttlsnsv yprqwdrsal pdigfelvev
      121 seiskeyrki krlfektmkd ylihrlrriq nptlwqvfqw qkeqmkklnt sksvdkrllf
      181 hgtnpshmsa iceqnfdwri cgihgtmygk gsyfardasy ahqycssnsg vysmfvahvl
      241 vgdfvqgnae ysrppprhgn snrlydscvn dptdpsifvi fekhqiypay ileyssegqc
      301 mil
//
LOCUS       XP_053905580             218 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptogenesis protein syg-1-like isoform X1 [Cuculus canorus].
ACCESSION   XP_053905580
VERSION     XP_053905580.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049605.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..218
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..218
                     /product="synaptogenesis protein syg-1-like isoform X1"
                     /calculated_mol_wt=23614
     Region          60..167
                     /region_name="V-set"
                     /note="Immunoglobulin V-set domain; pfam07686"
                     /db_xref="CDD:462230"
     CDS             1..218
                     /gene="LOC128849195"
                     /coded_by="XM_054049605.1:76..732"
                     /db_xref="GeneID:128849195"
ORIGIN      
        1 mnqhfgklyr stvsslllll lvdvgvsges tskenaavtr ltaqpslltt lepwhllvtq
       61 tpakekakeg etvvlnchfs sprrpsltdl mvrwykedek gqmdlvqnnv ivlpnnsrvf
      121 msgdlsqgda slailnvtin dhgiyfceit lpdgkmvtgd gtklrirral glfgieesig
      181 tiigvvaagi ggvvvliivl tpqlrrcalc mregsrqa
//
LOCUS       XP_053905588             218 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptogenesis protein syg-1-like isoform X2 [Cuculus canorus].
ACCESSION   XP_053905588
VERSION     XP_053905588.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049613.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..218
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..218
                     /product="synaptogenesis protein syg-1-like isoform X2"
                     /calculated_mol_wt=23614
     Region          60..167
                     /region_name="V-set"
                     /note="Immunoglobulin V-set domain; pfam07686"
                     /db_xref="CDD:462230"
     CDS             1..218
                     /gene="LOC128849195"
                     /coded_by="XM_054049613.1:76..732"
                     /db_xref="GeneID:128849195"
ORIGIN      
        1 mnqhfgklyr stvsslllll lvdvgvsges tskenaavtr ltaqpslltt lepwhllvtq
       61 tpakekakeg etvvlnchfs sprrpsltdl mvrwykedek gqmdlvqnnv ivlpnnsrvf
      121 msgdlsqgda slailnvtin dhgiyfceit lpdgkmvtgd gtklrirral glfgieesig
      181 tiigvvaagi ggvvvliivl tpqlrrcalc mregsrqa
//
LOCUS       XP_053905598             301 aa            linear   VRT 09-MAR-2023
DEFINITION  mitochondrial ornithine transporter 1 [Cuculus canorus].
ACCESSION   XP_053905598
VERSION     XP_053905598.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049623.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..301
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..301
                     /product="mitochondrial ornithine transporter 1"
                     /calculated_mol_wt=32578
     Region          9..94
                     /region_name="Mito_carr"
                     /note="Mitochondrial carrier protein; pfam00153"
                     /db_xref="CDD:395101"
     Region          121..198
                     /region_name="Mito_carr"
                     /note="Mitochondrial carrier protein; pfam00153"
                     /db_xref="CDD:395101"
     Region          205..296
                     /region_name="Mito_carr"
                     /note="Mitochondrial carrier protein; pfam00153"
                     /db_xref="CDD:395101"
     CDS             1..301
                     /gene="SLC25A15"
                     /coded_by="XM_054049623.1:436..1341"
                     /db_xref="GeneID:104066135"
ORIGIN      
        1 mrinsaiqaa idltagaagg tacvvtgqpf dtakvkmqtf pdmykgivdc fvktykqvgl
       61 rgfykgttpa lvaniaensv lfmcygfcqq ivrkivgvdr ktklsdlqna aagsfasafa
      121 tlvlcptelv kcrlqamhem qlsgkiiqgh ntvwsvvkgv iqkdgplgfy rglsstllre
      181 vpgyffffgg yelsrtffas grskdelgpi plllsggfgg sclwiavypv dcvksriqvl
      241 smagkqagfm gtfvtvvrte gvlalysglk ptmiraflan galflayeys rklmmkqids
      301 y
//
LOCUS       XP_053905608            1466 aa            linear   VRT 09-MAR-2023
DEFINITION  TRIO and F-actin-binding protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053905608
VERSION     XP_053905608.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049633.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1466
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1466
                     /product="TRIO and F-actin-binding protein isoform X1"
                     /calculated_mol_wt=165362
     Region          359..>703
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     Region          881..982
                     /region_name="PH_M-RIP"
                     /note="Myosin phosphatase-RhoA Interacting Protein
                     Pleckstrin homology (PH) domain; cd13275"
                     /db_xref="CDD:270094"
     Region          <1164..1459
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..1466
                     /gene="TRIOBP"
                     /coded_by="XM_054049633.1:184..4584"
                     /db_xref="GeneID:104065911"
ORIGIN      
        1 msglvddvpc vnfeanifak slcqhcfraa gahqhalqeh vvdvtgcnag sdadssgpwd
       61 alhilapqce vyvsvgpvee teswhesrgy pplspgaese hretgtdpsa caeansalar
      121 ptkttvpncr dlpylvsqeg emtwlwdntl gsgkrdimsy mghkeevwpr vpqadrprwa
      181 qpvpsgswvr teaqgfreei cplkaehrpa sqkpkeswpk hriesgyfsl erqktnppwa
      241 snppratiss slarsnpsvg sghftssqvq ehhrhsgtgg tegrhglerq eytvladlpk
      301 pkrlgqrdav drcssrtlsp grveverifg serrksetle afqaleegrv drldgktpvp
      361 pskgglvrrq sspslpregq rlswtleqrs kdpreslrsp sparhpekss rnrgdplcpa
      421 spscllekgr rsprsaspar qserrtgqpv sppwhldksw rsqgehtrps nsergpttgq
      481 argtgqaper knrgdslypm glgkglgnig lsqagppprs lspgrhaest wrsqkeissp
      541 prslspgrra estwrsqkei sspprsispg rraestwrsq keisspprsi spgrraestr
      601 rsqkeisspp rsispgrhae stwrsqkeis splrslspgr ctestwrsqk evsppprsls
      661 pgrctestwr sqkeisppsl vrgaerqqvk preplhlmgp gkpsecswqs lqeklppshp
      721 gkatgsdckg rgkplrpmsp trpleqdwrg rgdahqgqsw ekdwkrqekp mchanmmhql
      781 eknwkspvrc ldvrlrpdds wkrpespteq leddwkgleh tqdtnnaekp lesnwenkgl
      841 liyhsqlggg tfppqsgssg stqphsnase krkkpdllnf kkgwmsilde pgewkkhwfv
      901 ltdsslryyr dsnaeeaddl dgeidlrsct dvtefavqrn ygfqihtkda vftlsamtsg
      961 irrnwiealr knvrpvsapd vtklsdcdke nsfrncvsqk gslrteeqqr pgsgsegnlk
     1021 gshwkadgqh hafdyvelsp lpqdpgnqgs pqrtrgslri sdrtprheel erdlavrsee
     1081 rrkwfetsds rvsnndglag dssrkaqeqd lpslplsedq rvrlneeiek kwlelerlpl
     1141 kdmhrvplsa llnqskgghg dsnealkkei qslraqlesc raqneslqev vksqgdghvp
     1201 rgyisqeace rslaemelsh qqvmdelqrh hqrelerlrh ekerllaeea aataaaieal
     1261 kkahreemnk elgrtrsfqq cssisdalqk qhqldvdslk relqvlseqy sqkcleigel
     1321 tqkaeerelt lqrcqqegke llrknqelqt rlsdeigklr sfissrssgd rsahnnerss
     1381 celevllrvk enelqylkke vqclreelqm vqkdkrfasg kyqdvyaeln hikvrserei
     1441 eqlkehlrla maalqekesl cnsise
//
LOCUS       XP_053905617            1466 aa            linear   VRT 09-MAR-2023
DEFINITION  TRIO and F-actin-binding protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053905617
VERSION     XP_053905617.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049642.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1466
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1466
                     /product="TRIO and F-actin-binding protein isoform X1"
                     /calculated_mol_wt=165362
     Region          359..>703
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     Region          881..982
                     /region_name="PH_M-RIP"
                     /note="Myosin phosphatase-RhoA Interacting Protein
                     Pleckstrin homology (PH) domain; cd13275"
                     /db_xref="CDD:270094"
     Region          <1164..1459
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..1466
                     /gene="TRIOBP"
                     /coded_by="XM_054049642.1:77..4477"
                     /db_xref="GeneID:104065911"
ORIGIN      
        1 msglvddvpc vnfeanifak slcqhcfraa gahqhalqeh vvdvtgcnag sdadssgpwd
       61 alhilapqce vyvsvgpvee teswhesrgy pplspgaese hretgtdpsa caeansalar
      121 ptkttvpncr dlpylvsqeg emtwlwdntl gsgkrdimsy mghkeevwpr vpqadrprwa
      181 qpvpsgswvr teaqgfreei cplkaehrpa sqkpkeswpk hriesgyfsl erqktnppwa
      241 snppratiss slarsnpsvg sghftssqvq ehhrhsgtgg tegrhglerq eytvladlpk
      301 pkrlgqrdav drcssrtlsp grveverifg serrksetle afqaleegrv drldgktpvp
      361 pskgglvrrq sspslpregq rlswtleqrs kdpreslrsp sparhpekss rnrgdplcpa
      421 spscllekgr rsprsaspar qserrtgqpv sppwhldksw rsqgehtrps nsergpttgq
      481 argtgqaper knrgdslypm glgkglgnig lsqagppprs lspgrhaest wrsqkeissp
      541 prslspgrra estwrsqkei sspprsispg rraestwrsq keisspprsi spgrraestr
      601 rsqkeisspp rsispgrhae stwrsqkeis splrslspgr ctestwrsqk evsppprsls
      661 pgrctestwr sqkeisppsl vrgaerqqvk preplhlmgp gkpsecswqs lqeklppshp
      721 gkatgsdckg rgkplrpmsp trpleqdwrg rgdahqgqsw ekdwkrqekp mchanmmhql
      781 eknwkspvrc ldvrlrpdds wkrpespteq leddwkgleh tqdtnnaekp lesnwenkgl
      841 liyhsqlggg tfppqsgssg stqphsnase krkkpdllnf kkgwmsilde pgewkkhwfv
      901 ltdsslryyr dsnaeeaddl dgeidlrsct dvtefavqrn ygfqihtkda vftlsamtsg
      961 irrnwiealr knvrpvsapd vtklsdcdke nsfrncvsqk gslrteeqqr pgsgsegnlk
     1021 gshwkadgqh hafdyvelsp lpqdpgnqgs pqrtrgslri sdrtprheel erdlavrsee
     1081 rrkwfetsds rvsnndglag dssrkaqeqd lpslplsedq rvrlneeiek kwlelerlpl
     1141 kdmhrvplsa llnqskgghg dsnealkkei qslraqlesc raqneslqev vksqgdghvp
     1201 rgyisqeace rslaemelsh qqvmdelqrh hqrelerlrh ekerllaeea aataaaieal
     1261 kkahreemnk elgrtrsfqq cssisdalqk qhqldvdslk relqvlseqy sqkcleigel
     1321 tqkaeerelt lqrcqqegke llrknqelqt rlsdeigklr sfissrssgd rsahnnerss
     1381 celevllrvk enelqylkke vqclreelqm vqkdkrfasg kyqdvyaeln hikvrserei
     1441 eqlkehlrla maalqekesl cnsise
//
LOCUS       XP_053905620            1435 aa            linear   VRT 09-MAR-2023
DEFINITION  TRIO and F-actin-binding protein isoform X2 [Cuculus canorus].
ACCESSION   XP_053905620
VERSION     XP_053905620.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049645.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1435
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1435
                     /product="TRIO and F-actin-binding protein isoform X2"
                     /calculated_mol_wt=161185
     Region          328..>672
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     Region          850..951
                     /region_name="PH_M-RIP"
                     /note="Myosin phosphatase-RhoA Interacting Protein
                     Pleckstrin homology (PH) domain; cd13275"
                     /db_xref="CDD:270094"
     Region          <1133..1428
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..1435
                     /gene="TRIOBP"
                     /coded_by="XM_054049645.1:184..4491"
                     /db_xref="GeneID:104065911"
ORIGIN      
        1 msglvddvpc vnfeanifak slcqhcfraa gahqhalqeh vvdvtgcnag sdadssgpwd
       61 alhilapqce vyvsvgpvee teswhesrgy pplspgaese hretgtdpsa caeansalar
      121 ccvpvlsphl egvwvlslps wtisssppkt cfavdvvasr iahaspsngl lpvpehrpas
      181 qkpkeswpkh riesgyfsle rqktnppwas nppratisss larsnpsvgs ghftssqvqe
      241 hhrhsgtggt egrhglerqe ytvladlpkp krlgqrdavd rcssrtlspg rveverifgs
      301 errksetlea fqaleegrvd rldgktpvpp skgglvrrqs spslpregqr lswtleqrsk
      361 dpreslrsps parhpekssr nrgdplcpas pscllekgrr sprsasparq serrtgqpvs
      421 ppwhldkswr sqgehtrpsn sergpttgqa rgtgqaperk nrgdslypmg lgkglgnigl
      481 sqagppprsl spgrhaestw rsqkeisspp rslspgrrae stwrsqkeis spprsispgr
      541 raestwrsqk eisspprsis pgrraestrr sqkeissppr sispgrhaes twrsqkeiss
      601 plrslspgrc testwrsqke vsppprslsp grctestwrs qkeisppslv rgaerqqvkp
      661 replhlmgpg kpsecswqsl qeklppshpg katgsdckgr gkplrpmspt rpleqdwrgr
      721 gdahqgqswe kdwkrqekpm chanmmhqle knwkspvrcl dvrlrpddsw krpespteql
      781 eddwkgleht qdtnnaekpl esnwenkgll iyhsqlgggt fppqsgssgs tqphsnasek
      841 rkkpdllnfk kgwmsildep gewkkhwfvl tdsslryyrd snaeeaddld geidlrsctd
      901 vtefavqrny gfqihtkdav ftlsamtsgi rrnwiealrk nvrpvsapdv tklsdcdken
      961 sfrncvsqkg slrteeqqrp gsgsegnlkg shwkadgqhh afdyvelspl pqdpgnqgsp
     1021 qrtrgslris drtprheele rdlavrseer rkwfetsdsr vsnndglagd ssrkaqeqdl
     1081 pslplsedqr vrlneeiekk wlelerlplk dmhrvplsal lnqskgghgd snealkkeiq
     1141 slraqlescr aqneslqevv ksqgdghvpr gyisqeacer slaemelshq qvmdelqrhh
     1201 qrelerlrhe kerllaeeaa ataaaiealk kahreemnke lgrtrsfqqc ssisdalqkq
     1261 hqldvdslkr elqvlseqys qkcleigelt qkaeereltl qrcqqegkel lrknqelqtr
     1321 lsdeigklrs fissrssgdr sahnnerssc elevllrvke nelqylkkev qclreelqmv
     1381 qkdkrfasgk yqdvyaelnh ikvrsereie qlkehlrlam aalqekeslc nsise
//
LOCUS       XP_053905628            1394 aa            linear   VRT 09-MAR-2023
DEFINITION  TRIO and F-actin-binding protein isoform X3 [Cuculus canorus].
ACCESSION   XP_053905628
VERSION     XP_053905628.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049653.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1394
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1394
                     /product="TRIO and F-actin-binding protein isoform X3"
                     /calculated_mol_wt=157216
     Region          359..>703
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     Region          881..982
                     /region_name="PH_M-RIP"
                     /note="Myosin phosphatase-RhoA Interacting Protein
                     Pleckstrin homology (PH) domain; cd13275"
                     /db_xref="CDD:270094"
     Region          <1092..1387
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..1394
                     /gene="TRIOBP"
                     /coded_by="XM_054049653.1:184..4368"
                     /db_xref="GeneID:104065911"
ORIGIN      
        1 msglvddvpc vnfeanifak slcqhcfraa gahqhalqeh vvdvtgcnag sdadssgpwd
       61 alhilapqce vyvsvgpvee teswhesrgy pplspgaese hretgtdpsa caeansalar
      121 ptkttvpncr dlpylvsqeg emtwlwdntl gsgkrdimsy mghkeevwpr vpqadrprwa
      181 qpvpsgswvr teaqgfreei cplkaehrpa sqkpkeswpk hriesgyfsl erqktnppwa
      241 snppratiss slarsnpsvg sghftssqvq ehhrhsgtgg tegrhglerq eytvladlpk
      301 pkrlgqrdav drcssrtlsp grveverifg serrksetle afqaleegrv drldgktpvp
      361 pskgglvrrq sspslpregq rlswtleqrs kdpreslrsp sparhpekss rnrgdplcpa
      421 spscllekgr rsprsaspar qserrtgqpv sppwhldksw rsqgehtrps nsergpttgq
      481 argtgqaper knrgdslypm glgkglgnig lsqagppprs lspgrhaest wrsqkeissp
      541 prslspgrra estwrsqkei sspprsispg rraestwrsq keisspprsi spgrraestr
      601 rsqkeisspp rsispgrhae stwrsqkeis splrslspgr ctestwrsqk evsppprsls
      661 pgrctestwr sqkeisppsl vrgaerqqvk preplhlmgp gkpsecswqs lqeklppshp
      721 gkatgsdckg rgkplrpmsp trpleqdwrg rgdahqgqsw ekdwkrqekp mchanmmhql
      781 eknwkspvrc ldvrlrpdds wkrpespteq leddwkgleh tqdtnnaekp lesnwenkgl
      841 liyhsqlggg tfppqsgssg stqphsnase krkkpdllnf kkgwmsilde pgewkkhwfv
      901 ltdsslryyr dsnaeeaddl dgeidlrsct dvtefavqrn ygfqihtkda vftlsamtsg
      961 irrnwiealr knvrpvsapd vtklsdcdke nsfrncvsqk gslrteeqqr pgsgsegnlk
     1021 gshwkadgqh hafdyvelsp lpqdpedqrv rlneeiekkw lelerlplkd mhrvplsall
     1081 nqskgghgds nealkkeiqs lraqlescra qneslqevvk sqgdghvprg yisqeacers
     1141 laemelshqq vmdelqrhhq relerlrhek erllaeeaaa taaaiealkk ahreemnkel
     1201 grtrsfqqcs sisdalqkqh qldvdslkre lqvlseqysq kcleigeltq kaeereltlq
     1261 rcqqegkell rknqelqtrl sdeigklrsf issrssgdrs ahnnerssce levllrvken
     1321 elqylkkevq clreelqmvq kdkrfasgky qdvyaelnhi kvrsereieq lkehlrlama
     1381 alqekeslcn sise
//
LOCUS       XP_053905639            1373 aa            linear   VRT 09-MAR-2023
DEFINITION  TRIO and F-actin-binding protein isoform X4 [Cuculus canorus].
ACCESSION   XP_053905639
VERSION     XP_053905639.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049664.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1373
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1373
                     /product="TRIO and F-actin-binding protein isoform X4"
                     /calculated_mol_wt=154573
     Region          266..>610
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     Region          788..889
                     /region_name="PH_M-RIP"
                     /note="Myosin phosphatase-RhoA Interacting Protein
                     Pleckstrin homology (PH) domain; cd13275"
                     /db_xref="CDD:270094"
     Region          <1071..1366
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..1373
                     /gene="TRIOBP"
                     /coded_by="XM_054049664.1:184..4305"
                     /db_xref="GeneID:104065911"
ORIGIN      
        1 msglvddvpc vnfeanifak slcqhcfraa gahqhalqeh vvdvtgcnag sdadssgpwd
       61 alhilapqce vyvsvgpvee tessppktcf avdvvasria haspsngllp vpehrpasqk
      121 pkeswpkhri esgyfslerq ktnppwasnp pratisssla rsnpsvgsgh ftssqvqehh
      181 rhsgtggteg rhglerqeyt vladlpkpkr lgqrdavdrc ssrtlspgrv everifgser
      241 rksetleafq aleegrvdrl dgktpvppsk gglvrrqssp slpregqrls wtleqrskdp
      301 reslrspspa rhpekssrnr gdplcpasps cllekgrrsp rsasparqse rrtgqpvspp
      361 whldkswrsq gehtrpsnse rgpttgqarg tgqaperknr gdslypmglg kglgniglsq
      421 agppprslsp grhaestwrs qkeisspprs lspgrraest wrsqkeissp prsispgrra
      481 estwrsqkei sspprsispg rraestrrsq keisspprsi spgrhaestw rsqkeisspl
      541 rslspgrcte stwrsqkevs ppprslspgr ctestwrsqk eisppslvrg aerqqvkpre
      601 plhlmgpgkp secswqslqe klppshpgka tgsdckgrgk plrpmsptrp leqdwrgrgd
      661 ahqgqswekd wkrqekpmch anmmhqlekn wkspvrcldv rlrpddswkr pespteqled
      721 dwkglehtqd tnnaekples nwenkglliy hsqlgggtfp pqsgssgstq phsnasekrk
      781 kpdllnfkkg wmsildepge wkkhwfvltd sslryyrdsn aeeaddldge idlrsctdvt
      841 efavqrnygf qihtkdavft lsamtsgirr nwiealrknv rpvsapdvtk lsdcdkensf
      901 rncvsqkgsl rteeqqrpgs gsegnlkgsh wkadgqhhaf dyvelsplpq dpgnqgspqr
      961 trgslrisdr tprheelerd lavrseerrk wfetsdsrvs nndglagdss rkaqeqdlps
     1021 lplsedqrvr lneeiekkwl elerlplkdm hrvplsalln qskgghgdsn ealkkeiqsl
     1081 raqlescraq neslqevvks qgdghvprgy isqeacersl aemelshqqv mdelqrhhqr
     1141 elerlrheke rllaeeaaat aaaiealkka hreemnkelg rtrsfqqcss isdalqkqhq
     1201 ldvdslkrel qvlseqysqk cleigeltqk aeereltlqr cqqegkellr knqelqtrls
     1261 deigklrsfi ssrssgdrsa hnnersscel evllrvkene lqylkkevqc lreelqmvqk
     1321 dkrfasgkyq dvyaelnhik vrsereieql kehlrlamaa lqekeslcns ise
//
LOCUS       XP_053905645             594 aa            linear   VRT 09-MAR-2023
DEFINITION  TRIO and F-actin-binding protein isoform X5 [Cuculus canorus].
ACCESSION   XP_053905645
VERSION     XP_053905645.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049670.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..594
                     /product="TRIO and F-actin-binding protein isoform X5"
                     /calculated_mol_wt=68346
     Region          9..110
                     /region_name="PH_M-RIP"
                     /note="Myosin phosphatase-RhoA Interacting Protein
                     Pleckstrin homology (PH) domain; cd13275"
                     /db_xref="CDD:270094"
     Region          <292..587
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..594
                     /gene="TRIOBP"
                     /coded_by="XM_054049670.1:141..1925"
                     /db_xref="GeneID:104065911"
ORIGIN      
        1 mtpdllnfkk gwmsildepg ewkkhwfvlt dsslryyrds naeeaddldg eidlrsctdv
       61 tefavqrnyg fqihtkdavf tlsamtsgir rnwiealrkn vrpvsapdvt klsdcdkens
      121 frncvsqkgs lrteeqqrpg sgsegnlkgs hwkadgqhha fdyvelsplp qdpgnqgspq
      181 rtrgslrisd rtprheeler dlavrseerr kwfetsdsrv snndglagds srkaqeqdlp
      241 slplsedqrv rlneeiekkw lelerlplkd mhrvplsall nqskgghgds nealkkeiqs
      301 lraqlescra qneslqevvk sqgdghvprg yisqeacers laemelshqq vmdelqrhhq
      361 relerlrhek erllaeeaaa taaaiealkk ahreemnkel grtrsfqqcs sisdalqkqh
      421 qldvdslkre lqvlseqysq kcleigeltq kaeereltlq rcqqegkell rknqelqtrl
      481 sdeigklrsf issrssgdrs ahnnerssce levllrvken elqylkkevq clreelqmvq
      541 kdkrfasgky qdvyaelnhi kvrsereieq lkehlrlama alqekeslcn sise
//
LOCUS       XP_009555601             920 aa            linear   VRT 09-MAR-2023
DEFINITION  cadherin-related family member 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_009555601
VERSION     XP_009555601.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557306.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555601.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..920
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..920
                     /product="cadherin-related family member 3 isoform X1"
                     /calculated_mol_wt=102231
     Region          82..181
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(85..86,145,147,177,179..180)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          194..275
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          292..390
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(296..297,348,350,386,388..389)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          405..503
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(405..406,462,464,500,502..503)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          512..608
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(519..520,575,577,605,607..608)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          618..727
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     CDS             1..920
                     /gene="CDHR3"
                     /coded_by="XM_009557306.2:2343..5105"
                     /db_xref="GeneID:104056096"
ORIGIN      
        1 mllhaevnie hvliqcaclp gdaichvqrl fplcsvgslv lhlvnmkdkv ikmmksvlll
       61 illrvvsgrr tqllkglpti stveenaaag vslctfnvtl splppegvai lptivnsnpl
      121 ttafdivpkg dleymvvttg dpvldyetmp ksfdlqifve ditgrtdlkt ltvriidkne
      181 hpvfrgnmai qtvtlyvleg apqgriyqvy atdpenaelk ysllpapvpf lvlengdifs
      241 tkvfdyerdq hcyflnitvt dpgglnltkt vniniinind erpyfttkqr iyrikeeqsp
      301 gtpvanitak dpddedspsr lfysiqssdr yfsinpstgv lqvtrridrd afplrlhpnv
      361 svivrvedsp sgghasemei tviiddindn specnpstfr keanenmtag tfllelrnyc
      421 adtdidplnn rfnftglsgf gsnnfalesa vsgrlvmtgs idlenpanlg vavysltvrv
      481 qdiaypdysn iiyiyirikp vndyfpvfnd lsyefnvpei tkvgssigrv sardkdwpps
      541 vitysivagg sikdytnlfw ispskgvvki larldyettq khilvvqasd qeksatasvt
      601 vnvlevndee pfcspnfysf qipvslavgt ningfkieck drdsdprsfr yfinegnvnn
      661 hftfspsags ntsrlilasr fdyengldtn wiyrlrvyit ddnllsarnk athliktgtv
      721 tlnirvipnp ttvvattpsf tvvmkkenlf sesawyvpfi itlssllllg llgylgfllv
      781 kwlrthcpps gkadgtplmn apekkkpkke vimtmtklnt vfdgeardpv tgkiyefntq
      841 sgarrwkkss eslqlapgmq vissatdddg qgtdrvqvls kkepsekrke ptgetkpaap
      901 tsagqlertd gdehrlqkqk
//
LOCUS       XP_053905662             920 aa            linear   VRT 09-MAR-2023
DEFINITION  cadherin-related family member 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053905662
VERSION     XP_053905662.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049687.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..920
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..920
                     /product="cadherin-related family member 3 isoform X1"
                     /calculated_mol_wt=102231
     Region          82..181
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(85..86,145,147,177,179..180)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          194..275
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          292..390
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(296..297,348,350,386,388..389)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          405..503
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(405..406,462,464,500,502..503)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          512..608
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(519..520,575,577,605,607..608)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          618..727
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     CDS             1..920
                     /gene="CDHR3"
                     /coded_by="XM_054049687.1:1432..4194"
                     /db_xref="GeneID:104056096"
ORIGIN      
        1 mllhaevnie hvliqcaclp gdaichvqrl fplcsvgslv lhlvnmkdkv ikmmksvlll
       61 illrvvsgrr tqllkglpti stveenaaag vslctfnvtl splppegvai lptivnsnpl
      121 ttafdivpkg dleymvvttg dpvldyetmp ksfdlqifve ditgrtdlkt ltvriidkne
      181 hpvfrgnmai qtvtlyvleg apqgriyqvy atdpenaelk ysllpapvpf lvlengdifs
      241 tkvfdyerdq hcyflnitvt dpgglnltkt vniniinind erpyfttkqr iyrikeeqsp
      301 gtpvanitak dpddedspsr lfysiqssdr yfsinpstgv lqvtrridrd afplrlhpnv
      361 svivrvedsp sgghasemei tviiddindn specnpstfr keanenmtag tfllelrnyc
      421 adtdidplnn rfnftglsgf gsnnfalesa vsgrlvmtgs idlenpanlg vavysltvrv
      481 qdiaypdysn iiyiyirikp vndyfpvfnd lsyefnvpei tkvgssigrv sardkdwpps
      541 vitysivagg sikdytnlfw ispskgvvki larldyettq khilvvqasd qeksatasvt
      601 vnvlevndee pfcspnfysf qipvslavgt ningfkieck drdsdprsfr yfinegnvnn
      661 hftfspsags ntsrlilasr fdyengldtn wiyrlrvyit ddnllsarnk athliktgtv
      721 tlnirvipnp ttvvattpsf tvvmkkenlf sesawyvpfi itlssllllg llgylgfllv
      781 kwlrthcpps gkadgtplmn apekkkpkke vimtmtklnt vfdgeardpv tgkiyefntq
      841 sgarrwkkss eslqlapgmq vissatdddg qgtdrvqvls kkepsekrke ptgetkpaap
      901 tsagqlertd gdehrlqkqk
//
LOCUS       XP_053905672             881 aa            linear   VRT 09-MAR-2023
DEFINITION  cadherin-related family member 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053905672
VERSION     XP_053905672.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049697.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..881
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..881
                     /product="cadherin-related family member 3 isoform X2"
                     /calculated_mol_wt=98167
     Region          74..143
                     /region_name="CA_like"
                     /note="Cadherin repeat-like domain; cl46864"
                     /db_xref="CDD:481204"
     Region          155..236
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          253..351
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(257..258,309,311,347,349..350)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          366..464
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(366..367,423,425,461,463..464)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          473..569
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(480..481,536,538,566,568..569)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          579..688
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     CDS             1..881
                     /gene="CDHR3"
                     /coded_by="XM_054049697.1:7779..10424"
                     /db_xref="GeneID:104056096"
ORIGIN      
        1 mllhaevnie hvliqcaclp gdaichvqrl fplcsvgslv lhlvnmkdkv ikmmksvlll
       61 illrvvsgva ilptivnsnp lttafdivpk gdleymvvtt gdpvldyetm pksfdlqifv
      121 editgrtdlk tltvriidkn ehpvfrgnma iqtvtlyvle gapqgriyqv yatdpenael
      181 kysllpapvp flvlengdif stkvfdyerd qhcyflnitv tdpgglnltk tvniniinin
      241 derpyfttkq riyrikeeqs pgtpvanita kdpddedsps rlfysiqssd ryfsinpstg
      301 vlqvtrridr dafplrlhpn vsvivrveds psgghaseme itviiddind nspecnpstf
      361 rkeanenmta gtfllelrny cadtdidpln nrfnftglsg fgsnnfales avsgrlvmtg
      421 sidlenpanl gvavysltvr vqdiaypdys niiyiyirik pvndyfpvfn dlsyefnvpe
      481 itkvgssigr vsardkdwpp svitysivag gsikdytnlf wispskgvvk ilarldyett
      541 qkhilvvqas dqeksatasv tvnvlevnde epfcspnfys fqipvslavg tningfkiec
      601 kdrdsdprsf ryfinegnvn nhftfspsag sntsrlilas rfdyengldt nwiyrlrvyi
      661 tddnllsarn kathliktgt vtlnirvipn pttvvattps ftvvmkkenl fsesawyvpf
      721 iitlssllll gllgylgfll vkwlrthcpp sgkadgtplm napekkkpkk evimtmtkln
      781 tvfdgeardp vtgkiyefnt qsgarrwkks seslqlapgm qvissatddd gqgtdrvqvl
      841 skkepsekrk eptgetkpaa ptsagqlert dgdehrlqkq k
//
LOCUS       XP_053905680             859 aa            linear   VRT 09-MAR-2023
DEFINITION  cadherin-related family member 3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053905680
VERSION     XP_053905680.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049705.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..859
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..859
                     /product="cadherin-related family member 3 isoform X3"
                     /calculated_mol_wt=95406
     Region          21..120
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(24..25,84,86,116,118..119)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          133..214
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          231..329
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(235..236,287,289,325,327..328)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          344..442
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(344..345,401,403,439,441..442)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          451..547
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(458..459,514,516,544,546..547)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          557..666
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     CDS             1..859
                     /gene="CDHR3"
                     /coded_by="XM_054049705.1:7679..10258"
                     /db_xref="GeneID:104056096"
ORIGIN      
        1 mvgmakgrrt qllkglptis tveenaaagv slctfnvtls plppegvail ptivnsnplt
       61 tafdivpkgd leymvvttgd pvldyetmpk sfdlqifved itgrtdlktl tvriidkneh
      121 pvfrgnmaiq tvtlyvlega pqgriyqvya tdpenaelky sllpapvpfl vlengdifst
      181 kvfdyerdqh cyflnitvtd pgglnltktv niniininde rpyfttkqri yrikeeqspg
      241 tpvanitakd pddedspsrl fysiqssdry fsinpstgvl qvtrridrda fplrlhpnvs
      301 vivrvedsps gghasemeit viiddindns pecnpstfrk eanenmtagt fllelrnyca
      361 dtdidplnnr fnftglsgfg snnfalesav sgrlvmtgsi dlenpanlgv avysltvrvq
      421 diaypdysni iyiyirikpv ndyfpvfndl syefnvpeit kvgssigrvs ardkdwppsv
      481 itysivaggs ikdytnlfwi spskgvvkil arldyettqk hilvvqasdq eksatasvtv
      541 nvlevndeep fcspnfysfq ipvslavgtn ingfkieckd rdsdprsfry finegnvnnh
      601 ftfspsagsn tsrlilasrf dyengldtnw iyrlrvyitd dnllsarnka thliktgtvt
      661 lnirvipnpt tvvattpsft vvmkkenlfs esawyvpfii tlssllllgl lgylgfllvk
      721 wlrthcppsg kadgtplmna pekkkpkkev imtmtklntv fdgeardpvt gkiyefntqs
      781 garrwkksse slqlapgmqv issatdddgq gtdrvqvlsk kepsekrkep tgetkpaapt
      841 sagqlertdg dehrlqkqk
//
LOCUS       XP_053905686             859 aa            linear   VRT 09-MAR-2023
DEFINITION  cadherin-related family member 3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053905686
VERSION     XP_053905686.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049711.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..859
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..859
                     /product="cadherin-related family member 3 isoform X3"
                     /calculated_mol_wt=95406
     Region          21..120
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(24..25,84,86,116,118..119)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          133..214
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          231..329
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(235..236,287,289,325,327..328)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          344..442
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(344..345,401,403,439,441..442)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          451..547
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(458..459,514,516,544,546..547)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          557..666
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     CDS             1..859
                     /gene="CDHR3"
                     /coded_by="XM_054049711.1:4900..7479"
                     /db_xref="GeneID:104056096"
ORIGIN      
        1 mvgmakgrrt qllkglptis tveenaaagv slctfnvtls plppegvail ptivnsnplt
       61 tafdivpkgd leymvvttgd pvldyetmpk sfdlqifved itgrtdlktl tvriidkneh
      121 pvfrgnmaiq tvtlyvlega pqgriyqvya tdpenaelky sllpapvpfl vlengdifst
      181 kvfdyerdqh cyflnitvtd pgglnltktv niniininde rpyfttkqri yrikeeqspg
      241 tpvanitakd pddedspsrl fysiqssdry fsinpstgvl qvtrridrda fplrlhpnvs
      301 vivrvedsps gghasemeit viiddindns pecnpstfrk eanenmtagt fllelrnyca
      361 dtdidplnnr fnftglsgfg snnfalesav sgrlvmtgsi dlenpanlgv avysltvrvq
      421 diaypdysni iyiyirikpv ndyfpvfndl syefnvpeit kvgssigrvs ardkdwppsv
      481 itysivaggs ikdytnlfwi spskgvvkil arldyettqk hilvvqasdq eksatasvtv
      541 nvlevndeep fcspnfysfq ipvslavgtn ingfkieckd rdsdprsfry finegnvnnh
      601 ftfspsagsn tsrlilasrf dyengldtnw iyrlrvyitd dnllsarnka thliktgtvt
      661 lnirvipnpt tvvattpsft vvmkkenlfs esawyvpfii tlssllllgl lgylgfllvk
      721 wlrthcppsg kadgtplmna pekkkpkkev imtmtklntv fdgeardpvt gkiyefntqs
      781 garrwkksse slqlapgmqv issatdddgq gtdrvqvlsk kepsekrkep tgetkpaapt
      841 sagqlertdg dehrlqkqk
//
LOCUS       XP_053905692             859 aa            linear   VRT 09-MAR-2023
DEFINITION  cadherin-related family member 3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053905692
VERSION     XP_053905692.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049717.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..859
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..859
                     /product="cadherin-related family member 3 isoform X3"
                     /calculated_mol_wt=95406
     Region          21..120
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(24..25,84,86,116,118..119)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          133..214
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          231..329
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(235..236,287,289,325,327..328)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          344..442
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(344..345,401,403,439,441..442)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          451..547
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(458..459,514,516,544,546..547)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          557..666
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     CDS             1..859
                     /gene="CDHR3"
                     /coded_by="XM_054049717.1:707..3286"
                     /db_xref="GeneID:104056096"
ORIGIN      
        1 mvgmakgrrt qllkglptis tveenaaagv slctfnvtls plppegvail ptivnsnplt
       61 tafdivpkgd leymvvttgd pvldyetmpk sfdlqifved itgrtdlktl tvriidkneh
      121 pvfrgnmaiq tvtlyvlega pqgriyqvya tdpenaelky sllpapvpfl vlengdifst
      181 kvfdyerdqh cyflnitvtd pgglnltktv niniininde rpyfttkqri yrikeeqspg
      241 tpvanitakd pddedspsrl fysiqssdry fsinpstgvl qvtrridrda fplrlhpnvs
      301 vivrvedsps gghasemeit viiddindns pecnpstfrk eanenmtagt fllelrnyca
      361 dtdidplnnr fnftglsgfg snnfalesav sgrlvmtgsi dlenpanlgv avysltvrvq
      421 diaypdysni iyiyirikpv ndyfpvfndl syefnvpeit kvgssigrvs ardkdwppsv
      481 itysivaggs ikdytnlfwi spskgvvkil arldyettqk hilvvqasdq eksatasvtv
      541 nvlevndeep fcspnfysfq ipvslavgtn ingfkieckd rdsdprsfry finegnvnnh
      601 ftfspsagsn tsrlilasrf dyengldtnw iyrlrvyitd dnllsarnka thliktgtvt
      661 lnirvipnpt tvvattpsft vvmkkenlfs esawyvpfii tlssllllgl lgylgfllvk
      721 wlrthcppsg kadgtplmna pekkkpkkev imtmtklntv fdgeardpvt gkiyefntqs
      781 garrwkksse slqlapgmqv issatdddgq gtdrvqvlsk kepsekrkep tgetkpaapt
      841 sagqlertdg dehrlqkqk
//
LOCUS       XP_053905699             859 aa            linear   VRT 09-MAR-2023
DEFINITION  cadherin-related family member 3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053905699
VERSION     XP_053905699.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049724.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..859
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..859
                     /product="cadherin-related family member 3 isoform X3"
                     /calculated_mol_wt=95406
     Region          21..120
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(24..25,84,86,116,118..119)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          133..214
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          231..329
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(235..236,287,289,325,327..328)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          344..442
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(344..345,401,403,439,441..442)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          451..547
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(458..459,514,516,544,546..547)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          557..666
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     CDS             1..859
                     /gene="CDHR3"
                     /coded_by="XM_054049724.1:128..2707"
                     /db_xref="GeneID:104056096"
ORIGIN      
        1 mvgmakgrrt qllkglptis tveenaaagv slctfnvtls plppegvail ptivnsnplt
       61 tafdivpkgd leymvvttgd pvldyetmpk sfdlqifved itgrtdlktl tvriidkneh
      121 pvfrgnmaiq tvtlyvlega pqgriyqvya tdpenaelky sllpapvpfl vlengdifst
      181 kvfdyerdqh cyflnitvtd pgglnltktv niniininde rpyfttkqri yrikeeqspg
      241 tpvanitakd pddedspsrl fysiqssdry fsinpstgvl qvtrridrda fplrlhpnvs
      301 vivrvedsps gghasemeit viiddindns pecnpstfrk eanenmtagt fllelrnyca
      361 dtdidplnnr fnftglsgfg snnfalesav sgrlvmtgsi dlenpanlgv avysltvrvq
      421 diaypdysni iyiyirikpv ndyfpvfndl syefnvpeit kvgssigrvs ardkdwppsv
      481 itysivaggs ikdytnlfwi spskgvvkil arldyettqk hilvvqasdq eksatasvtv
      541 nvlevndeep fcspnfysfq ipvslavgtn ingfkieckd rdsdprsfry finegnvnnh
      601 ftfspsagsn tsrlilasrf dyengldtnw iyrlrvyitd dnllsarnka thliktgtvt
      661 lnirvipnpt tvvattpsft vvmkkenlfs esawyvpfii tlssllllgl lgylgfllvk
      721 wlrthcppsg kadgtplmna pekkkpkkev imtmtklntv fdgeardpvt gkiyefntqs
      781 garrwkksse slqlapgmqv issatdddgq gtdrvqvlsk kepsekrkep tgetkpaapt
      841 sagqlertdg dehrlqkqk
//
LOCUS       XP_053905705             832 aa            linear   VRT 09-MAR-2023
DEFINITION  cadherin-related family member 3 isoform X4 [Cuculus canorus].
ACCESSION   XP_053905705
VERSION     XP_053905705.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049730.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..832
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..832
                     /product="cadherin-related family member 3 isoform X4"
                     /calculated_mol_wt=92934
     Region          25..94
                     /region_name="CA_like"
                     /note="Cadherin repeat-like domain; cl46864"
                     /db_xref="CDD:481204"
     Region          106..187
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          204..302
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(208..209,260,262,298,300..301)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          317..415
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(317..318,374,376,412,414..415)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          424..520
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(431..432,487,489,517,519..520)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          530..639
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     CDS             1..832
                     /gene="CDHR3"
                     /coded_by="XM_054049730.1:27..2525"
                     /db_xref="GeneID:104056096"
ORIGIN      
        1 mqyvmssacf rcvqwdllcv ailptivnsn plttafdivp kgdleymvvt tgdpvldyet
       61 mpksfdlqif veditgrtdl ktltvriidk nehpvfrgnm aiqtvtlyvl egapqgriyq
      121 vyatdpenae lkysllpapv pflvlengdi fstkvfdyer dqhcyflnit vtdpgglnlt
      181 ktvniniini nderpyfttk qriyrikeeq spgtpvanit akdpddedsp srlfysiqss
      241 dryfsinpst gvlqvtrrid rdafplrlhp nvsvivrved spsgghasem eitviiddin
      301 dnspecnpst frkeanenmt agtfllelrn ycadtdidpl nnrfnftgls gfgsnnfale
      361 savsgrlvmt gsidlenpan lgvavysltv rvqdiaypdy sniiyiyiri kpvndyfpvf
      421 ndlsyefnvp eitkvgssig rvsardkdwp psvitysiva ggsikdytnl fwispskgvv
      481 kilarldyet tqkhilvvqa sdqeksatas vtvnvlevnd eepfcspnfy sfqipvslav
      541 gtningfkie ckdrdsdprs fryfinegnv nnhftfspsa gsntsrlila srfdyengld
      601 tnwiyrlrvy itddnllsar nkathliktg tvtlnirvip npttvvattp sftvvmkken
      661 lfsesawyvp fiitlsslll lgllgylgfl lvkwlrthcp psgkadgtpl mnapekkkpk
      721 kevimtmtkl ntvfdgeard pvtgkiyefn tqsgarrwkk sseslqlapg mqvissatdd
      781 dgqgtdrvqv lskkepsekr keptgetkpa aptsagqler tdgdehrlqk qk
//
LOCUS       XP_053905713             820 aa            linear   VRT 09-MAR-2023
DEFINITION  cadherin-related family member 3 isoform X5 [Cuculus canorus].
ACCESSION   XP_053905713
VERSION     XP_053905713.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049738.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..820
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..820
                     /product="cadherin-related family member 3 isoform X5"
                     /calculated_mol_wt=91343
     Region          13..82
                     /region_name="CA_like"
                     /note="Cadherin repeat-like domain; cl46864"
                     /db_xref="CDD:481204"
     Region          94..175
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          192..290
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(196..197,248,250,286,288..289)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          305..403
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(305..306,362,364,400,402..403)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          412..508
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(419..420,475,477,505,507..508)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          518..627
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     CDS             1..820
                     /gene="CDHR3"
                     /coded_by="XM_054049738.1:7679..10141"
                     /db_xref="GeneID:104056096"
ORIGIN      
        1 mvgmakgvai lptivnsnpl ttafdivpkg dleymvvttg dpvldyetmp ksfdlqifve
       61 ditgrtdlkt ltvriidkne hpvfrgnmai qtvtlyvleg apqgriyqvy atdpenaelk
      121 ysllpapvpf lvlengdifs tkvfdyerdq hcyflnitvt dpgglnltkt vniniinind
      181 erpyfttkqr iyrikeeqsp gtpvanitak dpddedspsr lfysiqssdr yfsinpstgv
      241 lqvtrridrd afplrlhpnv svivrvedsp sgghasemei tviiddindn specnpstfr
      301 keanenmtag tfllelrnyc adtdidplnn rfnftglsgf gsnnfalesa vsgrlvmtgs
      361 idlenpanlg vavysltvrv qdiaypdysn iiyiyirikp vndyfpvfnd lsyefnvpei
      421 tkvgssigrv sardkdwpps vitysivagg sikdytnlfw ispskgvvki larldyettq
      481 khilvvqasd qeksatasvt vnvlevndee pfcspnfysf qipvslavgt ningfkieck
      541 drdsdprsfr yfinegnvnn hftfspsags ntsrlilasr fdyengldtn wiyrlrvyit
      601 ddnllsarnk athliktgtv tlnirvipnp ttvvattpsf tvvmkkenlf sesawyvpfi
      661 itlssllllg llgylgfllv kwlrthcpps gkadgtplmn apekkkpkke vimtmtklnt
      721 vfdgeardpv tgkiyefntq sgarrwkkss eslqlapgmq vissatdddg qgtdrvqvls
      781 kkepsekrke ptgetkpaap tsagqlertd gdehrlqkqk
//
LOCUS       XP_053905722             803 aa            linear   VRT 09-MAR-2023
DEFINITION  cadherin-related family member 3 isoform X6 [Cuculus canorus].
ACCESSION   XP_053905722
VERSION     XP_053905722.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049747.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..803
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..803
                     /product="cadherin-related family member 3 isoform X6"
                     /calculated_mol_wt=89869
     Region          77..158
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          175..273
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(179..180,231,233,269,271..272)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          288..386
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(288..289,345,347,383,385..386)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          395..491
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(402..403,458,460,488,490..491)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          501..610
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     CDS             1..803
                     /gene="CDHR3"
                     /coded_by="XM_054049747.1:4865..7276"
                     /db_xref="GeneID:104056096"
ORIGIN      
        1 mskradlgtq qkwlewqkvv ttgdpvldye tmpksfdlqi fveditgrtd lktltvriid
       61 knehpvfrgn maiqtvtlyv legapqgriy qvyatdpena elkysllpap vpflvlengd
      121 ifstkvfdye rdqhcyflni tvtdpgglnl tktvniniin inderpyftt kqriyrikee
      181 qspgtpvani takdpddeds psrlfysiqs sdryfsinps tgvlqvtrri drdafplrlh
      241 pnvsvivrve dspsgghase meitviiddi ndnspecnps tfrkeanenm tagtfllelr
      301 nycadtdidp lnnrfnftgl sgfgsnnfal esavsgrlvm tgsidlenpa nlgvavyslt
      361 vrvqdiaypd ysniiyiyir ikpvndyfpv fndlsyefnv peitkvgssi grvsardkdw
      421 ppsvitysiv aggsikdytn lfwispskgv vkilarldye ttqkhilvvq asdqeksata
      481 svtvnvlevn deepfcspnf ysfqipvsla vgtningfki eckdrdsdpr sfryfinegn
      541 vnnhftfsps agsntsrlil asrfdyengl dtnwiyrlrv yitddnllsa rnkathlikt
      601 gtvtlnirvi pnpttvvatt psftvvmkke nlfsesawyv pfiitlssll llgllgylgf
      661 llvkwlrthc ppsgkadgtp lmnapekkkp kkevimtmtk lntvfdgear dpvtgkiyef
      721 ntqsgarrwk ksseslqlap gmqvissatd ddgqgtdrvq vlskkepsek rkeptgetkp
      781 aaptsagqle rtdgdehrlq kqk
//
LOCUS       XP_053905731             803 aa            linear   VRT 09-MAR-2023
DEFINITION  cadherin-related family member 3 isoform X6 [Cuculus canorus].
ACCESSION   XP_053905731
VERSION     XP_053905731.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049756.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..803
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..803
                     /product="cadherin-related family member 3 isoform X6"
                     /calculated_mol_wt=89869
     Region          77..158
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          175..273
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(179..180,231,233,269,271..272)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          288..386
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(288..289,345,347,383,385..386)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          395..491
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(402..403,458,460,488,490..491)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          501..610
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     CDS             1..803
                     /gene="CDHR3"
                     /coded_by="XM_054049756.1:172..2583"
                     /db_xref="GeneID:104056096"
ORIGIN      
        1 mskradlgtq qkwlewqkvv ttgdpvldye tmpksfdlqi fveditgrtd lktltvriid
       61 knehpvfrgn maiqtvtlyv legapqgriy qvyatdpena elkysllpap vpflvlengd
      121 ifstkvfdye rdqhcyflni tvtdpgglnl tktvniniin inderpyftt kqriyrikee
      181 qspgtpvani takdpddeds psrlfysiqs sdryfsinps tgvlqvtrri drdafplrlh
      241 pnvsvivrve dspsgghase meitviiddi ndnspecnps tfrkeanenm tagtfllelr
      301 nycadtdidp lnnrfnftgl sgfgsnnfal esavsgrlvm tgsidlenpa nlgvavyslt
      361 vrvqdiaypd ysniiyiyir ikpvndyfpv fndlsyefnv peitkvgssi grvsardkdw
      421 ppsvitysiv aggsikdytn lfwispskgv vkilarldye ttqkhilvvq asdqeksata
      481 svtvnvlevn deepfcspnf ysfqipvsla vgtningfki eckdrdsdpr sfryfinegn
      541 vnnhftfsps agsntsrlil asrfdyengl dtnwiyrlrv yitddnllsa rnkathlikt
      601 gtvtlnirvi pnpttvvatt psftvvmkke nlfsesawyv pfiitlssll llgllgylgf
      661 llvkwlrthc ppsgkadgtp lmnapekkkp kkevimtmtk lntvfdgear dpvtgkiyef
      721 ntqsgarrwk ksseslqlap gmqvissatd ddgqgtdrvq vlskkepsek rkeptgetkp
      781 aaptsagqle rtdgdehrlq kqk
//
LOCUS       XP_053905741             803 aa            linear   VRT 09-MAR-2023
DEFINITION  cadherin-related family member 3 isoform X6 [Cuculus canorus].
ACCESSION   XP_053905741
VERSION     XP_053905741.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049766.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..803
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..803
                     /product="cadherin-related family member 3 isoform X6"
                     /calculated_mol_wt=89869
     Region          77..158
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          175..273
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(179..180,231,233,269,271..272)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          288..386
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(288..289,345,347,383,385..386)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          395..491
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(402..403,458,460,488,490..491)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          501..610
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     CDS             1..803
                     /gene="CDHR3"
                     /coded_by="XM_054049766.1:672..3083"
                     /db_xref="GeneID:104056096"
ORIGIN      
        1 mskradlgtq qkwlewqkvv ttgdpvldye tmpksfdlqi fveditgrtd lktltvriid
       61 knehpvfrgn maiqtvtlyv legapqgriy qvyatdpena elkysllpap vpflvlengd
      121 ifstkvfdye rdqhcyflni tvtdpgglnl tktvniniin inderpyftt kqriyrikee
      181 qspgtpvani takdpddeds psrlfysiqs sdryfsinps tgvlqvtrri drdafplrlh
      241 pnvsvivrve dspsgghase meitviiddi ndnspecnps tfrkeanenm tagtfllelr
      301 nycadtdidp lnnrfnftgl sgfgsnnfal esavsgrlvm tgsidlenpa nlgvavyslt
      361 vrvqdiaypd ysniiyiyir ikpvndyfpv fndlsyefnv peitkvgssi grvsardkdw
      421 ppsvitysiv aggsikdytn lfwispskgv vkilarldye ttqkhilvvq asdqeksata
      481 svtvnvlevn deepfcspnf ysfqipvsla vgtningfki eckdrdsdpr sfryfinegn
      541 vnnhftfsps agsntsrlil asrfdyengl dtnwiyrlrv yitddnllsa rnkathlikt
      601 gtvtlnirvi pnpttvvatt psftvvmkke nlfsesawyv pfiitlssll llgllgylgf
      661 llvkwlrthc ppsgkadgtp lmnapekkkp kkevimtmtk lntvfdgear dpvtgkiyef
      721 ntqsgarrwk ksseslqlap gmqvissatd ddgqgtdrvq vlskkepsek rkeptgetkp
      781 aaptsagqle rtdgdehrlq kqk
//
LOCUS       XP_053905750             803 aa            linear   VRT 09-MAR-2023
DEFINITION  cadherin-related family member 3 isoform X6 [Cuculus canorus].
ACCESSION   XP_053905750
VERSION     XP_053905750.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049775.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..803
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..803
                     /product="cadherin-related family member 3 isoform X6"
                     /calculated_mol_wt=89869
     Region          77..158
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          175..273
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(179..180,231,233,269,271..272)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          288..386
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(288..289,345,347,383,385..386)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          395..491
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(402..403,458,460,488,490..491)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          501..610
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     CDS             1..803
                     /gene="CDHR3"
                     /coded_by="XM_054049775.1:3930..6341"
                     /db_xref="GeneID:104056096"
ORIGIN      
        1 mskradlgtq qkwlewqkvv ttgdpvldye tmpksfdlqi fveditgrtd lktltvriid
       61 knehpvfrgn maiqtvtlyv legapqgriy qvyatdpena elkysllpap vpflvlengd
      121 ifstkvfdye rdqhcyflni tvtdpgglnl tktvniniin inderpyftt kqriyrikee
      181 qspgtpvani takdpddeds psrlfysiqs sdryfsinps tgvlqvtrri drdafplrlh
      241 pnvsvivrve dspsgghase meitviiddi ndnspecnps tfrkeanenm tagtfllelr
      301 nycadtdidp lnnrfnftgl sgfgsnnfal esavsgrlvm tgsidlenpa nlgvavyslt
      361 vrvqdiaypd ysniiyiyir ikpvndyfpv fndlsyefnv peitkvgssi grvsardkdw
      421 ppsvitysiv aggsikdytn lfwispskgv vkilarldye ttqkhilvvq asdqeksata
      481 svtvnvlevn deepfcspnf ysfqipvsla vgtningfki eckdrdsdpr sfryfinegn
      541 vnnhftfsps agsntsrlil asrfdyengl dtnwiyrlrv yitddnllsa rnkathlikt
      601 gtvtlnirvi pnpttvvatt psftvvmkke nlfsesawyv pfiitlssll llgllgylgf
      661 llvkwlrthc ppsgkadgtp lmnapekkkp kkevimtmtk lntvfdgear dpvtgkiyef
      721 ntqsgarrwk ksseslqlap gmqvissatd ddgqgtdrvq vlskkepsek rkeptgetkp
      781 aaptsagqle rtdgdehrlq kqk
//
LOCUS       XP_053905757             800 aa            linear   VRT 09-MAR-2023
DEFINITION  cadherin-related family member 3 isoform X7 [Cuculus canorus].
ACCESSION   XP_053905757
VERSION     XP_053905757.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049782.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..800
                     /product="cadherin-related family member 3 isoform X7"
                     /calculated_mol_wt=88964
     Region          82..181
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(85..86,145,147,177,179..180)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          194..275
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          292..390
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(296..297,348,350,386,388..389)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          405..503
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(405..406,462,464,500,502..503)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          512..608
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(519..520,575,577,605,607..608)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          618..727
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     CDS             1..800
                     /gene="CDHR3"
                     /coded_by="XM_054049782.1:7779..10181"
                     /db_xref="GeneID:104056096"
ORIGIN      
        1 mllhaevnie hvliqcaclp gdaichvqrl fplcsvgslv lhlvnmkdkv ikmmksvlll
       61 illrvvsgrr tqllkglpti stveenaaag vslctfnvtl splppegvai lptivnsnpl
      121 ttafdivpkg dleymvvttg dpvldyetmp ksfdlqifve ditgrtdlkt ltvriidkne
      181 hpvfrgnmai qtvtlyvleg apqgriyqvy atdpenaelk ysllpapvpf lvlengdifs
      241 tkvfdyerdq hcyflnitvt dpgglnltkt vniniinind erpyfttkqr iyrikeeqsp
      301 gtpvanitak dpddedspsr lfysiqssdr yfsinpstgv lqvtrridrd afplrlhpnv
      361 svivrvedsp sgghasemei tviiddindn specnpstfr keanenmtag tfllelrnyc
      421 adtdidplnn rfnftglsgf gsnnfalesa vsgrlvmtgs idlenpanlg vavysltvrv
      481 qdiaypdysn iiyiyirikp vndyfpvfnd lsyefnvpei tkvgssigrv sardkdwpps
      541 vitysivagg sikdytnlfw ispskgvvki larldyettq khilvvqasd qeksatasvt
      601 vnvlevndee pfcspnfysf qipvslavgt ningfkieck drdsdprsfr yfinegnvnn
      661 hftfspsags ntsrlilasr fdyengldtn wiyrlrvyit ddnllsarnk athliktgtv
      721 tlnirvipnp ttvvattpsf tvvmkkenlf sesawyvpfi itlssllllg llgylgfllv
      781 kwlrthcpps gkadgtplmk
//
LOCUS       XP_053905767             786 aa            linear   VRT 09-MAR-2023
DEFINITION  cadherin-related family member 3 isoform X8 [Cuculus canorus].
ACCESSION   XP_053905767
VERSION     XP_053905767.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049792.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..786
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..786
                     /product="cadherin-related family member 3 isoform X8"
                     /calculated_mol_wt=87785
     Region          60..141
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          158..256
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(162..163,214,216,252,254..255)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          271..369
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(271..272,328,330,366,368..369)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          378..474
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(385..386,441,443,471,473..474)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          484..593
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     CDS             1..786
                     /gene="CDHR3"
                     /coded_by="XM_054049792.1:334..2694"
                     /db_xref="GeneID:104056096"
ORIGIN      
        1 mvvttgdpvl dyetmpksfd lqifveditg rtdlktltvr iidknehpvf rgnmaiqtvt
       61 lyvlegapqg riyqvyatdp enaelkysll papvpflvle ngdifstkvf dyerdqhcyf
      121 lnitvtdpgg lnltktvnin iininderpy fttkqriyri keeqspgtpv anitakdpdd
      181 edspsrlfys iqssdryfsi npstgvlqvt rridrdafpl rlhpnvsviv rvedspsggh
      241 asemeitvii ddindnspec npstfrkean enmtagtfll elrnycadtd idplnnrfnf
      301 tglsgfgsnn falesavsgr lvmtgsidle npanlgvavy sltvrvqdia ypdysniiyi
      361 yirikpvndy fpvfndlsye fnvpeitkvg ssigrvsard kdwppsvity sivaggsikd
      421 ytnlfwisps kgvvkilarl dyettqkhil vvqasdqeks atasvtvnvl evndeepfcs
      481 pnfysfqipv slavgtning fkieckdrds dprsfryfin egnvnnhftf spsagsntsr
      541 lilasrfdye ngldtnwiyr lrvyitddnl lsarnkathl iktgtvtlni rvipnpttvv
      601 attpsftvvm kkenlfsesa wyvpfiitls sllllgllgy lgfllvkwlr thcppsgkad
      661 gtplmnapek kkpkkevimt mtklntvfdg eardpvtgki yefntqsgar rwkksseslq
      721 lapgmqviss atdddgqgtd rvqvlskkep sekrkeptge tkpaaptsag qlertdgdeh
      781 rlqkqk
//
LOCUS       XP_053905772             749 aa            linear   VRT 09-MAR-2023
DEFINITION  cadherin-related family member 3 isoform X9 [Cuculus canorus].
ACCESSION   XP_053905772
VERSION     XP_053905772.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049797.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..749
                     /product="cadherin-related family member 3 isoform X9"
                     /calculated_mol_wt=83327
     Region          82..181
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(85..86,145,147,177,179..180)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          194..275
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          292..390
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(296..297,348,350,386,388..389)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          405..503
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(405..406,462,464,500,502..503)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          512..608
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(519..520,575,577,605,607..608)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          618..727
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     CDS             1..749
                     /gene="CDHR3"
                     /coded_by="XM_054049797.1:7779..10028"
                     /db_xref="GeneID:104056096"
ORIGIN      
        1 mllhaevnie hvliqcaclp gdaichvqrl fplcsvgslv lhlvnmkdkv ikmmksvlll
       61 illrvvsgrr tqllkglpti stveenaaag vslctfnvtl splppegvai lptivnsnpl
      121 ttafdivpkg dleymvvttg dpvldyetmp ksfdlqifve ditgrtdlkt ltvriidkne
      181 hpvfrgnmai qtvtlyvleg apqgriyqvy atdpenaelk ysllpapvpf lvlengdifs
      241 tkvfdyerdq hcyflnitvt dpgglnltkt vniniinind erpyfttkqr iyrikeeqsp
      301 gtpvanitak dpddedspsr lfysiqssdr yfsinpstgv lqvtrridrd afplrlhpnv
      361 svivrvedsp sgghasemei tviiddindn specnpstfr keanenmtag tfllelrnyc
      421 adtdidplnn rfnftglsgf gsnnfalesa vsgrlvmtgs idlenpanlg vavysltvrv
      481 qdiaypdysn iiyiyirikp vndyfpvfnd lsyefnvpei tkvgssigrv sardkdwpps
      541 vitysivagg sikdytnlfw ispskgvvki larldyettq khilvvqasd qeksatasvt
      601 vnvlevndee pfcspnfysf qipvslavgt ningfkieck drdsdprsfr yfinegnvnn
      661 hftfspsags ntsrlilasr fdyengldtn wiyrlrvyit ddnllsarnk athliktgtv
      721 tlnirvipnp ttvvattlhc cdekgkplf
//
LOCUS       XP_053905785             869 aa            linear   VRT 09-MAR-2023
DEFINITION  ataxin-7-like protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053905785
VERSION     XP_053905785.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049810.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..869
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..869
                     /product="ataxin-7-like protein 1 isoform X1"
                     /calculated_mol_wt=92797
     Region          292..353
                     /region_name="SCA7"
                     /note="zinc-binding domain; pfam08313"
                     /db_xref="CDD:462422"
     CDS             1..869
                     /gene="ATXN7L1"
                     /coded_by="XM_054049810.1:14..2623"
                     /db_xref="GeneID:104056070"
ORIGIN      
        1 mtcgvlesrv slarsppppp ketgkasrrg amaalerpvp speaflgqpw aawvreaapp
       61 hahgaapphs vdleetgkeg gksrevmrln kedmhlfghy pahddfylvv cnicnqvvkp
      121 qvfqshcerr hgsmckpsps paspacnsrt slvqmkpksc isghnpvssn skpfktpkdn
      181 lltssskqht vfpskvsrdk pcvpvpvvsl ekipnlvkad ganvkmnsat tttvtsssas
      241 sstipaptlv ksgltsksvp pspekilngk giiapsidkk hqngtkssnk pykrlseref
      301 dpnkhcgvld petkkpctrs ltckthslnh rravpgrkkq fdillaehka rsrekevakd
      361 kehppsares yqsqptpaqd slsgssvtsg qeskvtspak srppnsvlpr pssansinsn
      421 sssnhsgyip elplpsmggd ltsrlssdeg eadgaeepek ldchfsghhp rplgfcsygs
      481 rlmgrgyyvf drrwdhfrfa lnsmvekhln sqmwkkippa adspmpspaa hvstpfpasv
      541 lqpfsnpsav yipstpissr itsssyimts amlsnaafvt tsdtnsimsh tttfphvaas
      601 lsimdstfka psavspvpav ipspshkpsk tktsksskvk dlssrsddss snkkkkpqss
      661 sssssslslq tsssssfsgs hkkncvlnps stlnsyqats synsmsvhnt nngtsplsak
      721 sepsgrtsls ssstdsvkhm smvvssidss nlsvsslvhh sgdhslgahn tvsslplsfd
      781 ksegkkrkns sssskackit kmpgmnsvhr kstanlisav pdptsssisr qigknssval
      841 sqsspsstsn pvhnrqktsn rtgrirtlp
//
LOCUS       XP_053905794             858 aa            linear   VRT 09-MAR-2023
DEFINITION  ataxin-7-like protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053905794
VERSION     XP_053905794.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049819.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..858
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..858
                     /product="ataxin-7-like protein 1 isoform X2"
                     /calculated_mol_wt=91565
     Region          292..353
                     /region_name="SCA7"
                     /note="zinc-binding domain; pfam08313"
                     /db_xref="CDD:462422"
     CDS             1..858
                     /gene="ATXN7L1"
                     /coded_by="XM_054049819.1:14..2590"
                     /db_xref="GeneID:104056070"
ORIGIN      
        1 mtcgvlesrv slarsppppp ketgkasrrg amaalerpvp speaflgqpw aawvreaapp
       61 hahgaapphs vdleetgkeg gksrevmrln kedmhlfghy pahddfylvv cnicnqvvkp
      121 qvfqshcerr hgsmckpsps paspacnsrt slvqmkpksc isghnpvssn skpfktpkdn
      181 lltssskqht vfpskvsrdk pcvpvpvvsl ekipnlvkad ganvkmnsat tttvtsssas
      241 sstipaptlv ksgltsksvp pspekilngk giiapsidkk hqngtkssnk pykrlseref
      301 dpnkhcgvld petkkpctrs ltckthslnh rravpgrkkq fdillaehka rsrekevakd
      361 kehppsares yqsqptpaqd slsgssvtsg qeskvtspak srppnsvlpr pssansinsn
      421 sssnhsgyip elplpsmggd ltsrlssdeg eadgaeepek ldchfsghhp rplgfcsygs
      481 rlmgrgyyvf drrwdhfrfa lnsmvekhln sqmwkkippa adspmpspaa hvstpfpasv
      541 lqpfsnpsav yipstpissr itsssyimts amlsnaafvt tsdtnsimsh tttfphvaas
      601 lsimdstfka psavspvpav ipspshkpsk tktsksskvk dlssrsddss snkkkkpqss
      661 sssssslslq tsssssfsgs hkkncvlnps stlnsyqats synsmsvhnt nngtsplsak
      721 sepsgrtsls ssstdsvkhm smvvssidss nlsvsslvhh sgdhslgahn tvsslplsfd
      781 ksegkkrkns sssskackit kmpgmnsvhr kstanlisav pdptsssisr qigknssval
      841 sqsspsstsn pvhnrqcf
//
LOCUS       XP_053905804             834 aa            linear   VRT 09-MAR-2023
DEFINITION  ataxin-7-like protein 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053905804
VERSION     XP_053905804.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049829.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..834
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..834
                     /product="ataxin-7-like protein 1 isoform X3"
                     /calculated_mol_wt=88709
     Region          257..318
                     /region_name="SCA7"
                     /note="zinc-binding domain; pfam08313"
                     /db_xref="CDD:462422"
     CDS             1..834
                     /gene="ATXN7L1"
                     /coded_by="XM_054049829.1:14..2518"
                     /db_xref="GeneID:104056070"
ORIGIN      
        1 mtcgvlesrv slarsppppp ketgkasrrg amaalerpvp speaflgqpw aawvreaapp
       61 hahgaapphs vdleetgkeg gksrevmrln keerrhgsmc kpspspaspa cnsrtslvqm
      121 kpkscisghn pvssnskpfk tpkdnlltss skqhtvfpsk vsrdkpcvpv pvvslekipn
      181 lvkadganvk mnsattttvt sssassstip aptlvksglt sksvppspek ilngkgiiap
      241 sidkkhqngt kssnkpykrl serefdpnkh cgvldpetkk pctrsltckt hslnhrravp
      301 grkkqfdill aehkarsrek evakdkehpp saresyqsqp tpaqdslsgs svtsgqeskv
      361 tspaksrppn svlprpssan sinsnsssnh sgyipelplp smggdltsrl ssdegeadga
      421 eepekldchf sghhprplgf csygsrlmgr gyyvfdrrwd hfrfalnsmv ekhlnsqmwk
      481 kippaadspm pspaahvstp fpasvlqpfs npsavyipst pissritsss yimtsamlsn
      541 aafvttsdtn simshtttfp hvaaslsimd stfkapsavs pvpavipsps hkpsktktsk
      601 sskvkdlssr sddsssnkkk kpqsssssss slslqtssss sfsgshkknc vlnpsstlns
      661 yqatssynsm svhntnngts plsaksepsg rtslsssstd svkhmsmvvs sidssnlsvs
      721 slvhhsgdhs lgahntvssl plsfdksegk krknsssssk ackitkmpgm nsvhrkstan
      781 lisavpdpts ssisrqigkn ssvalsqssp sstsnpvhnr qktsnrtgri rtlp
//
LOCUS       XP_053905814             736 aa            linear   VRT 09-MAR-2023
DEFINITION  ataxin-7-like protein 1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053905814
VERSION     XP_053905814.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049839.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..736
                     /product="ataxin-7-like protein 1 isoform X4"
                     /calculated_mol_wt=78190
     Region          159..220
                     /region_name="SCA7"
                     /note="zinc-binding domain; pfam08313"
                     /db_xref="CDD:462422"
     CDS             1..736
                     /gene="ATXN7L1"
                     /coded_by="XM_054049839.1:149..2359"
                     /db_xref="GeneID:104056070"
ORIGIN      
        1 mckpspspas pacnsrtslv qmkpkscisg hnpvssnskp fktpkdnllt ssskqhtvfp
       61 skvsrdkpcv pvpvvsleki pnlvkadgan vkmnsatttt vtsssassst ipaptlvksg
      121 ltsksvppsp ekilngkgii apsidkkhqn gtkssnkpyk rlserefdpn khcgvldpet
      181 kkpctrsltc kthslnhrra vpgrkkqfdi llaehkarsr ekevakdkeh ppsaresyqs
      241 qptpaqdsls gssvtsgqes kvtspaksrp pnsvlprpss ansinsnsss nhsgyipelp
      301 lpsmggdlts rlssdegead gaeepekldc hfsghhprpl gfcsygsrlm grgyyvfdrr
      361 wdhfrfalns mvekhlnsqm wkkippaads pmpspaahvs tpfpasvlqp fsnpsavyip
      421 stpissrits ssyimtsaml snaafvttsd tnsimshttt fphvaaslsi mdstfkapsa
      481 vspvpavips pshkpsktkt sksskvkdls srsddsssnk kkkpqsssss ssslslqtss
      541 sssfsgshkk ncvlnpsstl nsyqatssyn smsvhntnng tsplsaksep sgrtslssss
      601 tdsvkhmsmv vssidssnls vsslvhhsgd hslgahntvs slplsfdkse gkkrknssss
      661 skackitkmp gmnsvhrkst anlisavpdp tsssisrqig knssvalsqs spsstsnpvh
      721 nrqktsnrtg rirtlp
//
LOCUS       XP_053905818             765 aa            linear   VRT 09-MAR-2023
DEFINITION  ataxin-7-like protein 1 isoform X5 [Cuculus canorus].
ACCESSION   XP_053905818
VERSION     XP_053905818.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049843.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..765
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..765
                     /product="ataxin-7-like protein 1 isoform X5"
                     /calculated_mol_wt=81528
     Region          188..249
                     /region_name="SCA7"
                     /note="zinc-binding domain; pfam08313"
                     /db_xref="CDD:462422"
     CDS             1..765
                     /gene="ATXN7L1"
                     /coded_by="XM_054049843.1:197..2494"
                     /db_xref="GeneID:104056070"
ORIGIN      
        1 mektltvgkn csldlinfeq hvlerrhgsm ckpspspasp acnsrtslvq mkpkscisgh
       61 npvssnskpf ktpkdnllts sskqhtvfps kvsrdkpcvp vpvvslekip nlvkadganv
      121 kmnsattttv tsssasssti paptlvksgl tsksvppspe kilngkgiia psidkkhqng
      181 tkssnkpykr lserefdpnk hcgvldpetk kpctrsltck thslnhrrav pgrkkqfdil
      241 laehkarsre kevakdkehp psaresyqsq ptpaqdslsg ssvtsgqesk vtspaksrpp
      301 nsvlprpssa nsinsnsssn hsgyipelpl psmggdltsr lssdegeadg aeepekldch
      361 fsghhprplg fcsygsrlmg rgyyvfdrrw dhfrfalnsm vekhlnsqmw kkippaadsp
      421 mpspaahvst pfpasvlqpf snpsavyips tpissritss syimtsamls naafvttsdt
      481 nsimshtttf phvaaslsim dstfkapsav spvpavipsp shkpsktkts ksskvkdlss
      541 rsddsssnkk kkpqssssss sslslqtsss ssfsgshkkn cvlnpsstln syqatssyns
      601 msvhntnngt splsakseps grtslsssst dsvkhmsmvv ssidssnlsv sslvhhsgdh
      661 slgahntvss lplsfdkseg kkrknsssss kackitkmpg mnsvhrksta nlisavpdpt
      721 sssisrqigk nssvalsqss psstsnpvhn rqktsnrtgr irtlp
//
LOCUS       XP_053905828             745 aa            linear   VRT 09-MAR-2023
DEFINITION  ataxin-7-like protein 1 isoform X6 [Cuculus canorus].
ACCESSION   XP_053905828
VERSION     XP_053905828.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049853.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..745
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..745
                     /product="ataxin-7-like protein 1 isoform X6"
                     /calculated_mol_wt=79228
     Region          168..229
                     /region_name="SCA7"
                     /note="zinc-binding domain; pfam08313"
                     /db_xref="CDD:462422"
     CDS             1..745
                     /gene="ATXN7L1"
                     /coded_by="XM_054049853.1:103..2340"
                     /db_xref="GeneID:104056070"
ORIGIN      
        1 malerrhgsm ckpspspasp acnsrtslvq mkpkscisgh npvssnskpf ktpkdnllts
       61 sskqhtvfps kvsrdkpcvp vpvvslekip nlvkadganv kmnsattttv tsssasssti
      121 paptlvksgl tsksvppspe kilngkgiia psidkkhqng tkssnkpykr lserefdpnk
      181 hcgvldpetk kpctrsltck thslnhrrav pgrkkqfdil laehkarsre kevakdkehp
      241 psaresyqsq ptpaqdslsg ssvtsgqesk vtspaksrpp nsvlprpssa nsinsnsssn
      301 hsgyipelpl psmggdltsr lssdegeadg aeepekldch fsghhprplg fcsygsrlmg
      361 rgyyvfdrrw dhfrfalnsm vekhlnsqmw kkippaadsp mpspaahvst pfpasvlqpf
      421 snpsavyips tpissritss syimtsamls naafvttsdt nsimshtttf phvaaslsim
      481 dstfkapsav spvpavipsp shkpsktkts ksskvkdlss rsddsssnkk kkpqssssss
      541 sslslqtsss ssfsgshkkn cvlnpsstln syqatssyns msvhntnngt splsakseps
      601 grtslsssst dsvkhmsmvv ssidssnlsv sslvhhsgdh slgahntvss lplsfdkseg
      661 kkrknsssss kackitkmpg mnsvhrksta nlisavpdpt sssisrqigk nssvalsqss
      721 psstsnpvhn rqktsnrtgr irtlp
//
LOCUS       XP_053905835             736 aa            linear   VRT 09-MAR-2023
DEFINITION  ataxin-7-like protein 1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053905835
VERSION     XP_053905835.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049860.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..736
                     /product="ataxin-7-like protein 1 isoform X4"
                     /calculated_mol_wt=78190
     Region          159..220
                     /region_name="SCA7"
                     /note="zinc-binding domain; pfam08313"
                     /db_xref="CDD:462422"
     CDS             1..736
                     /gene="ATXN7L1"
                     /coded_by="XM_054049860.1:337..2547"
                     /db_xref="GeneID:104056070"
ORIGIN      
        1 mckpspspas pacnsrtslv qmkpkscisg hnpvssnskp fktpkdnllt ssskqhtvfp
       61 skvsrdkpcv pvpvvsleki pnlvkadgan vkmnsatttt vtsssassst ipaptlvksg
      121 ltsksvppsp ekilngkgii apsidkkhqn gtkssnkpyk rlserefdpn khcgvldpet
      181 kkpctrsltc kthslnhrra vpgrkkqfdi llaehkarsr ekevakdkeh ppsaresyqs
      241 qptpaqdsls gssvtsgqes kvtspaksrp pnsvlprpss ansinsnsss nhsgyipelp
      301 lpsmggdlts rlssdegead gaeepekldc hfsghhprpl gfcsygsrlm grgyyvfdrr
      361 wdhfrfalns mvekhlnsqm wkkippaads pmpspaahvs tpfpasvlqp fsnpsavyip
      421 stpissrits ssyimtsaml snaafvttsd tnsimshttt fphvaaslsi mdstfkapsa
      481 vspvpavips pshkpsktkt sksskvkdls srsddsssnk kkkpqsssss ssslslqtss
      541 sssfsgshkk ncvlnpsstl nsyqatssyn smsvhntnng tsplsaksep sgrtslssss
      601 tdsvkhmsmv vssidssnls vsslvhhsgd hslgahntvs slplsfdkse gkkrknssss
      661 skackitkmp gmnsvhrkst anlisavpdp tsssisrqig knssvalsqs spsstsnpvh
      721 nrqktsnrtg rirtlp
//
LOCUS       XP_053905844             736 aa            linear   VRT 09-MAR-2023
DEFINITION  ataxin-7-like protein 1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053905844
VERSION     XP_053905844.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049869.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..736
                     /product="ataxin-7-like protein 1 isoform X4"
                     /calculated_mol_wt=78190
     Region          159..220
                     /region_name="SCA7"
                     /note="zinc-binding domain; pfam08313"
                     /db_xref="CDD:462422"
     CDS             1..736
                     /gene="ATXN7L1"
                     /coded_by="XM_054049869.1:186..2396"
                     /db_xref="GeneID:104056070"
ORIGIN      
        1 mckpspspas pacnsrtslv qmkpkscisg hnpvssnskp fktpkdnllt ssskqhtvfp
       61 skvsrdkpcv pvpvvsleki pnlvkadgan vkmnsatttt vtsssassst ipaptlvksg
      121 ltsksvppsp ekilngkgii apsidkkhqn gtkssnkpyk rlserefdpn khcgvldpet
      181 kkpctrsltc kthslnhrra vpgrkkqfdi llaehkarsr ekevakdkeh ppsaresyqs
      241 qptpaqdsls gssvtsgqes kvtspaksrp pnsvlprpss ansinsnsss nhsgyipelp
      301 lpsmggdlts rlssdegead gaeepekldc hfsghhprpl gfcsygsrlm grgyyvfdrr
      361 wdhfrfalns mvekhlnsqm wkkippaads pmpspaahvs tpfpasvlqp fsnpsavyip
      421 stpissrits ssyimtsaml snaafvttsd tnsimshttt fphvaaslsi mdstfkapsa
      481 vspvpavips pshkpsktkt sksskvkdls srsddsssnk kkkpqsssss ssslslqtss
      541 sssfsgshkk ncvlnpsstl nsyqatssyn smsvhntnng tsplsaksep sgrtslssss
      601 tdsvkhmsmv vssidssnls vsslvhhsgd hslgahntvs slplsfdkse gkkrknssss
      661 skackitkmp gmnsvhrkst anlisavpdp tsssisrqig knssvalsqs spsstsnpvh
      721 nrqktsnrtg rirtlp
//
LOCUS       XP_053905849             736 aa            linear   VRT 09-MAR-2023
DEFINITION  ataxin-7-like protein 1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053905849
VERSION     XP_053905849.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049874.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..736
                     /product="ataxin-7-like protein 1 isoform X4"
                     /calculated_mol_wt=78190
     Region          159..220
                     /region_name="SCA7"
                     /note="zinc-binding domain; pfam08313"
                     /db_xref="CDD:462422"
     CDS             1..736
                     /gene="ATXN7L1"
                     /coded_by="XM_054049874.1:161..2371"
                     /db_xref="GeneID:104056070"
ORIGIN      
        1 mckpspspas pacnsrtslv qmkpkscisg hnpvssnskp fktpkdnllt ssskqhtvfp
       61 skvsrdkpcv pvpvvsleki pnlvkadgan vkmnsatttt vtsssassst ipaptlvksg
      121 ltsksvppsp ekilngkgii apsidkkhqn gtkssnkpyk rlserefdpn khcgvldpet
      181 kkpctrsltc kthslnhrra vpgrkkqfdi llaehkarsr ekevakdkeh ppsaresyqs
      241 qptpaqdsls gssvtsgqes kvtspaksrp pnsvlprpss ansinsnsss nhsgyipelp
      301 lpsmggdlts rlssdegead gaeepekldc hfsghhprpl gfcsygsrlm grgyyvfdrr
      361 wdhfrfalns mvekhlnsqm wkkippaads pmpspaahvs tpfpasvlqp fsnpsavyip
      421 stpissrits ssyimtsaml snaafvttsd tnsimshttt fphvaaslsi mdstfkapsa
      481 vspvpavips pshkpsktkt sksskvkdls srsddsssnk kkkpqsssss ssslslqtss
      541 sssfsgshkk ncvlnpsstl nsyqatssyn smsvhntnng tsplsaksep sgrtslssss
      601 tdsvkhmsmv vssidssnls vsslvhhsgd hslgahntvs slplsfdkse gkkrknssss
      661 skackitkmp gmnsvhrkst anlisavpdp tsssisrqig knssvalsqs spsstsnpvh
      721 nrqktsnrtg rirtlp
//
LOCUS       XP_053905856             273 aa            linear   VRT 09-MAR-2023
DEFINITION  adaptin ear-binding coat-associated protein 1 [Cuculus canorus].
ACCESSION   XP_053905856
VERSION     XP_053905856.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049881.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..273
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..273
                     /product="adaptin ear-binding coat-associated protein 1"
                     /calculated_mol_wt=29215
     Region          8..165
                     /region_name="DUF1681"
                     /note="Protein of unknown function (DUF1681); pfam07933"
                     /db_xref="CDD:462320"
     Region          <173..>256
                     /region_name="PHA03381"
                     /note="tegument protein VP22; Provisional"
                     /db_xref="CDD:177618"
     CDS             1..273
                     /gene="NECAP1"
                     /coded_by="XM_054049881.1:187..1008"
                     /db_xref="GeneID:104060662"
ORIGIN      
        1 maaaeleyes vlcvkpdvnv yripprasnr gyrasdwkld hpdwtgrlrv tskgktayik
       61 ledkvsgelf aqapidqypg iavetvtdss ryfviriqdg tgrsafigig ftdrgdafdf
      121 nvslqdhfkw vkqeteiske sqeadtrpkl dlgfkegqti klnignmtkk ggaakprasg
      181 sgslsllppp pggkiavspi pppsstaian hvtpppllks snmssadvll dldapasavk
      241 apasattdlw gdfstassav pnqapqqssw vqf
//
LOCUS       XP_053905862             699 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium/hydrogen exchanger 7 isoform X1 [Cuculus canorus].
ACCESSION   XP_053905862
VERSION     XP_053905862.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049887.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..699
                     /product="sodium/hydrogen exchanger 7 isoform X1"
                     /calculated_mol_wt=77689
     Region          67..>523
                     /region_name="Na_H_Exchanger"
                     /note="Sodium/hydrogen exchanger family; cl01133"
                     /db_xref="CDD:470090"
     CDS             1..699
                     /gene="SLC9A7"
                     /coded_by="XM_054049887.1:139..2238"
                     /db_xref="GeneID:104063735"
ORIGIN      
        1 marlppllll pvlsaggaae rggsssamee lateqeaees hrqdsvsllt fillltltil
       61 tiwlfkhrrv rflhetglam iyglivgvil rygtpstsgr dkpfscsled rpfttllvnv
      121 sgkffeytlk geispgkihn veqndmlrkv tfdpevffni llppiifhag yslkkrhffr
      181 nlgsilayaf lgtavscfii gnlmygvvkl mklvgqlsdk fyytdclffg aiisatdpvt
      241 vlaifnelha dvdlyallfg esvlndavai vlsssivayq ptgenthafd aaaffksvgv
      301 flgifsgsfm mgavtgvvta lvtkftklhc fplletalff lmswstflla eacgftgvva
      361 vlfcgitqah ytynnlsves rsrtkqlfev lhflaenfif symglalftf qkhifspvfi
      421 igafiaiffg raahiyplsf llnlgrrhki swnfqhmmmf sglrgamafa lairdtatys
      481 hqmmfsttll ivfftvwivg ggttpmlswl nirvgdrvps veemsescwl ysrvgvdpdq
      541 dppptndsfq vlqgdgpdse rrnrtkqesa wlfrlwysfd hnylkpilth sgppltttlp
      601 swcgliarcl tspqvydnqe qlreedsdfi lndgdltvty gdttitangs sgphtattsl
      661 dgrrtkssse ealerdlgva dheitsrgtr lvfpledna
//
LOCUS       XP_053905872             679 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium/hydrogen exchanger 7 isoform X2 [Cuculus canorus].
ACCESSION   XP_053905872
VERSION     XP_053905872.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049897.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..679
                     /product="sodium/hydrogen exchanger 7 isoform X2"
                     /calculated_mol_wt=75377
     Region          67..569
                     /region_name="Na_H_Exchanger"
                     /note="Sodium/hydrogen exchanger family; cl01133"
                     /db_xref="CDD:470090"
     CDS             1..679
                     /gene="SLC9A7"
                     /coded_by="XM_054049897.1:138..2177"
                     /db_xref="GeneID:104063735"
ORIGIN      
        1 marlppllll pvlsaggaae rggsssamee lateqeaees hrqdsvsllt fillltltil
       61 tiwlfkhrrv rflhetglam iyglivgvil rygtpstsgr dkpfscsled rpfttllvnv
      121 sgkffeytlk geispgkihn veqndmlrkv tfdpevffni llppiifhag yslkkrhffr
      181 nlgsilayaf lgtavscfii gnlmygvvkl mklvgqlsdk fyytdclffg aiisatdpvt
      241 vlaifnelha dvdlyallfg esvlndavai vlsssivayq ptgenthafd aaaffksvgv
      301 flgifsgsfm mgavtgvvta lvtkftklhc fplletalff lmswstflla eacgftgvva
      361 vlfcgitqah ytynnlsves rsrtkqlfev lhflaenfif symglalftf qkhifspvfi
      421 igafiaiffg raahiyplsf llnlgrrhki swnfqhmmmf sglrgamafa lairdtatys
      481 hqmmfsttll ivfftvwivg ggttpmlswl nirvgvdpdq dppptndsfq vlqgdgpdse
      541 rrnrtkqesa wlfrlwysfd hnylkpilth sgppltttlp swcgliarcl tspqvydnqe
      601 qlreedsdfi lndgdltvty gdttitangs sgphtattsl dgrrtkssse ealerdlgva
      661 dheitsrgtr lvfpledna
//
LOCUS       XP_053905885             496 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier family 2, facilitated glucose transporter member 3
            [Cuculus canorus].
ACCESSION   XP_053905885
VERSION     XP_053905885.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049910.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..496
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..496
                     /product="solute carrier family 2, facilitated glucose
                     transporter member 3"
                     /calculated_mol_wt=54028
     Region          13..457
                     /region_name="MFS_GLUT_Class1"
                     /note="Class 1 Glucose transporters (GLUTs) of the Major
                     Facilitator Superfamily; cd17431"
                     /db_xref="CDD:340989"
     Site            order(25,29,160,163..164,167,281..282,286..287,290,316,
                     378..379,383,387,410,414)
                     /site_type="other"
                     /note="chemical substrate binding pocket [chemical
                     binding]"
                     /db_xref="CDD:340989"
     CDS             1..496
                     /gene="LOC104060637"
                     /coded_by="XM_054049910.1:124..1614"
                     /db_xref="GeneID:104060637"
ORIGIN      
        1 mdgkkkitap llyavsiaai gslqfgyntg vinapekiiq nffnrtlser kgeaispell
       61 tsmwslsvai fsvggmigsf svsvfanrlg rrnsmllvni lafvggtlma fskmakamem
      121 liigrfiigi fcglctgfvp myisevspts lrgafgtlnq lgivvgilva qifglqsimg
      181 tealwplllg ftilpallqc vallfcpesp rfllinkmee ekaqavlqkl rgtqdvsqdi
      241 lemkeesakm sqekkatvae lfrspsyrqa iiiaimlqls qqlsginavf yystgifera
      301 gitqpvyati gagvvntvft vvslflvera grrtlhlvgl ggmavcaavm tialalkdiv
      361 ewiryisiva tfgfvalfev gpgpipwfiv aelfsqgprp aamavagcsn wtsnflvgml
      421 fpyaeklcgs yvfliflvfl viffvftffk vpetkgrtfe disrgfegra earptspvek
      481 npmvemnsiq pdkeva
//
LOCUS       XP_053905899             624 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily C member 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053905899
VERSION     XP_053905899.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049924.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..624
                     /product="potassium voltage-gated channel subfamily C
                     member 2 isoform X1"
                     /calculated_mol_wt=68737
     Region          7..149
                     /region_name="BTB_KCNC2_4"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     voltage-gated channel subfamily C members KCNC2 and KCNC4;
                     cd18415"
                     /db_xref="CDD:349722"
     Site            order(13,15..22,25,86,88..89,92,95,99,102,105,107,
                     115..116,119)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:349722"
     Region          212..468
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..624
                     /gene="KCNC2"
                     /coded_by="XM_054049924.1:345..2219"
                     /db_xref="GeneID:104061146"
ORIGIN      
        1 mgklednerv ilnvggtrhe tyrstlktlp gtrlallace slsespggee ppppppppnp
       61 appvggcpep gsgcstrdsa aasefffdrh pgvfayvlny yrtgklhcpa dvcgplfeee
      121 lafwgidetd vepccwmtyr qhrdaeeald ifeapdlltg eppldgdddd laakrlgied
      181 vgatadgkgg rwrrlqprvw alfedpyssr aarfiafasl ffilvsittf cletheafnt
      241 iinkteqvin gtetvlqyei etdpaltyve gvcvvwftfe flvrvvfspn klefiknlln
      301 iidfvailpf ylevglsgls skaakdvlgf lrvvrfvril rifkltrhfv glrvlghtlr
      361 astnefllli iflalgvlif atmiyyaerv gaqpndpsas ehtqfknipi gfwwavvtmt
      421 tlgygdmypr twsgmlvgal calagvltia mpvpvivnnf gmyyslamak qklprkrkkh
      481 ippapqassp tfcktdlnma cnstqgdicl gkdnqlmehn rssvlsgeds agseqplspg
      541 erlppirrss trdknrrggt cfllttsdyt catdggirkg yeksrslnni agltgnalrl
      601 spvtspyssp cplrrsrspi psil
//
LOCUS       XP_053905909             624 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily C member 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053905909
VERSION     XP_053905909.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049934.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..624
                     /product="potassium voltage-gated channel subfamily C
                     member 2 isoform X1"
                     /calculated_mol_wt=68737
     Region          7..149
                     /region_name="BTB_KCNC2_4"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     voltage-gated channel subfamily C members KCNC2 and KCNC4;
                     cd18415"
                     /db_xref="CDD:349722"
     Site            order(13,15..22,25,86,88..89,92,95,99,102,105,107,
                     115..116,119)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:349722"
     Region          212..468
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..624
                     /gene="KCNC2"
                     /coded_by="XM_054049934.1:401..2275"
                     /db_xref="GeneID:104061146"
ORIGIN      
        1 mgklednerv ilnvggtrhe tyrstlktlp gtrlallace slsespggee ppppppppnp
       61 appvggcpep gsgcstrdsa aasefffdrh pgvfayvlny yrtgklhcpa dvcgplfeee
      121 lafwgidetd vepccwmtyr qhrdaeeald ifeapdlltg eppldgdddd laakrlgied
      181 vgatadgkgg rwrrlqprvw alfedpyssr aarfiafasl ffilvsittf cletheafnt
      241 iinkteqvin gtetvlqyei etdpaltyve gvcvvwftfe flvrvvfspn klefiknlln
      301 iidfvailpf ylevglsgls skaakdvlgf lrvvrfvril rifkltrhfv glrvlghtlr
      361 astnefllli iflalgvlif atmiyyaerv gaqpndpsas ehtqfknipi gfwwavvtmt
      421 tlgygdmypr twsgmlvgal calagvltia mpvpvivnnf gmyyslamak qklprkrkkh
      481 ippapqassp tfcktdlnma cnstqgdicl gkdnqlmehn rssvlsgeds agseqplspg
      541 erlppirrss trdknrrggt cfllttsdyt catdggirkg yeksrslnni agltgnalrl
      601 spvtspyssp cplrrsrspi psil
//
LOCUS       XP_053905918             624 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily C member 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053905918
VERSION     XP_053905918.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049943.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..624
                     /product="potassium voltage-gated channel subfamily C
                     member 2 isoform X1"
                     /calculated_mol_wt=68737
     Region          7..149
                     /region_name="BTB_KCNC2_4"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     voltage-gated channel subfamily C members KCNC2 and KCNC4;
                     cd18415"
                     /db_xref="CDD:349722"
     Site            order(13,15..22,25,86,88..89,92,95,99,102,105,107,
                     115..116,119)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:349722"
     Region          212..468
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..624
                     /gene="KCNC2"
                     /coded_by="XM_054049943.1:253..2127"
                     /db_xref="GeneID:104061146"
ORIGIN      
        1 mgklednerv ilnvggtrhe tyrstlktlp gtrlallace slsespggee ppppppppnp
       61 appvggcpep gsgcstrdsa aasefffdrh pgvfayvlny yrtgklhcpa dvcgplfeee
      121 lafwgidetd vepccwmtyr qhrdaeeald ifeapdlltg eppldgdddd laakrlgied
      181 vgatadgkgg rwrrlqprvw alfedpyssr aarfiafasl ffilvsittf cletheafnt
      241 iinkteqvin gtetvlqyei etdpaltyve gvcvvwftfe flvrvvfspn klefiknlln
      301 iidfvailpf ylevglsgls skaakdvlgf lrvvrfvril rifkltrhfv glrvlghtlr
      361 astnefllli iflalgvlif atmiyyaerv gaqpndpsas ehtqfknipi gfwwavvtmt
      421 tlgygdmypr twsgmlvgal calagvltia mpvpvivnnf gmyyslamak qklprkrkkh
      481 ippapqassp tfcktdlnma cnstqgdicl gkdnqlmehn rssvlsgeds agseqplspg
      541 erlppirrss trdknrrggt cfllttsdyt catdggirkg yeksrslnni agltgnalrl
      601 spvtspyssp cplrrsrspi psil
//
LOCUS       XP_053905928             624 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily C member 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053905928
VERSION     XP_053905928.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049953.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..624
                     /product="potassium voltage-gated channel subfamily C
                     member 2 isoform X1"
                     /calculated_mol_wt=68737
     Region          7..149
                     /region_name="BTB_KCNC2_4"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     voltage-gated channel subfamily C members KCNC2 and KCNC4;
                     cd18415"
                     /db_xref="CDD:349722"
     Site            order(13,15..22,25,86,88..89,92,95,99,102,105,107,
                     115..116,119)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:349722"
     Region          212..468
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..624
                     /gene="KCNC2"
                     /coded_by="XM_054049953.1:341..2215"
                     /db_xref="GeneID:104061146"
ORIGIN      
        1 mgklednerv ilnvggtrhe tyrstlktlp gtrlallace slsespggee ppppppppnp
       61 appvggcpep gsgcstrdsa aasefffdrh pgvfayvlny yrtgklhcpa dvcgplfeee
      121 lafwgidetd vepccwmtyr qhrdaeeald ifeapdlltg eppldgdddd laakrlgied
      181 vgatadgkgg rwrrlqprvw alfedpyssr aarfiafasl ffilvsittf cletheafnt
      241 iinkteqvin gtetvlqyei etdpaltyve gvcvvwftfe flvrvvfspn klefiknlln
      301 iidfvailpf ylevglsgls skaakdvlgf lrvvrfvril rifkltrhfv glrvlghtlr
      361 astnefllli iflalgvlif atmiyyaerv gaqpndpsas ehtqfknipi gfwwavvtmt
      421 tlgygdmypr twsgmlvgal calagvltia mpvpvivnnf gmyyslamak qklprkrkkh
      481 ippapqassp tfcktdlnma cnstqgdicl gkdnqlmehn rssvlsgeds agseqplspg
      541 erlppirrss trdknrrggt cfllttsdyt catdggirkg yeksrslnni agltgnalrl
      601 spvtspyssp cplrrsrspi psil
//
LOCUS       XP_053905942             621 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily C member 2 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053905942
VERSION     XP_053905942.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049967.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..621
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..621
                     /product="potassium voltage-gated channel subfamily C
                     member 2 isoform X2"
                     /calculated_mol_wt=68438
     Region          7..149
                     /region_name="BTB_KCNC2_4"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     voltage-gated channel subfamily C members KCNC2 and KCNC4;
                     cd18415"
                     /db_xref="CDD:349722"
     Site            order(13,15..22,25,86,88..89,92,95,99,102,105,107,
                     115..116,119)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:349722"
     Region          212..468
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..621
                     /gene="KCNC2"
                     /coded_by="XM_054049967.1:348..2213"
                     /db_xref="GeneID:104061146"
ORIGIN      
        1 mgklednerv ilnvggtrhe tyrstlktlp gtrlallace slsespggee ppppppppnp
       61 appvggcpep gsgcstrdsa aasefffdrh pgvfayvlny yrtgklhcpa dvcgplfeee
      121 lafwgidetd vepccwmtyr qhrdaeeald ifeapdlltg eppldgdddd laakrlgied
      181 vgatadgkgg rwrrlqprvw alfedpyssr aarfiafasl ffilvsittf cletheafnt
      241 iinkteqvin gtetvlqyei etdpaltyve gvcvvwftfe flvrvvfspn klefiknlln
      301 iidfvailpf ylevglsgls skaakdvlgf lrvvrfvril rifkltrhfv glrvlghtlr
      361 astnefllli iflalgvlif atmiyyaerv gaqpndpsas ehtqfknipi gfwwavvtmt
      421 tlgygdmypr twsgmlvgal calagvltia mpvpvivnnf gmyyslamak qklprkrkkh
      481 ippapqassp tfcktdlnma cnstqgdicl gkdnqlmehn rssgedsags eqplspgerl
      541 ppirrsstrd knrrggtcfl lttsdytcat dggirkgyek srslnniagl tgnalrlspv
      601 tspysspcpl rrsrspipsi l
//
LOCUS       XP_053905950             615 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily C member 2 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053905950
VERSION     XP_053905950.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049975.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..615
                     /product="potassium voltage-gated channel subfamily C
                     member 2 isoform X3"
                     /calculated_mol_wt=68021
     Region          7..149
                     /region_name="BTB_KCNC2_4"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     voltage-gated channel subfamily C members KCNC2 and KCNC4;
                     cd18415"
                     /db_xref="CDD:349722"
     Site            order(13,15..22,25,86,88..89,92,95,99,102,105,107,
                     115..116,119)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:349722"
     Region          212..468
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..615
                     /gene="KCNC2"
                     /coded_by="XM_054049975.1:343..2190"
                     /db_xref="GeneID:104061146"
ORIGIN      
        1 mgklednerv ilnvggtrhe tyrstlktlp gtrlallace slsespggee ppppppppnp
       61 appvggcpep gsgcstrdsa aasefffdrh pgvfayvlny yrtgklhcpa dvcgplfeee
      121 lafwgidetd vepccwmtyr qhrdaeeald ifeapdlltg eppldgdddd laakrlgied
      181 vgatadgkgg rwrrlqprvw alfedpyssr aarfiafasl ffilvsittf cletheafnt
      241 iinkteqvin gtetvlqyei etdpaltyve gvcvvwftfe flvrvvfspn klefiknlln
      301 iidfvailpf ylevglsgls skaakdvlgf lrvvrfvril rifkltrhfv glrvlghtlr
      361 astnefllli iflalgvlif atmiyyaerv gaqpndpsas ehtqfknipi gfwwavvtmt
      421 tlgygdmypr twsgmlvgal calagvltia mpvpvivnnf gmyyslamak qklprkrkkh
      481 ippapqassp tfcktdlnma cnstqgdicl gkdnqlmehn rssvlsgeds agseqplspg
      541 erlppirrss trdknrrggt cfllttsdyt catdggirkv lyriyhgflt aekgtmefsh
      601 tkdctgkrll llngp
//
LOCUS       XP_053905960             599 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily C member 2 isoform X4
            [Cuculus canorus].
ACCESSION   XP_053905960
VERSION     XP_053905960.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049985.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..599
                     /product="potassium voltage-gated channel subfamily C
                     member 2 isoform X4"
                     /calculated_mol_wt=66094
     Region          7..149
                     /region_name="BTB_KCNC2_4"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     voltage-gated channel subfamily C members KCNC2 and KCNC4;
                     cd18415"
                     /db_xref="CDD:349722"
     Site            order(13,15..22,25,86,88..89,92,95,99,102,105,107,
                     115..116,119)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:349722"
     Region          212..468
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..599
                     /gene="KCNC2"
                     /coded_by="XM_054049985.1:343..2142"
                     /db_xref="GeneID:104061146"
ORIGIN      
        1 mgklednerv ilnvggtrhe tyrstlktlp gtrlallace slsespggee ppppppppnp
       61 appvggcpep gsgcstrdsa aasefffdrh pgvfayvlny yrtgklhcpa dvcgplfeee
      121 lafwgidetd vepccwmtyr qhrdaeeald ifeapdlltg eppldgdddd laakrlgied
      181 vgatadgkgg rwrrlqprvw alfedpyssr aarfiafasl ffilvsittf cletheafnt
      241 iinkteqvin gtetvlqyei etdpaltyve gvcvvwftfe flvrvvfspn klefiknlln
      301 iidfvailpf ylevglsgls skaakdvlgf lrvvrfvril rifkltrhfv glrvlghtlr
      361 astnefllli iflalgvlif atmiyyaerv gaqpndpsas ehtqfknipi gfwwavvtmt
      421 tlgygdmypr twsgmlvgal calagvltia mpvpvivnnf gmyyslamak qklprkrkkh
      481 ippapqassp tfcktdlnma cnstqgdicl gkdnqlmehn rssvlsgeds agseqplspg
      541 erlppirrss trdknrrggt cfllttsdyt catdggirkd nckevvitgy tqaearsls
//
LOCUS       XP_053905969             599 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily C member 2 isoform X4
            [Cuculus canorus].
ACCESSION   XP_053905969
VERSION     XP_053905969.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054049994.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..599
                     /product="potassium voltage-gated channel subfamily C
                     member 2 isoform X4"
                     /calculated_mol_wt=66094
     Region          7..149
                     /region_name="BTB_KCNC2_4"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     voltage-gated channel subfamily C members KCNC2 and KCNC4;
                     cd18415"
                     /db_xref="CDD:349722"
     Site            order(13,15..22,25,86,88..89,92,95,99,102,105,107,
                     115..116,119)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:349722"
     Region          212..468
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..599
                     /gene="KCNC2"
                     /coded_by="XM_054049994.1:344..2143"
                     /db_xref="GeneID:104061146"
ORIGIN      
        1 mgklednerv ilnvggtrhe tyrstlktlp gtrlallace slsespggee ppppppppnp
       61 appvggcpep gsgcstrdsa aasefffdrh pgvfayvlny yrtgklhcpa dvcgplfeee
      121 lafwgidetd vepccwmtyr qhrdaeeald ifeapdlltg eppldgdddd laakrlgied
      181 vgatadgkgg rwrrlqprvw alfedpyssr aarfiafasl ffilvsittf cletheafnt
      241 iinkteqvin gtetvlqyei etdpaltyve gvcvvwftfe flvrvvfspn klefiknlln
      301 iidfvailpf ylevglsgls skaakdvlgf lrvvrfvril rifkltrhfv glrvlghtlr
      361 astnefllli iflalgvlif atmiyyaerv gaqpndpsas ehtqfknipi gfwwavvtmt
      421 tlgygdmypr twsgmlvgal calagvltia mpvpvivnnf gmyyslamak qklprkrkkh
      481 ippapqassp tfcktdlnma cnstqgdicl gkdnqlmehn rssvlsgeds agseqplspg
      541 erlppirrss trdknrrggt cfllttsdyt catdggirkd nckevvitgy tqaearsls
//
LOCUS       XP_053905977             579 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily C member 2 isoform X5
            [Cuculus canorus].
ACCESSION   XP_053905977
VERSION     XP_053905977.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050002.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..579
                     /product="potassium voltage-gated channel subfamily C
                     member 2 isoform X5"
                     /calculated_mol_wt=63801
     Region          7..149
                     /region_name="BTB_KCNC2_4"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     voltage-gated channel subfamily C members KCNC2 and KCNC4;
                     cd18415"
                     /db_xref="CDD:349722"
     Site            order(13,15..22,25,86,88..89,92,95,99,102,105,107,
                     115..116,119)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:349722"
     Region          212..468
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..579
                     /gene="KCNC2"
                     /coded_by="XM_054050002.1:346..2085"
                     /db_xref="GeneID:104061146"
ORIGIN      
        1 mgklednerv ilnvggtrhe tyrstlktlp gtrlallace slsespggee ppppppppnp
       61 appvggcpep gsgcstrdsa aasefffdrh pgvfayvlny yrtgklhcpa dvcgplfeee
      121 lafwgidetd vepccwmtyr qhrdaeeald ifeapdlltg eppldgdddd laakrlgied
      181 vgatadgkgg rwrrlqprvw alfedpyssr aarfiafasl ffilvsittf cletheafnt
      241 iinkteqvin gtetvlqyei etdpaltyve gvcvvwftfe flvrvvfspn klefiknlln
      301 iidfvailpf ylevglsgls skaakdvlgf lrvvrfvril rifkltrhfv glrvlghtlr
      361 astnefllli iflalgvlif atmiyyaerv gaqpndpsas ehtqfknipi gfwwavvtmt
      421 tlgygdmypr twsgmlvgal calagvltia mpvpvivnnf gmyyslamak qklprkrkkh
      481 ippapqassp tfcktdlnma cnstqgdicl gkdnqlmehn rssatvshpv glhgvlpqcl
      541 slvsalpvph rgllskilqr sshlkgagal nqkpstqrk
//
LOCUS       XP_053905985             559 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily C member 2 isoform X6
            [Cuculus canorus].
ACCESSION   XP_053905985
VERSION     XP_053905985.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050010.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..559
                     /product="potassium voltage-gated channel subfamily C
                     member 2 isoform X6"
                     /calculated_mol_wt=62027
     Region          7..149
                     /region_name="BTB_KCNC2_4"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     voltage-gated channel subfamily C members KCNC2 and KCNC4;
                     cd18415"
                     /db_xref="CDD:349722"
     Site            order(13,15..22,25,86,88..89,92,95,99,102,105,107,
                     115..116,119)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:349722"
     Region          212..468
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..559
                     /gene="KCNC2"
                     /coded_by="XM_054050010.1:343..2022"
                     /db_xref="GeneID:104061146"
ORIGIN      
        1 mgklednerv ilnvggtrhe tyrstlktlp gtrlallace slsespggee ppppppppnp
       61 appvggcpep gsgcstrdsa aasefffdrh pgvfayvlny yrtgklhcpa dvcgplfeee
      121 lafwgidetd vepccwmtyr qhrdaeeald ifeapdlltg eppldgdddd laakrlgied
      181 vgatadgkgg rwrrlqprvw alfedpyssr aarfiafasl ffilvsittf cletheafnt
      241 iinkteqvin gtetvlqyei etdpaltyve gvcvvwftfe flvrvvfspn klefiknlln
      301 iidfvailpf ylevglsgls skaakdvlgf lrvvrfvril rifkltrhfv glrvlghtlr
      361 astnefllli iflalgvlif atmiyyaerv gaqpndpsas ehtqfknipi gfwwavvtmt
      421 tlgygdmypr twsgmlvgal calagvltia mpvpvivnnf gmyyslamak qklprkrkkh
      481 ippapqassp tfcktdlnma cnstqgdicl gkdnqlmehn rssvlyriyh gfltaekgtm
      541 efshtkdctg krllllngp
//
LOCUS       XP_053905994             543 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily C member 2 isoform X7
            [Cuculus canorus].
ACCESSION   XP_053905994
VERSION     XP_053905994.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050019.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..543
                     /product="potassium voltage-gated channel subfamily C
                     member 2 isoform X7"
                     /calculated_mol_wt=60100
     Region          7..149
                     /region_name="BTB_KCNC2_4"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     voltage-gated channel subfamily C members KCNC2 and KCNC4;
                     cd18415"
                     /db_xref="CDD:349722"
     Site            order(13,15..22,25,86,88..89,92,95,99,102,105,107,
                     115..116,119)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:349722"
     Region          212..468
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..543
                     /gene="KCNC2"
                     /coded_by="XM_054050019.1:345..1976"
                     /db_xref="GeneID:104061146"
ORIGIN      
        1 mgklednerv ilnvggtrhe tyrstlktlp gtrlallace slsespggee ppppppppnp
       61 appvggcpep gsgcstrdsa aasefffdrh pgvfayvlny yrtgklhcpa dvcgplfeee
      121 lafwgidetd vepccwmtyr qhrdaeeald ifeapdlltg eppldgdddd laakrlgied
      181 vgatadgkgg rwrrlqprvw alfedpyssr aarfiafasl ffilvsittf cletheafnt
      241 iinkteqvin gtetvlqyei etdpaltyve gvcvvwftfe flvrvvfspn klefiknlln
      301 iidfvailpf ylevglsgls skaakdvlgf lrvvrfvril rifkltrhfv glrvlghtlr
      361 astnefllli iflalgvlif atmiyyaerv gaqpndpsas ehtqfknipi gfwwavvtmt
      421 tlgygdmypr twsgmlvgal calagvltia mpvpvivnnf gmyyslamak qklprkrkkh
      481 ippapqassp tfcktdlnma cnstqgdicl gkdnqlmehn rssdnckevv itgytqaear
      541 sls
//
LOCUS       XP_053906003             543 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily C member 2 isoform X7
            [Cuculus canorus].
ACCESSION   XP_053906003
VERSION     XP_053906003.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050028.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..543
                     /product="potassium voltage-gated channel subfamily C
                     member 2 isoform X7"
                     /calculated_mol_wt=60100
     Region          7..149
                     /region_name="BTB_KCNC2_4"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     voltage-gated channel subfamily C members KCNC2 and KCNC4;
                     cd18415"
                     /db_xref="CDD:349722"
     Site            order(13,15..22,25,86,88..89,92,95,99,102,105,107,
                     115..116,119)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:349722"
     Region          212..468
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..543
                     /gene="KCNC2"
                     /coded_by="XM_054050028.1:344..1975"
                     /db_xref="GeneID:104061146"
ORIGIN      
        1 mgklednerv ilnvggtrhe tyrstlktlp gtrlallace slsespggee ppppppppnp
       61 appvggcpep gsgcstrdsa aasefffdrh pgvfayvlny yrtgklhcpa dvcgplfeee
      121 lafwgidetd vepccwmtyr qhrdaeeald ifeapdlltg eppldgdddd laakrlgied
      181 vgatadgkgg rwrrlqprvw alfedpyssr aarfiafasl ffilvsittf cletheafnt
      241 iinkteqvin gtetvlqyei etdpaltyve gvcvvwftfe flvrvvfspn klefiknlln
      301 iidfvailpf ylevglsgls skaakdvlgf lrvvrfvril rifkltrhfv glrvlghtlr
      361 astnefllli iflalgvlif atmiyyaerv gaqpndpsas ehtqfknipi gfwwavvtmt
      421 tlgygdmypr twsgmlvgal calagvltia mpvpvivnnf gmyyslamak qklprkrkkh
      481 ippapqassp tfcktdlnma cnstqgdicl gkdnqlmehn rssdnckevv itgytqaear
      541 sls
//
LOCUS       XP_009561695            1032 aa            linear   VRT 09-MAR-2023
DEFINITION  F-box DNA helicase 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_009561695
VERSION     XP_009561695.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563400.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561695.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1032
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1032
                     /product="F-box DNA helicase 1 isoform X1"
                     /calculated_mol_wt=116918
     Region          216..263
                     /region_name="F-box_FBXO18"
                     /note="F-box domain found in F-box only protein 18
                     (FBXO18) and similar proteins; cd22095"
                     /db_xref="CDD:438867"
     Site            order(220,224,227..228,231..232,236,238..239,244..246,248)
                     /site_type="other"
                     /note="putative Skp1 binding site [polypeptide binding]"
                     /db_xref="CDD:438867"
     Region          453..946
                     /region_name="UvrD"
                     /note="Superfamily I DNA or RNA helicase [Replication,
                     recombination and repair]; COG0210"
                     /db_xref="CDD:439980"
     CDS             1..1032
                     /gene="FBH1"
                     /coded_by="XM_009563400.2:394..3492"
                     /db_xref="GeneID:104061454"
ORIGIN      
        1 milyccslma wfgdlffshv gkavkrfkkt hltatdceal aqspegsssl tqplsqrrsr
       61 gdvnrglhpt hwtrrhpggq gqqksitdyf risetrvgag gmknsgfkee lldlifaesd
      121 dsfstvmems gesrsfltge dllstpress rkrhlstasv hkqehdlwse pekktmlvhp
      181 ehiqikqeld dmdiepvpda hygllgtrnw evpqgsidel pievlrhifa flpvtdlyqn
      241 lslvcrcwre ivvdplfipw kklyhqylmk edaalhrveq vlqdfaitke qeacvlglir
      301 cvsaiptapk vdpsvvlrcl kshhlfpkae vcianklphl qsrmgpenmw aiiavmvlfs
      361 dgvrdirnlm vclqrpcsnl svvdvterly ciatllyamr drniaitnri hynifyclyl
      421 menasittqt veeetpasry rqdlwasscp evkltheqkr ilnhkiergq ivkimafagt
      481 gktstllkya ekfadmnfly vafnkavvek gksvfprnvm cktfhslafg svgkrykekg
      541 klnfskmsay sissliqnre gqslfirgkt vlqtlesffa ssdeeiceeh tpiwfknthg
      601 erklvsreek kiiveearei whnmkkldgd vekkykmtcd gylklwqlsk phlsgydaif
      661 vdeaqdctpa ivdivlsqtc giilvgdphq qiytfrgavn tlysvlhthv yyltqsfrfg
      721 peiayvgati ldvckrirnk tlvggnqkgd vrgtiggkit mlsrsnfnvf edavkltgre
      781 rpikihvigg larfglskiy diwklsqpad erkkanlvin dsfikkweet qgflglreya
      841 eriddkdlea kiaivekyke ripelvqkie rshvsqeava dyligtvhqa kglefdtvli
      901 gddfvnvpcl ggnqrrinfs vgmypedewn llyvavtrak khllmsksle hllalagecf
      961 lrvelmseaa kdgatvvcsv pqctgtaqsq lvvkklplth sngsrdvggy lchtctqkhf
     1021 gsltpltfip al
//
LOCUS       XP_053906020             957 aa            linear   VRT 09-MAR-2023
DEFINITION  F-box DNA helicase 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053906020
VERSION     XP_053906020.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050045.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..957
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..957
                     /product="F-box DNA helicase 1 isoform X2"
                     /calculated_mol_wt=108440
     Region          141..188
                     /region_name="F-box_FBXO18"
                     /note="F-box domain found in F-box only protein 18
                     (FBXO18) and similar proteins; cd22095"
                     /db_xref="CDD:438867"
     Site            order(145,149,152..153,156..157,161,163..164,169..171,173)
                     /site_type="other"
                     /note="putative Skp1 binding site [polypeptide binding]"
                     /db_xref="CDD:438867"
     Region          378..871
                     /region_name="UvrD"
                     /note="Superfamily I DNA or RNA helicase [Replication,
                     recombination and repair]; COG0210"
                     /db_xref="CDD:439980"
     CDS             1..957
                     /gene="FBH1"
                     /coded_by="XM_054050045.1:196..3069"
                     /db_xref="GeneID:104061454"
ORIGIN      
        1 mnagqgqqks itdyfriset rvgaggmkns gfkeelldli faesddsfst vmemsgesrs
       61 fltgedllst pressrkrhl stasvhkqeh dlwsepekkt mlvhpehiqi kqelddmdie
      121 pvpdahygll gtrnwevpqg sidelpievl rhifaflpvt dlyqnlslvc rcwreivvdp
      181 lfipwkklyh qylmkedaal hrveqvlqdf aitkeqeacv lglircvsai ptapkvdpsv
      241 vlrclkshhl fpkaevcian klphlqsrmg penmwaiiav mvlfsdgvrd irnlmvclqr
      301 pcsnlsvvdv terlyciatl lyamrdrnia itnrihynif yclylmenas ittqtveeet
      361 pasryrqdlw asscpevklt heqkrilnhk iergqivkim afagtgktst llkyaekfad
      421 mnflyvafnk avvekgksvf prnvmcktfh slafgsvgkr ykekgklnfs kmsaysissl
      481 iqnregqslf irgktvlqtl esffassdee iceehtpiwf knthgerklv sreekkiive
      541 eareiwhnmk kldgdvekky kmtcdgylkl wqlskphlsg ydaifvdeaq dctpaivdiv
      601 lsqtcgiilv gdphqqiytf rgavntlysv lhthvyyltq sfrfgpeiay vgatildvck
      661 rirnktlvgg nqkgdvrgti ggkitmlsrs nfnvfedavk ltgrerpiki hvigglarfg
      721 lskiydiwkl sqpaderkka nlvindsfik kweetqgflg lreyaeridd kdleakiaiv
      781 ekykeripel vqkiershvs qeavadylig tvhqakglef dtvligddfv nvpclggnqr
      841 rinfsvgmyp edewnllyva vtrakkhllm skslehllal agecflrvel mseaakdgat
      901 vvcsvpqctg taqsqlvvkk lplthsngsr dvggylchtc tqkhfgsltp ltfipal
//
LOCUS       XP_053906028             931 aa            linear   VRT 09-MAR-2023
DEFINITION  F-box DNA helicase 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053906028
VERSION     XP_053906028.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050053.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..931
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..931
                     /product="F-box DNA helicase 1 isoform X3"
                     /calculated_mol_wt=105686
     Region          115..162
                     /region_name="F-box_FBXO18"
                     /note="F-box domain found in F-box only protein 18
                     (FBXO18) and similar proteins; cd22095"
                     /db_xref="CDD:438867"
     Site            order(119,123,126..127,130..131,135,137..138,143..145,147)
                     /site_type="other"
                     /note="putative Skp1 binding site [polypeptide binding]"
                     /db_xref="CDD:438867"
     Region          352..845
                     /region_name="UvrD"
                     /note="Superfamily I DNA or RNA helicase [Replication,
                     recombination and repair]; COG0210"
                     /db_xref="CDD:439980"
     CDS             1..931
                     /gene="FBH1"
                     /coded_by="XM_054050053.1:2004..4799"
                     /db_xref="GeneID:104061454"
ORIGIN      
        1 mknsgfkeel ldlifaesdd sfstvmemsg esrsfltged llstpressr krhlstasvh
       61 kqehdlwsep ekktmlvhpe hiqikqeldd mdiepvpdah ygllgtrnwe vpqgsidelp
      121 ievlrhifaf lpvtdlyqnl slvcrcwrei vvdplfipwk klyhqylmke daalhrveqv
      181 lqdfaitkeq eacvlglirc vsaiptapkv dpsvvlrclk shhlfpkaev cianklphlq
      241 srmgpenmwa iiavmvlfsd gvrdirnlmv clqrpcsnls vvdvterlyc iatllyamrd
      301 rniaitnrih ynifyclylm enasittqtv eeetpasryr qdlwasscpe vkltheqkri
      361 lnhkiergqi vkimafagtg ktstllkyae kfadmnflyv afnkavvekg ksvfprnvmc
      421 ktfhslafgs vgkrykekgk lnfskmsays issliqnreg qslfirgktv lqtlesffas
      481 sdeeiceeht piwfknthge rklvsreekk iiveeareiw hnmkkldgdv ekkykmtcdg
      541 ylklwqlskp hlsgydaifv deaqdctpai vdivlsqtcg iilvgdphqq iytfrgavnt
      601 lysvlhthvy yltqsfrfgp eiayvgatil dvckrirnkt lvggnqkgdv rgtiggkitm
      661 lsrsnfnvfe davkltgrer pikihviggl arfglskiyd iwklsqpade rkkanlvind
      721 sfikkweetq gflglreyae riddkdleak iaivekyker ipelvqkier shvsqeavad
      781 yligtvhqak glefdtvlig ddfvnvpclg gnqrrinfsv gmypedewnl lyvavtrakk
      841 hllmsksleh llalagecfl rvelmseaak dgatvvcsvp qctgtaqsql vvkklplths
      901 ngsrdvggyl chtctqkhfg sltpltfipa l
//
LOCUS       XP_053906032             931 aa            linear   VRT 09-MAR-2023
DEFINITION  F-box DNA helicase 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053906032
VERSION     XP_053906032.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050057.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..931
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..931
                     /product="F-box DNA helicase 1 isoform X3"
                     /calculated_mol_wt=105686
     Region          115..162
                     /region_name="F-box_FBXO18"
                     /note="F-box domain found in F-box only protein 18
                     (FBXO18) and similar proteins; cd22095"
                     /db_xref="CDD:438867"
     Site            order(119,123,126..127,130..131,135,137..138,143..145,147)
                     /site_type="other"
                     /note="putative Skp1 binding site [polypeptide binding]"
                     /db_xref="CDD:438867"
     Region          352..845
                     /region_name="UvrD"
                     /note="Superfamily I DNA or RNA helicase [Replication,
                     recombination and repair]; COG0210"
                     /db_xref="CDD:439980"
     CDS             1..931
                     /gene="FBH1"
                     /coded_by="XM_054050057.1:763..3558"
                     /db_xref="GeneID:104061454"
ORIGIN      
        1 mknsgfkeel ldlifaesdd sfstvmemsg esrsfltged llstpressr krhlstasvh
       61 kqehdlwsep ekktmlvhpe hiqikqeldd mdiepvpdah ygllgtrnwe vpqgsidelp
      121 ievlrhifaf lpvtdlyqnl slvcrcwrei vvdplfipwk klyhqylmke daalhrveqv
      181 lqdfaitkeq eacvlglirc vsaiptapkv dpsvvlrclk shhlfpkaev cianklphlq
      241 srmgpenmwa iiavmvlfsd gvrdirnlmv clqrpcsnls vvdvterlyc iatllyamrd
      301 rniaitnrih ynifyclylm enasittqtv eeetpasryr qdlwasscpe vkltheqkri
      361 lnhkiergqi vkimafagtg ktstllkyae kfadmnflyv afnkavvekg ksvfprnvmc
      421 ktfhslafgs vgkrykekgk lnfskmsays issliqnreg qslfirgktv lqtlesffas
      481 sdeeiceeht piwfknthge rklvsreekk iiveeareiw hnmkkldgdv ekkykmtcdg
      541 ylklwqlskp hlsgydaifv deaqdctpai vdivlsqtcg iilvgdphqq iytfrgavnt
      601 lysvlhthvy yltqsfrfgp eiayvgatil dvckrirnkt lvggnqkgdv rgtiggkitm
      661 lsrsnfnvfe davkltgrer pikihviggl arfglskiyd iwklsqpade rkkanlvind
      721 sfikkweetq gflglreyae riddkdleak iaivekyker ipelvqkier shvsqeavad
      781 yligtvhqak glefdtvlig ddfvnvpclg gnqrrinfsv gmypedewnl lyvavtrakk
      841 hllmsksleh llalagecfl rvelmseaak dgatvvcsvp qctgtaqsql vvkklplths
      901 ngsrdvggyl chtctqkhfg sltpltfipa l
//
LOCUS       XP_053906045             871 aa            linear   VRT 09-MAR-2023
DEFINITION  coatomer subunit gamma-2 [Cuculus canorus].
ACCESSION   XP_053906045
VERSION     XP_053906045.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050070.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..871
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..871
                     /product="coatomer subunit gamma-2"
                     /calculated_mol_wt=97417
     Region          7..866
                     /region_name="SEC21"
                     /note="Vesicle coat complex COPI, gamma subunit
                     [Intracellular trafficking and secretion]; COG5240"
                     /db_xref="CDD:227565"
     Region          288..313
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          323..354
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          363..385
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          398..423
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          435..461
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          471..501
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          508..534
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     CDS             1..871
                     /gene="COPG2"
                     /coded_by="XM_054050070.1:69..2684"
                     /db_xref="GeneID:104061451"
ORIGIN      
        1 mikkfdkkde esgsgsnpfq hleksavlqe arifnetpin prrclhiltk ilyllnqgeh
       61 fgtteateaf famtrlfqsn dqtlrrmcyl tikemanise dviivtsslt kdmtgkedvy
      121 rgpairalcr itdgtmlqai erymkqaivd kvpsvsssal vssshmmkis ydvvkrwine
      181 aqeaassdni mvqyhalgll yhlrkndrla vskmlnkftk sglksqfayc mliriaskll
      241 keseeghesp lfdfiesclr nkhemviyea asaiihlpnc tarelapavs vlqlfcsspk
      301 pvlryaavrt lnkvamkhps avtacnldle nlitdsnrsi atlaittllk tgsessvdrl
      361 mkqissfvse isdefkvvvv qaisalcqky prkhsvmmtf lsnmlrddgg feykraivdc
      421 iisiieenpe skesglahlc efiedcehtv latkilhllg kegprtpsps kyirfifnrv
      481 vleneavraa avsalakfga qnenllpsil vllqrcmmds ddevrdratf ylnvlqqrqi
      541 alnaayifng ltvsvpgmek alhqytldps dkpfdmktvp latapifeqk aeialvtskp
      601 ekvapsrqdi fqeqlaaipe fkslgplfks sepvqlteae teyfvrcikh vftnhivfqf
      661 dctntlndql lervtvqmep sdaydvicci papnlaynqp gmcytlvqip qddptavact
      721 fsctmkftvr dcdpntgvpe ddgyddeyvl edlevtvsdh iqkvlkpnfa aaweevgdnf
      781 ekeetfalss iktldeavnn iikflgmqpc ersdkvpenk nshtlylagv yrgscdvlvr
      841 srlalgdgvt mqvtvrskee tpvdvilasv g
//
LOCUS       XP_053906054             871 aa            linear   VRT 09-MAR-2023
DEFINITION  coatomer subunit gamma-2 [Cuculus canorus].
ACCESSION   XP_053906054
VERSION     XP_053906054.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050079.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..871
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..871
                     /product="coatomer subunit gamma-2"
                     /calculated_mol_wt=97417
     Region          7..866
                     /region_name="SEC21"
                     /note="Vesicle coat complex COPI, gamma subunit
                     [Intracellular trafficking and secretion]; COG5240"
                     /db_xref="CDD:227565"
     Region          288..313
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          323..354
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          363..385
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          398..423
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          435..461
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          471..501
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          508..534
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     CDS             1..871
                     /gene="COPG2"
                     /coded_by="XM_054050079.1:69..2684"
                     /db_xref="GeneID:104061451"
ORIGIN      
        1 mikkfdkkde esgsgsnpfq hleksavlqe arifnetpin prrclhiltk ilyllnqgeh
       61 fgtteateaf famtrlfqsn dqtlrrmcyl tikemanise dviivtsslt kdmtgkedvy
      121 rgpairalcr itdgtmlqai erymkqaivd kvpsvsssal vssshmmkis ydvvkrwine
      181 aqeaassdni mvqyhalgll yhlrkndrla vskmlnkftk sglksqfayc mliriaskll
      241 keseeghesp lfdfiesclr nkhemviyea asaiihlpnc tarelapavs vlqlfcsspk
      301 pvlryaavrt lnkvamkhps avtacnldle nlitdsnrsi atlaittllk tgsessvdrl
      361 mkqissfvse isdefkvvvv qaisalcqky prkhsvmmtf lsnmlrddgg feykraivdc
      421 iisiieenpe skesglahlc efiedcehtv latkilhllg kegprtpsps kyirfifnrv
      481 vleneavraa avsalakfga qnenllpsil vllqrcmmds ddevrdratf ylnvlqqrqi
      541 alnaayifng ltvsvpgmek alhqytldps dkpfdmktvp latapifeqk aeialvtskp
      601 ekvapsrqdi fqeqlaaipe fkslgplfks sepvqlteae teyfvrcikh vftnhivfqf
      661 dctntlndql lervtvqmep sdaydvicci papnlaynqp gmcytlvqip qddptavact
      721 fsctmkftvr dcdpntgvpe ddgyddeyvl edlevtvsdh iqkvlkpnfa aaweevgdnf
      781 ekeetfalss iktldeavnn iikflgmqpc ersdkvpenk nshtlylagv yrgscdvlvr
      841 srlalgdgvt mqvtvrskee tpvdvilasv g
//
LOCUS       XP_053906066             404 aa            linear   VRT 09-MAR-2023
DEFINITION  mesoderm-specific transcript homolog protein isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053906066
VERSION     XP_053906066.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050091.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..404
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..404
                     /product="mesoderm-specific transcript homolog protein
                     isoform X1"
                     /calculated_mol_wt=45529
     Region          141..403
                     /region_name="MenH"
                     /note="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase MenH and related
                     esterases, alpha/beta hydrolase fold [Coenzyme transport
                     and metabolism, General function prediction only];
                     COG0596"
                     /db_xref="CDD:440361"
     CDS             1..404
                     /gene="MEST"
                     /coded_by="XM_054050091.1:37..1251"
                     /db_xref="GeneID:104061437"
ORIGIN      
        1 mrgtgpapcl ppvlasanhs aptprlrawe grrgeeerad cacarrgaal aglplaarrg
       61 fgqsqrssrc ratrrgrhrs rrregrgrsv raahvrgger rwprppslls vrararrkpv
      121 sqdegvvgad stgalgssdi vvllhgfpts sydwckiweg ltqrfhrvia ldfvgfgfsd
      181 kprphrysif eqasiveglv rhlglrrqri nllshdygdt vaqellhrye hnktgsilin
      241 slclsnggif pethyprfiq kilkdgglls piitrlmnff ffsrglravf gpytqpsqae
      301 ywdmwtavrt ndgnlvvdsi lqyinqrkkh rdrwvgalms tsvplhliyg pldpvnphpe
      361 flqlykkvlp mstvsvlddh ishypqledp tgflnaylnf insf
//
LOCUS       XP_053906075             370 aa            linear   VRT 09-MAR-2023
DEFINITION  mesoderm-specific transcript homolog protein isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053906075
VERSION     XP_053906075.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050100.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..370
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..370
                     /product="mesoderm-specific transcript homolog protein
                     isoform X2"
                     /calculated_mol_wt=41659
     Region          141..369
                     /region_name="MenH"
                     /note="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase MenH and related
                     esterases, alpha/beta hydrolase fold [Coenzyme transport
                     and metabolism, General function prediction only];
                     COG0596"
                     /db_xref="CDD:440361"
     CDS             1..370
                     /gene="MEST"
                     /coded_by="XM_054050100.1:37..1149"
                     /db_xref="GeneID:104061437"
ORIGIN      
        1 mrgtgpapcl ppvlasanhs aptprlrawe grrgeeerad cacarrgaal aglplaarrg
       61 fgqsqrssrc ratrrgrhrs rrregrgrsv raahvrgger rwprppslls vrararrkpv
      121 sqdegvvgad stgalgssdi vvllhgfpts sydwckiweg ltqrfhrvia ldfvgfgfsd
      181 kprphrysif eqasiveglv rhlglrrqri nllshdygdt vaqellhrye hnktgsilin
      241 slclsnggif pethyprfiq kilkdgglls piitrlmnff ffsrgilqyi nqrkkhrdrw
      301 vgalmstsvp lhliygpldp vnphpeflql ykkvlpmstv svlddhishy pqledptgfl
      361 naylnfinsf
//
LOCUS       XP_053906081             355 aa            linear   VRT 09-MAR-2023
DEFINITION  mesoderm-specific transcript homolog protein isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053906081
VERSION     XP_053906081.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050106.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..355
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..355
                     /product="mesoderm-specific transcript homolog protein
                     isoform X3"
                     /calculated_mol_wt=39222
     Region          92..354
                     /region_name="MenH"
                     /note="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase MenH and related
                     esterases, alpha/beta hydrolase fold [Coenzyme transport
                     and metabolism, General function prediction only];
                     COG0596"
                     /db_xref="CDD:440361"
     CDS             1..355
                     /gene="MEST"
                     /coded_by="XM_054050106.1:40..1107"
                     /db_xref="GeneID:104061437"
ORIGIN      
        1 mrkagsgagw tpigrpsrlr pitalqplpg nakgtpplqa pggagperpg cacagrgaal
       61 appsisaqca rasaaearep dstgalgssd ivvllhgfpt ssydwckiwe gltqrfhrvi
      121 aldfvgfgfs dkprphrysi feqasivegl vrhlglrrqr inllshdygd tvaqellhry
      181 ehnktgsili nslclsnggi fpethyprfi qkilkdggll spiitrlmnf fffsrglrav
      241 fgpytqpsqa eywdmwtavr tndgnlvvds ilqyinqrkk hrdrwvgalm stsvplhliy
      301 gpldpvnphp eflqlykkvl pmstvsvldd hishypqled ptgflnayln finsf
//
LOCUS       XP_053906090             352 aa            linear   VRT 09-MAR-2023
DEFINITION  mesoderm-specific transcript homolog protein isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053906090
VERSION     XP_053906090.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050115.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..352
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..352
                     /product="mesoderm-specific transcript homolog protein
                     isoform X4"
                     /calculated_mol_wt=38903
     Region          141..346
                     /region_name="Abhydrolase_6"
                     /note="Alpha/beta hydrolase family; pfam12697"
                     /db_xref="CDD:463673"
     Region          141..>229
                     /region_name="MenH"
                     /note="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase MenH and related
                     esterases, alpha/beta hydrolase fold [Coenzyme transport
                     and metabolism, General function prediction only];
                     COG0596"
                     /db_xref="CDD:440361"
     CDS             1..352
                     /gene="MEST"
                     /coded_by="XM_054050115.1:37..1095"
                     /db_xref="GeneID:104061437"
ORIGIN      
        1 mrgtgpapcl ppvlasanhs aptprlrawe grrgeeerad cacarrgaal aglplaarrg
       61 fgqsqrssrc ratrrgrhrs rrregrgrsv raahvrgger rwprppslls vrararrkpv
      121 sqdegvvgad stgalgssdi vvllhgfpts sydwckiweg ltqrfhrvia ldfvgfgfsd
      181 kprphrysif eqasiveglv rhlglrrqri nllshdygdt vaqellhrye hnktgsilin
      241 slclsnggif pethyprfiq kilkdgglls piitrlmnff ffsrglravf gpytqpsqae
      301 ywdmwtavrt ndgnlvvdsa phlwapgpce saprvsaalq egashvhgvc ag
//
LOCUS       XP_053906100             326 aa            linear   VRT 09-MAR-2023
DEFINITION  mesoderm-specific transcript homolog protein isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053906100
VERSION     XP_053906100.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050125.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..326
                     /product="mesoderm-specific transcript homolog protein
                     isoform X5"
                     /calculated_mol_wt=37352
     Region          36..325
                     /region_name="MenH"
                     /note="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase MenH and related
                     esterases, alpha/beta hydrolase fold [Coenzyme transport
                     and metabolism, General function prediction only];
                     COG0596"
                     /db_xref="CDD:440361"
     CDS             1..326
                     /gene="MEST"
                     /coded_by="XM_054050125.1:125..1105"
                     /db_xref="GeneID:104061437"
ORIGIN      
        1 mkewwvqvgl lsvpllavyl hipppklspa llswrssggy ftyknqnify rdstgalgss
       61 divvllhgfp tssydwckiw egltqrfhrv ialdfvgfgf sdkprphrys ifeqasiveg
      121 lvrhlglrrq rinllshdyg dtvaqellhr yehnktgsil inslclsngg ifpethyprf
      181 iqkilkdggl lspiitrlmn ffffsrglra vfgpytqpsq aeywdmwtav rtndgnlvvd
      241 silqyinqrk khrdrwvgal mstsvplhli ygpldpvnph peflqlykkv lpmstvsvld
      301 dhishypqle dptgflnayl nfinsf
//
LOCUS       XP_053906110             292 aa            linear   VRT 09-MAR-2023
DEFINITION  mesoderm-specific transcript homolog protein isoform X6 [Cuculus
            canorus].
ACCESSION   XP_053906110
VERSION     XP_053906110.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050135.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..292
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..292
                     /product="mesoderm-specific transcript homolog protein
                     isoform X6"
                     /calculated_mol_wt=33482
     Region          36..291
                     /region_name="MenH"
                     /note="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase MenH and related
                     esterases, alpha/beta hydrolase fold [Coenzyme transport
                     and metabolism, General function prediction only];
                     COG0596"
                     /db_xref="CDD:440361"
     CDS             1..292
                     /gene="MEST"
                     /coded_by="XM_054050135.1:125..1003"
                     /db_xref="GeneID:104061437"
ORIGIN      
        1 mkewwvqvgl lsvpllavyl hipppklspa llswrssggy ftyknqnify rdstgalgss
       61 divvllhgfp tssydwckiw egltqrfhrv ialdfvgfgf sdkprphrys ifeqasiveg
      121 lvrhlglrrq rinllshdyg dtvaqellhr yehnktgsil inslclsngg ifpethyprf
      181 iqkilkdggl lspiitrlmn ffffsrgilq yinqrkkhrd rwvgalmsts vplhliygpl
      241 dpvnphpefl qlykkvlpms tvsvlddhis hypqledptg flnaylnfin sf
//
LOCUS       XP_053906121             257 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-15 receptor subunit alpha [Cuculus canorus].
ACCESSION   XP_053906121
VERSION     XP_053906121.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050146.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..257
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..257
                     /product="interleukin-15 receptor subunit alpha"
                     /calculated_mol_wt=26721
     Region          29..91
                     /region_name="CCP"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     cd00033"
                     /db_xref="CDD:153056"
     Site            order(39,57)
                     /site_type="active"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     Region          <93..196
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..257
                     /gene="IL15RA"
                     /coded_by="XM_054050146.1:256..1029"
                     /db_xref="GeneID:104061452"
ORIGIN      
        1 marpllplll lcaalalllp gvaadtarcs hpkavanahi dvgnntllnt rlrytcnpgy
       61 krkagtssli qcivhhgstk pqwtdttlqc irdpalhplt pnpefpkaph ttrmmqrgtt
      121 daslsatpsp apmpklpeta srspltpaan gsspetstpl eiappletst vgegmapgis
      181 lgttplpsdp mdhaavsiqt massigllgv vvagivvccc wrmkmrarqd savtaipmva
      241 sateneamlp ssnfpvg
//
LOCUS       XP_009555890             522 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptotagmin-10 [Cuculus canorus].
ACCESSION   XP_009555890
VERSION     XP_009555890.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557595.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555890.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..522
                     /product="synaptotagmin-10"
                     /calculated_mol_wt=58571
     Region          230..355
                     /region_name="C2A_Synaptotagmin-1-5-6-9-10"
                     /note="C2A domain first repeat present in Synaptotagmins
                     1, 5, 6, 9, and 10; cd08385"
                     /db_xref="CDD:176031"
     Site            order(261,267,319,321,327)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176031"
     Region          364..497
                     /region_name="C2B_Synaptotagmin-3-5-6-9-10"
                     /note="C2 domain second repeat present in Synaptotagmins
                     3, 5, 6, 9, and 10; cd08403"
                     /db_xref="CDD:176048"
     Site            order(393,399,423,453,455,461)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176048"
     CDS             1..522
                     /gene="SYT10"
                     /coded_by="XM_009557595.2:132..1700"
                     /db_xref="GeneID:104056344"
ORIGIN      
        1 msfpvedsvg slchkalqii selclggqve rekcagifpl etarqgiggt disvsllavv
       61 vsfcglallv vslfvfwklc wpcwrskplt snasnvpqsn ssaptevfet sekkevkeng
      121 kpttkvleaa lkishtspdi paevqnalke hlikharmqr qiteptsssr hnsfrrhlpr
      181 qmqvssvdfn mgtdpilqrg etttsigrik pelykqksvd sdgqqedvkt cgklnftlry
      241 dyenellavt ivkaldlpak dftgtsdpyv kiyllpdrkk kfqtrvhrkt lnpvfdetfq
      301 fpvaydqlsn rklhfsvydf drfsrhdmig evildnffev sdlsreanvw kdihcattes
      361 idlgeimfsl cylptagrmt ltvikcrnlk amditgasdp yvkvslmceg rrlkkrkttt
      421 kkntlnpvyn eaiifdippe nvdqvslsia vmdydrvghn evigvcrtgi daeglgrdhw
      481 nemlayprkp ithwhplvel pgratsfdsq gscsspkppl tp
//
LOCUS       XP_053906149             644 aa            linear   VRT 09-MAR-2023
DEFINITION  peroxisomal biogenesis factor 5 isoform X1 [Cuculus canorus].
ACCESSION   XP_053906149
VERSION     XP_053906149.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050174.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..644
                     /product="peroxisomal biogenesis factor 5 isoform X1"
                     /calculated_mol_wt=71962
     Region          308..407
                     /region_name="NrfG"
                     /note="Cytochrome c-type biogenesis protein CcmH/NrfG
                     [Energy production and conversion, Posttranslational
                     modification, protein turnover, chaperones]; COG4235"
                     /db_xref="CDD:443378"
     Site            order(344..345,348..349,351,375,378..379,382..383,
                     385..386,409,412..413,416..417,420)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          344..368
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          373..403
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          374..>591
                     /region_name="Spy"
                     /note="Predicted O-linked N-acetylglucosamine transferase,
                     SPINDLY family [Posttranslational modification, protein
                     turnover, chaperones]; COG3914"
                     /db_xref="CDD:443119"
     Region          408..436
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          493..521
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(494,497..498,501..502,504,528,531..532,535..536,
                     538..539,562,565..566,569..570,573)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          526..556
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          561..588
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..644
                     /gene="PEX5"
                     /coded_by="XM_054050174.1:175..2109"
                     /db_xref="GeneID:104064353"
ORIGIN      
        1 mamrelvepe cggsnplmkl aghftqdkal rqeglqgpla wpsgapeaaa vskplgvase
       61 delvgeflqe qnapllsrap qtfkmddlla emqeieqssf rqapqrapgv aalalsenwt
      121 qeflatadsa gdvssdynea dwsqefiaev tdplsvspak waeeyleqse eklwlgesed
      181 qsladkwyed yqpeddlkkt vndflskvdd pklknseflk fvrqigdgrv sieanqvthr
      241 dqdqaeqwaa efiqqqgasd awvdqfarsg nmstldtefe qaktavesdv dfwdklqaew
      301 eemakrdaea hpwlsdyedl ssssydkgyq feednpmrdh pdafeegrrr laegdlpnav
      361 llfeaavqqk pdhmeawqyl gttqaeneqe llaisalrrc lelqpgnlta lmalavsftn
      421 eslqkqacet lwdwlrhksd yahllkkepe eregtnlgps krvlgsllsd slfmevkelf
      481 laavrsnplt vdpdvqcglg vlfnlsgeye kavdcfsaal svrpndhllw nklgatlang
      541 nrseeavaay rralelqpgy irsrynlgis cinlgahrea vehflealhm qqksrgprgq
      601 qgamsdniwt tlrmalsmlg qsdlygaada hdlptllqaf glqq
//
LOCUS       XP_053906159             644 aa            linear   VRT 09-MAR-2023
DEFINITION  peroxisomal biogenesis factor 5 isoform X1 [Cuculus canorus].
ACCESSION   XP_053906159
VERSION     XP_053906159.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050184.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..644
                     /product="peroxisomal biogenesis factor 5 isoform X1"
                     /calculated_mol_wt=71962
     Region          308..407
                     /region_name="NrfG"
                     /note="Cytochrome c-type biogenesis protein CcmH/NrfG
                     [Energy production and conversion, Posttranslational
                     modification, protein turnover, chaperones]; COG4235"
                     /db_xref="CDD:443378"
     Site            order(344..345,348..349,351,375,378..379,382..383,
                     385..386,409,412..413,416..417,420)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          344..368
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          373..403
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          374..>591
                     /region_name="Spy"
                     /note="Predicted O-linked N-acetylglucosamine transferase,
                     SPINDLY family [Posttranslational modification, protein
                     turnover, chaperones]; COG3914"
                     /db_xref="CDD:443119"
     Region          408..436
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          493..521
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(494,497..498,501..502,504,528,531..532,535..536,
                     538..539,562,565..566,569..570,573)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          526..556
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          561..588
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..644
                     /gene="PEX5"
                     /coded_by="XM_054050184.1:165..2099"
                     /db_xref="GeneID:104064353"
ORIGIN      
        1 mamrelvepe cggsnplmkl aghftqdkal rqeglqgpla wpsgapeaaa vskplgvase
       61 delvgeflqe qnapllsrap qtfkmddlla emqeieqssf rqapqrapgv aalalsenwt
      121 qeflatadsa gdvssdynea dwsqefiaev tdplsvspak waeeyleqse eklwlgesed
      181 qsladkwyed yqpeddlkkt vndflskvdd pklknseflk fvrqigdgrv sieanqvthr
      241 dqdqaeqwaa efiqqqgasd awvdqfarsg nmstldtefe qaktavesdv dfwdklqaew
      301 eemakrdaea hpwlsdyedl ssssydkgyq feednpmrdh pdafeegrrr laegdlpnav
      361 llfeaavqqk pdhmeawqyl gttqaeneqe llaisalrrc lelqpgnlta lmalavsftn
      421 eslqkqacet lwdwlrhksd yahllkkepe eregtnlgps krvlgsllsd slfmevkelf
      481 laavrsnplt vdpdvqcglg vlfnlsgeye kavdcfsaal svrpndhllw nklgatlang
      541 nrseeavaay rralelqpgy irsrynlgis cinlgahrea vehflealhm qqksrgprgq
      601 qgamsdniwt tlrmalsmlg qsdlygaada hdlptllqaf glqq
//
LOCUS       XP_053906164             644 aa            linear   VRT 09-MAR-2023
DEFINITION  peroxisomal biogenesis factor 5 isoform X1 [Cuculus canorus].
ACCESSION   XP_053906164
VERSION     XP_053906164.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050189.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..644
                     /product="peroxisomal biogenesis factor 5 isoform X1"
                     /calculated_mol_wt=71962
     Region          308..407
                     /region_name="NrfG"
                     /note="Cytochrome c-type biogenesis protein CcmH/NrfG
                     [Energy production and conversion, Posttranslational
                     modification, protein turnover, chaperones]; COG4235"
                     /db_xref="CDD:443378"
     Site            order(344..345,348..349,351,375,378..379,382..383,
                     385..386,409,412..413,416..417,420)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          344..368
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          373..403
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          374..>591
                     /region_name="Spy"
                     /note="Predicted O-linked N-acetylglucosamine transferase,
                     SPINDLY family [Posttranslational modification, protein
                     turnover, chaperones]; COG3914"
                     /db_xref="CDD:443119"
     Region          408..436
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          493..521
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(494,497..498,501..502,504,528,531..532,535..536,
                     538..539,562,565..566,569..570,573)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          526..556
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          561..588
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..644
                     /gene="PEX5"
                     /coded_by="XM_054050189.1:146..2080"
                     /db_xref="GeneID:104064353"
ORIGIN      
        1 mamrelvepe cggsnplmkl aghftqdkal rqeglqgpla wpsgapeaaa vskplgvase
       61 delvgeflqe qnapllsrap qtfkmddlla emqeieqssf rqapqrapgv aalalsenwt
      121 qeflatadsa gdvssdynea dwsqefiaev tdplsvspak waeeyleqse eklwlgesed
      181 qsladkwyed yqpeddlkkt vndflskvdd pklknseflk fvrqigdgrv sieanqvthr
      241 dqdqaeqwaa efiqqqgasd awvdqfarsg nmstldtefe qaktavesdv dfwdklqaew
      301 eemakrdaea hpwlsdyedl ssssydkgyq feednpmrdh pdafeegrrr laegdlpnav
      361 llfeaavqqk pdhmeawqyl gttqaeneqe llaisalrrc lelqpgnlta lmalavsftn
      421 eslqkqacet lwdwlrhksd yahllkkepe eregtnlgps krvlgsllsd slfmevkelf
      481 laavrsnplt vdpdvqcglg vlfnlsgeye kavdcfsaal svrpndhllw nklgatlang
      541 nrseeavaay rralelqpgy irsrynlgis cinlgahrea vehflealhm qqksrgprgq
      601 qgamsdniwt tlrmalsmlg qsdlygaada hdlptllqaf glqq
//
LOCUS       XP_009564976             605 aa            linear   VRT 09-MAR-2023
DEFINITION  peroxisomal biogenesis factor 5 isoform X2 [Cuculus canorus].
ACCESSION   XP_009564976
VERSION     XP_009564976.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566681.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564976.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..605
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..605
                     /product="peroxisomal biogenesis factor 5 isoform X2"
                     /calculated_mol_wt=67392
     Region          269..368
                     /region_name="NrfG"
                     /note="Cytochrome c-type biogenesis protein CcmH/NrfG
                     [Energy production and conversion, Posttranslational
                     modification, protein turnover, chaperones]; COG4235"
                     /db_xref="CDD:443378"
     Site            order(305..306,309..310,312,336,339..340,343..344,
                     346..347,370,373..374,377..378,381)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          305..329
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          334..364
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          335..>552
                     /region_name="Spy"
                     /note="Predicted O-linked N-acetylglucosamine transferase,
                     SPINDLY family [Posttranslational modification, protein
                     turnover, chaperones]; COG3914"
                     /db_xref="CDD:443119"
     Region          369..397
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          454..482
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(455,458..459,462..463,465,489,492..493,496..497,
                     499..500,523,526..527,530..531,534)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          487..517
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          522..549
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..605
                     /gene="PEX5"
                     /coded_by="XM_009566681.2:250..2067"
                     /db_xref="GeneID:104064353"
ORIGIN      
        1 mamrelvepe cggsnplmkl aghftqdkal rqeglqgpla wpsgapeaaa vskplgvase
       61 delvgeflqe qnapllsrap qtfkmddlla emqeieqssf rqapqrapgv aalalsenwt
      121 qeflatadsa gdvssdynea dwsqefiaev tdplsvspak waeeyleqse eklwlgesed
      181 qsladkwyed yqpeddlkkt vndflskvdd pklknsegas dawvdqfars gnmstldtef
      241 eqaktavesd vdfwdklqae weemakrdae ahpwlsdyed lssssydkgy qfeednpmrd
      301 hpdafeegrr rlaegdlpna vllfeaavqq kpdhmeawqy lgttqaeneq ellaisalrr
      361 clelqpgnlt almalavsft neslqkqace tlwdwlrhks dyahllkkep eeregtnlgp
      421 skrvlgslls dslfmevkel flaavrsnpl tvdpdvqcgl gvlfnlsgey ekavdcfsaa
      481 lsvrpndhll wnklgatlan gnrseeavaa yrralelqpg yirsrynlgi scinlgahre
      541 avehflealh mqqksrgprg qqgamsdniw ttlrmalsml gqsdlygaad ahdlptllqa
      601 fglqq
//
LOCUS       XP_053906196             422 aa            linear   VRT 09-MAR-2023
DEFINITION  cAMP-dependent protein kinase type II-beta regulatory subunit
            [Cuculus canorus].
ACCESSION   XP_053906196
VERSION     XP_053906196.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050221.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..422
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..422
                     /product="cAMP-dependent protein kinase type II-beta
                     regulatory subunit"
                     /calculated_mol_wt=46752
     Region          3..39
                     /region_name="DD_R_PKA_DPY30-like"
                     /note="dimerization/docking (D/D) domains found in the
                     cAMP-dependent protein kinase regulatory subunit (PRKAR)
                     and the DPY30/SDC1-like family; cl02594"
                     /db_xref="CDD:445844"
     Region          158..271
                     /region_name="CAP_ED"
                     /note="effector domain of the CAP family of transcription
                     factors; members include CAP (or cAMP receptor protein
                     (CRP)), which binds cAMP, FNR (fumarate and nitrate
                     reduction), which uses an iron-sulfur cluster to sense
                     oxygen) and CooA, a heme containing CO...; cd00038"
                     /db_xref="CDD:237999"
     Site            order(226..227,236..238)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:237999"
     Site            order(258..260,264..266)
                     /site_type="other"
                     /note="flexible hinge region"
                     /db_xref="CDD:237999"
     Region          280..400
                     /region_name="CAP_ED"
                     /note="effector domain of the CAP family of transcription
                     factors; members include CAP (or cAMP receptor protein
                     (CRP)), which binds cAMP, FNR (fumarate and nitrate
                     reduction), which uses an iron-sulfur cluster to sense
                     oxygen) and CooA, a heme containing CO...; cd00038"
                     /db_xref="CDD:237999"
     Site            order(355..356,365..367)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:237999"
     Site            order(387..389,393..395)
                     /site_type="other"
                     /note="flexible hinge region"
                     /db_xref="CDD:237999"
     CDS             1..422
                     /gene="PRKAR2B"
                     /coded_by="XM_054050221.1:212..1480"
                     /db_xref="GeneID:104056092"
ORIGIN      
        1 msisipaglt ellqgftvev lrsqpadlle falqyfgrlk eeeaaaapae keasggrrag
       61 sghgrgsqqp rraahgvnfa eepmqtdses gedeqqpqqp qqqqfpapvi nrftrrasvc
      121 aetynpdeee ddtesriihp ktddqrnrlq eackdillfk nldpeqmsqv ldamfeklve
      181 ggehvidqgd dgdnfyvidr gtydiyvkcd gvgrcvgtyd nrgsfgelal myntpraati
      241 iatspgaiwg ldrvtfrrii vknnakkrrm yesfieslpf lkslevserl kvvdvigtkv
      301 ykdgeqiiaq gdsadsffiv esgevriimt rkgkqdveen gaveiarcsr gqyfgelalv
      361 tnkpraasaf algtvkclvm dvqaferllg pcmeilkrni anyeeqlval fgtnmdiadp
      421 sa
//
LOCUS       XP_053906211             191 aa            linear   VRT 09-MAR-2023
DEFINITION  C-type Lectin CRL-like [Cuculus canorus].
ACCESSION   XP_053906211
VERSION     XP_053906211.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050236.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..191
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..191
                     /product="C-type Lectin CRL-like"
                     /calculated_mol_wt=21809
     Region          61..189
                     /region_name="CLECT"
                     /note="C-type lectin (CTL)/C-type lectin-like (CTLD)
                     domain; cl02432"
                     /db_xref="CDD:470576"
     Site            order(160,164,166,173,175..178,181..183)
                     /site_type="other"
                     /note="ligand binding surface [chemical binding]"
                     /db_xref="CDD:153057"
     CDS             1..191
                     /gene="LOC128849253"
                     /coded_by="XM_054050236.1:158..733"
                     /db_xref="GeneID:128849253"
ORIGIN      
        1 mgagptrqrl lgcllllafl gvdslpadri leeragtsil aaapdvqpyv lqeppvrahi
       61 cphnwihfrg hcygyftqrk tqaeaqeecs rygptgtlas ihtegssvvl geyvasqqdr
      121 dnvwiglkde ehtgtwrwsd ssvldylhwd wgqpvqwrnw ycvvlgqnsa fqywrnyscq
      181 eqfpflcqyq v
//
LOCUS       XP_053906223             113 aa            linear   VRT 09-MAR-2023
DEFINITION  spexin [Cuculus canorus].
ACCESSION   XP_053906223
VERSION     XP_053906223.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050248.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..113
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..113
                     /product="spexin"
                     /calculated_mol_wt=12769
     Region          27..113
                     /region_name="Spexin"
                     /note="Neuropeptide secretory protein family, NPQ, spexin;
                     pfam15171"
                     /db_xref="CDD:464543"
     CDS             1..113
                     /gene="SPX"
                     /coded_by="XM_054050248.1:132..473"
                     /db_xref="GeneID:128849254"
ORIGIN      
        1 mkgqrkltas amalflavsf lsfswsapqs hfqrrnwtpq amlylkgaqg rrfisdesqr
       61 kdlfnrmqle trsqntdpls lseaaalfls slqkqveeen sdhpgylten vsn
//
LOCUS       XP_053906236             520 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP-ribosylation factor GTPase-activating protein 3 [Cuculus
            canorus].
ACCESSION   XP_053906236
VERSION     XP_053906236.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050261.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..520
                     /product="ADP-ribosylation factor GTPase-activating
                     protein 3"
                     /calculated_mol_wt=57450
     Region          1..468
                     /region_name="PLN03114"
                     /note="ADP-ribosylation factor GTPase-activating protein
                     AGD10; Provisional"
                     /db_xref="CDD:178661"
     Region          6..123
                     /region_name="ArfGap_ArfGap3"
                     /note="Arf1 GTPase-activating protein 3; cd09028"
                     /db_xref="CDD:350085"
     Site            order(25,28,45,48,53)
                     /site_type="other"
                     /note="arginine finger"
                     /db_xref="CDD:350085"
     Site            order(25,28,45,48)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:350085"
     CDS             1..520
                     /gene="ARFGAP3"
                     /coded_by="XM_054050261.1:96..1658"
                     /db_xref="GeneID:104067249"
ORIGIN      
        1 mgdsgkqdia aifkrlrsvp tnkvcfdcga knpswasity gvflcidcsg thrslgvhls
       61 firsteldsn wswfqlrcmq vggnanasaf fhqhgcttnd tnakynsraa qlykekiksl
      121 atqatrkhgt dlwidgcgmp pispqnkeed ffashvspka kntewvlsep epvslqqkts
      181 enipeccegp ehgpsvdcls tspnavlent afikkkpnqa kkgiklgakk gglgaqkvss
      241 qsfneiekqa qavdkmkeqe dlhsgrktek eeplvsslrl ayrdldiktk eeklnlsgkk
      301 knelerlgmg fgsnrsgish svtsdmqtie qetpaiaktk kkytdeveds yfssssryyd
      361 csdlrsgtfs kwddstdsfw kkennskdvd vmltskstgf sdrptsrrkp ecelslntde
      421 aqkkfgnvka issdmyfgrq dhddyearar lerlsgsssi ssadlfedqk kqpagsynit
      481 nvlpsapdia qfkqgvksva gklsvlangv mtsiqdrygs
//
LOCUS       XP_053906250             631 aa            linear   VRT 09-MAR-2023
DEFINITION  spartin isoform X1 [Cuculus canorus].
ACCESSION   XP_053906250
VERSION     XP_053906250.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050275.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..631
                     /product="spartin isoform X1"
                     /calculated_mol_wt=67956
     Region          18..97
                     /region_name="MIT_spastin"
                     /note="MIT: domain contained within Microtubule
                     Interacting and Trafficking molecules. This MIT domain
                     sub-family is found in the AAA protein spastin, a probable
                     ATPase involved in the assembly or function of nuclear
                     protein complexes; spastins might also be...; cd02679"
                     /db_xref="CDD:239142"
     Region          <102..185
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          418..610
                     /region_name="Senescence"
                     /note="Senescence domain; pfam06911"
                     /db_xref="CDD:462037"
     CDS             1..631
                     /gene="SPART"
                     /coded_by="XM_054050275.1:107..2002"
                     /db_xref="GeneID:104066121"
ORIGIN      
        1 mehlqdpvvq edanikaine eyrkaficin kglntdeygq keearsyykq gldhllrgis
       61 ipsqgpacvg sqwesarrmq qkmretlqnv harlgileqn npplqaspaa mdapagvskl
      121 ypsipskikp erppppnsvf apsqppaadg svatvsqgqt pamspssakp lclpneappa
      181 ytpqatnghf tvsygtdsge fssvgedyys kcnrpppien lgvdadelil ipqgvqiffv
      241 tpdgqvsaps ypgylrivkf ldtdsaavqs rppaflqvcd wlyplmcnqs pvlccntgvy
      301 mfpdtmsqip gsyvgvvlss elpaadrelf edllkqmsdl riqvpgsher vglsselpas
      361 erahfedkfk qmsghkvqps easgdtvnlp qtvhippqpe gaeeqkelpe wsekvahgil
      421 sgaswvswgl vkgaeytgka ihkgasklre hiqpeekple vsptvakglh vakqatggav
      481 kvsqflvegv csiascvgke laphvkkhgs klvpeslkkd kdgkstfdga lvvaasgvqg
      541 fstvwqgles aakciaksvs tetvktvkyk ygedaghatd namnsainlg vtafnidnig
      601 ikavvkrtak etghavldey kvldnekkdk k
//
LOCUS       XP_053906259             631 aa            linear   VRT 09-MAR-2023
DEFINITION  spartin isoform X1 [Cuculus canorus].
ACCESSION   XP_053906259
VERSION     XP_053906259.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050284.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..631
                     /product="spartin isoform X1"
                     /calculated_mol_wt=67956
     Region          18..97
                     /region_name="MIT_spastin"
                     /note="MIT: domain contained within Microtubule
                     Interacting and Trafficking molecules. This MIT domain
                     sub-family is found in the AAA protein spastin, a probable
                     ATPase involved in the assembly or function of nuclear
                     protein complexes; spastins might also be...; cd02679"
                     /db_xref="CDD:239142"
     Region          <102..185
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          418..610
                     /region_name="Senescence"
                     /note="Senescence domain; pfam06911"
                     /db_xref="CDD:462037"
     CDS             1..631
                     /gene="SPART"
                     /coded_by="XM_054050284.1:79..1974"
                     /db_xref="GeneID:104066121"
ORIGIN      
        1 mehlqdpvvq edanikaine eyrkaficin kglntdeygq keearsyykq gldhllrgis
       61 ipsqgpacvg sqwesarrmq qkmretlqnv harlgileqn npplqaspaa mdapagvskl
      121 ypsipskikp erppppnsvf apsqppaadg svatvsqgqt pamspssakp lclpneappa
      181 ytpqatnghf tvsygtdsge fssvgedyys kcnrpppien lgvdadelil ipqgvqiffv
      241 tpdgqvsaps ypgylrivkf ldtdsaavqs rppaflqvcd wlyplmcnqs pvlccntgvy
      301 mfpdtmsqip gsyvgvvlss elpaadrelf edllkqmsdl riqvpgsher vglsselpas
      361 erahfedkfk qmsghkvqps easgdtvnlp qtvhippqpe gaeeqkelpe wsekvahgil
      421 sgaswvswgl vkgaeytgka ihkgasklre hiqpeekple vsptvakglh vakqatggav
      481 kvsqflvegv csiascvgke laphvkkhgs klvpeslkkd kdgkstfdga lvvaasgvqg
      541 fstvwqgles aakciaksvs tetvktvkyk ygedaghatd namnsainlg vtafnidnig
      601 ikavvkrtak etghavldey kvldnekkdk k
//
LOCUS       XP_053906270             631 aa            linear   VRT 09-MAR-2023
DEFINITION  spartin isoform X1 [Cuculus canorus].
ACCESSION   XP_053906270
VERSION     XP_053906270.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050295.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..631
                     /product="spartin isoform X1"
                     /calculated_mol_wt=67956
     Region          18..97
                     /region_name="MIT_spastin"
                     /note="MIT: domain contained within Microtubule
                     Interacting and Trafficking molecules. This MIT domain
                     sub-family is found in the AAA protein spastin, a probable
                     ATPase involved in the assembly or function of nuclear
                     protein complexes; spastins might also be...; cd02679"
                     /db_xref="CDD:239142"
     Region          <102..185
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          418..610
                     /region_name="Senescence"
                     /note="Senescence domain; pfam06911"
                     /db_xref="CDD:462037"
     CDS             1..631
                     /gene="SPART"
                     /coded_by="XM_054050295.1:73..1968"
                     /db_xref="GeneID:104066121"
ORIGIN      
        1 mehlqdpvvq edanikaine eyrkaficin kglntdeygq keearsyykq gldhllrgis
       61 ipsqgpacvg sqwesarrmq qkmretlqnv harlgileqn npplqaspaa mdapagvskl
      121 ypsipskikp erppppnsvf apsqppaadg svatvsqgqt pamspssakp lclpneappa
      181 ytpqatnghf tvsygtdsge fssvgedyys kcnrpppien lgvdadelil ipqgvqiffv
      241 tpdgqvsaps ypgylrivkf ldtdsaavqs rppaflqvcd wlyplmcnqs pvlccntgvy
      301 mfpdtmsqip gsyvgvvlss elpaadrelf edllkqmsdl riqvpgsher vglsselpas
      361 erahfedkfk qmsghkvqps easgdtvnlp qtvhippqpe gaeeqkelpe wsekvahgil
      421 sgaswvswgl vkgaeytgka ihkgasklre hiqpeekple vsptvakglh vakqatggav
      481 kvsqflvegv csiascvgke laphvkkhgs klvpeslkkd kdgkstfdga lvvaasgvqg
      541 fstvwqgles aakciaksvs tetvktvkyk ygedaghatd namnsainlg vtafnidnig
      601 ikavvkrtak etghavldey kvldnekkdk k
//
LOCUS       XP_053906278             596 aa            linear   VRT 09-MAR-2023
DEFINITION  spartin isoform X2 [Cuculus canorus].
ACCESSION   XP_053906278
VERSION     XP_053906278.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050303.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..596
                     /product="spartin isoform X2"
                     /calculated_mol_wt=64068
     Region          18..97
                     /region_name="MIT_spastin"
                     /note="MIT: domain contained within Microtubule
                     Interacting and Trafficking molecules. This MIT domain
                     sub-family is found in the AAA protein spastin, a probable
                     ATPase involved in the assembly or function of nuclear
                     protein complexes; spastins might also be...; cd02679"
                     /db_xref="CDD:239142"
     Region          <102..185
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          383..575
                     /region_name="Senescence"
                     /note="Senescence domain; pfam06911"
                     /db_xref="CDD:462037"
     CDS             1..596
                     /gene="SPART"
                     /coded_by="XM_054050303.1:105..1895"
                     /db_xref="GeneID:104066121"
ORIGIN      
        1 mehlqdpvvq edanikaine eyrkaficin kglntdeygq keearsyykq gldhllrgis
       61 ipsqgpacvg sqwesarrmq qkmretlqnv harlgileqn npplqaspaa mdapagvskl
      121 ypsipskikp erppppnsvf apsqppaadg svatvsqgqt pamspssakp lclpneappa
      181 ytpqatnghf tvsygtdsge fssvgedyys kcnrpppien lgvdadelil ipqgvqiffv
      241 tpdgqvsaps ypgylrivkf ldtdsaavqs rppaflqvcd wlyplmcnqs pvlccntgvy
      301 mfpdtmsqip gsyvgvvlss elpaadrelf edllkqmsdl riqpseasgd tvnlpqtvhi
      361 ppqpegaeeq kelpewsekv ahgilsgasw vswglvkgae ytgkaihkga sklrehiqpe
      421 ekplevsptv akglhvakqa tggavkvsqf lvegvcsias cvgkelaphv kkhgsklvpe
      481 slkkdkdgks tfdgalvvaa sgvqgfstvw qglesaakci aksvstetvk tvkykygeda
      541 ghatdnamns ainlgvtafn idnigikavv krtaketgha vldeykvldn ekkdkk
//
LOCUS       XP_053906286             589 aa            linear   VRT 09-MAR-2023
DEFINITION  spartin isoform X3 [Cuculus canorus].
ACCESSION   XP_053906286
VERSION     XP_053906286.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050311.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..589
                     /product="spartin isoform X3"
                     /calculated_mol_wt=63569
     Region          18..97
                     /region_name="MIT_spastin"
                     /note="MIT: domain contained within Microtubule
                     Interacting and Trafficking molecules. This MIT domain
                     sub-family is found in the AAA protein spastin, a probable
                     ATPase involved in the assembly or function of nuclear
                     protein complexes; spastins might also be...; cd02679"
                     /db_xref="CDD:239142"
     Region          <102..185
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          418..>567
                     /region_name="Senescence"
                     /note="Senescence domain; pfam06911"
                     /db_xref="CDD:462037"
     CDS             1..589
                     /gene="SPART"
                     /coded_by="XM_054050311.1:109..1878"
                     /db_xref="GeneID:104066121"
ORIGIN      
        1 mehlqdpvvq edanikaine eyrkaficin kglntdeygq keearsyykq gldhllrgis
       61 ipsqgpacvg sqwesarrmq qkmretlqnv harlgileqn npplqaspaa mdapagvskl
      121 ypsipskikp erppppnsvf apsqppaadg svatvsqgqt pamspssakp lclpneappa
      181 ytpqatnghf tvsygtdsge fssvgedyys kcnrpppien lgvdadelil ipqgvqiffv
      241 tpdgqvsaps ypgylrivkf ldtdsaavqs rppaflqvcd wlyplmcnqs pvlccntgvy
      301 mfpdtmsqip gsyvgvvlss elpaadrelf edllkqmsdl riqvpgsher vglsselpas
      361 erahfedkfk qmsghkvqps easgdtvnlp qtvhippqpe gaeeqkelpe wsekvahgil
      421 sgaswvswgl vkgaeytgka ihkgasklre hiqpeekple vsptvakglh vakqatggav
      481 kvsqflvegv csiascvgke laphvkkhgs klvpeslkkd kdgkstfdga lvvaasgvqg
      541 fstvwqgles aakciaksvs tetvktvkyk yknkkygeqq saatksekq
//
LOCUS       XP_053906305             509 aa            linear   VRT 09-MAR-2023
DEFINITION  cytidine and dCMP deaminase domain-containing protein 1 [Cuculus
            canorus].
ACCESSION   XP_053906305
VERSION     XP_053906305.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050330.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..509
                     /product="cytidine and dCMP deaminase domain-containing
                     protein 1"
                     /calculated_mol_wt=56905
     Region          81..>185
                     /region_name="PLN02807"
                     /note="diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase"
                     /db_xref="CDD:215433"
     Region          <93..143
                     /region_name="cytidine_deaminase-like"
                     /note="Cytidine and deoxycytidylate deaminase zinc-binding
                     region. The family contains cytidine deaminases,
                     nucleoside deaminases, deoxycytidylate deaminases and
                     riboflavin deaminases. Also included are the apoBec family
                     of mRNA editing enzymes. All members...; cl00269"
                     /db_xref="CDD:444801"
     Site            order(101..103,125..126,129)
                     /site_type="active"
                     /db_xref="CDD:238613"
     Site            order(101,103,126,129)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:238613"
     Region          314..449
                     /region_name="deoxycytidylate_deaminase"
                     /note="Deoxycytidylate deaminase domain. Deoxycytidylate
                     deaminase catalyzes the deamination of dCMP to dUMP,
                     providing the nucleotide substrate for thymidylate
                     synthase. The enzyme binds Zn++, which is required for
                     catalytic activity. The activity of the...; cd01286"
                     /db_xref="CDD:238613"
     Site            order(355,393,395,420..421,424)
                     /site_type="active"
                     /note="catalytic motif [active]"
                     /db_xref="CDD:238613"
     Site            order(393,395,421,424)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:238613"
     CDS             1..509
                     /gene="CDADC1"
                     /coded_by="XM_054050330.1:11..1540"
                     /db_xref="GeneID:104066152"
ORIGIN      
        1 mgagragpgw gnvvapvpmh gaeeavvagr prvsaastqt dsmagqmprl skvnlftlfs
       61 lwmelfpsae qqkksqvkks glvvvknmki vglhcsstdl hagqialikh gsrlkncdly
      121 fsrkpcstcl kmivnagvnr isywpadpei slqneasnpm ttddakldak averlksnsr
      181 arvcvllqpl vcymvqfvee tstkfdfiqk iaksqpdcnt dfytacrqek ikeyeslfli
      241 sneemhkqil mtmglenlce npyfsnlrqn mkdlvlvlat vaasvpvfgc fgfynsesqq
      301 tnetdhqglp qeiarhcmiq arllayrted hktgvgaiiw aeeksrscdg tgamyfvgcg
      361 ynafpvgsey adfphmddkq kdreirkfry iihaeqnalt frcreikpde rsmifvtkcp
      421 cdecvplikg agikqiyagd vdagkkkadi symkfgeleg vskftwqlnp lhanaldfhd
      481 starengvqk ikslddqqhq nkklclghy
//
LOCUS       XP_053906323             464 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier family 35 member F2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053906323
VERSION     XP_053906323.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050348.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..464
                     /product="solute carrier family 35 member F2 isoform X1"
                     /calculated_mol_wt=48215
     Region          115..413
                     /region_name="SLC35F"
                     /note="Solute carrier family 35; pfam06027"
                     /db_xref="CDD:283644"
     CDS             1..464
                     /gene="SLC35F2"
                     /coded_by="XM_054050348.1:27..1421"
                     /db_xref="GeneID:104055357"
ORIGIN      
        1 meeeapgaag aagaaaetpa gaagaagasg aaaetpagaa gaagagaaga pgagaptpag
       61 gagaagaaga pgagapgaga ptpaggadag aeplpgadta pprrllallg aklctwhilk
      121 tiilgqmlsl ficgtavtsq ylaeryqvnt pmfqsfinys llllvytttl afrtgsdslw
      181 qilkqrwwky iflgladvea nymivkayqy ttltsvqlld cfgipvlmal swfilraryr
      241 lihflavaic llgvgtmvga dilagrqdse gsdvvigdvl vllgaslyai snvseeyivk
      301 nlsrveflgm vglfgtiisg lqlaivehre imkiqwnwki allftvfalc mfglysfmpv
      361 vikvtsatsv nlgiltadly slffglflff ykfsglyils fiiimvgftl ycstptrtae
      421 ptalpqpsst gldnaalkle esdietpavt vqftrgetvv vstd
//
LOCUS       XP_053906329             403 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier family 35 member F2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053906329
VERSION     XP_053906329.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050354.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..403
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..403
                     /product="solute carrier family 35 member F2 isoform X2"
                     /calculated_mol_wt=41753
     Region          115..378
                     /region_name="SLC35F"
                     /note="Solute carrier family 35; pfam06027"
                     /db_xref="CDD:283644"
     CDS             1..403
                     /gene="SLC35F2"
                     /coded_by="XM_054050354.1:28..1239"
                     /db_xref="GeneID:104055357"
ORIGIN      
        1 meeeapgaag aagaaaetpa gaagaagasg aaaetpagaa gaagagaaga pgagaptpag
       61 gagaagaaga pgagapgaga ptpaggadag aeplpgadta pprrllallg aklctwhilk
      121 tiilgqmlsl ficgtavtsq ylaeryqvnt pmfqsfinys llllvytttl afrtgsdslw
      181 qilkqrwwky iflgladvea nymivkayqy ttltsvqlld cfgipvlmal swfilraryr
      241 lihflavaic llgvgtmvga dilagrqdse gsdvvigdvl vllgaslyai snvseeyivk
      301 nlsrveflgm vglfgtiisg lqlaivehre imkiqwnwki allftvfalc mfglysfmpv
      361 vikvtsatsv nlgiltadly slffglflff yklvpavpwa eir
//
LOCUS       XP_053906344            3712 aa            linear   VRT 09-MAR-2023
DEFINITION  dystrophin isoform X1 [Cuculus canorus].
ACCESSION   XP_053906344
VERSION     XP_053906344.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050369.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3712
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3712
                     /product="dystrophin isoform X1"
                     /calculated_mol_wt=428841
     Region          29..139
                     /region_name="CH_DMD_rpt1"
                     /note="first calponin homology (CH) domain found in
                     dystrophin and similar proteins; cd21231"
                     /db_xref="CDD:409080"
     Site            order(29..31,34..35,37..39,41..42,45,130,133,137..139)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:409080"
     Site            order(35,39,90,92..93,96..97,99,108..116,121,123..124,
                     126..127,130..131,134)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409080"
     Region          154..264
                     /region_name="CH_DMD_rpt2"
                     /note="second calponin homology (CH) domain found in
                     dystrophin and similar proteins; cd21233"
                     /db_xref="CDD:409082"
     Site            order(154,158,209,211..212,215..216,218,227..235,242,
                     244..245,247..248,251..252,255)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409082"
     Site            order(157..158,228..232,235,238,240..245,248,251..252,
                     254..255,259..264)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:409082"
     Region          355..573
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            463..468
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          575..795
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            686..691
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          738..949
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            844..849
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          958..1167
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            order(1061..1062,1064..1067)
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1064..1278
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1170..1175
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1177..1384
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1279..1284
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1283..1489
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1383..1388
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1482..1691
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1584..1589
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1694..1790
                     /region_name="Spectrin"
                     /note="Spectrin repeat; pfam00435"
                     /db_xref="CDD:395348"
     Site            1788..1793
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1823..1982
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1890..1895
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2119..2332
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2225..2230
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2481..2697
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2587..2592
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2700..2942
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2812..2817
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2944..>3054
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            3050..3054
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          3068..3097
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(3081,3092)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          3134..3295
                     /region_name="EFh_DMD"
                     /note="EF-hand-like motif found in dystrophin; cd16246"
                     /db_xref="CDD:320004"
     Site            order(3134..3135,3137..3138,3156,3160,3164,3166..3167,
                     3170,3181..3187,3189..3190,3193,3199,3212,3253..3254,3256)
                     /site_type="other"
                     /note="Domain interface"
                     /db_xref="CDD:320004"
     Region          3134..3173
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          3180..3214
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Site            3197..3199
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:320004"
     Region          3220..3256
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          3269..3295
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          3320..3368
                     /region_name="ZZ_dystrophin"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     dystrophin and dystrobrevin. The ZZ motif coordinates two
                     zinc ions and most likely participates in ligand binding
                     or molecular scaffolding. Dystrophin attaches actin
                     filaments to an integral membrane...; cd02334"
                     /db_xref="CDD:239074"
     Site            order(3322,3325,3337,3340,3346,3349,3359,3363)
                     /site_type="other"
                     /note="Zinc-binding sites [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(3322,3325,3346,3349)
                     /site_type="other"
                     /note="zinc cluster 1 [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(3323,3334,3336,3342,3344)
                     /site_type="active"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(3335,3350,3365,3368)
                     /site_type="active"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(3337,3340,3359,3363)
                     /site_type="other"
                     /note="zinc cluster 2 [ion binding]"
                     /db_xref="CDD:239074"
     CDS             1..3712
                     /gene="DMD"
                     /coded_by="XM_054050369.1:13..11151"
                     /db_xref="GeneID:104057367"
ORIGIN      
        1 maeagrsgpa gedeaaadef rdiircrsde redvqkktft kwinaqfakf grryiedlfn
       61 dfrdgrrlle llecltgqkl akekgstrvh alnnvnkalq vlqrnnvdlv nigssdivdg
      121 nhkltlgliw niilhwqvkd vmknimaglq qtnsekills wvrqstrnyp qvnvinftss
      181 wsdglafnal lhshrpdlfd wnvvasqqsp vqrldhafni arkhlgiekl ldpedvatac
      241 pdkksilmyv tslfqvlpqq vtmeaireve mlprhtrvar eeqiqvhhqq lfsqeitvnv
      301 pqrpspspkq rfksyaftkv thtspdqkrr qvppqfletv eektfstvrm wsemdlenyq
      361 taleevltwl lsaedalqaq gdisndvevv keqfhthegf mmeltahqgr vgnvlqagsq
      421 llasgklsdd eeneiqeqmn llnsrweslr vasmekqsnl hkilmdlqnq qlaqladwlt
      481 kteqrtkkid leplgpdled lkhqveehka fqedleqeqv kvnslthmvv vvdensgdka
      541 taaleeqlqh fgnrwaaicr wtedrwillq dilrkwqhfa eeqclfdawl tekedavsqi
      601 httgfkdqne mlanlrklai lkgdlemkrq mmgklkslsq dllvavknka vaqklesrle
      661 nfsqrwdslv qkvertseqi sqpvtttqts ltqttvmetv tmvttreqil vkhakeelpp
      721 ppphkkrqll vdseirkrfd sdttelhswm trseavlqsp efaiyrkegn lsdlrervna
      781 iqrekpekyr klqdasrsae alveqmvneg lnadnirqas eqlksrwief cqllservaw
      841 leyqnniidf ysqlrqleqt aiiaenwlka qptpatdpai vkaqlekckd eiirmstlqp
      901 qierlkarsq vlkekeqgpv fvdadlaaft shfkqiladm earekqlqsi fdslpparyk
      961 etistilgwi qqsetklstp qvavaeyeim eqrlrelkal qnslqeqqkg lnylsttved
     1021 lsrkapaevs qrcrtetevi fgqwkklsaq lvehcqkied lmtklqrfqn dtktlkkwma
     1081 evdvflkeew palgdseale kqleqctalv ndiqtiqpsl nsvnevgkkm kseaepefas
     1141 riekelkeln vqwehicqqa yakkaalkgg ldktvslrkd lsemhewitq aeeeylerdf
     1201 eyktpdelqr aveelkrake eamqkevkvk litdsvnnfi akappaahea lkkelddlit
     1261 syqrlcsrln gkcktleevw acwrellsyl daenkwlnei elklkateni qggaeeises
     1321 ldslerlmrh pednrnqire laqtltdggi ldelinekle kfntrweelq qeavrrqksl
     1381 eqsiqsaqet dktlrliqes lavidkqlta yisdrvdaaq vpqeaqkiqs eltsheisle
     1441 emkkrnrgkd aakrvlsqid vaqkklqdvs mkfrlfqkpa nfeqrlqeck rildevklqv
     1501 pkmetksveq elvqsqldhc mklyktlsev ksevetvikt grqivqkqqt enpkelderl
     1561 talklqyndl gakvtekkqe lekclklsrk lrkeinavte wlaatdaelt krstvqgmps
     1621 nldaeiawgk atrkeiekrq vhlksisdlg enlktvlkgk eslvedklsl lnsnwiavts
     1681 raeewfnlll eyqklmdafd qnvanvttwm yraeilldes dkqkpqqkee ilkrlkaeln
     1741 dmhpkvdfvr dqavdlmtnr gdhcrkviep klselnqrfa aisqriksgk pftplkeleq
     1801 fdfdiqkmle pleveiqqgv nlkeedfnkd msedestvke llqrgdmlqk ritderkree
     1861 ikikqqllqt khnvlkdlrs qrrkkaleis hqwyqykrqa ddlmtwlddi ekklaslpdh
     1921 kdeqklkeid gelqkkkedl navhrqadrl skdgaakave ptliqlskrw qdfeskfaqf
     1981 rrlnyaqiqt vhedtafvmt etvtvetthv pstylaeilh llqalseveg rlnspvlqak
     2041 dyedlfkqee clksikdslg rltgdidiih nkkisalqsa ipkeaasiqe kltqlnfqwe
     2101 kvnkmyrdrq arfdkslekw qlfhsdmksf nhwlteteek laraqveagd vghaktnqfl
     2161 qelqdgigrq qtvvktlnvt geeiieqsst tdakvlkeql eslntrwqei crqlvekkkr
     2221 leeeknilsg fqedldkltl wleeadsivc ipldpgnedq lrdclnkvkl rveelpphkg
     2281 ilkrlnetgg ialgsaslnp dkkhklertl keanhrllkv skdlpekqkq ieillkdfie
     2341 ldqqlnqvil wvtpvknqle lynkvgqpga fdiketeaav qakepnveev lskgchlyke
     2401 kpathpvkkk lealdadwka ihlllqqlke kpplgafglv psgvltsget vavdtqtrvt
     2461 ketttfkpem pssvllevpa ladfnkawae ltdwlsrldr eiksqrvivg dlddindmii
     2521 kqkailqdle qrrpqldeli taaqnlknkt snqeartiit driekiqsqw devhghlqnr
     2581 rqqlhemlkd stqwleakre aeqvleqaka kleswkeisy tvealkkqnt elkqftkeir
     2641 qwqinvdvan dmalkllrdy saddtrkvel mtdninatwa ainkrvcere aelesalrml
     2701 qqfyldlekf lawlteaett anvlqdathk ekiledaktv relmkqwqel qaeidvhtdi
     2761 fhnldengqk ilrslegsed atllqrrldn mnlrwselrk kslnirshle astdqwkrlh
     2821 lslqellawl qlkedelkqq apiggdlptv qkqndihrtf krelktkepv irsaletvri
     2881 fsveqpvegl eklypeprel speersqnvt kllqrqadev rnewdklnlq sadwqkkidd
     2941 alerlqglqd amdeldlklr qaevfkaswq pvgdllidsl qdhlekvkvy raemiplkek
     3001 vhqvnelahr ftpsdiqlsq ynlscvedln trwkvlqvai derirqlhea hrdfgptsqh
     3061 flttsvqgpw eraispnkvp yyinhetqtt cwdhpkmtel yqsladlnnv rfsayrtamk
     3121 lrrlqkalcl dllslsaacd aldqhnlkqn dqpmdilqii nclttiydrl eqdhnnlvnv
     3181 plcvdmclnw llnvydtgrt grirvlsfkt gvvslckahl edkyrylfkq vasstgfcdq
     3241 rrlglllhds iqiprqlgev asfggsniep svrscfqfan nkpeieaalf ldwmrlepqs
     3301 mvwlpvlhrv aaaetakhqa kcnickecpi igfryrslkh fnydicqscf fsgrvakghk
     3361 mhypmveyct pttsgedvrd fakvlknkfr tkryfakhpr mgylpvqtvl egdnmetpvt
     3421 linfwpvdsa passpqlshd dthsriehya srlaementn gsylndsisp nesiddehll
     3481 iqhycqslnq esplsqprsp aqilislese ergelerila dleeenrnlq aeydrlkqqh
     3541 dhkglsplps ppemmpvspq sprdaeliae akllrqhkgr learmqiled hnkqlesqlh
     3601 rlrqlleqpq adakvngttl sspstslqrs dssqpmllrv vgsqtsetmg edellsppqd
     3661 tstgleevme qlnnsfpssr ghnvgslfhm addlgramet lvtvmtddkv le
//
LOCUS       XP_053906354            3558 aa            linear   VRT 09-MAR-2023
DEFINITION  dystrophin isoform X2 [Cuculus canorus].
ACCESSION   XP_053906354
VERSION     XP_053906354.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050379.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3558
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3558
                     /product="dystrophin isoform X2"
                     /calculated_mol_wt=411310
     Region          13..123
                     /region_name="CH_DMD_rpt2"
                     /note="second calponin homology (CH) domain found in
                     dystrophin and similar proteins; cd21233"
                     /db_xref="CDD:409082"
     Site            order(13,17,68,70..71,74..75,77,86..94,101,103..104,
                     106..107,110..111,114)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409082"
     Site            order(16..17,87..91,94,97,99..104,107,110..111,113..114,
                     118..123)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:409082"
     Region          214..432
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            322..327
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          434..654
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            545..550
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          597..808
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            703..708
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          817..1026
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            order(920..921,923..926)
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          923..1137
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1029..1034
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1036..1243
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1138..1143
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1142..1348
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1242..1247
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1341..1550
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1443..1448
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1553..1649
                     /region_name="Spectrin"
                     /note="Spectrin repeat; pfam00435"
                     /db_xref="CDD:395348"
     Site            1647..1652
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1682..1841
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1749..1754
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1978..2191
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2084..2089
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2340..2556
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2446..2451
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2559..2801
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2671..2676
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2803..>2913
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2909..2913
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2927..2956
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(2940,2951)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          2993..3154
                     /region_name="EFh_DMD"
                     /note="EF-hand-like motif found in dystrophin; cd16246"
                     /db_xref="CDD:320004"
     Site            order(2993..2994,2996..2997,3015,3019,3023,3025..3026,
                     3029,3040..3046,3048..3049,3052,3058,3071,3112..3113,3115)
                     /site_type="other"
                     /note="Domain interface"
                     /db_xref="CDD:320004"
     Region          2993..3032
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          3039..3073
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Site            3056..3058
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:320004"
     Region          3079..3115
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          3128..3154
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          3179..3227
                     /region_name="ZZ_dystrophin"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     dystrophin and dystrobrevin. The ZZ motif coordinates two
                     zinc ions and most likely participates in ligand binding
                     or molecular scaffolding. Dystrophin attaches actin
                     filaments to an integral membrane...; cd02334"
                     /db_xref="CDD:239074"
     Site            order(3181,3184,3196,3199,3205,3208,3218,3222)
                     /site_type="other"
                     /note="Zinc-binding sites [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(3181,3184,3205,3208)
                     /site_type="other"
                     /note="zinc cluster 1 [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(3182,3193,3195,3201,3203)
                     /site_type="active"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(3194,3209,3224,3227)
                     /site_type="active"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(3196,3199,3218,3222)
                     /site_type="other"
                     /note="zinc cluster 2 [ion binding]"
                     /db_xref="CDD:239074"
     CDS             1..3558
                     /gene="DMD"
                     /coded_by="XM_054050379.1:339..11015"
                     /db_xref="GeneID:104057367"
ORIGIN      
        1 mknimaglqq tnsekillsw vrqstrnypq vnvinftssw sdglafnall hshrpdlfdw
       61 nvvasqqspv qrldhafnia rkhlgiekll dpedvatacp dkksilmyvt slfqvlpqqv
      121 tmeairevem lprhtrvare eqiqvhhqql fsqeitvnvp qrpspspkqr fksyaftkvt
      181 htspdqkrrq vppqfletve ektfstvrmw semdlenyqt aleevltwll saedalqaqg
      241 disndvevvk eqfhthegfm meltahqgrv gnvlqagsql lasgklsdde eneiqeqmnl
      301 lnsrweslrv asmekqsnlh kilmdlqnqq laqladwltk teqrtkkidl eplgpdledl
      361 khqveehkaf qedleqeqvk vnslthmvvv vdensgdkat aaleeqlqhf gnrwaaicrw
      421 tedrwillqd ilrkwqhfae eqclfdawlt ekedavsqih ttgfkdqnem lanlrklail
      481 kgdlemkrqm mgklkslsqd llvavknkav aqklesrlen fsqrwdslvq kvertseqis
      541 qpvtttqtsl tqttvmetvt mvttreqilv khakeelppp pphkkrqllv dseirkrfds
      601 dttelhswmt rseavlqspe faiyrkegnl sdlrervnai qrekpekyrk lqdasrsaea
      661 lveqmvnegl nadnirqase qlksrwiefc qllservawl eyqnniidfy sqlrqleqta
      721 iiaenwlkaq ptpatdpaiv kaqlekckde iirmstlqpq ierlkarsqv lkekeqgpvf
      781 vdadlaafts hfkqiladme arekqlqsif dslpparyke tistilgwiq qsetklstpq
      841 vavaeyeime qrlrelkalq nslqeqqkgl nylsttvedl srkapaevsq rcrtetevif
      901 gqwkklsaql vehcqkiedl mtklqrfqnd tktlkkwmae vdvflkeewp algdsealek
      961 qleqctalvn diqtiqpsln svnevgkkmk seaepefasr iekelkelnv qwehicqqay
     1021 akkaalkggl dktvslrkdl semhewitqa eeeylerdfe yktpdelqra veelkrakee
     1081 amqkevkvkl itdsvnnfia kappaaheal kkelddlits yqrlcsrlng kcktleevwa
     1141 cwrellsyld aenkwlneie lklkateniq ggaeeisesl dslerlmrhp ednrnqirel
     1201 aqtltdggil delineklek fntrweelqq eavrrqksle qsiqsaqetd ktlrliqesl
     1261 avidkqltay isdrvdaaqv pqeaqkiqse ltsheislee mkkrnrgkda akrvlsqidv
     1321 aqkklqdvsm kfrlfqkpan feqrlqeckr ildevklqvp kmetksveqe lvqsqldhcm
     1381 klyktlsevk sevetviktg rqivqkqqte npkelderlt alklqyndlg akvtekkqel
     1441 ekclklsrkl rkeinavtew laatdaeltk rstvqgmpsn ldaeiawgka trkeiekrqv
     1501 hlksisdlge nlktvlkgke slvedklsll nsnwiavtsr aeewfnllle yqklmdafdq
     1561 nvanvttwmy raeilldesd kqkpqqkeei lkrlkaelnd mhpkvdfvrd qavdlmtnrg
     1621 dhcrkviepk lselnqrfaa isqriksgkp ftplkeleqf dfdiqkmlep leveiqqgvn
     1681 lkeedfnkdm sedestvkel lqrgdmlqkr itderkreei kikqqllqtk hnvlkdlrsq
     1741 rrkkaleish qwyqykrqad dlmtwlddie kklaslpdhk deqklkeidg elqkkkedln
     1801 avhrqadrls kdgaakavep tliqlskrwq dfeskfaqfr rlnyaqiqtv hedtafvmte
     1861 tvtvetthvp stylaeilhl lqalsevegr lnspvlqakd yedlfkqeec lksikdslgr
     1921 ltgdidiihn kkisalqsai pkeaasiqek ltqlnfqwek vnkmyrdrqa rfdkslekwq
     1981 lfhsdmksfn hwlteteekl araqveagdv ghaktnqflq elqdgigrqq tvvktlnvtg
     2041 eeiieqsstt dakvlkeqle slntrwqeic rqlvekkkrl eeeknilsgf qedldkltlw
     2101 leeadsivci pldpgnedql rdclnkvklr veelpphkgi lkrlnetggi algsaslnpd
     2161 kkhklertlk eanhrllkvs kdlpekqkqi eillkdfiel dqqlnqvilw vtpvknqlel
     2221 ynkvgqpgaf diketeaavq akepnveevl skgchlykek pathpvkkkl ealdadwkai
     2281 hlllqqlkek pplgafglvp sgvltsgetv avdtqtrvtk etttfkpemp ssvllevpal
     2341 adfnkawael tdwlsrldre iksqrvivgd lddindmiik qkailqdleq rrpqldelit
     2401 aaqnlknkts nqeartiitd riekiqsqwd evhghlqnrr qqlhemlkds tqwleakrea
     2461 eqvleqakak leswkeisyt vealkkqnte lkqftkeirq wqinvdvand malkllrdys
     2521 addtrkvelm tdninatwaa inkrvcerea elesalrmlq qfyldlekfl awlteaetta
     2581 nvlqdathke kiledaktvr elmkqwqelq aeidvhtdif hnldengqki lrslegseda
     2641 tllqrrldnm nlrwselrkk slnirshlea stdqwkrlhl slqellawlq lkedelkqqa
     2701 piggdlptvq kqndihrtfk relktkepvi rsaletvrif sveqpvegle klypeprels
     2761 peersqnvtk llqrqadevr newdklnlqs adwqkkidda lerlqglqda mdeldlklrq
     2821 aevfkaswqp vgdllidslq dhlekvkvyr aemiplkekv hqvnelahrf tpsdiqlsqy
     2881 nlscvedlnt rwkvlqvaid erirqlheah rdfgptsqhf lttsvqgpwe raispnkvpy
     2941 yinhetqttc wdhpkmtely qsladlnnvr fsayrtamkl rrlqkalcld llslsaacda
     3001 ldqhnlkqnd qpmdilqiin clttiydrle qdhnnlvnvp lcvdmclnwl lnvydtgrtg
     3061 rirvlsfktg vvslckahle dkyrylfkqv asstgfcdqr rlglllhdsi qiprqlgeva
     3121 sfggsnieps vrscfqfann kpeieaalfl dwmrlepqsm vwlpvlhrva aaetakhqak
     3181 cnickecpii gfryrslkhf nydicqscff sgrvakghkm hypmveyctp ttsgedvrdf
     3241 akvlknkfrt kryfakhprm gylpvqtvle gdnmetpass pqlshddths riehyasrla
     3301 ementngsyl ndsispnesi ddehlliqhy cqslnqespl sqprspaqil isleseerge
     3361 leriladlee enrnlqaeyd rlkqqhdhkg lsplpsppem mpvspqsprd aeliaeakll
     3421 rqhkgrlear mqiledhnkq lesqlhrlrq lleqpqadak vngttlssps tslqrsdssq
     3481 pmllrvvgsq tsetmgedel lsppqdtstg leevmeqlnn sfpssrghnv gslfhmaddl
     3541 grametlvtv mtddkvle
//
LOCUS       XP_053906360            3553 aa            linear   VRT 09-MAR-2023
DEFINITION  dystrophin isoform X3 [Cuculus canorus].
ACCESSION   XP_053906360
VERSION     XP_053906360.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050385.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3553
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3553
                     /product="dystrophin isoform X3"
                     /calculated_mol_wt=410731
     Region          13..123
                     /region_name="CH_DMD_rpt2"
                     /note="second calponin homology (CH) domain found in
                     dystrophin and similar proteins; cd21233"
                     /db_xref="CDD:409082"
     Site            order(13,17,68,70..71,74..75,77,86..94,101,103..104,
                     106..107,110..111,114)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409082"
     Site            order(16..17,87..91,94,97,99..104,107,110..111,113..114,
                     118..123)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:409082"
     Region          214..432
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            322..327
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          434..654
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            545..550
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          597..808
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            703..708
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          817..1026
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            order(920..921,923..926)
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          923..1137
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1029..1034
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1036..1243
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1138..1143
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1142..1348
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1242..1247
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1341..1550
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1443..1448
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1553..1649
                     /region_name="Spectrin"
                     /note="Spectrin repeat; pfam00435"
                     /db_xref="CDD:395348"
     Site            1647..1652
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1682..1841
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1749..1754
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1978..2191
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2083..2088
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2340..2556
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2446..2451
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2559..2801
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2671..2676
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2803..>2913
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2909..2913
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2927..2956
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(2940,2951)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          2993..3154
                     /region_name="EFh_DMD"
                     /note="EF-hand-like motif found in dystrophin; cd16246"
                     /db_xref="CDD:320004"
     Site            order(2993..2994,2996..2997,3015,3019,3023,3025..3026,
                     3029,3040..3046,3048..3049,3052,3058,3071,3112..3113,3115)
                     /site_type="other"
                     /note="Domain interface"
                     /db_xref="CDD:320004"
     Region          2993..3032
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          3039..3073
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Site            3056..3058
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:320004"
     Region          3079..3115
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          3128..3154
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          3179..3227
                     /region_name="ZZ_dystrophin"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     dystrophin and dystrobrevin. The ZZ motif coordinates two
                     zinc ions and most likely participates in ligand binding
                     or molecular scaffolding. Dystrophin attaches actin
                     filaments to an integral membrane...; cd02334"
                     /db_xref="CDD:239074"
     Site            order(3181,3184,3196,3199,3205,3208,3218,3222)
                     /site_type="other"
                     /note="Zinc-binding sites [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(3181,3184,3205,3208)
                     /site_type="other"
                     /note="zinc cluster 1 [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(3182,3193,3195,3201,3203)
                     /site_type="active"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(3194,3209,3224,3227)
                     /site_type="active"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(3196,3199,3218,3222)
                     /site_type="other"
                     /note="zinc cluster 2 [ion binding]"
                     /db_xref="CDD:239074"
     CDS             1..3553
                     /gene="DMD"
                     /coded_by="XM_054050385.1:339..11000"
                     /db_xref="GeneID:104057367"
ORIGIN      
        1 mknimaglqq tnsekillsw vrqstrnypq vnvinftssw sdglafnall hshrpdlfdw
       61 nvvasqqspv qrldhafnia rkhlgiekll dpedvatacp dkksilmyvt slfqvlpqqv
      121 tmeairevem lprhtrvare eqiqvhhqql fsqeitvnvp qrpspspkqr fksyaftkvt
      181 htspdqkrrq vppqfletve ektfstvrmw semdlenyqt aleevltwll saedalqaqg
      241 disndvevvk eqfhthegfm meltahqgrv gnvlqagsql lasgklsdde eneiqeqmnl
      301 lnsrweslrv asmekqsnlh kilmdlqnqq laqladwltk teqrtkkidl eplgpdledl
      361 khqveehkaf qedleqeqvk vnslthmvvv vdensgdkat aaleeqlqhf gnrwaaicrw
      421 tedrwillqd ilrkwqhfae eqclfdawlt ekedavsqih ttgfkdqnem lanlrklail
      481 kgdlemkrqm mgklkslsqd llvavknkav aqklesrlen fsqrwdslvq kvertseqis
      541 qpvtttqtsl tqttvmetvt mvttreqilv khakeelppp pphkkrqllv dseirkrfds
      601 dttelhswmt rseavlqspe faiyrkegnl sdlrervnai qrekpekyrk lqdasrsaea
      661 lveqmvnegl nadnirqase qlksrwiefc qllservawl eyqnniidfy sqlrqleqta
      721 iiaenwlkaq ptpatdpaiv kaqlekckde iirmstlqpq ierlkarsqv lkekeqgpvf
      781 vdadlaafts hfkqiladme arekqlqsif dslpparyke tistilgwiq qsetklstpq
      841 vavaeyeime qrlrelkalq nslqeqqkgl nylsttvedl srkapaevsq rcrtetevif
      901 gqwkklsaql vehcqkiedl mtklqrfqnd tktlkkwmae vdvflkeewp algdsealek
      961 qleqctalvn diqtiqpsln svnevgkkmk seaepefasr iekelkelnv qwehicqqay
     1021 akkaalkggl dktvslrkdl semhewitqa eeeylerdfe yktpdelqra veelkrakee
     1081 amqkevkvkl itdsvnnfia kappaaheal kkelddlits yqrlcsrlng kcktleevwa
     1141 cwrellsyld aenkwlneie lklkateniq ggaeeisesl dslerlmrhp ednrnqirel
     1201 aqtltdggil delineklek fntrweelqq eavrrqksle qsiqsaqetd ktlrliqesl
     1261 avidkqltay isdrvdaaqv pqeaqkiqse ltsheislee mkkrnrgkda akrvlsqidv
     1321 aqkklqdvsm kfrlfqkpan feqrlqeckr ildevklqvp kmetksveqe lvqsqldhcm
     1381 klyktlsevk sevetviktg rqivqkqqte npkelderlt alklqyndlg akvtekkqel
     1441 ekclklsrkl rkeinavtew laatdaeltk rstvqgmpsn ldaeiawgka trkeiekrqv
     1501 hlksisdlge nlktvlkgke slvedklsll nsnwiavtsr aeewfnllle yqklmdafdq
     1561 nvanvttwmy raeilldesd kqkpqqkeei lkrlkaelnd mhpkvdfvrd qavdlmtnrg
     1621 dhcrkviepk lselnqrfaa isqriksgkp ftplkeleqf dfdiqkmlep leveiqqgvn
     1681 lkeedfnkdm sedestvkel lqrgdmlqkr itderkreei kikqqllqtk hnvlkdlrsq
     1741 rrkkaleish qwyqykrqad dlmtwlddie kklaslpdhk deqklkeidg elqkkkedln
     1801 avhrqadrls kdgaakavep tliqlskrwq dfeskfaqfr rlnyaqiqtv hedtafvmte
     1861 tvtvetthvp stylaeilhl lqalsevegr lnspvlqakd yedlfkqeec lksikdslgr
     1921 ltgdidiihn kkisalqsai pkeaasiqek ltqlnfqwek vnkmyrdrqa rfdkslekwq
     1981 lfhsdmksfn hwlteteekl araqveagdv ghaktnqflq elqdgigrqq tvvktlnvtg
     2041 eeiieqsstt dakvlkeqle slntrwqeic rqlvekkkrl eeeknilsgf qedldkltlw
     2101 leeadsivci pldpgnedql rdclnkvklr veelpphkgi lkrlnetggi algsaslnpd
     2161 kkhklertlk eanhrllkvs kdlpekqkqi eillkdfiel dqqlnqvilw vtpvknqlel
     2221 ynkvgqpgaf diketeaavq akepnveevl skgchlykek pathpvkkkl ealdadwkai
     2281 hlllqqlkek pplgafglvp sgvltsgetv avdtqtrvtk etttfkpemp ssvllevpal
     2341 adfnkawael tdwlsrldre iksqrvivgd lddindmiik qkailqdleq rrpqldelit
     2401 aaqnlknkts nqeartiitd riekiqsqwd evhghlqnrr qqlhemlkds tqwleakrea
     2461 eqvleqakak leswkeisyt vealkkqnte lkqftkeirq wqinvdvand malkllrdys
     2521 addtrkvelm tdninatwaa inkrvcerea elesalrmlq qfyldlekfl awlteaetta
     2581 nvlqdathke kiledaktvr elmkqwqelq aeidvhtdif hnldengqki lrslegseda
     2641 tllqrrldnm nlrwselrkk slnirshlea stdqwkrlhl slqellawlq lkedelkqqa
     2701 piggdlptvq kqndihrtfk relktkepvi rsaletvrif sveqpvegle klypeprels
     2761 peersqnvtk llqrqadevr newdklnlqs adwqkkidda lerlqglqda mdeldlklrq
     2821 aevfkaswqp vgdllidslq dhlekvkvyr aemiplkekv hqvnelahrf tpsdiqlsqy
     2881 nlscvedlnt rwkvlqvaid erirqlheah rdfgptsqhf lttsvqgpwe raispnkvpy
     2941 yinhetqttc wdhpkmtely qsladlnnvr fsayrtamkl rrlqkalcld llslsaacda
     3001 ldqhnlkqnd qpmdilqiin clttiydrle qdhnnlvnvp lcvdmclnwl lnvydtgrtg
     3061 rirvlsfktg vvslckahle dkyrylfkqv asstgfcdqr rlglllhdsi qiprqlgeva
     3121 sfggsnieps vrscfqfann kpeieaalfl dwmrlepqsm vwlpvlhrva aaetakhqak
     3181 cnickecpii gfryrslkhf nydicqscff sgrvakghkm hypmveyctp ttsgedvrdf
     3241 akvlknkfrt kryfakhprm gylpvqtvle gdnmetpvtl infwpvdsap asspqlshdd
     3301 thsriehyas rlaementng sylndsispn esiddehlli qhycqslnqe splsqprspa
     3361 qilislesee rgelerilad leeenrnlqa eydrlkqqhd hkglsplpsp pemmpvspqs
     3421 prdaeliaea kllrqhkgrl earmqiledh nkqlesqlhr lrqlleqpqa dakvngttls
     3481 spstslqrsd ssqpmllrvv gsqtsetmge dellsppqdt stgleevmeq lnnsfpssrg
     3541 rnapgkpvre atm
//
LOCUS       XP_053906368            3698 aa            linear   VRT 09-MAR-2023
DEFINITION  dystrophin isoform X4 [Cuculus canorus].
ACCESSION   XP_053906368
VERSION     XP_053906368.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050393.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3698
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3698
                     /product="dystrophin isoform X4"
                     /calculated_mol_wt=427663
     Region          15..125
                     /region_name="CH_DMD_rpt1"
                     /note="first calponin homology (CH) domain found in
                     dystrophin and similar proteins; cd21231"
                     /db_xref="CDD:409080"
     Site            order(15..17,20..21,23..25,27..28,31,116,119,123..125)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:409080"
     Site            order(21,25,76,78..79,82..83,85,94..102,107,109..110,
                     112..113,116..117,120)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409080"
     Region          140..250
                     /region_name="CH_DMD_rpt2"
                     /note="second calponin homology (CH) domain found in
                     dystrophin and similar proteins; cd21233"
                     /db_xref="CDD:409082"
     Site            order(140,144,195,197..198,201..202,204,213..221,228,
                     230..231,233..234,237..238,241)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409082"
     Site            order(143..144,214..218,221,224,226..231,234,237..238,
                     240..241,245..250)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:409082"
     Region          341..559
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            449..454
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          561..781
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            672..677
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          724..935
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            830..835
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          944..1153
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            order(1047..1048,1050..1053)
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1050..1264
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1156..1161
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1163..1370
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1265..1270
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1269..1475
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1369..1374
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1468..1677
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1570..1575
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1680..1776
                     /region_name="Spectrin"
                     /note="Spectrin repeat; pfam00435"
                     /db_xref="CDD:395348"
     Site            1774..1779
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1809..1968
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1876..1881
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2105..2318
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2210..2215
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2467..2683
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2573..2578
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2686..2928
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2798..2803
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2930..>3040
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            3036..3040
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          3054..3083
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(3067,3078)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          3120..3281
                     /region_name="EFh_DMD"
                     /note="EF-hand-like motif found in dystrophin; cd16246"
                     /db_xref="CDD:320004"
     Site            order(3120..3121,3123..3124,3142,3146,3150,3152..3153,
                     3156,3167..3173,3175..3176,3179,3185,3198,3239..3240,3242)
                     /site_type="other"
                     /note="Domain interface"
                     /db_xref="CDD:320004"
     Region          3120..3159
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          3166..3200
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Site            3183..3185
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:320004"
     Region          3206..3242
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          3255..3281
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          3306..3354
                     /region_name="ZZ_dystrophin"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     dystrophin and dystrobrevin. The ZZ motif coordinates two
                     zinc ions and most likely participates in ligand binding
                     or molecular scaffolding. Dystrophin attaches actin
                     filaments to an integral membrane...; cd02334"
                     /db_xref="CDD:239074"
     Site            order(3308,3311,3323,3326,3332,3335,3345,3349)
                     /site_type="other"
                     /note="Zinc-binding sites [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(3308,3311,3332,3335)
                     /site_type="other"
                     /note="zinc cluster 1 [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(3309,3320,3322,3328,3330)
                     /site_type="active"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(3321,3336,3351,3354)
                     /site_type="active"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(3323,3326,3345,3349)
                     /site_type="other"
                     /note="zinc cluster 2 [ion binding]"
                     /db_xref="CDD:239074"
     CDS             1..3698
                     /gene="DMD"
                     /coded_by="XM_054050393.1:240..11336"
                     /db_xref="GeneID:104057367"
ORIGIN      
        1 msahmlwyee veddyeredv qkktftkwin aqfakfgrry iedlfndfrd grrllellec
       61 ltgqklakek gstrvhalnn vnkalqvlqr nnvdlvnigs sdivdgnhkl tlgliwniil
      121 hwqvkdvmkn imaglqqtns ekillswvrq strnypqvnv inftsswsdg lafnallhsh
      181 rpdlfdwnvv asqqspvqrl dhafniarkh lgieklldpe dvatacpdkk silmyvtslf
      241 qvlpqqvtme airevemlpr htrvareeqi qvhhqqlfsq eitvnvpqrp spspkqrfks
      301 yaftkvthts pdqkrrqvpp qfletveekt fstvrmwsem dlenyqtale evltwllsae
      361 dalqaqgdis ndvevvkeqf hthegfmmel tahqgrvgnv lqagsqllas gklsddeene
      421 iqeqmnllns rweslrvasm ekqsnlhkil mdlqnqqlaq ladwltkteq rtkkidlepl
      481 gpdledlkhq veehkafqed leqeqvkvns lthmvvvvde nsgdkataal eeqlqhfgnr
      541 waaicrwted rwillqdilr kwqhfaeeqc lfdawlteke davsqihttg fkdqnemlan
      601 lrklailkgd lemkrqmmgk lkslsqdllv avknkavaqk lesrlenfsq rwdslvqkve
      661 rtseqisqpv tttqtsltqt tvmetvtmvt treqilvkha keelppppph kkrqllvdse
      721 irkrfdsdtt elhswmtrse avlqspefai yrkegnlsdl rervnaiqre kpekyrklqd
      781 asrsaealve qmvneglnad nirqaseqlk srwiefcqll servawleyq nniidfysql
      841 rqleqtaiia enwlkaqptp atdpaivkaq lekckdeiir mstlqpqier lkarsqvlke
      901 keqgpvfvda dlaaftshfk qiladmeare kqlqsifdsl pparyketis tilgwiqqse
      961 tklstpqvav aeyeimeqrl relkalqnsl qeqqkglnyl sttvedlsrk apaevsqrcr
     1021 tetevifgqw kklsaqlveh cqkiedlmtk lqrfqndtkt lkkwmaevdv flkeewpalg
     1081 dsealekqle qctalvndiq tiqpslnsvn evgkkmksea epefasriek elkelnvqwe
     1141 hicqqayakk aalkggldkt vslrkdlsem hewitqaeee ylerdfeykt pdelqravee
     1201 lkrakeeamq kevkvklitd svnnfiakap paahealkke lddlitsyqr lcsrlngkck
     1261 tleevwacwr ellsyldaen kwlneielkl kateniqgga eeisesldsl erlmrhpedn
     1321 rnqirelaqt ltdggildel ineklekfnt rweelqqeav rrqksleqsi qsaqetdktl
     1381 rliqeslavi dkqltayisd rvdaaqvpqe aqkiqselts heisleemkk rnrgkdaakr
     1441 vlsqidvaqk klqdvsmkfr lfqkpanfeq rlqeckrild evklqvpkme tksveqelvq
     1501 sqldhcmkly ktlsevksev etviktgrqi vqkqqtenpk elderltalk lqyndlgakv
     1561 tekkqelekc lklsrklrke inavtewlaa tdaeltkrst vqgmpsnlda eiawgkatrk
     1621 eiekrqvhlk sisdlgenlk tvlkgkeslv edklsllnsn wiavtsraee wfnllleyqk
     1681 lmdafdqnva nvttwmyrae illdesdkqk pqqkeeilkr lkaelndmhp kvdfvrdqav
     1741 dlmtnrgdhc rkviepklse lnqrfaaisq riksgkpftp lkeleqfdfd iqkmleplev
     1801 eiqqgvnlke edfnkdmsed estvkellqr gdmlqkritd erkreeikik qqllqtkhnv
     1861 lkdlrsqrrk kaleishqwy qykrqaddlm twlddiekkl aslpdhkdeq klkeidgelq
     1921 kkkedlnavh rqadrlskdg aakaveptli qlskrwqdfe skfaqfrrln yaqiqtvhed
     1981 tafvmtetvt vetthvpsty laeilhllqa lsevegrlns pvlqakdyed lfkqeeclks
     2041 ikdslgrltg didiihnkki salqsaipke aasiqekltq lnfqwekvnk myrdrqarfd
     2101 kslekwqlfh sdmksfnhwl teteeklara qveagdvgha ktnqflqelq dgigrqqtvv
     2161 ktlnvtgeei ieqssttdak vlkeqlesln trwqeicrql vekkkrleee knilsgfqed
     2221 ldkltlwlee adsivcipld pgnedqlrdc lnkvklrvee lpphkgilkr lnetggialg
     2281 saslnpdkkh klertlkean hrllkvskdl pekqkqieil lkdfieldqq lnqvilwvtp
     2341 vknqlelynk vgqpgafdik eteaavqake pnveevlskg chlykekpat hpvkkkleal
     2401 dadwkaihll lqqlkekppl gafglvpsgv ltsgetvavd tqtrvtkett tfkpempssv
     2461 llevpaladf nkawaeltdw lsrldreiks qrvivgdldd indmiikqka ilqdleqrrp
     2521 qldelitaaq nlknktsnqe artiitdrie kiqsqwdevh ghlqnrrqql hemlkdstqw
     2581 leakreaeqv leqakakles wkeisytvea lkkqntelkq ftkeirqwqi nvdvandmal
     2641 kllrdysadd trkvelmtdn inatwaaink rvcereaele salrmlqqfy ldlekflawl
     2701 teaettanvl qdathkekil edaktvrelm kqwqelqaei dvhtdifhnl dengqkilrs
     2761 legsedatll qrrldnmnlr wselrkksln irshleastd qwkrlhlslq ellawlqlke
     2821 delkqqapig gdlptvqkqn dihrtfkrel ktkepvirsa letvrifsve qpveglekly
     2881 peprelspee rsqnvtkllq rqadevrnew dklnlqsadw qkkiddaler lqglqdamde
     2941 ldlklrqaev fkaswqpvgd llidslqdhl ekvkvyraem iplkekvhqv nelahrftps
     3001 diqlsqynls cvedlntrwk vlqvaideri rqlheahrdf gptsqhfltt svqgpwerai
     3061 spnkvpyyin hetqttcwdh pkmtelyqsl adlnnvrfsa yrtamklrrl qkalcldlls
     3121 lsaacdaldq hnlkqndqpm dilqiinclt tiydrleqdh nnlvnvplcv dmclnwllnv
     3181 ydtgrtgrir vlsfktgvvs lckahledky rylfkqvass tgfcdqrrlg lllhdsiqip
     3241 rqlgevasfg gsniepsvrs cfqfannkpe ieaalfldwm rlepqsmvwl pvlhrvaaae
     3301 takhqakcni ckecpiigfr yrslkhfnyd icqscffsgr vakghkmhyp mveyctptts
     3361 gedvrdfakv lknkfrtkry fakhprmgyl pvqtvlegdn metpvtlinf wpvdsapass
     3421 pqlshddths riehyasrla ementngsyl ndsispnesi ddehlliqhy cqslnqespl
     3481 sqprspaqil isleseerge leriladlee enrnlqaeyd rlkqqhdhkg lsplpsppem
     3541 mpvspqsprd aeliaeakll rqhkgrlear mqiledhnkq lesqlhrlrq lleqpqadak
     3601 vngttlssps tslqrsdssq pmllrvvgsq tsetmgedel lsppqdtstg leevmeqlnn
     3661 sfpssrghnv gslfhmaddl grametlvtv mtddkvle
//
LOCUS       XP_053906375            3549 aa            linear   VRT 09-MAR-2023
DEFINITION  dystrophin isoform X5 [Cuculus canorus].
ACCESSION   XP_053906375
VERSION     XP_053906375.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050400.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3549
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3549
                     /product="dystrophin isoform X5"
                     /calculated_mol_wt=410277
     Region          13..123
                     /region_name="CH_DMD_rpt2"
                     /note="second calponin homology (CH) domain found in
                     dystrophin and similar proteins; cd21233"
                     /db_xref="CDD:409082"
     Site            order(13,17,68,70..71,74..75,77,86..94,101,103..104,
                     106..107,110..111,114)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409082"
     Site            order(16..17,87..91,94,97,99..104,107,110..111,113..114,
                     118..123)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:409082"
     Region          214..432
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            322..327
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          434..654
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            545..550
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          597..808
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            703..708
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          817..1026
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            order(920..921,923..926)
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          923..1137
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1029..1034
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1036..1243
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1138..1143
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1142..1348
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1242..1247
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1341..1550
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1443..1448
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1553..1649
                     /region_name="Spectrin"
                     /note="Spectrin repeat; pfam00435"
                     /db_xref="CDD:395348"
     Site            1647..1652
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1682..1841
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1749..1754
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1978..2191
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2083..2088
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2340..2556
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2446..2451
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2559..2801
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2671..2676
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2803..>2913
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2909..2913
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2927..2956
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(2940,2951)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          2993..3154
                     /region_name="EFh_DMD"
                     /note="EF-hand-like motif found in dystrophin; cd16246"
                     /db_xref="CDD:320004"
     Site            order(2993..2994,2996..2997,3015,3019,3023,3025..3026,
                     3029,3040..3046,3048..3049,3052,3058,3071,3112..3113,3115)
                     /site_type="other"
                     /note="Domain interface"
                     /db_xref="CDD:320004"
     Region          2993..3032
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          3039..3073
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Site            3056..3058
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:320004"
     Region          3079..3115
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          3128..3154
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          3179..3227
                     /region_name="ZZ_dystrophin"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     dystrophin and dystrobrevin. The ZZ motif coordinates two
                     zinc ions and most likely participates in ligand binding
                     or molecular scaffolding. Dystrophin attaches actin
                     filaments to an integral membrane...; cd02334"
                     /db_xref="CDD:239074"
     Site            order(3181,3184,3196,3199,3205,3208,3218,3222)
                     /site_type="other"
                     /note="Zinc-binding sites [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(3181,3184,3205,3208)
                     /site_type="other"
                     /note="zinc cluster 1 [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(3182,3193,3195,3201,3203)
                     /site_type="active"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(3194,3209,3224,3227)
                     /site_type="active"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(3196,3199,3218,3222)
                     /site_type="other"
                     /note="zinc cluster 2 [ion binding]"
                     /db_xref="CDD:239074"
     CDS             1..3549
                     /gene="DMD"
                     /coded_by="XM_054050400.1:339..10988"
                     /db_xref="GeneID:104057367"
ORIGIN      
        1 mknimaglqq tnsekillsw vrqstrnypq vnvinftssw sdglafnall hshrpdlfdw
       61 nvvasqqspv qrldhafnia rkhlgiekll dpedvatacp dkksilmyvt slfqvlpqqv
      121 tmeairevem lprhtrvare eqiqvhhqql fsqeitvnvp qrpspspkqr fksyaftkvt
      181 htspdqkrrq vppqfletve ektfstvrmw semdlenyqt aleevltwll saedalqaqg
      241 disndvevvk eqfhthegfm meltahqgrv gnvlqagsql lasgklsdde eneiqeqmnl
      301 lnsrweslrv asmekqsnlh kilmdlqnqq laqladwltk teqrtkkidl eplgpdledl
      361 khqveehkaf qedleqeqvk vnslthmvvv vdensgdkat aaleeqlqhf gnrwaaicrw
      421 tedrwillqd ilrkwqhfae eqclfdawlt ekedavsqih ttgfkdqnem lanlrklail
      481 kgdlemkrqm mgklkslsqd llvavknkav aqklesrlen fsqrwdslvq kvertseqis
      541 qpvtttqtsl tqttvmetvt mvttreqilv khakeelppp pphkkrqllv dseirkrfds
      601 dttelhswmt rseavlqspe faiyrkegnl sdlrervnai qrekpekyrk lqdasrsaea
      661 lveqmvnegl nadnirqase qlksrwiefc qllservawl eyqnniidfy sqlrqleqta
      721 iiaenwlkaq ptpatdpaiv kaqlekckde iirmstlqpq ierlkarsqv lkekeqgpvf
      781 vdadlaafts hfkqiladme arekqlqsif dslpparyke tistilgwiq qsetklstpq
      841 vavaeyeime qrlrelkalq nslqeqqkgl nylsttvedl srkapaevsq rcrtetevif
      901 gqwkklsaql vehcqkiedl mtklqrfqnd tktlkkwmae vdvflkeewp algdsealek
      961 qleqctalvn diqtiqpsln svnevgkkmk seaepefasr iekelkelnv qwehicqqay
     1021 akkaalkggl dktvslrkdl semhewitqa eeeylerdfe yktpdelqra veelkrakee
     1081 amqkevkvkl itdsvnnfia kappaaheal kkelddlits yqrlcsrlng kcktleevwa
     1141 cwrellsyld aenkwlneie lklkateniq ggaeeisesl dslerlmrhp ednrnqirel
     1201 aqtltdggil delineklek fntrweelqq eavrrqksle qsiqsaqetd ktlrliqesl
     1261 avidkqltay isdrvdaaqv pqeaqkiqse ltsheislee mkkrnrgkda akrvlsqidv
     1321 aqkklqdvsm kfrlfqkpan feqrlqeckr ildevklqvp kmetksveqe lvqsqldhcm
     1381 klyktlsevk sevetviktg rqivqkqqte npkelderlt alklqyndlg akvtekkqel
     1441 ekclklsrkl rkeinavtew laatdaeltk rstvqgmpsn ldaeiawgka trkeiekrqv
     1501 hlksisdlge nlktvlkgke slvedklsll nsnwiavtsr aeewfnllle yqklmdafdq
     1561 nvanvttwmy raeilldesd kqkpqqkeei lkrlkaelnd mhpkvdfvrd qavdlmtnrg
     1621 dhcrkviepk lselnqrfaa isqriksgkp ftplkeleqf dfdiqkmlep leveiqqgvn
     1681 lkeedfnkdm sedestvkel lqrgdmlqkr itderkreei kikqqllqtk hnvlkdlrsq
     1741 rrkkaleish qwyqykrqad dlmtwlddie kklaslpdhk deqklkeidg elqkkkedln
     1801 avhrqadrls kdgaakavep tliqlskrwq dfeskfaqfr rlnyaqiqtv hedtafvmte
     1861 tvtvetthvp stylaeilhl lqalsevegr lnspvlqakd yedlfkqeec lksikdslgr
     1921 ltgdidiihn kkisalqsai pkeaasiqek ltqlnfqwek vnkmyrdrqa rfdkslekwq
     1981 lfhsdmksfn hwlteteekl araqveagdv ghaktnqflq elqdgigrqq tvvktlnvtg
     2041 eeiieqsstt dakvlkeqle slntrwqeic rqlvekkkrl eeeknilsgf qedldkltlw
     2101 leeadsivci pldpgnedql rdclnkvklr veelpphkgi lkrlnetggi algsaslnpd
     2161 kkhklertlk eanhrllkvs kdlpekqkqi eillkdfiel dqqlnqvilw vtpvknqlel
     2221 ynkvgqpgaf diketeaavq akepnveevl skgchlykek pathpvkkkl ealdadwkai
     2281 hlllqqlkek pplgafglvp sgvltsgetv avdtqtrvtk etttfkpemp ssvllevpal
     2341 adfnkawael tdwlsrldre iksqrvivgd lddindmiik qkailqdleq rrpqldelit
     2401 aaqnlknkts nqeartiitd riekiqsqwd evhghlqnrr qqlhemlkds tqwleakrea
     2461 eqvleqakak leswkeisyt vealkkqnte lkqftkeirq wqinvdvand malkllrdys
     2521 addtrkvelm tdninatwaa inkrvcerea elesalrmlq qfyldlekfl awlteaetta
     2581 nvlqdathke kiledaktvr elmkqwqelq aeidvhtdif hnldengqki lrslegseda
     2641 tllqrrldnm nlrwselrkk slnirshlea stdqwkrlhl slqellawlq lkedelkqqa
     2701 piggdlptvq kqndihrtfk relktkepvi rsaletvrif sveqpvegle klypeprels
     2761 peersqnvtk llqrqadevr newdklnlqs adwqkkidda lerlqglqda mdeldlklrq
     2821 aevfkaswqp vgdllidslq dhlekvkvyr aemiplkekv hqvnelahrf tpsdiqlsqy
     2881 nlscvedlnt rwkvlqvaid erirqlheah rdfgptsqhf lttsvqgpwe raispnkvpy
     2941 yinhetqttc wdhpkmtely qsladlnnvr fsayrtamkl rrlqkalcld llslsaacda
     3001 ldqhnlkqnd qpmdilqiin clttiydrle qdhnnlvnvp lcvdmclnwl lnvydtgrtg
     3061 rirvlsfktg vvslckahle dkyrylfkqv asstgfcdqr rlglllhdsi qiprqlgeva
     3121 sfggsnieps vrscfqfann kpeieaalfl dwmrlepqsm vwlpvlhrva aaetakhqak
     3181 cnickecpii gfryrslkhf nydicqscff sgrvakghkm hypmveyctp ttsgedvrdf
     3241 akvlknkfrt kryfakhprm gylpvqtvle gdnmetpvtl infwpvdsal aementngsy
     3301 lndsispnes iddehlliqh ycqslnqesp lsqprspaqi lisleseerg eleriladle
     3361 eenrnlqaey drlkqqhdhk glsplpsppe mmpvspqspr daeliaeakl lrqhkgrlea
     3421 rmqiledhnk qlesqlhrlr qlleqpqada kvngttlssp stslqrsdss qpmllrvvgs
     3481 qtsetmgede llsppqdtst gleevmeqln nsfpssrghn vgslfhmadd lgrametlvt
     3541 vmtddkvle
//
LOCUS       XP_053906383            3546 aa            linear   VRT 09-MAR-2023
DEFINITION  dystrophin isoform X6 [Cuculus canorus].
ACCESSION   XP_053906383
VERSION     XP_053906383.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050408.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3546
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3546
                     /product="dystrophin isoform X6"
                     /calculated_mol_wt=410080
     Region          13..123
                     /region_name="CH_DMD_rpt2"
                     /note="second calponin homology (CH) domain found in
                     dystrophin and similar proteins; cd21233"
                     /db_xref="CDD:409082"
     Site            order(13,17,68,70..71,74..75,77,86..94,101,103..104,
                     106..107,110..111,114)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409082"
     Site            order(16..17,87..91,94,97,99..104,107,110..111,113..114,
                     118..123)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:409082"
     Region          214..432
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            322..327
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          434..654
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            545..550
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          597..808
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            703..708
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          817..1026
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            order(920..921,923..926)
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          923..1137
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1029..1034
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1036..1243
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1138..1143
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1142..1348
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1242..1247
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1341..1550
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1443..1448
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1553..1649
                     /region_name="Spectrin"
                     /note="Spectrin repeat; pfam00435"
                     /db_xref="CDD:395348"
     Site            1647..1652
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1682..1841
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1749..1754
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1978..2191
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2084..2089
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2340..2556
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2446..2451
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2559..2801
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2671..2676
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2803..>2913
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2909..2913
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2927..2956
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(2940,2951)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          2993..3154
                     /region_name="EFh_DMD"
                     /note="EF-hand-like motif found in dystrophin; cd16246"
                     /db_xref="CDD:320004"
     Site            order(2993..2994,2996..2997,3015,3019,3023,3025..3026,
                     3029,3040..3046,3048..3049,3052,3058,3071,3112..3113,3115)
                     /site_type="other"
                     /note="Domain interface"
                     /db_xref="CDD:320004"
     Region          2993..3032
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          3039..3073
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Site            3056..3058
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:320004"
     Region          3079..3115
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          3128..3154
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          3179..3227
                     /region_name="ZZ_dystrophin"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     dystrophin and dystrobrevin. The ZZ motif coordinates two
                     zinc ions and most likely participates in ligand binding
                     or molecular scaffolding. Dystrophin attaches actin
                     filaments to an integral membrane...; cd02334"
                     /db_xref="CDD:239074"
     Site            order(3181,3184,3196,3199,3205,3208,3218,3222)
                     /site_type="other"
                     /note="Zinc-binding sites [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(3181,3184,3205,3208)
                     /site_type="other"
                     /note="zinc cluster 1 [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(3182,3193,3195,3201,3203)
                     /site_type="active"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(3194,3209,3224,3227)
                     /site_type="active"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(3196,3199,3218,3222)
                     /site_type="other"
                     /note="zinc cluster 2 [ion binding]"
                     /db_xref="CDD:239074"
     CDS             1..3546
                     /gene="DMD"
                     /coded_by="XM_054050408.1:339..10979"
                     /db_xref="GeneID:104057367"
ORIGIN      
        1 mknimaglqq tnsekillsw vrqstrnypq vnvinftssw sdglafnall hshrpdlfdw
       61 nvvasqqspv qrldhafnia rkhlgiekll dpedvatacp dkksilmyvt slfqvlpqqv
      121 tmeairevem lprhtrvare eqiqvhhqql fsqeitvnvp qrpspspkqr fksyaftkvt
      181 htspdqkrrq vppqfletve ektfstvrmw semdlenyqt aleevltwll saedalqaqg
      241 disndvevvk eqfhthegfm meltahqgrv gnvlqagsql lasgklsdde eneiqeqmnl
      301 lnsrweslrv asmekqsnlh kilmdlqnqq laqladwltk teqrtkkidl eplgpdledl
      361 khqveehkaf qedleqeqvk vnslthmvvv vdensgdkat aaleeqlqhf gnrwaaicrw
      421 tedrwillqd ilrkwqhfae eqclfdawlt ekedavsqih ttgfkdqnem lanlrklail
      481 kgdlemkrqm mgklkslsqd llvavknkav aqklesrlen fsqrwdslvq kvertseqis
      541 qpvtttqtsl tqttvmetvt mvttreqilv khakeelppp pphkkrqllv dseirkrfds
      601 dttelhswmt rseavlqspe faiyrkegnl sdlrervnai qrekpekyrk lqdasrsaea
      661 lveqmvnegl nadnirqase qlksrwiefc qllservawl eyqnniidfy sqlrqleqta
      721 iiaenwlkaq ptpatdpaiv kaqlekckde iirmstlqpq ierlkarsqv lkekeqgpvf
      781 vdadlaafts hfkqiladme arekqlqsif dslpparyke tistilgwiq qsetklstpq
      841 vavaeyeime qrlrelkalq nslqeqqkgl nylsttvedl srkapaevsq rcrtetevif
      901 gqwkklsaql vehcqkiedl mtklqrfqnd tktlkkwmae vdvflkeewp algdsealek
      961 qleqctalvn diqtiqpsln svnevgkkmk seaepefasr iekelkelnv qwehicqqay
     1021 akkaalkggl dktvslrkdl semhewitqa eeeylerdfe yktpdelqra veelkrakee
     1081 amqkevkvkl itdsvnnfia kappaaheal kkelddlits yqrlcsrlng kcktleevwa
     1141 cwrellsyld aenkwlneie lklkateniq ggaeeisesl dslerlmrhp ednrnqirel
     1201 aqtltdggil delineklek fntrweelqq eavrrqksle qsiqsaqetd ktlrliqesl
     1261 avidkqltay isdrvdaaqv pqeaqkiqse ltsheislee mkkrnrgkda akrvlsqidv
     1321 aqkklqdvsm kfrlfqkpan feqrlqeckr ildevklqvp kmetksveqe lvqsqldhcm
     1381 klyktlsevk sevetviktg rqivqkqqte npkelderlt alklqyndlg akvtekkqel
     1441 ekclklsrkl rkeinavtew laatdaeltk rstvqgmpsn ldaeiawgka trkeiekrqv
     1501 hlksisdlge nlktvlkgke slvedklsll nsnwiavtsr aeewfnllle yqklmdafdq
     1561 nvanvttwmy raeilldesd kqkpqqkeei lkrlkaelnd mhpkvdfvrd qavdlmtnrg
     1621 dhcrkviepk lselnqrfaa isqriksgkp ftplkeleqf dfdiqkmlep leveiqqgvn
     1681 lkeedfnkdm sedestvkel lqrgdmlqkr itderkreei kikqqllqtk hnvlkdlrsq
     1741 rrkkaleish qwyqykrqad dlmtwlddie kklaslpdhk deqklkeidg elqkkkedln
     1801 avhrqadrls kdgaakavep tliqlskrwq dfeskfaqfr rlnyaqiqtv hedtafvmte
     1861 tvtvetthvp stylaeilhl lqalsevegr lnspvlqakd yedlfkqeec lksikdslgr
     1921 ltgdidiihn kkisalqsai pkeaasiqek ltqlnfqwek vnkmyrdrqa rfdkslekwq
     1981 lfhsdmksfn hwlteteekl araqveagdv ghaktnqflq elqdgigrqq tvvktlnvtg
     2041 eeiieqsstt dakvlkeqle slntrwqeic rqlvekkkrl eeeknilsgf qedldkltlw
     2101 leeadsivci pldpgnedql rdclnkvklr veelpphkgi lkrlnetggi algsaslnpd
     2161 kkhklertlk eanhrllkvs kdlpekqkqi eillkdfiel dqqlnqvilw vtpvknqlel
     2221 ynkvgqpgaf diketeaavq akepnveevl skgchlykek pathpvkkkl ealdadwkai
     2281 hlllqqlkek pplgafglvp sgvltsgetv avdtqtrvtk etttfkpemp ssvllevpal
     2341 adfnkawael tdwlsrldre iksqrvivgd lddindmiik qkailqdleq rrpqldelit
     2401 aaqnlknkts nqeartiitd riekiqsqwd evhghlqnrr qqlhemlkds tqwleakrea
     2461 eqvleqakak leswkeisyt vealkkqnte lkqftkeirq wqinvdvand malkllrdys
     2521 addtrkvelm tdninatwaa inkrvcerea elesalrmlq qfyldlekfl awlteaetta
     2581 nvlqdathke kiledaktvr elmkqwqelq aeidvhtdif hnldengqki lrslegseda
     2641 tllqrrldnm nlrwselrkk slnirshlea stdqwkrlhl slqellawlq lkedelkqqa
     2701 piggdlptvq kqndihrtfk relktkepvi rsaletvrif sveqpvegle klypeprels
     2761 peersqnvtk llqrqadevr newdklnlqs adwqkkidda lerlqglqda mdeldlklrq
     2821 aevfkaswqp vgdllidslq dhlekvkvyr aemiplkekv hqvnelahrf tpsdiqlsqy
     2881 nlscvedlnt rwkvlqvaid erirqlheah rdfgptsqhf lttsvqgpwe raispnkvpy
     2941 yinhetqttc wdhpkmtely qsladlnnvr fsayrtamkl rrlqkalcld llslsaacda
     3001 ldqhnlkqnd qpmdilqiin clttiydrle qdhnnlvnvp lcvdmclnwl lnvydtgrtg
     3061 rirvlsfktg vvslckahle dkyrylfkqv asstgfcdqr rlglllhdsi qiprqlgeva
     3121 sfggsnieps vrscfqfann kpeieaalfl dwmrlepqsm vwlpvlhrva aaetakhqak
     3181 cnickecpii gfryrslkhf nydicqscff sgrvakghkm hypmveyctp ttsgedvrdf
     3241 akvlknkfrt kryfakhprm gylpvqtvle gdnmetpvtl infwpvdsap asspqlshdd
     3301 thsriehyas rlaementng sylndsispn esiddehlli qhycqslnqe splsqprspa
     3361 qilislesee rgelerilad leeenrnlqa eydrlkqqhd hkglsplpsp pemmpvspqs
     3421 prdaeliaea kllrqhkgrl earmqiledh nkqlesqlhr lrqlleqpqa dakvngttls
     3481 spstslqrsd ssqpmllrvv gsqtsetmge dellsppqdt stgleevmeq lnnsfpssre
     3541 mplesq
//
LOCUS       XP_053906392            3536 aa            linear   VRT 09-MAR-2023
DEFINITION  dystrophin isoform X7 [Cuculus canorus].
ACCESSION   XP_053906392
VERSION     XP_053906392.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050417.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3536
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3536
                     /product="dystrophin isoform X7"
                     /calculated_mol_wt=408836
     Region          13..123
                     /region_name="CH_DMD_rpt2"
                     /note="second calponin homology (CH) domain found in
                     dystrophin and similar proteins; cd21233"
                     /db_xref="CDD:409082"
     Site            order(13,17,68,70..71,74..75,77,86..94,101,103..104,
                     106..107,110..111,114)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409082"
     Site            order(16..17,87..91,94,97,99..104,107,110..111,113..114,
                     118..123)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:409082"
     Region          214..432
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            322..327
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          434..654
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            545..550
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          597..808
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            703..708
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          817..1026
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            order(920..921,923..926)
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          923..1137
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1029..1034
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1036..1243
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1138..1143
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1142..1348
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1242..1247
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1341..1550
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1443..1448
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1553..1649
                     /region_name="Spectrin"
                     /note="Spectrin repeat; pfam00435"
                     /db_xref="CDD:395348"
     Site            1647..1652
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1682..1841
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1749..1754
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1978..2191
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2084..2089
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2340..2556
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2446..2451
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2559..2801
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2671..2676
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2803..>2913
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2909..2913
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2927..2956
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(2940,2951)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          2993..3154
                     /region_name="EFh_DMD"
                     /note="EF-hand-like motif found in dystrophin; cd16246"
                     /db_xref="CDD:320004"
     Site            order(2993..2994,2996..2997,3015,3019,3023,3025..3026,
                     3029,3040..3046,3048..3049,3052,3058,3071,3112..3113,3115)
                     /site_type="other"
                     /note="Domain interface"
                     /db_xref="CDD:320004"
     Region          2993..3032
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          3039..3073
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Site            3056..3058
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:320004"
     Region          3079..3115
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          3128..3154
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          3179..3227
                     /region_name="ZZ_dystrophin"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     dystrophin and dystrobrevin. The ZZ motif coordinates two
                     zinc ions and most likely participates in ligand binding
                     or molecular scaffolding. Dystrophin attaches actin
                     filaments to an integral membrane...; cd02334"
                     /db_xref="CDD:239074"
     Site            order(3181,3184,3196,3199,3205,3208,3218,3222)
                     /site_type="other"
                     /note="Zinc-binding sites [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(3181,3184,3205,3208)
                     /site_type="other"
                     /note="zinc cluster 1 [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(3182,3193,3195,3201,3203)
                     /site_type="active"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(3194,3209,3224,3227)
                     /site_type="active"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(3196,3199,3218,3222)
                     /site_type="other"
                     /note="zinc cluster 2 [ion binding]"
                     /db_xref="CDD:239074"
     CDS             1..3536
                     /gene="DMD"
                     /coded_by="XM_054050417.1:339..10949"
                     /db_xref="GeneID:104057367"
ORIGIN      
        1 mknimaglqq tnsekillsw vrqstrnypq vnvinftssw sdglafnall hshrpdlfdw
       61 nvvasqqspv qrldhafnia rkhlgiekll dpedvatacp dkksilmyvt slfqvlpqqv
      121 tmeairevem lprhtrvare eqiqvhhqql fsqeitvnvp qrpspspkqr fksyaftkvt
      181 htspdqkrrq vppqfletve ektfstvrmw semdlenyqt aleevltwll saedalqaqg
      241 disndvevvk eqfhthegfm meltahqgrv gnvlqagsql lasgklsdde eneiqeqmnl
      301 lnsrweslrv asmekqsnlh kilmdlqnqq laqladwltk teqrtkkidl eplgpdledl
      361 khqveehkaf qedleqeqvk vnslthmvvv vdensgdkat aaleeqlqhf gnrwaaicrw
      421 tedrwillqd ilrkwqhfae eqclfdawlt ekedavsqih ttgfkdqnem lanlrklail
      481 kgdlemkrqm mgklkslsqd llvavknkav aqklesrlen fsqrwdslvq kvertseqis
      541 qpvtttqtsl tqttvmetvt mvttreqilv khakeelppp pphkkrqllv dseirkrfds
      601 dttelhswmt rseavlqspe faiyrkegnl sdlrervnai qrekpekyrk lqdasrsaea
      661 lveqmvnegl nadnirqase qlksrwiefc qllservawl eyqnniidfy sqlrqleqta
      721 iiaenwlkaq ptpatdpaiv kaqlekckde iirmstlqpq ierlkarsqv lkekeqgpvf
      781 vdadlaafts hfkqiladme arekqlqsif dslpparyke tistilgwiq qsetklstpq
      841 vavaeyeime qrlrelkalq nslqeqqkgl nylsttvedl srkapaevsq rcrtetevif
      901 gqwkklsaql vehcqkiedl mtklqrfqnd tktlkkwmae vdvflkeewp algdsealek
      961 qleqctalvn diqtiqpsln svnevgkkmk seaepefasr iekelkelnv qwehicqqay
     1021 akkaalkggl dktvslrkdl semhewitqa eeeylerdfe yktpdelqra veelkrakee
     1081 amqkevkvkl itdsvnnfia kappaaheal kkelddlits yqrlcsrlng kcktleevwa
     1141 cwrellsyld aenkwlneie lklkateniq ggaeeisesl dslerlmrhp ednrnqirel
     1201 aqtltdggil delineklek fntrweelqq eavrrqksle qsiqsaqetd ktlrliqesl
     1261 avidkqltay isdrvdaaqv pqeaqkiqse ltsheislee mkkrnrgkda akrvlsqidv
     1321 aqkklqdvsm kfrlfqkpan feqrlqeckr ildevklqvp kmetksveqe lvqsqldhcm
     1381 klyktlsevk sevetviktg rqivqkqqte npkelderlt alklqyndlg akvtekkqel
     1441 ekclklsrkl rkeinavtew laatdaeltk rstvqgmpsn ldaeiawgka trkeiekrqv
     1501 hlksisdlge nlktvlkgke slvedklsll nsnwiavtsr aeewfnllle yqklmdafdq
     1561 nvanvttwmy raeilldesd kqkpqqkeei lkrlkaelnd mhpkvdfvrd qavdlmtnrg
     1621 dhcrkviepk lselnqrfaa isqriksgkp ftplkeleqf dfdiqkmlep leveiqqgvn
     1681 lkeedfnkdm sedestvkel lqrgdmlqkr itderkreei kikqqllqtk hnvlkdlrsq
     1741 rrkkaleish qwyqykrqad dlmtwlddie kklaslpdhk deqklkeidg elqkkkedln
     1801 avhrqadrls kdgaakavep tliqlskrwq dfeskfaqfr rlnyaqiqtv hedtafvmte
     1861 tvtvetthvp stylaeilhl lqalsevegr lnspvlqakd yedlfkqeec lksikdslgr
     1921 ltgdidiihn kkisalqsai pkeaasiqek ltqlnfqwek vnkmyrdrqa rfdkslekwq
     1981 lfhsdmksfn hwlteteekl araqveagdv ghaktnqflq elqdgigrqq tvvktlnvtg
     2041 eeiieqsstt dakvlkeqle slntrwqeic rqlvekkkrl eeeknilsgf qedldkltlw
     2101 leeadsivci pldpgnedql rdclnkvklr veelpphkgi lkrlnetggi algsaslnpd
     2161 kkhklertlk eanhrllkvs kdlpekqkqi eillkdfiel dqqlnqvilw vtpvknqlel
     2221 ynkvgqpgaf diketeaavq akepnveevl skgchlykek pathpvkkkl ealdadwkai
     2281 hlllqqlkek pplgafglvp sgvltsgetv avdtqtrvtk etttfkpemp ssvllevpal
     2341 adfnkawael tdwlsrldre iksqrvivgd lddindmiik qkailqdleq rrpqldelit
     2401 aaqnlknkts nqeartiitd riekiqsqwd evhghlqnrr qqlhemlkds tqwleakrea
     2461 eqvleqakak leswkeisyt vealkkqnte lkqftkeirq wqinvdvand malkllrdys
     2521 addtrkvelm tdninatwaa inkrvcerea elesalrmlq qfyldlekfl awlteaetta
     2581 nvlqdathke kiledaktvr elmkqwqelq aeidvhtdif hnldengqki lrslegseda
     2641 tllqrrldnm nlrwselrkk slnirshlea stdqwkrlhl slqellawlq lkedelkqqa
     2701 piggdlptvq kqndihrtfk relktkepvi rsaletvrif sveqpvegle klypeprels
     2761 peersqnvtk llqrqadevr newdklnlqs adwqkkidda lerlqglqda mdeldlklrq
     2821 aevfkaswqp vgdllidslq dhlekvkvyr aemiplkekv hqvnelahrf tpsdiqlsqy
     2881 nlscvedlnt rwkvlqvaid erirqlheah rdfgptsqhf lttsvqgpwe raispnkvpy
     2941 yinhetqttc wdhpkmtely qsladlnnvr fsayrtamkl rrlqkalcld llslsaacda
     3001 ldqhnlkqnd qpmdilqiin clttiydrle qdhnnlvnvp lcvdmclnwl lnvydtgrtg
     3061 rirvlsfktg vvslckahle dkyrylfkqv asstgfcdqr rlglllhdsi qiprqlgeva
     3121 sfggsnieps vrscfqfann kpeieaalfl dwmrlepqsm vwlpvlhrva aaetakhqak
     3181 cnickecpii gfryrslkhf nydicqscff sgrvakghkm hypmveyctp ttsgedvrdf
     3241 akvlknkfrt kryfakhprm gylpvqtvle gdnmetlaem entngsylnd sispnesidd
     3301 ehlliqhycq slnqesplsq prspaqilis leseergele riladleeen rnlqaeydrl
     3361 kqqhdhkgls plpsppemmp vspqsprdae liaeakllrq hkgrlearmq iledhnkqle
     3421 sqlhrlrqll eqpqadakvn gttlsspsts lqrsdssqpm llrvvgsqts etmgedells
     3481 ppqdtstgle evmeqlnnsf pssrghnvgs lfhmaddlgr ametlvtvmt ddkvle
//
LOCUS       XP_053906400            3531 aa            linear   VRT 09-MAR-2023
DEFINITION  dystrophin isoform X8 [Cuculus canorus].
ACCESSION   XP_053906400
VERSION     XP_053906400.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050425.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3531
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3531
                     /product="dystrophin isoform X8"
                     /calculated_mol_wt=408258
     Region          13..123
                     /region_name="CH_DMD_rpt2"
                     /note="second calponin homology (CH) domain found in
                     dystrophin and similar proteins; cd21233"
                     /db_xref="CDD:409082"
     Site            order(13,17,68,70..71,74..75,77,86..94,101,103..104,
                     106..107,110..111,114)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409082"
     Site            order(16..17,87..91,94,97,99..104,107,110..111,113..114,
                     118..123)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:409082"
     Region          214..432
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            322..327
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          434..654
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            545..550
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          597..808
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            703..708
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          817..1026
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            order(920..921,923..926)
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          923..1137
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1029..1034
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1036..1243
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1138..1143
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1142..1348
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1242..1247
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1341..1550
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1443..1448
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1553..1649
                     /region_name="Spectrin"
                     /note="Spectrin repeat; pfam00435"
                     /db_xref="CDD:395348"
     Site            1647..1652
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1682..1841
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1749..1754
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1978..2191
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2083..2088
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2340..2556
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2446..2451
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2559..2801
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2671..2676
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2803..>2913
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2909..2913
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2927..2956
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(2940,2951)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          2993..3154
                     /region_name="EFh_DMD"
                     /note="EF-hand-like motif found in dystrophin; cd16246"
                     /db_xref="CDD:320004"
     Site            order(2993..2994,2996..2997,3015,3019,3023,3025..3026,
                     3029,3040..3046,3048..3049,3052,3058,3071,3112..3113,3115)
                     /site_type="other"
                     /note="Domain interface"
                     /db_xref="CDD:320004"
     Region          2993..3032
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          3039..3073
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Site            3056..3058
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:320004"
     Region          3079..3115
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          3128..3154
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          3179..3227
                     /region_name="ZZ_dystrophin"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     dystrophin and dystrobrevin. The ZZ motif coordinates two
                     zinc ions and most likely participates in ligand binding
                     or molecular scaffolding. Dystrophin attaches actin
                     filaments to an integral membrane...; cd02334"
                     /db_xref="CDD:239074"
     Site            order(3181,3184,3196,3199,3205,3208,3218,3222)
                     /site_type="other"
                     /note="Zinc-binding sites [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(3181,3184,3205,3208)
                     /site_type="other"
                     /note="zinc cluster 1 [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(3182,3193,3195,3201,3203)
                     /site_type="active"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(3194,3209,3224,3227)
                     /site_type="active"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(3196,3199,3218,3222)
                     /site_type="other"
                     /note="zinc cluster 2 [ion binding]"
                     /db_xref="CDD:239074"
     CDS             1..3531
                     /gene="DMD"
                     /coded_by="XM_054050425.1:339..10934"
                     /db_xref="GeneID:104057367"
ORIGIN      
        1 mknimaglqq tnsekillsw vrqstrnypq vnvinftssw sdglafnall hshrpdlfdw
       61 nvvasqqspv qrldhafnia rkhlgiekll dpedvatacp dkksilmyvt slfqvlpqqv
      121 tmeairevem lprhtrvare eqiqvhhqql fsqeitvnvp qrpspspkqr fksyaftkvt
      181 htspdqkrrq vppqfletve ektfstvrmw semdlenyqt aleevltwll saedalqaqg
      241 disndvevvk eqfhthegfm meltahqgrv gnvlqagsql lasgklsdde eneiqeqmnl
      301 lnsrweslrv asmekqsnlh kilmdlqnqq laqladwltk teqrtkkidl eplgpdledl
      361 khqveehkaf qedleqeqvk vnslthmvvv vdensgdkat aaleeqlqhf gnrwaaicrw
      421 tedrwillqd ilrkwqhfae eqclfdawlt ekedavsqih ttgfkdqnem lanlrklail
      481 kgdlemkrqm mgklkslsqd llvavknkav aqklesrlen fsqrwdslvq kvertseqis
      541 qpvtttqtsl tqttvmetvt mvttreqilv khakeelppp pphkkrqllv dseirkrfds
      601 dttelhswmt rseavlqspe faiyrkegnl sdlrervnai qrekpekyrk lqdasrsaea
      661 lveqmvnegl nadnirqase qlksrwiefc qllservawl eyqnniidfy sqlrqleqta
      721 iiaenwlkaq ptpatdpaiv kaqlekckde iirmstlqpq ierlkarsqv lkekeqgpvf
      781 vdadlaafts hfkqiladme arekqlqsif dslpparyke tistilgwiq qsetklstpq
      841 vavaeyeime qrlrelkalq nslqeqqkgl nylsttvedl srkapaevsq rcrtetevif
      901 gqwkklsaql vehcqkiedl mtklqrfqnd tktlkkwmae vdvflkeewp algdsealek
      961 qleqctalvn diqtiqpsln svnevgkkmk seaepefasr iekelkelnv qwehicqqay
     1021 akkaalkggl dktvslrkdl semhewitqa eeeylerdfe yktpdelqra veelkrakee
     1081 amqkevkvkl itdsvnnfia kappaaheal kkelddlits yqrlcsrlng kcktleevwa
     1141 cwrellsyld aenkwlneie lklkateniq ggaeeisesl dslerlmrhp ednrnqirel
     1201 aqtltdggil delineklek fntrweelqq eavrrqksle qsiqsaqetd ktlrliqesl
     1261 avidkqltay isdrvdaaqv pqeaqkiqse ltsheislee mkkrnrgkda akrvlsqidv
     1321 aqkklqdvsm kfrlfqkpan feqrlqeckr ildevklqvp kmetksveqe lvqsqldhcm
     1381 klyktlsevk sevetviktg rqivqkqqte npkelderlt alklqyndlg akvtekkqel
     1441 ekclklsrkl rkeinavtew laatdaeltk rstvqgmpsn ldaeiawgka trkeiekrqv
     1501 hlksisdlge nlktvlkgke slvedklsll nsnwiavtsr aeewfnllle yqklmdafdq
     1561 nvanvttwmy raeilldesd kqkpqqkeei lkrlkaelnd mhpkvdfvrd qavdlmtnrg
     1621 dhcrkviepk lselnqrfaa isqriksgkp ftplkeleqf dfdiqkmlep leveiqqgvn
     1681 lkeedfnkdm sedestvkel lqrgdmlqkr itderkreei kikqqllqtk hnvlkdlrsq
     1741 rrkkaleish qwyqykrqad dlmtwlddie kklaslpdhk deqklkeidg elqkkkedln
     1801 avhrqadrls kdgaakavep tliqlskrwq dfeskfaqfr rlnyaqiqtv hedtafvmte
     1861 tvtvetthvp stylaeilhl lqalsevegr lnspvlqakd yedlfkqeec lksikdslgr
     1921 ltgdidiihn kkisalqsai pkeaasiqek ltqlnfqwek vnkmyrdrqa rfdkslekwq
     1981 lfhsdmksfn hwlteteekl araqveagdv ghaktnqflq elqdgigrqq tvvktlnvtg
     2041 eeiieqsstt dakvlkeqle slntrwqeic rqlvekkkrl eeeknilsgf qedldkltlw
     2101 leeadsivci pldpgnedql rdclnkvklr veelpphkgi lkrlnetggi algsaslnpd
     2161 kkhklertlk eanhrllkvs kdlpekqkqi eillkdfiel dqqlnqvilw vtpvknqlel
     2221 ynkvgqpgaf diketeaavq akepnveevl skgchlykek pathpvkkkl ealdadwkai
     2281 hlllqqlkek pplgafglvp sgvltsgetv avdtqtrvtk etttfkpemp ssvllevpal
     2341 adfnkawael tdwlsrldre iksqrvivgd lddindmiik qkailqdleq rrpqldelit
     2401 aaqnlknkts nqeartiitd riekiqsqwd evhghlqnrr qqlhemlkds tqwleakrea
     2461 eqvleqakak leswkeisyt vealkkqnte lkqftkeirq wqinvdvand malkllrdys
     2521 addtrkvelm tdninatwaa inkrvcerea elesalrmlq qfyldlekfl awlteaetta
     2581 nvlqdathke kiledaktvr elmkqwqelq aeidvhtdif hnldengqki lrslegseda
     2641 tllqrrldnm nlrwselrkk slnirshlea stdqwkrlhl slqellawlq lkedelkqqa
     2701 piggdlptvq kqndihrtfk relktkepvi rsaletvrif sveqpvegle klypeprels
     2761 peersqnvtk llqrqadevr newdklnlqs adwqkkidda lerlqglqda mdeldlklrq
     2821 aevfkaswqp vgdllidslq dhlekvkvyr aemiplkekv hqvnelahrf tpsdiqlsqy
     2881 nlscvedlnt rwkvlqvaid erirqlheah rdfgptsqhf lttsvqgpwe raispnkvpy
     2941 yinhetqttc wdhpkmtely qsladlnnvr fsayrtamkl rrlqkalcld llslsaacda
     3001 ldqhnlkqnd qpmdilqiin clttiydrle qdhnnlvnvp lcvdmclnwl lnvydtgrtg
     3061 rirvlsfktg vvslckahle dkyrylfkqv asstgfcdqr rlglllhdsi qiprqlgeva
     3121 sfggsnieps vrscfqfann kpeieaalfl dwmrlepqsm vwlpvlhrva aaetakhqak
     3181 cnickecpii gfryrslkhf nydicqscff sgrvakghkm hypmveyctp ttsgedvrdf
     3241 akvlknkfrt kryfakhprm gylpvqtvle gdnmetpvtl infwpvdsal aementngsy
     3301 lndsispnes iddehlliqh ycqslnqesp lsqprspaqi lisleseerg eleriladle
     3361 eenrnlqaey drlkqqhdhk glsplpsppe mmpvspqspr daeliaeakl lrqhkgrlea
     3421 rmqiledhnk qlesqlhrlr qlleqpqada kvngttlssp stslqrsdss qpmllrvvgs
     3481 qtsetmgede llsppqdtst gleevmeqln nsfpssrgrn apgkpvreat m
//
LOCUS       XP_053906410            3531 aa            linear   VRT 09-MAR-2023
DEFINITION  dystrophin isoform X9 [Cuculus canorus].
ACCESSION   XP_053906410
VERSION     XP_053906410.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050435.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3531
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3531
                     /product="dystrophin isoform X9"
                     /calculated_mol_wt=408135
     Region          13..123
                     /region_name="CH_DMD_rpt2"
                     /note="second calponin homology (CH) domain found in
                     dystrophin and similar proteins; cd21233"
                     /db_xref="CDD:409082"
     Site            order(13,17,68,70..71,74..75,77,86..94,101,103..104,
                     106..107,110..111,114)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409082"
     Site            order(16..17,87..91,94,97,99..104,107,110..111,113..114,
                     118..123)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:409082"
     Region          174..392
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            282..287
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          394..614
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            505..510
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          557..768
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            663..668
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          777..986
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            order(880..881,883..886)
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          883..1097
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            989..994
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          996..1203
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1098..1103
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1102..1308
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1202..1207
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1301..1510
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1403..1408
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1513..1609
                     /region_name="Spectrin"
                     /note="Spectrin repeat; pfam00435"
                     /db_xref="CDD:395348"
     Site            1607..1612
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1642..1801
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1709..1714
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1938..2151
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2044..2049
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2300..2516
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2406..2411
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2519..2761
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2631..2636
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2763..>2873
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2869..2873
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2887..2916
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(2900,2911)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          2953..3114
                     /region_name="EFh_DMD"
                     /note="EF-hand-like motif found in dystrophin; cd16246"
                     /db_xref="CDD:320004"
     Site            order(2953..2954,2956..2957,2975,2979,2983,2985..2986,
                     2989,3000..3006,3008..3009,3012,3018,3031,3072..3073,3075)
                     /site_type="other"
                     /note="Domain interface"
                     /db_xref="CDD:320004"
     Region          2953..2992
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          2999..3033
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Site            3016..3018
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:320004"
     Region          3039..3075
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          3088..3114
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          3139..3187
                     /region_name="ZZ_dystrophin"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     dystrophin and dystrobrevin. The ZZ motif coordinates two
                     zinc ions and most likely participates in ligand binding
                     or molecular scaffolding. Dystrophin attaches actin
                     filaments to an integral membrane...; cd02334"
                     /db_xref="CDD:239074"
     Site            order(3141,3144,3156,3159,3165,3168,3178,3182)
                     /site_type="other"
                     /note="Zinc-binding sites [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(3141,3144,3165,3168)
                     /site_type="other"
                     /note="zinc cluster 1 [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(3142,3153,3155,3161,3163)
                     /site_type="active"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(3154,3169,3184,3187)
                     /site_type="active"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(3156,3159,3178,3182)
                     /site_type="other"
                     /note="zinc cluster 2 [ion binding]"
                     /db_xref="CDD:239074"
     CDS             1..3531
                     /gene="DMD"
                     /coded_by="XM_054050435.1:339..10934"
                     /db_xref="GeneID:104057367"
ORIGIN      
        1 mknimaglqq tnsekillsw vrqstrnypq vnvinftssw sdglafnall hshrpdlfdw
       61 nvvasqqspv qrldhafnia rkhlgiekll dpedvatacp dkksilmyvt slfqvlpqqv
      121 tmeairevem lprhtrvare eqiqvhhqql fsqefletve ektfstvrmw semdlenyqt
      181 aleevltwll saedalqaqg disndvevvk eqfhthegfm meltahqgrv gnvlqagsql
      241 lasgklsdde eneiqeqmnl lnsrweslrv asmekqsnlh kilmdlqnqq laqladwltk
      301 teqrtkkidl eplgpdledl khqveehkaf qedleqeqvk vnslthmvvv vdensgdkat
      361 aaleeqlqhf gnrwaaicrw tedrwillqd ilrkwqhfae eqclfdawlt ekedavsqih
      421 ttgfkdqnem lanlrklail kgdlemkrqm mgklkslsqd llvavknkav aqklesrlen
      481 fsqrwdslvq kvertseqis qpvtttqtsl tqttvmetvt mvttreqilv khakeelppp
      541 pphkkrqllv dseirkrfds dttelhswmt rseavlqspe faiyrkegnl sdlrervnai
      601 qrekpekyrk lqdasrsaea lveqmvnegl nadnirqase qlksrwiefc qllservawl
      661 eyqnniidfy sqlrqleqta iiaenwlkaq ptpatdpaiv kaqlekckde iirmstlqpq
      721 ierlkarsqv lkekeqgpvf vdadlaafts hfkqiladme arekqlqsif dslpparyke
      781 tistilgwiq qsetklstpq vavaeyeime qrlrelkalq nslqeqqkgl nylsttvedl
      841 srkapaevsq rcrtetevif gqwkklsaql vehcqkiedl mtklqrfqnd tktlkkwmae
      901 vdvflkeewp algdsealek qleqctalvn diqtiqpsln svnevgkkmk seaepefasr
      961 iekelkelnv qwehicqqay akkaalkggl dktvslrkdl semhewitqa eeeylerdfe
     1021 yktpdelqra veelkrakee amqkevkvkl itdsvnnfia kappaaheal kkelddlits
     1081 yqrlcsrlng kcktleevwa cwrellsyld aenkwlneie lklkateniq ggaeeisesl
     1141 dslerlmrhp ednrnqirel aqtltdggil delineklek fntrweelqq eavrrqksle
     1201 qsiqsaqetd ktlrliqesl avidkqltay isdrvdaaqv pqeaqkiqse ltsheislee
     1261 mkkrnrgkda akrvlsqidv aqkklqdvsm kfrlfqkpan feqrlqeckr ildevklqvp
     1321 kmetksveqe lvqsqldhcm klyktlsevk sevetviktg rqivqkqqte npkelderlt
     1381 alklqyndlg akvtekkqel ekclklsrkl rkeinavtew laatdaeltk rstvqgmpsn
     1441 ldaeiawgka trkeiekrqv hlksisdlge nlktvlkgke slvedklsll nsnwiavtsr
     1501 aeewfnllle yqklmdafdq nvanvttwmy raeilldesd kqkpqqkeei lkrlkaelnd
     1561 mhpkvdfvrd qavdlmtnrg dhcrkviepk lselnqrfaa isqriksgkp ftplkeleqf
     1621 dfdiqkmlep leveiqqgvn lkeedfnkdm sedestvkel lqrgdmlqkr itderkreei
     1681 kikqqllqtk hnvlkdlrsq rrkkaleish qwyqykrqad dlmtwlddie kklaslpdhk
     1741 deqklkeidg elqkkkedln avhrqadrls kdgaakavep tliqlskrwq dfeskfaqfr
     1801 rlnyaqiqtv hedtafvmte tvtvetthvp stylaeilhl lqalsevegr lnspvlqakd
     1861 yedlfkqeec lksikdslgr ltgdidiihn kkisalqsai pkeaasiqek ltqlnfqwek
     1921 vnkmyrdrqa rfdkslekwq lfhsdmksfn hwlteteekl araqveagdv ghaktnqflq
     1981 elqdgigrqq tvvktlnvtg eeiieqsstt dakvlkeqle slntrwqeic rqlvekkkrl
     2041 eeeknilsgf qedldkltlw leeadsivci pldpgnedql rdclnkvklr veelpphkgi
     2101 lkrlnetggi algsaslnpd kkhklertlk eanhrllkvs kdlpekqkqi eillkdfiel
     2161 dqqlnqvilw vtpvknqlel ynkvgqpgaf diketeaavq akepnveevl skgchlykek
     2221 pathpvkkkl ealdadwkai hlllqqlkek pplgafglvp sgvltsgetv avdtqtrvtk
     2281 etttfkpemp ssvllevpal adfnkawael tdwlsrldre iksqrvivgd lddindmiik
     2341 qkailqdleq rrpqldelit aaqnlknkts nqeartiitd riekiqsqwd evhghlqnrr
     2401 qqlhemlkds tqwleakrea eqvleqakak leswkeisyt vealkkqnte lkqftkeirq
     2461 wqinvdvand malkllrdys addtrkvelm tdninatwaa inkrvcerea elesalrmlq
     2521 qfyldlekfl awlteaetta nvlqdathke kiledaktvr elmkqwqelq aeidvhtdif
     2581 hnldengqki lrslegseda tllqrrldnm nlrwselrkk slnirshlea stdqwkrlhl
     2641 slqellawlq lkedelkqqa piggdlptvq kqndihrtfk relktkepvi rsaletvrif
     2701 sveqpvegle klypeprels peersqnvtk llqrqadevr newdklnlqs adwqkkidda
     2761 lerlqglqda mdeldlklrq aevfkaswqp vgdllidslq dhlekvkvyr aemiplkekv
     2821 hqvnelahrf tpsdiqlsqy nlscvedlnt rwkvlqvaid erirqlheah rdfgptsqhf
     2881 lttsvqgpwe raispnkvpy yinhetqttc wdhpkmtely qsladlnnvr fsayrtamkl
     2941 rrlqkalcld llslsaacda ldqhnlkqnd qpmdilqiin clttiydrle qdhnnlvnvp
     3001 lcvdmclnwl lnvydtgrtg rirvlsfktg vvslckahle dkyrylfkqv asstgfcdqr
     3061 rlglllhdsi qiprqlgeva sfggsnieps vrscfqfann kpeieaalfl dwmrlepqsm
     3121 vwlpvlhrva aaetakhqak cnickecpii gfryrslkhf nydicqscff sgrvakghkm
     3181 hypmveyctp ttsgedvrdf akvlknkfrt kryfakhprm gylpvqtvle gdnmetpvtl
     3241 infwpvdsap asspqlshdd thsriehyas rlaementng sylndsispn esiddehlli
     3301 qhycqslnqe splsqprspa qilislesee rgelerilad leeenrnlqa eydrlkqqhd
     3361 hkglsplpsp pemmpvspqs prdaeliaea kllrqhkgrl earmqiledh nkqlesqlhr
     3421 lrqlleqpqa dakvngttls spstslqrsd ssqpmllrvv gsqtsetmge dellsppqdt
     3481 stgleevmeq lnnsfpssrg hnvgslfhma ddlgrametl vtvmtddkvl e
//
LOCUS       XP_053906419            3528 aa            linear   VRT 09-MAR-2023
DEFINITION  dystrophin isoform X10 [Cuculus canorus].
ACCESSION   XP_053906419
VERSION     XP_053906419.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050444.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3528
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3528
                     /product="dystrophin isoform X10"
                     /calculated_mol_wt=407580
     Region          13..123
                     /region_name="CH_DMD_rpt2"
                     /note="second calponin homology (CH) domain found in
                     dystrophin and similar proteins; cd21233"
                     /db_xref="CDD:409082"
     Site            order(13,17,68,70..71,74..75,77,86..94,101,103..104,
                     106..107,110..111,114)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409082"
     Site            order(16..17,87..91,94,97,99..104,107,110..111,113..114,
                     118..123)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:409082"
     Region          214..432
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            322..327
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          434..654
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            545..550
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          597..808
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            703..708
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          817..1026
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            order(920..921,923..926)
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          923..1137
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1029..1034
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1036..1243
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1138..1143
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1142..1348
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1242..1247
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1341..1548
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1443..1448
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1639..1798
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            1706..1711
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          1935..2148
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2040..2045
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2297..2513
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2403..2408
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2516..2758
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2628..2633
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2760..>2870
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            2866..2870
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          2884..2913
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(2897,2908)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          2950..3111
                     /region_name="EFh_DMD"
                     /note="EF-hand-like motif found in dystrophin; cd16246"
                     /db_xref="CDD:320004"
     Site            order(2950..2951,2953..2954,2972,2976,2980,2982..2983,
                     2986,2997..3003,3005..3006,3009,3015,3028,3069..3070,3072)
                     /site_type="other"
                     /note="Domain interface"
                     /db_xref="CDD:320004"
     Region          2950..2989
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          2996..3030
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Site            3013..3015
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:320004"
     Region          3036..3072
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          3085..3111
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          3136..3184
                     /region_name="ZZ_dystrophin"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     dystrophin and dystrobrevin. The ZZ motif coordinates two
                     zinc ions and most likely participates in ligand binding
                     or molecular scaffolding. Dystrophin attaches actin
                     filaments to an integral membrane...; cd02334"
                     /db_xref="CDD:239074"
     Site            order(3138,3141,3153,3156,3162,3165,3175,3179)
                     /site_type="other"
                     /note="Zinc-binding sites [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(3138,3141,3162,3165)
                     /site_type="other"
                     /note="zinc cluster 1 [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(3139,3150,3152,3158,3160)
                     /site_type="active"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(3151,3166,3181,3184)
                     /site_type="active"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(3153,3156,3175,3179)
                     /site_type="other"
                     /note="zinc cluster 2 [ion binding]"
                     /db_xref="CDD:239074"
     CDS             1..3528
                     /gene="DMD"
                     /coded_by="XM_054050444.1:339..10925"
                     /db_xref="GeneID:104057367"
ORIGIN      
        1 mknimaglqq tnsekillsw vrqstrnypq vnvinftssw sdglafnall hshrpdlfdw
       61 nvvasqqspv qrldhafnia rkhlgiekll dpedvatacp dkksilmyvt slfqvlpqqv
      121 tmeairevem lprhtrvare eqiqvhhqql fsqeitvnvp qrpspspkqr fksyaftkvt
      181 htspdqkrrq vppqfletve ektfstvrmw semdlenyqt aleevltwll saedalqaqg
      241 disndvevvk eqfhthegfm meltahqgrv gnvlqagsql lasgklsdde eneiqeqmnl
      301 lnsrweslrv asmekqsnlh kilmdlqnqq laqladwltk teqrtkkidl eplgpdledl
      361 khqveehkaf qedleqeqvk vnslthmvvv vdensgdkat aaleeqlqhf gnrwaaicrw
      421 tedrwillqd ilrkwqhfae eqclfdawlt ekedavsqih ttgfkdqnem lanlrklail
      481 kgdlemkrqm mgklkslsqd llvavknkav aqklesrlen fsqrwdslvq kvertseqis
      541 qpvtttqtsl tqttvmetvt mvttreqilv khakeelppp pphkkrqllv dseirkrfds
      601 dttelhswmt rseavlqspe faiyrkegnl sdlrervnai qrekpekyrk lqdasrsaea
      661 lveqmvnegl nadnirqase qlksrwiefc qllservawl eyqnniidfy sqlrqleqta
      721 iiaenwlkaq ptpatdpaiv kaqlekckde iirmstlqpq ierlkarsqv lkekeqgpvf
      781 vdadlaafts hfkqiladme arekqlqsif dslpparyke tistilgwiq qsetklstpq
      841 vavaeyeime qrlrelkalq nslqeqqkgl nylsttvedl srkapaevsq rcrtetevif
      901 gqwkklsaql vehcqkiedl mtklqrfqnd tktlkkwmae vdvflkeewp algdsealek
      961 qleqctalvn diqtiqpsln svnevgkkmk seaepefasr iekelkelnv qwehicqqay
     1021 akkaalkggl dktvslrkdl semhewitqa eeeylerdfe yktpdelqra veelkrakee
     1081 amqkevkvkl itdsvnnfia kappaaheal kkelddlits yqrlcsrlng kcktleevwa
     1141 cwrellsyld aenkwlneie lklkateniq ggaeeisesl dslerlmrhp ednrnqirel
     1201 aqtltdggil delineklek fntrweelqq eavrrqksle qsiqsaqetd ktlrliqesl
     1261 avidkqltay isdrvdaaqv pqeaqkiqse ltsheislee mkkrnrgkda akrvlsqidv
     1321 aqkklqdvsm kfrlfqkpan feqrlqeckr ildevklqvp kmetksveqe lvqsqldhcm
     1381 klyktlsevk sevetviktg rqivqkqqte npkelderlt alklqyndlg akvtekkqel
     1441 ekclklsrkl rkeinavtew laatdaeltk rstvqgmpsn ldaeiawgka trkeiekrqv
     1501 hlksisdlge nlktvlkgke slvedklsll nsnwiavtsr aeewfnlllr lkaelndmhp
     1561 kvdfvrdqav dlmtnrgdhc rkviepklse lnqrfaaisq riksgkpftp lkeleqfdfd
     1621 iqkmleplev eiqqgvnlke edfnkdmsed estvkellqr gdmlqkritd erkreeikik
     1681 qqllqtkhnv lkdlrsqrrk kaleishqwy qykrqaddlm twlddiekkl aslpdhkdeq
     1741 klkeidgelq kkkedlnavh rqadrlskdg aakaveptli qlskrwqdfe skfaqfrrln
     1801 yaqiqtvhed tafvmtetvt vetthvpsty laeilhllqa lsevegrlns pvlqakdyed
     1861 lfkqeeclks ikdslgrltg didiihnkki salqsaipke aasiqekltq lnfqwekvnk
     1921 myrdrqarfd kslekwqlfh sdmksfnhwl teteeklara qveagdvgha ktnqflqelq
     1981 dgigrqqtvv ktlnvtgeei ieqssttdak vlkeqlesln trwqeicrql vekkkrleee
     2041 knilsgfqed ldkltlwlee adsivcipld pgnedqlrdc lnkvklrvee lpphkgilkr
     2101 lnetggialg saslnpdkkh klertlkean hrllkvskdl pekqkqieil lkdfieldqq
     2161 lnqvilwvtp vknqlelynk vgqpgafdik eteaavqake pnveevlskg chlykekpat
     2221 hpvkkkleal dadwkaihll lqqlkekppl gafglvpsgv ltsgetvavd tqtrvtkett
     2281 tfkpempssv llevpaladf nkawaeltdw lsrldreiks qrvivgdldd indmiikqka
     2341 ilqdleqrrp qldelitaaq nlknktsnqe artiitdrie kiqsqwdevh ghlqnrrqql
     2401 hemlkdstqw leakreaeqv leqakakles wkeisytvea lkkqntelkq ftkeirqwqi
     2461 nvdvandmal kllrdysadd trkvelmtdn inatwaaink rvcereaele salrmlqqfy
     2521 ldlekflawl teaettanvl qdathkekil edaktvrelm kqwqelqaei dvhtdifhnl
     2581 dengqkilrs legsedatll qrrldnmnlr wselrkksln irshleastd qwkrlhlslq
     2641 ellawlqlke delkqqapig gdlptvqkqn dihrtfkrel ktkepvirsa letvrifsve
     2701 qpveglekly peprelspee rsqnvtkllq rqadevrnew dklnlqsadw qkkiddaler
     2761 lqglqdamde ldlklrqaev fkaswqpvgd llidslqdhl ekvkvyraem iplkekvhqv
     2821 nelahrftps diqlsqynls cvedlntrwk vlqvaideri rqlheahrdf gptsqhfltt
     2881 svqgpwerai spnkvpyyin hetqttcwdh pkmtelyqsl adlnnvrfsa yrtamklrrl
     2941 qkalcldlls lsaacdaldq hnlkqndqpm dilqiinclt tiydrleqdh nnlvnvplcv
     3001 dmclnwllnv ydtgrtgrir vlsfktgvvs lckahledky rylfkqvass tgfcdqrrlg
     3061 lllhdsiqip rqlgevasfg gsniepsvrs cfqfannkpe ieaalfldwm rlepqsmvwl
     3121 pvlhrvaaae takhqakcni ckecpiigfr yrslkhfnyd icqscffsgr vakghkmhyp
     3181 mveyctptts gedvrdfakv lknkfrtkry fakhprmgyl pvqtvlegdn metpvtlinf
     3241 wpvdsapass pqlshddths riehyasrla ementngsyl ndsispnesi ddehlliqhy
     3301 cqslnqespl sqprspaqil isleseerge leriladlee enrnlqaeyd rlkqqhdhkg
     3361 lsplpsppem mpvspqsprd aeliaeakll rqhkgrlear mqiledhnkq lesqlhrlrq
     3421 lleqpqadak vngttlssps tslqrsdssq pmllrvvgsq tsetmgedel lsppqdtstg
     3481 leevmeqlnn sfpssrghnv gslfhmaddl grametlvtv mtddkvle
//
LOCUS       XP_053906426             988 aa            linear   VRT 09-MAR-2023
DEFINITION  dystrophin isoform X11 [Cuculus canorus].
ACCESSION   XP_053906426
VERSION     XP_053906426.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050451.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..988
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..988
                     /product="dystrophin isoform X11"
                     /calculated_mol_wt=113632
     Region          24..218
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            88..93
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          220..>330
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            326..330
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          344..373
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(357,368)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          410..571
                     /region_name="EFh_DMD"
                     /note="EF-hand-like motif found in dystrophin; cd16246"
                     /db_xref="CDD:320004"
     Site            order(410..411,413..414,432,436,440,442..443,446,457..463,
                     465..466,469,475,488,529..530,532)
                     /site_type="other"
                     /note="Domain interface"
                     /db_xref="CDD:320004"
     Region          410..449
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          456..490
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Site            473..475
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:320004"
     Region          496..532
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          545..571
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          596..644
                     /region_name="ZZ_dystrophin"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     dystrophin and dystrobrevin. The ZZ motif coordinates two
                     zinc ions and most likely participates in ligand binding
                     or molecular scaffolding. Dystrophin attaches actin
                     filaments to an integral membrane...; cd02334"
                     /db_xref="CDD:239074"
     Site            order(598,601,613,616,622,625,635,639)
                     /site_type="other"
                     /note="Zinc-binding sites [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(598,601,622,625)
                     /site_type="other"
                     /note="zinc cluster 1 [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(599,610,612,618,620)
                     /site_type="active"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(611,626,641,644)
                     /site_type="active"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(613,616,635,639)
                     /site_type="other"
                     /note="zinc cluster 2 [ion binding]"
                     /db_xref="CDD:239074"
     Region          <780..>884
                     /region_name="GumC"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; COG3206"
                     /db_xref="CDD:442439"
     CDS             1..988
                     /gene="DMD"
                     /coded_by="XM_054050451.1:45..3011"
                     /db_xref="GeneID:104057367"
ORIGIN      
        1 mqpdrccspq lklkmlhrkt yhvkelqaei dvhtdifhnl dengqkilrs legsedatll
       61 qrrldnmnlr wselrkksln irshleastd qwkrlhlslq ellawlqlke delkqqapig
      121 gdlptvqkqn dihrtfkrel ktkepvirsa letvrifsve qpveglekly peprelspee
      181 rsqnvtkllq rqadevrnew dklnlqsadw qkkiddaler lqglqdamde ldlklrqaev
      241 fkaswqpvgd llidslqdhl ekvkvyraem iplkekvhqv nelahrftps diqlsqynls
      301 cvedlntrwk vlqvaideri rqlheahrdf gptsqhfltt svqgpwerai spnkvpyyin
      361 hetqttcwdh pkmtelyqsl adlnnvrfsa yrtamklrrl qkalcldlls lsaacdaldq
      421 hnlkqndqpm dilqiinclt tiydrleqdh nnlvnvplcv dmclnwllnv ydtgrtgrir
      481 vlsfktgvvs lckahledky rylfkqvass tgfcdqrrlg lllhdsiqip rqlgevasfg
      541 gsniepsvrs cfqfannkpe ieaalfldwm rlepqsmvwl pvlhrvaaae takhqakcni
      601 ckecpiigfr yrslkhfnyd icqscffsgr vakghkmhyp mveyctptts gedvrdfakv
      661 lknkfrtkry fakhprmgyl pvqtvlegdn metpvtlinf wpvdsapass pqlshddths
      721 riehyasrla ementngsyl ndsispnesi ddehlliqhy cqslnqespl sqprspaqil
      781 isleseerge leriladlee enrnlqaeyd rlkqqhdhkg lsplpsppem mpvspqsprd
      841 aeliaeakll rqhkgrlear mqiledhnkq lesqlhrlrq lleqpqadak vngttlssps
      901 tslqrsdssq pmllrvvgsq tsetmgedel lsppqdtstg leevmeqlnn sfpssrghnv
      961 gslfhmaddl grametlvtv mtddkvle
//
LOCUS       XP_053906431             970 aa            linear   VRT 09-MAR-2023
DEFINITION  dystrophin isoform X12 [Cuculus canorus].
ACCESSION   XP_053906431
VERSION     XP_053906431.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050456.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..970
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..970
                     /product="dystrophin isoform X12"
                     /calculated_mol_wt=111612
     Region          24..218
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            88..93
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          220..>330
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            326..330
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          344..373
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(357,368)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          410..571
                     /region_name="EFh_DMD"
                     /note="EF-hand-like motif found in dystrophin; cd16246"
                     /db_xref="CDD:320004"
     Site            order(410..411,413..414,432,436,440,442..443,446,457..463,
                     465..466,469,475,488,529..530,532)
                     /site_type="other"
                     /note="Domain interface"
                     /db_xref="CDD:320004"
     Region          410..449
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          456..490
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Site            473..475
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:320004"
     Region          496..532
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          545..571
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          596..644
                     /region_name="ZZ_dystrophin"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     dystrophin and dystrobrevin. The ZZ motif coordinates two
                     zinc ions and most likely participates in ligand binding
                     or molecular scaffolding. Dystrophin attaches actin
                     filaments to an integral membrane...; cd02334"
                     /db_xref="CDD:239074"
     Site            order(598,601,613,616,622,625,635,639)
                     /site_type="other"
                     /note="Zinc-binding sites [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(598,601,622,625)
                     /site_type="other"
                     /note="zinc cluster 1 [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(599,610,612,618,620)
                     /site_type="active"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(611,626,641,644)
                     /site_type="active"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(613,616,635,639)
                     /site_type="other"
                     /note="zinc cluster 2 [ion binding]"
                     /db_xref="CDD:239074"
     Region          <780..>884
                     /region_name="GumC"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; COG3206"
                     /db_xref="CDD:442439"
     CDS             1..970
                     /gene="DMD"
                     /coded_by="XM_054050456.1:45..2957"
                     /db_xref="GeneID:104057367"
ORIGIN      
        1 mqpdrccspq lklkmlhrkt yhvkelqaei dvhtdifhnl dengqkilrs legsedatll
       61 qrrldnmnlr wselrkksln irshleastd qwkrlhlslq ellawlqlke delkqqapig
      121 gdlptvqkqn dihrtfkrel ktkepvirsa letvrifsve qpveglekly peprelspee
      181 rsqnvtkllq rqadevrnew dklnlqsadw qkkiddaler lqglqdamde ldlklrqaev
      241 fkaswqpvgd llidslqdhl ekvkvyraem iplkekvhqv nelahrftps diqlsqynls
      301 cvedlntrwk vlqvaideri rqlheahrdf gptsqhfltt svqgpwerai spnkvpyyin
      361 hetqttcwdh pkmtelyqsl adlnnvrfsa yrtamklrrl qkalcldlls lsaacdaldq
      421 hnlkqndqpm dilqiinclt tiydrleqdh nnlvnvplcv dmclnwllnv ydtgrtgrir
      481 vlsfktgvvs lckahledky rylfkqvass tgfcdqrrlg lllhdsiqip rqlgevasfg
      541 gsniepsvrs cfqfannkpe ieaalfldwm rlepqsmvwl pvlhrvaaae takhqakcni
      601 ckecpiigfr yrslkhfnyd icqscffsgr vakghkmhyp mveyctptts gedvrdfakv
      661 lknkfrtkry fakhprmgyl pvqtvlegdn metpvtlinf wpvdsapass pqlshddths
      721 riehyasrla ementngsyl ndsispnesi ddehlliqhy cqslnqespl sqprspaqil
      781 isleseerge leriladlee enrnlqaeyd rlkqqhdhkg lsplpsppem mpvspqsprd
      841 aeliaeakll rqhkgrlear mqiledhnkq lesqlhrlrq lleqpqadak vngttlssps
      901 tslqrsdssq pmllrvvgsq tsetmgedel lsppqdtstg leevmeqlnn sfpssrgrna
      961 pgkpvreatm
//
LOCUS       XP_053906439             635 aa            linear   VRT 09-MAR-2023
DEFINITION  dystrophin isoform X13 [Cuculus canorus].
ACCESSION   XP_053906439
VERSION     XP_053906439.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050464.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..635
                     /product="dystrophin isoform X13"
                     /calculated_mol_wt=72155
     Region          57..218
                     /region_name="EFh_DMD"
                     /note="EF-hand-like motif found in dystrophin; cd16246"
                     /db_xref="CDD:320004"
     Site            order(57..58,60..61,79,83,87,89..90,93,104..110,112..113,
                     116,122,135,176..177,179)
                     /site_type="other"
                     /note="Domain interface"
                     /db_xref="CDD:320004"
     Region          57..96
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          103..137
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Site            120..122
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:320004"
     Region          143..179
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          192..218
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          243..291
                     /region_name="ZZ_dystrophin"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     dystrophin and dystrobrevin. The ZZ motif coordinates two
                     zinc ions and most likely participates in ligand binding
                     or molecular scaffolding. Dystrophin attaches actin
                     filaments to an integral membrane...; cd02334"
                     /db_xref="CDD:239074"
     Site            order(245,248,260,263,269,272,282,286)
                     /site_type="other"
                     /note="Zinc-binding sites [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(245,248,269,272)
                     /site_type="other"
                     /note="zinc cluster 1 [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(246,257,259,265,267)
                     /site_type="active"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(258,273,288,291)
                     /site_type="active"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(260,263,282,286)
                     /site_type="other"
                     /note="zinc cluster 2 [ion binding]"
                     /db_xref="CDD:239074"
     Region          <427..>531
                     /region_name="GumC"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; COG3206"
                     /db_xref="CDD:442439"
     CDS             1..635
                     /gene="DMD"
                     /coded_by="XM_054050464.1:75..1982"
                     /db_xref="GeneID:104057367"
ORIGIN      
        1 mreqlkghet qttcwdhpkm telyqsladl nnvrfsayrt amklrrlqka lcldllslsa
       61 acdaldqhnl kqndqpmdil qiinclttiy drleqdhnnl vnvplcvdmc lnwllnvydt
      121 grtgrirvls fktgvvslck ahledkyryl fkqvasstgf cdqrrlglll hdsiqiprql
      181 gevasfggsn iepsvrscfq fannkpeiea alfldwmrle pqsmvwlpvl hrvaaaetak
      241 hqakcnicke cpiigfryrs lkhfnydicq scffsgrvak ghkmhypmve yctpttsged
      301 vrdfakvlkn kfrtkryfak hprmgylpvq tvlegdnmet pvtlinfwpv dsapasspql
      361 shddthsrie hyasrlaeme ntngsylnds ispnesidde hlliqhycqs lnqesplsqp
      421 rspaqilisl eseergeler iladleeenr nlqaeydrlk qqhdhkglsp lpsppemmpv
      481 spqsprdael iaeakllrqh kgrlearmqi ledhnkqles qlhrlrqlle qpqadakvng
      541 ttlsspstsl qrsdssqpml lrvvgsqtse tmgedellsp pqdtstglee vmeqlnnsfp
      601 ssrghnvgsl fhmaddlgra metlvtvmtd dkvle
//
LOCUS       XP_053906448             622 aa            linear   VRT 09-MAR-2023
DEFINITION  dystrophin isoform X14 [Cuculus canorus].
ACCESSION   XP_053906448
VERSION     XP_053906448.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050473.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..622
                     /product="dystrophin isoform X14"
                     /calculated_mol_wt=70715
     Region          57..218
                     /region_name="EFh_DMD"
                     /note="EF-hand-like motif found in dystrophin; cd16246"
                     /db_xref="CDD:320004"
     Site            order(57..58,60..61,79,83,87,89..90,93,104..110,112..113,
                     116,122,135,176..177,179)
                     /site_type="other"
                     /note="Domain interface"
                     /db_xref="CDD:320004"
     Region          57..96
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          103..137
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Site            120..122
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:320004"
     Region          143..179
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          192..218
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          243..291
                     /region_name="ZZ_dystrophin"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     dystrophin and dystrobrevin. The ZZ motif coordinates two
                     zinc ions and most likely participates in ligand binding
                     or molecular scaffolding. Dystrophin attaches actin
                     filaments to an integral membrane...; cd02334"
                     /db_xref="CDD:239074"
     Site            order(245,248,260,263,269,272,282,286)
                     /site_type="other"
                     /note="Zinc-binding sites [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(245,248,269,272)
                     /site_type="other"
                     /note="zinc cluster 1 [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(246,257,259,265,267)
                     /site_type="active"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(258,273,288,291)
                     /site_type="active"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(260,263,282,286)
                     /site_type="other"
                     /note="zinc cluster 2 [ion binding]"
                     /db_xref="CDD:239074"
     Region          <414..>518
                     /region_name="GumC"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; COG3206"
                     /db_xref="CDD:442439"
     CDS             1..622
                     /gene="DMD"
                     /coded_by="XM_054050473.1:75..1943"
                     /db_xref="GeneID:104057367"
ORIGIN      
        1 mreqlkghet qttcwdhpkm telyqsladl nnvrfsayrt amklrrlqka lcldllslsa
       61 acdaldqhnl kqndqpmdil qiinclttiy drleqdhnnl vnvplcvdmc lnwllnvydt
      121 grtgrirvls fktgvvslck ahledkyryl fkqvasstgf cdqrrlglll hdsiqiprql
      181 gevasfggsn iepsvrscfq fannkpeiea alfldwmrle pqsmvwlpvl hrvaaaetak
      241 hqakcnicke cpiigfryrs lkhfnydicq scffsgrvak ghkmhypmve yctpttsged
      301 vrdfakvlkn kfrtkryfak hprmgylpvq tvlegdnmet passpqlshd dthsriehya
      361 srlaementn gsylndsisp nesiddehll iqhycqslnq esplsqprsp aqilislese
      421 ergelerila dleeenrnlq aeydrlkqqh dhkglsplps ppemmpvspq sprdaeliae
      481 akllrqhkgr learmqiled hnkqlesqlh rlrqlleqpq adakvngttl sspstslqrs
      541 dssqpmllrv vgsqtsetmg edellsppqd tstgleevme qlnnsfpssr ghnvgslfhm
      601 addlgramet lvtvmtddkv le
//
LOCUS       XP_053906458             617 aa            linear   VRT 09-MAR-2023
DEFINITION  dystrophin isoform X15 [Cuculus canorus].
ACCESSION   XP_053906458
VERSION     XP_053906458.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050483.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..617
                     /product="dystrophin isoform X15"
                     /calculated_mol_wt=70136
     Region          57..218
                     /region_name="EFh_DMD"
                     /note="EF-hand-like motif found in dystrophin; cd16246"
                     /db_xref="CDD:320004"
     Site            order(57..58,60..61,79,83,87,89..90,93,104..110,112..113,
                     116,122,135,176..177,179)
                     /site_type="other"
                     /note="Domain interface"
                     /db_xref="CDD:320004"
     Region          57..96
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          103..137
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Site            120..122
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:320004"
     Region          143..179
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          192..218
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          243..291
                     /region_name="ZZ_dystrophin"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     dystrophin and dystrobrevin. The ZZ motif coordinates two
                     zinc ions and most likely participates in ligand binding
                     or molecular scaffolding. Dystrophin attaches actin
                     filaments to an integral membrane...; cd02334"
                     /db_xref="CDD:239074"
     Site            order(245,248,260,263,269,272,282,286)
                     /site_type="other"
                     /note="Zinc-binding sites [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(245,248,269,272)
                     /site_type="other"
                     /note="zinc cluster 1 [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(246,257,259,265,267)
                     /site_type="active"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(258,273,288,291)
                     /site_type="active"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(260,263,282,286)
                     /site_type="other"
                     /note="zinc cluster 2 [ion binding]"
                     /db_xref="CDD:239074"
     Region          <427..>531
                     /region_name="GumC"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; COG3206"
                     /db_xref="CDD:442439"
     CDS             1..617
                     /gene="DMD"
                     /coded_by="XM_054050483.1:75..1928"
                     /db_xref="GeneID:104057367"
ORIGIN      
        1 mreqlkghet qttcwdhpkm telyqsladl nnvrfsayrt amklrrlqka lcldllslsa
       61 acdaldqhnl kqndqpmdil qiinclttiy drleqdhnnl vnvplcvdmc lnwllnvydt
      121 grtgrirvls fktgvvslck ahledkyryl fkqvasstgf cdqrrlglll hdsiqiprql
      181 gevasfggsn iepsvrscfq fannkpeiea alfldwmrle pqsmvwlpvl hrvaaaetak
      241 hqakcnicke cpiigfryrs lkhfnydicq scffsgrvak ghkmhypmve yctpttsged
      301 vrdfakvlkn kfrtkryfak hprmgylpvq tvlegdnmet pvtlinfwpv dsapasspql
      361 shddthsrie hyasrlaeme ntngsylnds ispnesidde hlliqhycqs lnqesplsqp
      421 rspaqilisl eseergeler iladleeenr nlqaeydrlk qqhdhkglsp lpsppemmpv
      481 spqsprdael iaeakllrqh kgrlearmqi ledhnkqles qlhrlrqlle qpqadakvng
      541 ttlsspstsl qrsdssqpml lrvvgsqtse tmgedellsp pqdtstglee vmeqlnnsfp
      601 ssrgrnapgk pvreatm
//
LOCUS       XP_053906467             604 aa            linear   VRT 09-MAR-2023
DEFINITION  dystrophin isoform X16 [Cuculus canorus].
ACCESSION   XP_053906467
VERSION     XP_053906467.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050492.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..604
                     /product="dystrophin isoform X16"
                     /calculated_mol_wt=68695
     Region          57..218
                     /region_name="EFh_DMD"
                     /note="EF-hand-like motif found in dystrophin; cd16246"
                     /db_xref="CDD:320004"
     Site            order(57..58,60..61,79,83,87,89..90,93,104..110,112..113,
                     116,122,135,176..177,179)
                     /site_type="other"
                     /note="Domain interface"
                     /db_xref="CDD:320004"
     Region          57..96
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          103..137
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Site            120..122
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:320004"
     Region          143..179
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          192..218
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320004"
     Region          243..291
                     /region_name="ZZ_dystrophin"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     dystrophin and dystrobrevin. The ZZ motif coordinates two
                     zinc ions and most likely participates in ligand binding
                     or molecular scaffolding. Dystrophin attaches actin
                     filaments to an integral membrane...; cd02334"
                     /db_xref="CDD:239074"
     Site            order(245,248,260,263,269,272,282,286)
                     /site_type="other"
                     /note="Zinc-binding sites [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(245,248,269,272)
                     /site_type="other"
                     /note="zinc cluster 1 [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(246,257,259,265,267)
                     /site_type="active"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(258,273,288,291)
                     /site_type="active"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(260,263,282,286)
                     /site_type="other"
                     /note="zinc cluster 2 [ion binding]"
                     /db_xref="CDD:239074"
     Region          <414..>518
                     /region_name="GumC"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; COG3206"
                     /db_xref="CDD:442439"
     CDS             1..604
                     /gene="DMD"
                     /coded_by="XM_054050492.1:75..1889"
                     /db_xref="GeneID:104057367"
ORIGIN      
        1 mreqlkghet qttcwdhpkm telyqsladl nnvrfsayrt amklrrlqka lcldllslsa
       61 acdaldqhnl kqndqpmdil qiinclttiy drleqdhnnl vnvplcvdmc lnwllnvydt
      121 grtgrirvls fktgvvslck ahledkyryl fkqvasstgf cdqrrlglll hdsiqiprql
      181 gevasfggsn iepsvrscfq fannkpeiea alfldwmrle pqsmvwlpvl hrvaaaetak
      241 hqakcnicke cpiigfryrs lkhfnydicq scffsgrvak ghkmhypmve yctpttsged
      301 vrdfakvlkn kfrtkryfak hprmgylpvq tvlegdnmet passpqlshd dthsriehya
      361 srlaementn gsylndsisp nesiddehll iqhycqslnq esplsqprsp aqilislese
      421 ergelerila dleeenrnlq aeydrlkqqh dhkglsplps ppemmpvspq sprdaeliae
      481 akllrqhkgr learmqiled hnkqlesqlh rlrqlleqpq adakvngttl sspstslqrs
      541 dssqpmllrv vgsqtsetmg edellsppqd tstgleevme qlnnsfpssr grnapgkpvr
      601 eatm
//
LOCUS       XP_053906481             355 aa            linear   VRT 09-MAR-2023
DEFINITION  tRNA (cytosine(34)-C(5))-methyltransferase, mitochondrial [Cuculus
            canorus].
ACCESSION   XP_053906481
VERSION     XP_053906481.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050506.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..355
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..355
                     /product="tRNA (cytosine(34)-C(5))-methyltransferase,
                     mitochondrial"
                     /calculated_mol_wt=39634
     Region          <139..354
                     /region_name="RsmB"
                     /note="16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF
                     family [Translation, ribosomal structure and biogenesis];
                     COG0144"
                     /db_xref="CDD:439914"
     CDS             1..355
                     /gene="NSUN3"
                     /coded_by="XM_054050506.1:53..1120"
                     /db_xref="GeneID:104055969"
ORIGIN      
        1 mrlpraaacl llpppragaa ratgplenet kgklqkqicq vvldhfekqy tvelgdtwas
       61 vrdvltyplc wqyavllnkf sqsaelentl hvkgyhpafq gplpyrpasl ncyirrtpgr
      121 fpaqkhqagk lkeyyllnaa sllpvlalev kdgedvldlc aapggksvam lqcaypgqfh
      181 cneyddlrsr wlnqtiesfi pdplinlitv skldgrqigd lkpelydkvl vdapcsndrs
      241 wlfssdihqa mlrltqrkel cslqfhllrs aikalrpggs lvystctlsk aensdvinri
      301 lnscsnvmpv disemakavs qeftffsgtq qhellvlpek grawgpmyva klkkm
//
LOCUS       XP_009563412             333 aa            linear   VRT 09-MAR-2023
DEFINITION  ephrin-B2 [Cuculus canorus].
ACCESSION   XP_009563412
VERSION     XP_009563412.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565117.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..333
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..333
                     /product="ephrin-B2"
                     /calculated_mol_wt=36679
     Region          31..167
                     /region_name="Ephrin-B_Ectodomain"
                     /note="Ectodomain of Ephrin B; cd10426"
                     /db_xref="CDD:259897"
     Site            order(59,98..100,105,108..109,111..113,115,117,119..125,
                     127)
                     /site_type="other"
                     /note="receptor binding site [polypeptide binding]"
                     /db_xref="CDD:259897"
     CDS             1..333
                     /gene="EFNB2"
                     /coded_by="XM_009565117.2:1041..2042"
                     /db_xref="GeneID:104062975"
ORIGIN      
        1 maarrrdasg wkycwgvamv lcrtalarsi vldpiywnss npkflpgqgl vlypqigdkl
       61 diicpkvdsk tvgqyeyykv ymvdkdqads caikkdntpl lncakpdqdv kftikfqefs
      121 pnlwglefqk nkdyyvists ngslegldnq eggvcqtktm kilmkvgqdp nsaglprhtd
      181 ptkrpeqepg tngkssttsp fvkdhsgsst dgskaghssi lgsevalfag iasgciifiv
      241 iiitlvvlll kyrrrhrkhs pqhtttlsls tlatpkrsgn nngsepsdii iplrtadsvf
      301 cphyekvsgd yghpvyivqe mppqspaniy ykv
//
LOCUS       XP_009566703             564 aa            linear   VRT 09-MAR-2023
DEFINITION  eukaryotic translation initiation factor 3 subunit L isoform X1
            [Cuculus canorus].
ACCESSION   XP_009566703
VERSION     XP_009566703.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568408.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566703.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..564
                     /product="eukaryotic translation initiation factor 3
                     subunit L isoform X1"
                     /calculated_mol_wt=66564
     Region          152..550
                     /region_name="Paf67"
                     /note="RNA polymerase I-associated factor PAF67;
                     pfam10255"
                     /db_xref="CDD:463028"
     CDS             1..564
                     /gene="EIF3L"
                     /coded_by="XM_009568408.2:72..1766"
                     /db_xref="GeneID:104065875"
ORIGIN      
        1 maypgedydn eaaydpysys ndydlhtgdp kqdlayerqy eqqtyqvipe viknfiqyfh
       61 ktvsdlidqk vyelqasrvs sdvidqkvye iqdiyenswt klterffknt pwpeaeaiap
      121 qvgndavfli lykelyyrhi yakvsggptl eqrfesyyny cnlfnyilna dgpaplelpn
      181 qwlwdiidef iyqfqsfsqy rcktakksee eidflrsnpk iwnvhsvlnv lhslvdksni
      241 nrqlevytsg gdpesvagey grhslykmlg yfslvgllrl hsllgdyyqa ikvlenieln
      301 kksmysrvpe cqvttyyyvg faylmmrryq dairvfanil lyiqrtksmf qrttykyemi
      361 nkqneqmhal laialtmypm ridesihlql rekygdkmlr mqkgdaqvye elfsyacpkf
      421 lspvvpnydn vhpnyhkepf lqqlkvfade vqqqaqlsti rsflklyttm pvaklagfld
      481 lteqefriql lvfkhkmknl vwtsgisald gefqsasevd fyidkdmihi adtkvarryg
      541 dffirqihkf eelnrtlkkm gqrp
//
LOCUS       XP_053906525             466 aa            linear   VRT 09-MAR-2023
DEFINITION  eukaryotic translation initiation factor 3 subunit L isoform X2
            [Cuculus canorus].
ACCESSION   XP_053906525
VERSION     XP_053906525.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050550.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..466
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..466
                     /product="eukaryotic translation initiation factor 3
                     subunit L isoform X2"
                     /calculated_mol_wt=54943
     Region          54..452
                     /region_name="Paf67"
                     /note="RNA polymerase I-associated factor PAF67;
                     pfam10255"
                     /db_xref="CDD:463028"
     CDS             1..466
                     /gene="EIF3L"
                     /coded_by="XM_054050550.1:1..1401"
                     /db_xref="GeneID:104065875"
ORIGIN      
        1 mssrpavfpv mlltrrctkf rtsmktdavf lilykelyyr hiyakvsggp tleqrfesyy
       61 nycnlfnyil nadgpaplel pnqwlwdiid efiyqfqsfs qyrcktakks eeeidflrsn
      121 pkiwnvhsvl nvlhslvdks ninrqlevyt sggdpesvag eygrhslykm lgyfslvgll
      181 rlhsllgdyy qaikvlenie lnkksmysrv pecqvttyyy vgfaylmmrr yqdairvfan
      241 illyiqrtks mfqrttykye minkqneqmh allaialtmy pmridesihl qlrekygdkm
      301 lrmqkgdaqv yeelfsyacp kflspvvpny dnvhpnyhke pflqqlkvfa devqqqaqls
      361 tirsflklyt tmpvaklagf ldlteqefri qllvfkhkmk nlvwtsgisa ldgefqsase
      421 vdfyidkdmi hiadtkvarr ygdffirqih kfeelnrtlk kmgqrp
//
LOCUS       XP_009559048            1923 aa            linear   VRT 09-MAR-2023
DEFINITION  unconventional myosin-XVI isoform X1 [Cuculus canorus].
ACCESSION   XP_009559048
VERSION     XP_009559048.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560753.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009559048.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1923
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1923
                     /product="unconventional myosin-XVI isoform X1"
                     /calculated_mol_wt=214668
     Region          46..331
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(114,116,120..121,124..126,128..129,133,136,145,147,
                     149,153..154,157..159,161..162,166,169,178,180,182,
                     186..187,190,193..194,196..197,201,204)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          114..145
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          147..178
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          180..210
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          243..274
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          276..307
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          437..1155
                     /region_name="MYSc_Myo16"
                     /note="class XVI myosin, motor domain; cd14878"
                     /db_xref="CDD:276844"
     Site            order(464..472,519..526,564..574,800..805)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:276844"
     Site            464..472
                     /site_type="other"
                     /note="purine-binding loop"
                     /db_xref="CDD:276844"
     Site            519..526
                     /site_type="other"
                     /note="P-loop"
                     /db_xref="CDD:276844"
     Site            564..574
                     /site_type="other"
                     /note="switch I region"
                     /db_xref="CDD:276844"
     Site            800..805
                     /site_type="other"
                     /note="switch II region"
                     /db_xref="CDD:276844"
     Site            829..852
                     /site_type="other"
                     /note="relay loop"
                     /db_xref="CDD:276844"
     Site            1088..1097
                     /site_type="other"
                     /note="SH1 helix"
                     /db_xref="CDD:276844"
     Site            order(1100..1118,1123..1155)
                     /site_type="other"
                     /note="converter subdomain"
                     /db_xref="CDD:276844"
     Region          1243..1628
                     /region_name="NYAP_N"
                     /note="Neuronal tyrosine-phosphorylated
                     phosphoinositide-3-kinase adapter; pfam15439"
                     /db_xref="CDD:464717"
     Region          1699..1874
                     /region_name="NYAP_C"
                     /note="Neuronal tyrosine-phosphorylated
                     phosphoinositide-3-kinase adapter; pfam15452"
                     /db_xref="CDD:464724"
     CDS             1..1923
                     /gene="MYO16"
                     /coded_by="XM_009560753.2:400..6171"
                     /db_xref="GeneID:104059151"
ORIGIN      
        1 mshyhfikcc cfqlcnvfrs hemeieqcll eslplgqrqr lvkrmrcdqi kayyerekaf
       61 qkredyvkkl khgknhrvhf nlpdmvqdai krhddkevlr llkdgadphm lvssggsllh
      121 lcarydnafa aeilidrgvn inhqdedfwt smhvacacdn pdivllllla ganvllqdvn
      181 gnialdyaie gtesssillm yleengveln slrqmkiqrp vtmltdvrql issggsvnqk
      241 ndegvtllhv acangyrnva slildhgadl navdnqywtp lhlaakygqt nlvklllmhw
      301 anpnllncnn ekpsdvaase fieemllkae ivweekmkdp lavpalsqee pyeeiihdlp
      361 tisnklnpla lpiakqdsll ekdtmfkdaa kglckqqsqd stsenvaant ttkleqiklm
      421 ppapnddlas lseltdssll yeiqkrfnnn qiytyigdil llvnpfkelp iystmvtqly
      481 lsnsgklcss lpphifscae rayhmlfqeq rpqcfilsge sgsgkteack qivkhlacra
      541 sssrnifeik mkhvncilea fghaktplny fsscfikyfe lqfcektktl vaarlytyml
      601 eksrvimqpl nqsnfhvfyl mmdglsaeek ytlylsnfsa hrylsqtile dttltgnpqn
      661 reklamlkqa lgamgfnsle venlfvilsa ilhlgdirft altdtetafv sdlqlleqva
      721 wmlqvspdel asaltsdvqy fkgdmivrrh tieiaefyrd llakslygrl fsflvntinc
      781 cfqnqdetgs dqvfeigvld ifgfeefqkn tfeqlcvnmt nekihqyine vlflqeqaec
      841 vqegvametm yspgnhtaal nfffqkpsgf lsmldeesqs iwsveqslsk rvqsyldtld
      901 tntvysstkd gngnlapkdq gstftvmhya grvtyeiaga ieknkdslsq nliflmktse
      961 nvvinqlfqs kltqtgslip pyhslkmkgc kaallskkas vacgsgetkk yielskllkk
     1021 kgtssflqrl erggpttvaa qlrksltdii gklqnctphs vhcikpnnsk lpdtfdnfyv
     1081 saqlqyigvl dmikiirhgy pirlsftdfl srykdladta agekkklsak ercrlvlqqc
     1141 klqgwqigir kvflkywqad hlndlclqlq kkiitcqkvv rgflarqrll qkmsikqqev
     1201 tsiksflqnv edmglktyda lviqnasdia rendrlrnem naayhrekle arnrpeeghk
     1261 raedkggkvs edsfvgcrtp khfhsssvpv pmavdslvhs vagssirsps lhsvfsmdds
     1321 sslpsprkqp ppkpkrdpnt rlsasyeavs aclsaasket anevltrprp hsddystmkk
     1381 ipprkpkrsp ntklsgsyee ipgqkpgnvk qastvakpgg ydtvtvqrav sadgpqhgvl
     1441 slymsqeeee nepvyiemvg namksssaea espeqgesvy eemkyflpee gsngsgmipv
     1501 ltgsppllfe skkdvnvedg tldgnsqaal mykdscdipa pfpnllphrp pllvfpptpv
     1561 tcspasdesp ltplevkklp vletnlkypv qsegssplsp qysksqkgen erpaspglvv
     1621 fnvsskvtpp stpppplppp pppvpppisy rasthfafpp etcatflint gktstnsdls
     1681 kvpqrpnpaq lgcssspfsk lpyspkvara dhrklnsnss fpysptnsrs ltspldelts
     1741 lfnsgrsvlr ksaagckire pegaetnlnl rsrddpntsd igsetqdkna nnhgtqssnp
     1801 lsssvtaeng nsvsnglpee neysrlsags tagsliqrhk eshtsqvihq lrlsenesva
     1861 lqelldwrrk lceeredwqq ilhnteqrit apppppckkp tllkkvedts cnrlssgiwd
     1921 ttm
//
LOCUS       XP_053906542            1901 aa            linear   VRT 09-MAR-2023
DEFINITION  unconventional myosin-XVI isoform X2 [Cuculus canorus].
ACCESSION   XP_053906542
VERSION     XP_053906542.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050567.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1901
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1901
                     /product="unconventional myosin-XVI isoform X2"
                     /calculated_mol_wt=211953
     Region          24..309
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(92,94,98..99,102..104,106..107,111,114,123,125,127,
                     131..132,135..137,139..140,144,147,156,158,160,164..165,
                     168,171..172,174..175,179,182)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          92..123
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          125..156
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          158..188
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          221..252
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          254..285
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          415..1133
                     /region_name="MYSc_Myo16"
                     /note="class XVI myosin, motor domain; cd14878"
                     /db_xref="CDD:276844"
     Site            order(442..450,497..504,542..552,778..783)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:276844"
     Site            442..450
                     /site_type="other"
                     /note="purine-binding loop"
                     /db_xref="CDD:276844"
     Site            497..504
                     /site_type="other"
                     /note="P-loop"
                     /db_xref="CDD:276844"
     Site            542..552
                     /site_type="other"
                     /note="switch I region"
                     /db_xref="CDD:276844"
     Site            778..783
                     /site_type="other"
                     /note="switch II region"
                     /db_xref="CDD:276844"
     Site            807..830
                     /site_type="other"
                     /note="relay loop"
                     /db_xref="CDD:276844"
     Site            1066..1075
                     /site_type="other"
                     /note="SH1 helix"
                     /db_xref="CDD:276844"
     Site            order(1078..1096,1101..1133)
                     /site_type="other"
                     /note="converter subdomain"
                     /db_xref="CDD:276844"
     Region          1221..1606
                     /region_name="NYAP_N"
                     /note="Neuronal tyrosine-phosphorylated
                     phosphoinositide-3-kinase adapter; pfam15439"
                     /db_xref="CDD:464717"
     Region          1677..1852
                     /region_name="NYAP_C"
                     /note="Neuronal tyrosine-phosphorylated
                     phosphoinositide-3-kinase adapter; pfam15452"
                     /db_xref="CDD:464724"
     CDS             1..1901
                     /gene="MYO16"
                     /coded_by="XM_054050567.1:59..5764"
                     /db_xref="GeneID:104059151"
ORIGIN      
        1 meieqclles lplgqrqrlv krmrcdqika yyerekafqk redyvkklkh gknhrvhfnl
       61 pdmvqdaikr hddkevlrll kdgadphmlv ssggsllhlc arydnafaae ilidrgvnin
      121 hqdedfwtsm hvacacdnpd ivlllllaga nvllqdvngn ialdyaiegt esssillmyl
      181 eengvelnsl rqmkiqrpvt mltdvrqlis sggsvnqknd egvtllhvac angyrnvasl
      241 ildhgadlna vdnqywtplh laakygqtnl vklllmhwan pnllncnnek psdvaasefi
      301 eemllkaeiv weekmkdpla vpalsqeepy eeiihdlpti snklnplalp iakqdsllek
      361 dtmfkdaakg lckqqsqdst senvaanttt kleqiklmpp apnddlasls eltdssllye
      421 iqkrfnnnqi ytyigdilll vnpfkelpiy stmvtqlyls nsgklcsslp phifscaera
      481 yhmlfqeqrp qcfilsgesg sgkteackqi vkhlacrass srnifeikmk hvncileafg
      541 haktplnyfs scfikyfelq fcektktlva arlytymlek srvimqplnq snfhvfylmm
      601 dglsaeekyt lylsnfsahr ylsqtiledt tltgnpqnre klamlkqalg amgfnsleve
      661 nlfvilsail hlgdirftal tdtetafvsd lqlleqvawm lqvspdelas altsdvqyfk
      721 gdmivrrhti eiaefyrdll akslygrlfs flvntinccf qnqdetgsdq vfeigvldif
      781 gfeefqkntf eqlcvnmtne kihqyinevl flqeqaecvq egvametmys pgnhtaalnf
      841 ffqkpsgfls mldeesqsiw sveqslskrv qsyldtldtn tvysstkdgn gnlapkdqgs
      901 tftvmhyagr vtyeiagaie knkdslsqnl iflmktsenv vinqlfqskl tqtgslippy
      961 hslkmkgcka allskkasva cgsgetkkyi elskllkkkg tssflqrler ggpttvaaql
     1021 rksltdiigk lqnctphsvh cikpnnsklp dtfdnfyvsa qlqyigvldm ikiirhgypi
     1081 rlsftdflsr ykdladtaag ekkklsaker crlvlqqckl qgwqigirkv flkywqadhl
     1141 ndlclqlqkk iitcqkvvrg flarqrllqk msikqqevts iksflqnved mglktydalv
     1201 iqnasdiare ndrlrnemna ayhreklear nrpeeghkra edkggkvsed sfvgcrtpkh
     1261 fhsssvpvpm avdslvhsva gssirspslh svfsmddsss lpsprkqppp kpkrdpntrl
     1321 sasyeavsac lsaasketan evltrprphs ddystmkkip prkpkrspnt klsgsyeeip
     1381 gqkpgnvkqa stvakpggyd tvtvqravsa dgpqhgvlsl ymsqeeeene pvyiemvgna
     1441 mksssaeaes peqgesvyee mkyflpeegs ngsgmipvlt gsppllfesk kdvnvedgtl
     1501 dgnsqaalmy kdscdipapf pnllphrppl lvfpptpvtc spasdesplt plevkklpvl
     1561 etnlkypvqs egssplspqy sksqkgener paspglvvfn vsskvtppst pppplppppp
     1621 pvpppisyra sthfafppet catflintgk tstnsdlskv pqrpnpaqlg cssspfsklp
     1681 yspkvaradh rklnsnssfp ysptnsrslt spldeltslf nsgrsvlrks aagckirepe
     1741 gaetnlnlrs rddpntsdig setqdknann hgtqssnpls ssvtaengns vsnglpeene
     1801 ysrlsagsta gsliqrhkes htsqvihqlr lsenesvalq elldwrrklc eeredwqqil
     1861 hnteqritap ppppckkptl lkkvedtscn rlssgiwdtt m
//
LOCUS       XP_053906550            1901 aa            linear   VRT 09-MAR-2023
DEFINITION  unconventional myosin-XVI isoform X2 [Cuculus canorus].
ACCESSION   XP_053906550
VERSION     XP_053906550.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050575.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1901
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1901
                     /product="unconventional myosin-XVI isoform X2"
                     /calculated_mol_wt=211953
     Region          24..309
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(92,94,98..99,102..104,106..107,111,114,123,125,127,
                     131..132,135..137,139..140,144,147,156,158,160,164..165,
                     168,171..172,174..175,179,182)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          92..123
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          125..156
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          158..188
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          221..252
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          254..285
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          415..1133
                     /region_name="MYSc_Myo16"
                     /note="class XVI myosin, motor domain; cd14878"
                     /db_xref="CDD:276844"
     Site            order(442..450,497..504,542..552,778..783)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:276844"
     Site            442..450
                     /site_type="other"
                     /note="purine-binding loop"
                     /db_xref="CDD:276844"
     Site            497..504
                     /site_type="other"
                     /note="P-loop"
                     /db_xref="CDD:276844"
     Site            542..552
                     /site_type="other"
                     /note="switch I region"
                     /db_xref="CDD:276844"
     Site            778..783
                     /site_type="other"
                     /note="switch II region"
                     /db_xref="CDD:276844"
     Site            807..830
                     /site_type="other"
                     /note="relay loop"
                     /db_xref="CDD:276844"
     Site            1066..1075
                     /site_type="other"
                     /note="SH1 helix"
                     /db_xref="CDD:276844"
     Site            order(1078..1096,1101..1133)
                     /site_type="other"
                     /note="converter subdomain"
                     /db_xref="CDD:276844"
     Region          1221..1606
                     /region_name="NYAP_N"
                     /note="Neuronal tyrosine-phosphorylated
                     phosphoinositide-3-kinase adapter; pfam15439"
                     /db_xref="CDD:464717"
     Region          1677..1852
                     /region_name="NYAP_C"
                     /note="Neuronal tyrosine-phosphorylated
                     phosphoinositide-3-kinase adapter; pfam15452"
                     /db_xref="CDD:464724"
     CDS             1..1901
                     /gene="MYO16"
                     /coded_by="XM_054050575.1:231..5936"
                     /db_xref="GeneID:104059151"
ORIGIN      
        1 meieqclles lplgqrqrlv krmrcdqika yyerekafqk redyvkklkh gknhrvhfnl
       61 pdmvqdaikr hddkevlrll kdgadphmlv ssggsllhlc arydnafaae ilidrgvnin
      121 hqdedfwtsm hvacacdnpd ivlllllaga nvllqdvngn ialdyaiegt esssillmyl
      181 eengvelnsl rqmkiqrpvt mltdvrqlis sggsvnqknd egvtllhvac angyrnvasl
      241 ildhgadlna vdnqywtplh laakygqtnl vklllmhwan pnllncnnek psdvaasefi
      301 eemllkaeiv weekmkdpla vpalsqeepy eeiihdlpti snklnplalp iakqdsllek
      361 dtmfkdaakg lckqqsqdst senvaanttt kleqiklmpp apnddlasls eltdssllye
      421 iqkrfnnnqi ytyigdilll vnpfkelpiy stmvtqlyls nsgklcsslp phifscaera
      481 yhmlfqeqrp qcfilsgesg sgkteackqi vkhlacrass srnifeikmk hvncileafg
      541 haktplnyfs scfikyfelq fcektktlva arlytymlek srvimqplnq snfhvfylmm
      601 dglsaeekyt lylsnfsahr ylsqtiledt tltgnpqnre klamlkqalg amgfnsleve
      661 nlfvilsail hlgdirftal tdtetafvsd lqlleqvawm lqvspdelas altsdvqyfk
      721 gdmivrrhti eiaefyrdll akslygrlfs flvntinccf qnqdetgsdq vfeigvldif
      781 gfeefqkntf eqlcvnmtne kihqyinevl flqeqaecvq egvametmys pgnhtaalnf
      841 ffqkpsgfls mldeesqsiw sveqslskrv qsyldtldtn tvysstkdgn gnlapkdqgs
      901 tftvmhyagr vtyeiagaie knkdslsqnl iflmktsenv vinqlfqskl tqtgslippy
      961 hslkmkgcka allskkasva cgsgetkkyi elskllkkkg tssflqrler ggpttvaaql
     1021 rksltdiigk lqnctphsvh cikpnnsklp dtfdnfyvsa qlqyigvldm ikiirhgypi
     1081 rlsftdflsr ykdladtaag ekkklsaker crlvlqqckl qgwqigirkv flkywqadhl
     1141 ndlclqlqkk iitcqkvvrg flarqrllqk msikqqevts iksflqnved mglktydalv
     1201 iqnasdiare ndrlrnemna ayhreklear nrpeeghkra edkggkvsed sfvgcrtpkh
     1261 fhsssvpvpm avdslvhsva gssirspslh svfsmddsss lpsprkqppp kpkrdpntrl
     1321 sasyeavsac lsaasketan evltrprphs ddystmkkip prkpkrspnt klsgsyeeip
     1381 gqkpgnvkqa stvakpggyd tvtvqravsa dgpqhgvlsl ymsqeeeene pvyiemvgna
     1441 mksssaeaes peqgesvyee mkyflpeegs ngsgmipvlt gsppllfesk kdvnvedgtl
     1501 dgnsqaalmy kdscdipapf pnllphrppl lvfpptpvtc spasdesplt plevkklpvl
     1561 etnlkypvqs egssplspqy sksqkgener paspglvvfn vsskvtppst pppplppppp
     1621 pvpppisyra sthfafppet catflintgk tstnsdlskv pqrpnpaqlg cssspfsklp
     1681 yspkvaradh rklnsnssfp ysptnsrslt spldeltslf nsgrsvlrks aagckirepe
     1741 gaetnlnlrs rddpntsdig setqdknann hgtqssnpls ssvtaengns vsnglpeene
     1801 ysrlsagsta gsliqrhkes htsqvihqlr lsenesvalq elldwrrklc eeredwqqil
     1861 hnteqritap ppppckkptl lkkvedtscn rlssgiwdtt m
//
LOCUS       XP_009566740             446 aa            linear   VRT 09-MAR-2023
DEFINITION  2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial [Cuculus
            canorus].
ACCESSION   XP_009566740
VERSION     XP_009566740.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568445.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566740.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..446
                     /product="2-amino-3-ketobutyrate coenzyme A ligase,
                     mitochondrial"
                     /calculated_mol_wt=47675
     Region          54..445
                     /region_name="AAT_I"
                     /note="Aspartate aminotransferase (AAT) superfamily (fold
                     type I) of pyridoxal phosphate (PLP)-dependent enzymes.
                     PLP combines with an alpha-amino acid to form a compound
                     called a Schiff base or aldimine intermediate, which
                     depending on the reaction, is the...; cl18945"
                     /db_xref="CDD:450240"
     Site            order(100,160..162,186,229,233..234,258,260..261,289,293,
                     416)
                     /site_type="active"
                     /note="substrate-cofactor binding pocket [active]"
                     /db_xref="CDD:99747"
     Site            order(160..162,186,229,233,258,260..261,289,293)
                     /site_type="other"
                     /note="pyridoxal 5'-phosphate binding site [chemical
                     binding]"
                     /db_xref="CDD:99747"
     Site            293
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:99747"
     CDS             1..446
                     /gene="GCAT"
                     /coded_by="XM_009568445.2:12..1352"
                     /db_xref="GeneID:104065913"
ORIGIN      
        1 mtllerlwaa aapplaagrg samwrggvvg vlrcgvigga gsprcasgaa aaqlrrrles
       61 elddirgagt wkseriiasr qgphlrlagg gagilnfcan nylglsshpe viraaveale
      121 kfgaglssvr ficgtqsihk dleekiarfh qredailyas cfdanagife alltpedavl
      181 sdelnhasii dgirlckank yrykhmdmqd leaklqdaqk hrlrlvatdg afsmdgdiap
      241 lreicqlaqk ydalvfidec hatgflgpng rgtdellgvm dkvtiinstl gkalggaagg
      301 yttgpkplid llrqrsrpyl fsnslppavv gcaskaldll mesnaiaqsm aaktqrfrsk
      361 mtaagftisg kdhpicpvml gdarlaavma edmlnrgiyv igfsypvvpk gkarirvqis
      421 avhsdedidh cveaftevgr khgalp
//
LOCUS       XP_009566741             409 aa            linear   VRT 09-MAR-2023
DEFINITION  galanin receptor type 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_009566741
VERSION     XP_009566741.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568446.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..409
                     /product="galanin receptor type 3 isoform X1"
                     /calculated_mol_wt=46469
     Region          19..297
                     /region_name="7tmA_Gal2_Gal3_R"
                     /note="galanin receptor subtypes 2 and 3, member of the
                     class A family of seven-transmembrane G protein-coupled
                     receptors; cd15097"
                     /db_xref="CDD:320225"
     Region          20..46
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320225"
     Region          54..80
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320225"
     Site            order(76,79..80,92..97,99..100,103,148,150..154,178,
                     181..183,185..187,189..190,243,246..247,249..250,253,
                     264..265,267..269,272,275..276)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:320225"
     Region          92..122
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320225"
     Region          134..154
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320225"
     Region          178..207
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320225"
     Region          223..253
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320225"
     Region          265..290
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320225"
     CDS             1..409
                     /gene="GALR3"
                     /coded_by="XM_009568446.2:157..1386"
                     /db_xref="GeneID:104065915"
ORIGIN      
        1 mpagwnasse slelraagii vpvifslifl lgtvgnglvl avllrngqvk ynttnlfiln
       61 lamadlcfii fcvpfqatiy tldgwlfgaf ackavhfliy ltmyassftl aavsidryla
      121 iryplksrdl rtsrnagvai vaiwslsllf agpylsyyqi vhyhrvpici piwedrrrki
      181 ldiltfvfgy llpvivvsla yartikflwt svdpierise srkakckvtk mivavailfc
      241 lcwlphhlvi lcfwfghfpf nratyvcrla shclsyansc lnpivyalis khfrkhfkqv
      301 ftclffqnkp rkkkrrvgkk vhvgkgftns tkgfygnnte vtqiperntr krdpkgasrd
      361 arvwthhlqd amvsvqkeql eegslatagh plamtppret edfltvhhr
//
LOCUS       XP_053906584             409 aa            linear   VRT 09-MAR-2023
DEFINITION  galanin receptor type 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053906584
VERSION     XP_053906584.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050609.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..409
                     /product="galanin receptor type 3 isoform X1"
                     /calculated_mol_wt=46469
     Region          19..297
                     /region_name="7tmA_Gal2_Gal3_R"
                     /note="galanin receptor subtypes 2 and 3, member of the
                     class A family of seven-transmembrane G protein-coupled
                     receptors; cd15097"
                     /db_xref="CDD:320225"
     Region          20..46
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320225"
     Region          54..80
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320225"
     Site            order(76,79..80,92..97,99..100,103,148,150..154,178,
                     181..183,185..187,189..190,243,246..247,249..250,253,
                     264..265,267..269,272,275..276)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:320225"
     Region          92..122
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320225"
     Region          134..154
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320225"
     Region          178..207
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320225"
     Region          223..253
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320225"
     Region          265..290
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320225"
     CDS             1..409
                     /gene="GALR3"
                     /coded_by="XM_054050609.1:2781..4010"
                     /db_xref="GeneID:104065915"
ORIGIN      
        1 mpagwnasse slelraagii vpvifslifl lgtvgnglvl avllrngqvk ynttnlfiln
       61 lamadlcfii fcvpfqatiy tldgwlfgaf ackavhfliy ltmyassftl aavsidryla
      121 iryplksrdl rtsrnagvai vaiwslsllf agpylsyyqi vhyhrvpici piwedrrrki
      181 ldiltfvfgy llpvivvsla yartikflwt svdpierise srkakckvtk mivavailfc
      241 lcwlphhlvi lcfwfghfpf nratyvcrla shclsyansc lnpivyalis khfrkhfkqv
      301 ftclffqnkp rkkkrrvgkk vhvgkgftns tkgfygnnte vtqiperntr krdpkgasrd
      361 arvwthhlqd amvsvqkeql eegslatagh plamtppret edfltvhhr
//
LOCUS       XP_053906591             409 aa            linear   VRT 09-MAR-2023
DEFINITION  galanin receptor type 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053906591
VERSION     XP_053906591.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050616.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..409
                     /product="galanin receptor type 3 isoform X1"
                     /calculated_mol_wt=46469
     Region          19..297
                     /region_name="7tmA_Gal2_Gal3_R"
                     /note="galanin receptor subtypes 2 and 3, member of the
                     class A family of seven-transmembrane G protein-coupled
                     receptors; cd15097"
                     /db_xref="CDD:320225"
     Region          20..46
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320225"
     Region          54..80
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320225"
     Site            order(76,79..80,92..97,99..100,103,148,150..154,178,
                     181..183,185..187,189..190,243,246..247,249..250,253,
                     264..265,267..269,272,275..276)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:320225"
     Region          92..122
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320225"
     Region          134..154
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320225"
     Region          178..207
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320225"
     Region          223..253
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320225"
     Region          265..290
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320225"
     CDS             1..409
                     /gene="GALR3"
                     /coded_by="XM_054050616.1:340..1569"
                     /db_xref="GeneID:104065915"
ORIGIN      
        1 mpagwnasse slelraagii vpvifslifl lgtvgnglvl avllrngqvk ynttnlfiln
       61 lamadlcfii fcvpfqatiy tldgwlfgaf ackavhfliy ltmyassftl aavsidryla
      121 iryplksrdl rtsrnagvai vaiwslsllf agpylsyyqi vhyhrvpici piwedrrrki
      181 ldiltfvfgy llpvivvsla yartikflwt svdpierise srkakckvtk mivavailfc
      241 lcwlphhlvi lcfwfghfpf nratyvcrla shclsyansc lnpivyalis khfrkhfkqv
      301 ftclffqnkp rkkkrrvgkk vhvgkgftns tkgfygnnte vtqiperntr krdpkgasrd
      361 arvwthhlqd amvsvqkeql eegslatagh plamtppret edfltvhhr
//
LOCUS       XP_053906600             395 aa            linear   VRT 09-MAR-2023
DEFINITION  galanin receptor type 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053906600
VERSION     XP_053906600.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050625.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..395
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..395
                     /product="galanin receptor type 3 isoform X2"
                     /calculated_mol_wt=44968
     Region          19..283
                     /region_name="7tmA_Gal2_Gal3_R"
                     /note="galanin receptor subtypes 2 and 3, member of the
                     class A family of seven-transmembrane G protein-coupled
                     receptors; cd15097"
                     /db_xref="CDD:320225"
     Region          20..46
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320225"
     Region          54..80
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320225"
     Site            order(76,79..80,92..97,99..100,103,134,136..140,164,
                     167..169,171..173,175..176,229,232..233,235..236,239,
                     250..251,253..255,258,261..262)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:320225"
     Region          120..140
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320225"
     Region          164..193
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320225"
     Region          209..239
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320225"
     Region          251..276
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320225"
     CDS             1..395
                     /gene="GALR3"
                     /coded_by="XM_054050625.1:23..1210"
                     /db_xref="GeneID:104065915"
ORIGIN      
        1 mpagwnasse slelraagii vpvifslifl lgtvgnglvl avllrngqvk ynttnlfiln
       61 lamadlcfii fcvpfqatiy tldgwlfgaf ackavhfliy ltiylairyp lksrdlrtsr
      121 nagvaivaiw slsllfagpy lsyyqivhyh rvpicipiwe drrrkildil tfvfgyllpv
      181 ivvslayart ikflwtsvdp ierisesrka kckvtkmiva vailfclcwl phhlvilcfw
      241 fghfpfnrat yvcrlashcl syansclnpi vyaliskhfr khfkqvftcl ffqnkprkkk
      301 rrvgkkvhvg kgftnstkgf ygnntevtqi perntrkrdp kgasrdarvw thhlqdamvs
      361 vqkeqleegs lataghplam tppretedfl tvhhr
//
LOCUS       XP_053906610             251 aa            linear   VRT 09-MAR-2023
DEFINITION  noggin-like [Cuculus canorus].
ACCESSION   XP_053906610
VERSION     XP_053906610.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050635.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..251
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..251
                     /product="noggin-like"
                     /calculated_mol_wt=28170
     Region          68..250
                     /region_name="Noggin"
                     /note="pfam05806"
                     /db_xref="CDD:399070"
     CDS             1..251
                     /gene="LOC128849316"
                     /coded_by="XM_054050635.1:19..774"
                     /db_xref="GeneID:128849316"
ORIGIN      
        1 megphsgcll llfcllpplg tlgpppeerq eppllsstpd paahmlrgrp sapvrpysls
       61 lspedyrysp kprhlrpgrl rrllgsafdp fwmaaeepwn rngsipednl eslsrdlaeg
      121 agryrrklwr eaeglemptl lppgpelspe vtralahrlr qwlveqaacr ltstwvdlgp
      181 ifwprwvrht acqtgppscs wppgmtcraa qvthikllaw hcwapqrpgp phcswrqipy
      241 pvvaackcsc r
//
LOCUS       XP_009561682             589 aa            linear   VRT 09-MAR-2023
DEFINITION  neuroepithelial cell-transforming gene 1 protein isoform X1
            [Cuculus canorus].
ACCESSION   XP_009561682
VERSION     XP_009561682.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563387.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561682.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..589
                     /product="neuroepithelial cell-transforming gene 1 protein
                     isoform X1"
                     /calculated_mol_wt=66906
     Region          173..349
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; smart00325"
                     /db_xref="CDD:214619"
     Site            order(176,180,273,300..301,304..305,307..308,311..312,
                     315..316,319,345,349)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          363..497
                     /region_name="PH_Net1"
                     /note="Neuroepithelial cell transforming 1 Pleckstrin
                     homology (PH) domain; cd13224"
                     /db_xref="CDD:270044"
     CDS             1..589
                     /gene="NET1"
                     /coded_by="XM_009563387.2:19..1788"
                     /db_xref="GeneID:104061443"
ORIGIN      
        1 meaepaaqkp prrrrgrvsa prspqgdsgd reaascsryp lrrgssftfl tpgphwdftl
       61 krkrrekddd vvslcsldfk epsnkrvrpl arvtslanli spvrngavrr fgqtiqsfal
      121 rgdskspsca qkscsrsaap tppkrrnsvl wsemldvnmk eslstkeikr qeaiyemsrg
      181 eqdliedlkl arkayhdpml klsimseeel thifgdldsy iplhedllas lgeatkpdgt
      241 veqigpilvk wlprlhaykg ycsnqlaaka lldqkkqdrr vqdflqrcle spfsrkldlw
      301 sfldiprsrl vkyplllkei lrhtpkdhpd iqileeaisi iqgvlsdinl kkgesecqyy
      361 idkleyldek qkdpriegsk vllchgelkn knghklyvfl fqdilvltrp vtrnerqayq
      421 vyrqpipvqe liledlqdgd vkmggsfrga fgnadkakni frvrfqdpsp gqshtlqand
      481 vfhkqqwvnc irtaiapfqr taaaaeltel pelseeseen npsapnvraq krqsamsgit
      541 emeldestse rssildseea kglkthrtss ghrktrekql sgkrketlv
//
LOCUS       XP_009561683             540 aa            linear   VRT 09-MAR-2023
DEFINITION  neuroepithelial cell-transforming gene 1 protein isoform X2
            [Cuculus canorus].
ACCESSION   XP_009561683
VERSION     XP_009561683.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563388.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561683.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..540
                     /product="neuroepithelial cell-transforming gene 1 protein
                     isoform X2"
                     /calculated_mol_wt=61321
     Region          124..300
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; smart00325"
                     /db_xref="CDD:214619"
     Site            order(127,131,224,251..252,255..256,258..259,262..263,
                     266..267,270,296,300)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          314..448
                     /region_name="PH_Net1"
                     /note="Neuroepithelial cell transforming 1 Pleckstrin
                     homology (PH) domain; cd13224"
                     /db_xref="CDD:270044"
     CDS             1..540
                     /gene="NET1"
                     /coded_by="XM_009563388.2:73..1695"
                     /db_xref="GeneID:104061443"
ORIGIN      
        1 mvahdelggl lpikrtirvi daqnqsfrep eepsnkrvrp larvtslanl ispvrngavr
       61 rfgqtiqsfa lrgdskspsc aqkscsrsaa ptppkrrnsv lwsemldvnm keslstkeik
      121 rqeaiyemsr geqdliedlk larkayhdpm lklsimseee lthifgdlds yiplhedlla
      181 slgeatkpdg tveqigpilv kwlprlhayk gycsnqlaak alldqkkqdr rvqdflqrcl
      241 espfsrkldl wsfldiprsr lvkyplllke ilrhtpkdhp diqileeais iiqgvlsdin
      301 lkkgesecqy yidkleylde kqkdpriegs kvllchgelk nknghklyvf lfqdilvltr
      361 pvtrnerqay qvyrqpipvq eliledlqdg dvkmggsfrg afgnadkakn ifrvrfqdps
      421 pgqshtlqan dvfhkqqwvn cirtaiapfq rtaaaaelte lpelseesee nnpsapnvra
      481 qkrqsamsgi temeldests erssildsee akglkthrts sghrktrekq lsgkrketlv
//
LOCUS       XP_009554699             286 aa            linear   VRT 09-MAR-2023
DEFINITION  secreted frizzled-related protein 2 [Cuculus canorus].
ACCESSION   XP_009554699
VERSION     XP_009554699.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556404.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..286
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..286
                     /product="secreted frizzled-related protein 2"
                     /calculated_mol_wt=32645
     Region          22..162
                     /region_name="CRD_sizzled"
                     /note="Cysteine-rich domain of the sizzled protein;
                     cd07452"
                     /db_xref="CDD:143561"
     Site            order(39,41..43,45..47)
                     /site_type="other"
                     /note="putative Wnt binding site [polypeptide binding]"
                     /db_xref="CDD:143561"
     Region          156..285
                     /region_name="NTR_Sfrp1_like"
                     /note="NTR domain, Secreted frizzled-related protein
                     (Sfrp) 1-like subfamily; composed of proteins similar to
                     human Sfrp1, Sfrp2 and Sfrp5. Sfrps are soluble proteins
                     containing an NTR domain C-terminal to a cysteine-rich
                     Frizzled domain. They show diverse...; cd03580"
                     /db_xref="CDD:239635"
     CDS             1..286
                     /gene="LOC104055294"
                     /coded_by="XM_009556404.2:1..861"
                     /db_xref="GeneID:104055294"
ORIGIN      
        1 mvltaemlvf alsgflrvat gfdiglstkc vvipkemhmc hkigysemrl pnlmghtsmg
       61 evilksttwq hlahtechph vrtflcslfa picldtfihp cksmcvavrn scapvlachg
      121 hawpdsldcd rfpgdedmcl asltkeykyl hkvlpkpacq acpaveefft ykrvlevfcd
      181 nnfavkvkls kqrtgfghqe yniecqvefi tqgsllpyet qstiqqwlli nenctqrlip
      241 thrpmmyllv gnieegiilv nqvyrwqrkd sqlalatqkw ryhkcl
//
LOCUS       XP_053906661            1189 aa            linear   VRT 09-MAR-2023
DEFINITION  phospholipid-transporting ATPase IB [Cuculus canorus].
ACCESSION   XP_053906661
VERSION     XP_053906661.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050686.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1189
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1189
                     /product="phospholipid-transporting ATPase IB"
                     /calculated_mol_wt=133539
     Region          69..1107
                     /region_name="ATPase-Plipid"
                     /note="phospholipid-translocating P-type ATPase, flippase;
                     TIGR01652"
                     /db_xref="CDD:273734"
     Site            order(429..431,570,593..595,659,706..708,796,799,802,822,
                     825)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:319770"
     CDS             1..1189
                     /gene="ATP8A2"
                     /coded_by="XM_054050686.1:54..3623"
                     /db_xref="GeneID:104064155"
ORIGIN      
        1 msrragpaaa lrmplqrkss rihsaagpvc spagykkadd emsgatssad ldeapartiy
       61 lnqpqqskfr dnrvstakys vltflprfly eqirkaanaf flfiallqqi pdvsptgryt
      121 tlvpllfilt vagikeiied ykrhkadnav nkkktivlrn gmwqnimwke vavgdivkvt
      181 ngqhlpadmi ivsssepqam cyietanldg etnlkirqgl sqtaslqsre elmkvsgrie
      241 cegpnrhlyd ftgnlrldgq spvpvgpdqi llrgaqlrnt qwvlgivvyt ghdtklmqns
      301 tkvplkrsnv dkvtnmqilv lfcillvmal vssvgallwn rthgevvwyl gsnemlsvnf
      361 gynlltfiil ynnlipisll vtlevvkftq alfinwdldm yypetdtpam artsnlneel
      421 gqvkylfsdk tgtltcnimn fkkcsiagvt yghfpelere rssedfsqlp pstsescefd
      481 dprllqnien dhptavhiqe fltllavcht vvperqgnki iyqasspdeg alvkgakklg
      541 yvftgrtphs viiealgkek tfeilnvlef ssnrkrmsvi vrtpagqlrl yckgadnvif
      601 erlskdsqym eqtlchleyf ateglrtlci aytdlsedsy rewlnvynes stvlkdrtqk
      661 leecyeiiek dllllgatai edrlqagvpe tiatlikagi kiwiltgdkq etalnigysc
      721 rlisqsmsli lvnedsldat rasltqhcts lgeslgkend ialiidghtl kyalsfevrq
      781 sfldlalsck aviccrvspl qkseivdmvk khvnaitlai gdgandvgmi qtahvgvgis
      841 gnegmqatnc sdyaiaqfsy laklllvhga wsyhrvtkci lycfyknlvl yiielwfafi
      901 ngfsgqilfe rwciglynvi ftalppftlg ifdrpcaqds mlrfpqlyki tqnadgfntr
      961 vfwghcinal ihsiilfwfp lkmlehdavf tngmgidylf vgnivytfvv vtvclkagle
     1021 ttawtifshl avwgsmllwl vffgvysaiw pifpiapdml gqagmvlrcg yfwfglfllp
     1081 saclvkdvaw taakhtyhkt lleqvqelet ktrelekaml rdsngksmne rdhllkrlgr
     1141 ktppslfrar svqqsvshgy afsqeehgvv sqsqvvrsyd ttkrraeie
//
LOCUS       XP_053906665             734 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA replication licensing factor MCM5 [Cuculus canorus].
ACCESSION   XP_053906665
VERSION     XP_053906665.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050690.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..734
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..734
                     /product="DNA replication licensing factor MCM5"
                     /calculated_mol_wt=82272
     Region          32..130
                     /region_name="MCM_N"
                     /note="MCM N-terminal domain; pfam14551"
                     /db_xref="CDD:464206"
     Region          136..649
                     /region_name="MCM"
                     /note="minichromosome maintenance proteins; smart00350"
                     /db_xref="CDD:214631"
     Site            order(342,363,365..369,371,382..384,388..389,392,403,405,
                     409..412,420..422,426..432,435..436,446,453,460,464,466,
                     468,470..472,475..477,493,506,509,513,522,524,529,533,
                     537..538,540..542,556,574,579..580,583,586..587,590..591,
                     610,613,617)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:350662"
     Site            order(342..344,383..389,464,513,532,539,610..611)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350662"
     Site            order(418,420,471..472)
                     /site_type="other"
                     /note="nucleic acid binding site [nucleotide binding]"
                     /db_xref="CDD:350662"
     CDS             1..734
                     /gene="MCM5"
                     /coded_by="XM_054050690.1:97..2301"
                     /db_xref="GeneID:104065847"
ORIGIN      
        1 msgfddpgiy ysdsfggdas vdegqvrksq lqkrfkeflr qyrvgtdrtg ftfkyrdelk
       61 rhynlsqywv evemedlasf dedladylyk qpaehlqlle eaakevadev trprpsgeet
      121 lqdiqvmlrs danaanirsl ksdqmshlvk ipgiviaatp vrakatriai qcrscrntis
      181 niavrpgleg yalprkcnte qagrpkcpld pyfimpdkck cvdfqvlklq espdavphge
      241 mprhlqlycd rylcdkvvpg nrvtimgiys ikksaqsknk srdnvgvgir sayirvvgiq
      301 vdvegsghsf aglvtpqeee elrrlaampn iyetiaksia psiygstdik kaiacllfgg
      361 srkrlpdglt rrgdinllml gdpgtaksql lkfvekcspi gvytsgkgss aagltasvir
      421 dpssrsffme ggamvladgg vvcidefdkm reddrvaihe ameqqtisia kagitttlns
      481 rcsvlaaans vfgrwdetkg eenidfmpti lsrfdmifiv kdehneerdm tlakhvmslh
      541 vsaltqtqav egeielnklk klisfcrtrc gprlsaaaae klknryvlmr sgtrqheqes
      601 drrssipitv rqleaivria eslakmklqp fstevdveea lrlfqvstld aamsgslsga
      661 egfttqedqe mlsriekqlk rrfaigsqvs ehsivqdfmr qkypehaiyk vlqlmmrrge
      721 iqhrmqrkvl yrik
//
LOCUS       XP_053906667             734 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA replication licensing factor MCM5 [Cuculus canorus].
ACCESSION   XP_053906667
VERSION     XP_053906667.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050692.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..734
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..734
                     /product="DNA replication licensing factor MCM5"
                     /calculated_mol_wt=82272
     Region          32..130
                     /region_name="MCM_N"
                     /note="MCM N-terminal domain; pfam14551"
                     /db_xref="CDD:464206"
     Region          136..649
                     /region_name="MCM"
                     /note="minichromosome maintenance proteins; smart00350"
                     /db_xref="CDD:214631"
     Site            order(342,363,365..369,371,382..384,388..389,392,403,405,
                     409..412,420..422,426..432,435..436,446,453,460,464,466,
                     468,470..472,475..477,493,506,509,513,522,524,529,533,
                     537..538,540..542,556,574,579..580,583,586..587,590..591,
                     610,613,617)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:350662"
     Site            order(342..344,383..389,464,513,532,539,610..611)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350662"
     Site            order(418,420,471..472)
                     /site_type="other"
                     /note="nucleic acid binding site [nucleotide binding]"
                     /db_xref="CDD:350662"
     CDS             1..734
                     /gene="MCM5"
                     /coded_by="XM_054050692.1:120..2324"
                     /db_xref="GeneID:104065847"
ORIGIN      
        1 msgfddpgiy ysdsfggdas vdegqvrksq lqkrfkeflr qyrvgtdrtg ftfkyrdelk
       61 rhynlsqywv evemedlasf dedladylyk qpaehlqlle eaakevadev trprpsgeet
      121 lqdiqvmlrs danaanirsl ksdqmshlvk ipgiviaatp vrakatriai qcrscrntis
      181 niavrpgleg yalprkcnte qagrpkcpld pyfimpdkck cvdfqvlklq espdavphge
      241 mprhlqlycd rylcdkvvpg nrvtimgiys ikksaqsknk srdnvgvgir sayirvvgiq
      301 vdvegsghsf aglvtpqeee elrrlaampn iyetiaksia psiygstdik kaiacllfgg
      361 srkrlpdglt rrgdinllml gdpgtaksql lkfvekcspi gvytsgkgss aagltasvir
      421 dpssrsffme ggamvladgg vvcidefdkm reddrvaihe ameqqtisia kagitttlns
      481 rcsvlaaans vfgrwdetkg eenidfmpti lsrfdmifiv kdehneerdm tlakhvmslh
      541 vsaltqtqav egeielnklk klisfcrtrc gprlsaaaae klknryvlmr sgtrqheqes
      601 drrssipitv rqleaivria eslakmklqp fstevdveea lrlfqvstld aamsgslsga
      661 egfttqedqe mlsriekqlk rrfaigsqvs ehsivqdfmr qkypehaiyk vlqlmmrrge
      721 iqhrmqrkvl yrik
//
LOCUS       XP_009566662             296 aa            linear   VRT 09-MAR-2023
DEFINITION  heme oxygenase 1 [Cuculus canorus].
ACCESSION   XP_009566662
VERSION     XP_009566662.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568367.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566662.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..296
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..296
                     /product="heme oxygenase 1"
                     /calculated_mol_wt=33595
     Region          15..219
                     /region_name="Heme_oxygenase"
                     /note="Heme oxygenase; pfam01126"
                     /db_xref="CDD:395895"
     Site            order(21,28,31..32,37,41,137..139,145..146,150,182,186,
                     210,213,217)
                     /site_type="other"
                     /note="heme binding site [chemical binding]"
                     /db_xref="CDD:350856"
     Region          130..157
                     /region_name="kinked helix"
                     /note="kinked helix [structural motif]"
                     /db_xref="CDD:350856"
     CDS             1..296
                     /gene="HMOX1"
                     /coded_by="XM_009568367.2:128..1018"
                     /db_xref="GeneID:104065846"
ORIGIN      
        1 metsqkhsce smskdlselm keatkevheq aentpfmknf qkgqvslhef klvtaslyfi
       61 ysaleeeier nknnpvfapv yfpaelhrka aleedleyfy gsnwkeeipc peatqkyvdr
      121 lhyvgknhpe llvahaytry lgdlsggqvl kkiaqkalql pstgeglaff tfdgvsnatk
      181 fkqlyrsrmn alemdlatkr rvleeakkaf llniqvfeal qelvskgqen ghpgqpkmel
      241 rtrnankshe rgpapgkese rtkkrhtnmi pttplvrwil alsflattva vglfam
//
LOCUS       XP_053906694             767 aa            linear   VRT 09-MAR-2023
DEFINITION  RAD50-interacting protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053906694
VERSION     XP_053906694.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050719.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..767
                     /product="RAD50-interacting protein 1 isoform X1"
                     /calculated_mol_wt=87975
     Region          <33..141
                     /region_name="End3"
                     /note="Actin cytoskeleton-regulatory complex protein END3;
                     pfam12761"
                     /db_xref="CDD:432765"
     Region          272..759
                     /region_name="RINT1_TIP1"
                     /note="RINT-1 / TIP-1 family; pfam04437"
                     /db_xref="CDD:461309"
     CDS             1..767
                     /gene="RINT1"
                     /coded_by="XM_054050719.1:649..2952"
                     /db_xref="GeneID:104056071"
ORIGIN      
        1 matvavrkke vtrdldhcdi pfyvsefver evgndyeslk klenliekls enkkqleeqv
       61 ltvssevpkr iqnalknaed srkslnqlle eetllsnsin shllnaqplm edlgvlisqv
      121 eeieqhlsyl kwisrieels dsiqqylmtn nvpeaastla fmaeldlklq ksscshllaf
      181 vrstvkfwhk ilkdklssdf eevlnqlrwp fvgppqsqaf glaapanapd vynnlemlfc
      241 qllklqtsde lltkpkqlpe kyslplsppi ilpmqimlnp lqkrfkyhft gnkqtnvlnk
      301 pewyltqvlm wignhakfld ekiqpildka gssvnaglef sralvmlile klaadipcil
      361 yddtlfchlv devllferel ysvhgylssf pscmhilsee ccfqrwltve kkfalqkmds
      421 mlsseaawis qykditdvde mkvpdcaetf mtlllvitdr yknlptasrk lqflglqkel
      481 vddfrirltq vmkeetrasl gfrycailna vnyiatvlad wadnvfflql qqaelevrae
      541 sntvsklelg qlasmeasvf ddminllerl khdmltrqvd hvfrevkdaa klyrkerwls
      601 lpsqaeqavm slsssacpml ltlrdrllql eqqlchslfk ifwqmlaekv dtyiyqeiim
      661 anhfneggaa qlqfdmsrnl fplfshyckr penyfkhike aciilnlnvg salllkdvlq
      721 sasedetlip nqpsataaln elgvyklaqk dveillnlra swpntgk
//
LOCUS       XP_053906698             767 aa            linear   VRT 09-MAR-2023
DEFINITION  RAD50-interacting protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053906698
VERSION     XP_053906698.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050723.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..767
                     /product="RAD50-interacting protein 1 isoform X1"
                     /calculated_mol_wt=87975
     Region          <33..141
                     /region_name="End3"
                     /note="Actin cytoskeleton-regulatory complex protein END3;
                     pfam12761"
                     /db_xref="CDD:432765"
     Region          272..759
                     /region_name="RINT1_TIP1"
                     /note="RINT-1 / TIP-1 family; pfam04437"
                     /db_xref="CDD:461309"
     CDS             1..767
                     /gene="RINT1"
                     /coded_by="XM_054050723.1:403..2706"
                     /db_xref="GeneID:104056071"
ORIGIN      
        1 matvavrkke vtrdldhcdi pfyvsefver evgndyeslk klenliekls enkkqleeqv
       61 ltvssevpkr iqnalknaed srkslnqlle eetllsnsin shllnaqplm edlgvlisqv
      121 eeieqhlsyl kwisrieels dsiqqylmtn nvpeaastla fmaeldlklq ksscshllaf
      181 vrstvkfwhk ilkdklssdf eevlnqlrwp fvgppqsqaf glaapanapd vynnlemlfc
      241 qllklqtsde lltkpkqlpe kyslplsppi ilpmqimlnp lqkrfkyhft gnkqtnvlnk
      301 pewyltqvlm wignhakfld ekiqpildka gssvnaglef sralvmlile klaadipcil
      361 yddtlfchlv devllferel ysvhgylssf pscmhilsee ccfqrwltve kkfalqkmds
      421 mlsseaawis qykditdvde mkvpdcaetf mtlllvitdr yknlptasrk lqflglqkel
      481 vddfrirltq vmkeetrasl gfrycailna vnyiatvlad wadnvfflql qqaelevrae
      541 sntvsklelg qlasmeasvf ddminllerl khdmltrqvd hvfrevkdaa klyrkerwls
      601 lpsqaeqavm slsssacpml ltlrdrllql eqqlchslfk ifwqmlaekv dtyiyqeiim
      661 anhfneggaa qlqfdmsrnl fplfshyckr penyfkhike aciilnlnvg salllkdvlq
      721 sasedetlip nqpsataaln elgvyklaqk dveillnlra swpntgk
//
LOCUS       XP_053906707             475 aa            linear   VRT 09-MAR-2023
DEFINITION  RAD50-interacting protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053906707
VERSION     XP_053906707.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050732.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..475
                     /product="RAD50-interacting protein 1 isoform X2"
                     /calculated_mol_wt=54509
     Region          9..467
                     /region_name="RINT1_TIP1"
                     /note="RINT-1 / TIP-1 family; pfam04437"
                     /db_xref="CDD:461309"
     CDS             1..475
                     /gene="RINT1"
                     /coded_by="XM_054050732.1:685..2112"
                     /db_xref="GeneID:104056071"
ORIGIN      
        1 metpllpwpe wyltqvlmwi gnhakfldek iqpildkags svnaglefsr alvmlilekl
       61 aadipcilyd dtlfchlvde vllferelys vhgylssfps cmhilseecc fqrwltvekk
      121 falqkmdsml sseaawisqy kditdvdemk vpdcaetfmt lllvitdryk nlptasrklq
      181 flglqkelvd dfrirltqvm keetraslgf rycailnavn yiatvladwa dnvfflqlqq
      241 aelevraesn tvsklelgql asmeasvfdd minllerlkh dmltrqvdhv frevkdaakl
      301 yrkerwlslp sqaeqavmsl sssacpmllt lrdrllqleq qlchslfkif wqmlaekvdt
      361 yiyqeiiman hfneggaaql qfdmsrnlfp lfshyckrpe nyfkhikeac iilnlnvgsa
      421 lllkdvlqsa sedetlipnq psataalnel gvyklaqkdv eillnlrasw pntgk
//
LOCUS       XP_053906717             144 aa            linear   VRT 09-MAR-2023
DEFINITION  EF-hand calcium-binding domain-containing protein 10 [Cuculus
            canorus].
ACCESSION   XP_053906717
VERSION     XP_053906717.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050742.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..144
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..144
                     /product="EF-hand calcium-binding domain-containing
                     protein 10"
                     /calculated_mol_wt=16464
     Region          21..67
                     /region_name="DD_EFCAB10"
                     /note="dimerization/docking (D/D) domain found in EF-hand
                     calcium-binding domain-containing protein 10 (EFCAB10) and
                     similar proteins; cd22976"
                     /db_xref="CDD:438545"
     CDS             1..144
                     /gene="EFCAB10"
                     /coded_by="XM_054050742.1:38..472"
                     /db_xref="GeneID:104056098"
ORIGIN      
        1 maareqelcr gerspeqphr eqqcreylrq hripellhrl salllyhrpe rprefliqal
       61 ervaaarrae gefpdlmdda nlgamfglld vlgqghvtap qfrealktlg lgtedlqtgd
      121 danitldtfk eevkkkmles wavy
//
LOCUS       XP_053906733             371 aa            linear   VRT 09-MAR-2023
DEFINITION  28S ribosomal protein S31, mitochondrial isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053906733
VERSION     XP_053906733.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050758.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..371
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..371
                     /product="28S ribosomal protein S31, mitochondrial isoform
                     X1"
                     /calculated_mol_wt=41615
     Region          72..369
                     /region_name="MRP-S31"
                     /note="Mitochondrial 28S ribosomal protein S31; pfam15433"
                     /db_xref="CDD:464714"
     CDS             1..371
                     /gene="MRPS31"
                     /coded_by="XM_054050758.1:28..1143"
                     /db_xref="GeneID:104066134"
ORIGIN      
        1 mwalggscrl ggrllagaas ggeaagrprs riqklfstss vlsaekdesa askdstteva
       61 sknregmaet pkqklldiig nmkvevtyrk klqelktrei kkqatnklkg lesegtmlqk
      121 atedtqrgkp lnpelveava avasslpldk kqtesellaq lrrheettdk qkkggtvnlr
      181 nvisemaakr qlqaqrgvri snrislklde dgqmlrrgrl spqsfdsrgs lkgakrlnif
      241 tkasketeta letvssptiw dlefakaiaa itaqpprngf eemiqwtkeg ilwefpidne
      301 vgmeedaefh ehiflekhle nfpkqgpirh fmelvicgls knpyltvkqk iehiewfhty
      361 feekkellqe m
//
LOCUS       XP_053906739             370 aa            linear   VRT 09-MAR-2023
DEFINITION  28S ribosomal protein S31, mitochondrial isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053906739
VERSION     XP_053906739.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050764.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..370
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..370
                     /product="28S ribosomal protein S31, mitochondrial isoform
                     X2"
                     /calculated_mol_wt=41528
     Region          71..368
                     /region_name="MRP-S31"
                     /note="Mitochondrial 28S ribosomal protein S31; pfam15433"
                     /db_xref="CDD:464714"
     CDS             1..370
                     /gene="MRPS31"
                     /coded_by="XM_054050764.1:28..1140"
                     /db_xref="GeneID:104066134"
ORIGIN      
        1 mwalggscrl ggrllagaas ggeaagrprr iqklfstssv lsaekdesaa skdsttevas
       61 knregmaetp kqklldiign mkvevtyrkk lqelktreik kqatnklkgl esegtmlqka
      121 tedtqrgkpl npelveavaa vasslpldkk qtesellaql rrheettdkq kkggtvnlrn
      181 visemaakrq lqaqrgvris nrislklded gqmlrrgrls pqsfdsrgsl kgakrlnift
      241 kasketetal etvssptiwd lefakaiaai taqpprngfe emiqwtkegi lwefpidnev
      301 gmeedaefhe hiflekhlen fpkqgpirhf melvicglsk npyltvkqki ehiewfhtyf
      361 eekkellqem
//
LOCUS       XP_053906752             571 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily A member 5 [Cuculus
            canorus].
ACCESSION   XP_053906752
VERSION     XP_053906752.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050777.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..571
                     /product="potassium voltage-gated channel subfamily A
                     member 5"
                     /calculated_mol_wt=63122
     Region          88..214
                     /region_name="BTB_POZ"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; cl38908"
                     /db_xref="CDD:453885"
     Region          217..486
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..571
                     /gene="LOC104066617"
                     /coded_by="XM_054050777.1:139..1854"
                     /db_xref="GeneID:104066617"
ORIGIN      
        1 meialvtlgn ggatalagge dgaargdrls dgqerapqpp prrketsgap aaemgppeeg
       61 ghrrgmamaa ageeeeeavv nrgalhhqrv linisglrfe tqlgtlnqfp dtllgdpdkr
      121 iryfdplrne yffdrnrpsf dgilyfyqsg gklrrpvnvs idvfadeirf yqlgeeamer
      181 fredegfike eekplprnef qrqvwlifey pessgsarai aivsvlvili siitfcletl
      241 pefrderemp mplppqsggl ngttgdsppm qppsslsdpf fiiettcviw ftfellvrff
      301 acpskpefsr nimniidiva iipyfitlgt elaheqqepr aggsnggggq qqamslailr
      361 virlvrvfri fklsrhskgl qilgqtlkas mrelglliff lfigvilfss avyfaeaddp
      421 eshfssipda fwwavvtmtt vgygdmrpvt vggkivgslc aiagvltial pvpvivsnfn
      481 yfyhretdhe eqavlkdehs saqgstaggd akrrnssrns lsksvvhlen segfnngtss
      541 lektnikaks ntdlrkslya lcldtnretd l
//
LOCUS       XP_053906760             571 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily A member 5 [Cuculus
            canorus].
ACCESSION   XP_053906760
VERSION     XP_053906760.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050785.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..571
                     /product="potassium voltage-gated channel subfamily A
                     member 5"
                     /calculated_mol_wt=63122
     Region          88..214
                     /region_name="BTB_POZ"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; cl38908"
                     /db_xref="CDD:453885"
     Region          217..486
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..571
                     /gene="LOC104066617"
                     /coded_by="XM_054050785.1:139..1854"
                     /db_xref="GeneID:104066617"
ORIGIN      
        1 meialvtlgn ggatalagge dgaargdrls dgqerapqpp prrketsgap aaemgppeeg
       61 ghrrgmamaa ageeeeeavv nrgalhhqrv linisglrfe tqlgtlnqfp dtllgdpdkr
      121 iryfdplrne yffdrnrpsf dgilyfyqsg gklrrpvnvs idvfadeirf yqlgeeamer
      181 fredegfike eekplprnef qrqvwlifey pessgsarai aivsvlvili siitfcletl
      241 pefrderemp mplppqsggl ngttgdsppm qppsslsdpf fiiettcviw ftfellvrff
      301 acpskpefsr nimniidiva iipyfitlgt elaheqqepr aggsnggggq qqamslailr
      361 virlvrvfri fklsrhskgl qilgqtlkas mrelglliff lfigvilfss avyfaeaddp
      421 eshfssipda fwwavvtmtt vgygdmrpvt vggkivgslc aiagvltial pvpvivsnfn
      481 yfyhretdhe eqavlkdehs saqgstaggd akrrnssrns lsksvvhlen segfnngtss
      541 lektnikaks ntdlrkslya lcldtnretd l
//
LOCUS       XP_053906770             571 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily A member 5 [Cuculus
            canorus].
ACCESSION   XP_053906770
VERSION     XP_053906770.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050795.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..571
                     /product="potassium voltage-gated channel subfamily A
                     member 5"
                     /calculated_mol_wt=63122
     Region          88..214
                     /region_name="BTB_POZ"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; cl38908"
                     /db_xref="CDD:453885"
     Region          217..486
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..571
                     /gene="LOC104066617"
                     /coded_by="XM_054050795.1:139..1854"
                     /db_xref="GeneID:104066617"
ORIGIN      
        1 meialvtlgn ggatalagge dgaargdrls dgqerapqpp prrketsgap aaemgppeeg
       61 ghrrgmamaa ageeeeeavv nrgalhhqrv linisglrfe tqlgtlnqfp dtllgdpdkr
      121 iryfdplrne yffdrnrpsf dgilyfyqsg gklrrpvnvs idvfadeirf yqlgeeamer
      181 fredegfike eekplprnef qrqvwlifey pessgsarai aivsvlvili siitfcletl
      241 pefrderemp mplppqsggl ngttgdsppm qppsslsdpf fiiettcviw ftfellvrff
      301 acpskpefsr nimniidiva iipyfitlgt elaheqqepr aggsnggggq qqamslailr
      361 virlvrvfri fklsrhskgl qilgqtlkas mrelglliff lfigvilfss avyfaeaddp
      421 eshfssipda fwwavvtmtt vgygdmrpvt vggkivgslc aiagvltial pvpvivsnfn
      481 yfyhretdhe eqavlkdehs saqgstaggd akrrnssrns lsksvvhlen segfnngtss
      541 lektnikaks ntdlrkslya lcldtnretd l
//
LOCUS       XP_009567538             571 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily A member 5 [Cuculus
            canorus].
ACCESSION   XP_009567538
VERSION     XP_009567538.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009569243.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567538.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..571
                     /product="potassium voltage-gated channel subfamily A
                     member 5"
                     /calculated_mol_wt=63122
     Region          88..214
                     /region_name="BTB_POZ"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; cl38908"
                     /db_xref="CDD:453885"
     Region          217..486
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..571
                     /gene="LOC104066617"
                     /coded_by="XM_009569243.2:139..1854"
                     /db_xref="GeneID:104066617"
ORIGIN      
        1 meialvtlgn ggatalagge dgaargdrls dgqerapqpp prrketsgap aaemgppeeg
       61 ghrrgmamaa ageeeeeavv nrgalhhqrv linisglrfe tqlgtlnqfp dtllgdpdkr
      121 iryfdplrne yffdrnrpsf dgilyfyqsg gklrrpvnvs idvfadeirf yqlgeeamer
      181 fredegfike eekplprnef qrqvwlifey pessgsarai aivsvlvili siitfcletl
      241 pefrderemp mplppqsggl ngttgdsppm qppsslsdpf fiiettcviw ftfellvrff
      301 acpskpefsr nimniidiva iipyfitlgt elaheqqepr aggsnggggq qqamslailr
      361 virlvrvfri fklsrhskgl qilgqtlkas mrelglliff lfigvilfss avyfaeaddp
      421 eshfssipda fwwavvtmtt vgygdmrpvt vggkivgslc aiagvltial pvpvivsnfn
      481 yfyhretdhe eqavlkdehs saqgstaggd akrrnssrns lsksvvhlen segfnngtss
      541 lektnikaks ntdlrkslya lcldtnretd l
//
LOCUS       XP_053906781             571 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily A member 5 [Cuculus
            canorus].
ACCESSION   XP_053906781
VERSION     XP_053906781.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050806.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..571
                     /product="potassium voltage-gated channel subfamily A
                     member 5"
                     /calculated_mol_wt=63122
     Region          88..214
                     /region_name="BTB_POZ"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; cl38908"
                     /db_xref="CDD:453885"
     Region          217..486
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     CDS             1..571
                     /gene="LOC104066617"
                     /coded_by="XM_054050806.1:139..1854"
                     /db_xref="GeneID:104066617"
ORIGIN      
        1 meialvtlgn ggatalagge dgaargdrls dgqerapqpp prrketsgap aaemgppeeg
       61 ghrrgmamaa ageeeeeavv nrgalhhqrv linisglrfe tqlgtlnqfp dtllgdpdkr
      121 iryfdplrne yffdrnrpsf dgilyfyqsg gklrrpvnvs idvfadeirf yqlgeeamer
      181 fredegfike eekplprnef qrqvwlifey pessgsarai aivsvlvili siitfcletl
      241 pefrderemp mplppqsggl ngttgdsppm qppsslsdpf fiiettcviw ftfellvrff
      301 acpskpefsr nimniidiva iipyfitlgt elaheqqepr aggsnggggq qqamslailr
      361 virlvrvfri fklsrhskgl qilgqtlkas mrelglliff lfigvilfss avyfaeaddp
      421 eshfssipda fwwavvtmtt vgygdmrpvt vggkivgslc aiagvltial pvpvivsnfn
      481 yfyhretdhe eqavlkdehs saqgstaggd akrrnssrns lsksvvhlen segfnngtss
      541 lektnikaks ntdlrkslya lcldtnretd l
//
LOCUS       XP_053906789             457 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: dipeptidyl peptidase 1 [Cuculus canorus].
ACCESSION   XP_053906789
VERSION     XP_053906789.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050814.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..457
                     /product="LOW QUALITY PROTEIN: dipeptidyl peptidase 1"
                     /calculated_mol_wt=51114
     Region          19..131
                     /region_name="CathepsinC_exc"
                     /note="Cathepsin C exclusion domain; pfam08773"
                     /db_xref="CDD:462598"
     Region          225..454
                     /region_name="Peptidase_C1A_CathepsinC"
                     /note="Cathepsin C; also known as Dipeptidyl Peptidase I
                     (DPPI), an atypical papain-like cysteine peptidase with
                     chloride dependency and dipeptidyl aminopeptidase
                     activity, resulting from its tetrameric structure which
                     limits substrate access. Each subunit of...; cd02621"
                     /db_xref="CDD:239112"
     Site            order(246,252,399,421)
                     /site_type="active"
                     /db_xref="CDD:239112"
     Site            order(288,290,293..294,296,298,303,306..307,339,344,346,
                     391,397)
                     /site_type="active"
                     /note="exclusion domain interface [active]"
                     /db_xref="CDD:239112"
     Site            order(296..297,367,397,400,447)
                     /site_type="active"
                     /note="S2 subsite [active]"
                     /db_xref="CDD:239112"
     CDS             1..457
                     /gene="CTSC"
                     /coded_by="XM_054050814.1:42..1415"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 1 base in 1 codon"
                     /db_xref="GeneID:104064198"
ORIGIN      
        1 maallpvvll alpaalradt pancsfadll gawelrvwra ggrhgncsqa gpverkvvvn
       61 lqkldvaqds lgnhgfftli ynqgfeivin dykwfaffky kkegqnvtsy cnetlpgwvh
      121 dvlghnwacf vgqkisssls dvhinelpsr kprerlsgrd vmcttfdfvs ainarqkswr
      181 atrykeyenf axeelarrag glysrasrpk papltpellk kvsslpeswd wrnvdgvnyv
      241 spvrnqgacg scyafssmgm leaririltn ntqkpvfspq qvvscsqysq gcdggfpyli
      301 agkyvqdfgv veedcfpyta qdspclfkrs cyhyytseyh yvggfyggcn ealmklelvm
      361 hgpmavafev ysdfmlykeg iyhhtglmdd fnpfeltnha vllvgygtdp ksgekfwivk
      421 nswgtswged gyfrirrgtd ecaiesiava atpipkl
//
LOCUS       XP_009554939             464 aa            linear   VRT 09-MAR-2023
DEFINITION  mitochondrial dynamics protein MID51 [Cuculus canorus].
ACCESSION   XP_009554939
VERSION     XP_009554939.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556644.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..464
                     /product="mitochondrial dynamics protein MID51"
                     /calculated_mol_wt=51562
     Region          192..341
                     /region_name="Mab-21"
                     /note="Mab-21 protein nucleotidyltransferase domain;
                     pfam03281"
                     /db_xref="CDD:460873"
     Region          360..447
                     /region_name="Mab-21_C"
                     /note="Mab-21 protein HhH/H2TH-like domain; pfam20266"
                     /db_xref="CDD:466416"
     CDS             1..464
                     /gene="MIEF1"
                     /coded_by="XM_009556644.2:140..1534"
                     /db_xref="GeneID:104055515"
ORIGIN      
        1 maaagqrkgk kddngigtai dfvlsnarlv lgvggaamlg iatlavkrmy draisapssp
       61 trlsqsgkrs weepnwlgss srlltqdmkt sisrslqnlp tdpsaadtdf frptkpkpsa
      121 krsqvelkks rlrlslqekl fayyrrkvai padeqarakq aavdicaelr sflraklpdm
      181 plrdmylsgs lyddlqvvta dhiqlivplm leqnlwscip gedtimnipg fylvrrenpe
      241 yfprgssywd rcvvggylsp kavadafekv vagsinwpai gslldyvirp aappadltle
      301 vqydperhlf idflpsltlg diilvakphr larndnlwrl slrpaetarl raldqcdsgc
      361 rclclkifka vcksnpalgh ltasqltnvi lhlseeesdw sqdmladrfl qalkwliryl
      421 eagvlpsaln pkvnlfselt peevdelgyt lysslsepev llqt
//
LOCUS       XP_053906814              70 aa            linear   VRT 09-MAR-2023
DEFINITION  MIEF1 upstream open reading frame protein-like [Cuculus canorus].
ACCESSION   XP_053906814
VERSION     XP_053906814.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050839.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..70
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..70
                     /product="MIEF1 upstream open reading frame protein-like"
                     /calculated_mol_wt=8183
     Region          7..64
                     /region_name="Complex1_LYR_MIEF1-MP"
                     /note="LYR (leucine-tyrosine-arginine) motif found in
                     mitochondrial elongation factor 1 microprotein (MIEF1-MP)
                     and similar proteins; cd20272"
                     /db_xref="CDD:380767"
     Site            order(7,10,13..14,17..18,21,25..27,30,32,36..39,57,60..61)
                     /site_type="other"
                     /note="trimer interface [polypeptide binding]"
                     /db_xref="CDD:380767"
     Site            order(42..44,46,50..51,54..55)
                     /site_type="other"
                     /note="phosphopantetheine binding site [chemical binding]"
                     /db_xref="CDD:380767"
     CDS             1..70
                     /gene="LOC128849347"
                     /coded_by="XM_054050839.1:162..374"
                     /db_xref="GeneID:128849347"
ORIGIN      
        1 maawsreavl slyrallrqg rklhytdqdf ylafirrefr knqglqqled kerqlekgqa
       61 flqsklgglv
//
LOCUS       XP_053906829            1335 aa            linear   VRT 09-MAR-2023
DEFINITION  adhesion G-protein coupled receptor G2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053906829
VERSION     XP_053906829.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050854.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1335
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1335
                     /product="adhesion G-protein coupled receptor G2 isoform
                     X1"
                     /calculated_mol_wt=147842
     Region          313..>661
                     /region_name="DUF5585"
                     /note="Family of unknown function (DUF5585); pfam17823"
                     /db_xref="CDD:465521"
     Region          888..932
                     /region_name="GPS"
                     /note="GPCR proteolysis site, GPS, motif; pfam01825"
                     /db_xref="CDD:460350"
     Region          947..1212
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          949..973
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          983..1004
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          1016..1038
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          1058..1074
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          1104..1127
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          1153..1173
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          1176..1201
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..1335
                     /gene="ADGRG2"
                     /coded_by="XM_054050854.1:156..4163"
                     /db_xref="GeneID:104063411"
ORIGIN      
        1 mvawgkqqcc vgriqdvflr frtvlavllf hlflatavkd qegflgqyka vfnaacedpw
       61 ilsprislrp lkefivcvhl klyssnspwt ayvytqetph snlsanrydl gltgdhgkls
      121 iwlfgnqint evrlhentwn rvciqwksed kemkvfinet kkvnnkldgk vnlpgkgkff
      181 lgcaklpgta tspdlgmtge lymfrmwdka nikrsrdced sgvirwrked wiynktveed
      241 nslpcvetta tlpderqite gsattisvmt seettetaea lhiagyyptv tpaeetilcn
      301 itpvcnfsvf cvgkaklqas eesntslnve iidnltsnnq vrkfiavpap tpqelrisef
      361 nktlqalses svmecsaenk sihcnfimkl teganisrlr ekaevtqlgq cccssqkhcs
      421 ltaeelqmyt iqvpshslwv plhhspslpk ntslksntsv sptmlftkqs ptvrplnppf
      481 rdtsfsgals tspntdpfse tsaistteas vsstsvtttl ssseslaqpt mptfpsiasn
      541 kyvtistpat ksvtnaafsi ktdvpylskp vtrispsvgy tkhsavsspe lppkhpvaip
      601 pietttkpaa qtdlstestq lvsdkniatt pilpltpfti tlsptvspvn rsisvshlpp
      661 tadvhhsrph gstgkilsat tyttsvytti nittaelivs kiendlaagk vepkdvermv
      721 sevskvltas qplpprisnr iiklvdyigl klnfsansad faspslalav vktnsirsnq
      781 msfavqdsad lqislgvnti ndlnslgsit lptslltnlp peeldlasri ifnffkkttv
      841 fqdlslknas lissvisssv anltirnlka nvtvtlqnik pnqdnstvrc vfwdfnkngr
      901 hggwsyegci vkesrvnetv cscnhltsfa vlmdlygntp lnptqelvlt fisyigcgls
      961 aiflsitlvt yiafekirrd ypskiliqlc aallllnlvf lldswialyd trglciavav
     1021 flhyfllvsf twmgleafhm ylalvkvfnt yvrkyilkfc ivgwglpavv vsivlavspd
     1081 nyglittgkv sinrpdefcw iknrvvfyit avgyfcvifl inismfivvl iqlcrikkkk
     1141 qlgaqrktsi qdlrsvaglt fllgitwgfa fftvnevfty lftifntlqg ffififycvt
     1201 kenvrkqwrr ylccgkfrla ensdwsrtat nglkkqtvnq gvssssnslq snsnstnstt
     1261 llmnndysvh angnghlcse kngvsfivqn gdvclhdfsg kqlvfqekdd tgtqksrisv
     1321 rrtskrgslt ftekm
//
LOCUS       XP_053906838            1334 aa            linear   VRT 09-MAR-2023
DEFINITION  adhesion G-protein coupled receptor G2 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053906838
VERSION     XP_053906838.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050863.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1334
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1334
                     /product="adhesion G-protein coupled receptor G2 isoform
                     X2"
                     /calculated_mol_wt=147770
     Region          312..>660
                     /region_name="DUF5585"
                     /note="Family of unknown function (DUF5585); pfam17823"
                     /db_xref="CDD:465521"
     Region          887..931
                     /region_name="GPS"
                     /note="GPCR proteolysis site, GPS, motif; pfam01825"
                     /db_xref="CDD:460350"
     Region          946..1211
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          948..972
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          982..1003
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          1015..1037
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          1057..1073
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          1103..1126
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          1152..1172
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          1175..1200
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..1334
                     /gene="ADGRG2"
                     /coded_by="XM_054050863.1:157..4161"
                     /db_xref="GeneID:104063411"
ORIGIN      
        1 mvawgkqqcc vgriqdvflr frtvlavllf hlflatavkd qegflgqyka vfnaacedpw
       61 ilsprislrp lkefivcvhl klyssnspwt ayvytqetph snlsanrydl gltgdhgkls
      121 iwlfgnqint evrlhentwn rvciqwksed kemkvfinet kkvnnkldgk vnlpgkgkff
      181 lgcaklpgta tspdlgmtge lymfrmwdka nikrsrdced sgvirwrked wiynktveed
      241 nslpcvetta tlpderqite gsattisvmt seettetaea lhiagyyptv tpeetilcni
      301 tpvcnfsvfc vgkaklqase esntslnvei idnltsnnqv rkfiavpapt pqelrisefn
      361 ktlqalsess vmecsaenks ihcnfimklt eganisrlre kaevtqlgqc ccssqkhcsl
      421 taeelqmyti qvpshslwvp lhhspslpkn tslksntsvs ptmlftkqsp tvrplnppfr
      481 dtsfsgalst spntdpfset saistteasv sstsvtttls sseslaqptm ptfpsiasnk
      541 yvtistpatk svtnaafsik tdvpylskpv trispsvgyt khsavsspel ppkhpvaipp
      601 ietttkpaaq tdlstestql vsdkniattp ilpltpftit lsptvspvnr sisvshlppt
      661 advhhsrphg stgkilsatt yttsvyttin ittaelivsk iendlaagkv epkdvermvs
      721 evskvltasq plpprisnri iklvdyiglk lnfsansadf aspslalavv ktnsirsnqm
      781 sfavqdsadl qislgvntin dlnslgsitl ptslltnlpp eeldlasrii fnffkkttvf
      841 qdlslknasl issvisssva nltirnlkan vtvtlqnikp nqdnstvrcv fwdfnkngrh
      901 ggwsyegciv kesrvnetvc scnhltsfav lmdlygntpl nptqelvltf isyigcglsa
      961 iflsitlvty iafekirrdy pskiliqlca allllnlvfl ldswialydt rglciavavf
     1021 lhyfllvsft wmgleafhmy lalvkvfnty vrkyilkfci vgwglpavvv sivlavspdn
     1081 yglittgkvs inrpdefcwi knrvvfyita vgyfcvifli nismfivvli qlcrikkkkq
     1141 lgaqrktsiq dlrsvagltf llgitwgfaf ftvnevftyl ftifntlqgf fififycvtk
     1201 envrkqwrry lccgkfrlae nsdwsrtatn glkkqtvnqg vssssnslqs nsnstnsttl
     1261 lmnndysvha ngnghlcsek ngvsfivqng dvclhdfsgk qlvfqekddt gtqksrisvr
     1321 rtskrgsltf tekm
//
LOCUS       XP_053906848            1334 aa            linear   VRT 09-MAR-2023
DEFINITION  adhesion G-protein coupled receptor G2 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053906848
VERSION     XP_053906848.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050873.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1334
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1334
                     /product="adhesion G-protein coupled receptor G2 isoform
                     X3"
                     /calculated_mol_wt=147712
     Region          312..>660
                     /region_name="DUF5585"
                     /note="Family of unknown function (DUF5585); pfam17823"
                     /db_xref="CDD:465521"
     Region          887..931
                     /region_name="GPS"
                     /note="GPCR proteolysis site, GPS, motif; pfam01825"
                     /db_xref="CDD:460350"
     Region          946..1211
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          948..972
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          982..1003
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          1015..1037
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          1057..1073
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          1103..1126
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          1152..1172
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          1175..1200
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..1334
                     /gene="ADGRG2"
                     /coded_by="XM_054050873.1:156..4160"
                     /db_xref="GeneID:104063411"
ORIGIN      
        1 mvawgkqqcc vgriqdvflr frtvlavllf hlflatavkd qegflgqyka vfnaacedpw
       61 ilsprislrp lkefivcvhl klyssnspwt ayvytqetph snlsanrydl gltgdhgkls
      121 iwlfgnqint evrlhentwn rvciqwksed kemkvfinet kkvnnkldgk vnlpgkgkff
      181 lgcaklpgta tspdlgmtge lymfrmwdka nikrsrdced sgvirwrked wiynktveed
      241 nslpcvetta tlpderqitg sattisvmts eettetaeal hiagyyptvt paeetilcni
      301 tpvcnfsvfc vgkaklqase esntslnvei idnltsnnqv rkfiavpapt pqelrisefn
      361 ktlqalsess vmecsaenks ihcnfimklt eganisrlre kaevtqlgqc ccssqkhcsl
      421 taeelqmyti qvpshslwvp lhhspslpkn tslksntsvs ptmlftkqsp tvrplnppfr
      481 dtsfsgalst spntdpfset saistteasv sstsvtttls sseslaqptm ptfpsiasnk
      541 yvtistpatk svtnaafsik tdvpylskpv trispsvgyt khsavsspel ppkhpvaipp
      601 ietttkpaaq tdlstestql vsdkniattp ilpltpftit lsptvspvnr sisvshlppt
      661 advhhsrphg stgkilsatt yttsvyttin ittaelivsk iendlaagkv epkdvermvs
      721 evskvltasq plpprisnri iklvdyiglk lnfsansadf aspslalavv ktnsirsnqm
      781 sfavqdsadl qislgvntin dlnslgsitl ptslltnlpp eeldlasrii fnffkkttvf
      841 qdlslknasl issvisssva nltirnlkan vtvtlqnikp nqdnstvrcv fwdfnkngrh
      901 ggwsyegciv kesrvnetvc scnhltsfav lmdlygntpl nptqelvltf isyigcglsa
      961 iflsitlvty iafekirrdy pskiliqlca allllnlvfl ldswialydt rglciavavf
     1021 lhyfllvsft wmgleafhmy lalvkvfnty vrkyilkfci vgwglpavvv sivlavspdn
     1081 yglittgkvs inrpdefcwi knrvvfyita vgyfcvifli nismfivvli qlcrikkkkq
     1141 lgaqrktsiq dlrsvagltf llgitwgfaf ftvnevftyl ftifntlqgf fififycvtk
     1201 envrkqwrry lccgkfrlae nsdwsrtatn glkkqtvnqg vssssnslqs nsnstnsttl
     1261 lmnndysvha ngnghlcsek ngvsfivqng dvclhdfsgk qlvfqekddt gtqksrisvr
     1321 rtskrgsltf tekm
//
LOCUS       XP_053906858            1333 aa            linear   VRT 09-MAR-2023
DEFINITION  adhesion G-protein coupled receptor G2 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053906858
VERSION     XP_053906858.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050883.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1333
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1333
                     /product="adhesion G-protein coupled receptor G2 isoform
                     X4"
                     /calculated_mol_wt=147641
     Region          311..>659
                     /region_name="DUF5585"
                     /note="Family of unknown function (DUF5585); pfam17823"
                     /db_xref="CDD:465521"
     Region          886..930
                     /region_name="GPS"
                     /note="GPCR proteolysis site, GPS, motif; pfam01825"
                     /db_xref="CDD:460350"
     Region          945..1210
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          947..971
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          981..1002
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          1014..1036
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          1056..1072
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          1102..1125
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          1151..1171
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          1174..1199
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..1333
                     /gene="ADGRG2"
                     /coded_by="XM_054050883.1:156..4157"
                     /db_xref="GeneID:104063411"
ORIGIN      
        1 mvawgkqqcc vgriqdvflr frtvlavllf hlflatavkd qegflgqyka vfnaacedpw
       61 ilsprislrp lkefivcvhl klyssnspwt ayvytqetph snlsanrydl gltgdhgkls
      121 iwlfgnqint evrlhentwn rvciqwksed kemkvfinet kkvnnkldgk vnlpgkgkff
      181 lgcaklpgta tspdlgmtge lymfrmwdka nikrsrdced sgvirwrked wiynktveed
      241 nslpcvetta tlpderqitg sattisvmts eettetaeal hiagyyptvt peetilcnit
      301 pvcnfsvfcv gkaklqasee sntslnveii dnltsnnqvr kfiavpaptp qelrisefnk
      361 tlqalsessv mecsaenksi hcnfimklte ganisrlrek aevtqlgqcc cssqkhcslt
      421 aeelqmytiq vpshslwvpl hhspslpknt slksntsvsp tmlftkqspt vrplnppfrd
      481 tsfsgalsts pntdpfsets aistteasvs stsvtttlss seslaqptmp tfpsiasnky
      541 vtistpatks vtnaafsikt dvpylskpvt rispsvgytk hsavsspelp pkhpvaippi
      601 etttkpaaqt dlstestqlv sdkniattpi lpltpftitl sptvspvnrs isvshlppta
      661 dvhhsrphgs tgkilsatty ttsvyttini ttaelivski endlaagkve pkdvermvse
      721 vskvltasqp lpprisnrii klvdyiglkl nfsansadfa spslalavvk tnsirsnqms
      781 favqdsadlq islgvntind lnslgsitlp tslltnlppe eldlasriif nffkkttvfq
      841 dlslknasli ssvisssvan ltirnlkanv tvtlqnikpn qdnstvrcvf wdfnkngrhg
      901 gwsyegcivk esrvnetvcs cnhltsfavl mdlygntpln ptqelvltfi syigcglsai
      961 flsitlvtyi afekirrdyp skiliqlcaa llllnlvfll dswialydtr glciavavfl
     1021 hyfllvsftw mgleafhmyl alvkvfntyv rkyilkfciv gwglpavvvs ivlavspdny
     1081 glittgkvsi nrpdefcwik nrvvfyitav gyfcviflin ismfivvliq lcrikkkkql
     1141 gaqrktsiqd lrsvagltfl lgitwgfaff tvnevftylf tifntlqgff ififycvtke
     1201 nvrkqwrryl ccgkfrlaen sdwsrtatng lkkqtvnqgv ssssnslqsn snstnsttll
     1261 mnndysvhan gnghlcsekn gvsfivqngd vclhdfsgkq lvfqekddtg tqksrisvrr
     1321 tskrgsltft ekm
//
LOCUS       XP_053906868            1310 aa            linear   VRT 09-MAR-2023
DEFINITION  adhesion G-protein coupled receptor G2 isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053906868
VERSION     XP_053906868.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050893.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1310
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1310
                     /product="adhesion G-protein coupled receptor G2 isoform
                     X5"
                     /calculated_mol_wt=145154
     Region          313..>661
                     /region_name="DUF5585"
                     /note="Family of unknown function (DUF5585); pfam17823"
                     /db_xref="CDD:465521"
     Region          888..932
                     /region_name="GPS"
                     /note="GPCR proteolysis site, GPS, motif; pfam01825"
                     /db_xref="CDD:460350"
     Region          947..1212
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          949..973
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          983..1004
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          1016..1038
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          1058..1074
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          1104..1127
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          1153..1173
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          1176..1201
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..1310
                     /gene="ADGRG2"
                     /coded_by="XM_054050893.1:157..4089"
                     /db_xref="GeneID:104063411"
ORIGIN      
        1 mvawgkqqcc vgriqdvflr frtvlavllf hlflatavkd qegflgqyka vfnaacedpw
       61 ilsprislrp lkefivcvhl klyssnspwt ayvytqetph snlsanrydl gltgdhgkls
      121 iwlfgnqint evrlhentwn rvciqwksed kemkvfinet kkvnnkldgk vnlpgkgkff
      181 lgcaklpgta tspdlgmtge lymfrmwdka nikrsrdced sgvirwrked wiynktveed
      241 nslpcvetta tlpderqite gsattisvmt seettetaea lhiagyyptv tpaeetilcn
      301 itpvcnfsvf cvgkaklqas eesntslnve iidnltsnnq vrkfiavpap tpqelrisef
      361 nktlqalses svmecsaenk sihcnfimkl teganisrlr ekaevtqlgq cccssqkhcs
      421 ltaeelqmyt iqvpshslwv plhhspslpk ntslksntsv sptmlftkqs ptvrplnppf
      481 rdtsfsgals tspntdpfse tsaistteas vsstsvtttl ssseslaqpt mptfpsiasn
      541 kyvtistpat ksvtnaafsi ktdvpylskp vtrispsvgy tkhsavsspe lppkhpvaip
      601 pietttkpaa qtdlstestq lvsdkniatt pilpltpfti tlsptvspvn rsisvshlpp
      661 tadvhhsrph gstgkilsat tyttsvytti nittaelivs kiendlaagk vepkdvermv
      721 sevskvltas qplpprisnr iiklvdyigl klnfsansad faspslalav vktnsirsnq
      781 msfavqdsad lqislgvnti ndlnslgsit lptslltnlp peeldlasri ifnffkkttv
      841 fqdlslknas lissvisssv anltirnlka nvtvtlqnik pnqdnstvrc vfwdfnkngr
      901 hggwsyegci vkesrvnetv cscnhltsfa vlmdlygntp lnptqelvlt fisyigcgls
      961 aiflsitlvt yiafekirrd ypskiliqlc aallllnlvf lldswialyd trglciavav
     1021 flhyfllvsf twmgleafhm ylalvkvfnt yvrkyilkfc ivgwglpavv vsivlavspd
     1081 nyglittgkv sinrpdefcw iknrvvfyit avgyfcvifl inismfivvl iqlcrikkkk
     1141 qlgaqrktsi qdlrsvaglt fllgitwgfa fftvnevfty lftifntlqg ffififycvt
     1201 kenvrkqwrr ylccgkfrla ensdwsrtat nglkkqtvnq gvssssnslq snsnstnstt
     1261 llmnndysvh angngkqlvf qekddtgtqk srisvrrtsk rgsltftekm
//
LOCUS       XP_053906878             721 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: X-ray radiation resistance-associated protein
            1 [Cuculus canorus].
ACCESSION   XP_053906878
VERSION     XP_053906878.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050903.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 2% of CDS bases
            frameshifts          :: corrected 4 indels
            internal stop codons :: corrected 6 genomic stop codons
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..721
                     /product="LOW QUALITY PROTEIN: X-ray radiation
                     resistance-associated protein 1"
                     /calculated_mol_wt=79890
     Region          56..>258
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          165..186
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          214..246
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          247..268
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     CDS             1..721
                     /gene="XRRA1"
                     /coded_by="XM_054050903.1:86..2251"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 4 bases in 3 codons;
                     deleted 1 base in 1 codon; substituted 6 bases at 6
                     genomic stop codons"
                     /db_xref="GeneID:104064204"
ORIGIN      
        1 mlepmniltp lsasqslqeh csqdgyttgl ykkgngnnya vncfparnil hvskegdtws
       61 tagkvalqkn vmtmgfiivp gsghwiltcr atpealtekg ttrktpqqrr kppesaslex
      121 ntednvldkl lldkeddfgk fdciavikaa enlltlepfw kfsglwelel slnrlrdlei
      181 tardflhlei gwegsdlsyn dlspediwtx lfqlkilhlt galdrlwslp ldlagswdsa
      241 clrfpalevl slddshlshp stfvslsclc ctangtewkq tvfckaqagq twwvadfqvr
      301 fekwqllspf sllclrfivi pvqqdkescg sapskvifny gsqehpllvi srerdpsafk
      361 slpapstcrd vcapfsdlkh yslafdkiad eagllpvaff mclkeltfht tlsapprtkl
      421 plltqflqhs lgiklvxqks laterwplsi plkatcrvts hlpevtkqll iletpxqtfl
      481 wkplpaavnv rdiaalrlvq llptirpgtp agqxlrevks dsrpppgppe ediasfflmq
      541 vrpaadasrp wlrpmaegrl eksexrqegs sqlvpexykg yeellsgdkd lhfiepagiq
      601 knvqvlyyil khpllyqdtk pqldsikpsw sslhhgrmpg pcaqttkaev legilmairn
      661 tstitevplv svfxrrkssp rayweaxrlm eefqevfeip vqpsvrlpgh cscscqgrew
      721 p
//
LOCUS       XP_009564804             639 aa            linear   VRT 09-MAR-2023
DEFINITION  prolyl 4-hydroxylase subunit alpha-3 [Cuculus canorus].
ACCESSION   XP_009564804
VERSION     XP_009564804.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566509.2
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564804.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..639
                     /product="prolyl 4-hydroxylase subunit alpha-3"
                     /calculated_mol_wt=69438
     Region          131..258
                     /region_name="P4Ha_N"
                     /note="Prolyl 4-Hydroxylase alpha-subunit, N-terminal
                     region; pfam08336"
                     /db_xref="CDD:462433"
     Region          451..623
                     /region_name="P4Hc"
                     /note="Prolyl 4-hydroxylase alpha subunit homologues;
                     smart00702"
                     /db_xref="CDD:214780"
     CDS             1..639
                     /gene="P4HA3"
                     /coded_by="XM_009566509.2:1..1920"
                     /db_xref="GeneID:104064206"
ORIGIN      
        1 meeegkqvlg algalealrl gvlkslgtlg alealvslga lglgvlrslg algalrlgvl
       61 kslgtlgilg alglprplga vralglgvlg algqgvlrpv galgplglga lglgalllll
      121 pppapaetyt amlsvrralg seghllrqlr aylreestrl rrlarfyekv ralhqdpeas
      181 vdnpllafsl ikrlhsdwpn vvysdeaten tqafhagfke vehelpgaed ldgaaqalmr
      241 lqdvyglsvk gmangifqra gtscpplysp grrvslsadd cfhvgkvayd tgdyyhsiaw
      301 leeavslfrr sygnwnpedr ssledaldhl afsyfmagni shalslskef lqydpsnrrv
      361 arnvvkykkl letgtvasav plqrpnstrl qsrdayeelc qrpgdqpase hlphlscsye
      421 tngspylllq pakkemvqir pyvalyhdfi sdaeaetikg lagpwlqrsv vasgekqqka
      481 eyrisksawl kdtadpvvqa leqriaavtg ldlrppyaey lqvvnyglgg hyephfdhat
      541 srksplyrmk sgnriatvmi ylsaveaggs tafiyanisv pvvknaalfw wnlrrngdgd
      601 gdtlhagcpv lagdkwvank wihehgqefr rpcsanpqd
//
LOCUS       XP_053906913             947 aa            linear   VRT 09-MAR-2023
DEFINITION  rho GTPase-activating protein 6 isoform X1 [Cuculus canorus].
ACCESSION   XP_053906913
VERSION     XP_053906913.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050938.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..947
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..947
                     /product="rho GTPase-activating protein 6 isoform X1"
                     /calculated_mol_wt=104910
     Region          <35..149
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          364..570
                     /region_name="RhoGAP_ARHGAP6"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain of ArhGAP6-like proteins. ArhGAP6
                     shows GAP activity towards RhoA, but not towards Cdc42 and
                     Rac1. ArhGAP6 is often deleted in microphthalmia with
                     linear skin defects syndrome (MLS)...; cd04376"
                     /db_xref="CDD:239841"
     Site            order(395,432,436,515,518..519,550)
                     /site_type="other"
                     /note="putative GTPase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:239841"
     Site            395
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239841"
     CDS             1..947
                     /gene="ARHGAP6"
                     /coded_by="XM_054050938.1:159..3002"
                     /db_xref="GeneID:104054886"
ORIGIN      
        1 msaqsllssv fscsspaaaa paakslskrr lrqtrsldpa iigredgega graprartpw
       61 esrgarsapp plgasfstps tplersppgs alfdeesprg krspgwelpf lartpsasal
      121 sgpansifss prrwlqqrkg qpsppgtrpd ayvvwksegd ftwnsmsgrs vrlksvpvqs
      181 lselerarlq evafyqlqqd cdlgcqitvp kdgqkrkksl rkkldslgke knrdkefipq
      241 afgmplsqvi andrayklkq dsqreeqkev sdfvafllpf gtkrqnkdls ssnsslssts
      301 etpnestspn tpepaprarr rgamsvdsit dlddnqsrll ealqlslpae aqskkekard
      361 kklslnpiyr qvprlvdscc qhlekhglqt vgifrvgssk krvrqlreef drgidvvlde
      421 ehsihdvaal lkeflrdmpd plltrelytp fintllldpd eqlstlqlli yllppcncdt
      481 lhrllqflst vahhaedttd kdgqeitgnk mtslnlatif gpnllhkqks tdkefsvqss
      541 araeestaii avvqkmieny ealfmvspdl qnevlislle tdpdvvdyll rrkasqsssp
      601 emlrsegsys mggrhsstds nkassgdvsp ydnnspvlse rslmamqeev arspdklykv
      661 peqytlvghl qpktrenssa sqpgkdvsed hfdiwgtwhs tlksgckdpa vagsygniye
      721 ssllrpgqcs lsqgnlamys prwqssssel dngrqvmrrs qttaaipecq ihpmgsrvcs
      781 npqievssrs sdlshskser hltlssvedl sdhdlnmgyl qstakpsyrk erppppypgp
      841 aktssaltqr ssvsstlhsl wrlhrhekss gtraaggpsa kapdqatfrq eqqtphtqag
      901 hicstaphsq nsknvseaew hewqrdrwqi wellsadntd alpetlv
//
LOCUS       XP_053906919             830 aa            linear   VRT 09-MAR-2023
DEFINITION  rho GTPase-activating protein 6 isoform X2 [Cuculus canorus].
ACCESSION   XP_053906919
VERSION     XP_053906919.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050944.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..830
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..830
                     /product="rho GTPase-activating protein 6 isoform X2"
                     /calculated_mol_wt=92706
     Region          247..453
                     /region_name="RhoGAP_ARHGAP6"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain of ArhGAP6-like proteins. ArhGAP6
                     shows GAP activity towards RhoA, but not towards Cdc42 and
                     Rac1. ArhGAP6 is often deleted in microphthalmia with
                     linear skin defects syndrome (MLS)...; cd04376"
                     /db_xref="CDD:239841"
     Site            order(278,315,319,398,401..402,433)
                     /site_type="other"
                     /note="putative GTPase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:239841"
     Site            278
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239841"
     CDS             1..830
                     /gene="ARHGAP6"
                     /coded_by="XM_054050944.1:435..2927"
                     /db_xref="GeneID:104054886"
ORIGIN      
        1 mswfpsgssa pevsswgcsm lwtvpamppc lqrsshlwys lgdftwnsms grsvrlksvp
       61 vqslselera rlqevafyql qqdcdlgcqi tvpkdgqkrk kslrkkldsl gkeknrdkef
      121 ipqafgmpls qviandrayk lkqdsqreeq kevsdfvafl lpfgtkrqnk dlsssnssls
      181 stsetpnest spntpepapr arrrgamsvd sitdlddnqs rllealqlsl paeaqskkek
      241 ardkklslnp iyrqvprlvd sccqhlekhg lqtvgifrvg sskkrvrqlr eefdrgidvv
      301 ldeehsihdv aallkeflrd mpdplltrel ytpfintlll dpdeqlstlq lliyllppcn
      361 cdtlhrllqf lstvahhaed ttdkdgqeit gnkmtslnla tifgpnllhk qkstdkefsv
      421 qssaraeest aiiavvqkmi enyealfmvs pdlqnevlis lletdpdvvd yllrrkasqs
      481 sspemlrseg sysmggrhss tdsnkassgd vspydnnspv lserslmamq eevarspdkl
      541 ykvpeqytlv ghlqpktren ssasqpgkdv sedhfdiwgt whstlksgck dpavagsygn
      601 iyessllrpg qcslsqgnla mysprwqsss seldngrqvm rrsqttaaip ecqihpmgsr
      661 vcsnpqievs srssdlshsk serhltlssv edlsdhdlnm gylqstakps yrkerppppy
      721 pgpaktssal tqrssvsstl hslwrlhrhe kssgtraagg psakapdqat frqeqqtpht
      781 qaghicstap hsqnsknvse aewhewqrdr wqiwellsad ntdalpetlv
//
LOCUS       XP_053906926             804 aa            linear   VRT 09-MAR-2023
DEFINITION  rho GTPase-activating protein 6 isoform X3 [Cuculus canorus].
ACCESSION   XP_053906926
VERSION     XP_053906926.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050951.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..804
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..804
                     /product="rho GTPase-activating protein 6 isoform X3"
                     /calculated_mol_wt=89759
     Region          221..427
                     /region_name="RhoGAP_ARHGAP6"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain of ArhGAP6-like proteins. ArhGAP6
                     shows GAP activity towards RhoA, but not towards Cdc42 and
                     Rac1. ArhGAP6 is often deleted in microphthalmia with
                     linear skin defects syndrome (MLS)...; cd04376"
                     /db_xref="CDD:239841"
     Site            order(252,289,293,372,375..376,407)
                     /site_type="other"
                     /note="putative GTPase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:239841"
     Site            252
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239841"
     CDS             1..804
                     /gene="ARHGAP6"
                     /coded_by="XM_054050951.1:122..2536"
                     /db_xref="GeneID:104054886"
ORIGIN      
        1 mgdsvfgekp alryagdftw nsmsgrsvrl ksvpvqslse lerarlqeva fyqlqqdcdl
       61 gcqitvpkdg qkrkkslrkk ldslgkeknr dkefipqafg mplsqviand rayklkqdsq
      121 reeqkevsdf vafllpfgtk rqnkdlsssn sslsstsetp nestspntpe paprarrrga
      181 msvdsitdld dnqsrlleal qlslpaeaqs kkekardkkl slnpiyrqvp rlvdsccqhl
      241 ekhglqtvgi frvgsskkrv rqlreefdrg idvvldeehs ihdvaallke flrdmpdpll
      301 trelytpfin tllldpdeql stlqlliyll ppcncdtlhr llqflstvah haedttdkdg
      361 qeitgnkmts lnlatifgpn llhkqkstdk efsvqssara eestaiiavv qkmienyeal
      421 fmvspdlqne vlislletdp dvvdyllrrk asqssspeml rsegsysmgg rhsstdsnka
      481 ssgdvspydn nspvlsersl mamqeevars pdklykvpeq ytlvghlqpk trenssasqp
      541 gkdvsedhfd iwgtwhstlk sgckdpavag sygniyessl lrpgqcslsq gnlamysprw
      601 qsssseldng rqvmrrsqtt aaipecqihp mgsrvcsnpq ievssrssdl shskserhlt
      661 lssvedlsdh dlnmgylqst akpsyrkerp pppypgpakt ssaltqrssv sstlhslwrl
      721 hrhekssgtr aaggpsakap dqatfrqeqq tphtqaghic staphsqnsk nvseaewhew
      781 qrdrwqiwel lsadntdalp etlv
//
LOCUS       XP_053906936             782 aa            linear   VRT 09-MAR-2023
DEFINITION  rho GTPase-activating protein 6 isoform X4 [Cuculus canorus].
ACCESSION   XP_053906936
VERSION     XP_053906936.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050961.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..782
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..782
                     /product="rho GTPase-activating protein 6 isoform X4"
                     /calculated_mol_wt=87328
     Region          199..405
                     /region_name="RhoGAP_ARHGAP6"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain of ArhGAP6-like proteins. ArhGAP6
                     shows GAP activity towards RhoA, but not towards Cdc42 and
                     Rac1. ArhGAP6 is often deleted in microphthalmia with
                     linear skin defects syndrome (MLS)...; cd04376"
                     /db_xref="CDD:239841"
     Site            order(230,267,271,350,353..354,385)
                     /site_type="other"
                     /note="putative GTPase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:239841"
     Site            230
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239841"
     CDS             1..782
                     /gene="ARHGAP6"
                     /coded_by="XM_054050961.1:165..2513"
                     /db_xref="GeneID:104054886"
ORIGIN      
        1 msgrsvrlks vpvqslsele rarlqevafy qlqqdcdlgc qitvpkdgqk rkkslrkkld
       61 slgkeknrdk efipqafgmp lsqviandra yklkqdsqre eqkevsdfva fllpfgtkrq
      121 nkdlsssnss lsstsetpne stspntpepa prarrrgams vdsitdlddn qsrllealql
      181 slpaeaqskk ekardkklsl npiyrqvprl vdsccqhlek hglqtvgifr vgsskkrvrq
      241 lreefdrgid vvldeehsih dvaallkefl rdmpdplltr elytpfintl lldpdeqlst
      301 lqlliyllpp cncdtlhrll qflstvahha edttdkdgqe itgnkmtsln latifgpnll
      361 hkqkstdkef svqssaraee staiiavvqk mienyealfm vspdlqnevl islletdpdv
      421 vdyllrrkas qssspemlrs egsysmggrh sstdsnkass gdvspydnns pvlserslma
      481 mqeevarspd klykvpeqyt lvghlqpktr enssasqpgk dvsedhfdiw gtwhstlksg
      541 ckdpavagsy gniyessllr pgqcslsqgn lamysprwqs ssseldngrq vmrrsqttaa
      601 ipecqihpmg srvcsnpqie vssrssdlsh skserhltls svedlsdhdl nmgylqstak
      661 psyrkerppp pypgpaktss altqrssvss tlhslwrlhr hekssgtraa ggpsakapdq
      721 atfrqeqqtp htqaghicst aphsqnsknv seaewhewqr drwqiwells adntdalpet
      781 lv
//
LOCUS       XP_053906944             782 aa            linear   VRT 09-MAR-2023
DEFINITION  rho GTPase-activating protein 6 isoform X4 [Cuculus canorus].
ACCESSION   XP_053906944
VERSION     XP_053906944.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050969.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..782
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..782
                     /product="rho GTPase-activating protein 6 isoform X4"
                     /calculated_mol_wt=87328
     Region          199..405
                     /region_name="RhoGAP_ARHGAP6"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain of ArhGAP6-like proteins. ArhGAP6
                     shows GAP activity towards RhoA, but not towards Cdc42 and
                     Rac1. ArhGAP6 is often deleted in microphthalmia with
                     linear skin defects syndrome (MLS)...; cd04376"
                     /db_xref="CDD:239841"
     Site            order(230,267,271,350,353..354,385)
                     /site_type="other"
                     /note="putative GTPase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:239841"
     Site            230
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239841"
     CDS             1..782
                     /gene="ARHGAP6"
                     /coded_by="XM_054050969.1:124..2472"
                     /db_xref="GeneID:104054886"
ORIGIN      
        1 msgrsvrlks vpvqslsele rarlqevafy qlqqdcdlgc qitvpkdgqk rkkslrkkld
       61 slgkeknrdk efipqafgmp lsqviandra yklkqdsqre eqkevsdfva fllpfgtkrq
      121 nkdlsssnss lsstsetpne stspntpepa prarrrgams vdsitdlddn qsrllealql
      181 slpaeaqskk ekardkklsl npiyrqvprl vdsccqhlek hglqtvgifr vgsskkrvrq
      241 lreefdrgid vvldeehsih dvaallkefl rdmpdplltr elytpfintl lldpdeqlst
      301 lqlliyllpp cncdtlhrll qflstvahha edttdkdgqe itgnkmtsln latifgpnll
      361 hkqkstdkef svqssaraee staiiavvqk mienyealfm vspdlqnevl islletdpdv
      421 vdyllrrkas qssspemlrs egsysmggrh sstdsnkass gdvspydnns pvlserslma
      481 mqeevarspd klykvpeqyt lvghlqpktr enssasqpgk dvsedhfdiw gtwhstlksg
      541 ckdpavagsy gniyessllr pgqcslsqgn lamysprwqs ssseldngrq vmrrsqttaa
      601 ipecqihpmg srvcsnpqie vssrssdlsh skserhltls svedlsdhdl nmgylqstak
      661 psyrkerppp pypgpaktss altqrssvss tlhslwrlhr hekssgtraa ggpsakapdq
      721 atfrqeqqtp htqaghicst aphsqnsknv seaewhewqr drwqiwells adntdalpet
      781 lv
//
LOCUS       XP_053906958            2596 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase WNK1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053906958
VERSION     XP_053906958.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050983.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2596
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2596
                     /product="serine/threonine-protein kinase WNK1 isoform X1"
                     /calculated_mol_wt=272683
     Region          198..486
                     /region_name="STKc_WNK1"
                     /note="Catalytic domain of the Serine/Threonine protein
                     kinase, With No Lysine (WNK) 1; cd14030"
                     /db_xref="CDD:270932"
     Site            order(230..234,236,238,251,253,284,304..307,311,313,352,
                     354,356..357,359,371,374,388..391)
                     /site_type="active"
                     /db_xref="CDD:270932"
     Site            order(230..234,236,238,251,253,284,304..307,311,352,354,
                     356..357,359,371)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270932"
     Site            order(234,311,313,352,354,356,374,388..391)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270932"
     Site            370..391
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270932"
     Region          503..566
                     /region_name="OSR1_C"
                     /note="Oxidative-stress-responsive kinase 1 C-terminal
                     domain; pfam12202"
                     /db_xref="CDD:463491"
     Region          <693..1246
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <1487..1789
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <1705..1980
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..2596
                     /gene="WNK1"
                     /coded_by="XM_054050983.1:446..8236"
                     /db_xref="GeneID:104055922"
ORIGIN      
        1 msgggadgst taprflvppp pppkngsssd ssvgeklgaa ehgtsgaggt sggagnesrs
       61 eeyrrrrhtm dkdsrgaaat ehrffrrsvi cdsnatalel pslqpsapvs ggsaaplvsp
      121 pecasrtssi aaggaaqasl lqqppppapl plegqsaqel paakdaslll pkeeedeatv
      181 lpptsvagsa savsrefeer rtqqedieel etkavgispd grflkfdiei grgsfktvyk
      241 gldtdttvev awcelqdrkl skserqrfke eagmlkglqh pnivrfydsw estvkgkkci
      301 vlvtelmtsg tlktylkrfk vmkikvlrsw crqilkglqf lhtrtppiih rdlkcdnifi
      361 tgptgsvkig dlglatlkra sfaksvigtp efmapemyee kydesvdvya fgmcmlemat
      421 seypysecqn aaqiyrrvts gvkpasfdkv aipevkeiie gcirqnkger yaikdllnha
      481 ffqeetgvrv elaeeddgek iaiklwlrie dikklkgkyk dneaiefsfd lerdvpedva
      541 qemvesgyvc egdhktmaka ikdrvslikr kreqrqlvre eqeknlqeeg sqkqqleqqq
      601 psgashagsk hpqsvtgttp vpatsasvst qvepeepead qhqqlqfqqp sisilsdgtv
      661 dsgqgssvyt esgvssqqtv sygsqhdqsi stpavqgyaa svgpvqsqqh ggyqppaapq
      721 hprggtptfp dsqiffptvh erpvsfsppp vcppkvavaq rrkstsflea qtchfqpllk
      781 tgqslvppgg sptnwtpeaf vmlgtaaqrv tgeplhvqvn pvfepapvhs dyrsgptppe
      841 dahyrmhpea vylvgmhyps qtqvqgqsas nspsvpsqpt qhtqqnvqqp assqqpgqyq
      901 lqqpsvsaga tppqtvsqtq tsqvmpvpqa aagtqlpvsq pvpiiqgepq lpvaapslpq
      961 psvapavpig shflpmgqpm ptsmvpqfsv sqlpvaaphv svaqpgfqsl pismaaginq
     1021 plltlatsaa aatvpvgstv vpsqlptlmq pvaqlpsqvl pqllqpavqs mglpvsigqa
     1081 aeaslpagda lyqgfpsqlp pqypgesnva pssavasvsv psavlspplp adamaqpgyl
     1141 apvvqpyveq svlvpmgslg ghvpvpppav slaqpassas aqqavleqnv mplwgpcchw
     1201 lfcwegtqga sqtapsetlp atqpaqstal assmdsahsd vasglsdgne nvpassgrhe
     1261 grttkrhmrr svrsrsrhek tarpklriln vsnkgdrvve cqlethnrkm vtfkfdldgd
     1321 npeeiasimv qnefilater dsfveqvrei iekademlse dvsaepeggq glesmqmkdd
     1381 gffpgsqkle fkqpdptssm pqrigvppss ftqvvhsagr rfivspvpes rlkeqgffts
     1441 pvpggkedmv aasplhgpgm nlshsassls lqqafsemnh aqmtegpsta ppvfnqtvpp
     1501 fppalatmag sgappasvat ssmsvpsstg vslpgsvtlp segaavgvap sasvpssvsp
     1561 ppasesgqql tgvsssvsap asfslptasq paqpvtgdia psistpssla lpstqvpgvt
     1621 glgvvapavt sqsapqivss maapqtaval slaqnvalql pqlsssgsvs nlsettvvsa
     1681 qqslpesgqs vdtsqlcnta glslpisapl sssvatsicg svaqpvmhpl lvpsgitstp
     1741 vlpqipgatp mlpqvplpgv lpqpvtnlpa vqqtlihsqp qpaplpnqph ihcleadada
     1801 qskapgiddi ktleeklrsl fsehgnvgtv hpsvsletsl vmettvipgi pttavaptkp
     1861 ltsistcipp sslplgptgl pvltpvatpg qvitpvsyis asssvatavv kpgtspskpp
     1921 lsrvpvlpvg selpagtpss eplppfpgps ltqsqqpled ldaklrrtls petvpgtsap
     1981 acsvpsvast tvtglvstgt qslkdasasc gaesgatatt agagvlkmgr fqvsvavddv
     2041 lkegdkpetk plqfdttstd ssslsgsspe stlvkqagsr kseavadssl dvvdgmprtv
     2101 pvlqlpvdvv qptkvgrfqv ttttdqvgrf svsktqdeis caekepmtlp lsvdleqvas
     2161 saaapkkele srqsphmngp ssepeatfls gmakdlddgs gspdslqpmg skislpvqsl
     2221 snsfnssyms sdnesdiede dlkselrrlr ekhlkeiqel qsrqkqeies lymklgkapp
     2281 aviippaapl sgrrrrptkg ksskssrsss qgnkspqlsg nlsaqsapsv lppqqtlhpp
     2341 ggvpetgqnh llqplkpsps senlysafts dgalsvpsls apgqgcakfn caservtfkp
     2401 ggrrtrflst pclalwkmvk kvcpcnqlcr tsstntvgat vssqapqsqp paiassrkgt
     2461 ftddlhklvd nwardamnls gkkvgkghss yegpgmarkf sapgqlcvsm tsslgatpis
     2521 assatslgpf tkamcppqqy gypaasfaap wsgtggpaqp plgqfqpvga aslqsfninn
     2581 lqksisnppg snlrtt
//
LOCUS       XP_053906968            2589 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase WNK1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053906968
VERSION     XP_053906968.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054050993.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2589
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2589
                     /product="serine/threonine-protein kinase WNK1 isoform X2"
                     /calculated_mol_wt=271968
     Region          198..486
                     /region_name="STKc_WNK1"
                     /note="Catalytic domain of the Serine/Threonine protein
                     kinase, With No Lysine (WNK) 1; cd14030"
                     /db_xref="CDD:270932"
     Site            order(230..234,236,238,251,253,284,304..307,311,313,352,
                     354,356..357,359,371,374,388..391)
                     /site_type="active"
                     /db_xref="CDD:270932"
     Site            order(230..234,236,238,251,253,284,304..307,311,352,354,
                     356..357,359,371)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270932"
     Site            order(234,311,313,352,354,356,374,388..391)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270932"
     Site            370..391
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270932"
     Region          503..566
                     /region_name="OSR1_C"
                     /note="Oxidative-stress-responsive kinase 1 C-terminal
                     domain; pfam12202"
                     /db_xref="CDD:463491"
     Region          <693..1246
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <1487..1789
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <1705..1980
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..2589
                     /gene="WNK1"
                     /coded_by="XM_054050993.1:446..8215"
                     /db_xref="GeneID:104055922"
ORIGIN      
        1 msgggadgst taprflvppp pppkngsssd ssvgeklgaa ehgtsgaggt sggagnesrs
       61 eeyrrrrhtm dkdsrgaaat ehrffrrsvi cdsnatalel pslqpsapvs ggsaaplvsp
      121 pecasrtssi aaggaaqasl lqqppppapl plegqsaqel paakdaslll pkeeedeatv
      181 lpptsvagsa savsrefeer rtqqedieel etkavgispd grflkfdiei grgsfktvyk
      241 gldtdttvev awcelqdrkl skserqrfke eagmlkglqh pnivrfydsw estvkgkkci
      301 vlvtelmtsg tlktylkrfk vmkikvlrsw crqilkglqf lhtrtppiih rdlkcdnifi
      361 tgptgsvkig dlglatlkra sfaksvigtp efmapemyee kydesvdvya fgmcmlemat
      421 seypysecqn aaqiyrrvts gvkpasfdkv aipevkeiie gcirqnkger yaikdllnha
      481 ffqeetgvrv elaeeddgek iaiklwlrie dikklkgkyk dneaiefsfd lerdvpedva
      541 qemvesgyvc egdhktmaka ikdrvslikr kreqrqlvre eqeknlqeeg sqkqqleqqq
      601 psgashagsk hpqsvtgttp vpatsasvst qvepeepead qhqqlqfqqp sisilsdgtv
      661 dsgqgssvyt esgvssqqtv sygsqhdqsi stpavqgyaa svgpvqsqqh ggyqppaapq
      721 hprggtptfp dsqiffptvh erpvsfsppp vcppkvavaq rrkstsflea qtchfqpllk
      781 tgqslvppgg sptnwtpeaf vmlgtaaqrv tgeplhvqvn pvfepapvhs dyrsgptppe
      841 dahyrmhpea vylvgmhyps qtqvqgqsas nspsvpsqpt qhtqqnvqqp assqqpgqyq
      901 lqqpsvsaga tppqtvsqtq tsqvmpvpqa aagtqlpvsq pvpiiqgepq lpvaapslpq
      961 psvapavpig shflpmgqpm ptsmvpqfsv sqlpvaaphv svaqpgfqsl pismaaginq
     1021 plltlatsaa aatvpvgstv vpsqlptlmq pvaqlpsqvl pqllqpavqs mglpvsigqa
     1081 aeaslpagda lyqgfpsqlp pqypgesnva pssavasvsv psavlspplp adamaqpgyl
     1141 apvvqpyveq svlvpmgslg ghvpvpppav slaqpassas aqqavleqnv mplwgpcchw
     1201 lfcwegtqga sqtapsetlp atqpaqstal assmdsahsd vasglsdgne nvpassgrhe
     1261 grttkrhmrr svrsrsrhek tarpklriln vsnkgdrvve cqlethnrkm vtfkfdldgd
     1321 npeeiasimv qnefilater dsfveqvrei iekademlse dvsaepeggq glesmqmkdd
     1381 gffpgsqkle fkqpdptssm pqrigvppss ftqvvhsagr rfivspvpes rlkeqgffts
     1441 pvpggkedmv aasplhgpgm nlshsassls lqqafsemnh aqmtegpsta ppvfnqtvpp
     1501 fppalatmag sgappasvat ssmsvpsstg vslpgsvtlp segaavgvap sasvpssvsp
     1561 ppasesgqql tgvsssvsap asfslptasq paqpvtgdia psistpssla lpstqvpgvt
     1621 glgvvapavt sqsapqivss maapqtaval slaqnvalql pqlsssgsvs nlsettvvsa
     1681 qqslpesgqs vdtsqlcnta glslpisapl sssvatsicg svaqpvmhpl lvpsgitstp
     1741 vlpqipgatp mlpqvplpgv lpqpvtnlpa vqqtlihsqp qpaplpnqph ihcleadada
     1801 qskapgiddi ktleeklrsl fsehgnvgtv hpsvsletsl vmettvipgi pttavaptkp
     1861 ltsistcipp sslplgptgl pvltpvatpg qvitpvsyis asssvatavv kpgtspskpp
     1921 lsrvpvlpvg selpagtpss eplppfpgps ltqsqqpled ldaklrrtls petvpgtsap
     1981 acsvpsvast tvtglvstgt qslkdasasc gaesgatatt agagvlkmgr fqvsvavddv
     2041 lkegdkpetk plqfdttstd ssslsgsspe stlvkqagsr kseavadssl dvvdgmprtv
     2101 pvlqlpvdvv qptkvgrfqv ttttdqvgrf svsktqdeis caekepmtlp lsvdleqvas
     2161 saaapkkele srqsphmngp ssepeatfls gmakdlddgs gspdslqpmg skislpvqsl
     2221 snsfnssyms sdnesdiede dlkselrrlr ekhlkeiqel qsrqkqeies lymklgkapp
     2281 aviippaapl sgrrrrptkg ksskssrsss qgnkspqlsg nlsaqsapsv lppqqtlhpp
     2341 ggvpetgqnh llqplkpsps senlysafts dgalsvpsls apgqgcakfn caservtfkp
     2401 ggrrtrflrk mvkkvcpcnq lcrtsstntv gatvssqapq sqppaiassr kgtftddlhk
     2461 lvdnwardam nlsgkkvgkg hssyegpgma rkfsapgqlc vsmtsslgat pisassatsl
     2521 gpftkamcpp qqygypaasf aapwsgtggp aqpplgqfqp vgaaslqsfn innlqksisn
     2581 ppgsnlrtt
//
LOCUS       XP_053906976            2582 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase WNK1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053906976
VERSION     XP_053906976.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051001.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2582
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2582
                     /product="serine/threonine-protein kinase WNK1 isoform X3"
                     /calculated_mol_wt=271051
     Region          198..486
                     /region_name="STKc_WNK1"
                     /note="Catalytic domain of the Serine/Threonine protein
                     kinase, With No Lysine (WNK) 1; cd14030"
                     /db_xref="CDD:270932"
     Site            order(230..234,236,238,251,253,284,304..307,311,313,352,
                     354,356..357,359,371,374,388..391)
                     /site_type="active"
                     /db_xref="CDD:270932"
     Site            order(230..234,236,238,251,253,284,304..307,311,352,354,
                     356..357,359,371)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270932"
     Site            order(234,311,313,352,354,356,374,388..391)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270932"
     Site            370..391
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270932"
     Region          503..566
                     /region_name="OSR1_C"
                     /note="Oxidative-stress-responsive kinase 1 C-terminal
                     domain; pfam12202"
                     /db_xref="CDD:463491"
     Region          <693..1246
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <1487..1789
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <1705..1980
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..2582
                     /gene="WNK1"
                     /coded_by="XM_054051001.1:446..8194"
                     /db_xref="GeneID:104055922"
ORIGIN      
        1 msgggadgst taprflvppp pppkngsssd ssvgeklgaa ehgtsgaggt sggagnesrs
       61 eeyrrrrhtm dkdsrgaaat ehrffrrsvi cdsnatalel pslqpsapvs ggsaaplvsp
      121 pecasrtssi aaggaaqasl lqqppppapl plegqsaqel paakdaslll pkeeedeatv
      181 lpptsvagsa savsrefeer rtqqedieel etkavgispd grflkfdiei grgsfktvyk
      241 gldtdttvev awcelqdrkl skserqrfke eagmlkglqh pnivrfydsw estvkgkkci
      301 vlvtelmtsg tlktylkrfk vmkikvlrsw crqilkglqf lhtrtppiih rdlkcdnifi
      361 tgptgsvkig dlglatlkra sfaksvigtp efmapemyee kydesvdvya fgmcmlemat
      421 seypysecqn aaqiyrrvts gvkpasfdkv aipevkeiie gcirqnkger yaikdllnha
      481 ffqeetgvrv elaeeddgek iaiklwlrie dikklkgkyk dneaiefsfd lerdvpedva
      541 qemvesgyvc egdhktmaka ikdrvslikr kreqrqlvre eqeknlqeeg sqkqqleqqq
      601 psgashagsk hpqsvtgttp vpatsasvst qvepeepead qhqqlqfqqp sisilsdgtv
      661 dsgqgssvyt esgvssqqtv sygsqhdqsi stpavqgyaa svgpvqsqqh ggyqppaapq
      721 hprggtptfp dsqiffptvh erpvsfsppp vcppkvavaq rrkstsflea qtchfqpllk
      781 tgqslvppgg sptnwtpeaf vmlgtaaqrv tgeplhvqvn pvfepapvhs dyrsgptppe
      841 dahyrmhpea vylvgmhyps qtqvqgqsas nspsvpsqpt qhtqqnvqqp assqqpgqyq
      901 lqqpsvsaga tppqtvsqtq tsqvmpvpqa aagtqlpvsq pvpiiqgepq lpvaapslpq
      961 psvapavpig shflpmgqpm ptsmvpqfsv sqlpvaaphv svaqpgfqsl pismaaginq
     1021 plltlatsaa aatvpvgstv vpsqlptlmq pvaqlpsqvl pqllqpavqs mglpvsigqa
     1081 aeaslpagda lyqgfpsqlp pqypgesnva pssavasvsv psavlspplp adamaqpgyl
     1141 apvvqpyveq svlvpmgslg ghvpvpppav slaqpassas aqqavleqnv mplwgpcchw
     1201 lfcwegtqga sqtapsetlp atqpaqstal assmdsahsd vasglsdgne nvpassgrhe
     1261 grttkrhmrr svrsrsrhek tarpklriln vsnkgdrvve cqlethnrkm vtfkfdldgd
     1321 npeeiasimv qnefilater dsfveqvrei iekademlse dvsaepeggq glesmqmkdd
     1381 gffpgsqkle fkqpdptssm pqrigvppss ftqvvhsagr rfivspvpes rlkeqgffts
     1441 pvpggkedmv aasplhgpgm nlshsassls lqqafsemnh aqmtegpsta ppvfnqtvpp
     1501 fppalatmag sgappasvat ssmsvpsstg vslpgsvtlp segaavgvap sasvpssvsp
     1561 ppasesgqql tgvsssvsap asfslptasq paqpvtgdia psistpssla lpstqvpgvt
     1621 glgvvapavt sqsapqivss maapqtaval slaqnvalql pqlsssgsvs nlsettvvsa
     1681 qqslpesgqs vdtsqlcnta glslpisapl sssvatsicg svaqpvmhpl lvpsgitstp
     1741 vlpqipgatp mlpqvplpgv lpqpvtnlpa vqqtlihsqp qpaplpnqph ihcleadada
     1801 qskapgiddi ktleeklrsl fsehgnvgtv hpsvsletsl vmettvipgi pttavaptkp
     1861 ltsistcipp sslplgptgl pvltpvatpg qvitpvsyis asssvatavv kpgtspskpp
     1921 lsrvpvlpvg selpagtpss eplppfpgps ltqsqqpled ldaklrrtls petvpgtsap
     1981 acsvpsvast tvtglvstgt qslkdasasc gaesgatatt agagvlkmgr fqvsvavddv
     2041 lkegdkpetk plqfdttstd ssslsgsspe stlvkqagsr kseavadssl dvvdgmprtv
     2101 pvlqlpvdvv qptkvgrfqv ttttdqvgrf svsktqdeis caekepmtlp lsvdleqvas
     2161 saaapkkele srqsphmngp ssepeatfls gmakdlddgs gspdslqpmg skislpvqsl
     2221 snsfnssyms sdnesdiede dlkselrrlr ekhlkeiqel qsrqkqeies lymklgkapp
     2281 aviippaapl sgrrrrptkg ksskssrsss qgnkspqlsg nlsaqsapsv lppqqtlhpp
     2341 ggvpetgqnh llqplkpsps senlysafts dgalsvpsls apgqgcakfn caservtfkp
     2401 ggrrtrflst pclalwtsst ntvgatvssq apqsqppaia ssrkgtftdd lhklvdnwar
     2461 damnlsgkkv gkghssyegp gmarkfsapg qlcvsmtssl gatpisassa tslgpftkam
     2521 cppqqygypa asfaapwsgt ggpaqpplgq fqpvgaaslq sfninnlqks isnppgsnlr
     2581 tt
//
LOCUS       XP_053906978            2578 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase WNK1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053906978
VERSION     XP_053906978.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051003.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2578
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2578
                     /product="serine/threonine-protein kinase WNK1 isoform X4"
                     /calculated_mol_wt=270452
     Region          198..486
                     /region_name="STKc_WNK1"
                     /note="Catalytic domain of the Serine/Threonine protein
                     kinase, With No Lysine (WNK) 1; cd14030"
                     /db_xref="CDD:270932"
     Site            order(230..234,236,238,251,253,284,304..307,311,313,352,
                     354,356..357,359,371,374,388..391)
                     /site_type="active"
                     /db_xref="CDD:270932"
     Site            order(230..234,236,238,251,253,284,304..307,311,352,354,
                     356..357,359,371)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270932"
     Site            order(234,311,313,352,354,356,374,388..391)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270932"
     Site            370..391
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270932"
     Region          503..566
                     /region_name="OSR1_C"
                     /note="Oxidative-stress-responsive kinase 1 C-terminal
                     domain; pfam12202"
                     /db_xref="CDD:463491"
     Region          <693..1228
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <1469..1771
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <1687..1962
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..2578
                     /gene="WNK1"
                     /coded_by="XM_054051003.1:446..8182"
                     /db_xref="GeneID:104055922"
ORIGIN      
        1 msgggadgst taprflvppp pppkngsssd ssvgeklgaa ehgtsgaggt sggagnesrs
       61 eeyrrrrhtm dkdsrgaaat ehrffrrsvi cdsnatalel pslqpsapvs ggsaaplvsp
      121 pecasrtssi aaggaaqasl lqqppppapl plegqsaqel paakdaslll pkeeedeatv
      181 lpptsvagsa savsrefeer rtqqedieel etkavgispd grflkfdiei grgsfktvyk
      241 gldtdttvev awcelqdrkl skserqrfke eagmlkglqh pnivrfydsw estvkgkkci
      301 vlvtelmtsg tlktylkrfk vmkikvlrsw crqilkglqf lhtrtppiih rdlkcdnifi
      361 tgptgsvkig dlglatlkra sfaksvigtp efmapemyee kydesvdvya fgmcmlemat
      421 seypysecqn aaqiyrrvts gvkpasfdkv aipevkeiie gcirqnkger yaikdllnha
      481 ffqeetgvrv elaeeddgek iaiklwlrie dikklkgkyk dneaiefsfd lerdvpedva
      541 qemvesgyvc egdhktmaka ikdrvslikr kreqrqlvre eqeknlqeeg sqkqqleqqq
      601 psgashagsk hpqsvtgttp vpatsasvst qvepeepead qhqqlqfqqp sisilsdgtv
      661 dsgqgssvyt esgvssqqtv sygsqhdqsi stpavqgyaa svgpvqsqqh ggyqppaapq
      721 hprggtptfp dsqiffptvh erpvsfsppp vcppkvavaq rrkstsflea qtchfqpllk
      781 tgqslvppgg sptnwtpeaf vmlgtaaqrv tgeplhvqvn pvfepapvhs dyrsgptppe
      841 dahyrmhpea vylvgmhyps qtqvqgqsas nspsvpsqpt qhtqqnvqqp assqqpgqyq
      901 lqqpsvsaga tppqtvsqtq tsqvmpvpqa aagtqlpvsq pvpiiqgepq lpvaapslpq
      961 psvapavpig shflpmgqpm ptsmvpqfsv sqlpvaaphv svaqpgfqsl pismaaginq
     1021 plltlatsaa aatvpvgstv vpsqlptlmq pvaqlpsqvl pqllqpavqs mglpvsigqa
     1081 aeaslpagda lyqgfpsqlp pqypgesnva pssavasvsv psavlspplp adamaqpgyl
     1141 apvvqpyveq svlvpmgslg ghvpvpppav slaqpassas aqqavlegtq gasqtapset
     1201 lpatqpaqst alassmdsah sdvasglsdg nenvpassgr hegrttkrhm rrsvrsrsrh
     1261 ektarpklri lnvsnkgdrv vecqlethnr kmvtfkfdld gdnpeeiasi mvqnefilat
     1321 erdsfveqvr eiiekademl sedvsaepeg gqglesmqmk ddgffpgsqk lefkqpdpts
     1381 smpqrigvpp ssftqvvhsa grrfivspvp esrlkeqgff tspvpggked mvaasplhgp
     1441 gmnlshsass lslqqafsem nhaqmtegps tappvfnqtv ppfppalatm agsgappasv
     1501 atssmsvpss tgvslpgsvt lpsegaavgv apsasvpssv spppasesgq qltgvsssvs
     1561 apasfslpta sqpaqpvtgd iapsistpss lalpstqvpg vtglgvvapa vtsqsapqiv
     1621 ssmaapqtav alslaqnval qlpqlsssgs vsnlsettvv saqqslpesg qsvdtsqlcn
     1681 taglslpisa plsssvatsi cgsvaqpvmh pllvpsgits tpvlpqipga tpmlpqvplp
     1741 gvlpqpvtnl pavqqtlihs qpqpaplpnq phihcleada daqskapgid diktleeklr
     1801 slfsehgnvg tvhpsvslet slvmettvip gipttavapt kpltsistci ppsslplgpt
     1861 glpvltpvat pgqvitpvsy isasssvata vvkpgtspsk pplsrvpvlp vgselpagtp
     1921 sseplppfpg psltqsqqpl edldaklrrt lspetvpgts apacsvpsva sttvtglvst
     1981 gtqslkdasa scgaesgata ttagagvlkm grfqvsvavd dvlkegdkpe tkplqfdtts
     2041 tdssslsgss pestlvkqag srkseavads sldvvdgmpr tvpvlqlpvd vvqptkvgrf
     2101 qvttttdqvg rfsvsktqde iscaekepmt lplsvdleqv assaaapkke lesrqsphmn
     2161 gpssepeatf lsgmakdldd gsgspdslqp mgskislpvq slsnsfnssy mssdnesdie
     2221 dedlkselrr lrekhlkeiq elqsrqkqei eslymklgka ppaviippaa plsgrrrrpt
     2281 kgksskssrs ssqgnkspql sgnlsaqsap svlppqqtlh ppggvpetgq nhllqplkps
     2341 pssenlysaf tsdgalsvps lsapgqgcak fncaservtf kpggrrtrfl stpclalwkm
     2401 vkkvcpcnql crtsstntvg atvssqapqs qppaiassrk gtftddlhkl vdnwardamn
     2461 lsgkkvgkgh ssyegpgmar kfsapgqlcv smtsslgatp isassatslg pftkamcppq
     2521 qygypaasfa apwsgtggpa qpplgqfqpv gaaslqsfni nnlqksisnp pgsnlrtt
//
LOCUS       XP_053906984            2575 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase WNK1 isoform X5 [Cuculus canorus].
ACCESSION   XP_053906984
VERSION     XP_053906984.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051009.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2575
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2575
                     /product="serine/threonine-protein kinase WNK1 isoform X5"
                     /calculated_mol_wt=270335
     Region          198..486
                     /region_name="STKc_WNK1"
                     /note="Catalytic domain of the Serine/Threonine protein
                     kinase, With No Lysine (WNK) 1; cd14030"
                     /db_xref="CDD:270932"
     Site            order(230..234,236,238,251,253,284,304..307,311,313,352,
                     354,356..357,359,371,374,388..391)
                     /site_type="active"
                     /db_xref="CDD:270932"
     Site            order(230..234,236,238,251,253,284,304..307,311,352,354,
                     356..357,359,371)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270932"
     Site            order(234,311,313,352,354,356,374,388..391)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270932"
     Site            370..391
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270932"
     Region          503..566
                     /region_name="OSR1_C"
                     /note="Oxidative-stress-responsive kinase 1 C-terminal
                     domain; pfam12202"
                     /db_xref="CDD:463491"
     Region          <693..1246
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <1487..1789
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <1705..1980
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..2575
                     /gene="WNK1"
                     /coded_by="XM_054051009.1:446..8173"
                     /db_xref="GeneID:104055922"
ORIGIN      
        1 msgggadgst taprflvppp pppkngsssd ssvgeklgaa ehgtsgaggt sggagnesrs
       61 eeyrrrrhtm dkdsrgaaat ehrffrrsvi cdsnatalel pslqpsapvs ggsaaplvsp
      121 pecasrtssi aaggaaqasl lqqppppapl plegqsaqel paakdaslll pkeeedeatv
      181 lpptsvagsa savsrefeer rtqqedieel etkavgispd grflkfdiei grgsfktvyk
      241 gldtdttvev awcelqdrkl skserqrfke eagmlkglqh pnivrfydsw estvkgkkci
      301 vlvtelmtsg tlktylkrfk vmkikvlrsw crqilkglqf lhtrtppiih rdlkcdnifi
      361 tgptgsvkig dlglatlkra sfaksvigtp efmapemyee kydesvdvya fgmcmlemat
      421 seypysecqn aaqiyrrvts gvkpasfdkv aipevkeiie gcirqnkger yaikdllnha
      481 ffqeetgvrv elaeeddgek iaiklwlrie dikklkgkyk dneaiefsfd lerdvpedva
      541 qemvesgyvc egdhktmaka ikdrvslikr kreqrqlvre eqeknlqeeg sqkqqleqqq
      601 psgashagsk hpqsvtgttp vpatsasvst qvepeepead qhqqlqfqqp sisilsdgtv
      661 dsgqgssvyt esgvssqqtv sygsqhdqsi stpavqgyaa svgpvqsqqh ggyqppaapq
      721 hprggtptfp dsqiffptvh erpvsfsppp vcppkvavaq rrkstsflea qtchfqpllk
      781 tgqslvppgg sptnwtpeaf vmlgtaaqrv tgeplhvqvn pvfepapvhs dyrsgptppe
      841 dahyrmhpea vylvgmhyps qtqvqgqsas nspsvpsqpt qhtqqnvqqp assqqpgqyq
      901 lqqpsvsaga tppqtvsqtq tsqvmpvpqa aagtqlpvsq pvpiiqgepq lpvaapslpq
      961 psvapavpig shflpmgqpm ptsmvpqfsv sqlpvaaphv svaqpgfqsl pismaaginq
     1021 plltlatsaa aatvpvgstv vpsqlptlmq pvaqlpsqvl pqllqpavqs mglpvsigqa
     1081 aeaslpagda lyqgfpsqlp pqypgesnva pssavasvsv psavlspplp adamaqpgyl
     1141 apvvqpyveq svlvpmgslg ghvpvpppav slaqpassas aqqavleqnv mplwgpcchw
     1201 lfcwegtqga sqtapsetlp atqpaqstal assmdsahsd vasglsdgne nvpassgrhe
     1261 grttkrhmrr svrsrsrhek tarpklriln vsnkgdrvve cqlethnrkm vtfkfdldgd
     1321 npeeiasimv qnefilater dsfveqvrei iekademlse dvsaepeggq glesmqmkdd
     1381 gffpgsqkle fkqpdptssm pqrigvppss ftqvvhsagr rfivspvpes rlkeqgffts
     1441 pvpggkedmv aasplhgpgm nlshsassls lqqafsemnh aqmtegpsta ppvfnqtvpp
     1501 fppalatmag sgappasvat ssmsvpsstg vslpgsvtlp segaavgvap sasvpssvsp
     1561 ppasesgqql tgvsssvsap asfslptasq paqpvtgdia psistpssla lpstqvpgvt
     1621 glgvvapavt sqsapqivss maapqtaval slaqnvalql pqlsssgsvs nlsettvvsa
     1681 qqslpesgqs vdtsqlcnta glslpisapl sssvatsicg svaqpvmhpl lvpsgitstp
     1741 vlpqipgatp mlpqvplpgv lpqpvtnlpa vqqtlihsqp qpaplpnqph ihcleadada
     1801 qskapgiddi ktleeklrsl fsehgnvgtv hpsvsletsl vmettvipgi pttavaptkp
     1861 ltsistcipp sslplgptgl pvltpvatpg qvitpvsyis asssvatavv kpgtspskpp
     1921 lsrvpvlpvg selpagtpss eplppfpgps ltqsqqpled ldaklrrtls petvpgtsap
     1981 acsvpsvast tvtglvstgt qslkdasasc gaesgatatt agagvlkmgr fqvsvavddv
     2041 lkegdkpetk plqfdttstd ssslsgsspe stlvkqagsr kseavadssl dvvdgmprtv
     2101 pvlqlpvdvv qptkvgrfqv ttttdqvgrf svsktqdeis caekepmtlp lsvdleqvas
     2161 saaapkkele srqsphmngp ssepeatfls gmakdlddgs gspdslqpmg skislpvqsl
     2221 snsfnssyms sdnesdiede dlkselrrlr ekhlkeiqel qsrqkqeies lymklgkapp
     2281 aviippaapl sgrrrrptkg ksskssrsss qgnkspqlsg nlsaqsapsv lppqqtlhpp
     2341 ggvpetgqnh llqplkpsps senlysafts dgalsvpsls apgqgcakfn caservtfkp
     2401 ggrrtrflrt sstntvgatv ssqapqsqpp aiassrkgtf tddlhklvdn wardamnlsg
     2461 kkvgkghssy egpgmarkfs apgqlcvsmt sslgatpisa ssatslgpft kamcppqqyg
     2521 ypaasfaapw sgtggpaqpp lgqfqpvgaa slqsfninnl qksisnppgs nlrtt
//
LOCUS       XP_053906992            2568 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase WNK1 isoform X6 [Cuculus canorus].
ACCESSION   XP_053906992
VERSION     XP_053906992.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051017.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2568
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2568
                     /product="serine/threonine-protein kinase WNK1 isoform X6"
                     /calculated_mol_wt=269929
     Region          198..486
                     /region_name="STKc_WNK1"
                     /note="Catalytic domain of the Serine/Threonine protein
                     kinase, With No Lysine (WNK) 1; cd14030"
                     /db_xref="CDD:270932"
     Site            order(230..234,236,238,251,253,284,304..307,311,313,352,
                     354,356..357,359,371,374,388..391)
                     /site_type="active"
                     /db_xref="CDD:270932"
     Site            order(230..234,236,238,251,253,284,304..307,311,352,354,
                     356..357,359,371)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270932"
     Site            order(234,311,313,352,354,356,374,388..391)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270932"
     Site            370..391
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270932"
     Region          503..566
                     /region_name="OSR1_C"
                     /note="Oxidative-stress-responsive kinase 1 C-terminal
                     domain; pfam12202"
                     /db_xref="CDD:463491"
     Region          <693..1246
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <1487..1789
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <1696..>1984
                     /region_name="PRK10263"
                     /note="DNA translocase FtsK; Provisional"
                     /db_xref="CDD:236669"
     CDS             1..2568
                     /gene="WNK1"
                     /coded_by="XM_054051017.1:448..8154"
                     /db_xref="GeneID:104055922"
ORIGIN      
        1 msgggadgst taprflvppp pppkngsssd ssvgeklgaa ehgtsgaggt sggagnesrs
       61 eeyrrrrhtm dkdsrgaaat ehrffrrsvi cdsnatalel pslqpsapvs ggsaaplvsp
      121 pecasrtssi aaggaaqasl lqqppppapl plegqsaqel paakdaslll pkeeedeatv
      181 lpptsvagsa savsrefeer rtqqedieel etkavgispd grflkfdiei grgsfktvyk
      241 gldtdttvev awcelqdrkl skserqrfke eagmlkglqh pnivrfydsw estvkgkkci
      301 vlvtelmtsg tlktylkrfk vmkikvlrsw crqilkglqf lhtrtppiih rdlkcdnifi
      361 tgptgsvkig dlglatlkra sfaksvigtp efmapemyee kydesvdvya fgmcmlemat
      421 seypysecqn aaqiyrrvts gvkpasfdkv aipevkeiie gcirqnkger yaikdllnha
      481 ffqeetgvrv elaeeddgek iaiklwlrie dikklkgkyk dneaiefsfd lerdvpedva
      541 qemvesgyvc egdhktmaka ikdrvslikr kreqrqlvre eqeknlqeeg sqkqqleqqq
      601 psgashagsk hpqsvtgttp vpatsasvst qvepeepead qhqqlqfqqp sisilsdgtv
      661 dsgqgssvyt esgvssqqtv sygsqhdqsi stpavqgyaa svgpvqsqqh ggyqppaapq
      721 hprggtptfp dsqiffptvh erpvsfsppp vcppkvavaq rrkstsflea qtchfqpllk
      781 tgqslvppgg sptnwtpeaf vmlgtaaqrv tgeplhvqvn pvfepapvhs dyrsgptppe
      841 dahyrmhpea vylvgmhyps qtqvqgqsas nspsvpsqpt qhtqqnvqqp assqqpgqyq
      901 lqqpsvsaga tppqtvsqtq tsqvmpvpqa aagtqlpvsq pvpiiqgepq lpvaapslpq
      961 psvapavpig shflpmgqpm ptsmvpqfsv sqlpvaaphv svaqpgfqsl pismaaginq
     1021 plltlatsaa aatvpvgstv vpsqlptlmq pvaqlpsqvl pqllqpavqs mglpvsigqa
     1081 aeaslpagda lyqgfpsqlp pqypgesnva pssavasvsv psavlspplp adamaqpgyl
     1141 apvvqpyveq svlvpmgslg ghvpvpppav slaqpassas aqqavleqnv mplwgpcchw
     1201 lfcwegtqga sqtapsetlp atqpaqstal assmdsahsd vasglsdgne nvpassgrhe
     1261 grttkrhmrr svrsrsrhek tarpklriln vsnkgdrvve cqlethnrkm vtfkfdldgd
     1321 npeeiasimv qnefilater dsfveqvrei iekademlse dvsaepeggq glesmqmkdd
     1381 gffpgsqkle fkqpdptssm pqrigvppss ftqvvhsagr rfivspvpes rlkeqgffts
     1441 pvpggkedmv aasplhgpgm nlshsassls lqqafsemnh aqmtegpsta ppvfnqtvpp
     1501 fppalatmag sgappasvat ssmsvpsstg vslpgsvtlp segaavgvap sasvpssvsp
     1561 ppasesgqql tgvsssvsap asfslptasq paqpvtgdia psistpssla lpstqvpgvt
     1621 glgvvapavt sqsapqivss maapqtaval slaqnvalql pqlsssgsvs nlsettvvsa
     1681 qqslpesgqs vdtsqlcnta glslpisapl sssvatsicg svaqpvmhpl lvpsgitstp
     1741 vlpqipgatp mlpqvplpgv lpqpvtnlpa vqqtlihsqp qpaplpnqph ihcleadada
     1801 qskapgiddi ktleeklrsl fsehgnvgtv hpsvsletsl vmettvipgi pttavaptkp
     1861 ltsistcipp sslplgptgl pvltpvatpg qvitpvsyis asssvatavv kpgtspskpp
     1921 lsrvpsqqpl edldaklrrt lspetvpgts apacsvpsva sttvtglvst gtqslkdasa
     1981 scgaesgata ttagagvlkm grfqvsvavd dvlkegdkpe tkplqfdtts tdssslsgss
     2041 pestlvkqag srkseavads sldvvdgmpr tvpvlqlpvd vvqptkvgrf qvttttdqvg
     2101 rfsvsktqde iscaekepmt lplsvdleqv assaaapkke lesrqsphmn gpssepeatf
     2161 lsgmakdldd gsgspdslqp mgskislpvq slsnsfnssy mssdnesdie dedlkselrr
     2221 lrekhlkeiq elqsrqkqei eslymklgka ppaviippaa plsgrrrrpt kgksskssrs
     2281 ssqgnkspql sgnlsaqsap svlppqqtlh ppggvpetgq nhllqplkps pssenlysaf
     2341 tsdgalsvps lsapgqgcak fncaservtf kpggrrtrfl stpclalwkm vkkvcpcnql
     2401 crtsstntvg atvssqapqs qppaiassrk gtftddlhkl vdnwardamn lsgkkvgkgh
     2461 ssyegpgmar kfsapgqlcv smtsslgatp isassatslg pftkamcppq qygypaasfa
     2521 apwsgtggpa qpplgqfqpv gaaslqsfni nnlqksisnp pgsnlrtt
//
LOCUS       XP_053906999            2551 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase WNK1 isoform X7 [Cuculus canorus].
ACCESSION   XP_053906999
VERSION     XP_053906999.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051024.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2551
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2551
                     /product="serine/threonine-protein kinase WNK1 isoform X7"
                     /calculated_mol_wt=267552
     Region          198..486
                     /region_name="STKc_WNK1"
                     /note="Catalytic domain of the Serine/Threonine protein
                     kinase, With No Lysine (WNK) 1; cd14030"
                     /db_xref="CDD:270932"
     Site            order(230..234,236,238,251,253,284,304..307,311,313,352,
                     354,356..357,359,371,374,388..391)
                     /site_type="active"
                     /db_xref="CDD:270932"
     Site            order(230..234,236,238,251,253,284,304..307,311,352,354,
                     356..357,359,371)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270932"
     Site            order(234,311,313,352,354,356,374,388..391)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270932"
     Site            370..391
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270932"
     Region          503..566
                     /region_name="OSR1_C"
                     /note="Oxidative-stress-responsive kinase 1 C-terminal
                     domain; pfam12202"
                     /db_xref="CDD:463491"
     Region          <693..1246
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <1487..1789
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <1705..1980
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..2551
                     /gene="WNK1"
                     /coded_by="XM_054051024.1:446..8101"
                     /db_xref="GeneID:104055922"
ORIGIN      
        1 msgggadgst taprflvppp pppkngsssd ssvgeklgaa ehgtsgaggt sggagnesrs
       61 eeyrrrrhtm dkdsrgaaat ehrffrrsvi cdsnatalel pslqpsapvs ggsaaplvsp
      121 pecasrtssi aaggaaqasl lqqppppapl plegqsaqel paakdaslll pkeeedeatv
      181 lpptsvagsa savsrefeer rtqqedieel etkavgispd grflkfdiei grgsfktvyk
      241 gldtdttvev awcelqdrkl skserqrfke eagmlkglqh pnivrfydsw estvkgkkci
      301 vlvtelmtsg tlktylkrfk vmkikvlrsw crqilkglqf lhtrtppiih rdlkcdnifi
      361 tgptgsvkig dlglatlkra sfaksvigtp efmapemyee kydesvdvya fgmcmlemat
      421 seypysecqn aaqiyrrvts gvkpasfdkv aipevkeiie gcirqnkger yaikdllnha
      481 ffqeetgvrv elaeeddgek iaiklwlrie dikklkgkyk dneaiefsfd lerdvpedva
      541 qemvesgyvc egdhktmaka ikdrvslikr kreqrqlvre eqeknlqeeg sqkqqleqqq
      601 psgashagsk hpqsvtgttp vpatsasvst qvepeepead qhqqlqfqqp sisilsdgtv
      661 dsgqgssvyt esgvssqqtv sygsqhdqsi stpavqgyaa svgpvqsqqh ggyqppaapq
      721 hprggtptfp dsqiffptvh erpvsfsppp vcppkvavaq rrkstsflea qtchfqpllk
      781 tgqslvppgg sptnwtpeaf vmlgtaaqrv tgeplhvqvn pvfepapvhs dyrsgptppe
      841 dahyrmhpea vylvgmhyps qtqvqgqsas nspsvpsqpt qhtqqnvqqp assqqpgqyq
      901 lqqpsvsaga tppqtvsqtq tsqvmpvpqa aagtqlpvsq pvpiiqgepq lpvaapslpq
      961 psvapavpig shflpmgqpm ptsmvpqfsv sqlpvaaphv svaqpgfqsl pismaaginq
     1021 plltlatsaa aatvpvgstv vpsqlptlmq pvaqlpsqvl pqllqpavqs mglpvsigqa
     1081 aeaslpagda lyqgfpsqlp pqypgesnva pssavasvsv psavlspplp adamaqpgyl
     1141 apvvqpyveq svlvpmgslg ghvpvpppav slaqpassas aqqavleqnv mplwgpcchw
     1201 lfcwegtqga sqtapsetlp atqpaqstal assmdsahsd vasglsdgne nvpassgrhe
     1261 grttkrhmrr svrsrsrhek tarpklriln vsnkgdrvve cqlethnrkm vtfkfdldgd
     1321 npeeiasimv qnefilater dsfveqvrei iekademlse dvsaepeggq glesmqmkdd
     1381 gffpgsqkle fkqpdptssm pqrigvppss ftqvvhsagr rfivspvpes rlkeqgffts
     1441 pvpggkedmv aasplhgpgm nlshsassls lqqafsemnh aqmtegpsta ppvfnqtvpp
     1501 fppalatmag sgappasvat ssmsvpsstg vslpgsvtlp segaavgvap sasvpssvsp
     1561 ppasesgqql tgvsssvsap asfslptasq paqpvtgdia psistpssla lpstqvpgvt
     1621 glgvvapavt sqsapqivss maapqtaval slaqnvalql pqlsssgsvs nlsettvvsa
     1681 qqslpesgqs vdtsqlcnta glslpisapl sssvatsicg svaqpvmhpl lvpsgitstp
     1741 vlpqipgatp mlpqvplpgv lpqpvtnlpa vqqtlihsqp qpaplpnqph ihcleadada
     1801 qskapgiddi ktleeklrsl fsehgnvgtv hpsvsletsl vmettvipgi pttavaptkp
     1861 ltsistcipp sslplgptgl pvltpvatpg qvitpvsyis asssvatavv kpgtspskpp
     1921 lsrvpvlpvg selpagtpss eplppfpgps ltqsqqpled ldaklrrtls petvpgtsap
     1981 acsvpsvast tvtglvstgt qslkdasasc gaesgatatt agagvlkmgr fqvsvavddv
     2041 lkegdkpetk plqfdttstd ssslsgsspe stlvkqagsr kseavadssl dvvdgmprtv
     2101 pvlqlpvdvv qptkvgrfqv ttttdqvgrf svsktqdeis caekepmtlp lsvdleqvas
     2161 saaapkkele srqsphmngp ssepeatfls gmakdlddgs gspdslqpmg skislpvqsl
     2221 snsfnssyms sdnesdiede dlkselrrlr ekhlkeiqel qsrqkqeies lymklgkapp
     2281 aviippaapl sgrrrrptkg ksskssrsss qgnkspqlsg nlsaqsapsv lppqqtlhpp
     2341 ggvpetgqnh llqplkpsps senlysafts dgalsvpsls apgqgtsstn tvgatvssqa
     2401 pqsqppaias srkgtftddl hklvdnward amnlsgkkvg kghssyegpg markfsapgq
     2461 lcvsmtsslg atpisassat slgpftkamc ppqqygypaa sfaapwsgtg gpaqpplgqf
     2521 qpvgaaslqs fninnlqksi snppgsnlrt t
//
LOCUS       XP_053907009            2453 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase WNK1 isoform X8 [Cuculus canorus].
ACCESSION   XP_053907009
VERSION     XP_053907009.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051034.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2453
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2453
                     /product="serine/threonine-protein kinase WNK1 isoform X8"
                     /calculated_mol_wt=257005
     Region          198..486
                     /region_name="STKc_WNK1"
                     /note="Catalytic domain of the Serine/Threonine protein
                     kinase, With No Lysine (WNK) 1; cd14030"
                     /db_xref="CDD:270932"
     Site            order(230..234,236,238,251,253,284,304..307,311,313,352,
                     354,356..357,359,371,374,388..391)
                     /site_type="active"
                     /db_xref="CDD:270932"
     Site            order(230..234,236,238,251,253,284,304..307,311,352,354,
                     356..357,359,371)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270932"
     Site            order(234,311,313,352,354,356,374,388..391)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270932"
     Site            370..391
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270932"
     Region          503..566
                     /region_name="OSR1_C"
                     /note="Oxidative-stress-responsive kinase 1 C-terminal
                     domain; pfam12202"
                     /db_xref="CDD:463491"
     Region          <697..1103
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <1344..1646
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <1562..1837
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..2453
                     /gene="WNK1"
                     /coded_by="XM_054051034.1:446..7807"
                     /db_xref="GeneID:104055922"
ORIGIN      
        1 msgggadgst taprflvppp pppkngsssd ssvgeklgaa ehgtsgaggt sggagnesrs
       61 eeyrrrrhtm dkdsrgaaat ehrffrrsvi cdsnatalel pslqpsapvs ggsaaplvsp
      121 pecasrtssi aaggaaqasl lqqppppapl plegqsaqel paakdaslll pkeeedeatv
      181 lpptsvagsa savsrefeer rtqqedieel etkavgispd grflkfdiei grgsfktvyk
      241 gldtdttvev awcelqdrkl skserqrfke eagmlkglqh pnivrfydsw estvkgkkci
      301 vlvtelmtsg tlktylkrfk vmkikvlrsw crqilkglqf lhtrtppiih rdlkcdnifi
      361 tgptgsvkig dlglatlkra sfaksvigtp efmapemyee kydesvdvya fgmcmlemat
      421 seypysecqn aaqiyrrvts gvkpasfdkv aipevkeiie gcirqnkger yaikdllnha
      481 ffqeetgvrv elaeeddgek iaiklwlrie dikklkgkyk dneaiefsfd lerdvpedva
      541 qemvesgyvc egdhktmaka ikdrvslikr kreqrqlvre eqeknlqeeg sqkqqleqqq
      601 psgashagsk hpqsvtgttp vpatsasvst qvepeepead qhqqlqfqqp sisilsdgtv
      661 dsgqgssvyt esgvssqqtv sygsqhdqsi stpavqgyaa svgpvqsqqh ggyqppaatq
      721 vqgqsasnsp svpsqptqht qqnvqqpass qqpgqyqlqq psvsagatpp qtvsqtqtsq
      781 vmpvpqaaag tqlpvsqpvp iiqgepqlpv aapslpqpsv apavpigshf lpmgqpmpts
      841 mvpqfsvsql pvaaphvsva qpgfqslpis maaginqpll tlatsaaaat vpvgstvvps
      901 qlptlmqpva qlpsqvlpql lqpavqsmgl pvsigqaaea slpagdalyq gfpsqlppqy
      961 pgesnvapss avasvsvpsa vlspplpada maqpgylapv vqpyveqsvl vpmgslgghv
     1021 pvpppavsla qpassasaqq avleqnvmpl wgpcchwlfc wegtqgasqt apsetlpatq
     1081 paqstalass mdsahsdvas glsdgnenvp assgrhegrt tkrhmrrsvr srsrhektar
     1141 pklrilnvsn kgdrvvecql ethnrkmvtf kfdldgdnpe eiasimvqne filaterdsf
     1201 veqvreiiek ademlsedvs aepeggqgle smqmkddgff pgsqklefkq pdptssmpqr
     1261 igvppssftq vvhsagrrfi vspvpesrlk eqgfftspvp ggkedmvaas plhgpgmnls
     1321 hsasslslqq afsemnhaqm tegpstappv fnqtvppfpp alatmagsga ppasvatssm
     1381 svpsstgvsl pgsvtlpseg aavgvapsas vpssvspppa sesgqqltgv sssvsapasf
     1441 slptasqpaq pvtgdiapsi stpsslalps tqvpgvtglg vvapavtsqs apqivssmaa
     1501 pqtavalsla qnvalqlpql sssgsvsnls ettvvsaqqs lpesgqsvdt sqlcntagls
     1561 lpisaplsss vatsicgsva qpvmhpllvp sgitstpvlp qipgatpmlp qvplpgvlpq
     1621 pvtnlpavqq tlihsqpqpa plpnqphihc leadadaqsk apgiddiktl eeklrslfse
     1681 hgnvgtvhps vsletslvme ttvipgiptt avaptkplts istcippssl plgptglpvl
     1741 tpvatpgqvi tpvsyisass svatavvkpg tspskpplsr vpvlpvgsel pagtpssepl
     1801 ppfpgpsltq sqqpledlda klrrtlspet vpgtsapacs vpsvasttvt glvstgtqsl
     1861 kdasascgae sgatattaga gvlkmgrfqv svavddvlke gdkpetkplq fdttstdsss
     1921 lsgsspestl vkqagsrkse avadssldvv dgmprtvpvl qlpvdvvqpt kvgrfqvttt
     1981 tdqvgrfsvs ktqdeiscae kepmtlplsv dleqvassaa apkkelesrq sphmngpsse
     2041 peatflsgma kdlddgsgsp dslqpmgski slpvqslsns fnssymssdn esdiededlk
     2101 selrrlrekh lkeiqelqsr qkqeieslym klgkappavi ippaaplsgr rrrptkgkss
     2161 kssrsssqgn kspqlsgnls aqsapsvlpp qqtlhppggv petgqnhllq plkpspssen
     2221 lysaftsdga lsvpslsapg qgcakfncas ervtfkpggr rtrflstpcl alwkmvkkvc
     2281 pcnqlcrtss tntvgatvss qapqsqppai assrkgtftd dlhklvdnwa rdamnlsgkk
     2341 vgkghssyeg pgmarkfsap gqlcvsmtss lgatpisass atslgpftka mcppqqygyp
     2401 aasfaapwsg tggpaqpplg qfqpvgaasl qsfninnlqk sisnppgsnl rtt
//
LOCUS       XP_053907016            2438 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase WNK1 isoform X9 [Cuculus canorus].
ACCESSION   XP_053907016
VERSION     XP_053907016.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051041.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2438
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2438
                     /product="serine/threonine-protein kinase WNK1 isoform X9"
                     /calculated_mol_wt=256783
     Region          198..486
                     /region_name="STKc_WNK1"
                     /note="Catalytic domain of the Serine/Threonine protein
                     kinase, With No Lysine (WNK) 1; cd14030"
                     /db_xref="CDD:270932"
     Site            order(230..234,236,238,251,253,284,304..307,311,313,352,
                     354,356..357,359,371,374,388..391)
                     /site_type="active"
                     /db_xref="CDD:270932"
     Site            order(230..234,236,238,251,253,284,304..307,311,352,354,
                     356..357,359,371)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270932"
     Site            order(234,311,313,352,354,356,374,388..391)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270932"
     Site            370..391
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270932"
     Region          503..566
                     /region_name="OSR1_C"
                     /note="Oxidative-stress-responsive kinase 1 C-terminal
                     domain; pfam12202"
                     /db_xref="CDD:463491"
     Region          <687..1102
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <1329..1631
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <1547..1822
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..2438
                     /gene="WNK1"
                     /coded_by="XM_054051041.1:446..7762"
                     /db_xref="GeneID:104055922"
ORIGIN      
        1 msgggadgst taprflvppp pppkngsssd ssvgeklgaa ehgtsgaggt sggagnesrs
       61 eeyrrrrhtm dkdsrgaaat ehrffrrsvi cdsnatalel pslqpsapvs ggsaaplvsp
      121 pecasrtssi aaggaaqasl lqqppppapl plegqsaqel paakdaslll pkeeedeatv
      181 lpptsvagsa savsrefeer rtqqedieel etkavgispd grflkfdiei grgsfktvyk
      241 gldtdttvev awcelqdrkl skserqrfke eagmlkglqh pnivrfydsw estvkgkkci
      301 vlvtelmtsg tlktylkrfk vmkikvlrsw crqilkglqf lhtrtppiih rdlkcdnifi
      361 tgptgsvkig dlglatlkra sfaksvigtp efmapemyee kydesvdvya fgmcmlemat
      421 seypysecqn aaqiyrrvts gvkpasfdkv aipevkeiie gcirqnkger yaikdllnha
      481 ffqeetgvrv elaeeddgek iaiklwlrie dikklkgkyk dneaiefsfd lerdvpedva
      541 qemvesgyvc egdhktmaka ikdrvslikr kreqrqlvre eqeknlqeeg sqkqqleqqq
      601 psgashagsk hpqsvtgttp vpatsasvst qvepeepead qhqqlqfqqp sisilsdgtv
      661 dsgqgssvyt esgvssqqtv sygsqhdqsi stpavqgyaa svgpvqsqqh ggyqppaapq
      721 hprggtptfp dsqiffptvh erpvsfsppp vcppkvavaq rrkstsflea qtchfqpllk
      781 tgqslvppgg sptnwtpeaf vmlgtaaqrv tgeplhvqvn pvfepapvhs dyrsgptppe
      841 dahyrmhpea vylvgmhyps qtqvqgqsas nspsvpsqpt qhtqqnvqqp assqqpgqyq
      901 lqqpsvsaga tppqtvsqtq tsqvmpvpqa aagtqgfpsq lppqypgesn vapssavasv
      961 svpsavlspp lpadamaqpg ylapvvqpyv eqsvlvpmgs lgghvpvppp avslaqpass
     1021 asaqqavleq nvmplwgpcc hwlfcwegtq gasqtapset lpatqpaqst alassmdsah
     1081 sdvasglsdg nenvpassgr hegrttkrhm rrsvrsrsrh ektarpklri lnvsnkgdrv
     1141 vecqlethnr kmvtfkfdld gdnpeeiasi mvqnefilat erdsfveqvr eiiekademl
     1201 sedvsaepeg gqglesmqmk ddgffpgsqk lefkqpdpts smpqrigvpp ssftqvvhsa
     1261 grrfivspvp esrlkeqgff tspvpggked mvaasplhgp gmnlshsass lslqqafsem
     1321 nhaqmtegps tappvfnqtv ppfppalatm agsgappasv atssmsvpss tgvslpgsvt
     1381 lpsegaavgv apsasvpssv spppasesgq qltgvsssvs apasfslpta sqpaqpvtgd
     1441 iapsistpss lalpstqvpg vtglgvvapa vtsqsapqiv ssmaapqtav alslaqnval
     1501 qlpqlsssgs vsnlsettvv saqqslpesg qsvdtsqlcn taglslpisa plsssvatsi
     1561 cgsvaqpvmh pllvpsgits tpvlpqipga tpmlpqvplp gvlpqpvtnl pavqqtlihs
     1621 qpqpaplpnq phihcleada daqskapgid diktleeklr slfsehgnvg tvhpsvslet
     1681 slvmettvip gipttavapt kpltsistci ppsslplgpt glpvltpvat pgqvitpvsy
     1741 isasssvata vvkpgtspsk pplsrvpvlp vgselpagtp sseplppfpg psltqsqqpl
     1801 edldaklrrt lspetvpgts apacsvpsva sttvtglvst gtqslkdasa scgaesgata
     1861 ttagagvlkm grfqvsvavd dvlkegdkpe tkplqfdtts tdssslsgss pestlvkqag
     1921 srkseavads sldvvdgmpr tvpvlqlpvd vvqptkvgrf qvttttdqvg rfsvsktqde
     1981 iscaekepmt lplsvdleqv assaaapkke lesrqsphmn gpssepeatf lsgmakdldd
     2041 gsgspdslqp mgskislpvq slsnsfnssy mssdnesdie dedlkselrr lrekhlkeiq
     2101 elqsrqkqei eslymklgka ppaviippaa plsgrrrrpt kgksskssrs ssqgnkspql
     2161 sgnlsaqsap svlppqqtlh ppggvpetgq nhllqplkps pssenlysaf tsdgalsvps
     2221 lsapgqgcak fncaservtf kpggrrtrfl stpclalwkm vkkvcpcnql crtsstntvg
     2281 atvssqapqs qppaiassrk gtftddlhkl vdnwardamn lsgkkvgkgh ssyegpgmar
     2341 kfsapgqlcv smtsslgatp isassatslg pftkamcppq qygypaasfa apwsgtggpa
     2401 qpplgqfqpv gaaslqsfni nnlqksisnp pgsnlrtt
//
LOCUS       XP_053907025            2326 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase WNK1 isoform X10 [Cuculus canorus].
ACCESSION   XP_053907025
VERSION     XP_053907025.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051050.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2326
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2326
                     /product="serine/threonine-protein kinase WNK1 isoform
                     X10"
                     /calculated_mol_wt=245275
     Region          198..486
                     /region_name="STKc_WNK1"
                     /note="Catalytic domain of the Serine/Threonine protein
                     kinase, With No Lysine (WNK) 1; cd14030"
                     /db_xref="CDD:270932"
     Site            order(230..234,236,238,251,253,284,304..307,311,313,352,
                     354,356..357,359,371,374,388..391)
                     /site_type="active"
                     /db_xref="CDD:270932"
     Site            order(230..234,236,238,251,253,284,304..307,311,352,354,
                     356..357,359,371)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270932"
     Site            order(234,311,313,352,354,356,374,388..391)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270932"
     Site            370..391
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270932"
     Region          503..566
                     /region_name="OSR1_C"
                     /note="Oxidative-stress-responsive kinase 1 C-terminal
                     domain; pfam12202"
                     /db_xref="CDD:463491"
     Region          <1217..1519
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <1435..1711
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..2326
                     /gene="WNK1"
                     /coded_by="XM_054051050.1:446..7426"
                     /db_xref="GeneID:104055922"
ORIGIN      
        1 msgggadgst taprflvppp pppkngsssd ssvgeklgaa ehgtsgaggt sggagnesrs
       61 eeyrrrrhtm dkdsrgaaat ehrffrrsvi cdsnatalel pslqpsapvs ggsaaplvsp
      121 pecasrtssi aaggaaqasl lqqppppapl plegqsaqel paakdaslll pkeeedeatv
      181 lpptsvagsa savsrefeer rtqqedieel etkavgispd grflkfdiei grgsfktvyk
      241 gldtdttvev awcelqdrkl skserqrfke eagmlkglqh pnivrfydsw estvkgkkci
      301 vlvtelmtsg tlktylkrfk vmkikvlrsw crqilkglqf lhtrtppiih rdlkcdnifi
      361 tgptgsvkig dlglatlkra sfaksvigtp efmapemyee kydesvdvya fgmcmlemat
      421 seypysecqn aaqiyrrvts gvkpasfdkv aipevkeiie gcirqnkger yaikdllnha
      481 ffqeetgvrv elaeeddgek iaiklwlrie dikklkgkyk dneaiefsfd lerdvpedva
      541 qemvesgyvc egdhktmaka ikdrvslikr kreqrqlvre eqeknlqeeg sqkqqleqqq
      601 psgashagsk hpqsvtgttp vpatsasvst qvepeepead qhqqlqfqqp sisilsdgtv
      661 dsgqgssvyt esgvssqqtv sygsqhdqsi stpavqgyaa svgpvqsqqh ggyqppaapq
      721 hprggtptfp dsqiffptvh erpvsfsppp vcppkvavaq rrkstsflea qtchfqpllk
      781 tgqslvppgg sptnwtpeaf vmlgtaaqrv tgeplhvqvn pvfepapvhs dyrsgptppe
      841 dahyrmhpea vylvgmhyps qtqvqgqsas nspsvpsqpt qhtqqnvqqp assqqpgqyq
      901 lqqpsvsaga tppqtvsqtq tsqvmpvpqa aagtqgtqga sqtapsetlp atqpaqstal
      961 assmdsahsd vasglsdgne nvpassgrhe grttkrhmrr svrsrsrhek tarpklriln
     1021 vsnkgdrvve cqlethnrkm vtfkfdldgd npeeiasimv qnefilater dsfveqvrei
     1081 iekademlse dvsaepeggq glesmqmkdd gffpgsqkle fkqpdptssm pqrigvppss
     1141 ftqvvhsagr rfivspvpes rlkeqgffts pvpggkedmv aasplhgpgm nlshsassls
     1201 lqqafsemnh aqmtegpsta ppvfnqtvpp fppalatmag sgappasvat ssmsvpsstg
     1261 vslpgsvtlp segaavgvap sasvpssvsp ppasesgqql tgvsssvsap asfslptasq
     1321 paqpvtgdia psistpssla lpstqvpgvt glgvvapavt sqsapqivss maapqtaval
     1381 slaqnvalql pqlsssgsvs nlsettvvsa qqslpesgqs vdtsqlcnta glslpisapl
     1441 sssvatsicg svaqpvmhpl lvpsgitstp vlpqipgatp mlpqvplpgv lpqpvtnlpa
     1501 vqqtlihsqp qpaplpnqph ihcleadada qskapgiddi ktleeklrsl fsehgnvgtv
     1561 hpsvsletsl vmettvipgi pttavaptkp ltsistcipp sslplgptgl pvltpvatpg
     1621 qvitpvsyis asssvatavv kpgtspskpp lsrvpvlpvg selpagtpss eplppfpgps
     1681 ltqsqqpled ldaklrrtls petvpgtsap acsvpsvast tvtglvstgt qslkdasasc
     1741 gaesgatatt agagvlkmgr fqvsvavddv lkegdkpetk plqfdttstd ssslsgsspe
     1801 stlvkqagsr kseavadssl dvvdgmprtv pvlqlpvdvv qptkvgrfqv ttttdqvgrf
     1861 svsktqdeis caekepmtlp lsvdleqvas saaapkkele srqsphmngp ssepeatfls
     1921 gmakdlddgs gspdslqpmg skislpvqsl snsfnssyms sdnesdiede dlkselrrlr
     1981 ekhlkeiqel qsrqkqeies lymklgkapp aviippaapl sgrrrrptkg ksskssrsss
     2041 qgnkspqlsg nlsaqsapsv lppqqtlhpp ggvpetgqnh llqplkpsps senlysafts
     2101 dgalsvpsls apgqgcakfn caservtfkp ggrrtrflst pclalwkmvk kvcpcnqlcr
     2161 tsstntvgat vssqapqsqp paiassrkgt ftddlhklvd nwardamnls gkkvgkghss
     2221 yegpgmarkf sapgqlcvsm tsslgatpis assatslgpf tkamcppqqy gypaasfaap
     2281 wsgtggpaqp plgqfqpvga aslqsfninn lqksisnppg snlrtt
//
LOCUS       XP_053907035            2186 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase WNK1 isoform X11 [Cuculus canorus].
ACCESSION   XP_053907035
VERSION     XP_053907035.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051060.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2186
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2186
                     /product="serine/threonine-protein kinase WNK1 isoform
                     X11"
                     /calculated_mol_wt=228476
     Region          <31..76
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Region          93..156
                     /region_name="OSR1_C"
                     /note="Oxidative-stress-responsive kinase 1 C-terminal
                     domain; pfam12202"
                     /db_xref="CDD:463491"
     Region          <283..836
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <1077..1379
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <1295..1570
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..2186
                     /gene="WNK1"
                     /coded_by="XM_054051060.1:291..6851"
                     /db_xref="GeneID:104055922"
ORIGIN      
        1 mdfakreicp ifvivnsrcc ccshkdcske gvkpasfdkv aipevkeiie gcirqnkger
       61 yaikdllnha ffqeetgvrv elaeeddgek iaiklwlrie dikklkgkyk dneaiefsfd
      121 lerdvpedva qemvesgyvc egdhktmaka ikdrvslikr kreqrqlvre eqeknlqeeg
      181 sqkqqleqqq psgashagsk hpqsvtgttp vpatsasvst qvepeepead qhqqlqfqqp
      241 sisilsdgtv dsgqgssvyt esgvssqqtv sygsqhdqsi stpavqgyaa svgpvqsqqh
      301 ggyqppaapq hprggtptfp dsqiffptvh erpvsfsppp vcppkvavaq rrkstsflea
      361 qtchfqpllk tgqslvppgg sptnwtpeaf vmlgtaaqrv tgeplhvqvn pvfepapvhs
      421 dyrsgptppe dahyrmhpea vylvgmhyps qtqvqgqsas nspsvpsqpt qhtqqnvqqp
      481 assqqpgqyq lqqpsvsaga tppqtvsqtq tsqvmpvpqa aagtqlpvsq pvpiiqgepq
      541 lpvaapslpq psvapavpig shflpmgqpm ptsmvpqfsv sqlpvaaphv svaqpgfqsl
      601 pismaaginq plltlatsaa aatvpvgstv vpsqlptlmq pvaqlpsqvl pqllqpavqs
      661 mglpvsigqa aeaslpagda lyqgfpsqlp pqypgesnva pssavasvsv psavlspplp
      721 adamaqpgyl apvvqpyveq svlvpmgslg ghvpvpppav slaqpassas aqqavleqnv
      781 mplwgpcchw lfcwegtqga sqtapsetlp atqpaqstal assmdsahsd vasglsdgne
      841 nvpassgrhe grttkrhmrr svrsrsrhek tarpklriln vsnkgdrvve cqlethnrkm
      901 vtfkfdldgd npeeiasimv qnefilater dsfveqvrei iekademlse dvsaepeggq
      961 glesmqmkdd gffpgsqkle fkqpdptssm pqrigvppss ftqvvhsagr rfivspvpes
     1021 rlkeqgffts pvpggkedmv aasplhgpgm nlshsassls lqqafsemnh aqmtegpsta
     1081 ppvfnqtvpp fppalatmag sgappasvat ssmsvpsstg vslpgsvtlp segaavgvap
     1141 sasvpssvsp ppasesgqql tgvsssvsap asfslptasq paqpvtgdia psistpssla
     1201 lpstqvpgvt glgvvapavt sqsapqivss maapqtaval slaqnvalql pqlsssgsvs
     1261 nlsettvvsa qqslpesgqs vdtsqlcnta glslpisapl sssvatsicg svaqpvmhpl
     1321 lvpsgitstp vlpqipgatp mlpqvplpgv lpqpvtnlpa vqqtlihsqp qpaplpnqph
     1381 ihcleadada qskapgiddi ktleeklrsl fsehgnvgtv hpsvsletsl vmettvipgi
     1441 pttavaptkp ltsistcipp sslplgptgl pvltpvatpg qvitpvsyis asssvatavv
     1501 kpgtspskpp lsrvpvlpvg selpagtpss eplppfpgps ltqsqqpled ldaklrrtls
     1561 petvpgtsap acsvpsvast tvtglvstgt qslkdasasc gaesgatatt agagvlkmgr
     1621 fqvsvavddv lkegdkpetk plqfdttstd ssslsgsspe stlvkqagsr kseavadssl
     1681 dvvdgmprtv pvlqlpvdvv qptkvgrfqv ttttdqvgrf svsktqdeis caekepmtlp
     1741 lsvdleqvas saaapkkele srqsphmngp ssepeatfls gmakdlddgs gspdslqpmg
     1801 skislpvqsl snsfnssyms sdnesdiede dlkselrrlr ekhlkeiqel qsrqkqeies
     1861 lymklgkapp aviippaapl sgrrrrptkg ksskssrsss qgnkspqlsg nlsaqsapsv
     1921 lppqqtlhpp ggvpetgqnh llqplkpsps senlysafts dgalsvpsls apgqgcakfn
     1981 caservtfkp ggrrtrflst pclalwkmvk kvcpcnqlcr tsstntvgat vssqapqsqp
     2041 paiassrkgt ftddlhklvd nwardamnls gkkvgkghss yegpgmarkf sapgqlcvsm
     2101 tsslgatpis assatslgpf tkamcppqqy gypaasfaap wsgtggpaqp plgqfqpvga
     2161 aslqsfninn lqksisnppg snlrtt
//
LOCUS       XP_053907059             215 aa            linear   VRT 09-MAR-2023
DEFINITION  dnaJ homolog subfamily B member 9 [Cuculus canorus].
ACCESSION   XP_053907059
VERSION     XP_053907059.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051084.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..215
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..215
                     /product="dnaJ homolog subfamily B member 9"
                     /calculated_mol_wt=24999
     Region          26..>154
                     /region_name="DnaJ_bact"
                     /note="chaperone protein DnaJ; TIGR02349"
                     /db_xref="CDD:274090"
     CDS             1..215
                     /gene="DNAJB9"
                     /coded_by="XM_054051084.1:136..783"
                     /db_xref="GeneID:104062392"
ORIGIN      
        1 mattqsvftf alcilmitel ilatesyydi lgvprsasdr qikkafhkla mkyhpdknks
       61 pgaeakfrei aeayetlsde nkrreydqfg rrggqgnnes pfhqsfnfnf ddlfkdfdlf
      121 sqnsrskkhf dnhfrshrea hsrqrrsfqe fsfggglfde vlenmekmfs fsdfenahrh
      181 avrtdtrfhg sskhcrtvtq rrgnmvttyt dcsgq
//
LOCUS       XP_053907072             809 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SPT20 homolog isoform X1 [Cuculus canorus].
ACCESSION   XP_053907072
VERSION     XP_053907072.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051097.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..809
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..809
                     /product="transcription factor SPT20 homolog isoform X1"
                     /calculated_mol_wt=88006
     Region          77..214
                     /region_name="Spt20"
                     /note="Spt20 family; pfam12090"
                     /db_xref="CDD:463459"
     CDS             1..809
                     /gene="SUPT20H"
                     /coded_by="XM_054051097.1:299..2728"
                     /db_xref="GeneID:104066125"
ORIGIN      
        1 mqqalelald raeyiiesar qrppkrkyls sgrksvfqkl ydlyieecek epeikqklrr
       61 nvnlleklvm qetlsclvvn lypgnegysl mlrgkngsds etirlpyeeg elleyldaee
      121 lppilvdlle ksqvnifhcg cviaeirdyr qsgnmkspmy qskhillrpt mqtlicdvhs
      181 itsdnhkwtq edklllesql ilataeplcl dpsiavtctt nrllynkqkm ntrpmkrcfk
      241 rysrsslnrq qevahystpp qlrlldylqk rkerkgaqqy dlkiskagnc vdmwkqnpcy
      301 ltapsevdve kyakveksik pddsqptvwp aheikddyvf ecevgnqlqk tkltifqslg
      361 nplyygkiqt lkgdeendnl ltpsqfligs ktdaervvnq yqelvqneak cpvkmfhnsg
      421 gsinlshlsp gkemeqpesl sgsvqssvlg kgvkhrpppi klpsssgsss sgnifspqqs
      481 sghlksptpp pppskpagls rkqsmdlnqv smlspaamsp asssqrsgtp kpstptptnt
      541 psstphppda qsstpitpsa tptpqdsgft pqptlltpfa qqqvslsqal pvmtiplstm
      601 vtsittgtts tqvmanpagl nfinvvgsvc gtqtlmsgsn pmlgcntgai apaginlsgv
      661 lpsgglvpsa lpaamqsasq agspfglkna snlrplnllq lpggshifnp lqqqqqqqsq
      721 fspqqqsqqr ttcslqqqge qgsdqgpsnq dqalsaqqaa vinltgvgnf mqpqatavai
      781 laasngygss sstssssass tafrqslkk
//
LOCUS       XP_053907082             809 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SPT20 homolog isoform X1 [Cuculus canorus].
ACCESSION   XP_053907082
VERSION     XP_053907082.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051107.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..809
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..809
                     /product="transcription factor SPT20 homolog isoform X1"
                     /calculated_mol_wt=88006
     Region          77..214
                     /region_name="Spt20"
                     /note="Spt20 family; pfam12090"
                     /db_xref="CDD:463459"
     CDS             1..809
                     /gene="SUPT20H"
                     /coded_by="XM_054051107.1:296..2725"
                     /db_xref="GeneID:104066125"
ORIGIN      
        1 mqqalelald raeyiiesar qrppkrkyls sgrksvfqkl ydlyieecek epeikqklrr
       61 nvnlleklvm qetlsclvvn lypgnegysl mlrgkngsds etirlpyeeg elleyldaee
      121 lppilvdlle ksqvnifhcg cviaeirdyr qsgnmkspmy qskhillrpt mqtlicdvhs
      181 itsdnhkwtq edklllesql ilataeplcl dpsiavtctt nrllynkqkm ntrpmkrcfk
      241 rysrsslnrq qevahystpp qlrlldylqk rkerkgaqqy dlkiskagnc vdmwkqnpcy
      301 ltapsevdve kyakveksik pddsqptvwp aheikddyvf ecevgnqlqk tkltifqslg
      361 nplyygkiqt lkgdeendnl ltpsqfligs ktdaervvnq yqelvqneak cpvkmfhnsg
      421 gsinlshlsp gkemeqpesl sgsvqssvlg kgvkhrpppi klpsssgsss sgnifspqqs
      481 sghlksptpp pppskpagls rkqsmdlnqv smlspaamsp asssqrsgtp kpstptptnt
      541 psstphppda qsstpitpsa tptpqdsgft pqptlltpfa qqqvslsqal pvmtiplstm
      601 vtsittgtts tqvmanpagl nfinvvgsvc gtqtlmsgsn pmlgcntgai apaginlsgv
      661 lpsgglvpsa lpaamqsasq agspfglkna snlrplnllq lpggshifnp lqqqqqqqsq
      721 fspqqqsqqr ttcslqqqge qgsdqgpsnq dqalsaqqaa vinltgvgnf mqpqatavai
      781 laasngygss sstssssass tafrqslkk
//
LOCUS       XP_053907093             808 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SPT20 homolog isoform X2 [Cuculus canorus].
ACCESSION   XP_053907093
VERSION     XP_053907093.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051118.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..808
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..808
                     /product="transcription factor SPT20 homolog isoform X2"
                     /calculated_mol_wt=87878
     Region          76..213
                     /region_name="Spt20"
                     /note="Spt20 family; pfam12090"
                     /db_xref="CDD:463459"
     CDS             1..808
                     /gene="SUPT20H"
                     /coded_by="XM_054051118.1:299..2725"
                     /db_xref="GeneID:104066125"
ORIGIN      
        1 mqqalelald raeyiiesar qrppkrkyls sgrksvfqkl ydlyieecek epeikklrrn
       61 vnlleklvmq etlsclvvnl ypgnegyslm lrgkngsdse tirlpyeege lleyldaeel
      121 ppilvdllek sqvnifhcgc viaeirdyrq sgnmkspmyq skhillrptm qtlicdvhsi
      181 tsdnhkwtqe dklllesqli lataeplcld psiavtcttn rllynkqkmn trpmkrcfkr
      241 ysrsslnrqq evahystppq lrlldylqkr kerkgaqqyd lkiskagncv dmwkqnpcyl
      301 tapsevdvek yakveksikp ddsqptvwpa heikddyvfe cevgnqlqkt kltifqslgn
      361 plyygkiqtl kgdeendnll tpsqfligsk tdaervvnqy qelvqneakc pvkmfhnsgg
      421 sinlshlspg kemeqpesls gsvqssvlgk gvkhrpppik lpsssgssss gnifspqqss
      481 ghlksptppp ppskpaglsr kqsmdlnqvs mlspaamspa sssqrsgtpk pstptptntp
      541 sstphppdaq sstpitpsat ptpqdsgftp qptlltpfaq qqvslsqalp vmtiplstmv
      601 tsittgttst qvmanpagln finvvgsvcg tqtlmsgsnp mlgcntgaia paginlsgvl
      661 psgglvpsal paamqsasqa gspfglknas nlrplnllql pggshifnpl qqqqqqqsqf
      721 spqqqsqqrt tcslqqqgeq gsdqgpsnqd qalsaqqaav inltgvgnfm qpqatavail
      781 aasngygsss stssssasst afrqslkk
//
LOCUS       XP_053907099             808 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SPT20 homolog isoform X3 [Cuculus canorus].
ACCESSION   XP_053907099
VERSION     XP_053907099.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051124.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..808
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..808
                     /product="transcription factor SPT20 homolog isoform X3"
                     /calculated_mol_wt=87878
     Region          77..214
                     /region_name="Spt20"
                     /note="Spt20 family; pfam12090"
                     /db_xref="CDD:463459"
     CDS             1..808
                     /gene="SUPT20H"
                     /coded_by="XM_054051124.1:299..2725"
                     /db_xref="GeneID:104066125"
ORIGIN      
        1 mqqalelald raeyiiesar qrppkrkyls sgrksvfqkl ydlyieecek epeikqklrr
       61 nvnlleklvm qetlsclvvn lypgnegysl mlrgkngsds etirlpyeeg elleyldaee
      121 lppilvdlle ksqvnifhcg cviaeirdyr qsgnmkspmy qskhillrpt mqtlicdvhs
      181 itsdnhkwtq edklllesql ilataeplcl dpsiavtctt nrllynkqkm ntrpmkrcfk
      241 rysrsslnrq qevahystpp qlrlldylqk rkerkgaqqy dlkiskagnc vdmwkqnpcy
      301 ltapsevdve kyakveksik pddsqptvwp aheikddyvf ecevgnqlqk tkltifqslg
      361 nplyygkiqt lkgdeendnl ltpsqfligs ktdaervvnq yqelvqneak cpvkmfhnsg
      421 gsinlshlsp gkemepesls gsvqssvlgk gvkhrpppik lpsssgssss gnifspqqss
      481 ghlksptppp ppskpaglsr kqsmdlnqvs mlspaamspa sssqrsgtpk pstptptntp
      541 sstphppdaq sstpitpsat ptpqdsgftp qptlltpfaq qqvslsqalp vmtiplstmv
      601 tsittgttst qvmanpagln finvvgsvcg tqtlmsgsnp mlgcntgaia paginlsgvl
      661 psgglvpsal paamqsasqa gspfglknas nlrplnllql pggshifnpl qqqqqqqsqf
      721 spqqqsqqrt tcslqqqgeq gsdqgpsnqd qalsaqqaav inltgvgnfm qpqatavail
      781 aasngygsss stssssasst afrqslkk
//
LOCUS       XP_053907105             807 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SPT20 homolog isoform X4 [Cuculus canorus].
ACCESSION   XP_053907105
VERSION     XP_053907105.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051130.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..807
                     /product="transcription factor SPT20 homolog isoform X4"
                     /calculated_mol_wt=87750
     Region          76..213
                     /region_name="Spt20"
                     /note="Spt20 family; pfam12090"
                     /db_xref="CDD:463459"
     CDS             1..807
                     /gene="SUPT20H"
                     /coded_by="XM_054051130.1:299..2722"
                     /db_xref="GeneID:104066125"
ORIGIN      
        1 mqqalelald raeyiiesar qrppkrkyls sgrksvfqkl ydlyieecek epeikklrrn
       61 vnlleklvmq etlsclvvnl ypgnegyslm lrgkngsdse tirlpyeege lleyldaeel
      121 ppilvdllek sqvnifhcgc viaeirdyrq sgnmkspmyq skhillrptm qtlicdvhsi
      181 tsdnhkwtqe dklllesqli lataeplcld psiavtcttn rllynkqkmn trpmkrcfkr
      241 ysrsslnrqq evahystppq lrlldylqkr kerkgaqqyd lkiskagncv dmwkqnpcyl
      301 tapsevdvek yakveksikp ddsqptvwpa heikddyvfe cevgnqlqkt kltifqslgn
      361 plyygkiqtl kgdeendnll tpsqfligsk tdaervvnqy qelvqneakc pvkmfhnsgg
      421 sinlshlspg kemepeslsg svqssvlgkg vkhrpppikl psssgssssg nifspqqssg
      481 hlksptpppp pskpaglsrk qsmdlnqvsm lspaamspas ssqrsgtpkp stptptntps
      541 stphppdaqs stpitpsatp tpqdsgftpq ptlltpfaqq qvslsqalpv mtiplstmvt
      601 sittgttstq vmanpaglnf invvgsvcgt qtlmsgsnpm lgcntgaiap aginlsgvlp
      661 sgglvpsalp aamqsasqag spfglknasn lrplnllqlp ggshifnplq qqqqqqsqfs
      721 pqqqsqqrtt cslqqqgeqg sdqgpsnqdq alsaqqaavi nltgvgnfmq pqatavaila
      781 asngygssss tssssassta frqslkk
//
LOCUS       XP_053907113             768 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SPT20 homolog isoform X5 [Cuculus canorus].
ACCESSION   XP_053907113
VERSION     XP_053907113.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051138.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..768
                     /product="transcription factor SPT20 homolog isoform X5"
                     /calculated_mol_wt=83341
     Region          77..214
                     /region_name="Spt20"
                     /note="Spt20 family; pfam12090"
                     /db_xref="CDD:463459"
     CDS             1..768
                     /gene="SUPT20H"
                     /coded_by="XM_054051138.1:299..2605"
                     /db_xref="GeneID:104066125"
ORIGIN      
        1 mqqalelald raeyiiesar qrppkrkyls sgrksvfqkl ydlyieecek epeikqklrr
       61 nvnlleklvm qetlsclvvn lypgnegysl mlrgkngsds etirlpyeeg elleyldaee
      121 lppilvdlle ksqvnifhcg cviaeirdyr qsgnmkspmy qskhillrpt mqtlicdvhs
      181 itsdnhkwtq edklllesql ilataeplcl dpsiavtctt nrllynkqkm ntrpmkrcfk
      241 rysrsslnrq qevahystpp qlrlldylqk rkerkgaqqy dlkiskagnc vdmwkqnpcy
      301 ltapsevdve kyakveksik pddsqptvwp aheikddyvf ecevgnqlqk tkltifqslg
      361 nplyygkiqt lkgdeendnl ltpsqfligs ktdaervvnq yqelvqneak cpvkmfhnsg
      421 gsinlshlsp gkemeqpesl sgsvqssvlg kgvkhrpppi klpsssgsss sgnifspqqs
      481 sghlksptpp pppskpagls rkqsmdlnqv smlspaamsp asssqrsgtp kpstptptnt
      541 psstphppda qsstpitpsa tptpqdsgft pqptlltpfa qqqvslsqal pvmtiplstm
      601 vtsittgtts tqvmanpagl nfinvvgsvc gtqtlmsgsn pmlgcntgai apaginlsgv
      661 lpsgglvpsa lpaamqsasq agspfglkna snlrplnllq gsdqgpsnqd qalsaqqaav
      721 inltgvgnfm qpqatavail aasngygsss stssssasst afrqslkk
//
LOCUS       XP_053907120             728 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SPT20 homolog isoform X6 [Cuculus canorus].
ACCESSION   XP_053907120
VERSION     XP_053907120.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051145.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..728
                     /product="transcription factor SPT20 homolog isoform X6"
                     /calculated_mol_wt=79769
     Region          77..214
                     /region_name="Spt20"
                     /note="Spt20 family; pfam12090"
                     /db_xref="CDD:463459"
     CDS             1..728
                     /gene="SUPT20H"
                     /coded_by="XM_054051145.1:299..2485"
                     /db_xref="GeneID:104066125"
ORIGIN      
        1 mqqalelald raeyiiesar qrppkrkyls sgrksvfqkl ydlyieecek epeikqklrr
       61 nvnlleklvm qetlsclvvn lypgnegysl mlrgkngsds etirlpyeeg elleyldaee
      121 lppilvdlle ksqvnifhcg cviaeirdyr qsgnmkspmy qskhillrpt mqtlicdvhs
      181 itsdnhkwtq edklllesql ilataeplcl dpsiavtctt nrllynkqkm ntrpmkrcfk
      241 rysrsslnrq qevahystpp qlrlldylqk rkerkgaqqy dlkiskagnc vdmwkqnpcy
      301 ltapsevdve kyakveksik pddsqptvwp aheikddyvf ecevgnqlqk tkltifqslg
      361 nplyygkiqt lkgdeendnl ltpsqfligs ktdaervvnq yqelvqneak cpvkmfhnsg
      421 gsinlshlsp gkemeqpesl sgsvqssvlg kgvkhrpppi klpsssgsss sgnifspqqs
      481 sghlksptpp pppskpagls rkqsmdlnqv smlspaamsp asssqrttst qvmanpagln
      541 finvvgsvcg tqtlmsgsnp mlgcntgaia paginlsgvl psgglvpsal paamqsasqa
      601 gspfglknas nlrplnllql pggshifnpl qqqqqqqsqf spqqqsqqrt tcslqqqgeq
      661 gsdqgpsnqd qalsaqqaav inltgvgnfm qpqatavail aasngygsss stssssasst
      721 afrqslkk
//
LOCUS       XP_053907127             685 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SPT20 homolog isoform X7 [Cuculus canorus].
ACCESSION   XP_053907127
VERSION     XP_053907127.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051152.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..685
                     /product="transcription factor SPT20 homolog isoform X7"
                     /calculated_mol_wt=74848
     Region          76..213
                     /region_name="Spt20"
                     /note="Spt20 family; pfam12090"
                     /db_xref="CDD:463459"
     CDS             1..685
                     /gene="SUPT20H"
                     /coded_by="XM_054051152.1:299..2356"
                     /db_xref="GeneID:104066125"
ORIGIN      
        1 mqqalelald raeyiiesar qrppkrkyls sgrksvfqkl ydlyieecek epeikklrrn
       61 vnlleklvmq etlsclvvnl ypgnegyslm lrgkngsdse tirlpyeege lleyldaeel
      121 ppilvdllek sqvnifhcgc viaeirdyrq sgnmkspmyq skhillrptm qtlicdvhsi
      181 tsdnhkwtqe dklllesqli lataeplcld psiavtcttn rllynkqkmn trpmkrcfkr
      241 ysrsslnrqq evahystppq lrlldylqkr kerkgaqqyd lkiskagncv dmwkqnpcyl
      301 tapsevdvek yakveksikp ddsqptvwpa heikddyvfe cevgnqlqkt kltifqslgn
      361 plyygkiqtl kgdeendnll tpsqfligsk tdaervvnqy qelvqneakc pvkmfhnsgg
      421 sinlshlspg kemepeslsg svqssvlgkg vkhrpppikl psssgssssg nifspqqssg
      481 hlksptpppp pskpaglsrk qsmdlnqvsm lspaamspas ssqrttstqv manpaglnfi
      541 nvvgsvcgtq tlmsgsnpml gcntgaiapa ginlsgvlps gglvpsalpa amqsasqags
      601 pfglknasnl rplnllqgsd qgpsnqdqal saqqaavinl tgvgnfmqpq atavailaas
      661 ngygssssts sssasstafr qslkk
//
LOCUS       XP_053907137             653 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SPT20 homolog isoform X8 [Cuculus canorus].
ACCESSION   XP_053907137
VERSION     XP_053907137.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051162.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..653
                     /product="transcription factor SPT20 homolog isoform X8"
                     /calculated_mol_wt=72587
     Region          77..214
                     /region_name="Spt20"
                     /note="Spt20 family; pfam12090"
                     /db_xref="CDD:463459"
     CDS             1..653
                     /gene="SUPT20H"
                     /coded_by="XM_054051162.1:299..2260"
                     /db_xref="GeneID:104066125"
ORIGIN      
        1 mqqalelald raeyiiesar qrppkrkyls sgrksvfqkl ydlyieecek epeikqklrr
       61 nvnlleklvm qetlsclvvn lypgnegysl mlrgkngsds etirlpyeeg elleyldaee
      121 lppilvdlle ksqvnifhcg cviaeirdyr qsgnmkspmy qskhillrpt mqtlicdvhs
      181 itsdnhkwtq edklllesql ilataeplcl dpsiavtctt nrllynkqkm ntrpmkrcfk
      241 rysrsslnrq qevahystpp qlrlldylqk rkerkgaqqy dlkiskagnc vdmwkqnpcy
      301 ltapsevdve kyakveksik pddsqptvwp aheikddyvf ecevgnqlqk tkltifqslg
      361 nplyygkiqt lkgdeendnl ltpsqfligs ktdaervvnq yqelvqneak cpvkmfhnsg
      421 gsinlshlsp gkemeqpesl sgsvqssvlg kgvkhrpppi klpsssgsss sgnifspqqs
      481 sghlksptpp pppskpagls rkqsmdlnqv smlspaamsp asssqsspfg lknasnlrpl
      541 nllqlpggsh ifnplqqqqq qqsqfspqqq sqqrttcslq qqgeqgsdqg psnqdqalsa
      601 qqaavinltg vgnfmqpqat availaasng ygsssstsss sasstafrqs lkk
//
LOCUS       XP_053907147             612 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SPT20 homolog isoform X9 [Cuculus canorus].
ACCESSION   XP_053907147
VERSION     XP_053907147.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051172.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..612
                     /product="transcription factor SPT20 homolog isoform X9"
                     /calculated_mol_wt=67922
     Region          77..214
                     /region_name="Spt20"
                     /note="Spt20 family; pfam12090"
                     /db_xref="CDD:463459"
     CDS             1..612
                     /gene="SUPT20H"
                     /coded_by="XM_054051172.1:299..2137"
                     /db_xref="GeneID:104066125"
ORIGIN      
        1 mqqalelald raeyiiesar qrppkrkyls sgrksvfqkl ydlyieecek epeikqklrr
       61 nvnlleklvm qetlsclvvn lypgnegysl mlrgkngsds etirlpyeeg elleyldaee
      121 lppilvdlle ksqvnifhcg cviaeirdyr qsgnmkspmy qskhillrpt mqtlicdvhs
      181 itsdnhkwtq edklllesql ilataeplcl dpsiavtctt nrllynkqkm ntrpmkrcfk
      241 rysrsslnrq qevahystpp qlrlldylqk rkerkgaqqy dlkiskagnc vdmwkqnpcy
      301 ltapsevdve kyakveksik pddsqptvwp aheikddyvf ecevgnqlqk tkltifqslg
      361 nplyygkiqt lkgdeendnl ltpsqfligs ktdaervvnq yqelvqneak cpvkmfhnsg
      421 gsinlshlsp gkemeqpesl sgsvqssvlg kgvkhrpppi klpsssgsss sgnifspqqs
      481 sghlksptpp pppskpagls rkqsmdlnqv smlspaamsp asssqsspfg lknasnlrpl
      541 nllqgsdqgp snqdqalsaq qaavinltgv gnfmqpqata vailaasngy gsssstssss
      601 asstafrqsl kk
//
LOCUS       XP_053907155             727 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SPT20 homolog isoform X10 [Cuculus canorus].
ACCESSION   XP_053907155
VERSION     XP_053907155.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051180.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..727
                     /product="transcription factor SPT20 homolog isoform X10"
                     /calculated_mol_wt=79641
     Region          76..213
                     /region_name="Spt20"
                     /note="Spt20 family; pfam12090"
                     /db_xref="CDD:463459"
     CDS             1..727
                     /gene="SUPT20H"
                     /coded_by="XM_054051180.1:299..2482"
                     /db_xref="GeneID:104066125"
ORIGIN      
        1 mqqalelald raeyiiesar qrppkrkyls sgrksvfqkl ydlyieecek epeikklrrn
       61 vnlleklvmq etlsclvvnl ypgnegyslm lrgkngsdse tirlpyeege lleyldaeel
      121 ppilvdllek sqvnifhcgc viaeirdyrq sgnmkspmyq skhillrptm qtlicdvhsi
      181 tsdnhkwtqe dklllesqli lataeplcld psiavtcttn rllynkqkmn trpmkrcfkr
      241 ysrsslnrqq evahystppq lrlldylqkr kerkgaqqyd lkiskagncv dmwkqnpcyl
      301 tapsevdvek yakveksikp ddsqptvwpa heikddyvfe cevgnqlqkt kltifqslgn
      361 plyygkiqtl kgdeendnll tpsqfligsk tdaervvnqy qelvqneakc pvkmfhnsgg
      421 sinlshlspg kemeqpesls gsvqssvlgk gvkhrpppik lpsssgssss gnifspqqss
      481 ghlksptppp ppskpaglsr kqsmdlnqvs mlspaamspa sssqrttstq vmanpaglnf
      541 invvgsvcgt qtlmsgsnpm lgcntgaiap aginlsgvlp sgglvpsalp aamqsasqag
      601 spfglknasn lrplnllqlp ggshifnplq qqqqqqsqfs pqqqsqqrtt cslqqqgeqg
      661 sdqgpsnqdq alsaqqaavi nltgvgnfmq pqatavaila asngygssss tssssassta
      721 frqslkk
//
LOCUS       XP_009566989             311 aa            linear   VRT 09-MAR-2023
DEFINITION  exosome complex component RRP43 [Cuculus canorus].
ACCESSION   XP_009566989
VERSION     XP_009566989.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568694.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566989.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..311
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..311
                     /product="exosome complex component RRP43"
                     /calculated_mol_wt=33688
     Region          41..301
                     /region_name="RNase_PH_RRP43"
                     /note="RRP43 subunit of eukaryotic exosome; cd11369"
                     /db_xref="CDD:206774"
     Site            order(79,81,96,98..100,115,117,122,139,142,146,168,173,
                     178,196..198,227,267..278,283,287)
                     /site_type="other"
                     /note="hexamer interface [polypeptide binding]"
                     /db_xref="CDD:206774"
     CDS             1..311
                     /gene="EXOSC8"
                     /coded_by="XM_009568694.2:1..936"
                     /db_xref="GeneID:104066124"
ORIGIN      
        1 mprqrhrprs rrspplpvat sgrqaqrfrd gsggamataf kmvepleyyr rflkencrpd
       61 grelgefrat tvnigsitta dgsalvkfgn ttvicgvkae laaptidsan kgyivpnvdl
      121 pslcstrfrs gppgeeaqaa sqfiadvien sqiiakedlc iadgklawvl ycdiicldyd
      181 gnildasafa llaalknvql psvtineetg lpevnlkqkn pliirkhpva tsfaifddtl
      241 livdptaeee dlatgtvtvv tddedrlcsv hkpggspltg aklqdcitra itrhkevkkl
      301 idkviksins k
//
LOCUS       XP_053907181             306 aa            linear   VRT 09-MAR-2023
DEFINITION  dolichyl-phosphate beta-glucosyltransferase isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053907181
VERSION     XP_053907181.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051206.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..306
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..306
                     /product="dolichyl-phosphate beta-glucosyltransferase
                     isoform X1"
                     /calculated_mol_wt=34624
     Region          71..289
                     /region_name="DPG_synthase"
                     /note="DPG_synthase is involved in protein N-linked
                     glycosylation; cd04188"
                     /db_xref="CDD:133031"
     Site            order(74,76,167)
                     /site_type="active"
                     /note="Ligand binding site [active]"
                     /db_xref="CDD:133031"
     Site            order(112,166..167)
                     /site_type="active"
                     /note="Putative Catalytic site [active]"
                     /db_xref="CDD:133031"
     Site            165..167
                     /site_type="active"
                     /note="DXD motif [active]"
                     /db_xref="CDD:133031"
     CDS             1..306
                     /gene="ALG5"
                     /coded_by="XM_054051206.1:63..983"
                     /db_xref="GeneID:104066162"
ORIGIN      
        1 malppallat aaalaalaal llvliciiah itakkmptlh rheeekyfin aegrkeslps
       61 ihdpptkels vvvpsyneed rlphmmdeal dylekrqkrd psftyevivv ndgskdqttq
      121 vamkyckkyg sdkvrvlslv knrgkggavr mgvfssrgkr ilmadadgat efadiekvee
      181 glknlqpwpn qmaiscgsra hlekdsiakr syfrtllmyg fhflvwflcv keirdtqcgf
      241 klltreaalq tfstlhierw afdvellyia qrlripiaev avnwteiedi llclmeyesg
      301 fsqvkq
//
LOCUS       XP_053907186             305 aa            linear   VRT 09-MAR-2023
DEFINITION  dolichyl-phosphate beta-glucosyltransferase isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053907186
VERSION     XP_053907186.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051211.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="dolichyl-phosphate beta-glucosyltransferase
                     isoform X2"
                     /calculated_mol_wt=34882
     Region          71..271
                     /region_name="DPG_synthase"
                     /note="DPG_synthase is involved in protein N-linked
                     glycosylation; cd04188"
                     /db_xref="CDD:133031"
     Site            order(74,76,167)
                     /site_type="active"
                     /note="Ligand binding site [active]"
                     /db_xref="CDD:133031"
     Site            order(112,166..167)
                     /site_type="active"
                     /note="Putative Catalytic site [active]"
                     /db_xref="CDD:133031"
     Site            165..167
                     /site_type="active"
                     /note="DXD motif [active]"
                     /db_xref="CDD:133031"
     CDS             1..305
                     /gene="ALG5"
                     /coded_by="XM_054051211.1:63..980"
                     /db_xref="GeneID:104066162"
ORIGIN      
        1 malppallat aaalaalaal llvliciiah itakkmptlh rheeekyfin aegrkeslps
       61 ihdpptkels vvvpsyneed rlphmmdeal dylekrqkrd psftyevivv ndgskdqttq
      121 vamkyckkyg sdkvrvlslv knrgkggavr mgvfssrgkr ilmadadgat efadiekvee
      181 glknlqpwpr syfrtllmyg fhflvwflcv keirdtqcgf klltreaalq tfstlhierw
      241 afdvellyia qrlripiaev avnwteiegs klvpfwswlq mgrdllfirl rymtgawqle
      301 trkcn
//
LOCUS       XP_053907198             325 aa            linear   VRT 09-MAR-2023
DEFINITION  dolichyl-phosphate beta-glucosyltransferase isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053907198
VERSION     XP_053907198.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051223.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..325
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..325
                     /product="dolichyl-phosphate beta-glucosyltransferase
                     isoform X3"
                     /calculated_mol_wt=37023
     Region          71..291
                     /region_name="DPG_synthase"
                     /note="DPG_synthase is involved in protein N-linked
                     glycosylation; cd04188"
                     /db_xref="CDD:133031"
     Site            order(74,76,167)
                     /site_type="active"
                     /note="Ligand binding site [active]"
                     /db_xref="CDD:133031"
     Site            order(112,166..167)
                     /site_type="active"
                     /note="Putative Catalytic site [active]"
                     /db_xref="CDD:133031"
     Site            165..167
                     /site_type="active"
                     /note="DXD motif [active]"
                     /db_xref="CDD:133031"
     CDS             1..325
                     /gene="ALG5"
                     /coded_by="XM_054051223.1:63..1040"
                     /db_xref="GeneID:104066162"
ORIGIN      
        1 malppallat aaalaalaal llvliciiah itakkmptlh rheeekyfin aegrkeslps
       61 ihdpptkels vvvpsyneed rlphmmdeal dylekrqkrd psftyevivv ndgskdqttq
      121 vamkyckkyg sdkvrvlslv knrgkggavr mgvfssrgkr ilmadadgat efadiekvee
      181 glknlqpwpn qmaiscgsra hlekdsiakr syfrtllmyg fhflvwflcv keirdtqcgf
      241 klltreaalq tfstlhierw afdvellyia qrlripiaev avnwteiegs klvpfwswlq
      301 mgrdllfirl rymtgawqle trkcn
//
LOCUS       XP_053907209             103 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H4 [Cuculus canorus].
ACCESSION   XP_053907209
VERSION     XP_053907209.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051234.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..103
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..103
                     /product="histone H4"
                     /calculated_mol_wt=11236
     Region          1..103
                     /region_name="PLN00035"
                     /note="histone H4; Provisional"
                     /db_xref="CDD:177669"
     CDS             1..103
                     /gene="LOC104057258"
                     /coded_by="XM_054051234.1:16..327"
                     /db_xref="GeneID:104057258"
ORIGIN      
        1 msgrgkggkg lgkggakrhr kvlrdniqgi tkpairrlar rggvkrisgl iyeetrgvlk
       61 vflenvirda vtytehakrk tvtamdvvya lkrqgrtlyg fgg
//
LOCUS       XP_053907217             892 aa            linear   VRT 09-MAR-2023
DEFINITION  biotin--protein ligase isoform X1 [Cuculus canorus].
ACCESSION   XP_053907217
VERSION     XP_053907217.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051242.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..892
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..892
                     /product="biotin--protein ligase isoform X1"
                     /calculated_mol_wt=100238
     Region          <453..556
                     /region_name="BPL_N"
                     /note="Biotin-protein ligase, N terminal; pfam09825"
                     /db_xref="CDD:462915"
     Region          660..874
                     /region_name="BirA2"
                     /note="Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme
                     transport and metabolism]; COG0340"
                     /db_xref="CDD:440109"
     CDS             1..892
                     /gene="HLCS"
                     /coded_by="XM_054051242.1:31..2709"
                     /db_xref="GeneID:104064784"
ORIGIN      
        1 mlitlcylyl warwglrsaa lirrtvrrlh rsrcsftfcc crsagprarq prrpappeer
       61 vclrignkvf ftdetqffdd lnrwslllis pfiypekllk aehiafvtes isaptdnlqk
      121 vpgsskeivk wsdycsplay kpgepyklia easvdnfsnl giafmedrle mdngmvpqki
      181 vsvhlqestl kelaqvapsv keqsvsdkem devtpaatsg ttvksrlgva esvgqgdeek
      241 sklekesehe desnslsdke agsgehhhlh lsscheclql enstiesvrf asaenipels
      301 ddcdskqeek dddcltkkik rvnlagkppn vliylgseta keefqqvksi lqecidadsy
      361 tiyqlheeqv lkapwidnsl lliiateepi seenhkqfmk flckggkilg fsssftfdgi
      421 qirrksklrn avhelvvskm dsteiklnll vsgcifeevr kediskvktl srlnnadkdi
      481 vivhltygdn ggeavlsqar leldinsmdv qteedfnllk isnakryevl keilislgln
      541 celsgtpmlt piyllssdee ihlsflkwle gnvdaeglra sskvslkfvs yceskmeitp
      601 slmpvitemg nfssehfklk tyqqnlqtkk lgkillftev ttttmnlldg lmfelpeemg
      661 liaiavrqtq gkgrggnvwl spigcalstl hitiplhsnl gqripfiqhl vslavvesvr
      721 sipgyedidl rvkwpndiyy sdlmklggvl vnstliettf hiligfgfnv snsnpticin
      781 dlitkfnkee gttlkplttd cliartvtvl eklidifqek gpngvlpryy kywihsgkqv
      841 rlyneegpta wivgiddygf lqvheegkgv esvhpdgnsf dmlknlivpk hr
//
LOCUS       XP_053907222             728 aa            linear   VRT 09-MAR-2023
DEFINITION  biotin--protein ligase isoform X2 [Cuculus canorus].
ACCESSION   XP_053907222
VERSION     XP_053907222.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051247.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..728
                     /product="biotin--protein ligase isoform X2"
                     /calculated_mol_wt=81362
     Region          <289..392
                     /region_name="BPL_N"
                     /note="Biotin-protein ligase, N terminal; pfam09825"
                     /db_xref="CDD:462915"
     Region          496..710
                     /region_name="BirA2"
                     /note="Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme
                     transport and metabolism]; COG0340"
                     /db_xref="CDD:440109"
     CDS             1..728
                     /gene="HLCS"
                     /coded_by="XM_054051247.1:408..2594"
                     /db_xref="GeneID:104064784"
ORIGIN      
        1 medrlemdng mvpqkivsvh lqestlkela qvapsvkeqs vsdkemdevt paatsgttvk
       61 srlgvaesvg qgdeekskle kesehedesn slsdkeagsg ehhhlhlssc heclqlenst
      121 iesvrfasae nipelsddcd skqeekdddc ltkkikrvnl agkppnvliy lgsetakeef
      181 qqvksilqec idadsytiyq lheeqvlkap widnslllii ateepiseen hkqfmkflck
      241 ggkilgfsss ftfdgiqirr ksklrnavhe lvvskmdste iklnllvsgc ifeevrkedi
      301 skvktlsrln nadkdivivh ltygdnggea vlsqarleld insmdvqtee dfnllkisna
      361 kryevlkeil islglncels gtpmltpiyl lssdeeihls flkwlegnvd aeglrasskv
      421 slkfvsyces kmeitpslmp vitemgnfss ehfklktyqq nlqtkklgki llftevtttt
      481 mnlldglmfe lpeemgliai avrqtqgkgr ggnvwlspig calstlhiti plhsnlgqri
      541 pfiqhlvsla vvesvrsipg yedidlrvkw pndiyysdlm klggvlvnst liettfhili
      601 gfgfnvsnsn pticindlit kfnkeegttl kplttdclia rtvtvlekli difqekgpng
      661 vlpryykywi hsgkqvrlyn eegptawivg iddygflqvh eegkgvesvh pdgnsfdmlk
      721 nlivpkhr
//
LOCUS       XP_053907225             715 aa            linear   VRT 09-MAR-2023
DEFINITION  biotin--protein ligase isoform X3 [Cuculus canorus].
ACCESSION   XP_053907225
VERSION     XP_053907225.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051250.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..715
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..715
                     /product="biotin--protein ligase isoform X3"
                     /calculated_mol_wt=80070
     Region          <276..379
                     /region_name="BPL_N"
                     /note="Biotin-protein ligase, N terminal; pfam09825"
                     /db_xref="CDD:462915"
     Region          483..697
                     /region_name="BirA2"
                     /note="Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme
                     transport and metabolism]; COG0340"
                     /db_xref="CDD:440109"
     CDS             1..715
                     /gene="HLCS"
                     /coded_by="XM_054051250.1:133..2280"
                     /db_xref="GeneID:104064784"
ORIGIN      
        1 mewchrrlfe stlkelaqva psvkeqsvsd kemdevtpaa tsgttvksrl gvaesvgqgd
       61 eeksklekes ehedesnsls dkeagsgehh hlhlsschec lqlensties vrfasaenip
      121 elsddcdskq eekdddcltk kikrvnlagk ppnvliylgs etakeefqqv ksilqecida
      181 dsytiyqlhe eqvlkapwid nsllliiate episeenhkq fmkflckggk ilgfsssftf
      241 dgiqirrksk lrnavhelvv skmdsteikl nllvsgcife evrkediskv ktlsrlnnad
      301 kdivivhlty gdnggeavls qarleldins mdvqteedfn llkisnakry evlkeilisl
      361 glncelsgtp mltpiyllss deeihlsflk wlegnvdaeg lrasskvslk fvsyceskme
      421 itpslmpvit emgnfssehf klktyqqnlq tkklgkillf tevttttmnl ldglmfelpe
      481 emgliaiavr qtqgkgrggn vwlspigcal stlhitiplh snlgqripfi qhlvslavve
      541 svrsipgyed idlrvkwpnd iyysdlmklg gvlvnstlie ttfhiligfg fnvsnsnpti
      601 cindlitkfn keegttlkpl ttdcliartv tvleklidif qekgpngvlp ryykywihsg
      661 kqvrlyneeg ptawivgidd ygflqvheeg kgvesvhpdg nsfdmlknli vpkhr
//
LOCUS       XP_053907238             773 aa            linear   VRT 09-MAR-2023
DEFINITION  single-minded homolog 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053907238
VERSION     XP_053907238.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051263.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..773
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..773
                     /product="single-minded homolog 2 isoform X1"
                     /calculated_mol_wt=87480
     Region          1..74
                     /region_name="bHLH-PAS_SIM2"
                     /note="basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS)
                     domain found in single-minded homolog 2 (SIM2) and similar
                     proteins; cd19739"
                     /db_xref="CDD:381582"
     Site            order(2,4..6,10,12..13,17,38..39)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381582"
     Site            order(15..16,19..20,22..23,40,43,47,49..50,54,56)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381582"
     Region          79..140
                     /region_name="PAS"
                     /note="PAS domain; smart00091"
                     /db_xref="CDD:214512"
     Region          249..335
                     /region_name="PAS_3"
                     /note="PAS fold; pfam08447"
                     /db_xref="CDD:430001"
     Site            order(251,255,261,274..277,303,308)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:238075"
     Site            order(271,275,283,286..287,315,317)
                     /site_type="other"
                     /note="heme pocket [chemical binding]"
                     /db_xref="CDD:238075"
     Region          364..645
                     /region_name="SIM_C"
                     /note="Single-minded protein C-terminus; pfam06621"
                     /db_xref="CDD:461963"
     CDS             1..773
                     /gene="SIM2"
                     /coded_by="XM_054051263.1:150..2471"
                     /db_xref="GeneID:104064735"
ORIGIN      
        1 mkeksknaak trrekengef yelakllplp saitsqldka siirlttsyl kmravfpegl
       61 gdawgqpsri gpldnvakel gshllqtldg fvfvvasdgk imyisetasv hlglsqvelt
      121 gnsiyeyihp sdhdemtavl tahqplhphl lqvwfmlsey eiersfflrm kcvlakrnag
      181 ltcsgykvih csgylkirqy mldmslydsc yqivglvavg qslppsaite iklhsnmfmf
      241 rasldlklif ldsrvteltg yepqdliekt lyhhvhgcdv fhlryahhll lvkgqvttky
      301 yrllskhggw vwvqsyativ hnsrssrphc ivsvnyvltd ieykelqlsl dqvtisksqf
      361 scrnsvstsq etrkivkpks nkmkaklrtt pypqqqyssf qtdklecsqv gnwrsspavn
      421 aatiqeqnfh sensellyap syslpfsyhy ghfpvdshvf sskkqmlpsk fgqsqgapce
      481 varfflstlq tngecqwhya nslvpnsqsp sknlpeqpvn iirhnlaqsy evpisnrrys
      541 qdtlsdnfts ctasmpdsry keqiydssiv kptkienriq pphhlikeen kfafnrniqe
      601 kmninessfs nsiansllpk secfqskaig qlshllpmps vyeqtrrici kepkyghish
      661 datnldelds dermtvkldh dseservmdv rpsgqvpfvl lnyhhvlakh gtfqtsscta
      721 tghvgenygy sseevntfiy knqspssass pethkesalp hyigtsviia ngr
//
LOCUS       XP_009565395             767 aa            linear   VRT 09-MAR-2023
DEFINITION  single-minded homolog 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_009565395
VERSION     XP_009565395.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009567100.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009565395.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..767
                     /product="single-minded homolog 2 isoform X2"
                     /calculated_mol_wt=86716
     Region          1..74
                     /region_name="bHLH-PAS_SIM2"
                     /note="basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS)
                     domain found in single-minded homolog 2 (SIM2) and similar
                     proteins; cd19739"
                     /db_xref="CDD:381582"
     Site            order(2,4..6,10,12..13,17,38..39)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381582"
     Site            order(15..16,19..20,22..23,40,43,47,49..50,54,56)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381582"
     Region          88..>158
                     /region_name="PAS"
                     /note="PAS domain; PAS motifs appear in archaea,
                     eubacteria and eukarya. Probably the most surprising
                     identification of a PAS domain was that in EAG-like
                     K+-channels. PAS domains have been found to bind ligands,
                     and to act as sensors for light and oxygen in...; cd00130"
                     /db_xref="CDD:238075"
     Site            order(104,108,114,127..130,156)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:238075"
     Region          243..329
                     /region_name="PAS_3"
                     /note="PAS fold; pfam08447"
                     /db_xref="CDD:430001"
     Site            order(245,249,255,268..271,297,302)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:238075"
     Site            order(265,269,277,280..281,309,311)
                     /site_type="other"
                     /note="heme pocket [chemical binding]"
                     /db_xref="CDD:238075"
     Region          358..639
                     /region_name="SIM_C"
                     /note="Single-minded protein C-terminus; pfam06621"
                     /db_xref="CDD:461963"
     CDS             1..767
                     /gene="SIM2"
                     /coded_by="XM_009567100.2:150..2453"
                     /db_xref="GeneID:104064735"
ORIGIN      
        1 mkeksknaak trrekengef yelakllplp saitsqldka siirlttsyl kmravfpegl
       61 gdawgqpsri gpldnvakel gshllqtldg fvfvvasdgk imyisetasv hlglsqvelt
      121 gnsiyeyihp sdhdemtavl tahqplhphl lqeyeiersf flrmkcvlak rnagltcsgy
      181 kvihcsgylk irqymldmsl ydscyqivgl vavgqslpps aiteiklhsn mfmfrasldl
      241 klifldsrvt eltgyepqdl iektlyhhvh gcdvfhlrya hhlllvkgqv ttkyyrllsk
      301 hggwvwvqsy ativhnsrss rphcivsvny vltdieykel qlsldqvtis ksqfscrnsv
      361 stsqetrkiv kpksnkmkak lrttpypqqq yssfqtdkle csqvgnwrss pavnaatiqe
      421 qnfhsensel lyapsyslpf syhyghfpvd shvfsskkqm lpskfgqsqg apcevarffl
      481 stlqtngecq whyanslvpn sqspsknlpe qpvniirhnl aqsyevpisn rrysqdtlsd
      541 nftsctasmp dsrykeqiyd ssivkptkie nriqpphhli keenkfafnr niqekmnine
      601 ssfsnsians llpksecfqs kaigqlshll pmpsvyeqtr ricikepkyg hishdatnld
      661 eldsdermtv kldhdseser vmdvrpsgqv pfvllnyhhv lakhgtfqts sctatghvge
      721 nygysseevn tfiyknqsps sasspethke salphyigts viiangr
//
LOCUS       XP_053907259             571 aa            linear   VRT 09-MAR-2023
DEFINITION  chromatin assembly factor 1 subunit B [Cuculus canorus].
ACCESSION   XP_053907259
VERSION     XP_053907259.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051284.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..571
                     /product="chromatin assembly factor 1 subunit B"
                     /calculated_mol_wt=62935
     Region          <13..375
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          70..127
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          132..168
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          175..210
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          265..305
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          312..350
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          356..398
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          388..554
                     /region_name="CAF-1_p60_C"
                     /note="Chromatin assembly factor complex 1 subunit p60,
                     C-terminal; pfam15512"
                     /db_xref="CDD:464756"
     CDS             1..571
                     /gene="CHAF1B"
                     /coded_by="XM_054051284.1:53..1768"
                     /db_xref="GeneID:104064738"
ORIGIN      
        1 mkvitceiaw hnkepvysld fqhgadgkin rlasagvdta vriwkvekgp dgkaivefls
       61 nlarhtkavn vvrfspsgei lasggddavi llwklndske seplvfqded eaqlnkenwt
      121 vvktlrghle dvydicwnsd gnymasasvd ntaimwdvnk gqkvsilneh ksyvqgitwd
      181 plgqyvatls cdrvlrvynt qtkrvafnvt kmpsgsgaeg esrsyrifhd dsmksffrrl
      241 sftpdgsyll tpagcvesge nvtnttyvfs rnnlkrpvgh lpcpgkatla vrccpvyfel
      301 rqafskdeis qkstpalfnm pyrlvfavas edsvlfydte qsfpfgyvsn ihyhtlsdis
      361 wssdgaflai sstdgycsfv tfekdelgip lkekpqinvr tpsaaekkvk ksqshkaisp
      421 gsrltegtsp srvadpstpa lqprtptaag kdfpstpvgi knvpvsssde rkisqpasqs
      481 tkvnqprrit lntlqawskt srrvnliplk pdtptpaltd tvpipssere cerplpsdds
      541 lqnppaskrp rteevslpas aedqiscdsn k
//
LOCUS       XP_009565396             236 aa            linear   VRT 09-MAR-2023
DEFINITION  claudin-14 [Cuculus canorus].
ACCESSION   XP_009565396
VERSION     XP_009565396.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009567101.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..236
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..236
                     /product="claudin-14"
                     /calculated_mol_wt=25171
     Region          23..181
                     /region_name="PMP22_Claudin"
                     /note="PMP-22/EMP/MP20/Claudin family; cl21598"
                     /db_xref="CDD:473919"
     CDS             1..236
                     /gene="CLDN14"
                     /coded_by="XM_009567101.2:49..759"
                     /db_xref="GeneID:104064737"
ORIGIN      
        1 massavqllg fslsllglig tliatilphw wrtahvgtni itavayikgl wmecvwhstg
       61 iyqcqvhrsq lalprdlqaa rammviscvl svlacviavi gmkctqcakg tsakdsiavs
      121 ggivfilagl fclvpvswtt ndvvtdfynp vlpsgmkyei gqalylgfvs asltilggal
      181 lctssqchgn etpyqtqpss irriapsyrp ptvykgnhas sltsashsgy rlndyv
//
LOCUS       XP_009554896             418 aa            linear   VRT 09-MAR-2023
DEFINITION  polymerase delta-interacting protein 3 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009554896
VERSION     XP_009554896.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556601.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..418
                     /product="polymerase delta-interacting protein 3 isoform
                     X1"
                     /calculated_mol_wt=45878
     Region          278..346
                     /region_name="RRM_SKAR"
                     /note="RNA recognition motif (RRM) found in S6K1
                     Aly/REF-like target (SKAR) and similar proteins; cd12681"
                     /db_xref="CDD:410082"
     CDS             1..418
                     /gene="POLDIP3"
                     /coded_by="XM_009556601.2:83..1339"
                     /db_xref="GeneID:104055477"
ORIGIN      
        1 madlsldeli rkrgvtlkgr lntrpvfggv rsrigvqqni lnrspppavs fqrtfdarqk
       61 igltdarhkl gvkdareklv qkdarfkikg kmqdaremln srkqqsvaae kvtkvvdare
      121 kislkrstpa tisptmgtvn pamkitktiq qkapvpgqsh ppgmrinvvn nhthkqglyd
      181 meddddsisp lsskrmkitt tnsflhnatg lsgnkfslsk tvpltkvvqn dtytappapp
      241 spmrtkaltn msrtlvtkee ppkepapvel afsplegtkm tvnnlhprvt eedivelfcv
      301 cgalkrarlv hpgvaevvfv kkedaitayk kynnrcldgq pmkcnlhmng nvitsdqpil
      361 lrlsdtpsvk kegeprrssa sassnppaev dpdtilkalf kssgvsasvq ptefkikl
//
LOCUS       XP_053907296             417 aa            linear   VRT 09-MAR-2023
DEFINITION  polymerase delta-interacting protein 3 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053907296
VERSION     XP_053907296.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051321.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..417
                     /product="polymerase delta-interacting protein 3 isoform
                     X2"
                     /calculated_mol_wt=45750
     Region          277..345
                     /region_name="RRM_SKAR"
                     /note="RNA recognition motif (RRM) found in S6K1
                     Aly/REF-like target (SKAR) and similar proteins; cd12681"
                     /db_xref="CDD:410082"
     CDS             1..417
                     /gene="POLDIP3"
                     /coded_by="XM_054051321.1:83..1336"
                     /db_xref="GeneID:104055477"
ORIGIN      
        1 madlsldeli rkrgvtlkgr lntrpvfggv rsrigvqqni lnrspppavs fqrtfdarqk
       61 igltdarhkl gvkdareklv qkdarfkikg kmqdaremln srkqqsvaae kvtkvvdare
      121 kislkrstpa tisptmgtvn pamkitktiq kapvpgqshp pgmrinvvnn hthkqglydm
      181 eddddsispl sskrmkittt nsflhnatgl sgnkfslskt vpltkvvqnd tytappapps
      241 pmrtkaltnm srtlvtkeep pkepapvela fsplegtkmt vnnlhprvte edivelfcvc
      301 galkrarlvh pgvaevvfvk kedaitaykk ynnrcldgqp mkcnlhmngn vitsdqpill
      361 rlsdtpsvkk egeprrssas assnppaevd pdtilkalfk ssgvsasvqp tefkikl
//
LOCUS       XP_053907306             539 aa            linear   VRT 09-MAR-2023
DEFINITION  APC membrane recruitment protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053907306
VERSION     XP_053907306.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051331.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..539
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..539
                     /product="APC membrane recruitment protein 2 isoform X1"
                     /calculated_mol_wt=57053
     Region          60..450
                     /region_name="WTX"
                     /note="WTX protein; pfam09422"
                     /db_xref="CDD:462794"
     CDS             1..539
                     /gene="AMER2"
                     /coded_by="XM_054051331.1:147..1766"
                     /db_xref="GeneID:104064223"
ORIGIN      
        1 mdsrcgcaep pateqpagri nktafklfkr rkgggampsi fgvrsrggge eakgggaagm
       61 vrsrthdgla eaameaggkd epapargapg gpgpvakshs ffsllrkngk aegaerrpgg
      121 rqkkglrsif gsvrwhrkdk tgkeergevs esppglimpg sltaslecik eeppkpcgee
      181 rpeagpgrdp eapltgdvpv atnppvepqr draqepaaap dpsssvdpps epsadriclm
      241 fadvtslksf dsltgcgdii adheedaggr sggcekslpa agrlgaakkr ptvvayqggg
      301 eemaspdqvd dtclqefwem lsqteetqae ekkpeglken rgtegaqnkv avksgglhqi
      361 pihlshkeeq kgrekeqqeg vpnsdegywd sttpgpeedg sasiqketip rdsysgdaly
      421 dlyaepdenp pgapveevvt ctprskpvsp itttcslktp sstvkdskip isikhlsshp
      481 pshgmdtsns hhvthhhlak semhrtkipv skvlvrrvsn rglagttvka aayqdsakk
//
LOCUS       XP_053907313             480 aa            linear   VRT 09-MAR-2023
DEFINITION  APC membrane recruitment protein 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053907313
VERSION     XP_053907313.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051338.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..480
                     /product="APC membrane recruitment protein 2 isoform X2"
                     /calculated_mol_wt=50890
     Region          60..391
                     /region_name="WTX"
                     /note="WTX protein; pfam09422"
                     /db_xref="CDD:462794"
     CDS             1..480
                     /gene="AMER2"
                     /coded_by="XM_054051338.1:147..1589"
                     /db_xref="GeneID:104064223"
ORIGIN      
        1 mdsrcgcaep pateqpagri nktafklfkr rkgggampsi fgvrsrggge eakgggaagm
       61 vrsrthdgla eaameaggkd epapargapg gpgpvakshs ffsllrkngk aegaerrpgg
      121 rqkkglrsif gsvrwhrkdk tgkeergevs esppglimpg sltaslecik eeppkpcgee
      181 rpeagpgrdp eapltgcgdi iadheedagg rsggcekslp aagrlgaakk rptvvayqgg
      241 geemaspdqv ddtclqefwe mlsqteetqa eekkpeglke nrgtegaqnk vavksgglhq
      301 ipihlshkee qkgrekeqqe gvpnsdegyw dsttpgpeed gsasiqketi prdsysgdal
      361 ydlyaepden ppgapveevv tctprskpvs pitttcslkt psstvkdski pisikhlssh
      421 ppshgmdtsn shhvthhhla ksemhrtkip vskvlvrrvs nrglagttvk aaayqdsakk
//
LOCUS       XP_053907326             911 aa            linear   VRT 09-MAR-2023
DEFINITION  CWF19-like protein 2 [Cuculus canorus].
ACCESSION   XP_053907326
VERSION     XP_053907326.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051351.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..911
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..911
                     /product="CWF19-like protein 2"
                     /calculated_mol_wt=105864
     Region          680..804
                     /region_name="HIT_like"
                     /note="HIT family: HIT (Histidine triad) proteins, named
                     for a motif related to the sequence HxHxH/Qxx (x, a
                     hydrophobic amino acid), are a superfamily of nucleotide
                     hydrolases and transferases, which act on the
                     alpha-phosphate of ribonucleotides. On the basis...;
                     cl00228"
                     /db_xref="CDD:469672"
     Region          813..907
                     /region_name="CwfJ_C_2"
                     /note="Protein similar to CwfJ C-terminus 2; pfam04676"
                     /db_xref="CDD:461388"
     CDS             1..911
                     /gene="CWF19L2"
                     /coded_by="XM_054051351.1:62..2797"
                     /db_xref="GeneID:104055359"
ORIGIN      
        1 mmasgfeser slaerreqrq rerqellaqa kikyekeqkr ellkhlrged twmlddvner
       61 veqlekehsv qkkkkkekhs kkakkekkkn kkhksekkdd lsdsssdssv ewvesnvsqp
      121 dnaekawkvn kqsdavkeps lqreewmnld flslkttsva avkgerhkdk vlerqkaqem
      181 eqamlserel npywkdggtg lppekdeaas ikkvsvveda glswlrksyq rmkeqaerek
      241 rnfedivaer ygsmeifqsr leeaekvasr kenyhrsgkw rkadysesek ekkeqpmkke
      301 trdeadrngn mfggctreky grgwmkedkg ykrdtsrddq ecghssmdse frgysskaek
      361 yshekrsqgk ssslsnmkhk flkpseddls sysasrdyks qqsssgllah sslssrcqkp
      421 gedtalwtkt htedhneklm sdqkssgtke qiddssrert psdkkeklrq enpgdipekk
      481 qilsdsvtsc srhtskdepp rvlseeemnr lgarivkael mgdmelaskl qaelenarkl
      541 keaqgqisak sgrqgsnhqk deqvvlvrtd qsgrawpvta paepqepkgg rrkrqmvpth
      601 vdkervryfq dddnmnledl vrnekmrtae dqnslfmrma sklmektdre yytlddmfvs
      661 kaakrarsge eeeiqrrkai rehqqlaarm ekcpycfdss elskhliiai gtkvylslps
      721 nqslteghcl iaplqhhtaa tlldediwee iqmfrnalvk mfeakdldcv fletnmsmkk
      781 ryhmvyecip lpkevgdmap iyfkkaimes deewsvnkkl idlsskdvrk svpkglpyfs
      841 vdfglqggfa hviedqhkfp hyfgkeiigg mldleprlwr kgirqnfedq rkkvlqfaqw
      901 wkpydftkkk e
//
LOCUS       XP_053907337             244 aa            linear   VRT 09-MAR-2023
DEFINITION  GS homeobox 1 [Cuculus canorus].
ACCESSION   XP_053907337
VERSION     XP_053907337.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051362.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..244
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..244
                     /product="GS homeobox 1"
                     /calculated_mol_wt=26461
     Region          137..193
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     CDS             1..244
                     /gene="GSX1"
                     /coded_by="XM_054051362.1:1..735"
                     /db_xref="GeneID:104064231"
ORIGIN      
        1 mprsflvdsl vlreagekkg egspppplfp yavhpshplp glpagachar kagllcvcpl
       61 cvtasqlhpp ppaiplikas fppfgsqych splarqqhsv svghapalyq gayplpdprq
      121 fhcisvdsts sqlpsskrmr taftstqlle lerefasnmy lsrlrrieia tylnlsekqv
      181 kiwfqnrrvk hkkegktssh rggggghsck csslsttkcs eddedlrmsp sssgkddrgl
      241 avtp
//
LOCUS       XP_053907349            1970 aa            linear   VRT 09-MAR-2023
DEFINITION  exophilin-5 isoform X1 [Cuculus canorus].
ACCESSION   XP_053907349
VERSION     XP_053907349.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051374.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1970
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1970
                     /product="exophilin-5 isoform X1"
                     /calculated_mol_wt=219925
     Region          11..>49
                     /region_name="PHD_SF"
                     /note="PHD finger superfamily; cl22851"
                     /db_xref="CDD:473978"
     CDS             1..1970
                     /gene="EXPH5"
                     /coded_by="XM_054051374.1:155..6067"
                     /db_xref="GeneID:104055335"
ORIGIN      
        1 mtaaprgpdl sflneeeaka ifqvlqrdse lrraekdrvs kllkrkksei glqgvtgewf
       61 eeiqkkkfqd yidvnkmiks plehqlrktk ntshkelkms shtnhqaqkn tsasflgfrs
      121 pfawlfsfrk srknqaqkqp rydssasppa kaeemataem cnspmsaets gpsfdanqne
      181 vmekstqewn eqleeeffsi lndlddqlaq eqakdpldrt vstgsasniq yssvfptskr
      241 qtanreqhrn dwsdipsmff pdglrtirak dehklfmrpr klhsayinwh qtafqedsky
      301 gdtvdgnphl lskrlssvsf grssegslyp psvtqnsgfr hrtcmnrdta grsysvcslr
      361 rcpssvssdq lsasglqqpl aresnngfvp rfgrqnpkri plssivwnnt adspgqtqek
      421 mfktqslmef hatdhcrnss slqetkkyac yhskhhykrs isssncfsrv sspdkatspl
      481 pfdnwenypl yksesnlsrs ycrdaslgkl yanqknsygk kdsycswadi pqyysdevfi
      541 speasfdvim anlndqqwsh aknskfgsqc lrndlhvysp enahmkritr sasrtssefs
      601 egcqpwlscs savsgirsde svfpnlkdqt kpiglnrnsv vvtrrntkad faqledaegm
      661 klsdedmllq slpqqadtny idtqrfpsns pasamwqsga slsntvrskr qtqaaargdi
      721 akmytsngdk rniqmkendc ppnssvfsqp pcilpadksr kepflpsrke wehnlhygak
      781 resikqdnrs teainqatpk rqssllnvas apstenlass qdilscpper spcssqsspe
      841 alshkdnskc lgtrssvnct vtesqakagk saevsrigvt kkisqrtlqn tstlitkdyn
      901 gqfttsspqi vssgniyths fdgdpkaseh slryfcfekg sgkirgnspc verlhkqdsl
      961 lkhssscsit gsprrnslks pdplviyytl prksasiags itsgtpislp resrtrcdcl
     1021 gsetacrnna fcsnqrdvsc lesnhsflta aslnaatsnk vypspltksp sdsvcrstsa
     1081 eltdrckhls rrescefsdc ketgnflqkf kttstftvcv dedhikyhel vsiyytlprr
     1141 hsrtfcnlfr dkqedadlpc pkenaqspri rnkkneghvs lanvffpsnl ekevpsysts
     1201 alvtsqnlgt aadseeensh lppgsekicp sksvsmvhnr kdssaglpla envlsdmvtk
     1261 eisfggpqat aiatksgkai saasssqste vylkekkeiv qtatplvstl stppkpgrrl
     1321 vnplcststn kssmqkgnse kgcqppklnt tknlnslllh pgkksslgrn sntecadvll
     1381 spaedrhrdg tevkqrvnll hqntrlynnk fsglqlrads srknannlns cskvlsesqn
     1441 kaavvntasn tdplqqldev fstdtdklkn srikkeqipv itqmgtdcsg lqeserhseg
     1501 slnvnckdkv lrvtqdqklt esagdenkfl sdctrdkvkd iekrknrssi knklaavykt
     1561 srkfssknlp pkphisnifs qndgsatsle adlpldslis mdshqpflql dnenqnhsld
     1621 pnkntlrprt tenkknenqn dpsllvnntn wrsftssytq keaispkktt mkvenrpslt
     1681 tlfpdkavtt rnknsqtfel kvesksqpvs psattlepld dekrrassra cspplplltd
     1741 knsntyinsc lqedicpeqn ftsqaalgqw qnmpqsaslk nanlhsyqlh kshaksqrer
     1801 hlsesicard shetfalgsn ilakdgirgk rfksysells cdenenwasd nekchstrnl
     1861 mypsvefgif gkeqqlaflq nikrsltegr lwrpcllnnp gafrdeenpi nraellssss
     1921 agskmsstas spreptdiyq edpaaysdsd sdtttddeyy ldeidkesel
//
LOCUS       XP_053907359            1894 aa            linear   VRT 09-MAR-2023
DEFINITION  exophilin-5 isoform X2 [Cuculus canorus].
ACCESSION   XP_053907359
VERSION     XP_053907359.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051384.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1894
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1894
                     /product="exophilin-5 isoform X2"
                     /calculated_mol_wt=211061
     CDS             1..1894
                     /gene="EXPH5"
                     /coded_by="XM_054051384.1:243..5927"
                     /db_xref="GeneID:104055335"
ORIGIN      
        1 miksplehql rktkntshke lkmsshtnhq aqkntsasfl gfrspfawlf sfrksrknqa
       61 qkqprydssa sppakaeema taemcnspms aetsgpsfda nqnevmekst qewneqleee
      121 ffsilndldd qlaqeqakdp ldrtvstgsa sniqyssvfp tskrqtanre qhrndwsdip
      181 smffpdglrt irakdehklf mrprklhsay inwhqtafqe dskygdtvdg nphllskrls
      241 svsfgrsseg slyppsvtqn sgfrhrtcmn rdtagrsysv cslrrcpssv ssdqlsasgl
      301 qqplaresnn gfvprfgrqn pkriplssiv wnntadspgq tqekmfktqs lmefhatdhc
      361 rnssslqetk kyacyhskhh ykrsisssnc fsrvsspdka tsplpfdnwe nyplyksesn
      421 lsrsycrdas lgklyanqkn sygkkdsycs wadipqyysd evfispeasf dvimanlndq
      481 qwshaknskf gsqclrndlh vyspenahmk ritrsasrts sefsegcqpw lscssavsgi
      541 rsdesvfpnl kdqtkpigln rnsvvvtrrn tkadfaqled aegmklsded mllqslpqqa
      601 dtnyidtqrf psnspasamw qsgaslsntv rskrqtqaaa rgdiakmyts ngdkrniqmk
      661 endcppnssv fsqppcilpa dksrkepflp srkewehnlh ygakresikq dnrsteainq
      721 atpkrqssll nvasapsten lassqdilsc pperspcssq sspealshkd nskclgtrss
      781 vnctvtesqa kagksaevsr igvtkkisqr tlqntstlit kdyngqftts spqivssgni
      841 ythsfdgdpk asehslryfc fekgsgkirg nspcverlhk qdsllkhsss csitgsprrn
      901 slkspdplvi yytlprksas iagsitsgtp islpresrtr cdclgsetac rnnafcsnqr
      961 dvsclesnhs fltaaslnaa tsnkvypspl tkspsdsvcr stsaeltdrc khlsrresce
     1021 fsdcketgnf lqkfkttstf tvcvdedhik yhelvsiyyt lprrhsrtfc nlfrdkqeda
     1081 dlpcpkenaq sprirnkkne ghvslanvff psnlekevps ystsalvtsq nlgtaadsee
     1141 enshlppgse kicpsksvsm vhnrkdssag lplaenvlsd mvtkeisfgg pqataiatks
     1201 gkaisaasss qstevylkek keivqtatpl vstlstppkp grrlvnplcs tstnkssmqk
     1261 gnsekgcqpp klnttknlns lllhpgkkss lgrnsnteca dvllspaedr hrdgtevkqr
     1321 vnllhqntrl ynnkfsglql radssrknan nlnscskvls esqnkaavvn tasntdplqq
     1381 ldevfstdtd klknsrikke qipvitqmgt dcsglqeser hsegslnvnc kdkvlrvtqd
     1441 qkltesagde nkflsdctrd kvkdiekrkn rssiknklaa vyktsrkfss knlppkphis
     1501 nifsqndgsa tsleadlpld slismdshqp flqldnenqn hsldpnkntl rprttenkkn
     1561 enqndpsllv nntnwrsfts sytqkeaisp kkttmkvenr pslttlfpdk avttrnknsq
     1621 tfelkvesks qpvspsattl eplddekrra ssracspplp lltdknsnty insclqedic
     1681 peqnftsqaa lgqwqnmpqs aslknanlhs yqlhkshaks qrerhlsesi cardshetfa
     1741 lgsnilakdg irgkrfksys ellscdenen wasdnekchs trnlmypsve fgifgkeqql
     1801 aflqnikrsl tegrlwrpcl lnnpgafrde enpinraell ssssagskms stassprept
     1861 diyqedpaay sdsdsdtttd deyyldeidk esel
//
LOCUS       XP_053907367            1894 aa            linear   VRT 09-MAR-2023
DEFINITION  exophilin-5 isoform X2 [Cuculus canorus].
ACCESSION   XP_053907367
VERSION     XP_053907367.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051392.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1894
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1894
                     /product="exophilin-5 isoform X2"
                     /calculated_mol_wt=211061
     CDS             1..1894
                     /gene="EXPH5"
                     /coded_by="XM_054051392.1:234..5918"
                     /db_xref="GeneID:104055335"
ORIGIN      
        1 miksplehql rktkntshke lkmsshtnhq aqkntsasfl gfrspfawlf sfrksrknqa
       61 qkqprydssa sppakaeema taemcnspms aetsgpsfda nqnevmekst qewneqleee
      121 ffsilndldd qlaqeqakdp ldrtvstgsa sniqyssvfp tskrqtanre qhrndwsdip
      181 smffpdglrt irakdehklf mrprklhsay inwhqtafqe dskygdtvdg nphllskrls
      241 svsfgrsseg slyppsvtqn sgfrhrtcmn rdtagrsysv cslrrcpssv ssdqlsasgl
      301 qqplaresnn gfvprfgrqn pkriplssiv wnntadspgq tqekmfktqs lmefhatdhc
      361 rnssslqetk kyacyhskhh ykrsisssnc fsrvsspdka tsplpfdnwe nyplyksesn
      421 lsrsycrdas lgklyanqkn sygkkdsycs wadipqyysd evfispeasf dvimanlndq
      481 qwshaknskf gsqclrndlh vyspenahmk ritrsasrts sefsegcqpw lscssavsgi
      541 rsdesvfpnl kdqtkpigln rnsvvvtrrn tkadfaqled aegmklsded mllqslpqqa
      601 dtnyidtqrf psnspasamw qsgaslsntv rskrqtqaaa rgdiakmyts ngdkrniqmk
      661 endcppnssv fsqppcilpa dksrkepflp srkewehnlh ygakresikq dnrsteainq
      721 atpkrqssll nvasapsten lassqdilsc pperspcssq sspealshkd nskclgtrss
      781 vnctvtesqa kagksaevsr igvtkkisqr tlqntstlit kdyngqftts spqivssgni
      841 ythsfdgdpk asehslryfc fekgsgkirg nspcverlhk qdsllkhsss csitgsprrn
      901 slkspdplvi yytlprksas iagsitsgtp islpresrtr cdclgsetac rnnafcsnqr
      961 dvsclesnhs fltaaslnaa tsnkvypspl tkspsdsvcr stsaeltdrc khlsrresce
     1021 fsdcketgnf lqkfkttstf tvcvdedhik yhelvsiyyt lprrhsrtfc nlfrdkqeda
     1081 dlpcpkenaq sprirnkkne ghvslanvff psnlekevps ystsalvtsq nlgtaadsee
     1141 enshlppgse kicpsksvsm vhnrkdssag lplaenvlsd mvtkeisfgg pqataiatks
     1201 gkaisaasss qstevylkek keivqtatpl vstlstppkp grrlvnplcs tstnkssmqk
     1261 gnsekgcqpp klnttknlns lllhpgkkss lgrnsnteca dvllspaedr hrdgtevkqr
     1321 vnllhqntrl ynnkfsglql radssrknan nlnscskvls esqnkaavvn tasntdplqq
     1381 ldevfstdtd klknsrikke qipvitqmgt dcsglqeser hsegslnvnc kdkvlrvtqd
     1441 qkltesagde nkflsdctrd kvkdiekrkn rssiknklaa vyktsrkfss knlppkphis
     1501 nifsqndgsa tsleadlpld slismdshqp flqldnenqn hsldpnkntl rprttenkkn
     1561 enqndpsllv nntnwrsfts sytqkeaisp kkttmkvenr pslttlfpdk avttrnknsq
     1621 tfelkvesks qpvspsattl eplddekrra ssracspplp lltdknsnty insclqedic
     1681 peqnftsqaa lgqwqnmpqs aslknanlhs yqlhkshaks qrerhlsesi cardshetfa
     1741 lgsnilakdg irgkrfksys ellscdenen wasdnekchs trnlmypsve fgifgkeqql
     1801 aflqnikrsl tegrlwrpcl lnnpgafrde enpinraell ssssagskms stassprept
     1861 diyqedpaay sdsdsdtttd deyyldeidk esel
//
LOCUS       XP_053907375            1847 aa            linear   VRT 09-MAR-2023
DEFINITION  exophilin-5 isoform X3 [Cuculus canorus].
ACCESSION   XP_053907375
VERSION     XP_053907375.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051400.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1847
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1847
                     /product="exophilin-5 isoform X3"
                     /calculated_mol_wt=205500
     CDS             1..1847
                     /gene="EXPH5"
                     /coded_by="XM_054051400.1:294..5837"
                     /db_xref="GeneID:104055335"
ORIGIN      
        1 mlhkregfcg dtedankryd ssasppakae emataemcns pmsaetsgps fdanqnevme
       61 kstqewneql eeeffsilnd lddqlaqeqa kdpldrtvst gsasniqyss vfptskrqta
      121 nreqhrndws dipsmffpdg lrtirakdeh klfmrprklh sayinwhqta fqedskygdt
      181 vdgnphllsk rlssvsfgrs segslyppsv tqnsgfrhrt cmnrdtagrs ysvcslrrcp
      241 ssvssdqlsa sglqqplare snngfvprfg rqnpkripls sivwnntads pgqtqekmfk
      301 tqslmefhat dhcrnssslq etkkyacyhs khhykrsiss sncfsrvssp dkatsplpfd
      361 nwenyplyks esnlsrsycr daslgklyan qknsygkkds ycswadipqy ysdevfispe
      421 asfdvimanl ndqqwshakn skfgsqclrn dlhvyspena hmkritrsas rtssefsegc
      481 qpwlscssav sgirsdesvf pnlkdqtkpi glnrnsvvvt rrntkadfaq ledaegmkls
      541 dedmllqslp qqadtnyidt qrfpsnspas amwqsgasls ntvrskrqtq aaargdiakm
      601 ytsngdkrni qmkendcppn ssvfsqppci lpadksrkep flpsrkeweh nlhygakres
      661 ikqdnrstea inqatpkrqs sllnvasaps tenlassqdi lscpperspc ssqsspeals
      721 hkdnskclgt rssvnctvte sqakagksae vsrigvtkki sqrtlqntst litkdyngqf
      781 ttsspqivss gniythsfdg dpkasehslr yfcfekgsgk irgnspcver lhkqdsllkh
      841 ssscsitgsp rrnslkspdp lviyytlprk sasiagsits gtpislpres rtrcdclgse
      901 tacrnnafcs nqrdvscles nhsfltaasl naatsnkvyp spltkspsds vcrstsaelt
      961 drckhlsrre scefsdcket gnflqkfktt stftvcvded hikyhelvsi yytlprrhsr
     1021 tfcnlfrdkq edadlpcpke naqsprirnk kneghvslan vffpsnleke vpsystsalv
     1081 tsqnlgtaad seeenshlpp gsekicpsks vsmvhnrkds saglplaenv lsdmvtkeis
     1141 fggpqataia tksgkaisaa sssqstevyl kekkeivqta tplvstlstp pkpgrrlvnp
     1201 lcststnkss mqkgnsekgc qppklnttkn lnslllhpgk ksslgrnsnt ecadvllspa
     1261 edrhrdgtev kqrvnllhqn trlynnkfsg lqlradssrk nannlnscsk vlsesqnkaa
     1321 vvntasntdp lqqldevfst dtdklknsri kkeqipvitq mgtdcsglqe serhsegsln
     1381 vnckdkvlrv tqdqkltesa gdenkflsdc trdkvkdiek rknrssiknk laavyktsrk
     1441 fssknlppkp hisnifsqnd gsatsleadl pldslismds hqpflqldne nqnhsldpnk
     1501 ntlrprtten kknenqndps llvnntnwrs ftssytqkea ispkkttmkv enrpslttlf
     1561 pdkavttrnk nsqtfelkve sksqpvspsa ttleplddek rrassracsp plplltdkns
     1621 ntyinsclqe dicpeqnfts qaalgqwqnm pqsaslknan lhsyqlhksh aksqrerhls
     1681 esicardshe tfalgsnila kdgirgkrfk sysellscde nenwasdnek chstrnlmyp
     1741 svefgifgke qqlaflqnik rsltegrlwr pcllnnpgaf rdeenpinra ellssssags
     1801 kmsstasspr eptdiyqedp aaysdsdsdt ttddeyylde idkesel
//
LOCUS       XP_053907383            1816 aa            linear   VRT 09-MAR-2023
DEFINITION  exophilin-5 isoform X4 [Cuculus canorus].
ACCESSION   XP_053907383
VERSION     XP_053907383.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051408.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1816
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1816
                     /product="exophilin-5 isoform X4"
                     /calculated_mol_wt=202077
     CDS             1..1816
                     /gene="EXPH5"
                     /coded_by="XM_054051408.1:209..5659"
                     /db_xref="GeneID:104055335"
ORIGIN      
        1 mataemcnsp msaetsgpsf danqnevmek stqewneqle eeffsilndl ddqlaqeqak
       61 dpldrtvstg sasniqyssv fptskrqtan reqhrndwsd ipsmffpdgl rtirakdehk
      121 lfmrprklhs ayinwhqtaf qedskygdtv dgnphllskr lssvsfgrss egslyppsvt
      181 qnsgfrhrtc mnrdtagrsy svcslrrcps svssdqlsas glqqplares nngfvprfgr
      241 qnpkriplss ivwnntadsp gqtqekmfkt qslmefhatd hcrnssslqe tkkyacyhsk
      301 hhykrsisss ncfsrvsspd katsplpfdn wenyplykse snlsrsycrd aslgklyanq
      361 knsygkkdsy cswadipqyy sdevfispea sfdvimanln dqqwshakns kfgsqclrnd
      421 lhvyspenah mkritrsasr tssefsegcq pwlscssavs girsdesvfp nlkdqtkpig
      481 lnrnsvvvtr rntkadfaql edaegmklsd edmllqslpq qadtnyidtq rfpsnspasa
      541 mwqsgaslsn tvrskrqtqa aargdiakmy tsngdkrniq mkendcppns svfsqppcil
      601 padksrkepf lpsrkewehn lhygakresi kqdnrsteai nqatpkrqss llnvasapst
      661 enlassqdil scpperspcs sqsspealsh kdnskclgtr ssvnctvtes qakagksaev
      721 srigvtkkis qrtlqntstl itkdyngqft tsspqivssg niythsfdgd pkasehslry
      781 fcfekgsgki rgnspcverl hkqdsllkhs sscsitgspr rnslkspdpl viyytlprks
      841 asiagsitsg tpislpresr trcdclgset acrnnafcsn qrdvsclesn hsfltaasln
      901 aatsnkvyps pltkspsdsv crstsaeltd rckhlsrres cefsdcketg nflqkfktts
      961 tftvcvdedh ikyhelvsiy ytlprrhsrt fcnlfrdkqe dadlpcpken aqsprirnkk
     1021 neghvslanv ffpsnlekev psystsalvt sqnlgtaads eeenshlppg sekicpsksv
     1081 smvhnrkdss aglplaenvl sdmvtkeisf ggpqataiat ksgkaisaas ssqstevylk
     1141 ekkeivqtat plvstlstpp kpgrrlvnpl cststnkssm qkgnsekgcq ppklnttknl
     1201 nslllhpgkk sslgrnsnte cadvllspae drhrdgtevk qrvnllhqnt rlynnkfsgl
     1261 qlradssrkn annlnscskv lsesqnkaav vntasntdpl qqldevfstd tdklknsrik
     1321 keqipvitqm gtdcsglqes erhsegslnv nckdkvlrvt qdqkltesag denkflsdct
     1381 rdkvkdiekr knrssiknkl aavyktsrkf ssknlppkph isnifsqndg satsleadlp
     1441 ldslismdsh qpflqldnen qnhsldpnkn tlrprttenk knenqndpsl lvnntnwrsf
     1501 tssytqkeai spkkttmkve nrpslttlfp dkavttrnkn sqtfelkves ksqpvspsat
     1561 tleplddekr rassracspp lplltdknsn tyinsclqed icpeqnftsq aalgqwqnmp
     1621 qsaslknanl hsyqlhksha ksqrerhlse sicardshet falgsnilak dgirgkrfks
     1681 ysellscden enwasdnekc hstrnlmyps vefgifgkeq qlaflqnikr sltegrlwrp
     1741 cllnnpgafr deenpinrae llssssagsk msstasspre ptdiyqedpa aysdsdsdtt
     1801 tddeyyldei dkesel
//
LOCUS       XP_053907403             811 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase SH3RF3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053907403
VERSION     XP_053907403.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051428.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..811
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..811
                     /product="E3 ubiquitin-protein ligase SH3RF3 isoform X1"
                     /calculated_mol_wt=85755
     Region          8..53
                     /region_name="RING-HC_SH3RF3"
                     /note="RING finger, HC subclass, found in SH3
                     domain-containing RING finger protein 3 (SH3RF3) and
                     similar proteins; cd16750"
                     /db_xref="CDD:438408"
     Region          128..181
                     /region_name="SH3_SH3RF3_1"
                     /note="First Src Homology 3 domain of SH3 domain
                     containing ring finger 3, an E3 ubiquitin-protein ligase;
                     cd11928"
                     /db_xref="CDD:212861"
     Site            order(134,136,139,143,161..162,175,177..178)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212861"
     Region          191..245
                     /region_name="SH3_SH3RF3_2"
                     /note="Second Src Homology 3 domain of SH3 domain
                     containing ring finger 3, an E3 ubiquitin-protein ligase;
                     cd11931"
                     /db_xref="CDD:212864"
     Site            order(196,198,201,209,227..228,241,243..244)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212864"
     Region          400..456
                     /region_name="SH3_SH3RF3_3"
                     /note="Third Src Homology 3 domain of SH3 domain
                     containing ring finger 3, an E3 ubiquitin-protein ligase;
                     cd11925"
                     /db_xref="CDD:212858"
     Site            order(406,408,411,415,433..434,449,451..452)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212858"
     Region          <463..>633
                     /region_name="PRK12323"
                     /note="DNA polymerase III subunit gamma/tau; cl46901"
                     /db_xref="CDD:481241"
     Region          756..810
                     /region_name="SH3_SH3RF_C"
                     /note="C-terminal (Fourth) Src Homology 3 domain of SH3
                     domain containing ring finger 1 (SH3RF1), SH3RF3, and
                     similar domains; cd11785"
                     /db_xref="CDD:212719"
     Site            order(761,763,766,770,788..789,804,806..807)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212719"
     CDS             1..811
                     /gene="SH3RF3"
                     /coded_by="XM_054051428.1:65..2500"
                     /db_xref="GeneID:104056676"
ORIGIN      
        1 mdesslldll ecsvclerld ttakvlpcqh tfcrrclesi vssrhelrcp ecrilvgcgv
       61 delpanillv rlldgirqrp raaggasgsa gapaypqpaa apsaaaslre laaasrsall
      121 aksvsqlpyg kalytyegke pgdlkfnkgd iiilrrkvde nwyhgelngn hgffpasyiq
      181 cikplpqapp qgkalydfei kdkdqdkdcl tftkdeiltv irrvddnwae gmlgdkigif
      241 pilyvelnes akqliemdkt csaaasgcdv plltetaava aatglapcst lagtgaagaa
      301 qrqaegkknt kkrhsftals mthkssqaas nrhsmeisap vlisssdpra aarigelthl
      361 sssapaqdss stgtatvtgp rtsaiigdqg tppkvqlpln iylalyaykp qkndelelrk
      421 gemyrviekc qdgwfkgtsl rsgmsgvfpg nyvtpvsrvp vgagqprngg aggapstkga
      481 pgtihpigag htnattavrp vvpitvpqth pqlqaaspql nnclkysaqq pasqarnamq
      541 mahtpapape rptatvsplr tpsspsrlpa aairphpais pqhshqppmp gtrpliplts
      601 aaaaitppnv saahlngeag ggplggsvsp gpaskaeerk nekkekksgl lkllagastk
      661 kksrsppsvs pthdpqaaie gvlqgavgpe lsslsshgra gscpiesemq gamgleplhr
      721 ktgsldlnfs ipsparqpls smaairpepk plpreryrvv vpyppqseae ielkegdivf
      781 vhkkwedgwy kgtlqrngrt glfpgsfves f
//
LOCUS       XP_053907414             694 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase SH3RF3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053907414
VERSION     XP_053907414.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051439.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..694
                     /product="E3 ubiquitin-protein ligase SH3RF3 isoform X2"
                     /calculated_mol_wt=73506
     Region          11..64
                     /region_name="SH3_SH3RF3_1"
                     /note="First Src Homology 3 domain of SH3 domain
                     containing ring finger 3, an E3 ubiquitin-protein ligase;
                     cd11928"
                     /db_xref="CDD:212861"
     Site            order(17,19,22,26,44..45,58,60..61)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212861"
     Region          74..128
                     /region_name="SH3_SH3RF3_2"
                     /note="Second Src Homology 3 domain of SH3 domain
                     containing ring finger 3, an E3 ubiquitin-protein ligase;
                     cd11931"
                     /db_xref="CDD:212864"
     Site            order(79,81,84,92,110..111,124,126..127)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212864"
     Region          283..339
                     /region_name="SH3_SH3RF3_3"
                     /note="Third Src Homology 3 domain of SH3 domain
                     containing ring finger 3, an E3 ubiquitin-protein ligase;
                     cd11925"
                     /db_xref="CDD:212858"
     Site            order(289,291,294,298,316..317,332,334..335)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212858"
     Region          <346..>516
                     /region_name="PRK12323"
                     /note="DNA polymerase III subunit gamma/tau; cl46901"
                     /db_xref="CDD:481241"
     Region          639..693
                     /region_name="SH3_SH3RF_C"
                     /note="C-terminal (Fourth) Src Homology 3 domain of SH3
                     domain containing ring finger 1 (SH3RF1), SH3RF3, and
                     similar domains; cd11785"
                     /db_xref="CDD:212719"
     Site            order(644,646,649,653,671..672,687,689..690)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212719"
     CDS             1..694
                     /gene="SH3RF3"
                     /coded_by="XM_054051439.1:31..2115"
                     /db_xref="GeneID:104056676"
ORIGIN      
        1 mqdvqsvsql pygkalytye gkepgdlkfn kgdiiilrrk vdenwyhgel ngnhgffpas
       61 yiqcikplpq appqgkalyd feikdkdqdk dcltftkdei ltvirrvddn waegmlgdki
      121 gifpilyvel nesakqliem dktcsaaasg cdvpllteta avaaatglap cstlagtgaa
      181 gaaqrqaegk kntkkrhsft alsmthkssq aasnrhsmei sapvlisssd praaarigel
      241 thlsssapaq dssstgtatv tgprtsaiig dqgtppkvql plniylalya ykpqkndele
      301 lrkgemyrvi ekcqdgwfkg tslrsgmsgv fpgnyvtpvs rvpvgagqpr nggaggapst
      361 kgapgtihpi gaghtnatta vrpvvpitvp qthpqlqaas pqlnnclkys aqqpasqarn
      421 amqmahtpap aperptatvs plrtpsspsr lpaaairphp aispqhshqp pmpgtrplip
      481 ltsaaaaitp pnvsaahlng eagggplggs vspgpaskae erknekkekk sgllkllaga
      541 stkkksrspp svspthdpqa aiegvlqgav gpelsslssh gragscpies emqgamglep
      601 lhrktgsldl nfsipsparq plssmaairp epkplprery rvvvpyppqs eaeielkegd
      661 ivfvhkkwed gwykgtlqrn grtglfpgsf vesf
//
LOCUS       XP_053907427             368 aa            linear   VRT 09-MAR-2023
DEFINITION  choline-phosphate cytidylyltransferase B isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053907427
VERSION     XP_053907427.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051452.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..368
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..368
                     /product="choline-phosphate cytidylyltransferase B isoform
                     X1"
                     /calculated_mol_wt=41850
     Region          73..326
                     /region_name="PLN02413"
                     /note="choline-phosphate cytidylyltransferase"
                     /db_xref="CDD:215229"
     CDS             1..368
                     /gene="PCYT1B"
                     /coded_by="XM_054051452.1:48..1154"
                     /db_xref="GeneID:104059424"
ORIGIN      
        1 mpvlargaes etgipdppra rerrseamee lehtcpqprl tltapapfad erscqcqaph
       61 ekltiaqarl gtpadrpvrv yadgifdlfh sgharalmqa ktlfpnsyll vgvcsddlth
      121 kfkgftvmne teryealrhc ryvdevirda pwtltpefle khkidfvahd dipyssagsd
      181 dvykhikeag mfvptqrteg istsdiitri vrdydvyarr nlqrgytake lnvsfinekk
      241 yrfqnqvdkm kekvknveek skefvykvee kshdliqkwe eksrefignf lelfgpdgaw
      301 kqmfqersgr mlqafsprqs pnssptrgrs psrspsppwv fnkasppssp kaasaslssm
      361 segdedek
//
LOCUS       XP_053907436             350 aa            linear   VRT 09-MAR-2023
DEFINITION  choline-phosphate cytidylyltransferase B isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053907436
VERSION     XP_053907436.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051461.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..350
                     /product="choline-phosphate cytidylyltransferase B isoform
                     X2"
                     /calculated_mol_wt=39972
     Region          55..308
                     /region_name="PLN02413"
                     /note="choline-phosphate cytidylyltransferase"
                     /db_xref="CDD:215229"
     CDS             1..350
                     /gene="PCYT1B"
                     /coded_by="XM_054051461.1:93..1145"
                     /db_xref="GeneID:104059424"
ORIGIN      
        1 mvgsqkrske eeaqeapryq rktltapapf aderscqcqa phekltiaqa rlgtpadrpv
       61 rvyadgifdl fhsgharalm qaktlfpnsy llvgvcsddl thkfkgftvm neteryealr
      121 hcryvdevir dapwtltpef lekhkidfva hddipyssag sddvykhike agmfvptqrt
      181 egistsdiit rivrdydvya rrnlqrgyta kelnvsfine kkyrfqnqvd kmkekvknve
      241 ekskefvykv eekshdliqk weeksrefig nflelfgpdg awkqmfqers grmlqafspr
      301 qspnssptrg rspsrspspp wvfnkaspps spkaasasls smsegdedek
//
LOCUS       XP_053907444             346 aa            linear   VRT 09-MAR-2023
DEFINITION  choline-phosphate cytidylyltransferase B isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053907444
VERSION     XP_053907444.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051469.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..346
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..346
                     /product="choline-phosphate cytidylyltransferase B isoform
                     X3"
                     /calculated_mol_wt=39414
     Region          73..294
                     /region_name="PLN02413"
                     /note="choline-phosphate cytidylyltransferase"
                     /db_xref="CDD:215229"
     CDS             1..346
                     /gene="PCYT1B"
                     /coded_by="XM_054051469.1:48..1088"
                     /db_xref="GeneID:104059424"
ORIGIN      
        1 mpvlargaes etgipdppra rerrseamee lehtcpqprl tltapapfad erscqcqaph
       61 ekltiaqarl gtpadrpvrv yadgifdlfh sgharalmqa ktlfpnsyll vgvcsddlth
      121 kfkgftvmne teryealrhc ryvdevirda pwtltpefle khkidfvahd dipyssagsd
      181 dvykhikeag mfvptqrteg istsdiitri vrdydvyarr nlqrgytake lnvsfinekk
      241 yrfqnqvdkm kekvknveek skefvykvee kshdliqkwe eksrefignf lelfgpdgaw
      301 psiasnptls tpdeveiscp lsprgaarhs hmafctqslq qphstr
//
LOCUS       XP_009560739             166 aa            linear   VRT 09-MAR-2023
DEFINITION  microfibrillar-associated protein 5 [Cuculus canorus].
ACCESSION   XP_009560739
VERSION     XP_009560739.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009562444.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..166
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..166
                     /product="microfibrillar-associated protein 5"
                     /calculated_mol_wt=18398
     Region          5..132
                     /region_name="MAGP"
                     /note="Microfibril-associated glycoprotein (MAGP);
                     pfam05507"
                     /db_xref="CDD:461667"
     CDS             1..166
                     /gene="MFAP5"
                     /coded_by="XM_009562444.2:124..624"
                     /db_xref="GeneID:104060633"
ORIGIN      
        1 mktsgacvlf cllavflspa dwfpgmvngq elesatgevg tdslistsaa avtppvllsp
       61 vqsdsettta ssdcreekfp ctrlysvhkp vkqcisylcv tsvrrmyiin kevctrvvck
      121 enevmqdeic rqlaglpsrr lrrserplhl pcrqllehqr krpdal
//
LOCUS       XP_009563243             452 aa            linear   VRT 09-MAR-2023
DEFINITION  MANSC domain-containing protein 1 [Cuculus canorus].
ACCESSION   XP_009563243
VERSION     XP_009563243.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009564948.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009563243.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..452
                     /product="MANSC domain-containing protein 1"
                     /calculated_mol_wt=48350
     Region          27..115
                     /region_name="MANEC"
                     /note="MANEC domain; pfam07502"
                     /db_xref="CDD:462186"
     Region          <217..451
                     /region_name="DUF5585"
                     /note="Family of unknown function (DUF5585); pfam17823"
                     /db_xref="CDD:465521"
     CDS             1..452
                     /gene="MANSC1"
                     /coded_by="XM_009564948.2:249..1607"
                     /db_xref="GeneID:104062826"
ORIGIN      
        1 mapgrspwpl clllatgvmp tpppsgecsa ekmgdaivdi nlslpqgirg aepmfapspe
       61 acvraccsge kppgdkkcnl mifdsrrtsa hpncylfycp steacpmkps tgyvsykitr
      121 dthaleditf ksenfsshey slpsddgafi shsqetqqnr taalqqsvfh qasellnhma
      181 rhldnneahn vfpesqraeh petldsiprq kvinlwsnts stvqigntsa sfltpqssvp
      241 epngtilspl ptsttrlesr ttsvpagsvr ptavatatat flptantrak lgippatitv
      301 thvplssptt saststtkqv tansrsattp sglrgpaill eptvvssndt shvtllsfpg
      361 vtlsasdsst apqndsqgye qsdlesylpe nvprgkgvih lgeknslvva llfgviflll
      421 vialtgkkih eslqkrhytr ldylingiya dv
//
LOCUS       XP_053907480             421 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein KIAA0930 homolog isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053907480
VERSION     XP_053907480.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051505.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..421
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..421
                     /product="uncharacterized protein KIAA0930 homolog isoform
                     X1"
                     /calculated_mol_wt=47742
     Region          53..275
                     /region_name="DUF2045"
                     /note="Uncharacterized conserved protein (DUF2045);
                     pfam09741"
                     /db_xref="CDD:462872"
     CDS             1..421
                     /gene="KIAA0930"
                     /coded_by="XM_054051505.1:172..1437"
                     /db_xref="GeneID:104062818"
ORIGIN      
        1 masagsraaa rsegaeldrs lqqmlraiae ersraglrqe isglgcfkdd rivfwtwmfs
       61 tyfmekwapr qddmlfyvrr klsyvsgdst egkkqievev yrrdskklpg lgdpdidwee
      121 svylnlilqk ldyvvtcavc trsdggdihi hkkksqqvfa spskhpmdsk geeskisypn
      181 iffmidsfee vfsdmtvgeg emvcvelvas dksntfqgvi fqgsiryeal kkvydnrvsv
      241 aakmaqrmsf gfykynnmef vrmkgpqgkg haemavsrvs tgdtspygte edsnpdspvh
      301 ervtsfstpp tpernnrpsf fspslkrkvp rnriaemkks hsandseeff rdddggdlhn
      361 atnlrsrsls gtgrslvgsw lklnrtdenf llyahltyvt lplhriltdi levrqkpilm
      421 t
//
LOCUS       XP_053907489             420 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein KIAA0930 homolog isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053907489
VERSION     XP_053907489.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051514.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..420
                     /product="uncharacterized protein KIAA0930 homolog isoform
                     X2"
                     /calculated_mol_wt=47614
     Region          53..274
                     /region_name="DUF2045"
                     /note="Uncharacterized conserved protein (DUF2045);
                     pfam09741"
                     /db_xref="CDD:462872"
     CDS             1..420
                     /gene="KIAA0930"
                     /coded_by="XM_054051514.1:172..1434"
                     /db_xref="GeneID:104062818"
ORIGIN      
        1 masagsraaa rsegaeldrs lqqmlraiae ersraglrqe isglgcfkdd rivfwtwmfs
       61 tyfmekwapr qddmlfyvrr klsyvsgdst egkkievevy rrdskklpgl gdpdidwees
      121 vylnlilqkl dyvvtcavct rsdggdihih kkksqqvfas pskhpmdskg eeskisypni
      181 ffmidsfeev fsdmtvgege mvcvelvasd ksntfqgvif qgsiryealk kvydnrvsva
      241 akmaqrmsfg fykynnmefv rmkgpqgkgh aemavsrvst gdtspygtee dsnpdspvhe
      301 rvtsfstppt pernnrpsff spslkrkvpr nriaemkksh sandseeffr dddggdlhna
      361 tnlrsrslsg tgrslvgswl klnrtdenfl lyahltyvtl plhriltdil evrqkpilmt
//
LOCUS       XP_009568149             259 aa            linear   VRT 09-MAR-2023
DEFINITION  sarcospan [Cuculus canorus].
ACCESSION   XP_009568149
VERSION     XP_009568149.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009569854.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009568149.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..259
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..259
                     /product="sarcospan"
                     /calculated_mol_wt=28617
     Region          80..226
                     /region_name="CD20"
                     /note="CD20-like family; pfam04103"
                     /db_xref="CDD:461174"
     CDS             1..259
                     /gene="SSPN"
                     /coded_by="XM_009569854.2:168..947"
                     /db_xref="GeneID:104067140"
ORIGIN      
        1 mgkkekkpqh srspnnqsqt gkapeeekst dsskmkesam kkkkqkktkg dpktgqeees
       61 htccgcrfpl lfallqlalg isvtvlgflm agisssllvr dtpywagiiv cvaslvgfvm
      121 lcisyqpdek tcvqftvkll yfllsalglv acvlavafaa hrylqmtkft cdtilescqc
      181 kldtadplgr tftyqnasdc gsltsilnly mllqmvlnli aalvclsacf vmwkhryqvf
      241 yvgvrfypln ategqqqqv
//
LOCUS       XP_053907507             535 aa            linear   VRT 09-MAR-2023
DEFINITION  T-complex protein 1 subunit beta [Cuculus canorus].
ACCESSION   XP_053907507
VERSION     XP_053907507.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051532.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..535
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..535
                     /product="T-complex protein 1 subunit beta"
                     /calculated_mol_wt=57228
     Region          11..527
                     /region_name="TCP1_beta"
                     /note="TCP-1 (CTT or eukaryotic type II) chaperonin
                     family, beta subunit. Chaperonins are involved in
                     productive folding of proteins. They share a common
                     general morphology, a double toroid of 2 stacked rings. In
                     contrast to bacterial group I chaperonins (GroEL)...;
                     cd03336"
                     /db_xref="CDD:239452"
     Site            order(16,20,48..51,53,73,75,79,83,86,380,516..522)
                     /site_type="other"
                     /note="ring oligomerisation interface [polypeptide
                     binding]"
                     /db_xref="CDD:239452"
     Site            order(43..45,97,101,165,392,410,450,493,495)
                     /site_type="other"
                     /note="ATP/Mg binding site [chemical binding]"
                     /db_xref="CDD:239452"
     Site            order(430,448,457,459..460,463)
                     /site_type="active"
                     /note="stacking interactions [active]"
                     /db_xref="CDD:239452"
     CDS             1..535
                     /gene="CCT2"
                     /coded_by="XM_054051532.1:119..1726"
                     /db_xref="GeneID:104063855"
ORIGIN      
        1 masislapvn ifkagadeek aetarlssfv gaiaigdlvk stlgpkgmdk illstgrdst
       61 vtvtndgati lkavgvdnpa akvlvdmskv qddevgdgtt svtvlaaell reaelliakk
      121 ihpqtiiagw raatnaarea llnaavdhgd devkfhedlm niagttlssk llthhkdhfv
      181 rlaveavlrl kgsgnleaih vikklggsla dsyldegfll dkkigvnqpk rienakilia
      241 ntgmdtdkik ifgsrvrvds takvaeieqa ekekmkekve rilkhgincf inrqliynyp
      301 eqlfgaagvm aiehadfagv erlalvtgge iastfdhpel vklgscklie evmigedkli
      361 hfsgvamgea ctivlrgatq qildeaersl hdalcvlaqt vkdtrtvygg gcsemlmana
      421 vaelavrtpg kesvamesfa kalrmiptii adnagydsad lvaqlraahs egkttygldm
      481 negtigdmaa lgvtesfqvk rhvllsaaea aemilrvddi ikaaprkrvp dhrpc
//
LOCUS       XP_053907517             278 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich repeat-containing protein 10 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053907517
VERSION     XP_053907517.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051542.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..278
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..278
                     /product="leucine-rich repeat-containing protein 10
                     isoform X1"
                     /calculated_mol_wt=31478
     Region          <20..>223
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          32..53
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          54..76
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          77..99
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          100..122
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          123..145
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          146..168
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          169..191
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          192..213
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     CDS             1..278
                     /gene="LRRC10"
                     /coded_by="XM_054051542.1:125..961"
                     /db_xref="GeneID:104063844"
ORIGIN      
        1 mgnslkaiva fvpsdecqky lledleempv dkmvdlsssq lrrlplhics frelvklyls
       61 dnnlnhlppe leqlqnlqil aldfnnfkal plvvctlkql cilylgnnkl cslplelrfl
      121 qnlktlwies nclqclpevv celsllktlh agsnalrtlp tqlrrlqelr tiwlsgnlls
      181 efptvlldmp flevidvdrn sirffpslah lpglklviyd hnpcrnapkv akgvrrvgrw
      241 seespeprkr sgavieitld erptsapvik pepeaepc
//
LOCUS       XP_053907524             241 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich repeat-containing protein 10 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053907524
VERSION     XP_053907524.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051549.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..241
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..241
                     /product="leucine-rich repeat-containing protein 10
                     isoform X2"
                     /calculated_mol_wt=27421
     Region          <4..>186
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          17..39
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          40..62
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          63..85
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          86..108
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          109..131
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          132..154
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          155..176
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     CDS             1..241
                     /gene="LRRC10"
                     /coded_by="XM_054051549.1:932..1657"
                     /db_xref="GeneID:104063844"
ORIGIN      
        1 mdcrlfeesn llklwelvkl ylsdnnlnhl ppeleqlqnl qilaldfnnf kalplvvctl
       61 kqlcilylgn nklcslplel rflqnlktlw iesnclqclp evvcelsllk tlhagsnalr
      121 tlptqlrrlq elrtiwlsgn llsefptvll dmpflevidv drnsirffps lahlpglklv
      181 iydhnpcrna pkvakgvrrv grwseespep rkrsgaviei tlderptsap vikpepeaep
      241 c
//
LOCUS       XP_009559212             789 aa            linear   VRT 09-MAR-2023
DEFINITION  receptor-interacting serine/threonine-protein kinase 4 isoform X1
            [Cuculus canorus].
ACCESSION   XP_009559212
VERSION     XP_009559212.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560917.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009559212.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..789
                     /product="receptor-interacting serine/threonine-protein
                     kinase 4 isoform X1"
                     /calculated_mol_wt=87182
     Region          27..293
                     /region_name="STKc_RIP4_like"
                     /note="Catalytic domain of the Serine/Threonine kinases,
                     Receptor Interacting Protein 4 and similar proteins;
                     cd14025"
                     /db_xref="CDD:270927"
     Site            order(30..34,38,51,53,84,98..101,105,107,145,147,149..150,
                     152,163,166,185..188)
                     /site_type="active"
                     /db_xref="CDD:270927"
     Site            order(30..34,38,51,53,84,98..101,105,145,147,149..150,152,
                     163)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270927"
     Site            order(34,105,107,145,147,149,166,185..188)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270927"
     Site            162..188
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270927"
     Region          411..502
                     /region_name="Ank_2"
                     /note="Ankyrin repeats (3 copies); pfam12796"
                     /db_xref="CDD:463710"
     Region          441..469
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          458..723
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          471..502
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          504..535
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(537,539,543..544,547..549,551..552,556,559,568,570,
                     572,576..577,580..582,584..585,589,593,602,604,606,
                     610..611,614..616,618..619,623,626,635)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          537..568
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          570..602
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          604..635
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          637..666
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          670..700
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          704..756
                     /region_name="Ank_4"
                     /note="Ankyrin repeats (many copies); pfam13637"
                     /db_xref="CDD:372654"
     Region          735..759
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..789
                     /gene="RIPK4"
                     /coded_by="XM_009560917.2:50..2419"
                     /db_xref="GeneID:104059269"
ORIGIN      
        1 msaareggsp wamgllktfe esefssweki gsggfgqvyk vrhlhwktwl aikcspslhv
       61 dekermelle earkmemakf ryilpvygic kepvglvmey metgslekll aseplpwelr
      121 friihetavg mnflhcmspp llhldlkpan illdahyhvk isdfglakcn glshshdism
      181 dglcgtiayl pperikeknr cfdtkhdvys faivvwgvlt qkkpfaeenn ilhimvkvvk
      241 ghrpelpavs ksrphscnnl iklmqkcwqd dpgerptfqe itsetealce kpedetkemi
      301 trdldtknss eqqsegmsal ytpkqepalp svkdyslsel lsqldsgisq tmegpedlsr
      361 sssesklaas dkrlsgvssv dsafssrgsl slsferessd igttdiqkrk lteailsgdt
      421 sklmkilqpq dvdivldgns sllhlaveag qeecvkwlll ynanpnltnk kgstplhiai
      481 ekkfksivel imarkinvna kdedqwtalh faaqngddfs tkmlldknas lnevdfegra
      541 pihiacqygq etivrillrr gvnvnikgkd dwvplhyaaw qghlpivkll akqrganvnv
      601 qtvdgrtslh laaqrghyrv arllidlesd vniqnallqt alhiaaetgh tstsrlllkh
      661 gadieaatae gytalhlssr sghlattkll idegasvvar gplnrtplhl aaenghsevv
      721 eelvssenvk vsdsegltal hlaaqgghtk tvevllkhgv ytdmqrstcq allqlapssn
      781 ssatvlset
//
LOCUS       XP_053907544             736 aa            linear   VRT 09-MAR-2023
DEFINITION  receptor-interacting serine/threonine-protein kinase 4 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053907544
VERSION     XP_053907544.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051569.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..736
                     /product="receptor-interacting serine/threonine-protein
                     kinase 4 isoform X2"
                     /calculated_mol_wt=81338
     Region          11..240
                     /region_name="STKc_RIP4_like"
                     /note="Catalytic domain of the Serine/Threonine kinases,
                     Receptor Interacting Protein 4 and similar proteins;
                     cd14025"
                     /db_xref="CDD:270927"
     Site            order(52,54,92,94,96,113,132..135)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270927"
     Site            109..135
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270927"
     Region          358..449
                     /region_name="Ank_2"
                     /note="Ankyrin repeats (3 copies); pfam12796"
                     /db_xref="CDD:463710"
     Region          388..416
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          405..670
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          418..449
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          451..482
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(484,486,490..491,494..496,498..499,503,506,515,517,
                     519,523..524,527..529,531..532,536,540,549,551,553,
                     557..558,561..563,565..566,570,573,582)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          484..515
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          517..549
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          551..582
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          584..613
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          617..647
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          651..703
                     /region_name="Ank_4"
                     /note="Ankyrin repeats (many copies); pfam13637"
                     /db_xref="CDD:372654"
     Region          682..706
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..736
                     /gene="RIPK4"
                     /coded_by="XM_054051569.1:119..2329"
                     /db_xref="GeneID:104059269"
ORIGIN      
        1 meawteekgw ermelleear kmemakfryi lpvygickep vglvmeymet gslekllase
       61 plpwelrfri ihetavgmnf lhcmsppllh ldlkpanill dahyhvkisd fglakcngls
      121 hshdismdgl cgtiaylppe rikeknrcfd tkhdvysfai vvwgvltqkk pfaeennilh
      181 imvkvvkghr pelpavsksr phscnnlikl mqkcwqddpg erptfqeits etealcekpe
      241 detkemitrd ldtknsseqq segmsalytp kqepalpsvk dyslsellsq ldsgisqtme
      301 gpedlsrsss esklaasdkr lsgvssvdsa fssrgslsls feressdigt tdiqkrklte
      361 ailsgdtskl mkilqpqdvd ivldgnssll hlaveagqee cvkwlllyna npnltnkkgs
      421 tplhiaiekk fksivelima rkinvnakde dqwtalhfaa qngddfstkm lldknaslne
      481 vdfegrapih iacqygqeti vrillrrgvn vnikgkddwv plhyaawqgh lpivkllakq
      541 rganvnvqtv dgrtslhlaa qrghyrvarl lidlesdvni qnallqtalh iaaetghtst
      601 srlllkhgad ieaataegyt alhlssrsgh lattkllide gasvvargpl nrtplhlaae
      661 nghsevveel vssenvkvsd segltalhla aqgghtktve vllkhgvytd mqrstcqall
      721 qlapssnssa tvlset
//
LOCUS       XP_053907593            1048 aa            linear   VRT 09-MAR-2023
DEFINITION  mastermind-like protein 2 [Cuculus canorus].
ACCESSION   XP_053907593
VERSION     XP_053907593.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051618.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1048
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1048
                     /product="mastermind-like protein 2"
                     /calculated_mol_wt=113863
     Region          30..85
                     /region_name="MamL-1"
                     /note="MamL-1 domain; pfam09596"
                     /db_xref="CDD:462834"
     CDS             1..1048
                     /gene="MAML2"
                     /coded_by="XM_054051618.1:1705..4851"
                     /db_xref="GeneID:104064179"
ORIGIN      
        1 mgdtappqaa glgagllggg gagpaaprvh saiverlrar iavcrqhhls cegryergra
       61 essdrerest lqllhlvqqg qgarkankhp kassaashaa appdyhqhll snggsnngeq
      121 pageqrasal lalqgslkrk lvvnlspvnn krpngvsess fldikrvrvg dnisvgqggq
      181 hvnncqsqsm sgtmsvgqgs qrkasslann thasgngmfn mtlkevkkep getmscskhl
      241 dgqtshenvf pnrygedswe qmmdlelqel fnelnnisvp pmsdlelenm inatikqdep
      301 fnidlgqqsq rgptrslqmd kmvikseyap gmnqapvgsp qmrpsstgpa ftmapaamst
      361 sspipsvpqn qtqvsqvssa ssrplpnwqe vshaqqlkqi aanrqqhali qqqqqqqnqt
      421 tnwstlspsg pspgpfvqek ipspsfrqqq fspqssamlg vpvngnqskg mnnyvykptt
      481 pqsnpmdiim qqkpqdlnrn finsaqpple qhhgntkplf hfnseqtnqq mpsvlgsqnk
      541 pallhytqqa qgsapvqqpq qqqqqqpqpp paqplpsqsl qrppnvplam qqkmmlqkmq
      601 qsqqisglqy pvsqqhrqdq hsvvgqavgp tpsssscsnp ntgsgymnss qqsmlnqqlm
      661 ekkqalqrqm meqkqlllqq qmlaeaekit pqdqlnrhlt rpppdykdqr rnmvnmqqan
      721 qypggspavs msanvslsnp isthsimsqs sslmstsagt rmpsvpaprs mgcygnlpcn
      781 qqnaynvssg mnqmqqhrnq nqvlpsqnnp vmsrqqtmtq gnnvaafgtg svvnsqqvrp
      841 slnhgatgip vqrpanviit ttataqnwap qeaavkqqda lkpagvrfpt gtpypnqslq
      901 rnvgnqhfpq ralapnqlts gvqmrpplnq mhqtlnaqsa gslrglsirp nqlrgqtvpt
      961 lnqpgtsmtp psslpstsft stnqnsrayq gsdhgndlaf dflnqqgdsi gpalnsdsdf
     1021 idsllktepg nddwmkdinl deilgnhs
//
LOCUS       XP_053907607             831 aa            linear   VRT 09-MAR-2023
DEFINITION  prickle-like protein 1 [Cuculus canorus].
ACCESSION   XP_053907607
VERSION     XP_053907607.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051632.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..831
                     /product="prickle-like protein 1"
                     /calculated_mol_wt=94469
     Region          22..118
                     /region_name="PET_Prickle"
                     /note="The PET domain of Prickle; cd09827"
                     /db_xref="CDD:193602"
     Region          126..184
                     /region_name="LIM1_Prickle_1"
                     /note="The first LIM domain of Prickle 1; cd09483"
                     /db_xref="CDD:188867"
     Site            order(126,129,152,155,158,161,179,182)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188867"
     Region          189..244
                     /region_name="LIM2_Prickle"
                     /note="The second LIM domain of Prickle; cd09418"
                     /db_xref="CDD:188802"
     Site            order(191,194,212,215,218,221,239,242)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188802"
     Region          249..307
                     /region_name="LIM3_Prickle"
                     /note="The third LIM domain of Prickle; cd09420"
                     /db_xref="CDD:188804"
     Site            order(251,254,273,278,281,284,302,306)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188804"
     CDS             1..831
                     /gene="PRICKLE1"
                     /coded_by="XM_054051632.1:200..2695"
                     /db_xref="GeneID:104062404"
ORIGIN      
        1 mplemepkan nlvfgcqrss tsdddsgcal eeyawvppgl rpeqvqlyfa clpeekvpyv
       61 nspgekhrik qllyqlpphd nevrycqsls eeekkelqmf ssqrkkealg rgtikllsra
      121 vmhavceqcg tkvnggevav fasragpgvc whpscfvcft cnellvdliy fyqdgkihcg
      181 rhhaellkpr csacdeiifa decteaegrh whmkhfccle cetilggqry imkdgrpfcc
      241 ncfeslyaey cetcgehigv dhaqmtydgq hwhatetcfs caqcktsllg cpflpkqgqi
      301 ycsktcslge dvhasdssds afqsarsrds rrsirmgkss rsadqcrqsl llspalnykf
      361 sglsdnaddt lsrklddlsl sreeanfvne dfwkgrveqe mpedpeewae hedymtqlll
      421 kfgdkslfqq paevdirsse hwisdsmvks kldlkknnps laskkyqsdm ywaqsqdglg
      481 dsaygshpgp assrkiqeld mehgasgykh dqtpwyggsl eclsdlkqqe qsvrdsmdsl
      541 alsnitgasm dgegkprpsl yslqtfqele iedcekmsnm gtlnssmlhr steslkslss
      601 elcqakvspe ekpvhmpvlr rsksqsrpqq vkfsddvidn gsyenveirq ppmsertrrr
      661 vyhfeergnr pshhrrrsrk srsdnalnla aerrcsprer fryyspqdhe kfiqnrssrd
      721 irsyiqnael ygqyahtrsd yalrnqvvdk ffglygeedd swcstsssss dseeegyflg
      781 qpipqprslr ypyytddlsg pttalsssqf gqrttkskkk rghkgkncii s
//
LOCUS       XP_053907617             831 aa            linear   VRT 09-MAR-2023
DEFINITION  prickle-like protein 1 [Cuculus canorus].
ACCESSION   XP_053907617
VERSION     XP_053907617.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051642.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..831
                     /product="prickle-like protein 1"
                     /calculated_mol_wt=94469
     Region          22..118
                     /region_name="PET_Prickle"
                     /note="The PET domain of Prickle; cd09827"
                     /db_xref="CDD:193602"
     Region          126..184
                     /region_name="LIM1_Prickle_1"
                     /note="The first LIM domain of Prickle 1; cd09483"
                     /db_xref="CDD:188867"
     Site            order(126,129,152,155,158,161,179,182)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188867"
     Region          189..244
                     /region_name="LIM2_Prickle"
                     /note="The second LIM domain of Prickle; cd09418"
                     /db_xref="CDD:188802"
     Site            order(191,194,212,215,218,221,239,242)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188802"
     Region          249..307
                     /region_name="LIM3_Prickle"
                     /note="The third LIM domain of Prickle; cd09420"
                     /db_xref="CDD:188804"
     Site            order(251,254,273,278,281,284,302,306)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188804"
     CDS             1..831
                     /gene="PRICKLE1"
                     /coded_by="XM_054051642.1:266..2761"
                     /db_xref="GeneID:104062404"
ORIGIN      
        1 mplemepkan nlvfgcqrss tsdddsgcal eeyawvppgl rpeqvqlyfa clpeekvpyv
       61 nspgekhrik qllyqlpphd nevrycqsls eeekkelqmf ssqrkkealg rgtikllsra
      121 vmhavceqcg tkvnggevav fasragpgvc whpscfvcft cnellvdliy fyqdgkihcg
      181 rhhaellkpr csacdeiifa decteaegrh whmkhfccle cetilggqry imkdgrpfcc
      241 ncfeslyaey cetcgehigv dhaqmtydgq hwhatetcfs caqcktsllg cpflpkqgqi
      301 ycsktcslge dvhasdssds afqsarsrds rrsirmgkss rsadqcrqsl llspalnykf
      361 sglsdnaddt lsrklddlsl sreeanfvne dfwkgrveqe mpedpeewae hedymtqlll
      421 kfgdkslfqq paevdirsse hwisdsmvks kldlkknnps laskkyqsdm ywaqsqdglg
      481 dsaygshpgp assrkiqeld mehgasgykh dqtpwyggsl eclsdlkqqe qsvrdsmdsl
      541 alsnitgasm dgegkprpsl yslqtfqele iedcekmsnm gtlnssmlhr steslkslss
      601 elcqakvspe ekpvhmpvlr rsksqsrpqq vkfsddvidn gsyenveirq ppmsertrrr
      661 vyhfeergnr pshhrrrsrk srsdnalnla aerrcsprer fryyspqdhe kfiqnrssrd
      721 irsyiqnael ygqyahtrsd yalrnqvvdk ffglygeedd swcstsssss dseeegyflg
      781 qpipqprslr ypyytddlsg pttalsssqf gqrttkskkk rghkgkncii s
//
LOCUS       XP_053907626             831 aa            linear   VRT 09-MAR-2023
DEFINITION  prickle-like protein 1 [Cuculus canorus].
ACCESSION   XP_053907626
VERSION     XP_053907626.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051651.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..831
                     /product="prickle-like protein 1"
                     /calculated_mol_wt=94469
     Region          22..118
                     /region_name="PET_Prickle"
                     /note="The PET domain of Prickle; cd09827"
                     /db_xref="CDD:193602"
     Region          126..184
                     /region_name="LIM1_Prickle_1"
                     /note="The first LIM domain of Prickle 1; cd09483"
                     /db_xref="CDD:188867"
     Site            order(126,129,152,155,158,161,179,182)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188867"
     Region          189..244
                     /region_name="LIM2_Prickle"
                     /note="The second LIM domain of Prickle; cd09418"
                     /db_xref="CDD:188802"
     Site            order(191,194,212,215,218,221,239,242)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188802"
     Region          249..307
                     /region_name="LIM3_Prickle"
                     /note="The third LIM domain of Prickle; cd09420"
                     /db_xref="CDD:188804"
     Site            order(251,254,273,278,281,284,302,306)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188804"
     CDS             1..831
                     /gene="PRICKLE1"
                     /coded_by="XM_054051651.1:68..2563"
                     /db_xref="GeneID:104062404"
ORIGIN      
        1 mplemepkan nlvfgcqrss tsdddsgcal eeyawvppgl rpeqvqlyfa clpeekvpyv
       61 nspgekhrik qllyqlpphd nevrycqsls eeekkelqmf ssqrkkealg rgtikllsra
      121 vmhavceqcg tkvnggevav fasragpgvc whpscfvcft cnellvdliy fyqdgkihcg
      181 rhhaellkpr csacdeiifa decteaegrh whmkhfccle cetilggqry imkdgrpfcc
      241 ncfeslyaey cetcgehigv dhaqmtydgq hwhatetcfs caqcktsllg cpflpkqgqi
      301 ycsktcslge dvhasdssds afqsarsrds rrsirmgkss rsadqcrqsl llspalnykf
      361 sglsdnaddt lsrklddlsl sreeanfvne dfwkgrveqe mpedpeewae hedymtqlll
      421 kfgdkslfqq paevdirsse hwisdsmvks kldlkknnps laskkyqsdm ywaqsqdglg
      481 dsaygshpgp assrkiqeld mehgasgykh dqtpwyggsl eclsdlkqqe qsvrdsmdsl
      541 alsnitgasm dgegkprpsl yslqtfqele iedcekmsnm gtlnssmlhr steslkslss
      601 elcqakvspe ekpvhmpvlr rsksqsrpqq vkfsddvidn gsyenveirq ppmsertrrr
      661 vyhfeergnr pshhrrrsrk srsdnalnla aerrcsprer fryyspqdhe kfiqnrssrd
      721 irsyiqnael ygqyahtrsd yalrnqvvdk ffglygeedd swcstsssss dseeegyflg
      781 qpipqprslr ypyytddlsg pttalsssqf gqrttkskkk rghkgkncii s
//
LOCUS       XP_053907637            1719 aa            linear   VRT 09-MAR-2023
DEFINITION  protein MON2 homolog isoform X1 [Cuculus canorus].
ACCESSION   XP_053907637
VERSION     XP_053907637.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051662.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1719
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1719
                     /product="protein MON2 homolog isoform X1"
                     /calculated_mol_wt=189756
     Region          9..171
                     /region_name="DCB"
                     /note="dimerization and cyclophilin-binding domain of
                     Mon2; pfam16213"
                     /db_xref="CDD:465072"
     Region          212..381
                     /region_name="Sec7_N"
                     /note="Guanine nucleotide exchange factor in Golgi
                     transport N-terminal; pfam12783"
                     /db_xref="CDD:463703"
     Region          <873..931
                     /region_name="DUF1981"
                     /note="Domain of unknown function (DUF1981); pfam09324"
                     /db_xref="CDD:462756"
     Region          934..1710
                     /region_name="Mon2_C"
                     /note="C-terminal region of Mon2 protein; pfam16206"
                     /db_xref="CDD:465066"
     CDS             1..1719
                     /gene="MON2"
                     /coded_by="XM_054051662.1:80..5239"
                     /db_xref="GeneID:104061277"
ORIGIN      
        1 msgtsspeav kkllenmqgd lrglslecrk kfppvkeaae sgiikvktia arnsdilaal
       61 kenssevvqp flmgcgtkep kitqlclaai qrlmshevvs eaaagniinm lwqlmensle
      121 elkllqtvlv llttntvvhd ealskaivlc frlhftkdni tnntaaatvr qvvtvvferv
      181 vaederykdi idqpvavqgn snrrsvstlk pcakdaymlf qdlcqlvnad apywlvgmte
      241 mtrtfglell esvlndfpqv flqhqefsfl lkervcplvi klfspnikfr qgssmssspa
      301 pvekpyfpic mrllrvvsvl ikqfysllvt eceiflsllv kfldadkpqw lravavesih
      361 rlcvqpqllr sfcqsydmkq hstkvfrdiv nalgsfiqsl flvpstgnts atpnqtgsna
      421 sgntgsaqtn pgvlgmggga tvlpafeyrg twipilnvtv qgsakatyle mldkveppti
      481 pegyamsvaf hclldlvrgi ttmiegelge aqtvsqttte ttslpaqsse qqdlqsisdq
      541 sekellsrav weemvnacwc gllaalslll dastdeaate nilkaeltma alcgrlglvt
      601 srdafitaic kgslpphyal tvlnsttaal ssksysiqgq nvqmispsse shqqvvavgq
      661 plalqpqgtv mltskniqcm rtllnlahch gavlgtswql vlatlqhlvw ilglkpgvgg
      721 alkpgraveg pstvlttavm tdlpvisnil srlfessqyl ddvslhhlin alcslsleam
      781 dmaygnnkep slfavaklle tglvnmhrie ilwrpltghl levcqhpnsr mrewgaealt
      841 slikagltfs hdpplsqnqr lqllllnplk elsnishpdi rikqlecvlq ilqsqgdslg
      901 pgwplvlgvm gairsdqges lirtafqclq lvvtdflptm pctclqivve vagsfglhnq
      961 elnisltsig llwnisdyff qrgeiiekel nkeeavlqkq aeekgvvlnr pfhpappfdc
     1021 lwlclyaklg elcvdprpav rksagqtlfs tigahgtllq hstwhtviwk vlfhlldrvr
     1081 essttadkek iesgggnili hhsrdtaekq waetwvltla gvarifntrr yllqplgdfs
     1141 qawdvlldhi qsaalsknne vslaalksfq eilqivspvr dsekpdtppa invsvpvvvg
     1201 tttatslgrs fmrtdsiger igryngsepp vitdeledln lwwaawnswy rigsestrpp
     1261 itcdkltfip sqpfltaliq ifpalyqhik tgfsmddlqk lgvilhgavs vpissdaspf
     1321 ilpsyteavl tslqeavlta ldvlqkaicv gsesmqimyp aifdqllafv efsckppqyg
     1381 qletkhiana kynqiqlfap aewvalnyvp faerslevvv dlyqktachk avvtekvlqn
     1441 iiktlripls lkyscpsest wklavsslik vlsiglpvar qhassgkfds mwpelantfe
     1501 dflftkstpp dnlsiqefqk nesidvevvq listeilpya nfipkefvgq imtmlnkgsi
     1561 hsqsssftea eidirmreef skvcfetllq fsfsnkvttp qegyisrmal svllkrsqdv
     1621 lhryiederl sgkcplprqq vteiifvlka vstlidslkk tqpenvdant waqvialypt
     1681 lvecitcsss evcsalkeal vpfkdfmhpp askvqnges
//
LOCUS       XP_053907647            1718 aa            linear   VRT 09-MAR-2023
DEFINITION  protein MON2 homolog isoform X2 [Cuculus canorus].
ACCESSION   XP_053907647
VERSION     XP_053907647.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051672.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1718
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1718
                     /product="protein MON2 homolog isoform X2"
                     /calculated_mol_wt=189779
     Region          9..171
                     /region_name="DCB"
                     /note="dimerization and cyclophilin-binding domain of
                     Mon2; pfam16213"
                     /db_xref="CDD:465072"
     Region          212..381
                     /region_name="Sec7_N"
                     /note="Guanine nucleotide exchange factor in Golgi
                     transport N-terminal; pfam12783"
                     /db_xref="CDD:463703"
     Region          <873..931
                     /region_name="DUF1981"
                     /note="Domain of unknown function (DUF1981); pfam09324"
                     /db_xref="CDD:462756"
     Region          934..1710
                     /region_name="Mon2_C"
                     /note="C-terminal region of Mon2 protein; pfam16206"
                     /db_xref="CDD:465066"
     CDS             1..1718
                     /gene="MON2"
                     /coded_by="XM_054051672.1:80..5236"
                     /db_xref="GeneID:104061277"
ORIGIN      
        1 msgtsspeav kkllenmqgd lrglslecrk kfppvkeaae sgiikvktia arnsdilaal
       61 kenssevvqp flmgcgtkep kitqlclaai qrlmshevvs eaaagniinm lwqlmensle
      121 elkllqtvlv llttntvvhd ealskaivlc frlhftkdni tnntaaatvr qvvtvvferv
      181 vaederykdi idqpvavqgn snrrsvstlk pcakdaymlf qdlcqlvnad apywlvgmte
      241 mtrtfglell esvlndfpqv flqhqefsfl lkervcplvi klfspnikfr qgssmssspa
      301 pvekpyfpic mrllrvvsvl ikqfysllvt eceiflsllv kfldadkpqw lravavesih
      361 rlcvqpqllr sfcqsydmkq hstkvfrdiv nalgsfiqsl flvpstgnts atpnqtgsna
      421 sgntgsaqtn pgvlgmggga tvlpafeyrg twipilnvtv qgsakatyle mldkveppti
      481 pegyamsvaf hclldlvrgi ttmiegelge aqtvsqttte ttslpaqsse qqdlqsisdq
      541 sekellsrav weemvnacwc gllaalslll dastdeaate nilkaeltma alcgrlglvt
      601 srdafitaic kgslpphyal tvlnsttaal ssksysiqgq nvqmispsse shqqvvavgq
      661 plalqpqgtv mltskniqcm rtllnlahch gavlgtswql vlatlqhlvw ilglkpgvgg
      721 alkpgraveg pstvlttavm tdlpvisnil srlfessqyl ddvslhhlin alcslsleam
      781 dmaygnnkep slfavaklle tglvnmhrie ilwrpltghl levcqhpnsr mrewgaealt
      841 slikagltfs hdpplsqnqr lqllllnplk elsnishpdi rikqlecvlq ilqsqgdslg
      901 pgwplvlgvm gairsdqges lirtafqclq lvvtdflptm pctclqivve vagsfglhnq
      961 elnisltsig llwnisdyff qrgeiiekel nkeeavlqkq aeekgvvlnr pfhpappfdc
     1021 lwlclyaklg elcvdprpav rksagqtlfs tigahgtllq hstwhtviwk vlfhlldrvr
     1081 essttadkek iesgggnili hhsrdtaekq waetwvltla gvarifntrr yllqplgdfs
     1141 qawdvlldhi qsaalsknne vslaalksfq eilqivspvr dsekpdtppa invsvpvvvg
     1201 tttatslgrs fmrtdsiger igryngsepp vitdeledln lwwaawnswy rigsestrpp
     1261 itcdkltfip sqpfltaliq ifpalyqhik tgfsmddlqk lgvilhgavs vpissdaspf
     1321 ilpsyteavl tslqeavlta ldvlqkaicv gsesmqimyp aifdqllafv efsckppqyg
     1381 qletkhiana kynqiqlfap aewvalnyvp faerslevvv dlyqktachk avvtekvlqn
     1441 iiktlripls lkyscpsest wklavsslik vlsiglpvar qhassgkfds mwpelantfe
     1501 dflftkstpp dnlsiqefqk nesidvevvq listeilpya nfipkefvgq imtmlnkgsi
     1561 hsqsssftea eidirmreef skvcfetllq fsfsnkvttp qegyisrmal svllkrsqdv
     1621 lhryiederl sgkcplprqq vteiifvlka vstlidslkk tqpenvdant waqvialypt
     1681 lvecitcsss evcsalkeal vpfkdfmhpp askyfgnr
//
LOCUS       XP_053907655            1716 aa            linear   VRT 09-MAR-2023
DEFINITION  protein MON2 homolog isoform X3 [Cuculus canorus].
ACCESSION   XP_053907655
VERSION     XP_053907655.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051680.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1716
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1716
                     /product="protein MON2 homolog isoform X3"
                     /calculated_mol_wt=189498
     Region          9..171
                     /region_name="DCB"
                     /note="dimerization and cyclophilin-binding domain of
                     Mon2; pfam16213"
                     /db_xref="CDD:465072"
     Region          212..381
                     /region_name="Sec7_N"
                     /note="Guanine nucleotide exchange factor in Golgi
                     transport N-terminal; pfam12783"
                     /db_xref="CDD:463703"
     Region          <873..931
                     /region_name="DUF1981"
                     /note="Domain of unknown function (DUF1981); pfam09324"
                     /db_xref="CDD:462756"
     Region          934..1710
                     /region_name="Mon2_C"
                     /note="C-terminal region of Mon2 protein; pfam16206"
                     /db_xref="CDD:465066"
     CDS             1..1716
                     /gene="MON2"
                     /coded_by="XM_054051680.1:80..5230"
                     /db_xref="GeneID:104061277"
ORIGIN      
        1 msgtsspeav kkllenmqgd lrglslecrk kfppvkeaae sgiikvktia arnsdilaal
       61 kenssevvqp flmgcgtkep kitqlclaai qrlmshevvs eaaagniinm lwqlmensle
      121 elkllqtvlv llttntvvhd ealskaivlc frlhftkdni tnntaaatvr qvvtvvferv
      181 vaederykdi idqpvavqgn snrrsvstlk pcakdaymlf qdlcqlvnad apywlvgmte
      241 mtrtfglell esvlndfpqv flqhqefsfl lkervcplvi klfspnikfr qgssmssspa
      301 pvekpyfpic mrllrvvsvl ikqfysllvt eceiflsllv kfldadkpqw lravavesih
      361 rlcvqpqllr sfcqsydmkq hstkvfrdiv nalgsfiqsl flvpstgnts atpnqtgsna
      421 sgntgsaqtn pgvlgmggga tvlpafeyrg twipilnvtv qgsakatyle mldkveppti
      481 pegyamsvaf hclldlvrgi ttmiegelge aqtvsqttte ttslpaqsse qqdlqsisdq
      541 sekellsrav weemvnacwc gllaalslll dastdeaate nilkaeltma alcgrlglvt
      601 srdafitaic kgslpphyal tvlnsttaal ssksysiqgq nvqmispsse shqqvvavgq
      661 plalqpqgtv mltskniqcm rtllnlahch gavlgtswql vlatlqhlvw ilglkpgvgg
      721 alkpgraveg pstvlttavm tdlpvisnil srlfessqyl ddvslhhlin alcslsleam
      781 dmaygnnkep slfavaklle tglvnmhrie ilwrpltghl levcqhpnsr mrewgaealt
      841 slikagltfs hdpplsqnqr lqllllnplk elsnishpdi rikqlecvlq ilqsqgdslg
      901 pgwplvlgvm gairsdqges lirtafqclq lvvtdflptm pctclqivve vagsfglhnq
      961 elnisltsig llwnisdyff qrgeiiekel nkeeavlqkq aeekgvvlnr pfhpappfdc
     1021 lwlclyaklg elcvdprpav rksagqtlfs tigahgtllq hstwhtviwk vlfhlldrvr
     1081 essttadkek iesgggnili hhsrdtaekq waetwvltla gvarifntrr yllqplgdfs
     1141 qawdvlldhi qsaalsknne vslaalksfq eilqivspvr dsekpdtppa invsvpvvvg
     1201 tttatslgrs fmrtdsiger igryngsepp vitdeledln lwwaawnswy rigsestrpp
     1261 itcdkltfip sqpfltaliq ifpalyqhik tgfsmddlqk lgvilhgavs vpissdaspf
     1321 ilpsyteavl tslqeavlta ldvlqkaicv gsesmqimyp aifdqllafv efsckppqyg
     1381 qletkhiana kynqiqlfap aewvalnyvp faerslevvv dlyqktachk avvtekvlqn
     1441 iiktlripls lkyscpsest wklavsslik vlsiglpvar qhassgkfds mwpelantfe
     1501 dflftkstpp dnlsiqefqk nesidvevvq listeilpya nfipkefvgq imtmlnkgsi
     1561 hsqsssftea eidirmreef skvcfetllq fsfsnkvttp qegyisrmal svllkrsqdv
     1621 lhryiederl sgkcplprqq vteiifvlka vstlidslkk tqpenvdant waqvialypt
     1681 lvecitcsss evcsalkeal vpfkdfmhpp asknei
//
LOCUS       XP_053907666            1713 aa            linear   VRT 09-MAR-2023
DEFINITION  protein MON2 homolog isoform X4 [Cuculus canorus].
ACCESSION   XP_053907666
VERSION     XP_053907666.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051691.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1713
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1713
                     /product="protein MON2 homolog isoform X4"
                     /calculated_mol_wt=189086
     Region          9..171
                     /region_name="DCB"
                     /note="dimerization and cyclophilin-binding domain of
                     Mon2; pfam16213"
                     /db_xref="CDD:465072"
     Region          212..381
                     /region_name="Sec7_N"
                     /note="Guanine nucleotide exchange factor in Golgi
                     transport N-terminal; pfam12783"
                     /db_xref="CDD:463703"
     Region          <873..931
                     /region_name="DUF1981"
                     /note="Domain of unknown function (DUF1981); pfam09324"
                     /db_xref="CDD:462756"
     Region          934..1704
                     /region_name="Mon2_C"
                     /note="C-terminal region of Mon2 protein; pfam16206"
                     /db_xref="CDD:465066"
     CDS             1..1713
                     /gene="MON2"
                     /coded_by="XM_054051691.1:80..5221"
                     /db_xref="GeneID:104061277"
ORIGIN      
        1 msgtsspeav kkllenmqgd lrglslecrk kfppvkeaae sgiikvktia arnsdilaal
       61 kenssevvqp flmgcgtkep kitqlclaai qrlmshevvs eaaagniinm lwqlmensle
      121 elkllqtvlv llttntvvhd ealskaivlc frlhftkdni tnntaaatvr qvvtvvferv
      181 vaederykdi idqpvavqgn snrrsvstlk pcakdaymlf qdlcqlvnad apywlvgmte
      241 mtrtfglell esvlndfpqv flqhqefsfl lkervcplvi klfspnikfr qgssmssspa
      301 pvekpyfpic mrllrvvsvl ikqfysllvt eceiflsllv kfldadkpqw lravavesih
      361 rlcvqpqllr sfcqsydmkq hstkvfrdiv nalgsfiqsl flvpstgnts atpnqtgsna
      421 sgntgsaqtn pgvlgmggga tvlpafeyrg twipilnvtv qgsakatyle mldkveppti
      481 pegyamsvaf hclldlvrgi ttmiegelge aqtvsqttte ttslpaqsse qqdlqsisdq
      541 sekellsrav weemvnacwc gllaalslll dastdeaate nilkaeltma alcgrlglvt
      601 srdafitaic kgslpphyal tvlnsttaal ssksysiqgq nvqmispsse shqqvvavgq
      661 plalqpqgtv mltskniqcm rtllnlahch gavlgtswql vlatlqhlvw ilglkpgvgg
      721 alkpgraveg pstvlttavm tdlpvisnil srlfessqyl ddvslhhlin alcslsleam
      781 dmaygnnkep slfavaklle tglvnmhrie ilwrpltghl levcqhpnsr mrewgaealt
      841 slikagltfs hdpplsqnqr lqllllnplk elsnishpdi rikqlecvlq ilqsqgdslg
      901 pgwplvlgvm gairsdqges lirtafqclq lvvtdflptm pctclqivve vagsfglhnq
      961 elnisltsig llwnisdyff qrgeiiekel nkeeavlqkq aeekgvvlnr pfhpappfdc
     1021 lwlclyaklg elcvdprpav rksagqtlfs tigahgtllq hstwhtviwk vlfhlldrvr
     1081 essttadkek iesgggnili hhsrdtaekq waetwvltla gvarifntrr yllqplgdfs
     1141 qawdvlldhi qsaalsknne vslaalksfq eilqivspvr dsekpdtppa invsvpvvvg
     1201 tttatslgrs fmrtdsiger igryngsepp vitdeledln lwwaawnswy rigsestrpp
     1261 itcdkltfip sqpfltaliq ifpalyqhik tgfsmddlqk lgvilhgavs vpissdaspf
     1321 ilpsyteavl tslqeavlta ldvlqkaicv gsesmqimyp aifdqllafv efsckppqyg
     1381 qletkhiana kynqaewval nyvpfaersl evvvdlyqkt achkavvtek vlqniiktlr
     1441 iplslkyscp sestwklavs slikvlsigl pvarqhassg kfdsmwpela ntfedflftk
     1501 stppdnlsiq efqknesidv evvqlistei lpyanfipke fvgqimtmln kgsihsqsss
     1561 fteaeidirm reefskvcfe tllqfsfsnk vttpqegyis rmalsvllkr sqdvlhryie
     1621 derlsgkcpl prqqvteiif vlkavstlid slkktqpenv dantwaqvia lyptlvecit
     1681 csssevcsal kealvpfkdf mhppaskvqn ges
//
LOCUS       XP_053907675            1663 aa            linear   VRT 09-MAR-2023
DEFINITION  protein MON2 homolog isoform X5 [Cuculus canorus].
ACCESSION   XP_053907675
VERSION     XP_053907675.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051700.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1663
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1663
                     /product="protein MON2 homolog isoform X5"
                     /calculated_mol_wt=183774
     Region          <1..115
                     /region_name="DCB"
                     /note="dimerization and cyclophilin-binding domain of
                     Mon2; pfam16213"
                     /db_xref="CDD:465072"
     Region          156..325
                     /region_name="Sec7_N"
                     /note="Guanine nucleotide exchange factor in Golgi
                     transport N-terminal; pfam12783"
                     /db_xref="CDD:463703"
     Region          <817..875
                     /region_name="DUF1981"
                     /note="Domain of unknown function (DUF1981); pfam09324"
                     /db_xref="CDD:462756"
     Region          878..1654
                     /region_name="Mon2_C"
                     /note="C-terminal region of Mon2 protein; pfam16206"
                     /db_xref="CDD:465066"
     CDS             1..1663
                     /gene="MON2"
                     /coded_by="XM_054051700.1:68..5059"
                     /db_xref="GeneID:104061277"
ORIGIN      
        1 mpalkensse vvqpflmgcg tkepkitqlc laaiqrlmsh evvseaaagn iinmlwqlme
       61 nsleelkllq tvlvllttnt vvhdealska ivlcfrlhft kdnitnntaa atvrqvvtvv
      121 fervvaeder ykdiidqpva vqgnsnrrsv stlkpcakda ymlfqdlcql vnadapywlv
      181 gmtemtrtfg lellesvlnd fpqvflqhqe fsfllkervc plviklfspn ikfrqgssms
      241 sspapvekpy fpicmrllrv vsvlikqfys llvteceifl sllvkfldad kpqwlravav
      301 esihrlcvqp qllrsfcqsy dmkqhstkvf rdivnalgsf iqslflvpst gntsatpnqt
      361 gsnasgntgs aqtnpgvlgm gggatvlpaf eyrgtwipil nvtvqgsaka tylemldkve
      421 pptipegyam svafhclldl vrgittmieg elgeaqtvsq tttettslpa qsseqqdlqs
      481 isdqsekell sravweemvn acwcgllaal sllldastde aatenilkae ltmaalcgrl
      541 glvtsrdafi taickgslpp hyaltvlnst taalssksys iqgqnvqmis psseshqqvv
      601 avgqplalqp qgtvmltskn iqcmrtllnl ahchgavlgt swqlvlatlq hlvwilglkp
      661 gvggalkpgr avegpstvlt tavmtdlpvi snilsrlfes sqylddvslh hlinalcsls
      721 leamdmaygn nkepslfava klletglvnm hrieilwrpl tghllevcqh pnsrmrewga
      781 ealtslikag ltfshdppls qnqrlqllll nplkelsnis hpdirikqle cvlqilqsqg
      841 dslgpgwplv lgvmgairsd qgeslirtaf qclqlvvtdf lptmpctclq ivvevagsfg
      901 lhnqelnisl tsigllwnis dyffqrgeii ekelnkeeav lqkqaeekgv vlnrpfhpap
      961 pfdclwlcly aklgelcvdp rpavrksagq tlfstigahg tllqhstwht viwkvlfhll
     1021 drvresstta dkekiesggg nilihhsrdt aekqwaetwv ltlagvarif ntrryllqpl
     1081 gdfsqawdvl ldhiqsaals knnevslaal ksfqeilqiv spvrdsekpd tppainvsvp
     1141 vvvgtttats lgrsfmrtds igerigryng seppvitdel edlnlwwaaw nswyrigses
     1201 trppitcdkl tfipsqpflt aliqifpaly qhiktgfsmd dlqklgvilh gavsvpissd
     1261 aspfilpsyt eavltslqea vltaldvlqk aicvgsesmq imypaifdql lafvefsckp
     1321 pqygqletkh ianakynqiq lfapaewval nyvpfaersl evvvdlyqkt achkavvtek
     1381 vlqniiktlr iplslkyscp sestwklavs slikvlsigl pvarqhassg kfdsmwpela
     1441 ntfedflftk stppdnlsiq efqknesidv evvqlistei lpyanfipke fvgqimtmln
     1501 kgsihsqsss fteaeidirm reefskvcfe tllqfsfsnk vttpqegyis rmalsvllkr
     1561 sqdvlhryie derlsgkcpl prqqvteiif vlkavstlid slkktqpenv dantwaqvia
     1621 lyptlvecit csssevcsal kealvpfkdf mhppaskvqn ges
//
LOCUS       XP_053907689             514 aa            linear   VRT 09-MAR-2023
DEFINITION  protein phosphatase 1H [Cuculus canorus].
ACCESSION   XP_053907689
VERSION     XP_053907689.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051714.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..514
                     /product="protein phosphatase 1H"
                     /calculated_mol_wt=56501
     Region          136..507
                     /region_name="PP2Cc"
                     /note="Serine/threonine phosphatases, family 2C, catalytic
                     domain; The protein architecture and deduced catalytic
                     mechanism of PP2C phosphatases are similar to the PP1,
                     PP2A, PP2B family of protein Ser/Thr phosphatases, with
                     which PP2C shares no sequence...; cd00143"
                     /db_xref="CDD:238083"
     CDS             1..514
                     /gene="PPM1H"
                     /coded_by="XM_054051714.1:190..1734"
                     /db_xref="GeneID:104061486"
ORIGIN      
        1 mltrvksava nfmggimagg agaehggsgg gadlplrfpy grpeflglsp devecsadhi
       61 arpililskd trrlpwttgy aevinagkst hnedqascev lfvkkktggs nstpnknstk
      121 rrsslpngeg lqlkensdsd ginlyywslf dghagsgaav vaskllqhhi ldqlqeivdi
      181 lrntailppt clgeepdnpa tnsrtltraa slrgsvgapg spstpptrff tekkiphecl
      241 vigaiesafk emdlqierer tvynisggct alvvvyllgk lyvanagdsr aiiirngevi
      301 pmsseftpet erqrlqylay mqphllgnef thlefprrvq rkevgkrmly rdfnmtgway
      361 ktieeddlkf pliygegkka rvmatigvtr glgdhdlkvh dsniyikpfl ssspevrvyd
      421 llqyehgpdd vlilatdglw dvllneevae avtnflpncd pddphrytla aqdlvmrarg
      481 vlkdrgwris ndrlgsgddi svyviplihg nkqs
//
LOCUS       XP_053907697             312 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: olfactory receptor 2A2-like [Cuculus canorus].
ACCESSION   XP_053907697
VERSION     XP_053907697.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051722.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 2 genomic stop codon
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..312
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..312
                     /product="LOW QUALITY PROTEIN: olfactory receptor
                     2A2-like"
                     /calculated_mol_wt=34671
     Region          23..299
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          25..49
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          58..80
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          96..118
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          141..157
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          194..217
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          236..258
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..312
                     /gene="LOC104060654"
                     /coded_by="XM_054051722.1:1..939"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon;
                     substituted 2 bases at 2 genomic stop codons"
                     /db_xref="GeneID:104060654"
ORIGIN      
        1 mqnktsvtef iligfsskpa lqlclfslfs vfxsatlmgn alvfvlicld chlhspmylf
       61 lchlsvvdic ytsnnvphml rnllgkxrti sfaecgirih lylvlaltgs mllavisydh
      121 ymaichplry afimnwrvyf tlvavswasg fifgtlqasl alnlhvcgpc eadhffceil
      181 avlelactdt tankylilav cvcfflfpla lilisylcil atillirsxv awhktfstcg
      241 syltvvglfy gnaifmymgp grcnssgmek ayslfyslvs ptlnpltysl rnkqvrevll
      301 kiqrrkrvfh sm
//
LOCUS       XP_053907711             711 aa            linear   VRT 09-MAR-2023
DEFINITION  complement C1r subcomponent [Cuculus canorus].
ACCESSION   XP_053907711
VERSION     XP_053907711.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051736.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..711
                     /product="complement C1r subcomponent"
                     /calculated_mol_wt=80053
     Site            order(26,28,30,57,62,104,135,137,139..140)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     Region          27..138
                     /region_name="CUB"
                     /note="Domain first found in C1r, C1s, uEGF, and bone
                     morphogenetic protein; smart00042"
                     /db_xref="CDD:214483"
     Region          146..188
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          192..301
                     /region_name="CUB"
                     /note="CUB domain; pfam00431"
                     /db_xref="CDD:395345"
     Site            order(201,203,205,232,237,274,298,300,302..303)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     Region          308..370
                     /region_name="Sushi"
                     /note="Sushi repeat (SCR repeat); pfam00084"
                     /db_xref="CDD:459664"
     Region          375..430
                     /region_name="CCP"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     cd00033"
                     /db_xref="CDD:153056"
     Site            order(385,406)
                     /site_type="active"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     Region          458..702
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            459
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(497,558,659)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(653,680,682)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..711
                     /gene="C1R"
                     /coded_by="XM_054051736.1:123..2258"
                     /db_xref="GeneID:104064392"
ORIGIN      
        1 mrvpfllwaf lffgvissss vprklfgeir spgypkpypn nnistwnihv pkgyvvkltf
       61 ryfdlepses cfydyvkika dkknlgrycg qlglttgnhp grkefvskgn rmhlefhsdf
      121 snedngtvip yrgflayyqa vdldecdpnn aseedgkpgc qhfchnyvgg yfcscrtgyq
      181 lqtdhhsckv ecsselftea sgylsspeyp qpypedlqcn ysirlqkgls iilkflepfe
      241 idehqqvhcp ydqlkiqvrg reigefcgqe spgsietnsn evdilfltde sgfsrgwkir
      301 ytsekircpq pvprdqftvi rdlqpvyefq dyfivscktg ynlmegnqkl lsftavcqad
      361 gtwhksmprc eivncgnptd ltngafsyvd tpannnyqsv ityrcnepyy hivtethdgd
      421 rftcsaegtw vdqdgqvrip aclpvcgkpv npvtevqril ggrsarrgnf pwqaltgihg
      481 rgggallgdr wiltaahsif pkgaggnnas leqlaedanv flghtkveel ykmgnhpvrr
      541 ifihpdynpk dehnfngdia llelkhpvtl gptvqpiclp dttnttfymd ghigyvsgfg
      601 veknfisndl kyvslpavar ekcqswldsk krdipmvfse nmfcagfltv krdtcqgdsg
      661 svitvldtas grwvatgivs wgigcaegyg fytkilnyld wikgiiredr l
//
LOCUS       XP_009564979             135 aa            linear   VRT 09-MAR-2023
DEFINITION  retinol-binding protein 5 [Cuculus canorus].
ACCESSION   XP_009564979
VERSION     XP_009564979.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566684.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..135
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..135
                     /product="retinol-binding protein 5"
                     /calculated_mol_wt=15773
     Region          4..134
                     /region_name="lipocalin_FABP"
                     /note="lipocalin/cytosolic fatty acid-binding protein
                     family; cl10502"
                     /db_xref="CDD:471979"
     Site            order(5,9,41,43,50,52,54,61,63,65,96,98,105,107,109,116,
                     118,120,127,129,131)
                     /site_type="other"
                     /note="ligand binding cavity [chemical binding]"
                     /db_xref="CDD:381182"
     CDS             1..135
                     /gene="RBP5"
                     /coded_by="XM_009566684.2:180..587"
                     /db_xref="GeneID:104064358"
ORIGIN      
        1 mppnltgyyr fvsqenmdny lraldinvvl rklvcllkpd keilhtgdhm virtitslrd
       61 yvmdfdlgvq feedlgpvdg rkcqttvfwe gdqlvceqlg ekrnrgwrhw megdqlhlrm
      121 taedevcvqv fqkvk
//
LOCUS       XP_009555509             254 aa            linear   VRT 09-MAR-2023
DEFINITION  OX-2 membrane glycoprotein [Cuculus canorus].
ACCESSION   XP_009555509
VERSION     XP_009555509.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557214.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555509.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..254
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..254
                     /product="OX-2 membrane glycoprotein"
                     /calculated_mol_wt=28074
     Region          29..127
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          35..39
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409433"
     Region          49..53
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409433"
     Region          92..96
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409433"
     Region          106..111
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409433"
     Region          120..123
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409433"
     Region          143..203
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          143..147
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409384"
     Region          156..160
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409384"
     Region          183..187
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409384"
     Region          197..202
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409384"
     CDS             1..254
                     /gene="LOC104056009"
                     /coded_by="XM_009557214.2:731..1495"
                     /db_xref="GeneID:104056009"
ORIGIN      
        1 mtlralvlcl acaglgkanv vpqaehrnvr vgdnvtlsca ltepknvlqv twqkdseksh
       61 nniatystin glkihkpyqd rmnftslvln ktsiiiwdtr mddsgcytcl fntfpygsft
      121 grtclsvfgl nasvhynise grliaicnav gfpeptitwn nlfnstptqe tvrhtngmvs
      181 itskleiyst qsigaqgltc kvsntnekie lpvkmkgeeg ssllwlmitv giliviivli
      241 litlcwrkri crrg
//
LOCUS       XP_053907740             254 aa            linear   VRT 09-MAR-2023
DEFINITION  OX-2 membrane glycoprotein [Cuculus canorus].
ACCESSION   XP_053907740
VERSION     XP_053907740.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051765.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..254
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..254
                     /product="OX-2 membrane glycoprotein"
                     /calculated_mol_wt=28074
     Region          29..127
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          35..39
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409433"
     Region          49..53
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409433"
     Region          92..96
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409433"
     Region          106..111
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409433"
     Region          120..123
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409433"
     Region          143..203
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          143..147
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409384"
     Region          156..160
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409384"
     Region          183..187
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409384"
     Region          197..202
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409384"
     CDS             1..254
                     /gene="LOC104056009"
                     /coded_by="XM_054051765.1:169..933"
                     /db_xref="GeneID:104056009"
ORIGIN      
        1 mtlralvlcl acaglgkanv vpqaehrnvr vgdnvtlsca ltepknvlqv twqkdseksh
       61 nniatystin glkihkpyqd rmnftslvln ktsiiiwdtr mddsgcytcl fntfpygsft
      121 grtclsvfgl nasvhynise grliaicnav gfpeptitwn nlfnstptqe tvrhtngmvs
      181 itskleiyst qsigaqgltc kvsntnekie lpvkmkgeeg ssllwlmitv giliviivli
      241 litlcwrkri crrg
//
LOCUS       XP_009554577             446 aa            linear   VRT 09-MAR-2023
DEFINITION  KICSTOR subunit 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_009554577
VERSION     XP_009554577.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556282.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554577.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..446
                     /product="KICSTOR subunit 2 isoform X1"
                     /calculated_mol_wt=50623
     Region          10..445
                     /region_name="C12orf66_like"
                     /note="KICSTOR complex C12orf66 like; pfam09404"
                     /db_xref="CDD:401380"
     CDS             1..446
                     /gene="KICS2"
                     /coded_by="XM_009556282.2:82..1422"
                     /db_xref="GeneID:104055183"
ORIGIN      
        1 mgesiplgap vpveqavlet ffshlgifsy dkakdnveke reanksagas wlallaalah
       61 laaaekayhs mtflgqklgg qsffsrkdsi rtiytslhne lkkvvatgrn alggtaphle
      121 ellshlseql cffvqarmei adfyekmytl stqkfinsee lvnilesilk kysprfhhpi
      181 lsplessfql evdvlahllk aqaqisewkf lpslvnlhta htklqtwgqi fekqretkkh
      241 lfggqsqkav qpphlflwlm klknillakf sfyfhealsr qttasemktl taktnpdyyg
      301 kissfirkyd avnvslifdn rgsesfqghg yhhphsyrea pkgvdqypav vslpsdrpvm
      361 hwpnvimimt drtsdlnsle kvvhfyddkv qstyfltrpe phftivvife skkserdyhf
      421 isflneishs lknskafasl kpgskg
//
LOCUS       XP_053907762             420 aa            linear   VRT 09-MAR-2023
DEFINITION  KICSTOR subunit 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053907762
VERSION     XP_053907762.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051787.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..420
                     /product="KICSTOR subunit 2 isoform X2"
                     /calculated_mol_wt=47941
     Region          10..419
                     /region_name="C12orf66_like"
                     /note="KICSTOR complex C12orf66 like; pfam09404"
                     /db_xref="CDD:401380"
     CDS             1..420
                     /gene="KICS2"
                     /coded_by="XM_054051787.1:82..1344"
                     /db_xref="GeneID:104055183"
ORIGIN      
        1 mgesiplgap vpveqavlet ffshlgifsy dkakdnveke reanksagas wlallaalah
       61 laaaekayhs mtflgqklgg qsffsrkdsi rtiytslhne lkklcffvqa rmeiadfyek
      121 mytlstqkfi nseelvnile silkkysprf hhpilsples sfqlevdvla hllkaqaqis
      181 ewkflpslvn lhtahtklqt wgqifekqre tkkhlfggqs qkavqpphlf lwlmklknil
      241 lakfsfyfhe alsrqttase mktltaktnp dyygkissfi rkydavnvsl ifdnrgsesf
      301 qghgyhhphs yreapkgvdq ypavvslpsd rpvmhwpnvi mimtdrtsdl nslekvvhfy
      361 ddkvqstyfl trpephftiv vifeskkser dyhfisflne ishslknska faslkpgskg
//
LOCUS       XP_053907777             895 aa            linear   VRT 09-MAR-2023
DEFINITION  chromodomain-helicase-DNA-binding protein 1-like isoform X1
            [Cuculus canorus].
ACCESSION   XP_053907777
VERSION     XP_053907777.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051802.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..895
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..895
                     /product="chromodomain-helicase-DNA-binding protein 1-like
                     isoform X1"
                     /calculated_mol_wt=101341
     Region          35..>532
                     /region_name="PLN03142"
                     /note="Probable chromatin-remodeling complex ATPase chain;
                     Provisional"
                     /db_xref="CDD:215601"
     Region          714..864
                     /region_name="Macro_Poa1p-like_SNF2"
                     /note="macrodomain, Poa1p-like family, SNF2 subfamily;
                     cd03331"
                     /db_xref="CDD:394880"
     Site            order(720..723,736..739,743..749,751,801..802,839..846)
                     /site_type="other"
                     /note="putative ADP-ribose binding site [chemical
                     binding]"
                     /db_xref="CDD:394880"
     CDS             1..895
                     /gene="CHD1L"
                     /coded_by="XM_054051802.1:70..2757"
                     /db_xref="GeneID:104055808"
ORIGIN      
        1 msrflqalrr agsaragcag lgeadtgqwg ltgiklrpyq vegvkwlvqc yevqhgcilg
       61 demglgktcq tislllyltk kitnnerfli lcplsvlsnw keelerfapg lsfvtyigsk
      121 eerpklqqnl keqphfhall ttyeiclkda aflksfnwaa lvvdeahrlk nqssllhktl
      181 sefsvgfsll ltgtpiqnsl qelysllsli epdifpreqv kefveyyqav ekesesakel
      241 hnllqpfllr rvksevaael pkkvevvlyh gmsalqrkyy kailtkdlda fesetgrkvt
      301 lqnvliqlrk cvahpylfng vepepfeigd hiveasgkly lldkllsfly agghrvllfs
      361 qmtqlldimq dymdyrgysy erldgsvrge erhlaiknfg qqpififlls traggvgmnl
      421 taadtviftd sdfnpqndlq aiarahrigq hkpvkiirli grdtieeiiy rraasklrlt
      481 naiveggqfa lgapkpqgas dlqlseilky gldkllsseg stiqdvdlek ilgetkggkw
      541 vmdtvlphee eneeedtesf kfffkdhmyv yegkdyskep sredkrafdq lldlqkalte
      601 etskegralr nkanvlltgl repstrrkhl lsteelearr kkrqeaaakr arlmeekkka
      661 kaeaehkkkm awweenhyts tclpsegsdf eeeleedeag lnvdlhyeda dlnsikyimg
      721 dvthpkaeee daivvhcldd sgrwgrgglf talearsdqp rkiyemagkm kdlelggtll
      781 fpiddkksrt kgqdllaliv aqhrdrsnnl sgiklsalek glkkiylaak krnatvhlpr
      841 igyatkgfnw ygterlirky latrgiptli yyfprnkgsa sasqpnsssv tvskp
//
LOCUS       XP_053907785             888 aa            linear   VRT 09-MAR-2023
DEFINITION  chromodomain-helicase-DNA-binding protein 1-like isoform X2
            [Cuculus canorus].
ACCESSION   XP_053907785
VERSION     XP_053907785.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051810.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..888
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..888
                     /product="chromodomain-helicase-DNA-binding protein 1-like
                     isoform X2"
                     /calculated_mol_wt=100408
     Region          35..>532
                     /region_name="PLN03142"
                     /note="Probable chromatin-remodeling complex ATPase chain;
                     Provisional"
                     /db_xref="CDD:215601"
     Region          707..857
                     /region_name="Macro_Poa1p-like_SNF2"
                     /note="macrodomain, Poa1p-like family, SNF2 subfamily;
                     cd03331"
                     /db_xref="CDD:394880"
     Site            order(713..716,729..732,736..742,744,794..795,832..839)
                     /site_type="other"
                     /note="putative ADP-ribose binding site [chemical
                     binding]"
                     /db_xref="CDD:394880"
     CDS             1..888
                     /gene="CHD1L"
                     /coded_by="XM_054051810.1:70..2736"
                     /db_xref="GeneID:104055808"
ORIGIN      
        1 msrflqalrr agsaragcag lgeadtgqwg ltgiklrpyq vegvkwlvqc yevqhgcilg
       61 demglgktcq tislllyltk kitnnerfli lcplsvlsnw keelerfapg lsfvtyigsk
      121 eerpklqqnl keqphfhall ttyeiclkda aflksfnwaa lvvdeahrlk nqssllhktl
      181 sefsvgfsll ltgtpiqnsl qelysllsli epdifpreqv kefveyyqav ekesesakel
      241 hnllqpfllr rvksevaael pkkvevvlyh gmsalqrkyy kailtkdlda fesetgrkvt
      301 lqnvliqlrk cvahpylfng vepepfeigd hiveasgkly lldkllsfly agghrvllfs
      361 qmtqlldimq dymdyrgysy erldgsvrge erhlaiknfg qqpififlls traggvgmnl
      421 taadtviftd sdfnpqndlq aiarahrigq hkpvkiirli grdtieeiiy rraasklrlt
      481 naiveggqfa lgapkpqgas dlqlseilky gldkllsseg stiqdvdlek ilgetkggkw
      541 vmdtvlphee eneeedtenh myvyegkdys kepsredkra fdqlldlqka lteetskegr
      601 alrnkanvll tglrepstrr khllsteele arrkkrqeaa akrarlmeek kkakaeaehk
      661 kkmawweenh ytstclpseg sdfeeeleed eaglnvdlhy edadlnsiky imgdvthpka
      721 eeedaivvhc lddsgrwgrg glftalears dqprkiyema gkmkdlelgg tllfpiddkk
      781 srtkgqdlla livaqhrdrs nnlsgiklsa lekglkkiyl aakkrnatvh lprigyatkg
      841 fnwygterli rkylatrgip tliyyfprnk gsasasqpns ssvtvskp
//
LOCUS       XP_053907800             438 aa            linear   VRT 09-MAR-2023
DEFINITION  purine nucleoside phosphorylase LACC1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053907800
VERSION     XP_053907800.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051825.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..438
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..438
                     /product="purine nucleoside phosphorylase LACC1 isoform
                     X1"
                     /calculated_mol_wt=48428
     Region          198..434
                     /region_name="Cu-oxidase_4"
                     /note="Multi-copper polyphenol oxidoreductase laccase;
                     pfam02578"
                     /db_xref="CDD:460601"
     CDS             1..438
                     /gene="LACC1"
                     /coded_by="XM_054051825.1:247..1563"
                     /db_xref="GeneID:104056511"
ORIGIN      
        1 mveavlldlf slpansqtni qgllcntvet iekcssipap fvyvmfcqrq gdernseqes
       61 slpdlrvfqs lkkrlevvha staaaalyti kqrldekdls vikvilptlr kdlmkvyidh
      121 lftpvyqfef edlqvasdck nlqiaepqse eqpsstldva lirseiqryl eslpslkgel
      181 tilrsslipg diflhgfttr tggisyiptl sscnlfsssk rrdpqvvvke nlrrlanaag
      241 fnpetfrrvk idhgnavcim gktepdsydg ivtdqkgvti aapgadcipv lfadpvrkac
      301 gaahsgwkgt llgvsmatvn amvseyscnv kdilvvlgps vgpccyklph esakefhrid
      361 pkcvrlfdsa rpyidirrat rvllesggil peniqddsvt dqnqnitfct achpdkfysh
      421 frdgtnfgtq igfislke
//
LOCUS       XP_053907809             438 aa            linear   VRT 09-MAR-2023
DEFINITION  purine nucleoside phosphorylase LACC1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053907809
VERSION     XP_053907809.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051834.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..438
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..438
                     /product="purine nucleoside phosphorylase LACC1 isoform
                     X1"
                     /calculated_mol_wt=48428
     Region          198..434
                     /region_name="Cu-oxidase_4"
                     /note="Multi-copper polyphenol oxidoreductase laccase;
                     pfam02578"
                     /db_xref="CDD:460601"
     CDS             1..438
                     /gene="LACC1"
                     /coded_by="XM_054051834.1:2393..3709"
                     /db_xref="GeneID:104056511"
ORIGIN      
        1 mveavlldlf slpansqtni qgllcntvet iekcssipap fvyvmfcqrq gdernseqes
       61 slpdlrvfqs lkkrlevvha staaaalyti kqrldekdls vikvilptlr kdlmkvyidh
      121 lftpvyqfef edlqvasdck nlqiaepqse eqpsstldva lirseiqryl eslpslkgel
      181 tilrsslipg diflhgfttr tggisyiptl sscnlfsssk rrdpqvvvke nlrrlanaag
      241 fnpetfrrvk idhgnavcim gktepdsydg ivtdqkgvti aapgadcipv lfadpvrkac
      301 gaahsgwkgt llgvsmatvn amvseyscnv kdilvvlgps vgpccyklph esakefhrid
      361 pkcvrlfdsa rpyidirrat rvllesggil peniqddsvt dqnqnitfct achpdkfysh
      421 frdgtnfgtq igfislke
//
LOCUS       XP_053907816             438 aa            linear   VRT 09-MAR-2023
DEFINITION  purine nucleoside phosphorylase LACC1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053907816
VERSION     XP_053907816.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051841.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..438
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..438
                     /product="purine nucleoside phosphorylase LACC1 isoform
                     X1"
                     /calculated_mol_wt=48428
     Region          198..434
                     /region_name="Cu-oxidase_4"
                     /note="Multi-copper polyphenol oxidoreductase laccase;
                     pfam02578"
                     /db_xref="CDD:460601"
     CDS             1..438
                     /gene="LACC1"
                     /coded_by="XM_054051841.1:581..1897"
                     /db_xref="GeneID:104056511"
ORIGIN      
        1 mveavlldlf slpansqtni qgllcntvet iekcssipap fvyvmfcqrq gdernseqes
       61 slpdlrvfqs lkkrlevvha staaaalyti kqrldekdls vikvilptlr kdlmkvyidh
      121 lftpvyqfef edlqvasdck nlqiaepqse eqpsstldva lirseiqryl eslpslkgel
      181 tilrsslipg diflhgfttr tggisyiptl sscnlfsssk rrdpqvvvke nlrrlanaag
      241 fnpetfrrvk idhgnavcim gktepdsydg ivtdqkgvti aapgadcipv lfadpvrkac
      301 gaahsgwkgt llgvsmatvn amvseyscnv kdilvvlgps vgpccyklph esakefhrid
      361 pkcvrlfdsa rpyidirrat rvllesggil peniqddsvt dqnqnitfct achpdkfysh
      421 frdgtnfgtq igfislke
//
LOCUS       XP_053907824             438 aa            linear   VRT 09-MAR-2023
DEFINITION  purine nucleoside phosphorylase LACC1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053907824
VERSION     XP_053907824.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051849.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..438
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..438
                     /product="purine nucleoside phosphorylase LACC1 isoform
                     X1"
                     /calculated_mol_wt=48428
     Region          198..434
                     /region_name="Cu-oxidase_4"
                     /note="Multi-copper polyphenol oxidoreductase laccase;
                     pfam02578"
                     /db_xref="CDD:460601"
     CDS             1..438
                     /gene="LACC1"
                     /coded_by="XM_054051849.1:2229..3545"
                     /db_xref="GeneID:104056511"
ORIGIN      
        1 mveavlldlf slpansqtni qgllcntvet iekcssipap fvyvmfcqrq gdernseqes
       61 slpdlrvfqs lkkrlevvha staaaalyti kqrldekdls vikvilptlr kdlmkvyidh
      121 lftpvyqfef edlqvasdck nlqiaepqse eqpsstldva lirseiqryl eslpslkgel
      181 tilrsslipg diflhgfttr tggisyiptl sscnlfsssk rrdpqvvvke nlrrlanaag
      241 fnpetfrrvk idhgnavcim gktepdsydg ivtdqkgvti aapgadcipv lfadpvrkac
      301 gaahsgwkgt llgvsmatvn amvseyscnv kdilvvlgps vgpccyklph esakefhrid
      361 pkcvrlfdsa rpyidirrat rvllesggil peniqddsvt dqnqnitfct achpdkfysh
      421 frdgtnfgtq igfislke
//
LOCUS       XP_053907831             179 aa            linear   VRT 09-MAR-2023
DEFINITION  purine nucleoside phosphorylase LACC1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053907831
VERSION     XP_053907831.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051856.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..179
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..179
                     /product="purine nucleoside phosphorylase LACC1 isoform
                     X2"
                     /calculated_mol_wt=19338
     Region          <2..175
                     /region_name="Cu-oxidase_4"
                     /note="Multi-copper polyphenol oxidoreductase laccase;
                     pfam02578"
                     /db_xref="CDD:460601"
     CDS             1..179
                     /gene="LACC1"
                     /coded_by="XM_054051856.1:427..966"
                     /db_xref="GeneID:104056511"
ORIGIN      
        1 mgktepdsyd givtdqkgvt iaapgadcip vlfadpvrka cgaahsgwkg tllgvsmatv
       61 namvseyscn vkdilvvlgp svgpccyklp hesakefhri dpkcvrlfds arpyidirra
      121 trvllesggi lpeniqddsv tdqnqnitfc tachpdkfys hfrdgtnfgt qigfislke
//
LOCUS       XP_053907839             228 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128849563 [Cuculus canorus].
ACCESSION   XP_053907839
VERSION     XP_053907839.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051864.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..228
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..228
                     /product="uncharacterized protein LOC128849563"
                     /calculated_mol_wt=23644
     Region          <6..222
                     /region_name="PRK07764"
                     /note="DNA polymerase III subunits gamma and tau;
                     Validated"
                     /db_xref="CDD:236090"
     CDS             1..228
                     /gene="LOC128849563"
                     /coded_by="XM_054051864.1:238..924"
                     /db_xref="GeneID:128849563"
ORIGIN      
        1 mctswgitct frgipaplgt sptppraslp algaappptg alpappgasp tpseaspapl
       61 gaapapprsp ptppghhlhl aghphtfwdi thtswgitwn fwgithtsrn itrtsrditq
      121 tswgstqtsw gctsqaitht sraapaphga sptppwaspa rpgaalqlpr dnicthvdst
      181 yatrgqqpql prqyqhlpga tsappgnstc apqgstsppp eqhpwvll
//
LOCUS       XP_053907853             444 aa            linear   VRT 09-MAR-2023
DEFINITION  Krueppel-like factor 5 [Cuculus canorus].
ACCESSION   XP_053907853
VERSION     XP_053907853.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051878.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..444
                     /product="Krueppel-like factor 5"
                     /calculated_mol_wt=49212
     Region          3..357
                     /region_name="KLF5_N"
                     /note="N-terminal domain of Kruppel-like factor 5;
                     cd21579"
                     /db_xref="CDD:410335"
     Region          346..>423
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          365..384
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(369,371,373,375..376,379..380,383,399,401,405..406,
                     409..410,413,427,429,431,433..434,437..438,441)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          392..414
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          406..431
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          420..442
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          422..442
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..444
                     /gene="KLF5"
                     /coded_by="XM_054051878.1:116..1450"
                     /db_xref="GeneID:104054966"
ORIGIN      
        1 matrvltmsa rlgpvqqpde pvfaqlkpvl gareapifpg edlkqqqqpp pqqqhpgggg
       61 ggggaslpae emvqtrceme kylapqlppv svipehkkyr rdsasvvdqf ftdseglpys
      121 inmnvflpdi shlrtglyks qrpcvthikt epvtifshqs ettapapapt qalpeftsif
      181 sshqapdvnn ifikqelptp dvhlsvtpqq gqlyqllssp dldmpntttq aavmdslnnv
      241 smpsamagln tlssavpqta mkqfqgippc tytmpnqflq qqqatyfpps ppssepgspd
      301 rqaemlqnlt pppsyaatia sklaihnpnl patlpitpqn iqpvrynrrs npdlekrrih
      361 ycdypgctkv ytksshlkah lrthtgekpy kctwegcdwr farsdeltrh yrkhtgakpf
      421 qcavcnrsfs rsdhlalhmk rhqn
//
LOCUS       XP_053907878             189 aa            linear   VRT 09-MAR-2023
DEFINITION  heme-binding protein 1 [Cuculus canorus].
ACCESSION   XP_053907878
VERSION     XP_053907878.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051903.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..189
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..189
                     /product="heme-binding protein 1"
                     /calculated_mol_wt=20708
     Region          13..187
                     /region_name="SOUL"
                     /note="SOUL heme-binding protein; pfam04832"
                     /db_xref="CDD:461449"
     CDS             1..189
                     /gene="HEBP1"
                     /coded_by="XM_054051903.1:201..770"
                     /db_xref="GeneID:104055519"
ORIGIN      
        1 mlgmiknsll stveawpyrv lskgekeqls yeereceggr faavelagkp fdeaskegav
       61 kllkyvggan dqgagmgmta pvsitvfpae dgslqqkvkv slripspfqg nppspsdesi
      121 kieerqgmti ystqfggyak evdyvnyaak lksalgseaa yhkdfylcng ydppmkpygr
      181 rnevwfvke
//
LOCUS       XP_053907887             132 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM107B [Cuculus canorus].
ACCESSION   XP_053907887
VERSION     XP_053907887.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051912.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..132
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..132
                     /product="protein FAM107B"
                     /calculated_mol_wt=15545
     Region          12..121
                     /region_name="DUF1151"
                     /note="Protein of unknown function (DUF1151); pfam06625"
                     /db_xref="CDD:461966"
     CDS             1..132
                     /gene="FAM107B"
                     /coded_by="XM_054051912.1:164..562"
                     /db_xref="GeneID:104066180"
ORIGIN      
        1 maepdyiddd npelirpqkl inpvkssrnh qdlhrellmn qkrglapqnk pelqkvmekr
       61 krdqvikqqk eeeaqkkksd leiellkrqq kleqleleqq kmqeeqenap efvkvkgnlr
      121 rtvqegteap es
//
LOCUS       XP_053907896             132 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM107B [Cuculus canorus].
ACCESSION   XP_053907896
VERSION     XP_053907896.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051921.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..132
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..132
                     /product="protein FAM107B"
                     /calculated_mol_wt=15545
     Region          12..121
                     /region_name="DUF1151"
                     /note="Protein of unknown function (DUF1151); pfam06625"
                     /db_xref="CDD:461966"
     CDS             1..132
                     /gene="FAM107B"
                     /coded_by="XM_054051921.1:252..650"
                     /db_xref="GeneID:104066180"
ORIGIN      
        1 maepdyiddd npelirpqkl inpvkssrnh qdlhrellmn qkrglapqnk pelqkvmekr
       61 krdqvikqqk eeeaqkkksd leiellkrqq kleqleleqq kmqeeqenap efvkvkgnlr
      121 rtvqegteap es
//
LOCUS       XP_053907905             132 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM107B [Cuculus canorus].
ACCESSION   XP_053907905
VERSION     XP_053907905.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051930.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..132
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..132
                     /product="protein FAM107B"
                     /calculated_mol_wt=15545
     Region          12..121
                     /region_name="DUF1151"
                     /note="Protein of unknown function (DUF1151); pfam06625"
                     /db_xref="CDD:461966"
     CDS             1..132
                     /gene="FAM107B"
                     /coded_by="XM_054051930.1:161..559"
                     /db_xref="GeneID:104066180"
ORIGIN      
        1 maepdyiddd npelirpqkl inpvkssrnh qdlhrellmn qkrglapqnk pelqkvmekr
       61 krdqvikqqk eeeaqkkksd leiellkrqq kleqleleqq kmqeeqenap efvkvkgnlr
      121 rtvqegteap es
//
LOCUS       XP_053907914             132 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM107B [Cuculus canorus].
ACCESSION   XP_053907914
VERSION     XP_053907914.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051939.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..132
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..132
                     /product="protein FAM107B"
                     /calculated_mol_wt=15545
     Region          12..121
                     /region_name="DUF1151"
                     /note="Protein of unknown function (DUF1151); pfam06625"
                     /db_xref="CDD:461966"
     CDS             1..132
                     /gene="FAM107B"
                     /coded_by="XM_054051939.1:80..478"
                     /db_xref="GeneID:104066180"
ORIGIN      
        1 maepdyiddd npelirpqkl inpvkssrnh qdlhrellmn qkrglapqnk pelqkvmekr
       61 krdqvikqqk eeeaqkkksd leiellkrqq kleqleleqq kmqeeqenap efvkvkgnlr
      121 rtvqegteap es
//
LOCUS       XP_009554949             571 aa            linear   VRT 09-MAR-2023
DEFINITION  heat shock 70 kDa protein 12B-like isoform X1 [Cuculus canorus].
ACCESSION   XP_009554949
VERSION     XP_009554949.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556654.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..571
                     /product="heat shock 70 kDa protein 12B-like isoform X1"
                     /calculated_mol_wt=64692
     Region          4..419
                     /region_name="ASKHA_NBD_HSP70_HSPA12"
                     /note="nucleotide-binding domain (NBD) of heat shock 70
                     kDa proteins HSPA12A, HSPA12B and similar proteins;
                     cd10229"
                     /db_xref="CDD:466827"
     CDS             1..571
                     /gene="LOC104055525"
                     /coded_by="XM_009556654.2:118..1833"
                     /db_xref="GeneID:104055525"
ORIGIN      
        1 msifivaidf gtsysgycfs lasaakqirq vywgvehglk tpktptcilf nqkkefkkfg
       61 ydavmkyksl psseadewyf fqnfkmklyn tkvtsdmele asngktlpal tvfseslrym
      121 kehalntiqe asfqtvynre eitwvltvpa iwnaaarqfm rlaateagli pdmfseklii
      181 alepeaaslw ckqlpkegfm vdssdkkkfq dspgiqyivv dcgggtidit vheirenryl
      241 kelhkaaggg wggnrvdenf tdflkeifnd gvwdeyvkcy paelqrmlyd fslqkcsssr
      301 envyihcyyn ltklaeckks ishffknveg avwcngtmmi tyeklksffd fsikntvqtl
      361 reilkkptmt kvqyillvgg fassiilrda iseafskkyh ilcpmdaqva ivkgavlfgv
      421 sphivasrvs artygleinq kfdpavhdvs klrvsktddy vyctgifkkl vgieqsvgin
      481 evahydfhpt esdqtaasfc fyctekkdaq yvdeegmell gscvvpmpdt tlgknrqlkl
      541 hikfgliefk atctdvtsnq srtimidflt v
//
LOCUS       XP_053907936             475 aa            linear   VRT 09-MAR-2023
DEFINITION  heat shock 70 kDa protein 12A-like isoform X2 [Cuculus canorus].
ACCESSION   XP_053907936
VERSION     XP_053907936.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051961.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..475
                     /product="heat shock 70 kDa protein 12A-like isoform X2"
                     /calculated_mol_wt=53569
     Region          <1..323
                     /region_name="ASKHA_NBD_HSP70_HSPA12"
                     /note="nucleotide-binding domain (NBD) of heat shock 70
                     kDa proteins HSPA12A, HSPA12B and similar proteins;
                     cd10229"
                     /db_xref="CDD:466827"
     CDS             1..475
                     /gene="LOC104055525"
                     /coded_by="XM_054051961.1:907..2334"
                     /db_xref="GeneID:104055525"
ORIGIN      
        1 meleasngkt lpaltvfses lrymkehaln tiqeasfqtv ynreeitwvl tvpaiwnaaa
       61 rqfmrlaate aglipdmfse kliialepea aslwckqlpk egfmvdssdk kkfqdspgiq
      121 yivvdcgggt iditvheire nrylkelhka agggwggnrv denftdflke ifndgvwdey
      181 vkcypaelqr mlydfslqkc sssrenvyih cyynltklae ckksishffk nvegavwcng
      241 tmmityeklk sffdfsiknt vqtlreilkk ptmtkvqyil lvggfassii lrdaiseafs
      301 kkyhilcpmd aqvaivkgav lfgvsphiva srvsartygl einqkfdpav hdvsklrvsk
      361 tddyvyctgi fkklvgieqs vginevahyd fhptesdqta asfcfyctek kdaqyvdeeg
      421 mellgscvvp mpdttlgknr qlklhikfgl iefkatctdv tsnqsrtimi dfltv
//
LOCUS       XP_053907942             475 aa            linear   VRT 09-MAR-2023
DEFINITION  heat shock 70 kDa protein 12A-like isoform X2 [Cuculus canorus].
ACCESSION   XP_053907942
VERSION     XP_053907942.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051967.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..475
                     /product="heat shock 70 kDa protein 12A-like isoform X2"
                     /calculated_mol_wt=53569
     Region          <1..323
                     /region_name="ASKHA_NBD_HSP70_HSPA12"
                     /note="nucleotide-binding domain (NBD) of heat shock 70
                     kDa proteins HSPA12A, HSPA12B and similar proteins;
                     cd10229"
                     /db_xref="CDD:466827"
     CDS             1..475
                     /gene="LOC104055525"
                     /coded_by="XM_054051967.1:443..1870"
                     /db_xref="GeneID:104055525"
ORIGIN      
        1 meleasngkt lpaltvfses lrymkehaln tiqeasfqtv ynreeitwvl tvpaiwnaaa
       61 rqfmrlaate aglipdmfse kliialepea aslwckqlpk egfmvdssdk kkfqdspgiq
      121 yivvdcgggt iditvheire nrylkelhka agggwggnrv denftdflke ifndgvwdey
      181 vkcypaelqr mlydfslqkc sssrenvyih cyynltklae ckksishffk nvegavwcng
      241 tmmityeklk sffdfsiknt vqtlreilkk ptmtkvqyil lvggfassii lrdaiseafs
      301 kkyhilcpmd aqvaivkgav lfgvsphiva srvsartygl einqkfdpav hdvsklrvsk
      361 tddyvyctgi fkklvgieqs vginevahyd fhptesdqta asfcfyctek kdaqyvdeeg
      421 mellgscvvp mpdttlgknr qlklhikfgl iefkatctdv tsnqsrtimi dfltv
//
LOCUS       XP_053907948             475 aa            linear   VRT 09-MAR-2023
DEFINITION  heat shock 70 kDa protein 12A-like isoform X2 [Cuculus canorus].
ACCESSION   XP_053907948
VERSION     XP_053907948.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051973.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..475
                     /product="heat shock 70 kDa protein 12A-like isoform X2"
                     /calculated_mol_wt=53569
     Region          <1..323
                     /region_name="ASKHA_NBD_HSP70_HSPA12"
                     /note="nucleotide-binding domain (NBD) of heat shock 70
                     kDa proteins HSPA12A, HSPA12B and similar proteins;
                     cd10229"
                     /db_xref="CDD:466827"
     CDS             1..475
                     /gene="LOC104055525"
                     /coded_by="XM_054051973.1:374..1801"
                     /db_xref="GeneID:104055525"
ORIGIN      
        1 meleasngkt lpaltvfses lrymkehaln tiqeasfqtv ynreeitwvl tvpaiwnaaa
       61 rqfmrlaate aglipdmfse kliialepea aslwckqlpk egfmvdssdk kkfqdspgiq
      121 yivvdcgggt iditvheire nrylkelhka agggwggnrv denftdflke ifndgvwdey
      181 vkcypaelqr mlydfslqkc sssrenvyih cyynltklae ckksishffk nvegavwcng
      241 tmmityeklk sffdfsiknt vqtlreilkk ptmtkvqyil lvggfassii lrdaiseafs
      301 kkyhilcpmd aqvaivkgav lfgvsphiva srvsartygl einqkfdpav hdvsklrvsk
      361 tddyvyctgi fkklvgieqs vginevahyd fhptesdqta asfcfyctek kdaqyvdeeg
      421 mellgscvvp mpdttlgknr qlklhikfgl iefkatctdv tsnqsrtimi dfltv
//
LOCUS       XP_053907959             345 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128849599 [Cuculus canorus].
ACCESSION   XP_053907959
VERSION     XP_053907959.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051984.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..345
                     /product="uncharacterized protein LOC128849599"
                     /calculated_mol_wt=40709
     Region          191..341
                     /region_name="MIEAP"
                     /note="Mitochondria-eating protein; pfam16026"
                     /db_xref="CDD:464982"
     CDS             1..345
                     /gene="LOC128849599"
                     /coded_by="XM_054051984.1:152..1189"
                     /db_xref="GeneID:128849599"
ORIGIN      
        1 mgtpefssfs rtgmfeelck csretpaees retsdtsqqp sdredknsel etshhelrkr
       61 vvqleeennk qrvwaesvet rlqalletsq rqytatscss npyphyqegh wrqafpgyvt
      121 qkefqekeee nkklkarike learneells kamgmhkhse nvndpwrlsa vlqmyemfrl
      181 rdwekfrsty sltyksgsii ikklfdacee diqqrkrnlf evlgippyne tvtksnqgmm
      241 qeirnilryl yyqgqtefys kivmqtgigp ktpiqrefte qcckiyclll lqdpplkavw
      301 nsgeikyleh vdkkgyeywk kptflwpiik cgeqvvvkgv vwdek
//
LOCUS       XP_053907970             189 aa            linear   VRT 09-MAR-2023
DEFINITION  vitelline membrane outer layer protein 1 [Cuculus canorus].
ACCESSION   XP_053907970
VERSION     XP_053907970.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054051995.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..189
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..189
                     /product="vitelline membrane outer layer protein 1"
                     /calculated_mol_wt=20429
     Region          29..188
                     /region_name="VOMI"
                     /note="Vitelline membrane outer layer protein I (VOMI);
                     pfam03762"
                     /db_xref="CDD:427492"
     Site            order(37,59,69..70,115,122..123,169,176..177)
                     /site_type="other"
                     /note="putative carbohydrate binding site [chemical
                     binding]"
                     /db_xref="CDD:238135"
     CDS             1..189
                     /gene="LOC104055360"
                     /coded_by="XM_054051995.1:16..585"
                     /db_xref="GeneID:104055360"
ORIGIN      
        1 mqllilailc slsscclqgt garncesvlt vpnggpwgfw gqeqfcpsgy aygfelkved
       61 yrglqtfadn talngirllc tdgtviessi gqwgnwtkaq vcpgkelvsf slrvegwqhl
      121 lddtaannvk ftcsdgtvle gwgisrghfg pwsgkcnsga icglqtkvek pqgtwddtal
      181 ndmrvfcce
//
LOCUS       XP_009566108             669 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA polymerase II-associated protein 3 [Cuculus canorus].
ACCESSION   XP_009566108
VERSION     XP_009566108.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009567813.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566108.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..669
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..669
                     /product="RNA polymerase II-associated protein 3"
                     /calculated_mol_wt=76377
     Region          90..231
                     /region_name="TadD"
                     /note="Flp pilus assembly protein TadD, contains TPR
                     repeats [Intracellular trafficking, secretion, and
                     vesicular transport, Extracellular structures]; COG5010"
                     /db_xref="CDD:444034"
     Region          133..161
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(134,137..138,141..142,144,168,171..172,175..176,
                     178..179,202,205..206,209..210,213)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          163..405
                     /region_name="TPR"
                     /note="Tetratricopeptide (TPR) repeat [General function
                     prediction only]; COG0457"
                     /db_xref="CDD:440225"
     Region          166..196
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          201..229
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          284..312
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(285,288..289,292..293,295,319,322..323,326..327,
                     329..330,353,356..357,360..361,364)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          317..347
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          352..380
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          547..637
                     /region_name="RPAP3_C"
                     /note="Potential Monad-binding region of RPAP3; pfam13877"
                     /db_xref="CDD:464012"
     CDS             1..669
                     /gene="RPAP3"
                     /coded_by="XM_009567813.2:161..2170"
                     /db_xref="GeneID:104065349"
ORIGIN      
        1 msapnkslel qlqmkqnaee lqdfmreles wekdikevds elrkrsgvpe enlppirnka
       61 fkkkkksksk vpskitseen kknkiksydy eawgkldvdk ileeldkeds thdsvspesd
      121 seedgirida ekalaekekg nhyfkqgnfd eaikcytrgm hsdpynpvlp tnrasafyrm
      181 kkfsvaesdc nlalaldkny tkaysrrgaa rfalknlqga kedyekvlel dannfeakne
      241 lkkinqalss kesseqkefe vagrpeltdk ekkciedqql kqkaiiekdl gngyfkegky
      301 eaaiecytrg iaadgtnall panramaylk iekyeeaedd ctqallldas yskafarrga
      361 arvalgklke avqdfeavlk lepgnkqain eltkikkela ekeqethqey ptvlikewei
      421 knivkvidnp lhlkstkplq ripieeiddd tpnsdmpstt slvnnwtist rvettenlgl
      481 ddqlatmdip kakhlkieei sdtlpvqlsd smkgtssvlh pslpvnqqre ketkrsfqsa
      541 tpvppvpans fqlesdfrkf kdcpenmyly lkqiepslyp klfqksldpd lfnqilkilh
      601 dfyiekeeps lileilqkls elkrfdmavm fmsglekkit qvlfnhvnqm glkdtsvkel
      661 ekkygilsq
//
LOCUS       XP_053907996            1718 aa            linear   VRT 09-MAR-2023
DEFINITION  intersectin-1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053907996
VERSION     XP_053907996.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052021.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1718
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1718
                     /product="intersectin-1 isoform X1"
                     /calculated_mol_wt=195024
     Region          14..106
                     /region_name="EH"
                     /note="Eps15 homology domain; smart00027"
                     /db_xref="CDD:197477"
     Region          <131..201
                     /region_name="PLN02983"
                     /note="biotin carboxyl carrier protein of acetyl-CoA
                     carboxylase"
                     /db_xref="CDD:215533"
     Region          213..308
                     /region_name="EH"
                     /note="Eps15 homology domain; smart00027"
                     /db_xref="CDD:197477"
     Region          <362..>672
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          642..>736
                     /region_name="tolA"
                     /note="cell envelope integrity inner membrane protein
                     TolA; Provisional; PRK09510"
                     /db_xref="CDD:236545"
     Region          742..801
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(747,749,752,756,781..782,795,797..798)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212920"
     Region          801..914
                     /region_name="INTAP"
                     /note="Intersectin and clathrin adaptor AP2 binding
                     region; pfam16617"
                     /db_xref="CDD:435467"
     Region          914..965
                     /region_name="SH3_Intersectin1_2"
                     /note="Second Src homology 3 domain (or SH3B) of
                     Intersectin-1; cd11989"
                     /db_xref="CDD:212922"
     Site            order(919,921,924,928,945..946,959,961..962)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212922"
     Region          1003..1054
                     /region_name="SH3_Intersectin1_3"
                     /note="Third Src homology 3 domain (or SH3C) of
                     Intersectin-1; cd11991"
                     /db_xref="CDD:212924"
     Site            order(1008,1010,1013,1017,1034..1035,1048,1050..1051)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212924"
     Region          1071..1135
                     /region_name="SH3_Intersectin1_4"
                     /note="Fourth Src homology 3 domain (or SH3D) of
                     Intersectin-1; cd11993"
                     /db_xref="CDD:212926"
     Site            order(1080,1082,1085,1089,1107..1108,1126,1128..1129)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212926"
     Region          1155..1208
                     /region_name="SH3_Intersectin1_5"
                     /note="Fifth Src homology 3 domain (or SH3E) of
                     Intersectin-1; cd11995"
                     /db_xref="CDD:212928"
     Site            order(1161,1163,1166,1170,1188..1189,1202,1204..1205)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212928"
     Region          1235..1418
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(1241,1245,1341,1369..1370,1373..1374,1376..1377,
                     1380..1381,1384..1385,1388,1414,1418)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          1437..1579
                     /region_name="PH_13"
                     /note="Pleckstrin homology domain; pfam16652"
                     /db_xref="CDD:465218"
     Region          1579..1713
                     /region_name="C2_Intersectin"
                     /note="C2 domain present in Intersectin; cd08375"
                     /db_xref="CDD:176021"
     Site            order(1615,1662,1664,1670)
                     /site_type="other"
                     /note="putative Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176021"
     CDS             1..1718
                     /gene="ITSN1"
                     /coded_by="XM_054052021.1:183..5339"
                     /db_xref="GeneID:104064753"
ORIGIN      
        1 maqfptpfgg nldiwaitve erakhdqqfh slkpasgfit gdqarnfffq sglpqpvlaq
       61 iwaladmnnd grmdqlefsi amkliklklq gyqlpsalpp vmkqppialp sapgfgiggi
      121 asmpslttva pvpmasipvv gmspplvssv paaavpplan gapaviqplp afahpatlpk
      181 sssfsrsgpg sqlnaklqka qsfdvasvpp vaewavpqss rlkyrqlfns hdktmsghlt
      241 gpqartilmq sslpqaqlat iwnlsdidqd gkltaeefil amhlidvams gqplppvlpp
      301 eyippsfrrv rsgsgipsas svsvdqrlpe epaleeeqqq lekklpvtfe dkkrenferg
      361 nlelekrrqa lleqqrkeqe rlaqleraeq erkererqeq erkrqlelek qlekqreler
      421 qreeerrkei erreaakrel erqrqlewer nrrqellnqr nkeqedivvl kakkktlefe
      481 lealndkknq legklqdirc rlstqrqeie stnksrelri aeithlqqql qesqqmlgrl
      541 ipekqllndq lkqvqqnslh rdslltikra leakelarqq lrdqldevek etrsklqeid
      601 ifnnqlkdlr eihnkqqlqk qksmeaerlk qkeqerktve lekqkeaqrr iqerdkqrld
      661 qvqpeeelqr qkkiqedekq kreeiarkke sedkgkqemq eklsklfqph qepvkpavqa
      721 pwsnaekapl tisaqedvki vyyralypfe srshdeisiq pgdivmvkre wvdesqtgep
      781 gwlggelkgk tgwfpanyae kipenevpas vkpaveataa pkvsvhettt slgtpastec
      841 atiannwadf sstwptnsse kpetdnwdaw aaqpsltvps agqlrqrsaf tpatvtgssp
      901 spvlgqgekv eglqaqalyp wrakkdnhln fnkndiitvl eqqdmwwfge vqgqkgwfpk
      961 syvklisgpi rkstsmdsgs sespaslkrv aspatkatms geeyiamyty esseqgdltf
     1021 qqgdmilvtk kdgdwwtgtl gdksgvfpsn yvrlkdseas gaagktgslg kkpeiaqvia
     1081 sytatgpeql tlapgqlili rkknpggwwe gelqargkkr qigwfpanyv kllspgtskt
     1141 tptelpksta lpsvcqvigm ydytaqndde lafnkgqiin vlnkedpdww kgevngqvgl
     1201 fpsnyvkltt dmdpsqqwca dlhlldmltp terkrqgyih elivteenyv ndlqlvteif
     1261 qkplmesell tekevamifv nwkelimcni kllkalrvrk kmsgekmpvk migdiltaql
     1321 phmqpyirfc scqlngaali qqktdevpef kefvkrlamd prckgmplss fllkpmqrvt
     1381 rypliiknii entpenhpdh shlkhaleka eelcsqvneg vrekensdrl ewiqahvqce
     1441 glseqlvfns vtnclgprkf lhsgklykak snkelygflf ndfllltqii kplgssgtdk
     1501 vfspksnlqy kmyktpifln evlvklptdp sgdepifhis hidrvytlra esinertawv
     1561 qkikaasely ietekkkrek aylvrsqrat gigrlmvniv egielkpcrs hgksnpycev
     1621 tmgsqchitk tiqdtlnpkw nsncqffikd leqdvlcitv ferdqfspdd flgrteirva
     1681 dikkdqgskg pvtkclllhe vptgeivvrl dlqlfdep
//
LOCUS       XP_053908004            1718 aa            linear   VRT 09-MAR-2023
DEFINITION  intersectin-1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053908004
VERSION     XP_053908004.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052029.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1718
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1718
                     /product="intersectin-1 isoform X1"
                     /calculated_mol_wt=195024
     Region          14..106
                     /region_name="EH"
                     /note="Eps15 homology domain; smart00027"
                     /db_xref="CDD:197477"
     Region          <131..201
                     /region_name="PLN02983"
                     /note="biotin carboxyl carrier protein of acetyl-CoA
                     carboxylase"
                     /db_xref="CDD:215533"
     Region          213..308
                     /region_name="EH"
                     /note="Eps15 homology domain; smart00027"
                     /db_xref="CDD:197477"
     Region          <362..>672
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          642..>736
                     /region_name="tolA"
                     /note="cell envelope integrity inner membrane protein
                     TolA; Provisional; PRK09510"
                     /db_xref="CDD:236545"
     Region          742..801
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(747,749,752,756,781..782,795,797..798)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212920"
     Region          801..914
                     /region_name="INTAP"
                     /note="Intersectin and clathrin adaptor AP2 binding
                     region; pfam16617"
                     /db_xref="CDD:435467"
     Region          914..965
                     /region_name="SH3_Intersectin1_2"
                     /note="Second Src homology 3 domain (or SH3B) of
                     Intersectin-1; cd11989"
                     /db_xref="CDD:212922"
     Site            order(919,921,924,928,945..946,959,961..962)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212922"
     Region          1003..1054
                     /region_name="SH3_Intersectin1_3"
                     /note="Third Src homology 3 domain (or SH3C) of
                     Intersectin-1; cd11991"
                     /db_xref="CDD:212924"
     Site            order(1008,1010,1013,1017,1034..1035,1048,1050..1051)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212924"
     Region          1071..1135
                     /region_name="SH3_Intersectin1_4"
                     /note="Fourth Src homology 3 domain (or SH3D) of
                     Intersectin-1; cd11993"
                     /db_xref="CDD:212926"
     Site            order(1080,1082,1085,1089,1107..1108,1126,1128..1129)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212926"
     Region          1155..1208
                     /region_name="SH3_Intersectin1_5"
                     /note="Fifth Src homology 3 domain (or SH3E) of
                     Intersectin-1; cd11995"
                     /db_xref="CDD:212928"
     Site            order(1161,1163,1166,1170,1188..1189,1202,1204..1205)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212928"
     Region          1235..1418
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(1241,1245,1341,1369..1370,1373..1374,1376..1377,
                     1380..1381,1384..1385,1388,1414,1418)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          1437..1579
                     /region_name="PH_13"
                     /note="Pleckstrin homology domain; pfam16652"
                     /db_xref="CDD:465218"
     Region          1579..1713
                     /region_name="C2_Intersectin"
                     /note="C2 domain present in Intersectin; cd08375"
                     /db_xref="CDD:176021"
     Site            order(1615,1662,1664,1670)
                     /site_type="other"
                     /note="putative Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176021"
     CDS             1..1718
                     /gene="ITSN1"
                     /coded_by="XM_054052029.1:49..5205"
                     /db_xref="GeneID:104064753"
ORIGIN      
        1 maqfptpfgg nldiwaitve erakhdqqfh slkpasgfit gdqarnfffq sglpqpvlaq
       61 iwaladmnnd grmdqlefsi amkliklklq gyqlpsalpp vmkqppialp sapgfgiggi
      121 asmpslttva pvpmasipvv gmspplvssv paaavpplan gapaviqplp afahpatlpk
      181 sssfsrsgpg sqlnaklqka qsfdvasvpp vaewavpqss rlkyrqlfns hdktmsghlt
      241 gpqartilmq sslpqaqlat iwnlsdidqd gkltaeefil amhlidvams gqplppvlpp
      301 eyippsfrrv rsgsgipsas svsvdqrlpe epaleeeqqq lekklpvtfe dkkrenferg
      361 nlelekrrqa lleqqrkeqe rlaqleraeq erkererqeq erkrqlelek qlekqreler
      421 qreeerrkei erreaakrel erqrqlewer nrrqellnqr nkeqedivvl kakkktlefe
      481 lealndkknq legklqdirc rlstqrqeie stnksrelri aeithlqqql qesqqmlgrl
      541 ipekqllndq lkqvqqnslh rdslltikra leakelarqq lrdqldevek etrsklqeid
      601 ifnnqlkdlr eihnkqqlqk qksmeaerlk qkeqerktve lekqkeaqrr iqerdkqrld
      661 qvqpeeelqr qkkiqedekq kreeiarkke sedkgkqemq eklsklfqph qepvkpavqa
      721 pwsnaekapl tisaqedvki vyyralypfe srshdeisiq pgdivmvkre wvdesqtgep
      781 gwlggelkgk tgwfpanyae kipenevpas vkpaveataa pkvsvhettt slgtpastec
      841 atiannwadf sstwptnsse kpetdnwdaw aaqpsltvps agqlrqrsaf tpatvtgssp
      901 spvlgqgekv eglqaqalyp wrakkdnhln fnkndiitvl eqqdmwwfge vqgqkgwfpk
      961 syvklisgpi rkstsmdsgs sespaslkrv aspatkatms geeyiamyty esseqgdltf
     1021 qqgdmilvtk kdgdwwtgtl gdksgvfpsn yvrlkdseas gaagktgslg kkpeiaqvia
     1081 sytatgpeql tlapgqlili rkknpggwwe gelqargkkr qigwfpanyv kllspgtskt
     1141 tptelpksta lpsvcqvigm ydytaqndde lafnkgqiin vlnkedpdww kgevngqvgl
     1201 fpsnyvkltt dmdpsqqwca dlhlldmltp terkrqgyih elivteenyv ndlqlvteif
     1261 qkplmesell tekevamifv nwkelimcni kllkalrvrk kmsgekmpvk migdiltaql
     1321 phmqpyirfc scqlngaali qqktdevpef kefvkrlamd prckgmplss fllkpmqrvt
     1381 rypliiknii entpenhpdh shlkhaleka eelcsqvneg vrekensdrl ewiqahvqce
     1441 glseqlvfns vtnclgprkf lhsgklykak snkelygflf ndfllltqii kplgssgtdk
     1501 vfspksnlqy kmyktpifln evlvklptdp sgdepifhis hidrvytlra esinertawv
     1561 qkikaasely ietekkkrek aylvrsqrat gigrlmvniv egielkpcrs hgksnpycev
     1621 tmgsqchitk tiqdtlnpkw nsncqffikd leqdvlcitv ferdqfspdd flgrteirva
     1681 dikkdqgskg pvtkclllhe vptgeivvrl dlqlfdep
//
LOCUS       XP_053908012            1713 aa            linear   VRT 09-MAR-2023
DEFINITION  intersectin-1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053908012
VERSION     XP_053908012.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052037.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1713
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1713
                     /product="intersectin-1 isoform X2"
                     /calculated_mol_wt=194326
     Region          14..106
                     /region_name="EH"
                     /note="Eps15 homology domain; smart00027"
                     /db_xref="CDD:197477"
     Region          <131..201
                     /region_name="PLN02983"
                     /note="biotin carboxyl carrier protein of acetyl-CoA
                     carboxylase"
                     /db_xref="CDD:215533"
     Region          213..308
                     /region_name="EH"
                     /note="Eps15 homology domain; smart00027"
                     /db_xref="CDD:197477"
     Region          <362..>672
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          642..>736
                     /region_name="tolA"
                     /note="cell envelope integrity inner membrane protein
                     TolA; Provisional; PRK09510"
                     /db_xref="CDD:236545"
     Region          742..796
                     /region_name="SH3_Intersectin1_1"
                     /note="First Src homology 3 domain (or SH3A) of
                     Intersectin-1; cd11987"
                     /db_xref="CDD:212920"
     Site            order(747,749,752,756,776..777,790,792..793)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212920"
     Region          796..909
                     /region_name="INTAP"
                     /note="Intersectin and clathrin adaptor AP2 binding
                     region; pfam16617"
                     /db_xref="CDD:435467"
     Region          909..960
                     /region_name="SH3_Intersectin1_2"
                     /note="Second Src homology 3 domain (or SH3B) of
                     Intersectin-1; cd11989"
                     /db_xref="CDD:212922"
     Site            order(914,916,919,923,940..941,954,956..957)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212922"
     Region          998..1049
                     /region_name="SH3_Intersectin1_3"
                     /note="Third Src homology 3 domain (or SH3C) of
                     Intersectin-1; cd11991"
                     /db_xref="CDD:212924"
     Site            order(1003,1005,1008,1012,1029..1030,1043,1045..1046)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212924"
     Region          1066..1130
                     /region_name="SH3_Intersectin1_4"
                     /note="Fourth Src homology 3 domain (or SH3D) of
                     Intersectin-1; cd11993"
                     /db_xref="CDD:212926"
     Site            order(1075,1077,1080,1084,1102..1103,1121,1123..1124)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212926"
     Region          1150..1203
                     /region_name="SH3_Intersectin1_5"
                     /note="Fifth Src homology 3 domain (or SH3E) of
                     Intersectin-1; cd11995"
                     /db_xref="CDD:212928"
     Site            order(1156,1158,1161,1165,1183..1184,1197,1199..1200)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212928"
     Region          1230..1413
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(1236,1240,1336,1364..1365,1368..1369,1371..1372,
                     1375..1376,1379..1380,1383,1409,1413)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          1432..1574
                     /region_name="PH_13"
                     /note="Pleckstrin homology domain; pfam16652"
                     /db_xref="CDD:465218"
     Region          1574..1708
                     /region_name="C2_Intersectin"
                     /note="C2 domain present in Intersectin; cd08375"
                     /db_xref="CDD:176021"
     Site            order(1610,1657,1659,1665)
                     /site_type="other"
                     /note="putative Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176021"
     CDS             1..1713
                     /gene="ITSN1"
                     /coded_by="XM_054052037.1:183..5324"
                     /db_xref="GeneID:104064753"
ORIGIN      
        1 maqfptpfgg nldiwaitve erakhdqqfh slkpasgfit gdqarnfffq sglpqpvlaq
       61 iwaladmnnd grmdqlefsi amkliklklq gyqlpsalpp vmkqppialp sapgfgiggi
      121 asmpslttva pvpmasipvv gmspplvssv paaavpplan gapaviqplp afahpatlpk
      181 sssfsrsgpg sqlnaklqka qsfdvasvpp vaewavpqss rlkyrqlfns hdktmsghlt
      241 gpqartilmq sslpqaqlat iwnlsdidqd gkltaeefil amhlidvams gqplppvlpp
      301 eyippsfrrv rsgsgipsas svsvdqrlpe epaleeeqqq lekklpvtfe dkkrenferg
      361 nlelekrrqa lleqqrkeqe rlaqleraeq erkererqeq erkrqlelek qlekqreler
      421 qreeerrkei erreaakrel erqrqlewer nrrqellnqr nkeqedivvl kakkktlefe
      481 lealndkknq legklqdirc rlstqrqeie stnksrelri aeithlqqql qesqqmlgrl
      541 ipekqllndq lkqvqqnslh rdslltikra leakelarqq lrdqldevek etrsklqeid
      601 ifnnqlkdlr eihnkqqlqk qksmeaerlk qkeqerktve lekqkeaqrr iqerdkqrld
      661 qvqpeeelqr qkkiqedekq kreeiarkke sedkgkqemq eklsklfqph qepvkpavqa
      721 pwsnaekapl tisaqedvki vyyralypfe srshdeisiq pgdivmvdes qtgepgwlgg
      781 elkgktgwfp anyaekipen evpasvkpav eataapkvsv hetttslgtp astecatian
      841 nwadfsstwp tnssekpetd nwdawaaqps ltvpsagqlr qrsaftpatv tgsspspvlg
      901 qgekveglqa qalypwrakk dnhlnfnknd iitvleqqdm wwfgevqgqk gwfpksyvkl
      961 isgpirksts mdsgssespa slkrvaspat katmsgeeyi amytyesseq gdltfqqgdm
     1021 ilvtkkdgdw wtgtlgdksg vfpsnyvrlk dseasgaagk tgslgkkpei aqviasytat
     1081 gpeqltlapg qlilirkknp ggwwegelqa rgkkrqigwf panyvkllsp gtskttptel
     1141 pkstalpsvc qvigmydyta qnddelafnk gqiinvlnke dpdwwkgevn gqvglfpsny
     1201 vklttdmdps qqwcadlhll dmltpterkr qgyihelivt eenyvndlql vteifqkplm
     1261 eselltekev amifvnwkel imcnikllka lrvrkkmsge kmpvkmigdi ltaqlphmqp
     1321 yirfcscqln gaaliqqktd evpefkefvk rlamdprckg mplssfllkp mqrvtrypli
     1381 ikniientpe nhpdhshlkh alekaeelcs qvnegvreke nsdrlewiqa hvqceglseq
     1441 lvfnsvtncl gprkflhsgk lykaksnkel ygflfndfll ltqiikplgs sgtdkvfspk
     1501 snlqykmykt piflnevlvk lptdpsgdep ifhishidrv ytlraesine rtawvqkika
     1561 aselyietek kkrekaylvr sqratgigrl mvnivegiel kpcrshgksn pycevtmgsq
     1621 chitktiqdt lnpkwnsncq ffikdleqdv lcitvferdq fspddflgrt eirvadikkd
     1681 qgskgpvtkc lllhevptge ivvrldlqlf dep
//
LOCUS       XP_053908014            1658 aa            linear   VRT 09-MAR-2023
DEFINITION  intersectin-1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053908014
VERSION     XP_053908014.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052039.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1658
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1658
                     /product="intersectin-1 isoform X3"
                     /calculated_mol_wt=189352
     Region          14..106
                     /region_name="EH"
                     /note="Eps15 homology domain; smart00027"
                     /db_xref="CDD:197477"
     Region          153..248
                     /region_name="EH"
                     /note="Eps15 homology domain; smart00027"
                     /db_xref="CDD:197477"
     Region          <302..>612
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          582..>676
                     /region_name="tolA"
                     /note="cell envelope integrity inner membrane protein
                     TolA; Provisional; PRK09510"
                     /db_xref="CDD:236545"
     Region          682..741
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(687,689,692,696,721..722,735,737..738)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212920"
     Region          741..854
                     /region_name="INTAP"
                     /note="Intersectin and clathrin adaptor AP2 binding
                     region; pfam16617"
                     /db_xref="CDD:435467"
     Region          854..905
                     /region_name="SH3_Intersectin1_2"
                     /note="Second Src homology 3 domain (or SH3B) of
                     Intersectin-1; cd11989"
                     /db_xref="CDD:212922"
     Site            order(859,861,864,868,885..886,899,901..902)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212922"
     Region          943..994
                     /region_name="SH3_Intersectin1_3"
                     /note="Third Src homology 3 domain (or SH3C) of
                     Intersectin-1; cd11991"
                     /db_xref="CDD:212924"
     Site            order(948,950,953,957,974..975,988,990..991)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212924"
     Region          1011..1075
                     /region_name="SH3_Intersectin1_4"
                     /note="Fourth Src homology 3 domain (or SH3D) of
                     Intersectin-1; cd11993"
                     /db_xref="CDD:212926"
     Site            order(1020,1022,1025,1029,1047..1048,1066,1068..1069)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212926"
     Region          1095..1148
                     /region_name="SH3_Intersectin1_5"
                     /note="Fifth Src homology 3 domain (or SH3E) of
                     Intersectin-1; cd11995"
                     /db_xref="CDD:212928"
     Site            order(1101,1103,1106,1110,1128..1129,1142,1144..1145)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212928"
     Region          1175..1358
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(1181,1185,1281,1309..1310,1313..1314,1316..1317,
                     1320..1321,1324..1325,1328,1354,1358)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          1377..1519
                     /region_name="PH_13"
                     /note="Pleckstrin homology domain; pfam16652"
                     /db_xref="CDD:465218"
     Region          1519..1653
                     /region_name="C2_Intersectin"
                     /note="C2 domain present in Intersectin; cd08375"
                     /db_xref="CDD:176021"
     Site            order(1555,1602,1604,1610)
                     /site_type="other"
                     /note="putative Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176021"
     CDS             1..1658
                     /gene="ITSN1"
                     /coded_by="XM_054052039.1:183..5159"
                     /db_xref="GeneID:104064753"
ORIGIN      
        1 maqfptpfgg nldiwaitve erakhdqqfh slkpasgfit gdqarnfffq sglpqpvlaq
       61 iwaladmnnd grmdqlefsi amkliklklq gyqlpsalpp vmkqppialp sapgfatlpk
      121 sssfsrsgpg sqlnaklqka qsfdvasvpp vaewavpqss rlkyrqlfns hdktmsghlt
      181 gpqartilmq sslpqaqlat iwnlsdidqd gkltaeefil amhlidvams gqplppvlpp
      241 eyippsfrrv rsgsgipsas svsvdqrlpe epaleeeqqq lekklpvtfe dkkrenferg
      301 nlelekrrqa lleqqrkeqe rlaqleraeq erkererqeq erkrqlelek qlekqreler
      361 qreeerrkei erreaakrel erqrqlewer nrrqellnqr nkeqedivvl kakkktlefe
      421 lealndkknq legklqdirc rlstqrqeie stnksrelri aeithlqqql qesqqmlgrl
      481 ipekqllndq lkqvqqnslh rdslltikra leakelarqq lrdqldevek etrsklqeid
      541 ifnnqlkdlr eihnkqqlqk qksmeaerlk qkeqerktve lekqkeaqrr iqerdkqrld
      601 qvqpeeelqr qkkiqedekq kreeiarkke sedkgkqemq eklsklfqph qepvkpavqa
      661 pwsnaekapl tisaqedvki vyyralypfe srshdeisiq pgdivmvkre wvdesqtgep
      721 gwlggelkgk tgwfpanyae kipenevpas vkpaveataa pkvsvhettt slgtpastec
      781 atiannwadf sstwptnsse kpetdnwdaw aaqpsltvps agqlrqrsaf tpatvtgssp
      841 spvlgqgekv eglqaqalyp wrakkdnhln fnkndiitvl eqqdmwwfge vqgqkgwfpk
      901 syvklisgpi rkstsmdsgs sespaslkrv aspatkatms geeyiamyty esseqgdltf
      961 qqgdmilvtk kdgdwwtgtl gdksgvfpsn yvrlkdseas gaagktgslg kkpeiaqvia
     1021 sytatgpeql tlapgqlili rkknpggwwe gelqargkkr qigwfpanyv kllspgtskt
     1081 tptelpksta lpsvcqvigm ydytaqndde lafnkgqiin vlnkedpdww kgevngqvgl
     1141 fpsnyvkltt dmdpsqqwca dlhlldmltp terkrqgyih elivteenyv ndlqlvteif
     1201 qkplmesell tekevamifv nwkelimcni kllkalrvrk kmsgekmpvk migdiltaql
     1261 phmqpyirfc scqlngaali qqktdevpef kefvkrlamd prckgmplss fllkpmqrvt
     1321 rypliiknii entpenhpdh shlkhaleka eelcsqvneg vrekensdrl ewiqahvqce
     1381 glseqlvfns vtnclgprkf lhsgklykak snkelygflf ndfllltqii kplgssgtdk
     1441 vfspksnlqy kmyktpifln evlvklptdp sgdepifhis hidrvytlra esinertawv
     1501 qkikaasely ietekkkrek aylvrsqrat gigrlmvniv egielkpcrs hgksnpycev
     1561 tmgsqchitk tiqdtlnpkw nsncqffikd leqdvlcitv ferdqfspdd flgrteirva
     1621 dikkdqgskg pvtkclllhe vptgeivvrl dlqlfdep
//
LOCUS       XP_053908023            1217 aa            linear   VRT 09-MAR-2023
DEFINITION  intersectin-1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053908023
VERSION     XP_053908023.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052048.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1217
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1217
                     /product="intersectin-1 isoform X4"
                     /calculated_mol_wt=137280
     Region          14..106
                     /region_name="EH"
                     /note="Eps15 homology domain; smart00027"
                     /db_xref="CDD:197477"
     Region          <131..201
                     /region_name="PLN02983"
                     /note="biotin carboxyl carrier protein of acetyl-CoA
                     carboxylase"
                     /db_xref="CDD:215533"
     Region          213..308
                     /region_name="EH"
                     /note="Eps15 homology domain; smart00027"
                     /db_xref="CDD:197477"
     Region          <362..>672
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          642..>736
                     /region_name="tolA"
                     /note="cell envelope integrity inner membrane protein
                     TolA; Provisional; PRK09510"
                     /db_xref="CDD:236545"
     Region          742..801
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(747,749,752,756,781..782,795,797..798)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212920"
     Region          801..914
                     /region_name="INTAP"
                     /note="Intersectin and clathrin adaptor AP2 binding
                     region; pfam16617"
                     /db_xref="CDD:435467"
     Region          914..965
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(919,921,924,928,945..946,959,961..962)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212922"
     Region          1003..1054
                     /region_name="SH3_Intersectin1_3"
                     /note="Third Src homology 3 domain (or SH3C) of
                     Intersectin-1; cd11991"
                     /db_xref="CDD:212924"
     Site            order(1008,1010,1013,1017,1034..1035,1048,1050..1051)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212924"
     Region          1071..1135
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(1080,1082,1085,1089,1107..1108,1126,1128..1129)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212926"
     Region          1155..1208
                     /region_name="SH3_Intersectin1_5"
                     /note="Fifth Src homology 3 domain (or SH3E) of
                     Intersectin-1; cd11995"
                     /db_xref="CDD:212928"
     Site            order(1161,1163,1166,1170,1188..1189,1202,1204..1205)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212928"
     CDS             1..1217
                     /gene="ITSN1"
                     /coded_by="XM_054052048.1:183..3836"
                     /db_xref="GeneID:104064753"
ORIGIN      
        1 maqfptpfgg nldiwaitve erakhdqqfh slkpasgfit gdqarnfffq sglpqpvlaq
       61 iwaladmnnd grmdqlefsi amkliklklq gyqlpsalpp vmkqppialp sapgfgiggi
      121 asmpslttva pvpmasipvv gmspplvssv paaavpplan gapaviqplp afahpatlpk
      181 sssfsrsgpg sqlnaklqka qsfdvasvpp vaewavpqss rlkyrqlfns hdktmsghlt
      241 gpqartilmq sslpqaqlat iwnlsdidqd gkltaeefil amhlidvams gqplppvlpp
      301 eyippsfrrv rsgsgipsas svsvdqrlpe epaleeeqqq lekklpvtfe dkkrenferg
      361 nlelekrrqa lleqqrkeqe rlaqleraeq erkererqeq erkrqlelek qlekqreler
      421 qreeerrkei erreaakrel erqrqlewer nrrqellnqr nkeqedivvl kakkktlefe
      481 lealndkknq legklqdirc rlstqrqeie stnksrelri aeithlqqql qesqqmlgrl
      541 ipekqllndq lkqvqqnslh rdslltikra leakelarqq lrdqldevek etrsklqeid
      601 ifnnqlkdlr eihnkqqlqk qksmeaerlk qkeqerktve lekqkeaqrr iqerdkqrld
      661 qvqpeeelqr qkkiqedekq kreeiarkke sedkgkqemq eklsklfqph qepvkpavqa
      721 pwsnaekapl tisaqedvki vyyralypfe srshdeisiq pgdivmvkre wvdesqtgep
      781 gwlggelkgk tgwfpanyae kipenevpas vkpaveataa pkvsvhettt slgtpastec
      841 atiannwadf sstwptnsse kpetdnwdaw aaqpsltvps agqlrqrsaf tpatvtgssp
      901 spvlgqgekv eglqaqalyp wrakkdnhln fnkndiitvl eqqdmwwfge vqgqkgwfpk
      961 syvklisgpi rkstsmdsgs sespaslkrv aspatkatms geeyiamyty esseqgdltf
     1021 qqgdmilvtk kdgdwwtgtl gdksgvfpsn yvrlkdseas gaagktgslg kkpeiaqvia
     1081 sytatgpeql tlapgqlili rkknpggwwe gelqargkkr qigwfpanyv kllspgtskt
     1141 tptelpksta lpsvcqvigm ydytaqndde lafnkgqiin vlnkedpdww kgevngqvgl
     1201 fpsnyvkltt dmdpsqq
//
LOCUS       XP_053908036             827 aa            linear   VRT 09-MAR-2023
DEFINITION  plakophilin-2 [Cuculus canorus].
ACCESSION   XP_053908036
VERSION     XP_053908036.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052061.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..827
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..827
                     /product="plakophilin-2"
                     /calculated_mol_wt=91792
     Region          <355..478
                     /region_name="PLN03200"
                     /note="cellulose synthase-interactive protein;
                     Provisional"
                     /db_xref="CDD:215629"
     Site            order(363,366,370,404,408,412,447,451,455)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:293788"
     Region          375..415
                     /region_name="ARM"
                     /note="Armadillo/beta-catenin-like repeats; smart00185"
                     /db_xref="CDD:214547"
     Region          379..415
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     Region          421..456
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     Region          464..512
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     Region          667..704
                     /region_name="ARM"
                     /note="Armadillo/beta-catenin-like repeats; smart00185"
                     /db_xref="CDD:214547"
     Region          670..702
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     Region          710..750
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     CDS             1..827
                     /gene="PKP2"
                     /coded_by="XM_054052061.1:74..2557"
                     /db_xref="GeneID:104056345"
ORIGIN      
        1 maeqgyirtv lgqeilgeld ssslalpsda rlrlpgersg eekalrihrq vqqtlarksr
       61 gslhsgslhr assvpervyn igiiendfaa rtpygfsyyq snqvaspssy angwgtkity
      121 ktmedraqrq plkrlevspq rgperlscvs ndfhynggis agfsmrhrdt grsigtippr
      181 yarseivgyt lrdsvnrgrs fkrqshmgat ndavldcvyp sptvplyhqa gnsrsmtnll
      241 ekenyltsgs vmgqvrspip shlgsqnrqs lrsswyqttf rssqnrreps qppsiasatg
      301 etdgkrmplt aamaaagrsg flqneqitin gsqlespege mtlelavsil rsentqstsr
      361 ilaavtfiqh ecfqkadarr kvfllggipk llqlldvqne diqraacgal rnlvfedndn
      421 klevseqkgi plllrvlrqa rdvetkkqit gllwnlssnd qlkhllirea lqtlteavli
      481 pysgwpdrdy pksgvltdpd ifynatgclr nmssagpegr kkmrecdgli dslvyyiqgt
      541 iadhepndka tencvcilhn lsyqleielp escahsiymq rrntshndkt pgcfgtrsrk
      601 vkekqqdtpl peeksnprgv eslwhstlir iylsliakst rnytqeaslg alqnltagtg
      661 pmpfavartv vlkanglpsi rtmlhvshpt vkktavsllr nlsrntslqs diarevlpdl
      721 vsvlpesvpa sdilcettas icytlynltq snshnarlll nadglpkiit ismndsnmfs
      781 kasraasvll yslwshtdlh saykkadfkk vdfinsrttk aynslkd
//
LOCUS       XP_009561677             370 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat domain-containing protein 16 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009561677
VERSION     XP_009561677.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563382.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561677.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..370
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..370
                     /product="ankyrin repeat domain-containing protein 16
                     isoform X1"
                     /calculated_mol_wt=40826
     Region          10..42
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          46..76
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          47..277
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          82..109
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(84..85,88..90,92..93,97,100,109,111,113,117..118,
                     121..123,125..126,130,133,142,144,146,150..151,154..156,
                     158..159,163,166)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          111..142
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(180,184..185,188..190,192..193,197,200,210,212,214,
                     218..219,222..224,226..227,231,234,244,246,248,287..288,
                     291..293,295..296,300,303,312)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          180..210
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          212..244
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          246..312
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          249..278
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          282..335
                     /region_name="Ank_4"
                     /note="Ankyrin repeats (many copies); pfam13637"
                     /db_xref="CDD:372654"
     Region          314..338
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..370
                     /gene="ANKRD16"
                     /coded_by="XM_009563382.2:1314..2426"
                     /db_xref="GeneID:104061439"
ORIGIN      
        1 mvegkrprll lqlvqegqld llrdelrrsd vpevsvrsqr ygrleetllh haaryghrdv
       61 laylveelgm dleafnsdyk rplheaasmg hgecvsylle kgasvdclkk adwtplmmac
      121 trqnlevika lvehganpll knkdgwncfh iasreghpqv lqylldvspg swdtestikr
      181 tplhtaamhg cfdvvellle rcqykpdsrd kcgvtpfmda iqnghvniar lllekhqacp
      241 tavdalgaqp vhraaitaqd eaiqflvsel gidvnerttt lqltalhyaa keghvhtiqt
      301 llalgadvha kdgksrsalh macagqqada arillsvglq dtpdgtgvla wqlarkpdvi
      361 qvlqemnvst
//
LOCUS       XP_053908057             370 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat domain-containing protein 16 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053908057
VERSION     XP_053908057.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052082.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..370
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..370
                     /product="ankyrin repeat domain-containing protein 16
                     isoform X1"
                     /calculated_mol_wt=40826
     Region          10..42
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          46..76
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          47..277
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          82..109
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(84..85,88..90,92..93,97,100,109,111,113,117..118,
                     121..123,125..126,130,133,142,144,146,150..151,154..156,
                     158..159,163,166)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          111..142
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(180,184..185,188..190,192..193,197,200,210,212,214,
                     218..219,222..224,226..227,231,234,244,246,248,287..288,
                     291..293,295..296,300,303,312)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          180..210
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          212..244
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          246..312
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          249..278
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          282..335
                     /region_name="Ank_4"
                     /note="Ankyrin repeats (many copies); pfam13637"
                     /db_xref="CDD:372654"
     Region          314..338
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..370
                     /gene="ANKRD16"
                     /coded_by="XM_054052082.1:78..1190"
                     /db_xref="GeneID:104061439"
ORIGIN      
        1 mvegkrprll lqlvqegqld llrdelrrsd vpevsvrsqr ygrleetllh haaryghrdv
       61 laylveelgm dleafnsdyk rplheaasmg hgecvsylle kgasvdclkk adwtplmmac
      121 trqnlevika lvehganpll knkdgwncfh iasreghpqv lqylldvspg swdtestikr
      181 tplhtaamhg cfdvvellle rcqykpdsrd kcgvtpfmda iqnghvniar lllekhqacp
      241 tavdalgaqp vhraaitaqd eaiqflvsel gidvnerttt lqltalhyaa keghvhtiqt
      301 llalgadvha kdgksrsalh macagqqada arillsvglq dtpdgtgvla wqlarkpdvi
      361 qvlqemnvst
//
LOCUS       XP_053908065             370 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat domain-containing protein 16 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053908065
VERSION     XP_053908065.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052090.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..370
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..370
                     /product="ankyrin repeat domain-containing protein 16
                     isoform X1"
                     /calculated_mol_wt=40826
     Region          10..42
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          46..76
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          47..277
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          82..109
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(84..85,88..90,92..93,97,100,109,111,113,117..118,
                     121..123,125..126,130,133,142,144,146,150..151,154..156,
                     158..159,163,166)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          111..142
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(180,184..185,188..190,192..193,197,200,210,212,214,
                     218..219,222..224,226..227,231,234,244,246,248,287..288,
                     291..293,295..296,300,303,312)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          180..210
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          212..244
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          246..312
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          249..278
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          282..335
                     /region_name="Ank_4"
                     /note="Ankyrin repeats (many copies); pfam13637"
                     /db_xref="CDD:372654"
     Region          314..338
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..370
                     /gene="ANKRD16"
                     /coded_by="XM_054052090.1:38..1150"
                     /db_xref="GeneID:104061439"
ORIGIN      
        1 mvegkrprll lqlvqegqld llrdelrrsd vpevsvrsqr ygrleetllh haaryghrdv
       61 laylveelgm dleafnsdyk rplheaasmg hgecvsylle kgasvdclkk adwtplmmac
      121 trqnlevika lvehganpll knkdgwncfh iasreghpqv lqylldvspg swdtestikr
      181 tplhtaamhg cfdvvellle rcqykpdsrd kcgvtpfmda iqnghvniar lllekhqacp
      241 tavdalgaqp vhraaitaqd eaiqflvsel gidvnerttt lqltalhyaa keghvhtiqt
      301 llalgadvha kdgksrsalh macagqqada arillsvglq dtpdgtgvla wqlarkpdvi
      361 qvlqemnvst
//
LOCUS       XP_053908074             319 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat domain-containing protein 16 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053908074
VERSION     XP_053908074.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052099.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..319
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..319
                     /product="ankyrin repeat domain-containing protein 16
                     isoform X2"
                     /calculated_mol_wt=35740
     Region          10..42
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          46..76
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          47..277
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          82..109
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(84..85,88..90,92..93,97,100,109,111,113,117..118,
                     121..123,125..126,130,133,142,144,146,150..151,154..156,
                     158..159,163,166)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          111..142
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(180,184..185,188..190,192..193,197,200,210,212,214,
                     218..219,222..224,226..227,231,234,244,246,248,252..253,
                     256..258,260..261,265,269)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          180..210
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          212..244
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          246..277
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..319
                     /gene="ANKRD16"
                     /coded_by="XM_054052099.1:1317..2276"
                     /db_xref="GeneID:104061439"
ORIGIN      
        1 mvegkrprll lqlvqegqld llrdelrrsd vpevsvrsqr ygrleetllh haaryghrdv
       61 laylveelgm dleafnsdyk rplheaasmg hgecvsylle kgasvdclkk adwtplmmac
      121 trqnlevika lvehganpll knkdgwncfh iasreghpqv lqylldvspg swdtestikr
      181 tplhtaamhg cfdvvellle rcqykpdsrd kcgvtpfmda iqnghvniar lllekhqacp
      241 tavdalgaqp vhraaitaqd eaiqflvsel gidvnerttt lqltalhyaa kkdlerlehi
      301 wtrgtelekg leprdsgss
//
LOCUS       XP_053908084             316 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat domain-containing protein 16 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053908084
VERSION     XP_053908084.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052109.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..316
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..316
                     /product="ankyrin repeat domain-containing protein 16
                     isoform X3"
                     /calculated_mol_wt=35139
     Region          10..42
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          46..76
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          47..287
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          82..109
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(84..85,88..90,92..93,97,100,109,111,113,117..118,
                     121..123,125..126,130,133,142,144,146,150..151,154..156,
                     158..159,163,166)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          111..142
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          181..210
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          212..258
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          260..284
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..316
                     /gene="ANKRD16"
                     /coded_by="XM_054052109.1:1316..2266"
                     /db_xref="GeneID:104061439"
ORIGIN      
        1 mvegkrprll lqlvqegqld llrdelrrsd vpevsvrsqr ygrleetllh haaryghrdv
       61 laylveelgm dleafnsdyk rplheaasmg hgecvsylle kgasvdclkk adwtplmmac
      121 trqnlevika lvehganpll knkdgwncfh iasreghpqv lqylldvspg swdtestikr
      181 tplhtaamhg cfdvvellle rcqykpdsrd kcgvtpfmda iqnghvniar lllekhqegh
      241 vhtiqtllal gadvhakdgk srsalhmaca gqqadaaril lsvglqdtpd gtgvlawqla
      301 rkpdviqvlq emnvst
//
LOCUS       XP_053908086             311 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat domain-containing protein 16 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053908086
VERSION     XP_053908086.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052111.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..311
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..311
                     /product="ankyrin repeat domain-containing protein 16
                     isoform X4"
                     /calculated_mol_wt=34211
     Region          48..285
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          54..83
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(121,125..126,129..131,133..134,138,141,151,153,155,
                     159..160,163..165,167..168,172,175,185,187,189,228..229,
                     232..234,236..237,241,244,253)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          121..151
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          153..185
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          187..253
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          190..219
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          255..279
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..311
                     /gene="ANKRD16"
                     /coded_by="XM_054052111.1:1314..2249"
                     /db_xref="GeneID:104061439"
ORIGIN      
        1 mvegkrprll lqlvqegqld llrdelrrsd vpevsvrsqr ygrleetllh haartplmma
       61 ctrqnlevik alvehganpl lknkdgwncf hiasreghpq vlqylldvsp gswdtestik
      121 rtplhtaamh gcfdvvelll ercqykpdsr dkcgvtpfmd aiqnghvnia rlllekhqac
      181 ptavdalgaq pvhraaitaq deaiqflvse lgidvnertt tlqltalhya akeghvhtiq
      241 tllalgadvh akdgksrsal hmacagqqad aarillsvgl qdtpdgtgvl awqlarkpdv
      301 iqvlqemnvs t
//
LOCUS       XP_053908100             971 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 654 isoform X1 [Cuculus canorus].
ACCESSION   XP_053908100
VERSION     XP_053908100.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052125.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..971
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..971
                     /product="zinc finger protein 654 isoform X1"
                     /calculated_mol_wt=110075
     Region          396..415
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275370"
     Site            order(401,403,404,406..407,410..411,414,428,430..432,
                     434..435,439,442)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275370"
     Region          423..443
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275370"
     Region          586..673
                     /region_name="zf-C2H2_8"
                     /note="C2H2-type zinc ribbon; pfam15909"
                     /db_xref="CDD:464935"
     Region          586..609
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          627..647
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          655..677
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..971
                     /gene="ZNF654"
                     /coded_by="XM_054052125.1:447..3362"
                     /db_xref="GeneID:104055966"
ORIGIN      
        1 mnlelvtrii rdggpwedpv lqailkakpv sqelvnkyls senplffelr aryliaceri
       61 peamaliksc inhpdiskdl yfhqalftcl ymspledqlf qehllrtdck sgieiicnte
      121 kegkttlalq lcesflvpql qngdmyciwe lifiwsklql ksnpskqvfv dhcyqllria
      181 tnvrvifpfm kvikdevged glqicveicg calqldlred pnmksliyka iahflpndle
      241 ilricalsif flertlesyy tveylykcad eeynectssv qnrvrfellp ilkkglffdp
      301 efwnflmikq nclallgdka figlgestle natantekim eyrtlteerv cltdvsngel
      361 dpedlsesqs kgntkknhea letskmldkt epihrcvicn keflgghivk haqvhqkkgs
      421 fscvlctrkf rqkglmlkhl rnhvrkierq hlaavleagq qapapnelec sevslsleng
      481 nsdgskdnep etavapsadh vvqveednve qvfdavenrl sdqddaaten ssdscfnsvp
      541 dtlsteslpe ddessskesp vlhkvngafc pqkdvdsmde egsfkcpasg carvfkkirf
      601 lnkharkahp tdlkvqqhim kwnkgkcrfc qrkfadsqhf idhlkrhvyp nvyfclhfnc
      661 nqrfklstel aehtkshsvf kaqcnfaecc elfeelplly eheaqhylnk tsecsedase
      721 kdssddpsel csyqdddesi neketvdlpv ptwksrkdst epktyiqsge kkannvihng
      781 neslsessat vlslidqktp mlqpnsensn vvsdqlvngh sdldktssks seipldrvae
      841 etrtengsvl pvlqnchdvp qnnaaasqlp skpnqttett sygviltkpy vrplppsyld
      901 eryismpkrr kiltdevnad seqdklcsks terlrcgkcl tiycnseale ahlaqkkcqt
      961 lfgfdsddes a
//
LOCUS       XP_009555458             782 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 654 isoform X2 [Cuculus canorus].
ACCESSION   XP_009555458
VERSION     XP_009555458.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557163.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..782
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..782
                     /product="zinc finger protein 654 isoform X2"
                     /calculated_mol_wt=88137
     Region          207..226
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275370"
     Site            order(212,214,215,217..218,221..222,225,239,241..243,
                     245..246,250,253)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275370"
     Region          234..254
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275370"
     Region          397..484
                     /region_name="zf-C2H2_8"
                     /note="C2H2-type zinc ribbon; pfam15909"
                     /db_xref="CDD:464935"
     Region          397..420
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          438..458
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          466..488
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..782
                     /gene="ZNF654"
                     /coded_by="XM_009557163.2:259..2607"
                     /db_xref="GeneID:104055966"
ORIGIN      
        1 mkvikdevge dglqicveic gcalqldlre dpnmksliyk aiahflpndl eilricalsi
       61 fflertlesy ytveylykca deeynectss vqnrvrfell pilkkglffd pefwnflmik
      121 qnclallgdk afiglgestl enatanteki meyrtlteer vcltdvsnge ldpedlsesq
      181 skgntkknhe aletskmldk tepihrcvic nkeflgghiv khaqvhqkkg sfscvlctrk
      241 frqkglmlkh lrnhvrkier qhlaavleag qqapapnele csevslslen gnsdgskdne
      301 petavapsad hvvqveednv eqvfdavenr lsdqddaate nssdscfnsv pdtlsteslp
      361 eddessskes pvlhkvngaf cpqkdvdsmd eegsfkcpas gcarvfkkir flnkharkah
      421 ptdlkvqqhi mkwnkgkcrf cqrkfadsqh fidhlkrhvy pnvyfclhfn cnqrfklste
      481 laehtkshsv fkaqcnfaec celfeelpll yeheaqhyln ktsecsedas ekdssddpse
      541 lcsyqdddes ineketvdlp vptwksrkds tepktyiqsg ekkannvihn gneslsessa
      601 tvlslidqkt pmlqpnsens nvvsdqlvng hsdldktssk sseipldrva eetrtengsv
      661 lpvlqnchdv pqnnaaasql pskpnqttet tsygviltkp yvrplppsyl deryismpkr
      721 rkiltdevna dseqdklcsk sterlrcgkc ltiycnseal eahlaqkkcq tlfgfdsdde
      781 sa
//
LOCUS       XP_053908124             715 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 44 [Cuculus canorus].
ACCESSION   XP_053908124
VERSION     XP_053908124.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052149.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..715
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..715
                     /product="ubiquitin carboxyl-terminal hydrolase 44"
                     /calculated_mol_wt=81726
     Region          26..88
                     /region_name="zf-UBP"
                     /note="Zn-finger in ubiquitin-hydrolases and other
                     protein; pfam02148"
                     /db_xref="CDD:460464"
     Region          273..678
                     /region_name="UCH"
                     /note="Ubiquitin carboxyl-terminal hydrolase; pfam00443"
                     /db_xref="CDD:425685"
     Site            order(277,282,639,657)
                     /site_type="active"
                     /db_xref="CDD:239072"
     CDS             1..715
                     /gene="USP44"
                     /coded_by="XM_054052149.1:145..2292"
                     /db_xref="GeneID:104055170"
ORIGIN      
        1 mdkckhigrl rlaqdhsiln pqkwhcvdcn ttesvwacls cshvacgryi eehalkhfqe
       61 sshpvalevn elyvfcyfcd dyvlndnatg dlkllrstls aiksqnyect trsgrtlrsm
      121 gtsddsylsh gggaqallrk edrmftalwh rrrallgkif rswleltatg qrmleeerrr
      181 eeaeerrnka rkrrqerkre lkaemekmpp rkssrlqnql rmssgttpcl qkmsqnvepv
      241 aefkkpytsd eirlkkisds pikrrptvtp gvtglrnlgn tcymnsvlqv lshllifrec
      301 flkldlnetq ellatatngk trasskhlsa astlhmnenq ekvkrscsvr rsslssglsg
      361 gasesrnmel iqprepsskh islchelhtl fqvmwsgkwa lvspfamlhs vwrlipafrg
      421 yaqqdaqefl celldkvqqe lettgtryst lipasqrkli kqvlnvvnni fhgqllsqvt
      481 clacdnksnt iepfwdlsle fperyhcngk evspqypcll temlakftet ealegkiyac
      541 dqcntkrrkf sskpviltea qkqlmvcrlp qvlrlhlkrf rwsgrnhrek igvhvnfdqm
      601 lnmepyccre slksllpdcf iydlsavvmh hgkgfgsghy taycynsegg fwvhcndskl
      661 nmctmeevck aqayilfysq rltqanghgk ipcpstaasq qhteladcsm dnsss
//
LOCUS       XP_053908132             715 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 44 [Cuculus canorus].
ACCESSION   XP_053908132
VERSION     XP_053908132.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052157.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..715
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..715
                     /product="ubiquitin carboxyl-terminal hydrolase 44"
                     /calculated_mol_wt=81726
     Region          26..88
                     /region_name="zf-UBP"
                     /note="Zn-finger in ubiquitin-hydrolases and other
                     protein; pfam02148"
                     /db_xref="CDD:460464"
     Region          273..678
                     /region_name="UCH"
                     /note="Ubiquitin carboxyl-terminal hydrolase; pfam00443"
                     /db_xref="CDD:425685"
     Site            order(277,282,639,657)
                     /site_type="active"
                     /db_xref="CDD:239072"
     CDS             1..715
                     /gene="USP44"
                     /coded_by="XM_054052157.1:161..2308"
                     /db_xref="GeneID:104055170"
ORIGIN      
        1 mdkckhigrl rlaqdhsiln pqkwhcvdcn ttesvwacls cshvacgryi eehalkhfqe
       61 sshpvalevn elyvfcyfcd dyvlndnatg dlkllrstls aiksqnyect trsgrtlrsm
      121 gtsddsylsh gggaqallrk edrmftalwh rrrallgkif rswleltatg qrmleeerrr
      181 eeaeerrnka rkrrqerkre lkaemekmpp rkssrlqnql rmssgttpcl qkmsqnvepv
      241 aefkkpytsd eirlkkisds pikrrptvtp gvtglrnlgn tcymnsvlqv lshllifrec
      301 flkldlnetq ellatatngk trasskhlsa astlhmnenq ekvkrscsvr rsslssglsg
      361 gasesrnmel iqprepsskh islchelhtl fqvmwsgkwa lvspfamlhs vwrlipafrg
      421 yaqqdaqefl celldkvqqe lettgtryst lipasqrkli kqvlnvvnni fhgqllsqvt
      481 clacdnksnt iepfwdlsle fperyhcngk evspqypcll temlakftet ealegkiyac
      541 dqcntkrrkf sskpviltea qkqlmvcrlp qvlrlhlkrf rwsgrnhrek igvhvnfdqm
      601 lnmepyccre slksllpdcf iydlsavvmh hgkgfgsghy taycynsegg fwvhcndskl
      661 nmctmeevck aqayilfysq rltqanghgk ipcpstaasq qhteladcsm dnsss
//
LOCUS       XP_053908138             715 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 44 [Cuculus canorus].
ACCESSION   XP_053908138
VERSION     XP_053908138.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052163.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..715
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..715
                     /product="ubiquitin carboxyl-terminal hydrolase 44"
                     /calculated_mol_wt=81726
     Region          26..88
                     /region_name="zf-UBP"
                     /note="Zn-finger in ubiquitin-hydrolases and other
                     protein; pfam02148"
                     /db_xref="CDD:460464"
     Region          273..678
                     /region_name="UCH"
                     /note="Ubiquitin carboxyl-terminal hydrolase; pfam00443"
                     /db_xref="CDD:425685"
     Site            order(277,282,639,657)
                     /site_type="active"
                     /db_xref="CDD:239072"
     CDS             1..715
                     /gene="USP44"
                     /coded_by="XM_054052163.1:99..2246"
                     /db_xref="GeneID:104055170"
ORIGIN      
        1 mdkckhigrl rlaqdhsiln pqkwhcvdcn ttesvwacls cshvacgryi eehalkhfqe
       61 sshpvalevn elyvfcyfcd dyvlndnatg dlkllrstls aiksqnyect trsgrtlrsm
      121 gtsddsylsh gggaqallrk edrmftalwh rrrallgkif rswleltatg qrmleeerrr
      181 eeaeerrnka rkrrqerkre lkaemekmpp rkssrlqnql rmssgttpcl qkmsqnvepv
      241 aefkkpytsd eirlkkisds pikrrptvtp gvtglrnlgn tcymnsvlqv lshllifrec
      301 flkldlnetq ellatatngk trasskhlsa astlhmnenq ekvkrscsvr rsslssglsg
      361 gasesrnmel iqprepsskh islchelhtl fqvmwsgkwa lvspfamlhs vwrlipafrg
      421 yaqqdaqefl celldkvqqe lettgtryst lipasqrkli kqvlnvvnni fhgqllsqvt
      481 clacdnksnt iepfwdlsle fperyhcngk evspqypcll temlakftet ealegkiyac
      541 dqcntkrrkf sskpviltea qkqlmvcrlp qvlrlhlkrf rwsgrnhrek igvhvnfdqm
      601 lnmepyccre slksllpdcf iydlsavvmh hgkgfgsghy taycynsegg fwvhcndskl
      661 nmctmeevck aqayilfysq rltqanghgk ipcpstaasq qhteladcsm dnsss
//
LOCUS       XP_053908144             715 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 44 [Cuculus canorus].
ACCESSION   XP_053908144
VERSION     XP_053908144.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052169.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..715
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..715
                     /product="ubiquitin carboxyl-terminal hydrolase 44"
                     /calculated_mol_wt=81726
     Region          26..88
                     /region_name="zf-UBP"
                     /note="Zn-finger in ubiquitin-hydrolases and other
                     protein; pfam02148"
                     /db_xref="CDD:460464"
     Region          273..678
                     /region_name="UCH"
                     /note="Ubiquitin carboxyl-terminal hydrolase; pfam00443"
                     /db_xref="CDD:425685"
     Site            order(277,282,639,657)
                     /site_type="active"
                     /db_xref="CDD:239072"
     CDS             1..715
                     /gene="USP44"
                     /coded_by="XM_054052169.1:99..2246"
                     /db_xref="GeneID:104055170"
ORIGIN      
        1 mdkckhigrl rlaqdhsiln pqkwhcvdcn ttesvwacls cshvacgryi eehalkhfqe
       61 sshpvalevn elyvfcyfcd dyvlndnatg dlkllrstls aiksqnyect trsgrtlrsm
      121 gtsddsylsh gggaqallrk edrmftalwh rrrallgkif rswleltatg qrmleeerrr
      181 eeaeerrnka rkrrqerkre lkaemekmpp rkssrlqnql rmssgttpcl qkmsqnvepv
      241 aefkkpytsd eirlkkisds pikrrptvtp gvtglrnlgn tcymnsvlqv lshllifrec
      301 flkldlnetq ellatatngk trasskhlsa astlhmnenq ekvkrscsvr rsslssglsg
      361 gasesrnmel iqprepsskh islchelhtl fqvmwsgkwa lvspfamlhs vwrlipafrg
      421 yaqqdaqefl celldkvqqe lettgtryst lipasqrkli kqvlnvvnni fhgqllsqvt
      481 clacdnksnt iepfwdlsle fperyhcngk evspqypcll temlakftet ealegkiyac
      541 dqcntkrrkf sskpviltea qkqlmvcrlp qvlrlhlkrf rwsgrnhrek igvhvnfdqm
      601 lnmepyccre slksllpdcf iydlsavvmh hgkgfgsghy taycynsegg fwvhcndskl
      661 nmctmeevck aqayilfysq rltqanghgk ipcpstaasq qhteladcsm dnsss
//
LOCUS       XP_053908165             292 aa            linear   VRT 09-MAR-2023
DEFINITION  palmitoyl-protein thioesterase ABHD10, mitochondrial [Cuculus
            canorus].
ACCESSION   XP_053908165
VERSION     XP_053908165.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052190.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..292
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..292
                     /product="palmitoyl-protein thioesterase ABHD10,
                     mitochondrial"
                     /calculated_mol_wt=31676
     Region          58..289
                     /region_name="YvaK"
                     /note="Esterase/lipase [Secondary metabolites
                     biosynthesis, transport and catabolism]; COG1647"
                     /db_xref="CDD:441253"
     CDS             1..292
                     /gene="ABHD10"
                     /coded_by="XM_054052190.1:31..909"
                     /db_xref="GeneID:104056004"
ORIGIN      
        1 maaaaaasal rglargggrr raspvsvisp lglpvcrlks svsflarpdr pnlayhklkg
       61 rnpgviflpg lnstmngqka taledfcnsl ghafirfdyt gcgssggkfe dctigkwrkd
      121 vlsildeltd gpqilvgssl ggwlmlhaai arpdkiaalv gvavaadhlv tafkklpiea
      181 qkeieekgew kfptkhneeg yysltydlik eaenhcvlns pipitcpirl ihgmkdddvp
      241 wqismqvadr vlskdvdvil rkigqhrmse kedtkllvnt vddlidklat la
//
LOCUS       XP_009556048             471 aa            linear   VRT 09-MAR-2023
DEFINITION  5-hydroxytryptamine receptor 2A [Cuculus canorus].
ACCESSION   XP_009556048
VERSION     XP_009556048.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557753.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..471
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..471
                     /product="5-hydroxytryptamine receptor 2A"
                     /calculated_mol_wt=52561
     Region          76..391
                     /region_name="7tmA_5-HT2A"
                     /note="serotonin receptor subtype 2A, member of the class
                     A family of seven-transmembrane G protein-coupled
                     receptors; cd15304"
                     /db_xref="CDD:341345"
     Region          77..103
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:341345"
     Region          110..136
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:341345"
     Region          149..179
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:341345"
     Site            order(153,156..157,160..161,228,235..236,239,243,336,
                     339..340,343,346,359,362..363,366,370)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:341345"
     Region          191..214
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:341345"
     Region          232..261
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:341345"
     Region          316..346
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:341345"
     Region          359..384
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:341345"
     CDS             1..471
                     /gene="HTR2A"
                     /coded_by="XM_009557753.2:1137..2552"
                     /db_xref="GeneID:104056499"
ORIGIN      
        1 mdilcdeess vnptansliq inherrlyrn vygageinis hlfnltvdse nltnlscesk
       61 vsppcysslf qlsqknwpal ltvivivlti agnilvimav slekklqnat nyflmslaia
      121 dmllgflvmp vsmltilygy twplptklca iwiyldvlfs tasimhlcai sldryiairn
      181 pihhsrfnsr tkafakiiav wtisvgismp vpvfglqdds kvfkkgscll addnfvlvgs
      241 fvsffiplti mvvtyfltik slqkeamlcv ndigpktkfa sfsflpqssl sseklfqrsl
      301 nrdvgtsgrr tmqsisneqk askvlgivff lfvvmwcpff itnvmavick escnqevigg
      361 llnvfvwigy lssavnplvy tlfnktyrsa fsryiqcryk eekkpfqlil vntipalayn
      421 ssqlqlaqmk slkkeakmma kdysmvtigi hhldgtskgs ispanekvsg v
//
LOCUS       XP_009567005            1530 aa            linear   VRT 09-MAR-2023
DEFINITION  copper-transporting ATPase 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_009567005
VERSION     XP_009567005.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568710.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567005.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1530
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1530
                     /product="copper-transporting ATPase 2 isoform X1"
                     /calculated_mol_wt=165882
     Region          129..191
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(135..137,140)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          214..277
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(220..222,225)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          326..384
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(332..334,337)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          424..492
                     /region_name="CopZ"
                     /note="Copper chaperone CopZ [Inorganic ion transport and
                     metabolism]; COG2608"
                     /db_xref="CDD:442020"
     Region          549..611
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(554..556,559)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          624..687
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(630..632,635)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          709..1422
                     /region_name="P-type_ATPase_Cu-like"
                     /note="P-type heavy metal-transporting ATPase, similar to
                     human copper-transporting ATPases, ATP7A and ATP7B;
                     cd02094"
                     /db_xref="CDD:319783"
     Site            order(1040,1042,1399)
                     /site_type="other"
                     /note="putative Cu binding site [ion binding]"
                     /db_xref="CDD:319783"
     Site            order(1084..1086,1154,1216..1218,1248,1288..1290,1310,
                     1313,1316,1335,1338)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:319783"
     CDS             1..1530
                     /gene="ATP7B"
                     /coded_by="XM_009568710.2:207..4799"
                     /db_xref="GeneID:104066139"
ORIGIN      
        1 merkldnkmk relsclatln nknitlvsir kqqavhdvpe llitgekset espvkassnl
       61 qkeekllqsy smgmpevnti erqilsntds spdceveptm khnfafdnmg yeegfetaps
      121 pssqehtvtv nvvgmtcqsc vqsiegqisk vkgivgikvs leqnnaviky lqseispeqi
      181 cqeiqdigfd anvveekltt atvnlscsre avvklrvegm tcqscvtnie gnirklhgvv
      241 kvkvslgnqe aiiayypyii hpdelksyis nlgydctiks ksaplklnvl hlrhlqnanp
      301 ketlasfesd eadplvakvs gtamvtirie gmhcrscvrn iegnlsdlpg iqsikvsleh
      361 kravvqyspn litlsalqqa ieslppgnfk vcllngsevn kgaspspall cdffreplqg
      421 ttctavirid gmtcnscvqs iegtisqrrg vqhievslag rtgtihynpa vtngeelraa
      481 iedmgfdasv ltdtttgerr hqtdtsnaav qpqapepprq gcasdalpds pqldepnhpg
      541 retaekcflq itgmtcascv stiernlqke dgivsvlval msgkaeikyk pefiqpleia
      601 qliqnlgfea tviedhaete gnvellitgm tcascvhnie sklmrtngif yasvalatck
      661 ahiqfdpeit gprdiikiie eigfhasvar rvpnahnldh kkeiqqwrks flcsllfgvp
      721 vlilmiymli pddehrgsmv lernlipgls ilnllffilc tfvqflggwy fyvqaykslk
      781 hktanmdvli ilattiayvy scvilmvaii ekaekspvtf fdtppmlfvf ialgrwlehi
      841 aksktseala klislqatea tvvtlgpdhs ivreeqvave lvqrgdivkv vpggkfpvdg
      901 kviegssmad eslitgeamp vtkkpgstvi agsinahgsv lvnathvgnd ttlaqivklv
      961 eeaqmskapi qqladkfsgy fvpfiiiist vtlivwiaig finfdviqky fpnqnkhvsk
     1021 aelilrfafq tsitvlsiac pcslglatpt avmvgtgvaa qngilikggk plemahkikt
     1081 vmfdktgtit cgvpkvmrvl llgdmavlsl kkvlavvgta eassehplgv avtkycreel
     1141 gtqnlgyctd fqavpgcgis ckvggvgavl gtaeegldkl dtnrsrdssa clgdnalitl
     1201 skshgpstsh tysvlignre wmrrnglhia ndvndamtdh etkgqtailv aidgvlcami
     1261 aiadtvkqea alavhtlknm gidvvlitgd nrktakaiat qvgikkvfae vlpshkvakv
     1321 qelqngkrkv amvgdgvnds palaradvgi aigtgtdvai eaadvvlirn dlldvvasih
     1381 lskrivrrir vnlilaliyn llgipiaagv fmpvglvlqp wmgsaamaas svsvvlsslq
     1441 lkcykkpdse syeaqaqgcm kpltpsqisv higmddrkrd ssrpalwdqi sqvslsalts
     1501 dklqrrngld eeegdkwsll mngrdeeqyi
//
LOCUS       XP_053908198            1504 aa            linear   VRT 09-MAR-2023
DEFINITION  copper-transporting ATPase 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053908198
VERSION     XP_053908198.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052223.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1504
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1504
                     /product="copper-transporting ATPase 2 isoform X2"
                     /calculated_mol_wt=163213
     Region          129..191
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(135..137,140)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          214..277
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(220..222,225)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          326..384
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(332..334,337)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          424..492
                     /region_name="CopZ"
                     /note="Copper chaperone CopZ [Inorganic ion transport and
                     metabolism]; COG2608"
                     /db_xref="CDD:442020"
     Region          549..611
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(554..556,559)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          624..687
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(630..632,635)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          709..1396
                     /region_name="P-type_ATPase_Cu-like"
                     /note="P-type heavy metal-transporting ATPase, similar to
                     human copper-transporting ATPases, ATP7A and ATP7B;
                     cd02094"
                     /db_xref="CDD:319783"
     Site            order(1040,1042,1373)
                     /site_type="other"
                     /note="putative Cu binding site [ion binding]"
                     /db_xref="CDD:319783"
     Site            order(1084..1086,1128,1190..1192,1222,1262..1264,1284,
                     1287,1290,1309,1312)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:319783"
     CDS             1..1504
                     /gene="ATP7B"
                     /coded_by="XM_054052223.1:207..4721"
                     /db_xref="GeneID:104066139"
ORIGIN      
        1 merkldnkmk relsclatln nknitlvsir kqqavhdvpe llitgekset espvkassnl
       61 qkeekllqsy smgmpevnti erqilsntds spdceveptm khnfafdnmg yeegfetaps
      121 pssqehtvtv nvvgmtcqsc vqsiegqisk vkgivgikvs leqnnaviky lqseispeqi
      181 cqeiqdigfd anvveekltt atvnlscsre avvklrvegm tcqscvtnie gnirklhgvv
      241 kvkvslgnqe aiiayypyii hpdelksyis nlgydctiks ksaplklnvl hlrhlqnanp
      301 ketlasfesd eadplvakvs gtamvtirie gmhcrscvrn iegnlsdlpg iqsikvsleh
      361 kravvqyspn litlsalqqa ieslppgnfk vcllngsevn kgaspspall cdffreplqg
      421 ttctavirid gmtcnscvqs iegtisqrrg vqhievslag rtgtihynpa vtngeelraa
      481 iedmgfdasv ltdtttgerr hqtdtsnaav qpqapepprq gcasdalpds pqldepnhpg
      541 retaekcflq itgmtcascv stiernlqke dgivsvlval msgkaeikyk pefiqpleia
      601 qliqnlgfea tviedhaete gnvellitgm tcascvhnie sklmrtngif yasvalatck
      661 ahiqfdpeit gprdiikiie eigfhasvar rvpnahnldh kkeiqqwrks flcsllfgvp
      721 vlilmiymli pddehrgsmv lernlipgls ilnllffilc tfvqflggwy fyvqaykslk
      781 hktanmdvli ilattiayvy scvilmvaii ekaekspvtf fdtppmlfvf ialgrwlehi
      841 aksktseala klislqatea tvvtlgpdhs ivreeqvave lvqrgdivkv vpggkfpvdg
      901 kviegssmad eslitgeamp vtkkpgstvi agsinahgsv lvnathvgnd ttlaqivklv
      961 eeaqmskapi qqladkfsgy fvpfiiiist vtlivwiaig finfdviqky fpnqnkhvsk
     1021 aelilrfafq tsitvlsiac pcslglatpt avmvgtgvaa qngilikggk plemahkikt
     1081 vmfdktgtit cgvpkvmrvl llgdmavlsl kkelgtqnlg yctdfqavpg cgisckvggv
     1141 gavlgtaeeg ldkldtnrsr dssaclgdna litlskshgp stshtysvli gnrewmrrng
     1201 lhiandvnda mtdhetkgqt ailvaidgvl camiaiadtv kqeaalavht lknmgidvvl
     1261 itgdnrktak aiatqvgikk vfaevlpshk vakvqelqng krkvamvgdg vndspalara
     1321 dvgiaigtgt dvaieaadvv lirndlldvv asihlskriv rrirvnlila liynllgipi
     1381 aagvfmpvgl vlqpwmgsaa maassvsvvl sslqlkcykk pdsesyeaqa qgcmkpltps
     1441 qisvhigmdd rkrdssrpal wdqisqvsls altsdklqrr ngldeeegdk wsllmngrde
     1501 eqyi
//
LOCUS       XP_053908206            1431 aa            linear   VRT 09-MAR-2023
DEFINITION  copper-transporting ATPase 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053908206
VERSION     XP_053908206.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052231.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1431
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1431
                     /product="copper-transporting ATPase 2 isoform X3"
                     /calculated_mol_wt=154740
     Region          30..92
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(36..38,41)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          115..178
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(121..123,126)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          227..285
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(233..235,238)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          325..393
                     /region_name="CopZ"
                     /note="Copper chaperone CopZ [Inorganic ion transport and
                     metabolism]; COG2608"
                     /db_xref="CDD:442020"
     Region          450..512
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(455..457,460)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          525..588
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(531..533,536)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          610..1323
                     /region_name="P-type_ATPase_Cu-like"
                     /note="P-type heavy metal-transporting ATPase, similar to
                     human copper-transporting ATPases, ATP7A and ATP7B;
                     cd02094"
                     /db_xref="CDD:319783"
     Site            order(941,943,1300)
                     /site_type="other"
                     /note="putative Cu binding site [ion binding]"
                     /db_xref="CDD:319783"
     Site            order(985..987,1055,1117..1119,1149,1189..1191,1211,1214,
                     1217,1236,1239)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:319783"
     CDS             1..1431
                     /gene="ATP7B"
                     /coded_by="XM_054052231.1:178..4473"
                     /db_xref="GeneID:104066139"
ORIGIN      
        1 mkhnfafdnm gyeegfetap spssqehtvt vnvvgmtcqs cvqsiegqis kvkgivgikv
       61 sleqnnavik ylqseispeq icqeiqdigf danvveeklt tatvnlscsr eavvklrveg
      121 mtcqscvtni egnirklhgv vkvkvslgnq eaiiayypyi ihpdelksyi snlgydctik
      181 sksaplklnv lhlrhlqnan pketlasfes deadplvakv sgtamvtiri egmhcrscvr
      241 niegnlsdlp giqsikvsle hkravvqysp nlitlsalqq aieslppgnf kvcllngsev
      301 nkgaspspal lcdffreplq gttctaviri dgmtcnscvq siegtisqrr gvqhievsla
      361 grtgtihynp avtngeelra aiedmgfdas vltdtttger rhqtdtsnaa vqpqapeppr
      421 qgcasdalpd spqldepnhp gretaekcfl qitgmtcasc vstiernlqk edgivsvlva
      481 lmsgkaeiky kpefiqplei aqliqnlgfe atviedhaet egnvellitg mtcascvhni
      541 esklmrtngi fyasvalatc kahiqfdpei tgprdiikii eeigfhasva rrvpnahnld
      601 hkkeiqqwrk sflcsllfgv pvlilmiyml ipddehrgsm vlernlipgl silnllffil
      661 ctfvqflggw yfyvqayksl khktanmdvl iilattiayv yscvilmvai iekaekspvt
      721 ffdtppmlfv fialgrwleh iaksktseal aklislqate atvvtlgpdh sivreeqvav
      781 elvqrgdivk vvpggkfpvd gkviegssma deslitgeam pvtkkpgstv iagsinahgs
      841 vlvnathvgn dttlaqivkl veeaqmskap iqqladkfsg yfvpfiiiis tvtlivwiai
      901 gfinfdviqk yfpnqnkhvs kaelilrfaf qtsitvlsia cpcslglatp tavmvgtgva
      961 aqngilikgg kplemahkik tvmfdktgti tcgvpkvmrv lllgdmavls lkkvlavvgt
     1021 aeassehplg vavtkycree lgtqnlgyct dfqavpgcgi sckvggvgav lgtaeegldk
     1081 ldtnrsrdss aclgdnalit lskshgpsts htysvlignr ewmrrnglhi andvndamtd
     1141 hetkgqtail vaidgvlcam iaiadtvkqe aalavhtlkn mgidvvlitg dnrktakaia
     1201 tqvgikkvfa evlpshkvak vqelqngkrk vamvgdgvnd spalaradvg iaigtgtdva
     1261 ieaadvvlir ndlldvvasi hlskrivrri rvnlilaliy nllgipiaag vfmpvglvlq
     1321 pwmgsaamaa ssvsvvlssl qlkcykkpds esyeaqaqgc mkpltpsqis vhigmddrkr
     1381 dssrpalwdq isqvslsalt sdklqrrngl deeegdkwsl lmngrdeeqy i
//
LOCUS       XP_053908217            1425 aa            linear   VRT 09-MAR-2023
DEFINITION  copper-transporting ATPase 2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053908217
VERSION     XP_053908217.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052242.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1425
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1425
                     /product="copper-transporting ATPase 2 isoform X4"
                     /calculated_mol_wt=154342
     Region          129..191
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(135..137,140)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          214..277
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(220..222,225)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          326..384
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(332..334,337)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          424..492
                     /region_name="CopZ"
                     /note="Copper chaperone CopZ [Inorganic ion transport and
                     metabolism]; COG2608"
                     /db_xref="CDD:442020"
     Region          549..611
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(554..556,559)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          624..687
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(630..632,635)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          709..1408
                     /region_name="P-type_ATPase_Cu-like"
                     /note="P-type heavy metal-transporting ATPase, similar to
                     human copper-transporting ATPases, ATP7A and ATP7B;
                     cd02094"
                     /db_xref="CDD:319783"
     Site            order(1040,1042,1399)
                     /site_type="other"
                     /note="putative Cu binding site [ion binding]"
                     /db_xref="CDD:319783"
     Site            order(1084..1086,1154,1216..1218,1248,1288..1290,1310,
                     1313,1316,1335,1338)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:319783"
     CDS             1..1425
                     /gene="ATP7B"
                     /coded_by="XM_054052242.1:207..4484"
                     /db_xref="GeneID:104066139"
ORIGIN      
        1 merkldnkmk relsclatln nknitlvsir kqqavhdvpe llitgekset espvkassnl
       61 qkeekllqsy smgmpevnti erqilsntds spdceveptm khnfafdnmg yeegfetaps
      121 pssqehtvtv nvvgmtcqsc vqsiegqisk vkgivgikvs leqnnaviky lqseispeqi
      181 cqeiqdigfd anvveekltt atvnlscsre avvklrvegm tcqscvtnie gnirklhgvv
      241 kvkvslgnqe aiiayypyii hpdelksyis nlgydctiks ksaplklnvl hlrhlqnanp
      301 ketlasfesd eadplvakvs gtamvtirie gmhcrscvrn iegnlsdlpg iqsikvsleh
      361 kravvqyspn litlsalqqa ieslppgnfk vcllngsevn kgaspspall cdffreplqg
      421 ttctavirid gmtcnscvqs iegtisqrrg vqhievslag rtgtihynpa vtngeelraa
      481 iedmgfdasv ltdtttgerr hqtdtsnaav qpqapepprq gcasdalpds pqldepnhpg
      541 retaekcflq itgmtcascv stiernlqke dgivsvlval msgkaeikyk pefiqpleia
      601 qliqnlgfea tviedhaete gnvellitgm tcascvhnie sklmrtngif yasvalatck
      661 ahiqfdpeit gprdiikiie eigfhasvar rvpnahnldh kkeiqqwrks flcsllfgvp
      721 vlilmiymli pddehrgsmv lernlipgls ilnllffilc tfvqflggwy fyvqaykslk
      781 hktanmdvli ilattiayvy scvilmvaii ekaekspvtf fdtppmlfvf ialgrwlehi
      841 aksktseala klislqatea tvvtlgpdhs ivreeqvave lvqrgdivkv vpggkfpvdg
      901 kviegssmad eslitgeamp vtkkpgstvi agsinahgsv lvnathvgnd ttlaqivklv
      961 eeaqmskapi qqladkfsgy fvpfiiiist vtlivwiaig finfdviqky fpnqnkhvsk
     1021 aelilrfafq tsitvlsiac pcslglatpt avmvgtgvaa qngilikggk plemahkikt
     1081 vmfdktgtit cgvpkvmrvl llgdmavlsl kkvlavvgta eassehplgv avtkycreel
     1141 gtqnlgyctd fqavpgcgis ckvggvgavl gtaeegldkl dtnrsrdssa clgdnalitl
     1201 skshgpstsh tysvlignre wmrrnglhia ndvndamtdh etkgqtailv aidgvlcami
     1261 aiadtvkqea alavhtlknm gidvvlitgd nrktakaiat qvgikkvfae vlpshkvakv
     1321 qelqngkrkv amvgdgvnds palaradvgi aigtgtdvai eaadvvlirn dlldvvasih
     1381 lskrivrrir vnlilaliyn llgipiaavi rsqtqkvmkh klkaa
//
LOCUS       XP_009558809             201 aa            linear   VRT 09-MAR-2023
DEFINITION  WASH complex subunit 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_009558809
VERSION     XP_009558809.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560514.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..201
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..201
                     /product="WASH complex subunit 3 isoform X1"
                     /calculated_mol_wt=21799
     Region          30..174
                     /region_name="CCDC53"
                     /note="Subunit CCDC53 of WASH complex; pfam10152"
                     /db_xref="CDD:462967"
     CDS             1..201
                     /gene="WASHC3"
                     /coded_by="XM_009560514.2:97..702"
                     /db_xref="GeneID:104058928"
ORIGIN      
        1 mdedglpivg sgidltkvpa iqqkrtvafl nqfvvhtvqf lnrfstvcee klsalslriq
       61 qiettlnild aklssipgle dvkfevsnan mnsvtndpva qattdqqtav spqsgqnnvh
      121 eegllkteiv tenvrtvakd pryarylkmv qvgvpvmair nkmiseglnp dlletpdapv
      181 pawgddgkae dssdsessfs d
//
LOCUS       XP_009558810             200 aa            linear   VRT 09-MAR-2023
DEFINITION  WASH complex subunit 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_009558810
VERSION     XP_009558810.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560515.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..200
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..200
                     /product="WASH complex subunit 3 isoform X2"
                     /calculated_mol_wt=21670
     Region          30..173
                     /region_name="CCDC53"
                     /note="Subunit CCDC53 of WASH complex; pfam10152"
                     /db_xref="CDD:462967"
     CDS             1..200
                     /gene="WASHC3"
                     /coded_by="XM_009560515.2:97..699"
                     /db_xref="GeneID:104058928"
ORIGIN      
        1 mdedglpivg sgidltkvpa iqqkrtvafl nqfvvhtvqf lnrfstvcee klsalslriq
       61 qiettlnild aklssipgle dvkfevsnan mnsvtndpva qattdqqtav spqsgnnvhe
      121 egllkteivt envrtvakdp ryarylkmvq vgvpvmairn kmiseglnpd lletpdapvp
      181 awgddgkaed ssdsessfsd
//
LOCUS       XP_053908244             182 aa            linear   VRT 09-MAR-2023
DEFINITION  WASH complex subunit 3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053908244
VERSION     XP_053908244.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052269.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..182
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..182
                     /product="WASH complex subunit 3 isoform X3"
                     /calculated_mol_wt=19900
     Region          30..174
                     /region_name="CCDC53"
                     /note="Subunit CCDC53 of WASH complex; pfam10152"
                     /db_xref="CDD:462967"
     CDS             1..182
                     /gene="WASHC3"
                     /coded_by="XM_054052269.1:97..645"
                     /db_xref="GeneID:104058928"
ORIGIN      
        1 mdedglpivg sgidltkvpa iqqkrtvafl nqfvvhtvqf lnrfstvcee klsalslriq
       61 qiettlnild aklssipgle dvkfevsnan mnsvtndpva qattdqqtav spqsgqnnvh
      121 eegllkteiv tenvrtvakd pryarylkmv qvgvpvmair nkmiseglnp dllervcpal
      181 vn
//
LOCUS       XP_053908252             316 aa            linear   VRT 09-MAR-2023
DEFINITION  ester hydrolase C11orf54 homolog [Cuculus canorus].
ACCESSION   XP_053908252
VERSION     XP_053908252.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052277.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..316
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..316
                     /product="ester hydrolase C11orf54 homolog"
                     /calculated_mol_wt=34612
     Region          15..305
                     /region_name="DUF1907"
                     /note="proteins similar to putative ester hydrolase
                     C11orf54/PTD012; cd17298"
                     /db_xref="CDD:341210"
     Site            order(99..100,111,158,220,267,269,279)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:341210"
     CDS             1..316
                     /gene="C1H11orf54"
                     /coded_by="XM_054052277.1:740..1690"
                     /db_xref="GeneID:104064092"
ORIGIN      
        1 makverfafh vpsleelagv lqkglkenfa daevsvvdcp dltqepfnfp akgicgkpri
       61 advggvpyli pvvqkeklyd lnrvakdiel pgafilgaga assktvgvna elipivqtks
      121 ekkaavngsy iaqinpadkg cllekyssky tdcefgllan lyasegkpgk vievkasgrt
      181 gelnfvsclr qilekhygek pvgmggtfii ekgkakihvm ppefsacpln tdedvnnwlk
      241 ffemkaplic qpvivsrdpg fdlrlehthc fshhgegghy hqdtspdsvr yrgyflpael
      301 lfridkplet hlvgrd
//
LOCUS       XP_053908259             316 aa            linear   VRT 09-MAR-2023
DEFINITION  ester hydrolase C11orf54 homolog [Cuculus canorus].
ACCESSION   XP_053908259
VERSION     XP_053908259.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052284.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..316
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..316
                     /product="ester hydrolase C11orf54 homolog"
                     /calculated_mol_wt=34612
     Region          15..305
                     /region_name="DUF1907"
                     /note="proteins similar to putative ester hydrolase
                     C11orf54/PTD012; cd17298"
                     /db_xref="CDD:341210"
     Site            order(99..100,111,158,220,267,269,279)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:341210"
     CDS             1..316
                     /gene="C1H11orf54"
                     /coded_by="XM_054052284.1:786..1736"
                     /db_xref="GeneID:104064092"
ORIGIN      
        1 makverfafh vpsleelagv lqkglkenfa daevsvvdcp dltqepfnfp akgicgkpri
       61 advggvpyli pvvqkeklyd lnrvakdiel pgafilgaga assktvgvna elipivqtks
      121 ekkaavngsy iaqinpadkg cllekyssky tdcefgllan lyasegkpgk vievkasgrt
      181 gelnfvsclr qilekhygek pvgmggtfii ekgkakihvm ppefsacpln tdedvnnwlk
      241 ffemkaplic qpvivsrdpg fdlrlehthc fshhgegghy hqdtspdsvr yrgyflpael
      301 lfridkplet hlvgrd
//
LOCUS       XP_053908266             316 aa            linear   VRT 09-MAR-2023
DEFINITION  ester hydrolase C11orf54 homolog [Cuculus canorus].
ACCESSION   XP_053908266
VERSION     XP_053908266.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052291.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..316
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..316
                     /product="ester hydrolase C11orf54 homolog"
                     /calculated_mol_wt=34612
     Region          15..305
                     /region_name="DUF1907"
                     /note="proteins similar to putative ester hydrolase
                     C11orf54/PTD012; cd17298"
                     /db_xref="CDD:341210"
     Site            order(99..100,111,158,220,267,269,279)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:341210"
     CDS             1..316
                     /gene="C1H11orf54"
                     /coded_by="XM_054052291.1:98..1048"
                     /db_xref="GeneID:104064092"
ORIGIN      
        1 makverfafh vpsleelagv lqkglkenfa daevsvvdcp dltqepfnfp akgicgkpri
       61 advggvpyli pvvqkeklyd lnrvakdiel pgafilgaga assktvgvna elipivqtks
      121 ekkaavngsy iaqinpadkg cllekyssky tdcefgllan lyasegkpgk vievkasgrt
      181 gelnfvsclr qilekhygek pvgmggtfii ekgkakihvm ppefsacpln tdedvnnwlk
      241 ffemkaplic qpvivsrdpg fdlrlehthc fshhgegghy hqdtspdsvr yrgyflpael
      301 lfridkplet hlvgrd
//
LOCUS       XP_053908274             316 aa            linear   VRT 09-MAR-2023
DEFINITION  ester hydrolase C11orf54 homolog [Cuculus canorus].
ACCESSION   XP_053908274
VERSION     XP_053908274.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052299.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..316
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..316
                     /product="ester hydrolase C11orf54 homolog"
                     /calculated_mol_wt=34612
     Region          15..305
                     /region_name="DUF1907"
                     /note="proteins similar to putative ester hydrolase
                     C11orf54/PTD012; cd17298"
                     /db_xref="CDD:341210"
     Site            order(99..100,111,158,220,267,269,279)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:341210"
     CDS             1..316
                     /gene="C1H11orf54"
                     /coded_by="XM_054052299.1:1492..2442"
                     /db_xref="GeneID:104064092"
ORIGIN      
        1 makverfafh vpsleelagv lqkglkenfa daevsvvdcp dltqepfnfp akgicgkpri
       61 advggvpyli pvvqkeklyd lnrvakdiel pgafilgaga assktvgvna elipivqtks
      121 ekkaavngsy iaqinpadkg cllekyssky tdcefgllan lyasegkpgk vievkasgrt
      181 gelnfvsclr qilekhygek pvgmggtfii ekgkakihvm ppefsacpln tdedvnnwlk
      241 ffemkaplic qpvivsrdpg fdlrlehthc fshhgegghy hqdtspdsvr yrgyflpael
      301 lfridkplet hlvgrd
//
LOCUS       XP_053908282             316 aa            linear   VRT 09-MAR-2023
DEFINITION  ester hydrolase C11orf54 homolog [Cuculus canorus].
ACCESSION   XP_053908282
VERSION     XP_053908282.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052307.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..316
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..316
                     /product="ester hydrolase C11orf54 homolog"
                     /calculated_mol_wt=34612
     Region          15..305
                     /region_name="DUF1907"
                     /note="proteins similar to putative ester hydrolase
                     C11orf54/PTD012; cd17298"
                     /db_xref="CDD:341210"
     Site            order(99..100,111,158,220,267,269,279)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:341210"
     CDS             1..316
                     /gene="C1H11orf54"
                     /coded_by="XM_054052307.1:1340..2290"
                     /db_xref="GeneID:104064092"
ORIGIN      
        1 makverfafh vpsleelagv lqkglkenfa daevsvvdcp dltqepfnfp akgicgkpri
       61 advggvpyli pvvqkeklyd lnrvakdiel pgafilgaga assktvgvna elipivqtks
      121 ekkaavngsy iaqinpadkg cllekyssky tdcefgllan lyasegkpgk vievkasgrt
      181 gelnfvsclr qilekhygek pvgmggtfii ekgkakihvm ppefsacpln tdedvnnwlk
      241 ffemkaplic qpvivsrdpg fdlrlehthc fshhgegghy hqdtspdsvr yrgyflpael
      301 lfridkplet hlvgrd
//
LOCUS       XP_053908289             316 aa            linear   VRT 09-MAR-2023
DEFINITION  ester hydrolase C11orf54 homolog [Cuculus canorus].
ACCESSION   XP_053908289
VERSION     XP_053908289.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052314.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..316
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..316
                     /product="ester hydrolase C11orf54 homolog"
                     /calculated_mol_wt=34612
     Region          15..305
                     /region_name="DUF1907"
                     /note="proteins similar to putative ester hydrolase
                     C11orf54/PTD012; cd17298"
                     /db_xref="CDD:341210"
     Site            order(99..100,111,158,220,267,269,279)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:341210"
     CDS             1..316
                     /gene="C1H11orf54"
                     /coded_by="XM_054052314.1:1446..2396"
                     /db_xref="GeneID:104064092"
ORIGIN      
        1 makverfafh vpsleelagv lqkglkenfa daevsvvdcp dltqepfnfp akgicgkpri
       61 advggvpyli pvvqkeklyd lnrvakdiel pgafilgaga assktvgvna elipivqtks
      121 ekkaavngsy iaqinpadkg cllekyssky tdcefgllan lyasegkpgk vievkasgrt
      181 gelnfvsclr qilekhygek pvgmggtfii ekgkakihvm ppefsacpln tdedvnnwlk
      241 ffemkaplic qpvivsrdpg fdlrlehthc fshhgegghy hqdtspdsvr yrgyflpael
      301 lfridkplet hlvgrd
//
LOCUS       XP_053908298             316 aa            linear   VRT 09-MAR-2023
DEFINITION  ester hydrolase C11orf54 homolog [Cuculus canorus].
ACCESSION   XP_053908298
VERSION     XP_053908298.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052323.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..316
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..316
                     /product="ester hydrolase C11orf54 homolog"
                     /calculated_mol_wt=34612
     Region          15..305
                     /region_name="DUF1907"
                     /note="proteins similar to putative ester hydrolase
                     C11orf54/PTD012; cd17298"
                     /db_xref="CDD:341210"
     Site            order(99..100,111,158,220,267,269,279)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:341210"
     CDS             1..316
                     /gene="C1H11orf54"
                     /coded_by="XM_054052323.1:1386..2336"
                     /db_xref="GeneID:104064092"
ORIGIN      
        1 makverfafh vpsleelagv lqkglkenfa daevsvvdcp dltqepfnfp akgicgkpri
       61 advggvpyli pvvqkeklyd lnrvakdiel pgafilgaga assktvgvna elipivqtks
      121 ekkaavngsy iaqinpadkg cllekyssky tdcefgllan lyasegkpgk vievkasgrt
      181 gelnfvsclr qilekhygek pvgmggtfii ekgkakihvm ppefsacpln tdedvnnwlk
      241 ffemkaplic qpvivsrdpg fdlrlehthc fshhgegghy hqdtspdsvr yrgyflpael
      301 lfridkplet hlvgrd
//
LOCUS       XP_053908308             316 aa            linear   VRT 09-MAR-2023
DEFINITION  ester hydrolase C11orf54 homolog [Cuculus canorus].
ACCESSION   XP_053908308
VERSION     XP_053908308.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052333.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..316
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..316
                     /product="ester hydrolase C11orf54 homolog"
                     /calculated_mol_wt=34612
     Region          15..305
                     /region_name="DUF1907"
                     /note="proteins similar to putative ester hydrolase
                     C11orf54/PTD012; cd17298"
                     /db_xref="CDD:341210"
     Site            order(99..100,111,158,220,267,269,279)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:341210"
     CDS             1..316
                     /gene="C1H11orf54"
                     /coded_by="XM_054052333.1:147..1097"
                     /db_xref="GeneID:104064092"
ORIGIN      
        1 makverfafh vpsleelagv lqkglkenfa daevsvvdcp dltqepfnfp akgicgkpri
       61 advggvpyli pvvqkeklyd lnrvakdiel pgafilgaga assktvgvna elipivqtks
      121 ekkaavngsy iaqinpadkg cllekyssky tdcefgllan lyasegkpgk vievkasgrt
      181 gelnfvsclr qilekhygek pvgmggtfii ekgkakihvm ppefsacpln tdedvnnwlk
      241 ffemkaplic qpvivsrdpg fdlrlehthc fshhgegghy hqdtspdsvr yrgyflpael
      301 lfridkplet hlvgrd
//
LOCUS       XP_053908316             316 aa            linear   VRT 09-MAR-2023
DEFINITION  ester hydrolase C11orf54 homolog [Cuculus canorus].
ACCESSION   XP_053908316
VERSION     XP_053908316.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052341.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..316
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..316
                     /product="ester hydrolase C11orf54 homolog"
                     /calculated_mol_wt=34612
     Region          15..305
                     /region_name="DUF1907"
                     /note="proteins similar to putative ester hydrolase
                     C11orf54/PTD012; cd17298"
                     /db_xref="CDD:341210"
     Site            order(99..100,111,158,220,267,269,279)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:341210"
     CDS             1..316
                     /gene="C1H11orf54"
                     /coded_by="XM_054052341.1:138..1088"
                     /db_xref="GeneID:104064092"
ORIGIN      
        1 makverfafh vpsleelagv lqkglkenfa daevsvvdcp dltqepfnfp akgicgkpri
       61 advggvpyli pvvqkeklyd lnrvakdiel pgafilgaga assktvgvna elipivqtks
      121 ekkaavngsy iaqinpadkg cllekyssky tdcefgllan lyasegkpgk vievkasgrt
      181 gelnfvsclr qilekhygek pvgmggtfii ekgkakihvm ppefsacpln tdedvnnwlk
      241 ffemkaplic qpvivsrdpg fdlrlehthc fshhgegghy hqdtspdsvr yrgyflpael
      301 lfridkplet hlvgrd
//
LOCUS       XP_053908325            1186 aa            linear   VRT 09-MAR-2023
DEFINITION  bromodomain-containing protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053908325
VERSION     XP_053908325.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052350.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1186
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1186
                     /product="bromodomain-containing protein 1 isoform X1"
                     /calculated_mol_wt=134538
     Region          47..196
                     /region_name="EPL1"
                     /note="Enhancer of polycomb-like; pfam10513"
                     /db_xref="CDD:463128"
     Region          139..>576
                     /region_name="COG5141"
                     /note="PHD zinc finger-containing protein [General
                     function prediction only]"
                     /db_xref="CDD:227470"
     Region          271..388
                     /region_name="ePHD_BRPF2"
                     /note="Extended PHD finger found in bromodomain and PHD
                     finger-containing protein 2 (BRPF2) and similar proteins;
                     cd15702"
                     /db_xref="CDD:277172"
     Site            order(326,337..341,347,383)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277172"
     Region          566..663
                     /region_name="Bromo_brd1_like"
                     /note="Bromodomain; brd1_like subfamily. BRD1 is a
                     mammalian gene which encodes for a nuclear protein assumed
                     to be a transcriptional regulator. BRD1 has been
                     implicated with brain development and susceptibility to
                     schizophrenia and bipolar affective disorder; cd05512"
                     /db_xref="CDD:99944"
     Site            order(591,596,599,638,642,648)
                     /site_type="active"
                     /note="acetyllysine binding site [active]"
                     /db_xref="CDD:99944"
     Region          1055..1174
                     /region_name="PWWP_BRPF2"
                     /note="PWWP domain found in bromodomain and PHD
                     finger-containing protein 2 (BRPF2); cd20157"
                     /db_xref="CDD:438985"
     Site            order(1068,1071,1091..1093,1118..1119,1121,1123..1127)
                     /site_type="other"
                     /note="putative methyl-histone binding site [polypeptide
                     binding]"
                     /db_xref="CDD:438985"
     Site            1069..1072
                     /site_type="other"
                     /note="PWWP sequence motif"
                     /db_xref="CDD:438985"
     CDS             1..1186
                     /gene="BRD1"
                     /coded_by="XM_054052350.1:363..3923"
                     /db_xref="GeneID:104055272"
ORIGIN      
        1 mrrkgrchrv saarhssspc sikhsptret ltyaqaqrmv eieiegrlhr isifdpleii
       61 leddltaqem secnsnkens erppvclrsk rnknnkvkkk nealpsshgv patttplpep
      121 kvriveyspp saprrppvyy kfieksaeel dneveydmde edyawleiin ekrksdgvsv
      181 vsqnmfeflm drfekesyce nqkqgdhqsl idedavccic mdgecqnsnv ilfcdmcnla
      241 vhqecygvpy ipegqwlcrh clqsrsrpvd cvlcpnkgga fkktdddrwg hvvcalwipe
      301 vgfantvfie pidgvrnipp arwkltcylc kqkgvgaciq chkancytaf hvtcaqkagl
      361 ymkmepvkel tgsgttfsvk ktaycdvhtp pgctrrplni ygeaeikngv crkegsvrta
      421 rstskvrkkt kkakktvvep ctvmptvsap yippqrlnki mnqvaiqrkk qfvervhsyw
      481 llkrlsrngv pllrrlqssl qsqrntqqre ddeemqalke klkywqrlrh dlerarllie
      541 lirkreklkr eqvkieqvam elqltpftvl lrsvldqlqe kdsarifaqp vnlkevpdyl
      601 dhikhpmdfs tmrkrldaqg yknlsefeed fnliidncmk ynakdtifyr aavrlrdqgg
      661 vvlrqarrda egigynnetg mhlperpkle spqpfswedv drllnpvnra hmsleeqlre
      721 llekldltca mkssgsrskr akllkkeigi irnklsqqhn qapqietgig sfeeetaale
      781 qdgeeegdks ppklepsdal plpsnletns epptlkpvel npeqsklykr vkfdnelyst
      841 siqkeinght pehlldsnln estvsavaes stdvnrrtsi lfcksksisp qksakntetq
      901 ptspqlgtkt flsvvlprle tllhprkrsr sacgdsevdd espvkrldtg lsngfgdgsk
      961 eralddtpgr kveprrrcas essisssnsl lcnssfslpk cgkgkpalir rhtledrsel
     1021 isciengnya kaariaaevg hssmwistda atsvleplkv vwakcsgyps ypaliidpkm
     1081 prvaghhngv tipvppldvl kigeqmqtks deklflvlff dnrrswqwlp kskmvplgid
     1141 etidklkmme grnsgirkav riafdramnh lsrvhgepvs dfsdid
//
LOCUS       XP_053908333            1186 aa            linear   VRT 09-MAR-2023
DEFINITION  bromodomain-containing protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053908333
VERSION     XP_053908333.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052358.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1186
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1186
                     /product="bromodomain-containing protein 1 isoform X1"
                     /calculated_mol_wt=134538
     Region          47..196
                     /region_name="EPL1"
                     /note="Enhancer of polycomb-like; pfam10513"
                     /db_xref="CDD:463128"
     Region          139..>576
                     /region_name="COG5141"
                     /note="PHD zinc finger-containing protein [General
                     function prediction only]"
                     /db_xref="CDD:227470"
     Region          271..388
                     /region_name="ePHD_BRPF2"
                     /note="Extended PHD finger found in bromodomain and PHD
                     finger-containing protein 2 (BRPF2) and similar proteins;
                     cd15702"
                     /db_xref="CDD:277172"
     Site            order(326,337..341,347,383)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277172"
     Region          566..663
                     /region_name="Bromo_brd1_like"
                     /note="Bromodomain; brd1_like subfamily. BRD1 is a
                     mammalian gene which encodes for a nuclear protein assumed
                     to be a transcriptional regulator. BRD1 has been
                     implicated with brain development and susceptibility to
                     schizophrenia and bipolar affective disorder; cd05512"
                     /db_xref="CDD:99944"
     Site            order(591,596,599,638,642,648)
                     /site_type="active"
                     /note="acetyllysine binding site [active]"
                     /db_xref="CDD:99944"
     Region          1055..1174
                     /region_name="PWWP_BRPF2"
                     /note="PWWP domain found in bromodomain and PHD
                     finger-containing protein 2 (BRPF2); cd20157"
                     /db_xref="CDD:438985"
     Site            order(1068,1071,1091..1093,1118..1119,1121,1123..1127)
                     /site_type="other"
                     /note="putative methyl-histone binding site [polypeptide
                     binding]"
                     /db_xref="CDD:438985"
     Site            1069..1072
                     /site_type="other"
                     /note="PWWP sequence motif"
                     /db_xref="CDD:438985"
     CDS             1..1186
                     /gene="BRD1"
                     /coded_by="XM_054052358.1:5260..8820"
                     /db_xref="GeneID:104055272"
ORIGIN      
        1 mrrkgrchrv saarhssspc sikhsptret ltyaqaqrmv eieiegrlhr isifdpleii
       61 leddltaqem secnsnkens erppvclrsk rnknnkvkkk nealpsshgv patttplpep
      121 kvriveyspp saprrppvyy kfieksaeel dneveydmde edyawleiin ekrksdgvsv
      181 vsqnmfeflm drfekesyce nqkqgdhqsl idedavccic mdgecqnsnv ilfcdmcnla
      241 vhqecygvpy ipegqwlcrh clqsrsrpvd cvlcpnkgga fkktdddrwg hvvcalwipe
      301 vgfantvfie pidgvrnipp arwkltcylc kqkgvgaciq chkancytaf hvtcaqkagl
      361 ymkmepvkel tgsgttfsvk ktaycdvhtp pgctrrplni ygeaeikngv crkegsvrta
      421 rstskvrkkt kkakktvvep ctvmptvsap yippqrlnki mnqvaiqrkk qfvervhsyw
      481 llkrlsrngv pllrrlqssl qsqrntqqre ddeemqalke klkywqrlrh dlerarllie
      541 lirkreklkr eqvkieqvam elqltpftvl lrsvldqlqe kdsarifaqp vnlkevpdyl
      601 dhikhpmdfs tmrkrldaqg yknlsefeed fnliidncmk ynakdtifyr aavrlrdqgg
      661 vvlrqarrda egigynnetg mhlperpkle spqpfswedv drllnpvnra hmsleeqlre
      721 llekldltca mkssgsrskr akllkkeigi irnklsqqhn qapqietgig sfeeetaale
      781 qdgeeegdks ppklepsdal plpsnletns epptlkpvel npeqsklykr vkfdnelyst
      841 siqkeinght pehlldsnln estvsavaes stdvnrrtsi lfcksksisp qksakntetq
      901 ptspqlgtkt flsvvlprle tllhprkrsr sacgdsevdd espvkrldtg lsngfgdgsk
      961 eralddtpgr kveprrrcas essisssnsl lcnssfslpk cgkgkpalir rhtledrsel
     1021 isciengnya kaariaaevg hssmwistda atsvleplkv vwakcsgyps ypaliidpkm
     1081 prvaghhngv tipvppldvl kigeqmqtks deklflvlff dnrrswqwlp kskmvplgid
     1141 etidklkmme grnsgirkav riafdramnh lsrvhgepvs dfsdid
//
LOCUS       XP_053908341            1186 aa            linear   VRT 09-MAR-2023
DEFINITION  bromodomain-containing protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053908341
VERSION     XP_053908341.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052366.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1186
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1186
                     /product="bromodomain-containing protein 1 isoform X1"
                     /calculated_mol_wt=134538
     Region          47..196
                     /region_name="EPL1"
                     /note="Enhancer of polycomb-like; pfam10513"
                     /db_xref="CDD:463128"
     Region          139..>576
                     /region_name="COG5141"
                     /note="PHD zinc finger-containing protein [General
                     function prediction only]"
                     /db_xref="CDD:227470"
     Region          271..388
                     /region_name="ePHD_BRPF2"
                     /note="Extended PHD finger found in bromodomain and PHD
                     finger-containing protein 2 (BRPF2) and similar proteins;
                     cd15702"
                     /db_xref="CDD:277172"
     Site            order(326,337..341,347,383)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277172"
     Region          566..663
                     /region_name="Bromo_brd1_like"
                     /note="Bromodomain; brd1_like subfamily. BRD1 is a
                     mammalian gene which encodes for a nuclear protein assumed
                     to be a transcriptional regulator. BRD1 has been
                     implicated with brain development and susceptibility to
                     schizophrenia and bipolar affective disorder; cd05512"
                     /db_xref="CDD:99944"
     Site            order(591,596,599,638,642,648)
                     /site_type="active"
                     /note="acetyllysine binding site [active]"
                     /db_xref="CDD:99944"
     Region          1055..1174
                     /region_name="PWWP_BRPF2"
                     /note="PWWP domain found in bromodomain and PHD
                     finger-containing protein 2 (BRPF2); cd20157"
                     /db_xref="CDD:438985"
     Site            order(1068,1071,1091..1093,1118..1119,1121,1123..1127)
                     /site_type="other"
                     /note="putative methyl-histone binding site [polypeptide
                     binding]"
                     /db_xref="CDD:438985"
     Site            1069..1072
                     /site_type="other"
                     /note="PWWP sequence motif"
                     /db_xref="CDD:438985"
     CDS             1..1186
                     /gene="BRD1"
                     /coded_by="XM_054052366.1:4795..8355"
                     /db_xref="GeneID:104055272"
ORIGIN      
        1 mrrkgrchrv saarhssspc sikhsptret ltyaqaqrmv eieiegrlhr isifdpleii
       61 leddltaqem secnsnkens erppvclrsk rnknnkvkkk nealpsshgv patttplpep
      121 kvriveyspp saprrppvyy kfieksaeel dneveydmde edyawleiin ekrksdgvsv
      181 vsqnmfeflm drfekesyce nqkqgdhqsl idedavccic mdgecqnsnv ilfcdmcnla
      241 vhqecygvpy ipegqwlcrh clqsrsrpvd cvlcpnkgga fkktdddrwg hvvcalwipe
      301 vgfantvfie pidgvrnipp arwkltcylc kqkgvgaciq chkancytaf hvtcaqkagl
      361 ymkmepvkel tgsgttfsvk ktaycdvhtp pgctrrplni ygeaeikngv crkegsvrta
      421 rstskvrkkt kkakktvvep ctvmptvsap yippqrlnki mnqvaiqrkk qfvervhsyw
      481 llkrlsrngv pllrrlqssl qsqrntqqre ddeemqalke klkywqrlrh dlerarllie
      541 lirkreklkr eqvkieqvam elqltpftvl lrsvldqlqe kdsarifaqp vnlkevpdyl
      601 dhikhpmdfs tmrkrldaqg yknlsefeed fnliidncmk ynakdtifyr aavrlrdqgg
      661 vvlrqarrda egigynnetg mhlperpkle spqpfswedv drllnpvnra hmsleeqlre
      721 llekldltca mkssgsrskr akllkkeigi irnklsqqhn qapqietgig sfeeetaale
      781 qdgeeegdks ppklepsdal plpsnletns epptlkpvel npeqsklykr vkfdnelyst
      841 siqkeinght pehlldsnln estvsavaes stdvnrrtsi lfcksksisp qksakntetq
      901 ptspqlgtkt flsvvlprle tllhprkrsr sacgdsevdd espvkrldtg lsngfgdgsk
      961 eralddtpgr kveprrrcas essisssnsl lcnssfslpk cgkgkpalir rhtledrsel
     1021 isciengnya kaariaaevg hssmwistda atsvleplkv vwakcsgyps ypaliidpkm
     1081 prvaghhngv tipvppldvl kigeqmqtks deklflvlff dnrrswqwlp kskmvplgid
     1141 etidklkmme grnsgirkav riafdramnh lsrvhgepvs dfsdid
//
LOCUS       XP_053908350            1186 aa            linear   VRT 09-MAR-2023
DEFINITION  bromodomain-containing protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053908350
VERSION     XP_053908350.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052375.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1186
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1186
                     /product="bromodomain-containing protein 1 isoform X1"
                     /calculated_mol_wt=134538
     Region          47..196
                     /region_name="EPL1"
                     /note="Enhancer of polycomb-like; pfam10513"
                     /db_xref="CDD:463128"
     Region          139..>576
                     /region_name="COG5141"
                     /note="PHD zinc finger-containing protein [General
                     function prediction only]"
                     /db_xref="CDD:227470"
     Region          271..388
                     /region_name="ePHD_BRPF2"
                     /note="Extended PHD finger found in bromodomain and PHD
                     finger-containing protein 2 (BRPF2) and similar proteins;
                     cd15702"
                     /db_xref="CDD:277172"
     Site            order(326,337..341,347,383)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277172"
     Region          566..663
                     /region_name="Bromo_brd1_like"
                     /note="Bromodomain; brd1_like subfamily. BRD1 is a
                     mammalian gene which encodes for a nuclear protein assumed
                     to be a transcriptional regulator. BRD1 has been
                     implicated with brain development and susceptibility to
                     schizophrenia and bipolar affective disorder; cd05512"
                     /db_xref="CDD:99944"
     Site            order(591,596,599,638,642,648)
                     /site_type="active"
                     /note="acetyllysine binding site [active]"
                     /db_xref="CDD:99944"
     Region          1055..1174
                     /region_name="PWWP_BRPF2"
                     /note="PWWP domain found in bromodomain and PHD
                     finger-containing protein 2 (BRPF2); cd20157"
                     /db_xref="CDD:438985"
     Site            order(1068,1071,1091..1093,1118..1119,1121,1123..1127)
                     /site_type="other"
                     /note="putative methyl-histone binding site [polypeptide
                     binding]"
                     /db_xref="CDD:438985"
     Site            1069..1072
                     /site_type="other"
                     /note="PWWP sequence motif"
                     /db_xref="CDD:438985"
     CDS             1..1186
                     /gene="BRD1"
                     /coded_by="XM_054052375.1:5142..8702"
                     /db_xref="GeneID:104055272"
ORIGIN      
        1 mrrkgrchrv saarhssspc sikhsptret ltyaqaqrmv eieiegrlhr isifdpleii
       61 leddltaqem secnsnkens erppvclrsk rnknnkvkkk nealpsshgv patttplpep
      121 kvriveyspp saprrppvyy kfieksaeel dneveydmde edyawleiin ekrksdgvsv
      181 vsqnmfeflm drfekesyce nqkqgdhqsl idedavccic mdgecqnsnv ilfcdmcnla
      241 vhqecygvpy ipegqwlcrh clqsrsrpvd cvlcpnkgga fkktdddrwg hvvcalwipe
      301 vgfantvfie pidgvrnipp arwkltcylc kqkgvgaciq chkancytaf hvtcaqkagl
      361 ymkmepvkel tgsgttfsvk ktaycdvhtp pgctrrplni ygeaeikngv crkegsvrta
      421 rstskvrkkt kkakktvvep ctvmptvsap yippqrlnki mnqvaiqrkk qfvervhsyw
      481 llkrlsrngv pllrrlqssl qsqrntqqre ddeemqalke klkywqrlrh dlerarllie
      541 lirkreklkr eqvkieqvam elqltpftvl lrsvldqlqe kdsarifaqp vnlkevpdyl
      601 dhikhpmdfs tmrkrldaqg yknlsefeed fnliidncmk ynakdtifyr aavrlrdqgg
      661 vvlrqarrda egigynnetg mhlperpkle spqpfswedv drllnpvnra hmsleeqlre
      721 llekldltca mkssgsrskr akllkkeigi irnklsqqhn qapqietgig sfeeetaale
      781 qdgeeegdks ppklepsdal plpsnletns epptlkpvel npeqsklykr vkfdnelyst
      841 siqkeinght pehlldsnln estvsavaes stdvnrrtsi lfcksksisp qksakntetq
      901 ptspqlgtkt flsvvlprle tllhprkrsr sacgdsevdd espvkrldtg lsngfgdgsk
      961 eralddtpgr kveprrrcas essisssnsl lcnssfslpk cgkgkpalir rhtledrsel
     1021 isciengnya kaariaaevg hssmwistda atsvleplkv vwakcsgyps ypaliidpkm
     1081 prvaghhngv tipvppldvl kigeqmqtks deklflvlff dnrrswqwlp kskmvplgid
     1141 etidklkmme grnsgirkav riafdramnh lsrvhgepvs dfsdid
//
LOCUS       XP_053908357            1186 aa            linear   VRT 09-MAR-2023
DEFINITION  bromodomain-containing protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053908357
VERSION     XP_053908357.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052382.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1186
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1186
                     /product="bromodomain-containing protein 1 isoform X1"
                     /calculated_mol_wt=134538
     Region          47..196
                     /region_name="EPL1"
                     /note="Enhancer of polycomb-like; pfam10513"
                     /db_xref="CDD:463128"
     Region          139..>576
                     /region_name="COG5141"
                     /note="PHD zinc finger-containing protein [General
                     function prediction only]"
                     /db_xref="CDD:227470"
     Region          271..388
                     /region_name="ePHD_BRPF2"
                     /note="Extended PHD finger found in bromodomain and PHD
                     finger-containing protein 2 (BRPF2) and similar proteins;
                     cd15702"
                     /db_xref="CDD:277172"
     Site            order(326,337..341,347,383)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277172"
     Region          566..663
                     /region_name="Bromo_brd1_like"
                     /note="Bromodomain; brd1_like subfamily. BRD1 is a
                     mammalian gene which encodes for a nuclear protein assumed
                     to be a transcriptional regulator. BRD1 has been
                     implicated with brain development and susceptibility to
                     schizophrenia and bipolar affective disorder; cd05512"
                     /db_xref="CDD:99944"
     Site            order(591,596,599,638,642,648)
                     /site_type="active"
                     /note="acetyllysine binding site [active]"
                     /db_xref="CDD:99944"
     Region          1055..1174
                     /region_name="PWWP_BRPF2"
                     /note="PWWP domain found in bromodomain and PHD
                     finger-containing protein 2 (BRPF2); cd20157"
                     /db_xref="CDD:438985"
     Site            order(1068,1071,1091..1093,1118..1119,1121,1123..1127)
                     /site_type="other"
                     /note="putative methyl-histone binding site [polypeptide
                     binding]"
                     /db_xref="CDD:438985"
     Site            1069..1072
                     /site_type="other"
                     /note="PWWP sequence motif"
                     /db_xref="CDD:438985"
     CDS             1..1186
                     /gene="BRD1"
                     /coded_by="XM_054052382.1:2557..6117"
                     /db_xref="GeneID:104055272"
ORIGIN      
        1 mrrkgrchrv saarhssspc sikhsptret ltyaqaqrmv eieiegrlhr isifdpleii
       61 leddltaqem secnsnkens erppvclrsk rnknnkvkkk nealpsshgv patttplpep
      121 kvriveyspp saprrppvyy kfieksaeel dneveydmde edyawleiin ekrksdgvsv
      181 vsqnmfeflm drfekesyce nqkqgdhqsl idedavccic mdgecqnsnv ilfcdmcnla
      241 vhqecygvpy ipegqwlcrh clqsrsrpvd cvlcpnkgga fkktdddrwg hvvcalwipe
      301 vgfantvfie pidgvrnipp arwkltcylc kqkgvgaciq chkancytaf hvtcaqkagl
      361 ymkmepvkel tgsgttfsvk ktaycdvhtp pgctrrplni ygeaeikngv crkegsvrta
      421 rstskvrkkt kkakktvvep ctvmptvsap yippqrlnki mnqvaiqrkk qfvervhsyw
      481 llkrlsrngv pllrrlqssl qsqrntqqre ddeemqalke klkywqrlrh dlerarllie
      541 lirkreklkr eqvkieqvam elqltpftvl lrsvldqlqe kdsarifaqp vnlkevpdyl
      601 dhikhpmdfs tmrkrldaqg yknlsefeed fnliidncmk ynakdtifyr aavrlrdqgg
      661 vvlrqarrda egigynnetg mhlperpkle spqpfswedv drllnpvnra hmsleeqlre
      721 llekldltca mkssgsrskr akllkkeigi irnklsqqhn qapqietgig sfeeetaale
      781 qdgeeegdks ppklepsdal plpsnletns epptlkpvel npeqsklykr vkfdnelyst
      841 siqkeinght pehlldsnln estvsavaes stdvnrrtsi lfcksksisp qksakntetq
      901 ptspqlgtkt flsvvlprle tllhprkrsr sacgdsevdd espvkrldtg lsngfgdgsk
      961 eralddtpgr kveprrrcas essisssnsl lcnssfslpk cgkgkpalir rhtledrsel
     1021 isciengnya kaariaaevg hssmwistda atsvleplkv vwakcsgyps ypaliidpkm
     1081 prvaghhngv tipvppldvl kigeqmqtks deklflvlff dnrrswqwlp kskmvplgid
     1141 etidklkmme grnsgirkav riafdramnh lsrvhgepvs dfsdid
//
LOCUS       XP_053908366            1186 aa            linear   VRT 09-MAR-2023
DEFINITION  bromodomain-containing protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053908366
VERSION     XP_053908366.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052391.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1186
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1186
                     /product="bromodomain-containing protein 1 isoform X1"
                     /calculated_mol_wt=134538
     Region          47..196
                     /region_name="EPL1"
                     /note="Enhancer of polycomb-like; pfam10513"
                     /db_xref="CDD:463128"
     Region          139..>576
                     /region_name="COG5141"
                     /note="PHD zinc finger-containing protein [General
                     function prediction only]"
                     /db_xref="CDD:227470"
     Region          271..388
                     /region_name="ePHD_BRPF2"
                     /note="Extended PHD finger found in bromodomain and PHD
                     finger-containing protein 2 (BRPF2) and similar proteins;
                     cd15702"
                     /db_xref="CDD:277172"
     Site            order(326,337..341,347,383)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277172"
     Region          566..663
                     /region_name="Bromo_brd1_like"
                     /note="Bromodomain; brd1_like subfamily. BRD1 is a
                     mammalian gene which encodes for a nuclear protein assumed
                     to be a transcriptional regulator. BRD1 has been
                     implicated with brain development and susceptibility to
                     schizophrenia and bipolar affective disorder; cd05512"
                     /db_xref="CDD:99944"
     Site            order(591,596,599,638,642,648)
                     /site_type="active"
                     /note="acetyllysine binding site [active]"
                     /db_xref="CDD:99944"
     Region          1055..1174
                     /region_name="PWWP_BRPF2"
                     /note="PWWP domain found in bromodomain and PHD
                     finger-containing protein 2 (BRPF2); cd20157"
                     /db_xref="CDD:438985"
     Site            order(1068,1071,1091..1093,1118..1119,1121,1123..1127)
                     /site_type="other"
                     /note="putative methyl-histone binding site [polypeptide
                     binding]"
                     /db_xref="CDD:438985"
     Site            1069..1072
                     /site_type="other"
                     /note="PWWP sequence motif"
                     /db_xref="CDD:438985"
     CDS             1..1186
                     /gene="BRD1"
                     /coded_by="XM_054052391.1:2501..6061"
                     /db_xref="GeneID:104055272"
ORIGIN      
        1 mrrkgrchrv saarhssspc sikhsptret ltyaqaqrmv eieiegrlhr isifdpleii
       61 leddltaqem secnsnkens erppvclrsk rnknnkvkkk nealpsshgv patttplpep
      121 kvriveyspp saprrppvyy kfieksaeel dneveydmde edyawleiin ekrksdgvsv
      181 vsqnmfeflm drfekesyce nqkqgdhqsl idedavccic mdgecqnsnv ilfcdmcnla
      241 vhqecygvpy ipegqwlcrh clqsrsrpvd cvlcpnkgga fkktdddrwg hvvcalwipe
      301 vgfantvfie pidgvrnipp arwkltcylc kqkgvgaciq chkancytaf hvtcaqkagl
      361 ymkmepvkel tgsgttfsvk ktaycdvhtp pgctrrplni ygeaeikngv crkegsvrta
      421 rstskvrkkt kkakktvvep ctvmptvsap yippqrlnki mnqvaiqrkk qfvervhsyw
      481 llkrlsrngv pllrrlqssl qsqrntqqre ddeemqalke klkywqrlrh dlerarllie
      541 lirkreklkr eqvkieqvam elqltpftvl lrsvldqlqe kdsarifaqp vnlkevpdyl
      601 dhikhpmdfs tmrkrldaqg yknlsefeed fnliidncmk ynakdtifyr aavrlrdqgg
      661 vvlrqarrda egigynnetg mhlperpkle spqpfswedv drllnpvnra hmsleeqlre
      721 llekldltca mkssgsrskr akllkkeigi irnklsqqhn qapqietgig sfeeetaale
      781 qdgeeegdks ppklepsdal plpsnletns epptlkpvel npeqsklykr vkfdnelyst
      841 siqkeinght pehlldsnln estvsavaes stdvnrrtsi lfcksksisp qksakntetq
      901 ptspqlgtkt flsvvlprle tllhprkrsr sacgdsevdd espvkrldtg lsngfgdgsk
      961 eralddtpgr kveprrrcas essisssnsl lcnssfslpk cgkgkpalir rhtledrsel
     1021 isciengnya kaariaaevg hssmwistda atsvleplkv vwakcsgyps ypaliidpkm
     1081 prvaghhngv tipvppldvl kigeqmqtks deklflvlff dnrrswqwlp kskmvplgid
     1141 etidklkmme grnsgirkav riafdramnh lsrvhgepvs dfsdid
//
LOCUS       XP_053908372            1186 aa            linear   VRT 09-MAR-2023
DEFINITION  bromodomain-containing protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053908372
VERSION     XP_053908372.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052397.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1186
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1186
                     /product="bromodomain-containing protein 1 isoform X1"
                     /calculated_mol_wt=134538
     Region          47..196
                     /region_name="EPL1"
                     /note="Enhancer of polycomb-like; pfam10513"
                     /db_xref="CDD:463128"
     Region          139..>576
                     /region_name="COG5141"
                     /note="PHD zinc finger-containing protein [General
                     function prediction only]"
                     /db_xref="CDD:227470"
     Region          271..388
                     /region_name="ePHD_BRPF2"
                     /note="Extended PHD finger found in bromodomain and PHD
                     finger-containing protein 2 (BRPF2) and similar proteins;
                     cd15702"
                     /db_xref="CDD:277172"
     Site            order(326,337..341,347,383)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277172"
     Region          566..663
                     /region_name="Bromo_brd1_like"
                     /note="Bromodomain; brd1_like subfamily. BRD1 is a
                     mammalian gene which encodes for a nuclear protein assumed
                     to be a transcriptional regulator. BRD1 has been
                     implicated with brain development and susceptibility to
                     schizophrenia and bipolar affective disorder; cd05512"
                     /db_xref="CDD:99944"
     Site            order(591,596,599,638,642,648)
                     /site_type="active"
                     /note="acetyllysine binding site [active]"
                     /db_xref="CDD:99944"
     Region          1055..1174
                     /region_name="PWWP_BRPF2"
                     /note="PWWP domain found in bromodomain and PHD
                     finger-containing protein 2 (BRPF2); cd20157"
                     /db_xref="CDD:438985"
     Site            order(1068,1071,1091..1093,1118..1119,1121,1123..1127)
                     /site_type="other"
                     /note="putative methyl-histone binding site [polypeptide
                     binding]"
                     /db_xref="CDD:438985"
     Site            1069..1072
                     /site_type="other"
                     /note="PWWP sequence motif"
                     /db_xref="CDD:438985"
     CDS             1..1186
                     /gene="BRD1"
                     /coded_by="XM_054052397.1:4502..8062"
                     /db_xref="GeneID:104055272"
ORIGIN      
        1 mrrkgrchrv saarhssspc sikhsptret ltyaqaqrmv eieiegrlhr isifdpleii
       61 leddltaqem secnsnkens erppvclrsk rnknnkvkkk nealpsshgv patttplpep
      121 kvriveyspp saprrppvyy kfieksaeel dneveydmde edyawleiin ekrksdgvsv
      181 vsqnmfeflm drfekesyce nqkqgdhqsl idedavccic mdgecqnsnv ilfcdmcnla
      241 vhqecygvpy ipegqwlcrh clqsrsrpvd cvlcpnkgga fkktdddrwg hvvcalwipe
      301 vgfantvfie pidgvrnipp arwkltcylc kqkgvgaciq chkancytaf hvtcaqkagl
      361 ymkmepvkel tgsgttfsvk ktaycdvhtp pgctrrplni ygeaeikngv crkegsvrta
      421 rstskvrkkt kkakktvvep ctvmptvsap yippqrlnki mnqvaiqrkk qfvervhsyw
      481 llkrlsrngv pllrrlqssl qsqrntqqre ddeemqalke klkywqrlrh dlerarllie
      541 lirkreklkr eqvkieqvam elqltpftvl lrsvldqlqe kdsarifaqp vnlkevpdyl
      601 dhikhpmdfs tmrkrldaqg yknlsefeed fnliidncmk ynakdtifyr aavrlrdqgg
      661 vvlrqarrda egigynnetg mhlperpkle spqpfswedv drllnpvnra hmsleeqlre
      721 llekldltca mkssgsrskr akllkkeigi irnklsqqhn qapqietgig sfeeetaale
      781 qdgeeegdks ppklepsdal plpsnletns epptlkpvel npeqsklykr vkfdnelyst
      841 siqkeinght pehlldsnln estvsavaes stdvnrrtsi lfcksksisp qksakntetq
      901 ptspqlgtkt flsvvlprle tllhprkrsr sacgdsevdd espvkrldtg lsngfgdgsk
      961 eralddtpgr kveprrrcas essisssnsl lcnssfslpk cgkgkpalir rhtledrsel
     1021 isciengnya kaariaaevg hssmwistda atsvleplkv vwakcsgyps ypaliidpkm
     1081 prvaghhngv tipvppldvl kigeqmqtks deklflvlff dnrrswqwlp kskmvplgid
     1141 etidklkmme grnsgirkav riafdramnh lsrvhgepvs dfsdid
//
LOCUS       XP_053908383            1186 aa            linear   VRT 09-MAR-2023
DEFINITION  bromodomain-containing protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053908383
VERSION     XP_053908383.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052408.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1186
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1186
                     /product="bromodomain-containing protein 1 isoform X1"
                     /calculated_mol_wt=134538
     Region          47..196
                     /region_name="EPL1"
                     /note="Enhancer of polycomb-like; pfam10513"
                     /db_xref="CDD:463128"
     Region          139..>576
                     /region_name="COG5141"
                     /note="PHD zinc finger-containing protein [General
                     function prediction only]"
                     /db_xref="CDD:227470"
     Region          271..388
                     /region_name="ePHD_BRPF2"
                     /note="Extended PHD finger found in bromodomain and PHD
                     finger-containing protein 2 (BRPF2) and similar proteins;
                     cd15702"
                     /db_xref="CDD:277172"
     Site            order(326,337..341,347,383)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277172"
     Region          566..663
                     /region_name="Bromo_brd1_like"
                     /note="Bromodomain; brd1_like subfamily. BRD1 is a
                     mammalian gene which encodes for a nuclear protein assumed
                     to be a transcriptional regulator. BRD1 has been
                     implicated with brain development and susceptibility to
                     schizophrenia and bipolar affective disorder; cd05512"
                     /db_xref="CDD:99944"
     Site            order(591,596,599,638,642,648)
                     /site_type="active"
                     /note="acetyllysine binding site [active]"
                     /db_xref="CDD:99944"
     Region          1055..1174
                     /region_name="PWWP_BRPF2"
                     /note="PWWP domain found in bromodomain and PHD
                     finger-containing protein 2 (BRPF2); cd20157"
                     /db_xref="CDD:438985"
     Site            order(1068,1071,1091..1093,1118..1119,1121,1123..1127)
                     /site_type="other"
                     /note="putative methyl-histone binding site [polypeptide
                     binding]"
                     /db_xref="CDD:438985"
     Site            1069..1072
                     /site_type="other"
                     /note="PWWP sequence motif"
                     /db_xref="CDD:438985"
     CDS             1..1186
                     /gene="BRD1"
                     /coded_by="XM_054052408.1:2383..5943"
                     /db_xref="GeneID:104055272"
ORIGIN      
        1 mrrkgrchrv saarhssspc sikhsptret ltyaqaqrmv eieiegrlhr isifdpleii
       61 leddltaqem secnsnkens erppvclrsk rnknnkvkkk nealpsshgv patttplpep
      121 kvriveyspp saprrppvyy kfieksaeel dneveydmde edyawleiin ekrksdgvsv
      181 vsqnmfeflm drfekesyce nqkqgdhqsl idedavccic mdgecqnsnv ilfcdmcnla
      241 vhqecygvpy ipegqwlcrh clqsrsrpvd cvlcpnkgga fkktdddrwg hvvcalwipe
      301 vgfantvfie pidgvrnipp arwkltcylc kqkgvgaciq chkancytaf hvtcaqkagl
      361 ymkmepvkel tgsgttfsvk ktaycdvhtp pgctrrplni ygeaeikngv crkegsvrta
      421 rstskvrkkt kkakktvvep ctvmptvsap yippqrlnki mnqvaiqrkk qfvervhsyw
      481 llkrlsrngv pllrrlqssl qsqrntqqre ddeemqalke klkywqrlrh dlerarllie
      541 lirkreklkr eqvkieqvam elqltpftvl lrsvldqlqe kdsarifaqp vnlkevpdyl
      601 dhikhpmdfs tmrkrldaqg yknlsefeed fnliidncmk ynakdtifyr aavrlrdqgg
      661 vvlrqarrda egigynnetg mhlperpkle spqpfswedv drllnpvnra hmsleeqlre
      721 llekldltca mkssgsrskr akllkkeigi irnklsqqhn qapqietgig sfeeetaale
      781 qdgeeegdks ppklepsdal plpsnletns epptlkpvel npeqsklykr vkfdnelyst
      841 siqkeinght pehlldsnln estvsavaes stdvnrrtsi lfcksksisp qksakntetq
      901 ptspqlgtkt flsvvlprle tllhprkrsr sacgdsevdd espvkrldtg lsngfgdgsk
      961 eralddtpgr kveprrrcas essisssnsl lcnssfslpk cgkgkpalir rhtledrsel
     1021 isciengnya kaariaaevg hssmwistda atsvleplkv vwakcsgyps ypaliidpkm
     1081 prvaghhngv tipvppldvl kigeqmqtks deklflvlff dnrrswqwlp kskmvplgid
     1141 etidklkmme grnsgirkav riafdramnh lsrvhgepvs dfsdid
//
LOCUS       XP_053908391            1058 aa            linear   VRT 09-MAR-2023
DEFINITION  bromodomain-containing protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053908391
VERSION     XP_053908391.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052416.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1058
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1058
                     /product="bromodomain-containing protein 1 isoform X2"
                     /calculated_mol_wt=120506
     Region          47..196
                     /region_name="EPL1"
                     /note="Enhancer of polycomb-like; pfam10513"
                     /db_xref="CDD:463128"
     Region          139..>576
                     /region_name="COG5141"
                     /note="PHD zinc finger-containing protein [General
                     function prediction only]"
                     /db_xref="CDD:227470"
     Region          566..663
                     /region_name="Bromo_brd1_like"
                     /note="Bromodomain; brd1_like subfamily. BRD1 is a
                     mammalian gene which encodes for a nuclear protein assumed
                     to be a transcriptional regulator. BRD1 has been
                     implicated with brain development and susceptibility to
                     schizophrenia and bipolar affective disorder; cd05512"
                     /db_xref="CDD:99944"
     Site            order(591,596,599,638,642,648)
                     /site_type="active"
                     /note="acetyllysine binding site [active]"
                     /db_xref="CDD:99944"
     Region          927..1046
                     /region_name="PWWP_BRPF2"
                     /note="PWWP domain found in bromodomain and PHD
                     finger-containing protein 2 (BRPF2); cd20157"
                     /db_xref="CDD:438985"
     Site            order(940,943,963..965,990..991,993,995..999)
                     /site_type="other"
                     /note="putative methyl-histone binding site [polypeptide
                     binding]"
                     /db_xref="CDD:438985"
     Site            941..944
                     /site_type="other"
                     /note="PWWP sequence motif"
                     /db_xref="CDD:438985"
     CDS             1..1058
                     /gene="BRD1"
                     /coded_by="XM_054052416.1:364..3540"
                     /db_xref="GeneID:104055272"
ORIGIN      
        1 mrrkgrchrv saarhssspc sikhsptret ltyaqaqrmv eieiegrlhr isifdpleii
       61 leddltaqem secnsnkens erppvclrsk rnknnkvkkk nealpsshgv patttplpep
      121 kvriveyspp saprrppvyy kfieksaeel dneveydmde edyawleiin ekrksdgvsv
      181 vsqnmfeflm drfekesyce nqkqgdhqsl idedavccic mdgecqnsnv ilfcdmcnla
      241 vhqecygvpy ipegqwlcrh clqsrsrpvd cvlcpnkgga fkktdddrwg hvvcalwipe
      301 vgfantvfie pidgvrnipp arwkltcylc kqkgvgaciq chkancytaf hvtcaqkagl
      361 ymkmepvkel tgsgttfsvk ktaycdvhtp pgctrrplni ygeaeikngv crkegsvrta
      421 rstskvrkkt kkakktvvep ctvmptvsap yippqrlnki mnqvaiqrkk qfvervhsyw
      481 llkrlsrngv pllrrlqssl qsqrntqqre ddeemqalke klkywqrlrh dlerarllie
      541 lirkreklkr eqvkieqvam elqltpftvl lrsvldqlqe kdsarifaqp vnlkevpdyl
      601 dhikhpmdfs tmrkrldaqg yknlsefeed fnliidncmk ynakdtifyr aavrlrdqgg
      661 vvlrqarrda egigynnetg mhlperpkle spqpfswedv drllnpvnra hmsleeqlre
      721 llekldltca mkssgsrskr akllkkeigi irnklsqqhn qapqietgig sfeeetaale
      781 qdgeeevlpr letllhprkr srsacgdsev ddespvkrld tglsngfgdg skeralddtp
      841 grkveprrrc asessisssn sllcnssfsl pkcgkgkpal irrhtledrs elisciengn
      901 yakaariaae vghssmwist daatsvlepl kvvwakcsgy psypaliidp kmprvaghhn
      961 gvtipvppld vlkigeqmqt ksdeklflvl ffdnrrswqw lpkskmvplg idetidklkm
     1021 megrnsgirk avriafdram nhlsrvhgep vsdfsdid
//
LOCUS       XP_053908398            1050 aa            linear   VRT 09-MAR-2023
DEFINITION  bromodomain-containing protein 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053908398
VERSION     XP_053908398.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052423.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1050
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1050
                     /product="bromodomain-containing protein 1 isoform X3"
                     /calculated_mol_wt=119174
     Region          47..196
                     /region_name="EPL1"
                     /note="Enhancer of polycomb-like; pfam10513"
                     /db_xref="CDD:463128"
     Region          139..>576
                     /region_name="COG5141"
                     /note="PHD zinc finger-containing protein [General
                     function prediction only]"
                     /db_xref="CDD:227470"
     Region          271..388
                     /region_name="ePHD_BRPF2"
                     /note="Extended PHD finger found in bromodomain and PHD
                     finger-containing protein 2 (BRPF2) and similar proteins;
                     cd15702"
                     /db_xref="CDD:277172"
     Site            order(326,337..341,347,383)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277172"
     Region          566..663
                     /region_name="Bromo_brd1_like"
                     /note="Bromodomain; brd1_like subfamily. BRD1 is a
                     mammalian gene which encodes for a nuclear protein assumed
                     to be a transcriptional regulator. BRD1 has been
                     implicated with brain development and susceptibility to
                     schizophrenia and bipolar affective disorder; cd05512"
                     /db_xref="CDD:99944"
     Site            order(591,596,599,638,642,648)
                     /site_type="active"
                     /note="acetyllysine binding site [active]"
                     /db_xref="CDD:99944"
     CDS             1..1050
                     /gene="BRD1"
                     /coded_by="XM_054052423.1:369..3521"
                     /db_xref="GeneID:104055272"
ORIGIN      
        1 mrrkgrchrv saarhssspc sikhsptret ltyaqaqrmv eieiegrlhr isifdpleii
       61 leddltaqem secnsnkens erppvclrsk rnknnkvkkk nealpsshgv patttplpep
      121 kvriveyspp saprrppvyy kfieksaeel dneveydmde edyawleiin ekrksdgvsv
      181 vsqnmfeflm drfekesyce nqkqgdhqsl idedavccic mdgecqnsnv ilfcdmcnla
      241 vhqecygvpy ipegqwlcrh clqsrsrpvd cvlcpnkgga fkktdddrwg hvvcalwipe
      301 vgfantvfie pidgvrnipp arwkltcylc kqkgvgaciq chkancytaf hvtcaqkagl
      361 ymkmepvkel tgsgttfsvk ktaycdvhtp pgctrrplni ygeaeikngv crkegsvrta
      421 rstskvrkkt kkakktvvep ctvmptvsap yippqrlnki mnqvaiqrkk qfvervhsyw
      481 llkrlsrngv pllrrlqssl qsqrntqqre ddeemqalke klkywqrlrh dlerarllie
      541 lirkreklkr eqvkieqvam elqltpftvl lrsvldqlqe kdsarifaqp vnlkevpdyl
      601 dhikhpmdfs tmrkrldaqg yknlsefeed fnliidncmk ynakdtifyr aavrlrdqgg
      661 vvlrqarrda egigynnetg mhlperpkle spqpfswedv drllnpvnra hmsleeqlre
      721 llekldltca mkssgsrskr akllkkeigi irnklsqqhn qapqietgig sfeeetaale
      781 qdgeeegdks ppklepsdal plpsnletns epptlkpvel npeqsklykr vkfdnelyst
      841 siqkeinght pehlldsnln estvsavaes stdvnrrtsi lfcksksisp qksakntetq
      901 ptspqlgtkt flsvvlprle tllhprkrsr sacgdsevdd espvkrldtg lsngfgdgsk
      961 eralddtpgr kveprrrcas essisssnsl lcnssfslpk cgkgkpalir rhtledrsel
     1021 isciengnya kaariaagsg fpnpkwfplg
//
LOCUS       XP_053908406             954 aa            linear   VRT 09-MAR-2023
DEFINITION  bromodomain-containing protein 1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053908406
VERSION     XP_053908406.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052431.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..954
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..954
                     /product="bromodomain-containing protein 1 isoform X4"
                     /calculated_mol_wt=108904
     Region          47..196
                     /region_name="EPL1"
                     /note="Enhancer of polycomb-like; pfam10513"
                     /db_xref="CDD:463128"
     Region          139..>576
                     /region_name="COG5141"
                     /note="PHD zinc finger-containing protein [General
                     function prediction only]"
                     /db_xref="CDD:227470"
     Region          271..388
                     /region_name="ePHD_BRPF2"
                     /note="Extended PHD finger found in bromodomain and PHD
                     finger-containing protein 2 (BRPF2) and similar proteins;
                     cd15702"
                     /db_xref="CDD:277172"
     Site            order(326,337..341,347,383)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277172"
     Region          566..663
                     /region_name="Bromo_brd1_like"
                     /note="Bromodomain; brd1_like subfamily. BRD1 is a
                     mammalian gene which encodes for a nuclear protein assumed
                     to be a transcriptional regulator. BRD1 has been
                     implicated with brain development and susceptibility to
                     schizophrenia and bipolar affective disorder; cd05512"
                     /db_xref="CDD:99944"
     Site            order(591,596,599,638,642,648)
                     /site_type="active"
                     /note="acetyllysine binding site [active]"
                     /db_xref="CDD:99944"
     CDS             1..954
                     /gene="BRD1"
                     /coded_by="XM_054052431.1:372..3236"
                     /db_xref="GeneID:104055272"
ORIGIN      
        1 mrrkgrchrv saarhssspc sikhsptret ltyaqaqrmv eieiegrlhr isifdpleii
       61 leddltaqem secnsnkens erppvclrsk rnknnkvkkk nealpsshgv patttplpep
      121 kvriveyspp saprrppvyy kfieksaeel dneveydmde edyawleiin ekrksdgvsv
      181 vsqnmfeflm drfekesyce nqkqgdhqsl idedavccic mdgecqnsnv ilfcdmcnla
      241 vhqecygvpy ipegqwlcrh clqsrsrpvd cvlcpnkgga fkktdddrwg hvvcalwipe
      301 vgfantvfie pidgvrnipp arwkltcylc kqkgvgaciq chkancytaf hvtcaqkagl
      361 ymkmepvkel tgsgttfsvk ktaycdvhtp pgctrrplni ygeaeikngv crkegsvrta
      421 rstskvrkkt kkakktvvep ctvmptvsap yippqrlnki mnqvaiqrkk qfvervhsyw
      481 llkrlsrngv pllrrlqssl qsqrntqqre ddeemqalke klkywqrlrh dlerarllie
      541 lirkreklkr eqvkieqvam elqltpftvl lrsvldqlqe kdsarifaqp vnlkevpdyl
      601 dhikhpmdfs tmrkrldaqg yknlsefeed fnliidncmk ynakdtifyr aavrlrdqgg
      661 vvlrqarrda egigynnetg mhlperpkle spqpfswedv drllnpvnra hmsleeqlre
      721 llekldltca mkssgsrskr akllkkeigi irnklsqqhn qapqietgig sfeeetaale
      781 qdgeeegdks ppklepsdal plpsnletns epptlkpvel npeqsklykr vkfdnelyst
      841 siqkeinght pehlldsnln estvsavaes stdvnrrtsi lfcksksisp qksakntetq
      901 ptspqlgtkt flsvvlprle tllhprkrsr sacgdsevdd espvkrldtg shin
//
LOCUS       XP_053908409             369 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 12 [Cuculus canorus].
ACCESSION   XP_053908409
VERSION     XP_053908409.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052434.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..369
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..369
                     /product="ubiquitin carboxyl-terminal hydrolase 12"
                     /calculated_mol_wt=42448
     Region          40..366
                     /region_name="Peptidase_C19G"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02663"
                     /db_xref="CDD:239128"
     Site            order(43,48,316,332)
                     /site_type="active"
                     /db_xref="CDD:239128"
     CDS             1..369
                     /gene="USP12"
                     /coded_by="XM_054052434.1:136..1245"
                     /db_xref="GeneID:104064227"
ORIGIN      
        1 meilmtvski asictmgana salekeigpe qfpvdehyfg lvnfgntcyc nsvlqalyfc
       61 rpfrdkvlay rsqprkkenl ltcladlfhs iatqkkkvgv ippkkfitrl rkenelfdny
      121 mqqdahefln yllntvvdil qeegkqekqn gclpngnign enssppdptw vheifqgtlt
      181 netrcltcet itskdedfld lsvdveqnts ithclrgfsn tetlcseyky yceecrskqe
      241 ahkrmkikkl pmilalylkr fkymdqlhry tklsyrvvfp lelrlfntsg datnpdrmyd
      301 lvavvvhcgs gpnrghyiai vkshdfwllf dddivekida qaieefyglt sdisknsesg
      361 yilfyqsrd
//
LOCUS       XP_053908422             622 aa            linear   VRT 09-MAR-2023
DEFINITION  ecto-NOX disulfide-thiol exchanger 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053908422
VERSION     XP_053908422.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052447.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..622
                     /product="ecto-NOX disulfide-thiol exchanger 1 isoform X1"
                     /calculated_mol_wt=70657
     Region          115..198
                     /region_name="RRM_ENOX"
                     /note="RNA recognition motif (RRM) found in the cell
                     surface Ecto-NOX disulfide-thiol exchanger (ECTO-NOX or
                     ENOX) proteins; cd12228"
                     /db_xref="CDD:409675"
     Region          <292..>521
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..622
                     /gene="ENOX1"
                     /coded_by="XM_054052447.1:516..2384"
                     /db_xref="GeneID:104056512"
ORIGIN      
        1 maaaadglgs iaidttqlnm svtdptawat amnnlgmvpv glagqqlvtd sicvpgfdps
       61 lsmmtgitpi npmipgmglv pppptdvpvv keiihcksct lfppnpnlpp pstrerppgc
      121 ktvfvgglpe nateeiiqev feqcgditai rkskknfchi rfaeefmvdk aiylsgyrmr
      181 lgsstdkkds grlhvdfaqa rddfyeweck qrmlareerh rrkmeedrlr ppsppaimhy
      241 seheaallae klkddskfse aitvlltwie rgevnrrsan qfysmvqsan shvrrlmnek
      301 aaheqemeqa kesfknaltg iltqfeqiva vfnastrqka wdhfskaqrk nidiwrkhse
      361 elrnahseql mgirreeeme msdddsgdnp skklrvddsa laaqayalke endslrwqld
      421 ayrnevellk qekgqlfrte esltkdqqlq flqqtmqgmq qqllsiqeel nnkkseleqa
      481 keeqthtqam lkvlqeqlks akelaeingh desqaneinv ltvalvnqdr eknsekrspg
      541 lksekealli giistflhvh pfganieylw symqqldsri saneiemllm rlprmfkqef
      601 tgvgatlekr wkfcafegik tv
//
LOCUS       XP_053908430             622 aa            linear   VRT 09-MAR-2023
DEFINITION  ecto-NOX disulfide-thiol exchanger 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053908430
VERSION     XP_053908430.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052455.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..622
                     /product="ecto-NOX disulfide-thiol exchanger 1 isoform X1"
                     /calculated_mol_wt=70657
     Region          115..198
                     /region_name="RRM_ENOX"
                     /note="RNA recognition motif (RRM) found in the cell
                     surface Ecto-NOX disulfide-thiol exchanger (ECTO-NOX or
                     ENOX) proteins; cd12228"
                     /db_xref="CDD:409675"
     Region          <292..>521
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..622
                     /gene="ENOX1"
                     /coded_by="XM_054052455.1:627..2495"
                     /db_xref="GeneID:104056512"
ORIGIN      
        1 maaaadglgs iaidttqlnm svtdptawat amnnlgmvpv glagqqlvtd sicvpgfdps
       61 lsmmtgitpi npmipgmglv pppptdvpvv keiihcksct lfppnpnlpp pstrerppgc
      121 ktvfvgglpe nateeiiqev feqcgditai rkskknfchi rfaeefmvdk aiylsgyrmr
      181 lgsstdkkds grlhvdfaqa rddfyeweck qrmlareerh rrkmeedrlr ppsppaimhy
      241 seheaallae klkddskfse aitvlltwie rgevnrrsan qfysmvqsan shvrrlmnek
      301 aaheqemeqa kesfknaltg iltqfeqiva vfnastrqka wdhfskaqrk nidiwrkhse
      361 elrnahseql mgirreeeme msdddsgdnp skklrvddsa laaqayalke endslrwqld
      421 ayrnevellk qekgqlfrte esltkdqqlq flqqtmqgmq qqllsiqeel nnkkseleqa
      481 keeqthtqam lkvlqeqlks akelaeingh desqaneinv ltvalvnqdr eknsekrspg
      541 lksekealli giistflhvh pfganieylw symqqldsri saneiemllm rlprmfkqef
      601 tgvgatlekr wkfcafegik tv
//
LOCUS       XP_053908436             622 aa            linear   VRT 09-MAR-2023
DEFINITION  ecto-NOX disulfide-thiol exchanger 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053908436
VERSION     XP_053908436.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052461.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..622
                     /product="ecto-NOX disulfide-thiol exchanger 1 isoform X1"
                     /calculated_mol_wt=70657
     Region          115..198
                     /region_name="RRM_ENOX"
                     /note="RNA recognition motif (RRM) found in the cell
                     surface Ecto-NOX disulfide-thiol exchanger (ECTO-NOX or
                     ENOX) proteins; cd12228"
                     /db_xref="CDD:409675"
     Region          <292..>521
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..622
                     /gene="ENOX1"
                     /coded_by="XM_054052461.1:442..2310"
                     /db_xref="GeneID:104056512"
ORIGIN      
        1 maaaadglgs iaidttqlnm svtdptawat amnnlgmvpv glagqqlvtd sicvpgfdps
       61 lsmmtgitpi npmipgmglv pppptdvpvv keiihcksct lfppnpnlpp pstrerppgc
      121 ktvfvgglpe nateeiiqev feqcgditai rkskknfchi rfaeefmvdk aiylsgyrmr
      181 lgsstdkkds grlhvdfaqa rddfyeweck qrmlareerh rrkmeedrlr ppsppaimhy
      241 seheaallae klkddskfse aitvlltwie rgevnrrsan qfysmvqsan shvrrlmnek
      301 aaheqemeqa kesfknaltg iltqfeqiva vfnastrqka wdhfskaqrk nidiwrkhse
      361 elrnahseql mgirreeeme msdddsgdnp skklrvddsa laaqayalke endslrwqld
      421 ayrnevellk qekgqlfrte esltkdqqlq flqqtmqgmq qqllsiqeel nnkkseleqa
      481 keeqthtqam lkvlqeqlks akelaeingh desqaneinv ltvalvnqdr eknsekrspg
      541 lksekealli giistflhvh pfganieylw symqqldsri saneiemllm rlprmfkqef
      601 tgvgatlekr wkfcafegik tv
//
LOCUS       XP_009556065             622 aa            linear   VRT 09-MAR-2023
DEFINITION  ecto-NOX disulfide-thiol exchanger 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_009556065
VERSION     XP_009556065.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557770.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556065.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..622
                     /product="ecto-NOX disulfide-thiol exchanger 1 isoform X1"
                     /calculated_mol_wt=70657
     Region          115..198
                     /region_name="RRM_ENOX"
                     /note="RNA recognition motif (RRM) found in the cell
                     surface Ecto-NOX disulfide-thiol exchanger (ECTO-NOX or
                     ENOX) proteins; cd12228"
                     /db_xref="CDD:409675"
     Region          <292..>521
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..622
                     /gene="ENOX1"
                     /coded_by="XM_009557770.2:145..2013"
                     /db_xref="GeneID:104056512"
ORIGIN      
        1 maaaadglgs iaidttqlnm svtdptawat amnnlgmvpv glagqqlvtd sicvpgfdps
       61 lsmmtgitpi npmipgmglv pppptdvpvv keiihcksct lfppnpnlpp pstrerppgc
      121 ktvfvgglpe nateeiiqev feqcgditai rkskknfchi rfaeefmvdk aiylsgyrmr
      181 lgsstdkkds grlhvdfaqa rddfyeweck qrmlareerh rrkmeedrlr ppsppaimhy
      241 seheaallae klkddskfse aitvlltwie rgevnrrsan qfysmvqsan shvrrlmnek
      301 aaheqemeqa kesfknaltg iltqfeqiva vfnastrqka wdhfskaqrk nidiwrkhse
      361 elrnahseql mgirreeeme msdddsgdnp skklrvddsa laaqayalke endslrwqld
      421 ayrnevellk qekgqlfrte esltkdqqlq flqqtmqgmq qqllsiqeel nnkkseleqa
      481 keeqthtqam lkvlqeqlks akelaeingh desqaneinv ltvalvnqdr eknsekrspg
      541 lksekealli giistflhvh pfganieylw symqqldsri saneiemllm rlprmfkqef
      601 tgvgatlekr wkfcafegik tv
//
LOCUS       XP_053908454             603 aa            linear   VRT 09-MAR-2023
DEFINITION  ecto-NOX disulfide-thiol exchanger 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053908454
VERSION     XP_053908454.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052479.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..603
                     /product="ecto-NOX disulfide-thiol exchanger 1 isoform X2"
                     /calculated_mol_wt=68842
     Region          96..179
                     /region_name="RRM_ENOX"
                     /note="RNA recognition motif (RRM) found in the cell
                     surface Ecto-NOX disulfide-thiol exchanger (ECTO-NOX or
                     ENOX) proteins; cd12228"
                     /db_xref="CDD:409675"
     Region          <273..>502
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..603
                     /gene="ENOX1"
                     /coded_by="XM_054052479.1:586..2397"
                     /db_xref="GeneID:104056512"
ORIGIN      
        1 msvtdptawa tamnnlgmvp vglagqqlvt dsicvpgfdp slsmmtgitp inpmipgmgl
       61 vpppptdvpv vkeiihcksc tlfppnpnlp ppstrerppg cktvfvgglp enateeiiqe
      121 vfeqcgdita irkskknfch irfaeefmvd kaiylsgyrm rlgsstdkkd sgrlhvdfaq
      181 arddfyewec kqrmlareer hrrkmeedrl rppsppaimh yseheaalla eklkddskfs
      241 eaitvlltwi ergevnrrsa nqfysmvqsa nshvrrlmne kaaheqemeq akesfknalt
      301 giltqfeqiv avfnastrqk awdhfskaqr knidiwrkhs eelrnahseq lmgirreeem
      361 emsdddsgdn pskklrvdds alaaqayalk eendslrwql dayrnevell kqekgqlfrt
      421 eesltkdqql qflqqtmqgm qqqllsiqee lnnkkseleq akeeqthtqa mlkvlqeqlk
      481 sakelaeing hdesqanein vltvalvnqd reknsekrsp glksekeall igiistflhv
      541 hpfganieyl wsymqqldsr isaneiemll mrlprmfkqe ftgvgatlek rwkfcafegi
      601 ktv
//
LOCUS       XP_053908463             603 aa            linear   VRT 09-MAR-2023
DEFINITION  ecto-NOX disulfide-thiol exchanger 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053908463
VERSION     XP_053908463.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052488.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..603
                     /product="ecto-NOX disulfide-thiol exchanger 1 isoform X2"
                     /calculated_mol_wt=68842
     Region          96..179
                     /region_name="RRM_ENOX"
                     /note="RNA recognition motif (RRM) found in the cell
                     surface Ecto-NOX disulfide-thiol exchanger (ECTO-NOX or
                     ENOX) proteins; cd12228"
                     /db_xref="CDD:409675"
     Region          <273..>502
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..603
                     /gene="ENOX1"
                     /coded_by="XM_054052488.1:583..2394"
                     /db_xref="GeneID:104056512"
ORIGIN      
        1 msvtdptawa tamnnlgmvp vglagqqlvt dsicvpgfdp slsmmtgitp inpmipgmgl
       61 vpppptdvpv vkeiihcksc tlfppnpnlp ppstrerppg cktvfvgglp enateeiiqe
      121 vfeqcgdita irkskknfch irfaeefmvd kaiylsgyrm rlgsstdkkd sgrlhvdfaq
      181 arddfyewec kqrmlareer hrrkmeedrl rppsppaimh yseheaalla eklkddskfs
      241 eaitvlltwi ergevnrrsa nqfysmvqsa nshvrrlmne kaaheqemeq akesfknalt
      301 giltqfeqiv avfnastrqk awdhfskaqr knidiwrkhs eelrnahseq lmgirreeem
      361 emsdddsgdn pskklrvdds alaaqayalk eendslrwql dayrnevell kqekgqlfrt
      421 eesltkdqql qflqqtmqgm qqqllsiqee lnnkkseleq akeeqthtqa mlkvlqeqlk
      481 sakelaeing hdesqanein vltvalvnqd reknsekrsp glksekeall igiistflhv
      541 hpfganieyl wsymqqldsr isaneiemll mrlprmfkqe ftgvgatlek rwkfcafegi
      601 ktv
//
LOCUS       XP_053908470             603 aa            linear   VRT 09-MAR-2023
DEFINITION  ecto-NOX disulfide-thiol exchanger 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053908470
VERSION     XP_053908470.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052495.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..603
                     /product="ecto-NOX disulfide-thiol exchanger 1 isoform X3"
                     /calculated_mol_wt=68621
     Region          115..198
                     /region_name="RRM_ENOX"
                     /note="RNA recognition motif (RRM) found in the cell
                     surface Ecto-NOX disulfide-thiol exchanger (ECTO-NOX or
                     ENOX) proteins; cd12228"
                     /db_xref="CDD:409675"
     Region          <292..>497
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..603
                     /gene="ENOX1"
                     /coded_by="XM_054052495.1:517..2328"
                     /db_xref="GeneID:104056512"
ORIGIN      
        1 maaaadglgs iaidttqlnm svtdptawat amnnlgmvpv glagqqlvtd sicvpgfdps
       61 lsmmtgitpi npmipgmglv pppptdvpvv keiihcksct lfppnpnlpp pstrerppgc
      121 ktvfvgglpe nateeiiqev feqcgditai rkskknfchi rfaeefmvdk aiylsgyrmr
      181 lgsstdkkds grlhvdfaqa rddfyeweck qrmlareerh rrkmeedrlr ppsppaimhy
      241 seheaallae klkddskfse aitvlltwie rgevnrrsan qfysmvqsan shvrrlmnek
      301 aaheqemeqa kesfknaltg iltqfeqiva vfnastrqka wdhfskaqrk nidiwrkhse
      361 elrnahseql mgirreeeme msdddsgdnp skklrvddsa laaqayalke endslrwqld
      421 ayrnevellk qekgqlfrte esltkdqqlq flqqtmqgmq qqllsiqeel nnkkseleqa
      481 keeqthtqam lkvlqeqein vltvalvnqd reknsekrsp glksekeall igiistflhv
      541 hpfganieyl wsymqqldsr isaneiemll mrlprmfkqe ftgvgatlek rwkfcafegi
      601 ktv
//
LOCUS       XP_053908478             553 aa            linear   VRT 09-MAR-2023
DEFINITION  ecto-NOX disulfide-thiol exchanger 1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053908478
VERSION     XP_053908478.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052503.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..553
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..553
                     /product="ecto-NOX disulfide-thiol exchanger 1 isoform X4"
                     /calculated_mol_wt=62907
     Region          <108..129
                     /region_name="RRM_SF"
                     /note="RNA recognition motif (RRM) superfamily; cl17169"
                     /db_xref="CDD:473069"
     Region          <223..>452
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..553
                     /gene="ENOX1"
                     /coded_by="XM_054052503.1:517..2178"
                     /db_xref="GeneID:104056512"
ORIGIN      
        1 maaaadglgs iaidttqlnm svtdptawat amnnlgmvpv glagqqlvtd sicvpgfdps
       61 lsmmtgitpi npmipgmglv pppptdvpvv keiihcksct lfppnpsyrm rlgsstdkkd
      121 sgrlhvdfaq arddfyewec kqrmlareer hrrkmeedrl rppsppaimh yseheaalla
      181 eklkddskfs eaitvlltwi ergevnrrsa nqfysmvqsa nshvrrlmne kaaheqemeq
      241 akesfknalt giltqfeqiv avfnastrqk awdhfskaqr knidiwrkhs eelrnahseq
      301 lmgirreeem emsdddsgdn pskklrvdds alaaqayalk eendslrwql dayrnevell
      361 kqekgqlfrt eesltkdqql qflqqtmqgm qqqllsiqee lnnkkseleq akeeqthtqa
      421 mlkvlqeqlk sakelaeing hdesqanein vltvalvnqd reknsekrsp glksekeall
      481 igiistflhv hpfganieyl wsymqqldsr isaneiemll mrlprmfkqe ftgvgatlek
      541 rwkfcafegi ktv
//
LOCUS       XP_053908489             499 aa            linear   VRT 09-MAR-2023
DEFINITION  sugar phosphate exchanger 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053908489
VERSION     XP_053908489.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052514.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..499
                     /product="sugar phosphate exchanger 3 isoform X1"
                     /calculated_mol_wt=54480
     Region          24..478
                     /region_name="MFS_SLC37A3"
                     /note="Solute carrier family 37 member 3 of the Major
                     Facilitator Superfamily of transporters; cd17342"
                     /db_xref="CDD:340900"
     Site            order(38..39,42..43,46,105,161..162,164..166,169,189,
                     192..193,196,306,309..310,313..315,318,346,350,401..402,
                     406,410,434,437..438,441..442,445)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:340900"
     CDS             1..499
                     /gene="SLC37A3"
                     /coded_by="XM_054052514.1:255..1754"
                     /db_xref="GeneID:104058939"
ORIGIN      
        1 malpgslrrq panrglvshc thhhivvfll tffsysllha srktfsnvkv sissqwtpsc
       61 lnstapelqp yelwnsshlf pnaeeatlfl gtldtiflis yavglfvsgi igdrlnlrwv
      121 lsfgmcssal vvfffgtlte wlhfynkwfy cclwvvngll qstgwpcvva vmgnwfgkag
      181 rgfvfglwsa casvgnilga flascvlkyg yeyaflvtas vqfaggvivf fglltspkev
      241 glpelgadad gsveedanrp lmgdddaddd drnysiqaad tdsqpkaigf fqacclpgvv
      301 lyslayaclk lvnysfffwl pfylsnnfgw keaeadqlsi wydvggiigg tiqglisdvl
      361 qkrapvlais llfavgslfg ysrspnskpi nalimaitgf figgpsnmis saisadlgrq
      421 dlvkgsseal atvtgivdgt gsigaavgqy lvsliqenlg wmwvfyffil mvrnllclkf
      481 cvkvqfaier fcqslnivt
//
LOCUS       XP_053908498             499 aa            linear   VRT 09-MAR-2023
DEFINITION  sugar phosphate exchanger 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053908498
VERSION     XP_053908498.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052523.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..499
                     /product="sugar phosphate exchanger 3 isoform X1"
                     /calculated_mol_wt=54480
     Region          24..478
                     /region_name="MFS_SLC37A3"
                     /note="Solute carrier family 37 member 3 of the Major
                     Facilitator Superfamily of transporters; cd17342"
                     /db_xref="CDD:340900"
     Site            order(38..39,42..43,46,105,161..162,164..166,169,189,
                     192..193,196,306,309..310,313..315,318,346,350,401..402,
                     406,410,434,437..438,441..442,445)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:340900"
     CDS             1..499
                     /gene="SLC37A3"
                     /coded_by="XM_054052523.1:147..1646"
                     /db_xref="GeneID:104058939"
ORIGIN      
        1 malpgslrrq panrglvshc thhhivvfll tffsysllha srktfsnvkv sissqwtpsc
       61 lnstapelqp yelwnsshlf pnaeeatlfl gtldtiflis yavglfvsgi igdrlnlrwv
      121 lsfgmcssal vvfffgtlte wlhfynkwfy cclwvvngll qstgwpcvva vmgnwfgkag
      181 rgfvfglwsa casvgnilga flascvlkyg yeyaflvtas vqfaggvivf fglltspkev
      241 glpelgadad gsveedanrp lmgdddaddd drnysiqaad tdsqpkaigf fqacclpgvv
      301 lyslayaclk lvnysfffwl pfylsnnfgw keaeadqlsi wydvggiigg tiqglisdvl
      361 qkrapvlais llfavgslfg ysrspnskpi nalimaitgf figgpsnmis saisadlgrq
      421 dlvkgsseal atvtgivdgt gsigaavgqy lvsliqenlg wmwvfyffil mvrnllclkf
      481 cvkvqfaier fcqslnivt
//
LOCUS       XP_053908505             501 aa            linear   VRT 09-MAR-2023
DEFINITION  sugar phosphate exchanger 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053908505
VERSION     XP_053908505.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052530.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..501
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..501
                     /product="sugar phosphate exchanger 3 isoform X2"
                     /calculated_mol_wt=54670
     Region          24..483
                     /region_name="MFS_SLC37A3"
                     /note="Solute carrier family 37 member 3 of the Major
                     Facilitator Superfamily of transporters; cd17342"
                     /db_xref="CDD:340900"
     Site            order(38..39,42..43,46,105,161..162,164..166,169,189,
                     192..193,196,306,309..310,313..315,318,346,350,401..402,
                     406,410,434,437..438,441..442,445)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:340900"
     CDS             1..501
                     /gene="SLC37A3"
                     /coded_by="XM_054052530.1:258..1763"
                     /db_xref="GeneID:104058939"
ORIGIN      
        1 malpgslrrq panrglvshc thhhivvfll tffsysllha srktfsnvkv sissqwtpsc
       61 lnstapelqp yelwnsshlf pnaeeatlfl gtldtiflis yavglfvsgi igdrlnlrwv
      121 lsfgmcssal vvfffgtlte wlhfynkwfy cclwvvngll qstgwpcvva vmgnwfgkag
      181 rgfvfglwsa casvgnilga flascvlkyg yeyaflvtas vqfaggvivf fglltspkev
      241 glpelgadad gsveedanrp lmgdddaddd drnysiqaad tdsqpkaigf fqacclpgvv
      301 lyslayaclk lvnysfffwl pfylsnnfgw keaeadqlsi wydvggiigg tiqglisdvl
      361 qkrapvlais llfavgslfg ysrspnskpi nalimaitgf figgpsnmis saisadlgrq
      421 dlvkgsseal atvtgivdgt gsigaavgqy lvsliqenlg wmwvfyffil mtsstvlfis
      481 plivreirll lherslrlla e
//
LOCUS       XP_053908516             476 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase makorin-1 [Cuculus canorus].
ACCESSION   XP_053908516
VERSION     XP_053908516.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052541.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..476
                     /product="E3 ubiquitin-protein ligase makorin-1"
                     /calculated_mol_wt=53277
     Region          54..75
                     /region_name="zf-CCCH_4"
                     /note="CCCH-type zinc finger; pfam18044"
                     /db_xref="CDD:465626"
     Region          84..103
                     /region_name="zf-CCCH_4"
                     /note="CCCH-type zinc finger; pfam18044"
                     /db_xref="CDD:465626"
     Region          <215..364
                     /region_name="PHA03096"
                     /note="p28-like protein; Provisional"
                     /db_xref="CDD:222981"
     Region          272..332
                     /region_name="RING-HC_MKRN1_3"
                     /note="RING finger, HC subclass, found in makorin-1
                     (MKRN1), makorin-3 (MKRN3), and similar proteins; cd16730"
                     /db_xref="CDD:319644"
     Region          386..476
                     /region_name="MKRN1_C"
                     /note="E3 ubiquitin-protein ligase makorin, C-terminal;
                     pfam15815"
                     /db_xref="CDD:464890"
     CDS             1..476
                     /gene="MKRN1"
                     /coded_by="XM_054052541.1:118..1548"
                     /db_xref="GeneID:104058940"
ORIGIN      
        1 maeavalgtt agaaaaaaaa lgtpagaaaa aafdfaavpp pvvgpggggw tkqvtcryfm
       61 hgvckegenc ryshdlstsq samvcryyqr gccaygdrcr yehtkplkee emadvdpeek
      121 fyasvssdfm slpetveeii aeiededtdl aaagvdaedw vnavefipgq pycgraapsc
      181 aeaplqemvi eeeyqkeead vvikkelcpy aavgecryge ncvyihgdvc dmcglqvlhp
      241 idaaqrsehi kscieahekd melsfavqrs kdmvcgicme vvyekanpse rrfgilsncs
      301 htyclkcirk wrsakqfesk iikscpecri tsnfvipsey wveekeekqk liqkykeams
      361 nkpcryfdeg rgscpfggnc fykhaypdgr qeepqrpkvg tssrfraqrr nrfwefieer
      421 esgdpfetde devvtfelge mllmllaagg ddeltdsede wdlfhdeled yydldl
//
LOCUS       XP_053908527             214 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related protein Rab-19 [Cuculus canorus].
ACCESSION   XP_053908527
VERSION     XP_053908527.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052552.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..214
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..214
                     /product="ras-related protein Rab-19"
                     /calculated_mol_wt=24005
     Region          13..177
                     /region_name="Rab19"
                     /note="Rab GTPase family 19 (Rab19); cd01864"
                     /db_xref="CDD:133267"
     Site            16..17
                     /site_type="other"
                     /note="Rab subfamily motif 1 (RabSF1)"
                     /db_xref="CDD:133267"
     Site            22..29
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:133267"
     Site            order(24..30,40..41,46..47,73,128..129,131,159..161)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:133267"
     Site            order(30..41,45..46)
                     /site_type="other"
                     /note="Rab subfamily motif 2 (RabSF2)"
                     /db_xref="CDD:133267"
     Site            order(40,45..53)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:133267"
     Site            order(45,49..56,63,65)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133267"
     Site            47
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:133267"
     Site            order(48,50..52,67,69,76..77,80,84,86..89,177)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:133267"
     Site            order(48..49,51,69..70,77,79,81..83)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133267"
     Site            48..52
                     /site_type="other"
                     /note="Rab family motif 1 (RabF1)"
                     /db_xref="CDD:133267"
     Site            65..69
                     /site_type="other"
                     /note="Rab family motif 2 (RabF2)"
                     /db_xref="CDD:133267"
     Site            70..73
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:133267"
     Site            order(73,75..85)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:133267"
     Site            76..81
                     /site_type="other"
                     /note="Rab family motif 3 (RabF3)"
                     /db_xref="CDD:133267"
     Site            84..88
                     /site_type="other"
                     /note="Rab family motif 4 (RabF4)"
                     /db_xref="CDD:133267"
     Site            93..98
                     /site_type="other"
                     /note="Rab family motif 5 (RabF5)"
                     /db_xref="CDD:133267"
     Site            120..125
                     /site_type="other"
                     /note="Rab subfamily motif 3 (RabSF3)"
                     /db_xref="CDD:133267"
     Site            128..131
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:133267"
     Site            159..161
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:133267"
     Site            175..177
                     /site_type="other"
                     /note="Rab subfamily motif 4 (RabSF4)"
                     /db_xref="CDD:133267"
     CDS             1..214
                     /gene="RAB19"
                     /coded_by="XM_054052552.1:161..805"
                     /db_xref="GeneID:104058941"
ORIGIN      
        1 mpfpssstdd afdylfkiil igdsnvgktc vvhrfktgqy nekqqntigv dftvrsmdid
       61 gkkvkiqvwd tagqerfrti tqsyyrsahg ailaydltrr stfesiphwi heiekygaan
      121 lvmmlignks dsldkrqvlf edactlaekh gllavletsa keaqnieevf tlmakeliar
      181 ntlqlhgenp pnsiyldsrp viaspsvekt qclc
//
LOCUS       XP_053908540             214 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related protein Rab-19 [Cuculus canorus].
ACCESSION   XP_053908540
VERSION     XP_053908540.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052565.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..214
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..214
                     /product="ras-related protein Rab-19"
                     /calculated_mol_wt=24005
     Region          13..177
                     /region_name="Rab19"
                     /note="Rab GTPase family 19 (Rab19); cd01864"
                     /db_xref="CDD:133267"
     Site            16..17
                     /site_type="other"
                     /note="Rab subfamily motif 1 (RabSF1)"
                     /db_xref="CDD:133267"
     Site            22..29
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:133267"
     Site            order(24..30,40..41,46..47,73,128..129,131,159..161)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:133267"
     Site            order(30..41,45..46)
                     /site_type="other"
                     /note="Rab subfamily motif 2 (RabSF2)"
                     /db_xref="CDD:133267"
     Site            order(40,45..53)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:133267"
     Site            order(45,49..56,63,65)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133267"
     Site            47
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:133267"
     Site            order(48,50..52,67,69,76..77,80,84,86..89,177)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:133267"
     Site            order(48..49,51,69..70,77,79,81..83)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133267"
     Site            48..52
                     /site_type="other"
                     /note="Rab family motif 1 (RabF1)"
                     /db_xref="CDD:133267"
     Site            65..69
                     /site_type="other"
                     /note="Rab family motif 2 (RabF2)"
                     /db_xref="CDD:133267"
     Site            70..73
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:133267"
     Site            order(73,75..85)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:133267"
     Site            76..81
                     /site_type="other"
                     /note="Rab family motif 3 (RabF3)"
                     /db_xref="CDD:133267"
     Site            84..88
                     /site_type="other"
                     /note="Rab family motif 4 (RabF4)"
                     /db_xref="CDD:133267"
     Site            93..98
                     /site_type="other"
                     /note="Rab family motif 5 (RabF5)"
                     /db_xref="CDD:133267"
     Site            120..125
                     /site_type="other"
                     /note="Rab subfamily motif 3 (RabSF3)"
                     /db_xref="CDD:133267"
     Site            128..131
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:133267"
     Site            159..161
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:133267"
     Site            175..177
                     /site_type="other"
                     /note="Rab subfamily motif 4 (RabSF4)"
                     /db_xref="CDD:133267"
     CDS             1..214
                     /gene="RAB19"
                     /coded_by="XM_054052565.1:152..796"
                     /db_xref="GeneID:104058941"
ORIGIN      
        1 mpfpssstdd afdylfkiil igdsnvgktc vvhrfktgqy nekqqntigv dftvrsmdid
       61 gkkvkiqvwd tagqerfrti tqsyyrsahg ailaydltrr stfesiphwi heiekygaan
      121 lvmmlignks dsldkrqvlf edactlaekh gllavletsa keaqnieevf tlmakeliar
      181 ntlqlhgenp pnsiyldsrp viaspsvekt qclc
//
LOCUS       XP_009558822             326 aa            linear   VRT 09-MAR-2023
DEFINITION  aldo-keto reductase family 1 member D1 [Cuculus canorus].
ACCESSION   XP_009558822
VERSION     XP_009558822.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560527.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009558822.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..326
                     /product="aldo-keto reductase family 1 member D1"
                     /calculated_mol_wt=37356
     Region          15..322
                     /region_name="AKR_AKR1D1-3"
                     /note="AKR1D family of aldo-keto reductase (AKR); cd19109"
                     /db_xref="CDD:381335"
     Site            order(24..26,53,58,87,89,120,132,169..170,193,219..225,
                     230,239,256,271..276,279,282..283,314)
                     /site_type="active"
                     /db_xref="CDD:381335"
     Site            order(24..26,53,58)
                     /site_type="active"
                     /note="catalytic tetrad [active]"
                     /db_xref="CDD:381335"
     CDS             1..326
                     /gene="AKR1D1"
                     /coded_by="XM_009560527.2:173..1153"
                     /db_xref="GeneID:104058937"
ORIGIN      
        1 mnltaeshri plsdgnsipl lglgtyadpk ktpkgscles vkiaidtgyr hidgafvyyn
       61 ehevgqaire kiaegrikre difycgklwn tchppelvrp tlektlkilq ldyvdlyiie
      121 lpmafkpgda iypkdengkf iyhetdlcat weameackda glvksigvsn fnrrqlemil
      181 nkpglkykpv snqvechpyf tqpkllefcr qndivivgys plgtsrdetw vnvssppllk
      241 dpvlnaigkk ynktaaqial rfniqrgvvv ipksfhpqri renfqifdfs ltekemkeie
      301 alnknvryve llmwrdhpey pfndey
//
LOCUS       XP_053908580             302 aa            linear   VRT 09-MAR-2023
DEFINITION  PRKC apoptosis WT1 regulator protein [Cuculus canorus].
ACCESSION   XP_053908580
VERSION     XP_053908580.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052605.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..302
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..302
                     /product="PRKC apoptosis WT1 regulator protein"
                     /calculated_mol_wt=32709
     Region          <230..302
                     /region_name="COG2433"
                     /note="Possible nuclease of RNase H fold, RuvC/YqgF family
                     [General function prediction only]"
                     /db_xref="CDD:441980"
     CDS             1..302
                     /gene="PAWR"
                     /coded_by="XM_054052605.1:230..1138"
                     /db_xref="GeneID:104061162"
ORIGIN      
        1 matggyrggs sttdfleewk akrekmrakq apsapgaaep kpvgaappae lnnnnnnnpp
       61 saappdraap pgggagncsa agraaepgsp gaeekppakg kssgpsarkg kgqiekrklr
      121 ekrrstgvvn ipaaesldey eddeagqker kkedaitqqn tlqnesssad tpgsyllqds
      181 srmvssryks tanapeddap nrysrtdrtt ysrysrdans sgssvpsnal ekrieelere
      241 lakerqenar lmkmtqdkee ligklkeeid llnrdlddie deneqlkqen ktllkvvgql
      301 tr
//
LOCUS       XP_053908594            2901 aa            linear   VRT 09-MAR-2023
DEFINITION  matrix-remodeling-associated protein 5 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053908594
VERSION     XP_053908594.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052619.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2901
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2901
                     /product="matrix-remodeling-associated protein 5 isoform
                     X1"
                     /calculated_mol_wt=322163
     Region          93..111
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <98..147
                     /region_name="LRR_8"
                     /note="Leucine rich repeat; pfam13855"
                     /db_xref="CDD:404697"
     Region          113..136
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <127..>292
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          137..160
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          161..184
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          185..208
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          209..228
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          242..264
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          273..>319
                     /region_name="LRRCT"
                     /note="Leucine rich repeat C-terminal domain; smart00082"
                     /db_xref="CDD:214507"
     Region          538..621
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          547..550
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          559..563
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          587..591
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          601..606
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          623..704
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     Region          1927..2017
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          1943..1947
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          1956..1960
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          1983..1987
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          1997..2002
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          2010..2013
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          2030..2114
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          2040..2044
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409421"
     Region          2053..2057
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409421"
     Region          2080..2084
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409421"
     Region          2094..2099
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409421"
     Region          2107..2110
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409421"
     Region          2118..2198
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     Region          2219..2298
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     Region          2327..2414
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          2334..2338
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409460"
     Region          2347..2351
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409460"
     Region          2380..2384
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409460"
     Region          2394..2399
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409460"
     Region          2429..2500
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          2437..2441
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409561"
     Region          2450..2454
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409561"
     Region          2474..2478
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409561"
     Region          2488..2493
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409561"
     Region          2501..2504
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409561"
     Region          <2539..2608
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          2548..2552
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409421"
     Region          2574..2578
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409421"
     Region          2588..2593
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409421"
     Region          2601..2604
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409421"
     Region          2622..2706
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          2633..2637
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          2646..2650
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          2672..2676
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          2686..2691
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          2700..2703
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          2725..2801
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          2728..2732
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          2741..2745
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          2767..2771
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          2781..2786
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          2805..2887
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     CDS             1..2901
                     /gene="MXRA5"
                     /coded_by="XM_054052619.1:349..9054"
                     /db_xref="GeneID:104063730"
ORIGIN      
        1 mgspraaprr aaagcdeprg agaelcsrvt aariparaap aqtpaparrr sqaregkkmg
       61 ervgalsvvl ilglglprga lacphpcacy lptevhctfr slaavparip khverinfgf
      121 nsiqsiygns fagltklell mihgndiqni pngalkdlvs lqvfkisynk lkvitgqtlq
      181 glsslmrlhm dhnriefihp nafngltslr lvhlegnllq qlhpntfstf mvldyfklst
      241 vrhlylsena lrtlpaelfk gmpllenlyl hgnpwacdcn lkwllewnel sggvlkckkd
      301 kayeggqlcp kcsspkqlqk ediqnlkdis crkpviqssl rqnstiqded dddsyetple
      361 alqsspwnvt lnmtdehgnv vhlnceikkp tgsskiqwnq iqtqeidina tisldfecpm
      421 nrenyeklwk liayysevpv klerelmvsk epkisyryrq gsdydalyyt gvkaqimaep
      481 swvmqplvni qlnrhrstgk kvvlsfftvf cqtistkdtr hqrnwvmieq nqstrtaqsv
      541 legsecqlrc dvkasespsv qwhfpdgtkl qapfnqkdgr fsilssgqlm ikavnytdsg
      601 lyhcvaqvrg dvdimayrll vqppafqvad sdvarveknv gdpivlpcna vaipepqvsw
      661 ilpnsqvlnd lsnsskgyml dngtllipks hvsdsgyyrc vavnqqgsdq fvvrvtvnkm
      721 vsdrsfkrlk lkkhprskss sktrgrvidd gegsgaegvd efprrknhlk dreisfkqks
      781 dqvleaqikk rkkgrkkmki wkttdrtqdg nvaegrrvfe srrrinmask qinpehwadi
      841 lakvrgknip rtttdmaisl ttaqpsvmhk ttpvphpvas plpsdtaadg vdssadaspv
      901 geeepfsvtv fhnteafsaq smltrteiep ftdhkaletl tsvypaeipv sgpyltpvsa
      961 tmqpqdqqhl dvridddsvv vkgnihalte eplnrqivtn fpdtqsssft venadrtkas
     1021 tseetsafae lpldatvlae sqsvdlhnil ettmklnevd lmnvdttglt ppqldeiipt
     1081 dsvgtttiss svspfvteks sdlihqhkel ptgrtkmadl stnfpsvtli svqskeepkt
     1141 hrntvaqesi sssyaesfqg gehrnlatqk tglsftlpst nalhktaggi kpassisrlt
     1201 tvattttpyr ktvpslvtqr vrkrpygrrr lrpnrmrqrp kpfprvvltt evmpvvprtp
     1261 evvavtktat lespglknnf kiqakeekhm eytplvtdpv tsekvtkike vvttsffrpt
     1321 aspseakhvt hsstpktlvq pvtapitils syvvhdavpt iessvslepe qsrvptynsl
     1381 dniseeegsk adsqtmdskt eqssttaspe hmnslilstk pefqeqpilf dsevvvnett
     1441 tgpfqllypt mtdlnipvgt vevfkdlsvs keqwkptvsl etsviteppq kyemitlsps
     1501 ssmteaqtfp lretkksvts qsetkpsyld kkeaishvlh hdptlhttek pqttsstfip
     1561 liklvtlpps isrtshpslh ytteesnasn qegfaeakqv eedgdkmlvs srqnvhptps
     1621 fsrnrisiql keeqfeemys sksnnsllln pnlpdppagm ipslnqrlpv vppkhvpvrg
     1681 tvkppyivtq gsfhyfithr plhytnkpei tayaahtiqd kksfvsqrei taptqaspfh
     1741 ktnpftaskf gnqsqnrynv nsrlwgnnyv pdnrgtagrl pnqgipypss rmpflfnrtr
     1801 ifphlsmhpk pvvpsqlvpk dtkekkiaqv sptritvqka taipmppvph tttttspppt
     1861 ilkitppafl sqhtkpqist tvqpfknvhh hhqkvpsvpy vegimphnlt viqsstnfri
     1921 hgeipkiitk gsqsmsvlae tdafipceat gepkpfitwt kistgalmta ntrlqrfevw
     1981 kngtllirnv qlqdhgqylc taqnlhgidk mivvltvvah qpkmllshyr dvtvyfgdsi
     2041 amecqasgtp rphiswifpd rkilqtvttt esrimlhenr tlsikqatfs drgvykcvas
     2101 naagadsiav rlhiaalppi iqqdkqenis lplgssinih ctakaapsps irwvvfdgtq
     2161 irpsqfingn lfvfpngtly irnvspkdsg tyeciaaniv gaarrtvqlh vkkhasnaki
     2221 tgsspqrtdv tygsilhldc sasgdpwpri lwrlpskrmi dslhsslekr ikvfsngtlv
     2281 vysvtdkdag dylcvarnki gddyvvlkvn vmmkpakieh knknnhkvky ggdlkvdcva
     2341 tglpnpeisw glpdgsmint fmqsddsgsr tkryvvfnng tlyfndvglr eegdytcyae
     2401 nqigkdemkv rvkvvaepat irnktytiin vpygdvvtva ceakgeptpk vtwlsptnrp
     2461 ipalsdkyqv yrdgtlliqk aqrsdsgnyt cvvrnsaged rkivwihvnv qppringhls
     2521 aitsvretai rdsrklidck aegipaprvl wafpegvilp apyygnritv hrngtldire
     2581 vrqtdavqli cigrneggea rlivqllitd hlekpsfrdp vseritaiag hsinlncsvq
     2641 gnpkpstswi lpngtevlsg srlhrfyhkr dgilhissls agdagtyrct arnpggyver
     2701 vvflkvglrp eisnhynnlv siingetlql hcitqvnqqt qiswtlpngm vldapqavgr
     2761 fsllengslt vreasvfdrg tylckvstey gtsvmnvpvi viaypprits epapviyarp
     2821 gnsvklncma igipkaeitw elpdkshltt gaqsrlygnk flhpqgslvi qpstqrdagf
     2881 ykctaknilg sdskttyihi f
//
LOCUS       XP_053908606            2900 aa            linear   VRT 09-MAR-2023
DEFINITION  matrix-remodeling-associated protein 5 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053908606
VERSION     XP_053908606.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052631.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2900
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2900
                     /product="matrix-remodeling-associated protein 5 isoform
                     X2"
                     /calculated_mol_wt=322076
     Region          93..111
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <98..147
                     /region_name="LRR_8"
                     /note="Leucine rich repeat; pfam13855"
                     /db_xref="CDD:404697"
     Region          113..136
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <127..>292
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          137..160
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          161..184
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          185..208
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          209..228
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          242..264
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          273..>319
                     /region_name="LRRCT"
                     /note="Leucine rich repeat C-terminal domain; smart00082"
                     /db_xref="CDD:214507"
     Region          538..621
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          547..550
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          559..563
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          587..591
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          601..606
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          623..704
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     Region          1927..2017
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          1943..1947
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409544"
     Region          1956..1960
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409544"
     Region          1983..1987
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409544"
     Region          1997..2002
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409544"
     Region          2010..2013
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409544"
     Region          2030..2114
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          2040..2044
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409421"
     Region          2053..2057
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409421"
     Region          2080..2084
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409421"
     Region          2094..2099
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409421"
     Region          2107..2110
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409421"
     Region          2118..2198
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     Region          2219..2297
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     Region          2326..2413
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          2333..2337
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409460"
     Region          2346..2350
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409460"
     Region          2379..2383
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409460"
     Region          2393..2398
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409460"
     Region          2428..2499
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          2436..2440
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409561"
     Region          2449..2453
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409561"
     Region          2473..2477
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409561"
     Region          2487..2492
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409561"
     Region          2500..2503
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409561"
     Region          <2538..2607
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          2547..2551
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409421"
     Region          2573..2577
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409421"
     Region          2587..2592
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409421"
     Region          2600..2603
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409421"
     Region          2621..2705
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          2632..2636
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          2645..2649
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          2671..2675
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          2685..2690
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          2699..2702
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          2724..2800
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          2727..2731
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          2740..2744
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          2766..2770
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          2780..2785
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          2804..2886
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     CDS             1..2900
                     /gene="MXRA5"
                     /coded_by="XM_054052631.1:350..9052"
                     /db_xref="GeneID:104063730"
ORIGIN      
        1 mgspraaprr aaagcdeprg agaelcsrvt aariparaap aqtpaparrr sqaregkkmg
       61 ervgalsvvl ilglglprga lacphpcacy lptevhctfr slaavparip khverinfgf
      121 nsiqsiygns fagltklell mihgndiqni pngalkdlvs lqvfkisynk lkvitgqtlq
      181 glsslmrlhm dhnriefihp nafngltslr lvhlegnllq qlhpntfstf mvldyfklst
      241 vrhlylsena lrtlpaelfk gmpllenlyl hgnpwacdcn lkwllewnel sggvlkckkd
      301 kayeggqlcp kcsspkqlqk ediqnlkdis crkpviqssl rqnstiqded dddsyetple
      361 alqsspwnvt lnmtdehgnv vhlnceikkp tgsskiqwnq iqtqeidina tisldfecpm
      421 nrenyeklwk liayysevpv klerelmvsk epkisyryrq gsdydalyyt gvkaqimaep
      481 swvmqplvni qlnrhrstgk kvvlsfftvf cqtistkdtr hqrnwvmieq nqstrtaqsv
      541 legsecqlrc dvkasespsv qwhfpdgtkl qapfnqkdgr fsilssgqlm ikavnytdsg
      601 lyhcvaqvrg dvdimayrll vqppafqvad sdvarveknv gdpivlpcna vaipepqvsw
      661 ilpnsqvlnd lsnsskgyml dngtllipks hvsdsgyyrc vavnqqgsdq fvvrvtvnkm
      721 vsdrsfkrlk lkkhprskss sktrgrvidd gegsgaegvd efprrknhlk dreisfkqks
      781 dqvleaqikk rkkgrkkmki wkttdrtqdg nvaegrrvfe srrrinmask qinpehwadi
      841 lakvrgknip rtttdmaisl ttaqpsvmhk ttpvphpvas plpsdtaadg vdssadaspv
      901 geeepfsvtv fhnteafsaq smltrteiep ftdhkaletl tsvypaeipv sgpyltpvsa
      961 tmqpqdqqhl dvridddsvv vkgnihalte eplnrqivtn fpdtqsssft venadrtkas
     1021 tseetsafae lpldatvlae sqsvdlhnil ettmklnevd lmnvdttglt ppqldeiipt
     1081 dsvgtttiss svspfvteks sdlihqhkel ptgrtkmadl stnfpsvtli svqskeepkt
     1141 hrntvaqesi sssyaesfqg gehrnlatqk tglsftlpst nalhktaggi kpassisrlt
     1201 tvattttpyr ktvpslvtqr vrkrpygrrr lrpnrmrqrp kpfprvvltt evmpvvprtp
     1261 evvavtktat lespglknnf kiqakeekhm eytplvtdpv tsekvtkike vvttsffrpt
     1321 aspseakhvt hsstpktlvq pvtapitils syvvhdavpt iessvslepe qsrvptynsl
     1381 dniseeegsk adsqtmdskt eqssttaspe hmnslilstk pefqeqpilf dsevvvnett
     1441 tgpfqllypt mtdlnipvgt vevfkdlsvs keqwkptvsl etsviteppq kyemitlsps
     1501 ssmteaqtfp lretkksvts qsetkpsyld kkeaishvlh hdptlhttek pqttsstfip
     1561 liklvtlpps isrtshpslh ytteesnasn qegfaeakqv eedgdkmlvs srqnvhptps
     1621 fsrnrisiql keeqfeemys sksnnsllln pnlpdppagm ipslnqrlpv vppkhvpvrg
     1681 tvkppyivtq gsfhyfithr plhytnkpei tayaahtiqd kksfvsqrei taptqaspfh
     1741 ktnpftaskf gnqsqnrynv nsrlwgnnyv pdnrgtagrl pnqgipypss rmpflfnrtr
     1801 ifphlsmhpk pvvpsqlvpk dtkekkiaqv sptritvqka taipmppvph tttttspppt
     1861 ilkitppafl sqhtkpqist tvqpfknvhh hhqkvpsvpy vegimphnlt viqsstnfri
     1921 hgeipkiitk gsqsmsvlae tdafipceat gepkpfitwt kistgalmta ntrlqrfevw
     1981 kngtllirnv qlqdhgqylc taqnlhgidk mivvltvvah qpkmllshyr dvtvyfgdsi
     2041 amecqasgtp rphiswifpd rkilqtvttt esrimlhenr tlsikqatfs drgvykcvas
     2101 naagadsiav rlhiaalppi iqqdkqenis lplgssinih ctakaapsps irwvvfdgtq
     2161 irpsqfingn lfvfpngtly irnvspkdsg tyeciaaniv gaarrtvqlh vkkhasnaki
     2221 tgsspqrtdv tygsilhldc sasgdpwpri lwrlpskrmi dslhslekri kvfsngtlvv
     2281 ysvtdkdagd ylcvarnkig ddyvvlkvnv mmkpakiehk nknnhkvkyg gdlkvdcvat
     2341 glpnpeiswg lpdgsmintf mqsddsgsrt kryvvfnngt lyfndvglre egdytcyaen
     2401 qigkdemkvr vkvvaepati rnktytiinv pygdvvtvac eakgeptpkv twlsptnrpi
     2461 palsdkyqvy rdgtlliqka qrsdsgnytc vvrnsagedr kivwihvnvq ppringhlsa
     2521 itsvretair dsrklidcka egipaprvlw afpegvilpa pyygnritvh rngtldirev
     2581 rqtdavqlic igrneggear livqllitdh lekpsfrdpv seritaiagh sinlncsvqg
     2641 npkpstswil pngtevlsgs rlhrfyhkrd gilhisslsa gdagtyrcta rnpggyverv
     2701 vflkvglrpe isnhynnlvs iingetlqlh citqvnqqtq iswtlpngmv ldapqavgrf
     2761 sllengsltv reasvfdrgt ylckvsteyg tsvmnvpviv iayppritse papviyarpg
     2821 nsvklncmai gipkaeitwe lpdkshlttg aqsrlygnkf lhpqgslviq pstqrdagfy
     2881 kctaknilgs dskttyihif
//
LOCUS       XP_053908619             324 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 52B2 [Cuculus canorus].
ACCESSION   XP_053908619
VERSION     XP_053908619.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052644.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..324
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..324
                     /product="olfactory receptor 52B2"
                     /calculated_mol_wt=36365
     Region          27..301
                     /region_name="7tmA_OR52B-like"
                     /note="olfactory receptor subfamily 52B and related
                     proteins, member of the class A family of
                     seven-transmembrane G protein-coupled receptors; cd15221"
                     /db_xref="CDD:320349"
     Region          28..54
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320349"
     Region          61..88
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320349"
     Site            order(83,86..87,99..104,106..107,110,155,157..161,197,
                     200..202,204..206,208..209,254,257..258,260..261,264,
                     272..273,275..277,280,283..284)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320349"
     Region          99..129
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320349"
     Region          142..163
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320349"
     Region          197..227
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320349"
     Region          234..264
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320349"
     Region          273..298
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320349"
     CDS             1..324
                     /gene="LOC104056124"
                     /coded_by="XM_054052644.1:619..1593"
                     /db_xref="GeneID:104056124"
ORIGIN      
        1 myelnessfd pitfvltgip gmeeshiwis vpfclmyita vfsnsivlfv iiterslhep
       61 mylflamlav sdlmlstttv pkmlaifwfs areisfdaci tqmffthftf ivessvllam
      121 afdryvavcd plrysstltp svigkiamaa virgfcimfp pifllkrlpy cghnvmphty
      181 cehmgiarla cadikanvwy glttsllssg ldvvlialsy alilrvvfrl pstearlktl
      241 stcgshlcvi lmfyvpaffs flthrfgrhi pshvhillan lyvvvppmln pivygvrtrq
      301 irervvrlfc savecpcscw gsgc
//
LOCUS       XP_053908628             321 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 52E4 [Cuculus canorus].
ACCESSION   XP_053908628
VERSION     XP_053908628.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052653.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..321
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..321
                     /product="olfactory receptor 52E4"
                     /calculated_mol_wt=35827
     Region          27..301
                     /region_name="7tmA_OR52B-like"
                     /note="olfactory receptor subfamily 52B and related
                     proteins, member of the class A family of
                     seven-transmembrane G protein-coupled receptors; cd15221"
                     /db_xref="CDD:320349"
     Region          28..54
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320349"
     Region          61..88
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320349"
     Site            order(83,86..87,99..104,106..107,110,155,157..161,197,
                     200..202,204..206,208..209,254,257..258,260..261,264,
                     272..273,275..277,280,283..284)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320349"
     Region          99..129
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320349"
     Region          142..163
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320349"
     Region          197..227
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320349"
     Region          234..264
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320349"
     Region          273..298
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320349"
     CDS             1..321
                     /gene="LOC104056115"
                     /coded_by="XM_054052653.1:34..999"
                     /db_xref="GeneID:104056115"
ORIGIN      
        1 mtlfnltslt pamfilagip gmeklhiwis ipfcsmylas llgngiilfv irtehslhqp
       61 mylflsmlai advvlstttv pkmlalfwfs ageisfgacl tqmfflhftf saesvlllam
      121 afdrfvaicn plryaavltp savvktglva llrsfciifp cvfllkrlpf cghnviphty
      181 cehmgiarla cadisinvly glivpfaaiv vdvvliavsy ililpvlvrl psktarhkaf
      241 ntcgshlcvi llfyipafft vlthrfgqei phhihillan lyvlfpplln pvvygvrtqq
      301 iktkvvkifv cpkrcwlreq e
//
LOCUS       XP_053908637             321 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 52E4 [Cuculus canorus].
ACCESSION   XP_053908637
VERSION     XP_053908637.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052662.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..321
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..321
                     /product="olfactory receptor 52E4"
                     /calculated_mol_wt=35827
     Region          27..301
                     /region_name="7tmA_OR52B-like"
                     /note="olfactory receptor subfamily 52B and related
                     proteins, member of the class A family of
                     seven-transmembrane G protein-coupled receptors; cd15221"
                     /db_xref="CDD:320349"
     Region          28..54
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320349"
     Region          61..88
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320349"
     Site            order(83,86..87,99..104,106..107,110,155,157..161,197,
                     200..202,204..206,208..209,254,257..258,260..261,264,
                     272..273,275..277,280,283..284)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320349"
     Region          99..129
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320349"
     Region          142..163
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320349"
     Region          197..227
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320349"
     Region          234..264
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320349"
     Region          273..298
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320349"
     CDS             1..321
                     /gene="LOC104056115"
                     /coded_by="XM_054052662.1:782..1747"
                     /db_xref="GeneID:104056115"
ORIGIN      
        1 mtlfnltslt pamfilagip gmeklhiwis ipfcsmylas llgngiilfv irtehslhqp
       61 mylflsmlai advvlstttv pkmlalfwfs ageisfgacl tqmfflhftf saesvlllam
      121 afdrfvaicn plryaavltp savvktglva llrsfciifp cvfllkrlpf cghnviphty
      181 cehmgiarla cadisinvly glivpfaaiv vdvvliavsy ililpvlvrl psktarhkaf
      241 ntcgshlcvi llfyipafft vlthrfgqei phhihillan lyvlfpplln pvvygvrtqq
      301 iktkvvkifv cpkrcwlreq e
//
LOCUS       XP_053908648             919 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear pore complex protein Nup107 [Cuculus canorus].
ACCESSION   XP_053908648
VERSION     XP_053908648.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052673.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..919
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..919
                     /product="nuclear pore complex protein Nup107"
                     /calculated_mol_wt=105508
     Region          205..902
                     /region_name="Nup84_Nup100"
                     /note="Nuclear pore protein 84 / 107; pfam04121"
                     /db_xref="CDD:461184"
     CDS             1..919
                     /gene="NUP107"
                     /coded_by="XM_054052673.1:52..2811"
                     /db_xref="GeneID:104061338"
ORIGIN      
        1 mersvfedms sprdaevakl gwkqnakkrv svltslddti gsmtprgqli sqtpssflrq
       61 pvtaltrssm kpldmsailg pggksplilp npglfnnlsm ldesnwtmai sphqtgmfan
      121 idmsnmtedv tmsavllsed dpgeaatmsm yedflhsflk htsttifdlv deyesicnaq
      181 vnilgkivyr atpgqqkfsk tasvlwllkq emvtwrllss lyrdriqsal edetaldttv
      241 lntsektnid nffqkdslvr qsqlvvdwle siakddigdf sdniefyaks vywentlhil
      301 kqqqlstyig ssralvteld pdapirqklp lddldredda rllkylftli ragmtdeaqr
      361 lckrcgqawr aatlegwkly hdpninggke lepvqgnpyr ciwkiscwrm aeeeqfnrye
      421 raiyaalsgn lkqllpvcdt wedtvwayfr vmvdtlveqe irtslitaee veelpreyle
      481 tswtsekvfe elqatdkkrv ieenqehyhv iqkfiilgdv dglmeefsrw lskdrsvlpg
      541 hllrfmthli lffrtlglqt kgevsvevlk tyiqrivaek htdliayyvs hlppelavaq
      601 yalfledvte sdqrhhclql akdagldvat itktvvenir kkdasefshh dqmldtgtte
      661 adrlkidvid wlvfdpaqra ealkqsnaim rkflaskkhe aakdvfvkip qdsiaeiynq
      721 weeqgmdapl paeddnaire nlciraylea hdtfnewfkh mnttpqkpsl lphasftekv
      781 ahehkekkye mdysiwkgll daltadvkek iynvllfvdg gwmvdvreda nndperthqm
      841 illrklclpm mcfllhtvlh stgqyqeclr ladmvaserh klytvfskee lqkllqklre
      901 sslmlldqdl dplgyeiqs
//
LOCUS       XP_053908658            1069 aa            linear   VRT 09-MAR-2023
DEFINITION  guanylyl cyclase C isoform X1 [Cuculus canorus].
ACCESSION   XP_053908658
VERSION     XP_053908658.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052683.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1069
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1069
                     /product="guanylyl cyclase C isoform X1"
                     /calculated_mol_wt=122574
     Region          31..411
                     /region_name="Periplasmic_Binding_Protein_type1"
                     /note="Type 1 periplasmic binding fold superfamily;
                     cl10011"
                     /db_xref="CDD:471960"
     Region          476..746
                     /region_name="PK_GC-C"
                     /note="Pseudokinase domain of the membrane Guanylate
                     Cyclase receptor, GC-C; cd14044"
                     /db_xref="CDD:270946"
     Region          784..976
                     /region_name="CYCc"
                     /note="Adenylyl- / guanylyl cyclase, catalytic domain;
                     smart00044"
                     /db_xref="CDD:214485"
     Site            order(823,825..830,865,867..869,872,937..939,943..944,
                     947..948,986)
                     /site_type="active"
                     /note="nucleotidyl binding site [active]"
                     /db_xref="CDD:143636"
     Site            order(825,869)
                     /site_type="metal-binding"
                     /note="metal binding site [ion binding]"
                     /db_xref="CDD:143636"
     Site            order(830,842,845..846,849,853,865..866,925,928,938..941,
                     944,986)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:143636"
     CDS             1..1069
                     /gene="GUCY2C"
                     /coded_by="XM_054052683.1:253..3462"
                     /db_xref="GeneID:104055472"
ORIGIN      
        1 mkqlllglai wpvffslqqq vnphecssnn yvinvmlmny sdlpsstdnl elavkhalkr
       61 vqnefqetga nvtvsatfhs ytssfyvsqg crtstcegve likdiynkgt lgcvvigpac
      121 tyatyqmvsa dtilsmplis vgsfglscdy kvnlirlltp arkvndffyy fwkdsqlpfk
      181 tttwestyiy krnnsseacl wymnaldagi tqfseklnfk eilrtpeqlq ntvkdpnrrs
      241 nviimcgspd dvssdlgtge vdkdiviili dlfnntyfrn nnsahymqnv lvltllpddy
      301 svniakteda tlmeddfvvg yfnavllfgh ilkkfvssqr pvsplsfine frnttfegvl
      361 gpvsldefgd idtnltllyt pltanhfral lyfntqknet hkettspdfv wknhklpsdi
      421 pgtgphilti avftltgivi lvliisllil rkyrrdnerr wkkwshippe eilpletset
      481 shvslkided krrdttqrlr qgkydkkvvi lkdlknsdgn fsekqkieln kllqidyynl
      541 tkfygtvkid tmifgvieyc ergslrdvln dkisypdgtf mdwefkisvm ydiakgmsyl
      601 hssktevhgr lkstncvvdn rmvvkitdfg cnsilpprkd lwtapehlrh advsqkgdvy
      661 sygiiaqeii lrretfytrq cwdnkeklyr vksgrgakpf rpdlsletvg eremevytlv
      721 kscweedpek rpdfkkiest lakifsnyhg qgnesymdtl irrlqlysrn lehlveerte
      781 lykaerdrad rlnfmllprp vvkslketgl vepelfeevt iyfsdivgft tlckystpme
      841 vvdmlndiyk nfdhildhhd vykvetigda ymvvsglpnr ngnrhavdis mmaldilsfm
      901 gsfelrhlpg lpvwirigih sgpcaagvvg ikmpryclfg dtvntasrme stglplrihv
      961 sgstinilkr tdcqfqyevr getylkgrgt eitywltgtk dkkynlptpp svenlqrlqd
     1021 dlaemitnil qkrenegfkt reltrvasyr sgtleylqla steksvtyl
//
LOCUS       XP_053908665             935 aa            linear   VRT 09-MAR-2023
DEFINITION  guanylyl cyclase C isoform X2 [Cuculus canorus].
ACCESSION   XP_053908665
VERSION     XP_053908665.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052690.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..935
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..935
                     /product="guanylyl cyclase C isoform X2"
                     /calculated_mol_wt=107993
     Region          <9..277
                     /region_name="Periplasmic_Binding_Protein_type1"
                     /note="Type 1 periplasmic binding fold superfamily;
                     cl10011"
                     /db_xref="CDD:471960"
     Region          342..612
                     /region_name="PK_GC-C"
                     /note="Pseudokinase domain of the membrane Guanylate
                     Cyclase receptor, GC-C; cd14044"
                     /db_xref="CDD:270946"
     Region          650..842
                     /region_name="CYCc"
                     /note="Adenylyl- / guanylyl cyclase, catalytic domain;
                     smart00044"
                     /db_xref="CDD:214485"
     Site            order(689,691..696,731,733..735,738,803..805,809..810,
                     813..814,852)
                     /site_type="active"
                     /note="nucleotidyl binding site [active]"
                     /db_xref="CDD:143636"
     Site            order(691,735)
                     /site_type="metal-binding"
                     /note="metal binding site [ion binding]"
                     /db_xref="CDD:143636"
     Site            order(696,708,711..712,715,719,731..732,791,794,804..807,
                     810,852)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:143636"
     CDS             1..935
                     /gene="GUCY2C"
                     /coded_by="XM_054052690.1:160..2967"
                     /db_xref="GeneID:104055472"
ORIGIN      
        1 mlptkwsrsf glscdykvnl irlltparkv ndffyyfwkd sqlpfktttw estyiykrnn
       61 sseaclwymn aldagitqfs eklnfkeilr tpeqlqntvk dpnrrsnvii mcgspddvss
      121 dlgtgevdkd iviilidlfn ntyfrnnnsa hymqnvlvlt llpddysvni aktedatlme
      181 ddfvvgyfna vllfghilkk fvssqrpvsp lsfinefrnt tfegvlgpvs ldefgdidtn
      241 ltllytplta nhfrallyfn tqknethket tspdfvwknh klpsdipgtg philtiavft
      301 ltgivilvli isllilrkyr rdnerrwkkw shippeeilp letsetshvs lkidedkrrd
      361 ttqrlrqgky dkkvvilkdl knsdgnfsek qkielnkllq idyynltkfy gtvkidtmif
      421 gvieycergs lrdvlndkis ypdgtfmdwe fkisvmydia kgmsylhssk tevhgrlkst
      481 ncvvdnrmvv kitdfgcnsi lpprkdlwta pehlrhadvs qkgdvysygi iaqeiilrre
      541 tfytrqcwdn keklyrvksg rgakpfrpdl sletvgerem evytlvkscw eedpekrpdf
      601 kkiestlaki fsnyhgqgne symdtlirrl qlysrnlehl veertelyka erdradrlnf
      661 mllprpvvks lketglvepe lfeevtiyfs divgfttlck ystpmevvdm lndiyknfdh
      721 ildhhdvykv etigdaymvv sglpnrngnr havdismmal dilsfmgsfe lrhlpglpvw
      781 irigihsgpc aagvvgikmp ryclfgdtvn tasrmestgl plrihvsgst inilkrtdcq
      841 fqyevrgety lkgrgteity wltgtkdkky nlptppsven lqrlqddlae mitnilqkre
      901 negfktrelt rvasyrsgtl eylqlastek svtyl
//
LOCUS       XP_009564817             315 aa            linear   VRT 09-MAR-2023
DEFINITION  taste receptor type 2 member 40-like [Cuculus canorus].
ACCESSION   XP_009564817
VERSION     XP_009564817.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566522.2
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564817.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..315
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..315
                     /product="taste receptor type 2 member 40-like"
                     /calculated_mol_wt=35109
     Region          8..295
                     /region_name="7tm_TAS2R"
                     /note="mammalian taste receptors type 2, member of the
                     seven-transmembrane G protein-coupled receptor
                     superfamily; cd13950"
                     /db_xref="CDD:320088"
     Region          8..33
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320088"
     Region          45..66
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320088"
     Region          82..104
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320088"
     Region          131..147
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320088"
     Region          178..201
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320088"
     Region          226..251
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320088"
     Region          263..288
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320088"
     CDS             1..315
                     /gene="LOC104064220"
                     /coded_by="XM_009566522.2:1..948"
                     /db_xref="GeneID:104064220"
ORIGIN      
        1 mlppvliisi sivcievvvg vigngfitav iilkwikskk issvnlilif lstsrfilqm
       61 tilmyihsly fvdifklasm ykafgavwmf vnhaslwfst wlyvlycvki invtqrlllq
      121 iklriammvp clllgslvis svtsfpllwi tpsaylcsst gncrenstah ttdwnsshly
      181 llllyivgsf lplvlsvvts allitslckh tkrmqcyvdt frdplidvhi taiksiisfl
      241 ilylssfvaq illtlstsqs kdvvkvavsl vlagaypsih siilitvnsk lklafwvlcq
      301 hlkcpledls pclll
//
LOCUS       XP_053908687             264 aa            linear   VRT 09-MAR-2023
DEFINITION  uroplakin-3a [Cuculus canorus].
ACCESSION   XP_053908687
VERSION     XP_053908687.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052712.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..264
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..264
                     /product="uroplakin-3a"
                     /calculated_mol_wt=28498
     Region          21..215
                     /region_name="UP_III_II"
                     /note="Uroplakin IIIb, IIIa and II; cl06408"
                     /db_xref="CDD:471435"
     CDS             1..264
                     /gene="UPK3A"
                     /coded_by="XM_054052712.1:13..807"
                     /db_xref="GeneID:104062829"
ORIGIN      
        1 mcsrwvvlaf cclgqlcadq spkpqlaapq latnnptltt vslekpfcvf dsslrpnksy
       61 vvylyamkes asaisslvtd nsskpldstf qqtsggqmgp ykaalfnvpn casppnladv
      121 gdvnkvsdvl kqylfrvgdd gtclydpnfl dicnpplapd ttyrfkyvlv dstegitkgq
      181 slwsdpiktr kvklplkidt wpgrrsggmv vitsilsvlv flllvgllaa vssalmrsed
      241 ssaetrhvsq tgqqselkpq sssd
//
LOCUS       XP_009563233             679 aa            linear   VRT 09-MAR-2023
DEFINITION  fibulin-1 isoform X1 [Cuculus canorus].
ACCESSION   XP_009563233
VERSION     XP_009563233.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009564938.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009563233.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..679
                     /product="fibulin-1 isoform X1"
                     /calculated_mol_wt=74752
     Region          90..151
                     /region_name="ANATO"
                     /note="Anaphylatoxin homologous domain; C3a, C4a and C5a
                     anaphylatoxins are protein fragments generated
                     enzymatically in serum during activation of complement
                     molecules C3, C4, and C5. They induce smooth muscle
                     contraction. These fragments are homologous to...;
                     cd00017"
                     /db_xref="CDD:237984"
     Region          180..210
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          212..239
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF domain; pfam07645"
                     /db_xref="CDD:429571"
     Region          258..293
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF domain; pfam07645"
                     /db_xref="CDD:429571"
     Site            order(258,261,277)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238011"
     Region          304..351
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain; smart00179"
                     /db_xref="CDD:214542"
     Site            order(304,307,323)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238011"
     Region          352..385
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; cd00054"
                     /db_xref="CDD:238011"
     Site            order(352,355,371)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238011"
     Region          407..435
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          477..507
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; cl21504"
                     /db_xref="CDD:473889"
     Region          521..555
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF domain; pfam07645"
                     /db_xref="CDD:429571"
     CDS             1..679
                     /gene="FBLN1"
                     /coded_by="XM_009564938.2:442..2481"
                     /db_xref="GeneID:104062820"
ORIGIN      
        1 mdklggalll llavvpslrg qdlsmeeccd kgiewanknr ictslplvse srecsmtqvq
       61 ccrsqlekqy csdgvefanv reecdsqise nttceaesfk tccyccllgk taqvqgqsce
      121 pnlkigyqcg ivfraccvkg qegidvsisd dapkkeqvei skeeldqedp ylhdgcrggg
      181 pcsqqcrdtg ssyvcscfvg yqlqpdgvnc edinecitgt hscgigqtcv ntlgsfrcqr
      241 dtscgtgyel tddsrckdid ecetgthncp pdficqntpg sfrcrpklqc mngfiqdalg
      301 ncidinecls tnmpcpagqi cintdgsytc qrisptcgrg yhlnedgtrc vdvdecsssn
      361 qpcgeghvci napgnyrcec ksgysfdvis rtcidinecr rypgrlcahk centpgsyyc
      421 tctmgfklss dgrscedlne cesnpcsqec anvygsyqcy crrgfqlsdi dgiscedide
      481 calptgghic sfrcvnipgs fqctcpstgy rlapnarscq didecvaesh ncsfnetcfn
      541 iqggfrclsl ecpenyrksg dtrcerlpcn enkecqslpl rityyhlsfp tniqvpndif
      601 rmgpsnavpg dkillsiisg nqegffttkk vnnhsgivvm qrqiteprdl lltiqmqlsr
      661 hgtvntfiar lfifvsaql
//
LOCUS       XP_009563232             699 aa            linear   VRT 09-MAR-2023
DEFINITION  fibulin-1 isoform X2 [Cuculus canorus].
ACCESSION   XP_009563232
VERSION     XP_009563232.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009564937.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009563232.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..699
                     /product="fibulin-1 isoform X2"
                     /calculated_mol_wt=77207
     Region          90..151
                     /region_name="ANATO"
                     /note="Anaphylatoxin homologous domain; C3a, C4a and C5a
                     anaphylatoxins are protein fragments generated
                     enzymatically in serum during activation of complement
                     molecules C3, C4, and C5. They induce smooth muscle
                     contraction. These fragments are homologous to...;
                     cd00017"
                     /db_xref="CDD:237984"
     Region          180..210
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          212..239
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF domain; pfam07645"
                     /db_xref="CDD:429571"
     Site            order(212,215,231)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238011"
     Region          258..293
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF domain; pfam07645"
                     /db_xref="CDD:429571"
     Site            order(258,261,277)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238011"
     Region          304..351
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain; smart00179"
                     /db_xref="CDD:214542"
     Site            order(304,307,323)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238011"
     Region          352..385
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; cd00054"
                     /db_xref="CDD:238011"
     Site            order(352,355,371)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238011"
     Region          407..435
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          477..507
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; cl21504"
                     /db_xref="CDD:473889"
     Region          521..555
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF domain; pfam07645"
                     /db_xref="CDD:429571"
     CDS             1..699
                     /gene="FBLN1"
                     /coded_by="XM_009564937.2:346..2445"
                     /db_xref="GeneID:104062820"
ORIGIN      
        1 mdklggalll llavvpslrg qdlsmeeccd kgiewanknr ictslplvse srecsmtqvq
       61 ccrsqlekqy csdgvefanv reecdsqise nttceaesfk tccyccllgk taqvqgqsce
      121 pnlkigyqcg ivfraccvkg qegidvsisd dapkkeqvei skeeldqedp ylhdgcrggg
      181 pcsqqcrdtg ssyvcscfvg yqlqpdgvnc edinecitgt hscgigqtcv ntlgsfrcqr
      241 dtscgtgyel tddsrckdid ecetgthncp pdficqntpg sfrcrpklqc mngfiqdalg
      301 ncidinecls tnmpcpagqi cintdgsytc qrisptcgrg yhlnedgtrc vdvdecsssn
      361 qpcgeghvci napgnyrcec ksgysfdvis rtcidinecr rypgrlcahk centpgsyyc
      421 tctmgfklss dgrscedlne cesnpcsqec anvygsyqcy crrgfqlsdi dgiscedide
      481 calptgghic sfrcvnipgs fqctcpstgy rlapnarscq didecvaesh ncsfnetcfn
      541 iqggfrclsl ecpenyrksg dtvrhektdt ircikscrpn dvscvldpvh tishtvislp
      601 tfreftrpee iiflraitpt ypanqadiif ditegnlrds fdiikrymdg mtvgvvrqvr
      661 pivgpfhail klemnyvmgg vvshrnivnv hifvseywf
//
LOCUS       XP_053908717             444 aa            linear   VRT 09-MAR-2023
DEFINITION  cell adhesion molecule 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053908717
VERSION     XP_053908717.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052742.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..444
                     /product="cell adhesion molecule 2 isoform X1"
                     /calculated_mol_wt=48354
     Region          35..130
                     /region_name="IgV_1_Necl-3"
                     /note="First (N-terminal) immunoglobulin (Ig)-like domain
                     of nectin-like molecule-3; member of the V-set of Ig
                     superfamily (IgSF) domains; cd07701"
                     /db_xref="CDD:409498"
     Region          35..38
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409498"
     Region          36..54
                     /region_name="FR1"
                     /note="FR1 [structural motif]"
                     /db_xref="CDD:409498"
     Region          39..45
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409498"
     Region          47..55
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409498"
     Region          55..60
                     /region_name="CDR1"
                     /note="CDR1 [structural motif]"
                     /db_xref="CDD:409498"
     Site            order(61,64,69..70,72,78,80,116)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:409498"
     Region          61..68
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409498"
     Region          61..67
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409498"
     Region          69..80
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409498"
     Region          71..75
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409498"
     Region          77..80
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409498"
     Region          81..116
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409498"
     Region          85..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409498"
     Region          95..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409498"
     Region          108..116
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409498"
     Region          117..120
                     /region_name="CDR3"
                     /note="CDR3 [structural motif]"
                     /db_xref="CDD:409498"
     Region          120..130
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409498"
     Region          122..129
                     /region_name="FR4"
                     /note="FR4 [structural motif]"
                     /db_xref="CDD:409498"
     Region          129..232
                     /region_name="IgI_2_Necl-3"
                     /note="Second immunoglobulin (Ig)-like domain of
                     nectin-like molecule-3 (Necl-3); member of the I-set of Ig
                     superfamily domains; cd05884"
                     /db_xref="CDD:409467"
     Region          130..133
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409467"
     Region          136..140
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409467"
     Region          149..159
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409467"
     Region          162..171
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409467"
     Region          172..175
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409467"
     Region          177..184
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409467"
     Region          190..200
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409467"
     Region          208..216
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409467"
     Region          224..231
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409467"
     Region          236..309
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     Region          397..415
                     /region_name="4.1m"
                     /note="putative band 4.1 homologues' binding motif;
                     smart00294"
                     /db_xref="CDD:128590"
     CDS             1..444
                     /gene="CADM2"
                     /coded_by="XM_054052742.1:434..1768"
                     /db_xref="GeneID:104056030"
ORIGIN      
        1 mrlkpgallr fyslcgilvq vaasknkarg sqgqfpltqn vtvveggtan ltcrvdqndn
       61 tslqwsnpaq qtlyfddkka lrdnrielvr aswhelsisv sdvslsdegq ytcslftmpv
      121 ktskafltvl gvpekpqitg ftspvmeger mqltcktsgs kpaadirwfk ndkevkdvky
      181 lkeedanrkt ftvsstmdfl adrnddgavv scrvdhesln stpqiamqvl eihytplvki
      241 issnswpeeg qtiiltcesk gkpvpepvlw tkdggelpdp ermvvngril sisflnktdn
      301 gtyrceaknp igrnsteyvl ivhdvfntll pttvipsltt atvtttvalt tstttsatai
      361 sardpnalag qtgpdhalig givavvvfvt lcsiillgry larhkgtylt neakgaedap
      421 dadtaiinae gsqvnaeekk eyfi
//
LOCUS       XP_053908726             435 aa            linear   VRT 09-MAR-2023
DEFINITION  cell adhesion molecule 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053908726
VERSION     XP_053908726.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052751.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..435
                     /product="cell adhesion molecule 2 isoform X2"
                     /calculated_mol_wt=47428
     Region          26..121
                     /region_name="IgV_1_Necl-3"
                     /note="First (N-terminal) immunoglobulin (Ig)-like domain
                     of nectin-like molecule-3; member of the V-set of Ig
                     superfamily (IgSF) domains; cd07701"
                     /db_xref="CDD:409498"
     Region          26..29
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409498"
     Region          27..45
                     /region_name="FR1"
                     /note="FR1 [structural motif]"
                     /db_xref="CDD:409498"
     Region          30..36
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409498"
     Region          38..46
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409498"
     Region          46..51
                     /region_name="CDR1"
                     /note="CDR1 [structural motif]"
                     /db_xref="CDD:409498"
     Site            order(52,55,60..61,63,69,71,107)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:409498"
     Region          52..59
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409498"
     Region          52..58
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409498"
     Region          60..71
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409498"
     Region          62..66
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409498"
     Region          68..71
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409498"
     Region          72..107
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409498"
     Region          76..83
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409498"
     Region          86..92
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409498"
     Region          99..107
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409498"
     Region          108..111
                     /region_name="CDR3"
                     /note="CDR3 [structural motif]"
                     /db_xref="CDD:409498"
     Region          111..121
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409498"
     Region          113..120
                     /region_name="FR4"
                     /note="FR4 [structural motif]"
                     /db_xref="CDD:409498"
     Region          120..223
                     /region_name="IgI_2_Necl-3"
                     /note="Second immunoglobulin (Ig)-like domain of
                     nectin-like molecule-3 (Necl-3); member of the I-set of Ig
                     superfamily domains; cd05884"
                     /db_xref="CDD:409467"
     Region          121..124
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409467"
     Region          127..131
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409467"
     Region          140..150
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409467"
     Region          153..162
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409467"
     Region          163..166
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409467"
     Region          168..175
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409467"
     Region          181..191
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409467"
     Region          199..207
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409467"
     Region          215..222
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409467"
     Region          227..300
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     Region          388..406
                     /region_name="4.1m"
                     /note="putative band 4.1 homologues' binding motif;
                     smart00294"
                     /db_xref="CDD:128590"
     CDS             1..435
                     /gene="CADM2"
                     /coded_by="XM_054052751.1:428..1735"
                     /db_xref="GeneID:104056030"
ORIGIN      
        1 mrlkpgallr fyslcgilvq gsqgqfpltq nvtvveggta nltcrvdqnd ntslqwsnpa
       61 qqtlyfddkk alrdnrielv raswhelsis vsdvslsdeg qytcslftmp vktskafltv
      121 lgvpekpqit gftspvmege rmqltcktsg skpaadirwf kndkevkdvk ylkeedanrk
      181 tftvsstmdf ladrnddgav vscrvdhesl nstpqiamqv leihytplvk iissnswpee
      241 gqtiiltces kgkpvpepvl wtkdggelpd permvvngri lsisflnktd ngtyrceakn
      301 pigrnsteyv livhdvfntl lpttvipslt tatvtttval ttstttsata isardpnala
      361 gqtgpdhali ggivavvvfv tlcsiillgr ylarhkgtyl tneakgaeda pdadtaiina
      421 egsqvnaeek keyfi
//
LOCUS       XP_053908734             404 aa            linear   VRT 09-MAR-2023
DEFINITION  cell adhesion molecule 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053908734
VERSION     XP_053908734.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052759.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..404
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..404
                     /product="cell adhesion molecule 2 isoform X3"
                     /calculated_mol_wt=44332
     Region          35..130
                     /region_name="IgV_1_Necl-3"
                     /note="First (N-terminal) immunoglobulin (Ig)-like domain
                     of nectin-like molecule-3; member of the V-set of Ig
                     superfamily (IgSF) domains; cd07701"
                     /db_xref="CDD:409498"
     Region          35..38
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409498"
     Region          36..54
                     /region_name="FR1"
                     /note="FR1 [structural motif]"
                     /db_xref="CDD:409498"
     Region          39..45
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409498"
     Region          47..55
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409498"
     Region          55..60
                     /region_name="CDR1"
                     /note="CDR1 [structural motif]"
                     /db_xref="CDD:409498"
     Site            order(61,64,69..70,72,78,80,116)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:409498"
     Region          61..68
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409498"
     Region          61..67
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409498"
     Region          69..80
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409498"
     Region          71..75
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409498"
     Region          77..80
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409498"
     Region          81..116
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409498"
     Region          85..92
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409498"
     Region          95..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409498"
     Region          108..116
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409498"
     Region          117..120
                     /region_name="CDR3"
                     /note="CDR3 [structural motif]"
                     /db_xref="CDD:409498"
     Region          120..130
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409498"
     Region          122..129
                     /region_name="FR4"
                     /note="FR4 [structural motif]"
                     /db_xref="CDD:409498"
     Region          129..232
                     /region_name="IgI_2_Necl-3"
                     /note="Second immunoglobulin (Ig)-like domain of
                     nectin-like molecule-3 (Necl-3); member of the I-set of Ig
                     superfamily domains; cd05884"
                     /db_xref="CDD:409467"
     Region          130..133
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409467"
     Region          136..140
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409467"
     Region          149..159
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409467"
     Region          162..171
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409467"
     Region          172..175
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409467"
     Region          177..184
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409467"
     Region          190..200
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409467"
     Region          208..216
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409467"
     Region          224..231
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409467"
     Region          236..309
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     Region          357..375
                     /region_name="4.1m"
                     /note="putative band 4.1 homologues' binding motif;
                     smart00294"
                     /db_xref="CDD:128590"
     CDS             1..404
                     /gene="CADM2"
                     /coded_by="XM_054052759.1:427..1641"
                     /db_xref="GeneID:104056030"
ORIGIN      
        1 mrlkpgallr fyslcgilvq vaasknkarg sqgqfpltqn vtvveggtan ltcrvdqndn
       61 tslqwsnpaq qtlyfddkka lrdnrielvr aswhelsisv sdvslsdegq ytcslftmpv
      121 ktskafltvl gvpekpqitg ftspvmeger mqltcktsgs kpaadirwfk ndkevkdvky
      181 lkeedanrkt ftvsstmdfl adrnddgavv scrvdhesln stpqiamqvl eihytplvki
      241 issnswpeeg qtiiltcesk gkpvpepvlw tkdggelpdp ermvvngril sisflnktdn
      301 gtyrceaknp igrnsteyvl ivhdpnalag qtgpdhalig givavvvfvt lcsiillgry
      361 larhkgtylt neakgaedap dadtaiinae gsqvnaeekk eyfi
//
LOCUS       XP_053908751             459 aa            linear   VRT 09-MAR-2023
DEFINITION  G protein-activated inward rectifier potassium channel 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053908751
VERSION     XP_053908751.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052776.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..459
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..459
                     /product="G protein-activated inward rectifier potassium
                     channel 2 isoform X1"
                     /calculated_mol_wt=52569
     Region          93..232
                     /region_name="IRK"
                     /note="Inward rectifier potassium channel transmembrane
                     domain; pfam01007"
                     /db_xref="CDD:460023"
     Region          239..411
                     /region_name="IRK_C"
                     /note="Inward rectifier potassium channel C-terminal
                     domain; pfam17655"
                     /db_xref="CDD:465439"
     CDS             1..459
                     /gene="KCNJ6"
                     /coded_by="XM_054052776.1:23..1402"
                     /db_xref="GeneID:104059224"
ORIGIN      
        1 myyvskskkl kcshtilihq eqtlvqlclw traqasllap lckkanvlee dsmeqdiesp
       61 vtihqpklpk qaredlpkni nkecakrkiq ryvrkdgkcn vhhgnvrety ryltdifttl
      121 vdlkwrfnll ifvmvytvtw lffgmiwwli aymrgdmdhi gdstwtpcvs nlngfvsafl
      181 fsietettig ygyrvitdkc pegiilllvq svlgsivnaf mvgcmfvkis qpkkraetlv
      241 fstnavismr dgklclmfrv gdlrnshive asirakliks kqtkegefip lnqtdinvgy
      301 ytgddrlflv spliishein qqspfweisk aqlpkeelei vvilegmvea tgmtcqarss
      361 yitseilwgy rftpvltled gfyevdynsf hetyetntpv ysakelaema sraelpltws
      421 vsskldqhae leteeeeknl edqnerngdv anleneskv
//
LOCUS       XP_053908760             423 aa            linear   VRT 09-MAR-2023
DEFINITION  G protein-activated inward rectifier potassium channel 2 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053908760
VERSION     XP_053908760.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052785.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..423
                     /product="G protein-activated inward rectifier potassium
                     channel 2 isoform X2"
                     /calculated_mol_wt=48405
     Region          57..196
                     /region_name="IRK"
                     /note="Inward rectifier potassium channel transmembrane
                     domain; pfam01007"
                     /db_xref="CDD:460023"
     Region          203..375
                     /region_name="IRK_C"
                     /note="Inward rectifier potassium channel C-terminal
                     domain; pfam17655"
                     /db_xref="CDD:465439"
     CDS             1..423
                     /gene="KCNJ6"
                     /coded_by="XM_054052785.1:399..1670"
                     /db_xref="GeneID:104059224"
ORIGIN      
        1 makltesmtn vleedsmeqd iespvtihqp klpkqaredl pkninkecak rkiqryvrkd
       61 gkcnvhhgnv retyryltdi fttlvdlkwr fnllifvmvy tvtwlffgmi wwliaymrgd
      121 mdhigdstwt pcvsnlngfv saflfsiete ttigygyrvi tdkcpegiil llvqsvlgsi
      181 vnafmvgcmf vkisqpkkra etlvfstnav ismrdgklcl mfrvgdlrns hiveasirak
      241 likskqtkeg efiplnqtdi nvgyytgddr lflvspliis heinqqspfw eiskaqlpke
      301 eleivvileg mveatgmtcq arssyitsei lwgyrftpvl tledgfyevd ynsfhetyet
      361 ntpvysakel aemasraelp ltwsvsskld qhaeleteee eknledqner ngdvanlene
      421 skv
//
LOCUS       XP_053908767             423 aa            linear   VRT 09-MAR-2023
DEFINITION  G protein-activated inward rectifier potassium channel 2 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053908767
VERSION     XP_053908767.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052792.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..423
                     /product="G protein-activated inward rectifier potassium
                     channel 2 isoform X2"
                     /calculated_mol_wt=48405
     Region          57..196
                     /region_name="IRK"
                     /note="Inward rectifier potassium channel transmembrane
                     domain; pfam01007"
                     /db_xref="CDD:460023"
     Region          203..375
                     /region_name="IRK_C"
                     /note="Inward rectifier potassium channel C-terminal
                     domain; pfam17655"
                     /db_xref="CDD:465439"
     CDS             1..423
                     /gene="KCNJ6"
                     /coded_by="XM_054052792.1:111..1382"
                     /db_xref="GeneID:104059224"
ORIGIN      
        1 makltesmtn vleedsmeqd iespvtihqp klpkqaredl pkninkecak rkiqryvrkd
       61 gkcnvhhgnv retyryltdi fttlvdlkwr fnllifvmvy tvtwlffgmi wwliaymrgd
      121 mdhigdstwt pcvsnlngfv saflfsiete ttigygyrvi tdkcpegiil llvqsvlgsi
      181 vnafmvgcmf vkisqpkkra etlvfstnav ismrdgklcl mfrvgdlrns hiveasirak
      241 likskqtkeg efiplnqtdi nvgyytgddr lflvspliis heinqqspfw eiskaqlpke
      301 eleivvileg mveatgmtcq arssyitsei lwgyrftpvl tledgfyevd ynsfhetyet
      361 ntpvysakel aemasraelp ltwsvsskld qhaeleteee eknledqner ngdvanlene
      421 skv
//
LOCUS       XP_053908774             407 aa            linear   VRT 09-MAR-2023
DEFINITION  G protein-activated inward rectifier potassium channel 2 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053908774
VERSION     XP_053908774.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052799.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..407
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..407
                     /product="G protein-activated inward rectifier potassium
                     channel 2 isoform X3"
                     /calculated_mol_wt=46625
     Region          41..180
                     /region_name="IRK"
                     /note="Inward rectifier potassium channel transmembrane
                     domain; pfam01007"
                     /db_xref="CDD:460023"
     Region          187..359
                     /region_name="IRK_C"
                     /note="Inward rectifier potassium channel C-terminal
                     domain; pfam17655"
                     /db_xref="CDD:465439"
     CDS             1..407
                     /gene="KCNJ6"
                     /coded_by="XM_054052799.1:398..1621"
                     /db_xref="GeneID:104059224"
ORIGIN      
        1 meqdiespvt ihqpklpkqa redlpknink ecakrkiqry vrkdgkcnvh hgnvretyry
       61 ltdifttlvd lkwrfnllif vmvytvtwlf fgmiwwliay mrgdmdhigd stwtpcvsnl
      121 ngfvsaflfs ietettigyg yrvitdkcpe giilllvqsv lgsivnafmv gcmfvkisqp
      181 kkraetlvfs tnavismrdg klclmfrvgd lrnshiveas iraklikskq tkegefipln
      241 qtdinvgyyt gddrlflvsp liisheinqq spfweiskaq lpkeeleivv ilegmveatg
      301 mtcqarssyi tseilwgyrf tpvltledgf yevdynsfhe tyetntpvys akelaemasr
      361 aelpltwsvs skldqhaele teeeeknled qnerngdvan leneskv
//
LOCUS       XP_053908784             407 aa            linear   VRT 09-MAR-2023
DEFINITION  G protein-activated inward rectifier potassium channel 2 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053908784
VERSION     XP_053908784.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052809.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..407
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..407
                     /product="G protein-activated inward rectifier potassium
                     channel 2 isoform X3"
                     /calculated_mol_wt=46625
     Region          41..180
                     /region_name="IRK"
                     /note="Inward rectifier potassium channel transmembrane
                     domain; pfam01007"
                     /db_xref="CDD:460023"
     Region          187..359
                     /region_name="IRK_C"
                     /note="Inward rectifier potassium channel C-terminal
                     domain; pfam17655"
                     /db_xref="CDD:465439"
     CDS             1..407
                     /gene="KCNJ6"
                     /coded_by="XM_054052809.1:437..1660"
                     /db_xref="GeneID:104059224"
ORIGIN      
        1 meqdiespvt ihqpklpkqa redlpknink ecakrkiqry vrkdgkcnvh hgnvretyry
       61 ltdifttlvd lkwrfnllif vmvytvtwlf fgmiwwliay mrgdmdhigd stwtpcvsnl
      121 ngfvsaflfs ietettigyg yrvitdkcpe giilllvqsv lgsivnafmv gcmfvkisqp
      181 kkraetlvfs tnavismrdg klclmfrvgd lrnshiveas iraklikskq tkegefipln
      241 qtdinvgyyt gddrlflvsp liisheinqq spfweiskaq lpkeeleivv ilegmveatg
      301 mtcqarssyi tseilwgyrf tpvltledgf yevdynsfhe tyetntpvys akelaemasr
      361 aelpltwsvs skldqhaele teeeeknled qnerngdvan leneskv
//
LOCUS       XP_053908789             407 aa            linear   VRT 09-MAR-2023
DEFINITION  G protein-activated inward rectifier potassium channel 2 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053908789
VERSION     XP_053908789.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052814.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..407
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..407
                     /product="G protein-activated inward rectifier potassium
                     channel 2 isoform X3"
                     /calculated_mol_wt=46625
     Region          41..180
                     /region_name="IRK"
                     /note="Inward rectifier potassium channel transmembrane
                     domain; pfam01007"
                     /db_xref="CDD:460023"
     Region          187..359
                     /region_name="IRK_C"
                     /note="Inward rectifier potassium channel C-terminal
                     domain; pfam17655"
                     /db_xref="CDD:465439"
     CDS             1..407
                     /gene="KCNJ6"
                     /coded_by="XM_054052814.1:114..1337"
                     /db_xref="GeneID:104059224"
ORIGIN      
        1 meqdiespvt ihqpklpkqa redlpknink ecakrkiqry vrkdgkcnvh hgnvretyry
       61 ltdifttlvd lkwrfnllif vmvytvtwlf fgmiwwliay mrgdmdhigd stwtpcvsnl
      121 ngfvsaflfs ietettigyg yrvitdkcpe giilllvqsv lgsivnafmv gcmfvkisqp
      181 kkraetlvfs tnavismrdg klclmfrvgd lrnshiveas iraklikskq tkegefipln
      241 qtdinvgyyt gddrlflvsp liisheinqq spfweiskaq lpkeeleivv ilegmveatg
      301 mtcqarssyi tseilwgyrf tpvltledgf yevdynsfhe tyetntpvys akelaemasr
      361 aelpltwsvs skldqhaele teeeeknled qnerngdvan leneskv
//
LOCUS       XP_053908798             361 aa            linear   VRT 09-MAR-2023
DEFINITION  G protein-activated inward rectifier potassium channel 2 isoform X4
            [Cuculus canorus].
ACCESSION   XP_053908798
VERSION     XP_053908798.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052823.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..361
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..361
                     /product="G protein-activated inward rectifier potassium
                     channel 2 isoform X4"
                     /calculated_mol_wt=41334
     Region          93..232
                     /region_name="IRK"
                     /note="Inward rectifier potassium channel transmembrane
                     domain; pfam01007"
                     /db_xref="CDD:460023"
     Region          239..>352
                     /region_name="IRK_C"
                     /note="Inward rectifier potassium channel C-terminal
                     domain; pfam17655"
                     /db_xref="CDD:465439"
     CDS             1..361
                     /gene="KCNJ6"
                     /coded_by="XM_054052823.1:37..1122"
                     /db_xref="GeneID:104059224"
ORIGIN      
        1 myyvskskkl kcshtilihq eqtlvqlclw traqasllap lckkanvlee dsmeqdiesp
       61 vtihqpklpk qaredlpkni nkecakrkiq ryvrkdgkcn vhhgnvrety ryltdifttl
      121 vdlkwrfnll ifvmvytvtw lffgmiwwli aymrgdmdhi gdstwtpcvs nlngfvsafl
      181 fsietettig ygyrvitdkc pegiilllvq svlgsivnaf mvgcmfvkis qpkkraetlv
      241 fstnavismr dgklclmfrv gdlrnshive asirakliks kqtkegefip lnqtdinvgy
      301 ytgddrlflv spliishein qqspfweisk aqlpkeelei vvilegmvea tgnisytlyk
      361 e
//
LOCUS       XP_009555255             273 aa            linear   VRT 09-MAR-2023
DEFINITION  TIP41-like protein [Cuculus canorus].
ACCESSION   XP_009555255
VERSION     XP_009555255.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556960.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..273
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..273
                     /product="TIP41-like protein"
                     /calculated_mol_wt=31476
     Region          49..217
                     /region_name="TIP41"
                     /note="TIP41-like family; pfam04176"
                     /db_xref="CDD:461208"
     CDS             1..273
                     /gene="TIPRL"
                     /coded_by="XM_009556960.2:134..955"
                     /db_xref="GeneID:104055782"
ORIGIN      
        1 mhpvfqssrr dftfgpwkls aarthimksa qaerladelh mpslpemmfg dnilriqhdh
       61 gfgiefnatd alkcvnncqg mikvacaeew qesrsetept kevvkpydwt yttdykgtll
      121 gdtarlkvvp ttehintekl kareqimffe evllfedelh dhgvsslsvk irvmpssffv
      181 llrfflrvdg vlirmndtrl hheadkpyml reytsreski sslkhvppsl ftepneisqy
      241 lpiketvcek lefpeklepk petlletacv ksk
//
LOCUS       XP_053908823             478 aa            linear   VRT 09-MAR-2023
DEFINITION  hyaluronidase-1-like [Cuculus canorus].
ACCESSION   XP_053908823
VERSION     XP_053908823.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052848.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..478
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..478
                     /product="hyaluronidase-1-like"
                     /calculated_mol_wt=55110
     Region          28..361
                     /region_name="Glyco_hydro_56"
                     /note="Hyaluronidase; pfam01630"
                     /db_xref="CDD:460272"
     CDS             1..478
                     /gene="LOC104055301"
                     /coded_by="XM_054052848.1:661..2097"
                     /db_xref="GeneID:104055301"
ORIGIN      
        1 mdvwfkplav tvlltmvdaq lpkparapla lhkpfmvvwn apteqcrlry kvdldlsvfd
       61 ivsntnetls gsnvtifyht hlgyypyysd ngdpvnggvp qneslikhln kaksdidyci
      121 pmkkfqglav idwenwrpqw drnwghksiy rnkslemvrr rhpqwsedki rkvakeefen
      181 agksfmnnti llaehmrpng lwgyylypdc ynydykehpq tytgkcpaie sarndlllwl
      241 wkestalyps vyldymlkss tnalkfvhyr vkeairvasi arkdyvlpvf vysrpfyayt
      301 fhvltetdlv ntigesaalg aagvvlwgsm qyasskescs tvkryidgpl ghyvinvtsa
      361 aklcskvlck kngrcirkns dssaylhlpp tnfkirachs ervprfqvtg epslenieam
      421 rqrfmcqcyq gwtgifcelp dqrlmehwvh agfsrprkqk lyvlllgamq llllhtah
//
LOCUS       XP_053908832             478 aa            linear   VRT 09-MAR-2023
DEFINITION  hyaluronidase-1-like [Cuculus canorus].
ACCESSION   XP_053908832
VERSION     XP_053908832.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052857.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..478
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..478
                     /product="hyaluronidase-1-like"
                     /calculated_mol_wt=55110
     Region          28..361
                     /region_name="Glyco_hydro_56"
                     /note="Hyaluronidase; pfam01630"
                     /db_xref="CDD:460272"
     CDS             1..478
                     /gene="LOC104055301"
                     /coded_by="XM_054052857.1:111..1547"
                     /db_xref="GeneID:104055301"
ORIGIN      
        1 mdvwfkplav tvlltmvdaq lpkparapla lhkpfmvvwn apteqcrlry kvdldlsvfd
       61 ivsntnetls gsnvtifyht hlgyypyysd ngdpvnggvp qneslikhln kaksdidyci
      121 pmkkfqglav idwenwrpqw drnwghksiy rnkslemvrr rhpqwsedki rkvakeefen
      181 agksfmnnti llaehmrpng lwgyylypdc ynydykehpq tytgkcpaie sarndlllwl
      241 wkestalyps vyldymlkss tnalkfvhyr vkeairvasi arkdyvlpvf vysrpfyayt
      301 fhvltetdlv ntigesaalg aagvvlwgsm qyasskescs tvkryidgpl ghyvinvtsa
      361 aklcskvlck kngrcirkns dssaylhlpp tnfkirachs ervprfqvtg epslenieam
      421 rqrfmcqcyq gwtgifcelp dqrlmehwvh agfsrprkqk lyvlllgamq llllhtah
//
LOCUS       XP_053908860             254 aa            linear   VRT 09-MAR-2023
DEFINITION  guanylyl cyclase-activating protein 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053908860
VERSION     XP_053908860.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052885.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..254
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..254
                     /product="guanylyl cyclase-activating protein 3 isoform
                     X1"
                     /calculated_mol_wt=29243
     Region          <132..225
                     /region_name="FRQ1"
                     /note="Ca2+-binding protein, EF-hand superfamily [Signal
                     transduction mechanisms]; COG5126"
                     /db_xref="CDD:444056"
     CDS             1..254
                     /gene="GUCA1C"
                     /coded_by="XM_054052885.1:325..1089"
                     /db_xref="GeneID:104055960"
ORIGIN      
        1 mcdrpgclpf iplstlkkll hlsndkknhl resierhqkk lenlqsrrse haavfgfilw
       61 drlvlsctgl hlpeygsles wcalghktiy wsflrkwdlf yptvsallfn evgikqctil
      121 twlphhlqvf crdgfidfle fiaainlvir gkidqklkwy fklydadgng cidkkellsi
      181 faaiqaingh tnmsaeeftn mifqkidvnn dgeltleefi ngvesdkdlm elitksfdls
      241 nvlkviqngr rhsv
//
LOCUS       XP_053908869             253 aa            linear   VRT 09-MAR-2023
DEFINITION  guanylyl cyclase-activating protein 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053908869
VERSION     XP_053908869.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052894.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..253
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..253
                     /product="guanylyl cyclase-activating protein 3 isoform
                     X2"
                     /calculated_mol_wt=28891
     CDS             1..253
                     /gene="GUCA1C"
                     /coded_by="XM_054052894.1:333..1094"
                     /db_xref="GeneID:104055960"
ORIGIN      
        1 mcdrpgclpf iplstlkkll hlsndkknhl resierhqkk lenlqsrrse haavfgfilw
       61 drlvlsctgl hlpeygsles wcalghktiy wsflrkwdlf yptvsallfn evgikqctil
      121 twlphhlqvf crirlktyys trkvknhrms cvgrdpqgsl sptpvptqdn pnihamclka
      181 slkcflntvs igaitaslgs lfhcsitlwv knlflisnlt ilwhiflpfs qalslvtmkk
      241 rsvpappslm rkq
//
LOCUS       XP_053908875             238 aa            linear   VRT 09-MAR-2023
DEFINITION  guanylyl cyclase-activating protein 3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053908875
VERSION     XP_053908875.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052900.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..238
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..238
                     /product="guanylyl cyclase-activating protein 3 isoform
                     X3"
                     /calculated_mol_wt=26948
     Region          <103..>161
                     /region_name="EFh_DMD_DYTN_DTN"
                     /note="EF-hand-like motif found in the
                     dystrophin/dystrobrevin/dystrotelin family; cl07621"
                     /db_xref="CDD:352774"
     Region          140..207
                     /region_name="EFh"
                     /note="EF-hand, calcium binding motif; A diverse
                     superfamily of calcium sensors and calcium signal
                     modulators; most examples in this alignment model have 2
                     active canonical EF hands. Ca2+ binding induces a
                     conformational change in the EF-hand motif, leading to...;
                     cd00051"
                     /db_xref="CDD:238008"
     Site            order(149,151,153,160,191,193,195,202)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238008"
     CDS             1..238
                     /gene="GUCA1C"
                     /coded_by="XM_054052900.1:801..1517"
                     /db_xref="GeneID:104055960"
ORIGIN      
        1 mlpilgsggs lrsmkscaal hilctllpyp qrsehaavfg filwdrlvls ctglhlpeyg
       61 sleswcalgh ktiywsflrk wdlfyptvsa llfnevgikq ctiltwlphh lqvfcrdgfi
      121 dflefiaain lvirgkidqk lkwyfklyda dgngcidkke llsifaaiqa inghtnmsae
      181 eftnmifqki dvnndgeltl eefingvesd kdlmelitks fdlsnvlkvi qngrrhsv
//
LOCUS       XP_053908884             238 aa            linear   VRT 09-MAR-2023
DEFINITION  guanylyl cyclase-activating protein 3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053908884
VERSION     XP_053908884.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052909.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..238
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..238
                     /product="guanylyl cyclase-activating protein 3 isoform
                     X3"
                     /calculated_mol_wt=26948
     Region          <103..>161
                     /region_name="EFh_DMD_DYTN_DTN"
                     /note="EF-hand-like motif found in the
                     dystrophin/dystrobrevin/dystrotelin family; cl07621"
                     /db_xref="CDD:352774"
     Region          140..207
                     /region_name="EFh"
                     /note="EF-hand, calcium binding motif; A diverse
                     superfamily of calcium sensors and calcium signal
                     modulators; most examples in this alignment model have 2
                     active canonical EF hands. Ca2+ binding induces a
                     conformational change in the EF-hand motif, leading to...;
                     cd00051"
                     /db_xref="CDD:238008"
     Site            order(149,151,153,160,191,193,195,202)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238008"
     CDS             1..238
                     /gene="GUCA1C"
                     /coded_by="XM_054052909.1:254..970"
                     /db_xref="GeneID:104055960"
ORIGIN      
        1 mlpilgsggs lrsmkscaal hilctllpyp qrsehaavfg filwdrlvls ctglhlpeyg
       61 sleswcalgh ktiywsflrk wdlfyptvsa llfnevgikq ctiltwlphh lqvfcrdgfi
      121 dflefiaain lvirgkidqk lkwyfklyda dgngcidkke llsifaaiqa inghtnmsae
      181 eftnmifqki dvnndgeltl eefingvesd kdlmelitks fdlsnvlkvi qngrrhsv
//
LOCUS       XP_053908892             209 aa            linear   VRT 09-MAR-2023
DEFINITION  guanylyl cyclase-activating protein 3 isoform X4 [Cuculus canorus].
ACCESSION   XP_053908892
VERSION     XP_053908892.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052917.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..209
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..209
                     /product="guanylyl cyclase-activating protein 3 isoform
                     X4"
                     /calculated_mol_wt=23954
     Region          <87..180
                     /region_name="FRQ1"
                     /note="Ca2+-binding protein, EF-hand superfamily [Signal
                     transduction mechanisms]; COG5126"
                     /db_xref="CDD:444056"
     CDS             1..209
                     /gene="GUCA1C"
                     /coded_by="XM_054052917.1:97..726"
                     /db_xref="GeneID:104055960"
ORIGIN      
        1 mkrsehaavf gfilwdrlvl sctglhlpey gsleswcalg hktiywsflr kwdlfyptvs
       61 allfnevgik qctiltwlph hlqvfcrdgf idflefiaai nlvirgkidq klkwyfklyd
      121 adgngcidkk ellsifaaiq ainghtnmsa eeftnmifqk idvnndgelt leefingves
      181 dkdlmelitk sfdlsnvlkv iqngrrhsv
//
LOCUS       XP_009555449             190 aa            linear   VRT 09-MAR-2023
DEFINITION  guanylyl cyclase-activating protein 3 isoform X5 [Cuculus canorus].
ACCESSION   XP_009555449
VERSION     XP_009555449.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557154.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..190
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..190
                     /product="guanylyl cyclase-activating protein 3 isoform
                     X5"
                     /calculated_mol_wt=21541
     Region          43..161
                     /region_name="FRQ1"
                     /note="Ca2+-binding protein, EF-hand superfamily [Signal
                     transduction mechanisms]; COG5126"
                     /db_xref="CDD:444056"
     CDS             1..190
                     /gene="GUCA1C"
                     /coded_by="XM_009557154.2:88..660"
                     /db_xref="GeneID:104055960"
ORIGIN      
        1 mfdamgaags addinameih hwytkfmkec psgqlclhef khvldlhglt peannyveqv
       61 fhtfdmnkdg fidflefiaa inlvirgkid qklkwyfkly dadgngcidk kellsifaai
      121 qainghtnms aeeftnmifq kidvnndgel tleefingve sdkdlmelit ksfdlsnvlk
      181 viqngrrhsv
//
LOCUS       XP_009555450             187 aa            linear   VRT 09-MAR-2023
DEFINITION  guanylyl cyclase-activating protein 3 isoform X6 [Cuculus canorus].
ACCESSION   XP_009555450
VERSION     XP_009555450.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557155.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555450.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..187
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..187
                     /product="guanylyl cyclase-activating protein 3 isoform
                     X6"
                     /calculated_mol_wt=21099
     Region          29..158
                     /region_name="FRQ1"
                     /note="Ca2+-binding protein, EF-hand superfamily [Signal
                     transduction mechanisms]; COG5126"
                     /db_xref="CDD:444056"
     CDS             1..187
                     /gene="GUCA1C"
                     /coded_by="XM_009557155.2:65..628"
                     /db_xref="GeneID:104055960"
ORIGIN      
        1 mgageslpgd gsilemhhyy skfmrecpsg qlslhefkkl lglqgldpqg diyikrvfdi
       61 fdlnqdgfid flefiaainl virgkidqkl kwyfklydad gngcidkkel lsifaaiqai
      121 nghtnmsaee ftnmifqkid vnndgeltle efingvesdk dlmelitksf dlsnvlkviq
      181 ngrrhsv
//
LOCUS       XP_053908919             159 aa            linear   VRT 09-MAR-2023
DEFINITION  guanylyl cyclase-activating protein 3 isoform X7 [Cuculus canorus].
ACCESSION   XP_053908919
VERSION     XP_053908919.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052944.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..159
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..159
                     /product="guanylyl cyclase-activating protein 3 isoform
                     X7"
                     /calculated_mol_wt=18427
     CDS             1..159
                     /gene="GUCA1C"
                     /coded_by="XM_054052944.1:343..822"
                     /db_xref="GeneID:104055960"
ORIGIN      
        1 mcdrpgclpf iplstlkkll hlsndkknhl resierhqkk lenlqsrrse haavfgfilw
       61 drlvlsctgl hlpeygsles wcalghktiy wsflrkwdlf yptvsallfn evgikqctil
      121 twlphhlqvf crwatsnyll evplqkvekt qalesslpn
//
LOCUS       XP_053908930             120 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein C3orf85 homolog [Cuculus canorus].
ACCESSION   XP_053908930
VERSION     XP_053908930.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052955.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..120
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..120
                     /product="uncharacterized protein C3orf85 homolog"
                     /calculated_mol_wt=13487
     CDS             1..120
                     /gene="C1H3orf85"
                     /coded_by="XM_054052955.1:57..419"
                     /db_xref="GeneID:128850046"
ORIGIN      
        1 mslkmfqilv sallftasis gvlgapflte esanqfirlk rqipysqsyw dpsssqnawg
       61 yalaeqvses wtalrdiaqy ymdlsssafh psiasdnirs ymdmlqqsgt hlqqqtrmsy
//
LOCUS       XP_009556222             373 aa            linear   VRT 09-MAR-2023
DEFINITION  lipoyltransferase 1, mitochondrial [Cuculus canorus].
ACCESSION   XP_009556222
VERSION     XP_009556222.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557927.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556222.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..373
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..373
                     /product="lipoyltransferase 1, mitochondrial"
                     /calculated_mol_wt=42213
     Region          31..336
                     /region_name="BPL_LplA_LipB"
                     /note="biotin-lipoate ligase family; cl14057"
                     /db_xref="CDD:449326"
     Site            order(66,99,104..108,112,114,151,161..165,177..179,181)
                     /site_type="active"
                     /db_xref="CDD:319742"
     CDS             1..373
                     /gene="LIPT1"
                     /coded_by="XM_009557927.2:817..1938"
                     /db_xref="GeneID:104056654"
ORIGIN      
        1 mvlpsllknc lqlscilrtp kagfrsttsg gliiqsvsnd vyqnlavedw ihdhmdlenq
       61 qvlflwrnsp avvigrhqnp wqecnlrlmr qkniklarrr sgggtvyhdl gninltfftt
      121 rkkyermanl klvvkalkal rpqlevhvtd rydilldrqy kisgtaaklg ratayhhctl
      181 lckadtfvls svlkspykgi ksnatpsvsa svknlfeedp sltyemllna iaeeyamqhq
      241 vdhhitlinp adetvlpgin nktkelqtwe wlygktpkfs vstcfnmvyk dsvldvkvdm
      301 dvkhgrieac nidlpeqwlp palcselvkn lagskfcpde tttlatallr gcpqddelhs
      361 rwnllcknmi mlm
//
LOCUS       XP_053908962             250 aa            linear   VRT 09-MAR-2023
DEFINITION  MIT domain-containing protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053908962
VERSION     XP_053908962.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054052987.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..250
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..250
                     /product="MIT domain-containing protein 1 isoform X1"
                     /calculated_mol_wt=29049
     Region          11..87
                     /region_name="MIT_1"
                     /note="MIT: domain contained within Microtubule
                     Interacting and Trafficking molecules. This sub-family of
                     MIT domains is found in proteins with unknown function,
                     co-occuring with an as yet undescribed domain. The
                     molecular function of the MIT domain is unclear; cd02683"
                     /db_xref="CDD:239146"
     Region          98..246
                     /region_name="MIT_C"
                     /note="domain found C-terminal to MIT (contained within
                     Microtubule Interacting and Trafficking molecules)
                     domains, as well as in some bacterial proteins. The
                     function of this domain is unknown; cd02685"
                     /db_xref="CDD:239148"
     CDS             1..250
                     /gene="MITD1"
                     /coded_by="XM_054052987.1:74..826"
                     /db_xref="GeneID:104056653"
ORIGIN      
        1 msrasgdgta aleragaetv kraveldras rfqeslvcyq egidlllqvv katkdeakkh
       61 ryrqkiseym traedikrhi ekekqdgkyh kqirieenat gfgyeklfqe ylteivsevw
      121 vedpyirhvh qlynflrfce mlvkgpckvk tihlltsyde gsgktqqing leeiqqslrn
      181 ygvtldiafs ssihdreirf nngwmikigr gldyfkkpqg rfsigycdfd lrpchettvd
      241 vfhtkhtkkm
//
LOCUS       XP_053908975             181 aa            linear   VRT 09-MAR-2023
DEFINITION  MIT domain-containing protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053908975
VERSION     XP_053908975.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053000.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..181
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..181
                     /product="MIT domain-containing protein 1 isoform X2"
                     /calculated_mol_wt=21294
     Region          <1..18
                     /region_name="MIT"
                     /note="domain contained within Microtubule Interacting and
                     Trafficking molecules. The MIT domain is found in sorting
                     nexins, the nuclear thiol protease PalBH, the AAA protein
                     spastin and archaebacterial proteins with similar domain
                     architecture, vacuolar...; cl00299"
                     /db_xref="CDD:469712"
     Region          29..177
                     /region_name="MIT_C"
                     /note="domain found C-terminal to MIT (contained within
                     Microtubule Interacting and Trafficking molecules)
                     domains, as well as in some bacterial proteins. The
                     function of this domain is unknown; cd02685"
                     /db_xref="CDD:239148"
     CDS             1..181
                     /gene="MITD1"
                     /coded_by="XM_054053000.1:212..757"
                     /db_xref="GeneID:104056653"
ORIGIN      
        1 mtraedikrh iekekqdgky hkqirieena tgfgyeklfq eylteivsev wvedpyirhv
       61 hqlynflrfc emlvkgpckv ktihlltsyd egsgktqqin gleeiqqslr nygvtldiaf
      121 sssihdreir fnngwmikig rgldyfkkpq grfsigycdf dlrpchettv dvfhtkhtkk
      181 m
//
LOCUS       XP_053908984             181 aa            linear   VRT 09-MAR-2023
DEFINITION  MIT domain-containing protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053908984
VERSION     XP_053908984.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053009.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..181
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..181
                     /product="MIT domain-containing protein 1 isoform X2"
                     /calculated_mol_wt=21294
     Region          <1..18
                     /region_name="MIT"
                     /note="domain contained within Microtubule Interacting and
                     Trafficking molecules. The MIT domain is found in sorting
                     nexins, the nuclear thiol protease PalBH, the AAA protein
                     spastin and archaebacterial proteins with similar domain
                     architecture, vacuolar...; cl00299"
                     /db_xref="CDD:469712"
     Region          29..177
                     /region_name="MIT_C"
                     /note="domain found C-terminal to MIT (contained within
                     Microtubule Interacting and Trafficking molecules)
                     domains, as well as in some bacterial proteins. The
                     function of this domain is unknown; cd02685"
                     /db_xref="CDD:239148"
     CDS             1..181
                     /gene="MITD1"
                     /coded_by="XM_054053009.1:184..729"
                     /db_xref="GeneID:104056653"
ORIGIN      
        1 mtraedikrh iekekqdgky hkqirieena tgfgyeklfq eylteivsev wvedpyirhv
       61 hqlynflrfc emlvkgpckv ktihlltsyd egsgktqqin gleeiqqslr nygvtldiaf
      121 sssihdreir fnngwmikig rgldyfkkpq grfsigycdf dlrpchettv dvfhtkhtkk
      181 m
//
LOCUS       XP_053908993             181 aa            linear   VRT 09-MAR-2023
DEFINITION  MIT domain-containing protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053908993
VERSION     XP_053908993.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053018.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..181
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..181
                     /product="MIT domain-containing protein 1 isoform X2"
                     /calculated_mol_wt=21294
     Region          <1..18
                     /region_name="MIT"
                     /note="domain contained within Microtubule Interacting and
                     Trafficking molecules. The MIT domain is found in sorting
                     nexins, the nuclear thiol protease PalBH, the AAA protein
                     spastin and archaebacterial proteins with similar domain
                     architecture, vacuolar...; cl00299"
                     /db_xref="CDD:469712"
     Region          29..177
                     /region_name="MIT_C"
                     /note="domain found C-terminal to MIT (contained within
                     Microtubule Interacting and Trafficking molecules)
                     domains, as well as in some bacterial proteins. The
                     function of this domain is unknown; cd02685"
                     /db_xref="CDD:239148"
     CDS             1..181
                     /gene="MITD1"
                     /coded_by="XM_054053018.1:182..727"
                     /db_xref="GeneID:104056653"
ORIGIN      
        1 mtraedikrh iekekqdgky hkqirieena tgfgyeklfq eylteivsev wvedpyirhv
       61 hqlynflrfc emlvkgpckv ktihlltsyd egsgktqqin gleeiqqslr nygvtldiaf
      121 sssihdreir fnngwmikig rgldyfkkpq grfsigycdf dlrpchettv dvfhtkhtkk
      181 m
//
LOCUS       XP_053909004             226 aa            linear   VRT 09-MAR-2023
DEFINITION  thioredoxin domain-containing protein 9 [Cuculus canorus].
ACCESSION   XP_053909004
VERSION     XP_053909004.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053029.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..226
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..226
                     /product="thioredoxin domain-containing protein 9"
                     /calculated_mol_wt=26256
     Region          68..180
                     /region_name="Phd_like_TxnDC9"
                     /note="Phosducin (Phd)-like family, Thioredoxin (TRX)
                     domain containing protein 9 (TxnDC9) subfamily; composed
                     of predominantly uncharacterized eukaryotic proteins,
                     containing a TRX-like domain without the redox active CXXC
                     motif. The gene name for the human...; cd02989"
                     /db_xref="CDD:239287"
     CDS             1..226
                     /gene="TXNDC9"
                     /coded_by="XM_054053029.1:168..848"
                     /db_xref="GeneID:104056649"
ORIGIN      
        1 maadtsveil qkvleneilq ttkvveehld aelqkldqmd edelerlkqr rlealkkaqq
       61 qkqewlskgh geyreipser dffqevkesk nvvchfyrdt tfrcqimdkh ltvlakkhie
      121 tkflklnaek spflcerlri kviptvalvk dgktkdyivg ftdlgntddf ttetlewrlg
      181 cadiinysgn lmdppfqsqk kygtsftkld kktirgkkyd sdsddd
//
LOCUS       XP_053909013             226 aa            linear   VRT 09-MAR-2023
DEFINITION  thioredoxin domain-containing protein 9 [Cuculus canorus].
ACCESSION   XP_053909013
VERSION     XP_053909013.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053038.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..226
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..226
                     /product="thioredoxin domain-containing protein 9"
                     /calculated_mol_wt=26256
     Region          68..180
                     /region_name="Phd_like_TxnDC9"
                     /note="Phosducin (Phd)-like family, Thioredoxin (TRX)
                     domain containing protein 9 (TxnDC9) subfamily; composed
                     of predominantly uncharacterized eukaryotic proteins,
                     containing a TRX-like domain without the redox active CXXC
                     motif. The gene name for the human...; cd02989"
                     /db_xref="CDD:239287"
     CDS             1..226
                     /gene="TXNDC9"
                     /coded_by="XM_054053038.1:210..890"
                     /db_xref="GeneID:104056649"
ORIGIN      
        1 maadtsveil qkvleneilq ttkvveehld aelqkldqmd edelerlkqr rlealkkaqq
       61 qkqewlskgh geyreipser dffqevkesk nvvchfyrdt tfrcqimdkh ltvlakkhie
      121 tkflklnaek spflcerlri kviptvalvk dgktkdyivg ftdlgntddf ttetlewrlg
      181 cadiinysgn lmdppfqsqk kygtsftkld kktirgkkyd sdsddd
//
LOCUS       XP_009556220             204 aa            linear   VRT 09-MAR-2023
DEFINITION  lysozyme g [Cuculus canorus].
ACCESSION   XP_009556220
VERSION     XP_009556220.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557925.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556220.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..204
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..204
                     /product="lysozyme g"
                     /calculated_mol_wt=22524
     Region          31..203
                     /region_name="GEWL"
                     /note="Goose egg-white lysozyme; cd01021"
                     /db_xref="CDD:381601"
     Site            order(92,114..116,119..120,138,142,166..167,169)
                     /site_type="other"
                     /note="sugar binding site [chemical binding]"
                     /db_xref="CDD:381601"
     CDS             1..204
                     /gene="LOC104056651"
                     /coded_by="XM_009557925.2:152..766"
                     /db_xref="GeneID:104056651"
ORIGIN      
        1 mypmlvllgl tallgasqgy pdcygsvsri ntpgasckta raerlsycev rasekiaerd
       61 leamnqyktl ikkvgeklci epaliagiis reshagkvlk ngwgdngngf glmqvdrnsh
      121 tprgqwnsea hltqgttili eminriqkkf ptwtkdqqlk ggisaynagd knvrsydrmd
      181 igttnddysn dvvaraqyyk khgf
//
LOCUS       XP_053909032             199 aa            linear   VRT 09-MAR-2023
DEFINITION  lysozyme g [Cuculus canorus].
ACCESSION   XP_053909032
VERSION     XP_053909032.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053057.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..199
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..199
                     /product="lysozyme g"
                     /calculated_mol_wt=22355
     Region          32..198
                     /region_name="Lyz-like"
                     /note="lysozyme-like domains; cl00222"
                     /db_xref="CDD:469668"
     CDS             1..199
                     /gene="LOC104056650"
                     /coded_by="XM_054053057.1:1521..2120"
                     /db_xref="GeneID:104056650"
ORIGIN      
        1 mipgllllgl malvapstsy scygdistlq aptlsctavr apdcglavvr riaeadvvrl
       61 rkyeipikrv arnlcldpal iagiisqesr vglllnngwd qqqqkyglmq igrqrrypyt
      121 vwdseehinq gstmlvlain evrarhptwt wdrqlrggic nyrakmgnfq vyeedpcdgd
      181 nyyvnsvigr aqyfkthgf
//
LOCUS       XP_009556219             199 aa            linear   VRT 09-MAR-2023
DEFINITION  lysozyme g [Cuculus canorus].
ACCESSION   XP_009556219
VERSION     XP_009556219.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557924.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556219.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..199
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..199
                     /product="lysozyme g"
                     /calculated_mol_wt=22355
     Region          32..198
                     /region_name="Lyz-like"
                     /note="lysozyme-like domains; cl00222"
                     /db_xref="CDD:469668"
     CDS             1..199
                     /gene="LOC104056650"
                     /coded_by="XM_009557924.2:505..1104"
                     /db_xref="GeneID:104056650"
ORIGIN      
        1 mipgllllgl malvapstsy scygdistlq aptlsctavr apdcglavvr riaeadvvrl
       61 rkyeipikrv arnlcldpal iagiisqesr vglllnngwd qqqqkyglmq igrqrrypyt
      121 vwdseehinq gstmlvlain evrarhptwt wdrqlrggic nyrakmgnfq vyeedpcdgd
      181 nyyvnsvigr aqyfkthgf
//
LOCUS       XP_053909047             199 aa            linear   VRT 09-MAR-2023
DEFINITION  lysozyme g [Cuculus canorus].
ACCESSION   XP_053909047
VERSION     XP_053909047.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053072.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..199
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..199
                     /product="lysozyme g"
                     /calculated_mol_wt=22355
     Region          32..198
                     /region_name="Lyz-like"
                     /note="lysozyme-like domains; cl00222"
                     /db_xref="CDD:469668"
     CDS             1..199
                     /gene="LOC104056650"
                     /coded_by="XM_054053072.1:1459..2058"
                     /db_xref="GeneID:104056650"
ORIGIN      
        1 mipgllllgl malvapstsy scygdistlq aptlsctavr apdcglavvr riaeadvvrl
       61 rkyeipikrv arnlcldpal iagiisqesr vglllnngwd qqqqkyglmq igrqrrypyt
      121 vwdseehinq gstmlvlain evrarhptwt wdrqlrggic nyrakmgnfq vyeedpcdgd
      181 nyyvnsvigr aqyfkthgf
//
LOCUS       XP_053909058             185 aa            linear   VRT 09-MAR-2023
DEFINITION  lysozyme g [Cuculus canorus].
ACCESSION   XP_053909058
VERSION     XP_053909058.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053083.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..185
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..185
                     /product="lysozyme g"
                     /calculated_mol_wt=20287
     Region          12..184
                     /region_name="GEWL"
                     /note="Goose egg-white lysozyme; cd01021"
                     /db_xref="CDD:381601"
     Site            order(73,95..97,100..101,119,123,147..148,150)
                     /site_type="other"
                     /note="sugar binding site [chemical binding]"
                     /db_xref="CDD:381601"
     CDS             1..185
                     /gene="LOC104056702"
                     /coded_by="XM_054053083.1:1157..1714"
                     /db_xref="GeneID:104056702"
ORIGIN      
        1 msgrygniln vdttgaseat arpeglsyag vaasekiaek dlrnmekyra kitrvgnskn
       61 idpaviagii sreshagtvl ddgwgdygna yglmqvdkry hkivgswdse ehlaqgteil
      121 rgmieeiqkk fprwtkeqql kggisaynag pnnvqtynem dvgtthndya ndvvaraklf
      181 kkngy
//
LOCUS       XP_053909073             157 aa            linear   VRT 09-MAR-2023
DEFINITION  39S ribosomal protein L30, mitochondrial [Cuculus canorus].
ACCESSION   XP_053909073
VERSION     XP_053909073.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053098.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..157
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..157
                     /product="39S ribosomal protein L30, mitochondrial"
                     /calculated_mol_wt=17826
     Region          63..116
                     /region_name="Ribosomal_L30"
                     /note="Ribosomal protein L30, which is found in eukaryotes
                     and prokaryotes but not in archaea, is one of the smallest
                     ribosomal proteins with a molecular mass of about 7kDa.
                     L30 binds the 23SrRNA as well as the 5S rRNA and is one of
                     five ribosomal proteins that...; cd01658"
                     /db_xref="CDD:100100"
     Site            order(69..70,72..73,75..77,80..81,84..86,88,91,96..97,
                     100..102,104..105)
                     /site_type="other"
                     /note="23S rRNA binding site [nucleotide binding]"
                     /db_xref="CDD:100100"
     CDS             1..157
                     /gene="MRPL30"
                     /coded_by="XM_054053098.1:67..540"
                     /db_xref="GeneID:104056703"
ORIGIN      
        1 maglarrgpa aawkmlqrme glastawarc lftrsripes vfqprpgdhe kyggdpeqph
       61 kihvvtriks vigrpywekk ivrdlglvka hqprlhknip svnsklkvik hliriqplkl
      121 pyglpteeem sdtyltskge liikrhlksg eqkeiks
//
LOCUS       XP_053909078             157 aa            linear   VRT 09-MAR-2023
DEFINITION  39S ribosomal protein L30, mitochondrial [Cuculus canorus].
ACCESSION   XP_053909078
VERSION     XP_053909078.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053103.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..157
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..157
                     /product="39S ribosomal protein L30, mitochondrial"
                     /calculated_mol_wt=17826
     Region          63..116
                     /region_name="Ribosomal_L30"
                     /note="Ribosomal protein L30, which is found in eukaryotes
                     and prokaryotes but not in archaea, is one of the smallest
                     ribosomal proteins with a molecular mass of about 7kDa.
                     L30 binds the 23SrRNA as well as the 5S rRNA and is one of
                     five ribosomal proteins that...; cd01658"
                     /db_xref="CDD:100100"
     Site            order(69..70,72..73,75..77,80..81,84..86,88,91,96..97,
                     100..102,104..105)
                     /site_type="other"
                     /note="23S rRNA binding site [nucleotide binding]"
                     /db_xref="CDD:100100"
     CDS             1..157
                     /gene="MRPL30"
                     /coded_by="XM_054053103.1:67..540"
                     /db_xref="GeneID:104056703"
ORIGIN      
        1 maglarrgpa aawkmlqrme glastawarc lftrsripes vfqprpgdhe kyggdpeqph
       61 kihvvtriks vigrpywekk ivrdlglvka hqprlhknip svnsklkvik hliriqplkl
      121 pyglpteeem sdtyltskge liikrhlksg eqkeiks
//
LOCUS       XP_053909079             157 aa            linear   VRT 09-MAR-2023
DEFINITION  39S ribosomal protein L30, mitochondrial [Cuculus canorus].
ACCESSION   XP_053909079
VERSION     XP_053909079.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053104.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..157
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..157
                     /product="39S ribosomal protein L30, mitochondrial"
                     /calculated_mol_wt=17826
     Region          63..116
                     /region_name="Ribosomal_L30"
                     /note="Ribosomal protein L30, which is found in eukaryotes
                     and prokaryotes but not in archaea, is one of the smallest
                     ribosomal proteins with a molecular mass of about 7kDa.
                     L30 binds the 23SrRNA as well as the 5S rRNA and is one of
                     five ribosomal proteins that...; cd01658"
                     /db_xref="CDD:100100"
     Site            order(69..70,72..73,75..77,80..81,84..86,88,91,96..97,
                     100..102,104..105)
                     /site_type="other"
                     /note="23S rRNA binding site [nucleotide binding]"
                     /db_xref="CDD:100100"
     CDS             1..157
                     /gene="MRPL30"
                     /coded_by="XM_054053104.1:67..540"
                     /db_xref="GeneID:104056703"
ORIGIN      
        1 maglarrgpa aawkmlqrme glastawarc lftrsripes vfqprpgdhe kyggdpeqph
       61 kihvvtriks vigrpywekk ivrdlglvka hqprlhknip svnsklkvik hliriqplkl
      121 pyglpteeem sdtyltskge liikrhlksg eqkeiks
//
LOCUS       XP_053909081             157 aa            linear   VRT 09-MAR-2023
DEFINITION  39S ribosomal protein L30, mitochondrial [Cuculus canorus].
ACCESSION   XP_053909081
VERSION     XP_053909081.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053106.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..157
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..157
                     /product="39S ribosomal protein L30, mitochondrial"
                     /calculated_mol_wt=17826
     Region          63..116
                     /region_name="Ribosomal_L30"
                     /note="Ribosomal protein L30, which is found in eukaryotes
                     and prokaryotes but not in archaea, is one of the smallest
                     ribosomal proteins with a molecular mass of about 7kDa.
                     L30 binds the 23SrRNA as well as the 5S rRNA and is one of
                     five ribosomal proteins that...; cd01658"
                     /db_xref="CDD:100100"
     Site            order(69..70,72..73,75..77,80..81,84..86,88,91,96..97,
                     100..102,104..105)
                     /site_type="other"
                     /note="23S rRNA binding site [nucleotide binding]"
                     /db_xref="CDD:100100"
     CDS             1..157
                     /gene="MRPL30"
                     /coded_by="XM_054053106.1:67..540"
                     /db_xref="GeneID:104056703"
ORIGIN      
        1 maglarrgpa aawkmlqrme glastawarc lftrsripes vfqprpgdhe kyggdpeqph
       61 kihvvtriks vigrpywekk ivrdlglvka hqprlhknip svnsklkvik hliriqplkl
      121 pyglpteeem sdtyltskge liikrhlksg eqkeiks
//
LOCUS       XP_053909092             323 aa            linear   VRT 09-MAR-2023
DEFINITION  magnesium transporter NIPA1 [Cuculus canorus].
ACCESSION   XP_053909092
VERSION     XP_053909092.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053117.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..323
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..323
                     /product="magnesium transporter NIPA1"
                     /calculated_mol_wt=34179
     Region          25..307
                     /region_name="EamA"
                     /note="EamA-like transporter family; cl23754"
                     /db_xref="CDD:474045"
     CDS             1..323
                     /gene="NIPA1"
                     /coded_by="XM_054053117.1:113..1084"
                     /db_xref="GeneID:104066350"
ORIGIN      
        1 mrmalgaaag egaaqspgpa avslglsvav vsslvngstf vlqkkgivra rgrgtsyltd
       61 ivwwsgtiam algqignfla ytavptvlvt plgalgvpfg silasyllke klnilgklgc
      121 llscagsvvl iihspksesv ttqaeleekl tnpvfvgylc ivllmlllli fwiapahgpt
      181 nimvyisics llgsftvpst kgiglaaqdi fhnnpssqra lylclvllav lgcsiiiqfr
      241 yinkalecfd ssvfgaiyyv vfttlvllas ailfrewsnv gvvdflgmac gfttvsigiv
      301 liqvfkefnf nigdlnkpnm ktd
//
LOCUS       XP_053909101             426 aa            linear   VRT 09-MAR-2023
DEFINITION  acrosin-like isoform X1 [Cuculus canorus].
ACCESSION   XP_053909101
VERSION     XP_053909101.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053126.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..426
                     /product="acrosin-like isoform X1"
                     /calculated_mol_wt=46761
     Region          169..357
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            order(306,333,335)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..426
                     /gene="LOC128850147"
                     /coded_by="XM_054053126.1:87..1367"
                     /db_xref="GeneID:128850147"
ORIGIN      
        1 msfwfpqvlr tpalgllwlw lsaccwgqrc parslamdcq radgsgdahl tcvwrvphpp
       61 evgadsspll rqhpvrrsre qgdpqnpgtg pacsitgdsq pgslqctqkk agvvplhprc
      121 lhlhsprgsg mlghrcptsf plslgkqear scwaapacas apshpslhlp srnvpawrvv
      181 agttsltdmg petqlryvrq iiihedydnt tqandialme lyepfrcgpy vqlacvpdfs
      241 lqlwqlrncy vsgwgvtmar sgglppalqe akvplidlqv cnssgwyrgd ihhhnlcagy
      301 pqggidtcqg dsggplvcqd lyadhfwlvg vtsfgagcar arrpgvytst rhfhdwiliq
      361 mmqrsvraat atqltwshvp ttsnpvetpq tmepshfssw iypfnklvdf lavvqellqv
      421 lksgnt
//
LOCUS       XP_053909111             238 aa            linear   VRT 09-MAR-2023
DEFINITION  acrosin-like isoform X2 [Cuculus canorus].
ACCESSION   XP_053909111
VERSION     XP_053909111.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053136.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..238
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..238
                     /product="acrosin-like isoform X2"
                     /calculated_mol_wt=26546
     Region          <2..169
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            order(118,145,147)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..238
                     /gene="LOC128850147"
                     /coded_by="XM_054053136.1:358..1074"
                     /db_xref="GeneID:128850147"
ORIGIN      
        1 mgpetqlryv rqiiihedyd nttqandial melyepfrcg pyvqlacvpd fslqlwqlrn
       61 cyvsgwgvtm arsgglppal qeakvplidl qvcnssgwyr gdihhhnlca gypqggidtc
      121 qgdsggplvc qdlyadhfwl vgvtsfgagc ararrpgvyt strhfhdwil iqmmqrsvra
      181 atatqltwsh vpttsnpvet pqtmepshfs swiypfnklv dflavvqell qvlksgnt
//
LOCUS       XP_053909122             347 aa            linear   VRT 09-MAR-2023
DEFINITION  acrosin-like [Cuculus canorus].
ACCESSION   XP_053909122
VERSION     XP_053909122.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053147.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..347
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..347
                     /product="acrosin-like"
                     /calculated_mol_wt=37672
     Region          43..276
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            order(85,134,231)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(225,252,254)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..347
                     /gene="LOC128850158"
                     /coded_by="XM_054053147.1:1373..2416"
                     /db_xref="GeneID:128850158"
ORIGIN      
        1 mnvlfvltll alfwpaqgsw dtcetcglrp sdyqnyssah aaggsdghpg awpwivsvqq
       61 ireagvvhic ggtlihpqwv ltaahcfvnt hnvlmwrvva gimhlahegp evqvrymkri
      121 lghkgysnit qandialiel depfqcspyv qlacvpdfsl rvqelktcyv sgwgatmags
      181 pgmppvlles qvhllnthac nssgwyrgai hphnlcagyp qggidtcqgd sggplvcqdp
      241 hanhswlvgv tswgrgcara rrpgvytstq yfrewivaqm gmdlagaats tesakthflt
      301 isnpgegtqp eptqravsst cpfhldklkg vfaqlqkvlk flrggkd
//
LOCUS       XP_053909134             229 aa            linear   VRT 09-MAR-2023
DEFINITION  rab-like protein 2A [Cuculus canorus].
ACCESSION   XP_053909134
VERSION     XP_053909134.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053159.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..229
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..229
                     /product="rab-like protein 2A"
                     /calculated_mol_wt=25628
     Region          28..188
                     /region_name="P-loop containing Nucleoside Triphosphate
                     Hydrolases"
                     /note="Members of the P-loop NTPase domain superfamily are
                     characterized by a conserved nucleotide phosphate-binding
                     motif, also referred to as the Walker A motif
                     (GxxxxGK[S/T], where x is any residue), and the Walker B
                     motif (hhhh[D/E], where h is a...; cl38936"
                     /db_xref="CDD:476819"
     Site            34..41
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206648"
     Site            order(36..42,85,139..140,142,166..168)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206648"
     Site            59
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206648"
     Site            63..65
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206648"
     Site            82..85
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206648"
     Site            order(84..85,101..102)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206648"
     Site            139..142
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206648"
     Site            166..168
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206648"
     CDS             1..229
                     /gene="LOC104059826"
                     /coded_by="XM_054053159.1:55..744"
                     /db_xref="GeneID:104059826"
ORIGIN      
        1 maaaeavgea aapdparnea aagaeetvki iclgdsavgk skllerflld afrpqplstf
       61 avtlyrhras vdgcpvevdf wdtagqerfq smhasyyhka hacimvfdvq rkvtyrnlnn
      121 wyqelrefrp aipclvaank idadmemtqk sfsfarkldl pfyfvsaadg tnvvkvfnda
      181 iklaveykqn sgdfidevmr elesfdlqek redlsekeks cpeqkppsa
//
LOCUS       XP_053909135             191 aa            linear   VRT 09-MAR-2023
DEFINITION  C-type lectin APL-like [Cuculus canorus].
ACCESSION   XP_053909135
VERSION     XP_053909135.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053160.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..191
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..191
                     /product="C-type lectin APL-like"
                     /calculated_mol_wt=21792
     Region          61..189
                     /region_name="CLECT"
                     /note="C-type lectin (CTL)/C-type lectin-like (CTLD)
                     domain; cl02432"
                     /db_xref="CDD:470576"
     Site            order(160,164,166,173,175..178,181..183)
                     /site_type="other"
                     /note="ligand binding surface [chemical binding]"
                     /db_xref="CDD:153064"
     CDS             1..191
                     /gene="LOC128850170"
                     /coded_by="XM_054053160.1:296..871"
                     /db_xref="GeneID:128850170"
ORIGIN      
        1 mgagptrqrl lgcllllafl gvdslpadri leeragtsil aaapdvqpyv lqeppvrahi
       61 cphnwihfrg hcygyftqrk tqaeaqeecn rygptgtlas ihtegssvvl geyvasqqdr
      121 anvwiglkde ehtgtwrwsd ssvldylhwd wgqpvqwrnw ycvvlgqnsa fqywrnyscq
      181 eqfpflcqyq v
//
LOCUS       XP_053909141             191 aa            linear   VRT 09-MAR-2023
DEFINITION  C-type lectin APL-like [Cuculus canorus].
ACCESSION   XP_053909141
VERSION     XP_053909141.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053166.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..191
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..191
                     /product="C-type lectin APL-like"
                     /calculated_mol_wt=21807
     Region          61..189
                     /region_name="CLECT"
                     /note="C-type lectin (CTL)/C-type lectin-like (CTLD)
                     domain; cl02432"
                     /db_xref="CDD:470576"
     Site            order(160,164,166,173,175..178,181..183)
                     /site_type="other"
                     /note="ligand binding surface [chemical binding]"
                     /db_xref="CDD:153064"
     CDS             1..191
                     /gene="LOC128850177"
                     /coded_by="XM_054053166.1:139..714"
                     /db_xref="GeneID:128850177"
ORIGIN      
        1 mgavptrqrl lgcllllafl gvdslpadri leeragtsil aaapdvqpyv lqeppvrahi
       61 cphnwihfrg hcygyftqrk tqaeaqeecs rygptgtlas ihtegssvvl geyvasqqdr
      121 anvwiglkde ehtgtwrwsd ssvldylhwd wgqpvqwrnw ycvvlgqnsa fqywrnyscq
      181 eqfpflcqyq v
//
LOCUS       XP_053909151             191 aa            linear   VRT 09-MAR-2023
DEFINITION  C-type lectin APL-like [Cuculus canorus].
ACCESSION   XP_053909151
VERSION     XP_053909151.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053176.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..191
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..191
                     /product="C-type lectin APL-like"
                     /calculated_mol_wt=21834
     Region          61..189
                     /region_name="CLECT"
                     /note="C-type lectin (CTL)/C-type lectin-like (CTLD)
                     domain; cl02432"
                     /db_xref="CDD:470576"
     Site            order(160,164,166,173,175..178,181..183)
                     /site_type="other"
                     /note="ligand binding surface [chemical binding]"
                     /db_xref="CDD:153064"
     CDS             1..191
                     /gene="LOC128850185"
                     /coded_by="XM_054053176.1:237..812"
                     /db_xref="GeneID:128850185"
ORIGIN      
        1 mgavptrqrl lgcllllafl gvdslpadri leeragtsil aaapdvqpyv lqeppvrahi
       61 cphnwihfrg hcygyftqrk tqaeaqeecn rygptgtlas ihtegssvvl geyvasqqdr
      121 anvwiglkde ehtgtwrwsd ssvldylhwd wgqpvqwrnw ycvvlgqnsa fqywrnyscq
      181 eqfpflcqyq v
//
LOCUS       XP_009567108             382 aa            linear   VRT 09-MAR-2023
DEFINITION  phytanoyl-CoA dioxygenase, peroxisomal [Cuculus canorus].
ACCESSION   XP_009567108
VERSION     XP_009567108.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568813.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567108.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..382
                     /product="phytanoyl-CoA dioxygenase, peroxisomal"
                     /calculated_mol_wt=43795
     Region          99..334
                     /region_name="PhyH"
                     /note="Ectoine hydroxylase-related dioxygenase,
                     phytanoyl-CoA dioxygenase (PhyH) family [Secondary
                     metabolites biosynthesis, transport and catabolism];
                     COG5285"
                     /db_xref="CDD:444095"
     CDS             1..382
                     /gene="PHYH"
                     /coded_by="XM_009568813.2:16..1164"
                     /db_xref="GeneID:104066233"
ORIGIN      
        1 mhgcwrmcse akaadanral ilpscgyrir leseysacpg vmeqlgkqsg paarldtilr
       61 hlsprlgasp aptsfptsaq isavpqpakf rytldndvlt teqrqfyedn gyllikklvs
      121 dedierfrke fvrickkevk ppgamimkne slrsqygqse kvvnkvqdfq edkelfryct
      181 lpevlryvec ftgpnimamh tmlinklpds dkqtflhpmh qdlhyfpfrp adrivcswta
      241 meradqdngc livqpgthne tlkphsypkw egktnklfhg lldenekspr vhlvmekgdt
      301 vffhpllihg sginktsgfr ksischfass ecyyidvknt tqedlekelv emvhkkyntt
      361 svelrdiwsf rarlvqgeri nl
//
LOCUS       XP_053909163             266 aa            linear   VRT 09-MAR-2023
DEFINITION  homeobox protein CDX-2 [Cuculus canorus].
ACCESSION   XP_053909163
VERSION     XP_053909163.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053188.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..266
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..266
                     /product="homeobox protein CDX-2"
                     /calculated_mol_wt=28445
     Region          13..157
                     /region_name="Caudal_act"
                     /note="Caudal like protein activation region; pfam04731"
                     /db_xref="CDD:461413"
     Region          170..225
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     CDS             1..266
                     /gene="CDX2"
                     /coded_by="XM_054053188.1:1..801"
                     /db_xref="GeneID:128850202"
ORIGIN      
        1 myvsyllekd gpmypgpvrh sgglnlaaqn fvgapqygdy ggyhvnldsa qspgpawpap
       61 yaaplrdewg aygqgapppa aavhglnggs paaamayssa eyhhhhphah hhagpaphcs
      121 agvmqplgap anaapeplsp agqrrglcew mrkptqtpls sqvktrtkdk yrvvytdhqr
      181 lelekefhys ryitirrkae lasnlglser qvkiwfqnrr akerkinkkk lqqaqpggae
      241 plspgaslqg paggaaaagl vptapq
//
LOCUS       XP_053909168             431 aa            linear   VRT 09-MAR-2023
DEFINITION  sialidase-3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053909168
VERSION     XP_053909168.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053193.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..431
                     /product="sialidase-3 isoform X1"
                     /calculated_mol_wt=46992
     Region          56..417
                     /region_name="Sialidase_non-viral"
                     /note="Non-viral sialidases; cd15482"
                     /db_xref="CDD:271234"
     Region          67..119
                     /region_name="Sialidase propeller 1"
                     /note="Sialidase propeller 1 [structural motif]"
                     /db_xref="CDD:271234"
     Site            order(68,93,269,290,355,385,401)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:271234"
     Region          129..187
                     /region_name="Sialidase propeller 2"
                     /note="Sialidase propeller 2 [structural motif]"
                     /db_xref="CDD:271234"
     Region          201..261
                     /region_name="Sialidase propeller 3"
                     /note="Sialidase propeller 3 [structural motif]"
                     /db_xref="CDD:271234"
     Region          269..313
                     /region_name="Sialidase propeller 4"
                     /note="Sialidase propeller 4 [structural motif]"
                     /db_xref="CDD:271234"
     Region          323..378
                     /region_name="Sialidase propeller 5"
                     /note="Sialidase propeller 5 [structural motif]"
                     /db_xref="CDD:271234"
     Region          384..417
                     /region_name="Sialidase propeller 6"
                     /note="Sialidase propeller 6 [structural motif]"
                     /db_xref="CDD:271234"
     CDS             1..431
                     /gene="NEU3"
                     /coded_by="XM_054053193.1:3..1298"
                     /db_xref="GeneID:104064205"
ORIGIN      
        1 mergervwng gagpsrdlee atmsqpitcl kqqgvgresp clpspptgsp liflqetlfq
       61 qksgvtyrip allyipptat llafaekrss akdedakylv lrrgcccgss vewgpmeels
      121 tlvlphrrtm npcplydats gtiflfcicv ergktercqi lrgcsaarlc fatstnsgrs
      181 wtplqdvtne aigtdlsrwa tfavgpghgv qldsgrlvvp aytyymhkcl cglvplpcyt
      241 rqhalvfysd dsgrswhkgd lvggeqtgec qvaeingsna hqpvlycnar alrgcrveaf
      301 stdrglgfeh seqskvlgep prgcqgsvvs ftppastrda etwllyshpt drhhrrdlgi
      361 ylnpspldva gwqhpwvlhp gpagysdlav cpdgifgclf ecgttsacee ivfclftlkt
      421 sdcgeenpka s
//
LOCUS       XP_053909171             430 aa            linear   VRT 09-MAR-2023
DEFINITION  sialidase-3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053909171
VERSION     XP_053909171.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053196.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..430
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..430
                     /product="sialidase-3 isoform X2"
                     /calculated_mol_wt=46863
     Region          55..416
                     /region_name="Sialidase_non-viral"
                     /note="Non-viral sialidases; cd15482"
                     /db_xref="CDD:271234"
     Region          66..118
                     /region_name="Sialidase propeller 1"
                     /note="Sialidase propeller 1 [structural motif]"
                     /db_xref="CDD:271234"
     Site            order(67,92,268,289,354,384,400)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:271234"
     Region          128..186
                     /region_name="Sialidase propeller 2"
                     /note="Sialidase propeller 2 [structural motif]"
                     /db_xref="CDD:271234"
     Region          200..260
                     /region_name="Sialidase propeller 3"
                     /note="Sialidase propeller 3 [structural motif]"
                     /db_xref="CDD:271234"
     Region          268..312
                     /region_name="Sialidase propeller 4"
                     /note="Sialidase propeller 4 [structural motif]"
                     /db_xref="CDD:271234"
     Region          322..377
                     /region_name="Sialidase propeller 5"
                     /note="Sialidase propeller 5 [structural motif]"
                     /db_xref="CDD:271234"
     Region          383..416
                     /region_name="Sialidase propeller 6"
                     /note="Sialidase propeller 6 [structural motif]"
                     /db_xref="CDD:271234"
     CDS             1..430
                     /gene="NEU3"
                     /coded_by="XM_054053196.1:59..1351"
                     /db_xref="GeneID:104064205"
ORIGIN      
        1 mergervwng gagpsrdlee atmsqpitcl kqgvgrespc lpspptgspl iflqetlfqq
       61 ksgvtyripa llyipptatl lafaekrssa kdedakylvl rrgcccgssv ewgpmeelst
      121 lvlphrrtmn pcplydatsg tiflfcicve rgktercqil rgcsaarlcf atstnsgrsw
      181 tplqdvtnea igtdlsrwat favgpghgvq ldsgrlvvpa ytyymhkclc glvplpcytr
      241 qhalvfysdd sgrswhkgdl vggeqtgecq vaeingsnah qpvlycnara lrgcrveafs
      301 tdrglgfehs eqskvlgepp rgcqgsvvsf tppastrdae twllyshptd rhhrrdlgiy
      361 lnpspldvag wqhpwvlhpg pagysdlavc pdgifgclfe cgttsaceei vfclftlkts
      421 dcgeenpkas
//
LOCUS       XP_053909176             430 aa            linear   VRT 09-MAR-2023
DEFINITION  sialidase-3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053909176
VERSION     XP_053909176.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053201.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..430
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..430
                     /product="sialidase-3 isoform X3"
                     /calculated_mol_wt=46936
     Region          55..416
                     /region_name="Sialidase_non-viral"
                     /note="Non-viral sialidases; cd15482"
                     /db_xref="CDD:271234"
     Region          66..118
                     /region_name="Sialidase propeller 1"
                     /note="Sialidase propeller 1 [structural motif]"
                     /db_xref="CDD:271234"
     Site            order(67,92,268,289,354,384,400)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:271234"
     Region          128..186
                     /region_name="Sialidase propeller 2"
                     /note="Sialidase propeller 2 [structural motif]"
                     /db_xref="CDD:271234"
     Region          200..260
                     /region_name="Sialidase propeller 3"
                     /note="Sialidase propeller 3 [structural motif]"
                     /db_xref="CDD:271234"
     Region          268..312
                     /region_name="Sialidase propeller 4"
                     /note="Sialidase propeller 4 [structural motif]"
                     /db_xref="CDD:271234"
     Region          322..377
                     /region_name="Sialidase propeller 5"
                     /note="Sialidase propeller 5 [structural motif]"
                     /db_xref="CDD:271234"
     Region          383..416
                     /region_name="Sialidase propeller 6"
                     /note="Sialidase propeller 6 [structural motif]"
                     /db_xref="CDD:271234"
     CDS             1..430
                     /gene="NEU3"
                     /coded_by="XM_054053201.1:11..1303"
                     /db_xref="GeneID:104064205"
ORIGIN      
        1 mergervwrg sagpsrdlee atmsqpitcl kqgvgrespc lpspptgspl iflqetlfqq
       61 ksgvtyripa llyipptatl lafaekrssa kdedakylvl rrgcccgssv ewgpmeelst
      121 lvlphrrtmn pcplydatsg tiflfcicve rgktercqil rgcsaarlcf atstnsgrsw
      181 tplqdvtnea igtdlsrwat favgpghgvq ldsgrlvvpa ytyymhkclc glvplpcytr
      241 qhalvfysdd sgrswhkgdl vggeqtgecq vaeingsnah qpvlycnara lrgcrveafs
      301 tdrglgfehs eqskvlgepp rgcqgsvvsf tppastrdae twllyshptd rhhrrdlgiy
      361 lnpspldvag wqhpwvlhpg pagysdlavc pdgifgclfe cgttsaceei vfclftlkts
      421 dcgeenpkas
//
LOCUS       XP_053909184             408 aa            linear   VRT 09-MAR-2023
DEFINITION  sialidase-3 isoform X4 [Cuculus canorus].
ACCESSION   XP_053909184
VERSION     XP_053909184.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053209.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..408
                     /product="sialidase-3 isoform X4"
                     /calculated_mol_wt=44464
     Region          33..394
                     /region_name="Sialidase_non-viral"
                     /note="Non-viral sialidases; cd15482"
                     /db_xref="CDD:271234"
     Region          44..96
                     /region_name="Sialidase propeller 1"
                     /note="Sialidase propeller 1 [structural motif]"
                     /db_xref="CDD:271234"
     Site            order(45,70,246,267,332,362,378)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:271234"
     Region          106..164
                     /region_name="Sialidase propeller 2"
                     /note="Sialidase propeller 2 [structural motif]"
                     /db_xref="CDD:271234"
     Region          178..238
                     /region_name="Sialidase propeller 3"
                     /note="Sialidase propeller 3 [structural motif]"
                     /db_xref="CDD:271234"
     Region          246..290
                     /region_name="Sialidase propeller 4"
                     /note="Sialidase propeller 4 [structural motif]"
                     /db_xref="CDD:271234"
     Region          300..355
                     /region_name="Sialidase propeller 5"
                     /note="Sialidase propeller 5 [structural motif]"
                     /db_xref="CDD:271234"
     Region          361..394
                     /region_name="Sialidase propeller 6"
                     /note="Sialidase propeller 6 [structural motif]"
                     /db_xref="CDD:271234"
     CDS             1..408
                     /gene="NEU3"
                     /coded_by="XM_054053209.1:56..1282"
                     /db_xref="GeneID:104064205"
ORIGIN      
        1 msqpitclkq gvgrespclp spptgsplif lqetlfqqks gvtyripall yipptatlla
       61 faekrssakd edakylvlrr gcccgssvew gpmeelstlv lphrrtmnpc plydatsgti
      121 flfcicverg ktercqilrg csaarlcfat stnsgrswtp lqdvtneaig tdlsrwatfa
      181 vgpghgvqld sgrlvvpayt yymhkclcgl vplpcytrqh alvfysddsg rswhkgdlvg
      241 geqtgecqva eingsnahqp vlycnaralr gcrveafstd rglgfehseq skvlgepprg
      301 cqgsvvsftp pastrdaetw llyshptdrh hrrdlgiyln pspldvagwq hpwvlhpgpa
      361 gysdlavcpd gifgclfecg ttsaceeivf clftlktsdc geenpkas
//
LOCUS       XP_053909188             408 aa            linear   VRT 09-MAR-2023
DEFINITION  sialidase-3 isoform X4 [Cuculus canorus].
ACCESSION   XP_053909188
VERSION     XP_053909188.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053213.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..408
                     /product="sialidase-3 isoform X4"
                     /calculated_mol_wt=44464
     Region          33..394
                     /region_name="Sialidase_non-viral"
                     /note="Non-viral sialidases; cd15482"
                     /db_xref="CDD:271234"
     Region          44..96
                     /region_name="Sialidase propeller 1"
                     /note="Sialidase propeller 1 [structural motif]"
                     /db_xref="CDD:271234"
     Site            order(45,70,246,267,332,362,378)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:271234"
     Region          106..164
                     /region_name="Sialidase propeller 2"
                     /note="Sialidase propeller 2 [structural motif]"
                     /db_xref="CDD:271234"
     Region          178..238
                     /region_name="Sialidase propeller 3"
                     /note="Sialidase propeller 3 [structural motif]"
                     /db_xref="CDD:271234"
     Region          246..290
                     /region_name="Sialidase propeller 4"
                     /note="Sialidase propeller 4 [structural motif]"
                     /db_xref="CDD:271234"
     Region          300..355
                     /region_name="Sialidase propeller 5"
                     /note="Sialidase propeller 5 [structural motif]"
                     /db_xref="CDD:271234"
     Region          361..394
                     /region_name="Sialidase propeller 6"
                     /note="Sialidase propeller 6 [structural motif]"
                     /db_xref="CDD:271234"
     CDS             1..408
                     /gene="NEU3"
                     /coded_by="XM_054053213.1:63..1289"
                     /db_xref="GeneID:104064205"
ORIGIN      
        1 msqpitclkq gvgrespclp spptgsplif lqetlfqqks gvtyripall yipptatlla
       61 faekrssakd edakylvlrr gcccgssvew gpmeelstlv lphrrtmnpc plydatsgti
      121 flfcicverg ktercqilrg csaarlcfat stnsgrswtp lqdvtneaig tdlsrwatfa
      181 vgpghgvqld sgrlvvpayt yymhkclcgl vplpcytrqh alvfysddsg rswhkgdlvg
      241 geqtgecqva eingsnahqp vlycnaralr gcrveafstd rglgfehseq skvlgepprg
      301 cqgsvvsftp pastrdaetw llyshptdrh hrrdlgiyln pspldvagwq hpwvlhpgpa
      361 gysdlavcpd gifgclfecg ttsaceeivf clftlktsdc geenpkas
//
LOCUS       XP_053909191             408 aa            linear   VRT 09-MAR-2023
DEFINITION  sialidase-3 isoform X4 [Cuculus canorus].
ACCESSION   XP_053909191
VERSION     XP_053909191.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053216.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..408
                     /product="sialidase-3 isoform X4"
                     /calculated_mol_wt=44464
     Region          33..394
                     /region_name="Sialidase_non-viral"
                     /note="Non-viral sialidases; cd15482"
                     /db_xref="CDD:271234"
     Region          44..96
                     /region_name="Sialidase propeller 1"
                     /note="Sialidase propeller 1 [structural motif]"
                     /db_xref="CDD:271234"
     Site            order(45,70,246,267,332,362,378)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:271234"
     Region          106..164
                     /region_name="Sialidase propeller 2"
                     /note="Sialidase propeller 2 [structural motif]"
                     /db_xref="CDD:271234"
     Region          178..238
                     /region_name="Sialidase propeller 3"
                     /note="Sialidase propeller 3 [structural motif]"
                     /db_xref="CDD:271234"
     Region          246..290
                     /region_name="Sialidase propeller 4"
                     /note="Sialidase propeller 4 [structural motif]"
                     /db_xref="CDD:271234"
     Region          300..355
                     /region_name="Sialidase propeller 5"
                     /note="Sialidase propeller 5 [structural motif]"
                     /db_xref="CDD:271234"
     Region          361..394
                     /region_name="Sialidase propeller 6"
                     /note="Sialidase propeller 6 [structural motif]"
                     /db_xref="CDD:271234"
     CDS             1..408
                     /gene="NEU3"
                     /coded_by="XM_054053216.1:48..1274"
                     /db_xref="GeneID:104064205"
ORIGIN      
        1 msqpitclkq gvgrespclp spptgsplif lqetlfqqks gvtyripall yipptatlla
       61 faekrssakd edakylvlrr gcccgssvew gpmeelstlv lphrrtmnpc plydatsgti
      121 flfcicverg ktercqilrg csaarlcfat stnsgrswtp lqdvtneaig tdlsrwatfa
      181 vgpghgvqld sgrlvvpayt yymhkclcgl vplpcytrqh alvfysddsg rswhkgdlvg
      241 geqtgecqva eingsnahqp vlycnaralr gcrveafstd rglgfehseq skvlgepprg
      301 cqgsvvsftp pastrdaetw llyshptdrh hrrdlgiyln pspldvagwq hpwvlhpgpa
      361 gysdlavcpd gifgclfecg ttsaceeivf clftlktsdc geenpkas
//
LOCUS       XP_053909196             408 aa            linear   VRT 09-MAR-2023
DEFINITION  sialidase-3 isoform X4 [Cuculus canorus].
ACCESSION   XP_053909196
VERSION     XP_053909196.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053221.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..408
                     /product="sialidase-3 isoform X4"
                     /calculated_mol_wt=44464
     Region          33..394
                     /region_name="Sialidase_non-viral"
                     /note="Non-viral sialidases; cd15482"
                     /db_xref="CDD:271234"
     Region          44..96
                     /region_name="Sialidase propeller 1"
                     /note="Sialidase propeller 1 [structural motif]"
                     /db_xref="CDD:271234"
     Site            order(45,70,246,267,332,362,378)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:271234"
     Region          106..164
                     /region_name="Sialidase propeller 2"
                     /note="Sialidase propeller 2 [structural motif]"
                     /db_xref="CDD:271234"
     Region          178..238
                     /region_name="Sialidase propeller 3"
                     /note="Sialidase propeller 3 [structural motif]"
                     /db_xref="CDD:271234"
     Region          246..290
                     /region_name="Sialidase propeller 4"
                     /note="Sialidase propeller 4 [structural motif]"
                     /db_xref="CDD:271234"
     Region          300..355
                     /region_name="Sialidase propeller 5"
                     /note="Sialidase propeller 5 [structural motif]"
                     /db_xref="CDD:271234"
     Region          361..394
                     /region_name="Sialidase propeller 6"
                     /note="Sialidase propeller 6 [structural motif]"
                     /db_xref="CDD:271234"
     CDS             1..408
                     /gene="NEU3"
                     /coded_by="XM_054053221.1:38..1264"
                     /db_xref="GeneID:104064205"
ORIGIN      
        1 msqpitclkq gvgrespclp spptgsplif lqetlfqqks gvtyripall yipptatlla
       61 faekrssakd edakylvlrr gcccgssvew gpmeelstlv lphrrtmnpc plydatsgti
      121 flfcicverg ktercqilrg csaarlcfat stnsgrswtp lqdvtneaig tdlsrwatfa
      181 vgpghgvqld sgrlvvpayt yymhkclcgl vplpcytrqh alvfysddsg rswhkgdlvg
      241 geqtgecqva eingsnahqp vlycnaralr gcrveafstd rglgfehseq skvlgepprg
      301 cqgsvvsftp pastrdaetw llyshptdrh hrrdlgiyln pspldvagwq hpwvlhpgpa
      361 gysdlavcpd gifgclfecg ttsaceeivf clftlktsdc geenpkas
//
LOCUS       XP_053909198             201 aa            linear   VRT 09-MAR-2023
DEFINITION  signal peptidase complex subunit 2 [Cuculus canorus].
ACCESSION   XP_053909198
VERSION     XP_053909198.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053223.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..201
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..201
                     /product="signal peptidase complex subunit 2"
                     /calculated_mol_wt=22950
     Region          36..192
                     /region_name="SPC25"
                     /note="Microsomal signal peptidase 25 kDa subunit (SPC25);
                     pfam06703"
                     /db_xref="CDD:461993"
     CDS             1..201
                     /gene="SPCS2"
                     /coded_by="XM_054053223.1:39..644"
                     /db_xref="GeneID:104064107"
ORIGIN      
        1 maarggrsgl ldkwkiddkp vkidkwdgsa vknslddsak kvllekykyv enfrlidgrl
       61 iictisclfa ivaliwdylh pfpeskpvla fcvvsyfvmm giltmytsyk eksiflvahr
      121 kdpagmdpdd vwqlssslkr fddkytlklt fisgrtkqqr eaeftksiak ffdnngtlvm
      181 eayepevskl hdslalerkt k
//
LOCUS       XP_009554562             609 aa            linear   VRT 09-MAR-2023
DEFINITION  leukotriene A-4 hydrolase [Cuculus canorus].
ACCESSION   XP_009554562
VERSION     XP_009554562.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556267.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..609
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..609
                     /product="leukotriene A-4 hydrolase"
                     /calculated_mol_wt=69299
     Region          4..605
                     /region_name="leuko_A4_hydro"
                     /note="leukotriene A-4 hydrolase/aminopeptidase;
                     TIGR02411"
                     /db_xref="CDD:274120"
     CDS             1..609
                     /gene="LTA4H"
                     /coded_by="XM_009556267.2:62..1891"
                     /db_xref="GeneID:104055173"
ORIGIN      
        1 maadpcsfas paccltrhly lrcradfaaq tlrgsaaftv raerealrcv vldtkdvqvf
       61 kvtvngqdak fgfgekhsfk gtpleitlpf elrrgqeail eisfesspks salqwftpeq
      121 tsgkkypflf sqcqaihcra ifpcqdtpav kltyyaevsv pkelvalmsa nregempdpe
      181 dssrkiyhfs qnvpipcyli aivvgalesr kigprslvwa ekelvdksay efaeteamlk
      241 taedlagpyv wgqydllvlp psfpyggmen pcltfvtptl lagdrslsnv iaheishswt
      301 gnlvtnktwe hfwlneghtv ylerriggrl fgeqfrhfka lggwrelqnt idtfgdknpv
      361 tnlvlnlsev dpdeayssvp yekgfallfy leqllggpdv fmgflkayiq qfayksmvte
      421 dwkkflysyf kdkvdlldkv dwnswfnapg mppvkptydm tltnacvals qrwiqakesd
      481 lcsfssadlk emsshqlief lalllleppf plshvkrmqq vydfnainns eirfrwlrlc
      541 lkskweeaip lalkmatdqg rmkftrplfr dlynfdksrd lavktflehr asmhpvtsml
      601 vgkdlkqde
//
LOCUS       XP_053909206             568 aa            linear   VRT 09-MAR-2023
DEFINITION  thioredoxin reductase 1, cytoplasmic isoform X1 [Cuculus canorus].
ACCESSION   XP_053909206
VERSION     XP_053909206.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053231.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..568
                     /product="thioredoxin reductase 1, cytoplasmic isoform X1"
                     /calculated_mol_wt=62368
     Region          82..568
                     /region_name="TGR"
                     /note="thioredoxin and glutathione reductase
                     selenoprotein; TIGR01438"
                     /db_xref="CDD:273624"
     CDS             1..568
                     /gene="TXNRD1"
                     /coded_by="XM_054053231.1:7..1713"
                     /db_xref="GeneID:104060214"
ORIGIN      
        1 mgsalrkska vrqapgsgrr hpaegtqkvq egqheetaet sqpvgfvrke qiddektlkt
       61 hkegkpqkll emnentpvph synydlivig ggsgglaaak eaakyekkvm vldfvmptpl
      121 gnswglggtc vnvgcipkkl mhqaallgqa lqdsrkfgwq faeevkhnwm tmtesiqnyi
      181 gslnwgyrva lrekkvtyen aygefvgpht ikatnkrgve klytaerfli atgerprylg
      241 ipgdkeycls sddlfslpyc pgktlvigas yvalecagfl aglgldvtvm vrsillrgfd
      301 qdiankigey meehgisfir efvpikveqi eegtpgrlkv takstkgnqi iageyntvll
      361 aigrdactrs igldkvgvki nektgkipvn deeqtnvpyi yaigdilqdk leltpvaiqa
      421 grllvqrlya gatrkcdyvn vpttvftple ygacgyseea avekfgeeni evyhshfwpl
      481 ewtvpsrdnn kcyakiicni qdnervigfh vlgpnagevt qgfaaamkcg ltkeqldsti
      541 gihpvcaeif ttlsvtkrsg entllsgc
//
LOCUS       XP_009560275             497 aa            linear   VRT 09-MAR-2023
DEFINITION  thioredoxin reductase 1, cytoplasmic isoform X2 [Cuculus canorus].
ACCESSION   XP_009560275
VERSION     XP_009560275.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009561980.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009560275.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..497
                     /product="thioredoxin reductase 1, cytoplasmic isoform X2"
                     /calculated_mol_wt=54495
     Region          11..497
                     /region_name="TGR"
                     /note="thioredoxin and glutathione reductase
                     selenoprotein; TIGR01438"
                     /db_xref="CDD:273624"
     CDS             1..497
                     /gene="TXNRD1"
                     /coded_by="XM_009561980.2:163..1656"
                     /db_xref="GeneID:104060214"
ORIGIN      
        1 mnentpvphs ynydlivigg gsgglaaake aakyekkvmv ldfvmptplg nswglggtcv
       61 nvgcipkklm hqaallgqal qdsrkfgwqf aeevkhnwmt mtesiqnyig slnwgyrval
      121 rekkvtyena ygefvgphti katnkrgvek lytaerflia tgerprylgi pgdkeyclss
      181 ddlfslpycp gktlvigasy valecagfla glgldvtvmv rsillrgfdq diankigeym
      241 eehgisfire fvpikveqie egtpgrlkvt akstkgnqii ageyntvlla igrdactrsi
      301 gldkvgvkin ektgkipvnd eeqtnvpyiy aigdilqdkl eltpvaiqag rllvqrlyag
      361 atrkcdyvnv pttvftpley gacgyseeaa vekfgeenie vyhshfwple wtvpsrdnnk
      421 cyakiicniq dnervigfhv lgpnagevtq gfaaamkcgl tkeqldstig ihpvcaeift
      481 tlsvtkrsge ntllsgc
//
LOCUS       XP_053909221             640 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear receptor subfamily 2 group C member 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053909221
VERSION     XP_053909221.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053246.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..640
                     /product="nuclear receptor subfamily 2 group C member 1
                     isoform X1"
                     /calculated_mol_wt=70309
     Region          145..231
                     /region_name="NR_DBD_TR2_like"
                     /note="DNA-binding domain of the TR2 and TR4 (human
                     testicular receptor 2 and 4) is composed of two C4-type
                     zinc fingers; cd06967"
                     /db_xref="CDD:143525"
     Site            order(150,153,167,170,186,192,202,205)
                     /site_type="other"
                     /note="zinc binding site [ion binding]"
                     /db_xref="CDD:143525"
     Site            order(160..162,168..169,171,173,176,179,199..200,203,206,
                     217,220)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143525"
     Region          405..626
                     /region_name="NR_LBD_TR2_like"
                     /note="The ligand binding domain of the orphan nuclear
                     receptors TR4 and TR2; cd06952"
                     /db_xref="CDD:132750"
     Site            order(429..430,434,468,472,475,489,516)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:132750"
     Site            order(439,442,446,451,456..457,459..460,463..464)
                     /site_type="active"
                     /note="putative coactivator recognition site [active]"
                     /db_xref="CDD:132750"
     CDS             1..640
                     /gene="NR2C1"
                     /coded_by="XM_054053246.1:129..2051"
                     /db_xref="GeneID:104055188"
ORIGIN      
        1 matieelahq iieqqvgeis hsqgavtqtl mdgtaqriqi vpadsglslp qriqivtdqq
       61 tgqkiqivta ldqssagkqf iltnhdgstp skvilarqds tpgkvilatp daagvnqlff
      121 aspdisaqhi qiltdnspne qslnkvfdlc vvcgdkasgr hygavtcegc kgffkrsirk
      181 nlvyscrgtk dcvinkhhrn rcqycrlqrc iafgmkqdsv qcerkpievs rekssncaas
      241 tekiyirkdl rsplaatptf vtdnetarst gllesgmfvn ihqsavksep tvlmtpdkve
      301 acqgdlstla nvvtslasls kckdisqsst elsmieslsn geaslselqq eeqassdvtr
      361 afdtlakaln pgesatcqns dsieagvqlm ggeasmnive iegpllsdah iafrltmpsp
      421 mpeylnvhyi cesasrllfl smhwarsips fqalgqdnsi slvkacwnel ftlglaqcsq
      481 vmnvatilta fvnhlhgslq qdklptdrgk lvmehifklq efcnsmvklc ldgyeyaylk
      541 aivlfspdhp glenvvqiek fqekaymefq dyvtkaypdd tyrlsrlllr lpalrlmsaa
      601 iteelffagl ignvqidsii pyilrmetad ynsqiighav
//
LOCUS       XP_053909228             624 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear receptor subfamily 2 group C member 1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053909228
VERSION     XP_053909228.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053253.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..624
                     /product="nuclear receptor subfamily 2 group C member 1
                     isoform X2"
                     /calculated_mol_wt=68532
     Region          129..215
                     /region_name="NR_DBD_TR2_like"
                     /note="DNA-binding domain of the TR2 and TR4 (human
                     testicular receptor 2 and 4) is composed of two C4-type
                     zinc fingers; cd06967"
                     /db_xref="CDD:143525"
     Site            order(134,137,151,154,170,176,186,189)
                     /site_type="other"
                     /note="zinc binding site [ion binding]"
                     /db_xref="CDD:143525"
     Site            order(144..146,152..153,155,157,160,163,183..184,187,190,
                     201,204)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143525"
     Region          389..610
                     /region_name="NR_LBD_TR2_like"
                     /note="The ligand binding domain of the orphan nuclear
                     receptors TR4 and TR2; cd06952"
                     /db_xref="CDD:132750"
     Site            order(413..414,418,452,456,459,473,500)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:132750"
     Site            order(423,426,430,435,440..441,443..444,447..448)
                     /site_type="active"
                     /note="putative coactivator recognition site [active]"
                     /db_xref="CDD:132750"
     CDS             1..624
                     /gene="NR2C1"
                     /coded_by="XM_054053253.1:138..2012"
                     /db_xref="GeneID:104055188"
ORIGIN      
        1 mlishsqgav tqtlmdgtaq riqivpadsg lslpqriqiv tdqqtgqkiq ivtaldqssa
       61 gkqfiltnhd gstpskvila rqdstpgkvi latpdaagvn qlffaspdis aqhiqiltdn
      121 spneqslnkv fdlcvvcgdk asgrhygavt cegckgffkr sirknlvysc rgtkdcvink
      181 hhrnrcqycr lqrciafgmk qdsvqcerkp ievsrekssn caastekiyi rkdlrsplaa
      241 tptfvtdnet arstgllesg mfvnihqsav kseptvlmtp dkveacqgdl stlanvvtsl
      301 aslskckdis qsstelsmie slsngeasls elqqeeqass dvtrafdtla kalnpgesat
      361 cqnsdsieag vqlmggeasm niveiegpll sdahiafrlt mpspmpeyln vhyicesasr
      421 llflsmhwar sipsfqalgq dnsislvkac wnelftlgla qcsqvmnvat iltafvnhlh
      481 gslqqdklpt drgklvmehi fklqefcnsm vklcldgyey aylkaivlfs pdhpglenvv
      541 qiekfqekay mefqdyvtka ypddtyrlsr lllrlpalrl msaaiteelf faglignvqi
      601 dsiipyilrm etadynsqii ghav
//
LOCUS       XP_053909237             610 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear receptor subfamily 2 group C member 1 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053909237
VERSION     XP_053909237.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053262.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..610
                     /product="nuclear receptor subfamily 2 group C member 1
                     isoform X3"
                     /calculated_mol_wt=67064
     Region          115..201
                     /region_name="NR_DBD_TR2_like"
                     /note="DNA-binding domain of the TR2 and TR4 (human
                     testicular receptor 2 and 4) is composed of two C4-type
                     zinc fingers; cd06967"
                     /db_xref="CDD:143525"
     Site            order(120,123,137,140,156,162,172,175)
                     /site_type="other"
                     /note="zinc binding site [ion binding]"
                     /db_xref="CDD:143525"
     Site            order(130..132,138..139,141,143,146,149,169..170,173,176,
                     187,190)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143525"
     Region          375..596
                     /region_name="NR_LBD_TR2_like"
                     /note="The ligand binding domain of the orphan nuclear
                     receptors TR4 and TR2; cd06952"
                     /db_xref="CDD:132750"
     Site            order(399..400,404,438,442,445,459,486)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:132750"
     Site            order(409,412,416,421,426..427,429..430,433..434)
                     /site_type="active"
                     /note="putative coactivator recognition site [active]"
                     /db_xref="CDD:132750"
     CDS             1..610
                     /gene="NR2C1"
                     /coded_by="XM_054053262.1:156..1988"
                     /db_xref="GeneID:104055188"
ORIGIN      
        1 mdgtaqriqi vpadsglslp qriqivtdqq tgqkiqivta ldqssagkqf iltnhdgstp
       61 skvilarqds tpgkvilatp daagvnqlff aspdisaqhi qiltdnspne qslnkvfdlc
      121 vvcgdkasgr hygavtcegc kgffkrsirk nlvyscrgtk dcvinkhhrn rcqycrlqrc
      181 iafgmkqdsv qcerkpievs rekssncaas tekiyirkdl rsplaatptf vtdnetarst
      241 gllesgmfvn ihqsavksep tvlmtpdkve acqgdlstla nvvtslasls kckdisqsst
      301 elsmieslsn geaslselqq eeqassdvtr afdtlakaln pgesatcqns dsieagvqlm
      361 ggeasmnive iegpllsdah iafrltmpsp mpeylnvhyi cesasrllfl smhwarsips
      421 fqalgqdnsi slvkacwnel ftlglaqcsq vmnvatilta fvnhlhgslq qdklptdrgk
      481 lvmehifklq efcnsmvklc ldgyeyaylk aivlfspdhp glenvvqiek fqekaymefq
      541 dyvtkaypdd tyrlsrlllr lpalrlmsaa iteelffagl ignvqidsii pyilrmetad
      601 ynsqiighav
//
LOCUS       XP_053909243             610 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear receptor subfamily 2 group C member 1 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053909243
VERSION     XP_053909243.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053268.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..610
                     /product="nuclear receptor subfamily 2 group C member 1
                     isoform X3"
                     /calculated_mol_wt=67064
     Region          115..201
                     /region_name="NR_DBD_TR2_like"
                     /note="DNA-binding domain of the TR2 and TR4 (human
                     testicular receptor 2 and 4) is composed of two C4-type
                     zinc fingers; cd06967"
                     /db_xref="CDD:143525"
     Site            order(120,123,137,140,156,162,172,175)
                     /site_type="other"
                     /note="zinc binding site [ion binding]"
                     /db_xref="CDD:143525"
     Site            order(130..132,138..139,141,143,146,149,169..170,173,176,
                     187,190)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143525"
     Region          375..596
                     /region_name="NR_LBD_TR2_like"
                     /note="The ligand binding domain of the orphan nuclear
                     receptors TR4 and TR2; cd06952"
                     /db_xref="CDD:132750"
     Site            order(399..400,404,438,442,445,459,486)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:132750"
     Site            order(409,412,416,421,426..427,429..430,433..434)
                     /site_type="active"
                     /note="putative coactivator recognition site [active]"
                     /db_xref="CDD:132750"
     CDS             1..610
                     /gene="NR2C1"
                     /coded_by="XM_054053268.1:161..1993"
                     /db_xref="GeneID:104055188"
ORIGIN      
        1 mdgtaqriqi vpadsglslp qriqivtdqq tgqkiqivta ldqssagkqf iltnhdgstp
       61 skvilarqds tpgkvilatp daagvnqlff aspdisaqhi qiltdnspne qslnkvfdlc
      121 vvcgdkasgr hygavtcegc kgffkrsirk nlvyscrgtk dcvinkhhrn rcqycrlqrc
      181 iafgmkqdsv qcerkpievs rekssncaas tekiyirkdl rsplaatptf vtdnetarst
      241 gllesgmfvn ihqsavksep tvlmtpdkve acqgdlstla nvvtslasls kckdisqsst
      301 elsmieslsn geaslselqq eeqassdvtr afdtlakaln pgesatcqns dsieagvqlm
      361 ggeasmnive iegpllsdah iafrltmpsp mpeylnvhyi cesasrllfl smhwarsips
      421 fqalgqdnsi slvkacwnel ftlglaqcsq vmnvatilta fvnhlhgslq qdklptdrgk
      481 lvmehifklq efcnsmvklc ldgyeyaylk aivlfspdhp glenvvqiek fqekaymefq
      541 dyvtkaypdd tyrlsrlllr lpalrlmsaa iteelffagl ignvqidsii pyilrmetad
      601 ynsqiighav
//
LOCUS       XP_053909249             563 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear receptor subfamily 2 group C member 1 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053909249
VERSION     XP_053909249.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053274.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..563
                     /product="nuclear receptor subfamily 2 group C member 1
                     isoform X4"
                     /calculated_mol_wt=62197
     Region          68..154
                     /region_name="NR_DBD_TR2_like"
                     /note="DNA-binding domain of the TR2 and TR4 (human
                     testicular receptor 2 and 4) is composed of two C4-type
                     zinc fingers; cd06967"
                     /db_xref="CDD:143525"
     Site            order(73,76,90,93,109,115,125,128)
                     /site_type="other"
                     /note="zinc binding site [ion binding]"
                     /db_xref="CDD:143525"
     Site            order(83..85,91..92,94,96,99,102,122..123,126,129,140,143)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143525"
     Region          328..549
                     /region_name="NR_LBD_TR2_like"
                     /note="The ligand binding domain of the orphan nuclear
                     receptors TR4 and TR2; cd06952"
                     /db_xref="CDD:132750"
     Site            order(352..353,357,391,395,398,412,439)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:132750"
     Site            order(362,365,369,374,379..380,382..383,386..387)
                     /site_type="active"
                     /note="putative coactivator recognition site [active]"
                     /db_xref="CDD:132750"
     CDS             1..563
                     /gene="NR2C1"
                     /coded_by="XM_054053274.1:23..1714"
                     /db_xref="GeneID:104055188"
ORIGIN      
        1 matieelahq iieqqvgeis hsqgavtqtl mdgtaqriqi vpadsglslp qriqiltdns
       61 pneqslnkvf dlcvvcgdka sgrhygavtc egckgffkrs irknlvyscr gtkdcvinkh
      121 hrnrcqycrl qrciafgmkq dsvqcerkpi evsrekssnc aastekiyir kdlrsplaat
      181 ptfvtdneta rstgllesgm fvnihqsavk septvlmtpd kveacqgdls tlanvvtsla
      241 slskckdisq sstelsmies lsngeaslse lqqeeqassd vtrafdtlak alnpgesatc
      301 qnsdsieagv qlmggeasmn iveiegplls dahiafrltm pspmpeylnv hyicesasrl
      361 lflsmhwars ipsfqalgqd nsislvkacw nelftlglaq csqvmnvati ltafvnhlhg
      421 slqqdklptd rgklvmehif klqefcnsmv klcldgyeya ylkaivlfsp dhpglenvvq
      481 iekfqekaym efqdyvtkay pddtyrlsrl llrlpalrlm saaiteelff aglignvqid
      541 siipyilrme tadynsqiig hav
//
LOCUS       XP_053909256             547 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear receptor subfamily 2 group C member 1 isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053909256
VERSION     XP_053909256.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053281.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..547
                     /product="nuclear receptor subfamily 2 group C member 1
                     isoform X5"
                     /calculated_mol_wt=60420
     Region          52..138
                     /region_name="NR_DBD_TR2_like"
                     /note="DNA-binding domain of the TR2 and TR4 (human
                     testicular receptor 2 and 4) is composed of two C4-type
                     zinc fingers; cd06967"
                     /db_xref="CDD:143525"
     Site            order(57,60,74,77,93,99,109,112)
                     /site_type="other"
                     /note="zinc binding site [ion binding]"
                     /db_xref="CDD:143525"
     Site            order(67..69,75..76,78,80,83,86,106..107,110,113,124,127)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143525"
     Region          312..533
                     /region_name="NR_LBD_TR2_like"
                     /note="The ligand binding domain of the orphan nuclear
                     receptors TR4 and TR2; cd06952"
                     /db_xref="CDD:132750"
     Site            order(336..337,341,375,379,382,396,423)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:132750"
     Site            order(346,349,353,358,363..364,366..367,370..371)
                     /site_type="active"
                     /note="putative coactivator recognition site [active]"
                     /db_xref="CDD:132750"
     CDS             1..547
                     /gene="NR2C1"
                     /coded_by="XM_054053281.1:136..1779"
                     /db_xref="GeneID:104055188"
ORIGIN      
        1 mlishsqgav tqtlmdgtaq riqivpadsg lslpqriqil tdnspneqsl nkvfdlcvvc
       61 gdkasgrhyg avtcegckgf fkrsirknlv yscrgtkdcv inkhhrnrcq ycrlqrciaf
      121 gmkqdsvqce rkpievsrek ssncaastek iyirkdlrsp laatptfvtd netarstgll
      181 esgmfvnihq savkseptvl mtpdkveacq gdlstlanvv tslaslskck disqsstels
      241 mieslsngea slselqqeeq assdvtrafd tlakalnpge satcqnsdsi eagvqlmgge
      301 asmniveieg pllsdahiaf rltmpspmpe ylnvhyices asrllflsmh warsipsfqa
      361 lgqdnsislv kacwnelftl glaqcsqvmn vatiltafvn hlhgslqqdk lptdrgklvm
      421 ehifklqefc nsmvklcldg yeyaylkaiv lfspdhpgle nvvqiekfqe kaymefqdyv
      481 tkaypddtyr lsrlllrlpa lrlmsaaite elffaglign vqidsiipyi lrmetadyns
      541 qiighav
//
LOCUS       XP_053909264             533 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear receptor subfamily 2 group C member 1 isoform X6 [Cuculus
            canorus].
ACCESSION   XP_053909264
VERSION     XP_053909264.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053289.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..533
                     /product="nuclear receptor subfamily 2 group C member 1
                     isoform X6"
                     /calculated_mol_wt=58953
     Region          38..124
                     /region_name="NR_DBD_TR2_like"
                     /note="DNA-binding domain of the TR2 and TR4 (human
                     testicular receptor 2 and 4) is composed of two C4-type
                     zinc fingers; cd06967"
                     /db_xref="CDD:143525"
     Site            order(43,46,60,63,79,85,95,98)
                     /site_type="other"
                     /note="zinc binding site [ion binding]"
                     /db_xref="CDD:143525"
     Site            order(53..55,61..62,64,66,69,72,92..93,96,99,110,113)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143525"
     Region          298..519
                     /region_name="NR_LBD_TR2_like"
                     /note="The ligand binding domain of the orphan nuclear
                     receptors TR4 and TR2; cd06952"
                     /db_xref="CDD:132750"
     Site            order(322..323,327,361,365,368,382,409)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:132750"
     Site            order(332,335,339,344,349..350,352..353,356..357)
                     /site_type="active"
                     /note="putative coactivator recognition site [active]"
                     /db_xref="CDD:132750"
     CDS             1..533
                     /gene="NR2C1"
                     /coded_by="XM_054053289.1:158..1759"
                     /db_xref="GeneID:104055188"
ORIGIN      
        1 mdgtaqriqi vpadsglslp qriqiltdns pneqslnkvf dlcvvcgdka sgrhygavtc
       61 egckgffkrs irknlvyscr gtkdcvinkh hrnrcqycrl qrciafgmkq dsvqcerkpi
      121 evsrekssnc aastekiyir kdlrsplaat ptfvtdneta rstgllesgm fvnihqsavk
      181 septvlmtpd kveacqgdls tlanvvtsla slskckdisq sstelsmies lsngeaslse
      241 lqqeeqassd vtrafdtlak alnpgesatc qnsdsieagv qlmggeasmn iveiegplls
      301 dahiafrltm pspmpeylnv hyicesasrl lflsmhwars ipsfqalgqd nsislvkacw
      361 nelftlglaq csqvmnvati ltafvnhlhg slqqdklptd rgklvmehif klqefcnsmv
      421 klcldgyeya ylkaivlfsp dhpglenvvq iekfqekaym efqdyvtkay pddtyrlsrl
      481 llrlpalrlm saaiteelff aglignvqid siipyilrme tadynsqiig hav
//
LOCUS       XP_053909276             146 aa            linear   VRT 09-MAR-2023
DEFINITION  NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
            [Cuculus canorus].
ACCESSION   XP_053909276
VERSION     XP_053909276.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053301.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..146
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..146
                     /product="NADH dehydrogenase [ubiquinone] 1 alpha
                     subcomplex subunit 12"
                     /calculated_mol_wt=16885
     Region          38..138
                     /region_name="NDUFA12"
                     /note="NADH ubiquinone oxidoreductase subunit NDUFA12;
                     pfam05071"
                     /db_xref="CDD:461542"
     CDS             1..146
                     /gene="NDUFA12"
                     /coded_by="XM_054053301.1:71..511"
                     /db_xref="GeneID:104061855"
ORIGIN      
        1 maeqiqvlrr alkhlgghgg irgallqllr vndlktgtli gidkygnkyy edkrnffgrh
       61 rwviytdemn gkntfwevdg smvppewhrw lhsmtddppt thppvarkfi wenhkfnlsg
      121 tpgqyvpyst trkkiqewip pttask
//
LOCUS       XP_053909294             309 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier family 35 member E3 [Cuculus canorus].
ACCESSION   XP_053909294
VERSION     XP_053909294.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053319.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..309
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..309
                     /product="solute carrier family 35 member E3"
                     /calculated_mol_wt=33871
     Region          21..290
                     /region_name="TPT"
                     /note="Triose-phosphate Transporter family; cl26744"
                     /db_xref="CDD:474852"
     CDS             1..309
                     /gene="SLC35E3"
                     /coded_by="XM_054053319.1:77..1006"
                     /db_xref="GeneID:128850291"
ORIGIN      
        1 mgwlpaqgrl aagllvnlga sicivflnkw lyvrlgfpnl sltlvhfait wlglyacqal
       61 gafspkslrp sqvlplalsf cgfvvftnls lqsntigtyq lakamttpvi vviqsvaygk
      121 tfplrikltl vpitlgvfln syydvkfnll gmvfatlgvl vtslyqvwvg akqhelqvns
      181 mqllyyqapm ssamllfiip ffepvfgegg ifgpwtlsav imvllsgiia fmvnlsiywi
      241 igntspvtyn mfghfkfcit llggcllfkd plsvnqglgi lctllgilay thfklneqes
      301 sksklvqrp
//
LOCUS       XP_053909306             338 aa            linear   VRT 09-MAR-2023
DEFINITION  organic solute transporter subunit alpha isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053909306
VERSION     XP_053909306.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053331.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..338
                     /product="organic solute transporter subunit alpha isoform
                     X1"
                     /calculated_mol_wt=37884
     Region          35..301
                     /region_name="Solute_trans_a"
                     /note="Organic solute transporter Ostalpha; pfam03619"
                     /db_xref="CDD:460991"
     CDS             1..338
                     /gene="LOC104059423"
                     /coded_by="XM_054053331.1:14..1030"
                     /db_xref="GeneID:104059423"
ORIGIN      
        1 megdsngtlr ppcaagqppy aqemlrsldl pgkflfailt lmtlianlvf ieeavyiyrk
       61 ipstkrsiii winaaapvia stscigmwip rssmftdfta avffaivihk flmmmisecg
      121 gqklllkrfe nghfkistgp ccccclclpr vritrrtlfw lklgtfqfaf lrpvfmflsi
      181 vlwtngnytl ynlspkgaai wiscfvgvlt iialwpvgim fqqvrtllsc kniitkfaly
      241 qfililnhlq aaiinilamq riipcappls ssargahitq qllimemfli tlisrvvyrr
      301 ryndleppdc takedgddkq tpevilngav sedglprv
//
LOCUS       XP_053909312             338 aa            linear   VRT 09-MAR-2023
DEFINITION  organic solute transporter subunit alpha isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053909312
VERSION     XP_053909312.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053337.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..338
                     /product="organic solute transporter subunit alpha isoform
                     X1"
                     /calculated_mol_wt=37884
     Region          35..301
                     /region_name="Solute_trans_a"
                     /note="Organic solute transporter Ostalpha; pfam03619"
                     /db_xref="CDD:460991"
     CDS             1..338
                     /gene="LOC104059423"
                     /coded_by="XM_054053337.1:14..1030"
                     /db_xref="GeneID:104059423"
ORIGIN      
        1 megdsngtlr ppcaagqppy aqemlrsldl pgkflfailt lmtlianlvf ieeavyiyrk
       61 ipstkrsiii winaaapvia stscigmwip rssmftdfta avffaivihk flmmmisecg
      121 gqklllkrfe nghfkistgp ccccclclpr vritrrtlfw lklgtfqfaf lrpvfmflsi
      181 vlwtngnytl ynlspkgaai wiscfvgvlt iialwpvgim fqqvrtllsc kniitkfaly
      241 qfililnhlq aaiinilamq riipcappls ssargahitq qllimemfli tlisrvvyrr
      301 ryndleppdc takedgddkq tpevilngav sedglprv
//
LOCUS       XP_053909316             297 aa            linear   VRT 09-MAR-2023
DEFINITION  organic solute transporter subunit alpha isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053909316
VERSION     XP_053909316.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053341.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..297
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..297
                     /product="organic solute transporter subunit alpha isoform
                     X2"
                     /calculated_mol_wt=33482
     Region          1..260
                     /region_name="Solute_trans_a"
                     /note="Organic solute transporter Ostalpha; pfam03619"
                     /db_xref="CDD:460991"
     CDS             1..297
                     /gene="LOC104059423"
                     /coded_by="XM_054053341.1:150..1043"
                     /db_xref="GeneID:104059423"
ORIGIN      
        1 mtlianlvfi eeavyiyrki pstkrsiiiw inaaapvias tscigmwipr ssmftdftaa
       61 vffaivihkf lmmmisecgg qklllkrfen ghfkistgpc cccclclprv ritrrtlfwl
      121 klgtfqfafl rpvfmflsiv lwtngnytly nlspkgaaiw iscfvgvlti ialwpvgimf
      181 qqvrtllsck niitkfalyq fililnhlqa aiinilamqr iipcapplss sargahitqq
      241 llimemflit lisrvvyrrr yndleppdct akedgddkqt pevilngavs edglprv
//
LOCUS       XP_009567031            1684 aa            linear   VRT 09-MAR-2023
DEFINITION  complement C4 [Cuculus canorus].
ACCESSION   XP_009567031
VERSION     XP_009567031.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568736.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567031.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1684
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1684
                     /product="complement C4"
                     /calculated_mol_wt=189612
     Region          21..127
                     /region_name="MG1"
                     /note="Macroglobulin domain MG1; pfam17790"
                     /db_xref="CDD:465508"
     Region          <130..1467
                     /region_name="YfaS"
                     /note="Uncharacterized conserved protein YfaS,
                     alpha-2-macroglobulin family [General function prediction
                     only]; COG2373"
                     /db_xref="CDD:441940"
     Region          977..1266
                     /region_name="complement_C3_C4_C5"
                     /note="Proteins similar to C3, C4 and C5 of vertebrate
                     complement. The vertebrate complement system, comprised of
                     a large number of distinct plasma proteins, is an effector
                     of both the acquired and innate immune systems. The point
                     of convergence of the...; cd02896"
                     /db_xref="CDD:239226"
     Site            order(991,993..994,997,1040,1050,1053,1103,1105..1106,
                     1250)
                     /site_type="other"
                     /note="surface patch"
                     /db_xref="CDD:239226"
     Site            order(991..994,1106)
                     /site_type="active"
                     /db_xref="CDD:239226"
     Site            991..994
                     /site_type="active"
                     /note="thioester region [active]"
                     /db_xref="CDD:239226"
     Site            order(1092,1096,1098,1106,1111..1112)
                     /site_type="other"
                     /note="specificity defining residues"
                     /db_xref="CDD:239226"
     Region          1424..1514
                     /region_name="A2M_recep"
                     /note="A-macroglobulin receptor binding domain; pfam07677"
                     /db_xref="CDD:462226"
     Region          1531..1675
                     /region_name="NTR_like"
                     /note="NTR_like domain; a beta barrel with an
                     oligosaccharide/oligonucleotide-binding fold found in
                     netrins, complement proteins, tissue inhibitors of
                     metalloproteases (TIMP), and procollagen C-proteinase
                     enhancers (PCOLCE), amongst others. In netrins, the...;
                     cl02512"
                     /db_xref="CDD:470599"
     CDS             1..1684
                     /gene="LOC104066164"
                     /coded_by="XM_009568736.2:187..5241"
                     /db_xref="GeneID:104066164"
ORIGIN      
        1 merlvflisf csllsntqqa psflitapnv vhlgteetit vqvhgaqhpv qvtvyfkdei
       61 knqllserii fnlnqnnnyq eikkvmvkpg llrqdvfkks nrsyvllvte skelykdtiq
      121 strillsskk gyifiqtdkp iytpsskvry rifildnamr ptddtvtvvv lnskgmvvkk
      181 tdrkiksafs gnfeipdvse pgtwkikawf hqyemsnvsa efevknyelp sfdvkliplq
      241 pyyhiwnenf vfdieakhsy gkgiqgaayv rfgiidenek kvfipgleqq lsiqdgkgkv
      301 tlnttlleek lrksistleg fhlyvavttv etasgemree elsnvkfvks pyvvdlsntk
      361 nyfvpgapfs vvasvtlvdg spaaslpvtt tvtspgkppm kktalsnkeg lipftfnipg
      421 daqmlqimvk aeegkekles peasiraery qsptsnylsi siphtvvtpg dnlhitlndi
      481 hqsgsgkidy fyymvvargq vellgrvpss niiinlkite kmvpafrfla yyfiankgrq
      541 eivadsvwvd vmdvcegkik vrtereryep tdninlliet dhagtvalaa vdkavfilnk
      601 knkltvkkvf samnsydlgc sagggadnvq vftdvglafi sdtiksnare dykclqatrr
      661 qkrsfdfqke msgiaskyrn tdlhkccqdg mklnpmkfsc akrltkvags pecrkafkdc
      721 cekatalrkq akrrtrvgla rfydgheeef ddisvdlrsy fpeswwwnfe evkspgkhrv
      781 qnfvpdsitt wevqaisisp qkgfciadph tftvfkdvfv slrlpysvkr heqleikavv
      841 ynylpkdlql ivtldavkgl ctagatekav qqmlvakgns atpayfsvvp lnvgeipiti
      901 tafdrdsgyg dsirknlnvv aegvlqreek ticinsdars htldlnrpsd mvpdsdshvf
      961 vslkgnimde pvenclsltg vekliqvptg caeqtmvkma pavyaieyld aseqwvnfnp
     1021 erkeeainmi ekgytrllef qkvdgsygaf krtpssvwlt afivkvltrc qeyisvqhsh
     1081 iqnsisylln qqqaddsfhd hhpvmdrtmq ggigsaeedl altafvtial qqtlrvyess
     1141 dvvrvvrrav aymknqllkn sncystaita yaltlvqsns eeaqmakekl rgcsvfdsak
     1201 qqrywgngkd avsvettaya llqtlllkdm eyakpiatwl terrnygggy cstqdtvval
     1261 ealsaysiqt ldtastnltv klatpgrqkd ytfiltdahe tiqkqlefel grklevsvhg
     1321 rgngtmsilk vywsselknn tcedliltve vegsiehsea iysyenydye dsvatenstf
     1381 kplseiewfd ihsrrkrdvi ssgkaeslqy kvcvrstgsn apkmslvdls llsglepdtk
     1441 dldqlvtssd qyiqhyeyke gkvllyfgel tsgpdpdcis fgakqinpmg lvqpanaily
     1501 dfynpdrkcs vfysapkhsa mlskvchanv cqcaegpcpr qkstfskamt qttrlsfacy
     1561 hpvadyvyev ellnstqknv fdyyeakihr ilkvtndesi qlgvhrqflk rstckldmvt
     1621 gkryllmgkd gktvdcnnkm qyfldaqtwv ekipddnecr ttlhrqacah lqdfmntsds
     1681 lcll
//
LOCUS       XP_053909323             285 aa            linear   VRT 09-MAR-2023
DEFINITION  G1/S-specific cyclin-D2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053909323
VERSION     XP_053909323.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053348.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..285
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..285
                     /product="G1/S-specific cyclin-D2 isoform X1"
                     /calculated_mol_wt=32440
     Region          1..150
                     /region_name="CYCLIN_CCND2_rpt1"
                     /note="first cyclin box found in G1/S-specific cyclin-D2
                     (CCND2); cd20574"
                     /db_xref="CDD:410277"
     Site            order(33,111..112,114,117,119..120,137,140..141,148..150)
                     /site_type="other"
                     /note="putative CDK interface [polypeptide binding]"
                     /db_xref="CDD:410277"
     Region          155..253
                     /region_name="CYCLIN_SF"
                     /note="Cyclin box fold superfamily; cl40454"
                     /db_xref="CDD:477360"
     CDS             1..285
                     /gene="CCND2"
                     /coded_by="XM_054053348.1:752..1609"
                     /db_xref="GeneID:104066622"
ORIGIN      
        1 mellccevds mrralpdpnl lyddrvlhnl ltieekylpq csyfkcfqkd iqpfmrrmva
       61 twmlevceeq kceeevfpla mnyldrflav vptrkchlql lgavcmflas klketiplta
      121 eklciytdns ikpqellewe lvvlgklkwn laaitphdfi ehilrklplp kdklllirkh
      181 aqtfialcat dfnfamypps miatgsvgaa icglqlddsd sltdllakit ntdvdclkac
      241 qeqieavlvn slrqvrqqeq qsspsktmde ldqastptdv rdinl
//
LOCUS       XP_053909330             285 aa            linear   VRT 09-MAR-2023
DEFINITION  G1/S-specific cyclin-D2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053909330
VERSION     XP_053909330.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053355.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..285
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..285
                     /product="G1/S-specific cyclin-D2 isoform X1"
                     /calculated_mol_wt=32440
     Region          1..150
                     /region_name="CYCLIN_CCND2_rpt1"
                     /note="first cyclin box found in G1/S-specific cyclin-D2
                     (CCND2); cd20574"
                     /db_xref="CDD:410277"
     Site            order(33,111..112,114,117,119..120,137,140..141,148..150)
                     /site_type="other"
                     /note="putative CDK interface [polypeptide binding]"
                     /db_xref="CDD:410277"
     Region          155..253
                     /region_name="CYCLIN_SF"
                     /note="Cyclin box fold superfamily; cl40454"
                     /db_xref="CDD:477360"
     CDS             1..285
                     /gene="CCND2"
                     /coded_by="XM_054053355.1:147..1004"
                     /db_xref="GeneID:104066622"
ORIGIN      
        1 mellccevds mrralpdpnl lyddrvlhnl ltieekylpq csyfkcfqkd iqpfmrrmva
       61 twmlevceeq kceeevfpla mnyldrflav vptrkchlql lgavcmflas klketiplta
      121 eklciytdns ikpqellewe lvvlgklkwn laaitphdfi ehilrklplp kdklllirkh
      181 aqtfialcat dfnfamypps miatgsvgaa icglqlddsd sltdllakit ntdvdclkac
      241 qeqieavlvn slrqvrqqeq qsspsktmde ldqastptdv rdinl
//
LOCUS       XP_053909339             285 aa            linear   VRT 09-MAR-2023
DEFINITION  G1/S-specific cyclin-D2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053909339
VERSION     XP_053909339.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053364.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..285
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..285
                     /product="G1/S-specific cyclin-D2 isoform X1"
                     /calculated_mol_wt=32440
     Region          1..150
                     /region_name="CYCLIN_CCND2_rpt1"
                     /note="first cyclin box found in G1/S-specific cyclin-D2
                     (CCND2); cd20574"
                     /db_xref="CDD:410277"
     Site            order(33,111..112,114,117,119..120,137,140..141,148..150)
                     /site_type="other"
                     /note="putative CDK interface [polypeptide binding]"
                     /db_xref="CDD:410277"
     Region          155..253
                     /region_name="CYCLIN_SF"
                     /note="Cyclin box fold superfamily; cl40454"
                     /db_xref="CDD:477360"
     CDS             1..285
                     /gene="CCND2"
                     /coded_by="XM_054053364.1:415..1272"
                     /db_xref="GeneID:104066622"
ORIGIN      
        1 mellccevds mrralpdpnl lyddrvlhnl ltieekylpq csyfkcfqkd iqpfmrrmva
       61 twmlevceeq kceeevfpla mnyldrflav vptrkchlql lgavcmflas klketiplta
      121 eklciytdns ikpqellewe lvvlgklkwn laaitphdfi ehilrklplp kdklllirkh
      181 aqtfialcat dfnfamypps miatgsvgaa icglqlddsd sltdllakit ntdvdclkac
      241 qeqieavlvn slrqvrqqeq qsspsktmde ldqastptdv rdinl
//
LOCUS       XP_053909349             276 aa            linear   VRT 09-MAR-2023
DEFINITION  G1/S-specific cyclin-D2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053909349
VERSION     XP_053909349.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053374.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..276
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..276
                     /product="G1/S-specific cyclin-D2 isoform X2"
                     /calculated_mol_wt=31381
     Region          1..150
                     /region_name="CYCLIN_CCND2_rpt1"
                     /note="first cyclin box found in G1/S-specific cyclin-D2
                     (CCND2); cd20574"
                     /db_xref="CDD:410277"
     Site            order(33,111..112,114,117,119..120,137,140..141,148..150)
                     /site_type="other"
                     /note="putative CDK interface [polypeptide binding]"
                     /db_xref="CDD:410277"
     Region          155..246
                     /region_name="CYCLIN_SF"
                     /note="Cyclin box fold superfamily; cl40454"
                     /db_xref="CDD:477360"
     CDS             1..276
                     /gene="CCND2"
                     /coded_by="XM_054053374.1:752..1582"
                     /db_xref="GeneID:104066622"
ORIGIN      
        1 mellccevds mrralpdpnl lyddrvlhnl ltieekylpq csyfkcfqkd iqpfmrrmva
       61 twmlevceeq kceeevfpla mnyldrflav vptrkchlql lgavcmflas klketiplta
      121 eklciytdns ikpqellewe lvvlgklkwn laaitphdfi ehilrklplp kdklllirkh
      181 aqtfialcat dfnfamypps miatgsvgaa icglqlddsd sltdllakit ntdvgfllcs
      241 kqtqtlklpf speagvhqta dtrtalklvk nrsrrc
//
LOCUS       XP_053909356             242 aa            linear   VRT 09-MAR-2023
DEFINITION  G1/S-specific cyclin-D2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053909356
VERSION     XP_053909356.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053381.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..242
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..242
                     /product="G1/S-specific cyclin-D2 isoform X3"
                     /calculated_mol_wt=27751
     Region          1..150
                     /region_name="CYCLIN_CCND2_rpt1"
                     /note="first cyclin box found in G1/S-specific cyclin-D2
                     (CCND2); cd20574"
                     /db_xref="CDD:410277"
     Site            order(33,111..112,114,117,119..120,137,140..141,148..150)
                     /site_type="other"
                     /note="putative CDK interface [polypeptide binding]"
                     /db_xref="CDD:410277"
     Region          155..234
                     /region_name="CYCLIN_SF"
                     /note="Cyclin box fold superfamily; cl40454"
                     /db_xref="CDD:477360"
     CDS             1..242
                     /gene="CCND2"
                     /coded_by="XM_054053381.1:752..1480"
                     /db_xref="GeneID:104066622"
ORIGIN      
        1 mellccevds mrralpdpnl lyddrvlhnl ltieekylpq csyfkcfqkd iqpfmrrmva
       61 twmlevceeq kceeevfpla mnyldrflav vptrkchlql lgavcmflas klketiplta
      121 eklciytdns ikpqellewe lvvlgklkwn laaitphdfi ehilrklplp kdklllirkh
      181 aqtfialcat dfnfamypps miatgsvgaa icglqlddsd sltdllakit ntdvrrlskr
      241 kk
//
LOCUS       XP_053909367             549 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-aminobutyric acid receptor subunit gamma-3 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053909367
VERSION     XP_053909367.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053392.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..549
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..549
                     /product="gamma-aminobutyric acid receptor subunit gamma-3
                     isoform X1"
                     /calculated_mol_wt=62748
     Region          143..546
                     /region_name="LIC"
                     /note="Cation transporter family protein; cl42365"
                     /db_xref="CDD:455710"
     Region          164..345
                     /region_name="LGIC_ECD_GABAAR_G"
                     /note="extracellular domain of gamma-aminobutyric acid
                     receptor subunit gamma; cd19000"
                     /db_xref="CDD:349801"
     Site            order(171,190)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:349801"
     Site            order(174,176..177,182..183,190,192..193,210,212..213,
                     222..227,230,232,234..235,241..243,245,255..257,285,345)
                     /site_type="other"
                     /note="pentamer interface [polypeptide binding]"
                     /db_xref="CDD:349801"
     Region          264..278
                     /region_name="Cys-loop"
                     /note="Cys-loop [structural motif]"
                     /db_xref="CDD:349801"
     CDS             1..549
                     /gene="GABRG3"
                     /coded_by="XM_054053392.1:488..2137"
                     /db_xref="GeneID:104066351"
ORIGIN      
        1 mcmhafvqst qtstfvqpdt eahtncalcv clsvcgrlyc rslsvaalvt wiracmyigm
       61 pevltttrpg aaptpllpse dsitapagna aqimsakllp vffllsvfha csrkveedey
      121 edgitnqkwv lapktqdtdv tlilnkllre ydkklrpdig lkptvidvdi yvnsigpvss
      181 inmeyqidif faqtwtdsrl rfnstmkilt lnsnmvgliw ipdtifrnsk taeahwittp
      241 nqllriwndg kilytlrlti naecqlqlhn fpmdehscpl ifssygypke emiyrwrkns
      301 veaadqkswr lyqfdfmglr ntsevvktsa gdyvvmtiyf dlsrrmgyft iqtyipcilt
      361 vvlswvsfwi kkdatparta lgittvltmt tlstiarksl prvsyvtamd lfvtvcflfv
      421 faalmeyatl nyysscrkpn cakkkkslpd vsfghvmnys vldmrppttv ialnnamywq
      481 efedacvyec ldgkdcqsff ccyeecksgs wrrgrihidi leldsysrvf fptsfllfnl
      541 vywvgylyl
//
LOCUS       XP_053909371             519 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-aminobutyric acid receptor subunit gamma-3 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053909371
VERSION     XP_053909371.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053396.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..519
                     /product="gamma-aminobutyric acid receptor subunit gamma-3
                     isoform X2"
                     /calculated_mol_wt=59185
     Region          143..516
                     /region_name="LIC"
                     /note="Cation transporter family protein; cl42365"
                     /db_xref="CDD:455710"
     Region          164..330
                     /region_name="LGIC_ECD"
                     /note="extracellular domain (ECD) of Cys-loop
                     neurotransmitter-gated ion channels (also known as
                     ligand-gated ion channel (LGIC)); cl28912"
                     /db_xref="CDD:475126"
     Site            order(174,176,182..183,190,208,210,222..223,225,227..228,
                     241..243,245,255,257,259,263,285)
                     /site_type="other"
                     /note="pentamer interface [polypeptide binding]"
                     /db_xref="CDD:349787"
     CDS             1..519
                     /gene="GABRG3"
                     /coded_by="XM_054053396.1:491..2050"
                     /db_xref="GeneID:104066351"
ORIGIN      
        1 mcmhafvqst qtstfvqpdt eahtncalcv clsvcgrlyc rslsvaalvt wiracmyigm
       61 pevltttrpg aaptpllpse dsitapagna aqimsakllp vffllsvfha csrkveedey
      121 edgitnqkwv lapktqdtdv tlilnkllre ydkklrpdig lkptvidvdi yvnsigpvss
      181 inmeyqidif faqtwtdsrl rfnstmkilt lnsnmvgliw ipdtifrnsk taeahwittp
      241 nqllriwndg kilytlrlti naecqlqlhn fpmdehscpl ifssygypke emiyrwrkns
      301 veaadqkswr lyqfdfmglr ntsevvktsa vvlswvsfwi kkdatparta lgittvltmt
      361 tlstiarksl prvsyvtamd lfvtvcflfv faalmeyatl nyysscrkpn cakkkkslpd
      421 vsfghvmnys vldmrppttv ialnnamywq efedacvyec ldgkdcqsff ccyeecksgs
      481 wrrgrihidi leldsysrvf fptsfllfnl vywvgylyl
//
LOCUS       XP_053909381             456 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-aminobutyric acid receptor subunit gamma-3 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053909381
VERSION     XP_053909381.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053406.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..456
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..456
                     /product="gamma-aminobutyric acid receptor subunit gamma-3
                     isoform X3"
                     /calculated_mol_wt=52903
     Region          50..453
                     /region_name="LIC"
                     /note="Cation transporter family protein; cl42365"
                     /db_xref="CDD:455710"
     Region          71..252
                     /region_name="LGIC_ECD_GABAAR_G"
                     /note="extracellular domain of gamma-aminobutyric acid
                     receptor subunit gamma; cd19000"
                     /db_xref="CDD:349801"
     Site            order(78,97)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:349801"
     Site            order(81,83..84,89..90,97,99..100,117,119..120,129..134,
                     137,139,141..142,148..150,152,162..164,192,252)
                     /site_type="other"
                     /note="pentamer interface [polypeptide binding]"
                     /db_xref="CDD:349801"
     Region          171..185
                     /region_name="Cys-loop"
                     /note="Cys-loop [structural motif]"
                     /db_xref="CDD:349801"
     CDS             1..456
                     /gene="GABRG3"
                     /coded_by="XM_054053406.1:875..2245"
                     /db_xref="GeneID:104066351"
ORIGIN      
        1 msakllpvff llsvfhacsr kveedeyedg itnqkwvlap ktqdtdvtli lnkllreydk
       61 klrpdiglkp tvidvdiyvn sigpvssinm eyqidiffaq twtdsrlrfn stmkiltlns
      121 nmvgliwipd tifrnsktae ahwittpnql lriwndgkil ytlrltinae cqlqlhnfpm
      181 dehscplifs sygypkeemi yrwrknsvea adqkswrlyq fdfmglrnts evvktsagdy
      241 vvmtiyfdls rrmgyftiqt yipciltvvl swvsfwikkd atpartalgi ttvltmttls
      301 tiarkslprv syvtamdlfv tvcflfvfaa lmeyatlnyy sscrkpncak kkkslpdvsf
      361 ghvmnysvld mrppttvial nnamywqefe dacvyecldg kdcqsffccy eecksgswrr
      421 grihidilel dsysrvffpt sfllfnlvyw vgylyl
//
LOCUS       XP_053909399             597 aa            linear   VRT 09-MAR-2023
DEFINITION  xaa-Pro aminopeptidase 3 [Cuculus canorus].
ACCESSION   XP_053909399
VERSION     XP_053909399.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053424.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..597
                     /product="xaa-Pro aminopeptidase 3"
                     /calculated_mol_wt=66249
     Region          156..299
                     /region_name="AMP_N"
                     /note="Aminopeptidase P, N-terminal domain; smart01011"
                     /db_xref="CDD:198079"
     Region          341..580
                     /region_name="Prolidase"
                     /note="E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase,
                     X-Pro dipeptidase, proline dipeptidase., imidodipeptidase,
                     peptidase D, gamma-peptidase. Catalyses hydrolysis of
                     Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline
                     analogs. No action on Pro-Pro; cd01087"
                     /db_xref="CDD:238520"
     Site            order(403,420,431,514,541,565)
                     /site_type="active"
                     /db_xref="CDD:238520"
     CDS             1..597
                     /gene="XPNPEP3"
                     /coded_by="XM_054053424.1:29..1822"
                     /db_xref="GeneID:104055503"
ORIGIN      
        1 mrhrlvrprp ilaspravag tfqkqrriss tlvppvavsl pvcrplpptp lpnsyvsrap
       61 rapppapgad wprggrrsli tsssgaggat vrdmwhlaar rllaalrggs vckscalrrf
      121 siqpaqqkki pnrylgqpsp fthphllkpg evtpglsqve yalrrhklma liqkeahgwd
      181 gmdhtvills nptyymtndi pyvfhqdtnf lylcgfqepd silvlqsipg kalpshkail
      241 fvprrdpsre lwdgprsgtd gaialtgvde aytieefrhl vaklkgesni iwydltkpth
      301 tvlhsdymes laeikarskn riqgirhlvq nlrlikspae iermkiagrv taeafietmf
      361 askapvdeaf lyakfefecr argadilayp pvvaggnrsn tlhyvknnql ikdgemvlld
      421 ggcesscyvs ditrtwpvng rftkpqaely qavldiqksc lslcspgvsl eniyslmlsl
      481 igqklkdlgv lkssitesyf fkavrkycph hvghylgmdv hdtpdisrsi plqpgmviti
      541 epgiyipedd vsaperfrgi gvrieddvvi tedaplllst dcpkeiydie qicgrss
//
LOCUS       XP_053909425             202 aa            linear   VRT 09-MAR-2023
DEFINITION  josephin-1 [Cuculus canorus].
ACCESSION   XP_053909425
VERSION     XP_053909425.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053450.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..202
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..202
                     /product="josephin-1"
                     /calculated_mol_wt=23163
     Region          31..179
                     /region_name="Josephin"
                     /note="pfam02099"
                     /db_xref="CDD:460444"
     CDS             1..202
                     /gene="JOSD1"
                     /coded_by="XM_054053450.1:885..1493"
                     /db_xref="GeneID:104065890"
ORIGIN      
        1 mscvpwkgdk tksesaeppq qpplhiyhek qrrelcalha lnnvfqdsna ftretlqeif
       61 qrlspntmvt phkksmlgng nydvnvimaa lqtkgyeavw wdkrrdvnvi alsnvmgfim
      121 nlpsslcwgp lklplkrqhw icvrevggty ynldsklkvp ewiggeselr kflkhqlrgk
      181 ncelllvvpe eveahqswra dv
//
LOCUS       XP_053909430             202 aa            linear   VRT 09-MAR-2023
DEFINITION  josephin-1 [Cuculus canorus].
ACCESSION   XP_053909430
VERSION     XP_053909430.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053455.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..202
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..202
                     /product="josephin-1"
                     /calculated_mol_wt=23163
     Region          31..179
                     /region_name="Josephin"
                     /note="pfam02099"
                     /db_xref="CDD:460444"
     CDS             1..202
                     /gene="JOSD1"
                     /coded_by="XM_054053455.1:734..1342"
                     /db_xref="GeneID:104065890"
ORIGIN      
        1 mscvpwkgdk tksesaeppq qpplhiyhek qrrelcalha lnnvfqdsna ftretlqeif
       61 qrlspntmvt phkksmlgng nydvnvimaa lqtkgyeavw wdkrrdvnvi alsnvmgfim
      121 nlpsslcwgp lklplkrqhw icvrevggty ynldsklkvp ewiggeselr kflkhqlrgk
      181 ncelllvvpe eveahqswra dv
//
LOCUS       XP_053909439             202 aa            linear   VRT 09-MAR-2023
DEFINITION  josephin-1 [Cuculus canorus].
ACCESSION   XP_053909439
VERSION     XP_053909439.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053464.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..202
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..202
                     /product="josephin-1"
                     /calculated_mol_wt=23163
     Region          31..179
                     /region_name="Josephin"
                     /note="pfam02099"
                     /db_xref="CDD:460444"
     CDS             1..202
                     /gene="JOSD1"
                     /coded_by="XM_054053464.1:2503..3111"
                     /db_xref="GeneID:104065890"
ORIGIN      
        1 mscvpwkgdk tksesaeppq qpplhiyhek qrrelcalha lnnvfqdsna ftretlqeif
       61 qrlspntmvt phkksmlgng nydvnvimaa lqtkgyeavw wdkrrdvnvi alsnvmgfim
      121 nlpsslcwgp lklplkrqhw icvrevggty ynldsklkvp ewiggeselr kflkhqlrgk
      181 ncelllvvpe eveahqswra dv
//
LOCUS       XP_053909448             202 aa            linear   VRT 09-MAR-2023
DEFINITION  josephin-1 [Cuculus canorus].
ACCESSION   XP_053909448
VERSION     XP_053909448.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053473.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..202
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..202
                     /product="josephin-1"
                     /calculated_mol_wt=23163
     Region          31..179
                     /region_name="Josephin"
                     /note="pfam02099"
                     /db_xref="CDD:460444"
     CDS             1..202
                     /gene="JOSD1"
                     /coded_by="XM_054053473.1:723..1331"
                     /db_xref="GeneID:104065890"
ORIGIN      
        1 mscvpwkgdk tksesaeppq qpplhiyhek qrrelcalha lnnvfqdsna ftretlqeif
       61 qrlspntmvt phkksmlgng nydvnvimaa lqtkgyeavw wdkrrdvnvi alsnvmgfim
      121 nlpsslcwgp lklplkrqhw icvrevggty ynldsklkvp ewiggeselr kflkhqlrgk
      181 ncelllvvpe eveahqswra dv
//
LOCUS       XP_053909457             202 aa            linear   VRT 09-MAR-2023
DEFINITION  josephin-1 [Cuculus canorus].
ACCESSION   XP_053909457
VERSION     XP_053909457.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053482.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..202
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..202
                     /product="josephin-1"
                     /calculated_mol_wt=23163
     Region          31..179
                     /region_name="Josephin"
                     /note="pfam02099"
                     /db_xref="CDD:460444"
     CDS             1..202
                     /gene="JOSD1"
                     /coded_by="XM_054053482.1:800..1408"
                     /db_xref="GeneID:104065890"
ORIGIN      
        1 mscvpwkgdk tksesaeppq qpplhiyhek qrrelcalha lnnvfqdsna ftretlqeif
       61 qrlspntmvt phkksmlgng nydvnvimaa lqtkgyeavw wdkrrdvnvi alsnvmgfim
      121 nlpsslcwgp lklplkrqhw icvrevggty ynldsklkvp ewiggeselr kflkhqlrgk
      181 ncelllvvpe eveahqswra dv
//
LOCUS       XP_053909468             202 aa            linear   VRT 09-MAR-2023
DEFINITION  josephin-1 [Cuculus canorus].
ACCESSION   XP_053909468
VERSION     XP_053909468.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053493.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..202
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..202
                     /product="josephin-1"
                     /calculated_mol_wt=23163
     Region          31..179
                     /region_name="Josephin"
                     /note="pfam02099"
                     /db_xref="CDD:460444"
     CDS             1..202
                     /gene="JOSD1"
                     /coded_by="XM_054053493.1:672..1280"
                     /db_xref="GeneID:104065890"
ORIGIN      
        1 mscvpwkgdk tksesaeppq qpplhiyhek qrrelcalha lnnvfqdsna ftretlqeif
       61 qrlspntmvt phkksmlgng nydvnvimaa lqtkgyeavw wdkrrdvnvi alsnvmgfim
      121 nlpsslcwgp lklplkrqhw icvrevggty ynldsklkvp ewiggeselr kflkhqlrgk
      181 ncelllvvpe eveahqswra dv
//
LOCUS       XP_009555122             377 aa            linear   VRT 09-MAR-2023
DEFINITION  3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase-like
            [Cuculus canorus].
ACCESSION   XP_009555122
VERSION     XP_009555122.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556827.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..377
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..377
                     /product="3 beta-hydroxysteroid dehydrogenase/Delta
                     5-->4-isomerase-like"
                     /calculated_mol_wt=42662
     Region          7..360
                     /region_name="3b-HSD_HSDB1_like_SDR_e"
                     /note="human 3beta-HSD (hydroxysteroid dehydrogenase) and
                     HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs;
                     cd09811"
                     /db_xref="CDD:187671"
     Site            order(12,14..17,39..41,85..87,103,126..128,158,162,
                     190..193)
                     /site_type="other"
                     /note="putative NAD(P) binding site [chemical binding]"
                     /db_xref="CDD:187671"
     Site            order(104,128,158,162)
                     /site_type="active"
                     /db_xref="CDD:187671"
     Site            order(128,158,192,205,216,221)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:187671"
     CDS             1..377
                     /gene="LOC104055667"
                     /coded_by="XM_009556827.2:227..1360"
                     /db_xref="GeneID:104055667"
ORIGIN      
        1 mslagvsclv tgaggflgqr ivqllleeee plaeirlldk tfsnetlrrf eklqgktevk
       61 ilegdirdvm flhracqgvs liihtasiid tlglvekqll wevnvtgtql llevcvrcnv
      121 qhfiytstie vtgpnwkgdp vfsgdedtvy vsvpkfpyaq tkrlaensvl kadgqvlkdg
      181 gtlmtcalrs myifgegcpf lqghldkcll nknvylrfsr kealvnpvyv gniawahvqa
      241 akalrvpqka enirgqfyyi sddtphmsya dlnyeltkdl gfaieprlpm pltvlyyfsl
      301 lleivsfllr pfvryipstn rhlvtllntp ftfsykkaqk dfgytprysw eaakqstgqw
      361 lasivpqrre ylrietv
//
LOCUS       XP_053909487             377 aa            linear   VRT 09-MAR-2023
DEFINITION  3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase-like
            [Cuculus canorus].
ACCESSION   XP_053909487
VERSION     XP_053909487.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053512.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..377
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..377
                     /product="3 beta-hydroxysteroid dehydrogenase/Delta
                     5-->4-isomerase-like"
                     /calculated_mol_wt=42662
     Region          7..360
                     /region_name="3b-HSD_HSDB1_like_SDR_e"
                     /note="human 3beta-HSD (hydroxysteroid dehydrogenase) and
                     HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs;
                     cd09811"
                     /db_xref="CDD:187671"
     Site            order(12,14..17,39..41,85..87,103,126..128,158,162,
                     190..193)
                     /site_type="other"
                     /note="putative NAD(P) binding site [chemical binding]"
                     /db_xref="CDD:187671"
     Site            order(104,128,158,162)
                     /site_type="active"
                     /db_xref="CDD:187671"
     Site            order(128,158,192,205,216,221)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:187671"
     CDS             1..377
                     /gene="LOC104055667"
                     /coded_by="XM_054053512.1:211..1344"
                     /db_xref="GeneID:104055667"
ORIGIN      
        1 mslagvsclv tgaggflgqr ivqllleeee plaeirlldk tfsnetlrrf eklqgktevk
       61 ilegdirdvm flhracqgvs liihtasiid tlglvekqll wevnvtgtql llevcvrcnv
      121 qhfiytstie vtgpnwkgdp vfsgdedtvy vsvpkfpyaq tkrlaensvl kadgqvlkdg
      181 gtlmtcalrs myifgegcpf lqghldkcll nknvylrfsr kealvnpvyv gniawahvqa
      241 akalrvpqka enirgqfyyi sddtphmsya dlnyeltkdl gfaieprlpm pltvlyyfsl
      301 lleivsfllr pfvryipstn rhlvtllntp ftfsykkaqk dfgytprysw eaakqstgqw
      361 lasivpqrre ylrietv
//
LOCUS       XP_053909493             377 aa            linear   VRT 09-MAR-2023
DEFINITION  3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase-like
            [Cuculus canorus].
ACCESSION   XP_053909493
VERSION     XP_053909493.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053518.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..377
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..377
                     /product="3 beta-hydroxysteroid dehydrogenase/Delta
                     5-->4-isomerase-like"
                     /calculated_mol_wt=42662
     Region          7..360
                     /region_name="3b-HSD_HSDB1_like_SDR_e"
                     /note="human 3beta-HSD (hydroxysteroid dehydrogenase) and
                     HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs;
                     cd09811"
                     /db_xref="CDD:187671"
     Site            order(12,14..17,39..41,85..87,103,126..128,158,162,
                     190..193)
                     /site_type="other"
                     /note="putative NAD(P) binding site [chemical binding]"
                     /db_xref="CDD:187671"
     Site            order(104,128,158,162)
                     /site_type="active"
                     /db_xref="CDD:187671"
     Site            order(128,158,192,205,216,221)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:187671"
     CDS             1..377
                     /gene="LOC104055667"
                     /coded_by="XM_054053518.1:171..1304"
                     /db_xref="GeneID:104055667"
ORIGIN      
        1 mslagvsclv tgaggflgqr ivqllleeee plaeirlldk tfsnetlrrf eklqgktevk
       61 ilegdirdvm flhracqgvs liihtasiid tlglvekqll wevnvtgtql llevcvrcnv
      121 qhfiytstie vtgpnwkgdp vfsgdedtvy vsvpkfpyaq tkrlaensvl kadgqvlkdg
      181 gtlmtcalrs myifgegcpf lqghldkcll nknvylrfsr kealvnpvyv gniawahvqa
      241 akalrvpqka enirgqfyyi sddtphmsya dlnyeltkdl gfaieprlpm pltvlyyfsl
      301 lleivsfllr pfvryipstn rhlvtllntp ftfsykkaqk dfgytprysw eaakqstgqw
      361 lasivpqrre ylrietv
//
LOCUS       XP_053909502             377 aa            linear   VRT 09-MAR-2023
DEFINITION  3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase-like
            [Cuculus canorus].
ACCESSION   XP_053909502
VERSION     XP_053909502.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053527.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..377
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..377
                     /product="3 beta-hydroxysteroid dehydrogenase/Delta
                     5-->4-isomerase-like"
                     /calculated_mol_wt=42662
     Region          7..360
                     /region_name="3b-HSD_HSDB1_like_SDR_e"
                     /note="human 3beta-HSD (hydroxysteroid dehydrogenase) and
                     HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs;
                     cd09811"
                     /db_xref="CDD:187671"
     Site            order(12,14..17,39..41,85..87,103,126..128,158,162,
                     190..193)
                     /site_type="other"
                     /note="putative NAD(P) binding site [chemical binding]"
                     /db_xref="CDD:187671"
     Site            order(104,128,158,162)
                     /site_type="active"
                     /db_xref="CDD:187671"
     Site            order(128,158,192,205,216,221)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:187671"
     CDS             1..377
                     /gene="LOC104055667"
                     /coded_by="XM_054053527.1:178..1311"
                     /db_xref="GeneID:104055667"
ORIGIN      
        1 mslagvsclv tgaggflgqr ivqllleeee plaeirlldk tfsnetlrrf eklqgktevk
       61 ilegdirdvm flhracqgvs liihtasiid tlglvekqll wevnvtgtql llevcvrcnv
      121 qhfiytstie vtgpnwkgdp vfsgdedtvy vsvpkfpyaq tkrlaensvl kadgqvlkdg
      181 gtlmtcalrs myifgegcpf lqghldkcll nknvylrfsr kealvnpvyv gniawahvqa
      241 akalrvpqka enirgqfyyi sddtphmsya dlnyeltkdl gfaieprlpm pltvlyyfsl
      301 lleivsfllr pfvryipstn rhlvtllntp ftfsykkaqk dfgytprysw eaakqstgqw
      361 lasivpqrre ylrietv
//
LOCUS       XP_053909509             377 aa            linear   VRT 09-MAR-2023
DEFINITION  3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase-like
            [Cuculus canorus].
ACCESSION   XP_053909509
VERSION     XP_053909509.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053534.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..377
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..377
                     /product="3 beta-hydroxysteroid dehydrogenase/Delta
                     5-->4-isomerase-like"
                     /calculated_mol_wt=42662
     Region          7..360
                     /region_name="3b-HSD_HSDB1_like_SDR_e"
                     /note="human 3beta-HSD (hydroxysteroid dehydrogenase) and
                     HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs;
                     cd09811"
                     /db_xref="CDD:187671"
     Site            order(12,14..17,39..41,85..87,103,126..128,158,162,
                     190..193)
                     /site_type="other"
                     /note="putative NAD(P) binding site [chemical binding]"
                     /db_xref="CDD:187671"
     Site            order(104,128,158,162)
                     /site_type="active"
                     /db_xref="CDD:187671"
     Site            order(128,158,192,205,216,221)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:187671"
     CDS             1..377
                     /gene="LOC104055667"
                     /coded_by="XM_054053534.1:95..1228"
                     /db_xref="GeneID:104055667"
ORIGIN      
        1 mslagvsclv tgaggflgqr ivqllleeee plaeirlldk tfsnetlrrf eklqgktevk
       61 ilegdirdvm flhracqgvs liihtasiid tlglvekqll wevnvtgtql llevcvrcnv
      121 qhfiytstie vtgpnwkgdp vfsgdedtvy vsvpkfpyaq tkrlaensvl kadgqvlkdg
      181 gtlmtcalrs myifgegcpf lqghldkcll nknvylrfsr kealvnpvyv gniawahvqa
      241 akalrvpqka enirgqfyyi sddtphmsya dlnyeltkdl gfaieprlpm pltvlyyfsl
      301 lleivsfllr pfvryipstn rhlvtllntp ftfsykkaqk dfgytprysw eaakqstgqw
      361 lasivpqrre ylrietv
//
LOCUS       XP_009568089             704 aa            linear   VRT 09-MAR-2023
DEFINITION  glycogen [starch] synthase, liver [Cuculus canorus].
ACCESSION   XP_009568089
VERSION     XP_009568089.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009569794.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..704
                     /product="glycogen [starch] synthase, liver"
                     /calculated_mol_wt=80960
     Region          27..616
                     /region_name="GT3_GSY2-like"
                     /note="glycogen synthase GSY2 and similar proteins;
                     cd03793"
                     /db_xref="CDD:340824"
     CDS             1..704
                     /gene="GYS2"
                     /coded_by="XM_009569794.2:697..2811"
                     /db_xref="GeneID:104067086"
ORIGIN      
        1 mplarslsmt slnglpqwed edlpvqdlll fevswevtnk vggiytviqt kakitadewg
       61 enyflvgpyf ehnvktqvet ceppnpavek amntmksqgc qvffgrwlie gspyvllfdi
      121 gsaawnldrw kgefwdvsni gipfhdrean davifgslta wflkelssqf ddkpniiahf
      181 hewqagvgli lsrsqklpva tiftthatll grylcaasid fynnldqfdi dkeagerqiy
      241 hrycmeraav hcahvfttvs qitaieaehm lkrnpdvvtp nglnikkfsa mhefqnlhsm
      301 ykariqefir ghfyghldfs lektlfffia gryefsnkga dmflealsrl nfllrvhktd
      361 itvvvffimp aktnnfnvet lkgqavrkql wdtaqsvkek fgkklynall kgeipdlnki
      421 ldrdditimk raifstqrhc lppvtthnmi ddgndpilnt irriglfnnr tdrvkvivhp
      481 eflsstspll pldyeefvrg chlgvfpsyy epwgytpaec tvmgipsvtt nlsgfgcfmq
      541 ehvadpaayg iyivdrrfrs pdescnqltq flygfcqqsr rqriiqrnrt erlsdlldwr
      601 ylgryymhar hlalsrtfpd kfemepsapp ktegfryprp ssvppspsvs qhssphqseg
      661 ededederyd edeeaerdrq nikspfslgv lpqgkkkqhg eyrn
//
LOCUS       XP_009566996              85 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin-fold modifier 1 [Cuculus canorus].
ACCESSION   XP_009566996
VERSION     XP_009566996.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568701.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..85
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..85
                     /product="ubiquitin-fold modifier 1"
                     /calculated_mol_wt=9025
     Region          4..78
                     /region_name="Ubl_UFM1"
                     /note="ubiquitin-like (Ubl) domain found in ubiquitin fold
                     modifier 1 (UFM1); cd01766"
                     /db_xref="CDD:340465"
     Site            order(19..24,28,31..32,35)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:340465"
     CDS             1..85
                     /gene="UFM1"
                     /coded_by="XM_009568701.2:94..351"
                     /db_xref="GeneID:104066130"
ORIGIN      
        1 mskvtfkvtl tsdprlpykv lsvpestpft avlkfaaeef kvpaatsaii tndgiginpa
       61 qtagnvflkh gsdlriiprd rvgrs
//
LOCUS       XP_009558834             294 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 178B isoform X1 [Cuculus canorus].
ACCESSION   XP_009558834
VERSION     XP_009558834.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560539.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..294
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..294
                     /product="transmembrane protein 178B isoform X1"
                     /calculated_mol_wt=33095
     Region          98..266
                     /region_name="PMP22_Claudin"
                     /note="PMP-22/EMP/MP20/Claudin family; cl21598"
                     /db_xref="CDD:473919"
     CDS             1..294
                     /gene="TMEM178B"
                     /coded_by="XM_009560539.2:1721..2605"
                     /db_xref="GeneID:104058947"
ORIGIN      
        1 maagrlllya glslalcalg mlavaicsdh wyetdarkhr ercksittkr ndpgfiynsn
       61 nnlplrasrs rldrwegkll larnrrqifa msavdecnrq ynstnmglwr kchrqgfdqe
      121 leeliakgai ercsyikyhy ssatipknlt ynitktirqd ewhalhlrrm tagfmgmava
      181 iilfgwiigv lgccwdrglm qyvagllflm ggtfciislc tcvaginfel sryprylygl
      241 pddishgygw smfcawgglg ltlisgffct lapsvqpvpr tncpksrpen gtvc
//
LOCUS       XP_053909585             237 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 178B isoform X2 [Cuculus canorus].
ACCESSION   XP_053909585
VERSION     XP_053909585.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053610.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..237
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..237
                     /product="transmembrane protein 178B isoform X2"
                     /calculated_mol_wt=27389
     CDS             1..237
                     /gene="TMEM178B"
                     /coded_by="XM_054053610.1:1725..2438"
                     /db_xref="GeneID:104058947"
ORIGIN      
        1 maagrlllya glslalcalg mlavaicsdh wyetdarkhr ercksittkr ndpgfiynsn
       61 nnlplrasrs rldrwegkll larnrrqifa msavdecnrq ynstnmglwr kchrqgfdqe
      121 leeliakgai ercsyikyhy ssatipknlt ynitktirqd ewhalhlrrm tagfmgmava
      181 iilfgwiigv lgccwdrglm qyvagllflm gereskktkq akmsykwiqq hqciwrt
//
LOCUS       XP_053909599             440 aa            linear   VRT 09-MAR-2023
DEFINITION  ras association domain-containing protein 9 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053909599
VERSION     XP_053909599.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053624.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..440
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..440
                     /product="ras association domain-containing protein 9
                     isoform X1"
                     /calculated_mol_wt=50627
     Region          28..120
                     /region_name="RA_RASSF9"
                     /note="Ras-associating (RA) domain of N-terminal
                     Ras-association domain family 9 (RASSF9); cd16133"
                     /db_xref="CDD:340550"
     CDS             1..440
                     /gene="RASSF9"
                     /coded_by="XM_054053624.1:707..2029"
                     /db_xref="GeneID:104058244"
ORIGIN      
        1 mapfgrnllk trhknrspnk dmasnereiv vwvcqeekiv cgltkhttca evvqalleeh
       61 qttfgekkvl fgkptdyciv ekwrgservl ppltkilrlw kawgeeqsnl hfvlvksdaf
      121 lsfplwktae akvvqnvekq wdlspanymk mlpidkqkki vrktfrklak lkqdsvqqer
      181 dnmetlihli isqdhtihqq vlrmkeldme iekceakfhl drvandgeny vqdsylminp
      241 seteqqgsrp ddqkeiheyl sgsegilqve erlkhhrqli eklcaeiere vrgictekng
      301 ddvhtegaan telenpnles vkyeleksmk dglrinsyls ciqkeltfrd sllqkkekey
      361 ellteefnll hvkdnieprl psneepskcs gissnsiavp dfvhrvtnld indtdsdtgi
      421 ssthsqdsei tsgdmvllst
//
LOCUS       XP_053909605             419 aa            linear   VRT 09-MAR-2023
DEFINITION  ras association domain-containing protein 9 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053909605
VERSION     XP_053909605.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053630.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..419
                     /product="ras association domain-containing protein 9
                     isoform X2"
                     /calculated_mol_wt=48164
     Region          7..99
                     /region_name="RA_RASSF9"
                     /note="Ras-associating (RA) domain of N-terminal
                     Ras-association domain family 9 (RASSF9); cd16133"
                     /db_xref="CDD:340550"
     CDS             1..419
                     /gene="RASSF9"
                     /coded_by="XM_054053630.1:510..1769"
                     /db_xref="GeneID:104058244"
ORIGIN      
        1 masnereivv wvcqeekivc gltkhttcae vvqalleehq ttfgekkvlf gkptdycive
       61 kwrgservlp pltkilrlwk awgeeqsnlh fvlvksdafl sfplwktaea kvvqnvekqw
      121 dlspanymkm lpidkqkkiv rktfrklakl kqdsvqqerd nmetlihlii sqdhtihqqv
      181 lrmkeldmei ekceakfhld rvandgenyv qdsylminps eteqqgsrpd dqkeiheyls
      241 gsegilqvee rlkhhrqlie klcaeierev rgictekngd dvhtegaant elenpnlesv
      301 kyeleksmkd glrinsylsc iqkeltfrds llqkkekeye llteefnllh vkdnieprlp
      361 sneepskcsg issnsiavpd fvhrvtnldi ndtdsdtgis sthsqdseit sgdmvllst
//
LOCUS       XP_053909606             419 aa            linear   VRT 09-MAR-2023
DEFINITION  ras association domain-containing protein 9 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053909606
VERSION     XP_053909606.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053631.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..419
                     /product="ras association domain-containing protein 9
                     isoform X2"
                     /calculated_mol_wt=48164
     Region          7..99
                     /region_name="RA_RASSF9"
                     /note="Ras-associating (RA) domain of N-terminal
                     Ras-association domain family 9 (RASSF9); cd16133"
                     /db_xref="CDD:340550"
     CDS             1..419
                     /gene="RASSF9"
                     /coded_by="XM_054053631.1:163..1422"
                     /db_xref="GeneID:104058244"
ORIGIN      
        1 masnereivv wvcqeekivc gltkhttcae vvqalleehq ttfgekkvlf gkptdycive
       61 kwrgservlp pltkilrlwk awgeeqsnlh fvlvksdafl sfplwktaea kvvqnvekqw
      121 dlspanymkm lpidkqkkiv rktfrklakl kqdsvqqerd nmetlihlii sqdhtihqqv
      181 lrmkeldmei ekceakfhld rvandgenyv qdsylminps eteqqgsrpd dqkeiheyls
      241 gsegilqvee rlkhhrqlie klcaeierev rgictekngd dvhtegaant elenpnlesv
      301 kyeleksmkd glrinsylsc iqkeltfrds llqkkekeye llteefnllh vkdnieprlp
      361 sneepskcsg issnsiavpd fvhrvtnldi ndtdsdtgis sthsqdseit sgdmvllst
//
LOCUS       XP_053909617             556 aa            linear   VRT 09-MAR-2023
DEFINITION  protein spire homolog 1 [Cuculus canorus].
ACCESSION   XP_053909617
VERSION     XP_053909617.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053642.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..556
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..556
                     /product="protein spire homolog 1"
                     /calculated_mol_wt=63279
     Region          <24..113
                     /region_name="KIND"
                     /note="Kinase non-catalytic C-lobe domain; pfam16474"
                     /db_xref="CDD:465129"
     Region          182..>203
                     /region_name="WH2"
                     /note="Wiskott-Aldrich Syndrome Homology (WASP) region 2
                     (WH2 motif), and similar proteins; cl41728"
                     /db_xref="CDD:425359"
     Site            order(183..184,186..188,190..192,198..201)
                     /site_type="other"
                     /note="actin-binding motif [polypeptide binding]"
                     /db_xref="CDD:409196"
     Region          419..453
                     /region_name="FYVE_SPIR"
                     /note="FYVE-related domain found in Spir proteins, Spire1
                     and Spire2; cd15748"
                     /db_xref="CDD:277287"
     CDS             1..556
                     /gene="LOC104055849"
                     /coded_by="XM_054053642.1:1..1671"
                     /db_xref="GeneID:104055849"
ORIGIN      
        1 mtvqllfsls alfslsdagd iqqsedklle ylgvviyeal dwginsqver elsdplerll
       61 cfmlklddea tkpavtlqdv ikacedhssr pseatshyem tcrnlfteyi elqeivtiiq
      121 tskerlrkmd vedlvenplq kkekhwgapw pslmrelqng vrlrkaterl rshvppkevi
      181 rspyellldd iqhkrytlrk viieqnhknp gndvttpkhl kpvlerkmke capwdeqlmv
      241 eikqpeklqs vaarengsrp eetlvrtrva lkspgdsfsa lqdastkfin tttqqlgqgv
      301 qettlklpss trlasarpsv vscngtglas nctcppmsap tledikpngf lnagqqqqpp
      361 crgrskslep glqskeldcp fpnkwpspti aeligtryam vvlegqgffh gssdivfpra
      421 kicfschkqm flkwpyscyl cssivccdcc mkvsmpfrtc vhlplhflkl lrlsreedps
      481 iqeqkilell reiehrehfg vpvileprcl aqplcyyagt mghwltvdic mqceqyllnm
      541 asrqqqsirl rriswp
//
LOCUS       XP_009559171             666 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-binding cassette sub-family G member 1 [Cuculus canorus].
ACCESSION   XP_009559171
VERSION     XP_009559171.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560876.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009559171.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..666
                     /product="ATP-binding cassette sub-family G member 1"
                     /calculated_mol_wt=74464
     Region          60..666
                     /region_name="3a01204"
                     /note="The Eye Pigment Precursor Transporter (EPP) Family
                     protein; TIGR00955"
                     /db_xref="CDD:273361"
     CDS             1..666
                     /gene="ABCG1"
                     /coded_by="XM_009560876.2:44..2044"
                     /db_xref="GeneID:104059235"
ORIGIN      
        1 maclmaafsl gtalngsnst ctmaepksvc vsvdevvsng tdnqdirlmn ghlrkvdctl
       61 teahrfsylp rrpavniefk dlsysiqegp wwrkkgyktl lkgisgkfss gelvaimgps
      121 gagkstlmni lagyretgmk geilingqpr dlrsfrkvsc yimqddmllp hltvqeammv
      181 sahlklqekd egrremvkei ltalglltca ntrtgslsgg qrkrlaiale lvnnppvmff
      241 deptsgldsa scfqvvslmk alaqggrsii ctihqpsakl felfdqlyvl sqgqciyrgk
      301 vlnlvpylrd lglncptyhn padfvmevas geygdqngrl vravreriyd tdykrdvgse
      361 nelnpflwhr pseedssste gchsfsascl tqfcilfkrt fltimrdsvl thlritshig
      421 iglligllyl gigneakkvl snsgflffsm lflmfaalmp tvltfplemg vflrehlnyw
      481 yslkayylak tmadvpfqim fpvaycsivy wmtsqpsdal rfvlfaalgt mtslvaqslg
      541 lligaastsl qvatfvgpvt aipvllfsgf fvsfdtipty lqwmsyisyv rygfegvils
      601 iygldredlh cdkddtchfq kseailreld venaklyldf ivlgiffisl rliayfvlry
      661 kiraer
//
LOCUS       XP_053909640             449 aa            linear   VRT 09-MAR-2023
DEFINITION  N-acylneuraminate cytidylyltransferase isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053909640
VERSION     XP_053909640.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053665.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..449
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..449
                     /product="N-acylneuraminate cytidylyltransferase isoform
                     X1"
                     /calculated_mol_wt=49602
     Region          11..247
                     /region_name="CMP-NeuAc_Synthase"
                     /note="CMP-NeuAc_Synthase activates N-acetylneuraminic
                     acid by adding CMP moiety; cd02513"
                     /db_xref="CDD:133006"
     Site            order(17..19,23,29,99,103,110,131,133,201,206,237)
                     /site_type="active"
                     /note="ligand binding site [active]"
                     /db_xref="CDD:133006"
     Site            order(32,34..35,158,162..163,198..201,206,223,225,237,
                     240..241,244,247)
                     /site_type="active"
                     /note="tetramer interface [active]"
                     /db_xref="CDD:133006"
     Region          263..406
                     /region_name="Haloacid Dehalogenase-like Hydrolases"
                     /note="The haloacid dehalogenase (HAD) superfamily
                     includes carbon and phosphorus hydrolases such as
                     2-haloalkonoate dehalogenase, epoxide hydrolase,
                     phosphoserine phosphatase, phosphomannomutase,
                     phosphoglycolate phosphatase, P-type ATPase, among others.
                     These...; cl21460"
                     /db_xref="CDD:473868"
     Site            order(269..273,313..314,337,359..360,363..364)
                     /site_type="active"
                     /db_xref="CDD:319763"
     CDS             1..449
                     /gene="CMAS"
                     /coded_by="XM_054053665.1:51..1400"
                     /db_xref="GeneID:104059292"
ORIGIN      
        1 meagegqpka hlaalvlarg gskgiplkni kllagvplig wvlraatdag vfhrcaslhp
       61 hpsepapaap lggssiwvst dhdeiekvak qfgaqvhrrs pevsqdssts leaireflnh
      121 hhevdivgni qatspclhps dlikvadliq kegfdsvfsv vrrhqfrwse vkkgedkmte
      181 pqnlnpakry rrqdwpgely engsfyfakr hliekgylqg gkmayyemra ehsvdididi
      241 dwpiaeqrvl sfgyfgkepl kevkllvcsi dgcltngriy vtedqkemvs ydyrdivgin
      301 llkkrgievr liserhcskt lsamklgcia kisatnklqv ledwkkdmgl swkevaylgn
      361 eesdveclkk agmsgvpada ctvaqkaagy ickssggcga vrefaehifl llekvnsark
      421 qmetvssage eaggndnsrr gstelikke
//
LOCUS       XP_053909649             428 aa            linear   VRT 09-MAR-2023
DEFINITION  N-acylneuraminate cytidylyltransferase isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053909649
VERSION     XP_053909649.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053674.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..428
                     /product="N-acylneuraminate cytidylyltransferase isoform
                     X2"
                     /calculated_mol_wt=47568
     Region          11..226
                     /region_name="CMP-NeuAc_Synthase"
                     /note="CMP-NeuAc_Synthase activates N-acetylneuraminic
                     acid by adding CMP moiety; cd02513"
                     /db_xref="CDD:133006"
     Site            order(17..19,23,29,78,82,89,110,112,180,185,216)
                     /site_type="active"
                     /note="ligand binding site [active]"
                     /db_xref="CDD:133006"
     Site            order(32,34..35,137,141..142,177..180,185,202,204,216,
                     219..220,223,226)
                     /site_type="active"
                     /note="tetramer interface [active]"
                     /db_xref="CDD:133006"
     Region          242..385
                     /region_name="Haloacid Dehalogenase-like Hydrolases"
                     /note="The haloacid dehalogenase (HAD) superfamily
                     includes carbon and phosphorus hydrolases such as
                     2-haloalkonoate dehalogenase, epoxide hydrolase,
                     phosphoserine phosphatase, phosphomannomutase,
                     phosphoglycolate phosphatase, P-type ATPase, among others.
                     These...; cl21460"
                     /db_xref="CDD:473868"
     Site            order(248..252,292..293,316,338..339,342..343)
                     /site_type="active"
                     /db_xref="CDD:319763"
     CDS             1..428
                     /gene="CMAS"
                     /coded_by="XM_054053674.1:51..1337"
                     /db_xref="GeneID:104059292"
ORIGIN      
        1 meagegqpka hlaalvlarg gskgiplkni kllagvplig wvlraatdag vfhsiwvstd
       61 hdeiekvakq fgaqvhrrsp evsqdsstsl eaireflnhh hevdivgniq atspclhpsd
      121 likvadliqk egfdsvfsvv rrhqfrwsev kkgedkmtep qnlnpakryr rqdwpgelye
      181 ngsfyfakrh liekgylqgg kmayyemrae hsvdididid wpiaeqrvls fgyfgkeplk
      241 evkllvcsid gcltngriyv tedqkemvsy dyrdivginl lkkrgievrl iserhcsktl
      301 samklgciak isatnklqvl edwkkdmgls wkevaylgne esdveclkka gmsgvpadac
      361 tvaqkaagyi ckssggcgav refaehifll lekvnsarkq metvssagee aggndnsrrg
      421 stelikke
//
LOCUS       XP_009564689            1242 aa            linear   VRT 09-MAR-2023
DEFINITION  metabotropic glutamate receptor 5 isoform X1 [Cuculus canorus].
ACCESSION   XP_009564689
VERSION     XP_009564689.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566394.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1242
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1242
                     /product="metabotropic glutamate receptor 5 isoform X1"
                     /calculated_mol_wt=137967
     Region          32..503
                     /region_name="PBP1_mGluR_groupI"
                     /note="ligand binding domain of the group I metabotropic
                     glutamate receptor; cd06374"
                     /db_xref="CDD:380597"
     Site            order(70,158,179..181,229,311,402)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:380597"
     Site            order(109,112..113,116,120,166..167,169..171,192,235,238,
                     253)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:380597"
     Region          514..564
                     /region_name="NCD3G"
                     /note="Nine Cysteines Domain of family 3 GPCR; pfam07562"
                     /db_xref="CDD:462210"
     Region          584..833
                     /region_name="7tmC_mGluR5"
                     /note="metabotropic glutamate receptor 5 in group 1,
                     member of the class C family of seven-transmembrane G
                     protein-coupled receptors; cd15450"
                     /db_xref="CDD:320566"
     Region          584..609
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320566"
     Site            order(587,590..591,594..595,597..598,632,636,639..640,648,
                     652)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:320566"
     Region          621..642
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320566"
     Site            order(641,653..654,657..658,661,741,746,749..750,753,787,
                     790..791,794,798,804..805,808,811,815)
                     /site_type="other"
                     /note="putative allosteric modulator binding site
                     [chemical binding]"
                     /db_xref="CDD:320566"
     Region          651..675
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320566"
     Region          699..719
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320566"
     Region          742..768
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320566"
     Region          776..799
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320566"
     Region          802..827
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320566"
     Region          1192..1242
                     /region_name="GluR_Homer-bdg"
                     /note="Homer-binding domain of metabotropic glutamate
                     receptor; pfam10606"
                     /db_xref="CDD:431390"
     CDS             1..1242
                     /gene="GRM5"
                     /coded_by="XM_009566394.2:403..4131"
                     /db_xref="GeneID:104064101"
ORIGIN      
        1 milllfltil llkedvcgnf gllvsaqane rrvvahmpgd iiigalfsvh hqptvdkvhe
       61 rkcgevreqy giqrveamlh tldrinldpt llpnitlgce irdscwhsav aleqsiefir
      121 dslisseeee gmvrcvdgss ssfhskkpiv gvigpgsssv aiqvqnllql fnipqiaysa
      181 tsmdlsdktl fkyfmrvvps daqqaramvd ivkrynwtyv savhtegnyg esgmeafkdm
      241 aakegiciah sykiysnage qsfdkllrkl rshlpkarvv acfcegmtvr gllmamrrlg
      301 lageflllgs dgwadrydvt egyqreavgg itiklqspdv kwfddyylel rpetnhrnpw
      361 fqefwqhrfq crlegfpqen pkynktctsq mtlrtqhvqd skmgfvinai ysmayglhnm
      421 qmslcpgyvg lcdamkpidg rklleslmkt nftgvsgdmi lfdengdspg ryeimnfkkm
      481 gkdyfdyinv gswdngelkm dddeiwsekn niirsvcsep cekgqikvir kgevsccwtc
      541 tpckeneyvy deytckacql gswpnddltg cdlipvqylr wgdpepiaav vfaclgllat
      601 lfvtaifimy rdtpvvksss relcyiilag iclgylctfc liakpqqiyc ylqrigigls
      661 pamsysalvt ktnriarila gskkkictkk prfmsacaql viafiliciq lgiivalfim
      721 eppdimhdyp sirevylicn ttnlgvvtpl gyngllilsc tfyafktrnv panfneakyi
      781 aftmyttcii wlafvpiyfg snykiitmcf svslsatval gcmfvpkvyi ilakpernvr
      841 safttstvvr mhvgdgksss aasrssslvn lwkrrgssge tlrykgrrla phkseiecft
      901 pkgsmgnggr atmtseesvc ipdcnrsess reekkvpvke daltvkktgn cvslivpqqd
      961 cqlqdllkhs ngksvswaqn ekssrgahlw qrlsihinkk enpnqtavik pfskstdssr
     1021 hsssatfpes saktlydvse aeeqypaqyr pqtpspistl shrtasvsrt eddaptfqse
     1081 ppqrssssqg slmeqissvv trftanisel nsmmlstttp gtmvatplcs sylipreiql
     1141 pttmttlaei qplpaievng asqsarkpsn gsvkegtset psakqdleel valtppspfr
     1201 dsidsgsasp sspvsesalc ipsspkydtl lirdltqsss sl
//
LOCUS       XP_053909670            1242 aa            linear   VRT 09-MAR-2023
DEFINITION  metabotropic glutamate receptor 5 isoform X1 [Cuculus canorus].
ACCESSION   XP_053909670
VERSION     XP_053909670.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053695.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1242
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1242
                     /product="metabotropic glutamate receptor 5 isoform X1"
                     /calculated_mol_wt=137967
     Region          32..503
                     /region_name="PBP1_mGluR_groupI"
                     /note="ligand binding domain of the group I metabotropic
                     glutamate receptor; cd06374"
                     /db_xref="CDD:380597"
     Site            order(70,158,179..181,229,311,402)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:380597"
     Site            order(109,112..113,116,120,166..167,169..171,192,235,238,
                     253)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:380597"
     Region          514..564
                     /region_name="NCD3G"
                     /note="Nine Cysteines Domain of family 3 GPCR; pfam07562"
                     /db_xref="CDD:462210"
     Region          584..833
                     /region_name="7tmC_mGluR5"
                     /note="metabotropic glutamate receptor 5 in group 1,
                     member of the class C family of seven-transmembrane G
                     protein-coupled receptors; cd15450"
                     /db_xref="CDD:320566"
     Region          584..609
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320566"
     Site            order(587,590..591,594..595,597..598,632,636,639..640,648,
                     652)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:320566"
     Region          621..642
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320566"
     Site            order(641,653..654,657..658,661,741,746,749..750,753,787,
                     790..791,794,798,804..805,808,811,815)
                     /site_type="other"
                     /note="putative allosteric modulator binding site
                     [chemical binding]"
                     /db_xref="CDD:320566"
     Region          651..675
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320566"
     Region          699..719
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320566"
     Region          742..768
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320566"
     Region          776..799
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320566"
     Region          802..827
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320566"
     Region          1192..1242
                     /region_name="GluR_Homer-bdg"
                     /note="Homer-binding domain of metabotropic glutamate
                     receptor; pfam10606"
                     /db_xref="CDD:431390"
     CDS             1..1242
                     /gene="GRM5"
                     /coded_by="XM_054053695.1:462..4190"
                     /db_xref="GeneID:104064101"
ORIGIN      
        1 milllfltil llkedvcgnf gllvsaqane rrvvahmpgd iiigalfsvh hqptvdkvhe
       61 rkcgevreqy giqrveamlh tldrinldpt llpnitlgce irdscwhsav aleqsiefir
      121 dslisseeee gmvrcvdgss ssfhskkpiv gvigpgsssv aiqvqnllql fnipqiaysa
      181 tsmdlsdktl fkyfmrvvps daqqaramvd ivkrynwtyv savhtegnyg esgmeafkdm
      241 aakegiciah sykiysnage qsfdkllrkl rshlpkarvv acfcegmtvr gllmamrrlg
      301 lageflllgs dgwadrydvt egyqreavgg itiklqspdv kwfddyylel rpetnhrnpw
      361 fqefwqhrfq crlegfpqen pkynktctsq mtlrtqhvqd skmgfvinai ysmayglhnm
      421 qmslcpgyvg lcdamkpidg rklleslmkt nftgvsgdmi lfdengdspg ryeimnfkkm
      481 gkdyfdyinv gswdngelkm dddeiwsekn niirsvcsep cekgqikvir kgevsccwtc
      541 tpckeneyvy deytckacql gswpnddltg cdlipvqylr wgdpepiaav vfaclgllat
      601 lfvtaifimy rdtpvvksss relcyiilag iclgylctfc liakpqqiyc ylqrigigls
      661 pamsysalvt ktnriarila gskkkictkk prfmsacaql viafiliciq lgiivalfim
      721 eppdimhdyp sirevylicn ttnlgvvtpl gyngllilsc tfyafktrnv panfneakyi
      781 aftmyttcii wlafvpiyfg snykiitmcf svslsatval gcmfvpkvyi ilakpernvr
      841 safttstvvr mhvgdgksss aasrssslvn lwkrrgssge tlrykgrrla phkseiecft
      901 pkgsmgnggr atmtseesvc ipdcnrsess reekkvpvke daltvkktgn cvslivpqqd
      961 cqlqdllkhs ngksvswaqn ekssrgahlw qrlsihinkk enpnqtavik pfskstdssr
     1021 hsssatfpes saktlydvse aeeqypaqyr pqtpspistl shrtasvsrt eddaptfqse
     1081 ppqrssssqg slmeqissvv trftanisel nsmmlstttp gtmvatplcs sylipreiql
     1141 pttmttlaei qplpaievng asqsarkpsn gsvkegtset psakqdleel valtppspfr
     1201 dsidsgsasp sspvsesalc ipsspkydtl lirdltqsss sl
//
LOCUS       XP_053909679            1188 aa            linear   VRT 09-MAR-2023
DEFINITION  metabotropic glutamate receptor 5 isoform X2 [Cuculus canorus].
ACCESSION   XP_053909679
VERSION     XP_053909679.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053704.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1188
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1188
                     /product="metabotropic glutamate receptor 5 isoform X2"
                     /calculated_mol_wt=131916
     Region          32..503
                     /region_name="PBP1_mGluR_groupI"
                     /note="ligand binding domain of the group I metabotropic
                     glutamate receptor; cd06374"
                     /db_xref="CDD:380597"
     Site            order(70,158,179..181,229,311,402)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:380597"
     Site            order(109,112..113,116,120,166..167,169..171,192,235,238,
                     253)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:380597"
     Region          514..564
                     /region_name="NCD3G"
                     /note="Nine Cysteines Domain of family 3 GPCR; pfam07562"
                     /db_xref="CDD:462210"
     Region          584..833
                     /region_name="7tmC_mGluR5"
                     /note="metabotropic glutamate receptor 5 in group 1,
                     member of the class C family of seven-transmembrane G
                     protein-coupled receptors; cd15450"
                     /db_xref="CDD:320566"
     Region          584..609
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320566"
     Site            order(587,590..591,594..595,597..598,632,636,639..640,648,
                     652)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:320566"
     Region          621..642
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320566"
     Site            order(641,653..654,657..658,661,741,746,749..750,753,787,
                     790..791,794,798,804..805,808,811,815)
                     /site_type="other"
                     /note="putative allosteric modulator binding site
                     [chemical binding]"
                     /db_xref="CDD:320566"
     Region          651..675
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320566"
     Region          699..719
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320566"
     Region          742..768
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320566"
     Region          776..799
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320566"
     Region          802..827
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320566"
     Region          1138..1188
                     /region_name="GluR_Homer-bdg"
                     /note="Homer-binding domain of metabotropic glutamate
                     receptor; pfam10606"
                     /db_xref="CDD:431390"
     CDS             1..1188
                     /gene="GRM5"
                     /coded_by="XM_054053704.1:568..4134"
                     /db_xref="GeneID:104064101"
ORIGIN      
        1 milllfltil llkedvcgnf gllvsaqane rrvvahmpgd iiigalfsvh hqptvdkvhe
       61 rkcgevreqy giqrveamlh tldrinldpt llpnitlgce irdscwhsav aleqsiefir
      121 dslisseeee gmvrcvdgss ssfhskkpiv gvigpgsssv aiqvqnllql fnipqiaysa
      181 tsmdlsdktl fkyfmrvvps daqqaramvd ivkrynwtyv savhtegnyg esgmeafkdm
      241 aakegiciah sykiysnage qsfdkllrkl rshlpkarvv acfcegmtvr gllmamrrlg
      301 lageflllgs dgwadrydvt egyqreavgg itiklqspdv kwfddyylel rpetnhrnpw
      361 fqefwqhrfq crlegfpqen pkynktctsq mtlrtqhvqd skmgfvinai ysmayglhnm
      421 qmslcpgyvg lcdamkpidg rklleslmkt nftgvsgdmi lfdengdspg ryeimnfkkm
      481 gkdyfdyinv gswdngelkm dddeiwsekn niirsvcsep cekgqikvir kgevsccwtc
      541 tpckeneyvy deytckacql gswpnddltg cdlipvqylr wgdpepiaav vfaclgllat
      601 lfvtaifimy rdtpvvksss relcyiilag iclgylctfc liakpqqiyc ylqrigigls
      661 pamsysalvt ktnriarila gskkkictkk prfmsacaql viafiliciq lgiivalfim
      721 eppdimhdyp sirevylicn ttnlgvvtpl gyngllilsc tfyafktrnv panfneakyi
      781 aftmyttcii wlafvpiyfg snykiitmcf svslsatval gcmfvpkvyi ilakpernvr
      841 safttstvvr mhvgdgksss aasrssslvn lwkrrgssge tlrykgrrla phkseiecft
      901 pkgsmgnggr atmtssngks vswaqnekss rgahlwqrls ihinkkenpn qtavikpfsk
      961 stdssrhsss atfpessakt lydvseaeeq ypaqyrpqtp spistlshrt asvsrtedda
     1021 ptfqseppqr ssssqgslme qissvvtrft aniselnsmm lstttpgtmv atplcssyli
     1081 preiqlpttm ttlaeiqplp aievngasqs arkpsngsvk egtsetpsak qdleelvalt
     1141 ppspfrdsid sgsaspsspv sesalcipss pkydtllird ltqssssl
//
LOCUS       XP_053909689            1156 aa            linear   VRT 09-MAR-2023
DEFINITION  metabotropic glutamate receptor 5 isoform X3 [Cuculus canorus].
ACCESSION   XP_053909689
VERSION     XP_053909689.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053714.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1156
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1156
                     /product="metabotropic glutamate receptor 5 isoform X3"
                     /calculated_mol_wt=128396
     Region          32..503
                     /region_name="PBP1_mGluR_groupI"
                     /note="ligand binding domain of the group I metabotropic
                     glutamate receptor; cd06374"
                     /db_xref="CDD:380597"
     Site            order(70,158,179..181,229,311,402)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:380597"
     Site            order(109,112..113,116,120,166..167,169..171,192,235,238,
                     253)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:380597"
     Region          514..564
                     /region_name="NCD3G"
                     /note="Nine Cysteines Domain of family 3 GPCR; pfam07562"
                     /db_xref="CDD:462210"
     Region          584..833
                     /region_name="7tmC_mGluR5"
                     /note="metabotropic glutamate receptor 5 in group 1,
                     member of the class C family of seven-transmembrane G
                     protein-coupled receptors; cd15450"
                     /db_xref="CDD:320566"
     Region          584..609
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320566"
     Site            order(587,590..591,594..595,597..598,632,636,639..640,648,
                     652)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:320566"
     Region          621..642
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320566"
     Site            order(641,653..654,657..658,661,741,746,749..750,753,787,
                     790..791,794,798,804..805,808,811,815)
                     /site_type="other"
                     /note="putative allosteric modulator binding site
                     [chemical binding]"
                     /db_xref="CDD:320566"
     Region          651..675
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320566"
     Region          699..719
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320566"
     Region          742..768
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320566"
     Region          776..799
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320566"
     Region          802..827
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320566"
     Region          1106..1156
                     /region_name="GluR_Homer-bdg"
                     /note="Homer-binding domain of metabotropic glutamate
                     receptor; pfam10606"
                     /db_xref="CDD:431390"
     CDS             1..1156
                     /gene="GRM5"
                     /coded_by="XM_054053714.1:568..4038"
                     /db_xref="GeneID:104064101"
ORIGIN      
        1 milllfltil llkedvcgnf gllvsaqane rrvvahmpgd iiigalfsvh hqptvdkvhe
       61 rkcgevreqy giqrveamlh tldrinldpt llpnitlgce irdscwhsav aleqsiefir
      121 dslisseeee gmvrcvdgss ssfhskkpiv gvigpgsssv aiqvqnllql fnipqiaysa
      181 tsmdlsdktl fkyfmrvvps daqqaramvd ivkrynwtyv savhtegnyg esgmeafkdm
      241 aakegiciah sykiysnage qsfdkllrkl rshlpkarvv acfcegmtvr gllmamrrlg
      301 lageflllgs dgwadrydvt egyqreavgg itiklqspdv kwfddyylel rpetnhrnpw
      361 fqefwqhrfq crlegfpqen pkynktctsq mtlrtqhvqd skmgfvinai ysmayglhnm
      421 qmslcpgyvg lcdamkpidg rklleslmkt nftgvsgdmi lfdengdspg ryeimnfkkm
      481 gkdyfdyinv gswdngelkm dddeiwsekn niirsvcsep cekgqikvir kgevsccwtc
      541 tpckeneyvy deytckacql gswpnddltg cdlipvqylr wgdpepiaav vfaclgllat
      601 lfvtaifimy rdtpvvksss relcyiilag iclgylctfc liakpqqiyc ylqrigigls
      661 pamsysalvt ktnriarila gskkkictkk prfmsacaql viafiliciq lgiivalfim
      721 eppdimhdyp sirevylicn ttnlgvvtpl gyngllilsc tfyafktrnv panfneakyi
      781 aftmyttcii wlafvpiyfg snykiitmcf svslsatval gcmfvpkvyi ilakpernvr
      841 safttstvvr mhvgdgksss aasrssslvn lwkrrgssge tlssngksvs waqnekssrg
      901 ahlwqrlsih inkkenpnqt avikpfskst dssrhsssat fpessaktly dvseaeeqyp
      961 aqyrpqtpsp istlshrtas vsrteddapt fqseppqrss ssqgslmeqi ssvvtrftan
     1021 iselnsmmls tttpgtmvat plcssylipr eiqlpttmtt laeiqplpai evngasqsar
     1081 kpsngsvkeg tsetpsakqd leelvaltpp spfrdsidsg saspsspvse salcipsspk
     1141 ydtllirdlt qssssl
//
LOCUS       XP_053909701             909 aa            linear   VRT 09-MAR-2023
DEFINITION  metabotropic glutamate receptor 8 isoform X1 [Cuculus canorus].
ACCESSION   XP_053909701
VERSION     XP_053909701.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053726.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..909
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..909
                     /product="metabotropic glutamate receptor 8 isoform X1"
                     /calculated_mol_wt=101886
     Region          40..504
                     /region_name="PBP1_mGluR_groupIII"
                     /note="ligand-binding domain of the group III metabotropic
                     glutamate receptor; cd06376"
                     /db_xref="CDD:380599"
     Site            order(53,68,71,154,156,226..227)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:380599"
     Site            order(110,113,161,164,187,252)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:380599"
     Region          512..562
                     /region_name="NCD3G"
                     /note="Nine Cysteines Domain of family 3 GPCR; pfam07562"
                     /db_xref="CDD:462210"
     Region          582..892
                     /region_name="7tmC_mGluR8"
                     /note="metabotropic glutamate receptor 8 in group 3,
                     member of the class C family of seven-transmembrane G
                     protein-coupled receptors; cd15454"
                     /db_xref="CDD:320570"
     Region          582..607
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320570"
     Site            order(585,588..589,592..593,595..596,630,634,637..638,646,
                     650)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:320570"
     Region          619..640
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320570"
     Site            order(639,651..652,655..656,659,744,749,752..753,756,790,
                     793..794,797,801,814..815,818,821,825)
                     /site_type="other"
                     /note="putative allosteric modulator binding site
                     [chemical binding]"
                     /db_xref="CDD:320570"
     Region          649..673
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320570"
     Region          695..715
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320570"
     Region          745..771
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320570"
     Region          779..802
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320570"
     Region          812..837
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320570"
     CDS             1..909
                     /gene="GRM8"
                     /coded_by="XM_054053726.1:827..3556"
                     /db_xref="GeneID:104055283"
ORIGIN      
        1 mvyegkrlvs yhcfflltak fywiltlmqr thgqeyahsi rldgdiilgg lfpvhakgdr
       61 gvpcgelkke kgihrleaml yaidqinkdp dlltnitlgv rildtcsrdt yaleqsltfv
      121 qaliekdgsd vkcangdppi ftkpdkisgv igaaassvsi mvanilrlfk ipqisyasta
      181 pelsdntryd ffsrvvppds yqaqamvdiv talgwnyvst lasegnyges gveaftqisr
      241 eiggvciaqs lkipreprpg efekiikrll etpnaravim faneddirri leaakkanqs
      301 ghflwigsds wgskispvqq qeeiaegavt ilpkrtsidg fdryfrsrtl annrrnvwfa
      361 efweenfgck lgshgkrnsn ikkctgleri ardsayeqeg kvqfvidavy smayalhnmh
      421 kdlcpgyigl cprmstidgk ellsyiravn fngsagtpvi fnengdapgr ydifqyqitn
      481 ksteykiigq wtnqlhlnve dmqwanreht hpasvcslpc kagerkktvk gvpccwhcer
      541 cegyhyqvde fncelcpink rpnanrtdcq lipiiklewh spwaivpvfi ailgiiattf
      601 vivtfvrynd tpivrasgre lsyvlltgif lcysitflmi aspdtvvcsf rriflglgmc
      661 fsyaalltkt nrihrifeqg kksvtapkfi spasqlvitf slismqligv fiwfaidpph
      721 tivdygeqrt ldpenargvl kcdisdlsli cslgysillm vtctvyaikt rgvpetfnea
      781 kpigftmytt ciiwlafipi ffgtaqsaek myiqtttltv smslsasvsl gmlympkvyi
      841 iifhpeqnvq krkrsfkavv taatmqsklt qkgndrpnge vktelcesle tntsstktty
      901 vsysnqtnn
//
LOCUS       XP_053909712             909 aa            linear   VRT 09-MAR-2023
DEFINITION  metabotropic glutamate receptor 8 isoform X1 [Cuculus canorus].
ACCESSION   XP_053909712
VERSION     XP_053909712.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053737.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..909
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..909
                     /product="metabotropic glutamate receptor 8 isoform X1"
                     /calculated_mol_wt=101886
     Region          40..504
                     /region_name="PBP1_mGluR_groupIII"
                     /note="ligand-binding domain of the group III metabotropic
                     glutamate receptor; cd06376"
                     /db_xref="CDD:380599"
     Site            order(53,68,71,154,156,226..227)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:380599"
     Site            order(110,113,161,164,187,252)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:380599"
     Region          512..562
                     /region_name="NCD3G"
                     /note="Nine Cysteines Domain of family 3 GPCR; pfam07562"
                     /db_xref="CDD:462210"
     Region          582..892
                     /region_name="7tmC_mGluR8"
                     /note="metabotropic glutamate receptor 8 in group 3,
                     member of the class C family of seven-transmembrane G
                     protein-coupled receptors; cd15454"
                     /db_xref="CDD:320570"
     Region          582..607
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320570"
     Site            order(585,588..589,592..593,595..596,630,634,637..638,646,
                     650)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:320570"
     Region          619..640
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320570"
     Site            order(639,651..652,655..656,659,744,749,752..753,756,790,
                     793..794,797,801,814..815,818,821,825)
                     /site_type="other"
                     /note="putative allosteric modulator binding site
                     [chemical binding]"
                     /db_xref="CDD:320570"
     Region          649..673
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320570"
     Region          695..715
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320570"
     Region          745..771
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320570"
     Region          779..802
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320570"
     Region          812..837
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320570"
     CDS             1..909
                     /gene="GRM8"
                     /coded_by="XM_054053737.1:562..3291"
                     /db_xref="GeneID:104055283"
ORIGIN      
        1 mvyegkrlvs yhcfflltak fywiltlmqr thgqeyahsi rldgdiilgg lfpvhakgdr
       61 gvpcgelkke kgihrleaml yaidqinkdp dlltnitlgv rildtcsrdt yaleqsltfv
      121 qaliekdgsd vkcangdppi ftkpdkisgv igaaassvsi mvanilrlfk ipqisyasta
      181 pelsdntryd ffsrvvppds yqaqamvdiv talgwnyvst lasegnyges gveaftqisr
      241 eiggvciaqs lkipreprpg efekiikrll etpnaravim faneddirri leaakkanqs
      301 ghflwigsds wgskispvqq qeeiaegavt ilpkrtsidg fdryfrsrtl annrrnvwfa
      361 efweenfgck lgshgkrnsn ikkctgleri ardsayeqeg kvqfvidavy smayalhnmh
      421 kdlcpgyigl cprmstidgk ellsyiravn fngsagtpvi fnengdapgr ydifqyqitn
      481 ksteykiigq wtnqlhlnve dmqwanreht hpasvcslpc kagerkktvk gvpccwhcer
      541 cegyhyqvde fncelcpink rpnanrtdcq lipiiklewh spwaivpvfi ailgiiattf
      601 vivtfvrynd tpivrasgre lsyvlltgif lcysitflmi aspdtvvcsf rriflglgmc
      661 fsyaalltkt nrihrifeqg kksvtapkfi spasqlvitf slismqligv fiwfaidpph
      721 tivdygeqrt ldpenargvl kcdisdlsli cslgysillm vtctvyaikt rgvpetfnea
      781 kpigftmytt ciiwlafipi ffgtaqsaek myiqtttltv smslsasvsl gmlympkvyi
      841 iifhpeqnvq krkrsfkavv taatmqsklt qkgndrpnge vktelcesle tntsstktty
      901 vsysnqtnn
//
LOCUS       XP_053909721             909 aa            linear   VRT 09-MAR-2023
DEFINITION  metabotropic glutamate receptor 8 isoform X1 [Cuculus canorus].
ACCESSION   XP_053909721
VERSION     XP_053909721.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053746.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..909
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..909
                     /product="metabotropic glutamate receptor 8 isoform X1"
                     /calculated_mol_wt=101886
     Region          40..504
                     /region_name="PBP1_mGluR_groupIII"
                     /note="ligand-binding domain of the group III metabotropic
                     glutamate receptor; cd06376"
                     /db_xref="CDD:380599"
     Site            order(53,68,71,154,156,226..227)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:380599"
     Site            order(110,113,161,164,187,252)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:380599"
     Region          512..562
                     /region_name="NCD3G"
                     /note="Nine Cysteines Domain of family 3 GPCR; pfam07562"
                     /db_xref="CDD:462210"
     Region          582..892
                     /region_name="7tmC_mGluR8"
                     /note="metabotropic glutamate receptor 8 in group 3,
                     member of the class C family of seven-transmembrane G
                     protein-coupled receptors; cd15454"
                     /db_xref="CDD:320570"
     Region          582..607
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320570"
     Site            order(585,588..589,592..593,595..596,630,634,637..638,646,
                     650)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:320570"
     Region          619..640
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320570"
     Site            order(639,651..652,655..656,659,744,749,752..753,756,790,
                     793..794,797,801,814..815,818,821,825)
                     /site_type="other"
                     /note="putative allosteric modulator binding site
                     [chemical binding]"
                     /db_xref="CDD:320570"
     Region          649..673
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320570"
     Region          695..715
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320570"
     Region          745..771
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320570"
     Region          779..802
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320570"
     Region          812..837
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320570"
     CDS             1..909
                     /gene="GRM8"
                     /coded_by="XM_054053746.1:457..3186"
                     /db_xref="GeneID:104055283"
ORIGIN      
        1 mvyegkrlvs yhcfflltak fywiltlmqr thgqeyahsi rldgdiilgg lfpvhakgdr
       61 gvpcgelkke kgihrleaml yaidqinkdp dlltnitlgv rildtcsrdt yaleqsltfv
      121 qaliekdgsd vkcangdppi ftkpdkisgv igaaassvsi mvanilrlfk ipqisyasta
      181 pelsdntryd ffsrvvppds yqaqamvdiv talgwnyvst lasegnyges gveaftqisr
      241 eiggvciaqs lkipreprpg efekiikrll etpnaravim faneddirri leaakkanqs
      301 ghflwigsds wgskispvqq qeeiaegavt ilpkrtsidg fdryfrsrtl annrrnvwfa
      361 efweenfgck lgshgkrnsn ikkctgleri ardsayeqeg kvqfvidavy smayalhnmh
      421 kdlcpgyigl cprmstidgk ellsyiravn fngsagtpvi fnengdapgr ydifqyqitn
      481 ksteykiigq wtnqlhlnve dmqwanreht hpasvcslpc kagerkktvk gvpccwhcer
      541 cegyhyqvde fncelcpink rpnanrtdcq lipiiklewh spwaivpvfi ailgiiattf
      601 vivtfvrynd tpivrasgre lsyvlltgif lcysitflmi aspdtvvcsf rriflglgmc
      661 fsyaalltkt nrihrifeqg kksvtapkfi spasqlvitf slismqligv fiwfaidpph
      721 tivdygeqrt ldpenargvl kcdisdlsli cslgysillm vtctvyaikt rgvpetfnea
      781 kpigftmytt ciiwlafipi ffgtaqsaek myiqtttltv smslsasvsl gmlympkvyi
      841 iifhpeqnvq krkrsfkavv taatmqsklt qkgndrpnge vktelcesle tntsstktty
      901 vsysnqtnn
//
LOCUS       XP_053909730             909 aa            linear   VRT 09-MAR-2023
DEFINITION  metabotropic glutamate receptor 8 isoform X1 [Cuculus canorus].
ACCESSION   XP_053909730
VERSION     XP_053909730.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053755.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..909
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..909
                     /product="metabotropic glutamate receptor 8 isoform X1"
                     /calculated_mol_wt=101886
     Region          40..504
                     /region_name="PBP1_mGluR_groupIII"
                     /note="ligand-binding domain of the group III metabotropic
                     glutamate receptor; cd06376"
                     /db_xref="CDD:380599"
     Site            order(53,68,71,154,156,226..227)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:380599"
     Site            order(110,113,161,164,187,252)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:380599"
     Region          512..562
                     /region_name="NCD3G"
                     /note="Nine Cysteines Domain of family 3 GPCR; pfam07562"
                     /db_xref="CDD:462210"
     Region          582..892
                     /region_name="7tmC_mGluR8"
                     /note="metabotropic glutamate receptor 8 in group 3,
                     member of the class C family of seven-transmembrane G
                     protein-coupled receptors; cd15454"
                     /db_xref="CDD:320570"
     Region          582..607
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320570"
     Site            order(585,588..589,592..593,595..596,630,634,637..638,646,
                     650)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:320570"
     Region          619..640
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320570"
     Site            order(639,651..652,655..656,659,744,749,752..753,756,790,
                     793..794,797,801,814..815,818,821,825)
                     /site_type="other"
                     /note="putative allosteric modulator binding site
                     [chemical binding]"
                     /db_xref="CDD:320570"
     Region          649..673
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320570"
     Region          695..715
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320570"
     Region          745..771
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320570"
     Region          779..802
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320570"
     Region          812..837
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320570"
     CDS             1..909
                     /gene="GRM8"
                     /coded_by="XM_054053755.1:507..3236"
                     /db_xref="GeneID:104055283"
ORIGIN      
        1 mvyegkrlvs yhcfflltak fywiltlmqr thgqeyahsi rldgdiilgg lfpvhakgdr
       61 gvpcgelkke kgihrleaml yaidqinkdp dlltnitlgv rildtcsrdt yaleqsltfv
      121 qaliekdgsd vkcangdppi ftkpdkisgv igaaassvsi mvanilrlfk ipqisyasta
      181 pelsdntryd ffsrvvppds yqaqamvdiv talgwnyvst lasegnyges gveaftqisr
      241 eiggvciaqs lkipreprpg efekiikrll etpnaravim faneddirri leaakkanqs
      301 ghflwigsds wgskispvqq qeeiaegavt ilpkrtsidg fdryfrsrtl annrrnvwfa
      361 efweenfgck lgshgkrnsn ikkctgleri ardsayeqeg kvqfvidavy smayalhnmh
      421 kdlcpgyigl cprmstidgk ellsyiravn fngsagtpvi fnengdapgr ydifqyqitn
      481 ksteykiigq wtnqlhlnve dmqwanreht hpasvcslpc kagerkktvk gvpccwhcer
      541 cegyhyqvde fncelcpink rpnanrtdcq lipiiklewh spwaivpvfi ailgiiattf
      601 vivtfvrynd tpivrasgre lsyvlltgif lcysitflmi aspdtvvcsf rriflglgmc
      661 fsyaalltkt nrihrifeqg kksvtapkfi spasqlvitf slismqligv fiwfaidpph
      721 tivdygeqrt ldpenargvl kcdisdlsli cslgysillm vtctvyaikt rgvpetfnea
      781 kpigftmytt ciiwlafipi ffgtaqsaek myiqtttltv smslsasvsl gmlympkvyi
      841 iifhpeqnvq krkrsfkavv taatmqsklt qkgndrpnge vktelcesle tntsstktty
      901 vsysnqtnn
//
LOCUS       XP_053909738             909 aa            linear   VRT 09-MAR-2023
DEFINITION  metabotropic glutamate receptor 8 isoform X1 [Cuculus canorus].
ACCESSION   XP_053909738
VERSION     XP_053909738.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053763.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..909
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..909
                     /product="metabotropic glutamate receptor 8 isoform X1"
                     /calculated_mol_wt=101886
     Region          40..504
                     /region_name="PBP1_mGluR_groupIII"
                     /note="ligand-binding domain of the group III metabotropic
                     glutamate receptor; cd06376"
                     /db_xref="CDD:380599"
     Site            order(53,68,71,154,156,226..227)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:380599"
     Site            order(110,113,161,164,187,252)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:380599"
     Region          512..562
                     /region_name="NCD3G"
                     /note="Nine Cysteines Domain of family 3 GPCR; pfam07562"
                     /db_xref="CDD:462210"
     Region          582..892
                     /region_name="7tmC_mGluR8"
                     /note="metabotropic glutamate receptor 8 in group 3,
                     member of the class C family of seven-transmembrane G
                     protein-coupled receptors; cd15454"
                     /db_xref="CDD:320570"
     Region          582..607
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320570"
     Site            order(585,588..589,592..593,595..596,630,634,637..638,646,
                     650)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:320570"
     Region          619..640
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320570"
     Site            order(639,651..652,655..656,659,744,749,752..753,756,790,
                     793..794,797,801,814..815,818,821,825)
                     /site_type="other"
                     /note="putative allosteric modulator binding site
                     [chemical binding]"
                     /db_xref="CDD:320570"
     Region          649..673
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320570"
     Region          695..715
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320570"
     Region          745..771
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320570"
     Region          779..802
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320570"
     Region          812..837
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320570"
     CDS             1..909
                     /gene="GRM8"
                     /coded_by="XM_054053763.1:355..3084"
                     /db_xref="GeneID:104055283"
ORIGIN      
        1 mvyegkrlvs yhcfflltak fywiltlmqr thgqeyahsi rldgdiilgg lfpvhakgdr
       61 gvpcgelkke kgihrleaml yaidqinkdp dlltnitlgv rildtcsrdt yaleqsltfv
      121 qaliekdgsd vkcangdppi ftkpdkisgv igaaassvsi mvanilrlfk ipqisyasta
      181 pelsdntryd ffsrvvppds yqaqamvdiv talgwnyvst lasegnyges gveaftqisr
      241 eiggvciaqs lkipreprpg efekiikrll etpnaravim faneddirri leaakkanqs
      301 ghflwigsds wgskispvqq qeeiaegavt ilpkrtsidg fdryfrsrtl annrrnvwfa
      361 efweenfgck lgshgkrnsn ikkctgleri ardsayeqeg kvqfvidavy smayalhnmh
      421 kdlcpgyigl cprmstidgk ellsyiravn fngsagtpvi fnengdapgr ydifqyqitn
      481 ksteykiigq wtnqlhlnve dmqwanreht hpasvcslpc kagerkktvk gvpccwhcer
      541 cegyhyqvde fncelcpink rpnanrtdcq lipiiklewh spwaivpvfi ailgiiattf
      601 vivtfvrynd tpivrasgre lsyvlltgif lcysitflmi aspdtvvcsf rriflglgmc
      661 fsyaalltkt nrihrifeqg kksvtapkfi spasqlvitf slismqligv fiwfaidpph
      721 tivdygeqrt ldpenargvl kcdisdlsli cslgysillm vtctvyaikt rgvpetfnea
      781 kpigftmytt ciiwlafipi ffgtaqsaek myiqtttltv smslsasvsl gmlympkvyi
      841 iifhpeqnvq krkrsfkavv taatmqsklt qkgndrpnge vktelcesle tntsstktty
      901 vsysnqtnn
//
LOCUS       XP_053909745             908 aa            linear   VRT 09-MAR-2023
DEFINITION  metabotropic glutamate receptor 8 isoform X2 [Cuculus canorus].
ACCESSION   XP_053909745
VERSION     XP_053909745.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053770.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..908
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..908
                     /product="metabotropic glutamate receptor 8 isoform X2"
                     /calculated_mol_wt=101634
     Region          40..504
                     /region_name="PBP1_mGluR_groupIII"
                     /note="ligand-binding domain of the group III metabotropic
                     glutamate receptor; cd06376"
                     /db_xref="CDD:380599"
     Site            order(53,68,71,154,156,226..227)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:380599"
     Site            order(110,113,161,164,187,252)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:380599"
     Region          512..562
                     /region_name="NCD3G"
                     /note="Nine Cysteines Domain of family 3 GPCR; pfam07562"
                     /db_xref="CDD:462210"
     Region          582..892
                     /region_name="7tmC_mGluR8"
                     /note="metabotropic glutamate receptor 8 in group 3,
                     member of the class C family of seven-transmembrane G
                     protein-coupled receptors; cd15454"
                     /db_xref="CDD:320570"
     Region          582..607
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320570"
     Site            order(585,588..589,592..593,595..596,630,634,637..638,646,
                     650)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:320570"
     Region          619..640
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320570"
     Site            order(639,651..652,655..656,659,744,749,752..753,756,790,
                     793..794,797,801,814..815,818,821,825)
                     /site_type="other"
                     /note="putative allosteric modulator binding site
                     [chemical binding]"
                     /db_xref="CDD:320570"
     Region          649..673
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320570"
     Region          695..715
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320570"
     Region          745..771
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320570"
     Region          779..802
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320570"
     Region          812..837
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320570"
     CDS             1..908
                     /gene="GRM8"
                     /coded_by="XM_054053770.1:827..3553"
                     /db_xref="GeneID:104055283"
ORIGIN      
        1 mvyegkrlvs yhcfflltak fywiltlmqr thgqeyahsi rldgdiilgg lfpvhakgdr
       61 gvpcgelkke kgihrleaml yaidqinkdp dlltnitlgv rildtcsrdt yaleqsltfv
      121 qaliekdgsd vkcangdppi ftkpdkisgv igaaassvsi mvanilrlfk ipqisyasta
      181 pelsdntryd ffsrvvppds yqaqamvdiv talgwnyvst lasegnyges gveaftqisr
      241 eiggvciaqs lkipreprpg efekiikrll etpnaravim faneddirri leaakkanqs
      301 ghflwigsds wgskispvqq qeeiaegavt ilpkrtsidg fdryfrsrtl annrrnvwfa
      361 efweenfgck lgshgkrnsn ikkctgleri ardsayeqeg kvqfvidavy smayalhnmh
      421 kdlcpgyigl cprmstidgk ellsyiravn fngsagtpvi fnengdapgr ydifqyqitn
      481 ksteykiigq wtnqlhlnve dmqwanreht hpasvcslpc kagerkktvk gvpccwhcer
      541 cegyhyqvde fncelcpink rpnanrtdcq lipiiklewh spwaivpvfi ailgiiattf
      601 vivtfvrynd tpivrasgre lsyvlltgif lcysitflmi aspdtvvcsf rriflglgmc
      661 fsyaalltkt nrihrifeqg kksvtapkfi spasqlvitf slismqligv fiwfaidpph
      721 tivdygeqrt ldpenargvl kcdisdlsli cslgysillm vtctvyaikt rgvpetfnea
      781 kpigftmytt ciiwlafipi ffgtaqsaek myiqtttltv smslsasvsl gmlympkvyi
      841 iifhpeqnvq krkrsfkavv taatmqsklt qkgndrpnge vktelcesle tnskssvdfp
      901 mvksgsts
//
LOCUS       XP_053909755             597 aa            linear   VRT 09-MAR-2023
DEFINITION  metabotropic glutamate receptor 8 isoform X3 [Cuculus canorus].
ACCESSION   XP_053909755
VERSION     XP_053909755.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053780.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..597
                     /product="metabotropic glutamate receptor 8 isoform X3"
                     /calculated_mol_wt=66758
     Region          40..499
                     /region_name="PBP1_mGluR_groupIII"
                     /note="ligand-binding domain of the group III metabotropic
                     glutamate receptor; cd06376"
                     /db_xref="CDD:380599"
     Site            order(53,68,71,154,156,226..227)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:380599"
     Site            order(110,113,161,164,187,252)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:380599"
     Region          <492..594
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          500..525
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320568"
     CDS             1..597
                     /gene="GRM8"
                     /coded_by="XM_054053780.1:828..2621"
                     /db_xref="GeneID:104055283"
ORIGIN      
        1 mvyegkrlvs yhcfflltak fywiltlmqr thgqeyahsi rldgdiilgg lfpvhakgdr
       61 gvpcgelkke kgihrleaml yaidqinkdp dlltnitlgv rildtcsrdt yaleqsltfv
      121 qaliekdgsd vkcangdppi ftkpdkisgv igaaassvsi mvanilrlfk ipqisyasta
      181 pelsdntryd ffsrvvppds yqaqamvdiv talgwnyvst lasegnyges gveaftqisr
      241 eiggvciaqs lkipreprpg efekiikrll etpnaravim faneddirri leaakkanqs
      301 ghflwigsds wgskispvqq qeeiaegavt ilpkrtsidg fdryfrsrtl annrrnvwfa
      361 efweenfgck lgshgkrnsn ikkctgleri ardsayeqeg kvqfvidavy smayalhnmh
      421 kdlcpgyigl cprmstidgk ellsyiravn fngsagtpvi fnengdapgr ydifqyqitn
      481 ksteykiigq wtnqlhlnmy iqtttltvsm slsasvslgm lympkvyiii fhpeqnvqkr
      541 krsfkavvta atmqskltqk gndrpngevk telcesletn tsstkttyvs ysnqtnn
//
LOCUS       XP_009564278             836 aa            linear   VRT 09-MAR-2023
DEFINITION  neuroligin-4, X-linked isoform X1 [Cuculus canorus].
ACCESSION   XP_009564278
VERSION     XP_009564278.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565983.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..836
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..836
                     /product="neuroligin-4, X-linked isoform X1"
                     /calculated_mol_wt=93842
     Region          44..610
                     /region_name="COesterase"
                     /note="Carboxylesterase family; pfam00135"
                     /db_xref="CDD:395084"
     Site            order(194..196,273..275,278,419,425..426,464,510,513)
                     /site_type="other"
                     /note="substrate binding pocket [chemical binding]"
                     /db_xref="CDD:238191"
     Site            order(274,395,509)
                     /site_type="active"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:238191"
     CDS             1..836
                     /gene="NLGN4X"
                     /coded_by="XM_009565983.2:371..2881"
                     /db_xref="GeneID:104063731"
ORIGIN      
        1 mskpmgllwl pliftpvcvm lnsnfllwit alairftlid gqaqypvvtt nygkirglrt
       61 plpneilgpv eqylgvpyas pptgerrfqp peppsswtgv rnatqfaavc pqyldersll
      121 ndmlpvwfta nldtvvtyvq dqnedclyln iyvptedgan tkksaddits ndrgededih
      181 dqnskkpvmv yihggsymeg tgnmidgsil asygnvivvt lnyrlgvlgf lstgdqaakg
      241 nyglldqiqa lrwieenigs fggdpkrvti fgsgagascv slltlshyse glfqkaiiqs
      301 gtalsswavn yqpakytril adkvgcdmld ttdlveclrn knykeliqqt itpatyhiaf
      361 gpvidgdvip ddpqilmeqg eflnydimlg vnqgeglkfv dgivdnedgv spndfdfsvs
      421 nfvdnlygyp egkdtlreti kfmytdwadk enpetrrktl valftdhqwv apavatadlh
      481 aqygsptyfy afyhhcqsem kpswadsahg devpyvfgip migptelfnc nfskndvmls
      541 avvmtywtnf aktgdpnqpv pqdtkfihtk pnrfeevaws kynpkdqlyl higlkprvrd
      601 hyratkvafw lelvphlhnl neifqyvstt tkvpppdmts fpyvtrrspg klwpatkrpa
      661 mtpannpkhs kdthktaped ttvlienkrd ystelsvtia vgasllflni lafaalyykk
      721 dkrrhethrr pspqrnttnd iahiqneeim slqmkqlehd heceslqahd tlrltcppdy
      781 tltlrrspdd iplmtpntit mipntltgmq plhtfntfsg gqnstnlphg hsttrv
//
LOCUS       XP_009564280             816 aa            linear   VRT 09-MAR-2023
DEFINITION  neuroligin-4, X-linked isoform X2 [Cuculus canorus].
ACCESSION   XP_009564280
VERSION     XP_009564280.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565985.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..816
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..816
                     /product="neuroligin-4, X-linked isoform X2"
                     /calculated_mol_wt=91736
     Region          44..590
                     /region_name="COesterase"
                     /note="Carboxylesterase family; pfam00135"
                     /db_xref="CDD:395084"
     Site            order(174..176,253..255,258,399,405..406,444,490,493)
                     /site_type="other"
                     /note="substrate binding pocket [chemical binding]"
                     /db_xref="CDD:238191"
     Site            order(254,375,489)
                     /site_type="active"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:238191"
     CDS             1..816
                     /gene="NLGN4X"
                     /coded_by="XM_009565985.2:371..2821"
                     /db_xref="GeneID:104063731"
ORIGIN      
        1 mskpmgllwl pliftpvcvm lnsnfllwit alairftlid gqaqypvvtt nygkirglrt
       61 plpneilgpv eqylgvpyas pptgerrfqp peppsswtgv rnatqfaavc pqyldersll
      121 ndmlpvwfta nldtvvtyvq dqnedclyln iyvpteddih dqnskkpvmv yihggsymeg
      181 tgnmidgsil asygnvivvt lnyrlgvlgf lstgdqaakg nyglldqiqa lrwieenigs
      241 fggdpkrvti fgsgagascv slltlshyse glfqkaiiqs gtalsswavn yqpakytril
      301 adkvgcdmld ttdlveclrn knykeliqqt itpatyhiaf gpvidgdvip ddpqilmeqg
      361 eflnydimlg vnqgeglkfv dgivdnedgv spndfdfsvs nfvdnlygyp egkdtlreti
      421 kfmytdwadk enpetrrktl valftdhqwv apavatadlh aqygsptyfy afyhhcqsem
      481 kpswadsahg devpyvfgip migptelfnc nfskndvmls avvmtywtnf aktgdpnqpv
      541 pqdtkfihtk pnrfeevaws kynpkdqlyl higlkprvrd hyratkvafw lelvphlhnl
      601 neifqyvstt tkvpppdmts fpyvtrrspg klwpatkrpa mtpannpkhs kdthktaped
      661 ttvlienkrd ystelsvtia vgasllflni lafaalyykk dkrrhethrr pspqrnttnd
      721 iahiqneeim slqmkqlehd heceslqahd tlrltcppdy tltlrrspdd iplmtpntit
      781 mipntltgmq plhtfntfsg gqnstnlphg hsttrv
//
LOCUS       XP_053909783            1018 aa            linear   VRT 09-MAR-2023
DEFINITION  signal peptide, CUB and EGF-like domain-containing protein 1
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053909783
VERSION     XP_053909783.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053808.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1018
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1018
                     /product="signal peptide, CUB and EGF-like
                     domain-containing protein 1 isoform X1"
                     /calculated_mol_wt=112368
     Region          34..69
                     /region_name="EGF_3"
                     /note="EGF domain; pfam12947"
                     /db_xref="CDD:463759"
     Region          81..112
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          118..153
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          163..199
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          203..238
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          272..307
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          313..348
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          350..380
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain; smart00179"
                     /db_xref="CDD:214542"
     Region          393..428
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          666..713
                     /region_name="Ephrin_rec_like"
                     /note="Tyrosine-protein kinase ephrin type A/B
                     receptor-like; pfam07699"
                     /db_xref="CDD:429604"
     Region          720..767
                     /region_name="Ephrin_rec_like"
                     /note="Tyrosine-protein kinase ephrin type A/B
                     receptor-like; pfam07699"
                     /db_xref="CDD:429604"
     Region          776..823
                     /region_name="Ephrin_rec_like"
                     /note="Tyrosine-protein kinase ephrin type A/B
                     receptor-like; pfam07699"
                     /db_xref="CDD:429604"
     Region          828..939
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cd00041"
                     /db_xref="CDD:238001"
     Site            order(836,838,840,867,872,910,934,936,938..939)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     CDS             1..1018
                     /gene="SCUBE1"
                     /coded_by="XM_054053808.1:111..3167"
                     /db_xref="GeneID:104067305"
ORIGIN      
        1 mgtvcfsrrc cllfalawag rlaggsggad vdecaeatdd chidaicqnt pksykcickp
       61 gykgegkqce didecendfy nggcvhecin ipgnyrctcy dgfmlahdgh ncldvdecqd
      121 nnggcqqicv ntmgsyecqc kegfflsdnq htcihrsieg mncmnkdhgc ahicretpkg
      181 gvacecrpgf elaknqkdck ltcnygnggc qhtcddtdtg pvcgchqkya lhsdgrtcie
      241 kdeaaiesse ynatsvadvd krvkrrllme tcavnnggcd rtckdtatgv rcscpvgftl
      301 qpdgktckdi declvnnggc dhfcrntvgs fecscqkgyk lltdertcqd idecsfertc
      361 dhtcinypgs feclchkgyt lyglthcgdi decsisngsc dygclntmgs yecvcppgkk
      421 lhwnkkdcie vvkclpnakp apkaqlvcsk tgsiescfls cpsntlfvpd sensytlscg
      481 ipiqqgkaqq krnatlpsca dslappikqk arfkikdakc hlrprskekt kdsgkqaglg
      541 gqfpctdncq ltfvnlkcds skkkrrgrks pskevshita efevemksee vsdtcnidcv
      601 rkrmeqklqt aiktlrksin kqqfyiqfsg aeyevaqkpa kategheacs tgqvlqdgkc
      661 vtcstgtfys gernqcvpcs pgtyqdtegq ltcepcpsnd gqgvagarnv secggqcspg
      721 hyspdgfkpc rvcplgtyqp epgrtlcfpc ggglvtkyeg avsfqdcetk vhcspghyyn
      781 stthrcircp vgtyqpefgq nycvtcpgnt stdfdgstnv thcknqhcgg elgdytgyie
      841 spnypgdypa nieciwninp ppkrrilivv peiflpiede cgdvlvmrks asptsittye
      901 tcqtyerpia ftsrsrklwi qfksnegnsg kgfqvpyvty dedyqqlied ivrdgrlyas
      961 enhqeilkdk klikalfdvl ahpqnyfkyt aqeskemfpr sfikllrskv srflrpyk
//
LOCUS       XP_053909791            1011 aa            linear   VRT 09-MAR-2023
DEFINITION  signal peptide, CUB and EGF-like domain-containing protein 1
            isoform X2 [Cuculus canorus].
ACCESSION   XP_053909791
VERSION     XP_053909791.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053816.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1011
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1011
                     /product="signal peptide, CUB and EGF-like
                     domain-containing protein 1 isoform X2"
                     /calculated_mol_wt=111678
     Region          34..69
                     /region_name="EGF_3"
                     /note="EGF domain; pfam12947"
                     /db_xref="CDD:463759"
     Region          81..112
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          118..153
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          163..199
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          203..238
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          272..307
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          313..348
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          350..380
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain; smart00179"
                     /db_xref="CDD:214542"
     Region          393..428
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          659..706
                     /region_name="Ephrin_rec_like"
                     /note="Tyrosine-protein kinase ephrin type A/B
                     receptor-like; pfam07699"
                     /db_xref="CDD:429604"
     Region          713..760
                     /region_name="Ephrin_rec_like"
                     /note="Tyrosine-protein kinase ephrin type A/B
                     receptor-like; pfam07699"
                     /db_xref="CDD:429604"
     Region          769..816
                     /region_name="Ephrin_rec_like"
                     /note="Tyrosine-protein kinase ephrin type A/B
                     receptor-like; pfam07699"
                     /db_xref="CDD:429604"
     Region          821..932
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cd00041"
                     /db_xref="CDD:238001"
     Site            order(829,831,833,860,865,903,927,929,931..932)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     CDS             1..1011
                     /gene="SCUBE1"
                     /coded_by="XM_054053816.1:130..3165"
                     /db_xref="GeneID:104067305"
ORIGIN      
        1 mgtvcfsrrc cllfalawag rlaggsggad vdecaeatdd chidaicqnt pksykcickp
       61 gykgegkqce didecendfy nggcvhecin ipgnyrctcy dgfmlahdgh ncldvdecqd
      121 nnggcqqicv ntmgsyecqc kegfflsdnq htcihrsieg mncmnkdhgc ahicretpkg
      181 gvacecrpgf elaknqkdck ltcnygnggc qhtcddtdtg pvcgchqkya lhsdgrtcie
      241 kdeaaiesse ynatsvadvd krvkrrllme tcavnnggcd rtckdtatgv rcscpvgftl
      301 qpdgktckdi declvnnggc dhfcrntvgs fecscqkgyk lltdertcqd idecsfertc
      361 dhtcinypgs feclchkgyt lyglthcgdi decsisngsc dygclntmgs yecvcppgkk
      421 lhwnkkdcie vvkclpnakp apkaqlvcsk tgsiescfls cpsntlfvpd sensytlscg
      481 ipiqqgkaqq krnatlpsca dslappikqk arfkikdakc hlrprskekt kdsgkqagld
      541 ncqltfvnlk cdsskkkrrg rkspskevsh itaefevemk seevsdtcni dcvrkrmeqk
      601 lqtaiktlrk sinkqqfyiq fsgaeyevaq kpakateghe acstgqvlqd gkcvtcstgt
      661 fysgernqcv pcspgtyqdt egqltcepcp sndgqgvaga rnvsecggqc spghyspdgf
      721 kpcrvcplgt yqpepgrtlc fpcggglvtk yegavsfqdc etkvhcspgh yynstthrci
      781 rcpvgtyqpe fgqnycvtcp gntstdfdgs tnvthcknqh cggelgdytg yiespnypgd
      841 ypanieciwn inpppkrril ivvpeiflpi edecgdvlvm rksasptsit tyetcqtyer
      901 piaftsrsrk lwiqfksneg nsgkgfqvpy vtydedyqql iedivrdgrl yasenhqeil
      961 kdkklikalf dvlahpqnyf kytaqeskem fprsfikllr skvsrflrpy k
//
LOCUS       XP_053909797             988 aa            linear   VRT 09-MAR-2023
DEFINITION  signal peptide, CUB and EGF-like domain-containing protein 1
            isoform X3 [Cuculus canorus].
ACCESSION   XP_053909797
VERSION     XP_053909797.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053822.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..988
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..988
                     /product="signal peptide, CUB and EGF-like
                     domain-containing protein 1 isoform X3"
                     /calculated_mol_wt=108962
     Region          34..69
                     /region_name="EGF_3"
                     /note="EGF domain; pfam12947"
                     /db_xref="CDD:463759"
     Region          81..112
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          118..153
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          163..199
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          203..238
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          242..277
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          283..318
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          320..350
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain; smart00179"
                     /db_xref="CDD:214542"
     Region          363..398
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          636..683
                     /region_name="Ephrin_rec_like"
                     /note="Tyrosine-protein kinase ephrin type A/B
                     receptor-like; pfam07699"
                     /db_xref="CDD:429604"
     Region          690..737
                     /region_name="Ephrin_rec_like"
                     /note="Tyrosine-protein kinase ephrin type A/B
                     receptor-like; pfam07699"
                     /db_xref="CDD:429604"
     Region          746..793
                     /region_name="Ephrin_rec_like"
                     /note="Tyrosine-protein kinase ephrin type A/B
                     receptor-like; pfam07699"
                     /db_xref="CDD:429604"
     Region          798..909
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cd00041"
                     /db_xref="CDD:238001"
     Site            order(806,808,810,837,842,880,904,906,908..909)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     CDS             1..988
                     /gene="SCUBE1"
                     /coded_by="XM_054053822.1:130..3096"
                     /db_xref="GeneID:104067305"
ORIGIN      
        1 mgtvcfsrrc cllfalawag rlaggsggad vdecaeatdd chidaicqnt pksykcickp
       61 gykgegkqce didecendfy nggcvhecin ipgnyrctcy dgfmlahdgh ncldvdecqd
      121 nnggcqqicv ntmgsyecqc kegfflsdnq htcihrsieg mncmnkdhgc ahicretpkg
      181 gvacecrpgf elaknqkdck ltcnygnggc qhtcddtdtg pvcgchqkya lhsdgrtcie
      241 tcavnnggcd rtckdtatgv rcscpvgftl qpdgktckdi declvnnggc dhfcrntvgs
      301 fecscqkgyk lltdertcqd idecsfertc dhtcinypgs feclchkgyt lyglthcgdi
      361 decsisngsc dygclntmgs yecvcppgkk lhwnkkdcie vvkclpnakp apkaqlvcsk
      421 tgsiescfls cpsntlfvpd sensytlscg ipiqqgkaqq krnatlpsca dslappikqk
      481 arfkikdakc hlrprskekt kdsgkqaglg gqfpctdncq ltfvnlkcds skkkrrgrks
      541 pskevshita efevemksee vsdtcnidcv rkrmeqklqt aiktlrksin kqqfyiqfsg
      601 aeyevaqkpa kategheacs tgqvlqdgkc vtcstgtfys gernqcvpcs pgtyqdtegq
      661 ltcepcpsnd gqgvagarnv secggqcspg hyspdgfkpc rvcplgtyqp epgrtlcfpc
      721 ggglvtkyeg avsfqdcetk vhcspghyyn stthrcircp vgtyqpefgq nycvtcpgnt
      781 stdfdgstnv thcknqhcgg elgdytgyie spnypgdypa nieciwninp ppkrrilivv
      841 peiflpiede cgdvlvmrks asptsittye tcqtyerpia ftsrsrklwi qfksnegnsg
      901 kgfqvpyvty dedyqqlied ivrdgrlyas enhqeilkdk klikalfdvl ahpqnyfkyt
      961 aqeskemfpr sfikllrskv srflrpyk
//
LOCUS       XP_053909805             981 aa            linear   VRT 09-MAR-2023
DEFINITION  signal peptide, CUB and EGF-like domain-containing protein 1
            isoform X4 [Cuculus canorus].
ACCESSION   XP_053909805
VERSION     XP_053909805.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053830.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..981
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..981
                     /product="signal peptide, CUB and EGF-like
                     domain-containing protein 1 isoform X4"
                     /calculated_mol_wt=108271
     Region          34..69
                     /region_name="EGF_3"
                     /note="EGF domain; pfam12947"
                     /db_xref="CDD:463759"
     Region          81..112
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          118..153
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          163..199
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          203..238
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          242..277
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          283..318
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          320..350
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain; smart00179"
                     /db_xref="CDD:214542"
     Region          363..398
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          629..676
                     /region_name="Ephrin_rec_like"
                     /note="Tyrosine-protein kinase ephrin type A/B
                     receptor-like; pfam07699"
                     /db_xref="CDD:429604"
     Region          683..730
                     /region_name="Ephrin_rec_like"
                     /note="Tyrosine-protein kinase ephrin type A/B
                     receptor-like; pfam07699"
                     /db_xref="CDD:429604"
     Region          739..786
                     /region_name="Ephrin_rec_like"
                     /note="Tyrosine-protein kinase ephrin type A/B
                     receptor-like; pfam07699"
                     /db_xref="CDD:429604"
     Region          791..902
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cd00041"
                     /db_xref="CDD:238001"
     Site            order(799,801,803,830,835,873,897,899,901..902)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     CDS             1..981
                     /gene="SCUBE1"
                     /coded_by="XM_054053830.1:130..3075"
                     /db_xref="GeneID:104067305"
ORIGIN      
        1 mgtvcfsrrc cllfalawag rlaggsggad vdecaeatdd chidaicqnt pksykcickp
       61 gykgegkqce didecendfy nggcvhecin ipgnyrctcy dgfmlahdgh ncldvdecqd
      121 nnggcqqicv ntmgsyecqc kegfflsdnq htcihrsieg mncmnkdhgc ahicretpkg
      181 gvacecrpgf elaknqkdck ltcnygnggc qhtcddtdtg pvcgchqkya lhsdgrtcie
      241 tcavnnggcd rtckdtatgv rcscpvgftl qpdgktckdi declvnnggc dhfcrntvgs
      301 fecscqkgyk lltdertcqd idecsfertc dhtcinypgs feclchkgyt lyglthcgdi
      361 decsisngsc dygclntmgs yecvcppgkk lhwnkkdcie vvkclpnakp apkaqlvcsk
      421 tgsiescfls cpsntlfvpd sensytlscg ipiqqgkaqq krnatlpsca dslappikqk
      481 arfkikdakc hlrprskekt kdsgkqagld ncqltfvnlk cdsskkkrrg rkspskevsh
      541 itaefevemk seevsdtcni dcvrkrmeqk lqtaiktlrk sinkqqfyiq fsgaeyevaq
      601 kpakateghe acstgqvlqd gkcvtcstgt fysgernqcv pcspgtyqdt egqltcepcp
      661 sndgqgvaga rnvsecggqc spghyspdgf kpcrvcplgt yqpepgrtlc fpcggglvtk
      721 yegavsfqdc etkvhcspgh yynstthrci rcpvgtyqpe fgqnycvtcp gntstdfdgs
      781 tnvthcknqh cggelgdytg yiespnypgd ypanieciwn inpppkrril ivvpeiflpi
      841 edecgdvlvm rksasptsit tyetcqtyer piaftsrsrk lwiqfksneg nsgkgfqvpy
      901 vtydedyqql iedivrdgrl yasenhqeil kdkklikalf dvlahpqnyf kytaqeskem
      961 fprsfikllr skvsrflrpy k
//
LOCUS       XP_053909812             964 aa            linear   VRT 09-MAR-2023
DEFINITION  signal peptide, CUB and EGF-like domain-containing protein 1
            isoform X5 [Cuculus canorus].
ACCESSION   XP_053909812
VERSION     XP_053909812.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053837.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..964
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..964
                     /product="signal peptide, CUB and EGF-like
                     domain-containing protein 1 isoform X5"
                     /calculated_mol_wt=106823
     Region          34..69
                     /region_name="EGF_3"
                     /note="EGF domain; pfam12947"
                     /db_xref="CDD:463759"
     Region          81..112
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          118..153
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          163..199
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          203..238
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          272..307
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          313..348
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          350..380
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain; smart00179"
                     /db_xref="CDD:214542"
     Region          393..428
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          666..713
                     /region_name="Ephrin_rec_like"
                     /note="Tyrosine-protein kinase ephrin type A/B
                     receptor-like; pfam07699"
                     /db_xref="CDD:429604"
     Region          722..769
                     /region_name="Ephrin_rec_like"
                     /note="Tyrosine-protein kinase ephrin type A/B
                     receptor-like; pfam07699"
                     /db_xref="CDD:429604"
     Region          774..885
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cd00041"
                     /db_xref="CDD:238001"
     Site            order(782,784,786,813,818,856,880,882,884..885)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     CDS             1..964
                     /gene="SCUBE1"
                     /coded_by="XM_054053837.1:130..3024"
                     /db_xref="GeneID:104067305"
ORIGIN      
        1 mgtvcfsrrc cllfalawag rlaggsggad vdecaeatdd chidaicqnt pksykcickp
       61 gykgegkqce didecendfy nggcvhecin ipgnyrctcy dgfmlahdgh ncldvdecqd
      121 nnggcqqicv ntmgsyecqc kegfflsdnq htcihrsieg mncmnkdhgc ahicretpkg
      181 gvacecrpgf elaknqkdck ltcnygnggc qhtcddtdtg pvcgchqkya lhsdgrtcie
      241 kdeaaiesse ynatsvadvd krvkrrllme tcavnnggcd rtckdtatgv rcscpvgftl
      301 qpdgktckdi declvnnggc dhfcrntvgs fecscqkgyk lltdertcqd idecsfertc
      361 dhtcinypgs feclchkgyt lyglthcgdi decsisngsc dygclntmgs yecvcppgkk
      421 lhwnkkdcie vvkclpnakp apkaqlvcsk tgsiescfls cpsntlfvpd sensytlscg
      481 ipiqqgkaqq krnatlpsca dslappikqk arfkikdakc hlrprskekt kdsgkqaglg
      541 gqfpctdncq ltfvnlkcds skkkrrgrks pskevshita efevemksee vsdtcnidcv
      601 rkrmeqklqt aiktlrksin kqqfyiqfsg aeyevaqkpa kategheacs tgqvlqdgkc
      661 gqcspghysp dgfkpcrvcp lgtyqpepgr tlcfpcgggl vtkyegavsf qdcetkvhcs
      721 pghyynstth rcircpvgty qpefgqnycv tcpgntstdf dgstnvthck nqhcggelgd
      781 ytgyiespny pgdypaniec iwninpppkr rilivvpeif lpiedecgdv lvmrksaspt
      841 sittyetcqt yerpiaftsr srklwiqfks negnsgkgfq vpyvtydedy qqliedivrd
      901 grlyasenhq eilkdkklik alfdvlahpq nyfkytaqes kemfprsfik llrskvsrfl
      961 rpyk
//
LOCUS       XP_053909826             888 aa            linear   VRT 09-MAR-2023
DEFINITION  prostaglandin F2 receptor negative regulator isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053909826
VERSION     XP_053909826.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053851.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..888
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..888
                     /product="prostaglandin F2 receptor negative regulator
                     isoform X1"
                     /calculated_mol_wt=99970
     Region          46..127
                     /region_name="IGv"
                     /note="Immunoglobulin V-Type; smart00406"
                     /db_xref="CDD:214650"
     Region          46..50
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409481"
     Region          62..66
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409481"
     Region          107..112
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409481"
     Region          122..127
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409481"
     Region          142..145
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409481"
     Region          289..398
                     /region_name="IgV"
                     /note="Immunoglobulin variable domain (IgV); cd00099"
                     /db_xref="CDD:409355"
     Region          289..309
                     /region_name="FR1"
                     /note="FR1 [structural motif]"
                     /db_xref="CDD:409355"
     Region          289..292
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409355"
     Region          296..298
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409355"
     Region          302..310
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409355"
     Site            order(316,318,325,327,337,339,379,381,383,392..394)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:409355"
     Region          316..339
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409355"
     Region          316..327
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409355"
     Region          337..340
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409355"
     Region          340..355
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409355"
     Region          355..360
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409355"
     Region          356..384
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409355"
     Region          364..370
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409355"
     Region          378..385
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409355"
     Region          385..391
                     /region_name="CDR3"
                     /note="CDR3 [structural motif]"
                     /db_xref="CDD:409355"
     Region          391..398
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409355"
     Region          462..527
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          467..470
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          477..481
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          502..511
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          521..526
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     CDS             1..888
                     /gene="PTGFRN"
                     /coded_by="XM_054053851.1:152..2818"
                     /db_xref="GeneID:104056022"
ORIGIN      
        1 mghrgerasc vplllfllll lllafcrgrv vrvpkgplir vmgtevtipc svsdydgpse
       61 qnfdwefsre adfmrivstw dstftsedyq krvgqgdikl rrssndavel viksiqptdq
      121 gtykcstpst datvqgnyda evqvkviadg lsvsgskars stslrlsegd sfklrcsait
      181 tspehthlhv twqirsglsw rdilsltheg kfqpgpgyee ryrngdirld tgandtyrls
      241 vsqassldgg ayrclvsewv rgadgswqki qeksveianv aiqrtaldvv istsnvslte
      301 rdsldltcni ttdrsgifea evmwyfstsp ddtlseaqvl lsvdrdsvvs dstlislsrv
      361 drnsyhllvr dvdvedsgyy fcqaavwvpl hngswhkvve rtsapvsvvv talepdyevf
      421 lnasktpkfs ddptelncri tnaqdteani rftvswyyrq rlrsddvvse ellatmdadw
      481 tlqlgdrsre rthngeiiff kkaadtfslr iqwtsesdrg dyfcvisaws rhrnnswvks
      541 kdvtsasvni fwatqdytlt veavklkpff vaghtfemtc kvsskniktp rysvlitaek
      601 pltdqsnpng ttriislnqd svvrleewtd qtrvdgvvle kvqenefryr myqtqisdag
      661 lyrcvvtaws pggggmwrea vnglsnpiqi dfqtsgpvfn vsvhsdnptv yqgeladllc
      721 ivttegmple pddmsfdvsw favrsfaldr epvllasvdr rgivtqsrrn gssdlsleri
      781 splefrlrvh gcedhdfgnh ycivtpwvrs atgvwqrepd ikakpiflsv kmdvlnafky
      841 plligfglat vigllsclig ycssrwcckk evqetrrerr rlmsmemd
//
LOCUS       XP_053909834             886 aa            linear   VRT 09-MAR-2023
DEFINITION  prostaglandin F2 receptor negative regulator isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053909834
VERSION     XP_053909834.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053859.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..886
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..886
                     /product="prostaglandin F2 receptor negative regulator
                     isoform X2"
                     /calculated_mol_wt=99786
     Region          46..127
                     /region_name="IGv"
                     /note="Immunoglobulin V-Type; smart00406"
                     /db_xref="CDD:214650"
     Region          46..50
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409481"
     Region          62..66
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409481"
     Region          107..112
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409481"
     Region          122..127
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409481"
     Region          142..145
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409481"
     Region          287..396
                     /region_name="IgV"
                     /note="Immunoglobulin variable domain (IgV); cd00099"
                     /db_xref="CDD:409355"
     Region          287..307
                     /region_name="FR1"
                     /note="FR1 [structural motif]"
                     /db_xref="CDD:409355"
     Region          287..290
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409355"
     Region          294..296
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409355"
     Region          300..308
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409355"
     Site            order(314,316,323,325,335,337,377,379,381,390..392)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:409355"
     Region          314..337
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409355"
     Region          314..325
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409355"
     Region          335..338
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409355"
     Region          338..353
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409355"
     Region          353..358
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409355"
     Region          354..382
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409355"
     Region          362..368
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409355"
     Region          376..383
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409355"
     Region          383..389
                     /region_name="CDR3"
                     /note="CDR3 [structural motif]"
                     /db_xref="CDD:409355"
     Region          389..396
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409355"
     Region          460..525
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          465..468
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          475..479
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          500..509
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          519..524
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     CDS             1..886
                     /gene="PTGFRN"
                     /coded_by="XM_054053859.1:154..2814"
                     /db_xref="GeneID:104056022"
ORIGIN      
        1 mghrgerasc vplllfllll lllafcrgrv vrvpkgplir vmgtevtipc svsdydgpse
       61 qnfdwefsre adfmrivstw dstftsedyq krvgqgdikl rrssndavel viksiqptdq
      121 gtykcstpst datvqgnyda evqvkviadg lsvsgskars stslrlsegd sfklrcsait
      181 tspehthlhv twqirsglsw rdilsltheg kfqpgpgyee ryrngdirld tgandtyrls
      241 vsqassldgg ayrclvsewv rgadgswqki qeksveianv aiqrtdvvis tsnvslterd
      301 sldltcnitt drsgifeaev mwyfstspdd tlseaqvlls vdrdsvvsds tlislsrvdr
      361 nsyhllvrdv dvedsgyyfc qaavwvplhn gswhkvvert sapvsvvvta lepdyevfln
      421 asktpkfsdd ptelncritn aqdteanirf tvswyyrqrl rsddvvseel latmdadwtl
      481 qlgdrsrert hngeiiffkk aadtfslriq wtsesdrgdy fcvisawsrh rnnswvkskd
      541 vtsasvnifw atqdytltve avklkpffva ghtfemtckv sskniktpry svlitaekpl
      601 tdqsnpngtt riislnqdsv vrleewtdqt rvdgvvlekv qenefryrmy qtqisdagly
      661 rcvvtawspg gggmwreavn glsnpiqidf qtsgpvfnvs vhsdnptvyq geladllciv
      721 ttegmplepd dmsfdvswfa vrsfaldrep vllasvdrrg ivtqsrrngs sdlslerisp
      781 lefrlrvhgc edhdfgnhyc ivtpwvrsat gvwqrepdik akpiflsvkm dvlnafkypl
      841 ligfglatvi gllscligyc ssrwcckkev qetrrerrrl msmemd
//
LOCUS       XP_053909841             748 aa            linear   VRT 09-MAR-2023
DEFINITION  prostaglandin F2 receptor negative regulator isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053909841
VERSION     XP_053909841.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053866.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..748
                     /product="prostaglandin F2 receptor negative regulator
                     isoform X3"
                     /calculated_mol_wt=84177
     Region          46..127
                     /region_name="IGv"
                     /note="Immunoglobulin V-Type; smart00406"
                     /db_xref="CDD:214650"
     Region          46..50
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409481"
     Region          62..66
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409481"
     Region          107..112
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409481"
     Region          122..127
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409481"
     Region          142..145
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409481"
     Region          289..398
                     /region_name="IgV"
                     /note="Immunoglobulin variable domain (IgV); cd00099"
                     /db_xref="CDD:409355"
     Region          289..309
                     /region_name="FR1"
                     /note="FR1 [structural motif]"
                     /db_xref="CDD:409355"
     Region          289..292
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409355"
     Region          296..298
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409355"
     Region          302..310
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409355"
     Site            order(316,318,325,327,337,339,379,381,383,392..394)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:409355"
     Region          316..339
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409355"
     Region          316..327
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409355"
     Region          337..340
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409355"
     Region          340..355
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409355"
     Region          355..360
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409355"
     Region          356..384
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409355"
     Region          364..370
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409355"
     Region          378..385
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409355"
     Region          385..391
                     /region_name="CDR3"
                     /note="CDR3 [structural motif]"
                     /db_xref="CDD:409355"
     Region          391..398
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409355"
     Region          462..527
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          467..470
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409394"
     Region          477..481
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409394"
     Region          502..511
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409394"
     Region          521..526
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409394"
     CDS             1..748
                     /gene="PTGFRN"
                     /coded_by="XM_054053866.1:154..2400"
                     /db_xref="GeneID:104056022"
ORIGIN      
        1 mghrgerasc vplllfllll lllafcrgrv vrvpkgplir vmgtevtipc svsdydgpse
       61 qnfdwefsre adfmrivstw dstftsedyq krvgqgdikl rrssndavel viksiqptdq
      121 gtykcstpst datvqgnyda evqvkviadg lsvsgskars stslrlsegd sfklrcsait
      181 tspehthlhv twqirsglsw rdilsltheg kfqpgpgyee ryrngdirld tgandtyrls
      241 vsqassldgg ayrclvsewv rgadgswqki qeksveianv aiqrtaldvv istsnvslte
      301 rdsldltcni ttdrsgifea evmwyfstsp ddtlseaqvl lsvdrdsvvs dstlislsrv
      361 drnsyhllvr dvdvedsgyy fcqaavwvpl hngswhkvve rtsapvsvvv talepdyevf
      421 lnasktpkfs ddptelncri tnaqdteani rftvswyyrq rlrsddvvse ellatmdadw
      481 tlqlgdrsre rthngeiiff kkaadtfslr iqwtsesdrg dyfcvisaws rhrnnswvks
      541 kdvtsasvni fwatqgpvfn vsvhsdnptv yqgeladllc ivttegmple pddmsfdvsw
      601 favrsfaldr epvllasvdr rgivtqsrrn gssdlsleri splefrlrvh gcedhdfgnh
      661 ycivtpwvrs atgvwqrepd ikakpiflsv kmdvlnafky plligfglat vigllsclig
      721 ycssrwcckk evqetrrerr rlmsmemd
//
LOCUS       XP_009561881             763 aa            linear   VRT 09-MAR-2023
DEFINITION  IQ and ubiquitin-like domain-containing protein isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009561881
VERSION     XP_009561881.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563586.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561881.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..763
                     /product="IQ and ubiquitin-like domain-containing protein
                     isoform X1"
                     /calculated_mol_wt=88239
     CDS             1..763
                     /gene="IQUB"
                     /coded_by="XM_009563586.2:1673..3964"
                     /db_xref="GeneID:104061628"
ORIGIN      
        1 mddisdncfe vvitersgak qppassqsra igedengdsa ekpplsevtg taqseegceq
       61 qsaleqsvlr eqkqsglaew ekpgeelgnq evtgknkqdv fvpdasfsas sentspvtge
      121 nystspevrn sereeqtsqn svpseniang tvtgntvedn etlrraranf vetvqaeksc
      181 lgqehfpgka vqqdyhmpev itvrvqtdsd sfqdvvvkie rptyhkpflg gfknkitgve
      241 fhnagsqtip kkrpdkgiei fcretqtvfe knksqqtrnt tstqmtkigl yvsnrtdkli
      301 spgkyltade yhkrrleavi vlqtyfrrwh ainvvqnlre kkrlrlewea qeelrkkkek
      361 eerlrreqeg klnpktkedf ellyqaleiw kqeeterinr tltgaerkaa lcglmeqeaq
      421 liasigrrkl ngdeenrqkm ilrfldkcaq prrwraydgk itemdtsyri harelfeiys
      481 svsrndipkd erisvlltlr rtvekhkckl sqeimelidr efdlmsrevk ecnleglrkr
      541 ictlflryik tplfnpevhk ilkvppdplm lynnvnfcys cenylpstef pvpaisrtmg
      601 rcrscckldn earkrevffk yklilknlrk seadyeddak ivflvqyqdl qymieniwgc
      661 qsalsacrdl ydlvmvrwdk qhewspwnti lltkdeadah lklcnlqeay eaafihrikh
      721 khiraknyft qipamasflh rsnnqvkane fliakpiptg tkt
//
LOCUS       XP_053909856             704 aa            linear   VRT 09-MAR-2023
DEFINITION  IQ and ubiquitin-like domain-containing protein isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053909856
VERSION     XP_053909856.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053881.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..704
                     /product="IQ and ubiquitin-like domain-containing protein
                     isoform X2"
                     /calculated_mol_wt=81082
     CDS             1..704
                     /gene="IQUB"
                     /coded_by="XM_054053881.1:1676..3790"
                     /db_xref="GeneID:104061628"
ORIGIN      
        1 mddisdncfe vvitersgak qppassqsra igedengdsa ekpplsevtg taqseegceq
       61 qsaleqsvlr eqkqsglaew ekpgeelgnq evtgknkqdv fvpdasfsas sentspvtge
      121 nystspevrn sereeqtsqn svpseniang tvtgntvedn etlrraranf vetvqaeksc
      181 lgqehfpgka vqqdyhmpev itvrvqtdsd sfqdvvvkie rptyhkpflg gfknkitgve
      241 fhnagsqtip kkrpdkgiei fcretqtvfe knksqqtrnt tstqmtkigl yvsnrtdkli
      301 spgkyltade yhkrrleavi vlqtyfrrwh ainvvqnlre kkrlrlewea qeelrkkkek
      361 eerlrreqeg klnpktkedf ellyqaleiw kqeeterinr tltgaerkaa lcglmeqeaq
      421 liasigrrkl ngdeenrqkm ilrfldkcaq prrwraydgk itemdtsyri harelfeiys
      481 svsrndipkd erisvlltlr rtvevppdpl mlynnvnfcy scenylpste fpvpaisrtm
      541 grcrscckld nearkrevff kyklilknlr kseadyedda kivflvqyqd lqymieniwg
      601 cqsalsacrd lydlvmvrwd kqhewspwnt illtkdeada hlklcnlqea yeaafihrik
      661 hkhiraknyf tqipamasfl hrsnnqvkan efliakpipt gtkt
//
LOCUS       XP_053909864             554 aa            linear   VRT 09-MAR-2023
DEFINITION  retinoic acid-induced protein 2 [Cuculus canorus].
ACCESSION   XP_053909864
VERSION     XP_053909864.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053889.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..554
                     /product="retinoic acid-induced protein 2"
                     /calculated_mol_wt=57929
     CDS             1..554
                     /gene="RAI2"
                     /coded_by="XM_054053889.1:257..1921"
                     /db_xref="GeneID:104063413"
ORIGIN      
        1 meelykdapn lpmdvtssps vmannkleng vaqlitaeaw ninssdlmkk alsplvtvpa
       61 psiltppaes qsgvalkvaa tvlqpiclgd spvvlpihlq vagsaapqmp atnaatpyvm
      121 ttqgpvplpv lleqhvfqhl nsplvlppga tcpasplhag lfpgtttpvg qpqlldpkps
      181 gqaqepvlpp vfqtpgfaav lqdlfpsqgt lgsapcqppp dyaalppqaf ssplsplvpp
      241 atllvpypvi vplpvpipip ipvpipvphg adtkvapnpp kpplftphsc kgtqtpleke
      301 etkpfdllhp refpqlsrht vikmgsenea ldlsmkgppa lrageaappp ppedgaldls
      361 ltscrkpggp hgevasvsps aaaeasaypa pdklpgpaat fapckpqeas gkvegrgvgg
      421 gssdllrqpq kwlveqagra gcepkagnni eivstsqtak vivsvkdavp tifcgkikgl
      481 sgvstknfsf krdlpqdsvl qcydvksppe prdsaealrk pvknrsvklk kmnspeihil
      541 pikkqrlaaf fprk
//
LOCUS       XP_053909871             554 aa            linear   VRT 09-MAR-2023
DEFINITION  retinoic acid-induced protein 2 [Cuculus canorus].
ACCESSION   XP_053909871
VERSION     XP_053909871.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053896.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..554
                     /product="retinoic acid-induced protein 2"
                     /calculated_mol_wt=57929
     CDS             1..554
                     /gene="RAI2"
                     /coded_by="XM_054053896.1:318..1982"
                     /db_xref="GeneID:104063413"
ORIGIN      
        1 meelykdapn lpmdvtssps vmannkleng vaqlitaeaw ninssdlmkk alsplvtvpa
       61 psiltppaes qsgvalkvaa tvlqpiclgd spvvlpihlq vagsaapqmp atnaatpyvm
      121 ttqgpvplpv lleqhvfqhl nsplvlppga tcpasplhag lfpgtttpvg qpqlldpkps
      181 gqaqepvlpp vfqtpgfaav lqdlfpsqgt lgsapcqppp dyaalppqaf ssplsplvpp
      241 atllvpypvi vplpvpipip ipvpipvphg adtkvapnpp kpplftphsc kgtqtpleke
      301 etkpfdllhp refpqlsrht vikmgsenea ldlsmkgppa lrageaappp ppedgaldls
      361 ltscrkpggp hgevasvsps aaaeasaypa pdklpgpaat fapckpqeas gkvegrgvgg
      421 gssdllrqpq kwlveqagra gcepkagnni eivstsqtak vivsvkdavp tifcgkikgl
      481 sgvstknfsf krdlpqdsvl qcydvksppe prdsaealrk pvknrsvklk kmnspeihil
      541 pikkqrlaaf fprk
//
LOCUS       XP_053909878             554 aa            linear   VRT 09-MAR-2023
DEFINITION  retinoic acid-induced protein 2 [Cuculus canorus].
ACCESSION   XP_053909878
VERSION     XP_053909878.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053903.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..554
                     /product="retinoic acid-induced protein 2"
                     /calculated_mol_wt=57929
     CDS             1..554
                     /gene="RAI2"
                     /coded_by="XM_054053903.1:412..2076"
                     /db_xref="GeneID:104063413"
ORIGIN      
        1 meelykdapn lpmdvtssps vmannkleng vaqlitaeaw ninssdlmkk alsplvtvpa
       61 psiltppaes qsgvalkvaa tvlqpiclgd spvvlpihlq vagsaapqmp atnaatpyvm
      121 ttqgpvplpv lleqhvfqhl nsplvlppga tcpasplhag lfpgtttpvg qpqlldpkps
      181 gqaqepvlpp vfqtpgfaav lqdlfpsqgt lgsapcqppp dyaalppqaf ssplsplvpp
      241 atllvpypvi vplpvpipip ipvpipvphg adtkvapnpp kpplftphsc kgtqtpleke
      301 etkpfdllhp refpqlsrht vikmgsenea ldlsmkgppa lrageaappp ppedgaldls
      361 ltscrkpggp hgevasvsps aaaeasaypa pdklpgpaat fapckpqeas gkvegrgvgg
      421 gssdllrqpq kwlveqagra gcepkagnni eivstsqtak vivsvkdavp tifcgkikgl
      481 sgvstknfsf krdlpqdsvl qcydvksppe prdsaealrk pvknrsvklk kmnspeihil
      541 pikkqrlaaf fprk
//
LOCUS       XP_053909886             554 aa            linear   VRT 09-MAR-2023
DEFINITION  retinoic acid-induced protein 2 [Cuculus canorus].
ACCESSION   XP_053909886
VERSION     XP_053909886.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053911.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..554
                     /product="retinoic acid-induced protein 2"
                     /calculated_mol_wt=57929
     CDS             1..554
                     /gene="RAI2"
                     /coded_by="XM_054053911.1:267..1931"
                     /db_xref="GeneID:104063413"
ORIGIN      
        1 meelykdapn lpmdvtssps vmannkleng vaqlitaeaw ninssdlmkk alsplvtvpa
       61 psiltppaes qsgvalkvaa tvlqpiclgd spvvlpihlq vagsaapqmp atnaatpyvm
      121 ttqgpvplpv lleqhvfqhl nsplvlppga tcpasplhag lfpgtttpvg qpqlldpkps
      181 gqaqepvlpp vfqtpgfaav lqdlfpsqgt lgsapcqppp dyaalppqaf ssplsplvpp
      241 atllvpypvi vplpvpipip ipvpipvphg adtkvapnpp kpplftphsc kgtqtpleke
      301 etkpfdllhp refpqlsrht vikmgsenea ldlsmkgppa lrageaappp ppedgaldls
      361 ltscrkpggp hgevasvsps aaaeasaypa pdklpgpaat fapckpqeas gkvegrgvgg
      421 gssdllrqpq kwlveqagra gcepkagnni eivstsqtak vivsvkdavp tifcgkikgl
      481 sgvstknfsf krdlpqdsvl qcydvksppe prdsaealrk pvknrsvklk kmnspeihil
      541 pikkqrlaaf fprk
//
LOCUS       XP_053909897             362 aa            linear   VRT 09-MAR-2023
DEFINITION  carbohydrate sulfotransferase 10 [Cuculus canorus].
ACCESSION   XP_053909897
VERSION     XP_053909897.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053922.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..362
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..362
                     /product="carbohydrate sulfotransferase 10"
                     /calculated_mol_wt=42316
     Region          122..354
                     /region_name="Sulfotransfer_2"
                     /note="Sulfotransferase family; pfam03567"
                     /db_xref="CDD:427369"
     CDS             1..362
                     /gene="CHST10"
                     /coded_by="XM_054053922.1:32..1120"
                     /db_xref="GeneID:104056646"
ORIGIN      
        1 msdnmhhqwl llaacfwvif mfmvaskfit ltfkdpdgyg akqeplilta vtkveevhvp
       61 eekrwpeefq ptgkafsgnl irqplvhmer lellrnvcrd talrnlshaa vskfvldrif
      121 vcdkhkilfc qtpkvgntqw kkvlivlnga fssieeipen ivhdhekngl prlssfsdse
      181 ikkrldlyfk ffivrdpfer lisafkdkfv hnprfepwyr heiapgiirk yrknrtetkg
      241 lqfedfvryl gdpnhrwldv qfgdhiihwv tyvelcapce iaysvighhe tleddapyil
      301 kaagidhlvs yptippgitv ynktkvaryf sgiskrdirr lyarfegdfk lfgyrepdfl
      361 ln
//
LOCUS       XP_053909911             277 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: fructose-2,6-bisphosphatase TIGAR [Cuculus
            canorus].
ACCESSION   XP_053909911
VERSION     XP_053909911.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053936.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..277
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..277
                     /product="LOW QUALITY PROTEIN: fructose-2,6-bisphosphatase
                     TIGAR"
                     /calculated_mol_wt=30287
     Region          6..211
                     /region_name="His_Phos_1"
                     /note="Histidine phosphatase superfamily (branch 1);
                     pfam00300"
                     /db_xref="CDD:459751"
     CDS             1..277
                     /gene="TIGAR"
                     /coded_by="XM_054053936.1:95..928"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /db_xref="GeneID:104066637"
ORIGIN      
        1 mvcfgltvvr hgetrynkdk ilqgqgvdep lsatgfrqad aagsflsnvk fthvfssdll
       61 rakqtaaail gknkfckdle ikydarlrer kygvaegrpl tdlkamakaa geqcpsftps
      121 ggetldevke rardffeflc qlavelehke qdsaasrssg aceeqfvfpw tnhcseteln
      181 sgkseasnvl danilvvshg aymrswlsyf isdlnctlpi nltksqlssv spntgvshfi
      241 vklqngdllk peivcvclnq dshlvdvgae pvatkvf
//
LOCUS       XP_053909950             401 aa            linear   VRT 09-MAR-2023
DEFINITION  splicing factor 45 isoform X1 [Cuculus canorus].
ACCESSION   XP_053909950
VERSION     XP_053909950.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053975.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..401
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..401
                     /product="splicing factor 45 isoform X1"
                     /calculated_mol_wt=44712
     Region          235..279
                     /region_name="G-patch"
                     /note="G-patch domain; pfam01585"
                     /db_xref="CDD:396249"
     Region          303..397
                     /region_name="RRM_UHM_SPF45"
                     /note="RNA recognition motif (RRM) found in UHM domain of
                     45 kDa-splicing factor (SPF45) and similar proteins;
                     cd12647"
                     /db_xref="CDD:410051"
     CDS             1..401
                     /gene="RBM17"
                     /coded_by="XM_054053975.1:40..1245"
                     /db_xref="GeneID:104065018"
ORIGIN      
        1 mslyddlgve tsdsktegws knfkllqsql qvkkaaltqa ksqrtkqttv lapvidlkrg
       61 sssderqivd tpphvaaglk dpvpsgfsag dvlipladey dpmfpndyek vvkrqreerq
      121 rqrelerqke ieerekrrkd rheasgfsrr pdpdsdeded yererrkrsm ggaaiappts
      181 lvekdkepva sfpfeeesrp rapsskaaip ppvydeperp rsptgpsnsf lanmggtvah
      241 kimqkygfre gqglgkheqg lstalsvekt skrggkiivg esteketgkk adsnplteil
      301 kcptkvvllr nmvgagevde dlevetkeec ekygkvgkcv ifeipgapdd eavriflefe
      361 rvesaikavv dlngryfggr vvkacfynld kfrvldlaeq v
//
LOCUS       XP_053909960             401 aa            linear   VRT 09-MAR-2023
DEFINITION  splicing factor 45 isoform X1 [Cuculus canorus].
ACCESSION   XP_053909960
VERSION     XP_053909960.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053985.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..401
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..401
                     /product="splicing factor 45 isoform X1"
                     /calculated_mol_wt=44712
     Region          235..279
                     /region_name="G-patch"
                     /note="G-patch domain; pfam01585"
                     /db_xref="CDD:396249"
     Region          303..397
                     /region_name="RRM_UHM_SPF45"
                     /note="RNA recognition motif (RRM) found in UHM domain of
                     45 kDa-splicing factor (SPF45) and similar proteins;
                     cd12647"
                     /db_xref="CDD:410051"
     CDS             1..401
                     /gene="RBM17"
                     /coded_by="XM_054053985.1:72..1277"
                     /db_xref="GeneID:104065018"
ORIGIN      
        1 mslyddlgve tsdsktegws knfkllqsql qvkkaaltqa ksqrtkqttv lapvidlkrg
       61 sssderqivd tpphvaaglk dpvpsgfsag dvlipladey dpmfpndyek vvkrqreerq
      121 rqrelerqke ieerekrrkd rheasgfsrr pdpdsdeded yererrkrsm ggaaiappts
      181 lvekdkepva sfpfeeesrp rapsskaaip ppvydeperp rsptgpsnsf lanmggtvah
      241 kimqkygfre gqglgkheqg lstalsvekt skrggkiivg esteketgkk adsnplteil
      301 kcptkvvllr nmvgagevde dlevetkeec ekygkvgkcv ifeipgapdd eavriflefe
      361 rvesaikavv dlngryfggr vvkacfynld kfrvldlaeq v
//
LOCUS       XP_053909968             400 aa            linear   VRT 09-MAR-2023
DEFINITION  splicing factor 45 isoform X2 [Cuculus canorus].
ACCESSION   XP_053909968
VERSION     XP_053909968.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054053993.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..400
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..400
                     /product="splicing factor 45 isoform X2"
                     /calculated_mol_wt=44555
     Region          234..278
                     /region_name="G-patch"
                     /note="G-patch domain; pfam01585"
                     /db_xref="CDD:396249"
     Region          302..396
                     /region_name="RRM_UHM_SPF45"
                     /note="RNA recognition motif (RRM) found in UHM domain of
                     45 kDa-splicing factor (SPF45) and similar proteins;
                     cd12647"
                     /db_xref="CDD:410051"
     CDS             1..400
                     /gene="RBM17"
                     /coded_by="XM_054053993.1:91..1293"
                     /db_xref="GeneID:104065018"
ORIGIN      
        1 mslyddlgve tsdsktegws knfkllqsql qvkkaaltqa ksqrtkqttv lapvidlkrg
       61 sssderqivd tpphvaaglk dpvpsgfsag dvlipladey dpmfpndyek vvkrqreerq
      121 rqrelerqke ieerekrkdr heasgfsrrp dpdsdededy ererrkrsmg gaaiapptsl
      181 vekdkepvas fpfeeesrpr apsskaaipp pvydeperpr sptgpsnsfl anmggtvahk
      241 imqkygfreg qglgkheqgl stalsvekts krggkiivge steketgkka dsnplteilk
      301 cptkvvllrn mvgagevded levetkeece kygkvgkcvi feipgapdde avriflefer
      361 vesaikavvd lngryfggrv vkacfynldk frvldlaeqv
//
LOCUS       XP_053909990             330 aa            linear   VRT 09-MAR-2023
DEFINITION  P2Y purinoceptor 6 [Cuculus canorus].
ACCESSION   XP_053909990
VERSION     XP_053909990.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054015.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..330
                     /product="P2Y purinoceptor 6"
                     /calculated_mol_wt=37558
     Region          24..309
                     /region_name="7tmA_P2Y6"
                     /note="P2Y purinoceptor 6, member of the class A family of
                     seven-transmembrane G protein-coupled receptors; cd15379"
                     /db_xref="CDD:320501"
     Region          24..51
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320501"
     Region          58..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320501"
     Site            order(79,82..83,96..101,103..104,107,153,155..159,173,
                     175..177,186,189..191,193..195,197..198,249,252..253,
                     255..256,259,276..277,279..281,284,287..288)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320501"
     Region          96..126
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320501"
     Region          139..161
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320501"
     Region          186..215
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320501"
     Region          229..259
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320501"
     Region          277..302
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320501"
     CDS             1..330
                     /gene="P2RY6"
                     /coded_by="XM_054054015.1:444..1436"
                     /db_xref="GeneID:104064116"
ORIGIN      
        1 manltapvgp grnsctfhee fkqvllplvy svvftvglpl navvigqiwv arkalsrsmi
       61 ymlnlamadl lyvcslplli ynytqkdywp fgdftckfvr fqfytnlhgs iffltcisiq
      121 rylgichpla swhkkkgkkl twlvcaavwf iviaqclptf ifastgtqrn rtvcydlspp
      181 dhsaayfpyg itltvtgfll pfvailacyc smarilcqkd eliglavhkr kdkavrmiii
      241 vvivfsisff pfhltktiyl ivrsspslsc ptlqafaiay kctrpfasmn svldpilfyf
      301 tqrkfrestr ylldkvsskw rhdhcitygs
//
LOCUS       XP_053909999             330 aa            linear   VRT 09-MAR-2023
DEFINITION  P2Y purinoceptor 6 [Cuculus canorus].
ACCESSION   XP_053909999
VERSION     XP_053909999.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054024.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..330
                     /product="P2Y purinoceptor 6"
                     /calculated_mol_wt=37558
     Region          24..309
                     /region_name="7tmA_P2Y6"
                     /note="P2Y purinoceptor 6, member of the class A family of
                     seven-transmembrane G protein-coupled receptors; cd15379"
                     /db_xref="CDD:320501"
     Region          24..51
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320501"
     Region          58..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320501"
     Site            order(79,82..83,96..101,103..104,107,153,155..159,173,
                     175..177,186,189..191,193..195,197..198,249,252..253,
                     255..256,259,276..277,279..281,284,287..288)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320501"
     Region          96..126
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320501"
     Region          139..161
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320501"
     Region          186..215
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320501"
     Region          229..259
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320501"
     Region          277..302
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320501"
     CDS             1..330
                     /gene="P2RY6"
                     /coded_by="XM_054054024.1:1137..2129"
                     /db_xref="GeneID:104064116"
ORIGIN      
        1 manltapvgp grnsctfhee fkqvllplvy svvftvglpl navvigqiwv arkalsrsmi
       61 ymlnlamadl lyvcslplli ynytqkdywp fgdftckfvr fqfytnlhgs iffltcisiq
      121 rylgichpla swhkkkgkkl twlvcaavwf iviaqclptf ifastgtqrn rtvcydlspp
      181 dhsaayfpyg itltvtgfll pfvailacyc smarilcqkd eliglavhkr kdkavrmiii
      241 vvivfsisff pfhltktiyl ivrsspslsc ptlqafaiay kctrpfasmn svldpilfyf
      301 tqrkfrestr ylldkvsskw rhdhcitygs
//
LOCUS       XP_053910005             330 aa            linear   VRT 09-MAR-2023
DEFINITION  P2Y purinoceptor 6 [Cuculus canorus].
ACCESSION   XP_053910005
VERSION     XP_053910005.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054030.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..330
                     /product="P2Y purinoceptor 6"
                     /calculated_mol_wt=37558
     Region          24..309
                     /region_name="7tmA_P2Y6"
                     /note="P2Y purinoceptor 6, member of the class A family of
                     seven-transmembrane G protein-coupled receptors; cd15379"
                     /db_xref="CDD:320501"
     Region          24..51
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320501"
     Region          58..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320501"
     Site            order(79,82..83,96..101,103..104,107,153,155..159,173,
                     175..177,186,189..191,193..195,197..198,249,252..253,
                     255..256,259,276..277,279..281,284,287..288)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320501"
     Region          96..126
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320501"
     Region          139..161
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320501"
     Region          186..215
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320501"
     Region          229..259
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320501"
     Region          277..302
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320501"
     CDS             1..330
                     /gene="P2RY6"
                     /coded_by="XM_054054030.1:945..1937"
                     /db_xref="GeneID:104064116"
ORIGIN      
        1 manltapvgp grnsctfhee fkqvllplvy svvftvglpl navvigqiwv arkalsrsmi
       61 ymlnlamadl lyvcslplli ynytqkdywp fgdftckfvr fqfytnlhgs iffltcisiq
      121 rylgichpla swhkkkgkkl twlvcaavwf iviaqclptf ifastgtqrn rtvcydlspp
      181 dhsaayfpyg itltvtgfll pfvailacyc smarilcqkd eliglavhkr kdkavrmiii
      241 vvivfsisff pfhltktiyl ivrsspslsc ptlqafaiay kctrpfasmn svldpilfyf
      301 tqrkfrestr ylldkvsskw rhdhcitygs
//
LOCUS       XP_053910013             330 aa            linear   VRT 09-MAR-2023
DEFINITION  P2Y purinoceptor 6 [Cuculus canorus].
ACCESSION   XP_053910013
VERSION     XP_053910013.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054038.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..330
                     /product="P2Y purinoceptor 6"
                     /calculated_mol_wt=37558
     Region          24..309
                     /region_name="7tmA_P2Y6"
                     /note="P2Y purinoceptor 6, member of the class A family of
                     seven-transmembrane G protein-coupled receptors; cd15379"
                     /db_xref="CDD:320501"
     Region          24..51
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320501"
     Region          58..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320501"
     Site            order(79,82..83,96..101,103..104,107,153,155..159,173,
                     175..177,186,189..191,193..195,197..198,249,252..253,
                     255..256,259,276..277,279..281,284,287..288)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320501"
     Region          96..126
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320501"
     Region          139..161
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320501"
     Region          186..215
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320501"
     Region          229..259
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320501"
     Region          277..302
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320501"
     CDS             1..330
                     /gene="P2RY6"
                     /coded_by="XM_054054038.1:2674..3666"
                     /db_xref="GeneID:104064116"
ORIGIN      
        1 manltapvgp grnsctfhee fkqvllplvy svvftvglpl navvigqiwv arkalsrsmi
       61 ymlnlamadl lyvcslplli ynytqkdywp fgdftckfvr fqfytnlhgs iffltcisiq
      121 rylgichpla swhkkkgkkl twlvcaavwf iviaqclptf ifastgtqrn rtvcydlspp
      181 dhsaayfpyg itltvtgfll pfvailacyc smarilcqkd eliglavhkr kdkavrmiii
      241 vvivfsisff pfhltktiyl ivrsspslsc ptlqafaiay kctrpfasmn svldpilfyf
      301 tqrkfrestr ylldkvsskw rhdhcitygs
//
LOCUS       XP_053910021             330 aa            linear   VRT 09-MAR-2023
DEFINITION  P2Y purinoceptor 6 [Cuculus canorus].
ACCESSION   XP_053910021
VERSION     XP_053910021.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054046.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..330
                     /product="P2Y purinoceptor 6"
                     /calculated_mol_wt=37558
     Region          24..309
                     /region_name="7tmA_P2Y6"
                     /note="P2Y purinoceptor 6, member of the class A family of
                     seven-transmembrane G protein-coupled receptors; cd15379"
                     /db_xref="CDD:320501"
     Region          24..51
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320501"
     Region          58..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320501"
     Site            order(79,82..83,96..101,103..104,107,153,155..159,173,
                     175..177,186,189..191,193..195,197..198,249,252..253,
                     255..256,259,276..277,279..281,284,287..288)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320501"
     Region          96..126
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320501"
     Region          139..161
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320501"
     Region          186..215
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320501"
     Region          229..259
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320501"
     Region          277..302
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320501"
     CDS             1..330
                     /gene="P2RY6"
                     /coded_by="XM_054054046.1:1981..2973"
                     /db_xref="GeneID:104064116"
ORIGIN      
        1 manltapvgp grnsctfhee fkqvllplvy svvftvglpl navvigqiwv arkalsrsmi
       61 ymlnlamadl lyvcslplli ynytqkdywp fgdftckfvr fqfytnlhgs iffltcisiq
      121 rylgichpla swhkkkgkkl twlvcaavwf iviaqclptf ifastgtqrn rtvcydlspp
      181 dhsaayfpyg itltvtgfll pfvailacyc smarilcqkd eliglavhkr kdkavrmiii
      241 vvivfsisff pfhltktiyl ivrsspslsc ptlqafaiay kctrpfasmn svldpilfyf
      301 tqrkfrestr ylldkvsskw rhdhcitygs
//
LOCUS       XP_053910040            1171 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger BED domain-containing protein 4 [Cuculus canorus].
ACCESSION   XP_053910040
VERSION     XP_053910040.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054065.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1171
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1171
                     /product="zinc finger BED domain-containing protein 4"
                     /calculated_mol_wt=132056
     Region          116..164
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          285..333
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          456..503
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          558..605
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          1087..1164
                     /region_name="Dimer_Tnp_hAT"
                     /note="hAT family C-terminal dimerization region;
                     pfam05699"
                     /db_xref="CDD:399013"
     CDS             1..1171
                     /gene="ZBED4"
                     /coded_by="XM_054054065.1:674..4189"
                     /db_xref="GeneID:104055273"
ORIGIN      
        1 mdnskadspr tdsnfvlgki nnlkveqeed ninctlermd iktehddfkh adssdeqedk
       61 eknfitnnpg kylstenedd ygslfsqygs tlydvameav tqsllssrni ssrkkspawn
      121 hffisprdst kaicmycmke fsrgknekdl stsclmrhvr rahptvliqe ngsmpgissf
      181 ssptlllapq sadvgdlssm lspiklvkkm askipspdri ieesvpvvss eeisdvsvse
      241 kcskeevtvg sspqlpnnqy ddtvenvaek tvvipkstsg srrrsavwkh fylspldnsk
      301 avcihcmnef srgkngkdlg tsclirhmwr ahrsivlqen gggttippvy ttpptllpsl
      361 lpsdsdlnsv ssspgklvke stsvssspdr aseemhtnlp sgdalvedav lsssddigev
      421 sfvsspekqc eglgplifep tavfqqnkri mkrlksevwh hfslspadsl kavcrycscm
      481 isrgkkgdvg tsclmrhlyr rhpdvignqk sfldaslans pyatlasaec ssskltdlpt
      541 mvshdnqiif pvnskktskl wnhfsicsad stkvvcmhcg rtisrgkkpt nlgtscllrh
      601 lqrfhhnvlk tdvsekvlss stdnhmplnt ellgssnfde tndkfcdshp vakkitslva
      661 emialdlqpy sfvdnigfnr lleylqpqys lpspsyfsrt aipdmydnvk qiiishlkea
      721 esgvihftsg iwmsnqtrey ltltahwvtf essfrpqced yhcsallnvs qidcdyngis
      781 iqkqleywwe twitsiglqi gitvtdnqsi ektlnegdhs svqcfshtvn vivneaiksq
      841 rmvqnllsia rkicerihrs akakeklael qkeyelpqhq liqdvpskwn tsfhmlerli
      901 eqkraidems iecsfwelis cdqwevmqsv chalkpfeaa sremsthmst lsqvipmihi
      961 lnrkiemlfe etmgidtmlk slkeamvsrl sstlhdpryi fatlldpryk tslfteeeae
     1021 qykqdlirel eimsstsddd kpvsngcdig spstnsyged nlwslmgdmk tkdlkerakl
     1081 peemvlsyle eevlehncdp ltywnfkkss wpvlsklavr flgcppsivp serlfntsne
     1141 snnfsqsrlm iehfeklifl kvnlpliyfq y
//
LOCUS       XP_053910046            1171 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger BED domain-containing protein 4 [Cuculus canorus].
ACCESSION   XP_053910046
VERSION     XP_053910046.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054071.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1171
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1171
                     /product="zinc finger BED domain-containing protein 4"
                     /calculated_mol_wt=132056
     Region          116..164
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          285..333
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          456..503
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          558..605
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          1087..1164
                     /region_name="Dimer_Tnp_hAT"
                     /note="hAT family C-terminal dimerization region;
                     pfam05699"
                     /db_xref="CDD:399013"
     CDS             1..1171
                     /gene="ZBED4"
                     /coded_by="XM_054054071.1:912..4427"
                     /db_xref="GeneID:104055273"
ORIGIN      
        1 mdnskadspr tdsnfvlgki nnlkveqeed ninctlermd iktehddfkh adssdeqedk
       61 eknfitnnpg kylstenedd ygslfsqygs tlydvameav tqsllssrni ssrkkspawn
      121 hffisprdst kaicmycmke fsrgknekdl stsclmrhvr rahptvliqe ngsmpgissf
      181 ssptlllapq sadvgdlssm lspiklvkkm askipspdri ieesvpvvss eeisdvsvse
      241 kcskeevtvg sspqlpnnqy ddtvenvaek tvvipkstsg srrrsavwkh fylspldnsk
      301 avcihcmnef srgkngkdlg tsclirhmwr ahrsivlqen gggttippvy ttpptllpsl
      361 lpsdsdlnsv ssspgklvke stsvssspdr aseemhtnlp sgdalvedav lsssddigev
      421 sfvsspekqc eglgplifep tavfqqnkri mkrlksevwh hfslspadsl kavcrycscm
      481 isrgkkgdvg tsclmrhlyr rhpdvignqk sfldaslans pyatlasaec ssskltdlpt
      541 mvshdnqiif pvnskktskl wnhfsicsad stkvvcmhcg rtisrgkkpt nlgtscllrh
      601 lqrfhhnvlk tdvsekvlss stdnhmplnt ellgssnfde tndkfcdshp vakkitslva
      661 emialdlqpy sfvdnigfnr lleylqpqys lpspsyfsrt aipdmydnvk qiiishlkea
      721 esgvihftsg iwmsnqtrey ltltahwvtf essfrpqced yhcsallnvs qidcdyngis
      781 iqkqleywwe twitsiglqi gitvtdnqsi ektlnegdhs svqcfshtvn vivneaiksq
      841 rmvqnllsia rkicerihrs akakeklael qkeyelpqhq liqdvpskwn tsfhmlerli
      901 eqkraidems iecsfwelis cdqwevmqsv chalkpfeaa sremsthmst lsqvipmihi
      961 lnrkiemlfe etmgidtmlk slkeamvsrl sstlhdpryi fatlldpryk tslfteeeae
     1021 qykqdlirel eimsstsddd kpvsngcdig spstnsyged nlwslmgdmk tkdlkerakl
     1081 peemvlsyle eevlehncdp ltywnfkkss wpvlsklavr flgcppsivp serlfntsne
     1141 snnfsqsrlm iehfeklifl kvnlpliyfq y
//
LOCUS       XP_053910056            1171 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger BED domain-containing protein 4 [Cuculus canorus].
ACCESSION   XP_053910056
VERSION     XP_053910056.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054081.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1171
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1171
                     /product="zinc finger BED domain-containing protein 4"
                     /calculated_mol_wt=132056
     Region          116..164
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          285..333
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          456..503
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          558..605
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          1087..1164
                     /region_name="Dimer_Tnp_hAT"
                     /note="hAT family C-terminal dimerization region;
                     pfam05699"
                     /db_xref="CDD:399013"
     CDS             1..1171
                     /gene="ZBED4"
                     /coded_by="XM_054054081.1:3168..6683"
                     /db_xref="GeneID:104055273"
ORIGIN      
        1 mdnskadspr tdsnfvlgki nnlkveqeed ninctlermd iktehddfkh adssdeqedk
       61 eknfitnnpg kylstenedd ygslfsqygs tlydvameav tqsllssrni ssrkkspawn
      121 hffisprdst kaicmycmke fsrgknekdl stsclmrhvr rahptvliqe ngsmpgissf
      181 ssptlllapq sadvgdlssm lspiklvkkm askipspdri ieesvpvvss eeisdvsvse
      241 kcskeevtvg sspqlpnnqy ddtvenvaek tvvipkstsg srrrsavwkh fylspldnsk
      301 avcihcmnef srgkngkdlg tsclirhmwr ahrsivlqen gggttippvy ttpptllpsl
      361 lpsdsdlnsv ssspgklvke stsvssspdr aseemhtnlp sgdalvedav lsssddigev
      421 sfvsspekqc eglgplifep tavfqqnkri mkrlksevwh hfslspadsl kavcrycscm
      481 isrgkkgdvg tsclmrhlyr rhpdvignqk sfldaslans pyatlasaec ssskltdlpt
      541 mvshdnqiif pvnskktskl wnhfsicsad stkvvcmhcg rtisrgkkpt nlgtscllrh
      601 lqrfhhnvlk tdvsekvlss stdnhmplnt ellgssnfde tndkfcdshp vakkitslva
      661 emialdlqpy sfvdnigfnr lleylqpqys lpspsyfsrt aipdmydnvk qiiishlkea
      721 esgvihftsg iwmsnqtrey ltltahwvtf essfrpqced yhcsallnvs qidcdyngis
      781 iqkqleywwe twitsiglqi gitvtdnqsi ektlnegdhs svqcfshtvn vivneaiksq
      841 rmvqnllsia rkicerihrs akakeklael qkeyelpqhq liqdvpskwn tsfhmlerli
      901 eqkraidems iecsfwelis cdqwevmqsv chalkpfeaa sremsthmst lsqvipmihi
      961 lnrkiemlfe etmgidtmlk slkeamvsrl sstlhdpryi fatlldpryk tslfteeeae
     1021 qykqdlirel eimsstsddd kpvsngcdig spstnsyged nlwslmgdmk tkdlkerakl
     1081 peemvlsyle eevlehncdp ltywnfkkss wpvlsklavr flgcppsivp serlfntsne
     1141 snnfsqsrlm iehfeklifl kvnlpliyfq y
//
LOCUS       XP_053910066            1171 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger BED domain-containing protein 4 [Cuculus canorus].
ACCESSION   XP_053910066
VERSION     XP_053910066.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054091.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1171
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1171
                     /product="zinc finger BED domain-containing protein 4"
                     /calculated_mol_wt=132056
     Region          116..164
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          285..333
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          456..503
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          558..605
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          1087..1164
                     /region_name="Dimer_Tnp_hAT"
                     /note="hAT family C-terminal dimerization region;
                     pfam05699"
                     /db_xref="CDD:399013"
     CDS             1..1171
                     /gene="ZBED4"
                     /coded_by="XM_054054091.1:2833..6348"
                     /db_xref="GeneID:104055273"
ORIGIN      
        1 mdnskadspr tdsnfvlgki nnlkveqeed ninctlermd iktehddfkh adssdeqedk
       61 eknfitnnpg kylstenedd ygslfsqygs tlydvameav tqsllssrni ssrkkspawn
      121 hffisprdst kaicmycmke fsrgknekdl stsclmrhvr rahptvliqe ngsmpgissf
      181 ssptlllapq sadvgdlssm lspiklvkkm askipspdri ieesvpvvss eeisdvsvse
      241 kcskeevtvg sspqlpnnqy ddtvenvaek tvvipkstsg srrrsavwkh fylspldnsk
      301 avcihcmnef srgkngkdlg tsclirhmwr ahrsivlqen gggttippvy ttpptllpsl
      361 lpsdsdlnsv ssspgklvke stsvssspdr aseemhtnlp sgdalvedav lsssddigev
      421 sfvsspekqc eglgplifep tavfqqnkri mkrlksevwh hfslspadsl kavcrycscm
      481 isrgkkgdvg tsclmrhlyr rhpdvignqk sfldaslans pyatlasaec ssskltdlpt
      541 mvshdnqiif pvnskktskl wnhfsicsad stkvvcmhcg rtisrgkkpt nlgtscllrh
      601 lqrfhhnvlk tdvsekvlss stdnhmplnt ellgssnfde tndkfcdshp vakkitslva
      661 emialdlqpy sfvdnigfnr lleylqpqys lpspsyfsrt aipdmydnvk qiiishlkea
      721 esgvihftsg iwmsnqtrey ltltahwvtf essfrpqced yhcsallnvs qidcdyngis
      781 iqkqleywwe twitsiglqi gitvtdnqsi ektlnegdhs svqcfshtvn vivneaiksq
      841 rmvqnllsia rkicerihrs akakeklael qkeyelpqhq liqdvpskwn tsfhmlerli
      901 eqkraidems iecsfwelis cdqwevmqsv chalkpfeaa sremsthmst lsqvipmihi
      961 lnrkiemlfe etmgidtmlk slkeamvsrl sstlhdpryi fatlldpryk tslfteeeae
     1021 qykqdlirel eimsstsddd kpvsngcdig spstnsyged nlwslmgdmk tkdlkerakl
     1081 peemvlsyle eevlehncdp ltywnfkkss wpvlsklavr flgcppsivp serlfntsne
     1141 snnfsqsrlm iehfeklifl kvnlpliyfq y
//
LOCUS       XP_053910073            1171 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger BED domain-containing protein 4 [Cuculus canorus].
ACCESSION   XP_053910073
VERSION     XP_053910073.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054098.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1171
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1171
                     /product="zinc finger BED domain-containing protein 4"
                     /calculated_mol_wt=132056
     Region          116..164
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          285..333
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          456..503
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          558..605
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          1087..1164
                     /region_name="Dimer_Tnp_hAT"
                     /note="hAT family C-terminal dimerization region;
                     pfam05699"
                     /db_xref="CDD:399013"
     CDS             1..1171
                     /gene="ZBED4"
                     /coded_by="XM_054054098.1:1162..4677"
                     /db_xref="GeneID:104055273"
ORIGIN      
        1 mdnskadspr tdsnfvlgki nnlkveqeed ninctlermd iktehddfkh adssdeqedk
       61 eknfitnnpg kylstenedd ygslfsqygs tlydvameav tqsllssrni ssrkkspawn
      121 hffisprdst kaicmycmke fsrgknekdl stsclmrhvr rahptvliqe ngsmpgissf
      181 ssptlllapq sadvgdlssm lspiklvkkm askipspdri ieesvpvvss eeisdvsvse
      241 kcskeevtvg sspqlpnnqy ddtvenvaek tvvipkstsg srrrsavwkh fylspldnsk
      301 avcihcmnef srgkngkdlg tsclirhmwr ahrsivlqen gggttippvy ttpptllpsl
      361 lpsdsdlnsv ssspgklvke stsvssspdr aseemhtnlp sgdalvedav lsssddigev
      421 sfvsspekqc eglgplifep tavfqqnkri mkrlksevwh hfslspadsl kavcrycscm
      481 isrgkkgdvg tsclmrhlyr rhpdvignqk sfldaslans pyatlasaec ssskltdlpt
      541 mvshdnqiif pvnskktskl wnhfsicsad stkvvcmhcg rtisrgkkpt nlgtscllrh
      601 lqrfhhnvlk tdvsekvlss stdnhmplnt ellgssnfde tndkfcdshp vakkitslva
      661 emialdlqpy sfvdnigfnr lleylqpqys lpspsyfsrt aipdmydnvk qiiishlkea
      721 esgvihftsg iwmsnqtrey ltltahwvtf essfrpqced yhcsallnvs qidcdyngis
      781 iqkqleywwe twitsiglqi gitvtdnqsi ektlnegdhs svqcfshtvn vivneaiksq
      841 rmvqnllsia rkicerihrs akakeklael qkeyelpqhq liqdvpskwn tsfhmlerli
      901 eqkraidems iecsfwelis cdqwevmqsv chalkpfeaa sremsthmst lsqvipmihi
      961 lnrkiemlfe etmgidtmlk slkeamvsrl sstlhdpryi fatlldpryk tslfteeeae
     1021 qykqdlirel eimsstsddd kpvsngcdig spstnsyged nlwslmgdmk tkdlkerakl
     1081 peemvlsyle eevlehncdp ltywnfkkss wpvlsklavr flgcppsivp serlfntsne
     1141 snnfsqsrlm iehfeklifl kvnlpliyfq y
//
LOCUS       XP_053910082            1171 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger BED domain-containing protein 4 [Cuculus canorus].
ACCESSION   XP_053910082
VERSION     XP_053910082.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054107.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1171
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1171
                     /product="zinc finger BED domain-containing protein 4"
                     /calculated_mol_wt=132056
     Region          116..164
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          285..333
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          456..503
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          558..605
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          1087..1164
                     /region_name="Dimer_Tnp_hAT"
                     /note="hAT family C-terminal dimerization region;
                     pfam05699"
                     /db_xref="CDD:399013"
     CDS             1..1171
                     /gene="ZBED4"
                     /coded_by="XM_054054107.1:3406..6921"
                     /db_xref="GeneID:104055273"
ORIGIN      
        1 mdnskadspr tdsnfvlgki nnlkveqeed ninctlermd iktehddfkh adssdeqedk
       61 eknfitnnpg kylstenedd ygslfsqygs tlydvameav tqsllssrni ssrkkspawn
      121 hffisprdst kaicmycmke fsrgknekdl stsclmrhvr rahptvliqe ngsmpgissf
      181 ssptlllapq sadvgdlssm lspiklvkkm askipspdri ieesvpvvss eeisdvsvse
      241 kcskeevtvg sspqlpnnqy ddtvenvaek tvvipkstsg srrrsavwkh fylspldnsk
      301 avcihcmnef srgkngkdlg tsclirhmwr ahrsivlqen gggttippvy ttpptllpsl
      361 lpsdsdlnsv ssspgklvke stsvssspdr aseemhtnlp sgdalvedav lsssddigev
      421 sfvsspekqc eglgplifep tavfqqnkri mkrlksevwh hfslspadsl kavcrycscm
      481 isrgkkgdvg tsclmrhlyr rhpdvignqk sfldaslans pyatlasaec ssskltdlpt
      541 mvshdnqiif pvnskktskl wnhfsicsad stkvvcmhcg rtisrgkkpt nlgtscllrh
      601 lqrfhhnvlk tdvsekvlss stdnhmplnt ellgssnfde tndkfcdshp vakkitslva
      661 emialdlqpy sfvdnigfnr lleylqpqys lpspsyfsrt aipdmydnvk qiiishlkea
      721 esgvihftsg iwmsnqtrey ltltahwvtf essfrpqced yhcsallnvs qidcdyngis
      781 iqkqleywwe twitsiglqi gitvtdnqsi ektlnegdhs svqcfshtvn vivneaiksq
      841 rmvqnllsia rkicerihrs akakeklael qkeyelpqhq liqdvpskwn tsfhmlerli
      901 eqkraidems iecsfwelis cdqwevmqsv chalkpfeaa sremsthmst lsqvipmihi
      961 lnrkiemlfe etmgidtmlk slkeamvsrl sstlhdpryi fatlldpryk tslfteeeae
     1021 qykqdlirel eimsstsddd kpvsngcdig spstnsyged nlwslmgdmk tkdlkerakl
     1081 peemvlsyle eevlehncdp ltywnfkkss wpvlsklavr flgcppsivp serlfntsne
     1141 snnfsqsrlm iehfeklifl kvnlpliyfq y
//
LOCUS       XP_053910088            1171 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger BED domain-containing protein 4 [Cuculus canorus].
ACCESSION   XP_053910088
VERSION     XP_053910088.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054113.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1171
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1171
                     /product="zinc finger BED domain-containing protein 4"
                     /calculated_mol_wt=132056
     Region          116..164
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          285..333
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          456..503
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          558..605
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          1087..1164
                     /region_name="Dimer_Tnp_hAT"
                     /note="hAT family C-terminal dimerization region;
                     pfam05699"
                     /db_xref="CDD:399013"
     CDS             1..1171
                     /gene="ZBED4"
                     /coded_by="XM_054054113.1:567..4082"
                     /db_xref="GeneID:104055273"
ORIGIN      
        1 mdnskadspr tdsnfvlgki nnlkveqeed ninctlermd iktehddfkh adssdeqedk
       61 eknfitnnpg kylstenedd ygslfsqygs tlydvameav tqsllssrni ssrkkspawn
      121 hffisprdst kaicmycmke fsrgknekdl stsclmrhvr rahptvliqe ngsmpgissf
      181 ssptlllapq sadvgdlssm lspiklvkkm askipspdri ieesvpvvss eeisdvsvse
      241 kcskeevtvg sspqlpnnqy ddtvenvaek tvvipkstsg srrrsavwkh fylspldnsk
      301 avcihcmnef srgkngkdlg tsclirhmwr ahrsivlqen gggttippvy ttpptllpsl
      361 lpsdsdlnsv ssspgklvke stsvssspdr aseemhtnlp sgdalvedav lsssddigev
      421 sfvsspekqc eglgplifep tavfqqnkri mkrlksevwh hfslspadsl kavcrycscm
      481 isrgkkgdvg tsclmrhlyr rhpdvignqk sfldaslans pyatlasaec ssskltdlpt
      541 mvshdnqiif pvnskktskl wnhfsicsad stkvvcmhcg rtisrgkkpt nlgtscllrh
      601 lqrfhhnvlk tdvsekvlss stdnhmplnt ellgssnfde tndkfcdshp vakkitslva
      661 emialdlqpy sfvdnigfnr lleylqpqys lpspsyfsrt aipdmydnvk qiiishlkea
      721 esgvihftsg iwmsnqtrey ltltahwvtf essfrpqced yhcsallnvs qidcdyngis
      781 iqkqleywwe twitsiglqi gitvtdnqsi ektlnegdhs svqcfshtvn vivneaiksq
      841 rmvqnllsia rkicerihrs akakeklael qkeyelpqhq liqdvpskwn tsfhmlerli
      901 eqkraidems iecsfwelis cdqwevmqsv chalkpfeaa sremsthmst lsqvipmihi
      961 lnrkiemlfe etmgidtmlk slkeamvsrl sstlhdpryi fatlldpryk tslfteeeae
     1021 qykqdlirel eimsstsddd kpvsngcdig spstnsyged nlwslmgdmk tkdlkerakl
     1081 peemvlsyle eevlehncdp ltywnfkkss wpvlsklavr flgcppsivp serlfntsne
     1141 snnfsqsrlm iehfeklifl kvnlpliyfq y
//
LOCUS       XP_053910096             535 aa            linear   VRT 09-MAR-2023
DEFINITION  dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053910096
VERSION     XP_053910096.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054121.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..535
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..535
                     /product="dol-P-Man:Man(7)GlcNAc(2)-PP-Dol
                     alpha-1,6-mannosyltransferase isoform X1"
                     /calculated_mol_wt=61202
     Region          61..401
                     /region_name="PMT_2"
                     /note="Dolichyl-phosphate-mannose-protein
                     mannosyltransferase; cl21590"
                     /db_xref="CDD:473917"
     CDS             1..535
                     /gene="ALG12"
                     /coded_by="XM_054054121.1:1610..3217"
                     /db_xref="GeneID:104055274"
ORIGIN      
        1 mlpyracegv kyrlcrqiqh avwlpncnif ilksvwkiiy vdfkpkmaqk rsssgrsfpl
       61 llliivafvh ltvcpftkve esfnlqaihd vvyhqldldk ydhhefpgvv prtflgpifi
      121 aalsspaiyv lsvlrmskfy sqlivrgslg lsviytlwkl qkevrkqfga ttstvfclit
      181 vtqfhfmfyc trtlpnvfal pfvllaltyw iqqkqrpfiw fsalaiivfr selciflglm
      241 llvtlltkri sifkvfshav pagifwlgvt vavdslfwrq lvwpegkvlw yntilnksss
      301 wgtspflwyf ysalpralgc siifvplgva ekrtrilllp algfiflysf lphkelrfii
      361 ytfpvfniva akmcsrilnn yrkswlyklg sffvimhllv naaysgtsly vshfnypggv
      421 aiqklhelvp stadvsvhid vaaaqtgvsr fleinsdwry dkredvkpgd qlmfsythil
      481 metnplqish yktthrplan ipgistigln ltalppftln lkpklvllek lplss
//
LOCUS       XP_053910107             489 aa            linear   VRT 09-MAR-2023
DEFINITION  dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase
            isoform X2 [Cuculus canorus].
ACCESSION   XP_053910107
VERSION     XP_053910107.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054132.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..489
                     /product="dol-P-Man:Man(7)GlcNAc(2)-PP-Dol
                     alpha-1,6-mannosyltransferase isoform X2"
                     /calculated_mol_wt=55637
     Region          15..355
                     /region_name="PMT_2"
                     /note="Dolichyl-phosphate-mannose-protein
                     mannosyltransferase; cl21590"
                     /db_xref="CDD:473917"
     CDS             1..489
                     /gene="ALG12"
                     /coded_by="XM_054054132.1:160..1629"
                     /db_xref="GeneID:104055274"
ORIGIN      
        1 maqkrsssgr sfplllliiv afvhltvcpf tkveesfnlq aihdvvyhql dldkydhhef
       61 pgvvprtflg pifiaalssp aiyvlsvlrm skfysqlivr gslglsviyt lwklqkevrk
      121 qfgattstvf clitvtqfhf mfyctrtlpn vfalpfvlla ltywiqqkqr pfiwfsalai
      181 ivfrselcif lglmllvtll tkrisifkvf shavpagifw lgvtvavdsl fwrqlvwpeg
      241 kvlwyntiln kssswgtspf lwyfysalpr algcsiifvp lgvaekrtri lllpalgfif
      301 lysflphkel rfiiytfpvf nivaakmcsr ilnnyrkswl yklgsffvim hllvnaaysg
      361 tslyvshfny pggvaiqklh elvpstadvs vhidvaaaqt gvsrfleins dwrydkredv
      421 kpgdqlmfsy thilmetnpl qishyktthr planipgist iglnltalpp ftlnlkpklv
      481 lleklplss
//
LOCUS       XP_053910119             356 aa            linear   VRT 09-MAR-2023
DEFINITION  protein disulfide isomerase CRELD2 [Cuculus canorus].
ACCESSION   XP_053910119
VERSION     XP_053910119.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054144.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..356
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..356
                     /product="protein disulfide isomerase CRELD2"
                     /calculated_mol_wt=38605
     Region          33..129
                     /region_name="DUF3456"
                     /note="TLR4 regulator and MIR-interacting MSAP; pfam11938"
                     /db_xref="CDD:463404"
     Region          256..291
                     /region_name="FU"
                     /note="Furin-like repeats; smart00261"
                     /db_xref="CDD:214589"
     Region          291..323
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF domain; pfam07645"
                     /db_xref="CDD:429571"
     CDS             1..356
                     /gene="CRELD2"
                     /coded_by="XM_054054144.1:81..1151"
                     /db_xref="GeneID:104055286"
ORIGIN      
        1 mgpgpawrla lcaalllllp patglverrr gacstcrgiv drfnqgladt akknfgggnt
       61 aweektlsky esseirlvei tenlcdssnf ecnnmveehe ehiekwwfkl kkkypdlfkw
      121 fcietievcc pagtygpdcl acrggserpc hgnghcdgdg trggdgscsc nkeyagefcl
      181 dcssgyfstm rnethsvcaa chtacktctg ssnkdcqdck egwikneeaa cvdldecass
      241 pckdhqycln tdgsfsckac dascvgctge gpdkcktcas gyikedekct didecnlpek
      301 vclkenqdcv ntsgsykcvc segfedkdgt cvqtvktgee vesettkpsp tghddl
//
LOCUS       XP_053910131             917 aa            linear   VRT 09-MAR-2023
DEFINITION  cytokine receptor common subunit beta [Cuculus canorus].
ACCESSION   XP_053910131
VERSION     XP_053910131.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054156.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..917
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..917
                     /product="cytokine receptor common subunit beta"
                     /calculated_mol_wt=103426
     Region          129..231
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(129,198,219)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(220..221,223..224)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          336..435
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(424..425,427..428)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..917
                     /gene="LOC104065901"
                     /coded_by="XM_054054156.1:524..3277"
                     /db_xref="GeneID:104065901"
ORIGIN      
        1 mkdffillln lylvfnvqai resvpmeslk cyndytsqvt ctwtehleah alvgmvlyqr
       61 dnimmenkem fckrqtendl hepsgsyvhw ichnttnffg igvdqtysfk pnkmlqaeln
      121 vdlfqnvqpl ppqnlsvslm rsrdflltwk aadgsqglgn aleyevtykr qweswekaas
      181 vllsnttrch lrhedlvpgs syiarvrakp wldsgfsgqy sdwstevlwe tpggglqprn
      241 lrclfngadr lmcswevkka ittsvlfglf fratpasaee ecspvhekal phtphvvqsc
      301 eipvtnsssq shyhvsvrak teekvieayk nikvlppanv svtvtenqey elrwikhnlp
      361 ysfikqryqv eywksnqyen tqklnissde ppfiftlqml dpsteykgkm rarvntpldy
      421 egpwsewsee ftwktenvlp svvlpvvfpa viitllivsy csykyflrkk kmweekipnp
      481 skslliqsyl gkvhlgnrpt ssqldinkys lsdkmeqasi lqvmdrqmkt sskspegqii
      541 ktdvlpvald qqnsyhalne pehtpvacss qiaahsvrvs rrssadasia sqaaipcfaf
      601 ngpylyssmm ssqpdvrhtl avdpvgihgk svslqymalp kedspqapqr qehpgagppq
      661 pfllpnekhi mqhlnnekev spappaygkg vnvrteeqks pavlscpley ittesllrps
      721 asdsslpplv tagelphdtq vpqppndhsc heffpgktdv mvpvsgqapt sspelhlntf
      781 gdyltvplsl hghseptkts lpvlekgsdl prkqplsegn lvvlnpdspe pvflcqvgdy
      841 cfhslksgvk idvsqeehev kkpsegkmip vkpvsdnesi ngkekeiskm qaiqlfknlk
      901 sddyfswhqs lrireic
//
LOCUS       XP_053910140             917 aa            linear   VRT 09-MAR-2023
DEFINITION  cytokine receptor common subunit beta [Cuculus canorus].
ACCESSION   XP_053910140
VERSION     XP_053910140.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054165.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..917
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..917
                     /product="cytokine receptor common subunit beta"
                     /calculated_mol_wt=103426
     Region          129..231
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(129,198,219)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(220..221,223..224)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          336..435
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(424..425,427..428)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..917
                     /gene="LOC104065901"
                     /coded_by="XM_054054165.1:387..3140"
                     /db_xref="GeneID:104065901"
ORIGIN      
        1 mkdffillln lylvfnvqai resvpmeslk cyndytsqvt ctwtehleah alvgmvlyqr
       61 dnimmenkem fckrqtendl hepsgsyvhw ichnttnffg igvdqtysfk pnkmlqaeln
      121 vdlfqnvqpl ppqnlsvslm rsrdflltwk aadgsqglgn aleyevtykr qweswekaas
      181 vllsnttrch lrhedlvpgs syiarvrakp wldsgfsgqy sdwstevlwe tpggglqprn
      241 lrclfngadr lmcswevkka ittsvlfglf fratpasaee ecspvhekal phtphvvqsc
      301 eipvtnsssq shyhvsvrak teekvieayk nikvlppanv svtvtenqey elrwikhnlp
      361 ysfikqryqv eywksnqyen tqklnissde ppfiftlqml dpsteykgkm rarvntpldy
      421 egpwsewsee ftwktenvlp svvlpvvfpa viitllivsy csykyflrkk kmweekipnp
      481 skslliqsyl gkvhlgnrpt ssqldinkys lsdkmeqasi lqvmdrqmkt sskspegqii
      541 ktdvlpvald qqnsyhalne pehtpvacss qiaahsvrvs rrssadasia sqaaipcfaf
      601 ngpylyssmm ssqpdvrhtl avdpvgihgk svslqymalp kedspqapqr qehpgagppq
      661 pfllpnekhi mqhlnnekev spappaygkg vnvrteeqks pavlscpley ittesllrps
      721 asdsslpplv tagelphdtq vpqppndhsc heffpgktdv mvpvsgqapt sspelhlntf
      781 gdyltvplsl hghseptkts lpvlekgsdl prkqplsegn lvvlnpdspe pvflcqvgdy
      841 cfhslksgvk idvsqeehev kkpsegkmip vkpvsdnesi ngkekeiskm qaiqlfknlk
      901 sddyfswhqs lrireic
//
LOCUS       XP_053910151             917 aa            linear   VRT 09-MAR-2023
DEFINITION  cytokine receptor common subunit beta [Cuculus canorus].
ACCESSION   XP_053910151
VERSION     XP_053910151.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054176.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..917
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..917
                     /product="cytokine receptor common subunit beta"
                     /calculated_mol_wt=103426
     Region          129..231
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(129,198,219)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(220..221,223..224)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          336..435
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(424..425,427..428)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..917
                     /gene="LOC104065901"
                     /coded_by="XM_054054176.1:384..3137"
                     /db_xref="GeneID:104065901"
ORIGIN      
        1 mkdffillln lylvfnvqai resvpmeslk cyndytsqvt ctwtehleah alvgmvlyqr
       61 dnimmenkem fckrqtendl hepsgsyvhw ichnttnffg igvdqtysfk pnkmlqaeln
      121 vdlfqnvqpl ppqnlsvslm rsrdflltwk aadgsqglgn aleyevtykr qweswekaas
      181 vllsnttrch lrhedlvpgs syiarvrakp wldsgfsgqy sdwstevlwe tpggglqprn
      241 lrclfngadr lmcswevkka ittsvlfglf fratpasaee ecspvhekal phtphvvqsc
      301 eipvtnsssq shyhvsvrak teekvieayk nikvlppanv svtvtenqey elrwikhnlp
      361 ysfikqryqv eywksnqyen tqklnissde ppfiftlqml dpsteykgkm rarvntpldy
      421 egpwsewsee ftwktenvlp svvlpvvfpa viitllivsy csykyflrkk kmweekipnp
      481 skslliqsyl gkvhlgnrpt ssqldinkys lsdkmeqasi lqvmdrqmkt sskspegqii
      541 ktdvlpvald qqnsyhalne pehtpvacss qiaahsvrvs rrssadasia sqaaipcfaf
      601 ngpylyssmm ssqpdvrhtl avdpvgihgk svslqymalp kedspqapqr qehpgagppq
      661 pfllpnekhi mqhlnnekev spappaygkg vnvrteeqks pavlscpley ittesllrps
      721 asdsslpplv tagelphdtq vpqppndhsc heffpgktdv mvpvsgqapt sspelhlntf
      781 gdyltvplsl hghseptkts lpvlekgsdl prkqplsegn lvvlnpdspe pvflcqvgdy
      841 cfhslksgvk idvsqeehev kkpsegkmip vkpvsdnesi ngkekeiskm qaiqlfknlk
      901 sddyfswhqs lrireic
//
LOCUS       XP_053910163             144 aa            linear   VRT 09-MAR-2023
DEFINITION  eukaryotic translation initiation factor 1A, X-chromosomal [Cuculus
            canorus].
ACCESSION   XP_053910163
VERSION     XP_053910163.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054188.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..144
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..144
                     /product="eukaryotic translation initiation factor 1A,
                     X-chromosomal"
                     /calculated_mol_wt=16311
     Region          1..131
                     /region_name="PTZ00329"
                     /note="eukaryotic translation initiation factor 1A;
                     Provisional"
                     /db_xref="CDD:185558"
     Site            order(41..42,46,60..63,66,71)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:240219"
     CDS             1..144
                     /gene="EIF1AX"
                     /coded_by="XM_054054188.1:162..596"
                     /db_xref="GeneID:104063407"
ORIGIN      
        1 mpknkgkggk nrrrgknene sekrelvfke dgqeyaqvik mlgngrleal cfdgvkrlch
       61 irgklrkkvw intsdiilvg lrdyqdnkad vilkynadea rslkaygelp ehakinetdt
      121 fgpgdddeiq fddigddded iddi
//
LOCUS       XP_053910173             121 aa            linear   VRT 09-MAR-2023
DEFINITION  cAMP-responsive element-binding protein-like 2 [Cuculus canorus].
ACCESSION   XP_053910173
VERSION     XP_053910173.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054198.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..121
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..121
                     /product="cAMP-responsive element-binding protein-like 2"
                     /calculated_mol_wt=13578
     Region          25..80
                     /region_name="bZIP_CREBL2"
                     /note="Basic leucine zipper (bZIP) domain of Cyclic
                     AMP-responsive element-binding protein-like 2 (CREBL2): a
                     DNA-binding and dimerization domain; cd14709"
                     /db_xref="CDD:269857"
     Region          26..77
                     /region_name="coiled coil"
                     /note="coiled coil [structural motif]"
                     /db_xref="CDD:269857"
     Site            order(29..30,32..34,36..41,43..45)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:269857"
     Site            order(44,47..48,51..52,54..55,58..59,61..62,65..66,68..69,
                     72..73,75..76)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:269857"
     CDS             1..121
                     /gene="CREBL2"
                     /coded_by="XM_054054198.1:122..487"
                     /db_xref="GeneID:104066607"
ORIGIN      
        1 mddskvvggk vkkpgkrgrk pakidlkakl ersrqsarec rarkklryqy leelvssrer
       61 aicalreele mykqwcmamd qgkipseika lltgeelgka qqnstklaka gkteangsnp
      121 w
//
LOCUS       XP_009555453             199 aa            linear   VRT 09-MAR-2023
DEFINITION  transgelin-3 [Cuculus canorus].
ACCESSION   XP_009555453
VERSION     XP_009555453.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557158.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..199
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..199
                     /product="transgelin-3"
                     /calculated_mol_wt=22358
     Region          23..141
                     /region_name="CH_TAGLN3"
                     /note="calponin homology (CH) domain found in
                     transgelin-3; cd21281"
                     /db_xref="CDD:409130"
     Site            order(26,30,88,90..91,94..95,97,107..115,121,123..124,
                     126..127,130..131,134)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409130"
     Region          174..198
                     /region_name="Calponin"
                     /note="Calponin family repeat; pfam00402"
                     /db_xref="CDD:459803"
     CDS             1..199
                     /gene="TAGLN3"
                     /coded_by="XM_009557158.2:392..991"
                     /db_xref="GeneID:104055962"
ORIGIN      
        1 manrgpsygl srevqekieq kydpelesrl vnwiivqcge qiehpppgrq hfqtwlmdgt
       61 llcklinslh pkgnepiaki seskmafkqm eqisqflkaa eiygvrttdi fqtvdlwegk
      121 dmaavqrtlm algslavtkd dgcykgdpsw fhrkaqqnrr gfseeqlrqg qnviglqmgs
      181 nkgasqsgmt gygmprqii
//
LOCUS       XP_009555454             199 aa            linear   VRT 09-MAR-2023
DEFINITION  transgelin-3 [Cuculus canorus].
ACCESSION   XP_009555454
VERSION     XP_009555454.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557159.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..199
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..199
                     /product="transgelin-3"
                     /calculated_mol_wt=22358
     Region          23..141
                     /region_name="CH_TAGLN3"
                     /note="calponin homology (CH) domain found in
                     transgelin-3; cd21281"
                     /db_xref="CDD:409130"
     Site            order(26,30,88,90..91,94..95,97,107..115,121,123..124,
                     126..127,130..131,134)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409130"
     Region          174..198
                     /region_name="Calponin"
                     /note="Calponin family repeat; pfam00402"
                     /db_xref="CDD:459803"
     CDS             1..199
                     /gene="TAGLN3"
                     /coded_by="XM_009557159.2:442..1041"
                     /db_xref="GeneID:104055962"
ORIGIN      
        1 manrgpsygl srevqekieq kydpelesrl vnwiivqcge qiehpppgrq hfqtwlmdgt
       61 llcklinslh pkgnepiaki seskmafkqm eqisqflkaa eiygvrttdi fqtvdlwegk
      121 dmaavqrtlm algslavtkd dgcykgdpsw fhrkaqqnrr gfseeqlrqg qnviglqmgs
      181 nkgasqsgmt gygmprqii
//
LOCUS       XP_053910195             828 aa            linear   VRT 09-MAR-2023
DEFINITION  periostin isoform X1 [Cuculus canorus].
ACCESSION   XP_053910195
VERSION     XP_053910195.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054220.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..828
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..828
                     /product="periostin isoform X1"
                     /calculated_mol_wt=92618
     Region          110..233
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     Region          246..368
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     Region          383..495
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     Region          508..631
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     CDS             1..828
                     /gene="POSTN"
                     /coded_by="XM_054054220.1:140..2626"
                     /db_xref="GeneID:104066127"
ORIGIN      
        1 mkifflftfs tfllsafeqv aasahydkil thsrirardq gpnvcalqqv mgtkkkyfst
       61 crnwyqgaic gkkatvlyec cpgymkmdgt rgcpavapid hvygtlgivg atttqqysdi
      121 srlreeiegr gsftffapsn eaweqlnsei rrnlldnvni elynalhhhm vnkrmltkdl
      181 kngmtlvsmy ndqkllinhy pngvvtvnca riihgnqiat ngvvhvidrv ltpvgntiqd
      241 fieveddlss lraaaitsdv ldilgrpghy tvfaptneaf erlprgvler imgdkvasea
      301 lvkfhilntl qcseaitgga vyetlegntl evgcdgeslt vngvkmvkrk divtsngvih
      361 liddvlipds akqvielgga qqttftdlva qlglasslrp egqytllapl ngafsddtlr
      421 mdqrllktil qnhiikvkig lnelyngqel etiggkllrv fvyrtavcve nscmirgske
      481 grngfihilr qiinpaektl hemlrndkrf siflslvkaa dlddvlsrpg ewtlfvptnd
      541 afkgltdddk dilirdknal rnillyhltq gvfigsgfep gvtnilktiq ggklylktvn
      601 dtllvnelks repdlmatng vihvidklly padlpvgndq lltilkklik yiqikfvrds
      661 tfkeipltfy kiniiesnvq piirkedpsi tqltkliege pefkivrege titkvihgdp
      721 iiktytkiid grpvevtekk vteeriiqgp eikytritag gsdneeklkk lleeevtkvt
      781 kfiegdghll edeeikrllq geaparkvql arrtqggtar rrtrlvys
//
LOCUS       XP_053910201             801 aa            linear   VRT 09-MAR-2023
DEFINITION  periostin isoform X2 [Cuculus canorus].
ACCESSION   XP_053910201
VERSION     XP_053910201.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054226.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..801
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..801
                     /product="periostin isoform X2"
                     /calculated_mol_wt=89539
     Region          110..233
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     Region          246..368
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     Region          383..495
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     Region          508..631
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     CDS             1..801
                     /gene="POSTN"
                     /coded_by="XM_054054226.1:125..2530"
                     /db_xref="GeneID:104066127"
ORIGIN      
        1 mkifflftfs tfllsafeqv aasahydkil thsrirardq gpnvcalqqv mgtkkkyfst
       61 crnwyqgaic gkkatvlyec cpgymkmdgt rgcpavapid hvygtlgivg atttqqysdi
      121 srlreeiegr gsftffapsn eaweqlnsei rrnlldnvni elynalhhhm vnkrmltkdl
      181 kngmtlvsmy ndqkllinhy pngvvtvnca riihgnqiat ngvvhvidrv ltpvgntiqd
      241 fieveddlss lraaaitsdv ldilgrpghy tvfaptneaf erlprgvler imgdkvasea
      301 lvkfhilntl qcseaitgga vyetlegntl evgcdgeslt vngvkmvkrk divtsngvih
      361 liddvlipds akqvielgga qqttftdlva qlglasslrp egqytllapl ngafsddtlr
      421 mdqrllktil qnhiikvkig lnelyngqel etiggkllrv fvyrtavcve nscmirgske
      481 grngfihilr qiinpaektl hemlrndkrf siflslvkaa dlddvlsrpg ewtlfvptnd
      541 afkgltdddk dilirdknal rnillyhltq gvfigsgfep gvtnilktiq ggklylktvn
      601 dtllvnelks repdlmatng vihvidklly padlpvgndq lltilkklik yiqikfvrds
      661 tfkeipltfy kiniiesnvq piirkedpsi tqltkliege pefkivrege titkvihgdp
      721 iiktytkiid grpvevtekk vteeriiqgp eikytritag gsdneeklkk lleeeapark
      781 vqlarrtqgg tarrrtrlvy s
//
LOCUS       XP_053910209             799 aa            linear   VRT 09-MAR-2023
DEFINITION  periostin isoform X3 [Cuculus canorus].
ACCESSION   XP_053910209
VERSION     XP_053910209.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054234.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..799
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..799
                     /product="periostin isoform X3"
                     /calculated_mol_wt=89354
     Region          110..233
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     Region          246..368
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     Region          383..495
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     Region          508..631
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     CDS             1..799
                     /gene="POSTN"
                     /coded_by="XM_054054234.1:138..2537"
                     /db_xref="GeneID:104066127"
ORIGIN      
        1 mkifflftfs tfllsafeqv aasahydkil thsrirardq gpnvcalqqv mgtkkkyfst
       61 crnwyqgaic gkkatvlyec cpgymkmdgt rgcpavapid hvygtlgivg atttqqysdi
      121 srlreeiegr gsftffapsn eaweqlnsei rrnlldnvni elynalhhhm vnkrmltkdl
      181 kngmtlvsmy ndqkllinhy pngvvtvnca riihgnqiat ngvvhvidrv ltpvgntiqd
      241 fieveddlss lraaaitsdv ldilgrpghy tvfaptneaf erlprgvler imgdkvasea
      301 lvkfhilntl qcseaitgga vyetlegntl evgcdgeslt vngvkmvkrk divtsngvih
      361 liddvlipds akqvielgga qqttftdlva qlglasslrp egqytllapl ngafsddtlr
      421 mdqrllktil qnhiikvkig lnelyngqel etiggkllrv fvyrtavcve nscmirgske
      481 grngfihilr qiinpaektl hemlrndkrf siflslvkaa dlddvlsrpg ewtlfvptnd
      541 afkgltdddk dilirdknal rnillyhltq gvfigsgfep gvtnilktiq ggklylktvn
      601 dtllvnelks repdlmatng vihvidklly padlpvgndq lltilkklik yiqikfvrds
      661 tfkeipltfy kiniiesnvq piirkedpii ktytkiidgr pvevtekkvt eeriiqgpei
      721 kytritaggs dneeklkkll eeevtkvtkf iegdghlled eeikrllqga gteytkvtkv
      781 iegepqiier eikkvhleg
//
LOCUS       XP_053910216             783 aa            linear   VRT 09-MAR-2023
DEFINITION  periostin isoform X4 [Cuculus canorus].
ACCESSION   XP_053910216
VERSION     XP_053910216.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054241.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..783
                     /product="periostin isoform X4"
                     /calculated_mol_wt=87477
     Region          110..233
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     Region          246..368
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     Region          383..495
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     Region          508..631
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     CDS             1..783
                     /gene="POSTN"
                     /coded_by="XM_054054241.1:139..2490"
                     /db_xref="GeneID:104066127"
ORIGIN      
        1 mkifflftfs tfllsafeqv aasahydkil thsrirardq gpnvcalqqv mgtkkkyfst
       61 crnwyqgaic gkkatvlyec cpgymkmdgt rgcpavapid hvygtlgivg atttqqysdi
      121 srlreeiegr gsftffapsn eaweqlnsei rrnlldnvni elynalhhhm vnkrmltkdl
      181 kngmtlvsmy ndqkllinhy pngvvtvnca riihgnqiat ngvvhvidrv ltpvgntiqd
      241 fieveddlss lraaaitsdv ldilgrpghy tvfaptneaf erlprgvler imgdkvasea
      301 lvkfhilntl qcseaitgga vyetlegntl evgcdgeslt vngvkmvkrk divtsngvih
      361 liddvlipds akqvielgga qqttftdlva qlglasslrp egqytllapl ngafsddtlr
      421 mdqrllktil qnhiikvkig lnelyngqel etiggkllrv fvyrtavcve nscmirgske
      481 grngfihilr qiinpaektl hemlrndkrf siflslvkaa dlddvlsrpg ewtlfvptnd
      541 afkgltdddk dilirdknal rnillyhltq gvfigsgfep gvtnilktiq ggklylktvn
      601 dtllvnelks repdlmatng vihvidklly padlpvgndq lltilkklik yiqikfvrds
      661 tfkeipltfy npiiktytki idgrpvevte kkvteeriiq gpeikytrit aggsdneekl
      721 kklleeevtk vtkfiegdgh lledeeikrl lqgagteytk vtkviegepq iiereikkvh
      781 leg
//
LOCUS       XP_053910226             857 aa            linear   VRT 09-MAR-2023
DEFINITION  periostin isoform X5 [Cuculus canorus].
ACCESSION   XP_053910226
VERSION     XP_053910226.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054251.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..857
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..857
                     /product="periostin isoform X5"
                     /calculated_mol_wt=95939
     Region          110..233
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     Region          246..368
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     Region          383..495
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     Region          508..631
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     CDS             1..857
                     /gene="POSTN"
                     /coded_by="XM_054054251.1:143..2716"
                     /db_xref="GeneID:104066127"
ORIGIN      
        1 mkifflftfs tfllsafeqv aasahydkil thsrirardq gpnvcalqqv mgtkkkyfst
       61 crnwyqgaic gkkatvlyec cpgymkmdgt rgcpavapid hvygtlgivg atttqqysdi
      121 srlreeiegr gsftffapsn eaweqlnsei rrnlldnvni elynalhhhm vnkrmltkdl
      181 kngmtlvsmy ndqkllinhy pngvvtvnca riihgnqiat ngvvhvidrv ltpvgntiqd
      241 fieveddlss lraaaitsdv ldilgrpghy tvfaptneaf erlprgvler imgdkvasea
      301 lvkfhilntl qcseaitgga vyetlegntl evgcdgeslt vngvkmvkrk divtsngvih
      361 liddvlipds akqvielgga qqttftdlva qlglasslrp egqytllapl ngafsddtlr
      421 mdqrllktil qnhiikvkig lnelyngqel etiggkllrv fvyrtavcve nscmirgske
      481 grngfihilr qiinpaektl hemlrndkrf siflslvkaa dlddvlsrpg ewtlfvptnd
      541 afkgltdddk dilirdknal rnillyhltq gvfigsgfep gvtnilktiq ggklylktvn
      601 dtllvnelks repdlmatng vihvidklly padlpvgndq lltilkklik yiqikfvrds
      661 tfkeipltfy kiniiesnvq piirkedpsi tqltkliege pefkivrege titkvihgdp
      721 iiktytkiid grpvevtekk vteeriiqgp eikytritag gsdneeklkk lleeevtkvt
      781 kfiegdghll edeeikrllq gagteytkvt kviegepqii ereikkvhle eaparkvqla
      841 rrtqggtarr rtrlvys
//
LOCUS       XP_009566991             841 aa            linear   VRT 09-MAR-2023
DEFINITION  periostin isoform X6 [Cuculus canorus].
ACCESSION   XP_009566991
VERSION     XP_009566991.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568696.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..841
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..841
                     /product="periostin isoform X6"
                     /calculated_mol_wt=94062
     Region          110..233
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     Region          246..368
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     Region          383..495
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     Region          508..631
                     /region_name="Fasciclin"
                     /note="Fasciclin domain; pfam02469"
                     /db_xref="CDD:396845"
     CDS             1..841
                     /gene="POSTN"
                     /coded_by="XM_009568696.2:145..2670"
                     /db_xref="GeneID:104066127"
ORIGIN      
        1 mkifflftfs tfllsafeqv aasahydkil thsrirardq gpnvcalqqv mgtkkkyfst
       61 crnwyqgaic gkkatvlyec cpgymkmdgt rgcpavapid hvygtlgivg atttqqysdi
      121 srlreeiegr gsftffapsn eaweqlnsei rrnlldnvni elynalhhhm vnkrmltkdl
      181 kngmtlvsmy ndqkllinhy pngvvtvnca riihgnqiat ngvvhvidrv ltpvgntiqd
      241 fieveddlss lraaaitsdv ldilgrpghy tvfaptneaf erlprgvler imgdkvasea
      301 lvkfhilntl qcseaitgga vyetlegntl evgcdgeslt vngvkmvkrk divtsngvih
      361 liddvlipds akqvielgga qqttftdlva qlglasslrp egqytllapl ngafsddtlr
      421 mdqrllktil qnhiikvkig lnelyngqel etiggkllrv fvyrtavcve nscmirgske
      481 grngfihilr qiinpaektl hemlrndkrf siflslvkaa dlddvlsrpg ewtlfvptnd
      541 afkgltdddk dilirdknal rnillyhltq gvfigsgfep gvtnilktiq ggklylktvn
      601 dtllvnelks repdlmatng vihvidklly padlpvgndq lltilkklik yiqikfvrds
      661 tfkeipltfy npsitqltkl iegepefkiv regetitkvi hgdpiiktyt kiidgrpvev
      721 tekkvteeri iqgpeikytr itaggsdnee klkklleeev tkvtkfiegd ghlledeeik
      781 rllqgagtey tkvtkviege pqiiereikk vhleeapark vqlarrtqgg tarrrtrlvy
      841 s
//
LOCUS       XP_009556948             324 aa            linear   VRT 09-MAR-2023
DEFINITION  2-oxoglutarate receptor 1 [Cuculus canorus].
ACCESSION   XP_009556948
VERSION     XP_009556948.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009558653.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556948.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..324
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..324
                     /product="2-oxoglutarate receptor 1"
                     /calculated_mol_wt=37328
     Region          32..311
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          34..58
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          67..88
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          105..127
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          150..166
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          194..217
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          238..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          279..304
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..324
                     /gene="LOC104057306"
                     /coded_by="XM_009558653.2:1..975"
                     /db_xref="GeneID:104057306"
ORIGIN      
        1 mtsehtnnft alpghtdplt scqdedflqv kfylsifygl vflvcfpgni mtifvyfakm
       61 rpwksstiim lnlavtdlly vatlpffihy sangndwifg nfmckfihfc fyfnlysgii
      121 flsyfslfrf favvhpikal fiqkqrwavv acvvvwiisl aaisplgili atrhkqnrti
      181 cpdlaaaedv dttrwynwll tmfafflpll mvtlcyvlii ytlatgphvq acykqkarrl
      241 avvllvvfyv cffpfhvfrg irlelrvrpv scrlknmvlf mfiiakplaa lntfgnllly
      301 vvtgdnfqqa ivsllkfqtk ktlk
//
LOCUS       XP_053910264             673 aa            linear   VRT 09-MAR-2023
DEFINITION  anosmin-1 [Cuculus canorus].
ACCESSION   XP_053910264
VERSION     XP_053910264.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054289.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..673
                     /product="anosmin-1"
                     /calculated_mol_wt=75827
     Region          37..117
                     /region_name="Cys_box"
                     /note="Anosmin cysteine rich domain; pfam17869"
                     /db_xref="CDD:465542"
     Region          103..168
                     /region_name="WAP"
                     /note="whey acidic protein-type four-disulfide core
                     domains. Members of the family include whey acidic
                     protein, elafin (elastase-specific inhibitor),
                     caltrin-like protein (a calcium transport inhibitor) and
                     other extracellular proteinase inhibitors. A group of...;
                     cd00199"
                     /db_xref="CDD:238120"
     Site            123..129
                     /site_type="inhibition"
                     /note="inhibitory loop"
                     /db_xref="CDD:238120"
     Site            order(175,247,262)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          178..267
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(264..265,267..268)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          282..372
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(282,357,372)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          543..639
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(635..636,637..638)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..673
                     /gene="ANOS1"
                     /coded_by="XM_054054289.1:121..2142"
                     /db_xref="GeneID:104054900"
ORIGIN      
        1 mvrsaplall lwaaaacasp aapgaaaaar rqdeafsaar ctsrclslqi trisaffkhf
       61 qnngslawcq nhkqcskcme pckeswdlkk nhcqsfcepl fpkknyeclt sceflkyils
      121 vkqgdcpape kasgfaaacv esceadsecs gvkkccsngc ghtcqvpknl ykgvplkprk
      181 elkfielqsg dlevkwsskf nisiepviyv vqrrwnqgih pseddatdwq tvaqttderv
      241 rlpdirasrw yqfrvaavnv hgtrgftaps khfrsskdps appapsniri anisanndgs
      301 vnvmitwdlp eepdipvhhy kvfwswtysk yvipakkkrr kitdgaqnyv ileelqpnsn
      361 ynvelqavtr wgqirlksak vslhfsttqd trnnkeqasp gkpqkglvdp yptfqrrkpt
      421 rflkigtpfy qdnqlqvkvy wkktdismnq fqvhwllesc ahndtkglgk vteltyenyv
      481 ilkdlsfsck ykvtvlpaks kgrlkaesif fvtpscsafk eknhkhincp aegvpvlpkv
      541 lakpenlsas fivqegnitg hfswklskad lhqpmtgfqv twaevttesr qnslpnsiis
      601 qsqilpadhy vltvpnlrps mlyrlevqvl ttggegpati ksfrtpdlpp fsphrphlkq
      661 hhphhykppl eky
//
LOCUS       XP_053910276             136 aa            linear   VRT 09-MAR-2023
DEFINITION  cysteine-rich DPF motif domain-containing protein 1 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053910276
VERSION     XP_053910276.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054301.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..136
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..136
                     /product="cysteine-rich DPF motif domain-containing
                     protein 1 isoform X1"
                     /calculated_mol_wt=15224
     Region          30..123
                     /region_name="C6_DPF"
                     /note="Cysteine-rich domain; pfam10170"
                     /db_xref="CDD:431108"
     CDS             1..136
                     /gene="CDPF1"
                     /coded_by="XM_054054301.1:634..1044"
                     /db_xref="GeneID:104062823"
ORIGIN      
        1 mtglqqktac hekgslkmda pkevqptgef tchlcgltap ytyfgqkppn trsivllees
       61 yvmkdpftpd kdkflilgsh cslcsrsvcv gtecslfysk rfclpcvken lkafpleiqe
      121 didkrkppge krdtrt
//
LOCUS       XP_053910285             119 aa            linear   VRT 09-MAR-2023
DEFINITION  cysteine-rich DPF motif domain-containing protein 1 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053910285
VERSION     XP_053910285.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054310.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..119
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..119
                     /product="cysteine-rich DPF motif domain-containing
                     protein 1 isoform X2"
                     /calculated_mol_wt=13382
     Region          13..106
                     /region_name="C6_DPF"
                     /note="Cysteine-rich domain; pfam10170"
                     /db_xref="CDD:431108"
     CDS             1..119
                     /gene="CDPF1"
                     /coded_by="XM_054054310.1:238..597"
                     /db_xref="GeneID:104062823"
ORIGIN      
        1 mdapkevqpt geftchlcgl tapytyfgqk ppntrsivll eesyvmkdpf tpdkdkflil
       61 gshcslcsrs vcvgtecslf yskrfclpcv kenlkafple iqedidkrkp pgekrdtrt
//
LOCUS       XP_009563238             119 aa            linear   VRT 09-MAR-2023
DEFINITION  cysteine-rich DPF motif domain-containing protein 1 isoform X2
            [Cuculus canorus].
ACCESSION   XP_009563238
VERSION     XP_009563238.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009564943.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..119
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..119
                     /product="cysteine-rich DPF motif domain-containing
                     protein 1 isoform X2"
                     /calculated_mol_wt=13382
     Region          13..106
                     /region_name="C6_DPF"
                     /note="Cysteine-rich domain; pfam10170"
                     /db_xref="CDD:431108"
     CDS             1..119
                     /gene="CDPF1"
                     /coded_by="XM_009564943.2:235..594"
                     /db_xref="GeneID:104062823"
ORIGIN      
        1 mdapkevqpt geftchlcgl tapytyfgqk ppntrsivll eesyvmkdpf tpdkdkflil
       61 gshcslcsrs vcvgtecslf yskrfclpcv kenlkafple iqedidkrkp pgekrdtrt
//
LOCUS       XP_053910302             119 aa            linear   VRT 09-MAR-2023
DEFINITION  cysteine-rich DPF motif domain-containing protein 1 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053910302
VERSION     XP_053910302.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054327.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..119
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..119
                     /product="cysteine-rich DPF motif domain-containing
                     protein 1 isoform X2"
                     /calculated_mol_wt=13382
     Region          13..106
                     /region_name="C6_DPF"
                     /note="Cysteine-rich domain; pfam10170"
                     /db_xref="CDD:431108"
     CDS             1..119
                     /gene="CDPF1"
                     /coded_by="XM_054054327.1:372..731"
                     /db_xref="GeneID:104062823"
ORIGIN      
        1 mdapkevqpt geftchlcgl tapytyfgqk ppntrsivll eesyvmkdpf tpdkdkflil
       61 gshcslcsrs vcvgtecslf yskrfclpcv kenlkafple iqedidkrkp pgekrdtrt
//
LOCUS       XP_053910312             119 aa            linear   VRT 09-MAR-2023
DEFINITION  cysteine-rich DPF motif domain-containing protein 1 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053910312
VERSION     XP_053910312.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054337.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..119
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..119
                     /product="cysteine-rich DPF motif domain-containing
                     protein 1 isoform X2"
                     /calculated_mol_wt=13382
     Region          13..106
                     /region_name="C6_DPF"
                     /note="Cysteine-rich domain; pfam10170"
                     /db_xref="CDD:431108"
     CDS             1..119
                     /gene="CDPF1"
                     /coded_by="XM_054054337.1:142..501"
                     /db_xref="GeneID:104062823"
ORIGIN      
        1 mdapkevqpt geftchlcgl tapytyfgqk ppntrsivll eesyvmkdpf tpdkdkflil
       61 gshcslcsrs vcvgtecslf yskrfclpcv kenlkafple iqedidkrkp pgekrdtrt
//
LOCUS       XP_053910321             119 aa            linear   VRT 09-MAR-2023
DEFINITION  cysteine-rich DPF motif domain-containing protein 1 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053910321
VERSION     XP_053910321.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054346.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..119
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..119
                     /product="cysteine-rich DPF motif domain-containing
                     protein 1 isoform X2"
                     /calculated_mol_wt=13382
     Region          13..106
                     /region_name="C6_DPF"
                     /note="Cysteine-rich domain; pfam10170"
                     /db_xref="CDD:431108"
     CDS             1..119
                     /gene="CDPF1"
                     /coded_by="XM_054054346.1:202..561"
                     /db_xref="GeneID:104062823"
ORIGIN      
        1 mdapkevqpt geftchlcgl tapytyfgqk ppntrsivll eesyvmkdpf tpdkdkflil
       61 gshcslcsrs vcvgtecslf yskrfclpcv kenlkafple iqedidkrkp pgekrdtrt
//
LOCUS       XP_053910334             175 aa            linear   VRT 09-MAR-2023
DEFINITION  adrenodoxin, mitochondrial [Cuculus canorus].
ACCESSION   XP_053910334
VERSION     XP_053910334.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054359.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..175
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..175
                     /product="adrenodoxin, mitochondrial"
                     /calculated_mol_wt=18563
     Region          58..161
                     /region_name="fer2"
                     /note="2Fe-2S iron-sulfur cluster binding domain.
                     Iron-sulfur proteins play an important role in electron
                     transfer processes and in various enzymatic reactions. The
                     family includes plant and algal ferredoxins, which act as
                     electron carriers in photosynthesis...; cl00159"
                     /db_xref="CDD:444718"
     Site            order(91..92,97,100,103..106,142..143)
                     /site_type="active"
                     /note="catalytic loop [active]"
                     /db_xref="CDD:238126"
     Site            order(97,103,106,143)
                     /site_type="other"
                     /note="iron binding site [ion binding]"
                     /db_xref="CDD:238126"
     CDS             1..175
                     /gene="FDX1"
                     /coded_by="XM_054054359.1:76..603"
                     /db_xref="GeneID:104055350"
ORIGIN      
        1 maapgparll raaaaassrr wlfsaspaaa trpgcgtvra arlfglssra alssddkitv
       61 hfinrdgekl takgkpgdsl ldvvvdnnld idgfgacegt lacstchlif edhvfeklda
      121 itdeemdmld laygltetsr lgcqiclkks mdnmtvrvpe avadvrqsvd mskns
//
LOCUS       XP_009567007             400 aa            linear   VRT 09-MAR-2023
DEFINITION  WD repeat and FYVE domain-containing protein 2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009567007
VERSION     XP_009567007.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568712.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567007.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..400
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..400
                     /product="WD repeat and FYVE domain-containing protein 2
                     isoform X1"
                     /calculated_mol_wt=44947
     Region          16..272
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cl29593"
                     /db_xref="CDD:475233"
     Site            order(23,41,45,51,53,65,85,89,95,100,112..113,130,135,
                     141..142,171,176,182..183,197..198,216,220,226..227,
                     240..241,258,263,269..270)
                     /site_type="active"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     Region          27..64
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          72..132
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          202..239
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          246..303
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          279..348
                     /region_name="FYVE_WDFY1_like"
                     /note="FYVE domain found in WD40 repeat and FYVE
                     domain-containing protein WDFY1 and WDFY2, and similar
                     proteins; cd15718"
                     /db_xref="CDD:277258"
     Site            order(281,285,310..315,317..318,342..344)
                     /site_type="other"
                     /note="putative phosphatidylinositol 3-phosphate binding
                     site [chemical binding]"
                     /db_xref="CDD:277258"
     Region          318..363
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          369..395
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..400
                     /gene="WDFY2"
                     /coded_by="XM_009568712.2:144..1346"
                     /db_xref="GeneID:104066140"
ORIGIN      
        1 maaepqpkal trkplllnkv egsqevvnma aivpkedgvi svsedrtvrv wlkrdsgqyw
       61 psiyhsmpsp cscmsfnpet rrlsigldng tisefilsed ynkmtlvksy qahqsrvmmi
      121 lfvlemewvl stgqdkhftw hcsesgqrlg gyrtsasacg lqfdvetrhv fvgdhsgqvt
      181 ilkleqescs lvttfkghtg gvtalcwdpi qrvlfsgssd hsiimwdigg rkgtaielqg
      241 hndkvqslsy ahhtrqlisc gadggivvwn mdverqetpe wldsdscqkc dqpffwnfkq
      301 mwdskkiglr qhhcrkcgka vcgkcsskrs siplmgfefe vrvcdsches itdeerapta
      361 tfhdskhniv hvhfdatrgw lltsgtdkvi klwdmtpvvs
//
LOCUS       XP_053910354             334 aa            linear   VRT 09-MAR-2023
DEFINITION  WD repeat and FYVE domain-containing protein 2 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053910354
VERSION     XP_053910354.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054379.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..334
                     /product="WD repeat and FYVE domain-containing protein 2
                     isoform X2"
                     /calculated_mol_wt=37545
     Region          6..66
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <34..206
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cl29593"
                     /db_xref="CDD:475233"
     Region          136..173
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          180..237
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          213..282
                     /region_name="FYVE_WDFY1_like"
                     /note="FYVE domain found in WD40 repeat and FYVE
                     domain-containing protein WDFY1 and WDFY2, and similar
                     proteins; cd15718"
                     /db_xref="CDD:277258"
     Site            order(215,219,244..249,251..252,276..278)
                     /site_type="other"
                     /note="putative phosphatidylinositol 3-phosphate binding
                     site [chemical binding]"
                     /db_xref="CDD:277258"
     Region          252..297
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          303..329
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..334
                     /gene="WDFY2"
                     /coded_by="XM_054054379.1:80..1084"
                     /db_xref="GeneID:104066140"
ORIGIN      
        1 mpspcscmsf npetrrlsig ldngtisefi lsedynkmtl vksyqahqsr vmmilfvlem
       61 ewvlstgqdk hftwhcsesg qrlggyrtsa sacglqfdve trhvfvgdhs gqvtilkleq
      121 escslvttfk ghtggvtalc wdpiqrvlfs gssdhsiimw diggrkgtai elqghndkvq
      181 slsyahhtrq liscgadggi vvwnmdverq etpewldsds cqkcdqpffw nfkqmwdskk
      241 iglrqhhcrk cgkavcgkcs skrssiplmg fefevrvcds chesitdeer aptatfhdsk
      301 hnivhvhfda trgwlltsgt dkviklwdmt pvvs
//
LOCUS       XP_009554898             303 aa            linear   VRT 09-MAR-2023
DEFINITION  serine hydrolase-like protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_009554898
VERSION     XP_009554898.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556603.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..303
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..303
                     /product="serine hydrolase-like protein 2 isoform X1"
                     /calculated_mol_wt=33737
     Region          1..294
                     /region_name="MenH"
                     /note="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase MenH and related
                     esterases, alpha/beta hydrolase fold [Coenzyme transport
                     and metabolism, General function prediction only];
                     COG0596"
                     /db_xref="CDD:440361"
     CDS             1..303
                     /gene="SERHL2"
                     /coded_by="XM_009556603.2:218..1129"
                     /db_xref="GeneID:104055478"
ORIGIN      
        1 mfselkfpvp wghmaakawg pleghpvlcl hgwldnantf dklipllpkd cyyvamdfsg
       61 hglsshrpag sayhlldyvs dvcrvaaalq wrrftlmghs mggavagmfc flypemvdkl
      121 illeslgfll apedteawlk skrvvidrll sleakqqapk arspeaalqr lleanrhlta
      181 eggaillqrg atetpaglvy nrdmrvhtqn resltveqcv kllqkiqdrv liivaqdgll
      241 iphkldsrnh fvkalrkafe stlkehiqia evpgshfvhl nepkavsgii snflmvqnar
      301 arl
//
LOCUS       XP_053910370             302 aa            linear   VRT 09-MAR-2023
DEFINITION  serine hydrolase-like protein 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053910370
VERSION     XP_053910370.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054395.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..302
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..302
                     /product="serine hydrolase-like protein 2 isoform X2"
                     /calculated_mol_wt=33609
     Region          1..293
                     /region_name="MenH"
                     /note="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase MenH and related
                     esterases, alpha/beta hydrolase fold [Coenzyme transport
                     and metabolism, General function prediction only];
                     COG0596"
                     /db_xref="CDD:440361"
     CDS             1..302
                     /gene="SERHL2"
                     /coded_by="XM_054054395.1:218..1126"
                     /db_xref="GeneID:104055478"
ORIGIN      
        1 mfselkfpvp wghmaakawg pleghpvlcl hgwldnantf dklipllpkd cyyvamdfsg
       61 hglsshrpag sayhlldyvs dvcrvaaalq wrrftlmghs mggavagmfc flypemvdkl
      121 illeslgfll apedteawlk skrvvidrll sleakqqapk arspeaalqr lleanrhlta
      181 eggaillqrg atetpaglvy nrdmrvhtnr esltveqcvk llqkiqdrvl iivaqdglli
      241 phkldsrnhf vkalrkafes tlkehiqiae vpgshfvhln epkavsgiis nflmvqnara
      301 rl
//
LOCUS       XP_053910379             268 aa            linear   VRT 09-MAR-2023
DEFINITION  serine hydrolase-like protein 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053910379
VERSION     XP_053910379.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054404.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..268
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..268
                     /product="serine hydrolase-like protein 2 isoform X3"
                     /calculated_mol_wt=29842
     Region          1..>171
                     /region_name="MenH"
                     /note="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase MenH and related
                     esterases, alpha/beta hydrolase fold [Coenzyme transport
                     and metabolism, General function prediction only];
                     COG0596"
                     /db_xref="CDD:440361"
     CDS             1..268
                     /gene="SERHL2"
                     /coded_by="XM_054054404.1:218..1024"
                     /db_xref="GeneID:104055478"
ORIGIN      
        1 mfselkfpvp wghmaakawg pleghpvlcl hgwldnantf dklipllpkd cyyvamdfsg
       61 hglsshrpag sayhlldyvs dvcrvaaalq wrrftlmghs mggavagmfc flypemvdkl
      121 illeslgfll apedteawlk skrvvidrll sleakqqapk arspeaalqr lleanrhlta
      181 eggaillqrg atetpaglvy nrdmrvhtqn resltveqcv kllqkiqdrv liivaqdgll
      241 iphkldsrnh fvkalrkafe stlkelap
//
LOCUS       XP_053910394             272 aa            linear   VRT 09-MAR-2023
DEFINITION  ribosomal RNA-processing protein 7 homolog A [Cuculus canorus].
ACCESSION   XP_053910394
VERSION     XP_053910394.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054419.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..272
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..272
                     /product="ribosomal RNA-processing protein 7 homolog A"
                     /calculated_mol_wt=30881
     Region          11..>78
                     /region_name="dRRM_Rrp7p"
                     /note="deviant RNA recognition motif (dRRM) in yeast
                     ribosomal RNA-processing protein 7 (Rrp7p) and similar
                     proteins; cl40585"
                     /db_xref="CDD:454777"
     Region          49..151
                     /region_name="RRM_Rrp7A"
                     /note="RNA recognition motif in ribosomal RNA-processing
                     protein 7 homolog A (Rrp7A) and similar proteins; cd12294"
                     /db_xref="CDD:409735"
     Region          143..272
                     /region_name="RRP7_Rrp7A"
                     /note="RRP7 domain ribosomal RNA-processing protein 7
                     homolog A (Rrp7A) and similar proteins; cd12951"
                     /db_xref="CDD:240578"
     CDS             1..272
                     /gene="RRP7A"
                     /coded_by="XM_054054419.1:69..887"
                     /db_xref="GeneID:104055526"
ORIGIN      
        1 mapanervap agfaalavkf gerqrsphwl lvkehqvreg adtahpprrt lfvlnvppyc
       61 gadslsrlfa rcghvqsvev cekptpgekk ekhtskffnr ksatgfqvay vvfrkpagvq
      121 aakalsqegp llisteshpv ktgiskwids yaasvvdpee lraevdaymq dydkkiaeee
      181 akaakeegip deegwvkvtr kgrkpglprt eaanlrvlek ekqkrarkel lnfyawqhre
      241 tkrehiaqlr kkfeedkqri almraqrkfr py
//
LOCUS       XP_009563865             354 aa            linear   VRT 09-MAR-2023
DEFINITION  vascular endothelial growth factor D [Cuculus canorus].
ACCESSION   XP_009563865
VERSION     XP_009563865.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565570.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..354
                     /product="vascular endothelial growth factor D"
                     /calculated_mol_wt=40423
     Region          109..193
                     /region_name="PDGF"
                     /note="Platelet-derived and vascular endothelial growth
                     factors (PDGF, VEGF) family; smart00141"
                     /db_xref="CDD:197537"
     Site            order(109..112,146,148..151,166..169)
                     /site_type="active"
                     /note="receptor binding interface [active]"
                     /db_xref="CDD:238079"
     Site            order(111,142,146,153,189,191)
                     /site_type="other"
                     /note="cysteine knot motif"
                     /db_xref="CDD:238079"
     Site            order(136,145)
                     /site_type="other"
                     /note="dimerization interface [polypeptide binding]"
                     /db_xref="CDD:238079"
     CDS             1..354
                     /gene="VEGFD"
                     /coded_by="XM_009565570.2:531..1595"
                     /db_xref="GeneID:104063400"
ORIGIN      
        1 myklwatvni fivsflhlpq gsgyengsvk rtslsalers eqqirrassl eellrithse
       61 dwklwkcrlk lkslanldsr sashrstrfa aafydidtlk videewqktq cvpretcvev
      121 akelgtttnk ffkppcvnvf rcggccnees lscmntstty vsktlfeisv pltsvpepvp
      181 ikianhtgck clsntprhqy tiirrsvqys eeedgcpftn khchngwiwd sdkcecvvdv
      241 qhpnrreelp plaelamcgq hmefdeence cvcrqkcptn ffqskencsc ylcrenqesc
      301 alkykifhae tcsceekcps qprtcptakp tcprhcrcqk ekrgshgsqs retp
//
LOCUS       XP_053910417             392 aa            linear   VRT 09-MAR-2023
DEFINITION  selenide, water dikinase 1 [Cuculus canorus].
ACCESSION   XP_053910417
VERSION     XP_053910417.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054442.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..392
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..392
                     /product="selenide, water dikinase 1"
                     /calculated_mol_wt=42806
     Region          19..333
                     /region_name="selD"
                     /note="selenium donor protein; TIGR00476"
                     /db_xref="CDD:273100"
     Site            order(81..84,86,88,110,121,124,127,163,170..171,175,277)
                     /site_type="other"
                     /note="dimerization interface [polypeptide binding]"
                     /db_xref="CDD:100031"
     Site            order(106,110,161..163)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:100031"
     CDS             1..392
                     /gene="SEPHS1"
                     /coded_by="XM_054054442.1:376..1554"
                     /db_xref="GeneID:104066209"
ORIGIN      
        1 msvretfnpe syeldksfrl trftelkgtg ckvpqdvlqk lleslqenhf qedeqflgav
       61 mprlgigmdt cviplrhggl slvqttdyiy pivddpymmg riacanvlsd lyamgvtecd
      121 nmlmllgisn kmtdrerdkv mpliiqgfkd aaeeagtsvt ggqtvlnpwi vlggvattvc
      181 qpnefimpdn avpgdvlvlt kplgtqvava vhqwldipek wnkiklvvtq edvelayqea
      241 mmnmarlnrt aaglmhtfna haatditgfg ilghaqnlak qqrnevsfvi hnlpvlakma
      301 avskacgnmf glmhgtcpet sgglliclpr eqaarfcaei kspkygeghq awiigivekg
      361 nrtariidkp riievapqva tqnvnptpga ts
//
LOCUS       XP_053910427             392 aa            linear   VRT 09-MAR-2023
DEFINITION  selenide, water dikinase 1 [Cuculus canorus].
ACCESSION   XP_053910427
VERSION     XP_053910427.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054452.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..392
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..392
                     /product="selenide, water dikinase 1"
                     /calculated_mol_wt=42806
     Region          19..333
                     /region_name="selD"
                     /note="selenium donor protein; TIGR00476"
                     /db_xref="CDD:273100"
     Site            order(81..84,86,88,110,121,124,127,163,170..171,175,277)
                     /site_type="other"
                     /note="dimerization interface [polypeptide binding]"
                     /db_xref="CDD:100031"
     Site            order(106,110,161..163)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:100031"
     CDS             1..392
                     /gene="SEPHS1"
                     /coded_by="XM_054054452.1:205..1383"
                     /db_xref="GeneID:104066209"
ORIGIN      
        1 msvretfnpe syeldksfrl trftelkgtg ckvpqdvlqk lleslqenhf qedeqflgav
       61 mprlgigmdt cviplrhggl slvqttdyiy pivddpymmg riacanvlsd lyamgvtecd
      121 nmlmllgisn kmtdrerdkv mpliiqgfkd aaeeagtsvt ggqtvlnpwi vlggvattvc
      181 qpnefimpdn avpgdvlvlt kplgtqvava vhqwldipek wnkiklvvtq edvelayqea
      241 mmnmarlnrt aaglmhtfna haatditgfg ilghaqnlak qqrnevsfvi hnlpvlakma
      301 avskacgnmf glmhgtcpet sgglliclpr eqaarfcaei kspkygeghq awiigivekg
      361 nrtariidkp riievapqva tqnvnptpga ts
//
LOCUS       XP_053910434             392 aa            linear   VRT 09-MAR-2023
DEFINITION  selenide, water dikinase 1 [Cuculus canorus].
ACCESSION   XP_053910434
VERSION     XP_053910434.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054459.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..392
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..392
                     /product="selenide, water dikinase 1"
                     /calculated_mol_wt=42806
     Region          19..333
                     /region_name="selD"
                     /note="selenium donor protein; TIGR00476"
                     /db_xref="CDD:273100"
     Site            order(81..84,86,88,110,121,124,127,163,170..171,175,277)
                     /site_type="other"
                     /note="dimerization interface [polypeptide binding]"
                     /db_xref="CDD:100031"
     Site            order(106,110,161..163)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:100031"
     CDS             1..392
                     /gene="SEPHS1"
                     /coded_by="XM_054054459.1:88..1266"
                     /db_xref="GeneID:104066209"
ORIGIN      
        1 msvretfnpe syeldksfrl trftelkgtg ckvpqdvlqk lleslqenhf qedeqflgav
       61 mprlgigmdt cviplrhggl slvqttdyiy pivddpymmg riacanvlsd lyamgvtecd
      121 nmlmllgisn kmtdrerdkv mpliiqgfkd aaeeagtsvt ggqtvlnpwi vlggvattvc
      181 qpnefimpdn avpgdvlvlt kplgtqvava vhqwldipek wnkiklvvtq edvelayqea
      241 mmnmarlnrt aaglmhtfna haatditgfg ilghaqnlak qqrnevsfvi hnlpvlakma
      301 avskacgnmf glmhgtcpet sgglliclpr eqaarfcaei kspkygeghq awiigivekg
      361 nrtariidkp riievapqva tqnvnptpga ts
//
LOCUS       XP_053910441             392 aa            linear   VRT 09-MAR-2023
DEFINITION  selenide, water dikinase 1 [Cuculus canorus].
ACCESSION   XP_053910441
VERSION     XP_053910441.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054466.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..392
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..392
                     /product="selenide, water dikinase 1"
                     /calculated_mol_wt=42806
     Region          19..333
                     /region_name="selD"
                     /note="selenium donor protein; TIGR00476"
                     /db_xref="CDD:273100"
     Site            order(81..84,86,88,110,121,124,127,163,170..171,175,277)
                     /site_type="other"
                     /note="dimerization interface [polypeptide binding]"
                     /db_xref="CDD:100031"
     Site            order(106,110,161..163)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:100031"
     CDS             1..392
                     /gene="SEPHS1"
                     /coded_by="XM_054054466.1:89..1267"
                     /db_xref="GeneID:104066209"
ORIGIN      
        1 msvretfnpe syeldksfrl trftelkgtg ckvpqdvlqk lleslqenhf qedeqflgav
       61 mprlgigmdt cviplrhggl slvqttdyiy pivddpymmg riacanvlsd lyamgvtecd
      121 nmlmllgisn kmtdrerdkv mpliiqgfkd aaeeagtsvt ggqtvlnpwi vlggvattvc
      181 qpnefimpdn avpgdvlvlt kplgtqvava vhqwldipek wnkiklvvtq edvelayqea
      241 mmnmarlnrt aaglmhtfna haatditgfg ilghaqnlak qqrnevsfvi hnlpvlakma
      301 avskacgnmf glmhgtcpet sgglliclpr eqaarfcaei kspkygeghq awiigivekg
      361 nrtariidkp riievapqva tqnvnptpga ts
//
LOCUS       XP_009567378             218 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H1 [Cuculus canorus].
ACCESSION   XP_009567378
VERSION     XP_009567378.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009569083.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567378.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..218
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..218
                     /product="histone H1"
                     /calculated_mol_wt=21846
     Region          35..112
                     /region_name="H15"
                     /note="linker histone 1 and histone 5 domains; the basic
                     subunit of chromatin is the nucleosome, consisting of an
                     octamer of core histones, two full turns of DNA, a linker
                     histone (H1 or H5) and a variable length of linker DNA;
                     H1/H5 are chromatin-associated...; cd00073"
                     /db_xref="CDD:238028"
     Site            order(42,54,84,98)
                     /site_type="DNA binding"
                     /note="DNA-binding site [nucleotide binding]"
                     /db_xref="CDD:238028"
     Site            79..90
                     /site_type="DNA binding"
                     /note="DNA-binding site [nucleotide binding]"
                     /db_xref="CDD:238028"
     CDS             1..218
                     /gene="LOC104066477"
                     /coded_by="XM_009569083.2:29..685"
                     /db_xref="GeneID:104066477"
ORIGIN      
        1 msetapvaap avsapgakaa akkpkkaagg skarkpagps vtelitkavs askerkglsl
       61 aalkkalaag gydveknnsr iklglkslvs kgtlvqtkgt gasgsfklnk kpgetkekat
      121 kkkpaakpkk paakkpasaa kkpkkaapvk kspkkakkpa ataakkaaks pkkaaktgrp
      181 kkaakspaka ktvkpkaakp kaakpkaaka kkaapkkk
//
LOCUS       XP_053910466             129 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H2A [Cuculus canorus].
ACCESSION   XP_053910466
VERSION     XP_053910466.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054491.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..129
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..129
                     /product="histone H2A"
                     /calculated_mol_wt=13825
     Region          1..129
                     /region_name="PTZ00017"
                     /note="histone H2A; Provisional"
                     /db_xref="CDD:185399"
     CDS             1..129
                     /gene="LOC104068656"
                     /coded_by="XM_054054491.1:60..449"
                     /db_xref="GeneID:104068656"
ORIGIN      
        1 msgrgkqggk arakaksrss raglqfpvgr vhrllrkgny aervgagapv ylaavleylt
       61 aeilelagna ardnkktrii prhlqlairn deelnkllgk vtiaqggvlp niqavllpkk
      121 tdshkaksk
//
LOCUS       XP_009556890             126 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H2B 1/2/3/4/6 [Cuculus canorus].
ACCESSION   XP_009556890
VERSION     XP_009556890.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009558595.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..126
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..126
                     /product="histone H2B 1/2/3/4/6"
                     /calculated_mol_wt=13791
     Region          36..123
                     /region_name="HFD_H2B"
                     /note="histone-fold domain found in histone H2B and
                     similar proteins; cd22910"
                     /db_xref="CDD:467035"
     Site            order(36,38,40..42,44..46,49..56,58..59,62..63,66..67,
                     69..71,73..75,79,89..90,92,95..96,99,102..104,107,
                     110..112,114..115,118..119,122..123)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467035"
     Site            order(39..41,43..44,47..49,54..56,60,96,100,109..110,
                     112..113,116..117,119..120,123)
                     /site_type="other"
                     /note="Hif1 binding site [polypeptide binding]"
                     /db_xref="CDD:467035"
     Site            order(62,65..66,68..69,72,77,80,83..85,93..94,97,101..102)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:467035"
     CDS             1..126
                     /gene="LOC104057257"
                     /coded_by="XM_009558595.2:22..402"
                     /db_xref="GeneID:104057257"
ORIGIN      
        1 mpepaksapa pkkgskkavt ktqkkgdkkr kksrkesysi yvykvlkqvh pdtgisskam
       61 gimnsfvndi feriageasr lahynkrsti tsreiqtavr lllpgelakh avsegtkavt
      121 kytssk
//
LOCUS       XP_053910487             297 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription cofactor vestigial-like protein 3 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053910487
VERSION     XP_053910487.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054512.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..297
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..297
                     /product="transcription cofactor vestigial-like protein 3
                     isoform X1"
                     /calculated_mol_wt=32272
     Region          64..94
                     /region_name="Vg_Tdu"
                     /note="Vestigial/Tondu family; pfam07545"
                     /db_xref="CDD:462203"
     CDS             1..297
                     /gene="VGLL3"
                     /coded_by="XM_054054512.1:144..1037"
                     /db_xref="GeneID:104056029"
ORIGIN      
        1 mscsdvamqq pvpaacgapr ypaapaagca qkklavyhkm qeslevtlps kqeedekdqp
       61 aemeylnsrc vlftyfqgdi gsvvdehfsr alsqassfnp etaltkskag lsplwresst
      121 issqrssfpt sfwtssyqpp pppclsgvhp dfpvtapgtf ptpdpsswpg hglhqtappp
      181 ppaaseswhy plasqvspsy ahmhdvymhh hhphphmhhh hpsshrdpry gsllmpsvrt
      241 aripapqcdv tktdpaavts atsawagafh gtvdivpsfg fdtglqhqdk skeaswf
//
LOCUS       XP_053910497             296 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription cofactor vestigial-like protein 3 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053910497
VERSION     XP_053910497.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054522.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..296
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..296
                     /product="transcription cofactor vestigial-like protein 3
                     isoform X2"
                     /calculated_mol_wt=32144
     Region          63..93
                     /region_name="Vg_Tdu"
                     /note="Vestigial/Tondu family; pfam07545"
                     /db_xref="CDD:462203"
     CDS             1..296
                     /gene="VGLL3"
                     /coded_by="XM_054054522.1:145..1035"
                     /db_xref="GeneID:104056029"
ORIGIN      
        1 mscsdvamqq pvpaacgapr ypaapaagca qklavyhkmq eslevtlpsk qeedekdqpa
       61 emeylnsrcv lftyfqgdig svvdehfsra lsqassfnpe taltkskagl splwressti
      121 ssqrssfpts fwtssyqppp ppclsgvhpd fpvtapgtfp tpdpsswpgh glhqtapppp
      181 paaseswhyp lasqvspsya hmhdvymhhh hphphmhhhh psshrdpryg sllmpsvrta
      241 ripapqcdvt ktdpaavtsa tsawagafhg tvdivpsfgf dtglqhqdks keaswf
//
LOCUS       XP_009561318             386 aa            linear   VRT 09-MAR-2023
DEFINITION  KRR1 small subunit processome component homolog [Cuculus canorus].
ACCESSION   XP_009561318
VERSION     XP_009561318.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563023.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561318.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..386
                     /product="KRR1 small subunit processome component homolog"
                     /calculated_mol_wt=43800
     Region          59..141
                     /region_name="KH-I_KRR1_rpt1"
                     /note="first type I K homology (KH) RNA-binding domain
                     found in KRR1 small subunit processome component and
                     similar proteins; cd22393"
                     /db_xref="CDD:411821"
     Site            order(64,66..73,97..103,114..116,119)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:411821"
     Region          145..237
                     /region_name="KH-I_KRR1_rpt2"
                     /note="second type I K homology (KH) RNA-binding domain
                     found in KRR1 small subunit processome component and
                     similar proteins; cd22394"
                     /db_xref="CDD:411822"
     Site            order(153..154,157..158,193,219)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:411822"
     Site            order(168,176,179,217,219,221..222,224..225,228)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:411822"
     CDS             1..386
                     /gene="KRR1"
                     /coded_by="XM_009563023.2:56..1216"
                     /db_xref="GeneID:104061137"
ORIGIN      
        1 madpaeaaea gsgsgsvgkq kgkqkskkka aavdesellt vpdgwkepaf trednpkgll
       61 eessfatlfp kyreaylkec wplvqkalse hyvnatldli egsmtvtttk ktfdpyviir
      121 ardlikllar svpfeqavri lqddvacdii kigslvrkrd tfikrrgrll gpkgstlkal
      181 elltncyimv qgntvsalgp fsglkevrkv vldtmknihp iyniktlmik relakdpelr
      241 tqswerflpk fkrknlkkrk epkkkntkke ytpfpppqpe sqvdkelasg eyflkerqkk
      301 rkrveeikak qadavkkrqe ernkafippk ekpvmktkka ssekkidina ikekvknakt
      361 kklgalpvee vklkmaadek kkkkkk
//
LOCUS       XP_009561319             265 aa            linear   VRT 09-MAR-2023
DEFINITION  glioma pathogenesis-related protein 1 [Cuculus canorus].
ACCESSION   XP_009561319
VERSION     XP_009561319.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563024.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561319.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..265
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..265
                     /product="glioma pathogenesis-related protein 1"
                     /calculated_mol_wt=29581
     Region          34..180
                     /region_name="CAP"
                     /note="CAP (cysteine-rich secretory proteins, antigen 5,
                     and pathogenesis-related 1 proteins) domain family;
                     cl00133"
                     /db_xref="CDD:412178"
     CDS             1..265
                     /gene="LOC104061139"
                     /coded_by="XM_009563024.2:94..891"
                     /db_xref="GeneID:104061139"
ORIGIN      
        1 mtsrfsacvl allyfchssd syepttlpdv gdpkfieecv rthnrfrsgv nppasnmlym
       61 swdpdlakta kawakkclfk hntylkipgq ahpkftpvge nlwtgslpaf teqaaitswy
      121 nevrdynytt nkcrgqcghy tqvvwatsyk vgcavhfcpr vayssitkaa hficnygpag
      181 nypvrpykmg aacsdcngeh casklcqnae rdkvisdssw rpdwdrpacd eycitvlvlr
      241 plllilsila tcllpkytsi aptse
//
LOCUS       XP_053910530             771 aa            linear   VRT 09-MAR-2023
DEFINITION  protein associated with UVRAG as autophagy enhancer [Cuculus
            canorus].
ACCESSION   XP_053910530
VERSION     XP_053910530.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054555.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..771
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..771
                     /product="protein associated with UVRAG as autophagy
                     enhancer"
                     /calculated_mol_wt=85140
     Region          551..748
                     /region_name="zf-RING_9"
                     /note="Putative zinc-RING and/or ribbon; pfam13901"
                     /db_xref="CDD:464030"
     CDS             1..771
                     /gene="RUBCNL"
                     /coded_by="XM_054054555.1:151..2466"
                     /db_xref="GeneID:104056502"
ORIGIN      
        1 mslhavalas csatgafghp rskqlsrenl kvaftesvys snpsvriscl aptpqisvls
       61 deysrpavig hagsfgsypn saeaikdilv svlnasglkp slvveqttmq gaehldsdme
      121 rwegssdgds hddsdgdsah hstactqtdv rftrhracwd nmccdsskps ldtfsphypk
      181 gdpaasssng ctfsdmsplk rdcftqvtlt gatvtsavvh sgkerypspe rdltftrflp
      241 dsaagkpadl lkypealeps pvsindsnss salsqsepvn rtgsasplni saiplnrslq
      301 dirmlpedve kenahffvad miiaslermk cnilsqqaes wsveetsgsd gsyhtdsels
      361 ayprekksds svassdsgye gcallplssp lhlhshhevt rfhchsdsed eyviieledl
      421 enlsvtpder ssfeadsnsa eataqelcra frkhwlqtnp avqlsgclss skqrsvlkee
      481 vprelessln laeeikiisk lrgssgwapp ksqiifnihp svkrdvvvaa qnftcvgcgt
      541 pieskyigrl rycdylgkyf cecchsyaqs siparillkw dfkkyyvcnf skhlldsiwq
      601 hpvfnvscin kalymkskdm drvrevqeql fhlkkllrtc rfgesvlkey eqvpshltee
      661 lhlfslddlv kikrgqllpl lkdilkssts hvdgcelcqa kgficefcqs adllfphqta
      721 kckrctecks cfhkacfksg gcpkclrias rrtlsetsvt sasmklhsyd c
//
LOCUS       XP_053910544             429 aa            linear   VRT 09-MAR-2023
DEFINITION  tumor necrosis factor receptor superfamily member 1A [Cuculus
            canorus].
ACCESSION   XP_053910544
VERSION     XP_053910544.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054569.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..429
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..429
                     /product="tumor necrosis factor receptor superfamily
                     member 1A"
                     /calculated_mol_wt=47794
     Region          61..188
                     /region_name="TNFRSF1A"
                     /note="Tumor necrosis factor receptor superfamily member
                     1A (TNFRSF1A), also known as TNFR1; cd10576"
                     /db_xref="CDD:276902"
     Site            order(61..63,67,105,114,116..117,119,122,124,138,149,
                     151..152,187)
                     /site_type="other"
                     /note="antiparallel homodimerization interface
                     [polypeptide binding]"
                     /db_xref="CDD:276902"
     Region          61..97
                     /region_name="CRD1"
                     /note="CRD1 [structural motif]"
                     /db_xref="CDD:276902"
     Site            order(63..65,76..82,94,99,109,135..136,173,176,179..181,
                     188)
                     /site_type="other"
                     /note="parallel homodimerization interface [polypeptide
                     binding]"
                     /db_xref="CDD:276902"
     Region          100..141
                     /region_name="CRD2"
                     /note="CRD2 [structural motif]"
                     /db_xref="CDD:276902"
     Site            order(104,114..117,120,122..124,157)
                     /site_type="other"
                     /note="polypeptide ligand binding site [polypeptide
                     binding]"
                     /db_xref="CDD:276902"
     Region          143..180
                     /region_name="CRD3"
                     /note="CRD3 [structural motif]"
                     /db_xref="CDD:276902"
     Region          333..411
                     /region_name="Death_TNFR1"
                     /note="Death domain of Tumor Necrosis Factor Receptor 1;
                     cd08313"
                     /db_xref="CDD:176729"
     CDS             1..429
                     /gene="TNFRSF1A"
                     /coded_by="XM_054054569.1:120..1409"
                     /db_xref="GeneID:104055867"
ORIGIN      
        1 mgglaqprrl lravmltfic vlmkesvetd pvpyalqvhr valdgrdpsn hlrrekrqvq
       61 cqlgqylhpr kthccmrcha gtykakdceg pgqapvclpc angtftavdn tmskcfqctr
      121 criefqqive tpctpkqdtv cgcrknqyqi glpdlfqcrn crlctngiia ncsknkdtic
      181 rckpgffltl snickpcnsc igedclqchs pvttspassg lngtlilgii vaifgvisvv
      241 yivnklvkli qenaiassfy scvslpqttk epacevdvkr neisillpes qkemellvna
      301 sppppaplpq sshelpdcvr parktqlpdn pailytvvdh vppsrwkefv rrlglsdydl
      361 eriemehrrl rdaqyemlrl wqlqmghaat vehiscvlnq melsgcseai qeallhqnsp
      421 lpcsihshl
//
LOCUS       XP_009558843              49 aa            linear   VRT 09-MAR-2023
DEFINITION  short transmembrane mitochondrial protein 1 [Cuculus canorus].
ACCESSION   XP_009558843
VERSION     XP_009558843.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560548.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..49
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..49
                     /product="short transmembrane mitochondrial protein 1"
                     /calculated_mol_wt=5427
     Region          4..44
                     /region_name="DUF4535"
                     /note="Domain of unknown function (DUF4535); pfam15054"
                     /db_xref="CDD:464473"
     CDS             1..49
                     /gene="STMP1"
                     /coded_by="XM_009560548.2:90..239"
                     /db_xref="GeneID:104058956"
ORIGIN      
        1 mlqfllgftl gnvvgmylaq nyeipniakk ledfkkdvea kkkppsdks
//
LOCUS       XP_009555468             469 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-aminobutyric acid receptor subunit rho-3 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009555468
VERSION     XP_009555468.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557173.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555468.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..469
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..469
                     /product="gamma-aminobutyric acid receptor subunit rho-3
                     isoform X1"
                     /calculated_mol_wt=54407
     Region          70..468
                     /region_name="LIC"
                     /note="Cation transporter family protein; cl42365"
                     /db_xref="CDD:455710"
     Region          83..268
                     /region_name="LGIC_ECD"
                     /note="extracellular domain (ECD) of Cys-loop
                     neurotransmitter-gated ion channels (also known as
                     ligand-gated ion channel (LGIC)); cl28912"
                     /db_xref="CDD:475126"
     Site            order(94,96,102..103,110,129,131,143..144,146,148..149,
                     162..164,166,176,178,180,184,206,267)
                     /site_type="other"
                     /note="pentamer interface [polypeptide binding]"
                     /db_xref="CDD:349787"
     CDS             1..469
                     /gene="GABRR3"
                     /coded_by="XM_009557173.2:1102..2511"
                     /db_xref="GeneID:104055973"
ORIGIN      
        1 mvlvtkllfl iclwptavlh ssqsqhhplh hrqqfsflrq hnskreikmr kldstkvrpl
       61 kseqllhied hdfalrpgfg gspipvgidv qvesidsise vdmdftmtly lrhywkderl
      121 sfhsnknksm tfdgrlikki wvpdvffvhs krsfihdttv enimirvypd gnvlfslrit
      181 vsamcfmdfs rfpldtqncs lelesyayne ddlmlywkhg nkslstdehi slsqffieef
      241 sassglafys stgwynrlfi nfalrrhiff fvlqsyfpam lmvmlswvsf widrravpar
      301 vslgittvlt mstimtgvsa smpqvsyika vdvylwisfl fvflsvieya avnylttiee
      361 rkqlkkkgka sgmysidavq amafdgcfhd tdvdmdltaf sdhceedetr araasvsdld
      421 ttrikrkrsl kgnvgriilq nnhvidtysr iifpsvyivf nffywglyl
//
LOCUS       XP_053910573             417 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-aminobutyric acid receptor subunit rho-3 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053910573
VERSION     XP_053910573.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054598.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..417
                     /product="gamma-aminobutyric acid receptor subunit rho-3
                     isoform X2"
                     /calculated_mol_wt=48409
     Region          83..268
                     /region_name="LGIC_ECD"
                     /note="extracellular domain (ECD) of Cys-loop
                     neurotransmitter-gated ion channels (also known as
                     ligand-gated ion channel (LGIC)); cl28912"
                     /db_xref="CDD:475126"
     Site            order(94,96,102..103,110,129,131,143..144,146,148..149,
                     162..164,166,176,178,180,184,206,267)
                     /site_type="other"
                     /note="pentamer interface [polypeptide binding]"
                     /db_xref="CDD:349787"
     Region          269..414
                     /region_name="LGIC_TM"
                     /note="transmembrane domain of Cys-loop
                     neurotransmitter-gated ion channels; cl38911"
                     /db_xref="CDD:476813"
     Site            order(273..274,281..282,284..285,288,291..293,302..303,
                     305..307,309..310,313..314,320,322,355,359,362,366,398)
                     /site_type="other"
                     /note="pentamer interface [polypeptide binding]"
                     /db_xref="CDD:349850"
     Region          273..293
                     /region_name="TM1 helix"
                     /note="TM1 helix [structural motif]"
                     /db_xref="CDD:349850"
     Region          302..322
                     /region_name="TM2 helix"
                     /note="TM2 helix [structural motif]"
                     /db_xref="CDD:349850"
     Region          345..367
                     /region_name="TM3 helix"
                     /note="TM3 helix [structural motif]"
                     /db_xref="CDD:349850"
     Region          392..413
                     /region_name="TM4 helix"
                     /note="TM4 helix [structural motif]"
                     /db_xref="CDD:349850"
     CDS             1..417
                     /gene="GABRR3"
                     /coded_by="XM_054054598.1:1106..2359"
                     /db_xref="GeneID:104055973"
ORIGIN      
        1 mvlvtkllfl iclwptavlh ssqsqhhplh hrqqfsflrq hnskreikmr kldstkvrpl
       61 kseqllhied hdfalrpgfg gspipvgidv qvesidsise vdmdftmtly lrhywkderl
      121 sfhsnknksm tfdgrlikki wvpdvffvhs krsfihdttv enimirvypd gnvlfslrit
      181 vsamcfmdfs rfpldtqncs lelesyayne ddlmlywkhg nkslstdehi slsqffieef
      241 sassglafys stgwynrlfi nfalrrhiff fvlqsyfpam lmvmlswvsf widrravpar
      301 vslgittvlt mstimtgasg mysidavqam afdgcfhdtd vdmdltafsd hceedetrar
      361 aasvsdldtt rikrkrslkg nvgriilqnn hvidtysrii fpsvyivfnf fywglyl
//
LOCUS       XP_053910604            1495 aa            linear   VRT 09-MAR-2023
DEFINITION  plexin-C1 [Cuculus canorus].
ACCESSION   XP_053910604
VERSION     XP_053910604.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054629.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1495
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1495
                     /product="plexin-C1"
                     /calculated_mol_wt=168159
     Region          21..404
                     /region_name="Sema"
                     /note="The Sema domain, a protein interacting module, of
                     semaphorins and plexins; cl15693"
                     /db_xref="CDD:472829"
     Region          405..452
                     /region_name="PSI"
                     /note="Plexin repeat; pfam01437"
                     /db_xref="CDD:396154"
     Region          587..676
                     /region_name="IPT"
                     /note="Immunoglobulin-like fold, Plexins, Transcription
                     factors (IPT). IPTs are also known as Transcription factor
                     ImmunoGlobin (TIG) domains. They are present in
                     intracellular transcription factors, cell surface
                     receptors (such as plexins and scatter factor...; cd00102"
                     /db_xref="CDD:238050"
     Region          678..>722
                     /region_name="TIG"
                     /note="IPT/TIG domain; pfam01833"
                     /db_xref="CDD:460355"
     Region          938..1457
                     /region_name="Plexin_cytopl"
                     /note="Plexin cytoplasmic RasGAP domain; pfam08337"
                     /db_xref="CDD:462434"
     CDS             1..1495
                     /gene="PLXNC1"
                     /coded_by="XM_054054629.1:102..4589"
                     /db_xref="GeneID:104058434"
ORIGIN      
        1 malrwalpll aalagasgpq sfelpgapie nievsggavl vaggsclyel rpelrprrrv
       61 vpapgqgcae ppgmrsnlll pyeedggagv llagwtqqdg tcqvwerpsy rqrlnlsevv
      121 scrpdgstag vvfqmagtwy lavaatystg qygrhldcqp srsdeatvit vrsvaelvsk
      181 eelgiikrkk eplhfvdalr wgnhlffpyy twkvksgngt elpsmavlhq lhpsrggltm
      241 qgqvyldcgc rslivssslv pqgeqgwwvg vfrhshsdka wnttavcifg meemkeqaca
      301 sthfimngkg cdaqsirklp tlihsglvav ygtvvlnqiv lflgtddgql lkailnedme
      361 sncpevlyei keetsifpkl rldpvdsnyi ylssaskvrr ipvancgryv seqeclsakd
      421 pycgwcslnq rctlkenctr snsvkgwyni shaadkdlki llsfpaknqv avsasisktl
      481 tscvikivkp veifyenvvl knsfcfcnvi tpvitdndcl lleaslssss wnitqtfqlk
      541 ncsqcihkse ctsckwtrvs pattcqdscn gtaskgitta qktehisihs ieplwistlg
      601 kseitvkgen ftrasgikli ltgvtgckpe iikvrnvlnd tqmtfalppt rkeaksiciq
      661 angkkcsppv tlhyvslpsc ssitpntswi sggrkittkg rnfnvvdsvi isddqrsnlt
      721 vsrcfgnese yhyltpslsh ategkvvdmm lkvettfipc vklhyhpdpv finyqlhtel
      781 dpdlelkiyk endnlniskt evevylsymn gaqtkkvwfs vqnitkkpdr stilckfkre
      841 gtdkidfstv kvfvklgnfe hevkptsshi ylyvlillpi vvgviivafi vtrykskelt
      901 rkqsqqlell eyeirkeire gfaelqmdel dvvdsfgtvp fldykhfalr tffpesggfa
      961 sifsedmpqs rdqtskdesf nmlhalicnk nflvtlihtl ekqknftvkd rclfasflti
     1021 alqtklvylt hilevltkdl meqssnvqpk lllrrtesvv eklltnwmsv clsgflreti
     1081 gepfyllvtt lnqrinkgpv daitckalyt lnedwllwqv sefktvtmnv ifekipenes
     1141 gdacqtiqvn vldcdtigqa kekslqafln kngflyglql devglelmse eqsrelldid
     1201 gssevmedgi rklntighye isngatikvf kkktntrsdv dysdehchli lpdseankdv
     1261 kgaghkgkqk fkvkemyltk llstkvaihs vveklfrsiw slpnnkapva ikyffdflda
     1321 qaeskkitdp dvvhiwktns lplrfwvnil knpqfvfdik ktshidgcls viaqafmdaf
     1381 slaeqtlgke aptnkllyak diplykkevk ayykairdlp plttaeveef ltqeskkhen
     1441 efnekvalie ihryivkyyd eivsklerer gfeevqkqlq qvkalfdekk kckwl
//
LOCUS       XP_053910616             734 aa            linear   VRT 09-MAR-2023
DEFINITION  centrosomal protein of 83 kDa isoform X1 [Cuculus canorus].
ACCESSION   XP_053910616
VERSION     XP_053910616.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054641.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..734
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..734
                     /product="centrosomal protein of 83 kDa isoform X1"
                     /calculated_mol_wt=86264
     Region          <142..>692
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..734
                     /gene="CEP83"
                     /coded_by="XM_054054641.1:10..2214"
                     /db_xref="GeneID:104058433"
ORIGIN      
        1 mprgarargg ggggshhtmd dldnllppmv gnndtansee lhkllidekv rsehhkanyq
       61 tmkaehlrlq eeytksqdel kqllvekqtv hdkfqcllae yqeellgktq eleklkmevl
      121 tpqklellka qiqqelesim teryrklene vekyrtdynk lryehtflks efehqkeeya
      181 rileekkiky eaeiarldkd keelhnqlls vdptrdskrv ealsrekaql cqklkgleae
      241 vaelraerdy cgvqaenvqr vqvrqlaemq altrsleaek ksaelqidri ekelrtsheq
      301 nilltsklhk serevnslaa qveelkhshk levinvklea avtkseveke rnkiqsemdg
      361 llsdkeilqa avehhkvllv ekdqelirkv qaakeeafek iaalqdekle lenrladlek
      421 tkleqdtwrq sekdqyeekl rvvqmaeess kkelqrlrlk iqqqaiqaee leekkresad
      481 lkqqihniql qlaslshsen dllesnqklk eiierlkqec qhakaqaeka qletekiley
      541 kriewmeekh altqriteke ekynqvkkkl craavaqkkr ktlndnkqrr teeklellea
      601 mveelekenq vlnrqnvsye dyarlqkrlk dlqrrhnefr rlilnpnips lnpfsmmsss
      661 alppqpevsf plqeeqhqre lsllrkrlee lettqrkqlq dlgpsrerlm vhayrdsarn
      721 tiigednaqs edsk
//
LOCUS       XP_053910623             729 aa            linear   VRT 09-MAR-2023
DEFINITION  centrosomal protein of 83 kDa isoform X2 [Cuculus canorus].
ACCESSION   XP_053910623
VERSION     XP_053910623.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054648.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..729
                     /product="centrosomal protein of 83 kDa isoform X2"
                     /calculated_mol_wt=85177
     Region          <48..638
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..729
                     /gene="CEP83"
                     /coded_by="XM_054054648.1:10..2199"
                     /db_xref="GeneID:104058433"
ORIGIN      
        1 mprgarargg ggggshhtmd dldnllppmv gnndtansee lhkllidekv rsehhkanyq
       61 tmkaehlrlq eeytksqdel kqllvekqtv hdkfqcllae yqeellgktq eleklkmevl
      121 tpqklellka qiqqelesim teryrklene vekyrtdynk lryehtflks efehqkeeya
      181 rileekkiky eaeiarldkd keelhnqlls vdptrdskrv ealsrekaql cqklkgleae
      241 vaelraerdy cgvqaenvqr vqvrqlaemq altrsleaek ksaelqidri ekelrtsheq
      301 nilltsklhk serevnslaa qveelkhshk levinvklea avtkseveke rnkiqsemdg
      361 llsdkeilqa avehhkvllv ekdqelirkv qaakeeafek iaalqdekle lenrladlek
      421 tkleqdtwrq sekdqyeekl rvvqmaeess kkelqrlrlk iqqqaiqaee leekkresad
      481 lkqqihniql qlaslshsen dllesnqklk eiierlkqec qhakaqaeka qletekiley
      541 kriewmeekh altqriteke ekynqvkkkl craavaqkkr ktlndnkqrr teeklellea
      601 mveelekenq vlnrqnvsye dyarlqkrlk dlqrrhnefr rlilnpnips lnpfsmmsss
      661 alppqpevsf plqvvmyyns hserggtask rafpasqavg rtrnhtekta arswtiqgai
      721 ngariqrls
//
LOCUS       XP_053910633             716 aa            linear   VRT 09-MAR-2023
DEFINITION  centrosomal protein of 83 kDa isoform X3 [Cuculus canorus].
ACCESSION   XP_053910633
VERSION     XP_053910633.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054658.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..716
                     /product="centrosomal protein of 83 kDa isoform X3"
                     /calculated_mol_wt=84563
     Region          <124..>674
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..716
                     /gene="CEP83"
                     /coded_by="XM_054054658.1:314..2464"
                     /db_xref="GeneID:104058433"
ORIGIN      
        1 mddldnllpp mvgnndtans eelhkllide kvrsehhkan yqtmkaehlr lqeeytksqd
       61 elkqllvekq tvhdkfqcll aeyqeellgk tqeleklkme vltpqklell kaqiqqeles
      121 imteryrkle nevekyrtdy nklryehtfl ksefehqkee yarileekki kyeaeiarld
      181 kdkeelhnql lsvdptrdsk rvealsreka qlcqklkgle aevaelraer dycgvqaenv
      241 qrvqvrqlae mqaltrslea ekksaelqid riekelrtsh eqnilltskl hkserevnsl
      301 aaqveelkhs hklevinvkl eaavtkseve kernkiqsem dgllsdkeil qaavehhkvl
      361 lvekdqelir kvqaakeeaf ekiaalqdek lelenrladl ektkleqdtw rqsekdqyee
      421 klrvvqmaee sskkelqrlr lkiqqqaiqa eeleekkres adlkqqihni qlqlaslshs
      481 endllesnqk lkeiierlkq ecqhakaqae kaqletekil eykriewmee khaltqrite
      541 keekynqvkk klcraavaqk krktlndnkq rrteeklell eamveeleke nqvlnrqnvs
      601 yedyarlqkr lkdlqrrhne frrlilnpni pslnpfsmms ssalppqpev sfplqeeqhq
      661 relsllrkrl eelettqrkq lqdlgpsrer lmvhayrdsa rntiigedna qsedsk
//
LOCUS       XP_053910636             716 aa            linear   VRT 09-MAR-2023
DEFINITION  centrosomal protein of 83 kDa isoform X3 [Cuculus canorus].
ACCESSION   XP_053910636
VERSION     XP_053910636.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054661.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..716
                     /product="centrosomal protein of 83 kDa isoform X3"
                     /calculated_mol_wt=84563
     Region          <124..>674
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..716
                     /gene="CEP83"
                     /coded_by="XM_054054661.1:221..2371"
                     /db_xref="GeneID:104058433"
ORIGIN      
        1 mddldnllpp mvgnndtans eelhkllide kvrsehhkan yqtmkaehlr lqeeytksqd
       61 elkqllvekq tvhdkfqcll aeyqeellgk tqeleklkme vltpqklell kaqiqqeles
      121 imteryrkle nevekyrtdy nklryehtfl ksefehqkee yarileekki kyeaeiarld
      181 kdkeelhnql lsvdptrdsk rvealsreka qlcqklkgle aevaelraer dycgvqaenv
      241 qrvqvrqlae mqaltrslea ekksaelqid riekelrtsh eqnilltskl hkserevnsl
      301 aaqveelkhs hklevinvkl eaavtkseve kernkiqsem dgllsdkeil qaavehhkvl
      361 lvekdqelir kvqaakeeaf ekiaalqdek lelenrladl ektkleqdtw rqsekdqyee
      421 klrvvqmaee sskkelqrlr lkiqqqaiqa eeleekkres adlkqqihni qlqlaslshs
      481 endllesnqk lkeiierlkq ecqhakaqae kaqletekil eykriewmee khaltqrite
      541 keekynqvkk klcraavaqk krktlndnkq rrteeklell eamveeleke nqvlnrqnvs
      601 yedyarlqkr lkdlqrrhne frrlilnpni pslnpfsmms ssalppqpev sfplqeeqhq
      661 relsllrkrl eelettqrkq lqdlgpsrer lmvhayrdsa rntiigedna qsedsk
//
LOCUS       XP_053910639             716 aa            linear   VRT 09-MAR-2023
DEFINITION  centrosomal protein of 83 kDa isoform X3 [Cuculus canorus].
ACCESSION   XP_053910639
VERSION     XP_053910639.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054664.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..716
                     /product="centrosomal protein of 83 kDa isoform X3"
                     /calculated_mol_wt=84563
     Region          <124..>674
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..716
                     /gene="CEP83"
                     /coded_by="XM_054054664.1:239..2389"
                     /db_xref="GeneID:104058433"
ORIGIN      
        1 mddldnllpp mvgnndtans eelhkllide kvrsehhkan yqtmkaehlr lqeeytksqd
       61 elkqllvekq tvhdkfqcll aeyqeellgk tqeleklkme vltpqklell kaqiqqeles
      121 imteryrkle nevekyrtdy nklryehtfl ksefehqkee yarileekki kyeaeiarld
      181 kdkeelhnql lsvdptrdsk rvealsreka qlcqklkgle aevaelraer dycgvqaenv
      241 qrvqvrqlae mqaltrslea ekksaelqid riekelrtsh eqnilltskl hkserevnsl
      301 aaqveelkhs hklevinvkl eaavtkseve kernkiqsem dgllsdkeil qaavehhkvl
      361 lvekdqelir kvqaakeeaf ekiaalqdek lelenrladl ektkleqdtw rqsekdqyee
      421 klrvvqmaee sskkelqrlr lkiqqqaiqa eeleekkres adlkqqihni qlqlaslshs
      481 endllesnqk lkeiierlkq ecqhakaqae kaqletekil eykriewmee khaltqrite
      541 keekynqvkk klcraavaqk krktlndnkq rrteeklell eamveeleke nqvlnrqnvs
      601 yedyarlqkr lkdlqrrhne frrlilnpni pslnpfsmms ssalppqpev sfplqeeqhq
      661 relsllrkrl eelettqrkq lqdlgpsrer lmvhayrdsa rntiigedna qsedsk
//
LOCUS       XP_053910644             716 aa            linear   VRT 09-MAR-2023
DEFINITION  centrosomal protein of 83 kDa isoform X3 [Cuculus canorus].
ACCESSION   XP_053910644
VERSION     XP_053910644.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054669.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..716
                     /product="centrosomal protein of 83 kDa isoform X3"
                     /calculated_mol_wt=84563
     Region          <124..>674
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..716
                     /gene="CEP83"
                     /coded_by="XM_054054669.1:213..2363"
                     /db_xref="GeneID:104058433"
ORIGIN      
        1 mddldnllpp mvgnndtans eelhkllide kvrsehhkan yqtmkaehlr lqeeytksqd
       61 elkqllvekq tvhdkfqcll aeyqeellgk tqeleklkme vltpqklell kaqiqqeles
      121 imteryrkle nevekyrtdy nklryehtfl ksefehqkee yarileekki kyeaeiarld
      181 kdkeelhnql lsvdptrdsk rvealsreka qlcqklkgle aevaelraer dycgvqaenv
      241 qrvqvrqlae mqaltrslea ekksaelqid riekelrtsh eqnilltskl hkserevnsl
      301 aaqveelkhs hklevinvkl eaavtkseve kernkiqsem dgllsdkeil qaavehhkvl
      361 lvekdqelir kvqaakeeaf ekiaalqdek lelenrladl ektkleqdtw rqsekdqyee
      421 klrvvqmaee sskkelqrlr lkiqqqaiqa eeleekkres adlkqqihni qlqlaslshs
      481 endllesnqk lkeiierlkq ecqhakaqae kaqletekil eykriewmee khaltqrite
      541 keekynqvkk klcraavaqk krktlndnkq rrteeklell eamveeleke nqvlnrqnvs
      601 yedyarlqkr lkdlqrrhne frrlilnpni pslnpfsmms ssalppqpev sfplqeeqhq
      661 relsllrkrl eelettqrkq lqdlgpsrer lmvhayrdsa rntiigedna qsedsk
//
LOCUS       XP_009558214             467 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane and coiled-coil domain protein 3 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009558214
VERSION     XP_009558214.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009559919.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..467
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..467
                     /product="transmembrane and coiled-coil domain protein 3
                     isoform X1"
                     /calculated_mol_wt=52412
     Region          64..453
                     /region_name="Tmemb_cc2"
                     /note="Predicted transmembrane and coiled-coil 2 protein;
                     pfam10267"
                     /db_xref="CDD:463036"
     CDS             1..467
                     /gene="TMCC3"
                     /coded_by="XM_009559919.2:94..1497"
                     /db_xref="GeneID:104058415"
ORIGIN      
        1 mpgsdtalav drtysdperh rrrktrverh dmntlslpln irrggsdtnl nfdvpdgvld
       61 fhkvklsads lkqkilkvte qikveqtard gnvaeylklv nsadkqqagr ikqvfekknq
      121 ksahsiaqlq kkleqyhkkl kdieqngssk stkdtskdiq hgksrasghg tessksgvpg
      181 vsltppvfvf sksrefanli rnkfgsadni ahlkntldef rpetssrtyg gsativakpk
      241 yvsddecssg tsgsadsngn tsfgptvast ldsqgklsvi leelreiket qsqladdien
      301 lkaqfkrdyg fisqmlqeer yryerledql ndltdlhqhe tanlkqelas ieekvayqay
      361 ersrdvqeal escqtrvskl elhqqeqqaq qsetvnakvl lgkcinvila fmtvilvcvs
      421 tiakfiapmm ksrfhiictf favtllaifc knwdhiicai ermiipr
//
LOCUS       XP_053910668             445 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane and coiled-coil domain protein 3 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053910668
VERSION     XP_053910668.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054693.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..445
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..445
                     /product="transmembrane and coiled-coil domain protein 3
                     isoform X2"
                     /calculated_mol_wt=49886
     Region          42..431
                     /region_name="Tmemb_cc2"
                     /note="Predicted transmembrane and coiled-coil 2 protein;
                     pfam10267"
                     /db_xref="CDD:463036"
     CDS             1..445
                     /gene="TMCC3"
                     /coded_by="XM_054054693.1:101..1438"
                     /db_xref="GeneID:104058415"
ORIGIN      
        1 mlrkverhdm ntlslplnir rggsdtnlnf dvpdgvldfh kvklsadslk qkilkvteqi
       61 kveqtardgn vaeylklvns adkqqagrik qvfekknqks ahsiaqlqkk leqyhkklkd
      121 ieqngsskst kdtskdiqhg ksrasghgte ssksgvpgvs ltppvfvfsk srefanlirn
      181 kfgsadniah lkntldefrp etssrtyggs ativakpkyv sddecssgts gsadsngnts
      241 fgptvastld sqgklsvile elreiketqs qladdienlk aqfkrdygfi sqmlqeeryr
      301 yerledqlnd ltdlhqheta nlkqelasie ekvayqayer srdvqeales cqtrvsklel
      361 hqqeqqaqqs etvnakvllg kcinvilafm tvilvcvsti akfiapmmks rfhiictffa
      421 vtllaifckn wdhiicaier miipr
//
LOCUS       XP_053910675             436 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane and coiled-coil domain protein 3 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053910675
VERSION     XP_053910675.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054700.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..436
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..436
                     /product="transmembrane and coiled-coil domain protein 3
                     isoform X3"
                     /calculated_mol_wt=48720
     Region          33..422
                     /region_name="Tmemb_cc2"
                     /note="Predicted transmembrane and coiled-coil 2 protein;
                     pfam10267"
                     /db_xref="CDD:463036"
     CDS             1..436
                     /gene="TMCC3"
                     /coded_by="XM_054054700.1:331..1641"
                     /db_xref="GeneID:104058415"
ORIGIN      
        1 mntlslplni rrggsdtnln fdvpdgvldf hkvklsadsl kqkilkvteq ikveqtardg
       61 nvaeylklvn sadkqqagri kqvfekknqk sahsiaqlqk kleqyhkklk dieqngssks
      121 tkdtskdiqh gksrasghgt essksgvpgv sltppvfvfs ksrefanlir nkfgsadnia
      181 hlkntldefr petssrtygg sativakpky vsddecssgt sgsadsngnt sfgptvastl
      241 dsqgklsvil eelreiketq sqladdienl kaqfkrdygf isqmlqeery ryerledqln
      301 dltdlhqhet anlkqelasi eekvayqaye rsrdvqeale scqtrvskle lhqqeqqaqq
      361 setvnakvll gkcinvilaf mtvilvcvst iakfiapmmk srfhiictff avtllaifck
      421 nwdhiicaie rmiipr
//
LOCUS       XP_053910682             436 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane and coiled-coil domain protein 3 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053910682
VERSION     XP_053910682.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054707.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..436
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..436
                     /product="transmembrane and coiled-coil domain protein 3
                     isoform X3"
                     /calculated_mol_wt=48720
     Region          33..422
                     /region_name="Tmemb_cc2"
                     /note="Predicted transmembrane and coiled-coil 2 protein;
                     pfam10267"
                     /db_xref="CDD:463036"
     CDS             1..436
                     /gene="TMCC3"
                     /coded_by="XM_054054707.1:290..1600"
                     /db_xref="GeneID:104058415"
ORIGIN      
        1 mntlslplni rrggsdtnln fdvpdgvldf hkvklsadsl kqkilkvteq ikveqtardg
       61 nvaeylklvn sadkqqagri kqvfekknqk sahsiaqlqk kleqyhkklk dieqngssks
      121 tkdtskdiqh gksrasghgt essksgvpgv sltppvfvfs ksrefanlir nkfgsadnia
      181 hlkntldefr petssrtygg sativakpky vsddecssgt sgsadsngnt sfgptvastl
      241 dsqgklsvil eelreiketq sqladdienl kaqfkrdygf isqmlqeery ryerledqln
      301 dltdlhqhet anlkqelasi eekvayqaye rsrdvqeale scqtrvskle lhqqeqqaqq
      361 setvnakvll gkcinvilaf mtvilvcvst iakfiapmmk srfhiictff avtllaifck
      421 nwdhiicaie rmiipr
//
LOCUS       XP_053910688             436 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane and coiled-coil domain protein 3 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053910688
VERSION     XP_053910688.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054713.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..436
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..436
                     /product="transmembrane and coiled-coil domain protein 3
                     isoform X3"
                     /calculated_mol_wt=48720
     Region          33..422
                     /region_name="Tmemb_cc2"
                     /note="Predicted transmembrane and coiled-coil 2 protein;
                     pfam10267"
                     /db_xref="CDD:463036"
     CDS             1..436
                     /gene="TMCC3"
                     /coded_by="XM_054054713.1:363..1673"
                     /db_xref="GeneID:104058415"
ORIGIN      
        1 mntlslplni rrggsdtnln fdvpdgvldf hkvklsadsl kqkilkvteq ikveqtardg
       61 nvaeylklvn sadkqqagri kqvfekknqk sahsiaqlqk kleqyhkklk dieqngssks
      121 tkdtskdiqh gksrasghgt essksgvpgv sltppvfvfs ksrefanlir nkfgsadnia
      181 hlkntldefr petssrtygg sativakpky vsddecssgt sgsadsngnt sfgptvastl
      241 dsqgklsvil eelreiketq sqladdienl kaqfkrdygf isqmlqeery ryerledqln
      301 dltdlhqhet anlkqelasi eekvayqaye rsrdvqeale scqtrvskle lhqqeqqaqq
      361 setvnakvll gkcinvilaf mtvilvcvst iakfiapmmk srfhiictff avtllaifck
      421 nwdhiicaie rmiipr
//
LOCUS       XP_053910697             436 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane and coiled-coil domain protein 3 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053910697
VERSION     XP_053910697.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054722.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..436
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..436
                     /product="transmembrane and coiled-coil domain protein 3
                     isoform X3"
                     /calculated_mol_wt=48720
     Region          33..422
                     /region_name="Tmemb_cc2"
                     /note="Predicted transmembrane and coiled-coil 2 protein;
                     pfam10267"
                     /db_xref="CDD:463036"
     CDS             1..436
                     /gene="TMCC3"
                     /coded_by="XM_054054722.1:139..1449"
                     /db_xref="GeneID:104058415"
ORIGIN      
        1 mntlslplni rrggsdtnln fdvpdgvldf hkvklsadsl kqkilkvteq ikveqtardg
       61 nvaeylklvn sadkqqagri kqvfekknqk sahsiaqlqk kleqyhkklk dieqngssks
      121 tkdtskdiqh gksrasghgt essksgvpgv sltppvfvfs ksrefanlir nkfgsadnia
      181 hlkntldefr petssrtygg sativakpky vsddecssgt sgsadsngnt sfgptvastl
      241 dsqgklsvil eelreiketq sqladdienl kaqfkrdygf isqmlqeery ryerledqln
      301 dltdlhqhet anlkqelasi eekvayqaye rsrdvqeale scqtrvskle lhqqeqqaqq
      361 setvnakvll gkcinvilaf mtvilvcvst iakfiapmmk srfhiictff avtllaifck
      421 nwdhiicaie rmiipr
//
LOCUS       XP_053910711            3162 aa            linear   VRT 09-MAR-2023
DEFINITION  FRAS1-related extracellular matrix protein 2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053910711
VERSION     XP_053910711.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054736.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3162
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3162
                     /product="FRAS1-related extracellular matrix protein 2
                     isoform X1"
                     /calculated_mol_wt=350634
     Region          47..263
                     /region_name="Frem_N"
                     /note="Frem protein N-terminal domain; pfam19309"
                     /db_xref="CDD:466034"
     Region          <313..373
                     /region_name="Cadherin_3"
                     /note="Cadherin-like; pfam16184"
                     /db_xref="CDD:465048"
     Region          399..515
                     /region_name="Cadherin_3"
                     /note="Cadherin-like; pfam16184"
                     /db_xref="CDD:465048"
     Region          519..662
                     /region_name="Cadherin_3"
                     /note="Cadherin-like; pfam16184"
                     /db_xref="CDD:465048"
     Region          669..776
                     /region_name="Cadherin_3"
                     /note="Cadherin-like; pfam16184"
                     /db_xref="CDD:465048"
     Region          806..911
                     /region_name="Cadherin_3"
                     /note="Cadherin-like; pfam16184"
                     /db_xref="CDD:465048"
     Region          913..1028
                     /region_name="Cadherin_3"
                     /note="Cadherin-like; pfam16184"
                     /db_xref="CDD:465048"
     Region          1043..1160
                     /region_name="Cadherin_3"
                     /note="Cadherin-like; pfam16184"
                     /db_xref="CDD:465048"
     Region          1164..1274
                     /region_name="Cadherin_3"
                     /note="Cadherin-like; pfam16184"
                     /db_xref="CDD:465048"
     Region          1276..1391
                     /region_name="Cadherin_3"
                     /note="Cadherin-like; pfam16184"
                     /db_xref="CDD:465048"
     Region          1396..1504
                     /region_name="Cadherin_3"
                     /note="Cadherin-like; pfam16184"
                     /db_xref="CDD:465048"
     Region          1506..1613
                     /region_name="Cadherin_3"
                     /note="Cadherin-like; pfam16184"
                     /db_xref="CDD:465048"
     Region          1631..1744
                     /region_name="Cadherin_3"
                     /note="Cadherin-like; pfam16184"
                     /db_xref="CDD:465048"
     Region          <1761..>1974
                     /region_name="caca"
                     /note="sodium/calcium exchanger 1; TIGR00845"
                     /db_xref="CDD:273296"
     Region          1998..2092
                     /region_name="Calx-beta"
                     /note="Calx-beta domain; cl02522"
                     /db_xref="CDD:413355"
     Region          <2119..>2333
                     /region_name="caca"
                     /note="sodium/calcium exchanger 1; TIGR00845"
                     /db_xref="CDD:273296"
     Region          2240..2331
                     /region_name="Calx-beta"
                     /note="Calx-beta domain; cl02522"
                     /db_xref="CDD:413355"
     CDS             1..3162
                     /gene="FREM2"
                     /coded_by="XM_054054736.1:36..9524"
                     /db_xref="GeneID:104066163"
ORIGIN      
        1 mmraalpaap rrllagllll agcaglgepq pgsaaasspw epeaaavvva nrglrvplgr
       61 sawldpardl vlrvqpgdrc hltvldedpl wqrpgrlspr rfpcdfgpre vrywhlggrs
      121 pardrvrlql rydsasralv lplalqvevl ftqleivtrn lplvverlrg tsspldarsl
      181 efafepgrqr crvgllppla glprygeivg ipaaaaaagg eaaggvpmpd smwdceeflr
      241 lglryrhtaa ggspnrdlvp lvaelreaag agallkreyf qvlvrirags envapkpsfl
      301 amlmmevdqf vltaltpdml aaedaetppd lllfnitspf gpgqghmvst ddrslpissf
      361 sqrdvrelri ayqppvedsd rerlfelele vldpegaase pfafvivvkp mntlapvvtr
      421 ntglllyegq srplsgpgps pnlvisdedd leqvrvsvva glrhghltll ddtpepaapr
      481 khftvaelaa grviyqhdgs esplsdnlvl rledggsrhr veflfpitvv ptddqpplln
      541 antgldmaeg etvpittral satdidsqda illftvesgp aagrlllrqv qpppdweded
      601 edesfswrrv agsagssiiy ekpvrewlqq divegrlyyh hfgphspgpa vvldqfvfrv
      661 qddndppnrs gpqtfmirvh pidrlapelh sssslhliva eqqvtplrrk hlcytdqdsg
      721 drelrytitq pptdtdsnhp pdvygarlgs lvltedhsve vthftqaqin hhkisyrppq
      781 eelgvaphli qfqyqvqdaa gnaaegtfti ylqpvdnqpp eitntgfnlp eggshvlspn
      841 eldasdtdte lahlrfiltq ppqygqlqls gyslipggvf gledirqgrv vyvhsgaetn
      901 sdtcgldvsd gvhfvpitlk mnvqpvddev prlrlppgtl gsyldvleng aaeitanviq
      961 gtdedtddlm ltfivedppq hgnilvqgvp aerfsqrdll dgavvyahtg geigllpked
     1021 afnltlsdls eewsvrgsvv qgvsvlvtil pvdsqapeif ageqfivmeg dkrvitpahl
     1081 raedvdtpnd dilctivaqp ssgyvenisp apgseksrag laisaftlkd lrqghifyvq
     1141 sihrgvepvk drfafrcsdg infsqrhffp iviipindee peifmrefvv megmslvidt
     1201 pilnaadadi ppdellftit rlprhghivn qlvngtvlve sftldqites snilyehdds
     1261 etkedsfevk ltdgkhtvrk tvlimvvpvd detprmaind gleiemgetr tihnrilkat
     1321 dldsedktlt yiirygpaqg llqrikpsgg venitlgmnf tqgevdrnli rymhfgqqgv
     1381 rdlikfdvtd ginplidryf yvtigsidiv fpdviskgvs lkeggkvtlt tdllstsdln
     1441 spdenlvfti trapvrghle ctdrpgvpis tftqlllagn kvyyihtsed evkmdsfefe
     1501 vtdgynpvfr tfrisisdvd nkkpvvtihn lvvseneykl itpfeltaed rdtpdallkf
     1561 iitqvpvhgr imfnsskpvt tftkqdlnen lisykhdgte svedsfsftv tdgthtdfyv
     1621 fpntvfetrk pqtmkirima vdnsvpqivi nkgaqtlril atghigflit nkvlkvedrd
     1681 slhvtlkiri teaprhgfli hlgkgnhsis hftqadiddm kicyvlrggd natsdifhfm
     1741 vedgggnrlt nqhfrlnwaw islekeyylv nedskyldvv lkrrgylget sfisistrdg
     1801 takkdkdfrg kaqkqvqfnp gqtlatwrvr ilsdgeheqs esfqivlsep vmavlefpdv
     1861 stveiidpgd estvfipqst ytveedvgel fipvrrsgdv sqelmvicyt hqgtasgtap
     1921 tsvlsysdyi srpedhnsil rfdkderekm crvviiddsl yeeaetfdvl lsmpmggrig
     1981 vefpstriti vpdkddepsf yfgndeyyvd esagyvevrv wrtgtdlska asvtvrsrks
     2041 epitaeagvd yvgisrnldf spgvnvqtfr vvilddlgqp vlegtekfel vlrmpmnaal
     2101 gepskatifi ndsvtdlpkm qfkesvyvgn endgqisami yrngdiryts tvrcytrqgs
     2161 aqvmmdfeer pntdssiitf lpgetekpct lvlmddtfhe eeeelrlvlg tarsdssfga
     2221 sigeqnetli kirddadkai ikfgetkfsv sepkdtkqva lvkipvlrlg dtskvsvvrv
     2281 htkdgsatsg edyhpiseei efkegetqhf veieilfdgv remreaftvh lrpdenmvae
     2341 iqtakaivyi eemnsmadvt fpsvpqvasl liyddtsrsk drsspiagyp vicitacnpk
     2401 yedfektgsi caseninntl tryrwlvsap tgpdgvtspm kevdfdtfft sskmitldsi
     2461 yfqagsrvqc aaravnsdgn eglelmspiv tistsegvcq prmsgvvgae pfsaklrytg
     2521 pedpdyanli kltvtmphid gmlpvistre lsnfeltlsp dgtrvgnhkc snlldytevk
     2581 thhgfltdat knpdvigeti pyqysptirg fntlrfyrnl nleaclwefv syydmsellt
     2641 dcggtigtdg qvlnlvqsyv tlrvplyvsy vfhspvgvgg wqhfdlqsel rltfvydtai
     2701 lwkdgigspp eaelqgslyp tsmriseegr lvvnfktear fhglfvmshp assltsmvms
     2761 adhpglmfsl slirseptyn qpvqqwsfvs dfavrdysgm ytvkliactt tpyqeyslpv
     2821 icnprepitf dldirfqqvs dpvaaefsln tqmfllskkt lwlsdgsmgf gqesdvafse
     2881 gdiiygrvmv dpvqnlgdsf ycsiekvflc tgadgyvpky npsnteygcl adspsllyrf
     2941 kivdkaqpet qatsfgnvlf naklaiddpe aiplvkqpgs dgfkvdstpl fqvslgrewy
     3001 vhtiytvrsk enanrgigkr sverqyhllf sggspgesmq rrqkrgveqs selakdigve
     3061 skrgtniqhi aldrtskkqv pqrevvvngv lprelnsesv gvsvvtiigg aaaillaicl
     3121 iaiiilllkr kqnsekrkat kdpgsnepmm lpynyssdss ev
//
LOCUS       XP_053910719            2656 aa            linear   VRT 09-MAR-2023
DEFINITION  FRAS1-related extracellular matrix protein 2 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053910719
VERSION     XP_053910719.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054744.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2656
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2656
                     /product="FRAS1-related extracellular matrix protein 2
                     isoform X2"
                     /calculated_mol_wt=294438
     Region          47..263
                     /region_name="Frem_N"
                     /note="Frem protein N-terminal domain; pfam19309"
                     /db_xref="CDD:466034"
     Region          <313..373
                     /region_name="Cadherin_3"
                     /note="Cadherin-like; pfam16184"
                     /db_xref="CDD:465048"
     Region          399..515
                     /region_name="Cadherin_3"
                     /note="Cadherin-like; pfam16184"
                     /db_xref="CDD:465048"
     Region          519..662
                     /region_name="Cadherin_3"
                     /note="Cadherin-like; pfam16184"
                     /db_xref="CDD:465048"
     Region          669..776
                     /region_name="Cadherin_3"
                     /note="Cadherin-like; pfam16184"
                     /db_xref="CDD:465048"
     Region          806..911
                     /region_name="Cadherin_3"
                     /note="Cadherin-like; pfam16184"
                     /db_xref="CDD:465048"
     Region          913..1028
                     /region_name="Cadherin_3"
                     /note="Cadherin-like; pfam16184"
                     /db_xref="CDD:465048"
     Region          1043..1160
                     /region_name="Cadherin_3"
                     /note="Cadherin-like; pfam16184"
                     /db_xref="CDD:465048"
     Region          1164..1274
                     /region_name="Cadherin_3"
                     /note="Cadherin-like; pfam16184"
                     /db_xref="CDD:465048"
     Region          1276..1391
                     /region_name="Cadherin_3"
                     /note="Cadherin-like; pfam16184"
                     /db_xref="CDD:465048"
     Region          1396..1504
                     /region_name="Cadherin_3"
                     /note="Cadherin-like; pfam16184"
                     /db_xref="CDD:465048"
     Region          1506..1613
                     /region_name="Cadherin_3"
                     /note="Cadherin-like; pfam16184"
                     /db_xref="CDD:465048"
     Region          1631..1744
                     /region_name="Cadherin_3"
                     /note="Cadherin-like; pfam16184"
                     /db_xref="CDD:465048"
     Region          <1761..>1974
                     /region_name="caca"
                     /note="sodium/calcium exchanger 1; TIGR00845"
                     /db_xref="CDD:273296"
     Region          1998..2092
                     /region_name="Calx-beta"
                     /note="Calx-beta domain; cl02522"
                     /db_xref="CDD:413355"
     Region          <2119..>2333
                     /region_name="caca"
                     /note="sodium/calcium exchanger 1; TIGR00845"
                     /db_xref="CDD:273296"
     Region          2240..2331
                     /region_name="Calx-beta"
                     /note="Calx-beta domain; cl02522"
                     /db_xref="CDD:413355"
     CDS             1..2656
                     /gene="FREM2"
                     /coded_by="XM_054054744.1:36..8006"
                     /db_xref="GeneID:104066163"
ORIGIN      
        1 mmraalpaap rrllagllll agcaglgepq pgsaaasspw epeaaavvva nrglrvplgr
       61 sawldpardl vlrvqpgdrc hltvldedpl wqrpgrlspr rfpcdfgpre vrywhlggrs
      121 pardrvrlql rydsasralv lplalqvevl ftqleivtrn lplvverlrg tsspldarsl
      181 efafepgrqr crvgllppla glprygeivg ipaaaaaagg eaaggvpmpd smwdceeflr
      241 lglryrhtaa ggspnrdlvp lvaelreaag agallkreyf qvlvrirags envapkpsfl
      301 amlmmevdqf vltaltpdml aaedaetppd lllfnitspf gpgqghmvst ddrslpissf
      361 sqrdvrelri ayqppvedsd rerlfelele vldpegaase pfafvivvkp mntlapvvtr
      421 ntglllyegq srplsgpgps pnlvisdedd leqvrvsvva glrhghltll ddtpepaapr
      481 khftvaelaa grviyqhdgs esplsdnlvl rledggsrhr veflfpitvv ptddqpplln
      541 antgldmaeg etvpittral satdidsqda illftvesgp aagrlllrqv qpppdweded
      601 edesfswrrv agsagssiiy ekpvrewlqq divegrlyyh hfgphspgpa vvldqfvfrv
      661 qddndppnrs gpqtfmirvh pidrlapelh sssslhliva eqqvtplrrk hlcytdqdsg
      721 drelrytitq pptdtdsnhp pdvygarlgs lvltedhsve vthftqaqin hhkisyrppq
      781 eelgvaphli qfqyqvqdaa gnaaegtfti ylqpvdnqpp eitntgfnlp eggshvlspn
      841 eldasdtdte lahlrfiltq ppqygqlqls gyslipggvf gledirqgrv vyvhsgaetn
      901 sdtcgldvsd gvhfvpitlk mnvqpvddev prlrlppgtl gsyldvleng aaeitanviq
      961 gtdedtddlm ltfivedppq hgnilvqgvp aerfsqrdll dgavvyahtg geigllpked
     1021 afnltlsdls eewsvrgsvv qgvsvlvtil pvdsqapeif ageqfivmeg dkrvitpahl
     1081 raedvdtpnd dilctivaqp ssgyvenisp apgseksrag laisaftlkd lrqghifyvq
     1141 sihrgvepvk drfafrcsdg infsqrhffp iviipindee peifmrefvv megmslvidt
     1201 pilnaadadi ppdellftit rlprhghivn qlvngtvlve sftldqites snilyehdds
     1261 etkedsfevk ltdgkhtvrk tvlimvvpvd detprmaind gleiemgetr tihnrilkat
     1321 dldsedktlt yiirygpaqg llqrikpsgg venitlgmnf tqgevdrnli rymhfgqqgv
     1381 rdlikfdvtd ginplidryf yvtigsidiv fpdviskgvs lkeggkvtlt tdllstsdln
     1441 spdenlvfti trapvrghle ctdrpgvpis tftqlllagn kvyyihtsed evkmdsfefe
     1501 vtdgynpvfr tfrisisdvd nkkpvvtihn lvvseneykl itpfeltaed rdtpdallkf
     1561 iitqvpvhgr imfnsskpvt tftkqdlnen lisykhdgte svedsfsftv tdgthtdfyv
     1621 fpntvfetrk pqtmkirima vdnsvpqivi nkgaqtlril atghigflit nkvlkvedrd
     1681 slhvtlkiri teaprhgfli hlgkgnhsis hftqadiddm kicyvlrggd natsdifhfm
     1741 vedgggnrlt nqhfrlnwaw islekeyylv nedskyldvv lkrrgylget sfisistrdg
     1801 takkdkdfrg kaqkqvqfnp gqtlatwrvr ilsdgeheqs esfqivlsep vmavlefpdv
     1861 stveiidpgd estvfipqst ytveedvgel fipvrrsgdv sqelmvicyt hqgtasgtap
     1921 tsvlsysdyi srpedhnsil rfdkderekm crvviiddsl yeeaetfdvl lsmpmggrig
     1981 vefpstriti vpdkddepsf yfgndeyyvd esagyvevrv wrtgtdlska asvtvrsrks
     2041 epitaeagvd yvgisrnldf spgvnvqtfr vvilddlgqp vlegtekfel vlrmpmnaal
     2101 gepskatifi ndsvtdlpkm qfkesvyvgn endgqisami yrngdiryts tvrcytrqgs
     2161 aqvmmdfeer pntdssiitf lpgetekpct lvlmddtfhe eeeelrlvlg tarsdssfga
     2221 sigeqnetli kirddadkai ikfgetkfsv sepkdtkqva lvkipvlrlg dtskvsvvrv
     2281 htkdgsatsg edyhpiseei efkegetqhf veieilfdgv remreaftvh lrpdenmvae
     2341 iqtakaivyi eemnsmadvt fpsvpqvasl liyddtsrsk drsspiagyp vicitacnpk
     2401 yedfektgsi caseninntl tryrwlvsap tgpdgvtspm kevdfdtfft sskmitldsi
     2461 yfqagsrvqc aaravnsdgn eglelmspiv tistsegvcq prmsgvvgae pfsaklrytg
     2521 pedpdyanli kltvtmphid gmlpvistre lsnfeltlsp dgtrvgnhkc snlldytevk
     2581 thhgfltdat knpdvigeti pyqysptirg fntlrfyrnl nleaclwefv syydmsellt
     2641 dcggtigtdg qlqthv
//
LOCUS       XP_053910729             325 aa            linear   VRT 09-MAR-2023
DEFINITION  ribose-phosphate pyrophosphokinase 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053910729
VERSION     XP_053910729.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054754.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..325
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..325
                     /product="ribose-phosphate pyrophosphokinase 2 isoform X1"
                     /calculated_mol_wt=35576
     Region          1..321
                     /region_name="PrsA"
                     /note="Phosphoribosylpyrophosphate synthetase [Nucleotide
                     transport and metabolism]; COG0462"
                     /db_xref="CDD:440230"
     CDS             1..325
                     /gene="PRPS2"
                     /coded_by="XM_054054754.1:83..1060"
                     /db_xref="GeneID:104054890"
ORIGIN      
        1 mpnivlfsgs shhdlsqrva drlglelgkv vtkkfsnqet sveigesvrg edvyiiqsgc
       61 geindnlmel liminackia sasrvtavip cfpyarqdkk dkkgsverws rapisaklva
      121 nmlsvagadh iitmdlhasq iqgffdipvd nlyaepavlq wikenilewr nciivspdag
      181 gakrvtsiad rlnvefalih kerkkanevd rmvlvgdvkd rvailvddma dtcgtichaa
      241 dklvsagatk vyailthgif sgpaisrinn asfeavvvtn tipqeekmkh cpkiqfidis
      301 milaeairrt hngesvsylf shvpl
//
LOCUS       XP_053910736             318 aa            linear   VRT 09-MAR-2023
DEFINITION  ribose-phosphate pyrophosphokinase 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053910736
VERSION     XP_053910736.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054761.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="ribose-phosphate pyrophosphokinase 2 isoform X2"
                     /calculated_mol_wt=34733
     Region          1..314
                     /region_name="PrsA"
                     /note="Phosphoribosylpyrophosphate synthetase [Nucleotide
                     transport and metabolism]; COG0462"
                     /db_xref="CDD:440230"
     CDS             1..318
                     /gene="PRPS2"
                     /coded_by="XM_054054761.1:83..1039"
                     /db_xref="GeneID:104054890"
ORIGIN      
        1 mpnivlfsgs shhdlsqrva drlglelgkv vtkkfsnqet sveigesvrg edvyiiqsgc
       61 geindnlmel liminackia sasrvtavip cfpyarqdkk dksrapisak lvanmlsvag
      121 adhiitmdlh asqiqgffdi pvdnlyaepa vlqwikenil ewrnciivsp daggakrvts
      181 iadrlnvefa lihkerkkan evdrmvlvgd vkdrvailvd dmadtcgtic haadklvsag
      241 atkvyailth gifsgpaisr innasfeavv vtntipqeek mkhcpkiqfi dismilaeai
      301 rrthngesvs ylfshvpl
//
LOCUS       XP_009569855             291 aa            linear   VRT 09-MAR-2023
DEFINITION  ecto-ADP-ribosyltransferase 4 [Cuculus canorus].
ACCESSION   XP_009569855
VERSION     XP_009569855.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009571560.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009569855.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..291
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..291
                     /product="ecto-ADP-ribosyltransferase 4"
                     /calculated_mol_wt=33417
     Region          25..252
                     /region_name="VIP2"
                     /note="A family of actin-ADP-ribosylating toxin. A member
                     of the Bacillus-prodiced vegetative insecticidal proteins
                     (VIPs) possesses high specificity against the major insect
                     pest, corn rootworms, and belongs to a classs of binary
                     toxins and regulators of...; cl00173"
                     /db_xref="CDD:469640"
     CDS             1..291
                     /gene="ART4"
                     /coded_by="XM_009571560.2:451..1326"
                     /db_xref="GeneID:104068657"
ORIGIN      
        1 mmpallasll fliflqrlav shlmmdmalh sfddqylgcr eqvieelerg dyfqkeiaan
       61 kdylsvwkka qvaflkspvg llrdmresha ivlmaytmns slhsqlnwat stagkspehy
      121 rhkfsfkyfh fylttaiqim kkwqsnkesm gknkcylvhr gvkdlyieam vgsrvrfgrf
      181 tstsrlwnea rkfgnetlft vttcmgaamq gfsfytseke vlvppyelfl vksffrtqhg
      241 nrlhlhsvgn yskyhcqlve asrsknsgpt vlisvflpgl vgiflhmvcn l
//
LOCUS       XP_053910754             291 aa            linear   VRT 09-MAR-2023
DEFINITION  ecto-ADP-ribosyltransferase 4 [Cuculus canorus].
ACCESSION   XP_053910754
VERSION     XP_053910754.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054779.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..291
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..291
                     /product="ecto-ADP-ribosyltransferase 4"
                     /calculated_mol_wt=33417
     Region          25..252
                     /region_name="VIP2"
                     /note="A family of actin-ADP-ribosylating toxin. A member
                     of the Bacillus-prodiced vegetative insecticidal proteins
                     (VIPs) possesses high specificity against the major insect
                     pest, corn rootworms, and belongs to a classs of binary
                     toxins and regulators of...; cl00173"
                     /db_xref="CDD:469640"
     CDS             1..291
                     /gene="ART4"
                     /coded_by="XM_054054779.1:451..1326"
                     /db_xref="GeneID:104068657"
ORIGIN      
        1 mmpallasll fliflqrlav shlmmdmalh sfddqylgcr eqvieelerg dyfqkeiaan
       61 kdylsvwkka qvaflkspvg llrdmresha ivlmaytmns slhsqlnwat stagkspehy
      121 rhkfsfkyfh fylttaiqim kkwqsnkesm gknkcylvhr gvkdlyieam vgsrvrfgrf
      181 tstsrlwnea rkfgnetlft vttcmgaamq gfsfytseke vlvppyelfl vksffrtqhg
      241 nrlhlhsvgn yskyhcqlve asrsknsgpt vlisvflpgl vgiflhmvcn l
//
LOCUS       XP_053910758             291 aa            linear   VRT 09-MAR-2023
DEFINITION  ecto-ADP-ribosyltransferase 4 [Cuculus canorus].
ACCESSION   XP_053910758
VERSION     XP_053910758.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054783.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..291
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..291
                     /product="ecto-ADP-ribosyltransferase 4"
                     /calculated_mol_wt=33417
     Region          25..252
                     /region_name="VIP2"
                     /note="A family of actin-ADP-ribosylating toxin. A member
                     of the Bacillus-prodiced vegetative insecticidal proteins
                     (VIPs) possesses high specificity against the major insect
                     pest, corn rootworms, and belongs to a classs of binary
                     toxins and regulators of...; cl00173"
                     /db_xref="CDD:469640"
     CDS             1..291
                     /gene="ART4"
                     /coded_by="XM_054054783.1:451..1326"
                     /db_xref="GeneID:104068657"
ORIGIN      
        1 mmpallasll fliflqrlav shlmmdmalh sfddqylgcr eqvieelerg dyfqkeiaan
       61 kdylsvwkka qvaflkspvg llrdmresha ivlmaytmns slhsqlnwat stagkspehy
      121 rhkfsfkyfh fylttaiqim kkwqsnkesm gknkcylvhr gvkdlyieam vgsrvrfgrf
      181 tstsrlwnea rkfgnetlft vttcmgaamq gfsfytseke vlvppyelfl vksffrtqhg
      241 nrlhlhsvgn yskyhcqlve asrsknsgpt vlisvflpgl vgiflhmvcn l
//
LOCUS       XP_053910765             291 aa            linear   VRT 09-MAR-2023
DEFINITION  ecto-ADP-ribosyltransferase 4 [Cuculus canorus].
ACCESSION   XP_053910765
VERSION     XP_053910765.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054790.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..291
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..291
                     /product="ecto-ADP-ribosyltransferase 4"
                     /calculated_mol_wt=33417
     Region          25..252
                     /region_name="VIP2"
                     /note="A family of actin-ADP-ribosylating toxin. A member
                     of the Bacillus-prodiced vegetative insecticidal proteins
                     (VIPs) possesses high specificity against the major insect
                     pest, corn rootworms, and belongs to a classs of binary
                     toxins and regulators of...; cl00173"
                     /db_xref="CDD:469640"
     CDS             1..291
                     /gene="ART4"
                     /coded_by="XM_054054790.1:451..1326"
                     /db_xref="GeneID:104068657"
ORIGIN      
        1 mmpallasll fliflqrlav shlmmdmalh sfddqylgcr eqvieelerg dyfqkeiaan
       61 kdylsvwkka qvaflkspvg llrdmresha ivlmaytmns slhsqlnwat stagkspehy
      121 rhkfsfkyfh fylttaiqim kkwqsnkesm gknkcylvhr gvkdlyieam vgsrvrfgrf
      181 tstsrlwnea rkfgnetlft vttcmgaamq gfsfytseke vlvppyelfl vksffrtqhg
      241 nrlhlhsvgn yskyhcqlve asrsknsgpt vlisvflpgl vgiflhmvcn l
//
LOCUS       XP_053910777             225 aa            linear   VRT 09-MAR-2023
DEFINITION  single-pass membrane and coiled-coil domain-containing protein 3
            [Cuculus canorus].
ACCESSION   XP_053910777
VERSION     XP_053910777.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054802.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..225
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..225
                     /product="single-pass membrane and coiled-coil
                     domain-containing protein 3"
                     /calculated_mol_wt=25069
     Region          14..221
                     /region_name="DUF4533"
                     /note="Protein of unknown function (DUF4533); pfam15047"
                     /db_xref="CDD:464469"
     CDS             1..225
                     /gene="SMCO3"
                     /coded_by="XM_054054802.1:4082..4759"
                     /db_xref="GeneID:104068645"
ORIGIN      
        1 malsdllypd npkrrqelih lhqellncms infhatnelv gvlneqlgct iariqmress
       61 tvkencdiii ramseiqhql qkidsdmkek lepvlyqrly dikepeleki aiahkvfsiv
      121 lgeatstagm vavkllssnf itlavsklis llaqigasvl ggisitilgl giemilhail
      181 gavernqlle avrsyekhld efkaasekyq rdiqevaslv rqqvq
//
LOCUS       XP_053910785             225 aa            linear   VRT 09-MAR-2023
DEFINITION  single-pass membrane and coiled-coil domain-containing protein 3
            [Cuculus canorus].
ACCESSION   XP_053910785
VERSION     XP_053910785.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054810.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..225
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..225
                     /product="single-pass membrane and coiled-coil
                     domain-containing protein 3"
                     /calculated_mol_wt=25069
     Region          14..221
                     /region_name="DUF4533"
                     /note="Protein of unknown function (DUF4533); pfam15047"
                     /db_xref="CDD:464469"
     CDS             1..225
                     /gene="SMCO3"
                     /coded_by="XM_054054810.1:4080..4757"
                     /db_xref="GeneID:104068645"
ORIGIN      
        1 malsdllypd npkrrqelih lhqellncms infhatnelv gvlneqlgct iariqmress
       61 tvkencdiii ramseiqhql qkidsdmkek lepvlyqrly dikepeleki aiahkvfsiv
      121 lgeatstagm vavkllssnf itlavsklis llaqigasvl ggisitilgl giemilhail
      181 gavernqlle avrsyekhld efkaasekyq rdiqevaslv rqqvq
//
LOCUS       XP_053910794             442 aa            linear   VRT 09-MAR-2023
DEFINITION  periphilin-1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053910794
VERSION     XP_053910794.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054819.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..442
                     /product="periphilin-1 isoform X1"
                     /calculated_mol_wt=51062
     Region          329..>377
                     /region_name="ps-ssRNAv_RdRp-like"
                     /note="conserved catalytic core domain of RNA-dependent
                     RNA polymerase (RdRp) from the positive-sense
                     single-stranded RNA [(+)ssRNA] viruses and closely related
                     viruses; cl40470"
                     /db_xref="CDD:477363"
     Region          364..428
                     /region_name="periphilin-like"
                     /note="Vertebrate periphilin-1 and similar proteins;
                     cd22896"
                     /db_xref="CDD:439377"
     Site            order(365..366,369,372,375..376,379..380,383,401,404..405,
                     408..409,412..413,415..416,419..420,423)
                     /site_type="other"
                     /note="heterotrimer interface [polypeptide binding]"
                     /db_xref="CDD:439377"
     CDS             1..442
                     /gene="PPHLN1"
                     /coded_by="XM_054054819.1:1745..3073"
                     /db_xref="GeneID:104062403"
ORIGIN      
        1 mayrrdemws eerydyervp rerlpprihp dddyhrvvnv vpkkppller pgdgnysryd
       61 dynhaeyrdy degrgfahdr rsgpphrgvr knesgyrwpr ddhpisrqpe yrdvrdgfrr
      121 ksfypshyvr drsphkrdsp ffrespgsrr dsphsrsgss vssrsysper skaypfhqsq
      181 hsrsmsslhk rnissqqgke rtsvqslkts rdaspsgsta ipsskaleks nrlsekelae
      241 aaskwaaeks ekadesnlpe iteydagssa plyveqteet etnvmdntel yedghllgrs
      301 kaiatkmkei eqgswltgev pvdwkladvv piykkrcred agnyrpvslt svpgkvmeqm
      361 ilsaimkhmq enqvyrqdce tfgmvvkmli dkdpsleksi qfalrqnlhe igercieelk
      421 hfiaqydaan qdlsesfkeg sy
//
LOCUS       XP_053910800             442 aa            linear   VRT 09-MAR-2023
DEFINITION  periphilin-1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053910800
VERSION     XP_053910800.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054825.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..442
                     /product="periphilin-1 isoform X1"
                     /calculated_mol_wt=51062
     Region          329..>377
                     /region_name="ps-ssRNAv_RdRp-like"
                     /note="conserved catalytic core domain of RNA-dependent
                     RNA polymerase (RdRp) from the positive-sense
                     single-stranded RNA [(+)ssRNA] viruses and closely related
                     viruses; cl40470"
                     /db_xref="CDD:477363"
     Region          364..428
                     /region_name="periphilin-like"
                     /note="Vertebrate periphilin-1 and similar proteins;
                     cd22896"
                     /db_xref="CDD:439377"
     Site            order(365..366,369,372,375..376,379..380,383,401,404..405,
                     408..409,412..413,415..416,419..420,423)
                     /site_type="other"
                     /note="heterotrimer interface [polypeptide binding]"
                     /db_xref="CDD:439377"
     CDS             1..442
                     /gene="PPHLN1"
                     /coded_by="XM_054054825.1:72..1400"
                     /db_xref="GeneID:104062403"
ORIGIN      
        1 mayrrdemws eerydyervp rerlpprihp dddyhrvvnv vpkkppller pgdgnysryd
       61 dynhaeyrdy degrgfahdr rsgpphrgvr knesgyrwpr ddhpisrqpe yrdvrdgfrr
      121 ksfypshyvr drsphkrdsp ffrespgsrr dsphsrsgss vssrsysper skaypfhqsq
      181 hsrsmsslhk rnissqqgke rtsvqslkts rdaspsgsta ipsskaleks nrlsekelae
      241 aaskwaaeks ekadesnlpe iteydagssa plyveqteet etnvmdntel yedghllgrs
      301 kaiatkmkei eqgswltgev pvdwkladvv piykkrcred agnyrpvslt svpgkvmeqm
      361 ilsaimkhmq enqvyrqdce tfgmvvkmli dkdpsleksi qfalrqnlhe igercieelk
      421 hfiaqydaan qdlsesfkeg sy
//
LOCUS       XP_053910808             442 aa            linear   VRT 09-MAR-2023
DEFINITION  periphilin-1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053910808
VERSION     XP_053910808.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054833.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..442
                     /product="periphilin-1 isoform X1"
                     /calculated_mol_wt=51062
     Region          329..>377
                     /region_name="ps-ssRNAv_RdRp-like"
                     /note="conserved catalytic core domain of RNA-dependent
                     RNA polymerase (RdRp) from the positive-sense
                     single-stranded RNA [(+)ssRNA] viruses and closely related
                     viruses; cl40470"
                     /db_xref="CDD:477363"
     Region          364..428
                     /region_name="periphilin-like"
                     /note="Vertebrate periphilin-1 and similar proteins;
                     cd22896"
                     /db_xref="CDD:439377"
     Site            order(365..366,369,372,375..376,379..380,383,401,404..405,
                     408..409,412..413,415..416,419..420,423)
                     /site_type="other"
                     /note="heterotrimer interface [polypeptide binding]"
                     /db_xref="CDD:439377"
     CDS             1..442
                     /gene="PPHLN1"
                     /coded_by="XM_054054833.1:1451..2779"
                     /db_xref="GeneID:104062403"
ORIGIN      
        1 mayrrdemws eerydyervp rerlpprihp dddyhrvvnv vpkkppller pgdgnysryd
       61 dynhaeyrdy degrgfahdr rsgpphrgvr knesgyrwpr ddhpisrqpe yrdvrdgfrr
      121 ksfypshyvr drsphkrdsp ffrespgsrr dsphsrsgss vssrsysper skaypfhqsq
      181 hsrsmsslhk rnissqqgke rtsvqslkts rdaspsgsta ipsskaleks nrlsekelae
      241 aaskwaaeks ekadesnlpe iteydagssa plyveqteet etnvmdntel yedghllgrs
      301 kaiatkmkei eqgswltgev pvdwkladvv piykkrcred agnyrpvslt svpgkvmeqm
      361 ilsaimkhmq enqvyrqdce tfgmvvkmli dkdpsleksi qfalrqnlhe igercieelk
      421 hfiaqydaan qdlsesfkeg sy
//
LOCUS       XP_053910817             442 aa            linear   VRT 09-MAR-2023
DEFINITION  periphilin-1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053910817
VERSION     XP_053910817.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054842.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..442
                     /product="periphilin-1 isoform X1"
                     /calculated_mol_wt=51062
     Region          329..>377
                     /region_name="ps-ssRNAv_RdRp-like"
                     /note="conserved catalytic core domain of RNA-dependent
                     RNA polymerase (RdRp) from the positive-sense
                     single-stranded RNA [(+)ssRNA] viruses and closely related
                     viruses; cl40470"
                     /db_xref="CDD:477363"
     Region          364..428
                     /region_name="periphilin-like"
                     /note="Vertebrate periphilin-1 and similar proteins;
                     cd22896"
                     /db_xref="CDD:439377"
     Site            order(365..366,369,372,375..376,379..380,383,401,404..405,
                     408..409,412..413,415..416,419..420,423)
                     /site_type="other"
                     /note="heterotrimer interface [polypeptide binding]"
                     /db_xref="CDD:439377"
     CDS             1..442
                     /gene="PPHLN1"
                     /coded_by="XM_054054842.1:486..1814"
                     /db_xref="GeneID:104062403"
ORIGIN      
        1 mayrrdemws eerydyervp rerlpprihp dddyhrvvnv vpkkppller pgdgnysryd
       61 dynhaeyrdy degrgfahdr rsgpphrgvr knesgyrwpr ddhpisrqpe yrdvrdgfrr
      121 ksfypshyvr drsphkrdsp ffrespgsrr dsphsrsgss vssrsysper skaypfhqsq
      181 hsrsmsslhk rnissqqgke rtsvqslkts rdaspsgsta ipsskaleks nrlsekelae
      241 aaskwaaeks ekadesnlpe iteydagssa plyveqteet etnvmdntel yedghllgrs
      301 kaiatkmkei eqgswltgev pvdwkladvv piykkrcred agnyrpvslt svpgkvmeqm
      361 ilsaimkhmq enqvyrqdce tfgmvvkmli dkdpsleksi qfalrqnlhe igercieelk
      421 hfiaqydaan qdlsesfkeg sy
//
LOCUS       XP_053910826             439 aa            linear   VRT 09-MAR-2023
DEFINITION  periphilin-1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053910826
VERSION     XP_053910826.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054851.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..439
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..439
                     /product="periphilin-1 isoform X2"
                     /calculated_mol_wt=50678
     Region          326..>374
                     /region_name="ps-ssRNAv_RdRp-like"
                     /note="conserved catalytic core domain of RNA-dependent
                     RNA polymerase (RdRp) from the positive-sense
                     single-stranded RNA [(+)ssRNA] viruses and closely related
                     viruses; cl40470"
                     /db_xref="CDD:477363"
     Region          361..425
                     /region_name="periphilin-like"
                     /note="Vertebrate periphilin-1 and similar proteins;
                     cd22896"
                     /db_xref="CDD:439377"
     Site            order(362..363,366,369,372..373,376..377,380,398,401..402,
                     405..406,409..410,412..413,416..417,420)
                     /site_type="other"
                     /note="heterotrimer interface [polypeptide binding]"
                     /db_xref="CDD:439377"
     CDS             1..439
                     /gene="PPHLN1"
                     /coded_by="XM_054054851.1:1745..3064"
                     /db_xref="GeneID:104062403"
ORIGIN      
        1 mayrrdemws eerydyervp rerlpprihp dddyhrvvnv vpkkppller pgdgnysryd
       61 dynhaeyrdy degrgfahdr rsgpphrgne sgyrwprddh pisrqpeyrd vrdgfrrksf
      121 ypshyvrdrs phkrdspffr espgsrrdsp hsrsgssvss rsysperska ypfhqsqhsr
      181 smsslhkrni ssqqgkerts vqslktsrda spsgstaips skaleksnrl sekelaeaas
      241 kwaaekseka desnlpeite ydagssaply veqteetetn vmdntelyed ghllgrskai
      301 atkmkeieqg swltgevpvd wkladvvpiy kkrcredagn yrpvsltsvp gkvmeqmils
      361 aimkhmqenq vyrqdcetfg mvvkmlidkd psleksiqfa lrqnlheige rcieelkhfi
      421 aqydaanqdl sesfkegsy
//
LOCUS       XP_053910832             428 aa            linear   VRT 09-MAR-2023
DEFINITION  periphilin-1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053910832
VERSION     XP_053910832.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054857.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..428
                     /product="periphilin-1 isoform X3"
                     /calculated_mol_wt=49507
     Region          315..>363
                     /region_name="ps-ssRNAv_RdRp-like"
                     /note="conserved catalytic core domain of RNA-dependent
                     RNA polymerase (RdRp) from the positive-sense
                     single-stranded RNA [(+)ssRNA] viruses and closely related
                     viruses; cl40470"
                     /db_xref="CDD:477363"
     Region          350..414
                     /region_name="periphilin-like"
                     /note="Vertebrate periphilin-1 and similar proteins;
                     cd22896"
                     /db_xref="CDD:439377"
     Site            order(351..352,355,358,361..362,365..366,369,387,390..391,
                     394..395,398..399,401..402,405..406,409)
                     /site_type="other"
                     /note="heterotrimer interface [polypeptide binding]"
                     /db_xref="CDD:439377"
     CDS             1..428
                     /gene="PPHLN1"
                     /coded_by="XM_054054857.1:1745..3031"
                     /db_xref="GeneID:104062403"
ORIGIN      
        1 mayrrdemws eerydyervp rerlpprihp dddyhrvvnv vpkkppller pgdgnysryd
       61 dynhaeyrdy degrgfahdr rsgpphrgvr knesgyrwpr ddhpisrqpe yrdvrdgfrr
      121 ksfypshyvr drsphkrdsp ffrespgsrr dsphsrsgss vssrsysper skaypfhqsq
      181 hsrskertsv qslktsrdas psgstaipss kaleksnrls ekelaeaask waaeksekad
      241 esnlpeitey dagssaplyv eqteetetnv mdntelyedg hllgrskaia tkmkeieqgs
      301 wltgevpvdw kladvvpiyk krcredagny rpvsltsvpg kvmeqmilsa imkhmqenqv
      361 yrqdcetfgm vvkmlidkdp sleksiqfal rqnlheiger cieelkhfia qydaanqdls
      421 esfkegsy
//
LOCUS       XP_053910838             425 aa            linear   VRT 09-MAR-2023
DEFINITION  periphilin-1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053910838
VERSION     XP_053910838.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054863.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..425
                     /product="periphilin-1 isoform X4"
                     /calculated_mol_wt=49123
     Region          312..>360
                     /region_name="ps-ssRNAv_RdRp-like"
                     /note="conserved catalytic core domain of RNA-dependent
                     RNA polymerase (RdRp) from the positive-sense
                     single-stranded RNA [(+)ssRNA] viruses and closely related
                     viruses; cl40470"
                     /db_xref="CDD:477363"
     Region          347..411
                     /region_name="periphilin-like"
                     /note="Vertebrate periphilin-1 and similar proteins;
                     cd22896"
                     /db_xref="CDD:439377"
     Site            order(348..349,352,355,358..359,362..363,366,384,387..388,
                     391..392,395..396,398..399,402..403,406)
                     /site_type="other"
                     /note="heterotrimer interface [polypeptide binding]"
                     /db_xref="CDD:439377"
     CDS             1..425
                     /gene="PPHLN1"
                     /coded_by="XM_054054863.1:1745..3022"
                     /db_xref="GeneID:104062403"
ORIGIN      
        1 mayrrdemws eerydyervp rerlpprihp dddyhrvvnv vpkkppller pgdgnysryd
       61 dynhaeyrdy degrgfahdr rsgpphrgne sgyrwprddh pisrqpeyrd vrdgfrrksf
      121 ypshyvrdrs phkrdspffr espgsrrdsp hsrsgssvss rsysperska ypfhqsqhsr
      181 skertsvqsl ktsrdaspsg staipsskal eksnrlseke laeaaskwaa eksekadesn
      241 lpeiteydag ssaplyveqt eetetnvmdn telyedghll grskaiatkm keieqgswlt
      301 gevpvdwkla dvvpiykkrc redagnyrpv sltsvpgkvm eqmilsaimk hmqenqvyrq
      361 dcetfgmvvk mlidkdpsle ksiqfalrqn lheigercie elkhfiaqyd aanqdlsesf
      421 kegsy
//
LOCUS       XP_053910846             381 aa            linear   VRT 09-MAR-2023
DEFINITION  periphilin-1 isoform X5 [Cuculus canorus].
ACCESSION   XP_053910846
VERSION     XP_053910846.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054871.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..381
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..381
                     /product="periphilin-1 isoform X5"
                     /calculated_mol_wt=44148
     Region          299..367
                     /region_name="periphilin-like"
                     /note="Vertebrate periphilin-1 and similar proteins;
                     cd22896"
                     /db_xref="CDD:439377"
     Site            order(299,303..304,307,310..311,314..315,318..319,322,340,
                     343..344,347..348,351..352,354..355,358..359,362)
                     /site_type="other"
                     /note="heterotrimer interface [polypeptide binding]"
                     /db_xref="CDD:439377"
     CDS             1..381
                     /gene="PPHLN1"
                     /coded_by="XM_054054871.1:1745..2890"
                     /db_xref="GeneID:104062403"
ORIGIN      
        1 mayrrdemws eerydyervp rerlpprihp dddyhrvvnv vpkkppller pgdgnysryd
       61 dynhaeyrdy degrgfahdr rsgpphrgvr knesgyrwpr ddhpisrqpe yrdvrdgfrr
      121 ksfypshyvr drsphkrdsp ffrespgsrr dsphsrsgss vssrsysper skaypfhqsq
      181 hsrsmsslhk rnissqqgke rtsvqslkts rdaspsgsta ipsskaleks nrlsekelae
      241 aaskwaaeks ekadesnlpe iteydagssa plyveqteet etnvmdntel yedghllgrs
      301 kaiatkmkei eqvyrqdcet fgmvvkmlid kdpsleksiq falrqnlhei gercieelkh
      361 fiaqydaanq dlsesfkegs y
//
LOCUS       XP_053910850             378 aa            linear   VRT 09-MAR-2023
DEFINITION  periphilin-1 isoform X6 [Cuculus canorus].
ACCESSION   XP_053910850
VERSION     XP_053910850.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054875.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..378
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..378
                     /product="periphilin-1 isoform X6"
                     /calculated_mol_wt=43764
     Region          296..364
                     /region_name="periphilin-like"
                     /note="Vertebrate periphilin-1 and similar proteins;
                     cd22896"
                     /db_xref="CDD:439377"
     Site            order(296,300..301,304,307..308,311..312,315..316,319,337,
                     340..341,344..345,348..349,351..352,355..356,359)
                     /site_type="other"
                     /note="heterotrimer interface [polypeptide binding]"
                     /db_xref="CDD:439377"
     CDS             1..378
                     /gene="PPHLN1"
                     /coded_by="XM_054054875.1:1745..2881"
                     /db_xref="GeneID:104062403"
ORIGIN      
        1 mayrrdemws eerydyervp rerlpprihp dddyhrvvnv vpkkppller pgdgnysryd
       61 dynhaeyrdy degrgfahdr rsgpphrgne sgyrwprddh pisrqpeyrd vrdgfrrksf
      121 ypshyvrdrs phkrdspffr espgsrrdsp hsrsgssvss rsysperska ypfhqsqhsr
      181 smsslhkrni ssqqgkerts vqslktsrda spsgstaips skaleksnrl sekelaeaas
      241 kwaaekseka desnlpeite ydagssaply veqteetetn vmdntelyed ghllgrskai
      301 atkmkeieqv yrqdcetfgm vvkmlidkdp sleksiqfal rqnlheiger cieelkhfia
      361 qydaanqdls esfkegsy
//
LOCUS       XP_053910854             364 aa            linear   VRT 09-MAR-2023
DEFINITION  periphilin-1 isoform X7 [Cuculus canorus].
ACCESSION   XP_053910854
VERSION     XP_053910854.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054879.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..364
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..364
                     /product="periphilin-1 isoform X7"
                     /calculated_mol_wt=42209
     Region          282..350
                     /region_name="periphilin-like"
                     /note="Vertebrate periphilin-1 and similar proteins;
                     cd22896"
                     /db_xref="CDD:439377"
     Site            order(282,286..287,290,293..294,297..298,301..302,305,323,
                     326..327,330..331,334..335,337..338,341..342,345)
                     /site_type="other"
                     /note="heterotrimer interface [polypeptide binding]"
                     /db_xref="CDD:439377"
     CDS             1..364
                     /gene="PPHLN1"
                     /coded_by="XM_054054879.1:1745..2839"
                     /db_xref="GeneID:104062403"
ORIGIN      
        1 mayrrdemws eerydyervp rerlpprihp dddyhrvvnv vpkkppller pgdgnysryd
       61 dynhaeyrdy degrgfahdr rsgpphrgne sgyrwprddh pisrqpeyrd vrdgfrrksf
      121 ypshyvrdrs phkrdspffr espgsrrdsp hsrsgssvss rsysperska ypfhqsqhsr
      181 skertsvqsl ktsrdaspsg staipsskal eksnrlseke laeaaskwaa eksekadesn
      241 lpeiteydag ssaplyveqt eetetnvmdn telyedghll grskaiatkm keieqvyrqd
      301 cetfgmvvkm lidkdpslek siqfalrqnl heigerciee lkhfiaqyda anqdlsesfk
      361 egsy
//
LOCUS       XP_053910863             216 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger CCHC-type and RNA-binding motif-containing protein 1
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053910863
VERSION     XP_053910863.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054888.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..216
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..216
                     /product="zinc finger CCHC-type and RNA-binding
                     motif-containing protein 1 isoform X1"
                     /calculated_mol_wt=24406
     Region          9..84
                     /region_name="RRM_ZCRB1"
                     /note="RNA recognition motif (RRM) found in Zinc finger
                     CCHC-type and RNA-binding motif-containing protein 1
                     (ZCRB1) and similar proteins; cd12393"
                     /db_xref="CDD:409827"
     Region          <97..123
                     /region_name="PTZ00368"
                     /note="universal minicircle sequence binding protein
                     (UMSBP); Provisional"
                     /db_xref="CDD:173561"
     CDS             1..216
                     /gene="ZCRB1"
                     /coded_by="XM_054054888.1:129..779"
                     /db_xref="GeneID:104062402"
ORIGIN      
        1 msgglapsks tvyvsnlpfa ltnndlyrif skygkvvkvt imkdkdtrks kgvafilfld
       61 kesaqncsra lnnkqlfgrv ikasiaidng raaefirrrn yfdkskcyec geaghlsyac
      121 pknmlgerep pkkkekkkrk kivepeeiee edeseeeged paldslsqai afqqakieee
      181 qqrwtqtage ssisddskrp rikksayfsd eeelsd
//
LOCUS       XP_053910872             216 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger CCHC-type and RNA-binding motif-containing protein 1
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053910872
VERSION     XP_053910872.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054897.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..216
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..216
                     /product="zinc finger CCHC-type and RNA-binding
                     motif-containing protein 1 isoform X1"
                     /calculated_mol_wt=24406
     Region          9..84
                     /region_name="RRM_ZCRB1"
                     /note="RNA recognition motif (RRM) found in Zinc finger
                     CCHC-type and RNA-binding motif-containing protein 1
                     (ZCRB1) and similar proteins; cd12393"
                     /db_xref="CDD:409827"
     Region          <97..123
                     /region_name="PTZ00368"
                     /note="universal minicircle sequence binding protein
                     (UMSBP); Provisional"
                     /db_xref="CDD:173561"
     CDS             1..216
                     /gene="ZCRB1"
                     /coded_by="XM_054054897.1:63..713"
                     /db_xref="GeneID:104062402"
ORIGIN      
        1 msgglapsks tvyvsnlpfa ltnndlyrif skygkvvkvt imkdkdtrks kgvafilfld
       61 kesaqncsra lnnkqlfgrv ikasiaidng raaefirrrn yfdkskcyec geaghlsyac
      121 pknmlgerep pkkkekkkrk kivepeeiee edeseeeged paldslsqai afqqakieee
      181 qqrwtqtage ssisddskrp rikksayfsd eeelsd
//
LOCUS       XP_053910879             175 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger CCHC-type and RNA-binding motif-containing protein 1
            isoform X2 [Cuculus canorus].
ACCESSION   XP_053910879
VERSION     XP_053910879.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054904.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..175
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..175
                     /product="zinc finger CCHC-type and RNA-binding
                     motif-containing protein 1 isoform X2"
                     /calculated_mol_wt=19943
     Region          <1..43
                     /region_name="RRM_SF"
                     /note="RNA recognition motif (RRM) superfamily; cl17169"
                     /db_xref="CDD:473069"
     Region          <56..82
                     /region_name="PTZ00368"
                     /note="universal minicircle sequence binding protein
                     (UMSBP); Provisional"
                     /db_xref="CDD:173561"
     CDS             1..175
                     /gene="ZCRB1"
                     /coded_by="XM_054054904.1:217..744"
                     /db_xref="GeneID:104062402"
ORIGIN      
        1 mkdkdtrksk gvafilfldk esaqncsral nnkqlfgrvi kasiaidngr aaefirrrny
       61 fdkskcyecg eaghlsyacp knmlgerepp kkkekkkrkk ivepeeieee deseeegedp
      121 aldslsqaia fqqakieeeq qrwtqtages sisddskrpr ikksayfsde eelsd
//
LOCUS       XP_053910889             433 aa            linear   VRT 09-MAR-2023
DEFINITION  pannexin-1 [Cuculus canorus].
ACCESSION   XP_053910889
VERSION     XP_053910889.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054914.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..433
                     /product="pannexin-1"
                     /calculated_mol_wt=48908
     CDS             1..433
                     /gene="PANX1"
                     /coded_by="XM_054054914.1:62..1363"
                     /db_xref="GeneID:104064188"
ORIGIN      
        1 maiahiatey vfsdfllkep petrfkglrl elaldkivtc iavglpllli slafaqevsi
       61 gaqiscfapg sfswrqaayv daycwaavqq kqpsqnnlen iplwlhkffp yilllvaill
      121 ylpclfwrft aaphlssdlk fimeeldkay nraikaansv rsgdhrdptd lvpaanenlt
      181 qslweisesy fkypiveqyl ktkknsrcli vkyivcrllt lliifiacly lgyyislssl
      241 sdeflctikt gilkndtavp evvqckliav gvfkvlsyin livyllvmpl vvyamfvpwr
      301 wnsgilkvye ilptfdvlkl kskcfddlsl yllfleenvs elksfkclkv leniavsekf
      361 dvmqllvnlg tiktdtvdgk pgpavlekpe etpteelekn atelqvladh dasgnastre
      421 dkklrqrlid ssc
//
LOCUS       XP_053910903             729 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium-dependent neutral amino acid transporter B(0)AT2 [Cuculus
            canorus].
ACCESSION   XP_053910903
VERSION     XP_053910903.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054928.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..729
                     /product="sodium-dependent neutral amino acid transporter
                     B(0)AT2"
                     /calculated_mol_wt=81510
     Region          61..640
                     /region_name="SLC6sbd_SBAT1"
                     /note="Sodium-coupled branched-chain amino-acid
                     transporter 1; solute-binding domain; cd11522"
                     /db_xref="CDD:212091"
     Site            order(76,79,470,473..474)
                     /site_type="other"
                     /note="Na binding site 2 [ion binding]"
                     /db_xref="CDD:212091"
     Site            order(77..78,80..83,158,308..309,314,316,474,477..478)
                     /site_type="other"
                     /note="putative substrate binding site 1 [chemical
                     binding]"
                     /db_xref="CDD:212091"
     Site            order(78,83,309,341)
                     /site_type="other"
                     /note="Na binding site 1 [ion binding]"
                     /db_xref="CDD:212091"
     Site            order(85..86,157,161,164,439,443)
                     /site_type="other"
                     /note="putative substrate binding site 2 [chemical
                     binding]"
                     /db_xref="CDD:212091"
     CDS             1..729
                     /gene="SLC6A15"
                     /coded_by="XM_054054928.1:324..2513"
                     /db_xref="GeneID:104058240"
ORIGIN      
        1 mpknskvvkr elddeviesv kdllsnedss ddafkkselm vddqeekdvd veegsdvede
       61 rpawnsklqy ilaqvgfsvg lgnvwrfpyl cqkngggayl vpylilllii giplfflela
      121 vgqrirrgsi gvwnyispkl ggigfascvv cffgalyynv iigwslfyfs qsfqhplpwn
      181 qcplvknash tfvepeceks sattyywyre alnissslse sgglnwkmti cllaawvmvc
      241 lamikgiqss gkimyfsslf pyvvllcfli rvlllngsvd girhmftpkl eimlepkvwr
      301 eaatqvffal glgfggviaf ssynkrdnnc hfdavlvsfi nfftsvlatl vvfavlgfka
      361 niinekcviq nsekilkllk ignlsqdmip hhinfssvta edynllydii qkvkeeefds
      421 lglkscqied elnkavqgtg lafiafteam thfpaspfws vmfflmlvnl glgsmfgtie
      481 giiapivdtf kvrkeiltvi ccsvaffigl ifvqrsgnyf vtmfddysat lpllivvtle
      541 niavsrmygi dkfmedlkdm lgfspsqyyy ymwkyvsplv llcllgasvv qmalsppgyn
      601 awveekatee frsyptwgmv vcislivlam lpvpivfmvr rcnliddssg slasvsykrg
      661 riikepvnle gdntslihgk spsevpspsf gkniyrkqtg sptldtapng rygigylmad
      721 mpdmpesdl
//
LOCUS       XP_053910911             729 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium-dependent neutral amino acid transporter B(0)AT2 [Cuculus
            canorus].
ACCESSION   XP_053910911
VERSION     XP_053910911.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054936.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..729
                     /product="sodium-dependent neutral amino acid transporter
                     B(0)AT2"
                     /calculated_mol_wt=81510
     Region          61..640
                     /region_name="SLC6sbd_SBAT1"
                     /note="Sodium-coupled branched-chain amino-acid
                     transporter 1; solute-binding domain; cd11522"
                     /db_xref="CDD:212091"
     Site            order(76,79,470,473..474)
                     /site_type="other"
                     /note="Na binding site 2 [ion binding]"
                     /db_xref="CDD:212091"
     Site            order(77..78,80..83,158,308..309,314,316,474,477..478)
                     /site_type="other"
                     /note="putative substrate binding site 1 [chemical
                     binding]"
                     /db_xref="CDD:212091"
     Site            order(78,83,309,341)
                     /site_type="other"
                     /note="Na binding site 1 [ion binding]"
                     /db_xref="CDD:212091"
     Site            order(85..86,157,161,164,439,443)
                     /site_type="other"
                     /note="putative substrate binding site 2 [chemical
                     binding]"
                     /db_xref="CDD:212091"
     CDS             1..729
                     /gene="SLC6A15"
                     /coded_by="XM_054054936.1:329..2518"
                     /db_xref="GeneID:104058240"
ORIGIN      
        1 mpknskvvkr elddeviesv kdllsnedss ddafkkselm vddqeekdvd veegsdvede
       61 rpawnsklqy ilaqvgfsvg lgnvwrfpyl cqkngggayl vpylilllii giplfflela
      121 vgqrirrgsi gvwnyispkl ggigfascvv cffgalyynv iigwslfyfs qsfqhplpwn
      181 qcplvknash tfvepeceks sattyywyre alnissslse sgglnwkmti cllaawvmvc
      241 lamikgiqss gkimyfsslf pyvvllcfli rvlllngsvd girhmftpkl eimlepkvwr
      301 eaatqvffal glgfggviaf ssynkrdnnc hfdavlvsfi nfftsvlatl vvfavlgfka
      361 niinekcviq nsekilkllk ignlsqdmip hhinfssvta edynllydii qkvkeeefds
      421 lglkscqied elnkavqgtg lafiafteam thfpaspfws vmfflmlvnl glgsmfgtie
      481 giiapivdtf kvrkeiltvi ccsvaffigl ifvqrsgnyf vtmfddysat lpllivvtle
      541 niavsrmygi dkfmedlkdm lgfspsqyyy ymwkyvsplv llcllgasvv qmalsppgyn
      601 awveekatee frsyptwgmv vcislivlam lpvpivfmvr rcnliddssg slasvsykrg
      661 riikepvnle gdntslihgk spsevpspsf gkniyrkqtg sptldtapng rygigylmad
      721 mpdmpesdl
//
LOCUS       XP_053910920             729 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium-dependent neutral amino acid transporter B(0)AT2 [Cuculus
            canorus].
ACCESSION   XP_053910920
VERSION     XP_053910920.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054945.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..729
                     /product="sodium-dependent neutral amino acid transporter
                     B(0)AT2"
                     /calculated_mol_wt=81510
     Region          61..640
                     /region_name="SLC6sbd_SBAT1"
                     /note="Sodium-coupled branched-chain amino-acid
                     transporter 1; solute-binding domain; cd11522"
                     /db_xref="CDD:212091"
     Site            order(76,79,470,473..474)
                     /site_type="other"
                     /note="Na binding site 2 [ion binding]"
                     /db_xref="CDD:212091"
     Site            order(77..78,80..83,158,308..309,314,316,474,477..478)
                     /site_type="other"
                     /note="putative substrate binding site 1 [chemical
                     binding]"
                     /db_xref="CDD:212091"
     Site            order(78,83,309,341)
                     /site_type="other"
                     /note="Na binding site 1 [ion binding]"
                     /db_xref="CDD:212091"
     Site            order(85..86,157,161,164,439,443)
                     /site_type="other"
                     /note="putative substrate binding site 2 [chemical
                     binding]"
                     /db_xref="CDD:212091"
     CDS             1..729
                     /gene="SLC6A15"
                     /coded_by="XM_054054945.1:220..2409"
                     /db_xref="GeneID:104058240"
ORIGIN      
        1 mpknskvvkr elddeviesv kdllsnedss ddafkkselm vddqeekdvd veegsdvede
       61 rpawnsklqy ilaqvgfsvg lgnvwrfpyl cqkngggayl vpylilllii giplfflela
      121 vgqrirrgsi gvwnyispkl ggigfascvv cffgalyynv iigwslfyfs qsfqhplpwn
      181 qcplvknash tfvepeceks sattyywyre alnissslse sgglnwkmti cllaawvmvc
      241 lamikgiqss gkimyfsslf pyvvllcfli rvlllngsvd girhmftpkl eimlepkvwr
      301 eaatqvffal glgfggviaf ssynkrdnnc hfdavlvsfi nfftsvlatl vvfavlgfka
      361 niinekcviq nsekilkllk ignlsqdmip hhinfssvta edynllydii qkvkeeefds
      421 lglkscqied elnkavqgtg lafiafteam thfpaspfws vmfflmlvnl glgsmfgtie
      481 giiapivdtf kvrkeiltvi ccsvaffigl ifvqrsgnyf vtmfddysat lpllivvtle
      541 niavsrmygi dkfmedlkdm lgfspsqyyy ymwkyvsplv llcllgasvv qmalsppgyn
      601 awveekatee frsyptwgmv vcislivlam lpvpivfmvr rcnliddssg slasvsykrg
      661 riikepvnle gdntslihgk spsevpspsf gkniyrkqtg sptldtapng rygigylmad
      721 mpdmpesdl
//
LOCUS       XP_053910928             826 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich repeat and guanylate kinase domain-containing protein
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053910928
VERSION     XP_053910928.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054953.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..826
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..826
                     /product="leucine-rich repeat and guanylate kinase
                     domain-containing protein isoform X1"
                     /calculated_mol_wt=92113
     Region          101..120
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <103..>287
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          121..142
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          143..164
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          165..186
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          187..208
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          228..251
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <233..357
                     /region_name="LRR_9"
                     /note="Leucine-rich repeat; pfam14580"
                     /db_xref="CDD:405295"
     Region          252..273
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          386..507
                     /region_name="GMPK"
                     /note="Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
                     also known as guanylate kinase (GKase), catalyzes the
                     reversible phosphoryl transfer from adenosine triphosphate
                     (ATP) to guanosine monophosphate (GMP) to yield adenosine
                     diphosphate (ADP) and guanosine...; cd00071"
                     /db_xref="CDD:238026"
     Site            order(391,397,414,421,424,433,456,461)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:238026"
     Site            order(391,397)
                     /site_type="other"
                     /note="G-X2-G-X-G-K"
                     /db_xref="CDD:238026"
     CDS             1..826
                     /gene="LRGUK"
                     /coded_by="XM_054054953.1:73..2553"
                     /db_xref="GeneID:104061456"
ORIGIN      
        1 maggeesrge rglseplpsa yglaeplsqg fpgeqqqdga slaqpqlspa qreeeeekkg
       61 eeeesqhaeg qfdgvldedt vaeglhklgr sapgteyvyl nlsltgrels dinilsryvh
      121 lqklelsynk indlscighi phllelnash nelttsfmfk ppknlrevdf synqiakmqd
      181 lsayqsltkl lldfnnieei rglekcrsln hlslshnrli aisglenlpi kvldlssnqi
      241 ekitgldslk tlqkldlssn kitsleglee hdlletinle gnqiaelhef ewieglpllr
      301 vlnllknplq eqtdywllai fkmlqlteld lkkisveekv aavnkydppp evvaakdhmi
      361 hvknsmrqpq rifdstlpsl dapypmlvlt gplacgkrel thkicrqfkn ffrygpchtt
      421 raayfgeenr ldyyfvsqea fdemvntgkf matykysgyy yglgrdtves iareglatcv
      481 hleiegvhsl kntyfkpryi llvpmnkeky eghlrrkglf srpeieeavs rvdmyikisq
      541 dfpgyfdavv ntdeldeaft elsllvkayl glklpavvds iqdvnsraga gsripllqeq
      601 rlspgggvtg ttrsssvnef ldssaknypg gildslavqp gsveeasfqr rysairrall
      661 ekapsayvql fqrdlavtpa lsssrqqlle pttcsllsdg knitqdfhlr npesrkskpr
      721 knirgcrdps pagglflmpa gapaaegqlv rtpvlqetka ehqdprgaen gagrmketel
      781 padnlqrkhs ksktgsshvp qlvswpgsns kttlppipsg rkrnnp
//
LOCUS       XP_053910934             823 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich repeat and guanylate kinase domain-containing protein
            isoform X2 [Cuculus canorus].
ACCESSION   XP_053910934
VERSION     XP_053910934.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054959.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..823
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..823
                     /product="leucine-rich repeat and guanylate kinase
                     domain-containing protein isoform X2"
                     /calculated_mol_wt=91671
     Region          108..127
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <110..>294
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          128..149
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          150..171
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          172..193
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          194..215
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          235..258
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <240..364
                     /region_name="LRR_9"
                     /note="Leucine-rich repeat; pfam14580"
                     /db_xref="CDD:405295"
     Region          259..280
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          393..514
                     /region_name="GMPK"
                     /note="Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
                     also known as guanylate kinase (GKase), catalyzes the
                     reversible phosphoryl transfer from adenosine triphosphate
                     (ATP) to guanosine monophosphate (GMP) to yield adenosine
                     diphosphate (ADP) and guanosine...; cd00071"
                     /db_xref="CDD:238026"
     Site            order(398,404,421,428,431,440,463,468)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:238026"
     Site            order(398,404)
                     /site_type="other"
                     /note="G-X2-G-X-G-K"
                     /db_xref="CDD:238026"
     CDS             1..823
                     /gene="LRGUK"
                     /coded_by="XM_054054959.1:73..2544"
                     /db_xref="GeneID:104061456"
ORIGIN      
        1 maggeesrge rglseplpsa yglaeplsqg fpgeqqqdga slaqpqlspa qreeeeekkg
       61 eeeesqhaev qlsapqgqfd gvldedtvae glhklgrsap gteyvylnls ltgrelsdin
      121 ilsryvhlqk lelsynkind lscighiphl lelnashnel ttsfmfkppk nlrevdfsyn
      181 qiakmqdlsa yqsltkllld fnnieeirgl ekcrslnhls lshnrliais glenlpikvl
      241 dlssnqieki tgldslktlq kldlssnkit slegleehdl letinlegnq iaelhefewi
      301 eglpllrvln llknplqeqt dywllaifkm lqlteldlkk isveekvaav nkydpppevv
      361 aakdhmihvk nsmrqpqrif dstlpsldap ypmlvltgpl acgkrelthk icrqfknffr
      421 ygpchttraa yfgeenrldy yfvsqeafde mvntgkfmat ykysgyyygl grdtvesiar
      481 eglatcvhle iegvhslknt yfkpryillv pmnkekyegh lrrkglfsrp eieeavsrvd
      541 myikisqdfp gyfdavvntd eldeaftels llvkaylglk lpavvdsiqd vnsragagsr
      601 ipllqeqrls pgggvtgttr sssvneflds saknypggil dslavqpgsv eeasfqrrys
      661 airralleka psayvqlfqr dlavtpalss srqqlleptt csllsdgkni tqdfhlrnpe
      721 srcrdpspag glflmpagap aaegqlvrtp vlqetkaehq dprgaengag rmketelpad
      781 nlqrkhsksk tgsshvpqlv swpgsnsktt lppipsgrkr nnp
//
LOCUS       XP_053910942             687 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich repeat and guanylate kinase domain-containing protein
            isoform X3 [Cuculus canorus].
ACCESSION   XP_053910942
VERSION     XP_053910942.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054967.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..687
                     /product="leucine-rich repeat and guanylate kinase
                     domain-containing protein isoform X3"
                     /calculated_mol_wt=76877
     Region          108..127
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <110..>294
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          128..149
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          150..171
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          172..193
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          194..215
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          235..258
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <240..364
                     /region_name="LRR_9"
                     /note="Leucine-rich repeat; pfam14580"
                     /db_xref="CDD:405295"
     Region          259..280
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          393..514
                     /region_name="GMPK"
                     /note="Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
                     also known as guanylate kinase (GKase), catalyzes the
                     reversible phosphoryl transfer from adenosine triphosphate
                     (ATP) to guanosine monophosphate (GMP) to yield adenosine
                     diphosphate (ADP) and guanosine...; cd00071"
                     /db_xref="CDD:238026"
     Site            order(398,404,421,428,431,440,463,468)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:238026"
     Site            order(398,404)
                     /site_type="other"
                     /note="G-X2-G-X-G-K"
                     /db_xref="CDD:238026"
     CDS             1..687
                     /gene="LRGUK"
                     /coded_by="XM_054054967.1:73..2136"
                     /db_xref="GeneID:104061456"
ORIGIN      
        1 maggeesrge rglseplpsa yglaeplsqg fpgeqqqdga slaqpqlspa qreeeeekkg
       61 eeeesqhaev qlsapqgqfd gvldedtvae glhklgrsap gteyvylnls ltgrelsdin
      121 ilsryvhlqk lelsynkind lscighiphl lelnashnel ttsfmfkppk nlrevdfsyn
      181 qiakmqdlsa yqsltkllld fnnieeirgl ekcrslnhls lshnrliais glenlpikvl
      241 dlssnqieki tgldslktlq kldlssnkit slegleehdl letinlegnq iaelhefewi
      301 eglpllrvln llknplqeqt dywllaifkm lqlteldlkk isveekvaav nkydpppevv
      361 aakdhmihvk nsmrqpqrif dstlpsldap ypmlvltgpl acgkrelthk icrqfknffr
      421 ygpchttraa yfgeenrldy yfvsqeafde mvntgkfmat ykysgyyygl grdtvesiar
      481 eglatcvhle iegvhslknt yfkpryillv pmnkekyegh lrrkglfsrp eieeavsrvd
      541 myikisqdfp gyfdavvntd eldeaftels llvkaylglk lpavvdsiqd vnsragagsr
      601 ipllqeqrls pgggvtgttr sssvneflds saknypggil dslavqpgsv glgshscteq
      661 fpstitgtdn mfsalrwkey hprlpsa
//
LOCUS       XP_053910949             687 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich repeat and guanylate kinase domain-containing protein
            isoform X3 [Cuculus canorus].
ACCESSION   XP_053910949
VERSION     XP_053910949.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054054974.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..687
                     /product="leucine-rich repeat and guanylate kinase
                     domain-containing protein isoform X3"
                     /calculated_mol_wt=76877
     Region          108..127
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <110..>294
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          128..149
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          150..171
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          172..193
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          194..215
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          235..258
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <240..364
                     /region_name="LRR_9"
                     /note="Leucine-rich repeat; pfam14580"
                     /db_xref="CDD:405295"
     Region          259..280
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          393..514
                     /region_name="GMPK"
                     /note="Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
                     also known as guanylate kinase (GKase), catalyzes the
                     reversible phosphoryl transfer from adenosine triphosphate
                     (ATP) to guanosine monophosphate (GMP) to yield adenosine
                     diphosphate (ADP) and guanosine...; cd00071"
                     /db_xref="CDD:238026"
     Site            order(398,404,421,428,431,440,463,468)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:238026"
     Site            order(398,404)
                     /site_type="other"
                     /note="G-X2-G-X-G-K"
                     /db_xref="CDD:238026"
     CDS             1..687
                     /gene="LRGUK"
                     /coded_by="XM_054054974.1:73..2136"
                     /db_xref="GeneID:104061456"
ORIGIN      
        1 maggeesrge rglseplpsa yglaeplsqg fpgeqqqdga slaqpqlspa qreeeeekkg
       61 eeeesqhaev qlsapqgqfd gvldedtvae glhklgrsap gteyvylnls ltgrelsdin
      121 ilsryvhlqk lelsynkind lscighiphl lelnashnel ttsfmfkppk nlrevdfsyn
      181 qiakmqdlsa yqsltkllld fnnieeirgl ekcrslnhls lshnrliais glenlpikvl
      241 dlssnqieki tgldslktlq kldlssnkit slegleehdl letinlegnq iaelhefewi
      301 eglpllrvln llknplqeqt dywllaifkm lqlteldlkk isveekvaav nkydpppevv
      361 aakdhmihvk nsmrqpqrif dstlpsldap ypmlvltgpl acgkrelthk icrqfknffr
      421 ygpchttraa yfgeenrldy yfvsqeafde mvntgkfmat ykysgyyygl grdtvesiar
      481 eglatcvhle iegvhslknt yfkpryillv pmnkekyegh lrrkglfsrp eieeavsrvd
      541 myikisqdfp gyfdavvntd eldeaftels llvkaylglk lpavvdsiqd vnsragagsr
      601 ipllqeqrls pgggvtgttr sssvneflds saknypggil dslavqpgsv glgshscteq
      661 fpstitgtdn mfsalrwkey hprlpsa
//
LOCUS       XP_009566413             704 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier organic anion transporter family member 1C1 [Cuculus
            canorus].
ACCESSION   XP_009566413
VERSION     XP_009566413.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568118.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566413.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..704
                     /product="solute carrier organic anion transporter family
                     member 1C1"
                     /calculated_mol_wt=76749
     Region          35..571
                     /region_name="MFS"
                     /note="Major Facilitator Superfamily; cl28910"
                     /db_xref="CDD:475125"
     Site            order(50..51,54..55,58,90,197..198,200..202,205,225,
                     228..229,232,355,358..359,362..364,367,396,400,441..442,
                     446,450,511,514..515,518..519,522)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:349949"
     CDS             1..704
                     /gene="LOC104065617"
                     /coded_by="XM_009568118.2:186..2300"
                     /db_xref="GeneID:104065617"
ORIGIN      
        1 mdrpitasql kdkslfmdss gstvpsksmc hncsklkifl galafsffak gfsgsymksm
       61 ssqierrfei sssivgiidg sfeignlmvm vlvsylgprv hrpkviavgc iimslgafls
      121 vmpqflmery nyeritvtvd nsstsvsacs palsvghpvt datetpsamk nfgcekttns
      181 ylwlfvlvgn llrgigeapv mplgvsyidd fskeensafy iglvrssgmf gptlgfllgs
      241 fcasvwvdig vvdidaisin pkdtrwvgaw wlgllicgav nfiaslpfwf lpyslpkeee
      301 nenpkishlp vqgdhykrdp pvqpqlkfse avkdfipalk klfgnpvflv yifltilqyn
      361 slvgiityet kfmeqqfnvs varaifligv illpvtilgm flggflikkf klhitemtkf
      421 acitfiiayl lnllyftcsc evlqvaglta pysglkhlss sqnsfmagcn adcsckldqw
      481 dpvcgdngit ymtacfagck ssigtgknmv fnncscvegq grglgnssai lgqcqrgsct
      541 kafpyflalq tacafilalg gtptymimfr svspelksfa vgietlggri lgglpapiyf
      601 galidetclk wgtkscggsg scrvydtnaf rnvylgliag lragccllyi vlsvlimkrf
      661 kpggkemtdi kntersmnke patankkeil pgartseese etwm
//
LOCUS       XP_009567279             893 aa            linear   VRT 09-MAR-2023
DEFINITION  scm-like with four MBT domains protein 2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009567279
VERSION     XP_009567279.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568984.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567279.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..893
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..893
                     /product="scm-like with four MBT domains protein 2 isoform
                     X1"
                     /calculated_mol_wt=101125
     Region          73..166
                     /region_name="MBT_SFMBT2_rpt1"
                     /note="first malignant brain tumor (MBT) repeat found in
                     Scm-like with four MBT domains protein 2 (SFMBT2);
                     cd20112"
                     /db_xref="CDD:439102"
     Site            order(86,89,92,94,110,113,119)
                     /site_type="other"
                     /note="putative methyllysine peptide binding site
                     [polypeptide binding]"
                     /db_xref="CDD:439102"
     Region          185..283
                     /region_name="MBT_SFMBT2_rpt2"
                     /note="second malignant brain tumor (MBT) repeat found in
                     Scm-like with four MBT domains protein 2 (SFMBT2);
                     cd20114"
                     /db_xref="CDD:439104"
     Site            order(198,201,204,206,222,225,231)
                     /site_type="other"
                     /note="putative methyllysine peptide binding site
                     [polypeptide binding]"
                     /db_xref="CDD:439104"
     Region          300..392
                     /region_name="MBT_SFMBT2_rpt3"
                     /note="three malignant brain tumor (MBT) repeat found in
                     Scm-like with four MBT domains protein 2 (SFMBT2);
                     cd20116"
                     /db_xref="CDD:439106"
     Region          409..499
                     /region_name="MBT_SFMBT2_rpt4"
                     /note="fourth malignant brain tumor (MBT) repeat found in
                     Scm-like with four MBT domains protein 2 (SFMBT2);
                     cd20118"
                     /db_xref="CDD:439108"
     Region          530..645
                     /region_name="SLED"
                     /note="SLED domain; pfam12140"
                     /db_xref="CDD:463469"
     Region          814..893
                     /region_name="SAM_Scm-like-4MBT1,2"
                     /note="SAM domain of Scm-like-4MBT1,2 proteins of Polycomb
                     group; cd09581"
                     /db_xref="CDD:188980"
     Site            order(848..850,852..853,856..857,860..861,866)
                     /site_type="other"
                     /note="putative oligomer interface ML [polypeptide
                     binding]"
                     /db_xref="CDD:188980"
     Site            order(869..872,874..875,878,881)
                     /site_type="other"
                     /note="putative oligomer interface EH [polypeptide
                     binding]"
                     /db_xref="CDD:188980"
     CDS             1..893
                     /gene="SFMBT2"
                     /coded_by="XM_009568984.2:166..2847"
                     /db_xref="GeneID:104066387"
ORIGIN      
        1 metrssfiat mqetqhlspe kgqspangnr eqfdsdegss iedadfnwde yleetgasaa
       61 phtsfkhvei slqssfqpgm klevanksnp dtywvatiit tcgqllllry cgygddrrad
      121 fwcdvmtadl hpvgwctqnn kvlmppdaik ekytdwtefl ihdltgarta panllegplr
      181 gknpvdlitv dslielqdsq npfqywivsv venvggrlrl ryvgleetes ydqwlfyldc
      241 rlrpvgwcqe nkyrmdppad iyslktisew ksalekslnd aanfplpmev fkdhadlrnh
      301 fftvgmklea vntrepfhic pasvtkvfnn hylqvtiddl rhepskisml chadslgilp
      361 iqwclkngvn ltppkgysgq dfdwadyqkq cgaeaaphvc frntsfsrgf tknmkleavn
      421 pknpaeicva sitsvkgrlm wihlegsqmp speyivdves tdifpvgwce angynltpph
      481 kavlrrkrri avvqpekqlp savpvekiph dlcsvpqpdt tgtingrycc pqlyinhrcf
      541 sgpylnkgri aelpqsvgpg kcvlvlkevl smvinaaykp gsvlrelqlv edpqwnfqee
      601 tlkakyrgkt yratvkivrt sdqvadfcrr vcakleccpn lfspvlvaev cpencsihtk
      661 tkytyyygkr kkiikppige nnniksghvk parrrkrrks ifvqkkrrss avdlnaagsa
      721 eeseddepda medetgseet sselrddqtd tssaevpstr prravtlrss teldrpppte
      781 rarrsrrpqp hsynevekct qvkeeikqee eeklildsnp lewtvtdvvr fikltdcapl
      841 akifqeqdid gqalllltlp tvqecmelkl gpaiklchqi ervkvafyaq yan
//
LOCUS       XP_053911018             893 aa            linear   VRT 09-MAR-2023
DEFINITION  scm-like with four MBT domains protein 2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053911018
VERSION     XP_053911018.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055043.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..893
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..893
                     /product="scm-like with four MBT domains protein 2 isoform
                     X1"
                     /calculated_mol_wt=101125
     Region          73..166
                     /region_name="MBT_SFMBT2_rpt1"
                     /note="first malignant brain tumor (MBT) repeat found in
                     Scm-like with four MBT domains protein 2 (SFMBT2);
                     cd20112"
                     /db_xref="CDD:439102"
     Site            order(86,89,92,94,110,113,119)
                     /site_type="other"
                     /note="putative methyllysine peptide binding site
                     [polypeptide binding]"
                     /db_xref="CDD:439102"
     Region          185..283
                     /region_name="MBT_SFMBT2_rpt2"
                     /note="second malignant brain tumor (MBT) repeat found in
                     Scm-like with four MBT domains protein 2 (SFMBT2);
                     cd20114"
                     /db_xref="CDD:439104"
     Site            order(198,201,204,206,222,225,231)
                     /site_type="other"
                     /note="putative methyllysine peptide binding site
                     [polypeptide binding]"
                     /db_xref="CDD:439104"
     Region          300..392
                     /region_name="MBT_SFMBT2_rpt3"
                     /note="three malignant brain tumor (MBT) repeat found in
                     Scm-like with four MBT domains protein 2 (SFMBT2);
                     cd20116"
                     /db_xref="CDD:439106"
     Region          409..499
                     /region_name="MBT_SFMBT2_rpt4"
                     /note="fourth malignant brain tumor (MBT) repeat found in
                     Scm-like with four MBT domains protein 2 (SFMBT2);
                     cd20118"
                     /db_xref="CDD:439108"
     Region          530..645
                     /region_name="SLED"
                     /note="SLED domain; pfam12140"
                     /db_xref="CDD:463469"
     Region          814..893
                     /region_name="SAM_Scm-like-4MBT1,2"
                     /note="SAM domain of Scm-like-4MBT1,2 proteins of Polycomb
                     group; cd09581"
                     /db_xref="CDD:188980"
     Site            order(848..850,852..853,856..857,860..861,866)
                     /site_type="other"
                     /note="putative oligomer interface ML [polypeptide
                     binding]"
                     /db_xref="CDD:188980"
     Site            order(869..872,874..875,878,881)
                     /site_type="other"
                     /note="putative oligomer interface EH [polypeptide
                     binding]"
                     /db_xref="CDD:188980"
     CDS             1..893
                     /gene="SFMBT2"
                     /coded_by="XM_054055043.1:146..2827"
                     /db_xref="GeneID:104066387"
ORIGIN      
        1 metrssfiat mqetqhlspe kgqspangnr eqfdsdegss iedadfnwde yleetgasaa
       61 phtsfkhvei slqssfqpgm klevanksnp dtywvatiit tcgqllllry cgygddrrad
      121 fwcdvmtadl hpvgwctqnn kvlmppdaik ekytdwtefl ihdltgarta panllegplr
      181 gknpvdlitv dslielqdsq npfqywivsv venvggrlrl ryvgleetes ydqwlfyldc
      241 rlrpvgwcqe nkyrmdppad iyslktisew ksalekslnd aanfplpmev fkdhadlrnh
      301 fftvgmklea vntrepfhic pasvtkvfnn hylqvtiddl rhepskisml chadslgilp
      361 iqwclkngvn ltppkgysgq dfdwadyqkq cgaeaaphvc frntsfsrgf tknmkleavn
      421 pknpaeicva sitsvkgrlm wihlegsqmp speyivdves tdifpvgwce angynltpph
      481 kavlrrkrri avvqpekqlp savpvekiph dlcsvpqpdt tgtingrycc pqlyinhrcf
      541 sgpylnkgri aelpqsvgpg kcvlvlkevl smvinaaykp gsvlrelqlv edpqwnfqee
      601 tlkakyrgkt yratvkivrt sdqvadfcrr vcakleccpn lfspvlvaev cpencsihtk
      661 tkytyyygkr kkiikppige nnniksghvk parrrkrrks ifvqkkrrss avdlnaagsa
      721 eeseddepda medetgseet sselrddqtd tssaevpstr prravtlrss teldrpppte
      781 rarrsrrpqp hsynevekct qvkeeikqee eeklildsnp lewtvtdvvr fikltdcapl
      841 akifqeqdid gqalllltlp tvqecmelkl gpaiklchqi ervkvafyaq yan
//
LOCUS       XP_053911026             893 aa            linear   VRT 09-MAR-2023
DEFINITION  scm-like with four MBT domains protein 2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053911026
VERSION     XP_053911026.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055051.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..893
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..893
                     /product="scm-like with four MBT domains protein 2 isoform
                     X1"
                     /calculated_mol_wt=101125
     Region          73..166
                     /region_name="MBT_SFMBT2_rpt1"
                     /note="first malignant brain tumor (MBT) repeat found in
                     Scm-like with four MBT domains protein 2 (SFMBT2);
                     cd20112"
                     /db_xref="CDD:439102"
     Site            order(86,89,92,94,110,113,119)
                     /site_type="other"
                     /note="putative methyllysine peptide binding site
                     [polypeptide binding]"
                     /db_xref="CDD:439102"
     Region          185..283
                     /region_name="MBT_SFMBT2_rpt2"
                     /note="second malignant brain tumor (MBT) repeat found in
                     Scm-like with four MBT domains protein 2 (SFMBT2);
                     cd20114"
                     /db_xref="CDD:439104"
     Site            order(198,201,204,206,222,225,231)
                     /site_type="other"
                     /note="putative methyllysine peptide binding site
                     [polypeptide binding]"
                     /db_xref="CDD:439104"
     Region          300..392
                     /region_name="MBT_SFMBT2_rpt3"
                     /note="three malignant brain tumor (MBT) repeat found in
                     Scm-like with four MBT domains protein 2 (SFMBT2);
                     cd20116"
                     /db_xref="CDD:439106"
     Region          409..499
                     /region_name="MBT_SFMBT2_rpt4"
                     /note="fourth malignant brain tumor (MBT) repeat found in
                     Scm-like with four MBT domains protein 2 (SFMBT2);
                     cd20118"
                     /db_xref="CDD:439108"
     Region          530..645
                     /region_name="SLED"
                     /note="SLED domain; pfam12140"
                     /db_xref="CDD:463469"
     Region          814..893
                     /region_name="SAM_Scm-like-4MBT1,2"
                     /note="SAM domain of Scm-like-4MBT1,2 proteins of Polycomb
                     group; cd09581"
                     /db_xref="CDD:188980"
     Site            order(848..850,852..853,856..857,860..861,866)
                     /site_type="other"
                     /note="putative oligomer interface ML [polypeptide
                     binding]"
                     /db_xref="CDD:188980"
     Site            order(869..872,874..875,878,881)
                     /site_type="other"
                     /note="putative oligomer interface EH [polypeptide
                     binding]"
                     /db_xref="CDD:188980"
     CDS             1..893
                     /gene="SFMBT2"
                     /coded_by="XM_054055051.1:140..2821"
                     /db_xref="GeneID:104066387"
ORIGIN      
        1 metrssfiat mqetqhlspe kgqspangnr eqfdsdegss iedadfnwde yleetgasaa
       61 phtsfkhvei slqssfqpgm klevanksnp dtywvatiit tcgqllllry cgygddrrad
      121 fwcdvmtadl hpvgwctqnn kvlmppdaik ekytdwtefl ihdltgarta panllegplr
      181 gknpvdlitv dslielqdsq npfqywivsv venvggrlrl ryvgleetes ydqwlfyldc
      241 rlrpvgwcqe nkyrmdppad iyslktisew ksalekslnd aanfplpmev fkdhadlrnh
      301 fftvgmklea vntrepfhic pasvtkvfnn hylqvtiddl rhepskisml chadslgilp
      361 iqwclkngvn ltppkgysgq dfdwadyqkq cgaeaaphvc frntsfsrgf tknmkleavn
      421 pknpaeicva sitsvkgrlm wihlegsqmp speyivdves tdifpvgwce angynltpph
      481 kavlrrkrri avvqpekqlp savpvekiph dlcsvpqpdt tgtingrycc pqlyinhrcf
      541 sgpylnkgri aelpqsvgpg kcvlvlkevl smvinaaykp gsvlrelqlv edpqwnfqee
      601 tlkakyrgkt yratvkivrt sdqvadfcrr vcakleccpn lfspvlvaev cpencsihtk
      661 tkytyyygkr kkiikppige nnniksghvk parrrkrrks ifvqkkrrss avdlnaagsa
      721 eeseddepda medetgseet sselrddqtd tssaevpstr prravtlrss teldrpppte
      781 rarrsrrpqp hsynevekct qvkeeikqee eeklildsnp lewtvtdvvr fikltdcapl
      841 akifqeqdid gqalllltlp tvqecmelkl gpaiklchqi ervkvafyaq yan
//
LOCUS       XP_053911035             893 aa            linear   VRT 09-MAR-2023
DEFINITION  scm-like with four MBT domains protein 2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053911035
VERSION     XP_053911035.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055060.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..893
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..893
                     /product="scm-like with four MBT domains protein 2 isoform
                     X1"
                     /calculated_mol_wt=101125
     Region          73..166
                     /region_name="MBT_SFMBT2_rpt1"
                     /note="first malignant brain tumor (MBT) repeat found in
                     Scm-like with four MBT domains protein 2 (SFMBT2);
                     cd20112"
                     /db_xref="CDD:439102"
     Site            order(86,89,92,94,110,113,119)
                     /site_type="other"
                     /note="putative methyllysine peptide binding site
                     [polypeptide binding]"
                     /db_xref="CDD:439102"
     Region          185..283
                     /region_name="MBT_SFMBT2_rpt2"
                     /note="second malignant brain tumor (MBT) repeat found in
                     Scm-like with four MBT domains protein 2 (SFMBT2);
                     cd20114"
                     /db_xref="CDD:439104"
     Site            order(198,201,204,206,222,225,231)
                     /site_type="other"
                     /note="putative methyllysine peptide binding site
                     [polypeptide binding]"
                     /db_xref="CDD:439104"
     Region          300..392
                     /region_name="MBT_SFMBT2_rpt3"
                     /note="three malignant brain tumor (MBT) repeat found in
                     Scm-like with four MBT domains protein 2 (SFMBT2);
                     cd20116"
                     /db_xref="CDD:439106"
     Region          409..499
                     /region_name="MBT_SFMBT2_rpt4"
                     /note="fourth malignant brain tumor (MBT) repeat found in
                     Scm-like with four MBT domains protein 2 (SFMBT2);
                     cd20118"
                     /db_xref="CDD:439108"
     Region          530..645
                     /region_name="SLED"
                     /note="SLED domain; pfam12140"
                     /db_xref="CDD:463469"
     Region          814..893
                     /region_name="SAM_Scm-like-4MBT1,2"
                     /note="SAM domain of Scm-like-4MBT1,2 proteins of Polycomb
                     group; cd09581"
                     /db_xref="CDD:188980"
     Site            order(848..850,852..853,856..857,860..861,866)
                     /site_type="other"
                     /note="putative oligomer interface ML [polypeptide
                     binding]"
                     /db_xref="CDD:188980"
     Site            order(869..872,874..875,878,881)
                     /site_type="other"
                     /note="putative oligomer interface EH [polypeptide
                     binding]"
                     /db_xref="CDD:188980"
     CDS             1..893
                     /gene="SFMBT2"
                     /coded_by="XM_054055060.1:130..2811"
                     /db_xref="GeneID:104066387"
ORIGIN      
        1 metrssfiat mqetqhlspe kgqspangnr eqfdsdegss iedadfnwde yleetgasaa
       61 phtsfkhvei slqssfqpgm klevanksnp dtywvatiit tcgqllllry cgygddrrad
      121 fwcdvmtadl hpvgwctqnn kvlmppdaik ekytdwtefl ihdltgarta panllegplr
      181 gknpvdlitv dslielqdsq npfqywivsv venvggrlrl ryvgleetes ydqwlfyldc
      241 rlrpvgwcqe nkyrmdppad iyslktisew ksalekslnd aanfplpmev fkdhadlrnh
      301 fftvgmklea vntrepfhic pasvtkvfnn hylqvtiddl rhepskisml chadslgilp
      361 iqwclkngvn ltppkgysgq dfdwadyqkq cgaeaaphvc frntsfsrgf tknmkleavn
      421 pknpaeicva sitsvkgrlm wihlegsqmp speyivdves tdifpvgwce angynltpph
      481 kavlrrkrri avvqpekqlp savpvekiph dlcsvpqpdt tgtingrycc pqlyinhrcf
      541 sgpylnkgri aelpqsvgpg kcvlvlkevl smvinaaykp gsvlrelqlv edpqwnfqee
      601 tlkakyrgkt yratvkivrt sdqvadfcrr vcakleccpn lfspvlvaev cpencsihtk
      661 tkytyyygkr kkiikppige nnniksghvk parrrkrrks ifvqkkrrss avdlnaagsa
      721 eeseddepda medetgseet sselrddqtd tssaevpstr prravtlrss teldrpppte
      781 rarrsrrpqp hsynevekct qvkeeikqee eeklildsnp lewtvtdvvr fikltdcapl
      841 akifqeqdid gqalllltlp tvqecmelkl gpaiklchqi ervkvafyaq yan
//
LOCUS       XP_053911045             639 aa            linear   VRT 09-MAR-2023
DEFINITION  scm-like with four MBT domains protein 2 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053911045
VERSION     XP_053911045.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055070.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..639
                     /product="scm-like with four MBT domains protein 2 isoform
                     X2"
                     /calculated_mol_wt=72126
     Region          <1..29
                     /region_name="MBT"
                     /note="malignant brain tumor (MBT) repeat; cl45897"
                     /db_xref="CDD:459242"
     Region          46..138
                     /region_name="MBT_SFMBT2_rpt3"
                     /note="three malignant brain tumor (MBT) repeat found in
                     Scm-like with four MBT domains protein 2 (SFMBT2);
                     cd20116"
                     /db_xref="CDD:439106"
     Region          155..245
                     /region_name="MBT_SFMBT2_rpt4"
                     /note="fourth malignant brain tumor (MBT) repeat found in
                     Scm-like with four MBT domains protein 2 (SFMBT2);
                     cd20118"
                     /db_xref="CDD:439108"
     Region          276..391
                     /region_name="SLED"
                     /note="SLED domain; pfam12140"
                     /db_xref="CDD:463469"
     Region          560..639
                     /region_name="SAM_Scm-like-4MBT1,2"
                     /note="SAM domain of Scm-like-4MBT1,2 proteins of Polycomb
                     group; cd09581"
                     /db_xref="CDD:188980"
     Site            order(594..596,598..599,602..603,606..607,612)
                     /site_type="other"
                     /note="putative oligomer interface ML [polypeptide
                     binding]"
                     /db_xref="CDD:188980"
     Site            order(615..618,620..621,624,627)
                     /site_type="other"
                     /note="putative oligomer interface EH [polypeptide
                     binding]"
                     /db_xref="CDD:188980"
     CDS             1..639
                     /gene="SFMBT2"
                     /coded_by="XM_054055070.1:131..2050"
                     /db_xref="GeneID:104066387"
ORIGIN      
        1 mdppadiysl ktisewksal ekslndaanf plpmevfkdh adlrnhfftv gmkleavntr
       61 epfhicpasv tkvfnnhylq vtiddlrhep skismlchad slgilpiqwc lkngvnltpp
      121 kgysgqdfdw adyqkqcgae aaphvcfrnt sfsrgftknm kleavnpknp aeicvasits
      181 vkgrlmwihl egsqmpspey ivdvestdif pvgwceangy nltpphkavl rrkrriavvq
      241 pekqlpsavp vekiphdlcs vpqpdttgti ngryccpqly inhrcfsgpy lnkgriaelp
      301 qsvgpgkcvl vlkevlsmvi naaykpgsvl relqlvedpq wnfqeetlka kyrgktyrat
      361 vkivrtsdqv adfcrrvcak leccpnlfsp vlvaevcpen csihtktkyt yyygkrkkii
      421 kppigennni ksghvkparr rkrrksifvq kkrrssavdl naagsaeese ddepdamede
      481 tgseetssel rddqtdtssa evpstrprra vtlrssteld rpppterarr srrpqphsyn
      541 evekctqvke eikqeeeekl ildsnplewt vtdvvrfikl tdcaplakif qeqdidgqal
      601 llltlptvqe cmelklgpai klchqiervk vafyaqyan
//
LOCUS       XP_009559395             345 aa            linear   VRT 09-MAR-2023
DEFINITION  myb/SANT-like DNA-binding domain-containing protein 4 [Cuculus
            canorus].
ACCESSION   XP_009559395
VERSION     XP_009559395.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009561100.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..345
                     /product="myb/SANT-like DNA-binding domain-containing
                     protein 4"
                     /calculated_mol_wt=41022
     Region          8..85
                     /region_name="Myb_DNA-bind_5"
                     /note="Myb/SANT-like DNA-binding domain; pfam13873"
                     /db_xref="CDD:433544"
     Region          <189..>345
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..345
                     /gene="MSANTD4"
                     /coded_by="XM_009561100.2:225..1262"
                     /db_xref="GeneID:104059427"
ORIGIN      
        1 mkqlkrkrks nfsvqetqtl lkeirkrrev lfskqlntti nemkrkawee iaecvnavge
       61 geqrtgtevk rryldwralm krkrlnanik vvgagfhlps snlddslned mdekmgfaie
      121 ssfewqnitd freaggslte ikveeeeedp qnfefpieee eeilssvlpd skkendlpdf
      181 phieefgsls saqarlayed shllinlekq kvnlekqrld ieterlqvek erlqiekerl
      241 rhvdlererl qiekerlqie weklrletlh aekpalendl tqtekpivqp ldleteklkl
      301 ekerlqleke rlqflkfese klqiekerlq vekerlriqr eghlq
//
LOCUS       XP_053911068             345 aa            linear   VRT 09-MAR-2023
DEFINITION  myb/SANT-like DNA-binding domain-containing protein 4 [Cuculus
            canorus].
ACCESSION   XP_053911068
VERSION     XP_053911068.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055093.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..345
                     /product="myb/SANT-like DNA-binding domain-containing
                     protein 4"
                     /calculated_mol_wt=41022
     Region          8..85
                     /region_name="Myb_DNA-bind_5"
                     /note="Myb/SANT-like DNA-binding domain; pfam13873"
                     /db_xref="CDD:433544"
     Region          <189..>345
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..345
                     /gene="MSANTD4"
                     /coded_by="XM_054055093.1:395..1432"
                     /db_xref="GeneID:104059427"
ORIGIN      
        1 mkqlkrkrks nfsvqetqtl lkeirkrrev lfskqlntti nemkrkawee iaecvnavge
       61 geqrtgtevk rryldwralm krkrlnanik vvgagfhlps snlddslned mdekmgfaie
      121 ssfewqnitd freaggslte ikveeeeedp qnfefpieee eeilssvlpd skkendlpdf
      181 phieefgsls saqarlayed shllinlekq kvnlekqrld ieterlqvek erlqiekerl
      241 rhvdlererl qiekerlqie weklrletlh aekpalendl tqtekpivqp ldleteklkl
      301 ekerlqleke rlqflkfese klqiekerlq vekerlriqr eghlq
//
LOCUS       XP_053911077             629 aa            linear   VRT 09-MAR-2023
DEFINITION  NF-kappa-B inhibitor zeta isoform X1 [Cuculus canorus].
ACCESSION   XP_053911077
VERSION     XP_053911077.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055102.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..629
                     /product="NF-kappa-B inhibitor zeta isoform X1"
                     /calculated_mol_wt=68888
     Region          325..592
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(343,345,349..350,353..355,357..358,362,365,377,379,
                     381,385..386,389..391,393..394,398,401,410,412,414,
                     418..419,422..424,426..427,431,433)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          343..377
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          379..410
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          412..436
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(451,453,457..458,461..463,492..493,497,500,509,512,
                     514,518..519,522..524,526..527,531,534,546,548,550,
                     554..555,558..560,566..567,571,574,583)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          451..509
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          512..546
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          548..583
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..629
                     /gene="NFKBIZ"
                     /coded_by="XM_054055102.1:272..2161"
                     /db_xref="GeneID:104054269"
ORIGIN      
        1 maggkqhrgp fqgvrvknsv kelllhfrss kqmssgsaae egkaqgglvn yeqytaelks
       61 ilghsgkrka pellsdgpsf krqatvhphl ltppqtptsv dnmeethksd pkhdsnsdll
      121 qniiniknes spislntvqv swlhtvsshs spgeqyqdsp gtqafspsqk yqafqdqtsq
      181 hmldlpqhyq fppsqnqdls qsypsdasle yrpfgandqs pgyqqntfes helqycpsqs
      241 fssllndseg segisaplqp lnsahpqadv sqrapnfsll sdnmcgslec nvslaalnvs
      301 lpdqniarst tqlgksffqw qveqeenkla nisqdqflak dadgdtflhi avaqgrrals
      361 yvlarkmaal hmldikehng qsafqvavaa nqhlivqdlv slgaqvnttd cwgrtplhvc
      421 aekghaqvlq aiqkgaigsn qyvdleatny dgltalhcav lahnavlhel qnsqpphspe
      481 vqelllrnks lvetiktliq mgasveakdr ksgrsalhla aeeanlelir lflelpnyls
      541 fvnakayngn talhvaaslq yrmsqldavr llmrkgadps arnleneqpv hlvpdglvge
      601 qvkkqdsplf sfvlsiqkpy sspkvsfgf
//
LOCUS       XP_053911082             628 aa            linear   VRT 09-MAR-2023
DEFINITION  NF-kappa-B inhibitor zeta isoform X2 [Cuculus canorus].
ACCESSION   XP_053911082
VERSION     XP_053911082.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055107.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..628
                     /product="NF-kappa-B inhibitor zeta isoform X2"
                     /calculated_mol_wt=68817
     Region          324..591
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(342,344,348..349,352..354,356..357,361,364,376,378,
                     380,384..385,388..390,392..393,397,400,409,411,413,
                     417..418,421..423,425..426,430,432)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          342..376
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          378..409
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          411..435
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(450,452,456..457,460..462,491..492,496,499,508,511,
                     513,517..518,521..523,525..526,530,533,545,547,549,
                     553..554,557..559,565..566,570,573,582)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          450..508
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          511..545
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          547..582
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..628
                     /gene="NFKBIZ"
                     /coded_by="XM_054055107.1:272..2158"
                     /db_xref="GeneID:104054269"
ORIGIN      
        1 maggkqhrgp fqgvrvknsv kelllhfrss kqmssgsaae egkaqgglvn yeqytelksi
       61 lghsgkrkap ellsdgpsfk rqatvhphll tppqtptsvd nmeethksdp khdsnsdllq
      121 niinikness pislntvqvs wlhtvsshss pgeqyqdspg tqafspsqky qafqdqtsqh
      181 mldlpqhyqf ppsqnqdlsq sypsdasley rpfgandqsp gyqqntfesh elqycpsqsf
      241 ssllndsegs egisaplqpl nsahpqadvs qrapnfslls dnmcgslecn vslaalnvsl
      301 pdqniarstt qlgksffqwq veqeenklan isqdqflakd adgdtflhia vaqgrralsy
      361 vlarkmaalh mldikehngq safqvavaan qhlivqdlvs lgaqvnttdc wgrtplhvca
      421 ekghaqvlqa iqkgaigsnq yvdleatnyd gltalhcavl ahnavlhelq nsqpphspev
      481 qelllrnksl vetiktliqm gasveakdrk sgrsalhlaa eeanlelirl flelpnylsf
      541 vnakayngnt alhvaaslqy rmsqldavrl lmrkgadpsa rnleneqpvh lvpdglvgeq
      601 vkkqdsplfs fvlsiqkpys spkvsfgf
//
LOCUS       XP_053911092             618 aa            linear   VRT 09-MAR-2023
DEFINITION  NF-kappa-B inhibitor zeta isoform X3 [Cuculus canorus].
ACCESSION   XP_053911092
VERSION     XP_053911092.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055117.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..618
                     /product="NF-kappa-B inhibitor zeta isoform X3"
                     /calculated_mol_wt=67737
     Region          325..611
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(343,345,349..350,353..355,357..358,362,365,377,379,
                     381,385..386,389..391,393..394,398,401,410,412,414,
                     418..419,422..424,426..427,431,433)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          343..377
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          379..410
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          412..436
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(451,453,457..458,461..463,492..493,497,500,509,512,
                     514,518..519,522..524,526..527,531,534,546,548,550,
                     554..555,558..560,566..567,571,574,583)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          451..509
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          512..546
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          548..583
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..618
                     /gene="NFKBIZ"
                     /coded_by="XM_054055117.1:272..2128"
                     /db_xref="GeneID:104054269"
ORIGIN      
        1 maggkqhrgp fqgvrvknsv kelllhfrss kqmssgsaae egkaqgglvn yeqytaelks
       61 ilghsgkrka pellsdgpsf krqatvhphl ltppqtptsv dnmeethksd pkhdsnsdll
      121 qniiniknes spislntvqv swlhtvsshs spgeqyqdsp gtqafspsqk yqafqdqtsq
      181 hmldlpqhyq fppsqnqdls qsypsdasle yrpfgandqs pgyqqntfes helqycpsqs
      241 fssllndseg segisaplqp lnsahpqadv sqrapnfsll sdnmcgslec nvslaalnvs
      301 lpdqniarst tqlgksffqw qveqeenkla nisqdqflak dadgdtflhi avaqgrrals
      361 yvlarkmaal hmldikehng qsafqvavaa nqhlivqdlv slgaqvnttd cwgrtplhvc
      421 aekghaqvlq aiqkgaigsn qyvdleatny dgltalhcav lahnavlhel qnsqpphspe
      481 vqelllrnks lvetiktliq mgasveakdr ksgrsalhla aeeanlelir lflelpnyls
      541 fvnakayngn talhvaaslq yrmsqldavr llmrkgadps arnleneqpv hlvpdglvge
      601 qirrilkgka iqqrvspf
//
LOCUS       XP_053911102             617 aa            linear   VRT 09-MAR-2023
DEFINITION  NF-kappa-B inhibitor zeta isoform X4 [Cuculus canorus].
ACCESSION   XP_053911102
VERSION     XP_053911102.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055127.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..617
                     /product="NF-kappa-B inhibitor zeta isoform X4"
                     /calculated_mol_wt=67666
     Region          324..610
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(342,344,348..349,352..354,356..357,361,364,376,378,
                     380,384..385,388..390,392..393,397,400,409,411,413,
                     417..418,421..423,425..426,430,432)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          342..376
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          378..409
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          411..435
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(450,452,456..457,460..462,491..492,496,499,508,511,
                     513,517..518,521..523,525..526,530,533,545,547,549,
                     553..554,557..559,565..566,570,573,582)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          450..508
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          511..545
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          547..582
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..617
                     /gene="NFKBIZ"
                     /coded_by="XM_054055127.1:272..2125"
                     /db_xref="GeneID:104054269"
ORIGIN      
        1 maggkqhrgp fqgvrvknsv kelllhfrss kqmssgsaae egkaqgglvn yeqytelksi
       61 lghsgkrkap ellsdgpsfk rqatvhphll tppqtptsvd nmeethksdp khdsnsdllq
      121 niinikness pislntvqvs wlhtvsshss pgeqyqdspg tqafspsqky qafqdqtsqh
      181 mldlpqhyqf ppsqnqdlsq sypsdasley rpfgandqsp gyqqntfesh elqycpsqsf
      241 ssllndsegs egisaplqpl nsahpqadvs qrapnfslls dnmcgslecn vslaalnvsl
      301 pdqniarstt qlgksffqwq veqeenklan isqdqflakd adgdtflhia vaqgrralsy
      361 vlarkmaalh mldikehngq safqvavaan qhlivqdlvs lgaqvnttdc wgrtplhvca
      421 ekghaqvlqa iqkgaigsnq yvdleatnyd gltalhcavl ahnavlhelq nsqpphspev
      481 qelllrnksl vetiktliqm gasveakdrk sgrsalhlaa eeanlelirl flelpnylsf
      541 vnakayngnt alhvaaslqy rmsqldavrl lmrkgadpsa rnleneqpvh lvpdglvgeq
      601 irrilkgkai qqrvspf
//
LOCUS       XP_053911110             708 aa            linear   VRT 09-MAR-2023
DEFINITION  NF-kappa-B inhibitor zeta isoform X5 [Cuculus canorus].
ACCESSION   XP_053911110
VERSION     XP_053911110.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055135.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..708
                     /product="NF-kappa-B inhibitor zeta isoform X5"
                     /calculated_mol_wt=76725
     Region          404..671
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(422,424,428..429,432..434,436..437,441,444,456,458,
                     460,464..465,468..470,472..473,477,480,489,491,493,
                     497..498,501..503,505..506,510,512)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          422..456
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          458..489
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          491..515
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(530,532,536..537,540..542,571..572,576,579,588,591,
                     593,597..598,601..603,605..606,610,613,625,627,629,
                     633..634,637..639,645..646,650,653,662)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          530..588
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          591..625
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          627..662
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..708
                     /gene="NFKBIZ"
                     /coded_by="XM_054055135.1:87..2213"
                     /db_xref="GeneID:104054269"
ORIGIN      
        1 mivessrdaa pdagdgggal sspinlayfy gasprssegs cspahsapgs pgsdsdlsvs
       61 ggrreprgga rpalqveqhm aggkqhrgpf qgvrvknsvk elllhfrssk qmssgsaaee
      121 gkaqgglvny eqytaelksi lghsgkrkap ellsdgpsfk rqatvhphll tppqtptsvd
      181 nmeethksdp khdsnsdllq niinikness pislntvqvs wlhtvsshss pgeqyqdspg
      241 tqafspsqky qafqdqtsqh mldlpqhyqf ppsqnqdlsq sypsdasley rpfgandqsp
      301 gyqqntfesh elqycpsqsf ssllndsegs egisaplqpl nsahpqadvs qrapnfslls
      361 dnmcgslecn vslaalnvsl pdqniarstt qlgksffqwq veqeenklan isqdqflakd
      421 adgdtflhia vaqgrralsy vlarkmaalh mldikehngq safqvavaan qhlivqdlvs
      481 lgaqvnttdc wgrtplhvca ekghaqvlqa iqkgaigsnq yvdleatnyd gltalhcavl
      541 ahnavlhelq nsqpphspev qelllrnksl vetiktliqm gasveakdrk sgrsalhlaa
      601 eeanlelirl flelpnylsf vnakayngnt alhvaaslqy rmsqldavrl lmrkgadpsa
      661 rnleneqpvh lvpdglvgeq vkkqdsplfs fvlsiqkpys spkvsfgf
//
LOCUS       XP_053911119             697 aa            linear   VRT 09-MAR-2023
DEFINITION  NF-kappa-B inhibitor zeta isoform X6 [Cuculus canorus].
ACCESSION   XP_053911119
VERSION     XP_053911119.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055144.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..697
                     /product="NF-kappa-B inhibitor zeta isoform X6"
                     /calculated_mol_wt=75573
     Region          404..690
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(422,424,428..429,432..434,436..437,441,444,456,458,
                     460,464..465,468..470,472..473,477,480,489,491,493,
                     497..498,501..503,505..506,510,512)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          422..456
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          458..489
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          491..515
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(530,532,536..537,540..542,571..572,576,579,588,591,
                     593,597..598,601..603,605..606,610,613,625,627,629,
                     633..634,637..639,645..646,650,653,662)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          530..588
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          591..625
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          627..662
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..697
                     /gene="NFKBIZ"
                     /coded_by="XM_054055144.1:87..2180"
                     /db_xref="GeneID:104054269"
ORIGIN      
        1 mivessrdaa pdagdgggal sspinlayfy gasprssegs cspahsapgs pgsdsdlsvs
       61 ggrreprgga rpalqveqhm aggkqhrgpf qgvrvknsvk elllhfrssk qmssgsaaee
      121 gkaqgglvny eqytaelksi lghsgkrkap ellsdgpsfk rqatvhphll tppqtptsvd
      181 nmeethksdp khdsnsdllq niinikness pislntvqvs wlhtvsshss pgeqyqdspg
      241 tqafspsqky qafqdqtsqh mldlpqhyqf ppsqnqdlsq sypsdasley rpfgandqsp
      301 gyqqntfesh elqycpsqsf ssllndsegs egisaplqpl nsahpqadvs qrapnfslls
      361 dnmcgslecn vslaalnvsl pdqniarstt qlgksffqwq veqeenklan isqdqflakd
      421 adgdtflhia vaqgrralsy vlarkmaalh mldikehngq safqvavaan qhlivqdlvs
      481 lgaqvnttdc wgrtplhvca ekghaqvlqa iqkgaigsnq yvdleatnyd gltalhcavl
      541 ahnavlhelq nsqpphspev qelllrnksl vetiktliqm gasveakdrk sgrsalhlaa
      601 eeanlelirl flelpnylsf vnakayngnt alhvaaslqy rmsqldavrl lmrkgadpsa
      661 rnleneqpvh lvpdglvgeq irrilkgkai qqrvspf
//
LOCUS       XP_053911130             696 aa            linear   VRT 09-MAR-2023
DEFINITION  NF-kappa-B inhibitor zeta isoform X7 [Cuculus canorus].
ACCESSION   XP_053911130
VERSION     XP_053911130.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055155.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..696
                     /product="NF-kappa-B inhibitor zeta isoform X7"
                     /calculated_mol_wt=75502
     Region          403..689
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(421,423,427..428,431..433,435..436,440,443,455,457,
                     459,463..464,467..469,471..472,476,479,488,490,492,
                     496..497,500..502,504..505,509,511)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          421..455
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          457..488
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          490..514
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(529,531,535..536,539..541,570..571,575,578,587,590,
                     592,596..597,600..602,604..605,609,612,624,626,628,
                     632..633,636..638,644..645,649,652,661)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          529..587
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          590..624
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          626..661
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..696
                     /gene="NFKBIZ"
                     /coded_by="XM_054055155.1:87..2177"
                     /db_xref="GeneID:104054269"
ORIGIN      
        1 mivessrdaa pdagdgggal sspinlayfy gasprssegs cspahsapgs pgsdsdlsvs
       61 ggrreprgga rpalqveqhm aggkqhrgpf qgvrvknsvk elllhfrssk qmssgsaaee
      121 gkaqgglvny eqytelksil ghsgkrkape llsdgpsfkr qatvhphllt ppqtptsvdn
      181 meethksdpk hdsnsdllqn iiniknessp islntvqvsw lhtvsshssp geqyqdspgt
      241 qafspsqkyq afqdqtsqhm ldlpqhyqfp psqnqdlsqs ypsdasleyr pfgandqspg
      301 yqqntfeshe lqycpsqsfs sllndsegse gisaplqpln sahpqadvsq rapnfsllsd
      361 nmcgslecnv slaalnvslp dqniarsttq lgksffqwqv eqeenklani sqdqflakda
      421 dgdtflhiav aqgrralsyv larkmaalhm ldikehngqs afqvavaanq hlivqdlvsl
      481 gaqvnttdcw grtplhvcae kghaqvlqai qkgaigsnqy vdleatnydg ltalhcavla
      541 hnavlhelqn sqpphspevq elllrnkslv etiktliqmg asveakdrks grsalhlaae
      601 eanlelirlf lelpnylsfv nakayngnta lhvaaslqyr msqldavrll mrkgadpsar
      661 nleneqpvhl vpdglvgeqi rrilkgkaiq qrvspf
//
LOCUS       XP_053911143             423 aa            linear   VRT 09-MAR-2023
DEFINITION  acetyl-CoA acetyltransferase, mitochondrial [Cuculus canorus].
ACCESSION   XP_053911143
VERSION     XP_053911143.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055168.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..423
                     /product="acetyl-CoA acetyltransferase, mitochondrial"
                     /calculated_mol_wt=44322
     Region          39..422
                     /region_name="thiolase"
                     /note="Thiolase are ubiquitous enzymes that catalyze the
                     reversible thiolytic cleavage of 3-ketoacyl-CoA into
                     acyl-CoA and acetyl-CoA, a 2-step reaction involving a
                     covalent intermediate formed with a catalytic cysteine.
                     They are found in prokaryotes and...; cd00751"
                     /db_xref="CDD:238383"
     Site            order(57,84,98,101,105,116..119,127,134..135,138,153,311,
                     313,315,335,412..413)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:238383"
     Site            order(122,381,409)
                     /site_type="active"
                     /db_xref="CDD:238383"
     CDS             1..423
                     /gene="ACAT1"
                     /coded_by="XM_054055168.1:52..1323"
                     /db_xref="GeneID:104055356"
ORIGIN      
        1 maaavavlaw rrrpaaellr alkytsrgya sqrtlnevvi asavrtpigs fqgtlsslpa
       61 tklgsiaikg aidragipaa evkevymgnv lqagqgqapt rqavlgaglp igtpcttvnk
      121 vcasgmksvm maaqslmcgs qdvmiaggme smsnvpytms rgstpyggvk ledlivkdgl
      181 tdaynhihmg ncaentakkf tisreeqdty aigsytkskt awdsgilkne ivpvtvskkg
      241 kpdtevsede eykrvdfskv pklkavfqke ngtvtaanas tlndgaaalv lmtaeaakrl
      301 kvkplariva fadaavdpid fpiapayavp kilsetglkk ediamweine afsvvvlani
      361 kmlgidpqkv ninggavslg hpigmsgari vvhmthalkq gqyglagicn ggggasaili
      421 ekl
//
LOCUS       XP_009567012             193 aa            linear   VRT 09-MAR-2023
DEFINITION  SPRY domain-containing protein 7 isoform X1 [Cuculus canorus].
ACCESSION   XP_009567012
VERSION     XP_009567012.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568717.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..193
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..193
                     /product="SPRY domain-containing protein 7 isoform X1"
                     /calculated_mol_wt=21323
     Region          32..193
                     /region_name="SPRYD7"
                     /note="SPRY domain-containing protein 7; cd12880"
                     /db_xref="CDD:293938"
     CDS             1..193
                     /gene="SPRYD7"
                     /coded_by="XM_009568717.2:39..620"
                     /db_xref="GeneID:104066146"
ORIGIN      
        1 masrccwccr dgedgsvple empavqldtq rmgtdvvivk ngrricgtgg clanaplhqt
       61 ksyfefkiqs tgiwgigvat ekanlnqvpl gqdvhslvlr ndgtlyynke eknrlpvnsl
      121 pqegdvvgit ydhvelnvyl ngrnmhcpas girgtvypvv yvddsaildc qfsdffhppp
      181 pgfekilfeq qif
//
LOCUS       XP_053911165             179 aa            linear   VRT 09-MAR-2023
DEFINITION  SPRY domain-containing protein 7 isoform X2 [Cuculus canorus].
ACCESSION   XP_053911165
VERSION     XP_053911165.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055190.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..179
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..179
                     /product="SPRY domain-containing protein 7 isoform X2"
                     /calculated_mol_wt=19881
     Region          32..>127
                     /region_name="SPRY"
                     /note="SPRY domain; cl02614"
                     /db_xref="CDD:470632"
     CDS             1..179
                     /gene="SPRYD7"
                     /coded_by="XM_054055190.1:39..578"
                     /db_xref="GeneID:104066146"
ORIGIN      
        1 masrccwccr dgedgsvple empavqldtq rmgtdvvivk ngrricgtgg clanaplhqt
       61 ksyfefkiqs tgiwgigvat ekanlnqvpl gqdvhslvlr ndgtlyynke eknrlpvnsl
      121 pqegdvvlmt vlfwivssvi ffihlhqglk rsclssksse ylrtehldsa lllkfchlk
//
LOCUS       XP_053911176             813 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: Holliday junction recognition protein [Cuculus
            canorus].
ACCESSION   XP_053911176
VERSION     XP_053911176.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055201.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..813
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..813
                     /product="LOW QUALITY PROTEIN: Holliday junction
                     recognition protein"
                     /calculated_mol_wt=91829
     CDS             1..813
                     /gene="HJURP"
                     /coded_by="XM_054055201.1:39..2480"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /db_xref="GeneID:104055999"
ORIGIN      
        1 mpgamaldld ldeglrksna rfmvsinril erynqpfedd llismetlty ntckgpkrwe
       61 evsieklrkw kkevlertrg sqsnadlskk qtsdfedghs tinqespens cmdtsdivvg
      121 eesnadiasv rrqfenihfq nhhlddekiq dkvkvqvdai vqdsarkipe witiarqgsp
      181 kglhlaspvq elignqasvc rrkvelsnec sssrpvqlkf cdvpispkri tvprhqcspr
      241 ldktcfilee yqsaddecsw gditladlyp smvetltrlm tkesrrkalk ymfghfrhkk
      301 rrprrlklnv tvdkirgfrp lklkkalpsi cssrseeiwn qtfgdesgel cddncainnl
      361 sgqvpysyid knevkmnysd sslehhlisg kgqkfskhtv fpnvmatmge tflveddlqp
      421 avslknskck eseklvykcs seyhfrtsaa ssgsavlhlv kdsktrktaf pcgdtselcs
      481 sacssygnsn tstlvtncsp lrpsnallpt pekliserri sfqctrsfss lstkqspskm
      541 pqkyedafek lyyklclkei qtpltrplsn sqnlekkggl vkmdlsgsvm fntqydlefn
      601 kiykqlcsea vpelpgiqra shlrkyegvq lsetvnalvn spvrtlsaip rvkrvgnfqn
      661 dllcspvkrl kniperyfts pkcqqiphrk nvnlqtvgmd flstcngsnt sffgshncqs
      721 qdsgfhassd ktfldipsas lqesgiadah sawpramknh shpdnaqkhn krisrklsyt
      781 dgkdkkpsdp lddflvktyr gtftdcyskn ivl
//
LOCUS       XP_053911187             175 aa            linear   VRT 09-MAR-2023
DEFINITION  T-cell receptor-associated transmembrane adapter 1 [Cuculus
            canorus].
ACCESSION   XP_053911187
VERSION     XP_053911187.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055212.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..175
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..175
                     /product="T-cell receptor-associated transmembrane adapter
                     1"
                     /calculated_mol_wt=19867
     Region          8..103
                     /region_name="SIT"
                     /note="SHP2-interacting transmembrane adaptor protein,
                     SIT; pfam15330"
                     /db_xref="CDD:464650"
     CDS             1..175
                     /gene="LOC104055959"
                     /coded_by="XM_054055212.1:314..841"
                     /db_xref="GeneID:104055959"
ORIGIN      
        1 mdchfsiwgi laflslalvv slilnishcm knkqakmykd yednspscdg yyteddpvyg
       61 nlnqdileec cyeqmkcqpq rpdnqlqves asqmcyasld hsikgkrrkp rrkkdpslke
      121 gdeerssnpi mmaskvsiyl nseqlaaent anteaihddp irlmnlihtt kgeni
//
LOCUS       XP_053911193             175 aa            linear   VRT 09-MAR-2023
DEFINITION  T-cell receptor-associated transmembrane adapter 1 [Cuculus
            canorus].
ACCESSION   XP_053911193
VERSION     XP_053911193.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055218.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..175
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..175
                     /product="T-cell receptor-associated transmembrane adapter
                     1"
                     /calculated_mol_wt=19867
     Region          8..103
                     /region_name="SIT"
                     /note="SHP2-interacting transmembrane adaptor protein,
                     SIT; pfam15330"
                     /db_xref="CDD:464650"
     CDS             1..175
                     /gene="LOC104055959"
                     /coded_by="XM_054055218.1:508..1035"
                     /db_xref="GeneID:104055959"
ORIGIN      
        1 mdchfsiwgi laflslalvv slilnishcm knkqakmykd yednspscdg yyteddpvyg
       61 nlnqdileec cyeqmkcqpq rpdnqlqves asqmcyasld hsikgkrrkp rrkkdpslke
      121 gdeerssnpi mmaskvsiyl nseqlaaent anteaihddp irlmnlihtt kgeni
//
LOCUS       XP_053911201             175 aa            linear   VRT 09-MAR-2023
DEFINITION  T-cell receptor-associated transmembrane adapter 1 [Cuculus
            canorus].
ACCESSION   XP_053911201
VERSION     XP_053911201.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055226.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..175
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..175
                     /product="T-cell receptor-associated transmembrane adapter
                     1"
                     /calculated_mol_wt=19867
     Region          8..103
                     /region_name="SIT"
                     /note="SHP2-interacting transmembrane adaptor protein,
                     SIT; pfam15330"
                     /db_xref="CDD:464650"
     CDS             1..175
                     /gene="LOC104055959"
                     /coded_by="XM_054055226.1:214..741"
                     /db_xref="GeneID:104055959"
ORIGIN      
        1 mdchfsiwgi laflslalvv slilnishcm knkqakmykd yednspscdg yyteddpvyg
       61 nlnqdileec cyeqmkcqpq rpdnqlqves asqmcyasld hsikgkrrkp rrkkdpslke
      121 gdeerssnpi mmaskvsiyl nseqlaaent anteaihddp irlmnlihtt kgeni
//
LOCUS       XP_053911216             691 aa            linear   VRT 09-MAR-2023
DEFINITION  hormonally up-regulated neu tumor-associated kinase isoform X1
            [Cuculus canorus].
ACCESSION   XP_053911216
VERSION     XP_053911216.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055241.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..691
                     /product="hormonally up-regulated neu tumor-associated
                     kinase isoform X1"
                     /calculated_mol_wt=77409
     Region          54..315
                     /region_name="STKc_HUNK"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Hormonally up-regulated Neu-associated kinase (also called
                     MAK-V); cd14070"
                     /db_xref="CDD:270972"
     Site            order(63..67,71,84,86,119,135..138,142,144..145,147,
                     180..181,183,185..186,188,198..199,202,218..223,225,
                     254..257,259)
                     /site_type="active"
                     /db_xref="CDD:270972"
     Site            order(63..66,71,84,86,119,135..138,142,185..186,188,
                     198..199)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270972"
     Site            order(142,144..145,147,181,183,185,202,218..223,225,
                     254..257,259)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270972"
     Site            order(198..213,215..223)
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270972"
     CDS             1..691
                     /gene="HUNK"
                     /coded_by="XM_054055241.1:1..2076"
                     /db_xref="GeneID:104064795"
ORIGIN      
        1 mpaaagdglp adpsvpggge arraagaess llaawlsaaa prerlrdfqh tkrvgnylig
       61 rklgegsfak vreglhvltg ekvavkvidk krakkdtyvt knlrregqiq qmirhpniaq
      121 lldiletens yylvmelcpg gnlmhkiyek krleeheark yirqlilave hlhragvvhr
      181 dlkienllld ednniklidf glsncagilg ysdpfstqcg spayaapell arkkygpkid
      241 vwsigvnmya mltgtlpftv epfslralyq kmvdkemnpf ptqlstaain flrsllepdp
      301 akrpniqqal anrwlnenyp grappnvtyp nrihledlsq svllhmtekl gyknsdvint
      361 vlsnrashtl aiyfllnkkl erylaslrkp egqdnichkn qlyqiekyka nkdsyedknl
      421 keqdrkgeil hrqlpkktek npvayrqpss clisqiqntk allkdrkitk agssekdssg
      481 gvspfhepla tktgcvtsss leylevqqpp prtprllkrq espqqepari sgrakdspli
      541 lnivhsfesv dredqidqvs pshqyrilgs pmnfpyksss ertlsplfqp gstspvhptq
      601 vsftyeekay pakeeavspt qlvsnnplgs pncvksrgrf pmmgigqmlr krnqtmqsas
      661 dkplearmpq lqqmsptqis fntadtvsgq c
//
LOCUS       XP_053911225             652 aa            linear   VRT 09-MAR-2023
DEFINITION  hormonally up-regulated neu tumor-associated kinase isoform X2
            [Cuculus canorus].
ACCESSION   XP_053911225
VERSION     XP_053911225.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055250.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..652
                     /product="hormonally up-regulated neu tumor-associated
                     kinase isoform X2"
                     /calculated_mol_wt=72850
     Region          54..315
                     /region_name="STKc_HUNK"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Hormonally up-regulated Neu-associated kinase (also called
                     MAK-V); cd14070"
                     /db_xref="CDD:270972"
     Site            order(63..67,71,84,86,119,135..138,142,144..145,147,
                     180..181,183,185..186,188,198..199,202,218..223,225,
                     254..257,259)
                     /site_type="active"
                     /db_xref="CDD:270972"
     Site            order(63..66,71,84,86,119,135..138,142,185..186,188,
                     198..199)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270972"
     Site            order(142,144..145,147,181,183,185,202,218..223,225,
                     254..257,259)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270972"
     Site            order(198..213,215..223)
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270972"
     CDS             1..652
                     /gene="HUNK"
                     /coded_by="XM_054055250.1:1..1959"
                     /db_xref="GeneID:104064795"
ORIGIN      
        1 mpaaagdglp adpsvpggge arraagaess llaawlsaaa prerlrdfqh tkrvgnylig
       61 rklgegsfak vreglhvltg ekvavkvidk krakkdtyvt knlrregqiq qmirhpniaq
      121 lldiletens yylvmelcpg gnlmhkiyek krleeheark yirqlilave hlhragvvhr
      181 dlkienllld ednniklidf glsncagilg ysdpfstqcg spayaapell arkkygpkid
      241 vwsigvnmya mltgtlpftv epfslralyq kmvdkemnpf ptqlstaain flrsllepdp
      301 akrpniqqal anrwlnenyp grappnvtyp nrihledlsq svllhmtekl gyknsdvint
      361 vlsnrashtl aiyfllnkkl erylaslrkp egqdnichkn qlyqiekyka nkdsyeiqnt
      421 kallkdrkit kagssekdss ggvspfhepl atktgcvtss sleylevqqp pprtprllkr
      481 qespqqepar isgrakdspl ilnivhsfes vdredqidqv spshqyrilg spmnfpykss
      541 sertlsplfq pgstspvhpt qvsftyeeka ypakeeavsp tqlvsnnplg spncvksrgr
      601 fpmmgigqml rkrnqtmqsa sdkplearmp qlqqmsptqi sfntadtvsg qc
//
LOCUS       XP_009564838             987 aa            linear   VRT 09-MAR-2023
DEFINITION  klotho [Cuculus canorus].
ACCESSION   XP_009564838
VERSION     XP_009564838.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566543.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564838.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..987
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..987
                     /product="klotho"
                     /calculated_mol_wt=113862
     Region          42..476
                     /region_name="Glycosyl hydrolases"
                     /note="A functionally diverse superfamily containing
                     glycosyl hydrolase families 1,5,10,17,44,72, and others;
                     cl23725"
                     /db_xref="CDD:474034"
     Region          552..928
                     /region_name="Glycosyl hydrolases"
                     /note="A functionally diverse superfamily containing
                     glycosyl hydrolase families 1,5,10,17,44,72, and others;
                     cl23725"
                     /db_xref="CDD:474034"
     CDS             1..987
                     /gene="KL"
                     /coded_by="XM_009566543.2:23..2986"
                     /db_xref="GeneID:104064240"
ORIGIN      
        1 mdraalllpl llgrpllgap gqgertwsrf arlpypqdql flhdtfpdgf lwgagsaayq
       61 teggwrqggk gasvwdafsh rpaggdaggp aggdvasdsy nnlyrdvegl rllgvshyrf
      121 slswarlmpn gtvpvnpagl ahyhrllehl reldiepvvt lyhwdlpqal qdafggwtsp
      181 vlpqlfsdya elcfrhfggr vrywltmdnp yvvawhgygt grlppgvqgg prlgyraahh
      241 llqahakvwh lynehfrptq rgkvsialss hwikpqhmte knikecqksl dfvlgwfakp
      301 ifidgdypes mrsnlssllp eftevekiyi kgtadffals fgatlsfqll dsymkfqqle
      361 sislrqllyw isseynnpei fivenswfvs gstkrddaky iyylkkfime tlkairydgv
      421 nvfgytvwsl ldgfewhrgy sirrglfyvd fqshdkklmp kssvlfyqkl iekngfpplp
      481 enqpmegifp cgfawgvvdn yiqvdttpaq fldsnvyvwd vhqtkklikv dgvftskrkh
      541 hcvdfaairl qisllqemhv thfhfslkws silplgnlsl inhtlihyyq cfasellrvn
      601 itpvvalwqp madnqelpvs lakygawenp etvqafveya kfcftslgdh ikfwitmnep
      661 svknltytag hnllkahaka whlydkefrr sqkgkisial qadwvepacp fsrndqevad
      721 rvlefdigwl aepiygngdy pqvmrawlhr rnsvdlynfh lpyfsedekk liqgsfdffa
      781 lshytttlvg wekedalkyd hylevqmind itwlhspsra avvpwglrkl lkwvkskygd
      841 vpiyvtangi dddhnmvhdk lrvyyiqnyi nealkaytld ninlqgyfvy sfndktapky
      901 glysyvanqy epkpsmkhyr eiisnngfpg pespevmcpe eiascpechf frtrksllvf
      961 vsfifvgfiv tiffityysk rverryk
//
LOCUS       XP_053911244             634 aa            linear   VRT 09-MAR-2023
DEFINITION  netrin-4 [Cuculus canorus].
ACCESSION   XP_053911244
VERSION     XP_053911244.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055269.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..634
                     /product="netrin-4"
                     /calculated_mol_wt=69510
     Region          40..266
                     /region_name="Laminin_N"
                     /note="Laminin N-terminal (Domain VI); pfam00055"
                     /db_xref="CDD:459653"
     Region          267..326
                     /region_name="EGF_Lam"
                     /note="Laminin-type epidermal growth factor-like domain;
                     laminins are the major noncollagenous components of
                     basement membranes that mediate cell adhesion, growth
                     migration, and differentiation; the laminin-type epidermal
                     growth factor-like module occurs in...; cd00055"
                     /db_xref="CDD:238012"
     Site            order(268,270,277,299,301,310)
                     /site_type="active"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     Region          338..398
                     /region_name="Laminin_EGF"
                     /note="Laminin EGF domain; pfam00053"
                     /db_xref="CDD:395007"
     Site            order(338,340,347,365,368,377)
                     /site_type="active"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     Region          401..452
                     /region_name="EGF_Lam"
                     /note="Laminin-type epidermal growth factor-like domai;
                     smart00180"
                     /db_xref="CDD:214543"
     Site            order(401,403,419,426,428,437)
                     /site_type="active"
                     /note="EGF-like motif [active]"
                     /db_xref="CDD:238012"
     Region          523..632
                     /region_name="NTR_netrin-4_like"
                     /note="NTR domain, Netrin-4-like subfamily; composed of
                     the C-terminal NTR domains of netrin-4 (beta netrin) and
                     similar proteins. Netrins are secreted proteins that
                     function as tropic cues in the direction of axon growth
                     and cell migration during neural...; cd03578"
                     /db_xref="CDD:239633"
     CDS             1..634
                     /gene="NTN4"
                     /coded_by="XM_054055269.1:50..1954"
                     /db_xref="GeneID:104055190"
ORIGIN      
        1 mgrgmgpppp plpllllpll iagaglgsva ragspcekac nprmgnlahg ralqtettcg
       61 hrttepfcay tedaqrrckr ptcgrcsrah aglahpaaam adspfrlprt wwqaaqdalr
      121 etirldleat fyfthlilvf ksprpaamvl ersqdfgetw kpykyfaanc satfgleddv
      181 eqrgaictsr ysspfpctgg eviyralspp ytaedpysae aqaqlkitnl rvrllerqgc
      241 pclpadpdpr plpplhyaiy dfivkgscfc nghadhcvpv tgfkpvktag vfhvvhgkcm
      301 ckhntagshc qhcaplyndq pwqaadgktg apkecqsckc nghadtchfd mdawlasgnr
      361 sggvcdncqh ntegqhcqrc kpgfyrdlrk pfsapdackp cschplgsat lplgprtfcd
      421 pstgdcpckp gvagphcdrc lpgywgfgay gcrpcdcars cdprtgdchs sssdvtwhhe
      481 appfqavlne septwgwede qgfsalrhsg kceckeqvlg npkvfcgmky tyviktkils
      541 ahdkgshaev iakikkvlks tklkilrgkr tlypeswtnr gctcpilnpg leylvaghed
      601 irtgrlivnm ksfvhqwksa lgrkvlemlk rdci
//
LOCUS       XP_053911257             411 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor Dp-1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911257
VERSION     XP_053911257.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055282.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..411
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..411
                     /product="transcription factor Dp-1 isoform X1"
                     /calculated_mol_wt=45151
     Region          112..194
                     /region_name="E2F_TDP"
                     /note="E2F/DP family winged-helix DNA-binding domain;
                     pfam02319"
                     /db_xref="CDD:460530"
     Site            order(199,203,206..207,209..210,213..214,216..217,
                     220..221,224,227..228,231,234..235,237..238,240..242,245,
                     256..267,269,280..288,290,292,294,300..301,303)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:271217"
     Region          199..245
                     /region_name="coiled coil"
                     /note="coiled coil [structural motif]"
                     /db_xref="CDD:271217"
     Region          201..339
                     /region_name="DP"
                     /note="Transcription factor DP; pfam08781"
                     /db_xref="CDD:462601"
     Site            order(223,226..227,230,263,272,274,289..296,303)
                     /site_type="other"
                     /note="RbC binding site [polypeptide binding]"
                     /db_xref="CDD:271217"
     CDS             1..411
                     /gene="TFDP1"
                     /coded_by="XM_054055282.1:267..1502"
                     /db_xref="GeneID:104056621"
ORIGIN      
        1 makdagliea ngelkvfidq nlspgkgvvs llavhpstvn tigkqllpkt fgqsnvniaq
       61 qvvigtpqrp sapntilvgs phtpnthfvs qnqtadsspw sagkrnkkge kngkglrhfs
      121 mkvcekvqrk gttsynevad elvaefsttd nhispnesqa ydqknirrrv ydalnvlmam
      181 niiskekkei kwiglptnsa qecqnlevek qrrlerikqk qsqlqelilq qiafknlvqr
      241 nrqaeqqanr pppsnsvihl pfiivntskk tvidcsisnd kfeylfnfdn tfeihddiev
      301 lkrmgmacgl esgscsaedl kiarslvpka lepyvtemaq gsissvyvts sgsasngtrf
      361 stsdfsnggd gmlatssngs qysgsrvetp vsyvgddddd dddfnenddd d
//
LOCUS       XP_053911268             411 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor Dp-1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911268
VERSION     XP_053911268.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055293.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..411
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..411
                     /product="transcription factor Dp-1 isoform X1"
                     /calculated_mol_wt=45151
     Region          112..194
                     /region_name="E2F_TDP"
                     /note="E2F/DP family winged-helix DNA-binding domain;
                     pfam02319"
                     /db_xref="CDD:460530"
     Site            order(199,203,206..207,209..210,213..214,216..217,
                     220..221,224,227..228,231,234..235,237..238,240..242,245,
                     256..267,269,280..288,290,292,294,300..301,303)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:271217"
     Region          199..245
                     /region_name="coiled coil"
                     /note="coiled coil [structural motif]"
                     /db_xref="CDD:271217"
     Region          201..339
                     /region_name="DP"
                     /note="Transcription factor DP; pfam08781"
                     /db_xref="CDD:462601"
     Site            order(223,226..227,230,263,272,274,289..296,303)
                     /site_type="other"
                     /note="RbC binding site [polypeptide binding]"
                     /db_xref="CDD:271217"
     CDS             1..411
                     /gene="TFDP1"
                     /coded_by="XM_054055293.1:212..1447"
                     /db_xref="GeneID:104056621"
ORIGIN      
        1 makdagliea ngelkvfidq nlspgkgvvs llavhpstvn tigkqllpkt fgqsnvniaq
       61 qvvigtpqrp sapntilvgs phtpnthfvs qnqtadsspw sagkrnkkge kngkglrhfs
      121 mkvcekvqrk gttsynevad elvaefsttd nhispnesqa ydqknirrrv ydalnvlmam
      181 niiskekkei kwiglptnsa qecqnlevek qrrlerikqk qsqlqelilq qiafknlvqr
      241 nrqaeqqanr pppsnsvihl pfiivntskk tvidcsisnd kfeylfnfdn tfeihddiev
      301 lkrmgmacgl esgscsaedl kiarslvpka lepyvtemaq gsissvyvts sgsasngtrf
      361 stsdfsnggd gmlatssngs qysgsrvetp vsyvgddddd dddfnenddd d
//
LOCUS       XP_053911274             410 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor Dp-1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053911274
VERSION     XP_053911274.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055299.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..410
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..410
                     /product="transcription factor Dp-1 isoform X2"
                     /calculated_mol_wt=45022
     Region          112..193
                     /region_name="E2F_TDP"
                     /note="E2F/DP family winged-helix DNA-binding domain;
                     pfam02319"
                     /db_xref="CDD:460530"
     Site            order(198,202,205..206,208..209,212..213,215..216,
                     219..220,223,226..227,230,233..234,236..237,239..241,244,
                     255..266,268,279..287,289,291,293,299..300,302)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:271217"
     Region          198..244
                     /region_name="coiled coil"
                     /note="coiled coil [structural motif]"
                     /db_xref="CDD:271217"
     Region          200..338
                     /region_name="DP"
                     /note="Transcription factor DP; pfam08781"
                     /db_xref="CDD:462601"
     Site            order(222,225..226,229,262,271,273,288..295,302)
                     /site_type="other"
                     /note="RbC binding site [polypeptide binding]"
                     /db_xref="CDD:271217"
     CDS             1..410
                     /gene="TFDP1"
                     /coded_by="XM_054055299.1:270..1502"
                     /db_xref="GeneID:104056621"
ORIGIN      
        1 makdagliea ngelkvfidq nlspgkgvvs llavhpstvn tigkqllpkt fgqsnvniaq
       61 qvvigtpqrp sapntilvgs phtpnthfvs qnqtadsspw sagkrnkkge kngkglrhfs
      121 mkvcekvqrk gttsynevad elvaefsttd nhispnesay dqknirrrvy dalnvlmamn
      181 iiskekkeik wiglptnsaq ecqnlevekq rrlerikqkq sqlqelilqq iafknlvqrn
      241 rqaeqqanrp ppsnsvihlp fiivntskkt vidcsisndk feylfnfdnt feihddievl
      301 krmgmacgle sgscsaedlk iarslvpkal epyvtemaqg sissvyvtss gsasngtrfs
      361 tsdfsnggdg mlatssngsq ysgsrvetpv syvgdddddd ddfnendddd
//
LOCUS       XP_053911286             293 aa            linear   VRT 09-MAR-2023
DEFINITION  protein EURL homolog [Cuculus canorus].
ACCESSION   XP_053911286
VERSION     XP_053911286.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055311.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..293
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..293
                     /product="protein EURL homolog"
                     /calculated_mol_wt=33489
     Region          1..289
                     /region_name="EURL"
                     /note="EURL protein; pfam06937"
                     /db_xref="CDD:284377"
     CDS             1..293
                     /gene="C1H21orf91"
                     /coded_by="XM_054055311.1:235..1116"
                     /db_xref="GeneID:104061594"
ORIGIN      
        1 mneeqfvsid ldddnvcsvc klgteketls fchvcfelni egvpksdllh trslrghrdc
       61 fekfhlianq dcprsklsks pyaevknils rkinwiiqya qnkeldsdpe nskpsqhqlf
      121 nfrhqtdrkl lpqcdspvpr ysakwidgns gsisscsetl leqresadfr lgvlqetgat
      181 fccssvlwsd rnqaqkaeka egdslnslrr rqhqysreel tvmtpgelkq lnekllkqiq
      241 dvfeeltqqv qekdslasel nvrhiaieql lknysklpcl qmgrtgmrsn vpi
//
LOCUS       XP_053911299             770 aa            linear   VRT 09-MAR-2023
DEFINITION  carnitine O-palmitoyltransferase 1, muscle isoform isoform X1
            [Cuculus canorus].
ACCESSION   XP_053911299
VERSION     XP_053911299.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055324.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..770
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..770
                     /product="carnitine O-palmitoyltransferase 1, muscle
                     isoform isoform X1"
                     /calculated_mol_wt=87634
     Region          1..47
                     /region_name="CPT_N"
                     /note="Carnitine O-palmitoyltransferase N-terminus;
                     pfam16484"
                     /db_xref="CDD:465132"
     Region          174..754
                     /region_name="Carn_acyltransf"
                     /note="Choline/Carnitine o-acyltransferase; pfam00755"
                     /db_xref="CDD:459926"
     CDS             1..770
                     /gene="CPT1B"
                     /coded_by="XM_054055324.1:103..2415"
                     /db_xref="GeneID:128850524"
ORIGIN      
        1 maeahqavaf qftvtpegld fhlsreaikh lylaglsswk krlvraknsf ltgvypasps
       61 swmvvvmata gsfychvdps lgmiarirhc lpqsrflsda sgtalsavvf stgvwlsavv
      121 lfrqtlklll syhgwmfeph grmsrstriw valmkllsvr kpllysfqaa lpklpvptve
      181 atvrrylesv rpllddteyh rmevlakefq ektaprlqky lilkswwttn yvsdwweeyi
      241 ylrgrsplmv nsnyyamdfl yvtpshvqaa ragnavhaml lyrrkldrge ippmmalgiv
      301 pmcsyqserm fnttripgke tdtllhlvds khlavyhkgr fykvwlyygg qllrprdlem
      361 qfqrilddps ppqpgeerla altagervpw aeararffsq gknktsleai eraaffltld
      421 eeehgyspgr egcmddyaks llhghcydrw fdksftlvvy kngklganae hswadapiig
      481 hlwefmlatd kfqlgytegg hcrgdpdtrl sppqrlqwdl teecraaies sfrvakalad
      541 dvdfccfqfs afgkglikrc rtspdafiqi slqlahfrdk gcfcltyeas mtrlfregrt
      601 etvrscttes tafvrsmvda rqtraerqrl fkvaaekhqh myrmamtgag idrhlfclyv
      661 vsrflgmesp flaqvlsepw rlstsqtpqq qlkmfdldkf pdhvstgggf gpvaddgygv
      721 syiiagenli tfhvsskhss phtdskrfag nirqamldia qlwdkpaggk
//
LOCUS       XP_053911306             736 aa            linear   VRT 09-MAR-2023
DEFINITION  carnitine O-palmitoyltransferase 1, muscle isoform isoform X2
            [Cuculus canorus].
ACCESSION   XP_053911306
VERSION     XP_053911306.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055331.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..736
                     /product="carnitine O-palmitoyltransferase 1, muscle
                     isoform isoform X2"
                     /calculated_mol_wt=83844
     Region          1..47
                     /region_name="CPT_N"
                     /note="Carnitine O-palmitoyltransferase N-terminus;
                     pfam16484"
                     /db_xref="CDD:465132"
     Region          152..720
                     /region_name="Carn_acyltransf"
                     /note="Choline/Carnitine o-acyltransferase; pfam00755"
                     /db_xref="CDD:459926"
     CDS             1..736
                     /gene="CPT1B"
                     /coded_by="XM_054055331.1:103..2313"
                     /db_xref="GeneID:128850524"
ORIGIN      
        1 maeahqavaf qftvtpegld fhlsreaikh lylaglsswk krlvraknsf ltgvypasps
       61 swmvvvmata gsfychvdps lgmiarirhc lpqsrflsda sgtalsavvf stgvwlsavv
      121 lfrqtlklll syhgwmfeph grmsrstriw vylesvrpll ddteyhrmev lakefqekta
      181 prlqkylilk swwttnyvsd wweeyiylrg rsplmvnsny yamdflyvtp shvqaaragn
      241 avhamllyrr kldrgeippm malgivpmcs yqsermfntt ripgketdtl lhlvdskhla
      301 vyhkgrfykv wlyyggqllr prdlemqfqr ilddpsppqp geerlaalta gervpwaear
      361 arffsqgknk tsleaieraa ffltldeeeh gyspgregcm ddyaksllhg hcydrwfdks
      421 ftlvvykngk lganaehswa dapiighlwe fmlatdkfql gytegghcrg dpdtrlsppq
      481 rlqwdlteec raaiessfrv akaladdvdf ccfqfsafgk glikrcrtsp dafiqislql
      541 ahfrdkgcfc ltyeasmtrl fregrtetvr scttestafv rsmvdarqtr aerqrlfkva
      601 aekhqhmyrm amtgagidrh lfclyvvsrf lgmespflaq vlsepwrlst sqtpqqqlkm
      661 fdldkfpdhv stgggfgpva ddgygvsyii agenlitfhv sskhssphtd skrfagnirq
      721 amldiaqlwd kpaggk
//
LOCUS       XP_053911353             334 aa            linear   VRT 09-MAR-2023
DEFINITION  peroxisomal membrane protein PMP34 [Cuculus canorus].
ACCESSION   XP_053911353
VERSION     XP_053911353.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055378.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..334
                     /product="peroxisomal membrane protein PMP34"
                     /calculated_mol_wt=36769
     Region          37..122
                     /region_name="Mito_carr"
                     /note="Mitochondrial carrier protein; pfam00153"
                     /db_xref="CDD:395101"
     Region          <146..223
                     /region_name="Mito_carr"
                     /note="Mitochondrial carrier protein; pfam00153"
                     /db_xref="CDD:395101"
     Region          226..318
                     /region_name="Mito_carr"
                     /note="Mitochondrial carrier protein; pfam00153"
                     /db_xref="CDD:395101"
     CDS             1..334
                     /gene="SLC25A17"
                     /coded_by="XM_054055378.1:27..1031"
                     /db_xref="GeneID:104055505"
ORIGIN      
        1 marrgeavga salpgaaaqs paepgramsa iasyeslvha vsgavgsmta mtvffpldta
       61 rlrlqvdekr kskttpavll eiikeeglla pyrgwfpvis slccsnfvyf ytfnslkalw
      121 vegqhsttgk dlvlgvvagv vnvlsttplw vvntrlklqg akfrnedivp tnykgiidaf
      181 hqiirdegvl alwngtfpsl llvfnpaiqf mfyegfkrkl lkkqlqltsl dafvigavak
      241 avattltypl qtvqsilrfg rhrlnpenrt lgslrnvlyl lqqrvrrfgl mglykgleak
      301 llqtvltaal mflvyeklta atftvmglkh srkl
//
LOCUS       XP_053911363            1066 aa            linear   VRT 09-MAR-2023
DEFINITION  IQ motif and SEC7 domain-containing protein 3 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053911363
VERSION     XP_053911363.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055388.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1066
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1066
                     /product="IQ motif and SEC7 domain-containing protein 3
                     isoform X1"
                     /calculated_mol_wt=117418
     Region          657..845
                     /region_name="Sec7"
                     /note="Sec7 domain; pfam01369"
                     /db_xref="CDD:460178"
     Region          867..996
                     /region_name="IQ_SEC7_PH"
                     /note="PH domain; pfam16453"
                     /db_xref="CDD:465120"
     CDS             1..1066
                     /gene="IQSEC3"
                     /coded_by="XM_054055388.1:153..3353"
                     /db_xref="GeneID:104056357"
ORIGIN      
        1 mesllenpvr avlylkelta ivqnqqslih tqrqridele rrldelsten rnlrgqqqqq
       61 qpplaepsaa apappeqppp ppgqpdslqh hqqlpaqqpq pqpgqpdslq hhqqlppqpp
      121 pgkqagagpg gggraaghqh pavqphqhpa erdgrdkgcc aallqhktpq aigkgvlsrr
      181 penetvlhqf ccpaadaeqk pssadsspsd dpsdstskka gcetedpkea grqsgqegrs
      241 etltlkaqha elqeeqaagc splvqkaslh htgspvrvqr skgtascsha aasdyelsld
      301 lknkqiemle hkygghlvsr raactiqtaf rqyqlsknfe kirnsllesr mprrislrkv
      361 rvqnsesfsa ekalvegynf vgiplvrsps lpatisgalt eledsfteqv qslaksidda
      421 lstwslktmc slqdggsyqi retfsassmq pnqeleaelq dkekeegllp dtlpkssstl
      481 mmafrdvtvq idnknisvss stsvsmancl snnaqaglaq atkaeespge gegeaseppa
      541 apeslpesra aqnshtftev nvstngteds saepeqmavq klqfdatnet gqskgsesen
      601 adnseqlsss ststsaksas evsskealqa milslpryhc enpasckspt lstdtmrkrl
      661 yriglnlfni npdkgiqfli srgfipdtpi gvahfllqrk glsrqmigef lgnskkqfnr
      721 dvldcvvdem dfsgmeldea lrkfqahirv qgeaqkverl ieafsqrycm cnpdvvqqfh
      781 npdtifilaf aiillntdmy spnikpdrkm mledfirnlr gvddgadipr elvvgiyeri
      841 qqkelksned hvtyvtkvek sivgmktvls vphrrlvccs rlyevtdvnk vqkqaahqre
      901 vflfndllvi lklcpkkkss stytfcksvg llgmqfhlfe neyyphgitl vtpvsgsekk
      961 qvlhfcalga eemqkfvedl kesiaevtel eqiriewele kqqgakslsl rtngaqmelq
     1021 skqgsptgkk dlgekvsdst vevlinaspa rltilpisrd tiksyc
//
LOCUS       XP_053911369            1066 aa            linear   VRT 09-MAR-2023
DEFINITION  IQ motif and SEC7 domain-containing protein 3 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053911369
VERSION     XP_053911369.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055394.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1066
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1066
                     /product="IQ motif and SEC7 domain-containing protein 3
                     isoform X1"
                     /calculated_mol_wt=117418
     Region          657..845
                     /region_name="Sec7"
                     /note="Sec7 domain; pfam01369"
                     /db_xref="CDD:460178"
     Region          867..996
                     /region_name="IQ_SEC7_PH"
                     /note="PH domain; pfam16453"
                     /db_xref="CDD:465120"
     CDS             1..1066
                     /gene="IQSEC3"
                     /coded_by="XM_054055394.1:153..3353"
                     /db_xref="GeneID:104056357"
ORIGIN      
        1 mesllenpvr avlylkelta ivqnqqslih tqrqridele rrldelsten rnlrgqqqqq
       61 qpplaepsaa apappeqppp ppgqpdslqh hqqlpaqqpq pqpgqpdslq hhqqlppqpp
      121 pgkqagagpg gggraaghqh pavqphqhpa erdgrdkgcc aallqhktpq aigkgvlsrr
      181 penetvlhqf ccpaadaeqk pssadsspsd dpsdstskka gcetedpkea grqsgqegrs
      241 etltlkaqha elqeeqaagc splvqkaslh htgspvrvqr skgtascsha aasdyelsld
      301 lknkqiemle hkygghlvsr raactiqtaf rqyqlsknfe kirnsllesr mprrislrkv
      361 rvqnsesfsa ekalvegynf vgiplvrsps lpatisgalt eledsfteqv qslaksidda
      421 lstwslktmc slqdggsyqi retfsassmq pnqeleaelq dkekeegllp dtlpkssstl
      481 mmafrdvtvq idnknisvss stsvsmancl snnaqaglaq atkaeespge gegeaseppa
      541 apeslpesra aqnshtftev nvstngteds saepeqmavq klqfdatnet gqskgsesen
      601 adnseqlsss ststsaksas evsskealqa milslpryhc enpasckspt lstdtmrkrl
      661 yriglnlfni npdkgiqfli srgfipdtpi gvahfllqrk glsrqmigef lgnskkqfnr
      721 dvldcvvdem dfsgmeldea lrkfqahirv qgeaqkverl ieafsqrycm cnpdvvqqfh
      781 npdtifilaf aiillntdmy spnikpdrkm mledfirnlr gvddgadipr elvvgiyeri
      841 qqkelksned hvtyvtkvek sivgmktvls vphrrlvccs rlyevtdvnk vqkqaahqre
      901 vflfndllvi lklcpkkkss stytfcksvg llgmqfhlfe neyyphgitl vtpvsgsekk
      961 qvlhfcalga eemqkfvedl kesiaevtel eqiriewele kqqgakslsl rtngaqmelq
     1021 skqgsptgkk dlgekvsdst vevlinaspa rltilpisrd tiksyc
//
LOCUS       XP_053911372            1064 aa            linear   VRT 09-MAR-2023
DEFINITION  IQ motif and SEC7 domain-containing protein 3 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053911372
VERSION     XP_053911372.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055397.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1064
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1064
                     /product="IQ motif and SEC7 domain-containing protein 3
                     isoform X2"
                     /calculated_mol_wt=117104
     Region          657..845
                     /region_name="Sec7"
                     /note="Sec7 domain; pfam01369"
                     /db_xref="CDD:460178"
     Region          867..996
                     /region_name="IQ_SEC7_PH"
                     /note="PH domain; pfam16453"
                     /db_xref="CDD:465120"
     CDS             1..1064
                     /gene="IQSEC3"
                     /coded_by="XM_054055397.1:153..3347"
                     /db_xref="GeneID:104056357"
ORIGIN      
        1 mesllenpvr avlylkelta ivqnqqslih tqrqridele rrldelsten rnlrgqqqqq
       61 qpplaepsaa apappeqppp ppgqpdslqh hqqlpaqqpq pqpgqpdslq hhqqlppqpp
      121 pgkqagagpg gggraaghqh pavqphqhpa erdgrdkgcc aallqhktpq aigkgvlsrr
      181 penetvlhqf ccpaadaeqk pssadsspsd dpsdstskka gcetedpkea grqsgqegrs
      241 etltlkaqha elqeeqaagc splvqkaslh htgspvrvqr skgtascsha aasdyelsld
      301 lknkqiemle hkygghlvsr raactiqtaf rqyqlsknfe kirnsllesr mprrislrkv
      361 rvqnsesfsa ekalvegynf vgiplvrsps lpatisgalt eledsfteqv qslaksidda
      421 lstwslktmc slqdggsyqi retfsassmq pnqeleaelq dkekeegllp dtlpkssstl
      481 mmafrdvtvq idnknisvss stsvsmancl snnaqaglaq atkaeespge gegeaseppa
      541 apeslpesra aqnshtftev nvstngteds saepeqmavq klqfdatnet gqskgsesen
      601 adnseqlsss ststsaksas evsskealqa milslpryhc enpasckspt lstdtmrkrl
      661 yriglnlfni npdkgiqfli srgfipdtpi gvahfllqrk glsrqmigef lgnskkqfnr
      721 dvldcvvdem dfsgmeldea lrkfqahirv qgeaqkverl ieafsqrycm cnpdvvqqfh
      781 npdtifilaf aiillntdmy spnikpdrkm mledfirnlr gvddgadipr elvvgiyeri
      841 qqkelksned hvtyvtkvek sivgmktvls vphrrlvccs rlyevtdvnk vqkqaahqre
      901 vflfndllvi lklcpkkkss stytfcksvg llgmqfhlfe neyyphgitl vtpvsgsekk
      961 qvlhfcalga eemqkfvedl kesiaevtel eqiriewele kqqgakslsl rtngaqmelq
     1021 skqgsptgkk dlgekvsdst veasnvpaql rpgarewnaa qhas
//
LOCUS       XP_053911380            1187 aa            linear   VRT 09-MAR-2023
DEFINITION  IQ motif and SEC7 domain-containing protein 3 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053911380
VERSION     XP_053911380.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055405.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1187
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1187
                     /product="IQ motif and SEC7 domain-containing protein 3
                     isoform X3"
                     /calculated_mol_wt=130786
     Region          657..845
                     /region_name="Sec7"
                     /note="Sec7 domain; pfam01369"
                     /db_xref="CDD:460178"
     Region          867..996
                     /region_name="IQ_SEC7_PH"
                     /note="PH domain; pfam16453"
                     /db_xref="CDD:465120"
     CDS             1..1187
                     /gene="IQSEC3"
                     /coded_by="XM_054055405.1:177..3740"
                     /db_xref="GeneID:104056357"
ORIGIN      
        1 mesllenpvr avlylkelta ivqnqqslih tqrqridele rrldelsten rnlrgqqqqq
       61 qpplaepsaa apappeqppp ppgqpdslqh hqqlpaqqpq pqpgqpdslq hhqqlppqpp
      121 pgkqagagpg gggraaghqh pavqphqhpa erdgrdkgcc aallqhktpq aigkgvlsrr
      181 penetvlhqf ccpaadaeqk pssadsspsd dpsdstskka gcetedpkea grqsgqegrs
      241 etltlkaqha elqeeqaagc splvqkaslh htgspvrvqr skgtascsha aasdyelsld
      301 lknkqiemle hkygghlvsr raactiqtaf rqyqlsknfe kirnsllesr mprrislrkv
      361 rvqnsesfsa ekalvegynf vgiplvrsps lpatisgalt eledsfteqv qslaksidda
      421 lstwslktmc slqdggsyqi retfsassmq pnqeleaelq dkekeegllp dtlpkssstl
      481 mmafrdvtvq idnknisvss stsvsmancl snnaqaglaq atkaeespge gegeaseppa
      541 apeslpesra aqnshtftev nvstngteds saepeqmavq klqfdatnet gqskgsesen
      601 adnseqlsss ststsaksas evsskealqa milslpryhc enpasckspt lstdtmrkrl
      661 yriglnlfni npdkgiqfli srgfipdtpi gvahfllqrk glsrqmigef lgnskkqfnr
      721 dvldcvvdem dfsgmeldea lrkfqahirv qgeaqkverl ieafsqrycm cnpdvvqqfh
      781 npdtifilaf aiillntdmy spnikpdrkm mledfirnlr gvddgadipr elvvgiyeri
      841 qqkelksned hvtyvtkvek sivgmktvls vphrrlvccs rlyevtdvnk vqkqaahqre
      901 vflfndllvi lklcpkkkss stytfcksvg llgmqfhlfe neyyphgitl vtpvsgsekk
      961 qvlhfcalga eemqkfvedl kesiaevtel eqiriewele kqqgakslsl rtngaqmelq
     1021 skqgsptgkk dlgekvsdst vevsihnrlq tyqhnsalgp esgmqpsmrl nmprerleta
     1081 lvpshpasag tlvqcqqivk vivldkpcla rmepalnqtl tryvtsdsct stpwrgvgsg
     1141 fpgtpmklvh qpplpppppp ynhphqycpp ssllqrrrys sgsrslv
//
LOCUS       XP_053911389             880 aa            linear   VRT 09-MAR-2023
DEFINITION  IQ motif and SEC7 domain-containing protein 3 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053911389
VERSION     XP_053911389.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055414.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..880
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..880
                     /product="IQ motif and SEC7 domain-containing protein 3
                     isoform X4"
                     /calculated_mol_wt=97761
     Region          350..538
                     /region_name="Sec7"
                     /note="Sec7 domain; pfam01369"
                     /db_xref="CDD:460178"
     Region          560..689
                     /region_name="IQ_SEC7_PH"
                     /note="PH domain; pfam16453"
                     /db_xref="CDD:465120"
     CDS             1..880
                     /gene="IQSEC3"
                     /coded_by="XM_054055414.1:149..2791"
                     /db_xref="GeneID:104056357"
ORIGIN      
        1 mlehkygghl vsrraactiq tafrqyqlsk nfekirnsll esrmprrisl rkvrvqnses
       61 fsaekalveg ynfvgiplvr spslpatisg alteledsft eqvqslaksi ddalstwslk
      121 tmcslqdggs yqiretfsas smqpnqelea elqdkekeeg llpdtlpkss stlmmafrdv
      181 tvqidnknis vssstsvsma nclsnnaqag laqatkaees pgegegease ppaapeslpe
      241 sraaqnshtf tevnvstngt edssaepeqm avqklqfdat netgqskgse senadnseql
      301 sssststsak sasevsskea lqamilslpr yhcenpasck sptlstdtmr krlyriglnl
      361 fninpdkgiq flisrgfipd tpigvahfll qrkglsrqmi geflgnskkq fnrdvldcvv
      421 demdfsgmel dealrkfqah irvqgeaqkv erlieafsqr ycmcnpdvvq qfhnpdtifi
      481 lafaiillnt dmyspnikpd rkmmledfir nlrgvddgad iprelvvgiy eriqqkelks
      541 nedhvtyvtk veksivgmkt vlsvphrrlv ccsrlyevtd vnkvqkqaah qrevflfndl
      601 lvilklcpkk kssstytfck svgllgmqfh lfeneyyphg itlvtpvsgs ekkqvlhfca
      661 lgaeemqkfv edlkesiaev teleqiriew elekqqgaks lslrtngaqm elqskqgspt
      721 gkkdlgekvs dstvevsihn rlqtyqhnsa lgpesgmqps mrlnmprerl etalvpshpa
      781 sagtlvqcqq ivkvivldkp clarmepaln qtltryvtsd sctstpwrgv gsgfpgtpmk
      841 lvhqpplppp pppynhphqy cppssllqrr ryssgsrslv
//
LOCUS       XP_053911404             567 aa            linear   VRT 09-MAR-2023
DEFINITION  interferon alpha/beta receptor 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911404
VERSION     XP_053911404.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055429.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..567
                     /product="interferon alpha/beta receptor 1 isoform X1"
                     /calculated_mol_wt=64210
     Region          9..121
                     /region_name="Tissue_fac"
                     /note="Tissue factor; pfam01108"
                     /db_xref="CDD:460067"
     Region          133..231
                     /region_name="Interfer-bind"
                     /note="Interferon-alpha/beta receptor, fibronectin type
                     III; pfam09294"
                     /db_xref="CDD:462746"
     Region          236..318
                     /region_name="Tissue_fac"
                     /note="Tissue factor; pfam01108"
                     /db_xref="CDD:460067"
     Region          340..439
                     /region_name="Interfer-bind"
                     /note="Interferon-alpha/beta receptor, fibronectin type
                     III; pfam09294"
                     /db_xref="CDD:462746"
     CDS             1..567
                     /gene="IFNAR1"
                     /coded_by="XM_054055429.1:52..1755"
                     /db_xref="GeneID:104064790"
ORIGIN      
        1 mgraaavcll cvlcvfcila glpgsyagqt nlkspqdiqv yavntnftlr wnytgndtdv
       61 tfsaeyrwfe dfepsetewk elrgcqnvth tecdfssait kyddihhlri rakrreevsp
      121 wssifemipc fiaqigppgi elqstngvik ikvsspeanq dqkmwindli fnynlviwen
      181 ssnaefrsqr ivpvqiiddl apdttyclkv qaiiplesqg lfspthcikt trkvndllca
      241 tnlrvfalnm efhlhwnnqy kqhvsynvqy lfaylkmlyd dhsvkwlnvp gcenitdtqc
      301 nfssvitavs iiylrvqamg eynksclske ikvdplitne igppsikldi sdallhiqis
      361 ppgsqgevmr qhydlsyrvl ywknsshnae giqmketkqt igtvpnltsl tlycvkvqaf
      421 skaynksspf skeeciktpg dkilplivla tfvtalvvvl lvaallsfal yqaynkikyv
      481 ffpscqppln iegfgeqvfi spylstteeq iencfiietn iteevnqidf kdykhskqss
      541 rdsgnysndd nnsgnkvsee tlekgtv
//
LOCUS       XP_053911411             558 aa            linear   VRT 09-MAR-2023
DEFINITION  interferon alpha/beta receptor 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053911411
VERSION     XP_053911411.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055436.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..558
                     /product="interferon alpha/beta receptor 1 isoform X2"
                     /calculated_mol_wt=63205
     Region          9..121
                     /region_name="Tissue_fac"
                     /note="Tissue factor; pfam01108"
                     /db_xref="CDD:460067"
     Region          133..231
                     /region_name="Interfer-bind"
                     /note="Interferon-alpha/beta receptor, fibronectin type
                     III; pfam09294"
                     /db_xref="CDD:462746"
     Region          236..318
                     /region_name="Tissue_fac"
                     /note="Tissue factor; pfam01108"
                     /db_xref="CDD:460067"
     Region          340..439
                     /region_name="Interfer-bind"
                     /note="Interferon-alpha/beta receptor, fibronectin type
                     III; pfam09294"
                     /db_xref="CDD:462746"
     CDS             1..558
                     /gene="IFNAR1"
                     /coded_by="XM_054055436.1:52..1728"
                     /db_xref="GeneID:104064790"
ORIGIN      
        1 mgraaavcll cvlcvfcila glpgsyagqt nlkspqdiqv yavntnftlr wnytgndtdv
       61 tfsaeyrwfe dfepsetewk elrgcqnvth tecdfssait kyddihhlri rakrreevsp
      121 wssifemipc fiaqigppgi elqstngvik ikvsspeanq dqkmwindli fnynlviwen
      181 ssnaefrsqr ivpvqiiddl apdttyclkv qaiiplesqg lfspthcikt trkvndllca
      241 tnlrvfalnm efhlhwnnqy kqhvsynvqy lfaylkmlyd dhsvkwlnvp gcenitdtqc
      301 nfssvitavs iiylrvqamg eynksclske ikvdplitne igppsikldi sdallhiqis
      361 ppgsqgevmr qhydlsyrvl ywknsshnae giqmketkqt igtvpnltsl tlycvkvqaf
      421 skaynksspf skeeciktpg atfvtalvvv llvaallsfa lyqaynkiky vffpscqppl
      481 niegfgeqvf ispylsttee qiencfiiet niteevnqid fkdykhskqs srdsgnysnd
      541 dnnsgnkvse etlekgtv
//
LOCUS       XP_053911415             461 aa            linear   VRT 09-MAR-2023
DEFINITION  interferon alpha/beta receptor 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053911415
VERSION     XP_053911415.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055440.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..461
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..461
                     /product="interferon alpha/beta receptor 1 isoform X3"
                     /calculated_mol_wt=52465
     Region          9..121
                     /region_name="Tissue_fac"
                     /note="Tissue factor; pfam01108"
                     /db_xref="CDD:460067"
     Region          133..231
                     /region_name="Interfer-bind"
                     /note="Interferon-alpha/beta receptor, fibronectin type
                     III; pfam09294"
                     /db_xref="CDD:462746"
     Region          236..318
                     /region_name="Tissue_fac"
                     /note="Tissue factor; pfam01108"
                     /db_xref="CDD:460067"
     Region          340..439
                     /region_name="Interfer-bind"
                     /note="Interferon-alpha/beta receptor, fibronectin type
                     III; pfam09294"
                     /db_xref="CDD:462746"
     CDS             1..461
                     /gene="IFNAR1"
                     /coded_by="XM_054055440.1:52..1437"
                     /db_xref="GeneID:104064790"
ORIGIN      
        1 mgraaavcll cvlcvfcila glpgsyagqt nlkspqdiqv yavntnftlr wnytgndtdv
       61 tfsaeyrwfe dfepsetewk elrgcqnvth tecdfssait kyddihhlri rakrreevsp
      121 wssifemipc fiaqigppgi elqstngvik ikvsspeanq dqkmwindli fnynlviwen
      181 ssnaefrsqr ivpvqiiddl apdttyclkv qaiiplesqg lfspthcikt trkvndllca
      241 tnlrvfalnm efhlhwnnqy kqhvsynvqy lfaylkmlyd dhsvkwlnvp gcenitdtqc
      301 nfssvitavs iiylrvqamg eynksclske ikvdplitne igppsikldi sdallhiqis
      361 ppgsqgevmr qhydlsyrvl ywknsshnae giqmketkqt igtvpnltsl tlycvkvqaf
      421 skaynksspf skeeciktpg asfehrgfwr tglyqslsvn y
//
LOCUS       XP_053911419             277 aa            linear   VRT 09-MAR-2023
DEFINITION  protein CREG2 [Cuculus canorus].
ACCESSION   XP_053911419
VERSION     XP_053911419.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055444.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..277
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..277
                     /product="protein CREG2"
                     /calculated_mol_wt=30504
     Region          110..271
                     /region_name="Pyrid_oxidase_2"
                     /note="Pyridoxamine 5'-phosphate oxidase; pfam13883"
                     /db_xref="CDD:404723"
     CDS             1..277
                     /gene="CREG2"
                     /coded_by="XM_054055444.1:180..1013"
                     /db_xref="GeneID:104056693"
ORIGIN      
        1 msprrwlrac wwlpallcgg aagyvvvssv swplpeegap adelhssste ealpalleep
       61 gglwkrsypa spyredaals svpaarragm rdapsrmfsy pregvgapgs agtarylary
      121 ntwgfvatra aqgkiqgmpy gnclllsdgp vnnstgipff yvtpkdntvv dllknsvasv
      181 tlpeadgnfc rknlidpedp rcarltlmgq mvtvppeeve fakqamfsrh pvvrkwprsy
      241 ewffmkmnie hvwlqswyge vsaiaveeyl kavpskg
//
LOCUS       XP_053911431             285 aa            linear   VRT 09-MAR-2023
DEFINITION  proteasome assembly chaperone 1 [Cuculus canorus].
ACCESSION   XP_053911431
VERSION     XP_053911431.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055456.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..285
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..285
                     /product="proteasome assembly chaperone 1"
                     /calculated_mol_wt=32239
     Region          1..285
                     /region_name="PAC1"
                     /note="Proteasome assembly chaperone 4; pfam16094"
                     /db_xref="CDD:465018"
     CDS             1..285
                     /gene="PSMG1"
                     /coded_by="XM_054055456.1:26..883"
                     /db_xref="GeneID:104059258"
ORIGIN      
        1 matffgevvv apsragvdde eewveetped reirrelekk reinvlwtlk pgapvedyag
       61 etfvcskfiv aighnaaafl scfildsvcw evvgvlklwn ewcrttnttn vlptdsfclf
      121 yrlisdptvl lcqcscyvae dqqfqwlekv fgsmrkeglq vtilstcpva dyktqestlt
      181 lpspflkalk tkefkepvcc plleqpnivr dlpaavlsyc qvwqipavly qcytdvikld
      241 tvtieafkpl isskilkslv kdvsestknl kkllttneth nniyi
//
LOCUS       XP_053911440             457 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal-specific septin-3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911440
VERSION     XP_053911440.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055465.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..457
                     /product="neuronal-specific septin-3 isoform X1"
                     /calculated_mol_wt=50911
     Region          <3..138
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          166..440
                     /region_name="CDC_Septin"
                     /note="CDC/Septin GTPase family; cd01850"
                     /db_xref="CDD:206649"
     Site            175..182
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206649"
     Site            order(177..183,232,235,314..315,317,372..373)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206649"
     Site            207..215
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206649"
     Site            209
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206649"
     Site            232..235
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206649"
     Site            234..280
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206649"
     Site            314..317
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206649"
     Site            372..374
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206649"
     CDS             1..457
                     /gene="SEPTIN3"
                     /coded_by="XM_054055465.1:1..1374"
                     /db_xref="GeneID:104055487"
ORIGIN      
        1 meedvaphrs rlptpagpsr ipappprrds llgtpapstk wsclsvtlrr aggsgrgtpw
       61 erlrgpapit svpprprpvv aegpqrcgss ggaeaavaak mgvsssppcs gpveskneaa
      121 mselvpetrq kpavpmkpmg inanllgyig idtiieqmrk ktmktgfdfn imvvgqsglg
      181 kstlvntlfk sqvsrkssgw nreekipktv eikaighvie eggvkmkltv idtpgfgdqi
      241 nnencwepie kyineqyekf lkeevniark kripdtrvhc clyfisptgh slrpldlefm
      301 khlskvvnii pviakadtmt leektefkqr vrkelevngi efypqkefde dledktendk
      361 irqesmpfav vgsdkeyqvn gkrvlgrktp wgiievenlt hcefallrdf virthlqdlk
      421 evthnihyet yrakrlndng glppmavete ennesnl
//
LOCUS       XP_053911446             336 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal-specific septin-3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053911446
VERSION     XP_053911446.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055471.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..336
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..336
                     /product="neuronal-specific septin-3 isoform X2"
                     /calculated_mol_wt=38522
     Region          46..319
                     /region_name="CDC_Septin"
                     /note="CDC/Septin GTPase family; cd01850"
                     /db_xref="CDD:206649"
     Site            55..62
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206649"
     Site            order(57..63,112,115,194..195,197,251..252)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206649"
     Site            87..95
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206649"
     Site            89
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206649"
     Site            112..115
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206649"
     Site            114..160
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206649"
     Site            194..197
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206649"
     Site            251..253
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206649"
     CDS             1..336
                     /gene="SEPTIN3"
                     /coded_by="XM_054055471.1:30..1040"
                     /db_xref="GeneID:104055487"
ORIGIN      
        1 mselvpetrq kpavpmkpmg inanllgyig idtiieqmrk ktmktgfdfn imvvgqsglg
       61 kstlvntlfk sqvsrkssgw nreekipktv eikaighvie eggvkmkltv idtpgfgdqi
      121 nnencwepie kyineqyekf lkeevniark kripdtrvhc clyfisptgh slrpldlefm
      181 khlskvvnii pviakadtmt leektefkqr vrkelevngi efypqkefde dledktendk
      241 iresmpfavv gsdkeyqvng krvlgrktpw giievenlth cefallrdfv irthlqdlke
      301 vthnihyety rakrlndngg lppmavetee nnesnl
//
LOCUS       XP_009554907             350 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal-specific septin-3 isoform X3 [Cuculus canorus].
ACCESSION   XP_009554907
VERSION     XP_009554907.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556612.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..350
                     /product="neuronal-specific septin-3 isoform X3"
                     /calculated_mol_wt=40040
     Region          59..333
                     /region_name="CDC_Septin"
                     /note="CDC/Septin GTPase family; cd01850"
                     /db_xref="CDD:206649"
     Site            68..75
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206649"
     Site            order(70..76,125,128,207..208,210,265..266)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206649"
     Site            100..108
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206649"
     Site            102
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206649"
     Site            125..128
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206649"
     Site            127..173
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206649"
     Site            207..210
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206649"
     Site            265..267
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206649"
     CDS             1..350
                     /gene="SEPTIN3"
                     /coded_by="XM_009556612.2:225..1277"
                     /db_xref="GeneID:104055487"
ORIGIN      
        1 mfkgpveskn eaamselvpe trqkpavpmk pmginanllg yigidtiieq mrkktmktgf
       61 dfnimvvgqs glgkstlvnt lfksqvsrks sgwnreekip ktveikaigh vieeggvkmk
      121 ltvidtpgfg dqinnencwe piekyineqy ekflkeevni arkkripdtr vhcclyfisp
      181 tghslrpldl efmkhlskvv niipviakad tmtleektef kqrvrkelev ngiefypqke
      241 fdedledkte ndkirqesmp favvgsdkey qvngkrvlgr ktpwgiieve nlthcefall
      301 rdfvirthlq dlkevthnih yetyrakrln dngglppmav eteennesnl
//
LOCUS       XP_053911461             337 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal-specific septin-3 isoform X4 [Cuculus canorus].
ACCESSION   XP_053911461
VERSION     XP_053911461.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055486.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..337
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..337
                     /product="neuronal-specific septin-3 isoform X4"
                     /calculated_mol_wt=38651
     Region          46..320
                     /region_name="CDC_Septin"
                     /note="CDC/Septin GTPase family; cd01850"
                     /db_xref="CDD:206649"
     Site            55..62
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206649"
     Site            order(57..63,112,115,194..195,197,252..253)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206649"
     Site            87..95
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206649"
     Site            89
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206649"
     Site            112..115
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206649"
     Site            114..160
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206649"
     Site            194..197
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206649"
     Site            252..254
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206649"
     CDS             1..337
                     /gene="SEPTIN3"
                     /coded_by="XM_054055486.1:452..1465"
                     /db_xref="GeneID:104055487"
ORIGIN      
        1 mselvpetrq kpavpmkpmg inanllgyig idtiieqmrk ktmktgfdfn imvvgqsglg
       61 kstlvntlfk sqvsrkssgw nreekipktv eikaighvie eggvkmkltv idtpgfgdqi
      121 nnencwepie kyineqyekf lkeevniark kripdtrvhc clyfisptgh slrpldlefm
      181 khlskvvnii pviakadtmt leektefkqr vrkelevngi efypqkefde dledktendk
      241 irqesmpfav vgsdkeyqvn gkrvlgrktp wgiievenlt hcefallrdf virthlqdlk
      301 evthnihyet yrakrlndng glppmavete ennesnl
//
LOCUS       XP_053911467             391 aa            linear   VRT 09-MAR-2023
DEFINITION  neuronal-specific septin-3 isoform X5 [Cuculus canorus].
ACCESSION   XP_053911467
VERSION     XP_053911467.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055492.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..391
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..391
                     /product="neuronal-specific septin-3 isoform X5"
                     /calculated_mol_wt=44512
     Region          46..320
                     /region_name="CDC_Septin"
                     /note="CDC/Septin GTPase family; cd01850"
                     /db_xref="CDD:206649"
     Site            55..62
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206649"
     Site            order(57..63,112,115,194..195,197,252..253)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206649"
     Site            87..95
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206649"
     Site            89
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206649"
     Site            112..115
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206649"
     Site            114..160
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206649"
     Site            194..197
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206649"
     Site            252..254
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206649"
     CDS             1..391
                     /gene="SEPTIN3"
                     /coded_by="XM_054055492.1:30..1205"
                     /db_xref="GeneID:104055487"
ORIGIN      
        1 mselvpetrq kpavpmkpmg inanllgyig idtiieqmrk ktmktgfdfn imvvgqsglg
       61 kstlvntlfk sqvsrkssgw nreekipktv eikaighvie eggvkmkltv idtpgfgdqi
      121 nnencwepie kyineqyekf lkeevniark kripdtrvhc clyfisptgh slrpldlefm
      181 khlskvvnii pviakadtmt leektefkqr vrkelevngi efypqkefde dledktendk
      241 irqesmpfav vgsdkeyqvn gkrvlgrktp wgiievenlt hcefallrdf virthlqdlk
      301 evthnihyet yrakrlndng glppmavete ennesnlwtl evgavflfls lgdmarrdsr
      361 emvesvhavs ssdgssdvcg vfsgwegnwl v
//
LOCUS       XP_053911480             604 aa            linear   VRT 09-MAR-2023
DEFINITION  kelch-like protein 15 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911480
VERSION     XP_053911480.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055505.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..604
                     /product="kelch-like protein 15 isoform X1"
                     /calculated_mol_wt=69583
     Region          1..137
                     /region_name="BTB_POZ_KLHL15"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in Kelch-like
                     protein 15 (KLHL15); cd18244"
                     /db_xref="CDD:349553"
     Region          33..590
                     /region_name="PHA03098"
                     /note="kelch-like protein; Provisional"
                     /db_xref="CDD:222983"
     Region          128..235
                     /region_name="BACK_KLHL15"
                     /note="BACK (BTB and C-terminal Kelch) domain found in
                     Kelch-like protein 15 (KLHL15); cd18454"
                     /db_xref="CDD:350529"
     Region          321..365
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          369..412
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          417..474
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          478..529
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          532..572
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..604
                     /gene="KLHL15"
                     /coded_by="XM_054055505.1:1257..3071"
                     /db_xref="GeneID:104059413"
ORIGIN      
        1 magdvegfss sihdtsvsag fralyeegll ldvtlviedh qfqahkalla tqsdyfrimf
       61 tadmrerdqd kihlkgltat gfshvlqfmy ygtielsmnt vheilqaamy vqlievvkfc
      121 csfllakicl encaeimrll ddfgvniegv rekldsflle nfvplmsrpd flsylsfekl
      181 msyldndhls rfpeielyea vqawlrhdrr rwrhtdtiiq nirfclmtps svfekvktse
      241 fyrysrqlrh evdqamnyfh svhqqplmem ksnkirsakp qtavfrgmig hsmvnskill
      301 lhkprvwwel egpqvplrpd claivnnfvf llggeelgpd gefhasskvf rydprqntwl
      361 rmadmsvprs efavgvigry vyavagrtrd etfysteryd itedkwefvd pypvnkyghe
      421 gtvlgnklyi tggitsssts kqvcvfdpsk egtveqrtrr tqvvtncwen kckmnyarcf
      481 hkmisyngkl yvfggvcvil rasfesqgcp stevydpdtd qwtilasmpi grsghgvavl
      541 dkqimvlggl cynghysdsi ltfdpeenkw kedeyprmpc kldglqvcsl hfpeyvlehv
      601 rrcs
//
LOCUS       XP_053911488             604 aa            linear   VRT 09-MAR-2023
DEFINITION  kelch-like protein 15 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911488
VERSION     XP_053911488.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055513.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..604
                     /product="kelch-like protein 15 isoform X1"
                     /calculated_mol_wt=69583
     Region          1..137
                     /region_name="BTB_POZ_KLHL15"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in Kelch-like
                     protein 15 (KLHL15); cd18244"
                     /db_xref="CDD:349553"
     Region          33..590
                     /region_name="PHA03098"
                     /note="kelch-like protein; Provisional"
                     /db_xref="CDD:222983"
     Region          128..235
                     /region_name="BACK_KLHL15"
                     /note="BACK (BTB and C-terminal Kelch) domain found in
                     Kelch-like protein 15 (KLHL15); cd18454"
                     /db_xref="CDD:350529"
     Region          321..365
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          369..412
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          417..474
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          478..529
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          532..572
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..604
                     /gene="KLHL15"
                     /coded_by="XM_054055513.1:256..2070"
                     /db_xref="GeneID:104059413"
ORIGIN      
        1 magdvegfss sihdtsvsag fralyeegll ldvtlviedh qfqahkalla tqsdyfrimf
       61 tadmrerdqd kihlkgltat gfshvlqfmy ygtielsmnt vheilqaamy vqlievvkfc
      121 csfllakicl encaeimrll ddfgvniegv rekldsflle nfvplmsrpd flsylsfekl
      181 msyldndhls rfpeielyea vqawlrhdrr rwrhtdtiiq nirfclmtps svfekvktse
      241 fyrysrqlrh evdqamnyfh svhqqplmem ksnkirsakp qtavfrgmig hsmvnskill
      301 lhkprvwwel egpqvplrpd claivnnfvf llggeelgpd gefhasskvf rydprqntwl
      361 rmadmsvprs efavgvigry vyavagrtrd etfysteryd itedkwefvd pypvnkyghe
      421 gtvlgnklyi tggitsssts kqvcvfdpsk egtveqrtrr tqvvtncwen kckmnyarcf
      481 hkmisyngkl yvfggvcvil rasfesqgcp stevydpdtd qwtilasmpi grsghgvavl
      541 dkqimvlggl cynghysdsi ltfdpeenkw kedeyprmpc kldglqvcsl hfpeyvlehv
      601 rrcs
//
LOCUS       XP_053911495             604 aa            linear   VRT 09-MAR-2023
DEFINITION  kelch-like protein 15 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911495
VERSION     XP_053911495.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055520.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..604
                     /product="kelch-like protein 15 isoform X1"
                     /calculated_mol_wt=69583
     Region          1..137
                     /region_name="BTB_POZ_KLHL15"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in Kelch-like
                     protein 15 (KLHL15); cd18244"
                     /db_xref="CDD:349553"
     Region          33..590
                     /region_name="PHA03098"
                     /note="kelch-like protein; Provisional"
                     /db_xref="CDD:222983"
     Region          128..235
                     /region_name="BACK_KLHL15"
                     /note="BACK (BTB and C-terminal Kelch) domain found in
                     Kelch-like protein 15 (KLHL15); cd18454"
                     /db_xref="CDD:350529"
     Region          321..365
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          369..412
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          417..474
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          478..529
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          532..572
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..604
                     /gene="KLHL15"
                     /coded_by="XM_054055520.1:1368..3182"
                     /db_xref="GeneID:104059413"
ORIGIN      
        1 magdvegfss sihdtsvsag fralyeegll ldvtlviedh qfqahkalla tqsdyfrimf
       61 tadmrerdqd kihlkgltat gfshvlqfmy ygtielsmnt vheilqaamy vqlievvkfc
      121 csfllakicl encaeimrll ddfgvniegv rekldsflle nfvplmsrpd flsylsfekl
      181 msyldndhls rfpeielyea vqawlrhdrr rwrhtdtiiq nirfclmtps svfekvktse
      241 fyrysrqlrh evdqamnyfh svhqqplmem ksnkirsakp qtavfrgmig hsmvnskill
      301 lhkprvwwel egpqvplrpd claivnnfvf llggeelgpd gefhasskvf rydprqntwl
      361 rmadmsvprs efavgvigry vyavagrtrd etfysteryd itedkwefvd pypvnkyghe
      421 gtvlgnklyi tggitsssts kqvcvfdpsk egtveqrtrr tqvvtncwen kckmnyarcf
      481 hkmisyngkl yvfggvcvil rasfesqgcp stevydpdtd qwtilasmpi grsghgvavl
      541 dkqimvlggl cynghysdsi ltfdpeenkw kedeyprmpc kldglqvcsl hfpeyvlehv
      601 rrcs
//
LOCUS       XP_009559379             604 aa            linear   VRT 09-MAR-2023
DEFINITION  kelch-like protein 15 isoform X1 [Cuculus canorus].
ACCESSION   XP_009559379
VERSION     XP_009559379.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009561084.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..604
                     /product="kelch-like protein 15 isoform X1"
                     /calculated_mol_wt=69583
     Region          1..137
                     /region_name="BTB_POZ_KLHL15"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in Kelch-like
                     protein 15 (KLHL15); cd18244"
                     /db_xref="CDD:349553"
     Region          33..590
                     /region_name="PHA03098"
                     /note="kelch-like protein; Provisional"
                     /db_xref="CDD:222983"
     Region          128..235
                     /region_name="BACK_KLHL15"
                     /note="BACK (BTB and C-terminal Kelch) domain found in
                     Kelch-like protein 15 (KLHL15); cd18454"
                     /db_xref="CDD:350529"
     Region          321..365
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          369..412
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          417..474
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          478..529
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          532..572
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..604
                     /gene="KLHL15"
                     /coded_by="XM_009561084.2:415..2229"
                     /db_xref="GeneID:104059413"
ORIGIN      
        1 magdvegfss sihdtsvsag fralyeegll ldvtlviedh qfqahkalla tqsdyfrimf
       61 tadmrerdqd kihlkgltat gfshvlqfmy ygtielsmnt vheilqaamy vqlievvkfc
      121 csfllakicl encaeimrll ddfgvniegv rekldsflle nfvplmsrpd flsylsfekl
      181 msyldndhls rfpeielyea vqawlrhdrr rwrhtdtiiq nirfclmtps svfekvktse
      241 fyrysrqlrh evdqamnyfh svhqqplmem ksnkirsakp qtavfrgmig hsmvnskill
      301 lhkprvwwel egpqvplrpd claivnnfvf llggeelgpd gefhasskvf rydprqntwl
      361 rmadmsvprs efavgvigry vyavagrtrd etfysteryd itedkwefvd pypvnkyghe
      421 gtvlgnklyi tggitsssts kqvcvfdpsk egtveqrtrr tqvvtncwen kckmnyarcf
      481 hkmisyngkl yvfggvcvil rasfesqgcp stevydpdtd qwtilasmpi grsghgvavl
      541 dkqimvlggl cynghysdsi ltfdpeenkw kedeyprmpc kldglqvcsl hfpeyvlehv
      601 rrcs
//
LOCUS       XP_053911498             604 aa            linear   VRT 09-MAR-2023
DEFINITION  kelch-like protein 15 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911498
VERSION     XP_053911498.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055523.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..604
                     /product="kelch-like protein 15 isoform X1"
                     /calculated_mol_wt=69583
     Region          1..137
                     /region_name="BTB_POZ_KLHL15"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in Kelch-like
                     protein 15 (KLHL15); cd18244"
                     /db_xref="CDD:349553"
     Region          33..590
                     /region_name="PHA03098"
                     /note="kelch-like protein; Provisional"
                     /db_xref="CDD:222983"
     Region          128..235
                     /region_name="BACK_KLHL15"
                     /note="BACK (BTB and C-terminal Kelch) domain found in
                     Kelch-like protein 15 (KLHL15); cd18454"
                     /db_xref="CDD:350529"
     Region          321..365
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          369..412
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          417..474
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          478..529
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          532..572
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..604
                     /gene="KLHL15"
                     /coded_by="XM_054055523.1:144..1958"
                     /db_xref="GeneID:104059413"
ORIGIN      
        1 magdvegfss sihdtsvsag fralyeegll ldvtlviedh qfqahkalla tqsdyfrimf
       61 tadmrerdqd kihlkgltat gfshvlqfmy ygtielsmnt vheilqaamy vqlievvkfc
      121 csfllakicl encaeimrll ddfgvniegv rekldsflle nfvplmsrpd flsylsfekl
      181 msyldndhls rfpeielyea vqawlrhdrr rwrhtdtiiq nirfclmtps svfekvktse
      241 fyrysrqlrh evdqamnyfh svhqqplmem ksnkirsakp qtavfrgmig hsmvnskill
      301 lhkprvwwel egpqvplrpd claivnnfvf llggeelgpd gefhasskvf rydprqntwl
      361 rmadmsvprs efavgvigry vyavagrtrd etfysteryd itedkwefvd pypvnkyghe
      421 gtvlgnklyi tggitsssts kqvcvfdpsk egtveqrtrr tqvvtncwen kckmnyarcf
      481 hkmisyngkl yvfggvcvil rasfesqgcp stevydpdtd qwtilasmpi grsghgvavl
      541 dkqimvlggl cynghysdsi ltfdpeenkw kedeyprmpc kldglqvcsl hfpeyvlehv
      601 rrcs
//
LOCUS       XP_053911501             604 aa            linear   VRT 09-MAR-2023
DEFINITION  kelch-like protein 15 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911501
VERSION     XP_053911501.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055526.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..604
                     /product="kelch-like protein 15 isoform X1"
                     /calculated_mol_wt=69583
     Region          1..137
                     /region_name="BTB_POZ_KLHL15"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in Kelch-like
                     protein 15 (KLHL15); cd18244"
                     /db_xref="CDD:349553"
     Region          33..590
                     /region_name="PHA03098"
                     /note="kelch-like protein; Provisional"
                     /db_xref="CDD:222983"
     Region          128..235
                     /region_name="BACK_KLHL15"
                     /note="BACK (BTB and C-terminal Kelch) domain found in
                     Kelch-like protein 15 (KLHL15); cd18454"
                     /db_xref="CDD:350529"
     Region          321..365
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          369..412
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          417..474
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          478..529
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          532..572
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..604
                     /gene="KLHL15"
                     /coded_by="XM_054055526.1:144..1958"
                     /db_xref="GeneID:104059413"
ORIGIN      
        1 magdvegfss sihdtsvsag fralyeegll ldvtlviedh qfqahkalla tqsdyfrimf
       61 tadmrerdqd kihlkgltat gfshvlqfmy ygtielsmnt vheilqaamy vqlievvkfc
      121 csfllakicl encaeimrll ddfgvniegv rekldsflle nfvplmsrpd flsylsfekl
      181 msyldndhls rfpeielyea vqawlrhdrr rwrhtdtiiq nirfclmtps svfekvktse
      241 fyrysrqlrh evdqamnyfh svhqqplmem ksnkirsakp qtavfrgmig hsmvnskill
      301 lhkprvwwel egpqvplrpd claivnnfvf llggeelgpd gefhasskvf rydprqntwl
      361 rmadmsvprs efavgvigry vyavagrtrd etfysteryd itedkwefvd pypvnkyghe
      421 gtvlgnklyi tggitsssts kqvcvfdpsk egtveqrtrr tqvvtncwen kckmnyarcf
      481 hkmisyngkl yvfggvcvil rasfesqgcp stevydpdtd qwtilasmpi grsghgvavl
      541 dkqimvlggl cynghysdsi ltfdpeenkw kedeyprmpc kldglqvcsl hfpeyvlehv
      601 rrcs
//
LOCUS       XP_053911506             484 aa            linear   VRT 09-MAR-2023
DEFINITION  kelch-like protein 15 isoform X2 [Cuculus canorus].
ACCESSION   XP_053911506
VERSION     XP_053911506.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055531.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..484
                     /product="kelch-like protein 15 isoform X2"
                     /calculated_mol_wt=55272
     Region          1..116
                     /region_name="BTB_POZ"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; cl38908"
                     /db_xref="CDD:453885"
     Region          195..429
                     /region_name="NanM"
                     /note="N-acetylneuraminic acid mutarotase [Cell
                     wall/membrane/envelope biogenesis]; COG3055"
                     /db_xref="CDD:442289"
     Region          201..245
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          249..292
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          297..354
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          358..409
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          412..452
                     /region_name="Kelch_1"
                     /note="Kelch motif; pfam01344"
                     /db_xref="CDD:396078"
     Region          412..452
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..484
                     /gene="KLHL15"
                     /coded_by="XM_054055531.1:1260..2714"
                     /db_xref="GeneID:104059413"
ORIGIN      
        1 magdvegfss sihdtsvsag fralyeegll ldvtlviedh qfqahkalla tqsdyfrimf
       61 tadmrerdqd kihlkgltat gfshvlqfmy ygtielsmnt vheilqaamy vqlievktse
      121 fyrysrqlrh evdqamnyfh svhqqplmem ksnkirsakp qtavfrgmig hsmvnskill
      181 lhkprvwwel egpqvplrpd claivnnfvf llggeelgpd gefhasskvf rydprqntwl
      241 rmadmsvprs efavgvigry vyavagrtrd etfysteryd itedkwefvd pypvnkyghe
      301 gtvlgnklyi tggitsssts kqvcvfdpsk egtveqrtrr tqvvtncwen kckmnyarcf
      361 hkmisyngkl yvfggvcvil rasfesqgcp stevydpdtd qwtilasmpi grsghgvavl
      421 dkqimvlggl cynghysdsi ltfdpeenkw kedeyprmpc kldglqvcsl hfpeyvlehv
      481 rrcs
//
LOCUS       XP_053911517             472 aa            linear   VRT 09-MAR-2023
DEFINITION  eukaryotic translation initiation factor 2 subunit 3 [Cuculus
            canorus].
ACCESSION   XP_053911517
VERSION     XP_053911517.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055542.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..472
                     /product="eukaryotic translation initiation factor 2
                     subunit 3"
                     /calculated_mol_wt=50943
     Region          13..466
                     /region_name="PTZ00327"
                     /note="eukaryotic translation initiation factor 2 gamma
                     subunit; Provisional"
                     /db_xref="CDD:240362"
     CDS             1..472
                     /gene="EIF2S3"
                     /coded_by="XM_054055542.1:253..1671"
                     /db_xref="GeneID:104059422"
ORIGIN      
        1 magdeagvtl gqphlsrqdl aaldvtkltp lspevisrqa tinigtighv ahgkstvvka
       61 isgvhtvrfk nelernitik lgyanakiyk lddpscsrpe cyrscgsstp defptdipgt
      121 kgnfklvrhv sfvdcpghdi lmatmlngaa vmdaalllia gnescpqpqt sehlaaieim
      181 klkhililqn kidlvkesqa keqyeqilaf vqgtvaegap iipisaqlky nievvceyiv
      241 kkipvplrdf tseprlivir sfdvnkpgce vddlkggvag gsilkgvlkv gqeievrpgi
      301 vskdsegklm ckpifskivs lfaehndlqy aapggligvg tkidptlcra drmvgqvlga
      361 vgalpeifte leisyfllrr llgvrtegdk kaakvqklsk nevlmvnigs lstggrvsav
      421 kadlgkivlt npvctevgek ialsrrvekh wrligwgqir rgvtikptvd dd
//
LOCUS       XP_009562733             410 aa            linear   VRT 09-MAR-2023
DEFINITION  THAP domain-containing protein 5 isoform X1 [Cuculus canorus].
ACCESSION   XP_009562733
VERSION     XP_009562733.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009564438.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009562733.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..410
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..410
                     /product="THAP domain-containing protein 5 isoform X1"
                     /calculated_mol_wt=45831
     Region          4..86
                     /region_name="THAP"
                     /note="The THAP domain is a putative DNA-binding domain
                     (DBD) and probably also binds a zinc ion; smart00980"
                     /db_xref="CDD:214951"
     CDS             1..410
                     /gene="THAP5"
                     /coded_by="XM_009564438.2:76..1308"
                     /db_xref="GeneID:104062393"
ORIGIN      
        1 mprycaashc knrggqsard qrklsfypfp lhdkerlekw lrnmkrdawt pskhqllcsd
       61 hftpdsldvr wgirylkhta vptifsspdd eekdsvqntp qeikrqdlee tnknmeseka
      121 svplsapkkn pvvaenvaek aivcstalsk tlqipelqlq ngeesqansv vlgdssrqht
      181 hepnpvlmaa avpsmettsi htsvedpvgc aatvlqfaep nylnsslklk dalgsitdya
      241 ienpdthvvg csvevqptse navllstvtq tiehfsgsee sviaiivpae speeskivns
      301 sflpikqefl daeetetdkp vymsayggne vlqmehsyck qdidrdylwq kisklhskit
      361 llemqevktl grlrsleali gqlkqenlls eeklrivenc ftplevtmiq
//
LOCUS       XP_053911532             367 aa            linear   VRT 09-MAR-2023
DEFINITION  THAP domain-containing protein 5 isoform X2 [Cuculus canorus].
ACCESSION   XP_053911532
VERSION     XP_053911532.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055557.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..367
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..367
                     /product="THAP domain-containing protein 5 isoform X2"
                     /calculated_mol_wt=40657
     Region          <1..42
                     /region_name="THAP"
                     /note="THAP domain; pfam05485"
                     /db_xref="CDD:461662"
     CDS             1..367
                     /gene="THAP5"
                     /coded_by="XM_054055557.1:185..1288"
                     /db_xref="GeneID:104062393"
ORIGIN      
        1 mkrdawtpsk hqllcsdhft pdsldvrwgi rylkhtavpt ifsspddeek dsvqntpqei
       61 krqdleetnk nmesekasvp lsapkknpvv aenvaekaiv cstalsktlq ipelqlqnge
      121 esqansvvlg dssrqhthep npvlmaaavp smettsihts vedpvgcaat vlqfaepnyl
      181 nsslklkdal gsitdyaien pdthvvgcsv evqptsenav llstvtqtie hfsgseesvi
      241 aiivpaespe eskivnssfl pikqefldae etetdkpvym sayggnevlq mehsyckqdi
      301 drdylwqkis klhskitlle mqevktlgrl rslealigql kqenllseek lrivencftp
      361 levtmiq
//
LOCUS       XP_053911540             367 aa            linear   VRT 09-MAR-2023
DEFINITION  THAP domain-containing protein 5 isoform X2 [Cuculus canorus].
ACCESSION   XP_053911540
VERSION     XP_053911540.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055565.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..367
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..367
                     /product="THAP domain-containing protein 5 isoform X2"
                     /calculated_mol_wt=40657
     Region          <1..42
                     /region_name="THAP"
                     /note="THAP domain; pfam05485"
                     /db_xref="CDD:461662"
     CDS             1..367
                     /gene="THAP5"
                     /coded_by="XM_054055565.1:177..1280"
                     /db_xref="GeneID:104062393"
ORIGIN      
        1 mkrdawtpsk hqllcsdhft pdsldvrwgi rylkhtavpt ifsspddeek dsvqntpqei
       61 krqdleetnk nmesekasvp lsapkknpvv aenvaekaiv cstalsktlq ipelqlqnge
      121 esqansvvlg dssrqhthep npvlmaaavp smettsihts vedpvgcaat vlqfaepnyl
      181 nsslklkdal gsitdyaien pdthvvgcsv evqptsenav llstvtqtie hfsgseesvi
      241 aiivpaespe eskivnssfl pikqefldae etetdkpvym sayggnevlq mehsyckqdi
      301 drdylwqkis klhskitlle mqevktlgrl rslealigql kqenllseek lrivencftp
      361 levtmiq
//
LOCUS       XP_053911549             367 aa            linear   VRT 09-MAR-2023
DEFINITION  THAP domain-containing protein 5 isoform X2 [Cuculus canorus].
ACCESSION   XP_053911549
VERSION     XP_053911549.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055574.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..367
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..367
                     /product="THAP domain-containing protein 5 isoform X2"
                     /calculated_mol_wt=40657
     Region          <1..42
                     /region_name="THAP"
                     /note="THAP domain; pfam05485"
                     /db_xref="CDD:461662"
     CDS             1..367
                     /gene="THAP5"
                     /coded_by="XM_054055574.1:465..1568"
                     /db_xref="GeneID:104062393"
ORIGIN      
        1 mkrdawtpsk hqllcsdhft pdsldvrwgi rylkhtavpt ifsspddeek dsvqntpqei
       61 krqdleetnk nmesekasvp lsapkknpvv aenvaekaiv cstalsktlq ipelqlqnge
      121 esqansvvlg dssrqhthep npvlmaaavp smettsihts vedpvgcaat vlqfaepnyl
      181 nsslklkdal gsitdyaien pdthvvgcsv evqptsenav llstvtqtie hfsgseesvi
      241 aiivpaespe eskivnssfl pikqefldae etetdkpvym sayggnevlq mehsyckqdi
      301 drdylwqkis klhskitlle mqevktlgrl rslealigql kqenllseek lrivencftp
      361 levtmiq
//
LOCUS       XP_053911559             170 aa            linear   VRT 09-MAR-2023
DEFINITION  protein BTG1 [Cuculus canorus].
ACCESSION   XP_053911559
VERSION     XP_053911559.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055584.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..170
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..170
                     /product="protein BTG1"
                     /calculated_mol_wt=19043
     Region          11..125
                     /region_name="BTG"
                     /note="BTG family; pfam07742"
                     /db_xref="CDD:462251"
     CDS             1..170
                     /gene="BTG1"
                     /coded_by="XM_054055584.1:237..749"
                     /db_xref="GeneID:104058437"
ORIGIN      
        1 mhpalytras mireiaaavg fiskflrtkg lmnerqlqtf sqslqellae hykhhwfpek
       61 pckgsgyrci rinhkmdpli gqaaqrigls sqelfqllps eltlwvdpye vsyrigedgs
      121 icvlyeaapa ggsqnntnmq mvdsriscke elllgrtsps ksynmmtvsg
//
LOCUS       XP_009566725             255 aa            linear   VRT 09-MAR-2023
DEFINITION  platelet-derived growth factor subunit B [Cuculus canorus].
ACCESSION   XP_009566725
VERSION     XP_009566725.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568430.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..255
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..255
                     /product="platelet-derived growth factor subunit B"
                     /calculated_mol_wt=28742
     Region          30..100
                     /region_name="PDGF_N"
                     /note="Platelet-derived growth factor, N terminal region;
                     pfam04692"
                     /db_xref="CDD:461394"
     Site            order(102..105,141,143..146,161..164)
                     /site_type="active"
                     /note="receptor binding interface [active]"
                     /db_xref="CDD:238079"
     Region          104..187
                     /region_name="PDGF"
                     /note="PDGF/VEGF domain; pfam00341"
                     /db_xref="CDD:425620"
     Site            order(104,137,141,148,185,187)
                     /site_type="other"
                     /note="cysteine knot motif"
                     /db_xref="CDD:238079"
     Site            order(131,140)
                     /site_type="other"
                     /note="dimerization interface [polypeptide binding]"
                     /db_xref="CDD:238079"
     CDS             1..255
                     /gene="PDGFB"
                     /coded_by="XM_009568430.2:855..1622"
                     /db_xref="GeneID:104065896"
ORIGIN      
        1 mcpqpagpev gmnfgvvlaf ilslplarle gdpipediye ilggssvrsi sdlqralrid
       61 svdedtssld lnatqtrenr vvlsrerrsl dalaeaepav laecktravv feisrnmvds
      121 tnanfvvwpp cvevqrcsgc cnnrnvqcrp tqirvrhvqv nkiefvqrkp kfkkvivple
      181 dhvqcqceav srqpprnsrp aprpapreqr rlspsfttaa vsqrqrvrrl pvqkrkhkky
      241 khvndkkvlk eilva
//
LOCUS       XP_053911601             255 aa            linear   VRT 09-MAR-2023
DEFINITION  platelet-derived growth factor subunit B [Cuculus canorus].
ACCESSION   XP_053911601
VERSION     XP_053911601.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055626.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..255
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..255
                     /product="platelet-derived growth factor subunit B"
                     /calculated_mol_wt=28742
     Region          30..100
                     /region_name="PDGF_N"
                     /note="Platelet-derived growth factor, N terminal region;
                     pfam04692"
                     /db_xref="CDD:461394"
     Site            order(102..105,141,143..146,161..164)
                     /site_type="active"
                     /note="receptor binding interface [active]"
                     /db_xref="CDD:238079"
     Region          104..187
                     /region_name="PDGF"
                     /note="PDGF/VEGF domain; pfam00341"
                     /db_xref="CDD:425620"
     Site            order(104,137,141,148,185,187)
                     /site_type="other"
                     /note="cysteine knot motif"
                     /db_xref="CDD:238079"
     Site            order(131,140)
                     /site_type="other"
                     /note="dimerization interface [polypeptide binding]"
                     /db_xref="CDD:238079"
     CDS             1..255
                     /gene="PDGFB"
                     /coded_by="XM_054055626.1:855..1622"
                     /db_xref="GeneID:104065896"
ORIGIN      
        1 mcpqpagpev gmnfgvvlaf ilslplarle gdpipediye ilggssvrsi sdlqralrid
       61 svdedtssld lnatqtrenr vvlsrerrsl dalaeaepav laecktravv feisrnmvds
      121 tnanfvvwpp cvevqrcsgc cnnrnvqcrp tqirvrhvqv nkiefvqrkp kfkkvivple
      181 dhvqcqceav srqpprnsrp aprpapreqr rlspsfttaa vsqrqrvrrl pvqkrkhkky
      241 khvndkkvlk eilva
//
LOCUS       XP_053911608             255 aa            linear   VRT 09-MAR-2023
DEFINITION  platelet-derived growth factor subunit B [Cuculus canorus].
ACCESSION   XP_053911608
VERSION     XP_053911608.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055633.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..255
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..255
                     /product="platelet-derived growth factor subunit B"
                     /calculated_mol_wt=28742
     Region          30..100
                     /region_name="PDGF_N"
                     /note="Platelet-derived growth factor, N terminal region;
                     pfam04692"
                     /db_xref="CDD:461394"
     Site            order(102..105,141,143..146,161..164)
                     /site_type="active"
                     /note="receptor binding interface [active]"
                     /db_xref="CDD:238079"
     Region          104..187
                     /region_name="PDGF"
                     /note="PDGF/VEGF domain; pfam00341"
                     /db_xref="CDD:425620"
     Site            order(104,137,141,148,185,187)
                     /site_type="other"
                     /note="cysteine knot motif"
                     /db_xref="CDD:238079"
     Site            order(131,140)
                     /site_type="other"
                     /note="dimerization interface [polypeptide binding]"
                     /db_xref="CDD:238079"
     CDS             1..255
                     /gene="PDGFB"
                     /coded_by="XM_054055633.1:885..1652"
                     /db_xref="GeneID:104065896"
ORIGIN      
        1 mcpqpagpev gmnfgvvlaf ilslplarle gdpipediye ilggssvrsi sdlqralrid
       61 svdedtssld lnatqtrenr vvlsrerrsl dalaeaepav laecktravv feisrnmvds
      121 tnanfvvwpp cvevqrcsgc cnnrnvqcrp tqirvrhvqv nkiefvqrkp kfkkvivple
      181 dhvqcqceav srqpprnsrp aprpapreqr rlspsfttaa vsqrqrvrrl pvqkrkhkky
      241 khvndkkvlk eilva
//
LOCUS       XP_053911623            2552 aa            linear   VRT 09-MAR-2023
DEFINITION  probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X1
            [Cuculus canorus].
ACCESSION   XP_053911623
VERSION     XP_053911623.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055648.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2552
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2552
                     /product="probable ubiquitin carboxyl-terminal hydrolase
                     FAF-X isoform X1"
                     /calculated_mol_wt=290101
     Region          881..964
                     /region_name="Ubl1_cv_Nsp3_N-like"
                     /note="first ubiquitin-like (Ubl) domain located at the
                     N-terminus of coronavirus SARS-CoV non-structural protein
                     3 (Nsp3) and related proteins; cl28922"
                     /db_xref="CDD:475130"
     Region          1555..1957
                     /region_name="peptidase_C19C"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02659"
                     /db_xref="CDD:239124"
     Site            order(1561,1566,1878,1901)
                     /site_type="active"
                     /db_xref="CDD:239124"
     Region          2096..2475
                     /region_name="DUF3517"
                     /note="Domain of unknown function (DUF3517); pfam12030"
                     /db_xref="CDD:463438"
     CDS             1..2552
                     /gene="USP9X"
                     /coded_by="XM_054055648.1:473..8131"
                     /db_xref="GeneID:104057300"
ORIGIN      
        1 mtattrgspv ggndsqgqap dgqsqpplqq nqtsspdssn enspatppde qaqgdappql
       61 edeepafpht dlaklddmin rprwvvpvlp kgelevllea aidlskkgld vkseacqrff
      121 rdgltisftk iltdeavsgw kfeihrciin nthrlvelcv aklsqdwfpl lellamalnp
      181 hckfhlyngt rpsetvpagv qlaedelyar ppdprspkgw lvdlinkfgt lngfqilhdr
      241 fmsgsalnvq iiaalikpfg qcyefltlht vkkyflpiie mvpqflenlt ddelkkeakn
      301 eakndalsmi ikslknlasr vpgqeetvkn leifrlkmil rllqissfng kmnalnevnk
      361 vissvsyyth rhgnpeeeew ltaermaewi qqnnilsivl rdslhqpqyv eklekilrfv
      421 ikekaltlqd ldniwaaqag kheaivknvh dllaklawdf speqldhlfd cfkaswtnas
      481 kkqrekllel irrlaeddkd gvmahkvlnl lwnlahsddv pvdimdqals ahikildysc
      541 sqdrdtqkvq widrfieelr tndkwvipal kqireicslf geapqnlsqt qrsphvfyrh
      601 dlinqlqhnh alvtlvaenl saymesmrqy akehgeydpq tvrpgsrysh vqevqerlnf
      661 lrfllkdgql wlcapqakqi wkclaenavy lcdreacfkw ysklmgdepd ldpdinkdff
      721 ennvlqldps lltengmkcf erffkavncr egklvakrra ymmddlelig ldylwrvviq
      781 gnddianrai dllkeiytnl gprlqvnqvv ihedfiqscf drlkasydtl cvldgdkdsi
      841 ncarqeairm vrvltvlrey inecdsdyhe ertilpmsra frgkhitlvv rfpnqgrqve
      901 dldiwshtnd tigqvrrcil nrikansaht kvelfiggel vdpaddrkli gqlnlkdktl
      961 itakltqins nmpsspdsss dsstgspgnh gnhysdgpnp evesclpgvi mslhpryisf
     1021 lwqvadlgss lnmpplrdga rvlmklmppd nttveklrai cldhaklges slspsldslf
     1081 fgpsasqvly ltevvyallm pasvplgeda sdfqynflks gglplvlsml trnnflpnad
     1141 metrrgayln alkiaklllt aigyghvrav aeacqpvveg tstispinqa thdqavvlqn
     1201 alqnipnpts ecmlrnvair laqqisdeas kyipdicvir avqkivwasg cgsvqlvfss
     1261 neeiskiyek tnagnepdme deqvcceale vmtlcfalip taldalskek awqtfiidll
     1321 lhchsktvrq maqeqfflma trccmgqrpl lffitllftv lgstarerak hsgdyftllr
     1381 hllnyaynsn invpnaevll nneidwlkri rdevkrtget gveetilegh lgvtkellaf
     1441 qtpekkyhig cekgganlik eliddfifpa snvylqymrn gelpaeqaip vcsspatina
     1501 gfellvalav gcvrnlkqiv dtltemyyig taittcealt eweylppvgp rppkgfvglk
     1561 nagatcymns viqqlymipa irngilaieg tgsdvdddms gdekqdnesn vdprddvfgy
     1621 phqyedkpal sktedrkeyn igvlrhlqvi fghlaasrlq yyvprgfwkq frlwgepvnl
     1681 reqhdaleff nslvdsldea lkalghpaml skvlggsfad qkicqgcphr yeceesfttl
     1741 nvdirnhqnl ldsleqyvkg dlleganayh cekcnkkvdt vkrllikklp pvlaiqlkrf
     1801 dydwerecai kfndyfefpr eldmepytva gvaklegddv npenqiiqne qsenehsgst
     1861 kyrlvgvlvh sgqasgghyy syiiqrnggd geknrwykfd dgdvteckmd ddeemknqcf
     1921 ggeymgevfd hmmkrmsyrr qkrwwnayil fyermdtidk dnelikyise laittkphqi
     1981 kmpsaiersv rkqnvqfmhn rmqysleyfq fikklltcns vylnpppgqd hllpeaeeit
     2041 misiqlaarf lfttgfhtkk ivrgpasdwy dalcillrhs knvrfwfahn vlfnvsnrfs
     2101 eyllecpsae vrgafakliv fiahfslqdg pcpspfaspg pssqaydnls lsdhllravl
     2161 nllrrevseh grhlqqyfnl fvmyanlgva ektqllklnv patfmlvald egpgppikyq
     2221 yaelgklytv vsqlirccnv ssrmqssing npplanpygd pnisqpimal qqnvadilfv
     2281 rtsyvkkiie dcsnseetik llrfccwenp qfsstvlsel lwqvaysyty elrpyldlll
     2341 qilliedswq thrihnalkg ipddrdglfd tiqrsknhyq krayqcikcm valfsncpva
     2401 yqilqsngdl krkwtwavew lgdelerrpy tgnpqytynn wsppiqsnet sngyflersh
     2461 sarmtlakac elcpeeepdd pdapdehess ppedaplyph spgsqyqqnn hvhgqpytgp
     2521 aahhmnnpqr tgqraqenye gseevsppqt kd
//
LOCUS       XP_053911627            2547 aa            linear   VRT 09-MAR-2023
DEFINITION  probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X2
            [Cuculus canorus].
ACCESSION   XP_053911627
VERSION     XP_053911627.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055652.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2547
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2547
                     /product="probable ubiquitin carboxyl-terminal hydrolase
                     FAF-X isoform X2"
                     /calculated_mol_wt=289627
     Region          881..964
                     /region_name="Ubl1_cv_Nsp3_N-like"
                     /note="first ubiquitin-like (Ubl) domain located at the
                     N-terminus of coronavirus SARS-CoV non-structural protein
                     3 (Nsp3) and related proteins; cl28922"
                     /db_xref="CDD:475130"
     Region          1550..1952
                     /region_name="peptidase_C19C"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02659"
                     /db_xref="CDD:239124"
     Site            order(1556,1561,1873,1896)
                     /site_type="active"
                     /db_xref="CDD:239124"
     Region          2091..2470
                     /region_name="DUF3517"
                     /note="Domain of unknown function (DUF3517); pfam12030"
                     /db_xref="CDD:463438"
     CDS             1..2547
                     /gene="USP9X"
                     /coded_by="XM_054055652.1:473..8116"
                     /db_xref="GeneID:104057300"
ORIGIN      
        1 mtattrgspv ggndsqgqap dgqsqpplqq nqtsspdssn enspatppde qaqgdappql
       61 edeepafpht dlaklddmin rprwvvpvlp kgelevllea aidlskkgld vkseacqrff
      121 rdgltisftk iltdeavsgw kfeihrciin nthrlvelcv aklsqdwfpl lellamalnp
      181 hckfhlyngt rpsetvpagv qlaedelyar ppdprspkgw lvdlinkfgt lngfqilhdr
      241 fmsgsalnvq iiaalikpfg qcyefltlht vkkyflpiie mvpqflenlt ddelkkeakn
      301 eakndalsmi ikslknlasr vpgqeetvkn leifrlkmil rllqissfng kmnalnevnk
      361 vissvsyyth rhgnpeeeew ltaermaewi qqnnilsivl rdslhqpqyv eklekilrfv
      421 ikekaltlqd ldniwaaqag kheaivknvh dllaklawdf speqldhlfd cfkaswtnas
      481 kkqrekllel irrlaeddkd gvmahkvlnl lwnlahsddv pvdimdqals ahikildysc
      541 sqdrdtqkvq widrfieelr tndkwvipal kqireicslf geapqnlsqt qrsphvfyrh
      601 dlinqlqhnh alvtlvaenl saymesmrqy akehgeydpq tvrpgsrysh vqevqerlnf
      661 lrfllkdgql wlcapqakqi wkclaenavy lcdreacfkw ysklmgdepd ldpdinkdff
      721 ennvlqldps lltengmkcf erffkavncr egklvakrra ymmddlelig ldylwrvviq
      781 gnddianrai dllkeiytnl gprlqvnqvv ihedfiqscf drlkasydtl cvldgdkdsi
      841 ncarqeairm vrvltvlrey inecdsdyhe ertilpmsra frgkhitlvv rfpnqgrqve
      901 dldiwshtnd tigqvrrcil nrikansaht kvelfiggel vdpaddrkli gqlnlkdktl
      961 itakltqins nmpsspdsss dsstgspgnh gnhysdgpnp evesclpgvi mslhpryisf
     1021 lwqvadlgss lnmpplrdga rvlmklmppd nttveklrai cldhaklges slspsldslf
     1081 fgpsasqvly ltevvyallm pasvplgeda sdfqynflks gglplvlsml trnnflpnad
     1141 metrrgayln alkiaklllt aigyghvrav aeacqpvveg tstispinqa thdqavvlqn
     1201 alqnipnpts ecmlrnvair laqqisdeas kyipdicvir avqkivwasg cgsvqlvfss
     1261 neeiskiyek tnagnepdme deqvcceale vmtlcfalip taldalskek awqtfiidll
     1321 lhchsktvrq maqeqfflma trccmgqrpl lffitllftv lgstarerak hsgdyftllr
     1381 hllnyaynsn invpnaevll nneidwlkri rdevkrtget gveetilegh lgvtkellaf
     1441 qtpekkyhig cekgganlik eliddfifpa snvylqymrn gelpaeqaip vcsspatina
     1501 gfellvalav gcvrnlkqiv dtltemyyia cealteweyl ppvgprppkg fvglknagat
     1561 cymnsviqql ymipairngi laiegtgsdv dddmsgdekq dnesnvdprd dvfgyphqye
     1621 dkpalskted rkeynigvlr hlqvifghla asrlqyyvpr gfwkqfrlwg epvnlreqhd
     1681 aleffnslvd sldealkalg hpamlskvlg gsfadqkicq gcphryecee sfttlnvdir
     1741 nhqnlldsle qyvkgdlleg anayhcekcn kkvdtvkrll ikklppvlai qlkrfdydwe
     1801 recaikfndy fefpreldme pytvagvakl egddvnpenq iiqneqsene hsgstkyrlv
     1861 gvlvhsgqas gghyysyiiq rnggdgeknr wykfddgdvt eckmdddeem knqcfggeym
     1921 gevfdhmmkr msyrrqkrww nayilfyerm dtidkdneli kyiselaitt kphqikmpsa
     1981 iersvrkqnv qfmhnrmqys leyfqfikkl ltcnsvylnp ppgqdhllpe aeeitmisiq
     2041 laarflfttg fhtkkivrgp asdwydalci llrhsknvrf wfahnvlfnv snrfseylle
     2101 cpsaevrgaf aklivfiahf slqdgpcpsp faspgpssqa ydnlslsdhl lravlnllrr
     2161 evsehgrhlq qyfnlfvmya nlgvaektql lklnvpatfm lvaldegpgp pikyqyaelg
     2221 klytvvsqli rccnvssrmq ssingnppla npygdpnisq pimalqqnva dilfvrtsyv
     2281 kkiiedcsns eetikllrfc cwenpqfsst vlsellwqva ysytyelrpy ldlllqilli
     2341 edswqthrih nalkgipddr dglfdtiqrs knhyqkrayq cikcmvalfs ncpvayqilq
     2401 sngdlkrkwt wavewlgdel errpytgnpq ytynnwsppi qsnetsngyf lershsarmt
     2461 lakacelcpe eepddpdapd ehessppeda plyphspgsq yqqnnhvhgq pytgpaahhm
     2521 nnpqrtgqra qenyegseev sppqtkd
//
LOCUS       XP_053911635             283 aa            linear   VRT 09-MAR-2023
DEFINITION  protein shisa-2 homolog [Cuculus canorus].
ACCESSION   XP_053911635
VERSION     XP_053911635.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055660.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..283
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..283
                     /product="protein shisa-2 homolog"
                     /calculated_mol_wt=30017
     Region          22..199
                     /region_name="Shisa"
                     /note="Wnt and FGF inhibitory regulator; pfam13908"
                     /db_xref="CDD:464036"
     CDS             1..283
                     /gene="SHISA2"
                     /coded_by="XM_054055660.1:210..1061"
                     /db_xref="GeneID:104064225"
ORIGIN      
        1 mrrwvllaal gwllpagaaa sgeychgwld aqggwrdgfq cperfdggda ticcgscalr
       61 yccaspearl dqgacdndrr lggagdparp gkdgpdgaav piyvpflivg svfvafiilg
      121 slvaacccrc lrpkqepqqs rapggtrlme tipmipsast srgsssrqss taasssssan
      181 sgarapptrs qtncclpegt mnnvyvnmpt nfsvlncqqa tqivphqgqy lhpqyvgyav
      241 qhdsmpltpv ppfldglqsg yrqiqspyph tnseqkmypa vtv
//
LOCUS       XP_053911645             403 aa            linear   VRT 09-MAR-2023
DEFINITION  60S ribosomal protein L3 [Cuculus canorus].
ACCESSION   XP_053911645
VERSION     XP_053911645.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055670.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..403
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..403
                     /product="60S ribosomal protein L3"
                     /calculated_mol_wt=45939
     Region          1..400
                     /region_name="PTZ00103"
                     /note="60S ribosomal protein L3; Provisional"
                     /db_xref="CDD:240267"
     CDS             1..403
                     /gene="RPL3"
                     /coded_by="XM_054055670.1:129..1340"
                     /db_xref="GeneID:104065924"
ORIGIN      
        1 mshrkfsapr hgslgflprk rssrhrgkvk sfpkddpskp vhltaflgyk agmthivrev
       61 drpgskvnkk evveavtive tppmvivgiv gyvqtprglr sfktifaehi sdeckrrfyk
      121 nwhkskkkaf tkyckkwqde egkkqlekdf nsmkkycqvi rvmahtqmrl lplrqkkshl
      181 meiqvnggtv aekvdwarek leqqvpvssv fgqdemidvi gvtkgkgykg vtsrwhtkkl
      241 prkthrglrk vacigawhpa rvafsvarag qkgyhhrtei nkkiykigqg yqikdgklik
      301 nnastdydls dksinplggf vhygevtndf imlkgcvvgt kkrvltlrks llvqtkrral
      361 ekidlkfidt tskfghgrfq taeekkafmg plkkdriake eaa
//
LOCUS       XP_053911652             325 aa            linear   VRT 09-MAR-2023
DEFINITION  RING finger protein 121 [Cuculus canorus].
ACCESSION   XP_053911652
VERSION     XP_053911652.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055677.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..325
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..325
                     /product="RING finger protein 121"
                     /calculated_mol_wt=37801
     Region          <54..211
                     /region_name="MFS"
                     /note="Major Facilitator Superfamily; cl28910"
                     /db_xref="CDD:475125"
     Region          222..276
                     /region_name="RING-H2_RNF121-like"
                     /note="RING finger, H2 subclass, found in RING finger
                     proteins RNF121, RNF175 and similar proteins; cd16475"
                     /db_xref="CDD:438138"
     CDS             1..325
                     /gene="RNF121"
                     /coded_by="XM_054055677.1:31..1008"
                     /db_xref="GeneID:128850696"
ORIGIN      
        1 maavleveve gpaerdveev dlshlspeer wrveharmha khrgheamha emvliliatl
       61 vvaqlllvqw kqrhprsynm vtlfqmwvvp lyftiklyww rfllvwvffs avtafitfra
      121 trkplvqttp rlvykwflli ykisyatgiv gymavmftlf glnllfrikp edamdfgisl
      181 lfyglyygvl erdfaemcad ymastigfys asgmptkhls dsvcavcgqq ilvdvneegi
      241 ientyrlscn hvfhefcirg wcivgkkqtc pyckekvdlk rmfsnpwerp hvlygqlldw
      301 lrylvawqpv iiglvqginy ilgle
//
LOCUS       XP_009567549             602 aa            linear   VRT 09-MAR-2023
DEFINITION  dual specificity tyrosine-phosphorylation-regulated kinase 4
            isoform X1 [Cuculus canorus].
ACCESSION   XP_009567549
VERSION     XP_009567549.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009569254.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..602
                     /product="dual specificity
                     tyrosine-phosphorylation-regulated kinase 4 isoform X1"
                     /calculated_mol_wt=68760
     Region          151..491
                     /region_name="PKc_DYRK4"
                     /note="Catalytic domain of the protein kinase,
                     Dual-specificity tYrosine-phosphorylated and -Regulated
                     Kinase 4; cd14225"
                     /db_xref="CDD:271127"
     Site            order(201..205,209,222,224,238,258,274..277,280,282..283,
                     321,323,325..326,328,341,344,353,355..358,360,397)
                     /site_type="active"
                     /db_xref="CDD:271127"
     Site            order(201..205,209,222,224,258,274..277,280,321,323,
                     325..326,328,341)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:271127"
     Site            order(238,282,321,323,344,353,355..358,360,397)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:271127"
     Site            340..360
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:271127"
     CDS             1..602
                     /gene="DYRK4"
                     /coded_by="XM_009569254.2:219..2027"
                     /db_xref="GeneID:104066627"
ORIGIN      
        1 mlteivdkss hvdafsqsql tvqerdhlgp nrvfhqkvsh svlslphleg qakhglvadt
       61 anllpletlp qiakkslqnv lpslqengtq gnfsefnlpn slpesdtraq tkpselgrtc
      121 invklpmtas ealknfrnql svyeqkeifn ytelwflgle akkieglpet hnnncyddeh
      181 gsylkvlhdh iayryevlev igkgsfgqva kcldhktnel valkiirnkk rfhsqalvev
      241 kildallkkd kddthniihm keyfyfrnhf cisfellgin lyelikknnf qgfslslirh
      301 ftqcvlrclq vlyqeriihc dlkpenilly hkgqgsvkvi dfgsscyehq rvytyvqsrf
      361 yrspevilgh pyamavdmws lgcimaelyt gyplfpgene vdqlacimev lglppadfiq
      421 aasrkrtffd skgfpksitn skgkkrcpds kdlstvlkth dtgfldflkg clmwepalrm
      481 tpdeamnhaw iqepkiyrak qktqtswkls egssstpesq keniqniwqd tadkvksela
      541 erltptvpct gitendlqnm krhvlpenyl etqmekpirs dqvehsgeka lpksalffpp
      601 ik
//
LOCUS       XP_053911668             534 aa            linear   VRT 09-MAR-2023
DEFINITION  dual specificity tyrosine-phosphorylation-regulated kinase 4
            isoform X2 [Cuculus canorus].
ACCESSION   XP_053911668
VERSION     XP_053911668.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055693.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..534
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..534
                     /product="dual specificity
                     tyrosine-phosphorylation-regulated kinase 4 isoform X2"
                     /calculated_mol_wt=61248
     Region          83..423
                     /region_name="PKc_DYRK4"
                     /note="Catalytic domain of the protein kinase,
                     Dual-specificity tYrosine-phosphorylated and -Regulated
                     Kinase 4; cd14225"
                     /db_xref="CDD:271127"
     Site            order(133..137,141,154,156,170,190,206..209,212,214..215,
                     253,255,257..258,260,273,276,285,287..290,292,329)
                     /site_type="active"
                     /db_xref="CDD:271127"
     Site            order(133..137,141,154,156,190,206..209,212,253,255,
                     257..258,260,273)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:271127"
     Site            order(170,214,253,255,276,285,287..290,292,329)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:271127"
     Site            272..292
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:271127"
     CDS             1..534
                     /gene="DYRK4"
                     /coded_by="XM_054055693.1:648..2252"
                     /db_xref="GeneID:104066627"
ORIGIN      
        1 mcsklltise lspefaseng tqgnfsefnl pnslpesdtr aqtkpselgr tcinvklpmt
       61 asealknfrn qlsvyeqkei fnytelwflg leakkieglp ethnnncydd ehgsylkvlh
      121 dhiayryevl evigkgsfgq vakcldhktn elvalkiirn kkrfhsqalv evkildallk
      181 kdkddthnii hmkeyfyfrn hfcisfellg inlyelikkn nfqgfslsli rhftqcvlrc
      241 lqvlyqerii hcdlkpenil lyhkgqgsvk vidfgsscye hqrvytyvqs rfyrspevil
      301 ghpyamavdm wslgcimael ytgyplfpge nevdqlacim evlglppadf iqaasrkrtf
      361 fdskgfpksi tnskgkkrcp dskdlstvlk thdtgfldfl kgclmwepal rmtpdeamnh
      421 awiqepkiyr akqktqtswk lsegssstpe sqkeniqniw qdtadkvkse laerltptvp
      481 ctgitendlq nmkrhvlpen yletqmekpi rsdqvehsge kalpksalff ppik
//
LOCUS       XP_053911672             616 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: putative DBH-like monooxygenase protein 2
            [Cuculus canorus].
ACCESSION   XP_053911672
VERSION     XP_053911672.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055697.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..616
                     /product="LOW QUALITY PROTEIN: putative DBH-like
                     monooxygenase protein 2"
                     /calculated_mol_wt=69387
     Region          36..159
                     /region_name="DOMON_DOH"
                     /note="DOMON-like domain of copper-dependent
                     monooxygenases and related proteins; cd09631"
                     /db_xref="CDD:187689"
     Site            order(65,67..68,80..82,142,144,151)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:187689"
     Region          192..316
                     /region_name="Cu2_monooxygen"
                     /note="Copper type II ascorbate-dependent monooxygenase,
                     N-terminal domain; pfam01082"
                     /db_xref="CDD:460053"
     Region          335..482
                     /region_name="Cu2_monoox_C"
                     /note="Copper type II ascorbate-dependent monooxygenase,
                     C-terminal domain; pfam03712"
                     /db_xref="CDD:461021"
     CDS             1..616
                     /gene="LOC104066639"
                     /coded_by="XM_054055697.1:1..1851"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon"
                     /db_xref="GeneID:104066639"
ORIGIN      
        1 mavlfsrikg mlfllflprf csgqpalpll rfstfldpsn mvylrwdhde qelmtfelhv
       61 httgwvafgl slhgewpgsd vviggvfpng siyfsdchmv deaileedds qdyqllsvte
      121 netcttmlfr rhfrtcdpnd lditvdtarl itafgtddti qfvkgqrfsk slslmryrgp
      181 sdltdpkiff tydlrldnfp vpveetkyac tfiplpivkq khhiykfepv itphntalvh
      241 hilvyacgna svlpsgiddc yganpdfalc sqviagwavg gasyqfpdea aisigtpwdp
      301 qyvrleihys nfdllpglid ssglqiyytp elrkydvgvl qtgiftfpvh fippgaesyr
      361 syglcnssqf demngmlvpd mhvfayllht hlsgrgvktv qyrngkqlni icednkydfg
      421 lqefrdmkei liikpgdeil vecnfrtldr seitfgglst mnemcltflf yyprnnissc
      481 msypdilyia helkqeasda vegmmamylv dwdndtikta ekaakeadqv vmiktinelh
      541 rnesglirdi siperaachn isghlslsgp rasanlrlta actlespatk gtaslpllsl
      601 tqlvffwlil tseygq
//
LOCUS       XP_053911682            1253 aa            linear   VRT 09-MAR-2023
DEFINITION  cytoplasmic FMR1-interacting protein 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053911682
VERSION     XP_053911682.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055707.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1253
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1253
                     /product="cytoplasmic FMR1-interacting protein 1 isoform
                     X1"
                     /calculated_mol_wt=145277
     Region          404..1222
                     /region_name="FragX_IP"
                     /note="Cytoplasmic Fragile-X interacting family;
                     pfam05994"
                     /db_xref="CDD:461799"
     CDS             1..1253
                     /gene="CYFIP1"
                     /coded_by="XM_054055707.1:166..3927"
                     /db_xref="GeneID:104066343"
ORIGIN      
        1 mtaqvtleda lsnvdlleel plpdqqpcie pppssllyqp nfntnfedrn afvtgiaryi
       61 eqatvhssmn emleegqeya vmlytwrscs raipqvkcne qpnrveiyek tvevlepevt
      121 klmnfmyfqr naierfcgev rrlchaerrk dfvseaylit lgkfinmfav ldelknmkcs
      181 vkndhsaykr aaqflrkmad pqsiqesqnl smflanhnki tqslqqqlev ivgyeellad
      241 ivnlcvdyye nkmyltpsek hmllkvmgfg lylmdgsvsn iykldakkri nlakidkffk
      301 qlqvvplfgd mqielaryik tsahyeenks rwtctsssss pqyniceqmi qiredhmrfi
      361 selarysnse vvtgsgrqea qktdaeyrkl fdlslqglql lsqwsahvme vyswklvhpt
      421 dkysnkdcpd naeeyeratr ynytseekfa lveviamikg lqvlmgrmes vfnhairhti
      481 yaalqdfaqv tlreplrqai kkkknviqsv lqairktvcd weaghepfnd palrgekdpk
      541 sgfdikvprr avgpsstqly mvrtmlesli adksgskktl rsslegptil diekfhresf
      601 fythlinfse tlqqccdlsq lwfrefflel tmgrriqfpi emsmpwiltd hiletkeasm
      661 meyvlysldl yndsahyalt kfkkqflyde ieaevnlcfd qfvykladqi fayykamags
      721 llldkrlrse cknqgatiql lqsnryetll kqrhvqllgr sidlnrlitq risaamyrsm
      781 elaigrfese dltsiveldg lieinkmthk llsrymtlds fdamfreanh nvsapygrit
      841 lhvfwelnyd flpnycyngs tnrfvrtvlp fsqefqrdkq pnaqpqylyg skalnlayss
      901 iysnyrnfvg pphfkvicrl lgyqgiavvm eellkvvksl lqgtilqyvk tlmevmpkic
      961 rlprheygsp gileffhhql kdiveyaelk tvcfqnlrev gnavlfclli eqslsleevc
     1021 dllhaapfqn ilprvhvkeg erldakmkrl eskyaplhlv plierlgtpq qiaiaregdl
     1081 ltkerlccgl smfeviltri rsflddpiwr gplpsngvmh vdecvefhrl wsamqfvyci
     1141 pvgtheftve qcfgdglhwa gcmiivllgq qrrfdvldfc yhllkvqkhd gkdeviknvp
     1201 lkkmverirk fqilndeiia ildkylksgd gestpvehvr cfqppihqsl asn
//
LOCUS       XP_053911687            1253 aa            linear   VRT 09-MAR-2023
DEFINITION  cytoplasmic FMR1-interacting protein 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053911687
VERSION     XP_053911687.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055712.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1253
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1253
                     /product="cytoplasmic FMR1-interacting protein 1 isoform
                     X1"
                     /calculated_mol_wt=145277
     Region          404..1222
                     /region_name="FragX_IP"
                     /note="Cytoplasmic Fragile-X interacting family;
                     pfam05994"
                     /db_xref="CDD:461799"
     CDS             1..1253
                     /gene="CYFIP1"
                     /coded_by="XM_054055712.1:336..4097"
                     /db_xref="GeneID:104066343"
ORIGIN      
        1 mtaqvtleda lsnvdlleel plpdqqpcie pppssllyqp nfntnfedrn afvtgiaryi
       61 eqatvhssmn emleegqeya vmlytwrscs raipqvkcne qpnrveiyek tvevlepevt
      121 klmnfmyfqr naierfcgev rrlchaerrk dfvseaylit lgkfinmfav ldelknmkcs
      181 vkndhsaykr aaqflrkmad pqsiqesqnl smflanhnki tqslqqqlev ivgyeellad
      241 ivnlcvdyye nkmyltpsek hmllkvmgfg lylmdgsvsn iykldakkri nlakidkffk
      301 qlqvvplfgd mqielaryik tsahyeenks rwtctsssss pqyniceqmi qiredhmrfi
      361 selarysnse vvtgsgrqea qktdaeyrkl fdlslqglql lsqwsahvme vyswklvhpt
      421 dkysnkdcpd naeeyeratr ynytseekfa lveviamikg lqvlmgrmes vfnhairhti
      481 yaalqdfaqv tlreplrqai kkkknviqsv lqairktvcd weaghepfnd palrgekdpk
      541 sgfdikvprr avgpsstqly mvrtmlesli adksgskktl rsslegptil diekfhresf
      601 fythlinfse tlqqccdlsq lwfrefflel tmgrriqfpi emsmpwiltd hiletkeasm
      661 meyvlysldl yndsahyalt kfkkqflyde ieaevnlcfd qfvykladqi fayykamags
      721 llldkrlrse cknqgatiql lqsnryetll kqrhvqllgr sidlnrlitq risaamyrsm
      781 elaigrfese dltsiveldg lieinkmthk llsrymtlds fdamfreanh nvsapygrit
      841 lhvfwelnyd flpnycyngs tnrfvrtvlp fsqefqrdkq pnaqpqylyg skalnlayss
      901 iysnyrnfvg pphfkvicrl lgyqgiavvm eellkvvksl lqgtilqyvk tlmevmpkic
      961 rlprheygsp gileffhhql kdiveyaelk tvcfqnlrev gnavlfclli eqslsleevc
     1021 dllhaapfqn ilprvhvkeg erldakmkrl eskyaplhlv plierlgtpq qiaiaregdl
     1081 ltkerlccgl smfeviltri rsflddpiwr gplpsngvmh vdecvefhrl wsamqfvyci
     1141 pvgtheftve qcfgdglhwa gcmiivllgq qrrfdvldfc yhllkvqkhd gkdeviknvp
     1201 lkkmverirk fqilndeiia ildkylksgd gestpvehvr cfqppihqsl asn
//
LOCUS       XP_053911692            1252 aa            linear   VRT 09-MAR-2023
DEFINITION  cytoplasmic FMR1-interacting protein 1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053911692
VERSION     XP_053911692.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055717.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1252
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1252
                     /product="cytoplasmic FMR1-interacting protein 1 isoform
                     X2"
                     /calculated_mol_wt=145149
     Region          403..1221
                     /region_name="FragX_IP"
                     /note="Cytoplasmic Fragile-X interacting family;
                     pfam05994"
                     /db_xref="CDD:461799"
     CDS             1..1252
                     /gene="CYFIP1"
                     /coded_by="XM_054055717.1:166..3924"
                     /db_xref="GeneID:104066343"
ORIGIN      
        1 mtaqvtleda lsnvdlleel plpdqqpcie pppssllyqp nfntnfedrn afvtgiaryi
       61 eqatvhssmn emleegqeya vmlytwrscs raipqvkcne qpnrveiyek tvevlepevt
      121 klmnfmyfqr naierfcgev rrlchaerrk dfvseaylit lgkfinmfav ldelknmkcs
      181 vkndhsaykr aaqflrkmad pqsiqesqnl smflanhnki tqslqqqlev ivgyeellad
      241 ivnlcvdyye nkmyltpsek hmllkvmgfg lylmdgsvsn iykldakkri nlakidkffk
      301 lqvvplfgdm qielaryikt sahyeenksr wtctsssssp qyniceqmiq iredhmrfis
      361 elarysnsev vtgsgrqeaq ktdaeyrklf dlslqglqll sqwsahvmev yswklvhptd
      421 kysnkdcpdn aeeyeratry nytseekfal veviamikgl qvlmgrmesv fnhairhtiy
      481 aalqdfaqvt lreplrqaik kkknviqsvl qairktvcdw eaghepfndp alrgekdpks
      541 gfdikvprra vgpsstqlym vrtmleslia dksgskktlr sslegptild iekfhresff
      601 ythlinfset lqqccdlsql wfrefflelt mgrriqfpie msmpwiltdh iletkeasmm
      661 eyvlysldly ndsahyaltk fkkqflydei eaevnlcfdq fvykladqif ayykamagsl
      721 lldkrlrsec knqgatiqll qsnryetllk qrhvqllgrs idlnrlitqr isaamyrsme
      781 laigrfesed ltsiveldgl ieinkmthkl lsrymtldsf damfreanhn vsapygritl
      841 hvfwelnydf lpnycyngst nrfvrtvlpf sqefqrdkqp naqpqylygs kalnlayssi
      901 ysnyrnfvgp phfkvicrll gyqgiavvme ellkvvksll qgtilqyvkt lmevmpkicr
      961 lprheygspg ileffhhqlk diveyaelkt vcfqnlrevg navlfcllie qslsleevcd
     1021 llhaapfqni lprvhvkege rldakmkrle skyaplhlvp lierlgtpqq iaiaregdll
     1081 tkerlccgls mfeviltrir sflddpiwrg plpsngvmhv decvefhrlw samqfvycip
     1141 vgtheftveq cfgdglhwag cmiivllgqq rrfdvldfcy hllkvqkhdg kdeviknvpl
     1201 kkmverirkf qilndeiiai ldkylksgdg estpvehvrc fqppihqsla sn
//
LOCUS       XP_053911700            1251 aa            linear   VRT 09-MAR-2023
DEFINITION  cytoplasmic FMR1-interacting protein 1 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053911700
VERSION     XP_053911700.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055725.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1251
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1251
                     /product="cytoplasmic FMR1-interacting protein 1 isoform
                     X3"
                     /calculated_mol_wt=145045
     Region          404..1220
                     /region_name="FragX_IP"
                     /note="Cytoplasmic Fragile-X interacting family;
                     pfam05994"
                     /db_xref="CDD:461799"
     CDS             1..1251
                     /gene="CYFIP1"
                     /coded_by="XM_054055725.1:166..3921"
                     /db_xref="GeneID:104066343"
ORIGIN      
        1 mtaqvtleda lsnvdlleel plpdqqpcie pppssllyqp nfntnfedrn afvtgiaryi
       61 eqatvhssmn emleegqeya vmlytwrscs raipqvkcne qpnrveiyek tvevlepevt
      121 klmnfmyfqr naierfcgev rrlchaerrk dfvseaylit lgkfinmfav ldelknmkcs
      181 vkndhsaykr aaqflrkmad pqsiqesqnl smflanhnki tqslqqqlev ivgyeellad
      241 ivnlcvdyye nkmyltpsek hmllkvmgfg lylmdgsvsn iykldakkri nlakidkffk
      301 qlqvvplfgd mqielaryik tsahyeenks rwtctsssss pqyniceqmi qiredhmrfi
      361 selarysnse vvtgsgrqea qktdaeyrkl fdlslqglql lsqwsahvme vyswklvhpt
      421 dkysnkdcpd naeeyeratr ynytseekfa lveviamikg lqvlmgrmes vfnhairhti
      481 yaalqdfaqv tlreplrqai kkkknviqsv lqairktvcd weaghepfnd palrgekdpk
      541 sgfdikvprr avgpsstqly mvrtmtesln saellkqlka lglekllhvt hkflrqsyiy
      601 ppllnfgetl qqccdlsqlw freffleltm grriqfpiem smpwiltdhi letkeasmme
      661 yvlysldlyn dsahyaltkf kkqflydeie aevnlcfdqf vykladqifa yykamagsll
      721 ldkrlrseck nqgatiqllq snryetllkq rhvqllgrsi dlnrlitqri saamyrsmel
      781 aigrfesedl tsiveldgli einkmthkll srymtldsfd amfreanhnv sapygritlh
      841 vfwelnydfl pnycyngstn rfvrtvlpfs qefqrdkqpn aqpqylygsk alnlayssiy
      901 snyrnfvgpp hfkvicrllg yqgiavvmee llkvvksllq gtilqyvktl mevmpkicrl
      961 prheygspgi leffhhqlkd iveyaelktv cfqnlrevgn avlfcllieq slsleevcdl
     1021 lhaapfqnil prvhvkeger ldakmkrles kyaplhlvpl ierlgtpqqi aiaregdllt
     1081 kerlccglsm feviltrirs flddpiwrgp lpsngvmhvd ecvefhrlws amqfvycipv
     1141 gtheftveqc fgdglhwagc miivllgqqr rfdvldfcyh llkvqkhdgk deviknvplk
     1201 kmverirkfq ilndeiiail dkylksgdge stpvehvrcf qppihqslas n
//
LOCUS       XP_053911724             361 aa            linear   VRT 09-MAR-2023
DEFINITION  magnesium transporter NIPA2 [Cuculus canorus].
ACCESSION   XP_053911724
VERSION     XP_053911724.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055749.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..361
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..361
                     /product="magnesium transporter NIPA2"
                     /calculated_mol_wt=38971
     Region          8..302
                     /region_name="Mg_trans_NIPA"
                     /note="Magnesium transporter NIPA; pfam05653"
                     /db_xref="CDD:398984"
     CDS             1..361
                     /gene="NIPA2"
                     /coded_by="XM_054055749.1:455..1540"
                     /db_xref="GeneID:104066344"
ORIGIN      
        1 msetrgrydf ciglvlamss sifiggsfil kkkgllrlar kgsmragqgg haylkewlww
       61 agllsmgage vanfaayafa patlvtplga lsvlvsails sfflneklnl hgkigcllsi
      121 lgstvmviha pqeeevetln emshklgdpg fvvfatlvvi vslilifvvg prhgqtnilv
      181 yiticsviga lsvscvkglg iaikelfagk pvlkhplfci lllsliicvs tqinylnral
      241 difntsivtp iyyvifttsv ltcsailfke wqhmaaddii gtfsgfltii vgifllhafk
      301 dvnftlanlp lslrkddrva ngtllstyds fnhdeesspc lgeiqstesl sarrngslsa
      361 f
//
LOCUS       XP_053911732             361 aa            linear   VRT 09-MAR-2023
DEFINITION  magnesium transporter NIPA2 [Cuculus canorus].
ACCESSION   XP_053911732
VERSION     XP_053911732.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055757.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..361
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..361
                     /product="magnesium transporter NIPA2"
                     /calculated_mol_wt=38971
     Region          8..302
                     /region_name="Mg_trans_NIPA"
                     /note="Magnesium transporter NIPA; pfam05653"
                     /db_xref="CDD:398984"
     CDS             1..361
                     /gene="NIPA2"
                     /coded_by="XM_054055757.1:296..1381"
                     /db_xref="GeneID:104066344"
ORIGIN      
        1 msetrgrydf ciglvlamss sifiggsfil kkkgllrlar kgsmragqgg haylkewlww
       61 agllsmgage vanfaayafa patlvtplga lsvlvsails sfflneklnl hgkigcllsi
      121 lgstvmviha pqeeevetln emshklgdpg fvvfatlvvi vslilifvvg prhgqtnilv
      181 yiticsviga lsvscvkglg iaikelfagk pvlkhplfci lllsliicvs tqinylnral
      241 difntsivtp iyyvifttsv ltcsailfke wqhmaaddii gtfsgfltii vgifllhafk
      301 dvnftlanlp lslrkddrva ngtllstyds fnhdeesspc lgeiqstesl sarrngslsa
      361 f
//
LOCUS       XP_053911739             361 aa            linear   VRT 09-MAR-2023
DEFINITION  magnesium transporter NIPA2 [Cuculus canorus].
ACCESSION   XP_053911739
VERSION     XP_053911739.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055764.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..361
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..361
                     /product="magnesium transporter NIPA2"
                     /calculated_mol_wt=38971
     Region          8..302
                     /region_name="Mg_trans_NIPA"
                     /note="Magnesium transporter NIPA; pfam05653"
                     /db_xref="CDD:398984"
     CDS             1..361
                     /gene="NIPA2"
                     /coded_by="XM_054055764.1:469..1554"
                     /db_xref="GeneID:104066344"
ORIGIN      
        1 msetrgrydf ciglvlamss sifiggsfil kkkgllrlar kgsmragqgg haylkewlww
       61 agllsmgage vanfaayafa patlvtplga lsvlvsails sfflneklnl hgkigcllsi
      121 lgstvmviha pqeeevetln emshklgdpg fvvfatlvvi vslilifvvg prhgqtnilv
      181 yiticsviga lsvscvkglg iaikelfagk pvlkhplfci lllsliicvs tqinylnral
      241 difntsivtp iyyvifttsv ltcsailfke wqhmaaddii gtfsgfltii vgifllhafk
      301 dvnftlanlp lslrkddrva ngtllstyds fnhdeesspc lgeiqstesl sarrngslsa
      361 f
//
LOCUS       XP_053911745             223 aa            linear   VRT 09-MAR-2023
DEFINITION  fibronectin type III domain-containing protein 9-like [Cuculus
            canorus].
ACCESSION   XP_053911745
VERSION     XP_053911745.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055770.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..223
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..223
                     /product="fibronectin type III domain-containing protein
                     9-like"
                     /calculated_mol_wt=24755
     Region          2..82
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; smart00060"
                     /db_xref="CDD:214495"
     CDS             1..223
                     /gene="LOC128850780"
                     /coded_by="XM_054055770.1:438..1109"
                     /db_xref="GeneID:128850780"
ORIGIN      
        1 mgiivqnitg ntamviwpkm ascadsfysv myhpnwnnml ssysrksfqk eervptsrss
       61 fvvenltplt tyivcvtcqs anpssdqcrv fntleqdpas asntkkelal giwltssvll
      121 liiaaillyg clhllcrrrr erlqgqngts eqdhrkvwtk stahvsqefs sqgqltqdie
      181 ekhpggiqla tiienpsack epvmltsksl ervptteqcs ain
//
LOCUS       XP_053911758             303 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein C3orf38 homolog [Cuculus canorus].
ACCESSION   XP_053911758
VERSION     XP_053911758.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055783.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..303
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..303
                     /product="uncharacterized protein C3orf38 homolog"
                     /calculated_mol_wt=34354
     Region          6..271
                     /region_name="DUF4518"
                     /note="Domain of unknown function (DUF4518); pfam15008"
                     /db_xref="CDD:464440"
     CDS             1..303
                     /gene="C1H3orf38"
                     /coded_by="XM_054055783.1:70..981"
                     /db_xref="GeneID:104056011"
ORIGIN      
        1 maspglsere ragcrellel lrteellalt dtvtnrmvhp esrqeaihai lvysqsaeel
       61 lkrrkvyrei ifkylaaqei pvppssekhq lidcvklyws gklptcases eekkthaesh
      121 gerqkspqdh ihnlgeefcq wffellnsqh plgvkseegw gpqhfwedak mklcyntlek
      181 nmeeyvgaem vslrllslvk deyilfnpnl hsnglkcams phglvlvava gtvhrdntcl
      241 gifeqifgli scpvrentwk ikvvnlkivg qnamgpgmqi ekpslkyean qlqalydgke
      301 ltv
//
LOCUS       XP_009555120             348 aa            linear   VRT 09-MAR-2023
DEFINITION  tryptophan--tRNA ligase, mitochondrial isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009555120
VERSION     XP_009555120.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556825.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555120.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..348
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..348
                     /product="tryptophan--tRNA ligase, mitochondrial isoform
                     X1"
                     /calculated_mol_wt=38472
     Region          22..347
                     /region_name="PRK00927"
                     /note="tryptophanyl-tRNA synthetase; Reviewed"
                     /db_xref="CDD:234866"
     CDS             1..348
                     /gene="WARS2"
                     /coded_by="XM_009556825.2:1405..2451"
                     /db_xref="GeneID:104055665"
ORIGIN      
        1 matpsglira lhrgtlgqnm vmdrifsgiq ptgtphlgny lgaiqnwvnl qeecnsvlys
       61 imdmhsltmp kepadlrqni ldttaailac gidpkkcflf rqslvpehae lawilgcitn
      121 vprllrlpqw kmkrasqnne gtvglltypv lqaadillyk sthvpvgedq ilhlelaqdi
      181 aqhfnkkyge ffpvpkails ttkkikslrd ptakmsksdp qklatvniad spdeivlklr
      241 kavtdftsev tydpdgrpgv snlvsihaav tglsikevlh qsagldtaqy kmvvaeaviq
      301 kfapirneik klqedkshll kvlengaeka kelaapiyqe irrlvgfq
//
LOCUS       XP_053911779             343 aa            linear   VRT 09-MAR-2023
DEFINITION  tryptophan--tRNA ligase, mitochondrial isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053911779
VERSION     XP_053911779.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055804.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..343
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..343
                     /product="tryptophan--tRNA ligase, mitochondrial isoform
                     X2"
                     /calculated_mol_wt=38083
     Region          17..342
                     /region_name="PRK00927"
                     /note="tryptophanyl-tRNA synthetase; Reviewed"
                     /db_xref="CDD:234866"
     CDS             1..343
                     /gene="WARS2"
                     /coded_by="XM_054055804.1:12..1043"
                     /db_xref="GeneID:104055665"
ORIGIN      
        1 mntligvemr qaqnmvmdri fsgiqptgtp hlgnylgaiq nwvnlqeecn svlysimdmh
       61 sltmpkepad lrqnildtta ailacgidpk kcflfrqslv pehaelawil gcitnvprll
      121 rlpqwkmkra sqnnegtvgl ltypvlqaad illyksthvp vgedqilhle laqdiaqhfn
      181 kkygeffpvp kailsttkki kslrdptakm sksdpqklat vniadspdei vlklrkavtd
      241 ftsevtydpd grpgvsnlvs ihaavtglsi kevlhqsagl dtaqykmvva eaviqkfapi
      301 rneikklqed kshllkvlen gaekakelaa piyqeirrlv gfq
//
LOCUS       XP_053911789             697 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase RNF6 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911789
VERSION     XP_053911789.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055814.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..697
                     /product="E3 ubiquitin-protein ligase RNF6 isoform X1"
                     /calculated_mol_wt=78272
     Region          642..693
                     /region_name="RING-H2_RNF6"
                     /note="RING finger, H2 subclass, found in E3
                     ubiquitin-protein ligase RNF6 and similar proteins;
                     cd16673"
                     /db_xref="CDD:438335"
     CDS             1..697
                     /gene="RNF6"
                     /coded_by="XM_054055814.1:1268..3361"
                     /db_xref="GeneID:104064157"
ORIGIN      
        1 mgwkmrrprm hqngshkehk kgqpgtsmdr srhcagsgne qtssqehsre derqrqlerl
       61 sreeayyqfi nelneedyrl mrdrnllgtp geitaeelhq rlegakerla sqgdldnreg
      121 egrtvgdsdv lgensngdsl lewlntfrrt gnatrsgqsg nqtwravsrt npnsgefrfs
      181 leininhehn sfetageenv gidssrmhse rrhqrpvspl aprtrsrtar eanseassta
      241 rtrsvrssva qsseaashpv sgrlrsrtre vtgpsritta rnnsaatgeq rempergtst
      301 gvtrgrartn irmntnqrle ilrlrstlss rsrsplqrqg dtahfeergq rqdrnaqqvn
      361 rsrrqtaqps pqpaeeqarg ntqgpqlssv dpslgvtlee eessrpvasv rrhptitldl
      421 qvrrirpgen rdrdsiasrt rsrvgmaent vtfesdsggf rrtisrsera girtyvstir
      481 iplrrisetg lgepssvalr silrqimtgf gelsslmete snseaqrdgh hlpdvqseqn
      541 nlssannssd psgisprngh svegsretng qirnnenqdn rqsqdannlv engtlpilrl
      601 ahffllnedd dddrlrgltk eqidnlstrn ygdihtenei sktcsvcine yvtgnklrql
      661 pcmhefhihc idrwlsenst cpicrqpvlg snatdng
//
LOCUS       XP_053911795             670 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase RNF6 isoform X2 [Cuculus canorus].
ACCESSION   XP_053911795
VERSION     XP_053911795.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055820.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..670
                     /product="E3 ubiquitin-protein ligase RNF6 isoform X2"
                     /calculated_mol_wt=75102
     Region          615..666
                     /region_name="RING-H2_RNF6"
                     /note="RING finger, H2 subclass, found in E3
                     ubiquitin-protein ligase RNF6 and similar proteins;
                     cd16673"
                     /db_xref="CDD:438335"
     CDS             1..670
                     /gene="RNF6"
                     /coded_by="XM_054055820.1:144..2156"
                     /db_xref="GeneID:104064157"
ORIGIN      
        1 mdrsrhcags gneqtssqeh srederqrql erlsreeayy qfinelneed yrlmrdrnll
       61 gtpgeitaee lhqrlegake rlasqgdldn regegrtvgd sdvlgensng dsllewlntf
      121 rrtgnatrsg qsgnqtwrav srtnpnsgef rfsleininh ehnsfetage envgidssrm
      181 hserrhqrpv splaprtrsr tareanseas startrsvrs svaqsseaas hpvsgrlrsr
      241 trevtgpsri ttarnnsaat geqremperg tstgvtrgra rtnirmntnq rleilrlrst
      301 lssrsrsplq rqgdtahfee rgqrqdrnaq qvnrsrrqta qpspqpaeeq argntqgpql
      361 ssvdpslgvt leeeessrpv asvrrhptit ldlqvrrirp genrdrdsia srtrsrvgma
      421 entvtfesds ggfrrtisrs eragirtyvs tiriplrris etglgepssv alrsilrqim
      481 tgfgelsslm etesnseaqr dghhlpdvqs eqnnlssann ssdpsgispr nghsvegsre
      541 tngqirnnen qdnrqsqdan nlvengtlpi lrlahfflln edddddrlrg ltkeqidnls
      601 trnygdihte neisktcsvc ineyvtgnkl rqlpcmhefh ihcidrwlse nstcpicrqp
      661 vlgsnatdng
//
LOCUS       XP_053911803             154 aa            linear   VRT 09-MAR-2023
DEFINITION  pleckstrin homology-like domain family A member 1 [Cuculus
            canorus].
ACCESSION   XP_053911803
VERSION     XP_053911803.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055828.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..154
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..154
                     /product="pleckstrin homology-like domain family A member
                     1"
                     /calculated_mol_wt=17357
     Region          9..113
                     /region_name="PH"
                     /note="Pleckstrin homology domain; smart00233"
                     /db_xref="CDD:214574"
     CDS             1..154
                     /gene="PHLDA1"
                     /coded_by="XM_054055828.1:242..706"
                     /db_xref="GeneID:104061144"
ORIGIN      
        1 mlesgckavk egvlekrsdg llqlwkkkrc ilteegllli ppkqqpppqq qqqeqpplpa
       61 epaakikelh fsnmktvdcv erkgkyvyft vvmaegkeid frcaqeqgwn aaitlqmvqy
      121 knrqailavr strqkqqhla qphgprlrsa snsa
//
LOCUS       XP_053911812             512 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 117 [Cuculus canorus].
ACCESSION   XP_053911812
VERSION     XP_053911812.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055837.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..512
                     /product="transmembrane protein 117"
                     /calculated_mol_wt=59641
     Region          4..416
                     /region_name="TMEM117"
                     /note="TMEM117 protein family; pfam15113"
                     /db_xref="CDD:434469"
     CDS             1..512
                     /gene="TMEM117"
                     /coded_by="XM_054055837.1:100..1638"
                     /db_xref="GeneID:104062407"
ORIGIN      
        1 mdkdfryyfq hpwsrlvvay lviffnflif aedpvshsqt eanvivvgnc fsfvtnkype
       61 gggwrflkvf lwllailtgl iagkflfhqr lfgqllrlkm fredhgswmt mffstilflf
      121 ifshiynlfl imagnmsayi itdfmgirne nfmkvaavgt wmgdfvtawm vtdmmlqdkp
      181 ypdwgksara fwkkgnirii lfwtvlftlt svvvlvittd wiswdklnrg flpsdevsra
      241 flasfilvfd llivmqdwef phfmgdvevn lpglpsahmq fkvpyfqkif keeyhihitg
      301 kwfnygiifl vlildlnmwk nqifykphey gqyigpgqki ytvkdseslk dlnrtklswe
      361 wrsnntnplt nrtyaegdmf lhsrfigssl dvkclafips llafalfgff iwffgrfqkt
      421 dqgmenldks ytrmkrksps dmgmtrentq vlveeplsfq ephlvsiksd lseivfnssl
      481 ltsenlnaql neqdsplqpv pessvpksnp vt
//
LOCUS       XP_053911821             361 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: P2Y purinoceptor 1-like [Cuculus canorus].
ACCESSION   XP_053911821
VERSION     XP_053911821.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055846.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..361
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..361
                     /product="LOW QUALITY PROTEIN: P2Y purinoceptor 1-like"
                     /calculated_mol_wt=41079
     Region          51..331
                     /region_name="7tmA_purinoceptor-like"
                     /note="purinoceptor and its related proteins, member of
                     the class A family of seven-transmembrane G
                     protein-coupled receptors; cd14982"
                     /db_xref="CDD:341318"
     Region          51..78
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:341318"
     Region          85..110
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:341318"
     Site            order(106,109..110,123..128,130..131,134..135,176..177,
                     179..183,198..201,210,213..215,217..219,221..222,271,
                     274..275,277..278,281,298..299,301..303,306,309..310)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:341318"
     Site            order(109,123,127..128,131..132,135,176,179..180,182..183,
                     198..201,211,214..215,218,277..278,281,298..299,301..302,
                     306)
                     /site_type="other"
                     /note="temp lbs"
                     /db_xref="CDD:341318"
     Region          123..153
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:341318"
     Region          165..183
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:341318"
     Region          210..239
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:341318"
     Region          251..281
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:341318"
     Region          299..324
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:341318"
     CDS             1..361
                     /gene="LOC128850830"
                     /coded_by="XM_054055846.1:1..1086"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /db_xref="GeneID:128850830"
ORIGIN      
        1 mkrkniarnl yfcktgnsnl sqtamlhgkm mngtcttsic hrnpeleryc yllilvcvft
       61 livgflgnil alqhylycmk twttnticlf nlalcdftwt lmapfsvfyg lqnlsdyssq
      121 afyqiiklff siniygsvyf ltltsfdryv gavhpitslt wwnkekaifx vlwifivias
      181 mpeiyytvta grqrdtvdfl dgtvvplqfa vpftlskfal rflipvivis tcymltlkal
      241 lelskhqqrr nrlgrlllli sgamivfavs fipyhvmmmv ipiyrttcqp pcgnistlsa
      301 iykvtsifcs inicldpiif tvanktryqr ikaikchpkc qsrccltgsv kditlsprim
      361 t
//
LOCUS       XP_053911832             291 aa            linear   VRT 09-MAR-2023
DEFINITION  kidney mitochondrial carrier protein 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053911832
VERSION     XP_053911832.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055857.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..291
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..291
                     /product="kidney mitochondrial carrier protein 1 isoform
                     X1"
                     /calculated_mol_wt=32384
     Region          9..289
                     /region_name="PTZ00169"
                     /note="ADP/ATP transporter on adenylate translocase;
                     Provisional"
                     /db_xref="CDD:240302"
     Region          199..289
                     /region_name="Mito_carr"
                     /note="Mitochondrial carrier protein; pfam00153"
                     /db_xref="CDD:395101"
     CDS             1..291
                     /gene="SLC25A30"
                     /coded_by="XM_054055857.1:117..992"
                     /db_xref="GeneID:104056507"
ORIGIN      
        1 msalnwkpfi ygglasitae cgtfpidltk trlqvqgqvn darykeiryr gmvhalvric
       61 reeglkalys giapamlrqa sygtikigty qslkrvfveh pedetlminv lcgilsgvis
      121 ssianptdvl kirmqaqgsv iqggmmgnfl qiyqnegtkg lwkgvsltaq raavvvgvel
      181 pvydltkkhi imsglmgdtv ythflssftc glagalasnp idvvrtrmmn qksqqygghs
      241 nykgtldcll qtwknegffa lykgfwpnwl rlgpwniiff ltyeqlkkld f
//
LOCUS       XP_053911836             291 aa            linear   VRT 09-MAR-2023
DEFINITION  kidney mitochondrial carrier protein 1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053911836
VERSION     XP_053911836.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055861.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..291
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..291
                     /product="kidney mitochondrial carrier protein 1 isoform
                     X2"
                     /calculated_mol_wt=32412
     Region          9..289
                     /region_name="PTZ00169"
                     /note="ADP/ATP transporter on adenylate translocase;
                     Provisional"
                     /db_xref="CDD:240302"
     Region          199..289
                     /region_name="Mito_carr"
                     /note="Mitochondrial carrier protein; pfam00153"
                     /db_xref="CDD:395101"
     CDS             1..291
                     /gene="SLC25A30"
                     /coded_by="XM_054055861.1:122..997"
                     /db_xref="GeneID:104056507"
ORIGIN      
        1 msalnwkpfi ygglasitae cgtfpidltk trlqvqgqvn darykeiryr gmvhalvric
       61 reeglkalys giapamlrqa sygtikigty qslkrvfveh pedetlminv lcgilsgvis
      121 ssianptdvl kirmqaqgsv iqggmmgnfl qiyqnegtkg lwkaisltaq raavvvgvel
      181 pvydltkkhi imsglmgdtv ythflssftc glagalasnp idvvrtrmmn qksqqygghs
      241 nykgtldcll qtwknegffa lykgfwpnwl rlgpwniiff ltyeqlkkld f
//
LOCUS       XP_053911839             742 aa            linear   VRT 09-MAR-2023
DEFINITION  prestin [Cuculus canorus].
ACCESSION   XP_053911839
VERSION     XP_053911839.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055864.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..742
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..742
                     /product="prestin"
                     /calculated_mol_wt=81151
     Region          67..724
                     /region_name="PRK11660"
                     /note="putative transporter; Provisional; cl46980"
                     /db_xref="CDD:481320"
     CDS             1..742
                     /gene="SLC26A5"
                     /coded_by="XM_054055864.1:195..2423"
                     /db_xref="GeneID:104061751"
ORIGIN      
        1 mehaqeheac leqtqkycve rpiynqellq gklhrrertp qtlsqkiahs crcsskkaks
       61 hlysflpilk wlprypvkey llgdiisgis tgvmqlpqgl ayallaavpp vfglyssfyp
      121 vflytffgts khisigtfav ismmvggvav rqvpdeiisv gynstnstds leyysardak
      181 rvqiavtlaf lsgiiqlclg llrfgfvaiy lteplvrgft taaavhvfts qlkyllgikt
      241 krysgplsvv ysiaavlski tttniaaliv gltcivlllv gkeinlrfkk klpvpipmei
      301 ivviigtgvs agmnlsesyr vdvvgnipqg lrppavpeiq lipavfvdai aiaivgfsma
      361 vsmakifalk hgytidgnqe lialgicnsv gsffqsfsvt csmsrslvqe stggktqiag
      421 alssimvllv ivaigylfep lpqtvlaaiv mvnlkgmfkq fgdvahfwkt skielaiwvv
      481 afvaslflgl dyglltavaf amitviyrtq spqyrilgqi pgtdiycdve eyeevkeypg
      541 ikifqanasl yfansdsyts alkkktgvdp cailaarrka qkrhareika anklrkkavl
      601 klvnsstndv easvkheian delpvngkfa sedasvqdts pdehehfvep kpnihslild
      661 ftpvnfvdsv gaktlksiik eyrevgvcvc iascsgpali eltrlnffds tvtrellfhs
      721 ihdavlacqv kdrsvsqadv dl
//
LOCUS       XP_053911846             742 aa            linear   VRT 09-MAR-2023
DEFINITION  prestin [Cuculus canorus].
ACCESSION   XP_053911846
VERSION     XP_053911846.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055871.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..742
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..742
                     /product="prestin"
                     /calculated_mol_wt=81151
     Region          67..724
                     /region_name="PRK11660"
                     /note="putative transporter; Provisional; cl46980"
                     /db_xref="CDD:481320"
     CDS             1..742
                     /gene="SLC26A5"
                     /coded_by="XM_054055871.1:337..2565"
                     /db_xref="GeneID:104061751"
ORIGIN      
        1 mehaqeheac leqtqkycve rpiynqellq gklhrrertp qtlsqkiahs crcsskkaks
       61 hlysflpilk wlprypvkey llgdiisgis tgvmqlpqgl ayallaavpp vfglyssfyp
      121 vflytffgts khisigtfav ismmvggvav rqvpdeiisv gynstnstds leyysardak
      181 rvqiavtlaf lsgiiqlclg llrfgfvaiy lteplvrgft taaavhvfts qlkyllgikt
      241 krysgplsvv ysiaavlski tttniaaliv gltcivlllv gkeinlrfkk klpvpipmei
      301 ivviigtgvs agmnlsesyr vdvvgnipqg lrppavpeiq lipavfvdai aiaivgfsma
      361 vsmakifalk hgytidgnqe lialgicnsv gsffqsfsvt csmsrslvqe stggktqiag
      421 alssimvllv ivaigylfep lpqtvlaaiv mvnlkgmfkq fgdvahfwkt skielaiwvv
      481 afvaslflgl dyglltavaf amitviyrtq spqyrilgqi pgtdiycdve eyeevkeypg
      541 ikifqanasl yfansdsyts alkkktgvdp cailaarrka qkrhareika anklrkkavl
      601 klvnsstndv easvkheian delpvngkfa sedasvqdts pdehehfvep kpnihslild
      661 ftpvnfvdsv gaktlksiik eyrevgvcvc iascsgpali eltrlnffds tvtrellfhs
      721 ihdavlacqv kdrsvsqadv dl
//
LOCUS       XP_053911854             742 aa            linear   VRT 09-MAR-2023
DEFINITION  prestin [Cuculus canorus].
ACCESSION   XP_053911854
VERSION     XP_053911854.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055879.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..742
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..742
                     /product="prestin"
                     /calculated_mol_wt=81151
     Region          67..724
                     /region_name="PRK11660"
                     /note="putative transporter; Provisional; cl46980"
                     /db_xref="CDD:481320"
     CDS             1..742
                     /gene="SLC26A5"
                     /coded_by="XM_054055879.1:320..2548"
                     /db_xref="GeneID:104061751"
ORIGIN      
        1 mehaqeheac leqtqkycve rpiynqellq gklhrrertp qtlsqkiahs crcsskkaks
       61 hlysflpilk wlprypvkey llgdiisgis tgvmqlpqgl ayallaavpp vfglyssfyp
      121 vflytffgts khisigtfav ismmvggvav rqvpdeiisv gynstnstds leyysardak
      181 rvqiavtlaf lsgiiqlclg llrfgfvaiy lteplvrgft taaavhvfts qlkyllgikt
      241 krysgplsvv ysiaavlski tttniaaliv gltcivlllv gkeinlrfkk klpvpipmei
      301 ivviigtgvs agmnlsesyr vdvvgnipqg lrppavpeiq lipavfvdai aiaivgfsma
      361 vsmakifalk hgytidgnqe lialgicnsv gsffqsfsvt csmsrslvqe stggktqiag
      421 alssimvllv ivaigylfep lpqtvlaaiv mvnlkgmfkq fgdvahfwkt skielaiwvv
      481 afvaslflgl dyglltavaf amitviyrtq spqyrilgqi pgtdiycdve eyeevkeypg
      541 ikifqanasl yfansdsyts alkkktgvdp cailaarrka qkrhareika anklrkkavl
      601 klvnsstndv easvkheian delpvngkfa sedasvqdts pdehehfvep kpnihslild
      661 ftpvnfvdsv gaktlksiik eyrevgvcvc iascsgpali eltrlnffds tvtrellfhs
      721 ihdavlacqv kdrsvsqadv dl
//
LOCUS       XP_053911857             742 aa            linear   VRT 09-MAR-2023
DEFINITION  prestin [Cuculus canorus].
ACCESSION   XP_053911857
VERSION     XP_053911857.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055882.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..742
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..742
                     /product="prestin"
                     /calculated_mol_wt=81151
     Region          67..724
                     /region_name="PRK11660"
                     /note="putative transporter; Provisional; cl46980"
                     /db_xref="CDD:481320"
     CDS             1..742
                     /gene="SLC26A5"
                     /coded_by="XM_054055882.1:205..2433"
                     /db_xref="GeneID:104061751"
ORIGIN      
        1 mehaqeheac leqtqkycve rpiynqellq gklhrrertp qtlsqkiahs crcsskkaks
       61 hlysflpilk wlprypvkey llgdiisgis tgvmqlpqgl ayallaavpp vfglyssfyp
      121 vflytffgts khisigtfav ismmvggvav rqvpdeiisv gynstnstds leyysardak
      181 rvqiavtlaf lsgiiqlclg llrfgfvaiy lteplvrgft taaavhvfts qlkyllgikt
      241 krysgplsvv ysiaavlski tttniaaliv gltcivlllv gkeinlrfkk klpvpipmei
      301 ivviigtgvs agmnlsesyr vdvvgnipqg lrppavpeiq lipavfvdai aiaivgfsma
      361 vsmakifalk hgytidgnqe lialgicnsv gsffqsfsvt csmsrslvqe stggktqiag
      421 alssimvllv ivaigylfep lpqtvlaaiv mvnlkgmfkq fgdvahfwkt skielaiwvv
      481 afvaslflgl dyglltavaf amitviyrtq spqyrilgqi pgtdiycdve eyeevkeypg
      541 ikifqanasl yfansdsyts alkkktgvdp cailaarrka qkrhareika anklrkkavl
      601 klvnsstndv easvkheian delpvngkfa sedasvqdts pdehehfvep kpnihslild
      661 ftpvnfvdsv gaktlksiik eyrevgvcvc iascsgpali eltrlnffds tvtrellfhs
      721 ihdavlacqv kdrsvsqadv dl
//
LOCUS       XP_053911867             619 aa            linear   VRT 09-MAR-2023
DEFINITION  dnaJ homolog subfamily C member 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911867
VERSION     XP_053911867.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055892.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..619
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..619
                     /product="dnaJ homolog subfamily C member 2 isoform X1"
                     /calculated_mol_wt=71320
     Region          73..366
                     /region_name="ZUO1"
                     /note="Ribosome-associated chaperone zuotin [Translation,
                     ribosomal structure and biogenesis / Posttranslational
                     modification, protein turnover, chaperones]; COG5269"
                     /db_xref="CDD:227594"
     Region          342..418
                     /region_name="RAC_head"
                     /note="Ribosome-associated complex head domain; pfam16717"
                     /db_xref="CDD:435537"
     Region          451..504
                     /region_name="SANT"
                     /note="'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains.
                     Tandem copies of the domain bind telomeric DNA tandem
                     repeatsas part of the capping complex. Binding is sequence
                     dependent for repeats which contain the G/C rich motif
                     [C2-3 A (CA)1-6]. The domain is...; cd00167"
                     /db_xref="CDD:238096"
     Site            order(452,492..493,495..496,498..500,502..504)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238096"
     Region          551..598
                     /region_name="SANT"
                     /note="'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains.
                     Tandem copies of the domain bind telomeric DNA tandem
                     repeatsas part of the capping complex. Binding is sequence
                     dependent for repeats which contain the G/C rich motif
                     [C2-3 A (CA)1-6]. The domain is...; cd00167"
                     /db_xref="CDD:238096"
     Site            order(552,585..586,588..589,591..593,595..597)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238096"
     CDS             1..619
                     /gene="DNAJC2"
                     /coded_by="XM_054055892.1:136..1995"
                     /db_xref="GeneID:104061749"
ORIGIN      
        1 mlrearhgqa tgvtapllga svlcqvepvg rwfeafikrr ninvsasfqe ledekelsee
       61 sgdeelqlee fpmlktldpk dwknqdhyav lglghiryra tqkqikaahk smvlkhhpdk
      121 rkaageqige gdndyftcit kayeilsdpv krrafnsidp tfdnsvpsks eakenffevf
      181 spvfernarw snkknvpklg dmsssfeevd afysfwynfd swrefsylde eekekaecrd
      241 errwiekqnr aaralrkkee mnrirtlvdn ayscdprikk fkeeekakke aekkakveak
      301 rkeqeakekq rqaeieaarl akekeeeevr qqalvakkek eiqkkaikke rqklrttckn
      361 wnyfsdnead cvkmmeevek lcdrlelasl qclnealtst treggkaavv kqieeineqi
      421 rrekeeaear mrqatkssek attgggggsk nwpeddlqll ikavnlfpag tnsrwevian
      481 ymnlhstagi krtakdvink akslqkldph qkddinkkaf dkfkkehgvv pqmdsaapse
      541 rfegssldss pwtteeqkll eqalktypvn tperwekiaa avpgrskkdc mkrykelvem
      601 vkakkaaqeq vmnatkvkk
//
LOCUS       XP_053911875             547 aa            linear   VRT 09-MAR-2023
DEFINITION  dnaJ homolog subfamily C member 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053911875
VERSION     XP_053911875.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055900.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..547
                     /product="dnaJ homolog subfamily C member 2 isoform X2"
                     /calculated_mol_wt=63219
     Region          1..294
                     /region_name="ZUO1"
                     /note="Ribosome-associated chaperone zuotin [Translation,
                     ribosomal structure and biogenesis / Posttranslational
                     modification, protein turnover, chaperones]; COG5269"
                     /db_xref="CDD:227594"
     Region          270..346
                     /region_name="RAC_head"
                     /note="Ribosome-associated complex head domain; pfam16717"
                     /db_xref="CDD:435537"
     Region          379..432
                     /region_name="SANT"
                     /note="'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains.
                     Tandem copies of the domain bind telomeric DNA tandem
                     repeatsas part of the capping complex. Binding is sequence
                     dependent for repeats which contain the G/C rich motif
                     [C2-3 A (CA)1-6]. The domain is...; cd00167"
                     /db_xref="CDD:238096"
     Site            order(380,420..421,423..424,426..428,430..432)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238096"
     Region          479..526
                     /region_name="SANT"
                     /note="'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains.
                     Tandem copies of the domain bind telomeric DNA tandem
                     repeatsas part of the capping complex. Binding is sequence
                     dependent for repeats which contain the G/C rich motif
                     [C2-3 A (CA)1-6]. The domain is...; cd00167"
                     /db_xref="CDD:238096"
     Site            order(480,513..514,516..517,519..521,523..525)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238096"
     CDS             1..547
                     /gene="DNAJC2"
                     /coded_by="XM_054055900.1:248..1891"
                     /db_xref="GeneID:104061749"
ORIGIN      
        1 mlktldpkdw knqdhyavlg lghiryratq kqikaahksm vlkhhpdkrk aageqigegd
       61 ndyftcitka yeilsdpvkr rafnsidptf dnsvpsksea kenffevfsp vfernarwsn
      121 kknvpklgdm sssfeevdaf ysfwynfdsw refsyldeee kekaecrder rwiekqnraa
      181 ralrkkeemn rirtlvdnay scdprikkfk eeekakkeae kkakveakrk eqeakekqrq
      241 aeieaarlak ekeeeevrqq alvakkekei qkkaikkerq klrttcknwn yfsdneadcv
      301 kmmeeveklc drlelaslqc lnealtsttr eggkaavvkq ieeineqirr ekeeaearmr
      361 qatkssekat tgggggsknw peddlqllik avnlfpagtn srwevianym nlhstagikr
      421 takdvinkak slqkldphqk ddinkkafdk fkkehgvvpq mdsaapserf egssldsspw
      481 tteeqklleq alktypvntp erwekiaaav pgrskkdcmk rykelvemvk akkaaqeqvm
      541 natkvkk
//
LOCUS       XP_053911887             487 aa            linear   VRT 09-MAR-2023
DEFINITION  mitochondrial-processing peptidase subunit beta isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053911887
VERSION     XP_053911887.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055912.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..487
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..487
                     /product="mitochondrial-processing peptidase subunit beta
                     isoform X1"
                     /calculated_mol_wt=53723
     Region          44..473
                     /region_name="PqqL"
                     /note="Predicted Zn-dependent peptidase, M16 family
                     [General function prediction only]; COG0612"
                     /db_xref="CDD:440377"
     CDS             1..487
                     /gene="PMPCB"
                     /coded_by="XM_054055912.1:63..1526"
                     /db_xref="GeneID:104061754"
ORIGIN      
        1 maasaarlaa rrlylprppr lvrasvsgar cvhvgtgrlr askaaaevil nvpetrvspl
       61 gnglqvased sglstctvgl widagsryen eknngtahfl ehmafkgtkk rsqldlelei
      121 enmgahlnay tsreqtvyya kafskdlpka veiladiiqn stlgeaeier ergvilremq
      181 evetnlqevv fdylhatayq ntalgrtilg pteniksinr ndlveyitth ykgprmvlaa
      241 aggvchdell dlakchfgnl psapegglpp lppcsftgse irirddkmpl ahlaiaveaa
      301 gwahpdtipl mvantlignw drsfgggvqn lssklaqiac hgnlchsfqs fntcytdtgl
      361 wglymvceps tiqdmvhfvq rewirlctsv tenevarakn llktnmllql dgstpicedi
      421 grqmlcykrr ipipeleari eaidaqtire vctkyiynkn pavaavgpie qlpeynkics
      481 gmywlre
//
LOCUS       XP_053911893             486 aa            linear   VRT 09-MAR-2023
DEFINITION  mitochondrial-processing peptidase subunit beta isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053911893
VERSION     XP_053911893.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055918.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..486
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..486
                     /product="mitochondrial-processing peptidase subunit beta
                     isoform X2"
                     /calculated_mol_wt=53595
     Region          44..472
                     /region_name="PqqL"
                     /note="Predicted Zn-dependent peptidase, M16 family
                     [General function prediction only]; COG0612"
                     /db_xref="CDD:440377"
     CDS             1..486
                     /gene="PMPCB"
                     /coded_by="XM_054055918.1:62..1522"
                     /db_xref="GeneID:104061754"
ORIGIN      
        1 maasaarlaa rrlylprppr lvrasvsgar cvhvgtgrlr askaaaevil nvpetrvspl
       61 gnglqvased sglstctvgl widagsryen eknngtahfl ehmafkgtkk rsqldlelei
      121 enmgahlnay tsreqtvyya kafskdlpka veiladiiqn stlgeaeier ergvilremq
      181 evetnlqevv fdylhatayq ntalgrtilg pteniksinr ndlveyitth ykgprmvlaa
      241 aggvchdell dlakchfgnl psapegglpp lppcsftgse irirddkmpl ahlaiaveaa
      301 gwahpdtipl mvantlignw drsfgggvnl ssklaqiach gnlchsfqsf ntcytdtglw
      361 glymvcepst iqdmvhfvqr ewirlctsvt enevaraknl lktnmllqld gstpicedig
      421 rqmlcykrri pipelearie aidaqtirev ctkyiynknp avaavgpieq lpeynkicsg
      481 mywlre
//
LOCUS       XP_009562018             433 aa            linear   VRT 09-MAR-2023
DEFINITION  26S proteasome regulatory subunit 7 [Cuculus canorus].
ACCESSION   XP_009562018
VERSION     XP_009562018.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563723.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..433
                     /product="26S proteasome regulatory subunit 7"
                     /calculated_mol_wt=48531
     Region          44..430
                     /region_name="PRK03992"
                     /note="proteasome-activating nucleotidase; Provisional"
                     /db_xref="CDD:179699"
     CDS             1..433
                     /gene="PSMC2"
                     /coded_by="XM_009563723.2:137..1438"
                     /db_xref="GeneID:104061750"
ORIGIN      
        1 mpdylgadqr ktkeeekedk piraldegdi allktygqst ysrqikqved diqqllkkin
       61 eltgikesdt glappalwdl aadkqtlqse qplqvarctk iinadsedpk yiinvkqfak
      121 fvvdlsdqva ptdieegmrv gvdrnkyqih iplppkidpt vtmmqveekp dvtysdvggc
      181 keqieklrev vetpllhper fvnlgieppk gvllfgppgt gktlcarava nrtdacfirv
      241 igselvqkyv gegarmvrel femartkkac liffdeidai ggarfddgag gdnevqrtml
      301 elinqldgfd prgnikvlma tnrpdtldpa lmrpgrldrk iefslpdleg rthifkihar
      361 smsverdirf ellarlcpns tgaeirsvct eagmfairar rkiatekdfl eavnkviksy
      421 akfsatprym tyn
//
LOCUS       XP_053911913             398 aa            linear   VRT 09-MAR-2023
DEFINITION  dTDP-D-glucose 4,6-dehydratase [Cuculus canorus].
ACCESSION   XP_053911913
VERSION     XP_053911913.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055938.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..398
                     /product="dTDP-D-glucose 4,6-dehydratase"
                     /calculated_mol_wt=45051
     Region          56..373
                     /region_name="dTDP_GD_SDR_e"
                     /note="dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs;
                     cd05246"
                     /db_xref="CDD:187557"
     Site            order(62,64..67,88..91,93..94,113..115,136..138,140,155,
                     178..180,204,208,231..234)
                     /site_type="other"
                     /note="NAD binding site [chemical binding]"
                     /db_xref="CDD:187557"
     Site            order(140..142,180..182,204,231..233,242..244,247..248,
                     259..261,266,268,307,333,336,340)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:187557"
     Site            order(144,146,149..150,153,157..158,161,165,168,186,195,
                     197..198,200..203,206,209..210,213..214,217..218,220..222,
                     337)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:187557"
     Site            order(156,180,204,208)
                     /site_type="active"
                     /db_xref="CDD:187557"
     CDS             1..398
                     /gene="TGDS"
                     /coded_by="XM_054055938.1:95..1291"
                     /db_xref="GeneID:104054876"
ORIGIN      
        1 mlvlavvpre kpgrttasip pcacaalrrg ggaggcrkar rmsglmcgae pqlfekrvlv
       61 tggagfiash vvvslvknyp nyliinldkl dycaslknle tvsekenykf iqgdicepdf
      121 ikqlfkteki divlhfaaqt hvdlsfwhal eftyvnvygt hvlvaaahea nvekfvyvst
      181 devyggstde efdesspkrp tnpyasskaa aecfvqsywe ryqfpvvitr ssnvygphqy
      241 pekvipkfis llqqnrkcci hgsglqrrnf lyaadvveaf ltvlkegkpg eiynigtnfe
      301 msiaqlakel ihlikktsse semehwmdyv kdrptndlry pmnsekmhsl gwrpkvpwke
      361 gikktiewyk enfqnwknle kalepfpvte pfaqlssp
//
LOCUS       XP_053911928             138 aa            linear   VRT 09-MAR-2023
DEFINITION  vesicle transport protein GOT1B isoform X1 [Cuculus canorus].
ACCESSION   XP_053911928
VERSION     XP_053911928.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055953.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..138
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..138
                     /product="vesicle transport protein GOT1B isoform X1"
                     /calculated_mol_wt=15216
     Region          4..116
                     /region_name="Got1"
                     /note="Got1/Sft2-like family; cl02130"
                     /db_xref="CDD:470475"
     CDS             1..138
                     /gene="GOLT1B"
                     /coded_by="XM_054055953.1:112..528"
                     /db_xref="GeneID:104058533"
ORIGIN      
        1 mislsdtqki gmgltgfgvf flffgmilff dkallaignv lfvaglsfvi glertfrfff
       61 qkhkmkatgf flggvlivli gwpligmile iygffllfrg ffpvvvgfir rvpvlgylln
      121 lpgisslvdk vgesnnmv
//
LOCUS       XP_053911930             128 aa            linear   VRT 09-MAR-2023
DEFINITION  vesicle transport protein GOT1B isoform X2 [Cuculus canorus].
ACCESSION   XP_053911930
VERSION     XP_053911930.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055955.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..128
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..128
                     /product="vesicle transport protein GOT1B isoform X2"
                     /calculated_mol_wt=14127
     Region          4..116
                     /region_name="Got1"
                     /note="Got1/Sft2-like family; cl02130"
                     /db_xref="CDD:470475"
     CDS             1..128
                     /gene="GOLT1B"
                     /coded_by="XM_054055955.1:112..498"
                     /db_xref="GeneID:104058533"
ORIGIN      
        1 mislsdtqki gmgltgfgvf flffgmilff dkallaignv lfvaglsfvi glertfrfff
       61 qkhkmkatgf flggvlivli gwpligmile iygffllfrg ffpvvvgfir rvpvlgylln
      121 lpgisspt
//
LOCUS       XP_053911932             973 aa            linear   VRT 09-MAR-2023
DEFINITION  CRACD-like protein [Cuculus canorus].
ACCESSION   XP_053911932
VERSION     XP_053911932.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055957.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..973
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..973
                     /product="CRACD-like protein"
                     /calculated_mol_wt=107843
     Region          128..273
                     /region_name="DUF4592"
                     /note="Domain of unknown function (DUF4592); pfam15262"
                     /db_xref="CDD:464602"
     Region          <552..876
                     /region_name="PTZ00108"
                     /note="DNA topoisomerase 2-like protein; Provisional"
                     /db_xref="CDD:240271"
     CDS             1..973
                     /gene="CRACDL"
                     /coded_by="XM_054055957.1:294..3215"
                     /db_xref="GeneID:104056655"
ORIGIN      
        1 mnssrimdpk mretegdged nsgkkkskfk sfkkffgkkk rkeasssgss slklfqstsd
       61 vvvshdmhvn ydsedeleth kgimgsrals hdsifipetg qeparpvrvf sqenisdrir
      121 alqlklqptm klgppppfrl htkrtedagt sseddglprs ppeisllhen lnsstttrfs
      181 dshkhlssls lagtgseeee qvtlapvlrs lstdsqlfpr hgsakigapq isdgtispaa
      241 sfdappelss cldnsaakhk llikprnqrs gkmrrfsqrt qsesltdlsc tpeeeeddek
      301 emqtdlpdav fkpsnqelpc gtaaaqdvas wlkprmpedl pslrpavtkh asesvvqeal
      361 lpenepegcq papqttcvks qsswlledkd fttssysspd revqkqeycs etpvllsgdv
      421 sdvslnilnq gnkelpttfs vnkipseedi sssknsiacl kgsdeniqke dqlpvempcn
      481 ketkkevall sesskqfsiv ffqptdsphv shlssskqmg ssascslekt kteeeaaasd
      541 kentlsqvht eevlekkvek aanelnalrk fsvssarerp rtrslhfpes selesslkpg
      601 fflskakvss rdekwkvdlq kesdledeks snkkqtllte sdsentgqst eilagcvsla
      661 vdtmpvpnds lmasqnhpsc edrspfqvkl rstslslkyr ensspepkgi krysaefnle
      721 negftsflkg dkaqikkttd tniddslnek ikpkaksseq lsskpplpkk palqnittpn
      781 aaakkerqdk sihtpesrne drdlekksnp skvpersass pvaagdsgrd pdsppepvwi
      841 siarqkqkgm qqeqesdrek lvapdvksdt ekqnkekert egsvkqqrsk pflppkspse
      901 ehwketkpev keplprtnsl shyvpvppps tlmdkdeish fkkdrnapav qpswmelakk
      961 ksqawsdmpq iik
//
LOCUS       XP_053911933             973 aa            linear   VRT 09-MAR-2023
DEFINITION  CRACD-like protein [Cuculus canorus].
ACCESSION   XP_053911933
VERSION     XP_053911933.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055958.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..973
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..973
                     /product="CRACD-like protein"
                     /calculated_mol_wt=107843
     Region          128..273
                     /region_name="DUF4592"
                     /note="Domain of unknown function (DUF4592); pfam15262"
                     /db_xref="CDD:464602"
     Region          <552..876
                     /region_name="PTZ00108"
                     /note="DNA topoisomerase 2-like protein; Provisional"
                     /db_xref="CDD:240271"
     CDS             1..973
                     /gene="CRACDL"
                     /coded_by="XM_054055958.1:492..3413"
                     /db_xref="GeneID:104056655"
ORIGIN      
        1 mnssrimdpk mretegdged nsgkkkskfk sfkkffgkkk rkeasssgss slklfqstsd
       61 vvvshdmhvn ydsedeleth kgimgsrals hdsifipetg qeparpvrvf sqenisdrir
      121 alqlklqptm klgppppfrl htkrtedagt sseddglprs ppeisllhen lnsstttrfs
      181 dshkhlssls lagtgseeee qvtlapvlrs lstdsqlfpr hgsakigapq isdgtispaa
      241 sfdappelss cldnsaakhk llikprnqrs gkmrrfsqrt qsesltdlsc tpeeeeddek
      301 emqtdlpdav fkpsnqelpc gtaaaqdvas wlkprmpedl pslrpavtkh asesvvqeal
      361 lpenepegcq papqttcvks qsswlledkd fttssysspd revqkqeycs etpvllsgdv
      421 sdvslnilnq gnkelpttfs vnkipseedi sssknsiacl kgsdeniqke dqlpvempcn
      481 ketkkevall sesskqfsiv ffqptdsphv shlssskqmg ssascslekt kteeeaaasd
      541 kentlsqvht eevlekkvek aanelnalrk fsvssarerp rtrslhfpes selesslkpg
      601 fflskakvss rdekwkvdlq kesdledeks snkkqtllte sdsentgqst eilagcvsla
      661 vdtmpvpnds lmasqnhpsc edrspfqvkl rstslslkyr ensspepkgi krysaefnle
      721 negftsflkg dkaqikkttd tniddslnek ikpkaksseq lsskpplpkk palqnittpn
      781 aaakkerqdk sihtpesrne drdlekksnp skvpersass pvaagdsgrd pdsppepvwi
      841 siarqkqkgm qqeqesdrek lvapdvksdt ekqnkekert egsvkqqrsk pflppkspse
      901 ehwketkpev keplprtnsl shyvpvppps tlmdkdeish fkkdrnapav qpswmelakk
      961 ksqawsdmpq iik
//
LOCUS       XP_053911934             973 aa            linear   VRT 09-MAR-2023
DEFINITION  CRACD-like protein [Cuculus canorus].
ACCESSION   XP_053911934
VERSION     XP_053911934.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055959.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..973
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..973
                     /product="CRACD-like protein"
                     /calculated_mol_wt=107843
     Region          128..273
                     /region_name="DUF4592"
                     /note="Domain of unknown function (DUF4592); pfam15262"
                     /db_xref="CDD:464602"
     Region          <552..876
                     /region_name="PTZ00108"
                     /note="DNA topoisomerase 2-like protein; Provisional"
                     /db_xref="CDD:240271"
     CDS             1..973
                     /gene="CRACDL"
                     /coded_by="XM_054055959.1:32..2953"
                     /db_xref="GeneID:104056655"
ORIGIN      
        1 mnssrimdpk mretegdged nsgkkkskfk sfkkffgkkk rkeasssgss slklfqstsd
       61 vvvshdmhvn ydsedeleth kgimgsrals hdsifipetg qeparpvrvf sqenisdrir
      121 alqlklqptm klgppppfrl htkrtedagt sseddglprs ppeisllhen lnsstttrfs
      181 dshkhlssls lagtgseeee qvtlapvlrs lstdsqlfpr hgsakigapq isdgtispaa
      241 sfdappelss cldnsaakhk llikprnqrs gkmrrfsqrt qsesltdlsc tpeeeeddek
      301 emqtdlpdav fkpsnqelpc gtaaaqdvas wlkprmpedl pslrpavtkh asesvvqeal
      361 lpenepegcq papqttcvks qsswlledkd fttssysspd revqkqeycs etpvllsgdv
      421 sdvslnilnq gnkelpttfs vnkipseedi sssknsiacl kgsdeniqke dqlpvempcn
      481 ketkkevall sesskqfsiv ffqptdsphv shlssskqmg ssascslekt kteeeaaasd
      541 kentlsqvht eevlekkvek aanelnalrk fsvssarerp rtrslhfpes selesslkpg
      601 fflskakvss rdekwkvdlq kesdledeks snkkqtllte sdsentgqst eilagcvsla
      661 vdtmpvpnds lmasqnhpsc edrspfqvkl rstslslkyr ensspepkgi krysaefnle
      721 negftsflkg dkaqikkttd tniddslnek ikpkaksseq lsskpplpkk palqnittpn
      781 aaakkerqdk sihtpesrne drdlekksnp skvpersass pvaagdsgrd pdsppepvwi
      841 siarqkqkgm qqeqesdrek lvapdvksdt ekqnkekert egsvkqqrsk pflppkspse
      901 ehwketkpev keplprtnsl shyvpvppps tlmdkdeish fkkdrnapav qpswmelakk
      961 ksqawsdmpq iik
//
LOCUS       XP_009567527             163 aa            linear   VRT 09-MAR-2023
DEFINITION  cyclin-dependent kinase inhibitor 1 [Cuculus canorus].
ACCESSION   XP_009567527
VERSION     XP_009567527.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009569232.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567527.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..163
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..163
                     /product="cyclin-dependent kinase inhibitor 1"
                     /calculated_mol_wt=18743
     Region          28..73
                     /region_name="CDI"
                     /note="Cyclin-dependent kinase inhibitor; pfam02234"
                     /db_xref="CDD:460503"
     CDS             1..163
                     /gene="LOC104066609"
                     /coded_by="XM_009569232.2:131..622"
                     /db_xref="GeneID:104066609"
ORIGIN      
        1 mymcaggwhq gekmewrpgk sthacrnlfg pidheqlrqd fqhmlqnsie gaqqkwnfdf
       61 lqdtplegll qweeleghkv ptfyhtcvve daqtplqrln lplgkgdksh rfdqmtenpk
      121 tskraggkki segkkrrets ltdywakkrv ktnmqaaakk tts
//
LOCUS       XP_009554736             583 aa            linear   VRT 09-MAR-2023
DEFINITION  radixin [Cuculus canorus].
ACCESSION   XP_009554736
VERSION     XP_009554736.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556441.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554736.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..583
                     /product="radixin"
                     /calculated_mol_wt=68483
     Region          7..206
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Region          200..296
                     /region_name="FERM_C_ERM"
                     /note="FERM domain C-lobe/F3 of the ERM family; cd13194"
                     /db_xref="CDD:270015"
     Site            order(242..243,245..251,260,281,284..285,288)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:270015"
     Site            order(242,245..252,260,281,284..285,288)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:270015"
     Site            order(278,282)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270015"
     Site            281..296
                     /site_type="other"
                     /note="actin binding site 2 [polypeptide binding]"
                     /db_xref="CDD:270015"
     Region          347..456
                     /region_name="ERM_helical"
                     /note="Ezrin/radixin/moesin, alpha-helical domain;
                     pfam20492"
                     /db_xref="CDD:466641"
     Region          507..583
                     /region_name="ERM_C"
                     /note="Ezrin/radixin/moesin family C terminal; pfam00769"
                     /db_xref="CDD:459932"
     CDS             1..583
                     /gene="RDX"
                     /coded_by="XM_009556441.2:323..2074"
                     /db_xref="GeneID:104055331"
ORIGIN      
        1 mpkpinvrvt tmdaelefai qpnttgkqlf dqvvktvglr evwffglqyv dskgystwlk
       61 lnkkvtqqdv rkenplqfrf rakffpedvs eeliqeitqr lfflqvkeai lndeiycppe
      121 tavllasyav qskygdyske ihklgyland rllpqrvleq hkltkeqwee riqnwheehr
      181 gmlredsmme ylkiaqdlem ygvnyfeikn kkgtelwlgv dalglniyeh ddkltpkigf
      241 pwseirnisf ndkkfvikpi dkkapdfvfy aprlrinkri lalcmgnhel ymrrrkpdti
      301 evqqmkaqar eekhqkqler aqlenekkkr eiaekekeri erekeelmer lrqieeqtmk
      361 aqkeleeqtr raleldqerk rakeeaerle kerraaeeak aalakqaadq mknqeqlaae
      421 laeftakial leeakkkkee easewqhkaf aaqedlektk eelksvmsap pppppppvip
      481 ptenehdehd ennaeasael ssdgvmnhrs eeervtetqk nervkkqlqa lsselaqard
      541 etkktqndvl haenvkagrd kyktlrqirq gntkqridef eam
//
LOCUS       XP_053911935             583 aa            linear   VRT 09-MAR-2023
DEFINITION  radixin [Cuculus canorus].
ACCESSION   XP_053911935
VERSION     XP_053911935.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055960.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..583
                     /product="radixin"
                     /calculated_mol_wt=68483
     Region          7..206
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Region          200..296
                     /region_name="FERM_C_ERM"
                     /note="FERM domain C-lobe/F3 of the ERM family; cd13194"
                     /db_xref="CDD:270015"
     Site            order(242..243,245..251,260,281,284..285,288)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:270015"
     Site            order(242,245..252,260,281,284..285,288)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:270015"
     Site            order(278,282)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270015"
     Site            281..296
                     /site_type="other"
                     /note="actin binding site 2 [polypeptide binding]"
                     /db_xref="CDD:270015"
     Region          347..456
                     /region_name="ERM_helical"
                     /note="Ezrin/radixin/moesin, alpha-helical domain;
                     pfam20492"
                     /db_xref="CDD:466641"
     Region          507..583
                     /region_name="ERM_C"
                     /note="Ezrin/radixin/moesin family C terminal; pfam00769"
                     /db_xref="CDD:459932"
     CDS             1..583
                     /gene="RDX"
                     /coded_by="XM_054055960.1:323..2074"
                     /db_xref="GeneID:104055331"
ORIGIN      
        1 mpkpinvrvt tmdaelefai qpnttgkqlf dqvvktvglr evwffglqyv dskgystwlk
       61 lnkkvtqqdv rkenplqfrf rakffpedvs eeliqeitqr lfflqvkeai lndeiycppe
      121 tavllasyav qskygdyske ihklgyland rllpqrvleq hkltkeqwee riqnwheehr
      181 gmlredsmme ylkiaqdlem ygvnyfeikn kkgtelwlgv dalglniyeh ddkltpkigf
      241 pwseirnisf ndkkfvikpi dkkapdfvfy aprlrinkri lalcmgnhel ymrrrkpdti
      301 evqqmkaqar eekhqkqler aqlenekkkr eiaekekeri erekeelmer lrqieeqtmk
      361 aqkeleeqtr raleldqerk rakeeaerle kerraaeeak aalakqaadq mknqeqlaae
      421 laeftakial leeakkkkee easewqhkaf aaqedlektk eelksvmsap pppppppvip
      481 ptenehdehd ennaeasael ssdgvmnhrs eeervtetqk nervkkqlqa lsselaqard
      541 etkktqndvl haenvkagrd kyktlrqirq gntkqridef eam
//
LOCUS       XP_053911936             583 aa            linear   VRT 09-MAR-2023
DEFINITION  radixin [Cuculus canorus].
ACCESSION   XP_053911936
VERSION     XP_053911936.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055961.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..583
                     /product="radixin"
                     /calculated_mol_wt=68483
     Region          7..206
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Region          200..296
                     /region_name="FERM_C_ERM"
                     /note="FERM domain C-lobe/F3 of the ERM family; cd13194"
                     /db_xref="CDD:270015"
     Site            order(242..243,245..251,260,281,284..285,288)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:270015"
     Site            order(242,245..252,260,281,284..285,288)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:270015"
     Site            order(278,282)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:270015"
     Site            281..296
                     /site_type="other"
                     /note="actin binding site 2 [polypeptide binding]"
                     /db_xref="CDD:270015"
     Region          347..456
                     /region_name="ERM_helical"
                     /note="Ezrin/radixin/moesin, alpha-helical domain;
                     pfam20492"
                     /db_xref="CDD:466641"
     Region          507..583
                     /region_name="ERM_C"
                     /note="Ezrin/radixin/moesin family C terminal; pfam00769"
                     /db_xref="CDD:459932"
     CDS             1..583
                     /gene="RDX"
                     /coded_by="XM_054055961.1:323..2074"
                     /db_xref="GeneID:104055331"
ORIGIN      
        1 mpkpinvrvt tmdaelefai qpnttgkqlf dqvvktvglr evwffglqyv dskgystwlk
       61 lnkkvtqqdv rkenplqfrf rakffpedvs eeliqeitqr lfflqvkeai lndeiycppe
      121 tavllasyav qskygdyske ihklgyland rllpqrvleq hkltkeqwee riqnwheehr
      181 gmlredsmme ylkiaqdlem ygvnyfeikn kkgtelwlgv dalglniyeh ddkltpkigf
      241 pwseirnisf ndkkfvikpi dkkapdfvfy aprlrinkri lalcmgnhel ymrrrkpdti
      301 evqqmkaqar eekhqkqler aqlenekkkr eiaekekeri erekeelmer lrqieeqtmk
      361 aqkeleeqtr raleldqerk rakeeaerle kerraaeeak aalakqaadq mknqeqlaae
      421 laeftakial leeakkkkee easewqhkaf aaqedlektk eelksvmsap pppppppvip
      481 ptenehdehd ennaeasael ssdgvmnhrs eeervtetqk nervkkqlqa lsselaqard
      541 etkktqndvl haenvkagrd kyktlrqirq gntkqridef eam
//
LOCUS       XP_053911937             544 aa            linear   VRT 09-MAR-2023
DEFINITION  calcyphosin-2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911937
VERSION     XP_053911937.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055962.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..544
                     /product="calcyphosin-2 isoform X1"
                     /calculated_mol_wt=62075
     Region          380..>498
                     /region_name="FRQ1"
                     /note="Ca2+-binding protein, EF-hand superfamily [Signal
                     transduction mechanisms]; COG5126"
                     /db_xref="CDD:444056"
     CDS             1..544
                     /gene="CAPS2"
                     /coded_by="XM_054055962.1:169..1803"
                     /db_xref="GeneID:104061145"
ORIGIN      
        1 mdfevkgvaa spqrqtqlsl kgekhqgwrp dtrasrgprp pevpsldlgr ledsdgedgd
       61 syipyteshp ytchldrrts lqtpyaqhhq aqefkqvsrk scqkktqgtq ledghdddla
      121 afdekallqr cytsepynmr hnirkeaddv aaerkkqavv eqvmldhlsr avisdpeqst
      181 hvdvykgahg llglgaapvr frkrtlhetq vrtksgltet mlsnklcfas riisrnghda
      241 creligiffa cdksltvyef rqfgknrtna lpfiqkgvyq hqrgkkkgka ydlsdfyvga
      301 nltfrsvdhn lpesvkqkpv ltlrviside vdmdflkass melkqecskr viddneafkk
      361 iqgilreals krgvrliigl gkyfrqvdkn rngflsqadf kealkvfrle iperdfetlw
      421 ltlddskndk vdygeftrai fgemnecrka fvrkaymkld fnktgsipvv dirktycakk
      481 hplvlagkat eeqiklsfle tlkescsnpn evsysefedy yeglsigivd dddfvnilrn
      541 twgi
//
LOCUS       XP_053911938             544 aa            linear   VRT 09-MAR-2023
DEFINITION  calcyphosin-2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911938
VERSION     XP_053911938.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055963.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..544
                     /product="calcyphosin-2 isoform X1"
                     /calculated_mol_wt=62075
     Region          380..>498
                     /region_name="FRQ1"
                     /note="Ca2+-binding protein, EF-hand superfamily [Signal
                     transduction mechanisms]; COG5126"
                     /db_xref="CDD:444056"
     CDS             1..544
                     /gene="CAPS2"
                     /coded_by="XM_054055963.1:81..1715"
                     /db_xref="GeneID:104061145"
ORIGIN      
        1 mdfevkgvaa spqrqtqlsl kgekhqgwrp dtrasrgprp pevpsldlgr ledsdgedgd
       61 syipyteshp ytchldrrts lqtpyaqhhq aqefkqvsrk scqkktqgtq ledghdddla
      121 afdekallqr cytsepynmr hnirkeaddv aaerkkqavv eqvmldhlsr avisdpeqst
      181 hvdvykgahg llglgaapvr frkrtlhetq vrtksgltet mlsnklcfas riisrnghda
      241 creligiffa cdksltvyef rqfgknrtna lpfiqkgvyq hqrgkkkgka ydlsdfyvga
      301 nltfrsvdhn lpesvkqkpv ltlrviside vdmdflkass melkqecskr viddneafkk
      361 iqgilreals krgvrliigl gkyfrqvdkn rngflsqadf kealkvfrle iperdfetlw
      421 ltlddskndk vdygeftrai fgemnecrka fvrkaymkld fnktgsipvv dirktycakk
      481 hplvlagkat eeqiklsfle tlkescsnpn evsysefedy yeglsigivd dddfvnilrn
      541 twgi
//
LOCUS       XP_053911939             544 aa            linear   VRT 09-MAR-2023
DEFINITION  calcyphosin-2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911939
VERSION     XP_053911939.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055964.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..544
                     /product="calcyphosin-2 isoform X1"
                     /calculated_mol_wt=62075
     Region          380..>498
                     /region_name="FRQ1"
                     /note="Ca2+-binding protein, EF-hand superfamily [Signal
                     transduction mechanisms]; COG5126"
                     /db_xref="CDD:444056"
     CDS             1..544
                     /gene="CAPS2"
                     /coded_by="XM_054055964.1:123..1757"
                     /db_xref="GeneID:104061145"
ORIGIN      
        1 mdfevkgvaa spqrqtqlsl kgekhqgwrp dtrasrgprp pevpsldlgr ledsdgedgd
       61 syipyteshp ytchldrrts lqtpyaqhhq aqefkqvsrk scqkktqgtq ledghdddla
      121 afdekallqr cytsepynmr hnirkeaddv aaerkkqavv eqvmldhlsr avisdpeqst
      181 hvdvykgahg llglgaapvr frkrtlhetq vrtksgltet mlsnklcfas riisrnghda
      241 creligiffa cdksltvyef rqfgknrtna lpfiqkgvyq hqrgkkkgka ydlsdfyvga
      301 nltfrsvdhn lpesvkqkpv ltlrviside vdmdflkass melkqecskr viddneafkk
      361 iqgilreals krgvrliigl gkyfrqvdkn rngflsqadf kealkvfrle iperdfetlw
      421 ltlddskndk vdygeftrai fgemnecrka fvrkaymkld fnktgsipvv dirktycakk
      481 hplvlagkat eeqiklsfle tlkescsnpn evsysefedy yeglsigivd dddfvnilrn
      541 twgi
//
LOCUS       XP_053911940             530 aa            linear   VRT 09-MAR-2023
DEFINITION  calcyphosin-2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053911940
VERSION     XP_053911940.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055965.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..530
                     /product="calcyphosin-2 isoform X2"
                     /calculated_mol_wt=60397
     Region          366..>484
                     /region_name="FRQ1"
                     /note="Ca2+-binding protein, EF-hand superfamily [Signal
                     transduction mechanisms]; COG5126"
                     /db_xref="CDD:444056"
     CDS             1..530
                     /gene="CAPS2"
                     /coded_by="XM_054055965.1:169..1761"
                     /db_xref="GeneID:104061145"
ORIGIN      
        1 mdfevkgvaa spqrqtqlsl kgekhqgwrp dtrasrgprp pevpsldlgr ledsdgedgd
       61 syipyteshp ytchldrrts lqtpyaqhhq aqegtqledg hdddlaafde kallqrcyts
      121 epynmrhnir keaddvaaer kkqavveqvm ldhlsravis dpeqsthvdv ykgahgllgl
      181 gaapvrfrkr tlhetqvrtk sgltetmlsn klcfasriis rnghdacrel igiffacdks
      241 ltvyefrqfg knrtnalpfi qkgvyqhqrg kkkgkaydls dfyvganltf rsvdhnlpes
      301 vkqkpvltlr visidevdmd flkassmelk qecskrvidd neafkkiqgi lrealskrgv
      361 rliiglgkyf rqvdknrngf lsqadfkeal kvfrleiper dfetlwltld dskndkvdyg
      421 eftraifgem necrkafvrk aymkldfnkt gsipvvdirk tycakkhplv lagkateeqi
      481 klsfletlke scsnpnevsy sefedyyegl sigivddddf vnilrntwgi
//
LOCUS       XP_053911941             440 aa            linear   VRT 09-MAR-2023
DEFINITION  calcyphosin-2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053911941
VERSION     XP_053911941.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055966.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..440
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..440
                     /product="calcyphosin-2 isoform X3"
                     /calculated_mol_wt=50221
     Region          276..>394
                     /region_name="FRQ1"
                     /note="Ca2+-binding protein, EF-hand superfamily [Signal
                     transduction mechanisms]; COG5126"
                     /db_xref="CDD:444056"
     CDS             1..440
                     /gene="CAPS2"
                     /coded_by="XM_054055966.1:235..1557"
                     /db_xref="GeneID:104061145"
ORIGIN      
        1 mdcgtqledg hdddlaafde kallqrcyts epynmrhnir keaddvaaer kkqavveqvm
       61 ldhlsravis dpeqsthvdv ykgahgllgl gaapvrfrkr tlhetqvrtk sgltetmlsn
      121 klcfasriis rnghdacrel igiffacdks ltvyefrqfg knrtnalpfi qkgvyqhqrg
      181 kkkgkaydls dfyvganltf rsvdhnlpes vkqkpvltlr visidevdmd flkassmelk
      241 qecskrvidd neafkkiqgi lrealskrgv rliiglgkyf rqvdknrngf lsqadfkeal
      301 kvfrleiper dfetlwltld dskndkvdyg eftraifgem necrkafvrk aymkldfnkt
      361 gsipvvdirk tycakkhplv lagkateeqi klsfletlke scsnpnevsy sefedyyegl
      421 sigivddddf vnilrntwgi
//
LOCUS       XP_053911942             440 aa            linear   VRT 09-MAR-2023
DEFINITION  calcyphosin-2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053911942
VERSION     XP_053911942.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055967.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..440
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..440
                     /product="calcyphosin-2 isoform X3"
                     /calculated_mol_wt=50221
     Region          276..>394
                     /region_name="FRQ1"
                     /note="Ca2+-binding protein, EF-hand superfamily [Signal
                     transduction mechanisms]; COG5126"
                     /db_xref="CDD:444056"
     CDS             1..440
                     /gene="CAPS2"
                     /coded_by="XM_054055967.1:252..1574"
                     /db_xref="GeneID:104061145"
ORIGIN      
        1 mdcgtqledg hdddlaafde kallqrcyts epynmrhnir keaddvaaer kkqavveqvm
       61 ldhlsravis dpeqsthvdv ykgahgllgl gaapvrfrkr tlhetqvrtk sgltetmlsn
      121 klcfasriis rnghdacrel igiffacdks ltvyefrqfg knrtnalpfi qkgvyqhqrg
      181 kkkgkaydls dfyvganltf rsvdhnlpes vkqkpvltlr visidevdmd flkassmelk
      241 qecskrvidd neafkkiqgi lrealskrgv rliiglgkyf rqvdknrngf lsqadfkeal
      301 kvfrleiper dfetlwltld dskndkvdyg eftraifgem necrkafvrk aymkldfnkt
      361 gsipvvdirk tycakkhplv lagkateeqi klsfletlke scsnpnevsy sefedyyegl
      421 sigivddddf vnilrntwgi
//
LOCUS       XP_053911943             440 aa            linear   VRT 09-MAR-2023
DEFINITION  calcyphosin-2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053911943
VERSION     XP_053911943.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055968.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..440
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..440
                     /product="calcyphosin-2 isoform X3"
                     /calculated_mol_wt=50221
     Region          276..>394
                     /region_name="FRQ1"
                     /note="Ca2+-binding protein, EF-hand superfamily [Signal
                     transduction mechanisms]; COG5126"
                     /db_xref="CDD:444056"
     CDS             1..440
                     /gene="CAPS2"
                     /coded_by="XM_054055968.1:1294..2616"
                     /db_xref="GeneID:104061145"
ORIGIN      
        1 mdcgtqledg hdddlaafde kallqrcyts epynmrhnir keaddvaaer kkqavveqvm
       61 ldhlsravis dpeqsthvdv ykgahgllgl gaapvrfrkr tlhetqvrtk sgltetmlsn
      121 klcfasriis rnghdacrel igiffacdks ltvyefrqfg knrtnalpfi qkgvyqhqrg
      181 kkkgkaydls dfyvganltf rsvdhnlpes vkqkpvltlr visidevdmd flkassmelk
      241 qecskrvidd neafkkiqgi lrealskrgv rliiglgkyf rqvdknrngf lsqadfkeal
      301 kvfrleiper dfetlwltld dskndkvdyg eftraifgem necrkafvrk aymkldfnkt
      361 gsipvvdirk tycakkhplv lagkateeqi klsfletlke scsnpnevsy sefedyyegl
      421 sigivddddf vnilrntwgi
//
LOCUS       XP_053911944             381 aa            linear   VRT 09-MAR-2023
DEFINITION  calcyphosin-2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053911944
VERSION     XP_053911944.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055969.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..381
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..381
                     /product="calcyphosin-2 isoform X4"
                     /calculated_mol_wt=43471
     Region          217..>335
                     /region_name="FRQ1"
                     /note="Ca2+-binding protein, EF-hand superfamily [Signal
                     transduction mechanisms]; COG5126"
                     /db_xref="CDD:444056"
     CDS             1..381
                     /gene="CAPS2"
                     /coded_by="XM_054055969.1:331..1476"
                     /db_xref="GeneID:104061145"
ORIGIN      
        1 mldhlsravi sdpeqsthvd vykgahgllg lgaapvrfrk rtlhetqvrt ksgltetmls
       61 nklcfasrii srnghdacre ligiffacdk sltvyefrqf gknrtnalpf iqkgvyqhqr
      121 gkkkgkaydl sdfyvganlt frsvdhnlpe svkqkpvltl rvisidevdm dflkassmel
      181 kqecskrvid dneafkkiqg ilrealskrg vrliiglgky frqvdknrng flsqadfkea
      241 lkvfrleipe rdfetlwltl ddskndkvdy geftraifge mnecrkafvr kaymkldfnk
      301 tgsipvvdir ktycakkhpl vlagkateeq iklsfletlk escsnpnevs ysefedyyeg
      361 lsigivdddd fvnilrntwg i
//
LOCUS       XP_053911945             495 aa            linear   VRT 09-MAR-2023
DEFINITION  neutral amino acid uniporter 4 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911945
VERSION     XP_053911945.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055970.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..495
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..495
                     /product="neutral amino acid uniporter 4 isoform X1"
                     /calculated_mol_wt=54909
     Region          49..463
                     /region_name="SLC5-6-like_sbd"
                     /note="Solute carrier families 5 and 6-like; solute
                     binding domain; cl00456"
                     /db_xref="CDD:444915"
     CDS             1..495
                     /gene="SLC36A4"
                     /coded_by="XM_054055970.1:47..1534"
                     /db_xref="GeneID:104064094"
ORIGIN      
        1 mdgaggeeld mevmkplide qnsdgisdee hennflpvek hyqldneegi tfiqtlmhll
       61 kgnigtgllg lplairnagi vvgpislvfi gvisvhcmhi lvrcshslcq rmkksslgys
      121 dtvsyamevg pltalqkras wgryivdffl vitqlgfcsv yvvflaenvk qvhegflenk
      181 tapinisats sssekrstdl riymlcflpf millvfirdl kslsflslla nmsmavslvi
      241 iyqyivrdiv dprklppmvg wkkyplffgt aifafegigv vlplenrmkd ttrfpqalni
      301 gmgivmtlyi slatlgylrf gdeikgsitl nlpqdiwlyq svkilysfgi fvtysiqyyv
      361 paeilipavt skveqkwkll selvarallv cstcavavli prldlvisfv gavssstlal
      421 ilpplveilt fykenlslwm ifkdvfiavi gvvgfltgty vtveeilypa stvlanster
      481 isadlnatnw vtglk
//
LOCUS       XP_053911947             485 aa            linear   VRT 09-MAR-2023
DEFINITION  neutral amino acid uniporter 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053911947
VERSION     XP_053911947.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055972.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..485
                     /product="neutral amino acid uniporter 4 isoform X2"
                     /calculated_mol_wt=53934
     Region          39..453
                     /region_name="SLC5-6-like_sbd"
                     /note="Solute carrier families 5 and 6-like; solute
                     binding domain; cl00456"
                     /db_xref="CDD:444915"
     CDS             1..485
                     /gene="SLC36A4"
                     /coded_by="XM_054055972.1:87..1544"
                     /db_xref="GeneID:104064094"
ORIGIN      
        1 mevmkplide qnsdgisdee hennflpvek hyqldneegi tfiqtlmhll kgnigtgllg
       61 lplairnagi vvgpislvfi gvisvhcmhi lvrcshslcq rmkksslgys dtvsyamevg
      121 pltalqkras wgryivdffl vitqlgfcsv yvvflaenvk qvhegflenk tapinisats
      181 sssekrstdl riymlcflpf millvfirdl kslsflslla nmsmavslvi iyqyivrdiv
      241 dprklppmvg wkkyplffgt aifafegigv vlplenrmkd ttrfpqalni gmgivmtlyi
      301 slatlgylrf gdeikgsitl nlpqdiwlyq svkilysfgi fvtysiqyyv paeilipavt
      361 skveqkwkll selvarallv cstcavavli prldlvisfv gavssstlal ilpplveilt
      421 fykenlslwm ifkdvfiavi gvvgfltgty vtveeilypa stvlanster isadlnatnw
      481 vtglk
//
LOCUS       XP_053911948             485 aa            linear   VRT 09-MAR-2023
DEFINITION  neutral amino acid uniporter 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053911948
VERSION     XP_053911948.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055973.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..485
                     /product="neutral amino acid uniporter 4 isoform X2"
                     /calculated_mol_wt=53934
     Region          39..453
                     /region_name="SLC5-6-like_sbd"
                     /note="Solute carrier families 5 and 6-like; solute
                     binding domain; cl00456"
                     /db_xref="CDD:444915"
     CDS             1..485
                     /gene="SLC36A4"
                     /coded_by="XM_054055973.1:48..1505"
                     /db_xref="GeneID:104064094"
ORIGIN      
        1 mevmkplide qnsdgisdee hennflpvek hyqldneegi tfiqtlmhll kgnigtgllg
       61 lplairnagi vvgpislvfi gvisvhcmhi lvrcshslcq rmkksslgys dtvsyamevg
      121 pltalqkras wgryivdffl vitqlgfcsv yvvflaenvk qvhegflenk tapinisats
      181 sssekrstdl riymlcflpf millvfirdl kslsflslla nmsmavslvi iyqyivrdiv
      241 dprklppmvg wkkyplffgt aifafegigv vlplenrmkd ttrfpqalni gmgivmtlyi
      301 slatlgylrf gdeikgsitl nlpqdiwlyq svkilysfgi fvtysiqyyv paeilipavt
      361 skveqkwkll selvarallv cstcavavli prldlvisfv gavssstlal ilpplveilt
      421 fykenlslwm ifkdvfiavi gvvgfltgty vtveeilypa stvlanster isadlnatnw
      481 vtglk
//
LOCUS       XP_053911949             485 aa            linear   VRT 09-MAR-2023
DEFINITION  neutral amino acid uniporter 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053911949
VERSION     XP_053911949.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055974.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..485
                     /product="neutral amino acid uniporter 4 isoform X2"
                     /calculated_mol_wt=53934
     Region          39..453
                     /region_name="SLC5-6-like_sbd"
                     /note="Solute carrier families 5 and 6-like; solute
                     binding domain; cl00456"
                     /db_xref="CDD:444915"
     CDS             1..485
                     /gene="SLC36A4"
                     /coded_by="XM_054055974.1:106..1563"
                     /db_xref="GeneID:104064094"
ORIGIN      
        1 mevmkplide qnsdgisdee hennflpvek hyqldneegi tfiqtlmhll kgnigtgllg
       61 lplairnagi vvgpislvfi gvisvhcmhi lvrcshslcq rmkksslgys dtvsyamevg
      121 pltalqkras wgryivdffl vitqlgfcsv yvvflaenvk qvhegflenk tapinisats
      181 sssekrstdl riymlcflpf millvfirdl kslsflslla nmsmavslvi iyqyivrdiv
      241 dprklppmvg wkkyplffgt aifafegigv vlplenrmkd ttrfpqalni gmgivmtlyi
      301 slatlgylrf gdeikgsitl nlpqdiwlyq svkilysfgi fvtysiqyyv paeilipavt
      361 skveqkwkll selvarallv cstcavavli prldlvisfv gavssstlal ilpplveilt
      421 fykenlslwm ifkdvfiavi gvvgfltgty vtveeilypa stvlanster isadlnatnw
      481 vtglk
//
LOCUS       XP_053911950             334 aa            linear   VRT 09-MAR-2023
DEFINITION  ELMO domain-containing protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911950
VERSION     XP_053911950.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055975.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..334
                     /product="ELMO domain-containing protein 1 isoform X1"
                     /calculated_mol_wt=38932
     Region          118..303
                     /region_name="ELMO_CED12"
                     /note="ELMO/CED-12 family; pfam04727"
                     /db_xref="CDD:461411"
     CDS             1..334
                     /gene="ELMOD1"
                     /coded_by="XM_054055975.1:221..1225"
                     /db_xref="GeneID:104055358"
ORIGIN      
        1 mkhflrmfvq vclyfyckcl wrclkfvvrk ltgrcelqri cyntkpgaar tmkieaslkg
       61 skskrlqtsv svhpdaiekt iddimelkri npdvnpqlgv slqacllqiv gyrnliaeve
      121 klrrepydse npqheemllk lwkclkpdsp lkariskqwc eigfqgddpk tdfrgmgllg
      181 lynlvyfaew dteiaqqvlc dslqpkyrei tkkelsqfsk aewekkkfdk aigysfaivg
      241 initdlaynl lvsgalkthf ynvapeaptl thfqqtfcyl mhefhkfwie edpldimefn
      301 rvrekfhkri lkqlqnpema lcphfaases linm
//
LOCUS       XP_053911952             334 aa            linear   VRT 09-MAR-2023
DEFINITION  ELMO domain-containing protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911952
VERSION     XP_053911952.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055977.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..334
                     /product="ELMO domain-containing protein 1 isoform X1"
                     /calculated_mol_wt=38932
     Region          118..303
                     /region_name="ELMO_CED12"
                     /note="ELMO/CED-12 family; pfam04727"
                     /db_xref="CDD:461411"
     CDS             1..334
                     /gene="ELMOD1"
                     /coded_by="XM_054055977.1:117..1121"
                     /db_xref="GeneID:104055358"
ORIGIN      
        1 mkhflrmfvq vclyfyckcl wrclkfvvrk ltgrcelqri cyntkpgaar tmkieaslkg
       61 skskrlqtsv svhpdaiekt iddimelkri npdvnpqlgv slqacllqiv gyrnliaeve
      121 klrrepydse npqheemllk lwkclkpdsp lkariskqwc eigfqgddpk tdfrgmgllg
      181 lynlvyfaew dteiaqqvlc dslqpkyrei tkkelsqfsk aewekkkfdk aigysfaivg
      241 initdlaynl lvsgalkthf ynvapeaptl thfqqtfcyl mhefhkfwie edpldimefn
      301 rvrekfhkri lkqlqnpema lcphfaases linm
//
LOCUS       XP_053911953             334 aa            linear   VRT 09-MAR-2023
DEFINITION  ELMO domain-containing protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911953
VERSION     XP_053911953.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055978.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..334
                     /product="ELMO domain-containing protein 1 isoform X1"
                     /calculated_mol_wt=38932
     Region          118..303
                     /region_name="ELMO_CED12"
                     /note="ELMO/CED-12 family; pfam04727"
                     /db_xref="CDD:461411"
     CDS             1..334
                     /gene="ELMOD1"
                     /coded_by="XM_054055978.1:98..1102"
                     /db_xref="GeneID:104055358"
ORIGIN      
        1 mkhflrmfvq vclyfyckcl wrclkfvvrk ltgrcelqri cyntkpgaar tmkieaslkg
       61 skskrlqtsv svhpdaiekt iddimelkri npdvnpqlgv slqacllqiv gyrnliaeve
      121 klrrepydse npqheemllk lwkclkpdsp lkariskqwc eigfqgddpk tdfrgmgllg
      181 lynlvyfaew dteiaqqvlc dslqpkyrei tkkelsqfsk aewekkkfdk aigysfaivg
      241 initdlaynl lvsgalkthf ynvapeaptl thfqqtfcyl mhefhkfwie edpldimefn
      301 rvrekfhkri lkqlqnpema lcphfaases linm
//
LOCUS       XP_053911954             328 aa            linear   VRT 09-MAR-2023
DEFINITION  ELMO domain-containing protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053911954
VERSION     XP_053911954.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055979.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..328
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..328
                     /product="ELMO domain-containing protein 1 isoform X2"
                     /calculated_mol_wt=38119
     Region          112..297
                     /region_name="ELMO_CED12"
                     /note="ELMO/CED-12 family; pfam04727"
                     /db_xref="CDD:461411"
     CDS             1..328
                     /gene="ELMOD1"
                     /coded_by="XM_054055979.1:276..1262"
                     /db_xref="GeneID:104055358"
ORIGIN      
        1 mfvqvclyfy ckclwrclkf vvrkltgrce lqricyntkp gaartmkiea slkgskskrl
       61 qtsvsvhpda iektiddime lkrinpdvnp qlgvslqacl lqivgyrnli aeveklrrep
      121 ydsenpqhee mllklwkclk pdsplkaris kqwceigfqg ddpktdfrgm gllglynlvy
      181 faewdteiaq qvlcdslqpk yreitkkels qfskaewekk kfdkaigysf aivginitdl
      241 aynllvsgal kthfynvape aptlthfqqt fcylmhefhk fwieedpldi mefnrvrekf
      301 hkrilkqlqn pemalcphfa aseslinm
//
LOCUS       XP_053911955             326 aa            linear   VRT 09-MAR-2023
DEFINITION  ELMO domain-containing protein 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053911955
VERSION     XP_053911955.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055980.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..326
                     /product="ELMO domain-containing protein 1 isoform X3"
                     /calculated_mol_wt=37933
     Region          118..295
                     /region_name="ELMO_CED12"
                     /note="ELMO/CED-12 family; pfam04727"
                     /db_xref="CDD:461411"
     CDS             1..326
                     /gene="ELMOD1"
                     /coded_by="XM_054055980.1:221..1201"
                     /db_xref="GeneID:104055358"
ORIGIN      
        1 mkhflrmfvq vclyfyckcl wrclkfvvrk ltgrcelqri cyntkpgaar tmkieaslkg
       61 skskrlqtsv svhpdaiekt iddimelkri npdvnpqlgv slqacllqiv gyrnliaeve
      121 klrrepydse npqheemllk lwkclkpdsp lkariskqwc eigfqgddpk tdfrgmgllg
      181 lynlvyfaew dteiaqqvlc dslqpkysqf skaewekkkf dkaigysfai vginitdlay
      241 nllvsgalkt hfynvapeap tlthfqqtfc ylmhefhkfw ieedpldime fnrvrekfhk
      301 rilkqlqnpe malcphfaas eslinm
//
LOCUS       XP_053911957            2528 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich repeat serine/threonine-protein kinase 2 [Cuculus
            canorus].
ACCESSION   XP_053911957
VERSION     XP_053911957.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055982.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2528
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2528
                     /product="leucine-rich repeat serine/threonine-protein
                     kinase 2"
                     /calculated_mol_wt=285153
     Region          <972..1271
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          985..1012
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          1013..1036
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          1037..1068
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          1085..1108
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          1109..1130
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          1131..1154
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          1155..1197
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          1198..1221
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          1222..1246
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          1270..1297
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          1334..1507
                     /region_name="P-loop containing Nucleoside Triphosphate
                     Hydrolases"
                     /note="Members of the P-loop NTPase domain superfamily are
                     characterized by a conserved nucleotide phosphate-binding
                     motif, also referred to as the Walker A motif
                     (GxxxxGK[S/T], where x is any residue), and the Walker B
                     motif (hhhh[D/E], where h is a...; cl38936"
                     /db_xref="CDD:476819"
     Site            1341..1348
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206648"
     Site            order(1343..1349,1397,1452..1453,1455,1489..1491)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206648"
     Site            1368
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206648"
     Site            1372..1374
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206648"
     Site            1394..1397
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206648"
     Site            order(1396..1397,1413..1414)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206648"
     Site            1452..1455
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206648"
     Site            1489..1491
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206648"
     Region          1524..1740
                     /region_name="COR"
                     /note="C-terminal of Roc, COR, domain; pfam16095"
                     /db_xref="CDD:406489"
     Region          1884..2135
                     /region_name="STKc_LRRK2"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Leucine-Rich Repeat Kinase 2; cd14068"
                     /db_xref="CDD:270970"
     Site            order(1884..1888,1892,1904,1906,1933,1947..1950,1954,1956,
                     1994,1996,1998..1999,2001,2017,2020,2034..2037)
                     /site_type="active"
                     /db_xref="CDD:270970"
     Site            order(1884..1888,1892,1904,1906,1933,1947..1950,1954,1994,
                     1996,1998..1999,2001,2017)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270970"
     Site            order(1888,1954,1956,1994,1996,1998,2020,2034..2037)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270970"
     Site            2016..2037
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270970"
     CDS             1..2528
                     /gene="LRRK2"
                     /coded_by="XM_054055982.1:49..7635"
                     /db_xref="GeneID:104056085"
ORIGIN      
        1 masagaeeae areeralnkl lvrlqnfqer krldtlvqtl sdllelsarq saprlfggkk
       61 vhvplllvld lypraaavqq mswsllckli eicpstlqni apkdvgkdwe vlgvhqqilk
      121 mltihkgnln lsviglkaln lllmsdviaf llleeevdvf slvfnamhtf pkneeiqqhg
      181 ckalhklfqk vpeeqltefv eskdhmiilk vfkefpekee vilpalyslh slagppnnve
      241 vlmsgnvrcy nvivemmksf lssetvqevs ccllhkltlg nffnilvlhk vpevivkavk
      301 typenaklqa aalsclallt etiflnrdle erkeeeeekl cwleacykal elhrrntdvl
      361 eaacwalknl flyqrnlhek igdgdnqfpi eravmlsmlm hssskevfqa aagtlailsq
      421 qnvnirktll akgihmnvld imkkhphspe vaesacrvln hvfegsfphl dimtvaasev
      481 vkamrkhgks ltvqlealrv llhfmmpdtk knqngsskdv gdaafaltvk viksqclleg
      541 thslvlnaln rfignpsiqe cglkllasva dctgaleilt qqgatdtvlh tlqmfpdeqd
      601 iqclglsllr slitrkslci atmhvlstvl vstlrrfkdi teiqmhgfha ilsilglspc
      661 fakllvhesf dtvifyqmsm cftdqrdrqf qslcckcfak iaenddlknm mlekaciehn
      721 simaecllll gadinkktkt nsliyqvcek gnnpklvell lasgareqdv rsaltisikr
      781 gdsqiislll kklsldvans siclggfgig rlepswlipl fpdkltplrk qnagsalarm
      841 vlkfqmktis ddrsrtssdl nvsedgvdks ydwnfisdpl vdsvfplsdd vdsegsegsl
      901 ftkkksnsfa vaeshcremp fqrgsptlpr hsysvgpgld yeplmkqrrk ffpadespks
      961 iskfsphirp sdslsslise keyiksldls snelenidai sqnscltshl ehleklelhq
     1021 nvltnipeql cenlkcltyl dlhsnrftsf ptyllkmnci anldisrndi gpsvaldpyl
     1081 rcltlkqlnl synqlvcipe fltdvaenle qlllegnkis clcspiclke lkilnisknn
     1141 vsflaedvfm gctkleqlna rmnaleiipg lsssitslkl sqncftnvpe avlllphlrs
     1201 vdlsqnkiis lpgpmhwksl nlrellfnhn qidvldlsek acawsrlekl hlshnklkei
     1261 ppqigflenl tsldvshnpn lrffpdemgr lskiwdlple glhlnfdfkh vgckardiir
     1321 flqqrlkkav pynrmklmiv gntgsgkttl lqqlmkckrt evgspkatvg idvkdwiiqg
     1381 kgklkkelil nvwdfggqee fysthphfmt qralylavyd lskgqaevda mkpwlfnika
     1441 rastspvilv gthldvsdem qrkacmtkit rellnkrgfp aiqdchfvna teesdsiirl
     1501 rrviikeslh fkirdqpvvg qlipdsylel ekrillernn vpvefpvidq krllelvqes
     1561 qlqldenelp haihflnesg vllhfqdpal qlrdlyfvdp kwlckimaqi ltvkvegfsk
     1621 ypkgivkrsd vekfllkksk fpkiymsqyf kllekfqial plgedqllip sslsdhrpvv
     1681 elphcensei iirlyempyf pmgfwsrlin rlleispyml sgreralrpn rmywrqgiyl
     1741 nwspeayclv esaefdnspd sflkitapsc rkgcillgqv vdhidslmee wfpglldmdv
     1801 cgegetllkk walysfqdge ehqkillddl lkkaeegdll vnpdeprhti piaqiapdli
     1861 ladlprniml nnddlefdea pefllgdggf gsvyrasygg eevavkifnk htslrllrqe
     1921 lavlchlhhp slvsllaaai rprmlvmela lkgsldrllq qdnasltrtl qhrialhvad
     1981 glrylhsami iyrdlkphnv llftlypnaa viakiadygi aqyccrmgik tsegtpgfra
     2041 pevargnviy nqqadvysfg lllydiltgg srimeglkfp nefdelaiqg klpdpvkeyg
     2101 capwpevenl iknclkenpq erptssqvye ilnsaelicl mryvsipsts taecmvaanq
     2161 sckkagvwig sgntekaqls fvnlntdght cediadskil slalvtlpte kenwivagtq
     2221 sgslwainte detrrhrlqk msdsitclyc nslskqskqk nfflvgtadg klavfedrav
     2281 kckgatplki ltignvstpl mclsessyls eknimwggcg tkiialtsdf svqklietkt
     2341 sqlfchnays daniisiaid ksiylakkns hfveiwdkkt eklselidca hflkdkeekl
     2401 nkesrhklay sgrvkticlq kntalwigtg gghillldls trrpvrvmdn icdsvrvmit
     2461 aqlgtlknav lvlgyryksd tednkyhkel qscvsvwdin lphevqnlkk hiemrqelae
     2521 kmksfsld
//
LOCUS       XP_053911958             377 aa            linear   VRT 09-MAR-2023
DEFINITION  endoplasmic reticulum-Golgi intermediate compartment protein 2
            [Cuculus canorus].
ACCESSION   XP_053911958
VERSION     XP_053911958.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055983.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..377
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..377
                     /product="endoplasmic reticulum-Golgi intermediate
                     compartment protein 2"
                     /calculated_mol_wt=42403
     Region          13..95
                     /region_name="ERGIC_N"
                     /note="Endoplasmic Reticulum-Golgi Intermediate
                     Compartment (ERGIC); pfam13850"
                     /db_xref="CDD:464000"
     Region          <170..332
                     /region_name="COPIIcoated_ERV"
                     /note="Endoplasmic reticulum vesicle transporter;
                     pfam07970"
                     /db_xref="CDD:462327"
     CDS             1..377
                     /gene="ERGIC2"
                     /coded_by="XM_054055983.1:1844..2977"
                     /db_xref="GeneID:104056061"
ORIGIN      
        1 mrrlnrkktl nlmkeldafp kvpesyvets asggtvslia fttiafltim eftvyrdtwm
       61 kyeyevdkdf tsklrinidi tvamrcqyvg advldlaetm vasadgliye pvvfdlspqq
      121 kewqrmlqvi qsrlqeehsl qdvifksafk sastaqppre dnslqspdac rihghlyvnk
      181 vagnfhitvg kaiphprgha hlaalvshes ynfshridhl sfgelipgii npldgtekia
      241 sdhnqmfqyf itvvptklht ykisaethqf svterervin haagshgvsg ifmkydissl
      301 mvtvteehmp fwqflvrlcg iiggifsttg ilhgfgrfva eiifcrfrlg sykstsvplp
      361 dghtsnhlpl itdnsth
//
LOCUS       XP_053911959             377 aa            linear   VRT 09-MAR-2023
DEFINITION  endoplasmic reticulum-Golgi intermediate compartment protein 2
            [Cuculus canorus].
ACCESSION   XP_053911959
VERSION     XP_053911959.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055984.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..377
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..377
                     /product="endoplasmic reticulum-Golgi intermediate
                     compartment protein 2"
                     /calculated_mol_wt=42403
     Region          13..95
                     /region_name="ERGIC_N"
                     /note="Endoplasmic Reticulum-Golgi Intermediate
                     Compartment (ERGIC); pfam13850"
                     /db_xref="CDD:464000"
     Region          <170..332
                     /region_name="COPIIcoated_ERV"
                     /note="Endoplasmic reticulum vesicle transporter;
                     pfam07970"
                     /db_xref="CDD:462327"
     CDS             1..377
                     /gene="ERGIC2"
                     /coded_by="XM_054055984.1:175..1308"
                     /db_xref="GeneID:104056061"
ORIGIN      
        1 mrrlnrkktl nlmkeldafp kvpesyvets asggtvslia fttiafltim eftvyrdtwm
       61 kyeyevdkdf tsklrinidi tvamrcqyvg advldlaetm vasadgliye pvvfdlspqq
      121 kewqrmlqvi qsrlqeehsl qdvifksafk sastaqppre dnslqspdac rihghlyvnk
      181 vagnfhitvg kaiphprgha hlaalvshes ynfshridhl sfgelipgii npldgtekia
      241 sdhnqmfqyf itvvptklht ykisaethqf svterervin haagshgvsg ifmkydissl
      301 mvtvteehmp fwqflvrlcg iiggifsttg ilhgfgrfva eiifcrfrlg sykstsvplp
      361 dghtsnhlpl itdnsth
//
LOCUS       XP_053911960             377 aa            linear   VRT 09-MAR-2023
DEFINITION  endoplasmic reticulum-Golgi intermediate compartment protein 2
            [Cuculus canorus].
ACCESSION   XP_053911960
VERSION     XP_053911960.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055985.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..377
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..377
                     /product="endoplasmic reticulum-Golgi intermediate
                     compartment protein 2"
                     /calculated_mol_wt=42403
     Region          13..95
                     /region_name="ERGIC_N"
                     /note="Endoplasmic Reticulum-Golgi Intermediate
                     Compartment (ERGIC); pfam13850"
                     /db_xref="CDD:464000"
     Region          <170..332
                     /region_name="COPIIcoated_ERV"
                     /note="Endoplasmic reticulum vesicle transporter;
                     pfam07970"
                     /db_xref="CDD:462327"
     CDS             1..377
                     /gene="ERGIC2"
                     /coded_by="XM_054055985.1:178..1311"
                     /db_xref="GeneID:104056061"
ORIGIN      
        1 mrrlnrkktl nlmkeldafp kvpesyvets asggtvslia fttiafltim eftvyrdtwm
       61 kyeyevdkdf tsklrinidi tvamrcqyvg advldlaetm vasadgliye pvvfdlspqq
      121 kewqrmlqvi qsrlqeehsl qdvifksafk sastaqppre dnslqspdac rihghlyvnk
      181 vagnfhitvg kaiphprgha hlaalvshes ynfshridhl sfgelipgii npldgtekia
      241 sdhnqmfqyf itvvptklht ykisaethqf svterervin haagshgvsg ifmkydissl
      301 mvtvteehmp fwqflvrlcg iiggifsttg ilhgfgrfva eiifcrfrlg sykstsvplp
      361 dghtsnhlpl itdnsth
//
LOCUS       XP_053911961             334 aa            linear   VRT 09-MAR-2023
DEFINITION  G-protein coupled receptor 12 [Cuculus canorus].
ACCESSION   XP_053911961
VERSION     XP_053911961.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055986.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..334
                     /product="G-protein coupled receptor 12"
                     /calculated_mol_wt=36771
     Region          45..312
                     /region_name="7tmA_GPR12"
                     /note="G protein-coupled receptor 12, member of the class
                     A family of seven-transmembrane G protein-coupled
                     receptors; cd15961"
                     /db_xref="CDD:320627"
     Region          46..72
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320627"
     Region          79..104
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320627"
     Site            order(100,116..117,120..121,124,202,264,271,284,287)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:320627"
     Region          113..143
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320627"
     Region          155..175
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320627"
     Region          194..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320627"
     Region          244..274
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320627"
     Region          280..305
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320627"
     CDS             1..334
                     /gene="GPR12"
                     /coded_by="XM_054055986.1:136..1140"
                     /db_xref="GeneID:104064159"
ORIGIN      
        1 mnedrkvnls wlpqdhveas ftenasaags slvpvidpep ellvnpwdiv lctsgtlisc
       61 enavvvliif hnpslrapmf lligslalad llagigliin fvfayllqse atklvtigli
      121 vasfsasvss llaitvdryl slyyaltyns ertvtftyvm lillwgasic igllpimgwn
      181 clrdestcsv irpltknnaa vlsvsfllmf almlqlyiqi ckivmrhahq ialqhhflat
      241 shyvttrkgv stlaiilgtf aacwmpftly sliadytyps iytyatllpa tynsiinpvi
      301 yafrnqeiqk alwlvccgci psnlsqrars psdv
//
LOCUS       XP_053911962             334 aa            linear   VRT 09-MAR-2023
DEFINITION  G-protein coupled receptor 12 [Cuculus canorus].
ACCESSION   XP_053911962
VERSION     XP_053911962.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055987.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..334
                     /product="G-protein coupled receptor 12"
                     /calculated_mol_wt=36771
     Region          45..312
                     /region_name="7tmA_GPR12"
                     /note="G protein-coupled receptor 12, member of the class
                     A family of seven-transmembrane G protein-coupled
                     receptors; cd15961"
                     /db_xref="CDD:320627"
     Region          46..72
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320627"
     Region          79..104
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320627"
     Site            order(100,116..117,120..121,124,202,264,271,284,287)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:320627"
     Region          113..143
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320627"
     Region          155..175
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320627"
     Region          194..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320627"
     Region          244..274
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320627"
     Region          280..305
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320627"
     CDS             1..334
                     /gene="GPR12"
                     /coded_by="XM_054055987.1:123..1127"
                     /db_xref="GeneID:104064159"
ORIGIN      
        1 mnedrkvnls wlpqdhveas ftenasaags slvpvidpep ellvnpwdiv lctsgtlisc
       61 enavvvliif hnpslrapmf lligslalad llagigliin fvfayllqse atklvtigli
      121 vasfsasvss llaitvdryl slyyaltyns ertvtftyvm lillwgasic igllpimgwn
      181 clrdestcsv irpltknnaa vlsvsfllmf almlqlyiqi ckivmrhahq ialqhhflat
      241 shyvttrkgv stlaiilgtf aacwmpftly sliadytyps iytyatllpa tynsiinpvi
      301 yafrnqeiqk alwlvccgci psnlsqrars psdv
//
LOCUS       XP_053911963             205 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850906 [Cuculus canorus].
ACCESSION   XP_053911963
VERSION     XP_053911963.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055988.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..205
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..205
                     /product="uncharacterized protein LOC128850906"
                     /calculated_mol_wt=23460
     Region          78..>152
                     /region_name="CY"
                     /note="Cystatin-like domain; Cystatins are a family of
                     cysteine protease inhibitors that occur mainly as single
                     domain proteins. However some extracellular proteins such
                     as kininogen, His-rich glycoprotein and fetuin also
                     contain these domains; cl09238"
                     /db_xref="CDD:447698"
     Site            order(120..122,124)
                     /site_type="active"
                     /note="putative proteinase inhibition site [active]"
                     /db_xref="CDD:238002"
     CDS             1..205
                     /gene="LOC128850906"
                     /coded_by="XM_054055988.1:2147..2764"
                     /db_xref="GeneID:128850906"
ORIGIN      
        1 mtacfllifk sewcwemlsa tlirflstet gssryksydr mppvyipgaw clcsdctegp
       61 ssekpltaet lpatimsgqf sdpmtptpei qeianrvrpk lekevgrryp iflavlyryq
      121 mvlgtnycik vksqlekevg raftifnavl yryqkfvgts ylikvevadg dynhllvfqp
      181 pldrkvgpel vrywtgktrh dplec
//
LOCUS       XP_053911964             171 aa            linear   VRT 09-MAR-2023
DEFINITION  stefin-C-like [Cuculus canorus].
ACCESSION   XP_053911964
VERSION     XP_053911964.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055989.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..171
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..171
                     /product="stefin-C-like"
                     /calculated_mol_wt=19080
     Region          78..>138
                     /region_name="CY"
                     /note="Cystatin-like domain; Cystatins are a family of
                     cysteine protease inhibitors that occur mainly as single
                     domain proteins. However some extracellular proteins such
                     as kininogen, His-rich glycoprotein and fetuin also
                     contain these domains; cl09238"
                     /db_xref="CDD:447698"
     Site            order(120..122,124)
                     /site_type="active"
                     /note="putative proteinase inhibition site [active]"
                     /db_xref="CDD:238002"
     CDS             1..171
                     /gene="LOC128850907"
                     /coded_by="XM_054055989.1:264..779"
                     /db_xref="GeneID:128850907"
ORIGIN      
        1 mtacfllifk sewcwemlga tlirflstet gssrykscdp mppayipgaw clcsdctegp
       61 ssetpltaet lpatimsgqf sdpmtptpei qeianrvksq lekevgraft ifnavlyryq
      121 ksvgtsylik vevadgdfnh llvfqppldr kvgpelvryw tgktrhdple c
//
LOCUS       XP_053911965              72 aa            linear   VRT 09-MAR-2023
DEFINITION  mitotic-spindle organizing protein 1 [Cuculus canorus].
ACCESSION   XP_053911965
VERSION     XP_053911965.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055990.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..72
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..72
                     /product="mitotic-spindle organizing protein 1"
                     /calculated_mol_wt=7639
     Region          15..57
                     /region_name="MOZART1"
                     /note="Mitotic-spindle organizing gamma-tubulin ring
                     associated; pfam12554"
                     /db_xref="CDD:432631"
     CDS             1..72
                     /gene="MZT1"
                     /coded_by="XM_054055990.1:32..250"
                     /db_xref="GeneID:104054974"
ORIGIN      
        1 masnaasvna vretmdvlfe isrilntgld metlsicvrl ceqginpeal ssvikelrka
       61 tealkaaenm tg
//
LOCUS       XP_053911966             330 aa            linear   VRT 09-MAR-2023
DEFINITION  tumor necrosis factor ligand superfamily member 11 [Cuculus
            canorus].
ACCESSION   XP_053911966
VERSION     XP_053911966.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055991.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..330
                     /product="tumor necrosis factor ligand superfamily member
                     11"
                     /calculated_mol_wt=36530
     Site            order(180,228,230,289,294,320,324)
                     /site_type="other"
                     /note="trimer interface [polypeptide binding]"
                     /db_xref="CDD:238108"
     Region          199..326
                     /region_name="TNF"
                     /note="TNF(Tumour Necrosis Factor) family; pfam00229"
                     /db_xref="CDD:425540"
     Site            order(201..202,207,252,259,264)
                     /site_type="active"
                     /note="receptor binding sites [active]"
                     /db_xref="CDD:238108"
     CDS             1..330
                     /gene="TNFSF11"
                     /coded_by="XM_054055991.1:22..1014"
                     /db_xref="GeneID:104056514"
ORIGIN      
        1 mpgssaeplg acgaarakmr rasrdytkyl rgseemggga ahesapappp paappapsrt
       61 llaalvllal gqvvcslalf lyfraqmdpt riskehahcv rtlfghqent dfhdasfenq
      121 eaklmpescr smkqalqrav qkevqrvmgr apprpekaam ealgmdlyqr kkpgkqpfah
      181 liiddknips gtrkvnltsw hhdkgqanls nmtfsdgklv vnqdgfyyly anicfrhhet
      241 sgnltkrglq lmvymtktnl kirrsdvlmk ggstkywsgn sefhfysvnv ggffklksge
      301 misiqvsnpl lldssqeaty fgafkvrdld
//
LOCUS       XP_009554902             507 aa            linear   VRT 09-MAR-2023
DEFINITION  cytochrome P450 2D17 [Cuculus canorus].
ACCESSION   XP_009554902
VERSION     XP_009554902.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556607.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554902.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..507
                     /product="cytochrome P450 2D17"
                     /calculated_mol_wt=58239
     Region          76..502
                     /region_name="cytochrome_P450"
                     /note="cytochrome P450 (CYP) superfamily; cl41757"
                     /db_xref="CDD:477761"
     Site            order(139,143,150,197,311..312,315..316,319..320,323,374,
                     384,386,409,445..447,451..455,458..459)
                     /site_type="other"
                     /note="heme binding site [chemical binding]"
                     /db_xref="CDD:410651"
     Site            order(223..224,311,314..315,319,382..385)
                     /site_type="other"
                     /note="chemical substrate binding pocket [chemical
                     binding]"
                     /db_xref="CDD:410651"
     CDS             1..507
                     /gene="LOC104055481"
                     /coded_by="XM_009556607.2:204..1727"
                     /db_xref="GeneID:104055481"
ORIGIN      
        1 mslllwlgsq lspswsnisv lgvfftvftl lldfmkrrrq wsryppgpvs lpfigtmlyv
       61 dfqnpllsfk qlrekfgnvf slqncwsnlv vlngyksvke alvhksedia drpyfamyeh
      121 lgygvksegi vfarygrawk elrkftfstl rnfgmgkkpl eerlveearf lcsavndeeg
      181 rpfdihcavn navcnvicti vygerfnygd eafkkllklf qdalkedsgf lpqllnvvpi
      241 lsripglsqk vfqaqkgvmd fvdvlikkhm etwnpahird ftdaflkeme kgkeaeengf
      301 hfnnlrlvta dlftagsett sttlrwafly mllypevqsk vhaeidkvig rdrsptmedq
      361 gsmpytnavi hevqrcgdvv piglphmtyr dtelqgffip kgttvitnls svlkdesvwe
      421 kpnefypehf ldadgrfvkp daflpfsagr rvclgeqlar melfiffttl mqkftfvlpe
      481 dqprpridsh fsflntphpy qlkavpr
//
LOCUS       XP_009559215             128 aa            linear   VRT 09-MAR-2023
DEFINITION  trefoil factor 2 [Cuculus canorus].
ACCESSION   XP_009559215
VERSION     XP_009559215.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560920.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009559215.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..128
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..128
                     /product="trefoil factor 2"
                     /calculated_mol_wt=13914
     Region          30..73
                     /region_name="PD"
                     /note="P or trefoil or TFF domain; smart00018"
                     /db_xref="CDD:197472"
     Site            order(45,67..68)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:238059"
     Site            order(60,67)
                     /site_type="active"
                     /note="putative binding specificity loop [active]"
                     /db_xref="CDD:238059"
     Region          81..120
                     /region_name="PD"
                     /note="P or trefoil or TFF domain; smart00018"
                     /db_xref="CDD:197472"
     Site            order(94,116..117)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:238059"
     Site            order(109,116)
                     /site_type="active"
                     /note="putative binding specificity loop [active]"
                     /db_xref="CDD:238059"
     CDS             1..128
                     /gene="LOC104059271"
                     /coded_by="XM_009560920.2:10..396"
                     /db_xref="GeneID:104059271"
ORIGIN      
        1 mdlkvisvls ailvlalstl aegrvpptrc qckqalserr ncgypgisaa ecrkagccfn
       61 asysgvpwcf spkvkrvkkl cptepharrn cgfpgitakq cerkgccfra hpagvpwcfy
      121 hhvveegc
//
LOCUS       XP_053911968             666 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP-ribosylation factor-binding protein GGA1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053911968
VERSION     XP_053911968.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055993.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..666
                     /product="ADP-ribosylation factor-binding protein GGA1
                     isoform X1"
                     /calculated_mol_wt=73227
     Region          5..142
                     /region_name="VHS_GGA1"
                     /note="VHS (Vps27/Hrs/STAM) domain of ADP-ribosylation
                     factor-binding protein GGA1; cd17009"
                     /db_xref="CDD:340806"
     Site            order(7,11,16,45,49,52..55,58,102)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:340806"
     Site            order(23..24,27,31,71..72)
                     /site_type="other"
                     /note="putative intraprotein/interprotein binding site
                     [polypeptide binding]"
                     /db_xref="CDD:340806"
     Site            order(83..85,88,97..98,127,134,138)
                     /site_type="other"
                     /note="acidic-cluster-dileucine motif interaction site
                     [polypeptide binding]"
                     /db_xref="CDD:340806"
     Region          165..203
                     /region_name="GGA_N-GAT"
                     /note="N-terminal extension of GAT domain; pfam18308"
                     /db_xref="CDD:465702"
     Region          206..293
                     /region_name="GAT_GGA1_GGA2"
                     /note="canonical GAT domain found in ADP-ribosylation
                     factor (Arf)-binding proteins GGA1 and GGA2; cd14239"
                     /db_xref="CDD:410586"
     Site            order(216,219..220,223,226..227,230,239..240,242..243,
                     246..247,250)
                     /site_type="other"
                     /note="putative ubiquitin binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410586"
     Site            order(252,255..256,258..260,262..263,265,267,269,276,
                     279..280,283)
                     /site_type="other"
                     /note="Rabaptin5 binding site [polypeptide binding]"
                     /db_xref="CDD:410586"
     Region          369..>632
                     /region_name="Atrophin-1"
                     /note="Atrophin-1 family; pfam03154"
                     /db_xref="CDD:460830"
     Region          544..658
                     /region_name="Alpha_adaptinC2"
                     /note="Adaptin C-terminal domain; smart00809"
                     /db_xref="CDD:197886"
     CDS             1..666
                     /gene="GGA1"
                     /coded_by="XM_054055993.1:128..2128"
                     /db_xref="GeneID:104065870"
ORIGIN      
        1 mepetleari nkatsplnkd ldwdginafc eqlnkelegp platrllahk iqspqeweai
       61 qaltvlescm kscgkrfhde vgkfrflnel ikvvspkylg srtsekvksk ilelmyswtl
      121 glphevkise ayqmlkkqgi vkcdpklpdd apfppppprp kniifddeek sktlarllks
      181 shpedlraan klikemvqed qkrmekiskr vnaieevnnn vklltemltn yskgettesn
      241 edlmkelyqr cermrpmlfr lasdtednde alaeilqand nltqvinlyk qlvrgeeing
      301 eavagplrgs tsalldlsgl dlpatgpsyp alptlsrgsa vpvpdqagsv sllddelmsl
      361 glndpaphpa qaadssgwns fqlsdsnels ttpvmatppv ktdvgtsspk psnttsgldd
      421 ldllgktllq qslppesqqv rwekqqalpr ltlrdlqnrs stgttahnps tlpvlqsvsp
      481 nttlplnsel papstlpkaa ttpagsttvp prppatvlpq eislanitvp lesikpssil
      541 pvtvydqhgf rvlfhfakda lperpdvlvv vismlstapq pirnivfqsa vpkvmkvklq
      601 ppsgtelpaf npivhpsait qvlllanpqk ekvrlryklt ftmgeqtfne mgdvdqfppp
      661 eswgnl
//
LOCUS       XP_053911969             597 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP-ribosylation factor-binding protein GGA1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053911969
VERSION     XP_053911969.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055994.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..597
                     /product="ADP-ribosylation factor-binding protein GGA1
                     isoform X2"
                     /calculated_mol_wt=65485
     Region          <1..73
                     /region_name="VHS_ENTH_ANTH"
                     /note="VHS, ENTH and ANTH domain superfamily; cl02544"
                     /db_xref="CDD:470608"
     Region          96..134
                     /region_name="GGA_N-GAT"
                     /note="N-terminal extension of GAT domain; pfam18308"
                     /db_xref="CDD:465702"
     Region          137..224
                     /region_name="GAT_GGA1_GGA2"
                     /note="canonical GAT domain found in ADP-ribosylation
                     factor (Arf)-binding proteins GGA1 and GGA2; cd14239"
                     /db_xref="CDD:410586"
     Site            order(147,150..151,154,157..158,161,170..171,173..174,
                     177..178,181)
                     /site_type="other"
                     /note="putative ubiquitin binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410586"
     Site            order(183,186..187,189..191,193..194,196,198,200,207,
                     210..211,214)
                     /site_type="other"
                     /note="Rabaptin5 binding site [polypeptide binding]"
                     /db_xref="CDD:410586"
     Region          <254..450
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          475..589
                     /region_name="Alpha_adaptinC2"
                     /note="Adaptin C-terminal domain; smart00809"
                     /db_xref="CDD:197886"
     CDS             1..597
                     /gene="GGA1"
                     /coded_by="XM_054055994.1:101..1894"
                     /db_xref="GeneID:104065870"
ORIGIN      
        1 mkscgkrfhd evgkfrflne likvvspkyl gsrtsekvks kilelmyswt lglphevkis
       61 eayqmlkkqg ivkcdpklpd dapfpppppr pkniifddee ksktlarllk sshpedlraa
      121 nklikemvqe dqkrmekisk rvnaieevnn nvklltemlt nyskgettes nedlmkelyq
      181 rcermrpmlf rlasdtednd ealaeilqan dnltqvinly kqlvrgeein geavagplrg
      241 stsalldlsg ldlpatgpsy palptlsrgs avpvpdqags vsllddelms lglndpaphp
      301 aqaadssgwn sfqlsdsnel sttpvmatpp vktdvgtssp kpsnttsgld dldllgktll
      361 qqslppesqq vrwekqqalp rltlrdlqnr sstgttahnp stlpvlqsvs pnttlplnse
      421 lpapstlpka attpagsttv pprppatvlp qeislanitv plesikpssi lpvtvydqhg
      481 frvlfhfakd alperpdvlv vvismlstap qpirnivfqs avpkvmkvkl qppsgtelpa
      541 fnpivhpsai tqvlllanpq kekvrlrykl tftmgeqtfn emgdvdqfpp peswgnl
//
LOCUS       XP_053911970             936 aa            linear   VRT 09-MAR-2023
DEFINITION  contactin-5 isoform X1 [Cuculus canorus].
ACCESSION   XP_053911970
VERSION     XP_053911970.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055995.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..936
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..936
                     /product="contactin-5 isoform X1"
                     /calculated_mol_wt=102385
     Region          <1..29
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          6..11
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409435"
     Region          20..23
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409435"
     Region          38..123
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          49..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409392"
     Region          63..67
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409392"
     Region          88..92
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409392"
     Region          102..107
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409392"
     Region          118..121
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409392"
     Region          136..223
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          154..158
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409357"
     Region          167..171
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409357"
     Region          188..192
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409357"
     Region          202..207
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409357"
     Region          215..218
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409357"
     Region          228..311
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          243..247
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:143205"
     Region          256..260
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:143205"
     Region          277..281
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:143205"
     Region          291..296
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:143205"
     Region          304..307
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:143205"
     Region          316..404
                     /region_name="Ig5_Contactin"
                     /note="Fifth immunoglobulin (Ig) domain of contactin;
                     cd04969"
                     /db_xref="CDD:409358"
     Region          316..321
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409358"
     Region          324..329
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409358"
     Region          333..340
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409358"
     Region          348..352
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409358"
     Region          366..369
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409358"
     Region          370..375
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409358"
     Region          383..391
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409358"
     Region          397..404
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409358"
     Region          406..507
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          425..429
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409439"
     Region          440..444
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409439"
     Region          469..473
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409439"
     Region          483..488
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409439"
     Region          496..499
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409439"
     Region          507..602
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(507,576,591)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          <554..>815
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(592..593,595..596)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          813..898
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(889..890,892..893)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..936
                     /gene="CNTN5"
                     /coded_by="XM_054055995.1:154..2964"
                     /db_xref="GeneID:104058785"
ORIGIN      
        1 mkdsgqyqcl ttnilgsils reavlqfayl gnfsgrtrsa vsvregqgvv lmcspplhsp
       61 eiiyswvfne fpsfvsedsr rfisqetgnl yiskvqtsdv gsyiclvknt vtnarvlspp
      121 tpltlrndgv mgeyepkiev hfpytvtaar gstvkmecfa lgnpvptisw rkvnghnpsk
      181 arlrksqavl eipnvqleda gmyeckaens rgrnvfrgql qvytyphwve klndtqldsg
      241 dqlrweckat gkprptyrwl kngvplwpqs rietvngvlm ihsvnlsdag myqclaenky
      301 gtiyasaelk ilasapsfpl nqmrktiiit kgqeivieck pqaspkptit wkkgdkplre
      361 skritilphg slrilnasks degrylcqgv nifgsaeiia slsvkeptri eltpkkielt
      421 vgesivlsck aihdstldvt fywtlngqpi dfekegghfe sikaqassad lmirnillmh
      481 agrygcrvqt aadtvsdete llvrgppgpp gvviveeitd ttatlswspg adnhspisly
      541 nlqarspfsl gwqtvktvpd visgdmesam avelnpwvey efrvvatnki gtgdpsapsr
      601 virtneavpk tppanvsgrs grrhelviaw epvseefqng egfgyivafr pngtrgwkek
      661 mvtssdaskf iyrdesvppl tpfevkvgvy nnkgdgpfsp ivvicsaege ptaapidvka
      721 tslsvseilv awkhnkeslg rpegfevgyw kdmeqeeaae kvktegndss illtglegnt
      781 lyhltvrayn aagygppsta vraatkkspp sqapsnimwi qdgshvslgw epvrplanes
      841 dvmgykvlfr qegqsnsqvi etqktsavvl lpdvgvyiie vcavseggdg taspqirvps
      901 fsggkvtsaq stlhvlstss ssvtlllalm fpsasw
//
LOCUS       XP_053911971             883 aa            linear   VRT 09-MAR-2023
DEFINITION  contactin-5 isoform X2 [Cuculus canorus].
ACCESSION   XP_053911971
VERSION     XP_053911971.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055996.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..883
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..883
                     /product="contactin-5 isoform X2"
                     /calculated_mol_wt=96812
     Region          <1..29
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          6..11
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409435"
     Region          20..23
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409435"
     Region          38..123
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          49..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409392"
     Region          63..67
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409392"
     Region          88..92
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409392"
     Region          102..107
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409392"
     Region          118..121
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409392"
     Region          136..223
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          154..158
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409357"
     Region          167..171
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409357"
     Region          188..192
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409357"
     Region          202..207
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409357"
     Region          215..218
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409357"
     Region          228..311
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          243..247
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:143205"
     Region          256..260
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:143205"
     Region          277..281
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:143205"
     Region          291..296
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:143205"
     Region          304..307
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:143205"
     Region          316..404
                     /region_name="Ig5_Contactin"
                     /note="Fifth immunoglobulin (Ig) domain of contactin;
                     cd04969"
                     /db_xref="CDD:409358"
     Region          316..321
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409358"
     Region          324..329
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409358"
     Region          333..340
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409358"
     Region          348..352
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409358"
     Region          366..369
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409358"
     Region          370..375
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409358"
     Region          383..391
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409358"
     Region          397..404
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409358"
     Region          406..506
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          425..429
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409439"
     Region          440..444
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409439"
     Region          469..473
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409439"
     Region          483..488
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409439"
     Region          <494..>762
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          496..499
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409439"
     Region          760..845
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(836..837,839..840)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..883
                     /gene="CNTN5"
                     /coded_by="XM_054055996.1:154..2805"
                     /db_xref="GeneID:104058785"
ORIGIN      
        1 mkdsgqyqcl ttnilgsils reavlqfayl gnfsgrtrsa vsvregqgvv lmcspplhsp
       61 eiiyswvfne fpsfvsedsr rfisqetgnl yiskvqtsdv gsyiclvknt vtnarvlspp
      121 tpltlrndgv mgeyepkiev hfpytvtaar gstvkmecfa lgnpvptisw rkvnghnpsk
      181 arlrksqavl eipnvqleda gmyeckaens rgrnvfrgql qvytyphwve klndtqldsg
      241 dqlrweckat gkprptyrwl kngvplwpqs rietvngvlm ihsvnlsdag myqclaenky
      301 gtiyasaelk ilasapsfpl nqmrktiiit kgqeivieck pqaspkptit wkkgdkplre
      361 skritilphg slrilnasks degrylcqgv nifgsaeiia slsvkeptri eltpkkielt
      421 vgesivlsck aihdstldvt fywtlngqpi dfekegghfe sikaqassad lmirnillmh
      481 agrygcrvqt aadtvsdete llvrvpdvis gdmesamave lnpwveyefr vvatnkigtg
      541 dpsapsrvir tneavpktpp anvsgrsgrr helviawepv seefqngegf gyivafrpng
      601 trgwkekmvt ssdaskfiyr desvppltpf evkvgvynnk gdgpfspivv icsaegepta
      661 apidvkatsl svseilvawk hnkeslgrpe gfevgywkdm eqeeaaekvk tegndssill
      721 tglegntlyh ltvraynaag ygppstavra atkksppsqa psnimwiqdg shvslgwepv
      781 rplanesdvm gykvlfrqeg qsnsqvietq ktsavvllpd vgvyiievca vseggdgtas
      841 pqirvpsfsg gkvtsaqstl hvlstssssv tlllalmfps asw
//
LOCUS       XP_053911973             749 aa            linear   VRT 09-MAR-2023
DEFINITION  progesterone receptor [Cuculus canorus].
ACCESSION   XP_053911973
VERSION     XP_053911973.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055998.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..749
                     /product="progesterone receptor"
                     /calculated_mol_wt=82304
     Region          1..381
                     /region_name="Prog_receptor"
                     /note="Progesterone receptor; pfam02161"
                     /db_xref="CDD:460470"
     Region          380..457
                     /region_name="NR_DBD_GR_PR"
                     /note="DNA-binding domain of glucocorticoid receptor (GR)
                     is composed of two C4-type zinc fingers; cd07172"
                     /db_xref="CDD:143546"
     Site            order(384,387,401,404,420,426,436,439)
                     /site_type="other"
                     /note="zinc binding site [ion binding]"
                     /db_xref="CDD:143546"
     Site            order(394..396,402..403,405..406,409..410,418,433..434,
                     440)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143546"
     Site            order(419..421,423,426..427,431..432,435)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:143546"
     Region          502..749
                     /region_name="NR_LBD_PR"
                     /note="Ligand binding domain of the progesterone receptor,
                     a member of the nuclear hormone receptor; cd07074"
                     /db_xref="CDD:132759"
     Site            order(531,534..535,537..538,541,572,575..576,582,594,610,
                     613..614,617,703,706..707,710,719,721,725)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:132759"
     Site            order(546,550,560..561,564,724,727,731)
                     /site_type="active"
                     /note="putative coactivator recognition site [active]"
                     /db_xref="CDD:132759"
     Site            order(701,705,709,712..713,730,734,737..738)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:132759"
     CDS             1..749
                     /gene="PGR"
                     /coded_by="XM_054055998.1:149..2398"
                     /db_xref="GeneID:104058786"
ORIGIN      
        1 mtevkakepr apardgavll qgqpgrdpfr reaepvdisl dgllyakssd eddddeeeee
       61 eeqpqhqpge edrdslpyrl gsgslsdkds ldtvldtfla paahassava swsffgteap
      121 sdapmsrvps qkpvesdaev pgpsqppprp aplwphedsk prsggggcae gpsetpkgen
      181 pelpagepgq eylhvpllpl nsaflasrtr qlldvseyeg cgsssppapd pagylyppse
      241 akegqfaygd fqpalkikee glalpapypa gratpvagca dfpqpsragq epslecvlyk
      301 teptllagay gpaapdslps tsaappgiyp plglnghqpl gfpaamlkeg lpqlcppylg
      361 yarpdtetsq ssqfafdslp qkiclicgde asgchygvlt cgsckvffkr amegqhnylc
      421 agrndcivdk irrkncpacr lrkccqagmv lggrkfkkln kikvvrtldv alqqpatlqd
      481 esqsltqrls fspnqeiqfv ppmisvlrgi epevvyagyd ntkpetpssl ltslnhlcer
      541 qllcvvkwsk llpgfrnlhi ddqitliqys wmslmvfamg wrsykhvsgq mlyfapdlil
      601 neqrmkessf yslclsmwql pqefvrlqvs qeeflcmkal lllntipleg lrsqsqfdem
      661 rtsyirelvk aiglrqkgvv ansqrfyqlt klmdsmhdlv kqlhlfclnt flqsralsve
      721 fpemmsevia aqlpkilagm vkpllfhkk
//
LOCUS       XP_053911974             162 aa            linear   VRT 09-MAR-2023
DEFINITION  caveolin-2 [Cuculus canorus].
ACCESSION   XP_053911974
VERSION     XP_053911974.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054055999.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..162
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..162
                     /product="caveolin-2"
                     /calculated_mol_wt=18169
     Region          38..160
                     /region_name="Caveolin"
                     /note="pfam01146"
                     /db_xref="CDD:460081"
     CDS             1..162
                     /gene="CAV2"
                     /coded_by="XM_054055999.1:59..547"
                     /db_xref="GeneID:104064339"
ORIGIN      
        1 mgletekadt rifmdddnfp rsggpalsea ekgaeeqldr dphgmnahlq lgfedviaep
       61 elthsfdkvw icshalfels kyliykfltl vlaiplalvv gilfavlscl hiwivvpfvk
      121 tclmvlpsvq viwksmtdvf ivpffqslgr cfamvnirld qe
//
LOCUS       XP_053911975             439 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-sensitive inward rectifier potassium channel 15 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053911975
VERSION     XP_053911975.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056000.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..439
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..439
                     /product="ATP-sensitive inward rectifier potassium channel
                     15 isoform X1"
                     /calculated_mol_wt=50244
     Region          94..235
                     /region_name="IRK"
                     /note="Inward rectifier potassium channel transmembrane
                     domain; pfam01007"
                     /db_xref="CDD:460023"
     Region          242..413
                     /region_name="IRK_C"
                     /note="Inward rectifier potassium channel C-terminal
                     domain; pfam17655"
                     /db_xref="CDD:465439"
     CDS             1..439
                     /gene="KCNJ15"
                     /coded_by="XM_054056000.1:170..1489"
                     /db_xref="GeneID:104059225"
ORIGIN      
        1 mtirsrkesd hcsftvyihc pfvkspspae rllqdllgaf sspdgttlkw hktailyrte
       61 avrmettkin msrvplvngg idtamlkahk prvmsknghs nvridkvdgi yllylqdlwt
      121 tvidmkwryk ltlfaatfvm twflfgviyy aiaflhgdle inkftpkhep cvknvdsltg
      181 aflfslesqt tigygfrfit eecphaifll vaqlvittli eifitgtfla kiarpkkrae
      241 tikfshcavi tkhngelclv irvanmrksl liqcqlsgkl lqtyetkege rillnqatvk
      301 fnvdsssesp flilpltfyh ildessplrd ltpqnlkekd felvvllnat vestsavcqs
      361 rtsyipeeih wgyefvpvvs lspngkyvad fsqfekirrs tdstfysmds ekqkleekyr
      421 qedqrerelr tmllqqsnv
//
LOCUS       XP_053911976             426 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-sensitive inward rectifier potassium channel 15 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053911976
VERSION     XP_053911976.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056001.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..426
                     /product="ATP-sensitive inward rectifier potassium channel
                     15 isoform X2"
                     /calculated_mol_wt=48789
     Region          81..222
                     /region_name="IRK"
                     /note="Inward rectifier potassium channel transmembrane
                     domain; pfam01007"
                     /db_xref="CDD:460023"
     Region          229..400
                     /region_name="IRK_C"
                     /note="Inward rectifier potassium channel C-terminal
                     domain; pfam17655"
                     /db_xref="CDD:465439"
     CDS             1..426
                     /gene="KCNJ15"
                     /coded_by="XM_054056001.1:170..1450"
                     /db_xref="GeneID:104059225"
ORIGIN      
        1 mtirsrkesd hcsftaerll qdllgafssp dgttlkwhkt ailyrteavr mettkinmsr
       61 vplvnggidt amlkahkprv msknghsnvr idkvdgiyll ylqdlwttvi dmkwrykltl
      121 faatfvmtwf lfgviyyaia flhgdleink ftpkhepcvk nvdsltgafl fslesqttig
      181 ygfrfiteec phaifllvaq lvittlieif itgtflakia rpkkraetik fshcavitkh
      241 ngelclvirv anmrkslliq cqlsgkllqt yetkegeril lnqatvkfnv dsssespfli
      301 lpltfyhild essplrdltp qnlkekdfel vvllnatves tsavcqsrts yipeeihwgy
      361 efvpvvslsp ngkyvadfsq fekirrstds tfysmdsekq kleekyrqed qrerelrtml
      421 lqqsnv
//
LOCUS       XP_053911977             425 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-sensitive inward rectifier potassium channel 15 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053911977
VERSION     XP_053911977.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056002.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..425
                     /product="ATP-sensitive inward rectifier potassium channel
                     15 isoform X3"
                     /calculated_mol_wt=48610
     Region          80..221
                     /region_name="IRK"
                     /note="Inward rectifier potassium channel transmembrane
                     domain; pfam01007"
                     /db_xref="CDD:460023"
     Region          228..399
                     /region_name="IRK_C"
                     /note="Inward rectifier potassium channel C-terminal
                     domain; pfam17655"
                     /db_xref="CDD:465439"
     CDS             1..425
                     /gene="KCNJ15"
                     /coded_by="XM_054056002.1:16..1293"
                     /db_xref="GeneID:104059225"
ORIGIN      
        1 miyihcpfvk spspaerllq dllgafsspd gttlkwhkta ilyrteavrm ettkinmsrv
       61 plvnggidta mlkahkprvm sknghsnvri dkvdgiylly lqdlwttvid mkwrykltlf
      121 aatfvmtwfl fgviyyaiaf lhgdleinkf tpkhepcvkn vdsltgaflf slesqttigy
      181 gfrfiteecp haifllvaql vittlieifi tgtflakiar pkkraetikf shcavitkhn
      241 gelclvirva nmrkslliqc qlsgkllqty etkegerill nqatvkfnvd sssespflil
      301 pltfyhilde ssplrdltpq nlkekdfelv vllnatvest savcqsrtsy ipeeihwgye
      361 fvpvvslspn gkyvadfsqf ekirrstdst fysmdsekqk leekyrqedq rerelrtmll
      421 qqsnv
//
LOCUS       XP_053911978             412 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-sensitive inward rectifier potassium channel 15 isoform X4
            [Cuculus canorus].
ACCESSION   XP_053911978
VERSION     XP_053911978.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056003.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..412
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..412
                     /product="ATP-sensitive inward rectifier potassium channel
                     15 isoform X4"
                     /calculated_mol_wt=47170
     Region          67..208
                     /region_name="IRK"
                     /note="Inward rectifier potassium channel transmembrane
                     domain; pfam01007"
                     /db_xref="CDD:460023"
     Region          215..386
                     /region_name="IRK_C"
                     /note="Inward rectifier potassium channel C-terminal
                     domain; pfam17655"
                     /db_xref="CDD:465439"
     CDS             1..412
                     /gene="KCNJ15"
                     /coded_by="XM_054056003.1:5..1243"
                     /db_xref="GeneID:104059225"
ORIGIN      
        1 mterllqdll gafsspdgtt lkwhktaily rteavrmett kinmsrvplv nggidtamlk
       61 ahkprvmskn ghsnvridkv dgiyllylqd lwttvidmkw rykltlfaat fvmtwflfgv
      121 iyyaiaflhg dleinkftpk hepcvknvds ltgaflfsle sqttigygfr fiteecphai
      181 fllvaqlvit tlieifitgt flakiarpkk raetikfshc avitkhngel clvirvanmr
      241 kslliqcqls gkllqtyetk egerillnqa tvkfnvdsss espflilplt fyhildessp
      301 lrdltpqnlk ekdfelvvll natvestsav cqsrtsyipe eihwgyefvp vvslspngky
      361 vadfsqfeki rrstdstfys mdsekqklee kyrqedqrer elrtmllqqs nv
//
LOCUS       XP_009559159             404 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-sensitive inward rectifier potassium channel 15 isoform X5
            [Cuculus canorus].
ACCESSION   XP_009559159
VERSION     XP_009559159.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560864.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009559159.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..404
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..404
                     /product="ATP-sensitive inward rectifier potassium channel
                     15 isoform X5"
                     /calculated_mol_wt=46297
     Region          59..200
                     /region_name="IRK"
                     /note="Inward rectifier potassium channel transmembrane
                     domain; pfam01007"
                     /db_xref="CDD:460023"
     Region          207..378
                     /region_name="IRK_C"
                     /note="Inward rectifier potassium channel C-terminal
                     domain; pfam17655"
                     /db_xref="CDD:465439"
     CDS             1..404
                     /gene="KCNJ15"
                     /coded_by="XM_009560864.2:324..1538"
                     /db_xref="GeneID:104059225"
ORIGIN      
        1 mslfralkkt csvikkclfs retteavrme ttkinmsrvp lvnggidtam lkahkprvms
       61 knghsnvrid kvdgiyllyl qdlwttvidm kwrykltlfa atfvmtwflf gviyyaiafl
      121 hgdleinkft pkhepcvknv dsltgaflfs lesqttigyg frfiteecph aifllvaqlv
      181 ittlieifit gtflakiarp kkraetikfs hcavitkhng elclvirvan mrkslliqcq
      241 lsgkllqtye tkegerilln qatvkfnvds ssespflilp ltfyhildes splrdltpqn
      301 lkekdfelvv llnatvests avcqsrtsyi peeihwgyef vpvvslspng kyvadfsqfe
      361 kirrstdstf ysmdsekqkl eekyrqedqr erelrtmllq qsnv
//
LOCUS       XP_053911979             376 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-sensitive inward rectifier potassium channel 15 isoform X6
            [Cuculus canorus].
ACCESSION   XP_053911979
VERSION     XP_053911979.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056004.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..376
                     /product="ATP-sensitive inward rectifier potassium channel
                     15 isoform X6"
                     /calculated_mol_wt=43068
     Region          31..172
                     /region_name="IRK"
                     /note="Inward rectifier potassium channel transmembrane
                     domain; pfam01007"
                     /db_xref="CDD:460023"
     Region          179..350
                     /region_name="IRK_C"
                     /note="Inward rectifier potassium channel C-terminal
                     domain; pfam17655"
                     /db_xref="CDD:465439"
     CDS             1..376
                     /gene="KCNJ15"
                     /coded_by="XM_054056004.1:232..1362"
                     /db_xref="GeneID:104059225"
ORIGIN      
        1 mettkinmsr vplvnggidt amlkahkprv msknghsnvr idkvdgiyll ylqdlwttvi
       61 dmkwrykltl faatfvmtwf lfgviyyaia flhgdleink ftpkhepcvk nvdsltgafl
      121 fslesqttig ygfrfiteec phaifllvaq lvittlieif itgtflakia rpkkraetik
      181 fshcavitkh ngelclvirv anmrkslliq cqlsgkllqt yetkegeril lnqatvkfnv
      241 dsssespfli lpltfyhild essplrdltp qnlkekdfel vvllnatves tsavcqsrts
      301 yipeeihwgy efvpvvslsp ngkyvadfsq fekirrstds tfysmdsekq kleekyrqed
      361 qrerelrtml lqqsnv
//
LOCUS       XP_053911980             376 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-sensitive inward rectifier potassium channel 15 isoform X6
            [Cuculus canorus].
ACCESSION   XP_053911980
VERSION     XP_053911980.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056005.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..376
                     /product="ATP-sensitive inward rectifier potassium channel
                     15 isoform X6"
                     /calculated_mol_wt=43068
     Region          31..172
                     /region_name="IRK"
                     /note="Inward rectifier potassium channel transmembrane
                     domain; pfam01007"
                     /db_xref="CDD:460023"
     Region          179..350
                     /region_name="IRK_C"
                     /note="Inward rectifier potassium channel C-terminal
                     domain; pfam17655"
                     /db_xref="CDD:465439"
     CDS             1..376
                     /gene="KCNJ15"
                     /coded_by="XM_054056005.1:459..1589"
                     /db_xref="GeneID:104059225"
ORIGIN      
        1 mettkinmsr vplvnggidt amlkahkprv msknghsnvr idkvdgiyll ylqdlwttvi
       61 dmkwrykltl faatfvmtwf lfgviyyaia flhgdleink ftpkhepcvk nvdsltgafl
      121 fslesqttig ygfrfiteec phaifllvaq lvittlieif itgtflakia rpkkraetik
      181 fshcavitkh ngelclvirv anmrkslliq cqlsgkllqt yetkegeril lnqatvkfnv
      241 dsssespfli lpltfyhild essplrdltp qnlkekdfel vvllnatves tsavcqsrts
      301 yipeeihwgy efvpvvslsp ngkyvadfsq fekirrstds tfysmdsekq kleekyrqed
      361 qrerelrtml lqqsnv
//
LOCUS       XP_053911981             376 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-sensitive inward rectifier potassium channel 15 isoform X6
            [Cuculus canorus].
ACCESSION   XP_053911981
VERSION     XP_053911981.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056006.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..376
                     /product="ATP-sensitive inward rectifier potassium channel
                     15 isoform X6"
                     /calculated_mol_wt=43068
     Region          31..172
                     /region_name="IRK"
                     /note="Inward rectifier potassium channel transmembrane
                     domain; pfam01007"
                     /db_xref="CDD:460023"
     Region          179..350
                     /region_name="IRK_C"
                     /note="Inward rectifier potassium channel C-terminal
                     domain; pfam17655"
                     /db_xref="CDD:465439"
     CDS             1..376
                     /gene="KCNJ15"
                     /coded_by="XM_054056006.1:371..1501"
                     /db_xref="GeneID:104059225"
ORIGIN      
        1 mettkinmsr vplvnggidt amlkahkprv msknghsnvr idkvdgiyll ylqdlwttvi
       61 dmkwrykltl faatfvmtwf lfgviyyaia flhgdleink ftpkhepcvk nvdsltgafl
      121 fslesqttig ygfrfiteec phaifllvaq lvittlieif itgtflakia rpkkraetik
      181 fshcavitkh ngelclvirv anmrkslliq cqlsgkllqt yetkegeril lnqatvkfnv
      241 dsssespfli lpltfyhild essplrdltp qnlkekdfel vvllnatves tsavcqsrts
      301 yipeeihwgy efvpvvslsp ngkyvadfsq fekirrstds tfysmdsekq kleekyrqed
      361 qrerelrtml lqqsnv
//
LOCUS       XP_053911982             376 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-sensitive inward rectifier potassium channel 15 isoform X6
            [Cuculus canorus].
ACCESSION   XP_053911982
VERSION     XP_053911982.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056007.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..376
                     /product="ATP-sensitive inward rectifier potassium channel
                     15 isoform X6"
                     /calculated_mol_wt=43068
     Region          31..172
                     /region_name="IRK"
                     /note="Inward rectifier potassium channel transmembrane
                     domain; pfam01007"
                     /db_xref="CDD:460023"
     Region          179..350
                     /region_name="IRK_C"
                     /note="Inward rectifier potassium channel C-terminal
                     domain; pfam17655"
                     /db_xref="CDD:465439"
     CDS             1..376
                     /gene="KCNJ15"
                     /coded_by="XM_054056007.1:90..1220"
                     /db_xref="GeneID:104059225"
ORIGIN      
        1 mettkinmsr vplvnggidt amlkahkprv msknghsnvr idkvdgiyll ylqdlwttvi
       61 dmkwrykltl faatfvmtwf lfgviyyaia flhgdleink ftpkhepcvk nvdsltgafl
      121 fslesqttig ygfrfiteec phaifllvaq lvittlieif itgtflakia rpkkraetik
      181 fshcavitkh ngelclvirv anmrkslliq cqlsgkllqt yetkegeril lnqatvkfnv
      241 dsssespfli lpltfyhild essplrdltp qnlkekdfel vvllnatves tsavcqsrts
      301 yipeeihwgy efvpvvslsp ngkyvadfsq fekirrstds tfysmdsekq kleekyrqed
      361 qrerelrtml lqqsnv
//
LOCUS       XP_053911983             376 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-sensitive inward rectifier potassium channel 15 isoform X6
            [Cuculus canorus].
ACCESSION   XP_053911983
VERSION     XP_053911983.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056008.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..376
                     /product="ATP-sensitive inward rectifier potassium channel
                     15 isoform X6"
                     /calculated_mol_wt=43068
     Region          31..172
                     /region_name="IRK"
                     /note="Inward rectifier potassium channel transmembrane
                     domain; pfam01007"
                     /db_xref="CDD:460023"
     Region          179..350
                     /region_name="IRK_C"
                     /note="Inward rectifier potassium channel C-terminal
                     domain; pfam17655"
                     /db_xref="CDD:465439"
     CDS             1..376
                     /gene="KCNJ15"
                     /coded_by="XM_054056008.1:50..1180"
                     /db_xref="GeneID:104059225"
ORIGIN      
        1 mettkinmsr vplvnggidt amlkahkprv msknghsnvr idkvdgiyll ylqdlwttvi
       61 dmkwrykltl faatfvmtwf lfgviyyaia flhgdleink ftpkhepcvk nvdsltgafl
      121 fslesqttig ygfrfiteec phaifllvaq lvittlieif itgtflakia rpkkraetik
      181 fshcavitkh ngelclvirv anmrkslliq cqlsgkllqt yetkegeril lnqatvkfnv
      241 dsssespfli lpltfyhild essplrdltp qnlkekdfel vvllnatves tsavcqsrts
      301 yipeeihwgy efvpvvslsp ngkyvadfsq fekirrstds tfysmdsekq kleekyrqed
      361 qrerelrtml lqqsnv
//
LOCUS       XP_053911984             376 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-sensitive inward rectifier potassium channel 15 isoform X6
            [Cuculus canorus].
ACCESSION   XP_053911984
VERSION     XP_053911984.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056009.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..376
                     /product="ATP-sensitive inward rectifier potassium channel
                     15 isoform X6"
                     /calculated_mol_wt=43068
     Region          31..172
                     /region_name="IRK"
                     /note="Inward rectifier potassium channel transmembrane
                     domain; pfam01007"
                     /db_xref="CDD:460023"
     Region          179..350
                     /region_name="IRK_C"
                     /note="Inward rectifier potassium channel C-terminal
                     domain; pfam17655"
                     /db_xref="CDD:465439"
     CDS             1..376
                     /gene="KCNJ15"
                     /coded_by="XM_054056009.1:128..1258"
                     /db_xref="GeneID:104059225"
ORIGIN      
        1 mettkinmsr vplvnggidt amlkahkprv msknghsnvr idkvdgiyll ylqdlwttvi
       61 dmkwrykltl faatfvmtwf lfgviyyaia flhgdleink ftpkhepcvk nvdsltgafl
      121 fslesqttig ygfrfiteec phaifllvaq lvittlieif itgtflakia rpkkraetik
      181 fshcavitkh ngelclvirv anmrkslliq cqlsgkllqt yetkegeril lnqatvkfnv
      241 dsssespfli lpltfyhild essplrdltp qnlkekdfel vvllnatves tsavcqsrts
      301 yipeeihwgy efvpvvslsp ngkyvadfsq fekirrstds tfysmdsekq kleekyrqed
      361 qrerelrtml lqqsnv
//
LOCUS       XP_053911986             248 aa            linear   VRT 09-MAR-2023
DEFINITION  trypsin I-P1-like [Cuculus canorus].
ACCESSION   XP_053911986
VERSION     XP_053911986.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056011.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..248
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..248
                     /product="trypsin I-P1-like"
                     /calculated_mol_wt=26593
     Region          25..244
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cd00190"
                     /db_xref="CDD:238113"
     Site            25
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(64,108,202)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(196,217,219)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..248
                     /gene="LOC128850910"
                     /coded_by="XM_054056011.1:234..980"
                     /db_xref="GeneID:128850910"
ORIGIN      
        1 mkfflfvtfv gvavafpind dddkivggyt caansvpyqv slnsgyhfcg gslinsqwvl
       61 saahcykyrf rvqlgkhnla ltesteqlis vakvilypgy dsatldndim liklaqpaql
      121 travqtvslp tscvdagttc lisgwgntls dghlypdtlq cleapvlsss ecsnayypme
      181 itnnmicvgf leggkdscqn dsggpvvcng qlqgivswgi gcakkgypgv ytkvcnfvsw
      241 ieetmasn
//
LOCUS       XP_053911987             248 aa            linear   VRT 09-MAR-2023
DEFINITION  trypsin I-P1-like [Cuculus canorus].
ACCESSION   XP_053911987
VERSION     XP_053911987.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056012.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..248
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..248
                     /product="trypsin I-P1-like"
                     /calculated_mol_wt=26615
     Region          25..244
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cd00190"
                     /db_xref="CDD:238113"
     Site            25
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(64,108,202)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(196,217,219)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..248
                     /gene="LOC128850911"
                     /coded_by="XM_054056012.1:44..790"
                     /db_xref="GeneID:128850911"
ORIGIN      
        1 mkfflfvtfv gvavafpind dddkivggyt caansvpyqv slnsgyhfcg gslinsqwvl
       61 saahcykyrf rvqlgkhnla ltesteqlis vakvilypgy raatldndim liklaqpaql
      121 travqtvslp tscvdagttc lisgwgntls dghlypdtlq cleapvlsss ecsnayypme
      181 itnnmicvgf leggkdscqe dsggpvvcng qlqgivswgi gcakkgypgv ytkvcnfvsw
      241 ieetiasn
//
LOCUS       XP_053911988             396 aa            linear   VRT 09-MAR-2023
DEFINITION  centrosomal protein of 41 kDa isoform X1 [Cuculus canorus].
ACCESSION   XP_053911988
VERSION     XP_053911988.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056013.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..396
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..396
                     /product="centrosomal protein of 41 kDa isoform X1"
                     /calculated_mol_wt=42997
     Region          193..278
                     /region_name="Rhodanese"
                     /note="Rhodanese-like domain; pfam00581"
                     /db_xref="CDD:425764"
     Site            249
                     /site_type="active"
                     /note="active site residue [active]"
                     /db_xref="CDD:238089"
     CDS             1..396
                     /gene="CEP41"
                     /coded_by="XM_054056013.1:110..1300"
                     /db_xref="GeneID:104061450"
ORIGIN      
        1 mgaavvaahg ggagsargar sggkmsrrra vgdpeyltrr ipqnpryqhi ktrldtgssl
       61 skymekleei krnyrykkde lfkrlkvttl aqlviqvasl sdetlevtne eihkledges
      121 aapdadaelp agtngkgspd gtpspvlfin dtgagesyrs tlqsvisgvg emdiekdtpk
      181 kvdaqtkemp ypdcpfllld vrdrdaydqc hivgaysypi amlsrtmnpy tnsileykna
      241 hgkiiivydn derlasqaat tmcergfenl fmlsgglkvl aqkfpeglvt gsipvscqva
      301 apagaarrki spkvpparae nkwrysaddl qkikyyleee nissdaassf srassgrdsk
      361 vstvrssssl pstagsagsi tarslsrstl qnrpwk
//
LOCUS       XP_009561692             396 aa            linear   VRT 09-MAR-2023
DEFINITION  centrosomal protein of 41 kDa isoform X1 [Cuculus canorus].
ACCESSION   XP_009561692
VERSION     XP_009561692.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563397.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561692.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..396
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..396
                     /product="centrosomal protein of 41 kDa isoform X1"
                     /calculated_mol_wt=42997
     Region          193..278
                     /region_name="Rhodanese"
                     /note="Rhodanese-like domain; pfam00581"
                     /db_xref="CDD:425764"
     Site            249
                     /site_type="active"
                     /note="active site residue [active]"
                     /db_xref="CDD:238089"
     CDS             1..396
                     /gene="CEP41"
                     /coded_by="XM_009563397.2:113..1303"
                     /db_xref="GeneID:104061450"
ORIGIN      
        1 mgaavvaahg ggagsargar sggkmsrrra vgdpeyltrr ipqnpryqhi ktrldtgssl
       61 skymekleei krnyrykkde lfkrlkvttl aqlviqvasl sdetlevtne eihkledges
      121 aapdadaelp agtngkgspd gtpspvlfin dtgagesyrs tlqsvisgvg emdiekdtpk
      181 kvdaqtkemp ypdcpfllld vrdrdaydqc hivgaysypi amlsrtmnpy tnsileykna
      241 hgkiiivydn derlasqaat tmcergfenl fmlsgglkvl aqkfpeglvt gsipvscqva
      301 apagaarrki spkvpparae nkwrysaddl qkikyyleee nissdaassf srassgrdsk
      361 vstvrssssl pstagsagsi tarslsrstl qnrpwk
//
LOCUS       XP_053911989             337 aa            linear   VRT 09-MAR-2023
DEFINITION  centrosomal protein of 41 kDa isoform X2 [Cuculus canorus].
ACCESSION   XP_053911989
VERSION     XP_053911989.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056014.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..337
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..337
                     /product="centrosomal protein of 41 kDa isoform X2"
                     /calculated_mol_wt=36588
     Region          134..219
                     /region_name="Rhodanese"
                     /note="Rhodanese-like domain; pfam00581"
                     /db_xref="CDD:425764"
     Site            190
                     /site_type="active"
                     /note="active site residue [active]"
                     /db_xref="CDD:238089"
     CDS             1..337
                     /gene="CEP41"
                     /coded_by="XM_054056014.1:107..1120"
                     /db_xref="GeneID:104061450"
ORIGIN      
        1 msenlngpsr tepdyrykkd elfkrlkvtt laqlviqvas lsdetlevtn eeihkledge
       61 saapdadael pagtngkgsp dgtpspvlfi ndtgagesyr stlqsvisgv gemdiekdtp
      121 kkvdaqtkem pypdcpflll dvrdrdaydq chivgaysyp iamlsrtmnp ytnsileykn
      181 ahgkiiivyd nderlasqaa ttmcergfen lfmlsgglkv laqkfpeglv tgsipvscqv
      241 aapagaarrk ispkvppara enkwrysadd lqkikyylee enissdaass fsrassgrds
      301 kvstvrssss lpstagsags itarslsrst lqnrpwk
//
LOCUS       XP_053911991              62 aa            linear   VRT 09-MAR-2023
DEFINITION  overexpressed in colon carcinoma 1 protein [Cuculus canorus].
ACCESSION   XP_053911991
VERSION     XP_053911991.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056016.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..62
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..62
                     /product="overexpressed in colon carcinoma 1 protein"
                     /calculated_mol_wt=6034
     Region          1..61
                     /region_name="OCC1"
                     /note="OCC1 family; pfam15506"
                     /db_xref="CDD:292144"
     CDS             1..62
                     /gene="C1H12orf75"
                     /coded_by="XM_054056016.1:64..252"
                     /db_xref="GeneID:104063475"
ORIGIN      
        1 mgcgnstasg aggrgatgtt kdvaeesvsd edkrrnyggv yvglpsdaaa mvssqtkpap
       61 kd
//
LOCUS       XP_053911992             298 aa            linear   VRT 09-MAR-2023
DEFINITION  regulatory factor X-associated protein, partial [Cuculus canorus].
ACCESSION   XP_053911992
VERSION     XP_053911992.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056017.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 4% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the amino end.
FEATURES             Location/Qualifiers
     source          1..298
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         <1..298
                     /product="regulatory factor X-associated protein"
     Region          168..293
                     /region_name="RFXA_RFXANK_bdg"
                     /note="Regulatory factor X-associated C-terminal binding
                     domain; pfam15289"
                     /db_xref="CDD:434600"
     CDS             1..298
                     /gene="RFXAP"
                     /coded_by="XM_054056017.1:<1..897"
                     /db_xref="GeneID:128850913"
ORIGIN      
        1 srlsplpagp ahprptpdet arelprrvrg gavgrarpga preagtassv sgalraspaa
       61 apsssassss ssppqlallv mqpcggeeaa aagaaggalp gtdpplpppg tgglmvfyel
      121 ggggdgeaea geeteaagge staspeelee eeavassget aagggcksct yqgcnetttq
      181 vvkqrkpwmc krhrnkiykd kykrkksdqa lggggaaaag ggpraedsve gsisvtkqrt
      241 gsigdrparp tlleqvlnkk rlsllrspev vqflqkqqql lnqraleqrq qqfqgtpg
//
LOCUS       XP_053911993             295 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP synthase subunit gamma, mitochondrial isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053911993
VERSION     XP_053911993.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056018.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..295
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..295
                     /product="ATP synthase subunit gamma, mitochondrial
                     isoform X1"
                     /calculated_mol_wt=32544
     Region          23..294
                     /region_name="ATPsyn_F1gamma"
                     /note="ATP synthase, F1 gamma subunit; TIGR01146"
                     /db_xref="CDD:273469"
     Site            order(26,31,37,41,44..45,47..48,51..52,97,99..102,
                     132..133,136..137,140,257,260..261,264,270,273..274,
                     276..277,280..281,284,286..291)
                     /site_type="other"
                     /note="core domain interface [polypeptide binding]"
                     /db_xref="CDD:213394"
     Site            order(62..63,65..66,69,72..73,222,225..226,229)
                     /site_type="other"
                     /note="delta subunit interface [polypeptide binding]"
                     /db_xref="CDD:213394"
     Site            order(135,147..152,225,228..229)
                     /site_type="other"
                     /note="epsilon subunit interface [polypeptide binding]"
                     /db_xref="CDD:213394"
     CDS             1..295
                     /gene="ATP5F1C"
                     /coded_by="XM_054056018.1:78..965"
                     /db_xref="GeneID:104066357"
ORIGIN      
        1 mlargavava lyqpqwgqvr nmatlkditr rlksikniqk itksmkmvsa akyaraerel
       61 kparvygtga lalyekaeik apedkkkhll igvssdrglc gaihtsiakt lkneitnltn
      121 agkevmvvgv gdkirgllqr thgnyflltf kevgrrppsf gdasiiasel lnsgyefdeg
      181 sviynrfrsv isyktdekpi fsletvagae slsiyddvda dvlrnyqeft lanilyyslk
      241 esttseqsar mtamdnaskn asemidkltl tfnrtrqavi tkelieiisg aaald
//
LOCUS       XP_009567243             294 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP synthase subunit gamma, mitochondrial isoform X2 [Cuculus
            canorus].
ACCESSION   XP_009567243
VERSION     XP_009567243.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568948.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567243.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..294
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..294
                     /product="ATP synthase subunit gamma, mitochondrial
                     isoform X2"
                     /calculated_mol_wt=32428
     Region          23..294
                     /region_name="ATPsyn_F1gamma"
                     /note="ATP synthase, F1 gamma subunit; TIGR01146"
                     /db_xref="CDD:273469"
     Site            order(26,31,37,41,44..45,47..48,51..52,97,99..102,
                     132..133,136..137,140,257,260..261,264,270,273..274,
                     276..277,280..281,284,286..291)
                     /site_type="other"
                     /note="core domain interface [polypeptide binding]"
                     /db_xref="CDD:213394"
     Site            order(62..63,65..66,69,72..73,222,225..226,229)
                     /site_type="other"
                     /note="delta subunit interface [polypeptide binding]"
                     /db_xref="CDD:213394"
     Site            order(135,147..152,225,228..229)
                     /site_type="other"
                     /note="epsilon subunit interface [polypeptide binding]"
                     /db_xref="CDD:213394"
     CDS             1..294
                     /gene="ATP5F1C"
                     /coded_by="XM_009568948.2:78..962"
                     /db_xref="GeneID:104066357"
ORIGIN      
        1 mlargavava lyqpqwgqvr nmatlkditr rlksikniqk itksmkmvsa akyaraerel
       61 kparvygtga lalyekaeik apedkkkhll igvssdrglc gaihtsiakt lkneitnltn
      121 agkevmvvgv gdkirgllqr thgnyflltf kevgrrppsf gdasiiasel lnsgyefdeg
      181 sviynrfrsv isyktdekpi fsletvagae slsiyddvda dvlrnyqeft lanilyyslk
      241 esttseqsar mtamdnaskn asemidkltl tfnrtrqavi tkelieiisg aaal
//
LOCUS       XP_053911994             294 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP synthase subunit gamma, mitochondrial isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053911994
VERSION     XP_053911994.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056019.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..294
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..294
                     /product="ATP synthase subunit gamma, mitochondrial
                     isoform X3"
                     /calculated_mol_wt=32428
     Region          23..294
                     /region_name="ATPsyn_F1gamma"
                     /note="ATP synthase, F1 gamma subunit; TIGR01146"
                     /db_xref="CDD:273469"
     Site            order(26,31,37,41,44..45,47..48,51..52,97,99..102,
                     132..133,136..137,140,257,260..261,264,270,273..274,
                     276..277,280..281,284,286..291)
                     /site_type="other"
                     /note="core domain interface [polypeptide binding]"
                     /db_xref="CDD:213394"
     Site            order(62..63,65..66,69,72..73,222,225..226,229)
                     /site_type="other"
                     /note="delta subunit interface [polypeptide binding]"
                     /db_xref="CDD:213394"
     Site            order(135,147..152,225,228..229)
                     /site_type="other"
                     /note="epsilon subunit interface [polypeptide binding]"
                     /db_xref="CDD:213394"
     CDS             1..294
                     /gene="ATP5F1C"
                     /coded_by="XM_054056019.1:78..962"
                     /db_xref="GeneID:104066357"
ORIGIN      
        1 mlargavava lyqpqwgqvr nmatlkditr rlksikniqk itksmkmvsa akyaraerel
       61 kparvygtga lalyekaeik apedkkkhll igvssdrglc gaihtsiakt lkneitnltn
      121 agkevmvvgv gdkirgllqr thgnyflltf kevgrrppsf gdasiiasel lnsgyefdeg
      181 sviynrfrsv isyktdekpi fsletvagae slsiyddvda dvlrnyqeft lanilyyslk
      241 esttseqsar mtamdnaskn asemidkltl tfnrtrqavi tkelieiisg aaal
//
LOCUS       XP_053911995             553 aa            linear   VRT 09-MAR-2023
DEFINITION  T-complex protein 1 subunit theta isoform X1 [Cuculus canorus].
ACCESSION   XP_053911995
VERSION     XP_053911995.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056020.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..553
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..553
                     /product="T-complex protein 1 subunit theta isoform X1"
                     /calculated_mol_wt=60103
     Region          10..539
                     /region_name="chap_CCT_theta"
                     /note="T-complex protein 1, theta subunit; TIGR02346"
                     /db_xref="CDD:274087"
     Site            order(20,24,52..55,57,75,77,81,85,88,382,520..526)
                     /site_type="other"
                     /note="ring oligomerisation interface [polypeptide
                     binding]"
                     /db_xref="CDD:239457"
     Site            order(47..49,99,103,166,394,412,452,497,499)
                     /site_type="other"
                     /note="ATP/Mg binding site [chemical binding]"
                     /db_xref="CDD:239457"
     Site            order(432,450,459,461..462,465)
                     /site_type="active"
                     /note="stacking interactions [active]"
                     /db_xref="CDD:239457"
     CDS             1..553
                     /gene="CCT8"
                     /coded_by="XM_054056020.1:99..1760"
                     /db_xref="GeneID:104064773"
ORIGIN      
        1 malhvpkapg faqmlkegak hysgleeavy rniqackela qttrtaygpn gmnkmvinhl
       61 eklfvtndaa tilrelevqh paakmlvmas hmqeqevgdg tnfvlvfagv llelaedllr
      121 mglsvsevie gyekackkal eilpdlvccs aknlrdteev asllrtsvms kqygnehfla
      181 kliaqacvsi lpdsghfnvd nirvckivga gisassvlhg mvfkketegd vtsvkdakia
      241 vyscpfdgmi tetkgtvlik naeelmnfsk geenlmdlqv kaiadsganv vvtggkvadm
      301 alhyankynl mivrlnskwd lrrlcktvga talprltppt leemghcdsv ylsevgdtqv
      361 vvfkhekedg aistilirgs tdnlmddier avddgvntfk vltrdkrlvp gggateiela
      421 kqitsygetc pgldqyaikk faeafeaipr alaensgvka nevisklyav hqegnknvgf
      481 dieaeaavvk dmleagvldt ylgkswgikl atnaavtvlr vdqiimakta ggpkapkqqg
      541 hwdkddwkde pek
//
LOCUS       XP_053911996             553 aa            linear   VRT 09-MAR-2023
DEFINITION  T-complex protein 1 subunit theta isoform X1 [Cuculus canorus].
ACCESSION   XP_053911996
VERSION     XP_053911996.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056021.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..553
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..553
                     /product="T-complex protein 1 subunit theta isoform X1"
                     /calculated_mol_wt=60103
     Region          10..539
                     /region_name="chap_CCT_theta"
                     /note="T-complex protein 1, theta subunit; TIGR02346"
                     /db_xref="CDD:274087"
     Site            order(20,24,52..55,57,75,77,81,85,88,382,520..526)
                     /site_type="other"
                     /note="ring oligomerisation interface [polypeptide
                     binding]"
                     /db_xref="CDD:239457"
     Site            order(47..49,99,103,166,394,412,452,497,499)
                     /site_type="other"
                     /note="ATP/Mg binding site [chemical binding]"
                     /db_xref="CDD:239457"
     Site            order(432,450,459,461..462,465)
                     /site_type="active"
                     /note="stacking interactions [active]"
                     /db_xref="CDD:239457"
     CDS             1..553
                     /gene="CCT8"
                     /coded_by="XM_054056021.1:99..1760"
                     /db_xref="GeneID:104064773"
ORIGIN      
        1 malhvpkapg faqmlkegak hysgleeavy rniqackela qttrtaygpn gmnkmvinhl
       61 eklfvtndaa tilrelevqh paakmlvmas hmqeqevgdg tnfvlvfagv llelaedllr
      121 mglsvsevie gyekackkal eilpdlvccs aknlrdteev asllrtsvms kqygnehfla
      181 kliaqacvsi lpdsghfnvd nirvckivga gisassvlhg mvfkketegd vtsvkdakia
      241 vyscpfdgmi tetkgtvlik naeelmnfsk geenlmdlqv kaiadsganv vvtggkvadm
      301 alhyankynl mivrlnskwd lrrlcktvga talprltppt leemghcdsv ylsevgdtqv
      361 vvfkhekedg aistilirgs tdnlmddier avddgvntfk vltrdkrlvp gggateiela
      421 kqitsygetc pgldqyaikk faeafeaipr alaensgvka nevisklyav hqegnknvgf
      481 dieaeaavvk dmleagvldt ylgkswgikl atnaavtvlr vdqiimakta ggpkapkqqg
      541 hwdkddwkde pek
//
LOCUS       XP_053911997             548 aa            linear   VRT 09-MAR-2023
DEFINITION  T-complex protein 1 subunit theta isoform X2 [Cuculus canorus].
ACCESSION   XP_053911997
VERSION     XP_053911997.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056022.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..548
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..548
                     /product="T-complex protein 1 subunit theta isoform X2"
                     /calculated_mol_wt=59393
     Region          10..539
                     /region_name="chap_CCT_theta"
                     /note="T-complex protein 1, theta subunit; TIGR02346"
                     /db_xref="CDD:274087"
     Site            order(20,24,52..55,57,75,77,81,85,88,382,520..526)
                     /site_type="other"
                     /note="ring oligomerisation interface [polypeptide
                     binding]"
                     /db_xref="CDD:239457"
     Site            order(47..49,99,103,166,394,412,452,497,499)
                     /site_type="other"
                     /note="ATP/Mg binding site [chemical binding]"
                     /db_xref="CDD:239457"
     Site            order(432,450,459,461..462,465)
                     /site_type="active"
                     /note="stacking interactions [active]"
                     /db_xref="CDD:239457"
     CDS             1..548
                     /gene="CCT8"
                     /coded_by="XM_054056022.1:99..1745"
                     /db_xref="GeneID:104064773"
ORIGIN      
        1 malhvpkapg faqmlkegak hysgleeavy rniqackela qttrtaygpn gmnkmvinhl
       61 eklfvtndaa tilrelevqh paakmlvmas hmqeqevgdg tnfvlvfagv llelaedllr
      121 mglsvsevie gyekackkal eilpdlvccs aknlrdteev asllrtsvms kqygnehfla
      181 kliaqacvsi lpdsghfnvd nirvckivga gisassvlhg mvfkketegd vtsvkdakia
      241 vyscpfdgmi tetkgtvlik naeelmnfsk geenlmdlqv kaiadsganv vvtggkvadm
      301 alhyankynl mivrlnskwd lrrlcktvga talprltppt leemghcdsv ylsevgdtqv
      361 vvfkhekedg aistilirgs tdnlmddier avddgvntfk vltrdkrlvp gggateiela
      421 kqitsygetc pgldqyaikk faeafeaipr alaensgvka nevisklyav hqegnknvgf
      481 dieaeaavvk dmleagvldt ylgkswgikl atnaavtvlr vdqiimakpa ggpkppsgkk
      541 dwdedqnd
//
LOCUS       XP_053911999             146 aa            linear   VRT 09-MAR-2023
DEFINITION  40S ribosomal protein S16 [Cuculus canorus].
ACCESSION   XP_053911999
VERSION     XP_053911999.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056024.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..146
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..146
                     /product="40S ribosomal protein S16"
                     /calculated_mol_wt=16282
     Region          6..146
                     /region_name="PLN00210"
                     /note="40S ribosomal protein S16; Provisional"
                     /db_xref="CDD:177799"
     CDS             1..146
                     /gene="RPS16"
                     /coded_by="XM_054056024.1:110..550"
                     /db_xref="GeneID:104061151"
ORIGIN      
        1 mpakgplqsv qvfgrkktat avahckrgng likvngrple mieprtlqyk llepvlllgk
       61 erfagvdirv rvkggghvaq iyairqaisk alvayyqkyv deaskkeikd iliqydrtll
      121 vadprrcesk kfggpgarar yqksyr
//
LOCUS       XP_053912000             369 aa            linear   VRT 09-MAR-2023
DEFINITION  capZ-interacting protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053912000
VERSION     XP_053912000.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056025.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..369
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..369
                     /product="capZ-interacting protein isoform X1"
                     /calculated_mol_wt=39620
     Region          83..192
                     /region_name="CAP-ZIP_m"
                     /note="WASH complex subunit CAP-Z interacting, central
                     region; pfam15255"
                     /db_xref="CDD:464595"
     CDS             1..369
                     /gene="RCSD1"
                     /coded_by="XM_054056025.1:194..1303"
                     /db_xref="GeneID:104056017"
ORIGIN      
        1 menrpaetns evdksaspsv aqlagkfkeq aanttgkevp phkptrrkpp cslplyshkt
       61 etsdnddqkr spnacpipkv kvksspmiek lqanlafapa allpgaspks pglkalvspf
      121 stppstpssp giqsqpgevn etpvsfdqpp egtqlqfynk vrtrgsikrr ppsrkfrrsl
      181 seygdaedlg vniispenga kedgdevfgp tgkteeaekt gskekkkqmg sdekppsrrg
      241 shrsedeekg gkqaeetspc knnagytkee evchdapked nppqppsgdk ekacqgtpge
      301 qqqstayeqe kgdkekeeae teaevketse stdargisdt eetplapepl qdavgletas
      361 esstsatqd
//
LOCUS       XP_053912001             319 aa            linear   VRT 09-MAR-2023
DEFINITION  capZ-interacting protein isoform X2 [Cuculus canorus].
ACCESSION   XP_053912001
VERSION     XP_053912001.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056026.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..319
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..319
                     /product="capZ-interacting protein isoform X2"
                     /calculated_mol_wt=34162
     Region          40..142
                     /region_name="CAP-ZIP_m"
                     /note="WASH complex subunit CAP-Z interacting, central
                     region; pfam15255"
                     /db_xref="CDD:464595"
     CDS             1..319
                     /gene="RCSD1"
                     /coded_by="XM_054056026.1:1124..2083"
                     /db_xref="GeneID:104056017"
ORIGIN      
        1 mwavtaercg sprgrskgss mwfshvvhag vlhihdadfs lqanlafapa allpgaspks
       61 pglkalvspf stppstpssp giqsqpgevn etpvsfdqpp egtqlqfynk vrtrgsikrr
      121 ppsrkfrrsl seygdaedlg vniispenga kedgdevfgp tgkteeaekt gskekkkqmg
      181 sdekppsrrg shrsedeekg gkqaeetspc knnagytkee evchdapked nppqppsgdk
      241 ekacqgtpge qqqstayeqe kgdkekeeae teaevketse stdargisdt eetplapepl
      301 qdavgletas esstsatqd
//
LOCUS       XP_053912002             345 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor IIIA [Cuculus canorus].
ACCESSION   XP_053912002
VERSION     XP_053912002.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056027.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..345
                     /product="transcription factor IIIA"
                     /calculated_mol_wt=39684
     Region          25..44
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(29,31,33,35..36,39..40,43,59,61,65..66,69..70,73,89,
                     91,93,95..96,99..100,104)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          <46..167
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          52..74
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          82..105
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          117..136
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(121,123,125,127..128,131..132,135,151,153,157..158,
                     161..162,165,205,207,209,211..212,215..216,219)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          144..166
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          200..220
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          229..252
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          260..282
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..345
                     /gene="GTF3A"
                     /coded_by="XM_054056027.1:50..1087"
                     /db_xref="GeneID:104064229"
ORIGIN      
        1 meraggeprg ggsagvarrf icsfpgceat fnkswkldah lcrhtgarpy vcnyegcgkg
       61 ftrdfhrarh llthtgeklf ectadgcnek fgiksnlkkh iqrkhenqqk qyvcnfegcn
      121 qsfkkhqqlr vhqchhnnep pfkcnyegcg kcfsipsllk rhekvhegyv ckkencsytg
      181 ktwtellkhn keshtepivc secyktfkrk dylkqhkkih aakrevylcp regcgrtytt
      241 afnlqshils fhenerpfsc dypgcgrvfa mkqslvrhtv vhdpekkkln lkenhsrpkr
      301 slasrlsgyi ppkkqpekdt vvteskttdk pmeneiptve iltlq
//
LOCUS       XP_009564759             273 aa            linear   VRT 09-MAR-2023
DEFINITION  translation initiation factor IF-3, mitochondrial [Cuculus
            canorus].
ACCESSION   XP_009564759
VERSION     XP_009564759.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566464.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..273
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..273
                     /product="translation initiation factor IF-3,
                     mitochondrial"
                     /calculated_mol_wt=31385
     Region          81..>194
                     /region_name="InfC"
                     /note="Translation initiation factor IF-3 [Translation,
                     ribosomal structure and biogenesis]; COG0290"
                     /db_xref="CDD:440059"
     CDS             1..273
                     /gene="MTIF3"
                     /coded_by="XM_009566464.2:270..1091"
                     /db_xref="GeneID:104064162"
ORIGIN      
        1 mttfcmmkll cqatrnekss trrffgtllt qtpqkrvycp fwmvvpdpgk stvfalaqpf
       61 ctaekshtep kskavfgsvg rripyrilhv inqdgeslgn mhraealrlm dqhdlklvll
      121 renvdppvyr lmtgqqihee qlkraekqka kpkpgivqke lsfssaiakn dletktkqia
      181 qwiekkyhvk vtirqakdsn tdmfmlydei letvsekaty lskpkvtreg vstcilrhms
      241 drelkayqka enqkkntvkk denedlksse lhq
//
LOCUS       XP_053912003             337 aa            linear   VRT 09-MAR-2023
DEFINITION  PI-PLC X domain-containing protein 2 [Cuculus canorus].
ACCESSION   XP_053912003
VERSION     XP_053912003.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056028.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..337
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..337
                     /product="PI-PLC X domain-containing protein 2"
                     /calculated_mol_wt=38469
     Region          34..324
                     /region_name="PI-PLCXD1c"
                     /note="Catalytic domain of phosphatidylinositol-specific
                     phospholipase C, X domain containing 1; cd08616"
                     /db_xref="CDD:176555"
     Site            order(52,111,127,157,208,227,229,309)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:176555"
     Site            order(52,127)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:176555"
     CDS             1..337
                     /gene="PLCXD2"
                     /coded_by="XM_054056028.1:78..1091"
                     /db_xref="GeneID:104056003"
ORIGIN      
        1 mgppggqegg rrrrrrrwge aavaesnadw mgllpaalca yplahlaipg shdsfsywvd
       61 ekspvgpdqa taikrlaris lvkkimkkws vtqnltfkeq leggiryfdl rvsskpgevg
      121 qeiyfihglf gikvwdglke innfleqhpk evvfldfnhf yamdnshhcy linrihsafg
      181 sklcsvecve yvtlqymwek khqvlifyhy plceeysflw pgnkmpapwa nttnvhkllq
      241 flettleers rygtfhvsqa iltprvktia rhlirglknt lvhrnlpmil nwvkaqkpgi
      301 mgvniitsdf velvdfaatv ialndllled dessiks
//
LOCUS       XP_053912004             483 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protease serine 2 [Cuculus canorus].
ACCESSION   XP_053912004
VERSION     XP_053912004.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056029.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..483
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..483
                     /product="transmembrane protease serine 2"
                     /calculated_mol_wt=53267
     Region          102..137
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(107,116,127..128)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(120,123,127,133..134)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            130..134
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          142..238
                     /region_name="SRCR_2"
                     /note="Scavenger receptor cysteine-rich domain; pfam15494"
                     /db_xref="CDD:464747"
     Region          247..478
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cd00190"
                     /db_xref="CDD:238113"
     Site            247
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(287,336,432)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(426,451,453)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..483
                     /gene="TMPRSS2"
                     /coded_by="XM_054056029.1:518..1969"
                     /db_xref="GeneID:104059268"
ORIGIN      
        1 mtsiasappy yenhgfqpen iyaarqpvga npypsfstsv psvpsyvpsv vthqssrpva
       61 rssgttcasn vkkiiiiils illviccaia affiwyfven rclgsliecg ssgvcmppsk
      121 wcdgvshcpk gedetrcvrl fgpdfilqvy spvskswypv cqddwndnyg kiackdmgyn
      181 vdtyyysqgv ttegsfksym klntsagdid lykklyssds casgkvvslr cidcglssrn
      241 lnimsrivgg seavlgqwpw qvslhvqgih vcggsiitrq wivtaahcve grfsdpyswr
      301 vyagilnqne mflrdgyrvq qiishpdydt dskdndialm kletpltftd tirpvclpnp
      361 gmmfqlnqqc wisgwgaeyq ggktsnnlny vmvpliersr cnsvyvyngm ilptmicagy
      421 lgggidscqg dsggplvtnk nsvwwlvgdt swgtgcaspn rpgvygnmtv ftdwiyknmq
      481 anr
//
LOCUS       XP_053912005             531 aa            linear   VRT 09-MAR-2023
DEFINITION  amine oxidase [flavin-containing] B isoform X1 [Cuculus canorus].
ACCESSION   XP_053912005
VERSION     XP_053912005.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056030.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..531
                     /product="amine oxidase [flavin-containing] B isoform X1"
                     /calculated_mol_wt=59884
     Region          26..461
                     /region_name="YobN"
                     /note="Monoamine oxidase [Amino acid transport and
                     metabolism]; COG1231"
                     /db_xref="CDD:440844"
     CDS             1..531
                     /gene="LOC104059284"
                     /coded_by="XM_054056030.1:30..1625"
                     /db_xref="GeneID:104059284"
ORIGIN      
        1 mlpafvsnyl hsisnnfgle eshhvglsaa klltesglnv vlleandrvg grtftvrnkq
       61 vkyvdlggay vgptqnrllr ltkelgiety kvnevehlih hvkgksypfk gpfppmwnll
      121 ayldynnlwr tmdemgkeip seapwrapha eewdkmtmqd fidkicwtna aksfatlfvn
      181 vdvtsephev salwflwyvk qcggttrifs ttnggqerkf vggagqisek mmerlgsrvk
      241 lkkpvvridq sgesvivetl dhelyegkyv isaippalgl kihfnpplps mrnqlinrip
      301 mgsvikcivy yketfwrkkg ycgtmiiede daaigltldd tkpdgsfpai igfilarkcr
      361 rltgltkeer ktrlcelyak vlgseealhp vhyeeknwce eqysggcyta yfppgimtqy
      421 griirqpigr iyfagtetat ewsgymegav qageraarei lfamrkipet eiwkpepesi
      481 dvpalpittt fwernlpsvp gllkligfst fftsvaaagl fvykkgllvr n
//
LOCUS       XP_053912006             521 aa            linear   VRT 09-MAR-2023
DEFINITION  amine oxidase [flavin-containing] B isoform X2 [Cuculus canorus].
ACCESSION   XP_053912006
VERSION     XP_053912006.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056031.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..521
                     /product="amine oxidase [flavin-containing] B isoform X2"
                     /calculated_mol_wt=58505
     Region          14..451
                     /region_name="YobN"
                     /note="Monoamine oxidase [Amino acid transport and
                     metabolism]; COG1231"
                     /db_xref="CDD:440844"
     CDS             1..521
                     /gene="LOC104059284"
                     /coded_by="XM_054056031.1:140..1705"
                     /db_xref="GeneID:104059284"
ORIGIN      
        1 maekcdvvvv gggisglsaa klltesglnv vlleandrvg grtftvrnkq vkyvdlggay
       61 vgptqnrllr ltkelgiety kvnevehlih hvkgksypfk gpfppmwnll ayldynnlwr
      121 tmdemgkeip seapwrapha eewdkmtmqd fidkicwtna aksfatlfvn vdvtsephev
      181 salwflwyvk qcggttrifs ttnggqerkf vggagqisek mmerlgsrvk lkkpvvridq
      241 sgesvivetl dhelyegkyv isaippalgl kihfnpplps mrnqlinrip mgsvikcivy
      301 yketfwrkkg ycgtmiiede daaigltldd tkpdgsfpai igfilarkcr rltgltkeer
      361 ktrlcelyak vlgseealhp vhyeeknwce eqysggcyta yfppgimtqy griirqpigr
      421 iyfagtetat ewsgymegav qageraarei lfamrkipet eiwkpepesi dvpalpittt
      481 fwernlpsvp gllkligfst fftsvaaagl fvykkgllvr n
//
LOCUS       XP_053912007             700 aa            linear   VRT 09-MAR-2023
DEFINITION  SUN domain-containing protein 2 [Cuculus canorus].
ACCESSION   XP_053912007
VERSION     XP_053912007.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056032.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..700
                     /product="SUN domain-containing protein 2"
                     /calculated_mol_wt=77898
     Region          <272..>509
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          388..439
                     /region_name="SUN_cc1"
                     /note="coiled-coil domain 1 of SUN domain-containing
                     proteins; cl41753"
                     /db_xref="CDD:425384"
     Site            order(388,391..392,395,398..399,400,402..403,406..407,
                     409..410,413..414,416..417,420,423..424,427,430..431,
                     434..435,437..439)
                     /site_type="other"
                     /note="trimer interface [polypeptide binding]"
                     /db_xref="CDD:410603"
     Region          468..521
                     /region_name="HTH_SUN2"
                     /note="SUN2 helix-turn-helix domain; pfam18580"
                     /db_xref="CDD:436594"
     Region          564..698
                     /region_name="Sad1_UNC"
                     /note="Sad1 / UNC-like C-terminal; pfam07738"
                     /db_xref="CDD:400199"
     CDS             1..700
                     /gene="SUN2"
                     /coded_by="XM_054056032.1:166..2268"
                     /db_xref="GeneID:104065893"
ORIGIN      
        1 msrrsqrlvt tryypgedda atssssssll gssfkessgr marrksssmk rlspdpstqt
       61 syysesmmse sylggsrgla algssvlddd ldssmywgag refsnrrrrg tedsesrkin
      121 gllesktydt yasssgysse ddyaghldsg qsssssglkt aasrvgsflw qvltfpvwfv
      181 rwllsglasa whrvtgmdlr lgdvplsrcy lwlkrsllll llllvltaaa ygawyfypyg
      241 lstlslpafp whgagklsss gagdltaldk glqgehqlla rfqaleksle alqdkiskge
      301 lwqmaatgaq ppledvlall erlmshrdtg lkehlssdmt rllqgeldal raqvqrdldk
      361 rldkmgkssq emearfleln sqwqssaqeg lrrslrqeae qemavlkrel vhlkseqell
      421 gkhveeilek lkamrtdvea qfpawlsqfl sqsrqdgaag lilqkedlqt elqsleqkil
      481 akvledqall vqdiqagtgv avregvteeq vhhivsqalq rysedrigmv dyalesagas
      541 vintrcsety emrtallslf giplwyhsqs prvilqpdvn pgncwafrgs qgfavirlss
      601 iihptavtle hipkalsphg tissaprdfa vyglkeegee eglllgqfty dhdgdpiqtf
      661 yfkadsmgty qlvelrvlsn wghpeytciy rfrvhgepah
//
LOCUS       XP_053912009             700 aa            linear   VRT 09-MAR-2023
DEFINITION  SUN domain-containing protein 2 [Cuculus canorus].
ACCESSION   XP_053912009
VERSION     XP_053912009.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056034.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..700
                     /product="SUN domain-containing protein 2"
                     /calculated_mol_wt=77898
     Region          <272..>509
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          388..439
                     /region_name="SUN_cc1"
                     /note="coiled-coil domain 1 of SUN domain-containing
                     proteins; cl41753"
                     /db_xref="CDD:425384"
     Site            order(388,391..392,395,398..399,400,402..403,406..407,
                     409..410,413..414,416..417,420,423..424,427,430..431,
                     434..435,437..439)
                     /site_type="other"
                     /note="trimer interface [polypeptide binding]"
                     /db_xref="CDD:410603"
     Region          468..521
                     /region_name="HTH_SUN2"
                     /note="SUN2 helix-turn-helix domain; pfam18580"
                     /db_xref="CDD:436594"
     Region          564..698
                     /region_name="Sad1_UNC"
                     /note="Sad1 / UNC-like C-terminal; pfam07738"
                     /db_xref="CDD:400199"
     CDS             1..700
                     /gene="SUN2"
                     /coded_by="XM_054056034.1:109..2211"
                     /db_xref="GeneID:104065893"
ORIGIN      
        1 msrrsqrlvt tryypgedda atssssssll gssfkessgr marrksssmk rlspdpstqt
       61 syysesmmse sylggsrgla algssvlddd ldssmywgag refsnrrrrg tedsesrkin
      121 gllesktydt yasssgysse ddyaghldsg qsssssglkt aasrvgsflw qvltfpvwfv
      181 rwllsglasa whrvtgmdlr lgdvplsrcy lwlkrsllll llllvltaaa ygawyfypyg
      241 lstlslpafp whgagklsss gagdltaldk glqgehqlla rfqaleksle alqdkiskge
      301 lwqmaatgaq ppledvlall erlmshrdtg lkehlssdmt rllqgeldal raqvqrdldk
      361 rldkmgkssq emearfleln sqwqssaqeg lrrslrqeae qemavlkrel vhlkseqell
      421 gkhveeilek lkamrtdvea qfpawlsqfl sqsrqdgaag lilqkedlqt elqsleqkil
      481 akvledqall vqdiqagtgv avregvteeq vhhivsqalq rysedrigmv dyalesagas
      541 vintrcsety emrtallslf giplwyhsqs prvilqpdvn pgncwafrgs qgfavirlss
      601 iihptavtle hipkalsphg tissaprdfa vyglkeegee eglllgqfty dhdgdpiqtf
      661 yfkadsmgty qlvelrvlsn wghpeytciy rfrvhgepah
//
LOCUS       XP_053912010             265 aa            linear   VRT 09-MAR-2023
DEFINITION  killer cell lectin-like receptor subfamily F member 1 [Cuculus
            canorus].
ACCESSION   XP_053912010
VERSION     XP_053912010.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056035.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..265
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..265
                     /product="killer cell lectin-like receptor subfamily F
                     member 1"
                     /calculated_mol_wt=30245
     Region          140..258
                     /region_name="CLECT_NK_receptors_like"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in natural killer cell receptors (NKRs); cd03593"
                     /db_xref="CDD:153063"
     Site            order(195,224,242,244..245)
                     /site_type="other"
                     /note="ligand binding surface [chemical binding]"
                     /db_xref="CDD:153063"
     CDS             1..265
                     /gene="LOC104054955"
                     /coded_by="XM_054056035.1:144..941"
                     /db_xref="GeneID:104054955"
ORIGIN      
        1 maddityvdv amlprerphv psrtsvpgnm ityaelrvkp kpkgssrsht sasvcrhrys
       61 awfyvalvlg vlvlillgii avlakqflkg rtgktesisq ygpnstdnhi ssektvsvvl
      121 vkwlmeelce dgqgttcelc ppgwqlhrar cyyfseeaes wddsqrncla rksqllvied
      181 eiemefidnk ekdtkyiwig lkiedtrkqr ssvedrrvke nslnidgiet rkncavyrrk
      241 nmiqadncqt lkkwickkna tllvl
//
LOCUS       XP_053912011             234 aa            linear   VRT 09-MAR-2023
DEFINITION  killer cell lectin-like receptor subfamily F member 1 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053912011
VERSION     XP_053912011.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056036.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..234
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..234
                     /product="killer cell lectin-like receptor subfamily F
                     member 1 isoform X1"
                     /calculated_mol_wt=26726
     Region          109..227
                     /region_name="CLECT_NK_receptors_like"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in natural killer cell receptors (NKRs); cd03593"
                     /db_xref="CDD:153063"
     Site            order(166,194,211,213..214)
                     /site_type="other"
                     /note="ligand binding surface [chemical binding]"
                     /db_xref="CDD:153063"
     CDS             1..234
                     /gene="LOC104054956"
                     /coded_by="XM_054056036.1:827..1531"
                     /db_xref="GeneID:104054956"
ORIGIN      
        1 msretqtcvl gsnscciskt llflsglpsn ssgfrcltal mgflnvvflg amitliqqcd
       61 llssdtgkpr dnlsetgtvf eedlhenrll ttlkeslcmh tndsrcelcp tgwklhygrc
      121 yfysetrdtw ensrkycsgk kselliiede aemdflnklk dkdigfvwtg lsfdeeqgrw
      181 vwlndtrhpk hsftikgrkk eekcaayklt emhadnchsl ykwickksav lldi
//
LOCUS       XP_009554326             230 aa            linear   VRT 09-MAR-2023
DEFINITION  killer cell lectin-like receptor subfamily F member 1 isoform X2
            [Cuculus canorus].
ACCESSION   XP_009554326
VERSION     XP_009554326.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556031.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..230
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..230
                     /product="killer cell lectin-like receptor subfamily F
                     member 1 isoform X2"
                     /calculated_mol_wt=26486
     Region          105..223
                     /region_name="CLECT_NK_receptors_like"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in natural killer cell receptors (NKRs); cd03593"
                     /db_xref="CDD:153063"
     Site            order(162,190,207,209..210)
                     /site_type="other"
                     /note="ligand binding surface [chemical binding]"
                     /db_xref="CDD:153063"
     CDS             1..230
                     /gene="LOC104054956"
                     /coded_by="XM_009556031.2:122..814"
                     /db_xref="GeneID:104054956"
ORIGIN      
        1 meneegytel yfkgrkkssd aglpsnssgf rcltalmgfl nvvflgamit liqqcdllss
       61 dtgkprdnls etgtvfeedl henrllttlk eslcmhtnds rcelcptgwk lhygrcyfys
      121 etrdtwensr kycsgkksel liiedeaemd flnklkdkdi gfvwtglsfd eeqgrwvwln
      181 dtrhpkhsft ikgrkkeekc aaykltemha dnchslykwi ckksavlldi
//
LOCUS       XP_053912012             221 aa            linear   VRT 09-MAR-2023
DEFINITION  killer cell lectin-like receptor subfamily F member 1 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053912012
VERSION     XP_053912012.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056037.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..221
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..221
                     /product="killer cell lectin-like receptor subfamily F
                     member 1 isoform X3"
                     /calculated_mol_wt=24999
     Region          109..214
                     /region_name="CLECT_NK_receptors_like"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in natural killer cell receptors (NKRs); cd03593"
                     /db_xref="CDD:153063"
     Site            order(166,181,198,200..201)
                     /site_type="other"
                     /note="ligand binding surface [chemical binding]"
                     /db_xref="CDD:153063"
     CDS             1..221
                     /gene="LOC104054956"
                     /coded_by="XM_054056037.1:827..1492"
                     /db_xref="GeneID:104054956"
ORIGIN      
        1 msretqtcvl gsnscciskt llflsglpsn ssgfrcltal mgflnvvflg amitliqqcd
       61 llssdtgkpr dnlsetgtvf eedlhenrll ttlkeslcmh tndsrcelcp tgwklhygrc
      121 yfysetrdtw ensrkycsgk kselliiede aemdflnklk dkdigfvwtg lsfdeeqgsf
      181 tikgrkkeek caaykltemh adnchslykw ickksavlld i
//
LOCUS       XP_053912013             197 aa            linear   VRT 09-MAR-2023
DEFINITION  killer cell lectin-like receptor subfamily F member 1 isoform X4
            [Cuculus canorus].
ACCESSION   XP_053912013
VERSION     XP_053912013.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056038.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..197
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..197
                     /product="killer cell lectin-like receptor subfamily F
                     member 1 isoform X4"
                     /calculated_mol_wt=22958
     Region          72..190
                     /region_name="CLECT_NK_receptors_like"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in natural killer cell receptors (NKRs); cd03593"
                     /db_xref="CDD:153063"
     Site            order(129,157,174,176..177)
                     /site_type="other"
                     /note="ligand binding surface [chemical binding]"
                     /db_xref="CDD:153063"
     CDS             1..197
                     /gene="LOC104054956"
                     /coded_by="XM_054056038.1:122..715"
                     /db_xref="GeneID:104054956"
ORIGIN      
        1 meneegytel yfkgrkkssd agdllssdtg kprdnlsetg tvfeedlhen rllttlkesl
       61 cmhtndsrce lcptgwklhy grcyfysetr dtwensrkyc sgkksellii edeaemdfln
      121 klkdkdigfv wtglsfdeeq grwvwlndtr hpkhsftikg rkkeekcaay kltemhadnc
      181 hslykwickk savlldi
//
LOCUS       XP_009555446             134 aa            linear   VRT 09-MAR-2023
DEFINITION  SH2 domain-containing protein 1B [Cuculus canorus].
ACCESSION   XP_009555446
VERSION     XP_009555446.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557151.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555446.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..134
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..134
                     /product="SH2 domain-containing protein 1B"
                     /calculated_mol_wt=15576
     Region          1..103
                     /region_name="SH2"
                     /note="Src homology 2 (SH2) domain; cl15255"
                     /db_xref="CDD:472789"
     Site            order(12,31,52,54)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:198173"
     Site            order(53,85)
                     /site_type="other"
                     /note="hydrophobic binding pocket [polypeptide binding]"
                     /db_xref="CDD:198173"
     CDS             1..134
                     /gene="SH2D1B"
                     /coded_by="XM_009557151.2:1..405"
                     /db_xref="GeneID:104055958"
ORIGIN      
        1 melpfshgki tkrtceemls knrmngsyli resesvegal clcvffeelv ytyrifrehq
       61 gyfriqtseg vpqkifrtlk dliynyekpn qglitnlryp vkkpkasqss qrfksgkdgi
      121 ydeiddsdyv dvlp
//
LOCUS       XP_009567545             254 aa            linear   VRT 09-MAR-2023
DEFINITION  fibroblast growth factor 23 [Cuculus canorus].
ACCESSION   XP_009567545
VERSION     XP_009567545.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009569250.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..254
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..254
                     /product="fibroblast growth factor 23"
                     /calculated_mol_wt=28892
     Region          26..173
                     /region_name="beta-trefoil_FGF23"
                     /note="FGF domain, beta-trefoil fold, found in fibroblast
                     growth factor 23 (FGF23) and similar proteins; cd23333"
                     /db_xref="CDD:467019"
     Site            order(26..27,32,40,47,49,51..54,56,70,78..79,81..82,85,92,
                     95,97,121,123,126..129,162..165,170..171)
                     /site_type="other"
                     /note="trimer interface [polypeptide binding]"
                     /db_xref="CDD:467019"
     Site            order(50..53,143..145,157..158)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:467019"
     CDS             1..254
                     /gene="FGF23"
                     /coded_by="XM_009569250.1:1..765"
                     /db_xref="GeneID:104066623"
ORIGIN      
        1 mpqtspyscl gcmllalwsl katlafpnss pllnpswgne drlmhlytdt ernsfhlqin
       61 adgyvdgaph qtiysalmik segagsviit gvksglylcm nmkgdifgsh yfseedcvfh
      121 hrtlengydv yqspkhnflv slgrvkqaff pgmnpppysq flsrrneipl frfntpephr
      181 ntrsadidpm dphqilvpqr kismfgsqlq qqahishmpk epvrinqndv vdpddphamm
      241 harrypsprf yitr
//
LOCUS       XP_009567552             504 aa            linear   VRT 09-MAR-2023
DEFINITION  kelch-like protein 42 [Cuculus canorus].
ACCESSION   XP_009567552
VERSION     XP_009567552.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009569257.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567552.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..504
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..504
                     /product="kelch-like protein 42"
                     /calculated_mol_wt=56978
     Region          20..112
                     /region_name="BTB_POZ"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; cl38908"
                     /db_xref="CDD:453885"
     Region          124..236
                     /region_name="BACK_KLHL42_KLHDC5"
                     /note="BACK (BTB and C-terminal Kelch) domain found in
                     Kelch-like protein 42 (KLHL42); cd18478"
                     /db_xref="CDD:350553"
     Region          234..486
                     /region_name="NanM"
                     /note="N-acetylneuraminic acid mutarotase [Cell
                     wall/membrane/envelope biogenesis]; COG3055"
                     /db_xref="CDD:442289"
     Region          243..286
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          290..330
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          333..371
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..504
                     /gene="KLHL42"
                     /coded_by="XM_009569257.2:205..1719"
                     /db_xref="GeneID:104066630"
ORIGIN      
        1 mslpgrqeee eegdgageev vqirlgdkcy pvckrklieq sdyfralyrs gmreagqgqq
       61 eqllrgglsa lglelvldfi ntsclarleq eeggeedppl leelveaasy lqvtpllrll
      121 lsqvrvgncf elhrlaqvyg lqdlhdacld fmathyhqvl rrpdarphll lphalqqhlk
      181 errmrgtatl vaigdfmgas clglppgchp qveapwsmvr ydeeaqrwlp lannlppdlv
      241 nvrgygsaml dnylfivggy ritsqeisaa hcynpclnew sqlasmnqkr snfkllavng
      301 klyaiggqsl snvecynpen dwwnfvasmp nplaefsace ckgkiyvigg yttrdrnmni
      361 lqycptsdsw tnfelcdvhv rkqqmlsvee tiylvggcih elgpnqkssq nedvltvqsy
      421 niatkewlyl kentsksgln ltctlhndgv yilsrditls tslehrvflk yniftdswes
      481 lrrfpafgqn mlicsmylpd vrev
//
LOCUS       XP_053912014             357 aa            linear   VRT 09-MAR-2023
DEFINITION  protein XRP2 [Cuculus canorus].
ACCESSION   XP_053912014
VERSION     XP_053912014.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056039.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..357
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..357
                     /product="protein XRP2"
                     /calculated_mol_wt=39447
     Region          66..184
                     /region_name="TBCC"
                     /note="Tubulin binding cofactor C; pfam07986"
                     /db_xref="CDD:462331"
     CDS             1..357
                     /gene="RP2"
                     /coded_by="XM_054056039.1:55..1128"
                     /db_xref="GeneID:104063736"
ORIGIN      
        1 mgcffsrrgk aarqpsgdrq gaaagdekap ppqyswdqra kidpkdytfs glkdetvgrl
       61 pgkvagqqfv iqdcencniy ifdhsatiti ddcvncrifl gpikgsvffr dckdckciva
      121 cqqfrtrdcr klevflccat qpiiesstgm kfgcfqyyyp elalqfkdag lsifnntwsn
      181 ihdftpvsge nnwgllpena vvqdyvplps seelkavris teatrsiipi tqgrrqkcsd
      241 esclavffag dystanarkl idemsgkgfq lvqtkeismk aedahrvfkq casefiplld
      301 kgpvvalefs gdgaveacqs tindvfsgtk vfvseskasa sqdvdnffnf admqmgm
//
LOCUS       XP_053912016            1029 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger CCCH domain-containing protein 7B isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912016
VERSION     XP_053912016.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056041.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1029
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1029
                     /product="zinc finger CCCH domain-containing protein 7B
                     isoform X1"
                     /calculated_mol_wt=115842
     Region          2..>186
                     /region_name="3a0801s09"
                     /note="mitochondrial precursor proteins import receptor
                     (72 kDa mitochondrial outermembrane protein)
                     (mitochondrial import receptor for the ADP/ATP carrier)
                     (translocase of outermembrane tom70); TIGR00990"
                     /db_xref="CDD:273380"
     Region          39..64
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(40..41,44..45,47,83,86..87,90..91,93..94,117,
                     120..121,124..125,128)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          69..111
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          116..143
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          916..939
                     /region_name="zf-C2H2_jaz"
                     /note="Zinc-finger double-stranded RNA-binding; pfam12171"
                     /db_xref="CDD:432381"
     Region          916..938
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275371"
     Region          962..985
                     /region_name="zf-CCCH"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     pfam00642"
                     /db_xref="CDD:459885"
     CDS             1..1029
                     /gene="ZC3H7B"
                     /coded_by="XM_054056041.1:360..3449"
                     /db_xref="GeneID:104055538"
ORIGIN      
        1 merqkrkqei ekglqfiqst lplsqedyea flqklvrnlf aegndlfrek dfklslvqyv
       61 eglnvadyaa sdevtipkel lcklhvnraa cyfamglyek sledsekals ldkeniralf
      121 rkarslnelg rhkeayecns rcllslphde svtqlgqela qklglrvrka ykrpqqelet
      181 fsllsngtsv nlsnqttsng lgsiddietd csmdlqclpa pvatsipvse glapfpsdld
      241 akglptslpa asllpspdcv ylpepetsed ftdgdiigee ldslldslae gspyplslvq
      301 gtiptnlpte mpqlipvfpg gtpllppvvt asipvstplp pasfglvmdp tkqlssssvl
      361 dafeappggs ggstldslds ldllpytdsr ldaldsfgts rgsldaldtf aieetnpqep
      421 rhppgsqkps pvvsetlpra daprcsgakv vslggvshpa gskvtehlls qlepvmpnta
      481 llvknplast hafkqachic ypktgpkagd ytyreglehk ckrdillgrl knsedktwkr
      541 irprptktnf vgsyylckdm lnkqdckygd nctfayhqee idvwteerkg tlnrdllfdp
      601 lggikqsslt iakllkehqg iftflceicf dskpriiskg tkdtpsvcsn lsakhsfhdn
      661 kclvhivrsa slkyskirqf qehfqfdvcr hevrygclre dschfahsfi elkvwllqqy
      721 sgmthedivq eskkywqqme ahaskpansm aspraptsst fdlqmkfvcg qcwrngqlve
      781 pdkdlkycsa karhcwtker rvllvmskak kkwvsvrplp sirnfpqqyd lcihaqngrk
      841 cqyvgncsfa hspeerdmwt fmkenkildm qqtydmwlkk hnpgkpgegt pltsregekq
      901 iqmptdyadi mmgyhcwlcg knsnskkqwq qhiqsekhke kvftsdsdss cwsyrfpmge
      961 frlcerfqkn kscpegeecr cahgqdelte wldrrevlkq klakarkdml lcprdddfgk
     1021 ynfllrdgv
//
LOCUS       XP_053912017            1029 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger CCCH domain-containing protein 7B isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912017
VERSION     XP_053912017.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056042.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1029
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1029
                     /product="zinc finger CCCH domain-containing protein 7B
                     isoform X1"
                     /calculated_mol_wt=115842
     Region          2..>186
                     /region_name="3a0801s09"
                     /note="mitochondrial precursor proteins import receptor
                     (72 kDa mitochondrial outermembrane protein)
                     (mitochondrial import receptor for the ADP/ATP carrier)
                     (translocase of outermembrane tom70); TIGR00990"
                     /db_xref="CDD:273380"
     Region          39..64
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(40..41,44..45,47,83,86..87,90..91,93..94,117,
                     120..121,124..125,128)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          69..111
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          116..143
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          916..939
                     /region_name="zf-C2H2_jaz"
                     /note="Zinc-finger double-stranded RNA-binding; pfam12171"
                     /db_xref="CDD:432381"
     Region          916..938
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275371"
     Region          962..985
                     /region_name="zf-CCCH"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     pfam00642"
                     /db_xref="CDD:459885"
     CDS             1..1029
                     /gene="ZC3H7B"
                     /coded_by="XM_054056042.1:144..3233"
                     /db_xref="GeneID:104055538"
ORIGIN      
        1 merqkrkqei ekglqfiqst lplsqedyea flqklvrnlf aegndlfrek dfklslvqyv
       61 eglnvadyaa sdevtipkel lcklhvnraa cyfamglyek sledsekals ldkeniralf
      121 rkarslnelg rhkeayecns rcllslphde svtqlgqela qklglrvrka ykrpqqelet
      181 fsllsngtsv nlsnqttsng lgsiddietd csmdlqclpa pvatsipvse glapfpsdld
      241 akglptslpa asllpspdcv ylpepetsed ftdgdiigee ldslldslae gspyplslvq
      301 gtiptnlpte mpqlipvfpg gtpllppvvt asipvstplp pasfglvmdp tkqlssssvl
      361 dafeappggs ggstldslds ldllpytdsr ldaldsfgts rgsldaldtf aieetnpqep
      421 rhppgsqkps pvvsetlpra daprcsgakv vslggvshpa gskvtehlls qlepvmpnta
      481 llvknplast hafkqachic ypktgpkagd ytyreglehk ckrdillgrl knsedktwkr
      541 irprptktnf vgsyylckdm lnkqdckygd nctfayhqee idvwteerkg tlnrdllfdp
      601 lggikqsslt iakllkehqg iftflceicf dskpriiskg tkdtpsvcsn lsakhsfhdn
      661 kclvhivrsa slkyskirqf qehfqfdvcr hevrygclre dschfahsfi elkvwllqqy
      721 sgmthedivq eskkywqqme ahaskpansm aspraptsst fdlqmkfvcg qcwrngqlve
      781 pdkdlkycsa karhcwtker rvllvmskak kkwvsvrplp sirnfpqqyd lcihaqngrk
      841 cqyvgncsfa hspeerdmwt fmkenkildm qqtydmwlkk hnpgkpgegt pltsregekq
      901 iqmptdyadi mmgyhcwlcg knsnskkqwq qhiqsekhke kvftsdsdss cwsyrfpmge
      961 frlcerfqkn kscpegeecr cahgqdelte wldrrevlkq klakarkdml lcprdddfgk
     1021 ynfllrdgv
//
LOCUS       XP_053912018            1029 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger CCCH domain-containing protein 7B isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912018
VERSION     XP_053912018.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056043.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1029
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1029
                     /product="zinc finger CCCH domain-containing protein 7B
                     isoform X1"
                     /calculated_mol_wt=115842
     Region          2..>186
                     /region_name="3a0801s09"
                     /note="mitochondrial precursor proteins import receptor
                     (72 kDa mitochondrial outermembrane protein)
                     (mitochondrial import receptor for the ADP/ATP carrier)
                     (translocase of outermembrane tom70); TIGR00990"
                     /db_xref="CDD:273380"
     Region          39..64
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(40..41,44..45,47,83,86..87,90..91,93..94,117,
                     120..121,124..125,128)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          69..111
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          116..143
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          916..939
                     /region_name="zf-C2H2_jaz"
                     /note="Zinc-finger double-stranded RNA-binding; pfam12171"
                     /db_xref="CDD:432381"
     Region          916..938
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275371"
     Region          962..985
                     /region_name="zf-CCCH"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     pfam00642"
                     /db_xref="CDD:459885"
     CDS             1..1029
                     /gene="ZC3H7B"
                     /coded_by="XM_054056043.1:28..3117"
                     /db_xref="GeneID:104055538"
ORIGIN      
        1 merqkrkqei ekglqfiqst lplsqedyea flqklvrnlf aegndlfrek dfklslvqyv
       61 eglnvadyaa sdevtipkel lcklhvnraa cyfamglyek sledsekals ldkeniralf
      121 rkarslnelg rhkeayecns rcllslphde svtqlgqela qklglrvrka ykrpqqelet
      181 fsllsngtsv nlsnqttsng lgsiddietd csmdlqclpa pvatsipvse glapfpsdld
      241 akglptslpa asllpspdcv ylpepetsed ftdgdiigee ldslldslae gspyplslvq
      301 gtiptnlpte mpqlipvfpg gtpllppvvt asipvstplp pasfglvmdp tkqlssssvl
      361 dafeappggs ggstldslds ldllpytdsr ldaldsfgts rgsldaldtf aieetnpqep
      421 rhppgsqkps pvvsetlpra daprcsgakv vslggvshpa gskvtehlls qlepvmpnta
      481 llvknplast hafkqachic ypktgpkagd ytyreglehk ckrdillgrl knsedktwkr
      541 irprptktnf vgsyylckdm lnkqdckygd nctfayhqee idvwteerkg tlnrdllfdp
      601 lggikqsslt iakllkehqg iftflceicf dskpriiskg tkdtpsvcsn lsakhsfhdn
      661 kclvhivrsa slkyskirqf qehfqfdvcr hevrygclre dschfahsfi elkvwllqqy
      721 sgmthedivq eskkywqqme ahaskpansm aspraptsst fdlqmkfvcg qcwrngqlve
      781 pdkdlkycsa karhcwtker rvllvmskak kkwvsvrplp sirnfpqqyd lcihaqngrk
      841 cqyvgncsfa hspeerdmwt fmkenkildm qqtydmwlkk hnpgkpgegt pltsregekq
      901 iqmptdyadi mmgyhcwlcg knsnskkqwq qhiqsekhke kvftsdsdss cwsyrfpmge
      961 frlcerfqkn kscpegeecr cahgqdelte wldrrevlkq klakarkdml lcprdddfgk
     1021 ynfllrdgv
//
LOCUS       XP_053912019            1029 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger CCCH domain-containing protein 7B isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912019
VERSION     XP_053912019.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056044.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1029
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1029
                     /product="zinc finger CCCH domain-containing protein 7B
                     isoform X1"
                     /calculated_mol_wt=115842
     Region          2..>186
                     /region_name="3a0801s09"
                     /note="mitochondrial precursor proteins import receptor
                     (72 kDa mitochondrial outermembrane protein)
                     (mitochondrial import receptor for the ADP/ATP carrier)
                     (translocase of outermembrane tom70); TIGR00990"
                     /db_xref="CDD:273380"
     Region          39..64
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(40..41,44..45,47,83,86..87,90..91,93..94,117,
                     120..121,124..125,128)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          69..111
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          116..143
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          916..939
                     /region_name="zf-C2H2_jaz"
                     /note="Zinc-finger double-stranded RNA-binding; pfam12171"
                     /db_xref="CDD:432381"
     Region          916..938
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275371"
     Region          962..985
                     /region_name="zf-CCCH"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     pfam00642"
                     /db_xref="CDD:459885"
     CDS             1..1029
                     /gene="ZC3H7B"
                     /coded_by="XM_054056044.1:28..3117"
                     /db_xref="GeneID:104055538"
ORIGIN      
        1 merqkrkqei ekglqfiqst lplsqedyea flqklvrnlf aegndlfrek dfklslvqyv
       61 eglnvadyaa sdevtipkel lcklhvnraa cyfamglyek sledsekals ldkeniralf
      121 rkarslnelg rhkeayecns rcllslphde svtqlgqela qklglrvrka ykrpqqelet
      181 fsllsngtsv nlsnqttsng lgsiddietd csmdlqclpa pvatsipvse glapfpsdld
      241 akglptslpa asllpspdcv ylpepetsed ftdgdiigee ldslldslae gspyplslvq
      301 gtiptnlpte mpqlipvfpg gtpllppvvt asipvstplp pasfglvmdp tkqlssssvl
      361 dafeappggs ggstldslds ldllpytdsr ldaldsfgts rgsldaldtf aieetnpqep
      421 rhppgsqkps pvvsetlpra daprcsgakv vslggvshpa gskvtehlls qlepvmpnta
      481 llvknplast hafkqachic ypktgpkagd ytyreglehk ckrdillgrl knsedktwkr
      541 irprptktnf vgsyylckdm lnkqdckygd nctfayhqee idvwteerkg tlnrdllfdp
      601 lggikqsslt iakllkehqg iftflceicf dskpriiskg tkdtpsvcsn lsakhsfhdn
      661 kclvhivrsa slkyskirqf qehfqfdvcr hevrygclre dschfahsfi elkvwllqqy
      721 sgmthedivq eskkywqqme ahaskpansm aspraptsst fdlqmkfvcg qcwrngqlve
      781 pdkdlkycsa karhcwtker rvllvmskak kkwvsvrplp sirnfpqqyd lcihaqngrk
      841 cqyvgncsfa hspeerdmwt fmkenkildm qqtydmwlkk hnpgkpgegt pltsregekq
      901 iqmptdyadi mmgyhcwlcg knsnskkqwq qhiqsekhke kvftsdsdss cwsyrfpmge
      961 frlcerfqkn kscpegeecr cahgqdelte wldrrevlkq klakarkdml lcprdddfgk
     1021 ynfllrdgv
//
LOCUS       XP_053912020            1028 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger CCCH domain-containing protein 7B isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912020
VERSION     XP_053912020.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056045.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1028
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1028
                     /product="zinc finger CCCH domain-containing protein 7B
                     isoform X2"
                     /calculated_mol_wt=115714
     Region          2..>162
                     /region_name="3a0801s09"
                     /note="mitochondrial precursor proteins import receptor
                     (72 kDa mitochondrial outermembrane protein)
                     (mitochondrial import receptor for the ADP/ATP carrier)
                     (translocase of outermembrane tom70); TIGR00990"
                     /db_xref="CDD:273380"
     Region          39..64
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(40..41,44..45,47,83,86..87,90..91,93..94,117,
                     120..121,124..125,128)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          69..111
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          116..143
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          915..938
                     /region_name="zf-C2H2_jaz"
                     /note="Zinc-finger double-stranded RNA-binding; pfam12171"
                     /db_xref="CDD:432381"
     Region          915..937
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275371"
     Region          961..984
                     /region_name="zf-CCCH"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     pfam00642"
                     /db_xref="CDD:459885"
     CDS             1..1028
                     /gene="ZC3H7B"
                     /coded_by="XM_054056045.1:359..3445"
                     /db_xref="GeneID:104055538"
ORIGIN      
        1 merqkrkqei ekglqfiqst lplsqedyea flqklvrnlf aegndlfrek dfklslvqyv
       61 eglnvadyaa sdevtipkel lcklhvnraa cyfamglyek sledsekals ldkeniralf
      121 rkarslnelg rhkeayecns rcllslphde svtqlgqela qklglrvrka ykrpqeletf
      181 sllsngtsvn lsnqttsngl gsiddietdc smdlqclpap vatsipvseg lapfpsdlda
      241 kglptslpaa sllpspdcvy lpepetsedf tdgdiigeel dslldslaeg spyplslvqg
      301 tiptnlptem pqlipvfpgg tpllppvvta sipvstplpp asfglvmdpt kqlssssvld
      361 afeappggsg gstldsldsl dllpytdsrl daldsfgtsr gsldaldtfa ieetnpqepr
      421 hppgsqkpsp vvsetlprad aprcsgakvv slggvshpag skvtehllsq lepvmpntal
      481 lvknplasth afkqachicy pktgpkagdy tyreglehkc krdillgrlk nsedktwkri
      541 rprptktnfv gsyylckdml nkqdckygdn ctfayhqeei dvwteerkgt lnrdllfdpl
      601 ggikqsslti akllkehqgi ftflceicfd skpriiskgt kdtpsvcsnl sakhsfhdnk
      661 clvhivrsas lkyskirqfq ehfqfdvcrh evrygclred schfahsfie lkvwllqqys
      721 gmthedivqe skkywqqmea haskpansma spraptsstf dlqmkfvcgq cwrngqlvep
      781 dkdlkycsak arhcwtkerr vllvmskakk kwvsvrplps irnfpqqydl cihaqngrkc
      841 qyvgncsfah speerdmwtf mkenkildmq qtydmwlkkh npgkpgegtp ltsregekqi
      901 qmptdyadim mgyhcwlcgk nsnskkqwqq hiqsekhkek vftsdsdssc wsyrfpmgef
      961 rlcerfqknk scpegeecrc ahgqdeltew ldrrevlkqk lakarkdmll cprdddfgky
     1021 nfllrdgv
//
LOCUS       XP_053912022            1028 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger CCCH domain-containing protein 7B isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053912022
VERSION     XP_053912022.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056047.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1028
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1028
                     /product="zinc finger CCCH domain-containing protein 7B
                     isoform X3"
                     /calculated_mol_wt=115743
     Region          2..>186
                     /region_name="3a0801s09"
                     /note="mitochondrial precursor proteins import receptor
                     (72 kDa mitochondrial outermembrane protein)
                     (mitochondrial import receptor for the ADP/ATP carrier)
                     (translocase of outermembrane tom70); TIGR00990"
                     /db_xref="CDD:273380"
     Region          39..64
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(40..41,44..45,47,83,86..87,90..91,93..94,117,
                     120..121,124..125,128)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          69..111
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          116..143
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          915..938
                     /region_name="zf-C2H2_jaz"
                     /note="Zinc-finger double-stranded RNA-binding; pfam12171"
                     /db_xref="CDD:432381"
     Region          915..937
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275371"
     Region          961..984
                     /region_name="zf-CCCH"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     pfam00642"
                     /db_xref="CDD:459885"
     CDS             1..1028
                     /gene="ZC3H7B"
                     /coded_by="XM_054056047.1:359..3445"
                     /db_xref="GeneID:104055538"
ORIGIN      
        1 merqkrkqei ekglqfiqst lplsqedyea flqklvrnlf aegndlfrek dfklslvqyv
       61 eglnvadyaa sdevtipkel lcklhvnraa cyfamglyek sledsekals ldkeniralf
      121 rkarslnelg rhkeayecns rcllslphde svtqlgqela qklglrvrka ykrpqqelet
      181 fsllsngtsv nlsnqttsng lgsiddietd csmdlqclpa pvatsipvse glapfpsdld
      241 akglptslpa asllpspdcv ylpepetsed ftdgdiigee ldslldslae gspyplslvq
      301 gtiptnlpte mpqlipvfpg gtpllppvvt asipvstplp pasfglvmdp tkqlssssvl
      361 dafeappggs ggstldslds ldllpytdsr ldaldsfgts rgsldaldtf aieetnpqep
      421 rhppgsqkps pvvsetlpra daprcsgakv slggvshpag skvtehllsq lepvmpntal
      481 lvknplasth afkqachicy pktgpkagdy tyreglehkc krdillgrlk nsedktwkri
      541 rprptktnfv gsyylckdml nkqdckygdn ctfayhqeei dvwteerkgt lnrdllfdpl
      601 ggikqsslti akllkehqgi ftflceicfd skpriiskgt kdtpsvcsnl sakhsfhdnk
      661 clvhivrsas lkyskirqfq ehfqfdvcrh evrygclred schfahsfie lkvwllqqys
      721 gmthedivqe skkywqqmea haskpansma spraptsstf dlqmkfvcgq cwrngqlvep
      781 dkdlkycsak arhcwtkerr vllvmskakk kwvsvrplps irnfpqqydl cihaqngrkc
      841 qyvgncsfah speerdmwtf mkenkildmq qtydmwlkkh npgkpgegtp ltsregekqi
      901 qmptdyadim mgyhcwlcgk nsnskkqwqq hiqsekhkek vftsdsdssc wsyrfpmgef
      961 rlcerfqknk scpegeecrc ahgqdeltew ldrrevlkqk lakarkdmll cprdddfgky
     1021 nfllrdgv
//
LOCUS       XP_053912023            1028 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger CCCH domain-containing protein 7B isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053912023
VERSION     XP_053912023.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056048.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1028
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1028
                     /product="zinc finger CCCH domain-containing protein 7B
                     isoform X4"
                     /calculated_mol_wt=115713
     Region          2..>186
                     /region_name="3a0801s09"
                     /note="mitochondrial precursor proteins import receptor
                     (72 kDa mitochondrial outermembrane protein)
                     (mitochondrial import receptor for the ADP/ATP carrier)
                     (translocase of outermembrane tom70); TIGR00990"
                     /db_xref="CDD:273380"
     Region          39..64
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(40..41,44..45,47,83,86..87,90..91,93..94,117,
                     120..121,124..125,128)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          69..111
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          116..143
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          915..938
                     /region_name="zf-C2H2_jaz"
                     /note="Zinc-finger double-stranded RNA-binding; pfam12171"
                     /db_xref="CDD:432381"
     Region          915..937
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275371"
     Region          961..984
                     /region_name="zf-CCCH"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     pfam00642"
                     /db_xref="CDD:459885"
     CDS             1..1028
                     /gene="ZC3H7B"
                     /coded_by="XM_054056048.1:362..3448"
                     /db_xref="GeneID:104055538"
ORIGIN      
        1 merqkrkqei ekglqfiqst lplsqedyea flqklvrnlf aegndlfrek dfklslvqyv
       61 eglnvadyaa sdevtipkel lcklhvnraa cyfamglyek sledsekals ldkeniralf
      121 rkarslnelg rhkeayecns rcllslphde svtqlgqela qklglrvrka ykrpqqelet
      181 fsllsngtsv nlsnqttsng lgsiddietd csmdlqclpa pvatsipvse glapfpsdld
      241 akglptslpa asllpspdcv ylpepetsed ftdgdiigee ldslldslae gspyplslvq
      301 gtiptnlpte mpqlipvfpg gtpllppvvt asipvstplp pasfglvmdp tkqlssssvl
      361 dafeappggs ggstldslds ldllpytdsr ldaldsfgts rgsldaldtf aietnpqepr
      421 hppgsqkpsp vvsetlprad aprcsgakvv slggvshpag skvtehllsq lepvmpntal
      481 lvknplasth afkqachicy pktgpkagdy tyreglehkc krdillgrlk nsedktwkri
      541 rprptktnfv gsyylckdml nkqdckygdn ctfayhqeei dvwteerkgt lnrdllfdpl
      601 ggikqsslti akllkehqgi ftflceicfd skpriiskgt kdtpsvcsnl sakhsfhdnk
      661 clvhivrsas lkyskirqfq ehfqfdvcrh evrygclred schfahsfie lkvwllqqys
      721 gmthedivqe skkywqqmea haskpansma spraptsstf dlqmkfvcgq cwrngqlvep
      781 dkdlkycsak arhcwtkerr vllvmskakk kwvsvrplps irnfpqqydl cihaqngrkc
      841 qyvgncsfah speerdmwtf mkenkildmq qtydmwlkkh npgkpgegtp ltsregekqi
      901 qmptdyadim mgyhcwlcgk nsnskkqwqq hiqsekhkek vftsdsdssc wsyrfpmgef
      961 rlcerfqknk scpegeecrc ahgqdeltew ldrrevlkqk lakarkdmll cprdddfgky
     1021 nfllrdgv
//
LOCUS       XP_053912024            1027 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger CCCH domain-containing protein 7B isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053912024
VERSION     XP_053912024.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056049.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1027
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1027
                     /product="zinc finger CCCH domain-containing protein 7B
                     isoform X5"
                     /calculated_mol_wt=115614
     Region          2..>186
                     /region_name="3a0801s09"
                     /note="mitochondrial precursor proteins import receptor
                     (72 kDa mitochondrial outermembrane protein)
                     (mitochondrial import receptor for the ADP/ATP carrier)
                     (translocase of outermembrane tom70); TIGR00990"
                     /db_xref="CDD:273380"
     Region          39..64
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(40..41,44..45,47,83,86..87,90..91,93..94,117,
                     120..121,124..125,128)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          69..111
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          116..143
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          914..937
                     /region_name="zf-C2H2_jaz"
                     /note="Zinc-finger double-stranded RNA-binding; pfam12171"
                     /db_xref="CDD:432381"
     Region          914..936
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275371"
     Region          960..983
                     /region_name="zf-CCCH"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     pfam00642"
                     /db_xref="CDD:459885"
     CDS             1..1027
                     /gene="ZC3H7B"
                     /coded_by="XM_054056049.1:360..3443"
                     /db_xref="GeneID:104055538"
ORIGIN      
        1 merqkrkqei ekglqfiqst lplsqedyea flqklvrnlf aegndlfrek dfklslvqyv
       61 eglnvadyaa sdevtipkel lcklhvnraa cyfamglyek sledsekals ldkeniralf
      121 rkarslnelg rhkeayecns rcllslphde svtqlgqela qklglrvrka ykrpqqelet
      181 fsllsngtsv nlsnqttsng lgsiddietd csmdlqclpa pvatsipvse glapfpsdld
      241 akglptslpa asllpspdcv ylpepetsed ftdgdiigee ldslldslae gspyplslvq
      301 gtiptnlpte mpqlipvfpg gtpllppvvt asipvstplp pasfglvmdp tkqlssssvl
      361 dafeappggs ggstldslds ldllpytdsr ldaldsfgts rgsldaldtf aietnpqepr
      421 hppgsqkpsp vvsetlprad aprcsgakvs lggvshpags kvtehllsql epvmpntall
      481 vknplastha fkqachicyp ktgpkagdyt yreglehkck rdillgrlkn sedktwkrir
      541 prptktnfvg syylckdmln kqdckygdnc tfayhqeeid vwteerkgtl nrdllfdplg
      601 gikqssltia kllkehqgif tflceicfds kpriiskgtk dtpsvcsnls akhsfhdnkc
      661 lvhivrsasl kyskirqfqe hfqfdvcrhe vrygclreds chfahsfiel kvwllqqysg
      721 mthedivqes kkywqqmeah askpansmas praptsstfd lqmkfvcgqc wrngqlvepd
      781 kdlkycsaka rhcwtkerrv llvmskakkk wvsvrplpsi rnfpqqydlc ihaqngrkcq
      841 yvgncsfahs peerdmwtfm kenkildmqq tydmwlkkhn pgkpgegtpl tsregekqiq
      901 mptdyadimm gyhcwlcgkn snskkqwqqh iqsekhkekv ftsdsdsscw syrfpmgefr
      961 lcerfqknks cpegeecrca hgqdeltewl drrevlkqkl akarkdmllc prdddfgkyn
     1021 fllrdgv
//
LOCUS       XP_053912025            1011 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger CCCH domain-containing protein 7B isoform X6 [Cuculus
            canorus].
ACCESSION   XP_053912025
VERSION     XP_053912025.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056050.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1011
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1011
                     /product="zinc finger CCCH domain-containing protein 7B
                     isoform X6"
                     /calculated_mol_wt=114003
     Region          2..>186
                     /region_name="3a0801s09"
                     /note="mitochondrial precursor proteins import receptor
                     (72 kDa mitochondrial outermembrane protein)
                     (mitochondrial import receptor for the ADP/ATP carrier)
                     (translocase of outermembrane tom70); TIGR00990"
                     /db_xref="CDD:273380"
     Region          39..64
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(40..41,44..45,47,83,86..87,90..91,93..94,117,
                     120..121,124..125,128)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          69..111
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          116..143
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          898..921
                     /region_name="zf-C2H2_jaz"
                     /note="Zinc-finger double-stranded RNA-binding; pfam12171"
                     /db_xref="CDD:432381"
     Region          898..920
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275371"
     Region          944..967
                     /region_name="zf-CCCH"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     pfam00642"
                     /db_xref="CDD:459885"
     CDS             1..1011
                     /gene="ZC3H7B"
                     /coded_by="XM_054056050.1:358..3393"
                     /db_xref="GeneID:104055538"
ORIGIN      
        1 merqkrkqei ekglqfiqst lplsqedyea flqklvrnlf aegndlfrek dfklslvqyv
       61 eglnvadyaa sdevtipkel lcklhvnraa cyfamglyek sledsekals ldkeniralf
      121 rkarslnelg rhkeayecns rcllslphde svtqlgqela qklglrvrka ykrpqqelet
      181 fsllsngtsv nlsnqttsng lgsiddietd csmdlqclpa pvatsipvse glapfpsdld
      241 akglptslpa asllpspdcv ylpepetsed ftdgdiigee ldslldslae gspyplslvq
      301 gtiptnlpte mpqlipvfpg gtpllppvvt asipvstplp pasfglvmdp tkqlssssvl
      361 dafeappggs ggstldslds ldllpytdsr ldaldsfgts rgsldaldtf aieetnpqep
      421 rhppgsqkps pvvslggvsh pagskvtehl lsqlepvmpn tallvknpla sthafkqach
      481 icypktgpka gdytyregle hkckrdillg rlknsedktw krirprptkt nfvgsyylck
      541 dmlnkqdcky gdnctfayhq eeidvwteer kgtlnrdllf dplggikqss ltiakllkeh
      601 qgiftflcei cfdskpriis kgtkdtpsvc snlsakhsfh dnkclvhivr saslkyskir
      661 qfqehfqfdv crhevrygcl redschfahs fielkvwllq qysgmthedi vqeskkywqq
      721 meahaskpan smasprapts stfdlqmkfv cgqcwrngql vepdkdlkyc sakarhcwtk
      781 errvllvmsk akkkwvsvrp lpsirnfpqq ydlcihaqng rkcqyvgncs fahspeerdm
      841 wtfmkenkil dmqqtydmwl kkhnpgkpge gtpltsrege kqiqmptdya dimmgyhcwl
      901 cgknsnskkq wqqhiqsekh kekvftsdsd sscwsyrfpm gefrlcerfq knkscpegee
      961 crcahgqdel tewldrrevl kqklakarkd mllcprdddf gkynfllrdg v
//
LOCUS       XP_053912026            1010 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger CCCH domain-containing protein 7B isoform X7 [Cuculus
            canorus].
ACCESSION   XP_053912026
VERSION     XP_053912026.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056051.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1010
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1010
                     /product="zinc finger CCCH domain-containing protein 7B
                     isoform X7"
                     /calculated_mol_wt=113874
     Region          2..>186
                     /region_name="3a0801s09"
                     /note="mitochondrial precursor proteins import receptor
                     (72 kDa mitochondrial outermembrane protein)
                     (mitochondrial import receptor for the ADP/ATP carrier)
                     (translocase of outermembrane tom70); TIGR00990"
                     /db_xref="CDD:273380"
     Region          39..64
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(40..41,44..45,47,83,86..87,90..91,93..94,117,
                     120..121,124..125,128)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          69..111
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          116..143
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          897..920
                     /region_name="zf-C2H2_jaz"
                     /note="Zinc-finger double-stranded RNA-binding; pfam12171"
                     /db_xref="CDD:432381"
     Region          897..919
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275371"
     Region          943..966
                     /region_name="zf-CCCH"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     pfam00642"
                     /db_xref="CDD:459885"
     CDS             1..1010
                     /gene="ZC3H7B"
                     /coded_by="XM_054056051.1:359..3391"
                     /db_xref="GeneID:104055538"
ORIGIN      
        1 merqkrkqei ekglqfiqst lplsqedyea flqklvrnlf aegndlfrek dfklslvqyv
       61 eglnvadyaa sdevtipkel lcklhvnraa cyfamglyek sledsekals ldkeniralf
      121 rkarslnelg rhkeayecns rcllslphde svtqlgqela qklglrvrka ykrpqqelet
      181 fsllsngtsv nlsnqttsng lgsiddietd csmdlqclpa pvatsipvse glapfpsdld
      241 akglptslpa asllpspdcv ylpepetsed ftdgdiigee ldslldslae gspyplslvq
      301 gtiptnlpte mpqlipvfpg gtpllppvvt asipvstplp pasfglvmdp tkqlssssvl
      361 dafeappggs ggstldslds ldllpytdsr ldaldsfgts rgsldaldtf aietnpqepr
      421 hppgsqkpsp vvslggvshp agskvtehll sqlepvmpnt allvknplas thafkqachi
      481 cypktgpkag dytyregleh kckrdillgr lknsedktwk rirprptktn fvgsyylckd
      541 mlnkqdckyg dnctfayhqe eidvwteerk gtlnrdllfd plggikqssl tiakllkehq
      601 giftflceic fdskpriisk gtkdtpsvcs nlsakhsfhd nkclvhivrs aslkyskirq
      661 fqehfqfdvc rhevrygclr edschfahsf ielkvwllqq ysgmthediv qeskkywqqm
      721 eahaskpans maspraptss tfdlqmkfvc gqcwrngqlv epdkdlkycs akarhcwtke
      781 rrvllvmska kkkwvsvrpl psirnfpqqy dlcihaqngr kcqyvgncsf ahspeerdmw
      841 tfmkenkild mqqtydmwlk khnpgkpgeg tpltsregek qiqmptdyad immgyhcwlc
      901 gknsnskkqw qqhiqsekhk ekvftsdsds scwsyrfpmg efrlcerfqk nkscpegeec
      961 rcahgqdelt ewldrrevlk qklakarkdm llcprdddfg kynfllrdgv
//
LOCUS       XP_053912027            1028 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger CCCH domain-containing protein 7B isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912027
VERSION     XP_053912027.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056052.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1028
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1028
                     /product="zinc finger CCCH domain-containing protein 7B
                     isoform X2"
                     /calculated_mol_wt=115714
     Region          2..>162
                     /region_name="3a0801s09"
                     /note="mitochondrial precursor proteins import receptor
                     (72 kDa mitochondrial outermembrane protein)
                     (mitochondrial import receptor for the ADP/ATP carrier)
                     (translocase of outermembrane tom70); TIGR00990"
                     /db_xref="CDD:273380"
     Region          39..64
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(40..41,44..45,47,83,86..87,90..91,93..94,117,
                     120..121,124..125,128)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          69..111
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          116..143
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          915..938
                     /region_name="zf-C2H2_jaz"
                     /note="Zinc-finger double-stranded RNA-binding; pfam12171"
                     /db_xref="CDD:432381"
     Region          915..937
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275371"
     Region          961..984
                     /region_name="zf-CCCH"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     pfam00642"
                     /db_xref="CDD:459885"
     CDS             1..1028
                     /gene="ZC3H7B"
                     /coded_by="XM_054056052.1:144..3230"
                     /db_xref="GeneID:104055538"
ORIGIN      
        1 merqkrkqei ekglqfiqst lplsqedyea flqklvrnlf aegndlfrek dfklslvqyv
       61 eglnvadyaa sdevtipkel lcklhvnraa cyfamglyek sledsekals ldkeniralf
      121 rkarslnelg rhkeayecns rcllslphde svtqlgqela qklglrvrka ykrpqeletf
      181 sllsngtsvn lsnqttsngl gsiddietdc smdlqclpap vatsipvseg lapfpsdlda
      241 kglptslpaa sllpspdcvy lpepetsedf tdgdiigeel dslldslaeg spyplslvqg
      301 tiptnlptem pqlipvfpgg tpllppvvta sipvstplpp asfglvmdpt kqlssssvld
      361 afeappggsg gstldsldsl dllpytdsrl daldsfgtsr gsldaldtfa ieetnpqepr
      421 hppgsqkpsp vvsetlprad aprcsgakvv slggvshpag skvtehllsq lepvmpntal
      481 lvknplasth afkqachicy pktgpkagdy tyreglehkc krdillgrlk nsedktwkri
      541 rprptktnfv gsyylckdml nkqdckygdn ctfayhqeei dvwteerkgt lnrdllfdpl
      601 ggikqsslti akllkehqgi ftflceicfd skpriiskgt kdtpsvcsnl sakhsfhdnk
      661 clvhivrsas lkyskirqfq ehfqfdvcrh evrygclred schfahsfie lkvwllqqys
      721 gmthedivqe skkywqqmea haskpansma spraptsstf dlqmkfvcgq cwrngqlvep
      781 dkdlkycsak arhcwtkerr vllvmskakk kwvsvrplps irnfpqqydl cihaqngrkc
      841 qyvgncsfah speerdmwtf mkenkildmq qtydmwlkkh npgkpgegtp ltsregekqi
      901 qmptdyadim mgyhcwlcgk nsnskkqwqq hiqsekhkek vftsdsdssc wsyrfpmgef
      961 rlcerfqknk scpegeecrc ahgqdeltew ldrrevlkqk lakarkdmll cprdddfgky
     1021 nfllrdgv
//
LOCUS       XP_053912028            1027 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger CCCH domain-containing protein 7B isoform X8 [Cuculus
            canorus].
ACCESSION   XP_053912028
VERSION     XP_053912028.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056053.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1027
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1027
                     /product="zinc finger CCCH domain-containing protein 7B
                     isoform X8"
                     /calculated_mol_wt=115585
     Region          2..>162
                     /region_name="3a0801s09"
                     /note="mitochondrial precursor proteins import receptor
                     (72 kDa mitochondrial outermembrane protein)
                     (mitochondrial import receptor for the ADP/ATP carrier)
                     (translocase of outermembrane tom70); TIGR00990"
                     /db_xref="CDD:273380"
     Region          39..64
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(40..41,44..45,47,83,86..87,90..91,93..94,117,
                     120..121,124..125,128)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          69..111
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          116..143
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          914..937
                     /region_name="zf-C2H2_jaz"
                     /note="Zinc-finger double-stranded RNA-binding; pfam12171"
                     /db_xref="CDD:432381"
     Region          914..936
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275371"
     Region          960..983
                     /region_name="zf-CCCH"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     pfam00642"
                     /db_xref="CDD:459885"
     CDS             1..1027
                     /gene="ZC3H7B"
                     /coded_by="XM_054056053.1:361..3444"
                     /db_xref="GeneID:104055538"
ORIGIN      
        1 merqkrkqei ekglqfiqst lplsqedyea flqklvrnlf aegndlfrek dfklslvqyv
       61 eglnvadyaa sdevtipkel lcklhvnraa cyfamglyek sledsekals ldkeniralf
      121 rkarslnelg rhkeayecns rcllslphde svtqlgqela qklglrvrka ykrpqeletf
      181 sllsngtsvn lsnqttsngl gsiddietdc smdlqclpap vatsipvseg lapfpsdlda
      241 kglptslpaa sllpspdcvy lpepetsedf tdgdiigeel dslldslaeg spyplslvqg
      301 tiptnlptem pqlipvfpgg tpllppvvta sipvstplpp asfglvmdpt kqlssssvld
      361 afeappggsg gstldsldsl dllpytdsrl daldsfgtsr gsldaldtfa ietnpqeprh
      421 ppgsqkpspv vsetlprada prcsgakvvs lggvshpags kvtehllsql epvmpntall
      481 vknplastha fkqachicyp ktgpkagdyt yreglehkck rdillgrlkn sedktwkrir
      541 prptktnfvg syylckdmln kqdckygdnc tfayhqeeid vwteerkgtl nrdllfdplg
      601 gikqssltia kllkehqgif tflceicfds kpriiskgtk dtpsvcsnls akhsfhdnkc
      661 lvhivrsasl kyskirqfqe hfqfdvcrhe vrygclreds chfahsfiel kvwllqqysg
      721 mthedivqes kkywqqmeah askpansmas praptsstfd lqmkfvcgqc wrngqlvepd
      781 kdlkycsaka rhcwtkerrv llvmskakkk wvsvrplpsi rnfpqqydlc ihaqngrkcq
      841 yvgncsfahs peerdmwtfm kenkildmqq tydmwlkkhn pgkpgegtpl tsregekqiq
      901 mptdyadimm gyhcwlcgkn snskkqwqqh iqsekhkekv ftsdsdsscw syrfpmgefr
      961 lcerfqknks cpegeecrca hgqdeltewl drrevlkqkl akarkdmllc prdddfgkyn
     1021 fllrdgv
//
LOCUS       XP_053912029             764 aa            linear   VRT 09-MAR-2023
DEFINITION  chondroadherin-like protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053912029
VERSION     XP_053912029.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056054.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..764
                     /product="chondroadherin-like protein isoform X1"
                     /calculated_mol_wt=83017
     Region          64..>329
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          82..105
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          106..129
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          130..153
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          154..177
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          178..201
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          202..225
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          226..249
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          250..272
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          273..296
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          319..331
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          327..375
                     /region_name="LRRCT"
                     /note="Leucine rich repeat C-terminal domain; smart00082"
                     /db_xref="CDD:214507"
     Region          397..431
                     /region_name="LRRNT"
                     /note="Leucine rich repeat N-terminal domain; smart00013"
                     /db_xref="CDD:214470"
     Region          412..430
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          427..>676
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          432..452
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          453..476
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          477..500
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          501..524
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          525..548
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          549..572
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          573..596
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          597..621
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          622..646
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          647..669
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          678..724
                     /region_name="LRRCT"
                     /note="Leucine rich repeat C-terminal domain; smart00082"
                     /db_xref="CDD:214507"
     CDS             1..764
                     /gene="CHADL"
                     /coded_by="XM_054056054.1:3580..5874"
                     /db_xref="GeneID:104055499"
ORIGIN      
        1 mgledtfpsf fatsrregtp hfqvpstmkl sqgfllllaa mglgataatr cpapcvcdnl
       61 rahvlclnvs lmaipsaipq ltknldlwgn sftvipaeaf latpylthld lqhckvekle
      121 egafrglgrl vylnlasnsi aflyqesldg lsslqqlile gnrieeiqpg afghlgslti
      181 ldlranalvy lpdmvfqglq alrwlrlshn alhvlgneaf aalptlrrls ldhnelqalp
      241 sealarldgt trldlghnpi tylaeealam aslkhlfldh aalqdvapea faqspqlrtl
      301 dlrknqlqgl pplagaralv tiiltgnpll cscrlrpfha wlararvqae gacaappalh
      361 grpldslrps emmcgrpqpp pgptvppeqp rtagngqcpq gctcssdfrh gscekrnlqe
      421 iprgfpknts llnlgrnafr tvplgafpgl kelvslhlqs cgievlhpga lrgleslvyl
      481 yltdnrlstl aaatfkgapr layldldhna fthlpagifq llpnlislhl qhnairelve
      541 gdlagarglr wlyltgnaie riaptalapa kmleklhleg nrlvevptva lkalsalsel
      601 klsrnpikym gdgtflpvas slqhlyldnm gleqispgaf aglgprirsl ylesnkmssi
      661 pnmnnftgle ilnlrdvpfh cdcqllplrr widklnlrvg atcaspaear glkvklsttf
      721 qtcpgwgrge aegastdktk aaskpskkkr sgkppargfk rnra
//
LOCUS       XP_053912030             737 aa            linear   VRT 09-MAR-2023
DEFINITION  chondroadherin-like protein isoform X2 [Cuculus canorus].
ACCESSION   XP_053912030
VERSION     XP_053912030.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056055.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..737
                     /product="chondroadherin-like protein isoform X2"
                     /calculated_mol_wt=79991
     Region          37..>302
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          55..78
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          79..102
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          103..126
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          127..150
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          151..174
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          175..198
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          199..222
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          223..245
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          246..269
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          292..304
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          300..348
                     /region_name="LRRCT"
                     /note="Leucine rich repeat C-terminal domain; smart00082"
                     /db_xref="CDD:214507"
     Region          370..404
                     /region_name="LRRNT"
                     /note="Leucine rich repeat N-terminal domain; smart00013"
                     /db_xref="CDD:214470"
     Region          400..>649
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          405..425
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          426..449
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          450..473
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          474..497
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          498..521
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          522..545
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          546..569
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          570..594
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          595..619
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          620..642
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          651..697
                     /region_name="LRRCT"
                     /note="Leucine rich repeat C-terminal domain; smart00082"
                     /db_xref="CDD:214507"
     CDS             1..737
                     /gene="CHADL"
                     /coded_by="XM_054056055.1:3667..5880"
                     /db_xref="GeneID:104055499"
ORIGIN      
        1 mklsqgflll laamglgata atrcpapcvc dnlrahvlcl nvslmaipsa ipqltknldl
       61 wgnsftvipa eaflatpylt hldlqhckve kleegafrgl grlvylnlas nsiaflyqes
      121 ldglsslqql ilegnrieei qpgafghlgs ltildlrana lvylpdmvfq glqalrwlrl
      181 shnalhvlgn eafaalptlr rlsldhnelq alpsealarl dgttrldlgh npitylaeea
      241 lamaslkhlf ldhaalqdva peafaqspql rtldlrknql qglpplagar alvtiiltgn
      301 pllcscrlrp fhawlararv qaegacaapp alhgrpldsl rpsemmcgrp qpppgptvpp
      361 eqprtagngq cpqgctcssd frhgscekrn lqeiprgfpk ntsllnlgrn afrtvplgaf
      421 pglkelvslh lqscgievlh pgalrglesl vylyltdnrl stlaaatfkg aprlayldld
      481 hnafthlpag ifqllpnlis lhlqhnaire lvegdlagar glrwlyltgn aieriaptal
      541 apakmleklh legnrlvevp tvalkalsal selklsrnpi kymgdgtflp vasslqhlyl
      601 dnmgleqisp gafaglgpri rslylesnkm ssipnmnnft gleilnlrdv pfhcdcqllp
      661 lrrwidklnl rvgatcaspa earglkvkls ttfqtcpgwg rgeaegastd ktkaaskpsk
      721 kkrsgkppar gfkrnra
//
LOCUS       XP_053912032             571 aa            linear   VRT 09-MAR-2023
DEFINITION  ran GTPase-activating protein 1 [Cuculus canorus].
ACCESSION   XP_053912032
VERSION     XP_053912032.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056057.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..571
                     /product="ran GTPase-activating protein 1"
                     /calculated_mol_wt=62003
     Region          21..347
                     /region_name="LRR_RI"
                     /note="Leucine-rich repeats (LRRs), ribonuclease inhibitor
                     (RI)-like subfamily. LRRs are 20-29 residue sequence
                     motifs present in many proteins that participate in
                     protein-protein interactions and have different functions
                     and cellular locations. LRRs correspond...; cd00116"
                     /db_xref="CDD:238064"
     Site            order(23,25,28,30,51,54,56,59,61,79,82,84,87,89,114,117,
                     119,122,124,144,147,149,152,154,182,185,187,190,192,210,
                     213,215,218,220,238,241,243,246,248,266,269,271,274,276,
                     295,298,300,303,305,323,326,328,331,333)
                     /site_type="active"
                     /note="Leucine-rich repeats [active]"
                     /db_xref="CDD:238064"
     Region          51..81
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Site            order(57..58,121,189,217,273,299,301,327)
                     /site_type="other"
                     /note="Substrate binding site [chemical binding]"
                     /db_xref="CDD:238064"
     Region          82..113
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          114..143
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          144..171
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          182..209
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          210..237
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          238..265
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          266..294
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          396..569
                     /region_name="RanGAP1_C"
                     /note="RanGAP1 C-terminal domain; pfam07834"
                     /db_xref="CDD:462282"
     CDS             1..571
                     /gene="RANGAP1"
                     /coded_by="XM_054056057.1:164..1879"
                     /db_xref="GeneID:104055498"
ORIGIN      
        1 maseditrla eslvktklgg gqlsfkgqsl klntaedaee vikqieefdg lealrlegnt
       61 vgveaakvia kalekkselk rchwsdmftg rlrseippal islgdalita gaqlveldls
      121 dnafgpdgvr gfeallkspa cytlqelkln ncgmgigggr ilaaalkech rkssaqgkpl
      181 alkifvagrn rlendgatal aeafgiigtl eevhmpqngi nhpgitalaq afainpllkv
      241 inlndntfte kgavamaetl kalrqievin fgdclvrskg avaiadavke glhklkelnl
      301 sfceikrdaa ltvaeaiedk aelekldlng nclgeegceq lqeileglnm aavlgslsdd
      361 egeeeddeee eeedededee eqqqelnere qeeqksltpe kiigsqdstp vpsppvdiat
      421 flafpspekl lrlgpkhsvl iaqqtdtsdi eklvttllri ssvfkdeapv ktavyettda
      481 lmrkaftsst fnsdafitsl lihmgllkse ekikavpsly gilmtlnhmv qqdyfpksla
      541 pvlsafvtkp nraldscsfa rhmllqtlhq l
//
LOCUS       XP_053912033             571 aa            linear   VRT 09-MAR-2023
DEFINITION  ran GTPase-activating protein 1 [Cuculus canorus].
ACCESSION   XP_053912033
VERSION     XP_053912033.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056058.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..571
                     /product="ran GTPase-activating protein 1"
                     /calculated_mol_wt=62003
     Region          21..347
                     /region_name="LRR_RI"
                     /note="Leucine-rich repeats (LRRs), ribonuclease inhibitor
                     (RI)-like subfamily. LRRs are 20-29 residue sequence
                     motifs present in many proteins that participate in
                     protein-protein interactions and have different functions
                     and cellular locations. LRRs correspond...; cd00116"
                     /db_xref="CDD:238064"
     Site            order(23,25,28,30,51,54,56,59,61,79,82,84,87,89,114,117,
                     119,122,124,144,147,149,152,154,182,185,187,190,192,210,
                     213,215,218,220,238,241,243,246,248,266,269,271,274,276,
                     295,298,300,303,305,323,326,328,331,333)
                     /site_type="active"
                     /note="Leucine-rich repeats [active]"
                     /db_xref="CDD:238064"
     Region          51..81
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Site            order(57..58,121,189,217,273,299,301,327)
                     /site_type="other"
                     /note="Substrate binding site [chemical binding]"
                     /db_xref="CDD:238064"
     Region          82..113
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          114..143
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          144..171
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          182..209
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          210..237
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          238..265
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          266..294
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          396..569
                     /region_name="RanGAP1_C"
                     /note="RanGAP1 C-terminal domain; pfam07834"
                     /db_xref="CDD:462282"
     CDS             1..571
                     /gene="RANGAP1"
                     /coded_by="XM_054056058.1:206..1921"
                     /db_xref="GeneID:104055498"
ORIGIN      
        1 maseditrla eslvktklgg gqlsfkgqsl klntaedaee vikqieefdg lealrlegnt
       61 vgveaakvia kalekkselk rchwsdmftg rlrseippal islgdalita gaqlveldls
      121 dnafgpdgvr gfeallkspa cytlqelkln ncgmgigggr ilaaalkech rkssaqgkpl
      181 alkifvagrn rlendgatal aeafgiigtl eevhmpqngi nhpgitalaq afainpllkv
      241 inlndntfte kgavamaetl kalrqievin fgdclvrskg avaiadavke glhklkelnl
      301 sfceikrdaa ltvaeaiedk aelekldlng nclgeegceq lqeileglnm aavlgslsdd
      361 egeeeddeee eeedededee eqqqelnere qeeqksltpe kiigsqdstp vpsppvdiat
      421 flafpspekl lrlgpkhsvl iaqqtdtsdi eklvttllri ssvfkdeapv ktavyettda
      481 lmrkaftsst fnsdafitsl lihmgllkse ekikavpsly gilmtlnhmv qqdyfpksla
      541 pvlsafvtkp nraldscsfa rhmllqtlhq l
//
LOCUS       XP_053912034             249 aa            linear   VRT 09-MAR-2023
DEFINITION  CREB/ATF bZIP transcription factor [Cuculus canorus].
ACCESSION   XP_053912034
VERSION     XP_053912034.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056059.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..249
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..249
                     /product="CREB/ATF bZIP transcription factor"
                     /calculated_mol_wt=26861
     Region          <114..136
                     /region_name="bZIP"
                     /note="Basic leucine zipper (bZIP) domain of bZIP
                     transcription factors: a DNA-binding and dimerization
                     domain; cl21462"
                     /db_xref="CDD:473870"
     CDS             1..249
                     /gene="CREBZF"
                     /coded_by="XM_054056059.1:46..795"
                     /db_xref="GeneID:128850916"
ORIGIN      
        1 mrhslaqlla assggaspsg aswplsgags aprgrdggdg dasparakpq qprreeaaae
       61 agvgppeawe qedwfpglel gdlleaarpe lsaeatprlk kkkqkekqqk rrqyvlglen
      121 rlqglaaenr qlrdrnrgls rrlrelrres aylravlanq salgrllgrl aglfpeaggd
      181 sgdhdyalps trprgpqeee waapggiclh verdqvsvel csvcarraaa sfkifsfrcl
      241 pcqaplcrg
//
LOCUS       XP_053912035             249 aa            linear   VRT 09-MAR-2023
DEFINITION  CREB/ATF bZIP transcription factor [Cuculus canorus].
ACCESSION   XP_053912035
VERSION     XP_053912035.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056060.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..249
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..249
                     /product="CREB/ATF bZIP transcription factor"
                     /calculated_mol_wt=26861
     Region          <114..136
                     /region_name="bZIP"
                     /note="Basic leucine zipper (bZIP) domain of bZIP
                     transcription factors: a DNA-binding and dimerization
                     domain; cl21462"
                     /db_xref="CDD:473870"
     CDS             1..249
                     /gene="CREBZF"
                     /coded_by="XM_054056060.1:46..795"
                     /db_xref="GeneID:128850916"
ORIGIN      
        1 mrhslaqlla assggaspsg aswplsgags aprgrdggdg dasparakpq qprreeaaae
       61 agvgppeawe qedwfpglel gdlleaarpe lsaeatprlk kkkqkekqqk rrqyvlglen
      121 rlqglaaenr qlrdrnrgls rrlrelrres aylravlanq salgrllgrl aglfpeaggd
      181 sgdhdyalps trprgpqeee waapggiclh verdqvsvel csvcarraaa sfkifsfrcl
      241 pcqaplcrg
//
LOCUS       XP_053912036             135 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC104062998 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912036
VERSION     XP_053912036.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056061.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..135
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..135
                     /product="uncharacterized protein LOC104062998 isoform X1"
                     /calculated_mol_wt=15536
     Region          <9..48
                     /region_name="TMEM126"
                     /note="Transmembrane protein 126; pfam07114"
                     /db_xref="CDD:462092"
     CDS             1..135
                     /gene="LOC104062998"
                     /coded_by="XM_054056061.1:422..829"
                     /db_xref="GeneID:104062998"
ORIGIN      
        1 mwiltvqysl lcrysssplp gkenlwcswl ttaqpifred hpalcfsttr sstlictekq
       61 qnqtnsamaf rhlghtfitp tlailtepvf hetvncgisr shqtltnryd dphrrqqqhf
      121 lplsvfpfly nkpln
//
LOCUS       XP_053912037             130 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC104062998 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912037
VERSION     XP_053912037.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056062.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..130
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..130
                     /product="uncharacterized protein LOC104062998 isoform X2"
                     /calculated_mol_wt=14866
     Region          <9..48
                     /region_name="TMEM126"
                     /note="Transmembrane protein 126; pfam07114"
                     /db_xref="CDD:462092"
     CDS             1..130
                     /gene="LOC104062998"
                     /coded_by="XM_054056062.1:422..814"
                     /db_xref="GeneID:104062998"
ORIGIN      
        1 mwiltvqysl lcrysssplp gkenlwcswl ttaqpifred hpalcfsttr sstlictekq
       61 qnqtnsamaf rhlghtfitp tlailtepvf hetvncgisr shqtltnrya hsnlwlhcsv
      121 wrgkkqsder
//
LOCUS       XP_053912038             696 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-1 receptor accessory protein-like 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912038
VERSION     XP_053912038.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056063.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..696
                     /product="interleukin-1 receptor accessory protein-like 1
                     isoform X1"
                     /calculated_mol_wt=79766
     Region          32..136
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          33..36
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(34,36..41)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          48..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          86..88
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          95..99
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          101..105
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          125..136
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          148..234
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          160..164
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          178..182
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          199..203
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          213..218
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          241..338
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     Region          405..559
                     /region_name="TIR"
                     /note="TIR domain; pfam01582"
                     /db_xref="CDD:396246"
     CDS             1..696
                     /gene="IL1RAPL1"
                     /coded_by="XM_054056063.1:223..2313"
                     /db_xref="GeneID:104059418"
ORIGIN      
        1 mkapihslil lyatltqslk vvtkrgsadg ctdwsvdykk yqvlvgepvr ikcalfygyi
       61 ranyslaqsa glslmwykss gpgdfeepia fdgtrmskee dsiwfrptvv qdsglyacvi
      121 rnstycmkvs isltvgendt glcynskmky fekaelsksk eiscpeiedf lfpfrepeil
      181 wykecksktw rssivfkkdt lvirevredd ignytcelky gffvvrrtte ltvtapltdk
      241 ppkllhples kltiqetqlg gsanltcraf fgysgdvspl iywmkgekfi edlddsrvwe
      301 sdirvlkehl geqevsisli ldsveeadlg nyscyvengn grrhasillh krelmytvel
      361 agglgailll lvclvtvykc ykieimlfyr nhfgaeeldg dnkdydayls ytkvdpdqwn
      421 qetgeeerfa leilpdmlek hygyklfipd rdliptgtyi edvarcvdqs krliivmtpn
      481 yvvrrgwsif eletrlrnml vtgeikvili ecselrgvmn yqevealkht iklltvikwh
      541 gpkcnklnsk fwkrlqyemp fkriepithe qvldvsehgp fgelqtvsai smaaatstal
      601 atahpdlrst fhntyhsqmr qkhyyrsyey dvpptgtlpl tsignqhtyc nipmtlingq
      661 rpqtktnreq npeeahtnsa ilpllprets issviw
//
LOCUS       XP_053912039             696 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-1 receptor accessory protein-like 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912039
VERSION     XP_053912039.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056064.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..696
                     /product="interleukin-1 receptor accessory protein-like 1
                     isoform X1"
                     /calculated_mol_wt=79766
     Region          32..136
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          33..36
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(34,36..41)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          48..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          86..88
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          95..99
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          101..105
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          114..122
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          125..136
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          148..234
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          160..164
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          178..182
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          199..203
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          213..218
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          226..229
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          241..338
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     Region          405..559
                     /region_name="TIR"
                     /note="TIR domain; pfam01582"
                     /db_xref="CDD:396246"
     CDS             1..696
                     /gene="IL1RAPL1"
                     /coded_by="XM_054056064.1:151..2241"
                     /db_xref="GeneID:104059418"
ORIGIN      
        1 mkapihslil lyatltqslk vvtkrgsadg ctdwsvdykk yqvlvgepvr ikcalfygyi
       61 ranyslaqsa glslmwykss gpgdfeepia fdgtrmskee dsiwfrptvv qdsglyacvi
      121 rnstycmkvs isltvgendt glcynskmky fekaelsksk eiscpeiedf lfpfrepeil
      181 wykecksktw rssivfkkdt lvirevredd ignytcelky gffvvrrtte ltvtapltdk
      241 ppkllhples kltiqetqlg gsanltcraf fgysgdvspl iywmkgekfi edlddsrvwe
      301 sdirvlkehl geqevsisli ldsveeadlg nyscyvengn grrhasillh krelmytvel
      361 agglgailll lvclvtvykc ykieimlfyr nhfgaeeldg dnkdydayls ytkvdpdqwn
      421 qetgeeerfa leilpdmlek hygyklfipd rdliptgtyi edvarcvdqs krliivmtpn
      481 yvvrrgwsif eletrlrnml vtgeikvili ecselrgvmn yqevealkht iklltvikwh
      541 gpkcnklnsk fwkrlqyemp fkriepithe qvldvsehgp fgelqtvsai smaaatstal
      601 atahpdlrst fhntyhsqmr qkhyyrsyey dvpptgtlpl tsignqhtyc nipmtlingq
      661 rpqtktnreq npeeahtnsa ilpllprets issviw
//
LOCUS       XP_053912041             622 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-1 receptor accessory protein-like 1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912041
VERSION     XP_053912041.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056066.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..622
                     /product="interleukin-1 receptor accessory protein-like 1
                     isoform X2"
                     /calculated_mol_wt=71598
     Region          <1..62
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          27..31
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          41..46
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          54..57
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          74..160
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          86..90
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          104..108
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          125..129
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          139..144
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          152..155
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          167..264
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     Region          331..485
                     /region_name="TIR"
                     /note="TIR domain; pfam01582"
                     /db_xref="CDD:396246"
     CDS             1..622
                     /gene="IL1RAPL1"
                     /coded_by="XM_054056066.1:211..2079"
                     /db_xref="GeneID:104059418"
ORIGIN      
        1 mwykssgpgd feepiafdgt rmskeedsiw frptvvqdsg lyacvirnst ycmkvsislt
       61 vgendtglcy nskmkyfeka elskskeisc peiedflfpf repeilwyke cksktwrssi
      121 vfkkdtlvir evreddigny tcelkygffv vrrtteltvt apltdkppkl lhplesklti
      181 qetqlggsan ltcraffgys gdvspliywm kgekfiedld dsrvwesdir vlkehlgeqe
      241 vsislildsv eeadlgnysc yvengngrrh asillhkrel mytvelaggl gaillllvcl
      301 vtvykcykie imlfyrnhfg aeeldgdnkd ydaylsytkv dpdqwnqetg eeerfaleil
      361 pdmlekhygy klfipdrdli ptgtyiedva rcvdqskrli ivmtpnyvvr rgwsifelet
      421 rlrnmlvtge ikviliecse lrgvmnyqev ealkhtikll tvikwhgpkc nklnskfwkr
      481 lqyempfkri epitheqvld vsehgpfgel qtvsaismaa atstalatah pdlrstfhnt
      541 yhsqmrqkhy yrsyeydvpp tgtlpltsig nqhtycnipm tlingqrpqt ktnreqnpee
      601 ahtnsailpl lpretsissv iw
//
LOCUS       XP_053912042            1902 aa            linear   VRT 09-MAR-2023
DEFINITION  A disintegrin and metalloproteinase with thrombospondin motifs 20
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053912042
VERSION     XP_053912042.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056067.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1902
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1902
                     /product="A disintegrin and metalloproteinase with
                     thrombospondin motifs 20 isoform X1"
                     /calculated_mol_wt=213726
     Region          36..173
                     /region_name="Pep_M12B_propep"
                     /note="Reprolysin family propeptide; pfam01562"
                     /db_xref="CDD:460254"
     Region          248..454
                     /region_name="ZnMc_ADAMTS_like"
                     /note="Zinc-dependent metalloprotease, ADAMTS_like
                     subgroup. ADAMs (A Disintegrin And Metalloprotease) are
                     glycoproteins, which play roles in cell signaling, cell
                     fusion, and cell-cell interactions. This particular
                     subfamily represents domain architectures that...;
                     cd04273"
                     /db_xref="CDD:239801"
     Site            order(392..393,396,402)
                     /site_type="active"
                     /db_xref="CDD:239801"
     Region          469..536
                     /region_name="ADAMTS_CR_2"
                     /note="ADAMTS cysteine-rich domain 2; pfam17771"
                     /db_xref="CDD:465496"
     Region          549..601
                     /region_name="TSP1"
                     /note="Thrombospondin type 1 repeats; smart00209"
                     /db_xref="CDD:214559"
     Region          606..710
                     /region_name="ADAMTS_CR_3"
                     /note="ADAMTS cysteine-rich domain; pfam19236"
                     /db_xref="CDD:437068"
     Region          712..829
                     /region_name="ADAMTS_spacer1"
                     /note="ADAM-TS Spacer 1; pfam05986"
                     /db_xref="CDD:461796"
     Region          842..890
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          959..1011
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1014..1066
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1069..1124
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1146..1198
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1201..1253
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1298..1349
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1352..1405
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1411..1464
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1467..1520
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1649..1700
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1704..1901
                     /region_name="GON"
                     /note="GON domain; pfam08685"
                     /db_xref="CDD:462559"
     CDS             1..1902
                     /gene="ADAMTS20"
                     /coded_by="XM_054056067.1:2..5710"
                     /db_xref="GeneID:104062419"
ORIGIN      
        1 mrgaaallcl laaawaghra pltaqessae rlssyeivtp vrvnefgeaf pparhfsrrr
       61 rrslepaasr ahyrlsaygq vfrlnlsada gfvaaryrve hagapreppg pdlrhcfyrg
      121 hvnaqeahra vfsicgglmg tfkthdgeyf leplmkadgg dhedehnkph liyrheelkk
      181 kyqkshkpce vsekdmkstl lhptfsslne dsnvlqksls leytlnnlsi kddgnphsrk
      241 krflsypryv evmvtadtkm vrhhgqnlqh yiltlmsiva aiykdssign linivivkli
      301 vihneqegpa itfnaattlr nfclwqqaqn tlddshpshh dtavlitred icrarekcdt
      361 lglaelgtmc dplrscsise englsaafti ahelghvfnv phddsfkcke agikhqyhvm
      421 aptlnyhtsp wtwskcsqky itefldtgyg eclldkpsgk iydlssqlpg smydvnkqce
      481 lmfgvgsqvc pylkqckrlw ctstegvhkg crtqhmplad gtvcgvgmhc rhgicvsrem
      541 etrpvdgewg pwgpysscsr tcgggiksst rlcnrpeprn ggkycvgrrm kfrscntdsc
      601 pkgkkdfreq qcsefdgkhf ningltsavr wlpkysgism kdrcklfcrv sgttsyyqlk
      661 drvadgtpcg petndlcvqg lcrqagcdhv lnskarrdkc gicggdnssc ktltgtfnsa
      721 rygynvvvni prgatnidiq qhsysgkped dnylalsdih gnfilngnfv vsmskreini
      781 qgaifeysgs nstierinst drveeeltlq vlcvgnlysp dvrysfnipi edrsdlftwn
      841 pygpwqdcsr mcqgvrrrrm icirksdhvi vsdqrcelip avpdvfekcn tecelrwhnf
      901 gksdctskcg pgyrsieihc mkysiskgls vpvddkycad qqkpptrepc hgdcmstswh
      961 ytewsecsrs cergvrtrea fcmnslgrhl pdrecqelpr vvtqscnefl cpswsvsews
     1021 ecpvtcgkgm khrqvwchln deqlrddfcn pddrpesiip celhecaswq vgpwgsctvt
     1081 cgrgyqmrav kcvtgtyrvi ldddrecnaa trprdnqece lpscpentkl wttllplvqv
     1141 gkvtqwrygs wtpcsascgk gdraryvscr dayggiadds fcahlprpae isscfspcge
     1201 wqvgnwspct vtcdsgivtr qvicinyhqq inenycdpeg rpskeqecnm ppcppvyrdi
     1261 lkihdqpshf peigyvpihh pqdninqrnr psvggyqwrt gpwgacsstc aggfhrrvvv
     1321 cqdeegrsas ycdeatkppe sthcdsgpcp rwnygnwgec tqtcgagikt rlvicqlptg
     1381 qilgdqncei ldkppnmaqc nvhscpgevs whrgpwkscs vscgkglkfr dvrcfnsfqa
     1441 eieegncrhl kkprtykicr agrcpawkas rwkecsvscg vgveqrdvyc elkglgqvte
     1501 amcnpgtqpa skrhcwlpac rqyqwlegew edclasyrrk evhrkvkcvd enqlqvddif
     1561 cdpatkplst kkcritpsky vvltgdlsqc sdscgfhyqq ritycvgihs lqnqyahglr
     1621 tvayqecpvg pspynyncnl kgcsqaaswr vgkwtkcsvs cgvgvkertv ecmtenglss
     1681 nlclphlkpd arkicreeec eilttckdiq ikkgirkdge yllnikgril kiycsdmhle
     1741 npkeyltllk geadnfsevy gfrlqnpyec pfngsrkqdc acrndylaag ftvfskirfd
     1801 vasmqikttd flfaqtilgr avpfatagdc ysaarcpqgq fsinlagtgl rlsskvrwia
     1861 qgnyatadih kshdgtkiyg rcggfcgkci pstitglqlq iq
//
LOCUS       XP_053912043            1894 aa            linear   VRT 09-MAR-2023
DEFINITION  A disintegrin and metalloproteinase with thrombospondin motifs 20
            isoform X2 [Cuculus canorus].
ACCESSION   XP_053912043
VERSION     XP_053912043.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056068.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1894
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1894
                     /product="A disintegrin and metalloproteinase with
                     thrombospondin motifs 20 isoform X2"
                     /calculated_mol_wt=212829
     Region          36..173
                     /region_name="Pep_M12B_propep"
                     /note="Reprolysin family propeptide; pfam01562"
                     /db_xref="CDD:460254"
     Region          248..454
                     /region_name="ZnMc_ADAMTS_like"
                     /note="Zinc-dependent metalloprotease, ADAMTS_like
                     subgroup. ADAMs (A Disintegrin And Metalloprotease) are
                     glycoproteins, which play roles in cell signaling, cell
                     fusion, and cell-cell interactions. This particular
                     subfamily represents domain architectures that...;
                     cd04273"
                     /db_xref="CDD:239801"
     Site            order(392..393,396,402)
                     /site_type="active"
                     /db_xref="CDD:239801"
     Region          469..536
                     /region_name="ADAMTS_CR_2"
                     /note="ADAMTS cysteine-rich domain 2; pfam17771"
                     /db_xref="CDD:465496"
     Region          549..601
                     /region_name="TSP1"
                     /note="Thrombospondin type 1 repeats; smart00209"
                     /db_xref="CDD:214559"
     Region          606..710
                     /region_name="ADAMTS_CR_3"
                     /note="ADAMTS cysteine-rich domain; pfam19236"
                     /db_xref="CDD:437068"
     Region          715..821
                     /region_name="ADAMTS_spacer1"
                     /note="ADAM-TS Spacer 1; pfam05986"
                     /db_xref="CDD:461796"
     Region          834..882
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          951..1003
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1006..1058
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1061..1116
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1138..1190
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1193..1245
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1290..1341
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1344..1397
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1403..1456
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1459..1512
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1641..1692
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1696..1893
                     /region_name="GON"
                     /note="GON domain; pfam08685"
                     /db_xref="CDD:462559"
     CDS             1..1894
                     /gene="ADAMTS20"
                     /coded_by="XM_054056068.1:2..5686"
                     /db_xref="GeneID:104062419"
ORIGIN      
        1 mrgaaallcl laaawaghra pltaqessae rlssyeivtp vrvnefgeaf pparhfsrrr
       61 rrslepaasr ahyrlsaygq vfrlnlsada gfvaaryrve hagapreppg pdlrhcfyrg
      121 hvnaqeahra vfsicgglmg tfkthdgeyf leplmkadgg dhedehnkph liyrheelkk
      181 kyqkshkpce vsekdmkstl lhptfsslne dsnvlqksls leytlnnlsi kddgnphsrk
      241 krflsypryv evmvtadtkm vrhhgqnlqh yiltlmsiva aiykdssign linivivkli
      301 vihneqegpa itfnaattlr nfclwqqaqn tlddshpshh dtavlitred icrarekcdt
      361 lglaelgtmc dplrscsise englsaafti ahelghvfnv phddsfkcke agikhqyhvm
      421 aptlnyhtsp wtwskcsqky itefldtgyg eclldkpsgk iydlssqlpg smydvnkqce
      481 lmfgvgsqvc pylkqckrlw ctstegvhkg crtqhmplad gtvcgvgmhc rhgicvsrem
      541 etrpvdgewg pwgpysscsr tcgggiksst rlcnrpeprn ggkycvgrrm kfrscntdsc
      601 pkgkkdfreq qcsefdgkhf ningltsavr wlpkysgism kdrcklfcrv sgttsyyqlk
      661 drvadgtpcg petndlcvqg lcrqagcdhv lnskarrdkc gicggdnssc ktltgynvvv
      721 niprgatnid iqqhsysgkp eddnylalsd ihgnfilngn fvvsmskrei niqgaifeys
      781 gsnstierin stdrveeelt lqvlcvgnly spdvrysfni piedrsdlft wnpygpwqdc
      841 srmcqgvrrr rmicirksdh vivsdqrcel ipavpdvfek cntecelrwh nfgksdctsk
      901 cgpgyrsiei hcmkysiskg lsvpvddkyc adqqkpptre pchgdcmsts whytewsecs
      961 rscergvrtr eafcmnslgr hlpdrecqel prvvtqscne flcpswsvse wsecpvtcgk
     1021 gmkhrqvwch lndeqlrddf cnpddrpesi ipcelhecas wqvgpwgsct vtcgrgyqmr
     1081 avkcvtgtyr vildddrecn aatrprdnqe celpscpent klwttllplv qvgkvtqwry
     1141 gswtpcsasc gkgdraryvs crdayggiad dsfcahlprp aeisscfspc gewqvgnwsp
     1201 ctvtcdsgiv trqvicinyh qqinenycdp egrpskeqec nmppcppvyr dilkihdqps
     1261 hfpeigyvpi hhpqdninqr nrpsvggyqw rtgpwgacss tcaggfhrrv vvcqdeegrs
     1321 asycdeatkp pesthcdsgp cprwnygnwg ectqtcgagi ktrlvicqlp tgqilgdqnc
     1381 eildkppnma qcnvhscpge vswhrgpwks csvscgkglk frdvrcfnsf qaeieegncr
     1441 hlkkprtyki cragrcpawk asrwkecsvs cgvgveqrdv ycelkglgqv teamcnpgtq
     1501 paskrhcwlp acrqyqwleg ewedclasyr rkevhrkvkc vdenqlqvdd ifcdpatkpl
     1561 stkkcritps kyvvltgdls qcsdscgfhy qqritycvgi hslqnqyahg lrtvayqecp
     1621 vgpspynync nlkgcsqaas wrvgkwtkcs vscgvgvker tvecmtengl ssnlclphlk
     1681 pdarkicree eceilttckd iqikkgirkd geyllnikgr ilkiycsdmh lenpkeyltl
     1741 lkgeadnfse vygfrlqnpy ecpfngsrkq dcacrndyla agftvfskir fdvasmqikt
     1801 tdflfaqtil gravpfatag dcysaarcpq gqfsinlagt glrlsskvrw iaqgnyatad
     1861 ihkshdgtki ygrcggfcgk cipstitglq lqiq
//
LOCUS       XP_053912044            1889 aa            linear   VRT 09-MAR-2023
DEFINITION  A disintegrin and metalloproteinase with thrombospondin motifs 20
            isoform X3 [Cuculus canorus].
ACCESSION   XP_053912044
VERSION     XP_053912044.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056069.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1889
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1889
                     /product="A disintegrin and metalloproteinase with
                     thrombospondin motifs 20 isoform X3"
                     /calculated_mol_wt=212328
     Region          36..173
                     /region_name="Pep_M12B_propep"
                     /note="Reprolysin family propeptide; pfam01562"
                     /db_xref="CDD:460254"
     Region          248..454
                     /region_name="ZnMc_ADAMTS_like"
                     /note="Zinc-dependent metalloprotease, ADAMTS_like
                     subgroup. ADAMs (A Disintegrin And Metalloprotease) are
                     glycoproteins, which play roles in cell signaling, cell
                     fusion, and cell-cell interactions. This particular
                     subfamily represents domain architectures that...;
                     cd04273"
                     /db_xref="CDD:239801"
     Site            order(392..393,396,402)
                     /site_type="active"
                     /db_xref="CDD:239801"
     Region          469..536
                     /region_name="ADAMTS_CR_2"
                     /note="ADAMTS cysteine-rich domain 2; pfam17771"
                     /db_xref="CDD:465496"
     Region          549..601
                     /region_name="TSP1"
                     /note="Thrombospondin type 1 repeats; smart00209"
                     /db_xref="CDD:214559"
     Region          606..710
                     /region_name="ADAMTS_CR_3"
                     /note="ADAMTS cysteine-rich domain; pfam19236"
                     /db_xref="CDD:437068"
     Region          711..816
                     /region_name="ADAMTS_spacer1"
                     /note="ADAM-TS Spacer 1; pfam05986"
                     /db_xref="CDD:461796"
     Region          829..877
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          946..998
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1001..1053
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1056..1111
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1133..1185
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1188..1240
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1285..1336
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1339..1392
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1398..1451
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1454..1507
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1636..1687
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1691..1888
                     /region_name="GON"
                     /note="GON domain; pfam08685"
                     /db_xref="CDD:462559"
     CDS             1..1889
                     /gene="ADAMTS20"
                     /coded_by="XM_054056069.1:2..5671"
                     /db_xref="GeneID:104062419"
ORIGIN      
        1 mrgaaallcl laaawaghra pltaqessae rlssyeivtp vrvnefgeaf pparhfsrrr
       61 rrslepaasr ahyrlsaygq vfrlnlsada gfvaaryrve hagapreppg pdlrhcfyrg
      121 hvnaqeahra vfsicgglmg tfkthdgeyf leplmkadgg dhedehnkph liyrheelkk
      181 kyqkshkpce vsekdmkstl lhptfsslne dsnvlqksls leytlnnlsi kddgnphsrk
      241 krflsypryv evmvtadtkm vrhhgqnlqh yiltlmsiva aiykdssign linivivkli
      301 vihneqegpa itfnaattlr nfclwqqaqn tlddshpshh dtavlitred icrarekcdt
      361 lglaelgtmc dplrscsise englsaafti ahelghvfnv phddsfkcke agikhqyhvm
      421 aptlnyhtsp wtwskcsqky itefldtgyg eclldkpsgk iydlssqlpg smydvnkqce
      481 lmfgvgsqvc pylkqckrlw ctstegvhkg crtqhmplad gtvcgvgmhc rhgicvsrem
      541 etrpvdgewg pwgpysscsr tcgggiksst rlcnrpeprn ggkycvgrrm kfrscntdsc
      601 pkgkkdfreq qcsefdgkhf ningltsavr wlpkysgism kdrcklfcrv sgttsyyqlk
      661 drvadgtpcg petndlcvqg lcrqagcdhv lnskarrdkc gicggdnssc ynvvvniprg
      721 atnidiqqhs ysgkpeddny lalsdihgnf ilngnfvvsm skreiniqga ifeysgsnst
      781 ierinstdrv eeeltlqvlc vgnlyspdvr ysfnipiedr sdlftwnpyg pwqdcsrmcq
      841 gvrrrrmici rksdhvivsd qrcelipavp dvfekcntec elrwhnfgks dctskcgpgy
      901 rsieihcmky siskglsvpv ddkycadqqk pptrepchgd cmstswhyte wsecsrscer
      961 gvrtreafcm nslgrhlpdr ecqelprvvt qscneflcps wsvsewsecp vtcgkgmkhr
     1021 qvwchlndeq lrddfcnpdd rpesiipcel hecaswqvgp wgsctvtcgr gyqmravkcv
     1081 tgtyrvildd drecnaatrp rdnqecelps cpentklwtt llplvqvgkv tqwrygswtp
     1141 csascgkgdr aryvscrday ggiaddsfca hlprpaeiss cfspcgewqv gnwspctvtc
     1201 dsgivtrqvi cinyhqqine nycdpegrps keqecnmppc ppvyrdilki hdqpshfpei
     1261 gyvpihhpqd ninqrnrpsv ggyqwrtgpw gacsstcagg fhrrvvvcqd eegrsasycd
     1321 eatkppesth cdsgpcprwn ygnwgectqt cgagiktrlv icqlptgqil gdqnceildk
     1381 ppnmaqcnvh scpgevswhr gpwkscsvsc gkglkfrdvr cfnsfqaeie egncrhlkkp
     1441 rtykicragr cpawkasrwk ecsvscgvgv eqrdvycelk glgqvteamc npgtqpaskr
     1501 hcwlpacrqy qwlegewedc lasyrrkevh rkvkcvdenq lqvddifcdp atkplstkkc
     1561 ritpskyvvl tgdlsqcsds cgfhyqqrit ycvgihslqn qyahglrtva yqecpvgpsp
     1621 ynyncnlkgc sqaaswrvgk wtkcsvscgv gvkertvecm tenglssnlc lphlkpdark
     1681 icreeeceil ttckdiqikk girkdgeyll nikgrilkiy csdmhlenpk eyltllkgea
     1741 dnfsevygfr lqnpyecpfn gsrkqdcacr ndylaagftv fskirfdvas mqikttdflf
     1801 aqtilgravp fatagdcysa arcpqgqfsi nlagtglrls skvrwiaqgn yatadihksh
     1861 dgtkiygrcg gfcgkcipst itglqlqiq
//
LOCUS       XP_053912045            1880 aa            linear   VRT 09-MAR-2023
DEFINITION  A disintegrin and metalloproteinase with thrombospondin motifs 20
            isoform X4 [Cuculus canorus].
ACCESSION   XP_053912045
VERSION     XP_053912045.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056070.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1880
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1880
                     /product="A disintegrin and metalloproteinase with
                     thrombospondin motifs 20 isoform X4"
                     /calculated_mol_wt=211760
     Region          36..173
                     /region_name="Pep_M12B_propep"
                     /note="Reprolysin family propeptide; pfam01562"
                     /db_xref="CDD:460254"
     Region          248..454
                     /region_name="ZnMc_ADAMTS_like"
                     /note="Zinc-dependent metalloprotease, ADAMTS_like
                     subgroup. ADAMs (A Disintegrin And Metalloprotease) are
                     glycoproteins, which play roles in cell signaling, cell
                     fusion, and cell-cell interactions. This particular
                     subfamily represents domain architectures that...;
                     cd04273"
                     /db_xref="CDD:239801"
     Site            order(392..393,396,402)
                     /site_type="active"
                     /db_xref="CDD:239801"
     Region          469..536
                     /region_name="ADAMTS_CR_2"
                     /note="ADAMTS cysteine-rich domain 2; pfam17771"
                     /db_xref="CDD:465496"
     Region          549..601
                     /region_name="TSP1"
                     /note="Thrombospondin type 1 repeats; smart00209"
                     /db_xref="CDD:214559"
     Region          606..710
                     /region_name="ADAMTS_CR_3"
                     /note="ADAMTS cysteine-rich domain; pfam19236"
                     /db_xref="CDD:437068"
     Region          712..829
                     /region_name="ADAMTS_spacer1"
                     /note="ADAM-TS Spacer 1; pfam05986"
                     /db_xref="CDD:461796"
     Region          842..890
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          959..1011
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1014..1066
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1069..1124
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1146..1198
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1201..1253
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1298..1349
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1352..1405
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1411..1464
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1467..1520
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1649..1700
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1704..>1838
                     /region_name="GON"
                     /note="GON domain; pfam08685"
                     /db_xref="CDD:462559"
     CDS             1..1880
                     /gene="ADAMTS20"
                     /coded_by="XM_054056070.1:2..5644"
                     /db_xref="GeneID:104062419"
ORIGIN      
        1 mrgaaallcl laaawaghra pltaqessae rlssyeivtp vrvnefgeaf pparhfsrrr
       61 rrslepaasr ahyrlsaygq vfrlnlsada gfvaaryrve hagapreppg pdlrhcfyrg
      121 hvnaqeahra vfsicgglmg tfkthdgeyf leplmkadgg dhedehnkph liyrheelkk
      181 kyqkshkpce vsekdmkstl lhptfsslne dsnvlqksls leytlnnlsi kddgnphsrk
      241 krflsypryv evmvtadtkm vrhhgqnlqh yiltlmsiva aiykdssign linivivkli
      301 vihneqegpa itfnaattlr nfclwqqaqn tlddshpshh dtavlitred icrarekcdt
      361 lglaelgtmc dplrscsise englsaafti ahelghvfnv phddsfkcke agikhqyhvm
      421 aptlnyhtsp wtwskcsqky itefldtgyg eclldkpsgk iydlssqlpg smydvnkqce
      481 lmfgvgsqvc pylkqckrlw ctstegvhkg crtqhmplad gtvcgvgmhc rhgicvsrem
      541 etrpvdgewg pwgpysscsr tcgggiksst rlcnrpeprn ggkycvgrrm kfrscntdsc
      601 pkgkkdfreq qcsefdgkhf ningltsavr wlpkysgism kdrcklfcrv sgttsyyqlk
      661 drvadgtpcg petndlcvqg lcrqagcdhv lnskarrdkc gicggdnssc ktltgtfnsa
      721 rygynvvvni prgatnidiq qhsysgkped dnylalsdih gnfilngnfv vsmskreini
      781 qgaifeysgs nstierinst drveeeltlq vlcvgnlysp dvrysfnipi edrsdlftwn
      841 pygpwqdcsr mcqgvrrrrm icirksdhvi vsdqrcelip avpdvfekcn tecelrwhnf
      901 gksdctskcg pgyrsieihc mkysiskgls vpvddkycad qqkpptrepc hgdcmstswh
      961 ytewsecsrs cergvrtrea fcmnslgrhl pdrecqelpr vvtqscnefl cpswsvsews
     1021 ecpvtcgkgm khrqvwchln deqlrddfcn pddrpesiip celhecaswq vgpwgsctvt
     1081 cgrgyqmrav kcvtgtyrvi ldddrecnaa trprdnqece lpscpentkl wttllplvqv
     1141 gkvtqwrygs wtpcsascgk gdraryvscr dayggiadds fcahlprpae isscfspcge
     1201 wqvgnwspct vtcdsgivtr qvicinyhqq inenycdpeg rpskeqecnm ppcppvyrdi
     1261 lkihdqpshf peigyvpihh pqdninqrnr psvggyqwrt gpwgacsstc aggfhrrvvv
     1321 cqdeegrsas ycdeatkppe sthcdsgpcp rwnygnwgec tqtcgagikt rlvicqlptg
     1381 qilgdqncei ldkppnmaqc nvhscpgevs whrgpwkscs vscgkglkfr dvrcfnsfqa
     1441 eieegncrhl kkprtykicr agrcpawkas rwkecsvscg vgveqrdvyc elkglgqvte
     1501 amcnpgtqpa skrhcwlpac rqyqwlegew edclasyrrk evhrkvkcvd enqlqvddif
     1561 cdpatkplst kkcritpsky vvltgdlsqc sdscgfhyqq ritycvgihs lqnqyahglr
     1621 tvayqecpvg pspynyncnl kgcsqaaswr vgkwtkcsvs cgvgvkertv ecmtenglss
     1681 nlclphlkpd arkicreeec eilttckdiq ikkgirkdge yllnikgril kiycsdmhle
     1741 npkeyltllk geadnfsevy gfrlqnpyec pfngsrkqdc acrndylaag ftvfskirfd
     1801 vasmqikttd flfaqtilgr avpfatagdc ysaarcpqtl qtnatdqlmh kcyfllqnna
     1861 fiylpwvskk rvqcsvtnpg
//
LOCUS       XP_053912046            1874 aa            linear   VRT 09-MAR-2023
DEFINITION  A disintegrin and metalloproteinase with thrombospondin motifs 20
            isoform X5 [Cuculus canorus].
ACCESSION   XP_053912046
VERSION     XP_053912046.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056071.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1874
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1874
                     /product="A disintegrin and metalloproteinase with
                     thrombospondin motifs 20 isoform X5"
                     /calculated_mol_wt=210666
     Region          36..173
                     /region_name="Pep_M12B_propep"
                     /note="Reprolysin family propeptide; pfam01562"
                     /db_xref="CDD:460254"
     Region          248..426
                     /region_name="ZnMc_ADAMTS_like"
                     /note="Zinc-dependent metalloprotease, ADAMTS_like
                     subgroup. ADAMs (A Disintegrin And Metalloprotease) are
                     glycoproteins, which play roles in cell signaling, cell
                     fusion, and cell-cell interactions. This particular
                     subfamily represents domain architectures that...;
                     cd04273"
                     /db_xref="CDD:239801"
     Site            order(364..365,368,374)
                     /site_type="active"
                     /db_xref="CDD:239801"
     Region          441..508
                     /region_name="ADAMTS_CR_2"
                     /note="ADAMTS cysteine-rich domain 2; pfam17771"
                     /db_xref="CDD:465496"
     Region          521..573
                     /region_name="TSP1"
                     /note="Thrombospondin type 1 repeats; smart00209"
                     /db_xref="CDD:214559"
     Region          578..682
                     /region_name="ADAMTS_CR_3"
                     /note="ADAMTS cysteine-rich domain; pfam19236"
                     /db_xref="CDD:437068"
     Region          684..801
                     /region_name="ADAMTS_spacer1"
                     /note="ADAM-TS Spacer 1; pfam05986"
                     /db_xref="CDD:461796"
     Region          814..862
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          931..983
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          986..1038
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1041..1096
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1118..1170
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1173..1225
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1270..1321
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1324..1377
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1383..1436
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1439..1492
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1621..1672
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1676..1873
                     /region_name="GON"
                     /note="GON domain; pfam08685"
                     /db_xref="CDD:462559"
     CDS             1..1874
                     /gene="ADAMTS20"
                     /coded_by="XM_054056071.1:2..5626"
                     /db_xref="GeneID:104062419"
ORIGIN      
        1 mrgaaallcl laaawaghra pltaqessae rlssyeivtp vrvnefgeaf pparhfsrrr
       61 rrslepaasr ahyrlsaygq vfrlnlsada gfvaaryrve hagapreppg pdlrhcfyrg
      121 hvnaqeahra vfsicgglmg tfkthdgeyf leplmkadgg dhedehnkph liyrheelkk
      181 kyqkshkpce vsekdmkstl lhptfsslne dsnvlqksls leytlnnlsi kddgnphsrk
      241 krflsypryv evmvtadtkm vrhhgqnlqh yiltlmsieg paitfnaatt lrnfclwqqa
      301 qntlddshps hhdtavlitr edicrarekc dtlglaelgt mcdplrscsi seenglsaaf
      361 tiahelghvf nvphddsfkc keagikhqyh vmaptlnyht spwtwskcsq kyitefldtg
      421 ygeclldkps gkiydlssql pgsmydvnkq celmfgvgsq vcpylkqckr lwctstegvh
      481 kgcrtqhmpl adgtvcgvgm hcrhgicvsr emetrpvdge wgpwgpyssc srtcgggiks
      541 strlcnrpep rnggkycvgr rmkfrscntd scpkgkkdfr eqqcsefdgk hfningltsa
      601 vrwlpkysgi smkdrcklfc rvsgttsyyq lkdrvadgtp cgpetndlcv qglcrqagcd
      661 hvlnskarrd kcgicggdns scktltgtfn sarygynvvv niprgatnid iqqhsysgkp
      721 eddnylalsd ihgnfilngn fvvsmskrei niqgaifeys gsnstierin stdrveeelt
      781 lqvlcvgnly spdvrysfni piedrsdlft wnpygpwqdc srmcqgvrrr rmicirksdh
      841 vivsdqrcel ipavpdvfek cntecelrwh nfgksdctsk cgpgyrsiei hcmkysiskg
      901 lsvpvddkyc adqqkpptre pchgdcmsts whytewsecs rscergvrtr eafcmnslgr
      961 hlpdrecqel prvvtqscne flcpswsvse wsecpvtcgk gmkhrqvwch lndeqlrddf
     1021 cnpddrpesi ipcelhecas wqvgpwgsct vtcgrgyqmr avkcvtgtyr vildddrecn
     1081 aatrprdnqe celpscpent klwttllplv qvgkvtqwry gswtpcsasc gkgdraryvs
     1141 crdayggiad dsfcahlprp aeisscfspc gewqvgnwsp ctvtcdsgiv trqvicinyh
     1201 qqinenycdp egrpskeqec nmppcppvyr dilkihdqps hfpeigyvpi hhpqdninqr
     1261 nrpsvggyqw rtgpwgacss tcaggfhrrv vvcqdeegrs asycdeatkp pesthcdsgp
     1321 cprwnygnwg ectqtcgagi ktrlvicqlp tgqilgdqnc eildkppnma qcnvhscpge
     1381 vswhrgpwks csvscgkglk frdvrcfnsf qaeieegncr hlkkprtyki cragrcpawk
     1441 asrwkecsvs cgvgveqrdv ycelkglgqv teamcnpgtq paskrhcwlp acrqyqwleg
     1501 ewedclasyr rkevhrkvkc vdenqlqvdd ifcdpatkpl stkkcritps kyvvltgdls
     1561 qcsdscgfhy qqritycvgi hslqnqyahg lrtvayqecp vgpspynync nlkgcsqaas
     1621 wrvgkwtkcs vscgvgvker tvecmtengl ssnlclphlk pdarkicree eceilttckd
     1681 iqikkgirkd geyllnikgr ilkiycsdmh lenpkeyltl lkgeadnfse vygfrlqnpy
     1741 ecpfngsrkq dcacrndyla agftvfskir fdvasmqikt tdflfaqtil gravpfatag
     1801 dcysaarcpq gqfsinlagt glrlsskvrw iaqgnyatad ihkshdgtki ygrcggfcgk
     1861 cipstitglq lqiq
//
LOCUS       XP_053912047            1837 aa            linear   VRT 09-MAR-2023
DEFINITION  A disintegrin and metalloproteinase with thrombospondin motifs 20
            isoform X6 [Cuculus canorus].
ACCESSION   XP_053912047
VERSION     XP_053912047.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056072.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1837
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1837
                     /product="A disintegrin and metalloproteinase with
                     thrombospondin motifs 20 isoform X6"
                     /calculated_mol_wt=207185
     Region          36..173
                     /region_name="Pep_M12B_propep"
                     /note="Reprolysin family propeptide; pfam01562"
                     /db_xref="CDD:460254"
     Region          248..454
                     /region_name="ZnMc_ADAMTS_like"
                     /note="Zinc-dependent metalloprotease, ADAMTS_like
                     subgroup. ADAMs (A Disintegrin And Metalloprotease) are
                     glycoproteins, which play roles in cell signaling, cell
                     fusion, and cell-cell interactions. This particular
                     subfamily represents domain architectures that...;
                     cd04273"
                     /db_xref="CDD:239801"
     Site            order(392..393,396,402)
                     /site_type="active"
                     /db_xref="CDD:239801"
     Region          469..536
                     /region_name="ADAMTS_CR_2"
                     /note="ADAMTS cysteine-rich domain 2; pfam17771"
                     /db_xref="CDD:465496"
     Region          549..601
                     /region_name="TSP1"
                     /note="Thrombospondin type 1 repeats; smart00209"
                     /db_xref="CDD:214559"
     Region          606..710
                     /region_name="ADAMTS_CR_3"
                     /note="ADAMTS cysteine-rich domain; pfam19236"
                     /db_xref="CDD:437068"
     Region          712..829
                     /region_name="ADAMTS_spacer1"
                     /note="ADAM-TS Spacer 1; pfam05986"
                     /db_xref="CDD:461796"
     Region          842..890
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          959..1011
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1014..1066
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1069..1124
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1146..1198
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1201..1253
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1298..1349
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1352..1405
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1411..1464
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1467..1520
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1649..1700
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1704..>1806
                     /region_name="GON"
                     /note="GON domain; pfam08685"
                     /db_xref="CDD:462559"
     CDS             1..1837
                     /gene="ADAMTS20"
                     /coded_by="XM_054056072.1:2..5515"
                     /db_xref="GeneID:104062419"
ORIGIN      
        1 mrgaaallcl laaawaghra pltaqessae rlssyeivtp vrvnefgeaf pparhfsrrr
       61 rrslepaasr ahyrlsaygq vfrlnlsada gfvaaryrve hagapreppg pdlrhcfyrg
      121 hvnaqeahra vfsicgglmg tfkthdgeyf leplmkadgg dhedehnkph liyrheelkk
      181 kyqkshkpce vsekdmkstl lhptfsslne dsnvlqksls leytlnnlsi kddgnphsrk
      241 krflsypryv evmvtadtkm vrhhgqnlqh yiltlmsiva aiykdssign linivivkli
      301 vihneqegpa itfnaattlr nfclwqqaqn tlddshpshh dtavlitred icrarekcdt
      361 lglaelgtmc dplrscsise englsaafti ahelghvfnv phddsfkcke agikhqyhvm
      421 aptlnyhtsp wtwskcsqky itefldtgyg eclldkpsgk iydlssqlpg smydvnkqce
      481 lmfgvgsqvc pylkqckrlw ctstegvhkg crtqhmplad gtvcgvgmhc rhgicvsrem
      541 etrpvdgewg pwgpysscsr tcgggiksst rlcnrpeprn ggkycvgrrm kfrscntdsc
      601 pkgkkdfreq qcsefdgkhf ningltsavr wlpkysgism kdrcklfcrv sgttsyyqlk
      661 drvadgtpcg petndlcvqg lcrqagcdhv lnskarrdkc gicggdnssc ktltgtfnsa
      721 rygynvvvni prgatnidiq qhsysgkped dnylalsdih gnfilngnfv vsmskreini
      781 qgaifeysgs nstierinst drveeeltlq vlcvgnlysp dvrysfnipi edrsdlftwn
      841 pygpwqdcsr mcqgvrrrrm icirksdhvi vsdqrcelip avpdvfekcn tecelrwhnf
      901 gksdctskcg pgyrsieihc mkysiskgls vpvddkycad qqkpptrepc hgdcmstswh
      961 ytewsecsrs cergvrtrea fcmnslgrhl pdrecqelpr vvtqscnefl cpswsvsews
     1021 ecpvtcgkgm khrqvwchln deqlrddfcn pddrpesiip celhecaswq vgpwgsctvt
     1081 cgrgyqmrav kcvtgtyrvi ldddrecnaa trprdnqece lpscpentkl wttllplvqv
     1141 gkvtqwrygs wtpcsascgk gdraryvscr dayggiadds fcahlprpae isscfspcge
     1201 wqvgnwspct vtcdsgivtr qvicinyhqq inenycdpeg rpskeqecnm ppcppvyrdi
     1261 lkihdqpshf peigyvpihh pqdninqrnr psvggyqwrt gpwgacsstc aggfhrrvvv
     1321 cqdeegrsas ycdeatkppe sthcdsgpcp rwnygnwgec tqtcgagikt rlvicqlptg
     1381 qilgdqncei ldkppnmaqc nvhscpgevs whrgpwkscs vscgkglkfr dvrcfnsfqa
     1441 eieegncrhl kkprtykicr agrcpawkas rwkecsvscg vgveqrdvyc elkglgqvte
     1501 amcnpgtqpa skrhcwlpac rqyqwlegew edclasyrrk evhrkvkcvd enqlqvddif
     1561 cdpatkplst kkcritpsky vvltgdlsqc sdscgfhyqq ritycvgihs lqnqyahglr
     1621 tvayqecpvg pspynyncnl kgcsqaaswr vgkwtkcsvs cgvgvkertv ecmtenglss
     1681 nlclphlkpd arkicreeec eilttckdiq ikkgirkdge yllnikgril kiycsdmhle
     1741 npkeyltllk geadnfsevy gfrlqnpyec pfngsrkqdc acrndylaag ftvfskirfd
     1801 vasmqiknyt wesssicysw rllqccqmst dsadkcy
//
LOCUS       XP_053912048            1835 aa            linear   VRT 09-MAR-2023
DEFINITION  A disintegrin and metalloproteinase with thrombospondin motifs 20
            isoform X7 [Cuculus canorus].
ACCESSION   XP_053912048
VERSION     XP_053912048.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056073.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1835
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1835
                     /product="A disintegrin and metalloproteinase with
                     thrombospondin motifs 20 isoform X7"
                     /calculated_mol_wt=206168
     Region          36..173
                     /region_name="Pep_M12B_propep"
                     /note="Reprolysin family propeptide; pfam01562"
                     /db_xref="CDD:460254"
     Region          248..454
                     /region_name="ZnMc_ADAMTS_like"
                     /note="Zinc-dependent metalloprotease, ADAMTS_like
                     subgroup. ADAMs (A Disintegrin And Metalloprotease) are
                     glycoproteins, which play roles in cell signaling, cell
                     fusion, and cell-cell interactions. This particular
                     subfamily represents domain architectures that...;
                     cd04273"
                     /db_xref="CDD:239801"
     Site            order(392..393,396,402)
                     /site_type="active"
                     /db_xref="CDD:239801"
     Region          469..536
                     /region_name="ADAMTS_CR_2"
                     /note="ADAMTS cysteine-rich domain 2; pfam17771"
                     /db_xref="CDD:465496"
     Region          549..601
                     /region_name="TSP1"
                     /note="Thrombospondin type 1 repeats; smart00209"
                     /db_xref="CDD:214559"
     Region          606..710
                     /region_name="ADAMTS_CR_3"
                     /note="ADAMTS cysteine-rich domain; pfam19236"
                     /db_xref="CDD:437068"
     Region          712..829
                     /region_name="ADAMTS_spacer1"
                     /note="ADAM-TS Spacer 1; pfam05986"
                     /db_xref="CDD:461796"
     Region          842..890
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          959..1011
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1014..1066
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1069..1124
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1146..1198
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1201..1253
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1298..1349
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1352..1405
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1411..1464
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1467..1520
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1584..1633
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1637..1834
                     /region_name="GON"
                     /note="GON domain; pfam08685"
                     /db_xref="CDD:462559"
     CDS             1..1835
                     /gene="ADAMTS20"
                     /coded_by="XM_054056073.1:2..5509"
                     /db_xref="GeneID:104062419"
ORIGIN      
        1 mrgaaallcl laaawaghra pltaqessae rlssyeivtp vrvnefgeaf pparhfsrrr
       61 rrslepaasr ahyrlsaygq vfrlnlsada gfvaaryrve hagapreppg pdlrhcfyrg
      121 hvnaqeahra vfsicgglmg tfkthdgeyf leplmkadgg dhedehnkph liyrheelkk
      181 kyqkshkpce vsekdmkstl lhptfsslne dsnvlqksls leytlnnlsi kddgnphsrk
      241 krflsypryv evmvtadtkm vrhhgqnlqh yiltlmsiva aiykdssign linivivkli
      301 vihneqegpa itfnaattlr nfclwqqaqn tlddshpshh dtavlitred icrarekcdt
      361 lglaelgtmc dplrscsise englsaafti ahelghvfnv phddsfkcke agikhqyhvm
      421 aptlnyhtsp wtwskcsqky itefldtgyg eclldkpsgk iydlssqlpg smydvnkqce
      481 lmfgvgsqvc pylkqckrlw ctstegvhkg crtqhmplad gtvcgvgmhc rhgicvsrem
      541 etrpvdgewg pwgpysscsr tcgggiksst rlcnrpeprn ggkycvgrrm kfrscntdsc
      601 pkgkkdfreq qcsefdgkhf ningltsavr wlpkysgism kdrcklfcrv sgttsyyqlk
      661 drvadgtpcg petndlcvqg lcrqagcdhv lnskarrdkc gicggdnssc ktltgtfnsa
      721 rygynvvvni prgatnidiq qhsysgkped dnylalsdih gnfilngnfv vsmskreini
      781 qgaifeysgs nstierinst drveeeltlq vlcvgnlysp dvrysfnipi edrsdlftwn
      841 pygpwqdcsr mcqgvrrrrm icirksdhvi vsdqrcelip avpdvfekcn tecelrwhnf
      901 gksdctskcg pgyrsieihc mkysiskgls vpvddkycad qqkpptrepc hgdcmstswh
      961 ytewsecsrs cergvrtrea fcmnslgrhl pdrecqelpr vvtqscnefl cpswsvsews
     1021 ecpvtcgkgm khrqvwchln deqlrddfcn pddrpesiip celhecaswq vgpwgsctvt
     1081 cgrgyqmrav kcvtgtyrvi ldddrecnaa trprdnqece lpscpentkl wttllplvqv
     1141 gkvtqwrygs wtpcsascgk gdraryvscr dayggiadds fcahlprpae isscfspcge
     1201 wqvgnwspct vtcdsgivtr qvicinyhqq inenycdpeg rpskeqecnm ppcppvyrdi
     1261 lkihdqpshf peigyvpihh pqdninqrnr psvggyqwrt gpwgacsstc aggfhrrvvv
     1321 cqdeegrsas ycdeatkppe sthcdsgpcp rwnygnwgec tqtcgagikt rlvicqlptg
     1381 qilgdqncei ldkppnmaqc nvhscpgevs whrgpwkscs vscgkglkfr dvrcfnsfqa
     1441 eieegncrhl kkprtykicr agrcpawkas rwkecsvscg vgveqrdvyc elkglgqvte
     1501 amcnpgtqpa skrhcwlpac rqyqwlegew edclasyrrk evhrkvkcvd enqlqvddif
     1561 cdpatkplst kkcritpsky vvltgdlsqc svscgvgvke rtvecmteng lssnlclphl
     1621 kpdarkicre eeceilttck diqikkgirk dgeyllnikg rilkiycsdm hlenpkeylt
     1681 llkgeadnfs evygfrlqnp yecpfngsrk qdcacrndyl aagftvfski rfdvasmqik
     1741 ttdflfaqti lgravpfata gdcysaarcp qgqfsinlag tglrlsskvr wiaqgnyata
     1801 dihkshdgtk iygrcggfcg kcipstitgl qlqiq
//
LOCUS       XP_053912050            1826 aa            linear   VRT 09-MAR-2023
DEFINITION  A disintegrin and metalloproteinase with thrombospondin motifs 20
            isoform X8 [Cuculus canorus].
ACCESSION   XP_053912050
VERSION     XP_053912050.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056075.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1826
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1826
                     /product="A disintegrin and metalloproteinase with
                     thrombospondin motifs 20 isoform X8"
                     /calculated_mol_wt=205233
     Region          36..173
                     /region_name="Pep_M12B_propep"
                     /note="Reprolysin family propeptide; pfam01562"
                     /db_xref="CDD:460254"
     Region          248..454
                     /region_name="ZnMc_ADAMTS_like"
                     /note="Zinc-dependent metalloprotease, ADAMTS_like
                     subgroup. ADAMs (A Disintegrin And Metalloprotease) are
                     glycoproteins, which play roles in cell signaling, cell
                     fusion, and cell-cell interactions. This particular
                     subfamily represents domain architectures that...;
                     cd04273"
                     /db_xref="CDD:239801"
     Site            order(392..393,396,402)
                     /site_type="active"
                     /db_xref="CDD:239801"
     Region          469..536
                     /region_name="ADAMTS_CR_2"
                     /note="ADAMTS cysteine-rich domain 2; pfam17771"
                     /db_xref="CDD:465496"
     Region          549..601
                     /region_name="TSP1"
                     /note="Thrombospondin type 1 repeats; smart00209"
                     /db_xref="CDD:214559"
     Region          606..710
                     /region_name="ADAMTS_CR_3"
                     /note="ADAMTS cysteine-rich domain; pfam19236"
                     /db_xref="CDD:437068"
     Region          712..>754
                     /region_name="ADAMTS_spacer1"
                     /note="ADAM-TS Spacer 1; pfam05986"
                     /db_xref="CDD:461796"
     Region          766..814
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          883..935
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          938..990
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          993..1048
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1070..1122
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1125..1177
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1222..1273
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1276..1329
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1335..1388
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1391..1444
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1573..1624
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1628..1825
                     /region_name="GON"
                     /note="GON domain; pfam08685"
                     /db_xref="CDD:462559"
     CDS             1..1826
                     /gene="ADAMTS20"
                     /coded_by="XM_054056075.1:2..5482"
                     /db_xref="GeneID:104062419"
ORIGIN      
        1 mrgaaallcl laaawaghra pltaqessae rlssyeivtp vrvnefgeaf pparhfsrrr
       61 rrslepaasr ahyrlsaygq vfrlnlsada gfvaaryrve hagapreppg pdlrhcfyrg
      121 hvnaqeahra vfsicgglmg tfkthdgeyf leplmkadgg dhedehnkph liyrheelkk
      181 kyqkshkpce vsekdmkstl lhptfsslne dsnvlqksls leytlnnlsi kddgnphsrk
      241 krflsypryv evmvtadtkm vrhhgqnlqh yiltlmsiva aiykdssign linivivkli
      301 vihneqegpa itfnaattlr nfclwqqaqn tlddshpshh dtavlitred icrarekcdt
      361 lglaelgtmc dplrscsise englsaafti ahelghvfnv phddsfkcke agikhqyhvm
      421 aptlnyhtsp wtwskcsqky itefldtgyg eclldkpsgk iydlssqlpg smydvnkqce
      481 lmfgvgsqvc pylkqckrlw ctstegvhkg crtqhmplad gtvcgvgmhc rhgicvsrem
      541 etrpvdgewg pwgpysscsr tcgggiksst rlcnrpeprn ggkycvgrrm kfrscntdsc
      601 pkgkkdfreq qcsefdgkhf ningltsavr wlpkysgism kdrcklfcrv sgttsyyqlk
      661 drvadgtpcg petndlcvqg lcrqagcdhv lnskarrdkc gicggdnssc ktltgtfnsa
      721 rygynvvvni prgatnidiq qhsysgkped dnyledrsdl ftwnpygpwq dcsrmcqgvr
      781 rrrmicirks dhvivsdqrc elipavpdvf ekcntecelr whnfgksdct skcgpgyrsi
      841 eihcmkysis kglsvpvddk ycadqqkppt repchgdcms tswhytewse csrscergvr
      901 treafcmnsl grhlpdrecq elprvvtqsc neflcpswsv sewsecpvtc gkgmkhrqvw
      961 chlndeqlrd dfcnpddrpe siipcelhec aswqvgpwgs ctvtcgrgyq mravkcvtgt
     1021 yrvildddre cnaatrprdn qecelpscpe ntklwttllp lvqvgkvtqw rygswtpcsa
     1081 scgkgdrary vscrdayggi addsfcahlp rpaeisscfs pcgewqvgnw spctvtcdsg
     1141 ivtrqvicin yhqqinenyc dpegrpskeq ecnmppcppv yrdilkihdq pshfpeigyv
     1201 pihhpqdnin qrnrpsvggy qwrtgpwgac sstcaggfhr rvvvcqdeeg rsasycdeat
     1261 kppesthcds gpcprwnygn wgectqtcga giktrlvicq lptgqilgdq nceildkppn
     1321 maqcnvhscp gevswhrgpw kscsvscgkg lkfrdvrcfn sfqaeieegn crhlkkprty
     1381 kicragrcpa wkasrwkecs vscgvgveqr dvycelkglg qvteamcnpg tqpaskrhcw
     1441 lpacrqyqwl egewedclas yrrkevhrkv kcvdenqlqv ddifcdpatk plstkkcrit
     1501 pskyvvltgd lsqcsdscgf hyqqritycv gihslqnqya hglrtvayqe cpvgpspyny
     1561 ncnlkgcsqa aswrvgkwtk csvscgvgvk ertvecmten glssnlclph lkpdarkicr
     1621 eeeceilttc kdiqikkgir kdgeyllnik grilkiycsd mhlenpkeyl tllkgeadnf
     1681 sevygfrlqn pyecpfngsr kqdcacrndy laagftvfsk irfdvasmqi kttdflfaqt
     1741 ilgravpfat agdcysaarc pqgqfsinla gtglrlsskv rwiaqgnyat adihkshdgt
     1801 kiygrcggfc gkcipstitg lqlqiq
//
LOCUS       XP_053912051            1719 aa            linear   VRT 09-MAR-2023
DEFINITION  A disintegrin and metalloproteinase with thrombospondin motifs 20
            isoform X9 [Cuculus canorus].
ACCESSION   XP_053912051
VERSION     XP_053912051.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056076.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1719
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1719
                     /product="A disintegrin and metalloproteinase with
                     thrombospondin motifs 20 isoform X9"
                     /calculated_mol_wt=193630
     Region          36..173
                     /region_name="Pep_M12B_propep"
                     /note="Reprolysin family propeptide; pfam01562"
                     /db_xref="CDD:460254"
     Region          248..454
                     /region_name="ZnMc_ADAMTS_like"
                     /note="Zinc-dependent metalloprotease, ADAMTS_like
                     subgroup. ADAMs (A Disintegrin And Metalloprotease) are
                     glycoproteins, which play roles in cell signaling, cell
                     fusion, and cell-cell interactions. This particular
                     subfamily represents domain architectures that...;
                     cd04273"
                     /db_xref="CDD:239801"
     Site            order(392..393,396,402)
                     /site_type="active"
                     /db_xref="CDD:239801"
     Region          469..536
                     /region_name="ADAMTS_CR_2"
                     /note="ADAMTS cysteine-rich domain 2; pfam17771"
                     /db_xref="CDD:465496"
     Region          549..601
                     /region_name="TSP1"
                     /note="Thrombospondin type 1 repeats; smart00209"
                     /db_xref="CDD:214559"
     Region          606..710
                     /region_name="ADAMTS_CR_3"
                     /note="ADAMTS cysteine-rich domain; pfam19236"
                     /db_xref="CDD:437068"
     Region          712..829
                     /region_name="ADAMTS_spacer1"
                     /note="ADAM-TS Spacer 1; pfam05986"
                     /db_xref="CDD:461796"
     Region          842..890
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          959..1011
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1014..1066
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1069..1124
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1146..1198
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1201..1253
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1298..1349
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1352..1405
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1411..1464
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1467..1520
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     Region          1649..1698
                     /region_name="TSP1_ADAMTS"
                     /note="Thrombospondin type 1 domain; pfam19030"
                     /db_xref="CDD:465950"
     CDS             1..1719
                     /gene="ADAMTS20"
                     /coded_by="XM_054056076.1:2..5161"
                     /db_xref="GeneID:104062419"
ORIGIN      
        1 mrgaaallcl laaawaghra pltaqessae rlssyeivtp vrvnefgeaf pparhfsrrr
       61 rrslepaasr ahyrlsaygq vfrlnlsada gfvaaryrve hagapreppg pdlrhcfyrg
      121 hvnaqeahra vfsicgglmg tfkthdgeyf leplmkadgg dhedehnkph liyrheelkk
      181 kyqkshkpce vsekdmkstl lhptfsslne dsnvlqksls leytlnnlsi kddgnphsrk
      241 krflsypryv evmvtadtkm vrhhgqnlqh yiltlmsiva aiykdssign linivivkli
      301 vihneqegpa itfnaattlr nfclwqqaqn tlddshpshh dtavlitred icrarekcdt
      361 lglaelgtmc dplrscsise englsaafti ahelghvfnv phddsfkcke agikhqyhvm
      421 aptlnyhtsp wtwskcsqky itefldtgyg eclldkpsgk iydlssqlpg smydvnkqce
      481 lmfgvgsqvc pylkqckrlw ctstegvhkg crtqhmplad gtvcgvgmhc rhgicvsrem
      541 etrpvdgewg pwgpysscsr tcgggiksst rlcnrpeprn ggkycvgrrm kfrscntdsc
      601 pkgkkdfreq qcsefdgkhf ningltsavr wlpkysgism kdrcklfcrv sgttsyyqlk
      661 drvadgtpcg petndlcvqg lcrqagcdhv lnskarrdkc gicggdnssc ktltgtfnsa
      721 rygynvvvni prgatnidiq qhsysgkped dnylalsdih gnfilngnfv vsmskreini
      781 qgaifeysgs nstierinst drveeeltlq vlcvgnlysp dvrysfnipi edrsdlftwn
      841 pygpwqdcsr mcqgvrrrrm icirksdhvi vsdqrcelip avpdvfekcn tecelrwhnf
      901 gksdctskcg pgyrsieihc mkysiskgls vpvddkycad qqkpptrepc hgdcmstswh
      961 ytewsecsrs cergvrtrea fcmnslgrhl pdrecqelpr vvtqscnefl cpswsvsews
     1021 ecpvtcgkgm khrqvwchln deqlrddfcn pddrpesiip celhecaswq vgpwgsctvt
     1081 cgrgyqmrav kcvtgtyrvi ldddrecnaa trprdnqece lpscpentkl wttllplvqv
     1141 gkvtqwrygs wtpcsascgk gdraryvscr dayggiadds fcahlprpae isscfspcge
     1201 wqvgnwspct vtcdsgivtr qvicinyhqq inenycdpeg rpskeqecnm ppcppvyrdi
     1261 lkihdqpshf peigyvpihh pqdninqrnr psvggyqwrt gpwgacsstc aggfhrrvvv
     1321 cqdeegrsas ycdeatkppe sthcdsgpcp rwnygnwgec tqtcgagikt rlvicqlptg
     1381 qilgdqncei ldkppnmaqc nvhscpgevs whrgpwkscs vscgkglkfr dvrcfnsfqa
     1441 eieegncrhl kkprtykicr agrcpawkas rwkecsvscg vgveqrdvyc elkglgqvte
     1501 amcnpgtqpa skrhcwlpac rqyqwlegew edclasyrrk evhrkvkcvd enqlqvddif
     1561 cdpatkplst kkcritpsky vvltgdlsqc sdscgfhyqq ritycvgihs lqnqyahglr
     1621 tvayqecpvg pspynyncnl kgcsqaaswr vgkwtkcsvs cgvgvkertv ecmtenglss
     1681 nlclphlkpd arkicreeey lllrhalres qrifdvakr
//
LOCUS       XP_053912052            1517 aa            linear   VRT 09-MAR-2023
DEFINITION  phospholipid-transporting ATPase VA isoform X1 [Cuculus canorus].
ACCESSION   XP_053912052
VERSION     XP_053912052.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056077.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1517
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1517
                     /product="phospholipid-transporting ATPase VA isoform X1"
                     /calculated_mol_wt=170702
     Region          58..1183
                     /region_name="P-type_ATPase_APLT_Dnf-like"
                     /note="Aminophospholipid translocases (APLTs), similar to
                     Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2,
                     -10D, -11B, -11C; cd02073"
                     /db_xref="CDD:319770"
     Site            order(425..427,738,762..764,838,885..887,999,1002,1005,
                     1025,1028)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:319770"
     CDS             1..1517
                     /gene="ATP10A"
                     /coded_by="XM_054056077.1:162..4715"
                     /db_xref="GeneID:104056709"
ORIGIN      
        1 msqgtaggeg aaqvlpegkk rqrrrrrrkk kesktrlvcs nllpeaevek skrtvlasnr
       61 lkttkytvls flpknlfeqf hrlanvyfvf iallnfvpav nafqpelala pvlfilavta
      121 ikdlwedysr ylsdkeinhm eclvysrnek kyisrywkev kvgdfvqlrc neiipadill
      181 lsssdpdglc hietanldge tnlkqrqvvr rfleldsefd plkftsviec ekpnndlsrf
      241 rgyivhksgk kdglfkenll lrgctvrnte evagiviyag hetkallnnn gprykrskle
      301 rqmnadvlwc vlillimclf saighglwvw qygekkkpif dvpgpdgkyl spvlasvylf
      361 ltviivfqvm ipislyvsie ivkicqvyfi hqdkdlydee tdsqlqcral nitedlgqvq
      421 fifsdktgtl tenkmvfrrc tvsgteyshd dnakrlamyq epdseedeaa pkggtlsqrd
      481 sicshqsikv ihrsqstkth rrtgsraeak rasilskhta fsspmekdit pdpsllekvn
      541 ecakrlevmr sheqplshls pelcdifdff ialticntvv vtapnqprqk vrdrlelksp
      601 vktiedfirr ftpsrltsgs nsssssslat sksmhrfgls vlsctstdst llkleeklay
      661 saqmnnngys sqqgrtavgs gpeegelrye aespdeaalv yaarayncsl vgrlsdqvsv
      721 elphlgtlsf evlhtlgfds irkrmsvvvr hpltdeinvy tkgadavimd lllpcssddp
      781 rgkhqkkiqs ktqnylnlya vdglrtlcia krvlskeeya cwlkshleae ssienreell
      841 fqsalriekn lhllgatgie drlqdgvpet ianlrkaglq iwvltgdkqe tavniayack
      901 lldhdeeiit lnaespetca vlleqclqcv dskfsnntid eatgnmtvgf tplyppsssv
      961 lsslglvidg rtlayalept ledkflalak rcrsvlccrs tpiqksmvvk lvrdklkamt
     1021 laigdgandv smiqvadvgv gisgqegmqa vmasdfaipr frhleklllv hghwcysrla
     1081 nmvlyffykn amfvallfwy qfycgfsgss midqwyliff nllfsslpql itgvldkdvp
     1141 aemliavpql yksgqnmeey qphmfwmnmi damyqslvcf fipyftyyds evdifswgtp
     1201 ittialftii lhlaietktw tflhwsscif sillfffval vynascpvch ppsnpywtme
     1261 rlmgdpmfyl tciispvial lprflyrtlq gtlfptqlql gcqlsklspe irtqlltkln
     1321 vketihqtqs fvnsfspslg ssasdcykaf nqstplptpp qrgeshfqdh tkaeytadrt
     1381 vaaspqsavl ygekklpspa sslersmgfh evrhgiseie slpmgatfpw ssavdqadfs
     1441 llkwitstpl fsrigtvlqv pssslqnetq dstcvlgssl hvdfkglkeq slsnlqdkmk
     1501 gtatdhcknd nsettfl
//
LOCUS       XP_053912053            1475 aa            linear   VRT 09-MAR-2023
DEFINITION  phospholipid-transporting ATPase VA isoform X2 [Cuculus canorus].
ACCESSION   XP_053912053
VERSION     XP_053912053.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056078.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1475
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1475
                     /product="phospholipid-transporting ATPase VA isoform X2"
                     /calculated_mol_wt=165690
     Region          58..1141
                     /region_name="Haloacid Dehalogenase-like Hydrolases"
                     /note="The haloacid dehalogenase (HAD) superfamily
                     includes carbon and phosphorus hydrolases such as
                     2-haloalkonoate dehalogenase, epoxide hydrolase,
                     phosphoserine phosphatase, phosphomannomutase,
                     phosphoglycolate phosphatase, P-type ATPase, among others.
                     These...; cl21460"
                     /db_xref="CDD:473868"
     Site            order(425..429,885..886,1005,1024..1025,1028..1029)
                     /site_type="active"
                     /db_xref="CDD:319763"
     Region          1050..1254
                     /region_name="PhoLip_ATPase_C"
                     /note="Phospholipid-translocating P-type ATPase
                     C-terminal; pfam16212"
                     /db_xref="CDD:465071"
     CDS             1..1475
                     /gene="ATP10A"
                     /coded_by="XM_054056078.1:162..4589"
                     /db_xref="GeneID:104056709"
ORIGIN      
        1 msqgtaggeg aaqvlpegkk rqrrrrrrkk kesktrlvcs nllpeaevek skrtvlasnr
       61 lkttkytvls flpknlfeqf hrlanvyfvf iallnfvpav nafqpelala pvlfilavta
      121 ikdlwedysr ylsdkeinhm eclvysrnek kyisrywkev kvgdfvqlrc neiipadill
      181 lsssdpdglc hietanldge tnlkqrqvvr rfleldsefd plkftsviec ekpnndlsrf
      241 rgyivhksgk kdglfkenll lrgctvrnte evagiviyag hetkallnnn gprykrskle
      301 rqmnadvlwc vlillimclf saighglwvw qygekkkpif dvpgpdgkyl spvlasvylf
      361 ltviivfqvm ipislyvsie ivkicqvyfi hqdkdlydee tdsqlqcral nitedlgqvq
      421 fifsdktgtl tenkmvfrrc tvsgteyshd dnakrlamyq epdseedeaa pkggtlsqrd
      481 sicshqsikv ihrsqstkth rrtgsraeak rasilskhta fsspmekdit pdpsllekvn
      541 ecakrlevmr sheqplshls pelcdifdff ialticntvv vtapnqprqk vrdrlelksp
      601 vktiedfirr ftpsrltsgs nsssssslat sksmhrfgls vlsctstdst llkleeklay
      661 saqmnnngys sqqgrtavgs gpeegelrye aespdeaalv yaarayncsl vgrlsdqvsv
      721 elphlgtlsf evlhtlgfds irkrmsvvvr hpltdeinvy tkgadavimd lllpcssddp
      781 rgkhqkkiqs ktqnylnlya vdglrtlcia krvlskeeya cwlkshleae ssienreell
      841 fqsalriekn lhllgatgie drlqdgvpet ianlrkaglq iwvltgdkqe tavniayack
      901 lldhdeeiit lnaespetca vlleqclqcv dskfsnntid eatgnmtvgf tplyppsssv
      961 lsslglvidg rtlayalept ledkflalak rcrsvlccrs tpiqksmvvk lvrdklkamt
     1021 laigdgandv smiqvadvgv gisgqegmqm fvallfwyqf ycgfsgssmi dqwyliffnl
     1081 lfsslpqlit gvldkdvpae mliavpqlyk sgqnmeeyqp hmfwmnmida myqslvcffi
     1141 pyftyydsev difswgtpit tialftiilh laietktwtf lhwsscifsi llfffvalvy
     1201 nascpvchpp snpywtmerl mgdpmfyltc iispviallp rflyrtlqgt lfptqlqlgc
     1261 qlsklspeir tqlltklnvk etihqtqsfv nsfspslgss asdcykafnq stplptppqr
     1321 geshfqdhtk aeytadrtva aspqsavlyg ekklpspass lersmgfhev rhgiseiesl
     1381 pmgatfpwss avdqadfsll kwitstplfs rigtvlqvps sslqnetqds tcvlgsslhv
     1441 dfkglkeqsl snlqdkmkgt atdhckndns ettfl
//
LOCUS       XP_009569842             649 aa            linear   VRT 09-MAR-2023
DEFINITION  WW domain-binding protein 11 [Cuculus canorus].
ACCESSION   XP_009569842
VERSION     XP_009569842.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009571547.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..649
                     /product="WW domain-binding protein 11"
                     /calculated_mol_wt=70804
     Region          12..92
                     /region_name="Wbp11"
                     /note="WW domain binding protein 11; pfam09429"
                     /db_xref="CDD:462795"
     CDS             1..649
                     /gene="WBP11"
                     /coded_by="XM_009571547.2:209..2158"
                     /db_xref="GeneID:104068643"
ORIGIN      
        1 mgrrstsstk sgkfmnptdq arkearkrel kknkkqrmmv raavlkmkdp kqiirdmekl
       61 demefnpvqq pqlnekvlkd krkklretfe rilrlyeken pdiykelrkl eveyeqkrsq
      121 lsqyfdavkn aqhvevesip lpdmphapsn iliqdiplpg aqppsilkkt saygppvrsi
      181 svlpppglgi prlppgrkpp gpppgppppq vlqmygrkvg faletaprrr eeeisyssea
      241 gqrghddems stsedegype dmeqdkhdes sddsdsdrsd adsegedflh rdndkeregg
      301 eekksghsvr fadmpgksrk kkknmkeltp lqammlrmag qeipeegrev eeyseeeeee
      361 eeeseseets qqqqqqqlse ealaetgsst atsqtqqqqp ppqtgppaqi qappmpgppp
      421 lgpppapplr ppgpptglpp gpppgappfl rppglpglrg plprllppgp ppgrppgppp
      481 gpppglppgp pprgppprlp ppappgippp rpgmlrpplv pplgpappgl fppapipnpg
      541 vlsappsliq rpkaddtsaa tiekkatati sakpqitnpk aeitrfvpta lrvrrenkga
      601 saasqrkqdd epalpltkaa pkagsaapis vqtkddvyea fmkemegll
//
LOCUS       XP_009555693             167 aa            linear   VRT 09-MAR-2023
DEFINITION  neurotensin/neuromedin N [Cuculus canorus].
ACCESSION   XP_009555693
VERSION     XP_009555693.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557398.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..167
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..167
                     /product="neurotensin/neuromedin N"
                     /calculated_mol_wt=19082
     Region          6..167
                     /region_name="Pro-NT_NN"
                     /note="Neurotensin/neuromedin N precursor; pfam07421"
                     /db_xref="CDD:462161"
     CDS             1..167
                     /gene="NTS"
                     /coded_by="XM_009557398.2:194..697"
                     /db_xref="GeneID:104056176"
ORIGIN      
        1 marmraqlvc vvllalascg lgsdseeemk aleadlltnm ytskinrakl pywkmtllnv
       61 cnlvnninnq vgetveadee dlisgrqfpa aldgfsleam ltvyqlqkvc hsrafqhwel
      121 lqqdaldlen ssqdkeimkr knpyilkrql hvnkarrpyi lkrssyy
//
LOCUS       XP_053912054             420 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA repair protein RAD52 homolog [Cuculus canorus].
ACCESSION   XP_053912054
VERSION     XP_053912054.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056079.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..420
                     /product="DNA repair protein RAD52 homolog"
                     /calculated_mol_wt=46499
     Region          39..200
                     /region_name="rad52"
                     /note="recombination protein rad52; TIGR00607"
                     /db_xref="CDD:129695"
     CDS             1..420
                     /gene="RAD52"
                     /coded_by="XM_054056079.1:263..1525"
                     /db_xref="GeneID:104055907"
ORIGIN      
        1 mpesqgrdse shisnnssst snsaacfgqy qytaseyqai qhalrqrlgp eyissrqagg
       61 gqkvcyiegh kvislanemf gfngwahsvt qqnvdfvdln ngrfyvgvca fvkvqlkdgs
      121 yhedvgygvs eglkskalsl ekarkeavtd glkralkcfg nalgncildk dylravnklp
      181 rqtppeldlv kakredyepe iekarynscl erqsaggrqh cevastckpg rteaavamvd
      241 qkepnssrnp dslaiecdat yqrklrqkql qqqfreqmek khqvpvvtpn gkqatsdppg
      301 khstpeaaqq dlaieeeffa ddpelwdisl etmdlkmmgh kmadasagcq tsetpcghhq
      361 mitrnrtphr mnhhkaaarl aqlqpsatim snsgcanqqa pecsprgrsq glkkrrlept
//
LOCUS       XP_053912055             420 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA repair protein RAD52 homolog [Cuculus canorus].
ACCESSION   XP_053912055
VERSION     XP_053912055.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056080.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..420
                     /product="DNA repair protein RAD52 homolog"
                     /calculated_mol_wt=46499
     Region          39..200
                     /region_name="rad52"
                     /note="recombination protein rad52; TIGR00607"
                     /db_xref="CDD:129695"
     CDS             1..420
                     /gene="RAD52"
                     /coded_by="XM_054056080.1:197..1459"
                     /db_xref="GeneID:104055907"
ORIGIN      
        1 mpesqgrdse shisnnssst snsaacfgqy qytaseyqai qhalrqrlgp eyissrqagg
       61 gqkvcyiegh kvislanemf gfngwahsvt qqnvdfvdln ngrfyvgvca fvkvqlkdgs
      121 yhedvgygvs eglkskalsl ekarkeavtd glkralkcfg nalgncildk dylravnklp
      181 rqtppeldlv kakredyepe iekarynscl erqsaggrqh cevastckpg rteaavamvd
      241 qkepnssrnp dslaiecdat yqrklrqkql qqqfreqmek khqvpvvtpn gkqatsdppg
      301 khstpeaaqq dlaieeeffa ddpelwdisl etmdlkmmgh kmadasagcq tsetpcghhq
      361 mitrnrtphr mnhhkaaarl aqlqpsatim snsgcanqqa pecsprgrsq glkkrrlept
//
LOCUS       XP_053912057             420 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA repair protein RAD52 homolog [Cuculus canorus].
ACCESSION   XP_053912057
VERSION     XP_053912057.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056082.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..420
                     /product="DNA repair protein RAD52 homolog"
                     /calculated_mol_wt=46499
     Region          39..200
                     /region_name="rad52"
                     /note="recombination protein rad52; TIGR00607"
                     /db_xref="CDD:129695"
     CDS             1..420
                     /gene="RAD52"
                     /coded_by="XM_054056082.1:220..1482"
                     /db_xref="GeneID:104055907"
ORIGIN      
        1 mpesqgrdse shisnnssst snsaacfgqy qytaseyqai qhalrqrlgp eyissrqagg
       61 gqkvcyiegh kvislanemf gfngwahsvt qqnvdfvdln ngrfyvgvca fvkvqlkdgs
      121 yhedvgygvs eglkskalsl ekarkeavtd glkralkcfg nalgncildk dylravnklp
      181 rqtppeldlv kakredyepe iekarynscl erqsaggrqh cevastckpg rteaavamvd
      241 qkepnssrnp dslaiecdat yqrklrqkql qqqfreqmek khqvpvvtpn gkqatsdppg
      301 khstpeaaqq dlaieeeffa ddpelwdisl etmdlkmmgh kmadasagcq tsetpcghhq
      361 mitrnrtphr mnhhkaaarl aqlqpsatim snsgcanqqa pecsprgrsq glkkrrlept
//
LOCUS       XP_053912058             473 aa            linear   VRT 09-MAR-2023
DEFINITION  cystine/glutamate transporter [Cuculus canorus].
ACCESSION   XP_053912058
VERSION     XP_053912058.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056083.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..473
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..473
                     /product="cystine/glutamate transporter"
                     /calculated_mol_wt=52619
     Region          8..469
                     /region_name="2A0308"
                     /note="L-type amino acid transporter; TIGR00911"
                     /db_xref="CDD:273332"
     CDS             1..473
                     /gene="LOC104058938"
                     /coded_by="XM_054056083.1:2403..3824"
                     /db_xref="GeneID:104058938"
ORIGIN      
        1 mgkdkkdeav flrkkitllr afslligsmv gsgifispkg vlknsgsvgf slvvwfacgl
       61 lsmfgalcya elgtritksg ghyiyiletl gplpgflflw aeffairpan savvslafgr
      121 ymlepffapc aapvpavklv sllgyytvlt lnswsvtwsa rlqtalsivk llalaliivp
      181 gmmllaqght enfqdafdrq slvldklpla fyagmfaysg wfqtsfvree lvrpernipl
      241 avivsvitvi vgymltnvsy ytvlgkqdvl aspavavsfv qrafkslisv vpvlvalscf
      301 gtmnggiftf srtlfvasre gqwpplfsmi hirrhtplpa vmlmfplvta mvcigdiyhl
      361 lnffsfsrwl figlatlgli vhryrhpelh spfkvplfvp vsftiiclft vamsfysdpv
      421 nisigctmvl sgfpvyylii hrqmsnrccr pfyylthklq lllevvqqev kty
//
LOCUS       XP_053912059             473 aa            linear   VRT 09-MAR-2023
DEFINITION  cystine/glutamate transporter [Cuculus canorus].
ACCESSION   XP_053912059
VERSION     XP_053912059.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056084.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..473
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..473
                     /product="cystine/glutamate transporter"
                     /calculated_mol_wt=52619
     Region          8..469
                     /region_name="2A0308"
                     /note="L-type amino acid transporter; TIGR00911"
                     /db_xref="CDD:273332"
     CDS             1..473
                     /gene="LOC104058938"
                     /coded_by="XM_054056084.1:486..1907"
                     /db_xref="GeneID:104058938"
ORIGIN      
        1 mgkdkkdeav flrkkitllr afslligsmv gsgifispkg vlknsgsvgf slvvwfacgl
       61 lsmfgalcya elgtritksg ghyiyiletl gplpgflflw aeffairpan savvslafgr
      121 ymlepffapc aapvpavklv sllgyytvlt lnswsvtwsa rlqtalsivk llalaliivp
      181 gmmllaqght enfqdafdrq slvldklpla fyagmfaysg wfqtsfvree lvrpernipl
      241 avivsvitvi vgymltnvsy ytvlgkqdvl aspavavsfv qrafkslisv vpvlvalscf
      301 gtmnggiftf srtlfvasre gqwpplfsmi hirrhtplpa vmlmfplvta mvcigdiyhl
      361 lnffsfsrwl figlatlgli vhryrhpelh spfkvplfvp vsftiiclft vamsfysdpv
      421 nisigctmvl sgfpvyylii hrqmsnrccr pfyylthklq lllevvqqev kty
//
LOCUS       XP_009558823             473 aa            linear   VRT 09-MAR-2023
DEFINITION  cystine/glutamate transporter [Cuculus canorus].
ACCESSION   XP_009558823
VERSION     XP_009558823.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560528.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009558823.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..473
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..473
                     /product="cystine/glutamate transporter"
                     /calculated_mol_wt=52619
     Region          8..469
                     /region_name="2A0308"
                     /note="L-type amino acid transporter; TIGR00911"
                     /db_xref="CDD:273332"
     CDS             1..473
                     /gene="LOC104058938"
                     /coded_by="XM_009560528.2:2129..3550"
                     /db_xref="GeneID:104058938"
ORIGIN      
        1 mgkdkkdeav flrkkitllr afslligsmv gsgifispkg vlknsgsvgf slvvwfacgl
       61 lsmfgalcya elgtritksg ghyiyiletl gplpgflflw aeffairpan savvslafgr
      121 ymlepffapc aapvpavklv sllgyytvlt lnswsvtwsa rlqtalsivk llalaliivp
      181 gmmllaqght enfqdafdrq slvldklpla fyagmfaysg wfqtsfvree lvrpernipl
      241 avivsvitvi vgymltnvsy ytvlgkqdvl aspavavsfv qrafkslisv vpvlvalscf
      301 gtmnggiftf srtlfvasre gqwpplfsmi hirrhtplpa vmlmfplvta mvcigdiyhl
      361 lnffsfsrwl figlatlgli vhryrhpelh spfkvplfvp vsftiiclft vamsfysdpv
      421 nisigctmvl sgfpvyylii hrqmsnrccr pfyylthklq lllevvqqev kty
//
LOCUS       XP_053912060             473 aa            linear   VRT 09-MAR-2023
DEFINITION  cystine/glutamate transporter [Cuculus canorus].
ACCESSION   XP_053912060
VERSION     XP_053912060.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056085.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..473
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..473
                     /product="cystine/glutamate transporter"
                     /calculated_mol_wt=52619
     Region          8..469
                     /region_name="2A0308"
                     /note="L-type amino acid transporter; TIGR00911"
                     /db_xref="CDD:273332"
     CDS             1..473
                     /gene="LOC104058938"
                     /coded_by="XM_054056085.1:2127..3548"
                     /db_xref="GeneID:104058938"
ORIGIN      
        1 mgkdkkdeav flrkkitllr afslligsmv gsgifispkg vlknsgsvgf slvvwfacgl
       61 lsmfgalcya elgtritksg ghyiyiletl gplpgflflw aeffairpan savvslafgr
      121 ymlepffapc aapvpavklv sllgyytvlt lnswsvtwsa rlqtalsivk llalaliivp
      181 gmmllaqght enfqdafdrq slvldklpla fyagmfaysg wfqtsfvree lvrpernipl
      241 avivsvitvi vgymltnvsy ytvlgkqdvl aspavavsfv qrafkslisv vpvlvalscf
      301 gtmnggiftf srtlfvasre gqwpplfsmi hirrhtplpa vmlmfplvta mvcigdiyhl
      361 lnffsfsrwl figlatlgli vhryrhpelh spfkvplfvp vsftiiclft vamsfysdpv
      421 nisigctmvl sgfpvyylii hrqmsnrccr pfyylthklq lllevvqqev kty
//
LOCUS       XP_053912061             473 aa            linear   VRT 09-MAR-2023
DEFINITION  cystine/glutamate transporter [Cuculus canorus].
ACCESSION   XP_053912061
VERSION     XP_053912061.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056086.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..473
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..473
                     /product="cystine/glutamate transporter"
                     /calculated_mol_wt=52619
     Region          8..469
                     /region_name="2A0308"
                     /note="L-type amino acid transporter; TIGR00911"
                     /db_xref="CDD:273332"
     CDS             1..473
                     /gene="LOC104058938"
                     /coded_by="XM_054056086.1:2131..3552"
                     /db_xref="GeneID:104058938"
ORIGIN      
        1 mgkdkkdeav flrkkitllr afslligsmv gsgifispkg vlknsgsvgf slvvwfacgl
       61 lsmfgalcya elgtritksg ghyiyiletl gplpgflflw aeffairpan savvslafgr
      121 ymlepffapc aapvpavklv sllgyytvlt lnswsvtwsa rlqtalsivk llalaliivp
      181 gmmllaqght enfqdafdrq slvldklpla fyagmfaysg wfqtsfvree lvrpernipl
      241 avivsvitvi vgymltnvsy ytvlgkqdvl aspavavsfv qrafkslisv vpvlvalscf
      301 gtmnggiftf srtlfvasre gqwpplfsmi hirrhtplpa vmlmfplvta mvcigdiyhl
      361 lnffsfsrwl figlatlgli vhryrhpelh spfkvplfvp vsftiiclft vamsfysdpv
      421 nisigctmvl sgfpvyylii hrqmsnrccr pfyylthklq lllevvqqev kty
//
LOCUS       XP_053912062             358 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Wnt-7b isoform X1 [Cuculus canorus].
ACCESSION   XP_053912062
VERSION     XP_053912062.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056087.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..358
                     /product="protein Wnt-7b isoform X1"
                     /calculated_mol_wt=39781
     Region          41..358
                     /region_name="wnt_Wnt7b"
                     /note="Wnt domain found in protein Wnt-7b and similar
                     proteins; cd19350"
                     /db_xref="CDD:381724"
     Site            order(210..211,214..216,224,337,339,341,343)
                     /site_type="other"
                     /note="Frizzled receptor binding site [polypeptide
                     binding]"
                     /db_xref="CDD:381724"
     CDS             1..358
                     /gene="WNT7B"
                     /coded_by="XM_054056087.1:118..1194"
                     /db_xref="GeneID:104062821"
ORIGIN      
        1 mpqpsarprs pgcfrsggis spavragsrt fslalssvva lganiicnki pglaprqrai
       61 cqsrpdaiiv igegaqmgin ecqyqfrygr wncsalgekt vfgqelrvgs reaaftyait
      121 aagvahavta acsqgnlsnc gcdrekqgyy nqeegwkwgg csadirygie fsrrfvdare
      181 ikknarrlmn lhnneagrkv leermkleck chgvsgsctt ktcwttlpkf reigyilkek
      241 ynaavqvevv rasrlrqptf lkikqiksyq kpmetdlvyi ekspnyceed astgsvgtqg
      301 rlcnrtspna dgcdmmccgr gynthqytkv wqcnckfhwc cfvkcntcse rtevftck
//
LOCUS       XP_009563234             353 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Wnt-7b isoform X2 [Cuculus canorus].
ACCESSION   XP_009563234
VERSION     XP_009563234.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009564939.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..353
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..353
                     /product="protein Wnt-7b isoform X2"
                     /calculated_mol_wt=39574
     Region          36..353
                     /region_name="wnt_Wnt7b"
                     /note="Wnt domain found in protein Wnt-7b and similar
                     proteins; cd19350"
                     /db_xref="CDD:381724"
     Site            order(205..206,209..211,219,332,334,336,338)
                     /site_type="other"
                     /note="Frizzled receptor binding site [polypeptide
                     binding]"
                     /db_xref="CDD:381724"
     CDS             1..353
                     /gene="WNT7B"
                     /coded_by="XM_009564939.2:42..1103"
                     /db_xref="GeneID:104062821"
ORIGIN      
        1 milfssrsvl lsvyypqifl iltsgsylal ssvvalgani icnkipglap rqraicqsrp
       61 daiivigega qmginecqyq frygrwncsa lgektvfgqe lrvgsreaaf tyaitaagva
      121 havtaacsqg nlsncgcdre kqgyynqeeg wkwggcsadi rygiefsrrf vdareikkna
      181 rrlmnlhnne agrkvleerm kleckchgvs gscttktcwt tlpkfreigy ilkekynaav
      241 qvevvrasrl rqptflkikq iksyqkpmet dlvyiekspn yceedastgs vgtqgrlcnr
      301 tspnadgcdm mccgrgynth qytkvwqcnc kfhwccfvkc ntcsertevf tck
//
LOCUS       XP_009563236             349 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Wnt-7b isoform X3 [Cuculus canorus].
ACCESSION   XP_009563236
VERSION     XP_009563236.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009564941.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..349
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..349
                     /product="protein Wnt-7b isoform X3"
                     /calculated_mol_wt=39400
     Region          32..349
                     /region_name="wnt_Wnt7b"
                     /note="Wnt domain found in protein Wnt-7b and similar
                     proteins; cd19350"
                     /db_xref="CDD:381724"
     Site            order(201..202,205..207,215,328,330,332,334)
                     /site_type="other"
                     /note="Frizzled receptor binding site [polypeptide
                     binding]"
                     /db_xref="CDD:381724"
     CDS             1..349
                     /gene="WNT7B"
                     /coded_by="XM_009564941.2:341..1390"
                     /db_xref="GeneID:104062821"
ORIGIN      
        1 mhrnfrkwif yvflcfgviy vklgalssvv alganiicnk ipglaprqra icqsrpdaii
       61 vigegaqmgi necqyqfryg rwncsalgek tvfgqelrvg sreaaftyai taagvahavt
      121 aacsqgnlsn cgcdrekqgy ynqeegwkwg gcsadirygi efsrrfvdar eikknarrlm
      181 nlhnneagrk vleermklec kchgvsgsct tktcwttlpk freigyilke kynaavqvev
      241 vrasrlrqpt flkikqiksy qkpmetdlvy iekspnycee dastgsvgtq grlcnrtspn
      301 adgcdmmccg rgynthqytk vwqcnckfhw ccfvkcntcs ertevftck
//
LOCUS       XP_053912063             282 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Wnt-7b isoform X4 [Cuculus canorus].
ACCESSION   XP_053912063
VERSION     XP_053912063.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056088.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..282
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..282
                     /product="protein Wnt-7b isoform X4"
                     /calculated_mol_wt=32013
     Region          1..282
                     /region_name="Wnt"
                     /note="Wnt domain found in the WNT signaling gene family,
                     also called Wingless-type mouse mammary tumor virus (MMTV)
                     integration site family; cl38924"
                     /db_xref="CDD:393294"
     Site            order(134..135,138..140,148,261,263,265,267)
                     /site_type="other"
                     /note="Frizzled receptor binding site [polypeptide
                     binding]"
                     /db_xref="CDD:381706"
     CDS             1..282
                     /gene="WNT7B"
                     /coded_by="XM_054056088.1:704..1552"
                     /db_xref="GeneID:104062821"
ORIGIN      
        1 mginecqyqf rygrwncsal gektvfgqel rvgsreaaft yaitaagvah avtaacsqgn
       61 lsncgcdrek qgyynqeegw kwggcsadir ygiefsrrfv dareikknar rlmnlhnnea
      121 grkvleermk leckchgvsg scttktcwtt lpkfreigyi lkekynaavq vevvrasrlr
      181 qptflkikqi ksyqkpmetd lvyiekspny ceedastgsv gtqgrlcnrt spnadgcdmm
      241 ccgrgynthq ytkvwqcnck fhwccfvkcn tcsertevft ck
//
LOCUS       XP_053912064             282 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Wnt-7b isoform X4 [Cuculus canorus].
ACCESSION   XP_053912064
VERSION     XP_053912064.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056089.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..282
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..282
                     /product="protein Wnt-7b isoform X4"
                     /calculated_mol_wt=32013
     Region          1..282
                     /region_name="Wnt"
                     /note="Wnt domain found in the WNT signaling gene family,
                     also called Wingless-type mouse mammary tumor virus (MMTV)
                     integration site family; cl38924"
                     /db_xref="CDD:393294"
     Site            order(134..135,138..140,148,261,263,265,267)
                     /site_type="other"
                     /note="Frizzled receptor binding site [polypeptide
                     binding]"
                     /db_xref="CDD:381706"
     CDS             1..282
                     /gene="WNT7B"
                     /coded_by="XM_054056089.1:269..1117"
                     /db_xref="GeneID:104062821"
ORIGIN      
        1 mginecqyqf rygrwncsal gektvfgqel rvgsreaaft yaitaagvah avtaacsqgn
       61 lsncgcdrek qgyynqeegw kwggcsadir ygiefsrrfv dareikknar rlmnlhnnea
      121 grkvleermk leckchgvsg scttktcwtt lpkfreigyi lkekynaavq vevvrasrlr
      181 qptflkikqi ksyqkpmetd lvyiekspny ceedastgsv gtqgrlcnrt spnadgcdmm
      241 ccgrgynthq ytkvwqcnck fhwccfvkcn tcsertevft ck
//
LOCUS       XP_053912065             282 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Wnt-7b isoform X4 [Cuculus canorus].
ACCESSION   XP_053912065
VERSION     XP_053912065.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056090.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..282
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..282
                     /product="protein Wnt-7b isoform X4"
                     /calculated_mol_wt=32013
     Region          1..282
                     /region_name="Wnt"
                     /note="Wnt domain found in the WNT signaling gene family,
                     also called Wingless-type mouse mammary tumor virus (MMTV)
                     integration site family; cl38924"
                     /db_xref="CDD:393294"
     Site            order(134..135,138..140,148,261,263,265,267)
                     /site_type="other"
                     /note="Frizzled receptor binding site [polypeptide
                     binding]"
                     /db_xref="CDD:381706"
     CDS             1..282
                     /gene="WNT7B"
                     /coded_by="XM_054056090.1:331..1179"
                     /db_xref="GeneID:104062821"
ORIGIN      
        1 mginecqyqf rygrwncsal gektvfgqel rvgsreaaft yaitaagvah avtaacsqgn
       61 lsncgcdrek qgyynqeegw kwggcsadir ygiefsrrfv dareikknar rlmnlhnnea
      121 grkvleermk leckchgvsg scttktcwtt lpkfreigyi lkekynaavq vevvrasrlr
      181 qptflkikqi ksyqkpmetd lvyiekspny ceedastgsv gtqgrlcnrt spnadgcdmm
      241 ccgrgynthq ytkvwqcnck fhwccfvkcn tcsertevft ck
//
LOCUS       XP_053912066             291 aa            linear   VRT 09-MAR-2023
DEFINITION  enoyl-CoA hydratase domain-containing protein 3, mitochondrial
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053912066
VERSION     XP_053912066.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056091.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..291
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..291
                     /product="enoyl-CoA hydratase domain-containing protein 3,
                     mitochondrial isoform X1"
                     /calculated_mol_wt=31487
     Region          30..282
                     /region_name="crotonase-like"
                     /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase
                     superfamily. This superfamily contains a diverse set of
                     enzymes including enoyl-CoA hydratase, napthoate synthase,
                     methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA
                     dehydratase, and dienoyl-CoA isomerase; cl23717"
                     /db_xref="CDD:474030"
     Site            order(50,52,84,88..92,132,134..136,158..159,162)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:119339"
     Site            order(90,136)
                     /site_type="active"
                     /note="oxyanion hole (OAH) forming residues [active]"
                     /db_xref="CDD:119339"
     Site            order(116,124,145..148,160..163,169,171..172,174..175,
                     180..181,183..184,186..187,190,201,204,219,222..223)
                     /site_type="other"
                     /note="trimer interface [polypeptide binding]"
                     /db_xref="CDD:119339"
     CDS             1..291
                     /gene="ECHDC3"
                     /coded_by="XM_054056091.1:29..904"
                     /db_xref="GeneID:104066486"
ORIGIN      
        1 mavalgllra lpgpaltrga aaiaagrerl tvrrqeggvr divlnnpkrr nalslamlqs
       61 lredllhdvk skelrviiis aegpvfcsgh dlkelssedd vkhhsqvfei caevmtliqk
      121 lpvpviakvn glataagcql vascdiavas eksqfatpgv niglfcstpa valgrslprk
      181 valemlftge plsaqealmh glvskvvped kleeettkis qkicessksi lalgkatfyr
      241 qitqdldtay rmttqvmvdn lnlrdgqegi eafiqkrkpv wshlssqdek k
//
LOCUS       XP_053912067             235 aa            linear   VRT 09-MAR-2023
DEFINITION  enoyl-CoA hydratase domain-containing protein 3, mitochondrial
            isoform X2 [Cuculus canorus].
ACCESSION   XP_053912067
VERSION     XP_053912067.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056092.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..235
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..235
                     /product="enoyl-CoA hydratase domain-containing protein 3,
                     mitochondrial isoform X2"
                     /calculated_mol_wt=25632
     Region          1..226
                     /region_name="crotonase-like"
                     /note="Crotonase/Enoyl-Coenzyme A (CoA) hydratase
                     superfamily. This superfamily contains a diverse set of
                     enzymes including enoyl-CoA hydratase, napthoate synthase,
                     methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA
                     dehydratase, and dienoyl-CoA isomerase; cl23717"
                     /db_xref="CDD:474030"
     Site            order(28,32..36,76,78..80,102..103,106)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:119339"
     Site            order(34,80)
                     /site_type="active"
                     /note="oxyanion hole (OAH) forming residues [active]"
                     /db_xref="CDD:119339"
     Site            order(60,68,89..92,104..107,113,115..116,118..119,
                     124..125,127..128,130..131,134,145,148,163,166..167)
                     /site_type="other"
                     /note="trimer interface [polypeptide binding]"
                     /db_xref="CDD:119339"
     CDS             1..235
                     /gene="ECHDC3"
                     /coded_by="XM_054056092.1:429..1136"
                     /db_xref="GeneID:104066486"
ORIGIN      
        1 mlqslredll hdvkskelrv iiisaegpvf csghdlkels seddvkhhsq vfeicaevmt
       61 liqklpvpvi akvnglataa gcqlvascdi avaseksqfa tpgvniglfc stpavalgrs
      121 lprkvaleml ftgeplsaqe almhglvskv vpedkleeet tkisqkices sksilalgka
      181 tfyrqitqdl dtayrmttqv mvdnlnlrdg qegieafiqk rkpvwshlss qdekk
//
LOCUS       XP_053912068             192 aa            linear   VRT 09-MAR-2023
DEFINITION  intraflagellar transport protein 27 homolog isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912068
VERSION     XP_053912068.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056093.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..192
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..192
                     /product="intraflagellar transport protein 27 homolog
                     isoform X1"
                     /calculated_mol_wt=21579
     Region          6..172
                     /region_name="P-loop containing Nucleoside Triphosphate
                     Hydrolases"
                     /note="Members of the P-loop NTPase domain superfamily are
                     characterized by a conserved nucleotide phosphate-binding
                     motif, also referred to as the Walker A motif
                     (GxxxxGK[S/T], where x is any residue), and the Walker B
                     motif (hhhh[D/E], where h is a...; cl38936"
                     /db_xref="CDD:476819"
     Site            12..19
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206648"
     Site            order(14..20,67,123..124,126,153..155)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206648"
     Site            39
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206648"
     Site            43..45
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206648"
     Site            64..67
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206648"
     Site            order(66..67,83..84)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206648"
     Site            123..126
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206648"
     Site            153..155
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206648"
     CDS             1..192
                     /gene="IFT27"
                     /coded_by="XM_054056093.1:125..703"
                     /db_xref="GeneID:104065856"
ORIGIN      
        1 mvklaakcvl agdpavgksa laqmfcsdga hfrknytltt gidllvkavs vpetsdsvef
       61 yifdsagkdl fsemleklwe qpnilclvyd vtneqsfnnc akwleklraq avgvhipgvl
      121 vgnktdlvsr rvveqkqaqe waekhgleyc evsvkemknf etpfhvlaks fhqlykekve
      181 tfhilawrpt ll
//
LOCUS       XP_053912069             205 aa            linear   VRT 09-MAR-2023
DEFINITION  intraflagellar transport protein 27 homolog isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912069
VERSION     XP_053912069.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056094.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..205
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..205
                     /product="intraflagellar transport protein 27 homolog
                     isoform X2"
                     /calculated_mol_wt=23116
     Region          6..185
                     /region_name="P-loop containing Nucleoside Triphosphate
                     Hydrolases"
                     /note="Members of the P-loop NTPase domain superfamily are
                     characterized by a conserved nucleotide phosphate-binding
                     motif, also referred to as the Walker A motif
                     (GxxxxGK[S/T], where x is any residue), and the Walker B
                     motif (hhhh[D/E], where h is a...; cl38936"
                     /db_xref="CDD:476819"
     Site            12..19
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206648"
     Site            order(14..20,80,136..137,139,166..168)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206648"
     Site            39
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206648"
     Site            43..45
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206648"
     Site            77..80
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206648"
     Site            order(79..80,96..97)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206648"
     Site            136..139
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206648"
     Site            166..168
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206648"
     CDS             1..205
                     /gene="IFT27"
                     /coded_by="XM_054056094.1:138..755"
                     /db_xref="GeneID:104065856"
ORIGIN      
        1 mvklaakcvl agdpavgksa laqmfcsdga hfrknytltt gidllvkavs vpetsdsvvs
       61 fsslsfcfrf qefyifdsag kdlfsemlek lweqpnilcl vydvtneqsf nncakwlekl
      121 raqavgvhip gvlvgnktdl vsrrvveqkq aqewaekhgl eycevsvkem knfetpfhvl
      181 aksfhqlyke kvetfhilaw rptll
//
LOCUS       XP_009555254             546 aa            linear   VRT 09-MAR-2023
DEFINITION  G-protein coupled receptor 161 isoform X1 [Cuculus canorus].
ACCESSION   XP_009555254
VERSION     XP_009555254.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556959.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..546
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..546
                     /product="G-protein coupled receptor 161 isoform X1"
                     /calculated_mol_wt=60441
     Region          52..358
                     /region_name="7tmA_GPR161"
                     /note="orphan G protein-coupled receptor 161, member of
                     the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15214"
                     /db_xref="CDD:320342"
     Region          52..78
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320342"
     Region          85..110
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320342"
     Site            order(107,110..111,123..128,130..131,134,179,181..185,208,
                     211..213,215..217,219..220,306,309..310,312..313,316,
                     325..326,328..330,333,336..337)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320342"
     Region          123..153
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320342"
     Region          165..187
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320342"
     Region          208..237
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320342"
     Region          286..316
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320342"
     Region          326..351
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320342"
     CDS             1..546
                     /gene="GPR161"
                     /coded_by="XM_009556959.2:64..1704"
                     /db_xref="GeneID:104055781"
ORIGIN      
        1 mflsivllla aqhvlatval haltmsssns slsnvkdlkn lttqedeair vtesiaiivi
       61 aificlgnlv ivvtlyrksy lltlsnkfvf sltlsnflls vlvlpfvvts sirrewifgv
      121 vwcnfsally mlissasmlt lgliaidryy avlypmvypm kitgnravva lvyvwlhsli
      181 gclpplfgws slefdqfkwm cvaawhkevg ytafwqiwca flpfvvmmvc ygfifrvari
      241 karkihcgsv viveedsqrn grknsststs ssgsrrnafq gvvysanqck alitilvvig
      301 afvitwgpym vvitsealwg knsispalet latwlsfssa ichpliyglw nktvrkellg
      361 mcfgdryyre sfvqrhrtsr lfsisnritd lglsphltal maggrplgns sstgdtgfsc
      421 sqdsgtdtml ledyssdgph vphcicpprr rssvtfedev eqikeaakns vlhvkaevhk
      481 sldsyassla raieadvkis lfgesalpga lfpvrtlpgs smntrrgirp hasqrlqlqs
      541 idegni
//
LOCUS       XP_053912070             522 aa            linear   VRT 09-MAR-2023
DEFINITION  G-protein coupled receptor 161 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912070
VERSION     XP_053912070.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056095.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..522
                     /product="G-protein coupled receptor 161 isoform X2"
                     /calculated_mol_wt=57913
     Region          28..334
                     /region_name="7tmA_GPR161"
                     /note="orphan G protein-coupled receptor 161, member of
                     the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15214"
                     /db_xref="CDD:320342"
     Region          28..54
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320342"
     Region          61..86
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320342"
     Site            order(83,86..87,99..104,106..107,110,155,157..161,184,
                     187..189,191..193,195..196,282,285..286,288..289,292,
                     301..302,304..306,309,312..313)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320342"
     Region          99..129
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320342"
     Region          141..163
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320342"
     Region          184..213
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320342"
     Region          262..292
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320342"
     Region          302..327
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320342"
     CDS             1..522
                     /gene="GPR161"
                     /coded_by="XM_054056095.1:372..1940"
                     /db_xref="GeneID:104055781"
ORIGIN      
        1 msssnsslsn vkdlknlttq edeairvtes iaiiviaifi clgnlvivvt lyrksylltl
       61 snkfvfsltl snfllsvlvl pfvvtssirr ewifgvvwcn fsallymlis sasmltlgli
      121 aidryyavly pmvypmkitg nravvalvyv wlhsligclp plfgwsslef dqfkwmcvaa
      181 whkevgytaf wqiwcaflpf vvmmvcygfi frvarikark ihcgsvvive edsqrngrkn
      241 sststsssgs rrnafqgvvy sanqckalit ilvvigafvi twgpymvvit sealwgknsi
      301 spaletlatw lsfssaichp liyglwnktv rkellgmcfg dryyresfvq rhrtsrlfsi
      361 snritdlgls phltalmagg rplgnssstg dtgfscsqds gtdtmlledy ssdgphvphc
      421 icpprrrssv tfedeveqik eaaknsvlhv kaevhkslds yasslaraie advkislfge
      481 salpgalfpv rtlpgssmnt rrgirphasq rlqlqsideg ni
//
LOCUS       XP_053912071             522 aa            linear   VRT 09-MAR-2023
DEFINITION  G-protein coupled receptor 161 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912071
VERSION     XP_053912071.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056096.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..522
                     /product="G-protein coupled receptor 161 isoform X2"
                     /calculated_mol_wt=57913
     Region          28..334
                     /region_name="7tmA_GPR161"
                     /note="orphan G protein-coupled receptor 161, member of
                     the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15214"
                     /db_xref="CDD:320342"
     Region          28..54
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320342"
     Region          61..86
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320342"
     Site            order(83,86..87,99..104,106..107,110,155,157..161,184,
                     187..189,191..193,195..196,282,285..286,288..289,292,
                     301..302,304..306,309,312..313)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320342"
     Region          99..129
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320342"
     Region          141..163
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320342"
     Region          184..213
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320342"
     Region          262..292
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320342"
     Region          302..327
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320342"
     CDS             1..522
                     /gene="GPR161"
                     /coded_by="XM_054056096.1:346..1914"
                     /db_xref="GeneID:104055781"
ORIGIN      
        1 msssnsslsn vkdlknlttq edeairvtes iaiiviaifi clgnlvivvt lyrksylltl
       61 snkfvfsltl snfllsvlvl pfvvtssirr ewifgvvwcn fsallymlis sasmltlgli
      121 aidryyavly pmvypmkitg nravvalvyv wlhsligclp plfgwsslef dqfkwmcvaa
      181 whkevgytaf wqiwcaflpf vvmmvcygfi frvarikark ihcgsvvive edsqrngrkn
      241 sststsssgs rrnafqgvvy sanqckalit ilvvigafvi twgpymvvit sealwgknsi
      301 spaletlatw lsfssaichp liyglwnktv rkellgmcfg dryyresfvq rhrtsrlfsi
      361 snritdlgls phltalmagg rplgnssstg dtgfscsqds gtdtmlledy ssdgphvphc
      421 icpprrrssv tfedeveqik eaaknsvlhv kaevhkslds yasslaraie advkislfge
      481 salpgalfpv rtlpgssmnt rrgirphasq rlqlqsideg ni
//
LOCUS       XP_053912072             522 aa            linear   VRT 09-MAR-2023
DEFINITION  G-protein coupled receptor 161 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912072
VERSION     XP_053912072.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056097.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..522
                     /product="G-protein coupled receptor 161 isoform X2"
                     /calculated_mol_wt=57913
     Region          28..334
                     /region_name="7tmA_GPR161"
                     /note="orphan G protein-coupled receptor 161, member of
                     the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15214"
                     /db_xref="CDD:320342"
     Region          28..54
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320342"
     Region          61..86
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320342"
     Site            order(83,86..87,99..104,106..107,110,155,157..161,184,
                     187..189,191..193,195..196,282,285..286,288..289,292,
                     301..302,304..306,309,312..313)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320342"
     Region          99..129
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320342"
     Region          141..163
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320342"
     Region          184..213
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320342"
     Region          262..292
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320342"
     Region          302..327
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320342"
     CDS             1..522
                     /gene="GPR161"
                     /coded_by="XM_054056097.1:429..1997"
                     /db_xref="GeneID:104055781"
ORIGIN      
        1 msssnsslsn vkdlknlttq edeairvtes iaiiviaifi clgnlvivvt lyrksylltl
       61 snkfvfsltl snfllsvlvl pfvvtssirr ewifgvvwcn fsallymlis sasmltlgli
      121 aidryyavly pmvypmkitg nravvalvyv wlhsligclp plfgwsslef dqfkwmcvaa
      181 whkevgytaf wqiwcaflpf vvmmvcygfi frvarikark ihcgsvvive edsqrngrkn
      241 sststsssgs rrnafqgvvy sanqckalit ilvvigafvi twgpymvvit sealwgknsi
      301 spaletlatw lsfssaichp liyglwnktv rkellgmcfg dryyresfvq rhrtsrlfsi
      361 snritdlgls phltalmagg rplgnssstg dtgfscsqds gtdtmlledy ssdgphvphc
      421 icpprrrssv tfedeveqik eaaknsvlhv kaevhkslds yasslaraie advkislfge
      481 salpgalfpv rtlpgssmnt rrgirphasq rlqlqsideg ni
//
LOCUS       XP_053912073             522 aa            linear   VRT 09-MAR-2023
DEFINITION  G-protein coupled receptor 161 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912073
VERSION     XP_053912073.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056098.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..522
                     /product="G-protein coupled receptor 161 isoform X2"
                     /calculated_mol_wt=57913
     Region          28..334
                     /region_name="7tmA_GPR161"
                     /note="orphan G protein-coupled receptor 161, member of
                     the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15214"
                     /db_xref="CDD:320342"
     Region          28..54
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320342"
     Region          61..86
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320342"
     Site            order(83,86..87,99..104,106..107,110,155,157..161,184,
                     187..189,191..193,195..196,282,285..286,288..289,292,
                     301..302,304..306,309,312..313)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320342"
     Region          99..129
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320342"
     Region          141..163
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320342"
     Region          184..213
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320342"
     Region          262..292
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320342"
     Region          302..327
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320342"
     CDS             1..522
                     /gene="GPR161"
                     /coded_by="XM_054056098.1:403..1971"
                     /db_xref="GeneID:104055781"
ORIGIN      
        1 msssnsslsn vkdlknlttq edeairvtes iaiiviaifi clgnlvivvt lyrksylltl
       61 snkfvfsltl snfllsvlvl pfvvtssirr ewifgvvwcn fsallymlis sasmltlgli
      121 aidryyavly pmvypmkitg nravvalvyv wlhsligclp plfgwsslef dqfkwmcvaa
      181 whkevgytaf wqiwcaflpf vvmmvcygfi frvarikark ihcgsvvive edsqrngrkn
      241 sststsssgs rrnafqgvvy sanqckalit ilvvigafvi twgpymvvit sealwgknsi
      301 spaletlatw lsfssaichp liyglwnktv rkellgmcfg dryyresfvq rhrtsrlfsi
      361 snritdlgls phltalmagg rplgnssstg dtgfscsqds gtdtmlledy ssdgphvphc
      421 icpprrrssv tfedeveqik eaaknsvlhv kaevhkslds yasslaraie advkislfge
      481 salpgalfpv rtlpgssmnt rrgirphasq rlqlqsideg ni
//
LOCUS       XP_009555119             601 aa            linear   VRT 09-MAR-2023
DEFINITION  T-box transcription factor TBX15 [Cuculus canorus].
ACCESSION   XP_009555119
VERSION     XP_009555119.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556824.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555119.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..601
                     /product="T-box transcription factor TBX15"
                     /calculated_mol_wt=65742
     Region          110..303
                     /region_name="T-box_TBX15_18_22-like"
                     /note="DNA-binding domain of T-box transcription factor
                     15, 18 and 22, and related T-box proteins; cd20191"
                     /db_xref="CDD:410317"
     Site            order(139..140,173,219,222,235..236,280..283,288,291..292,
                     295..301)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410317"
     CDS             1..601
                     /gene="TBX15"
                     /coded_by="XM_009556824.2:227..2032"
                     /db_xref="GeneID:104055664"
ORIGIN      
        1 mserrrsava lssrahafsv ealigtnkkr klrdwedkgl dlsmeslspn gqlgdnedpt
       61 qcldlnpdse qstgsdtevl aertscsfgs hsdlassgsg pqppppssme eiqvelqcad
      121 lwkrfhdigt emiitkagrr mfpamrvkit gldphqqyyi amdivpvdnk ryryvyhssk
      181 wmvagnadsp vpprvyihpd slasgdtwmr qvvsfdklkl tnnelddqgh iilhsmhkyq
      241 prvhvirkdf ssdlsptkpv psgdgvktfn fpetvfttvt ayqnqqitrl kidrnpfakg
      301 frdsgrnrtg leaimetyaf wrppvrtltf edfttmqkqq ggstgtsptt sstgtpspsa
      361 sshllspscs ppafhlapnt fnvgcresql cnlnlsdypp carsnmaalq sypglsdgsy
      421 nrlqsstasa sqpsetfmpq rtpslisgmp apsslptnsk mepyssqlgs fsssqfqyvm
      481 qagnpastss sshmfggghm qqssynafsl hnpynlygyn fpasprlaas peklttsqst
      541 llcsspssga fgerqylstg mdhgmhmisp psgnqqtant cdnrqygavq gsssqmsvhm
      601 v
//
LOCUS       XP_053912074             242 aa            linear   VRT 09-MAR-2023
DEFINITION  calcium-activated potassium channel subunit beta-4 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053912074
VERSION     XP_053912074.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056099.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..242
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..242
                     /product="calcium-activated potassium channel subunit
                     beta-4 isoform X1"
                     /calculated_mol_wt=26790
     Region          8..235
                     /region_name="CaKB"
                     /note="Calcium-activated potassium channel, beta subunit;
                     pfam03185"
                     /db_xref="CDD:460838"
     CDS             1..242
                     /gene="KCNMB4"
                     /coded_by="XM_054056099.1:82..810"
                     /db_xref="GeneID:104063986"
ORIGIN      
        1 marsrpvyey teaedksmrl gflliaagll sllglgccwl rpalqerggg gsanctvlav
       61 rqlgerfact fscgaacrgt arypclqvlv rtsrssvpal lhederqlrt npksgggvgp
      121 lcvppaasgh ewearekllm parkcsyipp carddqense nvtykqkywk ekvgsqpftc
      181 yfnqhlrpdd vmlrrthdet vllhcflwpl vtflvgvliv vlticaksla vraeaikkkk
      241 hl
//
LOCUS       XP_053912075             211 aa            linear   VRT 09-MAR-2023
DEFINITION  calcium-activated potassium channel subunit beta-4 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053912075
VERSION     XP_053912075.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056100.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..211
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..211
                     /product="calcium-activated potassium channel subunit
                     beta-4 isoform X2"
                     /calculated_mol_wt=23607
     Region          8..204
                     /region_name="CaKB"
                     /note="Calcium-activated potassium channel, beta subunit;
                     pfam03185"
                     /db_xref="CDD:460838"
     CDS             1..211
                     /gene="KCNMB4"
                     /coded_by="XM_054056100.1:82..717"
                     /db_xref="GeneID:104063986"
ORIGIN      
        1 marsrpvyey teaedksmrl gflliaagll sllglgccwl rpalqerggg gsanctvlav
       61 rqlgerfact fscgaacrgt arypclqvlv rtsrssvpal lhederqlrt npkcsyippc
      121 arddqensen vtykqkywke kvgsqpftcy fnqhlrpddv mlrrthdetv llhcflwplv
      181 tflvgvlivv lticakslav raeaikkkkh l
//
LOCUS       XP_053912076            1043 aa            linear   VRT 09-MAR-2023
DEFINITION  FERM, ARHGEF and pleckstrin domain-containing protein 1 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053912076
VERSION     XP_053912076.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056101.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1043
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1043
                     /product="FERM, ARHGEF and pleckstrin domain-containing
                     protein 1 isoform X1"
                     /calculated_mol_wt=119301
     Region          42..230
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Region          217..337
                     /region_name="FERM_C_FARP1-like"
                     /note="FERM domain C-lobe of FERM, RhoGEF and pleckstrin
                     domain-containing protein 1 and related proteins; cd13193"
                     /db_xref="CDD:270014"
     Site            order(234,251,253,259)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:270014"
     Site            order(263,268..271,306,310,313..314)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270014"
     Site            306..317
                     /site_type="other"
                     /note="putative actin binding site 2 [polypeptide
                     binding]"
                     /db_xref="CDD:270014"
     Region          329..372
                     /region_name="FA"
                     /note="FERM adjacent (FA); pfam08736"
                     /db_xref="CDD:462582"
     Region          540..727
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(545,549,651,678..679,682..683,685..686,689..690,
                     693..694,697,723,727)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          752..860
                     /region_name="PH1_FARP1-like"
                     /note="FERM, RhoGEF and pleckstrin domain-containing
                     protein 1 and related proteins Pleckstrin Homology (PH)
                     domain, repeat 1; cd01220"
                     /db_xref="CDD:269928"
     Region          929..1026
                     /region_name="PH2_FARP1-like"
                     /note="FERM, RhoGEF and pleckstrin domain-containing
                     protein 1 and related proteins Pleckstrin Homology (PH)
                     domain, repeat 2; cd13235"
                     /db_xref="CDD:270055"
     CDS             1..1043
                     /gene="FARP1"
                     /coded_by="XM_054056101.1:349..3480"
                     /db_xref="GeneID:104057295"
ORIGIN      
        1 mgeteqrpta gsrlgaqena gistlehgqk ppvtppgkli sikiqmlddt qetfdvpqra
       61 pgkvlhdavc nhlnlvegdy fglefpdhkk mmvwldllkp vikqirrpkh vvvkfvvkff
      121 ppdhaqlqee ltrylfalqv kqdlaqgrlt cndtstalli shivqseigd fdetidrehl
      181 aknkyipqqe aledkimefh rnhmgqtpae sdfqlleiar rlemygirlh pakdregtki
      241 nlavantgil vfqghtkina fnwakvrkls fkrkrflikl rpdvnssfqd tleflmasrd
      301 fcksfwkicv ehhaffrlfe epkpkpkpvl fsrgssfrfs grtqkqvldy vkegghkkvq
      361 ferkhskihs irsltaqtse qhtevpkqss sfaygddnda aavqscrqgk elkvstedvg
      421 qhkspslkks pkegrkvdga vvstveeeee aakdrmqqnr pqsqqpstag sltgsphlse
      481 lsinsqggps vanmslspnl spdakqsspl ispllndpsc irtddeeevk kkrfptekay
      541 fiakevatte rtylkdlevi tswfqsavsk edcmpetlkn lifsnfeplh kfhtgflkei
      601 eqrlalwegr snahikgdyq rigdvmlkni qsmkqltihl wkhneilmel engiknsrkl
      661 enfcrdfelq kvcylplntf llrplhrlmh ykqimerlck hyppshmdfr dsraalaeis
      721 emvaqlhgnm ikmenfqklh elkkdligid nlvipgrefi rlgslsklsg kglqqrmffl
      781 fndillytsr gltasnqfkv hghlplygmt ieeseeewgv phcltlrgqh qsivvaastr
      841 aemdkwtedv qmaidlaeks tgpapellas sppdnkspde ttvdqesedd lsasrtsler
      901 qsphrgnttv hvcwhrntsv smidfsiave nqlsgnllrk fknsngwqkl wvvftnfcmf
      961 fykshqdnhp laslpllgys ltipseseni hkdyvfklhf kshmyyfrae seytferwme
     1021 virsatssas rtralshkep hay
//
LOCUS       XP_053912078            1042 aa            linear   VRT 09-MAR-2023
DEFINITION  FERM, ARHGEF and pleckstrin domain-containing protein 1 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053912078
VERSION     XP_053912078.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056103.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1042
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1042
                     /product="FERM, ARHGEF and pleckstrin domain-containing
                     protein 1 isoform X2"
                     /calculated_mol_wt=119230
     Region          42..230
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Region          217..337
                     /region_name="FERM_C_FARP1-like"
                     /note="FERM domain C-lobe of FERM, RhoGEF and pleckstrin
                     domain-containing protein 1 and related proteins; cd13193"
                     /db_xref="CDD:270014"
     Site            order(234,251,253,259)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:270014"
     Site            order(263,268..271,306,310,313..314)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270014"
     Site            306..317
                     /site_type="other"
                     /note="putative actin binding site 2 [polypeptide
                     binding]"
                     /db_xref="CDD:270014"
     Region          329..372
                     /region_name="FA"
                     /note="FERM adjacent (FA); pfam08736"
                     /db_xref="CDD:462582"
     Region          539..726
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(544,548,650,677..678,681..682,684..685,688..689,
                     692..693,696,722,726)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          751..859
                     /region_name="PH1_FARP1-like"
                     /note="FERM, RhoGEF and pleckstrin domain-containing
                     protein 1 and related proteins Pleckstrin Homology (PH)
                     domain, repeat 1; cd01220"
                     /db_xref="CDD:269928"
     Region          928..1025
                     /region_name="PH2_FARP1-like"
                     /note="FERM, RhoGEF and pleckstrin domain-containing
                     protein 1 and related proteins Pleckstrin Homology (PH)
                     domain, repeat 2; cd13235"
                     /db_xref="CDD:270055"
     CDS             1..1042
                     /gene="FARP1"
                     /coded_by="XM_054056103.1:349..3477"
                     /db_xref="GeneID:104057295"
ORIGIN      
        1 mgeteqrpta gsrlgaqena gistlehgqk ppvtppgkli sikiqmlddt qetfdvpqra
       61 pgkvlhdavc nhlnlvegdy fglefpdhkk mmvwldllkp vikqirrpkh vvvkfvvkff
      121 ppdhaqlqee ltrylfalqv kqdlaqgrlt cndtstalli shivqseigd fdetidrehl
      181 aknkyipqqe aledkimefh rnhmgqtpae sdfqlleiar rlemygirlh pakdregtki
      241 nlavantgil vfqghtkina fnwakvrkls fkrkrflikl rpdvnssfqd tleflmasrd
      301 fcksfwkicv ehhaffrlfe epkpkpkpvl fsrgssfrfs grtqkqvldy vkegghkkvq
      361 ferkhskihs irsltaqtse qhtevpkqss sfaygddnda aavqscrqgk elkvstedvg
      421 qhkspslkks pkegrkvdga vvstveeeee aakdrmqqnr pqsqqpstgs ltgsphlsel
      481 sinsqggpsv anmslspnls pdakqsspli spllndpsci rtddeeevkk krfptekayf
      541 iakevatter tylkdlevit swfqsavske dcmpetlknl ifsnfeplhk fhtgflkeie
      601 qrlalwegrs nahikgdyqr igdvmlkniq smkqltihlw khneilmele ngiknsrkle
      661 nfcrdfelqk vcylplntfl lrplhrlmhy kqimerlckh yppshmdfrd sraalaeise
      721 mvaqlhgnmi kmenfqklhe lkkdligidn lvipgrefir lgslsklsgk glqqrmfflf
      781 ndillytsrg ltasnqfkvh ghlplygmti eeseeewgvp hcltlrgqhq sivvaastra
      841 emdkwtedvq maidlaekst gpapellass ppdnkspdet tvdqeseddl sasrtslerq
      901 sphrgnttvh vcwhrntsvs midfsiaven qlsgnllrkf knsngwqklw vvftnfcmff
      961 ykshqdnhpl aslpllgysl tipsesenih kdyvfklhfk shmyyfraes eytferwmev
     1021 irsatssasr tralshkeph ay
//
LOCUS       XP_053912079            1039 aa            linear   VRT 09-MAR-2023
DEFINITION  FERM, ARHGEF and pleckstrin domain-containing protein 1 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053912079
VERSION     XP_053912079.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056104.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1039
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1039
                     /product="FERM, ARHGEF and pleckstrin domain-containing
                     protein 1 isoform X3"
                     /calculated_mol_wt=118848
     Region          42..230
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Region          217..337
                     /region_name="FERM_C_FARP1-like"
                     /note="FERM domain C-lobe of FERM, RhoGEF and pleckstrin
                     domain-containing protein 1 and related proteins; cd13193"
                     /db_xref="CDD:270014"
     Site            order(234,251,253,259)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:270014"
     Site            order(263,268..271,306,310,313..314)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270014"
     Site            306..317
                     /site_type="other"
                     /note="putative actin binding site 2 [polypeptide
                     binding]"
                     /db_xref="CDD:270014"
     Region          329..372
                     /region_name="FA"
                     /note="FERM adjacent (FA); pfam08736"
                     /db_xref="CDD:462582"
     Region          536..723
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(541,545,647,674..675,678..679,681..682,685..686,
                     689..690,693,719,723)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          748..856
                     /region_name="PH1_FARP1-like"
                     /note="FERM, RhoGEF and pleckstrin domain-containing
                     protein 1 and related proteins Pleckstrin Homology (PH)
                     domain, repeat 1; cd01220"
                     /db_xref="CDD:269928"
     Region          925..1022
                     /region_name="PH2_FARP1-like"
                     /note="FERM, RhoGEF and pleckstrin domain-containing
                     protein 1 and related proteins Pleckstrin Homology (PH)
                     domain, repeat 2; cd13235"
                     /db_xref="CDD:270055"
     CDS             1..1039
                     /gene="FARP1"
                     /coded_by="XM_054056104.1:349..3468"
                     /db_xref="GeneID:104057295"
ORIGIN      
        1 mgeteqrpta gsrlgaqena gistlehgqk ppvtppgkli sikiqmlddt qetfdvpqra
       61 pgkvlhdavc nhlnlvegdy fglefpdhkk mmvwldllkp vikqirrpkh vvvkfvvkff
      121 ppdhaqlqee ltrylfalqv kqdlaqgrlt cndtstalli shivqseigd fdetidrehl
      181 aknkyipqqe aledkimefh rnhmgqtpae sdfqlleiar rlemygirlh pakdregtki
      241 nlavantgil vfqghtkina fnwakvrkls fkrkrflikl rpdvnssfqd tleflmasrd
      301 fcksfwkicv ehhaffrlfe epkpkpkpvl fsrgssfrfs grtqkqvldy vkegghkkvq
      361 ferkhskihs irsltaqtse qhtesssfay gddndaaavq scrqgkelkv stedvgqhks
      421 pslkkspkeg rkvdgavvst veeeeeaakd rmqqnrpqsq qpstagsltg sphlselsin
      481 sqggpsvanm slspnlspda kqssplispl lndpscirtd deeevkkkrf ptekayfiak
      541 evattertyl kdlevitswf qsavskedcm petlknlifs nfeplhkfht gflkeieqrl
      601 alwegrsnah ikgdyqrigd vmlkniqsmk qltihlwkhn eilmelengi knsrklenfc
      661 rdfelqkvcy lplntfllrp lhrlmhykqi merlckhypp shmdfrdsra alaeisemva
      721 qlhgnmikme nfqklhelkk dligidnlvi pgrefirlgs lsklsgkglq qrmfflfndi
      781 llytsrglta snqfkvhghl plygmtiees eeewgvphcl tlrgqhqsiv vaastraemd
      841 kwtedvqmai dlaekstgpa pellassppd nkspdettvd qeseddlsas rtslerqsph
      901 rgnttvhvcw hrntsvsmid fsiavenqls gnllrkfkns ngwqklwvvf tnfcmffyks
      961 hqdnhplasl pllgysltip sesenihkdy vfklhfkshm yyfraeseyt ferwmevirs
     1021 atssasrtra lshkephay
//
LOCUS       XP_053912080            1038 aa            linear   VRT 09-MAR-2023
DEFINITION  FERM, ARHGEF and pleckstrin domain-containing protein 1 isoform X4
            [Cuculus canorus].
ACCESSION   XP_053912080
VERSION     XP_053912080.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056105.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1038
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1038
                     /product="FERM, ARHGEF and pleckstrin domain-containing
                     protein 1 isoform X4"
                     /calculated_mol_wt=118777
     Region          42..230
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Region          217..337
                     /region_name="FERM_C_FARP1-like"
                     /note="FERM domain C-lobe of FERM, RhoGEF and pleckstrin
                     domain-containing protein 1 and related proteins; cd13193"
                     /db_xref="CDD:270014"
     Site            order(234,251,253,259)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:270014"
     Site            order(263,268..271,306,310,313..314)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270014"
     Site            306..317
                     /site_type="other"
                     /note="putative actin binding site 2 [polypeptide
                     binding]"
                     /db_xref="CDD:270014"
     Region          329..372
                     /region_name="FA"
                     /note="FERM adjacent (FA); pfam08736"
                     /db_xref="CDD:462582"
     Region          535..722
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(540,544,646,673..674,677..678,680..681,684..685,
                     688..689,692,718,722)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          747..855
                     /region_name="PH1_FARP1-like"
                     /note="FERM, RhoGEF and pleckstrin domain-containing
                     protein 1 and related proteins Pleckstrin Homology (PH)
                     domain, repeat 1; cd01220"
                     /db_xref="CDD:269928"
     Region          924..1021
                     /region_name="PH2_FARP1-like"
                     /note="FERM, RhoGEF and pleckstrin domain-containing
                     protein 1 and related proteins Pleckstrin Homology (PH)
                     domain, repeat 2; cd13235"
                     /db_xref="CDD:270055"
     CDS             1..1038
                     /gene="FARP1"
                     /coded_by="XM_054056105.1:349..3465"
                     /db_xref="GeneID:104057295"
ORIGIN      
        1 mgeteqrpta gsrlgaqena gistlehgqk ppvtppgkli sikiqmlddt qetfdvpqra
       61 pgkvlhdavc nhlnlvegdy fglefpdhkk mmvwldllkp vikqirrpkh vvvkfvvkff
      121 ppdhaqlqee ltrylfalqv kqdlaqgrlt cndtstalli shivqseigd fdetidrehl
      181 aknkyipqqe aledkimefh rnhmgqtpae sdfqlleiar rlemygirlh pakdregtki
      241 nlavantgil vfqghtkina fnwakvrkls fkrkrflikl rpdvnssfqd tleflmasrd
      301 fcksfwkicv ehhaffrlfe epkpkpkpvl fsrgssfrfs grtqkqvldy vkegghkkvq
      361 ferkhskihs irsltaqtse qhtesssfay gddndaaavq scrqgkelkv stedvgqhks
      421 pslkkspkeg rkvdgavvst veeeeeaakd rmqqnrpqsq qpstgsltgs phlselsins
      481 qggpsvanms lspnlspdak qssplispll ndpscirtdd eeevkkkrfp tekayfiake
      541 vattertylk dlevitswfq savskedcmp etlknlifsn feplhkfhtg flkeieqrla
      601 lwegrsnahi kgdyqrigdv mlkniqsmkq ltihlwkhne ilmelengik nsrklenfcr
      661 dfelqkvcyl plntfllrpl hrlmhykqim erlckhypps hmdfrdsraa laeisemvaq
      721 lhgnmikmen fqklhelkkd ligidnlvip grefirlgsl sklsgkglqq rmfflfndil
      781 lytsrgltas nqfkvhghlp lygmtieese eewgvphclt lrgqhqsivv aastraemdk
      841 wtedvqmaid laekstgpap ellassppdn kspdettvdq eseddlsasr tslerqsphr
      901 gnttvhvcwh rntsvsmidf siavenqlsg nllrkfknsn gwqklwvvft nfcmffyksh
      961 qdnhplaslp llgysltips esenihkdyv fklhfkshmy yfraeseytf erwmevirsa
     1021 tssasrtral shkephay
//
LOCUS       XP_053912081            1034 aa            linear   VRT 09-MAR-2023
DEFINITION  FERM, ARHGEF and pleckstrin domain-containing protein 1 isoform X5
            [Cuculus canorus].
ACCESSION   XP_053912081
VERSION     XP_053912081.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056106.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1034
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1034
                     /product="FERM, ARHGEF and pleckstrin domain-containing
                     protein 1 isoform X5"
                     /calculated_mol_wt=118327
     Region          42..230
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Region          217..337
                     /region_name="FERM_C_FARP1-like"
                     /note="FERM domain C-lobe of FERM, RhoGEF and pleckstrin
                     domain-containing protein 1 and related proteins; cd13193"
                     /db_xref="CDD:270014"
     Site            order(234,251,253,259)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:270014"
     Site            order(263,268..271,306,310,313..314)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270014"
     Site            306..317
                     /site_type="other"
                     /note="putative actin binding site 2 [polypeptide
                     binding]"
                     /db_xref="CDD:270014"
     Region          329..372
                     /region_name="FA"
                     /note="FERM adjacent (FA); pfam08736"
                     /db_xref="CDD:462582"
     Region          540..727
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; cd00160"
                     /db_xref="CDD:238091"
     Site            order(545,549,651,678..679,682..683,685..686,689..690,
                     693..694,697,723,727)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          752..860
                     /region_name="PH1_FARP1-like"
                     /note="FERM, RhoGEF and pleckstrin domain-containing
                     protein 1 and related proteins Pleckstrin Homology (PH)
                     domain, repeat 1; cd01220"
                     /db_xref="CDD:269928"
     Region          920..1017
                     /region_name="PH2_FARP1-like"
                     /note="FERM, RhoGEF and pleckstrin domain-containing
                     protein 1 and related proteins Pleckstrin Homology (PH)
                     domain, repeat 2; cd13235"
                     /db_xref="CDD:270055"
     CDS             1..1034
                     /gene="FARP1"
                     /coded_by="XM_054056106.1:351..3455"
                     /db_xref="GeneID:104057295"
ORIGIN      
        1 mgeteqrpta gsrlgaqena gistlehgqk ppvtppgkli sikiqmlddt qetfdvpqra
       61 pgkvlhdavc nhlnlvegdy fglefpdhkk mmvwldllkp vikqirrpkh vvvkfvvkff
      121 ppdhaqlqee ltrylfalqv kqdlaqgrlt cndtstalli shivqseigd fdetidrehl
      181 aknkyipqqe aledkimefh rnhmgqtpae sdfqlleiar rlemygirlh pakdregtki
      241 nlavantgil vfqghtkina fnwakvrkls fkrkrflikl rpdvnssfqd tleflmasrd
      301 fcksfwkicv ehhaffrlfe epkpkpkpvl fsrgssfrfs grtqkqvldy vkegghkkvq
      361 ferkhskihs irsltaqtse qhtevpkqss sfaygddnda aavqscrqgk elkvstedvg
      421 qhkspslkks pkegrkvdga vvstveeeee aakdrmqqnr pqsqqpstag sltgsphlse
      481 lsinsqggps vanmslspnl spdakqsspl ispllndpsc irtddeeevk kkrfptekay
      541 fiakevatte rtylkdlevi tswfqsavsk edcmpetlkn lifsnfeplh kfhtgflkei
      601 eqrlalwegr snahikgdyq rigdvmlkni qsmkqltihl wkhneilmel engiknsrkl
      661 enfcrdfelq kvcylplntf llrplhrlmh ykqimerlck hyppshmdfr dsraalaeis
      721 emvaqlhgnm ikmenfqklh elkkdligid nlvipgrefi rlgslsklsg kglqqrmffl
      781 fndillytsr gltasnqfkv hghlplygmt ieeseeewgv phcltlrgqh qsivvaastr
      841 aemdkwtedv qmaidlaeks tgpapellas sppdnkdpls vsdctslpag lisdqrpvsi
      901 syvcwyrmqs lsfydilqsn enqlsgnllr kfknsngwqk lwvvftnfcm ffykshqdnh
      961 plaslpllgy sltipsesen ihkdyvfklh fkshmyyfra eseytferwm evirsatssa
     1021 srtralshke phay
//
LOCUS       XP_053912082             455 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase 24 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912082
VERSION     XP_053912082.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056107.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..455
                     /product="serine/threonine-protein kinase 24 isoform X1"
                     /calculated_mol_wt=50664
     Region          46..319
                     /region_name="STKc_MST3_like"
                     /note="Catalytic domain of Mammalian Ste20-like protein
                     kinase 3-like Serine/Threonine Kinases; cd06609"
                     /db_xref="CDD:270786"
     Site            order(54..58,62,75,77,107,123..126,129..130,133,168,
                     170..173,175,185..186,189,203..206,208,235,244)
                     /site_type="active"
                     /db_xref="CDD:270786"
     Site            order(54..58,62,75,77,94,107,123..126,129..130,133,
                     172..173,175,186)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270786"
     Site            order(57..58,168,170..172,189,203..206,208,235,244)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270786"
     Site            order(185..196,198..208)
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270786"
     CDS             1..455
                     /gene="STK24"
                     /coded_by="XM_054056107.1:2259..3626"
                     /db_xref="GeneID:104057296"
ORIGIN      
        1 mfplrkcrla ekilkdease hrtavlqaag cvaaasfktl radpeelftk lekigkgsfg
       61 evfkgidnrt qkvvaikiid leeaedeied iqqeitvlsq cdspyvtkyy gsylkdtklw
      121 iimeylgggs aldllepgsl detqiatilr eilkgldylh sekkihrdik aanvllseqg
      181 evkladfgva gqltdtqikr ntfvgtpfwm apevikqsay dskadiwslg itaielakge
      241 pphselhpmk vlflipknnp ptlegnfsks lkefveacln kdpsfrptak ellkhkfilr
      301 nsrktsyltd lidrhkrwks eqshddsssd dsdtepdgqa sggsdsgewi ftirekdpkn
      361 lengaaqple lernkekdmp krplsqclat visplfaelk eksevcggnt dsieelrkai
      421 ylaeeacpgi adnmvshlvq rlrryslagg ssssy
//
LOCUS       XP_053912083             431 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase 24 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912083
VERSION     XP_053912083.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056108.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..431
                     /product="serine/threonine-protein kinase 24 isoform X2"
                     /calculated_mol_wt=47957
     Region          22..295
                     /region_name="STKc_MST3_like"
                     /note="Catalytic domain of Mammalian Ste20-like protein
                     kinase 3-like Serine/Threonine Kinases; cd06609"
                     /db_xref="CDD:270786"
     Site            order(30..34,38,51,53,83,99..102,105..106,109,144,
                     146..149,151,161..162,165,179..182,184,211,220)
                     /site_type="active"
                     /db_xref="CDD:270786"
     Site            order(30..34,38,51,53,70,83,99..102,105..106,109,148..149,
                     151,162)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270786"
     Site            order(33..34,144,146..148,165,179..182,184,211,220)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270786"
     Site            order(161..172,174..184)
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270786"
     CDS             1..431
                     /gene="STK24"
                     /coded_by="XM_054056108.1:198..1493"
                     /db_xref="GeneID:104057296"
ORIGIN      
        1 mahspvqtgl pgmqtlradp eelftkleki gkgsfgevfk gidnrtqkvv aikiidleea
       61 edeiediqqe itvlsqcdsp yvtkyygsyl kdtklwiime ylgggsaldl lepgsldetq
      121 iatilreilk gldylhsekk ihrdikaanv llseqgevkl adfgvagqlt dtqikrntfv
      181 gtpfwmapev ikqsaydska diwslgitai elakgepphs elhpmkvlfl ipknnpptle
      241 gnfskslkef veaclnkdps frptakellk hkfilrnsrk tsyltdlidr hkrwkseqsh
      301 ddsssddsdt epdgqasggs dsgewiftir ekdpknleng aaqplelern kekdmpkrpl
      361 sqclatvisp lfaelkekse vcggntdsie elrkaiylae eacpgiadnm vshlvqrlrr
      421 yslaggssss y
//
LOCUS       XP_053912084             333 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase 24 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912084
VERSION     XP_053912084.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056109.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..333
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..333
                     /product="serine/threonine-protein kinase 24 isoform X3"
                     /calculated_mol_wt=36881
     Region          <1..197
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     CDS             1..333
                     /gene="STK24"
                     /coded_by="XM_054056109.1:672..1673"
                     /db_xref="GeneID:104057296"
ORIGIN      
        1 meylgggsal dllepgslde tqiatilrei lkgldylhse kkihrdikaa nvllseqgev
       61 kladfgvagq ltdtqikrnt fvgtpfwmap evikqsayds kadiwslgit aielakgepp
      121 hselhpmkvl flipknnppt legnfskslk efveaclnkd psfrptakel lkhkfilrns
      181 rktsyltdli drhkrwkseq shddsssdds dtepdgqasg gsdsgewift irekdpknle
      241 ngaaqplele rnkekdmpkr plsqclatvi splfaelkek sevcggntds ieelrkaiyl
      301 aeeacpgiad nmvshlvqrl rryslaggss ssy
//
LOCUS       XP_009567344             286 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 3 [Cuculus canorus].
ACCESSION   XP_009567344
VERSION     XP_009567344.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009569049.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567344.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..286
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..286
                     /product="coiled-coil domain-containing protein 3"
                     /calculated_mol_wt=32085
     Region          <176..259
                     /region_name="YscO"
                     /note="Type III secretion protein YscO; pfam07321"
                     /db_xref="CDD:399954"
     CDS             1..286
                     /gene="CCDC3"
                     /coded_by="XM_009569049.2:188..1048"
                     /db_xref="GeneID:104066449"
ORIGIN      
        1 mppapgplll vlgwglglgg lvgggggcql paewrplseg craelaaiiv yarvlalhpd
       61 tygaynylpw qrgppsgpqq eagglfysae iellcdqawg smlevpagsr lnltglgyfs
      121 chshtvmqgy ayffflrmde nyillphgvn fqeaifpdtq enrrmfaslf qfsncsqaqh
      181 mlsfssdwev qednrlmcss vqkalfeeed rvkklqqkva tlekrnkqlr drvkkvkrsl
      241 rqarkntrhm eqinrklsek lssaggqipy inslkqensh atylkv
//
LOCUS       XP_009563866             458 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphatidylinositol N-acetylglucosaminyltransferase subunit A
            [Cuculus canorus].
ACCESSION   XP_009563866
VERSION     XP_009563866.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565571.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009563866.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..458
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..458
                     /product="phosphatidylinositol
                     N-acetylglucosaminyltransferase subunit A"
                     /calculated_mol_wt=51124
     Region          8..407
                     /region_name="GT4_PIG-A-like"
                     /note="phosphatidylinositol
                     N-acetylglucosaminyltransferase subunit A and similar
                     proteins; cd03796"
                     /db_xref="CDD:340827"
     Site            order(22,206..208,270,292)
                     /site_type="other"
                     /note="putative ADP-binding pocket [chemical binding]"
                     /db_xref="CDD:340827"
     CDS             1..458
                     /gene="PIGA"
                     /coded_by="XM_009565571.2:117..1493"
                     /db_xref="GeneID:104063402"
ORIGIN      
        1 margaphsvc mvsdffypnm ggveshvyql sqclierghk vlvvthaygr rkgvryltng
       61 lkvyhlplkv mynqstattl fhslpllryi ftrervtvvh ahssfsamah dalfhaktmg
      121 lrtvftdhsl fgfadvssvl tnklltvslc dtnhiicvsy tskentvlra aldprivsvi
      181 pnavdptdft pdpsrrddst itvvvvsrlv yrkgidllsg iipelcqkyp elhflvggeg
      241 pkriileevr eryqlhdrvr llgalehqdv rnvlvqghif lntslteafc maiveaascg
      301 lqvvstrvgg ipevlpenli ilcepsvksl cdglekaiaq lrsgtlpspe tlhnkvktfy
      361 twrnvaerte kvydrvadev vlsmderlkr lmshcgpvtg cifalfavln flflaflrwi
      421 tpdsvidvai datgpkgawt kknflrkkgr vkeefsss
//
LOCUS       XP_053912087             167 aa            linear   VRT 09-MAR-2023
DEFINITION  CGG triplet repeat-binding protein 1 [Cuculus canorus].
ACCESSION   XP_053912087
VERSION     XP_053912087.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056112.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..167
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..167
                     /product="CGG triplet repeat-binding protein 1"
                     /calculated_mol_wt=18866
     CDS             1..167
                     /gene="CGGBP1"
                     /coded_by="XM_054056112.1:134..637"
                     /db_xref="GeneID:104055965"
ORIGIN      
        1 merfgvksap srnrsktaly vtpqdrvtef gselhedggk lfctscnvvl nhvrksaind
       61 hlkskthtkr kaefeeqnvr kkqrtltasl qcnstaqtek tsviqdfvkm cleaniplek
      121 adhpavrafl sryvkngsli pksdqlrkay lpdgydnenq lintedr
//
LOCUS       XP_053912090             167 aa            linear   VRT 09-MAR-2023
DEFINITION  CGG triplet repeat-binding protein 1 [Cuculus canorus].
ACCESSION   XP_053912090
VERSION     XP_053912090.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056115.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..167
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..167
                     /product="CGG triplet repeat-binding protein 1"
                     /calculated_mol_wt=18866
     CDS             1..167
                     /gene="CGGBP1"
                     /coded_by="XM_054056115.1:189..692"
                     /db_xref="GeneID:104055965"
ORIGIN      
        1 merfgvksap srnrsktaly vtpqdrvtef gselhedggk lfctscnvvl nhvrksaind
       61 hlkskthtkr kaefeeqnvr kkqrtltasl qcnstaqtek tsviqdfvkm cleaniplek
      121 adhpavrafl sryvkngsli pksdqlrkay lpdgydnenq lintedr
//
LOCUS       XP_053912091             167 aa            linear   VRT 09-MAR-2023
DEFINITION  CGG triplet repeat-binding protein 1 [Cuculus canorus].
ACCESSION   XP_053912091
VERSION     XP_053912091.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056116.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..167
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..167
                     /product="CGG triplet repeat-binding protein 1"
                     /calculated_mol_wt=18866
     CDS             1..167
                     /gene="CGGBP1"
                     /coded_by="XM_054056116.1:121..624"
                     /db_xref="GeneID:104055965"
ORIGIN      
        1 merfgvksap srnrsktaly vtpqdrvtef gselhedggk lfctscnvvl nhvrksaind
       61 hlkskthtkr kaefeeqnvr kkqrtltasl qcnstaqtek tsviqdfvkm cleaniplek
      121 adhpavrafl sryvkngsli pksdqlrkay lpdgydnenq lintedr
//
LOCUS       XP_053912092             200 aa            linear   VRT 09-MAR-2023
DEFINITION  LHFPL tetraspan subfamily member 6 protein [Cuculus canorus].
ACCESSION   XP_053912092
VERSION     XP_053912092.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056117.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..200
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..200
                     /product="LHFPL tetraspan subfamily member 6 protein"
                     /calculated_mol_wt=21352
     Region          9..193
                     /region_name="L_HMGIC_fpl"
                     /note="Lipoma HMGIC fusion partner-like protein;
                     pfam10242"
                     /db_xref="CDD:463019"
     CDS             1..200
                     /gene="LHFPL6"
                     /coded_by="XM_054056117.1:334..936"
                     /db_xref="GeneID:104066133"
ORIGIN      
        1 massltcagv vwaflsflca aascvgffmp ywllgsqlek svsfgtfrrc sypvrdesrq
       61 ttvmveqcgr yasfqaipsa ewrictvvtg lgcgllllva ltalmgccvs elisrtvgrv
      121 aggiqflggl ligsgcalyp lgwdseevrq tcgnisnqfe lgtchigway yctgggaaaa
      181 mlvctwlacf sgkkqkqypy
//
LOCUS       XP_053912093             214 aa            linear   VRT 09-MAR-2023
DEFINITION  charged multivesicular body protein 2b [Cuculus canorus].
ACCESSION   XP_053912093
VERSION     XP_053912093.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056118.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..214
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..214
                     /product="charged multivesicular body protein 2b"
                     /calculated_mol_wt=23866
     Region          16..185
                     /region_name="Snf7"
                     /note="pfam03357"
                     /db_xref="CDD:460896"
     CDS             1..214
                     /gene="CHMP2B"
                     /coded_by="XM_054056118.1:124..768"
                     /db_xref="GeneID:104056028"
ORIGIN      
        1 maslfkkktv ddvikeqnre lrgtqraitr draglekqek qleleikkma ktgnkeackv
       61 lakqlvqlrk qknrtyavss kvtsmstqtk vmnsqlkmav amsttsktmq avnkkmdpqk
      121 tlqtmqnfqk enmkmemtee mindtlddif dasdeeeesq divnqvldei gieisgkmak
      181 apsaarglps astskaatis deeierqlka lgvd
//
LOCUS       XP_053912094             197 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP-ribosylation factor-like protein 6 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912094
VERSION     XP_053912094.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056119.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..197
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..197
                     /product="ADP-ribosylation factor-like protein 6 isoform
                     X1"
                     /calculated_mol_wt=22208
     Region          19..191
                     /region_name="Arl6"
                     /note="Arf-like 6 (Arl6) GTPase; cd04157"
                     /db_xref="CDD:206722"
     Site            24..31
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206722"
     Site            order(26..32,49..50,73,141..142,144,174..176)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206722"
     Site            order(26..27,31,35,49..56,79,84)
                     /site_type="other"
                     /note="putative GAP interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206722"
     Site            order(36..40,43..53)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206722"
     Site            order(50..54,59,70,74,80,82..84)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206722"
     Site            50
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206722"
     Site            order(51..58,69,80,83..84)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206722"
     Site            order(54..60,64..69)
                     /site_type="active"
                     /note="interswitch region [active]"
                     /db_xref="CDD:206722"
     Site            70..87
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206722"
     Site            70..73
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206722"
     Site            141..144
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206722"
     Site            174..176
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206722"
     CDS             1..197
                     /gene="ARL6"
                     /coded_by="XM_054056119.1:169..762"
                     /db_xref="GeneID:104055970"
ORIGIN      
        1 mglfdklagw lglkkkevhv lclgldnsgk ttiinklkps naqtqdivpt igfsiekfkt
       61 srylsftvfd msgqgryrnl wehyykegqa iifvidssdk lrmvvakeel dtllnhpgcs
      121 lrrtavtdik hrrlpilffa nkmdlrdais svkvsqllsl enikdkpwhi casdalkgeg
      181 lqegvdwlqd qiqatkt
//
LOCUS       XP_053912095             197 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP-ribosylation factor-like protein 6 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912095
VERSION     XP_053912095.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056120.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..197
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..197
                     /product="ADP-ribosylation factor-like protein 6 isoform
                     X1"
                     /calculated_mol_wt=22208
     Region          19..191
                     /region_name="Arl6"
                     /note="Arf-like 6 (Arl6) GTPase; cd04157"
                     /db_xref="CDD:206722"
     Site            24..31
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206722"
     Site            order(26..32,49..50,73,141..142,144,174..176)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206722"
     Site            order(26..27,31,35,49..56,79,84)
                     /site_type="other"
                     /note="putative GAP interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206722"
     Site            order(36..40,43..53)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206722"
     Site            order(50..54,59,70,74,80,82..84)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206722"
     Site            50
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206722"
     Site            order(51..58,69,80,83..84)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206722"
     Site            order(54..60,64..69)
                     /site_type="active"
                     /note="interswitch region [active]"
                     /db_xref="CDD:206722"
     Site            70..87
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206722"
     Site            70..73
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206722"
     Site            141..144
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206722"
     Site            174..176
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206722"
     CDS             1..197
                     /gene="ARL6"
                     /coded_by="XM_054056120.1:188..781"
                     /db_xref="GeneID:104055970"
ORIGIN      
        1 mglfdklagw lglkkkevhv lclgldnsgk ttiinklkps naqtqdivpt igfsiekfkt
       61 srylsftvfd msgqgryrnl wehyykegqa iifvidssdk lrmvvakeel dtllnhpgcs
      121 lrrtavtdik hrrlpilffa nkmdlrdais svkvsqllsl enikdkpwhi casdalkgeg
      181 lqegvdwlqd qiqatkt
//
LOCUS       XP_053912096             197 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP-ribosylation factor-like protein 6 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912096
VERSION     XP_053912096.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056121.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..197
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..197
                     /product="ADP-ribosylation factor-like protein 6 isoform
                     X1"
                     /calculated_mol_wt=22208
     Region          19..191
                     /region_name="Arl6"
                     /note="Arf-like 6 (Arl6) GTPase; cd04157"
                     /db_xref="CDD:206722"
     Site            24..31
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206722"
     Site            order(26..32,49..50,73,141..142,144,174..176)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206722"
     Site            order(26..27,31,35,49..56,79,84)
                     /site_type="other"
                     /note="putative GAP interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206722"
     Site            order(36..40,43..53)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206722"
     Site            order(50..54,59,70,74,80,82..84)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206722"
     Site            50
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206722"
     Site            order(51..58,69,80,83..84)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206722"
     Site            order(54..60,64..69)
                     /site_type="active"
                     /note="interswitch region [active]"
                     /db_xref="CDD:206722"
     Site            70..87
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206722"
     Site            70..73
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206722"
     Site            141..144
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206722"
     Site            174..176
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206722"
     CDS             1..197
                     /gene="ARL6"
                     /coded_by="XM_054056121.1:81..674"
                     /db_xref="GeneID:104055970"
ORIGIN      
        1 mglfdklagw lglkkkevhv lclgldnsgk ttiinklkps naqtqdivpt igfsiekfkt
       61 srylsftvfd msgqgryrnl wehyykegqa iifvidssdk lrmvvakeel dtllnhpgcs
      121 lrrtavtdik hrrlpilffa nkmdlrdais svkvsqllsl enikdkpwhi casdalkgeg
      181 lqegvdwlqd qiqatkt
//
LOCUS       XP_053912097             196 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP-ribosylation factor-like protein 6 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912097
VERSION     XP_053912097.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056122.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..196
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..196
                     /product="ADP-ribosylation factor-like protein 6 isoform
                     X2"
                     /calculated_mol_wt=21975
     Region          19..190
                     /region_name="Arl6"
                     /note="Arf-like 6 (Arl6) GTPase; cd04157"
                     /db_xref="CDD:206722"
     Site            24..31
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206722"
     Site            order(26..32,49..50,72,140..141,143,173..175)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206722"
     Site            order(26..27,31,35,49..56,78,83)
                     /site_type="other"
                     /note="putative GAP interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206722"
     Site            order(36..40,43..53)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206722"
     Site            order(50..54,59,69,73,79,81..83)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206722"
     Site            50
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206722"
     Site            order(51..58,68,79,82..83)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206722"
     Site            order(54..60,63..68)
                     /site_type="active"
                     /note="interswitch region [active]"
                     /db_xref="CDD:206722"
     Site            69..86
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206722"
     Site            69..72
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206722"
     Site            140..143
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206722"
     Site            173..175
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206722"
     CDS             1..196
                     /gene="ARL6"
                     /coded_by="XM_054056122.1:169..759"
                     /db_xref="GeneID:104055970"
ORIGIN      
        1 mglfdklagw lglkkkevhv lclgldnsgk ttiinklkps naqtqdivpt igfsiekfkt
       61 sslsftvfdm sgqgryrnlw ehyykegqai ifvidssdkl rmvvakeeld tllnhpgcsl
      121 rrtavtdikh rrlpilffan kmdlrdaiss vkvsqllsle nikdkpwhic asdalkgegl
      181 qegvdwlqdq iqatkt
//
LOCUS       XP_053912098             187 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP-ribosylation factor-like protein 6 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053912098
VERSION     XP_053912098.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056123.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..187
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..187
                     /product="ADP-ribosylation factor-like protein 6 isoform
                     X3"
                     /calculated_mol_wt=21163
     Region          19..181
                     /region_name="Arl6"
                     /note="Arf-like 6 (Arl6) GTPase; cd04157"
                     /db_xref="CDD:206722"
     Site            24..31
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206722"
     Site            order(26..32,49..50,73,131..132,134,164..166)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206722"
     Site            order(26..27,31,35,49..56,79,84)
                     /site_type="other"
                     /note="putative GAP interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206722"
     Site            order(36..40,43..53)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206722"
     Site            order(50..54,59,70,74,80,82..84)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206722"
     Site            50
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206722"
     Site            order(51..58,69,80,83..84)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206722"
     Site            order(54..60,64..69)
                     /site_type="active"
                     /note="interswitch region [active]"
                     /db_xref="CDD:206722"
     Site            70..87
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206722"
     Site            70..73
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206722"
     Site            131..134
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206722"
     Site            164..166
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206722"
     CDS             1..187
                     /gene="ARL6"
                     /coded_by="XM_054056123.1:169..732"
                     /db_xref="GeneID:104055970"
ORIGIN      
        1 mglfdklagw lglkkkevhv lclgldnsgk ttiinklkps naqtqdivpt igfsiekfkt
       61 srylsftvfd msgqgryrnl wehyykegqa iifvidssdk lrmvvakeel dtllnhpdik
      121 hrrlpilffa nkmdlrdais svkvsqllsl enikdkpwhi casdalkgeg lqegvdwlqd
      181 qiqatkt
//
LOCUS       XP_053912099             186 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP-ribosylation factor-like protein 6 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053912099
VERSION     XP_053912099.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056124.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..186
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..186
                     /product="ADP-ribosylation factor-like protein 6 isoform
                     X4"
                     /calculated_mol_wt=20930
     Region          19..180
                     /region_name="Arl6"
                     /note="Arf-like 6 (Arl6) GTPase; cd04157"
                     /db_xref="CDD:206722"
     Site            24..31
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206722"
     Site            order(26..32,49..50,72,130..131,133,163..165)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206722"
     Site            order(26..27,31,35,49..56,78,83)
                     /site_type="other"
                     /note="putative GAP interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206722"
     Site            order(36..40,43..53)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206722"
     Site            order(50..54,59,69,73,79,81..83)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206722"
     Site            50
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206722"
     Site            order(51..58,68,79,82..83)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206722"
     Site            order(54..60,63..68)
                     /site_type="active"
                     /note="interswitch region [active]"
                     /db_xref="CDD:206722"
     Site            69..86
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206722"
     Site            69..72
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206722"
     Site            130..133
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206722"
     Site            163..165
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206722"
     CDS             1..186
                     /gene="ARL6"
                     /coded_by="XM_054056124.1:169..729"
                     /db_xref="GeneID:104055970"
ORIGIN      
        1 mglfdklagw lglkkkevhv lclgldnsgk ttiinklkps naqtqdivpt igfsiekfkt
       61 sslsftvfdm sgqgryrnlw ehyykegqai ifvidssdkl rmvvakeeld tllnhpdikh
      121 rrlpilffan kmdlrdaiss vkvsqllsle nikdkpwhic asdalkgegl qegvdwlqdq
      181 iqatkt
//
LOCUS       XP_053912100             352 aa            linear   VRT 09-MAR-2023
DEFINITION  tsukushi [Cuculus canorus].
ACCESSION   XP_053912100
VERSION     XP_053912100.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056125.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..352
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..352
                     /product="tsukushi"
                     /calculated_mol_wt=38450
     Region          41..60
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          60..>312
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          62..87
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          88..111
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          112..160
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          136..155
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          161..184
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          185..203
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          206..229
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          230..254
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          255..279
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          280..303
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     CDS             1..352
                     /gene="TSKU"
                     /coded_by="XM_054056125.1:340..1398"
                     /db_xref="GeneID:104064133"
ORIGIN      
        1 mqflawfnll lllpcfgttk tcfpgchcev esfglfdsfs ltkvdcsgig shivpvpipl
       61 dtsyldlssn kletinesml tgpgyttlvs ldlsynkiak ispttfsrlr ylesldlshn
      121 sleilpedcf sssslsdidl snnklldiam difaskgqgk plnvdlsnnm lstimrhrek
      181 snpniqnlnl sgnrlmsvpn lqgiplryln ldgnpivkie kndfmglkdl ihlslsglhg
      241 fgvlspysfk elpalqvldl ssnpdlkslt aevifglnsl qelnlsgtgv salpktvlky
      301 lpsiksitlg kniqclktik egqyhrqtgl tkkevlschd shgsiaaapy vl
//
LOCUS       XP_053912101             352 aa            linear   VRT 09-MAR-2023
DEFINITION  tsukushi [Cuculus canorus].
ACCESSION   XP_053912101
VERSION     XP_053912101.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056126.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..352
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..352
                     /product="tsukushi"
                     /calculated_mol_wt=38450
     Region          41..60
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          60..>312
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          62..87
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          88..111
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          112..160
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          136..155
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          161..184
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          185..203
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          206..229
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          230..254
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          255..279
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          280..303
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     CDS             1..352
                     /gene="TSKU"
                     /coded_by="XM_054056126.1:965..2023"
                     /db_xref="GeneID:104064133"
ORIGIN      
        1 mqflawfnll lllpcfgttk tcfpgchcev esfglfdsfs ltkvdcsgig shivpvpipl
       61 dtsyldlssn kletinesml tgpgyttlvs ldlsynkiak ispttfsrlr ylesldlshn
      121 sleilpedcf sssslsdidl snnklldiam difaskgqgk plnvdlsnnm lstimrhrek
      181 snpniqnlnl sgnrlmsvpn lqgiplryln ldgnpivkie kndfmglkdl ihlslsglhg
      241 fgvlspysfk elpalqvldl ssnpdlkslt aevifglnsl qelnlsgtgv salpktvlky
      301 lpsiksitlg kniqclktik egqyhrqtgl tkkevlschd shgsiaaapy vl
//
LOCUS       XP_053912102             352 aa            linear   VRT 09-MAR-2023
DEFINITION  tsukushi [Cuculus canorus].
ACCESSION   XP_053912102
VERSION     XP_053912102.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056127.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..352
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..352
                     /product="tsukushi"
                     /calculated_mol_wt=38450
     Region          41..60
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          60..>312
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          62..87
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          88..111
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          112..160
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          136..155
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          161..184
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          185..203
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          206..229
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          230..254
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          255..279
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          280..303
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     CDS             1..352
                     /gene="TSKU"
                     /coded_by="XM_054056127.1:336..1394"
                     /db_xref="GeneID:104064133"
ORIGIN      
        1 mqflawfnll lllpcfgttk tcfpgchcev esfglfdsfs ltkvdcsgig shivpvpipl
       61 dtsyldlssn kletinesml tgpgyttlvs ldlsynkiak ispttfsrlr ylesldlshn
      121 sleilpedcf sssslsdidl snnklldiam difaskgqgk plnvdlsnnm lstimrhrek
      181 snpniqnlnl sgnrlmsvpn lqgiplryln ldgnpivkie kndfmglkdl ihlslsglhg
      241 fgvlspysfk elpalqvldl ssnpdlkslt aevifglnsl qelnlsgtgv salpktvlky
      301 lpsiksitlg kniqclktik egqyhrqtgl tkkevlschd shgsiaaapy vl
//
LOCUS       XP_053912104             352 aa            linear   VRT 09-MAR-2023
DEFINITION  tsukushi [Cuculus canorus].
ACCESSION   XP_053912104
VERSION     XP_053912104.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056129.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..352
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..352
                     /product="tsukushi"
                     /calculated_mol_wt=38450
     Region          41..60
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          60..>312
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          62..87
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          88..111
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          112..160
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          136..155
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          161..184
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          185..203
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          206..229
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          230..254
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          255..279
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          280..303
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     CDS             1..352
                     /gene="TSKU"
                     /coded_by="XM_054056129.1:169..1227"
                     /db_xref="GeneID:104064133"
ORIGIN      
        1 mqflawfnll lllpcfgttk tcfpgchcev esfglfdsfs ltkvdcsgig shivpvpipl
       61 dtsyldlssn kletinesml tgpgyttlvs ldlsynkiak ispttfsrlr ylesldlshn
      121 sleilpedcf sssslsdidl snnklldiam difaskgqgk plnvdlsnnm lstimrhrek
      181 snpniqnlnl sgnrlmsvpn lqgiplryln ldgnpivkie kndfmglkdl ihlslsglhg
      241 fgvlspysfk elpalqvldl ssnpdlkslt aevifglnsl qelnlsgtgv salpktvlky
      301 lpsiksitlg kniqclktik egqyhrqtgl tkkevlschd shgsiaaapy vl
//
LOCUS       XP_053912105             352 aa            linear   VRT 09-MAR-2023
DEFINITION  tsukushi [Cuculus canorus].
ACCESSION   XP_053912105
VERSION     XP_053912105.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056130.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..352
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..352
                     /product="tsukushi"
                     /calculated_mol_wt=38450
     Region          41..60
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          60..>312
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          62..87
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          88..111
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          112..160
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          136..155
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          161..184
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          185..203
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          206..229
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          230..254
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          255..279
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          280..303
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     CDS             1..352
                     /gene="TSKU"
                     /coded_by="XM_054056130.1:514..1572"
                     /db_xref="GeneID:104064133"
ORIGIN      
        1 mqflawfnll lllpcfgttk tcfpgchcev esfglfdsfs ltkvdcsgig shivpvpipl
       61 dtsyldlssn kletinesml tgpgyttlvs ldlsynkiak ispttfsrlr ylesldlshn
      121 sleilpedcf sssslsdidl snnklldiam difaskgqgk plnvdlsnnm lstimrhrek
      181 snpniqnlnl sgnrlmsvpn lqgiplryln ldgnpivkie kndfmglkdl ihlslsglhg
      241 fgvlspysfk elpalqvldl ssnpdlkslt aevifglnsl qelnlsgtgv salpktvlky
      301 lpsiksitlg kniqclktik egqyhrqtgl tkkevlschd shgsiaaapy vl
//
LOCUS       XP_053912106             383 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor EC isoform X1 [Cuculus canorus].
ACCESSION   XP_053912106
VERSION     XP_053912106.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056131.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..383
                     /product="transcription factor EC isoform X1"
                     /calculated_mol_wt=42984
     Region          <9..99
                     /region_name="MITF_TFEB_C_3_N"
                     /note="MITF/TFEB/TFEC/TFE3 N-terminus; pfam15951"
                     /db_xref="CDD:464952"
     Region          172..256
                     /region_name="bHLHzip_TFEC"
                     /note="basic Helix-Loop-Helix-zipper (bHLHzip) domain
                     found in transcription factor EC (TFEC) and similar
                     proteins; cd18925"
                     /db_xref="CDD:381495"
     Site            order(180..181,183..184,187..188,192,213..214)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381495"
     Site            order(190..191,194..195,197,201,214,218..219,222,224..226,
                     228..229,231..232,235,238..240)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381495"
     Region          261..380
                     /region_name="DUF3371"
                     /note="Domain of unknown function (DUF3371); pfam11851"
                     /db_xref="CDD:463372"
     CDS             1..383
                     /gene="TFEC"
                     /coded_by="XM_054056131.1:103..1254"
                     /db_xref="GeneID:104064340"
ORIGIN      
        1 mleyswygqv qtrlenqsry hiqqsqrhqv kqyltldtkl ssqtlslshs htiqpagvts
       61 ilrnghmppv sdigtpespv tkllalggeh enameevied iinmessfnd egigcsetpl
      121 lmqrtlsgsi ldiynsdqgm apanmgltna scpanlpvkr elteadtram akerqkkdnh
      181 nlierrrryn inyrikelgt lipksndpdm rwnkgtilka sveyikwlqk eqqrareleh
      241 rqkklehanr rlllriqele iqarahglpv msslsavdla tqvikqqsyp eensvdysqq
      301 mplahgpnsd vcdgstafsd plshftdlsf saalkeeqrl eeillddtvs pfgtdpllss
      361 tspaaskess rrssfstddg ddl
//
LOCUS       XP_053912107             382 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor EC isoform X2 [Cuculus canorus].
ACCESSION   XP_053912107
VERSION     XP_053912107.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056132.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..382
                     /product="transcription factor EC isoform X2"
                     /calculated_mol_wt=42855
     Region          <9..99
                     /region_name="MITF_TFEB_C_3_N"
                     /note="MITF/TFEB/TFEC/TFE3 N-terminus; pfam15951"
                     /db_xref="CDD:464952"
     Region          171..255
                     /region_name="bHLHzip_TFEC"
                     /note="basic Helix-Loop-Helix-zipper (bHLHzip) domain
                     found in transcription factor EC (TFEC) and similar
                     proteins; cd18925"
                     /db_xref="CDD:381495"
     Site            order(179..180,182..183,186..187,191,212..213)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381495"
     Site            order(189..190,193..194,196,200,213,217..218,221,223..225,
                     227..228,230..231,234,237..239)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381495"
     Region          260..379
                     /region_name="DUF3371"
                     /note="Domain of unknown function (DUF3371); pfam11851"
                     /db_xref="CDD:463372"
     CDS             1..382
                     /gene="TFEC"
                     /coded_by="XM_054056132.1:103..1251"
                     /db_xref="GeneID:104064340"
ORIGIN      
        1 mleyswygqv qtrlenqsry hiqqsqrhqv kqyltldtkl ssqtlslshs htiqpagvts
       61 ilrnghmppv sdigtpespv tkllalggeh enameevied iinmessfnd egigcsetpl
      121 lmqrtlsgsi ldiynsdqgm apanmgltna scpanlpvkr eltadtrama kerqkkdnhn
      181 lierrrryni nyrikelgtl ipksndpdmr wnkgtilkas veyikwlqke qqrarelehr
      241 qkklehanrr lllriqelei qarahglpvm sslsavdlat qvikqqsype ensvdysqqm
      301 plahgpnsdv cdgstafsdp lshftdlsfs aalkeeqrle eillddtvsp fgtdpllsst
      361 spaaskessr rssfstddgd dl
//
LOCUS       XP_053912108             317 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor EC isoform X3 [Cuculus canorus].
ACCESSION   XP_053912108
VERSION     XP_053912108.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056133.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..317
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..317
                     /product="transcription factor EC isoform X3"
                     /calculated_mol_wt=35293
     Region          106..190
                     /region_name="bHLHzip_TFEC"
                     /note="basic Helix-Loop-Helix-zipper (bHLHzip) domain
                     found in transcription factor EC (TFEC) and similar
                     proteins; cd18925"
                     /db_xref="CDD:381495"
     Site            order(114..115,117..118,121..122,126,147..148)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381495"
     Site            order(124..125,128..129,131,135,148,152..153,156,158..160,
                     162..163,165..166,169,172..174)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381495"
     Region          195..314
                     /region_name="DUF3371"
                     /note="Domain of unknown function (DUF3371); pfam11851"
                     /db_xref="CDD:463372"
     CDS             1..317
                     /gene="TFEC"
                     /coded_by="XM_054056133.1:263..1216"
                     /db_xref="GeneID:104064340"
ORIGIN      
        1 mppvsdigtp espvtkllal ggehenamee viediinmes sfndegigcs etpllmqrtl
       61 sgsildiyns dqgmapanmg ltnascpanl pvkreltead tramakerqk kdnhnlierr
      121 rryninyrik elgtlipksn dpdmrwnkgt ilkasveyik wlqkeqqrar elehrqkkle
      181 hanrrlllri qeleiqarah glpvmsslsa vdlatqvikq qsypeensvd ysqqmplahg
      241 pnsdvcdgst afsdplshft dlsfsaalke eqrleeilld dtvspfgtdp llsstspaas
      301 kessrrssfs tddgddl
//
LOCUS       XP_053912109             278 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor EC isoform X4 [Cuculus canorus].
ACCESSION   XP_053912109
VERSION     XP_053912109.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056134.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..278
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..278
                     /product="transcription factor EC isoform X4"
                     /calculated_mol_wt=31264
     Region          67..151
                     /region_name="bHLHzip_TFEC"
                     /note="basic Helix-Loop-Helix-zipper (bHLHzip) domain
                     found in transcription factor EC (TFEC) and similar
                     proteins; cd18925"
                     /db_xref="CDD:381495"
     Site            order(75..76,78..79,82..83,87,108..109)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381495"
     Site            order(85..86,89..90,92,96,109,113..114,117,119..121,
                     123..124,126..127,130,133..135)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381495"
     Region          156..275
                     /region_name="DUF3371"
                     /note="Domain of unknown function (DUF3371); pfam11851"
                     /db_xref="CDD:463372"
     CDS             1..278
                     /gene="TFEC"
                     /coded_by="XM_054056134.1:72..908"
                     /db_xref="GeneID:104064340"
ORIGIN      
        1 mkekeltvai eeikdskikl lsgsildiyn sdqgmapanm gltnascpan lpvkreltea
       61 dtramakerq kkdnhnlier rrryninyri kelgtlipks ndpdmrwnkg tilkasveyi
      121 kwlqkeqqra relehrqkkl ehanrrlllr iqeleiqara hglpvmssls avdlatqvik
      181 qqsypeensv dysqqmplah gpnsdvcdgs tafsdplshf tdlsfsaalk eeqrleeill
      241 ddtvspfgtd pllsstspaa skessrrssf stddgddl
//
LOCUS       XP_053912110             441 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor EC isoform X5 [Cuculus canorus].
ACCESSION   XP_053912110
VERSION     XP_053912110.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056135.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..441
                     /product="transcription factor EC isoform X5"
                     /calculated_mol_wt=49482
     Region          13..157
                     /region_name="MITF_TFEB_C_3_N"
                     /note="MITF/TFEB/TFEC/TFE3 N-terminus; pfam15951"
                     /db_xref="CDD:464952"
     Region          230..314
                     /region_name="bHLHzip_TFEC"
                     /note="basic Helix-Loop-Helix-zipper (bHLHzip) domain
                     found in transcription factor EC (TFEC) and similar
                     proteins; cd18925"
                     /db_xref="CDD:381495"
     Site            order(238..239,241..242,245..246,250,271..272)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381495"
     Site            order(248..249,252..253,255,259,272,276..277,280,282..284,
                     286..287,289..290,293,296..298)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381495"
     Region          319..438
                     /region_name="DUF3371"
                     /note="Domain of unknown function (DUF3371); pfam11851"
                     /db_xref="CDD:463372"
     CDS             1..441
                     /gene="TFEC"
                     /coded_by="XM_054056135.1:127..1452"
                     /db_xref="GeneID:104064340"
ORIGIN      
        1 mlqaltglqf rlrgklqdqe wtdkhlqeea hahysqchmp vsrypgfngf fpvgthfssd
       61 kapaisevqt rlenqsryhi qqsqrhqvkq yltldtklss qtlslshsht iqpagvtsil
      121 rnghmppvsd igtpespvtk llalggehen ameeviedii nmessfndeg igcsetpllm
      181 qrtlsgsild iynsdqgmap anmgltnasc panlpvkrel teadtramak erqkkdnhnl
      241 ierrrrynin yrikelgtli pksndpdmrw nkgtilkasv eyikwlqkeq qrarelehrq
      301 kklehanrrl llriqeleiq arahglpvms slsavdlatq vikqqsypee nsvdysqqmp
      361 lahgpnsdvc dgstafsdpl shftdlsfsa alkeeqrlee illddtvspf gtdpllssts
      421 paaskessrr ssfstddgdd l
//
LOCUS       XP_053912111             228 aa            linear   VRT 09-MAR-2023
DEFINITION  claudin-10 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912111
VERSION     XP_053912111.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056136.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..228
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..228
                     /product="claudin-10 isoform X1"
                     /calculated_mol_wt=24170
     Region          7..179
                     /region_name="PMP22_Claudin"
                     /note="PMP-22/EMP/MP20/Claudin family; cl21598"
                     /db_xref="CDD:473919"
     CDS             1..228
                     /gene="CLDN10"
                     /coded_by="XM_054056136.1:253..939"
                     /db_xref="GeneID:104054873"
ORIGIN      
        1 mastsaeiia flltisgwvl vsstlptdyw kvstidgtvi ttatfwanlw ktcvtdstgv
       61 snckdfpsml aldgyiqacr glmisavclg ffgavfglvg mkctkvggsd qtkakiacla
      121 glifilsglc smtscslyan ritseffdps fvaqkyelga alfigwagas lciiggsifc
      181 fsiaensntp rrgyayngaa svmssrtkvh nsvpdktppk hfdknayv
//
LOCUS       XP_053912112             226 aa            linear   VRT 09-MAR-2023
DEFINITION  claudin-10 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912112
VERSION     XP_053912112.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056137.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..226
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..226
                     /product="claudin-10 isoform X2"
                     /calculated_mol_wt=23939
     Region          3..177
                     /region_name="PMP22_Claudin"
                     /note="PMP-22/EMP/MP20/Claudin family; cl21598"
                     /db_xref="CDD:473919"
     CDS             1..226
                     /gene="CLDN10"
                     /coded_by="XM_054056137.1:56..736"
                     /db_xref="GeneID:104054873"
ORIGIN      
        1 mlgiqiiafi fcfcglgaai aatasnewkv tsrassvita twvfqglwmn cagnalgafh
       61 crphltifkv egyiqacrgl misavclgff gavfglvgmk ctkvggsdqt kakiaclagl
      121 ifilsglcsm tscslyanri tseffdpsfv aqkyelgaal figwagaslc iiggsifcfs
      181 iaensntprr gyayngaasv mssrtkvhns vpdktppkhf dknayv
//
LOCUS       XP_053912114             396 aa            linear   VRT 09-MAR-2023
DEFINITION  actin-related protein 6 [Cuculus canorus].
ACCESSION   XP_053912114
VERSION     XP_053912114.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056139.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..396
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..396
                     /product="actin-related protein 6"
                     /calculated_mol_wt=45666
     Region          3..386
                     /region_name="ASKHA_NBD_Arp6"
                     /note="nucleotide-binding domain (NBD) of actin-related
                     protein6 (Arp6) and similar proteins; cd10210"
                     /db_xref="CDD:466816"
     CDS             1..396
                     /gene="ACTR6"
                     /coded_by="XM_054056139.1:782..1972"
                     /db_xref="GeneID:104055196"
ORIGIN      
        1 matlvldnga ynakigysha nvsvipncqf rsktarlktf tanqldeikd psglfyilpf
       61 qkgylvnwdv qrqvwdylfg kemykvdfvd tniiitepyf nfssiqesmn eilfeeyqfq
      121 avlrvnagal sahryfrdnp selcciivds gysfthivpy crskkkkeai irinvggkll
      181 tnhlkeiisy rqlhvmdeth vinqvkedvc yvsqdfykdm diaklkgeen tvmvdyvlpd
      241 fstikkgfck preemvlsgk yktgeqilrl tnerfavpei lfhpsdigiq emgipeaivy
      301 siqnlpeemq phffknivlt ggntlfpgfr drvyaevrcl tptdydvsvv lpenpitysw
      361 eggklisend dfedmvvtre dyeehghnic eekfdi
//
LOCUS       XP_009568933             350 aa            linear   VRT 09-MAR-2023
DEFINITION  serine-threonine kinase receptor-associated protein isoform X1
            [Cuculus canorus].
ACCESSION   XP_009568933
VERSION     XP_009568933.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009570638.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..350
                     /product="serine-threonine kinase receptor-associated
                     protein isoform X1"
                     /calculated_mol_wt=37965
     Region          <4..295
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          18..57
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          104..141
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          146..181
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          187..221
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          226..262
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..350
                     /gene="STRAP"
                     /coded_by="XM_009570638.2:98..1150"
                     /db_xref="GeneID:104067843"
ORIGIN      
        1 mamrqtpltc sghtrpvvdl afsgvtpygy flisackdgk pmlrqgdtgd wigtflghkg
       61 avwgatlntd atkaataaad ftakvwdavs gdelislahk hivksvdftq dsnylltggq
      121 dkllriydls kpeaepdvvs ghtsgikkal wssddkqils addktvrlwd rstmtevkal
      181 nvamsvssme yvpegqilvi tygktiafhs aetleqiksf eapatinsas lhpakeclva
      241 ggedfklyky dyntgeeles ykghfgpihc vrfspdgely asgsedgtlr lwqttvgkty
      301 glwkcvvpee enaeaakart tlpgtaeeei eelpsensdt vysstpevka
//
LOCUS       XP_053912115             309 aa            linear   VRT 09-MAR-2023
DEFINITION  serine-threonine kinase receptor-associated protein isoform X2
            [Cuculus canorus].
ACCESSION   XP_053912115
VERSION     XP_053912115.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056140.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..309
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..309
                     /product="serine-threonine kinase receptor-associated
                     protein isoform X2"
                     /calculated_mol_wt=33566
     Region          6..>258
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          63..100
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          105..140
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          146..180
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          185..221
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..309
                     /gene="STRAP"
                     /coded_by="XM_054056140.1:123..1052"
                     /db_xref="GeneID:104067843"
ORIGIN      
        1 mlrqgdtgdw igtflghkga vwgatlntda tkaataaadf takvwdavsg delislahkh
       61 ivksvdftqd snylltggqd kllriydlsk peaepdvvsg htsgikkalw ssddkqilsa
      121 ddktvrlwdr stmtevkaln vamsvssmey vpegqilvit ygktiafhsa etleqiksfe
      181 apatinsasl hpakeclvag gedfklykyd yntgeelesy kghfgpihcv rfspdgelya
      241 sgsedgtlrl wqttvgktyg lwkcvvpeee naeaakartt lpgtaeeeie elpsensdtv
      301 ysstpevka
//
LOCUS       XP_053912116             529 aa            linear   VRT 09-MAR-2023
DEFINITION  frizzled-4 [Cuculus canorus].
ACCESSION   XP_053912116
VERSION     XP_053912116.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056141.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..529
                     /product="frizzled-4"
                     /calculated_mol_wt=58745
     Region          34..159
                     /region_name="CRD_FZ4"
                     /note="Cysteine-rich Wnt-binding domain of the frizzled 4
                     (Fz4) receptor; cd07448"
                     /db_xref="CDD:143557"
     Site            order(44,46..48,50..52)
                     /site_type="other"
                     /note="putative Wnt binding site [polypeptide binding]"
                     /db_xref="CDD:143557"
     Region          201..501
                     /region_name="7tmF_FZD4"
                     /note="class F frizzled subfamily 4, member of
                     7-transmembrane G protein-coupled receptors; cd15038"
                     /db_xref="CDD:320166"
     Site            order(202,211,261,363,368,370,373..374,379,454,457..458,
                     464,469,472..473)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:320166"
     Region          210..235
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320166"
     Region          244..265
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320166"
     Region          295..321
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320166"
     Region          338..354
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320166"
     Region          376..405
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320166"
     Region          425..452
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320166"
     Region          462..487
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320166"
     CDS             1..529
                     /gene="FZD4"
                     /coded_by="XM_054056141.1:76..1665"
                     /db_xref="GeneID:104064103"
ORIGIN      
        1 maggggasgr agllallall lllggargfg deeerrcdai riamcqnlgy nvtkmpnlvg
       61 helqadaelq lttftpliqy gcssqlqffl csvyvpmcte kinipigpcg gmclsvkrrc
      121 epvlkefgfa wpdslncskf ppqndhnhmc megpgdeevp lhsktslqpg eechsmgsns
      181 dqyiwvkrsl ncvlkcgyda glysrsakef tdiwmavwas lcfistaftv ltflidssrf
      241 syperpiifl smcyniysia yivrltvgre riscdfeeaa epvliqeglk ntgcaiifll
      301 myffgmassi wwviltltwf laaglkwghe aiemhssyfh iaawaipavk tivilimrlv
      361 dadeltglcy vgnqnldalt gfvvaplfty lvigtlfiaa glvalfkirs nlqkdgtktd
      421 klerlmvkig vfsvlytvpa tcviacyfye isnwaifrys addsnmavem lkifmsllvg
      481 itsgmwiwsa ktlhtwqkcs nrlvnsgkvk rekradgwvk pgkgnetvv
//
LOCUS       XP_053912117             116 aa            linear   VRT 09-MAR-2023
DEFINITION  dynein light chain Tctex-type 3 [Cuculus canorus].
ACCESSION   XP_053912117
VERSION     XP_053912117.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056142.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..116
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..116
                     /product="dynein light chain Tctex-type 3"
                     /calculated_mol_wt=12960
     Region          16..112
                     /region_name="DLC-like_DYNLT3"
                     /note="dynein light chain (DLC)-like domain found in
                     dynein light chain Tctex-type 3 (DYNLT3) and similar
                     proteins; cd21463"
                     /db_xref="CDD:412011"
     CDS             1..116
                     /gene="DYNLT3"
                     /coded_by="XM_054056142.1:88..438"
                     /db_xref="GeneID:104057251"
ORIGIN      
        1 meefhphnde mifnadeahn ivkeciesvl gkadynhnkv nqwtaaiveq slthlvklgk
       61 tykyivtcav mqrsgaglht asscfwdttt dgtctvrwen rtmncivnvf avaiil
//
LOCUS       XP_009564816             470 aa            linear   VRT 09-MAR-2023
DEFINITION  probable asparagine--tRNA ligase, mitochondrial isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009564816
VERSION     XP_009564816.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566521.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564816.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..470
                     /product="probable asparagine--tRNA ligase, mitochondrial
                     isoform X1"
                     /calculated_mol_wt=53118
     Region          19..467
                     /region_name="asnC"
                     /note="asparaginyl-tRNA synthetase; Validated; PRK03932"
                     /db_xref="CDD:235176"
     CDS             1..470
                     /gene="NARS2"
                     /coded_by="XM_009566521.2:45..1457"
                     /db_xref="GeneID:104064218"
ORIGIN      
        1 mlgarggwrg lrrcaslprl rvrealaare phgevqvqgw vrsvrsqkev lflhindgss
       61 lenlqvvadp slenrdltfg savevqgmlv ksphvmqnme lkagtihvvg pcdpwsfplk
      121 mkkrhpleyv rqfphlrcrs ntlgsllrir seataaihsf fqdngyvhih tpiitsndce
      181 gagelfqiet sngakesaek ahffnvpafl tvsgqlhlev magafthvft fgptfraens
      241 qsrrhlaefy mveaelsfte slqdimqvme eliktatstv lskcprdval fhkyiapaqk
      301 drleqmlknr fvtisyseav eilkqasqtf tfkpewgcdl qtehekylvk hcgevpvfvi
      361 nypydlkpfy mrdnedgpqh tvaavdllvp gvgelcggsl reerlsfles rlqrlgltda
      421 yqwyldlrkf gsvphggfgm gferylqyil gvdnikdvip fprfshscll
//
LOCUS       XP_053912118             423 aa            linear   VRT 09-MAR-2023
DEFINITION  probable asparagine--tRNA ligase, mitochondrial isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912118
VERSION     XP_053912118.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056143.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..423
                     /product="probable asparagine--tRNA ligase, mitochondrial
                     isoform X2"
                     /calculated_mol_wt=47732
     Region          19..423
                     /region_name="asnC"
                     /note="asparaginyl-tRNA synthetase; Validated; PRK03932"
                     /db_xref="CDD:235176"
     CDS             1..423
                     /gene="NARS2"
                     /coded_by="XM_054056143.1:45..1316"
                     /db_xref="GeneID:104064218"
ORIGIN      
        1 mlgarggwrg lrrcaslprl rvrealaare phgevqvqgw vrsvrsqkev lflhindgss
       61 lenlqvvadp slenrdltfg savevqgmlv ksphvmqnme lkagtihvvg pcdpwsfplk
      121 mkkrhpleyv rqfphlrcrs ntlgsllrir seataaihsf fqdngyvhih tpiitsndce
      181 gagelfqiet sngakesaek ahffnvpafl tvsgqlhlev magafthvft fgptfraens
      241 qsrrhlaefy mveaelsfte slqdimqvme eliktatstv lskcprdval fhkyiapaqk
      301 drleqmlknr fvtisyseav eilkqasqtf tfkpewgcdl qtehekylvk hcgevpvfvi
      361 nypydlkpfy mrdnedgpqh tvaavdllvp gvgelcggsl reerlsfles rlqrlgltda
      421 yqw
//
LOCUS       XP_053912119             422 aa            linear   VRT 09-MAR-2023
DEFINITION  testin isoform X1 [Cuculus canorus].
ACCESSION   XP_053912119
VERSION     XP_053912119.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056144.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..422
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..422
                     /product="testin isoform X1"
                     /calculated_mol_wt=47915
     Region          109..196
                     /region_name="PET_testin"
                     /note="The PET domain of Testin; cd09829"
                     /db_xref="CDD:193604"
     Region          236..293
                     /region_name="LIM1_Testin"
                     /note="The first LIM domain of Testin; cd09413"
                     /db_xref="CDD:188797"
     Site            order(236,239,262,265,268,271,289,292)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188797"
     Region          299..354
                     /region_name="LIM2_Testin"
                     /note="The second LIM domain of Testin; cd09416"
                     /db_xref="CDD:188800"
     Site            order(301,304,322,325,328,331,349,352)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188800"
     Region          361..419
                     /region_name="LIM3_Testin"
                     /note="The third LIM domain of Testin; cd09419"
                     /db_xref="CDD:188803"
     Site            order(361,364,383,388,391,394,412,416)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188803"
     CDS             1..422
                     /gene="TES"
                     /coded_by="XM_054056144.1:185..1453"
                     /db_xref="GeneID:104064328"
ORIGIN      
        1 mdleskvkkm glgheqgfga pclkckdkce gfelhfwrki crnckcgqee hdvltsneed
       61 rkvgklfedt kyttliaklk ndgipmykrn vmiltnpvpa kknisintvt yewappvhnq
      121 tlarqymqml pkekqpvags egaqyrkkql akqlpahdqd pskchelspn evkqmeqfvk
      181 kyknealgvg dvklpgevet ratgknslnn dnrstsaavg amedkssdqk asqyscyrck
      241 lnmkegdpav yaeragydkl whpacfvccv csellvdmiy fwkngnlycg rhycdsekpr
      301 cagcdelifs neytqaegqn whlkhfccfd cdcvlageiy vmvndkpvck pcyvknhaai
      361 cqgchnaidp evqrvtynnf nwharqecfl csccskclig qkfmpvegmv fcsveckkkm
      421 ms
//
LOCUS       XP_053912121             413 aa            linear   VRT 09-MAR-2023
DEFINITION  testin isoform X2 [Cuculus canorus].
ACCESSION   XP_053912121
VERSION     XP_053912121.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056146.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..413
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..413
                     /product="testin isoform X2"
                     /calculated_mol_wt=46856
     Region          100..187
                     /region_name="PET_testin"
                     /note="The PET domain of Testin; cd09829"
                     /db_xref="CDD:193604"
     Region          227..284
                     /region_name="LIM1_Testin"
                     /note="The first LIM domain of Testin; cd09413"
                     /db_xref="CDD:188797"
     Site            order(227,230,253,256,259,262,280,283)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188797"
     Region          290..345
                     /region_name="LIM2_Testin"
                     /note="The second LIM domain of Testin; cd09416"
                     /db_xref="CDD:188800"
     Site            order(292,295,313,316,319,322,340,343)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188800"
     Region          352..410
                     /region_name="LIM3_Testin"
                     /note="The third LIM domain of Testin; cd09419"
                     /db_xref="CDD:188803"
     Site            order(352,355,374,379,382,385,403,407)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188803"
     CDS             1..413
                     /gene="TES"
                     /coded_by="XM_054056146.1:30..1271"
                     /db_xref="GeneID:104064328"
ORIGIN      
        1 mglgheqgfg apclkckdkc egfelhfwrk icrnckcgqe ehdvltsnee drkvgklfed
       61 tkyttliakl kndgipmykr nvmiltnpvp akknisintv tyewappvhn qtlarqymqm
      121 lpkekqpvag segaqyrkkq lakqlpahdq dpskchelsp nevkqmeqfv kkyknealgv
      181 gdvklpgeve tratgknsln ndnrstsaav gamedkssdq kasqyscyrc klnmkegdpa
      241 vyaeragydk lwhpacfvcc vcsellvdmi yfwkngnlyc grhycdsekp rcagcdelif
      301 sneytqaegq nwhlkhfccf dcdcvlagei yvmvndkpvc kpcyvknhaa icqgchnaid
      361 pevqrvtynn fnwharqecf lcsccskcli gqkfmpvegm vfcsveckkk mms
//
LOCUS       XP_053912122             292 aa            linear   VRT 09-MAR-2023
DEFINITION  chondrolectin isoform X1 [Cuculus canorus].
ACCESSION   XP_053912122
VERSION     XP_053912122.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056147.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..292
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..292
                     /product="chondrolectin isoform X1"
                     /calculated_mol_wt=31842
     Region          31..184
                     /region_name="CLECT_chondrolectin_like"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in the human type-1A transmembrane proteins chondrolectin
                     (CHODL) and layilin; cd03595"
                     /db_xref="CDD:153065"
     Site            order(146,150,152,168,170..173,176..178)
                     /site_type="other"
                     /note="ligand binding surface [chemical binding]"
                     /db_xref="CDD:153065"
     CDS             1..292
                     /gene="CHODL"
                     /coded_by="XM_054056147.1:121..999"
                     /db_xref="GeneID:104061598"
ORIGIN      
        1 mgcggavgla vlaaaamcga galagrvlsg qkvcygdfkr scyklayfqd lsrrvgfqea
       61 rqaceidgga llsleseaeq qlienmlqnl tksgsgisdg dfwiglwrsd dglatsstcp
      121 dlyqwtdgsi spfrnwytde pscgseacvv myhqptanpg lggpylyqwn ddrcnmkhnf
      181 ickygpdnvl ekelgdrtkp dydisptvsa gnpydtskpe dqyhiiatet giipnliyvv
      241 iptiplllli lvafgtccfq mlhkskgrtk tspnqstlwi sktprkdssm ev
//
LOCUS       XP_053912123             291 aa            linear   VRT 09-MAR-2023
DEFINITION  chondrolectin isoform X2 [Cuculus canorus].
ACCESSION   XP_053912123
VERSION     XP_053912123.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056148.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..291
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..291
                     /product="chondrolectin isoform X2"
                     /calculated_mol_wt=31729
     Region          31..184
                     /region_name="CLECT_chondrolectin_like"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in the human type-1A transmembrane proteins chondrolectin
                     (CHODL) and layilin; cd03595"
                     /db_xref="CDD:153065"
     Site            order(146,150,152,168,170..173,176..178)
                     /site_type="other"
                     /note="ligand binding surface [chemical binding]"
                     /db_xref="CDD:153065"
     CDS             1..291
                     /gene="CHODL"
                     /coded_by="XM_054056148.1:121..996"
                     /db_xref="GeneID:104061598"
ORIGIN      
        1 mgcggavgla vlaaaamcga galagrvlsg qkvcygdfkr scyklayfqd lsrrvgfqea
       61 rqaceidgga llsleseaeq qlienmlqnl tksgsgisdg dfwiglwrsd dglatsstcp
      121 dlyqwtdgsi spfrnwytde pscgseacvv myhqptanpg lggpylyqwn ddrcnmkhnf
      181 ickygpdnvl ekelgdrtkp dydisptvsa gnpydtskpe dqyhiiatet giipnliyvv
      241 iptiplllli lvafgtccfq mlhkrearrn cfkdpsplss eclaeslnsn l
//
LOCUS       XP_053912124             287 aa            linear   VRT 09-MAR-2023
DEFINITION  chondrolectin isoform X3 [Cuculus canorus].
ACCESSION   XP_053912124
VERSION     XP_053912124.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056149.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..287
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..287
                     /product="chondrolectin isoform X3"
                     /calculated_mol_wt=31265
     Region          31..184
                     /region_name="CLECT_chondrolectin_like"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in the human type-1A transmembrane proteins chondrolectin
                     (CHODL) and layilin; cd03595"
                     /db_xref="CDD:153065"
     Site            order(146,150,152,168,170..173,176..178)
                     /site_type="other"
                     /note="ligand binding surface [chemical binding]"
                     /db_xref="CDD:153065"
     CDS             1..287
                     /gene="CHODL"
                     /coded_by="XM_054056149.1:121..984"
                     /db_xref="GeneID:104061598"
ORIGIN      
        1 mgcggavgla vlaaaamcga galagrvlsg qkvcygdfkr scyklayfqd lsrrvgfqea
       61 rqaceidgga llsleseaeq qlienmlqnl tksgsgisdg dfwiglwrsd dglatsstcp
      121 dlyqwtdgsi spfrnwytde pscgseacvv myhqptanpg lggpylyqwn ddrcnmkhnf
      181 ickygpdnvl ekelgdrtkp dydisptvsa gnpydtskpe dqyhiiatet giipnliyvv
      241 iptiplllli lvafgtccfq mlhkrlpqhg dlsseshnpw partcla
//
LOCUS       XP_009566874             726 aa            linear   VRT 09-MAR-2023
DEFINITION  hepatocyte growth factor isoform X1 [Cuculus canorus].
ACCESSION   XP_009566874
VERSION     XP_009566874.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568579.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..726
                     /product="hepatocyte growth factor isoform X1"
                     /calculated_mol_wt=82983
     Region          35..118
                     /region_name="PAN_AP_HGF"
                     /note="Subfamily of PAN/APPLE-like domains; present in
                     N-terminal (N) domains of plasminogen/hepatocyte growth
                     factor proteins, and various proteins found in Bilateria,
                     such as leech anti-platelet proteins. PAN/APPLE domains
                     fulfill diverse biological functions...; cd01099"
                     /db_xref="CDD:238532"
     Site            order(55,57,69)
                     /site_type="active"
                     /note="putative binding site [active]"
                     /db_xref="CDD:238532"
     Region          122..204
                     /region_name="KR"
                     /note="Kringle domain; smart00130"
                     /db_xref="CDD:214527"
     Site            133
                     /site_type="active"
                     /note="putative domain interaction site [active]"
                     /db_xref="CDD:238056"
     Site            order(148,158,184,186,194)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:238056"
     Region          206..286
                     /region_name="KR"
                     /note="Kringle domain; smart00130"
                     /db_xref="CDD:214527"
     Site            216
                     /site_type="active"
                     /note="putative domain interaction site [active]"
                     /db_xref="CDD:238056"
     Site            order(231,241,266,268,276)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:238056"
     Region          301..379
                     /region_name="Kringle"
                     /note="Kringle domain; pfam00051"
                     /db_xref="CDD:395005"
     Site            310
                     /site_type="active"
                     /note="putative domain interaction site [active]"
                     /db_xref="CDD:238056"
     Site            order(325,335,360,362,370)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:238056"
     Region          384..468
                     /region_name="KR"
                     /note="Kringle domain; Kringle domains are believed to
                     play a role in binding mediators, such as peptides, other
                     proteins, membranes, or phospholipids. They are autonomous
                     structural domains, found in a varying number of copies,
                     in blood clotting and...; cd00108"
                     /db_xref="CDD:238056"
     Site            396
                     /site_type="active"
                     /note="putative domain interaction site [active]"
                     /db_xref="CDD:238056"
     Site            order(411,423,449,451,459)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:238056"
     Region          492..716
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            493
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(532,578,673)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(667,692,694)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..726
                     /gene="HGF"
                     /coded_by="XM_009568579.2:162..2342"
                     /db_xref="GeneID:104066036"
ORIGIN      
        1 mratqllpal llhqllllpi tipvaegkgk rrnplhdfkk tgelmlikvn ktlevktkll
       61 ntteqcakrc srnkglsftc kafaydrvtk rchwlsfnsl tngvrkkqdh afdlyekkdy
      121 vrnciigkga dykgtisvtk sgiqcqawns miphehsflp ssyrgkdlre nycrnprgee
      181 ggpwcfttsp evrhevcdip lcsqvecmtc ngesyrgpmd htetgkecqr wdlqrphkhk
      241 frperypdkg fddnycrnpd gklrpwcytl dpntpwefca iktcdesivn rteaaaetlt
      301 cvqgqgegyr gtvntiwsgi lcqrwdsqfp hqhnitpenf kckdlrenyc rnpdgsespw
      361 cfttdpniri gycsqipkcd vsneqdcyrg ngksymgnls ktrfgltcst wdkniedlrr
      421 hiqifrepdv sklkknycrn pdddfhgpwc ytddplfpwd ycpisrcegd ttptttnldd
      481 tvipcastkh lrvvngiptq tnegwvvslt yrnkhicggt likeewvlta rqcfpsrykd
      541 lkdykawlgv hnikgkgeek hrqvrnisql vygpmgsdlv llklsrpail tnfveiirlp
      601 isgctipekt scsvygwgyt glinydgllr vanlfilgne kcnhylkgki tvneseicav
      661 aetigagpce rdyggplvce qnklkivvgv ivpgrgcair nrpgifvrvs yysrwihkim
      721 mtyrkp
//
LOCUS       XP_053912125             721 aa            linear   VRT 09-MAR-2023
DEFINITION  hepatocyte growth factor isoform X2 [Cuculus canorus].
ACCESSION   XP_053912125
VERSION     XP_053912125.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056150.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..721
                     /product="hepatocyte growth factor isoform X2"
                     /calculated_mol_wt=82452
     Region          35..118
                     /region_name="PAN_AP_HGF"
                     /note="Subfamily of PAN/APPLE-like domains; present in
                     N-terminal (N) domains of plasminogen/hepatocyte growth
                     factor proteins, and various proteins found in Bilateria,
                     such as leech anti-platelet proteins. PAN/APPLE domains
                     fulfill diverse biological functions...; cd01099"
                     /db_xref="CDD:238532"
     Site            order(55,57,69)
                     /site_type="active"
                     /note="putative binding site [active]"
                     /db_xref="CDD:238532"
     Region          122..199
                     /region_name="KR"
                     /note="Kringle domain; smart00130"
                     /db_xref="CDD:214527"
     Site            133
                     /site_type="active"
                     /note="putative domain interaction site [active]"
                     /db_xref="CDD:238056"
     Site            order(148,158,179,181,189)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:238056"
     Region          201..281
                     /region_name="KR"
                     /note="Kringle domain; smart00130"
                     /db_xref="CDD:214527"
     Site            211
                     /site_type="active"
                     /note="putative domain interaction site [active]"
                     /db_xref="CDD:238056"
     Site            order(226,236,261,263,271)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:238056"
     Region          296..374
                     /region_name="Kringle"
                     /note="Kringle domain; pfam00051"
                     /db_xref="CDD:395005"
     Site            305
                     /site_type="active"
                     /note="putative domain interaction site [active]"
                     /db_xref="CDD:238056"
     Site            order(320,330,355,357,365)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:238056"
     Region          379..463
                     /region_name="KR"
                     /note="Kringle domain; Kringle domains are believed to
                     play a role in binding mediators, such as peptides, other
                     proteins, membranes, or phospholipids. They are autonomous
                     structural domains, found in a varying number of copies,
                     in blood clotting and...; cd00108"
                     /db_xref="CDD:238056"
     Site            391
                     /site_type="active"
                     /note="putative domain interaction site [active]"
                     /db_xref="CDD:238056"
     Site            order(406,418,444,446,454)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:238056"
     Region          487..711
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            488
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(527,573,668)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(662,687,689)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..721
                     /gene="HGF"
                     /coded_by="XM_054056150.1:162..2327"
                     /db_xref="GeneID:104066036"
ORIGIN      
        1 mratqllpal llhqllllpi tipvaegkgk rrnplhdfkk tgelmlikvn ktlevktkll
       61 ntteqcakrc srnkglsftc kafaydrvtk rchwlsfnsl tngvrkkqdh afdlyekkdy
      121 vrnciigkga dykgtisvtk sgiqcqawns miphehsyrg kdlrenycrn prgeeggpwc
      181 fttspevrhe vcdiplcsqv ecmtcngesy rgpmdhtetg kecqrwdlqr phkhkfrper
      241 ypdkgfddny crnpdgklrp wcytldpntp wefcaiktcd esivnrteaa aetltcvqgq
      301 gegyrgtvnt iwsgilcqrw dsqfphqhni tpenfkckdl renycrnpdg sespwcfttd
      361 pnirigycsq ipkcdvsneq dcyrgngksy mgnlsktrfg ltcstwdkni edlrrhiqif
      421 repdvsklkk nycrnpdddf hgpwcytddp lfpwdycpis rcegdttptt tnlddtvipc
      481 astkhlrvvn giptqtnegw vvsltyrnkh icggtlikee wvltarqcfp srykdlkdyk
      541 awlgvhnikg kgeekhrqvr nisqlvygpm gsdlvllkls rpailtnfve iirlpisgct
      601 ipektscsvy gwgytgliny dgllrvanlf ilgnekcnhy lkgkitvnes eicavaetig
      661 agpcerdygg plvceqnklk ivvgvivpgr gcairnrpgi fvrvsyysrw ihkimmtyrk
      721 p
//
LOCUS       XP_053912126             720 aa            linear   VRT 09-MAR-2023
DEFINITION  hepatocyte growth factor isoform X3 [Cuculus canorus].
ACCESSION   XP_053912126
VERSION     XP_053912126.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056151.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..720
                     /product="hepatocyte growth factor isoform X3"
                     /calculated_mol_wt=82302
     Region          35..118
                     /region_name="PAN_AP_HGF"
                     /note="Subfamily of PAN/APPLE-like domains; present in
                     N-terminal (N) domains of plasminogen/hepatocyte growth
                     factor proteins, and various proteins found in Bilateria,
                     such as leech anti-platelet proteins. PAN/APPLE domains
                     fulfill diverse biological functions...; cd01099"
                     /db_xref="CDD:238532"
     Site            order(55,57,69)
                     /site_type="active"
                     /note="putative binding site [active]"
                     /db_xref="CDD:238532"
     Region          122..204
                     /region_name="KR"
                     /note="Kringle domain; smart00130"
                     /db_xref="CDD:214527"
     Site            133
                     /site_type="active"
                     /note="putative domain interaction site [active]"
                     /db_xref="CDD:238056"
     Site            order(148,158,184,186,194)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:238056"
     Region          206..286
                     /region_name="KR"
                     /note="Kringle domain; smart00130"
                     /db_xref="CDD:214527"
     Site            216
                     /site_type="active"
                     /note="putative domain interaction site [active]"
                     /db_xref="CDD:238056"
     Site            order(231,241,266,268,276)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:238056"
     Region          301..379
                     /region_name="Kringle"
                     /note="Kringle domain; pfam00051"
                     /db_xref="CDD:395005"
     Site            310
                     /site_type="active"
                     /note="putative domain interaction site [active]"
                     /db_xref="CDD:238056"
     Site            order(325,335,360,362,370)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:238056"
     Region          384..468
                     /region_name="KR"
                     /note="Kringle domain; Kringle domains are believed to
                     play a role in binding mediators, such as peptides, other
                     proteins, membranes, or phospholipids. They are autonomous
                     structural domains, found in a varying number of copies,
                     in blood clotting and...; cd00108"
                     /db_xref="CDD:238056"
     Site            396
                     /site_type="active"
                     /note="putative domain interaction site [active]"
                     /db_xref="CDD:238056"
     Site            order(411,423,449,451,459)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:238056"
     Region          492..>670
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            493
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     CDS             1..720
                     /gene="HGF"
                     /coded_by="XM_054056151.1:163..2325"
                     /db_xref="GeneID:104066036"
ORIGIN      
        1 mratqllpal llhqllllpi tipvaegkgk rrnplhdfkk tgelmlikvn ktlevktkll
       61 ntteqcakrc srnkglsftc kafaydrvtk rchwlsfnsl tngvrkkqdh afdlyekkdy
      121 vrnciigkga dykgtisvtk sgiqcqawns miphehsflp ssyrgkdlre nycrnprgee
      181 ggpwcfttsp evrhevcdip lcsqvecmtc ngesyrgpmd htetgkecqr wdlqrphkhk
      241 frperypdkg fddnycrnpd gklrpwcytl dpntpwefca iktcdesivn rteaaaetlt
      301 cvqgqgegyr gtvntiwsgi lcqrwdsqfp hqhnitpenf kckdlrenyc rnpdgsespw
      361 cfttdpniri gycsqipkcd vsneqdcyrg ngksymgnls ktrfgltcst wdkniedlrr
      421 hiqifrepdv sklkknycrn pdddfhgpwc ytddplfpwd ycpisrcegd ttptttnldd
      481 tvipcastkh lrvvngiptq tnegwvvslt yrnkhicggt likeewvlta rqcfpsrykd
      541 lkdykawlgv hnikgkgeek hrqvrnisql vygpmgsdlv llklsrpail tnfveiirlp
      601 isgctipekt scsvygwgyt glinydgllr vanlfilgne kcnhylkgki tvneseicav
      661 aetigagpce eyfvianiff kikyliinel fdmsrltnet sawnstgdpa lcfslqeemg
//
LOCUS       XP_053912127             682 aa            linear   VRT 09-MAR-2023
DEFINITION  hepatocyte growth factor isoform X4 [Cuculus canorus].
ACCESSION   XP_053912127
VERSION     XP_053912127.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056152.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..682
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..682
                     /product="hepatocyte growth factor isoform X4"
                     /calculated_mol_wt=78059
     Region          1..74
                     /region_name="PAN_AP_HGF"
                     /note="Subfamily of PAN/APPLE-like domains; present in
                     N-terminal (N) domains of plasminogen/hepatocyte growth
                     factor proteins, and various proteins found in Bilateria,
                     such as leech anti-platelet proteins. PAN/APPLE domains
                     fulfill diverse biological functions...; cd01099"
                     /db_xref="CDD:238532"
     Site            order(11,13,25)
                     /site_type="active"
                     /note="putative binding site [active]"
                     /db_xref="CDD:238532"
     Region          78..160
                     /region_name="KR"
                     /note="Kringle domain; smart00130"
                     /db_xref="CDD:214527"
     Site            89
                     /site_type="active"
                     /note="putative domain interaction site [active]"
                     /db_xref="CDD:238056"
     Site            order(104,114,140,142,150)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:238056"
     Region          162..242
                     /region_name="KR"
                     /note="Kringle domain; smart00130"
                     /db_xref="CDD:214527"
     Site            172
                     /site_type="active"
                     /note="putative domain interaction site [active]"
                     /db_xref="CDD:238056"
     Site            order(187,197,222,224,232)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:238056"
     Region          257..335
                     /region_name="Kringle"
                     /note="Kringle domain; pfam00051"
                     /db_xref="CDD:395005"
     Site            266
                     /site_type="active"
                     /note="putative domain interaction site [active]"
                     /db_xref="CDD:238056"
     Site            order(281,291,316,318,326)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:238056"
     Region          340..424
                     /region_name="KR"
                     /note="Kringle domain; Kringle domains are believed to
                     play a role in binding mediators, such as peptides, other
                     proteins, membranes, or phospholipids. They are autonomous
                     structural domains, found in a varying number of copies,
                     in blood clotting and...; cd00108"
                     /db_xref="CDD:238056"
     Site            352
                     /site_type="active"
                     /note="putative domain interaction site [active]"
                     /db_xref="CDD:238056"
     Site            order(367,379,405,407,415)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:238056"
     Region          448..672
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            449
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(488,534,629)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(623,648,650)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..682
                     /gene="HGF"
                     /coded_by="XM_054056152.1:389..2437"
                     /db_xref="GeneID:104066036"
ORIGIN      
        1 mlikvnktle vktkllntte qcakrcsrnk glsftckafa ydrvtkrchw lsfnsltngv
       61 rkkqdhafdl yekkdyvrnc iigkgadykg tisvtksgiq cqawnsmiph ehsflpssyr
      121 gkdlrenycr nprgeeggpw cfttspevrh evcdiplcsq vecmtcnges yrgpmdhtet
      181 gkecqrwdlq rphkhkfrpe rypdkgfddn ycrnpdgklr pwcytldpnt pwefcaiktc
      241 desivnrtea aaetltcvqg qgegyrgtvn tiwsgilcqr wdsqfphqhn itpenfkckd
      301 lrenycrnpd gsespwcftt dpnirigycs qipkcdvsne qdcyrgngks ymgnlsktrf
      361 gltcstwdkn iedlrrhiqi frepdvsklk knycrnpddd fhgpwcytdd plfpwdycpi
      421 srcegdttpt ttnlddtvip castkhlrvv ngiptqtneg wvvsltyrnk hicggtlike
      481 ewvltarqcf psrykdlkdy kawlgvhnik gkgeekhrqv rnisqlvygp mgsdlvllkl
      541 srpailtnfv eiirlpisgc tipektscsv ygwgytglin ydgllrvanl filgnekcnh
      601 ylkgkitvne seicavaeti gagpcerdyg gplvceqnkl kivvgvivpg rgcairnrpg
      661 ifvrvsyysr wihkimmtyr kp
//
LOCUS       XP_053912128             682 aa            linear   VRT 09-MAR-2023
DEFINITION  hepatocyte growth factor isoform X4 [Cuculus canorus].
ACCESSION   XP_053912128
VERSION     XP_053912128.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056153.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..682
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..682
                     /product="hepatocyte growth factor isoform X4"
                     /calculated_mol_wt=78059
     Region          1..74
                     /region_name="PAN_AP_HGF"
                     /note="Subfamily of PAN/APPLE-like domains; present in
                     N-terminal (N) domains of plasminogen/hepatocyte growth
                     factor proteins, and various proteins found in Bilateria,
                     such as leech anti-platelet proteins. PAN/APPLE domains
                     fulfill diverse biological functions...; cd01099"
                     /db_xref="CDD:238532"
     Site            order(11,13,25)
                     /site_type="active"
                     /note="putative binding site [active]"
                     /db_xref="CDD:238532"
     Region          78..160
                     /region_name="KR"
                     /note="Kringle domain; smart00130"
                     /db_xref="CDD:214527"
     Site            89
                     /site_type="active"
                     /note="putative domain interaction site [active]"
                     /db_xref="CDD:238056"
     Site            order(104,114,140,142,150)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:238056"
     Region          162..242
                     /region_name="KR"
                     /note="Kringle domain; smart00130"
                     /db_xref="CDD:214527"
     Site            172
                     /site_type="active"
                     /note="putative domain interaction site [active]"
                     /db_xref="CDD:238056"
     Site            order(187,197,222,224,232)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:238056"
     Region          257..335
                     /region_name="Kringle"
                     /note="Kringle domain; pfam00051"
                     /db_xref="CDD:395005"
     Site            266
                     /site_type="active"
                     /note="putative domain interaction site [active]"
                     /db_xref="CDD:238056"
     Site            order(281,291,316,318,326)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:238056"
     Region          340..424
                     /region_name="KR"
                     /note="Kringle domain; Kringle domains are believed to
                     play a role in binding mediators, such as peptides, other
                     proteins, membranes, or phospholipids. They are autonomous
                     structural domains, found in a varying number of copies,
                     in blood clotting and...; cd00108"
                     /db_xref="CDD:238056"
     Site            352
                     /site_type="active"
                     /note="putative domain interaction site [active]"
                     /db_xref="CDD:238056"
     Site            order(367,379,405,407,415)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:238056"
     Region          448..672
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; smart00020"
                     /db_xref="CDD:214473"
     Site            449
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(488,534,629)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(623,648,650)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..682
                     /gene="HGF"
                     /coded_by="XM_054056153.1:194..2242"
                     /db_xref="GeneID:104066036"
ORIGIN      
        1 mlikvnktle vktkllntte qcakrcsrnk glsftckafa ydrvtkrchw lsfnsltngv
       61 rkkqdhafdl yekkdyvrnc iigkgadykg tisvtksgiq cqawnsmiph ehsflpssyr
      121 gkdlrenycr nprgeeggpw cfttspevrh evcdiplcsq vecmtcnges yrgpmdhtet
      181 gkecqrwdlq rphkhkfrpe rypdkgfddn ycrnpdgklr pwcytldpnt pwefcaiktc
      241 desivnrtea aaetltcvqg qgegyrgtvn tiwsgilcqr wdsqfphqhn itpenfkckd
      301 lrenycrnpd gsespwcftt dpnirigycs qipkcdvsne qdcyrgngks ymgnlsktrf
      361 gltcstwdkn iedlrrhiqi frepdvsklk knycrnpddd fhgpwcytdd plfpwdycpi
      421 srcegdttpt ttnlddtvip castkhlrvv ngiptqtneg wvvsltyrnk hicggtlike
      481 ewvltarqcf psrykdlkdy kawlgvhnik gkgeekhrqv rnisqlvygp mgsdlvllkl
      541 srpailtnfv eiirlpisgc tipektscsv ygwgytglin ydgllrvanl filgnekcnh
      601 ylkgkitvne seicavaeti gagpcerdyg gplvceqnkl kivvgvivpg rgcairnrpg
      661 ifvrvsyysr wihkimmtyr kp
//
LOCUS       XP_053912130             630 aa            linear   VRT 09-MAR-2023
DEFINITION  hepatocyte growth factor isoform X5 [Cuculus canorus].
ACCESSION   XP_053912130
VERSION     XP_053912130.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056155.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..630
                     /product="hepatocyte growth factor isoform X5"
                     /calculated_mol_wt=72309
     Region          35..118
                     /region_name="PAN_AP_HGF"
                     /note="Subfamily of PAN/APPLE-like domains; present in
                     N-terminal (N) domains of plasminogen/hepatocyte growth
                     factor proteins, and various proteins found in Bilateria,
                     such as leech anti-platelet proteins. PAN/APPLE domains
                     fulfill diverse biological functions...; cd01099"
                     /db_xref="CDD:238532"
     Site            order(55,57,69)
                     /site_type="active"
                     /note="putative binding site [active]"
                     /db_xref="CDD:238532"
     Region          122..204
                     /region_name="KR"
                     /note="Kringle domain; smart00130"
                     /db_xref="CDD:214527"
     Site            133
                     /site_type="active"
                     /note="putative domain interaction site [active]"
                     /db_xref="CDD:238056"
     Site            order(148,158,184,186,194)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:238056"
     Region          206..286
                     /region_name="KR"
                     /note="Kringle domain; smart00130"
                     /db_xref="CDD:214527"
     Site            216
                     /site_type="active"
                     /note="putative domain interaction site [active]"
                     /db_xref="CDD:238056"
     Site            order(231,241,266,268,276)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:238056"
     Region          301..379
                     /region_name="Kringle"
                     /note="Kringle domain; pfam00051"
                     /db_xref="CDD:395005"
     Site            310
                     /site_type="active"
                     /note="putative domain interaction site [active]"
                     /db_xref="CDD:238056"
     Site            order(325,335,360,362,370)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:238056"
     Region          384..468
                     /region_name="KR"
                     /note="Kringle domain; Kringle domains are believed to
                     play a role in binding mediators, such as peptides, other
                     proteins, membranes, or phospholipids. They are autonomous
                     structural domains, found in a varying number of copies,
                     in blood clotting and...; cd00108"
                     /db_xref="CDD:238056"
     Site            396
                     /site_type="active"
                     /note="putative domain interaction site [active]"
                     /db_xref="CDD:238056"
     Site            order(411,423,449,451,459)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:238056"
     Region          492..>620
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cl21584"
                     /db_xref="CDD:473915"
     Site            493
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     CDS             1..630
                     /gene="HGF"
                     /coded_by="XM_054056155.1:163..2055"
                     /db_xref="GeneID:104066036"
ORIGIN      
        1 mratqllpal llhqllllpi tipvaegkgk rrnplhdfkk tgelmlikvn ktlevktkll
       61 ntteqcakrc srnkglsftc kafaydrvtk rchwlsfnsl tngvrkkqdh afdlyekkdy
      121 vrnciigkga dykgtisvtk sgiqcqawns miphehsflp ssyrgkdlre nycrnprgee
      181 ggpwcfttsp evrhevcdip lcsqvecmtc ngesyrgpmd htetgkecqr wdlqrphkhk
      241 frperypdkg fddnycrnpd gklrpwcytl dpntpwefca iktcdesivn rteaaaetlt
      301 cvqgqgegyr gtvntiwsgi lcqrwdsqfp hqhnitpenf kckdlrenyc rnpdgsespw
      361 cfttdpniri gycsqipkcd vsneqdcyrg ngksymgnls ktrfgltcst wdkniedlrr
      421 hiqifrepdv sklkknycrn pdddfhgpwc ytddplfpwd ycpisrcegd ttptttnldd
      481 tvipcastkh lrvvngiptq tnegwvvslt yrnkhicggt likeewvlta rqcfpsrykd
      541 lkdykawlgv hnikgkgeek hrqvrnisql vygpmgsdlv llklsrpail tnfveiirlp
      601 isgctipekt scsvygwgyt gckklflktk
//
LOCUS       XP_053912131             326 aa            linear   VRT 09-MAR-2023
DEFINITION  nucleoporin Nup37 [Cuculus canorus].
ACCESSION   XP_053912131
VERSION     XP_053912131.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056156.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..326
                     /product="nucleoporin Nup37"
                     /calculated_mol_wt=36670
     Region          22..70
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <64..322
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          76..122
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          127..163
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          169..205
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          211..241
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          299..322
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..326
                     /gene="NUP37"
                     /coded_by="XM_054056156.1:106..1086"
                     /db_xref="GeneID:104058927"
ORIGIN      
        1 mkqdstrnaa ytvdcedyvh vvkfnpfdsg dacsliaygg nnyvvvgacr fqeedaeveg
       61 mqyktlrtfq hgirvdaiaw spetrldalp pqirfctaas drklrlftsd lqdknecqtf
      121 dghsdyindl vfspkegqei asvsddhtcr vwdlegneka hfglrspgms vcwhpeeafk
      181 lmvaekngti rfydiithqi ilslkceqmp lmsadwclkn afkigavagr dwliwdvtcs
      241 sypqdkrpvh vdrarlfsws qvnenlfatt gypgktttql lihhlghpqp iltgtaavgs
      301 gltwhrtlpl cavggdhkif fwvtem
//
LOCUS       XP_053912132             326 aa            linear   VRT 09-MAR-2023
DEFINITION  nucleoporin Nup37 [Cuculus canorus].
ACCESSION   XP_053912132
VERSION     XP_053912132.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056157.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..326
                     /product="nucleoporin Nup37"
                     /calculated_mol_wt=36670
     Region          22..70
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <64..322
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          76..122
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          127..163
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          169..205
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          211..241
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          299..322
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..326
                     /gene="NUP37"
                     /coded_by="XM_054056157.1:86..1066"
                     /db_xref="GeneID:104058927"
ORIGIN      
        1 mkqdstrnaa ytvdcedyvh vvkfnpfdsg dacsliaygg nnyvvvgacr fqeedaeveg
       61 mqyktlrtfq hgirvdaiaw spetrldalp pqirfctaas drklrlftsd lqdknecqtf
      121 dghsdyindl vfspkegqei asvsddhtcr vwdlegneka hfglrspgms vcwhpeeafk
      181 lmvaekngti rfydiithqi ilslkceqmp lmsadwclkn afkigavagr dwliwdvtcs
      241 sypqdkrpvh vdrarlfsws qvnenlfatt gypgktttql lihhlghpqp iltgtaavgs
      301 gltwhrtlpl cavggdhkif fwvtem
//
LOCUS       XP_053912133             326 aa            linear   VRT 09-MAR-2023
DEFINITION  nucleoporin Nup37 [Cuculus canorus].
ACCESSION   XP_053912133
VERSION     XP_053912133.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056158.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..326
                     /product="nucleoporin Nup37"
                     /calculated_mol_wt=36670
     Region          22..70
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          <64..322
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          76..122
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          127..163
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          169..205
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          211..241
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          299..322
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..326
                     /gene="NUP37"
                     /coded_by="XM_054056158.1:78..1058"
                     /db_xref="GeneID:104058927"
ORIGIN      
        1 mkqdstrnaa ytvdcedyvh vvkfnpfdsg dacsliaygg nnyvvvgacr fqeedaeveg
       61 mqyktlrtfq hgirvdaiaw spetrldalp pqirfctaas drklrlftsd lqdknecqtf
      121 dghsdyindl vfspkegqei asvsddhtcr vwdlegneka hfglrspgms vcwhpeeafk
      181 lmvaekngti rfydiithqi ilslkceqmp lmsadwclkn afkigavagr dwliwdvtcs
      241 sypqdkrpvh vdrarlfsws qvnenlfatt gypgktttql lihhlghpqp iltgtaavgs
      301 gltwhrtlpl cavggdhkif fwvtem
//
LOCUS       XP_053912134             663 aa            linear   VRT 09-MAR-2023
DEFINITION  protein mono-ADP-ribosyltransferase PARP12 [Cuculus canorus].
ACCESSION   XP_053912134
VERSION     XP_053912134.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056159.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..663
                     /product="protein mono-ADP-ribosyltransferase PARP12"
                     /calculated_mol_wt=76610
     Region          170..195
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     Region          370..443
                     /region_name="WWE"
                     /note="WWE domain; pfam02825"
                     /db_xref="CDD:460715"
     Region          548..661
                     /region_name="TCCD_inducible_PARP_like"
                     /note="Poly(ADP-ribose) polymerases catalyse the covalent
                     attachment of ADP-ribose units from NAD+ to itself and to
                     a limited number of other DNA binding proteins, which
                     decreases their affinity for DNA. Poly(ADP-ribose)
                     polymerase is a regulatory component...; cd01439"
                     /db_xref="CDD:238719"
     Site            order(549..553,556,560,564..566,568,581..583,593,644)
                     /site_type="other"
                     /note="nad+ binding pocket [chemical binding]"
                     /db_xref="CDD:238719"
     CDS             1..663
                     /gene="LOC104058962"
                     /coded_by="XM_054056159.1:81..2072"
                     /db_xref="GeneID:104058962"
ORIGIN      
        1 mavwvpvlrv lcasggsleq gelrrrlpgg daaerleral qdshrftlsr rpgeagaeev
       61 vvvvatspvr lcqqhgagcd grcgrlhlck yhlrglcrnq qarkeckfvh nfhsdhnlnv
      121 lkqygletln gnelrqlllq ndssllpevc lhynkgdgpd gsctykkict klhvcqyflr
      181 gqcrfgssck rshdllksec yeklerqgls sdiieklpsi yrnmydikyg ntnmcdmeda
      241 kssqckerkq scsqestags ddeleqicly hlyrsccfkd kcirthfhlp yrwqiydgnt
      301 wkdlknmeei ekaycdphnt rfnnavtesg salshisfrd mccgfakvrr lstassvtkp
      361 phfilttewi wywkdenglw leygrkddvh aaatvssddl ekaylaksst klnfkagrhe
      421 yelnfgamiq knlrytterm icrrpkfvsq tevektrarg fkhtgefkgi pahwdktalp
      481 eqgfklield ssseeykkvk ldfqrtmpkt vikrisrvqn lslwelyqwq keqmqksngg
      541 rvvderflfh gtsgryidai chqnfdwric glhgtvygkg syfardasys hnyckedfft
      601 ktmfqarvlv geftigrssy vrpplkdkqn fydscvdsts npsifvifek qqiypeyliv
      661 yvd
//
LOCUS       XP_053912135             356 aa            linear   VRT 09-MAR-2023
DEFINITION  replication factor C subunit 3 [Cuculus canorus].
ACCESSION   XP_053912135
VERSION     XP_053912135.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056160.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..356
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..356
                     /product="replication factor C subunit 3"
                     /calculated_mol_wt=40248
     Region          3..345
                     /region_name="rfc"
                     /note="replication factor C small subunit; Reviewed;
                     PRK00440"
                     /db_xref="CDD:234763"
     CDS             1..356
                     /gene="RFC3"
                     /coded_by="XM_054056160.1:64..1134"
                     /db_xref="GeneID:104066158"
ORIGIN      
        1 mslwvdkhrp vslgrldyhr eqaaqlrnlv qcgdfphllv ygpsgagkkt rimcllrely
       61 gagveklrie hqsitapskk kieistiasn yhlevnpsda gnndrvviqe llktvaqsqq
      121 letstqrdfk vvvltevdkl tkdaqhalrr tmekymatcr lilccnsmsk iigpiqsrcl
      181 avrvpapste dichvlssvc kkegltlpqe laqrlaeksg rnlrkallmc escrvqqypf
      241 tadqdipemd wevylretan avvgqqtpqr llevrgrlye llthcippei imkglltell
      301 nncdgqlkge vaqmaafyeh rlqlgskaiy hleafvakfm aiykkfmedg lddmmf
//
LOCUS       XP_053912136             693 aa            linear   VRT 09-MAR-2023
DEFINITION  vitamin K-dependent protein S isoform X1 [Cuculus canorus].
ACCESSION   XP_053912136
VERSION     XP_053912136.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056161.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..693
                     /product="vitamin K-dependent protein S isoform X1"
                     /calculated_mol_wt=76606
     Region          27..86
                     /region_name="GLA"
                     /note="Domain containing Gla (gamma-carboxyglutamate)
                     residues; smart00069"
                     /db_xref="CDD:214503"
     Region          120..156
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; cd00054"
                     /db_xref="CDD:238011"
     Region          162..197
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          199..240
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain; smart00179"
                     /db_xref="CDD:214542"
     Site            order(199,202,217)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238011"
     Region          <239..279
                     /region_name="vWFA"
                     /note="Von Willebrand factor type A (vWA) domain was
                     originally found in the blood coagulation protein von
                     Willebrand factor (vWF). Typically, the vWA domain is made
                     up of approximately 200 amino acid residues folded into a
                     classic a/b para-rossmann type of...; cl00057"
                     /db_xref="CDD:469594"
     Region          328..458
                     /region_name="Laminin_G_1"
                     /note="Laminin G domain; pfam00054"
                     /db_xref="CDD:395008"
     Region          508..669
                     /region_name="LamG"
                     /note="Laminin G domain; Laminin G-like domains are
                     usually Ca++ mediated receptors that can have binding
                     sites for steroids, beta1 integrins, heparin, sulfatides,
                     fibulin-1, and alpha-dystroglycans. Proteins that contain
                     LamG domains serve a variety of...; cl22861"
                     /db_xref="CDD:473984"
     CDS             1..693
                     /gene="PROS1"
                     /coded_by="XM_054056161.1:52..2133"
                     /db_xref="GeneID:104056014"
ORIGIN      
        1 mgprgrrclp llaglvvava laeaatflsq qyasqfllrk rransfmees kkgnlereci
       61 eelcnkeear eifennpete yfypkylscl ashragvfri tastpdspag lracvneisn
      121 qcsplpchrd gykdcidgqa kytcvcksgw qgekceedin ecedlnggcs qrcsnfpgsy
      181 rclcedgyfm hsnkrdcgdi necvlhpnic gtaickntlg rydcecaegy tynrtsksce
      241 didecaenvc aqlcvnspgs yscycdgkkg fklskdmknc esvtactpln leknyellyl
      301 aeqfvgipvl ylkfklpnvt rftaefdfrt ydaegvilya esldsaswil lalrdgkiei
      361 qfknelgtkv tsggkaindg lwhiisveel ehsisvkiak eavmsinspg tlfkqsqgfl
      421 etkvyiaglp rkvgntlvkq inprldgcir awnlmnqghs gvkeviqekq skhclvaver
      481 gsfypgtgma kfqinynnld saedwlinvt mtirpsadtg vmfalvsnet vplalsivds
      541 nsadsqkiia tignitvaql eskklctprk vlvglvvtkq qlelsvdsht drsnpeqlsi
      601 lrqammgnvv tylgglpdnq vssiqiesve weectngtvp sytatdvplg aalvtafyng
      661 cmevkvnnrq ldldeaiskh ndirshscpl iml
//
LOCUS       XP_053912138             686 aa            linear   VRT 09-MAR-2023
DEFINITION  vitamin K-dependent protein S isoform X2 [Cuculus canorus].
ACCESSION   XP_053912138
VERSION     XP_053912138.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056163.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="vitamin K-dependent protein S isoform X2"
                     /calculated_mol_wt=76118
     Region          21..79
                     /region_name="GLA"
                     /note="Domain containing Gla (gamma-carboxyglutamate)
                     residues; smart00069"
                     /db_xref="CDD:214503"
     Region          113..149
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; cd00054"
                     /db_xref="CDD:238011"
     Region          155..190
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          192..233
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain; smart00179"
                     /db_xref="CDD:214542"
     Site            order(192,195,210)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238011"
     Region          <232..272
                     /region_name="vWFA"
                     /note="Von Willebrand factor type A (vWA) domain was
                     originally found in the blood coagulation protein von
                     Willebrand factor (vWF). Typically, the vWA domain is made
                     up of approximately 200 amino acid residues folded into a
                     classic a/b para-rossmann type of...; cl00057"
                     /db_xref="CDD:469594"
     Region          321..451
                     /region_name="Laminin_G_1"
                     /note="Laminin G domain; pfam00054"
                     /db_xref="CDD:395008"
     Region          501..662
                     /region_name="LamG"
                     /note="Laminin G domain; Laminin G-like domains are
                     usually Ca++ mediated receptors that can have binding
                     sites for steroids, beta1 integrins, heparin, sulfatides,
                     fibulin-1, and alpha-dystroglycans. Proteins that contain
                     LamG domains serve a variety of...; cl22861"
                     /db_xref="CDD:473984"
     CDS             1..686
                     /gene="PROS1"
                     /coded_by="XM_054056163.1:70..2130"
                     /db_xref="GeneID:104056014"
ORIGIN      
        1 mflrestskl qllsttvvlv lsqqyasqfl lrkrransfm eeskkgnler ecieelcnke
       61 eareifennp eteyfypkyl sclashragv fritastpds paglracvne isnqcsplpc
      121 hrdgykdcid gqakytcvck sgwqgekcee dinecedlng gcsqrcsnfp gsyrclcedg
      181 yfmhsnkrdc gdinecvlhp nicgtaickn tlgrydceca egytynrtsk scedidecae
      241 nvcaqlcvns pgsyscycdg kkgfklskdm kncesvtact plnleknyel lylaeqfvgi
      301 pvlylkfklp nvtrftaefd frtydaegvi lyaesldsas willalrdgk ieiqfknelg
      361 tkvtsggkai ndglwhiisv eelehsisvk iakeavmsin spgtlfkqsq gfletkvyia
      421 glprkvgntl vkqinprldg cirawnlmnq ghsgvkeviq ekqskhclva vergsfypgt
      481 gmakfqinyn nldsaedwli nvtmtirpsa dtgvmfalvs netvplalsi vdsnsadsqk
      541 iiatignitv aqleskklct prkvlvglvv tkqqlelsvd shtdrsnpeq lsilrqammg
      601 nvvtylgglp dnqvssiqie sveweectng tvpsytatdv plgaalvtaf yngcmevkvn
      661 nrqldldeai skhndirshs cpliml
//
LOCUS       XP_053912139             665 aa            linear   VRT 09-MAR-2023
DEFINITION  vitamin K-dependent protein S isoform X3 [Cuculus canorus].
ACCESSION   XP_053912139
VERSION     XP_053912139.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056164.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..665
                     /product="vitamin K-dependent protein S isoform X3"
                     /calculated_mol_wt=73535
     Region          27..86
                     /region_name="GLA"
                     /note="Domain containing Gla (gamma-carboxyglutamate)
                     residues; smart00069"
                     /db_xref="CDD:214503"
     Region          120..156
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; cd00054"
                     /db_xref="CDD:238011"
     Region          162..197
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          199..240
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain; smart00179"
                     /db_xref="CDD:214542"
     Site            order(199,202,217)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238011"
     Region          <239..279
                     /region_name="vWFA"
                     /note="Von Willebrand factor type A (vWA) domain was
                     originally found in the blood coagulation protein von
                     Willebrand factor (vWF). Typically, the vWA domain is made
                     up of approximately 200 amino acid residues folded into a
                     classic a/b para-rossmann type of...; cl00057"
                     /db_xref="CDD:469594"
     Region          328..458
                     /region_name="Laminin_G_1"
                     /note="Laminin G domain; pfam00054"
                     /db_xref="CDD:395008"
     Region          513..641
                     /region_name="Laminin_G_2"
                     /note="Laminin G domain; pfam02210"
                     /db_xref="CDD:460494"
     CDS             1..665
                     /gene="PROS1"
                     /coded_by="XM_054056164.1:52..2049"
                     /db_xref="GeneID:104056014"
ORIGIN      
        1 mgprgrrclp llaglvvava laeaatflsq qyasqfllrk rransfmees kkgnlereci
       61 eelcnkeear eifennpete yfypkylscl ashragvfri tastpdspag lracvneisn
      121 qcsplpchrd gykdcidgqa kytcvcksgw qgekceedin ecedlnggcs qrcsnfpgsy
      181 rclcedgyfm hsnkrdcgdi necvlhpnic gtaickntlg rydcecaegy tynrtsksce
      241 didecaenvc aqlcvnspgs yscycdgkkg fklskdmknc esvtactpln leknyellyl
      301 aeqfvgipvl ylkfklpnvt rftaefdfrt ydaegvilya esldsaswil lalrdgkiei
      361 qfknelgtkv tsggkaindg lwhiisveel ehsisvkiak eavmsinspg tlfkqsqgfl
      421 etkvyiaglp rkvgntlvkq inprldgcir awnlmnqghs gvkeviqekq skhclvaver
      481 gsfypgtgma kfqinynnld saedwlinvt mtirpsadtg vmfalvsnet vplalsivds
      541 nsadsqkiia tignitvaql eskklctprk vlvglvvtkq qlelsvdsht drsnpeqlsi
      601 lrqammgnvv tylgglpdvp lgaalvtafy ngcmevkvnn rqldldeais khndirshsc
      661 pliml
//
LOCUS       XP_053912140             647 aa            linear   VRT 09-MAR-2023
DEFINITION  vitamin K-dependent protein S isoform X4 [Cuculus canorus].
ACCESSION   XP_053912140
VERSION     XP_053912140.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056165.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..647
                     /product="vitamin K-dependent protein S isoform X4"
                     /calculated_mol_wt=71575
     Region          2..40
                     /region_name="Gla"
                     /note="Vitamin K-dependent
                     carboxylation/gamma-carboxyglutamic (GLA) domain;
                     pfam00594"
                     /db_xref="CDD:459861"
     Region          74..110
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; cd00054"
                     /db_xref="CDD:238011"
     Region          116..151
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          153..194
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain; smart00179"
                     /db_xref="CDD:214542"
     Site            order(153,156,171)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238011"
     Region          <193..233
                     /region_name="vWFA"
                     /note="Von Willebrand factor type A (vWA) domain was
                     originally found in the blood coagulation protein von
                     Willebrand factor (vWF). Typically, the vWA domain is made
                     up of approximately 200 amino acid residues folded into a
                     classic a/b para-rossmann type of...; cl00057"
                     /db_xref="CDD:469594"
     Region          282..412
                     /region_name="Laminin_G_1"
                     /note="Laminin G domain; pfam00054"
                     /db_xref="CDD:395008"
     Region          462..623
                     /region_name="LamG"
                     /note="Laminin G domain; Laminin G-like domains are
                     usually Ca++ mediated receptors that can have binding
                     sites for steroids, beta1 integrins, heparin, sulfatides,
                     fibulin-1, and alpha-dystroglycans. Proteins that contain
                     LamG domains serve a variety of...; cl22861"
                     /db_xref="CDD:473984"
     CDS             1..647
                     /gene="PROS1"
                     /coded_by="XM_054056165.1:181..2124"
                     /db_xref="GeneID:104056014"
ORIGIN      
        1 meeskkgnle recieelcnk eeareifenn peteyfypky lsclashrag vfritastpd
       61 spaglracvn eisnqcsplp chrdgykdci dgqakytcvc ksgwqgekce edinecedln
      121 ggcsqrcsnf pgsyrclced gyfmhsnkrd cgdinecvlh pnicgtaick ntlgrydcec
      181 aegytynrts kscedideca envcaqlcvn spgsyscycd gkkgfklskd mkncesvtac
      241 tplnleknye llylaeqfvg ipvlylkfkl pnvtrftaef dfrtydaegv ilyaesldsa
      301 swillalrdg kieiqfknel gtkvtsggka indglwhiis veelehsisv kiakeavmsi
      361 nspgtlfkqs qgfletkvyi aglprkvgnt lvkqinprld gcirawnlmn qghsgvkevi
      421 qekqskhclv avergsfypg tgmakfqiny nnldsaedwl invtmtirps adtgvmfalv
      481 snetvplals ivdsnsadsq kiiatignit vaqleskklc tprkvlvglv vtkqqlelsv
      541 dshtdrsnpe qlsilrqamm gnvvtylggl pdnqvssiqi esveweectn gtvpsytatd
      601 vplgaalvta fyngcmevkv nnrqldldea iskhndirsh scpliml
//
LOCUS       XP_053912141             425 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP-ribosylation factor-like protein 13B isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912141
VERSION     XP_053912141.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056166.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..425
                     /product="ADP-ribosylation factor-like protein 13B isoform
                     X1"
                     /calculated_mol_wt=47961
     Region          23..189
                     /region_name="Arl2l1_Arl13_like"
                     /note="Arl2-like protein 1 (Arl2l1) and Arl13; cd04161"
                     /db_xref="CDD:133361"
     Site            28..35
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:133361"
     Site            order(30..36,51..52,74,130..131,133,166..168)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:133361"
     Site            order(30..31,35,39,51..58,80,85)
                     /site_type="other"
                     /note="putative GAP interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133361"
     Site            order(40..43,45..55)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:133361"
     Site            order(52..56,61,71,75,81,83..85)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133361"
     Site            52
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:133361"
     Site            order(53..60,70,81,84..85)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:133361"
     Site            order(56..62,65..70)
                     /site_type="active"
                     /note="interswitch region [active]"
                     /db_xref="CDD:133361"
     Site            71..88
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:133361"
     Site            71..74
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:133361"
     Site            130..133
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:133361"
     Site            166..168
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:133361"
     CDS             1..425
                     /gene="ARL13B"
                     /coded_by="XM_054056166.1:327..1604"
                     /db_xref="GeneID:104055968"
ORIGIN      
        1 mfslmanccs wlkrwqepir kvtlimvgld nagktatvrg iqgespedva ptvgfskidl
       61 kqgrfevtif dlgggkrirn iwrnyyaesy gvifvvdssd varmeetkqa mievlnspki
      121 sgkpvlvlan kqdregalse advieslsle klvnehkclc qiepcsaimg cgkkidksik
      181 kglywllhii akdfdalner iqrdtteqka yeeqkklera ervrkireer ereegrnvpd
      241 eedaepgnse npfqpisavi senekkieme kkrqrletek ativlksqte qeqmdaqhls
      301 ssssqstndg rletcnsttt ellqpeener qasecldsdn skkknkkpkl krshrvepvn
      361 aedavpknpt pppalppvgw gtpklnrlrk leplgethha dfygkplppl tirqrpnsdt
      421 hdvia
//
LOCUS       XP_053912142             402 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP-ribosylation factor-like protein 13B isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912142
VERSION     XP_053912142.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056167.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..402
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..402
                     /product="ADP-ribosylation factor-like protein 13B isoform
                     X2"
                     /calculated_mol_wt=45298
     Region          23..189
                     /region_name="Arl2l1_Arl13_like"
                     /note="Arl2-like protein 1 (Arl2l1) and Arl13; cd04161"
                     /db_xref="CDD:133361"
     Site            28..35
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:133361"
     Site            order(30..36,51..52,74,130..131,133,166..168)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:133361"
     Site            order(30..31,35,39,51..58,80,85)
                     /site_type="other"
                     /note="putative GAP interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133361"
     Site            order(40..43,45..55)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:133361"
     Site            order(52..56,61,71,75,81,83..85)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133361"
     Site            52
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:133361"
     Site            order(53..60,70,81,84..85)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:133361"
     Site            order(56..62,65..70)
                     /site_type="active"
                     /note="interswitch region [active]"
                     /db_xref="CDD:133361"
     Site            71..88
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:133361"
     Site            71..74
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:133361"
     Site            130..133
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:133361"
     Site            166..168
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:133361"
     CDS             1..402
                     /gene="ARL13B"
                     /coded_by="XM_054056167.1:328..1536"
                     /db_xref="GeneID:104055968"
ORIGIN      
        1 mfslmanccs wlkrwqepir kvtlimvgld nagktatvrg iqgespedva ptvgfskidl
       61 kqgrfevtif dlgggkrirn iwrnyyaesy gvifvvdssd varmeetkqa mievlnspki
      121 sgkpvlvlan kqdregalse advieslsle klvnehkclc qiepcsaimg cgkkidksik
      181 kglywllhii akdfdalner iqrdtteqka yeeqkklera ervrkireer ereegrnvpd
      241 eedaepgnse npfqpisavi senekkieme kkrqrletek ativlksqte qeqmdaqhls
      301 ssssqstndg rletcnsttt ellqpeener qasecldsdn skkknkkpkl krshrvepvn
      361 aedavpknpt pppalppvgw gtpklnrlrk leplgethha gi
//
LOCUS       XP_053912143             400 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP-ribosylation factor-like protein 13B isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053912143
VERSION     XP_053912143.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056168.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..400
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..400
                     /product="ADP-ribosylation factor-like protein 13B isoform
                     X3"
                     /calculated_mol_wt=44924
     Region          1..164
                     /region_name="Arl2l1_Arl13_like"
                     /note="Arl2-like protein 1 (Arl2l1) and Arl13; cd04161"
                     /db_xref="CDD:133361"
     Site            3..10
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:133361"
     Site            order(5..11,26..27,49,105..106,108,141..143)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:133361"
     Site            order(5..6,10,14,26..33,55,60)
                     /site_type="other"
                     /note="putative GAP interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133361"
     Site            order(15..18,20..30)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:133361"
     Site            order(27..31,36,46,50,56,58..60)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133361"
     Site            27
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:133361"
     Site            order(28..35,45,56,59..60)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:133361"
     Site            order(31..37,40..45)
                     /site_type="active"
                     /note="interswitch region [active]"
                     /db_xref="CDD:133361"
     Site            46..63
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:133361"
     Site            46..49
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:133361"
     Site            105..108
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:133361"
     Site            141..143
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:133361"
     CDS             1..400
                     /gene="ARL13B"
                     /coded_by="XM_054056168.1:146..1348"
                     /db_xref="GeneID:104055968"
ORIGIN      
        1 mvgldnagkt atvrgiqges pedvaptvgf skidlkqgrf evtifdlggg krirniwrny
       61 yaesygvifv vdssdvarme etkqamievl nspkisgkpv lvlankqdre galseadvie
      121 slsleklvne hkclcqiepc saimgcgkki dksikkglyw llhiiakdfd alneriqrdt
      181 teqkayeeqk kleraervrk ireerereeg rnvpdeedae pgnsenpfqp isavisenek
      241 kiemekkrqr letekativl ksqteqeqmd aqhlsssssq stndgrletc nstttellqp
      301 eenerqasec ldsdnskkkn kkpklkrshr vepvnaedav pknptpppal ppvgwgtpkl
      361 nrlrkleplg ethhadfygk plppltirqr pnsdthdvia
//
LOCUS       XP_053912144             379 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP-ribosylation factor-like protein 13B isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053912144
VERSION     XP_053912144.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056169.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..379
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..379
                     /product="ADP-ribosylation factor-like protein 13B isoform
                     X4"
                     /calculated_mol_wt=42706
     Region          23..189
                     /region_name="Arl2l1_Arl13_like"
                     /note="Arl2-like protein 1 (Arl2l1) and Arl13; cd04161"
                     /db_xref="CDD:133361"
     Site            28..35
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:133361"
     Site            order(30..36,51..52,74,130..131,133,166..168)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:133361"
     Site            order(30..31,35,39,51..58,80,85)
                     /site_type="other"
                     /note="putative GAP interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133361"
     Site            order(40..43,45..55)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:133361"
     Site            order(52..56,61,71,75,81,83..85)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133361"
     Site            52
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:133361"
     Site            order(53..60,70,81,84..85)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:133361"
     Site            order(56..62,65..70)
                     /site_type="active"
                     /note="interswitch region [active]"
                     /db_xref="CDD:133361"
     Site            71..88
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:133361"
     Site            71..74
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:133361"
     Site            130..133
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:133361"
     Site            166..168
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:133361"
     CDS             1..379
                     /gene="ARL13B"
                     /coded_by="XM_054056169.1:327..1466"
                     /db_xref="GeneID:104055968"
ORIGIN      
        1 mfslmanccs wlkrwqepir kvtlimvgld nagktatvrg iqgespedva ptvgfskidl
       61 kqgrfevtif dlgggkrirn iwrnyyaesy gvifvvdssd varmeetkqa mievlnspki
      121 sgkpvlvlan kqdregalse advieslsle klvnehkclc qiepcsaimg cgkkidksik
      181 kglywllhii akdfdalner iqrdtteqka yeeqkklera ervrkireer ereegrnvpd
      241 eedaepgnse npfqpisavi senekkieme kkrqrletek ativlksqte qeqmdaqhls
      301 ssssqstndg rletcnsttt ellqpeener qasecldsdn skkknkkpkl krshrvepvn
      361 aedavpknpt pppalppgi
//
LOCUS       XP_009555460             292 aa            linear   VRT 09-MAR-2023
DEFINITION  syntaxin-19 [Cuculus canorus].
ACCESSION   XP_009555460
VERSION     XP_009555460.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557165.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..292
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..292
                     /product="syntaxin-19"
                     /calculated_mol_wt=33936
     Region          49..244
                     /region_name="Syntaxin"
                     /note="pfam00804"
                     /db_xref="CDD:459942"
     Region          212..278
                     /region_name="SNARE"
                     /note="SNARE motif; cl22856"
                     /db_xref="CDD:473982"
     Site            order(240,247,250)
                     /site_type="other"
                     /note="flanking leucine-zipper layers"
                     /db_xref="CDD:277192"
     Site            243
                     /site_type="active"
                     /note="zero layer [active]"
                     /db_xref="CDD:277192"
     CDS             1..292
                     /gene="STX19"
                     /coded_by="XM_009557165.2:842..1720"
                     /db_xref="GeneID:104055967"
ORIGIN      
        1 mkdrlqelkl rakelqiage nsgatvqeeg eeefeqqaii yekepiterh lheiqklqne
       61 innlveevhk fsqqqkslls smrrfsvlkk esniareiki qaehirkcld elsktvkkae
      121 ndhgpsratv rilasqhafl shrylnamls yndaitakqe kcrrfivrql evagkevpee
      181 evndmlqqgk weifnenllt evkitkaqls eieqrhkelv nlenqvkdlk elfiqisvlv
      241 eeqgdminni eismnntqey tqvskekfgl avkyrkrnpc kalccwccpc ck
//
LOCUS       XP_009556875             570 aa            linear   VRT 09-MAR-2023
DEFINITION  cytochrome b-245 heavy chain [Cuculus canorus].
ACCESSION   XP_009556875
VERSION     XP_009556875.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009558580.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556875.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..570
                     /product="cytochrome b-245 heavy chain"
                     /calculated_mol_wt=65158
     Region          65..220
                     /region_name="Ferric_reduct"
                     /note="Ferric reductase like transmembrane component;
                     pfam01794"
                     /db_xref="CDD:426438"
     Region          297..570
                     /region_name="NOX_Duox_like_FAD_NADP"
                     /note="NADPH oxidase (NOX) catalyzes the generation of
                     reactive oxygen species (ROS) such as superoxide and
                     hydrogen peroxide. ROS were originally identified as
                     bactericidal agents in phagocytes, but are now also
                     implicated in cell signaling and metabolism. NOX...;
                     cd06186"
                     /db_xref="CDD:99783"
     Site            order(324,338..341,354..356,359..362,411)
                     /site_type="other"
                     /note="FAD binding pocket [chemical binding]"
                     /db_xref="CDD:99783"
     Site            order(338,340..341)
                     /site_type="other"
                     /note="FAD binding motif [chemical binding]"
                     /db_xref="CDD:99783"
     Site            406..416
                     /site_type="other"
                     /note="NAD pyrophosphate binding region [chemical
                     binding]"
                     /db_xref="CDD:99783"
     Site            order(406,410..413,415)
                     /site_type="other"
                     /note="beta-alpha-beta stucture motif"
                     /db_xref="CDD:99783"
     Site            order(411..412,444..446,538..539)
                     /site_type="other"
                     /note="NAD binding pocket [chemical binding]"
                     /db_xref="CDD:99783"
     Site            order(442..443,446)
                     /site_type="other"
                     /note="NADP ribose binding motif [chemical binding]"
                     /db_xref="CDD:99783"
     CDS             1..570
                     /gene="LOC104057240"
                     /coded_by="XM_009558580.2:200..1912"
                     /db_xref="GeneID:104057240"
ORIGIN      
        1 mgnwvenegl sifvvlvwlg lnvflfwwyy lvydvppkff ytrvllgral alarapaacl
       61 nfncmlillp vcrnllsflr gssaccstri rrqldrnltf hkmvawmial htaihtiahl
      121 fnvewsvqar ieeketlaav lsglgdnphe syvnfyrkti gnpvgglyva ftylagltgv
      181 iitlalilii tsstktirrs yfevfwythh lfviffiglv ihgagrivrg qtaeslaehd
      241 pvicyknfth wgekgacpvp qfsgnppmtw kwvvgpmfly lcerlvrfwr sqqkvvitkv
      301 vihpfktiel qmmkkgfrme vgqyifvkcp avsklewhpf tltsapeedy fsihvrivgd
      361 wteglfnacg cdkqefqdaw klpkiavdgp fgtasedvfs yetvmlvgag igvtpfasvl
      421 ksvwykychd atnlklkkiy fywlcrdtqa fewfadllqs leaqmqernn aeflsyniyl
      481 tgwdesqath favhheeekd vitglkqktl ygrpnwenef ktiagqhpgs rigvflcgpe
      541 gladtlnkqs isnseadprg vhfifnkenf
//
LOCUS       XP_053912146             470 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 82 [Cuculus canorus].
ACCESSION   XP_053912146
VERSION     XP_053912146.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056171.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..470
                     /product="coiled-coil domain-containing protein 82"
                     /calculated_mol_wt=54699
     Region          58..157
                     /region_name="DUF4196"
                     /note="Domain of unknown function (DUF4196); pfam13846"
                     /db_xref="CDD:433523"
     Region          216..376
                     /region_name="DUF4211"
                     /note="Domain of unknown function (DUF4211); pfam13926"
                     /db_xref="CDD:464045"
     CDS             1..470
                     /gene="CCDC82"
                     /coded_by="XM_054056171.1:132..1544"
                     /db_xref="GeneID:104064081"
ORIGIN      
        1 meikavvrry dtrrktagte lsssksrvdw rrtkrelvll dsndessgts eeeeptased
       61 evddkddtvv tnslkdqeek shneeitedg eddcivpvkr krlnisvlyd sdesedsdil
      121 lrnvfakrhc ivdedessee qqsdktcpte nvsankkeki raklkelarq rtprtsssse
      181 ycedsndeae ieeeplchfp ltptegsetd sdsmkdfive eeegdddnta hvdsenqpqq
      241 kelntsnsel layyvpqlsr cdhyvhfkrt vkaflinaid dtflsslydg arqkryardm
      301 llslhylddr fiqprlenli arsrwkdryk ervdcypdvr ivlknqknmp cqacelkryc
      361 kfnvmlfgkl ynsrtleadd fmsddtqvlk vgvvcanrtr vyhnlkhfky klyvdcssvt
      421 esegvedepv kdtverlfsq ledsgwiqkr yndleeymdd adnfqeekme
//
LOCUS       XP_053912147             367 aa            linear   VRT 09-MAR-2023
DEFINITION  immunoglobulin superfamily member 5 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912147
VERSION     XP_053912147.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056172.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..367
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..367
                     /product="immunoglobulin superfamily member 5 isoform X1"
                     /calculated_mol_wt=40181
     Region          31..127
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          42..46
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409372"
     Region          54..57
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409372"
     Region          91..97
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409372"
     Region          130..207
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     CDS             1..367
                     /gene="IGSF5"
                     /coded_by="XM_054056172.1:363..1466"
                     /db_xref="GeneID:104059263"
ORIGIN      
        1 meriqkfilh tliltallpg fgfcysvisg ptnatvlags earfnctlss gwviliwlsn
       61 gnpvltvins qgavetsdrf tsqnytssnt ftseliihnt qlsdsgkiec stqkpnessf
      121 aflsvqvngs lfiknstltv tenktveivc ealgwapapd itwmtndsfi dksryvtqqs
      181 qgsnglhnal siltltptdt evltcladie alpnpqnatv tvifgnssie ndysedsrst
      241 wvivlavvls lvgiilliii ivvvvryccl kkkgatyqte vrkvsakkkn dgdlenrqrh
      301 gsenqgylpe erwntaqipr vtslppmssk ftvpaadlht ssapkvqhqr ptdypinpkk
      361 irnvtlv
//
LOCUS       XP_053912148             326 aa            linear   VRT 09-MAR-2023
DEFINITION  immunoglobulin superfamily member 5 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912148
VERSION     XP_053912148.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056173.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..326
                     /product="immunoglobulin superfamily member 5 isoform X2"
                     /calculated_mol_wt=35582
     Region          31..127
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          42..46
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409372"
     Region          54..57
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409372"
     Region          91..97
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409372"
     Region          130..207
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     CDS             1..326
                     /gene="IGSF5"
                     /coded_by="XM_054056173.1:363..1343"
                     /db_xref="GeneID:104059263"
ORIGIN      
        1 meriqkfilh tliltallpg fgfcysvisg ptnatvlags earfnctlss gwviliwlsn
       61 gnpvltvins qgavetsdrf tsqnytssnt ftseliihnt qlsdsgkiec stqkpnessf
      121 aflsvqvngs lfiknstltv tenktveivc ealgwapapd itwmtndsfi dksryvtqqs
      181 qgsnglhnal siltltptdt evltcladie alpnpqnatv tvifgnssie ndysedsrst
      241 wvivlavvls lvgiilliii ivvvvryccl kkkgatyqte vrkvsakkkn dgdlenrqrh
      301 gsenqgylpe erwntaqips aaskty
//
LOCUS       XP_053912149             323 aa            linear   VRT 09-MAR-2023
DEFINITION  immunoglobulin superfamily member 5 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912149
VERSION     XP_053912149.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056174.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..323
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..323
                     /product="immunoglobulin superfamily member 5 isoform X3"
                     /calculated_mol_wt=35222
     Region          31..127
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          42..46
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409372"
     Region          54..57
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409372"
     Region          91..97
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409372"
     Region          130..207
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     CDS             1..323
                     /gene="IGSF5"
                     /coded_by="XM_054056174.1:363..1334"
                     /db_xref="GeneID:104059263"
ORIGIN      
        1 meriqkfilh tliltallpg fgfcysvisg ptnatvlags earfnctlss gwviliwlsn
       61 gnpvltvins qgavetsdrf tsqnytssnt ftseliihnt qlsdsgkiec stqkpnessf
      121 aflsvqvngs lfiknstltv tenktveivc ealgwapapd itwmtndsfi dksryvtqqs
      181 qgsnglhnal siltltptdt evltcladie alpnpqnatv tvifgnssig atyqtevrkv
      241 sakkkndgdl enrqrhgsen qgylpeerwn taqiprvtsl ppmsskftvp aadlhtssap
      301 kvqhqrptdy pinpkkirnv tlv
//
LOCUS       XP_053912150             424 aa            linear   VRT 09-MAR-2023
DEFINITION  zona pellucida-like domain-containing protein 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912150
VERSION     XP_053912150.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056175.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..424
                     /product="zona pellucida-like domain-containing protein 1
                     isoform X1"
                     /calculated_mol_wt=46529
     Region          53..323
                     /region_name="Zona_pellucida"
                     /note="Zona pellucida-like domain; pfam00100"
                     /db_xref="CDD:459673"
     CDS             1..424
                     /gene="ZPLD1"
                     /coded_by="XM_054056175.1:893..2167"
                     /db_xref="GeneID:104054271"
ORIGIN      
        1 mneslpgfam eqvwlllllt ikvlsvtaqf ngyncdanlh srfpaerdin vfcgvqtitm
       61 kinfctvlfs gysetdlaln gkhgdahcrg finnntfpav vifiinlstl escgntlvvs
      121 sarginaygn tsvvqignvs gyidtpdppt iisylpglly kfscsypley lvnntqlass
      181 saaisvrenn gtfistlnll lyndstysqq llipstglpl ktkiyaavra tnldgrwnvl
      241 mdycyttpsg npsddlrydl ffscdkdpqt tiiengksqm grfsfevfrf vkhknqkmst
      301 vflhcvtklc raddcpflvp icsnrerrda ggrttwspqs tsgnavisag piitrsdetp
      361 tnnsllahpn gppfqlnsvt salisgvvil gitsifffvc slmllqrkwp nssvlsgirn
      421 pvfn
//
LOCUS       XP_053912151             424 aa            linear   VRT 09-MAR-2023
DEFINITION  zona pellucida-like domain-containing protein 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912151
VERSION     XP_053912151.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056176.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..424
                     /product="zona pellucida-like domain-containing protein 1
                     isoform X1"
                     /calculated_mol_wt=46529
     Region          53..323
                     /region_name="Zona_pellucida"
                     /note="Zona pellucida-like domain; pfam00100"
                     /db_xref="CDD:459673"
     CDS             1..424
                     /gene="ZPLD1"
                     /coded_by="XM_054056176.1:734..2008"
                     /db_xref="GeneID:104054271"
ORIGIN      
        1 mneslpgfam eqvwlllllt ikvlsvtaqf ngyncdanlh srfpaerdin vfcgvqtitm
       61 kinfctvlfs gysetdlaln gkhgdahcrg finnntfpav vifiinlstl escgntlvvs
      121 sarginaygn tsvvqignvs gyidtpdppt iisylpglly kfscsypley lvnntqlass
      181 saaisvrenn gtfistlnll lyndstysqq llipstglpl ktkiyaavra tnldgrwnvl
      241 mdycyttpsg npsddlrydl ffscdkdpqt tiiengksqm grfsfevfrf vkhknqkmst
      301 vflhcvtklc raddcpflvp icsnrerrda ggrttwspqs tsgnavisag piitrsdetp
      361 tnnsllahpn gppfqlnsvt salisgvvil gitsifffvc slmllqrkwp nssvlsgirn
      421 pvfn
//
LOCUS       XP_009553539             424 aa            linear   VRT 09-MAR-2023
DEFINITION  zona pellucida-like domain-containing protein 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009553539
VERSION     XP_009553539.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009555244.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009553539.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..424
                     /product="zona pellucida-like domain-containing protein 1
                     isoform X1"
                     /calculated_mol_wt=46529
     Region          53..323
                     /region_name="Zona_pellucida"
                     /note="Zona pellucida-like domain; pfam00100"
                     /db_xref="CDD:459673"
     CDS             1..424
                     /gene="ZPLD1"
                     /coded_by="XM_009555244.2:205..1479"
                     /db_xref="GeneID:104054271"
ORIGIN      
        1 mneslpgfam eqvwlllllt ikvlsvtaqf ngyncdanlh srfpaerdin vfcgvqtitm
       61 kinfctvlfs gysetdlaln gkhgdahcrg finnntfpav vifiinlstl escgntlvvs
      121 sarginaygn tsvvqignvs gyidtpdppt iisylpglly kfscsypley lvnntqlass
      181 saaisvrenn gtfistlnll lyndstysqq llipstglpl ktkiyaavra tnldgrwnvl
      241 mdycyttpsg npsddlrydl ffscdkdpqt tiiengksqm grfsfevfrf vkhknqkmst
      301 vflhcvtklc raddcpflvp icsnrerrda ggrttwspqs tsgnavisag piitrsdetp
      361 tnnsllahpn gppfqlnsvt salisgvvil gitsifffvc slmllqrkwp nssvlsgirn
      421 pvfn
//
LOCUS       XP_053912153             415 aa            linear   VRT 09-MAR-2023
DEFINITION  zona pellucida-like domain-containing protein 1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912153
VERSION     XP_053912153.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056178.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..415
                     /product="zona pellucida-like domain-containing protein 1
                     isoform X2"
                     /calculated_mol_wt=45582
     Region          44..314
                     /region_name="Zona_pellucida"
                     /note="Zona pellucida-like domain; pfam00100"
                     /db_xref="CDD:459673"
     CDS             1..415
                     /gene="ZPLD1"
                     /coded_by="XM_054056178.1:637..1884"
                     /db_xref="GeneID:104054271"
ORIGIN      
        1 meqvwlllll tikvlsvtaq fngyncdanl hsrfpaerdi nvfcgvqtit mkinfctvlf
       61 sgysetdlal ngkhgdahcr gfinnntfpa vvifiinlst lescgntlvv ssarginayg
      121 ntsvvqignv sgyidtpdpp tiisylpgll ykfscsyple ylvnntqlas ssaaisvren
      181 ngtfistlnl llyndstysq qllipstglp lktkiyaavr atnldgrwnv lmdycyttps
      241 gnpsddlryd lffscdkdpq ttiiengksq mgrfsfevfr fvkhknqkms tvflhcvtkl
      301 craddcpflv picsnrerrd aggrttwspq stsgnavisa gpiitrsdet ptnnsllahp
      361 ngppfqlnsv tsalisgvvi lgitsifffv cslmllqrkw pnssvlsgir npvfn
//
LOCUS       XP_053912154             415 aa            linear   VRT 09-MAR-2023
DEFINITION  zona pellucida-like domain-containing protein 1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912154
VERSION     XP_053912154.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056179.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..415
                     /product="zona pellucida-like domain-containing protein 1
                     isoform X2"
                     /calculated_mol_wt=45582
     Region          44..314
                     /region_name="Zona_pellucida"
                     /note="Zona pellucida-like domain; pfam00100"
                     /db_xref="CDD:459673"
     CDS             1..415
                     /gene="ZPLD1"
                     /coded_by="XM_054056179.1:671..1918"
                     /db_xref="GeneID:104054271"
ORIGIN      
        1 meqvwlllll tikvlsvtaq fngyncdanl hsrfpaerdi nvfcgvqtit mkinfctvlf
       61 sgysetdlal ngkhgdahcr gfinnntfpa vvifiinlst lescgntlvv ssarginayg
      121 ntsvvqignv sgyidtpdpp tiisylpgll ykfscsyple ylvnntqlas ssaaisvren
      181 ngtfistlnl llyndstysq qllipstglp lktkiyaavr atnldgrwnv lmdycyttps
      241 gnpsddlryd lffscdkdpq ttiiengksq mgrfsfevfr fvkhknqkms tvflhcvtkl
      301 craddcpflv picsnrerrd aggrttwspq stsgnavisa gpiitrsdet ptnnsllahp
      361 ngppfqlnsv tsalisgvvi lgitsifffv cslmllqrkw pnssvlsgir npvfn
//
LOCUS       XP_009555600             243 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptophysin-like protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_009555600
VERSION     XP_009555600.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557305.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555600.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..243
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..243
                     /product="synaptophysin-like protein 1 isoform X1"
                     /calculated_mol_wt=26603
     Region          11..210
                     /region_name="MARVEL"
                     /note="Membrane-associating domain; pfam01284"
                     /db_xref="CDD:366555"
     CDS             1..243
                     /gene="SYPL1"
                     /coded_by="XM_009557305.2:364..1095"
                     /db_xref="GeneID:104056095"
ORIGIN      
        1 maglrvdfal lleplgfikv lewifsifaf atcggfqget rllvscegva nktvtaafay
       61 pfrlntvafs apdpkrcggt wtdvylvgnf sssaqffvtl avlvflycia alvvyigykh
      121 vyqqnsklpl sdlaitvita flwlvstsaw akaladikis tgpsiisgie fckapgttch
      181 fasvssmrtl nvsvvfglln malwagniwf vykdtnlhnn ptgflkvqey nqlkeecknk
      241 vif
//
LOCUS       XP_053912155             243 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptophysin-like protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912155
VERSION     XP_053912155.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056180.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..243
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..243
                     /product="synaptophysin-like protein 1 isoform X1"
                     /calculated_mol_wt=26603
     Region          11..210
                     /region_name="MARVEL"
                     /note="Membrane-associating domain; pfam01284"
                     /db_xref="CDD:366555"
     CDS             1..243
                     /gene="SYPL1"
                     /coded_by="XM_054056180.1:284..1015"
                     /db_xref="GeneID:104056095"
ORIGIN      
        1 maglrvdfal lleplgfikv lewifsifaf atcggfqget rllvscegva nktvtaafay
       61 pfrlntvafs apdpkrcggt wtdvylvgnf sssaqffvtl avlvflycia alvvyigykh
      121 vyqqnsklpl sdlaitvita flwlvstsaw akaladikis tgpsiisgie fckapgttch
      181 fasvssmrtl nvsvvfglln malwagniwf vykdtnlhnn ptgflkvqey nqlkeecknk
      241 vif
//
LOCUS       XP_053912156             237 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptophysin-like protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912156
VERSION     XP_053912156.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056181.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..237
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..237
                     /product="synaptophysin-like protein 1 isoform X2"
                     /calculated_mol_wt=26028
     Region          78..204
                     /region_name="MARVEL"
                     /note="Membrane-associating domain; pfam01284"
                     /db_xref="CDD:366555"
     CDS             1..237
                     /gene="SYPL1"
                     /coded_by="XM_054056181.1:3615..4328"
                     /db_xref="GeneID:104056095"
ORIGIN      
        1 mkflkrekia pcflpsplav llpsffakvl ayilhsstlv cpevpleedv vnqsaevlnt
       61 vafsapdpkr cggtwtdvyl vgnfsssaqf fvtlavlvfl yciaalvvyi gykhvyqqns
      121 klplsdlait vitaflwlvs tsawakalad ikistgpsii sgiefckapg ttchfasvss
      181 mrtlnvsvvf gllnmalwag niwfvykdtn lhnnptgflk vqeynqlkee cknkvif
//
LOCUS       XP_053912157             237 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptophysin-like protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912157
VERSION     XP_053912157.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056182.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..237
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..237
                     /product="synaptophysin-like protein 1 isoform X2"
                     /calculated_mol_wt=26028
     Region          78..204
                     /region_name="MARVEL"
                     /note="Membrane-associating domain; pfam01284"
                     /db_xref="CDD:366555"
     CDS             1..237
                     /gene="SYPL1"
                     /coded_by="XM_054056182.1:3654..4367"
                     /db_xref="GeneID:104056095"
ORIGIN      
        1 mkflkrekia pcflpsplav llpsffakvl ayilhsstlv cpevpleedv vnqsaevlnt
       61 vafsapdpkr cggtwtdvyl vgnfsssaqf fvtlavlvfl yciaalvvyi gykhvyqqns
      121 klplsdlait vitaflwlvs tsawakalad ikistgpsii sgiefckapg ttchfasvss
      181 mrtlnvsvvf gllnmalwag niwfvykdtn lhnnptgflk vqeynqlkee cknkvif
//
LOCUS       XP_053912158             237 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptophysin-like protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912158
VERSION     XP_053912158.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056183.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..237
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..237
                     /product="synaptophysin-like protein 1 isoform X2"
                     /calculated_mol_wt=26028
     Region          78..204
                     /region_name="MARVEL"
                     /note="Membrane-associating domain; pfam01284"
                     /db_xref="CDD:366555"
     CDS             1..237
                     /gene="SYPL1"
                     /coded_by="XM_054056183.1:3577..4290"
                     /db_xref="GeneID:104056095"
ORIGIN      
        1 mkflkrekia pcflpsplav llpsffakvl ayilhsstlv cpevpleedv vnqsaevlnt
       61 vafsapdpkr cggtwtdvyl vgnfsssaqf fvtlavlvfl yciaalvvyi gykhvyqqns
      121 klplsdlait vitaflwlvs tsawakalad ikistgpsii sgiefckapg ttchfasvss
      181 mrtlnvsvvf gllnmalwag niwfvykdtn lhnnptgflk vqeynqlkee cknkvif
//
LOCUS       XP_053912159             237 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptophysin-like protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912159
VERSION     XP_053912159.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056184.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..237
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..237
                     /product="synaptophysin-like protein 1 isoform X2"
                     /calculated_mol_wt=26028
     Region          78..204
                     /region_name="MARVEL"
                     /note="Membrane-associating domain; pfam01284"
                     /db_xref="CDD:366555"
     CDS             1..237
                     /gene="SYPL1"
                     /coded_by="XM_054056184.1:3574..4287"
                     /db_xref="GeneID:104056095"
ORIGIN      
        1 mkflkrekia pcflpsplav llpsffakvl ayilhsstlv cpevpleedv vnqsaevlnt
       61 vafsapdpkr cggtwtdvyl vgnfsssaqf fvtlavlvfl yciaalvvyi gykhvyqqns
      121 klplsdlait vitaflwlvs tsawakalad ikistgpsii sgiefckapg ttchfasvss
      181 mrtlnvsvvf gllnmalwag niwfvykdtn lhnnptgflk vqeynqlkee cknkvif
//
LOCUS       XP_053912160             237 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptophysin-like protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912160
VERSION     XP_053912160.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056185.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..237
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..237
                     /product="synaptophysin-like protein 1 isoform X2"
                     /calculated_mol_wt=26028
     Region          78..204
                     /region_name="MARVEL"
                     /note="Membrane-associating domain; pfam01284"
                     /db_xref="CDD:366555"
     CDS             1..237
                     /gene="SYPL1"
                     /coded_by="XM_054056185.1:3454..4167"
                     /db_xref="GeneID:104056095"
ORIGIN      
        1 mkflkrekia pcflpsplav llpsffakvl ayilhsstlv cpevpleedv vnqsaevlnt
       61 vafsapdpkr cggtwtdvyl vgnfsssaqf fvtlavlvfl yciaalvvyi gykhvyqqns
      121 klplsdlait vitaflwlvs tsawakalad ikistgpsii sgiefckapg ttchfasvss
      181 mrtlnvsvvf gllnmalwag niwfvykdtn lhnnptgflk vqeynqlkee cknkvif
//
LOCUS       XP_053912162             524 aa            linear   VRT 09-MAR-2023
DEFINITION  probable dolichyl pyrophosphate Glc1Man9GlcNAc2
            alpha-1,3-glucosyltransferase [Cuculus canorus].
ACCESSION   XP_053912162
VERSION     XP_053912162.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056187.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..524
                     /product="probable dolichyl pyrophosphate Glc1Man9GlcNAc2
                     alpha-1,3-glucosyltransferase"
                     /calculated_mol_wt=59920
     Region          19..508
                     /region_name="Alg6_Alg8"
                     /note="ALG6, ALG8 glycosyltransferase family; pfam03155"
                     /db_xref="CDD:460831"
     CDS             1..524
                     /gene="ALG8"
                     /coded_by="XM_054056187.1:36..1610"
                     /db_xref="GeneID:104064143"
ORIGIN      
        1 mmaaagggrg wfravvlgvs flklllipay ystdfevhrn wlaithhlpl sqwyyeatse
       61 wtldyppffa wfeyglshia kyfdpkmlvi enlnytsrat iffqrfsvif tdslfiyavr
      121 eccrcvngkr aakdilekpt filavlllwn fgllivdhih fqyngflfgl mllsvarlcq
      181 krylegallf aillhfkhiy iyvapaygvy llrsycftan nadgslkwrs fsllhvtllg
      241 livclvsals lgpfivlgql pqvisrlfpf krglchaywa pnfwalynam dkaltifglk
      301 cnfldptkip kasmtgglvq efqhtvlpsv tplatlictf isilpsvfcl wfkpqgprgf
      361 lqclvlcals sfmfgwhvhe kaillailpl sllsvqrvkd agiylilttt ghfslfpllf
      421 tapelpikil lmllftvysf sslkslfrre rpllswleti ylvqlvllei fceilfpltp
      481 wkrhfpfvpl lltsvycalg ityawlklyi svlteripvr pkae
//
LOCUS       XP_053912163             626 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin-associated and SH3 domain-containing protein A [Cuculus
            canorus].
ACCESSION   XP_053912163
VERSION     XP_053912163.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056188.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..626
                     /product="ubiquitin-associated and SH3 domain-containing
                     protein A"
                     /calculated_mol_wt=70724
     Region          25..61
                     /region_name="UBA_UBS3A_like"
                     /note="UBA domain found in ubiquitin-associated and SH3
                     domain-containing protein A (UBS3A) and similar proteins;
                     cd14300"
                     /db_xref="CDD:270485"
     Region          241..300
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(247,249,252,256,278..279,294,296..297)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212870"
     Region          416..577
                     /region_name="His_Phos_1"
                     /note="Histidine phosphatase superfamily (branch 1);
                     pfam00300"
                     /db_xref="CDD:459751"
     CDS             1..626
                     /gene="UBASH3A"
                     /coded_by="XM_054056188.1:44..1924"
                     /db_xref="GeneID:104059237"
ORIGIN      
        1 mavaetqlya kvsnkhrsks tsvlleslla kgfpahiaqk alaatgqksi edatkwlhsh
       61 cndpslddpi pqeyalylcp igrlhnhlqe fwkeskrqcg knrahetfph itlcdfftce
      121 dqkvellydt lkrvgdsflq cfppsislal hsstsylgff igdghanilk efalafssea
      181 saladchvkp clkqlhltla hkfyphhqkt leqlakcinp eetcqwvatl ysrdmrfvhy
      241 qtlrvlfqyk pqnidellin vgdfiyvdpt qqsnvsegwv igtshqtgcr gflpenyter
      301 anesdtwvkh reyvfvtapr fstqtenepi vrlnaeicnp swsgsvtnvl slqlsqnvtl
      361 rrgvlvmrhg ervdqvfgks wlqqcltadg kyyradlnfp stlpkrkdsm khfeydppls
      421 ccgifqsrli gealldqevt vsymysspal rciqtaqhil qglklgqkik irvepglfew
      481 tkweankgip nfmtvtelae asyqvdtsyr snfplsslmp sesyeeyisr ssavikqiia
      541 acpskgiili vghgsslasf trpliglpar dsnnfaqvvr kipslgmcfc eelkeenkwq
      601 mvnppvktlt hganaafnwr ngived
//
LOCUS       XP_009559216             336 aa            linear   VRT 09-MAR-2023
DEFINITION  radial spoke head 1 homolog isoform X1 [Cuculus canorus].
ACCESSION   XP_009559216
VERSION     XP_009559216.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560921.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009559216.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..336
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..336
                     /product="radial spoke head 1 homolog isoform X1"
                     /calculated_mol_wt=37828
     Region          <18..165
                     /region_name="COG4642"
                     /note="Uncharacterized conserved protein [Function
                     unknown]"
                     /db_xref="CDD:443680"
     CDS             1..336
                     /gene="RSPH1"
                     /coded_by="XM_009560921.2:50..1060"
                     /db_xref="GeneID:104059272"
ORIGIN      
        1 msdlsseees eepedtlgey egernpeger hgrgkarlpn gdtydgeyeh glrsgqgtyr
       61 frngaryigg ylqnkkhgqg tfyypdgsiy egdwvndqrh gygkytyang diytgewfnd
      121 nrhgqgtyiy kdteskyigg wvngnqegea elihlnhrfk gkfvngnpvg ygkyifdigc
      181 eqhgeyvkae qgkeeeeede dssllvvpkw kaseitkftl wtprvenpps pkeaslveat
      241 taeageeqav eeatavteee kvpsitvtee saegrddefs lheasselfs pakdageenv
      301 rsreeeenkd qeddedqdde gttsledked eskeae
//
LOCUS       XP_053912164             329 aa            linear   VRT 09-MAR-2023
DEFINITION  radial spoke head 1 homolog isoform X2 [Cuculus canorus].
ACCESSION   XP_053912164
VERSION     XP_053912164.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056189.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..329
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..329
                     /product="radial spoke head 1 homolog isoform X2"
                     /calculated_mol_wt=36981
     Region          <18..165
                     /region_name="COG4642"
                     /note="Uncharacterized conserved protein [Function
                     unknown]"
                     /db_xref="CDD:443680"
     CDS             1..329
                     /gene="RSPH1"
                     /coded_by="XM_054056189.1:50..1039"
                     /db_xref="GeneID:104059272"
ORIGIN      
        1 msdlsseees eepedtlgey egernpeger hgrgkarlpn gdtydgeyeh glrsgqgtyr
       61 frngaryigg ylqnkkhgqg tfyypdgsiy egdwvndqrh gygkytyang diytgewfnd
      121 nrhgqgtyiy kdteskyigg wvngnqegea elihlnhrfk gkfvngnpvg ygkyifdigc
      181 eqhgeyvkae qgkeeeeede dssllvvpkw kaseitkftl wtprvenpps pkeaslveat
      241 taeageeqav eeatavteee kvpsitvtee saegrddefs lheasselfs pakdageenv
      301 rsreeeenkd qeddedqdde arsltlsss
//
LOCUS       XP_053912165             322 aa            linear   VRT 09-MAR-2023
DEFINITION  radial spoke head 1 homolog isoform X3 [Cuculus canorus].
ACCESSION   XP_053912165
VERSION     XP_053912165.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056190.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..322
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..322
                     /product="radial spoke head 1 homolog isoform X3"
                     /calculated_mol_wt=36307
     Region          <18..165
                     /region_name="COG4642"
                     /note="Uncharacterized conserved protein [Function
                     unknown]"
                     /db_xref="CDD:443680"
     CDS             1..322
                     /gene="RSPH1"
                     /coded_by="XM_054056190.1:50..1018"
                     /db_xref="GeneID:104059272"
ORIGIN      
        1 msdlsseees eepedtlgey egernpeger hgrgkarlpn gdtydgeyeh glrsgqgtyr
       61 frngaryigg ylqnkkhgqg tfyypdgsiy egdwvndqrh gygkytyang diytgewfnd
      121 nrhgqgtyiy kdteskyigg wvngnqegea elihlnhrfk gkfvngnpvg ygkyifdigc
      181 eqhgeyvkae qgkeeeeede dssllvvpkw kaseitkftl wtprvenpps pkeaslveat
      241 taeageeqav eeatavteee kvpsitvtee saegrddefs lheasselfs pakdageenv
      301 rsreeeenkd qeddedqdde dl
//
LOCUS       XP_053912166             459 aa            linear   VRT 09-MAR-2023
DEFINITION  inward rectifier potassium channel 4 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912166
VERSION     XP_053912166.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056191.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..459
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..459
                     /product="inward rectifier potassium channel 4 isoform X1"
                     /calculated_mol_wt=51530
     Region          18..56
                     /region_name="IRK_N"
                     /note="Inward rectifier potassium channel N-terminal;
                     pfam08466"
                     /db_xref="CDD:462486"
     Region          57..201
                     /region_name="IRK"
                     /note="Inward rectifier potassium channel transmembrane
                     domain; pfam01007"
                     /db_xref="CDD:460023"
     Region          208..380
                     /region_name="IRK_C"
                     /note="Inward rectifier potassium channel C-terminal
                     domain; pfam17655"
                     /db_xref="CDD:465439"
     CDS             1..459
                     /gene="KCNJ4"
                     /coded_by="XM_054056191.1:488..1867"
                     /db_xref="GeneID:104065887"
ORIGIN      
        1 mlarhswsrr qpsagpgysi vsteedghkv salgsmnghs rngkghaprr khrnrfvkkn
       61 gqcnvyfanl snksqrymad ifttcvdtrw rymlmifsaa flvswlffgf lfwciaffhg
      121 dlnapvvggg psllkpcimh vnsflgaflf svetqttigy gfrcvteecp laimavvvqs
      181 ivgcvidsfm igtimakmar pkkraqtllf shhavisvrd gklclmwrvg nlrrshivea
      241 hvraqlikpy mtqegeylpl dqrdlnvgyd vgldriflvs piiivheide esplygigke
      301 eletenfeiv vilegmveat amttqarssy laseilwghr fepvvfeekn hykvdysrfh
      361 ktyevagtpc csarelqesk mtilpspppp safcyenela lvsqdededd devgvvlggs
      421 tteeggviqm mdfgshldle rlqatlpldt isyrresai
//
LOCUS       XP_009566716             455 aa            linear   VRT 09-MAR-2023
DEFINITION  inward rectifier potassium channel 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_009566716
VERSION     XP_009566716.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568421.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..455
                     /product="inward rectifier potassium channel 4 isoform X2"
                     /calculated_mol_wt=51154
     Region          6..52
                     /region_name="IRK_N"
                     /note="Inward rectifier potassium channel N-terminal;
                     pfam08466"
                     /db_xref="CDD:462486"
     Region          53..197
                     /region_name="IRK"
                     /note="Inward rectifier potassium channel transmembrane
                     domain; pfam01007"
                     /db_xref="CDD:460023"
     Region          204..376
                     /region_name="IRK_C"
                     /note="Inward rectifier potassium channel C-terminal
                     domain; pfam17655"
                     /db_xref="CDD:465439"
     CDS             1..455
                     /gene="KCNJ4"
                     /coded_by="XM_009568421.2:678..2045"
                     /db_xref="GeneID:104065887"
ORIGIN      
        1 miqramgsvr vnrysivste edghkvsalg smnghsrngk ghaprrkhrn rfvkkngqcn
       61 vyfanlsnks qrymadiftt cvdtrwryml mifsaaflvs wlffgflfwc iaffhgdlna
      121 pvvgggpsll kpcimhvnsf lgaflfsvet qttigygfrc vteecplaim avvvqsivgc
      181 vidsfmigti makmarpkkr aqtllfshha visvrdgklc lmwrvgnlrr shiveahvra
      241 qlikpymtqe geylpldqrd lnvgydvgld riflvspiii vheideespl ygigkeelet
      301 enfeivvile gmveatamtt qarssylase ilwghrfepv vfeeknhykv dysrfhktye
      361 vagtpccsar elqeskmtil psppppsafc yenelalvsq dededddevg vvlggsttee
      421 ggviqmmdfg shldlerlqa tlpldtisyr resai
//
LOCUS       XP_053912167             455 aa            linear   VRT 09-MAR-2023
DEFINITION  inward rectifier potassium channel 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912167
VERSION     XP_053912167.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056192.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..455
                     /product="inward rectifier potassium channel 4 isoform X2"
                     /calculated_mol_wt=51154
     Region          6..52
                     /region_name="IRK_N"
                     /note="Inward rectifier potassium channel N-terminal;
                     pfam08466"
                     /db_xref="CDD:462486"
     Region          53..197
                     /region_name="IRK"
                     /note="Inward rectifier potassium channel transmembrane
                     domain; pfam01007"
                     /db_xref="CDD:460023"
     Region          204..376
                     /region_name="IRK_C"
                     /note="Inward rectifier potassium channel C-terminal
                     domain; pfam17655"
                     /db_xref="CDD:465439"
     CDS             1..455
                     /gene="KCNJ4"
                     /coded_by="XM_054056192.1:1469..2836"
                     /db_xref="GeneID:104065887"
ORIGIN      
        1 miqramgsvr vnrysivste edghkvsalg smnghsrngk ghaprrkhrn rfvkkngqcn
       61 vyfanlsnks qrymadiftt cvdtrwryml mifsaaflvs wlffgflfwc iaffhgdlna
      121 pvvgggpsll kpcimhvnsf lgaflfsvet qttigygfrc vteecplaim avvvqsivgc
      181 vidsfmigti makmarpkkr aqtllfshha visvrdgklc lmwrvgnlrr shiveahvra
      241 qlikpymtqe geylpldqrd lnvgydvgld riflvspiii vheideespl ygigkeelet
      301 enfeivvile gmveatamtt qarssylase ilwghrfepv vfeeknhykv dysrfhktye
      361 vagtpccsar elqeskmtil psppppsafc yenelalvsq dededddevg vvlggsttee
      421 ggviqmmdfg shldlerlqa tlpldtisyr resai
//
LOCUS       XP_053912170             443 aa            linear   VRT 09-MAR-2023
DEFINITION  inward rectifier potassium channel 4 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912170
VERSION     XP_053912170.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056195.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..443
                     /product="inward rectifier potassium channel 4 isoform X3"
                     /calculated_mol_wt=49785
     Region          2..40
                     /region_name="IRK_N"
                     /note="Inward rectifier potassium channel N-terminal;
                     pfam08466"
                     /db_xref="CDD:462486"
     Region          41..185
                     /region_name="IRK"
                     /note="Inward rectifier potassium channel transmembrane
                     domain; pfam01007"
                     /db_xref="CDD:460023"
     Region          192..364
                     /region_name="IRK_C"
                     /note="Inward rectifier potassium channel C-terminal
                     domain; pfam17655"
                     /db_xref="CDD:465439"
     CDS             1..443
                     /gene="KCNJ4"
                     /coded_by="XM_054056195.1:615..1946"
                     /db_xref="GeneID:104065887"
ORIGIN      
        1 mysivsteed ghkvsalgsm nghsrngkgh aprrkhrnrf vkkngqcnvy fanlsnksqr
       61 ymadifttcv dtrwrymlmi fsaaflvswl ffgflfwcia ffhgdlnapv vgggpsllkp
      121 cimhvnsflg aflfsvetqt tigygfrcvt eecplaimav vvqsivgcvi dsfmigtima
      181 kmarpkkraq tllfshhavi svrdgklclm wrvgnlrrsh iveahvraql ikpymtqege
      241 ylpldqrdln vgydvgldri flvspiiivh eideesplyg igkeeleten feivvilegm
      301 veatamttqa rssylaseil wghrfepvvf eeknhykvdy srfhktyeva gtpccsarel
      361 qeskmtilps ppppsafcye nelalvsqde dedddevgvv lggstteegg viqmmdfgsh
      421 ldlerlqatl pldtisyrre sai
//
LOCUS       XP_053912171            2515 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA polymerase theta [Cuculus canorus].
ACCESSION   XP_053912171
VERSION     XP_053912171.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056196.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2515
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2515
                     /product="DNA polymerase theta"
                     /calculated_mol_wt=278447
     Region          5..562
                     /region_name="BRR2"
                     /note="Replicative superfamily II helicase [Replication,
                     recombination and repair]; COG1204"
                     /db_xref="CDD:440817"
     Region          1825..2010
                     /region_name="DnaQ_like_exo"
                     /note="DnaQ-like (or DEDD) 3'-5' exonuclease domain
                     superfamily; cl10012"
                     /db_xref="CDD:447876"
     Region          2016..2510
                     /region_name="DNA_pol_A_theta"
                     /note="DNA polymerase theta is a low-fidelity family A
                     enzyme implicated in translesion synthesis and in somatic
                     hypermutation; cd08638"
                     /db_xref="CDD:176475"
     Site            order(2124,2128,2131..2132,2160..2162,2164,2166..2169,
                     2255..2256,2284,2304,2308,2392,2399,2463..2465)
                     /site_type="active"
                     /db_xref="CDD:176475"
     Site            order(2124,2128,2131..2132,2160..2162,2164,2166..2169,
                     2316,2391..2392,2395,2399,2463..2465)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:176475"
     Site            order(2255..2256,2258,2284,2304,2308,2465)
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:176475"
     CDS             1..2515
                     /gene="POLQ"
                     /coded_by="XM_054056196.1:226..7773"
                     /db_xref="GeneID:104055866"
ORIGIN      
        1 mfewqaeclm lgqvlegknl vysaptsagk tlvaellilk rvletrkkal lilpfvsvak
       61 ekksylqalf qevdvrvegy mgsmtpagrf saldvavcti ekanglinrl ieenkmdslg
      121 vvvvdelhml gdshrgylle llltkvrylt ekvakrqvkm pglsfdgiqi igmsatlpnl
      181 gllaswldae lyctdfrpvp lkewvkigsn iynssmnlvr efhpklqlkg dedhvvslcy
      241 etvcdghsvl lfcpsknwce kladiiaref yglqlgessa knsaltpvvv dregidevld
      301 qlkrsvsgld pvlqrtlplg vafhhagltf derdiiegaf rqglirvlaa tstlssgvnl
      361 parrviirtp mfggklldil tykqmagrag rkgvdteges ilvckpsers kgtallqgtl
      421 kpvcsclhrr egegvassmk raileiivgg vantpddvqt yasctllass lkeskwggek
      481 aqdkvqtgpi eacvawllen efiqvldsgn dlkakvyhpt hlgsatlsss lspteameif
      541 adlqramksf vlendlhivy lvtpvyeewt tidwyqffcl weklpasmkr vaelvgieeg
      601 flarsvkgki iaktekqhrq maihkrffts lalldlisev plrdmtkkyg csrgqlqslq
      661 qsaatyagmv tvfcnrlgwh nmelllsqfq srltfgvhre lcdlvrvsll naqrarilfs
      721 agfvtvadla kaspddvata lknsipfksv rravdedees aeerrtvrci wmagmkglte
      781 keaaslivee arellqqdla lmgvqwnpes flesdtssmi ssesdledrl rrsngelssk
      841 ssrvlnkngc rvqqcsglgs qtgnlaniki gnkrrlstst ensrfeseap ggrqaqakee
      901 dgdivysark rpsihrgnen aegislvktk tdsrraipel pneqgktptl riksstsrli
      961 kttdmhlnrt rnkstasklq rslledsnml svdmqkphaf hpaiskanvf sdqnskkfme
     1021 tkslthevsn svqmgelnlg kkdkveglft eptttnegmp kgracfqapv klqgtphinv
     1081 emhntvgsll ipasartqrn estddkqnki nkmqteasca evmigkqhva adtdhcnvsa
     1141 scsgnghvrs gsriqkpvhf cpgedkschi qvqnsgkngs akpnrillqd galqkanshp
     1201 kdflkdslik srgvcnaggi lngpssglfs dsrdfedsfq lytqtemvik qdlaagiagq
     1261 qriqgselaa ipqqeiskkl stsctekatd eklaatvrnl glstltttnn itkntaqqcs
     1321 nrvlesgdln lqpitkevis apclkesdfs vtdsqlhsfl qgyqtqnsvk getvskdlnk
     1381 atspfgrehi vqvecypvpe tslnmsdsll fddsfsnvsd lsavhvmead rkepveklsp
     1441 egllqnprla qnksdvggsq kehgdhaqyn nmsvvfsgli aevldhansp sfledlpstf
     1501 pgqtglgnpv vfnndsrpkd lvrdqgeklq rsqqdlekka hpvwwtdhsf eispglwdvl
     1561 dkwpspsgte lvpvnsclke nllapitnqe pdpgfqsdfg qaeplpacqd lknylkiken
     1621 kmedldlqkr dcitlltkgs nrtsclppes nnvfipptpp kevfskssvs lsvksgkerq
     1681 vacvnegqlt kpqeiskdnt eqnvrplqvn lgvvdsvetd eikddstidq gfslqlsqdv
     1741 fpsvslspen ftiidvasdk alfqtfvaew keksrfsisv acerrkrfls pkstiggkfk
     1801 kvsspqwmqv khdgfpvqgc edilvvglav cwggkdayyi slqqtqdqte msmslapppl
     1861 dknlsvserl yqlqlylqkk peqerslvmy nfiqhyktlv macgislegs fedpkvacwl
     1921 ldsgskertl hnmvakflps elpllegvgt gqgvqslgls asgdhsgryr aaiesvlifg
     1981 vmnqlhnelq kenltdvftq vempthycla llelngigfs ttayetqkqv mqaklseiet
     2041 kayqlaghsf sltspddiae vlylelkllq ngevkgnkkt lgytrratak gnrirlskqf
     2101 sttkdvlekl ktlhplpgli lewrrinnai tkvvfplqre krlnsalgme riypvsqtht
     2161 atgritftep niqnvprdfe iemptvvees ppsgahrnan cralsagrcr rysrilpngl
     2221 kvqaedrske rgipfsvsmr hafvpfpggl ilaadysqle lrilahlscd crliqalngg
     2281 tdvfksiaae wkmidpeavg dstrqqakqi cygiiygiga kslgeqmgid eneaasyies
     2341 fksrytgiqt flretvrncr rdgfvqtilg rrrylpaikd pnpyskahae rqavnttvqg
     2401 saadivktat vniqrrleaf ssvvkshghl essfqrhktg rlagkrnrgm lhpvsggffi
     2461 lqlhdellye vaeddviqva qivkhemeea iklsvklnvk vkigpswgdl qdlel
//
LOCUS       XP_053912172             168 aa            linear   VRT 09-MAR-2023
DEFINITION  dromaiocalcin-1-like [Cuculus canorus].
ACCESSION   XP_053912172
VERSION     XP_053912172.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056197.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..168
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..168
                     /product="dromaiocalcin-1-like"
                     /calculated_mol_wt=18784
     Region          37..165
                     /region_name="CLECT"
                     /note="C-type lectin (CTL)/C-type lectin-like (CTLD)
                     domain; cl02432"
                     /db_xref="CDD:470576"
     Site            order(137,141,143,150,152..155,158..160)
                     /site_type="other"
                     /note="ligand binding surface [chemical binding]"
                     /db_xref="CDD:153064"
     CDS             1..168
                     /gene="LOC128850924"
                     /coded_by="XM_054056197.1:1..507"
                     /db_xref="GeneID:128850924"
ORIGIN      
        1 mgpsallrlc llstlalhpt lqaprplpgv gvqrhecppg wlelgrrcyg yfswelswre
       61 aqgwcrascs gcglaslhgp aehralaafi aqrqrrdded eedvwiglyr rgrgwrwlgg
      121 sdqrcpprrg dedsdssrca aleestgfls wegescgekk pflcqrvq
//
LOCUS       XP_053912174             156 aa            linear   VRT 09-MAR-2023
DEFINITION  cysteine and tyrosine-rich protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912174
VERSION     XP_053912174.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056199.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..156
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..156
                     /product="cysteine and tyrosine-rich protein 1 isoform X1"
                     /calculated_mol_wt=16553
     Region          26..130
                     /region_name="CYYR1"
                     /note="Cysteine and tyrosine-rich protein 1; pfam10873"
                     /db_xref="CDD:313948"
     CDS             1..156
                     /gene="CYYR1"
                     /coded_by="XM_054056199.1:89..559"
                     /db_xref="GeneID:104064801"
ORIGIN      
        1 mepagrpaag rllpaallfl lllaaedcla qcdndckayc cdgttpyccs yyayignvls
       61 gtaiagivfg ivfimgviag vaicicmcmk nnrgtrvgvi qtthintist ypvapppysy
      121 eyemeypadl pppytptpqt siqypppppy pgnsgk
//
LOCUS       XP_053912175             155 aa            linear   VRT 09-MAR-2023
DEFINITION  cysteine and tyrosine-rich protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912175
VERSION     XP_053912175.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056200.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..155
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..155
                     /product="cysteine and tyrosine-rich protein 1 isoform X2"
                     /calculated_mol_wt=16482
     Region          25..129
                     /region_name="CYYR1"
                     /note="Cysteine and tyrosine-rich protein 1; pfam10873"
                     /db_xref="CDD:313948"
     CDS             1..155
                     /gene="CYYR1"
                     /coded_by="XM_054056200.1:86..553"
                     /db_xref="GeneID:104064801"
ORIGIN      
        1 mepagrpaag rllpaallfl lllaedclaq cdndckaycc dgttpyccsy yayignvlsg
       61 taiagivfgi vfimgviagv aicicmcmkn nrgtrvgviq tthintisty pvapppysye
      121 yemeypadlp ppytptpqts iqypppppyp gnsgk
//
LOCUS       XP_053912176            1149 aa            linear   VRT 09-MAR-2023
DEFINITION  protein diaphanous homolog 3 [Cuculus canorus].
ACCESSION   XP_053912176
VERSION     XP_053912176.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056201.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1149
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1149
                     /product="protein diaphanous homolog 3"
                     /calculated_mol_wt=131770
     Region          100..283
                     /region_name="Drf_GBD"
                     /note="Diaphanous GTPase-binding Domain; pfam06371"
                     /db_xref="CDD:461886"
     Region          291..478
                     /region_name="Drf_FH3"
                     /note="Diaphanous FH3 Domain; pfam06367"
                     /db_xref="CDD:461885"
     Region          633..1005
                     /region_name="FH2"
                     /note="Formin Homology 2 Domain; pfam02181"
                     /db_xref="CDD:396655"
     CDS             1..1149
                     /gene="DIAPH3"
                     /coded_by="XM_054056201.1:214..3663"
                     /db_xref="GeneID:104061848"
ORIGIN      
        1 meprrprycp pssppgrenk glrrkgpaet gsaggsreaa darkpkfhln iktltddvld
       61 rfasiripgs kkerpplphm kqsystdwss tpmdaedfap kplsereiia lfekmmedmn
      121 lnedkkmplr ekdfntkkem vmqyistask sgslknsrki spqefihelk sgstderlat
      181 cleslrvslt snpvswvenf greglgllld vlerlvetkn qdklvkrsqh kviqclrafm
      241 nnkygleril geerslllli kaidpkqtnm mtdivkllsa mcivgeenil ekileavtaa
      301 aeeknvnrfs piveglqdns vqlqvacmql inalvtspdd ldfrlhirne fmrsglkeil
      361 pqlkciknea ldiqlkvfne hkeedmiefs hrledirsel devndvynmv wntvkdttae
      421 gyflsilqhl llirndyfir pqyfklieec vsqivlhrsg tdpdfsyrkr ldvnfshlvd
      481 icvdkarlee ceeraselsr klekdfvahq etqallqkke erineleael qafksqygsl
      541 ppgllpsicg dasvvpreaa gphqllpppp ppplpangaf pppppppppp pllnglgips
      601 afggappppp plpglpgaqr tppscalpfg mrpkkefrpe vtmkrlnwsk irpqemtesc
      661 fwvkaqeeky enadmlckle lrfccqkrvk keeedfeekk sikkrikelk vldpkiaqnl
      721 siflgsfrvp yeeikmmile vdetqlsesm iqnlikhlpe qeqlnalskf kneynnlsep
      781 eqfgvvmsnv krlrsrlsai lfklqfeeqv nnikpdimav saaceeikks ksfskllelv
      841 llmgnymnag srnaqtfgyn lsslcklkdt ksadqkttll hflvevcees yqdvlnfved
      901 fqhldkaskv saenlekslk hmerqlqqle kdlhtfpvpe dkhdkfvakm ssflvhaked
      961 vqkvsrmhen mekiyqnvmg yyaidlkkvs veefltdlnn frtmfmqaik enmrrreaee
     1021 kqrrakiakd kaekekqerq qkkkrllemk tegeetgvmd sllealqsga afrdrrkrtp
     1081 rskdipqnls pttqrlvlka cnhgtpcysr wtnsaspeie pdtttreimf apqyqfkpdk
     1141 kpshqrsyl
//
LOCUS       XP_053912177              89 aa            linear   VRT 09-MAR-2023
DEFINITION  small muscular protein [Cuculus canorus].
ACCESSION   XP_053912177
VERSION     XP_053912177.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056202.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..89
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..89
                     /product="small muscular protein"
                     /calculated_mol_wt=9657
     Region          1..88
                     /region_name="Chisel"
                     /note="Stretch-responsive small skeletal muscle X protein,
                     Chisel; pfam15355"
                     /db_xref="CDD:405939"
     CDS             1..89
                     /gene="SMPX"
                     /coded_by="XM_054056202.1:173..442"
                     /db_xref="GeneID:104063380"
ORIGIN      
        1 mskqpashvk aiqaninipm gafrpgaghp hkrkeftpee veesvpaste eekdkkhlpg
       61 akklpgpavn lseiqnikse lkfvpraeq
//
LOCUS       XP_053912178              89 aa            linear   VRT 09-MAR-2023
DEFINITION  small muscular protein [Cuculus canorus].
ACCESSION   XP_053912178
VERSION     XP_053912178.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056203.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..89
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..89
                     /product="small muscular protein"
                     /calculated_mol_wt=9657
     Region          1..88
                     /region_name="Chisel"
                     /note="Stretch-responsive small skeletal muscle X protein,
                     Chisel; pfam15355"
                     /db_xref="CDD:405939"
     CDS             1..89
                     /gene="SMPX"
                     /coded_by="XM_054056203.1:173..442"
                     /db_xref="GeneID:104063380"
ORIGIN      
        1 mskqpashvk aiqaninipm gafrpgaghp hkrkeftpee veesvpaste eekdkkhlpg
       61 akklpgpavn lseiqnikse lkfvpraeq
//
LOCUS       XP_053912179              89 aa            linear   VRT 09-MAR-2023
DEFINITION  small muscular protein [Cuculus canorus].
ACCESSION   XP_053912179
VERSION     XP_053912179.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056204.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..89
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..89
                     /product="small muscular protein"
                     /calculated_mol_wt=9657
     Region          1..88
                     /region_name="Chisel"
                     /note="Stretch-responsive small skeletal muscle X protein,
                     Chisel; pfam15355"
                     /db_xref="CDD:405939"
     CDS             1..89
                     /gene="SMPX"
                     /coded_by="XM_054056204.1:173..442"
                     /db_xref="GeneID:104063380"
ORIGIN      
        1 mskqpashvk aiqaninipm gafrpgaghp hkrkeftpee veesvpaste eekdkkhlpg
       61 akklpgpavn lseiqnikse lkfvpraeq
//
LOCUS       XP_053912180              89 aa            linear   VRT 09-MAR-2023
DEFINITION  small muscular protein [Cuculus canorus].
ACCESSION   XP_053912180
VERSION     XP_053912180.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056205.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..89
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..89
                     /product="small muscular protein"
                     /calculated_mol_wt=9657
     Region          1..88
                     /region_name="Chisel"
                     /note="Stretch-responsive small skeletal muscle X protein,
                     Chisel; pfam15355"
                     /db_xref="CDD:405939"
     CDS             1..89
                     /gene="SMPX"
                     /coded_by="XM_054056205.1:173..442"
                     /db_xref="GeneID:104063380"
ORIGIN      
        1 mskqpashvk aiqaninipm gafrpgaghp hkrkeftpee veesvpaste eekdkkhlpg
       61 akklpgpavn lseiqnikse lkfvpraeq
//
LOCUS       XP_053912181              89 aa            linear   VRT 09-MAR-2023
DEFINITION  small muscular protein [Cuculus canorus].
ACCESSION   XP_053912181
VERSION     XP_053912181.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056206.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..89
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..89
                     /product="small muscular protein"
                     /calculated_mol_wt=9657
     Region          1..88
                     /region_name="Chisel"
                     /note="Stretch-responsive small skeletal muscle X protein,
                     Chisel; pfam15355"
                     /db_xref="CDD:405939"
     CDS             1..89
                     /gene="SMPX"
                     /coded_by="XM_054056206.1:192..461"
                     /db_xref="GeneID:104063380"
ORIGIN      
        1 mskqpashvk aiqaninipm gafrpgaghp hkrkeftpee veesvpaste eekdkkhlpg
       61 akklpgpavn lseiqnikse lkfvpraeq
//
LOCUS       XP_053912182              89 aa            linear   VRT 09-MAR-2023
DEFINITION  small muscular protein [Cuculus canorus].
ACCESSION   XP_053912182
VERSION     XP_053912182.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056207.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..89
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..89
                     /product="small muscular protein"
                     /calculated_mol_wt=9657
     Region          1..88
                     /region_name="Chisel"
                     /note="Stretch-responsive small skeletal muscle X protein,
                     Chisel; pfam15355"
                     /db_xref="CDD:405939"
     CDS             1..89
                     /gene="SMPX"
                     /coded_by="XM_054056207.1:159..428"
                     /db_xref="GeneID:104063380"
ORIGIN      
        1 mskqpashvk aiqaninipm gafrpgaghp hkrkeftpee veesvpaste eekdkkhlpg
       61 akklpgpavn lseiqnikse lkfvpraeq
//
LOCUS       XP_053912183              89 aa            linear   VRT 09-MAR-2023
DEFINITION  small muscular protein [Cuculus canorus].
ACCESSION   XP_053912183
VERSION     XP_053912183.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056208.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..89
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..89
                     /product="small muscular protein"
                     /calculated_mol_wt=9657
     Region          1..88
                     /region_name="Chisel"
                     /note="Stretch-responsive small skeletal muscle X protein,
                     Chisel; pfam15355"
                     /db_xref="CDD:405939"
     CDS             1..89
                     /gene="SMPX"
                     /coded_by="XM_054056208.1:184..453"
                     /db_xref="GeneID:104063380"
ORIGIN      
        1 mskqpashvk aiqaninipm gafrpgaghp hkrkeftpee veesvpaste eekdkkhlpg
       61 akklpgpavn lseiqnikse lkfvpraeq
//
LOCUS       XP_053912184              89 aa            linear   VRT 09-MAR-2023
DEFINITION  small muscular protein [Cuculus canorus].
ACCESSION   XP_053912184
VERSION     XP_053912184.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056209.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..89
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..89
                     /product="small muscular protein"
                     /calculated_mol_wt=9657
     Region          1..88
                     /region_name="Chisel"
                     /note="Stretch-responsive small skeletal muscle X protein,
                     Chisel; pfam15355"
                     /db_xref="CDD:405939"
     CDS             1..89
                     /gene="SMPX"
                     /coded_by="XM_054056209.1:41..310"
                     /db_xref="GeneID:104063380"
ORIGIN      
        1 mskqpashvk aiqaninipm gafrpgaghp hkrkeftpee veesvpaste eekdkkhlpg
       61 akklpgpavn lseiqnikse lkfvpraeq
//
LOCUS       XP_053912185              89 aa            linear   VRT 09-MAR-2023
DEFINITION  small muscular protein [Cuculus canorus].
ACCESSION   XP_053912185
VERSION     XP_053912185.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056210.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..89
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..89
                     /product="small muscular protein"
                     /calculated_mol_wt=9657
     Region          1..88
                     /region_name="Chisel"
                     /note="Stretch-responsive small skeletal muscle X protein,
                     Chisel; pfam15355"
                     /db_xref="CDD:405939"
     CDS             1..89
                     /gene="SMPX"
                     /coded_by="XM_054056210.1:94..363"
                     /db_xref="GeneID:104063380"
ORIGIN      
        1 mskqpashvk aiqaninipm gafrpgaghp hkrkeftpee veesvpaste eekdkkhlpg
       61 akklpgpavn lseiqnikse lkfvpraeq
//
LOCUS       XP_009555127              98 aa            linear   VRT 09-MAR-2023
DEFINITION  cystatin-B [Cuculus canorus].
ACCESSION   XP_009555127
VERSION     XP_009555127.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556832.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555127.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..98
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..98
                     /product="cystatin-B"
                     /calculated_mol_wt=11013
     Region          4..92
                     /region_name="Cystatin"
                     /note="Cystatin domain; pfam00031"
                     /db_xref="CDD:425431"
     Site            order(4,46..48,50)
                     /site_type="active"
                     /note="putative proteinase inhibition site [active]"
                     /db_xref="CDD:238002"
     CDS             1..98
                     /gene="LOC104055673"
                     /coded_by="XM_009556832.2:90..386"
                     /db_xref="GeneID:104055673"
ORIGIN      
        1 mmcggpsaar aatqetqqia eevkpqleek egktfdvfta vefktqvvag tnyfikvhvg
       61 ndeflhlrvf rslphenkpl slhsyqsskt khdeltyf
//
LOCUS       XP_009566736             667 aa            linear   VRT 09-MAR-2023
DEFINITION  SH3 domain-binding protein 1 [Cuculus canorus].
ACCESSION   XP_009566736
VERSION     XP_009566736.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568441.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566736.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..667
                     /product="SH3 domain-binding protein 1"
                     /calculated_mol_wt=72552
     Region          19..270
                     /region_name="BAR"
                     /note="The Bin/Amphiphysin/Rvs (BAR) domain, a
                     dimerization module that binds membranes and detects
                     membrane curvature; cl12013"
                     /db_xref="CDD:472257"
     Site            order(25,28..29,36,38..39,42..43,45..46,74..75,77..78,
                     81..82,84..85,88,102,105..106,212,215..216,218,222,
                     225..226,228..229,232..233,236..237,239..240,243..244,
                     246..247)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:153304"
     Region          271..470
                     /region_name="RhoGAP"
                     /note="GTPase-activator protein (GAP) for Rho-like
                     GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases.
                     Small GTPases (G proteins) cluster into distinct families,
                     and all act as molecular switches, active in their
                     GTP-bound form but inactive when bound to...; cl02570"
                     /db_xref="CDD:470621"
     Site            order(309,346,350,419,422..423,452)
                     /site_type="other"
                     /note="GTPase interaction site"
                     /db_xref="CDD:239851"
     Site            309
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239851"
     Region          <485..664
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..667
                     /gene="SH3BP1"
                     /coded_by="XM_009568441.2:464..2467"
                     /db_xref="GeneID:104065909"
ORIGIN      
        1 mmkrqfnrmr qqlshpnits raqeatevlp edllqieqri epakraahsv skrlqaclqg
       61 qcgsemdkrv kklplmalsm tmaesfkeld tesslgkale mgcciqssla kilaefeial
      121 ehdvlqplnk lseeelpiil khkktlqkli sdwntiksrl nqaaksssns sgagagpgas
      181 saankleilk eeeeevkrkv eqckdeymad lyhfstkeds yasyfirlle iqaqyhrqsl
      241 gsldsalael keshnqteps fpadmpvagy ygvplethlk nlgreialpi eacvmmllas
      301 gmreeglfrl aagasvlrkl ksslasgsna leefysdpha vagalksylr elpqplmtfe
      361 lynewvkvas lkdvdgriqs lqdtcsrlpq esynnlryli kflaklaehq evnkmtpsni
      421 aivlgpnllw pqqstgdpvq ldlasvssiq vvgvvealiq nadilfpgev dfnvsgmftp
      481 padgrlgeti lveepspeps paispadlde eailrdpegr sqpaspaptt pspeavepsn
      541 pqmtedtahk gkrpapappm mpppvaqprt itpapaaleh taspkarprr magapcraps
      601 vppplppqpa rrhsrdtpps prlpaseadt aaamncalgt teeeqplpag grsslatlpa
      661 tgqpmen
//
LOCUS       XP_009566737             294 aa            linear   VRT 09-MAR-2023
DEFINITION  chronophin [Cuculus canorus].
ACCESSION   XP_009566737
VERSION     XP_009566737.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568442.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566737.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..294
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..294
                     /product="chronophin"
                     /calculated_mol_wt=31484
     Region          19..292
                     /region_name="Haloacid Dehalogenase-like Hydrolases"
                     /note="The haloacid dehalogenase (HAD) superfamily
                     includes carbon and phosphorus hydrolases such as
                     2-haloalkonoate dehalogenase, epoxide hydrolase,
                     phosphoserine phosphatase, phosphomannomutase,
                     phosphoglycolate phosphatase, P-type ATPase, among others.
                     These...; cl21460"
                     /db_xref="CDD:473868"
     Site            order(25..29,58..59,208,232..233,237..238)
                     /site_type="active"
                     /db_xref="CDD:319763"
     CDS             1..294
                     /gene="PDXP"
                     /coded_by="XM_009568442.2:44..928"
                     /db_xref="GeneID:104065910"
ORIGIN      
        1 mascrrlsga glrevlgpaq gllfdcdgvl wageravpga pellerlrrs gkaaffvsnn
       61 srrsvaeler rfallgfrgv raehifssal csalflrqrl lgdggasgrv fvlggeglrg
      121 evrdaglrlh gdgaaepvra vlvgyddqft faklaqacvy lrdprcllva tdadpwhlls
      181 dgqrtpgtgs ltaavetasg rralvvgkpn tymfdcimer fgidpsrtlm vgdrletdil
      241 fgkncglsti ltltgvsrle eaqaymasds taakdlvpny yvdsiadlip glde
//
LOCUS       XP_053912187             783 aa            linear   VRT 09-MAR-2023
DEFINITION  GRIP and coiled-coil domain-containing protein 1 [Cuculus canorus].
ACCESSION   XP_053912187
VERSION     XP_053912187.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056212.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..783
                     /product="GRIP and coiled-coil domain-containing protein
                     1"
                     /calculated_mol_wt=88222
     Region          165..>365
                     /region_name="PRK11281"
                     /note="mechanosensitive channel MscK; cl46976"
                     /db_xref="CDD:481316"
     Region          266..>622
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          725..768
                     /region_name="GRIP"
                     /note="GRIP domain; pfam01465"
                     /db_xref="CDD:460221"
     CDS             1..783
                     /gene="GCC1"
                     /coded_by="XM_054056212.1:80..2431"
                     /db_xref="GeneID:104062243"
ORIGIN      
        1 mekfgmnfgg gpskkdllet idsqkkqllq yqvrlkdvvr ayksllkeke aleaslkvls
       61 vsheadvgls svqpatvass gssfpdaadd rssvhsedsa gtatsadtaa slastkgevg
      121 pedekpmaaa sslkseetsg sesgvstgsg dvspaanead rrvlqlktql atltsalstv
      181 tqeksrmeas yqadkkkmkq dlddaikkae eeierlemel ksvrdqlaet karlitqqhd
      241 raqeesdhav mlrelqkllq sertlrqdae lkleetraal agracmadra egyelrikql
      301 sqevedlkrq lqavqeesnk sdpriqdlqe eitslknhfq aqllqemkkt tqaeeqlrqh
      361 aqmeerrvad legqvsevse llgtyekakq kdqaiiqklk driaqldlen ktlaiaassr
      421 spldvhieea nldvnvlkdk meklkkllqa aakksqptld ieklcelelp kntetgdgek
      481 atalyyqqel kqlkeefery kmraqvvlkn ksakdgnlak eleeaqeqla dlkekyivlq
      541 vssdemekqh qhdmeakkqe lsqlqqihrq elercqleyr eralkleeem hkqrdralav
      601 laekdqeleq lrsvafphgv qgsknylasg tdgtgrdslg ndaseilpqa lhlstsgept
      661 fflyaeqlar keveivalrk qkhklemqlh qlrekvlaee ekhreevstl qseieknfrd
      721 ksreganley lknivyrflt lpdslgrqqt ltailtilhf speekqtiak qsassswwls
      781 gkr
//
LOCUS       XP_053912188             123 aa            linear   VRT 09-MAR-2023
DEFINITION  C-type natriuretic peptide 2-like [Cuculus canorus].
ACCESSION   XP_053912188
VERSION     XP_053912188.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056213.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..123
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..123
                     /product="C-type natriuretic peptide 2-like"
                     /calculated_mol_wt=13349
     Region          <105..123
                     /region_name="ANP"
                     /note="Atrial natriuretic peptide; cl27729"
                     /db_xref="CDD:474962"
     CDS             1..123
                     /gene="LOC128850925"
                     /coded_by="XM_054056213.1:5..376"
                     /db_xref="GeneID:128850925"
ORIGIN      
        1 mlglrswpcl lflllvllsa svqtvslpgq rlqmllsqll pperestlae edtkegssfg
       61 pqllsstlpf lpsaaraarp slwrknlagr kwalpgdwaw kamprgcfgl kldrigtfsg
      121 lgc
//
LOCUS       XP_009558238             384 aa            linear   VRT 09-MAR-2023
DEFINITION  dual specificity protein phosphatase 6 [Cuculus canorus].
ACCESSION   XP_009558238
VERSION     XP_009558238.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009559943.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..384
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..384
                     /product="dual specificity protein phosphatase 6"
                     /calculated_mol_wt=42672
     Region          18..150
                     /region_name="DSP_MapKP"
                     /note="N-terminal regulatory rhodanese domain of dual
                     specificity phosphatases (DSP), such as Mapk Phosphatase.
                     This domain is believed to determine substrate specificity
                     by binding the substrate, such as ERK2, and activating the
                     C-terminal catalytic domain by...; cd01446"
                     /db_xref="CDD:238723"
     Site            64..66
                     /site_type="active"
                     /note="putative substrate binding residues [active]"
                     /db_xref="CDD:238723"
     Region          210..346
                     /region_name="DSP_MKP_classII"
                     /note="dual specificity phosphatase domain of class II
                     mitogen-activated protein kinase phosphatase; cd14566"
                     /db_xref="CDD:350414"
     CDS             1..384
                     /gene="DUSP6"
                     /coded_by="XM_009559943.2:460..1614"
                     /db_xref="GeneID:104058428"
ORIGIN      
        1 mlidtfrpvp fasemaisks vawlneqlem gnerlllmdc rpqelyessh iesainvaip
       61 gimlrrlqkg nlplrslvss sseedrerfa rrcgtdtvvl ydehsrdwne ntggesvlgl
      121 llkrlkdegc kafyleggfs kfqaefalhc etnldsscss sspplpvlgl gglrissdss
      181 sdiesdidrd pnsatdsdgs plsnnqpsfp veilpylylg cakdstnldv leefgikyil
      241 nvtpnlpnlf enagefkykq ipisdhwsqn lsqffpeais fideargknc gvlvhclagi
      301 srsvtvtvay lmqklnlsmn daydivkmkk snispnfnfm gqlldfertl glsspcdnrv
      361 pnqqlyfttp snqnvfqvds lqst
//
LOCUS       XP_053912189             434 aa            linear   VRT 09-MAR-2023
DEFINITION  wnt inhibitory factor 1 [Cuculus canorus].
ACCESSION   XP_053912189
VERSION     XP_053912189.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056214.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..434
                     /product="wnt inhibitory factor 1"
                     /calculated_mol_wt=47403
     Region          91..234
                     /region_name="WIF"
                     /note="WIF domain; cl02623"
                     /db_xref="CDD:470637"
     CDS             1..434
                     /gene="WIF1"
                     /coded_by="XM_054056214.1:32..1336"
                     /db_xref="GeneID:104061560"
ORIGIN      
        1 merdrsparf lklcrrslra lirgtlglpr lcppaapppr grgrapprla rrqsrtaars
       61 mapagrlcaa llcgalslcs lraaprqpdt lylwidarqa rlligfeedi livsegrmap
      121 fthdfrkaqq rmpavpvair avnftwqatg raeyfyefls lrsldkgims dptinipllg
      181 kvphkasvvq vgfpclgkqd gvaafevnvi imnsegniil qtpqnaiffk tcqqaecpgg
      241 crnggfcner hvcecpdgfy gphcekalca prcmngglci tpglcicppg fygincdkan
      301 ctttcfnggt cfylgkcicp sgyegdqcei skchqpcrng gkctgrnkck cskgyqgdlc
      361 skpvcepgcg lygtcvepnk cqckegwhgr hcnkrygasg lstlrsaesk hrqqtpspkk
      421 aeethvppes nyiw
//
LOCUS       XP_053912191            1178 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription termination factor 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912191
VERSION     XP_053912191.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056216.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1178
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1178
                     /product="transcription termination factor 2 isoform X1"
                     /calculated_mol_wt=129235
     Region          4..42
                     /region_name="zf-GRF"
                     /note="GRF zinc finger; cl46396"
                     /db_xref="CDD:480736"
     Region          <568..1158
                     /region_name="HepA"
                     /note="Superfamily II DNA or RNA helicase, SNF2 family
                     [Transcription, Replication, recombination, and repair];
                     COG0553"
                     /db_xref="CDD:440319"
     Region          581..820
                     /region_name="DEXHc_TTF2"
                     /note="DEAH-box helicase domain of TTF2; cd18072"
                     /db_xref="CDD:350830"
     Site            order(609..615,669,750..751)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350830"
     CDS             1..1178
                     /gene="TTF2"
                     /coded_by="XM_054056216.1:80..3616"
                     /db_xref="GeneID:104055834"
ORIGIN      
        1 melvpcvlhg spcllktgvr ggpnqgrsfy vcgvrspapc gfvlpapipa shclihegcm
       61 velqvliqhq gkdeyqllyr ctkgysngkt wcgsipwqdp katkvskale sqhniapvfn
      121 psgqrnpfkv idkncdpssw kqikqgngee srakgvkaek esmlashkek ksipassiek
      181 epleglktkn kqstgnktdp vfkdstvpgs klgisenckg kntlwekeky ggsgreskks
      241 secvekepgg ssklfplslg kqsastkpae deqlggksln scedketrkk eyvggkngev
      301 klmskedmis pvagkdafqh paqkgggvaa psrtqirpel gqaagavsgr dtdgvgfvyt
      361 ssgksepees vedlqsreil agksgtslpg aaashhvegl qdpkalynhl vvqlrqkksv
      421 latvntqrlp dkgerlrkqv qdleaalsaf kistagttgk gehstssdyh eeplptqldr
      481 pggtklitpq llqnpasgts scshshtsaa ttlgsseygs shgfgmnsgv qnlyggrmte
      541 driravhsat seainhlhks lescpteqtt aenpsglkvp llphqkqala wllwresqrp
      601 cggiladdmg lgktltmial iltqkqlnte krkeekleiw lskndsavip shstliicpa
      661 slihhwkkei drrvsygklr vclyhgsnre khaevltgyd ivvttyslls kevptskeeg
      721 evpaedhdvr sgsspcspll riawariild eahniknpki qtsiavcklr asarwavtgt
      781 piqnnlldmy sllrflrcsp fdeykvwkyq vdnntkkgge rlslltrsll lrrtkdqlds
      841 agkplvalpq rstqlhqlkl speeqsvynv lfarsrstlq sylqrqeqkn egreyaggnp
      901 fervaqdfgi nqkeflagsq sapqvsstvh vlsmllrlrq ccchlsllkv aldqtnlhse
      961 gltlsieeql saltltelqt pdykstvyls gtafktdlfe itrestkiah llaelktiqs
     1021 hsepqksvvv sqwtsmlkvv svhlqrlglk yatvdgsvnp kqrmdvveef nnnprgpqvl
     1081 lvsllaggvg lnltggnhlf lldmhwnpal edqacdriyr vgqqkdvvih rfvcegtvee
     1141 kilqlqrskk vlaqqvlsgk getftkltld dlknlfgi
//
LOCUS       XP_053912192            1173 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription termination factor 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912192
VERSION     XP_053912192.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056217.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1173
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1173
                     /product="transcription termination factor 2 isoform X2"
                     /calculated_mol_wt=128790
     Region          4..42
                     /region_name="zf-GRF"
                     /note="GRF zinc finger; cl46396"
                     /db_xref="CDD:480736"
     Region          <563..1153
                     /region_name="HepA"
                     /note="Superfamily II DNA or RNA helicase, SNF2 family
                     [Transcription, Replication, recombination, and repair];
                     COG0553"
                     /db_xref="CDD:440319"
     Region          576..815
                     /region_name="DEXHc_TTF2"
                     /note="DEAH-box helicase domain of TTF2; cd18072"
                     /db_xref="CDD:350830"
     Site            order(604..610,664,745..746)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350830"
     CDS             1..1173
                     /gene="TTF2"
                     /coded_by="XM_054056217.1:80..3601"
                     /db_xref="GeneID:104055834"
ORIGIN      
        1 melvpcvlhg spcllktgvr ggpnqgrsfy vcgvrspapc gfvlpapipa shclihegcm
       61 velqvliqhq gkdeyqllyr ctkgysngkt wcgsipwqdp katkvskale sqhniapvfn
      121 psgqrnpfkv idkncdpssw kqikqgngee srakgvkaek esmlashkek ksipassiek
      181 epleglktkn kqstgnktdp vfkdstvpgs klgisenckg kntlwekeky ggsgreskks
      241 secvekepgg ssklfplslg kqsastkpae deqlggksln scedketrkk eyvggkngev
      301 klmskedmis pvagkdafqh paqkgggvaa psrtqirpel gqaagavsgr dtdgvgfvyt
      361 ssgksepees vedlqsreil agksgtslpg aaashhvegl qdpkalynhl vvqlrqkksv
      421 latvntqrlp dkgerlrkqv qdleaalsaf kistagehst ssdyheeplp tqldrpggtk
      481 litpqllqnp asgtsscshs htsaattlgs seygsshgfg mnsgvqnlyg grmtedrira
      541 vhsatseain hlhkslescp teqttaenps glkvpllphq kqalawllwr esqrpcggil
      601 addmglgktl tmialiltqk qlntekrkee kleiwlsknd savipshstl iicpaslihh
      661 wkkeidrrvs ygklrvclyh gsnrekhaev ltgydivvtt ysllskevpt skeegevpae
      721 dhdvrsgssp cspllriawa riildeahni knpkiqtsia vcklrasarw avtgtpiqnn
      781 lldmysllrf lrcspfdeyk vwkyqvdnnt kkggerlsll trslllrrtk dqldsagkpl
      841 valpqrstql hqlklspeeq svynvlfars rstlqsylqr qeqknegrey aggnpferva
      901 qdfginqkef lagsqsapqv sstvhvlsml lrlrqccchl sllkvaldqt nlhsegltls
      961 ieeqlsaltl telqtpdyks tvylsgtafk tdlfeitres tkiahllael ktiqshsepq
     1021 ksvvvsqwts mlkvvsvhlq rlglkyatvd gsvnpkqrmd vveefnnnpr gpqvllvsll
     1081 aggvglnltg gnhlflldmh wnpaledqac driyrvgqqk dvvihrfvce gtveekilql
     1141 qrskkvlaqq vlsgkgetft kltlddlknl fgi
//
LOCUS       XP_053912193            1119 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription termination factor 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912193
VERSION     XP_053912193.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056218.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1119
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1119
                     /product="transcription termination factor 2 isoform X3"
                     /calculated_mol_wt=123122
     Region          <509..1099
                     /region_name="HepA"
                     /note="Superfamily II DNA or RNA helicase, SNF2 family
                     [Transcription, Replication, recombination, and repair];
                     COG0553"
                     /db_xref="CDD:440319"
     Region          522..761
                     /region_name="DEXHc_TTF2"
                     /note="DEAH-box helicase domain of TTF2; cd18072"
                     /db_xref="CDD:350830"
     Site            order(550..556,610,691..692)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350830"
     CDS             1..1119
                     /gene="TTF2"
                     /coded_by="XM_054056218.1:295..3654"
                     /db_xref="GeneID:104055834"
ORIGIN      
        1 mvelqvliqh qgkdeyqlly rctkgysngk twcgsipwqd pkatkvskal esqhniapvf
       61 npsgqrnpfk vidkncdpss wkqikqgnge esrakgvkae kesmlashke kksipassie
      121 kepleglktk nkqstgnktd pvfkdstvpg sklgisenck gkntlwekek yggsgreskk
      181 ssecvekepg gssklfplsl gkqsastkpa edeqlggksl nscedketrk keyvggknge
      241 vklmskedmi spvagkdafq hpaqkgggva apsrtqirpe lgqaagavsg rdtdgvgfvy
      301 tssgksepee svedlqsrei lagksgtslp gaaashhveg lqdpkalynh lvvqlrqkks
      361 vlatvntqrl pdkgerlrkq vqdleaalsa fkistagttg kgehstssdy heeplptqld
      421 rpggtklitp qllqnpasgt sscshshtsa attlgsseyg sshgfgmnsg vqnlyggrmt
      481 edriravhsa tseainhlhk slescpteqt taenpsglkv pllphqkqal awllwresqr
      541 pcggiladdm glgktltmia liltqkqlnt ekrkeeklei wlskndsavi pshstliicp
      601 aslihhwkke idrrvsygkl rvclyhgsnr ekhaevltgy divvttysll skevptskee
      661 gevpaedhdv rsgsspcspl lriawariil deahniknpk iqtsiavckl rasarwavtg
      721 tpiqnnlldm ysllrflrcs pfdeykvwky qvdnntkkgg erlslltrsl llrrtkdqld
      781 sagkplvalp qrstqlhqlk lspeeqsvyn vlfarsrstl qsylqrqeqk negreyaggn
      841 pfervaqdfg inqkeflags qsapqvsstv hvlsmllrlr qccchlsllk valdqtnlhs
      901 egltlsieeq lsaltltelq tpdykstvyl sgtafktdlf eitrestkia hllaelktiq
      961 shsepqksvv vsqwtsmlkv vsvhlqrlgl kyatvdgsvn pkqrmdvvee fnnnprgpqv
     1021 llvsllaggv glnltggnhl flldmhwnpa ledqacdriy rvgqqkdvvi hrfvcegtve
     1081 ekilqlqrsk kvlaqqvlsg kgetftkltl ddlknlfgi
//
LOCUS       XP_053912194            1119 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription termination factor 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912194
VERSION     XP_053912194.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056219.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1119
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1119
                     /product="transcription termination factor 2 isoform X3"
                     /calculated_mol_wt=123122
     Region          <509..1099
                     /region_name="HepA"
                     /note="Superfamily II DNA or RNA helicase, SNF2 family
                     [Transcription, Replication, recombination, and repair];
                     COG0553"
                     /db_xref="CDD:440319"
     Region          522..761
                     /region_name="DEXHc_TTF2"
                     /note="DEAH-box helicase domain of TTF2; cd18072"
                     /db_xref="CDD:350830"
     Site            order(550..556,610,691..692)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350830"
     CDS             1..1119
                     /gene="TTF2"
                     /coded_by="XM_054056219.1:169..3528"
                     /db_xref="GeneID:104055834"
ORIGIN      
        1 mvelqvliqh qgkdeyqlly rctkgysngk twcgsipwqd pkatkvskal esqhniapvf
       61 npsgqrnpfk vidkncdpss wkqikqgnge esrakgvkae kesmlashke kksipassie
      121 kepleglktk nkqstgnktd pvfkdstvpg sklgisenck gkntlwekek yggsgreskk
      181 ssecvekepg gssklfplsl gkqsastkpa edeqlggksl nscedketrk keyvggknge
      241 vklmskedmi spvagkdafq hpaqkgggva apsrtqirpe lgqaagavsg rdtdgvgfvy
      301 tssgksepee svedlqsrei lagksgtslp gaaashhveg lqdpkalynh lvvqlrqkks
      361 vlatvntqrl pdkgerlrkq vqdleaalsa fkistagttg kgehstssdy heeplptqld
      421 rpggtklitp qllqnpasgt sscshshtsa attlgsseyg sshgfgmnsg vqnlyggrmt
      481 edriravhsa tseainhlhk slescpteqt taenpsglkv pllphqkqal awllwresqr
      541 pcggiladdm glgktltmia liltqkqlnt ekrkeeklei wlskndsavi pshstliicp
      601 aslihhwkke idrrvsygkl rvclyhgsnr ekhaevltgy divvttysll skevptskee
      661 gevpaedhdv rsgsspcspl lriawariil deahniknpk iqtsiavckl rasarwavtg
      721 tpiqnnlldm ysllrflrcs pfdeykvwky qvdnntkkgg erlslltrsl llrrtkdqld
      781 sagkplvalp qrstqlhqlk lspeeqsvyn vlfarsrstl qsylqrqeqk negreyaggn
      841 pfervaqdfg inqkeflags qsapqvsstv hvlsmllrlr qccchlsllk valdqtnlhs
      901 egltlsieeq lsaltltelq tpdykstvyl sgtafktdlf eitrestkia hllaelktiq
      961 shsepqksvv vsqwtsmlkv vsvhlqrlgl kyatvdgsvn pkqrmdvvee fnnnprgpqv
     1021 llvsllaggv glnltggnhl flldmhwnpa ledqacdriy rvgqqkdvvi hrfvcegtve
     1081 ekilqlqrsk kvlaqqvlsg kgetftkltl ddlknlfgi
//
LOCUS       XP_009554757             520 aa            linear   VRT 09-MAR-2023
DEFINITION  protein O-glucosyltransferase 3 [Cuculus canorus].
ACCESSION   XP_009554757
VERSION     XP_009554757.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556462.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554757.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..520
                     /product="protein O-glucosyltransferase 3"
                     /calculated_mol_wt=59891
     Region          39..143
                     /region_name="Filamin"
                     /note="Filamin/ABP280 repeat; pfam00630"
                     /db_xref="CDD:395505"
     Region          164..498
                     /region_name="Glyco_transf_90"
                     /note="Glycosyl transferase family 90; cl23835"
                     /db_xref="CDD:329112"
     CDS             1..520
                     /gene="POGLUT3"
                     /coded_by="XM_009556462.2:53..1615"
                     /db_xref="GeneID:104055353"
ORIGIN      
        1 mpwvpgampw vpgallsprg vcvwlllaaa grraaggavs argslawgpg lraelalpvr
       61 hfyiqavsea grnfsrsppg atqfkvvika lspkevtriy tprpldrndg tflmryrmye
      121 svkkglkiei fygdqhvaqs pyilkgpvyh eycdcpeedp etwqnimscp seepqitkdf
      181 ssfptidlqr mlkeiptkfs qsrgaivhyt ilnnriyrrs lgkytdfkmf sdemflslar
      241 kvhlpdvefy lnvgdwpvey rktndtpgpi piiswcgsvd srdivlptyd vthstletlr
      301 gvtndllsiq gntgpfwenk teralfrgrd sreerlhlvk lskenpelld agitgyfffr
      361 ekekelgkvq lmgffdffky kyqvnvdgtv aayrfpylll gdslvlkqds qyyehfyigl
      421 kpwkhyvpvk rnledlleki kwakendeaa rkiakegqlm arellqphrl ycyyykvlqk
      481 yaehqaskpe irdgmelvpq pddrdsvcsc hrnkplredl
//
LOCUS       XP_053912195             643 aa            linear   VRT 09-MAR-2023
DEFINITION  testis-specific gene 10 protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053912195
VERSION     XP_053912195.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056220.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..643
                     /product="testis-specific gene 10 protein isoform X1"
                     /calculated_mol_wt=74023
     Region          <16..>624
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..643
                     /gene="TSGA10"
                     /coded_by="XM_054056220.1:506..2437"
                     /db_xref="GeneID:104056704"
ORIGIN      
        1 mskkisfiqg pssdpevlkl wrereelksa lkklerhvve iqgnfkvlta erdnavslye
       61 qaqeeisrlr qelikcagtt ksavtahavl khveierdta lldfrrmate rdslreqlki
      121 sqeiafnera hleqrieele ttiqnldsec leqmtkvalm kdtidsletd mkrlarrald
      181 setelsrqea eyvslsllke kteqslseaq qnlaeknyei qltqnkimll dekidnfsrq
      241 nfvqqeeict lkeaiaqlgk ekaslqdrle egrekiatfe eslavkekti sdfriltsel
      301 krstkkcaea lcahekdias lhqqlqnane elaqankdre slaqengrlq ehlsnikqen
      361 qvyldgeplt kkkncifqvm hsivgsssev lhqkvakyqn elddmklkaq nlnmdiaslk
      421 gvlnskeren ckllknyhra rehgesweak whqaeadcst vrlalitaes enrmlkekie
      481 sleteveqlq recesshsei ellrkqlene gaskkrlesl fvsshekefq sqlakqgkds
      541 eiqflkeqls vaenklaaqs qnltqlrnra aqleselnia krqleterfe reravrelrh
      601 qsrtvsyqls stlrslsper shheppdwsl dcsqegnscs kds
//
LOCUS       XP_053912196             643 aa            linear   VRT 09-MAR-2023
DEFINITION  testis-specific gene 10 protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053912196
VERSION     XP_053912196.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056221.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..643
                     /product="testis-specific gene 10 protein isoform X1"
                     /calculated_mol_wt=74023
     Region          <16..>624
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..643
                     /gene="TSGA10"
                     /coded_by="XM_054056221.1:3095..5026"
                     /db_xref="GeneID:104056704"
ORIGIN      
        1 mskkisfiqg pssdpevlkl wrereelksa lkklerhvve iqgnfkvlta erdnavslye
       61 qaqeeisrlr qelikcagtt ksavtahavl khveierdta lldfrrmate rdslreqlki
      121 sqeiafnera hleqrieele ttiqnldsec leqmtkvalm kdtidsletd mkrlarrald
      181 setelsrqea eyvslsllke kteqslseaq qnlaeknyei qltqnkimll dekidnfsrq
      241 nfvqqeeict lkeaiaqlgk ekaslqdrle egrekiatfe eslavkekti sdfriltsel
      301 krstkkcaea lcahekdias lhqqlqnane elaqankdre slaqengrlq ehlsnikqen
      361 qvyldgeplt kkkncifqvm hsivgsssev lhqkvakyqn elddmklkaq nlnmdiaslk
      421 gvlnskeren ckllknyhra rehgesweak whqaeadcst vrlalitaes enrmlkekie
      481 sleteveqlq recesshsei ellrkqlene gaskkrlesl fvsshekefq sqlakqgkds
      541 eiqflkeqls vaenklaaqs qnltqlrnra aqleselnia krqleterfe reravrelrh
      601 qsrtvsyqls stlrslsper shheppdwsl dcsqegnscs kds
//
LOCUS       XP_053912197             615 aa            linear   VRT 09-MAR-2023
DEFINITION  testis-specific gene 10 protein isoform X2 [Cuculus canorus].
ACCESSION   XP_053912197
VERSION     XP_053912197.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056222.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..615
                     /product="testis-specific gene 10 protein isoform X2"
                     /calculated_mol_wt=70930
     Region          <22..377
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          <252..550
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..615
                     /gene="TSGA10"
                     /coded_by="XM_054056222.1:449..2296"
                     /db_xref="GeneID:104056704"
ORIGIN      
        1 mskkisfiqg pssdpevlkl wrereelksa lkklerhvve iqgnfkvlta erdnavslye
       61 qaqeeisrlr qelikcagtt ksavtahavl khveierdta lldfrrmate rdslreqlki
      121 sqeiafnera hleqrieele ttiqnldsec leqmtkvalm kdtidsletd mkrlarrald
      181 setelsrqea eyvslsllke kteqslseaq qnlaeknyei qltqnkimll dekidnfsrq
      241 nfvqqeeict lkeaiaqlgk ekaslqdrle egrekiatfe eslavkekti sdfriltsel
      301 krstkkcaea lcahekdias lhqqlqnane elaqankdre slaqengrlq ehlsnikqen
      361 qvlhqkvaky qnelddmklk aqnlnmdias lkgvlnsker enckllknyh rarehgeswe
      421 akwhqaeadc stvrlalita esenrmlkek iesleteveq lqrecesshs eiellrkqle
      481 negaskkrle slfvssheke fqsqlakqgk dseiqflkeq lsvaenklaa qsqnltqlrn
      541 raaqleseln iakrqleter fereravrel rhqsrtvsyq lsstlrslsp ershheppdw
      601 sldcsqegns cskds
//
LOCUS       XP_053912199             215 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Hikeshi isoform X1 [Cuculus canorus].
ACCESSION   XP_053912199
VERSION     XP_053912199.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056224.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..215
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..215
                     /product="protein Hikeshi isoform X1"
                     /calculated_mol_wt=23434
     Region          1..213
                     /region_name="DUF775"
                     /note="Protein of unknown function (DUF775); pfam05603"
                     /db_xref="CDD:461690"
     CDS             1..215
                     /gene="HIKESHI"
                     /coded_by="XM_054056224.1:104..751"
                     /db_xref="GeneID:104064149"
ORIGIN      
        1 mfgclvagrl vsmmlglcql ggqqpllmdl atssapyfps thmgsedyen inhvvvfmlg
       61 tipfpegmgg svyfcypdqn giavwqllgf vtnekpsaif kisglksgkg sqhpfgamnl
      121 pqtptvaqig isvellenla qqtpvanaav ssvdsfteft qkmldnfynf assfavtqaq
      181 mtpnpseafi panvvlkwye nfqrrltqnp lfwkt
//
LOCUS       XP_053912200             197 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Hikeshi isoform X2 [Cuculus canorus].
ACCESSION   XP_053912200
VERSION     XP_053912200.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056225.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..197
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..197
                     /product="protein Hikeshi isoform X2"
                     /calculated_mol_wt=21637
     Region          1..195
                     /region_name="DUF775"
                     /note="Protein of unknown function (DUF775); pfam05603"
                     /db_xref="CDD:461690"
     CDS             1..197
                     /gene="HIKESHI"
                     /coded_by="XM_054056225.1:119..712"
                     /db_xref="GeneID:104064149"
ORIGIN      
        1 mfgclvagrl vqaapqqvae dkfvfdlpdy eninhvvvfm lgtipfpegm ggsvyfcypd
       61 qngiavwqll gfvtnekpsa ifkisglksg kgsqhpfgam nlpqtptvaq igisvellen
      121 laqqtpvana avssvdsfte ftqkmldnfy nfassfavtq aqmtpnpsea fipanvvlkw
      181 yenfqrrltq nplfwkt
//
LOCUS       XP_053912201             158 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Hikeshi isoform X3 [Cuculus canorus].
ACCESSION   XP_053912201
VERSION     XP_053912201.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056226.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..158
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..158
                     /product="protein Hikeshi isoform X3"
                     /calculated_mol_wt=17274
     Region          1..156
                     /region_name="DUF775"
                     /note="Protein of unknown function (DUF775); pfam05603"
                     /db_xref="CDD:461690"
     CDS             1..158
                     /gene="HIKESHI"
                     /coded_by="XM_054056226.1:440..916"
                     /db_xref="GeneID:104064149"
ORIGIN      
        1 mlgtipfpeg mggsvyfcyp dqngiavwql lgfvtnekps aifkisglks gkgsqhpfga
       61 mnlpqtptva qigisvelle nlaqqtpvan aavssvdsft eftqkmldnf ynfassfavt
      121 qaqmtpnpse afipanvvlk wyenfqrrlt qnplfwkt
//
LOCUS       XP_009564741             158 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Hikeshi isoform X3 [Cuculus canorus].
ACCESSION   XP_009564741
VERSION     XP_009564741.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566446.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..158
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..158
                     /product="protein Hikeshi isoform X3"
                     /calculated_mol_wt=17274
     Region          1..156
                     /region_name="DUF775"
                     /note="Protein of unknown function (DUF775); pfam05603"
                     /db_xref="CDD:461690"
     CDS             1..158
                     /gene="HIKESHI"
                     /coded_by="XM_009566446.2:107..583"
                     /db_xref="GeneID:104064149"
ORIGIN      
        1 mlgtipfpeg mggsvyfcyp dqngiavwql lgfvtnekps aifkisglks gkgsqhpfga
       61 mnlpqtptva qigisvelle nlaqqtpvan aavssvdsft eftqkmldnf ynfassfavt
      121 qaqmtpnpse afipanvvlk wyenfqrrlt qnplfwkt
//
LOCUS       XP_053912202             158 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Hikeshi isoform X3 [Cuculus canorus].
ACCESSION   XP_053912202
VERSION     XP_053912202.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056227.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..158
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..158
                     /product="protein Hikeshi isoform X3"
                     /calculated_mol_wt=17274
     Region          1..156
                     /region_name="DUF775"
                     /note="Protein of unknown function (DUF775); pfam05603"
                     /db_xref="CDD:461690"
     CDS             1..158
                     /gene="HIKESHI"
                     /coded_by="XM_054056227.1:107..583"
                     /db_xref="GeneID:104064149"
ORIGIN      
        1 mlgtipfpeg mggsvyfcyp dqngiavwql lgfvtnekps aifkisglks gkgsqhpfga
       61 mnlpqtptva qigisvelle nlaqqtpvan aavssvdsft eftqkmldnf ynfassfavt
      121 qaqmtpnpse afipanvvlk wyenfqrrlt qnplfwkt
//
LOCUS       XP_009556171             475 aa            linear   VRT 09-MAR-2023
DEFINITION  coagulation factor X [Cuculus canorus].
ACCESSION   XP_009556171
VERSION     XP_009556171.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557876.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556171.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..475
                     /product="coagulation factor X"
                     /calculated_mol_wt=53133
     Region          24..85
                     /region_name="GLA"
                     /note="Domain containing Gla (gamma-carboxyglutamate)
                     residues; smart00069"
                     /db_xref="CDD:214503"
     Region          86..122
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; cd00054"
                     /db_xref="CDD:238011"
     Site            order(86,89,103)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238011"
     Region          129..167
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          240..468
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cd00190"
                     /db_xref="CDD:238113"
     Site            240
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(281,327,424)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(418,443,445)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..475
                     /gene="F10"
                     /coded_by="XM_009557876.2:191..1618"
                     /db_xref="GeneID:104056614"
ORIGIN      
        1 mparllllll caalpgelra qtgvfikken adkflerskr ansfleelkk gnierecnee
       61 rcskeearea fedrekteef wniyvdgnqc ssnpchyggh ckdgigsytc scldgyqgkn
      121 cefvipkyck inngdceqfc sikksaqkgv lcscakgyvl aedgkhcvss vkypcgkvfv
      181 krkkrsvlfp adnsnvttdq dvfptngtsl eediftttet ptlrpgnetg sktpyvitri
      241 vggdecllge cpwqavllne egeefcggti lnenfiltaa hcmnqskeik vvvgevdrek
      301 kehsetmhtv drilvhskyi aetydndial iklkepikfs eyiiaaclpe adfanevlmn
      361 qrsgtvsgfg refeggrlsk klkvlevpyv drntckqstn faitenmfca gydteqkdac
      421 qgdsggphvt rykdtyfvtg ivswgegcak kgkygvytkl srflrwvrla mrqnl
//
LOCUS       XP_053912203             544 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase PAK 1 [Cuculus canorus].
ACCESSION   XP_053912203
VERSION     XP_053912203.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056228.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..544
                     /product="serine/threonine-protein kinase PAK 1"
                     /calculated_mol_wt=60480
     Region          74..132
                     /region_name="PBD"
                     /note="P21-Rho-binding domain; pfam00786"
                     /db_xref="CDD:395634"
     Site            order(75,78,81,83,86,103,107)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238526"
     Region          248..543
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(275..278,281,283,296,298,327,343..346,388,392..393,
                     395,405..406)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270870"
     CDS             1..544
                     /gene="PAK1"
                     /coded_by="XM_054056228.1:659..2293"
                     /db_xref="GeneID:104064137"
ORIGIN      
        1 msnngveted kppappmrnt stmigsgskd agtlnhgskp lppnpeekkr kdrfyrailp
       61 gdktnkkkek erpeislpsd fehtihvgfd avtgeftgmp eqwarllqts nitkseqkkn
      121 pqavldvlef ynskkisnsq kymsftdkst edynssntln vkavsetpav psvsededde
      181 ddaapppvia prpehtksiy trsvieplpp ptrdvatspi ssptenstta pdmlirntek
      241 qkkkpkmsde eileklrsiv svgdpkkkyt cfekigqgas gtvytamdva tgqevaikqm
      301 nlqqqpkkel iineilvmre nknpnivnyl dsylvgeelw vvmeylaggs ltdvvtetcm
      361 degqiaavcr eclqaleflh snqvihrdik sdnillgmdg svkltdfgfc aqitpeqskr
      421 stmvgtpywm apevvtrkay gpkvdiwslg imaiemiege ppylnenplr alyliatngt
      481 pelqnpekls pifrdflnrc lemdvekrgs akellqhqfl kiakplsslt pliiaakeaa
      541 knnh
//
LOCUS       XP_053912204             544 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase PAK 1 [Cuculus canorus].
ACCESSION   XP_053912204
VERSION     XP_053912204.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056229.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..544
                     /product="serine/threonine-protein kinase PAK 1"
                     /calculated_mol_wt=60480
     Region          74..132
                     /region_name="PBD"
                     /note="P21-Rho-binding domain; pfam00786"
                     /db_xref="CDD:395634"
     Site            order(75,78,81,83,86,103,107)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238526"
     Region          248..543
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(275..278,281,283,296,298,327,343..346,388,392..393,
                     395,405..406)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270870"
     CDS             1..544
                     /gene="PAK1"
                     /coded_by="XM_054056229.1:265..1899"
                     /db_xref="GeneID:104064137"
ORIGIN      
        1 msnngveted kppappmrnt stmigsgskd agtlnhgskp lppnpeekkr kdrfyrailp
       61 gdktnkkkek erpeislpsd fehtihvgfd avtgeftgmp eqwarllqts nitkseqkkn
      121 pqavldvlef ynskkisnsq kymsftdkst edynssntln vkavsetpav psvsededde
      181 ddaapppvia prpehtksiy trsvieplpp ptrdvatspi ssptenstta pdmlirntek
      241 qkkkpkmsde eileklrsiv svgdpkkkyt cfekigqgas gtvytamdva tgqevaikqm
      301 nlqqqpkkel iineilvmre nknpnivnyl dsylvgeelw vvmeylaggs ltdvvtetcm
      361 degqiaavcr eclqaleflh snqvihrdik sdnillgmdg svkltdfgfc aqitpeqskr
      421 stmvgtpywm apevvtrkay gpkvdiwslg imaiemiege ppylnenplr alyliatngt
      481 pelqnpekls pifrdflnrc lemdvekrgs akellqhqfl kiakplsslt pliiaakeaa
      541 knnh
//
LOCUS       XP_053912205             544 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase PAK 1 [Cuculus canorus].
ACCESSION   XP_053912205
VERSION     XP_053912205.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056230.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..544
                     /product="serine/threonine-protein kinase PAK 1"
                     /calculated_mol_wt=60480
     Region          74..132
                     /region_name="PBD"
                     /note="P21-Rho-binding domain; pfam00786"
                     /db_xref="CDD:395634"
     Site            order(75,78,81,83,86,103,107)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238526"
     Region          248..543
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(275..278,281,283,296,298,327,343..346,388,392..393,
                     395,405..406)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270870"
     CDS             1..544
                     /gene="PAK1"
                     /coded_by="XM_054056230.1:412..2046"
                     /db_xref="GeneID:104064137"
ORIGIN      
        1 msnngveted kppappmrnt stmigsgskd agtlnhgskp lppnpeekkr kdrfyrailp
       61 gdktnkkkek erpeislpsd fehtihvgfd avtgeftgmp eqwarllqts nitkseqkkn
      121 pqavldvlef ynskkisnsq kymsftdkst edynssntln vkavsetpav psvsededde
      181 ddaapppvia prpehtksiy trsvieplpp ptrdvatspi ssptenstta pdmlirntek
      241 qkkkpkmsde eileklrsiv svgdpkkkyt cfekigqgas gtvytamdva tgqevaikqm
      301 nlqqqpkkel iineilvmre nknpnivnyl dsylvgeelw vvmeylaggs ltdvvtetcm
      361 degqiaavcr eclqaleflh snqvihrdik sdnillgmdg svkltdfgfc aqitpeqskr
      421 stmvgtpywm apevvtrkay gpkvdiwslg imaiemiege ppylnenplr alyliatngt
      481 pelqnpekls pifrdflnrc lemdvekrgs akellqhqfl kiakplsslt pliiaakeaa
      541 knnh
//
LOCUS       XP_053912207             544 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase PAK 1 [Cuculus canorus].
ACCESSION   XP_053912207
VERSION     XP_053912207.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056232.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..544
                     /product="serine/threonine-protein kinase PAK 1"
                     /calculated_mol_wt=60480
     Region          74..132
                     /region_name="PBD"
                     /note="P21-Rho-binding domain; pfam00786"
                     /db_xref="CDD:395634"
     Site            order(75,78,81,83,86,103,107)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238526"
     Region          248..543
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(275..278,281,283,296,298,327,343..346,388,392..393,
                     395,405..406)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270870"
     CDS             1..544
                     /gene="PAK1"
                     /coded_by="XM_054056232.1:421..2055"
                     /db_xref="GeneID:104064137"
ORIGIN      
        1 msnngveted kppappmrnt stmigsgskd agtlnhgskp lppnpeekkr kdrfyrailp
       61 gdktnkkkek erpeislpsd fehtihvgfd avtgeftgmp eqwarllqts nitkseqkkn
      121 pqavldvlef ynskkisnsq kymsftdkst edynssntln vkavsetpav psvsededde
      181 ddaapppvia prpehtksiy trsvieplpp ptrdvatspi ssptenstta pdmlirntek
      241 qkkkpkmsde eileklrsiv svgdpkkkyt cfekigqgas gtvytamdva tgqevaikqm
      301 nlqqqpkkel iineilvmre nknpnivnyl dsylvgeelw vvmeylaggs ltdvvtetcm
      361 degqiaavcr eclqaleflh snqvihrdik sdnillgmdg svkltdfgfc aqitpeqskr
      421 stmvgtpywm apevvtrkay gpkvdiwslg imaiemiege ppylnenplr alyliatngt
      481 pelqnpekls pifrdflnrc lemdvekrgs akellqhqfl kiakplsslt pliiaakeaa
      541 knnh
//
LOCUS       XP_053912208             544 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase PAK 1 [Cuculus canorus].
ACCESSION   XP_053912208
VERSION     XP_053912208.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056233.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..544
                     /product="serine/threonine-protein kinase PAK 1"
                     /calculated_mol_wt=60480
     Region          74..132
                     /region_name="PBD"
                     /note="P21-Rho-binding domain; pfam00786"
                     /db_xref="CDD:395634"
     Site            order(75,78,81,83,86,103,107)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238526"
     Region          248..543
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(275..278,281,283,296,298,327,343..346,388,392..393,
                     395,405..406)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270870"
     CDS             1..544
                     /gene="PAK1"
                     /coded_by="XM_054056233.1:88..1722"
                     /db_xref="GeneID:104064137"
ORIGIN      
        1 msnngveted kppappmrnt stmigsgskd agtlnhgskp lppnpeekkr kdrfyrailp
       61 gdktnkkkek erpeislpsd fehtihvgfd avtgeftgmp eqwarllqts nitkseqkkn
      121 pqavldvlef ynskkisnsq kymsftdkst edynssntln vkavsetpav psvsededde
      181 ddaapppvia prpehtksiy trsvieplpp ptrdvatspi ssptenstta pdmlirntek
      241 qkkkpkmsde eileklrsiv svgdpkkkyt cfekigqgas gtvytamdva tgqevaikqm
      301 nlqqqpkkel iineilvmre nknpnivnyl dsylvgeelw vvmeylaggs ltdvvtetcm
      361 degqiaavcr eclqaleflh snqvihrdik sdnillgmdg svkltdfgfc aqitpeqskr
      421 stmvgtpywm apevvtrkay gpkvdiwslg imaiemiege ppylnenplr alyliatngt
      481 pelqnpekls pifrdflnrc lemdvekrgs akellqhqfl kiakplsslt pliiaakeaa
      541 knnh
//
LOCUS       XP_053912209             544 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase PAK 1 [Cuculus canorus].
ACCESSION   XP_053912209
VERSION     XP_053912209.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056234.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..544
                     /product="serine/threonine-protein kinase PAK 1"
                     /calculated_mol_wt=60480
     Region          74..132
                     /region_name="PBD"
                     /note="P21-Rho-binding domain; pfam00786"
                     /db_xref="CDD:395634"
     Site            order(75,78,81,83,86,103,107)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238526"
     Region          248..543
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(275..278,281,283,296,298,327,343..346,388,392..393,
                     395,405..406)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270870"
     CDS             1..544
                     /gene="PAK1"
                     /coded_by="XM_054056234.1:42..1676"
                     /db_xref="GeneID:104064137"
ORIGIN      
        1 msnngveted kppappmrnt stmigsgskd agtlnhgskp lppnpeekkr kdrfyrailp
       61 gdktnkkkek erpeislpsd fehtihvgfd avtgeftgmp eqwarllqts nitkseqkkn
      121 pqavldvlef ynskkisnsq kymsftdkst edynssntln vkavsetpav psvsededde
      181 ddaapppvia prpehtksiy trsvieplpp ptrdvatspi ssptenstta pdmlirntek
      241 qkkkpkmsde eileklrsiv svgdpkkkyt cfekigqgas gtvytamdva tgqevaikqm
      301 nlqqqpkkel iineilvmre nknpnivnyl dsylvgeelw vvmeylaggs ltdvvtetcm
      361 degqiaavcr eclqaleflh snqvihrdik sdnillgmdg svkltdfgfc aqitpeqskr
      421 stmvgtpywm apevvtrkay gpkvdiwslg imaiemiege ppylnenplr alyliatngt
      481 pelqnpekls pifrdflnrc lemdvekrgs akellqhqfl kiakplsslt pliiaakeaa
      541 knnh
//
LOCUS       XP_053912210             250 aa            linear   VRT 09-MAR-2023
DEFINITION  aquaporin-11 [Cuculus canorus].
ACCESSION   XP_053912210
VERSION     XP_053912210.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056235.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..250
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..250
                     /product="aquaporin-11"
                     /calculated_mol_wt=26434
     Region          <152..243
                     /region_name="GlpF"
                     /note="Glycerol uptake facilitator or related aquaporin
                     (Major Intrinsic protein Family) [Carbohydrate transport
                     and metabolism]; COG0580"
                     /db_xref="CDD:440345"
     CDS             1..250
                     /gene="AQP11"
                     /coded_by="XM_054056235.1:234..986"
                     /db_xref="GeneID:104064215"
ORIGIN      
        1 mglgavgpsl vllggivaav glcrswtvrr lrgrlrglal ellgtfqvca ctnelcllaa
       61 aepraalslt ygfsvlhgat lsgcscnpcg clqllwagaa ppglaalsia aqfaaaalar
      121 lfmrfvwslg mmephlgalp qgcgnpmqtt eaqafciell fsvvfqltvl raervnpkyk
      181 vhliallitm lvyaggnltg avfnpalafs lhpncfydkf lsyslvywia pslgtilvaf
      241 lcdeilpris
//
LOCUS       XP_053912211             248 aa            linear   VRT 09-MAR-2023
DEFINITION  methylosome subunit pICln isoform X1 [Cuculus canorus].
ACCESSION   XP_053912211
VERSION     XP_053912211.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056236.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..248
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..248
                     /product="methylosome subunit pICln isoform X1"
                     /calculated_mol_wt=27317
     Region          43..>147
                     /region_name="Voldacs"
                     /note="Regulator of volume decrease after cellular
                     swelling; pfam03517"
                     /db_xref="CDD:427344"
     CDS             1..248
                     /gene="CLNS1A"
                     /coded_by="XM_054056236.1:20..766"
                     /db_xref="GeneID:104064216"
ORIGIN      
        1 mveedgggga msflkrfppp aegvrhrqpd teavlggrsl gagtlyiaes rlswlensgv
       61 gfsldyptis lhavsrdlsa ypwehlyvmv nakfeeeetk eapvaegeee dsdddvepia
      121 efrfvpsdks aleamfsamc ecqalhpdpd dedsdndyeg eeydvearel eqgdipsfyt
      181 yeegllhlta egqatlerle gmlaqsvssq ynmagvrted sirefedgme vdiapvvagq
      241 fedaevdh
//
LOCUS       XP_053912212             248 aa            linear   VRT 09-MAR-2023
DEFINITION  methylosome subunit pICln isoform X1 [Cuculus canorus].
ACCESSION   XP_053912212
VERSION     XP_053912212.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056237.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..248
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..248
                     /product="methylosome subunit pICln isoform X1"
                     /calculated_mol_wt=27317
     Region          43..>147
                     /region_name="Voldacs"
                     /note="Regulator of volume decrease after cellular
                     swelling; pfam03517"
                     /db_xref="CDD:427344"
     CDS             1..248
                     /gene="CLNS1A"
                     /coded_by="XM_054056237.1:20..766"
                     /db_xref="GeneID:104064216"
ORIGIN      
        1 mveedgggga msflkrfppp aegvrhrqpd teavlggrsl gagtlyiaes rlswlensgv
       61 gfsldyptis lhavsrdlsa ypwehlyvmv nakfeeeetk eapvaegeee dsdddvepia
      121 efrfvpsdks aleamfsamc ecqalhpdpd dedsdndyeg eeydvearel eqgdipsfyt
      181 yeegllhlta egqatlerle gmlaqsvssq ynmagvrted sirefedgme vdiapvvagq
      241 fedaevdh
//
LOCUS       XP_053912213             248 aa            linear   VRT 09-MAR-2023
DEFINITION  methylosome subunit pICln isoform X1 [Cuculus canorus].
ACCESSION   XP_053912213
VERSION     XP_053912213.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056238.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..248
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..248
                     /product="methylosome subunit pICln isoform X1"
                     /calculated_mol_wt=27317
     Region          43..>147
                     /region_name="Voldacs"
                     /note="Regulator of volume decrease after cellular
                     swelling; pfam03517"
                     /db_xref="CDD:427344"
     CDS             1..248
                     /gene="CLNS1A"
                     /coded_by="XM_054056238.1:20..766"
                     /db_xref="GeneID:104064216"
ORIGIN      
        1 mveedgggga msflkrfppp aegvrhrqpd teavlggrsl gagtlyiaes rlswlensgv
       61 gfsldyptis lhavsrdlsa ypwehlyvmv nakfeeeetk eapvaegeee dsdddvepia
      121 efrfvpsdks aleamfsamc ecqalhpdpd dedsdndyeg eeydvearel eqgdipsfyt
      181 yeegllhlta egqatlerle gmlaqsvssq ynmagvrted sirefedgme vdiapvvagq
      241 fedaevdh
//
LOCUS       XP_053912214             247 aa            linear   VRT 09-MAR-2023
DEFINITION  methylosome subunit pICln isoform X2 [Cuculus canorus].
ACCESSION   XP_053912214
VERSION     XP_053912214.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056239.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..247
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..247
                     /product="methylosome subunit pICln isoform X2"
                     /calculated_mol_wt=27188
     Region          43..>146
                     /region_name="Voldacs"
                     /note="Regulator of volume decrease after cellular
                     swelling; pfam03517"
                     /db_xref="CDD:427344"
     CDS             1..247
                     /gene="CLNS1A"
                     /coded_by="XM_054056239.1:20..763"
                     /db_xref="GeneID:104064216"
ORIGIN      
        1 mveedgggga msflkrfppp aegvrhrqpd teavlggrsl gagtlyiaes rlswlensgv
       61 gfsldyptis lhavsrdlsa ypwehlyvmv nakfeeetke apvaegeeed sdddvepiae
      121 frfvpsdksa leamfsamce cqalhpdpdd edsdndyege eydvearele qgdipsfyty
      181 eegllhltae gqatlerleg mlaqsvssqy nmagvrteds irefedgmev diapvvagqf
      241 edaevdh
//
LOCUS       XP_053912216             260 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat domain-containing protein 54 [Cuculus canorus].
ACCESSION   XP_053912216
VERSION     XP_053912216.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056241.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..260
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..260
                     /product="ankyrin repeat domain-containing protein 54"
                     /calculated_mol_wt=28043
     Region          <74..>176
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          74..100
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(75..76,79..81,83..84,88,91,100,102,104,108..109,
                     112..114,116..117,121,124,133,135,137,141..142,145..147,
                     149..150,154,157,166)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          102..133
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          135..166
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..260
                     /gene="ANKRD54"
                     /coded_by="XM_054056241.1:26..808"
                     /db_xref="GeneID:104065916"
ORIGIN      
        1 meggggsgaa atpgaagpev algaaagapl gylhvlwqre epagkiparr lrraarlhrr
       61 lgptgkesha lkrlreaang ndldtvqqll edgtdpcaad dkgrtalhfa scngndhivq
      121 llldhgadpn qrdglgntpl hlaactnhvp vittllrgga rvdaldragr tplhlakskl
      181 nilqeglshs leavrlevkq iiqmlreyld rlgrheqkeq lddlctrlqm tstkeqvdev
      241 tdllasftsl slqmqkmekr
//
LOCUS       XP_009554680             379 aa            linear   VRT 09-MAR-2023
DEFINITION  membrane protein MLC1 isoform X1 [Cuculus canorus].
ACCESSION   XP_009554680
VERSION     XP_009554680.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556385.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..379
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..379
                     /product="membrane protein MLC1 isoform X1"
                     /calculated_mol_wt=42185
     CDS             1..379
                     /gene="MLC1"
                     /coded_by="XM_009556385.2:143..1282"
                     /db_xref="GeneID:104055275"
ORIGIN      
        1 mtreegyree fsydrmptle rgkqengnyi pdtkssdlql skrlhpcfsy rtwifsllmg
       61 tcllitsgfs lylgnifpse mdylrcaags cipsavvsfa iarnkinvip nfqilfvstf
      121 avtttcliwf gcklvlnpsa ininfnlill illeifmatt viisarsted ccarkkntay
      181 dstailsnvs fptrilksys vieviigiss vfggiialnm dvlvsgpyls vtffwilvac
      241 fpsaiashva aeypskclve vliaissvts pllftasayl sfsimqvvdi fknyppavkq
      301 sydvlllllm lmlliqaclt igtviqcvny ktkmklhdls wtasqvkkqe yrttevsnnt
      361 lkdfdkdkaw kavvvqmaq
//
LOCUS       XP_053912217             356 aa            linear   VRT 09-MAR-2023
DEFINITION  membrane protein MLC1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912217
VERSION     XP_053912217.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056242.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..356
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..356
                     /product="membrane protein MLC1 isoform X2"
                     /calculated_mol_wt=39701
     CDS             1..356
                     /gene="MLC1"
                     /coded_by="XM_054056242.1:143..1213"
                     /db_xref="GeneID:104055275"
ORIGIN      
        1 mtreegyree fsydrmptle rgkqengnyi pdtkssdlql skrlhpcfsy rtwifsllmg
       61 tcllitsgfs lylgnifpse mdylrcaags ilfvstfavt ttcliwfgck lvlnpsaini
      121 nfnlillill eifmattvii sarstedcca rkkntaydst ailsnvsfpt rilksysvie
      181 viigissvfg giialnmdvl vsgpylsvtf fwilvacfps aiashvaaey pskclvevli
      241 aissvtspll ftasaylsfs imqvvdifkn yppavkqsyd vlllllmlml liqacltigt
      301 viqcvnyktk mklhdlswta sqvkkqeyrt tevsnntlkd fdkdkawkav vvqmaq
//
LOCUS       XP_053912218             345 aa            linear   VRT 09-MAR-2023
DEFINITION  membrane protein MLC1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912218
VERSION     XP_053912218.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056243.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..345
                     /product="membrane protein MLC1 isoform X3"
                     /calculated_mol_wt=38430
     CDS             1..345
                     /gene="MLC1"
                     /coded_by="XM_054056243.1:143..1180"
                     /db_xref="GeneID:104055275"
ORIGIN      
        1 mtreegyree fsydrmptle rgkqengnyi pdtkssdlql skrlhpcfsy rtwifsllmg
       61 tcllitsgfs lylgnifpse mdylrcaags cipsavvsfa iarnkinvin fnlillille
      121 ifmattviis arstedccar kkntaydsta ilsnvsfptr ilksysviev iigissvfgg
      181 iialnmdvlv sgpylsvtff wilvacfpsa iashvaaeyp skclvevlia issvtspllf
      241 tasaylsfsi mqvvdifkny ppavkqsydv lllllmlmll iqacltigtv iqcvnyktkm
      301 klhdlswtas qvkkqeyrtt evsnntlkdf dkdkawkavv vqmaq
//
LOCUS       XP_053912219             299 aa            linear   VRT 09-MAR-2023
DEFINITION  membrane protein MLC1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053912219
VERSION     XP_053912219.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056244.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..299
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..299
                     /product="membrane protein MLC1 isoform X4"
                     /calculated_mol_wt=32835
     CDS             1..299
                     /gene="MLC1"
                     /coded_by="XM_054056244.1:193..1092"
                     /db_xref="GeneID:104055275"
ORIGIN      
        1 mdylrcaags cipsavvsfa iarnkinvip nfqilfvstf avtttcliwf gcklvlnpsa
       61 ininfnlill illeifmatt viisarsted ccarkkntay dstailsnvs fptrilksys
      121 vieviigiss vfggiialnm dvlvsgpyls vtffwilvac fpsaiashva aeypskclve
      181 vliaissvts pllftasayl sfsimqvvdi fknyppavkq sydvlllllm lmlliqaclt
      241 igtviqcvny ktkmklhdls wtasqvkkqe yrttevsnnt lkdfdkdkaw kavvvqmaq
//
LOCUS       XP_053912220             276 aa            linear   VRT 09-MAR-2023
DEFINITION  membrane protein MLC1 isoform X5 [Cuculus canorus].
ACCESSION   XP_053912220
VERSION     XP_053912220.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056245.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..276
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..276
                     /product="membrane protein MLC1 isoform X5"
                     /calculated_mol_wt=30351
     CDS             1..276
                     /gene="MLC1"
                     /coded_by="XM_054056245.1:194..1024"
                     /db_xref="GeneID:104055275"
ORIGIN      
        1 mdylrcaags ilfvstfavt ttcliwfgck lvlnpsaini nfnlillill eifmattvii
       61 sarstedcca rkkntaydst ailsnvsfpt rilksysvie viigissvfg giialnmdvl
      121 vsgpylsvtf fwilvacfps aiashvaaey pskclvevli aissvtspll ftasaylsfs
      181 imqvvdifkn yppavkqsyd vlllllmlml liqacltigt viqcvnyktk mklhdlswta
      241 sqvkkqeyrt tevsnntlkd fdkdkawkav vvqmaq
//
LOCUS       XP_053912221             324 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 51G2 [Cuculus canorus].
ACCESSION   XP_053912221
VERSION     XP_053912221.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056246.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..324
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..324
                     /product="olfactory receptor 51G2"
                     /calculated_mol_wt=36653
     Region          34..308
                     /region_name="7tmA_OR51-like"
                     /note="olfactory receptor family 51 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15222"
                     /db_xref="CDD:320350"
     Region          35..61
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320350"
     Region          68..94
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320350"
     Site            order(90,93..94,106..111,113..114,117,162,164..168,204,
                     207..209,211..213,215..216,261,264..265,267..268,271,
                     279..280,282..284,287,290..291)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320350"
     Region          106..136
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320350"
     Region          149..170
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320350"
     Region          204..234
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320350"
     Region          241..271
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320350"
     Region          280..305
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320350"
     CDS             1..324
                     /gene="LOC104056045"
                     /coded_by="XM_054056246.1:123..1097"
                     /db_xref="GeneID:104056045"
ORIGIN      
        1 mehdshttwe fngsfyqpsa flmmgipgle alhhwisipf cvlylvallg nctilfiikk
       61 tqslhepmyy flsmlavtdl vlvlctlptt lgifwfnmqr igfdacltqm yfihtlsfie
      121 ssvllamafd rfvaishplr hpsiltkttv ikiglaivlr gvvsllpipf llkrltycrk
      181 telshsfcfh pdimnlacad ikvnvfygmv illstvgmdf ifivlsyili iktiiglatk
      241 eeclkalntc vshicavlvf fipmiglsmi hrfgknvppl vntlvaytyl iippalnpii
      301 ysiksshire allrtlwrks esnw
//
LOCUS       XP_053912222             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 51E2-like [Cuculus canorus].
ACCESSION   XP_053912222
VERSION     XP_053912222.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056247.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 51E2-like"
                     /calculated_mol_wt=34888
     Region          28..301
                     /region_name="7tmA_OR51-like"
                     /note="olfactory receptor family 51 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15222"
                     /db_xref="CDD:320350"
     Region          28..54
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320350"
     Region          61..87
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320350"
     Site            order(83,86..87,99..104,106..107,110,155,157..161,197,
                     200..202,204..206,208..209,254,257..258,260..261,264,
                     272..273,275..277,280,283..284)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320350"
     Region          99..129
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320350"
     Region          142..163
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320350"
     Region          197..227
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320350"
     Region          234..264
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320350"
     Region          273..298
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320350"
     CDS             1..318
                     /gene="LOC104056055"
                     /coded_by="XM_054056247.1:159..1115"
                     /db_xref="GeneID:104056055"
ORIGIN      
        1 mpfpnssdls pssfilasip gleaahvwma illcsvylla vtgncavlfi vkiepslhtp
       61 myfflcmlaa idltlststv prvlsfywfn treisfgacl vqmflihtls aiestvllam
      121 amdryvaich plrhaailtn attakigvaa margvlfflp lplllvplpf crsrvlshsf
      181 clhqdvmnla canttpsvvy gltaillvmg ldailiclsy iliikavlrl aswkerlkaf
      241 stciahicvv ltfyvpligl svvhrfgkdl aplvhivmgn vyilvpavah piiygvrtkv
      301 iqrrilnfih icndrpaq
//
LOCUS       XP_053912223             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 51E2-like [Cuculus canorus].
ACCESSION   XP_053912223
VERSION     XP_053912223.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056248.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 51E2-like"
                     /calculated_mol_wt=34888
     Region          28..301
                     /region_name="7tmA_OR51-like"
                     /note="olfactory receptor family 51 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15222"
                     /db_xref="CDD:320350"
     Region          28..54
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320350"
     Region          61..87
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320350"
     Site            order(83,86..87,99..104,106..107,110,155,157..161,197,
                     200..202,204..206,208..209,254,257..258,260..261,264,
                     272..273,275..277,280,283..284)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320350"
     Region          99..129
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320350"
     Region          142..163
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320350"
     Region          197..227
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320350"
     Region          234..264
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320350"
     Region          273..298
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320350"
     CDS             1..318
                     /gene="LOC104056055"
                     /coded_by="XM_054056248.1:2377..3333"
                     /db_xref="GeneID:104056055"
ORIGIN      
        1 mpfpnssdls pssfilasip gleaahvwma illcsvylla vtgncavlfi vkiepslhtp
       61 myfflcmlaa idltlststv prvlsfywfn treisfgacl vqmflihtls aiestvllam
      121 amdryvaich plrhaailtn attakigvaa margvlfflp lplllvplpf crsrvlshsf
      181 clhqdvmnla canttpsvvy gltaillvmg ldailiclsy iliikavlrl aswkerlkaf
      241 stciahicvv ltfyvpligl svvhrfgkdl aplvhivmgn vyilvpavah piiygvrtkv
      301 iqrrilnfih icndrpaq
//
LOCUS       XP_053912224             204 aa            linear   VRT 09-MAR-2023
DEFINITION  leukemia-associated protein 7 [Cuculus canorus].
ACCESSION   XP_053912224
VERSION     XP_053912224.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056249.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 39% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..204
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..204
                     /product="leukemia-associated protein 7"
                     /calculated_mol_wt=23311
     Region          <59..167
                     /region_name="DLEU7"
                     /note="Leukemia-associated protein 7; pfam15760"
                     /db_xref="CDD:406245"
     CDS             1..204
                     /gene="DLEU7"
                     /coded_by="XM_054056249.1:1..615"
                     /db_xref="GeneID:128850927"
ORIGIN      
        1 masgknrtgg rgcsaqllll alshrlqtpe lsqqnwphgl spphqpkrla wpgltrhetl
       61 qetalrskls qlievtswlv qieqmlllpv lqqhplsfhp kdsiefrnic scmalrregq
      121 qfernlheyh qclktiiekl icslavvpsd sytlirsalr qilqnllgnv kqqgslakeq
      181 akqmscnrsi ktrdnwkges wrfy
//
LOCUS       XP_009568936             156 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM domain only protein 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_009568936
VERSION     XP_009568936.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009570641.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..156
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..156
                     /product="LIM domain only protein 3 isoform X1"
                     /calculated_mol_wt=17768
     Region          24..78
                     /region_name="LIM1_LMO1_LMO3"
                     /note="The first LIM domain of LMO1 and LMO3 (LIM domain
                     only protein 1 and 3); cd09388"
                     /db_xref="CDD:188774"
     Site            order(24,27,45,48,51,54,74,77)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188774"
     Region          88..142
                     /region_name="LIM2_LMO1_LMO3"
                     /note="The second LIM domain of LMO1 and LMO3 (LIM domain
                     only protein 1 and 3); cd09389"
                     /db_xref="CDD:188775"
     Site            order(88,91,110,113,116,119,138,141)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188775"
     CDS             1..156
                     /gene="LMO3"
                     /coded_by="XM_009570641.2:120..590"
                     /db_xref="GeneID:104067847"
ORIGIN      
        1 mqkkeksfgi qmlsvqpdtk pkgcagcnrk ikdryllkal dkywhedclk caccdcrlge
       61 vgstlytkan lilcrrdylr lfgvtgncaa csklipafem vmrakdnvyh ldcfacqlcn
      121 qrfcvgdkff lknnmilcqt dyeeglmkeg yapqvr
//
LOCUS       XP_009568937             145 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM domain only protein 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_009568937
VERSION     XP_009568937.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009570642.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..145
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..145
                     /product="LIM domain only protein 3 isoform X2"
                     /calculated_mol_wt=16462
     Region          13..67
                     /region_name="LIM1_LMO1_LMO3"
                     /note="The first LIM domain of LMO1 and LMO3 (LIM domain
                     only protein 1 and 3); cd09388"
                     /db_xref="CDD:188774"
     Site            order(13,16,34,37,40,43,63,66)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188774"
     Region          77..131
                     /region_name="LIM2_LMO1_LMO3"
                     /note="The second LIM domain of LMO1 and LMO3 (LIM domain
                     only protein 1 and 3); cd09389"
                     /db_xref="CDD:188775"
     Site            order(77,80,99,102,105,108,127,130)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188775"
     CDS             1..145
                     /gene="LMO3"
                     /coded_by="XM_009570642.2:495..932"
                     /db_xref="GeneID:104067847"
ORIGIN      
        1 mlsvqpdtkp kgcagcnrki kdryllkald kywhedclkc accdcrlgev gstlytkanl
       61 ilcrrdylrl fgvtgncaac sklipafemv mrakdnvyhl dcfacqlcnq rfcvgdkffl
      121 knnmilcqtd yeeglmkegy apqvr
//
LOCUS       XP_009568938             145 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM domain only protein 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_009568938
VERSION     XP_009568938.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009570643.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..145
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..145
                     /product="LIM domain only protein 3 isoform X2"
                     /calculated_mol_wt=16462
     Region          13..67
                     /region_name="LIM1_LMO1_LMO3"
                     /note="The first LIM domain of LMO1 and LMO3 (LIM domain
                     only protein 1 and 3); cd09388"
                     /db_xref="CDD:188774"
     Site            order(13,16,34,37,40,43,63,66)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188774"
     Region          77..131
                     /region_name="LIM2_LMO1_LMO3"
                     /note="The second LIM domain of LMO1 and LMO3 (LIM domain
                     only protein 1 and 3); cd09389"
                     /db_xref="CDD:188775"
     Site            order(77,80,99,102,105,108,127,130)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188775"
     CDS             1..145
                     /gene="LMO3"
                     /coded_by="XM_009570643.2:275..712"
                     /db_xref="GeneID:104067847"
ORIGIN      
        1 mlsvqpdtkp kgcagcnrki kdryllkald kywhedclkc accdcrlgev gstlytkanl
       61 ilcrrdylrl fgvtgncaac sklipafemv mrakdnvyhl dcfacqlcnq rfcvgdkffl
      121 knnmilcqtd yeeglmkegy apqvr
//
LOCUS       XP_009568940             145 aa            linear   VRT 09-MAR-2023
DEFINITION  LIM domain only protein 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_009568940
VERSION     XP_009568940.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009570645.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..145
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..145
                     /product="LIM domain only protein 3 isoform X2"
                     /calculated_mol_wt=16462
     Region          13..67
                     /region_name="LIM1_LMO1_LMO3"
                     /note="The first LIM domain of LMO1 and LMO3 (LIM domain
                     only protein 1 and 3); cd09388"
                     /db_xref="CDD:188774"
     Site            order(13,16,34,37,40,43,63,66)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188774"
     Region          77..131
                     /region_name="LIM2_LMO1_LMO3"
                     /note="The second LIM domain of LMO1 and LMO3 (LIM domain
                     only protein 1 and 3); cd09389"
                     /db_xref="CDD:188775"
     Site            order(77,80,99,102,105,108,127,130)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188775"
     CDS             1..145
                     /gene="LMO3"
                     /coded_by="XM_009570645.2:209..646"
                     /db_xref="GeneID:104067847"
ORIGIN      
        1 mlsvqpdtkp kgcagcnrki kdryllkald kywhedclkc accdcrlgev gstlytkanl
       61 ilcrrdylrl fgvtgncaac sklipafemv mrakdnvyhl dcfacqlcnq rfcvgdkffl
      121 knnmilcqtd yeeglmkegy apqvr
//
LOCUS       XP_053912225            1062 aa            linear   VRT 09-MAR-2023
DEFINITION  cGMP-inhibited 3',5'-cyclic phosphodiesterase 3A isoform X1
            [Cuculus canorus].
ACCESSION   XP_053912225
VERSION     XP_053912225.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056250.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1062
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1062
                     /product="cGMP-inhibited 3',5'-cyclic phosphodiesterase 3A
                     isoform X1"
                     /calculated_mol_wt=116169
     Region          676..937
                     /region_name="PDEase_I"
                     /note="3'5'-cyclic nucleotide phosphodiesterase;
                     pfam00233"
                     /db_xref="CDD:459723"
     CDS             1..1062
                     /gene="PDE3A"
                     /coded_by="XM_054056250.1:236..3424"
                     /db_xref="GeneID:104065616"
ORIGIN      
        1 mpgwesapgr tpggaegkpv eavpgcggrh pvgaaeggsa prsalpppre rcrrrkvswa
       61 lcagslsvll glagaalgag rslvraaall gascggeaaa laagedhlls laatgvvlsc
      121 laavtwlvlk lrqgvlmlav tsaarttslv flervpaswr pylayllgll gillagyadr
      181 lwpprrsepp pehpaaprva deapvlgrrr rsssmlspem sgggkthrrt slpcipreql
      241 mghsewdhkr gprgsqssgt sitvdiavmg eahglitdll adpslppnvc tslrtvsnll
      301 ntqltfqaih kprvnplvsf senytcsdse ecpekgekla ipkrlrrslp pgllrrvsst
      361 wttttsatgl ptlepapvrr drsasikphe ssssstdswn nsilmtitks rsfstsyams
      421 stnhlnakrq srqgippnis pltslchspi qgtpatsptg ktssesfsds tntdtkqglk
      481 phkvltatqs apslsdpivs tsiicsscgr pynqiegadg tldrsdgtah tlnrtddpaq
      541 atsdyetnns dssdivqndd etdcskeqmr kgsicrtytp etiilhplip pedkpilape
      601 plvmdnldpl meqlnswnfp ifdlvekigk kcgrilsqvs yrlfedmglf etfkipvkef
      661 mnyfhalecg yreipyhnri hatdvlhavw ylttqpipgl ptvindhgsa sdsdsdsgit
      721 hghmgyvfsk tytptddsyg clagnipale lmalyvaaam hdydhpgrtn aflvatsapq
      781 avlyndrsvl enhhaaaawn lfmsrpeynf lvnldhvefk hfrflvieai latdlkkhfd
      841 fvakfnakvn ddvgidwtne ndrllvcqmc ikladingpa kckdlhlqwt egivnefyeq
      901 gdeeaslglp ispfmdrsap qlahlqesfi thivgplcns ydsaglmpgk wiedsdesgd
      961 tdeheeeetg emetcenads gkkkfkrrki ycqitqhllq nhkmwkkvie deerlagtek
     1021 qgpeqstlhq sseqiqaire eeeekgkpkr deeenttvep nq
//
LOCUS       XP_053912226             822 aa            linear   VRT 09-MAR-2023
DEFINITION  cGMP-inhibited 3',5'-cyclic phosphodiesterase 3A isoform X2
            [Cuculus canorus].
ACCESSION   XP_053912226
VERSION     XP_053912226.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056251.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..822
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..822
                     /product="cGMP-inhibited 3',5'-cyclic phosphodiesterase 3A
                     isoform X2"
                     /calculated_mol_wt=91370
     Region          436..697
                     /region_name="PDEase_I"
                     /note="3'5'-cyclic nucleotide phosphodiesterase;
                     pfam00233"
                     /db_xref="CDD:459723"
     CDS             1..822
                     /gene="PDE3A"
                     /coded_by="XM_054056251.1:180..2648"
                     /db_xref="GeneID:104065616"
ORIGIN      
        1 mghsewdhkr gprgsqssgt sitvdiavmg eahglitdll adpslppnvc tslrtvsnll
       61 ntqltfqaih kprvnplvsf senytcsdse ecpekgekla ipkrlrrslp pgllrrvsst
      121 wttttsatgl ptlepapvrr drsasikphe ssssstdswn nsilmtitks rsfstsyams
      181 stnhlnakrq srqgippnis pltslchspi qgtpatsptg ktssesfsds tntdtkqglk
      241 phkvltatqs apslsdpivs tsiicsscgr pynqiegadg tldrsdgtah tlnrtddpaq
      301 atsdyetnns dssdivqndd etdcskeqmr kgsicrtytp etiilhplip pedkpilape
      361 plvmdnldpl meqlnswnfp ifdlvekigk kcgrilsqvs yrlfedmglf etfkipvkef
      421 mnyfhalecg yreipyhnri hatdvlhavw ylttqpipgl ptvindhgsa sdsdsdsgit
      481 hghmgyvfsk tytptddsyg clagnipale lmalyvaaam hdydhpgrtn aflvatsapq
      541 avlyndrsvl enhhaaaawn lfmsrpeynf lvnldhvefk hfrflvieai latdlkkhfd
      601 fvakfnakvn ddvgidwtne ndrllvcqmc ikladingpa kckdlhlqwt egivnefyeq
      661 gdeeaslglp ispfmdrsap qlahlqesfi thivgplcns ydsaglmpgk wiedsdesgd
      721 tdeheeeetg emetcenads gkkkfkrrki ycqitqhllq nhkmwkkvie deerlagtek
      781 qgpeqstlhq sseqiqaire eeeekgkpkr deeenttvep nq
//
LOCUS       XP_053912227             726 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier organic anion transporter family member 1C1 isoform
            X1 [Cuculus canorus].
ACCESSION   XP_053912227
VERSION     XP_053912227.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056252.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..726
                     /product="solute carrier organic anion transporter family
                     member 1C1 isoform X1"
                     /calculated_mol_wt=79579
     Region          57..593
                     /region_name="MFS_SLCO1C_OATP1C"
                     /note="Solute carrier organic anion transporter 1C
                     subfamily of the Major Facilitator Superfamily of
                     transporters; cd17459"
                     /db_xref="CDD:341017"
     Site            order(71..72,75..76,79,111,215..216,218..220,223,243,
                     246..247,250,376,379..380,383..385,388,417,421,462..463,
                     467,471,532,535..536,539..540,543)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:341017"
     CDS             1..726
                     /gene="LOC104065623"
                     /coded_by="XM_054056252.1:53..2233"
                     /db_xref="GeneID:104065623"
ORIGIN      
        1 msllpklchr grdiimeiss kentrffsnt tilpvdrssf ksessaskek qsccggikif
       61 lgalsfvyfa kalsgsylks titqierrfd ipsslvgiid gsfeignlli iifvsyfgak
      121 lhrpriigag climsagtfl iampqffmgr yqyerfsstm nstlsvspcl qdksqtplsv
      181 leksqanint gcekeagssm wiyvllgnll rgigetpiqp lgiayiddya ieenaalyig
      241 cvqtvaiigp ifgfllgslc aklyvdigfv dldsitithk dvqwvgawwl gyliagvisv
      301 lagipfwflp khlrktesrk dsstsseqsk fitedskdqh ksyqqqvkia emakdflpsl
      361 knlfgnpvyi lylcasiiqf nsligmvtyk pkyieqqygq tssktnfvig linipavafg
      421 ifsgglimkk frinvlgaak lslgssffgy llflslfamg censdvaglt vsyhgtkqtt
      481 dyeqalfsec nsgclcsknd wdpicgengi tyvsaclagc qasngsgknt vyfncscvgt
      541 lespsrsssa vvgpcqkgke cpkmfqyflv isvitsytls vggtpgyill lrcikphlks
      601 falgiytlai rvlagipapv yfgvaidttc lkwgskrcgg rgacrlydss alryvylglt
      661 lmlgtvsiff svavlwvlrk rssphdetls dtgergacrt ksrkdnfvns dlliqstywp
      721 eketrl
//
LOCUS       XP_053912228             721 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier organic anion transporter family member 1C1 isoform
            X2 [Cuculus canorus].
ACCESSION   XP_053912228
VERSION     XP_053912228.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056253.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..721
                     /product="solute carrier organic anion transporter family
                     member 1C1 isoform X2"
                     /calculated_mol_wt=79238
     Region          57..589
                     /region_name="MFS"
                     /note="Major Facilitator Superfamily; cl28910"
                     /db_xref="CDD:475125"
     Site            order(71..72,75..76,79,111,213..214,216..218,221,241,
                     244..245,248,374,377..378,381..383,386,415,419,460..461,
                     465,469,529,532..533,536..537,540)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:349949"
     CDS             1..721
                     /gene="LOC104065623"
                     /coded_by="XM_054056253.1:404..2569"
                     /db_xref="GeneID:104065623"
ORIGIN      
        1 mtpvhsdhsv kkstmtvete ssnvddsnqe aepaqfldde anknlpvkkn tscctglkmf
       61 laalsfsyls kmlagtimks sitqierrfg ltsstvgfid gsfemgnllv iafvsyfgak
      121 fhrpkviaag cftmalgcfl samphffmgy ykyetasqra ssanltssin pcsphqdvhe
      181 sllevsrsdc dkepssnmwi yillgnmlrg igetpiaplg isylddfake edvpvyvacl
      241 htvamlgpmf gfllgslcar lyvdigfvdl gsititpqds rwvgawwlgf iiggvaslls
      301 aipfcflpks lkkpeeannd ktsynllenm gatrkkptpa kpkprkwset lkdfytslkk
      361 vlgnrmyftf lcssllqfns figfltykpk ymeqqygqta sksnfliglt slppvgigif
      421 lggvimrkyk mgiiaatkfa itmsflayvi tllhffvgce nnvvagmtvs yegktipyhe
      481 naifsdcnsd ckcasnvwdp vcgdngltyv saclagctts vghgkntvfh ncscleasss
      541 wtgnssailg qcpksedcsr nfiyytviqv isgfcyalgg tpaymimfrc vqpelkslav
      601 glytlimrvl agipapvyfg alidktclkw gstscgqrga crlydsnayr yvylglsavl
      661 rgpsylisil fyilikkhyq nknlrpveng gredvpmnke dhckikerlp gssdaenesc
      721 i
//
LOCUS       XP_053912229             711 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier organic anion transporter family member 1C1 isoform
            X3 [Cuculus canorus].
ACCESSION   XP_053912229
VERSION     XP_053912229.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056254.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..711
                     /product="solute carrier organic anion transporter family
                     member 1C1 isoform X3"
                     /calculated_mol_wt=77845
     Region          42..578
                     /region_name="MFS_SLCO1C_OATP1C"
                     /note="Solute carrier organic anion transporter 1C
                     subfamily of the Major Facilitator Superfamily of
                     transporters; cd17459"
                     /db_xref="CDD:341017"
     Site            order(56..57,60..61,64,96,200..201,203..205,208,228,
                     231..232,235,361,364..365,368..370,373,402,406,447..448,
                     452,456,517,520..521,524..525,528)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:341017"
     CDS             1..711
                     /gene="LOC104065623"
                     /coded_by="XM_054056254.1:354..2489"
                     /db_xref="GeneID:104065623"
ORIGIN      
        1 meisskentr ffsnttilpv drssfksess askekqsccg gikiflgals fvyfakalsg
       61 sylkstitqi errfdipssl vgiidgsfei gnlliiifvs yfgaklhrpr iigagclims
      121 agtfliampq ffmgryqyer fsstmnstls vspclqdksq tplsvleksq anintgceke
      181 agssmwiyvl lgnllrgige tpiqplgiay iddyaieena alyigcvqtv aiigpifgfl
      241 lgslcaklyv digfvdldsi tithkdvqwv gawwlgylia gvisvlagip fwflpkhlrk
      301 tesrkdssts seqskfited skdqhksyqq qvkiaemakd flpslknlfg npvyilylca
      361 siiqfnslig mvtykpkyie qqygqtsskt nfviglinip avafgifsgg limkkfrinv
      421 lgaaklslgs sffgyllfls lfamgcensd vagltvsyhg tkqttdyeqa lfsecnsgcl
      481 cskndwdpic gengityvsa clagcqasng sgkntvyfnc scvgtlesps rsssavvgpc
      541 qkgkecpkmf qyflvisvit sytlsvggtp gyilllrcik phlksfalgi ytlairvlag
      601 ipapvyfgva idttclkwgs krcggrgacr lydssalryv ylgltlmlgt vsiffsvavl
      661 wvlrkrssph detlsdtger gacrtksrkd nfvnsdlliq stywpeketr l
//
LOCUS       XP_009566417             707 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier organic anion transporter family member 1C1 isoform
            X4 [Cuculus canorus].
ACCESSION   XP_009566417
VERSION     XP_009566417.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568122.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566417.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..707
                     /product="solute carrier organic anion transporter family
                     member 1C1 isoform X4"
                     /calculated_mol_wt=77702
     Region          43..575
                     /region_name="MFS"
                     /note="Major Facilitator Superfamily; cl28910"
                     /db_xref="CDD:475125"
     Site            order(57..58,61..62,65,97,199..200,202..204,207,227,
                     230..231,234,360,363..364,367..369,372,401,405,446..447,
                     451,455,515,518..519,522..523,526)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:349949"
     CDS             1..707
                     /gene="LOC104065623"
                     /coded_by="XM_009568122.2:181..2304"
                     /db_xref="GeneID:104065623"
ORIGIN      
        1 mtvetessnv ddsnqeaepa qflddeankn lpvkkntscc tglkmflaal sfsylskmla
       61 gtimkssitq ierrfgltss tvgfidgsfe mgnllviafv syfgakfhrp kviaagcftm
      121 algcflsamp hffmgyykye tasqrassan ltssinpcsp hqdvheslle vsrsdcdkep
      181 ssnmwiyill gnmlrgiget piaplgisyl ddfakeedvp vyvaclhtva mlgpmfgfll
      241 gslcarlyvd igfvdlgsit itpqdsrwvg awwlgfiigg vasllsaipf cflpkslkkp
      301 eeanndktsy nllenmgatr kkptpakpkp rkwsetlkdf ytslkkvlgn rmyftflcss
      361 llqfnsfigf ltykpkymeq qygqtasksn fligltslpp vgigiflggv imrkykmgii
      421 aatkfaitms flayvitllh ffvgcennvv agmtvsyegk tipyhenaif sdcnsdckca
      481 snvwdpvcgd ngltyvsacl agcttsvghg kntvfhncsc leassswtgn ssailgqcpk
      541 sedcsrnfiy ytviqvisgf cyalggtpay mimfrcvqpe lkslavglyt limrvlagip
      601 apvyfgalid ktclkwgsts cgqrgacrly dsnayryvyl glsavlrgps ylisilfyil
      661 ikkhyqnknl rpvenggred vpmnkedhck ikerlpgssd aenesci
//
LOCUS       XP_053912230             707 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier organic anion transporter family member 1C1 isoform
            X4 [Cuculus canorus].
ACCESSION   XP_053912230
VERSION     XP_053912230.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056255.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..707
                     /product="solute carrier organic anion transporter family
                     member 1C1 isoform X4"
                     /calculated_mol_wt=77702
     Region          43..575
                     /region_name="MFS"
                     /note="Major Facilitator Superfamily; cl28910"
                     /db_xref="CDD:475125"
     Site            order(57..58,61..62,65,97,199..200,202..204,207,227,
                     230..231,234,360,363..364,367..369,372,401,405,446..447,
                     451,455,515,518..519,522..523,526)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:349949"
     CDS             1..707
                     /gene="LOC104065623"
                     /coded_by="XM_054056255.1:170..2293"
                     /db_xref="GeneID:104065623"
ORIGIN      
        1 mtvetessnv ddsnqeaepa qflddeankn lpvkkntscc tglkmflaal sfsylskmla
       61 gtimkssitq ierrfgltss tvgfidgsfe mgnllviafv syfgakfhrp kviaagcftm
      121 algcflsamp hffmgyykye tasqrassan ltssinpcsp hqdvheslle vsrsdcdkep
      181 ssnmwiyill gnmlrgiget piaplgisyl ddfakeedvp vyvaclhtva mlgpmfgfll
      241 gslcarlyvd igfvdlgsit itpqdsrwvg awwlgfiigg vasllsaipf cflpkslkkp
      301 eeanndktsy nllenmgatr kkptpakpkp rkwsetlkdf ytslkkvlgn rmyftflcss
      361 llqfnsfigf ltykpkymeq qygqtasksn fligltslpp vgigiflggv imrkykmgii
      421 aatkfaitms flayvitllh ffvgcennvv agmtvsyegk tipyhenaif sdcnsdckca
      481 snvwdpvcgd ngltyvsacl agcttsvghg kntvfhncsc leassswtgn ssailgqcpk
      541 sedcsrnfiy ytviqvisgf cyalggtpay mimfrcvqpe lkslavglyt limrvlagip
      601 apvyfgalid ktclkwgsts cgqrgacrly dsnayryvyl glsavlrgps ylisilfyil
      661 ikkhyqnknl rpvenggred vpmnkedhck ikerlpgssd aenesci
//
LOCUS       XP_053912231             707 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier organic anion transporter family member 1C1 isoform
            X4 [Cuculus canorus].
ACCESSION   XP_053912231
VERSION     XP_053912231.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056256.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..707
                     /product="solute carrier organic anion transporter family
                     member 1C1 isoform X4"
                     /calculated_mol_wt=77702
     Region          43..575
                     /region_name="MFS"
                     /note="Major Facilitator Superfamily; cl28910"
                     /db_xref="CDD:475125"
     Site            order(57..58,61..62,65,97,199..200,202..204,207,227,
                     230..231,234,360,363..364,367..369,372,401,405,446..447,
                     451,455,515,518..519,522..523,526)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:349949"
     CDS             1..707
                     /gene="LOC104065623"
                     /coded_by="XM_054056256.1:126..2249"
                     /db_xref="GeneID:104065623"
ORIGIN      
        1 mtvetessnv ddsnqeaepa qflddeankn lpvkkntscc tglkmflaal sfsylskmla
       61 gtimkssitq ierrfgltss tvgfidgsfe mgnllviafv syfgakfhrp kviaagcftm
      121 algcflsamp hffmgyykye tasqrassan ltssinpcsp hqdvheslle vsrsdcdkep
      181 ssnmwiyill gnmlrgiget piaplgisyl ddfakeedvp vyvaclhtva mlgpmfgfll
      241 gslcarlyvd igfvdlgsit itpqdsrwvg awwlgfiigg vasllsaipf cflpkslkkp
      301 eeanndktsy nllenmgatr kkptpakpkp rkwsetlkdf ytslkkvlgn rmyftflcss
      361 llqfnsfigf ltykpkymeq qygqtasksn fligltslpp vgigiflggv imrkykmgii
      421 aatkfaitms flayvitllh ffvgcennvv agmtvsyegk tipyhenaif sdcnsdckca
      481 snvwdpvcgd ngltyvsacl agcttsvghg kntvfhncsc leassswtgn ssailgqcpk
      541 sedcsrnfiy ytviqvisgf cyalggtpay mimfrcvqpe lkslavglyt limrvlagip
      601 apvyfgalid ktclkwgsts cgqrgacrly dsnayryvyl glsavlrgps ylisilfyil
      661 ikkhyqnknl rpvenggred vpmnkedhck ikerlpgssd aenesci
//
LOCUS       XP_053912232             671 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier organic anion transporter family member 1C1 isoform
            X5 [Cuculus canorus].
ACCESSION   XP_053912232
VERSION     XP_053912232.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056257.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..671
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..671
                     /product="solute carrier organic anion transporter family
                     member 1C1 isoform X5"
                     /calculated_mol_wt=73286
     Region          57..538
                     /region_name="MFS"
                     /note="Major Facilitator Superfamily; cl28910"
                     /db_xref="CDD:475125"
     Site            order(71..72,75..76,79,111,215..216,218..220,223,243,
                     246..247,250,333,362,366,407..408,412,416,477,480..481,
                     484..485,488)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:349949"
     CDS             1..671
                     /gene="LOC104065623"
                     /coded_by="XM_054056257.1:57..2072"
                     /db_xref="GeneID:104065623"
ORIGIN      
        1 msllpklchr grdiimeiss kentrffsnt tilpvdrssf ksessaskek qsccggikif
       61 lgalsfvyfa kalsgsylks titqierrfd ipsslvgiid gsfeignlli iifvsyfgak
      121 lhrpriigag climsagtfl iampqffmgr yqyerfsstm nstlsvspcl qdksqtplsv
      181 leksqanint gcekeagssm wiyvllgnll rgigetpiqp lgiayiddya ieenaalyig
      241 cvqtvaiigp ifgfllgslc aklyvdigfv dldsitithk dvqwvgawwl gyliagvisv
      301 lagipfwflp khlrktesrk dsstsseqsk fitedskdqh ksyqqqvkia emakglinip
      361 avafgifsgg limkkfrinv lgaaklslgs sffgyllfls lfamgcensd vagltvsyhg
      421 tkqttdyeqa lfsecnsgcl cskndwdpic gengityvsa clagcqasng sgkntvyfnc
      481 scvgtlesps rsssavvgpc qkgkecpkmf qyflvisvit sytlsvggtp gyilllrcik
      541 phlksfalgi ytlairvlag ipapvyfgva idttclkwgs krcggrgacr lydssalryv
      601 ylgltlmlgt vsiffsvavl wvlrkrssph detlsdtger gacrtksrkd nfvnsdlliq
      661 stywpeketr l
//
LOCUS       XP_053912233             670 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier organic anion transporter family member 1C1 isoform
            X6 [Cuculus canorus].
ACCESSION   XP_053912233
VERSION     XP_053912233.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056258.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..670
                     /product="solute carrier organic anion transporter family
                     member 1C1 isoform X6"
                     /calculated_mol_wt=73010
     Region          57..593
                     /region_name="MFS_SLCO1C_OATP1C"
                     /note="Solute carrier organic anion transporter 1C
                     subfamily of the Major Facilitator Superfamily of
                     transporters; cd17459"
                     /db_xref="CDD:341017"
     Site            order(71..72,75..76,79,111,215..216,218..220,223,243,
                     246..247,250,376,379..380,383..385,388,417,421,462..463,
                     467,471,532,535..536,539..540,543)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:341017"
     CDS             1..670
                     /gene="LOC104065623"
                     /coded_by="XM_054056258.1:58..2070"
                     /db_xref="GeneID:104065623"
ORIGIN      
        1 msllpklchr grdiimeiss kentrffsnt tilpvdrssf ksessaskek qsccggikif
       61 lgalsfvyfa kalsgsylks titqierrfd ipsslvgiid gsfeignlli iifvsyfgak
      121 lhrpriigag climsagtfl iampqffmgr yqyerfsstm nstlsvspcl qdksqtplsv
      181 leksqanint gcekeagssm wiyvllgnll rgigetpiqp lgiayiddya ieenaalyig
      241 cvqtvaiigp ifgfllgslc aklyvdigfv dldsitithk dvqwvgawwl gyliagvisv
      301 lagipfwflp khlrktesrk dsstsseqsk fitedskdqh ksyqqqvkia emakdflpsl
      361 knlfgnpvyi lylcasiiqf nsligmvtyk pkyieqqygq tssktnfvig linipavafg
      421 ifsgglimkk frinvlgaak lslgssffgy llflslfamg censdvaglt vsyhgtkqtt
      481 dyeqalfsec nsgclcsknd wdpicgengi tyvsaclagc qasngsgknt vyfncscvgt
      541 lespsrsssa vvgpcqkgke cpkmfqyflv isvitsytls vggtpgyill lrcikphlks
      601 falgiytlai rvlagipapv yfgvaidttc lkwgskrcgg rgacrlydss alrslskkin
      661 hdsgngiqqc
//
LOCUS       XP_053912234             663 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier organic anion transporter family member 1C1 isoform
            X7 [Cuculus canorus].
ACCESSION   XP_053912234
VERSION     XP_053912234.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056259.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..663
                     /product="solute carrier organic anion transporter family
                     member 1C1 isoform X7"
                     /calculated_mol_wt=72918
     Region          1..531
                     /region_name="MFS"
                     /note="Major Facilitator Superfamily; cl28910"
                     /db_xref="CDD:475125"
     Site            order(13..14,17..18,21,53,155..156,158..160,163,183,
                     186..187,190,316,319..320,323..325,328,357,361,402..403,
                     407,411,471,474..475,478..479,482)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:349949"
     CDS             1..663
                     /gene="LOC104065623"
                     /coded_by="XM_054056259.1:80..2071"
                     /db_xref="GeneID:104065623"
ORIGIN      
        1 mflaalsfsy lskmlagtim kssitqierr fgltsstvgf idgsfemgnl lviafvsyfg
       61 akfhrpkvia agcftmalgc flsamphffm gyykyetasq rassanltss inpcsphqdv
      121 hesllevsrs dcdkepssnm wiyillgnml rgigetpiap lgisylddfa keedvpvyva
      181 clhtvamlgp mfgfllgslc arlyvdigfv dlgsititpq dsrwvgawwl gfiiggvasl
      241 lsaipfcflp kslkkpeean ndktsynlle nmgatrkkpt pakpkprkws etlkdfytsl
      301 kkvlgnrmyf tflcssllqf nsfigfltyk pkymeqqygq tasksnflig ltslppvgig
      361 iflggvimrk ykmgiiaatk faitmsflay vitllhffvg cennvvagmt vsyegktipy
      421 henaifsdcn sdckcasnvw dpvcgdnglt yvsaclagct tsvghgkntv fhncscleas
      481 sswtgnssai lgqcpksedc srnfiyytvi qvisgfcyal ggtpaymimf rcvqpelksl
      541 avglytlimr vlagipapvy fgalidktcl kwgstscgqr gacrlydsna yryvylglsa
      601 vlrgpsylis ilfyilikkh yqnknlrpve nggredvpmn kedhckiker lpgssdaene
      661 sci
//
LOCUS       XP_053912235             662 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier organic anion transporter family member 1C1 isoform
            X8 [Cuculus canorus].
ACCESSION   XP_053912235
VERSION     XP_053912235.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056260.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..662
                     /product="solute carrier organic anion transporter family
                     member 1C1 isoform X8"
                     /calculated_mol_wt=72043
     Region          57..593
                     /region_name="MFS_SLCO1C_OATP1C"
                     /note="Solute carrier organic anion transporter 1C
                     subfamily of the Major Facilitator Superfamily of
                     transporters; cd17459"
                     /db_xref="CDD:341017"
     Site            order(71..72,75..76,79,111,215..216,218..220,223,243,
                     246..247,250,376,379..380,383..385,388,417,421,462..463,
                     467,471,532,535..536,539..540,543)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:341017"
     CDS             1..662
                     /gene="LOC104065623"
                     /coded_by="XM_054056260.1:60..2048"
                     /db_xref="GeneID:104065623"
ORIGIN      
        1 msllpklchr grdiimeiss kentrffsnt tilpvdrssf ksessaskek qsccggikif
       61 lgalsfvyfa kalsgsylks titqierrfd ipsslvgiid gsfeignlli iifvsyfgak
      121 lhrpriigag climsagtfl iampqffmgr yqyerfsstm nstlsvspcl qdksqtplsv
      181 leksqanint gcekeagssm wiyvllgnll rgigetpiqp lgiayiddya ieenaalyig
      241 cvqtvaiigp ifgfllgslc aklyvdigfv dldsitithk dvqwvgawwl gyliagvisv
      301 lagipfwflp khlrktesrk dsstsseqsk fitedskdqh ksyqqqvkia emakdflpsl
      361 knlfgnpvyi lylcasiiqf nsligmvtyk pkyieqqygq tssktnfvig linipavafg
      421 ifsgglimkk frinvlgaak lslgssffgy llflslfamg censdvaglt vsyhgtkqtt
      481 dyeqalfsec nsgclcsknd wdpicgengi tyvsaclagc qasngsgknt vyfncscvgt
      541 lespsrsssa vvgpcqkgke cpkmfqyflv isvitsytls vggtpgyill lrcikphlks
      601 falgiytlai rvlagipapv yfgvaidttc lkwgskrcgg rgacrlydss alrssagcgr
      661 kp
//
LOCUS       XP_053912236             527 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier organic anion transporter family member 1C1 isoform
            X9 [Cuculus canorus].
ACCESSION   XP_053912236
VERSION     XP_053912236.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056261.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..527
                     /product="solute carrier organic anion transporter family
                     member 1C1 isoform X9"
                     /calculated_mol_wt=57709
     Region          <1..394
                     /region_name="MFS"
                     /note="Major Facilitator Superfamily; cl28910"
                     /db_xref="CDD:475125"
     Site            order(16..17,19..21,24,44,47..48,51,177,180..181,184..186,
                     189,218,222,263..264,268,272,333,336..337,340..341,344)
                     /site_type="other"
                     /note="putative chemical substrate binding pocket
                     [chemical binding]"
                     /db_xref="CDD:349949"
     CDS             1..527
                     /gene="LOC104065623"
                     /coded_by="XM_054056261.1:103..1686"
                     /db_xref="GeneID:104065623"
ORIGIN      
        1 mwiyvllgnl lrgigetpiq plgiayiddy aieenaalyi gcvqtvaiig pifgfllgsl
       61 caklyvdigf vdldsitith kdvqwvgaww lgyliagvis vlagipfwfl pkhlrktesr
      121 kdsstsseqs kfitedskdq hksyqqqvki aemakdflps lknlfgnpvy ilylcasiiq
      181 fnsligmvty kpkyieqqyg qtssktnfvi glinipavaf gifsgglimk kfrinvlgaa
      241 klslgssffg yllflslfam gcensdvagl tvsyhgtkqt tdyeqalfse cnsgclcskn
      301 dwdpicgeng ityvsaclag cqasngsgkn tvyfncscvg tlespsrsss avvgpcqkgk
      361 ecpkmfqyfl visvitsytl svggtpgyil llrcikphlk sfalgiytla irvlagipap
      421 vyfgvaidtt clkwgskrcg grgacrlyds salryvylgl tlmlgtvsif fsvavlwvlr
      481 krssphdetl sdtgergacr tksrkdnfvn sdlliqstyw peketrl
//
LOCUS       XP_009564782             474 aa            linear   VRT 09-MAR-2023
DEFINITION  endonuclease domain-containing 1 protein [Cuculus canorus].
ACCESSION   XP_009564782
VERSION     XP_009564782.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566487.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564782.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..474
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..474
                     /product="endonuclease domain-containing 1 protein"
                     /calculated_mol_wt=52222
     Region          63..>224
                     /region_name="Endonuclease_NS"
                     /note="DNA/RNA non-specific endonuclease; smart00892"
                     /db_xref="CDD:214889"
     Site            order(138..139,141,181,185)
                     /site_type="active"
                     /db_xref="CDD:238043"
     Site            order(138..139,185)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:238043"
     CDS             1..474
                     /gene="ENDOD1"
                     /coded_by="XM_009566487.2:336..1760"
                     /db_xref="GeneID:104064182"
ORIGIN      
        1 mktsivfllc isvfpgfsqg rvvgedetgf aecnmffpgq vppegftepf hvkicqqynk
       61 eprfatlyst kdkiplysaf kyskpaqdke enwlvepqid dpenglhemv reddiigtva
      121 nlganqalts dyvgsgyerg llnpsllnee dfqmatytlt navplspsls kswhrdigrv
      181 veqaliphcs kkdhlyllag aipssvrvkg kvsvpetlwl aaccdapegw slglvkkmnd
      241 gnsledltvg elekqllagv hlfrgncged negrekieai lqavsqirsg eqvasdnqea
      301 kdsslvrkva aiiatpfikl lelliyvfve lvkfvfyflw lvvkricgtv ldgvysfcng
      361 vvsylkaism vlisipydag rvvvniflgf lqivqdvfsl tyrillipvg fvlhlaafpy
      421 hsicaipsvl kdmasgiggt fslvidatat llhgfyylag hivkrfvpkv ssdd
//
LOCUS       XP_053912237             263 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction beta-6 protein [Cuculus canorus].
ACCESSION   XP_053912237
VERSION     XP_053912237.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056262.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..263
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..263
                     /product="gap junction beta-6 protein"
                     /calculated_mol_wt=30607
     Region          2..214
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     CDS             1..263
                     /gene="LOC104055324"
                     /coded_by="XM_054056262.1:264..1055"
                     /db_xref="GeneID:104055324"
ORIGIN      
        1 mdwgalhtil ggvnkhstsi gkiwltvlfi frimilvvaa ervwgdeqdd ficntlqpgc
       61 knvcydhffp ishirlwalq lifvstpall vamhvayrrh ekkrqfikgs qkceykdiee
      121 irrqrfhidg slwwtytssi ffrlvfeavf myafyfmydg frmprlmkcs awpcpntvdc
      181 fvsrptektv ftifmiavss icillnvael cyllakfflr rskkagnakh hpnhenkeet
      241 kqnemnelis dscqntvigf tss
//
LOCUS       XP_053912238             263 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction beta-6 protein [Cuculus canorus].
ACCESSION   XP_053912238
VERSION     XP_053912238.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056263.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..263
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..263
                     /product="gap junction beta-6 protein"
                     /calculated_mol_wt=30607
     Region          2..214
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     CDS             1..263
                     /gene="LOC104055324"
                     /coded_by="XM_054056263.1:268..1059"
                     /db_xref="GeneID:104055324"
ORIGIN      
        1 mdwgalhtil ggvnkhstsi gkiwltvlfi frimilvvaa ervwgdeqdd ficntlqpgc
       61 knvcydhffp ishirlwalq lifvstpall vamhvayrrh ekkrqfikgs qkceykdiee
      121 irrqrfhidg slwwtytssi ffrlvfeavf myafyfmydg frmprlmkcs awpcpntvdc
      181 fvsrptektv ftifmiavss icillnvael cyllakfflr rskkagnakh hpnhenkeet
      241 kqnemnelis dscqntvigf tss
//
LOCUS       XP_053912240             263 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction beta-6 protein [Cuculus canorus].
ACCESSION   XP_053912240
VERSION     XP_053912240.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056265.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..263
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..263
                     /product="gap junction beta-6 protein"
                     /calculated_mol_wt=30607
     Region          2..214
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     CDS             1..263
                     /gene="LOC104055324"
                     /coded_by="XM_054056265.1:271..1062"
                     /db_xref="GeneID:104055324"
ORIGIN      
        1 mdwgalhtil ggvnkhstsi gkiwltvlfi frimilvvaa ervwgdeqdd ficntlqpgc
       61 knvcydhffp ishirlwalq lifvstpall vamhvayrrh ekkrqfikgs qkceykdiee
      121 irrqrfhidg slwwtytssi ffrlvfeavf myafyfmydg frmprlmkcs awpcpntvdc
      181 fvsrptektv ftifmiavss icillnvael cyllakfflr rskkagnakh hpnhenkeet
      241 kqnemnelis dscqntvigf tss
//
LOCUS       XP_053912241             263 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction beta-6 protein [Cuculus canorus].
ACCESSION   XP_053912241
VERSION     XP_053912241.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056266.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..263
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..263
                     /product="gap junction beta-6 protein"
                     /calculated_mol_wt=30607
     Region          2..214
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     CDS             1..263
                     /gene="LOC104055324"
                     /coded_by="XM_054056266.1:267..1058"
                     /db_xref="GeneID:104055324"
ORIGIN      
        1 mdwgalhtil ggvnkhstsi gkiwltvlfi frimilvvaa ervwgdeqdd ficntlqpgc
       61 knvcydhffp ishirlwalq lifvstpall vamhvayrrh ekkrqfikgs qkceykdiee
      121 irrqrfhidg slwwtytssi ffrlvfeavf myafyfmydg frmprlmkcs awpcpntvdc
      181 fvsrptektv ftifmiavss icillnvael cyllakfflr rskkagnakh hpnhenkeet
      241 kqnemnelis dscqntvigf tss
//
LOCUS       XP_009554728             263 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction beta-6 protein [Cuculus canorus].
ACCESSION   XP_009554728
VERSION     XP_009554728.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556433.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..263
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..263
                     /product="gap junction beta-6 protein"
                     /calculated_mol_wt=30607
     Region          2..214
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     CDS             1..263
                     /gene="LOC104055324"
                     /coded_by="XM_009556433.2:513..1304"
                     /db_xref="GeneID:104055324"
ORIGIN      
        1 mdwgalhtil ggvnkhstsi gkiwltvlfi frimilvvaa ervwgdeqdd ficntlqpgc
       61 knvcydhffp ishirlwalq lifvstpall vamhvayrrh ekkrqfikgs qkceykdiee
      121 irrqrfhidg slwwtytssi ffrlvfeavf myafyfmydg frmprlmkcs awpcpntvdc
      181 fvsrptektv ftifmiavss icillnvael cyllakfflr rskkagnakh hpnhenkeet
      241 kqnemnelis dscqntvigf tss
//
LOCUS       XP_053912242             263 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction beta-6 protein [Cuculus canorus].
ACCESSION   XP_053912242
VERSION     XP_053912242.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056267.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..263
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..263
                     /product="gap junction beta-6 protein"
                     /calculated_mol_wt=30607
     Region          2..214
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     CDS             1..263
                     /gene="LOC104055324"
                     /coded_by="XM_054056267.1:173..964"
                     /db_xref="GeneID:104055324"
ORIGIN      
        1 mdwgalhtil ggvnkhstsi gkiwltvlfi frimilvvaa ervwgdeqdd ficntlqpgc
       61 knvcydhffp ishirlwalq lifvstpall vamhvayrrh ekkrqfikgs qkceykdiee
      121 irrqrfhidg slwwtytssi ffrlvfeavf myafyfmydg frmprlmkcs awpcpntvdc
      181 fvsrptektv ftifmiavss icillnvael cyllakfflr rskkagnakh hpnhenkeet
      241 kqnemnelis dscqntvigf tss
//
LOCUS       XP_053912243             263 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction beta-6 protein [Cuculus canorus].
ACCESSION   XP_053912243
VERSION     XP_053912243.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056268.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..263
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..263
                     /product="gap junction beta-6 protein"
                     /calculated_mol_wt=30607
     Region          2..214
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     CDS             1..263
                     /gene="LOC104055324"
                     /coded_by="XM_054056268.1:357..1148"
                     /db_xref="GeneID:104055324"
ORIGIN      
        1 mdwgalhtil ggvnkhstsi gkiwltvlfi frimilvvaa ervwgdeqdd ficntlqpgc
       61 knvcydhffp ishirlwalq lifvstpall vamhvayrrh ekkrqfikgs qkceykdiee
      121 irrqrfhidg slwwtytssi ffrlvfeavf myafyfmydg frmprlmkcs awpcpntvdc
      181 fvsrptektv ftifmiavss icillnvael cyllakfflr rskkagnakh hpnhenkeet
      241 kqnemnelis dscqntvigf tss
//
LOCUS       XP_053912244             263 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction beta-6 protein [Cuculus canorus].
ACCESSION   XP_053912244
VERSION     XP_053912244.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056269.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..263
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..263
                     /product="gap junction beta-6 protein"
                     /calculated_mol_wt=30607
     Region          2..214
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     CDS             1..263
                     /gene="LOC104055324"
                     /coded_by="XM_054056269.1:1959..2750"
                     /db_xref="GeneID:104055324"
ORIGIN      
        1 mdwgalhtil ggvnkhstsi gkiwltvlfi frimilvvaa ervwgdeqdd ficntlqpgc
       61 knvcydhffp ishirlwalq lifvstpall vamhvayrrh ekkrqfikgs qkceykdiee
      121 irrqrfhidg slwwtytssi ffrlvfeavf myafyfmydg frmprlmkcs awpcpntvdc
      181 fvsrptektv ftifmiavss icillnvael cyllakfflr rskkagnakh hpnhenkeet
      241 kqnemnelis dscqntvigf tss
//
LOCUS       XP_053912245             263 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction beta-6 protein [Cuculus canorus].
ACCESSION   XP_053912245
VERSION     XP_053912245.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056270.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..263
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..263
                     /product="gap junction beta-6 protein"
                     /calculated_mol_wt=30607
     Region          2..214
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     CDS             1..263
                     /gene="LOC104055324"
                     /coded_by="XM_054056270.1:1772..2563"
                     /db_xref="GeneID:104055324"
ORIGIN      
        1 mdwgalhtil ggvnkhstsi gkiwltvlfi frimilvvaa ervwgdeqdd ficntlqpgc
       61 knvcydhffp ishirlwalq lifvstpall vamhvayrrh ekkrqfikgs qkceykdiee
      121 irrqrfhidg slwwtytssi ffrlvfeavf myafyfmydg frmprlmkcs awpcpntvdc
      181 fvsrptektv ftifmiavss icillnvael cyllakfflr rskkagnakh hpnhenkeet
      241 kqnemnelis dscqntvigf tss
//
LOCUS       XP_053912246             263 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction beta-6 protein [Cuculus canorus].
ACCESSION   XP_053912246
VERSION     XP_053912246.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056271.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..263
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..263
                     /product="gap junction beta-6 protein"
                     /calculated_mol_wt=30607
     Region          2..214
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     CDS             1..263
                     /gene="LOC104055324"
                     /coded_by="XM_054056271.1:351..1142"
                     /db_xref="GeneID:104055324"
ORIGIN      
        1 mdwgalhtil ggvnkhstsi gkiwltvlfi frimilvvaa ervwgdeqdd ficntlqpgc
       61 knvcydhffp ishirlwalq lifvstpall vamhvayrrh ekkrqfikgs qkceykdiee
      121 irrqrfhidg slwwtytssi ffrlvfeavf myafyfmydg frmprlmkcs awpcpntvdc
      181 fvsrptektv ftifmiavss icillnvael cyllakfflr rskkagnakh hpnhenkeet
      241 kqnemnelis dscqntvigf tss
//
LOCUS       XP_053912247             389 aa            linear   VRT 09-MAR-2023
DEFINITION  platelet-derived growth factor D isoform X1 [Cuculus canorus].
ACCESSION   XP_053912247
VERSION     XP_053912247.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056272.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..389
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..389
                     /product="platelet-derived growth factor D isoform X1"
                     /calculated_mol_wt=44234
     Region          57..170
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cd00041"
                     /db_xref="CDD:238001"
     Site            order(63,65,67,94,100,141,166,168,170)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     Region          286..384
                     /region_name="PDGF"
                     /note="Platelet-derived and vascular endothelial growth
                     factors (PDGF, VEGF) family domain; PDGF is a potent
                     activator for cells of mesenchymal origin; PDGF-A and
                     PDGF-B form AA and BB homodimers and an AB heterodimer;
                     VEGF is a potent mitogen in embryonic and...; cd00135"
                     /db_xref="CDD:238079"
     Site            order(286..289,322,329..332,347..350)
                     /site_type="active"
                     /note="receptor binding interface [active]"
                     /db_xref="CDD:238079"
     Site            order(288,318,322,334,379,381)
                     /site_type="other"
                     /note="cysteine knot motif"
                     /db_xref="CDD:238079"
     Site            order(312,321)
                     /site_type="other"
                     /note="dimerization interface [polypeptide binding]"
                     /db_xref="CDD:238079"
     CDS             1..389
                     /gene="PDGFD"
                     /coded_by="XM_054056272.1:433..1602"
                     /db_xref="GeneID:104059429"
ORIGIN      
        1 mqllilllly avvcanfcsr qgttapaqgg siralrssni rrdesnhltd lyrkeetisv
       61 agngcihspr fpssyprnll ltwrlhspen triqlafdnq fgleependi crydfveved
      121 isetstvirg rwcghkevpp ritsrrnqik itfksddyfv akpgfkicys lvcsskeadf
      181 antqemddfq haasetnwes vtssvsgvsy pspsvtdptl taealdqtia afdtvedllk
      241 hfnpdswqed lenlytdsgh hyrgrsyhdr kskvdldrln ddvkrysctp rnysvnlree
      301 lkltnvvffp rcllvqrcgg ncgcgtsnwk sctcmsgktv kkyhevlkfi peaghprrkg
      361 rtrnnmalvd iqldhhercd cicssrppr
//
LOCUS       XP_053912248             383 aa            linear   VRT 09-MAR-2023
DEFINITION  platelet-derived growth factor D isoform X2 [Cuculus canorus].
ACCESSION   XP_053912248
VERSION     XP_053912248.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056273.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..383
                     /product="platelet-derived growth factor D isoform X2"
                     /calculated_mol_wt=43552
     Region          51..164
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cd00041"
                     /db_xref="CDD:238001"
     Site            order(57,59,61,88,94,135,160,162,164)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     Region          280..378
                     /region_name="PDGF"
                     /note="Platelet-derived and vascular endothelial growth
                     factors (PDGF, VEGF) family domain; PDGF is a potent
                     activator for cells of mesenchymal origin; PDGF-A and
                     PDGF-B form AA and BB homodimers and an AB heterodimer;
                     VEGF is a potent mitogen in embryonic and...; cd00135"
                     /db_xref="CDD:238079"
     Site            order(280..283,316,323..326,341..344)
                     /site_type="active"
                     /note="receptor binding interface [active]"
                     /db_xref="CDD:238079"
     Site            order(282,312,316,328,373,375)
                     /site_type="other"
                     /note="cysteine knot motif"
                     /db_xref="CDD:238079"
     Site            order(306,315)
                     /site_type="other"
                     /note="dimerization interface [polypeptide binding]"
                     /db_xref="CDD:238079"
     CDS             1..383
                     /gene="PDGFD"
                     /coded_by="XM_054056273.1:436..1587"
                     /db_xref="GeneID:104059429"
ORIGIN      
        1 mqllilllly avvcanfcsr qgttapaqgg siralrssni rrddlyrkee tisvagngci
       61 hsprfpssyp rnllltwrlh spentriqla fdnqfgleep endicrydfv evedisetst
      121 virgrwcghk evppritsrr nqikitfksd dyfvakpgfk icyslvcssk eadfantqem
      181 ddfqhaaset nwesvtssvs gvsypspsvt dptltaeald qtiaafdtve dllkhfnpds
      241 wqedlenlyt dsghhyrgrs yhdrkskvdl drlnddvkry sctprnysvn lreelkltnv
      301 vffprcllvq rcggncgcgt snwksctcms gktvkkyhev lkfipeaghp rrkgrtrnnm
      361 alvdiqldhh ercdcicssr ppr
//
LOCUS       XP_009559400             375 aa            linear   VRT 09-MAR-2023
DEFINITION  platelet-derived growth factor D isoform X3 [Cuculus canorus].
ACCESSION   XP_009559400
VERSION     XP_009559400.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009561105.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..375
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..375
                     /product="platelet-derived growth factor D isoform X3"
                     /calculated_mol_wt=42691
     Region          57..170
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cd00041"
                     /db_xref="CDD:238001"
     Site            order(63,65,67,94,100,141,166,168,170)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     Region          272..370
                     /region_name="PDGF"
                     /note="Platelet-derived and vascular endothelial growth
                     factors (PDGF, VEGF) family domain; PDGF is a potent
                     activator for cells of mesenchymal origin; PDGF-A and
                     PDGF-B form AA and BB homodimers and an AB heterodimer;
                     VEGF is a potent mitogen in embryonic and...; cd00135"
                     /db_xref="CDD:238079"
     Site            order(272..275,308,315..318,333..336)
                     /site_type="active"
                     /note="receptor binding interface [active]"
                     /db_xref="CDD:238079"
     Site            order(274,304,308,320,365,367)
                     /site_type="other"
                     /note="cysteine knot motif"
                     /db_xref="CDD:238079"
     Site            order(298,307)
                     /site_type="other"
                     /note="dimerization interface [polypeptide binding]"
                     /db_xref="CDD:238079"
     CDS             1..375
                     /gene="PDGFD"
                     /coded_by="XM_009561105.2:430..1557"
                     /db_xref="GeneID:104059429"
ORIGIN      
        1 mqllilllly avvcanfcsr qgttapaqgg siralrssni rrdesnhltd lyrkeetisv
       61 agngcihspr fpssyprnll ltwrlhspen triqlafdnq fgleependi crydfveved
      121 isetstvirg rwcghkevpp ritsrrnqik itfksddyfv akpgfkicys lvddfqhaas
      181 etnwesvtss vsgvsypsps vtdptltaea ldqtiaafdt vedllkhfnp dswqedlenl
      241 ytdsghhyrg rsyhdrkskv dldrlnddvk rysctprnys vnlreelklt nvvffprcll
      301 vqrcggncgc gtsnwksctc msgktvkkyh evlkfipeag hprrkgrtrn nmalvdiqld
      361 hhercdcics srppr
//
LOCUS       XP_053912249             369 aa            linear   VRT 09-MAR-2023
DEFINITION  platelet-derived growth factor D isoform X4 [Cuculus canorus].
ACCESSION   XP_053912249
VERSION     XP_053912249.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056274.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..369
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..369
                     /product="platelet-derived growth factor D isoform X4"
                     /calculated_mol_wt=42010
     Region          51..164
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cd00041"
                     /db_xref="CDD:238001"
     Site            order(57,59,61,88,94,135,160,162,164)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     Region          266..364
                     /region_name="PDGF"
                     /note="Platelet-derived and vascular endothelial growth
                     factors (PDGF, VEGF) family domain; PDGF is a potent
                     activator for cells of mesenchymal origin; PDGF-A and
                     PDGF-B form AA and BB homodimers and an AB heterodimer;
                     VEGF is a potent mitogen in embryonic and...; cd00135"
                     /db_xref="CDD:238079"
     Site            order(266..269,302,309..312,327..330)
                     /site_type="active"
                     /note="receptor binding interface [active]"
                     /db_xref="CDD:238079"
     Site            order(268,298,302,314,359,361)
                     /site_type="other"
                     /note="cysteine knot motif"
                     /db_xref="CDD:238079"
     Site            order(292,301)
                     /site_type="other"
                     /note="dimerization interface [polypeptide binding]"
                     /db_xref="CDD:238079"
     CDS             1..369
                     /gene="PDGFD"
                     /coded_by="XM_054056274.1:433..1542"
                     /db_xref="GeneID:104059429"
ORIGIN      
        1 mqllilllly avvcanfcsr qgttapaqgg siralrssni rrddlyrkee tisvagngci
       61 hsprfpssyp rnllltwrlh spentriqla fdnqfgleep endicrydfv evedisetst
      121 virgrwcghk evppritsrr nqikitfksd dyfvakpgfk icyslvddfq haasetnwes
      181 vtssvsgvsy pspsvtdptl taealdqtia afdtvedllk hfnpdswqed lenlytdsgh
      241 hyrgrsyhdr kskvdldrln ddvkrysctp rnysvnlree lkltnvvffp rcllvqrcgg
      301 ncgcgtsnwk sctcmsgktv kkyhevlkfi peaghprrkg rtrnnmalvd iqldhhercd
      361 cicssrppr
//
LOCUS       XP_053912250             369 aa            linear   VRT 09-MAR-2023
DEFINITION  platelet-derived growth factor D isoform X5 [Cuculus canorus].
ACCESSION   XP_053912250
VERSION     XP_053912250.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056275.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..369
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..369
                     /product="platelet-derived growth factor D isoform X5"
                     /calculated_mol_wt=42055
     Region          57..170
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cd00041"
                     /db_xref="CDD:238001"
     Site            order(63,65,67,94,100,141,166,168,170)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     Region          266..364
                     /region_name="PDGF"
                     /note="Platelet-derived and vascular endothelial growth
                     factors (PDGF, VEGF) family domain; PDGF is a potent
                     activator for cells of mesenchymal origin; PDGF-A and
                     PDGF-B form AA and BB homodimers and an AB heterodimer;
                     VEGF is a potent mitogen in embryonic and...; cd00135"
                     /db_xref="CDD:238079"
     Site            order(266..269,302,309..312,327..330)
                     /site_type="active"
                     /note="receptor binding interface [active]"
                     /db_xref="CDD:238079"
     Site            order(268,298,302,314,359,361)
                     /site_type="other"
                     /note="cysteine knot motif"
                     /db_xref="CDD:238079"
     Site            order(292,301)
                     /site_type="other"
                     /note="dimerization interface [polypeptide binding]"
                     /db_xref="CDD:238079"
     CDS             1..369
                     /gene="PDGFD"
                     /coded_by="XM_054056275.1:432..1541"
                     /db_xref="GeneID:104059429"
ORIGIN      
        1 mqllilllly avvcanfcsr qgttapaqgg siralrssni rrdesnhltd lyrkeetisv
       61 agngcihspr fpssyprnll ltwrlhspen triqlafdnq fgleependi crydfveved
      121 isetstvirg rwcghkevpp ritsrrnqik itfksddyfv akpgfkicys lvcsskeadf
      181 antqemgvsy pspsvtdptl taealdqtia afdtvedllk hfnpdswqed lenlytdsgh
      241 hyrgrsyhdr kskvdldrln ddvkrysctp rnysvnlree lkltnvvffp rcllvqrcgg
      301 ncgcgtsnwk sctcmsgktv kkyhevlkfi peaghprrkg rtrnnmalvd iqldhhercd
      361 cicssrppr
//
LOCUS       XP_053912251             355 aa            linear   VRT 09-MAR-2023
DEFINITION  platelet-derived growth factor D isoform X6 [Cuculus canorus].
ACCESSION   XP_053912251
VERSION     XP_053912251.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056276.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..355
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..355
                     /product="platelet-derived growth factor D isoform X6"
                     /calculated_mol_wt=40512
     Region          57..170
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cd00041"
                     /db_xref="CDD:238001"
     Site            order(63,65,67,94,100,141,166,168,170)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     Region          252..350
                     /region_name="PDGF"
                     /note="Platelet-derived and vascular endothelial growth
                     factors (PDGF, VEGF) family domain; PDGF is a potent
                     activator for cells of mesenchymal origin; PDGF-A and
                     PDGF-B form AA and BB homodimers and an AB heterodimer;
                     VEGF is a potent mitogen in embryonic and...; cd00135"
                     /db_xref="CDD:238079"
     Site            order(252..255,288,295..298,313..316)
                     /site_type="active"
                     /note="receptor binding interface [active]"
                     /db_xref="CDD:238079"
     Site            order(254,284,288,300,345,347)
                     /site_type="other"
                     /note="cysteine knot motif"
                     /db_xref="CDD:238079"
     Site            order(278,287)
                     /site_type="other"
                     /note="dimerization interface [polypeptide binding]"
                     /db_xref="CDD:238079"
     CDS             1..355
                     /gene="PDGFD"
                     /coded_by="XM_054056276.1:430..1497"
                     /db_xref="GeneID:104059429"
ORIGIN      
        1 mqllilllly avvcanfcsr qgttapaqgg siralrssni rrdesnhltd lyrkeetisv
       61 agngcihspr fpssyprnll ltwrlhspen triqlafdnq fgleependi crydfveved
      121 isetstvirg rwcghkevpp ritsrrnqik itfksddyfv akpgfkicys lvgvsypsps
      181 vtdptltaea ldqtiaafdt vedllkhfnp dswqedlenl ytdsghhyrg rsyhdrkskv
      241 dldrlnddvk rysctprnys vnlreelklt nvvffprcll vqrcggncgc gtsnwksctc
      301 msgktvkkyh evlkfipeag hprrkgrtrn nmalvdiqld hhercdcics srppr
//
LOCUS       XP_053912252             480 aa            linear   VRT 09-MAR-2023
DEFINITION  phenylalanine-4-hydroxylase isoform X1 [Cuculus canorus].
ACCESSION   XP_053912252
VERSION     XP_053912252.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056277.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..480
                     /product="phenylalanine-4-hydroxylase isoform X1"
                     /calculated_mol_wt=54619
     Region          48..480
                     /region_name="arom_aa_hydroxylase"
                     /note="Biopterin-dependent aromatic amino acid
                     hydroxylase; a family of non-heme, iron(II)-dependent
                     enzymes that includes prokaryotic and eukaryotic
                     phenylalanine-4-hydroxylase (PheOH), eukaryotic tyrosine
                     hydroxylase (TyrOH) and eukaryotic tryptophan...; cl01244"
                     /db_xref="CDD:470129"
     Site            order(166,298,305..308,313,354,374,377..378)
                     /site_type="other"
                     /note="substrate binding pocket [chemical binding]"
                     /db_xref="CDD:239463"
     Site            order(275,277,282,350,353)
                     /site_type="active"
                     /note="cofactor binding site [active]"
                     /db_xref="CDD:239463"
     Site            order(313,318,358)
                     /site_type="metal-binding"
                     /note="metal binding site [ion binding]"
                     /db_xref="CDD:239463"
     CDS             1..480
                     /gene="PAH"
                     /coded_by="XM_054056277.1:16..1458"
                     /db_xref="GeneID:104058923"
ORIGIN      
        1 mgkppeaela hsagngagrs fervflrgyc clcnmdaqhs kmngdpfqes myieessnkn
       61 gvislifslk eevgalakvl rmfeekginl thiesrpsrl nkdeyeffin legknvpvld
      121 ktikslrndi gatvhelsrt kkkdtvpwfp rsiqeldrfa nqilsygael dadhpgfkdp
      181 vyrarrkefa diaynyrhgq piprvtytee ekktwgtvfr elkslyptha cyehnhvfpl
      241 lekycgyred nipqledisk flqtctgfrl rpvagllssr dflaglafrv fhstqyirha
      301 skpmytpepd ichellghvp lfadpsfaqf sqeiglaslg apddfiekla tvywftvefg
      361 lckegdslka ygagllssfg elqyclsgkp eiqplvlekt avqkypvtef qpiyyvaesf
      421 kdakeklrkf aqtiprpfsv rynpytqrie vldnakqlkn ladtinseig ilcnalqkik
//
LOCUS       XP_009558803             446 aa            linear   VRT 09-MAR-2023
DEFINITION  phenylalanine-4-hydroxylase isoform X2 [Cuculus canorus].
ACCESSION   XP_009558803
VERSION     XP_009558803.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560508.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..446
                     /product="phenylalanine-4-hydroxylase isoform X2"
                     /calculated_mol_wt=50994
     Region          14..446
                     /region_name="arom_aa_hydroxylase"
                     /note="Biopterin-dependent aromatic amino acid
                     hydroxylase; a family of non-heme, iron(II)-dependent
                     enzymes that includes prokaryotic and eukaryotic
                     phenylalanine-4-hydroxylase (PheOH), eukaryotic tyrosine
                     hydroxylase (TyrOH) and eukaryotic tryptophan...; cl01244"
                     /db_xref="CDD:470129"
     Site            order(132,264,271..274,279,320,340,343..344)
                     /site_type="other"
                     /note="substrate binding pocket [chemical binding]"
                     /db_xref="CDD:239463"
     Site            order(241,243,248,316,319)
                     /site_type="active"
                     /note="cofactor binding site [active]"
                     /db_xref="CDD:239463"
     Site            order(279,284,324)
                     /site_type="metal-binding"
                     /note="metal binding site [ion binding]"
                     /db_xref="CDD:239463"
     CDS             1..446
                     /gene="PAH"
                     /coded_by="XM_009560508.2:63..1403"
                     /db_xref="GeneID:104058923"
ORIGIN      
        1 mdaqhskmng dpfqesmyie essnkngvis lifslkeevg alakvlrmfe ekginlthie
       61 srpsrlnkde yeffinlegk nvpvldktik slrndigatv helsrtkkkd tvpwfprsiq
      121 eldrfanqil sygaeldadh pgfkdpvyra rrkefadiay nyrhgqpipr vtyteeekkt
      181 wgtvfrelks lypthacyeh nhvfplleky cgyrednipq lediskflqt ctgfrlrpva
      241 gllssrdfla glafrvfhst qyirhaskpm ytpepdiche llghvplfad psfaqfsqei
      301 glaslgapdd fieklatvyw ftvefglcke gdslkaygag llssfgelqy clsgkpeiqp
      361 lvlektavqk ypvtefqpiy yvaesfkdak eklrkfaqti prpfsvrynp ytqrievldn
      421 akqlknladt inseigilcn alqkik
//
LOCUS       XP_053912253             716 aa            linear   VRT 09-MAR-2023
DEFINITION  lethal(3)malignant brain tumor-like protein 2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912253
VERSION     XP_053912253.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056278.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..716
                     /product="lethal(3)malignant brain tumor-like protein 2
                     isoform X1"
                     /calculated_mol_wt=80050
     Region          216..317
                     /region_name="MBT_L3MBTL2_rpt1"
                     /note="first malignant brain tumor (MBT) repeat found in
                     Lethal(3)malignant brain tumor-like protein 2 (L3MBTL2)
                     and similar proteins; cd20121"
                     /db_xref="CDD:439111"
     Site            order(217..218,278..280,283,286..290,300..301,303,
                     306..307,310..317)
                     /site_type="other"
                     /note="Pho/YY1 spacer binding site [polypeptide binding]"
                     /db_xref="CDD:439111"
     Site            order(229,232,238,240,256,259,265)
                     /site_type="other"
                     /note="putative methyllysine peptide binding site
                     [polypeptide binding]"
                     /db_xref="CDD:439111"
     Region          319..402
                     /region_name="MBT_L3MBTL2_rpt2"
                     /note="second malignant brain tumor (MBT) repeat found in
                     Lethal(3)malignant brain tumor-like protein 2 (L3MBTL2);
                     cd20124"
                     /db_xref="CDD:439114"
     Region          438..528
                     /region_name="MBT_L3MBTL2_rpt3"
                     /note="third malignant brain tumor (MBT) repeat found in
                     Lethal(3)malignant brain tumor-like protein 2 (L3MBTL2);
                     cd20127"
                     /db_xref="CDD:439117"
     Region          544..612
                     /region_name="MBT_dSfmbt-like_rpt4"
                     /note="fourth malignant brain tumor (MBT) repeat found in
                     the Drosophila melanogaster Polycomb protein Sfmbt
                     (dSfmbt)-like family; cd20100"
                     /db_xref="CDD:439090"
     Site            order(556,559,562,564,580,583,587)
                     /site_type="other"
                     /note="methyllysine peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:439090"
     CDS             1..716
                     /gene="L3MBTL2"
                     /coded_by="XM_054056278.1:64..2214"
                     /db_xref="GeneID:104055500"
ORIGIN      
        1 meqdrgelvs tfchknssle rgeeegddde edddldifeg ydsfrgynss mgsdssscld
       61 essddevadr eagelatspm hqpstgrlte dsgsepavce mcgivgtrea ffsktkrfcs
      121 vscsrsyssn skkasilarl qgkpptkkak vlhkaawsak igaflhsqgt gqladgtltg
      181 qdalvlgfdw gkylqehgfk aapvscfkhv plfdqwddvv kgmkvevlns davlpsrvyw
      241 iasviqtvgy rallryegfe ndaghdfwcn lgtvdihpig wcainskilv ppqtihakyt
      301 dwrsylmkkl vgartipvdf hikmaesmky pfrqgmrvev vdknhvsqtr mavvdtvigg
      361 rlrllyedgd sdddfwchmw splihpvgws rrvghnikkt eekrsdmanh ptfrkiycda
      421 vpylfkkvra vyaeggwfee gmkleaidpl nlgnicvatv ckvlldgylm isidgatsdd
      481 gsdwfcyhas shaifpvnfc rknnidltpp kgqdaktfnw esylektksr pvparlfntd
      541 cpnhgfkagm kveavdlmep rlicvatvtr vvqrllsihf dgwdneydqw vdcespdiyp
      601 vgwceltgyq lqppvvpept tpvkakevpk kkkkpygkkr kklpaktrnv kqtvkktsap
      661 ktkreakaas kalpepapde iiavqvkeet idpsvpdfea telpvpvssi kqevtd
//
LOCUS       XP_053912254             694 aa            linear   VRT 09-MAR-2023
DEFINITION  lethal(3)malignant brain tumor-like protein 2 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912254
VERSION     XP_053912254.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056279.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..694
                     /product="lethal(3)malignant brain tumor-like protein 2
                     isoform X2"
                     /calculated_mol_wt=77459
     Region          216..317
                     /region_name="MBT_L3MBTL2_rpt1"
                     /note="first malignant brain tumor (MBT) repeat found in
                     Lethal(3)malignant brain tumor-like protein 2 (L3MBTL2)
                     and similar proteins; cd20121"
                     /db_xref="CDD:439111"
     Site            order(217..218,278..280,283,286..290,300..301,303,
                     306..307,310..317)
                     /site_type="other"
                     /note="Pho/YY1 spacer binding site [polypeptide binding]"
                     /db_xref="CDD:439111"
     Site            order(229,232,238,240,256,259,265)
                     /site_type="other"
                     /note="putative methyllysine peptide binding site
                     [polypeptide binding]"
                     /db_xref="CDD:439111"
     Region          319..402
                     /region_name="MBT_L3MBTL2_rpt2"
                     /note="second malignant brain tumor (MBT) repeat found in
                     Lethal(3)malignant brain tumor-like protein 2 (L3MBTL2);
                     cd20124"
                     /db_xref="CDD:439114"
     Region          438..528
                     /region_name="MBT_L3MBTL2_rpt3"
                     /note="third malignant brain tumor (MBT) repeat found in
                     Lethal(3)malignant brain tumor-like protein 2 (L3MBTL2);
                     cd20127"
                     /db_xref="CDD:439117"
     Region          544..614
                     /region_name="MBT_dSfmbt-like_rpt4"
                     /note="fourth malignant brain tumor (MBT) repeat found in
                     the Drosophila melanogaster Polycomb protein Sfmbt
                     (dSfmbt)-like family; cd20100"
                     /db_xref="CDD:439090"
     Site            order(556,559,562,564,580,583,587)
                     /site_type="other"
                     /note="methyllysine peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:439090"
     CDS             1..694
                     /gene="L3MBTL2"
                     /coded_by="XM_054056279.1:64..2148"
                     /db_xref="GeneID:104055500"
ORIGIN      
        1 meqdrgelvs tfchknssle rgeeegddde edddldifeg ydsfrgynss mgsdssscld
       61 essddevadr eagelatspm hqpstgrlte dsgsepavce mcgivgtrea ffsktkrfcs
      121 vscsrsyssn skkasilarl qgkpptkkak vlhkaawsak igaflhsqgt gqladgtltg
      181 qdalvlgfdw gkylqehgfk aapvscfkhv plfdqwddvv kgmkvevlns davlpsrvyw
      241 iasviqtvgy rallryegfe ndaghdfwcn lgtvdihpig wcainskilv ppqtihakyt
      301 dwrsylmkkl vgartipvdf hikmaesmky pfrqgmrvev vdknhvsqtr mavvdtvigg
      361 rlrllyedgd sdddfwchmw splihpvgws rrvghnikkt eekrsdmanh ptfrkiycda
      421 vpylfkkvra vyaeggwfee gmkleaidpl nlgnicvatv ckvlldgylm isidgatsdd
      481 gsdwfcyhas shaifpvnfc rknnidltpp kgqdaktfnw esylektksr pvparlfntd
      541 cpnhgfkagm kveavdlmep rlicvatvtr vvqrllsihf dgwdneydqw vdcespdiyp
      601 vgwceltgyq lqppvvpgkk lpaktrnvkq tvkktsapkt kreakaaska lpepapdeii
      661 avqvkeetid psvpdfeate lpvpvssikq evtd
//
LOCUS       XP_053912255            1250 aa            linear   VRT 09-MAR-2023
DEFINITION  receptor-type tyrosine-protein phosphatase O isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912255
VERSION     XP_053912255.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056280.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1250
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1250
                     /product="receptor-type tyrosine-protein phosphatase O
                     isoform X1"
                     /calculated_mol_wt=141351
     Region          468..555
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          549..>828
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(551..552,554..555)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Site            order(757,819,834)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          759..839
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(835..836,838..839)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          985..1229
                     /region_name="R-PTPc-O"
                     /note="catalytic domain of receptor-type tyrosine-protein
                     phosphatase O; cd14614"
                     /db_xref="CDD:350462"
     CDS             1..1250
                     /gene="PTPRO"
                     /coded_by="XM_054056280.1:181..3933"
                     /db_xref="GeneID:104067841"
ORIGIN      
        1 mlpqfaiaeh gsepsggake hqpplpgqpp sppmperrrr ggpgarscll wlfvllknae
       61 pfqvtvredn siivsleasd vvssssvyvv kiagesknyf fqfeefnstl ptpvvfnary
      121 hglyyivtll vvnsnmvsks arsitvltkp lpvssvsiyd ykpspetgvl feiqypekyn
      181 vftrvnisyw egkdyrtmly kdffkgktvf nhwlpgicys nitfqlvsea tfnkstlvey
      241 sgiqhepkqh rtvpypprni svqiipinrn nweehsgnfa eesfmgpqei irkeklshfs
      301 nnapeipaan tstdwpdyry nrteyettsq pywwsneaes segeeefvna vpsdyeandv
      361 ntsgkltpep psflpvqmvl twlppkppta fdgfninier eenstefltv sedthkfvae
      421 lkepgkykls vttfsssgsc evrgsqsakt lnfyisptge wieeltekpq hvtvtvlsst
      481 taltswtasq dsggnstivs vvsltcqkqk esqrlekhyc tqvnssssli enlvpgaqyq
      541 vvvylrkgpl vgppsdpvtf sivptgikdl tlyplgptav vlswnrpflg vfrkyvvemf
      601 yfnpstmtse wttyyeiaat vsltasvkia nllpawyynf rvtmvtwgdp elsccdssti
      661 sfitapvape itsieyynhl lyvtwtyggd gtdlshsrml hwmviaegkk kikksvtrnv
      721 mtavlslppg diynlsvtac tergsntslp qlvklepapp kslfavnktq tsvtllwvee
      781 gvadffevyc qqagsgqetk vqepvtvssh vvtissltpa tsyncsvttf shnspsvptf
      841 iavstmvtem npnvvvisvl ailsilligl llvtlvvlrr khlqmarecg agtfvnfasl
      901 erdgklpynw rrsvfafltl lpsclwtdyl lafyinpwsk nglkkrkltn pvqlddfdgy
      961 ikdmakdsdy kfslqfeelk ligldiphfa adlpmnrckn rytnilpydf srvrlvsmne
     1021 eegsdyinan yipgynslqe yiatqgplpe trndfwkmvl qqksqiivml tqcnekrrvk
     1081 cdhywpfted pvaygditve mlseeehtdw vyrnfrisya devqdvmhfn ytawpdhgvp
     1141 ttnaaesilq fvqmvrqksa kskgpmiihc sagvgrtgtf ialdrllqhi rdhefvdilg
     1201 lvsdmrsyrm smvqteeqyi fihqcvqlmw qkkkqqfcis dviyenvsks
//
LOCUS       XP_053912256            1250 aa            linear   VRT 09-MAR-2023
DEFINITION  receptor-type tyrosine-protein phosphatase O isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912256
VERSION     XP_053912256.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056281.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1250
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1250
                     /product="receptor-type tyrosine-protein phosphatase O
                     isoform X1"
                     /calculated_mol_wt=141351
     Region          468..555
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          549..>828
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(551..552,554..555)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Site            order(757,819,834)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          759..839
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(835..836,838..839)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          985..1229
                     /region_name="R-PTPc-O"
                     /note="catalytic domain of receptor-type tyrosine-protein
                     phosphatase O; cd14614"
                     /db_xref="CDD:350462"
     CDS             1..1250
                     /gene="PTPRO"
                     /coded_by="XM_054056281.1:181..3933"
                     /db_xref="GeneID:104067841"
ORIGIN      
        1 mlpqfaiaeh gsepsggake hqpplpgqpp sppmperrrr ggpgarscll wlfvllknae
       61 pfqvtvredn siivsleasd vvssssvyvv kiagesknyf fqfeefnstl ptpvvfnary
      121 hglyyivtll vvnsnmvsks arsitvltkp lpvssvsiyd ykpspetgvl feiqypekyn
      181 vftrvnisyw egkdyrtmly kdffkgktvf nhwlpgicys nitfqlvsea tfnkstlvey
      241 sgiqhepkqh rtvpypprni svqiipinrn nweehsgnfa eesfmgpqei irkeklshfs
      301 nnapeipaan tstdwpdyry nrteyettsq pywwsneaes segeeefvna vpsdyeandv
      361 ntsgkltpep psflpvqmvl twlppkppta fdgfninier eenstefltv sedthkfvae
      421 lkepgkykls vttfsssgsc evrgsqsakt lnfyisptge wieeltekpq hvtvtvlsst
      481 taltswtasq dsggnstivs vvsltcqkqk esqrlekhyc tqvnssssli enlvpgaqyq
      541 vvvylrkgpl vgppsdpvtf sivptgikdl tlyplgptav vlswnrpflg vfrkyvvemf
      601 yfnpstmtse wttyyeiaat vsltasvkia nllpawyynf rvtmvtwgdp elsccdssti
      661 sfitapvape itsieyynhl lyvtwtyggd gtdlshsrml hwmviaegkk kikksvtrnv
      721 mtavlslppg diynlsvtac tergsntslp qlvklepapp kslfavnktq tsvtllwvee
      781 gvadffevyc qqagsgqetk vqepvtvssh vvtissltpa tsyncsvttf shnspsvptf
      841 iavstmvtem npnvvvisvl ailsilligl llvtlvvlrr khlqmarecg agtfvnfasl
      901 erdgklpynw rrsvfafltl lpsclwtdyl lafyinpwsk nglkkrkltn pvqlddfdgy
      961 ikdmakdsdy kfslqfeelk ligldiphfa adlpmnrckn rytnilpydf srvrlvsmne
     1021 eegsdyinan yipgynslqe yiatqgplpe trndfwkmvl qqksqiivml tqcnekrrvk
     1081 cdhywpfted pvaygditve mlseeehtdw vyrnfrisya devqdvmhfn ytawpdhgvp
     1141 ttnaaesilq fvqmvrqksa kskgpmiihc sagvgrtgtf ialdrllqhi rdhefvdilg
     1201 lvsdmrsyrm smvqteeqyi fihqcvqlmw qkkkqqfcis dviyenvsks
//
LOCUS       XP_053912257            1222 aa            linear   VRT 09-MAR-2023
DEFINITION  receptor-type tyrosine-protein phosphatase O isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912257
VERSION     XP_053912257.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056282.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1222
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1222
                     /product="receptor-type tyrosine-protein phosphatase O
                     isoform X2"
                     /calculated_mol_wt=137962
     Region          468..555
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          549..>828
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(551..552,554..555)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Site            order(757,819,834)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          759..839
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(835..836,838..839)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          957..1201
                     /region_name="R-PTPc-O"
                     /note="catalytic domain of receptor-type tyrosine-protein
                     phosphatase O; cd14614"
                     /db_xref="CDD:350462"
     CDS             1..1222
                     /gene="PTPRO"
                     /coded_by="XM_054056282.1:181..3849"
                     /db_xref="GeneID:104067841"
ORIGIN      
        1 mlpqfaiaeh gsepsggake hqpplpgqpp sppmperrrr ggpgarscll wlfvllknae
       61 pfqvtvredn siivsleasd vvssssvyvv kiagesknyf fqfeefnstl ptpvvfnary
      121 hglyyivtll vvnsnmvsks arsitvltkp lpvssvsiyd ykpspetgvl feiqypekyn
      181 vftrvnisyw egkdyrtmly kdffkgktvf nhwlpgicys nitfqlvsea tfnkstlvey
      241 sgiqhepkqh rtvpypprni svqiipinrn nweehsgnfa eesfmgpqei irkeklshfs
      301 nnapeipaan tstdwpdyry nrteyettsq pywwsneaes segeeefvna vpsdyeandv
      361 ntsgkltpep psflpvqmvl twlppkppta fdgfninier eenstefltv sedthkfvae
      421 lkepgkykls vttfsssgsc evrgsqsakt lnfyisptge wieeltekpq hvtvtvlsst
      481 taltswtasq dsggnstivs vvsltcqkqk esqrlekhyc tqvnssssli enlvpgaqyq
      541 vvvylrkgpl vgppsdpvtf sivptgikdl tlyplgptav vlswnrpflg vfrkyvvemf
      601 yfnpstmtse wttyyeiaat vsltasvkia nllpawyynf rvtmvtwgdp elsccdssti
      661 sfitapvape itsieyynhl lyvtwtyggd gtdlshsrml hwmviaegkk kikksvtrnv
      721 mtavlslppg diynlsvtac tergsntslp qlvklepapp kslfavnktq tsvtllwvee
      781 gvadffevyc qqagsgqetk vqepvtvssh vvtissltpa tsyncsvttf shnspsvptf
      841 iavstmvtem npnvvvisvl ailsilligl llvtlvvlrr khlqmarecg agtfvnfasl
      901 erdgklpynw sknglkkrkl tnpvqlddfd gyikdmakds dykfslqfee lkligldiph
      961 faadlpmnrc knrytnilpy dfsrvrlvsm neeegsdyin anyipgynsl qeyiatqgpl
     1021 petrndfwkm vlqqksqiiv mltqcnekrr vkcdhywpft edpvaygdit vemlseeeht
     1081 dwvyrnfris yadevqdvmh fnytawpdhg vpttnaaesi lqfvqmvrqk sakskgpmii
     1141 hcsagvgrtg tfialdrllq hirdhefvdi lglvsdmrsy rmsmvqteeq yifihqcvql
     1201 mwqkkkqqfc isdviyenvs ks
//
LOCUS       XP_053912258            1053 aa            linear   VRT 09-MAR-2023
DEFINITION  receptor-type tyrosine-protein phosphatase O isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053912258
VERSION     XP_053912258.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056283.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1053
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1053
                     /product="receptor-type tyrosine-protein phosphatase O
                     isoform X3"
                     /calculated_mol_wt=119289
     Region          271..358
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Region          352..>631
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(354..355,357..358)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          788..1032
                     /region_name="R-PTPc-O"
                     /note="catalytic domain of receptor-type tyrosine-protein
                     phosphatase O; cd14614"
                     /db_xref="CDD:350462"
     CDS             1..1053
                     /gene="PTPRO"
                     /coded_by="XM_054056283.1:219..3380"
                     /db_xref="GeneID:104067841"
ORIGIN      
        1 mlykdffkgk tvfnhwlpgi cysnitfqlv seatfnkstl veysgiqhep kqhrtvpypp
       61 rnisvqiipi nrnnweehsg nfaeesfmgp qeiirkekls hfsnnapeip aantstdwpd
      121 yrynrteyet tsqpywwsne aessegeeef vnavpsdyea ndvntsgklt peppsflpvq
      181 mvltwlppkp ptafdgfnin iereenstef ltvsedthkf vaelkepgky klsvttfsss
      241 gscevrgsqs aktlnfyisp tgewieelte kpqhvtvtvl ssttaltswt asqdsggnst
      301 ivsvvsltcq kqkesqrlek hyctqvnsss slienlvpga qyqvvvylrk gplvgppsdp
      361 vtfsivptgi kdltlyplgp tavvlswnrp flgvfrkyvv emfyfnpstm tsewttyyei
      421 aatvsltasv kianllpawy ynfrvtmvtw gdpelsccds stisfitapv apeitsieyy
      481 nhllyvtwty ggdgtdlshs rmlhwmviae gkkkikksvt rnvmtavlsl ppgdiynlsv
      541 tactergsnt slpqlvklep appkslfavn ktqtsvtllw veegvadffe vycqqagsgq
      601 etkvqepvtv sshvvtissl tpatsyncsv ttfshnspsv ptfiavstmv temnpnvvvi
      661 svlailsill iglllvtlvv lrrkhlqmar ecgagtfvnf aslerdgklp ynwrrsvfaf
      721 ltllpsclwt dyllafyinp wsknglkkrk ltnpvqlddf dgyikdmakd sdykfslqfe
      781 elkligldip hfaadlpmnr cknrytnilp ydfsrvrlvs mneeegsdyi nanyipgyns
      841 lqeyiatqgp lpetrndfwk mvlqqksqii vmltqcnekr rvkcdhywpf tedpvaygdi
      901 tvemlseeeh tdwvyrnfri syadevqdvm hfnytawpdh gvpttnaaes ilqfvqmvrq
      961 ksakskgpmi ihcsagvgrt gtfialdrll qhirdhefvd ilglvsdmrs yrmsmvqtee
     1021 qyifihqcvq lmwqkkkqqf cisdviyenv sks
//
LOCUS       XP_053912259             663 aa            linear   VRT 09-MAR-2023
DEFINITION  protein NEDD1 [Cuculus canorus].
ACCESSION   XP_053912259
VERSION     XP_053912259.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056284.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..663
                     /product="protein NEDD1"
                     /calculated_mol_wt=71825
     Region          27..298
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cd00200"
                     /db_xref="CDD:238121"
     Site            order(31,51,55,61..62,74..75,94,98,104..105,117..118,135,
                     140,146..147,161,178,183,190..191,204..205,223,228,
                     234..235,247,264,269,275..276,289..290)
                     /site_type="active"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     Region          38..77
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          81..117
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          123..160
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          165..202
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          210..246
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          251..288
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..663
                     /gene="NEDD1"
                     /coded_by="XM_054056284.1:144..2135"
                     /db_xref="GeneID:104055177"
ORIGIN      
        1 mqestrfass gddvkiwdss sltvveqfnp htpshpvssl cwasnnrylv tasaagdkiv
       61 vsgckskpvp lfeiaegakq trvslnssss yivsggldnt vniwdlksrk vyrnlkdhkd
      121 evtcvtynwn dcyiasgsls geiilhsitt nlssapfgyg srqpirhlqy ssfkksllgs
      181 vsdsgnvtlw dvnsqnpyhn fenahkapas eicfspvnkl llvtvgcdkr iilydssskk
      241 llttivadfp lttvdfmpdg ttlavggsrg kicqydlrql aspvktviah kgyvqcirlq
      301 fsstfsksnl tgssnkpqfv radvkagsnl ggikniaikn aapqasatvs shlpneskgg
      361 evlhektgfp hscsldvips ketdhgksad lsnfddlgrn slgdvfspvr ddntaskane
      421 dpqgkadgld fqsylsgldl lplftaalpv krnpvggstq airsgpshvv vgspvkdkae
      481 hpetdakkin lgkqepeevl kqlsklsssn vesvtlsspp sstavkapda herigksiqa
      541 dpaydlpvng tplsspkits hvttgvassl sekiaetias srpnapltsi qisfiqnmiq
      601 etmddfreac hrdivnlqve mikqfhmqln emhallerys vneslvaeie rlreenkrlr
      661 shf
//
LOCUS       XP_053912260             663 aa            linear   VRT 09-MAR-2023
DEFINITION  protein NEDD1 [Cuculus canorus].
ACCESSION   XP_053912260
VERSION     XP_053912260.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056285.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..663
                     /product="protein NEDD1"
                     /calculated_mol_wt=71825
     Region          27..298
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cd00200"
                     /db_xref="CDD:238121"
     Site            order(31,51,55,61..62,74..75,94,98,104..105,117..118,135,
                     140,146..147,161,178,183,190..191,204..205,223,228,
                     234..235,247,264,269,275..276,289..290)
                     /site_type="active"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     Region          38..77
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          81..117
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          123..160
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          165..202
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          210..246
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          251..288
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..663
                     /gene="NEDD1"
                     /coded_by="XM_054056285.1:246..2237"
                     /db_xref="GeneID:104055177"
ORIGIN      
        1 mqestrfass gddvkiwdss sltvveqfnp htpshpvssl cwasnnrylv tasaagdkiv
       61 vsgckskpvp lfeiaegakq trvslnssss yivsggldnt vniwdlksrk vyrnlkdhkd
      121 evtcvtynwn dcyiasgsls geiilhsitt nlssapfgyg srqpirhlqy ssfkksllgs
      181 vsdsgnvtlw dvnsqnpyhn fenahkapas eicfspvnkl llvtvgcdkr iilydssskk
      241 llttivadfp lttvdfmpdg ttlavggsrg kicqydlrql aspvktviah kgyvqcirlq
      301 fsstfsksnl tgssnkpqfv radvkagsnl ggikniaikn aapqasatvs shlpneskgg
      361 evlhektgfp hscsldvips ketdhgksad lsnfddlgrn slgdvfspvr ddntaskane
      421 dpqgkadgld fqsylsgldl lplftaalpv krnpvggstq airsgpshvv vgspvkdkae
      481 hpetdakkin lgkqepeevl kqlsklsssn vesvtlsspp sstavkapda herigksiqa
      541 dpaydlpvng tplsspkits hvttgvassl sekiaetias srpnapltsi qisfiqnmiq
      601 etmddfreac hrdivnlqve mikqfhmqln emhallerys vneslvaeie rlreenkrlr
      661 shf
//
LOCUS       XP_053912261             663 aa            linear   VRT 09-MAR-2023
DEFINITION  protein NEDD1 [Cuculus canorus].
ACCESSION   XP_053912261
VERSION     XP_053912261.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056286.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..663
                     /product="protein NEDD1"
                     /calculated_mol_wt=71825
     Region          27..298
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cd00200"
                     /db_xref="CDD:238121"
     Site            order(31,51,55,61..62,74..75,94,98,104..105,117..118,135,
                     140,146..147,161,178,183,190..191,204..205,223,228,
                     234..235,247,264,269,275..276,289..290)
                     /site_type="active"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     Region          38..77
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          81..117
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          123..160
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          165..202
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          210..246
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          251..288
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..663
                     /gene="NEDD1"
                     /coded_by="XM_054056286.1:108..2099"
                     /db_xref="GeneID:104055177"
ORIGIN      
        1 mqestrfass gddvkiwdss sltvveqfnp htpshpvssl cwasnnrylv tasaagdkiv
       61 vsgckskpvp lfeiaegakq trvslnssss yivsggldnt vniwdlksrk vyrnlkdhkd
      121 evtcvtynwn dcyiasgsls geiilhsitt nlssapfgyg srqpirhlqy ssfkksllgs
      181 vsdsgnvtlw dvnsqnpyhn fenahkapas eicfspvnkl llvtvgcdkr iilydssskk
      241 llttivadfp lttvdfmpdg ttlavggsrg kicqydlrql aspvktviah kgyvqcirlq
      301 fsstfsksnl tgssnkpqfv radvkagsnl ggikniaikn aapqasatvs shlpneskgg
      361 evlhektgfp hscsldvips ketdhgksad lsnfddlgrn slgdvfspvr ddntaskane
      421 dpqgkadgld fqsylsgldl lplftaalpv krnpvggstq airsgpshvv vgspvkdkae
      481 hpetdakkin lgkqepeevl kqlsklsssn vesvtlsspp sstavkapda herigksiqa
      541 dpaydlpvng tplsspkits hvttgvassl sekiaetias srpnapltsi qisfiqnmiq
      601 etmddfreac hrdivnlqve mikqfhmqln emhallerys vneslvaeie rlreenkrlr
      661 shf
//
LOCUS       XP_053912262             663 aa            linear   VRT 09-MAR-2023
DEFINITION  protein NEDD1 [Cuculus canorus].
ACCESSION   XP_053912262
VERSION     XP_053912262.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056287.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..663
                     /product="protein NEDD1"
                     /calculated_mol_wt=71825
     Region          27..298
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cd00200"
                     /db_xref="CDD:238121"
     Site            order(31,51,55,61..62,74..75,94,98,104..105,117..118,135,
                     140,146..147,161,178,183,190..191,204..205,223,228,
                     234..235,247,264,269,275..276,289..290)
                     /site_type="active"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     Region          38..77
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          81..117
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          123..160
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          165..202
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          210..246
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          251..288
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..663
                     /gene="NEDD1"
                     /coded_by="XM_054056287.1:357..2348"
                     /db_xref="GeneID:104055177"
ORIGIN      
        1 mqestrfass gddvkiwdss sltvveqfnp htpshpvssl cwasnnrylv tasaagdkiv
       61 vsgckskpvp lfeiaegakq trvslnssss yivsggldnt vniwdlksrk vyrnlkdhkd
      121 evtcvtynwn dcyiasgsls geiilhsitt nlssapfgyg srqpirhlqy ssfkksllgs
      181 vsdsgnvtlw dvnsqnpyhn fenahkapas eicfspvnkl llvtvgcdkr iilydssskk
      241 llttivadfp lttvdfmpdg ttlavggsrg kicqydlrql aspvktviah kgyvqcirlq
      301 fsstfsksnl tgssnkpqfv radvkagsnl ggikniaikn aapqasatvs shlpneskgg
      361 evlhektgfp hscsldvips ketdhgksad lsnfddlgrn slgdvfspvr ddntaskane
      421 dpqgkadgld fqsylsgldl lplftaalpv krnpvggstq airsgpshvv vgspvkdkae
      481 hpetdakkin lgkqepeevl kqlsklsssn vesvtlsspp sstavkapda herigksiqa
      541 dpaydlpvng tplsspkits hvttgvassl sekiaetias srpnapltsi qisfiqnmiq
      601 etmddfreac hrdivnlqve mikqfhmqln emhallerys vneslvaeie rlreenkrlr
      661 shf
//
LOCUS       XP_053912263             663 aa            linear   VRT 09-MAR-2023
DEFINITION  protein NEDD1 [Cuculus canorus].
ACCESSION   XP_053912263
VERSION     XP_053912263.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056288.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..663
                     /product="protein NEDD1"
                     /calculated_mol_wt=71825
     Region          27..298
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cd00200"
                     /db_xref="CDD:238121"
     Site            order(31,51,55,61..62,74..75,94,98,104..105,117..118,135,
                     140,146..147,161,178,183,190..191,204..205,223,228,
                     234..235,247,264,269,275..276,289..290)
                     /site_type="active"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     Region          38..77
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          81..117
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          123..160
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          165..202
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          210..246
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          251..288
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..663
                     /gene="NEDD1"
                     /coded_by="XM_054056288.1:155..2146"
                     /db_xref="GeneID:104055177"
ORIGIN      
        1 mqestrfass gddvkiwdss sltvveqfnp htpshpvssl cwasnnrylv tasaagdkiv
       61 vsgckskpvp lfeiaegakq trvslnssss yivsggldnt vniwdlksrk vyrnlkdhkd
      121 evtcvtynwn dcyiasgsls geiilhsitt nlssapfgyg srqpirhlqy ssfkksllgs
      181 vsdsgnvtlw dvnsqnpyhn fenahkapas eicfspvnkl llvtvgcdkr iilydssskk
      241 llttivadfp lttvdfmpdg ttlavggsrg kicqydlrql aspvktviah kgyvqcirlq
      301 fsstfsksnl tgssnkpqfv radvkagsnl ggikniaikn aapqasatvs shlpneskgg
      361 evlhektgfp hscsldvips ketdhgksad lsnfddlgrn slgdvfspvr ddntaskane
      421 dpqgkadgld fqsylsgldl lplftaalpv krnpvggstq airsgpshvv vgspvkdkae
      481 hpetdakkin lgkqepeevl kqlsklsssn vesvtlsspp sstavkapda herigksiqa
      541 dpaydlpvng tplsspkits hvttgvassl sekiaetias srpnapltsi qisfiqnmiq
      601 etmddfreac hrdivnlqve mikqfhmqln emhallerys vneslvaeie rlreenkrlr
      661 shf
//
LOCUS       XP_009562734             371 aa            linear   VRT 09-MAR-2023
DEFINITION  arg8-vasotocin receptor [Cuculus canorus].
ACCESSION   XP_009562734
VERSION     XP_009562734.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009564439.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009562734.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..371
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..371
                     /product="arg8-vasotocin receptor"
                     /calculated_mol_wt=42289
     Region          44..338
                     /region_name="7tmA_V2R"
                     /note="vasopressin receptor 2, member of the class A
                     family of seven-transmembrane G protein-coupled receptors;
                     cd15388"
                     /db_xref="CDD:320510"
     Region          45..71
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320510"
     Region          78..105
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320510"
     Site            order(101,104..105,116..121,123..124,127,171,173..177,203,
                     206..208,210..212,214..215,286,289..290,292..293,296,
                     305..306,308..310,313,316..317)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:320510"
     Region          116..146
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320510"
     Region          158..179
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320510"
     Region          203..232
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320510"
     Region          266..296
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320510"
     Region          306..331
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320510"
     CDS             1..371
                     /gene="LOC104062394"
                     /coded_by="XM_009564439.2:842..1957"
                     /db_xref="GeneID:104062394"
ORIGIN      
        1 mknfsftvqg nthetespsp hrflsltnqs davgrperde qlaqveiavl gvifltasvg
       61 nfvlilvlwr rrkklsrmyv fmlhlsiadl vvaffqvlpq liwditdvfi gpdflcrivk
      121 ylqllgmfas tymivvmtvd ryqavcypmv tfqkkralwn ipicsswsvs lilslpqvfi
      181 fskteispgi fecwgefiqp wgprayvtwi fvviffipsa ilitcqvkic kiikrniyvk
      241 kqneyeitnq kqvlpsrass vnciskamik tvkmtvvtvv ayvlcwspff iaqlwsvwfp
      301 svvtegsaft iimllgnlns ctnpwiymyf cghipyctnk qlentsaqee svitgsvhlv
      361 drdpeensts a
//
LOCUS       XP_009566878             775 aa            linear   VRT 09-MAR-2023
DEFINITION  semaphorin-3E [Cuculus canorus].
ACCESSION   XP_009566878
VERSION     XP_009566878.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568583.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..775
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..775
                     /product="semaphorin-3E"
                     /calculated_mol_wt=89615
     Region          49..519
                     /region_name="Sema_3E"
                     /note="The Sema domain, a protein interacting module, of
                     semaphorin 3E (Sema3E); cd11253"
                     /db_xref="CDD:200514"
     Site            order(106..109,167..168,172,193,195..196,203,213,216..217,
                     219,224,253,277..281,283,399,403,406)
                     /site_type="other"
                     /note="putative plexin binding site [polypeptide binding]"
                     /db_xref="CDD:200514"
     Site            order(254..255,257,260..262,296,299..300,302,304,308,
                     331..338,364..367,412,427)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:200514"
     Region          518..566
                     /region_name="PSI"
                     /note="domain found in Plexins, Semaphorins and Integrins;
                     smart00423"
                     /db_xref="CDD:214655"
     Region          584..675
                     /region_name="Ig_Sema3"
                     /note="Immunoglobulin (Ig)-like domain of class III
                     semaphorin Sema3; cd05871"
                     /db_xref="CDD:409455"
     Region          584..590
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409455"
     Region          595..603
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409455"
     Site            order(597,642)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:409455"
     Region          609..615
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409455"
     Region          617..620
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409455"
     Region          630..634
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409455"
     Region          637..644
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409455"
     Region          650..659
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409455"
     Region          662..675
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409455"
     CDS             1..775
                     /gene="SEMA3E"
                     /coded_by="XM_009568583.2:401..2728"
                     /db_xref="GeneID:104066039"
ORIGIN      
        1 masaqdllil alyglllelp tgchatdtrq prlrlshkel wdlnrtsvfh spfgylglhi
       61 mlldeyqdrl fvggrdllys lsldrvsdny reihwpstpl qaeeciikgr dadecanyir
      121 vlhrynrthl lacgtgafdp ictfiraghs sedhlfqles hkfergrgrc pfdpsssfts
      181 iliggelftg lysdywgrda alfrtmnrva hlrtepdner llkepkfvgs ymipdnedhd
      241 dnkvyfffte kaleaetsth aiytrvgrvc andmggqrml vnkwstflkt rlvcsvpgrn
      301 gidthfdele dvfllqtrdn knpvifglfn ttsnifrgya icvyhmasvr aafngpyahk
      361 egpeyhwaly egkvpyprpg scaskvnggl ytttkdypde aihfarshpl myqpirpvhk
      421 rpilvktdgk ynlkqiavdr veaedgqydv lfigtdngiv lkvitiynqe tesmeevile
      481 elqifkvpvp iismeisskr qqlyigtesv iaqvkfhqcd mygtacadcc lardpycawd
      541 giscsryypt gmqakrrfrr qdvrhgnaaq qcfgqqfige vlekteerlv ygieynstll
      601 ectprtlqak viwfvqrahe tkreevktdd riikmdlgll flklhrldag iyfcqtvehs
      661 ivhtvrkitl eiveeervde mfnkdyeeei phkmpcpmqs sipqaskpwy keflqligys
      721 nfqrveeyce kvwctdkkrk klkmspskwk yanpqekkar irpehyrlpr niads
//
LOCUS       XP_053912265             317 aa            linear   VRT 09-MAR-2023
DEFINITION  BTB/POZ domain-containing protein KCTD12 [Cuculus canorus].
ACCESSION   XP_053912265
VERSION     XP_053912265.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056290.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..317
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..317
                     /product="BTB/POZ domain-containing protein KCTD12"
                     /calculated_mol_wt=34491
     Region          30..122
                     /region_name="BTB_POZ_KCTD8-like"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     channel tetramerization domain-containing proteins, KCTD8,
                     KCTD12, KCTD16 and similar proteins; cd18367"
                     /db_xref="CDD:349676"
     Site            order(37,39..40,71..74,77,79,81..83,85..86,105..110,113,
                     117)
                     /site_type="other"
                     /note="putative homodimer interface [polypeptide binding]"
                     /db_xref="CDD:349676"
     Region          197..317
                     /region_name="H1_KCTD12"
                     /note="H1 domain found in potassium channel
                     tetramerization domain-containing protein 12; cd22217"
                     /db_xref="CDD:409028"
     Site            order(199..200,202,206,209,218,220..222,228,230..231,248,
                     257,259..260,267,269..270,272..273,276,282,284..291,306,
                     308,311..312,314)
                     /site_type="other"
                     /note="pentamer interface [polypeptide binding]"
                     /db_xref="CDD:409028"
     Site            order(223,245,247..248,251..254,260,262,267,305)
                     /site_type="other"
                     /note="G protein beta subunit interface [polypeptide
                     binding]"
                     /db_xref="CDD:409028"
     CDS             1..317
                     /gene="KCTD12"
                     /coded_by="XM_054056290.1:176..1129"
                     /db_xref="GeneID:128850929"
ORIGIN      
        1 maladsargm pngggvpgaa gsaaggwssf peivelnvgg qvyvtrrctv vsvrdsllwr
       61 mfsqqqpsel prdskgrffl drdgflfryi ldylrdlqlv lpehfpersr lqreaeyfql
      121 pdlarrlaqa raarpaalpr dgsvcaedpp llgyleaepa egggaaacap sptgsrspsg
      181 aplltpsqsl dgaggrrsgy itigyrgsyt igreaqadak frrvaritvc gktalakevf
      241 getlnesrdp drpperytar yylkfnfleq afdrlseagf rmaacsstgt cafapeqggp
      301 addkiwtsyt eyvfcrd
//
LOCUS       XP_053912266             505 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA-splicing ligase RtcB homolog [Cuculus canorus].
ACCESSION   XP_053912266
VERSION     XP_053912266.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056291.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..505
                     /product="RNA-splicing ligase RtcB homolog"
                     /calculated_mol_wt=55097
     Region          12..505
                     /region_name="RtcB"
                     /note="RNA-splicing ligase RtcB, repairs tRNA damage
                     [Translation, ribosomal structure and biogenesis];
                     COG1690"
                     /db_xref="CDD:441296"
     CDS             1..505
                     /gene="RTCB"
                     /coded_by="XM_054056291.1:63..1580"
                     /db_xref="GeneID:104056363"
ORIGIN      
        1 msrsyndelq yldkidkncw rikkgfvpnm hvegvfyvnd pleklmfeel rnacrgggag
       61 gflpamkqig nvaalpgivh rsiglpdvhs gygfaignma afdmndpeav vspggvgfdi
      121 ncgvrllrtn ldesdvqpvk eqlaqamfdh ipvgvgskgv ipmnakdlee alemgvdwsl
      181 regyawaedk ehceeygrml qadpnkvssr akkrglpqlg tlgagnhyae iqvvdeiyne
      241 yaarkmgidh kgqvcvmihs gsrglghqva tdalvameka mkrdkiivnd rqlacarias
      301 aegqdylkgm aaagnyawvn rssmtfltrq afakvfnttp ddldmhviyd vshniakveq
      361 hvvdgkertl lvhrkgstra fpphhpliav dyqltgqpvl iggtmgtcsy vltgteqgmt
      421 etfgttchga gralsraksr rnldfqdvld kladmgiair vaspklvmee apesyknvtd
      481 vvntchaagi skkaiklrpi avikg
//
LOCUS       XP_053912267             565 aa            linear   VRT 09-MAR-2023
DEFINITION  PHD finger protein 21B isoform X1 [Cuculus canorus].
ACCESSION   XP_053912267
VERSION     XP_053912267.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056292.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..565
                     /product="PHD finger protein 21B isoform X1"
                     /calculated_mol_wt=60430
     Region          <100..326
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          386..428
                     /region_name="PHD_PHF21B"
                     /note="PHD finger found in PHD finger protein 21B
                     (PHF21B); cd15524"
                     /db_xref="CDD:276999"
     Site            order(386,395..399,403,423)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:276999"
     CDS             1..565
                     /gene="PHF21B"
                     /coded_by="XM_054056292.1:59..1756"
                     /db_xref="GeneID:104062816"
ORIGIN      
        1 melhslqeal kveiqchqkl vaqmkqdpqn gdlkkqiher qsriaalnek qklsvlvggg
       61 asgsakpggg ivpallkapv gsgsgsgsag qslsisvlpa kapiamvtah lnggaaeppq
      121 napinlqsaa klgaarrqpe sgahaqtlgt itavpikvpq vsslqrlagq gpavlpqvrp
      181 ktlipdslpi spcrdqaskq pptfqkatvv siknpspalp tanntvshvq tpssqsqsvt
      241 esttisspls sagvayaiis tspsnatpis tsatvsvvne sikvqpllis adnkviiiqp
      301 qvqtqteskv etkkppeesa qgppatkkkk eenpekiafm valglvtteh leeiqskrqe
      361 rkrrstanpa ysglletene ihhdehctac krgvnlqpcg tcprayhlnc ldpplktapk
      421 gvwvcpkcqq kvlkkddnvp wtgtlaivhs yvthktvkee ekrkllkrss elksehrqle
      481 ekdrllnnav kkclelktsl laqqkgtqss lerlktlirl iqneqmiqvt mtttttssll
      541 tvpwikpssa saamhkalqq sqgnn
//
LOCUS       XP_053912268             554 aa            linear   VRT 09-MAR-2023
DEFINITION  PHD finger protein 21B isoform X2 [Cuculus canorus].
ACCESSION   XP_053912268
VERSION     XP_053912268.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056293.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..554
                     /product="PHD finger protein 21B isoform X2"
                     /calculated_mol_wt=59162
     Region          <89..315
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          375..417
                     /region_name="PHD_PHF21B"
                     /note="PHD finger found in PHD finger protein 21B
                     (PHF21B); cd15524"
                     /db_xref="CDD:276999"
     Site            order(375,384..388,392,412)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:276999"
     CDS             1..554
                     /gene="PHF21B"
                     /coded_by="XM_054056293.1:16..1680"
                     /db_xref="GeneID:104062816"
ORIGIN      
        1 melhslqeal kveiqchqng dlkkqiherq sriaalnekq klsvlvggga sgsakpgggi
       61 vpallkapvg sgsgsgsagq slsisvlpak apiamvtahl nggaaeppqn apinlqsaak
      121 lgaarrqpes gahaqtlgti tavpikvpqv sslqrlagqg pavlpqvrpk tlipdslpis
      181 pcrdqaskqp ptfqkatvvs iknpspalpt anntvshvqt pssqsqsvte sttissplss
      241 agvayaiist spsnatpist satvsvvnes ikvqpllisa dnkviiiqpq vqtqteskve
      301 tkkppeesaq gppatkkkke enpekiafmv alglvttehl eeiqskrqer krrstanpay
      361 sglletenei hhdehctack rgvnlqpcgt cprayhlncl dpplktapkg vwvcpkcqqk
      421 vlkkddnvpw tgtlaivhsy vthktvkeee krkllkrsse lksehrqlee kdrllnnavk
      481 kclelktsll aqqkgtqssl erlktlirli qneqmiqvtm tttttssllt vpwikpssas
      541 aamhkalqqs qgnn
//
LOCUS       XP_053912270             544 aa            linear   VRT 09-MAR-2023
DEFINITION  PHD finger protein 21B isoform X3 [Cuculus canorus].
ACCESSION   XP_053912270
VERSION     XP_053912270.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056295.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..544
                     /product="PHD finger protein 21B isoform X3"
                     /calculated_mol_wt=58242
     Region          <14..305
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          365..407
                     /region_name="PHD_PHF21B"
                     /note="PHD finger found in PHD finger protein 21B
                     (PHF21B); cd15524"
                     /db_xref="CDD:276999"
     Site            order(365,374..378,382,402)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:276999"
     CDS             1..544
                     /gene="PHF21B"
                     /coded_by="XM_054056295.1:2..1636"
                     /db_xref="GeneID:104062816"
ORIGIN      
        1 mqqpvqhwgc gqrplprsrr lppwererrh klsvlvggga sgsakpgggi vpallkapvg
       61 sgsgsgsagq slsisvlpak apiamvtahl nggaaeppqn apinlqsaak lgaarrqpes
      121 gahaqtlgti tavpikvpqv sslqrlagqg pavlpqvrpk tlipdslpis pcrdqaskqp
      181 ptfqkatvvs iknpspalpt anntvshvqt pssqsqsvte sttissplss agvayaiist
      241 spsnatpist satvsvvnes ikvqpllisa dnkviiiqpq vqtqteskve tkkppeesaq
      301 gppatkkkke enpekiafmv alglvttehl eeiqskrqer krrstanpay sglletenei
      361 hhdehctack rgvnlqpcgt cprayhlncl dpplktapkg vwvcpkcqqk vlkkddnvpw
      421 tgtlaivhsy vthktvkeee krkllkrsse lksehrqlee kdrllnnavk kclelktsll
      481 aqqkgtqssl erlktlirli qneqmiqvtm tttttssllt vpwikpssas aamhkalqqs
      541 qgnn
//
LOCUS       XP_053912271             532 aa            linear   VRT 09-MAR-2023
DEFINITION  PHD finger protein 21B isoform X4 [Cuculus canorus].
ACCESSION   XP_053912271
VERSION     XP_053912271.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056296.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..532
                     /product="PHD finger protein 21B isoform X4"
                     /calculated_mol_wt=56603
     Region          <67..293
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          353..395
                     /region_name="PHD_PHF21B"
                     /note="PHD finger found in PHD finger protein 21B
                     (PHF21B); cd15524"
                     /db_xref="CDD:276999"
     Site            order(353,362..366,370,390)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:276999"
     CDS             1..532
                     /gene="PHF21B"
                     /coded_by="XM_054056296.1:49..1647"
                     /db_xref="GeneID:104062816"
ORIGIN      
        1 melhslqeal kveiqchqkl svlvgggasg sakpgggivp allkapvgsg sgsgsagqsl
       61 sisvlpakap iamvtahlng gaaeppqnap inlqsaaklg aarrqpesga haqtlgtita
      121 vpikvpqvss lqrlagqgpa vlpqvrpktl ipdslpispc rdqaskqppt fqkatvvsik
      181 npspalptan ntvshvqtps sqsqsvtest tissplssag vayaiistsp snatpistsa
      241 tvsvvnesik vqpllisadn kviiiqpqvq tqteskvetk kppeesaqgp patkkkkeen
      301 pekiafmval glvttehlee iqskrqerkr rstanpaysg lleteneihh dehctackrg
      361 vnlqpcgtcp rayhlncldp plktapkgvw vcpkcqqkvl kkddnvpwtg tlaivhsyvt
      421 hktvkeeekr kllkrsselk sehrqleekd rllnnavkkc lelktsllaq qkgtqssler
      481 lktlirliqn eqmiqvtmtt tttsslltvp wikpssasaa mhkalqqsqg nn
//
LOCUS       XP_053912272             591 aa            linear   VRT 09-MAR-2023
DEFINITION  PHD finger protein 21B isoform X5 [Cuculus canorus].
ACCESSION   XP_053912272
VERSION     XP_053912272.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056297.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..591
                     /product="PHD finger protein 21B isoform X5"
                     /calculated_mol_wt=63563
     Region          <100..326
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          412..454
                     /region_name="PHD_PHF21B"
                     /note="PHD finger found in PHD finger protein 21B
                     (PHF21B); cd15524"
                     /db_xref="CDD:276999"
     Site            order(412,421..425,429,449)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:276999"
     CDS             1..591
                     /gene="PHF21B"
                     /coded_by="XM_054056297.1:59..1834"
                     /db_xref="GeneID:104062816"
ORIGIN      
        1 melhslqeal kveiqchqkl vaqmkqdpqn gdlkkqiher qsriaalnek qklsvlvggg
       61 asgsakpggg ivpallkapv gsgsgsgsag qslsisvlpa kapiamvtah lnggaaeppq
      121 napinlqsaa klgaarrqpe sgahaqtlgt itavpikvpq vsslqrlagq gpavlpqvrp
      181 ktlipdslpi spcrdqaskq pptfqkatvv siknpspalp tanntvshvq tpssqsqsvt
      241 esttisspls sagvayaiis tspsnatpis tsatvsvvne sikvqpllis adnkviiiqp
      301 qvqtqteskv etkkppeesa qgppatkkkk eenpekiafm valglvtteh leeiqskrqe
      361 rkrrstanpa ysglleterk rlasnylnnp lflstraned pfwkneihhd ehctackrgv
      421 nlqpcgtcpr ayhlncldpp lktapkgvwv cpkcqqkvlk kddnvpwtgt laivhsyvth
      481 ktvkeeekrk llkrsselks ehrqleekdr llnnavkkcl elktsllaqq kgtqsslerl
      541 ktlirliqne qmiqvtmttt ttsslltvpw ikpssasaam hkalqqsqgn n
//
LOCUS       XP_053912273             516 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactomedin-4 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912273
VERSION     XP_053912273.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056298.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..516
                     /product="olfactomedin-4 isoform X1"
                     /calculated_mol_wt=58011
     Region          <109..239
                     /region_name="PRK03918"
                     /note="DNA double-strand break repair ATPase Rad50"
                     /db_xref="CDD:235175"
     Region          260..512
                     /region_name="OLF"
                     /note="Olfactomedin-like domain; pfam02191"
                     /db_xref="CDD:460482"
     CDS             1..516
                     /gene="OLFM4"
                     /coded_by="XM_054056298.1:17..1567"
                     /db_xref="GeneID:104056538"
ORIGIN      
        1 mkhtqvavll lmqsmtaltg tmattevvph lnaalpsliq pgstngflhg speiphlgat
       61 lpsliqpgnt agglhgspel fanasgsvdd kgacqcfvyl pdttfpvqka ekleiiattl
      121 vekferelsq vrkysklivq yqqqihnltv rveymekssv sfteldfell rveilelerl
      181 vtqlksslvg snviveqiyl eitnltllvn qlesldknnv lairkqivsl qtrlkecees
      241 anktteppyf ppgscvhrgl lnvsqpyvvk lnwkgfsyky gswgrdysps npeaevywva
      301 plntdgryle yyriyssfdn lllfkptyer ritygegsga alynnslyyh aygsgymvkh
      361 diktntmilr kilpgaatgn rfsyagvawq didfavdesg lwviystenn mgniviskln
      421 ettldvlntw qtrqykpsvs nafmlcgvly atrpvstree eifymydtst gqegrisvim
      481 dkkldtiqsi dyspadqkly vyndgyllry dvalqs
//
LOCUS       XP_053912274             519 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactomedin-4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912274
VERSION     XP_053912274.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056299.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..519
                     /product="olfactomedin-4 isoform X2"
                     /calculated_mol_wt=59008
     Region          <112..242
                     /region_name="PRK03918"
                     /note="DNA double-strand break repair ATPase Rad50"
                     /db_xref="CDD:235175"
     Region          263..515
                     /region_name="OLF"
                     /note="Olfactomedin-like domain; pfam02191"
                     /db_xref="CDD:460482"
     CDS             1..519
                     /gene="OLFM4"
                     /coded_by="XM_054056299.1:1247..2806"
                     /db_xref="GeneID:104056538"
ORIGIN      
        1 msgkgksksp plipmnlnsw vmcyscgvka fldhqphats nqvndgqqit pensllsysp
       61 ylpllgpkqm llglretrrl dglfanasgs vddkgacqcf vylpdttfpv qkaekleiia
      121 ttlvekfere lsqvrkyskl ivqyqqqihn ltvrveymek ssvsfteldf ellrveilel
      181 erlvtqlkss lvgsnviveq iyleitnltl lvnqlesldk nnvlairkqi vslqtrlkec
      241 eesankttep pyfppgscvh rgllnvsqpy vvklnwkgfs ykygswgrdy spsnpeaevy
      301 wvaplntdgr yleyyriyss fdnlllfkpt yerritygeg sgaalynnsl yyhaygsgym
      361 vkhdiktntm ilrkilpgaa tgnrfsyagv awqdidfavd esglwviyst ennmgnivis
      421 klnettldvl ntwqtrqykp svsnafmlcg vlyatrpvst reeeifymyd tstgqegris
      481 vimdkkldti qsidyspadq klyvyndgyl lrydvalqs
//
LOCUS       XP_053912275             519 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactomedin-4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912275
VERSION     XP_053912275.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056300.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..519
                     /product="olfactomedin-4 isoform X2"
                     /calculated_mol_wt=59008
     Region          <112..242
                     /region_name="PRK03918"
                     /note="DNA double-strand break repair ATPase Rad50"
                     /db_xref="CDD:235175"
     Region          263..515
                     /region_name="OLF"
                     /note="Olfactomedin-like domain; pfam02191"
                     /db_xref="CDD:460482"
     CDS             1..519
                     /gene="OLFM4"
                     /coded_by="XM_054056300.1:232..1791"
                     /db_xref="GeneID:104056538"
ORIGIN      
        1 msgkgksksp plipmnlnsw vmcyscgvka fldhqphats nqvndgqqit pensllsysp
       61 ylpllgpkqm llglretrrl dglfanasgs vddkgacqcf vylpdttfpv qkaekleiia
      121 ttlvekfere lsqvrkyskl ivqyqqqihn ltvrveymek ssvsfteldf ellrveilel
      181 erlvtqlkss lvgsnviveq iyleitnltl lvnqlesldk nnvlairkqi vslqtrlkec
      241 eesankttep pyfppgscvh rgllnvsqpy vvklnwkgfs ykygswgrdy spsnpeaevy
      301 wvaplntdgr yleyyriyss fdnlllfkpt yerritygeg sgaalynnsl yyhaygsgym
      361 vkhdiktntm ilrkilpgaa tgnrfsyagv awqdidfavd esglwviyst ennmgnivis
      421 klnettldvl ntwqtrqykp svsnafmlcg vlyatrpvst reeeifymyd tstgqegris
      481 vimdkkldti qsidyspadq klyvyndgyl lrydvalqs
//
LOCUS       XP_053912276             512 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactomedin-4 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912276
VERSION     XP_053912276.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056301.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..512
                     /product="olfactomedin-4 isoform X3"
                     /calculated_mol_wt=57710
     Region          <105..235
                     /region_name="PRK03918"
                     /note="DNA double-strand break repair ATPase Rad50"
                     /db_xref="CDD:235175"
     Region          256..508
                     /region_name="OLF"
                     /note="Olfactomedin-like domain; pfam02191"
                     /db_xref="CDD:460482"
     CDS             1..512
                     /gene="OLFM4"
                     /coded_by="XM_054056301.1:4..1542"
                     /db_xref="GeneID:104056538"
ORIGIN      
        1 mlshlltekm khtqvavlll mqsmtaltgt mattevpgst ngflhgspei phlgatlpsl
       61 iqpgntaggl hgspelfana sgsvddkgac qcfvylpdtt fpvqkaekle iiattlvekf
      121 erelsqvrky sklivqyqqq ihnltvrvey mekssvsfte ldfellrvei lelerlvtql
      181 ksslvgsnvi veqiyleitn ltllvnqles ldknnvlair kqivslqtrl keceesankt
      241 teppyfppgs cvhrgllnvs qpyvvklnwk gfsykygswg rdyspsnpea evywvaplnt
      301 dgryleyyri yssfdnlllf kptyerrity gegsgaalyn nslyyhaygs gymvkhdikt
      361 ntmilrkilp gaatgnrfsy agvawqdidf avdesglwvi ystennmgni visklnettl
      421 dvlntwqtrq ykpsvsnafm lcgvlyatrp vstreeeify mydtstgqeg risvimdkkl
      481 dtiqsidysp adqklyvynd gyllrydval qs
//
LOCUS       XP_053912277             499 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactomedin-4 isoform X4 [Cuculus canorus].
ACCESSION   XP_053912277
VERSION     XP_053912277.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056302.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..499
                     /product="olfactomedin-4 isoform X4"
                     /calculated_mol_wt=56429
     Region          <92..222
                     /region_name="PRK03918"
                     /note="DNA double-strand break repair ATPase Rad50"
                     /db_xref="CDD:235175"
     Region          243..495
                     /region_name="OLF"
                     /note="Olfactomedin-like domain; pfam02191"
                     /db_xref="CDD:460482"
     CDS             1..499
                     /gene="OLFM4"
                     /coded_by="XM_054056302.1:4..1503"
                     /db_xref="GeneID:104056538"
ORIGIN      
        1 mlshlltekm khtqvavlll mqsmtaltgt matteviphl gatlpsliqp gntagglhgs
       61 pelfanasgs vddkgacqcf vylpdttfpv qkaekleiia ttlvekfere lsqvrkyskl
      121 ivqyqqqihn ltvrveymek ssvsfteldf ellrveilel erlvtqlkss lvgsnviveq
      181 iyleitnltl lvnqlesldk nnvlairkqi vslqtrlkec eesankttep pyfppgscvh
      241 rgllnvsqpy vvklnwkgfs ykygswgrdy spsnpeaevy wvaplntdgr yleyyriyss
      301 fdnlllfkpt yerritygeg sgaalynnsl yyhaygsgym vkhdiktntm ilrkilpgaa
      361 tgnrfsyagv awqdidfavd esglwviyst ennmgnivis klnettldvl ntwqtrqykp
      421 svsnafmlcg vlyatrpvst reeeifymyd tstgqegris vimdkkldti qsidyspadq
      481 klyvyndgyl lrydvalqs
//
LOCUS       XP_053912278             481 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactomedin-4 isoform X5 [Cuculus canorus].
ACCESSION   XP_053912278
VERSION     XP_053912278.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056303.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..481
                     /product="olfactomedin-4 isoform X5"
                     /calculated_mol_wt=55061
     Region          <74..204
                     /region_name="PRK03918"
                     /note="DNA double-strand break repair ATPase Rad50"
                     /db_xref="CDD:235175"
     Region          225..477
                     /region_name="OLF"
                     /note="Olfactomedin-like domain; pfam02191"
                     /db_xref="CDD:460482"
     CDS             1..481
                     /gene="OLFM4"
                     /coded_by="XM_054056303.1:16..1461"
                     /db_xref="GeneID:104056538"
ORIGIN      
        1 mrhpgrlhpr lraensllsy spylpllgpk qmllglretr rldglfanas gsvddkgacq
       61 cfvylpdttf pvqkaeklei iattlvekfe relsqvrkys klivqyqqqi hnltvrveym
      121 ekssvsftel dfellrveil elerlvtqlk sslvgsnviv eqiyleitnl tllvnqlesl
      181 dknnvlairk qivslqtrlk eceesanktt eppyfppgsc vhrgllnvsq pyvvklnwkg
      241 fsykygswgr dyspsnpeae vywvaplntd gryleyyriy ssfdnlllfk ptyerrityg
      301 egsgaalynn slyyhaygsg ymvkhdiktn tmilrkilpg aatgnrfsya gvawqdidfa
      361 vdesglwviy stennmgniv isklnettld vlntwqtrqy kpsvsnafml cgvlyatrpv
      421 streeeifym ydtstgqegr isvimdkkld tiqsidyspa dqklyvyndg yllrydvalq
      481 s
//
LOCUS       XP_053912279             464 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactomedin-4 isoform X6 [Cuculus canorus].
ACCESSION   XP_053912279
VERSION     XP_053912279.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056304.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..464
                     /product="olfactomedin-4 isoform X6"
                     /calculated_mol_wt=52858
     Region          <57..187
                     /region_name="PRK03918"
                     /note="DNA double-strand break repair ATPase Rad50"
                     /db_xref="CDD:235175"
     Region          208..460
                     /region_name="OLF"
                     /note="Olfactomedin-like domain; pfam02191"
                     /db_xref="CDD:460482"
     CDS             1..464
                     /gene="OLFM4"
                     /coded_by="XM_054056304.1:21..1415"
                     /db_xref="GeneID:104056538"
ORIGIN      
        1 mkhtqvavll lmqsmtaltg tmattevlfa nasgsvddkg acqcfvylpd ttfpvqkaek
       61 leiiattlve kferelsqvr kysklivqyq qqihnltvrv eymekssvsf teldfellrv
      121 eilelerlvt qlksslvgsn viveqiylei tnltllvnql esldknnvla irkqivslqt
      181 rlkeceesan ktteppyfpp gscvhrglln vsqpyvvkln wkgfsykygs wgrdyspsnp
      241 eaevywvapl ntdgryleyy riyssfdnll lfkptyerri tygegsgaal ynnslyyhay
      301 gsgymvkhdi ktntmilrki lpgaatgnrf syagvawqdi dfavdesglw viystennmg
      361 nivisklnet tldvlntwqt rqykpsvsna fmlcgvlyat rpvstreeei fymydtstgq
      421 egrisvimdk kldtiqsidy spadqklyvy ndgyllrydv alqs
//
LOCUS       XP_009561590             197 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-22 [Cuculus canorus].
ACCESSION   XP_009561590
VERSION     XP_009561590.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563295.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561590.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..197
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..197
                     /product="interleukin-22"
                     /calculated_mol_wt=22450
     Region          46..184
                     /region_name="IL10"
                     /note="Interleukin 10; cl02501"
                     /db_xref="CDD:413341"
     CDS             1..197
                     /gene="IL22"
                     /coded_by="XM_009563295.2:1..594"
                     /db_xref="GeneID:104061358"
ORIGIN      
        1 maclqsltks fsgwvifccc cylpllltsp lppkgpglas tahhtcrlrk infqqpyirn
       61 rtytlakmar vsdhdtdnrl igqqlyvnvr ennrcylmkr iaelvvkdvl lttakdrypy
      121 ieevaqflas ltlemsrckf sghrehiekn leemkskmkq lgengkikai geldllfdym
      181 enactdapkk ggkkkkn
//
LOCUS       XP_053912280             729 aa            linear   VRT 09-MAR-2023
DEFINITION  sex comb on midleg-like protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912280
VERSION     XP_053912280.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056305.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..729
                     /product="sex comb on midleg-like protein 2 isoform X1"
                     /calculated_mol_wt=80225
     Region          32..162
                     /region_name="MBT"
                     /note="malignant brain tumor (MBT) repeat; cl45897"
                     /db_xref="CDD:459242"
     Site            order(73,76,79,81,97,100,104)
                     /site_type="other"
                     /note="putative methyllysine peptide binding site
                     [polypeptide binding]"
                     /db_xref="CDD:439080"
     Region          167..243
                     /region_name="MBT_SCML2_rpt2"
                     /note="second malignant brain tumor (MBT) repeat found in
                     sex comb on midleg-like protein 2 (SCML2) and similar
                     proteins; cd20109"
                     /db_xref="CDD:439099"
     Site            order(182,185,187..188,190,206,209,213,239..241)
                     /site_type="other"
                     /note="methyllysine peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:439099"
     Region          276..>318
                     /region_name="RBR"
                     /note="RNA binding Region; pfam17208"
                     /db_xref="CDD:465382"
     Region          372..481
                     /region_name="SLED"
                     /note="SLED domain; pfam12140"
                     /db_xref="CDD:463469"
     Region          655..726
                     /region_name="SAM_Scm"
                     /note="SAM domain of Scm proteins of Polycomb group;
                     cd09578"
                     /db_xref="CDD:188977"
     Site            order(674,710..713,715..716,719,722)
                     /site_type="other"
                     /note="oligomer interface EH [polypeptide binding]"
                     /db_xref="CDD:188977"
     Site            order(687..691,693..694,697..698,701..702,704..707)
                     /site_type="other"
                     /note="oligomer interface ML [polypeptide binding]"
                     /db_xref="CDD:188977"
     CDS             1..729
                     /gene="SCML2"
                     /coded_by="XM_054056305.1:158..2347"
                     /db_xref="GeneID:104063390"
ORIGIN      
        1 mgrttakdsk nnkkekdgkn qqannpslks eqfnwddylk etesvaaplh cfrqsrippt
       61 ndfkvgmkle ardprnvtsv ciatvigitg arlrlrldgs dnkndfwrlv dssdiqpigt
      121 cekkggmlqp plgfqmnass wpmfllrtln gaemapaaff kkeppkpvpn cfkvgmklea
      181 idrknpylic patigdvkgd evfvtfdgws gafdywcrcd srdifpvgwc sltgdalqpp
      241 gsnvsitkss akiqsspskv trrsmqspqk papvpahrgr kpgrgkppgq savpkkgrsp
      301 knipltksts htenlktrkk slkpgkkkkv lpeqltpasp sphsspegds gttqilkdgv
      361 slsgataavm stvcvyvnkh gnsgphldkk kvqqlpdhfg pgpvnvvlqq avqacvdcay
      421 qsktvfgflk sghhggemit asfdgekhai nlpsvnsasf vlrfleklch slqcdnlfss
      481 qpfspymgca hspmeydrnk pakeeitdnr sakrysqdsp pytaplspkl prndahpsea
      541 etlpieenst skehrfseds mdsalnsvnp ssptrrnste yrtsesaayy rnslqpvtat
      601 sdsapilhrl slssagssgy yevsrsriqr rieaassttg pdlnslkrep srilnkdpst
      661 wsieevmrfv keadpqslap haelfrrhei dgkallllrs dmimkymglk lgpalklcyh
      721 ierlkqgky
//
LOCUS       XP_053912281             728 aa            linear   VRT 09-MAR-2023
DEFINITION  sex comb on midleg-like protein 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912281
VERSION     XP_053912281.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056306.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..728
                     /product="sex comb on midleg-like protein 2 isoform X2"
                     /calculated_mol_wt=80154
     Region          32..162
                     /region_name="MBT"
                     /note="malignant brain tumor (MBT) repeat; cl45897"
                     /db_xref="CDD:459242"
     Site            order(73,76,79,81,97,100,104)
                     /site_type="other"
                     /note="putative methyllysine peptide binding site
                     [polypeptide binding]"
                     /db_xref="CDD:439080"
     Region          167..243
                     /region_name="MBT_SCML2_rpt2"
                     /note="second malignant brain tumor (MBT) repeat found in
                     sex comb on midleg-like protein 2 (SCML2) and similar
                     proteins; cd20109"
                     /db_xref="CDD:439099"
     Site            order(182,185,187..188,190,206,209,213,239..241)
                     /site_type="other"
                     /note="methyllysine peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:439099"
     Region          276..>318
                     /region_name="RBR"
                     /note="RNA binding Region; pfam17208"
                     /db_xref="CDD:465382"
     Region          372..481
                     /region_name="SLED"
                     /note="SLED domain; pfam12140"
                     /db_xref="CDD:463469"
     Region          654..725
                     /region_name="SAM_Scm"
                     /note="SAM domain of Scm proteins of Polycomb group;
                     cd09578"
                     /db_xref="CDD:188977"
     Site            order(673,709..712,714..715,718,721)
                     /site_type="other"
                     /note="oligomer interface EH [polypeptide binding]"
                     /db_xref="CDD:188977"
     Site            order(686..690,692..693,696..697,700..701,703..706)
                     /site_type="other"
                     /note="oligomer interface ML [polypeptide binding]"
                     /db_xref="CDD:188977"
     CDS             1..728
                     /gene="SCML2"
                     /coded_by="XM_054056306.1:158..2344"
                     /db_xref="GeneID:104063390"
ORIGIN      
        1 mgrttakdsk nnkkekdgkn qqannpslks eqfnwddylk etesvaaplh cfrqsrippt
       61 ndfkvgmkle ardprnvtsv ciatvigitg arlrlrldgs dnkndfwrlv dssdiqpigt
      121 cekkggmlqp plgfqmnass wpmfllrtln gaemapaaff kkeppkpvpn cfkvgmklea
      181 idrknpylic patigdvkgd evfvtfdgws gafdywcrcd srdifpvgwc sltgdalqpp
      241 gsnvsitkss akiqsspskv trrsmqspqk papvpahrgr kpgrgkppgq savpkkgrsp
      301 knipltksts htenlktrkk slkpgkkkkv lpeqltpasp sphsspegds gttqilkdgv
      361 slsgataavm stvcvyvnkh gnsgphldkk kvqqlpdhfg pgpvnvvlqq avqacvdcay
      421 qsktvfgflk sghhggemit asfdgekhai nlpsvnsasf vlrfleklch slqcdnlfss
      481 qpfspymgca hspmeydrnk pakeeitdnr sakrysqdsp pytaplspkl prndahpsee
      541 tlpieensts kehrfsedsm dsalnsvnps sptrrnstey rtsesaayyr nslqpvtats
      601 dsapilhrls lssagssgyy evsrsriqrr ieaassttgp dlnslkreps rilnkdpstw
      661 sieevmrfvk eadpqslaph aelfrrheid gkallllrsd mimkymglkl gpalklcyhi
      721 erlkqgky
//
LOCUS       XP_053912282             706 aa            linear   VRT 09-MAR-2023
DEFINITION  sex comb on midleg-like protein 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912282
VERSION     XP_053912282.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056307.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..706
                     /product="sex comb on midleg-like protein 2 isoform X3"
                     /calculated_mol_wt=77671
     Region          9..139
                     /region_name="MBT"
                     /note="malignant brain tumor (MBT) repeat; cl45897"
                     /db_xref="CDD:459242"
     Site            order(50,53,56,58,74,77,81)
                     /site_type="other"
                     /note="putative methyllysine peptide binding site
                     [polypeptide binding]"
                     /db_xref="CDD:439080"
     Region          144..220
                     /region_name="MBT_SCML2_rpt2"
                     /note="second malignant brain tumor (MBT) repeat found in
                     sex comb on midleg-like protein 2 (SCML2) and similar
                     proteins; cd20109"
                     /db_xref="CDD:439099"
     Site            order(159,162,164..165,167,183,186,190,216..218)
                     /site_type="other"
                     /note="methyllysine peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:439099"
     Region          253..>295
                     /region_name="RBR"
                     /note="RNA binding Region; pfam17208"
                     /db_xref="CDD:465382"
     Region          349..458
                     /region_name="SLED"
                     /note="SLED domain; pfam12140"
                     /db_xref="CDD:463469"
     Region          632..703
                     /region_name="SAM_Scm"
                     /note="SAM domain of Scm proteins of Polycomb group;
                     cd09578"
                     /db_xref="CDD:188977"
     Site            order(651,687..690,692..693,696,699)
                     /site_type="other"
                     /note="oligomer interface EH [polypeptide binding]"
                     /db_xref="CDD:188977"
     Site            order(664..668,670..671,674..675,678..679,681..684)
                     /site_type="other"
                     /note="oligomer interface ML [polypeptide binding]"
                     /db_xref="CDD:188977"
     CDS             1..706
                     /gene="SCML2"
                     /coded_by="XM_054056307.1:158..2278"
                     /db_xref="GeneID:104063390"
ORIGIN      
        1 mgrttakeqf nwddylkete svaaplhcfr qsripptndf kvgmkleard prnvtsvcia
       61 tvigitgarl rlrldgsdnk ndfwrlvdss diqpigtcek kggmlqpplg fqmnasswpm
      121 fllrtlngae mapaaffkke ppkpvpncfk vgmkleaidr knpylicpat igdvkgdevf
      181 vtfdgwsgaf dywcrcdsrd ifpvgwcslt gdalqppgsn vsitkssaki qsspskvtrr
      241 smqspqkpap vpahrgrkpg rgkppgqsav pkkgrspkni pltkstshte nlktrkkslk
      301 pgkkkkvlpe qltpaspsph sspegdsgtt qilkdgvsls gataavmstv cvyvnkhgns
      361 gphldkkkvq qlpdhfgpgp vnvvlqqavq acvdcayqsk tvfgflksgh hggemitasf
      421 dgekhainlp svnsasfvlr fleklchslq cdnlfssqpf spymgcahsp meydrnkpak
      481 eeitdnrsak rysqdsppyt aplspklprn dahpseaetl pieenstske hrfsedsmds
      541 alnsvnpssp trrnsteyrt sesaayyrns lqpvtatsds apilhrlsls sagssgyyev
      601 srsriqrrie aassttgpdl nslkrepsri lnkdpstwsi eevmrfvkea dpqslaphae
      661 lfrrheidgk allllrsdmi mkymglklgp alklcyhier lkqgky
//
LOCUS       XP_053912284             663 aa            linear   VRT 09-MAR-2023
DEFINITION  sex comb on midleg-like protein 2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053912284
VERSION     XP_053912284.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056309.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..663
                     /product="sex comb on midleg-like protein 2 isoform X4"
                     /calculated_mol_wt=72703
     Region          1..85
                     /region_name="MBT"
                     /note="malignant brain tumor (MBT) repeat; cl45897"
                     /db_xref="CDD:459242"
     Site            order(7,10,13,15,31,34,38)
                     /site_type="other"
                     /note="putative methyllysine peptide binding site
                     [polypeptide binding]"
                     /db_xref="CDD:439080"
     Region          101..177
                     /region_name="MBT_SCML2_rpt2"
                     /note="second malignant brain tumor (MBT) repeat found in
                     sex comb on midleg-like protein 2 (SCML2) and similar
                     proteins; cd20109"
                     /db_xref="CDD:439099"
     Site            order(116,119,121..122,124,140,143,147,173..175)
                     /site_type="other"
                     /note="methyllysine peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:439099"
     Region          210..>252
                     /region_name="RBR"
                     /note="RNA binding Region; pfam17208"
                     /db_xref="CDD:465382"
     Region          306..415
                     /region_name="SLED"
                     /note="SLED domain; pfam12140"
                     /db_xref="CDD:463469"
     Region          589..660
                     /region_name="SAM_Scm"
                     /note="SAM domain of Scm proteins of Polycomb group;
                     cd09578"
                     /db_xref="CDD:188977"
     Site            order(608,644..647,649..650,653,656)
                     /site_type="other"
                     /note="oligomer interface EH [polypeptide binding]"
                     /db_xref="CDD:188977"
     Site            order(621..625,627..628,631..632,635..636,638..641)
                     /site_type="other"
                     /note="oligomer interface ML [polypeptide binding]"
                     /db_xref="CDD:188977"
     CDS             1..663
                     /gene="SCML2"
                     /coded_by="XM_054056309.1:128..2119"
                     /db_xref="GeneID:104063390"
ORIGIN      
        1 mkleardprn vtsvciatvi gitgarlrlr ldgsdnkndf wrlvdssdiq pigtcekkgg
       61 mlqpplgfqm nasswpmfll rtlngaemap aaffkkeppk pvpncfkvgm kleaidrknp
      121 ylicpatigd vkgdevfvtf dgwsgafdyw crcdsrdifp vgwcsltgda lqppgsnvsi
      181 tkssakiqss pskvtrrsmq spqkpapvpa hrgrkpgrgk ppgqsavpkk grspkniplt
      241 kstshtenlk trkkslkpgk kkkvlpeqlt paspsphssp egdsgttqil kdgvslsgat
      301 aavmstvcvy vnkhgnsgph ldkkkvqqlp dhfgpgpvnv vlqqavqacv dcayqsktvf
      361 gflksghhgg emitasfdge khainlpsvn sasfvlrfle klchslqcdn lfssqpfspy
      421 mgcahspmey drnkpakeei tdnrsakrys qdsppytapl spklprndah pseaetlpie
      481 enstskehrf sedsmdsaln svnpssptrr nsteyrtses aayyrnslqp vtatsdsapi
      541 lhrlslssag ssgyyevsrs riqrrieaas sttgpdlnsl krepsrilnk dpstwsieev
      601 mrfvkeadpq slaphaelfr rheidgkall llrsdmimky mglklgpalk lcyhierlkq
      661 gky
//
LOCUS       XP_053912285             663 aa            linear   VRT 09-MAR-2023
DEFINITION  sex comb on midleg-like protein 2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053912285
VERSION     XP_053912285.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056310.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..663
                     /product="sex comb on midleg-like protein 2 isoform X4"
                     /calculated_mol_wt=72703
     Region          1..85
                     /region_name="MBT"
                     /note="malignant brain tumor (MBT) repeat; cl45897"
                     /db_xref="CDD:459242"
     Site            order(7,10,13,15,31,34,38)
                     /site_type="other"
                     /note="putative methyllysine peptide binding site
                     [polypeptide binding]"
                     /db_xref="CDD:439080"
     Region          101..177
                     /region_name="MBT_SCML2_rpt2"
                     /note="second malignant brain tumor (MBT) repeat found in
                     sex comb on midleg-like protein 2 (SCML2) and similar
                     proteins; cd20109"
                     /db_xref="CDD:439099"
     Site            order(116,119,121..122,124,140,143,147,173..175)
                     /site_type="other"
                     /note="methyllysine peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:439099"
     Region          210..>252
                     /region_name="RBR"
                     /note="RNA binding Region; pfam17208"
                     /db_xref="CDD:465382"
     Region          306..415
                     /region_name="SLED"
                     /note="SLED domain; pfam12140"
                     /db_xref="CDD:463469"
     Region          589..660
                     /region_name="SAM_Scm"
                     /note="SAM domain of Scm proteins of Polycomb group;
                     cd09578"
                     /db_xref="CDD:188977"
     Site            order(608,644..647,649..650,653,656)
                     /site_type="other"
                     /note="oligomer interface EH [polypeptide binding]"
                     /db_xref="CDD:188977"
     Site            order(621..625,627..628,631..632,635..636,638..641)
                     /site_type="other"
                     /note="oligomer interface ML [polypeptide binding]"
                     /db_xref="CDD:188977"
     CDS             1..663
                     /gene="SCML2"
                     /coded_by="XM_054056310.1:103..2094"
                     /db_xref="GeneID:104063390"
ORIGIN      
        1 mkleardprn vtsvciatvi gitgarlrlr ldgsdnkndf wrlvdssdiq pigtcekkgg
       61 mlqpplgfqm nasswpmfll rtlngaemap aaffkkeppk pvpncfkvgm kleaidrknp
      121 ylicpatigd vkgdevfvtf dgwsgafdyw crcdsrdifp vgwcsltgda lqppgsnvsi
      181 tkssakiqss pskvtrrsmq spqkpapvpa hrgrkpgrgk ppgqsavpkk grspkniplt
      241 kstshtenlk trkkslkpgk kkkvlpeqlt paspsphssp egdsgttqil kdgvslsgat
      301 aavmstvcvy vnkhgnsgph ldkkkvqqlp dhfgpgpvnv vlqqavqacv dcayqsktvf
      361 gflksghhgg emitasfdge khainlpsvn sasfvlrfle klchslqcdn lfssqpfspy
      421 mgcahspmey drnkpakeei tdnrsakrys qdsppytapl spklprndah pseaetlpie
      481 enstskehrf sedsmdsaln svnpssptrr nsteyrtses aayyrnslqp vtatsdsapi
      541 lhrlslssag ssgyyevsrs riqrrieaas sttgpdlnsl krepsrilnk dpstwsieev
      601 mrfvkeadpq slaphaelfr rheidgkall llrsdmimky mglklgpalk lcyhierlkq
      661 gky
//
LOCUS       XP_053912286            1030 aa            linear   VRT 09-MAR-2023
DEFINITION  PDZ domain-containing RING finger protein 4 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912286
VERSION     XP_053912286.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056311.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1030
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1030
                     /product="PDZ domain-containing RING finger protein 4
                     isoform X1"
                     /calculated_mol_wt=116956
     Region          12..64
                     /region_name="RING-HC_LNX4"
                     /note="RING finger, HC subclass, found in ligand of numb
                     protein X 4 (LNX4); cd16719"
                     /db_xref="CDD:438379"
     Site            order(18,21,33,35,38,41,52,56)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:438379"
     Region          191..307
                     /region_name="PDZ1-PDZRN4-like"
                     /note="PDZ domain 1 of PDZ domain-containing RING finger
                     protein 4 (PDZRN4), PDZRN3-B, and related domains;
                     cd06715"
                     /db_xref="CDD:467199"
     Site            order(203..209,228,231,287,291,294..295)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467199"
     Region          392..480
                     /region_name="PDZ2-PDZRN4-like"
                     /note="PDZ domain 2 of PDZ domain-containing RING finger
                     protein 4 (PDZRN4), PDZRN3-B, and related domains;
                     cd06716"
                     /db_xref="CDD:467200"
     Site            order(407..413,427,430,458,462,465..466)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467200"
     CDS             1..1030
                     /gene="PDZRN4"
                     /coded_by="XM_054056311.1:81..3173"
                     /db_xref="GeneID:104062398"
ORIGIN      
        1 mgfdpsrfaa pvaaelqckl cgrvleepls tpcghvfcag cllpwasrrr rcplrcrpla
       61 aaelrpvlpl rslvqklevk cdysprgcgr tvrlrelpah laacrygpae pqppggrrcp
      121 reprpgakrd alrwsrreks llaqlsalqs evqqtarryq akfgqymshi gsvardragg
      181 qpgkakggep kpltvmlhre ndtlgfniig grpnqnnqee saegiyvski lengpadkae
      241 glqihdriie pevklrtsrv vtsssslcdt llwfpevngk dlskatheea veafrnakdp
      301 ivvqvlrrap iskahgssqd vqlvdvstqt ditfehimal aklrpstppv pdicpfllsd
      361 schslhpveh efyegneyls slpadadrae dfeyeevelc rinsqeklgl tvcyrtddee
      421 dtgiyvsevd pnsiaardgr iregdrilqi ngqdvqnree avallsseec kkivllvarp
      481 emqleegwld dernefleel nlemleeqhn eamqytanem dqpkkheeed gttdtatsss
      541 nnhekdsgvg ptdeslrnde sseqenvpee qnsatlqnkr elghsqdtlg svelqcnesf
      601 vsgeyiesdf ignpeeecer frqllelkck irnhgeydly yssstiecnr reqdgvehel
      661 qllneelrni elecqnimqa hrlqkvrdqy gdiwalhdeg frnyntsidv qrgklddime
      721 hpeksdkdss sayntaescr stpltversp dnslqrmisi tnrknlrstv vsnqsssgqn
      781 nrettlaktk pteqnsaaed tvlaaesgkf tdqekqsseh ipylspyhss syrygnipah
      841 akhyqsymql iqqksaveya qsqlslvsmc kdsqkcaepk mewkvkirsd gtryitkrpv
      901 rdrilkeral kikeersgmt tdddtmsemk mgrywskeer kqhlvrakeq rrrrefmmrs
      961 rleclkespq sgsegkkein iielshkkmm kkrnkkildn wmtiqelmth gakspdgtrv
     1021 hnaflsvttv
//
LOCUS       XP_053912287            1004 aa            linear   VRT 09-MAR-2023
DEFINITION  PDZ domain-containing RING finger protein 4 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912287
VERSION     XP_053912287.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056312.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1004
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1004
                     /product="PDZ domain-containing RING finger protein 4
                     isoform X2"
                     /calculated_mol_wt=114022
     Region          12..64
                     /region_name="RING-HC_LNX4"
                     /note="RING finger, HC subclass, found in ligand of numb
                     protein X 4 (LNX4); cd16719"
                     /db_xref="CDD:438379"
     Site            order(18,21,33,35,38,41,52,56)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:438379"
     Region          191..281
                     /region_name="PDZ1-PDZRN4-like"
                     /note="PDZ domain 1 of PDZ domain-containing RING finger
                     protein 4 (PDZRN4), PDZRN3-B, and related domains;
                     cd06715"
                     /db_xref="CDD:467199"
     Site            order(203..209,228,231,261,265,268..269)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467199"
     Region          366..454
                     /region_name="PDZ2-PDZRN4-like"
                     /note="PDZ domain 2 of PDZ domain-containing RING finger
                     protein 4 (PDZRN4), PDZRN3-B, and related domains;
                     cd06716"
                     /db_xref="CDD:467200"
     Site            order(381..387,401,404,432,436,439..440)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467200"
     CDS             1..1004
                     /gene="PDZRN4"
                     /coded_by="XM_054056312.1:81..3095"
                     /db_xref="GeneID:104062398"
ORIGIN      
        1 mgfdpsrfaa pvaaelqckl cgrvleepls tpcghvfcag cllpwasrrr rcplrcrpla
       61 aaelrpvlpl rslvqklevk cdysprgcgr tvrlrelpah laacrygpae pqppggrrcp
      121 reprpgakrd alrwsrreks llaqlsalqs evqqtarryq akfgqymshi gsvardragg
      181 qpgkakggep kpltvmlhre ndtlgfniig grpnqnnqee saegiyvski lengpadkae
      241 glqihdriie vngkdlskat heeaveafrn akdpivvqvl rrapiskahg ssqdvqlvdv
      301 stqtditfeh imalaklrps tppvpdicpf llsdschslh pvehefyegn eylsslpada
      361 draedfeyee velcrinsqe klgltvcyrt ddeedtgiyv sevdpnsiaa rdgriregdr
      421 ilqingqdvq nreeavalls seeckkivll varpemqlee gwlddernef leelnlemle
      481 eqhneamqyt anemdqpkkh eeedgttdta tsssnnhekd sgvgptdesl rndesseqen
      541 vpeeqnsatl qnkrelghsq dtlgsvelqc nesfvsgeyi esdfignpee ecerfrqlle
      601 lkckirnhge ydlyysssti ecnrreqdgv ehelqllnee lrnielecqn imqahrlqkv
      661 rdqygdiwal hdegfrnynt sidvqrgkld dimehpeksd kdsssaynta escrstpltv
      721 erspdnslqr misitnrknl rstvvsnqss sgqnnrettl aktkpteqns aaedtvlaae
      781 sgkftdqekq ssehipylsp yhsssyrygn ipahakhyqs ymqliqqksa veyaqsqlsl
      841 vsmckdsqkc aepkmewkvk irsdgtryit krpvrdrilk eralkikeer sgmttdddtm
      901 semkmgryws keerkqhlvr akeqrrrref mmrsrleclk espqsgsegk keiniielsh
      961 kkmmkkrnkk ildnwmtiqe lmthgakspd gtrvhnafls vttv
//
LOCUS       XP_053912288             969 aa            linear   VRT 09-MAR-2023
DEFINITION  PDZ domain-containing RING finger protein 4 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053912288
VERSION     XP_053912288.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056313.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..969
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..969
                     /product="PDZ domain-containing RING finger protein 4
                     isoform X3"
                     /calculated_mol_wt=110159
     Region          12..64
                     /region_name="RING-HC_LNX4"
                     /note="RING finger, HC subclass, found in ligand of numb
                     protein X 4 (LNX4); cd16719"
                     /db_xref="CDD:438379"
     Site            order(18,21,33,35,38,41,52,56)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:438379"
     Region          191..246
                     /region_name="PDZ_canonical"
                     /note="canonical PDZ domain; cl49608"
                     /db_xref="CDD:483948"
     Site            order(203..209,226,230,233..234)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467199"
     Region          331..419
                     /region_name="PDZ2-PDZRN4-like"
                     /note="PDZ domain 2 of PDZ domain-containing RING finger
                     protein 4 (PDZRN4), PDZRN3-B, and related domains;
                     cd06716"
                     /db_xref="CDD:467200"
     Site            order(346..352,366,369,397,401,404..405)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467200"
     CDS             1..969
                     /gene="PDZRN4"
                     /coded_by="XM_054056313.1:81..2990"
                     /db_xref="GeneID:104062398"
ORIGIN      
        1 mgfdpsrfaa pvaaelqckl cgrvleepls tpcghvfcag cllpwasrrr rcplrcrpla
       61 aaelrpvlpl rslvqklevk cdysprgcgr tvrlrelpah laacrygpae pqppggrrcp
      121 reprpgakrd alrwsrreks llaqlsalqs evqqtarryq akfgqymshi gsvardragg
      181 qpgkakggep kpltvmlhre ndtlgfniig grpnqvngkd lskatheeav eafrnakdpi
      241 vvqvlrrapi skahgssqdv qlvdvstqtd itfehimala klrpstppvp dicpfllsds
      301 chslhpvehe fyegneylss lpadadraed feyeevelcr insqeklglt vcyrtddeed
      361 tgiyvsevdp nsiaardgri regdrilqin gqdvqnreea vallsseeck kivllvarpe
      421 mqleegwldd ernefleeln lemleeqhne amqytanemd qpkkheeedg ttdtatsssn
      481 nhekdsgvgp tdeslrndes seqenvpeeq nsatlqnkre lghsqdtlgs velqcnesfv
      541 sgeyiesdfi gnpeeecerf rqllelkcki rnhgeydlyy ssstiecnrr eqdgvehelq
      601 llneelrnie lecqnimqah rlqkvrdqyg diwalhdegf rnyntsidvq rgklddimeh
      661 peksdkdsss ayntaescrs tpltverspd nslqrmisit nrknlrstvv snqsssgqnn
      721 rettlaktkp teqnsaaedt vlaaesgkft dqekqssehi pylspyhsss yrygnipaha
      781 khyqsymqli qqksaveyaq sqlslvsmck dsqkcaepkm ewkvkirsdg tryitkrpvr
      841 drilkeralk ikeersgmtt dddtmsemkm grywskeerk qhlvrakeqr rrrefmmrsr
      901 leclkespqs gsegkkeini ielshkkmmk krnkkildnw mtiqelmthg akspdgtrvh
      961 naflsvttv
//
LOCUS       XP_053912290             768 aa            linear   VRT 09-MAR-2023
DEFINITION  PDZ domain-containing RING finger protein 4 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053912290
VERSION     XP_053912290.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056315.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..768
                     /product="PDZ domain-containing RING finger protein 4
                     isoform X4"
                     /calculated_mol_wt=88053
     Region          <12..45
                     /region_name="PDZ_canonical"
                     /note="canonical PDZ domain; cl49608"
                     /db_xref="CDD:483948"
     Region          130..218
                     /region_name="PDZ2-PDZRN4-like"
                     /note="PDZ domain 2 of PDZ domain-containing RING finger
                     protein 4 (PDZRN4), PDZRN3-B, and related domains;
                     cd06716"
                     /db_xref="CDD:467200"
     Site            order(145..151,165,168,196,200,203..204)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467200"
     CDS             1..768
                     /gene="PDZRN4"
                     /coded_by="XM_054056315.1:16..2322"
                     /db_xref="GeneID:104062398"
ORIGIN      
        1 msflripeln tvlqvngkdl skatheeave afrnakdpiv vqvlrrapis kahgssqdvq
       61 lvdvstqtdi tfehimalak lrpstppvpd icpfllsdsc hslhpvehef yegneylssl
      121 padadraedf eyeevelcri nsqeklgltv cyrtddeedt giyvsevdpn siaardgrir
      181 egdrilqing qdvqnreeav allsseeckk ivllvarpem qleegwldde rnefleelnl
      241 emleeqhnea mqytanemdq pkkheeedgt tdtatsssnn hekdsgvgpt deslrndess
      301 eqenvpeeqn satlqnkrel ghsqdtlgsv elqcnesfvs geyiesdfig npeeecerfr
      361 qllelkckir nhgeydlyys sstiecnrre qdgvehelql lneelrniel ecqnimqahr
      421 lqkvrdqygd iwalhdegfr nyntsidvqr gklddimehp eksdkdsssa yntaescrst
      481 pltverspdn slqrmisitn rknlrstvvs nqsssgqnnr ettlaktkpt eqnsaaedtv
      541 laaesgkftd qekqssehip ylspyhsssy rygnipahak hyqsymqliq qksaveyaqs
      601 qlslvsmckd sqkcaepkme wkvkirsdgt ryitkrpvrd rilkeralki keersgmttd
      661 ddtmsemkmg rywskeerkq hlvrakeqrr rrefmmrsrl eclkespqsg segkkeinii
      721 elshkkmmkk rnkkildnwm tiqelmthga kspdgtrvhn aflsvttv
//
LOCUS       XP_009562744             777 aa            linear   VRT 09-MAR-2023
DEFINITION  PDZ domain-containing RING finger protein 4 isoform X5 [Cuculus
            canorus].
ACCESSION   XP_009562744
VERSION     XP_009562744.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009564449.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..777
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..777
                     /product="PDZ domain-containing RING finger protein 4
                     isoform X5"
                     /calculated_mol_wt=89212
     Region          <23..54
                     /region_name="PDZ_canonical"
                     /note="canonical PDZ domain; cl49608"
                     /db_xref="CDD:483948"
     Region          139..227
                     /region_name="PDZ2-PDZRN4-like"
                     /note="PDZ domain 2 of PDZ domain-containing RING finger
                     protein 4 (PDZRN4), PDZRN3-B, and related domains;
                     cd06716"
                     /db_xref="CDD:467200"
     Site            order(154..160,174,177,205,209,212..213)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467200"
     CDS             1..777
                     /gene="PDZRN4"
                     /coded_by="XM_009564449.2:230..2563"
                     /db_xref="GeneID:104062398"
ORIGIN      
        1 mgcnlctfqk reehykllye vsqvngkdls katheeavea frnakdpivv qvlrrapisk
       61 ahgssqdvql vdvstqtdit fehimalakl rpstppvpdi cpfllsdsch slhpvehefy
      121 egneylsslp adadraedfe yeevelcrin sqeklgltvc yrtddeedtg iyvsevdpns
      181 iaardgrire gdrilqingq dvqnreeava llsseeckki vllvarpemq leegwldder
      241 nefleelnle mleeqhneam qytanemdqp kkheeedgtt dtatsssnnh ekdsgvgptd
      301 eslrndesse qenvpeeqns atlqnkrelg hsqdtlgsve lqcnesfvsg eyiesdfign
      361 peeecerfrq llelkckirn hgeydlyyss stiecnrreq dgvehelqll neelrniele
      421 cqnimqahrl qkvrdqygdi walhdegfrn yntsidvqrg klddimehpe ksdkdsssay
      481 ntaescrstp ltverspdns lqrmisitnr knlrstvvsn qsssgqnnre ttlaktkpte
      541 qnsaaedtvl aaesgkftdq ekqssehipy lspyhsssyr ygnipahakh yqsymqliqq
      601 ksaveyaqsq lslvsmckds qkcaepkmew kvkirsdgtr yitkrpvrdr ilkeralkik
      661 eersgmttdd dtmsemkmgr ywskeerkqh lvrakeqrrr refmmrsrle clkespqsgs
      721 egkkeiniie lshkkmmkkr nkkildnwmt iqelmthgak spdgtrvhna flsvttv
//
LOCUS       XP_053912291             766 aa            linear   VRT 09-MAR-2023
DEFINITION  PDZ domain-containing RING finger protein 4 isoform X6 [Cuculus
            canorus].
ACCESSION   XP_053912291
VERSION     XP_053912291.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056316.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..766
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..766
                     /product="PDZ domain-containing RING finger protein 4
                     isoform X6"
                     /calculated_mol_wt=87782
     Region          <13..43
                     /region_name="PDZ_canonical"
                     /note="canonical PDZ domain; cl49608"
                     /db_xref="CDD:483948"
     Region          128..216
                     /region_name="PDZ2-PDZRN4-like"
                     /note="PDZ domain 2 of PDZ domain-containing RING finger
                     protein 4 (PDZRN4), PDZRN3-B, and related domains;
                     cd06716"
                     /db_xref="CDD:467200"
     Site            order(143..149,163,166,194,198,201..202)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467200"
     CDS             1..766
                     /gene="PDZRN4"
                     /coded_by="XM_054056316.1:13..2313"
                     /db_xref="GeneID:104062398"
ORIGIN      
        1 mmrtksgtgh krvngkdlsk atheeaveaf rnakdpivvq vlrrapiska hgssqdvqlv
       61 dvstqtditf ehimalaklr pstppvpdic pfllsdschs lhpvehefye gneylsslpa
      121 dadraedfey eevelcrins qeklgltvcy rtddeedtgi yvsevdpnsi aardgrireg
      181 drilqingqd vqnreeaval lsseeckkiv llvarpemql eegwlddern efleelnlem
      241 leeqhneamq ytanemdqpk kheeedgttd tatsssnnhe kdsgvgptde slrndesseq
      301 envpeeqnsa tlqnkrelgh sqdtlgsvel qcnesfvsge yiesdfignp eeecerfrql
      361 lelkckirnh geydlyysss tiecnrreqd gvehelqlln eelrnielec qnimqahrlq
      421 kvrdqygdiw alhdegfrny ntsidvqrgk lddimehpek sdkdsssayn taescrstpl
      481 tverspdnsl qrmisitnrk nlrstvvsnq sssgqnnret tlaktkpteq nsaaedtvla
      541 aesgkftdqe kqssehipyl spyhsssyry gnipahakhy qsymqliqqk saveyaqsql
      601 slvsmckdsq kcaepkmewk vkirsdgtry itkrpvrdri lkeralkike ersgmttddd
      661 tmsemkmgry wskeerkqhl vrakeqrrrr efmmrsrlec lkespqsgse gkkeiniiel
      721 shkkmmkkrn kkildnwmti qelmthgaks pdgtrvhnaf lsvttv
//
LOCUS       XP_009567048             352 aa            linear   VRT 09-MAR-2023
DEFINITION  motilin receptor [Cuculus canorus].
ACCESSION   XP_009567048
VERSION     XP_009567048.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568753.2
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567048.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..352
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..352
                     /product="motilin receptor"
                     /calculated_mol_wt=39389
     Region          33..319
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          35..59
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          68..89
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          106..128
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          151..167
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          198..221
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          250..272
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          287..312
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..352
                     /gene="MLNR"
                     /coded_by="XM_009568753.2:1..1059"
                     /db_xref="GeneID:104066183"
ORIGIN      
        1 mgvvagndsq gepwpwpprd erlclalplr vlvpvtvmcv glfivgvvgn altvlvirgy
       61 hdtrstssly lgsmavsdll illglpfdly hlwcsrpwif gqlpcclshy lsegctycti
      121 lhitartver ylaicfplka kviitkcrvk vvigtlwaft afsaspfffl vgvqqtdnht
      181 dfsgeckptp qavesgllam mfwvttsyfi lpvlclnvly sliawelcrs kaplrgpsvv
      241 lrekghhqti kilvvvvlaf iicwlpfhig rivfintqst rmmlfsqyfn ifalqlfyls
      301 asinpilynl iskkyraaay kllfphraae raftvnkdag gytetsastr ne
//
LOCUS       XP_009555286             406 aa            linear   VRT 09-MAR-2023
DEFINITION  calsequestrin-2 [Cuculus canorus].
ACCESSION   XP_009555286
VERSION     XP_009555286.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556991.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..406
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..406
                     /product="calsequestrin-2"
                     /calculated_mol_wt=47085
     Region          22..371
                     /region_name="Calsequestrin"
                     /note="pfam01216"
                     /db_xref="CDD:395972"
     CDS             1..406
                     /gene="CASQ2"
                     /coded_by="XM_009556991.2:246..1466"
                     /db_xref="GeneID:104055810"
ORIGIN      
        1 mkvtcwilag fyllfcckae eglnfptydg kdrvidlnek nykqalkkyd mlcllfhepv
       61 ssdkvsqkqf qmtemvlela aqvleprsig fgmvdskkda klakklglve egslyvfkee
      121 rliefdgels advlveflld lledpveiln nklelqafde iddeikligy fkgedsehyk
      181 afeeaaehfq pyikffatfd kgvakklglk mnevdfyepf mdepvhipdk pyteeelvef
      241 vnehkratlr klrpedmfet weddmdgihi vafaeeddpd gfefleilkq vardntdnpd
      301 lsivwidpdd fpllitywek tfkidlfrpq igvvnvtdad siwmeirddd dlptaeeled
      361 wiedvlsgki nteddddddd dddddddddd dddddddddd dddddd
//
LOCUS       XP_053912292             357 aa            linear   VRT 09-MAR-2023
DEFINITION  P2Y purinoceptor 8 [Cuculus canorus].
ACCESSION   XP_053912292
VERSION     XP_053912292.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056317.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..357
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..357
                     /product="P2Y purinoceptor 8"
                     /calculated_mol_wt=41114
     Region          23..303
                     /region_name="7tmA_P2Y8"
                     /note="purinergic receptor P2Y8, member of the class A
                     family of seven-transmembrane G protein-coupled receptors;
                     cd15368"
                     /db_xref="CDD:320490"
     Region          23..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320490"
     Region          57..82
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320490"
     Site            order(78,81..82,88,95..100,102..103,106,151,153..157,
                     174..176,189,192..194,196..198,200..201,249,252..253,
                     255..256,259,270..271,273..275,278,281..282)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:320490"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320490"
     Region          137..159
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320490"
     Region          189..218
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320490"
     Region          229..259
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320490"
     Region          271..296
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320490"
     CDS             1..357
                     /gene="P2RY8"
                     /coded_by="XM_054056317.1:251..1324"
                     /db_xref="GeneID:104063721"
ORIGIN      
        1 mvkngsqlda etlamlqnka isitlpvvyt lvamisipgn lfslwvlcwh ikpktpsvif
       61 minlsitdlm lascfpfqis yhiqsnhwsf gktlcslvtv mfysnmyssi ltmtcisier
      121 ymgvvypmkl mkwrrkryal aaclgmwill llafyplest dltyeveqlg iitcfdvlkw
      181 dmlpnfaawv aflltlfvvl flipfvvtvg cyigiirkli qtsnrygnkq knrsiylami
      241 vllvfvtcfa pnnfillvhm iirlfydrsl ypaykltlcl sclnncidpf iyyfaskefy
      301 qkfmqvfrpk vllsdslenr reslfsgrtm sarsmssgpm eglegvkvyl qrqesvf
//
LOCUS       XP_053912293             357 aa            linear   VRT 09-MAR-2023
DEFINITION  P2Y purinoceptor 8 [Cuculus canorus].
ACCESSION   XP_053912293
VERSION     XP_053912293.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056318.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..357
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..357
                     /product="P2Y purinoceptor 8"
                     /calculated_mol_wt=41114
     Region          23..303
                     /region_name="7tmA_P2Y8"
                     /note="purinergic receptor P2Y8, member of the class A
                     family of seven-transmembrane G protein-coupled receptors;
                     cd15368"
                     /db_xref="CDD:320490"
     Region          23..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320490"
     Region          57..82
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320490"
     Site            order(78,81..82,88,95..100,102..103,106,151,153..157,
                     174..176,189,192..194,196..198,200..201,249,252..253,
                     255..256,259,270..271,273..275,278,281..282)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:320490"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320490"
     Region          137..159
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320490"
     Region          189..218
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320490"
     Region          229..259
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320490"
     Region          271..296
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320490"
     CDS             1..357
                     /gene="P2RY8"
                     /coded_by="XM_054056318.1:409..1482"
                     /db_xref="GeneID:104063721"
ORIGIN      
        1 mvkngsqlda etlamlqnka isitlpvvyt lvamisipgn lfslwvlcwh ikpktpsvif
       61 minlsitdlm lascfpfqis yhiqsnhwsf gktlcslvtv mfysnmyssi ltmtcisier
      121 ymgvvypmkl mkwrrkryal aaclgmwill llafyplest dltyeveqlg iitcfdvlkw
      181 dmlpnfaawv aflltlfvvl flipfvvtvg cyigiirkli qtsnrygnkq knrsiylami
      241 vllvfvtcfa pnnfillvhm iirlfydrsl ypaykltlcl sclnncidpf iyyfaskefy
      301 qkfmqvfrpk vllsdslenr reslfsgrtm sarsmssgpm eglegvkvyl qrqesvf
//
LOCUS       XP_053912294             357 aa            linear   VRT 09-MAR-2023
DEFINITION  P2Y purinoceptor 8 [Cuculus canorus].
ACCESSION   XP_053912294
VERSION     XP_053912294.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056319.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..357
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..357
                     /product="P2Y purinoceptor 8"
                     /calculated_mol_wt=41114
     Region          23..303
                     /region_name="7tmA_P2Y8"
                     /note="purinergic receptor P2Y8, member of the class A
                     family of seven-transmembrane G protein-coupled receptors;
                     cd15368"
                     /db_xref="CDD:320490"
     Region          23..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320490"
     Region          57..82
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320490"
     Site            order(78,81..82,88,95..100,102..103,106,151,153..157,
                     174..176,189,192..194,196..198,200..201,249,252..253,
                     255..256,259,270..271,273..275,278,281..282)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:320490"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320490"
     Region          137..159
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320490"
     Region          189..218
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320490"
     Region          229..259
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320490"
     Region          271..296
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320490"
     CDS             1..357
                     /gene="P2RY8"
                     /coded_by="XM_054056319.1:345..1418"
                     /db_xref="GeneID:104063721"
ORIGIN      
        1 mvkngsqlda etlamlqnka isitlpvvyt lvamisipgn lfslwvlcwh ikpktpsvif
       61 minlsitdlm lascfpfqis yhiqsnhwsf gktlcslvtv mfysnmyssi ltmtcisier
      121 ymgvvypmkl mkwrrkryal aaclgmwill llafyplest dltyeveqlg iitcfdvlkw
      181 dmlpnfaawv aflltlfvvl flipfvvtvg cyigiirkli qtsnrygnkq knrsiylami
      241 vllvfvtcfa pnnfillvhm iirlfydrsl ypaykltlcl sclnncidpf iyyfaskefy
      301 qkfmqvfrpk vllsdslenr reslfsgrtm sarsmssgpm eglegvkvyl qrqesvf
//
LOCUS       XP_053912296             357 aa            linear   VRT 09-MAR-2023
DEFINITION  P2Y purinoceptor 8 [Cuculus canorus].
ACCESSION   XP_053912296
VERSION     XP_053912296.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056321.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..357
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..357
                     /product="P2Y purinoceptor 8"
                     /calculated_mol_wt=41114
     Region          23..303
                     /region_name="7tmA_P2Y8"
                     /note="purinergic receptor P2Y8, member of the class A
                     family of seven-transmembrane G protein-coupled receptors;
                     cd15368"
                     /db_xref="CDD:320490"
     Region          23..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320490"
     Region          57..82
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320490"
     Site            order(78,81..82,88,95..100,102..103,106,151,153..157,
                     174..176,189,192..194,196..198,200..201,249,252..253,
                     255..256,259,270..271,273..275,278,281..282)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:320490"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320490"
     Region          137..159
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320490"
     Region          189..218
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320490"
     Region          229..259
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320490"
     Region          271..296
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320490"
     CDS             1..357
                     /gene="P2RY8"
                     /coded_by="XM_054056321.1:177..1250"
                     /db_xref="GeneID:104063721"
ORIGIN      
        1 mvkngsqlda etlamlqnka isitlpvvyt lvamisipgn lfslwvlcwh ikpktpsvif
       61 minlsitdlm lascfpfqis yhiqsnhwsf gktlcslvtv mfysnmyssi ltmtcisier
      121 ymgvvypmkl mkwrrkryal aaclgmwill llafyplest dltyeveqlg iitcfdvlkw
      181 dmlpnfaawv aflltlfvvl flipfvvtvg cyigiirkli qtsnrygnkq knrsiylami
      241 vllvfvtcfa pnnfillvhm iirlfydrsl ypaykltlcl sclnncidpf iyyfaskefy
      301 qkfmqvfrpk vllsdslenr reslfsgrtm sarsmssgpm eglegvkvyl qrqesvf
//
LOCUS       XP_053912297             585 aa            linear   VRT 09-MAR-2023
DEFINITION  T-cell surface protein tactile isoform X1 [Cuculus canorus].
ACCESSION   XP_053912297
VERSION     XP_053912297.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056322.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..585
                     /product="T-cell surface protein tactile isoform X1"
                     /calculated_mol_wt=65485
     Region          40..173
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          55..59
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409383"
     Region          71..75
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409383"
     Region          120..142
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409383"
     Region          152..157
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409383"
     Region          166..169
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409383"
     CDS             1..585
                     /gene="CD96"
                     /coded_by="XM_054056322.1:272..2029"
                     /db_xref="GeneID:104056001"
ORIGIN      
        1 mqcsttyteg psmirnnikw eerttetgdw nsrqgqtedi itetevvhal pgtdvtlvcs
       61 fpkphttyii qtqwsktddn hlntiavyhp gygihystfp easynfsvsf smrkccgwda
      121 tealcspdqn itsecnqwal hlknitvsls gqyecsfvty pygtkaakiq liikeeeeqy
      181 yvkevrlnqt leiscfedta senvsnyplr wlvggngrke elvtkepscp avyrnssmly
      241 gqkvhlglnh tlqifptkit ddgrvfschv lyhperiqks sttvrvfayp eisvslqegs
      301 agtsqkpnvs civrkafpkp slvwyvdrvs lteqpgeisv eqedmqdseg fyqlrstlml
      361 qgthqthktf lcaclfsflg netrnissee ifvffdnrsn kasseafttm psedlgnsal
      421 psavmttseh rltslesldf tsqaslasas ttqealista etksytittt fneslttegn
      481 lsfsitdqpi svprgkdfft tsnlinstgs trnttasrfp wptvvailll fcslliavgi
      541 rkwcqyqkei mnrppsfkpp pppikytsmv esdgtppsch elenl
//
LOCUS       XP_053912298             585 aa            linear   VRT 09-MAR-2023
DEFINITION  T-cell surface protein tactile isoform X1 [Cuculus canorus].
ACCESSION   XP_053912298
VERSION     XP_053912298.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056323.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..585
                     /product="T-cell surface protein tactile isoform X1"
                     /calculated_mol_wt=65485
     Region          40..173
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          55..59
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409383"
     Region          71..75
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409383"
     Region          120..142
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409383"
     Region          152..157
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409383"
     Region          166..169
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409383"
     CDS             1..585
                     /gene="CD96"
                     /coded_by="XM_054056323.1:256..2013"
                     /db_xref="GeneID:104056001"
ORIGIN      
        1 mqcsttyteg psmirnnikw eerttetgdw nsrqgqtedi itetevvhal pgtdvtlvcs
       61 fpkphttyii qtqwsktddn hlntiavyhp gygihystfp easynfsvsf smrkccgwda
      121 tealcspdqn itsecnqwal hlknitvsls gqyecsfvty pygtkaakiq liikeeeeqy
      181 yvkevrlnqt leiscfedta senvsnyplr wlvggngrke elvtkepscp avyrnssmly
      241 gqkvhlglnh tlqifptkit ddgrvfschv lyhperiqks sttvrvfayp eisvslqegs
      301 agtsqkpnvs civrkafpkp slvwyvdrvs lteqpgeisv eqedmqdseg fyqlrstlml
      361 qgthqthktf lcaclfsflg netrnissee ifvffdnrsn kasseafttm psedlgnsal
      421 psavmttseh rltslesldf tsqaslasas ttqealista etksytittt fneslttegn
      481 lsfsitdqpi svprgkdfft tsnlinstgs trnttasrfp wptvvailll fcslliavgi
      541 rkwcqyqkei mnrppsfkpp pppikytsmv esdgtppsch elenl
//
LOCUS       XP_053912299             585 aa            linear   VRT 09-MAR-2023
DEFINITION  T-cell surface protein tactile isoform X1 [Cuculus canorus].
ACCESSION   XP_053912299
VERSION     XP_053912299.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056324.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..585
                     /product="T-cell surface protein tactile isoform X1"
                     /calculated_mol_wt=65485
     Region          40..173
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          55..59
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409383"
     Region          71..75
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409383"
     Region          120..142
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409383"
     Region          152..157
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409383"
     Region          166..169
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409383"
     CDS             1..585
                     /gene="CD96"
                     /coded_by="XM_054056324.1:150..1907"
                     /db_xref="GeneID:104056001"
ORIGIN      
        1 mqcsttyteg psmirnnikw eerttetgdw nsrqgqtedi itetevvhal pgtdvtlvcs
       61 fpkphttyii qtqwsktddn hlntiavyhp gygihystfp easynfsvsf smrkccgwda
      121 tealcspdqn itsecnqwal hlknitvsls gqyecsfvty pygtkaakiq liikeeeeqy
      181 yvkevrlnqt leiscfedta senvsnyplr wlvggngrke elvtkepscp avyrnssmly
      241 gqkvhlglnh tlqifptkit ddgrvfschv lyhperiqks sttvrvfayp eisvslqegs
      301 agtsqkpnvs civrkafpkp slvwyvdrvs lteqpgeisv eqedmqdseg fyqlrstlml
      361 qgthqthktf lcaclfsflg netrnissee ifvffdnrsn kasseafttm psedlgnsal
      421 psavmttseh rltslesldf tsqaslasas ttqealista etksytittt fneslttegn
      481 lsfsitdqpi svprgkdfft tsnlinstgs trnttasrfp wptvvailll fcslliavgi
      541 rkwcqyqkei mnrppsfkpp pppikytsmv esdgtppsch elenl
//
LOCUS       XP_053912300             585 aa            linear   VRT 09-MAR-2023
DEFINITION  T-cell surface protein tactile isoform X1 [Cuculus canorus].
ACCESSION   XP_053912300
VERSION     XP_053912300.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056325.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..585
                     /product="T-cell surface protein tactile isoform X1"
                     /calculated_mol_wt=65485
     Region          40..173
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          55..59
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409383"
     Region          71..75
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409383"
     Region          120..142
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409383"
     Region          152..157
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409383"
     Region          166..169
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409383"
     CDS             1..585
                     /gene="CD96"
                     /coded_by="XM_054056325.1:37..1794"
                     /db_xref="GeneID:104056001"
ORIGIN      
        1 mqcsttyteg psmirnnikw eerttetgdw nsrqgqtedi itetevvhal pgtdvtlvcs
       61 fpkphttyii qtqwsktddn hlntiavyhp gygihystfp easynfsvsf smrkccgwda
      121 tealcspdqn itsecnqwal hlknitvsls gqyecsfvty pygtkaakiq liikeeeeqy
      181 yvkevrlnqt leiscfedta senvsnyplr wlvggngrke elvtkepscp avyrnssmly
      241 gqkvhlglnh tlqifptkit ddgrvfschv lyhperiqks sttvrvfayp eisvslqegs
      301 agtsqkpnvs civrkafpkp slvwyvdrvs lteqpgeisv eqedmqdseg fyqlrstlml
      361 qgthqthktf lcaclfsflg netrnissee ifvffdnrsn kasseafttm psedlgnsal
      421 psavmttseh rltslesldf tsqaslasas ttqealista etksytittt fneslttegn
      481 lsfsitdqpi svprgkdfft tsnlinstgs trnttasrfp wptvvailll fcslliavgi
      541 rkwcqyqkei mnrppsfkpp pppikytsmv esdgtppsch elenl
//
LOCUS       XP_053912301             570 aa            linear   VRT 09-MAR-2023
DEFINITION  T-cell surface protein tactile isoform X2 [Cuculus canorus].
ACCESSION   XP_053912301
VERSION     XP_053912301.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056326.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..570
                     /product="T-cell surface protein tactile isoform X2"
                     /calculated_mol_wt=63710
     Region          25..158
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          40..44
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409383"
     Region          56..60
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409383"
     Region          105..127
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409383"
     Region          137..142
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409383"
     Region          151..154
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409383"
     CDS             1..570
                     /gene="CD96"
                     /coded_by="XM_054056326.1:557..2269"
                     /db_xref="GeneID:104056001"
ORIGIN      
        1 mekrwffslf cllslpstag qtediitete vvhalpgtdv tlvcsfpkph ttyiiqtqws
       61 ktddnhlnti avyhpgygih ystfpeasyn fsvsfsmrkc cgwdatealc spdqnitsec
      121 nqwalhlkni tvslsgqyec sfvtypygtk aakiqliike eeeqyyvkev rlnqtleisc
      181 fedtasenvs nyplrwlvgg ngrkeelvtk epscpavyrn ssmlygqkvh lglnhtlqif
      241 ptkitddgrv fschvlyhpe riqkssttvr vfaypeisvs lqegsagtsq kpnvscivrk
      301 afpkpslvwy vdrvslteqp geisveqedm qdsegfyqlr stlmlqgthq thktflcacl
      361 fsflgnetrn isseeifvff dnrsnkasse afttmpsedl gnsalpsavm ttsehrltsl
      421 esldftsqas lasasttqea listaetksy titttfnesl ttegnlsfsi tdqpisvprg
      481 kdffttsnli nstgstrntt asrfpwptvv ailllfcsll iavgirkwcq yqkeimnrpp
      541 sfkpppppik ytsmvesdgt ppschelenl
//
LOCUS       XP_053912302             570 aa            linear   VRT 09-MAR-2023
DEFINITION  T-cell surface protein tactile isoform X2 [Cuculus canorus].
ACCESSION   XP_053912302
VERSION     XP_053912302.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056327.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..570
                     /product="T-cell surface protein tactile isoform X2"
                     /calculated_mol_wt=63710
     Region          25..158
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          40..44
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409383"
     Region          56..60
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409383"
     Region          105..127
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409383"
     Region          137..142
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409383"
     Region          151..154
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409383"
     CDS             1..570
                     /gene="CD96"
                     /coded_by="XM_054056327.1:554..2266"
                     /db_xref="GeneID:104056001"
ORIGIN      
        1 mekrwffslf cllslpstag qtediitete vvhalpgtdv tlvcsfpkph ttyiiqtqws
       61 ktddnhlnti avyhpgygih ystfpeasyn fsvsfsmrkc cgwdatealc spdqnitsec
      121 nqwalhlkni tvslsgqyec sfvtypygtk aakiqliike eeeqyyvkev rlnqtleisc
      181 fedtasenvs nyplrwlvgg ngrkeelvtk epscpavyrn ssmlygqkvh lglnhtlqif
      241 ptkitddgrv fschvlyhpe riqkssttvr vfaypeisvs lqegsagtsq kpnvscivrk
      301 afpkpslvwy vdrvslteqp geisveqedm qdsegfyqlr stlmlqgthq thktflcacl
      361 fsflgnetrn isseeifvff dnrsnkasse afttmpsedl gnsalpsavm ttsehrltsl
      421 esldftsqas lasasttqea listaetksy titttfnesl ttegnlsfsi tdqpisvprg
      481 kdffttsnli nstgstrntt asrfpwptvv ailllfcsll iavgirkwcq yqkeimnrpp
      541 sfkpppppik ytsmvesdgt ppschelenl
//
LOCUS       XP_053912303             570 aa            linear   VRT 09-MAR-2023
DEFINITION  T-cell surface protein tactile isoform X2 [Cuculus canorus].
ACCESSION   XP_053912303
VERSION     XP_053912303.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056328.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..570
                     /product="T-cell surface protein tactile isoform X2"
                     /calculated_mol_wt=63710
     Region          25..158
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          40..44
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409383"
     Region          56..60
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409383"
     Region          105..127
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409383"
     Region          137..142
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409383"
     Region          151..154
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409383"
     CDS             1..570
                     /gene="CD96"
                     /coded_by="XM_054056328.1:199..1911"
                     /db_xref="GeneID:104056001"
ORIGIN      
        1 mekrwffslf cllslpstag qtediitete vvhalpgtdv tlvcsfpkph ttyiiqtqws
       61 ktddnhlnti avyhpgygih ystfpeasyn fsvsfsmrkc cgwdatealc spdqnitsec
      121 nqwalhlkni tvslsgqyec sfvtypygtk aakiqliike eeeqyyvkev rlnqtleisc
      181 fedtasenvs nyplrwlvgg ngrkeelvtk epscpavyrn ssmlygqkvh lglnhtlqif
      241 ptkitddgrv fschvlyhpe riqkssttvr vfaypeisvs lqegsagtsq kpnvscivrk
      301 afpkpslvwy vdrvslteqp geisveqedm qdsegfyqlr stlmlqgthq thktflcacl
      361 fsflgnetrn isseeifvff dnrsnkasse afttmpsedl gnsalpsavm ttsehrltsl
      421 esldftsqas lasasttqea listaetksy titttfnesl ttegnlsfsi tdqpisvprg
      481 kdffttsnli nstgstrntt asrfpwptvv ailllfcsll iavgirkwcq yqkeimnrpp
      541 sfkpppppik ytsmvesdgt ppschelenl
//
LOCUS       XP_053912305             570 aa            linear   VRT 09-MAR-2023
DEFINITION  T-cell surface protein tactile isoform X2 [Cuculus canorus].
ACCESSION   XP_053912305
VERSION     XP_053912305.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056330.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..570
                     /product="T-cell surface protein tactile isoform X2"
                     /calculated_mol_wt=63710
     Region          25..158
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          40..44
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409383"
     Region          56..60
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409383"
     Region          105..127
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409383"
     Region          137..142
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409383"
     Region          151..154
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409383"
     CDS             1..570
                     /gene="CD96"
                     /coded_by="XM_054056330.1:432..2144"
                     /db_xref="GeneID:104056001"
ORIGIN      
        1 mekrwffslf cllslpstag qtediitete vvhalpgtdv tlvcsfpkph ttyiiqtqws
       61 ktddnhlnti avyhpgygih ystfpeasyn fsvsfsmrkc cgwdatealc spdqnitsec
      121 nqwalhlkni tvslsgqyec sfvtypygtk aakiqliike eeeqyyvkev rlnqtleisc
      181 fedtasenvs nyplrwlvgg ngrkeelvtk epscpavyrn ssmlygqkvh lglnhtlqif
      241 ptkitddgrv fschvlyhpe riqkssttvr vfaypeisvs lqegsagtsq kpnvscivrk
      301 afpkpslvwy vdrvslteqp geisveqedm qdsegfyqlr stlmlqgthq thktflcacl
      361 fsflgnetrn isseeifvff dnrsnkasse afttmpsedl gnsalpsavm ttsehrltsl
      421 esldftsqas lasasttqea listaetksy titttfnesl ttegnlsfsi tdqpisvprg
      481 kdffttsnli nstgstrntt asrfpwptvv ailllfcsll iavgirkwcq yqkeimnrpp
      541 sfkpppppik ytsmvesdgt ppschelenl
//
LOCUS       XP_053912306             529 aa            linear   VRT 09-MAR-2023
DEFINITION  T-cell surface protein tactile isoform X3 [Cuculus canorus].
ACCESSION   XP_053912306
VERSION     XP_053912306.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056331.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..529
                     /product="T-cell surface protein tactile isoform X3"
                     /calculated_mol_wt=59138
     Region          <84..117
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          96..101
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409383"
     Region          110..113
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409383"
     CDS             1..529
                     /gene="CD96"
                     /coded_by="XM_054056331.1:272..1861"
                     /db_xref="GeneID:104056001"
ORIGIN      
        1 mqcsttyteg psmirnnikw eerttetgdw nsrqgqtedi itetevvhal pvsfsmrkcc
       61 gwdatealcs pdqnitsecn qwalhlknit vslsgqyecs fvtypygtka akiqliikee
      121 eeqyyvkevr lnqtleiscf edtasenvsn yplrwlvggn grkeelvtke pscpavyrns
      181 smlygqkvhl glnhtlqifp tkitddgrvf schvlyhper iqkssttvrv faypeisvsl
      241 qegsagtsqk pnvscivrka fpkpslvwyv drvslteqpg eisveqedmq dsegfyqlrs
      301 tlmlqgthqt hktflcaclf sflgnetrni sseeifvffd nrsnkassea fttmpsedlg
      361 nsalpsavmt tsehrltsle sldftsqasl asasttqeal istaetksyt itttfneslt
      421 tegnlsfsit dqpisvprgk dffttsnlin stgstrntta srfpwptvva illlfcslli
      481 avgirkwcqy qkeimnrpps fkpppppiky tsmvesdgtp pschelenl
//
LOCUS       XP_053912307             526 aa            linear   VRT 09-MAR-2023
DEFINITION  T-cell surface protein tactile isoform X4 [Cuculus canorus].
ACCESSION   XP_053912307
VERSION     XP_053912307.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056332.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..526
                     /product="T-cell surface protein tactile isoform X4"
                     /calculated_mol_wt=58618
     Region          40..173
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          55..59
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409383"
     Region          71..75
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409383"
     Region          120..142
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409383"
     Region          152..157
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409383"
     Region          166..169
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409383"
     CDS             1..526
                     /gene="CD96"
                     /coded_by="XM_054056332.1:273..1853"
                     /db_xref="GeneID:104056001"
ORIGIN      
        1 mqcsttyteg psmirnnikw eerttetgdw nsrqgqtedi itetevvhal pgtdvtlvcs
       61 fpkphttyii qtqwsktddn hlntiavyhp gygihystfp easynfsvsf smrkccgwda
      121 tealcspdqn itsecnqwal hlknitvsls gqyecsfvty pygtkaakiq liikeeeeqy
      181 yvkevrlnqt leiscfedta senvsnyplr wlvggngrke elvtkepscp avyrnssmly
      241 gqkvhlglnh tlqifptkit ddgrvfschv lyhperiqks sttvrvfayp eisvslqegs
      301 agtsqkpnvs civrkafpkp slvwyvdrvs lteqpgdnrs nkasseaftt mpsedlgnsa
      361 lpsavmttse hrltslesld ftsqaslasa sttqealist aetksytitt tfnesltteg
      421 nlsfsitdqp isvprgkdff ttsnlinstg strnttasrf pwptvvaill lfcslliavg
      481 irkwcqyqke imnrppsfkp ppppikytsm vesdgtppsc helenl
//
LOCUS       XP_053912308             514 aa            linear   VRT 09-MAR-2023
DEFINITION  T-cell surface protein tactile isoform X5 [Cuculus canorus].
ACCESSION   XP_053912308
VERSION     XP_053912308.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056333.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..514
                     /product="T-cell surface protein tactile isoform X5"
                     /calculated_mol_wt=57363
     Region          <69..102
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          81..86
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409383"
     Region          95..98
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409383"
     CDS             1..514
                     /gene="CD96"
                     /coded_by="XM_054056333.1:558..2102"
                     /db_xref="GeneID:104056001"
ORIGIN      
        1 mekrwffslf cllslpstag qtediitete vvhalpvsfs mrkccgwdat ealcspdqni
       61 tsecnqwalh lknitvslsg qyecsfvtyp ygtkaakiql iikeeeeqyy vkevrlnqtl
      121 eiscfedtas envsnyplrw lvggngrkee lvtkepscpa vyrnssmlyg qkvhlglnht
      181 lqifptkitd dgrvfschvl yhperiqkss ttvrvfaype isvslqegsa gtsqkpnvsc
      241 ivrkafpkps lvwyvdrvsl teqpgeisve qedmqdsegf yqlrstlmlq gthqthktfl
      301 caclfsflgn etrnisseei fvffdnrsnk asseafttmp sedlgnsalp savmttsehr
      361 ltslesldft sqaslasast tqealistae tksytitttf neslttegnl sfsitdqpis
      421 vprgkdfftt snlinstgst rnttasrfpw ptvvailllf cslliavgir kwcqyqkeim
      481 nrppsfkppp ppikytsmve sdgtppsche lenl
//
LOCUS       XP_053912309             460 aa            linear   VRT 09-MAR-2023
DEFINITION  T-cell surface protein tactile isoform X6 [Cuculus canorus].
ACCESSION   XP_053912309
VERSION     XP_053912309.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056334.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..460
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..460
                     /product="T-cell surface protein tactile isoform X6"
                     /calculated_mol_wt=51405
     CDS             1..460
                     /gene="CD96"
                     /coded_by="XM_054056334.1:271..1653"
                     /db_xref="GeneID:104056001"
ORIGIN      
        1 mqcsttyteg psmirnnikw eerttetgdw nsrqgqtedi itetevvhal peeqyyvkev
       61 rlnqtleisc fedtasenvs nyplrwlvgg ngrkeelvtk epscpavyrn ssmlygqkvh
      121 lglnhtlqif ptkitddgrv fschvlyhpe riqkssttvr vfaypeisvs lqegsagtsq
      181 kpnvscivrk afpkpslvwy vdrvslteqp geisveqedm qdsegfyqlr stlmlqgthq
      241 thktflcacl fsflgnetrn isseeifvff dnrsnkasse afttmpsedl gnsalpsavm
      301 ttsehrltsl esldftsqas lasasttqea listaetksy titttfnesl ttegnlsfsi
      361 tdqpisvprg kdffttsnli nstgstrntt asrfpwptvv ailllfcsll iavgirkwcq
      421 yqkeimnrpp sfkpppppik ytsmvesdgt ppschelenl
//
LOCUS       XP_053912310             323 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase pim-3 [Cuculus canorus].
ACCESSION   XP_053912310
VERSION     XP_053912310.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056335.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..323
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..323
                     /product="serine/threonine-protein kinase pim-3"
                     /calculated_mol_wt=36626
     Region          39..291
                     /region_name="STKc_PIM3"
                     /note="Catalytic domain of the Serine/Threonine kinase,
                     Proviral Integration Moloney virus (PIM) kinase 3;
                     cd14102"
                     /db_xref="CDD:271004"
     Site            order(46..50,54,67,69,105,121..124,129,131..132,134..135,
                     168,170..173,175,187,203..205,207,235,239..241,244)
                     /site_type="active"
                     /db_xref="CDD:271004"
     Site            order(46..50,54,67,69,105,121..124,129,168,170,172..173,
                     175,187)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:271004"
     Site            order(129,131..132,134..135,168,170..172,203..205,207,235,
                     239..241,244)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:271004"
     Site            186..207
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:271004"
     CDS             1..323
                     /gene="PIM3"
                     /coded_by="XM_054056335.1:495..1466"
                     /db_xref="GeneID:104055287"
ORIGIN      
        1 mllskfgsla hicnptsmdh lpvkilqpvk vekepfdkvy qvgsvlgsgg fgtvyagsri
       61 adglpvavkh vvkervtewg tisgvmvple ivllkkvgsg frgviklldw yerpdgylii
      121 merpelvkdl fdfitekgal deetargffr qvleavrhcy gcgvvhrdik denllvdlrt
      181 gelklidfgs gallkdtvyt dfdgtrvysp pewiryhryh grsatvwslg vllydmvcgd
      241 ipfeqdeeil rgrlyfrrrv specqqlikw clslrpsdrp tleqifdhqw mhksevvkse
      301 dcdirlrtld tdvsstsssn esl
//
LOCUS       XP_053912311             334 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: B- and T-lymphocyte attenuator [Cuculus
            canorus].
ACCESSION   XP_053912311
VERSION     XP_053912311.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056336.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 3 genomic stop codon
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..334
                     /product="LOW QUALITY PROTEIN: B- and T-lymphocyte
                     attenuator"
                     /calculated_mol_wt=36993
     Region          39..134
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          59..63
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409522"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409522"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409522"
     Region          113..118
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409522"
     Region          127..130
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409522"
     CDS             1..334
                     /gene="BTLA"
                     /coded_by="XM_054056336.1:1..1005"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     substituted 3 bases at 3 genomic stop codons"
                     /db_xref="GeneID:104056010"
ORIGIN      
        1 mkaspvmlmk rillyillvi qaxsnhqvys kigfdaatct vdiqvkrqsq yktnirssli
       61 iecpvhyckk kpdmlwckie ddtciwlkkg kxewksnvft lnpssvhqnd sglyrcqaiv
      121 dnlsseshgi kviveerpna kkpspdkyyf klidinaild ttsiseesqe sgnckilhii
      181 yastslglcc pfniicmfwc lrrhhsnkkr spltprrqes lvrnpaaaps pnagttqase
      241 esssgdycsm islmqtfpgn tiydndvlpw nvqrtasnap hndtatpstp vllesqdvlt
      301 xaalnxaasa ercqkreltv ekdfteyaci nihk
//
LOCUS       XP_053912312            1078 aa            linear   VRT 09-MAR-2023
DEFINITION  FERM domain-containing protein 4A isoform X1 [Cuculus canorus].
ACCESSION   XP_053912312
VERSION     XP_053912312.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056337.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1078
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1078
                     /product="FERM domain-containing protein 4A isoform X1"
                     /calculated_mol_wt=121653
     Region          56..144
                     /region_name="FERM_F1_FRMD4B"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F1 sub-domain, found in FERM domain-containing
                     protein 4B (FRMD4B); cd17200"
                     /db_xref="CDD:340720"
     Region          59..259
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Region          255..365
                     /region_name="FERM_C_FRMD4A_FRMD4B"
                     /note="FERM domain C-lobe of FERM domain-containing
                     protein 4A and 4B (FRMD4A and 4B); cd13191"
                     /db_xref="CDD:270012"
     Site            order(263,280,282,291)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:270012"
     Site            order(295,300..303,346,350,353..354)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270012"
     Site            346..357
                     /site_type="other"
                     /note="putative actin binding site 2 [polypeptide
                     binding]"
                     /db_xref="CDD:270012"
     Region          394..529
                     /region_name="CUPID"
                     /note="Cytohesin Ubiquitin Protein Inducing Domain;
                     pfam11819"
                     /db_xref="CDD:463360"
     CDS             1..1078
                     /gene="FRMD4A"
                     /coded_by="XM_054056337.1:196..3432"
                     /db_xref="GeneID:104066438"
ORIGIN      
        1 maavlfgfed llyswdslvw sltsralrtc rfgnlrvlql mlkpwcisrd vyqmtegrrc
       61 qvhllddrkl ellvqpklla kelldlvash fnlkekeyfg iaftdetghl nwlqldrrvl
      121 ehdfpkksgp vvlyfcvrfy iesisylkdn atielfflna ksciykelie vdsevvfela
      181 ayilqeakgd fssnevvrne lkklpalptp alkehpslay cedrviehyk klngqtrgqa
      241 ivnymsives lptygvhyya vkdkqgipww lglsykgifq ydyhdkvkpr kifqwrqlen
      301 lyfrekkfsv evhdprrasv trrtfghsgi avhtwyacpa liksiwamai sqhqfyldrk
      361 qskskihaar slseiaidlt etgtlktskl anmgskgkii sgssgsllss gsqesdssqs
      421 akkdmlaalk srqealeetl rqrleelkkl clreaeltgk lpreypldpg eeppivrrri
      481 gtafkldeqk ilpkgeeael erlerefaiq sqiteaarrl asdpnvskkl kkqrktsyln
      541 alkklqeien aineyriksg kkptqrasli idegniased sslsdalvle dddsqvtsti
      601 splqsphkgl pprpplhnrp pppqsleglr qmhyhrndyd kspikpkmws essldepyek
      661 vkkrsshshs sshkrfpstg scaeaggsss lqnspirslg hwnsqssmps tpdlrvrsph
      721 yvhstrsvdi sptrlhslaq hfrhrsssle sqgkllgsen etgspdfytp rtrssngsdp
      781 mddcssctsh sssehyypaq mnpnystlae dspskarerq rqrhksagnl vssnsgsmpn
      841 laarngtghh rvylhsqsqp ssqyrikeyp lyiegsstpv vvrslendqe ghysvkaqfk
      901 tsnsytaggm fkenwhgdev dsvrltpsrs qiirtpslgr eghekgsgrt avsdelrlwy
      961 qrstashkdh srlshtssts sdsssqysts sqstfvahsr vtrmpqmcka tsaalphsqr
     1021 sstpsselaa tppgsphhil twqtgsynds cfldspvype ladvqwygqe kakpgtlv
//
LOCUS       XP_053912313            1067 aa            linear   VRT 09-MAR-2023
DEFINITION  FERM domain-containing protein 4A isoform X2 [Cuculus canorus].
ACCESSION   XP_053912313
VERSION     XP_053912313.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056338.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1067
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1067
                     /product="FERM domain-containing protein 4A isoform X2"
                     /calculated_mol_wt=120340
     Region          56..144
                     /region_name="FERM_F1_FRMD4B"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F1 sub-domain, found in FERM domain-containing
                     protein 4B (FRMD4B); cd17200"
                     /db_xref="CDD:340720"
     Region          59..259
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Region          255..365
                     /region_name="FERM_C_FRMD4A_FRMD4B"
                     /note="FERM domain C-lobe of FERM domain-containing
                     protein 4A and 4B (FRMD4A and 4B); cd13191"
                     /db_xref="CDD:270012"
     Site            order(263,280,282,291)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:270012"
     Site            order(295,300..303,346,350,353..354)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270012"
     Site            346..357
                     /site_type="other"
                     /note="putative actin binding site 2 [polypeptide
                     binding]"
                     /db_xref="CDD:270012"
     Region          394..529
                     /region_name="CUPID"
                     /note="Cytohesin Ubiquitin Protein Inducing Domain;
                     pfam11819"
                     /db_xref="CDD:463360"
     CDS             1..1067
                     /gene="FRMD4A"
                     /coded_by="XM_054056338.1:220..3423"
                     /db_xref="GeneID:104066438"
ORIGIN      
        1 maavlfgfed llyswdslvw sltsralrtc rfgnlrvlql mlkpwcisrd vyqmtegrrc
       61 qvhllddrkl ellvqpklla kelldlvash fnlkekeyfg iaftdetghl nwlqldrrvl
      121 ehdfpkksgp vvlyfcvrfy iesisylkdn atielfflna ksciykelie vdsevvfela
      181 ayilqeakgd fssnevvrne lkklpalptp alkehpslay cedrviehyk klngqtrgqa
      241 ivnymsives lptygvhyya vkdkqgipww lglsykgifq ydyhdkvkpr kifqwrqlen
      301 lyfrekkfsv evhdprrasv trrtfghsgi avhtwyacpa liksiwamai sqhqfyldrk
      361 qskskihaar slseiaidlt etgtlktskl anmgskgkii sgssgsllss gsqesdssqs
      421 akkdmlaalk srqealeetl rqrleelkkl clreaeltgk lpreypldpg eeppivrrri
      481 gtafkldeqk ilpkgeeael erlerefaiq sqiteaarrl asdpnvskkl kkqrktsyln
      541 alkklqeien aineyriksg kkptqrasli idegniased sslsdalvle dddsqvtsti
      601 splqsphkgl pprpplhnrp pppqsleglr qmhyhrndyd kspikpkmws essldepyek
      661 vkkrsshshs sshkrfpstg scaeaggsss lqnspirslg hwnsqssmps tpdlrvrsph
      721 yvhstrsvdi sptrlhslaq hfrhrsssle sqgkllgsen etgspdfytp rtrssngsdp
      781 mddcssctsh sssehyypaq mnpnystlae dspskarerq rqrhksagnl vssnsgsmpn
      841 laarngtghh rvylhsqsqp ssqyrikeyp lyiegsstpv vvrslendqe ghysvkaqfk
      901 tsnsytaggm fkenwhgdev dsvrltpsrs qiirtpslgr eghekgsgrt avsdelrlwy
      961 qrstashkdh srlshtssts sdsssqysts sqstfvahsr vtrmpqmcka tsaalphsqr
     1021 sstpsselaa tppgsphhil twqtgeatdn sptmdesqsp thqstde
//
LOCUS       XP_053912316            1056 aa            linear   VRT 09-MAR-2023
DEFINITION  FERM domain-containing protein 4A isoform X3 [Cuculus canorus].
ACCESSION   XP_053912316
VERSION     XP_053912316.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056341.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1056
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1056
                     /product="FERM domain-containing protein 4A isoform X3"
                     /calculated_mol_wt=119027
     Region          34..122
                     /region_name="FERM_F1_FRMD4B"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F1 sub-domain, found in FERM domain-containing
                     protein 4B (FRMD4B); cd17200"
                     /db_xref="CDD:340720"
     Region          37..237
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Region          233..343
                     /region_name="FERM_C_FRMD4A_FRMD4B"
                     /note="FERM domain C-lobe of FERM domain-containing
                     protein 4A and 4B (FRMD4A and 4B); cd13191"
                     /db_xref="CDD:270012"
     Site            order(241,258,260,269)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:270012"
     Site            order(273,278..281,324,328,331..332)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270012"
     Site            324..335
                     /site_type="other"
                     /note="putative actin binding site 2 [polypeptide
                     binding]"
                     /db_xref="CDD:270012"
     Region          372..507
                     /region_name="CUPID"
                     /note="Cytohesin Ubiquitin Protein Inducing Domain;
                     pfam11819"
                     /db_xref="CDD:463360"
     CDS             1..1056
                     /gene="FRMD4A"
                     /coded_by="XM_054056341.1:16..3186"
                     /db_xref="GeneID:104066438"
ORIGIN      
        1 mvvqtavtpg rtrrllfkip ygslrrrsve rmtegrrcqv hllddrklel lvqpkllake
       61 lldlvashfn lkekeyfgia ftdetghlnw lqldrrvleh dfpkksgpvv lyfcvrfyie
      121 sisylkdnat ielfflnaks ciykelievd sevvfelaay ilqeakgdfs snevvrnelk
      181 klpalptpal kehpslayce drviehykkl ngqtrgqaiv nymsiveslp tygvhyyavk
      241 dkqgipwwlg lsykgifqyd yhdkvkprki fqwrqlenly frekkfsvev hdprrasvtr
      301 rtfghsgiav htwyacpali ksiwamaisq hqfyldrkqs kskihaarsl seiaidltet
      361 gtlktsklan mgskgkiisg ssgsllssgs qesdssqsak kdmlaalksr qealeetlrq
      421 rleelkklcl reaeltgklp reypldpgee ppivrrrigt afkldeqkil pkgeeaeler
      481 lerefaiqsq iteaarrlas dpnvskklkk qrktsylnal kklqeienai neyriksgkk
      541 ptqrasliid egniasedss lsdalvledd dsqvtstisp lqsphkglpp rpplhnrppp
      601 pqsleglrqm hyhrndydks pikpkmwses sldepyekvk krsshshsss hkrfpstgsc
      661 aeaggssslq nspirslghw nsqssmpstp dlrvrsphyv hstrsvdisp trlhslaqhf
      721 rhrssslesq gkllgsenet gspdfytprt rssngsdpmd dcssctshss sehyypaqmn
      781 pnystlaeds pskarerqrq rhksagnlvs snsgsmpnla arngtghhrv ylhsqsqpss
      841 qyrikeyply iegsstpvvv rslendqegh ysvkaqfkts nsytaggmfk enwhgdevds
      901 vrltpsrsqi irtpslgreg hekgsgrtav sdelrlwyqr stashkdhsr lshtsstssd
      961 sssqystssq stfvahsrvt rmpqmckats aalphsqrss tpsselaatp pgsphhiltw
     1021 qtgsyndscf ldspvypela dvqwygqeka kpgtlv
//
LOCUS       XP_053912317            1047 aa            linear   VRT 09-MAR-2023
DEFINITION  FERM domain-containing protein 4A isoform X4 [Cuculus canorus].
ACCESSION   XP_053912317
VERSION     XP_053912317.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056342.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1047
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1047
                     /product="FERM domain-containing protein 4A isoform X4"
                     /calculated_mol_wt=117915
     Region          25..113
                     /region_name="FERM_F1_FRMD4B"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F1 sub-domain, found in FERM domain-containing
                     protein 4B (FRMD4B); cd17200"
                     /db_xref="CDD:340720"
     Region          28..228
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Region          224..334
                     /region_name="FERM_C_FRMD4A_FRMD4B"
                     /note="FERM domain C-lobe of FERM domain-containing
                     protein 4A and 4B (FRMD4A and 4B); cd13191"
                     /db_xref="CDD:270012"
     Site            order(232,249,251,260)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:270012"
     Site            order(264,269..272,315,319,322..323)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270012"
     Site            315..326
                     /site_type="other"
                     /note="putative actin binding site 2 [polypeptide
                     binding]"
                     /db_xref="CDD:270012"
     Region          363..498
                     /region_name="CUPID"
                     /note="Cytohesin Ubiquitin Protein Inducing Domain;
                     pfam11819"
                     /db_xref="CDD:463360"
     CDS             1..1047
                     /gene="FRMD4A"
                     /coded_by="XM_054056342.1:334..3477"
                     /db_xref="GeneID:104066438"
ORIGIN      
        1 mtlaakledi evtlehllmd vfmtegrrcq vhllddrkle llvqpkllak elldlvashf
       61 nlkekeyfgi aftdetghln wlqldrrvle hdfpkksgpv vlyfcvrfyi esisylkdna
      121 tielfflnak sciykeliev dsevvfelaa yilqeakgdf ssnevvrnel kklpalptpa
      181 lkehpslayc edrviehykk lngqtrgqai vnymsivesl ptygvhyyav kdkqgipwwl
      241 glsykgifqy dyhdkvkprk ifqwrqlenl yfrekkfsve vhdprrasvt rrtfghsgia
      301 vhtwyacpal iksiwamais qhqfyldrkq skskihaars lseiaidlte tgtlktskla
      361 nmgskgkiis gssgsllssg sqesdssqsa kkdmlaalks rqealeetlr qrleelkklc
      421 lreaeltgkl preypldpge eppivrrrig tafkldeqki lpkgeeaele rlerefaiqs
      481 qiteaarrla sdpnvskklk kqrktsylna lkklqeiena ineyriksgk kptqraslii
      541 degniaseds slsdalvled ddsqvtstis plqsphkglp prpplhnrpp ppqsleglrq
      601 mhyhrndydk spikpkmwse ssldepyekv kkrsshshss shkrfpstgs caeaggsssl
      661 qnspirslgh wnsqssmpst pdlrvrsphy vhstrsvdis ptrlhslaqh frhrsssles
      721 qgkllgsene tgspdfytpr trssngsdpm ddcssctshs ssehyypaqm npnystlaed
      781 spskarerqr qrhksagnlv ssnsgsmpnl aarngtghhr vylhsqsqps sqyrikeypl
      841 yiegsstpvv vrslendqeg hysvkaqfkt snsytaggmf kenwhgdevd svrltpsrsq
      901 iirtpslgre ghekgsgrta vsdelrlwyq rstashkdhs rlshtsstss dsssqystss
      961 qstfvahsrv trmpqmckat saalphsqrs stpsselaat ppgsphhilt wqtgsyndsc
     1021 fldspvypel advqwygqek akpgtlv
//
LOCUS       XP_053912318            1045 aa            linear   VRT 09-MAR-2023
DEFINITION  FERM domain-containing protein 4A isoform X5 [Cuculus canorus].
ACCESSION   XP_053912318
VERSION     XP_053912318.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056343.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1045
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1045
                     /product="FERM domain-containing protein 4A isoform X5"
                     /calculated_mol_wt=117714
     Region          34..122
                     /region_name="FERM_F1_FRMD4B"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F1 sub-domain, found in FERM domain-containing
                     protein 4B (FRMD4B); cd17200"
                     /db_xref="CDD:340720"
     Region          37..237
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Region          233..343
                     /region_name="FERM_C_FRMD4A_FRMD4B"
                     /note="FERM domain C-lobe of FERM domain-containing
                     protein 4A and 4B (FRMD4A and 4B); cd13191"
                     /db_xref="CDD:270012"
     Site            order(241,258,260,269)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:270012"
     Site            order(273,278..281,324,328,331..332)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270012"
     Site            324..335
                     /site_type="other"
                     /note="putative actin binding site 2 [polypeptide
                     binding]"
                     /db_xref="CDD:270012"
     Region          372..507
                     /region_name="CUPID"
                     /note="Cytohesin Ubiquitin Protein Inducing Domain;
                     pfam11819"
                     /db_xref="CDD:463360"
     CDS             1..1045
                     /gene="FRMD4A"
                     /coded_by="XM_054056343.1:16..3153"
                     /db_xref="GeneID:104066438"
ORIGIN      
        1 mvvqtavtpg rtrrllfkip ygslrrrsve rmtegrrcqv hllddrklel lvqpkllake
       61 lldlvashfn lkekeyfgia ftdetghlnw lqldrrvleh dfpkksgpvv lyfcvrfyie
      121 sisylkdnat ielfflnaks ciykelievd sevvfelaay ilqeakgdfs snevvrnelk
      181 klpalptpal kehpslayce drviehykkl ngqtrgqaiv nymsiveslp tygvhyyavk
      241 dkqgipwwlg lsykgifqyd yhdkvkprki fqwrqlenly frekkfsvev hdprrasvtr
      301 rtfghsgiav htwyacpali ksiwamaisq hqfyldrkqs kskihaarsl seiaidltet
      361 gtlktsklan mgskgkiisg ssgsllssgs qesdssqsak kdmlaalksr qealeetlrq
      421 rleelkklcl reaeltgklp reypldpgee ppivrrrigt afkldeqkil pkgeeaeler
      481 lerefaiqsq iteaarrlas dpnvskklkk qrktsylnal kklqeienai neyriksgkk
      541 ptqrasliid egniasedss lsdalvledd dsqvtstisp lqsphkglpp rpplhnrppp
      601 pqsleglrqm hyhrndydks pikpkmwses sldepyekvk krsshshsss hkrfpstgsc
      661 aeaggssslq nspirslghw nsqssmpstp dlrvrsphyv hstrsvdisp trlhslaqhf
      721 rhrssslesq gkllgsenet gspdfytprt rssngsdpmd dcssctshss sehyypaqmn
      781 pnystlaeds pskarerqrq rhksagnlvs snsgsmpnla arngtghhrv ylhsqsqpss
      841 qyrikeyply iegsstpvvv rslendqegh ysvkaqfkts nsytaggmfk enwhgdevds
      901 vrltpsrsqi irtpslgreg hekgsgrtav sdelrlwyqr stashkdhsr lshtsstssd
      961 sssqystssq stfvahsrvt rmpqmckats aalphsqrss tpsselaatp pgsphhiltw
     1021 qtgeatdnsp tmdesqspth qstde
//
LOCUS       XP_053912319            1040 aa            linear   VRT 09-MAR-2023
DEFINITION  FERM domain-containing protein 4A isoform X6 [Cuculus canorus].
ACCESSION   XP_053912319
VERSION     XP_053912319.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056344.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1040
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1040
                     /product="FERM domain-containing protein 4A isoform X6"
                     /calculated_mol_wt=117000
     Region          18..106
                     /region_name="FERM_F1_FRMD4B"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F1 sub-domain, found in FERM domain-containing
                     protein 4B (FRMD4B); cd17200"
                     /db_xref="CDD:340720"
     Region          21..221
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Region          217..327
                     /region_name="FERM_C_FRMD4A_FRMD4B"
                     /note="FERM domain C-lobe of FERM domain-containing
                     protein 4A and 4B (FRMD4A and 4B); cd13191"
                     /db_xref="CDD:270012"
     Site            order(225,242,244,253)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:270012"
     Site            order(257,262..265,308,312,315..316)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270012"
     Site            308..319
                     /site_type="other"
                     /note="putative actin binding site 2 [polypeptide
                     binding]"
                     /db_xref="CDD:270012"
     Region          356..491
                     /region_name="CUPID"
                     /note="Cytohesin Ubiquitin Protein Inducing Domain;
                     pfam11819"
                     /db_xref="CDD:463360"
     CDS             1..1040
                     /gene="FRMD4A"
                     /coded_by="XM_054056344.1:156..3278"
                     /db_xref="GeneID:104066438"
ORIGIN      
        1 mavqrapesa lsllmmtegr rcqvhllddr klellvqpkl lakelldlva shfnlkekey
       61 fgiaftdetg hlnwlqldrr vlehdfpkks gpvvlyfcvr fyiesisylk dnatielffl
      121 naksciykel ievdsevvfe laayilqeak gdfssnevvr nelkklpalp tpalkehpsl
      181 aycedrvieh ykklngqtrg qaivnymsiv eslptygvhy yavkdkqgip wwlglsykgi
      241 fqydyhdkvk prkifqwrql enlyfrekkf svevhdprra svtrrtfghs giavhtwyac
      301 paliksiwam aisqhqfyld rkqskskiha arslseiaid ltetgtlkts klanmgskgk
      361 iisgssgsll ssgsqesdss qsakkdmlaa lksrqealee tlrqrleelk klclreaelt
      421 gklpreypld pgeeppivrr rigtafklde qkilpkgeea elerlerefa iqsqiteaar
      481 rlasdpnvsk klkkqrktsy lnalkklqei enaineyrik sgkkptqras liidegnias
      541 edsslsdalv ledddsqvts tisplqsphk glpprpplhn rppppqsleg lrqmhyhrnd
      601 ydkspikpkm wsessldepy ekvkkrsshs hssshkrfps tgscaeaggs sslqnspirs
      661 lghwnsqssm pstpdlrvrs phyvhstrsv disptrlhsl aqhfrhrsss lesqgkllgs
      721 enetgspdfy tprtrssngs dpmddcssct shsssehyyp aqmnpnystl aedspskare
      781 rqrqrhksag nlvssnsgsm pnlaarngtg hhrvylhsqs qpssqyrike yplyiegsst
      841 pvvvrslend qeghysvkaq fktsnsytag gmfkenwhgd evdsvrltps rsqiirtpsl
      901 greghekgsg rtavsdelrl wyqrstashk dhsrlshtss tssdsssqys tssqstfvah
      961 srvtrmpqmc katsaalphs qrsstpssel aatppgsphh iltwqtgsyn dscfldspvy
     1021 peladvqwyg qekakpgtlv
//
LOCUS       XP_053912320            1040 aa            linear   VRT 09-MAR-2023
DEFINITION  FERM domain-containing protein 4A isoform X6 [Cuculus canorus].
ACCESSION   XP_053912320
VERSION     XP_053912320.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056345.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1040
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1040
                     /product="FERM domain-containing protein 4A isoform X6"
                     /calculated_mol_wt=117000
     Region          18..106
                     /region_name="FERM_F1_FRMD4B"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F1 sub-domain, found in FERM domain-containing
                     protein 4B (FRMD4B); cd17200"
                     /db_xref="CDD:340720"
     Region          21..221
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Region          217..327
                     /region_name="FERM_C_FRMD4A_FRMD4B"
                     /note="FERM domain C-lobe of FERM domain-containing
                     protein 4A and 4B (FRMD4A and 4B); cd13191"
                     /db_xref="CDD:270012"
     Site            order(225,242,244,253)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:270012"
     Site            order(257,262..265,308,312,315..316)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270012"
     Site            308..319
                     /site_type="other"
                     /note="putative actin binding site 2 [polypeptide
                     binding]"
                     /db_xref="CDD:270012"
     Region          356..491
                     /region_name="CUPID"
                     /note="Cytohesin Ubiquitin Protein Inducing Domain;
                     pfam11819"
                     /db_xref="CDD:463360"
     CDS             1..1040
                     /gene="FRMD4A"
                     /coded_by="XM_054056345.1:160..3282"
                     /db_xref="GeneID:104066438"
ORIGIN      
        1 mavqrapesa lsllmmtegr rcqvhllddr klellvqpkl lakelldlva shfnlkekey
       61 fgiaftdetg hlnwlqldrr vlehdfpkks gpvvlyfcvr fyiesisylk dnatielffl
      121 naksciykel ievdsevvfe laayilqeak gdfssnevvr nelkklpalp tpalkehpsl
      181 aycedrvieh ykklngqtrg qaivnymsiv eslptygvhy yavkdkqgip wwlglsykgi
      241 fqydyhdkvk prkifqwrql enlyfrekkf svevhdprra svtrrtfghs giavhtwyac
      301 paliksiwam aisqhqfyld rkqskskiha arslseiaid ltetgtlkts klanmgskgk
      361 iisgssgsll ssgsqesdss qsakkdmlaa lksrqealee tlrqrleelk klclreaelt
      421 gklpreypld pgeeppivrr rigtafklde qkilpkgeea elerlerefa iqsqiteaar
      481 rlasdpnvsk klkkqrktsy lnalkklqei enaineyrik sgkkptqras liidegnias
      541 edsslsdalv ledddsqvts tisplqsphk glpprpplhn rppppqsleg lrqmhyhrnd
      601 ydkspikpkm wsessldepy ekvkkrsshs hssshkrfps tgscaeaggs sslqnspirs
      661 lghwnsqssm pstpdlrvrs phyvhstrsv disptrlhsl aqhfrhrsss lesqgkllgs
      721 enetgspdfy tprtrssngs dpmddcssct shsssehyyp aqmnpnystl aedspskare
      781 rqrqrhksag nlvssnsgsm pnlaarngtg hhrvylhsqs qpssqyrike yplyiegsst
      841 pvvvrslend qeghysvkaq fktsnsytag gmfkenwhgd evdsvrltps rsqiirtpsl
      901 greghekgsg rtavsdelrl wyqrstashk dhsrlshtss tssdsssqys tssqstfvah
      961 srvtrmpqmc katsaalphs qrsstpssel aatppgsphh iltwqtgsyn dscfldspvy
     1021 peladvqwyg qekakpgtlv
//
LOCUS       XP_053912321            1036 aa            linear   VRT 09-MAR-2023
DEFINITION  FERM domain-containing protein 4A isoform X7 [Cuculus canorus].
ACCESSION   XP_053912321
VERSION     XP_053912321.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056346.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1036
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1036
                     /product="FERM domain-containing protein 4A isoform X7"
                     /calculated_mol_wt=116646
     Region          14..102
                     /region_name="FERM_F1_FRMD4B"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F1 sub-domain, found in FERM domain-containing
                     protein 4B (FRMD4B); cd17200"
                     /db_xref="CDD:340720"
     Region          17..217
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Region          213..323
                     /region_name="FERM_C_FRMD4A_FRMD4B"
                     /note="FERM domain C-lobe of FERM domain-containing
                     protein 4A and 4B (FRMD4A and 4B); cd13191"
                     /db_xref="CDD:270012"
     Site            order(221,238,240,249)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:270012"
     Site            order(253,258..261,304,308,311..312)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270012"
     Site            304..315
                     /site_type="other"
                     /note="putative actin binding site 2 [polypeptide
                     binding]"
                     /db_xref="CDD:270012"
     Region          352..487
                     /region_name="CUPID"
                     /note="Cytohesin Ubiquitin Protein Inducing Domain;
                     pfam11819"
                     /db_xref="CDD:463360"
     CDS             1..1036
                     /gene="FRMD4A"
                     /coded_by="XM_054056346.1:216..3326"
                     /db_xref="GeneID:104066438"
ORIGIN      
        1 megllspmrt kmtegrrcqv hllddrklel lvqpkllake lldlvashfn lkekeyfgia
       61 ftdetghlnw lqldrrvleh dfpkksgpvv lyfcvrfyie sisylkdnat ielfflnaks
      121 ciykelievd sevvfelaay ilqeakgdfs snevvrnelk klpalptpal kehpslayce
      181 drviehykkl ngqtrgqaiv nymsiveslp tygvhyyavk dkqgipwwlg lsykgifqyd
      241 yhdkvkprki fqwrqlenly frekkfsvev hdprrasvtr rtfghsgiav htwyacpali
      301 ksiwamaisq hqfyldrkqs kskihaarsl seiaidltet gtlktsklan mgskgkiisg
      361 ssgsllssgs qesdssqsak kdmlaalksr qealeetlrq rleelkklcl reaeltgklp
      421 reypldpgee ppivrrrigt afkldeqkil pkgeeaeler lerefaiqsq iteaarrlas
      481 dpnvskklkk qrktsylnal kklqeienai neyriksgkk ptqrasliid egniasedss
      541 lsdalvledd dsqvtstisp lqsphkglpp rpplhnrppp pqsleglrqm hyhrndydks
      601 pikpkmwses sldepyekvk krsshshsss hkrfpstgsc aeaggssslq nspirslghw
      661 nsqssmpstp dlrvrsphyv hstrsvdisp trlhslaqhf rhrssslesq gkllgsenet
      721 gspdfytprt rssngsdpmd dcssctshss sehyypaqmn pnystlaeds pskarerqrq
      781 rhksagnlvs snsgsmpnla arngtghhrv ylhsqsqpss qyrikeyply iegsstpvvv
      841 rslendqegh ysvkaqfkts nsytaggmfk enwhgdevds vrltpsrsqi irtpslgreg
      901 hekgsgrtav sdelrlwyqr stashkdhsr lshtsstssd sssqystssq stfvahsrvt
      961 rmpqmckats aalphsqrss tpsselaatp pgsphhiltw qtgsyndscf ldspvypela
     1021 dvqwygqeka kpgtlv
//
LOCUS       XP_053912322            1025 aa            linear   VRT 09-MAR-2023
DEFINITION  FERM domain-containing protein 4A isoform X8 [Cuculus canorus].
ACCESSION   XP_053912322
VERSION     XP_053912322.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056347.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1025
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1025
                     /product="FERM domain-containing protein 4A isoform X8"
                     /calculated_mol_wt=115401
     Region          3..91
                     /region_name="FERM_F1_FRMD4B"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F1 sub-domain, found in FERM domain-containing
                     protein 4B (FRMD4B); cd17200"
                     /db_xref="CDD:340720"
     Region          6..206
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Region          202..312
                     /region_name="FERM_C_FRMD4A_FRMD4B"
                     /note="FERM domain C-lobe of FERM domain-containing
                     protein 4A and 4B (FRMD4A and 4B); cd13191"
                     /db_xref="CDD:270012"
     Site            order(210,227,229,238)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:270012"
     Site            order(242,247..250,293,297,300..301)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270012"
     Site            293..304
                     /site_type="other"
                     /note="putative actin binding site 2 [polypeptide
                     binding]"
                     /db_xref="CDD:270012"
     Region          341..476
                     /region_name="CUPID"
                     /note="Cytohesin Ubiquitin Protein Inducing Domain;
                     pfam11819"
                     /db_xref="CDD:463360"
     CDS             1..1025
                     /gene="FRMD4A"
                     /coded_by="XM_054056347.1:142..3219"
                     /db_xref="GeneID:104066438"
ORIGIN      
        1 mtegrrcqvh llddrklell vqpkllakel ldlvashfnl kekeyfgiaf tdetghlnwl
       61 qldrrvlehd fpkksgpvvl yfcvrfyies isylkdnati elfflnaksc iykelievds
      121 evvfelaayi lqeakgdfss nevvrnelkk lpalptpalk ehpslayced rviehykkln
      181 gqtrgqaivn ymsiveslpt ygvhyyavkd kqgipwwlgl sykgifqydy hdkvkprkif
      241 qwrqlenlyf rekkfsvevh dprrasvtrr tfghsgiavh twyacpalik siwamaisqh
      301 qfyldrkqsk skihaarsls eiaidltetg tlktsklanm gskgkiisgs sgsllssgsq
      361 esdssqsakk dmlaalksrq ealeetlrqr leelkklclr eaeltgklpr eypldpgeep
      421 pivrrrigta fkldeqkilp kgeeaelerl erefaiqsqi teaarrlasd pnvskklkkq
      481 rktsylnalk klqeienain eyriksgkkp tqrasliide gniasedssl sdalvleddd
      541 sqvtstispl qsphkglppr pplhnrpppp qsleglrqmh yhrndydksp ikpkmwsess
      601 ldepyekvkk rsshshsssh krfpstgsca eaggssslqn spirslghwn sqssmpstpd
      661 lrvrsphyvh strsvdispt rlhslaqhfr hrssslesqg kllgsenetg spdfytprtr
      721 ssngsdpmdd cssctshsss ehyypaqmnp nystlaedsp skarerqrqr hksagnlvss
      781 nsgsmpnlaa rngtghhrvy lhsqsqpssq yrikeyplyi egsstpvvvr slendqeghy
      841 svkaqfktsn sytaggmfke nwhgdevdsv rltpsrsqii rtpslgregh ekgsgrtavs
      901 delrlwyqrs tashkdhsrl shtsstssds ssqystssqs tfvahsrvtr mpqmckatsa
      961 alphsqrsst psselaatpp gsphhiltwq tgsyndscfl dspvypelad vqwygqekak
     1021 pgtlv
//
LOCUS       XP_053912323             351 aa            linear   VRT 09-MAR-2023
DEFINITION  pre-mRNA-splicing factor 18 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912323
VERSION     XP_053912323.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056348.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..351
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..351
                     /product="pre-mRNA-splicing factor 18 isoform X1"
                     /calculated_mol_wt=40600
     Region          88..131
                     /region_name="SFM"
                     /note="Splicing Factor Motif, present in Prp18 and Pr04;
                     smart00500"
                     /db_xref="CDD:128776"
     Region          199..339
                     /region_name="Prp18"
                     /note="Prp18 domain; pfam02840"
                     /db_xref="CDD:460720"
     CDS             1..351
                     /gene="PRPF18"
                     /coded_by="XM_054056348.1:37..1092"
                     /db_xref="GeneID:104066189"
ORIGIN      
        1 mdilkreisr krqhleekel vggnkkyfkr selakkeeea yyqrcgykpv nekppgevqq
       61 eeeeekplts snpvlelela eeklpmtlsr qevirrlrer gepirlfget dydafqrlrk
      121 ieilapevnk glrndlkaal dkidqqylne ivggqeagdd dsqndlkvhe enttieelea
      181 lgeslgrgdd hydmdiitkf lkfllgvwak elnaredyvk rgvqgklnsa tqkqtesylr
      241 plfrklrkrt lpadikesit diikfmlqre yvkandaylq maignapwpi gvtmvgihar
      301 tgrekifskh vahvlndetq rkyiqglkrl mticqkhfpt dpskcveyna l
//
LOCUS       XP_009567059             342 aa            linear   VRT 09-MAR-2023
DEFINITION  pre-mRNA-splicing factor 18 isoform X2 [Cuculus canorus].
ACCESSION   XP_009567059
VERSION     XP_009567059.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568764.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..342
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..342
                     /product="pre-mRNA-splicing factor 18 isoform X2"
                     /calculated_mol_wt=39652
     Region          79..122
                     /region_name="SFM"
                     /note="Splicing Factor Motif, present in Prp18 and Pr04;
                     smart00500"
                     /db_xref="CDD:128776"
     Region          190..330
                     /region_name="Prp18"
                     /note="Prp18 domain; pfam02840"
                     /db_xref="CDD:460720"
     CDS             1..342
                     /gene="PRPF18"
                     /coded_by="XM_009568764.2:37..1065"
                     /db_xref="GeneID:104066189"
ORIGIN      
        1 mdilkreisr krqhleekel vggnkkyfkr selakkeeea yyqrcgykvq qeeeeekplt
       61 ssnpvlelel aeeklpmtls rqevirrlre rgepirlfge tdydafqrlr kieilapevn
      121 kglrndlkaa ldkidqqyln eivggqeagd ddsqndlkvh eenttieele algeslgrgd
      181 dhydmdiitk flkfllgvwa kelnaredyv krgvqgklns atqkqtesyl rplfrklrkr
      241 tlpadikesi tdiikfmlqr eyvkandayl qmaignapwp igvtmvgiha rtgrekifsk
      301 hvahvlndet qrkyiqglkr lmticqkhfp tdpskcveyn al
//
LOCUS       XP_009567528             199 aa            linear   VRT 09-MAR-2023
DEFINITION  cyclin-dependent kinase inhibitor 1B [Cuculus canorus].
ACCESSION   XP_009567528
VERSION     XP_009567528.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009569233.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..199
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..199
                     /product="cyclin-dependent kinase inhibitor 1B"
                     /calculated_mol_wt=22483
     Region          32..77
                     /region_name="CDI"
                     /note="Cyclin-dependent kinase inhibitor; pfam02234"
                     /db_xref="CDD:460503"
     CDS             1..199
                     /gene="CDKN1B"
                     /coded_by="XM_009569233.2:435..1034"
                     /db_xref="GeneID:104066610"
ORIGIN      
        1 msnvrisngs ptlermearq seypkpsacr nlfgpvnhee lnrdlmkhrq emeeacqrkw
       61 nfdfqnhkpl egryewqvve kgsspdfyfr pprllkvvck ssgrqsldvn gncqtvvfvg
      121 sqgisedthc vdqktgvsen setdfaeqct gqrkrpatdd sspqnkrant teeevsedsp
      181 sassveqtpk kssprrlqt
//
LOCUS       XP_053912325             695 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 SUMO-protein ligase ZBED1 [Cuculus canorus].
ACCESSION   XP_053912325
VERSION     XP_053912325.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056350.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..695
                     /product="E3 SUMO-protein ligase ZBED1"
                     /calculated_mol_wt=79572
     Region          23..72
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          570..650
                     /region_name="Dimer_Tnp_hAT"
                     /note="hAT family C-terminal dimerization region;
                     pfam05699"
                     /db_xref="CDD:399013"
     CDS             1..695
                     /gene="ZBED1"
                     /coded_by="XM_054056350.1:207..2294"
                     /db_xref="GeneID:104063727"
ORIGIN      
        1 menkslegsp sdlklvahpr akskvwkyfg fdtnaegcil qwkkiycric maqiaysgnt
       61 snlsyhlekn hpdefcefvk snteqmreaf atafskikpe ssqqvvqdsl imktyqnyen
      121 kkhqeltsav islicegmyp asivdeptfk allrtvdpry elpsrkyfct kaipekysai
      181 reivlkelte vlwcgistdm wrsenqnrsy vtvavhflss ssanclavns rclktfevpe
      241 dntaetitrv lyetfiewgi nskvfgattd yskdivkacs lldipvqmpc lghtfnagiq
      301 qafqlpklcs llarcrklve yfqqstvamy mlsekqkqqn ilhcmlvsdr vswwgstlam
      361 lqrlkeqqfv iaavlvedsn nhhlmlease wntieglvel lqpfkqvaem msaskyptis
      421 mvkpllhmll nttlnikend lkeismakev iakelsttyq htpeidmfln vatfldpryk
      481 klpflsafer qqvenrvvee aksllekvke ntfrteekff avseeppvkk iiisstpppt
      541 svinnmlaei fcqtggvedq eewhaqiiee lsnfksqkvl glnedplkww sdrlalfpvl
      601 pkvlqkywci latrvfperl fgssanvvsa krnrlapahv deqiflyens rngseaeped
      661 edegewgleq eqifnlndsv nvnnnffnir dsgfv
//
LOCUS       XP_053912326             695 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 SUMO-protein ligase ZBED1 [Cuculus canorus].
ACCESSION   XP_053912326
VERSION     XP_053912326.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056351.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..695
                     /product="E3 SUMO-protein ligase ZBED1"
                     /calculated_mol_wt=79572
     Region          23..72
                     /region_name="zf-BED"
                     /note="BED zinc finger; pfam02892"
                     /db_xref="CDD:427043"
     Region          570..650
                     /region_name="Dimer_Tnp_hAT"
                     /note="hAT family C-terminal dimerization region;
                     pfam05699"
                     /db_xref="CDD:399013"
     CDS             1..695
                     /gene="ZBED1"
                     /coded_by="XM_054056351.1:184..2271"
                     /db_xref="GeneID:104063727"
ORIGIN      
        1 menkslegsp sdlklvahpr akskvwkyfg fdtnaegcil qwkkiycric maqiaysgnt
       61 snlsyhlekn hpdefcefvk snteqmreaf atafskikpe ssqqvvqdsl imktyqnyen
      121 kkhqeltsav islicegmyp asivdeptfk allrtvdpry elpsrkyfct kaipekysai
      181 reivlkelte vlwcgistdm wrsenqnrsy vtvavhflss ssanclavns rclktfevpe
      241 dntaetitrv lyetfiewgi nskvfgattd yskdivkacs lldipvqmpc lghtfnagiq
      301 qafqlpklcs llarcrklve yfqqstvamy mlsekqkqqn ilhcmlvsdr vswwgstlam
      361 lqrlkeqqfv iaavlvedsn nhhlmlease wntieglvel lqpfkqvaem msaskyptis
      421 mvkpllhmll nttlnikend lkeismakev iakelsttyq htpeidmfln vatfldpryk
      481 klpflsafer qqvenrvvee aksllekvke ntfrteekff avseeppvkk iiisstpppt
      541 svinnmlaei fcqtggvedq eewhaqiiee lsnfksqkvl glnedplkww sdrlalfpvl
      601 pkvlqkywci latrvfperl fgssanvvsa krnrlapahv deqiflyens rngseaeped
      661 edegewgleq eqifnlndsv nvnnnffnir dsgfv
//
LOCUS       XP_053912327             429 aa            linear   VRT 09-MAR-2023
DEFINITION  dehydrogenase/reductase SDR family member on chromosome X isoform
            X1 [Cuculus canorus].
ACCESSION   XP_053912327
VERSION     XP_053912327.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056352.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..429
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..429
                     /product="dehydrogenase/reductase SDR family member on
                     chromosome X isoform X1"
                     /calculated_mol_wt=46575
     Region          139..412
                     /region_name="retinol-DH_like_SDR_c_like"
                     /note="retinol dehydrogenase (retinol-DH), Light dependent
                     Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and
                     related proteins, classical (c) SDRs; cd05327"
                     /db_xref="CDD:212492"
     Site            order(146,148..151,170..172,197..199,225..227,246,
                     283..285,304,308,336..339,341..342)
                     /site_type="other"
                     /note="putative NAD(P) binding site [chemical binding]"
                     /db_xref="CDD:212492"
     Site            order(247,285,304,308)
                     /site_type="active"
                     /db_xref="CDD:212492"
     CDS             1..429
                     /gene="DHRSX"
                     /coded_by="XM_054056352.1:30..1319"
                     /db_xref="GeneID:104063725"
ORIGIN      
        1 mgrgwlrdrg eqpqprrgvr avraspapaa rpggtrrarp crpqgrpgha asaaggsraa
       61 rllpggvrgc rgalpapapp rplrcrdlgr gggcvrarea prgggprfss ssflcpltap
      121 aqtssrslpr ppvfptqngk vaivtggakg igyqtvkhla rlgmhviiag nsesegqeav
      181 rkiqeeiltg kveflycdla smksirqfvq rfrakdcplh vlvnnagvml vpekktedgf
      241 eehfglnylg hflltnllld alkqsgthsh nariitvssa thyvgklhln dlqsrcsysp
      301 hgayaqskla lvlftyrlqh lltangsyvt anvvdpgvvn tdlykhvcwv vkvvkwmtsw
      361 llfktpeega stsiyaavsp emegaggcyl yneertksad vaydeelqrr lwtesckmvg
      421 ifdessrvl
//
LOCUS       XP_053912328             334 aa            linear   VRT 09-MAR-2023
DEFINITION  dehydrogenase/reductase SDR family member on chromosome X isoform
            X2 [Cuculus canorus].
ACCESSION   XP_053912328
VERSION     XP_053912328.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056353.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..334
                     /product="dehydrogenase/reductase SDR family member on
                     chromosome X isoform X2"
                     /calculated_mol_wt=37230
     Region          44..317
                     /region_name="retinol-DH_like_SDR_c_like"
                     /note="retinol dehydrogenase (retinol-DH), Light dependent
                     Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and
                     related proteins, classical (c) SDRs; cd05327"
                     /db_xref="CDD:212492"
     Site            order(51,53..56,75..77,102..104,130..132,151,188..190,209,
                     213,241..244,246..247)
                     /site_type="other"
                     /note="putative NAD(P) binding site [chemical binding]"
                     /db_xref="CDD:212492"
     Site            order(152,190,209,213)
                     /site_type="active"
                     /db_xref="CDD:212492"
     CDS             1..334
                     /gene="DHRSX"
                     /coded_by="XM_054056353.1:150..1154"
                     /db_xref="GeneID:104063725"
ORIGIN      
        1 msllsvlvpl lrvyrigllv alhqlrrrlr prcrpapvfp tqngkvaivt ggakgigyqt
       61 vkhlarlgmh viiagnsese gqeavrkiqe eiltgkvefl ycdlasmksi rqfvqrfrak
      121 dcplhvlvnn agvmlvpekk tedgfeehfg lnylghfllt nllldalkqs gthshnarii
      181 tvssathyvg klhlndlqsr csysphgaya qsklalvlft yrlqhlltan gsyvtanvvd
      241 pgvvntdlyk hvcwvvkvvk wmtswllfkt peegastsiy aavspemega ggcylyneer
      301 tksadvayde elqrrlwtes ckmvgifdes srvl
//
LOCUS       XP_053912329             729 aa            linear   VRT 09-MAR-2023
DEFINITION  kelch-like protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912329
VERSION     XP_053912329.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056354.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..729
                     /product="kelch-like protein 1 isoform X1"
                     /calculated_mol_wt=80135
     Region          187..709
                     /region_name="PHA03098"
                     /note="kelch-like protein; Provisional"
                     /db_xref="CDD:222983"
     Region          477..520
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          524..568
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          571..614
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          618..668
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          671..715
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..729
                     /gene="KLHL1"
                     /coded_by="XM_054056354.1:529..2718"
                     /db_xref="GeneID:104054975"
ORIGIN      
        1 msgsgrkdfd vkhilrlrwk lfshpsggpa gggclppdsg fehwgpsqsr llksqdrgng
       61 vfwkksaspa ssssaatapn ggrpgppppr tvfyveslee eeaeaapggm evaqepekpl
      121 pppereeapr gggdgggrat gdgggrrlsg ashplpphcd mdscsseefy qavhhaeqtf
      181 rkmesylkqq qlcdviliag nrkipahrlv lssvsdyfaa mftsdvceak qeeikmegid
      241 pnalwdlvqf aytgclelke dtienllaaa cllqlpqvve vcchflmkll hpsnclgira
      301 fadaqgctel mkvahsytme nimevirnqe flllpadelh kllasddvnv pdeetifhal
      361 mmwvkydmqr rcndlsmlla yirlpllppq iladlenhal fkddlecqkl ileamkyhll
      421 perrtlmqsp rtkprkstvg tlyavggmdn nkgattieky dlrtniwiqa gvmngrrlqf
      481 gvaviddklf viggrdglkt lntvecynpk tkawtvlppm sthrhglgvt vlegpiyavg
      541 ghdgwsylnt verwdpqsqq wtfvasmsia rstvgvaaln gklysvggrd gssclssmey
      601 ydphtnkwnm capmckrrgg vgvatcdgfl yavgghdapa snhcsrlldy verydpktdt
      661 wtmvaplsmp rdavgvcllg dklyavggyd gqtylntmea ydpqtnewtq maslnigrag
      721 acvvvvkqp
//
LOCUS       XP_053912330             569 aa            linear   VRT 09-MAR-2023
DEFINITION  kelch-like protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912330
VERSION     XP_053912330.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056355.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..569
                     /product="kelch-like protein 1 isoform X2"
                     /calculated_mol_wt=63529
     Region          27..549
                     /region_name="PHA03098"
                     /note="kelch-like protein; Provisional"
                     /db_xref="CDD:222983"
     Region          317..360
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          364..408
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          411..454
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          458..508
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          511..555
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..569
                     /gene="KLHL1"
                     /coded_by="XM_054056355.1:165..1874"
                     /db_xref="GeneID:104054975"
ORIGIN      
        1 mdscsseefy qavhhaeqtf rkmesylkqq qlcdviliag nrkipahrlv lssvsdyfaa
       61 mftsdvceak qeeikmegid pnalwdlvqf aytgclelke dtienllaaa cllqlpqvve
      121 vcchflmkll hpsnclgira fadaqgctel mkvahsytme nimevirnqe flllpadelh
      181 kllasddvnv pdeetifhal mmwvkydmqr rcndlsmlla yirlpllppq iladlenhal
      241 fkddlecqkl ileamkyhll perrtlmqsp rtkprkstvg tlyavggmdn nkgattieky
      301 dlrtniwiqa gvmngrrlqf gvaviddklf viggrdglkt lntvecynpk tkawtvlppm
      361 sthrhglgvt vlegpiyavg ghdgwsylnt verwdpqsqq wtfvasmsia rstvgvaaln
      421 gklysvggrd gssclssmey ydphtnkwnm capmckrrgg vgvatcdgfl yavgghdapa
      481 snhcsrlldy verydpktdt wtmvaplsmp rdavgvcllg dklyavggyd gqtylntmea
      541 ydpqtnewtq maslnigrag acvvvvkqp
//
LOCUS       XP_009555519             206 aa            linear   VRT 09-MAR-2023
DEFINITION  protein CREG1 [Cuculus canorus].
ACCESSION   XP_009555519
VERSION     XP_009555519.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557224.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555519.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..206
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..206
                     /product="protein CREG1"
                     /calculated_mol_wt=22457
     Region          35..203
                     /region_name="Pyrid_oxidase_2"
                     /note="Pyridoxamine 5'-phosphate oxidase; pfam13883"
                     /db_xref="CDD:404723"
     CDS             1..206
                     /gene="CREG1"
                     /coded_by="XM_009557224.2:43..663"
                     /db_xref="GeneID:104056018"
ORIGIN      
        1 mrrcrgasgm mgaplrcaal alllsllptg aaaipppeea armarfvlhn cdwgalatls
       61 aqsglrgrpf anifslsdgp pgsrggsgvp ylyltdmeis vqdleinsna sltvslaqtp
      121 yckkhrydpq nplcahiifc gsvvkvndse vglakkalfs rhpemeswpk dhnwffakfn
      181 itniwvldyf gglkivtpee yynvkp
//
LOCUS       XP_053912331             617 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: interleukin-1 receptor type 1 [Cuculus
            canorus].
ACCESSION   XP_053912331
VERSION     XP_053912331.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056356.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..617
                     /product="LOW QUALITY PROTEIN: interleukin-1 receptor type
                     1"
                     /calculated_mol_wt=70447
     Region          79..172
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          96..100
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409414"
     Region          112..116
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409414"
     Region          137..141
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409414"
     Region          151..156
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409414"
     Region          164..167
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409414"
     Region          184..274
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          196..200
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          215..218
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          234..238
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          248..253
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          265..268
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          281..382
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          299..303
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409526"
     Region          312..316
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409526"
     Region          349..353
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409526"
     Region          364..369
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409526"
     Region          377..380
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409526"
     Region          441..598
                     /region_name="TIR"
                     /note="TIR domain; pfam01582"
                     /db_xref="CDD:396246"
     CDS             1..617
                     /gene="LOC104056641"
                     /coded_by="XM_054056356.1:1245..3098"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /db_xref="GeneID:104056641"
ORIGIN      
        1 mdffslwkiw aeitaaefrp ewqnstgqlq aqdvdkmagk kekfsclswq nvgnmtaktl
       61 fscnittafl sliiaencea ydvmlrhslv pdgqplaikc slennlksgd ynitwykvgn
      121 etavprdnls rihqqknliw flpatledsg dyecvirnlt sykkmctkvt vfervdgvcl
      181 nerfaveevi ftlssakvvc phldyfrnqk siqpvrwykd cqlvegkrft flnsdliifn
      241 vtvrdrgnyt cettytyngk qynisrdiil tvevsppkkp peisyprnns ievelgsqvt
      301 vdcnttgadg fevfwtsngv yidvfyvgri faspyeeeps ydgrpvhsvk liisevnsed
      361 yeqpfvcqas nafgqvasyi ilkrrvpdik rrltggllsl liltlialii ykifkidlvl
      421 wyrnsvcafa snedgkiyda yvlytkssgn rsfyrletfv hrilpdvleq qcgynlfilg
      481 rddlpgeavv svadetlqqs rrlmiilgsi tsscspledt seeqltmyna lirdgikvil
      541 iemdevqdyt smpesiryik qkhgtiqwkg dfsdrscsan trfwkkvryq mpsrkkvsys
      601 egyllpltlk nsaakgs
//
LOCUS       XP_053912333             536 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-1 receptor-like 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912333
VERSION     XP_053912333.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056358.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..536
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..536
                     /product="interleukin-1 receptor-like 1 isoform X1"
                     /calculated_mol_wt=61900
     Region          22..316
                     /region_name="PHA02785"
                     /note="IL-beta-binding protein; Provisional"
                     /db_xref="CDD:165149"
     Region          113..201
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          126..130
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          141..145
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          161..165
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          175..180
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          192..195
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          376..523
                     /region_name="TIR"
                     /note="TIR domain; pfam01582"
                     /db_xref="CDD:396246"
     CDS             1..536
                     /gene="IL1RL1"
                     /coded_by="XM_054056358.1:412..2022"
                     /db_xref="GeneID:104056640"
ORIGIN      
        1 mmghvhlifl safllvsvts etfdamegea ftikcprwsp svkitwyhtv tnkmipteee
       61 gsqifslnqf lwflptsreh sgdytcvihf snnstklynm svqvhpykqg vcfpsqiryp
      121 ndtgrgkivc ptidnyknat iiqwyknckp lqgeryfmae nyvyisnpgk eddgyytcrf
      181 tyihkgnvfn vsatrifisk vkhspirpqi lvpkdkdvie velgaplslk cqarlgikkq
      241 plavvtwdvd nisvkslefs rfhektrsfe grhqeyyket tlhiseikne dlqanftcvv
      301 vnemcntrat vtlklkaqce vgipnvlliv gslvlliaia vsvilyrcfr vdivllyrei
      361 fqpysvkddg kiydayviyp kthtnedgfv ehfvyqvmpd ilenkcgykl ciygrdiypg
      421 edtasaiekr iqrsrrliil lthqlincke paydqhialy naliqndtkv illemekigs
      481 yeklqeslrf iirqqgtikw keqravhpqp snskfwkhvr yhmplilkss ystnag
//
LOCUS       XP_053912334             536 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-1 receptor-like 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912334
VERSION     XP_053912334.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056359.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..536
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..536
                     /product="interleukin-1 receptor-like 1 isoform X1"
                     /calculated_mol_wt=61900
     Region          22..316
                     /region_name="PHA02785"
                     /note="IL-beta-binding protein; Provisional"
                     /db_xref="CDD:165149"
     Region          113..201
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          126..130
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          141..145
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          161..165
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          175..180
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          192..195
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          376..523
                     /region_name="TIR"
                     /note="TIR domain; pfam01582"
                     /db_xref="CDD:396246"
     CDS             1..536
                     /gene="IL1RL1"
                     /coded_by="XM_054056359.1:323..1933"
                     /db_xref="GeneID:104056640"
ORIGIN      
        1 mmghvhlifl safllvsvts etfdamegea ftikcprwsp svkitwyhtv tnkmipteee
       61 gsqifslnqf lwflptsreh sgdytcvihf snnstklynm svqvhpykqg vcfpsqiryp
      121 ndtgrgkivc ptidnyknat iiqwyknckp lqgeryfmae nyvyisnpgk eddgyytcrf
      181 tyihkgnvfn vsatrifisk vkhspirpqi lvpkdkdvie velgaplslk cqarlgikkq
      241 plavvtwdvd nisvkslefs rfhektrsfe grhqeyyket tlhiseikne dlqanftcvv
      301 vnemcntrat vtlklkaqce vgipnvlliv gslvlliaia vsvilyrcfr vdivllyrei
      361 fqpysvkddg kiydayviyp kthtnedgfv ehfvyqvmpd ilenkcgykl ciygrdiypg
      421 edtasaiekr iqrsrrliil lthqlincke paydqhialy naliqndtkv illemekigs
      481 yeklqeslrf iirqqgtikw keqravhpqp snskfwkhvr yhmplilkss ystnag
//
LOCUS       XP_053912335             521 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-1 receptor-like 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912335
VERSION     XP_053912335.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056360.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..521
                     /product="interleukin-1 receptor-like 1 isoform X2"
                     /calculated_mol_wt=60288
     Region          5..301
                     /region_name="PHA02785"
                     /note="IL-beta-binding protein; Provisional"
                     /db_xref="CDD:165149"
     Region          98..186
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          111..115
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          126..130
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          146..150
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          160..165
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          177..180
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          361..508
                     /region_name="TIR"
                     /note="TIR domain; pfam01582"
                     /db_xref="CDD:396246"
     CDS             1..521
                     /gene="IL1RL1"
                     /coded_by="XM_054056360.1:502..2067"
                     /db_xref="GeneID:104056640"
ORIGIN      
        1 mntkfqtvda megeaftikc prwspsvkit wyhtvtnkmi pteeegsqif slnqflwflp
       61 tsrehsgdyt cvihfsnnst klynmsvqvh pykqgvcfps qirypndtgr gkivcptidn
      121 yknatiiqwy knckplqger yfmaenyvyi snpgkeddgy ytcrftyihk gnvfnvsatr
      181 ifiskvkhsp irpqilvpkd kdvievelga plslkcqarl gikkqplavv twdvdnisvk
      241 slefsrfhek trsfegrhqe yykettlhis eiknedlqan ftcvvvnemc ntratvtlkl
      301 kaqcevgipn vllivgslvl liaiavsvil yrcfrvdivl lyreifqpys vkddgkiyda
      361 yviypkthtn edgfvehfvy qvmpdilenk cgyklciygr diypgedtas aiekriqrsr
      421 rliillthql inckepaydq hialynaliq ndtkvillem ekigsyeklq eslrfiirqq
      481 gtikwkeqra vhpqpsnskf wkhvryhmpl ilkssystna g
//
LOCUS       XP_053912336             488 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-1 receptor-like 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912336
VERSION     XP_053912336.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056361.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..488
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..488
                     /product="interleukin-1 receptor-like 1 isoform X3"
                     /calculated_mol_wt=56513
     Region          22..316
                     /region_name="PHA02785"
                     /note="IL-beta-binding protein; Provisional"
                     /db_xref="CDD:165149"
     Region          113..201
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          126..130
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          141..145
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          161..165
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          175..180
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          192..195
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          328..475
                     /region_name="TIR"
                     /note="TIR domain; pfam01582"
                     /db_xref="CDD:396246"
     CDS             1..488
                     /gene="IL1RL1"
                     /coded_by="XM_054056361.1:412..1878"
                     /db_xref="GeneID:104056640"
ORIGIN      
        1 mmghvhlifl safllvsvts etfdamegea ftikcprwsp svkitwyhtv tnkmipteee
       61 gsqifslnqf lwflptsreh sgdytcvihf snnstklynm svqvhpykqg vcfpsqiryp
      121 ndtgrgkivc ptidnyknat iiqwyknckp lqgeryfmae nyvyisnpgk eddgyytcrf
      181 tyihkgnvfn vsatrifisk vkhspirpqi lvpkdkdvie velgaplslk cqarlgikkq
      241 plavvtwdvd nisvkslefs rfhektrsfe grhqeyyket tlhiseikne dlqanftcvv
      301 vnemcntrat vtlklkaqce dgkiydayvi ypkthtnedg fvehfvyqvm pdilenkcgy
      361 klciygrdiy pgedtasaie kriqrsrrli illthqlinc kepaydqhia lynaliqndt
      421 kvillemeki gsyeklqesl rfiirqqgti kwkeqravhp qpsnskfwkh vryhmplilk
      481 ssystnag
//
LOCUS       XP_053912337             355 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-1 receptor-like 1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053912337
VERSION     XP_053912337.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056362.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..355
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..355
                     /product="interleukin-1 receptor-like 1 isoform X4"
                     /calculated_mol_wt=40816
     Region          22..316
                     /region_name="PHA02785"
                     /note="IL-beta-binding protein; Provisional"
                     /db_xref="CDD:165149"
     Region          113..201
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          126..130
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          141..145
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          161..165
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          175..180
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          192..195
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     CDS             1..355
                     /gene="IL1RL1"
                     /coded_by="XM_054056362.1:412..1479"
                     /db_xref="GeneID:104056640"
ORIGIN      
        1 mmghvhlifl safllvsvts etfdamegea ftikcprwsp svkitwyhtv tnkmipteee
       61 gsqifslnqf lwflptsreh sgdytcvihf snnstklynm svqvhpykqg vcfpsqiryp
      121 ndtgrgkivc ptidnyknat iiqwyknckp lqgeryfmae nyvyisnpgk eddgyytcrf
      181 tyihkgnvfn vsatrifisk vkhspirpqi lvpkdkdvie velgaplslk cqarlgikkq
      241 plavvtwdvd nisvkslefs rfhektrsfe grhqeyyket tlhiseikne dlqanftcvv
      301 vnemcntrat vtlklkaqce dmlkhqgpwk emsrvltgis flrantgkyk vkcvl
//
LOCUS       XP_053912338             323 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-1 receptor-like 1 isoform X5 [Cuculus canorus].
ACCESSION   XP_053912338
VERSION     XP_053912338.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056363.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..323
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..323
                     /product="interleukin-1 receptor-like 1 isoform X5"
                     /calculated_mol_wt=37097
     Region          22..316
                     /region_name="PHA02785"
                     /note="IL-beta-binding protein; Provisional"
                     /db_xref="CDD:165149"
     Region          113..201
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          126..130
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          141..145
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          161..165
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          175..180
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          192..195
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     CDS             1..323
                     /gene="IL1RL1"
                     /coded_by="XM_054056363.1:411..1382"
                     /db_xref="GeneID:104056640"
ORIGIN      
        1 mmghvhlifl safllvsvts etfdamegea ftikcprwsp svkitwyhtv tnkmipteee
       61 gsqifslnqf lwflptsreh sgdytcvihf snnstklynm svqvhpykqg vcfpsqiryp
      121 ndtgrgkivc ptidnyknat iiqwyknckp lqgeryfmae nyvyisnpgk eddgyytcrf
      181 tyihkgnvfn vsatrifisk vkhspirpqi lvpkdkdvie velgaplslk cqarlgikkq
      241 plavvtwdvd nisvkslefs rfhektrsfe grhqeyyket tlhiseikne dlqanftcvv
      301 vnemcntrat vtlklkaqce glq
//
LOCUS       XP_053912339             322 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-1 receptor-like 1 isoform X6 [Cuculus canorus].
ACCESSION   XP_053912339
VERSION     XP_053912339.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056364.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..322
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..322
                     /product="interleukin-1 receptor-like 1 isoform X6"
                     /calculated_mol_wt=37013
     Region          22..316
                     /region_name="PHA02785"
                     /note="IL-beta-binding protein; Provisional"
                     /db_xref="CDD:165149"
     Region          113..201
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          126..130
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          141..145
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          161..165
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          175..180
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          192..195
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     CDS             1..322
                     /gene="IL1RL1"
                     /coded_by="XM_054056364.1:411..1379"
                     /db_xref="GeneID:104056640"
ORIGIN      
        1 mmghvhlifl safllvsvts etfdamegea ftikcprwsp svkitwyhtv tnkmipteee
       61 gsqifslnqf lwflptsreh sgdytcvihf snnstklynm svqvhpykqg vcfpsqiryp
      121 ndtgrgkivc ptidnyknat iiqwyknckp lqgeryfmae nyvyisnpgk eddgyytcrf
      181 tyihkgnvfn vsatrifisk vkhspirpqi lvpkdkdvie velgaplslk cqarlgikkq
      241 plavvtwdvd nisvkslefs rfhektrsfe grhqeyyket tlhiseikne dlqanftcvv
      301 vnemcntrat vtlklkaqce dv
//
LOCUS       XP_009556207             567 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-1 receptor type 1 [Cuculus canorus].
ACCESSION   XP_009556207
VERSION     XP_009556207.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557912.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556207.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..567
                     /product="interleukin-1 receptor type 1"
                     /calculated_mol_wt=64944
     Region          30..123
                     /region_name="Ig1_IL1R_like"
                     /note="First immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05756"
                     /db_xref="CDD:409414"
     Region          31..34
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409414"
     Site            order(32,34,35..39)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409414"
     Region          37..41
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409414"
     Region          45..50
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409414"
     Region          63..67
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409414"
     Region          72..74
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409414"
     Region          82..86
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409414"
     Region          88..92
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409414"
     Region          101..109
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409414"
     Region          112..123
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409414"
     Region          135..229
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          147..151
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          165..169
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          189..193
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          203..208
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          220..223
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          236..336
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          254..258
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409526"
     Region          267..272
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409526"
     Region          303..307
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409526"
     Region          318..323
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409526"
     Region          331..334
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409526"
     Region          394..549
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..567
                     /gene="LOC104056642"
                     /coded_by="XM_009557912.2:731..2434"
                     /db_xref="GeneID:104056642"
ORIGIN      
        1 mekksslqqk mtslilligh lillipliga eecvicdyfv lvgeptaisc piitlpvlhs
       61 dynltwykng satpvtterd srihqqegll wfipavleds glyecdvrnl nrsnkktinl
      121 tvfkndnglc fngkmkyeqk vvstntgkii cpdlehfkne ddqpevhwyk eckpgfledk
      181 rlllaegena vlirnvsaqd rgnytcrmvy tymgkqynvs rtmslevker ppqmrpefiy
      241 pknntievel gshvvmecnv ssginglipf wqvndedvds fdstyreqfy eegmphgiav
      301 sgtkfniskv kvkdyahkff chviygsrqf tayiklerpa qniqvyligg gvsliflvff
      361 alliykifki divlwyrdsc hpflgkkvsd gkiydayvly pknrasylhs sdifalkilp
      421 evlerqcgyn lfifgrddlp geavisvade kirqsrrvii vlvpepscys vtedvsekhl
      481 amynaliqvg ikvilielek iqdyanmpea ikyikqkhga irwkgdfles sysastrfwk
      541 kvryhmpsrk smsslglhll trdsnsp
//
LOCUS       XP_053912341             341 aa            linear   VRT 09-MAR-2023
DEFINITION  testis-specific gene A8 protein-like isoform X1 [Cuculus canorus].
ACCESSION   XP_053912341
VERSION     XP_053912341.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056366.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..341
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..341
                     /product="testis-specific gene A8 protein-like isoform X1"
                     /calculated_mol_wt=36493
     CDS             1..341
                     /gene="LOC104054887"
                     /coded_by="XM_054056366.1:23..1048"
                     /db_xref="GeneID:104054887"
ORIGIN      
        1 mprgrrrsrr rrragtaapl tlgtalagrr eegrsrsprd rcgiaetrwv lgavapgsrl
       61 glpglealaa gprggsppwa appllqvpaa aprrdgsepp agapaalavl rlqpgaegsa
      121 raagatprlr tvyvnprwle rqaalgaaaa aaataspcae aasagpaaaq aeseapatpy
      181 vglrrplgyk lakatkeriw rgefidlfsl lhtelapehg prpgdtldqw vsaflvyasv
      241 lcekhparcg amfkyldtir klhatyggts wrsydedfrr raakdpnlpw gdvdldlwmk
      301 wmaplkslis rhdedeteas patppppqsq spkkeeksqt p
//
LOCUS       XP_053912342             341 aa            linear   VRT 09-MAR-2023
DEFINITION  testis-specific gene A8 protein-like isoform X2 [Cuculus canorus].
ACCESSION   XP_053912342
VERSION     XP_053912342.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056367.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..341
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..341
                     /product="testis-specific gene A8 protein-like isoform X2"
                     /calculated_mol_wt=36485
     CDS             1..341
                     /gene="LOC104054887"
                     /coded_by="XM_054056367.1:23..1048"
                     /db_xref="GeneID:104054887"
ORIGIN      
        1 mprgrrrsrr rrragtaapl tlgtalagrr eegrsrsprd rcgiaetrwv lgavapgsrl
       61 glpglealaa gprggsppwa appllqvpaa aprrdgsepp agapaalavl rlqpgaegsa
      121 raagatprlr tvyvnprwle rqaalgaaaa aaataspcae aasagpaaaq aeseapatpy
      181 vglrrplgyk lakatkeriw rgefidlfsl lhtelapehg prpgdtldqw vsaflvyasv
      241 lcekhparcg amfkyldtir klhatyggts wrsydedfrr raakdpnlpw gdvdldlwmk
      301 wmaplkslis rhdedeteas patppppqsq spkkeeksqs c
//
LOCUS       XP_053912343             459 aa            linear   VRT 09-MAR-2023
DEFINITION  proline and serine-rich protein 2 [Cuculus canorus].
ACCESSION   XP_053912343
VERSION     XP_053912343.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056368.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..459
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..459
                     /product="proline and serine-rich protein 2"
                     /calculated_mol_wt=49926
     Region          <420..457
                     /region_name="SARG"
                     /note="Specifically androgen-regulated gene protein;
                     pfam15385"
                     /db_xref="CDD:464692"
     CDS             1..459
                     /gene="PROSER2"
                     /coded_by="XM_054056368.1:226..1605"
                     /db_xref="GeneID:104066306"
ORIGIN      
        1 mprnllsdsp ematkispeh trgsmesggs venpgsqarc rnlalddesl kyltheeqdv
       61 lmffeetida leddleepvl hdsgihcqsa rsteenvssh setediidlv qstpessdhe
      121 gpssrdaepv ldatwrtesp kpavpadist httvpppsts etlplppppp ppvqhpkllr
      181 siptplimaq kiseqqmesk vrfpgavkeg nserkktpva ngdhcvapkh ppapapklhr
      241 fpsninitnv sgkefnetis kaavnvqerr aqvlaningg allaaeleek lqkndflsrn
      301 rssslrdlss eqtryealtk lglvkgkpaq dqadhapstq qldaqpkqad avpngyqnih
      361 eilksepspf lpmgktvtik peaalaankv ssapqntaks cndykqpsln ldmrrrsgsl
      421 prpsgfrsqg itvkfsgrgs teearrealr klgllketa
//
LOCUS       XP_053912344             532 aa            linear   VRT 09-MAR-2023
DEFINITION  nucleolus and neural progenitor protein isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912344
VERSION     XP_053912344.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056369.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..532
                     /product="nucleolus and neural progenitor protein isoform
                     X1"
                     /calculated_mol_wt=58918
     Region          8..193
                     /region_name="DUF4477"
                     /note="Domain of unknown function (DUF4477); pfam14780"
                     /db_xref="CDD:464313"
     CDS             1..532
                     /gene="NEPRO"
                     /coded_by="XM_054056369.1:195..1793"
                     /db_xref="GeneID:104055848"
ORIGIN      
        1 maapeaawnr ldvpwpassa tvavanthpa arwvlklrrr csvaskrlsg tslaaegrvl
       61 ravlyvyhsr llrhrpylal qqveqclkrl wkmnlvdcie tlvglipkkn tshaeclvps
      121 qpmletvalk vlggcklilr lldccckafl lsvrhlcsee filmntvasg llsrlwihyr
      181 cvlrslmsly dvlstslqlv setqqmpyik gftfpsdisn flgvnissev kkqkarmltk
      241 rtstnwlnkv fptmpeaasd vgkkrssvty rsavkkhsip cpadigepvl mtgasrgkhl
      301 gfdvksllrp srslahesvs iastpfktts aslssriakf qhtgslvqmv qtatsfgels
      361 ealrkailwc kankfksaay flrnkllksn rlhhveaqgc slkkklccvk tsvrkyflyg
      421 sqntcwpkny lgarfcrrri ksstclkktl rtvrqkpseh fgvcentasl ilpayqdgtl
      481 tgeghsyadt asvklstvgt pkqlllegss gsvwkeaten mdidsifaav gv
//
LOCUS       XP_053912345             434 aa            linear   VRT 09-MAR-2023
DEFINITION  nucleolus and neural progenitor protein isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912345
VERSION     XP_053912345.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056370.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..434
                     /product="nucleolus and neural progenitor protein isoform
                     X2"
                     /calculated_mol_wt=47964
     Region          <10..95
                     /region_name="RMP1_RBD"
                     /note="RNA binding domain of Saccharomyces cerevisiae
                     RNase MRP protein 1 (RMP1) and similar proteins; cl20703"
                     /db_xref="CDD:473480"
     CDS             1..434
                     /gene="NEPRO"
                     /coded_by="XM_054056370.1:146..1450"
                     /db_xref="GeneID:104055848"
ORIGIN      
        1 missplyqhr kntshaeclv psqpmletva lkvlggckli lrlldcccka fllsvrhlcs
       61 eefilmntva sgllsrlwih yrcvlrslms lydvlstslq lvsetqqmpy ikgftfpsdi
      121 snflgvniss evkkqkarml tkrtstnwln kvfptmpeaa sdvgkkrssv tyrsavkkhs
      181 ipcpadigep vlmtgasrgk hlgfdvksll rpsrslahes vsiastpfkt tsaslssria
      241 kfqhtgslvq mvqtatsfge lsealrkail wckankfksa ayflrnkllk snrlhhveaq
      301 gcslkkklcc vktsvrkyfl ygsqntcwpk nylgarfcrr riksstclkk tlrtvrqkps
      361 ehfgvcenta slilpayqdg tltgeghsya dtasvklstv gtpkqllleg ssgsvwkeat
      421 enmdidsifa avgv
//
LOCUS       XP_053912346             174 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription initiation factor TFIID subunit 13 [Cuculus canorus].
ACCESSION   XP_053912346
VERSION     XP_053912346.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056371.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..174
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..174
                     /product="transcription initiation factor TFIID subunit
                     13"
                     /calculated_mol_wt=18914
     Region          80..169
                     /region_name="TFIID-18kDa"
                     /note="Transcription initiation factor IID, 18kD subunit;
                     pfam02269"
                     /db_xref="CDD:190265"
     Site            order(82,85..86,88..95,99..100,102..103,106..107,109..120,
                     123)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:467023"
     CDS             1..174
                     /gene="TAF13"
                     /coded_by="XM_054056371.1:60..584"
                     /db_xref="GeneID:104055847"
ORIGIN      
        1 maavwrprpa raaapslgga ahpqrprpgw csgtgssaap agsarraaaa madeeedgpf
       61 eedaeeaggg ldggqgkrkr lfskelrcmm ygfgddqnpy tesvdiledl viefitemth
      121 kamsigrqgr vqvedivfli rkdprkfarv kdlltmneel krarkafdea nygs
//
LOCUS       XP_053912347             699 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 800 [Cuculus canorus].
ACCESSION   XP_053912347
VERSION     XP_053912347.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056372.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..699
                     /product="zinc finger protein 800"
                     /calculated_mol_wt=78726
     Region          360..386
                     /region_name="zf-C2H2_11"
                     /note="zinc-finger C2H2-type; pfam16622"
                     /db_xref="CDD:465205"
     Region          394..512
                     /region_name="zf-C2H2_assoc2"
                     /note="Unstructured region upstream of a zinc-finger;
                     pfam16624"
                     /db_xref="CDD:465207"
     Region          515..535
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275370"
     Site            order(520,522,524,526..527,530..531,534,553,555..557,
                     559..560,564,567)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275370"
     Region          548..567
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275370"
     Region          645..667
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275369"
     Region          645..667
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Site            order(645,652,654..656,658..659,663,666)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275369"
     CDS             1..699
                     /gene="ZNF800"
                     /coded_by="XM_054056372.1:135..2234"
                     /db_xref="GeneID:104055282"
ORIGIN      
        1 mplrdkccqt dhhhhgccep vhllepgdpp llqqplqtsk sgiqqiiecf rsgtkqlkhi
       61 llkdvdtife cklcrslfrg lpnlithkkf ycppslqmdd nlpdisdkqs qaindlleai
      121 yprvdkqeyv iklkpiesnq navfqyvsrt dspdentess stpdqapiqi qepnteqskt
      181 vsasapvpag etvelppadp atnkvvptpe eeppavnpes dsmdnfdlgh qlicclcrke
      241 fhsrrsvrrh irkvhkekme elkkyietkk kpnqcsmkgr nknvlvalgr scpvcyksfa
      301 tkanvrrhfd evhrglrrds itpdiatkpg qplfldtvsa kksfktrkqk ssskaeynlt
      361 ackcllckrk yssqimlkrh mqivhkitls gknskrekgp nntangteit vkvepadsve
      421 ppppsialsl qnelkgtnns nekkstpsaq knklkqdaen pkstsksttk stsksttkst
      481 sksaskstna saaggqqknr kpklsagfdf kqlycklckr qftskqnltk hielhtdgnn
      541 iyvkyyrcpl csyetrrkrd virhitvvhk ksprylgkit asleiraikk pidlvlnkvt
      601 krgpqrdetk qivskqdvts nspnkkyega dvgievkvtk nfslhrcnkc gkafarkafl
      661 ehhkkthkan vshspeenkt kgrstrskav vclyfrmtn
//
LOCUS       XP_053912349             240 aa            linear   VRT 09-MAR-2023
DEFINITION  phosducin-like protein 3 [Cuculus canorus].
ACCESSION   XP_053912349
VERSION     XP_053912349.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056374.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..240
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..240
                     /product="phosducin-like protein 3"
                     /calculated_mol_wt=27490
     Region          8..203
                     /region_name="Phd_like_VIAF"
                     /note="Phosducin (Phd)-like family, Viral inhibitor of
                     apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF
                     is a Phd-like protein that functions in caspase activation
                     during apoptosis. It was identified as an IAP binding
                     protein through a screen of a human...; cd02988"
                     /db_xref="CDD:239286"
     Site            order(8,11..14,17,19..20,22,76,80,171,174..178,201..203)
                     /site_type="other"
                     /note="putative G protein beta interface [polypeptide
                     binding]"
                     /db_xref="CDD:239286"
     CDS             1..240
                     /gene="PDCL3"
                     /coded_by="XM_054056374.1:201..923"
                     /db_xref="GeneID:104056699"
ORIGIN      
        1 mqdpnedtew ndilrkkgil pskenleeke rakeeeqlai lqkslvktye dmtleeleen
       61 edefneedek aiemyrqqrl aemkaaqmkn kfgevleisg kdyvqevtka gkgiwvvlhl
      121 ykqgiplcal inqhmsglak kfrdvkfika isttcipnyp dknlptifvy legdikaqfi
      181 gplvfggmnl trdelewkis esgaiktdle enprkqiqdq lmssirtcvp argesdsedd
//
LOCUS       XP_053912350             382 aa            linear   VRT 09-MAR-2023
DEFINITION  mitogen-activated protein kinase 11 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912350
VERSION     XP_053912350.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056375.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..382
                     /product="mitogen-activated protein kinase 11 isoform X1"
                     /calculated_mol_wt=43952
     Region          7..370
                     /region_name="STKc_p38beta"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     p38beta Mitogen-Activated Protein Kinase (also called
                     MAPK11); cd07878"
                     /db_xref="CDD:143383"
     Site            order(29..32,34,36..37,71,73,90,95,104,106,124,126..129,
                     132,134..135,170,172,174..175,177,187..188,190..191,200,
                     202..205,207,245)
                     /site_type="active"
                     /db_xref="CDD:143383"
     Site            order(29..30,34,36..37,71,73,95,104,106,124,126..129,132,
                     170,172,174..175,187..188,190)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:143383"
     Site            order(90,134,170,172,191,200,202..205,207,245)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:143383"
     Site            order(131,136,145..146,149,178..182,331)
                     /site_type="other"
                     /note="KIM docking site [polypeptide binding]"
                     /db_xref="CDD:143383"
     Site            187..207
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:143383"
     Site            order(211..212,215,217,219..221,256,262,266,269,279,
                     311..314)
                     /site_type="lipid-binding"
                     /note="lipid binding site [chemical binding]"
                     /db_xref="CDD:143383"
     CDS             1..382
                     /gene="MAPK11"
                     /coded_by="XM_054056375.1:51..1199"
                     /db_xref="GeneID:104055296"
ORIGIN      
        1 mserggfyrq elnktvwevp qryqnltpvg sgaygsvcsk sveefvsggc vlahfidifs
       61 aydtktrqkv avkklsrpfq sliharrtyr elrllkhmkh enviglldvf tpatsienfn
      121 evylvtnlmg adlnnivkcq kltddhiqfl iyqllrglky ihsagiihrd lkpsnlavne
      181 dcelrildfg larqtddemt gyvatrwyra peimlnwmhy nqtvdiwsvg cimaellkgk
      241 alfpgndyid qlkrimevvg tpcsellkki sseharkyie slphmpqqdl kvvfrganpl
      301 avdllekmli ldsdkritas ealahpyfvq yhdpddepea elydesienk ertidewkel
      361 tyeevisfkp pdlkmdslei eq
//
LOCUS       XP_053912351             361 aa            linear   VRT 09-MAR-2023
DEFINITION  mitogen-activated protein kinase 11 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912351
VERSION     XP_053912351.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056376.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..361
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..361
                     /product="mitogen-activated protein kinase 11 isoform X2"
                     /calculated_mol_wt=41685
     Region          7..349
                     /region_name="STKc_p38beta"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     p38beta Mitogen-Activated Protein Kinase (also called
                     MAPK11); cd07878"
                     /db_xref="CDD:143383"
     Site            order(29..32,34,36..37,50,52,69,74,83,85,103,105..108,111,
                     113..114,149,151,153..154,156,166..167,169..170,179,
                     181..184,186,224)
                     /site_type="active"
                     /db_xref="CDD:143383"
     Site            order(29..30,34,36..37,50,52,74,83,85,103,105..108,111,
                     149,151,153..154,166..167,169)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:143383"
     Site            order(69,113,149,151,170,179,181..184,186,224)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:143383"
     Site            order(110,115,124..125,128,157..161,310)
                     /site_type="other"
                     /note="KIM docking site [polypeptide binding]"
                     /db_xref="CDD:143383"
     Site            166..186
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:143383"
     Site            order(190..191,194,196,198..200,235,241,245,248,258,
                     290..293)
                     /site_type="lipid-binding"
                     /note="lipid binding site [chemical binding]"
                     /db_xref="CDD:143383"
     CDS             1..361
                     /gene="MAPK11"
                     /coded_by="XM_054056376.1:51..1136"
                     /db_xref="GeneID:104055296"
ORIGIN      
        1 mserggfyrq elnktvwevp qryqnltpvg sgaygsvcsa ydtktrqkva vkklsrpfqs
       61 liharrtyre lrllkhmkhe nviglldvft patsienfne vylvtnlmga dlnnivkcqk
      121 ltddhiqfli yqllrglkyi hsagiihrdl kpsnlavned celrildfgl arqtddemtg
      181 yvatrwyrap eimlnwmhyn qtvdiwsvgc imaellkgka lfpgndyidq lkrimevvgt
      241 pcsellkkis seharkyies lphmpqqdlk vvfrganpla vdllekmlil dsdkritase
      301 alahpyfvqy hdpddepeae lydesienke rtidewkelt yeevisfkpp dlkmdsleie
      361 q
//
LOCUS       XP_053912352             361 aa            linear   VRT 09-MAR-2023
DEFINITION  mitogen-activated protein kinase 12 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912352
VERSION     XP_053912352.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056377.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..361
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..361
                     /product="mitogen-activated protein kinase 12 isoform X1"
                     /calculated_mol_wt=41729
     Region          8..350
                     /region_name="STKc_p38gamma"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     p38gamma Mitogen-Activated Protein Kinase (also called
                     MAPK12); cd07880"
                     /db_xref="CDD:143385"
     Site            order(30..33,35,37..38,51,53,70,75,84,86,104,106..109,112,
                     114..115,150,152,154..155,157,167..168,170..171,180,
                     182..185,187,225)
                     /site_type="active"
                     /db_xref="CDD:143385"
     Site            order(30..31,35,37..38,51,53,75,84,86,104,106..109,112,
                     150,152,154..155,167..168,170)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:143385"
     Site            order(70,114,150,152,171,180,182..185,187,225)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:143385"
     Site            order(111,116,125..126,129,158..162,311)
                     /site_type="other"
                     /note="KIM docking site [polypeptide binding]"
                     /db_xref="CDD:143385"
     Site            167..187
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:143385"
     Site            order(191..192,195,197,199..201,236,242,246,249,259,
                     291..294)
                     /site_type="lipid-binding"
                     /note="lipid binding site [chemical binding]"
                     /db_xref="CDD:143385"
     CDS             1..361
                     /gene="MAPK12"
                     /coded_by="XM_054056377.1:63..1148"
                     /db_xref="GeneID:104055295"
ORIGIN      
        1 msspkngfyr qditktlwev rdryrdlqpv gsgaygavcs avdgrsgtkv aikklyrpfq
       61 selfakrayr elrllkhmkh envigildvf tpdltlekfn dfylvmpfmg tdlskimkhe
      121 kltedriqfl vyqmlkglky ihssgiihrd lkpgnlavne dcelkildfg larhtdsemt
      181 gyvvtrwyra pevilnwmhy tqtvdiwsvg cimaemitgr plfkgndhld qlteimkitg
      241 tptqdfvqkl qsqdaknyik slpkvqkkdf acilkyanpl avnllekmlv ldaekrvtaa
      301 ealmhpyfep ihdpeeeiea ekyddtfdnm dlpldewkri tykeilnfkp pqtsesketa
      361 v
//
LOCUS       XP_053912354             293 aa            linear   VRT 09-MAR-2023
DEFINITION  mitogen-activated protein kinase 12 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912354
VERSION     XP_053912354.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056379.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..293
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..293
                     /product="mitogen-activated protein kinase 12 isoform X2"
                     /calculated_mol_wt=33847
     Region          <13..282
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     CDS             1..293
                     /gene="MAPK12"
                     /coded_by="XM_054056379.1:167..1048"
                     /db_xref="GeneID:104055295"
ORIGIN      
        1 mrmamvslvv fvqevigild vftpdltlek fndfylvmpf mgtdlskimk hekltedriq
       61 flvyqmlkgl kyihssgiih rdlkpgnlav nedcelkild fglarhtdse mtgyvvtrwy
      121 rapevilnwm hytqtvdiws vgcimaemit grplfkgndh ldqlteimki tgtptqdfvq
      181 klqsqdakny ikslpkvqkk dfacilkyan plavnllekm lvldaekrvt aaealmhpyf
      241 epihdpeeei eaekyddtfd nmdlpldewk ritykeilnf kppqtseske tav
//
LOCUS       XP_053912355             571 aa            linear   VRT 09-MAR-2023
DEFINITION  glypican-5 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912355
VERSION     XP_053912355.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056380.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..571
                     /product="glypican-5 isoform X1"
                     /calculated_mol_wt=63037
     Region          28..568
                     /region_name="Glypican"
                     /note="pfam01153"
                     /db_xref="CDD:460084"
     CDS             1..571
                     /gene="GPC5"
                     /coded_by="XM_054056380.1:113..1828"
                     /db_xref="GeneID:104067226"
ORIGIN      
        1 mggkslgvfg lgalllaaas gaaepppsce svrkvfqlrq lgslkgipes pragvdlqvc
       61 tsknptcctk kmeeryqtav kqdiqqvlqt ssatlkflis rnaaafqenf emlirlaeny
      121 tstlfcstyr nmaaeatthv qefftdvglf vfgadvstqe fvnrffdtlf pvvynyiinp
      181 gltdisleya eclrmarrdi rpfgsvpkka igqiersllp srtflqalnl gievinttdh
      241 lhfskdcsra llrmhycphc qgltlskpcm gyclnvirgc lanmaevdlh wrgyiqslee
      301 lsnamsgthd iehvllnfhs lvndalvqah ingpelseqv kkvcgspvrk pavspgcsfd
      361 qnierlkmfs rdgeetlanr rkefishlrl yrafygglad qlcgnelaaa dglpcwnged
      421 vvrsythrvv gsgikaqsan pevkvkgtdp vinqiidklk hiiqllqgks fpkyhkwdlq
      481 qigsgggvhe eisgdcdded gcegsgsgev krvlksidsg mpdktnlndv kelhqindds
      541 tldtkgtgyt tmadcmtfml iilvtlflsl w
//
LOCUS       XP_053912356             570 aa            linear   VRT 09-MAR-2023
DEFINITION  glypican-5 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912356
VERSION     XP_053912356.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056381.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..570
                     /product="glypican-5 isoform X2"
                     /calculated_mol_wt=63080
     Region          28..567
                     /region_name="Glypican"
                     /note="pfam01153"
                     /db_xref="CDD:460084"
     CDS             1..570
                     /gene="GPC5"
                     /coded_by="XM_054056381.1:113..1825"
                     /db_xref="GeneID:104067226"
ORIGIN      
        1 mggkslgvfg lgalllaaas gaaepppsce svrkvfqlrq lgslkgipes pragvdlqvc
       61 tsknptcctk kmeeryqtav kqdiqqvlqt ssatlkflis rnaaafqenf emlirlaeny
      121 tstlfcstyr nmaaeatthv qefftdvglf vfgadvstqe fvnrffdtlf pvvynyiinp
      181 gltdisleya eclrmarrdi rpfgsvpkka igqiersllp srtflqalnl gievinttdh
      241 lhfskdcsra llrmhycphc qgltlskpcm gyclnvirgc lanmaevdlh wrgyiqslee
      301 lsnamsgthd iehvllnfhs lvndalvqah ingpelseqv kkvcgspvrk pavspgcsfd
      361 qnierlkmfs rdgeetlanr rkefishlrl yrafygglad qlcgnelaaa dglpcwnged
      421 vvrsythrvv gsgikaqsan pevkvkgtdp vinqiidklk hiiqllqgks fpkyhkwdlq
      481 qigsgggvhe eisgdcdded gcegsgsgev krvlksidwm pdktnlndvk elhqinddst
      541 ldtkgtgytt madcmtfmli ilvtlflslw
//
LOCUS       XP_053912357             531 aa            linear   VRT 09-MAR-2023
DEFINITION  glypican-5 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912357
VERSION     XP_053912357.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056382.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..531
                     /product="glypican-5 isoform X3"
                     /calculated_mol_wt=58796
     Region          28..509
                     /region_name="Glypican"
                     /note="pfam01153"
                     /db_xref="CDD:460084"
     CDS             1..531
                     /gene="GPC5"
                     /coded_by="XM_054056382.1:113..1708"
                     /db_xref="GeneID:104067226"
ORIGIN      
        1 mggkslgvfg lgalllaaas gaaepppsce svrkvfqlrq lgslkgipes pragvdlqvc
       61 tsknptcctk kmeeryqtav kqdiqqvlqt ssatlkflis rnaaafqenf emlirlaeny
      121 tstlfcstyr nmaaeatthv qefftdvglf vfgadvstqe fvnrffdtlf pvvynyiinp
      181 gltdisleya eclrmarrdi rpfgsvpkka igqiersllp srtflqalnl gievinttdh
      241 lhfskdcsra llrmhycphc qgltlskpcm gyclnvirgc lanmaevdlh wrgyiqslee
      301 lsnamsgthd iehvllnfhs lvndalvqah ingpelseqv kkvcgspvrk pavspgcsfd
      361 qnierlkmfs rdgeetlanr rkefishlrl yrafygglad qlcgnelaaa dglpcwnged
      421 vvrsythrvv gsgikaqsan pevkvkgtdp vinqiidklk hiiqllqgks fpkyhkwdlq
      481 qigsgggvhe eisgdcdded gcegsgsgev krvlksidwf gylrtrlsrk e
//
LOCUS       XP_009558021             252 aa            linear   VRT 09-MAR-2023
DEFINITION  tetraspanin-19 [Cuculus canorus].
ACCESSION   XP_009558021
VERSION     XP_009558021.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009559726.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009558021.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..252
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..252
                     /product="tetraspanin-19"
                     /calculated_mol_wt=28853
     Region          11..240
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          <147..215
                     /region_name="tetraspanin_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL). Tetraspanins are trans-membrane
                     proteins with 4 trans-membrane segments. Both the N- and
                     C-termini lie on the intracellular side of the membrane.
                     This alignment model spans the...; cl02781"
                     /db_xref="CDD:351888"
     CDS             1..252
                     /gene="TSPAN19"
                     /coded_by="XM_009559726.2:148..906"
                     /db_xref="GeneID:104058245"
ORIGIN      
        1 mktgdktliq kyylsvfngi fltlglmllt fglwlsfdrn nlfsvlfssg enqlvsymcc
       61 mllgigsait ftsavgfigs vkeikyllvt yigfqilvfv aqmaisvlil mkkeevhnqw
      121 nnridevise ygneslteqe piwnildavq hdmeccgryn vtqwernknk enstqipcsc
      181 vksglkkwfc dvtrdsmhsr gceeylntwf ennililtai svstlitqmf litlttqllr
      241 nirknsiwpn el
//
LOCUS       XP_009554885             452 aa            linear   VRT 09-MAR-2023
DEFINITION  probable ATP-dependent RNA helicase DDX47 [Cuculus canorus].
ACCESSION   XP_009554885
VERSION     XP_009554885.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556590.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..452
                     /product="probable ATP-dependent RNA helicase DDX47"
                     /calculated_mol_wt=50281
     Region          25..431
                     /region_name="SrmB"
                     /note="Superfamily II DNA and RNA helicase [Replication,
                     recombination and repair]; COG0513"
                     /db_xref="CDD:440279"
     CDS             1..452
                     /gene="DDX47"
                     /coded_by="XM_009556590.2:72..1430"
                     /db_xref="GeneID:104055468"
ORIGIN      
        1 maageeegka vvepdpeaav eeprtfkdlg vtdvlceacd qlgwktptki qveaipvalq
       61 grdiiglaet gsgktgafal pilqalletp qrlfalvltp trelafqise qfealgssig
      121 vhttvivggi dtmsqslala kkphviiatp grlvdhlent kgfnlralkf lvmdeadril
      181 nmdfetevdk ilkviprdrk tflfsatmtk kvqklqraal knpvkcavss kyqtveklqq
      241 yyifipskfk dsylvyilne lagnsfmifc stcsntqrta lllrnlgfta iplhgqmsqn
      301 krlgslnkfk akarsillat dvasrgldip hvdvvinfdi pthskdyihr vgrtaragrs
      361 gksitfvtqy dvelfqrieh ligkklpafp mqeeevmmlt ervaeaqrfa rmemreqgek
      421 krsrnddddd teealgvrnk vaggkkkkrk af
//
LOCUS       XP_053912358             155 aa            linear   VRT 09-MAR-2023
DEFINITION  microsomal glutathione S-transferase 1 [Cuculus canorus].
ACCESSION   XP_053912358
VERSION     XP_053912358.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056383.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..155
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..155
                     /product="microsomal glutathione S-transferase 1"
                     /calculated_mol_wt=17245
     Region          16..149
                     /region_name="MAPEG"
                     /note="MAPEG family; pfam01124"
                     /db_xref="CDD:460074"
     CDS             1..155
                     /gene="MGST1"
                     /coded_by="XM_054056383.1:173..640"
                     /db_xref="GeneID:104067846"
ORIGIN      
        1 makltqlidn evfqayatya tivlvkmmlm spmtayfrvt rkafanpedt asfgkgesak
       61 kylrtdpdve rvrrghlndl enivpflgig llyalsgpdl ytallhfrif agarithsfa
      121 yliplpqpsr glswavgyav tmsmaykvlk talyl
//
LOCUS       XP_053912360             278 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat and SOCS box protein 13 [Cuculus canorus].
ACCESSION   XP_053912360
VERSION     XP_053912360.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056385.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..278
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..278
                     /product="ankyrin repeat and SOCS box protein 13"
                     /calculated_mol_wt=29843
     Region          18..221
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Site            order(20,24..25,28..30,32..33,37,40,49,51,53,57..58,
                     61..63,65..66,70,73,82,84,86,90..91,94..96,98..99,103,106)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          20..49
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          51..82
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          84..112
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          119..147
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(122..123,126..128,130..131,135,138,147,149,151,
                     155..156,159..161,163..164,168,171,181,183,187..188,
                     191..193,195..196,200,203,212)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          149..179
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          181..212
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          237..278
                     /region_name="SOCS_ASB13"
                     /note="SOCS (suppressors of cytokine signaling) box of
                     ASB13-like proteins. ASB family members have a C-terminal
                     SOCS box and an N-terminal ankyrin-related sequence. The
                     general function of the SOCS box is the recruitment of the
                     ubiquitin-transferase system; cd03729"
                     /db_xref="CDD:239699"
     Site            order(238..243,249,259,265,270)
                     /site_type="other"
                     /note="putative elongin B/C interaction [polypeptide
                     binding]"
                     /db_xref="CDD:239699"
     CDS             1..278
                     /gene="ASB13"
                     /coded_by="XM_054056385.1:73..909"
                     /db_xref="GeneID:104061455"
ORIGIN      
        1 mespvgsgsv rgeigfwadr tpvheaarrg eilqlqqlie sgacvnavty dsitplheas
       61 lrgqtqcvkl llaagaqvda rnidgstplc dacasgsiec vkvllshgak vnpplytasp
      121 lheacmngss ecvqllidvg anleahdchf gtplhvacar ehldcakvll kaganvnaak
      181 lhetalhhaa kvknvdlvem liefggniya rdnrgkkpsd ytwsssptak cfeyyektpl
      241 slsqlcrvtv rkaagqrale kiaklnipsr liqylsyn
//
LOCUS       XP_053912361             522 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: GDP-Man:Man(3)GlcNAc(2)-PP-Dol
            alpha-1,2-mannosyltransferase-like [Cuculus canorus].
ACCESSION   XP_053912361
VERSION     XP_053912361.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056386.1
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 33% of CDS bases
            frameshifts :: corrected 3 indels
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..522
                     /product="LOW QUALITY PROTEIN:
                     GDP-Man:Man(3)GlcNAc(2)-PP-Dol
                     alpha-1,2-mannosyltransferase-like"
                     /calculated_mol_wt=58717
     Region          164..497
                     /region_name="GT4_ALG11-like"
                     /note="alpha-1,2-mannosyltransferase ALG11 and similar
                     proteins; cd03806"
                     /db_xref="CDD:340835"
     CDS             1..522
                     /gene="LOC104056526"
                     /coded_by="XM_054056386.1:1..1569"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 3 bases in 3 codons"
                     /db_xref="GeneID:104056526"
ORIGIN      
        1 msvpqcrggc vvdttslckh tsvqlqpqkl qnlprtrsam lhccvpaalf skgasgkpsq
       61 agddpkeamp trtssssiyr tqlrwlplsg lsltlreaqn nsineddqit iaeellddqw
      121 negteyrywd amspdlegef etapcptspt reagrdgkrp lvsaffhpyc saggggervl
      181 wyairtlqkr yrngmcvvyt gdrdftgeei vegafrrfni klthpvkfvf lrylveafly
      241 phftllgqnl glvflgwegl lkfvpdiyid smgyaftlpx fkylggcrvg cyvryltist
      301 dilsxnrdtr fnnaafitnn slfskfklvh yyffaflyel vgscsdvvmv nsswmlnhil
      361 slwragacts ilyppcdlqt fldllleeek siieysivsi sqfrpekdhp lqirafaill
      421 kekrlgqqls lrliligdcr nxqdeeqvkn lkglceelgv snyvtfrini sfeelkrhla
      481 katiglhtmw nehfgigqyl fsvfnqlspl ggdsihdegs sv
//
LOCUS       XP_053912362             354 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Wnt-11 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912362
VERSION     XP_053912362.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056387.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..354
                     /product="protein Wnt-11 isoform X1"
                     /calculated_mol_wt=39292
     Region          51..354
                     /region_name="Wnt_Wnt11"
                     /note="Wnt domain found in protein Wnt-11 and similar
                     proteins; cd19343"
                     /db_xref="CDD:381717"
     Site            order(210..211,214..216,224,333,335,337,339)
                     /site_type="other"
                     /note="Frizzled receptor binding site [polypeptide
                     binding]"
                     /db_xref="CDD:381717"
     CDS             1..354
                     /gene="WNT11"
                     /coded_by="XM_054056387.1:501..1565"
                     /db_xref="GeneID:104064128"
ORIGIN      
        1 mkpspqffla gflslilqtg scygikwial sktpsalaln qtqhckqleg lvvsqvqlcr
       61 snlelmqtii qaareviktc rktfsdmrwn cssielapny lldlergtre safvyalsaa
      121 aishtiarac ttgdlpgcsc gpipgetpgp gyrwggcadn lnyglimgsk fsdapmkmkk
      181 sgsqanklmh lhnsevgrqv lkaslemkck chgvsgscsi ktcwkglqel qdialdlknk
      241 ylsatkvvhr pmgtrkylvp kdidirpvke teliylqssp dfcmknekvg shgtqdrqcn
      301 ktsngsdscd lmccgrgynp ymdkvverch ckyhwccyvt ckkcertver yvck
//
LOCUS       XP_053912363             326 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Wnt-11 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912363
VERSION     XP_053912363.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056388.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..326
                     /product="protein Wnt-11 isoform X2"
                     /calculated_mol_wt=36362
     Region          51..326
                     /region_name="Wnt_Wnt11"
                     /note="Wnt domain found in protein Wnt-11 and similar
                     proteins; cd19343"
                     /db_xref="CDD:381717"
     Site            order(182..183,186..188,196,305,307,309,311)
                     /site_type="other"
                     /note="Frizzled receptor binding site [polypeptide
                     binding]"
                     /db_xref="CDD:381717"
     CDS             1..326
                     /gene="WNT11"
                     /coded_by="XM_054056388.1:500..1480"
                     /db_xref="GeneID:104064128"
ORIGIN      
        1 mkpspqffla gflslilqtg scygikwial sktpsalaln qtqhckqleg lvvsqvqlcr
       61 snlelmqtii qaareviktc rktfsdmrwn cssielapny lldlergtre safvyalsaa
      121 aishtiarac ttgdlpgcsc gpipdapmkm kksgsqankl mhlhnsevgr qvlkaslemk
      181 ckchgvsgsc siktcwkglq elqdialdlk nkylsatkvv hrpmgtrkyl vpkdidirpv
      241 keteliylqs spdfcmknek vgshgtqdrq cnktsngsds cdlmccgrgy npymdkvver
      301 chckyhwccy vtckkcertv eryvck
//
LOCUS       XP_009554717             208 aa            linear   VRT 09-MAR-2023
DEFINITION  fibroblast growth factor 9 [Cuculus canorus].
ACCESSION   XP_009554717
VERSION     XP_009554717.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556422.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..208
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..208
                     /product="fibroblast growth factor 9"
                     /calculated_mol_wt=23323
     Region          49..208
                     /region_name="beta-trefoil_FGF9"
                     /note="FGF domain, beta-trefoil fold, found in fibroblast
                     growth factor 9 (FGF9) and similar proteins; cd23325"
                     /db_xref="CDD:467011"
     Site            order(60..62,64,67,69,73,88,143..144,188..195,200..201,
                     204..205)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467011"
     Site            order(137,154,161,163,173,177,180)
                     /site_type="other"
                     /note="putative heparin binding site [chemical binding]"
                     /db_xref="CDD:467011"
     CDS             1..208
                     /gene="FGF9"
                     /coded_by="XM_009556422.2:896..1522"
                     /db_xref="GeneID:104055313"
ORIGIN      
        1 maplgevgny fgvqdavpfg nvpvlpvdsp vllsdhlgqs eagglprgpa vtdldhlkgi
       61 lrrrqlycrt gfhleifpng tiqgtrqdhs rfgilefisi avglvsirgv dsglylgmne
      121 kgelygsekl tqecvfreqf eenwyntyss nlykhvdtgr ryyvalnkdg tpregtrtkr
      181 hqkfthflpr pvdpekvpel ykdilsqs
//
LOCUS       XP_009555302             559 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA N6-adenosine-methyltransferase METTL16 [Cuculus canorus].
ACCESSION   XP_009555302
VERSION     XP_009555302.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557007.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555302.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..559
                     /product="RNA N6-adenosine-methyltransferase METTL16"
                     /calculated_mol_wt=63207
     Region          1..291
                     /region_name="AdoMet_MTases"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); cl17173"
                     /db_xref="CDD:473071"
     Site            order(109..115,133..134,160..162,184)
                     /site_type="other"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]"
                     /db_xref="CDD:100107"
     CDS             1..559
                     /gene="METTL16"
                     /coded_by="XM_009557007.2:39..1718"
                     /db_xref="GeneID:104055822"
ORIGIN      
        1 malskcmhar nryrdkppdf aylagkypaf rqhvrcslag rvslnfkdpe avraltctll
       61 kedfgltidi pverliptvp lrlnyihwve dlighqdadk qvlrrgidig tgasciypll
      121 gatlngwyfl atevddmcfn yakknveqnn lsdlikvvkv pqktllmdal keeseiiydf
      181 cmcnppffan qleakgvnsr nprrpppssv ntggiteima eggelefvkr iihdslqlkk
      241 rlrwyscmlg kkcslaplke elriqgvpkv thtefcqgrt mrwalawsfy ddvqvpspps
      301 krrklekprk pitfmvlast vkelsikaat lgwdaveala vvrawiekil idlkvqhkrv
      361 pcgkdevslf vtaienswih lrrkkrerir qlrelprase dvlqamegik tsqksssnns
      421 nyenpkteds etgfvapded vsltagdelt eesaakeehs ehvkeektev kpgetslgkg
      481 ssnakeepcp seeasnltae keqspketss cflfkclinv kkegddvvve mhwvegqnrd
      541 lmnqlctylr nqilrlvas
//
LOCUS       XP_053912365            1854 aa            linear   VRT 09-MAR-2023
DEFINITION  inactive histone-lysine N-methyltransferase 2E isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912365
VERSION     XP_053912365.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056390.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1854
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1854
                     /product="inactive histone-lysine N-methyltransferase 2E
                     isoform X1"
                     /calculated_mol_wt=203553
     Region          119..162
                     /region_name="PHD_MLL5"
                     /note="PHD finger found in mixed lineage leukemia 5
                     (MLL5); cd15550"
                     /db_xref="CDD:277025"
     Site            order(127,129..133,135,140,153..157)
                     /site_type="other"
                     /note="histone H3 binding site [polypeptide binding]"
                     /db_xref="CDD:277025"
     Region          316..444
                     /region_name="SET_KMT2E"
                     /note="SET domain found in inactive histone-lysine
                     N-methyltransferase 2E (KMT2E) and similar proteins;
                     cd19182"
                     /db_xref="CDD:380959"
     Site            order(333..334,351,361,371..378,398..402,410,426,437..443)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:380959"
     Site            order(333..334,371..374,398..402,439)
                     /site_type="other"
                     /note="putative SAM binding site"
                     /db_xref="CDD:380959"
     Region          <478..>661
                     /region_name="TPH"
                     /note="Trichohyalin-plectin-homology domain; pfam13868"
                     /db_xref="CDD:464007"
     Region          1322..>1668
                     /region_name="Atrophin-1"
                     /note="Atrophin-1 family; pfam03154"
                     /db_xref="CDD:460830"
     Region          <1730..>1854
                     /region_name="PAT1"
                     /note="Topoisomerase II-associated protein PAT1;
                     pfam09770"
                     /db_xref="CDD:401645"
     CDS             1..1854
                     /gene="KMT2E"
                     /coded_by="XM_054056390.1:410..5974"
                     /db_xref="GeneID:104056073"
ORIGIN      
        1 msiviplgvd tadtsylema agsepesvea spvvveksns yphqlytsss hshsyiglpy
       61 adhnygarpp ptppasppps vlisknevgi fttpnfdets sattistsed gsygtditrc
      121 icgfthddgy miccdkcsvw qhidcmgidr qhipdiylce rcqprsldke ravllqrrkr
      181 enmsdgdtsa tesgdevpve lytafqhtpt titltatrvt kvndkkrkks gekeqniakc
      241 kkafregsrk ssrvkgsape idptdstnfg wetkikawmd ryeeannnqy segvqreaqk
      301 ialrlgngnd kkevntsnli fkppvesyvq knkkilkaak dlppdaliie yrgkfmlrdq
      361 feangyffkr pypfvlfysk fhglemcvda rtfgnearfi rrsctpnaev rhviedgtih
      421 lyiysihnip kgteitiafd fdygnckykv dcaclkenpe cpvlrrsept enintgyetr
      481 rkkgkkekdv sreketqnqn itldcegaaa kmkiadnkqr klsplrlsis nnqepdfidd
      541 ieektpisne vemeseeqia erkrkmtree rkmeailqaf arlekrekrr eqalerista
      601 ktevksecke ahilndaefi qepvkeetat kptpakvnra kqrksfsrsr thigqqrrrh
      661 rtvsmcsdiq psspdvevts qhneaenaal vaepetetvv temvteteap alnkcptkyp
      721 ktkkhlvsew lseksdktgk stdslserpl rittdpevla tqlnslpglt ysphvystpk
      781 hyirftspfl sekrrkkepl enitgsckkr wlkqaleeen stmidrfnsp sqersrspai
      841 ngenksplll ndscsltdlt tplkkrrlyq llesafsets tptpspyatp thaditaset
      901 slfatpprvk tedeacrngy kpiyspvtpv tpcihgntmh fenisspdss peikrraysq
      961 egydrasila lnsfrnsnlt emglqeikti gyssprnrtd vtrqctgeme svsdlqlgle
     1021 vieqsalhkn aeapthdrtd snsqletahc grgtiysswv kspdrtgvnf smnsnlrdlt
     1081 pshqlevggg friseskcli qddargmfme asvfctsedg iasgfgrtvn ndnlmdgnct
     1141 pqnppqkkkv slleyrkrqr earksgskte nfplvaesph aagggntsgn ngandgynns
     1201 sengeqtdna tslplplptt vynaapedsg nncavkesss seknepevqw tastsveqvr
     1261 ersyqralll sdhrkdkdsg gesrcsscsp shvqsppsph snlisqlqlk apsftefmee
     1321 pdtenpepts ecpspdtsqk tckspskask psspspvvst qslgktptkp dshwetaaia
     1381 peaesvnhpk pelqqkqltn svqalskphp sqshlrssae qlthpqklps aplklhcpps
     1441 phvenppkps tphapvqhgy lspkphsqpl gspyrphhpq spqvgtpqre thrnfypaap
     1501 tltpsnqqqa sgplftqtts gqssvsysqf nqqslnssap ppppppppss tyyqsqqpsg
     1561 nfqsysqlkg sipqqtvfss gpnqplpgta gqqtvpghhv taghflpsqn psihhqasas
     1621 aapppppppp apgphlvqqq sthpqhsvah vvgpvhavav apgshihsqa aghhlppppp
     1681 ppgplphhqp phpstghqgl qaqhqhvvns apppppppps gvigsghhpa saqglhhpsh
     1741 qgpphfpsna htsvssyssq aphhttlgpg pqhqpagtgp hcplpgqgph iqpqgpnsia
     1801 tpaasgfcph pgsvalphgv qgpqqaspvp gqipihraqv pptfqnnyhg sgwh
//
LOCUS       XP_053912366            1854 aa            linear   VRT 09-MAR-2023
DEFINITION  inactive histone-lysine N-methyltransferase 2E isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912366
VERSION     XP_053912366.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056391.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1854
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1854
                     /product="inactive histone-lysine N-methyltransferase 2E
                     isoform X1"
                     /calculated_mol_wt=203553
     Region          119..162
                     /region_name="PHD_MLL5"
                     /note="PHD finger found in mixed lineage leukemia 5
                     (MLL5); cd15550"
                     /db_xref="CDD:277025"
     Site            order(127,129..133,135,140,153..157)
                     /site_type="other"
                     /note="histone H3 binding site [polypeptide binding]"
                     /db_xref="CDD:277025"
     Region          316..444
                     /region_name="SET_KMT2E"
                     /note="SET domain found in inactive histone-lysine
                     N-methyltransferase 2E (KMT2E) and similar proteins;
                     cd19182"
                     /db_xref="CDD:380959"
     Site            order(333..334,351,361,371..378,398..402,410,426,437..443)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:380959"
     Site            order(333..334,371..374,398..402,439)
                     /site_type="other"
                     /note="putative SAM binding site"
                     /db_xref="CDD:380959"
     Region          <478..>661
                     /region_name="TPH"
                     /note="Trichohyalin-plectin-homology domain; pfam13868"
                     /db_xref="CDD:464007"
     Region          1322..>1668
                     /region_name="Atrophin-1"
                     /note="Atrophin-1 family; pfam03154"
                     /db_xref="CDD:460830"
     Region          <1730..>1854
                     /region_name="PAT1"
                     /note="Topoisomerase II-associated protein PAT1;
                     pfam09770"
                     /db_xref="CDD:401645"
     CDS             1..1854
                     /gene="KMT2E"
                     /coded_by="XM_054056391.1:470..6034"
                     /db_xref="GeneID:104056073"
ORIGIN      
        1 msiviplgvd tadtsylema agsepesvea spvvveksns yphqlytsss hshsyiglpy
       61 adhnygarpp ptppasppps vlisknevgi fttpnfdets sattistsed gsygtditrc
      121 icgfthddgy miccdkcsvw qhidcmgidr qhipdiylce rcqprsldke ravllqrrkr
      181 enmsdgdtsa tesgdevpve lytafqhtpt titltatrvt kvndkkrkks gekeqniakc
      241 kkafregsrk ssrvkgsape idptdstnfg wetkikawmd ryeeannnqy segvqreaqk
      301 ialrlgngnd kkevntsnli fkppvesyvq knkkilkaak dlppdaliie yrgkfmlrdq
      361 feangyffkr pypfvlfysk fhglemcvda rtfgnearfi rrsctpnaev rhviedgtih
      421 lyiysihnip kgteitiafd fdygnckykv dcaclkenpe cpvlrrsept enintgyetr
      481 rkkgkkekdv sreketqnqn itldcegaaa kmkiadnkqr klsplrlsis nnqepdfidd
      541 ieektpisne vemeseeqia erkrkmtree rkmeailqaf arlekrekrr eqalerista
      601 ktevksecke ahilndaefi qepvkeetat kptpakvnra kqrksfsrsr thigqqrrrh
      661 rtvsmcsdiq psspdvevts qhneaenaal vaepetetvv temvteteap alnkcptkyp
      721 ktkkhlvsew lseksdktgk stdslserpl rittdpevla tqlnslpglt ysphvystpk
      781 hyirftspfl sekrrkkepl enitgsckkr wlkqaleeen stmidrfnsp sqersrspai
      841 ngenksplll ndscsltdlt tplkkrrlyq llesafsets tptpspyatp thaditaset
      901 slfatpprvk tedeacrngy kpiyspvtpv tpcihgntmh fenisspdss peikrraysq
      961 egydrasila lnsfrnsnlt emglqeikti gyssprnrtd vtrqctgeme svsdlqlgle
     1021 vieqsalhkn aeapthdrtd snsqletahc grgtiysswv kspdrtgvnf smnsnlrdlt
     1081 pshqlevggg friseskcli qddargmfme asvfctsedg iasgfgrtvn ndnlmdgnct
     1141 pqnppqkkkv slleyrkrqr earksgskte nfplvaesph aagggntsgn ngandgynns
     1201 sengeqtdna tslplplptt vynaapedsg nncavkesss seknepevqw tastsveqvr
     1261 ersyqralll sdhrkdkdsg gesrcsscsp shvqsppsph snlisqlqlk apsftefmee
     1321 pdtenpepts ecpspdtsqk tckspskask psspspvvst qslgktptkp dshwetaaia
     1381 peaesvnhpk pelqqkqltn svqalskphp sqshlrssae qlthpqklps aplklhcpps
     1441 phvenppkps tphapvqhgy lspkphsqpl gspyrphhpq spqvgtpqre thrnfypaap
     1501 tltpsnqqqa sgplftqtts gqssvsysqf nqqslnssap ppppppppss tyyqsqqpsg
     1561 nfqsysqlkg sipqqtvfss gpnqplpgta gqqtvpghhv taghflpsqn psihhqasas
     1621 aapppppppp apgphlvqqq sthpqhsvah vvgpvhavav apgshihsqa aghhlppppp
     1681 ppgplphhqp phpstghqgl qaqhqhvvns apppppppps gvigsghhpa saqglhhpsh
     1741 qgpphfpsna htsvssyssq aphhttlgpg pqhqpagtgp hcplpgqgph iqpqgpnsia
     1801 tpaasgfcph pgsvalphgv qgpqqaspvp gqipihraqv pptfqnnyhg sgwh
//
LOCUS       XP_053912367            1853 aa            linear   VRT 09-MAR-2023
DEFINITION  inactive histone-lysine N-methyltransferase 2E isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912367
VERSION     XP_053912367.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056392.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1853
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1853
                     /product="inactive histone-lysine N-methyltransferase 2E
                     isoform X2"
                     /calculated_mol_wt=203424
     Region          119..162
                     /region_name="PHD_MLL5"
                     /note="PHD finger found in mixed lineage leukemia 5
                     (MLL5); cd15550"
                     /db_xref="CDD:277025"
     Site            order(127,129..133,135,140,153..157)
                     /site_type="other"
                     /note="histone H3 binding site [polypeptide binding]"
                     /db_xref="CDD:277025"
     Region          316..444
                     /region_name="SET_KMT2E"
                     /note="SET domain found in inactive histone-lysine
                     N-methyltransferase 2E (KMT2E) and similar proteins;
                     cd19182"
                     /db_xref="CDD:380959"
     Site            order(333..334,351,361,371..378,398..402,410,426,437..443)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:380959"
     Site            order(333..334,371..374,398..402,439)
                     /site_type="other"
                     /note="putative SAM binding site"
                     /db_xref="CDD:380959"
     Region          <478..>607
                     /region_name="TPH"
                     /note="Trichohyalin-plectin-homology domain; pfam13868"
                     /db_xref="CDD:464007"
     Region          1321..>1667
                     /region_name="Atrophin-1"
                     /note="Atrophin-1 family; pfam03154"
                     /db_xref="CDD:460830"
     Region          <1729..>1853
                     /region_name="PAT1"
                     /note="Topoisomerase II-associated protein PAT1;
                     pfam09770"
                     /db_xref="CDD:401645"
     CDS             1..1853
                     /gene="KMT2E"
                     /coded_by="XM_054056392.1:411..5972"
                     /db_xref="GeneID:104056073"
ORIGIN      
        1 msiviplgvd tadtsylema agsepesvea spvvveksns yphqlytsss hshsyiglpy
       61 adhnygarpp ptppasppps vlisknevgi fttpnfdets sattistsed gsygtditrc
      121 icgfthddgy miccdkcsvw qhidcmgidr qhipdiylce rcqprsldke ravllqrrkr
      181 enmsdgdtsa tesgdevpve lytafqhtpt titltatrvt kvndkkrkks gekeqniakc
      241 kkafregsrk ssrvkgsape idptdstnfg wetkikawmd ryeeannnqy segvqreaqk
      301 ialrlgngnd kkevntsnli fkppvesyvq knkkilkaak dlppdaliie yrgkfmlrdq
      361 feangyffkr pypfvlfysk fhglemcvda rtfgnearfi rrsctpnaev rhviedgtih
      421 lyiysihnip kgteitiafd fdygnckykv dcaclkenpe cpvlrrsept enintgyetr
      481 rkkgkkekdv sreketqnqn itldcegaaa kmkiadnkqr klsplrlsis nnqepdfidd
      541 ieektpisne vemeseeqia erkrkmtree rkmeailqaf arlekrekrr eqalerista
      601 ktevksecke ahilndaefi qpvkeetatk ptpakvnrak qrksfsrsrt higqqrrrhr
      661 tvsmcsdiqp sspdvevtsq hneaenaalv aepetetvvt emvteteapa lnkcptkypk
      721 tkkhlvsewl seksdktgks tdslserplr ittdpevlat qlnslpglty sphvystpkh
      781 yirftspfls ekrrkkeple nitgsckkrw lkqaleeens tmidrfnsps qersrspain
      841 genkspllln dscsltdltt plkkrrlyql lesafsetst ptpspyatpt haditasets
      901 lfatpprvkt edeacrngyk piyspvtpvt pcihgntmhf enisspdssp eikrraysqe
      961 gydrasilal nsfrnsnlte mglqeiktig yssprnrtdv trqctgemes vsdlqlglev
     1021 ieqsalhkna eapthdrtds nsqletahcg rgtiysswvk spdrtgvnfs mnsnlrdltp
     1081 shqlevgggf riseskcliq ddargmfmea svfctsedgi asgfgrtvnn dnlmdgnctp
     1141 qnppqkkkvs lleyrkrqre arksgskten fplvaespha agggntsgnn gandgynnss
     1201 engeqtdnat slplplpttv ynaapedsgn ncavkessss eknepevqwt astsveqvre
     1261 rsyqrallls dhrkdkdsgg esrcsscsps hvqsppsphs nlisqlqlka psftefmeep
     1321 dtenpeptse cpspdtsqkt ckspskaskp sspspvvstq slgktptkpd shwetaaiap
     1381 eaesvnhpkp elqqkqltns vqalskphps qshlrssaeq lthpqklpsa plklhcppsp
     1441 hvenppkpst phapvqhgyl spkphsqplg spyrphhpqs pqvgtpqret hrnfypaapt
     1501 ltpsnqqqas gplftqttsg qssvsysqfn qqslnssapp pppppppsst yyqsqqpsgn
     1561 fqsysqlkgs ipqqtvfssg pnqplpgtag qqtvpghhvt aghflpsqnp sihhqasasa
     1621 appppppppa pgphlvqqqs thpqhsvahv vgpvhavava pgshihsqaa ghhlpppppp
     1681 pgplphhqpp hpstghqglq aqhqhvvnsa ppppppppsg vigsghhpas aqglhhpshq
     1741 gpphfpsnah tsvssyssqa phhttlgpgp qhqpagtgph cplpgqgphi qpqgpnsiat
     1801 paasgfcphp gsvalphgvq gpqqaspvpg qipihraqvp ptfqnnyhgs gwh
//
LOCUS       XP_053912368            1835 aa            linear   VRT 09-MAR-2023
DEFINITION  inactive histone-lysine N-methyltransferase 2E isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053912368
VERSION     XP_053912368.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056393.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1835
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1835
                     /product="inactive histone-lysine N-methyltransferase 2E
                     isoform X3"
                     /calculated_mol_wt=201407
     Region          119..162
                     /region_name="PHD_MLL5"
                     /note="PHD finger found in mixed lineage leukemia 5
                     (MLL5); cd15550"
                     /db_xref="CDD:277025"
     Site            order(127,129..133,135,140,153..157)
                     /site_type="other"
                     /note="histone H3 binding site [polypeptide binding]"
                     /db_xref="CDD:277025"
     Region          316..444
                     /region_name="SET_KMT2E"
                     /note="SET domain found in inactive histone-lysine
                     N-methyltransferase 2E (KMT2E) and similar proteins;
                     cd19182"
                     /db_xref="CDD:380959"
     Site            order(333..334,351,361,371..378,398..402,410,426,437..443)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:380959"
     Site            order(333..334,371..374,398..402,439)
                     /site_type="other"
                     /note="putative SAM binding site"
                     /db_xref="CDD:380959"
     Region          <478..>661
                     /region_name="TPH"
                     /note="Trichohyalin-plectin-homology domain; pfam13868"
                     /db_xref="CDD:464007"
     Region          1303..>1649
                     /region_name="Atrophin-1"
                     /note="Atrophin-1 family; pfam03154"
                     /db_xref="CDD:460830"
     Region          <1711..>1835
                     /region_name="PAT1"
                     /note="Topoisomerase II-associated protein PAT1;
                     pfam09770"
                     /db_xref="CDD:401645"
     CDS             1..1835
                     /gene="KMT2E"
                     /coded_by="XM_054056393.1:411..5918"
                     /db_xref="GeneID:104056073"
ORIGIN      
        1 msiviplgvd tadtsylema agsepesvea spvvveksns yphqlytsss hshsyiglpy
       61 adhnygarpp ptppasppps vlisknevgi fttpnfdets sattistsed gsygtditrc
      121 icgfthddgy miccdkcsvw qhidcmgidr qhipdiylce rcqprsldke ravllqrrkr
      181 enmsdgdtsa tesgdevpve lytafqhtpt titltatrvt kvndkkrkks gekeqniakc
      241 kkafregsrk ssrvkgsape idptdstnfg wetkikawmd ryeeannnqy segvqreaqk
      301 ialrlgngnd kkevntsnli fkppvesyvq knkkilkaak dlppdaliie yrgkfmlrdq
      361 feangyffkr pypfvlfysk fhglemcvda rtfgnearfi rrsctpnaev rhviedgtih
      421 lyiysihnip kgteitiafd fdygnckykv dcaclkenpe cpvlrrsept enintgyetr
      481 rkkgkkekdv sreketqnqn itldcegaaa kmkiadnkqr klsplrlsis nnqepdfidd
      541 ieektpisne vemeseeqia erkrkmtree rkmeailqaf arlekrekrr eqalerista
      601 ktevksecke ahilndaefi qepvkeetat kptpakvnra kqrksfsrsr thigqqrrrh
      661 rtvsmcsdiq psspdvevts qhneaenaal vaepetetvv temvteteap alnkcptkyp
      721 ktkkhlvsew lseksdktgk stdslserpl rittdpevla tqlnslpglt ysphvystpk
      781 hyirftspfl sekrrkkepl enitgsckkr wlkqaleeen stmidrfnsp sqersrspai
      841 ngenksplll ndscsltdlt tplkkrrlyq llesafsets tptpspyatp thaditaset
      901 slfatpprvk tedeacrngy kpiyspvtpv tpcihgntmh fegydrasil alnsfrnsnl
      961 temglqeikt igyssprnrt dvtrqctgem esvsdlqlgl evieqsalhk naeapthdrt
     1021 dsnsqletah cgrgtiyssw vkspdrtgvn fsmnsnlrdl tpshqlevgg gfriseskcl
     1081 iqddargmfm easvfctsed giasgfgrtv nndnlmdgnc tpqnppqkkk vslleyrkrq
     1141 rearksgskt enfplvaesp haagggntsg nngandgynn ssengeqtdn atslplplpt
     1201 tvynaapeds gnncavkess sseknepevq wtastsveqv rersyqrall lsdhrkdkds
     1261 ggesrcsscs pshvqsppsp hsnlisqlql kapsftefme epdtenpept secpspdtsq
     1321 ktckspskas kpsspspvvs tqslgktptk pdshwetaai apeaesvnhp kpelqqkqlt
     1381 nsvqalskph psqshlrssa eqlthpqklp saplklhcpp sphvenppkp stphapvqhg
     1441 ylspkphsqp lgspyrphhp qspqvgtpqr ethrnfypaa ptltpsnqqq asgplftqtt
     1501 sgqssvsysq fnqqslnssa ppppppppps styyqsqqps gnfqsysqlk gsipqqtvfs
     1561 sgpnqplpgt agqqtvpghh vtaghflpsq npsihhqasa saappppppp papgphlvqq
     1621 qsthpqhsva hvvgpvhava vapgshihsq aaghhlpppp pppgplphhq pphpstghqg
     1681 lqaqhqhvvn sapppppppp sgvigsghhp asaqglhhps hqgpphfpsn ahtsvssyss
     1741 qaphhttlgp gpqhqpagtg phcplpgqgp hiqpqgpnsi atpaasgfcp hpgsvalphg
     1801 vqgpqqaspv pgqipihraq vpptfqnnyh gsgwh
//
LOCUS       XP_053912369            1821 aa            linear   VRT 09-MAR-2023
DEFINITION  inactive histone-lysine N-methyltransferase 2E isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053912369
VERSION     XP_053912369.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056394.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1821
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1821
                     /product="inactive histone-lysine N-methyltransferase 2E
                     isoform X4"
                     /calculated_mol_wt=199605
     Region          119..162
                     /region_name="PHD_MLL5"
                     /note="PHD finger found in mixed lineage leukemia 5
                     (MLL5); cd15550"
                     /db_xref="CDD:277025"
     Site            order(127,129..133,135,140,153..157)
                     /site_type="other"
                     /note="histone H3 binding site [polypeptide binding]"
                     /db_xref="CDD:277025"
     Region          316..444
                     /region_name="SET_KMT2E"
                     /note="SET domain found in inactive histone-lysine
                     N-methyltransferase 2E (KMT2E) and similar proteins;
                     cd19182"
                     /db_xref="CDD:380959"
     Site            order(333..334,351,361,371..378,398..402,410,426,437..443)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:380959"
     Site            order(333..334,371..374,398..402,439)
                     /site_type="other"
                     /note="putative SAM binding site"
                     /db_xref="CDD:380959"
     Region          508..568
                     /region_name="SWIRM-assoc_1"
                     /note="SWIRM-associated region 1; pfam16495"
                     /db_xref="CDD:465142"
     Region          1289..>1635
                     /region_name="Atrophin-1"
                     /note="Atrophin-1 family; pfam03154"
                     /db_xref="CDD:460830"
     Region          <1697..>1821
                     /region_name="PAT1"
                     /note="Topoisomerase II-associated protein PAT1;
                     pfam09770"
                     /db_xref="CDD:401645"
     CDS             1..1821
                     /gene="KMT2E"
                     /coded_by="XM_054056394.1:410..5875"
                     /db_xref="GeneID:104056073"
ORIGIN      
        1 msiviplgvd tadtsylema agsepesvea spvvveksns yphqlytsss hshsyiglpy
       61 adhnygarpp ptppasppps vlisknevgi fttpnfdets sattistsed gsygtditrc
      121 icgfthddgy miccdkcsvw qhidcmgidr qhipdiylce rcqprsldke ravllqrrkr
      181 enmsdgdtsa tesgdevpve lytafqhtpt titltatrvt kvndkkrkks gekeqniakc
      241 kkafregsrk ssrvkgsape idptdstnfg wetkikawmd ryeeannnqy segvqreaqk
      301 ialrlgngnd kkevntsnli fkppvesyvq knkkilkaak dlppdaliie yrgkfmlrdq
      361 feangyffkr pypfvlfysk fhglemcvda rtfgnearfi rrsctpnaev rhviedgtih
      421 lyiysihnip kgteitiafd fdygnckykv dcaclkenpe cpvlrrsept enintgyetr
      481 rkkgkkekdv sreketqnqn itldcegaaa kmkiadnkqr klsplrlsis nnqtreerkm
      541 eailqafarl ekrekrreqa leristakte vkseckeahi lndaefiqep vkeetatkpt
      601 pakvnrakqr ksfsrsrthi gqqrrrhrtv smcsdiqpss pdvevtsqhn eaenaalvae
      661 petetvvtem vteteapaln kcptkypktk khlvsewlse ksdktgkstd slserplrit
      721 tdpevlatql nslpgltysp hvystpkhyi rftspflsek rrkkepleni tgsckkrwlk
      781 qaleeenstm idrfnspsqe rsrspainge nksplllnds csltdlttpl kkrrlyqlle
      841 safsetstpt pspyatptha ditasetslf atpprvkted eacrngykpi yspvtpvtpc
      901 ihgntmhfen isspdsspei krraysqegy drasilalns frnsnltemg lqeiktigys
      961 sprnrtdvtr qctgemesvs dlqlglevie qsalhknaea pthdrtdsns qletahcgrg
     1021 tiysswvksp drtgvnfsmn snlrdltpsh qlevgggfri seskcliqdd argmfmeasv
     1081 fctsedgias gfgrtvnndn lmdgnctpqn ppqkkkvsll eyrkrqrear ksgsktenfp
     1141 lvaesphaag ggntsgnnga ndgynnssen geqtdnatsl plplpttvyn aapedsgnnc
     1201 avkessssek nepevqwtas tsveqvrers yqralllsdh rkdkdsgges rcsscspshv
     1261 qsppsphsnl isqlqlkaps ftefmeepdt enpeptsecp spdtsqktck spskaskpss
     1321 pspvvstqsl gktptkpdsh wetaaiapea esvnhpkpel qqkqltnsvq alskphpsqs
     1381 hlrssaeqlt hpqklpsapl klhcppsphv enppkpstph apvqhgylsp kphsqplgsp
     1441 yrphhpqspq vgtpqrethr nfypaaptlt psnqqqasgp lftqttsgqs svsysqfnqq
     1501 slnssapppp pppppsstyy qsqqpsgnfq sysqlkgsip qqtvfssgpn qplpgtagqq
     1561 tvpghhvtag hflpsqnpsi hhqasasaap pppppppapg phlvqqqsth pqhsvahvvg
     1621 pvhavavapg shihsqaagh hlpppppppg plphhqpphp stghqglqaq hqhvvnsapp
     1681 ppppppsgvi gsghhpasaq glhhpshqgp phfpsnahts vssyssqaph httlgpgpqh
     1741 qpagtgphcp lpgqgphiqp qgpnsiatpa asgfcphpgs valphgvqgp qqaspvpgqi
     1801 pihraqvppt fqnnyhgsgw h
//
LOCUS       XP_053912370            1814 aa            linear   VRT 09-MAR-2023
DEFINITION  inactive histone-lysine N-methyltransferase 2E isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053912370
VERSION     XP_053912370.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056395.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1814
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1814
                     /product="inactive histone-lysine N-methyltransferase 2E
                     isoform X5"
                     /calculated_mol_wt=199283
     Region          119..162
                     /region_name="PHD_MLL5"
                     /note="PHD finger found in mixed lineage leukemia 5
                     (MLL5); cd15550"
                     /db_xref="CDD:277025"
     Site            order(127,129..133,135,140,153..157)
                     /site_type="other"
                     /note="histone H3 binding site [polypeptide binding]"
                     /db_xref="CDD:277025"
     Region          316..444
                     /region_name="SET_KMT2E"
                     /note="SET domain found in inactive histone-lysine
                     N-methyltransferase 2E (KMT2E) and similar proteins;
                     cd19182"
                     /db_xref="CDD:380959"
     Site            order(333..334,351,361,371..378,398..402,410,426,437..443)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:380959"
     Site            order(333..334,371..374,398..402,439)
                     /site_type="other"
                     /note="putative SAM binding site"
                     /db_xref="CDD:380959"
     Region          <478..>661
                     /region_name="TPH"
                     /note="Trichohyalin-plectin-homology domain; pfam13868"
                     /db_xref="CDD:464007"
     Region          1271..>1628
                     /region_name="Atrophin-1"
                     /note="Atrophin-1 family; pfam03154"
                     /db_xref="CDD:460830"
     Region          <1690..>1814
                     /region_name="PAT1"
                     /note="Topoisomerase II-associated protein PAT1;
                     pfam09770"
                     /db_xref="CDD:401645"
     CDS             1..1814
                     /gene="KMT2E"
                     /coded_by="XM_054056395.1:410..5854"
                     /db_xref="GeneID:104056073"
ORIGIN      
        1 msiviplgvd tadtsylema agsepesvea spvvveksns yphqlytsss hshsyiglpy
       61 adhnygarpp ptppasppps vlisknevgi fttpnfdets sattistsed gsygtditrc
      121 icgfthddgy miccdkcsvw qhidcmgidr qhipdiylce rcqprsldke ravllqrrkr
      181 enmsdgdtsa tesgdevpve lytafqhtpt titltatrvt kvndkkrkks gekeqniakc
      241 kkafregsrk ssrvkgsape idptdstnfg wetkikawmd ryeeannnqy segvqreaqk
      301 ialrlgngnd kkevntsnli fkppvesyvq knkkilkaak dlppdaliie yrgkfmlrdq
      361 feangyffkr pypfvlfysk fhglemcvda rtfgnearfi rrsctpnaev rhviedgtih
      421 lyiysihnip kgteitiafd fdygnckykv dcaclkenpe cpvlrrsept enintgyetr
      481 rkkgkkekdv sreketqnqn itldcegaaa kmkiadnkqr klsplrlsis nnqepdfidd
      541 ieektpisne vemeseeqia erkrkmtree rkmeailqaf arlekrekrr eqalerista
      601 ktevksecke ahilndaefi qepvkeetat kptpakvnra kqrksfsrsr thigqqrrrh
      661 rtvsmcsdiq psspdvevts qhneaenaal vaepetetvv temvteteap alnkcptkyp
      721 ktkkhlvsew lseksdktgk stdslserpl rittdpevla tqlnslpglt ysphvystpk
      781 hyirftspfl sekrrkkepl enitgsckkr wlkqaleeen stmidrfnsp sqersrspai
      841 ngenksplll ndscsltdlt tplkkrrlyq llesafsets tptpspyatp thaditaset
      901 slfatpprvk tedeacrngy kpiyspvtpv tpcihgntmh fenisspdss peikrraysq
      961 egydrasila lnsfrnsnlt emglqeikti gyssprnrtd vtrqctgeme svsdlqlgle
     1021 vieqsalhkn aeapthdrtd snsqletahc grgtiysswv kspdrtgvnf smnsnlrdlt
     1081 pshqlevggg friseskcli qddargmfme asvfctsedg iasgfgrtvn ndnlmdgnct
     1141 pqnppqkkkv slleyrkrqr earksgskte nfplvaesph aagggntsgn ngandgynns
     1201 sengeqtdna tslplplptt vynaapedsg nncavkesss seknepevqw tastsveqvr
     1261 ersyqralll sdhrkdkdse pdtenpepts ecpspdtsqk tckspskask psspspvvst
     1321 qslgktptkp dshwetaaia peaesvnhpk pelqqkqltn svqalskphp sqshlrssae
     1381 qlthpqklps aplklhcpps phvenppkps tphapvqhgy lspkphsqpl gspyrphhpq
     1441 spqvgtpqre thrnfypaap tltpsnqqqa sgplftqtts gqssvsysqf nqqslnssap
     1501 ppppppppss tyyqsqqpsg nfqsysqlkg sipqqtvfss gpnqplpgta gqqtvpghhv
     1561 taghflpsqn psihhqasas aapppppppp apgphlvqqq sthpqhsvah vvgpvhavav
     1621 apgshihsqa aghhlppppp ppgplphhqp phpstghqgl qaqhqhvvns apppppppps
     1681 gvigsghhpa saqglhhpsh qgpphfpsna htsvssyssq aphhttlgpg pqhqpagtgp
     1741 hcplpgqgph iqpqgpnsia tpaasgfcph pgsvalphgv qgpqqaspvp gqipihraqv
     1801 pptfqnnyhg sgwh
//
LOCUS       XP_053912371             740 aa            linear   VRT 09-MAR-2023
DEFINITION  SRSF protein kinase 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912371
VERSION     XP_053912371.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056396.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..740
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..740
                     /product="SRSF protein kinase 2 isoform X1"
                     /calculated_mol_wt=83903
     Region          87..>275
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(106..109,112,114,127,129,165,185..188,233,237..238,
                     240)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270870"
     Region          <322..401
                     /region_name="2A1904"
                     /note="K+-dependent Na+/Ca+ exchanger; TIGR00927"
                     /db_xref="CDD:273344"
     Region          <529..738
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     CDS             1..740
                     /gene="SRPK2"
                     /coded_by="XM_054056396.1:100..2322"
                     /db_xref="GeneID:104056099"
ORIGIN      
        1 mnsrkvlalq arrrrpkqst aagrrdkhpp shkkpepqqk apsapppppp ppppplpept
       61 ppepeeeilg sddeeqedpa dyckggyhpv kigdlfngry hvirklgwgh fstvwlcwdm
      121 qgkrfvamkv vksaqhytet aldeikllkc vresdpndpn kdmvvqlidd fkisgmngih
      181 vcmvfevlgh hllkwiiksn yqglpircvk siirqvlqgl dylhskckii htdikpenil
      241 mcvddayvrr maaeatewqk agapppsgsa vstapqqkpv gkisknkkkk lkkkqkrqae
      301 llekrlqeie elereaerkk ieenvtstvp sneqedeyhp evklktadie evvdeepgnd
      361 dgeaedqdek edtekentek dddveqelvn tdptdpkwie spktnghivn gpflleqqie
      421 dedeeeeecp npeeynldep naksdysyss syeqfngelp ngrhkipesq fsefsasvfs
      481 galesvacgs avseestvte reesspshdr srtvsasstg dlpktktraa dllvnpldpr
      541 nadkirvkia dlgnacwvhk hftediqtrq yrsievliga gystpadiws tacmafelat
      601 gdylfephsg edysrdedhi ahiiellgni prhfalsgky sreffnrrdh ialiiellgk
      661 iprkyamlgk yskefftkkg elrhitklkp wslfdvlvek ygwppedaaq ftdflipmle
      721 mvpekrasag eclrhpwlns
//
LOCUS       XP_053912372             720 aa            linear   VRT 09-MAR-2023
DEFINITION  SRSF protein kinase 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912372
VERSION     XP_053912372.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056397.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..720
                     /product="SRSF protein kinase 2 isoform X2"
                     /calculated_mol_wt=81488
     Region          67..>255
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(86..89,92,94,107,109,145,165..168,213,217..218,220)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270870"
     Region          <302..381
                     /region_name="2A1904"
                     /note="K+-dependent Na+/Ca+ exchanger; TIGR00927"
                     /db_xref="CDD:273344"
     Region          <509..718
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     CDS             1..720
                     /gene="SRPK2"
                     /coded_by="XM_054056397.1:16..2178"
                     /db_xref="GeneID:104056099"
ORIGIN      
        1 meraphaaav ralrpepqqk apsapppppp ppppplpept ppepeeeilg sddeeqedpa
       61 dyckggyhpv kigdlfngry hvirklgwgh fstvwlcwdm qgkrfvamkv vksaqhytet
      121 aldeikllkc vresdpndpn kdmvvqlidd fkisgmngih vcmvfevlgh hllkwiiksn
      181 yqglpircvk siirqvlqgl dylhskckii htdikpenil mcvddayvrr maaeatewqk
      241 agapppsgsa vstapqqkpv gkisknkkkk lkkkqkrqae llekrlqeie elereaerkk
      301 ieenvtstvp sneqedeyhp evklktadie evvdeepgnd dgeaedqdek edtekentek
      361 dddveqelvn tdptdpkwie spktnghivn gpflleqqie dedeeeeecp npeeynldep
      421 naksdysyss syeqfngelp ngrhkipesq fsefsasvfs galesvacgs avseestvte
      481 reesspshdr srtvsasstg dlpktktraa dllvnpldpr nadkirvkia dlgnacwvhk
      541 hftediqtrq yrsievliga gystpadiws tacmafelat gdylfephsg edysrdedhi
      601 ahiiellgni prhfalsgky sreffnrrdh ialiiellgk iprkyamlgk yskefftkkg
      661 elrhitklkp wslfdvlvek ygwppedaaq ftdflipmle mvpekrasag eclrhpwlns
//
LOCUS       XP_053912373             719 aa            linear   VRT 09-MAR-2023
DEFINITION  SRSF protein kinase 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912373
VERSION     XP_053912373.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056398.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..719
                     /product="SRSF protein kinase 2 isoform X3"
                     /calculated_mol_wt=81367
     Region          66..>254
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(85..88,91,93,106,108,144,164..167,212,216..217,219)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270870"
     Region          <301..380
                     /region_name="2A1904"
                     /note="K+-dependent Na+/Ca+ exchanger; TIGR00927"
                     /db_xref="CDD:273344"
     Region          <508..717
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     CDS             1..719
                     /gene="SRPK2"
                     /coded_by="XM_054056398.1:161..2320"
                     /db_xref="GeneID:104056099"
ORIGIN      
        1 msvnseksss serpepqqka psappppppp pppplpeptp pepeeeilgs ddeeqedpad
       61 yckggyhpvk igdlfngryh virklgwghf stvwlcwdmq gkrfvamkvv ksaqhyteta
      121 ldeikllkcv resdpndpnk dmvvqliddf kisgmngihv cmvfevlghh llkwiiksny
      181 qglpircvks iirqvlqgld ylhskckiih tdikpenilm cvddayvrrm aaeatewqka
      241 gapppsgsav stapqqkpvg kisknkkkkl kkkqkrqael lekrlqeiee lereaerkki
      301 eenvtstvps neqedeyhpe vklktadiee vvdeepgndd geaedqdeke dtekentekd
      361 ddveqelvnt dptdpkwies pktnghivng pflleqqied edeeeeecpn peeynldepn
      421 aksdysysss yeqfngelpn grhkipesqf sefsasvfsg alesvacgsa vseestvter
      481 eesspshdrs rtvsasstgd lpktktraad llvnpldprn adkirvkiad lgnacwvhkh
      541 ftediqtrqy rsievligag ystpadiwst acmafelatg dylfephsge dysrdedhia
      601 hiiellgnip rhfalsgkys reffnrrdhi aliiellgki prkyamlgky skefftkkge
      661 lrhitklkpw slfdvlveky gwppedaaqf tdflipmlem vpekrasage clrhpwlns
//
LOCUS       XP_053912375             719 aa            linear   VRT 09-MAR-2023
DEFINITION  SRSF protein kinase 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912375
VERSION     XP_053912375.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056400.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..719
                     /product="SRSF protein kinase 2 isoform X3"
                     /calculated_mol_wt=81367
     Region          66..>254
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(85..88,91,93,106,108,144,164..167,212,216..217,219)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270870"
     Region          <301..380
                     /region_name="2A1904"
                     /note="K+-dependent Na+/Ca+ exchanger; TIGR00927"
                     /db_xref="CDD:273344"
     Region          <508..717
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     CDS             1..719
                     /gene="SRPK2"
                     /coded_by="XM_054056400.1:143..2302"
                     /db_xref="GeneID:104056099"
ORIGIN      
        1 msvnseksss serpepqqka psappppppp pppplpeptp pepeeeilgs ddeeqedpad
       61 yckggyhpvk igdlfngryh virklgwghf stvwlcwdmq gkrfvamkvv ksaqhyteta
      121 ldeikllkcv resdpndpnk dmvvqliddf kisgmngihv cmvfevlghh llkwiiksny
      181 qglpircvks iirqvlqgld ylhskckiih tdikpenilm cvddayvrrm aaeatewqka
      241 gapppsgsav stapqqkpvg kisknkkkkl kkkqkrqael lekrlqeiee lereaerkki
      301 eenvtstvps neqedeyhpe vklktadiee vvdeepgndd geaedqdeke dtekentekd
      361 ddveqelvnt dptdpkwies pktnghivng pflleqqied edeeeeecpn peeynldepn
      421 aksdysysss yeqfngelpn grhkipesqf sefsasvfsg alesvacgsa vseestvter
      481 eesspshdrs rtvsasstgd lpktktraad llvnpldprn adkirvkiad lgnacwvhkh
      541 ftediqtrqy rsievligag ystpadiwst acmafelatg dylfephsge dysrdedhia
      601 hiiellgnip rhfalsgkys reffnrrdhi aliiellgki prkyamlgky skefftkkge
      661 lrhitklkpw slfdvlveky gwppedaaqf tdflipmlem vpekrasage clrhpwlns
//
LOCUS       XP_053912376             709 aa            linear   VRT 09-MAR-2023
DEFINITION  SRSF protein kinase 2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053912376
VERSION     XP_053912376.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056401.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..709
                     /product="SRSF protein kinase 2 isoform X4"
                     /calculated_mol_wt=80268
     Region          87..>275
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(106..109,112,114,127,129,165,185..188,233,237..238,
                     240)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270870"
     Region          <322..401
                     /region_name="2A1904"
                     /note="K+-dependent Na+/Ca+ exchanger; TIGR00927"
                     /db_xref="CDD:273344"
     Region          <529..707
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     CDS             1..709
                     /gene="SRPK2"
                     /coded_by="XM_054056401.1:111..2240"
                     /db_xref="GeneID:104056099"
ORIGIN      
        1 mnsrkvlalq arrrrpkqst aagrrdkhpp shkkpepqqk apsapppppp ppppplpept
       61 ppepeeeilg sddeeqedpa dyckggyhpv kigdlfngry hvirklgwgh fstvwlcwdm
      121 qgkrfvamkv vksaqhytet aldeikllkc vresdpndpn kdmvvqlidd fkisgmngih
      181 vcmvfevlgh hllkwiiksn yqglpircvk siirqvlqgl dylhskckii htdikpenil
      241 mcvddayvrr maaeatewqk agapppsgsa vstapqqkpv gkisknkkkk lkkkqkrqae
      301 llekrlqeie elereaerkk ieenvtstvp sneqedeyhp evklktadie evvdeepgnd
      361 dgeaedqdek edtekentek dddveqelvn tdptdpkwie spktnghivn gpflleqqie
      421 dedeeeeecp npeeynldep naksdysyss syeqfngelp ngrhkipesq fsefsasvfs
      481 galesvacgs avseestvte reesspshdr srtvsasstg dlpktktraa dllvnpldpr
      541 nadkirvkia dlgnacwvhk hftediqtrq yrsievliga gystpadiws tacmafelat
      601 gdylfephsg edysrdedhi ahiiellgni prhfalsgky sreffnrrge lrhitklkpw
      661 slfdvlveky gwppedaaqf tdflipmlem vpekrasage clrhpwlns
//
LOCUS       XP_053912377             709 aa            linear   VRT 09-MAR-2023
DEFINITION  SRSF protein kinase 2 isoform X5 [Cuculus canorus].
ACCESSION   XP_053912377
VERSION     XP_053912377.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056402.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..709
                     /product="SRSF protein kinase 2 isoform X5"
                     /calculated_mol_wt=80212
     Region          87..>275
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(106..109,112,114,127,129,165,185..188,233,237..238,
                     240)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270870"
     Region          <322..401
                     /region_name="2A1904"
                     /note="K+-dependent Na+/Ca+ exchanger; TIGR00927"
                     /db_xref="CDD:273344"
     Region          <527..707
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     CDS             1..709
                     /gene="SRPK2"
                     /coded_by="XM_054056402.1:111..2240"
                     /db_xref="GeneID:104056099"
ORIGIN      
        1 mnsrkvlalq arrrrpkqst aagrrdkhpp shkkpepqqk apsapppppp ppppplpept
       61 ppepeeeilg sddeeqedpa dyckggyhpv kigdlfngry hvirklgwgh fstvwlcwdm
      121 qgkrfvamkv vksaqhytet aldeikllkc vresdpndpn kdmvvqlidd fkisgmngih
      181 vcmvfevlgh hllkwiiksn yqglpircvk siirqvlqgl dylhskckii htdikpenil
      241 mcvddayvrr maaeatewqk agapppsgsa vstapqqkpv gkisknkkkk lkkkqkrqae
      301 llekrlqeie elereaerkk ieenvtstvp sneqedeyhp evklktadie evvdeepgnd
      361 dgeaedqdek edtekentek dddveqelvn tdptdpkwie spktnghivn gpflleqqie
      421 dedeeeeecp npeeynldep naksdysyss syeqfngelp ngrhkipesq fsefsasvfs
      481 galesvacgs avseestvte reesspshdr srtvsasstg dlpktktraa dllvnpldpr
      541 nadkirvkia dlgnacwvhk hftediqtrq yrsievliga gystpadiws tacmafelat
      601 gdylfephsg edysrdedhi aliiellgki prkyamlgky skefftkkge lrhitklkpw
      661 slfdvlveky gwppedaaqf tdflipmlem vpekrasage clrhpwlns
//
LOCUS       XP_053912378             583 aa            linear   VRT 09-MAR-2023
DEFINITION  SRSF protein kinase 2 isoform X6 [Cuculus canorus].
ACCESSION   XP_053912378
VERSION     XP_053912378.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056403.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..583
                     /product="SRSF protein kinase 2 isoform X6"
                     /calculated_mol_wt=66140
     Region          <24..>118
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Region          <165..244
                     /region_name="2A1904"
                     /note="K+-dependent Na+/Ca+ exchanger; TIGR00927"
                     /db_xref="CDD:273344"
     Region          <370..581
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     CDS             1..583
                     /gene="SRPK2"
                     /coded_by="XM_054056403.1:16..1767"
                     /db_xref="GeneID:104056099"
ORIGIN      
        1 masslkipae iiyleiilne vpdvcmvfev lghhllkwii ksnyqglpir cvksiirqvl
       61 qgldylhskc kiihtdikpe nilmcvdday vrrmaaeate wqkagappps gsavstapqq
      121 kpvgkisknk kkklkkkqkr qaellekrlq eieelereae rkkieenvts tvpsneqede
      181 yhpevklkta dieevvdeep gnddgeaedq dekedteken tekdddveqe lvntdptdpk
      241 wiespktngh ivngpflleq qiededeeee ecpnpeeynl depnaksdys ysssyeqfng
      301 elpngrhkip esqfsefsas vfsgalesva cgsavseest vtereessps hdrsrtvsas
      361 stgdlpktkt raadllvnpl dprnadkirv kiadlgnacw vhkhftediq trqyrsievl
      421 igagystpad iwstacmafe latgdylfep hsgedysrde dhiahiiell gniprhfals
      481 gkysreffnr rdhialiiel lgkiprkyam lgkyskefft kkgelrhitk lkpwslfdvl
      541 vekygwpped aaqftdflip mlemvpekra sageclrhpw lns
//
LOCUS       XP_009555604             244 aa            linear   VRT 09-MAR-2023
DEFINITION  LHFPL tetraspan subfamily member 3 protein isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009555604
VERSION     XP_009555604.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557309.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555604.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..244
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..244
                     /product="LHFPL tetraspan subfamily member 3 protein
                     isoform X1"
                     /calculated_mol_wt=26161
     Region          44..221
                     /region_name="L_HMGIC_fpl"
                     /note="Lipoma HMGIC fusion partner-like protein;
                     pfam10242"
                     /db_xref="CDD:463019"
     CDS             1..244
                     /gene="LHFPL3"
                     /coded_by="XM_009557309.2:95..829"
                     /db_xref="GeneID:104056100"
ORIGIN      
        1 mpgaaagtaa tgagssgaaa agmlpaqeaa kiyhtnyvrn sraigvlwai fticfaivnv
       61 vcfiqpywig dgvdtpqagy fglfhycign gfsreltcrg sftdfsslps gafkaasffi
      121 glsmmliiac ivcfilfffc ntatvykica wmqltsaacl vlgcmifpdg wdsdevkrmc
      181 gektdkytlg acsvrwayil aiigildali lsflafvlgn rqdsllaeel klenkvllsq
      241 ssle
//
LOCUS       XP_053912379             240 aa            linear   VRT 09-MAR-2023
DEFINITION  LHFPL tetraspan subfamily member 3 protein isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912379
VERSION     XP_053912379.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056404.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..240
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..240
                     /product="LHFPL tetraspan subfamily member 3 protein
                     isoform X2"
                     /calculated_mol_wt=25676
     Region          44..221
                     /region_name="L_HMGIC_fpl"
                     /note="Lipoma HMGIC fusion partner-like protein;
                     pfam10242"
                     /db_xref="CDD:463019"
     CDS             1..240
                     /gene="LHFPL3"
                     /coded_by="XM_054056404.1:98..820"
                     /db_xref="GeneID:104056100"
ORIGIN      
        1 mpgaaagtaa tgagssgaaa agmlpaqeaa kiyhtnyvrn sraigvlwai fticfaivnv
       61 vcfiqpywig dgvdtpqagy fglfhycign gfsreltcrg sftdfsslps gafkaasffi
      121 glsmmliiac ivcfilfffc ntatvykica wmqltsaacl vlgcmifpdg wdsdevkrmc
      181 gektdkytlg acsvrwayil aiigildali lsflafvlgn rqdsllaeel klenkddgna
//
LOCUS       XP_053912380             240 aa            linear   VRT 09-MAR-2023
DEFINITION  LHFPL tetraspan subfamily member 3 protein isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912380
VERSION     XP_053912380.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056405.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..240
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..240
                     /product="LHFPL tetraspan subfamily member 3 protein
                     isoform X2"
                     /calculated_mol_wt=25676
     Region          44..221
                     /region_name="L_HMGIC_fpl"
                     /note="Lipoma HMGIC fusion partner-like protein;
                     pfam10242"
                     /db_xref="CDD:463019"
     CDS             1..240
                     /gene="LHFPL3"
                     /coded_by="XM_054056405.1:101..823"
                     /db_xref="GeneID:104056100"
ORIGIN      
        1 mpgaaagtaa tgagssgaaa agmlpaqeaa kiyhtnyvrn sraigvlwai fticfaivnv
       61 vcfiqpywig dgvdtpqagy fglfhycign gfsreltcrg sftdfsslps gafkaasffi
      121 glsmmliiac ivcfilfffc ntatvykica wmqltsaacl vlgcmifpdg wdsdevkrmc
      181 gektdkytlg acsvrwayil aiigildali lsflafvlgn rqdsllaeel klenkddgna
//
LOCUS       XP_053912381             240 aa            linear   VRT 09-MAR-2023
DEFINITION  LHFPL tetraspan subfamily member 3 protein isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912381
VERSION     XP_053912381.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056406.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..240
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..240
                     /product="LHFPL tetraspan subfamily member 3 protein
                     isoform X2"
                     /calculated_mol_wt=25676
     Region          44..221
                     /region_name="L_HMGIC_fpl"
                     /note="Lipoma HMGIC fusion partner-like protein;
                     pfam10242"
                     /db_xref="CDD:463019"
     CDS             1..240
                     /gene="LHFPL3"
                     /coded_by="XM_054056406.1:101..823"
                     /db_xref="GeneID:104056100"
ORIGIN      
        1 mpgaaagtaa tgagssgaaa agmlpaqeaa kiyhtnyvrn sraigvlwai fticfaivnv
       61 vcfiqpywig dgvdtpqagy fglfhycign gfsreltcrg sftdfsslps gafkaasffi
      121 glsmmliiac ivcfilfffc ntatvykica wmqltsaacl vlgcmifpdg wdsdevkrmc
      181 gektdkytlg acsvrwayil aiigildali lsflafvlgn rqdsllaeel klenkddgna
//
LOCUS       XP_053912383             764 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC104058943 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912383
VERSION     XP_053912383.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056408.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..764
                     /product="uncharacterized protein LOC104058943 isoform X1"
                     /calculated_mol_wt=81642
     Region          91..380
                     /region_name="Indigoidine_A"
                     /note="Indigoidine synthase A like protein; pfam04227"
                     /db_xref="CDD:461231"
     Region          403..732
                     /region_name="YeiC_kinase_like"
                     /note="YeiC-like sugar kinase. Found in eukaryotes and
                     bacteria, YeiC-like kinase is part of the ribokinase/pfkB
                     sugar kinase superfamily. Its oligomerization state is
                     unknown at this time; cd01941"
                     /db_xref="CDD:238916"
     Site            order(444,696,699)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:238916"
     Site            order(597,644,694,697..698,701,723,726)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:238916"
     CDS             1..764
                     /gene="LOC104058943"
                     /coded_by="XM_054056408.1:16..2310"
                     /db_xref="GeneID:104058943"
ORIGIN      
        1 mgsvsqqhwa vhpgaaarpp sscllpglsr hcssthpasl hetdtkrtih mskmirkity
       61 slrkrvsava cgttqvrrfl hgayfrihps iqealmeerp vvalestiit hgmaypqnls
      121 markveeivt angavpatvg ilrgrihvgl tdeeleslas sknvvkvsrr dlpfvlsqgl
      181 sggttvsgtm iaahkagipv fvtggiggvh rggentldvs adltelgrtp vavvsagvks
      241 ildigrtley letqgvcvaa fgesrefpaf fsrqsgfqap yhvrneeeaa eliasalglg
      301 lssgvliavp cpqeraasgq vieeaiqqal searskgitg keltpfmlqk lneltdgksl
      361 dsnlaliqnn arvgsciava lnklqkarrk gnlphrentn paqpvviggi nvdfiakarn
      421 pvivgggqtn agrvrrtfgg vgrnlagayc lgllvdclsr lgqtplllsa mgkdehsesi
      481 lhychhmdms avlqlegkst atycavittt gelsvglgdm dihqqiteqy vsqfkqnlcq
      541 aplicidgnv plptiqyvcq larehqlavc yeptdenkas kpflsdswka ltyispnlqe
      601 lkainrtlrn plpaelpsrl edlvqtaval arpllahlcc vmvtlgahgv llcgkslggs
      661 islcpgahkq adaaslcath ypaihinree ivnvsgagds lmagilagil aehdtdtcvr
      721 mgllaaslsl rsyepispei stssvsqeev ksrswpemki wkmd
//
LOCUS       XP_009558828             755 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC104058943 isoform X2 [Cuculus canorus].
ACCESSION   XP_009558828
VERSION     XP_009558828.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560533.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009558828.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..755
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..755
                     /product="uncharacterized protein LOC104058943 isoform X2"
                     /calculated_mol_wt=80752
     Region          91..380
                     /region_name="Indigoidine_A"
                     /note="Indigoidine synthase A like protein; pfam04227"
                     /db_xref="CDD:461231"
     Region          403..723
                     /region_name="YeiC_kinase_like"
                     /note="YeiC-like sugar kinase. Found in eukaryotes and
                     bacteria, YeiC-like kinase is part of the ribokinase/pfkB
                     sugar kinase superfamily. Its oligomerization state is
                     unknown at this time; cd01941"
                     /db_xref="CDD:238916"
     Site            order(444,687,690)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:238916"
     Site            order(588,635,685,688..689,692,714,717)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:238916"
     CDS             1..755
                     /gene="LOC104058943"
                     /coded_by="XM_009560533.2:16..2283"
                     /db_xref="GeneID:104058943"
ORIGIN      
        1 mgsvsqqhwa vhpgaaarpp sscllpglsr hcssthpasl hetdtkrtih mskmirkity
       61 slrkrvsava cgttqvrrfl hgayfrihps iqealmeerp vvalestiit hgmaypqnls
      121 markveeivt angavpatvg ilrgrihvgl tdeeleslas sknvvkvsrr dlpfvlsqgl
      181 sggttvsgtm iaahkagipv fvtggiggvh rggentldvs adltelgrtp vavvsagvks
      241 ildigrtley letqgvcvaa fgesrefpaf fsrqsgfqap yhvrneeeaa eliasalglg
      301 lssgvliavp cpqeraasgq vieeaiqqal searskgitg keltpfmlqk lneltdgksl
      361 dsnlaliqnn arvgsciava lnklqkarrk gnlphrentn paqpvviggi nvdfiakarn
      421 pvivgggqtn agrvrrtfgg vgrnladcls rlgqtpllls amgkdehses ilhychhmdm
      481 savlqlegks tatycavitt tgelsvglgd mdihqqiteq yvsqfkqnlc qaplicidgn
      541 vplptiqyvc qlarehqlav cyeptdenka skpflsdswk altyispnlq elkainrtlr
      601 nplpaelpsr ledlvqtava larpllahlc cvmvtlgahg vllcgkslgg sislcpgahk
      661 qadaaslcat hypaihinre eivnvsgagd slmagilagi laehdtdtcv rmgllaasls
      721 lrsyepispe istssvsqee vksrswpemk iwkmd
//
LOCUS       XP_053912384             719 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC104058943 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912384
VERSION     XP_053912384.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056409.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..719
                     /product="uncharacterized protein LOC104058943 isoform X3"
                     /calculated_mol_wt=76932
     Region          46..335
                     /region_name="Indigoidine_A"
                     /note="Indigoidine synthase A like protein; pfam04227"
                     /db_xref="CDD:461231"
     Region          358..687
                     /region_name="YeiC_kinase_like"
                     /note="YeiC-like sugar kinase. Found in eukaryotes and
                     bacteria, YeiC-like kinase is part of the ribokinase/pfkB
                     sugar kinase superfamily. Its oligomerization state is
                     unknown at this time; cd01941"
                     /db_xref="CDD:238916"
     Site            order(399,651,654)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:238916"
     Site            order(552,599,649,652..653,656,678,681)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:238916"
     CDS             1..719
                     /gene="LOC104058943"
                     /coded_by="XM_054056409.1:90..2249"
                     /db_xref="GeneID:104058943"
ORIGIN      
        1 mktihmskmi rkityslrkr vsavacgttq vrrflhgayf rihpsiqeal meerpvvale
       61 stiithgmay pqnlsmarkv eeivtangav patvgilrgr ihvgltdeel eslassknvv
      121 kvsrrdlpfv lsqglsggtt vsgtmiaahk agipvfvtgg iggvhrggen tldvsadlte
      181 lgrtpvavvs agvksildig rtleyletqg vcvaafgesr efpaffsrqs gfqapyhvrn
      241 eeeaaelias alglglssgv liavpcpqer aasgqvieea iqqalsears kgitgkeltp
      301 fmlqklnelt dgksldsnla liqnnarvgs ciavalnklq karrkgnlph rentnpaqpv
      361 vigginvdfi akarnpvivg ggqtnagrvr rtfggvgrnl agayclgllv dclsrlgqtp
      421 lllsamgkde hsesilhych hmdmsavlql egkstatyca vitttgelsv glgdmdihqq
      481 iteqyvsqfk qnlcqaplic idgnvplpti qyvcqlareh qlavcyeptd enkaskpfls
      541 dswkaltyis pnlqelkain rtlrnplpae lpsrledlvq tavalarpll ahlccvmvtl
      601 gahgvllcgk slggsislcp gahkqadaas lcathypaih inreeivnvs gagdslmagi
      661 lagilaehdt dtcvrmglla aslslrsyep ispeistssv sqeevksrsw pemkiwkmd
//
LOCUS       XP_053912385             714 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC104058943 isoform X4 [Cuculus canorus].
ACCESSION   XP_053912385
VERSION     XP_053912385.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056410.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..714
                     /product="uncharacterized protein LOC104058943 isoform X4"
                     /calculated_mol_wt=76321
     Region          41..330
                     /region_name="Indigoidine_A"
                     /note="Indigoidine synthase A like protein; pfam04227"
                     /db_xref="CDD:461231"
     Region          353..682
                     /region_name="YeiC_kinase_like"
                     /note="YeiC-like sugar kinase. Found in eukaryotes and
                     bacteria, YeiC-like kinase is part of the ribokinase/pfkB
                     sugar kinase superfamily. Its oligomerization state is
                     unknown at this time; cd01941"
                     /db_xref="CDD:238916"
     Site            order(394,646,649)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:238916"
     Site            order(547,594,644,647..648,651,673,676)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:238916"
     CDS             1..714
                     /gene="LOC104058943"
                     /coded_by="XM_054056410.1:194..2338"
                     /db_xref="GeneID:104058943"
ORIGIN      
        1 mskmirkity slrkrvsava cgttqvrrfl hgayfrihps iqealmeerp vvalestiit
       61 hgmaypqnls markveeivt angavpatvg ilrgrihvgl tdeeleslas sknvvkvsrr
      121 dlpfvlsqgl sggttvsgtm iaahkagipv fvtggiggvh rggentldvs adltelgrtp
      181 vavvsagvks ildigrtley letqgvcvaa fgesrefpaf fsrqsgfqap yhvrneeeaa
      241 eliasalglg lssgvliavp cpqeraasgq vieeaiqqal searskgitg keltpfmlqk
      301 lneltdgksl dsnlaliqnn arvgsciava lnklqkarrk gnlphrentn paqpvviggi
      361 nvdfiakarn pvivgggqtn agrvrrtfgg vgrnlagayc lgllvdclsr lgqtplllsa
      421 mgkdehsesi lhychhmdms avlqlegkst atycavittt gelsvglgdm dihqqiteqy
      481 vsqfkqnlcq aplicidgnv plptiqyvcq larehqlavc yeptdenkas kpflsdswka
      541 ltyispnlqe lkainrtlrn plpaelpsrl edlvqtaval arpllahlcc vmvtlgahgv
      601 llcgkslggs islcpgahkq adaaslcath ypaihinree ivnvsgagds lmagilagil
      661 aehdtdtcvr mgllaaslsl rsyepispei stssvsqeev ksrswpemki wkmd
//
LOCUS       XP_053912386             714 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC104058943 isoform X4 [Cuculus canorus].
ACCESSION   XP_053912386
VERSION     XP_053912386.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056411.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..714
                     /product="uncharacterized protein LOC104058943 isoform X4"
                     /calculated_mol_wt=76321
     Region          41..330
                     /region_name="Indigoidine_A"
                     /note="Indigoidine synthase A like protein; pfam04227"
                     /db_xref="CDD:461231"
     Region          353..682
                     /region_name="YeiC_kinase_like"
                     /note="YeiC-like sugar kinase. Found in eukaryotes and
                     bacteria, YeiC-like kinase is part of the ribokinase/pfkB
                     sugar kinase superfamily. Its oligomerization state is
                     unknown at this time; cd01941"
                     /db_xref="CDD:238916"
     Site            order(394,646,649)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:238916"
     Site            order(547,594,644,647..648,651,673,676)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:238916"
     CDS             1..714
                     /gene="LOC104058943"
                     /coded_by="XM_054056411.1:277..2421"
                     /db_xref="GeneID:104058943"
ORIGIN      
        1 mskmirkity slrkrvsava cgttqvrrfl hgayfrihps iqealmeerp vvalestiit
       61 hgmaypqnls markveeivt angavpatvg ilrgrihvgl tdeeleslas sknvvkvsrr
      121 dlpfvlsqgl sggttvsgtm iaahkagipv fvtggiggvh rggentldvs adltelgrtp
      181 vavvsagvks ildigrtley letqgvcvaa fgesrefpaf fsrqsgfqap yhvrneeeaa
      241 eliasalglg lssgvliavp cpqeraasgq vieeaiqqal searskgitg keltpfmlqk
      301 lneltdgksl dsnlaliqnn arvgsciava lnklqkarrk gnlphrentn paqpvviggi
      361 nvdfiakarn pvivgggqtn agrvrrtfgg vgrnlagayc lgllvdclsr lgqtplllsa
      421 mgkdehsesi lhychhmdms avlqlegkst atycavittt gelsvglgdm dihqqiteqy
      481 vsqfkqnlcq aplicidgnv plptiqyvcq larehqlavc yeptdenkas kpflsdswka
      541 ltyispnlqe lkainrtlrn plpaelpsrl edlvqtaval arpllahlcc vmvtlgahgv
      601 llcgkslggs islcpgahkq adaaslcath ypaihinree ivnvsgagds lmagilagil
      661 aehdtdtcvr mgllaaslsl rsyepispei stssvsqeev ksrswpemki wkmd
//
LOCUS       XP_053912387             820 aa            linear   VRT 09-MAR-2023
DEFINITION  stromal interaction molecule 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912387
VERSION     XP_053912387.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056412.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..820
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..820
                     /product="stromal interaction molecule 1 isoform X1"
                     /calculated_mol_wt=91968
     Region          126..199
                     /region_name="SAM_STIM1"
                     /note="SAM domain of STIM1 subfamily proteins; cd09573"
                     /db_xref="CDD:188972"
     Site            order(130,150,161,177,190,196)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:188972"
     Region          242..>425
                     /region_name="DR0291"
                     /note="Predicted nucleic acid-binding protein DR0291,
                     contains C4-type Zn-ribbon domain [General function
                     prediction only]; COG1579"
                     /db_xref="CDD:441187"
     Region          340..439
                     /region_name="SOAR"
                     /note="STIM1 Orai1-activating region; pfam16533"
                     /db_xref="CDD:465164"
     CDS             1..820
                     /gene="STIM1"
                     /coded_by="XM_054056412.1:161..2623"
                     /db_xref="GeneID:104055993"
ORIGIN      
        1 mssskvmnrg mskagpllah vqllwtstpw sfstkqlssr sspaefcrid kplchdedeq
       61 lsfeavrnih kqmdddangn vdveesdefl redlnyhdpt vkhstfhged klisvedlwk
      121 awktsevynw tvdevvqwli tyvelpqyee tfrklqlsgh amprlavnnv tlmgsvlkmt
      181 drshrqklql kaldtvlfgp plltrhnhlk dfmlvvsivi gvggcwfayi qnryskehmk
      241 kmmkdleglh raeqslhdlq erlqkaqeeh rsvevekvhl ekklqdeisi akqeahrlre
      301 lregtenels rqkyaeqele qvrmalknae keleshcswa apealqkwlq lthevevqyy
      361 nikkhnaekq llvakegaek ikkkrntlfg tfhvahsssl ddvdhkilta kqalsevtaa
      421 lrerlhrwqq iellcgfqiv nnpgihslas alnidpswmg tprpnpshfi mtddvddlde
      481 eivspmsiqy aawlfgrrfs drsslsledq slwkypapal pgtvrqrlvd pqhahgsqrl
      541 vesyvqgqne sgqpahyrag rvslrrmhsl ssgqsfssdl pgtnpssaat tttscsssas
      601 tasapachvh ptyyhhttss yflqmdsipd lpppdvtsgv rchtesfgdl trcdsessip
      661 hlsdhqrips sapkllatrp nlltrsveea aasaptpngg nrpteavttl sespmvtkkm
      721 ttvvnhgmek ssslgeishp magkhshsds srshspsstd pdtpspisdc rpssakstri
      781 pqlaakkspg dedssltgde vdtgqskkkf plkifkkpkk
//
LOCUS       XP_053912389             819 aa            linear   VRT 09-MAR-2023
DEFINITION  stromal interaction molecule 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912389
VERSION     XP_053912389.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056414.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..819
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..819
                     /product="stromal interaction molecule 1 isoform X2"
                     /calculated_mol_wt=91897
     Region          125..198
                     /region_name="SAM_STIM1"
                     /note="SAM domain of STIM1 subfamily proteins; cd09573"
                     /db_xref="CDD:188972"
     Site            order(129,149,160,176,189,195)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:188972"
     Region          241..>424
                     /region_name="DR0291"
                     /note="Predicted nucleic acid-binding protein DR0291,
                     contains C4-type Zn-ribbon domain [General function
                     prediction only]; COG1579"
                     /db_xref="CDD:441187"
     Region          339..438
                     /region_name="SOAR"
                     /note="STIM1 Orai1-activating region; pfam16533"
                     /db_xref="CDD:465164"
     CDS             1..819
                     /gene="STIM1"
                     /coded_by="XM_054056414.1:18..2477"
                     /db_xref="GeneID:104055993"
ORIGIN      
        1 mssskvmnrg mskagpllah vqllwtstpw sfstkqlssr sspefcridk plchdedeql
       61 sfeavrnihk qmdddangnv dveesdeflr edlnyhdptv khstfhgedk lisvedlwka
      121 wktsevynwt vdevvqwlit yvelpqyeet frklqlsgha mprlavnnvt lmgsvlkmtd
      181 rshrqklqlk aldtvlfgpp lltrhnhlkd fmlvvsivig vggcwfayiq nryskehmkk
      241 mmkdleglhr aeqslhdlqe rlqkaqeehr svevekvhle kklqdeisia kqeahrlrel
      301 regtenelsr qkyaeqeleq vrmalknaek eleshcswaa pealqkwlql thevevqyyn
      361 ikkhnaekql lvakegaeki kkkrntlfgt fhvahsssld dvdhkiltak qalsevtaal
      421 rerlhrwqqi ellcgfqivn npgihslasa lnidpswmgt prpnpshfim tddvddldee
      481 ivspmsiqya awlfgrrfsd rsslsledqs lwkypapalp gtvrqrlvdp qhahgsqrlv
      541 esyvqgqnes gqpahyragr vslrrmhsls sgqsfssdlp gtnpssaatt ttscsssast
      601 asapachvhp tyyhhttssy flqmdsipdl pppdvtsgvr chtesfgdlt rcdsessiph
      661 lsdhqripss apkllatrpn lltrsveeaa asaptpnggn rpteavttls espmvtkkmt
      721 tvvnhgmeks sslgeishpm agkhshsdss rshspsstdp dtpspisdcr pssakstrip
      781 qlaakkspgd edssltgdev dtgqskkkfp lkifkkpkk
//
LOCUS       XP_053912390             810 aa            linear   VRT 09-MAR-2023
DEFINITION  stromal interaction molecule 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912390
VERSION     XP_053912390.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056415.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..810
                     /product="stromal interaction molecule 1 isoform X3"
                     /calculated_mol_wt=90561
     Region          116..189
                     /region_name="SAM_STIM1"
                     /note="SAM domain of STIM1 subfamily proteins; cd09573"
                     /db_xref="CDD:188972"
     Site            order(120,140,151,167,180,186)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:188972"
     Region          <221..>326
                     /region_name="PRK00409"
                     /note="recombination and DNA strand exchange inhibitor
                     protein; Reviewed"
                     /db_xref="CDD:234750"
     Region          330..429
                     /region_name="SOAR"
                     /note="STIM1 Orai1-activating region; pfam16533"
                     /db_xref="CDD:465164"
     CDS             1..810
                     /gene="STIM1"
                     /coded_by="XM_054056415.1:50..2482"
                     /db_xref="GeneID:104055993"
ORIGIN      
        1 maaaalgllc allllrgrae rppganldqa alaaefcrid kplchdedeq lsfeavrnih
       61 kqmdddangn vdveesdefl redlnyhdpt vkhstfhged klisvedlwk awktsevynw
      121 tvdevvqwli tyvelpqyee tfrklqlsgh amprlavnnv tlmgsvlkmt drshrqklql
      181 kaldtvlfgp plltrhnhlk dfmlvvsivi gvggcwfayi qnryskehmk kmmkdleglh
      241 raeqslhdlq erlqkaqeeh rsvevekvhl ekklqdeisi akqeahrlre lregtenels
      301 rqkyaeqele qvrmalknae keleshcswa apealqkwlq lthevevqyy nikkhnaekq
      361 llvakegaek ikkkrntlfg tfhvahsssl ddvdhkilta kqalsevtaa lrerlhrwqq
      421 iellcgfqiv nnpgihslas alnidpswmg tprpnpshfi mtddvddlde eivspmsiqy
      481 aawlfgrrfs drsslsledq slwkypapal pgtvrqrlvd pqhahgsqrl vesyvqgqne
      541 sgqpahyrag rvslrrmhsl ssgqsfssdl pgtnpssaat tttscsssas tasapachvh
      601 ptyyhhttss yflqmdsipd lpppdvtsgv rchtesfgdl trcdsessip hlsdhqrips
      661 sapkllatrp nlltrsveea aasaptpngg nrpteavttl sespmvtkkm ttvvnhgmek
      721 ssslgeishp magkhshsds srshspsstd pdtpspisdc rpssakstri pqlaakkspg
      781 dedssltgde vdtgqskkkf plkifkkpkk
//
LOCUS       XP_053912391             809 aa            linear   VRT 09-MAR-2023
DEFINITION  stromal interaction molecule 1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053912391
VERSION     XP_053912391.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056416.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..809
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..809
                     /product="stromal interaction molecule 1 isoform X4"
                     /calculated_mol_wt=90490
     Region          115..188
                     /region_name="SAM_STIM1"
                     /note="SAM domain of STIM1 subfamily proteins; cd09573"
                     /db_xref="CDD:188972"
     Site            order(119,139,150,166,179,185)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:188972"
     Region          <220..>325
                     /region_name="PRK00409"
                     /note="recombination and DNA strand exchange inhibitor
                     protein; Reviewed"
                     /db_xref="CDD:234750"
     Region          329..428
                     /region_name="SOAR"
                     /note="STIM1 Orai1-activating region; pfam16533"
                     /db_xref="CDD:465164"
     CDS             1..809
                     /gene="STIM1"
                     /coded_by="XM_054056416.1:57..2486"
                     /db_xref="GeneID:104055993"
ORIGIN      
        1 maaaalgllc allllrgrae rppganldqa alaefcridk plchdedeql sfeavrnihk
       61 qmdddangnv dveesdeflr edlnyhdptv khstfhgedk lisvedlwka wktsevynwt
      121 vdevvqwlit yvelpqyeet frklqlsgha mprlavnnvt lmgsvlkmtd rshrqklqlk
      181 aldtvlfgpp lltrhnhlkd fmlvvsivig vggcwfayiq nryskehmkk mmkdleglhr
      241 aeqslhdlqe rlqkaqeehr svevekvhle kklqdeisia kqeahrlrel regtenelsr
      301 qkyaeqeleq vrmalknaek eleshcswaa pealqkwlql thevevqyyn ikkhnaekql
      361 lvakegaeki kkkrntlfgt fhvahsssld dvdhkiltak qalsevtaal rerlhrwqqi
      421 ellcgfqivn npgihslasa lnidpswmgt prpnpshfim tddvddldee ivspmsiqya
      481 awlfgrrfsd rsslsledqs lwkypapalp gtvrqrlvdp qhahgsqrlv esyvqgqnes
      541 gqpahyragr vslrrmhsls sgqsfssdlp gtnpssaatt ttscsssast asapachvhp
      601 tyyhhttssy flqmdsipdl pppdvtsgvr chtesfgdlt rcdsessiph lsdhqripss
      661 apkllatrpn lltrsveeaa asaptpnggn rpteavttls espmvtkkmt tvvnhgmeks
      721 sslgeishpm agkhshsdss rshspsstdp dtpspisdcr pssakstrip qlaakkspgd
      781 edssltgdev dtgqskkkfp lkifkkpkk
//
LOCUS       XP_053912392             793 aa            linear   VRT 09-MAR-2023
DEFINITION  stromal interaction molecule 1 isoform X5 [Cuculus canorus].
ACCESSION   XP_053912392
VERSION     XP_053912392.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056417.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..793
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..793
                     /product="stromal interaction molecule 1 isoform X5"
                     /calculated_mol_wt=88722
     Region          126..199
                     /region_name="SAM_STIM1"
                     /note="SAM domain of STIM1 subfamily proteins; cd09573"
                     /db_xref="CDD:188972"
     Site            order(130,150,161,177,190,196)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:188972"
     Region          242..>425
                     /region_name="DR0291"
                     /note="Predicted nucleic acid-binding protein DR0291,
                     contains C4-type Zn-ribbon domain [General function
                     prediction only]; COG1579"
                     /db_xref="CDD:441187"
     Region          340..439
                     /region_name="SOAR"
                     /note="STIM1 Orai1-activating region; pfam16533"
                     /db_xref="CDD:465164"
     CDS             1..793
                     /gene="STIM1"
                     /coded_by="XM_054056417.1:24..2405"
                     /db_xref="GeneID:104055993"
ORIGIN      
        1 mssskvmnrg mskagpllah vqllwtstpw sfstkqlssr sspaefcrid kplchdedeq
       61 lsfeavrnih kqmdddangn vdveesdefl redlnyhdpt vkhstfhged klisvedlwk
      121 awktsevynw tvdevvqwli tyvelpqyee tfrklqlsgh amprlavnnv tlmgsvlkmt
      181 drshrqklql kaldtvlfgp plltrhnhlk dfmlvvsivi gvggcwfayi qnryskehmk
      241 kmmkdleglh raeqslhdlq erlqkaqeeh rsvevekvhl ekklqdeisi akqeahrlre
      301 lregtenels rqkyaeqele qvrmalknae keleshcswa apealqkwlq lthevevqyy
      361 nikkhnaekq llvakegaek ikkkrntlfg tfhvahsssl ddvdhkilta kqalsevtaa
      421 lrerlhrwqq iellcgfqiv nnpgihslas alnidpswmg tprpnpshfi mtddvddlde
      481 eivspmsiqs palpgtvrqr lvdpqhahgs qrlvesyvqg qnesgqpahy ragrvslrrm
      541 hslssgqsfs sdlpgtnpss aattttscss sastasapac hvhptyyhht tssyflqmds
      601 ipdlpppdvt sgvrchtesf gdltrcdses siphlsdhqr ipssapklla trpnlltrsv
      661 eeaaasaptp nggnrpteav ttlsespmvt kkmttvvnhg mekssslgei shpmagkhsh
      721 sdssrshsps stdpdtpspi sdcrpssaks tripqlaakk spgdedsslt gdevdtgqsk
      781 kkfplkifkk pkk
//
LOCUS       XP_053912393             783 aa            linear   VRT 09-MAR-2023
DEFINITION  stromal interaction molecule 1 isoform X6 [Cuculus canorus].
ACCESSION   XP_053912393
VERSION     XP_053912393.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056418.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..783
                     /product="stromal interaction molecule 1 isoform X6"
                     /calculated_mol_wt=87316
     Region          116..189
                     /region_name="SAM_STIM1"
                     /note="SAM domain of STIM1 subfamily proteins; cd09573"
                     /db_xref="CDD:188972"
     Site            order(120,140,151,167,180,186)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:188972"
     Region          <221..>326
                     /region_name="PRK00409"
                     /note="recombination and DNA strand exchange inhibitor
                     protein; Reviewed"
                     /db_xref="CDD:234750"
     Region          330..429
                     /region_name="SOAR"
                     /note="STIM1 Orai1-activating region; pfam16533"
                     /db_xref="CDD:465164"
     CDS             1..783
                     /gene="STIM1"
                     /coded_by="XM_054056418.1:50..2401"
                     /db_xref="GeneID:104055993"
ORIGIN      
        1 maaaalgllc allllrgrae rppganldqa alaaefcrid kplchdedeq lsfeavrnih
       61 kqmdddangn vdveesdefl redlnyhdpt vkhstfhged klisvedlwk awktsevynw
      121 tvdevvqwli tyvelpqyee tfrklqlsgh amprlavnnv tlmgsvlkmt drshrqklql
      181 kaldtvlfgp plltrhnhlk dfmlvvsivi gvggcwfayi qnryskehmk kmmkdleglh
      241 raeqslhdlq erlqkaqeeh rsvevekvhl ekklqdeisi akqeahrlre lregtenels
      301 rqkyaeqele qvrmalknae keleshcswa apealqkwlq lthevevqyy nikkhnaekq
      361 llvakegaek ikkkrntlfg tfhvahsssl ddvdhkilta kqalsevtaa lrerlhrwqq
      421 iellcgfqiv nnpgihslas alnidpswmg tprpnpshfi mtddvddlde eivspmsiqs
      481 palpgtvrqr lvdpqhahgs qrlvesyvqg qnesgqpahy ragrvslrrm hslssgqsfs
      541 sdlpgtnpss aattttscss sastasapac hvhptyyhht tssyflqmds ipdlpppdvt
      601 sgvrchtesf gdltrcdses siphlsdhqr ipssapklla trpnlltrsv eeaaasaptp
      661 nggnrpteav ttlsespmvt kkmttvvnhg mekssslgei shpmagkhsh sdssrshsps
      721 stdpdtpspi sdcrpssaks tripqlaakk spgdedsslt gdevdtgqsk kkfplkifkk
      781 pkk
//
LOCUS       XP_053912394             711 aa            linear   VRT 09-MAR-2023
DEFINITION  stromal interaction molecule 1 isoform X7 [Cuculus canorus].
ACCESSION   XP_053912394
VERSION     XP_053912394.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056419.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..711
                     /product="stromal interaction molecule 1 isoform X7"
                     /calculated_mol_wt=80424
     Region          126..199
                     /region_name="SAM_STIM1"
                     /note="SAM domain of STIM1 subfamily proteins; cd09573"
                     /db_xref="CDD:188972"
     Site            order(130,150,161,177,190,196)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:188972"
     Region          <231..>336
                     /region_name="PRK00409"
                     /note="recombination and DNA strand exchange inhibitor
                     protein; Reviewed"
                     /db_xref="CDD:234750"
     Region          340..439
                     /region_name="SOAR"
                     /note="STIM1 Orai1-activating region; pfam16533"
                     /db_xref="CDD:465164"
     CDS             1..711
                     /gene="STIM1"
                     /coded_by="XM_054056419.1:21..2156"
                     /db_xref="GeneID:104055993"
ORIGIN      
        1 mssskvmnrg mskagpllah vqllwtstpw sfstkqlssr sspaefcrid kplchdedeq
       61 lsfeavrnih kqmdddangn vdveesdefl redlnyhdpt vkhstfhged klisvedlwk
      121 awktsevynw tvdevvqwli tyvelpqyee tfrklqlsgh amprlavnnv tlmgsvlkmt
      181 drshrqklql kaldtvlfgp plltrhnhlk dfmlvvsivi gvggcwfayi qnryskehmk
      241 kmmkdleglh raeqslhdlq erlqkaqeeh rsvevekvhl ekklqdeisi akqeahrlre
      301 lregtenels rqkyaeqele qvrmalknae keleshcswa apealqkwlq lthevevqyy
      361 nikkhnaekq llvakegaek ikkkrntlfg tfhvahsssl ddvdhkilta kqalsevtaa
      421 lrerlhrwqq iellcgfqiv nnpgihslas alnidpswmg tprpnpshfi mtddvddlde
      481 eivspmsiqy aawlfgrrfs drsslsledq slwkypapal pgtvrqrlvd pqhahgsqrd
      541 ltrcdsessi phlsdhqrip ssapkllatr pnlltrsvee aaasaptpng gnrpteavtt
      601 lsespmvtkk mttvvnhgme kssslgeish pmagkhshsd ssrshspsst dpdtpspisd
      661 crpssakstr ipqlaakksp gdedssltgd evdtgqskkk fplkifkkpk k
//
LOCUS       XP_053912395             684 aa            linear   VRT 09-MAR-2023
DEFINITION  stromal interaction molecule 1 isoform X8 [Cuculus canorus].
ACCESSION   XP_053912395
VERSION     XP_053912395.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056420.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..684
                     /product="stromal interaction molecule 1 isoform X8"
                     /calculated_mol_wt=77179
     Region          126..199
                     /region_name="SAM_STIM1"
                     /note="SAM domain of STIM1 subfamily proteins; cd09573"
                     /db_xref="CDD:188972"
     Site            order(130,150,161,177,190,196)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:188972"
     Region          <231..>336
                     /region_name="PRK00409"
                     /note="recombination and DNA strand exchange inhibitor
                     protein; Reviewed"
                     /db_xref="CDD:234750"
     Region          340..439
                     /region_name="SOAR"
                     /note="STIM1 Orai1-activating region; pfam16533"
                     /db_xref="CDD:465164"
     CDS             1..684
                     /gene="STIM1"
                     /coded_by="XM_054056420.1:20..2074"
                     /db_xref="GeneID:104055993"
ORIGIN      
        1 mssskvmnrg mskagpllah vqllwtstpw sfstkqlssr sspaefcrid kplchdedeq
       61 lsfeavrnih kqmdddangn vdveesdefl redlnyhdpt vkhstfhged klisvedlwk
      121 awktsevynw tvdevvqwli tyvelpqyee tfrklqlsgh amprlavnnv tlmgsvlkmt
      181 drshrqklql kaldtvlfgp plltrhnhlk dfmlvvsivi gvggcwfayi qnryskehmk
      241 kmmkdleglh raeqslhdlq erlqkaqeeh rsvevekvhl ekklqdeisi akqeahrlre
      301 lregtenels rqkyaeqele qvrmalknae keleshcswa apealqkwlq lthevevqyy
      361 nikkhnaekq llvakegaek ikkkrntlfg tfhvahsssl ddvdhkilta kqalsevtaa
      421 lrerlhrwqq iellcgfqiv nnpgihslas alnidpswmg tprpnpshfi mtddvddlde
      481 eivspmsiqs palpgtvrqr lvdpqhahgs qrdltrcdse ssiphlsdhq ripssapkll
      541 atrpnlltrs veeaaasapt pnggnrptea vttlsespmv tkkmttvvnh gmekssslge
      601 ishpmagkhs hsdssrshsp sstdpdtpsp isdcrpssak stripqlaak kspgdedssl
      661 tgdevdtgqs kkkfplkifk kpkk
//
LOCUS       XP_053912396             673 aa            linear   VRT 09-MAR-2023
DEFINITION  stromal interaction molecule 1 isoform X9 [Cuculus canorus].
ACCESSION   XP_053912396
VERSION     XP_053912396.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056421.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..673
                     /product="stromal interaction molecule 1 isoform X9"
                     /calculated_mol_wt=75701
     Region          115..188
                     /region_name="SAM_STIM1"
                     /note="SAM domain of STIM1 subfamily proteins; cd09573"
                     /db_xref="CDD:188972"
     Site            order(119,139,150,166,179,185)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:188972"
     Region          <220..>325
                     /region_name="PRK00409"
                     /note="recombination and DNA strand exchange inhibitor
                     protein; Reviewed"
                     /db_xref="CDD:234750"
     Region          329..428
                     /region_name="SOAR"
                     /note="STIM1 Orai1-activating region; pfam16533"
                     /db_xref="CDD:465164"
     CDS             1..673
                     /gene="STIM1"
                     /coded_by="XM_054056421.1:57..2078"
                     /db_xref="GeneID:104055993"
ORIGIN      
        1 maaaalgllc allllrgrae rppganldqa alaefcridk plchdedeql sfeavrnihk
       61 qmdddangnv dveesdeflr edlnyhdptv khstfhgedk lisvedlwka wktsevynwt
      121 vdevvqwlit yvelpqyeet frklqlsgha mprlavnnvt lmgsvlkmtd rshrqklqlk
      181 aldtvlfgpp lltrhnhlkd fmlvvsivig vggcwfayiq nryskehmkk mmkdleglhr
      241 aeqslhdlqe rlqkaqeehr svevekvhle kklqdeisia kqeahrlrel regtenelsr
      301 qkyaeqeleq vrmalknaek eleshcswaa pealqkwlql thevevqyyn ikkhnaekql
      361 lvakegaeki kkkrntlfgt fhvahsssld dvdhkiltak qalsevtaal rerlhrwqqi
      421 ellcgfqivn npgihslasa lnidpswmgt prpnpshfim tddvddldee ivspmsiqsp
      481 alpgtvrqrl vdpqhahgsq rdltrcdses siphlsdhqr ipssapklla trpnlltrsv
      541 eeaaasaptp nggnrpteav ttlsespmvt kkmttvvnhg mekssslgei shpmagkhsh
      601 sdssrshsps stdpdtpspi sdcrpssaks tripqlaakk spgdedsslt gdevdtgqsk
      661 kkfplkifkk pkk
//
LOCUS       XP_053912397             191 aa            linear   VRT 09-MAR-2023
DEFINITION  rho-related GTP-binding protein RhoG [Cuculus canorus].
ACCESSION   XP_053912397
VERSION     XP_053912397.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056422.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..191
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..191
                     /product="rho-related GTP-binding protein RhoG"
                     /calculated_mol_wt=21289
     Region          1..191
                     /region_name="P-loop containing Nucleoside Triphosphate
                     Hydrolases"
                     /note="Members of the P-loop NTPase domain superfamily are
                     characterized by a conserved nucleotide phosphate-binding
                     motif, also referred to as the Walker A motif
                     (GxxxxGK[S/T], where x is any residue), and the Walker B
                     motif (hhhh[D/E], where h is a...; cl38936"
                     /db_xref="CDD:476819"
     Site            10..17
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206648"
     Site            order(12..18,60,115..116,118,158..160)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206648"
     Site            35
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206648"
     Site            38..40
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206648"
     Site            57..60
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206648"
     Site            order(59..60,76..77)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206648"
     Site            115..118
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206648"
     Site            158..160
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206648"
     CDS             1..191
                     /gene="RHOG"
                     /coded_by="XM_054056422.1:185..760"
                     /db_xref="GeneID:104055936"
ORIGIN      
        1 mqsikcvvvg dgavgktcll icyttnafpk eyiptvfdny saqntvdgrt inlnlwdtag
       61 qeeydrlrtl sypqtnvfii cfsiasppsy envkhkwype vchhcpsvpi llvgtkkdlr
      121 nnaetmkrlk eqnqapittq qgislskqir avkylecsal nqegikdvft eavravlnpi
      181 pakpkkpcvl l
//
LOCUS       XP_053912399             194 aa            linear   VRT 09-MAR-2023
DEFINITION  cysteine and glycine-rich protein 2 [Cuculus canorus].
ACCESSION   XP_053912399
VERSION     XP_053912399.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056424.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..194
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..194
                     /product="cysteine and glycine-rich protein 2"
                     /calculated_mol_wt=20709
     Region          9..63
                     /region_name="LIM1_CRP2"
                     /note="The first LIM domain of Cysteine Rich Protein 2
                     (CRP2); cd09480"
                     /db_xref="CDD:188864"
     Site            order(10,13,31,34,37,40,58,61)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188864"
     Region          120..173
                     /region_name="LIM2_CRP2"
                     /note="The second LIM domain of Cysteine Rich Protein 2
                     (CRP2); cd09840"
                     /db_xref="CDD:188871"
     Site            order(120,123,141,144,147,150,168,171)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188871"
     CDS             1..194
                     /gene="CSRP2"
                     /coded_by="XM_054056424.1:138..722"
                     /db_xref="GeneID:104061157"
ORIGIN      
        1 mpnwgggnkc gacgrtvyha eevqcdgrsf hrccflcmvc rknldsttva ihgaevycks
       61 cygkkygpkg ygygqgagtl nmdrgerlgi kpestpsphr pttspntskf aqkfggaekc
      121 srcgdsvyaa ekvigagkpw hkncfrcakc gkslesttlt ekegeiyckg cyaknfgpkg
      181 fgygqgagal vhaq
//
LOCUS       XP_009555267             159 aa            linear   VRT 09-MAR-2023
DEFINITION  phospholipase A2 [Cuculus canorus].
ACCESSION   XP_009555267
VERSION     XP_009555267.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556972.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..159
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..159
                     /product="phospholipase A2"
                     /calculated_mol_wt=17730
     Region          30..144
                     /region_name="PLA2c"
                     /note="Phospholipase A2, a family of secretory and
                     cytosolic enzymes; the latter are either Ca dependent or
                     Ca independent. PLA2 cleaves the sn-2 position of the
                     glycerol backbone of phospholipids (PC or
                     phosphatidylethanolamine), usually in a
                     metal-dependent...; cd00125"
                     /db_xref="CDD:153091"
     Site            order(31,34,38,47,58,90)
                     /site_type="active"
                     /note="putative hydrophobic channel [active]"
                     /db_xref="CDD:153091"
     Site            order(55,57,59,76)
                     /site_type="other"
                     /note="primary metal binding site"
                     /db_xref="CDD:153091"
     Site            order(57,75..76,79,94,120)
                     /site_type="active"
                     /note="catalytic network [active]"
                     /db_xref="CDD:153091"
     CDS             1..159
                     /gene="LOC104055793"
                     /coded_by="XM_009556972.2:8896..9375"
                     /db_xref="GeneID:104055793"
ORIGIN      
        1 mgshllmmlm llqavwkgal gkshslhtrg iielagaisc gtgrsplayi gygcycglgg
       61 qgwpkdktdw cchrhdccyd kaekegcnpk aqrykwecee ntvqcdnvtd rcekmaclcd
      121 qeaakcwgaa qynphlilwp dflcghthpt chfryegpe
//
LOCUS       XP_053912400             341 aa            linear   VRT 09-MAR-2023
DEFINITION  39S ribosomal protein L39, mitochondrial [Cuculus canorus].
ACCESSION   XP_053912400
VERSION     XP_053912400.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056425.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..341
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..341
                     /product="39S ribosomal protein L39, mitochondrial"
                     /calculated_mol_wt=39382
     Region          33..>317
                     /region_name="PLN02908"
                     /note="threonyl-tRNA synthetase"
                     /db_xref="CDD:178496"
     CDS             1..341
                     /gene="MRPL39"
                     /coded_by="XM_054056425.1:77..1102"
                     /db_xref="GeneID:104064802"
ORIGIN      
        1 maarwvvrgl rggkggrrfi sipadlrlts deviqmrnel ftkekerqls lypriekiev
       61 kytgkshpgt vfvmnkalst pyncamhlse whckksvlal vdgevwdmyr pltksceiqf
      121 ltfkdedpee vnkaywrsca mimacvlkra fkdeysvnli kapevpvisg afcydvildn
      181 rlndwkptnd nfrsltrdak klihkdlpfe tlhveakvar emfqhnrykm eiieqkasqn
      241 aegnvtlhrf gdfvdvsegp hiprtsfcfq yeitaahnlh tnqselirrf qgvslpvhlk
      301 ahhtvwrkll erskrlvsde kyleaaaeae dgneeekpls i
//
LOCUS       XP_009554702             462 aa            linear   VRT 09-MAR-2023
DEFINITION  prosaposin receptor GPR37 [Cuculus canorus].
ACCESSION   XP_009554702
VERSION     XP_009554702.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556407.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554702.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..462
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..462
                     /product="prosaposin receptor GPR37"
                     /calculated_mol_wt=50251
     Region          111..409
                     /region_name="7tmA_GPR37"
                     /note="G protein-coupled receptor 37, member of the class
                     A family of seven-transmembrane G protein-coupled
                     receptors; cd15127"
                     /db_xref="CDD:320255"
     Region          112..138
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320255"
     Region          145..171
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320255"
     Site            order(167,170..171,183..188,190..191,194,240,242..246,288,
                     291..293,295..297,299..300,354,357..358,360..361,364,
                     376..377,379..381,384,387..388)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:320255"
     Region          183..213
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320255"
     Region          226..246
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320255"
     Region          288..313
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320255"
     Region          334..364
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320255"
     Region          377..402
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320255"
     CDS             1..462
                     /gene="GPR37"
                     /coded_by="XM_009556407.2:87..1475"
                     /db_xref="GeneID:104055297"
ORIGIN      
        1 mqplgaplal lcqllgawaa capapaapag ltapssappa raaagpsaap gpggscgaag
       61 sgrrrarsgd gaggaprwlp lngsagrngt grrarlrnpf yplteesyga yavmclsvvi
      121 fgigimgnma vmcivchnyy mrsisnslla nlafwdfliv ffclplvifq eltkkwlled
      181 fsckivpyie vaslgvttft lcalcidrfr aatnvqmyye mienctstta klaviwvgal
      241 llalpevvlr qltredpeys gsppgercvv kisttlpdti yvlaltydga rlwwyfgcyf
      301 clptlftitc slvtarkirr aekactrgnk rqiqlesqmn ctvvaltily gfciipenic
      361 nivtaymstg vsrqtmdllh lisqfllffk scvtpvllfc lckpfsrafm eccccccdec
      421 iqksstvtsd dndneyttel elspfstirr emstfasvgt hc
//
LOCUS       XP_053912401             685 aa            linear   VRT 09-MAR-2023
DEFINITION  probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Cuculus
            canorus].
ACCESSION   XP_053912401
VERSION     XP_053912401.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056426.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..685
                     /product="probable 28S rRNA
                     (cytosine(4447)-C(5))-methyltransferase"
                     /calculated_mol_wt=76402
     Region          317..591
                     /region_name="nop2p"
                     /note="NOL1/NOP2/sun family putative RNA methylase;
                     TIGR00446"
                     /db_xref="CDD:188051"
     CDS             1..685
                     /gene="NOP2"
                     /coded_by="XM_054056426.1:66..2123"
                     /db_xref="GeneID:104064403"
ORIGIN      
        1 mgrkldptrk ekrgpgrkar kqrgaevela rflppepeag rkklsshgrr raakrrlaag
       61 rspatggggr gpeikeqvsp qkqkpavkta gqtphrqsgf sddnskwlap akakktpskg
      121 nnmelssdge veesiwemee eedgsseemv ddygasssee eellpiekaa lkqkadrggl
      181 seddseeeee ekeaaeeart qkmgqkeees pdlqlnldid eqfklptneq iereaveppd
      241 lhiihqrikg nmevlqdfav kreegrtrqe ylallrrdma ayysysdfll lklmdifplp
      301 elinfleane vprpvtirtn tlktrrrdla qalinrgvnl dplgkwsktg lviydssvpi
      361 gatpeylagh ymlqgassll pvmalapqen erildmccap ggktsyiaql mkntgvilan
      421 dsnaerlrsv vgnlhrlgvt navvsncdgr qfpkvlggfd rvlldapcsg tgviskdpav
      481 ktnkdekdil rcahlqkeli lnaidsvnaa setggyivyc tcsvmveene wvvdyalkkr
      541 nvrlvdtgld fgkegftrfk drrfhpslks trrfyphthn mdgffiaklk kfsnaipqaq
      601 kdeepavvaa tpstvpntvm epqpkkkkle gskvdkeqkp pqpalkkrht lqaqrrplkt
      661 grpsaktmrp qvpgrkkhrv kqkgq
//
LOCUS       XP_053912402             154 aa            linear   VRT 09-MAR-2023
DEFINITION  augurin [Cuculus canorus].
ACCESSION   XP_053912402
VERSION     XP_053912402.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056427.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..154
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..154
                     /product="augurin"
                     /calculated_mol_wt=17701
     Region          38..154
                     /region_name="Augurin"
                     /note="Oesophageal cancer-related gene 4; pfam15187"
                     /db_xref="CDD:464552"
     CDS             1..154
                     /gene="ECRG4"
                     /coded_by="XM_054056427.1:192..656"
                     /db_xref="GeneID:104056684"
ORIGIN      
        1 mqppcprgtl pgaaffllll llcllpllcg apdvsrgnkl klmlqkreap vatkpevsvk
       61 etaakeflss lrrqrrqlwd rsqpdvqqwy qqflylgfde akfeddmsyw tslgrarney
      121 yggyyqhhyd edspigpqnp htfrhgagvn yddy
//
LOCUS       XP_053912404             154 aa            linear   VRT 09-MAR-2023
DEFINITION  augurin [Cuculus canorus].
ACCESSION   XP_053912404
VERSION     XP_053912404.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056429.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..154
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..154
                     /product="augurin"
                     /calculated_mol_wt=17701
     Region          38..154
                     /region_name="Augurin"
                     /note="Oesophageal cancer-related gene 4; pfam15187"
                     /db_xref="CDD:464552"
     CDS             1..154
                     /gene="ECRG4"
                     /coded_by="XM_054056429.1:435..899"
                     /db_xref="GeneID:104056684"
ORIGIN      
        1 mqppcprgtl pgaaffllll llcllpllcg apdvsrgnkl klmlqkreap vatkpevsvk
       61 etaakeflss lrrqrrqlwd rsqpdvqqwy qqflylgfde akfeddmsyw tslgrarney
      121 yggyyqhhyd edspigpqnp htfrhgagvn yddy
//
LOCUS       XP_053912405             108 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase RBX1 [Cuculus canorus].
ACCESSION   XP_053912405
VERSION     XP_053912405.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056430.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..108
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..108
                     /product="E3 ubiquitin-protein ligase RBX1"
                     /calculated_mol_wt=12143
     Region          40..101
                     /region_name="mRING-H2-C3H2C2D_RBX1"
                     /note="modified RING finger, H2 subclass (C3H2C2D-type),
                     found in RING-box protein 1 (RBX1) and similar proteins;
                     cd16485"
                     /db_xref="CDD:438148"
     Site            order(72,74,76,81,85,89)
                     /site_type="other"
                     /note="cullin binding site [polypeptide binding]"
                     /db_xref="CDD:438148"
     CDS             1..108
                     /gene="RBX1"
                     /coded_by="XM_054056430.1:83..409"
                     /db_xref="GeneID:104055502"
ORIGIN      
        1 maaamdvdtp sgtnsgagkk rfevkkwnav alwawdivvd ncaicrnhim dlciecqanq
       61 asatseectv awgvcnhafh fhcisrwlkt rqvcpldnre wefqkygh
//
LOCUS       XP_053912406             168 aa            linear   VRT 09-MAR-2023
DEFINITION  chemokine-like protein TAFA-5 [Cuculus canorus].
ACCESSION   XP_053912406
VERSION     XP_053912406.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056431.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..168
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..168
                     /product="chemokine-like protein TAFA-5"
                     /calculated_mol_wt=18332
     Region          78..167
                     /region_name="TAFA"
                     /note="TAFA family; pfam12020"
                     /db_xref="CDD:432266"
     CDS             1..168
                     /gene="TAFA5"
                     /coded_by="XM_054056431.1:338..844"
                     /db_xref="GeneID:104064827"
ORIGIN      
        1 mapsprrssr kdasalpsms stfwaimila slliaycnyn syfgadnpqw lymrhcpgcf
       61 qdafelegpl evcgqlaagt ceivtldrds sqprrtiarq tarcackkgq iagttrarpa
      121 cvdariiktk qwcemlpcle gegcdllink sgwtctqpgg riktttvs
//
LOCUS       XP_053912408             344 aa            linear   VRT 09-MAR-2023
DEFINITION  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1
            [Cuculus canorus].
ACCESSION   XP_053912408
VERSION     XP_053912408.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056433.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..344
                     /product="galactosylgalactosylxylosylprotein
                     3-beta-glucuronosyltransferase 1"
                     /calculated_mol_wt=38879
     Region          94..325
                     /region_name="GlcAT-I"
                     /note="Beta1,3-glucuronyltransferase I (GlcAT-I) is
                     involved in the initial steps of proteoglycan synthesis;
                     cd00218"
                     /db_xref="CDD:132995"
     Site            order(103,132,205..208,238,255,259,264,294,321)
                     /site_type="active"
                     /db_xref="CDD:132995"
     Site            order(106..107,109..111,113..114,117..118,120..121,209,
                     211..213,231,236..237,252,254,317,320,322,324..325)
                     /site_type="active"
                     /note="putative dimerization interface [active]"
                     /db_xref="CDD:132995"
     Site            205..207
                     /site_type="active"
                     /note="DXD motif [active]"
                     /db_xref="CDD:132995"
     CDS             1..344
                     /gene="LOC104055803"
                     /coded_by="XM_054056433.1:424..1458"
                     /db_xref="GeneID:104055803"
ORIGIN      
        1 mlrrrnlltt llialpwall ltlwhqyptt rylslirket denvtskall ngtsalreeg
       61 lpscirqqqs igatpkviqn yvysrpppws dtlptifvit ptytrpvqka eltrlantfl
      121 hvqnlhwvvv edsprrtnlv snllekagln fthlnvetpk slkvglswip shtprgtlqr
      181 nlglhwlrns fsntpppegv vyfadddnty slelfeemry trrvsvwpva fvgglryesp
      241 kvspagkvvg wktvfdpnrp faidmagfai siklilekph asfklegvkg gyqetsllkd
      301 lvtmdglepk aanctkvlvw htrterptlv negkrgftdp rvev
//
LOCUS       XP_053912409            5237 aa            linear   VRT 09-MAR-2023
DEFINITION  protein piccolo [Cuculus canorus].
ACCESSION   XP_053912409
VERSION     XP_053912409.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056434.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5237
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..5237
                     /product="protein piccolo"
                     /calculated_mol_wt=572225
     Region          <223..743
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          453..514
                     /region_name="FYVE1_PCLO"
                     /note="FYVE-related domain 1 found in protein piccolo;
                     cd15774"
                     /db_xref="CDD:277313"
     Region          <540..1046
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          923..986
                     /region_name="FYVE2_PCLO"
                     /note="FYVE-related domain 2 found in protein piccolo;
                     cd15776"
                     /db_xref="CDD:277315"
     Region          <1031..1646
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          <2373..2654
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <3785..3848
                     /region_name="CCDC47"
                     /note="PAT complex subunit CCDC47; cl46382"
                     /db_xref="CDD:480722"
     Region          <3879..>4000
                     /region_name="PRK10263"
                     /note="DNA translocase FtsK; Provisional"
                     /db_xref="CDD:236669"
     Region          4527..4622
                     /region_name="PDZ_RIM-like"
                     /note="PDZ domain of Rab3-interacting molecule 1 (RIM),
                     RIM2, piccolo and related domains; cd06714"
                     /db_xref="CDD:467198"
     Site            order(4547..4553,4570,4573,4603,4607,4610..4611)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467198"
     Region          4728..4862
                     /region_name="C2A_RIM1alpha"
                     /note="C2 domain first repeat contained in
                     Rab3-interacting molecule (RIM) proteins; cd04031"
                     /db_xref="CDD:175997"
     Site            order(4759,4765,4829,4831,4837)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:175997"
     Region          5104..5229
                     /region_name="C2"
                     /note="C2 domain; cl14603"
                     /db_xref="CDD:472691"
     CDS             1..5237
                     /gene="PCLO"
                     /coded_by="XM_054056434.1:16..15729"
                     /db_xref="GeneID:104066038"
ORIGIN      
        1 mgneaslegg eglgalpega aaggdgggpa apgqrlvpag veadlsrlse eerrqiaavm
       61 sraqglprgn lagaepppmq rhpeldtsrh prqpgkppdp gppslsksrt vdvlkteqra
      121 pgrspssisl resksrtdfk edqkpsmmps flseanplsa vtsvvnkfnp fdlisdsdaa
      181 heeagkkqka tqkeqgkpee qrgpakhpaq qqspksavqq qgpvrptpqq tesskpvpqq
      241 qqpgepkqaq kpspghpads kqeqarqpaq prgpqksqpq qseptkpvqa sakpssgptk
      301 pspqqsdsar tssqappptk pssqqpgpvk qasqqparqg gpakpssqqa gppkqpsqqp
      361 gpekpsaqqt gptkqplqpg pgkpppqqtg pvkqvqpqag ptkpssqtag atkppaqqpg
      421 ftkppgqqpe pekpsqqkqa gatqppesap kktfcplctt telllhapek anyntctqch
      481 tvvcslcgfn pnphiteike wlclncqmqr alggdlapgh gpgpqppppk qktpvppsta
      541 kppvqpqpvq kkdaspkpdp sqiaeskktl pqkkqpslpg sppvkskqpr aepaeisqqv
      601 dpapksdqak ptqtedkqnq stiqkpttdt vptsaapgpk qdsagpkppp tqqkvtdspk
      661 pelakpsqdt hstadkpdsk plpqvsrqks dpklvsqpga rpdaktqkpv eptqtkddpk
      721 klqtkvapkp dtkpapkgpq agagpkpapt qpvpqpqppq ktpeqsrrfs lnlggitdap
      781 kpqpttpqet vtgklfgfga sifsqasnli stagqpgsqt sappppgpaa kqpqpppqpp
      841 asqaapkeag qaqplpkavp vkkeakplmt eksepskads vlttkgsdle kkpglakdsk
      901 pqaaeakkla glsepekasq pevscplckt glnigskdpp nfntcteckk vvcnlcgfnp
      961 mphiaevqew lclncqtqra msgqlgdmgk vplpktgspq pvskppatpq kqpvpaashs
     1021 pqktstpptp atakpkeepg vqkdvpksqq grlektlsad kiqqgiqked aklkqgklvk
     1081 apsadkiqra sqkedtrvqq tkltktassd kilhgvqked akfqeaklak tssadkilhg
     1141 vpkedvklqe aklaktpsad kilhgiqked pklqqvkmak alsadkiqpa aqkedaqlqe
     1201 vkmpkavsvd kiqhgiqked tkhqqdkivk tssvekiqqe tqkeesklqq gkpsktlsad
     1261 kipassdqkk plstvqedkk tllpekstph pedkkeqita etkdrvaeqk veveasykel
     1321 eakkqedvtk eglttgisqi ilkaekaqee eipdktaplp rtdhveavke kiekeddksd
     1381 tsssqqqksp qglsdtgyss dgissslgei pshipsdekd llkesnkkps isqesppsps
     1441 dlaklestvl sileaqastl sdeksvkske lyetyseqan dqhktkplpv tpesyssdee
     1501 dleaiqeger tivedgkgsa sswaayreee egddilarrq rydsvedsse senspiprrk
     1561 rrasvgssss deykrddsqg sgdeedfirk qiiemsaded asgseddqfi rnqlkeisat
     1621 esqkkdevks ktkvtagkhr rmtrkssagy dedvgrrhsw hddddetfde spgpkyretk
     1681 sqdseeltvt gggglrrfkt ielnstitnk ysetsekqkg ilyfdeepel emesltdspe
     1741 drsrgegsss lhassftpgt sptsvsslde dsdsspshkk lggeskqqrk arhrshgpll
     1801 ptiedsseee elreeeellk eqekqreleq qqrkssskks kkdkdelraq rrrerpktpp
     1861 snlspiedas pteelrqaae meelhrsscs eyspsiesdp egfeispeki ievqkvyklp
     1921 tavslysptd eqpvglpkqe sgqktlksae evyeemmhkt hksksfqitn ekdevfekes
     1981 lyggmliedy iyeslvedsy ngtidanlvm rqdesseyiq qrgkdkkira seqiyeepqk
     2041 itdlqkdyys vetlhsivpq edivsssyii pesheivvld stvtstseek qlldaeaaye
     2101 elmkrqrmql tpgssptqpt sdfiptsdtk vssvgetvds tsltssttsa isdvspvsst
     2161 alsipdvkit qhftaeeied eyltdyarei qeiishetsm ltysettega asvlpsdtas
     2221 ltsstssvct tdssspidsa ttgyvdtvdg vnkladsegv rtitqvplts tkeysemrmp
     2281 yesiaeatrk psiashiesv dqaavslpet apsvvtttvi kpkqyatdat tfdtpkaeke
     2341 aarkmkstve agivkvhhed shkevdgdit risltsvtse qppvciapvp vtepasetss
     2401 vptpsvlskt smvsvpssap avtskvfslf rsssldstaq pspplppppp pppppplppp
     2461 ilpkpaiypk krsqiktpta aaptavpsvt svptleptav lkthvvpltk tytptpppvp
     2521 pkpssipagl vfshrpaevt kppiapkpav pplpiavykp aetqskpigl sltsgmtlnl
     2581 vsapeykias ptsplsphsn kssprltkps qetyvvitlp sepgtpteai tsqavtswpl
     2641 eaptkeqipq svqpiftpsm ktteiqsmah qsmyisgasq tipvttqstf ekipssksgv
     2701 vttevtkttv svvkgpvpgf slgsvaitip peplhiveqp ryrengrfhp lgdvidlrtl
     2761 tkvdierkds cmdlsavsid mrrqmpaset cgrpvstvqp aiinlsttcv adsslsvvtd
     2821 tvtvmtctat vsytastdsl vdlghamttp lqlttskhfe payrvtgsqa fsastdevpi
     2881 nlslgtstha vtwattkpvt vppvgvtngw tdlsteptet gavdlsttks hrtvvtmdet
     2941 tsgiittvie ddekpvdlta grravccdmv yklpfgrsct aqqppttlpe drfgyrddhy
     3001 qydrsgsygy rgmggmkpsm sdtnlseagl fayksknsfd yrvgatdaav dltsgrvttg
     3061 evmdyssktt gpypetrqvi sgiglstpqy sqarmvsslg sqfgvgnvlr ssngvvyssv
     3121 atpipstfpi ttqpgsifst svrdlptlqt vdsvsslsal qqnqplprsy sflttvaaek
     3181 dsaitaidme tglppltiet itseppnlip tlttasevyt dviedevall iapeegkqqq
     3241 ldlerellel ekikqqrfae elewerqeiq rfreqekfmv qkkleelqsm khhllfqqee
     3301 erqaqfmmrq etlaqqqlql eqfqqlqqql hqqleeqkir qiyqygydas gtgspqattd
     3361 qtllegqyat tengqfwptd dvtttasgvl gieipqsqaw ytvqsdgitq yiprsgilss
     3421 vsemslkdid vreekqlkkr ssmpklrgpy eeleetleee prcfkkivds gvqtddedga
     3481 drgytnrrrr tkksvdtsvq tddedqdewd lssrsrrkpr vgkysettte adkakqfskv
     3541 ssiavqtvae isvqtepvgt irtpsirarl dakveiikhi sapektykge slgcqtetes
     3601 dnqspqylsa sspqkdkkrp tpleigyssh lhpdstlqvv psppkspkvl yspispvsps
     3661 kviesafvpy ekpitddisp qkmlhadiak vppsspkaak mmqrsmsdpk plsptaedss
     3721 raqfqytegf mtkgsssitp sgtqkkvkrt lpnpppeeat agtqspyssv gsvsrrricr
     3781 tttmarakil qdidreldlv eresaklrkk qaeldeeeke idaklrylem ginrrkeall
     3841 kerekreray lqgvaeerdy msdsevnntr strietqhgl erphtapqte fnqfmppqtq
     3901 petqfapats pyaqyqyssp alptqaptqf tqqshyqqqq plyhqqvspy qtqtafqtga
     3961 tvsftpqaqp pssqqpsyql psqmmviqpk prqtslylep kittnydvir nqplmitpvs
     4021 tdnnyavsql gskystldlr igldernsia sspissisad sfyadidhhh tprnyvlidd
     4081 igeltkgtga lassfslhek dltktdrllr ttearrsqev sdflaplqts srlhsyakad
     4141 edpmedpyel kllkhqikqe frrgaesldh laglsqyyhm egsyrhfpks ekysigrltl
     4201 ekqaakqlpa allyqkqskh kkalidpklt kfspiqesrd lepdyssymt sststlggit
     4261 trarllqddi tfglrknitd qqkymgpslt ssigaglgta lgptmrstlq desdksyssg
     4321 srsrpssrps svygldlslk rdssssslrl kaqeaepldv sfshaapsgr tkptslpisq
     4381 srgripivaq nseeesplsp vgqpmgmara aagplppisa dtrdqfgssh slpevqqhmr
     4441 eesrtrgydr diafimddfq hamsdseayh lrreetdwfd kpresrleng hgldrrlpek
     4501 lshsrppsqh qdqvscqing kplqyifpht rlkllrdpkd htvsgnglgi rvvggkeipg
     4561 ssgeigayia kilpggnaeq tgkliegmqv lewngipltg ktyeevqsii iqlsgeaeic
     4621 vrldlnmlsd senpqhlelh epvravdkak spgvdpkqla aelqkvslqq splvgssgve
     4681 kgshvhsgtt saassavpsp gqpgspsvsk krhsskptet tksashpvtg eiqlqinydk
     4741 hlgnliihil qarnlaprdn ngysdpfvkv yllpgrgqvm vvqnasaeyk rrtkyiqksl
     4801 npewnqtviy knismeqlkk ktlevtvwdy drfssndflg evlvelssis qldntprwyp
     4861 lkeqsenidh gkshsgqssq qspkpsviks rshgifpdps kdmqvptiek shsspgssks
     4921 sseghlrshg psrsqsktsv tqthledaga aiaaaeaavq qlrlqptahk sgqsnharkq
     4981 hrhsiagvlp iqrtqsdnlp ppandnkdqs qlalrkvmsd gpvkpegars tnhrpaessv
     5041 stgssassfg sgysmdsegs ssatgennlf piprigkmsq ngqepvkqsg vgltdaegkt
     5101 qvmgeikial kkemktdgeq liveilqcrn itykfkspdh lpdlyvklyv vnistqkrvi
     5161 kkktrvcrhd repsfnetfr fslspaghsl qillvsnggk fmkktligea yiwldkvdlr
     5221 krivnwhkll vsstqth
//
LOCUS       XP_053912410            2066 aa            linear   VRT 09-MAR-2023
DEFINITION  dedicator of cytokinesis protein 4 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912410
VERSION     XP_053912410.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056435.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2066
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2066
                     /product="dedicator of cytokinesis protein 4 isoform X1"
                     /calculated_mol_wt=235555
     Region          52..107
                     /region_name="SH3_DOCK4_B"
                     /note="Src Homology 3 domain of Class B Dedicator of
                     Cytokinesis 4; cd12049"
                     /db_xref="CDD:212982"
     Site            order(54..58,65,70..72,74,78..79,83..84,86,94,96,98,100,
                     102..103,105,107)
                     /site_type="other"
                     /note="ELMO interaction site [polypeptide binding]"
                     /db_xref="CDD:212982"
     Site            order(57,59,62,66,83..84,100,102..103)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212982"
     Region          115..434
                     /region_name="DOCK_N"
                     /note="DOCK N-terminus; pfam16172"
                     /db_xref="CDD:465040"
     Region          442..626
                     /region_name="C2_Dock-B"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class B proteins; cd08695"
                     /db_xref="CDD:176077"
     Region          1248..1638
                     /region_name="DHR2_DOCK4"
                     /note="Dock Homology Region 2, a GEF domain, of Class B
                     Dedicator of Cytokinesis 4; cd11705"
                     /db_xref="CDD:212578"
     Site            order(1328,1338,1340..1341,1343..1344,1347..1348,
                     1350..1351,1354..1355)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:212578"
     Site            order(1366,1368,1392,1395..1398,1400..1401,1414..1416,
                     1433..1435,1469..1472,1483..1484,1487,1489,1526..1527,
                     1530,1550..1551,1553..1554,1557..1559,1562..1564,
                     1567..1568,1571,1601,1623,1626)
                     /site_type="other"
                     /note="putative Rac/Cdc42 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:212578"
     Site            1562..1567
                     /site_type="other"
                     /note="nucleotide sensor"
                     /db_xref="CDD:212578"
     Region          <1769..2066
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..2066
                     /gene="DOCK4"
                     /coded_by="XM_054056435.1:9..6209"
                     /db_xref="GeneID:104062417"
ORIGIN      
        1 mavapplrpv gprgaggaep rrgaalpaep wlgaaersra vrmwiptehe kygvviagfr
       61 gtvphglsle igdtvqilek cdgwyrgfal knpnvkgifp snyihlknac vknkgqfemv
      121 iptedsvite mtstlrdwgt mwkqlyvrne gdlfhrlwhi mneildlrrq vlvghlthdr
      181 mkdvkrhita rldwgneqlg ldlvprkeya mvdpeeisvt elyrlmehrh rkkdtpvpas
      241 shhlfvqmks lmcsnlgeel evifslfdsk enrpiserff lrlnrnglpk cpekperhcs
      301 lfvdlgssel rkdiyitvhi irigrmgage kknacnvqyr rpfgcavlsi adllagdskd
      361 dlvlkvymcn tesdwyqihe niikklnary nltgsnagla vslqllhgdi eqirreytsm
      421 fthgvsitrk lgfsniimpg emrndlyiti ergefekggk svarnvevtm hvvdssgqil
      481 kdfisfgsge ppaseyhsfv lyhnngprwa ellklpipvd kfrgahirce frhcstkekg
      541 ekklfgfsfm plmqengrtl pdgthelivh kceentnlqd ssrylklpfs kgiflgnnsq
      601 avkttkesfw itsflcstkl tqngdmldll kwrthpekia gclsklkeid gseivkflqd
      661 tldtlfgild ensqkygskv fdclvhiinl lqdskfhhfk pvmdtyiesh fagalvyrdl
      721 ikvlkwhidr vtevelhehi qevlkaqeyi fkyivqsrrl fsiatggqne eefrcciqel
      781 lmsvrfflsq eskgasalsq lqavflssfp svysellklf dvrevanlvh dalgslpsvm
      841 hgdeslqavk lqsigktves hlytnpdsry illpvvlhhl hmhlqeqkdl imcarilsni
      901 fclikknsse ksvleeidvi vnslldillr tileitsrpq psgsalrlqf qdvtgefvsc
      961 llsllrqmtd rhyqqlldsf stkddlrdfl lqiftvfril irpemfpkdw tvmrlvannv
     1021 iittvlylsd alrknflnen fdykiwdsyf flavifinql clqlemftps kkkkvlekyg
     1081 dmrvtmgcei fsmwqnlgeh klhfipalig pflevtlipq pdlrnvmipi fhdmmdweqr
     1141 rsgnfkqvea klidkldslm segkgdetyr elfnsiiplf gpypsllkki eretwresgv
     1201 sliatvtrlm erlldyrdcm kmgevdgkki gctvsllnfy ktelnkeemy iryihklydl
     1261 hlkaqnftea aytlllydel lewsdrplre flnypmqtew qrkeclhlti iqnfdrgkcw
     1321 engiilcrki aeqyesyydy rnlskmrmme aslydkimdq qrlepeffrv gfygkkfpff
     1381 lrnkefvcrg hdyerleafq qrmlnefpha iamqhanqpd etifqaeaqy lqiyavtpip
     1441 enqevlqrdg ipdniksfyk vnhiwrfryd rpfhkgtkdk enefkslwve rttlilvqsl
     1501 pgisrwfeve krevvemspl enaievlenk nqqlrtlisq cqtrqmqnin pltmclngvi
     1561 daavnggvar yqeaffvkey ilnhpedgek itrlrelmle qaqilefgla vhekvvpqdm
     1621 rplhkklvdq ffvmksslgi qefsacvqas pihfpngspr vcrnsipvsv spdgarvipr
     1681 rsplsypavn rysssslssq asaevsnitg qsessdevfn mqpspstssl ssthsaspnv
     1741 tssapssara spllsdkhkh srensclspr drpcsaiypt psetsqtans cfakwnatsi
     1801 phstrdsire aeelvvpvst lsetrpagks pnlslpsvsq errmlfnhig dgalprsdsn
     1861 lpgpdkavnt tpsswsldsg kearnssesg klisppvppr paqtasparh iasvspspag
     1921 rspmkgsvqs ftpspveyhs sglisnspvl sgsyssgiss lsrcstsets gfesqgsest
     1981 asvptfsise epvrkesktp ppysvyertl krpvplphsl sippatdppa lppkpqlvrp
     2041 nnlenssrrt eqvprprplp rkvsql
//
LOCUS       XP_053912411            2057 aa            linear   VRT 09-MAR-2023
DEFINITION  dedicator of cytokinesis protein 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912411
VERSION     XP_053912411.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056436.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2057
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2057
                     /product="dedicator of cytokinesis protein 4 isoform X2"
                     /calculated_mol_wt=234583
     Region          52..107
                     /region_name="SH3_DOCK4_B"
                     /note="Src Homology 3 domain of Class B Dedicator of
                     Cytokinesis 4; cd12049"
                     /db_xref="CDD:212982"
     Site            order(54..58,65,70..72,74,78..79,83..84,86,94,96,98,100,
                     102..103,105,107)
                     /site_type="other"
                     /note="ELMO interaction site [polypeptide binding]"
                     /db_xref="CDD:212982"
     Site            order(57,59,62,66,83..84,100,102..103)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212982"
     Region          115..434
                     /region_name="DOCK_N"
                     /note="DOCK N-terminus; pfam16172"
                     /db_xref="CDD:465040"
     Region          442..626
                     /region_name="C2_Dock-B"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class B proteins; cd08695"
                     /db_xref="CDD:176077"
     Region          1239..1629
                     /region_name="DHR2_DOCK4"
                     /note="Dock Homology Region 2, a GEF domain, of Class B
                     Dedicator of Cytokinesis 4; cd11705"
                     /db_xref="CDD:212578"
     Site            order(1319,1329,1331..1332,1334..1335,1338..1339,
                     1341..1342,1345..1346)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:212578"
     Site            order(1357,1359,1383,1386..1389,1391..1392,1405..1407,
                     1424..1426,1460..1463,1474..1475,1478,1480,1517..1518,
                     1521,1541..1542,1544..1545,1548..1550,1553..1555,
                     1558..1559,1562,1592,1614,1617)
                     /site_type="other"
                     /note="putative Rac/Cdc42 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:212578"
     Site            1553..1558
                     /site_type="other"
                     /note="nucleotide sensor"
                     /db_xref="CDD:212578"
     Region          <1760..2057
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..2057
                     /gene="DOCK4"
                     /coded_by="XM_054056436.1:9..6182"
                     /db_xref="GeneID:104062417"
ORIGIN      
        1 mavapplrpv gprgaggaep rrgaalpaep wlgaaersra vrmwiptehe kygvviagfr
       61 gtvphglsle igdtvqilek cdgwyrgfal knpnvkgifp snyihlknac vknkgqfemv
      121 iptedsvite mtstlrdwgt mwkqlyvrne gdlfhrlwhi mneildlrrq vlvghlthdr
      181 mkdvkrhita rldwgneqlg ldlvprkeya mvdpeeisvt elyrlmehrh rkkdtpvpas
      241 shhlfvqmks lmcsnlgeel evifslfdsk enrpiserff lrlnrnglpk cpekperhcs
      301 lfvdlgssel rkdiyitvhi irigrmgage kknacnvqyr rpfgcavlsi adllagdskd
      361 dlvlkvymcn tesdwyqihe niikklnary nltgsnagla vslqllhgdi eqirreytsm
      421 fthgvsitrk lgfsniimpg emrndlyiti ergefekggk svarnvevtm hvvdssgqil
      481 kdfisfgsge ppaseyhsfv lyhnngprwa ellklpipvd kfrgahirce frhcstkekg
      541 ekklfgfsfm plmqengrtl pdgthelivh kceentnlqd ssrylklpfs kgiflgnnsq
      601 avkttkesfw itsflcstkl tqngdmldll kwrthpekia gclsklkeid gseivkflqd
      661 tldtlfgild ensqkygskv fdclvhiinl lqdskfhhfk pvmdtyiesh fagalvyrdl
      721 ikvlkwhidr vtevelhehi qevlkaqeyi fkyivqsrrl fsiatggqne eefrcciqel
      781 lmsvrfflsq eskgasalsq lqavflssfp svysellklf dvrevanlvh dalgslpsvm
      841 hgdeslqavk lqsigktves hlytnpdsry illpvvlhhl hmhlqeqkdl imcarilsni
      901 fclikknsse ksvleeidvi vnslldillr tileitsrpq psgsalrlqf qdvtgefvsc
      961 llsllrqmtd rhyqqlldsf stkddlrdfl lqiftvfril irpemfpkdw tvmrlvannv
     1021 iittvlylsd alrknflnen fdykiwdsyf flavifinql clqlemftps kkkkvlekyg
     1081 dmrvtmgcei fsmwqnlgeh klhfipalig pflevtlipq pdlrnvmipi fhdmmdweqr
     1141 rsgnfkqvea klidkldslm segkgdetyr elfnsillkk ieretwresg vsliatvtrl
     1201 merlldyrdc mkmgevdgkk igctvsllnf yktelnkeem yiryihklyd lhlkaqnfte
     1261 aaytlllyde llewsdrplr eflnypmqte wqrkeclhlt iiqnfdrgkc wengiilcrk
     1321 iaeqyesyyd yrnlskmrmm easlydkimd qqrlepeffr vgfygkkfpf flrnkefvcr
     1381 ghdyerleaf qqrmlnefph aiamqhanqp detifqaeaq ylqiyavtpi penqevlqrd
     1441 gipdniksfy kvnhiwrfry drpfhkgtkd kenefkslwv erttlilvqs lpgisrwfev
     1501 ekrevvemsp lenaievlen knqqlrtlis qcqtrqmqni npltmclngv idaavnggva
     1561 ryqeaffvke yilnhpedge kitrlrelml eqaqilefgl avhekvvpqd mrplhkklvd
     1621 qffvmksslg iqefsacvqa spihfpngsp rvcrnsipvs vspdgarvip rrsplsypav
     1681 nrysssslss qasaevsnit gqsessdevf nmqpspstss lssthsaspn vtssapssar
     1741 aspllsdkhk hsrensclsp rdrpcsaiyp tpsetsqtan scfakwnats iphstrdsir
     1801 eaeelvvpvs tlsetrpagk spnlslpsvs qerrmlfnhi gdgalprsds nlpgpdkavn
     1861 ttpsswslds gkearnsses gklisppvpp rpaqtaspar hiasvspspa grspmkgsvq
     1921 sftpspveyh ssglisnspv lsgsyssgis slsrcstset sgfesqgses tasvptfsis
     1981 eepvrkeskt pppysvyert lkrpvplphs lsippatdpp alppkpqlvr pnnlenssrr
     2041 teqvprprpl prkvsql
//
LOCUS       XP_053912412            2010 aa            linear   VRT 09-MAR-2023
DEFINITION  dedicator of cytokinesis protein 4 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912412
VERSION     XP_053912412.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056437.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2010
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2010
                     /product="dedicator of cytokinesis protein 4 isoform X3"
                     /calculated_mol_wt=229520
     Region          52..107
                     /region_name="SH3_DOCK4_B"
                     /note="Src Homology 3 domain of Class B Dedicator of
                     Cytokinesis 4; cd12049"
                     /db_xref="CDD:212982"
     Site            order(54..58,65,70..72,74,78..79,83..84,86,94,96,98,100,
                     102..103,105,107)
                     /site_type="other"
                     /note="ELMO interaction site [polypeptide binding]"
                     /db_xref="CDD:212982"
     Site            order(57,59,62,66,83..84,100,102..103)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212982"
     Region          115..434
                     /region_name="DOCK_N"
                     /note="DOCK N-terminus; pfam16172"
                     /db_xref="CDD:465040"
     Region          442..626
                     /region_name="C2_Dock-B"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class B proteins; cd08695"
                     /db_xref="CDD:176077"
     Region          1248..1638
                     /region_name="DHR2_DOCK4"
                     /note="Dock Homology Region 2, a GEF domain, of Class B
                     Dedicator of Cytokinesis 4; cd11705"
                     /db_xref="CDD:212578"
     Site            order(1328,1338,1340..1341,1343..1344,1347..1348,
                     1350..1351,1354..1355)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:212578"
     Site            order(1366,1368,1392,1395..1398,1400..1401,1414..1416,
                     1433..1435,1469..1472,1483..1484,1487,1489,1526..1527,
                     1530,1550..1551,1553..1554,1557..1559,1562..1564,
                     1567..1568,1571,1601,1623,1626)
                     /site_type="other"
                     /note="putative Rac/Cdc42 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:212578"
     Site            1562..1567
                     /site_type="other"
                     /note="nucleotide sensor"
                     /db_xref="CDD:212578"
     Region          <1769..2010
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..2010
                     /gene="DOCK4"
                     /coded_by="XM_054056437.1:9..6041"
                     /db_xref="GeneID:104062417"
ORIGIN      
        1 mavapplrpv gprgaggaep rrgaalpaep wlgaaersra vrmwiptehe kygvviagfr
       61 gtvphglsle igdtvqilek cdgwyrgfal knpnvkgifp snyihlknac vknkgqfemv
      121 iptedsvite mtstlrdwgt mwkqlyvrne gdlfhrlwhi mneildlrrq vlvghlthdr
      181 mkdvkrhita rldwgneqlg ldlvprkeya mvdpeeisvt elyrlmehrh rkkdtpvpas
      241 shhlfvqmks lmcsnlgeel evifslfdsk enrpiserff lrlnrnglpk cpekperhcs
      301 lfvdlgssel rkdiyitvhi irigrmgage kknacnvqyr rpfgcavlsi adllagdskd
      361 dlvlkvymcn tesdwyqihe niikklnary nltgsnagla vslqllhgdi eqirreytsm
      421 fthgvsitrk lgfsniimpg emrndlyiti ergefekggk svarnvevtm hvvdssgqil
      481 kdfisfgsge ppaseyhsfv lyhnngprwa ellklpipvd kfrgahirce frhcstkekg
      541 ekklfgfsfm plmqengrtl pdgthelivh kceentnlqd ssrylklpfs kgiflgnnsq
      601 avkttkesfw itsflcstkl tqngdmldll kwrthpekia gclsklkeid gseivkflqd
      661 tldtlfgild ensqkygskv fdclvhiinl lqdskfhhfk pvmdtyiesh fagalvyrdl
      721 ikvlkwhidr vtevelhehi qevlkaqeyi fkyivqsrrl fsiatggqne eefrcciqel
      781 lmsvrfflsq eskgasalsq lqavflssfp svysellklf dvrevanlvh dalgslpsvm
      841 hgdeslqavk lqsigktves hlytnpdsry illpvvlhhl hmhlqeqkdl imcarilsni
      901 fclikknsse ksvleeidvi vnslldillr tileitsrpq psgsalrlqf qdvtgefvsc
      961 llsllrqmtd rhyqqlldsf stkddlrdfl lqiftvfril irpemfpkdw tvmrlvannv
     1021 iittvlylsd alrknflnen fdykiwdsyf flavifinql clqlemftps kkkkvlekyg
     1081 dmrvtmgcei fsmwqnlgeh klhfipalig pflevtlipq pdlrnvmipi fhdmmdweqr
     1141 rsgnfkqvea klidkldslm segkgdetyr elfnsiiplf gpypsllkki eretwresgv
     1201 sliatvtrlm erlldyrdcm kmgevdgkki gctvsllnfy ktelnkeemy iryihklydl
     1261 hlkaqnftea aytlllydel lewsdrplre flnypmqtew qrkeclhlti iqnfdrgkcw
     1321 engiilcrki aeqyesyydy rnlskmrmme aslydkimdq qrlepeffrv gfygkkfpff
     1381 lrnkefvcrg hdyerleafq qrmlnefpha iamqhanqpd etifqaeaqy lqiyavtpip
     1441 enqevlqrdg ipdniksfyk vnhiwrfryd rpfhkgtkdk enefkslwve rttlilvqsl
     1501 pgisrwfeve krevvemspl enaievlenk nqqlrtlisq cqtrqmqnin pltmclngvi
     1561 daavnggvar yqeaffvkey ilnhpedgek itrlrelmle qaqilefgla vhekvvpqdm
     1621 rplhkklvdq ffvmksslgi qefsacvqas pihfpngspr vcrnsipvsv spdgarvipr
     1681 rsplsypavn rysssslssq asaevsnitg qsessdevfn mqpspstssl ssthsaspnv
     1741 tssapssara spllsdkhkh srensclspr drpcsaiypt psetsqrmlf nhigdgalpr
     1801 sdsnlpgpdk avnttpssws ldsgkearns sesgklispp vpprpaqtas parhiasvsp
     1861 spagrspmkg svqsftpspv eyhssglisn spvlsgsyss gisslsrcst setsgfesqg
     1921 sestasvptf siseepvrke sktpppysvy ertlkrpvpl phslsippat dppalppkpq
     1981 lvrpnnlens srrteqvprp rplprkvsql
//
LOCUS       XP_053912413            2001 aa            linear   VRT 09-MAR-2023
DEFINITION  dedicator of cytokinesis protein 4 isoform X4 [Cuculus canorus].
ACCESSION   XP_053912413
VERSION     XP_053912413.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056438.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2001
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2001
                     /product="dedicator of cytokinesis protein 4 isoform X4"
                     /calculated_mol_wt=228547
     Region          52..107
                     /region_name="SH3_DOCK4_B"
                     /note="Src Homology 3 domain of Class B Dedicator of
                     Cytokinesis 4; cd12049"
                     /db_xref="CDD:212982"
     Site            order(54..58,65,70..72,74,78..79,83..84,86,94,96,98,100,
                     102..103,105,107)
                     /site_type="other"
                     /note="ELMO interaction site [polypeptide binding]"
                     /db_xref="CDD:212982"
     Site            order(57,59,62,66,83..84,100,102..103)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212982"
     Region          115..434
                     /region_name="DOCK_N"
                     /note="DOCK N-terminus; pfam16172"
                     /db_xref="CDD:465040"
     Region          442..626
                     /region_name="C2_Dock-B"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class B proteins; cd08695"
                     /db_xref="CDD:176077"
     Region          1239..1629
                     /region_name="DHR2_DOCK4"
                     /note="Dock Homology Region 2, a GEF domain, of Class B
                     Dedicator of Cytokinesis 4; cd11705"
                     /db_xref="CDD:212578"
     Site            order(1319,1329,1331..1332,1334..1335,1338..1339,
                     1341..1342,1345..1346)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:212578"
     Site            order(1357,1359,1383,1386..1389,1391..1392,1405..1407,
                     1424..1426,1460..1463,1474..1475,1478,1480,1517..1518,
                     1521,1541..1542,1544..1545,1548..1550,1553..1555,
                     1558..1559,1562,1592,1614,1617)
                     /site_type="other"
                     /note="putative Rac/Cdc42 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:212578"
     Site            1553..1558
                     /site_type="other"
                     /note="nucleotide sensor"
                     /db_xref="CDD:212578"
     Region          <1760..2001
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..2001
                     /gene="DOCK4"
                     /coded_by="XM_054056438.1:9..6014"
                     /db_xref="GeneID:104062417"
ORIGIN      
        1 mavapplrpv gprgaggaep rrgaalpaep wlgaaersra vrmwiptehe kygvviagfr
       61 gtvphglsle igdtvqilek cdgwyrgfal knpnvkgifp snyihlknac vknkgqfemv
      121 iptedsvite mtstlrdwgt mwkqlyvrne gdlfhrlwhi mneildlrrq vlvghlthdr
      181 mkdvkrhita rldwgneqlg ldlvprkeya mvdpeeisvt elyrlmehrh rkkdtpvpas
      241 shhlfvqmks lmcsnlgeel evifslfdsk enrpiserff lrlnrnglpk cpekperhcs
      301 lfvdlgssel rkdiyitvhi irigrmgage kknacnvqyr rpfgcavlsi adllagdskd
      361 dlvlkvymcn tesdwyqihe niikklnary nltgsnagla vslqllhgdi eqirreytsm
      421 fthgvsitrk lgfsniimpg emrndlyiti ergefekggk svarnvevtm hvvdssgqil
      481 kdfisfgsge ppaseyhsfv lyhnngprwa ellklpipvd kfrgahirce frhcstkekg
      541 ekklfgfsfm plmqengrtl pdgthelivh kceentnlqd ssrylklpfs kgiflgnnsq
      601 avkttkesfw itsflcstkl tqngdmldll kwrthpekia gclsklkeid gseivkflqd
      661 tldtlfgild ensqkygskv fdclvhiinl lqdskfhhfk pvmdtyiesh fagalvyrdl
      721 ikvlkwhidr vtevelhehi qevlkaqeyi fkyivqsrrl fsiatggqne eefrcciqel
      781 lmsvrfflsq eskgasalsq lqavflssfp svysellklf dvrevanlvh dalgslpsvm
      841 hgdeslqavk lqsigktves hlytnpdsry illpvvlhhl hmhlqeqkdl imcarilsni
      901 fclikknsse ksvleeidvi vnslldillr tileitsrpq psgsalrlqf qdvtgefvsc
      961 llsllrqmtd rhyqqlldsf stkddlrdfl lqiftvfril irpemfpkdw tvmrlvannv
     1021 iittvlylsd alrknflnen fdykiwdsyf flavifinql clqlemftps kkkkvlekyg
     1081 dmrvtmgcei fsmwqnlgeh klhfipalig pflevtlipq pdlrnvmipi fhdmmdweqr
     1141 rsgnfkqvea klidkldslm segkgdetyr elfnsillkk ieretwresg vsliatvtrl
     1201 merlldyrdc mkmgevdgkk igctvsllnf yktelnkeem yiryihklyd lhlkaqnfte
     1261 aaytlllyde llewsdrplr eflnypmqte wqrkeclhlt iiqnfdrgkc wengiilcrk
     1321 iaeqyesyyd yrnlskmrmm easlydkimd qqrlepeffr vgfygkkfpf flrnkefvcr
     1381 ghdyerleaf qqrmlnefph aiamqhanqp detifqaeaq ylqiyavtpi penqevlqrd
     1441 gipdniksfy kvnhiwrfry drpfhkgtkd kenefkslwv erttlilvqs lpgisrwfev
     1501 ekrevvemsp lenaievlen knqqlrtlis qcqtrqmqni npltmclngv idaavnggva
     1561 ryqeaffvke yilnhpedge kitrlrelml eqaqilefgl avhekvvpqd mrplhkklvd
     1621 qffvmksslg iqefsacvqa spihfpngsp rvcrnsipvs vspdgarvip rrsplsypav
     1681 nrysssslss qasaevsnit gqsessdevf nmqpspstss lssthsaspn vtssapssar
     1741 aspllsdkhk hsrensclsp rdrpcsaiyp tpsetsqrml fnhigdgalp rsdsnlpgpd
     1801 kavnttpssw sldsgkearn ssesgklisp pvpprpaqta sparhiasvs pspagrspmk
     1861 gsvqsftpsp veyhssglis nspvlsgsys sgisslsrcs tsetsgfesq gsestasvpt
     1921 fsiseepvrk esktpppysv yertlkrpvp lphslsippa tdppalppkp qlvrpnnlen
     1981 ssrrteqvpr prplprkvsq l
//
LOCUS       XP_053912414             424 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 277 [Cuculus canorus].
ACCESSION   XP_053912414
VERSION     XP_053912414.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056439.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..424
                     /product="zinc finger protein 277"
                     /calculated_mol_wt=49993
     Region          149..237
                     /region_name="zf-C2H2_2"
                     /note="C2H2 type zinc-finger (2 copies); pfam12756"
                     /db_xref="CDD:463690"
     Region          149..171
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275371"
     Site            order(156..157,159,161..162,166,170,205,208..212,214..215)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275371"
     Region          200..222
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275371"
     Region          278..375
                     /region_name="zf-C2H2_2"
                     /note="C2H2 type zinc-finger (2 copies); pfam12756"
                     /db_xref="CDD:463690"
     CDS             1..424
                     /gene="ZNF277"
                     /coded_by="XM_054056439.1:116..1390"
                     /db_xref="GeneID:104064336"
ORIGIN      
        1 maargdteci leplslpesp gdvaavessp yvpcifckec ylsaeqnqll khmiiehklv
       61 iadvklvadf rryvlywkkr faeqpitdfc svirtnseap leeqdnyfll cdvlpedril
      121 reqlqqnrlr eileqqqrer ydtsfhsicm fcdqeftgnr svllnhmare hafniglpdn
      181 ivncneflsv lqkkldnlqc lycekifrdk ntlkdhmrkk qhrrinaknk eydkfyminy
      241 lefgksweev qseddrelld nleedwsgwe ehpvsavclf ceqqadttek lylhmqkshg
      301 fdfpkikseh glnfyqqvkl vnfirreihh crcyncqekf qskgglishm eetkhitflp
      361 arstwdqpqy yfptyendtl lctlsdsedl itedqsedvp vvsedisnlk alkqssvlnq
      421 llye
//
LOCUS       XP_053912415             510 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase Nek3-like isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912415
VERSION     XP_053912415.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056440.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..510
                     /product="serine/threonine-protein kinase Nek3-like
                     isoform X1"
                     /calculated_mol_wt=57961
     Region          3..257
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(10..13,16,18,31,33,63,79..82,127,131..132,134,
                     144..145)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270870"
     CDS             1..510
                     /gene="LOC104066173"
                     /coded_by="XM_054056440.1:329..1861"
                     /db_xref="GeneID:104066173"
ORIGIN      
        1 meeykvlkvl gegsfgrall vhhtisdqhy amkeirlpms ssdvensrke avllakmkhp
       61 nivafkesfe anghlyivme ycdggdlmqk ikqqrgklfp edmilywfvq mclgvkhihd
      121 krvlhrdiks knvfltqdgk iklgdfgsar llahpalyac tylgtpyyvp peiwentayn
      181 nksdiwslgc ilyelctlrh pfqanswkhl ilkickgsys plpshysyel hylikqmfkr
      241 npqsrpsant iltrgcltkl iknclpseps kdesskhspl erknisedls estkeqrksd
      301 eeaetsevaq gitdsshphr rqwekkisst vvevlenasl lssgvtseed ksgcvinyse
      361 nkprkqwnke tpqtlmnils nadvnlafkt ytiykpaqel nkvvtktqql qscavstlps
      421 glvralgrrk ewavsptapg nivrgplsse teesdevdge heaivtdser leprsddddt
      481 dfeeddpdwi selkmileng dreleftcnn
//
LOCUS       XP_053912416             469 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase Nek3-like isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912416
VERSION     XP_053912416.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056441.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..469
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..469
                     /product="serine/threonine-protein kinase Nek3-like
                     isoform X2"
                     /calculated_mol_wt=53527
     Region          3..257
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(10..13,16,18,31,33,63,79..82,127,131..132,134,
                     144..145)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270870"
     CDS             1..469
                     /gene="LOC104066173"
                     /coded_by="XM_054056441.1:323..1732"
                     /db_xref="GeneID:104066173"
ORIGIN      
        1 meeykvlkvl gegsfgrall vhhtisdqhy amkeirlpms ssdvensrke avllakmkhp
       61 nivafkesfe anghlyivme ycdggdlmqk ikqqrgklfp edmilywfvq mclgvkhihd
      121 krvlhrdiks knvfltqdgk iklgdfgsar llahpalyac tylgtpyyvp peiwentayn
      181 nksdiwslgc ilyelctlrh pfqanswkhl ilkickgsys plpshysyel hylikqmfkr
      241 npqsrpsant iltrgcltkl iknclpseps kdesskhspl erknisedls estkeqrksd
      301 eeaetsevaq gitdsshphr rqwekkisst vvevlenasl lssgvtseed ksgcvinyse
      361 nkprkqwnke tpqtlmnils nadvnlafkt ytiykpapgn ivrgplsset eesdevdgeh
      421 eaivtdserl eprsddddtd feeddpdwis elkmilengd releftcnn
//
LOCUS       XP_009554721             153 aa            linear   VRT 09-MAR-2023
DEFINITION  histone deacetylase complex subunit SAP18 [Cuculus canorus].
ACCESSION   XP_009554721
VERSION     XP_009554721.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556426.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..153
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..153
                     /product="histone deacetylase complex subunit SAP18"
                     /calculated_mol_wt=17474
     Region          19..137
                     /region_name="SAP18"
                     /note="Sin3 associated polypeptide p18 (SAP18); pfam06487"
                     /db_xref="CDD:461934"
     CDS             1..153
                     /gene="SAP18"
                     /coded_by="XM_009556426.2:87..548"
                     /db_xref="GeneID:104055316"
ORIGIN      
        1 mavesrvtqe eikkepekpi drektcplll rvfttnngrh hrmdefsrgn vpsselqiyt
       61 wmdatlkelt slvkevypea rkkgthfnfa ivftdlkrpg yrvkeigstm sgrkgtddsm
      121 tlqsqkfqig dyldiaitpp nrapppssrm rpy
//
LOCUS       XP_009555447             147 aa            linear   VRT 09-MAR-2023
DEFINITION  hemoglobin subunit epsilon [Cuculus canorus].
ACCESSION   XP_009555447
VERSION     XP_009555447.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557152.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..147
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..147
                     /product="hemoglobin subunit epsilon"
                     /calculated_mol_wt=16439
     Region          8..146
                     /region_name="Hb-beta-like"
                     /note="Hemoglobin beta, gamma, delta, epsilon, and related
                     Hb subunits; cd08925"
                     /db_xref="CDD:381262"
     Site            order(31,34..35,38,41,98,100,103,109,112..113,116..117,
                     120,123..125,128..129,132)
                     /site_type="other"
                     /note="tetramer interface [polypeptide binding]"
                     /db_xref="CDD:381262"
     Site            order(32,42..43,64,67..68,71,89,93,97,99,103..104,107,142)
                     /site_type="other"
                     /note="heme binding site [chemical binding]"
                     /db_xref="CDD:381262"
     CDS             1..147
                     /gene="LOC104055955"
                     /coded_by="XM_009557152.2:90..533"
                     /db_xref="GeneID:104055955"
ORIGIN      
        1 mvhwtaeekq liasvwskvn veecgaeala rllivypwtq rffssfgnls sptailgnpk
       61 vrahgrkvlt sfgeavknld nikatfskls elhceklhvd penfrllgdi liivlashfa
      121 rdftpacqfa wqklvnvvah alarkyh
//
LOCUS       XP_053912417             147 aa            linear   VRT 09-MAR-2023
DEFINITION  hemoglobin subunit epsilon [Cuculus canorus].
ACCESSION   XP_053912417
VERSION     XP_053912417.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056442.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..147
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..147
                     /product="hemoglobin subunit epsilon"
                     /calculated_mol_wt=16439
     Region          8..146
                     /region_name="Hb-beta-like"
                     /note="Hemoglobin beta, gamma, delta, epsilon, and related
                     Hb subunits; cd08925"
                     /db_xref="CDD:381262"
     Site            order(31,34..35,38,41,98,100,103,109,112..113,116..117,
                     120,123..125,128..129,132)
                     /site_type="other"
                     /note="tetramer interface [polypeptide binding]"
                     /db_xref="CDD:381262"
     Site            order(32,42..43,64,67..68,71,89,93,97,99,103..104,107,142)
                     /site_type="other"
                     /note="heme binding site [chemical binding]"
                     /db_xref="CDD:381262"
     CDS             1..147
                     /gene="LOC104055955"
                     /coded_by="XM_054056442.1:225..668"
                     /db_xref="GeneID:104055955"
ORIGIN      
        1 mvhwtaeekq liasvwskvn veecgaeala rllivypwtq rffssfgnls sptailgnpk
       61 vrahgrkvlt sfgeavknld nikatfskls elhceklhvd penfrllgdi liivlashfa
      121 rdftpacqfa wqklvnvvah alarkyh
//
LOCUS       XP_053912418             632 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily D member 2 [Cuculus
            canorus].
ACCESSION   XP_053912418
VERSION     XP_053912418.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056443.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..632
                     /product="potassium voltage-gated channel subfamily D
                     member 2"
                     /calculated_mol_wt=70711
     Region          6..144
                     /region_name="BTB_POZ"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; cl38908"
                     /db_xref="CDD:453885"
     Region          184..415
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          472..548
                     /region_name="DUF3399"
                     /note="Domain of unknown function (DUF3399); pfam11879"
                     /db_xref="CDD:463381"
     CDS             1..632
                     /gene="KCND2"
                     /coded_by="XM_054056443.1:237..2135"
                     /db_xref="GeneID:104061625"
ORIGIN      
        1 maagvaawlp faraaaigwm pvatgpmpaa prqerkrsqd slivlnvsgi qfqtwldtle
       61 rypdtllgss erdffyhpet qqyffdrdpd ifrhilnfyr tgklhyprqe cisaydeela
      121 ffgiipeiig dccyeeykdr rrenaerlqd dadtdhaaes slpsmtarqr mwrafenpht
      181 stlalvfyyv tgffiavsvi anvvetvpcg ispghikelp cgeryavaff cldtacvmif
      241 tveyllrlla apsrykfvrs vmsiidvvai mpyyiglvmt dnedvsgafv tlrvfrvfri
      301 fkfsrhsqgl rilgytlksc aselgfllfs ltmaiiifat vmyyaekgss askftsipaa
      361 fwytivtmtt lgygdmvpkt iagkifgsic slsgvlvial pvpvivsnfs riyhqnqrad
      421 krraqkkarl ariraaksgs anaymqskrn gllsnqlqqs sneeeqafgg ksgssfetqh
      481 hhllhclekt tnhefvdeqv yeescmevst vnrppshsps lssqqgvtst ccsrrhkkty
      541 ripnttitgs rpgsvqelst iqircvertp lsnsrsslna kveecvklnc eqpyvttaii
      601 siptppvttp egddrpdspe ysggnivrvs al
//
LOCUS       XP_053912419             632 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily D member 2 [Cuculus
            canorus].
ACCESSION   XP_053912419
VERSION     XP_053912419.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056444.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..632
                     /product="potassium voltage-gated channel subfamily D
                     member 2"
                     /calculated_mol_wt=70711
     Region          6..144
                     /region_name="BTB_POZ"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; cl38908"
                     /db_xref="CDD:453885"
     Region          184..415
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          472..548
                     /region_name="DUF3399"
                     /note="Domain of unknown function (DUF3399); pfam11879"
                     /db_xref="CDD:463381"
     CDS             1..632
                     /gene="KCND2"
                     /coded_by="XM_054056444.1:588..2486"
                     /db_xref="GeneID:104061625"
ORIGIN      
        1 maagvaawlp faraaaigwm pvatgpmpaa prqerkrsqd slivlnvsgi qfqtwldtle
       61 rypdtllgss erdffyhpet qqyffdrdpd ifrhilnfyr tgklhyprqe cisaydeela
      121 ffgiipeiig dccyeeykdr rrenaerlqd dadtdhaaes slpsmtarqr mwrafenpht
      181 stlalvfyyv tgffiavsvi anvvetvpcg ispghikelp cgeryavaff cldtacvmif
      241 tveyllrlla apsrykfvrs vmsiidvvai mpyyiglvmt dnedvsgafv tlrvfrvfri
      301 fkfsrhsqgl rilgytlksc aselgfllfs ltmaiiifat vmyyaekgss askftsipaa
      361 fwytivtmtt lgygdmvpkt iagkifgsic slsgvlvial pvpvivsnfs riyhqnqrad
      421 krraqkkarl ariraaksgs anaymqskrn gllsnqlqqs sneeeqafgg ksgssfetqh
      481 hhllhclekt tnhefvdeqv yeescmevst vnrppshsps lssqqgvtst ccsrrhkkty
      541 ripnttitgs rpgsvqelst iqircvertp lsnsrsslna kveecvklnc eqpyvttaii
      601 siptppvttp egddrpdspe ysggnivrvs al
//
LOCUS       XP_053912420             632 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily D member 2 [Cuculus
            canorus].
ACCESSION   XP_053912420
VERSION     XP_053912420.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056445.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..632
                     /product="potassium voltage-gated channel subfamily D
                     member 2"
                     /calculated_mol_wt=70711
     Region          6..144
                     /region_name="BTB_POZ"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; cl38908"
                     /db_xref="CDD:453885"
     Region          184..415
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          472..548
                     /region_name="DUF3399"
                     /note="Domain of unknown function (DUF3399); pfam11879"
                     /db_xref="CDD:463381"
     CDS             1..632
                     /gene="KCND2"
                     /coded_by="XM_054056445.1:579..2477"
                     /db_xref="GeneID:104061625"
ORIGIN      
        1 maagvaawlp faraaaigwm pvatgpmpaa prqerkrsqd slivlnvsgi qfqtwldtle
       61 rypdtllgss erdffyhpet qqyffdrdpd ifrhilnfyr tgklhyprqe cisaydeela
      121 ffgiipeiig dccyeeykdr rrenaerlqd dadtdhaaes slpsmtarqr mwrafenpht
      181 stlalvfyyv tgffiavsvi anvvetvpcg ispghikelp cgeryavaff cldtacvmif
      241 tveyllrlla apsrykfvrs vmsiidvvai mpyyiglvmt dnedvsgafv tlrvfrvfri
      301 fkfsrhsqgl rilgytlksc aselgfllfs ltmaiiifat vmyyaekgss askftsipaa
      361 fwytivtmtt lgygdmvpkt iagkifgsic slsgvlvial pvpvivsnfs riyhqnqrad
      421 krraqkkarl ariraaksgs anaymqskrn gllsnqlqqs sneeeqafgg ksgssfetqh
      481 hhllhclekt tnhefvdeqv yeescmevst vnrppshsps lssqqgvtst ccsrrhkkty
      541 ripnttitgs rpgsvqelst iqircvertp lsnsrsslna kveecvklnc eqpyvttaii
      601 siptppvttp egddrpdspe ysggnivrvs al
//
LOCUS       XP_053912421             632 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily D member 2 [Cuculus
            canorus].
ACCESSION   XP_053912421
VERSION     XP_053912421.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056446.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..632
                     /product="potassium voltage-gated channel subfamily D
                     member 2"
                     /calculated_mol_wt=70711
     Region          6..144
                     /region_name="BTB_POZ"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; cl38908"
                     /db_xref="CDD:453885"
     Region          184..415
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          472..548
                     /region_name="DUF3399"
                     /note="Domain of unknown function (DUF3399); pfam11879"
                     /db_xref="CDD:463381"
     CDS             1..632
                     /gene="KCND2"
                     /coded_by="XM_054056446.1:459..2357"
                     /db_xref="GeneID:104061625"
ORIGIN      
        1 maagvaawlp faraaaigwm pvatgpmpaa prqerkrsqd slivlnvsgi qfqtwldtle
       61 rypdtllgss erdffyhpet qqyffdrdpd ifrhilnfyr tgklhyprqe cisaydeela
      121 ffgiipeiig dccyeeykdr rrenaerlqd dadtdhaaes slpsmtarqr mwrafenpht
      181 stlalvfyyv tgffiavsvi anvvetvpcg ispghikelp cgeryavaff cldtacvmif
      241 tveyllrlla apsrykfvrs vmsiidvvai mpyyiglvmt dnedvsgafv tlrvfrvfri
      301 fkfsrhsqgl rilgytlksc aselgfllfs ltmaiiifat vmyyaekgss askftsipaa
      361 fwytivtmtt lgygdmvpkt iagkifgsic slsgvlvial pvpvivsnfs riyhqnqrad
      421 krraqkkarl ariraaksgs anaymqskrn gllsnqlqqs sneeeqafgg ksgssfetqh
      481 hhllhclekt tnhefvdeqv yeescmevst vnrppshsps lssqqgvtst ccsrrhkkty
      541 ripnttitgs rpgsvqelst iqircvertp lsnsrsslna kveecvklnc eqpyvttaii
      601 siptppvttp egddrpdspe ysggnivrvs al
//
LOCUS       XP_009561845             469 aa            linear   VRT 09-MAR-2023
DEFINITION  heat shock 70 kDa protein 13 [Cuculus canorus].
ACCESSION   XP_009561845
VERSION     XP_009561845.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563550.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561845.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..469
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..469
                     /product="heat shock 70 kDa protein 13"
                     /calculated_mol_wt=51593
     Region          23..450
                     /region_name="ASKHA_NBD_HSP70_HSPA13"
                     /note="nucleotide-binding domain (NBD) of heat shock 70
                     kDa protein 13 (HSPA13) and similar proteins; cd10237"
                     /db_xref="CDD:466835"
     CDS             1..469
                     /gene="HSPA13"
                     /coded_by="XM_009563550.2:74..1483"
                     /db_xref="GeneID:104061596"
ORIGIN      
        1 magqmavlgs avlalllagy laqqylpnpt pkvigidlgt tycsvgvflp gtgqvkviad
       61 enghnsipsi vsftdrdvyv gydglelads npqntiydak rfigkiftse elksessryp
      121 fkifnnngsa efsvttketf hitpehigsq lllklkrmae dylgmpiska visvpaefde
      181 rqrnstieaa nlagleilrv ineptaaama yglhkadvfn vlvvdlgggt ldvsllnkqg
      241 gmfltramag nnklggqdfn qrlmqylydq lremygslpt rkeeihrlrq aveavklnlt
      301 vheaatlrvl ltmperklsk ehpesvvktn tvlkgkpsqn tkdlgdtsev ennfvkvvfe
      361 teitrklfem lnedlfekil vpieevlkeg hlhkaevdei vlvggstrip qirkviqdff
      421 gkepntsvdp dlavvmgvai qagivggswp lqvsaielpn khlrktnfn
//
LOCUS       XP_053912422            1258 aa            linear   VRT 09-MAR-2023
DEFINITION  N-acetylglucosamine-1-phosphotransferase subunits alpha/beta
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053912422
VERSION     XP_053912422.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056447.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1258
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1258
                     /product="N-acetylglucosamine-1-phosphotransferase
                     subunits alpha/beta isoform X1"
                     /calculated_mol_wt=143306
     Region          73..101
                     /region_name="Stealth_CR1"
                     /note="Stealth protein CR1, conserved region 1; pfam17101"
                     /db_xref="CDD:465346"
     Region          137..225
                     /region_name="RRM1_GNPTAB"
                     /note="RNA recognition motif 1 (RRM1) found in
                     N-acetylglucosamine-1-phosphotransferase subunits
                     alpha/beta (GNPTAB) and similar proteins; cd21599"
                     /db_xref="CDD:410178"
     Region          218..305
                     /region_name="GlcNAc-1_reg"
                     /note="Putative GlcNAc-1 phosphotransferase regulatory
                     domain; pfam18440"
                     /db_xref="CDD:408237"
     Region          322..429
                     /region_name="Stealth_CR2"
                     /note="Stealth protein CR2, conserved region 2; pfam11380"
                     /db_xref="CDD:463267"
     Region          436..468
                     /region_name="Notch"
                     /note="LNR domain; pfam00066"
                     /db_xref="CDD:459658"
     Region          503..535
                     /region_name="Notch"
                     /note="LNR domain; pfam00066"
                     /db_xref="CDD:459658"
     Region          699..>739
                     /region_name="DMAP_binding"
                     /note="DMAP1-binding Domain; pfam06464"
                     /db_xref="CDD:368923"
     Region          957..1005
                     /region_name="Stealth_CR3"
                     /note="Stealth protein CR3, conserved region 3; pfam17102"
                     /db_xref="CDD:465347"
     Region          1140..1196
                     /region_name="Stealth_CR4"
                     /note="Stealth protein CR4, conserved region 4; pfam17103"
                     /db_xref="CDD:465348"
     CDS             1..1258
                     /gene="GNPTAB"
                     /coded_by="XM_054056447.1:70..3846"
                     /db_xref="GeneID:104058960"
ORIGIN      
        1 mllkllqrqt ytclshrygp clclgglvlm ivsalqfgev vlewsrdqyh vmfdsyrdnv
       61 agksfqnrlc lpmpidvvyt wvngtdveli kelqqvreqm eeeqkimrei lgknateptk
      121 ksekqlecll thcikvpmlv ldpalpsnvt lkdllsvhpa lqaannmffv akpknpstnv
      181 tvivfdspkd veaahsgmlr dsskqivwrg ylttdkevpg lvlmqdlafl sgfpatfket
      241 nqlrtklpes laskvkllql yseasvallq lnnpkgfqel skqakknmti dgkeltlnpa
      301 yllwdlssvs qskqdedisa srfedneelr yslrsierha pwvrhifivt ngqipswlnl
      361 dnpritivth qeifqnvshl ptfsspaies hihrisglsq kfiylnddvm fgkdvwpddf
      421 yshskgqkvy ltwpvpncae gcpgswikdg ycdkacnnsa cdwdggdcig nsggsryvag
      481 ggavggigng ppwqfgagis gvsycnqgca nswladkfcd qacnvlscgf dagdcgqdhf
      541 eemykvtlql nqtyyvvpkg eclpyfsfse iakkgiegsy sdnpiirhas vankwktihl
      601 imhsgmnatv iyfnltflnk ndeefkmqva vevdtreepk lnttsvqksn sdfvavtsip
      661 eaemifedip eekrfprvrr hrngtkeslh eevivpsvnv sllpedvqla lqnldvklln
      721 gditqkgynl skaallrpfq flttvksfig lekkgmhdhs edqknhtssq kpykdvndgk
      781 ietkkaneev pskltgtkgt vmttntnkpi ykvkpkstlp sqsmgnknet rekvlnalil
      841 retqkskrtg nldtgedtqk meggkghvqv danmreglvg rklqsyagsy qgflpwekkk
      901 yfqdlldeee sllkqmsyft dgrhfgrqlk dtfadslryv nkllnskfgf tsrkvpahmp
      961 hmidrtvmqe lqdmfpeefd ktsfhkvrhs edmqfafsyf yylmsavqpl nvsqifdevd
     1021 tdqsgilsdr eirtlatrih elplslqdlt gleqmlincs kslpanitqi hvipptqeay
     1081 ydpnlppvtk nlvtnckpvt drirkaykdk nkyrfeimge eeiafkmirt nvshvvgqld
     1141 dirknprkfv clndnidhnh kdaqtvkavl rdfyesmfpi psqfelprey rnrflhmhel
     1201 qewrayrdkl kfwthcvlvt livftvisff aeqlialkrk ifprrriqke vgheqikv
//
LOCUS       XP_053912423            1248 aa            linear   VRT 09-MAR-2023
DEFINITION  N-acetylglucosamine-1-phosphotransferase subunits alpha/beta
            isoform X2 [Cuculus canorus].
ACCESSION   XP_053912423
VERSION     XP_053912423.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056448.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1248
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1248
                     /product="N-acetylglucosamine-1-phosphotransferase
                     subunits alpha/beta isoform X2"
                     /calculated_mol_wt=141826
     Region          73..101
                     /region_name="Stealth_CR1"
                     /note="Stealth protein CR1, conserved region 1; pfam17101"
                     /db_xref="CDD:465346"
     Region          137..225
                     /region_name="RRM1_GNPTAB"
                     /note="RNA recognition motif 1 (RRM1) found in
                     N-acetylglucosamine-1-phosphotransferase subunits
                     alpha/beta (GNPTAB) and similar proteins; cd21599"
                     /db_xref="CDD:410178"
     Region          218..305
                     /region_name="GlcNAc-1_reg"
                     /note="Putative GlcNAc-1 phosphotransferase regulatory
                     domain; pfam18440"
                     /db_xref="CDD:408237"
     Region          322..429
                     /region_name="Stealth_CR2"
                     /note="Stealth protein CR2, conserved region 2; pfam11380"
                     /db_xref="CDD:463267"
     Region          436..468
                     /region_name="Notch"
                     /note="LNR domain; pfam00066"
                     /db_xref="CDD:459658"
     Region          503..535
                     /region_name="Notch"
                     /note="LNR domain; pfam00066"
                     /db_xref="CDD:459658"
     Region          699..>739
                     /region_name="DMAP_binding"
                     /note="DMAP1-binding Domain; pfam06464"
                     /db_xref="CDD:368923"
     Region          957..1005
                     /region_name="Stealth_CR3"
                     /note="Stealth protein CR3, conserved region 3; pfam17102"
                     /db_xref="CDD:465347"
     Region          1140..1196
                     /region_name="Stealth_CR4"
                     /note="Stealth protein CR4, conserved region 4; pfam17103"
                     /db_xref="CDD:465348"
     CDS             1..1248
                     /gene="GNPTAB"
                     /coded_by="XM_054056448.1:70..3816"
                     /db_xref="GeneID:104058960"
ORIGIN      
        1 mllkllqrqt ytclshrygp clclgglvlm ivsalqfgev vlewsrdqyh vmfdsyrdnv
       61 agksfqnrlc lpmpidvvyt wvngtdveli kelqqvreqm eeeqkimrei lgknateptk
      121 ksekqlecll thcikvpmlv ldpalpsnvt lkdllsvhpa lqaannmffv akpknpstnv
      181 tvivfdspkd veaahsgmlr dsskqivwrg ylttdkevpg lvlmqdlafl sgfpatfket
      241 nqlrtklpes laskvkllql yseasvallq lnnpkgfqel skqakknmti dgkeltlnpa
      301 yllwdlssvs qskqdedisa srfedneelr yslrsierha pwvrhifivt ngqipswlnl
      361 dnpritivth qeifqnvshl ptfsspaies hihrisglsq kfiylnddvm fgkdvwpddf
      421 yshskgqkvy ltwpvpncae gcpgswikdg ycdkacnnsa cdwdggdcig nsggsryvag
      481 ggavggigng ppwqfgagis gvsycnqgca nswladkfcd qacnvlscgf dagdcgqdhf
      541 eemykvtlql nqtyyvvpkg eclpyfsfse iakkgiegsy sdnpiirhas vankwktihl
      601 imhsgmnatv iyfnltflnk ndeefkmqva vevdtreepk lnttsvqksn sdfvavtsip
      661 eaemifedip eekrfprvrr hrngtkeslh eevivpsvnv sllpedvqla lqnldvklln
      721 gditqkgynl skaallrpfq flttvksfig lekkgmhdhs edqknhtssq kpykdvndgk
      781 ietkkaneev pskltgtkgt vmttntnkpi ykvkpkstlp sqsmgnknet rekvlnalil
      841 retqkskrtg nldtgedtqk meggkghvqv danmreglvg rklqsyagsy qgflpwekkk
      901 yfqdlldeee sllkqmsyft dgrhfgrqlk dtfadslryv nkllnskfgf tsrkvpahmp
      961 hmidrtvmqe lqdmfpeefd ktsfhkvrhs edmqfafsyf yylmsavqpl nvsqifdevd
     1021 tdqsgilsdr eirtlatrih elplslqdlt gleqmlincs kslpanitqi hvipptqeay
     1081 ydpnlppvtk nlvtnckpvt drirkaykdk nkyrfeimge eeiafkmirt nvshvvgqld
     1141 dirknprkfv clndnidhnh kdaqtvkavl rdfyesmfpi psqfelprey rnrflhmhel
     1201 qewrayrdkl kfwthcvlvt livftvisff aeqvgalsnp frglmksv
//
LOCUS       XP_053912425             395 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: cholinephosphotransferase 1 [Cuculus canorus].
ACCESSION   XP_053912425
VERSION     XP_053912425.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056450.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..395
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..395
                     /product="LOW QUALITY PROTEIN: cholinephosphotransferase
                     1"
                     /calculated_mol_wt=43368
     Region          13..>207
                     /region_name="PRK10832"
                     /note="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase; cl00453"
                     /db_xref="CDD:469774"
     CDS             1..395
                     /gene="CHPT1"
                     /coded_by="XM_054056450.1:16..1203"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon"
                     /db_xref="GeneID:104058961"
ORIGIN      
        1 maarwavpap lspaqlrrle qhrysaagrs llepwlqpyw cwlvrrvppr lapnaitlgg
       61 lllnclaalp liaacpsate qapswacilg alglfiyqsl daidgkqarr tnstsplgel
      121 fdhgcdsist vfvvlgscia irlgtnpdwl ffccfvglfm fysahwqtyv sgtlrfgivd
      181 vtevqiaiti lllisayggt aiwdykvplv glelkffvvf gilcgivlsf fnyfrvifgg
      241 gigkngstia gtsvlspglh igllttlaiv iykkstaqlf ekhpclyvlm fgfvnakisq
      301 klvvahmtks qislqdtafi gpgllfldqy fnsfvdeyiv lwialfislf dmlryatgvc
      361 lqiadhlhih vfrixhqape qvqavspssh qnnmd
//
LOCUS       XP_009558813             238 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptonemal complex protein 3 [Cuculus canorus].
ACCESSION   XP_009558813
VERSION     XP_009558813.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560518.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..238
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..238
                     /product="synaptonemal complex protein 3"
                     /calculated_mol_wt=27543
     Region          85..208
                     /region_name="Cor1"
                     /note="Cor1/Xlr/Xmr conserved region; pfam04803"
                     /db_xref="CDD:461436"
     CDS             1..238
                     /gene="SYCP3"
                     /coded_by="XM_009560518.2:1598..2314"
                     /db_xref="GeneID:104058929"
ORIGIN      
        1 mapsgrkhgg kaakpapdyq aipaydfkee skelsgseed iregetpimd khgkkrplvt
       61 thvvsddvgg evqnmlerfg adinkallak rkrlemytka slktsnqkie nvwktqqeqr
      121 qklnhefsqq fltlfqqwdv dvqkaeeqee klanmfrqqq kvfqqtrivq sqrlktikql
      181 ydqflksmee leksneslla gaqselrkem tmlqkkimmd tqqqemasvr kslqsmlf
//
LOCUS       XP_009566707             461 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SOX-10 [Cuculus canorus].
ACCESSION   XP_009566707
VERSION     XP_009566707.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568412.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566707.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..461
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..461
                     /product="transcription factor SOX-10"
                     /calculated_mol_wt=49785
     Region          12..87
                     /region_name="Sox_N"
                     /note="Sox developmental protein N terminal; pfam12444"
                     /db_xref="CDD:463586"
     Region          97..171
                     /region_name="HMG-box_SoxE"
                     /note="high mobility group (HMG)-box found in group E
                     SRY-related high-mobility group (HMG) box (Sox)
                     transcription factors; cd22031"
                     /db_xref="CDD:438840"
     Site            order(97..100,102..103,105..106,110,113,124..126,129,133,
                     136,155,165,167)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438840"
     CDS             1..461
                     /gene="SOX10"
                     /coded_by="XM_009568412.2:234..1619"
                     /db_xref="GeneID:104065878"
ORIGIN      
        1 maddqdlsev emspvgsedh hclspgpsma sdnsphlags gngemgkvkk eqqdseaddd
       61 kfpvcireav sqvlsgydwt lvpmpvrvng snkskphvkr pmnafmvwaq aarrkladqy
      121 phlhnaelsk tlgklwrlln esdkrpfiee aerlrmqhkk dhpdykyqpr rrkngkatqg
      181 egegqveaea ggaaaiqahy knahldhrhp gegspmsdgh pehssgqshg pptppttpkt
      241 elqagkadsk regrslgegg kphidfgnvd igeishevms nmetfdvnef dqylppnght
      301 ghpghvggya aaagyglgsa laaasghsaw iskqhgvsls tatssvvdsk aqvktegstp
      361 gghytdqpst sqiaytslsl phygsafpsi srpqfdypdh qpsgpyyshs sqasglysaf
      421 symgpsqrpl ytaisdptps vpqshspthw eqpvyttlsr p
//
LOCUS       XP_009562012             437 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich repeat-containing protein 17 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009562012
VERSION     XP_009562012.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563717.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..437
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..437
                     /product="leucine-rich repeat-containing protein 17
                     isoform X1"
                     /calculated_mol_wt=51477
     Region          60..82
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          83..103
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <95..>345
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          104..127
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          128..151
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          152..185
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          186..255
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          256..287
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          266..322
                     /region_name="LRR_8"
                     /note="Leucine rich repeat; pfam13855"
                     /db_xref="CDD:404697"
     Region          288..311
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          312..335
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     CDS             1..437
                     /gene="LRRC17"
                     /coded_by="XM_009563717.2:562..1875"
                     /db_xref="GeneID:104061746"
ORIGIN      
        1 mqvvtitlll llckafdcrk trnrslrnne renilrkass tvkrnaqglp cdiytylhek
       61 yldcqerkli fvssdwpedl khmllarnri rklknnmfsk ykvlksldlq qndiskiese
      121 affglnkltt lllqhnqiks lseeifiytp slnylrlydn pwhcncelet lvtmlqvptn
      181 rnlgnyakcv hpielknqkl kqikaeqlcs eedrqdpqni kqkpeavkpe fdsslchmyv
      241 fpaptlnckr kdlkkvpgni ppdivrldls snkirqlrak efedvselki lnlnsngiay
      301 idpaafsgln nleeldlsnn slqnfeygvl edlyflkilw lrenpwrcdy nihylfywlk
      361 hhynvhyngl eckmpeeykg wsvgkyvrsy yeecpkdklp iypetfdvdk ddeewerhke
      421 qsiqtvkqhg vivtvig
//
LOCUS       XP_053912426             437 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich repeat-containing protein 17 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912426
VERSION     XP_053912426.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056451.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..437
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..437
                     /product="leucine-rich repeat-containing protein 17
                     isoform X1"
                     /calculated_mol_wt=51477
     Region          60..82
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          83..103
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <95..>345
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          104..127
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          128..151
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          152..185
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          186..255
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          256..287
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          266..322
                     /region_name="LRR_8"
                     /note="Leucine rich repeat; pfam13855"
                     /db_xref="CDD:404697"
     Region          288..311
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          312..335
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     CDS             1..437
                     /gene="LRRC17"
                     /coded_by="XM_054056451.1:2132..3445"
                     /db_xref="GeneID:104061746"
ORIGIN      
        1 mqvvtitlll llckafdcrk trnrslrnne renilrkass tvkrnaqglp cdiytylhek
       61 yldcqerkli fvssdwpedl khmllarnri rklknnmfsk ykvlksldlq qndiskiese
      121 affglnkltt lllqhnqiks lseeifiytp slnylrlydn pwhcncelet lvtmlqvptn
      181 rnlgnyakcv hpielknqkl kqikaeqlcs eedrqdpqni kqkpeavkpe fdsslchmyv
      241 fpaptlnckr kdlkkvpgni ppdivrldls snkirqlrak efedvselki lnlnsngiay
      301 idpaafsgln nleeldlsnn slqnfeygvl edlyflkilw lrenpwrcdy nihylfywlk
      361 hhynvhyngl eckmpeeykg wsvgkyvrsy yeecpkdklp iypetfdvdk ddeewerhke
      421 qsiqtvkqhg vivtvig
//
LOCUS       XP_053912427             437 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich repeat-containing protein 17 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912427
VERSION     XP_053912427.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056452.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..437
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..437
                     /product="leucine-rich repeat-containing protein 17
                     isoform X1"
                     /calculated_mol_wt=51477
     Region          60..82
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          83..103
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <95..>345
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          104..127
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          128..151
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          152..185
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          186..255
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          256..287
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          266..322
                     /region_name="LRR_8"
                     /note="Leucine rich repeat; pfam13855"
                     /db_xref="CDD:404697"
     Region          288..311
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          312..335
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     CDS             1..437
                     /gene="LRRC17"
                     /coded_by="XM_054056452.1:2046..3359"
                     /db_xref="GeneID:104061746"
ORIGIN      
        1 mqvvtitlll llckafdcrk trnrslrnne renilrkass tvkrnaqglp cdiytylhek
       61 yldcqerkli fvssdwpedl khmllarnri rklknnmfsk ykvlksldlq qndiskiese
      121 affglnkltt lllqhnqiks lseeifiytp slnylrlydn pwhcncelet lvtmlqvptn
      181 rnlgnyakcv hpielknqkl kqikaeqlcs eedrqdpqni kqkpeavkpe fdsslchmyv
      241 fpaptlnckr kdlkkvpgni ppdivrldls snkirqlrak efedvselki lnlnsngiay
      301 idpaafsgln nleeldlsnn slqnfeygvl edlyflkilw lrenpwrcdy nihylfywlk
      361 hhynvhyngl eckmpeeykg wsvgkyvrsy yeecpkdklp iypetfdvdk ddeewerhke
      421 qsiqtvkqhg vivtvig
//
LOCUS       XP_053912428             437 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich repeat-containing protein 17 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912428
VERSION     XP_053912428.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056453.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..437
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..437
                     /product="leucine-rich repeat-containing protein 17
                     isoform X1"
                     /calculated_mol_wt=51477
     Region          60..82
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          83..103
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <95..>345
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          104..127
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          128..151
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          152..185
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          186..255
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          256..287
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          266..322
                     /region_name="LRR_8"
                     /note="Leucine rich repeat; pfam13855"
                     /db_xref="CDD:404697"
     Region          288..311
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          312..335
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     CDS             1..437
                     /gene="LRRC17"
                     /coded_by="XM_054056453.1:178..1491"
                     /db_xref="GeneID:104061746"
ORIGIN      
        1 mqvvtitlll llckafdcrk trnrslrnne renilrkass tvkrnaqglp cdiytylhek
       61 yldcqerkli fvssdwpedl khmllarnri rklknnmfsk ykvlksldlq qndiskiese
      121 affglnkltt lllqhnqiks lseeifiytp slnylrlydn pwhcncelet lvtmlqvptn
      181 rnlgnyakcv hpielknqkl kqikaeqlcs eedrqdpqni kqkpeavkpe fdsslchmyv
      241 fpaptlnckr kdlkkvpgni ppdivrldls snkirqlrak efedvselki lnlnsngiay
      301 idpaafsgln nleeldlsnn slqnfeygvl edlyflkilw lrenpwrcdy nihylfywlk
      361 hhynvhyngl eckmpeeykg wsvgkyvrsy yeecpkdklp iypetfdvdk ddeewerhke
      421 qsiqtvkqhg vivtvig
//
LOCUS       XP_053912429             309 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich repeat-containing protein 17 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912429
VERSION     XP_053912429.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056454.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..309
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..309
                     /product="leucine-rich repeat-containing protein 17
                     isoform X2"
                     /calculated_mol_wt=36032
     Region          60..79
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          80..138
                     /region_name="LRR_8"
                     /note="Leucine rich repeat; pfam13855"
                     /db_xref="CDD:404697"
     Region          80..103
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          104..127
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          128..151
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          152..164
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          160..>198
                     /region_name="LRRCT"
                     /note="Leucine rich repeat C-terminal domain; smart00082"
                     /db_xref="CDD:214507"
     Region          186..219
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          220..266
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          266..>305
                     /region_name="LRR_8"
                     /note="Leucine rich repeat; pfam13855"
                     /db_xref="CDD:404697"
     Region          267..287
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     CDS             1..309
                     /gene="LRRC17"
                     /coded_by="XM_054056454.1:567..1496"
                     /db_xref="GeneID:104061746"
ORIGIN      
        1 mqvvtitlll llckafdcrk trnrslrnne renilrkass tvkrnaqglp cdiytylhek
       61 yldcqerkli fvssdwpedl khmllarnri rklknnmfsk ykvlksldlq qndiskiese
      121 affglnkltt lllqhnqiks lseeifiytp slnylrlydn pwhcncelet lvtmlqvptn
      181 rnlgnyakcv hpielknqkl kqikaeqlcs eedrqdpqni kqkpeavkpe fdsslchmyv
      241 fpaptlnckr kdlkkvpgni ppdivrldls snkirqlrak efedvselki lnlnsngiay
      301 idpdmdvff
//
LOCUS       XP_009559684             364 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM185A [Cuculus canorus].
ACCESSION   XP_009559684
VERSION     XP_009559684.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009561389.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009559684.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..364
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..364
                     /product="protein FAM185A"
                     /calculated_mol_wt=39293
     Region          <189..351
                     /region_name="YvlB"
                     /note="Uncharacterized conserved protein YvlB, contains
                     DUF4097 and DUF4098 domains [Function unknown]; COG3595"
                     /db_xref="CDD:442814"
     CDS             1..364
                     /gene="FAM185A"
                     /coded_by="XM_009561389.2:68..1162"
                     /db_xref="GeneID:104059687"
ORIGIN      
        1 mrrlsprwga lavraaatgg rwgplvprrg caeaggrqpv eewslavspr grlrvrlpcq
       61 vsvrpldprr cprgdrvlva agggdparlr veydqdreqv aivgdgvdsk aavdvrtpvk
      121 fdldiktsgt gcvkiqkiec dncrietekg tsvlqsiksq kidirtnggk viglgtlygn
      181 tdihatekgs vnieklqgts inisteygll ktkylyaets slsseagdil lgsihgntnl
      241 qtktgsitvd asdgslkast hhgsidvyvs qlrkvdlksq kgsitvkvpa slkaylqlsg
      301 rkvdvsseiq lketesaskd drvtisghmn qkdetdkwik adtqngkvyl ksqswiqsik
      361 lkgs
//
LOCUS       XP_009556955             257 aa            linear   VRT 09-MAR-2023
DEFINITION  60S ribosomal protein L8 [Cuculus canorus].
ACCESSION   XP_009556955
VERSION     XP_009556955.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009558660.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..257
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..257
                     /product="60S ribosomal protein L8"
                     /calculated_mol_wt=27906
     Region          1..254
                     /region_name="PTZ00180"
                     /note="60S ribosomal protein L8; Provisional"
                     /db_xref="CDD:173464"
     CDS             1..257
                     /gene="RPL8"
                     /coded_by="XM_009558660.2:151..924"
                     /db_xref="GeneID:104057310"
ORIGIN      
        1 mgrvirgqrk gagsvfrahv khrkgpaklr avdfaerhgy ikgivkdiih dpgrgaplak
       61 iafrdpyrfk krtelfiaae gihtgqfvyc gkkaqlnign vlpvgtmpeg tivccleekp
      121 gdrgklaras gnyatvishn petkktrvkl psgskkviss anraivgiva gggridkpil
      181 kagrayhkyk akrncwprvr gvamnpvehp fgggnhqhig kpstirrdap agrkvgliaa
      241 rrtgrlrgtk tvqeken
//
LOCUS       XP_009567536            2805 aa            linear   VRT 09-MAR-2023
DEFINITION  von Willebrand factor [Cuculus canorus].
ACCESSION   XP_009567536
VERSION     XP_009567536.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009569241.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567536.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2805
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2805
                     /product="von Willebrand factor"
                     /calculated_mol_wt=312238
     Region          23..176
                     /region_name="VWD"
                     /note="von Willebrand factor (vWF) type D domain;
                     smart00216"
                     /db_xref="CDD:214566"
     Region          222..289
                     /region_name="C8"
                     /note="C8 domain; pfam08742"
                     /db_xref="CDD:462584"
     Region          293..346
                     /region_name="TIL"
                     /note="trypsin inhibitor-like cysteine rich domain;
                     cd19941"
                     /db_xref="CDD:410995"
     Site            order(302,306,319,323)
                     /site_type="other"
                     /note="reactive site [polypeptide binding]"
                     /db_xref="CDD:410995"
     Region          348..398
                     /region_name="VWC"
                     /note="von Willebrand factor type C domain; cl17735"
                     /db_xref="CDD:450195"
     Region          386..539
                     /region_name="VWD"
                     /note="von Willebrand factor type D domain; pfam00094"
                     /db_xref="CDD:459671"
     Region          576..647
                     /region_name="C8"
                     /note="This domain contains 8 conserved cysteine residues;
                     smart00832"
                     /db_xref="CDD:214843"
     Region          650..705
                     /region_name="TIL"
                     /note="trypsin inhibitor-like cysteine rich domain;
                     cd19941"
                     /db_xref="CDD:410995"
     Site            order(659,663,677,681)
                     /site_type="other"
                     /note="reactive site [polypeptide binding]"
                     /db_xref="CDD:410995"
     Region          <786..825
                     /region_name="TIL"
                     /note="trypsin inhibitor-like cysteine rich domain;
                     cd19941"
                     /db_xref="CDD:410995"
     Region          854..1009
                     /region_name="VWD"
                     /note="von Willebrand factor (vWF) type D domain;
                     smart00216"
                     /db_xref="CDD:214566"
     Region          1060..1127
                     /region_name="C8"
                     /note="This domain contains 8 conserved cysteine residues;
                     smart00832"
                     /db_xref="CDD:214843"
     Region          1146..1196
                     /region_name="TIL"
                     /note="trypsin inhibitor-like cysteine rich domain;
                     cd19941"
                     /db_xref="CDD:410995"
     Site            order(1149,1153,1165,1169)
                     /site_type="other"
                     /note="reactive site [polypeptide binding]"
                     /db_xref="CDD:410995"
     Region          1198..1268
                     /region_name="VWA_N2"
                     /note="VWA N-terminal; pfam16164"
                     /db_xref="CDD:465038"
     Region          1268..1426
                     /region_name="vWFA_subfamily_ECM"
                     /note="Von Willebrand factor type A (vWA) domain was
                     originally found in the blood coagulation protein von
                     Willebrand factor (vWF). Typically, the vWA domain is made
                     up of approximately 200 amino acid residues folded into a
                     classic a/b para-rossmann type of...; cd01450"
                     /db_xref="CDD:238727"
     Site            order(1268,1270,1291,1372,1374,1400,1426)
                     /site_type="active"
                     /note="integrin inhibitor binding pocket [active]"
                     /db_xref="CDD:238727"
     Site            order(1275,1277,1279,1347,1378)
                     /site_type="other"
                     /note="metal ion-dependent adhesion site (MIDAS)"
                     /db_xref="CDD:238727"
     Site            order(1277..1279,1281,1347)
                     /site_type="active"
                     /note="integrin-collagen binding site [active]"
                     /db_xref="CDD:238727"
     Site            order(1307,1322..1323,1334..1335)
                     /site_type="active"
                     /note="putative vWF-collagen binding site [active]"
                     /db_xref="CDD:238727"
     Site            order(1316..1317,1319,1351,1354,1358..1359)
                     /site_type="other"
                     /note="glycoprotein Ib (GpIb) binding site [polypeptide
                     binding]"
                     /db_xref="CDD:238727"
     Region          1490..1647
                     /region_name="VWA"
                     /note="von Willebrand factor type A domain; pfam00092"
                     /db_xref="CDD:459670"
     Region          1679..1851
                     /region_name="VWA"
                     /note="von Willebrand factor type A domain; pfam00092"
                     /db_xref="CDD:459670"
     Region          1939..2091
                     /region_name="VWD"
                     /note="von Willebrand factor type D domain; pfam00094"
                     /db_xref="CDD:459671"
     Region          2121..2189
                     /region_name="C8"
                     /note="This domain contains 8 conserved cysteine residues;
                     smart00832"
                     /db_xref="CDD:214843"
     Region          2192..2245
                     /region_name="TIL"
                     /note="Trypsin Inhibitor like cysteine rich domain;
                     pfam01826"
                     /db_xref="CDD:460351"
     Site            order(2201,2205,2218,2222)
                     /site_type="other"
                     /note="reactive site [polypeptide binding]"
                     /db_xref="CDD:410995"
     Region          2252..2312
                     /region_name="VWC"
                     /note="von Willebrand factor (vWF) type C domain;
                     smart00214"
                     /db_xref="CDD:214564"
     Region          2422..2485
                     /region_name="VWC"
                     /note="von Willebrand factor (vWF) type C domain;
                     smart00214"
                     /db_xref="CDD:214564"
     Region          2719..2798
                     /region_name="GHB_like"
                     /note="Glycoprotein hormone beta chain homologues;
                     cl21545"
                     /db_xref="CDD:473907"
     CDS             1..2805
                     /gene="VWF"
                     /coded_by="XM_009569241.2:156..8573"
                     /db_xref="GeneID:104066615"
ORIGIN      
        1 mlvsavlltn lllatvisgs sgsllqesal srcslfgndh iktfdgsfyd fagdcsylla
       61 gdchkrsfti lgdyqdgekt gfsvylgeyf nlrfsleggv mqedksvsip fasngifiek
      121 eagyckissd ehgfvvkidt ggniqillqe khynktcglc gnfnkfaedd frtqegtlvg
      181 nsydfanswa lhsknkqckr vqtpsntcni ssdiaeedim eicqllrtsl ifskchhrvd
      241 pepylylcer dicactqgmd chcsafldya rscnnegvil dgwpeesscr prcpvgmeyk
      301 ecvspcaktc qslninevch gqcvdgcscp dgklldgeqc vessdcscth sgkhyppgft
      361 isqdcnscic rrgtwicsng ecpgecsvsg qshfksfdnk yftfsgicqy llakdcvens
      421 fsviietvqc addpdavctr sasvrlrdmd nslikmkhgg gislngqdiq ipllqgalri
      481 qrtvrtsvrl sygedlqidw dghgellvkl savysermcg lcgnyngnqg ddfltpsgma
      541 ealledfgns wklnadcqdl tkqdsdpctl nprlakyaee scsvlmssaf epchhevspt
      601 pyvkncrfdv cscsngkdcl csavanyaaa carrsilvqw repdfcpmtc pegqvyqqcg
      661 tpcnqtcrsl sypdedcdel cvegcycppg hyldehekcv pkshcscyyd geifqpedvf
      721 sdhytmcyce ngfmhcstnr ipgaflpdvf aderpsprik rsltcrspme rficpannpr
      781 aeglecaktc qnydlecish gcisgclcpk gmvrhenkcv apercpcfhn greyakgetv
      841 tndcntcvcr grkwecskni cdgtctvigt ahyltfdglk yrfpgncqyv lvqdfckdnt
      901 gtfrilisne gcgftgekct krivilyesg eielfngnvn iklppkdgnd leviksgryy
      961 iillgrgisv twdlamgvsv ilkgnykdqv cglcgnfdgi qnndltssne hlevdpvdfg
     1021 nswkvnsyca dvekpsweqt lmsplcngnv lkqvmvetsc silsgdlfde ckklvnpepy
     1081 idiclydtca cesigdcacf cdaiaayahv caqngvavhw rsptlcpqsc edlnkqeldy
     1141 qcewrynscg pacpitcqhp qplecplqcv egchvhcpag kildelsldc vspddcpvca
     1201 vgdvkiphgr rivlnrddpq hcqsclcegk nltciacepv edtltsttpa peedvelpps
     1261 eyscskmmdl aflldgsnkl seedfeqlkt fiigmmkklh isqkkirvsi lvyragptiy
     1321 lglkdiktqs qmrkivqsik ytgdevasaa evlkytvfhv fgkaertnaa riavlfiask
     1381 spgklrsilt alknkkiavm pvgigphinv eqirfiekqs pdnrafimnn vlelmdnrel
     1441 lidrlcalgp aessllqtts spmissvlfs pwglttpppf seepsskkld iafivegsdn
     1501 vgeenfslvk kflervitem nvgqenihvt vmqysenvtl eysfreiqsk esiiekvrsi
     1561 pyqggkatnt gnaldyiskh tftqvnggrq dvphlvymvs sspstdvitr pprsinvipi
     1621 gitpnaniqe lrkisqpsnp iilhsyntli eeapelvlqs ccsriswtei pelcnkqmdv
     1681 mflldgssni gasefeemkr fvrtfiqrae isntsihvsv lqyarennle iswnvpqete
     1741 klvemlqsiq qreqgptrlg kaidfvvqna mseshggrsn askiaivivs grsedtvesa
     1801 alsarmnrvs lfpigvgnry deeqlrtltg psaayrimkl qnfedlstmi tlnsefikkv
     1861 cmdpirecid edgnkrkpge qwtlpdqcht vtcfpgdytv leshqincer mpkpvchsnl
     1921 pavkieetcg crwmcpcvci gsssrhivtf dglnfkltgn csytlfrdmq hdvevllheg
     1981 pcratpkmnc mdsievkhrg vsiqllsdme vsvngervhi pyssslievt vygaimheik
     2041 fshlghnltf tprnnefvlk lnsksfssgt qglcgvcdqn hindfklrdg svtpdsnifi
     2101 qdwmveepgk iceirreerc fehatshchl llsdkfadch riispnmfye acaesscyed
     2161 eacemitsya hicrengvci dwrtpefcpm kcptyltydh chracikhce nstklsvckd
     2221 yptegcfcpd gqlifngscv geevctqcvs edgtlhqhme twiptnepck ictclekqkv
     2281 tctfrpcpta ktaqcgpcev prlrrdpgqc cptyecvcdl vscdlppapv cefglqlalt
     2341 npgecrpnyt cacnreacsl vqrpscpphr eltvkktecc dkyectcsct nstvscplgy
     2401 lsrsltndcg clsttcvpgr vcvhnsivyp vgttwedgcr ecfctsmvdd vtglqmiech
     2461 dkacntfcsq gykytvqege ccgrcqktac eeqlfwsrgd agprlhevgt ewrspfnhci
     2521 inecvrvnne vfvqqknlsc sqmdvpdcpe gmelrcdqii dccpscrcvp lngcplngtv
     2581 igpwrrlmvd qcttclcslq stssrrytlt ctkfscepcp inyrrqeipg sccgkcvpts
     2641 cgirlrdgrl kylqpnesfq dgcdshsckv nekgefiwer ritgcppfda rrclaeggri
     2701 akigntccdt cvevecrpvs trlqytsing cvaekevpis hcegkcrsnt rysvqtgkwe
     2761 dvcscctatq ttivtiplrc angtvvqhyi psasqcecys rkctd
//
LOCUS       XP_053912431            1029 aa            linear   VRT 09-MAR-2023
DEFINITION  anoctamin-2 [Cuculus canorus].
ACCESSION   XP_053912431
VERSION     XP_053912431.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056456.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1029
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1029
                     /product="anoctamin-2"
                     /calculated_mol_wt=118307
     Region          101..381
                     /region_name="Anoct_dimer"
                     /note="dimerization domain of Ca+-activated
                     chloride-channel, anoctamin; pfam16178"
                     /db_xref="CDD:465044"
     Region          384..964
                     /region_name="Anoctamin"
                     /note="Calcium-activated chloride channel; pfam04547"
                     /db_xref="CDD:461349"
     CDS             1..1029
                     /gene="ANO2"
                     /coded_by="XM_054056456.1:49..3138"
                     /db_xref="GeneID:104066635"
ORIGIN      
        1 mqlpakppdn methppdfpl afshqilkgq ktaksardsf saynskyltv pqnrtslhps
       61 ringafeaps cvesfsspii nnyldgtqgg aedkaspggm yfrdskrkvd yvlayhyrkr
      121 ltrhppgmgl pepmhrsasl alvlnggagk shaeqqqehg gqhalqeqvg tpwtevielg
      181 pldaleeekl lqreefernl meagleiekd penksqglsf vrihapwqvl sreaellkik
      241 mptkklyeit eeggilkkln emwckltepl qpqvpqqgdt nmkslsypfs rekiylynik
      301 dkdtffdnat rsrivreilk rtsakarnsm gigtliannv yeaayplhdg eyegqndgmn
      361 erkllyrewa rygvfykfqp idlirkyfge kialyfawlg lyteflipss vvgiivflyg
      421 citiesdips kemcdqrnaf tmcplcdkfc dywnlssaca tarashlfdn patvffsifm
      481 alwatmfleq wkrlqmrlny fwdltgleee eehprpeyet kllqkklknk nivtetsned
      541 ekekltwndr mpgyaanfgl ilfmimltfs avfgviiyri ttaaalsfst nettrsnvrv
      601 tvtataviin lvvilildei ygavakwlte ieipktektf eerlilkafl lkfvnsyapi
      661 fyvaffkgrf vgrpghyvyv fdgyrmeeca pggclmelci qlsiimlgkq liqnnlfeig
      721 ipklkklfrk lkderteake mdtnqsknph qwdldytlep ftgltpeyme miiqfgfvtl
      781 fvasfplapl fallnniiev rldakkfvte lrrpdtvrak digiwfnils cigklsviin
      841 afviavtsdf iprlmyqyay sqngtmhgfi nhtlsyfnvs hlkagtqpen slfaqdvlfc
      901 rfkdyreppw sknqyefskq ywavlsarla fvilfqnlvm flsvmvdwmi pdipkdiseq
      961 ikkeksvlvd fflkeehekl kliesfitrd kqkhksgtkg eriraasfcq lnrsqkgsfa
     1021 sfssqhtev
//
LOCUS       XP_053912432            1047 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat and BTB/POZ domain-containing protein 3 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053912432
VERSION     XP_053912432.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056457.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1047
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1047
                     /product="ankyrin repeat and BTB/POZ domain-containing
                     protein 3 isoform X1"
                     /calculated_mol_wt=115909
     Region          195..322
                     /region_name="HFD_ABTB2-like"
                     /note="histone-fold domain found in ankyrin repeat and
                     BTB/POZ domain-containing protein 2 (ABTB2) and similar
                     proteins; cd22913"
                     /db_xref="CDD:467038"
     Region          <523..744
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          549..590
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(552..553,556..558,560..561,565,568,590,592,594,
                     598..599,602..604,606..607,611,614,623,625,632,636..637,
                     640..642,644..645,649,652)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          592..623
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          625..655
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          842..972
                     /region_name="BTB_POZ_BTBD11"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in BTB/POZ
                     domain-containing protein 11 (BTBD11); cd18351"
                     /db_xref="CDD:349660"
     Region          965..1047
                     /region_name="BACK_BTBD11"
                     /note="BACK (BTB and C-terminal Kelch) domain found in
                     BTB/POZ domain-containing protein 11 (BTBD11); cd18527"
                     /db_xref="CDD:350602"
     CDS             1..1047
                     /gene="ABTB3"
                     /coded_by="XM_054056457.1:224..3367"
                     /db_xref="GeneID:104056361"
ORIGIN      
        1 marrgktavr tledltldsg yggaadsvrs snlslccsds hpaypyggsc wphltdsmhs
       61 rhnsfdtvnt vlaedsevld cagqqcsrll pdleevpwsl eevealllpp pprreprtpg
      121 sgspgsrdaa arlstlvsra lvriareaqr lslrfakctk hevrsameiv lgwtlsarct
      181 aaalsalsly nmsgsggdrf srgksarcgl afsvgkfyrw mvdsrvalri hehaaiylta
      241 gteslfrdih arvlagsaap lpppgrpppa aaaaapgeke keggeaprft lealeqtvnn
      301 dpelwgllqp yqhlicgkna sgvlclpdsl nlhkdqqrsn kpgevqmfsq selrtieqsl
      361 latrvgsise lsdlvsramh hlqplnakqh gngtpmhqkq gslywepeal ytlcyfmhcp
      421 qmewenpnve pskvtlqter pfivlpplme wirvavahag hrrsfsvdsd dvrqaarlll
      481 pgvdceprql kiddcfcasr kldavateak fkqdlgfrml ncgrtdlvkq aisllgpdgi
      541 nsmseqgmtp lmyacvrgde amvqmlldag adlnaevvst ahkypsvhpe trhwtaltfa
      601 vlhghipvvq llldagakve gslehgeeny setplqlaaa agnfelvsll lergadpmig
      661 tmyrngismt pqgdmnsfsq aaahghrnvf rkllaqpekd ksdilsleei laegtdlpds
      721 gaaplcasrn skaklkalke amyhsaehgy vdvtidirsi gvpwtlhtwl eslrtsfqqh
      781 rrpliqcllk efksiqeeey teelitqglp lmfeilkask nevisqqlsv ifthcygpyp
      841 ipklveikrk qtsrldphfl nnkemsdvtf lvegrpfyah rvllftaspr fkallsskps
      901 sdstcieiny vkypifqlvm qylyyggaes lliknneime llsaakffql ealqrhceii
      961 caksintenc vdiynhakfl gvtelasyce gyflknmmvl ieneafkqll ydkngeasgq
     1021 nvlqdlqrtl atriqsihls sskgsiv
//
LOCUS       XP_053912433            1017 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat and BTB/POZ domain-containing protein 3 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053912433
VERSION     XP_053912433.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056458.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1017
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1017
                     /product="ankyrin repeat and BTB/POZ domain-containing
                     protein 3 isoform X2"
                     /calculated_mol_wt=112740
     Region          195..322
                     /region_name="HFD_ABTB2-like"
                     /note="histone-fold domain found in ankyrin repeat and
                     BTB/POZ domain-containing protein 2 (ABTB2) and similar
                     proteins; cd22913"
                     /db_xref="CDD:467038"
     Region          523..589
                     /region_name="Ank_2"
                     /note="Ankyrin repeats (3 copies); pfam12796"
                     /db_xref="CDD:463710"
     Region          <564..>666
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          564..598
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          600..626
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          812..942
                     /region_name="BTB_POZ_BTBD11"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in BTB/POZ
                     domain-containing protein 11 (BTBD11); cd18351"
                     /db_xref="CDD:349660"
     Region          935..1017
                     /region_name="BACK_BTBD11"
                     /note="BACK (BTB and C-terminal Kelch) domain found in
                     BTB/POZ domain-containing protein 11 (BTBD11); cd18527"
                     /db_xref="CDD:350602"
     CDS             1..1017
                     /gene="ABTB3"
                     /coded_by="XM_054056458.1:224..3277"
                     /db_xref="GeneID:104056361"
ORIGIN      
        1 marrgktavr tledltldsg yggaadsvrs snlslccsds hpaypyggsc wphltdsmhs
       61 rhnsfdtvnt vlaedsevld cagqqcsrll pdleevpwsl eevealllpp pprreprtpg
      121 sgspgsrdaa arlstlvsra lvriareaqr lslrfakctk hevrsameiv lgwtlsarct
      181 aaalsalsly nmsgsggdrf srgksarcgl afsvgkfyrw mvdsrvalri hehaaiylta
      241 gteslfrdih arvlagsaap lpppgrpppa aaaaapgeke keggeaprft lealeqtvnn
      301 dpelwgllqp yqhlicgkna sgvlclpdsl nlhkdqqrsn kpgevqmfsq selrtieqsl
      361 latrvgsise lsdlvsramh hlqplnakqh gngtpmhqkq gslywepeal ytlcyfmhcp
      421 qmewenpnve pskvtlqter pfivlpplme wirvavahag hrrsfsvdsd dvrqaarlll
      481 pgvdceprql kiddcfcasr kldavateak fkqdlgfrml ncgrtdlvkq aisllgpdgi
      541 nsmseqvvst ahkypsvhpe trhwtaltfa vlhghipvvq llldagakve gslehgeeny
      601 setplqlaaa agnfelvsll lergadpmig tmyrngismt pqgdmnsfsq aaahghrnvf
      661 rkllaqpekd ksdilsleei laegtdlpds gaaplcasrn skaklkalke amyhsaehgy
      721 vdvtidirsi gvpwtlhtwl eslrtsfqqh rrpliqcllk efksiqeeey teelitqglp
      781 lmfeilkask nevisqqlsv ifthcygpyp ipklveikrk qtsrldphfl nnkemsdvtf
      841 lvegrpfyah rvllftaspr fkallsskps sdstcieiny vkypifqlvm qylyyggaes
      901 lliknneime llsaakffql ealqrhceii caksintenc vdiynhakfl gvtelasyce
      961 gyflknmmvl ieneafkqll ydkngeasgq nvlqdlqrtl atriqsihls sskgsiv
//
LOCUS       XP_053912434            1013 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat and BTB/POZ domain-containing protein 3 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053912434
VERSION     XP_053912434.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056459.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1013
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1013
                     /product="ankyrin repeat and BTB/POZ domain-containing
                     protein 3 isoform X3"
                     /calculated_mol_wt=112111
     Region          195..322
                     /region_name="HFD_ABTB2-like"
                     /note="histone-fold domain found in ankyrin repeat and
                     BTB/POZ domain-containing protein 2 (ABTB2) and similar
                     proteins; cd22913"
                     /db_xref="CDD:467038"
     Region          <523..710
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          549..575
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          591..621
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          808..938
                     /region_name="BTB_POZ_BTBD11"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in BTB/POZ
                     domain-containing protein 11 (BTBD11); cd18351"
                     /db_xref="CDD:349660"
     Region          931..1013
                     /region_name="BACK_BTBD11"
                     /note="BACK (BTB and C-terminal Kelch) domain found in
                     BTB/POZ domain-containing protein 11 (BTBD11); cd18527"
                     /db_xref="CDD:350602"
     CDS             1..1013
                     /gene="ABTB3"
                     /coded_by="XM_054056459.1:224..3265"
                     /db_xref="GeneID:104056361"
ORIGIN      
        1 marrgktavr tledltldsg yggaadsvrs snlslccsds hpaypyggsc wphltdsmhs
       61 rhnsfdtvnt vlaedsevld cagqqcsrll pdleevpwsl eevealllpp pprreprtpg
      121 sgspgsrdaa arlstlvsra lvriareaqr lslrfakctk hevrsameiv lgwtlsarct
      181 aaalsalsly nmsgsggdrf srgksarcgl afsvgkfyrw mvdsrvalri hehaaiylta
      241 gteslfrdih arvlagsaap lpppgrpppa aaaaapgeke keggeaprft lealeqtvnn
      301 dpelwgllqp yqhlicgkna sgvlclpdsl nlhkdqqrsn kpgevqmfsq selrtieqsl
      361 latrvgsise lsdlvsramh hlqplnakqh gngtpmhqkq gslywepeal ytlcyfmhcp
      421 qmewenpnve pskvtlqter pfivlpplme wirvavahag hrrsfsvdsd dvrqaarlll
      481 pgvdceprql kiddcfcasr kldavateak fkqdlgfrml ncgrtdlvkq aisllgpdgi
      541 nsmseqgmtp lmyacvrgde amvqmlldag adlnaellld agakvegsle hgeenysetp
      601 lqlaaaagnf elvslllerg adpmigtmyr ngismtpqgd mnsfsqaaah ghrnvfrkll
      661 aqpekdksdi lsleeilaeg tdlpdsgaap lcasrnskak lkalkeamyh saehgyvdvt
      721 idirsigvpw tlhtwleslr tsfqqhrrpl iqcllkefks iqeeeyteel itqglplmfe
      781 ilkasknevi sqqlsvifth cygpypipkl veikrkqtsr ldphflnnke msdvtflveg
      841 rpfyahrvll ftasprfkal lsskpssdst cieinyvkyp ifqlvmqyly yggaesllik
      901 nneimellsa akffqlealq rhceiicaks intencvdiy nhakflgvte lasycegyfl
      961 knmmvliene afkqllydkn geasgqnvlq dlqrtlatri qsihlssskg siv
//
LOCUS       XP_009560728             424 aa            linear   VRT 09-MAR-2023
DEFINITION  tyrosine-protein kinase STYK1 [Cuculus canorus].
ACCESSION   XP_009560728
VERSION     XP_009560728.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009562433.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009560728.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..424
                     /product="tyrosine-protein kinase STYK1"
                     /calculated_mol_wt=47806
     Region          124..383
                     /region_name="PTKc"
                     /note="Catalytic domain of Protein Tyrosine Kinases;
                     cd00192"
                     /db_xref="CDD:270623"
     Site            order(124..126,130,147,149,196..199,202..203,253,257..258,
                     260,271,287..291,300,334)
                     /site_type="active"
                     /db_xref="CDD:270623"
     Site            order(125..126,130,147,149,196..199,202..203,257..258,260,
                     271)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270623"
     Site            order(253,257,287..291,300,334)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270623"
     Site            order(270..275,287..293)
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270623"
     CDS             1..424
                     /gene="STYK1"
                     /coded_by="XM_009562433.2:711..1985"
                     /db_xref="GeneID:104060624"
ORIGIN      
        1 mtrdakrftr mllecnsndk lcvvreyqte vivvpvilvg ffvivltvil wlhcrglrak
       61 qeqsssgeqv kdknqqesss aedhyiqlse asvesllnsa sltlkeleip reklsqgtlq
      121 lvkrgrygni yraqletgnp rktktvvlkt lqdmassqev enflgrikfh qnlghhenlv
      181 ellgccvdqf plymimedas lgdlltflwt crkdvmtmdg ipydlterqv ykvgqqvaaa
      241 layleqkklf hgdiaarnvl lhhnftaklc glglayetlt ygansvtqtv pvkwqapeql
      301 lkkspsikad iwsfgillye mitlgappyp evppsdilsy lqrqnimkqp sscqqamyni
      361 mkscwqwnat nrpspadliq slqramktsn dravlqvpel vvpelyasva gihvhslvse
      421 ytil
//
LOCUS       XP_053912435             424 aa            linear   VRT 09-MAR-2023
DEFINITION  tyrosine-protein kinase STYK1 [Cuculus canorus].
ACCESSION   XP_053912435
VERSION     XP_053912435.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056460.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..424
                     /product="tyrosine-protein kinase STYK1"
                     /calculated_mol_wt=47806
     Region          124..383
                     /region_name="PTKc"
                     /note="Catalytic domain of Protein Tyrosine Kinases;
                     cd00192"
                     /db_xref="CDD:270623"
     Site            order(124..126,130,147,149,196..199,202..203,253,257..258,
                     260,271,287..291,300,334)
                     /site_type="active"
                     /db_xref="CDD:270623"
     Site            order(125..126,130,147,149,196..199,202..203,257..258,260,
                     271)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270623"
     Site            order(253,257,287..291,300,334)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270623"
     Site            order(270..275,287..293)
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270623"
     CDS             1..424
                     /gene="STYK1"
                     /coded_by="XM_054056460.1:595..1869"
                     /db_xref="GeneID:104060624"
ORIGIN      
        1 mtrdakrftr mllecnsndk lcvvreyqte vivvpvilvg ffvivltvil wlhcrglrak
       61 qeqsssgeqv kdknqqesss aedhyiqlse asvesllnsa sltlkeleip reklsqgtlq
      121 lvkrgrygni yraqletgnp rktktvvlkt lqdmassqev enflgrikfh qnlghhenlv
      181 ellgccvdqf plymimedas lgdlltflwt crkdvmtmdg ipydlterqv ykvgqqvaaa
      241 layleqkklf hgdiaarnvl lhhnftaklc glglayetlt ygansvtqtv pvkwqapeql
      301 lkkspsikad iwsfgillye mitlgappyp evppsdilsy lqrqnimkqp sscqqamyni
      361 mkscwqwnat nrpspadliq slqramktsn dravlqvpel vvpelyasva gihvhslvse
      421 ytil
//
LOCUS       XP_053912436             424 aa            linear   VRT 09-MAR-2023
DEFINITION  tyrosine-protein kinase STYK1 [Cuculus canorus].
ACCESSION   XP_053912436
VERSION     XP_053912436.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056461.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..424
                     /product="tyrosine-protein kinase STYK1"
                     /calculated_mol_wt=47806
     Region          124..383
                     /region_name="PTKc"
                     /note="Catalytic domain of Protein Tyrosine Kinases;
                     cd00192"
                     /db_xref="CDD:270623"
     Site            order(124..126,130,147,149,196..199,202..203,253,257..258,
                     260,271,287..291,300,334)
                     /site_type="active"
                     /db_xref="CDD:270623"
     Site            order(125..126,130,147,149,196..199,202..203,257..258,260,
                     271)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270623"
     Site            order(253,257,287..291,300,334)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270623"
     Site            order(270..275,287..293)
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270623"
     CDS             1..424
                     /gene="STYK1"
                     /coded_by="XM_054056461.1:578..1852"
                     /db_xref="GeneID:104060624"
ORIGIN      
        1 mtrdakrftr mllecnsndk lcvvreyqte vivvpvilvg ffvivltvil wlhcrglrak
       61 qeqsssgeqv kdknqqesss aedhyiqlse asvesllnsa sltlkeleip reklsqgtlq
      121 lvkrgrygni yraqletgnp rktktvvlkt lqdmassqev enflgrikfh qnlghhenlv
      181 ellgccvdqf plymimedas lgdlltflwt crkdvmtmdg ipydlterqv ykvgqqvaaa
      241 layleqkklf hgdiaarnvl lhhnftaklc glglayetlt ygansvtqtv pvkwqapeql
      301 lkkspsikad iwsfgillye mitlgappyp evppsdilsy lqrqnimkqp sscqqamyni
      361 mkscwqwnat nrpspadliq slqramktsn dravlqvpel vvpelyasva gihvhslvse
      421 ytil
//
LOCUS       XP_053912438             414 aa            linear   VRT 09-MAR-2023
DEFINITION  lysophosphatidic acid phosphatase type 6 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912438
VERSION     XP_053912438.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056463.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..414
                     /product="lysophosphatidic acid phosphatase type 6 isoform
                     X1"
                     /calculated_mol_wt=46528
     Region          36..366
                     /region_name="HP_HAP_like"
                     /note="Histidine phosphatase domain found in histidine
                     acid phosphatases and phytases; contains a His residue
                     which is phosphorylated during the reaction; cd07061"
                     /db_xref="CDD:132717"
     Site            order(45..46,49,155,321..322)
                     /site_type="active"
                     /note="catalytic core [active]"
                     /db_xref="CDD:132717"
     CDS             1..414
                     /gene="ACP6"
                     /coded_by="XM_054056463.1:46..1290"
                     /db_xref="GeneID:104055987"
ORIGIN      
        1 mgwgtrlgvv gglavwaqrr raaaargagg errelelklv qvvfrhgart plrplpgaap
       61 vewhpslldv paetkfdyvv tdlnggpqpp slyeeqykki tfkggviagq lttvgmqqmf
      121 algqrlrrry veeanflspt fkpdevfvrs tnifrnlest rcllaglfqq qkegsvvivt
      181 deasseilyp nyhncqhlkc lsrqklknal qqpgisddlk tikekmgidd dnpvdfflll
      241 dniraeqvhn lpscpvlknf eqtverrsvd sllflledas revlkmsigl lfhtlqknit
      301 etvdpsspae karklilyas hdttlipllv algtfdrkwp pyaadvtlel yqhqqskewf
      361 vrmsyhgeeq vvkgcraglc pleeflealq qysvspeeys nlcsqmegnq pads
//
LOCUS       XP_053912439             299 aa            linear   VRT 09-MAR-2023
DEFINITION  lysophosphatidic acid phosphatase type 6 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912439
VERSION     XP_053912439.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056464.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..299
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..299
                     /product="lysophosphatidic acid phosphatase type 6 isoform
                     X2"
                     /calculated_mol_wt=34131
     Region          1..251
                     /region_name="HP_HAP_like"
                     /note="Histidine phosphatase domain found in histidine
                     acid phosphatases and phytases; contains a His residue
                     which is phosphorylated during the reaction; cd07061"
                     /db_xref="CDD:132717"
     CDS             1..299
                     /gene="ACP6"
                     /coded_by="XM_054056464.1:185..1084"
                     /db_xref="GeneID:104055987"
ORIGIN      
        1 mqqmfalgqr lrrryveean flsptfkpde vfvrstnifr nlestrclla glfqqqkegs
       61 vvivtdeass eilypnyhnc qhlkclsrqk lknalqqpgi sddlktikek mgidddnpvd
      121 ffllldnira eqvhnlpscp vlknfeqtve rrsvdsllfl ledasrevlk msigllfhtl
      181 qknitetvdp sspaekarkl ilyashdttl ipllvalgtf drkwppyaad vtlelyqhqq
      241 skewfvrmsy hgeeqvvkgc raglcpleef lealqqysvs peeysnlcsq megnqpads
//
LOCUS       XP_053912440             329 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM181B [Cuculus canorus].
ACCESSION   XP_053912440
VERSION     XP_053912440.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056465.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..329
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..329
                     /product="protein FAM181B"
                     /calculated_mol_wt=33473
     Region          49..>180
                     /region_name="FAM181"
                     /note="pfam15238"
                     /db_xref="CDD:434560"
     Region          <205..>310
                     /region_name="PHA03379"
                     /note="EBNA-3A; Provisional"
                     /db_xref="CDD:223066"
     CDS             1..329
                     /gene="FAM181B"
                     /coded_by="XM_054056465.1:92..1081"
                     /db_xref="GeneID:128850946"
ORIGIN      
        1 mavpaallsp hhllsfcfpa gailgyadle kgyegggagg daadfkeatr dllsfidsas
       61 sniklaldkp vkskrkvnhr kylqkqikrc tgiiapappa aspsssssss ppakppprre
      121 asqaasslqs kslaalfgsl qpgrgsagag eavpgggaag cprkvplrdr nlppsfftep
      181 alpppaakel ekgggdpsef fellspeyga llpeaaaphd afpaalgpeh glyevplpaa
      241 hhpllgglly peppwspagt cgpakkappe plrplypggg dpvpggggee pgghlaagfa
      301 pffpecplpp pqghydyggg fpraaypgl
//
LOCUS       XP_053912441             160 aa            linear   VRT 09-MAR-2023
DEFINITION  60S ribosomal protein L21 [Cuculus canorus].
ACCESSION   XP_053912441
VERSION     XP_053912441.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056466.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..160
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..160
                     /product="60S ribosomal protein L21"
                     /calculated_mol_wt=18460
     Region          1..160
                     /region_name="PTZ00189"
                     /note="60S ribosomal protein L21; Provisional"
                     /db_xref="CDD:240309"
     CDS             1..160
                     /gene="RPL21"
                     /coded_by="XM_054056466.1:146..628"
                     /db_xref="GeneID:104064160"
ORIGIN      
        1 mtntkgkrrg trymfsrpfr khgvvplaty mriykkgdiv dikgmgtvqk gmphkcyhgk
       61 tgrvynvtqh avgiivnkqv kgkilakrin vriehikhsk srdsflqrvk enekkkkeak
      121 ekgiwvqlkr qpappreahf vrtngkdpel lepipyefma
//
LOCUS       XP_009554888            1503 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor ionotropic, NMDA 2B isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009554888
VERSION     XP_009554888.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556593.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1503
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1503
                     /product="glutamate receptor ionotropic, NMDA 2B isoform
                     X1"
                     /calculated_mol_wt=168250
     Region          33..388
                     /region_name="PBP1_iGluR_NMDA_NR2"
                     /note="N-terminal leucine-isoleucine-valine-binding
                     protein (LIVBP)-like domain of the NR2 subunit of NMDA
                     receptor family; cd06378"
                     /db_xref="CDD:380601"
     Site            order(33,77..79,114,135,175,177,192,207..208,311..312)
                     /site_type="other"
                     /note="trimer interface [polypeptide binding]"
                     /db_xref="CDD:380601"
     Site            order(75..80,82..83,118..119,175,179,206,208,311..317,
                     321..323,334)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:380601"
     Region          405..805
                     /region_name="PBP2_iGluR_NMDA_Nr2"
                     /note="The ligand-binding domain of the NR2 subunit of
                     ionotropic NMDA (N-methyl-D-aspartate) glutamate
                     receptors, a member of the type 2 periplasmic binding fold
                     protein superfamily; cd13718"
                     /db_xref="CDD:270436"
     Site            order(514..517,519,521..523,669,691..692,696,734,759..761,
                     764,770,786..789,792)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:270436"
     Site            order(514..516,521,691..693,733..734)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:270436"
     Region          842..1503
                     /region_name="NMDAR2_C"
                     /note="N-methyl D-aspartate receptor 2B3 C-terminus;
                     pfam10565"
                     /db_xref="CDD:463148"
     CDS             1..1503
                     /gene="GRIN2B"
                     /coded_by="XM_009556593.2:708..5219"
                     /db_xref="GeneID:104055470"
ORIGIN      
        1 mrprvecysp kfwlvlavla ttgsgahaqk shpsigiavi lvgtsdevai kdahekddfh
       61 hlsvvprvel vamnetdpks iitricdlms drkiqgvvfa ddtdqeaiaq ildfisaqtl
      121 tpilgihggs smimadkdes smffqfgpsi eqqasvmlni meeydwyifs ivttyfpgyq
      181 dfvnkirsti ehsfvgwele evllldmsld dgdskiqnql kklqspvill yctkeeatyi
      241 fevansvglt gygytwivps lvagdtdtvp sefptglisv sydewdyglp arvrdgiaii
      301 ttaasdmlse hsfipepkss cyntqekriy qsnmlnryli nvtfegrnls fsedgyqmhp
      361 klviilltke rkwervgkwk ekklqmkyyv wprfelypds eereddhlsi vtleeapfvi
      421 venvdplsgt cmrntvpcqk rivtenktde epdymkkcck gfcidilkki sksvkftydl
      481 ylvtngkhgk kingtwngmi gevvtkraym avgsltinee rsevvdfsvp fietgisvmv
      541 srsngtvsps aflepfsadv wvmmfvmlli isavavfvfe yfspvgynrc ladgrepggp
      601 sftigkaiwl lwglvfnnsv pvqnpkgtts kimvsvwaff aviflasyta nlaafmiqee
      661 yvdqvsglsd kkfqkpndfs ppfrfgtvpn gsternirnn ypemhsymvk fnqrgvddal
      721 fslktgklda fiydaavlny magrdegckl vtigsgkvfa stgygiaiqk dsgwkrqvdl
      781 ailqlfgdge meelealwlt gichneknev mssqldidnm agvfymlgaa malslitfic
      841 ehlfywqfrh cfmgvcsgkp gvvfsisrgi yscihgvaie erqsamnspt atmnnthsni
      901 lrllrtaknm anlsgvngsp qsaldfirre ssvydisehr rsfthsdcks ynnppceenl
      961 fsdyisever tfgnlqlkds nvyqdhyhhh hrphsigsts sidglydcdn ppfnaqsrsi
     1021 gkkpldlglp pakhsqlgdl ygkfsfksdr yggsgahddl irsdvsdist htvtygnieg
     1081 naakrrkqqy kdslkkrpas aksrrefdei elayrrrppr spdhkryfrd keglrdfyld
     1141 qfrakensph wehvdltdiy kergdefkrd aggggsgsct nrahhkhgsg efggsnehkh
     1201 ggvsgvpapw eknltnldwe drpganfcrs cpsklhnytp svvgqnstrq acirceackk
     1261 agnlydised nslqeldqpp apvpvatsat ssskypqsps nsaskvqkkn rnklrrqhsy
     1321 dtfvdlqkdd salaprsvsl kdkgrflegs pyahmfempa settfannks svpatsyhhh
     1381 nnpgssggym lskslypdrv tqnpfiptfg ddqcllhgsk syffrqpmva ggpkarpdfr
     1441 aivttnkpvv salhgavpar fqkdicignq snpcvpnnkn prafngssng hvyeklssie
     1501 sdv
//
LOCUS       XP_053912442            1503 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor ionotropic, NMDA 2B isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912442
VERSION     XP_053912442.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056467.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1503
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1503
                     /product="glutamate receptor ionotropic, NMDA 2B isoform
                     X1"
                     /calculated_mol_wt=168250
     Region          33..388
                     /region_name="PBP1_iGluR_NMDA_NR2"
                     /note="N-terminal leucine-isoleucine-valine-binding
                     protein (LIVBP)-like domain of the NR2 subunit of NMDA
                     receptor family; cd06378"
                     /db_xref="CDD:380601"
     Site            order(33,77..79,114,135,175,177,192,207..208,311..312)
                     /site_type="other"
                     /note="trimer interface [polypeptide binding]"
                     /db_xref="CDD:380601"
     Site            order(75..80,82..83,118..119,175,179,206,208,311..317,
                     321..323,334)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:380601"
     Region          405..805
                     /region_name="PBP2_iGluR_NMDA_Nr2"
                     /note="The ligand-binding domain of the NR2 subunit of
                     ionotropic NMDA (N-methyl-D-aspartate) glutamate
                     receptors, a member of the type 2 periplasmic binding fold
                     protein superfamily; cd13718"
                     /db_xref="CDD:270436"
     Site            order(514..517,519,521..523,669,691..692,696,734,759..761,
                     764,770,786..789,792)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:270436"
     Site            order(514..516,521,691..693,733..734)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:270436"
     Region          842..1503
                     /region_name="NMDAR2_C"
                     /note="N-methyl D-aspartate receptor 2B3 C-terminus;
                     pfam10565"
                     /db_xref="CDD:463148"
     CDS             1..1503
                     /gene="GRIN2B"
                     /coded_by="XM_054056467.1:68..4579"
                     /db_xref="GeneID:104055470"
ORIGIN      
        1 mrprvecysp kfwlvlavla ttgsgahaqk shpsigiavi lvgtsdevai kdahekddfh
       61 hlsvvprvel vamnetdpks iitricdlms drkiqgvvfa ddtdqeaiaq ildfisaqtl
      121 tpilgihggs smimadkdes smffqfgpsi eqqasvmlni meeydwyifs ivttyfpgyq
      181 dfvnkirsti ehsfvgwele evllldmsld dgdskiqnql kklqspvill yctkeeatyi
      241 fevansvglt gygytwivps lvagdtdtvp sefptglisv sydewdyglp arvrdgiaii
      301 ttaasdmlse hsfipepkss cyntqekriy qsnmlnryli nvtfegrnls fsedgyqmhp
      361 klviilltke rkwervgkwk ekklqmkyyv wprfelypds eereddhlsi vtleeapfvi
      421 venvdplsgt cmrntvpcqk rivtenktde epdymkkcck gfcidilkki sksvkftydl
      481 ylvtngkhgk kingtwngmi gevvtkraym avgsltinee rsevvdfsvp fietgisvmv
      541 srsngtvsps aflepfsadv wvmmfvmlli isavavfvfe yfspvgynrc ladgrepggp
      601 sftigkaiwl lwglvfnnsv pvqnpkgtts kimvsvwaff aviflasyta nlaafmiqee
      661 yvdqvsglsd kkfqkpndfs ppfrfgtvpn gsternirnn ypemhsymvk fnqrgvddal
      721 fslktgklda fiydaavlny magrdegckl vtigsgkvfa stgygiaiqk dsgwkrqvdl
      781 ailqlfgdge meelealwlt gichneknev mssqldidnm agvfymlgaa malslitfic
      841 ehlfywqfrh cfmgvcsgkp gvvfsisrgi yscihgvaie erqsamnspt atmnnthsni
      901 lrllrtaknm anlsgvngsp qsaldfirre ssvydisehr rsfthsdcks ynnppceenl
      961 fsdyisever tfgnlqlkds nvyqdhyhhh hrphsigsts sidglydcdn ppfnaqsrsi
     1021 gkkpldlglp pakhsqlgdl ygkfsfksdr yggsgahddl irsdvsdist htvtygnieg
     1081 naakrrkqqy kdslkkrpas aksrrefdei elayrrrppr spdhkryfrd keglrdfyld
     1141 qfrakensph wehvdltdiy kergdefkrd aggggsgsct nrahhkhgsg efggsnehkh
     1201 ggvsgvpapw eknltnldwe drpganfcrs cpsklhnytp svvgqnstrq acirceackk
     1261 agnlydised nslqeldqpp apvpvatsat ssskypqsps nsaskvqkkn rnklrrqhsy
     1321 dtfvdlqkdd salaprsvsl kdkgrflegs pyahmfempa settfannks svpatsyhhh
     1381 nnpgssggym lskslypdrv tqnpfiptfg ddqcllhgsk syffrqpmva ggpkarpdfr
     1441 aivttnkpvv salhgavpar fqkdicignq snpcvpnnkn prafngssng hvyeklssie
     1501 sdv
//
LOCUS       XP_053912443             337 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor ionotropic, NMDA 2B isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912443
VERSION     XP_053912443.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056468.1
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..337
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..337
                     /product="glutamate receptor ionotropic, NMDA 2B isoform
                     X2"
                     /calculated_mol_wt=37492
     Region          33..337
                     /region_name="PBP1_iGluR_NMDA_NR2"
                     /note="N-terminal leucine-isoleucine-valine-binding
                     protein (LIVBP)-like domain of the NR2 subunit of NMDA
                     receptor family; cd06378"
                     /db_xref="CDD:380601"
     Site            order(33,77..79,114,135,175,177,192,207..208,311..312)
                     /site_type="other"
                     /note="trimer interface [polypeptide binding]"
                     /db_xref="CDD:380601"
     Site            order(75..80,82..83,118..119,175,179,206,208,311..317,
                     321..323,334)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:380601"
     CDS             1..337
                     /gene="GRIN2B"
                     /coded_by="XM_054056468.1:708..1721"
                     /db_xref="GeneID:104055470"
ORIGIN      
        1 mrprvecysp kfwlvlavla ttgsgahaqk shpsigiavi lvgtsdevai kdahekddfh
       61 hlsvvprvel vamnetdpks iitricdlms drkiqgvvfa ddtdqeaiaq ildfisaqtl
      121 tpilgihggs smimadkdes smffqfgpsi eqqasvmlni meeydwyifs ivttyfpgyq
      181 dfvnkirsti ehsfvgwele evllldmsld dgdskiqnql kklqspvill yctkeeatyi
      241 fevansvglt gygytwivps lvagdtdtvp sefptglisv sydewdyglp arvrdgiaii
      301 ttaasdmlse hsfipepkss cyntqekriy qsnmlnr
//
LOCUS       XP_053912445             304 aa            linear   VRT 09-MAR-2023
DEFINITION  PILR alpha-associated neural protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053912445
VERSION     XP_053912445.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056470.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..304
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..304
                     /product="PILR alpha-associated neural protein isoform X1"
                     /calculated_mol_wt=33155
     CDS             1..304
                     /gene="PIANP"
                     /coded_by="XM_054056470.1:464..1378"
                     /db_xref="GeneID:104064371"
ORIGIN      
        1 mepsacrmpp llscihslql whlillvsav pppsvwslrs rgpaatrplc arrspsasrp
       61 iciwdrtslp erdsrfaspr qralaprgtd lrhvvrlrrq aagarpatps gfedgmpssq
      121 ypwaivwgpt vsdedggdtn sanpgfpplg ytfvsphgma taqpnshsll hnaglnlret
      181 patlrpflfg prgegvdpql yvtitisiii vlvatgiifk fcwdrnqkrr rhsgqqssgr
      241 qqesqqpltd lsptavsilg pysdsltptp eaeesrqgqe cveklgghgk tmafqlnrip
      301 lvnl
//
LOCUS       XP_053912446             304 aa            linear   VRT 09-MAR-2023
DEFINITION  PILR alpha-associated neural protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053912446
VERSION     XP_053912446.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056471.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..304
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..304
                     /product="PILR alpha-associated neural protein isoform X1"
                     /calculated_mol_wt=33155
     CDS             1..304
                     /gene="PIANP"
                     /coded_by="XM_054056471.1:434..1348"
                     /db_xref="GeneID:104064371"
ORIGIN      
        1 mepsacrmpp llscihslql whlillvsav pppsvwslrs rgpaatrplc arrspsasrp
       61 iciwdrtslp erdsrfaspr qralaprgtd lrhvvrlrrq aagarpatps gfedgmpssq
      121 ypwaivwgpt vsdedggdtn sanpgfpplg ytfvsphgma taqpnshsll hnaglnlret
      181 patlrpflfg prgegvdpql yvtitisiii vlvatgiifk fcwdrnqkrr rhsgqqssgr
      241 qqesqqpltd lsptavsilg pysdsltptp eaeesrqgqe cveklgghgk tmafqlnrip
      301 lvnl
//
LOCUS       XP_053912447             304 aa            linear   VRT 09-MAR-2023
DEFINITION  PILR alpha-associated neural protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053912447
VERSION     XP_053912447.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056472.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..304
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..304
                     /product="PILR alpha-associated neural protein isoform X1"
                     /calculated_mol_wt=33155
     CDS             1..304
                     /gene="PIANP"
                     /coded_by="XM_054056472.1:311..1225"
                     /db_xref="GeneID:104064371"
ORIGIN      
        1 mepsacrmpp llscihslql whlillvsav pppsvwslrs rgpaatrplc arrspsasrp
       61 iciwdrtslp erdsrfaspr qralaprgtd lrhvvrlrrq aagarpatps gfedgmpssq
      121 ypwaivwgpt vsdedggdtn sanpgfpplg ytfvsphgma taqpnshsll hnaglnlret
      181 patlrpflfg prgegvdpql yvtitisiii vlvatgiifk fcwdrnqkrr rhsgqqssgr
      241 qqesqqpltd lsptavsilg pysdsltptp eaeesrqgqe cveklgghgk tmafqlnrip
      301 lvnl
//
LOCUS       XP_053912448             304 aa            linear   VRT 09-MAR-2023
DEFINITION  PILR alpha-associated neural protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053912448
VERSION     XP_053912448.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056473.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..304
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..304
                     /product="PILR alpha-associated neural protein isoform X1"
                     /calculated_mol_wt=33155
     CDS             1..304
                     /gene="PIANP"
                     /coded_by="XM_054056473.1:479..1393"
                     /db_xref="GeneID:104064371"
ORIGIN      
        1 mepsacrmpp llscihslql whlillvsav pppsvwslrs rgpaatrplc arrspsasrp
       61 iciwdrtslp erdsrfaspr qralaprgtd lrhvvrlrrq aagarpatps gfedgmpssq
      121 ypwaivwgpt vsdedggdtn sanpgfpplg ytfvsphgma taqpnshsll hnaglnlret
      181 patlrpflfg prgegvdpql yvtitisiii vlvatgiifk fcwdrnqkrr rhsgqqssgr
      241 qqesqqpltd lsptavsilg pysdsltptp eaeesrqgqe cveklgghgk tmafqlnrip
      301 lvnl
//
LOCUS       XP_053912449             304 aa            linear   VRT 09-MAR-2023
DEFINITION  PILR alpha-associated neural protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053912449
VERSION     XP_053912449.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056474.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..304
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..304
                     /product="PILR alpha-associated neural protein isoform X1"
                     /calculated_mol_wt=33155
     CDS             1..304
                     /gene="PIANP"
                     /coded_by="XM_054056474.1:507..1421"
                     /db_xref="GeneID:104064371"
ORIGIN      
        1 mepsacrmpp llscihslql whlillvsav pppsvwslrs rgpaatrplc arrspsasrp
       61 iciwdrtslp erdsrfaspr qralaprgtd lrhvvrlrrq aagarpatps gfedgmpssq
      121 ypwaivwgpt vsdedggdtn sanpgfpplg ytfvsphgma taqpnshsll hnaglnlret
      181 patlrpflfg prgegvdpql yvtitisiii vlvatgiifk fcwdrnqkrr rhsgqqssgr
      241 qqesqqpltd lsptavsilg pysdsltptp eaeesrqgqe cveklgghgk tmafqlnrip
      301 lvnl
//
LOCUS       XP_053912450             303 aa            linear   VRT 09-MAR-2023
DEFINITION  PILR alpha-associated neural protein isoform X2 [Cuculus canorus].
ACCESSION   XP_053912450
VERSION     XP_053912450.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056475.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..303
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..303
                     /product="PILR alpha-associated neural protein isoform X2"
                     /calculated_mol_wt=33082
     CDS             1..303
                     /gene="PIANP"
                     /coded_by="XM_054056475.1:464..1375"
                     /db_xref="GeneID:104064371"
ORIGIN      
        1 mepsawmppl lscihslqlw hlillvsavp ppsvwslrsr gpaatrplca rrspsasrpi
       61 ciwdrtslpe rdsrfasprq ralaprgtdl rhvvrlrrqa agarpatpsg fedgmpssqy
      121 pwaivwgptv sdedggdtns anpgfpplgy tfvsphgmat aqpnshsllh naglnlretp
      181 atlrpflfgp rgegvdpqly vtitisiiiv lvatgiifkf cwdrnqkrrr hsgqqssgrq
      241 qesqqpltdl sptavsilgp ysdsltptpe aeesrqgqec veklgghgkt mafqlnripl
      301 vnl
//
LOCUS       XP_053912451             888 aa            linear   VRT 09-MAR-2023
DEFINITION  sucrase-isomaltase, intestinal [Cuculus canorus].
ACCESSION   XP_053912451
VERSION     XP_053912451.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056476.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..888
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..888
                     /product="sucrase-isomaltase, intestinal"
                     /calculated_mol_wt=100402
     Region          29..73
                     /region_name="Trefoil"
                     /note="Trefoil (P-type) domain; pfam00088"
                     /db_xref="CDD:459666"
     Site            order(45,68..69)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:238059"
     Site            order(60,68)
                     /site_type="active"
                     /note="putative binding specificity loop [active]"
                     /db_xref="CDD:238059"
     Region          92..200
                     /region_name="NtCtMGAM_N"
                     /note="N-terminal barrel of NtMGAM and CtMGAM,
                     maltase-glucoamylase; pfam16863"
                     /db_xref="CDD:465286"
     Region          199..306
                     /region_name="GH31_N"
                     /note="N-terminal domain of glycosyl hydrolase family 31
                     (GH31); cd14752"
                     /db_xref="CDD:270212"
     Site            229
                     /site_type="active"
                     /db_xref="CDD:270212"
     Region          306..666
                     /region_name="GH31_MGAM_SI_GAA"
                     /note="maltase-glucoamylase, sucrase-isomaltase, lysosomal
                     acid alpha-glucosidase; cd06602"
                     /db_xref="CDD:269888"
     Site            order(323,351..352,388,429,465,467..468,549,562,565,598,
                     623)
                     /site_type="active"
                     /db_xref="CDD:269888"
     CDS             1..888
                     /gene="LOC104056080"
                     /coded_by="XM_054056476.1:104..2770"
                     /db_xref="GeneID:104056080"
ORIGIN      
        1 meriktlcfl aavltaldgc vgsgqdgqcp gavavqkrvd chpqpgasqe aceargciwc
       61 atdranapwc ffpednpygy slggnterta kgwrvtlnkr qalslfgddi spvvlevefq
      121 tkdrlrfrly dpnrerfevp lkisspgvta deanydvefa ddsshfrikr kstgtvlwds
      181 plvdlffsnq ylqvtttvps tsvygfgehe htsfkhnmdf vtygmfsrdq aptpfanlyg
      241 vhpfymcvea dsnahgvlll nsnaqdvsls pnpsltfrti ggifdfyvfl gptpenviqq
      301 yteaigrphm paywslgfql srwgygsidv lkktvdrmhy ydipydvqhl didymerrld
      361 ftydkvnyag lpeylqqlkk egmhnvvild pfitkdeepg tyrpydlgqe mgvwvnnsdg
      421 vtpaigkawp pgdsvfpdyt nprtvewwtq mclefkdvld ydgiwidmne psnflrgqyp
      481 gcaandinnp pyipnisdrs laqktlcpds rtylgehynt hslfgwsqte ptfhvvqqat
      541 gkrafvlsrs tfvgsgkygg hwlgdnfsqw kdmhysiigi lefnlfgipy igadicgfny
      601 nttyelclrw mqlgsfypfs rnhnaegnse qdpavfgeef akisratlri rysllpylyt
      661 lffeshvygn tvvrslmqef tsdqqthgid taflwgpafm iapvlqegar svdvyfpeaq
      721 wfdyytghkl psawsknyat vaaplskipl firggyilpe qapattttks rlnpfgliia
      781 ldeqeeasgs lfwddgdsid tiekeqyfla kytysksslk teilkngyrg vdtlkynkit
      841 ilglkmrpht valngkairg dassyessgk ltiwisvplt qelsitlh
//
LOCUS       XP_053912452             578 aa            linear   VRT 09-MAR-2023
DEFINITION  copine-8 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912452
VERSION     XP_053912452.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056477.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..578
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..578
                     /product="copine-8 isoform X1"
                     /calculated_mol_wt=64528
     Region          38..159
                     /region_name="C2A_Copine"
                     /note="C2 domain first repeat in Copine; cd04048"
                     /db_xref="CDD:176013"
     Site            order(53,59,113,115,125)
                     /site_type="other"
                     /note="putative Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176013"
     Region          172..283
                     /region_name="C2B_Copine"
                     /note="C2 domain second repeat in Copine; cd04047"
                     /db_xref="CDD:176012"
     Site            order(187,193,249,251,257)
                     /site_type="other"
                     /note="putative Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176012"
     Region          293..549
                     /region_name="vWA_copine_like"
                     /note="VWA Copine: Copines are phospholipid-binding
                     proteins originally identified in paramecium. They are
                     found in human and orthologues have been found in C.
                     elegans and Arabidopsis Thaliana. None have been found in
                     D. Melanogaster or S. Cereviciae; cd01459"
                     /db_xref="CDD:238736"
     Site            order(329,331,333,427,457)
                     /site_type="other"
                     /note="metal ion-dependent adhesion site (MIDAS)"
                     /db_xref="CDD:238736"
     CDS             1..578
                     /gene="CPNE8"
                     /coded_by="XM_054056477.1:436..2172"
                     /db_xref="GeneID:104056079"
ORIGIN      
        1 mfglekpagp qklgrsggfp nmasvgdfnv lsssipatkv elsvscrnll drdtfsksdp
       61 icvlytqaig nkewrefgrt evidntlnpd fvrkfimdyf feerenlrfd fydvdskspn
      121 lskhdflgqm fctlgeivgs qgsrlektiv gipgkkcgtv ivtaeelgcc rdsvlmqfca
      181 nkldkkdffg ksdpflvfhr snedgsftic hktevvkntl npvwqafkis vralcngdyd
      241 rtikvevydw drdgshdfig efttsyrels rgqsqfnvye vinpkkkgkk kkyvnsgtvt
      301 llsflietev sfldyikggt qinftvaidf tasngnpsqp tslhymnpyq lnaygmalra
      361 vgeiiqdyds dkmfpalgfg arlppdgrvs hefalngnpq npychgidgv meayyrslks
      421 vqlygptnfa pvinhvarya asvkdgsqyf vlliitdgvi sdmaqtkesi vnasklpmsi
      481 iivgvgpaef dameeldgdv vrissrgkfa erdivqfvpf rdyidrsgnh vlsmarlakd
      541 vlaeipeqfl symrvrgikp spapppytpp ihvlqtqi
//
LOCUS       XP_053912454             524 aa            linear   VRT 09-MAR-2023
DEFINITION  copine-8 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912454
VERSION     XP_053912454.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056479.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..524
                     /product="copine-8 isoform X2"
                     /calculated_mol_wt=58324
     Region          38..159
                     /region_name="C2A_Copine"
                     /note="C2 domain first repeat in Copine; cd04048"
                     /db_xref="CDD:176013"
     Site            order(53,59,113,115,125)
                     /site_type="other"
                     /note="putative Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176013"
     Region          172..283
                     /region_name="C2B_Copine"
                     /note="C2 domain second repeat in Copine; cd04047"
                     /db_xref="CDD:176012"
     Site            order(187,193,249,251,257)
                     /site_type="other"
                     /note="putative Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176012"
     Region          293..523
                     /region_name="vWA_copine_like"
                     /note="VWA Copine: Copines are phospholipid-binding
                     proteins originally identified in paramecium. They are
                     found in human and orthologues have been found in C.
                     elegans and Arabidopsis Thaliana. None have been found in
                     D. Melanogaster or S. Cereviciae; cd01459"
                     /db_xref="CDD:238736"
     Site            order(329,331,333,427,457)
                     /site_type="other"
                     /note="metal ion-dependent adhesion site (MIDAS)"
                     /db_xref="CDD:238736"
     CDS             1..524
                     /gene="CPNE8"
                     /coded_by="XM_054056479.1:438..2012"
                     /db_xref="GeneID:104056079"
ORIGIN      
        1 mfglekpagp qklgrsggfp nmasvgdfnv lsssipatkv elsvscrnll drdtfsksdp
       61 icvlytqaig nkewrefgrt evidntlnpd fvrkfimdyf feerenlrfd fydvdskspn
      121 lskhdflgqm fctlgeivgs qgsrlektiv gipgkkcgtv ivtaeelgcc rdsvlmqfca
      181 nkldkkdffg ksdpflvfhr snedgsftic hktevvkntl npvwqafkis vralcngdyd
      241 rtikvevydw drdgshdfig efttsyrels rgqsqfnvye vinpkkkgkk kkyvnsgtvt
      301 llsflietev sfldyikggt qinftvaidf tasngnpsqp tslhymnpyq lnaygmalra
      361 vgeiiqdyds dkmfpalgfg arlppdgrvs hefalngnpq npychgidgv meayyrslks
      421 vqlygptnfa pvinhvarya asvkdgsqyf vlliitdgvi sdmaqtkesi vnasklpmsi
      481 iivgvgpaef dameeldgdv vrissrgkfa erdivqvpsk qtvl
//
LOCUS       XP_053912455             499 aa            linear   VRT 09-MAR-2023
DEFINITION  copine-8 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912455
VERSION     XP_053912455.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056480.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..499
                     /product="copine-8 isoform X3"
                     /calculated_mol_wt=55557
     Region          38..159
                     /region_name="C2A_Copine"
                     /note="C2 domain first repeat in Copine; cd04048"
                     /db_xref="CDD:176013"
     Site            order(53,59,113,115,125)
                     /site_type="other"
                     /note="putative Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176013"
     Region          172..283
                     /region_name="C2B_Copine"
                     /note="C2 domain second repeat in Copine; cd04047"
                     /db_xref="CDD:176012"
     Site            order(187,193,249,251,257)
                     /site_type="other"
                     /note="putative Ca2+ binding site [ion binding]"
                     /db_xref="CDD:176012"
     Region          293..>491
                     /region_name="vWFA"
                     /note="Von Willebrand factor type A (vWA) domain was
                     originally found in the blood coagulation protein von
                     Willebrand factor (vWF). Typically, the vWA domain is made
                     up of approximately 200 amino acid residues folded into a
                     classic a/b para-rossmann type of...; cl00057"
                     /db_xref="CDD:469594"
     Site            order(335,427,457)
                     /site_type="other"
                     /note="metal ion-dependent adhesion site (MIDAS)"
                     /db_xref="CDD:238736"
     CDS             1..499
                     /gene="CPNE8"
                     /coded_by="XM_054056480.1:437..1936"
                     /db_xref="GeneID:104056079"
ORIGIN      
        1 mfglekpagp qklgrsggfp nmasvgdfnv lsssipatkv elsvscrnll drdtfsksdp
       61 icvlytqaig nkewrefgrt evidntlnpd fvrkfimdyf feerenlrfd fydvdskspn
      121 lskhdflgqm fctlgeivgs qgsrlektiv gipgkkcgtv ivtaeelgcc rdsvlmqfca
      181 nkldkkdffg ksdpflvfhr snedgsftic hktevvkntl npvwqafkis vralcngdyd
      241 rtikvevydw drdgshdfig efttsyrels rgqsqfnvye vinpkkkgkk kkyvnsgtvt
      301 llsflietev sfldyikggt qinftvaidf tasngnpsqp tslhymnpyq lnaygmalra
      361 vgeiiqdyds dkmfpalgfg arlppdgrvs hefalngnpq npychgidgv meayyrslks
      421 vqlygptnfa pvinhvarya asvkdgsqyf vlliitdgvi sdmaqtkesi vnasklpmsi
      481 iivgvgpaef dvcaiprlh
//
LOCUS       XP_053912456             199 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related and estrogen-regulated growth inhibitor [Cuculus
            canorus].
ACCESSION   XP_053912456
VERSION     XP_053912456.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056481.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..199
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..199
                     /product="ras-related and estrogen-regulated growth
                     inhibitor"
                     /calculated_mol_wt=22333
     Region          8..169
                     /region_name="RERG_RasL11_like"
                     /note="Ras-related and Estrogen-Regulated Growth inhibitor
                     (RERG) and Ras-like 11 (RasL11)-like families; cd04146"
                     /db_xref="CDD:206713"
     Site            13..20
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206713"
     Site            order(14..15,62..63)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206713"
     Site            order(16..21,34,118..119,121,148..150)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206713"
     Site            order(20..21,35,37,43..44,57..58,60,62..63,150)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206713"
     Site            order(36..39,42..44)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206713"
     Site            order(36..37,41..44)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206713"
     Site            38
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206713"
     Site            60..63
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206713"
     Site            order(62..63,68..79)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206713"
     Site            118..121
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206713"
     Site            148..150
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206713"
     CDS             1..199
                     /gene="RERG"
                     /coded_by="XM_054056481.1:244..843"
                     /db_xref="GeneID:104067840"
ORIGIN      
        1 maksaevkla ifgragvgks alvvrfltkr fiweydptle styrhqatid devvsmeild
       61 tagqedaiqk eghvrwgegf vlvyditdrg sfeevlplkn lldevkkpkn vtlilvgnka
      121 dldhsrqvst eegeklatel acafyecsac tgegnimeaf yelcrevrrr kmvqgktrrr
      181 sstthvkqai nkmltkiss
//
LOCUS       XP_053912457             103 aa            linear   VRT 09-MAR-2023
DEFINITION  matrix Gla protein [Cuculus canorus].
ACCESSION   XP_053912457
VERSION     XP_053912457.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056482.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..103
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..103
                     /product="matrix Gla protein"
                     /calculated_mol_wt=12321
     Region          33..97
                     /region_name="Gla"
                     /note="Vitamin K-dependent
                     carboxylation/gamma-carboxyglutamic (GLA) domain; cl02449"
                     /db_xref="CDD:470582"
     CDS             1..103
                     /gene="MGP"
                     /coded_by="XM_054056482.1:246..557"
                     /db_xref="GeneID:104068647"
ORIGIN      
        1 mrafiilall avlvmvatcy eshesmeshe ylnpflnrrr andfiqaerr leaisqerir
       61 ernkapqerq remcenyypc eayafrhgya aayrhyfgkr rtk
//
LOCUS       XP_009569845             103 aa            linear   VRT 09-MAR-2023
DEFINITION  matrix Gla protein [Cuculus canorus].
ACCESSION   XP_009569845
VERSION     XP_009569845.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009571550.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..103
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..103
                     /product="matrix Gla protein"
                     /calculated_mol_wt=12321
     Region          33..97
                     /region_name="Gla"
                     /note="Vitamin K-dependent
                     carboxylation/gamma-carboxyglutamic (GLA) domain; cl02449"
                     /db_xref="CDD:470582"
     CDS             1..103
                     /gene="MGP"
                     /coded_by="XM_009571550.2:187..498"
                     /db_xref="GeneID:104068647"
ORIGIN      
        1 mrafiilall avlvmvatcy eshesmeshe ylnpflnrrr andfiqaerr leaisqerir
       61 ernkapqerq remcenyypc eayafrhgya aayrhyfgkr rtk
//
LOCUS       XP_009559222             336 aa            linear   VRT 09-MAR-2023
DEFINITION  heat shock factor 2-binding protein isoform X1 [Cuculus canorus].
ACCESSION   XP_009559222
VERSION     XP_009559222.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560927.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009559222.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..336
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..336
                     /product="heat shock factor 2-binding protein isoform X1"
                     /calculated_mol_wt=38101
     Region          <12..>118
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..336
                     /gene="HSF2BP"
                     /coded_by="XM_009560927.2:23..1033"
                     /db_xref="GeneID:104059277"
ORIGIN      
        1 mrprhrtagd aqkaeteeef vkirrrdler lttevmqlrd flpkilngdi lgtfqkldai
       61 esnmekkeee ieqlnmdceh frarletaqa dcmrekkekl dlrqqlneak qqllqqaeyc
      121 temgaavctl lwgvssneea vksilggska vkfftitaqt mesfvkslse dmkqqdldsd
      181 enqfvlalag ivtnvaalac greflvsssr elldtmmhll ghmkpglctk fkvlmlmsly
      241 nvsinlkglk yisespgfip llwwllndpd tevcvhalrl lqsvilepev laksasemrd
      301 tlpfqriial srsrnadlqa lakelledlk ileyea
//
LOCUS       XP_053912459             335 aa            linear   VRT 09-MAR-2023
DEFINITION  heat shock factor 2-binding protein isoform X2 [Cuculus canorus].
ACCESSION   XP_053912459
VERSION     XP_053912459.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056484.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..335
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..335
                     /product="heat shock factor 2-binding protein isoform X2"
                     /calculated_mol_wt=37973
     Region          <11..>117
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     CDS             1..335
                     /gene="HSF2BP"
                     /coded_by="XM_054056484.1:59..1066"
                     /db_xref="GeneID:104059277"
ORIGIN      
        1 mrprhrtagd aqaeteeefv kirrrdlerl ttevmqlrdf lpkilngdil gtfqkldaie
       61 snmekkeeei eqlnmdcehf rarletaqad cmrekkekld lrqqlneakq qllqqaeyct
      121 emgaavctll wgvssneeav ksilggskav kfftitaqtm esfvkslsed mkqqdldsde
      181 nqfvlalagi vtnvaalacg reflvsssre lldtmmhllg hmkpglctkf kvlmlmslyn
      241 vsinlkglky isespgfipl lwwllndpdt evcvhalrll qsvilepevl aksasemrdt
      301 lpfqriials rsrnadlqal akelledlki leyea
//
LOCUS       XP_053912460             324 aa            linear   VRT 09-MAR-2023
DEFINITION  heat shock factor 2-binding protein isoform X3 [Cuculus canorus].
ACCESSION   XP_053912460
VERSION     XP_053912460.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056485.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..324
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..324
                     /product="heat shock factor 2-binding protein isoform X3"
                     /calculated_mol_wt=36727
     CDS             1..324
                     /gene="HSF2BP"
                     /coded_by="XM_054056485.1:1044..2018"
                     /db_xref="GeneID:104059277"
ORIGIN      
        1 maeteeefvk irrrdlerlt tevmqlrdfl pkilngdilg tfqkldaies nmekkeeeie
       61 qlnmdcehfr arletaqadc mrekkekldl rqqlneakqq llqqaeycte mgaavctllw
      121 gvssneeavk silggskavk fftitaqtme sfvkslsedm kqqdldsden qfvlalagiv
      181 tnvaalacgr eflvsssrel ldtmmhllgh mkpglctkfk vlmlmslynv sinlkglkyi
      241 sespgfipll wwllndpdte vcvhalrllq svilepevla ksasemrdtl pfqriialsr
      301 srnadlqala kelledlkil eyea
//
LOCUS       XP_053912461             273 aa            linear   VRT 09-MAR-2023
DEFINITION  heat shock factor 2-binding protein isoform X4 [Cuculus canorus].
ACCESSION   XP_053912461
VERSION     XP_053912461.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056486.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..273
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..273
                     /product="heat shock factor 2-binding protein isoform X4"
                     /calculated_mol_wt=30721
     CDS             1..273
                     /gene="HSF2BP"
                     /coded_by="XM_054056486.1:5637..6458"
                     /db_xref="GeneID:104059277"
ORIGIN      
        1 mekkeeeieq lnmdcehfra rletaqadcm rekkekldlr qqlneakqql lqqaeyctem
       61 gaavctllwg vssneeavks ilggskavkf ftitaqtmes fvkslsedmk qqdldsdenq
      121 fvlalagivt nvaalacgre flvsssrell dtmmhllghm kpglctkfkv lmlmslynvs
      181 inlkglkyis espgfipllw wllndpdtev cvhalrllqs vilepevlak sasemrdtlp
      241 fqriialsrs rnadlqalak elledlkile yea
//
LOCUS       XP_053912462             273 aa            linear   VRT 09-MAR-2023
DEFINITION  heat shock factor 2-binding protein isoform X4 [Cuculus canorus].
ACCESSION   XP_053912462
VERSION     XP_053912462.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056487.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..273
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..273
                     /product="heat shock factor 2-binding protein isoform X4"
                     /calculated_mol_wt=30721
     CDS             1..273
                     /gene="HSF2BP"
                     /coded_by="XM_054056487.1:3773..4594"
                     /db_xref="GeneID:104059277"
ORIGIN      
        1 mekkeeeieq lnmdcehfra rletaqadcm rekkekldlr qqlneakqql lqqaeyctem
       61 gaavctllwg vssneeavks ilggskavkf ftitaqtmes fvkslsedmk qqdldsdenq
      121 fvlalagivt nvaalacgre flvsssrell dtmmhllghm kpglctkfkv lmlmslynvs
      181 inlkglkyis espgfipllw wllndpdtev cvhalrllqs vilepevlak sasemrdtlp
      241 fqriialsrs rnadlqalak elledlkile yea
//
LOCUS       XP_053912463             273 aa            linear   VRT 09-MAR-2023
DEFINITION  heat shock factor 2-binding protein isoform X4 [Cuculus canorus].
ACCESSION   XP_053912463
VERSION     XP_053912463.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056488.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..273
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..273
                     /product="heat shock factor 2-binding protein isoform X4"
                     /calculated_mol_wt=30721
     CDS             1..273
                     /gene="HSF2BP"
                     /coded_by="XM_054056488.1:1421..2242"
                     /db_xref="GeneID:104059277"
ORIGIN      
        1 mekkeeeieq lnmdcehfra rletaqadcm rekkekldlr qqlneakqql lqqaeyctem
       61 gaavctllwg vssneeavks ilggskavkf ftitaqtmes fvkslsedmk qqdldsdenq
      121 fvlalagivt nvaalacgre flvsssrell dtmmhllghm kpglctkfkv lmlmslynvs
      181 inlkglkyis espgfipllw wllndpdtev cvhalrllqs vilepevlak sasemrdtlp
      241 fqriialsrs rnadlqalak elledlkile yea
//
LOCUS       XP_053912464             273 aa            linear   VRT 09-MAR-2023
DEFINITION  heat shock factor 2-binding protein isoform X4 [Cuculus canorus].
ACCESSION   XP_053912464
VERSION     XP_053912464.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056489.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..273
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..273
                     /product="heat shock factor 2-binding protein isoform X4"
                     /calculated_mol_wt=30721
     CDS             1..273
                     /gene="HSF2BP"
                     /coded_by="XM_054056489.1:1402..2223"
                     /db_xref="GeneID:104059277"
ORIGIN      
        1 mekkeeeieq lnmdcehfra rletaqadcm rekkekldlr qqlneakqql lqqaeyctem
       61 gaavctllwg vssneeavks ilggskavkf ftitaqtmes fvkslsedmk qqdldsdenq
      121 fvlalagivt nvaalacgre flvsssrell dtmmhllghm kpglctkfkv lmlmslynvs
      181 inlkglkyis espgfipllw wllndpdtev cvhalrllqs vilepevlak sasemrdtlp
      241 fqriialsrs rnadlqalak elledlkile yea
//
LOCUS       XP_053912465             810 aa            linear   VRT 09-MAR-2023
DEFINITION  cilia- and flagella-associated protein 91 [Cuculus canorus].
ACCESSION   XP_053912465
VERSION     XP_053912465.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056490.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..810
                     /product="cilia- and flagella-associated protein 91"
                     /calculated_mol_wt=92117
     Region          190..342
                     /region_name="CFAP91"
                     /note="Cilia- and flagella-associated protein 91;
                     pfam14738"
                     /db_xref="CDD:464290"
     CDS             1..810
                     /gene="CFAP91"
                     /coded_by="XM_054056490.1:76..2508"
                     /db_xref="GeneID:104055861"
ORIGIN      
        1 meaatsvamn lsvtgralsp lpgaarrarg apgrtfdcly dplytlstek khskssvhvq
       61 fvsdkavkts vfrstlislt svqgyslcle gkdpvppfid rrwggstqqc lealqqlavp
      121 qpslqvpqvv ygdpevngrn rykyfarplv ssnkllpldv ayamaalehy vysdasdskv
      181 fgpelrtvgt qtdyrdgeaq tdpyspeyvv lggsfhellt latltwgrgl paglaevemi
      241 erarekrawe aalppmndas qitkrrkmma amerkewafr eqeieklqev qmkvlkklle
      301 kqqknqnely skrlddhwqk hqkakeekfk kiqhdcalml rklvakrknv igklerrdii
      361 keytdfssqt yaplsrigff pdnhseryvv knfyintfag lceleaslpd svtqvkikap
      421 kpkyittgyi rrsarlevel aqvheallkk kkvkepkkpl hvlekvekpv phpptpilek
      481 ksieeeekel aviclqkllr graiqnmmfe ekekrldlir elrtthalqe dkqlllkaek
      541 qmtlalqqqr dlqmhklssv ekhlareegr vlanifdfls kelvrlqeer kihafvmlae
      601 rqrrmreaee sgrrqeeerq rqeddeifrq mvkvhqssid sylediilss mentaeeqar
      661 keiqrmavei ndiayemesr rtrlqseeiv aelvynflip eaekmsvrek vrqsqrkhty
      721 aahriihsgt egvladlalh qqtsvgkike dppagtasaa lsgtaagpsa sdstssalav
      781 helaklqcke spgetaveps egsdkdptas
//
LOCUS       XP_053912466             810 aa            linear   VRT 09-MAR-2023
DEFINITION  cilia- and flagella-associated protein 91 [Cuculus canorus].
ACCESSION   XP_053912466
VERSION     XP_053912466.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056491.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..810
                     /product="cilia- and flagella-associated protein 91"
                     /calculated_mol_wt=92117
     Region          190..342
                     /region_name="CFAP91"
                     /note="Cilia- and flagella-associated protein 91;
                     pfam14738"
                     /db_xref="CDD:464290"
     CDS             1..810
                     /gene="CFAP91"
                     /coded_by="XM_054056491.1:76..2508"
                     /db_xref="GeneID:104055861"
ORIGIN      
        1 meaatsvamn lsvtgralsp lpgaarrarg apgrtfdcly dplytlstek khskssvhvq
       61 fvsdkavkts vfrstlislt svqgyslcle gkdpvppfid rrwggstqqc lealqqlavp
      121 qpslqvpqvv ygdpevngrn rykyfarplv ssnkllpldv ayamaalehy vysdasdskv
      181 fgpelrtvgt qtdyrdgeaq tdpyspeyvv lggsfhellt latltwgrgl paglaevemi
      241 erarekrawe aalppmndas qitkrrkmma amerkewafr eqeieklqev qmkvlkklle
      301 kqqknqnely skrlddhwqk hqkakeekfk kiqhdcalml rklvakrknv igklerrdii
      361 keytdfssqt yaplsrigff pdnhseryvv knfyintfag lceleaslpd svtqvkikap
      421 kpkyittgyi rrsarlevel aqvheallkk kkvkepkkpl hvlekvekpv phpptpilek
      481 ksieeeekel aviclqkllr graiqnmmfe ekekrldlir elrtthalqe dkqlllkaek
      541 qmtlalqqqr dlqmhklssv ekhlareegr vlanifdfls kelvrlqeer kihafvmlae
      601 rqrrmreaee sgrrqeeerq rqeddeifrq mvkvhqssid sylediilss mentaeeqar
      661 keiqrmavei ndiayemesr rtrlqseeiv aelvynflip eaekmsvrek vrqsqrkhty
      721 aahriihsgt egvladlalh qqtsvgkike dppagtasaa lsgtaagpsa sdstssalav
      781 helaklqcke spgetaveps egsdkdptas
//
LOCUS       XP_053912467             810 aa            linear   VRT 09-MAR-2023
DEFINITION  cilia- and flagella-associated protein 91 [Cuculus canorus].
ACCESSION   XP_053912467
VERSION     XP_053912467.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056492.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..810
                     /product="cilia- and flagella-associated protein 91"
                     /calculated_mol_wt=92117
     Region          190..342
                     /region_name="CFAP91"
                     /note="Cilia- and flagella-associated protein 91;
                     pfam14738"
                     /db_xref="CDD:464290"
     CDS             1..810
                     /gene="CFAP91"
                     /coded_by="XM_054056492.1:76..2508"
                     /db_xref="GeneID:104055861"
ORIGIN      
        1 meaatsvamn lsvtgralsp lpgaarrarg apgrtfdcly dplytlstek khskssvhvq
       61 fvsdkavkts vfrstlislt svqgyslcle gkdpvppfid rrwggstqqc lealqqlavp
      121 qpslqvpqvv ygdpevngrn rykyfarplv ssnkllpldv ayamaalehy vysdasdskv
      181 fgpelrtvgt qtdyrdgeaq tdpyspeyvv lggsfhellt latltwgrgl paglaevemi
      241 erarekrawe aalppmndas qitkrrkmma amerkewafr eqeieklqev qmkvlkklle
      301 kqqknqnely skrlddhwqk hqkakeekfk kiqhdcalml rklvakrknv igklerrdii
      361 keytdfssqt yaplsrigff pdnhseryvv knfyintfag lceleaslpd svtqvkikap
      421 kpkyittgyi rrsarlevel aqvheallkk kkvkepkkpl hvlekvekpv phpptpilek
      481 ksieeeekel aviclqkllr graiqnmmfe ekekrldlir elrtthalqe dkqlllkaek
      541 qmtlalqqqr dlqmhklssv ekhlareegr vlanifdfls kelvrlqeer kihafvmlae
      601 rqrrmreaee sgrrqeeerq rqeddeifrq mvkvhqssid sylediilss mentaeeqar
      661 keiqrmavei ndiayemesr rtrlqseeiv aelvynflip eaekmsvrek vrqsqrkhty
      721 aahriihsgt egvladlalh qqtsvgkike dppagtasaa lsgtaagpsa sdstssalav
      781 helaklqcke spgetaveps egsdkdptas
//
LOCUS       XP_053912468             810 aa            linear   VRT 09-MAR-2023
DEFINITION  cilia- and flagella-associated protein 91 [Cuculus canorus].
ACCESSION   XP_053912468
VERSION     XP_053912468.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056493.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..810
                     /product="cilia- and flagella-associated protein 91"
                     /calculated_mol_wt=92117
     Region          190..342
                     /region_name="CFAP91"
                     /note="Cilia- and flagella-associated protein 91;
                     pfam14738"
                     /db_xref="CDD:464290"
     CDS             1..810
                     /gene="CFAP91"
                     /coded_by="XM_054056493.1:76..2508"
                     /db_xref="GeneID:104055861"
ORIGIN      
        1 meaatsvamn lsvtgralsp lpgaarrarg apgrtfdcly dplytlstek khskssvhvq
       61 fvsdkavkts vfrstlislt svqgyslcle gkdpvppfid rrwggstqqc lealqqlavp
      121 qpslqvpqvv ygdpevngrn rykyfarplv ssnkllpldv ayamaalehy vysdasdskv
      181 fgpelrtvgt qtdyrdgeaq tdpyspeyvv lggsfhellt latltwgrgl paglaevemi
      241 erarekrawe aalppmndas qitkrrkmma amerkewafr eqeieklqev qmkvlkklle
      301 kqqknqnely skrlddhwqk hqkakeekfk kiqhdcalml rklvakrknv igklerrdii
      361 keytdfssqt yaplsrigff pdnhseryvv knfyintfag lceleaslpd svtqvkikap
      421 kpkyittgyi rrsarlevel aqvheallkk kkvkepkkpl hvlekvekpv phpptpilek
      481 ksieeeekel aviclqkllr graiqnmmfe ekekrldlir elrtthalqe dkqlllkaek
      541 qmtlalqqqr dlqmhklssv ekhlareegr vlanifdfls kelvrlqeer kihafvmlae
      601 rqrrmreaee sgrrqeeerq rqeddeifrq mvkvhqssid sylediilss mentaeeqar
      661 keiqrmavei ndiayemesr rtrlqseeiv aelvynflip eaekmsvrek vrqsqrkhty
      721 aahriihsgt egvladlalh qqtsvgkike dppagtasaa lsgtaagpsa sdstssalav
      781 helaklqcke spgetaveps egsdkdptas
//
LOCUS       XP_053912470             810 aa            linear   VRT 09-MAR-2023
DEFINITION  cilia- and flagella-associated protein 91 [Cuculus canorus].
ACCESSION   XP_053912470
VERSION     XP_053912470.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056495.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..810
                     /product="cilia- and flagella-associated protein 91"
                     /calculated_mol_wt=92117
     Region          190..342
                     /region_name="CFAP91"
                     /note="Cilia- and flagella-associated protein 91;
                     pfam14738"
                     /db_xref="CDD:464290"
     CDS             1..810
                     /gene="CFAP91"
                     /coded_by="XM_054056495.1:76..2508"
                     /db_xref="GeneID:104055861"
ORIGIN      
        1 meaatsvamn lsvtgralsp lpgaarrarg apgrtfdcly dplytlstek khskssvhvq
       61 fvsdkavkts vfrstlislt svqgyslcle gkdpvppfid rrwggstqqc lealqqlavp
      121 qpslqvpqvv ygdpevngrn rykyfarplv ssnkllpldv ayamaalehy vysdasdskv
      181 fgpelrtvgt qtdyrdgeaq tdpyspeyvv lggsfhellt latltwgrgl paglaevemi
      241 erarekrawe aalppmndas qitkrrkmma amerkewafr eqeieklqev qmkvlkklle
      301 kqqknqnely skrlddhwqk hqkakeekfk kiqhdcalml rklvakrknv igklerrdii
      361 keytdfssqt yaplsrigff pdnhseryvv knfyintfag lceleaslpd svtqvkikap
      421 kpkyittgyi rrsarlevel aqvheallkk kkvkepkkpl hvlekvekpv phpptpilek
      481 ksieeeekel aviclqkllr graiqnmmfe ekekrldlir elrtthalqe dkqlllkaek
      541 qmtlalqqqr dlqmhklssv ekhlareegr vlanifdfls kelvrlqeer kihafvmlae
      601 rqrrmreaee sgrrqeeerq rqeddeifrq mvkvhqssid sylediilss mentaeeqar
      661 keiqrmavei ndiayemesr rtrlqseeiv aelvynflip eaekmsvrek vrqsqrkhty
      721 aahriihsgt egvladlalh qqtsvgkike dppagtasaa lsgtaagpsa sdstssalav
      781 helaklqcke spgetaveps egsdkdptas
//
LOCUS       XP_009558804             153 aa            linear   VRT 09-MAR-2023
DEFINITION  insulin-like growth factor I [Cuculus canorus].
ACCESSION   XP_009558804
VERSION     XP_009558804.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560509.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..153
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..153
                     /product="insulin-like growth factor I"
                     /calculated_mol_wt=17136
     Region          49..116
                     /region_name="IlGF"
                     /note="insulin_like growth factors; specific to
                     vertebrates. Members include a number of peptides
                     including insulin-like growth factors I and II, which play
                     a variety of roles in controlling processes such as
                     growth, differentiation, and reproduction. On a...;
                     cd04368"
                     /db_xref="CDD:239834"
     Site            order(51,60,68..72)
                     /site_type="active"
                     /note="IGFBP binding surface [active]"
                     /db_xref="CDD:239834"
     Site            order(69,71..72,92)
                     /site_type="active"
                     /note="type 1 IGF- and insulin-receptor binding surface
                     [active]"
                     /db_xref="CDD:239834"
     Site            order(97..99,103..104)
                     /site_type="active"
                     /note="type 2 IGF-receptor binding surface [active]"
                     /db_xref="CDD:239834"
     CDS             1..153
                     /gene="IGF1"
                     /coded_by="XM_009560509.2:189..650"
                     /db_xref="GeneID:104058924"
ORIGIN      
        1 mekinslstq lvkccfcdfl kvkmhtvsyi hffylglcll tltssaaagp etlcgaelvd
       61 alqfvcgdrg fyfskptgyg sssrrlhhkg ivdeccfqsc dlrrlemyca pikppksars
      121 vraqrhtdmp kaqkevhlkn tsrgntgnrn yrm
//
LOCUS       XP_053912471             873 aa            linear   VRT 09-MAR-2023
DEFINITION  probable ATP-dependent RNA helicase DDX10 [Cuculus canorus].
ACCESSION   XP_053912471
VERSION     XP_053912471.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056496.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..873
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..873
                     /product="probable ATP-dependent RNA helicase DDX10"
                     /calculated_mol_wt=99709
     Region          67..467
                     /region_name="SrmB"
                     /note="Superfamily II DNA and RNA helicase [Replication,
                     recombination and repair]; COG0513"
                     /db_xref="CDD:440279"
     Region          77..274
                     /region_name="DEADc_DDX10"
                     /note="DEAD-box helicase domain of DEAD box protein 10;
                     cd17941"
                     /db_xref="CDD:350699"
     Site            order(86,88,90,93,111..118,220)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350699"
     Region          449..507
                     /region_name="DUF4217"
                     /note="Domain of unknown function (DUF4217); pfam13959"
                     /db_xref="CDD:464056"
     CDS             1..873
                     /gene="DDX10"
                     /coded_by="XM_054056496.1:84..2705"
                     /db_xref="GeneID:104055352"
ORIGIN      
        1 mgraggdgae vdpvrsferw kkkytrrtkr lrlqrkerqk pewqveregi grlvqrypgi
       61 npseierfsd fplskktlkg lqeaqyrlvt eiqrqtigla lqgkdvlgaa ktgsgktlaf
      121 ivpalellyr qqwtsadglg vliisptrel ayqtfkvlrk vgknhefsag liiggkdlke
      181 eterihhinm lictpgrllq hmdetsyfya sdlqmlilde adrildmgfa dtmnaiienl
      241 pkkrqtllfs atqtksvkdl arlslkdpey vwvhekakfs tpatlgqnyv vcelqqkvnm
      301 lysflrshlk kksivffasc kevqylfrvf cklqpglpll alhgkqhqmk rmevytcfvr
      361 kkaavlfatd iaargldfpa vnwviqfdcp edantyihrv grtarykegg eallvllpse
      421 ekgmveqlaq rkvpiseiki npekltdiqk rmqaflaqdq elkdkaqrcf vsylrsvylm
      481 knkevfdvfk lplaeyalsl glamaprvrf lqkvqkqlca neaadgmdrl keteqnknti
      541 slinsegvek cetnfsgkas skktkakerr keteecpass egdeesgese ddskevieee
      601 eekeipvsss vqnpdsmqff eddddddddd akdldlltvk rrnvfgidak dnpapnesks
      661 kmkkkttktq eakkilkkkf kvntkivfne dgelvqqwpp vqksslakad eeddasginl
      721 dkakeilree dkfdkeeyrk kikekhrekr lkekaarrea rnknaqaeee tvaflahsgs
      781 eeefdpstlp dpdkyrdsde eqdsvsedsc seleeksgrk krsysnsdaa eemplkrkka
      841 kfsqeedpyl pldtglslae deelvlhlln sqs
//
LOCUS       XP_009565422             334 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-10 receptor subunit beta [Cuculus canorus].
ACCESSION   XP_009565422
VERSION     XP_009565422.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009567127.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009565422.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..334
                     /product="interleukin-10 receptor subunit beta"
                     /calculated_mol_wt=37922
     Region          9..104
                     /region_name="Tissue_fac"
                     /note="Tissue factor; pfam01108"
                     /db_xref="CDD:460067"
     Region          115..218
                     /region_name="Interfer-bind"
                     /note="Interferon-alpha/beta receptor, fibronectin type
                     III; pfam09294"
                     /db_xref="CDD:462746"
     CDS             1..334
                     /gene="IL10RB"
                     /coded_by="XM_009567127.2:126..1130"
                     /db_xref="GeneID:104064759"
ORIGIN      
        1 maaalrcalc sclllrvsgi vpkpqnarii svnlrsvlqw daprfhkgni sytvqsksni
       61 fpgekyksvs tnlrltecdi sflspyghyv lqvraesenn hskwvtvrfn pmddtvigpp
      121 dvkvesesgs lhvdfigpfa eheqdrwslr qlygswknri lywkkgshte vnhietehns
      181 yiisqlepwt tyciqvqavi pewnktgels gelceqtthn gvtpvwiivt vligsmlvva
      241 itvlvgffsf fylyrltryv fcpsyifpqh lkeflskpps gsqyfsslpq eehlfydklt
      301 viseesknls ngsgdetskt sehlqdsele dsds
//
LOCUS       XP_053912473             301 aa            linear   VRT 09-MAR-2023
DEFINITION  homeobox protein NANOG [Cuculus canorus].
ACCESSION   XP_053912473
VERSION     XP_053912473.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056498.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..301
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..301
                     /product="homeobox protein NANOG"
                     /calculated_mol_wt=32842
     Region          110..165
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     CDS             1..301
                     /gene="LOC104060636"
                     /coded_by="XM_054056498.1:1..906"
                     /db_xref="GeneID:104060636"
ORIGIN      
        1 mcahlalppy qpypsgtgmg yldfywnsag eaghvtasaa saeatsacqs peagkrqmae
       61 eslasstsgn fsqftpdsat sphsassspq pmakshkgrk egreevkkak srtafskeql
      121 qtlhqrfqsq kylspqqire laaalgltyk qvktwfqnrr mklkrcqkhs lwteraqclt
      181 qsgfqpsayl dmhskfhqgy piaaasniqt mpplrqhyga gqntytitts edggvfgkgg
      241 gtcsvqqtvg fiaqhkvdfy hscpgsveyp ctktsdscnf hhtasigtpf ptntgqhlyh
      301 s
//
LOCUS       XP_009556247             447 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat domain-containing protein SOWAHC [Cuculus canorus].
ACCESSION   XP_009556247
VERSION     XP_009556247.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557952.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556247.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..447
                     /product="ankyrin repeat domain-containing protein SOWAHC"
                     /calculated_mol_wt=48009
     Region          1..65
                     /region_name="CSB_WHD"
                     /note="winged-helix domain (WHD) found in cockayne
                     syndrome group B (CSB) and similar proteins; cd22254"
                     /db_xref="CDD:439329"
     Region          197..225
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          <229..>308
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          229..265
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          267..299
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..447
                     /gene="SOWAHC"
                     /coded_by="XM_009557952.2:29..1372"
                     /db_xref="GeneID:104056674"
ORIGIN      
        1 maelrqeavv gflasrggra pnaellehfr ewlspaerds rdaarrrfke lvnavatvrq
       61 epgtgvkyvh lrrrfcppea praattpgek eegaagdaed apasggdagg rappaagrrg
      121 eppragggqr rgsrrggede eaaaggggrr gqrepqrspq pkrgavtrgr dsdsasvase
      181 eegstggsva ldplehawml sasdgrwesl egllscepal lckrdfitgf tvlhwaakhg
      241 rqellatlvn faqrhrlpvd inartsgght alhiaamhgh aevvkllvga fdadvdirdy
      301 sgrkaaqylh qgtsgdmrsl vgaldeeeee edgeegaagn gsgrwrlskv lpsnligyrl
      361 shhhhhhhsa gdeaegtega avpgkgkema rkasgsgrmk prlnkirfrt qiihntpsfr
      421 gdaeeeeqee kslkasfklr pksnvfg
//
LOCUS       XP_053912474             895 aa            linear   VRT 09-MAR-2023
DEFINITION  short transient receptor potential channel 6 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912474
VERSION     XP_053912474.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056499.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..895
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..895
                     /product="short transient receptor potential channel 6
                     isoform X1"
                     /calculated_mol_wt=102381
     Region          73..861
                     /region_name="trp"
                     /note="transient-receptor-potential calcium channel
                     protein; TIGR00870"
                     /db_xref="CDD:273311"
     Site            order(98..100,102..103,107,110,121,123,125,129..130,
                     133..135,137..138,142,145,150,152,154,157..158,161..163,
                     165..166,170,173)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          123..150
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          152..176
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          203..238
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..895
                     /gene="TRPC6"
                     /coded_by="XM_054056499.1:285..2972"
                     /db_xref="GeneID:104055311"
ORIGIN      
        1 msqaqpyapr ksgspaggtr rndsqdylll daepseesal ppyafypvrg nenrlalrrq
       61 tilrekgrrq asrgpaymfn dhstslslee erfldaaeyg nipvirkmle ecsslnvncv
      121 dymgqnalql avanehleit elllkkenls rvgdalllai skgyvrivea ilnhpafaeg
      181 krlalspsqs elqhddfyay dedgtrfshd vtpiilaahc heyeivhtll rkgaridrph
      241 dyfckcsecn qkqkhdsfsh srsrinaykg laspaylsls sedpvmtale lsnelavlan
      301 iekefkndyk klsmqckdfv vglldlcrnt eeveailngd vemshnngeh grpslsrlkl
      361 aikyevkkfv ahpncqqqll siwyenlsgl rqqtmavkfl vvlavavglp flsmaywiap
      421 csklgrimrg pfmkfvahaa sftiflgllv mnaadrfdgt klrpnettgn vkqlfrmkts
      481 cfswmemlii swvigmiwse ckeiwsqgpk eylfelwnml dfgmlaifaa sfiarfmafw
      541 hasraqnfvd anmkdltspt lepnikyytl arinwdpsdp qiiseglyai avvlsfsria
      601 yilpanesfg plqislgrtv kdifkfmvif imvfvafmig mfnlysyylg akqneafttv
      661 eesfktlfwa ifglsevksv vinykhkfie nigyvlygvy nvtmvivlln mliaminssf
      721 qeieddadve wkfaraklwf syfeegrtlp vpfnlvpspk sllylllrik kwiskpflcq
      781 kksfqedaem nklgqrkqss irssdevhln slnnpprqyq kimkrlikry vlkaqidkes
      841 devnegelke ikqdisslry elleeksqns edlaelirkl geklsidske eeskr
//
LOCUS       XP_053912475             833 aa            linear   VRT 09-MAR-2023
DEFINITION  short transient receptor potential channel 6 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912475
VERSION     XP_053912475.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056500.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..833
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..833
                     /product="short transient receptor potential channel 6
                     isoform X2"
                     /calculated_mol_wt=95320
     Region          73..799
                     /region_name="TRPV"
                     /note="Transient Receptor Potential channel, Vanilloid
                     subfamily (TRPV); cl40437"
                     /db_xref="CDD:454755"
     Site            order(98..100,102..103,107,110,121,123,125,129..130,
                     133..135,137..138,142,145,150,152,154,157..158,161..163,
                     165..166,170,173)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          123..150
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          152..176
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          203..238
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..833
                     /gene="TRPC6"
                     /coded_by="XM_054056500.1:285..2786"
                     /db_xref="GeneID:104055311"
ORIGIN      
        1 msqaqpyapr ksgspaggtr rndsqdylll daepseesal ppyafypvrg nenrlalrrq
       61 tilrekgrrq asrgpaymfn dhstslslee erfldaaeyg nipvirkmle ecsslnvncv
      121 dymgqnalql avanehleit elllkkenls rvgdalllai skgyvrivea ilnhpafaeg
      181 krlalspsqs elqhddfyay dedgtrfshd vtpiilaahc heyeivhtll rkgaridrph
      241 dyfckcsecn qkqkhdsfsh srsrinaykg laspaylsls sedpvmtale lsnelavlan
      301 iekefkfvah pncqqqllsi wyenlsglrq qtmavkflvv lavavglpfl smaywiapcs
      361 klgrimrgpf mkfvahaasf tiflgllvmn aadrfdgtkl rpnettgnvk qlfrmktscf
      421 swmemliisw vigmiwseck eiwsqgpkey lfelwnmldf gmlaifaasf iarfmafwha
      481 sraqnfvdan mkdltsptle pnikyytlar inwdpsdpqi iseglyaiav vlsfsriayi
      541 lpanesfgpl qislgrtvkd ifkfmvifim vfvafmigmf nlysyylgak qneafttvee
      601 sfktlfwaif glsevksvvi nykhkfieni gyvlygvynv tmvivllnml iaminssfqe
      661 ieddadvewk faraklwfsy feegrtlpvp fnlvpspksl lylllrikkw iskpflcqkk
      721 sfqedaemnk lgqrkqssir ssdevhlnsl nnpprqyqki mkrlikryvl kaqidkesde
      781 vnegelkeik qdisslryel leeksqnsed laelirklge klsidskeee skr
//
LOCUS       XP_053912476             818 aa            linear   VRT 09-MAR-2023
DEFINITION  short transient receptor potential channel 6 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053912476
VERSION     XP_053912476.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056501.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..818
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..818
                     /product="short transient receptor potential channel 6
                     isoform X3"
                     /calculated_mol_wt=93763
     Region          1..784
                     /region_name="trp"
                     /note="transient-receptor-potential calcium channel
                     protein; TIGR00870"
                     /db_xref="CDD:273311"
     Site            order(21..23,25..26,30,33,44,46,48,52..53,56..58,60..61,
                     65,68,73,75,77,80..81,84..86,88..89,93,96)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          46..73
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          75..99
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          126..161
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..818
                     /gene="TRPC6"
                     /coded_by="XM_054056501.1:223..2679"
                     /db_xref="GeneID:104055311"
ORIGIN      
        1 mfndhstsls leeerfldaa eygnipvirk mleecsslnv ncvdymgqna lqlavanehl
       61 eitelllkke nlsrvgdall laiskgyvri veailnhpaf aegkrlalsp sqselqhddf
      121 yaydedgtrf shdvtpiila ahcheyeivh tllrkgarid rphdyfckcs ecnqkqkhds
      181 fshsrsrina ykglaspayl slssedpvmt alelsnelav laniekefkn dykklsmqck
      241 dfvvglldlc rnteeveail ngdvemshnn gehgrpslsr lklaikyevk kfvahpncqq
      301 qllsiwyenl sglrqqtmav kflvvlavav glpflsmayw iapcsklgri mrgpfmkfva
      361 haasftiflg llvmnaadrf dgtklrpnet tgnvkqlfrm ktscfswmem liiswvigmi
      421 wseckeiwsq gpkeylfelw nmldfgmlai faasfiarfm afwhasraqn fvdanmkdlt
      481 sptlepniky ytlarinwdp sdpqiisegl yaiavvlsfs riayilpane sfgplqislg
      541 rtvkdifkfm vifimvfvaf migmfnlysy ylgakqneaf ttveesfktl fwaifglsev
      601 ksvvinykhk fienigyvly gvynvtmviv llnmliamin ssfqeiedda dvewkfarak
      661 lwfsyfeegr tlpvpfnlvp spksllylll rikkwiskpf lcqkksfqed aemnklgqrk
      721 qssirssdev hlnslnnppr qyqkimkrli kryvlkaqid kesdevnege lkeikqdiss
      781 lryelleeks qnsedlaeli rklgeklsid skeeeskr
//
LOCUS       XP_053912477             140 aa            linear   VRT 09-MAR-2023
DEFINITION  mitochondrial import receptor subunit TOM22 homolog [Cuculus
            canorus].
ACCESSION   XP_053912477
VERSION     XP_053912477.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056502.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..140
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..140
                     /product="mitochondrial import receptor subunit TOM22
                     homolog"
                     /calculated_mol_wt=15142
     Region          47..103
                     /region_name="TOM22"
                     /note="Mitochondrial import receptor subunit TOM22 and
                     similar proteins; cd22884"
                     /db_xref="CDD:439375"
     Site            order(84..85,88..89,91..93,95..96,99..100,103)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:439375"
     Site            order(88,91,95..96,99,103)
                     /site_type="other"
                     /note="putative phospholipid binding site [chemical
                     binding]"
                     /db_xref="CDD:439375"
     CDS             1..140
                     /gene="TOMM22"
                     /coded_by="XM_054056502.1:45..467"
                     /db_xref="GeneID:104065920"
ORIGIN      
        1 maaaapvspe ellpkggagk aeeledelee eedddeelde tlaerlwglt emfpesvraa
       61 agatfdlslt vaqkmyrfsr aalwigttsf milvlpvvfe teklqmeqqq qlqqrqillg
      121 pntglsggmp galpplpgki
//
LOCUS       XP_053912478             127 aa            linear   VRT 09-MAR-2023
DEFINITION  protein chibby homolog 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912478
VERSION     XP_053912478.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056503.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..127
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..127
                     /product="protein chibby homolog 1 isoform X1"
                     /calculated_mol_wt=14543
     Region          2..114
                     /region_name="Chibby"
                     /note="Chibby family; pfam14645"
                     /db_xref="CDD:464233"
     CDS             1..127
                     /gene="CBY1"
                     /coded_by="XM_054056503.1:344..727"
                     /db_xref="GeneID:104065919"
ORIGIN      
        1 mplfgstfsp kktpprkcas fsnlqlldrs treielgley gtptmnlagq slkfengqwv
       61 adsgsftgdr remqrlrkrn qqleeennll rlkvdvlldm lsettaasrl mekeleelks
      121 hsrrrkk
//
LOCUS       XP_053912479             127 aa            linear   VRT 09-MAR-2023
DEFINITION  protein chibby homolog 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912479
VERSION     XP_053912479.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056504.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..127
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..127
                     /product="protein chibby homolog 1 isoform X1"
                     /calculated_mol_wt=14543
     Region          2..114
                     /region_name="Chibby"
                     /note="Chibby family; pfam14645"
                     /db_xref="CDD:464233"
     CDS             1..127
                     /gene="CBY1"
                     /coded_by="XM_054056504.1:341..724"
                     /db_xref="GeneID:104065919"
ORIGIN      
        1 mplfgstfsp kktpprkcas fsnlqlldrs treielgley gtptmnlagq slkfengqwv
       61 adsgsftgdr remqrlrkrn qqleeennll rlkvdvlldm lsettaasrl mekeleelks
      121 hsrrrkk
//
LOCUS       XP_053912481             127 aa            linear   VRT 09-MAR-2023
DEFINITION  protein chibby homolog 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912481
VERSION     XP_053912481.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056506.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..127
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..127
                     /product="protein chibby homolog 1 isoform X1"
                     /calculated_mol_wt=14543
     Region          2..114
                     /region_name="Chibby"
                     /note="Chibby family; pfam14645"
                     /db_xref="CDD:464233"
     CDS             1..127
                     /gene="CBY1"
                     /coded_by="XM_054056506.1:470..853"
                     /db_xref="GeneID:104065919"
ORIGIN      
        1 mplfgstfsp kktpprkcas fsnlqlldrs treielgley gtptmnlagq slkfengqwv
       61 adsgsftgdr remqrlrkrn qqleeennll rlkvdvlldm lsettaasrl mekeleelks
      121 hsrrrkk
//
LOCUS       XP_053912482             113 aa            linear   VRT 09-MAR-2023
DEFINITION  protein chibby homolog 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912482
VERSION     XP_053912482.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056507.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..113
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..113
                     /product="protein chibby homolog 1 isoform X2"
                     /calculated_mol_wt=12946
     Region          <13..100
                     /region_name="Chibby"
                     /note="Chibby family; pfam14645"
                     /db_xref="CDD:464233"
     CDS             1..113
                     /gene="CBY1"
                     /coded_by="XM_054056507.1:210..551"
                     /db_xref="GeneID:104065919"
ORIGIN      
        1 mlgipeldtg lqldrstrei elgleygtpt mnlagqslkf engqwvadsg sftgdrremq
       61 rlrkrnqqle eennllrlkv dvlldmlset taasrlmeke leelkshsrr rkk
//
LOCUS       XP_053912483             188 aa            linear   VRT 09-MAR-2023
DEFINITION  guanylyl cyclase-activating protein 1-like isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912483
VERSION     XP_053912483.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056508.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..188
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..188
                     /product="guanylyl cyclase-activating protein 1-like
                     isoform X1"
                     /calculated_mol_wt=21711
     Region          11..160
                     /region_name="FRQ1"
                     /note="Ca2+-binding protein, EF-hand superfamily [Signal
                     transduction mechanisms]; COG5126"
                     /db_xref="CDD:444056"
     CDS             1..188
                     /gene="LOC104061433"
                     /coded_by="XM_054056508.1:1225..1791"
                     /db_xref="GeneID:104061433"
ORIGIN      
        1 mgsnssstvd dlqaveihhw ykkfmtecps gqltehefkq ffglrgldpe aneyieqmfr
       61 tfdmnkdgyi dfmeyvaals lvlrgkmeqk lrwyfklydv dgngcidrhe llniikaira
      121 inggdhelsa eeftnrvfnk idvngdgels leefvegark deefmevlmk sldlshivam
      181 innrrhsv
//
LOCUS       XP_053912484             188 aa            linear   VRT 09-MAR-2023
DEFINITION  guanylyl cyclase-activating protein 1-like isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912484
VERSION     XP_053912484.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056509.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..188
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..188
                     /product="guanylyl cyclase-activating protein 1-like
                     isoform X1"
                     /calculated_mol_wt=21711
     Region          11..160
                     /region_name="FRQ1"
                     /note="Ca2+-binding protein, EF-hand superfamily [Signal
                     transduction mechanisms]; COG5126"
                     /db_xref="CDD:444056"
     CDS             1..188
                     /gene="LOC104061433"
                     /coded_by="XM_054056509.1:162..728"
                     /db_xref="GeneID:104061433"
ORIGIN      
        1 mgsnssstvd dlqaveihhw ykkfmtecps gqltehefkq ffglrgldpe aneyieqmfr
       61 tfdmnkdgyi dfmeyvaals lvlrgkmeqk lrwyfklydv dgngcidrhe llniikaira
      121 inggdhelsa eeftnrvfnk idvngdgels leefvegark deefmevlmk sldlshivam
      181 innrrhsv
//
LOCUS       XP_053912485             164 aa            linear   VRT 09-MAR-2023
DEFINITION  guanylyl cyclase-activating protein 1-like isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912485
VERSION     XP_053912485.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056510.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..164
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..164
                     /product="guanylyl cyclase-activating protein 1-like
                     isoform X2"
                     /calculated_mol_wt=18949
     Region          6..136
                     /region_name="FRQ1"
                     /note="Ca2+-binding protein, EF-hand superfamily [Signal
                     transduction mechanisms]; COG5126"
                     /db_xref="CDD:444056"
     CDS             1..164
                     /gene="LOC104061433"
                     /coded_by="XM_054056510.1:137..631"
                     /db_xref="GeneID:104061433"
ORIGIN      
        1 mtecpsgqlt ehefkqffgl rgldpeaney ieqmfrtfdm nkdgyidfme yvaalslvlr
       61 gkmeqklrwy fklydvdgng cidrhellni ikairaingg dhelsaeeft nrvfnkidvn
      121 gdgelsleef vegarkdeef mevlmksldl shivaminnr rhsv
//
LOCUS       XP_053912486             441 aa            linear   VRT 09-MAR-2023
DEFINITION  immunoglobulin superfamily member 11 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912486
VERSION     XP_053912486.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056511.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..441
                     /product="immunoglobulin superfamily member 11 isoform X1"
                     /calculated_mol_wt=46747
     Region          32..133
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          47..51
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409552"
     Region          63..67
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409552"
     Region          110..114
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409552"
     Region          124..129
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409552"
     Region          161..226
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     CDS             1..441
                     /gene="IGSF11"
                     /coded_by="XM_054056511.1:228..1553"
                     /db_xref="GeneID:104055855"
ORIGIN      
        1 mtrrrpgggg rwvpaalaal lalrglvspl evsvssaniq vargqtavlp ctfttnaalt
       61 nlnviwmvip lsnanqpqqv ilyqggqifg gapqfygrvg favtmpttsa sifinntqls
      121 dtgtyqclvn nlpdrgvrni gvvgltvlvp psaplcriqg sldvgsditl tcsseegipr
      181 ptylwekldn vpklpptatq dqvqgtvtlr nistvssgly qcvasnaigt stclldlqvi
      241 aphprsigli agavatgavv lvicivlvav alfywknkhk eeeeeeipne ireddlppkc
      301 ssaaktfhad asssendtlt ssntynsryw ndpkanhvtd sftrfgnsnd ahqppfsrsg
      361 smstrpiyan gghpspappk tlvvtastap spqevirsng svsrktrpph trsyavsqat
      421 lerigavpvm vpaqsragsl v
//
LOCUS       XP_053912487             419 aa            linear   VRT 09-MAR-2023
DEFINITION  immunoglobulin superfamily member 11 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912487
VERSION     XP_053912487.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056512.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..419
                     /product="immunoglobulin superfamily member 11 isoform X2"
                     /calculated_mol_wt=44464
     Region          10..111
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          25..29
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409552"
     Region          41..45
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409552"
     Region          88..92
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409552"
     Region          102..107
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409552"
     Region          139..204
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     CDS             1..419
                     /gene="IGSF11"
                     /coded_by="XM_054056512.1:66..1325"
                     /db_xref="GeneID:104055855"
ORIGIN      
        1 mdglvsplev svssaniqva rgqtavlpct fttnaaltnl nviwmvipls nanqpqqvil
       61 yqggqifgga pqfygrvgfa vtmpttsasi finntqlsdt gtyqclvnnl pdrgvrnigv
      121 vgltvlvpps aplcriqgsl dvgsditltc sseegiprpt ylwekldnvp klpptatqdq
      181 vqgtvtlrni stvssglyqc vasnaigtst clldlqviap hprsigliag avatgavvlv
      241 icivlvaval fywknkhkee eeeeipneir eddlppkcss aaktfhadas ssendtltss
      301 ntynsrywnd pkanhvtdsf trfgnsndah qppfsrsgsm strpiyangg hpspappktl
      361 vvtastapsp qevirsngsv srktrpphtr syavsqatle rigavpvmvp aqsragslv
//
LOCUS       XP_053912488             400 aa            linear   VRT 09-MAR-2023
DEFINITION  immunoglobulin superfamily member 11 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912488
VERSION     XP_053912488.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056513.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..400
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..400
                     /product="immunoglobulin superfamily member 11 isoform X3"
                     /calculated_mol_wt=42498
     Region          32..133
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          47..51
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409552"
     Region          63..67
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409552"
     Region          110..114
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409552"
     Region          124..129
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409552"
     Region          154..>205
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          168..172
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409542"
     Region          182..186
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409542"
     CDS             1..400
                     /gene="IGSF11"
                     /coded_by="XM_054056513.1:259..1461"
                     /db_xref="GeneID:104055855"
ORIGIN      
        1 mtrrrpgggg rwvpaalaal lalrglvspl evsvssaniq vargqtavlp ctfttnaalt
       61 nlnviwmvip lsnanqpqqv ilyqggqifg gapqfygrvg favtmpttsa sifinntqls
      121 dtgtyqclvn nlpdrgvrni gvvgltvlvp psaplcriqg sldvgsditl tcsseegipr
      181 ptylwekldn vpklpptatq ahprsiglia gavatgavvl vicivlvava lfywknkhke
      241 eeeeeipnei reddlppkcs saaktfhada sssendtlts sntynsrywn dpkanhvtds
      301 ftrfgnsnda hqppfsrsgs mstrpiyang ghpspappkt lvvtastaps pqevirsngs
      361 vsrktrppht rsyavsqatl erigavpvmv paqsragslv
//
LOCUS       XP_009568229             840 aa            linear   VRT 09-MAR-2023
DEFINITION  SLIT and NTRK-like protein 6 [Cuculus canorus].
ACCESSION   XP_009568229
VERSION     XP_009568229.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009569934.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009568229.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..840
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..840
                     /product="SLIT and NTRK-like protein 6"
                     /calculated_mol_wt=94634
     Region          <68..>219
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          68..89
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          92..113
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          114..137
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          138..161
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          162..177
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          185..387
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          210..222
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          364..385
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <365..>517
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          388..411
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          412..435
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          436..459
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          460..481
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          516..566
                     /region_name="LRRCT"
                     /note="Leucine rich repeat C-terminal domain; smart00082"
                     /db_xref="CDD:214507"
     CDS             1..840
                     /gene="SLITRK6"
                     /coded_by="XM_009569934.2:535..3057"
                     /db_xref="GeneID:104067223"
ORIGIN      
        1 mklwifilys vvaapdpsqs qpsfssirgs cqslcsceek ddtmiincee rgiktvsein
       61 vppsrpfhln llnngltmlh vndfaglvna islhlglnni adiepgafng lsllkqlhin
      121 hnsletlked tfnglenlef lqadnnfitv idpsafskln rlkvlilndn aieylppnif
      181 rfvplthldl rgnqlqtlpy vgflehigri ldlqlednkw acncdllqlk iwlenmppqs
      241 iigdvvcnsp plikgsilsr lkkeslcpth pvseledpsg slplvvttsi sdshlstkmi
      301 pilkaptkep slvfrtskpa tqfpgincpv pchctshmls gvlmhcqern ieslsdlgpp
      361 psnpkklila gniiqsllqs dlvdyaslem lhlgnnriei leegsfmnlt rlqklylngn
      421 hltklsqnlf lglqhleyly leynaikevl pgtfnampkl kvlylnnnll qtlpphifsg
      481 vpltrlnlkt nqfshlpvsn vldqldmlvq ielednpwdc tcdsvglqkw iqklskntmm
      541 gdifckspgh lakkelksln seilcpglin spvlpthasf vvvttstttt ntadtilrsl
      601 tdavplsvli lgllivfiti vfcaagivvl vlhrrrrckk kqeeeqmrds spvhlqysmy
      661 ghktthhtte rpaatlyeqr mvtpmvqvyr spsfspkhtq qeedgsekea ndsrhlrrsl
      721 lerenssplt gsnvkykatd qsadflsfqd asclyrnile kerelqqlgi teylrknivq
      781 lqpdmevhyp atheelklme tlmysrprkv fleqtkneyf elkanlhaep dylevleqqt
//
LOCUS       XP_053912490             246 aa            linear   VRT 09-MAR-2023
DEFINITION  apolipoprotein L domain-containing protein 1 [Cuculus canorus].
ACCESSION   XP_053912490
VERSION     XP_053912490.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056515.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..246
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..246
                     /product="apolipoprotein L domain-containing protein 1"
                     /calculated_mol_wt=26596
     Region          25..>103
                     /region_name="ApoL"
                     /note="Apolipoprotein L; pfam05461"
                     /db_xref="CDD:461657"
     CDS             1..246
                     /gene="APOLD1"
                     /coded_by="XM_054056515.1:163..903"
                     /db_xref="GeneID:104055467"
ORIGIN      
        1 merngvdfpq aldpthhfhi alldqrrrlh gqiahlhkaa rklnklrkrs lianvsgstl
       61 taagavtaiv glslspatlg asllasavgl glataggavs itsdlslvlc nsrevrkvqe
      121 iamtcrkqmr eilgcleflr rgqgpgdptl rqsekrasis lynsicfmvf cgshsflvpe
      181 ytkevtkvsq avlkakiqkl aanletctra mdevcellea rtelsphtrr lslgvkttfe
      241 tprpss
//
LOCUS       XP_009556057             242 aa            linear   VRT 09-MAR-2023
DEFINITION  seven in absentia homolog 3 [Cuculus canorus].
ACCESSION   XP_009556057
VERSION     XP_009556057.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557762.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..242
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..242
                     /product="seven in absentia homolog 3"
                     /calculated_mol_wt=26928
     Region          106..232
                     /region_name="Sina"
                     /note="Seven in absentia (Sina) protein family, C-terminal
                     substrate binding domain; composed of the Drosophila Sina
                     protein, the mammalian Sina homolog (Siah), the plant
                     protein SINAT5, and similar proteins. Sina, Siah and
                     SINAT5 are RING-containing proteins...; cd03829"
                     /db_xref="CDD:239753"
     Site            order(113..115,117,119,128..129)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:239753"
     Site            order(170,182..188,190,205..206,213,217)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239753"
     CDS             1..242
                     /gene="SIAH3"
                     /coded_by="XM_009557762.2:212..940"
                     /db_xref="GeneID:104056505"
ORIGIN      
        1 mlfftqcfga vldlihlrfq hykakrvfsa agqlvcvvnp thslkyapth caaaqtsaeq
       61 gvfppchhhe avhdpqlvpc tcplyscpwe ghlevvvshl rqthcinilq gaeivflatd
      121 mhlpaptdwi imhsclghqf llvlrkqeky eghpqffatm mligtptqad nftyrlelnr
      181 nqrrlkweat prsvlecvds visdgdclvl ntslaqlfsd ngslaigiai ttskvhsaea
      241 em
//
LOCUS       XP_053912491             793 aa            linear   VRT 09-MAR-2023
DEFINITION  POU domain, class 2, transcription factor 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912491
VERSION     XP_053912491.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056516.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..793
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..793
                     /product="POU domain, class 2, transcription factor 1
                     isoform X1"
                     /calculated_mol_wt=81241
     Region          328..402
                     /region_name="POU"
                     /note="Found in Pit-Oct-Unc transcription factors;
                     smart00352"
                     /db_xref="CDD:197673"
     Region          430..486
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     Region          500..776
                     /region_name="POU2F1_C"
                     /note="POU domain, class 2, transcription factor 1
                     C-terminal; pfam19536"
                     /db_xref="CDD:437368"
     CDS             1..793
                     /gene="POU2F1"
                     /coded_by="XM_054056516.1:10..2391"
                     /db_xref="GeneID:104055978"
ORIGIN      
        1 madggaasqd essaaavaaa adsrmnnpse tskpsmesgd gntgtqtngl dfkkqpvpvg
       61 gaistaqaqa flghlhqvql agtslqaaaq slnvqsksne esgdsqqpsq psqqpsvqaa
      121 ipqtqlmlag gqitgvrftq vngskasyla ndgsiygsph rtltltpaqq qlllqqaqaq
      181 llaaavqhsa sqqhsaagat isasaatpmt qiplsqpiqi aqdlqhlqql qqqnlnlqqf
      241 vlvhpttnlq paqfiisqtp qgqqgllqaq nlltqlpqqs qanllqsqps itlasqpatp
      301 trtiaatpiq plpqsqstpk ridtpsleep sdleeleqfa ktfkqrrikl gftqgdvgla
      361 mgklygndfs qttisrfeal nlsfknmckl kpllekwlnd aenlssdstl sspsalnspg
      421 lgveglnrrr kkrtsietni rvaleksfle nqkptsdeit miadqlnmek evirvwfcnr
      481 rqkekrinpp ssggtssspi kaifpcptsl vattpslvts saattltvnp vlpltspavt
      541 slsvtgttet tsnntatvis tappassavt spslspspsa sastseassa setsttqtts
      601 tplssplgts qvmvtasglq taaaaalqga aqlpanasla amaaaaglnp glmassqfaa
      661 ggallslnpg tlggalspal msnstlatiq alasggslpi tsldatgnlv fanaggtpni
      721 vtaplflnpq nlslltsnpv slvsaaaasa gasgpvaslh ttstsaesiq nslltvasas
      781 gatsttttas kaq
//
LOCUS       XP_053912492             790 aa            linear   VRT 09-MAR-2023
DEFINITION  POU domain, class 2, transcription factor 1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912492
VERSION     XP_053912492.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056517.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..790
                     /product="POU domain, class 2, transcription factor 1
                     isoform X2"
                     /calculated_mol_wt=80885
     Region          325..399
                     /region_name="POU"
                     /note="Found in Pit-Oct-Unc transcription factors;
                     smart00352"
                     /db_xref="CDD:197673"
     Region          427..483
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     Region          497..773
                     /region_name="POU2F1_C"
                     /note="POU domain, class 2, transcription factor 1
                     C-terminal; pfam19536"
                     /db_xref="CDD:437368"
     CDS             1..790
                     /gene="POU2F1"
                     /coded_by="XM_054056517.1:10..2382"
                     /db_xref="GeneID:104055978"
ORIGIN      
        1 madggaasqd essaaavaaa adsrmnnpse tskpsmesgd gntgtqtngl dfkkqpvpvg
       61 gaistaqaqa flghlhqvql agtslqaaaq slnvqsksne esgdsqqpsq psqqpsvqaa
      121 ipqtqlmlag gqitgvrftq vngskasyla ndgsiygsph rtltltpaqq qlllqqaqaq
      181 llaaavqhsa sqqhsaagat isasaatpmt qiplsqpiqi aqhlqqlqqq nlnlqqfvlv
      241 hpttnlqpaq fiisqtpqgq qgllqaqnll tqlpqqsqan llqsqpsitl asqpatptrt
      301 iaatpiqplp qsqstpkrid tpsleepsdl eeleqfaktf kqrriklgft qgdvglamgk
      361 lygndfsqtt isrfealnls fknmcklkpl lekwlndaen lssdstlssp salnspglgv
      421 eglnrrrkkr tsietnirva leksflenqk ptsdeitmia dqlnmekevi rvwfcnrrqk
      481 ekrinppssg gtssspikai fpcptslvat tpslvtssaa ttltvnpvlp ltspavtsls
      541 vtgttettsn ntatvistap passavtsps lspspsasas tseassaset sttqttstpl
      601 ssplgtsqvm vtasglqtaa aaalqgaaql panaslaama aaaglnpglm assqfaagga
      661 llslnpgtlg galspalmsn stlatiqala sggslpitsl datgnlvfan aggtpnivta
      721 plflnpqnls lltsnpvslv saaaasagas gpvaslhtts tsaesiqnsl ltvasasgat
      781 sttttaskaq
//
LOCUS       XP_053912493             781 aa            linear   VRT 09-MAR-2023
DEFINITION  POU domain, class 2, transcription factor 1 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053912493
VERSION     XP_053912493.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056518.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..781
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..781
                     /product="POU domain, class 2, transcription factor 1
                     isoform X3"
                     /calculated_mol_wt=80478
     Region          <175..>371
                     /region_name="PRK10263"
                     /note="DNA translocase FtsK; Provisional"
                     /db_xref="CDD:236669"
     Region          316..390
                     /region_name="POU"
                     /note="Found in Pit-Oct-Unc transcription factors;
                     smart00352"
                     /db_xref="CDD:197673"
     Region          418..474
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     Region          488..764
                     /region_name="POU2F1_C"
                     /note="POU domain, class 2, transcription factor 1
                     C-terminal; pfam19536"
                     /db_xref="CDD:437368"
     CDS             1..781
                     /gene="POU2F1"
                     /coded_by="XM_054056518.1:223..2568"
                     /db_xref="GeneID:104055978"
ORIGIN      
        1 mldcsdyvld srmnnpsets kpsmesgdgn tgtqtngldf kkqpvpvgga istaqaqafl
       61 ghlhqvqlag tslqaaaqsl nvqsksnees gdsqqpsqps qqpsvqaaip qtqlmlaggq
      121 itgvrftqvn gskasyland gsiygsphrt ltltpaqqql llqqaqaqll aaavqhsasq
      181 qhsaagatis asaatpmtqi plsqpiqiaq dlqhlqqlqq qnlnlqqfvl vhpttnlqpa
      241 qfiisqtpqg qqgllqaqnl ltqlpqqsqa nllqsqpsit lasqpatptr tiaatpiqpl
      301 pqsqstpkri dtpsleepsd leeleqfakt fkqrriklgf tqgdvglamg klygndfsqt
      361 tisrfealnl sfknmcklkp llekwlndae nlssdstlss psalnspglg veglnrrrkk
      421 rtsietnirv aleksflenq kptsdeitmi adqlnmekev irvwfcnrrq kekrinppss
      481 ggtssspika ifpcptslva ttpslvtssa attltvnpvl pltspavtsl svtgttetts
      541 nntatvista ppassavtsp slspspsasa stseassase tsttqttstp lssplgtsqv
      601 mvtasglqta aaaalqgaaq lpanaslaam aaaaglnpgl massqfaagg allslnpgtl
      661 ggalspalms nstlatiqal asggslpits ldatgnlvfa naggtpnivt aplflnpqnl
      721 slltsnpvsl vsaaaasaga sgpvaslhtt stsaesiqns lltvasasga tsttttaska
      781 q
//
LOCUS       XP_053912494             766 aa            linear   VRT 09-MAR-2023
DEFINITION  POU domain, class 2, transcription factor 1 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053912494
VERSION     XP_053912494.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056519.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..766
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..766
                     /product="POU domain, class 2, transcription factor 1
                     isoform X4"
                     /calculated_mol_wt=78333
     Region          301..375
                     /region_name="POU"
                     /note="Found in Pit-Oct-Unc transcription factors;
                     smart00352"
                     /db_xref="CDD:197673"
     Region          403..459
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     Region          473..749
                     /region_name="POU2F1_C"
                     /note="POU domain, class 2, transcription factor 1
                     C-terminal; pfam19536"
                     /db_xref="CDD:437368"
     CDS             1..766
                     /gene="POU2F1"
                     /coded_by="XM_054056519.1:10..2310"
                     /db_xref="GeneID:104055978"
ORIGIN      
        1 madggaasqd essaaavaaa adsrmnnpse tskpsmesgd gntgtqtngl dfkkqpvpvg
       61 gaistaqaqa flghlhqvql agtslqaaaq slnvqsksne esgdsqqpsq psqqpsvqaa
      121 ipqtqlmlag gqitgltltp aqqqlllqqa qaqllaaavq hsasqqhsaa gatisasaat
      181 pmtqiplsqp iqiaqdlqhl qqlqqqnlnl qqfvlvhptt nlqpaqfiis qtpqgqqgll
      241 qaqnlltqlp qqsqanllqs qpsitlasqp atptrtiaat piqplpqsqs tpkridtpsl
      301 eepsdleele qfaktfkqrr iklgftqgdv glamgklygn dfsqttisrf ealnlsfknm
      361 cklkpllekw lndaenlssd stlsspsaln spglgvegln rrrkkrtsie tnirvaleks
      421 flenqkptsd eitmiadqln mekevirvwf cnrrqkekri nppssggtss spikaifpcp
      481 tslvattpsl vtssaattlt vnpvlpltsp avtslsvtgt tettsnntat vistappass
      541 avtspslsps psasastsea ssasetsttq ttstplsspl gtsqvmvtas glqtaaaaal
      601 qgaaqlpana slaamaaaag lnpglmassq faaggallsl npgtlggals palmsnstla
      661 tiqalasggs lpitsldatg nlvfanaggt pnivtaplfl npqnlsllts npvslvsaaa
      721 asagasgpva slhttstsae siqnslltva sasgatsttt taskaq
//
LOCUS       XP_053912496             763 aa            linear   VRT 09-MAR-2023
DEFINITION  POU domain, class 2, transcription factor 1 isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053912496
VERSION     XP_053912496.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056521.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..763
                     /product="POU domain, class 2, transcription factor 1
                     isoform X5"
                     /calculated_mol_wt=77977
     Region          298..372
                     /region_name="POU"
                     /note="Found in Pit-Oct-Unc transcription factors;
                     smart00352"
                     /db_xref="CDD:197673"
     Region          400..456
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     Region          470..746
                     /region_name="POU2F1_C"
                     /note="POU domain, class 2, transcription factor 1
                     C-terminal; pfam19536"
                     /db_xref="CDD:437368"
     CDS             1..763
                     /gene="POU2F1"
                     /coded_by="XM_054056521.1:10..2301"
                     /db_xref="GeneID:104055978"
ORIGIN      
        1 madggaasqd essaaavaaa adsrmnnpse tskpsmesgd gntgtqtngl dfkkqpvpvg
       61 gaistaqaqa flghlhqvql agtslqaaaq slnvqsksne esgdsqqpsq psqqpsvqaa
      121 ipqtqlmlag gqitgltltp aqqqlllqqa qaqllaaavq hsasqqhsaa gatisasaat
      181 pmtqiplsqp iqiaqhlqql qqqnlnlqqf vlvhpttnlq paqfiisqtp qgqqgllqaq
      241 nlltqlpqqs qanllqsqps itlasqpatp trtiaatpiq plpqsqstpk ridtpsleep
      301 sdleeleqfa ktfkqrrikl gftqgdvgla mgklygndfs qttisrfeal nlsfknmckl
      361 kpllekwlnd aenlssdstl sspsalnspg lgveglnrrr kkrtsietni rvaleksfle
      421 nqkptsdeit miadqlnmek evirvwfcnr rqkekrinpp ssggtssspi kaifpcptsl
      481 vattpslvts saattltvnp vlpltspavt slsvtgttet tsnntatvis tappassavt
      541 spslspspsa sastseassa setsttqtts tplssplgts qvmvtasglq taaaaalqga
      601 aqlpanasla amaaaaglnp glmassqfaa ggallslnpg tlggalspal msnstlatiq
      661 alasggslpi tsldatgnlv fanaggtpni vtaplflnpq nlslltsnpv slvsaaaasa
      721 gasgpvaslh ttstsaesiq nslltvasas gatsttttas kaq
//
LOCUS       XP_009555474             754 aa            linear   VRT 09-MAR-2023
DEFINITION  POU domain, class 2, transcription factor 1 isoform X6 [Cuculus
            canorus].
ACCESSION   XP_009555474
VERSION     XP_009555474.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557179.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..754
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..754
                     /product="POU domain, class 2, transcription factor 1
                     isoform X6"
                     /calculated_mol_wt=77569
     Region          <148..>344
                     /region_name="PRK10263"
                     /note="DNA translocase FtsK; Provisional"
                     /db_xref="CDD:236669"
     Region          289..363
                     /region_name="POU"
                     /note="Found in Pit-Oct-Unc transcription factors;
                     smart00352"
                     /db_xref="CDD:197673"
     Region          391..447
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     Region          461..737
                     /region_name="POU2F1_C"
                     /note="POU domain, class 2, transcription factor 1
                     C-terminal; pfam19536"
                     /db_xref="CDD:437368"
     CDS             1..754
                     /gene="POU2F1"
                     /coded_by="XM_009557179.2:223..2487"
                     /db_xref="GeneID:104055978"
ORIGIN      
        1 mldcsdyvld srmnnpsets kpsmesgdgn tgtqtngldf kkqpvpvgga istaqaqafl
       61 ghlhqvqlag tslqaaaqsl nvqsksnees gdsqqpsqps qqpsvqaaip qtqlmlaggq
      121 itgltltpaq qqlllqqaqa qllaaavqhs asqqhsaaga tisasaatpm tqiplsqpiq
      181 iaqdlqhlqq lqqqnlnlqq fvlvhpttnl qpaqfiisqt pqgqqgllqa qnlltqlpqq
      241 sqanllqsqp sitlasqpat ptrtiaatpi qplpqsqstp kridtpslee psdleeleqf
      301 aktfkqrrik lgftqgdvgl amgklygndf sqttisrfea lnlsfknmck lkpllekwln
      361 daenlssdst lsspsalnsp glgveglnrr rkkrtsietn irvaleksfl enqkptsdei
      421 tmiadqlnme kevirvwfcn rrqkekrinp pssggtsssp ikaifpcpts lvattpslvt
      481 ssaattltvn pvlpltspav tslsvtgtte ttsnntatvi stappassav tspslspsps
      541 asastseass asetsttqtt stplssplgt sqvmvtasgl qtaaaaalqg aaqlpanasl
      601 aamaaaagln pglmassqfa aggallslnp gtlggalspa lmsnstlati qalasggslp
      661 itsldatgnl vfanaggtpn ivtaplflnp qnlslltsnp vslvsaaaas agasgpvasl
      721 httstsaesi qnslltvasa sgatstttta skaq
//
LOCUS       XP_053912497             726 aa            linear   VRT 09-MAR-2023
DEFINITION  POU domain, class 2, transcription factor 1 isoform X7 [Cuculus
            canorus].
ACCESSION   XP_053912497
VERSION     XP_053912497.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056522.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..726
                     /product="POU domain, class 2, transcription factor 1
                     isoform X7"
                     /calculated_mol_wt=74240
     Region          261..335
                     /region_name="POU"
                     /note="Found in Pit-Oct-Unc transcription factors;
                     smart00352"
                     /db_xref="CDD:197673"
     Region          363..419
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     Region          433..709
                     /region_name="POU2F1_C"
                     /note="POU domain, class 2, transcription factor 1
                     C-terminal; pfam19536"
                     /db_xref="CDD:437368"
     CDS             1..726
                     /gene="POU2F1"
                     /coded_by="XM_054056522.1:10..2190"
                     /db_xref="GeneID:104055978"
ORIGIN      
        1 madggaasqd essaaavaaa adsrmnnpse tskpsmesgd gntgtqtngl dfkkqpvpvg
       61 gaistaqaqa flghlhqvql agtslqaaaq slnvqltltp aqqqlllqqa qaqllaaavq
      121 hsasqqhsaa gatisasaat pmtqiplsqp iqiaqdlqhl qqlqqqnlnl qqfvlvhptt
      181 nlqpaqfiis qtpqgqqgll qaqnlltqlp qqsqanllqs qpsitlasqp atptrtiaat
      241 piqplpqsqs tpkridtpsl eepsdleele qfaktfkqrr iklgftqgdv glamgklygn
      301 dfsqttisrf ealnlsfknm cklkpllekw lndaenlssd stlsspsaln spglgvegln
      361 rrrkkrtsie tnirvaleks flenqkptsd eitmiadqln mekevirvwf cnrrqkekri
      421 nppssggtss spikaifpcp tslvattpsl vtssaattlt vnpvlpltsp avtslsvtgt
      481 tettsnntat vistappass avtspslsps psasastsea ssasetsttq ttstplsspl
      541 gtsqvmvtas glqtaaaaal qgaaqlpana slaamaaaag lnpglmassq faaggallsl
      601 npgtlggals palmsnstla tiqalasggs lpitsldatg nlvfanaggt pnivtaplfl
      661 npqnlsllts npvslvsaaa asagasgpva slhttstsae siqnslltva sasgatsttt
      721 taskaq
//
LOCUS       XP_053912498             706 aa            linear   VRT 09-MAR-2023
DEFINITION  POU domain, class 2, transcription factor 1 isoform X8 [Cuculus
            canorus].
ACCESSION   XP_053912498
VERSION     XP_053912498.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056523.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..706
                     /product="POU domain, class 2, transcription factor 1
                     isoform X8"
                     /calculated_mol_wt=72208
     Region          241..315
                     /region_name="POU"
                     /note="Found in Pit-Oct-Unc transcription factors;
                     smart00352"
                     /db_xref="CDD:197673"
     Region          343..399
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     Region          413..689
                     /region_name="POU2F1_C"
                     /note="POU domain, class 2, transcription factor 1
                     C-terminal; pfam19536"
                     /db_xref="CDD:437368"
     CDS             1..706
                     /gene="POU2F1"
                     /coded_by="XM_054056523.1:10..2130"
                     /db_xref="GeneID:104055978"
ORIGIN      
        1 madggaasqd essaaavaaa adsrmnnpse tskpsmesgd gntgtqtngl dfkkqpvpvg
       61 gaistaqaqa flghlhqvql agtslqaaaq slnvqsksne esgdsqqpsq psqqpsvqaa
      121 ipqtqlmlag gqitgdlqhl qqlqqqnlnl qqfvlvhptt nlqpaqfiis qtpqgqqgll
      181 qaqnlltqlp qqsqanllqs qpsitlasqp atptrtiaat piqplpqsqs tpkridtpsl
      241 eepsdleele qfaktfkqrr iklgftqgdv glamgklygn dfsqttisrf ealnlsfknm
      301 cklkpllekw lndaenlssd stlsspsaln spglgvegln rrrkkrtsie tnirvaleks
      361 flenqkptsd eitmiadqln mekevirvwf cnrrqkekri nppssggtss spikaifpcp
      421 tslvattpsl vtssaattlt vnpvlpltsp avtslsvtgt tettsnntat vistappass
      481 avtspslsps psasastsea ssasetsttq ttstplsspl gtsqvmvtas glqtaaaaal
      541 qgaaqlpana slaamaaaag lnpglmassq faaggallsl npgtlggals palmsnstla
      601 tiqalasggs lpitsldatg nlvfanaggt pnivtaplfl npqnlsllts npvslvsaaa
      661 asagasgpva slhttstsae siqnslltva sasgatsttt taskaq
//
LOCUS       XP_053912499             703 aa            linear   VRT 09-MAR-2023
DEFINITION  POU domain, class 2, transcription factor 1 isoform X9 [Cuculus
            canorus].
ACCESSION   XP_053912499
VERSION     XP_053912499.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056524.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..703
                     /product="POU domain, class 2, transcription factor 1
                     isoform X9"
                     /calculated_mol_wt=71852
     Region          238..312
                     /region_name="POU"
                     /note="Found in Pit-Oct-Unc transcription factors;
                     smart00352"
                     /db_xref="CDD:197673"
     Region          340..396
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     Region          410..686
                     /region_name="POU2F1_C"
                     /note="POU domain, class 2, transcription factor 1
                     C-terminal; pfam19536"
                     /db_xref="CDD:437368"
     CDS             1..703
                     /gene="POU2F1"
                     /coded_by="XM_054056524.1:10..2121"
                     /db_xref="GeneID:104055978"
ORIGIN      
        1 madggaasqd essaaavaaa adsrmnnpse tskpsmesgd gntgtqtngl dfkkqpvpvg
       61 gaistaqaqa flghlhqvql agtslqaaaq slnvqsksne esgdsqqpsq psqqpsvqaa
      121 ipqtqlmlag gqitghlqql qqqnlnlqqf vlvhpttnlq paqfiisqtp qgqqgllqaq
      181 nlltqlpqqs qanllqsqps itlasqpatp trtiaatpiq plpqsqstpk ridtpsleep
      241 sdleeleqfa ktfkqrrikl gftqgdvgla mgklygndfs qttisrfeal nlsfknmckl
      301 kpllekwlnd aenlssdstl sspsalnspg lgveglnrrr kkrtsietni rvaleksfle
      361 nqkptsdeit miadqlnmek evirvwfcnr rqkekrinpp ssggtssspi kaifpcptsl
      421 vattpslvts saattltvnp vlpltspavt slsvtgttet tsnntatvis tappassavt
      481 spslspspsa sastseassa setsttqtts tplssplgts qvmvtasglq taaaaalqga
      541 aqlpanasla amaaaaglnp glmassqfaa ggallslnpg tlggalspal msnstlatiq
      601 alasggslpi tsldatgnlv fanaggtpni vtaplflnpq nlslltsnpv slvsaaaasa
      661 gasgpvaslh ttstsaesiq nslltvasas gatsttttas kaq
//
LOCUS       XP_053912500             923 aa            linear   VRT 09-MAR-2023
DEFINITION  rho GTPase-activating protein 20 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912500
VERSION     XP_053912500.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056525.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..923
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..923
                     /product="rho GTPase-activating protein 20 isoform X1"
                     /calculated_mol_wt=102005
     Region          85..182
                     /region_name="PH_RARhoGAP"
                     /note="RA and RhoGAP domain-containing protein Pleckstrin
                     homology PH domain; cd13319"
                     /db_xref="CDD:270129"
     Region          196..312
                     /region_name="RA_RHG20"
                     /note="Ras-associating (RA) domain found in Rho
                     GTPase-activating protein 20 (RHG20) and similar proteins;
                     cd17115"
                     /db_xref="CDD:340635"
     Region          362..555
                     /region_name="RhoGAP_ARHGAP20"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain of ArhGAP20-like proteins. ArhGAP20,
                     also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a
                     RA, and a PH domain, and ANXL repeats. ArhGAP20 is
                     activated by Rap1 and induces...; cd04402"
                     /db_xref="CDD:239867"
     Site            order(399,435,439,508,511..512,537)
                     /site_type="other"
                     /note="putative GTPase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:239867"
     Site            399
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239867"
     CDS             1..923
                     /gene="ARHGAP20"
                     /coded_by="XM_054056525.1:98..2869"
                     /db_xref="GeneID:104055330"
ORIGIN      
        1 mdvmspqqeh lgpsrsssvs gesrgfaaad skkkmkslaq rrqsapslif vkalnrsrsv
       61 sregcfspis peacplvqsf mchnrtflld ghvqlktglq tqerhlflft dllvvaksnr
      121 shshfklkcq arlcemwtaf cteevcegst dpersfvlgw pttncvanfr saeqretwls
      181 flqsrireek ekdypksipl kiiakdvgtc aysktlsvtn gdtandvilm alqqlgvngs
      241 ekdyklwvis gredapypli gheypfgikm shirdamphg skhcacprql qgsflteqlp
      301 qelqcqfvlk psrlavcqql ndlgqksckr krsiinwafw rgpgthldna plsstsaapg
      361 klfgllltai ceddnlpkpl ldmlsllyqe gpstegifrr sgsaktckel kekldsgaev
      421 dlacesifvt aslfkdflrn ipgsilssql cdkwvsvmdq gnneekiksi qrlieqlpra
      481 nvvllryifg vlhgiemrse enqmnafnla iciapsllwp ptssspdies eftkkisslv
      541 qfltenccri fgdeitslfg eilmtckren gsdaaslhln dssydslene andeadssss
      601 dwiknrdqdn rsresvftls dgdseqtevd eiqskpkskq ltisvdvhrk fssqensenl
      661 csnalgfssa atsgalktlr rhrrssepai gllapsftri ggghekaark ascdvvlshe
      721 dedylcqlrs lqvegqklin qsliiginvg ksdntkqnie kkdsshclmp paleglnics
      781 gfsssslssp gtspsmssms sldsafsqfs dqsvftptet sspfdttfqs lkehedtatg
      841 aaddclvtpt rvppspqptd alaegdlmep nsrpaplkpt davdsylikp niqplplkvt
      901 arerfhdprs krrsrralql skv
//
LOCUS       XP_053912501             922 aa            linear   VRT 09-MAR-2023
DEFINITION  rho GTPase-activating protein 20 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912501
VERSION     XP_053912501.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056526.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..922
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..922
                     /product="rho GTPase-activating protein 20 isoform X2"
                     /calculated_mol_wt=101863
     Region          85..181
                     /region_name="PH_RARhoGAP"
                     /note="RA and RhoGAP domain-containing protein Pleckstrin
                     homology PH domain; cd13319"
                     /db_xref="CDD:270129"
     Region          195..311
                     /region_name="RA_RHG20"
                     /note="Ras-associating (RA) domain found in Rho
                     GTPase-activating protein 20 (RHG20) and similar proteins;
                     cd17115"
                     /db_xref="CDD:340635"
     Region          361..554
                     /region_name="RhoGAP_ARHGAP20"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain of ArhGAP20-like proteins. ArhGAP20,
                     also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a
                     RA, and a PH domain, and ANXL repeats. ArhGAP20 is
                     activated by Rap1 and induces...; cd04402"
                     /db_xref="CDD:239867"
     Site            order(398,434,438,507,510..511,536)
                     /site_type="other"
                     /note="putative GTPase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:239867"
     Site            398
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239867"
     CDS             1..922
                     /gene="ARHGAP20"
                     /coded_by="XM_054056526.1:98..2866"
                     /db_xref="GeneID:104055330"
ORIGIN      
        1 mdvmspqqeh lgpsrsssvs gesrgfaaad skkkmkslaq rrqsapslif vkalnrsrsv
       61 sregcfspis peacplvqsf mchnrtflld ghvqlktglq tqerhlflft dllvvaksks
      121 hshfklkcqa rlcemwtafc teevcegstd persfvlgwp ttncvanfrs aeqretwlsf
      181 lqsrireeke kdypksiplk iiakdvgtca ysktlsvtng dtandvilma lqqlgvngse
      241 kdyklwvisg redapyplig heypfgikms hirdamphgs khcacprqlq gsflteqlpq
      301 elqcqfvlkp srlavcqqln dlgqksckrk rsiinwafwr gpgthldnap lsstsaapgk
      361 lfgllltaic eddnlpkpll dmlsllyqeg pstegifrrs gsaktckelk ekldsgaevd
      421 lacesifvta slfkdflrni pgsilssqlc dkwvsvmdqg nneekiksiq rlieqlpran
      481 vvllryifgv lhgiemrsee nqmnafnlai ciapsllwpp tssspdiese ftkkisslvq
      541 fltenccrif gdeitslfge ilmtckreng sdaaslhlnd ssydslenea ndeadssssd
      601 wiknrdqdnr sresvftlsd gdseqtevde iqskpkskql tisvdvhrkf ssqensenlc
      661 snalgfssaa tsgalktlrr hrrssepaig llapsftrig gghekaarka scdvvlshed
      721 edylcqlrsl qvegqklinq sliiginvgk sdntkqniek kdsshclmpp aleglnicsg
      781 fsssslsspg tspsmssmss ldsafsqfsd qsvftptets spfdttfqsl kehedtatga
      841 addclvtptr vppspqptda laegdlmepn srpaplkptd avdsylikpn iqplplkvta
      901 rerfhdprsk rrsrralqls kv
//
LOCUS       XP_009564493             905 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich repeat-containing G-protein coupled receptor 5
            [Cuculus canorus].
ACCESSION   XP_009564493
VERSION     XP_009564493.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566198.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564493.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..905
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..905
                     /product="leucine-rich repeat-containing G-protein coupled
                     receptor 5"
                     /calculated_mol_wt=99723
     Region          32..>61
                     /region_name="LRRNT"
                     /note="Leucine rich repeat N-terminal domain; smart00013"
                     /db_xref="CDD:214470"
     Region          52..450
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          65..88
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          89..112
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          113..136
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          137..160
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          161..184
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          185..208
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          209..232
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          233..255
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          256..279
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          280..301
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          304..350
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          351..372
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          373..396
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          397..420
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          421..444
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          555..828
                     /region_name="7tmA_LGR5"
                     /note="leucine-rich repeats-containing G protein-coupled
                     receptor 5, member of the class A family of
                     seven-transmembrane G protein-coupled receptors; cd15363"
                     /db_xref="CDD:320485"
     Region          556..582
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320485"
     Region          589..614
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320485"
     Site            order(610,613..614,634..639,641..642,645,690,692..696,718,
                     721..723,725..727,729..730,776,779..780,782..783,786,
                     795..796,798..800,803,806..807)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:320485"
     Region          634..664
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320485"
     Region          676..698
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320485"
     Region          718..747
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320485"
     Region          756..786
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320485"
     Region          796..821
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320485"
     CDS             1..905
                     /gene="LGR5"
                     /coded_by="XM_009566198.2:150..2867"
                     /db_xref="GeneID:104063917"
ORIGIN      
        1 mamsrallll llllllcprr gargggqrpr gcpapcrceq egallradcs dlgltavpan
       61 lsiftsyldl smnnitklps npvhnlrfle elrlagnglt yipkgafagl fslkvlmlqn
      121 nqlrqvptea lqnlrslqsl rldanhinyv ppncfnglvs lrhlwlddns lteipvqafr
      181 slpalqamtl alnkihyipd yafgnlsslv vlhlhnnriy slgkkcfdgl hsletldlny
      241 nsldefptai rtltnlkelg fhsnniksip erafvgnpsl itihffdnpi qlvgksafqh
      301 lpelrtltln gasqitefpd ltgttslesl tltgaqitsl pksacdqlpn lqvldlsynl
      361 leglpcftac kklqkidlhh neigeikadt frqlvalrsl dlawnkikii hpsafsslps
      421 likldvssnl lssfpvtglh glthlkltgn halqslisse nfpelkviem pyayqccafg
      481 aseshykiss qwnrdennsi ddfhrkdagl lqipderdfe dffldfeedl kahhsvqcsp
      541 spgpfkpcdh lfgswlirig vwtivgltfi cnalvsatvf rsplymssik lligliaivn
      601 almglasgvl asvdastfgs faqygaqwes gigcqitgll sifaseasif lltlaalera
      661 fsvkhttkfe tkssiasvki aiffcfmlal liavtplltg seygisplcl plpfgeptam
      721 gymvalvlln slcflvmtia ytklyctlek geldniwdcs mvkhialllf tncilycpva
      781 flsfssllnl tfispeviks illvivplpa clnpllyilf nphfkedlgs lrkqtllwrr
      841 skhaslisvn sediekqscd stqalvtfts asisydmpts nslvpssyqm tescnlssva
      901 fvpcr
//
LOCUS       XP_009556088             264 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 122 [Cuculus canorus].
ACCESSION   XP_009556088
VERSION     XP_009556088.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557793.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556088.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..264
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..264
                     /product="coiled-coil domain-containing protein 122"
                     /calculated_mol_wt=31078
     Region          21..>258
                     /region_name="EnvC"
                     /note="Septal ring factor EnvC, activator of murein
                     hydrolases AmiA and AmiB [Cell cycle control, cell
                     division, chromosome partitioning]; COG4942"
                     /db_xref="CDD:443969"
     CDS             1..264
                     /gene="CCDC122"
                     /coded_by="XM_009557793.2:13..807"
                     /db_xref="GeneID:104056533"
ORIGIN      
        1 makqnspslt evlkqvaeqq hsqasemeks ktvlfqlqak lqelekemds vmletkttek
       61 eiylqddaie vtkyhcenle sqvralfsen lklrcdietv qeefemtfvr nneyrekika
      121 hkqlfwemen kmpvmielak kkavveelrt kkeelmcdlq npegsaikev qeeitllkte
      181 ittlkefisk ktdlleeekk mhsklrkeie vqnkrydail krlhcqlnkl hsnkrqwhwn
      241 iqqlekkaae lrnclaaael qsgi
//
LOCUS       XP_009554368             492 aa            linear   VRT 09-MAR-2023
DEFINITION  matrix metalloproteinase-27 [Cuculus canorus].
ACCESSION   XP_009554368
VERSION     XP_009554368.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556073.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554368.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..492
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..492
                     /product="matrix metalloproteinase-27"
                     /calculated_mol_wt=55837
     Region          52..112
                     /region_name="PG_binding_1"
                     /note="Putative peptidoglycan binding domain; pfam01471"
                     /db_xref="CDD:460223"
     Region          132..287
                     /region_name="Peptidase_M10"
                     /note="Matrixin; pfam00413"
                     /db_xref="CDD:425668"
     Region          303..492
                     /region_name="HX"
                     /note="Hemopexin-like repeats.; Hemopexin is a
                     heme-binding protein that transports heme to the liver.
                     Hemopexin-like repeats occur in vitronectin and some
                     matrix metalloproteinases family (matrixins). The HX
                     repeats of some matrixins bind tissue inhibitor of...;
                     cd00094"
                     /db_xref="CDD:238046"
     Site            order(313,315,357,359,404,406,453,455)
                     /site_type="metal-binding"
                     /note="Metal binding sites [ion binding]"
                     /db_xref="CDD:238046"
     CDS             1..492
                     /gene="LOC104054991"
                     /coded_by="XM_009556073.2:54..1532"
                     /db_xref="GeneID:104054991"
ORIGIN      
        1 mrmlermhkk qkadcsptrt gtrvrmkdls fllltcaavs nalpvhpeky sneedeklvq
       61 dylnqfytve ldpnqlgwki nddstaeklq kmqkffglkv tgkpdpetle mmkkprcgvp
      121 dvglygvtlp gwkkkkltyr ivnytpdmrk edvdkaiqka lkvwstvtpl iftrihegia
      181 dimiafgtka hghcpryfdg plgvlahafp pgngfggdah fdededwttg sagfnlflva
      241 ahefghalgl shsndqralm fpnyayvsps efplspddin giqsiygsrp napdkrpvtp
      301 tsprtcdski sfdavttlrr eviflkgrhl wrvypdnsev elelistfwp tlpsgiqaay
      361 enmkdqilff kgnkfwvisg yrvllgypkn istlgfpkgv kkidaavcnk ntgktdffvg
      421 dkywrydens qsmemgyprr tandfpgisq kvdavfqhkg lfyffhgskq wefdptakkv
      481 lreiksnswf nc
//
LOCUS       XP_053912503             548 aa            linear   VRT 09-MAR-2023
DEFINITION  eukaryotic translation initiation factor 3 subunit D isoform X1
            [Cuculus canorus].
ACCESSION   XP_053912503
VERSION     XP_053912503.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056528.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..548
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..548
                     /product="eukaryotic translation initiation factor 3
                     subunit D isoform X1"
                     /calculated_mol_wt=63858
     Region          4..522
                     /region_name="eIF-3_zeta"
                     /note="Eukaryotic translation initiation factor 3 subunit
                     7 (eIF-3); pfam05091"
                     /db_xref="CDD:461547"
     CDS             1..548
                     /gene="EIF3D"
                     /coded_by="XM_054056528.1:166..1812"
                     /db_xref="GeneID:104065900"
ORIGIN      
        1 makfvtpviq dnpsgwgpca vpeqfkdmpy qpfskgdrlg kvadwtgaty qdkrytnkys
       61 sqfgggsqya yfheedetsf qlvdtartqk tayqrnrmrf aqrnlrrdkd rrnmlqfsmq
      121 tlpksakqke rdrlrlqkkf qkqfgvrqkw dqksqqkprd ssvevrsdwe vkeemdfprl
      181 mkmrylevse pqdieccgal eyydkafdri ttrnekqlrs ikrifhtvtt tddpvirkla
      241 ktqgnvfatd ailatlmsct rsvyswdiiv qrvgsklffd krdnsdfdll tvsetanepp
      301 qeegnsfnsp rnlameatyi nhnfsqqclr mgkekykfpn pnpfveddmd knevasvayr
      361 yrrwklgddi dlivrcehdg vmtgangevs finiktlnew dsrycngvdw rqkldsqrga
      421 viatelknns yklarwtcca llagseylkl gyvsryhvkd ssrhvilgtq qfkpnefasq
      481 inlsienawg ilrcvidicm kldegkylil kdpnkqviri yslpdgtfss dedeedeeee
      541 eeeeeees
//
LOCUS       XP_053912504             547 aa            linear   VRT 09-MAR-2023
DEFINITION  eukaryotic translation initiation factor 3 subunit D isoform X2
            [Cuculus canorus].
ACCESSION   XP_053912504
VERSION     XP_053912504.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056529.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..547
                     /product="eukaryotic translation initiation factor 3
                     subunit D isoform X2"
                     /calculated_mol_wt=63730
     Region          4..521
                     /region_name="eIF-3_zeta"
                     /note="Eukaryotic translation initiation factor 3 subunit
                     7 (eIF-3); pfam05091"
                     /db_xref="CDD:461547"
     CDS             1..547
                     /gene="EIF3D"
                     /coded_by="XM_054056529.1:166..1809"
                     /db_xref="GeneID:104065900"
ORIGIN      
        1 makfvtpviq dnpsgwgpca vpeqfkdmpy qpfskgdrlg kvadwtgaty qdkrytnkys
       61 sqfgggsqya yfheedetsf qlvdtartqk tayqrnrmrf aqrnlrrdkd rrnmlqfsmq
      121 tlpksakqke rdrlrlqkkf qkqfgvrqkw dqksqkprds svevrsdwev keemdfprlm
      181 kmrylevsep qdieccgale yydkafdrit trnekqlrsi krifhtvttt ddpvirklak
      241 tqgnvfatda ilatlmsctr svyswdiivq rvgsklffdk rdnsdfdllt vsetaneppq
      301 eegnsfnspr nlameatyin hnfsqqclrm gkekykfpnp npfveddmdk nevasvayry
      361 rrwklgddid livrcehdgv mtgangevsf iniktlnewd srycngvdwr qkldsqrgav
      421 iatelknnsy klarwtccal lagseylklg yvsryhvkds srhvilgtqq fkpnefasqi
      481 nlsienawgi lrcvidicmk ldegkylilk dpnkqviriy slpdgtfssd edeedeeeee
      541 eeeeees
//
LOCUS       XP_053912505             313 aa            linear   VRT 09-MAR-2023
DEFINITION  protein sprouty homolog 2 [Cuculus canorus].
ACCESSION   XP_053912505
VERSION     XP_053912505.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056530.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..313
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..313
                     /product="protein sprouty homolog 2"
                     /calculated_mol_wt=34533
     Region          181..282
                     /region_name="Sprouty"
                     /note="Sprouty protein (Spry); pfam05210"
                     /db_xref="CDD:461589"
     CDS             1..313
                     /gene="SPRY2"
                     /coded_by="XM_054056530.1:840..1781"
                     /db_xref="GeneID:104067452"
ORIGIN      
        1 metrtqhgsg sqallqarrd sgrphgepdl rdvlmqqvhv lsldqirair ntneytegpt
       61 vaprpgvkst prlatqpkte rphglpehrh fsriqhtqth tsprvplsrs vstvstgsrs
      121 strtstssns seqrllgsss gpvadgivrm qpkselksne lkplskedlg ahsyrcedcg
      181 kckckectyp rtlpscwicd kqclcsaqnv vdygtcvccv kglfyhcsnd dedncadnpc
      241 scsqshcctr wstmgvvslf lpclwcylpa kgclklcqgc ydrvnrpgcr ckhsntvcck
      301 vpsvpprnfe kpt
//
LOCUS       XP_053912506             313 aa            linear   VRT 09-MAR-2023
DEFINITION  protein sprouty homolog 2 [Cuculus canorus].
ACCESSION   XP_053912506
VERSION     XP_053912506.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056531.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..313
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..313
                     /product="protein sprouty homolog 2"
                     /calculated_mol_wt=34533
     Region          181..282
                     /region_name="Sprouty"
                     /note="Sprouty protein (Spry); pfam05210"
                     /db_xref="CDD:461589"
     CDS             1..313
                     /gene="SPRY2"
                     /coded_by="XM_054056531.1:187..1128"
                     /db_xref="GeneID:104067452"
ORIGIN      
        1 metrtqhgsg sqallqarrd sgrphgepdl rdvlmqqvhv lsldqirair ntneytegpt
       61 vaprpgvkst prlatqpkte rphglpehrh fsriqhtqth tsprvplsrs vstvstgsrs
      121 strtstssns seqrllgsss gpvadgivrm qpkselksne lkplskedlg ahsyrcedcg
      181 kckckectyp rtlpscwicd kqclcsaqnv vdygtcvccv kglfyhcsnd dedncadnpc
      241 scsqshcctr wstmgvvslf lpclwcylpa kgclklcqgc ydrvnrpgcr ckhsntvcck
      301 vpsvpprnfe kpt
//
LOCUS       XP_053912507             313 aa            linear   VRT 09-MAR-2023
DEFINITION  protein sprouty homolog 2 [Cuculus canorus].
ACCESSION   XP_053912507
VERSION     XP_053912507.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056532.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..313
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..313
                     /product="protein sprouty homolog 2"
                     /calculated_mol_wt=34533
     Region          181..282
                     /region_name="Sprouty"
                     /note="Sprouty protein (Spry); pfam05210"
                     /db_xref="CDD:461589"
     CDS             1..313
                     /gene="SPRY2"
                     /coded_by="XM_054056532.1:183..1124"
                     /db_xref="GeneID:104067452"
ORIGIN      
        1 metrtqhgsg sqallqarrd sgrphgepdl rdvlmqqvhv lsldqirair ntneytegpt
       61 vaprpgvkst prlatqpkte rphglpehrh fsriqhtqth tsprvplsrs vstvstgsrs
      121 strtstssns seqrllgsss gpvadgivrm qpkselksne lkplskedlg ahsyrcedcg
      181 kckckectyp rtlpscwicd kqclcsaqnv vdygtcvccv kglfyhcsnd dedncadnpc
      241 scsqshcctr wstmgvvslf lpclwcylpa kgclklcqgc ydrvnrpgcr ckhsntvcck
      301 vpsvpprnfe kpt
//
LOCUS       XP_053912509            4763 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase MYCBP2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912509
VERSION     XP_053912509.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056534.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4763
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..4763
                     /product="E3 ubiquitin-protein ligase MYCBP2 isoform X1"
                     /calculated_mol_wt=523042
     Region          <505..690
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          <912..996
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          1206..1356
                     /region_name="PHR"
                     /note="PHR domain; pfam08005"
                     /db_xref="CDD:462339"
     Region          1697..1854
                     /region_name="PHR"
                     /note="PHR domain; pfam08005"
                     /db_xref="CDD:462339"
     Region          <2365..2416
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          2448..2510
                     /region_name="SH3_3"
                     /note="Bacterial SH3 domain; pfam08239"
                     /db_xref="CDD:462405"
     Region          4344..4392
                     /region_name="Bbox2_MYCBP2"
                     /note="B-box-type 2 zinc finger found in Myc-binding
                     protein 2 (MYCBP2) and similar proteins; cd19799"
                     /db_xref="CDD:380857"
     Region          4510..4564
                     /region_name="RING-H2_PHR"
                     /note="RING finger, H2 subclass, found in the PHR
                     (Pam/Highwire/RPM-1) protein family; cd16463"
                     /db_xref="CDD:438126"
     CDS             1..4763
                     /gene="MYCBP2"
                     /coded_by="XM_054056534.1:10..14301"
                     /db_xref="GeneID:104064920"
ORIGIN      
        1 msaaaaaaga eggfsssssc rmgpeegsag avalgcrgry qlllsgkala eryrriytaa
       61 lsdrelgshp grskklfskk klkrkqktkl kvktrnkten lestitipdi rlhsnpsafn
      121 vycnvrhcvl ewqkkeasvs lasknsvqsg dsdsdeeees keppiklpki ievglcevfe
      181 liketrfshp slclrslqal lnvlqgqqpe glqseppevl eslfqlllei tvrstgmnds
      241 tgqsltalsc aclfslvaaw getgrtlqai sailtnngsh acqtiqvpti lnslqrsvqa
      301 vlvgkiqiqd wfsngikkaa lmhkwplkei svdeddqcll qsdgfflyll ckdglykigs
      361 gysgtvrghi ynstsriknr kekkswlgya qgyllyrdan shsmtairin petleqdgtv
      421 alpdchtegq nilftdgeyi nqiaasrddg fvvrifatst epvlqqelql klarkclhac
      481 gislfdlekd lhiistgfde esavlgagre falmktasgk myytgkyqsl gikqggpsag
      541 kwvelpvtks pkiiqfsvgh dgshallvae dgsifftgsa skgedgestk srrqskpykp
      601 kkiikmegki vistacnngs ssviskdgel ymfgkdaiys dstslvtdlk ghfvtqvamg
      661 kahtcvlmkn gevwtfgvnn kgqcgretgs msqggkgfgv enmatamded leeelddkde
      721 ksmmcppgmh kwkleqcmvc tvcgdctgyg ascvssgrpd rvpggicgcg sgesgcavcg
      781 cckacareld gqearqrgil davkemipld lllavpvpgv nieehlqlrq eekrqrvnrr
      841 hrleegrgpl vfpgpifmnh reqalarirp hpaqlkhkrd khkdgsgerg ekdaskitty
      901 ppgavrfdce lravqvscgf hhsvvlmeng dvytfgygqh gqlghgdvns rgcptlvqal
      961 pgpstqvtag snhtaillmd gqvftfgsfs kgqlgrpild mpywnakpap mpnigskygr
     1021 katwigasgd qtflrideal inshvlatse ifasrhiigl vpasiseppp fkcllinkvd
     1081 gscktfndse qedlqgsgvc ldpvydviwr frpsarelws ynavvadsrl psapdmqsrc
     1141 silspelalp tgskalttrs haalhilgcl dtlaamqdlk mgvanteeet qavmkvyske
     1201 dysvvnrfes hgggwgysah sveairfcad tdillgglgl fggrgeytak iklfelgpdg
     1261 gdhetdgdll aetdvlaydc aarekyammf depvllqagw wyvawarvsg pssdcgshgq
     1321 asittddgvv fqfksskksn ngtdvnagqi pqllyrlpts dgsaskgkqq tsepvhilkr
     1381 sfartvsvec fesllsilhw swttlvlgve elrglkgfqy tatlldlerl rfvgtcclrl
     1441 lrvytceiyp isatakavve etskladcig ktrtllrkil segvdhcmvk ldndpqgyls
     1501 qplslleavl qechntftac fhsfyptpal qwaclcdlln cldqdiqean fktsssrlla
     1561 avmsalchts vkltsifpia ydgeallrsm vkqvstends alahrfpllv ahmeklsqse
     1621 enisgmtsfr evlekmlviv vlpvrnslrr enelfsshlv sntcgllasi vseltasalg
     1681 sevdglnslh svkstpnrft ktsqgrswnt gngspdaicf svdkpgvvvv gfsvyggggi
     1741 heyelevlvd dsdhtgdsth shrwtslelv kgtyttddsp sdiaeirldk vvplkenvky
     1801 avrlrnygsr tangdggmtt vqcpdgvtft fstcslssng tnqtrgqipq ilyyrseydg
     1861 dlqsqllnka needkncsra lsvvsavvra akdllhrala vdaedipell sssslfsmll
     1921 pliiayigpv aaaipkvave vfglvqqllp svavlnqkya ppafnpnqst dsttgnqpeq
     1981 glsacttsnh yavvesehpy kpacvthykv tfpecvrwit iefdtqcgta qsedvlrlli
     2041 pvriaqslgf gpkhasvhen lnswielkkf sgssgwptmv lvlpgnealf sletasdyvk
     2101 dekacfygfk cyaigyefsp gsdegiiqle kelanlggsc aaalmkkdla lpiagnefee
     2161 dleileeaal qvckshsgil gkglalshsp tilealegsl plqvqsneqs fledfiacvp
     2221 gssggrlarw lqpdsyadpq ktslilnkdd ircgwptvit vqtkdqygdv vhvpnmkvev
     2281 kaipvsqkkt slqqeqvkkv qripgspata aspsgdmtfg glpspkldss yepmivkear
     2341 yiaitmmkay enysfeelrf asptpkrpse nmlirvnndg tycanwtpga vglytihvti
     2401 dgieidagle vkvkdppkgm ippgtqlikp kaepqpnkvr kfvakdsagl rirshpslqs
     2461 eqigivkvng sitfideihn ddgvwlrlnd etikkyvpnm ngyteawcls fnqhlgksll
     2521 vpvdnvfnas qgvrdldffs wtskalppke srsntddffk dlnshcpqea vmqeqdmpfl
     2581 rggpgvykvv ktgpsghnir scpnlrgipi gmlvlgnkvk avgevtnseg twvqmdknsm
     2641 vefcesdege awslardrgg nqylrhedeq vlleqnvqtp ppspfsiqaf skgtscsngq
     2701 gfdyglgnnk gdqlsailns iqsrpnlpap sifdqaakpp sslvhspfvf gqplsfqqpq
     2761 pqlqkspscc lasreriykt sdvagpasai sslshklkgd rmnftgaarp ispagksdms
     2821 srhrtdsrsp kldvrmnraa adqkkprnte glsaseslll ksdaaklrsd shsrslspnh
     2881 ntlqtlktdg rtttglraes pgpgtrsssp ktktltavrs gassprsssp hdkslpqkap
     2941 spvktkldpp rersksdsyt ldpdtlrkkk vplteplrgr stspkpkina kdgkpvtete
     3001 nrapsphvvq enlhsevvev ctsstlktds itdttcednt efrslddgsn kvhfsigkap
     3061 lkdeqdmras pkvsrkcagr htrpkkekss flfkgdgskp vepakqamsp svaecaravf
     3121 aaflwhegiv hdamacssfl kfnpelskeh apirssltqq paeeketklk nrhsleissa
     3181 lnmfnisphg pdiskmgsin knkvlsmlke pplhekcedg ktettsfets shhtmksksp
     3241 lpltlqhlva fwedislati kaasqnmifp spgscavlkk kendkdnkka kkekkkkekv
     3301 etrprgnlfg emaqlavggp ekdticelcg eshpypvtyh mrqahpgcgr yaggqgynsi
     3361 ghfcggwagn cgdggiggst wylvcdrcre kylrekqaaa rekikqsrrk pmqvktpral
     3421 ptmeahqvik analyllsls saaepsilcy hpakafqsql psvkegised fpikmpclyl
     3481 qtlarhhhen fvgyqddnlf qdemrylrst svpapyisvt pdaspnvfee pesnmksmpp
     3541 sletspitdt dlakrtvfqr sysvvaseyd kqhsilparv kaiprrrvns gdaevgssll
     3601 rhpspelsrl isahsslskg ernfqwpvla fviqhhdleg leiamkqalr ksacrvfame
     3661 afnwllcnvi qttslhdilw hfvasltpap vepeeeedee nksnkenaeq ekdtrvcehp
     3721 lsdiviagea ahplphtfhr llqtisdlmm slpsgsalqq malrcwslkf kqsdhqflhq
     3781 snvfhhinni lsksddgdse esfsisiqsg fevmnqelci vvclkdltsi vdiktssrpa
     3841 migsltdgst etfwesgded knktknitin cvkginaryv cvhvdnsrdl gnkvtsmtfl
     3901 sgkavedlcr ikqvdldsrh igwvtselpg gdnhiikiel kgpentlrvr qvkilgwkdg
     3961 esikiagqis angaqqrnce setlrvfrli tsqvfgklis gdaeptpeqe ekallsspeg
     4021 eekvhnatsd adlkehmvgi ifsrskltnl qkqvcahivq airmeatrvr eewehaissk
     4081 enansqpnde dassdaycfe llsmvlalsg snvgrqylaq qltllqdlfs llhtasprvq
     4141 rqvtsllrrv lpevtpsrla siigvkslpp adisdiihst ekgdwnklgi ldmflgciak
     4201 altvqlkakg ttitgtagtt vgkgvttvtl pmifnssyir rgeshwwmkg stptqiseii
     4261 iklvkdmaag hlseawsrvt knaiaetiia ltkmeeeyrs pvrciattrl wlalaslcvl
     4321 dqdhvdrlss grwmgkdgqq kqmpmcdnhd dgetaaiilc nvcgnlctdc drflhlhrrt
     4381 kthqrqvfke eeeaikvdlh egcgrtklfw lmaladsktm kamvefreqt gkpttsssea
     4441 crfcgcrsgt elsavgsvcs dtdcqeyaki acskthacgh pcggvkneeh clpclhgcdk
     4501 nattlkqdad dmcmicftea lsaapaiqld cshvfhlqcc qrvlenrwlg pritfgfmsc
     4561 picknkinht vlkdlldpik elyedvrrka lmrleyeglh kseaittpgv rfyndpagfa
     4621 mnryayyvcy kckkayfgge arcdaeagqg ddydprelic gacsdvsraq mcpkhgtdfl
     4681 eykcryccsv avffcfgtth fcnachddfq rmtsipkeel phcpagpkgk qlegtecplh
     4741 vvhpptgeef algcgvcrna htf
//
LOCUS       XP_053912510            4737 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase MYCBP2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912510
VERSION     XP_053912510.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056535.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4737
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..4737
                     /product="E3 ubiquitin-protein ligase MYCBP2 isoform X2"
                     /calculated_mol_wt=520322
     Region          <505..690
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          <912..996
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          1206..1356
                     /region_name="PHR"
                     /note="PHR domain; pfam08005"
                     /db_xref="CDD:462339"
     Region          1697..1854
                     /region_name="PHR"
                     /note="PHR domain; pfam08005"
                     /db_xref="CDD:462339"
     Region          <2365..2416
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          2448..2510
                     /region_name="SH3_3"
                     /note="Bacterial SH3 domain; pfam08239"
                     /db_xref="CDD:462405"
     Region          4318..4366
                     /region_name="Bbox2_MYCBP2"
                     /note="B-box-type 2 zinc finger found in Myc-binding
                     protein 2 (MYCBP2) and similar proteins; cd19799"
                     /db_xref="CDD:380857"
     Region          4484..4538
                     /region_name="RING-H2_PHR"
                     /note="RING finger, H2 subclass, found in the PHR
                     (Pam/Highwire/RPM-1) protein family; cd16463"
                     /db_xref="CDD:438126"
     CDS             1..4737
                     /gene="MYCBP2"
                     /coded_by="XM_054056535.1:10..14223"
                     /db_xref="GeneID:104064920"
ORIGIN      
        1 msaaaaaaga eggfsssssc rmgpeegsag avalgcrgry qlllsgkala eryrriytaa
       61 lsdrelgshp grskklfskk klkrkqktkl kvktrnkten lestitipdi rlhsnpsafn
      121 vycnvrhcvl ewqkkeasvs lasknsvqsg dsdsdeeees keppiklpki ievglcevfe
      181 liketrfshp slclrslqal lnvlqgqqpe glqseppevl eslfqlllei tvrstgmnds
      241 tgqsltalsc aclfslvaaw getgrtlqai sailtnngsh acqtiqvpti lnslqrsvqa
      301 vlvgkiqiqd wfsngikkaa lmhkwplkei svdeddqcll qsdgfflyll ckdglykigs
      361 gysgtvrghi ynstsriknr kekkswlgya qgyllyrdan shsmtairin petleqdgtv
      421 alpdchtegq nilftdgeyi nqiaasrddg fvvrifatst epvlqqelql klarkclhac
      481 gislfdlekd lhiistgfde esavlgagre falmktasgk myytgkyqsl gikqggpsag
      541 kwvelpvtks pkiiqfsvgh dgshallvae dgsifftgsa skgedgestk srrqskpykp
      601 kkiikmegki vistacnngs ssviskdgel ymfgkdaiys dstslvtdlk ghfvtqvamg
      661 kahtcvlmkn gevwtfgvnn kgqcgretgs msqggkgfgv enmatamded leeelddkde
      721 ksmmcppgmh kwkleqcmvc tvcgdctgyg ascvssgrpd rvpggicgcg sgesgcavcg
      781 cckacareld gqearqrgil davkemipld lllavpvpgv nieehlqlrq eekrqrvnrr
      841 hrleegrgpl vfpgpifmnh reqalarirp hpaqlkhkrd khkdgsgerg ekdaskitty
      901 ppgavrfdce lravqvscgf hhsvvlmeng dvytfgygqh gqlghgdvns rgcptlvqal
      961 pgpstqvtag snhtaillmd gqvftfgsfs kgqlgrpild mpywnakpap mpnigskygr
     1021 katwigasgd qtflrideal inshvlatse ifasrhiigl vpasiseppp fkcllinkvd
     1081 gscktfndse qedlqgsgvc ldpvydviwr frpsarelws ynavvadsrl psapdmqsrc
     1141 silspelalp tgskalttrs haalhilgcl dtlaamqdlk mgvanteeet qavmkvyske
     1201 dysvvnrfes hgggwgysah sveairfcad tdillgglgl fggrgeytak iklfelgpdg
     1261 gdhetdgdll aetdvlaydc aarekyammf depvllqagw wyvawarvsg pssdcgshgq
     1321 asittddgvv fqfksskksn ngtdvnagqi pqllyrlpts dgsaskgkqq tsepvhilkr
     1381 sfartvsvec fesllsilhw swttlvlgve elrglkgfqy tatlldlerl rfvgtcclrl
     1441 lrvytceiyp isatakavve etskladcig ktrtllrkil segvdhcmvk ldndpqgyls
     1501 qplslleavl qechntftac fhsfyptpal qwaclcdlln cldqdiqean fktsssrlla
     1561 avmsalchts vkltsifpia ydgeallrsm vkqvstends alahrfpllv ahmeklsqse
     1621 enisgmtsfr evlekmlviv vlpvrnslrr enelfsshlv sntcgllasi vseltasalg
     1681 sevdglnslh svkstpnrft ktsqgrswnt gngspdaicf svdkpgvvvv gfsvyggggi
     1741 heyelevlvd dsdhtgdsth shrwtslelv kgtyttddsp sdiaeirldk vvplkenvky
     1801 avrlrnygsr tangdggmtt vqcpdgvtft fstcslssng tnqtrgqipq ilyyrseydg
     1861 dlqsqllnka needkncsra lsvvsavvra akdllhrala vdaedipell sssslfsmll
     1921 pliiayigpv aaaipkvave vfglvqqllp svavlnqkya ppafnpnqst dsttgnqpeq
     1981 glsacttsnh yavvesehpy kpacvthykv tfpecvrwit iefdtqcgta qsedvlrlli
     2041 pvriaqslgf gpkhasvhen lnswielkkf sgssgwptmv lvlpgnealf sletasdyvk
     2101 dekacfygfk cyaigyefsp gsdegiiqle kelanlggsc aaalmkkdla lpiagnefee
     2161 dleileeaal qvckshsgil gkglalshsp tilealegsl plqvqsneqs fledfiacvp
     2221 gssggrlarw lqpdsyadpq ktslilnkdd ircgwptvit vqtkdqygdv vhvpnmkvev
     2281 kaipvsqkkt slqqeqvkkv qripgspata aspsgdmtfg glpspkldss yepmivkear
     2341 yiaitmmkay enysfeelrf asptpkrpse nmlirvnndg tycanwtpga vglytihvti
     2401 dgieidagle vkvkdppkgm ippgtqlikp kaepqpnkvr kfvakdsagl rirshpslqs
     2461 eqigivkvng sitfideihn ddgvwlrlnd etikkyvpnm ngyteawcls fnqhlgksll
     2521 vpvdnvfnas qgvrdldffs wtskalppke srsntddffk dlnshcpqea vmqeqdmpfl
     2581 rggpgvykvv ktgpsghnir scpnlrgipi gmlvlgnkvk avgevtnseg twvqmdknsm
     2641 vefcesdege awslardrgg nqylrhedeq vlleqnvqtp ppspfsiqaf skgtscsngq
     2701 gfdyglgnnk vltvlpttgd qlsailnsiq srpnlpapsi fdqaakppss lvhspfvfgq
     2761 plsfqqpqpq lqsdrmnftg aarpispagk sdmssrhrtd srspkldvrm nraaadqkkp
     2821 rnteglsase slllksdaak lrsdshsrsl spnhntlqtl ktdgrtttgl raespgpgtr
     2881 ssspktktlt avrsgasspr sssphdkslp qkapspvktk ldpprersks dsytldpdtl
     2941 rkkkvpltep lrgrstspkp kinakdgkpv tetenrapsp hvvqenlhse vvevctsstl
     3001 ktdsitdttc edntefrsld dgsnkvhfsi gkaplkdeqd mraspkvsrk cagrhtrpkk
     3061 ekssflfkgd gskpvepakq amspsvaeca ravfaaflwh egivhdamac ssflkfnpel
     3121 skehapirss ltqqpaeeke tklknrhsle issalnmfni sphgpdiskm gsinknkvls
     3181 mlkepplhek cedgktetts fetsshhtmk sksplpltlq hlvafwedis latikaasqn
     3241 mifpspgsca vlkkkendkd nkkakkekkk kekvetrprg nlfgemaqla vggpekdtic
     3301 elcgeshpyp vtyhmrqahp gcgryaggqg ynsighfcgg wagncgdggi ggstwylvcd
     3361 rcrekylrek qaaarekikq srrkpmqvkt pralptmeah qvikanalyl lslssaaeps
     3421 ilcyhpakaf qsqlpsvkeg isedfpikmp clylqtlarh hhenfvgyqd dnlfqdemry
     3481 lrstsvpapy isvtpdaspn vfeepesnmk smppsletsp itdtdlakrt vfqrsysvva
     3541 seydkqhsil parvkaiprr rvnsgdaevg ssllrhpspe lsrlisahss lskgernfqw
     3601 pvlafviqhh dlegleiamk qalrksacrv fameafnwll cnviqttslh dilwhfvasl
     3661 tpapvepeee edeenksnke naeqekdtrv cehplsdivi ageaahplph tfhrllqtis
     3721 dlmmslpsgs alqqmalrcw slkfkqsdhq flhqsnvfhh innilsksdd gdseesfsis
     3781 iqsgfevmnq elcivvclkd ltsivdikts srpamigslt dgstetfwes gdedknktkn
     3841 itincvkgin aryvcvhvdn srdlgnkvts mtflsgkave dlcrikqvdl dsrhigwvts
     3901 elpggdnhii kielkgpent lrvrqvkilg wkdgesikia gqisangaqq rncesetlrv
     3961 frlitsqvfg klisgdaept peqeekalls spegeekvhn atsdadlkeh mvgiifsrsk
     4021 ltnlqkqvca hivqairmea trvreeweha isskenansq pndedassda ycfellsmvl
     4081 alsgsnvgrq ylaqqltllq dlfsllhtas prvqrqvtsl lrrvlpevtp srlasiigvk
     4141 slppadisdi ihstekgdwn klgildmflg ciakaltvql kakgttitgt agttvgkgvt
     4201 tvtlpmifns syirrgeshw wmkgstptqi seiiiklvkd maaghlseaw srvtknaiae
     4261 tiialtkmee eyrspvrcia ttrlwlalas lcvldqdhvd rlssgrwmgk dgqqkqmpmc
     4321 dnhddgetaa iilcnvcgnl ctdcdrflhl hrrtkthqrq vfkeeeeaik vdlhegcgrt
     4381 klfwlmalad sktmkamvef reqtgkptts sseacrfcgc rsgtelsavg svcsdtdcqe
     4441 yakiacskth acghpcggvk neehclpclh gcdknattlk qdaddmcmic ftealsaapa
     4501 iqldcshvfh lqccqrvlen rwlgpritfg fmscpicknk inhtvlkdll dpikelyedv
     4561 rrkalmrley eglhkseait tpgvrfyndp agfamnryay yvcykckkay fggearcdae
     4621 agqgddydpr elicgacsdv sraqmcpkhg tdfleykcry ccsvavffcf gtthfcnach
     4681 ddfqrmtsip keelphcpag pkgkqlegte cplhvvhppt geefalgcgv crnahtf
//
LOCUS       XP_053912511            4735 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase MYCBP2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912511
VERSION     XP_053912511.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056536.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4735
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..4735
                     /product="E3 ubiquitin-protein ligase MYCBP2 isoform X3"
                     /calculated_mol_wt=519663
     Region          562..960
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          1170..1320
                     /region_name="PHR"
                     /note="PHR domain; pfam08005"
                     /db_xref="CDD:462339"
     Region          1661..1818
                     /region_name="PHR"
                     /note="PHR domain; pfam08005"
                     /db_xref="CDD:462339"
     Region          <2329..2380
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          2412..2474
                     /region_name="SH3_3"
                     /note="Bacterial SH3 domain; pfam08239"
                     /db_xref="CDD:462405"
     Region          4316..4364
                     /region_name="Bbox2_MYCBP2"
                     /note="B-box-type 2 zinc finger found in Myc-binding
                     protein 2 (MYCBP2) and similar proteins; cd19799"
                     /db_xref="CDD:380857"
     Region          4482..4536
                     /region_name="RING-H2_PHR"
                     /note="RING finger, H2 subclass, found in the PHR
                     (Pam/Highwire/RPM-1) protein family; cd16463"
                     /db_xref="CDD:438126"
     CDS             1..4735
                     /gene="MYCBP2"
                     /coded_by="XM_054056536.1:10..14217"
                     /db_xref="GeneID:104064920"
ORIGIN      
        1 msaaaaaaga eggfsssssc rmgpeegsag avalgcrgry qlllsgkala eryrriytaa
       61 lsdrelgshp grskklfskk klkrkqktkl kvktrnkten lestitipdi rlhsnpsafn
      121 vycnvrhcvl ewqkkeasvs lasknsvqsg dsdsdeeees keppiklpki ievglcevfe
      181 liketrfshp slclrslqal lnvlqgqqpe glqseppevl eslfqlllei tvrstgmnds
      241 tgqsltalsc aclfslvaaw getgrtlqai sailtnngsh acqtiqvpti lnslqrsvqa
      301 vlvgkiqiqd wfsngikkaa lmhkwplkei svdeddqcll qsdgfflyll ckdglykigs
      361 gysgtvrghi ynstsriknr kekkswlgya qgyllyrdan shsmtairin petleqdgtv
      421 alpdchtegq nilftdgeyi nqiaasrddg fvvrifatst epvlqqelql klarkclhac
      481 gislfdlekd lhiistgfde esavlgagre falmktasgk myytgkyqsl gikqggpsag
      541 kwvelpvtks pkiiqfsvgh dgshallvae dgsifftgsa skgedgestk srrqskpykp
      601 kkiikmegki vistacnngs ssviskdgel ymfgkdaiys dstslvtdlk ghfvtqvamg
      661 kahtcvlmkn gevwtfgvnn kgqcgretgs msqggkgfgv enmatamded leeelddkde
      721 ksmmcppgmh kwkleqcmvc tvcgdctgyg ascvssgrpd rvpggicgcg sgesgcavcg
      781 cckacareld gqearqrgil davkemipld lllavpvpgv nieehlqlrq eekrqrvnrr
      841 hrleegrdgs gergekdask ittyppgavr fdcelravqv scgfhhsvvl mengdvytfg
      901 ygqhgqlghg dvnsrgcptl vqalpgpstq vtagsnhtai llmdgqvftf gsfskgqlgr
      961 pildmpywna kpapmpnigs kygrkatwig asgdqtflri dealinshvl atseifasrh
     1021 iiglvpasis epppfkclli nkvdgscktf ndseqedlqg sgvcldpvyd viwrfrpsar
     1081 elwsynavva dsrlpsapdm qsrcsilspe lalptgskal ttrshaalhi lgcldtlaam
     1141 qdlkmgvant eeetqavmkv yskedysvvn rfeshgggwg ysahsveair fcadtdillg
     1201 glglfggrge ytakiklfel gpdggdhetd gdllaetdvl aydcaareky ammfdepvll
     1261 qagwwyvawa rvsgpssdcg shgqasittd dgvvfqfkss kksnngtdvn agqipqllyr
     1321 lptsdgsask gkqqtsepvh ilkrsfartv svecfeslls ilhwswttlv lgveelrglk
     1381 gfqytatlld lerlrfvgtc clrllrvytc eiypisatak avveetskla dcigktrtll
     1441 rkilsegvdh cmvkldndpq gylsqplsll eavlqechnt ftacfhsfyp tpalqwaclc
     1501 dllncldqdi qeanfktsss rllaavmsal chtsvkltsi fpiaydgeal lrsmvkqvst
     1561 endsalahrf pllvahmekl sqseenisgm tsfrevlekm lvivvlpvrn slrrenelfs
     1621 shlvsntcgl lasivselta salgsevdgl nslhsvkstp nrftktsqgr swntgngspd
     1681 aicfsvdkpg vvvvgfsvyg gggiheyele vlvddsdhtg dsthshrwts lelvkgtytt
     1741 ddspsdiaei rldkvvplke nvkyavrlrn ygsrtangdg gmttvqcpdg vtftfstcsl
     1801 ssngtnqtrg qipqilyyrs eydgdlqsql lnkaneedkn csralsvvsa vvraakdllh
     1861 ralavdaedi pellsssslf smllpliiay igpvaaaipk vavevfglvq qllpsvavln
     1921 qkyappafnp nqstdsttgn qpeqglsact tsnhyavves ehpykpacvt hykvtfpecv
     1981 rwitiefdtq cgtaqsedvl rllipvriaq slgfgpkhas vhenlnswie lkkfsgssgw
     2041 ptmvlvlpgn ealfsletas dyvkdekacf ygfkcyaigy efspgsdegi iqlekelanl
     2101 ggscaaalmk kdlalpiagn efeedleile eaalqvcksh sgilgkglal shsptileal
     2161 egslplqvqs neqsfledfi acvpgssggr larwlqpdsy adpqktslil nkddircgwp
     2221 tvitvqtkdq ygdvvhvpnm kvevkaipvs qkktslqqeq vkkvqripgs pataaspsgd
     2281 mtfgglpspk ldssyepmiv kearyiaitm mkayenysfe elrfasptpk rpsenmlirv
     2341 nndgtycanw tpgavglyti hvtidgieid aglevkvkdp pkgmippgtq likpkaepqp
     2401 nkvrkfvakd saglrirshp slqseqigiv kvngsitfid eihnddgvwl rlndetikky
     2461 vpnmngytea wclsfnqhlg ksllvpvdnv fnasqgvrdl dffswtskal ppkesrsntd
     2521 dffkdlnshc pqeavmqeqd mpflrggpgv ykvvktgpsg hnirscpnlr gipigmlvlg
     2581 nkvkavgevt nsegtwvqmd knsmvefces degeawslar drggnqylrh edeqvlleqn
     2641 vqtpppspfs iqafskgtsc sngqgfdygl gnnkvltvlp ttgdqlsail nsiqsrpnlp
     2701 apsifdqaak ppsslvhspf vfgqplsfqq pqpqlqksps cclasreriy ktsdvagpas
     2761 aisslshklk gdrmnftgaa rpispagksd mssrhrtdsr spkldvrmnr aaadqkkprn
     2821 teglsasesl llksdaaklr sdshsrslsp nhntlqtlkt dgrtttglra espgpgtrss
     2881 spktktltav rsgassprss sphdkslpqk apspvktkld pprersksds ytldpdtlrk
     2941 kkvplteplr grstspkpki nakdgkpvte tenrapsphv vqenlhsevv evctsstlkt
     3001 dsitdttced ntefrslddg snkvhfsigk aplkdeqdmr aspkvsrkca grhtrpkkek
     3061 ssflfkgdgs kpvepakqam spsvaecara vfaaflwheg ivhdamacss flkfnpelsk
     3121 ehapirsslt qqpaeeketk lknrhsleis salnmfnisp hgpdiskmgs inknkvlsml
     3181 kepplhekce dgktettsfe tsshhtmksk splpltlqhl vafwedisla tikaasqnmi
     3241 fpspgscavl kkkendkdnk kakkekkkke kvetrprgnl fgemaqlavg gpekdticel
     3301 cgeshpypvt yhmrqahpgc gryaggqgyn sighfcggwa gncgdggigg stwylvcdrc
     3361 rekylrekqa aarekikqsr rkpmqvktpr alptmeahqv ikanalylls lssaaepsil
     3421 cyhpakafqs qlpsvkegis edfpikmpcl ylqtlarhhh enfvgyqddn lfqdemrylr
     3481 stsvpapyis vtpdaspnvf eepesnmksm ppsletspit dtdlakrtvf qrsysvvase
     3541 ydkqhsilpa rvkaiprrrv nsgdaevgss llrhpspels rlisahssls kgernfqwpv
     3601 lafviqhhdl egleiamkqa lrksacrvfa meafnwllcn viqttslhdi lwhfvasltp
     3661 apvepeeeed eenksnkena eqekdtrvce hplsdiviag eaahplphtf hrllqtisdl
     3721 mmslpsgsal qqmalrcwsl kfkqsdhqfl hqsnvfhhin nilsksddgd seesfsisiq
     3781 sgfevmnqel civvclkdlt sivdiktssr pamigsltdg stetfwesgd edknktknit
     3841 incvkginar yvcvhvdnsr dlgnkvtsmt flsgkavedl crikqvdlds rhigwvtsel
     3901 pggdnhiiki elkgpentlr vrqvkilgwk dgesikiagq isangaqqrn cesetlrvfr
     3961 litsqvfgkl isgdaeptpe qeekallssp egeekvhnat sdadlkehmv giifsrsklt
     4021 nlqkqvcahi vqairmeatr vreewehais skenansqpn dedassdayc fellsmvlal
     4081 sgsnvgrqyl aqqltllqdl fsllhtaspr vqrqvtsllr rvlpevtpsr lasiigvksl
     4141 ppadisdiih stekgdwnkl gildmflgci akaltvqlka kgttitgtag ttvgkgvttv
     4201 tlpmifnssy irrgeshwwm kgstptqise iiiklvkdma aghlseawsr vtknaiaeti
     4261 ialtkmeeey rspvrciatt rlwlalaslc vldqdhvdrl ssgrwmgkdg qqkqmpmcdn
     4321 hddgetaaii lcnvcgnlct dcdrflhlhr rtkthqrqvf keeeeaikvd lhegcgrtkl
     4381 fwlmaladsk tmkamvefre qtgkpttsss eacrfcgcrs gtelsavgsv csdtdcqeya
     4441 kiacskthac ghpcggvkne ehclpclhgc dknattlkqd addmcmicft ealsaapaiq
     4501 ldcshvfhlq ccqrvlenrw lgpritfgfm scpicknkin htvlkdlldp ikelyedvrr
     4561 kalmrleyeg lhkseaittp gvrfyndpag famnryayyv cykckkayfg gearcdaeag
     4621 qgddydprel icgacsdvsr aqmcpkhgtd fleykcrycc svavffcfgt thfcnachdd
     4681 fqrmtsipke elphcpagpk gkqlegtecp lhvvhpptge efalgcgvcr nahtf
//
LOCUS       XP_053912512            4728 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase MYCBP2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053912512
VERSION     XP_053912512.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056537.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4728
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..4728
                     /product="E3 ubiquitin-protein ligase MYCBP2 isoform X4"
                     /calculated_mol_wt=519426
     Region          <505..690
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          <912..996
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          1206..1356
                     /region_name="PHR"
                     /note="PHR domain; pfam08005"
                     /db_xref="CDD:462339"
     Region          1697..1854
                     /region_name="PHR"
                     /note="PHR domain; pfam08005"
                     /db_xref="CDD:462339"
     Region          <2364..2415
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          2447..2509
                     /region_name="SH3_3"
                     /note="Bacterial SH3 domain; pfam08239"
                     /db_xref="CDD:462405"
     Region          4309..4357
                     /region_name="Bbox2_MYCBP2"
                     /note="B-box-type 2 zinc finger found in Myc-binding
                     protein 2 (MYCBP2) and similar proteins; cd19799"
                     /db_xref="CDD:380857"
     Region          4475..4529
                     /region_name="RING-H2_PHR"
                     /note="RING finger, H2 subclass, found in the PHR
                     (Pam/Highwire/RPM-1) protein family; cd16463"
                     /db_xref="CDD:438126"
     CDS             1..4728
                     /gene="MYCBP2"
                     /coded_by="XM_054056537.1:10..14196"
                     /db_xref="GeneID:104064920"
ORIGIN      
        1 msaaaaaaga eggfsssssc rmgpeegsag avalgcrgry qlllsgkala eryrriytaa
       61 lsdrelgshp grskklfskk klkrkqktkl kvktrnkten lestitipdi rlhsnpsafn
      121 vycnvrhcvl ewqkkeasvs lasknsvqsg dsdsdeeees keppiklpki ievglcevfe
      181 liketrfshp slclrslqal lnvlqgqqpe glqseppevl eslfqlllei tvrstgmnds
      241 tgqsltalsc aclfslvaaw getgrtlqai sailtnngsh acqtiqvpti lnslqrsvqa
      301 vlvgkiqiqd wfsngikkaa lmhkwplkei svdeddqcll qsdgfflyll ckdglykigs
      361 gysgtvrghi ynstsriknr kekkswlgya qgyllyrdan shsmtairin petleqdgtv
      421 alpdchtegq nilftdgeyi nqiaasrddg fvvrifatst epvlqqelql klarkclhac
      481 gislfdlekd lhiistgfde esavlgagre falmktasgk myytgkyqsl gikqggpsag
      541 kwvelpvtks pkiiqfsvgh dgshallvae dgsifftgsa skgedgestk srrqskpykp
      601 kkiikmegki vistacnngs ssviskdgel ymfgkdaiys dstslvtdlk ghfvtqvamg
      661 kahtcvlmkn gevwtfgvnn kgqcgretgs msqggkgfgv enmatamded leeelddkde
      721 ksmmcppgmh kwkleqcmvc tvcgdctgyg ascvssgrpd rvpggicgcg sgesgcavcg
      781 cckacareld gqearqrgil davkemipld lllavpvpgv nieehlqlrq eekrqrvnrr
      841 hrleegrgpl vfpgpifmnh reqalarirp hpaqlkhkrd khkdgsgerg ekdaskitty
      901 ppgavrfdce lravqvscgf hhsvvlmeng dvytfgygqh gqlghgdvns rgcptlvqal
      961 pgpstqvtag snhtaillmd gqvftfgsfs kgqlgrpild mpywnakpap mpnigskygr
     1021 katwigasgd qtflrideal inshvlatse ifasrhiigl vpasiseppp fkcllinkvd
     1081 gscktfndse qedlqgsgvc ldpvydviwr frpsarelws ynavvadsrl psapdmqsrc
     1141 silspelalp tgskalttrs haalhilgcl dtlaamqdlk mgvanteeet qavmkvyske
     1201 dysvvnrfes hgggwgysah sveairfcad tdillgglgl fggrgeytak iklfelgpdg
     1261 gdhetdgdll aetdvlaydc aarekyammf depvllqagw wyvawarvsg pssdcgshgq
     1321 asittddgvv fqfksskksn ngtdvnagqi pqllyrlpts dgsaskgkqq tsepvhilkr
     1381 sfartvsvec fesllsilhw swttlvlgve elrglkgfqy tatlldlerl rfvgtcclrl
     1441 lrvytceiyp isatakavve etskladcig ktrtllrkil segvdhcmvk ldndpqgyls
     1501 qplslleavl qechntftac fhsfyptpal qwaclcdlln cldqdiqean fktsssrlla
     1561 avmsalchts vkltsifpia ydgeallrsm vkqvstends alahrfpllv ahmeklsqse
     1621 enisgmtsfr evlekmlviv vlpvrnslrr enelfsshlv sntcgllasi vseltasalg
     1681 sevdglnslh svkstpnrft ktsqgrswnt gngspdaicf svdkpgvvvv gfsvyggggi
     1741 heyelevlvd dsdhtgdsth shrwtslelv kgtyttddsp sdiaeirldk vvplkenvky
     1801 avrlrnygsr tangdggmtt vqcpdgvtft fstcslssng tnqtrgqipq ilyyrseydg
     1861 dlqsqllnka needkncsra lsvvsavvra akdllhrala vdaedipell sssslfsmll
     1921 pliiayigpv aaaipkvave vfglvqqllp svavlnqkya ppafnpnqst dsttgnqpeq
     1981 glsacttsnh yavvesehpy kpacvthykv tfpecvrwit iefdtqcgta qsedvlrlli
     2041 pvriaqslgf gpkhasvhen lnswielkkf sgssgwptmv lvlpgnealf sletasdyvk
     2101 dekacfygfk cyaigyefsp gsdegiiqle kelanlggsc aaalmkkdla lpignefeed
     2161 leileeaalq vckshsgilg kglalshspt ilealegslp lqvqsneqsf ledfiacvpg
     2221 ssggrlarwl qpdsyadpqk tslilnkddi rcgwptvitv qtkdqygdvv hvpnmkvevk
     2281 aipvsqkkts lqqeqvkkvq ripgspataa spsgdmtfgg lpspkldssy epmivkeary
     2341 iaitmmkaye nysfeelrfa sptpkrpsen mlirvnndgt ycanwtpgav glytihvtid
     2401 gieidaglev kvkdppkgmi ppgtqlikpk aepqpnkvrk fvakdsaglr irshpslqse
     2461 qigivkvngs itfideihnd dgvwlrlnde tikkyvpnmn gyteawclsf nqhlgksllv
     2521 pvdnvfnasq gvrdldffsw tskalppkes rsntddffkd lnshcpqeav mqeqdmpflr
     2581 ggpgvykvvk tgpsghnirs cpnlrgipig mlvlgnkvka vgevtnsegt wvqmdknsmv
     2641 efcesdegea wslardrggn qylrhedeqv lleqnvqtpp pspfsiqafs kgtscsngqg
     2701 fdyglgnnkg dqlsailnsi qsrpnlpaps ifdqaakpps slvhspfvfg qplsfqqpqp
     2761 qlqsdrmnft gaarpispag ksdmssrhrt dsrspkldvr mnraaadqkk prnteglsas
     2821 eslllksdaa klrsdshsrs lspnhntlqt lktdgrtttg lraespgpgt rssspktktl
     2881 tavrsgassp rsssphdksl pqkapspvkt kldpprersk sdsytldpdt lrkkkvplte
     2941 plrgrstspk pkinakdgkp vtetenraps phvvqenlhs evvevctsst lktdsitdtt
     3001 cedntefrsl ddgsnkvhfs igkaplkdeq dmraspkvsr kcagrhtrpk kekssflfkg
     3061 dgskpvepak qamspsvaec aravfaaflw hegivhdama cssflkfnpe lskehapirs
     3121 sltqqpaeek etklknrhsl eissalnmfn isphgpdisk mgsinknkvl smlkepplhe
     3181 kcedgktett sfetsshhtm ksksplpltl qhlvafwedi slatikaasq nmifpspgsc
     3241 avlkkkendk dnkkakkekk kkekvetrpr gnlfgemaql avggpekdti celcgeshpy
     3301 pvtyhmrqah pgcgryaggq gynsighfcg gwagncgdgg iggstwylvc drcrekylre
     3361 kqaaarekik qsrrkpmqvk tpralptmea hqvikanaly llslssaaep silcyhpaka
     3421 fqsqlpsvke gisedfpikm pclylqtlar hhhenfvgyq ddnlfqdemr ylrstsvpap
     3481 yisvtpdasp nvfeepesnm ksmppslets pitdtdlakr tvfqrsysvv aseydkqhsi
     3541 lparvkaipr rrvnsgdaev gssllrhpsp elsrlisahs slskgernfq wpvlafviqh
     3601 hdlegleiam kqalrksacr vfameafnwl lcnviqttsl hdilwhfvas ltpapvepee
     3661 eedeenksnk enaeqekdtr vcehplsdiv iageaahplp htfhrllqti sdlmmslpsg
     3721 salqqmalrc wslkfkqsdh qflhqsnvfh hinnilsksd dgdseesfsi siqsgfevmn
     3781 qelcivvclk dltsivdikt ssrpamigsl tdgstetfwe sgdedknktk nitincvkgi
     3841 naryvcvhvd nsrdlgnkvt smtflsgkav edlcrikqvd ldsrhigwvt selpggdnhi
     3901 ikielkgpen tlrvrqvkil gwkdgesiki agqisangaq qrncesetlr vfrlitsqvf
     3961 gklisgdaep tpeqeekall sspegeekvh natsdadlke hmvgiifsrs kltnlqkqvc
     4021 ahivqairme atrvreeweh aisskenans qpndedassd aycfellsmv lalsgsnvgr
     4081 qylaqqltll qdlfsllhta sprvqrqvts llrrvlpevt psrlasiigv kslppadisd
     4141 iihstekgdw nklgildmfl gciakaltvq lkakgttitg tagttvgkgv ttvtlpmifn
     4201 ssyirrgesh wwmkgstptq iseiiiklvk dmaaghlsea wsrvtknaia etiialtkme
     4261 eeyrspvrci attrlwlala slcvldqdhv drlssgrwmg kdgqqkqmpm cdnhddgeta
     4321 aiilcnvcgn lctdcdrflh lhrrtkthqr qvfkeeeeai kvdlhegcgr tklfwlmala
     4381 dsktmkamve freqtgkptt ssseacrfcg crsgtelsav gsvcsdtdcq eyakiacskt
     4441 hacghpcggv kneehclpcl hgcdknattl kqdaddmcmi cftealsaap aiqldcshvf
     4501 hlqccqrvle nrwlgpritf gfmscpickn kinhtvlkdl ldpikelyed vrrkalmrle
     4561 yeglhkseai ttpgvrfynd pagfamnrya yyvcykckka yfggearcda eagqgddydp
     4621 relicgacsd vsraqmcpkh gtdfleykcr yccsvavffc fgtthfcnac hddfqrmtsi
     4681 pkeelphcpa gpkgkqlegt ecplhvvhpp tgeefalgcg vcrnahtf
//
LOCUS       XP_053912513            4675 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase MYCBP2 isoform X5 [Cuculus canorus].
ACCESSION   XP_053912513
VERSION     XP_053912513.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056538.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4675
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..4675
                     /product="E3 ubiquitin-protein ligase MYCBP2 isoform X5"
                     /calculated_mol_wt=513660
     Region          <505..690
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          <912..996
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          1206..1356
                     /region_name="PHR"
                     /note="PHR domain; pfam08005"
                     /db_xref="CDD:462339"
     Region          1697..1854
                     /region_name="PHR"
                     /note="PHR domain; pfam08005"
                     /db_xref="CDD:462339"
     Region          <2365..2416
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          2448..2510
                     /region_name="SH3_3"
                     /note="Bacterial SH3 domain; pfam08239"
                     /db_xref="CDD:462405"
     Region          4256..4304
                     /region_name="Bbox2_MYCBP2"
                     /note="B-box-type 2 zinc finger found in Myc-binding
                     protein 2 (MYCBP2) and similar proteins; cd19799"
                     /db_xref="CDD:380857"
     Region          4422..4476
                     /region_name="RING-H2_PHR"
                     /note="RING finger, H2 subclass, found in the PHR
                     (Pam/Highwire/RPM-1) protein family; cd16463"
                     /db_xref="CDD:438126"
     CDS             1..4675
                     /gene="MYCBP2"
                     /coded_by="XM_054056538.1:10..14037"
                     /db_xref="GeneID:104064920"
ORIGIN      
        1 msaaaaaaga eggfsssssc rmgpeegsag avalgcrgry qlllsgkala eryrriytaa
       61 lsdrelgshp grskklfskk klkrkqktkl kvktrnkten lestitipdi rlhsnpsafn
      121 vycnvrhcvl ewqkkeasvs lasknsvqsg dsdsdeeees keppiklpki ievglcevfe
      181 liketrfshp slclrslqal lnvlqgqqpe glqseppevl eslfqlllei tvrstgmnds
      241 tgqsltalsc aclfslvaaw getgrtlqai sailtnngsh acqtiqvpti lnslqrsvqa
      301 vlvgkiqiqd wfsngikkaa lmhkwplkei svdeddqcll qsdgfflyll ckdglykigs
      361 gysgtvrghi ynstsriknr kekkswlgya qgyllyrdan shsmtairin petleqdgtv
      421 alpdchtegq nilftdgeyi nqiaasrddg fvvrifatst epvlqqelql klarkclhac
      481 gislfdlekd lhiistgfde esavlgagre falmktasgk myytgkyqsl gikqggpsag
      541 kwvelpvtks pkiiqfsvgh dgshallvae dgsifftgsa skgedgestk srrqskpykp
      601 kkiikmegki vistacnngs ssviskdgel ymfgkdaiys dstslvtdlk ghfvtqvamg
      661 kahtcvlmkn gevwtfgvnn kgqcgretgs msqggkgfgv enmatamded leeelddkde
      721 ksmmcppgmh kwkleqcmvc tvcgdctgyg ascvssgrpd rvpggicgcg sgesgcavcg
      781 cckacareld gqearqrgil davkemipld lllavpvpgv nieehlqlrq eekrqrvnrr
      841 hrleegrgpl vfpgpifmnh reqalarirp hpaqlkhkrd khkdgsgerg ekdaskitty
      901 ppgavrfdce lravqvscgf hhsvvlmeng dvytfgygqh gqlghgdvns rgcptlvqal
      961 pgpstqvtag snhtaillmd gqvftfgsfs kgqlgrpild mpywnakpap mpnigskygr
     1021 katwigasgd qtflrideal inshvlatse ifasrhiigl vpasiseppp fkcllinkvd
     1081 gscktfndse qedlqgsgvc ldpvydviwr frpsarelws ynavvadsrl psapdmqsrc
     1141 silspelalp tgskalttrs haalhilgcl dtlaamqdlk mgvanteeet qavmkvyske
     1201 dysvvnrfes hgggwgysah sveairfcad tdillgglgl fggrgeytak iklfelgpdg
     1261 gdhetdgdll aetdvlaydc aarekyammf depvllqagw wyvawarvsg pssdcgshgq
     1321 asittddgvv fqfksskksn ngtdvnagqi pqllyrlpts dgsaskgkqq tsepvhilkr
     1381 sfartvsvec fesllsilhw swttlvlgve elrglkgfqy tatlldlerl rfvgtcclrl
     1441 lrvytceiyp isatakavve etskladcig ktrtllrkil segvdhcmvk ldndpqgyls
     1501 qplslleavl qechntftac fhsfyptpal qwaclcdlln cldqdiqean fktsssrlla
     1561 avmsalchts vkltsifpia ydgeallrsm vkqvstends alahrfpllv ahmeklsqse
     1621 enisgmtsfr evlekmlviv vlpvrnslrr enelfsshlv sntcgllasi vseltasalg
     1681 sevdglnslh svkstpnrft ktsqgrswnt gngspdaicf svdkpgvvvv gfsvyggggi
     1741 heyelevlvd dsdhtgdsth shrwtslelv kgtyttddsp sdiaeirldk vvplkenvky
     1801 avrlrnygsr tangdggmtt vqcpdgvtft fstcslssng tnqtrgqipq ilyyrseydg
     1861 dlqsqllnka needkncsra lsvvsavvra akdllhrala vdaedipell sssslfsmll
     1921 pliiayigpv aaaipkvave vfglvqqllp svavlnqkya ppafnpnqst dsttgnqpeq
     1981 glsacttsnh yavvesehpy kpacvthykv tfpecvrwit iefdtqcgta qsedvlrlli
     2041 pvriaqslgf gpkhasvhen lnswielkkf sgssgwptmv lvlpgnealf sletasdyvk
     2101 dekacfygfk cyaigyefsp gsdegiiqle kelanlggsc aaalmkkdla lpiagnefee
     2161 dleileeaal qvckshsgil gkglalshsp tilealegsl plqvqsneqs fledfiacvp
     2221 gssggrlarw lqpdsyadpq ktslilnkdd ircgwptvit vqtkdqygdv vhvpnmkvev
     2281 kaipvsqkkt slqqeqvkkv qripgspata aspsgdmtfg glpspkldss yepmivkear
     2341 yiaitmmkay enysfeelrf asptpkrpse nmlirvnndg tycanwtpga vglytihvti
     2401 dgieidagle vkvkdppkgm ippgtqlikp kaepqpnkvr kfvakdsagl rirshpslqs
     2461 eqigivkvng sitfideihn ddgvwlrlnd etikkyvpnm ngyteawcls fnqhlgksll
     2521 vpvdnvfnas qgvrdldffs wtskalppke srsntddffk dlnshcpqea vmqeqdmpfl
     2581 rggpgvykvv ktgpsghnir scpnlrgipi gmlvlgnkvk avgevtnseg twvqmdknsm
     2641 vefcesdege awslardrgg nqylrhedeq vlleqnvqtp ppspfsiqaf skgtscsngq
     2701 gfdyglgnnk gdrmnftgaa rpispagksd mssrhrtdsr spkldvrmnr aaadqkkprn
     2761 teglsasesl llksdaaklr sdshsrslsp nhntlqtlkt dgrtttglra espgpgtrss
     2821 spktktltav rsgassprss sphdkslpqk apspvktkld pprersksds ytldpdtlrk
     2881 kkvplteplr grstspkpki nakdgkpvte tenrapsphv vqenlhsevv evctsstlkt
     2941 dsitdttced ntefrslddg snkvhfsigk aplkdeqdmr aspkvsrkca grhtrpkkek
     3001 ssflfkgdgs kpvepakqam spsvaecara vfaaflwheg ivhdamacss flkfnpelsk
     3061 ehapirsslt qqpaeeketk lknrhsleis salnmfnisp hgpdiskmgs inknkvlsml
     3121 kepplhekce dgktettsfe tsshhtmksk splpltlqhl vafwedisla tikaasqnmi
     3181 fpspgscavl kkkendkdnk kakkekkkke kvetrprgnl fgemaqlavg gpekdticel
     3241 cgeshpypvt yhmrqahpgc gryaggqgyn sighfcggwa gncgdggigg stwylvcdrc
     3301 rekylrekqa aarekikqsr rkpmqvktpr alptmeahqv ikanalylls lssaaepsil
     3361 cyhpakafqs qlpsvkegis edfpikmpcl ylqtlarhhh enfvgyqddn lfqdemrylr
     3421 stsvpapyis vtpdaspnvf eepesnmksm ppsletspit dtdlakrtvf qrsysvvase
     3481 ydkqhsilpa rvkaiprrrv nsgdaevgss llrhpspels rlisahssls kgernfqwpv
     3541 lafviqhhdl egleiamkqa lrksacrvfa meafnwllcn viqttslhdi lwhfvasltp
     3601 apvepeeeed eenksnkena eqekdtrvce hplsdiviag eaahplphtf hrllqtisdl
     3661 mmslpsgsal qqmalrcwsl kfkqsdhqfl hqsnvfhhin nilsksddgd seesfsisiq
     3721 sgfevmnqel civvclkdlt sivdiktssr pamigsltdg stetfwesgd edknktknit
     3781 incvkginar yvcvhvdnsr dlgnkvtsmt flsgkavedl crikqvdlds rhigwvtsel
     3841 pggdnhiiki elkgpentlr vrqvkilgwk dgesikiagq isangaqqrn cesetlrvfr
     3901 litsqvfgkl isgdaeptpe qeekallssp egeekvhnat sdadlkehmv giifsrsklt
     3961 nlqkqvcahi vqairmeatr vreewehais skenansqpn dedassdayc fellsmvlal
     4021 sgsnvgrqyl aqqltllqdl fsllhtaspr vqrqvtsllr rvlpevtpsr lasiigvksl
     4081 ppadisdiih stekgdwnkl gildmflgci akaltvqlka kgttitgtag ttvgkgvttv
     4141 tlpmifnssy irrgeshwwm kgstptqise iiiklvkdma aghlseawsr vtknaiaeti
     4201 ialtkmeeey rspvrciatt rlwlalaslc vldqdhvdrl ssgrwmgkdg qqkqmpmcdn
     4261 hddgetaaii lcnvcgnlct dcdrflhlhr rtkthqrqvf keeeeaikvd lhegcgrtkl
     4321 fwlmaladsk tmkamvefre qtgkpttsss eacrfcgcrs gtelsavgsv csdtdcqeya
     4381 kiacskthac ghpcggvkne ehclpclhgc dknattlkqd addmcmicft ealsaapaiq
     4441 ldcshvfhlq ccqrvlenrw lgpritfgfm scpicknkin htvlkdlldp ikelyedvrr
     4501 kalmrleyeg lhkseaittp gvrfyndpag famnryayyv cykckkayfg gearcdaeag
     4561 qgddydprel icgacsdvsr aqmcpkhgtd fleykcrycc svavffcfgt thfcnachdd
     4621 fqrmtsipke elphcpagpk gkqlegtecp lhvvhpptge efalgcgvcr nahtf
//
LOCUS       XP_053912514            4649 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase MYCBP2 isoform X6 [Cuculus canorus].
ACCESSION   XP_053912514
VERSION     XP_053912514.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056539.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4649
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..4649
                     /product="E3 ubiquitin-protein ligase MYCBP2 isoform X6"
                     /calculated_mol_wt=510782
     Region          <505..690
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          <912..996
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          1206..1356
                     /region_name="PHR"
                     /note="PHR domain; pfam08005"
                     /db_xref="CDD:462339"
     Region          1697..1854
                     /region_name="PHR"
                     /note="PHR domain; pfam08005"
                     /db_xref="CDD:462339"
     Region          <2364..2415
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          2447..2509
                     /region_name="SH3_3"
                     /note="Bacterial SH3 domain; pfam08239"
                     /db_xref="CDD:462405"
     Region          4230..4278
                     /region_name="Bbox2_MYCBP2"
                     /note="B-box-type 2 zinc finger found in Myc-binding
                     protein 2 (MYCBP2) and similar proteins; cd19799"
                     /db_xref="CDD:380857"
     Region          4396..4450
                     /region_name="RING-H2_PHR"
                     /note="RING finger, H2 subclass, found in the PHR
                     (Pam/Highwire/RPM-1) protein family; cd16463"
                     /db_xref="CDD:438126"
     CDS             1..4649
                     /gene="MYCBP2"
                     /coded_by="XM_054056539.1:10..13959"
                     /db_xref="GeneID:104064920"
ORIGIN      
        1 msaaaaaaga eggfsssssc rmgpeegsag avalgcrgry qlllsgkala eryrriytaa
       61 lsdrelgshp grskklfskk klkrkqktkl kvktrnkten lestitipdi rlhsnpsafn
      121 vycnvrhcvl ewqkkeasvs lasknsvqsg dsdsdeeees keppiklpki ievglcevfe
      181 liketrfshp slclrslqal lnvlqgqqpe glqseppevl eslfqlllei tvrstgmnds
      241 tgqsltalsc aclfslvaaw getgrtlqai sailtnngsh acqtiqvpti lnslqrsvqa
      301 vlvgkiqiqd wfsngikkaa lmhkwplkei svdeddqcll qsdgfflyll ckdglykigs
      361 gysgtvrghi ynstsriknr kekkswlgya qgyllyrdan shsmtairin petleqdgtv
      421 alpdchtegq nilftdgeyi nqiaasrddg fvvrifatst epvlqqelql klarkclhac
      481 gislfdlekd lhiistgfde esavlgagre falmktasgk myytgkyqsl gikqggpsag
      541 kwvelpvtks pkiiqfsvgh dgshallvae dgsifftgsa skgedgestk srrqskpykp
      601 kkiikmegki vistacnngs ssviskdgel ymfgkdaiys dstslvtdlk ghfvtqvamg
      661 kahtcvlmkn gevwtfgvnn kgqcgretgs msqggkgfgv enmatamded leeelddkde
      721 ksmmcppgmh kwkleqcmvc tvcgdctgyg ascvssgrpd rvpggicgcg sgesgcavcg
      781 cckacareld gqearqrgil davkemipld lllavpvpgv nieehlqlrq eekrqrvnrr
      841 hrleegrgpl vfpgpifmnh reqalarirp hpaqlkhkrd khkdgsgerg ekdaskitty
      901 ppgavrfdce lravqvscgf hhsvvlmeng dvytfgygqh gqlghgdvns rgcptlvqal
      961 pgpstqvtag snhtaillmd gqvftfgsfs kgqlgrpild mpywnakpap mpnigskygr
     1021 katwigasgd qtflrideal inshvlatse ifasrhiigl vpasiseppp fkcllinkvd
     1081 gscktfndse qedlqgsgvc ldpvydviwr frpsarelws ynavvadsrl psapdmqsrc
     1141 silspelalp tgskalttrs haalhilgcl dtlaamqdlk mgvanteeet qavmkvyske
     1201 dysvvnrfes hgggwgysah sveairfcad tdillgglgl fggrgeytak iklfelgpdg
     1261 gdhetdgdll aetdvlaydc aarekyammf depvllqagw wyvawarvsg pssdcgshgq
     1321 asittddgvv fqfksskksn ngtdvnagqi pqllyrlpts dgsaskgkqq tsepvhilkr
     1381 sfartvsvec fesllsilhw swttlvlgve elrglkgfqy tatlldlerl rfvgtcclrl
     1441 lrvytceiyp isatakavve etskladcig ktrtllrkil segvdhcmvk ldndpqgyls
     1501 qplslleavl qechntftac fhsfyptpal qwaclcdlln cldqdiqean fktsssrlla
     1561 avmsalchts vkltsifpia ydgeallrsm vkqvstends alahrfpllv ahmeklsqse
     1621 enisgmtsfr evlekmlviv vlpvrnslrr enelfsshlv sntcgllasi vseltasalg
     1681 sevdglnslh svkstpnrft ktsqgrswnt gngspdaicf svdkpgvvvv gfsvyggggi
     1741 heyelevlvd dsdhtgdsth shrwtslelv kgtyttddsp sdiaeirldk vvplkenvky
     1801 avrlrnygsr tangdggmtt vqcpdgvtft fstcslssng tnqtrgqipq ilyyrseydg
     1861 dlqsqllnka needkncsra lsvvsavvra akdllhrala vdaedipell sssslfsmll
     1921 pliiayigpv aaaipkvave vfglvqqllp svavlnqkya ppafnpnqst dsttgnqpeq
     1981 glsacttsnh yavvesehpy kpacvthykv tfpecvrwit iefdtqcgta qsedvlrlli
     2041 pvriaqslgf gpkhasvhen lnswielkkf sgssgwptmv lvlpgnealf sletasdyvk
     2101 dekacfygfk cyaigyefsp gsdegiiqle kelanlggsc aaalmkkdla lpignefeed
     2161 leileeaalq vckshsgilg kglalshspt ilealegslp lqvqsneqsf ledfiacvpg
     2221 ssggrlarwl qpdsyadpqk tslilnkddi rcgwptvitv qtkdqygdvv hvpnmkvevk
     2281 aipvsqkkts lqqeqvkkvq ripgspataa spsgdmtfgg lpspkldssy epmivkeary
     2341 iaitmmkaye nysfeelrfa sptpkrpsen mlirvnndgt ycanwtpgav glytihvtid
     2401 gieidaglev kvkdppkgmi ppgtqlikpk aepqpnkvrk fvakdsaglr irshpslqse
     2461 qigivkvngs itfideihnd dgvwlrlnde tikkyvpnmn gyteawclsf nqhlgksllv
     2521 pvdesrsntd dffkdlnshc pqeavmqeqd mpflrggpgv ykvvktgpsg hnirscpnlr
     2581 gipigmlvlg nkvkavgevt nsegtwvqmd knsmvefces degeawslar drggnqylrh
     2641 edeqvlleqn vqtpppspfs iqafskgtsc sngqgfdygl gnnkgdrmnf tgaarpispa
     2701 gksdmssrhr tdsrspkldv rmnraaadqk kprnteglsa seslllksda aklrsdshsr
     2761 slspnhntlq tlktdgrttt glraespgpg trssspktkt ltavrsgass prsssphdks
     2821 lpqkapspvk tkldpprers ksdsytldpd tlrkkkvplt eplrgrstsp kpkinakdgk
     2881 pvtetenrap sphvvqenlh sevvevctss tlktdsitdt tcedntefrs lddgsnkvhf
     2941 sigkaplkde qdmraspkvs rkcagrhtrp kkekssflfk gdgskpvepa kqamspsvae
     3001 caravfaafl whegivhdam acssflkfnp elskehapir ssltqqpaee ketklknrhs
     3061 leissalnmf nisphgpdis kmgsinknkv lsmlkepplh ekcedgktet tsfetsshht
     3121 mksksplplt lqhlvafwed islatikaas qnmifpspgs cavlkkkend kdnkkakkek
     3181 kkkekvetrp rgnlfgemaq lavggpekdt icelcgeshp ypvtyhmrqa hpgcgryagg
     3241 qgynsighfc ggwagncgdg giggstwylv cdrcrekylr ekqaaareki kqsrrkpmqv
     3301 ktpralptme ahqvikanal yllslssaae psilcyhpak afqsqlpsvk egisedfpik
     3361 mpclylqtla rhhhenfvgy qddnlfqdem rylrstsvpa pyisvtpdas pnvfeepesn
     3421 mksmppslet spitdtdlak rtvfqrsysv vaseydkqhs ilparvkaip rrrvnsgdae
     3481 vgssllrhps pelsrlisah sslskgernf qwpvlafviq hhdlegleia mkqalrksac
     3541 rvfameafnw llcnviqtts lhdilwhfva sltpapvepe eeedeenksn kenaeqekdt
     3601 rvcehplsdi viageaahpl phtfhrllqt isdlmmslps gsalqqmalr cwslkfkqsd
     3661 hqflhqsnvf hhinnilsks ddgdseesfs isiqsgfevm nqelcivvcl kdltsivdik
     3721 tssrpamigs ltdgstetfw esgdedknkt knitincvkg inaryvcvhv dnsrdlgnkv
     3781 tsmtflsgka vedlcrikqv dldsrhigwv tselpggdnh iikielkgpe ntlrvrqvki
     3841 lgwkdgesik iagqisanga qqrncesetl rvfrlitsqv fgklisgdae ptpeqeekal
     3901 lsspegeekv hnatsdadlk ehmvgiifsr skltnlqkqv cahivqairm eatrvreewe
     3961 haisskenan sqpndedass daycfellsm vlalsgsnvg rqylaqqltl lqdlfsllht
     4021 asprvqrqvt sllrrvlpev tpsrlasiig vkslppadis diihstekgd wnklgildmf
     4081 lgciakaltv qlkakgttit gtagttvgkg vttvtlpmif nssyirrges hwwmkgstpt
     4141 qiseiiiklv kdmaaghlse awsrvtknai aetiialtkm eeeyrspvrc iattrlwlal
     4201 aslcvldqdh vdrlssgrwm gkdgqqkqmp mcdnhddget aaiilcnvcg nlctdcdrfl
     4261 hlhrrtkthq rqvfkeeeea ikvdlhegcg rtklfwlmal adsktmkamv efreqtgkpt
     4321 tssseacrfc gcrsgtelsa vgsvcsdtdc qeyakiacsk thacghpcgg vkneehclpc
     4381 lhgcdknatt lkqdaddmcm icftealsaa paiqldcshv fhlqccqrvl enrwlgprit
     4441 fgfmscpick nkinhtvlkd lldpikelye dvrrkalmrl eyeglhksea ittpgvrfyn
     4501 dpagfamnry ayyvcykckk ayfggearcd aeagqgddyd prelicgacs dvsraqmcpk
     4561 hgtdfleykc ryccsvavff cfgtthfcna chddfqrmts ipkeelphcp agpkgkqleg
     4621 tecplhvvhp ptgeefalgc gvcrnahtf
//
LOCUS       XP_053912515            4725 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase MYCBP2 isoform X7 [Cuculus canorus].
ACCESSION   XP_053912515
VERSION     XP_053912515.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056540.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4725
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..4725
                     /product="E3 ubiquitin-protein ligase MYCBP2 isoform X7"
                     /calculated_mol_wt=519076
     Region          <505..690
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          <912..996
                     /region_name="ATS1"
                     /note="Alpha-tubulin suppressor ATS1 and related RCC1
                     domain-containing proteins [Cell cycle control, cell
                     division, chromosome partitioning, Cytoskeleton]; COG5184"
                     /db_xref="CDD:444065"
     Region          1206..1356
                     /region_name="PHR"
                     /note="PHR domain; pfam08005"
                     /db_xref="CDD:462339"
     Region          1697..1854
                     /region_name="PHR"
                     /note="PHR domain; pfam08005"
                     /db_xref="CDD:462339"
     Region          <2364..2415
                     /region_name="IG_FLMN"
                     /note="Filamin-type immunoglobulin domains; smart00557"
                     /db_xref="CDD:214720"
     Region          2447..2509
                     /region_name="SH3_3"
                     /note="Bacterial SH3 domain; pfam08239"
                     /db_xref="CDD:462405"
     Region          4306..4354
                     /region_name="Bbox2_MYCBP2"
                     /note="B-box-type 2 zinc finger found in Myc-binding
                     protein 2 (MYCBP2) and similar proteins; cd19799"
                     /db_xref="CDD:380857"
     Region          4472..4526
                     /region_name="RING-H2_PHR"
                     /note="RING finger, H2 subclass, found in the PHR
                     (Pam/Highwire/RPM-1) protein family; cd16463"
                     /db_xref="CDD:438126"
     CDS             1..4725
                     /gene="MYCBP2"
                     /coded_by="XM_054056540.1:10..14187"
                     /db_xref="GeneID:104064920"
ORIGIN      
        1 msaaaaaaga eggfsssssc rmgpeegsag avalgcrgry qlllsgkala eryrriytaa
       61 lsdrelgshp grskklfskk klkrkqktkl kvktrnkten lestitipdi rlhsnpsafn
      121 vycnvrhcvl ewqkkeasvs lasknsvqsg dsdsdeeees keppiklpki ievglcevfe
      181 liketrfshp slclrslqal lnvlqgqqpe glqseppevl eslfqlllei tvrstgmnds
      241 tgqsltalsc aclfslvaaw getgrtlqai sailtnngsh acqtiqvpti lnslqrsvqa
      301 vlvgkiqiqd wfsngikkaa lmhkwplkei svdeddqcll qsdgfflyll ckdglykigs
      361 gysgtvrghi ynstsriknr kekkswlgya qgyllyrdan shsmtairin petleqdgtv
      421 alpdchtegq nilftdgeyi nqiaasrddg fvvrifatst epvlqqelql klarkclhac
      481 gislfdlekd lhiistgfde esavlgagre falmktasgk myytgkyqsl gikqggpsag
      541 kwvelpvtks pkiiqfsvgh dgshallvae dgsifftgsa skgedgestk srrqskpykp
      601 kkiikmegki vistacnngs ssviskdgel ymfgkdaiys dstslvtdlk ghfvtqvamg
      661 kahtcvlmkn gevwtfgvnn kgqcgretgs msqggkgfgv enmatamded leeelddkde
      721 ksmmcppgmh kwkleqcmvc tvcgdctgyg ascvssgrpd rvpggicgcg sgesgcavcg
      781 cckacareld gqearqrgil davkemipld lllavpvpgv nieehlqlrq eekrqrvnrr
      841 hrleegrgpl vfpgpifmnh reqalarirp hpaqlkhkrd khkdgsgerg ekdaskitty
      901 ppgavrfdce lravqvscgf hhsvvlmeng dvytfgygqh gqlghgdvns rgcptlvqal
      961 pgpstqvtag snhtaillmd gqvftfgsfs kgqlgrpild mpywnakpap mpnigskygr
     1021 katwigasgd qtflrideal inshvlatse ifasrhiigl vpasiseppp fkcllinkvd
     1081 gscktfndse qedlqgsgvc ldpvydviwr frpsarelws ynavvadsrl psapdmqsrc
     1141 silspelalp tgskalttrs haalhilgcl dtlaamqdlk mgvanteeet qavmkvyske
     1201 dysvvnrfes hgggwgysah sveairfcad tdillgglgl fggrgeytak iklfelgpdg
     1261 gdhetdgdll aetdvlaydc aarekyammf depvllqagw wyvawarvsg pssdcgshgq
     1321 asittddgvv fqfksskksn ngtdvnagqi pqllyrlpts dgsaskgkqq tsepvhilkr
     1381 sfartvsvec fesllsilhw swttlvlgve elrglkgfqy tatlldlerl rfvgtcclrl
     1441 lrvytceiyp isatakavve etskladcig ktrtllrkil segvdhcmvk ldndpqgyls
     1501 qplslleavl qechntftac fhsfyptpal qwaclcdlln cldqdiqean fktsssrlla
     1561 avmsalchts vkltsifpia ydgeallrsm vkqvstends alahrfpllv ahmeklsqse
     1621 enisgmtsfr evlekmlviv vlpvrnslrr enelfsshlv sntcgllasi vseltasalg
     1681 sevdglnslh svkstpnrft ktsqgrswnt gngspdaicf svdkpgvvvv gfsvyggggi
     1741 heyelevlvd dsdhtgdsth shrwtslelv kgtyttddsp sdiaeirldk vvplkenvky
     1801 avrlrnygsr tangdggmtt vqcpdgvtft fstcslssng tnqtrgqipq ilyyrseydg
     1861 dlqsqllnka needkncsra lsvvsavvra akdllhrala vdaedipell sssslfsmll
     1921 pliiayigpv aaaipkvave vfglvqqllp svavlnqkya ppafnpnqst dsttgnqpeq
     1981 glsacttsnh yavvesehpy kpacvthykv tfpecvrwit iefdtqcgta qsedvlrlli
     2041 pvriaqslgf gpkhasvhen lnswielkkf sgssgwptmv lvlpgnealf sletasdyvk
     2101 dekacfygfk cyaigyefsp gsdegiiqle kelanlggsc aaalmkkdla lpignefeed
     2161 leileeaalq vckshsgilg kglalshspt ilealegslp lqvqsneqsf ledfiacvpg
     2221 ssggrlarwl qpdsyadpqk tslilnkddi rcgwptvitv qtkdqygdvv hvpnmkvevk
     2281 aipvsqkkts lqqeqvkkvq ripgspataa spsgdmtfgg lpspkldssy epmivkeary
     2341 iaitmmkaye nysfeelrfa sptpkrpsen mlirvnndgt ycanwtpgav glytihvtid
     2401 gieidaglev kvkdppkgmi ppgtqlikpk aepqpnkvrk fvakdsaglr irshpslqse
     2461 qigivkvngs itfideihnd dgvwlrlnde tikkyvpnmn gyteawclsf nqhlgksllv
     2521 pvdnvfnasq gvrdldffsw tskalppkes rsntddffkd lnshcpqeav mqeqdmpflr
     2581 ggpgvykvvk tgpsghnirs cpnlrgipig mlvlgnkvka vgevtnsegt wvqmdknsmv
     2641 efcesdegea wslardrggn qylrhedeqv lleqnvqtpp pspfsiqafs kgtscsngqg
     2701 fdyglgnnkg dqlsailnsi qsrpnlpaps ifdqaakpps slvhspfvfg qplsfqqpqp
     2761 qlqsdrmnft gaarpispag ksdmssrhrt dsrspkldvr mnraaadqkk prnteglsas
     2821 eslllksdaa klrsdshsrs lspnhntlqt lktdgrtttg lraespgpgt rssspktktl
     2881 tavrsgassp rsssphdksl pqkapspvkt kldpprersk sdsytldpdt lrkkkvplte
     2941 plrgrstspk pkinakdgkp vtetenraps phvvqenlhs evvevctsst lktdsitdtt
     3001 cedntefrsl ddgsnkvhfs igkaplkdeq dmraspkvsr kcagrhtrpk kekssflfkg
     3061 dgskpvepak qamspsvaec aravfaaflw hegivhdama cssflkfnpe lskehapirs
     3121 sltqqpaeek etklknrhsl eissalnmfn isphgpdisk mgsinknkvl smlkepplhe
     3181 kcedgktett sfetsshhtm ksksplpltl qhlvafwedi slatikaasq nmifpspgsc
     3241 avlkkkendk dnkkakkekk kkekvetrpr gnlfgemaql avggpekdti celcgeshpy
     3301 pvtyhmrqah pgcgryaggq gynsighfcg gwagncgdgg iggstwylvc drcrekylre
     3361 kqaaarekik qsrrkpmqvk tpralptmea hqvikanaly llslssaaep silcyhpaka
     3421 fqsqlpsvke gisedfpikm pclylqtlar hhhenfvgyq ddnlfqdemr ylrstsvpap
     3481 yisvtpdasp nvfeepesnm ksmppslets pitdtdlakr tvfqrsysvv aseydkqhsi
     3541 lparvkaipr rrvnsgdaev gssllrhpsp elsrlisahs slskgernfq wpvlafviqh
     3601 hdlegleiam kqalrksacr vfameafnwl lcnviqttsl hdilwhfvas ltpapvepee
     3661 eedeenksnk enaeqekdtr vcehplsdiv iageaahplp htfhrllqti sdlmmslpsg
     3721 salqqmalrc wslkfkqsdh qflhqsnvfh hinnilsksd dgdseesfsi siqsgfevmn
     3781 qelcivvclk dltsivdikt ssrpamigsl tdgstetfwe sgdedknktk nitincvkgi
     3841 naryvcvhvd nsrdlgnkvt smtflsgkav edlcrikqvd ldsrhigwvt selpggdnhi
     3901 ikielkgpen tlrvrqvkil gwkdgesiki agqisangaq qrncesetlr vfrlitsqvf
     3961 gklisgdaep tpeqeekall sspegeekat sdadlkehmv giifsrsklt nlqkqvcahi
     4021 vqairmeatr vreewehais skenansqpn dedassdayc fellsmvlal sgsnvgrqyl
     4081 aqqltllqdl fsllhtaspr vqrqvtsllr rvlpevtpsr lasiigvksl ppadisdiih
     4141 stekgdwnkl gildmflgci akaltvqlka kgttitgtag ttvgkgvttv tlpmifnssy
     4201 irrgeshwwm kgstptqise iiiklvkdma aghlseawsr vtknaiaeti ialtkmeeey
     4261 rspvrciatt rlwlalaslc vldqdhvdrl ssgrwmgkdg qqkqmpmcdn hddgetaaii
     4321 lcnvcgnlct dcdrflhlhr rtkthqrqvf keeeeaikvd lhegcgrtkl fwlmaladsk
     4381 tmkamvefre qtgkpttsss eacrfcgcrs gtelsavgsv csdtdcqeya kiacskthac
     4441 ghpcggvkne ehclpclhgc dknattlkqd addmcmicft ealsaapaiq ldcshvfhlq
     4501 ccqrvlenrw lgpritfgfm scpicknkin htvlkdlldp ikelyedvrr kalmrleyeg
     4561 lhkseaittp gvrfyndpag famnryayyv cykckkayfg gearcdaeag qgddydprel
     4621 icgacsdvsr aqmcpkhgtd fleykcrycc svavffcfgt thfcnachdd fqrmtsipke
     4681 elphcpagpk gkqlegtecp lhvvhpptge efalgcgvcr nahtf
//
LOCUS       XP_009564980             689 aa            linear   VRT 09-MAR-2023
DEFINITION  complement C1s subcomponent [Cuculus canorus].
ACCESSION   XP_009564980
VERSION     XP_009564980.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566685.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564980.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..689
                     /product="complement C1s subcomponent"
                     /calculated_mol_wt=77514
     Region          16..128
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cd00041"
                     /db_xref="CDD:238001"
     Site            order(19,21,23,50,55,97,123,125,127..128)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     Region          142..170
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          174..286
                     /region_name="CUB"
                     /note="CUB domain; extracellular domain; present in
                     proteins mostly known to be involved in development; not
                     found in prokaryotes, plants and yeast; cl00049"
                     /db_xref="CDD:412131"
     Site            order(183,185,187,214,221,257,283,285,287..288)
                     /site_type="other"
                     /note="heterodimerization interface [polypeptide binding]"
                     /db_xref="CDD:238001"
     Region          297..354
                     /region_name="CCP"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     cd00033"
                     /db_xref="CDD:153056"
     Site            order(302,321)
                     /site_type="active"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     Region          358..423
                     /region_name="Sushi"
                     /note="Sushi repeat (SCR repeat); pfam00084"
                     /db_xref="CDD:459664"
     Region          440..677
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cd00190"
                     /db_xref="CDD:238113"
     Site            440
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(477,531,631)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(625,653,655)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..689
                     /gene="C1S"
                     /coded_by="XM_009566685.2:160..2229"
                     /db_xref="GeneID:104064359"
ORIGIN      
        1 mwylfffclp vwadadsmyg eilspnypqv ypndvqeswe iqvpsgygir lyfthmdlep
       61 sqnceydsvk ilyggyvegv lcgrkkprap gssiveefhv pyntltmhfq sdfsneehft
      121 gfaayyvavd ldectdfvee pcshycnnyi ggyfctcppd yflykdnktc gvncsgnvft
      181 eptgeiaspn ypneypensr cdyqvalkpg yfvaitihsg dfdvepanse gschdsltfi
      241 sgkqrigpyc gskfpgppei ktrnnildii fqtdgavqhk gwklryyadp vtchssvipn
      301 svldpkkdry ifkdivrvtc vegyeivmkr dsiksfhssc qdngewsnsn ficvpvncgd
      361 pipienaqai yvselheply kaafqyqcda pyytletkgd avyhcsaage wvneemgtkl
      421 pkcvpvcgvp snpirekari fggtraekgn fpwhvyfhhp rgggvliser wvmtaahvle
      481 gydnpnmyag vinvgrdtly regkllipea sfihpdwkkq pietrtdfdn diallklrep
      541 vkmgpnispl clpgktpeye lqegtlgyia gwgqretgrl pvylwkaqip vvdmavcqsv
      601 kpegsadssa yrftdnmica ggdkdsckgd sggayairdp lddrryyvag liswgpkcgt
      661 fglytkvvry ldwiretmsk hedqeasqd
//
LOCUS       XP_009564942             358 aa            linear   VRT 09-MAR-2023
DEFINITION  protein Wnt-2 [Cuculus canorus].
ACCESSION   XP_009564942
VERSION     XP_009564942.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566647.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564942.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..358
                     /product="protein Wnt-2"
                     /calculated_mol_wt=40111
     Region          34..347
                     /region_name="Wnt_Wnt2"
                     /note="Wnt domain found in protein Wnt-2 and similar
                     proteins; cd19345"
                     /db_xref="CDD:381719"
     Site            order(205..206,209..211,219,326,328,330,332)
                     /site_type="other"
                     /note="Frizzled receptor binding site [polypeptide
                     binding]"
                     /db_xref="CDD:381719"
     CDS             1..358
                     /gene="WNT2"
                     /coded_by="XM_009566647.2:684..1760"
                     /db_xref="GeneID:104064322"
ORIGIN      
        1 mnffsgiwws lplvlvwvtp pvtsswwymg avgssrvmcd nvpglvsrqr qlcrrhpeam
       61 lsigrgvaaw taecqhqfrr hrwdcnaler gqrllgrvll rssresafvh aissagvvfa
      121 itracsqgel kscscdpkkk gsakdnkghf dwggcsdnid ygikfarafv dakerkgkda
      181 ralmnlhnnr agrkavkrfl kqeckchgvs gsctlrtcwl amadfrktgd ylwkkyngai
      241 qvvmnqdgtg ftvankrfkk ptkndlvyfe sspdycirdr dvgslgtagr vcnqtsrgmd
      301 scevmccgrg ydtsrvsrmt kceckfhwcc avrcqdclev vdihtckapk sagwtsqt
//
LOCUS       XP_009555253             399 aa            linear   VRT 09-MAR-2023
DEFINITION  oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial
            [Cuculus canorus].
ACCESSION   XP_009555253
VERSION     XP_009555253.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556958.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555253.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..399
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..399
                     /product="oxygen-dependent coproporphyrinogen-III oxidase,
                     mitochondrial"
                     /calculated_mol_wt=44638
     Region          100..397
                     /region_name="Coprogen_oxidas"
                     /note="Coproporphyrinogen III oxidase; pfam01218"
                     /db_xref="CDD:460116"
     CDS             1..399
                     /gene="CPOX"
                     /coded_by="XM_009556958.2:7..1206"
                     /db_xref="GeneID:104055780"
ORIGIN      
        1 mavsarvlgr gvpalpallr rslccaapgr tgggarraal aaagaagalg lalwrrraam
       61 aaseededee eelrfmappv sglrelrrrr relrsrmell imetqaevcr alaaldpgaa
      121 favdswerke ggggiscvlq dgdvfekagv nvsvvsglls eeaarqmrsr gkslkakdgk
      181 lpfcamgvss vihpknphvp tmhfnyryfe ieeadgtkqw wfgggtdltp tylneedavh
      241 fhktlkeacd khdlklypky kkwcddyfyi khrgerrgig giffddldsp skeevfqfvk
      301 scakavvpcy ipivkkhchd sftpeeklwq qlrrgryvef nlvydrgtkf glltpgsrie
      361 silmslplta rweymhtppa sskeaeilev lrnpkdwvy
//
LOCUS       XP_053912518             424 aa            linear   VRT 09-MAR-2023
DEFINITION  palmitoyltransferase ZDHHC23 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912518
VERSION     XP_053912518.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056543.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..424
                     /product="palmitoyltransferase ZDHHC23 isoform X1"
                     /calculated_mol_wt=47025
     Region          238..373
                     /region_name="DHHC"
                     /note="DHHC palmitoyltransferase; pfam01529"
                     /db_xref="CDD:396215"
     CDS             1..424
                     /gene="ZDHHC23"
                     /coded_by="XM_054056543.1:54..1328"
                     /db_xref="GeneID:104055853"
ORIGIN      
        1 meeqplccce yvdrsgqrnh laacccdcpd ldegcerwlt crslppgale riadtvadrv
       61 ripwfagavk vnvslvpplv llpvllhiaa lhfllglvil tslpvvvlwy yylthrrker
      121 tlfflslglf slgymyyvfl qevvprghvg ysqvvaltcg lilmlaaltr akrdpgylpi
      181 pasnekslqq dlpnksvrgs snglhgvtis gaasgralng evksycrmsa eklegvkrdw
      241 cakcqlvkpa raghcrlcgr cvrrldhhcv ckvfllsfwr inscvgeqnh qafilalsff
      301 mvtavygitl tlhticrgrt pfvalfycpg aysdyssals ftcvwycaiv tagmgyilli
      361 qllnisynvt erearlalrd ntgrrllggl vidtgqynrg flcnwghfvs lgssppqrsa
      421 ediv
//
LOCUS       XP_053912519             415 aa            linear   VRT 09-MAR-2023
DEFINITION  palmitoyltransferase ZDHHC23 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912519
VERSION     XP_053912519.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056544.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..415
                     /product="palmitoyltransferase ZDHHC23 isoform X2"
                     /calculated_mol_wt=45931
     Region          238..364
                     /region_name="DHHC"
                     /note="DHHC palmitoyltransferase; pfam01529"
                     /db_xref="CDD:396215"
     CDS             1..415
                     /gene="ZDHHC23"
                     /coded_by="XM_054056544.1:54..1301"
                     /db_xref="GeneID:104055853"
ORIGIN      
        1 meeqplccce yvdrsgqrnh laacccdcpd ldegcerwlt crslppgale riadtvadrv
       61 ripwfagavk vnvslvpplv llpvllhiaa lhfllglvil tslpvvvlwy yylthrrker
      121 tlfflslglf slgymyyvfl qevvprghvg ysqvvaltcg lilmlaaltr akrdpgylpi
      181 pasnekslqq dlpnksvrgs snglhgvtis gaasgralng evksycrmsa eklegvkrdw
      241 cakcqlvkpa raghcrlcgr cvrrldhhcv winscvgeqn hqafilalsf fmvtavygit
      301 ltlhticrgr tpfvalfycp gaysdyssal sftcvwycai vtagmgyill iqllnisynv
      361 terearlalr dntgrrllgg lvidtgqynr gflcnwghfv slgssppqrs aediv
//
LOCUS       XP_053912520             353 aa            linear   VRT 09-MAR-2023
DEFINITION  palmitoyltransferase ZDHHC23 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912520
VERSION     XP_053912520.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056545.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..353
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..353
                     /product="palmitoyltransferase ZDHHC23 isoform X3"
                     /calculated_mol_wt=39122
     Region          238..>317
                     /region_name="DHHC"
                     /note="DHHC palmitoyltransferase; pfam01529"
                     /db_xref="CDD:396215"
     CDS             1..353
                     /gene="ZDHHC23"
                     /coded_by="XM_054056545.1:54..1115"
                     /db_xref="GeneID:104055853"
ORIGIN      
        1 meeqplccce yvdrsgqrnh laacccdcpd ldegcerwlt crslppgale riadtvadrv
       61 ripwfagavk vnvslvpplv llpvllhiaa lhfllglvil tslpvvvlwy yylthrrker
      121 tlfflslglf slgymyyvfl qevvprghvg ysqvvaltcg lilmlaaltr akrdpgylpi
      181 pasnekslqq dlpnksvrgs snglhgvtis gaasgralng evksycrmsa eklegvkrdw
      241 cakcqlvkpa raghcrlcgr cvrrldhhcv ckvfllsfwr inscvgeqnh qafilalsff
      301 mvtavygitl tlhticrgrt pfvalfycpg aysdysalrk tscdtplsad did
//
LOCUS       XP_053912522             253 aa            linear   VRT 09-MAR-2023
DEFINITION  EEF1A lysine methyltransferase 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912522
VERSION     XP_053912522.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056547.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..253
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..253
                     /product="EEF1A lysine methyltransferase 1 isoform X1"
                     /calculated_mol_wt=28382
     Region          91..203
                     /region_name="N6-adenineMlase"
                     /note="Probable N6-adenine methyltransferase; pfam10237"
                     /db_xref="CDD:463014"
     CDS             1..253
                     /gene="EEF1AKMT1"
                     /coded_by="XM_054056547.1:16..777"
                     /db_xref="GeneID:104055319"
ORIGIN      
        1 mwilppacsp sewtsflssg vvdlegsvlw sklhfvfmgk mddddddipq lsshtlaalq
       61 afyleqqqre giktsqgfnq ysigsieedw qlsqfwysde tasclaneav aaagkggria
      121 cvsapsvyqk lkeqdgkdfs vcileydrrf svygeefify dynhplnlpe nllphsfdiv
      181 iadppylsee clqktaetik yltkgkillc tgaimeelaa khlgvkickf ipkhsrnlan
      241 efrcyvnyas gld
//
LOCUS       XP_053912523             213 aa            linear   VRT 09-MAR-2023
DEFINITION  EEF1A lysine methyltransferase 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912523
VERSION     XP_053912523.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056548.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..213
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..213
                     /product="EEF1A lysine methyltransferase 1 isoform X2"
                     /calculated_mol_wt=23930
     Region          51..163
                     /region_name="N6-adenineMlase"
                     /note="Probable N6-adenine methyltransferase; pfam10237"
                     /db_xref="CDD:463014"
     CDS             1..213
                     /gene="EEF1AKMT1"
                     /coded_by="XM_054056548.1:117..758"
                     /db_xref="GeneID:104055319"
ORIGIN      
        1 mddddddipq lsshtlaalq afyleqqqre giktsqgfnq ysigsieedw qlsqfwysde
       61 tasclaneav aaagkggria cvsapsvyqk lkeqdgkdfs vcileydrrf svygeefify
      121 dynhplnlpe nllphsfdiv iadppylsee clqktaetik yltkgkillc tgaimeelaa
      181 khlgvkickf ipkhsrnlan efrcyvnyas gld
//
LOCUS       XP_009558833             106 aa            linear   VRT 09-MAR-2023
DEFINITION  28S ribosomal protein S33, mitochondrial [Cuculus canorus].
ACCESSION   XP_009558833
VERSION     XP_009558833.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560538.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..106
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..106
                     /product="28S ribosomal protein S33, mitochondrial"
                     /calculated_mol_wt=12530
     Region          6..89
                     /region_name="MRP-S33"
                     /note="Mitochondrial ribosomal subunit S27; pfam08293"
                     /db_xref="CDD:462417"
     CDS             1..106
                     /gene="MRPS33"
                     /coded_by="XM_009560538.2:123..443"
                     /db_xref="GeneID:104058946"
ORIGIN      
        1 mssvssyalr marlsaqifg evvrptdsks mkvvklfseq plakrkevyn wypphntyya
       61 lmkklryfgl yrdehqdfke emrrlkklrg kekpkkgegk ralkkk
//
LOCUS       XP_053912524             222 aa            linear   VRT 09-MAR-2023
DEFINITION  SIN3-HDAC complex-associated factor [Cuculus canorus].
ACCESSION   XP_053912524
VERSION     XP_053912524.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056549.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..222
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..222
                     /product="SIN3-HDAC complex-associated factor"
                     /calculated_mol_wt=24820
     Region          2..198
                     /region_name="FAM60A"
                     /note="Protein Family FAM60A; pfam15396"
                     /db_xref="CDD:464703"
     CDS             1..222
                     /gene="SINHCAF"
                     /coded_by="XM_054056549.1:41..709"
                     /db_xref="GeneID:104056352"
ORIGIN      
        1 mfgfhkpkmy rsiegccicr akssssrftd skryekdfqn cfglhearsg dicnacvllv
       61 krwkklpags kknwnhvvda ragpslkttl kpkkmktlsg sriksnqisk lqkefkrhns
      121 dahsttssas paqspcysnq sddgsdtems agssrtpvfs fldltywkrq kvccgiiykg
      181 rfgevlidth lfkpccsnkk sstekpeqeg pqspaistqe ew
//
LOCUS       XP_053912525             222 aa            linear   VRT 09-MAR-2023
DEFINITION  SIN3-HDAC complex-associated factor [Cuculus canorus].
ACCESSION   XP_053912525
VERSION     XP_053912525.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056550.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..222
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..222
                     /product="SIN3-HDAC complex-associated factor"
                     /calculated_mol_wt=24820
     Region          2..198
                     /region_name="FAM60A"
                     /note="Protein Family FAM60A; pfam15396"
                     /db_xref="CDD:464703"
     CDS             1..222
                     /gene="SINHCAF"
                     /coded_by="XM_054056550.1:117..785"
                     /db_xref="GeneID:104056352"
ORIGIN      
        1 mfgfhkpkmy rsiegccicr akssssrftd skryekdfqn cfglhearsg dicnacvllv
       61 krwkklpags kknwnhvvda ragpslkttl kpkkmktlsg sriksnqisk lqkefkrhns
      121 dahsttssas paqspcysnq sddgsdtems agssrtpvfs fldltywkrq kvccgiiykg
      181 rfgevlidth lfkpccsnkk sstekpeqeg pqspaistqe ew
//
LOCUS       XP_053912526             323 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 239 [Cuculus canorus].
ACCESSION   XP_053912526
VERSION     XP_053912526.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056551.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..323
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..323
                     /product="zinc finger protein 239"
                     /calculated_mol_wt=36120
     Region          <102..261
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          105..125
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(110,112,114,116..117,120..121,124,138,140,144..145,
                     148..149,152,166,168,170,172..173,176..177,180)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          133..153
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          161..181
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          189..209
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          217..237
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          245..265
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          269..>323
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          273..293
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          301..321
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..323
                     /gene="LOC104056021"
                     /coded_by="XM_054056551.1:374..1345"
                     /db_xref="GeneID:104056021"
ORIGIN      
        1 mdqgeeqdhe aleeahmgge fgplphylat kdlqdmfaag srggdeqfgd shgsqhgfpe
       61 aqqgdceeee kanlpcsgis lvkrqerrmv aasrqaprae rpticsecgk gfsrsihliq
      121 hqrmhtgerp flcgecgkgf sqsshliqhr rvhtgqkpyt cvecgksfsq ssnllkhqri
      181 htglkpyvcs ecgkifsdss tcikhqrmht gerpykclac gksfsqhshl lqhqrahdgi
      241 rpytcgqcgk cfgqssdlin harthtgekp ykcsqcgrgf sgnsnlikht rihtgeqpyh
      301 ctqcgesfrf qpqlvrhqkh hte
//
LOCUS       XP_053912527             323 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 239 [Cuculus canorus].
ACCESSION   XP_053912527
VERSION     XP_053912527.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056552.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..323
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..323
                     /product="zinc finger protein 239"
                     /calculated_mol_wt=36120
     Region          <102..261
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          105..125
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(110,112,114,116..117,120..121,124,138,140,144..145,
                     148..149,152,166,168,170,172..173,176..177,180)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          133..153
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          161..181
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          189..209
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          217..237
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          245..265
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          269..>323
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          273..293
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          301..321
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..323
                     /gene="LOC104056021"
                     /coded_by="XM_054056552.1:1498..2469"
                     /db_xref="GeneID:104056021"
ORIGIN      
        1 mdqgeeqdhe aleeahmgge fgplphylat kdlqdmfaag srggdeqfgd shgsqhgfpe
       61 aqqgdceeee kanlpcsgis lvkrqerrmv aasrqaprae rpticsecgk gfsrsihliq
      121 hqrmhtgerp flcgecgkgf sqsshliqhr rvhtgqkpyt cvecgksfsq ssnllkhqri
      181 htglkpyvcs ecgkifsdss tcikhqrmht gerpykclac gksfsqhshl lqhqrahdgi
      241 rpytcgqcgk cfgqssdlin harthtgekp ykcsqcgrgf sgnsnlikht rihtgeqpyh
      301 ctqcgesfrf qpqlvrhqkh hte
//
LOCUS       XP_053912528             323 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 239 [Cuculus canorus].
ACCESSION   XP_053912528
VERSION     XP_053912528.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056553.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..323
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..323
                     /product="zinc finger protein 239"
                     /calculated_mol_wt=36120
     Region          <102..261
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          105..125
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(110,112,114,116..117,120..121,124,138,140,144..145,
                     148..149,152,166,168,170,172..173,176..177,180)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          133..153
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          161..181
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          189..209
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          217..237
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          245..265
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          269..>323
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          273..293
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          301..321
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..323
                     /gene="LOC104056021"
                     /coded_by="XM_054056553.1:940..1911"
                     /db_xref="GeneID:104056021"
ORIGIN      
        1 mdqgeeqdhe aleeahmgge fgplphylat kdlqdmfaag srggdeqfgd shgsqhgfpe
       61 aqqgdceeee kanlpcsgis lvkrqerrmv aasrqaprae rpticsecgk gfsrsihliq
      121 hqrmhtgerp flcgecgkgf sqsshliqhr rvhtgqkpyt cvecgksfsq ssnllkhqri
      181 htglkpyvcs ecgkifsdss tcikhqrmht gerpykclac gksfsqhshl lqhqrahdgi
      241 rpytcgqcgk cfgqssdlin harthtgekp ykcsqcgrgf sgnsnlikht rihtgeqpyh
      301 ctqcgesfrf qpqlvrhqkh hte
//
LOCUS       XP_053912529             323 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 239 [Cuculus canorus].
ACCESSION   XP_053912529
VERSION     XP_053912529.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056554.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..323
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..323
                     /product="zinc finger protein 239"
                     /calculated_mol_wt=36120
     Region          <102..261
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          105..125
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(110,112,114,116..117,120..121,124,138,140,144..145,
                     148..149,152,166,168,170,172..173,176..177,180)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          133..153
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          161..181
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          189..209
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          217..237
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          245..265
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          269..>323
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          273..293
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          301..321
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..323
                     /gene="LOC104056021"
                     /coded_by="XM_054056554.1:449..1420"
                     /db_xref="GeneID:104056021"
ORIGIN      
        1 mdqgeeqdhe aleeahmgge fgplphylat kdlqdmfaag srggdeqfgd shgsqhgfpe
       61 aqqgdceeee kanlpcsgis lvkrqerrmv aasrqaprae rpticsecgk gfsrsihliq
      121 hqrmhtgerp flcgecgkgf sqsshliqhr rvhtgqkpyt cvecgksfsq ssnllkhqri
      181 htglkpyvcs ecgkifsdss tcikhqrmht gerpykclac gksfsqhshl lqhqrahdgi
      241 rpytcgqcgk cfgqssdlin harthtgekp ykcsqcgrgf sgnsnlikht rihtgeqpyh
      301 ctqcgesfrf qpqlvrhqkh hte
//
LOCUS       XP_053912530             323 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 239 [Cuculus canorus].
ACCESSION   XP_053912530
VERSION     XP_053912530.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056555.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..323
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..323
                     /product="zinc finger protein 239"
                     /calculated_mol_wt=36120
     Region          <102..261
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          105..125
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(110,112,114,116..117,120..121,124,138,140,144..145,
                     148..149,152,166,168,170,172..173,176..177,180)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          133..153
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          161..181
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          189..209
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          217..237
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          245..265
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          269..>323
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          273..293
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          301..321
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..323
                     /gene="LOC104056021"
                     /coded_by="XM_054056555.1:371..1342"
                     /db_xref="GeneID:104056021"
ORIGIN      
        1 mdqgeeqdhe aleeahmgge fgplphylat kdlqdmfaag srggdeqfgd shgsqhgfpe
       61 aqqgdceeee kanlpcsgis lvkrqerrmv aasrqaprae rpticsecgk gfsrsihliq
      121 hqrmhtgerp flcgecgkgf sqsshliqhr rvhtgqkpyt cvecgksfsq ssnllkhqri
      181 htglkpyvcs ecgkifsdss tcikhqrmht gerpykclac gksfsqhshl lqhqrahdgi
      241 rpytcgqcgk cfgqssdlin harthtgekp ykcsqcgrgf sgnsnlikht rihtgeqpyh
      301 ctqcgesfrf qpqlvrhqkh hte
//
LOCUS       XP_053912531             323 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 239 [Cuculus canorus].
ACCESSION   XP_053912531
VERSION     XP_053912531.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056556.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..323
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..323
                     /product="zinc finger protein 239"
                     /calculated_mol_wt=36120
     Region          <102..261
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          105..125
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(110,112,114,116..117,120..121,124,138,140,144..145,
                     148..149,152,166,168,170,172..173,176..177,180)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          133..153
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          161..181
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          189..209
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          217..237
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          245..265
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          269..>323
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          273..293
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          301..321
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..323
                     /gene="LOC104056021"
                     /coded_by="XM_054056556.1:1015..1986"
                     /db_xref="GeneID:104056021"
ORIGIN      
        1 mdqgeeqdhe aleeahmgge fgplphylat kdlqdmfaag srggdeqfgd shgsqhgfpe
       61 aqqgdceeee kanlpcsgis lvkrqerrmv aasrqaprae rpticsecgk gfsrsihliq
      121 hqrmhtgerp flcgecgkgf sqsshliqhr rvhtgqkpyt cvecgksfsq ssnllkhqri
      181 htglkpyvcs ecgkifsdss tcikhqrmht gerpykclac gksfsqhshl lqhqrahdgi
      241 rpytcgqcgk cfgqssdlin harthtgekp ykcsqcgrgf sgnsnlikht rihtgeqpyh
      301 ctqcgesfrf qpqlvrhqkh hte
//
LOCUS       XP_053912532             538 aa            linear   VRT 09-MAR-2023
DEFINITION  importin subunit alpha-5 [Cuculus canorus].
ACCESSION   XP_053912532
VERSION     XP_053912532.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056557.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..538
                     /product="importin subunit alpha-5"
                     /calculated_mol_wt=60079
     Region          33..516
                     /region_name="SRP1"
                     /note="Karyopherin (importin) alpha [Intracellular
                     trafficking and secretion]; COG5064"
                     /db_xref="CDD:227396"
     Region          128..154
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     Site            order(145,149,153,187,191,195,230,234,238)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:293788"
     Region          162..198
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     Region          204..239
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     Region          256..281
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     Site            order(272,276,280,314,318,322,356,360,364)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:293788"
     Region          289..325
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     Region          331..365
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     Region          373..409
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     Region          416..450
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     CDS             1..538
                     /gene="KPNA1"
                     /coded_by="XM_054056557.1:25..1641"
                     /db_xref="GeneID:104064379"
ORIGIN      
        1 mttsgkenfr lksyknksln pdemrrrree eglqlrkqkr eeqlfkrrnv ataeeeaeee
       61 vmsdggfhea qmnnmemtss avitsdmiem ifsnspeqql satqkfrkll skepnppide
      121 vistpgvvar fveflkrken ctlqfeaawv ltniasgnsl qtqiviqaga vpifiellss
      181 efedvqeqav walgniagds tmcrdyvldc nilppllqll skqnrltmtr navwalsnlc
      241 rgknpppdfa kvspclsvls wllfvndtdv ladacwalsy lsdgpndkiq avidagvcrr
      301 lvellmhndy kvvspalrav gnivtgddiq tqvilncsal qsllhllssp kesikkeacw
      361 tisnitagnr aqiqtvidah ifpalinilq taefrtrkea awaitnatsg gsaeqikylv
      421 elgcikplcd lltvmdskiv qvalsgleni lrlgeqeskr sgtginpyca lieeaygldk
      481 ieflqshenq eiyqkafdli ehyfgteded ssiapqvdln qqqyifqqce apmdgfql
//
LOCUS       XP_053912533             538 aa            linear   VRT 09-MAR-2023
DEFINITION  importin subunit alpha-5 [Cuculus canorus].
ACCESSION   XP_053912533
VERSION     XP_053912533.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056558.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..538
                     /product="importin subunit alpha-5"
                     /calculated_mol_wt=60079
     Region          33..516
                     /region_name="SRP1"
                     /note="Karyopherin (importin) alpha [Intracellular
                     trafficking and secretion]; COG5064"
                     /db_xref="CDD:227396"
     Region          128..154
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     Site            order(145,149,153,187,191,195,230,234,238)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:293788"
     Region          162..198
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     Region          204..239
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     Region          256..281
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     Site            order(272,276,280,314,318,322,356,360,364)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:293788"
     Region          289..325
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     Region          331..365
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     Region          373..409
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     Region          416..450
                     /region_name="armadillo repeat"
                     /note="armadillo repeat [structural motif]"
                     /db_xref="CDD:293788"
     CDS             1..538
                     /gene="KPNA1"
                     /coded_by="XM_054056558.1:131..1747"
                     /db_xref="GeneID:104064379"
ORIGIN      
        1 mttsgkenfr lksyknksln pdemrrrree eglqlrkqkr eeqlfkrrnv ataeeeaeee
       61 vmsdggfhea qmnnmemtss avitsdmiem ifsnspeqql satqkfrkll skepnppide
      121 vistpgvvar fveflkrken ctlqfeaawv ltniasgnsl qtqiviqaga vpifiellss
      181 efedvqeqav walgniagds tmcrdyvldc nilppllqll skqnrltmtr navwalsnlc
      241 rgknpppdfa kvspclsvls wllfvndtdv ladacwalsy lsdgpndkiq avidagvcrr
      301 lvellmhndy kvvspalrav gnivtgddiq tqvilncsal qsllhllssp kesikkeacw
      361 tisnitagnr aqiqtvidah ifpalinilq taefrtrkea awaitnatsg gsaeqikylv
      421 elgcikplcd lltvmdskiv qvalsgleni lrlgeqeskr sgtginpyca lieeaygldk
      481 ieflqshenq eiyqkafdli ehyfgteded ssiapqvdln qqqyifqqce apmdgfql
//
LOCUS       XP_053912534             188 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM162A isoform X1 [Cuculus canorus].
ACCESSION   XP_053912534
VERSION     XP_053912534.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056559.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..188
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..188
                     /product="protein FAM162A isoform X1"
                     /calculated_mol_wt=20710
     Region          50..169
                     /region_name="DUF1075"
                     /note="Protein of unknown function (DUF1075); pfam06388"
                     /db_xref="CDD:461893"
     CDS             1..188
                     /gene="FAM162A"
                     /coded_by="XM_054056559.1:16..582"
                     /db_xref="GeneID:104064380"
ORIGIN      
        1 mvheklnmsr qcalavqkas svlgclkssm tsrgkggdsa plfcsgtavk llgrnipsil
       61 smtkaadlki srrfciksqe esqlqprsrp tlkvpghkpt dwekkfllwa gnykkpedip
      121 etvsietira akttlrvkfs yvmialtilg ciimvikgkq avkrheslts inlekkaqwr
      181 deatsakp
//
LOCUS       XP_053912535             148 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM162A isoform X2 [Cuculus canorus].
ACCESSION   XP_053912535
VERSION     XP_053912535.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056560.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..148
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..148
                     /product="protein FAM162A isoform X2"
                     /calculated_mol_wt=16532
     Region          10..129
                     /region_name="DUF1075"
                     /note="Protein of unknown function (DUF1075); pfam06388"
                     /db_xref="CDD:461893"
     CDS             1..148
                     /gene="FAM162A"
                     /coded_by="XM_054056560.1:189..635"
                     /db_xref="GeneID:104064380"
ORIGIN      
        1 mgsrsgtavk llgrnipsil smtkaadlki srrfciksqe esqlqprsrp tlkvpghkpt
       61 dwekkfllwa gnykkpedip etvsietira akttlrvkfs yvmialtilg ciimvikgkq
      121 avkrheslts inlekkaqwr deatsakp
//
LOCUS       XP_053912536             127 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM162A isoform X3 [Cuculus canorus].
ACCESSION   XP_053912536
VERSION     XP_053912536.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056561.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..127
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..127
                     /product="protein FAM162A isoform X3"
                     /calculated_mol_wt=14392
     Region          1..108
                     /region_name="DUF1075"
                     /note="Protein of unknown function (DUF1075); pfam06388"
                     /db_xref="CDD:461893"
     CDS             1..127
                     /gene="FAM162A"
                     /coded_by="XM_054056561.1:259..642"
                     /db_xref="GeneID:104064380"
ORIGIN      
        1 mtkaadlkis rrfciksqee sqlqprsrpt lkvpghkptd wekkfllwag nykkpedipe
       61 tvsietiraa kttlrvkfsy vmialtilgc iimvikgkqa vkrhesltsi nlekkaqwrd
      121 eatsakp
//
LOCUS       XP_053912537             173 aa            linear   VRT 09-MAR-2023
DEFINITION  protein MIX23 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912537
VERSION     XP_053912537.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056562.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..173
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..173
                     /product="protein MIX23 isoform X1"
                     /calculated_mol_wt=19882
     Region          10..129
                     /region_name="MIX23"
                     /note="Intermembrane space protein MIX23; pfam09774"
                     /db_xref="CDD:430815"
     CDS             1..173
                     /gene="MIX23"
                     /coded_by="XM_054056562.1:103..624"
                     /db_xref="GeneID:104064381"
ORIGIN      
        1 maapsgtasc edfaefqefl rvmrtiddri vhelnttipt asfvgkidag qtckelyqsl
       61 mdahtsreri iknciaqtss vvktlreere kaqdnvallk qlrkeqtklk lmqselnvee
      121 vvndrswkvr pklekevgrr ypiflavlyr yqmvlgtnyc ikktlpmyls sfl
//
LOCUS       XP_053912538             156 aa            linear   VRT 09-MAR-2023
DEFINITION  protein MIX23 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912538
VERSION     XP_053912538.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056563.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..156
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..156
                     /product="protein MIX23 isoform X2"
                     /calculated_mol_wt=17887
     Region          10..129
                     /region_name="MIX23"
                     /note="Intermembrane space protein MIX23; pfam09774"
                     /db_xref="CDD:430815"
     CDS             1..156
                     /gene="MIX23"
                     /coded_by="XM_054056563.1:103..573"
                     /db_xref="GeneID:104064381"
ORIGIN      
        1 maapsgtasc edfaefqefl rvmrtiddri vhelnttipt asfvgkidag qtckelyqsl
       61 mdahtsreri iknciaqtss vvktlreere kaqdnvallk qlrkeqtklk lmqselnvee
      121 vvndrswkvr pklekevgrr ypiflavlyr kpcrci
//
LOCUS       XP_053912539             153 aa            linear   VRT 09-MAR-2023
DEFINITION  protein MIX23 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912539
VERSION     XP_053912539.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056564.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..153
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..153
                     /product="protein MIX23 isoform X3"
                     /calculated_mol_wt=16842
     Region          10..>77
                     /region_name="MIX23"
                     /note="Intermembrane space protein MIX23; pfam09774"
                     /db_xref="CDD:430815"
     CDS             1..153
                     /gene="MIX23"
                     /coded_by="XM_054056564.1:103..564"
                     /db_xref="GeneID:104064381"
ORIGIN      
        1 maapsgtasc edfaefqefl rvmrtiddri vhelnttipt asfvgkidag qtckelyqsl
       61 mdahtsreri iknciaqtss vvktlreere kaqdnvallk qlrkeqtkwp gvsvvfsslv
      121 slplmkdvlt raarpgplsf qcnvkidavg aec
//
LOCUS       XP_053912540             153 aa            linear   VRT 09-MAR-2023
DEFINITION  protein MIX23 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912540
VERSION     XP_053912540.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056565.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..153
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..153
                     /product="protein MIX23 isoform X3"
                     /calculated_mol_wt=16842
     Region          10..>77
                     /region_name="MIX23"
                     /note="Intermembrane space protein MIX23; pfam09774"
                     /db_xref="CDD:430815"
     CDS             1..153
                     /gene="MIX23"
                     /coded_by="XM_054056565.1:103..564"
                     /db_xref="GeneID:104064381"
ORIGIN      
        1 maapsgtasc edfaefqefl rvmrtiddri vhelnttipt asfvgkidag qtckelyqsl
       61 mdahtsreri iknciaqtss vvktlreere kaqdnvallk qlrkeqtkwp gvsvvfsslv
      121 slplmkdvlt raarpgplsf qcnvkidavg aec
//
LOCUS       XP_053912541             144 aa            linear   VRT 09-MAR-2023
DEFINITION  protein MIX23 isoform X4 [Cuculus canorus].
ACCESSION   XP_053912541
VERSION     XP_053912541.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056566.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..144
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..144
                     /product="protein MIX23 isoform X4"
                     /calculated_mol_wt=16485
     Region          10..134
                     /region_name="MIX23"
                     /note="Intermembrane space protein MIX23; pfam09774"
                     /db_xref="CDD:430815"
     CDS             1..144
                     /gene="MIX23"
                     /coded_by="XM_054056566.1:103..537"
                     /db_xref="GeneID:104064381"
ORIGIN      
        1 maapsgtasc edfaefqefl rvmrtiddri vhelnttipt asfvgkidag qtckelyqsl
       61 mdahtsreri iknciaqtss vvktlreere kaqdnvallk qlrkeqtklk lmqselnvee
      121 vvndrswkvf nercrihykp pksq
//
LOCUS       XP_053912543             141 aa            linear   VRT 09-MAR-2023
DEFINITION  protein MIX23 isoform X5 [Cuculus canorus].
ACCESSION   XP_053912543
VERSION     XP_053912543.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056568.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..141
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..141
                     /product="protein MIX23 isoform X5"
                     /calculated_mol_wt=16016
     Region          78..>130
                     /region_name="CY"
                     /note="Cystatin-like domain; Cystatins are a family of
                     cysteine protease inhibitors that occur mainly as single
                     domain proteins. However some extracellular proteins such
                     as kininogen, His-rich glycoprotein and fetuin also
                     contain these domains; cl09238"
                     /db_xref="CDD:447698"
     CDS             1..141
                     /gene="MIX23"
                     /coded_by="XM_054056568.1:947..1372"
                     /db_xref="GeneID:104064381"
ORIGIN      
        1 mtacfllifk sewcwemlsa tlirflstet gssryksydr mppvyipgaw clcsdctegp
       61 ssekpltaet lpatimsgqf sdpmtptpei qeianrvrpk lekevgrryp iflavlyryq
      121 mvlgtnycik ktlpmylssf l
//
LOCUS       XP_053912544             500 aa            linear   VRT 09-MAR-2023
DEFINITION  glycine receptor subunit alpha-2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912544
VERSION     XP_053912544.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056569.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..500
                     /product="glycine receptor subunit alpha-2 isoform X1"
                     /calculated_mol_wt=57132
     Region          46..489
                     /region_name="LIC"
                     /note="Cation transporter family protein; TIGR00860"
                     /db_xref="CDD:273305"
     CDS             1..500
                     /gene="GLRA2"
                     /coded_by="XM_054056569.1:590..2092"
                     /db_xref="GeneID:104054898"
ORIGIN      
        1 mnrqlvkilt tlfaffletn hfrtsfckeh dsrsgkspsq tlspsdfldk lmgrtsgyda
       61 rirpnfkgpp vnvtcnifin sfgsvtettm dyrvniflrq qwndsrlays eypddsldld
      121 psmldsiwkp dlffanekga nfhdvttdnk llrisktgkv lysirltltl scpmdlknfp
      181 mdvqtctmql esfgytmndl ifewlsdgpv qvaegltlpq filkedkelg yctkhyntgk
      241 ftcievkfhl erqmgyyliq myipsllivi lswvsfwinm daaparvalg ittvltmttq
      301 ssgsraslpk vsyvkaidiw mavcllfvfa alleyaavnf vsrqhkeflr lrrrqrrqnk
      361 aqtmtvgnes iesvrrmngl rskessaygt vnqignsslr mstvqqnled evtrdsrfnf
      421 sgygmghclq vkdgtavkat ppnpppappk dsesikkkfv drakridtis raafplafli
      481 fnifywityk iirhedihkk
//
LOCUS       XP_053912545             500 aa            linear   VRT 09-MAR-2023
DEFINITION  glycine receptor subunit alpha-2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912545
VERSION     XP_053912545.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056570.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..500
                     /product="glycine receptor subunit alpha-2 isoform X2"
                     /calculated_mol_wt=57116
     Region          46..489
                     /region_name="LIC"
                     /note="Cation transporter family protein; TIGR00860"
                     /db_xref="CDD:273305"
     CDS             1..500
                     /gene="GLRA2"
                     /coded_by="XM_054056570.1:590..2092"
                     /db_xref="GeneID:104054898"
ORIGIN      
        1 mnrqlvkilt tlfaffletn hfrtsfckeh dsrsgkspsq tlspsdfldk lmgrtsgyda
       61 rirpnfkgpp vnvtcnifin sfgsiaettm dyrvniflrq qwndsrlays eypddsldld
      121 psmldsiwkp dlffanekga nfhdvttdnk llrisktgkv lysirltltl scpmdlknfp
      181 mdvqtctmql esfgytmndl ifewlsdgpv qvaegltlpq filkedkelg yctkhyntgk
      241 ftcievkfhl erqmgyyliq myipsllivi lswvsfwinm daaparvalg ittvltmttq
      301 ssgsraslpk vsyvkaidiw mavcllfvfa alleyaavnf vsrqhkeflr lrrrqrrqnk
      361 aqtmtvgnes iesvrrmngl rskessaygt vnqignsslr mstvqqnled evtrdsrfnf
      421 sgygmghclq vkdgtavkat ppnpppappk dsesikkkfv drakridtis raafplafli
      481 fnifywityk iirhedihkk
//
LOCUS       XP_053912546             492 aa            linear   VRT 09-MAR-2023
DEFINITION  glycine receptor subunit alpha-2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912546
VERSION     XP_053912546.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056571.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..492
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..492
                     /product="glycine receptor subunit alpha-2 isoform X3"
                     /calculated_mol_wt=56230
     Region          46..481
                     /region_name="LIC"
                     /note="Cation transporter family protein; TIGR00860"
                     /db_xref="CDD:273305"
     CDS             1..492
                     /gene="GLRA2"
                     /coded_by="XM_054056571.1:589..2067"
                     /db_xref="GeneID:104054898"
ORIGIN      
        1 mnrqlvkilt tlfaffletn hfrtsfckeh dsrsgkspsq tlspsdfldk lmgrtsgyda
       61 rirpnfkgpp vnvtcnifin sfgsvtettm dyrvniflrq qwndsrlays eypddsldld
      121 psmldsiwkp dlffanekga nfhdvttdnk llrisktgkv lysirltltl scpmdlknfp
      181 mdvqtctmql esfgytmndl ifewlsdgpv qvaegltlpq filkedkelg yctkhyntgk
      241 ftcievkfhl erqmgyyliq myipsllivi lswvsfwinm daaparvalg ittvltmttq
      301 ssgsraslpk vsyvkaidiw mavcllfvfa alleyaavnf vsrqhkeflr lrrrqrrqnk
      361 aqtmtvgnes iesvrrmngl rskessaygt vnqignsslr edevtrdsrf nfsgygmghc
      421 lqvkdgtavk atppnpppap pkdsesikkk fvdrakridt israafplaf lifnifywit
      481 ykiirhedih kk
//
LOCUS       XP_053912547             492 aa            linear   VRT 09-MAR-2023
DEFINITION  glycine receptor subunit alpha-2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053912547
VERSION     XP_053912547.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056572.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..492
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..492
                     /product="glycine receptor subunit alpha-2 isoform X4"
                     /calculated_mol_wt=56214
     Region          46..481
                     /region_name="LIC"
                     /note="Cation transporter family protein; TIGR00860"
                     /db_xref="CDD:273305"
     CDS             1..492
                     /gene="GLRA2"
                     /coded_by="XM_054056572.1:589..2067"
                     /db_xref="GeneID:104054898"
ORIGIN      
        1 mnrqlvkilt tlfaffletn hfrtsfckeh dsrsgkspsq tlspsdfldk lmgrtsgyda
       61 rirpnfkgpp vnvtcnifin sfgsiaettm dyrvniflrq qwndsrlays eypddsldld
      121 psmldsiwkp dlffanekga nfhdvttdnk llrisktgkv lysirltltl scpmdlknfp
      181 mdvqtctmql esfgytmndl ifewlsdgpv qvaegltlpq filkedkelg yctkhyntgk
      241 ftcievkfhl erqmgyyliq myipsllivi lswvsfwinm daaparvalg ittvltmttq
      301 ssgsraslpk vsyvkaidiw mavcllfvfa alleyaavnf vsrqhkeflr lrrrqrrqnk
      361 aqtmtvgnes iesvrrmngl rskessaygt vnqignsslr edevtrdsrf nfsgygmghc
      421 lqvkdgtavk atppnpppap pkdsesikkk fvdrakridt israafplaf lifnifywit
      481 ykiirhedih kk
//
LOCUS       XP_053912548             454 aa            linear   VRT 09-MAR-2023
DEFINITION  glycine receptor subunit alpha-2 isoform X5 [Cuculus canorus].
ACCESSION   XP_053912548
VERSION     XP_053912548.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056573.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..454
                     /product="glycine receptor subunit alpha-2 isoform X5"
                     /calculated_mol_wt=51683
     Region          46..443
                     /region_name="LIC"
                     /note="Cation transporter family protein; cl42365"
                     /db_xref="CDD:455710"
     CDS             1..454
                     /gene="GLRA2"
                     /coded_by="XM_054056573.1:591..1955"
                     /db_xref="GeneID:104054898"
ORIGIN      
        1 mnrqlvkilt tlfaffletn hfrtsfckeh dsrsgkspsq tlspsdfldk lmgrtsgyda
       61 rirpnfkgpp vnvtcnifin sfgsvtettm dyrvniflrq qwndsrlays eypddsldld
      121 psmldsiwkp dlffanekga nfhdvttdnk llrisktgkv lysirltltl scpmdlknfp
      181 mdvqtctmql esfgytmndl ifewlsdgpv qvaegltlpq filkedkelg yctkhyntar
      241 valgittvlt mttqssgsra slpkvsyvka idiwmavcll fvfaalleya avnfvsrqhk
      301 eflrlrrrqr rqnkaqtmtv gnesiesvrr mnglrskess aygtvnqign sslrmstvqq
      361 nledevtrds rfnfsgygmg hclqvkdgta vkatppnppp appkdsesik kkfvdrakri
      421 dtisraafpl aflifnifyw itykiirhed ihkk
//
LOCUS       XP_009554259             452 aa            linear   VRT 09-MAR-2023
DEFINITION  glycine receptor subunit alpha-2 isoform X6 [Cuculus canorus].
ACCESSION   XP_009554259
VERSION     XP_009554259.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009555964.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..452
                     /product="glycine receptor subunit alpha-2 isoform X6"
                     /calculated_mol_wt=51918
     Region          46..441
                     /region_name="LIC"
                     /note="Cation transporter family protein; TIGR00860"
                     /db_xref="CDD:273305"
     CDS             1..452
                     /gene="GLRA2"
                     /coded_by="XM_009555964.2:589..1947"
                     /db_xref="GeneID:104054898"
ORIGIN      
        1 mnrqlvkilt tlfaffletn hfrtsfckeh dsrsgkspsq tlspsdfldk lmgrtsgyda
       61 rirpnfkgpp vnvtcnifin sfgsvtettm dyrvniflrq qwndsrlays eypddsldld
      121 psmldsiwkp dlffanekga nfhdvttdnk llrisktgkv lysirltltl scpmdlknfp
      181 mdvqtctmql esfgytmndl ifewlsdgpv qvaegltlpq filkedkelg yctkhyntgk
      241 ftcievkfhl erqmgyyliq myipsllivi lswvsfwinm daaparvalg ittvltmttq
      301 ssgsraslpk vsyvkaidiw mavcllfvfa alleyaavnf vsrqhkeflr lrrrqrrqnk
      361 edevtrdsrf nfsgygmghc lqvkdgtavk atppnpppap pkdsesikkk fvdrakridt
      421 israafplaf lifnifywit ykiirhedih kk
//
LOCUS       XP_009554261             452 aa            linear   VRT 09-MAR-2023
DEFINITION  glycine receptor subunit alpha-2 isoform X7 [Cuculus canorus].
ACCESSION   XP_009554261
VERSION     XP_009554261.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009555966.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..452
                     /product="glycine receptor subunit alpha-2 isoform X7"
                     /calculated_mol_wt=51902
     Region          46..441
                     /region_name="LIC"
                     /note="Cation transporter family protein; TIGR00860"
                     /db_xref="CDD:273305"
     CDS             1..452
                     /gene="GLRA2"
                     /coded_by="XM_009555966.2:589..1947"
                     /db_xref="GeneID:104054898"
ORIGIN      
        1 mnrqlvkilt tlfaffletn hfrtsfckeh dsrsgkspsq tlspsdfldk lmgrtsgyda
       61 rirpnfkgpp vnvtcnifin sfgsiaettm dyrvniflrq qwndsrlays eypddsldld
      121 psmldsiwkp dlffanekga nfhdvttdnk llrisktgkv lysirltltl scpmdlknfp
      181 mdvqtctmql esfgytmndl ifewlsdgpv qvaegltlpq filkedkelg yctkhyntgk
      241 ftcievkfhl erqmgyyliq myipsllivi lswvsfwinm daaparvalg ittvltmttq
      301 ssgsraslpk vsyvkaidiw mavcllfvfa alleyaavnf vsrqhkeflr lrrrqrrqnk
      361 edevtrdsrf nfsgygmghc lqvkdgtavk atppnpppap pkdsesikkk fvdrakridt
      421 israafplaf lifnifywit ykiirhedih kk
//
LOCUS       XP_053912549             420 aa            linear   VRT 09-MAR-2023
DEFINITION  glycine receptor subunit alpha-2 isoform X8 [Cuculus canorus].
ACCESSION   XP_053912549
VERSION     XP_053912549.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056574.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..420
                     /product="glycine receptor subunit alpha-2 isoform X8"
                     /calculated_mol_wt=48157
     Region          6..409
                     /region_name="LIC"
                     /note="Cation transporter family protein; cl42365"
                     /db_xref="CDD:455710"
     CDS             1..420
                     /gene="GLRA2"
                     /coded_by="XM_054056574.1:762..2024"
                     /db_xref="GeneID:104054898"
ORIGIN      
        1 mmlesdqilk dyrvniflrq qwndsrlays eypddsldld psmldsiwkp dlffanekga
       61 nfhdvttdnk llrisktgkv lysirltltl scpmdlknfp mdvqtctmql esfgytmndl
      121 ifewlsdgpv qvaegltlpq filkedkelg yctkhyntgk ftcievkfhl erqmgyyliq
      181 myipsllivi lswvsfwinm daaparvalg ittvltmttq ssgsraslpk vsyvkaidiw
      241 mavcllfvfa alleyaavnf vsrqhkeflr lrrrqrrqnk aqtmtvgnes iesvrrmngl
      301 rskessaygt vnqignsslr mstvqqnled evtrdsrfnf sgygmghclq vkdgtavkat
      361 ppnpppappk dsesikkkfv drakridtis raafplafli fnifywityk iirhedihkk
//
LOCUS       XP_053912550             411 aa            linear   VRT 09-MAR-2023
DEFINITION  glycine receptor subunit alpha-2 isoform X9 [Cuculus canorus].
ACCESSION   XP_053912550
VERSION     XP_053912550.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056575.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..411
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..411
                     /product="glycine receptor subunit alpha-2 isoform X9"
                     /calculated_mol_wt=47099
     Region          1..400
                     /region_name="LIC"
                     /note="Cation transporter family protein; cl42365"
                     /db_xref="CDD:455710"
     CDS             1..411
                     /gene="GLRA2"
                     /coded_by="XM_054056575.1:202..1437"
                     /db_xref="GeneID:104054898"
ORIGIN      
        1 mdyrvniflr qqwndsrlay seypddsldl dpsmldsiwk pdlffanekg anfhdvttdn
       61 kllrisktgk vlysirltlt lscpmdlknf pmdvqtctmq lesfgytmnd lifewlsdgp
      121 vqvaegltlp qfilkedkel gyctkhyntg kftcievkfh lerqmgyyli qmyipslliv
      181 ilswvsfwin mdaaparval gittvltmtt qssgsraslp kvsyvkaidi wmavcllfvf
      241 aalleyaavn fvsrqhkefl rlrrrqrrqn kaqtmtvgne siesvrrmng lrskessayg
      301 tvnqignssl rmstvqqnle devtrdsrfn fsgygmghcl qvkdgtavka tppnpppapp
      361 kdsesikkkf vdrakridti sraafplafl ifnifywity kiirhedihk k
//
LOCUS       XP_053912551             709 aa            linear   VRT 09-MAR-2023
DEFINITION  guanylate cyclase soluble subunit alpha-2 [Cuculus canorus].
ACCESSION   XP_053912551
VERSION     XP_053912551.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056576.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..709
                     /product="guanylate cyclase soluble subunit alpha-2"
                     /calculated_mol_wt=79598
     Region          <113..247
                     /region_name="HNOB"
                     /note="Haem-NO-binding; pfam07700"
                     /db_xref="CDD:462233"
     Region          293..480
                     /region_name="HNOBA"
                     /note="Heme NO binding associated; pfam07701"
                     /db_xref="CDD:462234"
     Region          491..675
                     /region_name="Guanylate_cyc"
                     /note="Adenylate and Guanylate cyclase catalytic domain;
                     pfam00211"
                     /db_xref="CDD:425528"
     Site            order(501,503..508,543,545..547,550,612..614,618..619,
                     622..623,660)
                     /site_type="active"
                     /note="nucleotidyl binding site [active]"
                     /db_xref="CDD:143636"
     Site            order(503,547)
                     /site_type="metal-binding"
                     /note="metal binding site [ion binding]"
                     /db_xref="CDD:143636"
     Site            order(508,520,523..524,527,531,543..544,600,603,613..616,
                     619,660)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:143636"
     CDS             1..709
                     /gene="GUCY1A2"
                     /coded_by="XM_054056576.1:187..2316"
                     /db_xref="GeneID:104055362"
ORIGIN      
        1 msrrkisses fsslgsdcpe tspeeegecp lsrlcwngsr sppgqadipf agarraprrr
       61 rvnldslges irrltapape tirqtlqrtl qyfehqvigy rdaeknfhni snrcsytdcs
      121 gneetedvsg ilqctanvlg lkfeemqekf geeffnicfd enervlravg gtlqdffngf
      181 dallehirts fgrqatlesp sflckelpeg nlmlhyfhph qivgfammgm ikaaakkiyh
      241 leveveqvan dklcsegmnp gncscltfli kecenanitk alppgtsqsp ldlrisistf
      301 crafpfhlmf dpnmlvlqlg eglrkqlrcd thktlkfqdc fdivspkisa tfervllrls
      361 tpfvirtkle dsgseskdkv meikgqmihv pesnsilflg spcvdkldel mgrglhlsdi
      421 pihdatrdvi lvgeqakaqd glkkrmdklk atlecthqal eeekkktvdl lisifpeeva
      481 qqlwqgqqvq arkfddvtml fsdivgftai caqctpmqvi smlnelytrf dhqcgfldiy
      541 kvetigdayc vaaglhkksl shakaialma lkmmelseev ltpdgspikm rigihsgsvl
      601 agvvgvrmpr yclfgnnvtl askfesgshp rrinvsptty qllkkeenfi fiprsreelp
      661 enfpkeipgi cyflevrsgq kppkpsvtst rvrkvsynig tmflretsl
//
LOCUS       XP_053912552             314 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 71L [Cuculus canorus].
ACCESSION   XP_053912552
VERSION     XP_053912552.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056577.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..314
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..314
                     /product="coiled-coil domain-containing protein 71L"
                     /calculated_mol_wt=33314
     Region          115..>182
                     /region_name="CCDC71L"
                     /note="Coiled-coil domain-containing protein 71L;
                     pfam15374"
                     /db_xref="CDD:464682"
     CDS             1..314
                     /gene="CCDC71L"
                     /coded_by="XM_054056577.1:656..1600"
                     /db_xref="GeneID:128850959"
ORIGIN      
        1 magrqqgegs laiwgsplsp plpspprgrg rprvtrfkrp nrrrggggtr pppgalnrhf
       61 vtgggesiva aeaarpsaav sasmtrsrkr aapesgaasm dreaggaaga agqaekvvys
      121 rsqvsfagtk algdalklfm pkstefmssd selwnflcsl khqfspvilr skdvygyasc
      181 ravvpdpper prrraarppp psgpapggrr rrrrrrrrwk grggrraaag gggagisgdr
      241 ggagaaweal gggrsleeiw kaatprlttf ptvrvrgsvw srrslaaarr raqrilgvdl
      301 spvvrlrrfp vaps
//
LOCUS       XP_009569853             718 aa            linear   VRT 09-MAR-2023
DEFINITION  GAS2-like protein 3 [Cuculus canorus].
ACCESSION   XP_009569853
VERSION     XP_009569853.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009571558.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009569853.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..718
                     /product="GAS2-like protein 3"
                     /calculated_mol_wt=77155
     Region          48..177
                     /region_name="CH_GAS2L3"
                     /note="calponin homology (CH) domain found in growth
                     arrest-specific protein 2-like 3; cd21269"
                     /db_xref="CDD:409118"
     Site            order(54,58,125,127..128,131..132,134,144..152,158,
                     160..161,163..164,167..168,171)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409118"
     Region          218..287
                     /region_name="GAS2"
                     /note="Growth-Arrest-Specific Protein 2 Domain; pfam02187"
                     /db_xref="CDD:460480"
     Region          <334..679
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..718
                     /gene="GAS2L3"
                     /coded_by="XM_009571558.2:95..2251"
                     /db_xref="GeneID:104068654"
ORIGIN      
        1 mqmtmqhavq vwfgddfpls prspltprhg pgladvclyd qwisvrheat lvpmqedlsi
       61 wlsdllgiev kaeqlleeld ngvllcqlvg vlqnivkesc rsnnlrnfpm rkvpckkdap
      121 agsffardnt anflnwcrai gvdetylfes eglvlhkdpr qvylclleig rivssygvep
      181 pvlvklekei eleetllmts gppspvttak scchhgelhe avkhiaedpp cscshrfsie
      241 ylsegryrlg dkilfirmlh gkhvmvrvgg gwdtlqgfll kydpcrvlqf atleqkilaf
      301 qkgvtsdnvp sssarvqepp lmnpmsavnm fqkqpskpst plsalgatan kplckrpqsp
      361 altspkvpvp ssstakslta rsklkgssvt svqspfkpls gtskklepta rnspasapsq
      421 pvskssssag irtalvhset lrkrirspda pkakfalpqg spgaalppal ssskkqlsrl
      481 pgtaervask qkhvpakskp vsiaktkvns vasratrlpa tnlgavakfa hsqqlvtkpp
      541 enaiqtsetg srhpqkasqt asdlarnlks asvlkhsasa psltvskask lpsmlvstsk
      601 nassavnkqp nvskphqags asskppertp lsvvrlpqta akatvtkkpa qpstkgqpst
      661 knlqasessa paakkplpkg ksamacnkgm pavskgtlmk srqddhyfvm tgskkprk
//
LOCUS       XP_009555272             248 aa            linear   VRT 09-MAR-2023
DEFINITION  neuromodulin [Cuculus canorus].
ACCESSION   XP_009555272
VERSION     XP_009555272.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556977.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555272.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..248
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..248
                     /product="neuromodulin"
                     /calculated_mol_wt=25653
     Region          2..32
                     /region_name="Neuromodulin_N"
                     /note="Gap junction protein N-terminal region; pfam10580"
                     /db_xref="CDD:431370"
     Region          31..53
                     /region_name="IQ"
                     /note="Calmodulin-binding motif; smart00015"
                     /db_xref="CDD:197470"
     Region          69..248
                     /region_name="Neuromodulin"
                     /note="pfam06614"
                     /db_xref="CDD:461961"
     CDS             1..248
                     /gene="GAP43"
                     /coded_by="XM_009556977.2:76..822"
                     /db_xref="GeneID:104055799"
ORIGIN      
        1 mlccmrrtkq veknedgdqk ieqdgikped kahkaatkiq asfrghitrk klkgekkgda
       61 pasetdaadk keegpaggaa enkeseapta tevaaadsaq leegskdssa paeekkgdga
      121 antgseqpap qaatpaasse ekptaaaaae tesatkastd nspslkadea qdkeepkqad
      181 vpaadttatt tpaaadatak ataqpqmetv essqteektd aveetkptes aqqeevkeee
      241 skadqena
//
LOCUS       XP_053912554             171 aa            linear   VRT 09-MAR-2023
DEFINITION  diamine acetyltransferase 1 [Cuculus canorus].
ACCESSION   XP_053912554
VERSION     XP_053912554.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056579.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..171
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..171
                     /product="diamine acetyltransferase 1"
                     /calculated_mol_wt=19856
     Region          3..153
                     /region_name="MnaT"
                     /note="L-amino acid N-acyltransferase MnaT [Amino acid
                     transport and metabolism]; COG1247"
                     /db_xref="CDD:440860"
     CDS             1..171
                     /gene="SAT1"
                     /coded_by="XM_054056579.1:208..723"
                     /db_xref="GeneID:104059412"
ORIGIN      
        1 masfsiraar pedcpdllrl ikelakyeem edqvvlteke lledgfgehp fyhclvaevp
       61 keqwsaeghs vvgfamyyft ydpwigklly ledfyvmaey rglgigseil knlsqvavrc
      121 rcssmhflva ewnepsirfy krrgasdlst eegwrlfkid keyllkmate e
//
LOCUS       XP_053912555             205 aa            linear   VRT 09-MAR-2023
DEFINITION  39S ribosomal protein L48, mitochondrial [Cuculus canorus].
ACCESSION   XP_053912555
VERSION     XP_053912555.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056580.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..205
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..205
                     /product="39S ribosomal protein L48, mitochondrial"
                     /calculated_mol_wt=23190
     Region          85..180
                     /region_name="Ribosomal_S10"
                     /note="Ribosomal protein S10p/S20e; pfam00338"
                     /db_xref="CDD:459769"
     CDS             1..205
                     /gene="MRPL48"
                     /coded_by="XM_054056580.1:67..684"
                     /db_xref="GeneID:104064112"
ORIGIN      
        1 mlclmkgmll kqvfalsraa tpreshlcaa ggalvschrh yrsrpthgig rfkyllpkea
       61 pkkkkdkvqm keidvgtehe ygdlniqmts ydmclvehfa qyvhrlcnql svrvkesyam
      121 ptktnevlfl eergskmqld avltthqrvv qisglsstfa pilleviqsn qpegvhllvk
      181 ehteadfksr lksrpeleel laqms
//
LOCUS       XP_053912556             369 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA damage-regulated autophagy modulator protein 1 [Cuculus
            canorus].
ACCESSION   XP_053912556
VERSION     XP_053912556.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056581.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..369
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..369
                     /product="DNA damage-regulated autophagy modulator protein
                     1"
                     /calculated_mol_wt=39824
     Region          137..354
                     /region_name="Frag1"
                     /note="Frag1/DRAM/Sfk1 family; pfam10277"
                     /db_xref="CDD:431193"
     CDS             1..369
                     /gene="DRAM1"
                     /coded_by="XM_054056581.1:18..1127"
                     /db_xref="GeneID:104058959"
ORIGIN      
        1 milttnaqta gsprsprgkr krregllgvh qklseespge rdllraalaa rapaggagea
       61 kakgraaggi sgavgaaqrr cpagkhvwep vrigvrgfvs pvsprsrsas rrrrggalpp
      121 mmpgarrppa mlcsmpgvaf vpallvgwss aafiisyvia vlaghveplv pyisdtgtkp
      181 pesgifgfmi nisallgait myirylliek qnesshfiss scnmfslcig lmgctgmgiv
      241 atfqelavps vhdigalvaf gsgvvyitlq siisykscpq wntyfvchvr maislvscia
      301 fipmivfasr ismtkidwtp gekdytyhfl saicewtvaf gfifffltfi rdfqrvslri
      361 steihedsw
//
LOCUS       XP_053912557             505 aa            linear   VRT 09-MAR-2023
DEFINITION  arylsulfatase A [Cuculus canorus].
ACCESSION   XP_053912557
VERSION     XP_053912557.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056582.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..505
                     /product="arylsulfatase A"
                     /calculated_mol_wt=54380
     Region          25..505
                     /region_name="ARSA"
                     /note="Arylsulfatase A or cerebroside-sulfatase; cd16158"
                     /db_xref="CDD:293777"
     Site            order(33..34,73,127,129,154,233,285..286,306..307)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:293777"
     Site            order(73,127,129,154,233,306..307)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:293777"
     CDS             1..505
                     /gene="ARSA"
                     /coded_by="XM_054056582.1:74..1591"
                     /db_xref="GeneID:104062242"
ORIGIN      
        1 mrprgwflpl algllalrga asarpsfvll laddlgfgdl gcyghpssat pcldrlaarg
       61 lrftdfysss pvcspsraal ltgrfqtrsg iypgvfnpds rgglplaevt iaemlkaegy
      121 atamvgkwhl glgvngsflp thqgfdhflg vpyshdqgpc qnltcfppdi kcfgtcdqgv
      181 vpvpllwnqs ivqqpisfpd lvplynkfsr dfiadcaqrg vpfllyyash hthypqfasr
      241 eyagqtqrgp fgdalsefdg svgqvlqale engltnstlv fftsdngpst vrmarggssg
      301 llkcgkgtty eggmrepava ywpgriapgv thelastldi lptlaslaga alpkvaldgy
      361 dlspvlfgtg ksprqtmffy ppspdplhga favrlgkyka hyftqgsfhs gttpdqachg
      421 ltpltphlpp llfdlesdpa enydllqsgv gpevlqilke iqlqkvlfeq rmefgesqik
      481 kgrdpalqpc capdctpkps ccrcs
//
LOCUS       XP_053912558             636 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: kelch repeat and BTB domain-containing protein
            3 [Cuculus canorus].
ACCESSION   XP_053912558
VERSION     XP_053912558.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056583.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 8 indels
            internal stop codons :: corrected 4 genomic stop codons
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..636
                     /product="LOW QUALITY PROTEIN: kelch repeat and BTB
                     domain-containing protein 3"
                     /calculated_mol_wt=72289
     Region          25..146
                     /region_name="BTB_POZ"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain superfamily; cl38908"
                     /db_xref="CDD:453885"
     Region          39..600
                     /region_name="PHA03098"
                     /note="kelch-like protein; Provisional"
                     /db_xref="CDD:222983"
     Region          335..390
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          394..442
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          445..490
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          522..587
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..636
                     /gene="KBTBD3"
                     /coded_by="XM_054056583.1:462..2372"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons;
                     deleted 7 bases in 6 codons; substituted 4 bases at 4
                     genomic stop codons"
                     /db_xref="GeneID:104059426"
ORIGIN      
        1 manqrdyisr pvcngisvpe nkinslvaeg hgqqilkvlq kfreqniffd fkilvkdeii
       61 pchrcvlaac sdfframfev smkerddgnv tvsnlspkav ksfldtltqe kqritndnvd
      121 mlfqlssflq vsllskacsd flnknvlilx ialqllslse sygsvpliyi mhxdfateth
      181 fslllkssdf wemnfeditk mslrlmelnv peeesvlkav lqwtkhnlet rqkylpnlik
      241 kvrlhqlpek tlqdflhsee hllqsancsv iindavksvq dfsglfpdar psttekyifv
      301 hktdedgenr htfcyniktd kwkelphthm idfpgsslss ygekifitgg ckgncyrtvr
      361 lhiaepfhda tdqtwcycpv snefxivsam kkprtmhtsv vtlnqlfvig gktrgsretr
      421 slldvesynp lskdwksvsq lprgiyypea sachniiyvl gseveitdaf npsldcffky
      481 navtdqwsel vaefgqffha tlikavpvns tlyicdlsty kvysfcpetc vwkgegsfec
      541 cwlxcrgsxt edkiyilggd yapeeitdev qvyhssrsew eevspmprxl tefycqviqf
      601 nkyrtpvict gnllwrilkl lsqknpfkct sfrpdf
//
LOCUS       XP_009554743             249 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related protein Rab-39A [Cuculus canorus].
ACCESSION   XP_009554743
VERSION     XP_009554743.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556448.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554743.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..249
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..249
                     /product="ras-related protein Rab-39A"
                     /calculated_mol_wt=27964
     Region          41..249
                     /region_name="Rab39"
                     /note="Rab GTPase family 39 (Rab39); cd04111"
                     /db_xref="CDD:133311"
     Site            43..44
                     /site_type="other"
                     /note="Rab subfamily motif 1 (RabSF1)"
                     /db_xref="CDD:133311"
     Site            49..56
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:133311"
     Site            order(51..57,67,75..76,103,159..160,162,189..191)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:133311"
     Site            order(57..68,74..75)
                     /site_type="other"
                     /note="Rab subfamily motif 2 (RabSF2)"
                     /db_xref="CDD:133311"
     Site            order(67,74..82)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:133311"
     Site            order(74,78..85,93,95)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133311"
     Site            76
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:133311"
     Site            order(77,79..81,97,99,106..107,110,114,116..119,207)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:133311"
     Site            order(77..78,80,99..100,107,109,111..113)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133311"
     Site            77..81
                     /site_type="other"
                     /note="Rab family motif 1 (RabF1)"
                     /db_xref="CDD:133311"
     Site            95..99
                     /site_type="other"
                     /note="Rab family motif 2 (RabF2)"
                     /db_xref="CDD:133311"
     Site            100..103
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:133311"
     Site            order(103,105..115)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:133311"
     Site            106..111
                     /site_type="other"
                     /note="Rab family motif 3 (RabF3)"
                     /db_xref="CDD:133311"
     Site            114..118
                     /site_type="other"
                     /note="Rab family motif 4 (RabF4)"
                     /db_xref="CDD:133311"
     Site            123..128
                     /site_type="other"
                     /note="Rab family motif 5 (RabF5)"
                     /db_xref="CDD:133311"
     Site            152..156
                     /site_type="other"
                     /note="Rab subfamily motif 3 (RabSF3)"
                     /db_xref="CDD:133311"
     Site            159..162
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:133311"
     Site            189..191
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:133311"
     Site            205..207
                     /site_type="other"
                     /note="Rab subfamily motif 4 (RabSF4)"
                     /db_xref="CDD:133311"
     Site            247..249
                     /site_type="other"
                     /note="putative lipid modification site [posttranslational
                     modification]"
                     /db_xref="CDD:133311"
     CDS             1..249
                     /gene="RAB39A"
                     /coded_by="XM_009556448.2:498..1247"
                     /db_xref="GeneID:104055338"
ORIGIN      
        1 mpgvgaigar crhrprrspk kspkaepgqa gaamdaaiwi yqfrlivlgd stvgkscllh
       61 rftegrfpgp lhsdptvgvd ffsrlveiep gkrvklqlwd tagqerfrsi trsyyrnsvg
      121 gllvfditnr rsfehvkdwl eeakmhvqpf qivfllvghk cdlvsqrevt reeaeklssd
      181 cgmkyietsa kdatnveesf tiltrdiyel vkkgeitiqd gwegvksgfv pnvvhsseea
      241 vkprqqcic
//
LOCUS       XP_053912560             536 aa            linear   VRT 09-MAR-2023
DEFINITION  extracellular serine/threonine protein kinase FAM20C isoform X1
            [Cuculus canorus].
ACCESSION   XP_053912560
VERSION     XP_053912560.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056585.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..536
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..536
                     /product="extracellular serine/threonine protein kinase
                     FAM20C isoform X1"
                     /calculated_mol_wt=60628
     Region          310..528
                     /region_name="Fam20C"
                     /note="Golgi casein kinase, C-terminal, Fam20; pfam06702"
                     /db_xref="CDD:461992"
     CDS             1..536
                     /gene="LOC104065921"
                     /coded_by="XM_054056585.1:737..2347"
                     /db_xref="GeneID:104065921"
ORIGIN      
        1 mrcrlqilfq rkfkvslvil lllallvhla mdlavpaarr pcgcnekapk asgissgstd
       61 ltgpkkrslr ilqdfsgsng slekssqlqg aepqaragvl kiqhqrgdgn qewmkgskla
      121 alfkhplyni pipevtekdk lfvvnpmekf slhssgsdew vssskaetll ptgktaydty
      181 ptwlkfhvgi nryelyprqd plmptllqdl amqrivssvq ksggtqlkli mtfpdygqal
      241 fkpmkqtrdq etpadffyfs dferhnaeia afhldrildf rrippvsgrl vnitkeirdi
      301 ttdkklaktf fispagnvcf ygecsyycst ehalcgkpdr legsmatllp dktlakrhsw
      361 rspwrrsyhk skkaewelnp nycakvretp pydrghrlld lidmtvldfl mgnmdrhhye
      421 tfekfgndtf llhldngrgf gthsrdepsi laplqqccsi kkstylrlql latepyrlsd
      481 llreslatdp lapvlaephl qaldrrlgkv lavvghclar rahldevlvd dvgsqm
//
LOCUS       XP_009566748             510 aa            linear   VRT 09-MAR-2023
DEFINITION  extracellular serine/threonine protein kinase FAM20C isoform X2
            [Cuculus canorus].
ACCESSION   XP_009566748
VERSION     XP_009566748.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568453.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566748.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..510
                     /product="extracellular serine/threonine protein kinase
                     FAM20C isoform X2"
                     /calculated_mol_wt=57549
     Region          284..502
                     /region_name="Fam20C"
                     /note="Golgi casein kinase, C-terminal, Fam20; pfam06702"
                     /db_xref="CDD:461992"
     CDS             1..510
                     /gene="LOC104065921"
                     /coded_by="XM_009568453.2:69..1601"
                     /db_xref="GeneID:104065921"
ORIGIN      
        1 mhlamdlavp aarrpcgcne kapkasgiss gstdltgpkk rslrilqdfs gsngslekss
       61 qlqgaepqar agvlkiqhqr gdgnqewmkg sklaalfkhp lynipipevt ekdklfvvnp
      121 mekfslhssg sdewvssska etllptgkta ydtyptwlkf hvginryely prqdplmptl
      181 lqdlamqriv ssvqksggtq lklimtfpdy gqalfkpmkq trdqetpadf fyfsdferhn
      241 aeiaafhldr ildfrrippv sgrlvnitke irdittdkkl aktffispag nvcfygecsy
      301 ycstehalcg kpdrlegsma tllpdktlak rhswrspwrr syhkskkaew elnpnycakv
      361 retppydrgh rlldlidmtv ldflmgnmdr hhyetfekfg ndtfllhldn grgfgthsrd
      421 epsilaplqq ccsikkstyl rlqllatepy rlsdllresl atdplapvla ephlqaldrr
      481 lgkvlavvgh clarrahlde vlvddvgsqm
//
LOCUS       XP_053912561             106 aa            linear   VRT 09-MAR-2023
DEFINITION  dynein axonemal light chain 4 [Cuculus canorus].
ACCESSION   XP_053912561
VERSION     XP_053912561.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056586.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..106
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..106
                     /product="dynein axonemal light chain 4"
                     /calculated_mol_wt=11959
     Region          22..104
                     /region_name="DLC-like_DNAL4"
                     /note="dynein light chain (DLC)-like domain found in
                     axonemal dynein light chain 4 (DNAL4) and similar
                     proteins; cd21453"
                     /db_xref="CDD:412001"
     CDS             1..106
                     /gene="DNAL4"
                     /coded_by="XM_054056586.1:249..569"
                     /db_xref="GeneID:104065894"
ORIGIN      
        1 madtgegkke eadykrlhnf plirhtdmpe emrveamelc vtacekyttn nesaakmike
       61 mmdkkfgssw hvvigesfgl evthevksll ymffggslav cvwkcs
//
LOCUS       XP_053912562             106 aa            linear   VRT 09-MAR-2023
DEFINITION  dynein axonemal light chain 4 [Cuculus canorus].
ACCESSION   XP_053912562
VERSION     XP_053912562.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056587.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..106
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..106
                     /product="dynein axonemal light chain 4"
                     /calculated_mol_wt=11959
     Region          22..104
                     /region_name="DLC-like_DNAL4"
                     /note="dynein light chain (DLC)-like domain found in
                     axonemal dynein light chain 4 (DNAL4) and similar
                     proteins; cd21453"
                     /db_xref="CDD:412001"
     CDS             1..106
                     /gene="DNAL4"
                     /coded_by="XM_054056587.1:203..523"
                     /db_xref="GeneID:104065894"
ORIGIN      
        1 madtgegkke eadykrlhnf plirhtdmpe emrveamelc vtacekyttn nesaakmike
       61 mmdkkfgssw hvvigesfgl evthevksll ymffggslav cvwkcs
//
LOCUS       XP_009558841             633 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier family 13 member 4 [Cuculus canorus].
ACCESSION   XP_009558841
VERSION     XP_009558841.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560546.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..633
                     /product="solute carrier family 13 member 4"
                     /calculated_mol_wt=70029
     Region          90..610
                     /region_name="CitT"
                     /note="Di- and tricarboxylate antiporter [Carbohydrate
                     transport and metabolism]; COG0471"
                     /db_xref="CDD:440239"
     CDS             1..633
                     /gene="SLC13A4"
                     /coded_by="XM_009560546.2:824..2725"
                     /db_xref="GeneID:104058955"
ORIGIN      
        1 mammkeilps rnlllvvlip llllplplly ssseascayv livtavywvs eavplgaaal
       61 vpaflyplfg vmkssevaae yfknttlllm gvicvaasve kwnlhkrial rmvmmagakp
      121 gmlllcfmcc ttllsmwlsn tsttamvmpi veavlqelvn aeeehevist agstiieene
      181 aiglsekhgq pslelifine nttttdfssl mqsksmngvh miaspigtmn skssgqhlpq
      241 aqilvlppkp sepglstkyr yqtrhdhmvc kclslsisya atigglttii gtstslifle
      301 hfnnhypdae vvnfgtwflf sfpislimlv ltwfwmhwlf lgcnfketcs vskkkktkre
      361 emserriqee ykklgnvsyp emvtgfffil mtllwftrep gfvpgwssff ekkgyrtdat
      421 vsvflgfllf lipakkpcfg rrekgdgeks tdintldpii twkdfqktmp weivvlvggg
      481 yalaagckts glstwigrqm lslsslpcwa vtllacilvs lvtefvsnpa titiflpilc
      541 smsetllinp lytlipvtmc isfavmlpvg nppnaivfsy ghcqikdmvk aglgvnligl
      601 avvmvaintw girlfqlnsf pewatvsnit rqt
//
LOCUS       XP_053912563             633 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier family 13 member 4 [Cuculus canorus].
ACCESSION   XP_053912563
VERSION     XP_053912563.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056588.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..633
                     /product="solute carrier family 13 member 4"
                     /calculated_mol_wt=70029
     Region          90..610
                     /region_name="CitT"
                     /note="Di- and tricarboxylate antiporter [Carbohydrate
                     transport and metabolism]; COG0471"
                     /db_xref="CDD:440239"
     CDS             1..633
                     /gene="SLC13A4"
                     /coded_by="XM_054056588.1:732..2633"
                     /db_xref="GeneID:104058955"
ORIGIN      
        1 mammkeilps rnlllvvlip llllplplly ssseascayv livtavywvs eavplgaaal
       61 vpaflyplfg vmkssevaae yfknttlllm gvicvaasve kwnlhkrial rmvmmagakp
      121 gmlllcfmcc ttllsmwlsn tsttamvmpi veavlqelvn aeeehevist agstiieene
      181 aiglsekhgq pslelifine nttttdfssl mqsksmngvh miaspigtmn skssgqhlpq
      241 aqilvlppkp sepglstkyr yqtrhdhmvc kclslsisya atigglttii gtstslifle
      301 hfnnhypdae vvnfgtwflf sfpislimlv ltwfwmhwlf lgcnfketcs vskkkktkre
      361 emserriqee ykklgnvsyp emvtgfffil mtllwftrep gfvpgwssff ekkgyrtdat
      421 vsvflgfllf lipakkpcfg rrekgdgeks tdintldpii twkdfqktmp weivvlvggg
      481 yalaagckts glstwigrqm lslsslpcwa vtllacilvs lvtefvsnpa titiflpilc
      541 smsetllinp lytlipvtmc isfavmlpvg nppnaivfsy ghcqikdmvk aglgvnligl
      601 avvmvaintw girlfqlnsf pewatvsnit rqt
//
LOCUS       XP_053912565            1769 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase listerin [Cuculus canorus].
ACCESSION   XP_053912565
VERSION     XP_053912565.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056590.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1769
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1769
                     /product="E3 ubiquitin-protein ligase listerin"
                     /calculated_mol_wt=199555
     Region          59..>262
                     /region_name="COG5219"
                     /note="Uncharacterized conserved protein, contains RING
                     Zn-finger [General function prediction only]"
                     /db_xref="CDD:227544"
     Region          <1480..1769
                     /region_name="COG5219"
                     /note="Uncharacterized conserved protein, contains RING
                     Zn-finger [General function prediction only]"
                     /db_xref="CDD:227544"
     CDS             1..1769
                     /gene="LTN1"
                     /coded_by="XM_054056590.1:94..5403"
                     /db_xref="GeneID:104064777"
ORIGIN      
        1 mggknkqrtk gnlrpsssgr aaelltkesg tvpgfigfgt sqsdlgyvpa vqgaeeidsl
       61 vdadfrmvlr klskrdittk lkamqefgtm ckereaevvk gvlpywpriy ckisldhdrr
      121 vreatqqsfe qlilkvkkhl apylksimgy wliaqcdtys paasaakvaf ekafpsskqp
      181 ealvfckdei lnvlhdhllk etpdtfsdpq tvpedereak ffriltcsll alkkflsmlp
      241 nkemhsleek lmsllsqnkf wkyskhnmpq vrsaffelts tfcqyvpelv kaeaarvcpa
      301 lllsiddsda vvcpalweav lhavatiedc wshvsakkgv lpklwtvlre ggrglatviy
      361 pnlllfiskv ppgtaepkle yfrtffssmi qglsseraia sssessaiit afmeclrfav
      421 lqkvdeddqr rihqmliceq lipltdavlk eprfqngplf yqiaemlssw eakaelsndd
      481 gthevfqkll snfwdhlfkm cvlhvdtlsa dekslfaisd mleilqnpkn atkpnnkkcl
      541 kirftdedgs erntengklt emrtsdseiq tdlqhssllr keplenlvcs laelsivyvn
      601 eqksekhlkf lsallnsfss nrvfqvlleq gndlsssqae srkeikfche spsvqflyvn
      661 litwlkedwr kdtnflvdil ysvlnccnsn derkiilddl tkmdlkwiif lqiiqkacss
      721 atklslvsdw lkgdtlgerl vmladdlchl slepiatssa lssserwtll slvlsqhikn
      781 esligesfve rildklqasl skakdlseag ntepsvsfic dvassffssi kgcllmpsse
      841 dllltifqlc aqrqdtthlt dllvcklkht wisgvnslvr qlqsmqkqst flrksalwvk
      901 nqiqsssldv kslqvlvsav sellselmea dgepghlvga yveqvtpnkt eweklhesls
      961 tewmhkplle grlsmncepl gscvklcgtt klpghlctsa llskmvllvl engivyangd
     1021 aerkkidnii vellyslqwi eelenppyll leylhmlqem nityekfsal cstaslqqti
     1081 farseehgrl wsltmakvir aektvscemk qlfkttegfl pltegrlhtl qclspfltee
     1141 ekkelvfhcv aklmtctqte lsstdgafgc lsilnsclnd rsidcddllp gilkiiiswk
     1201 nnnedsflfs cnlketnaql lgfniemiry lplllkysta plddkewdfi mcsmlawlet
     1261 tsenssfyhv plvqifacvs cdlasalssy felaapette slpvnlisew keffsegihn
     1321 lllpllvkit getknasegf fknsvltslg kalayiskdq llnhklpakf vagqktnlpd
     1381 klqtllntls plllfrarpv qiavyhmlyk lmpelpkfdd edlksygdee eesalsppaa
     1441 lmsvlateel llenilecip vgefaviqpl sdefclvlgy lltwkltlaf fkaassqlrv
     1501 lysqylrrtk slnkllyhlf rlmpenpvls gptsevpnkd tktffteelh ldvkgtgvls
     1561 sqiphlacsv yhvtlkdlpa mvrlwwnsce krifnvvdkf tskyvssvls sqeissvqss
     1621 tqlfngmtvk arsaarevia tysvddifie liiqlpsnyp lgsitvesgk rvgvavqqwr
     1681 nwmlqlstyl thqngsimeg lslwknnvdk hfegvedcmi cfsvihgsny slpkkacrtc
     1741 kkkfhsacly kwftsstkst cplcreiff
//
LOCUS       XP_053912566             816 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912566
VERSION     XP_053912566.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056591.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..816
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..816
                     /product="ubiquitin carboxyl-terminal hydrolase 16 isoform
                     X1"
                     /calculated_mol_wt=93050
     Region          47..113
                     /region_name="zf-UBP"
                     /note="Zn-finger in ubiquitin-hydrolases and other
                     protein; cl09957"
                     /db_xref="CDD:471956"
     Region          82..814
                     /region_name="UBP12"
                     /note="Ubiquitin C-terminal hydrolase [Posttranslational
                     modification, protein turnover, chaperones]; COG5560"
                     /db_xref="CDD:227847"
     Region          194..>378
                     /region_name="Peptidase_C19"
                     /note="Peptidase C19 contains ubiquitinyl hydrolases. They
                     are intracellular peptidases that remove ubiquitin
                     molecules from polyubiquinated peptides by cleavage of
                     isopeptide bonds. They hydrolyse bonds involving the
                     carboxyl group of the C-terminal Gly...; cl02553"
                     /db_xref="CDD:470612"
     Region          <616..813
                     /region_name="Peptidase_C19K"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02667"
                     /db_xref="CDD:239132"
     CDS             1..816
                     /gene="USP16"
                     /coded_by="XM_054056591.1:195..2645"
                     /db_xref="GeneID:104064774"
ORIGIN      
        1 mgkkrikgkt vqsesldtle pmckhirkgl eqshlkkall nvewhvcqdc kvdnktqeks
       61 eeetdespsi wlclkcghrg cgrnspeqha lkhfttprsd phclvlsldn wsvwcyicdd
      121 evpyttstrl gqtvdyirkq vctasshtve kqqenkefen kkvekdskne qekevslkee
      181 nspsstnlev tvkglsnlgn tcffnavmqn lsqtpvlrel lkeakmpgmt vkiespelfm
      241 epqlikldlp gpltlamyqf ltemqetnkr vvtpkelfaq vckkairfkg yqqqdshell
      301 rylldgmrae eiqqisvgil kaltdsneqn eeeikkkike yekkkgiqsf vdrifggelt
      361 stimceecrt vslvhesfld lslpllddqk vkftnernvk knkekeseed knndcylkqn
      421 ddppgtskhl qkkakkqakk qaksqrrqqk lqgkvlhltd icateesekd leynqeseae
      481 mnsetpdtkq eeessndskd cclsqkdlsv qgnsievqsm henigeteqe cvekedvidl
      541 pvegldspik vvngldslsv kdedeeelaa dfsklrlnan aesvkstldd lqsipfktce
      601 vstedpeiaf ctlanredln peegsihhcl yqftrneklt esnkllcdvc tqrhygpknn
      661 iksenkyvyt nakkqmlisl appvltlhlk rfqqagfnlr kvnrhikfpe vidlapfcta
      721 kckniaegdt kvlyslygvv ehsgtmrsgh ytayakmrsm nnhlsdlvlr gqfpqalete
      781 pvkgqwfhis dtyvqavpas kvlssqayll fyerll
//
LOCUS       XP_053912567             816 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912567
VERSION     XP_053912567.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056592.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..816
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..816
                     /product="ubiquitin carboxyl-terminal hydrolase 16 isoform
                     X1"
                     /calculated_mol_wt=93050
     Region          47..113
                     /region_name="zf-UBP"
                     /note="Zn-finger in ubiquitin-hydrolases and other
                     protein; cl09957"
                     /db_xref="CDD:471956"
     Region          82..814
                     /region_name="UBP12"
                     /note="Ubiquitin C-terminal hydrolase [Posttranslational
                     modification, protein turnover, chaperones]; COG5560"
                     /db_xref="CDD:227847"
     Region          194..>378
                     /region_name="Peptidase_C19"
                     /note="Peptidase C19 contains ubiquitinyl hydrolases. They
                     are intracellular peptidases that remove ubiquitin
                     molecules from polyubiquinated peptides by cleavage of
                     isopeptide bonds. They hydrolyse bonds involving the
                     carboxyl group of the C-terminal Gly...; cl02553"
                     /db_xref="CDD:470612"
     Region          <616..813
                     /region_name="Peptidase_C19K"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02667"
                     /db_xref="CDD:239132"
     CDS             1..816
                     /gene="USP16"
                     /coded_by="XM_054056592.1:139..2589"
                     /db_xref="GeneID:104064774"
ORIGIN      
        1 mgkkrikgkt vqsesldtle pmckhirkgl eqshlkkall nvewhvcqdc kvdnktqeks
       61 eeetdespsi wlclkcghrg cgrnspeqha lkhfttprsd phclvlsldn wsvwcyicdd
      121 evpyttstrl gqtvdyirkq vctasshtve kqqenkefen kkvekdskne qekevslkee
      181 nspsstnlev tvkglsnlgn tcffnavmqn lsqtpvlrel lkeakmpgmt vkiespelfm
      241 epqlikldlp gpltlamyqf ltemqetnkr vvtpkelfaq vckkairfkg yqqqdshell
      301 rylldgmrae eiqqisvgil kaltdsneqn eeeikkkike yekkkgiqsf vdrifggelt
      361 stimceecrt vslvhesfld lslpllddqk vkftnernvk knkekeseed knndcylkqn
      421 ddppgtskhl qkkakkqakk qaksqrrqqk lqgkvlhltd icateesekd leynqeseae
      481 mnsetpdtkq eeessndskd cclsqkdlsv qgnsievqsm henigeteqe cvekedvidl
      541 pvegldspik vvngldslsv kdedeeelaa dfsklrlnan aesvkstldd lqsipfktce
      601 vstedpeiaf ctlanredln peegsihhcl yqftrneklt esnkllcdvc tqrhygpknn
      661 iksenkyvyt nakkqmlisl appvltlhlk rfqqagfnlr kvnrhikfpe vidlapfcta
      721 kckniaegdt kvlyslygvv ehsgtmrsgh ytayakmrsm nnhlsdlvlr gqfpqalete
      781 pvkgqwfhis dtyvqavpas kvlssqayll fyerll
//
LOCUS       XP_053912568             795 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 16 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912568
VERSION     XP_053912568.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056593.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..795
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..795
                     /product="ubiquitin carboxyl-terminal hydrolase 16 isoform
                     X2"
                     /calculated_mol_wt=90722
     Region          26..92
                     /region_name="zf-UBP"
                     /note="Zn-finger in ubiquitin-hydrolases and other
                     protein; cl09957"
                     /db_xref="CDD:471956"
     Region          61..793
                     /region_name="UBP12"
                     /note="Ubiquitin C-terminal hydrolase [Posttranslational
                     modification, protein turnover, chaperones]; COG5560"
                     /db_xref="CDD:227847"
     Region          173..>357
                     /region_name="Peptidase_C19"
                     /note="Peptidase C19 contains ubiquitinyl hydrolases. They
                     are intracellular peptidases that remove ubiquitin
                     molecules from polyubiquinated peptides by cleavage of
                     isopeptide bonds. They hydrolyse bonds involving the
                     carboxyl group of the C-terminal Gly...; cl02553"
                     /db_xref="CDD:470612"
     Region          <595..792
                     /region_name="Peptidase_C19K"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02667"
                     /db_xref="CDD:239132"
     CDS             1..795
                     /gene="USP16"
                     /coded_by="XM_054056593.1:138..2525"
                     /db_xref="GeneID:104064774"
ORIGIN      
        1 mckhirkgle qshlkkalln vewhvcqdck vdnktqekse eetdespsiw lclkcghrgc
       61 grnspeqhal khfttprsdp hclvlsldnw svwcyicdde vpyttstrlg qtvdyirkqv
      121 ctasshtvek qqenkefenk kvekdskneq ekevslkeen spsstnlevt vkglsnlgnt
      181 cffnavmqnl sqtpvlrell keakmpgmtv kiespelfme pqlikldlpg pltlamyqfl
      241 temqetnkrv vtpkelfaqv ckkairfkgy qqqdshellr ylldgmraee iqqisvgilk
      301 altdsneqne eeikkkikey ekkkgiqsfv drifggelts timceecrtv slvhesfldl
      361 slpllddqkv kftnernvkk nkekeseedk nndcylkqnd dppgtskhlq kkakkqakkq
      421 aksqrrqqkl qgkvlhltdi cateesekdl eynqeseaem nsetpdtkqe eessndskdc
      481 clsqkdlsvq gnsievqsmh enigeteqec vekedvidlp vegldspikv vngldslsvk
      541 dedeeelaad fsklrlnana esvkstlddl qsipfktcev stedpeiafc tlanredlnp
      601 eegsihhcly qftrneklte snkllcdvct qrhygpknni ksenkyvytn akkqmlisla
      661 ppvltlhlkr fqqagfnlrk vnrhikfpev idlapfctak ckniaegdtk vlyslygvve
      721 hsgtmrsghy tayakmrsmn nhlsdlvlrg qfpqaletep vkgqwfhisd tyvqavpask
      781 vlssqayllf yerll
//
LOCUS       XP_053912569             292 aa            linear   VRT 09-MAR-2023
DEFINITION  RWD domain-containing protein 2B isoform X1 [Cuculus canorus].
ACCESSION   XP_053912569
VERSION     XP_053912569.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056594.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..292
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..292
                     /product="RWD domain-containing protein 2B isoform X1"
                     /calculated_mol_wt=33297
     Region          7..137
                     /region_name="RWD_RWDD2"
                     /note="RWD domain of RWD domain-containing protein 2A
                     (RWDD2A), 2B (RWDD2B) and related proteins; cd23829"
                     /db_xref="CDD:467663"
     Region          159..288
                     /region_name="RWDD2_C"
                     /note="C-terminal domain of RWD domain-containing protein
                     2; cd24163"
                     /db_xref="CDD:467814"
     CDS             1..292
                     /gene="RWDD2B"
                     /coded_by="XM_054056594.1:142..1020"
                     /db_xref="GeneID:104064775"
ORIGIN      
        1 mtnkeeaeiq vseldllssm fpyeeefivt dqlavaelkh yvenesaemp sskvqfilnv
       61 kpevsnasmv efsmacalpf kyptvlpeit vrssllsrsq qihlnsdlkt ylmqncsgep
      121 cmlsarewvk ehaaayidke lssssvttsn alrseditft rlwiyshhiy nkqkrkniie
      181 wakelslsgf cmpgkpgvvc veglqsscee fwsrvrrltw krilirhred vslegggdae
      241 iqkqrkfstl eekcfdahga rgnhmdlgql yhfleekgca difqmyfgve gq
//
LOCUS       XP_053912570             264 aa            linear   VRT 09-MAR-2023
DEFINITION  RWD domain-containing protein 2B isoform X2 [Cuculus canorus].
ACCESSION   XP_053912570
VERSION     XP_053912570.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056595.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..264
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..264
                     /product="RWD domain-containing protein 2B isoform X2"
                     /calculated_mol_wt=30220
     Region          7..117
                     /region_name="RWD_RWDD2"
                     /note="RWD domain of RWD domain-containing protein 2A
                     (RWDD2A), 2B (RWDD2B) and related proteins; cd23829"
                     /db_xref="CDD:467663"
     Region          131..260
                     /region_name="RWDD2_C"
                     /note="C-terminal domain of RWD domain-containing protein
                     2; cd24163"
                     /db_xref="CDD:467814"
     CDS             1..264
                     /gene="RWDD2B"
                     /coded_by="XM_054056595.1:92..886"
                     /db_xref="GeneID:104064775"
ORIGIN      
        1 mtnkeeaeiq vseldllssm fpyeeefivt dqlavaelkh yvenesaemp sskvqfilnv
       61 kpevsnasmv efsmacalpf kyptvlpeit vrssllsrsq qihlnsdlkt ylmqncsvtt
      121 snalrsedit ftrlwiyshh iynkqkrkni iewakelsls gfcmpgkpgv vcveglqssc
      181 eefwsrvrrl twkrilirhr edvslegggd aeiqkqrkfs tleekcfdah gargnhmdlg
      241 qlyhfleekg cadifqmyfg vegq
//
LOCUS       XP_053912571             292 aa            linear   VRT 09-MAR-2023
DEFINITION  RWD domain-containing protein 2B isoform X1 [Cuculus canorus].
ACCESSION   XP_053912571
VERSION     XP_053912571.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056596.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..292
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..292
                     /product="RWD domain-containing protein 2B isoform X1"
                     /calculated_mol_wt=33297
     Region          7..137
                     /region_name="RWD_RWDD2"
                     /note="RWD domain of RWD domain-containing protein 2A
                     (RWDD2A), 2B (RWDD2B) and related proteins; cd23829"
                     /db_xref="CDD:467663"
     Region          159..288
                     /region_name="RWDD2_C"
                     /note="C-terminal domain of RWD domain-containing protein
                     2; cd24163"
                     /db_xref="CDD:467814"
     CDS             1..292
                     /gene="RWDD2B"
                     /coded_by="XM_054056596.1:116..994"
                     /db_xref="GeneID:104064775"
ORIGIN      
        1 mtnkeeaeiq vseldllssm fpyeeefivt dqlavaelkh yvenesaemp sskvqfilnv
       61 kpevsnasmv efsmacalpf kyptvlpeit vrssllsrsq qihlnsdlkt ylmqncsgep
      121 cmlsarewvk ehaaayidke lssssvttsn alrseditft rlwiyshhiy nkqkrkniie
      181 wakelslsgf cmpgkpgvvc veglqsscee fwsrvrrltw krilirhred vslegggdae
      241 iqkqrkfstl eekcfdahga rgnhmdlgql yhfleekgca difqmyfgve gq
//
LOCUS       XP_009565471             218 aa            linear   VRT 09-MAR-2023
DEFINITION  methyltransferase N6AMT1 [Cuculus canorus].
ACCESSION   XP_009565471
VERSION     XP_009565471.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009567176.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009565471.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..218
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..218
                     /product="methyltransferase N6AMT1"
                     /calculated_mol_wt=23523
     Region          22..217
                     /region_name="AdoMet_MTases"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); cl17173"
                     /db_xref="CDD:473071"
     Site            order(55..61,81..82,106..108,126)
                     /site_type="other"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]"
                     /db_xref="CDD:100107"
     CDS             1..218
                     /gene="N6AMT1"
                     /coded_by="XM_009567176.2:109..765"
                     /db_xref="GeneID:104064798"
ORIGIN      
        1 mavpplptpr fehvgpqgpf revyepaedt fllldaleqd aaglrearve icleigsgsg
       61 vvstflassi igasalyict dinpmaayct qetallnnvh lqpvitdlvk glsprlngkv
      121 dlllfnppyv vtsseevgsh gieaswaggk kgrevmdrvf plvpdllspg glfylvtike
      181 nnpdeiletm kkcglegtrv lsrqagqeml tilkfrks
//
LOCUS       XP_053912572             747 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphate-regulating neutral endopeptidase PHEX [Cuculus canorus].
ACCESSION   XP_053912572
VERSION     XP_053912572.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056597.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..747
                     /product="phosphate-regulating neutral endopeptidase PHEX"
                     /calculated_mol_wt=86692
     Region          72..738
                     /region_name="M13"
                     /note="Peptidase family M13 includes neprilysin and
                     endothelin-converting enzyme I; cd08662"
                     /db_xref="CDD:341056"
     Site            order(102,530,535..538,557,574..575,578..579,582,640,686,
                     689..690,707..708,714)
                     /site_type="active"
                     /db_xref="CDD:341056"
     CDS             1..747
                     /gene="PHEX"
                     /coded_by="XM_054056597.1:1918..4161"
                     /db_xref="GeneID:104063405"
ORIGIN      
        1 megevvpear raaskatria lgifvsgtvv lgtmlflvsq glikfrpkqq ycltseciea
       61 aaailskinq svdpcenfyr facdgwiynh pipedmsnyg vypwlrhnvd lklkallekp
      121 iskrrdseav qkakilyasc mnenkiekad vkpllsilrh spfrwpvles nigpeglwse
      181 rrfslvqala tlrgqysnsv firlyvaadd kisnqyilkl dqaglslasr edylenttea
      241 ksyrdaflqf mvdtavllga nasraesdmk svlrleikia eimipyenrt sevmynkmni
      301 selsamipqf dwlgyikkvi dtrvypelkd igpsenvivr vpqyfkdlfr ilenerkktl
      361 anyvvwrmvy srifnlsrrf qyrwlefsrv ihgtttllpq wdkcvdlves alpyvvgkmf
      421 vkahfqedkk emmeeltegi rwafidmlek endwmdsetk rkaydkakav makvgypqfi
      481 mndtyinedi ktlkftendy fgnvlqtrky aaqsdfywlr kevpktewft spttvnafys
      541 astnqirfpa gelqkpffwg teyprslsyg aigvivghef thgfdsngrk ydkngnldpw
      601 wtndseekfk ektkcminqy nnyywkragl hvkgkrtlae niadngglre afrayrrwit
      661 ekrggeeepl lpglefthnq lfflsyahvr cnsfrpesar eqiyvgahsp pqfrvigams
      721 nfeefrkafn cptnttmnrg sescrlw
//
LOCUS       XP_009554703             568 aa            linear   VRT 09-MAR-2023
DEFINITION  hyaluronidase PH-20 [Cuculus canorus].
ACCESSION   XP_009554703
VERSION     XP_009554703.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556408.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554703.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..568
                     /product="hyaluronidase PH-20"
                     /calculated_mol_wt=64669
     Region          43..378
                     /region_name="Glyco_hydro_56"
                     /note="Hyaluronidase; pfam01630"
                     /db_xref="CDD:460272"
     CDS             1..568
                     /gene="LOC104055298"
                     /coded_by="XM_009556408.2:305..2011"
                     /db_xref="GeneID:104055298"
ORIGIN      
        1 mgtlrqirsf gicvtctypv stgmvfatll vsccaslkir asplvhnspf lsiwnaptel
       61 ctertgvqld mkffsfigst lktsiaqnit lfypdrlgyy pyknevtgea fngglpqlsp
      121 ldnhlkkake diqfyipsde qfglaiidwe nwrpvwirnw gskdiyrqes ielvqqrdls
      181 lseaeartia ktefedaaks imleslklgi emrpnrlwgy ylypdcynyd ykqnphnytg
      241 tcldieiern nelnwlweqs talypsvyle talrssrnap lfvrnrvqea irisyvsnss
      301 yplpvfvytr pvftdayeey lsqddlvnti gesaalgasg iviwgdmnlt qskntcrtld
      361 nylrrtltpy linvtmaaki csqvlcqdsg acvrkkwnss dylhlnpeni viqmtkdgky
      421 tlqgqpafqd lqtfiekfdc hcyaehscep radindihyl hacisedici qissnsvsni
      481 etseekilsn gtvfsftsqs kvtlsarper dfqstlgkni ttaeykngia atrydletny
      541 thtlsssssy kirvinlfcl ilnlrtli
//
LOCUS       XP_053912573             568 aa            linear   VRT 09-MAR-2023
DEFINITION  hyaluronidase PH-20 [Cuculus canorus].
ACCESSION   XP_053912573
VERSION     XP_053912573.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056598.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..568
                     /product="hyaluronidase PH-20"
                     /calculated_mol_wt=64669
     Region          43..378
                     /region_name="Glyco_hydro_56"
                     /note="Hyaluronidase; pfam01630"
                     /db_xref="CDD:460272"
     CDS             1..568
                     /gene="LOC104055298"
                     /coded_by="XM_054056598.1:1496..3202"
                     /db_xref="GeneID:104055298"
ORIGIN      
        1 mgtlrqirsf gicvtctypv stgmvfatll vsccaslkir asplvhnspf lsiwnaptel
       61 ctertgvqld mkffsfigst lktsiaqnit lfypdrlgyy pyknevtgea fngglpqlsp
      121 ldnhlkkake diqfyipsde qfglaiidwe nwrpvwirnw gskdiyrqes ielvqqrdls
      181 lseaeartia ktefedaaks imleslklgi emrpnrlwgy ylypdcynyd ykqnphnytg
      241 tcldieiern nelnwlweqs talypsvyle talrssrnap lfvrnrvqea irisyvsnss
      301 yplpvfvytr pvftdayeey lsqddlvnti gesaalgasg iviwgdmnlt qskntcrtld
      361 nylrrtltpy linvtmaaki csqvlcqdsg acvrkkwnss dylhlnpeni viqmtkdgky
      421 tlqgqpafqd lqtfiekfdc hcyaehscep radindihyl hacisedici qissnsvsni
      481 etseekilsn gtvfsftsqs kvtlsarper dfqstlgkni ttaeykngia atrydletny
      541 thtlsssssy kirvinlfcl ilnlrtli
//
LOCUS       XP_053912574             568 aa            linear   VRT 09-MAR-2023
DEFINITION  hyaluronidase PH-20 [Cuculus canorus].
ACCESSION   XP_053912574
VERSION     XP_053912574.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056599.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..568
                     /product="hyaluronidase PH-20"
                     /calculated_mol_wt=64669
     Region          43..378
                     /region_name="Glyco_hydro_56"
                     /note="Hyaluronidase; pfam01630"
                     /db_xref="CDD:460272"
     CDS             1..568
                     /gene="LOC104055298"
                     /coded_by="XM_054056599.1:246..1952"
                     /db_xref="GeneID:104055298"
ORIGIN      
        1 mgtlrqirsf gicvtctypv stgmvfatll vsccaslkir asplvhnspf lsiwnaptel
       61 ctertgvqld mkffsfigst lktsiaqnit lfypdrlgyy pyknevtgea fngglpqlsp
      121 ldnhlkkake diqfyipsde qfglaiidwe nwrpvwirnw gskdiyrqes ielvqqrdls
      181 lseaeartia ktefedaaks imleslklgi emrpnrlwgy ylypdcynyd ykqnphnytg
      241 tcldieiern nelnwlweqs talypsvyle talrssrnap lfvrnrvqea irisyvsnss
      301 yplpvfvytr pvftdayeey lsqddlvnti gesaalgasg iviwgdmnlt qskntcrtld
      361 nylrrtltpy linvtmaaki csqvlcqdsg acvrkkwnss dylhlnpeni viqmtkdgky
      421 tlqgqpafqd lqtfiekfdc hcyaehscep radindihyl hacisedici qissnsvsni
      481 etseekilsn gtvfsftsqs kvtlsarper dfqstlgkni ttaeykngia atrydletny
      541 thtlsssssy kirvinlfcl ilnlrtli
//
LOCUS       XP_009554329             225 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamine amidotransferase-like class 1 domain-containing protein
            3, mitochondrial [Cuculus canorus].
ACCESSION   XP_009554329
VERSION     XP_009554329.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556034.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..225
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..225
                     /product="glutamine amidotransferase-like class 1
                     domain-containing protein 3, mitochondrial"
                     /calculated_mol_wt=23768
     Region          5..225
                     /region_name="GATase1_ES1"
                     /note="Type 1 glutamine amidotransferase (GATase1)-like
                     domain found in zebrafish ES1; cd03133"
                     /db_xref="CDD:153227"
     Site            136
                     /site_type="active"
                     /note="conserved cys residue [active]"
                     /db_xref="CDD:153227"
     CDS             1..225
                     /gene="LOC104054959"
                     /coded_by="XM_009556034.2:65..742"
                     /db_xref="GeneID:104054959"
ORIGIN      
        1 mgkrvavvla gcgvfdgsev heasaalvhl srggaevkif apnieqrdvv nhlkgspaee
       61 krnvlvesar largniqdla elkasefdav ifpggfgvak nlcswavdgk nctvnehvhs
      121 tlqafhsakk piglccispv laakvfpgce vtvgqdknvd grfpdaetas aivelgckhv
      181 cknvneshvd kankivttca fmckaplhei fegvgtmvqe vlkla
//
LOCUS       XP_053912576             266 aa            linear   VRT 09-MAR-2023
DEFINITION  GTP-binding protein 8 [Cuculus canorus].
ACCESSION   XP_053912576
VERSION     XP_053912576.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056601.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..266
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..266
                     /product="GTP-binding protein 8"
                     /calculated_mol_wt=29273
     Region          67..254
                     /region_name="EngB"
                     /note="GTP-binding protein EngB required for normal cell
                     division [Cell cycle control, cell division, chromosome
                     partitioning]; COG0218"
                     /db_xref="CDD:439988"
     CDS             1..266
                     /gene="GTPBP8"
                     /coded_by="XM_054056601.1:42..842"
                     /db_xref="GeneID:104055789"
ORIGIN      
        1 mllragsppa lsslrvalrs grrgavfple qlerclapga eaariglfrp glealqraea
       61 lfragpahri aylssavrmd happaalpev cfigrsnvgk ssliralfsl apevevrvsk
      121 tpghtkkmnf fkvgkyftlv dmpgygyrap qdfvemveay lqerrnlkrt fllvdgvvgl
      181 qktdyigiem leefgipyvm vltkidrask glllknvlei qefvnkktqg cfpqlflvss
      241 lefsgvhllr cfiahvtgnl pvveas
//
LOCUS       XP_053912577             266 aa            linear   VRT 09-MAR-2023
DEFINITION  GTP-binding protein 8 [Cuculus canorus].
ACCESSION   XP_053912577
VERSION     XP_053912577.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056602.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..266
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..266
                     /product="GTP-binding protein 8"
                     /calculated_mol_wt=29273
     Region          67..254
                     /region_name="EngB"
                     /note="GTP-binding protein EngB required for normal cell
                     division [Cell cycle control, cell division, chromosome
                     partitioning]; COG0218"
                     /db_xref="CDD:439988"
     CDS             1..266
                     /gene="GTPBP8"
                     /coded_by="XM_054056602.1:42..842"
                     /db_xref="GeneID:104055789"
ORIGIN      
        1 mllragsppa lsslrvalrs grrgavfple qlerclapga eaariglfrp glealqraea
       61 lfragpahri aylssavrmd happaalpev cfigrsnvgk ssliralfsl apevevrvsk
      121 tpghtkkmnf fkvgkyftlv dmpgygyrap qdfvemveay lqerrnlkrt fllvdgvvgl
      181 qktdyigiem leefgipyvm vltkidrask glllknvlei qefvnkktqg cfpqlflvss
      241 lefsgvhllr cfiahvtgnl pvveas
//
LOCUS       XP_053912578             227 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: gamma-parvin [Cuculus canorus].
ACCESSION   XP_053912578
VERSION     XP_053912578.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056603.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 2 indels
            internal stop codons :: corrected 1 genomic stop codons
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..227
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..227
                     /product="LOW QUALITY PROTEIN: gamma-parvin"
                     /calculated_mol_wt=25423
     Region          45..150
                     /region_name="CH_SF"
                     /note="calponin homology (CH) domain superfamily; cl00030"
                     /db_xref="CDD:469584"
     Site            order(50,101,103..104,107..108,110,126..130,135,137..138,
                     140..141,144..145,148)
                     /site_type="other"
                     /note="actin binding site [polypeptide binding]"
                     /db_xref="CDD:409031"
     Region          <160..223
                     /region_name="CH_SF"
                     /note="calponin homology (CH) domain superfamily; cl00030"
                     /db_xref="CDD:469584"
     CDS             1..227
                     /gene="LOC104067366"
                     /coded_by="XM_054056603.1:244..927"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon;
                     deleted 2 bases in 1 codon; substituted 1 base at 1
                     genomic stop codon"
                     /db_xref="GeneID:104067366"
ORIGIN      
        1 mdpdflnvft qpaalnqfld eivvgqgkkk klikltsinn pkleelklls idwikttlke
       61 vhivvkslee dlxnglvlnh llekleslkl dldkialtek nqqxklsvil eavvkclqle
      121 esqlkwrnvp iltkdllstl hllgaiakhf tpnlamlpnv qvetiaiefa dgvillllig
      181 qlegyflnlr nflltqassm emilngdmkt tmqilyclys kyktket
//
LOCUS       XP_053912579             254 aa            linear   VRT 09-MAR-2023
DEFINITION  killer cell lectin-like receptor subfamily F member 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053912579
VERSION     XP_053912579.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056604.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..254
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..254
                     /product="killer cell lectin-like receptor subfamily F
                     member 2 isoform X1"
                     /calculated_mol_wt=28658
     Region          51..>159
                     /region_name="PHA03097"
                     /note="C-type lectin-like protein; Provisional"
                     /db_xref="CDD:222982"
     Region          108..228
                     /region_name="CLECT_NK_receptors_like"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in natural killer cell receptors (NKRs); cd03593"
                     /db_xref="CDD:153063"
     Site            order(165,192,210,212..213)
                     /site_type="other"
                     /note="ligand binding surface [chemical binding]"
                     /db_xref="CDD:153063"
     CDS             1..254
                     /gene="LOC128850962"
                     /coded_by="XM_054056604.1:164..928"
                     /db_xref="GeneID:128850962"
ORIGIN      
        1 mpenliyadl nltestkprl qvtdiqgsmy aevkvqsldt naaanytsss krccsrtrvy
       61 vlaaviilll vlgvclivkl tsglvlatet srdplwpden ytqgntgcpq dweenrgkcy
      121 ffspkqkind wnasrqectd mnsdlviidn eeelhylysq srhsyyllgl vyhetekkwk
      181 winnmehstd mfaiggdftd yfcavigfhe vetapcsgal ttqnmcekaa niserqkeel
      241 kprgpgrtvi psll
//
LOCUS       XP_053912580             245 aa            linear   VRT 09-MAR-2023
DEFINITION  killer cell lectin-like receptor subfamily F member 2 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053912580
VERSION     XP_053912580.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056605.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..245
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..245
                     /product="killer cell lectin-like receptor subfamily F
                     member 2 isoform X2"
                     /calculated_mol_wt=27602
     Region          108..219
                     /region_name="CLECT"
                     /note="C-type lectin (CTL)/C-type lectin-like (CTLD)
                     domain; cl02432"
                     /db_xref="CDD:470576"
     Site            order(191,196,198,201,203..206,212..214)
                     /site_type="other"
                     /note="ligand binding surface [chemical binding]"
                     /db_xref="CDD:153063"
     CDS             1..245
                     /gene="LOC128850962"
                     /coded_by="XM_054056605.1:179..916"
                     /db_xref="GeneID:128850962"
ORIGIN      
        1 mpenliyadl nltestkprl qvtdiqgsmy aevkvqsldt naaanytsss krccsrtrvy
       61 vlaaviilll vlgvclivkl tsglvlatet srdplwpden ytqgntgcpq dweenrgkcy
      121 ffspkqkind wnasrqectd mnsdlhylys qsrhsyyllg lvyhetekkw kwinnmehst
      181 dmfaiggdft dyfcavigfh evetapcsga lttqnmceka aniserqkee lkprgpgrtv
      241 ipsll
//
LOCUS       XP_053912581             213 aa            linear   VRT 09-MAR-2023
DEFINITION  C-type lectin domain family 5 member A-like isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053912581
VERSION     XP_053912581.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056606.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..213
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..213
                     /product="C-type lectin domain family 5 member A-like
                     isoform X3"
                     /calculated_mol_wt=24544
     Region          67..187
                     /region_name="CLECT_NK_receptors_like"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in natural killer cell receptors (NKRs); cd03593"
                     /db_xref="CDD:153063"
     Site            order(124,151,169,171..172)
                     /site_type="other"
                     /note="ligand binding surface [chemical binding]"
                     /db_xref="CDD:153063"
     CDS             1..213
                     /gene="LOC128850962"
                     /coded_by="XM_054056606.1:1838..2479"
                     /db_xref="GeneID:128850962"
ORIGIN      
        1 mfhvfiffle velgqhyvav serrtdcspr pvqrspwlvt sglvlatets rdplwpdeny
       61 tqgntgcpqd weenrgkcyf fspkqkindw nasrqectdm nsdlviidne eelhylysqs
      121 rhsyyllglv yhetekkwkw innmehstdm faiggdftdy fcavigfhev etapcsgalt
      181 tqnmcekaan iserqkeelk prgpgrtvip sll
//
LOCUS       XP_053912583             328 aa            linear   VRT 09-MAR-2023
DEFINITION  inhibitor of growth protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912583
VERSION     XP_053912583.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056608.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..328
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..328
                     /product="inhibitor of growth protein 1 isoform X1"
                     /calculated_mol_wt=37827
     Region          69..156
                     /region_name="ING_ING1"
                     /note="Inhibitor of growth (ING) domain of inhibitor of
                     growth protein 1 (ING1); cd16860"
                     /db_xref="CDD:341093"
     Site            order(72,75..77,80,83,86,90,97,100..101,120..121,124,
                     127..128,131,134..135,138,141,144..145,148..149,151..152,
                     155..156)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:341093"
     Region          261..305
                     /region_name="PHD_ING1_2"
                     /note="PHD finger found in inhibitor of growth protein 1
                     (ING1) and 2 (ING2); cd15584"
                     /db_xref="CDD:277059"
     Site            order(261,268..276,283..284,287,295..296,298,300)
                     /site_type="other"
                     /note="H3K4me3 binding site [polypeptide binding]"
                     /db_xref="CDD:277059"
     CDS             1..328
                     /gene="ING1"
                     /coded_by="XM_054056608.1:98..1084"
                     /db_xref="GeneID:104068398"
ORIGIN      
        1 mgaterevgr sepfigvavf ggssacshrd trrergvekd iffflcrmkm lspangdqlh
       61 lvnyvedyld siesmpfdlq rnvslmreid akyqeilkdl ddyyekfkre tdavqkrrml
      121 hciqralirs qelgdekiqi vsqmvelven rtrqvdshme lfetcqetnd itgnsgkasq
      181 dksknetiaq aekpnnkrsr rqrnnenren asnnhdhddi tsgtpkekka ktskkkkrsk
      241 akaereaspp dlpidpnept yclcnqvsyg emigcdndec piewfhfscv glnhkpkgkw
      301 ycpkcrgene ktmdkaleks kkeraynr
//
LOCUS       XP_053912584             281 aa            linear   VRT 09-MAR-2023
DEFINITION  inhibitor of growth protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912584
VERSION     XP_053912584.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056609.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..281
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..281
                     /product="inhibitor of growth protein 1 isoform X2"
                     /calculated_mol_wt=32580
     Region          22..109
                     /region_name="ING_ING1"
                     /note="Inhibitor of growth (ING) domain of inhibitor of
                     growth protein 1 (ING1); cd16860"
                     /db_xref="CDD:341093"
     Site            order(25,28..30,33,36,39,43,50,53..54,73..74,77,80..81,84,
                     87..88,91,94,97..98,101..102,104..105,108..109)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:341093"
     Region          214..258
                     /region_name="PHD_ING1_2"
                     /note="PHD finger found in inhibitor of growth protein 1
                     (ING1) and 2 (ING2); cd15584"
                     /db_xref="CDD:277059"
     Site            order(214,221..229,236..237,240,248..249,251,253)
                     /site_type="other"
                     /note="H3K4me3 binding site [polypeptide binding]"
                     /db_xref="CDD:277059"
     CDS             1..281
                     /gene="ING1"
                     /coded_by="XM_054056609.1:333..1178"
                     /db_xref="GeneID:104068398"
ORIGIN      
        1 mkmlspangd qlhlvnyved yldsiesmpf dlqrnvslmr eidakyqeil kdlddyyekf
       61 kretdavqkr rmlhciqral irsqelgdek iqivsqmvel venrtrqvds hmelfetcqe
      121 tnditgnsgk asqdksknet iaqaekpnnk rsrrqrnnen renasnnhdh dditsgtpke
      181 kkaktskkkk rskakaerea sppdlpidpn eptyclcnqv sygemigcdn decpiewfhf
      241 scvglnhkpk gkwycpkcrg enektmdkal ekskkerayn r
//
LOCUS       XP_053912585             210 aa            linear   VRT 09-MAR-2023
DEFINITION  inhibitor of growth protein 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912585
VERSION     XP_053912585.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056610.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..210
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..210
                     /product="inhibitor of growth protein 1 isoform X3"
                     /calculated_mol_wt=24037
     Region          <1..188
                     /region_name="TNG2"
                     /note="Chromatin remodeling protein, contains PhD zinc
                     finger [Chromatin structure and dynamics]; COG5034"
                     /db_xref="CDD:227367"
     Region          143..187
                     /region_name="PHD_ING1_2"
                     /note="PHD finger found in inhibitor of growth protein 1
                     (ING1) and 2 (ING2); cd15584"
                     /db_xref="CDD:277059"
     Site            order(143,150..158,165..166,169,177..178,180,182)
                     /site_type="other"
                     /note="H3K4me3 binding site [polypeptide binding]"
                     /db_xref="CDD:277059"
     CDS             1..210
                     /gene="ING1"
                     /coded_by="XM_054056610.1:251..883"
                     /db_xref="GeneID:104068398"
ORIGIN      
        1 mlhciqrali rsqelgdeki qivsqmvelv enrtrqvdsh melfetcqet nditgnsgka
       61 sqdkskneti aqaekpnnkr srrqrnnenr enasnnhdhd ditsgtpkek kaktskkkkr
      121 skakaereas ppdlpidpne ptyclcnqvs ygemigcdnd ecpiewfhfs cvglnhkpkg
      181 kwycpkcrge nektmdkale kskkeraynr
//
LOCUS       XP_053912586             455 aa            linear   VRT 09-MAR-2023
DEFINITION  coagulation factor VII isoform X1 [Cuculus canorus].
ACCESSION   XP_053912586
VERSION     XP_053912586.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056611.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..455
                     /product="coagulation factor VII isoform X1"
                     /calculated_mol_wt=50745
     Region          55..115
                     /region_name="GLA"
                     /note="Domain containing Gla (gamma-carboxyglutamate)
                     residues; smart00069"
                     /db_xref="CDD:214503"
     Region          117..153
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; cd00054"
                     /db_xref="CDD:238011"
     Site            order(117,120,134)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238011"
     Region          162..198
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          222..453
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cd00190"
                     /db_xref="CDD:238113"
     Site            222
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(262,310,407)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(401,426,428)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..455
                     /gene="F7"
                     /coded_by="XM_054056611.1:128..1495"
                     /db_xref="GeneID:104056613"
ORIGIN      
        1 mtgtlarrvh hgfqavrgfv plpsatdssf sgcrgglkin ilkqrflnhg llvvvflkke
       61 eastifqrhr ransffeelk lgslerecme encsfeeare iyhddertke fwhiysdpnq
      121 cdsnpcqngg scddqfrdyv crcpaeyegk scekaiadkl kciydnggce qyctdrqsei
      181 rvcfcaddyt lasdgvscip qvkypcgkip vlankkasdg rivgglicpp gecpwqalii
      241 qngkekcggt llspewvvta ahcleythhk qlrvrlgeha inydekteqe sgvariithe
      301 gytagevnnd iallrletpv nltdyvvpic lpekrfavye lssikfstvs gwgrlldgga
      361 tssvlmrvnl prvktqecek etdlnitenm fcagdlsgvk dsckgdsggp hatkykntwf
      421 ltgivswgkg cavkgsygvy trvskyidwl kkhmd
//
LOCUS       XP_009556170             424 aa            linear   VRT 09-MAR-2023
DEFINITION  coagulation factor VII isoform X2 [Cuculus canorus].
ACCESSION   XP_009556170
VERSION     XP_009556170.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557875.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556170.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..424
                     /product="coagulation factor VII isoform X2"
                     /calculated_mol_wt=47399
     Region          22..84
                     /region_name="GLA"
                     /note="Domain containing Gla (gamma-carboxyglutamate)
                     residues; smart00069"
                     /db_xref="CDD:214503"
     Region          86..122
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; cd00054"
                     /db_xref="CDD:238011"
     Site            order(86,89,103)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238011"
     Region          131..167
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          191..422
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cd00190"
                     /db_xref="CDD:238113"
     Site            191
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(231,279,376)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(370,395,397)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..424
                     /gene="F7"
                     /coded_by="XM_009557875.2:142..1416"
                     /db_xref="GeneID:104056613"
ORIGIN      
        1 mvsrqcvalf lclpllipls ldavflkkee astifqrhrr ansffeelkl gslerecmee
       61 ncsfeearei yhddertkef whiysdpnqc dsnpcqnggs cddqfrdyvc rcpaeyegks
      121 cekaiadklk ciydnggceq yctdrqseir vcfcaddytl asdgvscipq vkypcgkipv
      181 lankkasdgr ivgglicppg ecpwqaliiq ngkekcggtl lspewvvtaa hcleythhkq
      241 lrvrlgehai nydekteqes gvariitheg ytagevnndi allrletpvn ltdyvvpicl
      301 pekrfavyel ssikfstvsg wgrlldggat ssvlmrvnlp rvktqeceke tdlnitenmf
      361 cagdlsgvkd sckgdsggph atkykntwfl tgivswgkgc avkgsygvyt rvskyidwlk
      421 khmd
//
LOCUS       XP_053912588              61 aa            linear   VRT 09-MAR-2023
DEFINITION  small integral membrane protein 30 [Cuculus canorus].
ACCESSION   XP_053912588
VERSION     XP_053912588.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056613.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..61
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..61
                     /product="small integral membrane protein 30"
                     /calculated_mol_wt=6309
     Region          <27..56
                     /region_name="DUF4730"
                     /note="Domain of unknown function (DUF4730); pfam15873"
                     /db_xref="CDD:292498"
     CDS             1..61
                     /gene="SMIM30"
                     /coded_by="XM_054056613.1:245..430"
                     /db_xref="GeneID:128850963"
ORIGIN      
        1 mpstestskl flvlilllmv lpvaealdag dtiafllgla vsvvgfcacl glyarkrngq
       61 q
//
LOCUS       XP_053912589              61 aa            linear   VRT 09-MAR-2023
DEFINITION  small integral membrane protein 30 [Cuculus canorus].
ACCESSION   XP_053912589
VERSION     XP_053912589.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056614.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..61
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..61
                     /product="small integral membrane protein 30"
                     /calculated_mol_wt=6309
     Region          <27..56
                     /region_name="DUF4730"
                     /note="Domain of unknown function (DUF4730); pfam15873"
                     /db_xref="CDD:292498"
     CDS             1..61
                     /gene="SMIM30"
                     /coded_by="XM_054056614.1:280..465"
                     /db_xref="GeneID:128850963"
ORIGIN      
        1 mpstestskl flvlilllmv lpvaealdag dtiafllgla vsvvgfcacl glyarkrngq
       61 q
//
LOCUS       XP_009559179             532 aa            linear   VRT 09-MAR-2023
DEFINITION  cystathionine beta-synthase [Cuculus canorus].
ACCESSION   XP_009559179
VERSION     XP_009559179.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560884.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009559179.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..532
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..532
                     /product="cystathionine beta-synthase"
                     /calculated_mol_wt=58163
     Region          62..527
                     /region_name="cysta_beta"
                     /note="cystathionine beta-synthase; TIGR01137"
                     /db_xref="CDD:273464"
     CDS             1..532
                     /gene="LOC104059240"
                     /coded_by="XM_009560884.2:217..1815"
                     /db_xref="GeneID:104059240"
ORIGIN      
        1 maemepmkgc llmngscags qkskadstwi lpnlpskctw taatpasksp hscmplqeet
       61 kilpnilkki gctpmvrvnk igksyglkce llakceyfna ggsakdrisl rmvedaerag
      121 iikpgdtlie ptsgntgigl alvaavkgyr ciivlpekms tekvdilkal gveivrtpca
      181 rfdapesnir vawklkseip nshildqyrn psnplahydt taeeileqce gkvhmvvigs
      241 gtggtvtgva rklkekcpec kiigvdpegs ivalpsemnr tnttvveveg ighdfiptvl
      301 drsvvdqwyk cndrdsflms rrlireegll cggssgsams vavqaakdlk egqrcvvilp
      361 dsvrnymskf lndkwmikng flndvqenkp wwwnikvqkl nlsaplillp evscqkaiei
      421 lqekgydqap vvaesglilg mvtlsntlts vmagktqfsd pvtnviydqf skigledslg
      481 klscilendh faivvheqmq fngngssfmk qtvfgvvtam dllafvsrne kk
//
LOCUS       XP_053912591             227 aa            linear   VRT 09-MAR-2023
DEFINITION  suppressor of cytokine signaling 1 [Cuculus canorus].
ACCESSION   XP_053912591
VERSION     XP_053912591.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056616.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..227
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..227
                     /product="suppressor of cytokine signaling 1"
                     /calculated_mol_wt=25420
     Region          51..146
                     /region_name="SH2_SOCS1"
                     /note="Src homology 2 (SH2) domain found in suppressor of
                     cytokine signaling (SOCS) proteins; cd10382"
                     /db_xref="CDD:198245"
     Site            order(69,87,89,97,110)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:198245"
     Site            order(120,122,135)
                     /site_type="other"
                     /note="hydrophobic binding pocket [polypeptide binding]"
                     /db_xref="CDD:198245"
     CDS             1..227
                     /gene="LOC104055528"
                     /coded_by="XM_054056616.1:471..1154"
                     /db_xref="GeneID:104055528"
ORIGIN      
        1 mirgrpddlh nthttvshpq rqhrsvlpsp ahptlpdrfr mfrswewevl erslnilqas
       61 dfywgplsvg eahaklqrep vgtylvrdss qgnclfslsv rmptgpvslr isfqegyfrl
      121 knwfsdcvvr llelvvagtr nnplhfdemg gtplvfsepl crsrrsvptl relccrsipa
      181 stttgdgagl egslgmhsre emvsppgrrr gsegsmvpsp sptwarr
//
LOCUS       XP_053912592             227 aa            linear   VRT 09-MAR-2023
DEFINITION  suppressor of cytokine signaling 1 [Cuculus canorus].
ACCESSION   XP_053912592
VERSION     XP_053912592.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056617.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..227
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..227
                     /product="suppressor of cytokine signaling 1"
                     /calculated_mol_wt=25420
     Region          51..146
                     /region_name="SH2_SOCS1"
                     /note="Src homology 2 (SH2) domain found in suppressor of
                     cytokine signaling (SOCS) proteins; cd10382"
                     /db_xref="CDD:198245"
     Site            order(69,87,89,97,110)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:198245"
     Site            order(120,122,135)
                     /site_type="other"
                     /note="hydrophobic binding pocket [polypeptide binding]"
                     /db_xref="CDD:198245"
     CDS             1..227
                     /gene="LOC104055528"
                     /coded_by="XM_054056617.1:347..1030"
                     /db_xref="GeneID:104055528"
ORIGIN      
        1 mirgrpddlh nthttvshpq rqhrsvlpsp ahptlpdrfr mfrswewevl erslnilqas
       61 dfywgplsvg eahaklqrep vgtylvrdss qgnclfslsv rmptgpvslr isfqegyfrl
      121 knwfsdcvvr llelvvagtr nnplhfdemg gtplvfsepl crsrrsvptl relccrsipa
      181 stttgdgagl egslgmhsre emvsppgrrr gsegsmvpsp sptwarr
//
LOCUS       XP_053912593             227 aa            linear   VRT 09-MAR-2023
DEFINITION  suppressor of cytokine signaling 1 [Cuculus canorus].
ACCESSION   XP_053912593
VERSION     XP_053912593.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056618.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..227
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..227
                     /product="suppressor of cytokine signaling 1"
                     /calculated_mol_wt=25420
     Region          51..146
                     /region_name="SH2_SOCS1"
                     /note="Src homology 2 (SH2) domain found in suppressor of
                     cytokine signaling (SOCS) proteins; cd10382"
                     /db_xref="CDD:198245"
     Site            order(69,87,89,97,110)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:198245"
     Site            order(120,122,135)
                     /site_type="other"
                     /note="hydrophobic binding pocket [polypeptide binding]"
                     /db_xref="CDD:198245"
     CDS             1..227
                     /gene="LOC104055528"
                     /coded_by="XM_054056618.1:1732..2415"
                     /db_xref="GeneID:104055528"
ORIGIN      
        1 mirgrpddlh nthttvshpq rqhrsvlpsp ahptlpdrfr mfrswewevl erslnilqas
       61 dfywgplsvg eahaklqrep vgtylvrdss qgnclfslsv rmptgpvslr isfqegyfrl
      121 knwfsdcvvr llelvvagtr nnplhfdemg gtplvfsepl crsrrsvptl relccrsipa
      181 stttgdgagl egslgmhsre emvsppgrrr gsegsmvpsp sptwarr
//
LOCUS       XP_053912594             227 aa            linear   VRT 09-MAR-2023
DEFINITION  suppressor of cytokine signaling 1 [Cuculus canorus].
ACCESSION   XP_053912594
VERSION     XP_053912594.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056619.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..227
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..227
                     /product="suppressor of cytokine signaling 1"
                     /calculated_mol_wt=25420
     Region          51..146
                     /region_name="SH2_SOCS1"
                     /note="Src homology 2 (SH2) domain found in suppressor of
                     cytokine signaling (SOCS) proteins; cd10382"
                     /db_xref="CDD:198245"
     Site            order(69,87,89,97,110)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:198245"
     Site            order(120,122,135)
                     /site_type="other"
                     /note="hydrophobic binding pocket [polypeptide binding]"
                     /db_xref="CDD:198245"
     CDS             1..227
                     /gene="LOC104055528"
                     /coded_by="XM_054056619.1:649..1332"
                     /db_xref="GeneID:104055528"
ORIGIN      
        1 mirgrpddlh nthttvshpq rqhrsvlpsp ahptlpdrfr mfrswewevl erslnilqas
       61 dfywgplsvg eahaklqrep vgtylvrdss qgnclfslsv rmptgpvslr isfqegyfrl
      121 knwfsdcvvr llelvvagtr nnplhfdemg gtplvfsepl crsrrsvptl relccrsipa
      181 stttgdgagl egslgmhsre emvsppgrrr gsegsmvpsp sptwarr
//
LOCUS       XP_053912595             388 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP-ribosylarginine hydrolase isoform X1 [Cuculus canorus].
ACCESSION   XP_053912595
VERSION     XP_053912595.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056620.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..388
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..388
                     /product="ADP-ribosylarginine hydrolase isoform X1"
                     /calculated_mol_wt=43024
     Region          44..142
                     /region_name="Tim17"
                     /note="Tim17/Tim22/Tim23/Pmp24 family; pfam02466"
                     /db_xref="CDD:460567"
     Region          <171..363
                     /region_name="ADP_ribosyl_GH"
                     /note="ADP-ribosylglycohydrolase; pfam03747"
                     /db_xref="CDD:461037"
     CDS             1..388
                     /gene="ADPRH"
                     /coded_by="XM_054056620.1:41..1207"
                     /db_xref="GeneID:104055985"
ORIGIN      
        1 msegssgqsl fgrpaappes gwerlrelwr rderqrlpee tvnivkaaft aglagwlygg
       61 lpafrqarta fiqrshgelf qnradavqsa hraglrgfir ygwrwswrvt tfvtifnvvs
      121 tglsvyhnkn tisnyasagg gtcevnalkl dpgrpdgwri pfspqaggcg aamrsmcigl
      181 rfrhpaeldt lmqvsiesgr mthhhptgyl gslasslfta favnrvpppa wgkkllellp
      241 rakvyvkesg ffveenmgqw hyfeekweky laergisdgv slptfpsnyg veerdsfyts
      301 lsysgwggss ghdapmiayd allgagdswa elahraffhg gdsdstaaia acwwgamygf
      361 qgvspslysh leyrnrlerv akdlyria
//
LOCUS       XP_053912596             383 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP-ribosylarginine hydrolase isoform X2 [Cuculus canorus].
ACCESSION   XP_053912596
VERSION     XP_053912596.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056621.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..383
                     /product="ADP-ribosylarginine hydrolase isoform X2"
                     /calculated_mol_wt=41799
     Region          41..358
                     /region_name="ADP_ribosyl_GH"
                     /note="ADP-ribosylglycohydrolase; pfam03747"
                     /db_xref="CDD:461037"
     CDS             1..383
                     /gene="ADPRH"
                     /coded_by="XM_054056621.1:91..1242"
                     /db_xref="GeneID:104055985"
ORIGIN      
        1 mppprqgcpp waliaglaav ffieavlgqk lcpkamekyv asmvlsavgd algyyngkwe
       61 flrsgpaihk elaemgglgn lsiqgwkvsd dtvmhlatae alvaagkkps lehlysliak
      121 nykecmndme grapggtcev nalkldpgrp dgwripfspq aggcgaamrs mciglrfrhp
      181 aeldtlmqvs iesgrmthhh ptgylgslas slftafavnr vpppawgkkl lellprakvy
      241 vkesgffvee nmgqwhyfee kwekylaerg isdgvslptf psnygveerd sfytslsysg
      301 wggssghdap miaydallga gdswaelahr affhggdsds taaiaacwwg amygfqgvsp
      361 slyshleyrn rlervakdly ria
//
LOCUS       XP_053912597             348 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP-ribosylarginine hydrolase isoform X3 [Cuculus canorus].
ACCESSION   XP_053912597
VERSION     XP_053912597.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056622.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..348
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..348
                     /product="ADP-ribosylarginine hydrolase isoform X3"
                     /calculated_mol_wt=38125
     Region          6..323
                     /region_name="ADP_ribosyl_GH"
                     /note="ADP-ribosylglycohydrolase; pfam03747"
                     /db_xref="CDD:461037"
     CDS             1..348
                     /gene="ADPRH"
                     /coded_by="XM_054056622.1:190..1236"
                     /db_xref="GeneID:104055985"
ORIGIN      
        1 mekyvasmvl savgdalgyy ngkweflrsg paihkelaem gglgnlsiqg wkvsddtvmh
       61 lataealvaa gkkpslehly sliaknykec mndmegrapg gtcevnalkl dpgrpdgwri
      121 pfspqaggcg aamrsmcigl rfrhpaeldt lmqvsiesgr mthhhptgyl gslasslfta
      181 favnrvpppa wgkkllellp rakvyvkesg ffveenmgqw hyfeekweky laergisdgv
      241 slptfpsnyg veerdsfyts lsysgwggss ghdapmiayd allgagdswa elahraffhg
      301 gdsdstaaia acwwgamygf qgvspslysh leyrnrlerv akdlyria
//
LOCUS       XP_053912599             348 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP-ribosylarginine hydrolase isoform X3 [Cuculus canorus].
ACCESSION   XP_053912599
VERSION     XP_053912599.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056624.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..348
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..348
                     /product="ADP-ribosylarginine hydrolase isoform X3"
                     /calculated_mol_wt=38125
     Region          6..323
                     /region_name="ADP_ribosyl_GH"
                     /note="ADP-ribosylglycohydrolase; pfam03747"
                     /db_xref="CDD:461037"
     CDS             1..348
                     /gene="ADPRH"
                     /coded_by="XM_054056624.1:186..1232"
                     /db_xref="GeneID:104055985"
ORIGIN      
        1 mekyvasmvl savgdalgyy ngkweflrsg paihkelaem gglgnlsiqg wkvsddtvmh
       61 lataealvaa gkkpslehly sliaknykec mndmegrapg gtcevnalkl dpgrpdgwri
      121 pfspqaggcg aamrsmcigl rfrhpaeldt lmqvsiesgr mthhhptgyl gslasslfta
      181 favnrvpppa wgkkllellp rakvyvkesg ffveenmgqw hyfeekweky laergisdgv
      241 slptfpsnyg veerdsfyts lsysgwggss ghdapmiayd allgagdswa elahraffhg
      301 gdsdstaaia acwwgamygf qgvspslysh leyrnrlerv akdlyria
//
LOCUS       XP_053912600             348 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP-ribosylarginine hydrolase isoform X3 [Cuculus canorus].
ACCESSION   XP_053912600
VERSION     XP_053912600.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056625.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..348
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..348
                     /product="ADP-ribosylarginine hydrolase isoform X3"
                     /calculated_mol_wt=38125
     Region          6..323
                     /region_name="ADP_ribosyl_GH"
                     /note="ADP-ribosylglycohydrolase; pfam03747"
                     /db_xref="CDD:461037"
     CDS             1..348
                     /gene="ADPRH"
                     /coded_by="XM_054056625.1:198..1244"
                     /db_xref="GeneID:104055985"
ORIGIN      
        1 mekyvasmvl savgdalgyy ngkweflrsg paihkelaem gglgnlsiqg wkvsddtvmh
       61 lataealvaa gkkpslehly sliaknykec mndmegrapg gtcevnalkl dpgrpdgwri
      121 pfspqaggcg aamrsmcigl rfrhpaeldt lmqvsiesgr mthhhptgyl gslasslfta
      181 favnrvpppa wgkkllellp rakvyvkesg ffveenmgqw hyfeekweky laergisdgv
      241 slptfpsnyg veerdsfyts lsysgwggss ghdapmiayd allgagdswa elahraffhg
      301 gdsdstaaia acwwgamygf qgvspslysh leyrnrlerv akdlyria
//
LOCUS       XP_053912601             348 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP-ribosylarginine hydrolase isoform X3 [Cuculus canorus].
ACCESSION   XP_053912601
VERSION     XP_053912601.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056626.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..348
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..348
                     /product="ADP-ribosylarginine hydrolase isoform X3"
                     /calculated_mol_wt=38125
     Region          6..323
                     /region_name="ADP_ribosyl_GH"
                     /note="ADP-ribosylglycohydrolase; pfam03747"
                     /db_xref="CDD:461037"
     CDS             1..348
                     /gene="ADPRH"
                     /coded_by="XM_054056626.1:949..1995"
                     /db_xref="GeneID:104055985"
ORIGIN      
        1 mekyvasmvl savgdalgyy ngkweflrsg paihkelaem gglgnlsiqg wkvsddtvmh
       61 lataealvaa gkkpslehly sliaknykec mndmegrapg gtcevnalkl dpgrpdgwri
      121 pfspqaggcg aamrsmcigl rfrhpaeldt lmqvsiesgr mthhhptgyl gslasslfta
      181 favnrvpppa wgkkllellp rakvyvkesg ffveenmgqw hyfeekweky laergisdgv
      241 slptfpsnyg veerdsfyts lsysgwggss ghdapmiayd allgagdswa elahraffhg
      301 gdsdstaaia acwwgamygf qgvspslysh leyrnrlerv akdlyria
//
LOCUS       XP_053912602             309 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP-ribosylarginine hydrolase isoform X4 [Cuculus canorus].
ACCESSION   XP_053912602
VERSION     XP_053912602.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056627.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..309
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..309
                     /product="ADP-ribosylarginine hydrolase isoform X4"
                     /calculated_mol_wt=34146
     Region          <13..63
                     /region_name="Tim17"
                     /note="Tim17/Tim22/Tim23/Pmp24 family; pfam02466"
                     /db_xref="CDD:460567"
     Region          <92..284
                     /region_name="ADP_ribosyl_GH"
                     /note="ADP-ribosylglycohydrolase; pfam03747"
                     /db_xref="CDD:461037"
     CDS             1..309
                     /gene="ADPRH"
                     /coded_by="XM_054056627.1:1032..1961"
                     /db_xref="GeneID:104055985"
ORIGIN      
        1 mgclvsdrqs ahraglrgfi rygwrwswrv ttfvtifnvv stglsvyhnk ntisnyasag
       61 ggtcevnalk ldpgrpdgwr ipfspqaggc gaamrsmcig lrfrhpaeld tlmqvsiesg
      121 rmthhhptgy lgslasslft afavnrvppp awgkkllell prakvyvkes gffveenmgq
      181 whyfeekwek ylaergisdg vslptfpsny gveerdsfyt slsysgwggs sghdapmiay
      241 dallgagdsw aelahraffh ggdsdstaai aacwwgamyg fqgvspslys hleyrnrler
      301 vakdlyria
//
LOCUS       XP_053912603             376 aa            linear   VRT 09-MAR-2023
DEFINITION  T-lymphocyte activation antigen CD80 [Cuculus canorus].
ACCESSION   XP_053912603
VERSION     XP_053912603.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056628.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..376
                     /product="T-lymphocyte activation antigen CD80"
                     /calculated_mol_wt=40660
     Region          111..204
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          127..131
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409508"
     Region          164..168
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409508"
     Region          178..183
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409508"
     Region          197..200
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409508"
     Region          211..295
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          227..231
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409505"
     Region          241..245
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409505"
     Region          270..274
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409505"
     Region          281..286
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409505"
     CDS             1..376
                     /gene="LOC104056025"
                     /coded_by="XM_054056628.1:101..1231"
                     /db_xref="GeneID:104056025"
ORIGIN      
        1 mrlsalppit qpspctltrs dclggpvaga gclwlgtetp assplqgvas gplaqesrrs
       61 yrkmaclpat plaldlrkwl glglfvllcl hlgyglekkt vnskvgakvg lpccheipss
      121 eslqnyrvyw qknttevvla yaegkkisth kryenrtemn tsnltllisa veildngsyq
      181 cvvqhrrssq npvvvcdesl tlfvtadfsm pnitaevsae tcestemvvk cssyggfpkp
      241 kisgainnes vvwnaswvse snfspynvtg elrlnvtked nitcsveysg fakstslllk
      301 ntnkcivpta ppsynvitas siiiiislla ialaaryfsr qvcsrcykaq dsveegekec
      361 mkpamspkvt seassv
//
LOCUS       XP_053912604             420 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat domain-containing protein 10 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912604
VERSION     XP_053912604.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056629.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..420
                     /product="ankyrin repeat domain-containing protein 10
                     isoform X1"
                     /calculated_mol_wt=45109
     Region          <22..179
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          22..51
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(54,56,60..61,64..66,68..69,73,76,86,88,90,94..95,
                     98..100,102..103,107,110,119,121,123,127..128,131..133,
                     135..136,140,143,152)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          54..86
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          88..119
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          121..152
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..420
                     /gene="ANKRD10"
                     /coded_by="XM_054056629.1:93..1355"
                     /db_xref="GeneID:104068399"
ORIGIN      
        1 mslgagaeag fsseelltlr fplhracrdg dlpalcallq ssprsdlvae dsfygwtpih
       61 waahfgklec lmqlvkagas vnasttrfaq tpahiaafgg hprclnwliq mganvnkqdy
      121 vgetpihkaa rcgsmdsiyv llpcgaqidl rnasgltaad laqtqgfqec aqflmnlqkc
      181 hincfysngn lngvhqnadp npfsggmsrk rsfedmesag akkarteays idglipmmng
      241 gaeddadnmh vdrefavvsg vflnadmnss ssilnaltng yainghsdft aaqqlsgmda
      301 rreeclaltp ngiisgitsp srhrihtsng teepekavnn stdmcgslhl ngspsscvsn
      361 rpswvedpgd tlhyghyhgf gdtaesipel ssvvehsnsv kveqrydntv lgtmylyhgs
//
LOCUS       XP_053912605             414 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat domain-containing protein 10 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912605
VERSION     XP_053912605.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056630.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..414
                     /product="ankyrin repeat domain-containing protein 10
                     isoform X2"
                     /calculated_mol_wt=44508
     Region          <22..179
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          22..51
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(54,56,60..61,64..66,68..69,73,76,86,88,90,94..95,
                     98..100,102..103,107,110,119,121,123,127..128,131..133,
                     135..136,140,143,152)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          54..86
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          88..119
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          121..152
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..414
                     /gene="ANKRD10"
                     /coded_by="XM_054056630.1:93..1337"
                     /db_xref="GeneID:104068399"
ORIGIN      
        1 mslgagaeag fsseelltlr fplhracrdg dlpalcallq ssprsdlvae dsfygwtpih
       61 waahfgklec lmqlvkagas vnasttrfaq tpahiaafgg hprclnwliq mganvnkqdy
      121 vgetpihkaa rcgsmdsiyv llpcgaqidl rnasgltaad laqtqgfqec aqflmnlqkc
      181 hincfysngn lngvhqnadp npfsggmsrk rsfedmesag akkarteays idglipmmng
      241 gaeddadnmh vdrefavvsd mnssssilna ltngyaingh sdftaaqqls gmdarreecl
      301 altpngiisg itspsrhrih tsngteepek avnnstdmcg slhlngspss cvsnrpswve
      361 dpgdtlhygh yhgfgdtaes ipelssvveh snsvkveqry dntvlgtmyl yhgs
//
LOCUS       XP_009563416             291 aa            linear   VRT 09-MAR-2023
DEFINITION  tumor necrosis factor ligand superfamily member 13B [Cuculus
            canorus].
ACCESSION   XP_009563416
VERSION     XP_009563416.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565121.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009563416.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..291
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..291
                     /product="tumor necrosis factor ligand superfamily member
                     13B"
                     /calculated_mol_wt=31954
     Region          151..288
                     /region_name="TNF"
                     /note="Tumor Necrosis Factor; TNF superfamily members
                     include the cytokines: TNF (TNF-alpha), LT
                     (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL),
                     Fas ligand, and osteoprotegerin (OPG) ligand. These
                     proteins generally have an intracellular N-terminal...;
                     cd00184"
                     /db_xref="CDD:238108"
     Site            order(154,200,202,252,257,284,288)
                     /site_type="other"
                     /note="trimer interface [polypeptide binding]"
                     /db_xref="CDD:238108"
     Site            order(175,177,215,222,231)
                     /site_type="active"
                     /note="receptor binding sites [active]"
                     /db_xref="CDD:238108"
     CDS             1..291
                     /gene="TNFSF13B"
                     /coded_by="XM_009565121.2:319..1194"
                     /db_xref="GeneID:104062978"
ORIGIN      
        1 mksvdcvhvi qqkdtassps apsgaasgtt glfsvtflwl amllssclaa lslyhvitlk
       61 telealrsdl iyrvqakspl drppvyhlsp denkagtpvs silqvsasgt rqenrfpgpg
      121 paesfqkeiw ngsrnrgrrs lvhtdetvlq aclqliadsk sdiqqiddss ivpwllsfkr
      181 gtaleeqgnk iiiketgyff iygqvlytdt tfamghliqr kkahvfgddl slvtlfrciq
      241 nmpqsypnns cytagiakle egdelqltip rrrakisldg dgtffgavrl l
//
LOCUS       XP_009560766             190 aa            linear   VRT 09-MAR-2023
DEFINITION  C->U-editing enzyme APOBEC-1 [Cuculus canorus].
ACCESSION   XP_009560766
VERSION     XP_009560766.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009562471.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009560766.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..190
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..190
                     /product="C->U-editing enzyme APOBEC-1"
                     /calculated_mol_wt=22470
     Region          33..149
                     /region_name="SNAD4"
                     /note="Secreted Novel AID/APOBEC-like Deaminase 4;
                     pfam18750"
                     /db_xref="CDD:465854"
     CDS             1..190
                     /gene="LOC104060660"
                     /coded_by="XM_009562471.2:94..666"
                     /db_xref="GeneID:104060660"
ORIGIN      
        1 myrrklrgmy iskrvlmhhf dphvvprday llcklqwgen gtpwihwvkn yhyhaevyfl
       61 kkifkmrrss syvncsitwf lswspcadcc rkimdflmkh syvnidirva rlyfiedpki
      121 rqglknlvsl agvniavmei kdyklcwenf ihgdaddcfw tagfqskite nvlklkdvfe
      181 dcrgltpgcn
//
LOCUS       XP_053912607             267 aa            linear   VRT 09-MAR-2023
DEFINITION  store-operated calcium entry regulator STIMATE [Cuculus canorus].
ACCESSION   XP_053912607
VERSION     XP_053912607.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056632.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..267
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..267
                     /product="store-operated calcium entry regulator STIMATE"
                     /calculated_mol_wt=30210
     Region          83..204
                     /region_name="STIMATE"
                     /note="STIMATE family; pfam12400"
                     /db_xref="CDD:463561"
     CDS             1..267
                     /gene="LOC104066501"
                     /coded_by="XM_054056632.1:67..870"
                     /db_xref="GeneID:104066501"
ORIGIN      
        1 maaprpahgc gsgallgrfg vllqallalc afstlmlkrf kepkeerrpw riwfydtskq
       61 aigalfihfa nvflsdltee dpcslylinf ildatlgmll iwlgvkvvsw ivqrkkytyl
      121 vfgeygdppq aaawigqcil yllimvfekt vislvllipg wtklqqillg yipnpqleli
      181 lvmlvvpfiv naimfwvvds limrkykqkd tldingstet prarrteesq vllspdmdfd
      241 qsesdqdtsg lqgtnqkmkq psyqvvi
//
LOCUS       XP_053912608              62 aa            linear   VRT 09-MAR-2023
DEFINITION  calmodulin regulator protein PCP4 [Cuculus canorus].
ACCESSION   XP_053912608
VERSION     XP_053912608.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056633.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..62
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..62
                     /product="calmodulin regulator protein PCP4"
                     /calculated_mol_wt=6704
     CDS             1..62
                     /gene="PCP4"
                     /coded_by="XM_054056633.1:99..287"
                     /db_xref="GeneID:104059264"
ORIGIN      
        1 mserqgtgat ngkdktsgen dgqkkvqeef didmeapete raavaiqsqf rkfqkkkags
       61 qs
//
LOCUS       XP_053912609             372 aa            linear   VRT 09-MAR-2023
DEFINITION  dnaJ homolog subfamily C member 28 [Cuculus canorus].
ACCESSION   XP_053912609
VERSION     XP_053912609.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056634.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..372
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..372
                     /product="dnaJ homolog subfamily C member 28"
                     /calculated_mol_wt=43229
     Region          46..>163
                     /region_name="DnaJ"
                     /note="DnaJ-class molecular chaperone with C-terminal Zn
                     finger domain [Posttranslational modification, protein
                     turnover, chaperones]; COG0484"
                     /db_xref="CDD:440252"
     Region          46..98
                     /region_name="DnaJ"
                     /note="DnaJ molecular chaperone homology domain;
                     smart00271"
                     /db_xref="CDD:197617"
     Site            order(72..74,85..86,89..90)
                     /site_type="other"
                     /note="HSP70 interaction site [polypeptide binding]"
                     /db_xref="CDD:99751"
     Region          <194..329
                     /region_name="PLN03085"
                     /note="nucleobase:cation symporter-1; Provisional"
                     /db_xref="CDD:215566"
     CDS             1..372
                     /gene="DNAJC28"
                     /coded_by="XM_054056634.1:444..1562"
                     /db_xref="GeneID:104064757"
ORIGIN      
        1 mltnnighhl tvcqamiprn vklfpyicgs rmlsgykpks nikesykile leegcslddi
       61 rnsyrslakk yhpdsgsata dseafmkvee ayrvvlsdvt tkkktsetne eeedqfksna
      121 pqhrhylsye gvgfgtpsqr ekqymqfrvd rateqvleyr kqrlesqyav tdlmkakdvk
      181 qskkvkitqa verlvedliq esmakgdfdn lsgkgkplqk fsdcphidpm thnlnrilid
      241 ngyqpewilm qkeiretier lrknlvqars nlggqmtpyr qkqwnracee fiedirklnk
      301 ridsfnlvvp llsrqmvhfs adkeivraqk syevlmanre asnsdtkene ednierfgwk
      361 ssllkwlnlk lk
//
LOCUS       XP_053912610             230 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related protein Rab-20 [Cuculus canorus].
ACCESSION   XP_053912610
VERSION     XP_053912610.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056635.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..230
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..230
                     /product="ras-related protein Rab-20"
                     /calculated_mol_wt=25521
     Region          7..229
                     /region_name="Rab20"
                     /note="Rab GTPase family 20 (Rab20); cd04126"
                     /db_xref="CDD:133326"
     Site            12..19
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:133326"
     Site            order(14..20,30,35..36,58,113..114,116,179..181)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:133326"
     Site            order(20..30,34..35)
                     /site_type="other"
                     /note="Rab subfamily motif 2 (RabSF2)"
                     /db_xref="CDD:133326"
     Site            order(30,34..42)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:133326"
     Site            order(34,38..45,48,50)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133326"
     Site            36
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:133326"
     Site            order(37,39..41,52,54,61..62,65,69,74)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:133326"
     Site            order(37..38,40,54..55,62,64,66..68)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133326"
     Site            37..41
                     /site_type="other"
                     /note="Rab family motif 1 (RabF1)"
                     /db_xref="CDD:133326"
     Site            50..54
                     /site_type="other"
                     /note="Rab family motif 2 (RabF2)"
                     /db_xref="CDD:133326"
     Site            55..58
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:133326"
     Site            order(58,60..70)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:133326"
     Site            61..66
                     /site_type="other"
                     /note="Rab family motif 3 (RabF3)"
                     /db_xref="CDD:133326"
     Site            69..73
                     /site_type="other"
                     /note="Rab family motif 4 (RabF4)"
                     /db_xref="CDD:133326"
     Site            78..83
                     /site_type="other"
                     /note="Rab family motif 5 (RabF5)"
                     /db_xref="CDD:133326"
     Site            106..110
                     /site_type="other"
                     /note="Rab subfamily motif 3 (RabSF3)"
                     /db_xref="CDD:133326"
     Site            113..116
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:133326"
     Site            179..181
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:133326"
     Site            195..197
                     /site_type="other"
                     /note="Rab subfamily motif 4 (RabSF4)"
                     /db_xref="CDD:133326"
     Site            228..229
                     /site_type="other"
                     /note="putative lipid modification site [posttranslational
                     modification]"
                     /db_xref="CDD:133326"
     CDS             1..230
                     /gene="RAB20"
                     /coded_by="XM_054056635.1:88..780"
                     /db_xref="GeneID:104054961"
ORIGIN      
        1 mkkpdgkvvl lgdmnvgkts llhrymerrf qetvstvgga fylkqwgpyn isiwdtagre
       61 qfhglgsmyc rgaaavilty dvnslqslte leerflaltd sasadcifai vgnkvdltdd
      121 calaldenrp eksvascgsk vrkqvrveda ialykkilky kmldekdvpa aekmcfetsa
      181 ktgykvdylf etvfdmvvpi ivrqkaegpp qtvditdykp akrtksscca
//
LOCUS       XP_053912611             281 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP3K7 C-terminal-like protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053912611
VERSION     XP_053912611.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056636.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..281
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..281
                     /product="MAP3K7 C-terminal-like protein isoform X1"
                     /calculated_mol_wt=31575
     Region          206..>278
                     /region_name="YhaN"
                     /note="Uncharacterized conserved protein YhaN, contains
                     AAA domain [Function unknown]; COG4717"
                     /db_xref="CDD:443752"
     CDS             1..281
                     /gene="MAP3K7CL"
                     /coded_by="XM_054056636.1:332..1177"
                     /db_xref="GeneID:104064772"
ORIGIN      
        1 mtclldgaaa lheevksrir itavveksll ypvphrlemv ilrstkkfgf cgcyegiysi
       61 ttadkwnils dfsylansep ydpsvignst agaafsfiea llqkgndkpr qwlaldytsa
      121 dtplseleqs sksidssahm ittarvpadk qvriafsldd spddassens fplafpeldq
      181 hlqplppchd skesmqvykq hckiaeeyhe vkkeiallee rkkeliarle qvekesmdaa
      241 qlakeyaelt eenrtlklaq tqcveqlekl riqyqkrqgs s
//
LOCUS       XP_009565436             161 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP3K7 C-terminal-like protein isoform X2 [Cuculus canorus].
ACCESSION   XP_009565436
VERSION     XP_009565436.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009567141.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..161
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..161
                     /product="MAP3K7 C-terminal-like protein isoform X2"
                     /calculated_mol_wt=18242
     Region          <84..>160
                     /region_name="GumC"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; COG3206"
                     /db_xref="CDD:442439"
     CDS             1..161
                     /gene="MAP3K7CL"
                     /coded_by="XM_009567141.2:43..528"
                     /db_xref="GeneID:104064772"
ORIGIN      
        1 magskqleqs sksidssahm ittarvpadk qvriafsldd spddassens fplafpeldq
       61 hlqplppchd skesmqvykq hckiaeeyhe vkkeiallee rkkeliarle qvekesmdaa
      121 qlakeyaelt eenrtlklaq tqcveqlekl riqyqkrqgs s
//
LOCUS       XP_053912612             160 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP3K7 C-terminal-like protein isoform X3 [Cuculus canorus].
ACCESSION   XP_053912612
VERSION     XP_053912612.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056637.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..160
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..160
                     /product="MAP3K7 C-terminal-like protein isoform X3"
                     /calculated_mol_wt=18266
     Region          <83..>159
                     /region_name="GumC"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; COG3206"
                     /db_xref="CDD:442439"
     CDS             1..160
                     /gene="MAP3K7CL"
                     /coded_by="XM_054056637.1:104..586"
                     /db_xref="GeneID:104064772"
ORIGIN      
        1 mrlilleqss ksidssahmi ttarvpadkq vriafsldds pddassensf plafpeldqh
       61 lqplppchds kesmqvykqh ckiaeeyhev kkeialleer kkeliarleq vekesmdaaq
      121 lakeyaelte enrtlklaqt qcveqleklr iqyqkrqgss
//
LOCUS       XP_009565437             142 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP3K7 C-terminal-like protein isoform X4 [Cuculus canorus].
ACCESSION   XP_009565437
VERSION     XP_009565437.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009567142.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..142
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..142
                     /product="MAP3K7 C-terminal-like protein isoform X4"
                     /calculated_mol_wt=16268
     Region          <65..>141
                     /region_name="GumC"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; COG3206"
                     /db_xref="CDD:442439"
     CDS             1..142
                     /gene="MAP3K7CL"
                     /coded_by="XM_009567142.2:796..1224"
                     /db_xref="GeneID:104064772"
ORIGIN      
        1 mittarvpad kqvriafsld dspddassen sfplafpeld qhlqplppch dskesmqvyk
       61 qhckiaeeyh evkkeialle erkkeliarl eqvekesmda aqlakeyael teenrtlkla
      121 qtqcveqlek lriqyqkrqg ss
//
LOCUS       XP_053912613             142 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP3K7 C-terminal-like protein isoform X4 [Cuculus canorus].
ACCESSION   XP_053912613
VERSION     XP_053912613.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056638.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..142
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..142
                     /product="MAP3K7 C-terminal-like protein isoform X4"
                     /calculated_mol_wt=16268
     Region          <65..>141
                     /region_name="GumC"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; COG3206"
                     /db_xref="CDD:442439"
     CDS             1..142
                     /gene="MAP3K7CL"
                     /coded_by="XM_054056638.1:665..1093"
                     /db_xref="GeneID:104064772"
ORIGIN      
        1 mittarvpad kqvriafsld dspddassen sfplafpeld qhlqplppch dskesmqvyk
       61 qhckiaeeyh evkkeialle erkkeliarl eqvekesmda aqlakeyael teenrtlkla
      121 qtqcveqlek lriqyqkrqg ss
//
LOCUS       XP_053912615             142 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP3K7 C-terminal-like protein isoform X4 [Cuculus canorus].
ACCESSION   XP_053912615
VERSION     XP_053912615.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056640.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..142
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..142
                     /product="MAP3K7 C-terminal-like protein isoform X4"
                     /calculated_mol_wt=16268
     Region          <65..>141
                     /region_name="GumC"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; COG3206"
                     /db_xref="CDD:442439"
     CDS             1..142
                     /gene="MAP3K7CL"
                     /coded_by="XM_054056640.1:651..1079"
                     /db_xref="GeneID:104064772"
ORIGIN      
        1 mittarvpad kqvriafsld dspddassen sfplafpeld qhlqplppch dskesmqvyk
       61 qhckiaeeyh evkkeialle erkkeliarl eqvekesmda aqlakeyael teenrtlkla
      121 qtqcveqlek lriqyqkrqg ss
//
LOCUS       XP_053912616             142 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP3K7 C-terminal-like protein isoform X4 [Cuculus canorus].
ACCESSION   XP_053912616
VERSION     XP_053912616.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056641.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..142
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..142
                     /product="MAP3K7 C-terminal-like protein isoform X4"
                     /calculated_mol_wt=16268
     Region          <65..>141
                     /region_name="GumC"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; COG3206"
                     /db_xref="CDD:442439"
     CDS             1..142
                     /gene="MAP3K7CL"
                     /coded_by="XM_054056641.1:430..858"
                     /db_xref="GeneID:104064772"
ORIGIN      
        1 mittarvpad kqvriafsld dspddassen sfplafpeld qhlqplppch dskesmqvyk
       61 qhckiaeeyh evkkeialle erkkeliarl eqvekesmda aqlakeyael teenrtlkla
      121 qtqcveqlek lriqyqkrqg ss
//
LOCUS       XP_053912617              87 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP3K7 C-terminal-like protein isoform X5 [Cuculus canorus].
ACCESSION   XP_053912617
VERSION     XP_053912617.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056642.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..87
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..87
                     /product="MAP3K7 C-terminal-like protein isoform X5"
                     /calculated_mol_wt=10221
     Region          <10..>86
                     /region_name="GumC"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; COG3206"
                     /db_xref="CDD:442439"
     CDS             1..87
                     /gene="MAP3K7CL"
                     /coded_by="XM_054056642.1:186..449"
                     /db_xref="GeneID:104064772"
ORIGIN      
        1 mqvykqhcki aeeyhevkke ialleerkke liarleqvek esmdaaqlak eyaelteenr
       61 tlklaqtqcv eqleklriqy qkrqgss
//
LOCUS       XP_053912618              87 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP3K7 C-terminal-like protein isoform X5 [Cuculus canorus].
ACCESSION   XP_053912618
VERSION     XP_053912618.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056643.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..87
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..87
                     /product="MAP3K7 C-terminal-like protein isoform X5"
                     /calculated_mol_wt=10221
     Region          <10..>86
                     /region_name="GumC"
                     /note="Exopolysaccharide export protein/domain GumC/Wzc1
                     [Cell wall/membrane/envelope biogenesis]; COG3206"
                     /db_xref="CDD:442439"
     CDS             1..87
                     /gene="MAP3K7CL"
                     /coded_by="XM_054056643.1:216..479"
                     /db_xref="GeneID:104064772"
ORIGIN      
        1 mqvykqhcki aeeyhevkke ialleerkke liarleqvek esmdaaqlak eyaelteenr
       61 tlklaqtqcv eqleklriqy qkrqgss
//
LOCUS       XP_053912619             330 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850968 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912619
VERSION     XP_053912619.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056644.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..330
                     /product="uncharacterized protein LOC128850968 isoform X1"
                     /calculated_mol_wt=35393
     CDS             1..330
                     /gene="LOC128850968"
                     /coded_by="XM_054056644.1:630..1622"
                     /db_xref="GeneID:128850968"
ORIGIN      
        1 mvrapweese llevlgrvgv sqegseplev lgrvgvpreg levlgrvgdp qegseslevl
       61 grvgvpqegl eplevlgrvg vpqeeseple vlgrvgvpqe glevlgrvgv pqegseplev
      121 lgrvgdpreg levlgrvgvp regsepfevl grvgvpwegl evlgrvgvpq eglevlgrvg
      181 vpqegseple vlgrvgvpqe glevlgrvgv pregsealev lgrvgvpreg levlgrvgvp
      241 revleplevl grvgvpregl etlrkgwsps rcweeleslg kgrspsrcwe eleslgkgwk
      301 cweeleplev lgrvgvpreg levlrrvral
//
LOCUS       XP_053912620             314 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850968 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912620
VERSION     XP_053912620.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056645.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..314
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..314
                     /product="uncharacterized protein LOC128850968 isoform X2"
                     /calculated_mol_wt=33649
     CDS             1..314
                     /gene="LOC128850968"
                     /coded_by="XM_054056645.1:630..1574"
                     /db_xref="GeneID:128850968"
ORIGIN      
        1 mvrapweese llevlgrvgv sqegseplev lgrvgvpreg levlgrvgdp qegseslevl
       61 grvgvpqegl eplevlgrvg vpqeeseple vlgrvgvpqe glevlgrvgv pqegseplev
      121 lgrvgdpreg levlgrvgvp regsepfevl grvgvpwegl evlgrvgvpq eglevlgrvg
      181 vpqegseple vlgrvgvpqe glevlgrvgv pregsealev lgrvgvpreg levlgrvgvp
      241 regletlrkg wspsrcweel eslgkgrsps rcweeleslg kgwkcweele plevlgrvgv
      301 preglevlrr vral
//
LOCUS       XP_053912621             121 aa            linear   VRT 09-MAR-2023
DEFINITION  anaphase-promoting complex subunit 15 [Cuculus canorus].
ACCESSION   XP_053912621
VERSION     XP_053912621.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056646.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..121
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..121
                     /product="anaphase-promoting complex subunit 15"
                     /calculated_mol_wt=13966
     Region          2..>62
                     /region_name="ANAPC15"
                     /note="Anaphase-promoting complex subunit 15; pfam15243"
                     /db_xref="CDD:464583"
     CDS             1..121
                     /gene="ANAPC15"
                     /coded_by="XM_054056646.1:105..470"
                     /db_xref="GeneID:104060257"
ORIGIN      
        1 mstlfpsllp rlteplwfnl drpcgdesdl qqqeqqhqaw lqsiaekdnn lvpigkpase
       61 hydeeeeedd eddedseeds eddediqdmd emndynespd dgdvnevdme gadqdqdqwm
      121 i
//
LOCUS       XP_053912623             477 aa            linear   VRT 09-MAR-2023
DEFINITION  bile acid receptor isoform X1 [Cuculus canorus].
ACCESSION   XP_053912623
VERSION     XP_053912623.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056648.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..477
                     /product="bile acid receptor isoform X1"
                     /calculated_mol_wt=54834
     Region          125..212
                     /region_name="NR_DBD_FXR"
                     /note="DNA-binding domain of Farnesoid X receptor (FXR)
                     family is composed of two C4-type zinc fingers; cd06962"
                     /db_xref="CDD:143520"
     Site            order(128,131,145,148,164,170,180,183)
                     /site_type="other"
                     /note="zinc binding site [ion binding]"
                     /db_xref="CDD:143520"
     Site            order(133..134,174..175,178)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:143520"
     Site            order(137..140,146..147,149,151,153..154,177..179,181,184,
                     198)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143520"
     Region          252..472
                     /region_name="NR_LBD_Fxr"
                     /note="The ligand binding domain of Farnesoid X receptor:a
                     member of the nuclear receptor superfamily of
                     ligand-activated transcription factors; cd06936"
                     /db_xref="CDD:132734"
     Site            order(270,289,292..293,295..296,299,333..334,336..337,340,
                     452,466)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:132734"
     Site            order(301,304,308,318..319,322,325..326,469,472)
                     /site_type="other"
                     /note="coactivator recognition site [polypeptide binding]"
                     /db_xref="CDD:132734"
     Site            order(380,399,406,410,433,436..437,440..441,443,446..447,
                     450..451)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:132734"
     CDS             1..477
                     /gene="NR1H4"
                     /coded_by="XM_054056648.1:161..1594"
                     /db_xref="GeneID:104068653"
ORIGIN      
        1 mgseinligh hqlatadgfs laegphlfgv lsepmsspvq eadvspytqy nsvpfpqvqp
       61 qipsspyysn lgfyppqhee wyspgmyelr ripsemlftr eteimdipaa kkprlshstg
      121 rvkgeelcvv cgdkasgyhy naltcegckg ffrrsitkna vykcknggnc emdmymrrkc
      181 qecrlrkckq mgmlaecmyt gllteiqcks krlrknvkqp pdqsvhedne ghdmkqvtst
      241 tkiyrekvef tpeqqnlldy imdsyskqqi pqevskkllh eefsaegnfl iltematshv
      301 qvlveftkkl pgfqtldhed qiallkgsav eamflrsaei fsrklptght vlleerirns
      361 gisdefitpm fnfyksigel kmtqeeyall taivilspdr qyikdresve rlqeplldil
      421 qkfckihhpd npqhfacllg rltelrtfnh hhaemlmswr vndhkftpll ceiwdvq
//
LOCUS       XP_053912624             477 aa            linear   VRT 09-MAR-2023
DEFINITION  bile acid receptor isoform X1 [Cuculus canorus].
ACCESSION   XP_053912624
VERSION     XP_053912624.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056649.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..477
                     /product="bile acid receptor isoform X1"
                     /calculated_mol_wt=54834
     Region          125..212
                     /region_name="NR_DBD_FXR"
                     /note="DNA-binding domain of Farnesoid X receptor (FXR)
                     family is composed of two C4-type zinc fingers; cd06962"
                     /db_xref="CDD:143520"
     Site            order(128,131,145,148,164,170,180,183)
                     /site_type="other"
                     /note="zinc binding site [ion binding]"
                     /db_xref="CDD:143520"
     Site            order(133..134,174..175,178)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:143520"
     Site            order(137..140,146..147,149,151,153..154,177..179,181,184,
                     198)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143520"
     Region          252..472
                     /region_name="NR_LBD_Fxr"
                     /note="The ligand binding domain of Farnesoid X receptor:a
                     member of the nuclear receptor superfamily of
                     ligand-activated transcription factors; cd06936"
                     /db_xref="CDD:132734"
     Site            order(270,289,292..293,295..296,299,333..334,336..337,340,
                     452,466)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:132734"
     Site            order(301,304,308,318..319,322,325..326,469,472)
                     /site_type="other"
                     /note="coactivator recognition site [polypeptide binding]"
                     /db_xref="CDD:132734"
     Site            order(380,399,406,410,433,436..437,440..441,443,446..447,
                     450..451)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:132734"
     CDS             1..477
                     /gene="NR1H4"
                     /coded_by="XM_054056649.1:121..1554"
                     /db_xref="GeneID:104068653"
ORIGIN      
        1 mgseinligh hqlatadgfs laegphlfgv lsepmsspvq eadvspytqy nsvpfpqvqp
       61 qipsspyysn lgfyppqhee wyspgmyelr ripsemlftr eteimdipaa kkprlshstg
      121 rvkgeelcvv cgdkasgyhy naltcegckg ffrrsitkna vykcknggnc emdmymrrkc
      181 qecrlrkckq mgmlaecmyt gllteiqcks krlrknvkqp pdqsvhedne ghdmkqvtst
      241 tkiyrekvef tpeqqnlldy imdsyskqqi pqevskkllh eefsaegnfl iltematshv
      301 qvlveftkkl pgfqtldhed qiallkgsav eamflrsaei fsrklptght vlleerirns
      361 gisdefitpm fnfyksigel kmtqeeyall taivilspdr qyikdresve rlqeplldil
      421 qkfckihhpd npqhfacllg rltelrtfnh hhaemlmswr vndhkftpll ceiwdvq
//
LOCUS       XP_053912625             477 aa            linear   VRT 09-MAR-2023
DEFINITION  bile acid receptor isoform X1 [Cuculus canorus].
ACCESSION   XP_053912625
VERSION     XP_053912625.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056650.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..477
                     /product="bile acid receptor isoform X1"
                     /calculated_mol_wt=54834
     Region          125..212
                     /region_name="NR_DBD_FXR"
                     /note="DNA-binding domain of Farnesoid X receptor (FXR)
                     family is composed of two C4-type zinc fingers; cd06962"
                     /db_xref="CDD:143520"
     Site            order(128,131,145,148,164,170,180,183)
                     /site_type="other"
                     /note="zinc binding site [ion binding]"
                     /db_xref="CDD:143520"
     Site            order(133..134,174..175,178)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:143520"
     Site            order(137..140,146..147,149,151,153..154,177..179,181,184,
                     198)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143520"
     Region          252..472
                     /region_name="NR_LBD_Fxr"
                     /note="The ligand binding domain of Farnesoid X receptor:a
                     member of the nuclear receptor superfamily of
                     ligand-activated transcription factors; cd06936"
                     /db_xref="CDD:132734"
     Site            order(270,289,292..293,295..296,299,333..334,336..337,340,
                     452,466)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:132734"
     Site            order(301,304,308,318..319,322,325..326,469,472)
                     /site_type="other"
                     /note="coactivator recognition site [polypeptide binding]"
                     /db_xref="CDD:132734"
     Site            order(380,399,406,410,433,436..437,440..441,443,446..447,
                     450..451)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:132734"
     CDS             1..477
                     /gene="NR1H4"
                     /coded_by="XM_054056650.1:78..1511"
                     /db_xref="GeneID:104068653"
ORIGIN      
        1 mgseinligh hqlatadgfs laegphlfgv lsepmsspvq eadvspytqy nsvpfpqvqp
       61 qipsspyysn lgfyppqhee wyspgmyelr ripsemlftr eteimdipaa kkprlshstg
      121 rvkgeelcvv cgdkasgyhy naltcegckg ffrrsitkna vykcknggnc emdmymrrkc
      181 qecrlrkckq mgmlaecmyt gllteiqcks krlrknvkqp pdqsvhedne ghdmkqvtst
      241 tkiyrekvef tpeqqnlldy imdsyskqqi pqevskkllh eefsaegnfl iltematshv
      301 qvlveftkkl pgfqtldhed qiallkgsav eamflrsaei fsrklptght vlleerirns
      361 gisdefitpm fnfyksigel kmtqeeyall taivilspdr qyikdresve rlqeplldil
      421 qkfckihhpd npqhfacllg rltelrtfnh hhaemlmswr vndhkftpll ceiwdvq
//
LOCUS       XP_053912626             477 aa            linear   VRT 09-MAR-2023
DEFINITION  bile acid receptor isoform X1 [Cuculus canorus].
ACCESSION   XP_053912626
VERSION     XP_053912626.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056651.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..477
                     /product="bile acid receptor isoform X1"
                     /calculated_mol_wt=54834
     Region          125..212
                     /region_name="NR_DBD_FXR"
                     /note="DNA-binding domain of Farnesoid X receptor (FXR)
                     family is composed of two C4-type zinc fingers; cd06962"
                     /db_xref="CDD:143520"
     Site            order(128,131,145,148,164,170,180,183)
                     /site_type="other"
                     /note="zinc binding site [ion binding]"
                     /db_xref="CDD:143520"
     Site            order(133..134,174..175,178)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:143520"
     Site            order(137..140,146..147,149,151,153..154,177..179,181,184,
                     198)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143520"
     Region          252..472
                     /region_name="NR_LBD_Fxr"
                     /note="The ligand binding domain of Farnesoid X receptor:a
                     member of the nuclear receptor superfamily of
                     ligand-activated transcription factors; cd06936"
                     /db_xref="CDD:132734"
     Site            order(270,289,292..293,295..296,299,333..334,336..337,340,
                     452,466)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:132734"
     Site            order(301,304,308,318..319,322,325..326,469,472)
                     /site_type="other"
                     /note="coactivator recognition site [polypeptide binding]"
                     /db_xref="CDD:132734"
     Site            order(380,399,406,410,433,436..437,440..441,443,446..447,
                     450..451)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:132734"
     CDS             1..477
                     /gene="NR1H4"
                     /coded_by="XM_054056651.1:78..1511"
                     /db_xref="GeneID:104068653"
ORIGIN      
        1 mgseinligh hqlatadgfs laegphlfgv lsepmsspvq eadvspytqy nsvpfpqvqp
       61 qipsspyysn lgfyppqhee wyspgmyelr ripsemlftr eteimdipaa kkprlshstg
      121 rvkgeelcvv cgdkasgyhy naltcegckg ffrrsitkna vykcknggnc emdmymrrkc
      181 qecrlrkckq mgmlaecmyt gllteiqcks krlrknvkqp pdqsvhedne ghdmkqvtst
      241 tkiyrekvef tpeqqnlldy imdsyskqqi pqevskkllh eefsaegnfl iltematshv
      301 qvlveftkkl pgfqtldhed qiallkgsav eamflrsaei fsrklptght vlleerirns
      361 gisdefitpm fnfyksigel kmtqeeyall taivilspdr qyikdresve rlqeplldil
      421 qkfckihhpd npqhfacllg rltelrtfnh hhaemlmswr vndhkftpll ceiwdvq
//
LOCUS       XP_009569852             473 aa            linear   VRT 09-MAR-2023
DEFINITION  bile acid receptor isoform X2 [Cuculus canorus].
ACCESSION   XP_009569852
VERSION     XP_009569852.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009571557.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009569852.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..473
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..473
                     /product="bile acid receptor isoform X2"
                     /calculated_mol_wt=54382
     Region          125..208
                     /region_name="NR_DBD_FXR"
                     /note="DNA-binding domain of Farnesoid X receptor (FXR)
                     family is composed of two C4-type zinc fingers; cd06962"
                     /db_xref="CDD:143520"
     Site            order(128,131,145,148,164,170,180,183)
                     /site_type="other"
                     /note="zinc binding site [ion binding]"
                     /db_xref="CDD:143520"
     Site            order(133..134,174..175,178)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:143520"
     Site            order(137..140,146..147,149,151,153..154,177..179,181,184,
                     198)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143520"
     Region          248..468
                     /region_name="NR_LBD_Fxr"
                     /note="The ligand binding domain of Farnesoid X receptor:a
                     member of the nuclear receptor superfamily of
                     ligand-activated transcription factors; cd06936"
                     /db_xref="CDD:132734"
     Site            order(266,285,288..289,291..292,295,329..330,332..333,336,
                     448,462)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:132734"
     Site            order(297,300,304,314..315,318,321..322,465,468)
                     /site_type="other"
                     /note="coactivator recognition site [polypeptide binding]"
                     /db_xref="CDD:132734"
     Site            order(376,395,402,406,429,432..433,436..437,439,442..443,
                     446..447)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:132734"
     CDS             1..473
                     /gene="NR1H4"
                     /coded_by="XM_009571557.2:161..1582"
                     /db_xref="GeneID:104068653"
ORIGIN      
        1 mgseinligh hqlatadgfs laegphlfgv lsepmsspvq eadvspytqy nsvpfpqvqp
       61 qipsspyysn lgfyppqhee wyspgmyelr ripsemlftr eteimdipaa kkprlshstg
      121 rvkgeelcvv cgdkasgyhy naltcegckg ffrrsitkna vykcknggnc emdmymrrkc
      181 qecrlrkckq mgmlaecllt eiqckskrlr knvkqppdqs vhedneghdm kqvtsttkiy
      241 rekveftpeq qnlldyimds yskqqipqev skkllheefs aegnflilte matshvqvlv
      301 eftkklpgfq tldhedqial lkgsaveamf lrsaeifsrk lptghtvlle erirnsgisd
      361 efitpmfnfy ksigelkmtq eeyalltaiv ilspdrqyik dresverlqe plldilqkfc
      421 kihhpdnpqh facllgrlte lrtfnhhhae mlmswrvndh kftpllceiw dvq
//
LOCUS       XP_053912627             443 aa            linear   VRT 09-MAR-2023
DEFINITION  bile acid receptor isoform X3 [Cuculus canorus].
ACCESSION   XP_053912627
VERSION     XP_053912627.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056652.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..443
                     /product="bile acid receptor isoform X3"
                     /calculated_mol_wt=51306
     Region          91..178
                     /region_name="NR_DBD_FXR"
                     /note="DNA-binding domain of Farnesoid X receptor (FXR)
                     family is composed of two C4-type zinc fingers; cd06962"
                     /db_xref="CDD:143520"
     Site            order(94,97,111,114,130,136,146,149)
                     /site_type="other"
                     /note="zinc binding site [ion binding]"
                     /db_xref="CDD:143520"
     Site            order(99..100,140..141,144)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:143520"
     Site            order(103..106,112..113,115,117,119..120,143..145,147,150,
                     164)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143520"
     Region          218..438
                     /region_name="NR_LBD_Fxr"
                     /note="The ligand binding domain of Farnesoid X receptor:a
                     member of the nuclear receptor superfamily of
                     ligand-activated transcription factors; cd06936"
                     /db_xref="CDD:132734"
     Site            order(236,255,258..259,261..262,265,299..300,302..303,306,
                     418,432)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:132734"
     Site            order(267,270,274,284..285,288,291..292,435,438)
                     /site_type="other"
                     /note="coactivator recognition site [polypeptide binding]"
                     /db_xref="CDD:132734"
     Site            order(346,365,372,376,399,402..403,406..407,409,412..413,
                     416..417)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:132734"
     CDS             1..443
                     /gene="NR1H4"
                     /coded_by="XM_054056652.1:174..1505"
                     /db_xref="GeneID:104068653"
ORIGIN      
        1 msspvqeadv spytqynsvp fpqvqpqips spyysnlgfy ppqheewysp gmyelrrips
       61 emlftretei mdipaakkpr lshstgrvkg eelcvvcgdk asgyhynalt cegckgffrr
      121 sitknavykc knggncemdm ymrrkcqecr lrkckqmgml aecmytgllt eiqckskrlr
      181 knvkqppdqs vhedneghdm kqvtsttkiy rekveftpeq qnlldyimds yskqqipqev
      241 skkllheefs aegnflilte matshvqvlv eftkklpgfq tldhedqial lkgsaveamf
      301 lrsaeifsrk lptghtvlle erirnsgisd efitpmfnfy ksigelkmtq eeyalltaiv
      361 ilspdrqyik dresverlqe plldilqkfc kihhpdnpqh facllgrlte lrtfnhhhae
      421 mlmswrvndh kftpllceiw dvq
//
LOCUS       XP_053912628             443 aa            linear   VRT 09-MAR-2023
DEFINITION  bile acid receptor isoform X3 [Cuculus canorus].
ACCESSION   XP_053912628
VERSION     XP_053912628.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056653.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..443
                     /product="bile acid receptor isoform X3"
                     /calculated_mol_wt=51306
     Region          91..178
                     /region_name="NR_DBD_FXR"
                     /note="DNA-binding domain of Farnesoid X receptor (FXR)
                     family is composed of two C4-type zinc fingers; cd06962"
                     /db_xref="CDD:143520"
     Site            order(94,97,111,114,130,136,146,149)
                     /site_type="other"
                     /note="zinc binding site [ion binding]"
                     /db_xref="CDD:143520"
     Site            order(99..100,140..141,144)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:143520"
     Site            order(103..106,112..113,115,117,119..120,143..145,147,150,
                     164)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143520"
     Region          218..438
                     /region_name="NR_LBD_Fxr"
                     /note="The ligand binding domain of Farnesoid X receptor:a
                     member of the nuclear receptor superfamily of
                     ligand-activated transcription factors; cd06936"
                     /db_xref="CDD:132734"
     Site            order(236,255,258..259,261..262,265,299..300,302..303,306,
                     418,432)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:132734"
     Site            order(267,270,274,284..285,288,291..292,435,438)
                     /site_type="other"
                     /note="coactivator recognition site [polypeptide binding]"
                     /db_xref="CDD:132734"
     Site            order(346,365,372,376,399,402..403,406..407,409,412..413,
                     416..417)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:132734"
     CDS             1..443
                     /gene="NR1H4"
                     /coded_by="XM_054056653.1:239..1570"
                     /db_xref="GeneID:104068653"
ORIGIN      
        1 msspvqeadv spytqynsvp fpqvqpqips spyysnlgfy ppqheewysp gmyelrrips
       61 emlftretei mdipaakkpr lshstgrvkg eelcvvcgdk asgyhynalt cegckgffrr
      121 sitknavykc knggncemdm ymrrkcqecr lrkckqmgml aecmytgllt eiqckskrlr
      181 knvkqppdqs vhedneghdm kqvtsttkiy rekveftpeq qnlldyimds yskqqipqev
      241 skkllheefs aegnflilte matshvqvlv eftkklpgfq tldhedqial lkgsaveamf
      301 lrsaeifsrk lptghtvlle erirnsgisd efitpmfnfy ksigelkmtq eeyalltaiv
      361 ilspdrqyik dresverlqe plldilqkfc kihhpdnpqh facllgrlte lrtfnhhhae
      421 mlmswrvndh kftpllceiw dvq
//
LOCUS       XP_053912629             443 aa            linear   VRT 09-MAR-2023
DEFINITION  bile acid receptor isoform X3 [Cuculus canorus].
ACCESSION   XP_053912629
VERSION     XP_053912629.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056654.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..443
                     /product="bile acid receptor isoform X3"
                     /calculated_mol_wt=51306
     Region          91..178
                     /region_name="NR_DBD_FXR"
                     /note="DNA-binding domain of Farnesoid X receptor (FXR)
                     family is composed of two C4-type zinc fingers; cd06962"
                     /db_xref="CDD:143520"
     Site            order(94,97,111,114,130,136,146,149)
                     /site_type="other"
                     /note="zinc binding site [ion binding]"
                     /db_xref="CDD:143520"
     Site            order(99..100,140..141,144)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:143520"
     Site            order(103..106,112..113,115,117,119..120,143..145,147,150,
                     164)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:143520"
     Region          218..438
                     /region_name="NR_LBD_Fxr"
                     /note="The ligand binding domain of Farnesoid X receptor:a
                     member of the nuclear receptor superfamily of
                     ligand-activated transcription factors; cd06936"
                     /db_xref="CDD:132734"
     Site            order(236,255,258..259,261..262,265,299..300,302..303,306,
                     418,432)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:132734"
     Site            order(267,270,274,284..285,288,291..292,435,438)
                     /site_type="other"
                     /note="coactivator recognition site [polypeptide binding]"
                     /db_xref="CDD:132734"
     Site            order(346,365,372,376,399,402..403,406..407,409,412..413,
                     416..417)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:132734"
     CDS             1..443
                     /gene="NR1H4"
                     /coded_by="XM_054056654.1:39..1370"
                     /db_xref="GeneID:104068653"
ORIGIN      
        1 msspvqeadv spytqynsvp fpqvqpqips spyysnlgfy ppqheewysp gmyelrrips
       61 emlftretei mdipaakkpr lshstgrvkg eelcvvcgdk asgyhynalt cegckgffrr
      121 sitknavykc knggncemdm ymrrkcqecr lrkckqmgml aecmytgllt eiqckskrlr
      181 knvkqppdqs vhedneghdm kqvtsttkiy rekveftpeq qnlldyimds yskqqipqev
      241 skkllheefs aegnflilte matshvqvlv eftkklpgfq tldhedqial lkgsaveamf
      301 lrsaeifsrk lptghtvlle erirnsgisd efitpmfnfy ksigelkmtq eeyalltaiv
      361 ilspdrqyik dresverlqe plldilqkfc kihhpdnpqh facllgrlte lrtfnhhhae
      421 mlmswrvndh kftpllceiw dvq
//
LOCUS       XP_053912630            2334 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912630
VERSION     XP_053912630.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056655.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2334
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2334
                     /product="C2 domain-containing protein 3 isoform X1"
                     /calculated_mol_wt=257750
     Region          1162..1304
                     /region_name="C2_C2cd3"
                     /note="C2 domain found in C2 calcium-dependent domain
                     containing 3 (C2cd3) proteins; cd08683"
                     /db_xref="CDD:176065"
     Region          <1638..1706
                     /region_name="C2"
                     /note="C2 domain; cd00030"
                     /db_xref="CDD:175973"
     CDS             1..2334
                     /gene="C2CD3"
                     /coded_by="XM_054056655.1:45..7049"
                     /db_xref="GeneID:104064208"
ORIGIN      
        1 mrggmrrpra aggsrrraga gdavgrgslp plvegpprcl lrcavsrlvw tgprppgaal
       61 vrlrwwgess egtvlqpgpg aaaryavrcg prrfaaylad mgvlvlevmt kpdhlpigrv
      121 qitglsqlsp shpingvfpi vsptsdklge lqvslvlepl pelydtsnti qttdasldia
      181 paqestkpwl larsqqsrqt rvtiadresm dncratspsr akdhllfqen tenikdaisa
      241 shhrlilpde hlkmspsnhq vsfptstdpe apagtntrvl slhnpatkdl lsalldqgnk
      301 lrdamvvsam ksspdmeiel nevppfidrd dfkapakspk glnsnflptp edpnlfapev
      361 pgqpdsdera iqlllgsadl splhfwdhtg slldslslgs evydselndp rydqsllesl
      421 fytapksdss lsdflsdddv nsskkvtkte tlkkanprns qkdsnaftqd qkvteikpsg
      481 sparpfafpe dhkeqvhats lsadrlallg qihlarviie slkippdiiq itprkkglmg
      541 kpprplsvnk ctffvdyhfp vgtskdakgq vsiateitri asskitddav kfqqrfvfpv
      601 rfgemmiehw wssdlafkiy mrkntqkkpv avgsaalqlr kvvqselltv sceipvekeg
      661 dqtqvgplkv slelaadnkd ftrtaarsam avqqvpahav rspqlefqep nrksmdaesl
      721 rclklnnced sqktgaasin vmqppqalpt svahnlmtqi taseedglll hvllmvpdgk
      781 dfvagdcgih sscnvylnck lfsteeatrs aviwgttqpa fnfsqvmpfs ltsrhlerlk
      841 nnvmiieawn kmgspghdkl lglvklplhq fyisfkdpki shlllqaqyp vvavdsympv
      901 idvftgtrsg slrvvlamgs adqivalqrl kneegmvppi tqrpfhslds ppvkptmqle
      961 eegedlmehv feihvesvkg lmplqstvwg eadcyvqyyf pvqeagcgal pgtklhedgi
     1021 vlklfrtatt lcipdpvfnd ehhhsllvpa evpvqrllvs afmapggtgg giqfevwcry
     1081 yypnvrdqmv akgtlplsrl camvtmqhre eigiqtfnlp lvprtnssee fhlrssglld
     1141 vsvryqrsmk raagitaqtv slsvqvhraa glqaaarava qknpsvqyya gvgvnayvsv
     1201 hlsflpqaer rctravartf cpefehrief pcnliiqkss geasslgell qsadivfsiy
     1261 hqstksatdt paartsrdyl lgtvtiptrd llrrrsgisg wypvtlsedl mpshctnvmq
     1321 aivgglelsv tfahqddrer vleaakvlgw nceenyedsm ddsdeweqsa spatvtistp
     1381 rlwlpvhcvl lagqshlnks tycylrykly nqeamwtslr rpklsddvkn vtvnfkkpnk
     1441 vtlrrsqgll wffreemlei qvwwaygked dverpldtdr ligsayvdlg alaersrktl
     1501 svsgvyplfr cnaanlagaa vrvhiafsat paalpsrlpc adeysnsede stekapevsq
     1561 evsesqsqkl dtvsseivng kpqeedimfl entfavnilv eramhlslkg splterevta
     1621 psscvsfava gadgpiitpv ientdspvwd fqqqarlske llldpqqtlv fkvwhkaeie
     1681 rvigfasvdl spllsgfqlv cgwynimdfs gqcrgqikva vsplqninnl keerqarirt
     1741 qppgssgkas fstfpsnats fskqmlntvl keasvhtrer pvstkinppg thtprheehi
     1801 qnvrrfhesl qqaegnahra akmdslslss rasllsalrk nlseldevqr yfsqkltrsf
     1861 pdftygntsk pspeeqendh ggsmsrevda ngchllerss qlmsqvssli sdlqtitkns
     1921 kesshvhqds srelgathvp rqkdeegrte vcqgqlelds psvcsdaqqp cssgrsvfer
     1981 hmlhelleqa vpgdehpspt gciregeggf alqprseeey eediieprtl nevttitdkt
     2041 spwssvlsem eqpidlrped qrsvdidcfq rgdsrrcstl ssilqgdnds mltalspclr
     2101 lcadegspwp vtegfkslns gtetagkelf qrshlselrq aasapiengn cdrdralnmk
     2161 qveqmvefca astellafpg dvgltnpktt ereeeednev vdedcqdlee ngsndicves
     2221 lsaqaglegn gesfshdspk dpleeleksv kprsvlsdpv vvpnfflppq qmeasmrlls
     2281 isagpstalk sgngavlggi pyrrsnrpwp tadlseeetk risrifsaql skke
//
LOCUS       XP_053912632            2334 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912632
VERSION     XP_053912632.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056657.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2334
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2334
                     /product="C2 domain-containing protein 3 isoform X1"
                     /calculated_mol_wt=257750
     Region          1162..1304
                     /region_name="C2_C2cd3"
                     /note="C2 domain found in C2 calcium-dependent domain
                     containing 3 (C2cd3) proteins; cd08683"
                     /db_xref="CDD:176065"
     Region          <1638..1706
                     /region_name="C2"
                     /note="C2 domain; cd00030"
                     /db_xref="CDD:175973"
     CDS             1..2334
                     /gene="C2CD3"
                     /coded_by="XM_054056657.1:45..7049"
                     /db_xref="GeneID:104064208"
ORIGIN      
        1 mrggmrrpra aggsrrraga gdavgrgslp plvegpprcl lrcavsrlvw tgprppgaal
       61 vrlrwwgess egtvlqpgpg aaaryavrcg prrfaaylad mgvlvlevmt kpdhlpigrv
      121 qitglsqlsp shpingvfpi vsptsdklge lqvslvlepl pelydtsnti qttdasldia
      181 paqestkpwl larsqqsrqt rvtiadresm dncratspsr akdhllfqen tenikdaisa
      241 shhrlilpde hlkmspsnhq vsfptstdpe apagtntrvl slhnpatkdl lsalldqgnk
      301 lrdamvvsam ksspdmeiel nevppfidrd dfkapakspk glnsnflptp edpnlfapev
      361 pgqpdsdera iqlllgsadl splhfwdhtg slldslslgs evydselndp rydqsllesl
      421 fytapksdss lsdflsdddv nsskkvtkte tlkkanprns qkdsnaftqd qkvteikpsg
      481 sparpfafpe dhkeqvhats lsadrlallg qihlarviie slkippdiiq itprkkglmg
      541 kpprplsvnk ctffvdyhfp vgtskdakgq vsiateitri asskitddav kfqqrfvfpv
      601 rfgemmiehw wssdlafkiy mrkntqkkpv avgsaalqlr kvvqselltv sceipvekeg
      661 dqtqvgplkv slelaadnkd ftrtaarsam avqqvpahav rspqlefqep nrksmdaesl
      721 rclklnnced sqktgaasin vmqppqalpt svahnlmtqi taseedglll hvllmvpdgk
      781 dfvagdcgih sscnvylnck lfsteeatrs aviwgttqpa fnfsqvmpfs ltsrhlerlk
      841 nnvmiieawn kmgspghdkl lglvklplhq fyisfkdpki shlllqaqyp vvavdsympv
      901 idvftgtrsg slrvvlamgs adqivalqrl kneegmvppi tqrpfhslds ppvkptmqle
      961 eegedlmehv feihvesvkg lmplqstvwg eadcyvqyyf pvqeagcgal pgtklhedgi
     1021 vlklfrtatt lcipdpvfnd ehhhsllvpa evpvqrllvs afmapggtgg giqfevwcry
     1081 yypnvrdqmv akgtlplsrl camvtmqhre eigiqtfnlp lvprtnssee fhlrssglld
     1141 vsvryqrsmk raagitaqtv slsvqvhraa glqaaarava qknpsvqyya gvgvnayvsv
     1201 hlsflpqaer rctravartf cpefehrief pcnliiqkss geasslgell qsadivfsiy
     1261 hqstksatdt paartsrdyl lgtvtiptrd llrrrsgisg wypvtlsedl mpshctnvmq
     1321 aivgglelsv tfahqddrer vleaakvlgw nceenyedsm ddsdeweqsa spatvtistp
     1381 rlwlpvhcvl lagqshlnks tycylrykly nqeamwtslr rpklsddvkn vtvnfkkpnk
     1441 vtlrrsqgll wffreemlei qvwwaygked dverpldtdr ligsayvdlg alaersrktl
     1501 svsgvyplfr cnaanlagaa vrvhiafsat paalpsrlpc adeysnsede stekapevsq
     1561 evsesqsqkl dtvsseivng kpqeedimfl entfavnilv eramhlslkg splterevta
     1621 psscvsfava gadgpiitpv ientdspvwd fqqqarlske llldpqqtlv fkvwhkaeie
     1681 rvigfasvdl spllsgfqlv cgwynimdfs gqcrgqikva vsplqninnl keerqarirt
     1741 qppgssgkas fstfpsnats fskqmlntvl keasvhtrer pvstkinppg thtprheehi
     1801 qnvrrfhesl qqaegnahra akmdslslss rasllsalrk nlseldevqr yfsqkltrsf
     1861 pdftygntsk pspeeqendh ggsmsrevda ngchllerss qlmsqvssli sdlqtitkns
     1921 kesshvhqds srelgathvp rqkdeegrte vcqgqlelds psvcsdaqqp cssgrsvfer
     1981 hmlhelleqa vpgdehpspt gciregeggf alqprseeey eediieprtl nevttitdkt
     2041 spwssvlsem eqpidlrped qrsvdidcfq rgdsrrcstl ssilqgdnds mltalspclr
     2101 lcadegspwp vtegfkslns gtetagkelf qrshlselrq aasapiengn cdrdralnmk
     2161 qveqmvefca astellafpg dvgltnpktt ereeeednev vdedcqdlee ngsndicves
     2221 lsaqaglegn gesfshdspk dpleeleksv kprsvlsdpv vvpnfflppq qmeasmrlls
     2281 isagpstalk sgngavlggi pyrrsnrpwp tadlseeetk risrifsaql skke
//
LOCUS       XP_053912633            2333 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912633
VERSION     XP_053912633.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056658.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2333
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2333
                     /product="C2 domain-containing protein 3 isoform X2"
                     /calculated_mol_wt=257663
     Region          1161..1303
                     /region_name="C2_C2cd3"
                     /note="C2 domain found in C2 calcium-dependent domain
                     containing 3 (C2cd3) proteins; cd08683"
                     /db_xref="CDD:176065"
     Region          <1637..1705
                     /region_name="C2"
                     /note="C2 domain; cd00030"
                     /db_xref="CDD:175973"
     CDS             1..2333
                     /gene="C2CD3"
                     /coded_by="XM_054056658.1:45..7046"
                     /db_xref="GeneID:104064208"
ORIGIN      
        1 mrggmrrpra aggsrrraga gdavgrgslp plvegpprcl lrcavsrlvw tgprppgaal
       61 vrlrwwgess egtvlqpgpg aaaryavrcg prrfaaylad mgvlvlevmt kpdhlpigrv
      121 qitglsqlsp shpingvfpi vsptsdklge lqvslvlepl pelydtsnti qttdasldia
      181 paqestkpwl larsqqsrqt rvtiadresm dncratspra kdhllfqent enikdaisas
      241 hhrlilpdeh lkmspsnhqv sfptstdpea pagtntrvls lhnpatkdll salldqgnkl
      301 rdamvvsamk sspdmeieln evppfidrdd fkapakspkg lnsnflptpe dpnlfapevp
      361 gqpdsderai qlllgsadls plhfwdhtgs lldslslgse vydselndpr ydqslleslf
      421 ytapksdssl sdflsdddvn sskkvtktet lkkanprnsq kdsnaftqdq kvteikpsgs
      481 parpfafped hkeqvhatsl sadrlallgq ihlarviies lkippdiiqi tprkkglmgk
      541 pprplsvnkc tffvdyhfpv gtskdakgqv siateitria sskitddavk fqqrfvfpvr
      601 fgemmiehww ssdlafkiym rkntqkkpva vgsaalqlrk vvqselltvs ceipvekegd
      661 qtqvgplkvs lelaadnkdf trtaarsama vqqvpahavr spqlefqepn rksmdaeslr
      721 clklnnceds qktgaasinv mqppqalpts vahnlmtqit aseedglllh vllmvpdgkd
      781 fvagdcgihs scnvylnckl fsteeatrsa viwgttqpaf nfsqvmpfsl tsrhlerlkn
      841 nvmiieawnk mgspghdkll glvklplhqf yisfkdpkis hlllqaqypv vavdsympvi
      901 dvftgtrsgs lrvvlamgsa dqivalqrlk neegmvppit qrpfhsldsp pvkptmqlee
      961 egedlmehvf eihvesvkgl mplqstvwge adcyvqyyfp vqeagcgalp gtklhedgiv
     1021 lklfrtattl cipdpvfnde hhhsllvpae vpvqrllvsa fmapggtggg iqfevwcryy
     1081 ypnvrdqmva kgtlplsrlc amvtmqhree igiqtfnlpl vprtnsseef hlrssglldv
     1141 svryqrsmkr aagitaqtvs lsvqvhraag lqaaaravaq knpsvqyyag vgvnayvsvh
     1201 lsflpqaerr ctravartfc pefehriefp cnliiqkssg easslgellq sadivfsiyh
     1261 qstksatdtp aartsrdyll gtvtiptrdl lrrrsgisgw ypvtlsedlm pshctnvmqa
     1321 ivgglelsvt fahqddrerv leaakvlgwn ceenyedsmd dsdeweqsas patvtistpr
     1381 lwlpvhcvll agqshlnkst ycylryklyn qeamwtslrr pklsddvknv tvnfkkpnkv
     1441 tlrrsqgllw ffreemleiq vwwaygkedd verpldtdrl igsayvdlga laersrktls
     1501 vsgvyplfrc naanlagaav rvhiafsatp aalpsrlpca deysnsedes tekapevsqe
     1561 vsesqsqkld tvsseivngk pqeedimfle ntfavnilve ramhlslkgs plterevtap
     1621 sscvsfavag adgpiitpvi entdspvwdf qqqarlskel lldpqqtlvf kvwhkaeier
     1681 vigfasvdls pllsgfqlvc gwynimdfsg qcrgqikvav splqninnlk eerqarirtq
     1741 ppgssgkasf stfpsnatsf skqmlntvlk easvhtrerp vstkinppgt htprheehiq
     1801 nvrrfheslq qaegnahraa kmdslslssr asllsalrkn lseldevqry fsqkltrsfp
     1861 dftygntskp speeqendhg gsmsrevdan gchllerssq lmsqvsslis dlqtitknsk
     1921 esshvhqdss relgathvpr qkdeegrtev cqgqleldsp svcsdaqqpc ssgrsvferh
     1981 mlhelleqav pgdehpsptg ciregeggfa lqprseeeye ediieprtln evttitdkts
     2041 pwssvlseme qpidlrpedq rsvdidcfqr gdsrrcstls silqgdndsm ltalspclrl
     2101 cadegspwpv tegfkslnsg tetagkelfq rshlselrqa asapiengnc drdralnmkq
     2161 veqmvefcaa stellafpgd vgltnpktte reeeednevv dedcqdleen gsndicvesl
     2221 saqaglegng esfshdspkd pleeleksvk prsvlsdpvv vpnfflppqq measmrllsi
     2281 sagpstalks gngavlggip yrrsnrpwpt adlseeetkr isrifsaqls kke
//
LOCUS       XP_053912634            2333 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912634
VERSION     XP_053912634.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056659.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2333
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2333
                     /product="C2 domain-containing protein 3 isoform X3"
                     /calculated_mol_wt=257622
     Region          1161..1303
                     /region_name="C2_C2cd3"
                     /note="C2 domain found in C2 calcium-dependent domain
                     containing 3 (C2cd3) proteins; cd08683"
                     /db_xref="CDD:176065"
     Region          <1637..1705
                     /region_name="C2"
                     /note="C2 domain; cd00030"
                     /db_xref="CDD:175973"
     CDS             1..2333
                     /gene="C2CD3"
                     /coded_by="XM_054056659.1:45..7046"
                     /db_xref="GeneID:104064208"
ORIGIN      
        1 mrggmrrpra aggsrrraga gdavgrgslp plvegpprcl lrcavsrlvw tgprppgaal
       61 vrlrwwgess egtvlqpgpg aaaryavrcg prrfaaylad mgvlvlevmt kpdhlpigrv
      121 qitglsqlsp shpingvfpi vsptsdklge lqvslvlepl pelydtsnti qttdasldia
      181 paqestkpwl larsqqsrqt rvtiadresm dncratspsr akdhllfqen tenikdaisa
      241 shhrlilpde hlkmspsnhq vsfptstdpe apagtntrvl slhnpatkdl lsalldqgnk
      301 lrdamvvsam ksspdmeiel nevppfidrd dfkapakspk glnsnflptp edpnlfapev
      361 pgqpdsdera iqlllgsadl splhfwdhtg slldslslgs evydselndp rydqsllesl
      421 fytapksdss lsdflsdddv nsskkvtkte tlkkanprns qkdsnaftqd qkvteikpsg
      481 sparpfafpe dhkeqvhats lsadrlallg qihlarviie slkippdiiq itprkkglmg
      541 kpprplsvnk ctffvdyhfp vgtskdakgq vsiateitri asskitddav kfqqrfvfpv
      601 rfgemmiehw wssdlafkiy mrkntqkkpv avgsaalqlr kvvqselltv sceipvekeg
      661 dqtqvgplkv slelaadnkd ftrtaarsam avqqvpahav rspqlefqep nrksmdaesl
      721 rclklnnced sqktgaasin vmqppqalpt svahnlmtqi taseedglll hvllmvpdgk
      781 dfvagdcgih sscnvylnck lfsteeatrs aviwgttqpa fnfsqvmpfs ltsrhlerlk
      841 nnvmiieawn kmgspghdkl lglvklplhq fyisfkdpki shlllqaqyp vvavdsympv
      901 idvftgtrsg slrvvlamgs adqivalqrl kneegmvppi tqrpfhslds ppvkptmlee
      961 egedlmehvf eihvesvkgl mplqstvwge adcyvqyyfp vqeagcgalp gtklhedgiv
     1021 lklfrtattl cipdpvfnde hhhsllvpae vpvqrllvsa fmapggtggg iqfevwcryy
     1081 ypnvrdqmva kgtlplsrlc amvtmqhree igiqtfnlpl vprtnsseef hlrssglldv
     1141 svryqrsmkr aagitaqtvs lsvqvhraag lqaaaravaq knpsvqyyag vgvnayvsvh
     1201 lsflpqaerr ctravartfc pefehriefp cnliiqkssg easslgellq sadivfsiyh
     1261 qstksatdtp aartsrdyll gtvtiptrdl lrrrsgisgw ypvtlsedlm pshctnvmqa
     1321 ivgglelsvt fahqddrerv leaakvlgwn ceenyedsmd dsdeweqsas patvtistpr
     1381 lwlpvhcvll agqshlnkst ycylryklyn qeamwtslrr pklsddvknv tvnfkkpnkv
     1441 tlrrsqgllw ffreemleiq vwwaygkedd verpldtdrl igsayvdlga laersrktls
     1501 vsgvyplfrc naanlagaav rvhiafsatp aalpsrlpca deysnsedes tekapevsqe
     1561 vsesqsqkld tvsseivngk pqeedimfle ntfavnilve ramhlslkgs plterevtap
     1621 sscvsfavag adgpiitpvi entdspvwdf qqqarlskel lldpqqtlvf kvwhkaeier
     1681 vigfasvdls pllsgfqlvc gwynimdfsg qcrgqikvav splqninnlk eerqarirtq
     1741 ppgssgkasf stfpsnatsf skqmlntvlk easvhtrerp vstkinppgt htprheehiq
     1801 nvrrfheslq qaegnahraa kmdslslssr asllsalrkn lseldevqry fsqkltrsfp
     1861 dftygntskp speeqendhg gsmsrevdan gchllerssq lmsqvsslis dlqtitknsk
     1921 esshvhqdss relgathvpr qkdeegrtev cqgqleldsp svcsdaqqpc ssgrsvferh
     1981 mlhelleqav pgdehpsptg ciregeggfa lqprseeeye ediieprtln evttitdkts
     2041 pwssvlseme qpidlrpedq rsvdidcfqr gdsrrcstls silqgdndsm ltalspclrl
     2101 cadegspwpv tegfkslnsg tetagkelfq rshlselrqa asapiengnc drdralnmkq
     2161 veqmvefcaa stellafpgd vgltnpktte reeeednevv dedcqdleen gsndicvesl
     2221 saqaglegng esfshdspkd pleeleksvk prsvlsdpvv vpnfflppqq measmrllsi
     2281 sagpstalks gngavlggip yrrsnrpwpt adlseeetkr isrifsaqls kke
//
LOCUS       XP_053912635            1950 aa            linear   VRT 09-MAR-2023
DEFINITION  C2 domain-containing protein 3 isoform X4 [Cuculus canorus].
ACCESSION   XP_053912635
VERSION     XP_053912635.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056660.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1950
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1950
                     /product="C2 domain-containing protein 3 isoform X4"
                     /calculated_mol_wt=215445
     Region          1162..1304
                     /region_name="C2_C2cd3"
                     /note="C2 domain found in C2 calcium-dependent domain
                     containing 3 (C2cd3) proteins; cd08683"
                     /db_xref="CDD:176065"
     Region          <1638..1706
                     /region_name="C2"
                     /note="C2 domain; cd00030"
                     /db_xref="CDD:175973"
     CDS             1..1950
                     /gene="C2CD3"
                     /coded_by="XM_054056660.1:45..5897"
                     /db_xref="GeneID:104064208"
ORIGIN      
        1 mrggmrrpra aggsrrraga gdavgrgslp plvegpprcl lrcavsrlvw tgprppgaal
       61 vrlrwwgess egtvlqpgpg aaaryavrcg prrfaaylad mgvlvlevmt kpdhlpigrv
      121 qitglsqlsp shpingvfpi vsptsdklge lqvslvlepl pelydtsnti qttdasldia
      181 paqestkpwl larsqqsrqt rvtiadresm dncratspsr akdhllfqen tenikdaisa
      241 shhrlilpde hlkmspsnhq vsfptstdpe apagtntrvl slhnpatkdl lsalldqgnk
      301 lrdamvvsam ksspdmeiel nevppfidrd dfkapakspk glnsnflptp edpnlfapev
      361 pgqpdsdera iqlllgsadl splhfwdhtg slldslslgs evydselndp rydqsllesl
      421 fytapksdss lsdflsdddv nsskkvtkte tlkkanprns qkdsnaftqd qkvteikpsg
      481 sparpfafpe dhkeqvhats lsadrlallg qihlarviie slkippdiiq itprkkglmg
      541 kpprplsvnk ctffvdyhfp vgtskdakgq vsiateitri asskitddav kfqqrfvfpv
      601 rfgemmiehw wssdlafkiy mrkntqkkpv avgsaalqlr kvvqselltv sceipvekeg
      661 dqtqvgplkv slelaadnkd ftrtaarsam avqqvpahav rspqlefqep nrksmdaesl
      721 rclklnnced sqktgaasin vmqppqalpt svahnlmtqi taseedglll hvllmvpdgk
      781 dfvagdcgih sscnvylnck lfsteeatrs aviwgttqpa fnfsqvmpfs ltsrhlerlk
      841 nnvmiieawn kmgspghdkl lglvklplhq fyisfkdpki shlllqaqyp vvavdsympv
      901 idvftgtrsg slrvvlamgs adqivalqrl kneegmvppi tqrpfhslds ppvkptmqle
      961 eegedlmehv feihvesvkg lmplqstvwg eadcyvqyyf pvqeagcgal pgtklhedgi
     1021 vlklfrtatt lcipdpvfnd ehhhsllvpa evpvqrllvs afmapggtgg giqfevwcry
     1081 yypnvrdqmv akgtlplsrl camvtmqhre eigiqtfnlp lvprtnssee fhlrssglld
     1141 vsvryqrsmk raagitaqtv slsvqvhraa glqaaarava qknpsvqyya gvgvnayvsv
     1201 hlsflpqaer rctravartf cpefehrief pcnliiqkss geasslgell qsadivfsiy
     1261 hqstksatdt paartsrdyl lgtvtiptrd llrrrsgisg wypvtlsedl mpshctnvmq
     1321 aivgglelsv tfahqddrer vleaakvlgw nceenyedsm ddsdeweqsa spatvtistp
     1381 rlwlpvhcvl lagqshlnks tycylrykly nqeamwtslr rpklsddvkn vtvnfkkpnk
     1441 vtlrrsqgll wffreemlei qvwwaygked dverpldtdr ligsayvdlg alaersrktl
     1501 svsgvyplfr cnaanlagaa vrvhiafsat paalpsrlpc adeysnsede stekapevsq
     1561 evsesqsqkl dtvsseivng kpqeedimfl entfavnilv eramhlslkg splterevta
     1621 psscvsfava gadgpiitpv ientdspvwd fqqqarlske llldpqqtlv fkvwhkaeie
     1681 rvigfasvdl spllsgfqlv cgwynimdfs gqcrgqikva vsplqninnl keerqarirt
     1741 qppgssgkas fstfpsnats fskqmlntvl keasvhtrer pvstkinppg thtprheehi
     1801 qnvrrfhesl qqaegnahra akmdslslss rasllsalrk nlseldevqr yfsqkltrsf
     1861 pdftygntsk pspeeqendh ggsmsrevda ngchllerss qlmsqvssli sdasvqlifp
     1921 ivsavghrmt svtrmeygtt vketmslctp
//
LOCUS       XP_009564699             392 aa            linear   VRT 09-MAR-2023
DEFINITION  proteasomal ATPase-associated factor 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009564699
VERSION     XP_009564699.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566404.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564699.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..392
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..392
                     /product="proteasomal ATPase-associated factor 1 isoform
                     X1"
                     /calculated_mol_wt=42167
     Region          <91..391
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          95..132
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          138..174
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          179..215
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          231..278
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          283..317
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          325..358
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          365..387
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..392
                     /gene="PAAF1"
                     /coded_by="XM_009566404.2:54..1232"
                     /db_xref="GeneID:104064111"
ORIGIN      
        1 maatlriqsd wsqalrrdeg eawlscrspg kptlygsltr rglstegvpd iaasegfvvg
       61 evtkksivis cphenvstkf lapyttfsri hqksitcldi ssggglgvst stdgtmkiwq
      121 aangeirrll eghvydvncc rffpsglvvl sggmdaqlki wsaedascvv tfkghkggil
      181 dtaivdrgrn vlscsrdgta rlwdcgksac lgviadcgsp vngiavgtad nslnlgmpee
      241 apsereigte gkilllared kklqgvglqs rqlvflfdgs dafncctfls styilagtqd
      301 gniyqldvrn tnapiqvvhr sgapvlsllp yrdgfaasqg dgtcfviqqd ldyvldltea
      361 dcdpvykvas wekqiytccr dgivrryhla dl
//
LOCUS       XP_053912636             277 aa            linear   VRT 09-MAR-2023
DEFINITION  proteasomal ATPase-associated factor 1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912636
VERSION     XP_053912636.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056661.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..277
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..277
                     /product="proteasomal ATPase-associated factor 1 isoform
                     X2"
                     /calculated_mol_wt=29950
     Region          <2..276
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          23..59
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          64..100
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          116..163
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          168..202
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          210..243
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          250..272
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..277
                     /gene="PAAF1"
                     /coded_by="XM_054056661.1:782..1615"
                     /db_xref="GeneID:104064111"
ORIGIN      
        1 mkiwqaange irrlleghvy dvnccrffps glvvlsggmd aqlkiwsaed ascvvtfkgh
       61 kggildtaiv drgrnvlscs rdgtarlwdc gksaclgvia dcgspvngia vgtadnslnl
      121 gmpeeapser eigtegkill laredkklqg vglqsrqlvf lfdgsdafnc ctflsstyil
      181 agtqdgniyq ldvrntnapi qvvhrsgapv lsllpyrdgf aasqgdgtcf viqqdldyvl
      241 dlteadcdpv ykvaswekqi ytccrdgivr ryhladl
//
LOCUS       XP_009564698             316 aa            linear   VRT 09-MAR-2023
DEFINITION  dnaJ homolog subfamily B member 13 isoform X1 [Cuculus canorus].
ACCESSION   XP_009564698
VERSION     XP_009564698.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566403.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564698.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..316
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..316
                     /product="dnaJ homolog subfamily B member 13 isoform X1"
                     /calculated_mol_wt=35456
     Region          4..305
                     /region_name="DnaJ_bact"
                     /note="chaperone protein DnaJ; TIGR02349"
                     /db_xref="CDD:274090"
     CDS             1..316
                     /gene="DNAJB13"
                     /coded_by="XM_009566403.2:138..1088"
                     /db_xref="GeneID:104064109"
ORIGIN      
        1 mgqdyyavlg lrrgatgadi aqayrklalk nhplkckepw apkrfrqlae aydvlsdpmk
       61 kgiydkfgee glkggiplef gsdnpwtvgy vfhnnpdkvf keffggdnpf aeffaedgse
      121 ltlpfgglrg rgmvkqdppv vrdlylsled lfygctkkik isrrvmnedg qtstirdkil
      181 tidvqpgwkq gtritfekeg dqgpnvipad itfvvqeklh prfkrvddnl ihvttiplgk
      241 aligctvdvr tldgrllnip indivdpryc kvvpgegmpl lqdpqrkgdl liyfnicfpk
      301 kltpekkkll ksalls
//
LOCUS       XP_053912637             290 aa            linear   VRT 09-MAR-2023
DEFINITION  dnaJ homolog subfamily B member 13 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912637
VERSION     XP_053912637.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056662.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..290
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..290
                     /product="dnaJ homolog subfamily B member 13 isoform X2"
                     /calculated_mol_wt=32369
     Region          4..260
                     /region_name="DnaJ_bact"
                     /note="chaperone protein DnaJ; TIGR02349"
                     /db_xref="CDD:274090"
     CDS             1..290
                     /gene="DNAJB13"
                     /coded_by="XM_054056662.1:138..1010"
                     /db_xref="GeneID:104064109"
ORIGIN      
        1 mgqdyyavlg lrrgatgadi aqayrklalk nhplkckepw apkrfrqlae aydvlsdpmk
       61 kgiydkfgee glkggiplef gsdnpwtvgy vfhnnpdkvf keffggdnpf aeffaedgse
      121 ltlpfgglrg rgmvkqdppv vrdlylsled lfygctkkik isrrvmnedg qtstirdkil
      181 tidvqpgwkq gtritfekeg dqgpnvipad itfvvqeklh prfkrvddnl ihvttiplgk
      241 aligctvdvr tldgrllnip indivetlnp nppcngearl lhnksqpadk
//
LOCUS       XP_053912638             283 aa            linear   VRT 09-MAR-2023
DEFINITION  dnaJ homolog subfamily B member 13 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912638
VERSION     XP_053912638.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056663.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..283
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..283
                     /product="dnaJ homolog subfamily B member 13 isoform X3"
                     /calculated_mol_wt=31706
     Region          4..260
                     /region_name="DnaJ_bact"
                     /note="chaperone protein DnaJ; TIGR02349"
                     /db_xref="CDD:274090"
     CDS             1..283
                     /gene="DNAJB13"
                     /coded_by="XM_054056663.1:138..989"
                     /db_xref="GeneID:104064109"
ORIGIN      
        1 mgqdyyavlg lrrgatgadi aqayrklalk nhplkckepw apkrfrqlae aydvlsdpmk
       61 kgiydkfgee glkggiplef gsdnpwtvgy vfhnnpdkvf keffggdnpf aeffaedgse
      121 ltlpfgglrg rgmvkqdppv vrdlylsled lfygctkkik isrrvmnedg qtstirdkil
      181 tidvqpgwkq gtritfekeg dqgpnvipad itfvvqeklh prfkrvddnl ihvttiplgk
      241 aligctvdvr tldgrllnip indiveryai tlqssdlflc pqp
//
LOCUS       XP_053912640             277 aa            linear   VRT 09-MAR-2023
DEFINITION  dnaJ homolog subfamily B member 13 isoform X4 [Cuculus canorus].
ACCESSION   XP_053912640
VERSION     XP_053912640.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056665.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..277
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..277
                     /product="dnaJ homolog subfamily B member 13 isoform X4"
                     /calculated_mol_wt=30813
     Region          4..260
                     /region_name="DnaJ_bact"
                     /note="chaperone protein DnaJ; TIGR02349"
                     /db_xref="CDD:274090"
     CDS             1..277
                     /gene="DNAJB13"
                     /coded_by="XM_054056665.1:138..971"
                     /db_xref="GeneID:104064109"
ORIGIN      
        1 mgqdyyavlg lrrgatgadi aqayrklalk nhplkckepw apkrfrqlae aydvlsdpmk
       61 kgiydkfgee glkggiplef gsdnpwtvgy vfhnnpdkvf keffggdnpf aeffaedgse
      121 ltlpfgglrg rgmvkqdppv vrdlylsled lfygctkkik isrrvmnedg qtstirdkil
      181 tidvqpgwkq gtritfekeg dqgpnvipad itfvvqeklh prfkrvddnl ihvttiplgk
      241 aligctvdvr tldgrllnip indivdksla lpstsva
//
LOCUS       XP_053912641             304 aa            linear   VRT 09-MAR-2023
DEFINITION  mitochondrial uncoupling protein 3 [Cuculus canorus].
ACCESSION   XP_053912641
VERSION     XP_053912641.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056666.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..304
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..304
                     /product="mitochondrial uncoupling protein 3"
                     /calculated_mol_wt=32657
     Region          10..110
                     /region_name="Mito_carr"
                     /note="Mitochondrial carrier protein; pfam00153"
                     /db_xref="CDD:395101"
     Region          115..207
                     /region_name="Mito_carr"
                     /note="Mitochondrial carrier protein; pfam00153"
                     /db_xref="CDD:395101"
     Region          212..300
                     /region_name="Mito_carr"
                     /note="Mitochondrial carrier protein; pfam00153"
                     /db_xref="CDD:395101"
     CDS             1..304
                     /gene="LOC104064108"
                     /coded_by="XM_054056666.1:143..1057"
                     /db_xref="GeneID:104064108"
ORIGIN      
        1 mvglkppevp pttavkfvsa gmaaciadlc tfpldtakvr lqiqgevrip rsvntteyrg
       61 vlgtlstmvk megprslysg lvaglqrqms fasiriglyd svkqlytpkg aestglaarv
      121 lagcttgava vtcaqptdvv kvrfqangal pdsirqysgt vdayrtiake egirglwrgt
      181 lpniarnaii ncgelvtydl ikdallrtql mtdnvpchfm aafgagfcat vvaspvdvvk
      241 trymnaspgq yrnvlsclla llmqdglagl ykgfvpsflr lgswnvvmfi syeqlqralt
      301 qars
//
LOCUS       XP_009564697             304 aa            linear   VRT 09-MAR-2023
DEFINITION  mitochondrial uncoupling protein 3 [Cuculus canorus].
ACCESSION   XP_009564697
VERSION     XP_009564697.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566402.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564697.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..304
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..304
                     /product="mitochondrial uncoupling protein 3"
                     /calculated_mol_wt=32657
     Region          10..110
                     /region_name="Mito_carr"
                     /note="Mitochondrial carrier protein; pfam00153"
                     /db_xref="CDD:395101"
     Region          115..207
                     /region_name="Mito_carr"
                     /note="Mitochondrial carrier protein; pfam00153"
                     /db_xref="CDD:395101"
     Region          212..300
                     /region_name="Mito_carr"
                     /note="Mitochondrial carrier protein; pfam00153"
                     /db_xref="CDD:395101"
     CDS             1..304
                     /gene="LOC104064108"
                     /coded_by="XM_009566402.2:14..928"
                     /db_xref="GeneID:104064108"
ORIGIN      
        1 mvglkppevp pttavkfvsa gmaaciadlc tfpldtakvr lqiqgevrip rsvntteyrg
       61 vlgtlstmvk megprslysg lvaglqrqms fasiriglyd svkqlytpkg aestglaarv
      121 lagcttgava vtcaqptdvv kvrfqangal pdsirqysgt vdayrtiake egirglwrgt
      181 lpniarnaii ncgelvtydl ikdallrtql mtdnvpchfm aafgagfcat vvaspvdvvk
      241 trymnaspgq yrnvlsclla llmqdglagl ykgfvpsflr lgswnvvmfi syeqlqralt
      301 qars
//
LOCUS       XP_053912642             124 aa            linear   VRT 09-MAR-2023
DEFINITION  cytochrome c oxidase assembly factor 4 homolog, mitochondrial
            isoform X1 [Cuculus canorus].
ACCESSION   XP_053912642
VERSION     XP_053912642.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056667.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..124
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..124
                     /product="cytochrome c oxidase assembly factor 4 homolog,
                     mitochondrial isoform X1"
                     /calculated_mol_wt=13357
     CDS             1..124
                     /gene="LOC128850969"
                     /coded_by="XM_054056667.1:1..375"
                     /db_xref="GeneID:128850969"
ORIGIN      
        1 msasseprpa ppgkpdppal kgprrapssa merpgharsr plleedeege dpvdamisrt
       61 gcmaqhrelq ecmaaqqdwr hcqpqvrafg ecmarrqrae glrqaagshq asssqqghps
      121 ptgn
//
LOCUS       XP_053912643             100 aa            linear   VRT 09-MAR-2023
DEFINITION  cytochrome c oxidase assembly factor 4 homolog, mitochondrial
            isoform X2 [Cuculus canorus].
ACCESSION   XP_053912643
VERSION     XP_053912643.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056668.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..100
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..100
                     /product="cytochrome c oxidase assembly factor 4 homolog,
                     mitochondrial isoform X2"
                     /calculated_mol_wt=10966
     CDS             1..100
                     /gene="LOC128850969"
                     /coded_by="XM_054056668.1:73..375"
                     /db_xref="GeneID:128850969"
ORIGIN      
        1 mkpssamerp gharsrplle edeegedpvd amisrtgcma qhrelqecma aqqdwrhcqp
       61 qvrafgecma rrqraeglrq aagshqasss qqghpsptgn
//
LOCUS       XP_053912644              94 aa            linear   VRT 09-MAR-2023
DEFINITION  cytochrome c oxidase assembly factor 4 homolog, mitochondrial
            isoform X3 [Cuculus canorus].
ACCESSION   XP_053912644
VERSION     XP_053912644.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056669.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..94
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..94
                     /product="cytochrome c oxidase assembly factor 4 homolog,
                     mitochondrial isoform X3"
                     /calculated_mol_wt=10364
     CDS             1..94
                     /gene="LOC128850969"
                     /coded_by="XM_054056669.1:145..429"
                     /db_xref="GeneID:128850969"
ORIGIN      
        1 merpgharsr plleedeege dpvdamisrt gcmaqhrelq ecmaaqqdwr hcqpqvrafg
       61 ecmarrqrae glrqaagshq asssqqghps ptgn
//
LOCUS       XP_053912645             294 aa            linear   VRT 09-MAR-2023
DEFINITION  neurotrophin-3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912645
VERSION     XP_053912645.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056670.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..294
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..294
                     /product="neurotrophin-3 isoform X1"
                     /calculated_mol_wt=33601
     Region          57..170
                     /region_name="NTF3_N"
                     /note="Neutrophin-3 N-terminus; pfam19338"
                     /db_xref="CDD:437170"
     Region          181..292
                     /region_name="NGF"
                     /note="Nerve growth factor family; pfam00243"
                     /db_xref="CDD:459728"
     CDS             1..294
                     /gene="NTF3"
                     /coded_by="XM_054056670.1:35..919"
                     /db_xref="GeneID:104066616"
ORIGIN      
        1 mpdckqhpgh wdstrlklqt aacsataqhe ilqvnkvmsi lfyviflayl rgiqstnmdq
       61 rtlpedsins liikliqadi lknklskqmv dikenyqnta qkadtqqdmd addnvksdfq
      121 pvvsvdtdll rqqrrynspr vllsdntple ppplylmedy ignsvmvnrt srrkryaehk
      181 shrgeysvcd seslwvtdks saidirghqv tvlgeiktgn spvkqyfyet rckeakpvkn
      241 gcrgiddkhw nsqcktsqty vraltsennk lvgwrwirid tscvcalsrk igrt
//
LOCUS       XP_009567537             270 aa            linear   VRT 09-MAR-2023
DEFINITION  neurotrophin-3 isoform X2 [Cuculus canorus].
ACCESSION   XP_009567537
VERSION     XP_009567537.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009569242.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..270
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..270
                     /product="neurotrophin-3 isoform X2"
                     /calculated_mol_wt=30901
     Region          33..146
                     /region_name="NTF3_N"
                     /note="Neutrophin-3 N-terminus; pfam19338"
                     /db_xref="CDD:437170"
     Region          157..268
                     /region_name="NGF"
                     /note="Nerve growth factor family; pfam00243"
                     /db_xref="CDD:459728"
     CDS             1..270
                     /gene="NTF3"
                     /coded_by="XM_009569242.2:152..964"
                     /db_xref="GeneID:104066616"
ORIGIN      
        1 mvtpttilqv nkvmsilfyv iflaylrgiq stnmdqrtlp edsinsliik liqadilknk
       61 lskqmvdike nyqntaqkad tqqdmdaddn vksdfqpvvs vdtdllrqqr rynsprvlls
      121 dntplepppl ylmedyigns vmvnrtsrrk ryaehkshrg eysvcdsesl wvtdkssaid
      181 irghqvtvlg eiktgnspvk qyfyetrcke akpvkngcrg iddkhwnsqc ktsqtyvral
      241 tsennklvgw rwiridtscv calsrkigrt
//
LOCUS       XP_009554936             296 aa            linear   VRT 09-MAR-2023
DEFINITION  GRB2-related adapter protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_009554936
VERSION     XP_009554936.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556641.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..296
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..296
                     /product="GRB2-related adapter protein 2 isoform X1"
                     /calculated_mol_wt=33785
     Region          2..52
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(7,9,12,16,33..34,47,49..50)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212880"
     Region          54..147
                     /region_name="SH2_Grb2_like"
                     /note="Src homology 2 domain found in Growth factor
                     receptor-bound protein 2 (Grb2) and similar proteins;
                     cd09941"
                     /db_xref="CDD:199828"
     Site            order(65,83,85,93,104,106)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:199828"
     Region          241..293
                     /region_name="SH3_GRAP2_C"
                     /note="C-terminal Src homology 3 domain of GRB2-related
                     adaptor protein 2; cd11950"
                     /db_xref="CDD:212883"
     Site            order(246,248..249,251..252,254..255,271,273..274,276,285,
                     287,289..290)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212883"
     CDS             1..296
                     /gene="GRAP2"
                     /coded_by="XM_009556641.2:49..939"
                     /db_xref="GeneID:104055512"
ORIGIN      
        1 meaiakfdfs asgedelsfq agdmlkvlss qedwykaelr sqegyvpknf idfhvppwfd
       61 erisrheaen ilmtkgvgsf ivrasqnshg dfsisvrhdd dvqhfkvmrd skgnyylwte
      121 kfhslnklvd yyktnsisrq kqiflrdnsr edkerhggsl ermgregfql sgaagedhss
      181 vskryvehpl pilqqqqgry ggsldrkdgl hgltdhsqgg aaamqrrhtd plhqqaprtl
      241 wvralydfda vehdelgfrs gdilevldss npswwkgrlr gelglfpany vtpvll
//
LOCUS       XP_053912647             306 aa            linear   VRT 09-MAR-2023
DEFINITION  GRB2-related adapter protein 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912647
VERSION     XP_053912647.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056672.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..306
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..306
                     /product="GRB2-related adapter protein 2 isoform X2"
                     /calculated_mol_wt=34883
     Region          12..62
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(17,19,22,26,43..44,57,59..60)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212880"
     Region          64..157
                     /region_name="SH2_Grb2_like"
                     /note="Src homology 2 domain found in Growth factor
                     receptor-bound protein 2 (Grb2) and similar proteins;
                     cd09941"
                     /db_xref="CDD:199828"
     Site            order(75,93,95,103,114,116)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:199828"
     Region          251..303
                     /region_name="SH3_GRAP2_C"
                     /note="C-terminal Src homology 3 domain of GRB2-related
                     adaptor protein 2; cd11950"
                     /db_xref="CDD:212883"
     Site            order(256,258..259,261..262,264..265,281,283..284,286,295,
                     297,299..300)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212883"
     CDS             1..306
                     /gene="GRAP2"
                     /coded_by="XM_054056672.1:15..935"
                     /db_xref="GeneID:104055512"
ORIGIN      
        1 mgfalptrhs meaiakfdfs asgedelsfq agdmlkvlss qedwykaelr sqegyvpknf
       61 idfhvppwfd erisrheaen ilmtkgvgsf ivrasqnshg dfsisvrhdd dvqhfkvmrd
      121 skgnyylwte kfhslnklvd yyktnsisrq kqiflrdnsr edkerhggsl ermgregfql
      181 sgaagedhss vskryvehpl pilqqqqgry ggsldrkdgl hgltdhsqgg aaamqrrhtd
      241 plhqqaprtl wvralydfda vehdelgfrs gdilevldss npswwkgrlr gelglfpany
      301 vtpvll
//
LOCUS       XP_053912648             296 aa            linear   VRT 09-MAR-2023
DEFINITION  GRB2-related adapter protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912648
VERSION     XP_053912648.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056673.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..296
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..296
                     /product="GRB2-related adapter protein 2 isoform X1"
                     /calculated_mol_wt=33785
     Region          2..52
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(7,9,12,16,33..34,47,49..50)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212880"
     Region          54..147
                     /region_name="SH2_Grb2_like"
                     /note="Src homology 2 domain found in Growth factor
                     receptor-bound protein 2 (Grb2) and similar proteins;
                     cd09941"
                     /db_xref="CDD:199828"
     Site            order(65,83,85,93,104,106)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:199828"
     Region          241..293
                     /region_name="SH3_GRAP2_C"
                     /note="C-terminal Src homology 3 domain of GRB2-related
                     adaptor protein 2; cd11950"
                     /db_xref="CDD:212883"
     Site            order(246,248..249,251..252,254..255,271,273..274,276,285,
                     287,289..290)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212883"
     CDS             1..296
                     /gene="GRAP2"
                     /coded_by="XM_054056673.1:481..1371"
                     /db_xref="GeneID:104055512"
ORIGIN      
        1 meaiakfdfs asgedelsfq agdmlkvlss qedwykaelr sqegyvpknf idfhvppwfd
       61 erisrheaen ilmtkgvgsf ivrasqnshg dfsisvrhdd dvqhfkvmrd skgnyylwte
      121 kfhslnklvd yyktnsisrq kqiflrdnsr edkerhggsl ermgregfql sgaagedhss
      181 vskryvehpl pilqqqqgry ggsldrkdgl hgltdhsqgg aaamqrrhtd plhqqaprtl
      241 wvralydfda vehdelgfrs gdilevldss npswwkgrlr gelglfpany vtpvll
//
LOCUS       XP_053912649             296 aa            linear   VRT 09-MAR-2023
DEFINITION  GRB2-related adapter protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912649
VERSION     XP_053912649.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056674.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..296
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..296
                     /product="GRB2-related adapter protein 2 isoform X1"
                     /calculated_mol_wt=33785
     Region          2..52
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(7,9,12,16,33..34,47,49..50)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212880"
     Region          54..147
                     /region_name="SH2_Grb2_like"
                     /note="Src homology 2 domain found in Growth factor
                     receptor-bound protein 2 (Grb2) and similar proteins;
                     cd09941"
                     /db_xref="CDD:199828"
     Site            order(65,83,85,93,104,106)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:199828"
     Region          241..293
                     /region_name="SH3_GRAP2_C"
                     /note="C-terminal Src homology 3 domain of GRB2-related
                     adaptor protein 2; cd11950"
                     /db_xref="CDD:212883"
     Site            order(246,248..249,251..252,254..255,271,273..274,276,285,
                     287,289..290)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212883"
     CDS             1..296
                     /gene="GRAP2"
                     /coded_by="XM_054056674.1:172..1062"
                     /db_xref="GeneID:104055512"
ORIGIN      
        1 meaiakfdfs asgedelsfq agdmlkvlss qedwykaelr sqegyvpknf idfhvppwfd
       61 erisrheaen ilmtkgvgsf ivrasqnshg dfsisvrhdd dvqhfkvmrd skgnyylwte
      121 kfhslnklvd yyktnsisrq kqiflrdnsr edkerhggsl ermgregfql sgaagedhss
      181 vskryvehpl pilqqqqgry ggsldrkdgl hgltdhsqgg aaamqrrhtd plhqqaprtl
      241 wvralydfda vehdelgfrs gdilevldss npswwkgrlr gelglfpany vtpvll
//
LOCUS       XP_053912650             296 aa            linear   VRT 09-MAR-2023
DEFINITION  GRB2-related adapter protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912650
VERSION     XP_053912650.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056675.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..296
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..296
                     /product="GRB2-related adapter protein 2 isoform X1"
                     /calculated_mol_wt=33785
     Region          2..52
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(7,9,12,16,33..34,47,49..50)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212880"
     Region          54..147
                     /region_name="SH2_Grb2_like"
                     /note="Src homology 2 domain found in Growth factor
                     receptor-bound protein 2 (Grb2) and similar proteins;
                     cd09941"
                     /db_xref="CDD:199828"
     Site            order(65,83,85,93,104,106)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:199828"
     Region          241..293
                     /region_name="SH3_GRAP2_C"
                     /note="C-terminal Src homology 3 domain of GRB2-related
                     adaptor protein 2; cd11950"
                     /db_xref="CDD:212883"
     Site            order(246,248..249,251..252,254..255,271,273..274,276,285,
                     287,289..290)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212883"
     CDS             1..296
                     /gene="GRAP2"
                     /coded_by="XM_054056675.1:430..1320"
                     /db_xref="GeneID:104055512"
ORIGIN      
        1 meaiakfdfs asgedelsfq agdmlkvlss qedwykaelr sqegyvpknf idfhvppwfd
       61 erisrheaen ilmtkgvgsf ivrasqnshg dfsisvrhdd dvqhfkvmrd skgnyylwte
      121 kfhslnklvd yyktnsisrq kqiflrdnsr edkerhggsl ermgregfql sgaagedhss
      181 vskryvehpl pilqqqqgry ggsldrkdgl hgltdhsqgg aaamqrrhtd plhqqaprtl
      241 wvralydfda vehdelgfrs gdilevldss npswwkgrlr gelglfpany vtpvll
//
LOCUS       XP_053912651             296 aa            linear   VRT 09-MAR-2023
DEFINITION  GRB2-related adapter protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912651
VERSION     XP_053912651.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056676.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..296
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..296
                     /product="GRB2-related adapter protein 2 isoform X1"
                     /calculated_mol_wt=33785
     Region          2..52
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(7,9,12,16,33..34,47,49..50)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212880"
     Region          54..147
                     /region_name="SH2_Grb2_like"
                     /note="Src homology 2 domain found in Growth factor
                     receptor-bound protein 2 (Grb2) and similar proteins;
                     cd09941"
                     /db_xref="CDD:199828"
     Site            order(65,83,85,93,104,106)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:199828"
     Region          241..293
                     /region_name="SH3_GRAP2_C"
                     /note="C-terminal Src homology 3 domain of GRB2-related
                     adaptor protein 2; cd11950"
                     /db_xref="CDD:212883"
     Site            order(246,248..249,251..252,254..255,271,273..274,276,285,
                     287,289..290)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212883"
     CDS             1..296
                     /gene="GRAP2"
                     /coded_by="XM_054056676.1:280..1170"
                     /db_xref="GeneID:104055512"
ORIGIN      
        1 meaiakfdfs asgedelsfq agdmlkvlss qedwykaelr sqegyvpknf idfhvppwfd
       61 erisrheaen ilmtkgvgsf ivrasqnshg dfsisvrhdd dvqhfkvmrd skgnyylwte
      121 kfhslnklvd yyktnsisrq kqiflrdnsr edkerhggsl ermgregfql sgaagedhss
      181 vskryvehpl pilqqqqgry ggsldrkdgl hgltdhsqgg aaamqrrhtd plhqqaprtl
      241 wvralydfda vehdelgfrs gdilevldss npswwkgrlr gelglfpany vtpvll
//
LOCUS       XP_053912652             296 aa            linear   VRT 09-MAR-2023
DEFINITION  GRB2-related adapter protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912652
VERSION     XP_053912652.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056677.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..296
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..296
                     /product="GRB2-related adapter protein 2 isoform X1"
                     /calculated_mol_wt=33785
     Region          2..52
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(7,9,12,16,33..34,47,49..50)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212880"
     Region          54..147
                     /region_name="SH2_Grb2_like"
                     /note="Src homology 2 domain found in Growth factor
                     receptor-bound protein 2 (Grb2) and similar proteins;
                     cd09941"
                     /db_xref="CDD:199828"
     Site            order(65,83,85,93,104,106)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:199828"
     Region          241..293
                     /region_name="SH3_GRAP2_C"
                     /note="C-terminal Src homology 3 domain of GRB2-related
                     adaptor protein 2; cd11950"
                     /db_xref="CDD:212883"
     Site            order(246,248..249,251..252,254..255,271,273..274,276,285,
                     287,289..290)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212883"
     CDS             1..296
                     /gene="GRAP2"
                     /coded_by="XM_054056677.1:372..1262"
                     /db_xref="GeneID:104055512"
ORIGIN      
        1 meaiakfdfs asgedelsfq agdmlkvlss qedwykaelr sqegyvpknf idfhvppwfd
       61 erisrheaen ilmtkgvgsf ivrasqnshg dfsisvrhdd dvqhfkvmrd skgnyylwte
      121 kfhslnklvd yyktnsisrq kqiflrdnsr edkerhggsl ermgregfql sgaagedhss
      181 vskryvehpl pilqqqqgry ggsldrkdgl hgltdhsqgg aaamqrrhtd plhqqaprtl
      241 wvralydfda vehdelgfrs gdilevldss npswwkgrlr gelglfpany vtpvll
//
LOCUS       XP_053912653             296 aa            linear   VRT 09-MAR-2023
DEFINITION  GRB2-related adapter protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912653
VERSION     XP_053912653.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056678.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..296
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..296
                     /product="GRB2-related adapter protein 2 isoform X1"
                     /calculated_mol_wt=33785
     Region          2..52
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(7,9,12,16,33..34,47,49..50)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212880"
     Region          54..147
                     /region_name="SH2_Grb2_like"
                     /note="Src homology 2 domain found in Growth factor
                     receptor-bound protein 2 (Grb2) and similar proteins;
                     cd09941"
                     /db_xref="CDD:199828"
     Site            order(65,83,85,93,104,106)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:199828"
     Region          241..293
                     /region_name="SH3_GRAP2_C"
                     /note="C-terminal Src homology 3 domain of GRB2-related
                     adaptor protein 2; cd11950"
                     /db_xref="CDD:212883"
     Site            order(246,248..249,251..252,254..255,271,273..274,276,285,
                     287,289..290)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212883"
     CDS             1..296
                     /gene="GRAP2"
                     /coded_by="XM_054056678.1:216..1106"
                     /db_xref="GeneID:104055512"
ORIGIN      
        1 meaiakfdfs asgedelsfq agdmlkvlss qedwykaelr sqegyvpknf idfhvppwfd
       61 erisrheaen ilmtkgvgsf ivrasqnshg dfsisvrhdd dvqhfkvmrd skgnyylwte
      121 kfhslnklvd yyktnsisrq kqiflrdnsr edkerhggsl ermgregfql sgaagedhss
      181 vskryvehpl pilqqqqgry ggsldrkdgl hgltdhsqgg aaamqrrhtd plhqqaprtl
      241 wvralydfda vehdelgfrs gdilevldss npswwkgrlr gelglfpany vtpvll
//
LOCUS       XP_053912654             296 aa            linear   VRT 09-MAR-2023
DEFINITION  GRB2-related adapter protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912654
VERSION     XP_053912654.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056679.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..296
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..296
                     /product="GRB2-related adapter protein 2 isoform X1"
                     /calculated_mol_wt=33785
     Region          2..52
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(7,9,12,16,33..34,47,49..50)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212880"
     Region          54..147
                     /region_name="SH2_Grb2_like"
                     /note="Src homology 2 domain found in Growth factor
                     receptor-bound protein 2 (Grb2) and similar proteins;
                     cd09941"
                     /db_xref="CDD:199828"
     Site            order(65,83,85,93,104,106)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:199828"
     Region          241..293
                     /region_name="SH3_GRAP2_C"
                     /note="C-terminal Src homology 3 domain of GRB2-related
                     adaptor protein 2; cd11950"
                     /db_xref="CDD:212883"
     Site            order(246,248..249,251..252,254..255,271,273..274,276,285,
                     287,289..290)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212883"
     CDS             1..296
                     /gene="GRAP2"
                     /coded_by="XM_054056679.1:126..1016"
                     /db_xref="GeneID:104055512"
ORIGIN      
        1 meaiakfdfs asgedelsfq agdmlkvlss qedwykaelr sqegyvpknf idfhvppwfd
       61 erisrheaen ilmtkgvgsf ivrasqnshg dfsisvrhdd dvqhfkvmrd skgnyylwte
      121 kfhslnklvd yyktnsisrq kqiflrdnsr edkerhggsl ermgregfql sgaagedhss
      181 vskryvehpl pilqqqqgry ggsldrkdgl hgltdhsqgg aaamqrrhtd plhqqaprtl
      241 wvralydfda vehdelgfrs gdilevldss npswwkgrlr gelglfpany vtpvll
//
LOCUS       XP_053912655            1207 aa            linear   VRT 09-MAR-2023
DEFINITION  atrophin-1 [Cuculus canorus].
ACCESSION   XP_053912655
VERSION     XP_053912655.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056680.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1207
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1207
                     /product="atrophin-1"
                     /calculated_mol_wt=127241
     Region          18..1205
                     /region_name="Atrophin-1"
                     /note="Atrophin-1 family; pfam03154"
                     /db_xref="CDD:460830"
     CDS             1..1207
                     /gene="ATN1"
                     /coded_by="XM_054056680.1:267..3890"
                     /db_xref="GeneID:104064396"
ORIGIN      
        1 mfssnraken ggptpkrmkt rqnkdsmsmr sgrkketpgp reelrsrgra spggvstsss
       61 dgkaeksrqa tkkgrveesc tpkgskqgrt eeiseseged tnapkknkte elpcppspsd
      121 vdsldghsfn demssdprdi dqdnrstsps vyspgsvend sdsssvlsqg pshsyhhppl
      181 fpqspsvapp pdslarpaep sfglpgevhp qgpssgsyhs qlegqasrif qaqapqtpas
      241 sssgvaapsa ppssssssss tsssssstha plyptanvvq vgakiasgvg glpapgareq
      301 plsakhnppp ttpislasvv gglppqktpp anppaappas apsfphvsan lppppalrpl
      361 ntavaasssp givgqalsgh lpsphamgqd kapalapsry pyappplpps sssaqypqps
      421 qplpsysasy ghsfpppsgl svssqppkyt qpslpsqpvw sqgpppysrp lgnsashpaa
      481 pfpsqpphhq qppqqhhhgh gsgggvspaa tappqppggy phgvesnthh pshatyglrl
      541 ypphsqaays qapsaaatap ssssssssss sssssaassq gsypgmcahp pgqspatytf
      601 ppppppspah gagppvtsaa ttlstviatm aspsaapykt vsppvppsav apygkraasp
      661 iptfqppapy kpgsppassa tpfraatppg yrmasspvag gykapspaps appplpgsma
      721 apappppplp lsaaqikqep seeyeppesp vpparspspp pkvvdvpsha sqsarfnkhl
      781 drgfnscsrt dlyfvpldgs klakkradlv ekvrreaeqk areekerere rerekerere
      841 kerelersvk maqegrpvec sslgpvphrp sfeqgsavat vppylgpdtp alrtlseyar
      901 phvmspsnrn hpfyvplgav dpgllgynvp aiyssdpatr erelrerear erdlrdrdlr
      961 erlkpgfevk paeleqlhav paaamdpfpr hgglslqtap glhpafpfhp glghlererl
     1021 alaagptlrp dmsyaerlaa erqhaervaa lsndplarlq mlnvtphhhq hshihshlhl
     1081 hqqdaihaas asvhplidpl asgshltrip ypagtipnpl lphplhenev lrhqlfaapy
     1141 rdlpgslsap msaahqlqam haqsaelqrl aleqqqwlha hhplhgvplp tqedyyshlk
     1201 kesdkpl
//
LOCUS       XP_053912656            1207 aa            linear   VRT 09-MAR-2023
DEFINITION  atrophin-1 [Cuculus canorus].
ACCESSION   XP_053912656
VERSION     XP_053912656.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056681.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1207
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1207
                     /product="atrophin-1"
                     /calculated_mol_wt=127241
     Region          18..1205
                     /region_name="Atrophin-1"
                     /note="Atrophin-1 family; pfam03154"
                     /db_xref="CDD:460830"
     CDS             1..1207
                     /gene="ATN1"
                     /coded_by="XM_054056681.1:212..3835"
                     /db_xref="GeneID:104064396"
ORIGIN      
        1 mfssnraken ggptpkrmkt rqnkdsmsmr sgrkketpgp reelrsrgra spggvstsss
       61 dgkaeksrqa tkkgrveesc tpkgskqgrt eeiseseged tnapkknkte elpcppspsd
      121 vdsldghsfn demssdprdi dqdnrstsps vyspgsvend sdsssvlsqg pshsyhhppl
      181 fpqspsvapp pdslarpaep sfglpgevhp qgpssgsyhs qlegqasrif qaqapqtpas
      241 sssgvaapsa ppssssssss tsssssstha plyptanvvq vgakiasgvg glpapgareq
      301 plsakhnppp ttpislasvv gglppqktpp anppaappas apsfphvsan lppppalrpl
      361 ntavaasssp givgqalsgh lpsphamgqd kapalapsry pyappplpps sssaqypqps
      421 qplpsysasy ghsfpppsgl svssqppkyt qpslpsqpvw sqgpppysrp lgnsashpaa
      481 pfpsqpphhq qppqqhhhgh gsgggvspaa tappqppggy phgvesnthh pshatyglrl
      541 ypphsqaays qapsaaatap ssssssssss sssssaassq gsypgmcahp pgqspatytf
      601 ppppppspah gagppvtsaa ttlstviatm aspsaapykt vsppvppsav apygkraasp
      661 iptfqppapy kpgsppassa tpfraatppg yrmasspvag gykapspaps appplpgsma
      721 apappppplp lsaaqikqep seeyeppesp vpparspspp pkvvdvpsha sqsarfnkhl
      781 drgfnscsrt dlyfvpldgs klakkradlv ekvrreaeqk areekerere rerekerere
      841 kerelersvk maqegrpvec sslgpvphrp sfeqgsavat vppylgpdtp alrtlseyar
      901 phvmspsnrn hpfyvplgav dpgllgynvp aiyssdpatr erelrerear erdlrdrdlr
      961 erlkpgfevk paeleqlhav paaamdpfpr hgglslqtap glhpafpfhp glghlererl
     1021 alaagptlrp dmsyaerlaa erqhaervaa lsndplarlq mlnvtphhhq hshihshlhl
     1081 hqqdaihaas asvhplidpl asgshltrip ypagtipnpl lphplhenev lrhqlfaapy
     1141 rdlpgslsap msaahqlqam haqsaelqrl aleqqqwlha hhplhgvplp tqedyyshlk
     1201 kesdkpl
//
LOCUS       XP_053912657             855 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912657
VERSION     XP_053912657.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056682.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..855
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..855
                     /product="ubiquitin carboxyl-terminal hydrolase 5 isoform
                     X1"
                     /calculated_mol_wt=95563
     Region          15..78
                     /region_name="zf-UBP_var"
                     /note="Variant UBP zinc finger; pfam17807"
                     /db_xref="CDD:407678"
     Region          198..271
                     /region_name="zf-UBP"
                     /note="Zn-finger in ubiquitin-hydrolases and other
                     protein; pfam02148"
                     /db_xref="CDD:460464"
     Region          326..851
                     /region_name="Peptidase_C19B"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02658"
                     /db_xref="CDD:239123"
     Site            order(329,334,815,831)
                     /site_type="active"
                     /db_xref="CDD:239123"
     Region          652..699
                     /region_name="UBA1_UBP5"
                     /note="UBA1 domain found in ubiquitin carboxyl-terminal
                     hydrolase 5 (UBP5); cd14383"
                     /db_xref="CDD:270566"
     Region          <705..>791
                     /region_name="rad23"
                     /note="UV excision repair protein Rad23; TIGR00601"
                     /db_xref="CDD:273167"
     Region          720..762
                     /region_name="UBA2_UBP5"
                     /note="UBA2 domain found in ubiquitin carboxyl-terminal
                     hydrolase 5 (UBP5); cd14386"
                     /db_xref="CDD:270569"
     Site            order(745,750..751,754..755,758..759,762)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270569"
     CDS             1..855
                     /gene="USP5"
                     /coded_by="XM_054056682.1:51..2618"
                     /db_xref="GeneID:104064364"
ORIGIN      
        1 maelsealls vlpsirvpka gdrvhkdeca fsfdtpesdg glyicmntfl gfgkqyvekh
       61 yqktgqrvyl hlkrtrkpke edsnssagdp prkkptrlai gveggfdite ekfeydedvk
      121 ivilpehldi prdgleglpd mvrdriasav eailtadsas rkqevqawdg evrrvskhaf
      181 slhqlqndvr ippcgwkcsk cdmrenlwln mtdgailcgr ryfdgsggnn havehyretg
      241 yplavklgti tpdgadvysy deddmvldpn laehlahfgi dmlkmqktdk tmteleidmn
      301 qrigeweliq esgvqlkply gpgytgirnl gnscylnsvm qvlfsipdfq rkyvdkleki
      361 fqsapadptq dfstqvaklg hgllsgeysk pasadgeqqp dqkgmqngia prmfksligk
      421 ghpefstnrq qdaqefflhf inmverncrs senpnevfrf lveeklkcla tekvkytqrv
      481 dyimqlpvpm daalnkdell eyeekkrqae eekqplpelv rakvpfsscl eaygapeqvd
      541 dfwstalqak svalkttrfa sfpdylviqi kkftfgldwv pkkldvsiem peeldisalq
      601 gtglqdgeee mpdiapplvt pdepkgslgf ygnedddsfc sphfssptsp mldesviiql
      661 vemgfpmdac rkavyytgns gveaamnwvm shmddpdfan plvlpgssgp gstiacpdpp
      721 sedsvativs mgfsrdqamk alratnnsle ravdwifshi ddldaeaamd isegrsaaes
      781 isesvpvgpk vrdgpgkyql fafishmgts tmcghyvchi kkdgrwviyn dqkvcasekp
      841 pkdlgyiyfy qrips
//
LOCUS       XP_053912658             832 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 5 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912658
VERSION     XP_053912658.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056683.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..832
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..832
                     /product="ubiquitin carboxyl-terminal hydrolase 5 isoform
                     X2"
                     /calculated_mol_wt=93098
     Region          15..78
                     /region_name="zf-UBP_var"
                     /note="Variant UBP zinc finger; pfam17807"
                     /db_xref="CDD:407678"
     Region          198..271
                     /region_name="zf-UBP"
                     /note="Zn-finger in ubiquitin-hydrolases and other
                     protein; pfam02148"
                     /db_xref="CDD:460464"
     Region          326..828
                     /region_name="Peptidase_C19B"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02658"
                     /db_xref="CDD:239123"
     Site            order(329,334,792,808)
                     /site_type="active"
                     /db_xref="CDD:239123"
     Region          629..676
                     /region_name="UBA1_UBP5"
                     /note="UBA1 domain found in ubiquitin carboxyl-terminal
                     hydrolase 5 (UBP5); cd14383"
                     /db_xref="CDD:270566"
     Region          <682..>768
                     /region_name="rad23"
                     /note="UV excision repair protein Rad23; TIGR00601"
                     /db_xref="CDD:273167"
     Region          697..739
                     /region_name="UBA2_UBP5"
                     /note="UBA2 domain found in ubiquitin carboxyl-terminal
                     hydrolase 5 (UBP5); cd14386"
                     /db_xref="CDD:270569"
     Site            order(722,727..728,731..732,735..736,739)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270569"
     CDS             1..832
                     /gene="USP5"
                     /coded_by="XM_054056683.1:51..2549"
                     /db_xref="GeneID:104064364"
ORIGIN      
        1 maelsealls vlpsirvpka gdrvhkdeca fsfdtpesdg glyicmntfl gfgkqyvekh
       61 yqktgqrvyl hlkrtrkpke edsnssagdp prkkptrlai gveggfdite ekfeydedvk
      121 ivilpehldi prdgleglpd mvrdriasav eailtadsas rkqevqawdg evrrvskhaf
      181 slhqlqndvr ippcgwkcsk cdmrenlwln mtdgailcgr ryfdgsggnn havehyretg
      241 yplavklgti tpdgadvysy deddmvldpn laehlahfgi dmlkmqktdk tmteleidmn
      301 qrigeweliq esgvqlkply gpgytgirnl gnscylnsvm qvlfsipdfq rkyvdkleki
      361 fqsapadptq dfstqvaklg hgllsgeysk pasadgeqqp dqkgmqngia prmfksligk
      421 ghpefstnrq qdaqefflhf inmverncrs senpnevfrf lveeklkcla tekvkytqrv
      481 dyimqlpvpm daalnkdell eyeekkrqae eekqplpelv rakvpfsscl eaygapeqvd
      541 dfwstalqak svalkttrfa sfpdylviqi kkftfgldwv pkkldvsiem peeldisalq
      601 gtglqdgeee mpdiapplvt pdepkapmld esviiqlvem gfpmdacrka vyytgnsgve
      661 aamnwvmshm ddpdfanplv lpgssgpgst iacpdppsed svativsmgf srdqamkalr
      721 atnnslerav dwifshiddl daeaamdise grsaaesise svpvgpkvrd gpgkyqlfaf
      781 ishmgtstmc ghyvchikkd grwviyndqk vcasekppkd lgyiyfyqri ps
//
LOCUS       XP_053912660             752 aa            linear   VRT 09-MAR-2023
DEFINITION  prolyl 3-hydroxylase 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912660
VERSION     XP_053912660.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056685.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..752
                     /product="prolyl 3-hydroxylase 3 isoform X1"
                     /calculated_mol_wt=85573
     Region          454..649
                     /region_name="P4Hc"
                     /note="Prolyl 4-hydroxylase alpha subunit homologues;
                     smart00702"
                     /db_xref="CDD:214780"
     CDS             1..752
                     /gene="P3H3"
                     /coded_by="XM_054056685.1:16..2274"
                     /db_xref="GeneID:104064399"
ORIGIN      
        1 mapvllplll lpllpavpaw pgapppdlll adgvrayear dwaraaallq rallshaglr
       61 rarrrcrrrc erldafppal rsargtgtdt gweeeeegwe aalfgpalrr alclqrclga
      121 rlgsapaahr asravraafd rrepynylqv affqlkkldq avsaahtffv anpqhlqmre
      181 diekyrrmsg vksdnfrdle aiphweayea gmqhynadey pqaaarlees ltealsaleq
      241 cralcegpwe dedeeeedmq pglyeaiaah yiqvlkcrqq cvldiatkpg wisatedfip
      301 shldllqfsy dqagnqtlaa ecaasyllfy pmdepmlerm keyhgelged trvtarenir
      361 hyvqrslmek kliyyavehl ggsfndpdlw tpdelipenl kkkhredqek qkqrtldvee
      421 rekrgplpfe giavtmdssq mngtqrvvfd rvlteseckd llrltkaage gyrsrrspht
      481 pherfegltv lkavqlaqng dvdwrdvkll lqaseksrki iesyftpgkk lhfsfthlvc
      541 rtaveeeqeg rmdlshpvha dnclldpegq ecwreppayv yrdysgilyl nddfqggdlf
      601 ftemdtvtvt akvhpkcgrl vafssgkenp hgvqavsrgr rcavalwyth sqehaeqcfv
      661 ssckqdkdpr megftsspss wlqervkaek lveqrdvedw pdgeerqgav hnsissserp
      721 vrssrarpts qthkpgsegt qrpkelrard ef
//
LOCUS       XP_053912661             726 aa            linear   VRT 09-MAR-2023
DEFINITION  prolyl 3-hydroxylase 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912661
VERSION     XP_053912661.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056686.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..726
                     /product="prolyl 3-hydroxylase 3 isoform X2"
                     /calculated_mol_wt=82639
     Region          454..649
                     /region_name="P4Hc"
                     /note="Prolyl 4-hydroxylase alpha subunit homologues;
                     smart00702"
                     /db_xref="CDD:214780"
     CDS             1..726
                     /gene="P3H3"
                     /coded_by="XM_054056686.1:16..2196"
                     /db_xref="GeneID:104064399"
ORIGIN      
        1 mapvllplll lpllpavpaw pgapppdlll adgvrayear dwaraaallq rallshaglr
       61 rarrrcrrrc erldafppal rsargtgtdt gweeeeegwe aalfgpalrr alclqrclga
      121 rlgsapaahr asravraafd rrepynylqv affqlkkldq avsaahtffv anpqhlqmre
      181 diekyrrmsg vksdnfrdle aiphweayea gmqhynadey pqaaarlees ltealsaleq
      241 cralcegpwe dedeeeedmq pglyeaiaah yiqvlkcrqq cvldiatkpg wisatedfip
      301 shldllqfsy dqagnqtlaa ecaasyllfy pmdepmlerm keyhgelged trvtarenir
      361 hyvqrslmek kliyyavehl ggsfndpdlw tpdelipenl kkkhredqek qkqrtldvee
      421 rekrgplpfe giavtmdssq mngtqrvvfd rvlteseckd llrltkaage gyrsrrspht
      481 pherfegltv lkavqlaqng dvdwrdvkll lqaseksrki iesyftpgkk lhfsfthlvc
      541 rtaveeeqeg rmdlshpvha dnclldpegq ecwreppayv yrdysgilyl nddfqggdlf
      601 ftemdtvtvt akvhpkcgrl vafssgkenp hgvqavsrgr rcavalwyth sqehaeqerv
      661 kaeklveqrd vedwpdgeer qgavhnsiss serpvrssra rptsqthkpg segtqrpkel
      721 rardef
//
LOCUS       XP_009564983             608 aa            linear   VRT 09-MAR-2023
DEFINITION  tyrosine-protein phosphatase non-receptor type 6 isoform X1
            [Cuculus canorus].
ACCESSION   XP_009564983
VERSION     XP_009564983.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566688.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564983.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..608
                     /product="tyrosine-protein phosphatase non-receptor type 6
                     isoform X1"
                     /calculated_mol_wt=68264
     Region          6..103
                     /region_name="SH2_N-SH2_SHP_like"
                     /note="N-terminal Src homology 2 (N-SH2) domain found in
                     SH2 domain Phosphatases (SHP) proteins; cd10340"
                     /db_xref="CDD:198203"
     Site            order(13,32,53,55)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:198203"
     Site            order(52..54,68,88..91,93)
                     /site_type="other"
                     /note="hydrophobic binding pocket [polypeptide binding]"
                     /db_xref="CDD:198203"
     Region          111..228
                     /region_name="SH2_C-SH2_SHP_like"
                     /note="C-terminal Src homology 2 (C-SH2) domain found in
                     SH2 domain Phosphatases (SHP) proteins; cd09931"
                     /db_xref="CDD:198185"
     Site            order(139,141,146..147)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:198185"
     Site            order(180,207)
                     /site_type="other"
                     /note="hydrophobic binding pocket [polypeptide binding]"
                     /db_xref="CDD:198185"
     Region          266..531
                     /region_name="PTPc-N6"
                     /note="catalytic domain of tyrosine-protein phosphatase
                     non-receptor type 6; cd14606"
                     /db_xref="CDD:350454"
     CDS             1..608
                     /gene="PTPN6"
                     /coded_by="XM_009566688.2:79..1905"
                     /db_xref="GeneID:104064361"
ORIGIN      
        1 mpscgwfhrd lsgleaeall kgrgvhgsfl arpsrknqgd fslsvrvgdq vthiriqntg
       61 dfydlyggek fatlselvey ytkqqgslqd kdgtvidlry plncsdptte rwyhghlsgs
      121 aaesllqaka tpwtflvres lskpgdfvls vltnqlkpgs aapatgatsa sgaplkvthi
      181 kimcengryt iggaemfdsl adlvehykkt gieevsgsfv ylkqpyyatr vnaadienrv
      241 qelnkkslse etskagfwee fdslqkqeak hlfdrhegqr penksknryk nilpfdhsrv
      301 vlqgrdpnip gsdyinanyv knnlispdec tktyiasqgc ldatvndfwq mvwqentrii
      361 vmttrevekg rnkcvpywpe vgstkeygay lvenagehda leyklrhfcv cprdngkavr
      421 eiwqyqylsw pdhgvpsepg gvlsfldqin qkqesipdag pilvhcsagi grtgtiivid
      481 mivetistkg ldcdidiqkt iqmvraqrsg mvqteaqykf iymaicqfie ttkkkleviq
      541 sqkgkpnese ygniayppav rnvhakasrk sskqkeestv yenlgkkeek vpkqrslekk
      601 lkgslkkk
//
LOCUS       XP_009564984             606 aa            linear   VRT 09-MAR-2023
DEFINITION  tyrosine-protein phosphatase non-receptor type 6 isoform X2
            [Cuculus canorus].
ACCESSION   XP_009564984
VERSION     XP_009564984.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566689.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564984.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..606
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..606
                     /product="tyrosine-protein phosphatase non-receptor type 6
                     isoform X2"
                     /calculated_mol_wt=68174
     Region          3..101
                     /region_name="SH2_N-SH2_SHP_like"
                     /note="N-terminal Src homology 2 (N-SH2) domain found in
                     SH2 domain Phosphatases (SHP) proteins; cd10340"
                     /db_xref="CDD:198203"
     Site            order(11,30,51,53)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:198203"
     Site            order(50..52,66,86..89,91)
                     /site_type="other"
                     /note="hydrophobic binding pocket [polypeptide binding]"
                     /db_xref="CDD:198203"
     Region          109..226
                     /region_name="SH2_C-SH2_SHP_like"
                     /note="C-terminal Src homology 2 (C-SH2) domain found in
                     SH2 domain Phosphatases (SHP) proteins; cd09931"
                     /db_xref="CDD:198185"
     Site            order(137,139,144..145)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:198185"
     Site            order(178,205)
                     /site_type="other"
                     /note="hydrophobic binding pocket [polypeptide binding]"
                     /db_xref="CDD:198185"
     Region          264..529
                     /region_name="PTPc-N6"
                     /note="catalytic domain of tyrosine-protein phosphatase
                     non-receptor type 6; cd14606"
                     /db_xref="CDD:350454"
     CDS             1..606
                     /gene="PTPN6"
                     /coded_by="XM_009566689.2:317..2137"
                     /db_xref="GeneID:104064361"
ORIGIN      
        1 mvrwfhrdls gleaeallkg rgvhgsflar psrknqgdfs lsvrvgdqvt hiriqntgdf
       61 ydlyggekfa tlselveyyt kqqgslqdkd gtvidlrypl ncsdptterw yhghlsgsaa
      121 esllqakatp wtflvresls kpgdfvlsvl tnqlkpgsaa patgatsasg aplkvthiki
      181 mcengrytig gaemfdslad lvehykktgi eevsgsfvyl kqpyyatrvn aadienrvqe
      241 lnkkslseet skagfweefd slqkqeakhl fdrhegqrpe nksknrykni lpfdhsrvvl
      301 qgrdpnipgs dyinanyvkn nlispdectk tyiasqgcld atvndfwqmv wqentriivm
      361 ttrevekgrn kcvpywpevg stkeygaylv enagehdale yklrhfcvcp rdngkavrei
      421 wqyqylswpd hgvpsepggv lsfldqinqk qesipdagpi lvhcsagigr tgtiividmi
      481 vetistkgld cdidiqktiq mvraqrsgmv qteaqykfiy maicqfiett kkkleviqsq
      541 kgkpneseyg niayppavrn vhakasrkss kqkeestvye nlgkkeekvp kqrslekklk
      601 gslkkk
//
LOCUS       XP_009564993             569 aa            linear   VRT 09-MAR-2023
DEFINITION  probable G-protein coupled receptor 162 [Cuculus canorus].
ACCESSION   XP_009564993
VERSION     XP_009564993.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566698.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..569
                     /product="probable G-protein coupled receptor 162"
                     /calculated_mol_wt=64345
     Region          11..326
                     /region_name="7tmA_GPR162"
                     /note="G protein-coupled receptor 162, member of the class
                     A family of seven-transmembrane G protein-coupled
                     receptors; cd15906"
                     /db_xref="CDD:320572"
     Region          12..38
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320572"
     Region          45..69
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320572"
     Site            order(65,68..69,86..91,93..94,97,142,144..148,173,
                     176..178,180..182,184..185,275,278..279,281..282,285,
                     293..294,296..298,301,304..305)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320572"
     Region          86..116
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320572"
     Region          128..150
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320572"
     Region          175..203
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320572"
     Region          254..284
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320572"
     Region          294..319
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320572"
     CDS             1..569
                     /gene="GPR162"
                     /coded_by="XM_009566698.2:574..2283"
                     /db_xref="GeneID:104064367"
ORIGIN      
        1 mgdsdsestl hnnslwwlac gmlallansw iilsitakqq khkplelllc flagthilma
       61 avplttyavv qlrressdyd wnesickvfv styytlalat cftvaslsyh rmwmvrwpvn
      121 yrlsnakkqa lhavmgiwmv sfilstlpsi gwhnngeryy argcqfivsk iglgfgvcfs
      181 llllggivmg lvcvgitfyq tlwahrrrrq crhqraeeas scsssahttf nvpaivvedv
      241 rgkrrssldg sesaktslqm tnlisaivfl ydtltgvpil vvsffslryd taptwmvlav
      301 lwcsmvqtll lpsfiwscer yradlrtvwe qcvaimseed gdddgvcddy gdgrickvrf
      361 dangaaavkr dsrdikllpm hhmllpqdnv hylqvpisrr mshdetnifs ahrsapsflh
      421 kwsssddiri stprklggpg flpphlhdyq hrrrppedel ttlrqflegg llprgssssa
      481 cffrdeittf idetpqptpa csprhsrlpv asrrdrrlsl gsreeentdr prrcslagne
      541 pwhlqdgeqt pcertleace sqtfqdpkl
//
LOCUS       XP_053912663             512 aa            linear   VRT 09-MAR-2023
DEFINITION  T-cell surface glycoprotein CD4 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912663
VERSION     XP_053912663.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056688.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..512
                     /product="T-cell surface glycoprotein CD4 isoform X1"
                     /calculated_mol_wt=57535
     Region          33..117
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          41..45
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409455"
     Region          53..71
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409455"
     Region          113..116
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409455"
     Region          118..213
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          134..138
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409491"
     Region          148..152
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409491"
     Region          174..178
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409491"
     Region          188..193
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409491"
     Region          203..206
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409491"
     Region          222..328
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          229..233
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409492"
     Region          247..251
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409492"
     Region          296..300
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409492"
     Region          310..315
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409492"
     Region          323..326
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409492"
     Region          332..418
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          347..351
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409491"
     Region          360..364
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409491"
     Region          381..385
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409491"
     Region          394..399
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409491"
     Region          408..411
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409491"
     CDS             1..512
                     /gene="LOC104064368"
                     /coded_by="XM_054056688.1:311..1849"
                     /db_xref="GeneID:104064368"
ORIGIN      
        1 mescgravss tlaiylvlhl glipimaqrn ylqtgvagga vilqcrgiph dtgvtwkyyk
       61 itvrlfktta lkgkatmter seitknkhlk vwdlrlsdag iytceygsqt vsislhvfkl
      121 tissdghflp nevpeltimq nsshplpnli iklfnsndkt vqtkflqnet pekyvlklke
      181 leamdngtwt chvhssspli nqnisfdvkv lgfqnpdwer kyatvdstvi lswhlnfqki
      241 kwkggfagql swkqqesaas hqlldfnita rgekhetkks nhfwfeiles kpestvgvkl
      301 pkvhfnhsgq yecqlaykgr ytqskielvv mkvsanpvgp lprgskmtli cqvssplppn
      361 ahlrwervng tqmdiknsnh hevkvevnvs aaglwnchlm edndrkisln ylvvlfsfcr
      421 gsscldhlcg nrskycrqci gvwlcvpmhh wwyklakeea kgkkdgtskt ilagkqdmsv
      481 stvsgnetis gtengqilwf qgrgagwsgg ek
//
LOCUS       XP_053912664             487 aa            linear   VRT 09-MAR-2023
DEFINITION  T-cell surface glycoprotein CD4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912664
VERSION     XP_053912664.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056689.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..487
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..487
                     /product="T-cell surface glycoprotein CD4 isoform X2"
                     /calculated_mol_wt=54896
     Region          8..92
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          16..20
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409455"
     Region          28..46
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409455"
     Region          88..91
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409455"
     Region          93..188
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          109..113
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409491"
     Region          123..127
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409491"
     Region          149..153
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409491"
     Region          163..168
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409491"
     Region          178..181
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409491"
     Region          197..303
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          204..208
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409492"
     Region          222..226
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409492"
     Region          271..275
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409492"
     Region          285..290
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409492"
     Region          298..301
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409492"
     Region          307..393
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          322..326
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409491"
     Region          335..339
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409491"
     Region          356..360
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409491"
     Region          369..374
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409491"
     Region          383..386
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409491"
     CDS             1..487
                     /gene="LOC104064368"
                     /coded_by="XM_054056689.1:254..1717"
                     /db_xref="GeneID:104064368"
ORIGIN      
        1 maqrnylqtg vaggavilqc rgiphdtgvt wkyykitvrl fkttalkgka tmterseitk
       61 nkhlkvwdlr lsdagiytce ygsqtvsisl hvfkltissd ghflpnevpe ltimqnsshp
      121 lpnliiklfn sndktvqtkf lqnetpekyv lklkeleamd ngtwtchvhs ssplinqnis
      181 fdvkvlgfqn pdwerkyatv dstvilswhl nfqkikwkgg fagqlswkqq esaashqlld
      241 fnitargekh etkksnhfwf eileskpest vgvklpkvhf nhsgqyecql aykgrytqsk
      301 ielvvmkvsa npvgplprgs kmtlicqvss plppnahlrw ervngtqmdi knsnhhevkv
      361 evnvsaaglw nchlmedndr kislnylvvl fsfcrgsscl dhlcgnrsky crqcigvwlc
      421 vpmhhwwykl akeeakgkkd gtsktilagk qdmsvstvsg netisgteng qilwfqgrga
      481 gwsggek
//
LOCUS       XP_053912665             485 aa            linear   VRT 09-MAR-2023
DEFINITION  T-cell surface glycoprotein CD4 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912665
VERSION     XP_053912665.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056690.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..485
                     /product="T-cell surface glycoprotein CD4 isoform X3"
                     /calculated_mol_wt=54727
     Region          33..117
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          41..45
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409455"
     Region          53..71
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409455"
     Region          113..116
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409455"
     Region          118..213
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          134..138
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409491"
     Region          148..152
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409491"
     Region          174..178
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409491"
     Region          188..193
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409491"
     Region          203..206
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409491"
     Region          222..328
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          229..233
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409492"
     Region          247..251
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409492"
     Region          296..300
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409492"
     Region          310..315
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409492"
     Region          323..326
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409492"
     Region          332..418
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          347..351
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409491"
     Region          360..364
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409491"
     Region          381..385
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409491"
     Region          394..399
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409491"
     Region          408..411
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409491"
     CDS             1..485
                     /gene="LOC104064368"
                     /coded_by="XM_054056690.1:311..1768"
                     /db_xref="GeneID:104064368"
ORIGIN      
        1 mescgravss tlaiylvlhl glipimaqrn ylqtgvagga vilqcrgiph dtgvtwkyyk
       61 itvrlfktta lkgkatmter seitknkhlk vwdlrlsdag iytceygsqt vsislhvfkl
      121 tissdghflp nevpeltimq nsshplpnli iklfnsndkt vqtkflqnet pekyvlklke
      181 leamdngtwt chvhssspli nqnisfdvkv lgfqnpdwer kyatvdstvi lswhlnfqki
      241 kwkggfagql swkqqesaas hqlldfnita rgekhetkks nhfwfeiles kpestvgvkl
      301 pkvhfnhsgq yecqlaykgr ytqskielvv mkvsanpvgp lprgskmtli cqvssplppn
      361 ahlrwervng tqmdiknsnh hevkvevnvs aaglwnchlm edndrkisln ylvvlfsfcr
      421 gsscldhlcg nrskycrqci gvwlcvpmhh wwyklakeea kgkkdgtskt ilagkqdmsv
      481 stpae
//
LOCUS       XP_053912666             481 aa            linear   VRT 09-MAR-2023
DEFINITION  T-cell surface glycoprotein CD4 isoform X4 [Cuculus canorus].
ACCESSION   XP_053912666
VERSION     XP_053912666.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056691.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..481
                     /product="T-cell surface glycoprotein CD4 isoform X4"
                     /calculated_mol_wt=53937
     Region          33..117
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          41..45
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409455"
     Region          53..71
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409455"
     Region          113..116
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409455"
     Region          118..213
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          134..138
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409491"
     Region          148..152
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409491"
     Region          174..178
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409491"
     Region          188..193
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409491"
     Region          203..206
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409491"
     Region          222..328
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          229..233
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409492"
     Region          247..251
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409492"
     Region          296..300
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409492"
     Region          310..315
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409492"
     Region          323..326
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409492"
     CDS             1..481
                     /gene="LOC104064368"
                     /coded_by="XM_054056691.1:311..1756"
                     /db_xref="GeneID:104064368"
ORIGIN      
        1 mescgravss tlaiylvlhl glipimaqrn ylqtgvagga vilqcrgiph dtgvtwkyyk
       61 itvrlfktta lkgkatmter seitknkhlk vwdlrlsdag iytceygsqt vsislhvfkl
      121 tissdghflp nevpeltimq nsshplpnli iklfnsndkt vqtkflqnet pekyvlklke
      181 leamdngtwt chvhssspli nqnisfdvkv lgfqnpdwer kyatvdstvi lswhlnfqki
      241 kwkggfagql swkqqesaas hqlldfnita rgekhetkks nhfwfeiles kpestvgvkl
      301 pkvhfnhsgq yecqlaykgr ytqskielvv mkvsanpvgp lprgskmtli cqvssplppn
      361 ahlrwervng tqmdiknsnh hevkvevnvs aaglwnchlm edndrkisln ylveeapvwi
      421 tyvaiaasia gsvlvfgfac lciiggiswq rrrvsalvpt kgkkmtvppn yrshlilcls
      481 a
//
LOCUS       XP_053912667             480 aa            linear   VRT 09-MAR-2023
DEFINITION  T-cell surface glycoprotein CD4 isoform X5 [Cuculus canorus].
ACCESSION   XP_053912667
VERSION     XP_053912667.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056692.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..480
                     /product="T-cell surface glycoprotein CD4 isoform X5"
                     /calculated_mol_wt=54313
     Region          33..117
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          41..45
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409455"
     Region          53..71
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409455"
     Region          113..116
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409455"
     Region          118..213
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          134..138
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409491"
     Region          148..152
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409491"
     Region          174..178
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409491"
     Region          188..193
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409491"
     Region          203..206
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409491"
     Region          222..328
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          229..233
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409492"
     Region          247..251
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409492"
     Region          296..300
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409492"
     Region          310..315
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409492"
     Region          323..326
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409492"
     CDS             1..480
                     /gene="LOC104064368"
                     /coded_by="XM_054056692.1:311..1753"
                     /db_xref="GeneID:104064368"
ORIGIN      
        1 mescgravss tlaiylvlhl glipimaqrn ylqtgvagga vilqcrgiph dtgvtwkyyk
       61 itvrlfktta lkgkatmter seitknkhlk vwdlrlsdag iytceygsqt vsislhvfkl
      121 tissdghflp nevpeltimq nsshplpnli iklfnsndkt vqtkflqnet pekyvlklke
      181 leamdngtwt chvhssspli nqnisfdvkv lgfqnpdwer kyatvdstvi lswhlnfqki
      241 kwkggfagql swkqqesaas hqlldfnita rgekhetkks nhfwfeiles kpestvgvkl
      301 pkvhfnhsgq yecqlaykgr ytqskielvv mkvsanpvgp lprgskmtli cqvssplppn
      361 ahlrwervng tqmdiknsnh hevkvevnvs aaglwnchlm edndrkisln ylveeapvwi
      421 tyvaiaasia gsvlvfgfac lciiggiswq rrrqrarrma rarqyllenk tcqcrhrlnk
//
LOCUS       XP_053912668             393 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC104064368 isoform X6 [Cuculus canorus].
ACCESSION   XP_053912668
VERSION     XP_053912668.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056693.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..393
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..393
                     /product="uncharacterized protein LOC104064368 isoform X6"
                     /calculated_mol_wt=44338
     Region          1..94
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          15..19
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409491"
     Region          29..33
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409491"
     Region          55..59
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409491"
     Region          69..74
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409491"
     Region          84..87
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409491"
     Region          103..209
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          110..114
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409492"
     Region          128..132
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409492"
     Region          177..181
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409492"
     Region          191..196
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409492"
     Region          204..207
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409492"
     Region          213..299
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          228..232
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409491"
     Region          241..245
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409491"
     Region          262..266
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409491"
     Region          275..280
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409491"
     Region          289..292
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409491"
     CDS             1..393
                     /gene="LOC104064368"
                     /coded_by="XM_054056693.1:107..1288"
                     /db_xref="GeneID:104064368"
ORIGIN      
        1 mtissdghfl pnevpeltim qnsshplpnl iiklfnsndk tvqtkflqne tpekyvlklk
       61 eleamdngtw tchvhssspl inqnisfdvk vlgfqnpdwe rkyatvdstv ilswhlnfqk
      121 ikwkggfagq lswkqqesaa shqlldfnit argekhetkk snhfwfeile skpestvgvk
      181 lpkvhfnhsg qyecqlaykg rytqskielv vmkvsanpvg plprgskmtl icqvssplpp
      241 nahlrwervn gtqmdiknsn hhevkvevnv saaglwnchl medndrkisl nylvvlfsfc
      301 rgsscldhlc gnrskycrqc igvwlcvpmh hwwyklakee akgkkdgtsk tilagkqdms
      361 vstvsgneti sgtengqilw fqgrgagwsg gek
//
LOCUS       XP_009564996             507 aa            linear   VRT 09-MAR-2023
DEFINITION  lymphocyte activation gene 3 protein isoform X1 [Cuculus canorus].
ACCESSION   XP_009564996
VERSION     XP_009564996.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566701.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..507
                     /product="lymphocyte activation gene 3 protein isoform X1"
                     /calculated_mol_wt=55433
     Region          41..149
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          44..48
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          67..71
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          115..119
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          129..134
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          152..223
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          166..170
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          180..184
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          195..205
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          215..220
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          247..333
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          333..416
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     CDS             1..507
                     /gene="LAG3"
                     /coded_by="XM_009566701.2:182..1705"
                     /db_xref="GeneID:104064369"
ORIGIN      
        1 mrpvslvlfl tfiplafnag hilqgvadge skeqkvwara gssavlpchl sprkrwkslk
       61 elhdktsvvw krhggsshqe phivleveyt glrktarpmr prvsvqdsal rngifslrid
      121 pvwsedagly eaqvaydmev qscqvelgvi tvtisppspv veneplllsc nsshrarlve
      181 trwfhnghlf ptsrtfcslh galsipqpam sdagswrcql rysdneiisa tynlqilgfd
      241 gpanpmvyaa agsaadlpct lsylpsafgt nmvtahwshf agghlqdwsi pqnsssrsfp
      301 lrlpvvgpgd agqyrcaisv gsktvsrdvt lavvtvtpsi qgpvsegshl llicslihpr
      361 gheryqwkhl dsaptnskla vatphnldgh tsqtsptlei lrvsqkdtgt wecsvhgpeg
      421 rlgaveyglq itgahisspp sifsgqvtfg lmltlflllm vcvlaftvqk rarypafpal
      481 egmvavtvpr kkemeenqke kiqqtec
//
LOCUS       XP_053912670             409 aa            linear   VRT 09-MAR-2023
DEFINITION  lymphocyte activation gene 3 protein isoform X2 [Cuculus canorus].
ACCESSION   XP_053912670
VERSION     XP_053912670.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056695.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..409
                     /product="lymphocyte activation gene 3 protein isoform X2"
                     /calculated_mol_wt=45284
     Region          41..149
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          44..48
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409462"
     Region          67..71
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409462"
     Region          115..119
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409462"
     Region          129..134
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409462"
     Region          152..223
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          166..170
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409410"
     Region          180..184
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409410"
     Region          195..205
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409410"
     Region          215..220
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409410"
     Region          240..318
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     CDS             1..409
                     /gene="LAG3"
                     /coded_by="XM_054056695.1:182..1411"
                     /db_xref="GeneID:104064369"
ORIGIN      
        1 mrpvslvlfl tfiplafnag hilqgvadge skeqkvwara gssavlpchl sprkrwkslk
       61 elhdktsvvw krhggsshqe phivleveyt glrktarpmr prvsvqdsal rngifslrid
      121 pvwsedagly eaqvaydmev qscqvelgvi tvtisppspv veneplllsc nsshrarlve
      181 trwfhnghlf ptsrtfcslh galsipqpam sdagswrcql rysdneiisa tynlqilvtp
      241 siqgpvsegs hlllicslih prgheryqwk hldsaptnsk lavatphnld ghtsqtsptl
      301 eilrvsqkdt gtwecsvhgp egrlgaveyg lqitgahiss ppsifsgqvt fglmltlfll
      361 lmvcvlaftv qkrarypafp alegmvavtv prkkemeenq kekiqqtec
//
LOCUS       XP_053912671             469 aa            linear   VRT 09-MAR-2023
DEFINITION  lysophospholipid acyltransferase 5 [Cuculus canorus].
ACCESSION   XP_053912671
VERSION     XP_053912671.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056696.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..469
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..469
                     /product="lysophospholipid acyltransferase 5"
                     /calculated_mol_wt=54159
     Region          13..441
                     /region_name="MBOAT"
                     /note="membrane-bound O-acyltransferase family; cl00738"
                     /db_xref="CDD:445070"
     CDS             1..469
                     /gene="LPCAT3"
                     /coded_by="XM_054056696.1:79..1488"
                     /db_xref="GeneID:104064393"
ORIGIN      
        1 mapagsgwgl arlaealgss eqalrlivsi lmgypfalfq ryflfqkety lihlynvftg
       61 lsiayfnfgm qffhsllcvl iqflilrlmg rtitavfttf vfqmtylmag yyftatehyd
      121 ikwtmphcvl tlkliglaid yydggkdlef ltpeqrrfav rgvptllevs gfsyfygafm
      181 vgpqfsmtdy qrlargemtd vpgqrpnsfv palkrlslgl lflvtytlss lyisdeylis
      241 deymekpfwf rcgyiliwgk iilykyvtcw lvtegvcilv glgyngkdqn gkplwnacan
      301 mkvwlyettp lftgtiasfn intnawvary ifkrlkflgn kllsqalalf flaiwhglhs
      361 gylvcfqmel liviverqvi nlvrdspals tlasitalrp vfyvlqqanh wmfmgyslvp
      421 fclftwdkwm kvyrsiyflg hvlfftlllv lpyirrlivp rkeklkkae
//
LOCUS       XP_009564986             434 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-enolase [Cuculus canorus].
ACCESSION   XP_009564986
VERSION     XP_009564986.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566691.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..434
                     /product="gamma-enolase"
                     /calculated_mol_wt=47193
     Region          2..432
                     /region_name="PLN00191"
                     /note="enolase"
                     /db_xref="CDD:215095"
     CDS             1..434
                     /gene="ENO2"
                     /coded_by="XM_009566691.2:167..1471"
                     /db_xref="GeneID:104064362"
ORIGIN      
        1 maverihare ildsrgnptv evdlythkgm fraavpsgas tgiyealelr dndksrflgk
       61 gvlqavdhin stvapalvgs glsvvdqeki dnlmlemdgt enkskfgana ilgvslavck
      121 agaaekdvpl yrhiadlagn sdlilpvpaf nvinggshag nklamqefmi lpvgaesfrd
      181 amrigaevyh nlksvikeky gkdatnvgde ggfapnilen sealellkea idkagytdki
      241 vigmdvaase fyrdgkydld fkspddpsry isadelgdly qsfvrdypvv siedpfdqdd
      301 weawskftan vgiqivgddl tvtnpkrier aveekacncl llkvnqigsv teaiqackla
      361 qengwgvmvs hrsgetedtf iadlvvglct gqiktgapcr serlakynql mrieeelgde
      421 arfaghnfrn psvl
//
LOCUS       XP_009564991             340 aa            linear   VRT 09-MAR-2023
DEFINITION  guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3
            [Cuculus canorus].
ACCESSION   XP_009564991
VERSION     XP_009564991.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566696.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..340
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..340
                     /product="guanine nucleotide-binding protein
                     G(I)/G(S)/G(T) subunit beta-3"
                     /calculated_mol_wt=37156
     Region          48..340
                     /region_name="WD40"
                     /note="WD40 domain, found in a number of eukaryotic
                     proteins that cover a wide variety of functions including
                     adaptor/regulatory modules in signal transduction,
                     pre-mRNA processing and cytoskeleton assembly; typically
                     contains a GH dipeptide 11-24 residues from...; cd00200"
                     /db_xref="CDD:238121"
     Site            order(54,72,76,82..83,90..91,114,118,124..125,141..142,
                     159,163,169..170,183,201,205,211..212,224..225,243,247,
                     253..254,265..266,286,291,297..298,310..311,329,333,
                     339..340)
                     /site_type="active"
                     /note="structural tetrad [active]"
                     /db_xref="CDD:238121"
     Region          58..95
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          101..141
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          146..181
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          188..223
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          229..265
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          273..309
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          315..339
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     CDS             1..340
                     /gene="GNB3"
                     /coded_by="XM_009566696.2:259..1281"
                     /db_xref="GeneID:104064366"
ORIGIN      
        1 mgemeqmkqe aeqlkkqiad arkacadttl aqivsgmevv griqmrtrrt lrghlakiya
       61 mhwstdskll vsasqdgkli vwdtyttnkv haiplrsswv mtcayapsgn fvacggldnm
      121 csiynlktre gnvkvsrels ahtgylsccr flddnnivts sgdttcalwd ietgqqktvf
      181 lghtgdcmsl avspdfklfi sgacdatakl wdvregtcrq tfsghesdin aisffpngea
      241 ictgsddatc rlfdlradqe lvvyshesii cgitsvafsr sgrlllagyd dfncniwdsl
      301 kgervgilsg hdnrvsclgv tadgmavatg swdsflkiwn
//
LOCUS       XP_053912672             338 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich repeat-containing protein 23 [Cuculus canorus].
ACCESSION   XP_053912672
VERSION     XP_053912672.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056697.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..338
                     /product="leucine-rich repeat-containing protein 23"
                     /calculated_mol_wt=38142
     Region          <92..163
                     /region_name="PPP1R42"
                     /note="protein phosphatase 1 regulatory subunit 42;
                     cl42388"
                     /db_xref="CDD:455733"
     Region          92..113
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          114..155
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          145..303
                     /region_name="PPP1R42"
                     /note="protein phosphatase 1 regulatory subunit 42;
                     cl42388"
                     /db_xref="CDD:455733"
     Region          156..179
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          180..200
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          201..222
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          223..245
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          246..270
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          271..297
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     CDS             1..338
                     /gene="LRRC23"
                     /coded_by="XM_054056697.1:15..1031"
                     /db_xref="GeneID:104064397"
ORIGIN      
        1 mgdgeperge yspdeageed eeddddeeee alseqkeeeq epapcpltee vlkeglslls
       61 ktgnglahay vkfeaksknl tdisllecfi hlryvdlsen klqdlsplss lthllwlkvd
      121 gnlltracmq elpylqiisf arncikdteg ithprlanls lkenkiqtlq glshgqlfsl
      181 qilelrgnml estaglnlpk lknlylaqna irnleglegl eqlttlhlrd nqletldgfc
      241 ssmkclqyln lrnngissfq evaklqvlpm lqalvlmenp csdepnyrle vlvllphlqr
      301 ldkelfeede qaeaneirqk rqeeekeieg slegnvae
//
LOCUS       XP_009564722             684 aa            linear   VRT 09-MAR-2023
DEFINITION  transforming growth factor beta activator LRRC32 isoform X1
            [Cuculus canorus].
ACCESSION   XP_009564722
VERSION     XP_009564722.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566427.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564722.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..684
                     /product="transforming growth factor beta activator LRRC32
                     isoform X1"
                     /calculated_mol_wt=77684
     Region          59..402
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          61..84
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          85..108
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          109..135
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          136..160
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          161..184
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          185..208
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          209..229
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          230..253
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          254..275
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          302..>591
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          328..351
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          352..375
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          376..398
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          399..422
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          423..462
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          463..485
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          486..510
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          511..533
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          534..554
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     CDS             1..684
                     /gene="LRRC32"
                     /coded_by="XM_009566427.2:594..2648"
                     /db_xref="GeneID:104064131"
ORIGIN      
        1 mqetletrtm kmyvifflav vnkgtsnyqp tegmscemen sqafchnkdl hqiprelhln
       61 vnkidlsgnl iqsipempls fytslqcldl ssnqisfitp gvfahmtsll einlannhly
      121 elaqngtegi gllpkveild lshnslyngm aeyfikqapa lqylsladns iimisqkmfq
      181 gspslveidl qsniimeiee gafetlvnls klnlsmnsit cisdfnlrql eildlsrnsi
      241 etfhtvksdd eynlrcldls enkllhfpvf pqvnklvtln lsknliqlta esphnkmdym
      301 enewldasfh lldqkqsrnk sslylsqlvy ldlsyneiks ipgeffesml slhtlnlskn
      361 clqafavtyd salvsltvld lshnalqnlf ldagtlsnlk elyiqnnhlq alqfdifssl
      421 pnlrmlnlqs nnislcsmys glakqrlage esgcvsfvds palqylylad nmlnilpayt
      481 fyktslivld lsmnpglkie vkalsgleks leylylhgns lidlniylps fshlkhlnis
      541 enqlnwlpkw gsdsplevld lrnnrfstlq nsnilalens lknlyvtgnp lnccgniwls
      601 smiqnknvqi pnvehltcqy tqnfgyheem hirnirpedc ekedlkkinf liiltfvlvv
      661 sviiigvgsf fcfrrqnfsh qfka
//
LOCUS       XP_053912673             675 aa            linear   VRT 09-MAR-2023
DEFINITION  transforming growth factor beta activator LRRC32 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053912673
VERSION     XP_053912673.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056698.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..675
                     /product="transforming growth factor beta activator LRRC32
                     isoform X2"
                     /calculated_mol_wt=76593
     Region          50..393
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          52..75
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          76..99
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          100..126
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          127..151
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          152..175
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          176..199
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          200..220
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          221..244
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          245..266
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          293..>582
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          319..342
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          343..366
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          367..389
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          390..413
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          414..453
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          454..476
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          477..501
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          502..524
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          525..545
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     CDS             1..675
                     /gene="LRRC32"
                     /coded_by="XM_054056698.1:131..2158"
                     /db_xref="GeneID:104064131"
ORIGIN      
        1 mkmyviffla vvnkgtsnyq ptegmsceme nsqafchnkd lhqiprelhl nvnkidlsgn
       61 liqsipempl sfytslqcld lssnqisfit pgvfahmtsl leinlannhl yelaqngteg
      121 igllpkveil dlshnslyng maeyfikqap alqylsladn siimisqkmf qgspslveid
      181 lqsniimeie egafetlvnl sklnlsmnsi tcisdfnlrq leildlsrns ietfhtvksd
      241 deynlrcldl senkllhfpv fpqvnklvtl nlsknliqlt aesphnkmdy menewldasf
      301 hlldqkqsrn ksslylsqlv yldlsyneik sipgeffesm lslhtlnlsk nclqafavty
      361 dsalvsltvl dlshnalqnl fldagtlsnl kelyiqnnhl qalqfdifss lpnlrmlnlq
      421 snnislcsmy sglakqrlag eesgcvsfvd spalqylyla dnmlnilpay tfyktslivl
      481 dlsmnpglki evkalsglek sleylylhgn slidlniylp sfshlkhlni senqlnwlpk
      541 wgsdsplevl dlrnnrfstl qnsnilalen slknlyvtgn plnccgniwl ssmiqnknvq
      601 ipnvehltcq ytqnfgyhee mhirnirped cekedlkkin fliiltfvlv vsviiigvgs
      661 ffcfrrqnfs hqfka
//
LOCUS       XP_053912674             675 aa            linear   VRT 09-MAR-2023
DEFINITION  transforming growth factor beta activator LRRC32 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053912674
VERSION     XP_053912674.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056699.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..675
                     /product="transforming growth factor beta activator LRRC32
                     isoform X2"
                     /calculated_mol_wt=76593
     Region          50..393
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          52..75
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          76..99
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          100..126
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          127..151
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          152..175
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          176..199
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          200..220
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          221..244
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          245..266
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          293..>582
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          319..342
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          343..366
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          367..389
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          390..413
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          414..453
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          454..476
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          477..501
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          502..524
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          525..545
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     CDS             1..675
                     /gene="LRRC32"
                     /coded_by="XM_054056699.1:57..2084"
                     /db_xref="GeneID:104064131"
ORIGIN      
        1 mkmyviffla vvnkgtsnyq ptegmsceme nsqafchnkd lhqiprelhl nvnkidlsgn
       61 liqsipempl sfytslqcld lssnqisfit pgvfahmtsl leinlannhl yelaqngteg
      121 igllpkveil dlshnslyng maeyfikqap alqylsladn siimisqkmf qgspslveid
      181 lqsniimeie egafetlvnl sklnlsmnsi tcisdfnlrq leildlsrns ietfhtvksd
      241 deynlrcldl senkllhfpv fpqvnklvtl nlsknliqlt aesphnkmdy menewldasf
      301 hlldqkqsrn ksslylsqlv yldlsyneik sipgeffesm lslhtlnlsk nclqafavty
      361 dsalvsltvl dlshnalqnl fldagtlsnl kelyiqnnhl qalqfdifss lpnlrmlnlq
      421 snnislcsmy sglakqrlag eesgcvsfvd spalqylyla dnmlnilpay tfyktslivl
      481 dlsmnpglki evkalsglek sleylylhgn slidlniylp sfshlkhlni senqlnwlpk
      541 wgsdsplevl dlrnnrfstl qnsnilalen slknlyvtgn plnccgniwl ssmiqnknvq
      601 ipnvehltcq ytqnfgyhee mhirnirped cekedlkkin fliiltfvlv vsviiigvgs
      661 ffcfrrqnfs hqfka
//
LOCUS       XP_009564988             248 aa            linear   VRT 09-MAR-2023
DEFINITION  triosephosphate isomerase [Cuculus canorus].
ACCESSION   XP_009564988
VERSION     XP_009564988.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566693.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..248
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..248
                     /product="triosephosphate isomerase"
                     /calculated_mol_wt=26556
     Region          1..246
                     /region_name="PTZ00333"
                     /note="triosephosphate isomerase; Provisional"
                     /db_xref="CDD:240365"
     Site            order(11,13,95,165,171,211,230,232..233)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:238190"
     Site            order(11,14,45..47,49,52,64,82,85..86,97..98)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:238190"
     Site            order(13,95,165)
                     /site_type="active"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:238190"
     CDS             1..248
                     /gene="TPI1"
                     /coded_by="XM_009566693.2:67..813"
                     /db_xref="GeneID:104064363"
ORIGIN      
        1 maprkffvgg nwkmngdkks lgeliqtlng aklsgdtevv cgapsiyldf arqkldtkig
       61 vaaqncykvp kgaftgeisp amikdigatw vilghserrh vfgesdelig qkvahalaeg
      121 lgviacigek ldereagite kvvfeqtkai adnvkdwskv vlayepvwai gtgktatpqq
      181 aqevheklrg wlkshvsdav aqstriiygg svtgsnckel asqhdvdgfl vggaslkpef
      241 vdiinakh
//
LOCUS       XP_053912675             291 aa            linear   VRT 09-MAR-2023
DEFINITION  prohibitin-2 [Cuculus canorus].
ACCESSION   XP_053912675
VERSION     XP_053912675.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056700.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..291
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..291
                     /product="prohibitin-2"
                     /calculated_mol_wt=32234
     Region          40..235
                     /region_name="SPFH_prohibitin"
                     /note="Prohibitin family; SPFH (stomatin, prohibitin,
                     flotillin, and HflK/C) superfamily; cd03401"
                     /db_xref="CDD:259799"
     CDS             1..291
                     /gene="PHB2"
                     /coded_by="XM_054056700.1:48..923"
                     /db_xref="GeneID:104064394"
ORIGIN      
        1 maqnlkdlag rlpagprgvg talklllgag alaygvresi fiveggqrai ffnriggvqq
       61 dtilaeglhf rvpwfqypii ydirarprki ssptgskdlq mvnislrvlt rpnaaelpsm
      121 yqrlgldyee rvlpsivnev lksvvakfna sqlitqraqv sllirrelte rakdfslild
      181 dvaitelsfs reytaaveak qvaqqeaqra qflvekakqe qkqkivqaeg eataakmlge
      241 alsrnpgyik lrkiraaqni sktiaasqnr vyltadnlvl nlqdesftrg r
//
LOCUS       XP_053912676             235 aa            linear   VRT 09-MAR-2023
DEFINITION  cell division cycle-associated protein 3 [Cuculus canorus].
ACCESSION   XP_053912676
VERSION     XP_053912676.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056701.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..235
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..235
                     /product="cell division cycle-associated protein 3"
                     /calculated_mol_wt=24216
     Region          81..>142
                     /region_name="COG5373"
                     /note="Uncharacterized membrane protein [Function
                     unknown]"
                     /db_xref="CDD:444140"
     Region          <90..>198
                     /region_name="PRK12323"
                     /note="DNA polymerase III subunit gamma/tau; cl46901"
                     /db_xref="CDD:481241"
     CDS             1..235
                     /gene="CDCA3"
                     /coded_by="XM_054056701.1:204..911"
                     /db_xref="GeneID:104064398"
ORIGIN      
        1 mgvsgsapat pcnkllahvs dprspsagil rtpievlssp agspapgpaa aaperdprsp
       61 tpgisrtpmr sescdsvdcl vkqlseafga etplagvtcp peeptveeta rrstpevaaa
      121 pagevekpps psaaptrpar vavlgfssgs kparrktnnk imataggtar splsilqddn
      181 spstpvsrqv krhvlgenlg ekkevtvdls rtlksgscaw sdlnkenqqc pfven
//
LOCUS       XP_009564982             231 aa            linear   VRT 09-MAR-2023
DEFINITION  ribosomal RNA small subunit methyltransferase NEP1 [Cuculus
            canorus].
ACCESSION   XP_009564982
VERSION     XP_009564982.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566687.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..231
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..231
                     /product="ribosomal RNA small subunit methyltransferase
                     NEP1"
                     /calculated_mol_wt=25191
     Region          30..225
                     /region_name="Nep1-like"
                     /note="18S rRNA (pseudouridine(1248)-N1)-methyltransferase
                     Nep1; cd18088"
                     /db_xref="CDD:349961"
     Site            order(54..55,71,73,77,80..81,84,86,119,172,207,209,
                     211..212,214..215,218..219,222)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:349961"
     Site            order(163..165,187..188,190..191,193,204..207,209..211,
                     213,216)
                     /site_type="other"
                     /note="SAM binding site [chemical binding]"
                     /db_xref="CDD:349961"
     CDS             1..231
                     /gene="EMG1"
                     /coded_by="XM_009566687.2:85..780"
                     /db_xref="GeneID:104064360"
ORIGIN      
        1 maaprrarge datsedaspe skrprgqrrl vvvlegasle tvkvgktfel lncdkhkall
       61 lrngrdpgev rpdithqsll mlmdsplnra gllqvyihtq knvlievnpq triprtfdrf
      121 cglmvqllhk lsvraadgpq kllkviknpv sdhlpvgcmk igtsfavpkv sdlrelvpav
      181 epvaivvgaf ahgsvnvdyt ekmvsisnyp lsaaltcaki ttafeevwgv v
//
LOCUS       XP_053912678             122 aa            linear   VRT 09-MAR-2023
DEFINITION  protein C10 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912678
VERSION     XP_053912678.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056703.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..122
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..122
                     /product="protein C10 isoform X1"
                     /calculated_mol_wt=12694
     Region          11..110
                     /region_name="P_C10"
                     /note="Protein C10; pfam14974"
                     /db_xref="CDD:464416"
     CDS             1..122
                     /gene="C1H12orf57"
                     /coded_by="XM_054056703.1:109..477"
                     /db_xref="GeneID:104064395"
ORIGIN      
        1 maapaaalsa eqakvvlaev ikafgtpena qrmeeardna cndmgkmlqf llpvatqiqq
       61 dvikaygfsn dgegvlkfar lvksyesqdp eiasmsgklk amflppmtlp phgagaggva
      121 as
//
LOCUS       XP_053912679             110 aa            linear   VRT 09-MAR-2023
DEFINITION  protein C10 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912679
VERSION     XP_053912679.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056704.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..110
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..110
                     /product="protein C10 isoform X2"
                     /calculated_mol_wt=11570
     Region          3..98
                     /region_name="P_C10"
                     /note="Protein C10; pfam14974"
                     /db_xref="CDD:464416"
     CDS             1..110
                     /gene="C1H12orf57"
                     /coded_by="XM_054056704.1:116..448"
                     /db_xref="GeneID:104064395"
ORIGIN      
        1 mgvvlaevik afgtpenaqr meeardnacn dmgkmlqfll pvatqiqqdv ikaygfsndg
       61 egvlkfarlv ksyesqdpei asmsgklkam flppmtlpph gagaggvaas
//
LOCUS       XP_053912680             108 aa            linear   VRT 09-MAR-2023
DEFINITION  protein C10 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912680
VERSION     XP_053912680.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056705.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..108
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..108
                     /product="protein C10 isoform X3"
                     /calculated_mol_wt=11414
     Region          2..96
                     /region_name="P_C10"
                     /note="Protein C10; pfam14974"
                     /db_xref="CDD:464416"
     CDS             1..108
                     /gene="C1H12orf57"
                     /coded_by="XM_054056705.1:130..456"
                     /db_xref="GeneID:104064395"
ORIGIN      
        1 mvlaevikaf gtpenaqrme eardnacndm gkmlqfllpv atqiqqdvik aygfsndgeg
       61 vlkfarlvks yesqdpeias msgklkamfl ppmtlpphga gaggvaas
//
LOCUS       XP_053912681             632 aa            linear   VRT 09-MAR-2023
DEFINITION  probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase
            protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053912681
VERSION     XP_053912681.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056706.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..632
                     /product="probable bifunctional dTTP/UTP
                     pyrophosphatase/methyltransferase protein isoform X1"
                     /calculated_mol_wt=69967
     Region          15..208
                     /region_name="Maf"
                     /note="Nucleotide binding protein Maf. Maf has been
                     implicated in inhibition of septum formation in
                     eukaryotes, bacteria and archaea, but homologs in
                     B.subtilis and S.cerevisiae are nonessential for cell
                     division. Maf has been predicted to be a nucleotide-
                     or...; cd00555"
                     /db_xref="CDD:238310"
     Site            order(19,24,44,65,88,100)
                     /site_type="active"
                     /db_xref="CDD:238310"
     Site            order(59,139..142,144..145)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:238310"
     Region          301..384
                     /region_name="dimerization2"
                     /note="dimerization domain; pfam16864"
                     /db_xref="CDD:465287"
     Region          401..608
                     /region_name="AdoMet_MTases"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); cl17173"
                     /db_xref="CDD:473071"
     Site            order(470..476,494..495,520..522,537)
                     /site_type="other"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]"
                     /db_xref="CDD:100107"
     CDS             1..632
                     /gene="ASMTL"
                     /coded_by="XM_054056706.1:71..1969"
                     /db_xref="GeneID:104063720"
ORIGIN      
        1 malnpvlgkl vskrvvlasa sprrqeilan vglrfevvps wfketlekss faapyeyame
       61 takqkaleva nrmhikhlrt pdvvigadti vtvdeqilek pvdkqdayrm lsklngkehs
      121 vftgvaiihc sskdnqlete vtnfyeetkv kfsdlseell weyihsgepm dkaggygiqa
      181 lggmlveyvh gdflnvvgfp lnhfckklae lyypplkhni qhkkydsips vdtfenlsdg
      241 esessnsteh kdaskldssg mysseaiyns etsssvrtgf mvplenqngv sesaakspsk
      301 ilelmdgfra skalfvaskl kifdhlkdkg plkavniane igtsvcgter lldacaalgl
      361 lekttqgysn tdsantylts dgeyslygyi ihsndhlwpl ftnlesavke gsrqnhrafg
      421 kkaddlfkdy yhsqevtqrf maamhsiahl takdvatafd lsqfksacdl ggctgalahe
      481 lvriypnlkv tvfdlpevia ntsyfqpsgq htapvtfvsg dffkdslpea dlyilsrvlh
      541 dwpdekihll lskisalckp gsallvaeiv ldeqkthppr avlqslsmte gkqrsgseyk
      601 qllekygftn vqikitgnll davlcikknl sf
//
LOCUS       XP_009564266             631 aa            linear   VRT 09-MAR-2023
DEFINITION  probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase
            protein isoform X2 [Cuculus canorus].
ACCESSION   XP_009564266
VERSION     XP_009564266.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565971.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..631
                     /product="probable bifunctional dTTP/UTP
                     pyrophosphatase/methyltransferase protein isoform X2"
                     /calculated_mol_wt=69847
     Region          15..208
                     /region_name="Maf"
                     /note="Nucleotide binding protein Maf. Maf has been
                     implicated in inhibition of septum formation in
                     eukaryotes, bacteria and archaea, but homologs in
                     B.subtilis and S.cerevisiae are nonessential for cell
                     division. Maf has been predicted to be a nucleotide-
                     or...; cd00555"
                     /db_xref="CDD:238310"
     Site            order(19,24,44,65,88,100)
                     /site_type="active"
                     /db_xref="CDD:238310"
     Site            order(59,139..142,144..145)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:238310"
     Region          301..384
                     /region_name="dimerization2"
                     /note="dimerization domain; pfam16864"
                     /db_xref="CDD:465287"
     Region          401..610
                     /region_name="AdoMet_MTases"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); cl17173"
                     /db_xref="CDD:473071"
     Site            order(470..476,494..495,520..522,537)
                     /site_type="other"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]"
                     /db_xref="CDD:100107"
     CDS             1..631
                     /gene="ASMTL"
                     /coded_by="XM_009565971.2:71..1966"
                     /db_xref="GeneID:104063720"
ORIGIN      
        1 malnpvlgkl vskrvvlasa sprrqeilan vglrfevvps wfketlekss faapyeyame
       61 takqkaleva nrmhikhlrt pdvvigadti vtvdeqilek pvdkqdayrm lsklngkehs
      121 vftgvaiihc sskdnqlete vtnfyeetkv kfsdlseell weyihsgepm dkaggygiqa
      181 lggmlveyvh gdflnvvgfp lnhfckklae lyypplkhni qhkkydsips vdtfenlsdg
      241 esessnsteh kdaskldssg mysseaiyns etsssvrtgf mvplenqngv sesaakspsk
      301 ilelmdgfra skalfvaskl kifdhlkdkg plkavniane igtsvcgter lldacaalgl
      361 lekttqgysn tdsantylts dgeyslygyi ihsndhlwpl ftnlesavke gsrqnhrafg
      421 kkaddlfkdy yhsqevtqrf maamhsiahl takdvatafd lsqfksacdl ggctgalahe
      481 lvriypnlkv tvfdlpevia ntsyfqpsgq htapvtfvsg dffkdslpea dlyilsrvlh
      541 dwpdekihll lskisalckp gcgillaemv lddekkkrst allqslnmlv qtegkersgs
      601 eyrglleqhg ltnvkirltg nlldvilcvk t
//
LOCUS       XP_053912682             575 aa            linear   VRT 09-MAR-2023
DEFINITION  probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase
            protein isoform X3 [Cuculus canorus].
ACCESSION   XP_053912682
VERSION     XP_053912682.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056707.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..575
                     /product="probable bifunctional dTTP/UTP
                     pyrophosphatase/methyltransferase protein isoform X3"
                     /calculated_mol_wt=63423
     Region          15..151
                     /region_name="Maf"
                     /note="Nucleotide binding protein Maf. Maf has been
                     implicated in inhibition of septum formation in
                     eukaryotes, bacteria and archaea, but homologs in
                     B.subtilis and S.cerevisiae are nonessential for cell
                     division. Maf has been predicted to be a nucleotide-
                     or...; cd00555"
                     /db_xref="CDD:238310"
     Site            order(19,24,44,65,88,100)
                     /site_type="active"
                     /db_xref="CDD:238310"
     Region          244..327
                     /region_name="dimerization2"
                     /note="dimerization domain; pfam16864"
                     /db_xref="CDD:465287"
     Region          344..551
                     /region_name="AdoMet_MTases"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); cl17173"
                     /db_xref="CDD:473071"
     Site            order(413..419,437..438,463..465,480)
                     /site_type="other"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]"
                     /db_xref="CDD:100107"
     CDS             1..575
                     /gene="ASMTL"
                     /coded_by="XM_054056707.1:71..1798"
                     /db_xref="GeneID:104063720"
ORIGIN      
        1 malnpvlgkl vskrvvlasa sprrqeilan vglrfevvps wfketlekss faapyeyame
       61 takqkaleva nrmhikhlrt pdvvigadti vtvdeqilek pvdkqdayrm lskdkaggyg
      121 iqalggmlve yvhgdflnvv gfplnhfckk laelyypplk hniqhkkyds ipsvdtfenl
      181 sdgesessns tehkdaskld ssgmysseai ynsetsssvr tgfmvplenq ngvsesaaks
      241 pskilelmdg fraskalfva sklkifdhlk dkgplkavni aneigtsvcg terlldacaa
      301 lgllekttqg ysntdsanty ltsdgeysly gyiihsndhl wplftnlesa vkegsrqnhr
      361 afgkkaddlf kdyyhsqevt qrfmaamhsi ahltakdvat afdlsqfksa cdlggctgal
      421 ahelvriypn lkvtvfdlpe viantsyfqp sgqhtapvtf vsgdffkdsl peadlyilsr
      481 vlhdwpdeki hlllskisal ckpgsallva eivldeqkth ppravlqsls mtegkqrsgs
      541 eykqllekyg ftnvqikitg nlldavlcik knlsf
//
LOCUS       XP_053912683             298 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP/ATP translocase 3 [Cuculus canorus].
ACCESSION   XP_053912683
VERSION     XP_053912683.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056708.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..298
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..298
                     /product="ADP/ATP translocase 3"
                     /calculated_mol_wt=32673
     Region          3..298
                     /region_name="PTZ00169"
                     /note="ADP/ATP transporter on adenylate translocase;
                     Provisional"
                     /db_xref="CDD:240302"
     CDS             1..298
                     /gene="SLC25A6"
                     /coded_by="XM_054056708.1:74..970"
                     /db_xref="GeneID:104063744"
ORIGIN      
        1 madqaisflk dflaggiaaa isktavapie rvklllqvqh askqiaadkq ykgiidcvvr
       61 ipkeqgvlsf wrgnlanvir yfptqalnfa fkdkykqvfl ggvdkhtqfw ryfagnlasg
      121 gaagatslcf vypldfartr laadvgkaga dreftglgdc likitksdgl rglyqgfnvs
      181 vqgiiiyraa yfgiydtakg mlpdprnthi viswmiaqtv tavagvvsyp fdtvrrrmmm
      241 qsgrkgadim ysgtidcwrk iardeggkaf fkgawsnvlr gmggafvlvl ydefkkii
//
LOCUS       XP_053912684             404 aa            linear   VRT 09-MAR-2023
DEFINITION  granulocyte-macrophage colony-stimulating factor receptor subunit
            alpha isoform X1 [Cuculus canorus].
ACCESSION   XP_053912684
VERSION     XP_053912684.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056709.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..404
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..404
                     /product="granulocyte-macrophage colony-stimulating factor
                     receptor subunit alpha isoform X1"
                     /calculated_mol_wt=46690
     Region          37..101
                     /region_name="IL3Ra_N"
                     /note="IL-3 receptor alpha chain N-terminal domain;
                     pfam18611"
                     /db_xref="CDD:436618"
     Region          124..217
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cl21522"
                     /db_xref="CDD:473895"
     Region          222..315
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     CDS             1..404
                     /gene="LOC104063743"
                     /coded_by="XM_054056709.1:898..2112"
                     /db_xref="GeneID:104063743"
ORIGIN      
        1 mfdnlrlvcl iswfmmllhh lyadlqctgs eaqdspirnv kmnwgtmels wetskkfsky
       61 kctimdreme tveeevsttl cqfpveqylp lhegvfltie vlntnisksc tfipegvngs
      121 aienfscviy nisfmnctwq agraapgdtq yflywqnsry ddavecelyi kdenernvgc
      181 rfqnvrintp iayflvngss ndsliqfydk yielykieil tpplnvtvnc tgdsvgcivt
      241 wqppitshge kknclqyeid iqnkdqpkee kkdrpvtvtt eryefqnyne kkkyilkira
      301 rgnnclassn wgewsqpvef grgkdyfvfv iffltalgti svtllqyclf krycslkgif
      361 ppipqprdkl nasaeediqv cflsfqsnll ainhnrpntr iidi
//
LOCUS       XP_053912685             401 aa            linear   VRT 09-MAR-2023
DEFINITION  granulocyte-macrophage colony-stimulating factor receptor subunit
            alpha isoform X2 [Cuculus canorus].
ACCESSION   XP_053912685
VERSION     XP_053912685.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056710.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..401
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..401
                     /product="granulocyte-macrophage colony-stimulating factor
                     receptor subunit alpha isoform X2"
                     /calculated_mol_wt=46341
     Region          37..101
                     /region_name="IL3Ra_N"
                     /note="IL-3 receptor alpha chain N-terminal domain;
                     pfam18611"
                     /db_xref="CDD:436618"
     Region          124..217
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cl21522"
                     /db_xref="CDD:473895"
     Region          222..315
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     CDS             1..401
                     /gene="LOC104063743"
                     /coded_by="XM_054056710.1:898..2103"
                     /db_xref="GeneID:104063743"
ORIGIN      
        1 mfdnlrlvcl iswfmmllhh lyadlqctgs eaqdspirnv kmnwgtmels wetskkfsky
       61 kctimdreme tveeevsttl cqfpveqylp lhegvfltie vlntnisksc tfipegvngs
      121 aienfscviy nisfmnctwq agraapgdtq yflywqnsry ddavecelyi kdenernvgc
      181 rfqnvrintp iayflvngss ndsliqfydk yielykieil tpplnvtvnc tgdsvgcivt
      241 wqppitshge kknclqyeid iqnkdqpkee kkdrpvtvtt eryefqnyne kkkyilkira
      301 rgnnclassn wgewsqpvef grgkdyfvfv iffltalgti svtllqyclf krycslkgif
      361 ppipqprdkl nasaeediqt envdlpkpsy teeitmveei i
//
LOCUS       XP_053912686             317 aa            linear   VRT 09-MAR-2023
DEFINITION  granulocyte-macrophage colony-stimulating factor receptor subunit
            alpha isoform X1 [Cuculus canorus].
ACCESSION   XP_053912686
VERSION     XP_053912686.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056711.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..317
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..317
                     /product="granulocyte-macrophage colony-stimulating factor
                     receptor subunit alpha isoform X1"
                     /calculated_mol_wt=36370
     Region          37..130
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cl21522"
                     /db_xref="CDD:473895"
     CDS             1..317
                     /gene="LOC104063742"
                     /coded_by="XM_054056711.1:532..1485"
                     /db_xref="GeneID:104063742"
ORIGIN      
        1 maspltlifv tqwillttql cvgwhcidcv ngsaienfsc viynisfmnc twqagraapg
       61 dtqyflywqn srydntmece iyikdengrn vgcrfqnvri dtekayflvn gsskdsliqf
      121 ydeyiqlyki eklmppsnit vhceeiqndc iiqwqppqin hsnkdkcfky einikykgnp
      181 egnskyisiq eggnshtfrr snmrkkyylk mraagsacfv spawgewsap vefgkediis
      241 fsawillvva vatllvaift ilfckrtgyw kaafpkipqp kklfcgltdt ypelmeskiq
      301 siisenedii livdvvk
//
LOCUS       XP_053912688             270 aa            linear   VRT 09-MAR-2023
DEFINITION  granulocyte-macrophage colony-stimulating factor receptor subunit
            alpha isoform X2 [Cuculus canorus].
ACCESSION   XP_053912688
VERSION     XP_053912688.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056713.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..270
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..270
                     /product="granulocyte-macrophage colony-stimulating factor
                     receptor subunit alpha isoform X2"
                     /calculated_mol_wt=31122
     Region          1..83
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cl21522"
                     /db_xref="CDD:473895"
     CDS             1..270
                     /gene="LOC104063742"
                     /coded_by="XM_054056713.1:580..1392"
                     /db_xref="GeneID:104063742"
ORIGIN      
        1 mnctwqagra apgdtqyfly wqnsrydntm eceiyikden grnvgcrfqn vridtekayf
       61 lvngsskdsl iqfydeyiql ykieklmpps nitvhceeiq ndciiqwqpp qinhsnkdkc
      121 fkyeinikyk gnpegnskyi siqeggnsht frrsnmrkky ylkmraagsa cfvspawgew
      181 sapvefgked iisfsawill vvavatllva iftilfckrt gywkaafpki pqpkklfcgl
      241 tdtypelmes kiqsiisene diilivdvvk
//
LOCUS       XP_053912689            1023 aa            linear   VRT 09-MAR-2023
DEFINITION  SLIT and NTRK-like protein 5 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912689
VERSION     XP_053912689.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056714.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1023
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1023
                     /product="SLIT and NTRK-like protein 5 isoform X1"
                     /calculated_mol_wt=112830
     Region          132..149
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          153..176
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <156..>305
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          177..200
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          201..224
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          225..248
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          249..270
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          272..296
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          305..>343
                     /region_name="LRRCT"
                     /note="Leucine rich repeat C-terminal domain; smart00082"
                     /db_xref="CDD:214507"
     Region          <503..>633
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          503..563
                     /region_name="LRR_8"
                     /note="Leucine rich repeat; pfam13855"
                     /db_xref="CDD:404697"
     Region          505..528
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          529..552
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          553..572
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          600..624
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          625..637
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          633..>670
                     /region_name="LRRCT"
                     /note="Leucine rich repeat C-terminal domain; smart00082"
                     /db_xref="CDD:214507"
     CDS             1..1023
                     /gene="SLITRK5"
                     /coded_by="XM_054056714.1:93..3164"
                     /db_xref="GeneID:104067224"
ORIGIN      
        1 mcarpcasag asappacggg vsvraphqas paaeilasap aaprsaraag rnlhglppcl
       61 gpgdfgrrnk myaccstvtl eqdlnkkmhi wmlqtiafal tslvlswaes ieyygeicdn
      121 acpceekdsi ltvscenrgi islfeisppr fpvyhlllsg nllnrlypnq fvnytgasil
      181 hlgsndiqdi etgafhglrg lrrlhlnnnk lellrddtfl glesleylqv dynyisviep
      241 nafsklhllq vlilndnlls slpnnlfrfv plthldlrgn rlkllpyvgl lqhmdkvvel
      301 qleenpwncs celialkdwl dsisysalvg dvvcetpfrl hgrdldevsk qelcprrlil
      361 dyemrpqtpl sttgyfhttp asvnsvatss savyksplkp pkgtrqpnkt rvrptsrlps
      421 kdlgysnygp siayqtkspv plecptactc nlqisdlgln vncqerkies iselqpkpyn
      481 pkkmylteny ialvrradfv datgldllhl gnnrisviqd rafgdltnlr rlylngnrie
      541 rlspelfygl qslqylflqy nvireieagt fepvpnlqll flnnnllrsl pgnifsglsl
      601 yrlslrsnhf sylpvsgvld qlksllqidl henpwdctcd vvgmklwleq lntgvlvdqv
      661 icespkkfaq ndmravrvel lcpdysdivv stptpspgql parttspsat vrlngtaaag
      721 gstgggssvp lsvlilslll vfimsvfvaa glfvlvmkrr kkgqgdhasa nnsdvssfnm
      781 qysvyggghh hhhhhphlqq hpphrggggs aalpkvktpa ghvyeyiphp lghmcknpiy
      841 rsregnaged ykdlhelkvt ygahplqpgg gtappppppp ppppapggee aparspaysv
      901 stiepreell spgqdadrfy rgilepdkhs pssalgtpgs alpeypklpa aytyspnydl
      961 rrahqylhpg pgdgrlretv lysppstvyv epnrneylel kaklnaepdy levlekqttf
     1021 sqf
//
LOCUS       XP_053912690             953 aa            linear   VRT 09-MAR-2023
DEFINITION  SLIT and NTRK-like protein 5 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912690
VERSION     XP_053912690.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056715.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..953
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..953
                     /product="SLIT and NTRK-like protein 5 isoform X2"
                     /calculated_mol_wt=106063
     Region          62..79
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          83..106
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <86..>235
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          107..130
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          131..154
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          155..178
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          179..200
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          202..226
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          235..>273
                     /region_name="LRRCT"
                     /note="Leucine rich repeat C-terminal domain; smart00082"
                     /db_xref="CDD:214507"
     Region          <433..>563
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          433..493
                     /region_name="LRR_8"
                     /note="Leucine rich repeat; pfam13855"
                     /db_xref="CDD:404697"
     Region          435..458
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          459..482
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          483..502
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          530..554
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          555..567
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          563..>600
                     /region_name="LRRCT"
                     /note="Leucine rich repeat C-terminal domain; smart00082"
                     /db_xref="CDD:214507"
     CDS             1..953
                     /gene="SLITRK5"
                     /coded_by="XM_054056715.1:940..3801"
                     /db_xref="GeneID:104067224"
ORIGIN      
        1 myaccstvtl eqdlnkkmhi wmlqtiafal tslvlswaes ieyygeicdn acpceekdsi
       61 ltvscenrgi islfeisppr fpvyhlllsg nllnrlypnq fvnytgasil hlgsndiqdi
      121 etgafhglrg lrrlhlnnnk lellrddtfl glesleylqv dynyisviep nafsklhllq
      181 vlilndnlls slpnnlfrfv plthldlrgn rlkllpyvgl lqhmdkvvel qleenpwncs
      241 celialkdwl dsisysalvg dvvcetpfrl hgrdldevsk qelcprrlil dyemrpqtpl
      301 sttgyfhttp asvnsvatss savyksplkp pkgtrqpnkt rvrptsrlps kdlgysnygp
      361 siayqtkspv plecptactc nlqisdlgln vncqerkies iselqpkpyn pkkmylteny
      421 ialvrradfv datgldllhl gnnrisviqd rafgdltnlr rlylngnrie rlspelfygl
      481 qslqylflqy nvireieagt fepvpnlqll flnnnllrsl pgnifsglsl yrlslrsnhf
      541 sylpvsgvld qlksllqidl henpwdctcd vvgmklwleq lntgvlvdqv icespkkfaq
      601 ndmravrvel lcpdysdivv stptpspgql parttspsat vrlngtaaag gstgggssvp
      661 lsvlilslll vfimsvfvaa glfvlvmkrr kkgqgdhasa nnsdvssfnm qysvyggghh
      721 hhhhhphlqq hpphrggggs aalpkvktpa ghvyeyiphp lghmcknpiy rsregnaged
      781 ykdlhelkvt ygahplqpgg gtappppppp ppppapggee aparspaysv stiepreell
      841 spgqdadrfy rgilepdkhs pssalgtpgs alpeypklpa aytyspnydl rrahqylhpg
      901 pgdgrlretv lysppstvyv epnrneylel kaklnaepdy levlekqttf sqf
//
LOCUS       XP_053912691             953 aa            linear   VRT 09-MAR-2023
DEFINITION  SLIT and NTRK-like protein 5 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912691
VERSION     XP_053912691.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056716.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..953
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..953
                     /product="SLIT and NTRK-like protein 5 isoform X2"
                     /calculated_mol_wt=106063
     Region          62..79
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          83..106
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <86..>235
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          107..130
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          131..154
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          155..178
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          179..200
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          202..226
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          235..>273
                     /region_name="LRRCT"
                     /note="Leucine rich repeat C-terminal domain; smart00082"
                     /db_xref="CDD:214507"
     Region          <433..>563
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          433..493
                     /region_name="LRR_8"
                     /note="Leucine rich repeat; pfam13855"
                     /db_xref="CDD:404697"
     Region          435..458
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          459..482
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          483..502
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          530..554
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          555..567
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          563..>600
                     /region_name="LRRCT"
                     /note="Leucine rich repeat C-terminal domain; smart00082"
                     /db_xref="CDD:214507"
     CDS             1..953
                     /gene="SLITRK5"
                     /coded_by="XM_054056716.1:350..3211"
                     /db_xref="GeneID:104067224"
ORIGIN      
        1 myaccstvtl eqdlnkkmhi wmlqtiafal tslvlswaes ieyygeicdn acpceekdsi
       61 ltvscenrgi islfeisppr fpvyhlllsg nllnrlypnq fvnytgasil hlgsndiqdi
      121 etgafhglrg lrrlhlnnnk lellrddtfl glesleylqv dynyisviep nafsklhllq
      181 vlilndnlls slpnnlfrfv plthldlrgn rlkllpyvgl lqhmdkvvel qleenpwncs
      241 celialkdwl dsisysalvg dvvcetpfrl hgrdldevsk qelcprrlil dyemrpqtpl
      301 sttgyfhttp asvnsvatss savyksplkp pkgtrqpnkt rvrptsrlps kdlgysnygp
      361 siayqtkspv plecptactc nlqisdlgln vncqerkies iselqpkpyn pkkmylteny
      421 ialvrradfv datgldllhl gnnrisviqd rafgdltnlr rlylngnrie rlspelfygl
      481 qslqylflqy nvireieagt fepvpnlqll flnnnllrsl pgnifsglsl yrlslrsnhf
      541 sylpvsgvld qlksllqidl henpwdctcd vvgmklwleq lntgvlvdqv icespkkfaq
      601 ndmravrvel lcpdysdivv stptpspgql parttspsat vrlngtaaag gstgggssvp
      661 lsvlilslll vfimsvfvaa glfvlvmkrr kkgqgdhasa nnsdvssfnm qysvyggghh
      721 hhhhhphlqq hpphrggggs aalpkvktpa ghvyeyiphp lghmcknpiy rsregnaged
      781 ykdlhelkvt ygahplqpgg gtappppppp ppppapggee aparspaysv stiepreell
      841 spgqdadrfy rgilepdkhs pssalgtpgs alpeypklpa aytyspnydl rrahqylhpg
      901 pgdgrlretv lysppstvyv epnrneylel kaklnaepdy levlekqttf sqf
//
LOCUS       XP_053912692             953 aa            linear   VRT 09-MAR-2023
DEFINITION  SLIT and NTRK-like protein 5 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912692
VERSION     XP_053912692.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056717.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..953
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..953
                     /product="SLIT and NTRK-like protein 5 isoform X2"
                     /calculated_mol_wt=106063
     Region          62..79
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          83..106
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <86..>235
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          107..130
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          131..154
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          155..178
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          179..200
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          202..226
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          235..>273
                     /region_name="LRRCT"
                     /note="Leucine rich repeat C-terminal domain; smart00082"
                     /db_xref="CDD:214507"
     Region          <433..>563
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          433..493
                     /region_name="LRR_8"
                     /note="Leucine rich repeat; pfam13855"
                     /db_xref="CDD:404697"
     Region          435..458
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          459..482
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          483..502
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          530..554
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          555..567
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          563..>600
                     /region_name="LRRCT"
                     /note="Leucine rich repeat C-terminal domain; smart00082"
                     /db_xref="CDD:214507"
     CDS             1..953
                     /gene="SLITRK5"
                     /coded_by="XM_054056717.1:237..3098"
                     /db_xref="GeneID:104067224"
ORIGIN      
        1 myaccstvtl eqdlnkkmhi wmlqtiafal tslvlswaes ieyygeicdn acpceekdsi
       61 ltvscenrgi islfeisppr fpvyhlllsg nllnrlypnq fvnytgasil hlgsndiqdi
      121 etgafhglrg lrrlhlnnnk lellrddtfl glesleylqv dynyisviep nafsklhllq
      181 vlilndnlls slpnnlfrfv plthldlrgn rlkllpyvgl lqhmdkvvel qleenpwncs
      241 celialkdwl dsisysalvg dvvcetpfrl hgrdldevsk qelcprrlil dyemrpqtpl
      301 sttgyfhttp asvnsvatss savyksplkp pkgtrqpnkt rvrptsrlps kdlgysnygp
      361 siayqtkspv plecptactc nlqisdlgln vncqerkies iselqpkpyn pkkmylteny
      421 ialvrradfv datgldllhl gnnrisviqd rafgdltnlr rlylngnrie rlspelfygl
      481 qslqylflqy nvireieagt fepvpnlqll flnnnllrsl pgnifsglsl yrlslrsnhf
      541 sylpvsgvld qlksllqidl henpwdctcd vvgmklwleq lntgvlvdqv icespkkfaq
      601 ndmravrvel lcpdysdivv stptpspgql parttspsat vrlngtaaag gstgggssvp
      661 lsvlilslll vfimsvfvaa glfvlvmkrr kkgqgdhasa nnsdvssfnm qysvyggghh
      721 hhhhhphlqq hpphrggggs aalpkvktpa ghvyeyiphp lghmcknpiy rsregnaged
      781 ykdlhelkvt ygahplqpgg gtappppppp ppppapggee aparspaysv stiepreell
      841 spgqdadrfy rgilepdkhs pssalgtpgs alpeypklpa aytyspnydl rrahqylhpg
      901 pgdgrlretv lysppstvyv epnrneylel kaklnaepdy levlekqttf sqf
//
LOCUS       XP_053912693            3383 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphatidylinositol phosphatase PTPRQ [Cuculus canorus].
ACCESSION   XP_053912693
VERSION     XP_053912693.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056718.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3383
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..3383
                     /product="phosphatidylinositol phosphatase PTPRQ"
                     /calculated_mol_wt=378326
     Region          195..325
                     /region_name="CLECT"
                     /note="C-type lectin (CTL) or carbohydrate-recognition
                     domain (CRD); smart00034"
                     /db_xref="CDD:214480"
     Site            order(295,299,301,310,312..315,318..320)
                     /site_type="other"
                     /note="ligand binding surface [chemical binding]"
                     /db_xref="CDD:153057"
     Region          424..504
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; smart00060"
                     /db_xref="CDD:214495"
     Site            order(424,489,504)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(505,507,509..510)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <648..>872
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          697..767
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Region          882..>1242
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          1133..1227
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1133,1200,1215)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Region          <1179..1619
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Site            order(1216..1217,1219..1220)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          1560..2067
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          2086..2706
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          2727..2816
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Region          2848..3006
                     /region_name="UP_III_II"
                     /note="Uroplakin IIIb, IIIa and II; cl06408"
                     /db_xref="CDD:471435"
     Region          3115..3338
                     /region_name="R-PTPc-Q"
                     /note="catalytic domain of receptor-type tyrosine-protein
                     phosphatase Q; cd14616"
                     /db_xref="CDD:350464"
     CDS             1..3383
                     /gene="PTPRQ"
                     /coded_by="XM_054056718.1:64..10215"
                     /db_xref="GeneID:104061150"
ORIGIN      
        1 mdqailflll lkylikgses ldcdqvkkpa rlvsmtwtef pkgedpdyyi vtyqcadaln
       61 qknvrniskv eqkpvsttil leenkqydit veslkngqii svksfktrgv sendiktfvt
      121 tttvsfnwnt iskefsvsvs qngtsqiikn pdgffvwsnl tpatlytfkf vfeqshlefm
      181 nvsqsldiqa etgtcsqgwv afqsscyqmi reskpwkmaq qicetssrgg hlldigseee
      241 hvfissylqk fsqmimlwtg lndlkeerrl lwtdetpyll kadiatlsmi pendtdcyal
      301 qrdptgpgyf ftgffcyiql pyiceyelpv vpenftfgvs dvkateaafm wsdvdiwlkp
      361 gfaliikyyf dqwkpfilsl pvnttqtkim qlspgfcysf llaarnsega qavlspilki
      421 etrplrsqkl eatyvssaei hlqwkppqls ssasfhhyli nildtethiq dlllveksks
      481 sivvenvkpy hqyqvylqnv aekgtlsche epilittavs pptavcihpe diqeesvilh
      541 wklpqeiqes yiqvkpdani gdtmkilvkn reefkinlli pgmtyeivas vkngnmselk
      601 tiqctlkpkp vqivvpyely sntvilfvhv sdigvfdgiy iaskggpnat filksdgkit
      661 ienltagtey dfyvatisgk mlssfyllsg vktclaapln vregnttdts iqvtwdradg
      721 dfhqyevtci ncasafrvqk vkqetatfsn ltpgklynft irtekegfkd sifvtkqiet
      781 apsavkflny srdsesvtvt wtlaqntfdg yvlsidsnif nmekmlpsdv rmykfesllp
      841 gtdflisivt tnglkrshpt ilkistypdp psdlqvfgqe enavyfswkl pkggfdmfqi
      901 syslindekl larnvydsra vvknlapgte yffrlrtvka ldssvaverk vitkpagicg
      961 lsikmvntss atlmwnptkt nftsykatls nttlmnkfmi paalsdfsvt dltagsiynf
     1021 tlqrlignte gasafieivt epakpeglkf fnvssyyfsl ywrlpyghad rfhvdlipah
     1081 gsvvildlgv keyqadfsnt ipgttynvtv savsssvyss pasrtvttnv tnpgppvfla
     1141 gervgsagil lswnmplhpn grilsyivky kevcpwmqia ytqvttkpds levlltslnp
     1201 gttyeikvaa ensagvgvfs dpflfqtaes apgkvvnltv ealnysavnl iwflprqpng
     1261 ritsfkisvk harsgivvkd vlvkvedlls grlpecndns esflwstttp sttfgkstip
     1321 srttvapste apdqmssvwn episfvitnl rpyttylfev savtteagyi dsaivrtpes
     1381 vpedppqnfa ksnitaksfs vtwdpptivt gklsyrvely gpfghildns tkdhkfvfss
     1441 lvpfttyhvy vgaetsagvg pktsltvftp advpgavsdl hvaeveatyi kivwrkpqqp
     1501 ngiitqyrik vdvqetemtl eniifegkyk ysidslepym itenikpspt wnsvetvnel
     1561 yegsaempss iqtaspvift svdgdnlpai negaelhldn qyainilaee lsyvikglvp
     1621 ftdytisvsa ftavgegpps vlrvrtceqv pssvqnisyk nissssvlly wdppanpngk
     1681 iihytvyame ldtkrafhit ssnnsllmtg lkkytnykmr vaasttiges alseendvfv
     1741 rtpedepdsp pqnvelinkt ateinlrwlp peqpnglith yevlysdcnd lfiknassas
     1801 illsemkpyt lynisvkaft rlghgnqsss pllvrtsetv pdsapenity rnissteiel
     1861 affppsipng iirtytiylk rsngteqrvi nttflmlrit dlkkyteytv evsastamge
     1921 glcsaplyil tdedapsspp eslsvkqlsg vtvklswkpp lepngiilyy tvyvwnkmse
     1981 rsinvtetsl qftdlennce ysayltastr fgdgniksdt itfttsegap sdppkdvmyr
     2041 nltstsiilf wsppqkpngn iryysvylkn nsgifiqnvt tygndsdvsm pqsavledla
     2101 kyshyslwlt astafgdgnk tseiidvytd qdfpdgsven lvyqnissss vnvswlppsq
     2161 pnglvffhvs lrllqpgtnk ilslltynts iifdslekyt dyilkitpat dkgsselhal
     2221 slhirtdedv pesppiiktf snlsttsvml swdppvkpcg iiisydlnlf gpernisfst
     2281 innfiiledl lpftlysiya aartikgpgp samllfytde svplvppqnl tiinytadsv
     2341 wlkwdpspqp ngvimrynfk iyqnnteklf yqnisgskhe anldglepfs pyfisvsaft
     2401 klgngdqfsn avqfttmesv pdavrnvhci gmswqsilvq wnppassngv ithyiitveg
     2461 nstyfssydt lhtfrnllsn vtyqfkikaa tsagygeeqi cnastlpekv psaprdivfs
     2521 nvqstsvtln wrspksilgy fqnykittql qsihcndwet kecieyemhq ylyenmaddw
     2581 ieetvyglkk yrwyrfavaa stnvgygsss pwistqtlpg spdgppenvt vlatsphsin
     2641 iswsepviit gptcylidit svdndnykaq flktndegkv leisdlkaft rysvviiaft
     2701 gdvnaalmeg kasspvivst feavpedppn nitfqkipde vtkfqvtfvp psepngniqv
     2761 yqamvynedd pdaiqihnls vigktdqsvt amieglkggn tynvsvyain gagagpkiql
     2821 kitmdikepp rpkkkpapvy dtngallvtd ttitirmpic yysddhgpik kiqvlvveag
     2881 aqhdgnvtmw ydayfnrprp yftnegfpnp pciegkedls skeeiyviga datcmitgsq
     2941 dkicngplkp rkqylfkfra tnvkgqftds dysdpvktlg egpsgrsvev ilavtlcils
     3001 vvllvaavya farirqkqke ggtysprdae iidtkfkldq litvadlelk derftrllsy
     3061 rksikpiskk sflqhveelc tnnnlkfqee fselpkfled lastdadlpw nksknrfpni
     3121 kpynnnrvkl mpdagvpgsd yinasyvsgy lcpnefiatq gplpgtvgdf wrmvwetrak
     3181 tlvmltqcfe kgrirchqyw pednkpvtvf gdivitklme dtqmdwtird lkierhgdym
     3241 mvrqcnftsw pehgvpetta piihfvklir asrahdntpm vvhcsagvgr tgvyialdhl
     3301 tqhvndhdfv diyglvaelr rermcmvqnl aqyiflhqcv ldlltskgss qnicfvnysa
     3361 lqkmdsldam egdvelewee ttm
//
LOCUS       XP_053912694             358 aa            linear   VRT 09-MAR-2023
DEFINITION  trophoblast glycoprotein-like [Cuculus canorus].
ACCESSION   XP_053912694
VERSION     XP_053912694.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056719.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..358
                     /product="trophoblast glycoprotein-like"
                     /calculated_mol_wt=38657
     Region          68..91
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <111..>230
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          118..141
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          142..168
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          169..189
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          191..212
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          227..279
                     /region_name="LRRCT"
                     /note="Leucine rich repeat C-terminal domain; smart00082"
                     /db_xref="CDD:214507"
     CDS             1..358
                     /gene="TPBGL"
                     /coded_by="XM_054056719.1:22..1098"
                     /db_xref="GeneID:128850972"
ORIGIN      
        1 marggeragr cggrwlpwlg lallplavpp aaapagcpaa cycvttpelv qcryerleel
       61 prelpvtvrn lsiagsnlsa lpraafaarp lpelrllrlh sdniqvvedm alqglpalht
      121 ldlshnplls vapgafsgap llrtlqlnqa llaapleeql alavrnlslr rlelggnalr
      181 alptallpag leeldlrnns lqrltaaelr sldapglrgl rltlganpls cdcalrpfla
      241 wlrattarvp darslrcsgp splrgtallr lrpdglvctg segsepgqle tasyvffgiv
      301 laligivflm vlylnrrgik rwlhnlreac rdqmegyhyr yeqdadprrt savstpgl
//
LOCUS       XP_053912695             566 aa            linear   VRT 09-MAR-2023
DEFINITION  SLAIN motif-containing protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912695
VERSION     XP_053912695.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056720.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..566
                     /product="SLAIN motif-containing protein 1 isoform X1"
                     /calculated_mol_wt=61139
     Region          127..566
                     /region_name="SLAIN"
                     /note="SLAIN motif-containing family; pfam15301"
                     /db_xref="CDD:464627"
     CDS             1..566
                     /gene="SLAIN1"
                     /coded_by="XM_054056720.1:190..1890"
                     /db_xref="GeneID:104062986"
ORIGIN      
        1 meaallkpam maevkggsgg gvpsaelevk klqelvrkle kqneqlrsra aavpaaphll
       61 lppasppspp hallcppepl ayfkpspglp aggqqdgggg aaaatvldev avleledggc
      121 gqdedtwlyv sptktlapqe kslstlqccr rvldhpspei eaakrslcfr leqanrwrnl
      181 fstpvslafp yspvarltpf tngfnspsfs ktssktiltp ertgyisrss plspqssids
      241 elstseledd sismgyklqd ltdvqimarl qeeslrqdya stsasvsrhs ssvslhtgkk
      301 gmcgdqeydr ysledeeefd hlpppqprlt rcspfqrgip hsqtfssmrd crrsptsphf
      361 psntyqqpyy spqaqtpeqq pnringdklr rsmpnlarmp ttptissntg fasspvtvrn
      421 sqsfdsslhg asngisrmqs cipspgqlqh rvhsvghfpm svrqplkata yvsptvqgss
      481 nssssssipv snnlqvysnt gipmpnktas qgivgrsalp rpslaingsg iprskiaqpv
      541 rsflqppkpl sslstmrdgs wrdgcy
//
LOCUS       XP_053912697             516 aa            linear   VRT 09-MAR-2023
DEFINITION  SLAIN motif-containing protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912697
VERSION     XP_053912697.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056722.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..516
                     /product="SLAIN motif-containing protein 1 isoform X2"
                     /calculated_mol_wt=55566
     Region          127..516
                     /region_name="SLAIN"
                     /note="SLAIN motif-containing family; pfam15301"
                     /db_xref="CDD:464627"
     CDS             1..516
                     /gene="SLAIN1"
                     /coded_by="XM_054056722.1:192..1742"
                     /db_xref="GeneID:104062986"
ORIGIN      
        1 meaallkpam maevkggsgg gvpsaelevk klqelvrkle kqneqlrsra aavpaaphll
       61 lppasppspp hallcppepl ayfkpspglp aggqqdgggg aaaatvldev avleledggc
      121 gqdedtwlyv sptktlapqe kslstlqccr rvldhpspei eaakrslcfr leqgyisrss
      181 plspqssids elstseledd sismgyklqd ltdvqimarl qeeslrqdya stsasvsrhs
      241 ssvslhtgkk gmcgdqeydr ysledeeefd hlpppqprlt rcspfqrgip hsqtfssmrd
      301 crrsptsphf psntyqqpyy spqaqtpeqq pnringdklr rsmpnlarmp ttptissntg
      361 fasspvtvrn sqsfdsslhg asngisrmqs cipspgqlqh rvhsvghfpm svrqplkata
      421 yvsptvqgss nssssssipv snnlqvysnt gipmpnktas qgivgrsalp rpslaingsg
      481 iprskiaqpv rsflqppkpl sslstmrdgs wrdgcy
//
LOCUS       XP_053912698             158 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein C11orf87 homolog isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912698
VERSION     XP_053912698.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056723.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..158
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..158
                     /product="uncharacterized protein C11orf87 homolog isoform
                     X1"
                     /calculated_mol_wt=17216
     CDS             1..158
                     /gene="C1H11orf87"
                     /coded_by="XM_054056723.1:293..769"
                     /db_xref="GeneID:104055334"
ORIGIN      
        1 msaklskelr lslppcilnk tsatlntsst citqvgqlfq sfsstlvliv lvtlifclil
       61 lslttfhihk rkmkkrkmqk aqeeyerdhc trssnsgsqh pvmgvqgeap qgrdirlgrp
      121 pqdseiqrps pseapssqqa racldtagag llqtvils
//
LOCUS       XP_053912699             158 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein C11orf87 homolog isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912699
VERSION     XP_053912699.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056724.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..158
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..158
                     /product="uncharacterized protein C11orf87 homolog isoform
                     X1"
                     /calculated_mol_wt=17216
     CDS             1..158
                     /gene="C1H11orf87"
                     /coded_by="XM_054056724.1:296..772"
                     /db_xref="GeneID:104055334"
ORIGIN      
        1 msaklskelr lslppcilnk tsatlntsst citqvgqlfq sfsstlvliv lvtlifclil
       61 lslttfhihk rkmkkrkmqk aqeeyerdhc trssnsgsqh pvmgvqgeap qgrdirlgrp
      121 pqdseiqrps pseapssqqa racldtagag llqtvils
//
LOCUS       XP_053912700             118 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein C11orf87 homolog isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912700
VERSION     XP_053912700.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056725.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..118
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..118
                     /product="uncharacterized protein C11orf87 homolog isoform
                     X2"
                     /calculated_mol_wt=11844
     CDS             1..118
                     /gene="C1H11orf87"
                     /coded_by="XM_054056725.1:13..369"
                     /db_xref="GeneID:104055334"
ORIGIN      
        1 mlsgctedag dnagstdare pragpppppe prgsagrrra gltspagaai gcgrrspkrr
       61 rlrsprslra aaalsargar allaasgpqa alvtlelsrq hpghfqaapa sspalvei
//
LOCUS       XP_053912701             701 aa            linear   VRT 09-MAR-2023
DEFINITION  F-box only protein 40 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912701
VERSION     XP_053912701.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056726.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..701
                     /product="F-box only protein 40 isoform X1"
                     /calculated_mol_wt=78989
     Region          14..105
                     /region_name="zf-TRAF_2"
                     /note="TRAF-like zinc-finger; pfam15965"
                     /db_xref="CDD:464957"
     Region          567..682
                     /region_name="F-box_4"
                     /note="pfam15966"
                     /db_xref="CDD:464958"
     CDS             1..701
                     /gene="FBXO40"
                     /coded_by="XM_054056726.1:106..2211"
                     /db_xref="GeneID:104064409"
ORIGIN      
        1 mikrraqkap pgqhrhcerc fnrhcrapie psiscmvisc rlhcgatfhm ckeeehqllc
       61 pleqvtclns aygcpfsmar fklakhlqvc pasvvccsme wnrwpnvdsd ttlhknimke
      121 tlneecldta lalrdqkilf rtlkiadlfp ewrkknevee lmdeamdgee gavggvvsgs
      181 qdsdnklsel sqreredlak dkegmdlgsy ktwenifske llacqvtgst antgknteea
      241 skktasapha asstekakev penaeeaknq kpeqvtpnte mtglapwqeg vlerlkkevg
      301 vgdynmylvh hggmlirfgq laactpkekd fvygnleaqe vktvytfkvp vsycgkrarl
      361 gdalghkipt ldksvdtsel ginleelpka nivratllca lekelkghei seargvdglf
      421 vdfatqtysf pldpfpsnav ladildeess pelhvelyte cvtrrhnkss saftftcshf
      481 frrdefpshf knvhadiqsc ldgwfqhrcp laylgctfvq nhfrpdglka kviyskplkt
      541 faikpevdtl laesgkcist vanrgrntds lsslpvevlk yiagfldsfs lsqlsqvsvl
      601 mrdicatllq ergmvllvwe kkryshggts wkarkkiwqf sslfsrvnkw qrndvacmse
      661 hlkncpfyqv ehrtdpvllt gmcesreqtq ktlvstfkrr v
//
LOCUS       XP_053912702             666 aa            linear   VRT 09-MAR-2023
DEFINITION  F-box only protein 40 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912702
VERSION     XP_053912702.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056727.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..666
                     /product="F-box only protein 40 isoform X2"
                     /calculated_mol_wt=74892
     Region          <1..70
                     /region_name="zf-TRAF_2"
                     /note="TRAF-like zinc-finger; pfam15965"
                     /db_xref="CDD:464957"
     Region          532..647
                     /region_name="F-box_4"
                     /note="pfam15966"
                     /db_xref="CDD:464958"
     CDS             1..666
                     /gene="FBXO40"
                     /coded_by="XM_054056727.1:293..2293"
                     /db_xref="GeneID:104064409"
ORIGIN      
        1 mviscrlhcg atfhmckeee hqllcpleqv tclnsaygcp fsmarfklak hlqvcpasvv
       61 ccsmewnrwp nvdsdttlhk nimketlnee cldtalalrd qkilfrtlki adlfpewrkk
      121 neveelmdea mdgeegavgg vvsgsqdsdn klselsqrer edlakdkegm dlgsyktwen
      181 ifskellacq vtgstantgk nteeaskkta saphaasste kakevpenae eaknqkpeqv
      241 tpntemtgla pwqegvlerl kkevgvgdyn mylvhhggml irfgqlaact pkekdfvygn
      301 leaqevktvy tfkvpvsycg krarlgdalg hkiptldksv dtselginle elpkanivra
      361 tllcalekel kgheisearg vdglfvdfat qtysfpldpf psnavladil deesspelhv
      421 elytecvtrr hnksssaftf tcshffrrde fpshfknvha diqscldgwf qhrcplaylg
      481 ctfvqnhfrp dglkakviys kplktfaikp evdtllaesg kcistvanrg rntdslsslp
      541 vevlkyiagf ldsfslsqls qvsvlmrdic atllqergmv llvwekkrys hggtswkark
      601 kiwqfsslfs rvnkwqrndv acmsehlknc pfyqvehrtd pvlltgmces reqtqktlvs
      661 tfkrrv
//
LOCUS       XP_009566692             352 aa            linear   VRT 09-MAR-2023
DEFINITION  beta-1,3-N-acetylglucosaminyltransferase manic fringe [Cuculus
            canorus].
ACCESSION   XP_009566692
VERSION     XP_009566692.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568397.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..352
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..352
                     /product="beta-1,3-N-acetylglucosaminyltransferase manic
                     fringe"
                     /calculated_mol_wt=39310
     Region          82..331
                     /region_name="Fringe"
                     /note="Fringe-like; pfam02434"
                     /db_xref="CDD:367085"
     CDS             1..352
                     /gene="MFNG"
                     /coded_by="XM_009568397.2:583..1641"
                     /db_xref="GeneID:104065868"
ORIGIN      
        1 mgnrfirgls gaaiflvsva llsvrhhetl etarypdlsk gmsekpgqrs kaspedatgg
       61 mgrgqkdlqv hplegykteg sltlgdifia vkttkrfhqs rmellldtwi sqareqtyvf
      121 tdeedealrr rmgdhaiftn csaehshpal sckmaaefda flasgrswfc hldddnylnp
      181 hallkllssy saswdiylgk pslnrpiras emlpnnqtkp vrfwfatgga gfcisrklas
      241 kmvpwasgrn flstselirl pddctvgyii eckvggqllp salfhshlen lqliplsrls
      301 qqvtlsygvf enklnviels gpfspqedps rfrslhchly pdtswclqav sw
//
LOCUS       XP_053912703             454 aa            linear   VRT 09-MAR-2023
DEFINITION  sushi repeat-containing protein SRPX isoform X1 [Cuculus canorus].
ACCESSION   XP_053912703
VERSION     XP_053912703.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056728.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..454
                     /product="sushi repeat-containing protein SRPX isoform X1"
                     /calculated_mol_wt=50749
     Region          50..104
                     /region_name="CCP"
                     /note="Domain abundant in complement control proteins;
                     SUSHI repeat; short complement-like repeat (SCR);
                     smart00032"
                     /db_xref="CDD:214478"
     Site            order(57,81)
                     /site_type="active"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     Region          111..166
                     /region_name="CCP"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     cd00033"
                     /db_xref="CDD:153056"
     Site            order(121,139)
                     /site_type="active"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     Region          167..248
                     /region_name="HYR"
                     /note="HYR domain; pfam02494"
                     /db_xref="CDD:460572"
     Region          253..308
                     /region_name="CCP"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     cd00033"
                     /db_xref="CDD:153056"
     Site            order(263,282)
                     /site_type="active"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     Region          323..442
                     /region_name="DUF4174"
                     /note="Domain of unknown function (DUF4174); pfam13778"
                     /db_xref="CDD:463980"
     CDS             1..454
                     /gene="SRPX"
                     /coded_by="XM_054056728.1:17..1381"
                     /db_xref="GeneID:104057417"
ORIGIN      
        1 mgrcwlrlaa llalaagpsl qdegsgyspl eddedvyahn ryketpwcsp ikvkhgyanc
       61 rtphgqyykn vlgtrcdirc qkgyelhgpp qlicqsskrw sgkvlckqkr cptlsmptng
      121 gfkcldgayf gsrceyycsp gyqlkgdriv tcmdnkiwsg rpascidtep priqcpsvke
      181 ktaepnklta rvfwdtpegr dtadgiltdv ilkglppgsh fpegdhkiqy tvydraenkg
      241 tckflvkvrv rrceklnapd ngyikcsgdg nnygatceff ctggyelqgs parvcqynlg
      301 wsgmeptcap mninvnvrta aalldqfyek rrlliistpt aanffyrmql gmlqpaqcgl
      361 dlrhvtvvel vgvfpaqigr igvkllppsl alqlrlllri phynfnimvm dkhgmdkery
      421 pfpatpaeif alidnfplrk eemklqaesg qscp
//
LOCUS       XP_053912705             454 aa            linear   VRT 09-MAR-2023
DEFINITION  sushi repeat-containing protein SRPX isoform X1 [Cuculus canorus].
ACCESSION   XP_053912705
VERSION     XP_053912705.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056730.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..454
                     /product="sushi repeat-containing protein SRPX isoform X1"
                     /calculated_mol_wt=50749
     Region          50..104
                     /region_name="CCP"
                     /note="Domain abundant in complement control proteins;
                     SUSHI repeat; short complement-like repeat (SCR);
                     smart00032"
                     /db_xref="CDD:214478"
     Site            order(57,81)
                     /site_type="active"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     Region          111..166
                     /region_name="CCP"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     cd00033"
                     /db_xref="CDD:153056"
     Site            order(121,139)
                     /site_type="active"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     Region          167..248
                     /region_name="HYR"
                     /note="HYR domain; pfam02494"
                     /db_xref="CDD:460572"
     Region          253..308
                     /region_name="CCP"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     cd00033"
                     /db_xref="CDD:153056"
     Site            order(263,282)
                     /site_type="active"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     Region          323..442
                     /region_name="DUF4174"
                     /note="Domain of unknown function (DUF4174); pfam13778"
                     /db_xref="CDD:463980"
     CDS             1..454
                     /gene="SRPX"
                     /coded_by="XM_054056730.1:17..1381"
                     /db_xref="GeneID:104057417"
ORIGIN      
        1 mgrcwlrlaa llalaagpsl qdegsgyspl eddedvyahn ryketpwcsp ikvkhgyanc
       61 rtphgqyykn vlgtrcdirc qkgyelhgpp qlicqsskrw sgkvlckqkr cptlsmptng
      121 gfkcldgayf gsrceyycsp gyqlkgdriv tcmdnkiwsg rpascidtep priqcpsvke
      181 ktaepnklta rvfwdtpegr dtadgiltdv ilkglppgsh fpegdhkiqy tvydraenkg
      241 tckflvkvrv rrceklnapd ngyikcsgdg nnygatceff ctggyelqgs parvcqynlg
      301 wsgmeptcap mninvnvrta aalldqfyek rrlliistpt aanffyrmql gmlqpaqcgl
      361 dlrhvtvvel vgvfpaqigr igvkllppsl alqlrlllri phynfnimvm dkhgmdkery
      421 pfpatpaeif alidnfplrk eemklqaesg qscp
//
LOCUS       XP_053912706             434 aa            linear   VRT 09-MAR-2023
DEFINITION  sushi repeat-containing protein SRPX isoform X2 [Cuculus canorus].
ACCESSION   XP_053912706
VERSION     XP_053912706.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056731.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..434
                     /product="sushi repeat-containing protein SRPX isoform X2"
                     /calculated_mol_wt=48451
     Region          30..84
                     /region_name="CCP"
                     /note="Domain abundant in complement control proteins;
                     SUSHI repeat; short complement-like repeat (SCR);
                     smart00032"
                     /db_xref="CDD:214478"
     Site            order(37,61)
                     /site_type="active"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     Region          91..146
                     /region_name="CCP"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     cd00033"
                     /db_xref="CDD:153056"
     Site            order(101,119)
                     /site_type="active"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     Region          147..228
                     /region_name="HYR"
                     /note="HYR domain; pfam02494"
                     /db_xref="CDD:460572"
     Region          233..288
                     /region_name="CCP"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     cd00033"
                     /db_xref="CDD:153056"
     Site            order(243,262)
                     /site_type="active"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     Region          303..422
                     /region_name="DUF4174"
                     /note="Domain of unknown function (DUF4174); pfam13778"
                     /db_xref="CDD:463980"
     CDS             1..434
                     /gene="SRPX"
                     /coded_by="XM_054056731.1:14..1318"
                     /db_xref="GeneID:104057417"
ORIGIN      
        1 mgrcwlrlaa llalaagpsl qdeetpwcsp ikvkhgyanc rtphgqyykn vlgtrcdirc
       61 qkgyelhgpp qlicqsskrw sgkvlckqkr cptlsmptng gfkcldgayf gsrceyycsp
      121 gyqlkgdriv tcmdnkiwsg rpascidtep priqcpsvke ktaepnklta rvfwdtpegr
      181 dtadgiltdv ilkglppgsh fpegdhkiqy tvydraenkg tckflvkvrv rrceklnapd
      241 ngyikcsgdg nnygatceff ctggyelqgs parvcqynlg wsgmeptcap mninvnvrta
      301 aalldqfyek rrlliistpt aanffyrmql gmlqpaqcgl dlrhvtvvel vgvfpaqigr
      361 igvkllppsl alqlrlllri phynfnimvm dkhgmdkery pfpatpaeif alidnfplrk
      421 eemklqaesg qscp
//
LOCUS       XP_053912707            1485 aa            linear   VRT 09-MAR-2023
DEFINITION  cystic fibrosis transmembrane conductance regulator [Cuculus
            canorus].
ACCESSION   XP_053912707
VERSION     XP_053912707.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056732.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1485
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1485
                     /product="cystic fibrosis transmembrane conductance
                     regulator"
                     /calculated_mol_wt=168121
     Region          1..1472
                     /region_name="CFTR_protein"
                     /note="cystic fibrosis transmembrane conductor regulator
                     (CFTR); TIGR01271"
                     /db_xref="CDD:273530"
     CDS             1..1485
                     /gene="CFTR"
                     /coded_by="XM_054056732.1:87..4544"
                     /db_xref="GeneID:104064321"
ORIGIN      
        1 mqrsplekan vfsklffrwt kpilkkgyrr rlelsdiyqi psvdsadnls eklerewdre
       61 latskkkpkl inalrrcffw kfmfygiily lgevtksvqp lllgriiasy dpdnsdersi
      121 ayylgiglcl lffvrtllih pavfglhhig mqmriamfsl iykkilklss rvldkistgq
      181 lvsllsnnln kfdeglalah fvwiaplqva llmgllwdml easafsglal livlafiqaw
      241 lgqmmmkyrn kragkinerl vitseiieni qsvkaycwed amekmiesir etelkltrka
      301 ayvryfnssa fffsgffvvf lavlpyavtk giilrkiftt isfcivlrmt vtrqfpgsvq
      361 twydsigain kiqdfllkke ykaleynltt tgveldkvta fwdegigelf vkanqennns
      421 kvpstdknlf fsnfplhatp vlqdinfkie kgqllavsgs tgagktsllm limgelepsq
      481 gkikhsgris fspqvswimp gtikeniifg vsydeyryks vikacqleed iskfpdkdyt
      541 vlgeggiils ggqrarisla ravykdadly lldspfghld iftekeifes cvcklmankt
      601 rilvtskleh lkiadkilil hegscyfygt fselqgqrpd fsselmgfds fdqfsaerrn
      661 siltealrrf siegegvgsr neikrqsfkq tsdfndkrkn siiinplnag rkfsvvqkng
      721 mqvngiedgh ndpperklsl vldleqgdvg llrnnmlstd hvlqgrrrqs vlnlmtgtsa
      781 qygsnfskkg sttfrkmsvv pqtnlssemd iytrrlsrds vlditdeise edlkecfadd
      841 adsmgtvttw ntyfryvtih knlifvlilc vtvfllevaa slaglwflkk talkanetqs
      901 dnstsdkppv ivtdtstyyi iyiyvgvadt llamgifrgl plvhtlitvs ktlhqkmvha
      961 vlhapmstfn swkaggmlnr fskdtavldd llpltvfdfi qlilivigai tvvsilqpyi
     1021 flasvpviaa fimlrayflh tsqqlkqles earspifthl vtslkglwtl rafgrqpyfe
     1081 tlfhkalnlh tanwflylst lrwfqmriei ifvvffvava fisiittgdg pgrvgiiltl
     1141 amnimgtlqw avnssidvds lmrsvgrifk fidmpteetk nikprkntql sdalvienrh
     1201 akegknwpsg gqmtvkdlta kyseggaavl enisfsissg qrvgllgrtg sgkstllfaf
     1261 lrllntegdi qidgvswntv svqqwrkafg vipqkvfifs gtfrmnldpy gqwsdeeiwk
     1321 vaeevglksv ieqfpgqldf ilvdggcvls hghkqlmcla rsvlskakil lldepsahld
     1381 pvtsqvirkt lkhafanctv ilsehrleam lecqrflvie dnklrqyesi qkllneksff
     1441 rqaishadrl kllpvyhrns skrkprpkit alqeeteeev qetrl
//
LOCUS       XP_053912708             375 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: probable G-protein coupled receptor 85
            [Cuculus canorus].
ACCESSION   XP_053912708
VERSION     XP_053912708.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056733.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..375
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..375
                     /product="LOW QUALITY PROTEIN: probable G-protein coupled
                     receptor 85"
                     /calculated_mol_wt=42247
     Region          21..350
                     /region_name="7tmA_SREB2_GPR85"
                     /note="super conserved receptor expressed in brain 2 (or
                     GPR85), member of the class A family of
                     seven-transmembrane G protein-coupled receptors; cd15218"
                     /db_xref="CDD:320346"
     Region          22..48
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320346"
     Region          55..80
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320346"
     Site            order(77,80..81,94..99,101..102,105,150,152..156,179,
                     182..184,186..188,190..191,298,301..302,304..305,308,
                     317..318,320..322,325,328..329)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320346"
     Region          94..124
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320346"
     Region          136..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320346"
     Region          179..208
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320346"
     Region          278..308
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320346"
     Region          318..343
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320346"
     CDS             1..375
                     /gene="GPR85"
                     /coded_by="XM_054056733.1:456..1583"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /db_xref="GeneID:104064331"
ORIGIN      
        1 manyshaadn ilqnlsplta flkltslgfi igvsvvgnll isillvkdkt lhrapyyfll
       61 dlccsdilrs aicfpfvfts vkngstwtyg tltckviafl gvlscfhtaf mlfcisvtry
      121 laiahhrfyt krltfwtcla vicmvwtlsv amafppvldv gtysfireed qctfqhrsfr
      181 andslgfmll lalillatql vylkliffvh drrkmkpvqf vaavsqnwtf hgpgasgqaa
      241 anwlagfgrg ptpptllgir qnanttgrrr llvldefkme krisrmfyim tflfltlwgp
      301 ylvacywrvf argpvvpggf ltaavwmsfa qaginpfvci fsnrelrrcf xhnpsllqki
      361 qvtkgtllcy mkehl
//
LOCUS       XP_053912709             868 aa            linear   VRT 09-MAR-2023
DEFINITION  protein MCM10 homolog isoform X1 [Cuculus canorus].
ACCESSION   XP_053912709
VERSION     XP_053912709.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056734.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..868
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..868
                     /product="protein MCM10 homolog isoform X1"
                     /calculated_mol_wt=97096
     Region          373..418
                     /region_name="zf-primase"
                     /note="Primase zinc finger; pfam09329"
                     /db_xref="CDD:462758"
     Region          515..866
                     /region_name="Mcm10"
                     /note="Mcm10 replication factor; pfam09332"
                     /db_xref="CDD:462760"
     CDS             1..868
                     /gene="MCM10"
                     /coded_by="XM_054056734.1:96..2702"
                     /db_xref="GeneID:104066242"
ORIGIN      
        1 mdadddldll aslldeseat eernppeeed apedeqgepd eydelfdeed dvsyteevsa
       61 edsmideqke nlatlfgdvh dlleeeeaee avptsapsqa kektneelqa elrklqeqmk
      121 tlqeqlqkta igqksspgpe kktpgkspcq plkerkvqkl qespcfsaql gnplppakrg
      181 iqksnttsae nktplrqvls lafqplktat gntpskvtre ktphvptcss atsqpvsvek
      241 fsglrlrkpr vssaemdrkm anrklirlsq lktklatenl eevdwvtfgv ivkkvtpqst
      301 sngrtfsiwr lndlqdlnqc vslflfgdvh kehwktdqgt vigllnanpm kpkegsdevc
      361 lsvdhpqkil lmgealdmgt ckarkkngdp caqivnlndc eycqyhiqsq ykklsskrad
      421 lqstfsggri pkkvgrknqs lkerlcqdgf yyggvssaay aasvaaaavp krkiqttlsn
      481 lvvsgvdaiv qetrqkigat krpmqcseef rellaqptfg arnlckhwtk adaekkqgan
      541 fqsvsasall kqqkqkllea rkkrseeiqr rflqntskag spgvpsssrq sslhspvpga
      601 efpkaakmsn pqrprlgtgf segedilffd gsppptpkld slaeakklaa ihrlrakgqi
      661 laktdpnsvk rkradvdkvl eiverveknv aqphgreaed gvdelepalk krreqlayle
      721 seefqkilna kskhtdvlke veadlqeqyf qplvkkeele ekmrsikavk crvvtcktcn
      781 ytyfkpletc vqdnhdyhwh daikrffkcp cgcraisldr lpkkhcstcg lfkwerdgml
      841 kekkgpkigg etllprgeeq pkflnslk
//
LOCUS       XP_053912710             862 aa            linear   VRT 09-MAR-2023
DEFINITION  protein MCM10 homolog isoform X2 [Cuculus canorus].
ACCESSION   XP_053912710
VERSION     XP_053912710.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056735.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..862
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..862
                     /product="protein MCM10 homolog isoform X2"
                     /calculated_mol_wt=96438
     Region          373..418
                     /region_name="zf-primase"
                     /note="Primase zinc finger; pfam09329"
                     /db_xref="CDD:462758"
     Region          515..860
                     /region_name="Mcm10"
                     /note="Mcm10 replication factor; pfam09332"
                     /db_xref="CDD:462760"
     CDS             1..862
                     /gene="MCM10"
                     /coded_by="XM_054056735.1:96..2684"
                     /db_xref="GeneID:104066242"
ORIGIN      
        1 mdadddldll aslldeseat eernppeeed apedeqgepd eydelfdeed dvsyteevsa
       61 edsmideqke nlatlfgdvh dlleeeeaee avptsapsqa kektneelqa elrklqeqmk
      121 tlqeqlqkta igqksspgpe kktpgkspcq plkerkvqkl qespcfsaql gnplppakrg
      181 iqksnttsae nktplrqvls lafqplktat gntpskvtre ktphvptcss atsqpvsvek
      241 fsglrlrkpr vssaemdrkm anrklirlsq lktklatenl eevdwvtfgv ivkkvtpqst
      301 sngrtfsiwr lndlqdlnqc vslflfgdvh kehwktdqgt vigllnanpm kpkegsdevc
      361 lsvdhpqkil lmgealdmgt ckarkkngdp caqivnlndc eycqyhiqsq ykklsskrad
      421 lqstfsggri pkkvgrknqs lkerlcqdgf yyggvssaay aasvaaaavp krkiqttlsn
      481 lvvsgvdaiv qetrqkigat krpmqcseef rellaqptfg arnlckhwtk adaekkqgan
      541 fqsvsasall kqqkqkllea rkkrseeiqr rflqntskag spgvpsssrq sslhspvpga
      601 efpkaakmsn pqrprlgtgf segedilffd gsppptpkld slaeakklaa ihrlrakgqi
      661 laktdpnsvk rkradvdkvl eiverveknv aqphgvdele palkkrreql ayleseefqk
      721 ilnakskhtd vlkeveadlq eqyfqplvkk eeleekmrsi kavkcrvvtc ktcnytyfkp
      781 letcvqdnhd yhwhdaikrf fkcpcgcrai sldrlpkkhc stcglfkwer dgmlkekkgp
      841 kiggetllpr geeqpkflns lk
//
LOCUS       XP_009554265             214 aa            linear   VRT 09-MAR-2023
DEFINITION  claudin-34 [Cuculus canorus].
ACCESSION   XP_009554265
VERSION     XP_009554265.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009555970.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..214
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..214
                     /product="claudin-34"
                     /calculated_mol_wt=23356
     Region          20..201
                     /region_name="PMP22_Claudin"
                     /note="PMP-22/EMP/MP20/Claudin family; cl21598"
                     /db_xref="CDD:473919"
     CDS             1..214
                     /gene="CLDN34"
                     /coded_by="XM_009555970.2:1..645"
                     /db_xref="GeneID:104054903"
ORIGIN      
        1 msslvstsrl qlaafalgtv gwilctismg lvewrvwhvn nttiissgia wvgiwkvcfi
       61 sylhvspgyk eqfchkfsgy essipheiya aqgllliamf mgllgltatv falrnvymgi
      121 ihktlitrff lvagffyila glcvlipvsw nfysvthnqs iafppsyymp sspaaqeaga
      181 aipigivavi llllsgtfsl syrfpvtani itns
//
LOCUS       XP_053912712             376 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SOX-1 [Cuculus canorus].
ACCESSION   XP_053912712
VERSION     XP_053912712.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056737.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..376
                     /product="transcription factor SOX-1"
                     /calculated_mol_wt=38311
     Region          49..128
                     /region_name="HMG-box_SoxB"
                     /note="high mobility group (HMG)-box found in group B
                     SRY-related high-mobility group (HMG) box (Sox)
                     transcription factors; cd01388"
                     /db_xref="CDD:438790"
     Site            order(50,52..53,55..59,63,66..67,74..79,82..83,86,89..90,
                     97,108,120..125)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438790"
     Region          120..>216
                     /region_name="SOXp"
                     /note="SOX transcription factor; pfam12336"
                     /db_xref="CDD:463537"
     CDS             1..376
                     /gene="SOX1"
                     /coded_by="XM_054056737.1:105..1235"
                     /db_xref="GeneID:128850974"
ORIGIN      
        1 mysmmmetdl hspggaqapt nlsgqtgagg gggggggggg gggnkanqdr vkrpmnafmv
       61 wsrgqrrkma qenpkmhnse iskrlgaewk vmseaekrpf ideakrlral hmkehpdyky
      121 rprrktktll kkdkyslagg llsagsaggg pagvgvgmgv gvspggvgqr lespggtagg
      181 gyahmngwan gaypgsvaaa aaaaammqea qlaysqhpgs gghphhphph hphhphnpqp
      241 mhrydmgalq yspisnsqgy msaspsgyga lpygsqphqn saaaaaaaaa aaaassgalg
      301 algslvksep svsppvtshs rapcpgdlre mismylpage ggdpaaaaaq srlhslpqhy
      361 qsastgvngt vplthi
//
LOCUS       XP_053912713             195 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-17D [Cuculus canorus].
ACCESSION   XP_053912713
VERSION     XP_053912713.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056738.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..195
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..195
                     /product="interleukin-17D"
                     /calculated_mol_wt=21593
     Region          83..164
                     /region_name="IL17"
                     /note="Interleukin-17; pfam06083"
                     /db_xref="CDD:461823"
     CDS             1..195
                     /gene="IL17D"
                     /coded_by="XM_054056738.1:113..700"
                     /db_xref="GeneID:104055320"
ORIGIN      
        1 mqrgrvraal aallcaallp lpreaarask rprscgerpe elleqlygrl aagmlsafhh
       61 tlqpernrsc pagtrgrgpv nlrsaspway risydptryp kyipeayclc kgcltgifge
      121 enfhfrstpv ymptvilrrt sscaggryvy tedyvtipvg ctcvpeheke aesvnssidk
      181 qevkllvsqn kpsse
//
LOCUS       XP_053912714             767 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptotagmin-like protein 5 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912714
VERSION     XP_053912714.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056739.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..767
                     /product="synaptotagmin-like protein 5 isoform X1"
                     /calculated_mol_wt=85550
     Region          11..125
                     /region_name="PHD_SF"
                     /note="PHD finger superfamily; cl22851"
                     /db_xref="CDD:473978"
     Region          64..110
                     /region_name="FYVE_like_SF"
                     /note="FYVE domain like superfamily; cl28890"
                     /db_xref="CDD:333710"
     Site            order(79..84,89,103)
                     /site_type="other"
                     /note="phosphatidylinositol 3-phosphate binding site
                     [chemical binding]"
                     /db_xref="CDD:277249"
     Region          444..567
                     /region_name="C2A_SLP-4_5"
                     /note="C2 domain first repeat present in
                     Synaptotagmin-like proteins 4 and 5; cd04029"
                     /db_xref="CDD:175995"
     Region          581..759
                     /region_name="C2B_SLP_1-2-3-4"
                     /note="C2 domain second repeat present in
                     Synaptotagmin-like proteins 1-4; cd04020"
                     /db_xref="CDD:175987"
     CDS             1..767
                     /gene="SYTL5"
                     /coded_by="XM_054056739.1:604..2907"
                     /db_xref="GeneID:104057263"
ORIGIN      
        1 mtkhleiinl sflleheket ilgvlkrdey lkkvedkrir klknellevr rkggnrhsqq
       61 dnsrvcircq kslgfifdrg dlcqtcklrv cskcrvmgtd gqwkcsvcak iaqlrivtge
      121 wffeerakrf kqsnllgtdv vrqsilrkfp dtvsskdegs tfkdepqend errlevsvss
      181 taghksvfsg prkigkvira itkgeirntk ddgeknmdse aetqsphssk stpcsergst
      241 lslnssdgea tasylkgavg pasrgnasih slprslalst gnmtadysrd tglengmiip
      301 asesvpedlv kkhcrkasgt psiavsrisl ssdrsrseid lsesfseene dtlsmrsksv
      361 psaldqeldy ldetedging imascysrkh ghltsglstn spdgsdrkwt ylnvpetdgd
      421 ttsinsmlsv ysetgdygdv kvrgeillni nysyktgaln ilvkccrnla vadekkqrtd
      481 pyvkayllpd ksrqskrktk iksnstnpef netlkyvish tqletrtlql svwhydrfgh
      541 nsflgeveip ldswnfenqg dewfvlqpkv evatdvglqy kgeltvvlry ippdrnlmlp
      601 lgqfqgkksf kkgkkgdshm psggilevli keaknltavk sgstsdtfvk gyllpddska
      661 tkhktptikk svnpqwnhtf afsglnsrdi rnvcleltvw dkeslssnif lggvrlntgn
      721 gvsngkevdw mdsqgeeqnl wqkmidspgt pvegilmlrs smgkrrl
//
LOCUS       XP_053912715             736 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptotagmin-like protein 5 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912715
VERSION     XP_053912715.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056740.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..736
                     /product="synaptotagmin-like protein 5 isoform X2"
                     /calculated_mol_wt=82196
     Region          11..125
                     /region_name="PHD_SF"
                     /note="PHD finger superfamily; cl22851"
                     /db_xref="CDD:473978"
     Region          64..110
                     /region_name="FYVE_like_SF"
                     /note="FYVE domain like superfamily; cl28890"
                     /db_xref="CDD:333710"
     Site            order(79..84,89,103)
                     /site_type="other"
                     /note="phosphatidylinositol 3-phosphate binding site
                     [chemical binding]"
                     /db_xref="CDD:277249"
     Region          413..536
                     /region_name="C2A_SLP-4_5"
                     /note="C2 domain first repeat present in
                     Synaptotagmin-like proteins 4 and 5; cd04029"
                     /db_xref="CDD:175995"
     Region          550..728
                     /region_name="C2B_SLP_1-2-3-4"
                     /note="C2 domain second repeat present in
                     Synaptotagmin-like proteins 1-4; cd04020"
                     /db_xref="CDD:175987"
     CDS             1..736
                     /gene="SYTL5"
                     /coded_by="XM_054056740.1:604..2814"
                     /db_xref="GeneID:104057263"
ORIGIN      
        1 mtkhleiinl sflleheket ilgvlkrdey lkkvedkrir klknellevr rkggnrhsqq
       61 dnsrvcircq kslgfifdrg dlcqtcklrv cskcrvmgtd gqwkcsvcak iaqlrivtge
      121 wffeerakrf kqsnllgtdv vrqsilrkfp dtvsskdegs tfkdepqend errlevsvss
      181 taghksvfsg prkigkvira itkgeirntk ddgeknmdse aetqsphssk stpcsergst
      241 lslnssdgea tasylkgavg pasrgnasih slprslalst gnmtadysrd tglengmiip
      301 asesvpedlv kkhcrkasgt psiavsrisl ssdrsrseid lsesfseene dtlsmrsksv
      361 psaldqelns pdgsdrkwty lnvpetdgdt tsinsmlsvy setgdygdvk vrgeillnin
      421 ysyktgalni lvkccrnlav adekkqrtdp yvkayllpdk srqskrktki ksnstnpefn
      481 etlkyvisht qletrtlqls vwhydrfghn sflgeveipl dswnfenqgd ewfvlqpkve
      541 vatdvglqyk geltvvlryi ppdrnlmlpl gqfqgkksfk kgkkgdshmp sggilevlik
      601 eaknltavks gstsdtfvkg yllpddskat khktptikks vnpqwnhtfa fsglnsrdir
      661 nvcleltvwd keslssnifl ggvrlntgng vsngkevdwm dsqgeeqnlw qkmidspgtp
      721 vegilmlrss mgkrrl
//
LOCUS       XP_053912716             714 aa            linear   VRT 09-MAR-2023
DEFINITION  synaptotagmin-like protein 5 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912716
VERSION     XP_053912716.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056741.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..714
                     /product="synaptotagmin-like protein 5 isoform X3"
                     /calculated_mol_wt=79747
     Region          11..125
                     /region_name="PHD_SF"
                     /note="PHD finger superfamily; cl22851"
                     /db_xref="CDD:473978"
     Region          64..110
                     /region_name="FYVE_like_SF"
                     /note="FYVE domain like superfamily; cl28890"
                     /db_xref="CDD:333710"
     Site            order(79..84,89,103)
                     /site_type="other"
                     /note="phosphatidylinositol 3-phosphate binding site
                     [chemical binding]"
                     /db_xref="CDD:277249"
     Region          391..514
                     /region_name="C2A_SLP-4_5"
                     /note="C2 domain first repeat present in
                     Synaptotagmin-like proteins 4 and 5; cd04029"
                     /db_xref="CDD:175995"
     Region          528..706
                     /region_name="C2B_SLP_1-2-3-4"
                     /note="C2 domain second repeat present in
                     Synaptotagmin-like proteins 1-4; cd04020"
                     /db_xref="CDD:175987"
     CDS             1..714
                     /gene="SYTL5"
                     /coded_by="XM_054056741.1:604..2748"
                     /db_xref="GeneID:104057263"
ORIGIN      
        1 mtkhleiinl sflleheket ilgvlkrdey lkkvedkrir klknellevr rkggnrhsqq
       61 dnsrvcircq kslgfifdrg dlcqtcklrv cskcrvmgtd gqwkcsvcak iaqlrivtge
      121 wffeerakrf kqsnllgtdv vrqsilrkfp dtvsskdegs tfkdepqend errlevsvss
      181 taghksvfsg prkigkvira itkgeirntk ddgeknmdse aetqsphssk stpcsergst
      241 lslnssdgea tasylkgavg pasrgnasih slprslalst gnmtadysrd tglengmiip
      301 asesvpedlv kkhcrkasgt psiavsrisl ssdrsrseid lsesfseene dtlsmrsksv
      361 psaldqelts insmlsvyse tgdygdvkvr geillninys yktgalnilv kccrnlavad
      421 ekkqrtdpyv kayllpdksr qskrktkiks nstnpefnet lkyvishtql etrtlqlsvw
      481 hydrfghnsf lgeveiplds wnfenqgdew fvlqpkveva tdvglqykge ltvvlryipp
      541 drnlmlplgq fqgkksfkkg kkgdshmpsg gilevlikea knltavksgs tsdtfvkgyl
      601 lpddskatkh ktptikksvn pqwnhtfafs glnsrdirnv cleltvwdke slssniflgg
      661 vrlntgngvs ngkevdwmds qgeeqnlwqk midspgtpve gilmlrssmg krrl
//
LOCUS       XP_009564951            1179 aa            linear   VRT 09-MAR-2023
DEFINITION  protein phosphatase 1 regulatory subunit 3A [Cuculus canorus].
ACCESSION   XP_009564951
VERSION     XP_009564951.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566656.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564951.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1179
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1179
                     /product="protein phosphatase 1 regulatory subunit 3A"
                     /calculated_mol_wt=131180
     Region          10..88
                     /region_name="PBD_PPP1R3A"
                     /note="PP1C binding domain found in protein phosphatase 1
                     regulatory subunit 3A (PPP1R3A) and similar proteins;
                     cd22255"
                     /db_xref="CDD:439277"
     Site            order(64..70,72,74,76..82)
                     /site_type="other"
                     /note="PP1C binding site [polypeptide binding]"
                     /db_xref="CDD:439277"
     Region          124..231
                     /region_name="CBM_21"
                     /note="Carbohydrate/starch-binding module (family 21);
                     pfam03370"
                     /db_xref="CDD:427265"
     CDS             1..1179
                     /gene="PPP1R3A"
                     /coded_by="XM_009566656.2:25..3564"
                     /db_xref="GeneID:104064330"
ORIGIN      
        1 mesfegpsrf sranllevpt vndfsseded vksdikprfs plprrrnsas seeeeadtps
       61 tiarkvsfad afgfdlvsvk efntwevpnt gqnddivdev fpqeeyyfsq lfmlpasqee
      121 llhkvreqkv llesvvflpg itcmngiirv lnvsfekmvy vrmtlnnwls yydilaefmp
      181 nscgsetdqf cfkislvppy qkdgakvefc iryetsvgtf wannddrnyt lichkketvp
      241 nldnkphkev sdrhlkgclk ttqsskeeil atsdddtwnn srtsdtnipe ivysqaedkd
      301 tksaneylkd knaeynqgdh eddekelell lnqhftgarg tssrdernly tsepvnfpsd
      361 terlekklty tersddllrh pvpissssen taqeirgklk dkvkysprdy nsqppgkevt
      421 agsvnsgews lernstsesl lsakyfpgtk qneaidtkas gsgqqrecha diskgetdsa
      481 sgskmmerlf isedaadtsk gvcemrpemi spehdesmql naciaetldg nanpaqkqqa
      541 lqtshqtlds llsgadknea kikmieskvq vhlrgdlyad tfahagvsid saksqytqkk
      601 gvgempeknh ntgagketkv ievadlalig eeeapkpfks hrkcaakaln ttllsaednk
      661 qapkpaqadr tasslgderi aedvgehrgf mrlkdrgksd dtnkgrlign ereanaaeqr
      721 wqdlgsevrw gergntvpqs mastkelftc qeaescekss vseqsvteea eagtayiikt
      781 tsesapekms asekaviakl pqetalsdrp teeketafdt hegrndgshy alcqlntvgv
      841 lydtefekes vlgiynarvh etlqgetmsv cnsrekraka qqdigdilpv geavkasatg
      901 kkedlqqgly sevfkcppst qkhlyseeve alyregshvg trpylharae temppsgtnt
      961 vpsfhyksss vassegstva gdmehlyshl efriidkvaa esghnlslqs emtcinksls
     1021 pgagkkelts tsdivisqee rgrstgqcfh qaevkqeksl mpevlisklp eeaggtgsls
     1081 dhsitegnml nwlddspees qhisdsaess nqkskalklp nespglnhia ckifyffffl
     1141 lfaatlyhyd lmvclalylf slywlygegr inketvkke
//
LOCUS       XP_053912717            1179 aa            linear   VRT 09-MAR-2023
DEFINITION  protein phosphatase 1 regulatory subunit 3A [Cuculus canorus].
ACCESSION   XP_053912717
VERSION     XP_053912717.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056742.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1179
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1179
                     /product="protein phosphatase 1 regulatory subunit 3A"
                     /calculated_mol_wt=131180
     Region          10..88
                     /region_name="PBD_PPP1R3A"
                     /note="PP1C binding domain found in protein phosphatase 1
                     regulatory subunit 3A (PPP1R3A) and similar proteins;
                     cd22255"
                     /db_xref="CDD:439277"
     Site            order(64..70,72,74,76..82)
                     /site_type="other"
                     /note="PP1C binding site [polypeptide binding]"
                     /db_xref="CDD:439277"
     Region          124..231
                     /region_name="CBM_21"
                     /note="Carbohydrate/starch-binding module (family 21);
                     pfam03370"
                     /db_xref="CDD:427265"
     CDS             1..1179
                     /gene="PPP1R3A"
                     /coded_by="XM_054056742.1:25..3564"
                     /db_xref="GeneID:104064330"
ORIGIN      
        1 mesfegpsrf sranllevpt vndfsseded vksdikprfs plprrrnsas seeeeadtps
       61 tiarkvsfad afgfdlvsvk efntwevpnt gqnddivdev fpqeeyyfsq lfmlpasqee
      121 llhkvreqkv llesvvflpg itcmngiirv lnvsfekmvy vrmtlnnwls yydilaefmp
      181 nscgsetdqf cfkislvppy qkdgakvefc iryetsvgtf wannddrnyt lichkketvp
      241 nldnkphkev sdrhlkgclk ttqsskeeil atsdddtwnn srtsdtnipe ivysqaedkd
      301 tksaneylkd knaeynqgdh eddekelell lnqhftgarg tssrdernly tsepvnfpsd
      361 terlekklty tersddllrh pvpissssen taqeirgklk dkvkysprdy nsqppgkevt
      421 agsvnsgews lernstsesl lsakyfpgtk qneaidtkas gsgqqrecha diskgetdsa
      481 sgskmmerlf isedaadtsk gvcemrpemi spehdesmql naciaetldg nanpaqkqqa
      541 lqtshqtlds llsgadknea kikmieskvq vhlrgdlyad tfahagvsid saksqytqkk
      601 gvgempeknh ntgagketkv ievadlalig eeeapkpfks hrkcaakaln ttllsaednk
      661 qapkpaqadr tasslgderi aedvgehrgf mrlkdrgksd dtnkgrlign ereanaaeqr
      721 wqdlgsevrw gergntvpqs mastkelftc qeaescekss vseqsvteea eagtayiikt
      781 tsesapekms asekaviakl pqetalsdrp teeketafdt hegrndgshy alcqlntvgv
      841 lydtefekes vlgiynarvh etlqgetmsv cnsrekraka qqdigdilpv geavkasatg
      901 kkedlqqgly sevfkcppst qkhlyseeve alyregshvg trpylharae temppsgtnt
      961 vpsfhyksss vassegstva gdmehlyshl efriidkvaa esghnlslqs emtcinksls
     1021 pgagkkelts tsdivisqee rgrstgqcfh qaevkqeksl mpevlisklp eeaggtgsls
     1081 dhsitegnml nwlddspees qhisdsaess nqkskalklp nespglnhia ckifyffffl
     1141 lfaatlyhyd lmvclalylf slywlygegr inketvkke
//
LOCUS       XP_053912719            1179 aa            linear   VRT 09-MAR-2023
DEFINITION  protein phosphatase 1 regulatory subunit 3A [Cuculus canorus].
ACCESSION   XP_053912719
VERSION     XP_053912719.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056744.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1179
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1179
                     /product="protein phosphatase 1 regulatory subunit 3A"
                     /calculated_mol_wt=131180
     Region          10..88
                     /region_name="PBD_PPP1R3A"
                     /note="PP1C binding domain found in protein phosphatase 1
                     regulatory subunit 3A (PPP1R3A) and similar proteins;
                     cd22255"
                     /db_xref="CDD:439277"
     Site            order(64..70,72,74,76..82)
                     /site_type="other"
                     /note="PP1C binding site [polypeptide binding]"
                     /db_xref="CDD:439277"
     Region          124..231
                     /region_name="CBM_21"
                     /note="Carbohydrate/starch-binding module (family 21);
                     pfam03370"
                     /db_xref="CDD:427265"
     CDS             1..1179
                     /gene="PPP1R3A"
                     /coded_by="XM_054056744.1:25..3564"
                     /db_xref="GeneID:104064330"
ORIGIN      
        1 mesfegpsrf sranllevpt vndfsseded vksdikprfs plprrrnsas seeeeadtps
       61 tiarkvsfad afgfdlvsvk efntwevpnt gqnddivdev fpqeeyyfsq lfmlpasqee
      121 llhkvreqkv llesvvflpg itcmngiirv lnvsfekmvy vrmtlnnwls yydilaefmp
      181 nscgsetdqf cfkislvppy qkdgakvefc iryetsvgtf wannddrnyt lichkketvp
      241 nldnkphkev sdrhlkgclk ttqsskeeil atsdddtwnn srtsdtnipe ivysqaedkd
      301 tksaneylkd knaeynqgdh eddekelell lnqhftgarg tssrdernly tsepvnfpsd
      361 terlekklty tersddllrh pvpissssen taqeirgklk dkvkysprdy nsqppgkevt
      421 agsvnsgews lernstsesl lsakyfpgtk qneaidtkas gsgqqrecha diskgetdsa
      481 sgskmmerlf isedaadtsk gvcemrpemi spehdesmql naciaetldg nanpaqkqqa
      541 lqtshqtlds llsgadknea kikmieskvq vhlrgdlyad tfahagvsid saksqytqkk
      601 gvgempeknh ntgagketkv ievadlalig eeeapkpfks hrkcaakaln ttllsaednk
      661 qapkpaqadr tasslgderi aedvgehrgf mrlkdrgksd dtnkgrlign ereanaaeqr
      721 wqdlgsevrw gergntvpqs mastkelftc qeaescekss vseqsvteea eagtayiikt
      781 tsesapekms asekaviakl pqetalsdrp teeketafdt hegrndgshy alcqlntvgv
      841 lydtefekes vlgiynarvh etlqgetmsv cnsrekraka qqdigdilpv geavkasatg
      901 kkedlqqgly sevfkcppst qkhlyseeve alyregshvg trpylharae temppsgtnt
      961 vpsfhyksss vassegstva gdmehlyshl efriidkvaa esghnlslqs emtcinksls
     1021 pgagkkelts tsdivisqee rgrstgqcfh qaevkqeksl mpevlisklp eeaggtgsls
     1081 dhsitegnml nwlddspees qhisdsaess nqkskalklp nespglnhia ckifyffffl
     1141 lfaatlyhyd lmvclalylf slywlygegr inketvkke
//
LOCUS       XP_053912720              85 aa            linear   VRT 09-MAR-2023
DEFINITION  retinal cone rhodopsin-sensitive cGMP 3',5'-cyclic
            phosphodiesterase subunit gamma [Cuculus canorus].
ACCESSION   XP_053912720
VERSION     XP_053912720.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056745.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..85
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..85
                     /product="retinal cone rhodopsin-sensitive cGMP
                     3',5'-cyclic phosphodiesterase subunit gamma"
                     /calculated_mol_wt=9072
     Region          5..85
                     /region_name="PDE6_gamma"
                     /note="Retinal cGMP phosphodiesterase, gamma subunit;
                     pfam04868"
                     /db_xref="CDD:428163"
     CDS             1..85
                     /gene="PDE6H"
                     /coded_by="XM_054056745.1:359..616"
                     /db_xref="GeneID:104068650"
ORIGIN      
        1 msenppanls tgegatgptt prkgppkfkq rqtrqfkskp pkkgvkgfgd dipgmeglgt
       61 ditvicpwea fshlelhela qfgii
//
LOCUS       XP_009569849              85 aa            linear   VRT 09-MAR-2023
DEFINITION  retinal cone rhodopsin-sensitive cGMP 3',5'-cyclic
            phosphodiesterase subunit gamma [Cuculus canorus].
ACCESSION   XP_009569849
VERSION     XP_009569849.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009571554.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..85
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..85
                     /product="retinal cone rhodopsin-sensitive cGMP
                     3',5'-cyclic phosphodiesterase subunit gamma"
                     /calculated_mol_wt=9072
     Region          5..85
                     /region_name="PDE6_gamma"
                     /note="Retinal cGMP phosphodiesterase, gamma subunit;
                     pfam04868"
                     /db_xref="CDD:428163"
     CDS             1..85
                     /gene="PDE6H"
                     /coded_by="XM_009571554.2:200..457"
                     /db_xref="GeneID:104068650"
ORIGIN      
        1 msenppanls tgegatgptt prkgppkfkq rqtrqfkskp pkkgvkgfgd dipgmeglgt
       61 ditvicpwea fshlelhela qfgii
//
LOCUS       XP_053912721            1270 aa            linear   VRT 09-MAR-2023
DEFINITION  centromere protein J [Cuculus canorus].
ACCESSION   XP_053912721
VERSION     XP_053912721.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056746.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1270
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1270
                     /product="centromere protein J"
                     /calculated_mol_wt=143802
     Region          <793..974
                     /region_name="COG2433"
                     /note="Possible nuclease of RNase H fold, RuvC/YqgF family
                     [General function prediction only]"
                     /db_xref="CDD:441980"
     Region          1083..1111
                     /region_name="Tcp10_C"
                     /note="T-complex protein 10 C-terminus; pfam07202"
                     /db_xref="CDD:462118"
     Region          1157..1185
                     /region_name="Tcp10_C"
                     /note="T-complex protein 10 C-terminus; pfam07202"
                     /db_xref="CDD:462118"
     Region          1193..1221
                     /region_name="Tcp10_C"
                     /note="T-complex protein 10 C-terminus; pfam07202"
                     /db_xref="CDD:462118"
     Region          1228..1257
                     /region_name="Tcp10_C"
                     /note="T-complex protein 10 C-terminus; pfam07202"
                     /db_xref="CDD:462118"
     CDS             1..1270
                     /gene="CENPJ"
                     /coded_by="XM_054056746.1:220..4032"
                     /db_xref="GeneID:104055329"
ORIGIN      
        1 mlmlhqqinw nkvykmpave drsgeqnfva hwmsdtsrag vlldptftgl kinkenllsg
       61 renitlfppe avhcsdscsl sddslceesg sscafqrypt eisfpaaarn vetsepdfvh
      121 gevdgqnksd hsdpllqkle qlkelqqqkq eqlkkqqmer lqrlmeeqqk llsivsgqta
      181 vlgrnmwcpe qkmetlmdge ehdidplcve sadlsenssg gkhlwtptde rpikatmqek
      241 kqtfeeflee qikleeqrle qtqklqepng saiqkpvikr pflkrgegls rcanakskit
      301 klrentpnlq qrpsddsnvi kvdrsqiqkk tmcpgkelvs ensfaqckny nhpakakrli
      361 qktlvlrnhn gknispletr lqprknpngq mrdsfpsein nkienkenvi ecaksnagkt
      421 vnklpaaekp rlshelasaf pnskspighp vedpeasfev sfqnklenwe kekdkenlel
      481 deflfleqaa deisfssnss fvqrildldr qtlkgrrmss tpikakeqqi kalaveftnk
      541 rnkkadctvq gnindravmh tvsnsgagfr mkdplnkmds vifsassatt apalksnqwi
      601 vnedkgedsg etttdsesef ettlkhened aktsfmncge snhefldygv svtdinkesr
      661 ngdadlglld kdcsapskqk vgkasdhqrs vscisrskfe fddertwsdl denyinsdlp
      721 ekyteiplqm dfsskndttv pdraikrkvv skrggetske savdsesner pvsnlmmklf
      781 pslkpkqkag chlereikan ieqepeggrt atgntvpsqv lreklmelet eierfraent
      841 tltklreere ralanirkei adfqqqkaqe laeieeykkk emkklqkerr vfekyttear
      901 aipdkkerde iqalkqhive lqedlkrkea kwstthrrlk dqievlvnen melkeeikim
      961 erfrleawkk aeaagskrki ensgmtlrra ecclptkgpk gqtasllppv qkcskinges
     1021 ysqakgklsr tpasapasdr snsetmpvle dssrtsvvdt spneapvslp sgsadlesee
     1081 veretaypdg kvekvlkngc hltffpngtw kkvgsdgktv titffngdvk qimpdqtviy
     1141 yyadakttht tyadglevlq fsngqiekhy pdgkkeiifp dqtiknlftd gqeesilpdg
     1201 tilrvqrdgs ktiefnngqr elhtsefkrr eypdgtvktv yvngqqetky vsgrvrvkdk
     1261 dgnvimdtkl
//
LOCUS       XP_053912722             282 aa            linear   VRT 09-MAR-2023
DEFINITION  peroxisome assembly protein 26 [Cuculus canorus].
ACCESSION   XP_053912722
VERSION     XP_053912722.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056747.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..282
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..282
                     /product="peroxisome assembly protein 26"
                     /calculated_mol_wt=31681
     Region          5..279
                     /region_name="Pex26"
                     /note="Pex26 protein; pfam07163"
                     /db_xref="CDD:462109"
     CDS             1..282
                     /gene="PEX26"
                     /coded_by="XM_054056747.1:68..916"
                     /db_xref="GeneID:104055917"
ORIGIN      
        1 mkgespswpp aaslleeaad llvlhrdfag avrrceagce rlgcgaessa evkcslcvvg
       61 iqalaemnrw revlswvlqy yqipehlppk vlelcillys kvgepqvmle vgsswlrdqt
      121 nkslpeyssl lelyllhvll plgrfegaee lvqgcdalds eqqqaflrti cesrcqwtqq
      181 kemhsggeeq qdaaaetvlg slsqklltml tllrralrsm sshfyvlpyk kmllatflly
      241 lvvvrldpas ptslpfiykl vqlfrqawta vfspmhrppi qn
//
LOCUS       XP_053912723            1029 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA-binding protein 26 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912723
VERSION     XP_053912723.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056748.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1029
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1029
                     /product="RNA-binding protein 26 isoform X1"
                     /calculated_mol_wt=115536
     Region          11..76
                     /region_name="PWI"
                     /note="PWI domain; pfam01480"
                     /db_xref="CDD:460224"
     Region          <301..321
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     Region          547..622
                     /region_name="RRM1_RBM26"
                     /note="RNA recognition motif 1 (RRM1) found in vertebrate
                     RNA-binding protein 26 (RBM26); cd12516"
                     /db_xref="CDD:409938"
     Region          <718..>869
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          908..979
                     /region_name="RRM2_RBM26_like"
                     /note="RNA recognition motif 2 (RRM2) found in vertebrate
                     RNA-binding protein 26 (RBM26) and similar proteins;
                     cd12258"
                     /db_xref="CDD:409703"
     CDS             1..1029
                     /gene="RBM26"
                     /coded_by="XM_054056748.1:339..3428"
                     /db_xref="GeneID:104068392"
ORIGIN      
        1 mvvkmiienf ealkswlskt lepicdadps alakyvlalv kkdksekelk alcvdqldvf
       61 lqketqifve klfdavntks ylpppeqpss gslkveffqh qeketkkeei vkeeerekkf
      121 srrlnhsppq sssryrdtrs rderkkders rkrdydrnpp rrdsyrdryn rrrgrsrsys
      181 rsrsrswske rlrdrdrdrs rsrsrtrsrg snswslryer dlgkpkydld rtdplennyt
      241 pvssvtniss ghypvptlss titviapahh gnntteswse fheeqldhns ygrpplpkkr
      301 crdydekgfc mrgdmcpfdh gsdpvvvedv nlpgilpfpa qppvvegppp pglpppppil
      361 spppvnlrpp vpppgplpps lppvtgpppp lpplqpagmd appnsatssv ptvvttgihh
      421 qpppappslf tagvvlrlcp qetydtdgyn peapsitnts rpmyrhrvha qrpnliglts
      481 gdmdlpprek ppnkssmriv vdaesrkrti gagdggvptk ktwfdkqnfn rtnspgfqkk
      541 vqfgnentkl elrkippeln nisklnehfs kfgnlvnlqv ayqgdpegal iqfatheeak
      601 kaissteavl nnrfikvywh regtapqiqa taqkviqplv qqpslpvvkq svkerlgpvp
      661 asniepaeaq santevtqnv tklsvkdrlg fvskpvtptt ekvlststgl tktvynpaal
      721 kaaqkslpvv stsvldsnea qkkkqealrl qqdvrkkkqe ilekhietqk mliskleknk
      781 amksedkaei mktleiltns itklkdelkg vspgagatsl ksmktktqmq kelldteldl
      841 ykkmqageev telrrkytel qleaakrgil ssvrgrgvha rgrgasrsrg rgirgrgrgr
      901 gvpvhavvdh rpraleisaf tesdredllp hfaqygeied cqiddsslha vitfktraea
      961 eaaaihgsrf kgqelklawn kpvattsave peeaepeeee fqeeslvdds llqdddeeee
     1021 dnesrswrr
//
LOCUS       XP_053912724            1020 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA-binding protein 26 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912724
VERSION     XP_053912724.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056749.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1020
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1020
                     /product="RNA-binding protein 26 isoform X2"
                     /calculated_mol_wt=114570
     Region          11..76
                     /region_name="PWI"
                     /note="PWI domain; pfam01480"
                     /db_xref="CDD:460224"
     Region          <301..321
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     Region          538..613
                     /region_name="RRM1_RBM26"
                     /note="RNA recognition motif 1 (RRM1) found in vertebrate
                     RNA-binding protein 26 (RBM26); cd12516"
                     /db_xref="CDD:409938"
     Region          <709..>860
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          899..970
                     /region_name="RRM2_RBM26_like"
                     /note="RNA recognition motif 2 (RRM2) found in vertebrate
                     RNA-binding protein 26 (RBM26) and similar proteins;
                     cd12258"
                     /db_xref="CDD:409703"
     CDS             1..1020
                     /gene="RBM26"
                     /coded_by="XM_054056749.1:339..3401"
                     /db_xref="GeneID:104068392"
ORIGIN      
        1 mvvkmiienf ealkswlskt lepicdadps alakyvlalv kkdksekelk alcvdqldvf
       61 lqketqifve klfdavntks ylpppeqpss gslkveffqh qeketkkeei vkeeerekkf
      121 srrlnhsppq sssryrdtrs rderkkders rkrdydrnpp rrdsyrdryn rrrgrsrsys
      181 rsrsrswske rlrdrdrdrs rsrsrtrsrg snswslryer dlgkpkydld rtdplennyt
      241 pvssvtniss ghypvptlss titviapahh gnntteswse fheeqldhns ygrpplpkkr
      301 crdydekgfc mrgdmcpfdh gsdpvvvedv nlpgilpfpa qppvvegppp pglpppppil
      361 spppvnlrpp vpppgplpps lppvtgpppp lpplqpagmd appnsatssv ptvvttgihh
      421 qpppappslf taetydtdgy npeapsitnt srpmyrhrvh aqrpnliglt sgdmdlppre
      481 kppnkssmri vvdaesrkrt igagdggvpt kktwfdkqnf nrtnspgfqk kvqfgnentk
      541 lelrkippel nnisklnehf skfgnlvnlq vayqgdpega liqfatheea kkaissteav
      601 lnnrfikvyw hregtapqiq ataqkviqpl vqqpslpvvk qsvkerlgpv pasniepaea
      661 qsantevtqn vtklsvkdrl gfvskpvtpt tekvlststg ltktvynpaa lkaaqkslpv
      721 vstsvldsne aqkkkqealr lqqdvrkkkq eilekhietq kmlisklekn kamksedkae
      781 imktleiltn sitklkdelk gvspgagats lksmktktqm qkelldteld lykkmqagee
      841 vtelrrkyte lqleaakrgi lssvrgrgvh argrgasrsr grgirgrgrg rgvpvhavvd
      901 hrpraleisa ftesdredll phfaqygeie dcqiddsslh avitfktrae aeaaaihgsr
      961 fkgqelklaw nkpvattsav epeeaepeee efqeeslvdd sllqdddeee ednesrswrr
//
LOCUS       XP_053912725            1020 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA-binding protein 26 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912725
VERSION     XP_053912725.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056750.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1020
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1020
                     /product="RNA-binding protein 26 isoform X3"
                     /calculated_mol_wt=114485
     Region          11..76
                     /region_name="PWI"
                     /note="PWI domain; pfam01480"
                     /db_xref="CDD:460224"
     Region          <292..312
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     Region          538..613
                     /region_name="RRM1_RBM26"
                     /note="RNA recognition motif 1 (RRM1) found in vertebrate
                     RNA-binding protein 26 (RBM26); cd12516"
                     /db_xref="CDD:409938"
     Region          <709..>860
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          899..970
                     /region_name="RRM2_RBM26_like"
                     /note="RNA recognition motif 2 (RRM2) found in vertebrate
                     RNA-binding protein 26 (RBM26) and similar proteins;
                     cd12258"
                     /db_xref="CDD:409703"
     CDS             1..1020
                     /gene="RBM26"
                     /coded_by="XM_054056750.1:338..3400"
                     /db_xref="GeneID:104068392"
ORIGIN      
        1 mvvkmiienf ealkswlskt lepicdadps alakyvlalv kkdksekelk alcvdqldvf
       61 lqketqifve klfdavntks ylpppeqpss gslkveffqh qeketkkeei vkeeerekkf
      121 srrlnhsppq sssryrdtrs rderkkders rkrdydrnpp rrdsyrdryn rrrgrsrsys
      181 rsrsrswske rlrdrdrdrs rsrsrtrsre rdlgkpkydl drtdplenny tpvssvtnis
      241 sghypvptls stitviapah hgnnttesws efheeqldhn sygrpplpkk rcrdydekgf
      301 cmrgdmcpfd hgsdpvvved vnlpgilpfp aqppvvegpp ppglpppppi lspppvnlrp
      361 pvpppgplpp slppvtgppp plpplqpagm dappnsatss vptvvttgih hqpppappsl
      421 ftagvvlrlc pqetydtdgy npeapsitnt srpmyrhrvh aqrpnliglt sgdmdlppre
      481 kppnkssmri vvdaesrkrt igagdggvpt kktwfdkqnf nrtnspgfqk kvqfgnentk
      541 lelrkippel nnisklnehf skfgnlvnlq vayqgdpega liqfatheea kkaissteav
      601 lnnrfikvyw hregtapqiq ataqkviqpl vqqpslpvvk qsvkerlgpv pasniepaea
      661 qsantevtqn vtklsvkdrl gfvskpvtpt tekvlststg ltktvynpaa lkaaqkslpv
      721 vstsvldsne aqkkkqealr lqqdvrkkkq eilekhietq kmlisklekn kamksedkae
      781 imktleiltn sitklkdelk gvspgagats lksmktktqm qkelldteld lykkmqagee
      841 vtelrrkyte lqleaakrgi lssvrgrgvh argrgasrsr grgirgrgrg rgvpvhavvd
      901 hrpraleisa ftesdredll phfaqygeie dcqiddsslh avitfktrae aeaaaihgsr
      961 fkgqelklaw nkpvattsav epeeaepeee efqeeslvdd sllqdddeee ednesrswrr
//
LOCUS       XP_053912726            1011 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA-binding protein 26 isoform X4 [Cuculus canorus].
ACCESSION   XP_053912726
VERSION     XP_053912726.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056751.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1011
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1011
                     /product="RNA-binding protein 26 isoform X4"
                     /calculated_mol_wt=113519
     Region          11..76
                     /region_name="PWI"
                     /note="PWI domain; pfam01480"
                     /db_xref="CDD:460224"
     Region          <292..312
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     Region          529..604
                     /region_name="RRM1_RBM26"
                     /note="RNA recognition motif 1 (RRM1) found in vertebrate
                     RNA-binding protein 26 (RBM26); cd12516"
                     /db_xref="CDD:409938"
     Region          <700..>851
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          890..961
                     /region_name="RRM2_RBM26_like"
                     /note="RNA recognition motif 2 (RRM2) found in vertebrate
                     RNA-binding protein 26 (RBM26) and similar proteins;
                     cd12258"
                     /db_xref="CDD:409703"
     CDS             1..1011
                     /gene="RBM26"
                     /coded_by="XM_054056751.1:337..3372"
                     /db_xref="GeneID:104068392"
ORIGIN      
        1 mvvkmiienf ealkswlskt lepicdadps alakyvlalv kkdksekelk alcvdqldvf
       61 lqketqifve klfdavntks ylpppeqpss gslkveffqh qeketkkeei vkeeerekkf
      121 srrlnhsppq sssryrdtrs rderkkders rkrdydrnpp rrdsyrdryn rrrgrsrsys
      181 rsrsrswske rlrdrdrdrs rsrsrtrsre rdlgkpkydl drtdplenny tpvssvtnis
      241 sghypvptls stitviapah hgnnttesws efheeqldhn sygrpplpkk rcrdydekgf
      301 cmrgdmcpfd hgsdpvvved vnlpgilpfp aqppvvegpp ppglpppppi lspppvnlrp
      361 pvpppgplpp slppvtgppp plpplqpagm dappnsatss vptvvttgih hqpppappsl
      421 ftaetydtdg ynpeapsitn tsrpmyrhrv haqrpnligl tsgdmdlppr ekppnkssmr
      481 ivvdaesrkr tigagdggvp tkktwfdkqn fnrtnspgfq kkvqfgnent klelrkippe
      541 lnnisklneh fskfgnlvnl qvayqgdpeg aliqfathee akkaisstea vlnnrfikvy
      601 whregtapqi qataqkviqp lvqqpslpvv kqsvkerlgp vpasniepae aqsantevtq
      661 nvtklsvkdr lgfvskpvtp ttekvlstst gltktvynpa alkaaqkslp vvstsvldsn
      721 eaqkkkqeal rlqqdvrkkk qeilekhiet qkmlisklek nkamksedka eimktleilt
      781 nsitklkdel kgvspgagat slksmktktq mqkelldtel dlykkmqage evtelrrkyt
      841 elqleaakrg ilssvrgrgv hargrgasrs rgrgirgrgr grgvpvhavv dhrpraleis
      901 aftesdredl lphfaqygei edcqiddssl havitfktra eaeaaaihgs rfkgqelkla
      961 wnkpvattsa vepeeaepee eefqeeslvd dsllqdddee eednesrswr r
//
LOCUS       XP_053912727             986 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA-binding protein 26 isoform X5 [Cuculus canorus].
ACCESSION   XP_053912727
VERSION     XP_053912727.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056752.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..986
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..986
                     /product="RNA-binding protein 26 isoform X5"
                     /calculated_mol_wt=111051
     Region          11..76
                     /region_name="PWI"
                     /note="PWI domain; pfam01480"
                     /db_xref="CDD:460224"
     Region          <301..321
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     Region          547..622
                     /region_name="RRM1_RBM26"
                     /note="RNA recognition motif 1 (RRM1) found in vertebrate
                     RNA-binding protein 26 (RBM26); cd12516"
                     /db_xref="CDD:409938"
     Region          <703..>826
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     Region          865..936
                     /region_name="RRM2_RBM26_like"
                     /note="RNA recognition motif 2 (RRM2) found in vertebrate
                     RNA-binding protein 26 (RBM26) and similar proteins;
                     cd12258"
                     /db_xref="CDD:409703"
     CDS             1..986
                     /gene="RBM26"
                     /coded_by="XM_054056752.1:338..3298"
                     /db_xref="GeneID:104068392"
ORIGIN      
        1 mvvkmiienf ealkswlskt lepicdadps alakyvlalv kkdksekelk alcvdqldvf
       61 lqketqifve klfdavntks ylpppeqpss gslkveffqh qeketkkeei vkeeerekkf
      121 srrlnhsppq sssryrdtrs rderkkders rkrdydrnpp rrdsyrdryn rrrgrsrsys
      181 rsrsrswske rlrdrdrdrs rsrsrtrsrg snswslryer dlgkpkydld rtdplennyt
      241 pvssvtniss ghypvptlss titviapahh gnntteswse fheeqldhns ygrpplpkkr
      301 crdydekgfc mrgdmcpfdh gsdpvvvedv nlpgilpfpa qppvvegppp pglpppppil
      361 spppvnlrpp vpppgplpps lppvtgpppp lpplqpagmd appnsatssv ptvvttgihh
      421 qpppappslf tagvvlrlcp qetydtdgyn peapsitnts rpmyrhrvha qrpnliglts
      481 gdmdlpprek ppnkssmriv vdaesrkrti gagdggvptk ktwfdkqnfn rtnspgfqkk
      541 vqfgnentkl elrkippeln nisklnehfs kfgnlvnlqv ayqgdpegal iqfatheeak
      601 kaissteavl nnrfikvywh regtapqiqa taqkviqplv qqpslpvvkq svkerlgpvp
      661 asniepaeaq santevtqnv tklsvkdrlg fvskpvtptt ekealrlqqd vrkkkqeile
      721 khietqkmli skleknkamk sedkaeimkt leiltnsitk lkdelkgvsp gagatslksm
      781 ktktqmqkel ldteldlykk mqageevtel rrkytelqle aakrgilssv rgrgvhargr
      841 gasrsrgrgi rgrgrgrgvp vhavvdhrpr aleisaftes dredllphfa qygeiedcqi
      901 ddsslhavit fktraeaeaa aihgsrfkgq elklawnkpv attsavepee aepeeeefqe
      961 eslvddsllq dddeeeedne srswrr
//
LOCUS       XP_053912728             889 aa            linear   VRT 09-MAR-2023
DEFINITION  probable ribonuclease ZC3H12C isoform X1 [Cuculus canorus].
ACCESSION   XP_053912728
VERSION     XP_053912728.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056753.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..889
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..889
                     /product="probable ribonuclease ZC3H12C isoform X1"
                     /calculated_mol_wt=100179
     Region          167..208
                     /region_name="UBA_6"
                     /note="UBA-like domain; pfam18039"
                     /db_xref="CDD:407876"
     Region          254..384
                     /region_name="PIN_Zc3h12-like"
                     /note="PRORP-like PIN domain of ribonuclease Zc3h12a and
                     related proteins; cd18729"
                     /db_xref="CDD:350296"
     Region          421..439
                     /region_name="zf-CCCH_2"
                     /note="RNA-binding, Nab2-type zinc finger; pfam14608"
                     /db_xref="CDD:464217"
     Region          841..884
                     /region_name="Regnase_1_C"
                     /note="Endoribonuclease Regnase 1/ ZC3H12 C-terminal
                     domain; pfam18561"
                     /db_xref="CDD:465803"
     CDS             1..889
                     /gene="ZC3H12C"
                     /coded_by="XM_054056753.1:83..2752"
                     /db_xref="GeneID:104055333"
ORIGIN      
        1 msvcfpaney vtlyiqeykk dskvesstcs sfmglkdhlg hdlghlyvas tgtqinaivp
       61 wsmaekpamd kvnsrkddvd keaseetsgs sscdseestn sdndserlnn saseshllpk
      121 thrqlcrspc lephilkrne ilqdfsieep qiipkevkkp pdvvkeyqtk lefalklgys
      181 eeqvqlvlnk lgtdalindi lgelvklgnk tetdqtvtna ntsvmreass iesqrsespl
      241 qedvtedgds lrpividgsn vamshgnkev fscrgiklav dwflekghkd vtvfvpawrk
      301 eqsrpdalit dqeilrklek ekilvftpsr rvqgrrvvcy ddrfivklaf esdgiivsnd
      361 nyrdlanekp ewkkfiderl lmysfvndkf mppddplgrh gpsldnflrk kpivpehkkq
      421 pcpygkkcty ghkckyyhpe rgnqpqrsva delramsrst aakttseggl vksnsvpcst
      481 kndgtselkr aapkrqsdps irtqvyqdle eklptknkle trsvpslvsi pssstakpqs
      541 tapltnglps gvhfptqdqr pqgqyptvmm gtknhgtpmp ydqypkcesp vdvgyysmls
      601 aysnlsisgp rsperrfsld tdyrissvas dcssegsvsc gssdsyvgyn drsymsspdp
      661 qleenlkcqh mhphgrlntq pflqsyhepl trvqsyshee pkhhykppip ymavhlqhpt
      721 vsarsscpnd ystsqssshs ktmhmgralv stridsisds rlydnsplrh rkpysgqdgl
      781 gswdrqsygm daygyrqtys lpsnptqpcy eqfafqslpe qqdqtwrvpy cgipqdpprh
      841 qdtrekvyin lcnifppdlv rivmkknphv mdaqqlaaai lveksqlgy
//
LOCUS       XP_009554737             857 aa            linear   VRT 09-MAR-2023
DEFINITION  probable ribonuclease ZC3H12C isoform X2 [Cuculus canorus].
ACCESSION   XP_009554737
VERSION     XP_009554737.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556442.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..857
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..857
                     /product="probable ribonuclease ZC3H12C isoform X2"
                     /calculated_mol_wt=96512
     Region          135..176
                     /region_name="UBA_6"
                     /note="UBA-like domain; pfam18039"
                     /db_xref="CDD:407876"
     Region          222..352
                     /region_name="PIN_Zc3h12-like"
                     /note="PRORP-like PIN domain of ribonuclease Zc3h12a and
                     related proteins; cd18729"
                     /db_xref="CDD:350296"
     Region          389..407
                     /region_name="zf-CCCH_2"
                     /note="RNA-binding, Nab2-type zinc finger; pfam14608"
                     /db_xref="CDD:464217"
     Region          809..852
                     /region_name="Regnase_1_C"
                     /note="Endoribonuclease Regnase 1/ ZC3H12 C-terminal
                     domain; pfam18561"
                     /db_xref="CDD:465803"
     CDS             1..857
                     /gene="ZC3H12C"
                     /coded_by="XM_009556442.2:151..2724"
                     /db_xref="GeneID:104055333"
ORIGIN      
        1 mglkdhlghd lghlyvastg tqinaivpws maekpamdkv nsrkddvdke aseetsgsss
       61 cdseestnsd ndserlnnsa seshllpkth rqlcrspcle philkrneil qdfsieepqi
      121 ipkevkkppd vvkeyqtkle falklgysee qvqlvlnklg tdalindilg elvklgnkte
      181 tdqtvtnant svmreassie sqrsesplqe dvtedgdslr pividgsnva mshgnkevfs
      241 crgiklavdw flekghkdvt vfvpawrkeq srpdalitdq eilrklekek ilvftpsrrv
      301 qgrrvvcydd rfivklafes dgiivsndny rdlanekpew kkfiderllm ysfvndkfmp
      361 pddplgrhgp sldnflrkkp ivpehkkqpc pygkkctygh kckyyhperg nqpqrsvade
      421 lramsrstaa kttsegglvk snsvpcstkn dgtselkraa pkrqsdpsir tqvyqdleek
      481 lptknkletr svpslvsips sstakpqsta pltnglpsgv hfptqdqrpq gqyptvmmgt
      541 knhgtpmpyd qypkcespvd vgyysmlsay snlsisgprs perrfsldtd yrissvasdc
      601 ssegsvscgs sdsyvgyndr symsspdpql eenlkcqhmh phgrlntqpf lqsyhepltr
      661 vqsysheepk hhykppipym avhlqhptvs arsscpndys tsqssshskt mhmgralvst
      721 ridsisdsrl ydnsplrhrk pysgqdglgs wdrqsygmda ygyrqtyslp snptqpcyeq
      781 fafqslpeqq dqtwrvpycg ipqdpprhqd trekvyinlc nifppdlvri vmkknphvmd
      841 aqqlaaailv eksqlgy
//
LOCUS       XP_053912730             164 aa            linear   VRT 09-MAR-2023
DEFINITION  glycoprotein Xg [Cuculus canorus].
ACCESSION   XP_053912730
VERSION     XP_053912730.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056755.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..164
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..164
                     /product="glycoprotein Xg"
                     /calculated_mol_wt=17385
     Region          25..161
                     /region_name="CD99L2"
                     /note="CD99 antigen like protein 2; pfam12301"
                     /db_xref="CDD:463526"
     CDS             1..164
                     /gene="XG"
                     /coded_by="XM_054056755.1:298..792"
                     /db_xref="GeneID:104063746"
ORIGIN      
        1 mgklrsilll clgfllvhvr gqrdfdlada ldhpddiitr rptvirrptr pvlnndlhlg
       61 dalgggdiph kplypplppr pgsysnsggf ddsdlidgkp lppfvpgeds hhynhggntd
      121 sgliagvtsp lisalvilvv gsiaaysayk nkrlcfkpqg gaav
//
LOCUS       XP_053912731             334 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-(1,3)-fucosyltransferase 4 [Cuculus canorus].
ACCESSION   XP_053912731
VERSION     XP_053912731.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056756.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..334
                     /product="alpha-(1,3)-fucosyltransferase 4"
                     /calculated_mol_wt=38530
     Region          43..145
                     /region_name="Glyco_tran_10_N"
                     /note="Fucosyltransferase, N-terminal; pfam17039"
                     /db_xref="CDD:465336"
     Region          156..331
                     /region_name="Glyco_transf_10"
                     /note="Glycosyltransferase family 10 (fucosyltransferase)
                     C-term; pfam00852"
                     /db_xref="CDD:459962"
     CDS             1..334
                     /gene="FUT4"
                     /coded_by="XM_054056756.1:1..1005"
                     /db_xref="GeneID:104064185"
ORIGIN      
        1 meargrrrrc glgarrwaaa laaaagllal csrlpepepr gevtvllwwe pfgrsprpae
       61 cprcrlsaer srlgeahavl fhhrdlalrg aralprgapa rpprqrwvwm nfespshspg
      121 lsdlggifnw tmsyrrdsdv fvpygylrap prpfvlprkt rlvawvisnw neeharvryy
      181 rrlkehlaid vygargmeld rggvvetvss ykfylafens qhtdyitekl wrnafaasav
      241 pvvlgprran yerfippdsf ihvddfsspq llatylkfld knksnyrryf awrkkyevhv
      301 tsfwdehfck vceavraagn qiktvhdlag wfes
//
LOCUS       XP_009565036             455 aa            linear   VRT 09-MAR-2023
DEFINITION  tapasin-related protein isoform X1 [Cuculus canorus].
ACCESSION   XP_009565036
VERSION     XP_009565036.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566741.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009565036.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..455
                     /product="tapasin-related protein isoform X1"
                     /calculated_mol_wt=48912
     Region          202..290
                     /region_name="V-set"
                     /note="Immunoglobulin V-set domain; pfam07686"
                     /db_xref="CDD:462230"
     Region          307..406
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          324..328
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409428"
     Region          339..343
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409428"
     Region          375..379
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409428"
     Region          389..394
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409428"
     Region          402..405
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409428"
     CDS             1..455
                     /gene="TAPBPL"
                     /coded_by="XM_009566741.2:143..1510"
                     /db_xref="GeneID:104064408"
ORIGIN      
        1 magglelvcg allllaagpa kaptpvppfr radialscsy leentkatmh afgslsserp
       61 atlvlrnisv rdgqnldeit eykvpqknpv ssspivfeas aqsvsiphae sllhadcdee
      121 vnckispysl qqagegpcha swfmatlqls sgisitlvlr gplcssqedd atlhpklrip
      181 mseegtlltt vemqlsshnt flrthlgsti tldchfelap ssslsslewr rqhqgsshsl
      241 fqyqegntgp evqpkvhvdv aellgsgdas fslqgvsved egtyicgvst llhqaqliiq
      301 lhvaepprvh vtpaavsfeg gvtatltcti agyypldvsv swtqktpedd meiplpnthf
      361 sshqrsqdgt ysitsylsis sataqapaiy schvshaala episvsahlk apeqteserl
      421 lgafiatiif iivlfivlrr raakpkseql lrase
//
LOCUS       XP_053912734             423 aa            linear   VRT 09-MAR-2023
DEFINITION  tapasin-related protein isoform X2 [Cuculus canorus].
ACCESSION   XP_053912734
VERSION     XP_053912734.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056759.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..423
                     /product="tapasin-related protein isoform X2"
                     /calculated_mol_wt=45384
     Region          202..290
                     /region_name="V-set"
                     /note="Immunoglobulin V-set domain; pfam07686"
                     /db_xref="CDD:462230"
     Region          307..389
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          324..328
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409428"
     Region          339..343
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409428"
     Region          375..379
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409428"
     CDS             1..423
                     /gene="TAPBPL"
                     /coded_by="XM_054056759.1:143..1414"
                     /db_xref="GeneID:104064408"
ORIGIN      
        1 magglelvcg allllaagpa kaptpvppfr radialscsy leentkatmh afgslsserp
       61 atlvlrnisv rdgqnldeit eykvpqknpv ssspivfeas aqsvsiphae sllhadcdee
      121 vnckispysl qqagegpcha swfmatlqls sgisitlvlr gplcssqedd atlhpklrip
      181 mseegtlltt vemqlsshnt flrthlgsti tldchfelap ssslsslewr rqhqgsshsl
      241 fqyqegntgp evqpkvhvdv aellgsgdas fslqgvsved egtyicgvst llhqaqliiq
      301 lhvaepprvh vtpaavsfeg gvtatltcti agyypldvsv swtqktpedd meiplpnthf
      361 sshqrsqdgt ysitsylsis sataqskqnq kdcwglsllp sfsslssslc sgeeqlnqsl
      421 ssf
//
LOCUS       XP_009563851             224 aa            linear   VRT 09-MAR-2023
DEFINITION  retinoschisin [Cuculus canorus].
ACCESSION   XP_009563851
VERSION     XP_009563851.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565556.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..224
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..224
                     /product="retinoschisin"
                     /calculated_mol_wt=25409
     Region          68..217
                     /region_name="FA58C"
                     /note="Coagulation factor 5/8 C-terminal domain, discoidin
                     domain; Cell surface-attached carbohydrate-binding domain,
                     present in eukaryotes and assumed to have horizontally
                     transferred to eubacterial genomes; cd00057"
                     /db_xref="CDD:238014"
     Site            order(113,141,146)
                     /site_type="other"
                     /note="sugar binding site [chemical binding]"
                     /db_xref="CDD:238014"
     CDS             1..224
                     /gene="RS1"
                     /coded_by="XM_009565556.2:72..746"
                     /db_xref="GeneID:104063388"
ORIGIN      
        1 mrfkmgsvll sllfwykavl alspgederl elwhskackc dcqggpnsvw ssgtnslecm
       61 pecpyhkplg fesgavtpdq iscsnpeqyi gwysswtank arlngqgfgc awlskyqdng
      121 qwlqidlkev kvisgiltqg rcdadewmtk ysvqyrtden lnwvyykdqt gnnrvfygns
      181 drsssvqnll rppivaryir liplgwhvri airmellecl gkcg
//
LOCUS       XP_053912735             138 aa            linear   VRT 09-MAR-2023
DEFINITION  high mobility group protein HMGI-C isoform X1 [Cuculus canorus].
ACCESSION   XP_053912735
VERSION     XP_053912735.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056760.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..138
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..138
                     /product="high mobility group protein HMGI-C isoform X1"
                     /calculated_mol_wt=14968
     Region          <2..71
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..138
                     /gene="HMGA2"
                     /coded_by="XM_054056760.1:208..624"
                     /db_xref="GeneID:104061427"
ORIGIN      
        1 msaqgegpgq pstaaqeqpa taepqkrgrg rprkqpqept gepspkrprg rpkgsknksp
       61 skaaqkkaea tgekrprgrp rkwvvnsnla cfvvtknhfh maqekcmvdt gvavskqtrq
      121 sgdkqlhnsy lfgevcnv
//
LOCUS       XP_009561667             109 aa            linear   VRT 09-MAR-2023
DEFINITION  high mobility group protein HMGI-C isoform X2 [Cuculus canorus].
ACCESSION   XP_009561667
VERSION     XP_009561667.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563372.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..109
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..109
                     /product="high mobility group protein HMGI-C isoform X2"
                     /calculated_mol_wt=11786
     CDS             1..109
                     /gene="HMGA2"
                     /coded_by="XM_009563372.2:208..537"
                     /db_xref="GeneID:104061427"
ORIGIN      
        1 msaqgegpgq pstaaqeqpa taepqkrgrg rprkqpqept gepspkrprg rpkgsknksp
       61 skaaqkkaea tgekrprgrp rkwpqqvvqk kpaqeeteet ssqesaeed
//
LOCUS       XP_053912736             102 aa            linear   VRT 09-MAR-2023
DEFINITION  high mobility group protein HMGI-C isoform X3 [Cuculus canorus].
ACCESSION   XP_053912736
VERSION     XP_053912736.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056761.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..102
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..102
                     /product="high mobility group protein HMGI-C isoform X3"
                     /calculated_mol_wt=11163
     CDS             1..102
                     /gene="HMGA2"
                     /coded_by="XM_054056761.1:208..516"
                     /db_xref="GeneID:104061427"
ORIGIN      
        1 msaqgegpgq pstaaqeqpa taepqkrgrg rprkqpqept gepspkrprg rpkgsknksp
       61 skaaqkkaea tgekrprgrp rkwfklgswi pslcvmkwrl ml
//
LOCUS       XP_053912737              80 aa            linear   VRT 09-MAR-2023
DEFINITION  high mobility group protein HMGI-C isoform X4 [Cuculus canorus].
ACCESSION   XP_053912737
VERSION     XP_053912737.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056762.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..80
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..80
                     /product="high mobility group protein HMGI-C isoform X4"
                     /calculated_mol_wt=8702
     CDS             1..80
                     /gene="HMGA2"
                     /coded_by="XM_054056762.1:208..450"
                     /db_xref="GeneID:104061427"
ORIGIN      
        1 msaqgegpgq pstaaqeqpa taepqkrgrg rprkqpqkae atgekrprgr prkwpqqvvq
       61 kkpaqeetee tssqesaeed
//
LOCUS       XP_053912738             281 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SOX-21 [Cuculus canorus].
ACCESSION   XP_053912738
VERSION     XP_053912738.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056763.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..281
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..281
                     /product="transcription factor SOX-21"
                     /calculated_mol_wt=28896
     Region          6..85
                     /region_name="HMG-box_SoxB"
                     /note="high mobility group (HMG)-box found in group B
                     SRY-related high-mobility group (HMG) box (Sox)
                     transcription factors; cd01388"
                     /db_xref="CDD:438790"
     Site            order(7,9..10,12..16,20,23..24,31..36,39..40,43,46..47,54,
                     65,77..82)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438790"
     Region          77..>95
                     /region_name="SOXp"
                     /note="SOX transcription factor; pfam12336"
                     /db_xref="CDD:463537"
     CDS             1..281
                     /gene="SOX21"
                     /coded_by="XM_054056763.1:12..857"
                     /db_xref="GeneID:128850977"
ORIGIN      
        1 mskpvdhvkr pmnafmvwsr aqrrkmaqen pkmhnseisk rlgaewkllt esekrpfide
       61 akrlramhmk ehpdykyrpr rkpktllkkd kfafpvpygl ggvaehehph glkagglhgg
      121 aaaglvpesl lanpekaaaa aaaaaarvff pqsaaaaaaa aaaaaagspy slldlgskma
      181 eisssssssg sglpyasslg ypgaggagaf hgaaaaaaaa aaaagghths hpspgnpgym
      241 ipcncsawpg pglqpplayi llpgmgkpql dpypaayaaa l
//
LOCUS       XP_053912739             199 aa            linear   VRT 09-MAR-2023
DEFINITION  putative SCAN domain-containing protein SCAND2P isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912739
VERSION     XP_053912739.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056764.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..199
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..199
                     /product="putative SCAN domain-containing protein SCAND2P
                     isoform X1"
                     /calculated_mol_wt=21265
     CDS             1..199
                     /gene="LOC128850978"
                     /coded_by="XM_054056764.1:74..673"
                     /db_xref="GeneID:128850978"
ORIGIN      
        1 megdprrgie arprcgervp rppgsplhlv qprsgasggr mlvrrpgkel tldwsrhfhi
       61 pqgrprkpre twrlsekger rgrrsapqpa rnlaevcpag gnreetarrv casggrsgaa
      121 asgaargpga pepaphrpps pelrdgsgwa ltaappgarr tgdpqpreep rrsptpstsr
      181 lfpcrsaarg rsaergaap
//
LOCUS       XP_053912741             159 aa            linear   VRT 09-MAR-2023
DEFINITION  putative SCAN domain-containing protein SCAND2P isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912741
VERSION     XP_053912741.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056766.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..159
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..159
                     /product="putative SCAN domain-containing protein SCAND2P
                     isoform X2"
                     /calculated_mol_wt=16993
     CDS             1..159
                     /gene="LOC128850978"
                     /coded_by="XM_054056766.1:43..522"
                     /db_xref="GeneID:128850978"
ORIGIN      
        1 mlvrrpgkel tldwsrhfhi pqgrprkpre twrlsekger rgrrsapqpa rnlaevcpag
       61 gnreetarrv casggrsgaa asgaargpga pepaphrpps pelrdgsgwa ltaappgarr
      121 tgdpqpreep rrsptpstsr lfpcrsaarg rsaergaap
//
LOCUS       XP_053912742             383 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription elongation factor A N-terminal and central
            domain-containing protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053912742
VERSION     XP_053912742.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056767.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..383
                     /product="transcription elongation factor A N-terminal and
                     central domain-containing protein isoform X1"
                     /calculated_mol_wt=43293
     Region          33..375
                     /region_name="TFSII"
                     /note="transcription elongation factor S-II; TIGR01385"
                     /db_xref="CDD:273592"
     CDS             1..383
                     /gene="TCEANC"
                     /coded_by="XM_054056767.1:21..1172"
                     /db_xref="GeneID:104054907"
ORIGIN      
        1 maavpepevg gtcragtrga glkisdhkni vhrahciekl lsennfqdvk dhlkelegid
       61 mtidylqgte vakavyrvlk scpsaelkkk akqllsrwka lykdncvqst qvqksvslsv
      121 keetehlsvi preqllsegp cqqeaihats skilvpsqtv knvvhndaeg smnqlsysge
      181 lhidnedfkp lvneaslqrd pmralrykct dllykalmgs aknkegtdkw lelskqieeh
      241 ifalhakndk kykncirski anlknpksch lkhnlfsgtl spkafaemtv memasdelkq
      301 lralytessv qehqlpqvfn gtktnkikcr rcekfdctvt miargtlflp gwvrstnpde
      361 qmltyvicne cgeqwyhsrw icl
//
LOCUS       XP_053912743             323 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription elongation factor A N-terminal and central
            domain-containing protein isoform X2 [Cuculus canorus].
ACCESSION   XP_053912743
VERSION     XP_053912743.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056768.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..323
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..323
                     /product="transcription elongation factor A N-terminal and
                     central domain-containing protein isoform X2"
                     /calculated_mol_wt=36762
     Region          1..315
                     /region_name="TFSII"
                     /note="transcription elongation factor S-II; TIGR01385"
                     /db_xref="CDD:273592"
     CDS             1..323
                     /gene="TCEANC"
                     /coded_by="XM_054056768.1:246..1217"
                     /db_xref="GeneID:104054907"
ORIGIN      
        1 mtidylqgte vakavyrvlk scpsaelkkk akqllsrwka lykdncvqst qvqksvslsv
       61 keetehlsvi preqllsegp cqqeaihats skilvpsqtv knvvhndaeg smnqlsysge
      121 lhidnedfkp lvneaslqrd pmralrykct dllykalmgs aknkegtdkw lelskqieeh
      181 ifalhakndk kykncirski anlknpksch lkhnlfsgtl spkafaemtv memasdelkq
      241 lralytessv qehqlpqvfn gtktnkikcr rcekfdctvt miargtlflp gwvrstnpde
      301 qmltyvicne cgeqwyhsrw icl
//
LOCUS       XP_053912744             323 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription elongation factor A N-terminal and central
            domain-containing protein isoform X2 [Cuculus canorus].
ACCESSION   XP_053912744
VERSION     XP_053912744.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056769.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..323
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..323
                     /product="transcription elongation factor A N-terminal and
                     central domain-containing protein isoform X2"
                     /calculated_mol_wt=36762
     Region          1..315
                     /region_name="TFSII"
                     /note="transcription elongation factor S-II; TIGR01385"
                     /db_xref="CDD:273592"
     CDS             1..323
                     /gene="TCEANC"
                     /coded_by="XM_054056769.1:248..1219"
                     /db_xref="GeneID:104054907"
ORIGIN      
        1 mtidylqgte vakavyrvlk scpsaelkkk akqllsrwka lykdncvqst qvqksvslsv
       61 keetehlsvi preqllsegp cqqeaihats skilvpsqtv knvvhndaeg smnqlsysge
      121 lhidnedfkp lvneaslqrd pmralrykct dllykalmgs aknkegtdkw lelskqieeh
      181 ifalhakndk kykncirski anlknpksch lkhnlfsgtl spkafaemtv memasdelkq
      241 lralytessv qehqlpqvfn gtktnkikcr rcekfdctvt miargtlflp gwvrstnpde
      301 qmltyvicne cgeqwyhsrw icl
//
LOCUS       XP_053912745             323 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription elongation factor A N-terminal and central
            domain-containing protein isoform X2 [Cuculus canorus].
ACCESSION   XP_053912745
VERSION     XP_053912745.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056770.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..323
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..323
                     /product="transcription elongation factor A N-terminal and
                     central domain-containing protein isoform X2"
                     /calculated_mol_wt=36762
     Region          1..315
                     /region_name="TFSII"
                     /note="transcription elongation factor S-II; TIGR01385"
                     /db_xref="CDD:273592"
     CDS             1..323
                     /gene="TCEANC"
                     /coded_by="XM_054056770.1:3105..4076"
                     /db_xref="GeneID:104054907"
ORIGIN      
        1 mtidylqgte vakavyrvlk scpsaelkkk akqllsrwka lykdncvqst qvqksvslsv
       61 keetehlsvi preqllsegp cqqeaihats skilvpsqtv knvvhndaeg smnqlsysge
      121 lhidnedfkp lvneaslqrd pmralrykct dllykalmgs aknkegtdkw lelskqieeh
      181 ifalhakndk kykncirski anlknpksch lkhnlfsgtl spkafaemtv memasdelkq
      241 lralytessv qehqlpqvfn gtktnkikcr rcekfdctvt miargtlflp gwvrstnpde
      301 qmltyvicne cgeqwyhsrw icl
//
LOCUS       XP_053912746             279 aa            linear   VRT 09-MAR-2023
DEFINITION  NFAT activation molecule 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912746
VERSION     XP_053912746.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056771.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..279
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..279
                     /product="NFAT activation molecule 1 isoform X1"
                     /calculated_mol_wt=30852
     CDS             1..279
                     /gene="NFAM1"
                     /coded_by="XM_054056771.1:81..920"
                     /db_xref="GeneID:104055479"
ORIGIN      
        1 meipdkttsl lpfgssrlva flqpltpmmv tnlkiiflfl wllqcgggsv dvqqkppiqi
       61 allkegisip cqvifpympk yttfsifyyw vnsrgqntsi ysrsenvavp sgkenrtati
      121 sydyrvtplh dtsstgtyyc tvkwnsiqkm gkgvfvlarg tgyvetssgw gtlitftvll
      181 aalsmtatal llwkrkqvlc ptrnqlnilr qkvevqppsa npppspppvy dsldaqqvdv
      241 ysildnntni psvgrsppgk tpkkqatlee ssdtlyeni
//
LOCUS       XP_009554900             278 aa            linear   VRT 09-MAR-2023
DEFINITION  NFAT activation molecule 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_009554900
VERSION     XP_009554900.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556605.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554900.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..278
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..278
                     /product="NFAT activation molecule 1 isoform X2"
                     /calculated_mol_wt=30724
     CDS             1..278
                     /gene="NFAM1"
                     /coded_by="XM_009556605.2:81..917"
                     /db_xref="GeneID:104055479"
ORIGIN      
        1 meipdkttsl lpfgssrlva flqpltpmmv tnlkiiflfl wllqcgggsv dvqqkppiqi
       61 allkegisip cqvifpympk yttfsifyyw vnsrgqntsi ysrsenvavp sgkenrtati
      121 sydyrvtplh dtsstgtyyc tvkwnsiqkm gkgvfvlarg tgyvetssgw gtlitftvll
      181 aalsmtatal llwkrkvlcp trnqlnilrq kvevqppsan pppspppvyd sldaqqvdvy
      241 sildnntnip svgrsppgkt pkkqatlees sdtlyeni
//
LOCUS       XP_053912747             223 aa            linear   VRT 09-MAR-2023
DEFINITION  NFAT activation molecule 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912747
VERSION     XP_053912747.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056772.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..223
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..223
                     /product="NFAT activation molecule 1 isoform X3"
                     /calculated_mol_wt=24622
     CDS             1..223
                     /gene="NFAM1"
                     /coded_by="XM_054056772.1:81..752"
                     /db_xref="GeneID:104055479"
ORIGIN      
        1 meipdkttsl lpfgssrlva flqpltpmmv tnlkiiflfl wllqcgggsv dvqqkppiqi
       61 allkegisip cqvifpympk yttfsifyyw vnsrgqntsi ysrsenvavp sgkenrtati
      121 sydyrvtplh dtsstgtyyc tvkwnsiqkm gkgvfvlarg tgyvetssgw gtlitftvll
      181 aalsmtatal llwkrklscl esggrkhwsl aedveiglrg plg
//
LOCUS       XP_053912748             544 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM124A isoform X1 [Cuculus canorus].
ACCESSION   XP_053912748
VERSION     XP_053912748.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056773.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..544
                     /product="protein FAM124A isoform X1"
                     /calculated_mol_wt=60884
     Region          44..277
                     /region_name="FAM124"
                     /note="FAM124 family; pfam15067"
                     /db_xref="CDD:464482"
     CDS             1..544
                     /gene="FAM124A"
                     /coded_by="XM_054056773.1:64..1698"
                     /db_xref="GeneID:104066179"
ORIGIN      
        1 mekhpggede cvdsgaetgg seysrmssts selsvegiqd pflvsvhiit dpgesktlqq
       61 aidkllawih pdlqlfrvse rrapkkhrkp gkagihqpal aiilflqeey geepilqlhe
      121 tfqqppwhfh htervhgkfl pympcsqdfy tlapetplws irpvhygkei irftiycrse
      181 nfvdilklye lilkrpvcqk ktdfcvfply snmeidiqfs lkklpegqvp mptesavlef
      241 rvkdvgqlvp llpnpcspis edrwqtedhd gnrillqqah swcrksakkk rpypsvstds
      301 rfttlpaflp eshqsvpekp kemsqnkvhh tnglghhlgf sqedlrhsdq gdftrrsssa
      361 ssiswsfqrs kslfclptvn tssasetfhf sepfqflnsg spaarlktwr csprlniddl
      421 egsqetdvdt gmklsfsdls vvsaysvlng fcsdleaslp pqkqtvgktk waatsgrpvs
      481 amhnifesad gplpplsvws sssftsasls kqqsqqssra apcslsdcgs vcpaspakee
      541 efyi
//
LOCUS       XP_053912749             540 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM124A isoform X2 [Cuculus canorus].
ACCESSION   XP_053912749
VERSION     XP_053912749.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056774.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..540
                     /product="protein FAM124A isoform X2"
                     /calculated_mol_wt=60666
     Region          40..273
                     /region_name="FAM124"
                     /note="FAM124 family; pfam15067"
                     /db_xref="CDD:464482"
     CDS             1..540
                     /gene="FAM124A"
                     /coded_by="XM_054056774.1:36..1658"
                     /db_xref="GeneID:104066179"
ORIGIN      
        1 mgptlgenpe isrekeseys rmsstssels vegiqdpflv svhiitdpge sktlqqaidk
       61 llawihpdlq lfrvserrap kkhrkpgkag ihqpalaiil flqeeygeep ilqlhetfqq
      121 ppwhfhhter vhgkflpymp csqdfytlap etplwsirpv hygkeiirft iycrsenfvd
      181 ilklyelilk rpvcqkktdf cvfplysnme idiqfslkkl pegqvpmpte savlefrvkd
      241 vgqlvpllpn pcspisedrw qtedhdgnri llqqahswcr ksakkkrpyp svstdsrftt
      301 lpaflpeshq svpekpkems qnkvhhtngl ghhlgfsqed lrhsdqgdft rrsssassis
      361 wsfqrskslf clptvntssa setfhfsepf qflnsgspaa rlktwrcspr lniddlegsq
      421 etdvdtgmkl sfsdlsvvsa ysvlngfcsd leaslppqkq tvgktkwaat sgrpvsamhn
      481 ifesadgplp plsvwssssf tsaslskqqs qqssraapcs lsdcgsvcpa spakeeefyi
//
LOCUS       XP_053912750             519 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM124A isoform X3 [Cuculus canorus].
ACCESSION   XP_053912750
VERSION     XP_053912750.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056775.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..519
                     /product="protein FAM124A isoform X3"
                     /calculated_mol_wt=58274
     Region          19..252
                     /region_name="FAM124"
                     /note="FAM124 family; pfam15067"
                     /db_xref="CDD:464482"
     CDS             1..519
                     /gene="FAM124A"
                     /coded_by="XM_054056775.1:57..1616"
                     /db_xref="GeneID:104066179"
ORIGIN      
        1 msstsselsv egiqdpflvs vhiitdpges ktlqqaidkl lawihpdlql frvserrapk
       61 khrkpgkagi hqpalaiilf lqeeygeepi lqlhetfqqp pwhfhhterv hgkflpympc
      121 sqdfytlape tplwsirpvh ygkeiirfti ycrsenfvdi lklyelilkr pvcqkktdfc
      181 vfplysnmei diqfslkklp egqvpmptes avlefrvkdv gqlvpllpnp cspisedrwq
      241 tedhdgnril lqqahswcrk sakkkrpyps vstdsrfttl paflpeshqs vpekpkemsq
      301 nkvhhtnglg hhlgfsqedl rhsdqgdftr rsssassisw sfqrskslfc lptvntssas
      361 etfhfsepfq flnsgspaar lktwrcsprl niddlegsqe tdvdtgmkls fsdlsvvsay
      421 svlngfcsdl easlppqkqt vgktkwaats grpvsamhni fesadgplpp lsvwssssft
      481 saslskqqsq qssraapcsl sdcgsvcpas pakeeefyi
//
LOCUS       XP_053912751             267 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein C13orf42 homolog isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912751
VERSION     XP_053912751.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056776.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..267
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..267
                     /product="uncharacterized protein C13orf42 homolog isoform
                     X1"
                     /calculated_mol_wt=30550
     CDS             1..267
                     /gene="C1H13orf42"
                     /coded_by="XM_054056776.1:500..1303"
                     /db_xref="GeneID:128850979"
ORIGIN      
        1 mfkkihsifh pnfhrrnvtd dipycdgtgs avrlirstsm yilggeqekf geplkkykst
       61 tsidscfqqk eedrdwmysk tqdclkylqd llalrktyld ninnlksmhm avdsptstks
      121 sktgmksflp lpskdfskas verkgpqsss dvreaiaffd svianldsdr wwrvpdvdlp
      181 nvdvdfdvat stsehslhsn wilraprrys qdtaqsakaa nqsqrnsqrt ttgsrkrler
      241 hpmylpkave gaystlkfkp ktrkkey
//
LOCUS       XP_053912752             219 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein C13orf42 homolog isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912752
VERSION     XP_053912752.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056777.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..219
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..219
                     /product="uncharacterized protein C13orf42 homolog isoform
                     X2"
                     /calculated_mol_wt=24597
     CDS             1..219
                     /gene="C1H13orf42"
                     /coded_by="XM_054056777.1:500..1159"
                     /db_xref="GeneID:128850979"
ORIGIN      
        1 mfkkihsifh pnfhrrnvtd dipycdgtgs avrlirstsm yilggeqekf geplkkykst
       61 tsidscfqqk eedrdwmysk tqdclkylqd llalrktyld ninnlksmhm avdsptstks
      121 sktgmksflp lpskdfskas verkgpqsss dllpaqvntv yiqtgsfvlp ggthkilpnq
      181 qrlqtslket asgqrlalgr gwkdtqctcp klwkghtal
//
LOCUS       XP_053912754             430 aa            linear   VRT 09-MAR-2023
DEFINITION  probable UDP-sugar transporter protein SLC35A5 [Cuculus canorus].
ACCESSION   XP_053912754
VERSION     XP_053912754.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056779.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..430
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..430
                     /product="probable UDP-sugar transporter protein SLC35A5"
                     /calculated_mol_wt=48456
     Region          31..379
                     /region_name="Nuc_sug_transp"
                     /note="Nucleotide-sugar transporter; pfam04142"
                     /db_xref="CDD:398009"
     CDS             1..430
                     /gene="SLC35A5"
                     /coded_by="XM_054056779.1:199..1491"
                     /db_xref="GeneID:104055787"
ORIGIN      
        1 mkttccsrfv lcskttaytf llggvfialg ssrillmkys anednkydyl pttvnicsev
       61 vklvlcvila lwvkkkegcl dpfeclswkn fwnsmkwsip aflyfldnli vfyvlsylqp
      121 amavlfsnfv iittallfri vlkrklswvq waslvilfls ivaltlgtgg hhqslaahgf
      181 hhnmffslsn hcllytgpee aclekgncva psflhsfqwn vtstmagalk plrlslghll
      241 ilvqcfisal aniynekilk dgdqlaesif vqnsklyafg vlfnglmlgl rtkdrrlien
      301 cgffyghnif svalifvtaf lglsvafilk frdnmfhvmt aqittviita vsfvifdfrp
      361 sleffleapv vllsifiyna skprcleyat lrergklvqg dawerssgdg eeferlnkps
      421 sdmdtdedsl
//
LOCUS       XP_053912755             430 aa            linear   VRT 09-MAR-2023
DEFINITION  probable UDP-sugar transporter protein SLC35A5 [Cuculus canorus].
ACCESSION   XP_053912755
VERSION     XP_053912755.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056780.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..430
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..430
                     /product="probable UDP-sugar transporter protein SLC35A5"
                     /calculated_mol_wt=48456
     Region          31..379
                     /region_name="Nuc_sug_transp"
                     /note="Nucleotide-sugar transporter; pfam04142"
                     /db_xref="CDD:398009"
     CDS             1..430
                     /gene="SLC35A5"
                     /coded_by="XM_054056780.1:138..1430"
                     /db_xref="GeneID:104055787"
ORIGIN      
        1 mkttccsrfv lcskttaytf llggvfialg ssrillmkys anednkydyl pttvnicsev
       61 vklvlcvila lwvkkkegcl dpfeclswkn fwnsmkwsip aflyfldnli vfyvlsylqp
      121 amavlfsnfv iittallfri vlkrklswvq waslvilfls ivaltlgtgg hhqslaahgf
      181 hhnmffslsn hcllytgpee aclekgncva psflhsfqwn vtstmagalk plrlslghll
      241 ilvqcfisal aniynekilk dgdqlaesif vqnsklyafg vlfnglmlgl rtkdrrlien
      301 cgffyghnif svalifvtaf lglsvafilk frdnmfhvmt aqittviita vsfvifdfrp
      361 sleffleapv vllsifiyna skprcleyat lrergklvqg dawerssgdg eeferlnkps
      421 sdmdtdedsl
//
LOCUS       XP_053912756             313 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin-like-conjugating enzyme ATG3 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912756
VERSION     XP_053912756.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056781.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..313
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..313
                     /product="ubiquitin-like-conjugating enzyme ATG3 isoform
                     X1"
                     /calculated_mol_wt=35518
     Region          158..307
                     /region_name="Autophagy_act_C"
                     /note="Autophagocytosis associated protein, active-site
                     domain; pfam03987"
                     /db_xref="CDD:461120"
     CDS             1..313
                     /gene="ATG3"
                     /coded_by="XM_054056781.1:138..1079"
                     /db_xref="GeneID:104055843"
ORIGIN      
        1 mqnvintvkg kalevaeylt pvlkeskfke tgvitpeefv aagdhlvhhc ptwqwasgee
       61 lkvkaylptd kqflvtknvp cykrckqmey sdeqeaiiee ddgdggwvdt fhnagimgat
      121 eavkeitldc kdnikipecs vsceddeede geaadmeeye esglletdda tldtrqivea
      181 nkakadvgge dailqtrtyd lyitydkyyq tprlwlfgyd eqrqpltveh myedisqdhv
      241 kktvtienhp hlppppmcsv hpcrhaevmk kiietvaegg gelgvhmyll iflkfvqavi
      301 ptieydytrh ftm
//
LOCUS       XP_009555324             311 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin-like-conjugating enzyme ATG3 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_009555324
VERSION     XP_009555324.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557029.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..311
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..311
                     /product="ubiquitin-like-conjugating enzyme ATG3 isoform
                     X2"
                     /calculated_mol_wt=35432
     Region          156..305
                     /region_name="Autophagy_act_C"
                     /note="Autophagocytosis associated protein, active-site
                     domain; pfam03987"
                     /db_xref="CDD:461120"
     CDS             1..311
                     /gene="ATG3"
                     /coded_by="XM_009557029.2:16..951"
                     /db_xref="GeneID:104055843"
ORIGIN      
        1 mfvvghpqrr knsahslrls dheskfketg vitpeefvaa gdhlvhhcpt wqwasgeelk
       61 vkaylptdkq flvtknvpcy krckqmeysd eqeaiieedd gdggwvdtfh nagimgatea
      121 vkeitldckd nikipecsvs ceddeedege aadmeeyees glletddatl dtrqiveank
      181 akadvggeda ilqtrtydly itydkyyqtp rlwlfgydeq rqpltvehmy edisqdhvkk
      241 tvtienhphl ppppmcsvhp crhaevmkki ietvaeggge lgvhmyllif lkfvqavipt
      301 ieydytrhft m
//
LOCUS       XP_053912757             956 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 80 [Cuculus canorus].
ACCESSION   XP_053912757
VERSION     XP_053912757.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056782.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..956
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..956
                     /product="coiled-coil domain-containing protein 80"
                     /calculated_mol_wt=109018
     Region          142..270
                     /region_name="DUF4174"
                     /note="Domain of unknown function (DUF4174); pfam13778"
                     /db_xref="CDD:463980"
     Region          621..754
                     /region_name="DUF4174"
                     /note="Domain of unknown function (DUF4174); pfam13778"
                     /db_xref="CDD:463980"
     Region          777..908
                     /region_name="DUF4174"
                     /note="Domain of unknown function (DUF4174); pfam13778"
                     /db_xref="CDD:463980"
     CDS             1..956
                     /gene="CCDC80"
                     /coded_by="XM_054056782.1:651..3521"
                     /db_xref="GeneID:104055788"
ORIGIN      
        1 mnwrpalsla llwaawlvcg sekterlaer gshgvrkvpl ayrapssllr rsgaslrnls
       61 pkpqhpvtkr gssappkapa nllqgeahsq aramgtrmrr vqrltaaaky sksemikdeg
      121 issasqsrvv rfpsgssspn vlasfagknr vwvisaphas egyyrlmmsl lkndvycela
      181 erhiqqivlf heegeeegkv rritnegkil eqpldpalip klmsflklek gkfgmvllkk
      241 tlqveerypy pvrleamyev idqspirkie kmrqkgfiqt ckaagvegqv veegnnggit
      301 qptpggghvq vsakkeeprr snnqptrtkt vrkpmtttva tppptvrttt lpptttttha
      361 ttravttpsh stttttplpt tqrtwttksh stteynrlpv apdattprvt asedfyspvw
      421 kanrrdrqrs hpekhlvatr kpskaaryds ftevptvpsv hytkanvgrf kdnrtdrkdy
      481 nhrdlnatpg qhkptktktp kkktqekils neyedkydps kpssshleee iavgnippkk
      541 gkeskkheri dkpekkkkkd rpdklqksek qskkdkaekk skqdkdrskk nkkgsrtene
      601 dfpksnkklf lhpprksvtd lleyfegkrr lilittpkad ntmyvqqrde ylesfckmat
      661 rkisvitifg tmnnssmkid hfqldnekpm kviededlvd qqliselrke ygmtyndffm
      721 vltdtdmkvk qyyevpiamk svfdlidtfq srikdmerqk kegivckedk kqslesflsr
      781 frwrrrlvvi sapsdedway sqqlaalsgq acnfglrhit ilkllglged iggvlelypi
      841 ngsstvdred ipanlvkdir nyfqispeyf smllvgkdgn vkswypspmw smaivydlid
      901 smqlrrqemt iqqslgmqcp ddeyggygyh syhqgyqegh qddyrhhgsy hhgypy
//
LOCUS       XP_009556210             134 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H2A-beta, sperm [Cuculus canorus].
ACCESSION   XP_009556210
VERSION     XP_009556210.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557915.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556210.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..134
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..134
                     /product="histone H2A-beta, sperm"
                     /calculated_mol_wt=14437
     Region          1..132
                     /region_name="PTZ00017"
                     /note="histone H2A; Provisional"
                     /db_xref="CDD:185399"
     CDS             1..134
                     /gene="LOC104056645"
                     /coded_by="XM_009557915.2:285..689"
                     /db_xref="GeneID:104056645"
ORIGIN      
        1 msgrgkkpal tgkygavqkk nkshkaglqf pvgriyrllr ngnytnrvsp gaaiylaavl
       61 eylsaeimel agnaarenkk aritprhiql avrnddelnk lfssvtiaqg gvmpnihsql
      121 lpkrtgsdaa sseh
//
LOCUS       XP_053912758             404 aa            linear   VRT 09-MAR-2023
DEFINITION  NALCN channel auxiliary factor 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912758
VERSION     XP_053912758.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056783.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..404
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..404
                     /product="NALCN channel auxiliary factor 1 isoform X1"
                     /calculated_mol_wt=44448
     Region          <215..>258
                     /region_name="Mid1"
                     /note="Stretch-activated Ca2+-permeable channel component;
                     pfam12929"
                     /db_xref="CDD:432882"
     CDS             1..404
                     /gene="NALF1"
                     /coded_by="XM_054056783.1:1..1215"
                     /db_xref="GeneID:104062993"
ORIGIN      
        1 mtrgawmcsr qcddglkiwf aprenekpft dseraqkwrl slasllfftv llsdhlwfca
       61 eakftgtgek eqpppeqpep aepelpagmg dpappatrll apaspspgte plgnstgspp
      121 etcpplgsss gqcfsvgdae avcerrgmpg rrrgagqspa pawdltdfyl sfcnsytlwe
      181 lfaglsnpdt lncsldavlr gegscsqcvq ayqrydqhaq ekyeefevml qkylqsdeys
      241 vkscpedckt vykawlcsqy fevtqfhcsn ripckqycle vqtrcpfilp dnddviyggl
      301 ssfictglye nyptnaepec cdvrwgllsd hqskgtikts gstmchrtsl tvssasrlcn
      361 srlklcvlvl illhtvltvs aaqnstglgf ggittledns tnee
//
LOCUS       XP_053912760             337 aa            linear   VRT 09-MAR-2023
DEFINITION  NALCN channel auxiliary factor 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912760
VERSION     XP_053912760.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056785.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..337
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..337
                     /product="NALCN channel auxiliary factor 1 isoform X2"
                     /calculated_mol_wt=37506
     CDS             1..337
                     /gene="NALF1"
                     /coded_by="XM_054056785.1:1..1014"
                     /db_xref="GeneID:104062993"
ORIGIN      
        1 mtrgawmcsr qcddglkiwf aprenekpft dseraqkwrl slasllfftv llsdhlwfca
       61 eakftgtgek eqpppeqpep aepelpagmg dpappatrll apaspspgte plgnstgspp
      121 etcpplgsss gqcfsvgdae avcerrgmpg rrrgagqspa pawdltdfyl sfcnsytlwe
      181 lfaglsnpdt lncsldavlr gegscsqcvq ayqrydqhaq ekyeefevml qkylqsdeys
      241 vkscpedckg sssadsvsvs rhspvshsrm lslesrwtlr lleqferkgm rrqlffvkfs
      301 kaetalkqkt lfdlkclplf gihpvylkhr cmllpiv
//
LOCUS       XP_053912761             167 aa            linear   VRT 09-MAR-2023
DEFINITION  histone H2A-beta, sperm-like [Cuculus canorus].
ACCESSION   XP_053912761
VERSION     XP_053912761.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056786.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..167
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..167
                     /product="histone H2A-beta, sperm-like"
                     /calculated_mol_wt=18243
     Region          38..125
                     /region_name="HFD_H2A"
                     /note="histone-fold domain found in histone H2A and
                     similar proteins; cd00074"
                     /db_xref="CDD:467020"
     Site            order(38..40,51..52,55,59,100,102..104,107)
                     /site_type="other"
                     /note="Hif1 binding site [polypeptide binding]"
                     /db_xref="CDD:467020"
     Site            order(38..40,43,51..52,55,65..68,97..98,100)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:467020"
     Site            order(40..42,47..49,52..53,55..57,65,67,69..70,72..87,
                     89..91,93,98,100..103,106,110,115,118..124)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467020"
     Site            order(59..61,64,104,120,122..125)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:467020"
     Site            order(61,64)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:467020"
     CDS             1..167
                     /gene="LOC128850980"
                     /coded_by="XM_054056786.1:1420..1923"
                     /db_xref="GeneID:128850980"
ORIGIN      
        1 msgaedsytv seqeteseas sseapsersk akvkrcyssr ssragllfpv srverhlrrg
       61 hfakrfaana pvylaavmqc vthelldvag evakksnqrr ispshlkmav qkssalkkll
      121 qdsmlrhcgr avlqservap lsrkkmskkg kssrpraara yataaak
//
LOCUS       XP_053912762             333 aa            linear   VRT 09-MAR-2023
DEFINITION  cell surface glycoprotein CD200 receptor 1-A isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912762
VERSION     XP_053912762.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056787.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..333
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..333
                     /product="cell surface glycoprotein CD200 receptor 1-A
                     isoform X1"
                     /calculated_mol_wt=36834
     Region          60..158
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          68..72
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          80..84
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          123..127
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          137..142
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          150..153
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          <175..233
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          185..189
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409500"
     Region          210..214
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409500"
     Region          222..226
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409500"
     CDS             1..333
                     /gene="LOC104055844"
                     /coded_by="XM_054056787.1:229..1230"
                     /db_xref="GeneID:104055844"
ORIGIN      
        1 mktranmgia gktvcvfvlf titkgvrtvg ngiltswslg esmvlpfkeh rkrhseykrv
       61 satvgnssvl tcspksdmtm vtwrispeag slcilgyrtd enktdrincs dsvdwkfrpd
      121 qdlaleirqv giadegnytc dvaspdgnfp ktyhltvlvp prlilscddh gnpvckaatg
      181 kpaaqiswvl esnstpkeeg hangtvtvls kftaystsmi nttcivfhpt gnqsksvvcq
      241 lpknsfilhv siifciliii tflaviyyik lhsdrlchit kppetsvthf pqddtmevep
      301 yttyvqkeni iynsvsdltv gqnlpqglfq qye
//
LOCUS       XP_053912763             307 aa            linear   VRT 09-MAR-2023
DEFINITION  cell surface glycoprotein CD200 receptor 1-A isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912763
VERSION     XP_053912763.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056788.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..307
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..307
                     /product="cell surface glycoprotein CD200 receptor 1-A
                     isoform X2"
                     /calculated_mol_wt=33885
     Region          34..132
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          42..46
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          54..58
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          97..101
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          111..116
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          124..127
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          <149..207
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          159..163
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409500"
     Region          184..188
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409500"
     Region          196..200
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409500"
     CDS             1..307
                     /gene="LOC104055844"
                     /coded_by="XM_054056788.1:229..1152"
                     /db_xref="GeneID:104055844"
ORIGIN      
        1 mktranmgia gktvcvfvlf titkgvrtve ykrvsatvgn ssvltcspks dmtmvtwris
       61 peagslcilg yrtdenktdr incsdsvdwk frpdqdlale irqvgiadeg nytcdvaspd
      121 gnfpktyhlt vlvpprlils cddhgnpvck aatgkpaaqi swvlesnstp keeghangtv
      181 tvlskftays tsminttciv fhptgnqsks vvcqlpknsf ilhvsiifci liiitflavi
      241 yyiklhsdrl chitkppets vthfpqddtm evepyttyvq keniiynsvs dltvgqnlpq
      301 glfqqye
//
LOCUS       XP_053912764             107 aa            linear   VRT 09-MAR-2023
DEFINITION  serine-rich and transmembrane domain-containing protein 1 [Cuculus
            canorus].
ACCESSION   XP_053912764
VERSION     XP_053912764.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056789.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..107
                     /product="serine-rich and transmembrane domain-containing
                     protein 1"
                     /calculated_mol_wt=11372
     Region          1..106
                     /region_name="SRTM1"
                     /note="Serine-rich and transmembrane domain-containing
                     protein 1; pfam15872"
                     /db_xref="CDD:318153"
     CDS             1..107
                     /gene="SERTM1"
                     /coded_by="XM_054056789.1:497..820"
                     /db_xref="GeneID:104066122"
ORIGIN      
        1 msepdpssgf vgnmengtfl elyptslsts vdsstgrlsn vyvyvsifls llafllllli
       61 ialqrlknii sssssypeyn sdagssftnl evcsissqrs alsnlss
//
LOCUS       XP_053912766             107 aa            linear   VRT 09-MAR-2023
DEFINITION  serine-rich and transmembrane domain-containing protein 1 [Cuculus
            canorus].
ACCESSION   XP_053912766
VERSION     XP_053912766.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056791.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..107
                     /product="serine-rich and transmembrane domain-containing
                     protein 1"
                     /calculated_mol_wt=11372
     Region          1..106
                     /region_name="SRTM1"
                     /note="Serine-rich and transmembrane domain-containing
                     protein 1; pfam15872"
                     /db_xref="CDD:318153"
     CDS             1..107
                     /gene="SERTM1"
                     /coded_by="XM_054056791.1:399..722"
                     /db_xref="GeneID:104066122"
ORIGIN      
        1 msepdpssgf vgnmengtfl elyptslsts vdsstgrlsn vyvyvsifls llafllllli
       61 ialqrlknii sssssypeyn sdagssftnl evcsissqrs alsnlss
//
LOCUS       XP_009558807             581 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: PCNA-interacting partner [Cuculus canorus].
ACCESSION   XP_009558807
VERSION     XP_009558807.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560512.2
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009558807.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..581
                     /product="LOW QUALITY PROTEIN: PCNA-interacting partner"
                     /calculated_mol_wt=65052
     Region          <172..>267
                     /region_name="UvrD"
                     /note="Superfamily I DNA or RNA helicase [Replication,
                     recombination and repair]; COG0210"
                     /db_xref="CDD:439980"
     CDS             1..581
                     /gene="PARPBP"
                     /coded_by="XM_009560512.2:567..2312"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /db_xref="GeneID:104058926"
ORIGIN      
        1 mvafqqkvln likrfrrqwp lfsdserttv cgadcmlmal qlsmaevnkq hhgdftvsls
       61 dvletwkyll hdklelsyen mtepenyadl kkaydaflar snmldlidiy rkcyslglvd
      121 eddhivpvql lefisgimnv eetsgsvlst ptrfnkqgqe tvkvailakk cvcsylsllv
      181 nskddlalah ilnvpdrglg reaftnlkha sqkrrmsifl iatsfirtve lggrgcessl
      241 fdplkvhvkg lsdfvhfidk lqeivgetld qriaggrils tvkmhlikgr sngdpfcqav
      301 eevvqdldlk ikniidsqqe tltasttgvs parpklhsin hgtsycgrdt vkvllvllde
      361 eavspptqnk aellhddesl nlfgitsvlt lfkspaqlnr sspqplrqrv qksvgektfk
      421 mkqssiksqf actyknelse ikgrlflssd qmptcihptp kqhlnaaclt egmnscldvp
      481 vlgtisenvh qtrsytemgk lscqprnkns kneqmdlnnd kvicdkesep slqknakrpk
      541 tsnnpqkeld skvsgkrkqs kttsknklip gqakltcffr l
//
LOCUS       XP_053912767             166 aa            linear   VRT 09-MAR-2023
DEFINITION  pro-MCH [Cuculus canorus].
ACCESSION   XP_053912767
VERSION     XP_053912767.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056792.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..166
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..166
                     /product="pro-MCH"
                     /calculated_mol_wt=18875
     Region          82..166
                     /region_name="Pro-MCH"
                     /note="Pro-melanin-concentrating hormone (Pro-MCH);
                     pfam05824"
                     /db_xref="CDD:461750"
     CDS             1..166
                     /gene="PMCH"
                     /coded_by="XM_054056792.1:3250..3750"
                     /db_xref="GeneID:104058925"
ORIGIN      
        1 mcissymlil slslfsqgfl lsvskslqnv edadmllttl nlgktlqngd rfvnrgaipl
       61 lkhfktedns vldeeddrnm kvldtgsrhd flnhvmpinf srnqlpylal kgamvfpada
      121 kiqniesiqe rettdeensa kfpigrrdfd mlrcmlgrvy rpcwqv
//
LOCUS       XP_053912768             341 aa            linear   VRT 09-MAR-2023
DEFINITION  tetraspanin-33 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912768
VERSION     XP_053912768.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056793.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..341
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..341
                     /product="tetraspanin-33 isoform X1"
                     /calculated_mol_wt=36905
     Region          23..319
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          179..294
                     /region_name="penumbra_like_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), penumbra_like family.
                     Tetraspanins are trans-membrane proteins with 4
                     trans-membrane segments. Both the N- and C-termini lie on
                     the intracellular side of the membrane. This alignment...;
                     cd03158"
                     /db_xref="CDD:239411"
     Site            order(180,184,186..187,190,204,207..208,211..212)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239411"
     CDS             1..341
                     /gene="TSPAN33"
                     /coded_by="XM_054056793.1:158..1183"
                     /db_xref="GeneID:104061378"
ORIGIN      
        1 marraagsag ahgddfsfvs pavkyvlfff ntlfwaismv mmavgvyarl lkhaeaamac
       61 lavdpavlli vvgiltflit fcgcvgslre nicllqvvsa rspalqdlgf samvppsslp
      121 spssysqfsg cltiifllql aagvlgfvfs dkvrmargqy gsqpvplsdv lsivpvvpka
      181 rgkvseiing aivhyrddld lqnlidfgqk efsccggvsy kdwsqnmyfn ctaanpsrer
      241 csvpfscclq dpdeavvntm cgqgmqarsy leasafiytn gcidtlvnwv hsnlfllggv
      301 alglavpqlv gillaqilvs qirdqirlql ytqqhradpw y
//
LOCUS       XP_053912769             328 aa            linear   VRT 09-MAR-2023
DEFINITION  tetraspanin-33 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912769
VERSION     XP_053912769.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056794.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..328
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..328
                     /product="tetraspanin-33 isoform X2"
                     /calculated_mol_wt=34812
     Region          23..>217
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          179..>254
                     /region_name="tetraspanin_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL). Tetraspanins are trans-membrane
                     proteins with 4 trans-membrane segments. Both the N- and
                     C-termini lie on the intracellular side of the membrane.
                     This alignment model spans the...; cl02781"
                     /db_xref="CDD:351888"
     Site            order(180,184,186..187,190,204,207..208,211..212)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239401"
     CDS             1..328
                     /gene="TSPAN33"
                     /coded_by="XM_054056794.1:158..1144"
                     /db_xref="GeneID:104061378"
ORIGIN      
        1 marraagsag ahgddfsfvs pavkyvlfff ntlfwaismv mmavgvyarl lkhaeaamac
       61 lavdpavlli vvgiltflit fcgcvgslre nicllqvvsa rspalqdlgf samvppsslp
      121 spssysqfsg cltiifllql aagvlgfvfs dkvrmargqy gsqpvplsdv lsivpvvpka
      181 rgkvseiing aivhyrddld lqnlidfgqk efsccggvsy kdwsqnmyfn ctaanpsrer
      241 csvpfscclq dpdeplcvha plpgcrqhhv ragnagselp gsqrlhlhqr lhrhtgqlgp
      301 qqplpagrcr agagcppagg dpagadpg
//
LOCUS       XP_053912770             314 aa            linear   VRT 09-MAR-2023
DEFINITION  tetraspanin-33 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912770
VERSION     XP_053912770.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056795.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..314
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..314
                     /product="tetraspanin-33 isoform X3"
                     /calculated_mol_wt=34030
     Region          23..292
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          147..267
                     /region_name="penumbra_like_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), penumbra_like family.
                     Tetraspanins are trans-membrane proteins with 4
                     trans-membrane segments. Both the N- and C-termini lie on
                     the intracellular side of the membrane. This alignment...;
                     cd03158"
                     /db_xref="CDD:239411"
     Site            order(148,153,157,159..160,163,177,180..181,184..185)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239411"
     CDS             1..314
                     /gene="TSPAN33"
                     /coded_by="XM_054056795.1:158..1102"
                     /db_xref="GeneID:104061378"
ORIGIN      
        1 marraagsag ahgddfsfvs pavkyvlfff ntlfwaismv mmavgvyarl lkhaeaamac
       61 lavdpavlli vvgiltflit fcgcvgslre nicllqvvsa rspalqdlgf samvppsslp
      121 spssysqfsg cltiifllql aagvlgfvfs dkargkvsei ingaivhyrd dldlqnlidf
      181 gqkefsccgg vsykdwsqnm yfnctaanps rercsvpfsc clqdpdeavv ntmcgqgmqa
      241 rsyleasafi ytngcidtlv nwvhsnlfll ggvalglavp qlvgillaqi lvsqirdqir
      301 lqlytqqhra dpwy
//
LOCUS       XP_053912771             311 aa            linear   VRT 09-MAR-2023
DEFINITION  tetraspanin-33 isoform X4 [Cuculus canorus].
ACCESSION   XP_053912771
VERSION     XP_053912771.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056796.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..311
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..311
                     /product="tetraspanin-33 isoform X4"
                     /calculated_mol_wt=33859
     Region          23..289
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          149..264
                     /region_name="penumbra_like_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), penumbra_like family.
                     Tetraspanins are trans-membrane proteins with 4
                     trans-membrane segments. Both the N- and C-termini lie on
                     the intracellular side of the membrane. This alignment...;
                     cd03158"
                     /db_xref="CDD:239411"
     Site            order(150,154,156..157,160,174,177..178,181..182)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239411"
     CDS             1..311
                     /gene="TSPAN33"
                     /coded_by="XM_054056796.1:158..1093"
                     /db_xref="GeneID:104061378"
ORIGIN      
        1 marraagsag ahgddfsfvs pavkyvlfff ntlfwaismv mmavgvyarl lkhaeaamac
       61 lavdpavlli vvgiltflit fcgcvgslre nicllqvfsg cltiifllql aagvlgfvfs
      121 dkvrmargqy gsqpvplsdv lsivpvvpka rgkvseiing aivhyrddld lqnlidfgqk
      181 efsccggvsy kdwsqnmyfn ctaanpsrer csvpfscclq dpdeavvntm cgqgmqarsy
      241 leasafiytn gcidtlvnwv hsnlfllggv alglavpqlv gillaqilvs qirdqirlql
      301 ytqqhradpw y
//
LOCUS       XP_053912772             299 aa            linear   VRT 09-MAR-2023
DEFINITION  tetraspanin-33 isoform X5 [Cuculus canorus].
ACCESSION   XP_053912772
VERSION     XP_053912772.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056797.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..299
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..299
                     /product="tetraspanin-33 isoform X5"
                     /calculated_mol_wt=32522
     Region          23..277
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          137..252
                     /region_name="penumbra_like_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), penumbra_like family.
                     Tetraspanins are trans-membrane proteins with 4
                     trans-membrane segments. Both the N- and C-termini lie on
                     the intracellular side of the membrane. This alignment...;
                     cd03158"
                     /db_xref="CDD:239411"
     Site            order(138,142,144..145,148,162,165..166,169..170)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239411"
     CDS             1..299
                     /gene="TSPAN33"
                     /coded_by="XM_054056797.1:158..1057"
                     /db_xref="GeneID:104061378"
ORIGIN      
        1 marraagsag ahgddfsfvs pavkyvlfff ntlfwaismv mmavgvyarl lkhaeaamac
       61 lavdpavlli vvgiltflit fcgcvgslre nicllqvlaa gvlgfvfsdk vrmargqygs
      121 qpvplsdvls ivpvvpkarg kvseiingai vhyrddldlq nlidfgqkef sccggvsykd
      181 wsqnmyfnct aanpsrercs vpfscclqdp deavvntmcg qgmqarsyle asafiytngc
      241 idtlvnwvhs nlfllggval glavpqlvgi llaqilvsqi rdqirlqlyt qqhradpwy
//
LOCUS       XP_053912773             298 aa            linear   VRT 09-MAR-2023
DEFINITION  tetraspanin-33 isoform X6 [Cuculus canorus].
ACCESSION   XP_053912773
VERSION     XP_053912773.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056798.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..298
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..298
                     /product="tetraspanin-33 isoform X6"
                     /calculated_mol_wt=32076
     Region          23..276
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          179..251
                     /region_name="tetraspanin_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL). Tetraspanins are trans-membrane
                     proteins with 4 trans-membrane segments. Both the N- and
                     C-termini lie on the intracellular side of the membrane.
                     This alignment model spans the...; cl02781"
                     /db_xref="CDD:351888"
     Site            order(180,184,186..187,190,204,207..208,211)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239401"
     CDS             1..298
                     /gene="TSPAN33"
                     /coded_by="XM_054056798.1:158..1054"
                     /db_xref="GeneID:104061378"
ORIGIN      
        1 marraagsag ahgddfsfvs pavkyvlfff ntlfwaismv mmavgvyarl lkhaeaamac
       61 lavdpavlli vvgiltflit fcgcvgslre nicllqvvsa rspalqdlgf samvppsslp
      121 spssysqfsg cltiifllql aagvlgfvfs dkvrmargqy gsqpvplsdv lsivpvvpka
      181 rgkvseiing aivhyrddld lqnlidfgqk eavvntmcgq gmqarsylea safiytngci
      241 dtlvnwvhsn lfllggvalg lavpqlvgil laqilvsqir dqirlqlytq qhradpwy
//
LOCUS       XP_053912774             284 aa            linear   VRT 09-MAR-2023
DEFINITION  tetraspanin-33 isoform X7 [Cuculus canorus].
ACCESSION   XP_053912774
VERSION     XP_053912774.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056799.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..284
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..284
                     /product="tetraspanin-33 isoform X7"
                     /calculated_mol_wt=30983
     Region          23..262
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          117..237
                     /region_name="penumbra_like_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), penumbra_like family.
                     Tetraspanins are trans-membrane proteins with 4
                     trans-membrane segments. Both the N- and C-termini lie on
                     the intracellular side of the membrane. This alignment...;
                     cd03158"
                     /db_xref="CDD:239411"
     Site            order(118,123,127,129..130,133,147,150..151,154..155)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239411"
     CDS             1..284
                     /gene="TSPAN33"
                     /coded_by="XM_054056799.1:158..1012"
                     /db_xref="GeneID:104061378"
ORIGIN      
        1 marraagsag ahgddfsfvs pavkyvlfff ntlfwaismv mmavgvyarl lkhaeaamac
       61 lavdpavlli vvgiltflit fcgcvgslre nicllqvfsg cltiifllql aagvlgfvfs
      121 dkargkvsei ingaivhyrd dldlqnlidf gqkefsccgg vsykdwsqnm yfnctaanps
      181 rercsvpfsc clqdpdeavv ntmcgqgmqa rsyleasafi ytngcidtlv nwvhsnlfll
      241 ggvalglavp qlvgillaqi lvsqirdqir lqlytqqhra dpwy
//
LOCUS       XP_053912775             272 aa            linear   VRT 09-MAR-2023
DEFINITION  tetraspanin-33 isoform X8 [Cuculus canorus].
ACCESSION   XP_053912775
VERSION     XP_053912775.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056800.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..272
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..272
                     /product="tetraspanin-33 isoform X8"
                     /calculated_mol_wt=29647
     Region          23..250
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          105..225
                     /region_name="penumbra_like_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), penumbra_like family.
                     Tetraspanins are trans-membrane proteins with 4
                     trans-membrane segments. Both the N- and C-termini lie on
                     the intracellular side of the membrane. This alignment...;
                     cd03158"
                     /db_xref="CDD:239411"
     Site            order(106,111,115,117..118,121,135,138..139,142..143)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239411"
     CDS             1..272
                     /gene="TSPAN33"
                     /coded_by="XM_054056800.1:158..976"
                     /db_xref="GeneID:104061378"
ORIGIN      
        1 marraagsag ahgddfsfvs pavkyvlfff ntlfwaismv mmavgvyarl lkhaeaamac
       61 lavdpavlli vvgiltflit fcgcvgslre nicllqvlaa gvlgfvfsdk argkvseiin
      121 gaivhyrddl dlqnlidfgq kefsccggvs ykdwsqnmyf nctaanpsre rcsvpfsccl
      181 qdpdeavvnt mcgqgmqars yleasafiyt ngcidtlvnw vhsnlfllgg valglavpql
      241 vgillaqilv sqirdqirlq lytqqhradp wy
//
LOCUS       XP_053912776             271 aa            linear   VRT 09-MAR-2023
DEFINITION  tetraspanin-33 isoform X9 [Cuculus canorus].
ACCESSION   XP_053912776
VERSION     XP_053912776.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056801.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..271
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..271
                     /product="tetraspanin-33 isoform X9"
                     /calculated_mol_wt=29200
     Region          23..249
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          147..224
                     /region_name="tetraspanin_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL). Tetraspanins are trans-membrane
                     proteins with 4 trans-membrane segments. Both the N- and
                     C-termini lie on the intracellular side of the membrane.
                     This alignment model spans the...; cl02781"
                     /db_xref="CDD:351888"
     Site            order(148,153,157,159..160,163,177,180..181,184)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239401"
     CDS             1..271
                     /gene="TSPAN33"
                     /coded_by="XM_054056801.1:158..973"
                     /db_xref="GeneID:104061378"
ORIGIN      
        1 marraagsag ahgddfsfvs pavkyvlfff ntlfwaismv mmavgvyarl lkhaeaamac
       61 lavdpavlli vvgiltflit fcgcvgslre nicllqvvsa rspalqdlgf samvppsslp
      121 spssysqfsg cltiifllql aagvlgfvfs dkargkvsei ingaivhyrd dldlqnlidf
      181 gqkeavvntm cgqgmqarsy leasafiytn gcidtlvnwv hsnlfllggv alglavpqlv
      241 gillaqilvs qirdqirlql ytqqhradpw y
//
LOCUS       XP_053912777             330 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 436 [Cuculus canorus].
ACCESSION   XP_053912777
VERSION     XP_053912777.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056802.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..330
                     /product="zinc finger protein 436"
                     /calculated_mol_wt=37420
     Region          80..>328
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          84..104
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(89,91,93,95..96,99..100,103,117,119,123..124,
                     127..128,131,145,147,149,151..152,155..156,159)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          112..132
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          140..160
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          168..187
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          196..216
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          224..244
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          252..272
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(257,259,261,263..264,267..268,271,285,287,291..292,
                     295..296,299,313,315,317,319..320,323..324,327)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          280..300
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          308..328
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..330
                     /gene="LOC104066633"
                     /coded_by="XM_054056802.1:43..1035"
                     /db_xref="GeneID:104066633"
ORIGIN      
        1 msdneghlqr dgpeaangpc gaisdffmre aaspagcgqe tsrlrtells qetgpgktsr
       61 cgfrkrketv vpqrafmgek pyiciecgqs fnrssdlirh qrihtgekpy mcadcgksfg
      121 rrshliqhqr ihtgerpyqc kdcgksfsqs thlvqhqrnh tgerpyvcak cgrnfyqnsg
      181 llrhanfhtg ekpykcpqcg krfsdssnli ahqrlhtgek pykcadcskc fsessklvih
      241 rrvhtgekpy lcpdcgksfs qrshlvqhrr thtgekpykc aecgtcfsdn stlirhrrth
      301 tgekpfkcsh cgksfsrnsy lvshqrvhvw
//
LOCUS       XP_053912779             225 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction beta-2 protein [Cuculus canorus].
ACCESSION   XP_053912779
VERSION     XP_053912779.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056804.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..225
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..225
                     /product="gap junction beta-2 protein"
                     /calculated_mol_wt=26288
     Region          2..211
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     CDS             1..225
                     /gene="GJB2"
                     /coded_by="XM_054056804.1:176..853"
                     /db_xref="GeneID:104055326"
ORIGIN      
        1 mdwgslqail ggvnkhstgi gkiwltvlfi frimilvvaa ervwgdeqqd fvcntlqpgc
       61 rnvcydhffp ishirlwalq lifvstpall vamhvayrrh ekkrrfrnge kidieelkne
      121 kmhirgplww tytssiffri ifeavfmyvf yymydgyqmp rlvkcnawpc pntvdcfvsr
      181 ptekttftif mlavsgicmm lnlaelcylv ikvcmkqsrk ttvlk
//
LOCUS       XP_053912780             225 aa            linear   VRT 09-MAR-2023
DEFINITION  gap junction beta-2 protein [Cuculus canorus].
ACCESSION   XP_053912780
VERSION     XP_053912780.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056805.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..225
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..225
                     /product="gap junction beta-2 protein"
                     /calculated_mol_wt=26288
     Region          2..211
                     /region_name="Connexin"
                     /note="pfam00029"
                     /db_xref="CDD:459638"
     CDS             1..225
                     /gene="GJB2"
                     /coded_by="XM_054056805.1:42..719"
                     /db_xref="GeneID:104055326"
ORIGIN      
        1 mdwgslqail ggvnkhstgi gkiwltvlfi frimilvvaa ervwgdeqqd fvcntlqpgc
       61 rnvcydhffp ishirlwalq lifvstpall vamhvayrrh ekkrrfrnge kidieelkne
      121 kmhirgplww tytssiffri ifeavfmyvf yymydgyqmp rlvkcnawpc pntvdcfvsr
      181 ptekttftif mlavsgicmm lnlaelcylv ikvcmkqsrk ttvlk
//
LOCUS       XP_009554561             660 aa            linear   VRT 09-MAR-2023
DEFINITION  histidine ammonia-lyase [Cuculus canorus].
ACCESSION   XP_009554561
VERSION     XP_009554561.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556266.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554561.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..660
                     /product="histidine ammonia-lyase"
                     /calculated_mol_wt=72966
     Region          15..78
                     /region_name="Par3_HAL_N_term"
                     /note="N-terminal of Par3 and HAL proteins; pfam12053"
                     /db_xref="CDD:463446"
     Region          114..624
                     /region_name="hutH"
                     /note="histidine ammonia-lyase; TIGR01225"
                     /db_xref="CDD:200086"
     Site            order(164..166,168,170,187,190,299..303,307,395,398,428,
                     440)
                     /site_type="active"
                     /note="active sites [active]"
                     /db_xref="CDD:176460"
     Site            order(169..170,189,192..199,220,248..249,262,265,351..352,
                     355..356,358,361,392,394..396,398..399,402..403,409..410,
                     413,416..417,420..421,424..425,430..432,437,439..445,
                     447..448,451,455,462,465,469,473,476,479,491..492,
                     494..495,497..500,502,504..509,511..514,525..531,534,
                     540..541,544,547..548)
                     /site_type="other"
                     /note="tetramer interface [polypeptide binding]"
                     /db_xref="CDD:176460"
     CDS             1..660
                     /gene="HAL"
                     /coded_by="XM_009556266.2:117..2099"
                     /db_xref="GeneID:104055172"
ORIGIN      
        1 mprytvhvrg ewlavpcltg tntvrwlgke avrrymknkp dnggfasvee vkfyirrckg
       61 lglldlddtv edalednefv evviegdims pdfipsqpeg vhlyskyrep dqyisldgns
      121 lttedlvnlg kglykikltp eaeakvkqsr evierivkeq tvvygittgf gkfartvipn
      181 sklrelqvnl vrshsagvgk plspersrml lalrinvlak gysgisletl qqvieafnas
      241 clpyipekgt vgasgdlapl shlalglige gkmwspksgw adakyvleah glrpitlrpk
      301 eglalingtq mitslgceav erasaiarqa diiaaltlev lkgttrafdt dihavrphrg
      361 qvevafrfrs lldsdhhpse iaeshrfcdr vqdaytmrcc pqvhgvvndt iafvkdimmt
      421 einsatdnpm vfaertetis ggnfhgeypa kaldylaigv helaaiserr ierlcnpsls
      481 elpaflvteg glnsgfmiah ctaaalvsen kalchpssvd slstsaated hvsmggwaar
      541 kalrviehve qvlaiellaa cqgieflrpl rtttplekvy dlvrsvvrpw mkdrfmapdi
      601 eaahrllveq kvwevakpyi ekyrrehipe srpisptafs lgllevntgv ghdhrhqdel
//
LOCUS       XP_053912781             180 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP-ribosylation factor 5 [Cuculus canorus].
ACCESSION   XP_053912781
VERSION     XP_053912781.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056806.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..180
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..180
                     /product="ADP-ribosylation factor 5"
                     /calculated_mol_wt=20381
     Region          1..180
                     /region_name="P-loop containing Nucleoside Triphosphate
                     Hydrolases"
                     /note="Members of the P-loop NTPase domain superfamily are
                     characterized by a conserved nucleotide phosphate-binding
                     motif, also referred to as the Walker A motif
                     (GxxxxGK[S/T], where x is any residue), and the Walker B
                     motif (hhhh[D/E], where h is a...; cl38936"
                     /db_xref="CDD:476819"
     Site            24..31
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206717"
     Site            order(26..32,126..127,129,159..161)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206717"
     Site            order(26..27,31,35,47..54,76,81)
                     /site_type="other"
                     /note="putative GAP interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206717"
     Site            36..51
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206717"
     Site            order(48..52,57,67,71,73,77,79..81)
                     /site_type="other"
                     /note="GEF interaction site [polypeptide binding]"
                     /db_xref="CDD:206717"
     Site            48
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206717"
     Site            order(49..51,73,80)
                     /site_type="active"
                     /note="effector interaction site [active]"
                     /db_xref="CDD:206717"
     Site            51..66
                     /site_type="active"
                     /note="interswitch region [active]"
                     /db_xref="CDD:206717"
     Site            67..70
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206717"
     Site            69..86
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206717"
     Site            126..129
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206717"
     Site            159..161
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206717"
     CDS             1..180
                     /gene="ARF5"
                     /coded_by="XM_054056806.1:105..647"
                     /db_xref="GeneID:104062240"
ORIGIN      
        1 mgltvsaifs rifgkkqmri lmvgldaagk ttilyklklg eivttiptig fnvetveykn
       61 icftvwdvgg qdkirplwrh yfqntqglif vvdsndrerv qesaeelqkm lqedelrdav
      121 llvfankqdm pnamavselt dklglqmlrs rtwyvqatca tqgtglydgl dwlshelskr
//
LOCUS       XP_009556078             343 aa            linear   VRT 09-MAR-2023
DEFINITION  leukocyte cell-derived chemotaxin 1 [Cuculus canorus].
ACCESSION   XP_009556078
VERSION     XP_009556078.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557783.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..343
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..343
                     /product="leukocyte cell-derived chemotaxin 1"
                     /calculated_mol_wt=38259
     Region          101..198
                     /region_name="BRICHOS"
                     /note="The BRICHOS domain is found in a variety of
                     proteins implicated in dementia, respiratory distress and
                     cancer; smart01039"
                     /db_xref="CDD:198107"
     CDS             1..343
                     /gene="CNMD"
                     /coded_by="XM_009557783.2:86..1117"
                     /db_xref="GeneID:104056523"
ORIGIN      
        1 maegcekvpi aragpedver clppaytava pgpgrllkag aavliagall llagaigafy
       61 fwkaterqvy nvhytmsing kvqdgsmeid agnnletfkt gsgseeavev hdfqigitgi
      121 rfaegekcyi kaqpkahvpk vdamtkasls seledeimpv rfdensliwv aadepikhns
      181 flspkilelc gdlpifwlrp typkgnqrke mkrnkrqses nfdtedleaa peevntrspi
      241 twltqelnhq snetrpmgqe tdqtlnpdnp ynqlegegmg fdpmldhlgv cciecrrsyt
      301 qcqriceplm gyypwpynyq gcrtacriim pcswwvarim gvv
//
LOCUS       XP_009559192             746 aa            linear   VRT 09-MAR-2023
DEFINITION  EF-hand domain-containing family member C2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009559192
VERSION     XP_009559192.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560897.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009559192.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..746
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..746
                     /product="EF-hand domain-containing family member C2
                     isoform X1"
                     /calculated_mol_wt=86681
     Region          75..178
                     /region_name="DM10"
                     /note="Domains in hypothetical proteins in Drosophila, C.
                     elegans and mammals. Occurs singly in some nucleoside
                     diphosphate kinases; smart00676"
                     /db_xref="CDD:128921"
     Region          219..359
                     /region_name="DM10_dom"
                     /note="DM10 domain; pfam06565"
                     /db_xref="CDD:461948"
     Region          430..528
                     /region_name="DM10_dom"
                     /note="DM10 domain; pfam06565"
                     /db_xref="CDD:461948"
     CDS             1..746
                     /gene="EFHC2"
                     /coded_by="XM_009560897.2:62..2302"
                     /db_xref="GeneID:104059250"
ORIGIN      
        1 melpllpgfs rnrnigkekf hksqhwgycn nvamlvgedk pgiggeplpg qkpklkysaf
       61 pegigsdapa wvafdkqvls fdayfeeevp dknqepyrir hckiyfyled dtirvvepqv
      121 knsgitqgti irrcriplpp phedqfytid hfninievif yarrykiidc dqftknfllk
      181 mgvrlnppaa rpddpytter kknldsknpl rpyeridtlk qfleydghvl rffcvwddpe
      241 skfhdprklv lryyladdti dikeiipvns grdaalrflr rdklpkyapt glyqpgtits
      301 rtilnvfgkl vgnkgryild nrktgavhqe fyrdsdlkig avinvwgrkv ilcdcdeftk
      361 qyyrtkygim dftpvshkap pspklekvfp pyngfgseed slcscmglll kppkkdfkkf
      421 mekdrsvter nilhfiakli tdspidkdrk flisyflsdd tisifeykqr ntgilggkfl
      481 rrgrikkpgq elfksepsey fkaqdlfvga kvcfhghnfl lvdadeytfn ymerhanefp
      541 vadigviikk lkdvtkprsq eirqafaaad pghtetikyd sfrdlivsit detfleheiv
      601 tlgryysvrd ecevdihfll avaqeklkkn rfenfeqlss vfiyndrekc gvlprekcrt
      661 icksfrlpla dddlqalltm feddrkqvey kkfvdglnwr knqipafqai kvpfkneddw
      721 srqppsipvk gveylslldv lfgkee
//
LOCUS       XP_053912783             649 aa            linear   VRT 09-MAR-2023
DEFINITION  EF-hand domain-containing family member C2 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912783
VERSION     XP_053912783.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056808.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..649
                     /product="EF-hand domain-containing family member C2
                     isoform X2"
                     /calculated_mol_wt=75312
     Region          75..178
                     /region_name="DM10"
                     /note="Domains in hypothetical proteins in Drosophila, C.
                     elegans and mammals. Occurs singly in some nucleoside
                     diphosphate kinases; smart00676"
                     /db_xref="CDD:128921"
     Region          219..359
                     /region_name="DM10_dom"
                     /note="DM10 domain; pfam06565"
                     /db_xref="CDD:461948"
     Region          430..528
                     /region_name="DM10_dom"
                     /note="DM10 domain; pfam06565"
                     /db_xref="CDD:461948"
     CDS             1..649
                     /gene="EFHC2"
                     /coded_by="XM_054056808.1:62..2011"
                     /db_xref="GeneID:104059250"
ORIGIN      
        1 melpllpgfs rnrnigkekf hksqhwgycn nvamlvgedk pgiggeplpg qkpklkysaf
       61 pegigsdapa wvafdkqvls fdayfeeevp dknqepyrir hckiyfyled dtirvvepqv
      121 knsgitqgti irrcriplpp phedqfytid hfninievif yarrykiidc dqftknfllk
      181 mgvrlnppaa rpddpytter kknldsknpl rpyeridtlk qfleydghvl rffcvwddpe
      241 skfhdprklv lryyladdti dikeiipvns grdaalrflr rdklpkyapt glyqpgtits
      301 rtilnvfgkl vgnkgryild nrktgavhqe fyrdsdlkig avinvwgrkv ilcdcdeftk
      361 qyyrtkygim dftpvshkap pspklekvfp pyngfgseed slcscmglll kppkkdfkkf
      421 mekdrsvter nilhfiakli tdspidkdrk flisyflsdd tisifeykqr ntgilggkfl
      481 rrgrikkpgq elfksepsey fkaqdlfvga kvcfhghnfl lvdadeytfn ymerhanefp
      541 vadigviikk lkdvtkprsq eirqafaaad pghtetikyd sfrfeddrkq veykkfvdgl
      601 nwrknqipaf qaikvpfkne ddwsrqppsi pvkgveylsl ldvlfgkee
//
LOCUS       XP_053912784             300 aa            linear   VRT 09-MAR-2023
DEFINITION  coiled-coil domain-containing protein 107 [Cuculus canorus].
ACCESSION   XP_053912784
VERSION     XP_053912784.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056809.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..300
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..300
                     /product="coiled-coil domain-containing protein 107"
                     /calculated_mol_wt=34006
     Region          18..164
                     /region_name="RIC3"
                     /note="Resistance to inhibitors of cholinesterase homolog
                     3; pfam15361"
                     /db_xref="CDD:464671"
     CDS             1..300
                     /gene="CCDC107"
                     /coded_by="XM_054056809.1:48..950"
                     /db_xref="GeneID:104061141"
ORIGIN      
        1 malsaaqqla vsvvlvlcvf vavprllggg grptrggqag pgrfgprqqr rgnppalhqd
       61 hlnpgnsesn syqsvqqmrn amekeiksek trgsgrelaf tlmplyalgv gvfaaykflk
      121 mksheenlsq kekctedkak etehqllele qhlaqtekml nslltqldpl sncvnalace
      181 qkdeimtqlq sirrlmkesg ldksenkmkd vshicnekle dliqsfsehs qekemddred
      241 dssedlhenv dngykieehe fydeceihqf epdvvedqem inkdaiesee tglrrrnrye
//
LOCUS       XP_009556240             350 aa            linear   VRT 09-MAR-2023
DEFINITION  coagulation factor X [Cuculus canorus].
ACCESSION   XP_009556240
VERSION     XP_009556240.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557945.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556240.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..350
                     /product="coagulation factor X"
                     /calculated_mol_wt=38966
     Region          32..67
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          123..345
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cd00190"
                     /db_xref="CDD:238113"
     Site            order(156,202,299)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(293,318,320)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..350
                     /gene="LOC104056666"
                     /coded_by="XM_009557945.2:81..1133"
                     /db_xref="GeneID:104056666"
ORIGIN      
        1 maieghhktm wllpivllfl qmmvqtvvpe tcevnngnce qfckaedegv icscaagyal
       61 gsdnktcisv vkfpcgklqr nhearretvt ettaspdahp eneetteals shpevneeas
      121 slpssapwqa vlvheyhgwf cggtilneyf ilsaahcidr ykdlrvivgm vdkrkeepsr
      181 aihrvekiia harydnrtyd sdiallklee pitfsedvip aclpeedfan yvlmnqtfgi
      241 vsgfgrvfey arpvqrmkvl qvpyvdrntc kralygpvtr nmfcagygkd gkdacqgdgg
      301 gphvteyngt yfvtgiiswg egcgrqgkyg vytklskflp wvrsvlaens
//
LOCUS       XP_053912785             206 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912785
VERSION     XP_053912785.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056810.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..206
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..206
                     /product="DNA-directed RNA polymerase III subunit RPC8
                     isoform X1"
                     /calculated_mol_wt=23184
     Region          2..81
                     /region_name="RNAP_III_Rpc25_N"
                     /note="Rpc25, N-terminal ribonucleoprotein (RNP) domain.
                     Rpc25 is a subunit of eukaryotic RNA polymerase (RNAP) III
                     and is homologous to Rpa43 of eukaryotic RNAP I, Rpb7 of
                     eukaryotic RNAP II, and RpoE of archaeal RNAP. Rpc25 has
                     two domains, an N-terminal RNP...; cd04330"
                     /db_xref="CDD:239822"
     Site            order(2..6,8,28,31..32,46..49,73,78,80)
                     /site_type="other"
                     /note="Rpc17 interaction site [polypeptide binding]"
                     /db_xref="CDD:239822"
     Region          83..203
                     /region_name="RNA_pol_Rbc25"
                     /note="RNA polymerase III subunit Rpc25; pfam08292"
                     /db_xref="CDD:400543"
     CDS             1..206
                     /gene="POLR3H"
                     /coded_by="XM_054056810.1:136..756"
                     /db_xref="GeneID:104055493"
ORIGIN      
        1 mfvlvemtdt vrippwqfer klnesiaeel nkklankvvy nvglciclyd itkledsyif
       61 pgdgashtkv hfryvvfhpf ldeiligqik scsqdgvhvs igffddivip peslqqpakf
      121 deaeqvwvwe yeteegahdl ymdigeeirf rvvdetfvdt sptgpssaea stsnateevq
      181 kkeapytlvg sisepglgll swwtns
//
LOCUS       XP_053912786             206 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA-directed RNA polymerase III subunit RPC8 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912786
VERSION     XP_053912786.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056811.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..206
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..206
                     /product="DNA-directed RNA polymerase III subunit RPC8
                     isoform X1"
                     /calculated_mol_wt=23184
     Region          2..81
                     /region_name="RNAP_III_Rpc25_N"
                     /note="Rpc25, N-terminal ribonucleoprotein (RNP) domain.
                     Rpc25 is a subunit of eukaryotic RNA polymerase (RNAP) III
                     and is homologous to Rpa43 of eukaryotic RNAP I, Rpb7 of
                     eukaryotic RNAP II, and RpoE of archaeal RNAP. Rpc25 has
                     two domains, an N-terminal RNP...; cd04330"
                     /db_xref="CDD:239822"
     Site            order(2..6,8,28,31..32,46..49,73,78,80)
                     /site_type="other"
                     /note="Rpc17 interaction site [polypeptide binding]"
                     /db_xref="CDD:239822"
     Region          83..203
                     /region_name="RNA_pol_Rbc25"
                     /note="RNA polymerase III subunit Rpc25; pfam08292"
                     /db_xref="CDD:400543"
     CDS             1..206
                     /gene="POLR3H"
                     /coded_by="XM_054056811.1:78..698"
                     /db_xref="GeneID:104055493"
ORIGIN      
        1 mfvlvemtdt vrippwqfer klnesiaeel nkklankvvy nvglciclyd itkledsyif
       61 pgdgashtkv hfryvvfhpf ldeiligqik scsqdgvhvs igffddivip peslqqpakf
      121 deaeqvwvwe yeteegahdl ymdigeeirf rvvdetfvdt sptgpssaea stsnateevq
      181 kkeapytlvg sisepglgll swwtns
//
LOCUS       XP_053912787             200 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912787
VERSION     XP_053912787.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056812.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..200
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..200
                     /product="DNA-directed RNA polymerase III subunit RPC8
                     isoform X2"
                     /calculated_mol_wt=22465
     Region          1..75
                     /region_name="RNAP_III_Rpc25_N"
                     /note="Rpc25, N-terminal ribonucleoprotein (RNP) domain.
                     Rpc25 is a subunit of eukaryotic RNA polymerase (RNAP) III
                     and is homologous to Rpa43 of eukaryotic RNAP I, Rpb7 of
                     eukaryotic RNAP II, and RpoE of archaeal RNAP. Rpc25 has
                     two domains, an N-terminal RNP...; cd04330"
                     /db_xref="CDD:239822"
     Region          77..197
                     /region_name="RNA_pol_Rbc25"
                     /note="RNA polymerase III subunit Rpc25; pfam08292"
                     /db_xref="CDD:400543"
     CDS             1..200
                     /gene="POLR3H"
                     /coded_by="XM_054056812.1:126..728"
                     /db_xref="GeneID:104055493"
ORIGIN      
        1 mtdtvrippw qferklnesi aeelnkklan kvvynvglci clyditkled syifpgdgas
       61 htkvhfryvv fhpfldeili gqikscsqdg vhvsigffdd ivippeslqq pakfdeaeqv
      121 wvweyeteeg ahdlymdige eirfrvvdet fvdtsptgps saeastsnat eevqkkeapy
      181 tlvgsisepg lgllswwtns
//
LOCUS       XP_053912789            1155 aa            linear   VRT 09-MAR-2023
DEFINITION  ferroxidase HEPHL1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912789
VERSION     XP_053912789.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056814.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1155
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1155
                     /product="ferroxidase HEPHL1 isoform X1"
                     /calculated_mol_wt=129720
     Region          27..209
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          226..363
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          378..573
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          576..719
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          733..909
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          924..1065
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     CDS             1..1155
                     /gene="HEPHL1"
                     /coded_by="XM_054056814.1:73..3540"
                     /db_xref="GeneID:104064088"
ORIGIN      
        1 mpptrcggcl calgflwlfa vvetktrtyy lgiveenwdy apsgknlitg qslledkfas
       61 iyatrganri grvykkaifr qftddtysqe ipkaawlgfl gpvlkaeeed vfiihlknfa
      121 srpysvhphg vfydkdsega lypdgtggks keddfvvpgg nytytwpvrk dysptsadsn
      181 cltwiyhshi dtprdiasgl igplivckkg tadetsiegt gaanafalmf sivdenfswy
      241 ldenintfcl epatvdkede gfqtsnrmha ingyiygnlp glemcadtsm swhlfgmgse
      301 idihaayfyg htftnrdqra dvvglfpatf itaemtpgnp grwlitcqvn ehlrggmeal
      361 ydvqickknl srplpfsqkr ryyiaaeevl wnygpdgydk ftgqglnatg sesaiyftqg
      421 tdriggqywk ihyveytdat fskkkirsed mkhlgilgpv ikaevgdtvl vtfankakrs
      481 ysimahgvsf sklsegapys dgylkpgahv kpgetftykw rvpenggpte sdapcltyly
      541 ysatdavkdt nsglvgpllv crkntlnhdg tqkgidrefy llfsifdend swylnkniea
      601 ftgdpskvde ndagfkesnk mhavngylfg nlpglsmckd dkvswhligl gshydmhgvq
      661 fqgntidlrg ttrdglalfp hlsgtalmqp drvgtfkvvc rtfdhfvggm khlyevsscr
      721 nttraqqqrg amrlyyvaae evewdyasnk ssapkiynis sneesyghvf lthtedligs
      781 kykkvvyrey tnsnftqrkv rteeeehlei lgpllhaevg dsvlvvfknk asrpysisah
      841 gieevgceeq petpitlpge intyrwnvpe rsgpgktdpd citwvyystv nfvkdtysgl
      901 igplvvcrkg ildergqrkd idreftllfm vfdeneswyl kenietylht npddfnstkd
      961 fvegnskhai ngkiynsllg ltmnegdrtn wyligmgnev dihtvhfhaq tfifktdkdh
     1021 rgdvydlfpg tfqtveliae npgtwllhch vadhihagme ttytinksgq ltteaydktt
     1081 aknkptandy greegnffgk tlspgeasli laafffiglv llstalilfw litrqrsriq
     1141 ytalhdksal lsdsl
//
LOCUS       XP_053912790             963 aa            linear   VRT 09-MAR-2023
DEFINITION  ferroxidase HEPHL1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912790
VERSION     XP_053912790.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056815.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..963
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..963
                     /product="ferroxidase HEPHL1 isoform X2"
                     /calculated_mol_wt=108798
     Region          40..171
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          186..381
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          384..527
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          541..717
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          732..873
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     CDS             1..963
                     /gene="HEPHL1"
                     /coded_by="XM_054056815.1:137..3028"
                     /db_xref="GeneID:104064088"
ORIGIN      
        1 mgfsmtrtpk ehftlmelvv kakrttlwfp veiirthghi vdenfswyld enintfclep
       61 atvdkedegf qtsnrmhain gyiygnlpgl emcadtsmsw hlfgmgseid ihaayfyght
      121 ftnrdqradv vglfpatfit aemtpgnpgr wlitcqvneh lrggmealyd vqickknlsr
      181 plpfsqkrry yiaaeevlwn ygpdgydkft gqglnatgse saiyftqgtd riggqywkih
      241 yveytdatfs kkkirsedmk hlgilgpvik aevgdtvlvt fankakrsys imahgvsfsk
      301 lsegapysdg ylkpgahvkp getftykwrv penggptesd apcltylyys atdavkdtns
      361 glvgpllvcr kntlnhdgtq kgidrefyll fsifdendsw ylnknieaft gdpskvdend
      421 agfkesnkmh avngylfgnl pglsmckddk vswhliglgs hydmhgvqfq gntidlrgtt
      481 rdglalfphl sgtalmqpdr vgtfkvvcrt fdhfvggmkh lyevsscrnt traqqqrgam
      541 rlyyvaaeev ewdyasnkss apkiynissn eesyghvflt htedligsky kkvvyreytn
      601 snftqrkvrt eeeehleilg pllhaevgds vlvvfknkas rpysisahgi eevgceeqpe
      661 tpitlpgein tyrwnvpers gpgktdpdci twvyystvnf vkdtysglig plvvcrkgil
      721 dergqrkdid reftllfmvf deneswylke nietylhtnp ddfnstkdfv egnskhaing
      781 kiynsllglt mnegdrtnwy ligmgnevdi htvhfhaqtf ifktdkdhrg dvydlfpgtf
      841 qtveliaenp gtwllhchva dhihagmett ytinksgqlt teaydkttak nkptandygr
      901 eegnffgktl spgeaslila afffiglvll stalilfwli trqrsriqyt alhdksalls
      961 dsl
//
LOCUS       XP_053912791             948 aa            linear   VRT 09-MAR-2023
DEFINITION  ferroxidase HEPHL1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912791
VERSION     XP_053912791.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056816.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..948
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..948
                     /product="ferroxidase HEPHL1 isoform X3"
                     /calculated_mol_wt=106633
     Region          19..156
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          171..366
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          369..512
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          526..702
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          717..858
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     CDS             1..948
                     /gene="HEPHL1"
                     /coded_by="XM_054056816.1:80..2926"
                     /db_xref="GeneID:104064088"
ORIGIN      
        1 martadetsi egtgaanafa lmfsivdenf swyldenint fclepatvdk edegfqtsnr
       61 mhaingyiyg nlpglemcad tsmswhlfgm gseidihaay fyghtftnrd qradvvglfp
      121 atfitaemtp gnpgrwlitc qvnehlrggm ealydvqick knlsrplpfs qkrryyiaae
      181 evlwnygpdg ydkftgqgln atgsesaiyf tqgtdriggq ywkihyveyt datfskkkir
      241 sedmkhlgil gpvikaevgd tvlvtfanka krsysimahg vsfsklsega pysdgylkpg
      301 ahvkpgetft ykwrvpengg ptesdapclt ylyysatdav kdtnsglvgp llvcrkntln
      361 hdgtqkgidr efyllfsifd endswylnkn ieaftgdpsk vdendagfke snkmhavngy
      421 lfgnlpglsm ckddkvswhl iglgshydmh gvqfqgntid lrgttrdgla lfphlsgtal
      481 mqpdrvgtfk vvcrtfdhfv ggmkhlyevs scrnttraqq qrgamrlyyv aaeevewdya
      541 snkssapkiy nissneesyg hvflthtedl igskykkvvy reytnsnftq rkvrteeeeh
      601 leilgpllha evgdsvlvvf knkasrpysi sahgieevgc eeqpetpitl pgeintyrwn
      661 vpersgpgkt dpdcitwvyy stvnfvkdty sgligplvvc rkgildergq rkdidreftl
      721 lfmvfdenes wylkeniety lhtnpddfns tkdfvegnsk haingkiyns llgltmnegd
      781 rtnwyligmg nevdihtvhf haqtfifktd kdhrgdvydl fpgtfqtvel iaenpgtwll
      841 hchvadhiha gmettytink sgqltteayd kttaknkpta ndygreegnf fgktlspgea
      901 slilaafffi glvllstali lfwlitrqrs riqytalhdk sallsdsl
//
LOCUS       XP_053912792             927 aa            linear   VRT 09-MAR-2023
DEFINITION  ferroxidase HEPHL1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053912792
VERSION     XP_053912792.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056817.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..927
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..927
                     /product="ferroxidase HEPHL1 isoform X4"
                     /calculated_mol_wt=104554
     Region          1..135
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          150..345
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          348..491
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          505..681
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          696..837
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     CDS             1..927
                     /gene="HEPHL1"
                     /coded_by="XM_054056817.1:143..2926"
                     /db_xref="GeneID:104064088"
ORIGIN      
        1 mfsivdenfs wyldenintf clepatvdke degfqtsnrm haingyiygn lpglemcadt
       61 smswhlfgmg seidihaayf yghtftnrdq radvvglfpa tfitaemtpg npgrwlitcq
      121 vnehlrggme alydvqickk nlsrplpfsq krryyiaaee vlwnygpdgy dkftgqglna
      181 tgsesaiyft qgtdriggqy wkihyveytd atfskkkirs edmkhlgilg pvikaevgdt
      241 vlvtfankak rsysimahgv sfsklsegap ysdgylkpga hvkpgetfty kwrvpenggp
      301 tesdapclty lyysatdavk dtnsglvgpl lvcrkntlnh dgtqkgidre fyllfsifde
      361 ndswylnkni eaftgdpskv dendagfkes nkmhavngyl fgnlpglsmc kddkvswhli
      421 glgshydmhg vqfqgntidl rgttrdglal fphlsgtalm qpdrvgtfkv vcrtfdhfvg
      481 gmkhlyevss crnttraqqq rgamrlyyva aeevewdyas nkssapkiyn issneesygh
      541 vflthtedli gskykkvvyr eytnsnftqr kvrteeeehl eilgpllhae vgdsvlvvfk
      601 nkasrpysis ahgieevgce eqpetpitlp geintyrwnv persgpgktd pdcitwvyys
      661 tvnfvkdtys gligplvvcr kgildergqr kdidreftll fmvfdenesw ylkenietyl
      721 htnpddfnst kdfvegnskh aingkiynsl lgltmnegdr tnwyligmgn evdihtvhfh
      781 aqtfifktdk dhrgdvydlf pgtfqtveli aenpgtwllh chvadhihag mettytinks
      841 gqltteaydk ttaknkptan dygreegnff gktlspgeas lilaafffig lvllstalil
      901 fwlitrqrsr iqytalhdks allsdsl
//
LOCUS       XP_053912793             164 aa            linear   VRT 09-MAR-2023
DEFINITION  mid1-interacting protein 1 [Cuculus canorus].
ACCESSION   XP_053912793
VERSION     XP_053912793.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056818.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..164
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..164
                     /product="mid1-interacting protein 1"
                     /calculated_mol_wt=18199
     Region          3..160
                     /region_name="Spot_14"
                     /note="Thyroid hormone-inducible hepatic protein Spot 14;
                     pfam07084"
                     /db_xref="CDD:462085"
     CDS             1..164
                     /gene="MID1IP1"
                     /coded_by="XM_054056818.1:264..758"
                     /db_xref="GeneID:104057447"
ORIGIN      
        1 mmqicdsysq kyslfnamnr figavnnmdq tvmvpsllrd vpllleelda agavcpqrds
       61 alppadpgay fsrrdmyshy mllksirndi ewgvvqpaag eeaarkkdkl gggaaeegeg
      121 eedlekqfhy hlsglhsvls kltrkanvlt nrykqeigfs swgq
//
LOCUS       XP_053912794             164 aa            linear   VRT 09-MAR-2023
DEFINITION  mid1-interacting protein 1 [Cuculus canorus].
ACCESSION   XP_053912794
VERSION     XP_053912794.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056819.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..164
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..164
                     /product="mid1-interacting protein 1"
                     /calculated_mol_wt=18199
     Region          3..160
                     /region_name="Spot_14"
                     /note="Thyroid hormone-inducible hepatic protein Spot 14;
                     pfam07084"
                     /db_xref="CDD:462085"
     CDS             1..164
                     /gene="MID1IP1"
                     /coded_by="XM_054056819.1:223..717"
                     /db_xref="GeneID:104057447"
ORIGIN      
        1 mmqicdsysq kyslfnamnr figavnnmdq tvmvpsllrd vpllleelda agavcpqrds
       61 alppadpgay fsrrdmyshy mllksirndi ewgvvqpaag eeaarkkdkl gggaaeegeg
      121 eedlekqfhy hlsglhsvls kltrkanvlt nrykqeigfs swgq
//
LOCUS       XP_053912795             164 aa            linear   VRT 09-MAR-2023
DEFINITION  mid1-interacting protein 1 [Cuculus canorus].
ACCESSION   XP_053912795
VERSION     XP_053912795.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056820.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..164
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..164
                     /product="mid1-interacting protein 1"
                     /calculated_mol_wt=18199
     Region          3..160
                     /region_name="Spot_14"
                     /note="Thyroid hormone-inducible hepatic protein Spot 14;
                     pfam07084"
                     /db_xref="CDD:462085"
     CDS             1..164
                     /gene="MID1IP1"
                     /coded_by="XM_054056820.1:245..739"
                     /db_xref="GeneID:104057447"
ORIGIN      
        1 mmqicdsysq kyslfnamnr figavnnmdq tvmvpsllrd vpllleelda agavcpqrds
       61 alppadpgay fsrrdmyshy mllksirndi ewgvvqpaag eeaarkkdkl gggaaeegeg
      121 eedlekqfhy hlsglhsvls kltrkanvlt nrykqeigfs swgq
//
LOCUS       XP_053912796             164 aa            linear   VRT 09-MAR-2023
DEFINITION  mid1-interacting protein 1 [Cuculus canorus].
ACCESSION   XP_053912796
VERSION     XP_053912796.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056821.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..164
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..164
                     /product="mid1-interacting protein 1"
                     /calculated_mol_wt=18199
     Region          3..160
                     /region_name="Spot_14"
                     /note="Thyroid hormone-inducible hepatic protein Spot 14;
                     pfam07084"
                     /db_xref="CDD:462085"
     CDS             1..164
                     /gene="MID1IP1"
                     /coded_by="XM_054056821.1:180..674"
                     /db_xref="GeneID:104057447"
ORIGIN      
        1 mmqicdsysq kyslfnamnr figavnnmdq tvmvpsllrd vpllleelda agavcpqrds
       61 alppadpgay fsrrdmyshy mllksirndi ewgvvqpaag eeaarkkdkl gggaaeegeg
      121 eedlekqfhy hlsglhsvls kltrkanvlt nrykqeigfs swgq
//
LOCUS       XP_009556192             311 aa            linear   VRT 09-MAR-2023
DEFINITION  sulfotransferase 1C4 isoform X1 [Cuculus canorus].
ACCESSION   XP_009556192
VERSION     XP_009556192.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557897.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009556192.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..311
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..311
                     /product="sulfotransferase 1C4 isoform X1"
                     /calculated_mol_wt=36630
     Region          50..303
                     /region_name="Sulfotransfer_1"
                     /note="Sulfotransferase domain; pfam00685"
                     /db_xref="CDD:425820"
     CDS             1..311
                     /gene="SULT1C4"
                     /coded_by="XM_009557897.2:4..939"
                     /db_xref="GeneID:104056629"
ORIGIN      
        1 macsmaldrm edlnlkqtva rgelrevegi pitepmcktw dqvkkfkarp ddlliatyak
       61 agttwtqeiv dmiqqngdve kcrrastyrr hpflewfiqe sptdhysgve laeampsprt
      121 mkthlpvqlv ppsfweqnck viymarnakd nlvsyyhfhr makacpepgt weefiekfmt
      181 gkvlwgswyd hvkgwwkakd khrilylfye dmkenpkrei qkilkflekd msqellnkiv
      241 hstsfeimke npmanyttef rgimdhsvsp fmrkgavgdw knhftvaqne kfdedykkkm
      301 adtslvfrme l
//
LOCUS       XP_053912798             302 aa            linear   VRT 09-MAR-2023
DEFINITION  sulfotransferase 1C4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912798
VERSION     XP_053912798.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056823.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..302
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..302
                     /product="sulfotransferase 1C4 isoform X2"
                     /calculated_mol_wt=35651
     Region          41..294
                     /region_name="Sulfotransfer_1"
                     /note="Sulfotransferase domain; pfam00685"
                     /db_xref="CDD:425820"
     CDS             1..302
                     /gene="SULT1C4"
                     /coded_by="XM_054056823.1:159..1067"
                     /db_xref="GeneID:104056629"
ORIGIN      
        1 medlnlkqtv argelreveg ipitepmckt wdqvkkfkar pddlliatya kagttwtqei
       61 vdmiqqngdv ekcrrastyr rhpflewfiq esptdhysgv elaeampspr tmkthlpvql
      121 vppsfweqnc kviymarnak dnlvsyyhfh rmakacpepg tweefiekfm tgkvlwgswy
      181 dhvkgwwkak dkhrilylfy edmkenpkre iqkilkflek dmsqellnki vhstsfeimk
      241 enpmanytte frgimdhsvs pfmrkgavgd wknhftvaqn ekfdedykkk madtslvfrm
      301 el
//
LOCUS       XP_009555121             355 aa            linear   VRT 09-MAR-2023
DEFINITION  2-Hydroxyacid oxidase 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_009555121
VERSION     XP_009555121.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556826.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..355
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..355
                     /product="2-Hydroxyacid oxidase 2 isoform X1"
                     /calculated_mol_wt=39106
     Region          13..351
                     /region_name="FMN_dh"
                     /note="FMN-dependent dehydrogenase; pfam01070"
                     /db_xref="CDD:426029"
     Site            order(24,106,130,158,165,226,250,253,305)
                     /site_type="active"
                     /db_xref="CDD:239203"
     Site            order(24,130,165,250,253)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:239203"
     Site            order(106,130,158,226,250,253,305)
                     /site_type="other"
                     /note="FMN binding site [chemical binding]"
                     /db_xref="CDD:239203"
     Site            order(130,165,250)
                     /site_type="active"
                     /note="putative catalytic residues [active]"
                     /db_xref="CDD:239203"
     CDS             1..355
                     /gene="HAO2"
                     /coded_by="XM_009556826.2:172..1239"
                     /db_xref="GeneID:104055666"
ORIGIN      
        1 mamvclsdfe ayakkylpki awdffaagad dcitrdenil aykrihlrpr mlrdvsmmdi
       61 rtklqgteis fpvgiaptgf hqlawpdgek staraakamn icyiastyst ctleeisaaa
      121 pgglrwfqly ihrnravsqq liqqaealgf qglvltvdlp ytgkrrddir ngfrlpphmk
      181 lknlegafeg ddcseyglpp nsldpsvtwn diywlqslth lpiiikgilt kedaelavrh
      241 gvqgiivsnh ggrqldggsa tidalvevve avqdkvevyl dggirkgsdi lkalalgakc
      301 vfigrpalwg laykgeeglq dvlrilqdef rlsmalagca nvsdigrhlv qfskl
//
LOCUS       XP_053912799             355 aa            linear   VRT 09-MAR-2023
DEFINITION  2-Hydroxyacid oxidase 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912799
VERSION     XP_053912799.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056824.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..355
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..355
                     /product="2-Hydroxyacid oxidase 2 isoform X1"
                     /calculated_mol_wt=39106
     Region          13..351
                     /region_name="FMN_dh"
                     /note="FMN-dependent dehydrogenase; pfam01070"
                     /db_xref="CDD:426029"
     Site            order(24,106,130,158,165,226,250,253,305)
                     /site_type="active"
                     /db_xref="CDD:239203"
     Site            order(24,130,165,250,253)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:239203"
     Site            order(106,130,158,226,250,253,305)
                     /site_type="other"
                     /note="FMN binding site [chemical binding]"
                     /db_xref="CDD:239203"
     Site            order(130,165,250)
                     /site_type="active"
                     /note="putative catalytic residues [active]"
                     /db_xref="CDD:239203"
     CDS             1..355
                     /gene="HAO2"
                     /coded_by="XM_054056824.1:134..1201"
                     /db_xref="GeneID:104055666"
ORIGIN      
        1 mamvclsdfe ayakkylpki awdffaagad dcitrdenil aykrihlrpr mlrdvsmmdi
       61 rtklqgteis fpvgiaptgf hqlawpdgek staraakamn icyiastyst ctleeisaaa
      121 pgglrwfqly ihrnravsqq liqqaealgf qglvltvdlp ytgkrrddir ngfrlpphmk
      181 lknlegafeg ddcseyglpp nsldpsvtwn diywlqslth lpiiikgilt kedaelavrh
      241 gvqgiivsnh ggrqldggsa tidalvevve avqdkvevyl dggirkgsdi lkalalgakc
      301 vfigrpalwg laykgeeglq dvlrilqdef rlsmalagca nvsdigrhlv qfskl
//
LOCUS       XP_053912800             287 aa            linear   VRT 09-MAR-2023
DEFINITION  2-Hydroxyacid oxidase 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912800
VERSION     XP_053912800.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056825.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..287
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..287
                     /product="2-Hydroxyacid oxidase 2 isoform X2"
                     /calculated_mol_wt=31647
     Region          13..283
                     /region_name="FMN_dh"
                     /note="FMN-dependent dehydrogenase; pfam01070"
                     /db_xref="CDD:426029"
     Site            order(24,108,134,182,185)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:239203"
     Site            order(108,134,182)
                     /site_type="active"
                     /note="putative catalytic residues [active]"
                     /db_xref="CDD:239203"
     CDS             1..287
                     /gene="HAO2"
                     /coded_by="XM_054056825.1:95..958"
                     /db_xref="GeneID:104055666"
ORIGIN      
        1 mamvclsdfe ayakkylpki awdffaagad dcitrdenil aykrihlrpr mlrdvsmmdi
       61 rtklqgteis fpvgiaptgf hqlawpdgek stargkrrdd irngfrlpph mklknlegaf
      121 egddcseygl ppnsldpsvt wndiywlqsl thlpiiikgi ltkedaelav rhgvqgiivs
      181 nhggrqldgg satidalvev veavqdkvev yldggirkgs dilkalalga kcvfigrpal
      241 wglaykgeeg lqdvlrilqd efrlsmalag canvsdigrh lvqfskl
//
LOCUS       XP_009555243             275 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 45A [Cuculus canorus].
ACCESSION   XP_009555243
VERSION     XP_009555243.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556948.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..275
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..275
                     /product="transmembrane protein 45A"
                     /calculated_mol_wt=31552
     Region          120..240
                     /region_name="DUF716"
                     /note="Family of unknown function (DUF716); pfam04819"
                     /db_xref="CDD:461443"
     CDS             1..275
                     /gene="TMEM45A"
                     /coded_by="XM_009556948.2:282..1109"
                     /db_xref="GeneID:104055772"
ORIGIN      
        1 mgnfkghalp gsffllfglw wsvkyplkya crknknacyl gsragfqrle fvegiikgvf
       61 aligmvaeqf vpdgphlkly nyeekhwdhl mnwqhatmyl fygisglvdi vahgtnalpv
      121 amdrmmlsla vfiegflfcy hlhgramldv hvhqlllfai fgaavcifle vffrgsivle
      181 mlrtslcilq gswfwqigfv lyppngspew nqmdhtnvmf ltmcycwhya faflilgvny
      241 tivswavrsk vkqsqsmeig llktserdqe seeei
//
LOCUS       XP_053912801             275 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 45A [Cuculus canorus].
ACCESSION   XP_053912801
VERSION     XP_053912801.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056826.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..275
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..275
                     /product="transmembrane protein 45A"
                     /calculated_mol_wt=31552
     Region          120..240
                     /region_name="DUF716"
                     /note="Family of unknown function (DUF716); pfam04819"
                     /db_xref="CDD:461443"
     CDS             1..275
                     /gene="TMEM45A"
                     /coded_by="XM_054056826.1:155..982"
                     /db_xref="GeneID:104055772"
ORIGIN      
        1 mgnfkghalp gsffllfglw wsvkyplkya crknknacyl gsragfqrle fvegiikgvf
       61 aligmvaeqf vpdgphlkly nyeekhwdhl mnwqhatmyl fygisglvdi vahgtnalpv
      121 amdrmmlsla vfiegflfcy hlhgramldv hvhqlllfai fgaavcifle vffrgsivle
      181 mlrtslcilq gswfwqigfv lyppngspew nqmdhtnvmf ltmcycwhya faflilgvny
      241 tivswavrsk vkqsqsmeig llktserdqe seeei
//
LOCUS       XP_009566686             259 aa            linear   VRT 09-MAR-2023
DEFINITION  complement C1q tumor necrosis factor-related protein 6 [Cuculus
            canorus].
ACCESSION   XP_009566686
VERSION     XP_009566686.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568391.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..259
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..259
                     /product="complement C1q tumor necrosis factor-related
                     protein 6"
                     /calculated_mol_wt=29163
     Region          78..119
                     /region_name="Collagen"
                     /note="Collagen triple helix repeat (20 copies);
                     pfam01391"
                     /db_xref="CDD:460189"
     Region          126..254
                     /region_name="C1q"
                     /note="C1q domain; pfam00386"
                     /db_xref="CDD:395310"
     CDS             1..259
                     /gene="C1QTNF6"
                     /coded_by="XM_009568391.2:142..921"
                     /db_xref="GeneID:104065863"
ORIGIN      
        1 mdtiysctll tflllplfvl gapadepnlt epapdtckrc cdpldsstda qplppshqhl
       61 pypmpevrpy initilkgek gdrgepgmpg kwgkegprge rgaqgqkgsk gqmgaagdpc
      121 khqyaafsvg rrkalhsseg fqvlifdtvf vnlynhfdmf ngkfycsvgg lyyfslnvht
      181 wnfketymhi mhneeeavil yaqpsdrsim qsqslmlelk endeiwvrly krerenaiys
      241 ddvdvyitfs gylvkssld
//
LOCUS       XP_053912804             259 aa            linear   VRT 09-MAR-2023
DEFINITION  complement C1q tumor necrosis factor-related protein 6 [Cuculus
            canorus].
ACCESSION   XP_053912804
VERSION     XP_053912804.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056829.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..259
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..259
                     /product="complement C1q tumor necrosis factor-related
                     protein 6"
                     /calculated_mol_wt=29163
     Region          78..119
                     /region_name="Collagen"
                     /note="Collagen triple helix repeat (20 copies);
                     pfam01391"
                     /db_xref="CDD:460189"
     Region          126..254
                     /region_name="C1q"
                     /note="C1q domain; pfam00386"
                     /db_xref="CDD:395310"
     CDS             1..259
                     /gene="C1QTNF6"
                     /coded_by="XM_054056829.1:131..910"
                     /db_xref="GeneID:104065863"
ORIGIN      
        1 mdtiysctll tflllplfvl gapadepnlt epapdtckrc cdpldsstda qplppshqhl
       61 pypmpevrpy initilkgek gdrgepgmpg kwgkegprge rgaqgqkgsk gqmgaagdpc
      121 khqyaafsvg rrkalhsseg fqvlifdtvf vnlynhfdmf ngkfycsvgg lyyfslnvht
      181 wnfketymhi mhneeeavil yaqpsdrsim qsqslmlelk endeiwvrly krerenaiys
      241 ddvdvyitfs gylvkssld
//
LOCUS       XP_053912805             259 aa            linear   VRT 09-MAR-2023
DEFINITION  complement C1q tumor necrosis factor-related protein 6 [Cuculus
            canorus].
ACCESSION   XP_053912805
VERSION     XP_053912805.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056830.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..259
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..259
                     /product="complement C1q tumor necrosis factor-related
                     protein 6"
                     /calculated_mol_wt=29163
     Region          78..119
                     /region_name="Collagen"
                     /note="Collagen triple helix repeat (20 copies);
                     pfam01391"
                     /db_xref="CDD:460189"
     Region          126..254
                     /region_name="C1q"
                     /note="C1q domain; pfam00386"
                     /db_xref="CDD:395310"
     CDS             1..259
                     /gene="C1QTNF6"
                     /coded_by="XM_054056830.1:207..986"
                     /db_xref="GeneID:104065863"
ORIGIN      
        1 mdtiysctll tflllplfvl gapadepnlt epapdtckrc cdpldsstda qplppshqhl
       61 pypmpevrpy initilkgek gdrgepgmpg kwgkegprge rgaqgqkgsk gqmgaagdpc
      121 khqyaafsvg rrkalhsseg fqvlifdtvf vnlynhfdmf ngkfycsvgg lyyfslnvht
      181 wnfketymhi mhneeeavil yaqpsdrsim qsqslmlelk endeiwvrly krerenaiys
      241 ddvdvyitfs gylvkssld
//
LOCUS       XP_053912806             544 aa            linear   VRT 09-MAR-2023
DEFINITION  immunoglobulin-like domain-containing receptor 1 [Cuculus canorus].
ACCESSION   XP_053912806
VERSION     XP_053912806.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056831.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..544
                     /product="immunoglobulin-like domain-containing receptor
                     1"
                     /calculated_mol_wt=61269
     Region          41..168
                     /region_name="V-set"
                     /note="Immunoglobulin V-set domain; pfam07686"
                     /db_xref="CDD:462230"
     Region          402..>510
                     /region_name="U2AF_lg"
                     /note="U2 snRNP auxilliary factor, large subunit, splicing
                     factor; TIGR01642"
                     /db_xref="CDD:273727"
     CDS             1..544
                     /gene="ILDR1"
                     /coded_by="XM_054056831.1:58..1692"
                     /db_xref="GeneID:104055851"
ORIGIN      
        1 maplgrcrga plllllaglp agylslmvtv qdveryttlf asvtlkcdys tsaqlqdvvv
       61 twrfksfckd pifdyysvsy qaglglgqdp stdcndsqrk vriviqksgq kepvlgidyq
      121 qrkitiqnra dlvisevmww dhgvyyctve apgdtsgdad kevklivlhw ltvlfivlgg
      181 llllmligic wcqccpqycc chvpcvccpt rcccneevle rhrfmkqaqa lapwmapkmf
      241 ygggdrnsql ssyllnpllq rdvslqnslp lvqpqaqlsa nkgvldyles eiqnlnmsql
      301 rpsshqrqav qpsllsslgs eimpppltnh issihgssns srpqraantt rpwdsiaedk
      361 renrrgplps ngdsyssysq epwdrqredh hhrlrtggyn grlqnskrdv spprqsergk
      421 ssgssssfyp eeakersshh rgrrqeptgr ldyqhhtsrs nnsgqrrhsy sppsrrgsws
      481 sseeqvrppm knrkrrhqsr ewpedkppsy cslevisgqd kkhkdiagpr sdkgsshsgr
      541 sivi
//
LOCUS       XP_053912807             749 aa            linear   VRT 09-MAR-2023
DEFINITION  amyloid-beta precursor protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053912807
VERSION     XP_053912807.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056832.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..749
                     /product="amyloid-beta precursor protein isoform X1"
                     /calculated_mol_wt=84367
     Region          22..186
                     /region_name="A4_EXTRA"
                     /note="amyloid A4; smart00006"
                     /db_xref="CDD:128326"
     Region          292..339
                     /region_name="Kunitz_ABPP-like"
                     /note="Kunitz domain found in the amyloid-beta precursor
                     protein (ABPP) subfamily; cd22607"
                     /db_xref="CDD:438650"
     Site            order(295..303,318,320,322)
                     /site_type="other"
                     /note="serine protease binding site [polypeptide binding]"
                     /db_xref="CDD:438650"
     Region          345..527
                     /region_name="APP_E2"
                     /note="E2 domain of amyloid precursor protein; pfam12925"
                     /db_xref="CDD:463752"
     Region          672..746
                     /region_name="JMTM_Notch_APP"
                     /note="juxtamembrane and transmembrane (JMTM) domain found
                     in Notch and APP family proteins; cl41775"
                     /db_xref="CDD:425406"
     Site            order(685..686,688..689,691..697,699..704)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:411983"
     CDS             1..749
                     /gene="APP"
                     /coded_by="XM_054056832.1:107..2356"
                     /db_xref="GeneID:104064778"
ORIGIN      
        1 mlphlallll asaralevpa dgnagllaep qiamfcgkln mhmnvqngkw esdpsgtktc
       61 igtkegilqy cqevypelqi tnvveanqpv tiqnwckrgw kqcnghphiv vpyrclvgef
      121 vsdallvpdk ckflhqermd vcethlhwht vakescseka mnlhdygmll pcgidkfrgv
      181 efvccplaee sdnldsadae dddsdvwwgg adadyadgsd gkvveeqaee deeltvvede
      241 daddddddgd eieeeteeey eeaterttsi atttttttes veevvrevcs eqaetgpcra
      301 misrwyfdva egkcapffyg gcggnrnnfd seeycmavcg svipttaast pdavdkylet
      361 pgdenehahf qkakerleak hrermsqvmr eweeaerqak nlpkadkkav iqhfqekves
      421 leqeaanerq qlvethmarv eamlndrrri alenyitalq tvpprprhvf nmlkkyvrae
      481 qkdrqhtlkh fehvrmvdpk kaaqirsqvm thlrviyerm nqslsflynv pavaeeiqde
      541 vdellqkeqn ysddvlanmi seprisygnd almpsltetk ttvellpvdg efslddlqpw
      601 hpfgvdsvpa ntenevepvd arpaadrglt trpgsgltnv kteeisevkm daefrhdsgy
      661 evhhqklvff aedvgsnkga iiglmvggvv iatvivitlv mlkkkqytsi hhgvvevdaa
      721 vtpeerhlsk mqqngyenpt ykffeqmqn
//
LOCUS       XP_053912808             746 aa            linear   VRT 09-MAR-2023
DEFINITION  amyloid-beta precursor protein isoform X2 [Cuculus canorus].
ACCESSION   XP_053912808
VERSION     XP_053912808.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056833.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..746
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..746
                     /product="amyloid-beta precursor protein isoform X2"
                     /calculated_mol_wt=83954
     Region          22..186
                     /region_name="A4_EXTRA"
                     /note="amyloid A4; smart00006"
                     /db_xref="CDD:128326"
     Region          292..339
                     /region_name="Kunitz_ABPP-like"
                     /note="Kunitz domain found in the amyloid-beta precursor
                     protein (ABPP) subfamily; cd22607"
                     /db_xref="CDD:438650"
     Site            order(295..303,318,320,322)
                     /site_type="other"
                     /note="serine protease binding site [polypeptide binding]"
                     /db_xref="CDD:438650"
     Region          345..524
                     /region_name="APP_E2"
                     /note="E2 domain of amyloid precursor protein; pfam12925"
                     /db_xref="CDD:463752"
     Region          669..743
                     /region_name="JMTM_Notch_APP"
                     /note="juxtamembrane and transmembrane (JMTM) domain found
                     in Notch and APP family proteins; cl41775"
                     /db_xref="CDD:425406"
     Site            order(682..683,685..686,688..694,696..701)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:411983"
     CDS             1..746
                     /gene="APP"
                     /coded_by="XM_054056833.1:107..2347"
                     /db_xref="GeneID:104064778"
ORIGIN      
        1 mlphlallll asaralevpa dgnagllaep qiamfcgkln mhmnvqngkw esdpsgtktc
       61 igtkegilqy cqevypelqi tnvveanqpv tiqnwckrgw kqcnghphiv vpyrclvgef
      121 vsdallvpdk ckflhqermd vcethlhwht vakescseka mnlhdygmll pcgidkfrgv
      181 efvccplaee sdnldsadae dddsdvwwgg adadyadgsd gkvveeqaee deeltvvede
      241 daddddddgd eieeeteeey eeaterttsi atttttttes veevvrevcs eqaetgpcra
      301 misrwyfdva egkcapffyg gcggnrnnfd seeycmavcg svipttaast pdavdkylet
      361 pgdenehahf qkakerleak hrermsqvmr eweeaerqak nlpkadkkav iqekvesleq
      421 eaanerqqlv ethmarveam lndrrriale nyitalqtvp prprhvfnml kkyvraeqkd
      481 rqhtlkhfeh vrmvdpkkaa qirsqvmthl rviyermnqs lsflynvpav aeeiqdevde
      541 llqkeqnysd dvlanmisep risygndalm psltetkttv ellpvdgefs lddlqpwhpf
      601 gvdsvpante nevepvdarp aadrglttrp gsgltnvkte eisevkmdae frhdsgyevh
      661 hqklvffaed vgsnkgaiig lmvggvviat vivitlvmlk kkqytsihhg vvevdaavtp
      721 eerhlskmqq ngyenptykf feqmqn
//
LOCUS       XP_053912810             693 aa            linear   VRT 09-MAR-2023
DEFINITION  amyloid-beta precursor protein isoform X3 [Cuculus canorus].
ACCESSION   XP_053912810
VERSION     XP_053912810.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056835.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..693
                     /product="amyloid-beta precursor protein isoform X3"
                     /calculated_mol_wt=78227
     Region          22..186
                     /region_name="A4_EXTRA"
                     /note="amyloid A4; smart00006"
                     /db_xref="CDD:128326"
     Region          289..471
                     /region_name="APP_E2"
                     /note="E2 domain of amyloid precursor protein; pfam12925"
                     /db_xref="CDD:463752"
     Region          616..690
                     /region_name="JMTM_Notch_APP"
                     /note="juxtamembrane and transmembrane (JMTM) domain found
                     in Notch and APP family proteins; cl41775"
                     /db_xref="CDD:425406"
     Site            order(629..630,632..633,635..641,643..648)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:411983"
     CDS             1..693
                     /gene="APP"
                     /coded_by="XM_054056835.1:107..2188"
                     /db_xref="GeneID:104064778"
ORIGIN      
        1 mlphlallll asaralevpa dgnagllaep qiamfcgkln mhmnvqngkw esdpsgtktc
       61 igtkegilqy cqevypelqi tnvveanqpv tiqnwckrgw kqcnghphiv vpyrclvgef
      121 vsdallvpdk ckflhqermd vcethlhwht vakescseka mnlhdygmll pcgidkfrgv
      181 efvccplaee sdnldsadae dddsdvwwgg adadyadgsd gkvveeqaee deeltvvede
      241 daddddddgd eieeeteeey eeaterttsi atttttttes veevvrvptt aastpdavdk
      301 yletpgdene hahfqkaker leakhrerms qvmreweeae rqaknlpkad kkaviqhfqe
      361 kvesleqeaa nerqqlveth marveamlnd rrrialenyi talqtvpprp rhvfnmlkky
      421 vraeqkdrqh tlkhfehvrm vdpkkaaqir sqvmthlrvi yermnqslsf lynvpavaee
      481 iqdevdellq keqnysddvl anmisepris ygndalmpsl tetkttvell pvdgefsldd
      541 lqpwhpfgvd svpantenev epvdarpaad rglttrpgsg ltnvkteeis evkmdaefrh
      601 dsgyevhhqk lvffaedvgs nkgaiiglmv ggvviatviv itlvmlkkkq ytsihhgvve
      661 vdaavtpeer hlskmqqngy enptykffeq mqn
//
LOCUS       XP_009555126             308 aa            linear   VRT 09-MAR-2023
DEFINITION  T-lymphocyte activation antigen CD86 isoform X1 [Cuculus canorus].
ACCESSION   XP_009555126
VERSION     XP_009555126.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556831.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555126.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..308
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..308
                     /product="T-lymphocyte activation antigen CD86 isoform X1"
                     /calculated_mol_wt=34343
     Region          46..152
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          56..60
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409508"
     Region          74..78
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409508"
     Region          113..117
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409508"
     Region          127..132
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409508"
     Region          144..147
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409508"
     Region          <179..245
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          189..194
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409505"
     Region          223..227
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409505"
     Region          236..241
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409505"
     CDS             1..308
                     /gene="CD86"
                     /coded_by="XM_009556831.2:1213..2139"
                     /db_xref="GeneID:104055672"
ORIGIN      
        1 macfllsqav kptevlapvh gksimevcis flyamillpg iaasvhqvks flnhtaylsc
       61 yfpnsqktdl kdlrvfwqkd tvevvhevyy gqekhdnlsp kyinrtkmdm dkwtlqllna
      121 gvmdegqykc iiqhrdkgsp kvihtsecll riianysqpe iewlhsgelk pneplnlscs
      181 ssggypkpkq mtwlishknt tegamghtdv sqdavtklys vtsqlnitvp tntltniscl
      241 lhlgeqlgsl vsvplsieiq vkemeqvkin ffgpliavti iiilllgfvi lkknrsisst
      301 nqsvslev
//
LOCUS       XP_053912812             303 aa            linear   VRT 09-MAR-2023
DEFINITION  T-lymphocyte activation antigen CD86 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912812
VERSION     XP_053912812.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056837.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..303
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..303
                     /product="T-lymphocyte activation antigen CD86 isoform X2"
                     /calculated_mol_wt=33996
     Region          41..147
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          51..55
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409508"
     Region          69..73
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409508"
     Region          108..112
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409508"
     Region          122..127
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409508"
     Region          139..142
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409508"
     Region          <174..240
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          184..189
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409505"
     Region          218..222
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409505"
     Region          231..236
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409505"
     CDS             1..303
                     /gene="CD86"
                     /coded_by="XM_054056837.1:127..1038"
                     /db_xref="GeneID:104055672"
ORIGIN      
        1 mlehfsaset rsleneisim evcisflyam illpgiaasv hqvksflnht aylscyfpns
       61 qktdlkdlrv fwqkdtvevv hevyygqekh dnlspkyinr tkmdmdkwtl qllnagvmde
      121 gqykciiqhr dkgspkviht secllriian ysqpeiewlh sgelkpnepl nlscsssggy
      181 pkpkqmtwli shknttegam ghtdvsqdav tklysvtsql nitvptntlt niscllhlge
      241 qlgslvsvpl sieiqvkeme qvkinffgpl iavtiiiill lgfvilkknr sisstnqsvs
      301 lev
//
LOCUS       XP_053912813             284 aa            linear   VRT 09-MAR-2023
DEFINITION  T-lymphocyte activation antigen CD86 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912813
VERSION     XP_053912813.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056838.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..284
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..284
                     /product="T-lymphocyte activation antigen CD86 isoform X3"
                     /calculated_mol_wt=31821
     Region          22..128
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          32..36
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409508"
     Region          50..54
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409508"
     Region          89..93
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409508"
     Region          103..108
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409508"
     Region          120..123
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409508"
     Region          <155..221
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          165..170
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409505"
     Region          199..203
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409505"
     Region          212..217
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409505"
     CDS             1..284
                     /gene="CD86"
                     /coded_by="XM_054056838.1:158..1012"
                     /db_xref="GeneID:104055672"
ORIGIN      
        1 mevcisflya millpgiaas vhqvksflnh taylscyfpn sqktdlkdlr vfwqkdtvev
       61 vhevyygqek hdnlspkyin rtkmdmdkwt lqllnagvmd egqykciiqh rdkgspkvih
      121 tsecllriia nysqpeiewl hsgelkpnep lnlscsssgg ypkpkqmtwl ishknttega
      181 mghtdvsqda vtklysvtsq lnitvptntl tniscllhlg eqlgslvsvp lsieiqvkem
      241 eqvkinffgp liavtiiiil llgfvilkkn rsisstnqsv slev
//
LOCUS       XP_009563863             226 aa            linear   VRT 09-MAR-2023
DEFINITION  collectrin [Cuculus canorus].
ACCESSION   XP_009563863
VERSION     XP_009563863.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565568.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..226
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..226
                     /product="collectrin"
                     /calculated_mol_wt=24887
     Region          27..175
                     /region_name="Collectrin"
                     /note="Renal amino acid transporter; pfam16959"
                     /db_xref="CDD:465322"
     CDS             1..226
                     /gene="CLTRN"
                     /coded_by="XM_009565568.2:80..760"
                     /db_xref="GeneID:104063398"
ORIGIN      
        1 mlrvllltlf vvtiahaelc kpdaqnafkv rlsiktalgd nayvwdanee ylfravvaft
       61 mrkysskstt risnvllcnv tdrvsfwfvv tdssenvttv pgseveaair mnrnrinsaf
      121 llsdktlqfl eitstlsppv epstpvwliv fgvvlcliva givflivagi qqrkkknkes
      181 tegenledkg evtvtvengi pcetldlkag hingvfaadd erftsl
//
LOCUS       XP_053912814             160 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich single-pass membrane protein 1 [Cuculus canorus].
ACCESSION   XP_053912814
VERSION     XP_053912814.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056839.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..160
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..160
                     /product="leucine-rich single-pass membrane protein 1"
                     /calculated_mol_wt=18116
     Region          1..125
                     /region_name="DUF4577"
                     /note="Domain of unknown function (DUF4577); pfam15145"
                     /db_xref="CDD:464529"
     CDS             1..160
                     /gene="LSMEM1"
                     /coded_by="XM_054056839.1:526..1008"
                     /db_xref="GeneID:104064342"
ORIGIN      
        1 merpsleinl pdtheegkly vvdslnnlnk lnvcpdrpqr vvdeeettga tgentagsni
       61 rnqslffvtf iltlivslal vsfvifliiq trnkmdqlss rlisekktie elkkmnnmil
      121 khlnqsgike kgrylftqsp dlhdylftha elkvpgesle
//
LOCUS       XP_053912816             160 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich single-pass membrane protein 1 [Cuculus canorus].
ACCESSION   XP_053912816
VERSION     XP_053912816.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056841.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..160
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..160
                     /product="leucine-rich single-pass membrane protein 1"
                     /calculated_mol_wt=18116
     Region          1..125
                     /region_name="DUF4577"
                     /note="Domain of unknown function (DUF4577); pfam15145"
                     /db_xref="CDD:464529"
     CDS             1..160
                     /gene="LSMEM1"
                     /coded_by="XM_054056841.1:507..989"
                     /db_xref="GeneID:104064342"
ORIGIN      
        1 merpsleinl pdtheegkly vvdslnnlnk lnvcpdrpqr vvdeeettga tgentagsni
       61 rnqslffvtf iltlivslal vsfvifliiq trnkmdqlss rlisekktie elkkmnnmil
      121 khlnqsgike kgrylftqsp dlhdylftha elkvpgesle
//
LOCUS       XP_053912817             160 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich single-pass membrane protein 1 [Cuculus canorus].
ACCESSION   XP_053912817
VERSION     XP_053912817.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056842.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..160
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..160
                     /product="leucine-rich single-pass membrane protein 1"
                     /calculated_mol_wt=18116
     Region          1..125
                     /region_name="DUF4577"
                     /note="Domain of unknown function (DUF4577); pfam15145"
                     /db_xref="CDD:464529"
     CDS             1..160
                     /gene="LSMEM1"
                     /coded_by="XM_054056842.1:497..979"
                     /db_xref="GeneID:104064342"
ORIGIN      
        1 merpsleinl pdtheegkly vvdslnnlnk lnvcpdrpqr vvdeeettga tgentagsni
       61 rnqslffvtf iltlivslal vsfvifliiq trnkmdqlss rlisekktie elkkmnnmil
      121 khlnqsgike kgrylftqsp dlhdylftha elkvpgesle
//
LOCUS       XP_009564963             160 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich single-pass membrane protein 1 [Cuculus canorus].
ACCESSION   XP_009564963
VERSION     XP_009564963.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566668.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564963.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..160
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..160
                     /product="leucine-rich single-pass membrane protein 1"
                     /calculated_mol_wt=18116
     Region          1..125
                     /region_name="DUF4577"
                     /note="Domain of unknown function (DUF4577); pfam15145"
                     /db_xref="CDD:464529"
     CDS             1..160
                     /gene="LSMEM1"
                     /coded_by="XM_009566668.2:346..828"
                     /db_xref="GeneID:104064342"
ORIGIN      
        1 merpsleinl pdtheegkly vvdslnnlnk lnvcpdrpqr vvdeeettga tgentagsni
       61 rnqslffvtf iltlivslal vsfvifliiq trnkmdqlss rlisekktie elkkmnnmil
      121 khlnqsgike kgrylftqsp dlhdylftha elkvpgesle
//
LOCUS       XP_053912818             160 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich single-pass membrane protein 1 [Cuculus canorus].
ACCESSION   XP_053912818
VERSION     XP_053912818.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056843.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..160
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..160
                     /product="leucine-rich single-pass membrane protein 1"
                     /calculated_mol_wt=18116
     Region          1..125
                     /region_name="DUF4577"
                     /note="Domain of unknown function (DUF4577); pfam15145"
                     /db_xref="CDD:464529"
     CDS             1..160
                     /gene="LSMEM1"
                     /coded_by="XM_054056843.1:317..799"
                     /db_xref="GeneID:104064342"
ORIGIN      
        1 merpsleinl pdtheegkly vvdslnnlnk lnvcpdrpqr vvdeeettga tgentagsni
       61 rnqslffvtf iltlivslal vsfvifliiq trnkmdqlss rlisekktie elkkmnnmil
      121 khlnqsgike kgrylftqsp dlhdylftha elkvpgesle
//
LOCUS       XP_053912819             299 aa            linear   VRT 09-MAR-2023
DEFINITION  regucalcin [Cuculus canorus].
ACCESSION   XP_053912819
VERSION     XP_053912819.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056844.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..299
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..299
                     /product="regucalcin"
                     /calculated_mol_wt=33139
     Region          16..264
                     /region_name="SGL"
                     /note="SMP-30/Gluconolactonase/LRE-like region; pfam08450"
                     /db_xref="CDD:462480"
     CDS             1..299
                     /gene="RGN"
                     /coded_by="XM_054056844.1:151..1050"
                     /db_xref="GeneID:104063714"
ORIGIN      
        1 mssikiecig segnrlgesp vwdekesall yvditgrkvc rwssvtnqvq aisvdapvss
       61 valrksgdyi itlgtrfaal kwkeqqvtti ehvdkdklnn rfndgkvdpa gryfagtmae
      121 eirpavlerh qgslytlfsd lsvvkhfnqv disngldwsl dhktffyids lsysvdafdy
      181 dlqtgkignr rsiyklekee sipdgmcidt egklwvacyd ggrvirldpe tgkrlqtvkl
      241 pvdkttsccf ggkdysemyv tsasdgmdke glsrqpqagr vfkitglgvk gvppypfag
//
LOCUS       XP_053912820             299 aa            linear   VRT 09-MAR-2023
DEFINITION  regucalcin [Cuculus canorus].
ACCESSION   XP_053912820
VERSION     XP_053912820.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056845.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..299
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..299
                     /product="regucalcin"
                     /calculated_mol_wt=33139
     Region          16..264
                     /region_name="SGL"
                     /note="SMP-30/Gluconolactonase/LRE-like region; pfam08450"
                     /db_xref="CDD:462480"
     CDS             1..299
                     /gene="RGN"
                     /coded_by="XM_054056845.1:147..1046"
                     /db_xref="GeneID:104063714"
ORIGIN      
        1 mssikiecig segnrlgesp vwdekesall yvditgrkvc rwssvtnqvq aisvdapvss
       61 valrksgdyi itlgtrfaal kwkeqqvtti ehvdkdklnn rfndgkvdpa gryfagtmae
      121 eirpavlerh qgslytlfsd lsvvkhfnqv disngldwsl dhktffyids lsysvdafdy
      181 dlqtgkignr rsiyklekee sipdgmcidt egklwvacyd ggrvirldpe tgkrlqtvkl
      241 pvdkttsccf ggkdysemyv tsasdgmdke glsrqpqagr vfkitglgvk gvppypfag
//
LOCUS       XP_053912821             299 aa            linear   VRT 09-MAR-2023
DEFINITION  regucalcin [Cuculus canorus].
ACCESSION   XP_053912821
VERSION     XP_053912821.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056846.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..299
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..299
                     /product="regucalcin"
                     /calculated_mol_wt=33139
     Region          16..264
                     /region_name="SGL"
                     /note="SMP-30/Gluconolactonase/LRE-like region; pfam08450"
                     /db_xref="CDD:462480"
     CDS             1..299
                     /gene="RGN"
                     /coded_by="XM_054056846.1:107..1006"
                     /db_xref="GeneID:104063714"
ORIGIN      
        1 mssikiecig segnrlgesp vwdekesall yvditgrkvc rwssvtnqvq aisvdapvss
       61 valrksgdyi itlgtrfaal kwkeqqvtti ehvdkdklnn rfndgkvdpa gryfagtmae
      121 eirpavlerh qgslytlfsd lsvvkhfnqv disngldwsl dhktffyids lsysvdafdy
      181 dlqtgkignr rsiyklekee sipdgmcidt egklwvacyd ggrvirldpe tgkrlqtvkl
      241 pvdkttsccf ggkdysemyv tsasdgmdke glsrqpqagr vfkitglgvk gvppypfag
//
LOCUS       XP_053912822             299 aa            linear   VRT 09-MAR-2023
DEFINITION  regucalcin [Cuculus canorus].
ACCESSION   XP_053912822
VERSION     XP_053912822.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056847.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..299
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..299
                     /product="regucalcin"
                     /calculated_mol_wt=33139
     Region          16..264
                     /region_name="SGL"
                     /note="SMP-30/Gluconolactonase/LRE-like region; pfam08450"
                     /db_xref="CDD:462480"
     CDS             1..299
                     /gene="RGN"
                     /coded_by="XM_054056847.1:125..1024"
                     /db_xref="GeneID:104063714"
ORIGIN      
        1 mssikiecig segnrlgesp vwdekesall yvditgrkvc rwssvtnqvq aisvdapvss
       61 valrksgdyi itlgtrfaal kwkeqqvtti ehvdkdklnn rfndgkvdpa gryfagtmae
      121 eirpavlerh qgslytlfsd lsvvkhfnqv disngldwsl dhktffyids lsysvdafdy
      181 dlqtgkignr rsiyklekee sipdgmcidt egklwvacyd ggrvirldpe tgkrlqtvkl
      241 pvdkttsccf ggkdysemyv tsasdgmdke glsrqpqagr vfkitglgvk gvppypfag
//
LOCUS       XP_009564734             243 aa            linear   VRT 09-MAR-2023
DEFINITION  BTB/POZ domain-containing protein KCTD14 [Cuculus canorus].
ACCESSION   XP_009564734
VERSION     XP_009564734.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566439.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564734.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..243
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..243
                     /product="BTB/POZ domain-containing protein KCTD14"
                     /calculated_mol_wt=27648
     Region          22..120
                     /region_name="BTB_POZ_KCTD14"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     channel tetramerization domain-containing protein 14
                     (KCTD14); cd18371"
                     /db_xref="CDD:349680"
     CDS             1..243
                     /gene="KCTD14"
                     /coded_by="XM_009566439.2:256..987"
                     /db_xref="GeneID:104064141"
ORIGIN      
        1 msissehkpl gkqvtgslht lspivelnvg gemytttlst lkkhpgskla emftgqpklr
       61 tdsegrffid rpgtyfkyil eylrsnqvpt qciqdvykea lfynieplik qledspqifg
      121 elvarkqfla hvpsysenie lmiriaraea vasrrssviv cvvrteedaa kcqdalnsld
      181 mdkksvvkfg pwkaapsifd lldciqmdve akgykisfqp haaekgfrfk shdyfykflf
      241 tww
//
LOCUS       XP_009566665             266 aa            linear   VRT 09-MAR-2023
DEFINITION  GTP-binding protein Rhes [Cuculus canorus].
ACCESSION   XP_009566665
VERSION     XP_009566665.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568370.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566665.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..266
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..266
                     /product="GTP-binding protein Rhes"
                     /calculated_mol_wt=30441
     Region          20..266
                     /region_name="Rhes_like"
                     /note="Ras homolog enriched in striatum (Rhes) and
                     activator of G-protein signaling 1 (Dexras1/AGS1);
                     cd04143"
                     /db_xref="CDD:133343"
     Site            26..33
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:133343"
     Site            order(27..28,75..76)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133343"
     Site            order(28..34,73,76,140..141,143,172..173)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:133343"
     Site            order(33..34,48,50,56..57,70..71,73,75..76,174)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133343"
     Site            order(49..50,54..57)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:133343"
     Site            49..56
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:133343"
     Site            51
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:133343"
     Site            73..76
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:133343"
     Site            order(75..76,79..93)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:133343"
     Site            140..143
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:133343"
     Site            172..174
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:133343"
     Site            263..266
                     /site_type="other"
                     /note="putative lipid modification site [posttranslational
                     modification]"
                     /db_xref="CDD:133343"
     CDS             1..266
                     /gene="RASD2"
                     /coded_by="XM_009568370.2:866..1666"
                     /db_xref="GeneID:104065848"
ORIGIN      
        1 mmktmsggnc tlnvpaknsy rmvvlgaskv gkssivsrfl ngrfedqytp tiedfhrkvy
       61 nirgdmyqld ildtsgnhpf pamrrlsilt gdvfvlvfsl dnresfdevk rlqkqilevk
      121 sclknktkes adlpmvicgn kndhseisrk vrsdegenlv ssdencayfe vsakkntnvd
      181 emfyvlfsma klphemspal hrkisiqygd tfqqktfrmr rvkdmdaygm ispfarrpsv
      241 nsdlkyiksk vlregqsrer ekctiq
//
LOCUS       XP_009566674             323 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent calcium channel gamma-2 subunit isoform X1
            [Cuculus canorus].
ACCESSION   XP_009566674
VERSION     XP_009566674.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568379.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..323
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..323
                     /product="voltage-dependent calcium channel gamma-2
                     subunit isoform X1"
                     /calculated_mol_wt=35936
     Region          6..197
                     /region_name="PMP22_Claudin"
                     /note="PMP-22/EMP/MP20/Claudin family; pfam00822"
                     /db_xref="CDD:395662"
     CDS             1..323
                     /gene="CACNG2"
                     /coded_by="XM_009568379.2:475..1446"
                     /db_xref="GeneID:104065855"
ORIGIN      
        1 mglfdrgvqm llttvgafaa fslmtiavgt dywlysrgvc ktktvsenet skkneevmth
       61 sglwrtccle gnfkglckqi dhfpedadye adtaeyflra vrassifpil svillfmggl
      121 ciaasefykt rhniilsagi ffvsaglsni igiivyisan agdpsksdsk knsysygwsf
      181 yfgalsfiia emvgvlavhm fidrhkqlra naratdylqs saitripsyr yryqrrsrss
      241 srstepshsr daspvgikgf ntlpsteism ytltrdplka tttptatyns drdnsflqvh
      301 nciqkenkds ihtntanrrt tpv
//
LOCUS       XP_009566675             300 aa            linear   VRT 09-MAR-2023
DEFINITION  voltage-dependent calcium channel gamma-2 subunit isoform X2
            [Cuculus canorus].
ACCESSION   XP_009566675
VERSION     XP_009566675.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568380.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..300
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..300
                     /product="voltage-dependent calcium channel gamma-2
                     subunit isoform X2"
                     /calculated_mol_wt=33508
     Region          1..174
                     /region_name="PMP22_Claudin"
                     /note="PMP-22/EMP/MP20/Claudin family; cl21598"
                     /db_xref="CDD:473919"
     CDS             1..300
                     /gene="CACNG2"
                     /coded_by="XM_009568380.2:674..1576"
                     /db_xref="GeneID:104065855"
ORIGIN      
        1 mtiavgtdyw lysrgvcktk tvsenetskk neevmthsgl wrtcclegnf kglckqidhf
       61 pedadyeadt aeyflravra ssifpilsvi llfmgglcia asefyktrhn iilsagiffv
      121 saglsniigi ivyisanagd psksdskkns ysygwsfyfg alsfiiaemv gvlavhmfid
      181 rhkqlranar atdylqssai tripsyryry qrrsrsssrs tepshsrdas pvgikgfntl
      241 psteismytl trdplkattt ptatynsdrd nsflqvhnci qkenkdsiht ntanrrttpv
//
LOCUS       XP_053912824             229 aa            linear   VRT 09-MAR-2023
DEFINITION  C-type lectin domain family 4 member A isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912824
VERSION     XP_053912824.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056849.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..229
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..229
                     /product="C-type lectin domain family 4 member A isoform
                     X1"
                     /calculated_mol_wt=26050
     Region          98..223
                     /region_name="CLECT_DC-SIGN_like"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in human dendritic cell (DC)-specific intercellular
                     adhesion molecule 3-grabbing non-integrin (DC-SIGN) and
                     the related receptor, DC-SIGN receptor (DC-SIGNR);
                     cd03590"
                     /db_xref="CDD:153060"
     Site            order(157,189,191,196,202..203,211..214)
                     /site_type="other"
                     /note="carbohydrate binding site"
                     /db_xref="CDD:153060"
     Site            order(167,192,196..197)
                     /site_type="other"
                     /note="calcium binding site 1 [ion binding]"
                     /db_xref="CDD:153060"
     Site            order(167,197)
                     /site_type="other"
                     /note="calcium binding site 3 [ion binding]"
                     /db_xref="CDD:153060"
     CDS             1..229
                     /gene="LOC104060640"
                     /coded_by="XM_054056849.1:467..1156"
                     /db_xref="GeneID:104060640"
ORIGIN      
        1 maseityaev kfknasptaa vevptqtkkh ehhpqkyppw lpwlisllll lvcialvill
       61 vipfshrgnq stvlqqkfme wlcvsampqh kgrgwlccpn gwkrfkkscy ymsvdmmnwa
      121 eseqnctamg shlvvintta eqtflteelq qsprgrnyyi gltaqalgqw qwvdqtpyne
      181 samfwrsgep snvaveacvv ihtnpkihnw ndiqcgnhyr iceaaaliv
//
LOCUS       XP_053912825             229 aa            linear   VRT 09-MAR-2023
DEFINITION  C-type lectin domain family 4 member A isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912825
VERSION     XP_053912825.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056850.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..229
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..229
                     /product="C-type lectin domain family 4 member A isoform
                     X1"
                     /calculated_mol_wt=26050
     Region          98..223
                     /region_name="CLECT_DC-SIGN_like"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in human dendritic cell (DC)-specific intercellular
                     adhesion molecule 3-grabbing non-integrin (DC-SIGN) and
                     the related receptor, DC-SIGN receptor (DC-SIGNR);
                     cd03590"
                     /db_xref="CDD:153060"
     Site            order(157,189,191,196,202..203,211..214)
                     /site_type="other"
                     /note="carbohydrate binding site"
                     /db_xref="CDD:153060"
     Site            order(167,192,196..197)
                     /site_type="other"
                     /note="calcium binding site 1 [ion binding]"
                     /db_xref="CDD:153060"
     Site            order(167,197)
                     /site_type="other"
                     /note="calcium binding site 3 [ion binding]"
                     /db_xref="CDD:153060"
     CDS             1..229
                     /gene="LOC104060640"
                     /coded_by="XM_054056850.1:555..1244"
                     /db_xref="GeneID:104060640"
ORIGIN      
        1 maseityaev kfknasptaa vevptqtkkh ehhpqkyppw lpwlisllll lvcialvill
       61 vipfshrgnq stvlqqkfme wlcvsampqh kgrgwlccpn gwkrfkkscy ymsvdmmnwa
      121 eseqnctamg shlvvintta eqtflteelq qsprgrnyyi gltaqalgqw qwvdqtpyne
      181 samfwrsgep snvaveacvv ihtnpkihnw ndiqcgnhyr iceaaaliv
//
LOCUS       XP_053912827             198 aa            linear   VRT 09-MAR-2023
DEFINITION  C-type lectin domain family 4 member A isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912827
VERSION     XP_053912827.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056852.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..198
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..198
                     /product="C-type lectin domain family 4 member A isoform
                     X2"
                     /calculated_mol_wt=22440
     Region          67..192
                     /region_name="CLECT_DC-SIGN_like"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in human dendritic cell (DC)-specific intercellular
                     adhesion molecule 3-grabbing non-integrin (DC-SIGN) and
                     the related receptor, DC-SIGN receptor (DC-SIGNR);
                     cd03590"
                     /db_xref="CDD:153060"
     Site            order(126,158,160,165,171..172,180..183)
                     /site_type="other"
                     /note="carbohydrate binding site"
                     /db_xref="CDD:153060"
     Site            order(136,161,165..166)
                     /site_type="other"
                     /note="calcium binding site 1 [ion binding]"
                     /db_xref="CDD:153060"
     Site            order(136,166)
                     /site_type="other"
                     /note="calcium binding site 3 [ion binding]"
                     /db_xref="CDD:153060"
     CDS             1..198
                     /gene="LOC104060640"
                     /coded_by="XM_054056852.1:468..1064"
                     /db_xref="GeneID:104060640"
ORIGIN      
        1 maseityaev kfknasptaa vevptqtkkh ehhpqkyppw lpwlisllll lvcialvill
       61 grgwlccpng wkrfkkscyy msvdmmnwae seqnctamgs hlvvinttae qtflteelqq
      121 sprgrnyyig ltaqalgqwq wvdqtpynes amfwrsgeps nvaveacvvi htnpkihnwn
      181 diqcgnhyri ceaaaliv
//
LOCUS       XP_009564770             161 aa            linear   VRT 09-MAR-2023
DEFINITION  arachidonate 5-lipoxygenase-activating protein [Cuculus canorus].
ACCESSION   XP_009564770
VERSION     XP_009564770.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566475.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..161
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..161
                     /product="arachidonate 5-lipoxygenase-activating protein"
                     /calculated_mol_wt=17781
     Region          10..128
                     /region_name="MAPEG"
                     /note="MAPEG family; pfam01124"
                     /db_xref="CDD:460074"
     CDS             1..161
                     /gene="ALOX5AP"
                     /coded_by="XM_009566475.2:329..814"
                     /db_xref="GeneID:104064172"
ORIGIN      
        1 mdretlgsiv llaivtlisv vqnaffaskv eheskhcngk gfqrpgssaf drvytanqnc
       61 ghayptflav lwcagllcsq apaafaglmy lfvrqkyfvg ylgertqstp gylfgkriil
      121 flflmsvagi lnyylifffg sdfemhikti tsaispllli p
//
LOCUS       XP_053912828             161 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: ragulator complex protein LAMTOR1 [Cuculus
            canorus].
ACCESSION   XP_053912828
VERSION     XP_053912828.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056853.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..161
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..161
                     /product="LOW QUALITY PROTEIN: ragulator complex protein
                     LAMTOR1"
                     /calculated_mol_wt=17025
     Region          21..85
                     /region_name="LAMTOR"
                     /note="Late endosomal/lysosomal adaptor and MAPK and MTOR
                     activator; pfam15454"
                     /db_xref="CDD:464726"
     CDS             1..161
                     /gene="LAMTOR1"
                     /coded_by="XM_054056853.1:110..595"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons"
                     /db_xref="GeneID:104057648"
ORIGIN      
        1 mgccyssete ssdqeeetkr lleppstppa kspsgaergc sgvpaartde qamlssilak
       61 tainiidvsa adsqgmeqhe ymdrarhyst rlamlsgslt rwkkppplps ltaqphqvla
      121 sdpvpxadlq qvsriaayaf salsqirvda xeelvvqfgi p
//
LOCUS       XP_053912829             343 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 51G2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912829
VERSION     XP_053912829.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056854.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..343
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..343
                     /product="olfactory receptor 51G2 isoform X1"
                     /calculated_mol_wt=38767
     Region          49..321
                     /region_name="7tmA_OR51-like"
                     /note="olfactory receptor family 51 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15222"
                     /db_xref="CDD:320350"
     Region          49..74
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320350"
     Region          81..107
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320350"
     Site            order(103,106..107,119..124,126..127,130,175,177..181,217,
                     220..222,224..226,228..229,274,277..278,280..281,284,
                     292..293,295..297,300,303..304)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320350"
     Region          119..149
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320350"
     Region          162..183
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320350"
     Region          217..247
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320350"
     Region          254..284
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320350"
     Region          293..318
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320350"
     CDS             1..343
                     /gene="LOC104056086"
                     /coded_by="XM_054056854.1:356..1387"
                     /db_xref="GeneID:104056086"
ORIGIN      
        1 misttlfgql lrdemerpcf ippgtnssqs rtlsfllggf pvwettrmws vplcfmylla
       61 llgnltilai igtdqslhvp mylflamlav adlglststf ptmlrmlwle dreisfgtcl
      121 aqmffihifa diesavilam afdryvaich plryssiltn svttkicvai imratvvlfp
      181 lpvllsqlcf trvrklshpy clhpdiikha gsdvrihsty glfvllstlg ldllfvllsy
      241 lfilktilsv atwrgrlkal ntcishicav llffipmicl smmhqfikhv spqaytftan
      301 lhflvppiln pivysvktkr irrrmlemvc qrelhkargg icq
//
LOCUS       XP_053912830             304 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 51G2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912830
VERSION     XP_053912830.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056855.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..304
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..304
                     /product="olfactory receptor 51G2 isoform X2"
                     /calculated_mol_wt=34472
     Region          49..282
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          49..73
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          82..104
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          120..142
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          179..202
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          221..243
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          254..279
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..304
                     /gene="LOC104056086"
                     /coded_by="XM_054056855.1:272..1186"
                     /db_xref="GeneID:104056086"
ORIGIN      
        1 misttlfgql lrdemerpcf ippgtnssqs rtlsfllggf pvwettrmws vplcfmylla
       61 llgnltilai igtdqslhvp mylflamlav adlglststf ptmlrmlwle dreisfgtcl
      121 aqmffihifa diesavilam afdryvaich plrvrklshp yclhpdiikh agsdvrihst
      181 yglfvllstl gldllfvlls ylfilktils vatwrgrlka lntcishica vllffipmic
      241 lsmmhqfikh vspqaytfta nlhflvppil npivysvktk rirrrmlemv cqrelhkarg
      301 gicq
//
LOCUS       XP_009556082             424 aa            linear   VRT 09-MAR-2023
DEFINITION  carboxypeptidase B2 [Cuculus canorus].
ACCESSION   XP_009556082
VERSION     XP_009556082.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557787.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..424
                     /product="carboxypeptidase B2"
                     /calculated_mol_wt=48988
     Region          30..106
                     /region_name="Propep_M14"
                     /note="Carboxypeptidase activation peptide; pfam02244"
                     /db_xref="CDD:460505"
     Region          120..421
                     /region_name="M14_CPB2"
                     /note="Peptidase M14 carboxypeptidase subfamily A/B-like;
                     Carboxypeptidase B2 subgroup; cd06246"
                     /db_xref="CDD:349465"
     Site            order(182,185,242,259..260,312..313,319,386)
                     /site_type="active"
                     /db_xref="CDD:349465"
     CDS             1..424
                     /gene="CPB2"
                     /coded_by="XM_009557787.2:61..1335"
                     /db_xref="GeneID:104056527"
ORIGIN      
        1 mkmkfyllcf tlfiwiqeky vfalprdqvl walpqtdeqv ealqdllntt evilwqpvvv
       61 enikkdgevh fyvsassins iksqlwrlsi qhkvsigdvq gliekqtvnd tvnprssssy
      121 yenyhsmkei yhwmeevvka hsdllqkiyi gssyekrply vlklsktqek sksaiwidcg
      181 iharewispa fclwfighai hvrdrdqtmt tllehfdfyv mpvinvdgye ytwthpsnrl
      241 wrksrsshgn skcigtdmnr nfdahwcgkg aspyechety cgpypesepe vkavarfvrd
      301 hkdiikayit mhsysqlvlf pysyttdksk dhdeleslak kaakaikrtt rkiyrpgpga
      361 qtiylapggs ddwaydlgik ysftielrdt gtygfllppq eikptcleal savkeiaqhv
      421 lqnl
//
LOCUS       XP_009554956             367 aa            linear   VRT 09-MAR-2023
DEFINITION  protein shisa-8 isoform X1 [Cuculus canorus].
ACCESSION   XP_009554956
VERSION     XP_009554956.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556661.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..367
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..367
                     /product="protein shisa-8 isoform X1"
                     /calculated_mol_wt=38533
     Region          56..228
                     /region_name="Shisa"
                     /note="Wnt and FGF inhibitory regulator; pfam13908"
                     /db_xref="CDD:464036"
     CDS             1..367
                     /gene="SHISA8"
                     /coded_by="XM_009556661.2:476..1579"
                     /db_xref="GeneID:104055533"
ORIGIN      
        1 maprmepsyv vglwclvlle pgrvwsgegs pgegvngsla paeatvpapt gatpggdrcr
       61 gyydvmgqwd ppfncnagiy qyccgtcgyr fccqfkpgrl dqsgcsnydt pnwvntgqpp
      121 trvdettedp ardktnmivy iicgvvaimv lvgiftklgl ekaqgpqtem tvsrtltdll
      181 kqpghspsdh tdglmggvqv plgegltrgp prngtdkppl nnavaitpsl grphghgkrl
      241 plasgldlpa payttyatlk agesapedfy rrfggleapp astlpfspae apmlpegcsl
      301 pkakgaklpg gpafsggweg gpphgprrpg laalrleglp dtfspatply gqptrhlatn
      361 sktevtv
//
LOCUS       XP_053912832             333 aa            linear   VRT 09-MAR-2023
DEFINITION  protein shisa-8 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912832
VERSION     XP_053912832.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056857.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..333
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..333
                     /product="protein shisa-8 isoform X2"
                     /calculated_mol_wt=36053
     Region          56..228
                     /region_name="Shisa"
                     /note="Wnt and FGF inhibitory regulator; pfam13908"
                     /db_xref="CDD:464036"
     CDS             1..333
                     /gene="SHISA8"
                     /coded_by="XM_054056857.1:480..1481"
                     /db_xref="GeneID:104055533"
ORIGIN      
        1 maprmepsyv vglwclvlle pgrvwsgegs pgegvngsla paeatvpapt gatpggdrcr
       61 gyydvmgqwd ppfncnagiy qyccgtcgyr fccqfkpgrl dqsgcsnydt pnwvntgqpp
      121 trvdettedp ardktnmivy iicgvvaimv lvgiftklgl ekaqgpqtem tvsrtltdll
      181 kqpghspsdh tdglmggvqv plgegltrgp prngtdkppl nnavaitpsl grphghgkrl
      241 plasgldlpa payttyatlk agarlrsrsd gwnhwedcrf yadtegwpwr kmhcpssfwr
      301 wclltalhhq egqatplirt mnfghsqptp gng
//
LOCUS       XP_053912833             318 aa            linear   VRT 09-MAR-2023
DEFINITION  olfactory receptor 14A16-like [Cuculus canorus].
ACCESSION   XP_053912833
VERSION     XP_053912833.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056858.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..318
                     /product="olfactory receptor 14A16-like"
                     /calculated_mol_wt=34966
     Region          23..292
                     /region_name="7tmA_OR14-like"
                     /note="olfactory receptor family 14 and related proteins,
                     member of the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15227"
                     /db_xref="CDD:320355"
     Region          24..50
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320355"
     Region          57..83
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320355"
     Site            order(79,82..83,95..100,102..103,106,151,153..157,193,
                     196..198,200..202,204..205,250,253..254,256..257,260,
                     266..267,269..271,274,277..278)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320355"
     Region          95..125
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320355"
     Region          137..158
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320355"
     Region          193..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320355"
     Region          230..260
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320355"
     Region          267..292
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320355"
     CDS             1..318
                     /gene="LOC128850988"
                     /coded_by="XM_054056858.1:25..981"
                     /db_xref="GeneID:128850988"
ORIGIN      
        1 msnsssitqf lllafadtre lqllhfwlfl giylaallgn gliittiacd hhlhtpmyff
       61 llnlsvldlg sistivpkam anslldtrii sytgcvvqvf lyvffisaey slltvmsydr
      121 yvaickplhy gtllgsracv hmaaaawgag fltallhtan tfslslcqgs avdqffceip
      181 qilklscshs ylrvaglsvf gvclsfgcfv fivvsyvqif ravlripseq grhkafstcl
      241 phlavvslli smsffaylkp ptisspsldl vvsflysvvp pvlnpliysl rnqqlkdavw
      301 klifgwfsea mncssssa
//
LOCUS       XP_053912834             178 aa            linear   VRT 09-MAR-2023
DEFINITION  centromere protein M [Cuculus canorus].
ACCESSION   XP_053912834
VERSION     XP_053912834.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056859.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..178
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..178
                     /product="centromere protein M"
                     /calculated_mol_wt=19679
     Region          5..172
                     /region_name="CENP-M"
                     /note="Centromere protein M (CENP-M); pfam11111"
                     /db_xref="CDD:463224"
     CDS             1..178
                     /gene="CENPM"
                     /coded_by="XM_054056859.1:74..610"
                     /db_xref="GeneID:104055530"
ORIGIN      
        1 madrlpplrg lpeqntgifl lvgsdedmqq klaetilqak ksftirihla tslplpsdsd
       61 rlppkidliv fmidiknkys lkkvedslay vdpsyflgkv cflvtgvgrv nccsiemnav
      121 wrlgevycsp mlfcelelea vrvstaqrlv rmlqicaghi pgvsalsfss lmwnsadv
//
LOCUS       XP_009556952             352 aa            linear   VRT 09-MAR-2023
DEFINITION  G-protein coupled receptor 183 [Cuculus canorus].
ACCESSION   XP_009556952
VERSION     XP_009556952.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009558657.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..352
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..352
                     /product="G-protein coupled receptor 183"
                     /calculated_mol_wt=39985
     Region          32..318
                     /region_name="7tmA_EBI2"
                     /note="Epstein-Barr virus (EBV)-induced gene 2, member of
                     the class A family of seven-transmembrane G
                     protein-coupled receptors; cd15159"
                     /db_xref="CDD:320287"
     Region          32..59
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320287"
     Region          67..92
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320287"
     Site            order(88,91..92,105..110,112..113,116,161,163..167,194,
                     197..199,201..203,205..206,258,261..262,264..265,268,
                     285..286,288..290,293,296..297)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320287"
     Region          105..135
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320287"
     Region          147..169
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320287"
     Region          194..223
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320287"
     Region          238..268
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320287"
     Region          286..311
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320287"
     CDS             1..352
                     /gene="LOC104057311"
                     /coded_by="XM_009558657.2:119..1177"
                     /db_xref="GeneID:104057311"
ORIGIN      
        1 mavgeatfpp anltssnhss cnvhnhhfsa kvifslfytt llvfgacgni lalfitfqrr
       61 kkklnstdly lvnlalsdal ftlalpgria yyilefdwpf gdwfcrataf ifymntyvgi
      121 yfmtcvsvdr yiavvrtrhp griqnmnrar gvcvliwslv flqtaplllr pmtrrmgdkl
      181 tcmeyfnfee ipklpylllg acmlgfflpv giilvcyvri nlklcqtake npltvknghh
      241 hraftvilvv llavllcftp yhlnivqfmv rkilyqpscr eqqafkmslq vtvafmnlnc
      301 cidpviyffa frgykrrllr ifrnsgsmat sstaktpses nsnsqqpgsv sa
//
LOCUS       XP_009555479             309 aa            linear   VRT 09-MAR-2023
DEFINITION  T-cell surface antigen CD2 [Cuculus canorus].
ACCESSION   XP_009555479
VERSION     XP_009555479.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557184.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555479.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..309
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..309
                     /product="T-cell surface antigen CD2"
                     /calculated_mol_wt=35809
     Region          38..107
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          48..52
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409550"
     Region          83..87
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409550"
     Region          97..102
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409550"
     CDS             1..309
                     /gene="CD2"
                     /coded_by="XM_009557184.2:133..1062"
                     /db_xref="GeneID:104055983"
ORIGIN      
        1 mnfwrillvk cllllfpsvk csvsnwiyma vnesallnit aaagsiydat wlrdrkrflq
       61 ikdkkvkyyv nkdqcrckvf lngtlkierv mkedsgkytv tvyeqdgklk aeedimfivq
      121 epvpqpilta ecrnktilvk ceakqktkde tfiieltqek nkkiqknats ldlttqysgm
      181 frcvlknqvs kkmaekvikc pgqldfylil siaggtiffv ifvilviyci rkkkaerlen
      241 edeeqmmqar qvdcemvvre lpqppcnptp kqlrvqqrpl pqpqvqqqal pprprprtpr
      301 tpnhprerp
//
LOCUS       XP_009563859             387 aa            linear   VRT 09-MAR-2023
DEFINITION  gastrin-releasing peptide receptor [Cuculus canorus].
ACCESSION   XP_009563859
VERSION     XP_009563859.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565564.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..387
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..387
                     /product="gastrin-releasing peptide receptor"
                     /calculated_mol_wt=43421
     Region          43..335
                     /region_name="7tmA_GRPR"
                     /note="gastrin-releasing peptide receptor, member of the
                     class A family of seven-transmembrane G protein-coupled
                     receptors; cd15124"
                     /db_xref="CDD:320252"
     Region          44..70
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320252"
     Region          77..103
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320252"
     Site            order(99,102..103,115..120,122..123,126,171,173..177,209,
                     212..214,216..218,220..221,279,282..283,285..286,289,
                     302..303,305..307,310,313..314)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:320252"
     Region          115..145
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320252"
     Region          157..177
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320252"
     Region          209..234
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320252"
     Region          259..289
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320252"
     Region          303..328
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320252"
     CDS             1..387
                     /gene="GRPR"
                     /coded_by="XM_009565564.2:485..1648"
                     /db_xref="GeneID:104063395"
ORIGIN      
        1 masgecllld ietdnfilyn isvnqsanls llgddwfypa flyaiptiyg iiiliglign
       61 itlikifctv ksmrnvpnlf isslalgdll llvtcvpvda sryladewlf grtgcklipf
      121 iqltsvgvsv ftltalsadr ykaivrpmdi qashalmkic vraaviwivs mllaipeavf
      181 sdlhpfhdkg tnktfiscap yphsdglhpk ihsmasflif yiiplsvisv yyyfiaknli
      241 rsaynipveg nvhvrkqies rkrlartvlv fvclfafcwl pthiiylyrs yhysevdtsv
      301 lhfiasicar ilaftnscvn pfalyllsks frkqfnnqlf ccrarllirs qsmarsttrm
      361 tslksanhsl atfslingnh vchegcv
//
LOCUS       XP_009566106             244 aa            linear   VRT 09-MAR-2023
DEFINITION  mitochondrial inner membrane protease ATP23 homolog isoform X1
            [Cuculus canorus].
ACCESSION   XP_009566106
VERSION     XP_009566106.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009567811.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009566106.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..244
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..244
                     /product="mitochondrial inner membrane protease ATP23
                     homolog isoform X1"
                     /calculated_mol_wt=27831
     Region          49..218
                     /region_name="Peptidase_M76"
                     /note="Peptidase M76 family; pfam09768"
                     /db_xref="CDD:430811"
     CDS             1..244
                     /gene="ATP23"
                     /coded_by="XM_009567811.2:83..817"
                     /db_xref="GeneID:104065348"
ORIGIN      
        1 mehgeaaspl apeergveee ddlgyrlfpd rnkkpqsflv rslftfhnrc qlmlrmtldt
       61 npyaqlllea mkqsgctvfn drhfscencd gcvsggfdsa tsqivlcqnn irhqshmnrv
      121 vthelihafd hcrahvdwfk nvkhlacsei raanlsgdct lmneiarfkf glkghhqtcv
      181 rdrairsila vrkvsketae kavdevfdac fndlepfgri phsktdakra ykdfqnrdry
      241 nanl
//
LOCUS       XP_053912835             128 aa            linear   VRT 09-MAR-2023
DEFINITION  mitochondrial inner membrane protease ATP23 homolog isoform X2
            [Cuculus canorus].
ACCESSION   XP_053912835
VERSION     XP_053912835.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056860.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..128
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..128
                     /product="mitochondrial inner membrane protease ATP23
                     homolog isoform X2"
                     /calculated_mol_wt=14667
     Region          <1..102
                     /region_name="Peptidase_M76"
                     /note="Peptidase M76 family; pfam09768"
                     /db_xref="CDD:430811"
     CDS             1..128
                     /gene="ATP23"
                     /coded_by="XM_054056860.1:244..630"
                     /db_xref="GeneID:104065348"
ORIGIN      
        1 mnrvvtheli hafdhcrahv dwfknvkhla cseiraanls gdctlmneia rfkfglkghh
       61 qtcvrdrair silavrkvsk etaekavdev fdacfndlep fgriphsktd akraykdfqn
      121 rdrynanl
//
LOCUS       XP_053912836             923 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor E2F7 [Cuculus canorus].
ACCESSION   XP_053912836
VERSION     XP_053912836.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056861.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..923
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..923
                     /product="transcription factor E2F7"
                     /calculated_mol_wt=100756
     Region          136..204
                     /region_name="E2F_TDP"
                     /note="E2F/DP family winged-helix DNA-binding domain;
                     pfam02319"
                     /db_xref="CDD:460530"
     Region          274..358
                     /region_name="E2F_TDP"
                     /note="E2F/DP family winged-helix DNA-binding domain;
                     pfam02319"
                     /db_xref="CDD:460530"
     Region          <604..832
                     /region_name="PLN03209"
                     /note="translocon at the inner envelope of chloroplast
                     subunit 62; Provisional"
                     /db_xref="CDD:178748"
     CDS             1..923
                     /gene="E2F7"
                     /coded_by="XM_054056861.1:60..2831"
                     /db_xref="GeneID:104061155"
ORIGIN      
        1 measalsrrd largrrgrge aahkenifdr srmapktpik nepvdlskqk gctpernpit
       61 pvklvdrpqp dpwtptanlk mlvsaaspdm rdrekkkelf rpienneqsn tpdslqydmv
      121 ddntadefek qrpsrkqksl gllcqkflar ypsyplstek ttisldevas ilgverrriy
      181 divnvleslh lvshvaknqy cwhgrhnlsq tlkalqeage lqygelmaff qhkeqdweyk
      241 fgerkkdtip esqdrplldf pepdctsasa ssrkdkslri msqkfvmlfl vsktkivtld
      301 iaakilieet qdtvdhskfk tkvrrlydia nvltslglik kvhvteergr kpafkwigpv
      361 eftgktdepr ghsptsdplp gmqrgactpy qihttgkqrf trhssfnvaq psegtrrkvs
      421 sepssphqkr qacivnsdey cskminlaav crqkiaednr nrtcatkptl ssgknpgans
      481 plsllpvpgd fdfcvntlpq avfpvvqadv pslslqngvn sqtlhpsmpa tsetengkpt
      541 llpnqpflcf pssslfmlcg glqennltet lpatgdggnk gaetpaavlq aacqkrssrk
      601 ctspaapadd eepaakkqtm eqsdvplslv vpkksfespk aestpgsgct savqleafhl
      661 dlaspdvpva adkdstrpld sqeqekwpqn kdpdepspgk ehiskenasq pflpqyiyvq
      721 ptaglsscnf lfsakqasga isltasqlps lsvpcvmvps aalasfplvc sptiaspvsp
      781 vpdgsfsaaa smnfsvssla sttpvfvgtt avvtpkvspt psvdhqqpth ptlhlspvla
      841 rsctavklds pmcvghpvtl lklqqpsstp ltpknirsac heaffktpgs lgdpvawkkt
      901 egtqtrnass vqrrleisst spd
//
LOCUS       XP_053912837             416 aa            linear   VRT 09-MAR-2023
DEFINITION  vasopressin V1a receptor [Cuculus canorus].
ACCESSION   XP_053912837
VERSION     XP_053912837.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056862.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..416
                     /product="vasopressin V1a receptor"
                     /calculated_mol_wt=45792
     Region          55..358
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          57..81
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          90..113
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          128..150
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          172..188
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          217..240
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          289..311
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          326..351
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     Region          371..416
                     /region_name="V1R_C"
                     /note="Vasopressin V1 receptor, C-terminal; pfam08983"
                     /db_xref="CDD:430355"
     CDS             1..416
                     /gene="AVPR1A"
                     /coded_by="XM_054056862.1:47..1297"
                     /db_xref="GeneID:104061497"
ORIGIN      
        1 mrlgggspra aspengsrwr aaepggspgp eawsgapngs lggwdpfgrd eelakleiav
       61 lavafaaava gngsvllalr rtprkasrmh lfirhlslad lvvaffqvlp qlcwevthrf
      121 hgpdglcrvv khlqvfgmfa saymlvamta dryiavchpl ktlqqptkrs ygmiaaawal
      181 slllstpqyf ifslseverg srvfdcwahf impwgprayv twitggifva pvlvlvtcyg
      241 ficcriwrna rgkarpgaav rgaggrrgvl lapcvsgagt israkirtvk mtfviisayv
      301 vcwapfftiq mwsvwdqrfp wvdsentatt vtallaslns ccnpwiymff sghllqdciq
      361 sfpccqkikq tlskedsnsn srrqtsftnn rspthslntw resphsksns fipipt
//
LOCUS       XP_009564968             220 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 139 [Cuculus canorus].
ACCESSION   XP_009564968
VERSION     XP_009564968.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566673.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564968.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..220
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..220
                     /product="transmembrane protein 139"
                     /calculated_mol_wt=24205
     Region          <38..179
                     /region_name="TMEM51"
                     /note="Transmembrane protein 51; pfam15345"
                     /db_xref="CDD:464663"
     CDS             1..220
                     /gene="TMEM139"
                     /coded_by="XM_009566673.2:676..1338"
                     /db_xref="GeneID:104064348"
ORIGIN      
        1 mlletkwkni rqallllfta allvgvimla isstinpvgy fflgvggvcl vgyllsvfae
       61 cylknqqrhd aneippnrqs qaevntayea ptyeevmtms appiwtiasn palvpsplpl
      121 nepppynavm essaqeeirv dalrvsessd trhaqetdtg srmplqlvlp prlqrfvsdi
      181 hevkgiedrf eplepltppp ayesgingev fedafqpsvv
//
LOCUS       XP_053912838             421 aa            linear   VRT 09-MAR-2023
DEFINITION  heparan-sulfate 6-O-sulfotransferase 3 [Cuculus canorus].
ACCESSION   XP_053912838
VERSION     XP_053912838.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056863.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..421
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..421
                     /product="heparan-sulfate 6-O-sulfotransferase 3"
                     /calculated_mol_wt=48976
     Region          95..362
                     /region_name="Sulfotransfer_2"
                     /note="Sulfotransferase family; pfam03567"
                     /db_xref="CDD:427369"
     CDS             1..421
                     /gene="HS6ST3"
                     /coded_by="XM_054056863.1:238..1503"
                     /db_xref="GeneID:104057305"
ORIGIN      
        1 mderfnrwll ppllallfll ivyqyvspac pgaacprrpp gsaarrggsp aereeeeeam
       61 gaaeeevvaa lprvaakfpf argelcrrvr fdmrgrdviv flhiqktggt tfgrhlvrni
      121 rleqpcycra gqkkcachrp ggdkdtwlfs rfstgwscgl hadwteltsc vpaamerrgw
      181 agnrtlrnfy yitmlrdpvs rylsewkhvq rgatwktslh mcdgrsptpd elptcyegdd
      241 wsgvslqefm dcsynlannr qvrmladlsl vgcynltfmn eserntillq saknnlknma
      301 ffgltefqrk tqylfertfn lkfispftqf nvtrasnvdi gedvrqried lnfldvqlyd
      361 yakdlflqrf qyskqeehqk nrlkrreerr llreqrvhqw preeaaevvv tedynsqvar
      421 w
//
LOCUS       XP_053912839             294 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850989 [Cuculus canorus].
ACCESSION   XP_053912839
VERSION     XP_053912839.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056864.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..294
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..294
                     /product="uncharacterized protein LOC128850989"
                     /calculated_mol_wt=32790
     Region          <16..68
                     /region_name="Avian_gp85"
                     /note="Avian retrovirus envelope protein, gp85; pfam03708"
                     /db_xref="CDD:461019"
     Region          117..188
                     /region_name="Ebola_HIV-1-like_HR1-HR2"
                     /note="heptad repeat 1-heptad repeat 2 region (ectodomain)
                     of the transmembrane subunit of various endogenous
                     retroviruses (ERVs) and infectious retroviruses, including
                     Ebola virus and human immunodeficiency virus type 1
                     (HIV-1); cl02885"
                     /db_xref="CDD:413513"
     Site            order(117..119,121..122,124,127..129,131..133,135..136,
                     138..139,143,145..147,149,171,181,184..185,188)
                     /site_type="other"
                     /note="homotrimer interface [polypeptide binding]"
                     /db_xref="CDD:197370"
     Site            order(117..124,126..140,143..149)
                     /site_type="other"
                     /note="HR1"
                     /db_xref="CDD:197370"
     Region          <138..248
                     /region_name="TLV_coat"
                     /note="ENV polyprotein (coat polyprotein); pfam00429"
                     /db_xref="CDD:306850"
     Site            144..152
                     /site_type="other"
                     /note="immunosuppressive region"
                     /db_xref="CDD:197370"
     Site            180..188
                     /site_type="other"
                     /note="HR2"
                     /db_xref="CDD:197370"
     CDS             1..294
                     /gene="LOC128850989"
                     /coded_by="XM_054056864.1:1241..2125"
                     /db_xref="GeneID:128850989"
ORIGIN      
        1 mdqtfdkcna skidtpkrlp rgiflicgdr awngipaqpq ggpcylgkls lfhpnislim
       61 qwsqntsrke rsvheldcss lgpmrfwsef rqvatavilp gaaarkalrl ieqlgcwakd
      121 elnttsqild mltsdvqsvn havlqnraai dflllaqghg ceefegmccm nltdhstsih
      181 aklrklqqgl hqlkqedgrg idtwlqsmfg plspwllsvi keilrgaglv llviiafkis
      241 yhcimqslak nhtallvqke kggnvgkwln eeghedvekg ieewldeqrh gsvd
//
LOCUS       XP_009559390             285 aa            linear   VRT 09-MAR-2023
DEFINITION  sulfotransferase 6B1 [Cuculus canorus].
ACCESSION   XP_009559390
VERSION     XP_009559390.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009561095.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..285
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..285
                     /product="sulfotransferase 6B1"
                     /calculated_mol_wt=33105
     Region          37..275
                     /region_name="Sulfotransfer_1"
                     /note="Sulfotransferase domain; pfam00685"
                     /db_xref="CDD:425820"
     CDS             1..285
                     /gene="LOC104059391"
                     /coded_by="XM_009561095.2:77..934"
                     /db_xref="GeneID:104059391"
ORIGIN      
        1 msnsgeaeli hvfkgirfti rsspellkhl dtfdareddv llvsypksgt hwlagivtkl
       61 yntqvtltsp iefgdiskle elnklsskri ipthldynml psnfknkkck miyisrnpkd
      121 tavsmyhyyr dnpnlptidt wtaffdlflk gdvvcgswfd hflsweehkn dknilflfye
      181 dmkkdlpkiv keitlflgln isdndiqdic kkssfsemks ntekensdpn htvcaltsnr
      241 klvfrkgavg dwknhftpkq nrrfeeifne kmklskmaks vtyef
//
LOCUS       XP_009566666             154 aa            linear   VRT 09-MAR-2023
DEFINITION  myoglobin [Cuculus canorus].
ACCESSION   XP_009566666
VERSION     XP_009566666.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568371.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..154
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..154
                     /product="myoglobin"
                     /calculated_mol_wt=17356
     Region          7..154
                     /region_name="Globin-like"
                     /note="Globin-like protein superfamily; cl21461"
                     /db_xref="CDD:473869"
     Site            order(33,65,68..69,72,90,93..94,105,108)
                     /site_type="other"
                     /note="cofactor binding site [chemical binding]"
                     /db_xref="CDD:271277"
     CDS             1..154
                     /gene="MB"
                     /coded_by="XM_009568371.2:87..551"
                     /db_xref="GeneID:104065849"
ORIGIN      
        1 mglsdqewqk vltiwgkves dlpghghavl mrlfqdhpet mdrfekfkdl ktpdqmkgse
       61 alkkhgvtvl tqlgkilkqk gnheselkpl aqthatqhki pvkylefise viikviaekh
      121 sadfgadsqa amkkalelfr ndmaskykef gfqg
//
LOCUS       XP_053912841            1059 aa            linear   VRT 09-MAR-2023
DEFINITION  extracellular calcium-sensing receptor [Cuculus canorus].
ACCESSION   XP_053912841
VERSION     XP_053912841.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056866.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1059
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1059
                     /product="extracellular calcium-sensing receptor"
                     /calculated_mol_wt=118056
     Region          33..529
                     /region_name="PBP1_CaSR"
                     /note="ligand-binding domain of the CaSR calcium-sensing
                     receptor, a member of the family C receptors within the
                     G-protein coupled receptor superfamily; cd06364"
                     /db_xref="CDD:380587"
     Site            order(50..55,104..105,108,112,152,155,159,161,172..173,
                     178..179,215,220,227,242,246,442,464)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:380587"
     Site            order(66,70,145..147,168..170,297..298)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:380587"
     Region          537..590
                     /region_name="NCD3G"
                     /note="Nine Cysteines Domain of family 3 GPCR; pfam07562"
                     /db_xref="CDD:462210"
     Region          610..861
                     /region_name="7tmC_CaSR"
                     /note="calcium-sensing receptor, member of the class C of
                     seven-transmembrane G protein-coupled receptors; cd15282"
                     /db_xref="CDD:320409"
     Region          610..635
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320409"
     Site            order(613,616..617,620..621,623..624,658,662,665..666,674,
                     678)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:320409"
     Region          647..668
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320409"
     Site            order(667,679..680,683..684,687,767,772,775..776,779,813,
                     816..817,820,824,832..833,836,839,843)
                     /site_type="other"
                     /note="putative allosteric modulator binding site
                     [chemical binding]"
                     /db_xref="CDD:320409"
     Region          677..701
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320409"
     Region          725..741
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320409"
     Region          768..794
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320409"
     Region          802..825
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320409"
     Region          830..855
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320409"
     CDS             1..1059
                     /gene="CASR"
                     /coded_by="XM_054056866.1:494..3673"
                     /db_xref="GeneID:104055668"
ORIGIN      
        1 mtlyscclil llftwntaay gpnqraqkkg diilgglfpi hfgvaakdqd lksrpesvec
       61 irynfrgfrw lqamifaiee inssptllpn mtlgyrifdt cntvskalea tlsfvaqnki
      121 dslnldefcn csehipstia vvgatgsgis tavanllglf yipqvsyass srllsnknqf
      181 ksflrtipnd ehqatamadi ieyfrwnwvg tiaadddygr pgiekfreea eerdicidfs
      241 elisqysdee eiqqvveviq nstarvivvf ssgpdlepli keivrrnitg kiwlaseawa
      301 sssliampef frvigstigf alkagqipgf reflqkvhpk kstnngfake fweetfncyl
      361 pdgsknspts tsfhkgheeg lgagngtaaf rppctgdeni tsvetpymdy thlrisynvy
      421 lavysiahal qdiytctpgk glftngscad ikkveawqvl khlrhlnftn nmgeqvdfde
      481 fgdlvgnysi inwhlspedg svvfeevghy nvyakkgerl finenkilws gfskevpfsn
      541 csrdclpgtr kgiiegeptc cfecvdcpdg eysdetdasa cdkcpedyws nenhtscipk
      601 qieflswtep fgialtlfav lgifltsfvl gvftkfrntp ivkatnrels ylllfsllcc
      661 fssslffige pqnwtcrlrq pafgisfvlc iscilvktnr vllvfeakip tslhrkwwgl
      721 nlqfllvflc tfvqivicvi wlytappssy rnheledeii fitchegslm algfligytc
      781 llaaicfffa fksrklpenf neakfitfsm liffivwisf ipayastygk fvsaveviai
      841 laasfgllac iffnkvyiil fkpsrntiee vrcstaahaf kvaaratlrr snvsrkrsns
      901 lggstgstps ssissksnhe dpfplpasae rqrqqqrgck qkvsfgsgtv tlslsfeepq
      961 knamanrnak hrnsleaqns ddslmrhral lplqnnepls aepsfqaass petssqesmv
     1021 getkeevpsp etepsmpsan srnfigtggg svtentvhs
//
LOCUS       XP_053912842            1059 aa            linear   VRT 09-MAR-2023
DEFINITION  extracellular calcium-sensing receptor [Cuculus canorus].
ACCESSION   XP_053912842
VERSION     XP_053912842.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056867.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1059
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1059
                     /product="extracellular calcium-sensing receptor"
                     /calculated_mol_wt=118056
     Region          33..529
                     /region_name="PBP1_CaSR"
                     /note="ligand-binding domain of the CaSR calcium-sensing
                     receptor, a member of the family C receptors within the
                     G-protein coupled receptor superfamily; cd06364"
                     /db_xref="CDD:380587"
     Site            order(50..55,104..105,108,112,152,155,159,161,172..173,
                     178..179,215,220,227,242,246,442,464)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:380587"
     Site            order(66,70,145..147,168..170,297..298)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:380587"
     Region          537..590
                     /region_name="NCD3G"
                     /note="Nine Cysteines Domain of family 3 GPCR; pfam07562"
                     /db_xref="CDD:462210"
     Region          610..861
                     /region_name="7tmC_CaSR"
                     /note="calcium-sensing receptor, member of the class C of
                     seven-transmembrane G protein-coupled receptors; cd15282"
                     /db_xref="CDD:320409"
     Region          610..635
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320409"
     Site            order(613,616..617,620..621,623..624,658,662,665..666,674,
                     678)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:320409"
     Region          647..668
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320409"
     Site            order(667,679..680,683..684,687,767,772,775..776,779,813,
                     816..817,820,824,832..833,836,839,843)
                     /site_type="other"
                     /note="putative allosteric modulator binding site
                     [chemical binding]"
                     /db_xref="CDD:320409"
     Region          677..701
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320409"
     Region          725..741
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320409"
     Region          768..794
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320409"
     Region          802..825
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320409"
     Region          830..855
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320409"
     CDS             1..1059
                     /gene="CASR"
                     /coded_by="XM_054056867.1:374..3553"
                     /db_xref="GeneID:104055668"
ORIGIN      
        1 mtlyscclil llftwntaay gpnqraqkkg diilgglfpi hfgvaakdqd lksrpesvec
       61 irynfrgfrw lqamifaiee inssptllpn mtlgyrifdt cntvskalea tlsfvaqnki
      121 dslnldefcn csehipstia vvgatgsgis tavanllglf yipqvsyass srllsnknqf
      181 ksflrtipnd ehqatamadi ieyfrwnwvg tiaadddygr pgiekfreea eerdicidfs
      241 elisqysdee eiqqvveviq nstarvivvf ssgpdlepli keivrrnitg kiwlaseawa
      301 sssliampef frvigstigf alkagqipgf reflqkvhpk kstnngfake fweetfncyl
      361 pdgsknspts tsfhkgheeg lgagngtaaf rppctgdeni tsvetpymdy thlrisynvy
      421 lavysiahal qdiytctpgk glftngscad ikkveawqvl khlrhlnftn nmgeqvdfde
      481 fgdlvgnysi inwhlspedg svvfeevghy nvyakkgerl finenkilws gfskevpfsn
      541 csrdclpgtr kgiiegeptc cfecvdcpdg eysdetdasa cdkcpedyws nenhtscipk
      601 qieflswtep fgialtlfav lgifltsfvl gvftkfrntp ivkatnrels ylllfsllcc
      661 fssslffige pqnwtcrlrq pafgisfvlc iscilvktnr vllvfeakip tslhrkwwgl
      721 nlqfllvflc tfvqivicvi wlytappssy rnheledeii fitchegslm algfligytc
      781 llaaicfffa fksrklpenf neakfitfsm liffivwisf ipayastygk fvsaveviai
      841 laasfgllac iffnkvyiil fkpsrntiee vrcstaahaf kvaaratlrr snvsrkrsns
      901 lggstgstps ssissksnhe dpfplpasae rqrqqqrgck qkvsfgsgtv tlslsfeepq
      961 knamanrnak hrnsleaqns ddslmrhral lplqnnepls aepsfqaass petssqesmv
     1021 getkeevpsp etepsmpsan srnfigtggg svtentvhs
//
LOCUS       XP_053912843            1059 aa            linear   VRT 09-MAR-2023
DEFINITION  extracellular calcium-sensing receptor [Cuculus canorus].
ACCESSION   XP_053912843
VERSION     XP_053912843.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056868.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1059
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1059
                     /product="extracellular calcium-sensing receptor"
                     /calculated_mol_wt=118056
     Region          33..529
                     /region_name="PBP1_CaSR"
                     /note="ligand-binding domain of the CaSR calcium-sensing
                     receptor, a member of the family C receptors within the
                     G-protein coupled receptor superfamily; cd06364"
                     /db_xref="CDD:380587"
     Site            order(50..55,104..105,108,112,152,155,159,161,172..173,
                     178..179,215,220,227,242,246,442,464)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:380587"
     Site            order(66,70,145..147,168..170,297..298)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:380587"
     Region          537..590
                     /region_name="NCD3G"
                     /note="Nine Cysteines Domain of family 3 GPCR; pfam07562"
                     /db_xref="CDD:462210"
     Region          610..861
                     /region_name="7tmC_CaSR"
                     /note="calcium-sensing receptor, member of the class C of
                     seven-transmembrane G protein-coupled receptors; cd15282"
                     /db_xref="CDD:320409"
     Region          610..635
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320409"
     Site            order(613,616..617,620..621,623..624,658,662,665..666,674,
                     678)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:320409"
     Region          647..668
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320409"
     Site            order(667,679..680,683..684,687,767,772,775..776,779,813,
                     816..817,820,824,832..833,836,839,843)
                     /site_type="other"
                     /note="putative allosteric modulator binding site
                     [chemical binding]"
                     /db_xref="CDD:320409"
     Region          677..701
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320409"
     Region          725..741
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320409"
     Region          768..794
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320409"
     Region          802..825
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320409"
     Region          830..855
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320409"
     CDS             1..1059
                     /gene="CASR"
                     /coded_by="XM_054056868.1:280..3459"
                     /db_xref="GeneID:104055668"
ORIGIN      
        1 mtlyscclil llftwntaay gpnqraqkkg diilgglfpi hfgvaakdqd lksrpesvec
       61 irynfrgfrw lqamifaiee inssptllpn mtlgyrifdt cntvskalea tlsfvaqnki
      121 dslnldefcn csehipstia vvgatgsgis tavanllglf yipqvsyass srllsnknqf
      181 ksflrtipnd ehqatamadi ieyfrwnwvg tiaadddygr pgiekfreea eerdicidfs
      241 elisqysdee eiqqvveviq nstarvivvf ssgpdlepli keivrrnitg kiwlaseawa
      301 sssliampef frvigstigf alkagqipgf reflqkvhpk kstnngfake fweetfncyl
      361 pdgsknspts tsfhkgheeg lgagngtaaf rppctgdeni tsvetpymdy thlrisynvy
      421 lavysiahal qdiytctpgk glftngscad ikkveawqvl khlrhlnftn nmgeqvdfde
      481 fgdlvgnysi inwhlspedg svvfeevghy nvyakkgerl finenkilws gfskevpfsn
      541 csrdclpgtr kgiiegeptc cfecvdcpdg eysdetdasa cdkcpedyws nenhtscipk
      601 qieflswtep fgialtlfav lgifltsfvl gvftkfrntp ivkatnrels ylllfsllcc
      661 fssslffige pqnwtcrlrq pafgisfvlc iscilvktnr vllvfeakip tslhrkwwgl
      721 nlqfllvflc tfvqivicvi wlytappssy rnheledeii fitchegslm algfligytc
      781 llaaicfffa fksrklpenf neakfitfsm liffivwisf ipayastygk fvsaveviai
      841 laasfgllac iffnkvyiil fkpsrntiee vrcstaahaf kvaaratlrr snvsrkrsns
      901 lggstgstps ssissksnhe dpfplpasae rqrqqqrgck qkvsfgsgtv tlslsfeepq
      961 knamanrnak hrnsleaqns ddslmrhral lplqnnepls aepsfqaass petssqesmv
     1021 getkeevpsp etepsmpsan srnfigtggg svtentvhs
//
LOCUS       XP_009555478             335 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC104055981 [Cuculus canorus].
ACCESSION   XP_009555478
VERSION     XP_009555478.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557183.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555478.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..335
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..335
                     /product="uncharacterized protein LOC104055981"
                     /calculated_mol_wt=36020
     CDS             1..335
                     /gene="LOC104055981"
                     /coded_by="XM_009557183.2:77..1084"
                     /db_xref="GeneID:104055981"
ORIGIN      
        1 mdfsshftlq cllvmitvth gsvtrtgvls ggsavfsvgi qnlqnlskms kkdvkcltsv
       61 lndtllaecg tsagrclnlq ngslvlrsvd kedegnyefv fhnitrhftl qvfeptigiq
      121 cfpngtgkls cdvmsnesis fhwllngsvl sapeacikdg gkkvllektv pgefvcevkh
      181 gnsvmrtrpv vlscsygdll qypwfvyila gcaggavill vvvssviccc mkrkhkfial
      241 pseeekddgl tmsvvcseav ksppngdhve aqaaqvdcpp kpdaaqtaqs iepqpaveen
      301 lpvevepeem pvpevivdve sqenaldcsp dptdd
//
LOCUS       XP_053912844             554 aa            linear   VRT 09-MAR-2023
DEFINITION  L-dopachrome tautomerase [Cuculus canorus].
ACCESSION   XP_053912844
VERSION     XP_053912844.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056869.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..554
                     /product="L-dopachrome tautomerase"
                     /calculated_mol_wt=62672
     Region          214..443
                     /region_name="Tyrosinase"
                     /note="Common central domain of tyrosinase; pfam00264"
                     /db_xref="CDD:425566"
     CDS             1..554
                     /gene="DCT"
                     /coded_by="XM_054056869.1:137..1801"
                     /db_xref="GeneID:104054872"
ORIGIN      
        1 melqqsqvvp qrqspcsacl gpverqslhp timgtlrwlf waglgylscc yppqvqaqfp
       61 racmtvdalr lkrccpplgt epgnvcgslq grgqcqevqv dtqpwsglyt lrnvddrerw
      121 plkffnqscr ctgnfagync gdckfgwtgp dcntrkppvv rkdihsltae ereqffdald
      181 rakttihpdy viatqhwlsl lgptgaepqi ancsiynyfv wlhyysvrdt llgpgrpfta
      241 idfshqgpaf vtwhryhlll lerdlqrlmg ndsfalpywn fatgrnecdv ctdqlfgasr
      301 pgdlglisqs srfsrwqivc nslddynrlv tlcngsdegp lrrrlpegss eqlptaedvk
      361 kclslqefds ppffrnssfs frnalegfnk pdgalnspml slhnlvhsfl ngtsvlphaa
      421 andpifvvlh sftdaifdew mkrfnppdka wpeelapigh nrlynmvpff ppvtnnelfq
      481 taeqlgytya vdlpdsleet qmwavvvgst iggalialtm lilllvlfqh rrrrrgfepl
      541 mnvsfspkky meea
//
LOCUS       XP_009565733             276 aa            linear   VRT 09-MAR-2023
DEFINITION  endonuclease domain-containing 1 protein [Cuculus canorus].
ACCESSION   XP_009565733
VERSION     XP_009565733.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009567438.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..276
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..276
                     /product="endonuclease domain-containing 1 protein"
                     /calculated_mol_wt=31401
     Region          58..267
                     /region_name="NUC"
                     /note="DNA/RNA non-specific endonuclease; prokaryotic and
                     eukaryotic double- and single-stranded DNA and RNA
                     endonucleases also present in phosphodiesterases. They
                     exists as monomers and homodimers; cl00089"
                     /db_xref="CDD:469610"
     Site            order(139..140,142,172,180,184)
                     /site_type="active"
                     /db_xref="CDD:238043"
     Site            order(139..140,184)
                     /site_type="other"
                     /note="substrate binding site [chemical binding]"
                     /db_xref="CDD:238043"
     Site            172
                     /site_type="other"
                     /note="Mg2+ binding site [ion binding]"
                     /db_xref="CDD:238043"
     CDS             1..276
                     /gene="LOC104065017"
                     /coded_by="XM_009567438.2:179..1009"
                     /db_xref="GeneID:104065017"
ORIGIN      
        1 mllllllqis asclwlgrse vvtsfesscp qfffrgtppn ealepespaw icqryknqyy
       61 fatlydrkry ipvysaylye pgsgtrpktw lvepqlmgpt ypktmerewt llnnfnvsle
      121 klsksqavlq dyknltglnr ghlnpsghhs dsssrmatft ltnivpqnek lnggawnnye
      181 qqtmirstqd ckttyvvvga vpgnnyiakg kvnkpshiws saccvvdnnh rktwaviaen
      241 dknevqlltl geledvltrl ygrnqvslfd rdcpre
//
LOCUS       XP_009561838             453 aa            linear   VRT 09-MAR-2023
DEFINITION  lipase member I [Cuculus canorus].
ACCESSION   XP_009561838
VERSION     XP_009561838.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563543.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561838.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..453
                     /product="lipase member I"
                     /calculated_mol_wt=51317
     Region          39..324
                     /region_name="Pancreat_lipase_like"
                     /note="Pancreatic lipase-like enzymes. Lipases are
                     esterases that can hydrolyze long-chain acyl-triglycerides
                     into di- and monoglycerides, glycerol, and free fatty
                     acids at a water/lipid interface. A typical feature of
                     lipases is 'interfacial activation,' the...; cd00707"
                     /db_xref="CDD:238363"
     Site            155..159
                     /site_type="active"
                     /note="nucleophilic elbow [active]"
                     /db_xref="CDD:238363"
     Site            order(157,181,251)
                     /site_type="active"
                     /note="catalytic triad [active]"
                     /db_xref="CDD:238363"
     Site            order(236..237,248..249)
                     /site_type="active"
                     /note="active site flap/lid"
                     /db_xref="CDD:238363"
     CDS             1..453
                     /gene="LIPI"
                     /coded_by="XM_009563543.2:198..1559"
                     /db_xref="GeneID:104061589"
ORIGIN      
        1 mlklcfficl iywvksdeek kcpeftdlni gnalsgtelq vqlllytren pncserliad
       61 dvtlseylnt skkivfvihg frptgsppaw lgdmkdllls sedinliivd wnrgattvny
      121 itavencrkv aeilknyvdk mlvdgasldt mymigvslga hiagfvgqky ngkigritgl
      181 dpagpsftre ppegrldrtd aqfvdvihsd tdalgfkrpl gtidfypngg mdqpgcprtv
      241 fsglgyfkcd hqrsvmlfls slkricdita ypcesyvdyk rgkcvdcqaf qtmscpvlgy
      301 yadkwkkllv pmkspvkayf dtsdqdpfcm ynyllditvw nksirrgfik ikitdyagdt
      361 iesemnseas tfqqykrvki ltgfyrdldk iskisltfst ktligpkhkl rvlqmrlksl
      421 nnperlqlcr ydfvlmente ltfkpipcpe kgt
//
LOCUS       XP_009554586             435 aa            linear   VRT 09-MAR-2023
DEFINITION  probable imidazolonepropionase isoform X1 [Cuculus canorus].
ACCESSION   XP_009554586
VERSION     XP_009554586.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556291.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554586.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..435
                     /product="probable imidazolonepropionase isoform X1"
                     /calculated_mol_wt=47226
     Region          43..420
                     /region_name="Imidazolone-5PH"
                     /note="Imidazolonepropionase/imidazolone-5-propionate
                     hydrolase (Imidazolone-5PH) catalyzes the third step in
                     the histidine degradation pathway, the hydrolysis of
                     (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to
                     N-formimidoyl-L-glutamate. In bacteria; cd01296"
                     /db_xref="CDD:238621"
     Site            order(87,89,260,263,283,334)
                     /site_type="active"
                     /db_xref="CDD:238621"
     CDS             1..435
                     /gene="AMDHD1"
                     /coded_by="XM_009556291.2:87..1394"
                     /db_xref="GeneID:104055191"
ORIGIN      
        1 magrqlllle naeqlvlvcg rgerflrreg agspaelrga slvvgldgci kavgqadvir
       61 sqfsgatfes vidcsgkcvl pglvdahthp vwagdrvhef amklagasym eihqagggih
      121 ftvehtrkat eeelfntfkh rlermrrags tlvecksgyg lnletelkml kvierakqsm
      181 digisstycg ahsvpkgkta teatddiinn hlpklkelkl sgeihvnnid vfcekgvfdl
      241 estrrilqag kdiglqinfh gdelhpmksa elgaalgara ishleevsde gisamaraec
      301 aavllpttay mlrlkqppar kmleegviva lgsdfnpnay cfsmpmvmhl acvnlkmsmn
      361 ealaaatina ayalgksdth gsietgkqgd fiiinaprwe hliyqfgghe alidyvivkg
      421 kvvyqnercg tmssy
//
LOCUS       XP_053912846             407 aa            linear   VRT 09-MAR-2023
DEFINITION  probable imidazolonepropionase isoform X2 [Cuculus canorus].
ACCESSION   XP_053912846
VERSION     XP_053912846.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056871.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..407
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..407
                     /product="probable imidazolonepropionase isoform X2"
                     /calculated_mol_wt=44428
     Region          18..392
                     /region_name="Imidazolone-5PH"
                     /note="Imidazolonepropionase/imidazolone-5-propionate
                     hydrolase (Imidazolone-5PH) catalyzes the third step in
                     the histidine degradation pathway, the hydrolysis of
                     (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to
                     N-formimidoyl-L-glutamate. In bacteria; cd01296"
                     /db_xref="CDD:238621"
     Site            order(59,61,232,235,255,306)
                     /site_type="active"
                     /db_xref="CDD:238621"
     CDS             1..407
                     /gene="AMDHD1"
                     /coded_by="XM_054056871.1:386..1609"
                     /db_xref="GeneID:104055191"
ORIGIN      
        1 mlksqrccvs prellscrdg cikavgqadv irsqfsgatf esvidcsgkc vlpglvdaht
       61 hpvwagdrvh efamklagas ymeihqaggg ihftvehtrk ateeelfntf khrlermrra
      121 gstlvecksg yglnletelk mlkvierakq smdigissty cgahsvpkgk tateatddii
      181 nnhlpklkel klsgeihvnn idvfcekgvf dlestrrilq agkdiglqin fhgdelhpmk
      241 saelgaalga raishleevs degisamara ecaavllptt aymlrlkqpp arkmleegvi
      301 valgsdfnpn aycfsmpmvm hlacvnlkms mnealaaati naayalgksd thgsietgkq
      361 gdfiiinapr wehliyqfgg healidyviv kgkvvyqner cgtmssy
//
LOCUS       XP_009555244             199 aa            linear   VRT 09-MAR-2023
DEFINITION  leukemia NUP98 fusion partner 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_009555244
VERSION     XP_009555244.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556949.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555244.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..199
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..199
                     /product="leukemia NUP98 fusion partner 1 isoform X1"
                     /calculated_mol_wt=22710
     Region          5..167
                     /region_name="LNP1"
                     /note="Leukemia NUP98 fusion partner 1; pfam15419"
                     /db_xref="CDD:464709"
     CDS             1..199
                     /gene="LNP1"
                     /coded_by="XM_009556949.2:113..712"
                     /db_xref="GeneID:104055773"
ORIGIN      
        1 meyeedddif fakwmssfwg hnlieedeke grghkkrqtr lfserraslp atlsslhttr
       61 fhasakgsss ghlrgskefq edqdakchch rkasrtpsad ssgpetrsns iqefaesfek
      121 qlhlkskrsv slqpegmker rererlhlrk skshkrtgek seprreqged egseivpakh
      181 ngqfppqtsi ekgylctgs
//
LOCUS       XP_053912847             198 aa            linear   VRT 09-MAR-2023
DEFINITION  leukemia NUP98 fusion partner 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912847
VERSION     XP_053912847.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056872.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..198
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..198
                     /product="leukemia NUP98 fusion partner 1 isoform X2"
                     /calculated_mol_wt=22582
     Region          5..166
                     /region_name="LNP1"
                     /note="Leukemia NUP98 fusion partner 1; pfam15419"
                     /db_xref="CDD:464709"
     CDS             1..198
                     /gene="LNP1"
                     /coded_by="XM_054056872.1:115..711"
                     /db_xref="GeneID:104055773"
ORIGIN      
        1 meyeedddif fakwmssfwg hnlieedeke grghkkrqtr lfserraslp atlsslhttr
       61 fhasakgsss ghlrgskefq edqdakchch rkasrtpsad ssgpetrsns iqefaesfek
      121 qlhlkskrsv slpegmkerr ererlhlrks kshkrtgeks eprreqgede gseivpakhn
      181 gqfppqtsie kgylctgs
//
LOCUS       XP_053912849            1125 aa            linear   VRT 09-MAR-2023
DEFINITION  retinal guanylyl cyclase 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912849
VERSION     XP_053912849.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056874.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1125
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1125
                     /product="retinal guanylyl cyclase 2 isoform X1"
                     /calculated_mol_wt=125894
     Region          57..438
                     /region_name="PBP1_sensory_GC_DEF-like"
                     /note="ligand-binding domain of membrane guanylyl cyclases
                     (GC-D, GC-E, and GC-F) that are specifically expressed in
                     sensory tissues; cd06371"
                     /db_xref="CDD:380594"
     Site            order(105,130..131)
                     /site_type="other"
                     /note="putative Cl binding site [ion binding]"
                     /db_xref="CDD:380594"
     Site            order(114,118,136,140,145,202..203,206,209)
                     /site_type="other"
                     /note="putative dimer interface (closed form) [polypeptide
                     binding]"
                     /db_xref="CDD:380594"
     Site            order(136,140,202..203,206,209..210,221)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:380594"
     Site            order(239..240,264,271)
                     /site_type="other"
                     /note="putative dimer interface (open form) [polypeptide
                     binding]"
                     /db_xref="CDD:380594"
     Region          554..816
                     /region_name="PK_GC-2D"
                     /note="Pseudokinase domain of the membrane Guanylate
                     Cyclase receptor, GC-2D; cd14043"
                     /db_xref="CDD:270945"
     Region          <825..870
                     /region_name="HNOBA"
                     /note="Heme NO binding associated; pfam07701"
                     /db_xref="CDD:462234"
     Region          850..1042
                     /region_name="CYCc"
                     /note="Adenylyl- / guanylyl cyclase, catalytic domain;
                     smart00044"
                     /db_xref="CDD:214485"
     Site            order(888,890..895,930,932..934,937,1002..1004,1008..1009,
                     1012..1013,1051)
                     /site_type="active"
                     /note="nucleotidyl binding site [active]"
                     /db_xref="CDD:143636"
     Site            order(890,934)
                     /site_type="metal-binding"
                     /note="metal binding site [ion binding]"
                     /db_xref="CDD:143636"
     Site            order(895,907,910..911,914,918,930..931,990,993,
                     1003..1006,1009,1051)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:143636"
     CDS             1..1125
                     /gene="GUCY2F"
                     /coded_by="XM_054056874.1:553..3930"
                     /db_xref="GeneID:104064132"
ORIGIN      
        1 msfpllcphs lfwvlsrham lhrfntgnsf ktfvkallwl lfgiillcsp ahcsvfkigl
       61 vgpwncdpff skafphvaar lavgriskdp slnlghrldy vvlqeecets aalvkfidfg
      121 krssafigpl npgfcevatf lgenwnkaif swmcinykld ssihhptfar tlpsptrvlf
      181 timkyfnwah vgiiasnedi wmdtanklas alrnqglpvg ivtsmrkgek giedtwneik
      241 avhglriill cmhsvliggk eqatlltkal emgladgryv fvpydtllys lpyqnssfnv
      301 fdndnklqea ydavltitla sgertfydaf reakesgeii gdleatqvsp lfgtiydaiy
      361 fmamaidsal rkgarvsgan iakhtknfsf pgfshwvetd scgkglsnyv ildtdgcgnq
      421 lfpthllnms sdavkslgra ihfpsgappk pdsscwfdpd vlcnggiept vvilgvmlif
      481 alllfaagla slirhsilns qlfrgpnkii mtlddlifin pelykkrltl dsltdatsva
      541 adgrslksvt rslslkstda thetsnvaly egdwvwlkkf etgavhklrq sstsilrkmk
      601 dlrhenvnlf lgffsdcgif aivteycsrg sledllrned mkldwmfkss lvmdlikgir
      661 ylhhrdlahg rlksrncvvd grfvlkitdy gynelleaqk cpyiqpppee llwtapellr
      721 dpdmrrkgtf kgdiysfaii lqevvvrgpp ycmsdlsaee iikkvkkppp lcrpnivpel
      781 apleciqvmk qcwgeaperr ptfeevfykf ktinkgkktn iidsmlrmle qyssnledli
      841 rerteeleve kqktekllsq mlppsvaeal ktggtvepey fdqvtiyfsd ivgfttisal
      901 sepievvdll ndlytlfdav lgnhdvykve tigdaymvas glpkrngnkh aaeianmsld
      961 ilssvgtfkm rhmpeiplki riglhtgpcv agvvgltmpr yclfgdtvnt asrmestglp
     1021 yrihvsqstv dilrslnegy eiiprgktel kgkgvedtyw lvgkkgflkp lpkppdtksg
     1081 hnwpdmlsrk lrsvlkgtkr tltkatfkel gsmkeaeisi eedei
//
LOCUS       XP_053912850            1125 aa            linear   VRT 09-MAR-2023
DEFINITION  retinal guanylyl cyclase 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912850
VERSION     XP_053912850.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056875.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1125
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1125
                     /product="retinal guanylyl cyclase 2 isoform X1"
                     /calculated_mol_wt=125894
     Region          57..438
                     /region_name="PBP1_sensory_GC_DEF-like"
                     /note="ligand-binding domain of membrane guanylyl cyclases
                     (GC-D, GC-E, and GC-F) that are specifically expressed in
                     sensory tissues; cd06371"
                     /db_xref="CDD:380594"
     Site            order(105,130..131)
                     /site_type="other"
                     /note="putative Cl binding site [ion binding]"
                     /db_xref="CDD:380594"
     Site            order(114,118,136,140,145,202..203,206,209)
                     /site_type="other"
                     /note="putative dimer interface (closed form) [polypeptide
                     binding]"
                     /db_xref="CDD:380594"
     Site            order(136,140,202..203,206,209..210,221)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:380594"
     Site            order(239..240,264,271)
                     /site_type="other"
                     /note="putative dimer interface (open form) [polypeptide
                     binding]"
                     /db_xref="CDD:380594"
     Region          554..816
                     /region_name="PK_GC-2D"
                     /note="Pseudokinase domain of the membrane Guanylate
                     Cyclase receptor, GC-2D; cd14043"
                     /db_xref="CDD:270945"
     Region          <825..870
                     /region_name="HNOBA"
                     /note="Heme NO binding associated; pfam07701"
                     /db_xref="CDD:462234"
     Region          850..1042
                     /region_name="CYCc"
                     /note="Adenylyl- / guanylyl cyclase, catalytic domain;
                     smart00044"
                     /db_xref="CDD:214485"
     Site            order(888,890..895,930,932..934,937,1002..1004,1008..1009,
                     1012..1013,1051)
                     /site_type="active"
                     /note="nucleotidyl binding site [active]"
                     /db_xref="CDD:143636"
     Site            order(890,934)
                     /site_type="metal-binding"
                     /note="metal binding site [ion binding]"
                     /db_xref="CDD:143636"
     Site            order(895,907,910..911,914,918,930..931,990,993,
                     1003..1006,1009,1051)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:143636"
     CDS             1..1125
                     /gene="GUCY2F"
                     /coded_by="XM_054056875.1:550..3927"
                     /db_xref="GeneID:104064132"
ORIGIN      
        1 msfpllcphs lfwvlsrham lhrfntgnsf ktfvkallwl lfgiillcsp ahcsvfkigl
       61 vgpwncdpff skafphvaar lavgriskdp slnlghrldy vvlqeecets aalvkfidfg
      121 krssafigpl npgfcevatf lgenwnkaif swmcinykld ssihhptfar tlpsptrvlf
      181 timkyfnwah vgiiasnedi wmdtanklas alrnqglpvg ivtsmrkgek giedtwneik
      241 avhglriill cmhsvliggk eqatlltkal emgladgryv fvpydtllys lpyqnssfnv
      301 fdndnklqea ydavltitla sgertfydaf reakesgeii gdleatqvsp lfgtiydaiy
      361 fmamaidsal rkgarvsgan iakhtknfsf pgfshwvetd scgkglsnyv ildtdgcgnq
      421 lfpthllnms sdavkslgra ihfpsgappk pdsscwfdpd vlcnggiept vvilgvmlif
      481 alllfaagla slirhsilns qlfrgpnkii mtlddlifin pelykkrltl dsltdatsva
      541 adgrslksvt rslslkstda thetsnvaly egdwvwlkkf etgavhklrq sstsilrkmk
      601 dlrhenvnlf lgffsdcgif aivteycsrg sledllrned mkldwmfkss lvmdlikgir
      661 ylhhrdlahg rlksrncvvd grfvlkitdy gynelleaqk cpyiqpppee llwtapellr
      721 dpdmrrkgtf kgdiysfaii lqevvvrgpp ycmsdlsaee iikkvkkppp lcrpnivpel
      781 apleciqvmk qcwgeaperr ptfeevfykf ktinkgkktn iidsmlrmle qyssnledli
      841 rerteeleve kqktekllsq mlppsvaeal ktggtvepey fdqvtiyfsd ivgfttisal
      901 sepievvdll ndlytlfdav lgnhdvykve tigdaymvas glpkrngnkh aaeianmsld
      961 ilssvgtfkm rhmpeiplki riglhtgpcv agvvgltmpr yclfgdtvnt asrmestglp
     1021 yrihvsqstv dilrslnegy eiiprgktel kgkgvedtyw lvgkkgflkp lpkppdtksg
     1081 hnwpdmlsrk lrsvlkgtkr tltkatfkel gsmkeaeisi eedei
//
LOCUS       XP_053912851            1107 aa            linear   VRT 09-MAR-2023
DEFINITION  retinal guanylyl cyclase 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912851
VERSION     XP_053912851.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056876.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1107
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1107
                     /product="retinal guanylyl cyclase 2 isoform X2"
                     /calculated_mol_wt=123807
     Region          57..438
                     /region_name="PBP1_sensory_GC_DEF-like"
                     /note="ligand-binding domain of membrane guanylyl cyclases
                     (GC-D, GC-E, and GC-F) that are specifically expressed in
                     sensory tissues; cd06371"
                     /db_xref="CDD:380594"
     Site            order(105,130..131)
                     /site_type="other"
                     /note="putative Cl binding site [ion binding]"
                     /db_xref="CDD:380594"
     Site            order(114,118,136,140,145,202..203,206,209)
                     /site_type="other"
                     /note="putative dimer interface (closed form) [polypeptide
                     binding]"
                     /db_xref="CDD:380594"
     Site            order(136,140,202..203,206,209..210,221)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:380594"
     Site            order(239..240,264,271)
                     /site_type="other"
                     /note="putative dimer interface (open form) [polypeptide
                     binding]"
                     /db_xref="CDD:380594"
     Region          554..816
                     /region_name="PK_GC-2D"
                     /note="Pseudokinase domain of the membrane Guanylate
                     Cyclase receptor, GC-2D; cd14043"
                     /db_xref="CDD:270945"
     Region          <825..870
                     /region_name="HNOBA"
                     /note="Heme NO binding associated; pfam07701"
                     /db_xref="CDD:462234"
     Region          850..1042
                     /region_name="CYCc"
                     /note="Adenylyl- / guanylyl cyclase, catalytic domain;
                     smart00044"
                     /db_xref="CDD:214485"
     Site            order(888,890..895,930,932..934,937,1002..1004,1008..1009,
                     1012..1013,1051)
                     /site_type="active"
                     /note="nucleotidyl binding site [active]"
                     /db_xref="CDD:143636"
     Site            order(890,934)
                     /site_type="metal-binding"
                     /note="metal binding site [ion binding]"
                     /db_xref="CDD:143636"
     Site            order(895,907,910..911,914,918,930..931,990,993,
                     1003..1006,1009,1051)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:143636"
     CDS             1..1107
                     /gene="GUCY2F"
                     /coded_by="XM_054056876.1:553..3876"
                     /db_xref="GeneID:104064132"
ORIGIN      
        1 msfpllcphs lfwvlsrham lhrfntgnsf ktfvkallwl lfgiillcsp ahcsvfkigl
       61 vgpwncdpff skafphvaar lavgriskdp slnlghrldy vvlqeecets aalvkfidfg
      121 krssafigpl npgfcevatf lgenwnkaif swmcinykld ssihhptfar tlpsptrvlf
      181 timkyfnwah vgiiasnedi wmdtanklas alrnqglpvg ivtsmrkgek giedtwneik
      241 avhglriill cmhsvliggk eqatlltkal emgladgryv fvpydtllys lpyqnssfnv
      301 fdndnklqea ydavltitla sgertfydaf reakesgeii gdleatqvsp lfgtiydaiy
      361 fmamaidsal rkgarvsgan iakhtknfsf pgfshwvetd scgkglsnyv ildtdgcgnq
      421 lfpthllnms sdavkslgra ihfpsgappk pdsscwfdpd vlcnggiept vvilgvmlif
      481 alllfaagla slirhsilns qlfrgpnkii mtlddlifin pelykkrltl dsltdatsva
      541 adgrslksvt rslslkstda thetsnvaly egdwvwlkkf etgavhklrq sstsilrkmk
      601 dlrhenvnlf lgffsdcgif aivteycsrg sledllrned mkldwmfkss lvmdlikgir
      661 ylhhrdlahg rlksrncvvd grfvlkitdy gynelleaqk cpyiqpppee llwtapellr
      721 dpdmrrkgtf kgdiysfaii lqevvvrgpp ycmsdlsaee iikkvkkppp lcrpnivpel
      781 apleciqvmk qcwgeaperr ptfeevfykf ktinkgkktn iidsmlrmle qyssnledli
      841 rerteeleve kqktekllsq mlppsvaeal ktggtvepey fdqvtiyfsd ivgfttisal
      901 sepievvdll ndlytlfdav lgnhdvykve tigdaymvas glpkrngnkh aaeianmsld
      961 ilssvgtfkm rhmpeiplki riglhtgpcv agvvgltmpr yclfgdtvnt asrmestglp
     1021 yrihvsqstv dilrslnegy eiiprgktel kgkgvedtyw lvgkkgflkp lpkppdtksg
     1081 crphglppee iaefkrrkae kllgkra
//
LOCUS       XP_053912852            1103 aa            linear   VRT 09-MAR-2023
DEFINITION  retinal guanylyl cyclase 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912852
VERSION     XP_053912852.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056877.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1103
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1103
                     /product="retinal guanylyl cyclase 2 isoform X3"
                     /calculated_mol_wt=123181
     Region          57..438
                     /region_name="PBP1_sensory_GC_DEF-like"
                     /note="ligand-binding domain of membrane guanylyl cyclases
                     (GC-D, GC-E, and GC-F) that are specifically expressed in
                     sensory tissues; cd06371"
                     /db_xref="CDD:380594"
     Site            order(105,130..131)
                     /site_type="other"
                     /note="putative Cl binding site [ion binding]"
                     /db_xref="CDD:380594"
     Site            order(114,118,136,140,145,202..203,206,209)
                     /site_type="other"
                     /note="putative dimer interface (closed form) [polypeptide
                     binding]"
                     /db_xref="CDD:380594"
     Site            order(136,140,202..203,206,209..210,221)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:380594"
     Site            order(239..240,264,271)
                     /site_type="other"
                     /note="putative dimer interface (open form) [polypeptide
                     binding]"
                     /db_xref="CDD:380594"
     Region          554..794
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Region          <803..848
                     /region_name="HNOBA"
                     /note="Heme NO binding associated; pfam07701"
                     /db_xref="CDD:462234"
     Region          828..1020
                     /region_name="CYCc"
                     /note="Adenylyl- / guanylyl cyclase, catalytic domain;
                     smart00044"
                     /db_xref="CDD:214485"
     Site            order(866,868..873,908,910..912,915,980..982,986..987,
                     990..991,1029)
                     /site_type="active"
                     /note="nucleotidyl binding site [active]"
                     /db_xref="CDD:143636"
     Site            order(868,912)
                     /site_type="metal-binding"
                     /note="metal binding site [ion binding]"
                     /db_xref="CDD:143636"
     Site            order(873,885,888..889,892,896,908..909,968,971,981..984,
                     987,1029)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:143636"
     CDS             1..1103
                     /gene="GUCY2F"
                     /coded_by="XM_054056877.1:553..3864"
                     /db_xref="GeneID:104064132"
ORIGIN      
        1 msfpllcphs lfwvlsrham lhrfntgnsf ktfvkallwl lfgiillcsp ahcsvfkigl
       61 vgpwncdpff skafphvaar lavgriskdp slnlghrldy vvlqeecets aalvkfidfg
      121 krssafigpl npgfcevatf lgenwnkaif swmcinykld ssihhptfar tlpsptrvlf
      181 timkyfnwah vgiiasnedi wmdtanklas alrnqglpvg ivtsmrkgek giedtwneik
      241 avhglriill cmhsvliggk eqatlltkal emgladgryv fvpydtllys lpyqnssfnv
      301 fdndnklqea ydavltitla sgertfydaf reakesgeii gdleatqvsp lfgtiydaiy
      361 fmamaidsal rkgarvsgan iakhtknfsf pgfshwvetd scgkglsnyv ildtdgcgnq
      421 lfpthllnms sdavkslgra ihfpsgappk pdsscwfdpd vlcnggiept vvilgvmlif
      481 alllfaagla slirhsilns qlfrgpnkii mtlddlifin pelykkrltl dsltdatsva
      541 adgrslksvt rslslkstda thetsnvaly egdwvwlkkf etgavhklrq sstsilrkmk
      601 dlrhenvnlf lgffsdcgif aivteycsrg sledllrned mkldwmfkss lvmdlikgir
      661 ylhhrdlahg rlksrncvvd grfvlkitdy gynelleaqk cpyiqpppee llwtapellr
      721 dpdmrrkgtf kgdiysfaii lqevvvrgpp ycmsdlsaee iikkvkkppp lcrpnivpel
      781 apleciqfkt inkgkktnii dsmlrmleqy ssnledlire rteelevekq ktekllsqml
      841 ppsvaealkt ggtvepeyfd qvtiyfsdiv gfttisalse pievvdllnd lytlfdavlg
      901 nhdvykveti gdaymvasgl pkrngnkhaa eianmsldil ssvgtfkmrh mpeiplkiri
      961 glhtgpcvag vvgltmpryc lfgdtvntas rmestglpyr ihvsqstvdi lrslnegyei
     1021 iprgktelkg kgvedtywlv gkkgflkplp kppdtksghn wpdmlsrklr svlkgtkrtl
     1081 tkatfkelgs mkeaeisiee dei
//
LOCUS       XP_053912853            1066 aa            linear   VRT 09-MAR-2023
DEFINITION  retinal guanylyl cyclase 2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053912853
VERSION     XP_053912853.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056878.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1066
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1066
                     /product="retinal guanylyl cyclase 2 isoform X4"
                     /calculated_mol_wt=118976
     Region          57..438
                     /region_name="PBP1_sensory_GC_DEF-like"
                     /note="ligand-binding domain of membrane guanylyl cyclases
                     (GC-D, GC-E, and GC-F) that are specifically expressed in
                     sensory tissues; cd06371"
                     /db_xref="CDD:380594"
     Site            order(105,130..131)
                     /site_type="other"
                     /note="putative Cl binding site [ion binding]"
                     /db_xref="CDD:380594"
     Site            order(114,118,136,140,145,202..203,206,209)
                     /site_type="other"
                     /note="putative dimer interface (closed form) [polypeptide
                     binding]"
                     /db_xref="CDD:380594"
     Site            order(136,140,202..203,206,209..210,221)
                     /site_type="other"
                     /note="putative ligand binding site [chemical binding]"
                     /db_xref="CDD:380594"
     Site            order(239..240,264,271)
                     /site_type="other"
                     /note="putative dimer interface (open form) [polypeptide
                     binding]"
                     /db_xref="CDD:380594"
     Region          554..757
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Region          <766..811
                     /region_name="HNOBA"
                     /note="Heme NO binding associated; pfam07701"
                     /db_xref="CDD:462234"
     Region          791..983
                     /region_name="CYCc"
                     /note="Adenylyl- / guanylyl cyclase, catalytic domain;
                     smart00044"
                     /db_xref="CDD:214485"
     Site            order(829,831..836,871,873..875,878,943..945,949..950,
                     953..954,992)
                     /site_type="active"
                     /note="nucleotidyl binding site [active]"
                     /db_xref="CDD:143636"
     Site            order(831,875)
                     /site_type="metal-binding"
                     /note="metal binding site [ion binding]"
                     /db_xref="CDD:143636"
     Site            order(836,848,851..852,855,859,871..872,931,934,944..947,
                     950,992)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:143636"
     CDS             1..1066
                     /gene="GUCY2F"
                     /coded_by="XM_054056878.1:553..3753"
                     /db_xref="GeneID:104064132"
ORIGIN      
        1 msfpllcphs lfwvlsrham lhrfntgnsf ktfvkallwl lfgiillcsp ahcsvfkigl
       61 vgpwncdpff skafphvaar lavgriskdp slnlghrldy vvlqeecets aalvkfidfg
      121 krssafigpl npgfcevatf lgenwnkaif swmcinykld ssihhptfar tlpsptrvlf
      181 timkyfnwah vgiiasnedi wmdtanklas alrnqglpvg ivtsmrkgek giedtwneik
      241 avhglriill cmhsvliggk eqatlltkal emgladgryv fvpydtllys lpyqnssfnv
      301 fdndnklqea ydavltitla sgertfydaf reakesgeii gdleatqvsp lfgtiydaiy
      361 fmamaidsal rkgarvsgan iakhtknfsf pgfshwvetd scgkglsnyv ildtdgcgnq
      421 lfpthllnms sdavkslgra ihfpsgappk pdsscwfdpd vlcnggiept vvilgvmlif
      481 alllfaagla slirhsilns qlfrgpnkii mtlddlifin pelykkrltl dsltdatsva
      541 adgrslksvt rslslkstda thetsnvaly egdwvwlkkf etgavhklrq sstsilrkgi
      601 rylhhrdlah grlksrncvv dgrfvlkitd ygynelleaq kcpyiqpppe ellwtapell
      661 rdpdmrrkgt fkgdiysfai ilqevvvrgp pycmsdlsae eiikkvkkpp plcrpnivpe
      721 lapleciqvm kqcwgeaper rptfeevfyk fktinkgkkt niidsmlrml eqyssnledl
      781 irerteelev ekqkteklls qmlppsvaea lktggtvepe yfdqvtiyfs divgfttisa
      841 lsepievvdl lndlytlfda vlgnhdvykv etigdaymva sglpkrngnk haaeianmsl
      901 dilssvgtfk mrhmpeiplk iriglhtgpc vagvvgltmp ryclfgdtvn tasrmestgl
      961 pyrihvsqst vdilrslneg yeiiprgkte lkgkgvedty wlvgkkgflk plpkppdtks
     1021 ghnwpdmlsr klrsvlkgtk rtltkatfke lgsmkeaeis ieedei
//
LOCUS       XP_053912854            4694 aa            linear   VRT 09-MAR-2023
DEFINITION  sacsin isoform X1 [Cuculus canorus].
ACCESSION   XP_053912854
VERSION     XP_053912854.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056879.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4694
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..4694
                     /product="sacsin isoform X1"
                     /calculated_mol_wt=532299
     Region          113..184
                     /region_name="Ubl1_cv_Nsp3_N-like"
                     /note="first ubiquitin-like (Ubl) domain located at the
                     N-terminus of coronavirus SARS-CoV non-structural protein
                     3 (Nsp3) and related proteins; cl28922"
                     /db_xref="CDD:475130"
     Region          <4438..>4473
                     /region_name="DnaJ"
                     /note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
                     protein 40) proteins are highly conserved and play crucial
                     roles in protein translation, folding, unfolding,
                     translocation, and degradation. They act primarily by
                     stimulating the ATPase activity of Hsp70s; cl02542"
                     /db_xref="CDD:413365"
     Region          4566..4682
                     /region_name="HEPN"
                     /note="Higher Eukarytoes and Prokaryotes
                     Nucleotide-binding domain; smart00748"
                     /db_xref="CDD:214800"
     CDS             1..4694
                     /gene="SACS"
                     /coded_by="XM_054056879.1:661..14745"
                     /db_xref="GeneID:104064151"
ORIGIN      
        1 mlvninfisc sfvcpawwcl gtvrdstapp cggrdagtsd pgcispappg ssiparaaga
       61 eqgtsaplpr grpscfqggf ptrcrllcfl flrgaelgpl pfpggalsga egmlarvtvl
      121 hdclgcrtfe lppgaavaav karieeeagl praeqrlwlg gtqlsdgiki adlqksqnqv
      181 flklqskglk gggrfgqttp plvdflkdil rrypeggqil keliqnaeda gatevrflyd
      241 etqygtetlw skdmaqyqgp afyayndaif tpedwhgiqe iarsrkkddp lkvgrfgigf
      301 nsvyhitdvp sifsgdqigm ldphqtlfgp hesgqcwnlk edskeinelt dqfapfigvf
      361 gstketfkng nfpgtffrfp lrlqpsqlss nvydkqkvle lfesfradad tvllflksvq
      421 dvslhvread gnerlifrvt asenkalkhe rpnsikilgt aisqyckgvp snsitcvtyh
      481 vnivvedesv kdaqktswlv cncvggrgmc teldcladdl kfvptigiam slstngeekg
      541 avadfsgraf cflplppgee sktglpvhvs gffgltdnrr sikwreldqw rdpaalwndl
      601 lvvnvvpkay ttlileaikr meteknsdfp lsaeriyrlw pdeskirvpw kpivvplfke
      661 llqhtviysm snqwikveqv hfsemdesle ytqsvlnylq nsgkqiakvp aniasavhvt
      721 istakavkkv tpavvrqvlr ksghsgpaee klhllefvls dgvyseligl ellplqngnf
      781 ipfsssvseq dvvyitseey prslfpgleg kllsddlkpe ilaalkeaak sraqqllwgf
      841 sgrpctqlql lnperfarli kevmnstwpd rdmvvrwhpg ledknhppvs wlkmvwknly
      901 ihfsddlsaf ddmplipktl ledtqtsvel vrfrnpspii ledesetqlp ehladvvhkv
      961 ggvvlkkldi siqhplikky vhpplpsavl qimekmslqk lcsqvasfps tqkdalrafl
     1021 asltdaseke rkiiqellif kkmgkssees dpvfttlkgs rvlhhtakip pglrfsvpli
     1081 dgsdeatirl anllkieqlk stdclkfviq dirsdfysyd ettqimqwvl enltflknen
     1141 advidwlisl kfikisqeki msanelfdpe vellqnlfyt eeeicfppvi ftssdilhsl
     1201 rqiglknean leesdimrva nkieslhans dtdhdllfrk artllmilnk nhtllhsset
     1261 kaalkkikwi packerppny pgslvwkgdh cnlcsppemc dishailvgs svplvenvvl
     1321 diekalgipt kpsikavlkh fkvvvdwhss ktfsdedyyq fqhilleiyg fmhdhleegk
     1381 eafkalkfpw vwtgktfcsl aqaviksvpd ldlqpylhyv pktmakfhql ficcgsieql
     1441 tpdhvsmviq kiylkseqsl teqeskqnlh imlsiirwly snqipaslht pmplysgklp
     1501 yklamrpihe ccycdikvdd lndlledsve piilvhedip mktaewlnvp clstrlinpe
     1561 nmgfeqsgqr epltvrikni leeypsisdi fkellqnadd anatecnfli dmrrnmdire
     1621 nlldpgmaac hgpalwsfnn sefsdsdfln itrlgeslkr seadkvgkfg lgfnsvyhit
     1681 dvpiilsref mimfdpnvnh iskhirdksn pgikinwskq qkrlrkfpnq fkpfigvfgc
     1741 qlpltvespy sykgtlfrls frtqqeakvs evssacynta diyslvdefs icghrliifa
     1801 qsvnsmvlky lkieaedpgv aqdvvtikkn lcsskaltap nvsvlkeaak lmkvcssssk
     1861 klptetpkss cilqivveef hhvfrriadl qsplfrgmed dpasffemak sgqvkrsade
     1921 lpqktvdstt wlicscmdig dalkfslhes grrlglvpcg gvgvllsetq dqkwmvkpnc
     1981 nsigevfcyl plriktglpl hingcfavts nrkeiwktdt kgrwntvfmr hvivkayiea
     2041 lcvlrdmain gelvgysycs vwpdpdsvhd dfsvicqgfy ediahmkgke gikvfsdgfs
     2101 wvsmknvrfl ddsilkrpdv gpsafkiflk ylkktgsksl cavdlpswvk tgfeeagcky
     2161 illentfsek qffsevffpn iqeidaelrd plmcyvlnek veefsgilrv tpcipcsldg
     2221 hplvtpsrli hpegrvakly daedgrfpfg ttqdylnpvi lvklvqlgma kddilwedli
     2281 ervesvaein kidhaaaclr ssiilslide klksrdprak efvarcqtip flpflskpag
     2341 fslhwkgsdf qleamfsatd lftadhqdiv cliqpilnen spsfkgcgvl slavkeflgl
     2401 lkkpavdlvi nqleevaksf dgitlyqeni tnacykylhe amlqnestka miieqltncs
     2461 filvenvyvd ptkvsfhlnf eaapylyqlp nkyknsfrel fesvgvrqaf tvedfagvle
     2521 lvnqergtkq ltedsfqlcr riisegiwgl irekkqefce kkygeillpd trlallpaks
     2581 lcyndcpwik vkdttvkych gdiprevavk lgaipkrhka leryasnicf ttlgtefgqk
     2641 ekltsriksi lnaypsekem lkellqnadd akateicfvf dprqhpadri fdekwaplqg
     2701 palcvynnqp fteddirgiq nlgkgtkvgn pcktgqygig fnsvyhitdc psflsgndil
     2761 cifdpharya pgststspgr mfrdldadfr tqfsdvldly lgnhfkldnc tmfrfplrng
     2821 emakvseiss vpcsdrmvqn lldklrtdga ellmflnhme kisiceiekt tgalnvlysv
     2881 qgkitdgdrl krkqfhasvi dsvtkkkqls eipvqqityt mdtedsegnl ttwlicnrsg
     2941 fsamekvsks vvsahknedi tlfprggvaa cithnykkph rafcflplsl etglpfhvng
     3001 hfaldsarrn lwrddngvgv rsdwnsslmt aliapayvel liqlkkryfp gtdptvsvlq
     3061 ntpihvvkdt lkkflsffpv nrldiqpdwy clvkavysci yedlkrllpv mrapnidgsd
     3121 lhsaviitwv nmstankgrp ffdnllqdel qhlknteyni ttrktvaenv yrlkhlllei
     3181 gfnlvyncde tanlyhclvd adipvtyvtp advrlflmtf slpdsnchig klpcrlqqtn
     3241 lklfhslkll vdycfkdaee neiqieglpl litldnvlqi fdskrpkflt tyhelipsrk
     3301 dlfmntlylr ynsillgsev akvfdirsfa ellssvlpre yktrncmkwk enfaseswlk
     3361 nawhfitesi nikeeqedmq akfddvvdtl kdwallpgvr ftvsanhivv pecdvllpls
     3421 imhiavfpna qndkvfhvlm ktgciqlaln kicskdstlv pllsgctani dnpssilkai
     3481 qymvqtstfr teklaesdfe allmyfncnl chltsqddik ilkslpcyka isgryisisk
     3541 ygtcyvltkn ipsvevdrwt hstssaflee kvhlkdlytv lgcvsvddle vylkhllpki
     3601 eslsydakle hliylknrlt sieetsemke qlfeklesil iihdasnrlk pakyfydrtv
     3661 kvfevmlpek ffipqdffkk leqltkpknq aaflpswvsf lrhiglkfii sqqqllqfak
     3721 eismranten wsketlqntv dvllhhifqe rtdllsgnfl kelslipflc perapaefvr
     3781 fhpqyqeing tlplirfnga qvnpkfkqtd vlqllwtscp ilpekatpls ikeqegsslg
     3841 aqeqleqvlt mlnvnldppl dkvinncrni cnittldedm vktrakvlrs iyeflstekr
     3901 efrfqlrgvs fvmveegwkl lkpeevvinl eyesdfkpyl yklplelgtf hqlfkhlgte
     3961 diistkqyve vlgrifksse gkqldpnemr tvkrvvsglf kslqndsvkv rnelenmrdf
     4021 vlylpsqdgr lvkssilvfd daphyksriq gnigvqmlvd lsqcylgkdh gfhtklimlf
     4081 pqklrprlls sileeqldee spkicqfgal cslqgrlqll lsseqfitgl irimkhendn
     4141 aflaneekav rlckalregl kvscfeklqt tlrvkgfapi phsksetfaf lkrygnavil
     4201 lyiqhsdskd infllalamt lksatdnlis dtsyliamlg cndiyrigek ldslgvkyds
     4261 sepsklelpt pgtpipaeih ytllmdpmnv fypgeyvgyl vdaeggdiyg syqptytyai
     4321 ivqeveredd eshsflgkiy qidigyseyk ivssldlykf srpeessqsr dsapstptsp
     4381 tefpahgprt ipplftgres hktmsskhhs pkkiksnslp eilrevtsvi eqawklpese
     4441 rkkiirrlyl kwhpdknadn ldianevfkh lqneinrlek qafmdqnmdr asrrpfsssa
     4501 srfqsdkfsf qrfytswnqe atshkserqh ykekcpssmg pshsqrffvp ptfrsvgnpv
     4561 earrwlrqar anfsaarndl hknanewvcf kcylstklal iaadyavkgk sdkdvkpaal
     4621 aqkieeysqq leglandvqt leaygvdslk trypdllpfp qipndrftse vamrvmecta
     4681 ciiiklenfi qqkv
//
LOCUS       XP_053912855            4685 aa            linear   VRT 09-MAR-2023
DEFINITION  sacsin isoform X2 [Cuculus canorus].
ACCESSION   XP_053912855
VERSION     XP_053912855.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056880.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4685
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..4685
                     /product="sacsin isoform X2"
                     /calculated_mol_wt=531267
     Region          113..184
                     /region_name="Ubl1_cv_Nsp3_N-like"
                     /note="first ubiquitin-like (Ubl) domain located at the
                     N-terminus of coronavirus SARS-CoV non-structural protein
                     3 (Nsp3) and related proteins; cl28922"
                     /db_xref="CDD:475130"
     Region          <4429..>4464
                     /region_name="DnaJ"
                     /note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
                     protein 40) proteins are highly conserved and play crucial
                     roles in protein translation, folding, unfolding,
                     translocation, and degradation. They act primarily by
                     stimulating the ATPase activity of Hsp70s; cl02542"
                     /db_xref="CDD:413365"
     Region          4557..4673
                     /region_name="HEPN"
                     /note="Higher Eukarytoes and Prokaryotes
                     Nucleotide-binding domain; smart00748"
                     /db_xref="CDD:214800"
     CDS             1..4685
                     /gene="SACS"
                     /coded_by="XM_054056880.1:661..14718"
                     /db_xref="GeneID:104064151"
ORIGIN      
        1 mlvninfisc sfvcpawwcl gtvrdstapp cggrdagtsd pgcispappg ssiparaaga
       61 eqgtsaplpr grpscfqggf ptrcrllcfl flrgaelgpl pfpggalsga egmlarvtvl
      121 hdclgcrtfe lppgaavaav karieeeagl praeqrlwlg gtqlsdgiki adlqksqnqv
      181 flklqskglk gggrfgqttp plvdflkdil rrypeggqil keliqnaeda gatevrflyd
      241 etqygtetlw skdmaqyqgp afyayndaif tpedwhgiqe iarsrkkddp lkvgrfgigf
      301 nsvyhitdvp sifsgdqigm ldphqtlfgp hesgqcwnlk edskeinelt dqfapfigvf
      361 gstketfkng nfpgtffrfp lrlqpsqlss nvydkqkvle lfesfradad tvllflksvq
      421 dvslhvread gnerlifrvt asenkalkhe rpnsikilgt aisqyckgvp snsitcvtyh
      481 vnivvedesv kdaqktswlv cncvggrgmc teldcladdl kfvptigiam slstngeekg
      541 avadfsgraf cflplppgee sktglpvhvs gffgltdnrr sikwreldqw rdpaalwndl
      601 lvvnvvpkay ttlileaikr meteknsdfp lsaeriyrlw pdeskirvpw kpivvplfke
      661 llqhtviysm snqwikveqv hfsemdesle ytqsvlnylq nsgkqiakvp aniasavhvt
      721 istakavkkv tpavvrqvlr ksghsgpaee klhllefvls dgvyseligl ellplqngnf
      781 ipfsssvseq dvvyitseey prslfpgleg kllsddlkpe ilaalkeaak srgrpctqlq
      841 llnperfarl ikevmnstwp drdmvvrwhp gledknhppv swlkmvwknl yihfsddlsa
      901 fddmplipkt lledtqtsve lvrfrnpspi iledesetql pehladvvhk vggvvlkkld
      961 isiqhplikk yvhpplpsav lqimekmslq klcsqvasfp stqkdalraf lasltdasek
     1021 erkiiqelli fkkmgkssee sdpvfttlkg srvlhhtaki ppglrfsvpl idgsdeatir
     1081 lanllkieql kstdclkfvi qdirsdfysy dettqimqwv lenltflkne nadvidwlis
     1141 lkfikisqek imsanelfdp evellqnlfy teeeicfppv iftssdilhs lrqiglknea
     1201 nleesdimrv ankieslhan sdtdhdllfr kartllmiln knhtllhsse tkaalkkikw
     1261 ipackerppn ypgslvwkgd hcnlcsppem cdishailvg ssvplvenvv ldiekalgip
     1321 tkpsikavlk hfkvvvdwhs sktfsdedyy qfqhilleiy gfmhdhleeg keafkalkfp
     1381 wvwtgktfcs laqaviksvp dldlqpylhy vpktmakfhq lficcgsieq ltpdhvsmvi
     1441 qkiylkseqs lteqeskqnl himlsiirwl ysnqipaslh tpmplysgkl pyklamrpih
     1501 eccycdikvd dlndlledsv epiilvhedi pmktaewlnv pclstrlinp enmgfeqsgq
     1561 repltvrikn ileeypsisd ifkellqnad danatecnfl idmrrnmdir enlldpgmaa
     1621 chgpalwsfn nsefsdsdfl nitrlgeslk rseadkvgkf glgfnsvyhi tdvpiilsre
     1681 fmimfdpnvn hiskhirdks npgikinwsk qqkrlrkfpn qfkpfigvfg cqlpltvesp
     1741 ysykgtlfrl sfrtqqeakv sevssacynt adiyslvdef sicghrliif aqsvnsmvlk
     1801 ylkieaedpg vaqdvvtikk nlcsskalta pnvsvlkeaa klmkvcssss kklptetpks
     1861 scilqivvee fhhvfrriad lqsplfrgme ddpasffema ksgqvkrsad elpqktvdst
     1921 twlicscmdi gdalkfslhe sgrrlglvpc ggvgvllset qdqkwmvkpn cnsigevfcy
     1981 lplriktglp lhingcfavt snrkeiwktd tkgrwntvfm rhvivkayie alcvlrdmai
     2041 ngelvgysyc svwpdpdsvh ddfsvicqgf yediahmkgk egikvfsdgf swvsmknvrf
     2101 lddsilkrpd vgpsafkifl kylkktgsks lcavdlpswv ktgfeeagck yillentfse
     2161 kqffsevffp niqeidaelr dplmcyvlne kveefsgilr vtpcipcsld ghplvtpsrl
     2221 ihpegrvakl ydaedgrfpf gttqdylnpv ilvklvqlgm akddilwedl iervesvaei
     2281 nkidhaaacl rssiilslid eklksrdpra kefvarcqti pflpflskpa gfslhwkgsd
     2341 fqleamfsat dlftadhqdi vcliqpilne nspsfkgcgv lslavkeflg llkkpavdlv
     2401 inqleevaks fdgitlyqen itnacykylh eamlqnestk amiieqltnc sfilvenvyv
     2461 dptkvsfhln feaapylyql pnkyknsfre lfesvgvrqa ftvedfagvl elvnqergtk
     2521 qltedsfqlc rriisegiwg lirekkqefc ekkygeillp dtrlallpak slcyndcpwi
     2581 kvkdttvkyc hgdiprevav klgaipkrhk aleryasnic fttlgtefgq kekltsriks
     2641 ilnaypseke mlkellqnad dakateicfv fdprqhpadr ifdekwaplq gpalcvynnq
     2701 pfteddirgi qnlgkgtkvg npcktgqygi gfnsvyhitd cpsflsgndi lcifdphary
     2761 apgststspg rmfrdldadf rtqfsdvldl ylgnhfkldn ctmfrfplrn gemakvseis
     2821 svpcsdrmvq nlldklrtdg aellmflnhm ekisiceiek ttgalnvlys vqgkitdgdr
     2881 lkrkqfhasv idsvtkkkql seipvqqity tmdtedsegn lttwlicnrs gfsamekvsk
     2941 svvsahkned itlfprggva acithnykkp hrafcflpls letglpfhvn ghfaldsarr
     3001 nlwrddngvg vrsdwnsslm taliapayve lliqlkkryf pgtdptvsvl qntpihvvkd
     3061 tlkkflsffp vnrldiqpdw yclvkavysc iyedlkrllp vmrapnidgs dlhsaviitw
     3121 vnmstankgr pffdnllqde lqhlknteyn ittrktvaen vyrlkhllle igfnlvyncd
     3181 etanlyhclv dadipvtyvt padvrlflmt fslpdsnchi gklpcrlqqt nlklfhslkl
     3241 lvdycfkdae eneiqieglp llitldnvlq ifdskrpkfl ttyhelipsr kdlfmntlyl
     3301 rynsillgse vakvfdirsf aellssvlpr eyktrncmkw kenfaseswl knawhfites
     3361 inikeeqedm qakfddvvdt lkdwallpgv rftvsanhiv vpecdvllpl simhiavfpn
     3421 aqndkvfhvl mktgciqlal nkicskdstl vpllsgctan idnpssilka iqymvqtstf
     3481 rteklaesdf eallmyfncn lchltsqddi kilkslpcyk aisgryisis kygtcyvltk
     3541 nipsvevdrw thstssafle ekvhlkdlyt vlgcvsvddl evylkhllpk ieslsydakl
     3601 ehliylknrl tsieetsemk eqlfeklesi liihdasnrl kpakyfydrt vkvfevmlpe
     3661 kffipqdffk kleqltkpkn qaaflpswvs flrhiglkfi isqqqllqfa keismrante
     3721 nwsketlqnt vdvllhhifq ertdllsgnf lkelslipfl cperapaefv rfhpqyqein
     3781 gtlplirfng aqvnpkfkqt dvlqllwtsc pilpekatpl sikeqegssl gaqeqleqvl
     3841 tmlnvnldpp ldkvinncrn icnittlded mvktrakvlr siyeflstek refrfqlrgv
     3901 sfvmveegwk llkpeevvin leyesdfkpy lyklplelgt fhqlfkhlgt ediistkqyv
     3961 evlgrifkss egkqldpnem rtvkrvvsgl fkslqndsvk vrnelenmrd fvlylpsqdg
     4021 rlvkssilvf ddaphyksri qgnigvqmlv dlsqcylgkd hgfhtkliml fpqklrprll
     4081 ssileeqlde espkicqfga lcslqgrlql llsseqfitg lirimkhend naflaneeka
     4141 vrlckalreg lkvscfeklq ttlrvkgfap iphsksetfa flkrygnavi llyiqhsdsk
     4201 dinfllalam tlksatdnli sdtsyliaml gcndiyrige kldslgvkyd ssepsklelp
     4261 tpgtpipaei hytllmdpmn vfypgeyvgy lvdaeggdiy gsyqptytya iivqevered
     4321 deshsflgki yqidigysey kivssldlyk fsrpeessqs rdsapstpts ptefpahgpr
     4381 tipplftgre shktmsskhh spkkiksnsl peilrevtsv ieqawklpes erkkiirrly
     4441 lkwhpdknad nldianevfk hlqneinrle kqafmdqnmd rasrrpfsss asrfqsdkfs
     4501 fqrfytswnq eatshkserq hykekcpssm gpshsqrffv pptfrsvgnp vearrwlrqa
     4561 ranfsaarnd lhknanewvc fkcylstkla liaadyavkg ksdkdvkpaa laqkieeysq
     4621 qleglandvq tleaygvdsl ktrypdllpf pqipndrfts evamrvmect aciiiklenf
     4681 iqqkv
//
LOCUS       XP_053912856             291 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-sarcoglycan [Cuculus canorus].
ACCESSION   XP_053912856
VERSION     XP_053912856.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056881.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..291
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..291
                     /product="gamma-sarcoglycan"
                     /calculated_mol_wt=32244
     Region          25..280
                     /region_name="Sarcoglycan_1"
                     /note="Sarcoglycan complex subunit protein; pfam04790"
                     /db_xref="CDD:461428"
     CDS             1..291
                     /gene="SGCG"
                     /coded_by="XM_054056881.1:253..1128"
                     /db_xref="GeneID:104064150"
ORIGIN      
        1 mvreqytttt pgtslerpkn eyvykigiyg wrkrclylfv lllliilvvn fsltiwilkv
       61 mwfsptgmgh lrvtkeglrl egeseflfpl yakeihsrvd sslllqsthn vtvnarnsng
      121 evtgrlnvgp kmvefhgqqf qinskdgkpl ftvdenevvi gtdklrvtgp egalfehsve
      181 tplvkaeafk qlrlesptrs lsmdaprgin iraqagniea lsqmdiklhs sdgvllldae
      241 tvrlpklpeg trggsavsqg lyeicvcpdg klylsvagvg stcqeysrvc q
//
LOCUS       XP_053912857             291 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-sarcoglycan [Cuculus canorus].
ACCESSION   XP_053912857
VERSION     XP_053912857.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056882.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..291
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..291
                     /product="gamma-sarcoglycan"
                     /calculated_mol_wt=32244
     Region          25..280
                     /region_name="Sarcoglycan_1"
                     /note="Sarcoglycan complex subunit protein; pfam04790"
                     /db_xref="CDD:461428"
     CDS             1..291
                     /gene="SGCG"
                     /coded_by="XM_054056882.1:336..1211"
                     /db_xref="GeneID:104064150"
ORIGIN      
        1 mvreqytttt pgtslerpkn eyvykigiyg wrkrclylfv lllliilvvn fsltiwilkv
       61 mwfsptgmgh lrvtkeglrl egeseflfpl yakeihsrvd sslllqsthn vtvnarnsng
      121 evtgrlnvgp kmvefhgqqf qinskdgkpl ftvdenevvi gtdklrvtgp egalfehsve
      181 tplvkaeafk qlrlesptrs lsmdaprgin iraqagniea lsqmdiklhs sdgvllldae
      241 tvrlpklpeg trggsavsqg lyeicvcpdg klylsvagvg stcqeysrvc q
//
LOCUS       XP_053912859             291 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-sarcoglycan [Cuculus canorus].
ACCESSION   XP_053912859
VERSION     XP_053912859.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056884.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..291
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..291
                     /product="gamma-sarcoglycan"
                     /calculated_mol_wt=32244
     Region          25..280
                     /region_name="Sarcoglycan_1"
                     /note="Sarcoglycan complex subunit protein; pfam04790"
                     /db_xref="CDD:461428"
     CDS             1..291
                     /gene="SGCG"
                     /coded_by="XM_054056884.1:250..1125"
                     /db_xref="GeneID:104064150"
ORIGIN      
        1 mvreqytttt pgtslerpkn eyvykigiyg wrkrclylfv lllliilvvn fsltiwilkv
       61 mwfsptgmgh lrvtkeglrl egeseflfpl yakeihsrvd sslllqsthn vtvnarnsng
      121 evtgrlnvgp kmvefhgqqf qinskdgkpl ftvdenevvi gtdklrvtgp egalfehsve
      181 tplvkaeafk qlrlesptrs lsmdaprgin iraqagniea lsqmdiklhs sdgvllldae
      241 tvrlpklpeg trggsavsqg lyeicvcpdg klylsvagvg stcqeysrvc q
//
LOCUS       XP_053912860             291 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-sarcoglycan [Cuculus canorus].
ACCESSION   XP_053912860
VERSION     XP_053912860.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056885.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..291
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..291
                     /product="gamma-sarcoglycan"
                     /calculated_mol_wt=32244
     Region          25..280
                     /region_name="Sarcoglycan_1"
                     /note="Sarcoglycan complex subunit protein; pfam04790"
                     /db_xref="CDD:461428"
     CDS             1..291
                     /gene="SGCG"
                     /coded_by="XM_054056885.1:142..1017"
                     /db_xref="GeneID:104064150"
ORIGIN      
        1 mvreqytttt pgtslerpkn eyvykigiyg wrkrclylfv lllliilvvn fsltiwilkv
       61 mwfsptgmgh lrvtkeglrl egeseflfpl yakeihsrvd sslllqsthn vtvnarnsng
      121 evtgrlnvgp kmvefhgqqf qinskdgkpl ftvdenevvi gtdklrvtgp egalfehsve
      181 tplvkaeafk qlrlesptrs lsmdaprgin iraqagniea lsqmdiklhs sdgvllldae
      241 tvrlpklpeg trggsavsqg lyeicvcpdg klylsvagvg stcqeysrvc q
//
LOCUS       XP_053912861             291 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-sarcoglycan [Cuculus canorus].
ACCESSION   XP_053912861
VERSION     XP_053912861.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056886.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..291
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..291
                     /product="gamma-sarcoglycan"
                     /calculated_mol_wt=32244
     Region          25..280
                     /region_name="Sarcoglycan_1"
                     /note="Sarcoglycan complex subunit protein; pfam04790"
                     /db_xref="CDD:461428"
     CDS             1..291
                     /gene="SGCG"
                     /coded_by="XM_054056886.1:67..942"
                     /db_xref="GeneID:104064150"
ORIGIN      
        1 mvreqytttt pgtslerpkn eyvykigiyg wrkrclylfv lllliilvvn fsltiwilkv
       61 mwfsptgmgh lrvtkeglrl egeseflfpl yakeihsrvd sslllqsthn vtvnarnsng
      121 evtgrlnvgp kmvefhgqqf qinskdgkpl ftvdenevvi gtdklrvtgp egalfehsve
      181 tplvkaeafk qlrlesptrs lsmdaprgin iraqagniea lsqmdiklhs sdgvllldae
      241 tvrlpklpeg trggsavsqg lyeicvcpdg klylsvagvg stcqeysrvc q
//
LOCUS       XP_009564742             291 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-sarcoglycan [Cuculus canorus].
ACCESSION   XP_009564742
VERSION     XP_009564742.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566447.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..291
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..291
                     /product="gamma-sarcoglycan"
                     /calculated_mol_wt=32244
     Region          25..280
                     /region_name="Sarcoglycan_1"
                     /note="Sarcoglycan complex subunit protein; pfam04790"
                     /db_xref="CDD:461428"
     CDS             1..291
                     /gene="SGCG"
                     /coded_by="XM_009566447.2:72..947"
                     /db_xref="GeneID:104064150"
ORIGIN      
        1 mvreqytttt pgtslerpkn eyvykigiyg wrkrclylfv lllliilvvn fsltiwilkv
       61 mwfsptgmgh lrvtkeglrl egeseflfpl yakeihsrvd sslllqsthn vtvnarnsng
      121 evtgrlnvgp kmvefhgqqf qinskdgkpl ftvdenevvi gtdklrvtgp egalfehsve
      181 tplvkaeafk qlrlesptrs lsmdaprgin iraqagniea lsqmdiklhs sdgvllldae
      241 tvrlpklpeg trggsavsqg lyeicvcpdg klylsvagvg stcqeysrvc q
//
LOCUS       XP_053912862             355 aa            linear   VRT 09-MAR-2023
DEFINITION  OX-2 membrane glycoprotein isoform X1 [Cuculus canorus].
ACCESSION   XP_053912862
VERSION     XP_053912862.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056887.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..355
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..355
                     /product="OX-2 membrane glycoprotein isoform X1"
                     /calculated_mol_wt=38704
     Region          35..141
                     /region_name="IgV_1_MRC-OX-2_like"
                     /note="First immunoglobulin (Ig) variable (V) domain of
                     rat MRC OX-2 antigen, and similar domains; cd05846"
                     /db_xref="CDD:409433"
     Region          35..54
                     /region_name="FR1"
                     /note="FR1 [structural motif]"
                     /db_xref="CDD:409433"
     Region          35..38
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409433"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409433"
     Region          47..55
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409433"
     Region          55..61
                     /region_name="CDR1"
                     /note="CDR1 [structural motif]"
                     /db_xref="CDD:409433"
     Region          62..71
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409433"
     Region          63..69
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409433"
     Region          72..89
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409433"
     Region          72..80
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409433"
     Region          85..89
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409433"
     Region          95..125
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409433"
     Region          95..102
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409433"
     Region          105..111
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409433"
     Region          119..126
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409433"
     Region          126..132
                     /region_name="CDR3"
                     /note="CDR3 [structural motif]"
                     /db_xref="CDD:409433"
     Region          132..141
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409433"
     Region          133..141
                     /region_name="FR4"
                     /note="FR4 [structural motif]"
                     /db_xref="CDD:409433"
     Region          153..241
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          167..171
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409384"
     Region          180..184
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409384"
     Region          209..213
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409384"
     Region          223..228
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409384"
     Region          238..241
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409384"
     CDS             1..355
                     /gene="LOC104056007"
                     /coded_by="XM_054056887.1:50..1117"
                     /db_xref="GeneID:104056007"
ORIGIN      
        1 mdqsfaclae gaakmmvacl llssiwtias gsvkvmhrkv qsvqvggnvt iscqsvmked
       61 vlqvtwqket dgpedniaty skmngqkiak gyvghvsfah selqasaisl rgvtlqdegc
      121 ykcifntfpl gavtgrtcln vyvisnpkve aklisspdkp ensekmvgms csatgkpapk
      181 itwhlprilq qkpreyhirl snqtvtvisn fthahskilq eypitcviqh pslnrtlvlp
      241 idslaqgpdr smapaiavvl gvlvpltsll flvclliccl rhlydpernl twpcwvlhac
      301 tkakkggqhr tagrwastvp pspgvtlssw ppyvcerets cssilgfqqt scdll
//
LOCUS       XP_053912863             314 aa            linear   VRT 09-MAR-2023
DEFINITION  OX-2 membrane glycoprotein isoform X2 [Cuculus canorus].
ACCESSION   XP_053912863
VERSION     XP_053912863.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056888.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..314
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..314
                     /product="OX-2 membrane glycoprotein isoform X2"
                     /calculated_mol_wt=34340
     Region          35..141
                     /region_name="IgV_1_MRC-OX-2_like"
                     /note="First immunoglobulin (Ig) variable (V) domain of
                     rat MRC OX-2 antigen, and similar domains; cd05846"
                     /db_xref="CDD:409433"
     Region          35..54
                     /region_name="FR1"
                     /note="FR1 [structural motif]"
                     /db_xref="CDD:409433"
     Region          35..38
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409433"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409433"
     Region          47..55
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409433"
     Region          55..61
                     /region_name="CDR1"
                     /note="CDR1 [structural motif]"
                     /db_xref="CDD:409433"
     Region          62..71
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409433"
     Region          63..69
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409433"
     Region          72..89
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409433"
     Region          72..80
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409433"
     Region          85..89
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409433"
     Region          95..125
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409433"
     Region          95..102
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409433"
     Region          105..111
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409433"
     Region          119..126
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409433"
     Region          126..132
                     /region_name="CDR3"
                     /note="CDR3 [structural motif]"
                     /db_xref="CDD:409433"
     Region          132..141
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409433"
     Region          133..141
                     /region_name="FR4"
                     /note="FR4 [structural motif]"
                     /db_xref="CDD:409433"
     Region          153..241
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          167..171
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409384"
     Region          180..184
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409384"
     Region          209..213
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409384"
     Region          223..228
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409384"
     Region          238..241
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409384"
     CDS             1..314
                     /gene="LOC104056007"
                     /coded_by="XM_054056888.1:50..994"
                     /db_xref="GeneID:104056007"
ORIGIN      
        1 mdqsfaclae gaakmmvacl llssiwtias gsvkvmhrkv qsvqvggnvt iscqsvmked
       61 vlqvtwqket dgpedniaty skmngqkiak gyvghvsfah selqasaisl rgvtlqdegc
      121 ykcifntfpl gavtgrtcln vyvisnpkve aklisspdkp ensekmvgms csatgkpapk
      181 itwhlprilq qkpreyhirl snqtvtvisn fthahskilq eypitcviqh pslnrtlvlp
      241 idslaqgpdr smapaiavvl gvlvpltsll flvclliccl rhlydpernl twpcwhhasr
      301 pklepaegva rgkq
//
LOCUS       XP_053912864             314 aa            linear   VRT 09-MAR-2023
DEFINITION  OX-2 membrane glycoprotein isoform X2 [Cuculus canorus].
ACCESSION   XP_053912864
VERSION     XP_053912864.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056889.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..314
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..314
                     /product="OX-2 membrane glycoprotein isoform X2"
                     /calculated_mol_wt=34340
     Region          35..141
                     /region_name="IgV_1_MRC-OX-2_like"
                     /note="First immunoglobulin (Ig) variable (V) domain of
                     rat MRC OX-2 antigen, and similar domains; cd05846"
                     /db_xref="CDD:409433"
     Region          35..54
                     /region_name="FR1"
                     /note="FR1 [structural motif]"
                     /db_xref="CDD:409433"
     Region          35..38
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409433"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409433"
     Region          47..55
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409433"
     Region          55..61
                     /region_name="CDR1"
                     /note="CDR1 [structural motif]"
                     /db_xref="CDD:409433"
     Region          62..71
                     /region_name="FR2"
                     /note="FR2 [structural motif]"
                     /db_xref="CDD:409433"
     Region          63..69
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409433"
     Region          72..89
                     /region_name="CDR2"
                     /note="CDR2 [structural motif]"
                     /db_xref="CDD:409433"
     Region          72..80
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409433"
     Region          85..89
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409433"
     Region          95..125
                     /region_name="FR3"
                     /note="FR3 [structural motif]"
                     /db_xref="CDD:409433"
     Region          95..102
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409433"
     Region          105..111
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409433"
     Region          119..126
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409433"
     Region          126..132
                     /region_name="CDR3"
                     /note="CDR3 [structural motif]"
                     /db_xref="CDD:409433"
     Region          132..141
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409433"
     Region          133..141
                     /region_name="FR4"
                     /note="FR4 [structural motif]"
                     /db_xref="CDD:409433"
     Region          153..241
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          167..171
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409384"
     Region          180..184
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409384"
     Region          209..213
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409384"
     Region          223..228
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409384"
     Region          238..241
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409384"
     CDS             1..314
                     /gene="LOC104056007"
                     /coded_by="XM_054056889.1:50..994"
                     /db_xref="GeneID:104056007"
ORIGIN      
        1 mdqsfaclae gaakmmvacl llssiwtias gsvkvmhrkv qsvqvggnvt iscqsvmked
       61 vlqvtwqket dgpedniaty skmngqkiak gyvghvsfah selqasaisl rgvtlqdegc
      121 ykcifntfpl gavtgrtcln vyvisnpkve aklisspdkp ensekmvgms csatgkpapk
      181 itwhlprilq qkpreyhirl snqtvtvisn fthahskilq eypitcviqh pslnrtlvlp
      241 idslaqgpdr smapaiavvl gvlvpltsll flvclliccl rhlydpernl twpcwhhasr
      301 pklepaegva rgkq
//
LOCUS       XP_053912865             280 aa            linear   VRT 09-MAR-2023
DEFINITION  nectin-1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912865
VERSION     XP_053912865.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056890.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..280
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..280
                     /product="nectin-1 isoform X1"
                     /calculated_mol_wt=30918
     Region          40..139
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          47..51
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409433"
     Region          61..65
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409433"
     Region          104..108
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409433"
     Region          118..123
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409433"
     Region          132..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409433"
     Region          <161..219
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409384"
     Region          201..205
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409384"
     Region          212..217
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409384"
     CDS             1..280
                     /gene="LOC104056008"
                     /coded_by="XM_054056890.1:24..866"
                     /db_xref="GeneID:104056008"
ORIGIN      
        1 mlfpllcwae icllllcggc qlvgpemglk eaaksesiia aalggeahly cnfslsvdvl
       61 qvtwhkrnes sfqniatysp hhgfrligsf qkkvrfngat lkataitpqn ltfedesyyr
      121 cifnvfplgs fskdiylniq tiseltveyd shtpsnglft avcsaigkpa pkiswlgere
      181 lnespeiqhi qnangtvtvm srltffanhh ralacfldhi qgrkmkvvyl ekgregrlyl
      241 ygkvqhavgs akekmcscgs gagvyiglai ffwkfrscag
//
LOCUS       XP_053912866             236 aa            linear   VRT 09-MAR-2023
DEFINITION  nectin-1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912866
VERSION     XP_053912866.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056891.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..236
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..236
                     /product="nectin-1 isoform X2"
                     /calculated_mol_wt=26232
     Region          40..139
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          47..51
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409433"
     Region          61..65
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409433"
     Region          104..108
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409433"
     Region          118..123
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409433"
     Region          132..135
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409433"
     Region          <161..219
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          172..176
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409384"
     Region          201..205
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409384"
     Region          212..217
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409384"
     CDS             1..236
                     /gene="LOC104056008"
                     /coded_by="XM_054056891.1:24..734"
                     /db_xref="GeneID:104056008"
ORIGIN      
        1 mlfpllcwae icllllcggc qlvgpemglk eaaksesiia aalggeahly cnfslsvdvl
       61 qvtwhkrnes sfqniatysp hhgfrligsf qkkvrfngat lkataitpqn ltfedesyyr
      121 cifnvfplgs fskdiylniq tiseltveyd shtpsnglft avcsaigkpa pkiswlgere
      181 lnespeiqhi qnangtvtvm srltffanhh ralacfldhi qgrkmkvvyl ekgred
//
LOCUS       XP_009554716             390 aa            linear   VRT 09-MAR-2023
DEFINITION  angiopoietin-related protein 5 [Cuculus canorus].
ACCESSION   XP_009554716
VERSION     XP_009554716.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556421.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554716.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..390
                     /product="angiopoietin-related protein 5"
                     /calculated_mol_wt=44369
     Region          148..383
                     /region_name="FReD"
                     /note="Fibrinogen-related domains (FReDs); C terminal
                     globular domain of fibrinogen. Fibrinogen is involved in
                     blood clotting, being activated by thrombin to assemble
                     into fibrin clots. The N-termini of 2 times 3 chains come
                     together to form a globular...; cd00087"
                     /db_xref="CDD:238040"
     Site            274
                     /site_type="other"
                     /note="gamma-gamma dimer interface [polypeptide binding]"
                     /db_xref="CDD:238040"
     Site            order(308,310,312)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238040"
     Site            order(326,330..331,340..341)
                     /site_type="active"
                     /note="polymerization pocket [active]"
                     /db_xref="CDD:238040"
     CDS             1..390
                     /gene="ANGPTL5"
                     /coded_by="XM_009556421.2:107..1279"
                     /db_xref="GeneID:104055312"
ORIGIN      
        1 mncfgvtsli clniflfswg etvinnvkpc ssqgtrnlga veeslkaeek nksadiskqn
       61 eqcvvpcdvq akilrgekhy mcrnlqnslv eyarstkkli rnmmddqqss ldylsnqvne
      121 lmnrllllnt eilrkhldsl pykavqshgl dctdikdtvg svsktptgly iihpegsnyp
      181 fevlcdmdfq gggwtviqkr tdgiipfqrt wseyldgfgd lsgefwlglr kifqivnqka
      241 isfclhvdle sendkrayas ydgfwiedea csfkihlgry sgnagdafrg yrkehnqnsm
      301 pfstfdvdnd gcrpictika qpvkscsnfs dntgwwfnqc glanlngvhr ytgrflatgi
      361 hwdtwtmnnk pvkiksvsmk irrtfkpyfh
//
LOCUS       XP_053912868             357 aa            linear   VRT 09-MAR-2023
DEFINITION  retinoic acid-induced protein 3 [Cuculus canorus].
ACCESSION   XP_053912868
VERSION     XP_053912868.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056893.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..357
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..357
                     /product="retinoic acid-induced protein 3"
                     /calculated_mol_wt=40524
     Region          26..272
                     /region_name="7tmC_RAIG1_4_GPRC5A_D"
                     /note="retinoic acid-inducible orphan G-protein-coupled
                     receptors 1 and 4; class C family of seven-transmembrane G
                     protein-coupled receptors, group 5, member A and D;
                     cd15279"
                     /db_xref="CDD:320406"
     Region          26..51
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320406"
     Site            order(29,32..33,36..37,39..40,76,80,83..84,92,96)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:320406"
     Region          65..86
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320406"
     Site            order(85,97..98,101..102,105,171,176,179..180,183,219,
                     222..223,226,230,243..244,247,250,254)
                     /site_type="other"
                     /note="putative allosteric modulator binding site
                     [chemical binding]"
                     /db_xref="CDD:320406"
     Region          95..119
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320406"
     Region          136..152
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320406"
     Region          172..198
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320406"
     Region          208..231
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320406"
     Region          241..266
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320406"
     CDS             1..357
                     /gene="LOC104055518"
                     /coded_by="XM_054056893.1:257..1330"
                     /db_xref="GeneID:104055518"
ORIGIN      
        1 matssppqgc gnidadyyll cdmqqawgiv leslaaagvf vtiflmgslf flickvqdns
       61 krhmisiyff fllgtlgifg ltfafiikln ertrptrffl fgvifalcfs cllthacnln
      121 rlvrgrkpfs wpvllllivs falvqvvisi eylvtmlvnq keqfmsmsae etnkdfvmll
      181 iyvlflmalt fcvsmftfcg sykswkrhga hifvtvlfsi atwvvwitml tkgnrvlnrp
      241 nwddpvvaia lvsngwifli myivpeicfl tapvklgdyp pendfcqpkf ikqttgvenr
      301 aytqdeimqg dtgdnsyspy sshfqmknie pqndfsiprp ktrtspyedy tggkgpm
//
LOCUS       XP_053912869             357 aa            linear   VRT 09-MAR-2023
DEFINITION  retinoic acid-induced protein 3 [Cuculus canorus].
ACCESSION   XP_053912869
VERSION     XP_053912869.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056894.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..357
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..357
                     /product="retinoic acid-induced protein 3"
                     /calculated_mol_wt=40524
     Region          26..272
                     /region_name="7tmC_RAIG1_4_GPRC5A_D"
                     /note="retinoic acid-inducible orphan G-protein-coupled
                     receptors 1 and 4; class C family of seven-transmembrane G
                     protein-coupled receptors, group 5, member A and D;
                     cd15279"
                     /db_xref="CDD:320406"
     Region          26..51
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320406"
     Site            order(29,32..33,36..37,39..40,76,80,83..84,92,96)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:320406"
     Region          65..86
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320406"
     Site            order(85,97..98,101..102,105,171,176,179..180,183,219,
                     222..223,226,230,243..244,247,250,254)
                     /site_type="other"
                     /note="putative allosteric modulator binding site
                     [chemical binding]"
                     /db_xref="CDD:320406"
     Region          95..119
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320406"
     Region          136..152
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320406"
     Region          172..198
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320406"
     Region          208..231
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320406"
     Region          241..266
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320406"
     CDS             1..357
                     /gene="LOC104055518"
                     /coded_by="XM_054056894.1:247..1320"
                     /db_xref="GeneID:104055518"
ORIGIN      
        1 matssppqgc gnidadyyll cdmqqawgiv leslaaagvf vtiflmgslf flickvqdns
       61 krhmisiyff fllgtlgifg ltfafiikln ertrptrffl fgvifalcfs cllthacnln
      121 rlvrgrkpfs wpvllllivs falvqvvisi eylvtmlvnq keqfmsmsae etnkdfvmll
      181 iyvlflmalt fcvsmftfcg sykswkrhga hifvtvlfsi atwvvwitml tkgnrvlnrp
      241 nwddpvvaia lvsngwifli myivpeicfl tapvklgdyp pendfcqpkf ikqttgvenr
      301 aytqdeimqg dtgdnsyspy sshfqmknie pqndfsiprp ktrtspyedy tggkgpm
//
LOCUS       XP_053912870             477 aa            linear   VRT 09-MAR-2023
DEFINITION  putative interleukin-17 receptor E-like isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912870
VERSION     XP_053912870.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056895.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..477
                     /product="putative interleukin-17 receptor E-like isoform
                     X1"
                     /calculated_mol_wt=53628
     Region          <239..437
                     /region_name="IL17_R_N"
                     /note="Interleukin-17 receptor extracellular region;
                     pfam15037"
                     /db_xref="CDD:464460"
     CDS             1..477
                     /gene="IL17REL"
                     /coded_by="XM_054056895.1:26..1459"
                     /db_xref="GeneID:104055288"
ORIGIN      
        1 misihvqill iilfwnsdcq iiprieecgl scsqgincks kpsssifnsf chdapatlss
       61 tvlksmkist vmkciqgspc slylnikgtl sldenirgle icslsldtqq sqctnvrfar
      121 kkskmlngkk vqvqfnciev nvaqhiyvtm ktvpnfcevk lsqeyyvedc rnsdlgkyip
      181 acsagkidyn vdrarkmisv nvsnflqdqd yyirlchkwf tcedagafav ikgkeslksv
      241 slkysqllpc lciegwlaip darriqlcpf endtealwdn ivynpatqtl awepacpilv
      301 ivnlcrlmks ndhcediqnt yknssekqvk ysrvdthprl cmkfttkkgs wvrcpfahge
      361 fpgwkmrtaa aaeqiqvfft sqmkaqfsvl vcnrtqltsc esvgvhhsvs vgdsvsitms
      421 qemcgstici qgwrtdvdys vplqicdihc gfrgqtysdg npakamthrm ktvhslr
//
LOCUS       XP_053912871             476 aa            linear   VRT 09-MAR-2023
DEFINITION  putative interleukin-17 receptor E-like isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912871
VERSION     XP_053912871.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056896.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..476
                     /product="putative interleukin-17 receptor E-like isoform
                     X2"
                     /calculated_mol_wt=53500
     Region          <239..436
                     /region_name="IL17_R_N"
                     /note="Interleukin-17 receptor extracellular region;
                     pfam15037"
                     /db_xref="CDD:464460"
     CDS             1..476
                     /gene="IL17REL"
                     /coded_by="XM_054056896.1:26..1456"
                     /db_xref="GeneID:104055288"
ORIGIN      
        1 misihvqill iilfwnsdcq iiprieecgl scsqgincks kpsssifnsf chdapatlss
       61 tvlksmkist vmkciqgspc slylnikgtl sldenirgle icslsldtqq sqctnvrfar
      121 kkskmlngkk vqvqfnciev nvaqhiyvtm ktvpnfcevk lsqeyyvedc rnsdlgkyip
      181 acsagkidyn vdrarkmisv nvsnflqdqd yyirlchkwf tcedagafav ikgkeslksv
      241 slkysqllpc lciegwlaip darriqlcpf endtealwdn ivynpatqtl awepacpilv
      301 ivnlcrlmks ndhcediqnt yknssekvky srvdthprlc mkfttkkgsw vrcpfahgef
      361 pgwkmrtaaa aeqiqvffts qmkaqfsvlv cnrtqltsce svgvhhsvsv gdsvsitmsq
      421 emcgsticiq gwrtdvdysv plqicdihcg frgqtysdgn pakamthrmk tvhslr
//
LOCUS       XP_053912872             476 aa            linear   VRT 09-MAR-2023
DEFINITION  putative interleukin-17 receptor E-like isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053912872
VERSION     XP_053912872.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056897.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..476
                     /product="putative interleukin-17 receptor E-like isoform
                     X3"
                     /calculated_mol_wt=53479
     Region          <239..437
                     /region_name="IL17_R_N"
                     /note="Interleukin-17 receptor extracellular region;
                     pfam15037"
                     /db_xref="CDD:464460"
     CDS             1..476
                     /gene="IL17REL"
                     /coded_by="XM_054056897.1:26..1456"
                     /db_xref="GeneID:104055288"
ORIGIN      
        1 misihvqill iilfwnsdcq iiprieecgl scsqgincks kpsssifnsf chdapatlss
       61 tvlksmkist vmkciqgspc slylnikgtl sldenirgle icslsldtqq sqctnvrfar
      121 kkskmlngkk vqvqfnciev nvaqhiyvtm ktvpnfcevk lsqeyyvedc rnsdlgkyip
      181 acsagkidyn vdrarkmisv nvsnflqdqd yyirlchkwf tcedagafav ikgkeslksv
      241 slkysqllpc lciegwlaip darriqlcpf endtealwdn ivynpatqtl awepacpilv
      301 ivnlcrlmks ndhcediqnt yknssekqvk ysrvdthprl cmkfttkkgs wvrcpfahge
      361 fpgwkmrtaa aaeqiqvfft sqmkaqfsvl vcnrtqltsc esvgvhhsvs vgdsvsitms
      421 qemcgstici qgwrtdvdys vplqicdihc gfrgqtysdg npakamthry slrgnl
//
LOCUS       XP_053912873             446 aa            linear   VRT 09-MAR-2023
DEFINITION  putative interleukin-17 receptor E-like isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053912873
VERSION     XP_053912873.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056898.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..446
                     /product="putative interleukin-17 receptor E-like isoform
                     X4"
                     /calculated_mol_wt=50234
     Region          <239..388
                     /region_name="IL17_R_N"
                     /note="Interleukin-17 receptor extracellular region;
                     pfam15037"
                     /db_xref="CDD:464460"
     CDS             1..446
                     /gene="IL17REL"
                     /coded_by="XM_054056898.1:26..1366"
                     /db_xref="GeneID:104055288"
ORIGIN      
        1 misihvqill iilfwnsdcq iiprieecgl scsqgincks kpsssifnsf chdapatlss
       61 tvlksmkist vmkciqgspc slylnikgtl sldenirgle icslsldtqq sqctnvrfar
      121 kkskmlngkk vqvqfnciev nvaqhiyvtm ktvpnfcevk lsqeyyvedc rnsdlgkyip
      181 acsagkidyn vdrarkmisv nvsnflqdqd yyirlchkwf tcedagafav ikgkeslksv
      241 slkysqllpc lciegwlaip darriqlcpf endtealwdn ivynpatqtl awepacpilv
      301 ivnlcrlmks ndhcediqnt yknssekqvk ysrvdthprl cmkfttkkgs wvrcpfahge
      361 fpgwkmrtaa aaeqiqvfft sqmkaqfsvl vcnrtqltsc esvgvhhsvs vgdsvsitms
      421 qemcgstici qvfvvrhtvm etrqrp
//
LOCUS       XP_053912874             412 aa            linear   VRT 09-MAR-2023
DEFINITION  putative interleukin-17 receptor E-like isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053912874
VERSION     XP_053912874.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056899.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..412
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..412
                     /product="putative interleukin-17 receptor E-like isoform
                     X5"
                     /calculated_mol_wt=46520
     Region          <174..372
                     /region_name="IL17_R_N"
                     /note="Interleukin-17 receptor extracellular region;
                     pfam15037"
                     /db_xref="CDD:464460"
     CDS             1..412
                     /gene="IL17REL"
                     /coded_by="XM_054056899.1:199..1437"
                     /db_xref="GeneID:104055288"
ORIGIN      
        1 mkistvmkci qgspcslyln ikgtlslden irgleicsls ldtqqsqctn vrfarkkskm
       61 lngkkvqvqf ncievnvaqh iyvtmktvpn fcevklsqey yvedcrnsdl gkyipacsag
      121 kidynvdrar kmisvnvsnf lqdqdyyirl chkwftceda gafavikgke slksvslkys
      181 qllpclcieg wlaipdarri qlcpfendte alwdnivynp atqtlawepa cpilvivnlc
      241 rlmksndhce diqntyknss ekqvkysrvd thprlcmkft tkkgswvrcp fahgefpgwk
      301 mrtaaaaeqi qvfftsqmka qfsvlvcnrt qltscesvgv hhsvsvgdsv sitmsqemcg
      361 sticiqgwrt dvdysvplqi cdihcgfrgq tysdgnpaka mthrmktvhs lr
//
LOCUS       XP_053912876             915 aa            linear   VRT 09-MAR-2023
DEFINITION  protocadherin-20 [Cuculus canorus].
ACCESSION   XP_053912876
VERSION     XP_053912876.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056901.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..915
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..915
                     /product="protocadherin-20"
                     /calculated_mol_wt=100017
     Region          43..>115
                     /region_name="Cadherin_2"
                     /note="Cadherin-like; pfam08266"
                     /db_xref="CDD:462413"
     Region          180..280
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(184..185,243,245,276,278..279)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          290..380
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          402..495
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(407..408,460,462,491,493..494)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          504..599
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(510..511,562,564,595,597..598)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          608..702
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(614..615,665,667,698,700..701)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          718..809
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     CDS             1..915
                     /gene="PCDH20"
                     /coded_by="XM_054056901.1:77..2824"
                     /db_xref="GeneID:104061850"
ORIGIN      
        1 mgipggrgss sargsrqhll lfllfvgpfn cfasysrate lfyslneglp agvligslar
       61 dlrlpttdgq hpaalqppls ftlashglgg qyvqldnrsg elhtsaveid realcvessg
      121 atvfggaaav sssslspesc lllldvlvlp qeyfrlvkvk iairdvndna phfpvphicl
      181 svpenapvnt rlaiehpald pdvgtngvqt yrlqdnygvf tldveenesg ertpylivmg
      241 aldreareey vtvivaedgg tpplvgsatl tigisdindn cpqfsdaqln vtlygnstlg
      301 thvatvhaid mdlgsnaeit ysysqkvpqp srdlfhldes igtitlsskv dgdaprlhrl
      361 ivlgngpgci pavitvlvti ikvmmrppei vprfianeve gvvylkelep intpiaffti
      421 kdpdekyevn cyldgdgpfr lspykpynne yllettkpld yetqqlyeis vvawnsegfh
      481 vtkiikvhvl ddndnspvfs qqlielsiee nnvpnafltk lhatdadsge rgqvsyflgp
      541 dapsyfsldk isgvltvstq ldreekekyr ytvkavdsgf ppresiatvt itvldkndns
      601 prfinkdfsf fvpenfpgfg eigvisvtda dagqngwval svlngsdifv idtgkgvlra
      661 kvsldreqqs syilwieavd ggdpalssta kitillldin dnpplvlfpq snmsyllvlp
      721 stlpgspite vyavdkdtgm naviaysiig rrgprpesfr idpktgnitl eeslmqndyg
      781 lyrllvkvsd hgypeplhst vmvnlfvndt vsnesyiesl lrkepdisie ekqpqisiep
      841 thkkiesasc mpmlvalsii slgsitlvtg mgiyiclsrg kkhhradenl evqiplngri
      901 nlhmlekkpv eisni
//
LOCUS       XP_053912877             466 aa            linear   VRT 09-MAR-2023
DEFINITION  spindle and kinetochore-associated protein 3 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912877
VERSION     XP_053912877.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056902.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..466
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..466
                     /product="spindle and kinetochore-associated protein 3
                     isoform X1"
                     /calculated_mol_wt=53041
     Region          7..102
                     /region_name="SKA3_N"
                     /note="Spindle and kinetochore-associated protein 3,
                     N-terminal domain; cd12957"
                     /db_xref="CDD:240570"
     Site            order(10,14,17,21,25,28..29,37,41..42,45,48..49,52..53,
                     55..56,59..60,62..63,66..67,69..70,74,77,80)
                     /site_type="other"
                     /note="SKA1 interface [polypeptide binding]"
                     /db_xref="CDD:240570"
     Site            order(11,14,18,22,25..26,29,48,52,55,58..59,62,69,73,76,
                     79..80,82..83,90,94,97)
                     /site_type="other"
                     /note="SKA2 interface [polypeptide binding]"
                     /db_xref="CDD:240570"
     CDS             1..466
                     /gene="SKA3"
                     /coded_by="XM_054056902.1:139..1539"
                     /db_xref="GeneID:104055344"
ORIGIN      
        1 mdlskgffrq lqdlastvek evrqleralh redtddeves parllhdlhc eiktlkedvs
       61 asldkcssek qpiheflkas evlmqrnaad lgkirelfrn ygykphgkds teeeekevks
      121 dsmmyaqnks deekldeaph lpactkkppl pedslrdpql sdfgltqyaf srpwgagtgq
      181 ratnayqens nrtpvtprtp svlpktpkcm lkmddyecvt pkleqfgise htmclnedyt
      241 mslirktaqa vkkfvkkddh evnvsemtsk eimatprpkp kvasenadwm aspmvfvfct
      301 pdvkissrty etvlskspkt nelplpshte tpqlpkfeag wlkteakevk qrekietkng
      361 atnkqyredr vpfavssdey lerfgdpspp kikqydqlld tppppeitri pddvlqilsk
      421 ynrnvdsskv kkmenkagnt tryendftdy cdkengglsg ifktki
//
LOCUS       XP_053912878             412 aa            linear   VRT 09-MAR-2023
DEFINITION  spindle and kinetochore-associated protein 3 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912878
VERSION     XP_053912878.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056903.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..412
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..412
                     /product="spindle and kinetochore-associated protein 3
                     isoform X2"
                     /calculated_mol_wt=46727
     Region          <1..48
                     /region_name="SKA3_N"
                     /note="Spindle and kinetochore-associated protein 3,
                     N-terminal domain; cd12957"
                     /db_xref="CDD:240570"
     CDS             1..412
                     /gene="SKA3"
                     /coded_by="XM_054056903.1:297..1535"
                     /db_xref="GeneID:104055344"
ORIGIN      
        1 mkedvsasld kcssekqpih eflkasevlm qrnaadlgki relfrnygyk phgkdsteee
       61 ekevksdsmm yaqnksdeek ldeaphlpac tkkpplpeds lrdpqlsdfg ltqyafsrpw
      121 gagtgqratn ayqensnrtp vtprtpsvlp ktpkcmlkmd dyecvtpkle qfgisehtmc
      181 lnedytmsli rktaqavkkf vkkddhevnv semtskeima tprpkpkvas enadwmaspm
      241 vfvfctpdvk issrtyetvl skspktnelp lpshtetpql pkfeagwlkt eakevkqrek
      301 ietkngatnk qyredrvpfa vssdeylerf gdpsppkikq ydqlldtppp peitripddv
      361 lqilskynrn vdsskvkkme nkagnttrye ndftdycdke ngglsgifkt ki
//
LOCUS       XP_053912879             412 aa            linear   VRT 09-MAR-2023
DEFINITION  spindle and kinetochore-associated protein 3 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912879
VERSION     XP_053912879.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056904.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..412
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..412
                     /product="spindle and kinetochore-associated protein 3
                     isoform X2"
                     /calculated_mol_wt=46727
     Region          <1..48
                     /region_name="SKA3_N"
                     /note="Spindle and kinetochore-associated protein 3,
                     N-terminal domain; cd12957"
                     /db_xref="CDD:240570"
     CDS             1..412
                     /gene="SKA3"
                     /coded_by="XM_054056904.1:229..1467"
                     /db_xref="GeneID:104055344"
ORIGIN      
        1 mkedvsasld kcssekqpih eflkasevlm qrnaadlgki relfrnygyk phgkdsteee
       61 ekevksdsmm yaqnksdeek ldeaphlpac tkkpplpeds lrdpqlsdfg ltqyafsrpw
      121 gagtgqratn ayqensnrtp vtprtpsvlp ktpkcmlkmd dyecvtpkle qfgisehtmc
      181 lnedytmsli rktaqavkkf vkkddhevnv semtskeima tprpkpkvas enadwmaspm
      241 vfvfctpdvk issrtyetvl skspktnelp lpshtetpql pkfeagwlkt eakevkqrek
      301 ietkngatnk qyredrvpfa vssdeylerf gdpsppkikq ydqlldtppp peitripddv
      361 lqilskynrn vdsskvkkme nkagnttrye ndftdycdke ngglsgifkt ki
//
LOCUS       XP_053912880             383 aa            linear   VRT 09-MAR-2023
DEFINITION  spindle and kinetochore-associated protein 3 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053912880
VERSION     XP_053912880.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056905.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..383
                     /product="spindle and kinetochore-associated protein 3
                     isoform X3"
                     /calculated_mol_wt=43495
     CDS             1..383
                     /gene="SKA3"
                     /coded_by="XM_054056905.1:237..1388"
                     /db_xref="GeneID:104055344"
ORIGIN      
        1 mqrnaadlgk irelfrnygy kphgkdstee eekevksdsm myaqnksdee kldeaphlpa
       61 ctkkpplped slrdpqlsdf gltqyafsrp wgagtgqrat nayqensnrt pvtprtpsvl
      121 pktpkcmlkm ddyecvtpkl eqfgisehtm clnedytmsl irktaqavkk fvkkddhevn
      181 vsemtskeim atprpkpkva senadwmasp mvfvfctpdv kissrtyetv lskspktnel
      241 plpshtetpq lpkfeagwlk teakevkqre kietkngatn kqyredrvpf avssdeyler
      301 fgdpsppkik qydqlldtpp ppeitripdd vlqilskynr nvdsskvkkm enkagnttry
      361 endftdycdk engglsgifk tki
//
LOCUS       XP_009564375             624 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier family 23 member 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_009564375
VERSION     XP_009564375.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566080.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564375.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..624
                     /product="solute carrier family 23 member 1 isoform X1"
                     /calculated_mol_wt=66833
     Region          44..541
                     /region_name="UraA"
                     /note="Xanthine/uracil permease [Nucleotide transport and
                     metabolism]; COG2233"
                     /db_xref="CDD:441834"
     CDS             1..624
                     /gene="LOC104063811"
                     /coded_by="XM_009566080.2:414..2288"
                     /db_xref="GeneID:104063811"
ORIGIN      
        1 mtpssdkeln gldnpsfvge dgshycssld havrgpeegr dkghgssnla ytvtdvppwy
       61 lcillgiqhf ltamgglvai plilskelcl qhdlltqshl istiffvsgi ctllqvlfgv
      121 rlpiiqggtf afltptlaml slpkwkcpaw tqnatlvnas spefievwqt rmrevqgaii
      181 vascfqifvg fsgligflmr figpltiapt itlvalplfd sagdeagqhw giafmtisfi
      241 vlfsqylkdv pvplpsyqrg krchvspvyl fqifpvllgl slswllcyvl tvtdvlpadp
      301 tayghlartd trgdvlsqap wfrlpypgqw gvptvslagi fgilagviss mlesvgdyya
      361 carlsgappp pkhaisrgig vegigcllag awgtgngtts ysenvgalgi tkvgsrmvii
      421 agacamllsg ifgkvgamla siptpviggm flvmfgvita vgisnlqytd mnssrnifif
      481 gfsvfagltv pnwasknsal letgiiqldq viqvllttgm fvggllgfil dntipgtqee
      541 rglrawknsh kgevdnsrli skvydlpfgi gttycavswf rylpacpkrl sggkkmdelk
      601 aagqesnvka ssekdseiga dtri
//
LOCUS       XP_053912881             551 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier family 23 member 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912881
VERSION     XP_053912881.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056906.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..551
                     /product="solute carrier family 23 member 1 isoform X2"
                     /calculated_mol_wt=58946
     Region          2..468
                     /region_name="UraA"
                     /note="Xanthine/uracil permease [Nucleotide transport and
                     metabolism]; COG2233"
                     /db_xref="CDD:441834"
     CDS             1..551
                     /gene="LOC104063811"
                     /coded_by="XM_054056906.1:171..1826"
                     /db_xref="GeneID:104063811"
ORIGIN      
        1 mgglvaipli lskelclqhd lltqshlist iffvsgictl lqvlfgvrlp iiqggtfafl
       61 tptlamlslp kwkcpawtqn atlvnasspe fievwqtrmr evqgaiivas cfqifvgfsg
      121 ligflmrfig pltiaptitl valplfdsag deagqhwgia fmtisfivlf sqylkdvpvp
      181 lpsyqrgkrc hvspvylfqi fpvllglsls wllcyvltvt dvlpadptay ghlartdtrg
      241 dvlsqapwfr lpypgqwgvp tvslagifgi lagvissmle svgdyyacar lsgappppkh
      301 aisrgigveg igcllagawg tgngttsyse nvgalgitkv gsrmviiaga camllsgifg
      361 kvgamlasip tpviggmflv mfgvitavgi snlqytdmns srnififgfs vfagltvpnw
      421 asknsallet giiqldqviq vllttgmfvg gllgfildnt ipgtqeergl rawknshkge
      481 vdnsrliskv ydlpfgigtt ycavswfryl pacpkrlsgg kkmdelkaag qesnvkasse
      541 kdseigadtr i
//
LOCUS       XP_053912882             551 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier family 23 member 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912882
VERSION     XP_053912882.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056907.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..551
                     /product="solute carrier family 23 member 1 isoform X3"
                     /calculated_mol_wt=58788
     Region          48..468
                     /region_name="UraA"
                     /note="Xanthine/uracil permease [Nucleotide transport and
                     metabolism]; COG2233"
                     /db_xref="CDD:441834"
     CDS             1..551
                     /gene="LOC104063811"
                     /coded_by="XM_054056907.1:475..2130"
                     /db_xref="GeneID:104063811"
ORIGIN      
        1 mgattaprwt mlsgaqrkag trvtaaailp tpsrmcppgt sascwefrlp iiqggtfafl
       61 tptlamlslp kwkcpawtqn atlvnasspe fievwqtrmr evqgaiivas cfqifvgfsg
      121 ligflmrfig pltiaptitl valplfdsag deagqhwgia fmtisfivlf sqylkdvpvp
      181 lpsyqrgkrc hvspvylfqi fpvllglsls wllcyvltvt dvlpadptay ghlartdtrg
      241 dvlsqapwfr lpypgqwgvp tvslagifgi lagvissmle svgdyyacar lsgappppkh
      301 aisrgigveg igcllagawg tgngttsyse nvgalgitkv gsrmviiaga camllsgifg
      361 kvgamlasip tpviggmflv mfgvitavgi snlqytdmns srnififgfs vfagltvpnw
      421 asknsallet giiqldqviq vllttgmfvg gllgfildnt ipgtqeergl rawknshkge
      481 vdnsrliskv ydlpfgigtt ycavswfryl pacpkrlsgg kkmdelkaag qesnvkasse
      541 kdseigadtr i
//
LOCUS       XP_053912883             334 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850991 [Cuculus canorus].
ACCESSION   XP_053912883
VERSION     XP_053912883.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056908.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..334
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..334
                     /product="uncharacterized protein LOC128850991"
                     /calculated_mol_wt=38471
     Region          <24..128
                     /region_name="ps-ssRNAv_RdRp-like"
                     /note="conserved catalytic core domain of RNA-dependent
                     RNA polymerase (RdRp) from the positive-sense
                     single-stranded RNA [(+)ssRNA] viruses and closely related
                     viruses; cl40470"
                     /db_xref="CDD:477363"
     Site            26
                     /site_type="other"
                     /note="nucleic acid binding site [nucleotide binding]"
                     /db_xref="CDD:238827"
     CDS             1..334
                     /gene="LOC128850991"
                     /coded_by="XM_054056908.1:904..1908"
                     /db_xref="GeneID:128850991"
ORIGIN      
        1 mrkeifmchh kwlktsrkit sghpqrsvlr lvlfstfind tdsetectls ksaddtklsg
       61 avatlggwdv iqrdlhrlek wacenlmrfn kakckvlhlg qgnpqfqymm rddviessps
      121 ekdmgvlvde nldmcrqhal aaqkanrtlg ciensvasra revilplyss lvrphleycv
      181 qfwnprhkkd mellirglea lpyedrlrdl glfslekrrl rgdlivtfqy lkgayrrage
      241 glftkacsdr akgngfkldr grfrldmrkn fftiremrhw nrlpreavda sslemfnarl
      301 dgasgsliww dvpaygmgvq trrslrslpt qtil
//
LOCUS       XP_053912884             303 aa            linear   VRT 09-MAR-2023
DEFINITION  cysteinyl leukotriene receptor 2 [Cuculus canorus].
ACCESSION   XP_053912884
VERSION     XP_053912884.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056909.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..303
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..303
                     /product="cysteinyl leukotriene receptor 2"
                     /calculated_mol_wt=34691
     Region          22..297
                     /region_name="7tmA_CysLTR2"
                     /note="cysteinyl leukotriene receptor 2, member of the
                     class A family of seven-transmembrane G protein-coupled
                     receptors; cd15157"
                     /db_xref="CDD:320285"
     Region          22..49
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320285"
     Region          56..81
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320285"
     Site            order(77,80..81,94..99,101..102,105,150,152..156,179,
                     182..184,186..188,190..191,241,244..245,247..248,251,
                     264..265,267..269,272,275..276)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320285"
     Region          94..124
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320285"
     Region          136..157
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320285"
     Region          179..208
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320285"
     Region          221..251
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320285"
     Region          265..290
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320285"
     CDS             1..303
                     /gene="CYSLTR2"
                     /coded_by="XM_054056909.1:413..1324"
                     /db_xref="GeneID:104066184"
ORIGIN      
        1 malhdnytns sfnctidsfk qaiypsmyis mfflgtvgng lsifvffqps qrktpvnvym
       61 qnlavsdlmf vstlpfraty ylmgshwifg dilcrimsys fyvnmyysiy iltvlsvvrf
      121 iaivypfkhw kvtnmkyari icaaiwvfvl aasspllgnp gyrhhakcld lhpssshrll
      181 mmnsfvlvvg filpfvtiii cyvfavkall ksktpqckna fcrkkalsti iitlilfflc
      241 flpyhilrtv ylmrshcsqd glpvhkalvv sfclasmnsc ldpvlyyfaa enfkvkirsl
      301 fcr
//
LOCUS       XP_053912885             303 aa            linear   VRT 09-MAR-2023
DEFINITION  cysteinyl leukotriene receptor 2 [Cuculus canorus].
ACCESSION   XP_053912885
VERSION     XP_053912885.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056910.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..303
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..303
                     /product="cysteinyl leukotriene receptor 2"
                     /calculated_mol_wt=34691
     Region          22..297
                     /region_name="7tmA_CysLTR2"
                     /note="cysteinyl leukotriene receptor 2, member of the
                     class A family of seven-transmembrane G protein-coupled
                     receptors; cd15157"
                     /db_xref="CDD:320285"
     Region          22..49
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320285"
     Region          56..81
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320285"
     Site            order(77,80..81,94..99,101..102,105,150,152..156,179,
                     182..184,186..188,190..191,241,244..245,247..248,251,
                     264..265,267..269,272,275..276)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320285"
     Region          94..124
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320285"
     Region          136..157
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320285"
     Region          179..208
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320285"
     Region          221..251
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320285"
     Region          265..290
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320285"
     CDS             1..303
                     /gene="CYSLTR2"
                     /coded_by="XM_054056910.1:424..1335"
                     /db_xref="GeneID:104066184"
ORIGIN      
        1 malhdnytns sfnctidsfk qaiypsmyis mfflgtvgng lsifvffqps qrktpvnvym
       61 qnlavsdlmf vstlpfraty ylmgshwifg dilcrimsys fyvnmyysiy iltvlsvvrf
      121 iaivypfkhw kvtnmkyari icaaiwvfvl aasspllgnp gyrhhakcld lhpssshrll
      181 mmnsfvlvvg filpfvtiii cyvfavkall ksktpqckna fcrkkalsti iitlilfflc
      241 flpyhilrtv ylmrshcsqd glpvhkalvv sfclasmnsc ldpvlyyfaa enfkvkirsl
      301 fcr
//
LOCUS       XP_053912886            1281 aa            linear   VRT 09-MAR-2023
DEFINITION  TBC1 domain family member 4 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912886
VERSION     XP_053912886.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056911.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1281
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1281
                     /product="TBC1 domain family member 4 isoform X1"
                     /calculated_mol_wt=144351
     Region          29..184
                     /region_name="PH-like"
                     /note="Pleckstrin homology-like domain; cl17171"
                     /db_xref="CDD:473070"
     Region          187..438
                     /region_name="PTB_TBC1D1_like"
                     /note="TBC1 domain family member 1 and related proteins
                     Phosphotyrosine-binding (PTB) domain; cd01269"
                     /db_xref="CDD:269967"
     Site            order(199,397,420)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:269967"
     Site            order(386..391,404,431,435)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:269967"
     Region          801..852
                     /region_name="DUF3350"
                     /note="Domain of unknown function (DUF3350); pfam11830"
                     /db_xref="CDD:463365"
     Region          906..1120
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     CDS             1..1281
                     /gene="TBC1D4"
                     /coded_by="XM_054056911.1:83..3928"
                     /db_xref="GeneID:104054964"
ORIGIN      
        1 merrgegeal shplepepep qpepqpaekr frlwyvgssc ldrrttlpml pwlvaeirrr
       61 gqrqepggal gggvparevl lvlgsptlrc vpagaspapa arpgspapav fifehkaqhi
      121 arfihnshdl tyfaylikaq pdnpdspmac hvfratdpnq vpdvissirq vskaalkeda
      181 kpskdsedaf ydsqkfevly cgkvtvahkk apstliddci ekfslherqr lkllneqrnn
      241 essldlplge gnvptsplds pfeeldspnn ttghatmftv gsqtnltsla strgsfperi
      301 ledsgfdeqq efrsrcssvt avmqrrvhdt nlkiqprrrh asapshvqps dseknrtmlf
      361 qvgrfevnli spdtksvvle knfkdisscs qgikhvdhfg ficresvepg lsqyvcyvfq
      421 caseslvdev mltlkqafst aaalqnaktq iklceacpmh slhklcerie glyppraklv
      481 iqshlssltd neqadiferv qkmkpendqe enelvilylr qlcetkqkth vhigetpsti
      541 snnaipentt sggrfkldil knkakksfts slenifsrga nrmrgrlgsv dsfercnsla
      601 sdkdaspgds ppatppaspv ssawqpfpee dsdspqfrrr ahtfshppss trrritfqng
      661 rsqsvrspll rqscvettsp ivgvrralse sgsaspglps svsapsflks fypgsgrllq
      721 hsesdlsksd gegkkrtpti csseslntvg atltprrisw rrriflqvas plnkspskmq
      781 hpdghdgsel lplsplappl eedplvlvlq nedgpdktge rknaeelqsl wrkaihqqil
      841 llrmekenqk leasrdelqs rkvkldydev gtcqkdaini wdkkllncra kircdmedih
      901 stlkegvpks rrgeiwqfla vqhrvrhrlp nkqqppdisy kellkqltaq qhailvdlgr
      961 tfpthpyfsa hlgagqlslf nllkayslld kevgycqgis fvagvlllhm seeqafemlk
     1021 flmydlgfrk qyrpdmmslq iqmyqlsrll hdyhrdlynh leeneispsl yaapwfltlf
     1081 asqfplgfva rvfdiiflqg tevifkvals llssqetsim gcesfenivd flkttipdmt
     1141 qpqmekiitq vfemdiskql hayeveyhvl qdelqenvnt cdegeplekl eranshlkrq
     1201 nmdlleklqv ahakiqsles sletiltren kmktviqsle qekityqktl eqiikylpae
     1261 alsdcelllk evnynpnnki k
//
LOCUS       XP_009554336             386 aa            linear   VRT 09-MAR-2023
DEFINITION  TBC1 domain family member 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_009554336
VERSION     XP_009554336.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556041.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554336.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..386
                     /product="TBC1 domain family member 4 isoform X2"
                     /calculated_mol_wt=44742
     Region          11..225
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     CDS             1..386
                     /gene="TBC1D4"
                     /coded_by="XM_009556041.2:1980..3140"
                     /db_xref="GeneID:104054964"
ORIGIN      
        1 medihstlke gvpksrrgei wqflavqhrv rhrlpnkqqp pdisykellk qltaqqhail
       61 vdlgrtfpth pyfsahlgag qlslfnllka yslldkevgy cqgisfvagv lllhmseeqa
      121 femlkflmyd lgfrkqyrpd mmslqiqmyq lsrllhdyhr dlynhleene ispslyaapw
      181 fltlfasqfp lgfvarvfdi iflqgtevif kvalsllssq etsimgcesf enivdflktt
      241 ipdmtqpqme kiitqvfemd iskqlhayev eyhvlqdelq envntcdege pleklerans
      301 hlkrqnmdll eklqvahaki qslessleti ltrenkmktv iqsleqekit yqktleqiik
      361 ylpaealsdc elllkevnyn pnnkik
//
LOCUS       XP_053912887             205 aa            linear   VRT 09-MAR-2023
DEFINITION  COMM domain-containing protein 6 [Cuculus canorus].
ACCESSION   XP_053912887
VERSION     XP_053912887.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056912.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..205
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..205
                     /product="COMM domain-containing protein 6"
                     /calculated_mol_wt=22433
     Region          119..203
                     /region_name="Commd"
                     /note="COMM_Domain, a family of domains found at the
                     C-terminus of HCarG, the copper metabolism gene MURR1
                     product, and related proteins. Presumably all COMM_Domain
                     containing proteins are located in the nucleus and the
                     COMM domain plays a role in...; cl06336"
                     /db_xref="CDD:471425"
     CDS             1..205
                     /gene="COMMD6"
                     /coded_by="XM_054056912.1:57..674"
                     /db_xref="GeneID:104054970"
ORIGIN      
        1 masrtaaara laaldvdgta dkidlipqdf faelceqiiq hlnhkipgvn taelcqrmqt
       61 sgieitvgdl ekianiisfl fstaarnslc teelvttlgn avstlpkhav qvirhvwner
      121 gksisvseda tsmatvgqfv dmkwklgvat ssdscrslkf pyvtvmlkva dpsgqityks
      181 femtipqfqn ffrqfkemaa vletv
//
LOCUS       XP_053912888             724 aa            linear   VRT 09-MAR-2023
DEFINITION  G2 and S phase-expressed protein 1 [Cuculus canorus].
ACCESSION   XP_053912888
VERSION     XP_053912888.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056913.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..724
                     /product="G2 and S phase-expressed protein 1"
                     /calculated_mol_wt=77245
     Region          30..168
                     /region_name="GTSE1_N"
                     /note="G-2 and S-phase expressed 1; pfam15259"
                     /db_xref="CDD:464599"
     Region          650..704
                     /region_name="GTSE1_CTD"
                     /note="C-terminal domain of G2 and S phase-expressed
                     protein 1; cd21864"
                     /db_xref="CDD:412061"
     Site            order(653..656,673..676,698..701)
                     /site_type="other"
                     /note="clathrin box motifs"
                     /db_xref="CDD:412061"
     Site            order(670..676,693..695,698..701,703)
                     /site_type="other"
                     /note="clathrin binding site [polypeptide binding]"
                     /db_xref="CDD:412061"
     CDS             1..724
                     /gene="GTSE1"
                     /coded_by="XM_054056913.1:66..2240"
                     /db_xref="GeneID:104056059"
ORIGIN      
        1 meegkemaac cssneteekt sihmsnvsdl illcdekfdf dlslspasgn edevfigplg
       61 hkekciavni eakknaeekt vsvcdekwsp ltgeklveif kearllalqi etgskkeqte
      121 isqseeqenk iiekfveese sklkilrnqn iknspravkr etycvwdspa cqlppcfqke
      181 sdkllsdakt ealhafsnrs pvricvpptk iassplteeq ktkeqntkat gklpmakpss
      241 tlgksnsltt ekpkqgkrts istkrdlnsm gssediisdk ssaasdvfes scsgssssed
      301 kknlpapskp glkkithlkl pgvasgltrk ttsslssvss mdpslssslp isptgkngks
      361 smpskvsvsg srlssssssl alvkptrvss lpsanteksr kqarssstpt tfnaaslaks
      421 sasvtsseav gsgiqrlssv hslqklcqqn kdgsatkgsl cpkprarvls vpasqtkvlg
      481 ktgdtppkks apkatsslgl tfcgtlgsam avstpvkase drisqnssfr mksvsmtpas
      541 lkrsglptpi rrisgfpavt pkttprmafs phaasicqss sfstkktlta gskrtkektq
      601 itsseddisp ppllplalnf spekattgvv enelkeaevq nqlaeekqte allvdigvgk
      661 sllhtleces rplldlsntp evnkitplkp vfsaqvklid lssplitlsp dvnqenldsp
      721 likf
//
LOCUS       XP_053912889             724 aa            linear   VRT 09-MAR-2023
DEFINITION  G2 and S phase-expressed protein 1 [Cuculus canorus].
ACCESSION   XP_053912889
VERSION     XP_053912889.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056914.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..724
                     /product="G2 and S phase-expressed protein 1"
                     /calculated_mol_wt=77245
     Region          30..168
                     /region_name="GTSE1_N"
                     /note="G-2 and S-phase expressed 1; pfam15259"
                     /db_xref="CDD:464599"
     Region          650..704
                     /region_name="GTSE1_CTD"
                     /note="C-terminal domain of G2 and S phase-expressed
                     protein 1; cd21864"
                     /db_xref="CDD:412061"
     Site            order(653..656,673..676,698..701)
                     /site_type="other"
                     /note="clathrin box motifs"
                     /db_xref="CDD:412061"
     Site            order(670..676,693..695,698..701,703)
                     /site_type="other"
                     /note="clathrin binding site [polypeptide binding]"
                     /db_xref="CDD:412061"
     CDS             1..724
                     /gene="GTSE1"
                     /coded_by="XM_054056914.1:216..2390"
                     /db_xref="GeneID:104056059"
ORIGIN      
        1 meegkemaac cssneteekt sihmsnvsdl illcdekfdf dlslspasgn edevfigplg
       61 hkekciavni eakknaeekt vsvcdekwsp ltgeklveif kearllalqi etgskkeqte
      121 isqseeqenk iiekfveese sklkilrnqn iknspravkr etycvwdspa cqlppcfqke
      181 sdkllsdakt ealhafsnrs pvricvpptk iassplteeq ktkeqntkat gklpmakpss
      241 tlgksnsltt ekpkqgkrts istkrdlnsm gssediisdk ssaasdvfes scsgssssed
      301 kknlpapskp glkkithlkl pgvasgltrk ttsslssvss mdpslssslp isptgkngks
      361 smpskvsvsg srlssssssl alvkptrvss lpsanteksr kqarssstpt tfnaaslaks
      421 sasvtsseav gsgiqrlssv hslqklcqqn kdgsatkgsl cpkprarvls vpasqtkvlg
      481 ktgdtppkks apkatsslgl tfcgtlgsam avstpvkase drisqnssfr mksvsmtpas
      541 lkrsglptpi rrisgfpavt pkttprmafs phaasicqss sfstkktlta gskrtkektq
      601 itsseddisp ppllplalnf spekattgvv enelkeaevq nqlaeekqte allvdigvgk
      661 sllhtleces rplldlsntp evnkitplkp vfsaqvklid lssplitlsp dvnqenldsp
      721 likf
//
LOCUS       XP_053912890             196 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane 4 L6 family member 1 [Cuculus canorus].
ACCESSION   XP_053912890
VERSION     XP_053912890.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056915.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..196
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..196
                     /product="transmembrane 4 L6 family member 1"
                     /calculated_mol_wt=20929
     Region          1..186
                     /region_name="L6_membrane"
                     /note="L6 membrane protein; pfam05805"
                     /db_xref="CDD:461745"
     CDS             1..196
                     /gene="LOC104064089"
                     /coded_by="XM_054056915.1:147..737"
                     /db_xref="GeneID:104064089"
ORIGIN      
        1 mctgkcskci gitllplaac aivsnillyf pngqvlqlse itdlvwffhg ilgagilvil
       61 pafmmlgagg arccanrcgm llsvilsllg faggaycavi stlgliagpl cdtgdgeyly
      121 pfrndtledn ylfnqttwni ckepeniilw ntilfsilla igvieailcf iqviggltgf
      181 icgtcmrrrk tnisgm
//
LOCUS       XP_009564675             196 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane 4 L6 family member 1 [Cuculus canorus].
ACCESSION   XP_009564675
VERSION     XP_009564675.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566380.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..196
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..196
                     /product="transmembrane 4 L6 family member 1"
                     /calculated_mol_wt=20929
     Region          1..186
                     /region_name="L6_membrane"
                     /note="L6 membrane protein; pfam05805"
                     /db_xref="CDD:461745"
     CDS             1..196
                     /gene="LOC104064089"
                     /coded_by="XM_009566380.2:140..730"
                     /db_xref="GeneID:104064089"
ORIGIN      
        1 mctgkcskci gitllplaac aivsnillyf pngqvlqlse itdlvwffhg ilgagilvil
       61 pafmmlgagg arccanrcgm llsvilsllg faggaycavi stlgliagpl cdtgdgeyly
      121 pfrndtledn ylfnqttwni ckepeniilw ntilfsilla igvieailcf iqviggltgf
      181 icgtcmrrrk tnisgm
//
LOCUS       XP_009561671             419 aa            linear   VRT 09-MAR-2023
DEFINITION  carboxypeptidase A2 isoform X1 [Cuculus canorus].
ACCESSION   XP_009561671
VERSION     XP_009561671.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563376.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009561671.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..419
                     /product="carboxypeptidase A2 isoform X1"
                     /calculated_mol_wt=47025
     Region          26..100
                     /region_name="Propep_M14"
                     /note="Carboxypeptidase activation peptide; pfam02244"
                     /db_xref="CDD:460505"
     Region          117..417
                     /region_name="M14_CPA"
                     /note="Peptidase M14 carboxypeptidase subfamily A/B-like;
                     Carboxypeptidase A subgroup; cd03870"
                     /db_xref="CDD:349442"
     Site            order(179,182,237,254..255,306,358,360,380)
                     /site_type="active"
                     /db_xref="CDD:349442"
     Site            order(181..182,237,273,306..308,349,354,356..359,380,389)
                     /site_type="active"
                     /note="inhibitor binding interface [active]"
                     /db_xref="CDD:349442"
     CDS             1..419
                     /gene="LOC104061434"
                     /coded_by="XM_009563376.2:267..1526"
                     /db_xref="GeneID:104061434"
ORIGIN      
        1 mklilifsal fgaswcletf fghqvlrikt rneeevkklq vleslehlkl dfwinpstss
       61 lpvdvripan siqavkafle scgieysili edlqvvldke kqdmacgqqr ertrntfnyg
      121 ayhslddiya qldnlasefn nivskirige syekrplyvl kfgtggsnrp aiwldagihs
      181 rewvtqasai wiaqkiasdy gkdpsvtsll nkmdifllpv anpdgyvfth tknrmwrktr
      241 sknrgslcig vdpnrnwdag fggpgassnp csdsyhgpsa nsevevrsiv dfiknhgniq
      301 afltlhsysq llmypygykc mepadyaeld tvgkaaassi rslygttfkv gsicttiyqa
      361 sggsidwsyd ygikysfafe lrdtgrygfl lpanqiipta eetwlglkti mehvrdnpy
//
LOCUS       XP_053912892             402 aa            linear   VRT 09-MAR-2023
DEFINITION  carboxypeptidase A2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912892
VERSION     XP_053912892.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056917.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..402
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..402
                     /product="carboxypeptidase A2 isoform X2"
                     /calculated_mol_wt=45184
     Region          9..83
                     /region_name="Propep_M14"
                     /note="Carboxypeptidase activation peptide; pfam02244"
                     /db_xref="CDD:460505"
     Region          100..400
                     /region_name="M14_CPA"
                     /note="Peptidase M14 carboxypeptidase subfamily A/B-like;
                     Carboxypeptidase A subgroup; cd03870"
                     /db_xref="CDD:349442"
     Site            order(162,165,220,237..238,289,341,343,363)
                     /site_type="active"
                     /db_xref="CDD:349442"
     Site            order(164..165,220,256,289..291,332,337,339..342,363,372)
                     /site_type="active"
                     /note="inhibitor binding interface [active]"
                     /db_xref="CDD:349442"
     CDS             1..402
                     /gene="LOC104061434"
                     /coded_by="XM_054056917.1:231..1439"
                     /db_xref="GeneID:104061434"
ORIGIN      
        1 mcclwhqvlr iktrneeevk klqvlesleh lkldfwinps tsslpvdvri pansiqavka
       61 flescgieys iliedlqvvl dkekqdmacg qqrertrntf nygayhsldd iyaqldnlas
      121 efnnivskir igesyekrpl yvlkfgtggs nrpaiwldag ihsrewvtqa saiwiaqkia
      181 sdygkdpsvt sllnkmdifl lpvanpdgyv fthtknrmwr ktrsknrgsl cigvdpnrnw
      241 dagfggpgas snpcsdsyhg psansevevr sivdfiknhg niqafltlhs ysqllmypyg
      301 ykcmepadya eldtvgkaaa ssirslygtt fkvgsictti yqasggsidw sydygikysf
      361 afelrdtgry gfllpanqii ptaeetwlgl ktimehvrdn py
//
LOCUS       XP_053912893             591 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat and SOCS box protein 15 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912893
VERSION     XP_053912893.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056918.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..591
                     /product="ankyrin repeat and SOCS box protein 15 isoform
                     X1"
                     /calculated_mol_wt=65719
     Region          71..299
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          78..111
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          113..144
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          147..177
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          165..>443
                     /region_name="PHA03100"
                     /note="ankyrin repeat protein; Provisional; cl39094"
                     /db_xref="CDD:476869"
     Site            order(181,185..186,189..191,193..194,198,201,210,212,214,
                     218..219,222..224,226..227,231,234,243,245,247,251..252,
                     255..257,259..260,264,267,276)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          181..210
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          212..243
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          245..276
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(310,312,316..317,320..322,324..325,329,332,350,352,
                     354,358..359,362..364,366..367,371,374,382,384,388..389,
                     392..394,396..397,401,404)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          310..350
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          352..382
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          384..410
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          416..448
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          535..590
                     /region_name="SOCS"
                     /note="SOCS (suppressors of cytokine signaling) box. The
                     SOCS box is found in the C-terminal region of CIS/SOCS
                     family proteins (in combination with a SH2 domain), ASBs
                     (ankyrin repeat-containing proteins with a SOCS box), SSBs
                     (SPRY domain-containing proteins...; cl02533"
                     /db_xref="CDD:470605"
     Site            order(536..541,547,560,566)
                     /site_type="active"
                     /note="elongin B/C interaction [active]"
                     /db_xref="CDD:239641"
     CDS             1..591
                     /gene="ASB15"
                     /coded_by="XM_054056918.1:197..1972"
                     /db_xref="GeneID:104061616"
ORIGIN      
        1 mmderedlve dlltdyaiql siqesngakp amsssyndsf vppseenrki vtaikqgqvf
       61 glqelvkqky aldeadergw fplheaaaqp iqqilevild asyktmweyk tsdgetpltl
      121 aakagflenv rtllekgvwp nttndkgetp lliairkgsf emvstlikhn csihqpcvkr
      181 wsamheaakq grkdivavll knggnvnlkd gygvtplgva aeyghcdvle hlihkggdvq
      241 aladdgasil fdaagggnpd ciallleygg sgnvpnkagl lpihkaayeg hflalkylip
      301 vtsqnairks glspvhsaad gqnsqclell iengfdvntl laehisnsyd derktalyfa
      361 vsnndilcte illkaganpn kdplncllva vragnheivr lllsyganvn cyfmmvndth
      421 fpsaiqyaln devmlrllln hgynvgmcfd cmhqdifgns fvwstpedei lpgwtssvik
      481 dnpfcdfiav pwlqhlagkv vrvlidymdy vplctkikyv letqkewtei rqildnprpl
      541 khlcrlkirk llglrrlqkl ssmkkfplpp ilknyilyke ydlygkgisl e
//
LOCUS       XP_009561867             591 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat and SOCS box protein 15 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009561867
VERSION     XP_009561867.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009563572.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..591
                     /product="ankyrin repeat and SOCS box protein 15 isoform
                     X1"
                     /calculated_mol_wt=65719
     Region          71..299
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          78..111
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          113..144
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          147..177
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          165..>443
                     /region_name="PHA03100"
                     /note="ankyrin repeat protein; Provisional; cl39094"
                     /db_xref="CDD:476869"
     Site            order(181,185..186,189..191,193..194,198,201,210,212,214,
                     218..219,222..224,226..227,231,234,243,245,247,251..252,
                     255..257,259..260,264,267,276)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          181..210
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          212..243
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          245..276
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(310,312,316..317,320..322,324..325,329,332,350,352,
                     354,358..359,362..364,366..367,371,374,382,384,388..389,
                     392..394,396..397,401,404)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          310..350
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          352..382
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          384..410
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          416..448
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          535..590
                     /region_name="SOCS"
                     /note="SOCS (suppressors of cytokine signaling) box. The
                     SOCS box is found in the C-terminal region of CIS/SOCS
                     family proteins (in combination with a SH2 domain), ASBs
                     (ankyrin repeat-containing proteins with a SOCS box), SSBs
                     (SPRY domain-containing proteins...; cl02533"
                     /db_xref="CDD:470605"
     Site            order(536..541,547,560,566)
                     /site_type="active"
                     /note="elongin B/C interaction [active]"
                     /db_xref="CDD:239641"
     CDS             1..591
                     /gene="ASB15"
                     /coded_by="XM_009563572.2:105..1880"
                     /db_xref="GeneID:104061616"
ORIGIN      
        1 mmderedlve dlltdyaiql siqesngakp amsssyndsf vppseenrki vtaikqgqvf
       61 glqelvkqky aldeadergw fplheaaaqp iqqilevild asyktmweyk tsdgetpltl
      121 aakagflenv rtllekgvwp nttndkgetp lliairkgsf emvstlikhn csihqpcvkr
      181 wsamheaakq grkdivavll knggnvnlkd gygvtplgva aeyghcdvle hlihkggdvq
      241 aladdgasil fdaagggnpd ciallleygg sgnvpnkagl lpihkaayeg hflalkylip
      301 vtsqnairks glspvhsaad gqnsqclell iengfdvntl laehisnsyd derktalyfa
      361 vsnndilcte illkaganpn kdplncllva vragnheivr lllsyganvn cyfmmvndth
      421 fpsaiqyaln devmlrllln hgynvgmcfd cmhqdifgns fvwstpedei lpgwtssvik
      481 dnpfcdfiav pwlqhlagkv vrvlidymdy vplctkikyv letqkewtei rqildnprpl
      541 khlcrlkirk llglrrlqkl ssmkkfplpp ilknyilyke ydlygkgisl e
//
LOCUS       XP_053912894             571 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat and SOCS box protein 15 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912894
VERSION     XP_053912894.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056919.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..571
                     /product="ankyrin repeat and SOCS box protein 15 isoform
                     X2"
                     /calculated_mol_wt=63557
     Region          51..279
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          58..91
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          93..124
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          127..157
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(161,165..166,169..171,173..174,178,181,190,192,194,
                     198..199,202..204,206..207,211,214,223,225,227,231..232,
                     235..237,239..240,244,247,256)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          161..190
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          <164..>425
                     /region_name="PHA02876"
                     /note="ankyrin repeat protein; Provisional"
                     /db_xref="CDD:165207"
     Region          192..223
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          225..256
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(290,292,296..297,300..302,304..305,309,312,330,332,
                     334,338..339,342..344,346..347,351,354,362,364,368..369,
                     372..374,376..377,381,384)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          290..330
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          332..362
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          364..390
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          396..428
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          515..570
                     /region_name="SOCS"
                     /note="SOCS (suppressors of cytokine signaling) box. The
                     SOCS box is found in the C-terminal region of CIS/SOCS
                     family proteins (in combination with a SH2 domain), ASBs
                     (ankyrin repeat-containing proteins with a SOCS box), SSBs
                     (SPRY domain-containing proteins...; cl02533"
                     /db_xref="CDD:470605"
     Site            order(516..521,527,540,546)
                     /site_type="active"
                     /note="elongin B/C interaction [active]"
                     /db_xref="CDD:239641"
     CDS             1..571
                     /gene="ASB15"
                     /coded_by="XM_054056919.1:204..1919"
                     /db_xref="GeneID:104061616"
ORIGIN      
        1 mkekiwlkic slimpyslaf ksqmgpnqqc lpaimtgqvf glqelvkqky aldeadergw
       61 fplheaaaqp iqqilevild asyktmweyk tsdgetpltl aakagflenv rtllekgvwp
      121 nttndkgetp lliairkgsf emvstlikhn csihqpcvkr wsamheaakq grkdivavll
      181 knggnvnlkd gygvtplgva aeyghcdvle hlihkggdvq aladdgasil fdaagggnpd
      241 ciallleygg sgnvpnkagl lpihkaayeg hflalkylip vtsqnairks glspvhsaad
      301 gqnsqclell iengfdvntl laehisnsyd derktalyfa vsnndilcte illkaganpn
      361 kdplncllva vragnheivr lllsyganvn cyfmmvndth fpsaiqyaln devmlrllln
      421 hgynvgmcfd cmhqdifgns fvwstpedei lpgwtssvik dnpfcdfiav pwlqhlagkv
      481 vrvlidymdy vplctkikyv letqkewtei rqildnprpl khlcrlkirk llglrrlqkl
      541 ssmkkfplpp ilknyilyke ydlygkgisl e
//
LOCUS       XP_053912895             126 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily E member 1 [Cuculus
            canorus].
ACCESSION   XP_053912895
VERSION     XP_053912895.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056920.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..126
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..126
                     /product="potassium voltage-gated channel subfamily E
                     member 1"
                     /calculated_mol_wt=14248
     Region          2..124
                     /region_name="ISK_Channel"
                     /note="Slow voltage-gated potassium channel; pfam02060"
                     /db_xref="CDD:460432"
     CDS             1..126
                     /gene="KCNE1"
                     /coded_by="XM_054056920.1:276..656"
                     /db_xref="GeneID:104064747"
ORIGIN      
        1 mlvlsndtal nsllskllqd hlehtnssap sqvrsassdl eiiyvllmig lfgfftvgvm
       61 ltnirarkre dsqdpyttyi atdiwrkkdr eyfqaklien yklccvfenq vaveqpsmqi
      121 peakss
//
LOCUS       XP_053912897             126 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily E member 1 [Cuculus
            canorus].
ACCESSION   XP_053912897
VERSION     XP_053912897.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056922.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..126
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..126
                     /product="potassium voltage-gated channel subfamily E
                     member 1"
                     /calculated_mol_wt=14248
     Region          2..124
                     /region_name="ISK_Channel"
                     /note="Slow voltage-gated potassium channel; pfam02060"
                     /db_xref="CDD:460432"
     CDS             1..126
                     /gene="KCNE1"
                     /coded_by="XM_054056922.1:149..529"
                     /db_xref="GeneID:104064747"
ORIGIN      
        1 mlvlsndtal nsllskllqd hlehtnssap sqvrsassdl eiiyvllmig lfgfftvgvm
       61 ltnirarkre dsqdpyttyi atdiwrkkdr eyfqaklien yklccvfenq vaveqpsmqi
      121 peakss
//
LOCUS       XP_053912898             126 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily E member 1 [Cuculus
            canorus].
ACCESSION   XP_053912898
VERSION     XP_053912898.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056923.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..126
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..126
                     /product="potassium voltage-gated channel subfamily E
                     member 1"
                     /calculated_mol_wt=14248
     Region          2..124
                     /region_name="ISK_Channel"
                     /note="Slow voltage-gated potassium channel; pfam02060"
                     /db_xref="CDD:460432"
     CDS             1..126
                     /gene="KCNE1"
                     /coded_by="XM_054056923.1:155..535"
                     /db_xref="GeneID:104064747"
ORIGIN      
        1 mlvlsndtal nsllskllqd hlehtnssap sqvrsassdl eiiyvllmig lfgfftvgvm
       61 ltnirarkre dsqdpyttyi atdiwrkkdr eyfqaklien yklccvfenq vaveqpsmqi
      121 peakss
//
LOCUS       XP_053912899             126 aa            linear   VRT 09-MAR-2023
DEFINITION  potassium voltage-gated channel subfamily E member 1 [Cuculus
            canorus].
ACCESSION   XP_053912899
VERSION     XP_053912899.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056924.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..126
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..126
                     /product="potassium voltage-gated channel subfamily E
                     member 1"
                     /calculated_mol_wt=14248
     Region          2..124
                     /region_name="ISK_Channel"
                     /note="Slow voltage-gated potassium channel; pfam02060"
                     /db_xref="CDD:460432"
     CDS             1..126
                     /gene="KCNE1"
                     /coded_by="XM_054056924.1:93..473"
                     /db_xref="GeneID:104064747"
ORIGIN      
        1 mlvlsndtal nsllskllqd hlehtnssap sqvrsassdl eiiyvllmig lfgfftvgvm
       61 ltnirarkre dsqdpyttyi atdiwrkkdr eyfqaklien yklccvfenq vaveqpsmqi
      121 peakss
//
LOCUS       XP_053912900            1474 aa            linear   VRT 09-MAR-2023
DEFINITION  lysine-specific demethylase 6A isoform X1 [Cuculus canorus].
ACCESSION   XP_053912900
VERSION     XP_053912900.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056925.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1474
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1474
                     /product="lysine-specific demethylase 6A isoform X1"
                     /calculated_mol_wt=162605
     Region          92..120
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(93,96..97,100..101,103,130,133..134,137..138,
                     140..141,164,170..171,174..175,178)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          97..377
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          128..158
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          163..193
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          204..232
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          242..277
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(284,287..288,291..292,294,318,321..322,325..326,
                     328..329,352,355..356,359..360,363)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          284..311
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          316..346
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          351..377
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          <620..>945
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1150..1214
                     /region_name="JmjC"
                     /note="A domain family that is part of the cupin
                     metalloenzyme superfamily; smart00558"
                     /db_xref="CDD:214721"
     Region          1184..1292
                     /region_name="JmjC"
                     /note="JmjC domain, hydroxylase; pfam02373"
                     /db_xref="CDD:396791"
     CDS             1..1474
                     /gene="KDM6A"
                     /coded_by="XM_054056925.1:38..4462"
                     /db_xref="GeneID:104059249"
ORIGIN      
        1 mkscgvslaa aasaapfgde ekkmaagkas gqseedfasl taeerealsg ldsrlfgflr
       61 lhedgartka lllkavrcye slilkaegkv esdffcqlgh fnllledypk alsayqryys
      121 lqsdywknaa flyglglvyf hynafqwaik afqealyvdp sfcrakeihl rlglmfkvnt
      181 dyesslkhfq lalidcnpct lsnaeiqfhi ahlyeiqrky hsakeayeql lqienlpaqv
      241 katvlqqlgw mhhtvdqlgd katkesyaiq ylqksleadp nsgqswyflg rcyssigkvq
      301 dafisyrqsi dkseasadtw csigvlyqqq nqpmdalqay icavqldhgh aaawmdlgtl
      361 yescnqpqda ikcylnatrs kncsntsala arikylqaql cnlpqgslqn ktkllpsiee
      421 awslpipael tsrqgamnta qqackphhpn tepvlgltqt pisqqslplh mipssqvddl
      481 tspakrkrts sptkntsdvw ssghtvshpp vqqqihswcl tpqklqhleq lranrnnlnp
      541 aqklmleqle sqfvlmqqhq qmrqtgvaqv rstgipngpt adsslptnsv sgqqpqvalt
      601 rvpnvaqrgi rpacpgqpma ngpfaagpvp cstartlsst dtilignnhi tesgsngnvp
      661 ylqrnalslp hnrtnltssa eepwknqlsn stqglhkgqs shlagpnger plsstgpsqh
      721 lqaagtgiqn qnghpatpsn svtqgaalnh lsshtatsgg qqgitltkes kpsgntsavp
      781 etsrhsgetp nstasveglp nhvhqvtada vsspshgdsk spgllssdnp qlsallmgka
      841 nnnvgtgtcd kvnnihpavh tktensvass pssaistatp spksteqttt nsvtslnsph
      901 sghtvngegl edsqspmkad pppvshkpsp qiipsmsvsi ypssaevlka crnlgkngls
      961 sssilldkcp pprpppppyp plpkdklnpp tpsiylenkr daffpplhqf ctnpnnpvtv
     1021 irglagalkl dlglfstktl veannehive vrtqllqpad enwdptgtkk iwrcessrsh
     1081 ttiakyaqyq assfqeslre enekkshhkd hsdnestssd nsgrrrrgpf ktikfgtnid
     1141 lsddkkwklq lheltklpaf vrvvsagnll shvghtilgm ntvqlymkvp gsrtpghqen
     1201 nnfcsvnini gpgdcewfvv pesywgvmnd fceknnmnfl mgswwpnled lyeanvpvyr
     1261 fiqrpgdlvw inagtvhwvq aigwcnniaw nvgpltacqy klaveryewn klqsvksivp
     1321 mvhlswnmar nikvsdpklf emikycllrt lkqcqtlrea liaagkeivw hgrakdepah
     1381 ycsicevevf dllfvtnesn srktyvvhcq dcarkistnl enfvvleqyk medlmqvydq
     1441 ftlvsqinkw vhkyiickav vdclstplye ycgl
//
LOCUS       XP_053912901            1461 aa            linear   VRT 09-MAR-2023
DEFINITION  lysine-specific demethylase 6A isoform X2 [Cuculus canorus].
ACCESSION   XP_053912901
VERSION     XP_053912901.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056926.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1461
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1461
                     /product="lysine-specific demethylase 6A isoform X2"
                     /calculated_mol_wt=161386
     Region          92..120
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(93,96..97,100..101,103,130,133..134,137..138,
                     140..141,164,170..171,174..175,178)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          97..377
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          128..158
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          163..193
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          204..232
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          242..277
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(284,287..288,291..292,294,318,321..322,325..326,
                     328..329,352,355..356,359..360,363)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          284..311
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          316..346
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          351..377
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          <620..>945
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1150..1214
                     /region_name="JmjC"
                     /note="A domain family that is part of the cupin
                     metalloenzyme superfamily; smart00558"
                     /db_xref="CDD:214721"
     Region          1184..1292
                     /region_name="JmjC"
                     /note="JmjC domain, hydroxylase; pfam02373"
                     /db_xref="CDD:396791"
     CDS             1..1461
                     /gene="KDM6A"
                     /coded_by="XM_054056926.1:38..4423"
                     /db_xref="GeneID:104059249"
ORIGIN      
        1 mkscgvslaa aasaapfgde ekkmaagkas gqseedfasl taeerealsg ldsrlfgflr
       61 lhedgartka lllkavrcye slilkaegkv esdffcqlgh fnllledypk alsayqryys
      121 lqsdywknaa flyglglvyf hynafqwaik afqealyvdp sfcrakeihl rlglmfkvnt
      181 dyesslkhfq lalidcnpct lsnaeiqfhi ahlyeiqrky hsakeayeql lqienlpaqv
      241 katvlqqlgw mhhtvdqlgd katkesyaiq ylqksleadp nsgqswyflg rcyssigkvq
      301 dafisyrqsi dkseasadtw csigvlyqqq nqpmdalqay icavqldhgh aaawmdlgtl
      361 yescnqpqda ikcylnatrs kncsntsala arikylqaql cnlpqgslqn ktkllpsiee
      421 awslpipael tsrqgamnta qqackphhpn tepvlgltqt pisqqslplh mipssqvddl
      481 tspakrkrts sptkntsdvw ssghtvshpp vqqqihswcl tpqklqhleq lranrnnlnp
      541 aqklmleqle sqfvlmqqhq qmrqtgvaqv rstgipngpt adsslptnsv sgqqpqvalt
      601 rvpnvaqrgi rpacpgqpma ngpfaagpvp cstartlsst dtilignnhi tesgsngnvp
      661 ylqrnalslp hnrtnltssa eepwknqlsn stqglhkgqs shlagpnger plsstgpsqh
      721 lqaagtgiqn qnghpatpsn svtqgaalnh lsshtatsgg qqgitltkes kpsgntsavp
      781 etsrhsgetp nstasveglp nhvhqvtada vsspshgdsk spgllssdnp qlsallmgka
      841 nnnvgtgtcd kvnnihpavh tktensvass pssaistatp spksteqttt nsvtslnsph
      901 sghtvngegl edsqspmkad pppvshkpsp qiipsmsvsi ypssaevlka crnlgkngls
      961 sssilldkcp pprpppppyp plpkdklnpp tpsiylenkr daffpplhqf ctnpnnpvtv
     1021 irglagalkl dlglfstktl veannehive vrtqllqpad enwdptgtkk iwrcessrsh
     1081 ttiakyaqyq assfqeslre enekkshhkd hsdnestssd nsgrrrrgpf ktikfgtnid
     1141 lsddkkwklq lheltklpaf vrvvsagnll shvghtilgm ntvqlymkvp gsrtpghqen
     1201 nnfcsvnini gpgdcewfvv pesywgvmnd fceknnmnfl mgswwpnled lyeanvpvyr
     1261 fiqrpgdlvw inagtvhwvq aigwcnniaw nvgpltacqy klaveryewn klqsvksivp
     1321 mvhlswnmar nikvsdpklf emikycllrt lkqcqtlrea liaagkeivw hgrakdepah
     1381 ycsicevevf dllfvtnesn srktyvvhcq dcarkistnl enfvvleqyk medlmqvydq
     1441 ftlrspedhn wirwrweesg q
//
LOCUS       XP_053912902            1452 aa            linear   VRT 09-MAR-2023
DEFINITION  lysine-specific demethylase 6A isoform X3 [Cuculus canorus].
ACCESSION   XP_053912902
VERSION     XP_053912902.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056927.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1452
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1452
                     /product="lysine-specific demethylase 6A isoform X3"
                     /calculated_mol_wt=159860
     Region          92..120
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(93,96..97,100..101,103,130,133..134,137..138,
                     140..141,164,170..171,174..175,178)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          97..377
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          128..158
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          163..193
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          204..232
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          242..277
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(284,287..288,291..292,294,318,321..322,325..326,
                     328..329,352,355..356,359..360,363)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          284..311
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          316..346
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          351..377
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          <620..>945
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1150..1214
                     /region_name="JmjC"
                     /note="A domain family that is part of the cupin
                     metalloenzyme superfamily; smart00558"
                     /db_xref="CDD:214721"
     Region          1184..1292
                     /region_name="JmjC"
                     /note="JmjC domain, hydroxylase; pfam02373"
                     /db_xref="CDD:396791"
     CDS             1..1452
                     /gene="KDM6A"
                     /coded_by="XM_054056927.1:38..4396"
                     /db_xref="GeneID:104059249"
ORIGIN      
        1 mkscgvslaa aasaapfgde ekkmaagkas gqseedfasl taeerealsg ldsrlfgflr
       61 lhedgartka lllkavrcye slilkaegkv esdffcqlgh fnllledypk alsayqryys
      121 lqsdywknaa flyglglvyf hynafqwaik afqealyvdp sfcrakeihl rlglmfkvnt
      181 dyesslkhfq lalidcnpct lsnaeiqfhi ahlyeiqrky hsakeayeql lqienlpaqv
      241 katvlqqlgw mhhtvdqlgd katkesyaiq ylqksleadp nsgqswyflg rcyssigkvq
      301 dafisyrqsi dkseasadtw csigvlyqqq nqpmdalqay icavqldhgh aaawmdlgtl
      361 yescnqpqda ikcylnatrs kncsntsala arikylqaql cnlpqgslqn ktkllpsiee
      421 awslpipael tsrqgamnta qqackphhpn tepvlgltqt pisqqslplh mipssqvddl
      481 tspakrkrts sptkntsdvw ssghtvshpp vqqqihswcl tpqklqhleq lranrnnlnp
      541 aqklmleqle sqfvlmqqhq qmrqtgvaqv rstgipngpt adsslptnsv sgqqpqvalt
      601 rvpnvaqrgi rpacpgqpma ngpfaagpvp cstartlsst dtilignnhi tesgsngnvp
      661 ylqrnalslp hnrtnltssa eepwknqlsn stqglhkgqs shlagpnger plsstgpsqh
      721 lqaagtgiqn qnghpatpsn svtqgaalnh lsshtatsgg qqgitltkes kpsgntsavp
      781 etsrhsgetp nstasveglp nhvhqvtada vsspshgdsk spgllssdnp qlsallmgka
      841 nnnvgtgtcd kvnnihpavh tktensvass pssaistatp spksteqttt nsvtslnsph
      901 sghtvngegl edsqspmkad pppvshkpsp qiipsmsvsi ypssaevlka crnlgkngls
      961 sssilldkcp pprpppppyp plpkdklnpp tpsiylenkr daffpplhqf ctnpnnpvtv
     1021 irglagalkl dlglfstktl veannehive vrtqllqpad enwdptgtkk iwrcessrsh
     1081 ttiakyaqyq assfqeslre enekkshhkd hsdnestssd nsgrrrrgpf ktikfgtnid
     1141 lsddkkwklq lheltklpaf vrvvsagnll shvghtilgm ntvqlymkvp gsrtpghqen
     1201 nnfcsvnini gpgdcewfvv pesywgvmnd fceknnmnfl mgswwpnled lyeanvpvyr
     1261 fiqrpgdlvw inagtvhwvq aigwcnniaw nvgpltacqy klaveryewn klqsvksivp
     1321 mvhlswnmar nikvsdpklf emikycllrt lkqcqtlrea liaagkeivw hgrakdepah
     1381 ycsicevevf dllfvtnesn srktyvvhcq dcarkistnl enfvvleqyk medlmqvydq
     1441 ftlapplpss ss
//
LOCUS       XP_053912903            1416 aa            linear   VRT 09-MAR-2023
DEFINITION  lysine-specific demethylase 6A isoform X4 [Cuculus canorus].
ACCESSION   XP_053912903
VERSION     XP_053912903.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056928.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1416
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1416
                     /product="lysine-specific demethylase 6A isoform X4"
                     /calculated_mol_wt=156527
     Region          92..120
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(93,96..97,100..101,103,130,133..134,137..138,
                     140..141,164,170..171,174..175,178)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          97..377
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          128..158
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          163..193
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          204..232
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          242..277
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(284,287..288,291..292,294,318,321..322,325..326,
                     328..329,352,355..356,359..360,363)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          284..311
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          316..346
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          351..377
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          <575..>900
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1105..1169
                     /region_name="JmjC"
                     /note="A domain family that is part of the cupin
                     metalloenzyme superfamily; smart00558"
                     /db_xref="CDD:214721"
     Region          1139..1247
                     /region_name="JmjC"
                     /note="JmjC domain, hydroxylase; pfam02373"
                     /db_xref="CDD:396791"
     CDS             1..1416
                     /gene="KDM6A"
                     /coded_by="XM_054056928.1:38..4288"
                     /db_xref="GeneID:104059249"
ORIGIN      
        1 mkscgvslaa aasaapfgde ekkmaagkas gqseedfasl taeerealsg ldsrlfgflr
       61 lhedgartka lllkavrcye slilkaegkv esdffcqlgh fnllledypk alsayqryys
      121 lqsdywknaa flyglglvyf hynafqwaik afqealyvdp sfcrakeihl rlglmfkvnt
      181 dyesslkhfq lalidcnpct lsnaeiqfhi ahlyeiqrky hsakeayeql lqienlpaqv
      241 katvlqqlgw mhhtvdqlgd katkesyaiq ylqksleadp nsgqswyflg rcyssigkvq
      301 dafisyrqsi dkseasadtw csigvlyqqq nqpmdalqay icavqldhgh aaawmdlgtl
      361 yescnqpqda ikcylnatrs kncsntsala arikylqack phhpntepvl gltqtpisqq
      421 slplhmipss qvddltspak rkrtssptkn tsdvwssght vshppvqqqi hswcltpqkl
      481 qhleqlranr nnlnpaqklm leqlesqfvl mqqhqqmrqt gvaqvrstgi pngptadssl
      541 ptnsvsgqqp qvaltrvpnv aqrgirpacp gqpmangpfa agpvpcstar tlsstdtili
      601 gnnhitesgs ngnvpylqrn alslphnrtn ltssaeepwk nqlsnstqgl hkgqsshlag
      661 pngerplsst gpsqhlqaag tgiqnqnghp atpsnsvtqg aalnhlssht atsggqqgit
      721 ltkeskpsgn tsavpetsrh sgetpnstas veglpnhvhq vtadavssps hgdskspgll
      781 ssdnpqlsal lmgkannnvg tgtcdkvnni hpavhtkten svasspssai statpspkst
      841 eqtttnsvts lnsphsghtv ngegledsqs pmkadpppvs hkpspqiips msvsiypssa
      901 evlkacrnlg knglssssil ldkcppprpp pppypplpkd klnpptpsiy lenkrdaffp
      961 plhqfctnpn npvtvirgla galkldlglf stktlveann ehivevrtql lqpadenwdp
     1021 tgtkkiwrce ssrshttiak yaqyqassfq eslreenekk shhkdhsdne stssdnsgrr
     1081 rrgpfktikf gtnidlsddk kwklqlhelt klpafvrvvs agnllshvgh tilgmntvql
     1141 ymkvpgsrtp ghqennnfcs vninigpgdc ewfvvpesyw gvmndfcekn nmnflmgsww
     1201 pnledlyean vpvyrfiqrp gdlvwinagt vhwvqaigwc nniawnvgpl tacqyklave
     1261 ryewnklqsv ksivpmvhls wnmarnikvs dpklfemiky cllrtlkqcq tlrealiaag
     1321 keivwhgrak depahycsic evevfdllfv tnesnsrkty vvhcqdcark istnlenfvv
     1381 leqykmedlm qvydqftlrs pedhnwirwr weesgq
//
LOCUS       XP_053912904            1409 aa            linear   VRT 09-MAR-2023
DEFINITION  lysine-specific demethylase 6A isoform X5 [Cuculus canorus].
ACCESSION   XP_053912904
VERSION     XP_053912904.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056929.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1409
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1409
                     /product="lysine-specific demethylase 6A isoform X5"
                     /calculated_mol_wt=155747
     Region          92..120
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(93,96..97,100..101,103,130,133..134,137..138,
                     140..141,164,170..171,174..175,178)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          97..377
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          128..158
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          163..193
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          204..232
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          242..277
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(284,287..288,291..292,294,318,321..322,325..326,
                     328..329,352,355..356,359..360,363)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          284..311
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          316..346
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          351..377
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          <568..>893
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1098..1162
                     /region_name="JmjC"
                     /note="A domain family that is part of the cupin
                     metalloenzyme superfamily; smart00558"
                     /db_xref="CDD:214721"
     Region          1132..1240
                     /region_name="JmjC"
                     /note="JmjC domain, hydroxylase; pfam02373"
                     /db_xref="CDD:396791"
     CDS             1..1409
                     /gene="KDM6A"
                     /coded_by="XM_054056929.1:38..4267"
                     /db_xref="GeneID:104059249"
ORIGIN      
        1 mkscgvslaa aasaapfgde ekkmaagkas gqseedfasl taeerealsg ldsrlfgflr
       61 lhedgartka lllkavrcye slilkaegkv esdffcqlgh fnllledypk alsayqryys
      121 lqsdywknaa flyglglvyf hynafqwaik afqealyvdp sfcrakeihl rlglmfkvnt
      181 dyesslkhfq lalidcnpct lsnaeiqfhi ahlyeiqrky hsakeayeql lqienlpaqv
      241 katvlqqlgw mhhtvdqlgd katkesyaiq ylqksleadp nsgqswyflg rcyssigkvq
      301 dafisyrqsi dkseasadtw csigvlyqqq nqpmdalqay icavqldhgh aaawmdlgtl
      361 yescnqpqda ikcylnatrs kncsntsala arikylqaql cnlpqgslqn ktkllpsiee
      421 awslpipael tsrqgamnta qqntsdvwss ghtvshppvq qqihswcltp qklqhleqlr
      481 anrnnlnpaq klmleqlesq fvlmqqhqqm rqtgvaqvrs tgipngptad sslptnsvsg
      541 qqpqvaltrv pnvaqrgirp acpgqpmang pfaagpvpcs tartlsstdt ilignnhite
      601 sgsngnvpyl qrnalslphn rtnltssaee pwknqlsnst qglhkgqssh lagpngerpl
      661 sstgpsqhlq aagtgiqnqn ghpatpsnsv tqgaalnhls shtatsggqq gitltkeskp
      721 sgntsavpet srhsgetpns tasveglpnh vhqvtadavs spshgdsksp gllssdnpql
      781 sallmgkann nvgtgtcdkv nnihpavhtk tensvassps saistatpsp ksteqtttns
      841 vtslnsphsg htvngegled sqspmkadpp pvshkpspqi ipsmsvsiyp ssaevlkacr
      901 nlgknglsss silldkcppp rpppppyppl pkdklnpptp siylenkrda ffpplhqfct
      961 npnnpvtvir glagalkldl glfstktlve annehivevr tqllqpaden wdptgtkkiw
     1021 rcessrshtt iakyaqyqas sfqeslreen ekkshhkdhs dnestssdns grrrrgpfkt
     1081 ikfgtnidls ddkkwklqlh eltklpafvr vvsagnllsh vghtilgmnt vqlymkvpgs
     1141 rtpghqennn fcsvninigp gdcewfvvpe sywgvmndfc eknnmnflmg swwpnledly
     1201 eanvpvyrfi qrpgdlvwin agtvhwvqai gwcnniawnv gpltacqykl averyewnkl
     1261 qsvksivpmv hlswnmarni kvsdpklfem ikycllrtlk qcqtlreali aagkeivwhg
     1321 rakdepahyc sicevevfdl lfvtnesnsr ktyvvhcqdc arkistnlen fvvleqykme
     1381 dlmqvydqft lrspedhnwi rwrweesgq
//
LOCUS       XP_053912905            1407 aa            linear   VRT 09-MAR-2023
DEFINITION  lysine-specific demethylase 6A isoform X6 [Cuculus canorus].
ACCESSION   XP_053912905
VERSION     XP_053912905.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056930.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1407
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1407
                     /product="lysine-specific demethylase 6A isoform X6"
                     /calculated_mol_wt=155000
     Region          92..120
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(93,96..97,100..101,103,130,133..134,137..138,
                     140..141,164,170..171,174..175,178)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          97..377
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          128..158
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          163..193
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          204..232
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          242..277
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(284,287..288,291..292,294,318,321..322,325..326,
                     328..329,352,355..356,359..360,363)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          284..311
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          316..346
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          351..377
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          <575..>900
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1105..1169
                     /region_name="JmjC"
                     /note="A domain family that is part of the cupin
                     metalloenzyme superfamily; smart00558"
                     /db_xref="CDD:214721"
     Region          1139..1247
                     /region_name="JmjC"
                     /note="JmjC domain, hydroxylase; pfam02373"
                     /db_xref="CDD:396791"
     CDS             1..1407
                     /gene="KDM6A"
                     /coded_by="XM_054056930.1:38..4261"
                     /db_xref="GeneID:104059249"
ORIGIN      
        1 mkscgvslaa aasaapfgde ekkmaagkas gqseedfasl taeerealsg ldsrlfgflr
       61 lhedgartka lllkavrcye slilkaegkv esdffcqlgh fnllledypk alsayqryys
      121 lqsdywknaa flyglglvyf hynafqwaik afqealyvdp sfcrakeihl rlglmfkvnt
      181 dyesslkhfq lalidcnpct lsnaeiqfhi ahlyeiqrky hsakeayeql lqienlpaqv
      241 katvlqqlgw mhhtvdqlgd katkesyaiq ylqksleadp nsgqswyflg rcyssigkvq
      301 dafisyrqsi dkseasadtw csigvlyqqq nqpmdalqay icavqldhgh aaawmdlgtl
      361 yescnqpqda ikcylnatrs kncsntsala arikylqack phhpntepvl gltqtpisqq
      421 slplhmipss qvddltspak rkrtssptkn tsdvwssght vshppvqqqi hswcltpqkl
      481 qhleqlranr nnlnpaqklm leqlesqfvl mqqhqqmrqt gvaqvrstgi pngptadssl
      541 ptnsvsgqqp qvaltrvpnv aqrgirpacp gqpmangpfa agpvpcstar tlsstdtili
      601 gnnhitesgs ngnvpylqrn alslphnrtn ltssaeepwk nqlsnstqgl hkgqsshlag
      661 pngerplsst gpsqhlqaag tgiqnqnghp atpsnsvtqg aalnhlssht atsggqqgit
      721 ltkeskpsgn tsavpetsrh sgetpnstas veglpnhvhq vtadavssps hgdskspgll
      781 ssdnpqlsal lmgkannnvg tgtcdkvnni hpavhtkten svasspssai statpspkst
      841 eqtttnsvts lnsphsghtv ngegledsqs pmkadpppvs hkpspqiips msvsiypssa
      901 evlkacrnlg knglssssil ldkcppprpp pppypplpkd klnpptpsiy lenkrdaffp
      961 plhqfctnpn npvtvirgla galkldlglf stktlveann ehivevrtql lqpadenwdp
     1021 tgtkkiwrce ssrshttiak yaqyqassfq eslreenekk shhkdhsdne stssdnsgrr
     1081 rrgpfktikf gtnidlsddk kwklqlhelt klpafvrvvs agnllshvgh tilgmntvql
     1141 ymkvpgsrtp ghqennnfcs vninigpgdc ewfvvpesyw gvmndfcekn nmnflmgsww
     1201 pnledlyean vpvyrfiqrp gdlvwinagt vhwvqaigwc nniawnvgpl tacqyklave
     1261 ryewnklqsv ksivpmvhls wnmarnikvs dpklfemiky cllrtlkqcq tlrealiaag
     1321 keivwhgrak depahycsic evevfdllfv tnesnsrkty vvhcqdcark istnlenfvv
     1381 leqykmedlm qvydqftlap plpssss
//
LOCUS       XP_053912907            1400 aa            linear   VRT 09-MAR-2023
DEFINITION  lysine-specific demethylase 6A isoform X7 [Cuculus canorus].
ACCESSION   XP_053912907
VERSION     XP_053912907.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056932.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1400
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1400
                     /product="lysine-specific demethylase 6A isoform X7"
                     /calculated_mol_wt=154220
     Region          92..120
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(93,96..97,100..101,103,130,133..134,137..138,
                     140..141,164,170..171,174..175,178)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          97..377
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          128..158
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          163..193
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          204..232
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          242..277
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(284,287..288,291..292,294,318,321..322,325..326,
                     328..329,352,355..356,359..360,363)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          284..311
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          316..346
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          351..377
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          <568..>893
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1098..1162
                     /region_name="JmjC"
                     /note="A domain family that is part of the cupin
                     metalloenzyme superfamily; smart00558"
                     /db_xref="CDD:214721"
     Region          1132..1240
                     /region_name="JmjC"
                     /note="JmjC domain, hydroxylase; pfam02373"
                     /db_xref="CDD:396791"
     CDS             1..1400
                     /gene="KDM6A"
                     /coded_by="XM_054056932.1:38..4240"
                     /db_xref="GeneID:104059249"
ORIGIN      
        1 mkscgvslaa aasaapfgde ekkmaagkas gqseedfasl taeerealsg ldsrlfgflr
       61 lhedgartka lllkavrcye slilkaegkv esdffcqlgh fnllledypk alsayqryys
      121 lqsdywknaa flyglglvyf hynafqwaik afqealyvdp sfcrakeihl rlglmfkvnt
      181 dyesslkhfq lalidcnpct lsnaeiqfhi ahlyeiqrky hsakeayeql lqienlpaqv
      241 katvlqqlgw mhhtvdqlgd katkesyaiq ylqksleadp nsgqswyflg rcyssigkvq
      301 dafisyrqsi dkseasadtw csigvlyqqq nqpmdalqay icavqldhgh aaawmdlgtl
      361 yescnqpqda ikcylnatrs kncsntsala arikylqaql cnlpqgslqn ktkllpsiee
      421 awslpipael tsrqgamnta qqntsdvwss ghtvshppvq qqihswcltp qklqhleqlr
      481 anrnnlnpaq klmleqlesq fvlmqqhqqm rqtgvaqvrs tgipngptad sslptnsvsg
      541 qqpqvaltrv pnvaqrgirp acpgqpmang pfaagpvpcs tartlsstdt ilignnhite
      601 sgsngnvpyl qrnalslphn rtnltssaee pwknqlsnst qglhkgqssh lagpngerpl
      661 sstgpsqhlq aagtgiqnqn ghpatpsnsv tqgaalnhls shtatsggqq gitltkeskp
      721 sgntsavpet srhsgetpns tasveglpnh vhqvtadavs spshgdsksp gllssdnpql
      781 sallmgkann nvgtgtcdkv nnihpavhtk tensvassps saistatpsp ksteqtttns
      841 vtslnsphsg htvngegled sqspmkadpp pvshkpspqi ipsmsvsiyp ssaevlkacr
      901 nlgknglsss silldkcppp rpppppyppl pkdklnpptp siylenkrda ffpplhqfct
      961 npnnpvtvir glagalkldl glfstktlve annehivevr tqllqpaden wdptgtkkiw
     1021 rcessrshtt iakyaqyqas sfqeslreen ekkshhkdhs dnestssdns grrrrgpfkt
     1081 ikfgtnidls ddkkwklqlh eltklpafvr vvsagnllsh vghtilgmnt vqlymkvpgs
     1141 rtpghqennn fcsvninigp gdcewfvvpe sywgvmndfc eknnmnflmg swwpnledly
     1201 eanvpvyrfi qrpgdlvwin agtvhwvqai gwcnniawnv gpltacqykl averyewnkl
     1261 qsvksivpmv hlswnmarni kvsdpklfem ikycllrtlk qcqtlreali aagkeivwhg
     1321 rakdepahyc sicevevfdl lfvtnesnsr ktyvvhcqdc arkistnlen fvvleqykme
     1381 dlmqvydqft lapplpssss
//
LOCUS       XP_053912908            1364 aa            linear   VRT 09-MAR-2023
DEFINITION  lysine-specific demethylase 6A isoform X8 [Cuculus canorus].
ACCESSION   XP_053912908
VERSION     XP_053912908.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056933.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1364
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1364
                     /product="lysine-specific demethylase 6A isoform X8"
                     /calculated_mol_wt=150887
     Region          92..120
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(93,96..97,100..101,103,130,133..134,137..138,
                     140..141,164,170..171,174..175,178)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          97..377
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          128..158
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          163..193
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          204..232
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          242..277
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(284,287..288,291..292,294,318,321..322,325..326,
                     328..329,352,355..356,359..360,363)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          284..311
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          316..346
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          351..377
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          <523..>848
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1053..1117
                     /region_name="JmjC"
                     /note="A domain family that is part of the cupin
                     metalloenzyme superfamily; smart00558"
                     /db_xref="CDD:214721"
     Region          1087..1195
                     /region_name="JmjC"
                     /note="JmjC domain, hydroxylase; pfam02373"
                     /db_xref="CDD:396791"
     CDS             1..1364
                     /gene="KDM6A"
                     /coded_by="XM_054056933.1:38..4132"
                     /db_xref="GeneID:104059249"
ORIGIN      
        1 mkscgvslaa aasaapfgde ekkmaagkas gqseedfasl taeerealsg ldsrlfgflr
       61 lhedgartka lllkavrcye slilkaegkv esdffcqlgh fnllledypk alsayqryys
      121 lqsdywknaa flyglglvyf hynafqwaik afqealyvdp sfcrakeihl rlglmfkvnt
      181 dyesslkhfq lalidcnpct lsnaeiqfhi ahlyeiqrky hsakeayeql lqienlpaqv
      241 katvlqqlgw mhhtvdqlgd katkesyaiq ylqksleadp nsgqswyflg rcyssigkvq
      301 dafisyrqsi dkseasadtw csigvlyqqq nqpmdalqay icavqldhgh aaawmdlgtl
      361 yescnqpqda ikcylnatrs kncsntsala arikylqnts dvwssghtvs hppvqqqihs
      421 wcltpqklqh leqlranrnn lnpaqklmle qlesqfvlmq qhqqmrqtgv aqvrstgipn
      481 gptadsslpt nsvsgqqpqv altrvpnvaq rgirpacpgq pmangpfaag pvpcstartl
      541 sstdtilign nhitesgsng nvpylqrnal slphnrtnlt ssaeepwknq lsnstqglhk
      601 gqsshlagpn gerplsstgp sqhlqaagtg iqnqnghpat psnsvtqgaa lnhlsshtat
      661 sggqqgitlt keskpsgnts avpetsrhsg etpnstasve glpnhvhqvt adavsspshg
      721 dskspgllss dnpqlsallm gkannnvgtg tcdkvnnihp avhtktensv asspssaist
      781 atpspksteq tttnsvtsln sphsghtvng egledsqspm kadpppvshk pspqiipsms
      841 vsiypssaev lkacrnlgkn glssssilld kcppprpppp pypplpkdkl npptpsiyle
      901 nkrdaffppl hqfctnpnnp vtvirglaga lkldlglfst ktlveanneh ivevrtqllq
      961 padenwdptg tkkiwrcess rshttiakya qyqassfqes lreenekksh hkdhsdnest
     1021 ssdnsgrrrr gpfktikfgt nidlsddkkw klqlheltkl pafvrvvsag nllshvghti
     1081 lgmntvqlym kvpgsrtpgh qennnfcsvn inigpgdcew fvvpesywgv mndfceknnm
     1141 nflmgswwpn ledlyeanvp vyrfiqrpgd lvwinagtvh wvqaigwcnn iawnvgplta
     1201 cqyklavery ewnklqsvks ivpmvhlswn marnikvsdp klfemikycl lrtlkqcqtl
     1261 realiaagke ivwhgrakde pahycsicev evfdllfvtn esnsrktyvv hcqdcarkis
     1321 tnlenfvvle qykmedlmqv ydqftlrspe dhnwirwrwe esgq
//
LOCUS       XP_053912909            1355 aa            linear   VRT 09-MAR-2023
DEFINITION  lysine-specific demethylase 6A isoform X9 [Cuculus canorus].
ACCESSION   XP_053912909
VERSION     XP_053912909.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056934.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1355
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1355
                     /product="lysine-specific demethylase 6A isoform X9"
                     /calculated_mol_wt=149361
     Region          92..120
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(93,96..97,100..101,103,130,133..134,137..138,
                     140..141,164,170..171,174..175,178)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          97..377
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          128..158
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          163..193
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          204..232
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          242..277
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(284,287..288,291..292,294,318,321..322,325..326,
                     328..329,352,355..356,359..360,363)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          284..311
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          316..346
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          351..377
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          <523..>848
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          1053..1117
                     /region_name="JmjC"
                     /note="A domain family that is part of the cupin
                     metalloenzyme superfamily; smart00558"
                     /db_xref="CDD:214721"
     Region          1087..1195
                     /region_name="JmjC"
                     /note="JmjC domain, hydroxylase; pfam02373"
                     /db_xref="CDD:396791"
     CDS             1..1355
                     /gene="KDM6A"
                     /coded_by="XM_054056934.1:38..4105"
                     /db_xref="GeneID:104059249"
ORIGIN      
        1 mkscgvslaa aasaapfgde ekkmaagkas gqseedfasl taeerealsg ldsrlfgflr
       61 lhedgartka lllkavrcye slilkaegkv esdffcqlgh fnllledypk alsayqryys
      121 lqsdywknaa flyglglvyf hynafqwaik afqealyvdp sfcrakeihl rlglmfkvnt
      181 dyesslkhfq lalidcnpct lsnaeiqfhi ahlyeiqrky hsakeayeql lqienlpaqv
      241 katvlqqlgw mhhtvdqlgd katkesyaiq ylqksleadp nsgqswyflg rcyssigkvq
      301 dafisyrqsi dkseasadtw csigvlyqqq nqpmdalqay icavqldhgh aaawmdlgtl
      361 yescnqpqda ikcylnatrs kncsntsala arikylqnts dvwssghtvs hppvqqqihs
      421 wcltpqklqh leqlranrnn lnpaqklmle qlesqfvlmq qhqqmrqtgv aqvrstgipn
      481 gptadsslpt nsvsgqqpqv altrvpnvaq rgirpacpgq pmangpfaag pvpcstartl
      541 sstdtilign nhitesgsng nvpylqrnal slphnrtnlt ssaeepwknq lsnstqglhk
      601 gqsshlagpn gerplsstgp sqhlqaagtg iqnqnghpat psnsvtqgaa lnhlsshtat
      661 sggqqgitlt keskpsgnts avpetsrhsg etpnstasve glpnhvhqvt adavsspshg
      721 dskspgllss dnpqlsallm gkannnvgtg tcdkvnnihp avhtktensv asspssaist
      781 atpspksteq tttnsvtsln sphsghtvng egledsqspm kadpppvshk pspqiipsms
      841 vsiypssaev lkacrnlgkn glssssilld kcppprpppp pypplpkdkl npptpsiyle
      901 nkrdaffppl hqfctnpnnp vtvirglaga lkldlglfst ktlveanneh ivevrtqllq
      961 padenwdptg tkkiwrcess rshttiakya qyqassfqes lreenekksh hkdhsdnest
     1021 ssdnsgrrrr gpfktikfgt nidlsddkkw klqlheltkl pafvrvvsag nllshvghti
     1081 lgmntvqlym kvpgsrtpgh qennnfcsvn inigpgdcew fvvpesywgv mndfceknnm
     1141 nflmgswwpn ledlyeanvp vyrfiqrpgd lvwinagtvh wvqaigwcnn iawnvgplta
     1201 cqyklavery ewnklqsvks ivpmvhlswn marnikvsdp klfemikycl lrtlkqcqtl
     1261 realiaagke ivwhgrakde pahycsicev evfdllfvtn esnsrktyvv hcqdcarkis
     1321 tnlenfvvle qykmedlmqv ydqftlappl pssss
//
LOCUS       XP_053912910            1224 aa            linear   VRT 09-MAR-2023
DEFINITION  lysine-specific demethylase 6A isoform X10 [Cuculus canorus].
ACCESSION   XP_053912910
VERSION     XP_053912910.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056935.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1224
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1224
                     /product="lysine-specific demethylase 6A isoform X10"
                     /calculated_mol_wt=134301
     Region          18..>127
                     /region_name="TPR"
                     /note="Tetratricopeptide (TPR) repeat [General function
                     prediction only]; COG0457"
                     /db_xref="CDD:440225"
     Site            order(34,37..38,41..42,44,68,71..72,75..76,78..79,102,
                     105..106,109..110,113)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          34..61
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          66..96
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          101..127
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          <370..>695
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          900..964
                     /region_name="JmjC"
                     /note="A domain family that is part of the cupin
                     metalloenzyme superfamily; smart00558"
                     /db_xref="CDD:214721"
     Region          934..1042
                     /region_name="JmjC"
                     /note="JmjC domain, hydroxylase; pfam02373"
                     /db_xref="CDD:396791"
     CDS             1..1224
                     /gene="KDM6A"
                     /coded_by="XM_054056935.1:266..3940"
                     /db_xref="GeneID:104059249"
ORIGIN      
        1 mhhtvdqlgd katkesyaiq ylqksleadp nsgqswyflg rcyssigkvq dafisyrqsi
       61 dkseasadtw csigvlyqqq nqpmdalqay icavqldhgh aaawmdlgtl yescnqpqda
      121 ikcylnatrs kncsntsala arikylqaql cnlpqgslqn ktkllpsiee awslpipael
      181 tsrqgamnta qqackphhpn tepvlgltqt pisqqslplh mipssqvddl tspakrkrts
      241 sptkntsdvw ssghtvshpp vqqqihswcl tpqklqhleq lranrnnlnp aqklmleqle
      301 sqfvlmqqhq qmrqtgvaqv rstgipngpt adsslptnsv sgqqpqvalt rvpnvaqrgi
      361 rpacpgqpma ngpfaagpvp cstartlsst dtilignnhi tesgsngnvp ylqrnalslp
      421 hnrtnltssa eepwknqlsn stqglhkgqs shlagpnger plsstgpsqh lqaagtgiqn
      481 qnghpatpsn svtqgaalnh lsshtatsgg qqgitltkes kpsgntsavp etsrhsgetp
      541 nstasveglp nhvhqvtada vsspshgdsk spgllssdnp qlsallmgka nnnvgtgtcd
      601 kvnnihpavh tktensvass pssaistatp spksteqttt nsvtslnsph sghtvngegl
      661 edsqspmkad pppvshkpsp qiipsmsvsi ypssaevlka crnlgkngls sssilldkcp
      721 pprpppppyp plpkdklnpp tpsiylenkr daffpplhqf ctnpnnpvtv irglagalkl
      781 dlglfstktl veannehive vrtqllqpad enwdptgtkk iwrcessrsh ttiakyaqyq
      841 assfqeslre enekkshhkd hsdnestssd nsgrrrrgpf ktikfgtnid lsddkkwklq
      901 lheltklpaf vrvvsagnll shvghtilgm ntvqlymkvp gsrtpghqen nnfcsvnini
      961 gpgdcewfvv pesywgvmnd fceknnmnfl mgswwpnled lyeanvpvyr fiqrpgdlvw
     1021 inagtvhwvq aigwcnniaw nvgpltacqy klaveryewn klqsvksivp mvhlswnmar
     1081 nikvsdpklf emikycllrt lkqcqtlrea liaagkeivw hgrakdepah ycsicevevf
     1141 dllfvtnesn srktyvvhcq dcarkistnl enfvvleqyk medlmqvydq ftlvsqinkw
     1201 vhkyiickav vdclstplye ycgl
//
LOCUS       XP_053912911             302 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128850997 [Cuculus canorus].
ACCESSION   XP_053912911
VERSION     XP_053912911.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056936.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..302
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..302
                     /product="uncharacterized protein LOC128850997"
                     /calculated_mol_wt=33646
     Region          62..122
                     /region_name="CCP"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     cd00033"
                     /db_xref="CDD:153056"
     Site            order(72,92)
                     /site_type="active"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     CDS             1..302
                     /gene="LOC128850997"
                     /coded_by="XM_054056936.1:360..1268"
                     /db_xref="GeneID:128850997"
ORIGIN      
        1 mmeqrfgnci tlcllpwscl sfawsdvagp gttwpgaehv rkwlsrdivn gtyvhsntsa
       61 pcmalpppry gyyyvdrgsg vslgsvlvyw cqdgyqlvgs erllclrrgs asswsqpppy
      121 cqaapqpams gartalaasl lsgavilals vcfavccwrd rarrsregqq hgrkvrgrrk
      181 lspstrerrr ntfgrlkhyh rrdyhlsals ssvfpgafag rnnlafqrsp knapklflqs
      241 whpdapvlpq lvlqpgtppv navpsqpahn vlvpavpcha diplyyrsye ehrifnkfrm
      301 pv
//
LOCUS       XP_053912912             507 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM83F [Cuculus canorus].
ACCESSION   XP_053912912
VERSION     XP_053912912.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056937.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..507
                     /product="protein FAM83F"
                     /calculated_mol_wt=57375
     Region          20..284
                     /region_name="PLDc_SF"
                     /note="Catalytic domain of phospholipase D superfamily
                     proteins; cl15239"
                     /db_xref="CDD:472788"
     Site            order(232,234,247,249,258)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:197282"
     Site            232
                     /site_type="active"
                     /note="catalytic site [active]"
                     /db_xref="CDD:197282"
     CDS             1..507
                     /gene="FAM83F"
                     /coded_by="XM_054056937.1:13..1536"
                     /db_xref="GeneID:104055511"
ORIGIN      
        1 maesqvllld eshvnekvte aqarfyysee qrraletlvt rgeaayrdal rkdqlrdfls
       61 sqelqalrgs wrgyddpqes rkvvrgpgge tlslaywpec sdtevppldl gwtdktfyrg
      121 isrvalfthp rkeesaphlk evvremiqqa qkiiavvmdv ftdrdifrdi vdaaykrwip
      181 vyiildeegv klflemcrcl dlsdlqirni rirsvtgvgf ympagkirgt lasrflmvdg
      241 ekvatgsysf twssshidrn illvltgqhv emfdiefrel yaiseevniy kelgianpfh
      301 lgigkpglrs stvarkfinp kyglvagatr gdmmlwasrh rqdnqgimek eesseskkrl
      361 nqflndlvtl eqefpeiepp lenfnklnrs pqklfsrlhm dlrnksksre sirdlkkeda
      421 qanskqgkrf asglfsrkak rspgssiean sfaseghsge dlgnmklece qlsighasvr
      481 stegisgnmg pnsttsdknk qsacvls
//
LOCUS       XP_053912913             804 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: cytokine receptor common subunit beta-like
            [Cuculus canorus].
ACCESSION   XP_053912913
VERSION     XP_053912913.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056938.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..804
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..804
                     /product="LOW QUALITY PROTEIN: cytokine receptor common
                     subunit beta-like"
                     /calculated_mol_wt=89847
     Region          133..235
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(133,202,223)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(224..225,227..228)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          340..439
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(428..429,431..432)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..804
                     /gene="LOC104065902"
                     /coded_by="XM_054056938.1:475..2889"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /db_xref="GeneID:104065902"
ORIGIN      
        1 mreiisllla pylvlgvgni retipmqtlq cyndyisltt ctwmecseah ellnvtlnfn
       61 nssekkkett crshkginha dcqnftmhcv chihgydqrv ynfkfdlvlh aelnvylfqn
      121 vqtlppqdls vqplppqnls vslmrsgdfv ltweaadrsq glgnaleyev tykrqweswe
      181 kaasvllsnt trchlshedl vpgssyiarv rakpwldsgf sgqysdwste vlwetpgggl
      241 qprnlrclfn gadrlmcswe vkkaittsvl fglffratpa saeeecspvh eralphtphv
      301 vqsceipvtn sssqshyhvs vrakteekvi eayknikvlp panvsvtvte nqeyelrwik
      361 hnlqfgfikq ryqveywknn qyektlqkln isndeppfif tlqtldsste ykgkmrasvn
      421 tpyyegpwse wseeftwkte nvlppavlpv vfpgviitll ivsycsykyf lrkkqvween
      481 ipnpsksvli qsylgesvnq qparqvsfke enaseeveqi nclhmldgmt espaefhgae
      541 akrvqvshas qkssktagvp hkashslstl acplnqtagp sclfarlpck stahasvasq
      601 tcfafngpyl ynsmvssqpd ihhtlaadpv giseksvslq yvnlpkednp qapqrqehpg
      661 agppklfllp dekhtmqhln nerevspasp aygxgmsarr eeqkspaals cplefittes
      721 lllpsasnst hlslvtagdl pcdsqepqpp ndhpchefcp gktdvivpvl gqestsselh
      781 mdvfgdpagl ygslkptems lhvs
//
LOCUS       XP_053912914             955 aa            linear   VRT 09-MAR-2023
DEFINITION  exosome complex exonuclease RRP44 [Cuculus canorus].
ACCESSION   XP_053912914
VERSION     XP_053912914.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056939.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..955
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..955
                     /product="exosome complex exonuclease RRP44"
                     /calculated_mol_wt=108206
     Region          9..194
                     /region_name="PIN_Rrp44-like"
                     /note="VapC-like PIN domain of yeast exosome subunit Rrp44
                     endoribonuclease and other eukaryotic homologs; cd09862"
                     /db_xref="CDD:350211"
     Site            order(20..24,26,28,92,96..97,103,107,121,124)
                     /site_type="other"
                     /note="exosome subunit interface [polypeptide binding]"
                     /db_xref="CDD:350211"
     Site            order(31,36,39,156)
                     /site_type="metal-binding"
                     /note="metal binding site [ion binding]"
                     /db_xref="CDD:350211"
     Region          180..928
                     /region_name="VacB"
                     /note="Exoribonuclease R [Transcription]; COG0557"
                     /db_xref="CDD:440323"
     CDS             1..955
                     /gene="DIS3"
                     /coded_by="XM_054056939.1:60..2927"
                     /db_xref="GeneID:104054973"
ORIGIN      
        1 mltsrsflkr tragavvkvv rehylredip cgaaacrlcp tdrglqarps gapsalcpgp
       61 hyllpdtnll lhqidiledp viknvivlqt vlqevrnrsa pvykrirdvi qnpekhfysf
      121 tnehhretyi eqqkgessnd rndrairvav kwynehlkki edgekiqvif ltndrankek
      181 aleegitayt ceeyikslta npdlvdrlac vsdegkeies gkiifpehip lsklqqgiks
      241 giylqgtfra srenylegtv wvhgdaeenk eiiiqglkhl nravhedvva vellakdewv
      301 apssvvlqdd gqneddvese eekenvlkas vnkdmlrptg kvvgiikrnw rpfcgmlsks
      361 qikearrhlf tpadrripri rietrqaetl egqriivaid gwprnsrypn ghfvknlgna
      421 gdketetevl llehdvphqp fsqsvlsflp kmpwsiteqd mkyredlrhl cvcsvdppgc
      481 tdiddalhcr elengntevg vhiadvshfi rpgnaldees akrgttvylc ekridmvpel
      541 lssnlcslrs nvdrlafsci wemnhkaeil ktrftksiin skasltyaea qmridsatmn
      601 ddittslrgl nklakilkkk ridngaltls spevrfhmds ethdpidlqt kelketnsmv
      661 eefmllanvs vaqkiydefp efallrkhpa pppsnydilv kaaksknlei ktdsakalae
      721 sldmaesptf pylntllril atrcmmqavy fcsgmdndfh hyglaspiyt hftspirrya
      781 diivhrllav aigadctype ltdkhkladv cknlnyrhkm aqyaqrasva fhtqlffksk
      841 gvvnedayil fvrknaivvl ipkyglegtv ffeekdkptp kldynnevps ltvedttlhv
      901 fdkvkvnvml dasniqhqki rmvlvepkip gtdgsatlst etssknepek kkkkl
//
LOCUS       XP_053912915             761 aa            linear   VRT 09-MAR-2023
DEFINITION  progesterone-induced-blocking factor 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912915
VERSION     XP_053912915.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056940.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..761
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..761
                     /product="progesterone-induced-blocking factor 1 isoform
                     X1"
                     /calculated_mol_wt=89778
     Region          <36..412
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     Region          <380..654
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..761
                     /gene="PIBF1"
                     /coded_by="XM_054056940.1:196..2481"
                     /db_xref="GeneID:104054972"
ORIGIN      
        1 mshksskevk kinvsssles edislettvp tddvssseer egtvkitkql ierkellhnl
       61 qllkielsqk nlmidnlkve yltkieelee klndavhqkq llslrldsql tlqqedarkh
      121 qalmkqemet illrqkqlee tnhqlrerag dirrslrdle ltddcyeklk slpedqlsip
      181 eyvsirfyev vhslrkdlsd lqmkkeslte elsgcksqlk cltesyeder rnrselevrc
      241 qrltleladt kqmiqqgdyr renydkvkce rdafehdlse lrrkyeildv shkaqakern
      301 dlskelatiq qslnllqkdk dylnrqnmel svrcaheddr lerlqiqled akkareemye
      361 kyvasrdhyk seyekrlhee leqlrlktnq eieqlrstsk emyerenrnl reardnavae
      421 keraviaekd alrkydqlle qyrqmqlgte skvaellhqs klksfesehv qllqqetakn
      481 lsqcqmecek yqrklevltk efyslqssse trvielqtqn selqarlnty eklekeldei
      541 ilqtaemene veaervlfsy gyganvptta krrlkqsvhl arrllqlekq nsllvkdleh
      601 qkeqvtqisq eldranslls qvqqpykyli etvqqrdsqi slqkeriaql ekdisllnke
      661 ktallrvknq maadlerlln hreelatmkq llislhgkhy eknlpqshid vksatakdks
      721 nstmkllpeh eeenvftpkp tlftnkeapv wykklqkktp p
//
LOCUS       XP_053912916             761 aa            linear   VRT 09-MAR-2023
DEFINITION  progesterone-induced-blocking factor 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912916
VERSION     XP_053912916.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056941.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..761
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..761
                     /product="progesterone-induced-blocking factor 1 isoform
                     X1"
                     /calculated_mol_wt=89778
     Region          <36..412
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     Region          <380..654
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..761
                     /gene="PIBF1"
                     /coded_by="XM_054056941.1:208..2493"
                     /db_xref="GeneID:104054972"
ORIGIN      
        1 mshksskevk kinvsssles edislettvp tddvssseer egtvkitkql ierkellhnl
       61 qllkielsqk nlmidnlkve yltkieelee klndavhqkq llslrldsql tlqqedarkh
      121 qalmkqemet illrqkqlee tnhqlrerag dirrslrdle ltddcyeklk slpedqlsip
      181 eyvsirfyev vhslrkdlsd lqmkkeslte elsgcksqlk cltesyeder rnrselevrc
      241 qrltleladt kqmiqqgdyr renydkvkce rdafehdlse lrrkyeildv shkaqakern
      301 dlskelatiq qslnllqkdk dylnrqnmel svrcaheddr lerlqiqled akkareemye
      361 kyvasrdhyk seyekrlhee leqlrlktnq eieqlrstsk emyerenrnl reardnavae
      421 keraviaekd alrkydqlle qyrqmqlgte skvaellhqs klksfesehv qllqqetakn
      481 lsqcqmecek yqrklevltk efyslqssse trvielqtqn selqarlnty eklekeldei
      541 ilqtaemene veaervlfsy gyganvptta krrlkqsvhl arrllqlekq nsllvkdleh
      601 qkeqvtqisq eldranslls qvqqpykyli etvqqrdsqi slqkeriaql ekdisllnke
      661 ktallrvknq maadlerlln hreelatmkq llislhgkhy eknlpqshid vksatakdks
      721 nstmkllpeh eeenvftpkp tlftnkeapv wykklqkktp p
//
LOCUS       XP_053912917             689 aa            linear   VRT 09-MAR-2023
DEFINITION  progesterone-induced-blocking factor 1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912917
VERSION     XP_053912917.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056942.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..689
                     /product="progesterone-induced-blocking factor 1 isoform
                     X2"
                     /calculated_mol_wt=81321
     Region          <36..412
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     Region          <309..>603
                     /region_name="COG5022"
                     /note="Myosin heavy chain [General function prediction
                     only]"
                     /db_xref="CDD:227355"
     CDS             1..689
                     /gene="PIBF1"
                     /coded_by="XM_054056942.1:196..2265"
                     /db_xref="GeneID:104054972"
ORIGIN      
        1 mshksskevk kinvsssles edislettvp tddvssseer egtvkitkql ierkellhnl
       61 qllkielsqk nlmidnlkve yltkieelee klndavhqkq llslrldsql tlqqedarkh
      121 qalmkqemet illrqkqlee tnhqlrerag dirrslrdle ltddcyeklk slpedqlsip
      181 eyvsirfyev vhslrkdlsd lqmkkeslte elsgcksqlk cltesyeder rnrselevrc
      241 qrltleladt kqmiqqgdyr renydkvkce rdafehdlse lrrkyeildv shkaqakern
      301 dlskelatiq qslnllqkdk dylnrqnmel svrcaheddr lerlqiqled akkareemye
      361 kyvasrdhyk seyekrlhee leqlrlktnq eieqlrstsk emyerenrnl reardnavae
      421 keraviaekd alrkydqlle qyrqmqlgte skvaellhqs klksfesehv qllqqetakn
      481 lsqcqmecek yqrklevltk efyslqssse trvielqtqn selqarlnty eklekeldei
      541 ilqtaemene veaervlfsy gyganvptta krrlkqsvhl arrllqlekq nsllvkdleh
      601 qkeqvtqisq eelatmkqll islhgkhyek nlpqshidvk satakdksns tmkllpehee
      661 envftpkptl ftnkeapvwy kklqkktpp
//
LOCUS       XP_053912918             686 aa            linear   VRT 09-MAR-2023
DEFINITION  progesterone-induced-blocking factor 1 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053912918
VERSION     XP_053912918.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056943.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="progesterone-induced-blocking factor 1 isoform
                     X3"
                     /calculated_mol_wt=81234
     Region          <36..412
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     Region          <380..654
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..686
                     /gene="PIBF1"
                     /coded_by="XM_054056943.1:196..2256"
                     /db_xref="GeneID:104054972"
ORIGIN      
        1 mshksskevk kinvsssles edislettvp tddvssseer egtvkitkql ierkellhnl
       61 qllkielsqk nlmidnlkve yltkieelee klndavhqkq llslrldsql tlqqedarkh
      121 qalmkqemet illrqkqlee tnhqlrerag dirrslrdle ltddcyeklk slpedqlsip
      181 eyvsirfyev vhslrkdlsd lqmkkeslte elsgcksqlk cltesyeder rnrselevrc
      241 qrltleladt kqmiqqgdyr renydkvkce rdafehdlse lrrkyeildv shkaqakern
      301 dlskelatiq qslnllqkdk dylnrqnmel svrcaheddr lerlqiqled akkareemye
      361 kyvasrdhyk seyekrlhee leqlrlktnq eieqlrstsk emyerenrnl reardnavae
      421 keraviaekd alrkydqlle qyrqmqlgte skvaellhqs klksfesehv qllqqetakn
      481 lsqcqmecek yqrklevltk efyslqssse trvielqtqn selqarlnty eklekeldei
      541 ilqtaemene veaervlfsy gyganvptta krrlkqsvhl arrllqlekq nsllvkdleh
      601 qkeqvtqisq eldranslls qvqqpykyli etvqqrdsqi slqkeriaql ekdisllnke
      661 ktallrvknq maadlerlln hrekhr
//
LOCUS       XP_053912919             656 aa            linear   VRT 09-MAR-2023
DEFINITION  progesterone-induced-blocking factor 1 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053912919
VERSION     XP_053912919.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056944.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..656
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..656
                     /product="progesterone-induced-blocking factor 1 isoform
                     X4"
                     /calculated_mol_wt=77696
     Region          <36..412
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     Region          <380..656
                     /region_name="SMC_prok_B"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; TIGR02168"
                     /db_xref="CDD:274008"
     CDS             1..656
                     /gene="PIBF1"
                     /coded_by="XM_054056944.1:196..2166"
                     /db_xref="GeneID:104054972"
ORIGIN      
        1 mshksskevk kinvsssles edislettvp tddvssseer egtvkitkql ierkellhnl
       61 qllkielsqk nlmidnlkve yltkieelee klndavhqkq llslrldsql tlqqedarkh
      121 qalmkqemet illrqkqlee tnhqlrerag dirrslrdle ltddcyeklk slpedqlsip
      181 eyvsirfyev vhslrkdlsd lqmkkeslte elsgcksqlk cltesyeder rnrselevrc
      241 qrltleladt kqmiqqgdyr renydkvkce rdafehdlse lrrkyeildv shkaqakern
      301 dlskelatiq qslnllqkdk dylnrqnmel svrcaheddr lerlqiqled akkareemye
      361 kyvasrdhyk seyekrlhee leqlrlktnq eieqlrstsk emyerenrnl reardnavae
      421 keraviaekd alrkydqlle qyrqmqlgte skvaellhqs klksfesehv qllqqetakn
      481 lsqcqmecek yqrklevltk efyslqssse trvielqtqn selqarlnty eklekeldei
      541 ilqtaemene veaervlfsy gyganvptta krrlkqsvhl arrllqlekq nsllvkdleh
      601 qkeqvtqisq eldranslls qvqqpykyli etvqqrdsqi slqkeriaql ekdirn
//
LOCUS       XP_053912920             600 aa            linear   VRT 09-MAR-2023
DEFINITION  protein aurora borealis [Cuculus canorus].
ACCESSION   XP_053912920
VERSION     XP_053912920.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056945.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..600
                     /product="protein aurora borealis"
                     /calculated_mol_wt=66025
     Region          7..206
                     /region_name="BORA_N"
                     /note="Protein aurora borealis N-terminus; pfam15280"
                     /db_xref="CDD:464610"
     CDS             1..600
                     /gene="BORA"
                     /coded_by="XM_054056945.1:99..1901"
                     /db_xref="GeneID:104054967"
ORIGIN      
        1 mgdtreakmq itpespgqvt flnpfespsd yytlqeqivs splvfkstks sstpgkfrws
       61 ieqlalinpv eidsedvrrq amhlsharid ketedrrqka ieefftkrli vpspwteheg
      121 kqvsqfnstr tidlnsispi grqltlqpgk snaacqtvls lpvdfnleki lgeyfrtdef
      181 adqsqenlss sslrrklfle engsvsecls pslrspcssq plgvlcsidi spvrcrsple
      241 tsssgqfsss piqggtrtys lgsitsptfp egspaengst fspiafhirk tplsdqrkfk
      301 fcspdipsss nrmtppstrt pyidgcspik ncspmrlgac rgtaqyqtsv iripitvenh
      361 deaeedkena spaetgfpem vnginlrqqd sdtfargthl vvatvsitpd rseaccqrls
      421 afrdiegske nntvdmadaa easeenawik dtvgnsnapm tsfmtgitfs iensrmcmsp
      481 laesstipcd nssiqvdsgy ntqtcgssim dtvgtenscr etdvntsilq nksqllrtke
      541 ssilnhkdnq llrtrspqkq scfqkakpds tvfgqnatcs tsawkhknen pvqgfhrngm
//
LOCUS       XP_009554339             600 aa            linear   VRT 09-MAR-2023
DEFINITION  protein aurora borealis [Cuculus canorus].
ACCESSION   XP_009554339
VERSION     XP_009554339.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556044.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009554339.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..600
                     /product="protein aurora borealis"
                     /calculated_mol_wt=66025
     Region          7..206
                     /region_name="BORA_N"
                     /note="Protein aurora borealis N-terminus; pfam15280"
                     /db_xref="CDD:464610"
     CDS             1..600
                     /gene="BORA"
                     /coded_by="XM_009556044.2:461..2263"
                     /db_xref="GeneID:104054967"
ORIGIN      
        1 mgdtreakmq itpespgqvt flnpfespsd yytlqeqivs splvfkstks sstpgkfrws
       61 ieqlalinpv eidsedvrrq amhlsharid ketedrrqka ieefftkrli vpspwteheg
      121 kqvsqfnstr tidlnsispi grqltlqpgk snaacqtvls lpvdfnleki lgeyfrtdef
      181 adqsqenlss sslrrklfle engsvsecls pslrspcssq plgvlcsidi spvrcrsple
      241 tsssgqfsss piqggtrtys lgsitsptfp egspaengst fspiafhirk tplsdqrkfk
      301 fcspdipsss nrmtppstrt pyidgcspik ncspmrlgac rgtaqyqtsv iripitvenh
      361 deaeedkena spaetgfpem vnginlrqqd sdtfargthl vvatvsitpd rseaccqrls
      421 afrdiegske nntvdmadaa easeenawik dtvgnsnapm tsfmtgitfs iensrmcmsp
      481 laesstipcd nssiqvdsgy ntqtcgssim dtvgtenscr etdvntsilq nksqllrtke
      541 ssilnhkdnq llrtrspqkq scfqkakpds tvfgqnatcs tsawkhknen pvqgfhrngm
//
LOCUS       XP_009567525             414 aa            linear   VRT 09-MAR-2023
DEFINITION  probable G-protein coupled receptor 19 [Cuculus canorus].
ACCESSION   XP_009567525
VERSION     XP_009567525.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009569230.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..414
                     /product="probable G-protein coupled receptor 19"
                     /calculated_mol_wt=46871
     Region          66..340
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          67..91
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          100..122
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          138..160
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          181..197
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          220..243
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          274..296
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          308..333
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..414
                     /gene="GPR19"
                     /coded_by="XM_009569230.2:296..1540"
                     /db_xref="GeneID:104066608"
ORIGIN      
        1 mfaqsmdnss splvlptlll llqnksypei ssppagyekt esstgpgssr nhtllqyhlr
       61 pgeiaatsmv wgalwlvsif gnslvcvviq rsrktqsttn yfvvsmacad llisvasapf
      121 lllqftygrw tlgsvmckli rymqhltpgv qiyvllsiav drfytivypl sfkvsrekak
      181 nmilaswlvg tvfaspalff ygsnsnnhcn fflpdswega tygivhllwv flipcifiil
      241 fyqkviryiw rigtdgrtvr rtmnivprtk vktikmflml nslfllawlp fyvvqlwhpq
      301 eadyrksslv fliitcisfs asatkpslys lynanfrrgm ketfcmsamk cyrsnaytit
      361 tssriakkny vgiaeipapv ktvtkdsiyd afnreakekk lawpiqsnpp ntfv
//
LOCUS       XP_053912922             503 aa            linear   VRT 09-MAR-2023
DEFINITION  homeobox protein ARX isoform X1 [Cuculus canorus].
ACCESSION   XP_053912922
VERSION     XP_053912922.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056947.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..503
                     /product="homeobox protein ARX isoform X1"
                     /calculated_mol_wt=52955
     Region          <46..171
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          268..324
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     CDS             1..503
                     /gene="ARX"
                     /coded_by="XM_054056947.1:83..1594"
                     /db_xref="GeneID:128851000"
ORIGIN      
        1 msgpypeesc aerpecksks ptllssycid silgrrspck vrllgaapsl paiaarpdtd
       61 kaaqgspkgs ppfepaelhl ppklrrlygp gggrllppgp rgdrpeggag pvpaaapwdt
      121 lkisqapqvs isrsksyren apfvapppar delgspaahv eerpgpaapa aeeeeeeede
      181 emleeedeee eeleddeeee llgedgggll kearrgtaaa pgaeggdlsp keelllhped
      241 gegkdgeesv clsagsdsee gllkrkqrry rttftsyqle elerafqkth ypdvftreel
      301 amrldltear vqvwfqnrra kwrkrekaga qthppglpfp gplsathpls pyldaspfpp
      361 hhpaldsawt aaaaaaaaaa fpslpppppg saalppagtp lglgtflgaa vfrhpafisp
      421 afgrlfstma plgsassaaa llrqpapaae gavgsaglgd pasaaadrra ssiaalrlka
      481 kehaaqltql nilpgnstgk evc
//
LOCUS       XP_053912923             475 aa            linear   VRT 09-MAR-2023
DEFINITION  homeobox protein ARX isoform X2 [Cuculus canorus].
ACCESSION   XP_053912923
VERSION     XP_053912923.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056948.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..475
                     /product="homeobox protein ARX isoform X2"
                     /calculated_mol_wt=50026
     Region          <46..171
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          268..324
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     CDS             1..475
                     /gene="ARX"
                     /coded_by="XM_054056948.1:83..1510"
                     /db_xref="GeneID:128851000"
ORIGIN      
        1 msgpypeesc aerpecksks ptllssycid silgrrspck vrllgaapsl paiaarpdtd
       61 kaaqgspkgs ppfepaelhl ppklrrlygp gggrllppgp rgdrpeggag pvpaaapwdt
      121 lkisqapqvs isrsksyren apfvapppar delgspaahv eerpgpaapa aeeeeeeede
      181 emleeedeee eeleddeeee llgedgggll kearrgtaaa pgaeggdlsp keelllhped
      241 gegkdgeesv clsagsdsee gllkrkqrry rttftsyqle elerafqkth ypdvftreel
      301 amrldltear vqvwfqnrra kwrkrekaga qthppaldsa wtaaaaaaaa aafpslpppp
      361 pgsaalppag tplglgtflg aavfrhpafi spafgrlfst maplgsassa aallrqpapa
      421 aegavgsagl gdpasaaadr rassiaalrl kakehaaqlt qlnilpgnst gkevc
//
LOCUS       XP_053912924            1128 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA excision repair protein ERCC-5 [Cuculus canorus].
ACCESSION   XP_053912924
VERSION     XP_053912924.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056949.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1128
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1128
                     /product="DNA excision repair protein ERCC-5"
                     /calculated_mol_wt=127700
     Region          1..983
                     /region_name="rad2"
                     /note="DNA excision repair protein (rad2); TIGR00600"
                     /db_xref="CDD:273166"
     CDS             1..1128
                     /gene="ERCC5"
                     /coded_by="XM_054056949.1:93..3479"
                     /db_xref="GeneID:104062971"
ORIGIN      
        1 mgvqglwkll ecagrpinpe mlegkilavd isiwlnqaik gardrggksi qnahlltlfh
       61 rlckllffri rpvfvfdgea pllkrqtlak rrqrresams dsrkttekll ktflkrqvik
      121 taltgksnea lpsltevrre gidmyalpsl edeeknssee edekewkeri shknmlmeel
      181 cenpcsidve sddfnklppe ikheiltdmk eitkrrrtlf eampegsddf sqyqlrgllk
      241 ksslnrcien vekelnqqhs geiqtqyene ggfvkevesr rvvsedtshy ilikgiqake
      301 ttsgdletta gpsskmleli ksnkinespa nakpvtsdkl qtekdnsvvt appsprtlla
      361 iqaamiesss edelgvedtg klnidqsvte kgsvsprtll aiqqvlsddd kkeegvtvrt
      421 dgalrersev kdvllsssde edwipkvkeg kkpptihssn qvimqgaece qknqeleenh
      481 vilkntsvsr tenyscidnt gkgkedvgke vvdkeengsk mglsslrdkd lclqkpscsp
      541 vqtsveavih aettelskne envkisekie evilqteenv sevrkdigsf petkgpdeer
      601 egisqsedsd sdgsfievdt aisnevqflp kydeklvget afpemetdrq divtqdllke
      661 sdqvqlatnq naereddgkd aadewqnisl eeleelendl saeqnmlqtq kqkqervaas
      721 vtgqmflesq ellrlfgipy ieapmeaeaq calldltdqt sgtitddsdv wlfgarhvyk
      781 nffsqnkyve yyqyvdfqnq lgldrsklin layllgsdyt egipnvgfvt ameilnefpg
      841 hglepllkfa ewwneaqknk klrpnphdtk vkkklrdlql ssgfpnpava eaylkpvvde
      901 trglftwgkp dveqirefcq nhfgwtrtki deillpvmkq lnlqqtqlri dsffrlaqhe
      961 kqtiksqrlr ravtclkrke keeadeirea taimeielkh heerkgesta gcanqavate
     1021 vrsgkrrkhs nsskehlyag gfignlhlse tssdssfees esrdsgkskr rknmsareta
     1081 ghkektgcss ssdedgehrn vvmvtakpvf egrkkrlqrk rgrkkknf
//
LOCUS       XP_053912925             529 aa            linear   VRT 09-MAR-2023
DEFINITION  basic immunoglobulin-like variable motif-containing protein isoform
            X1 [Cuculus canorus].
ACCESSION   XP_053912925
VERSION     XP_053912925.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056950.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..529
                     /product="basic immunoglobulin-like variable
                     motif-containing protein isoform X1"
                     /calculated_mol_wt=59284
     CDS             1..529
                     /gene="BIVM"
                     /coded_by="XM_054056950.1:251..1840"
                     /db_xref="GeneID:104062973"
ORIGIN      
        1 mpnvsedeke ngsgnngnte nkpgrkspea slhnpmksyc vsdastvslv sredghypwg
       61 cpvthtrekf yticsdyafl nrvtsicksp sasvsaclsg saalnagnns psllsvqtga
      121 seiiynedgn ldslpgslgk lplaweidks efngmttnlk nkagnmkkqa tkkkslekks
      181 kqcrecpqrs aledvkerkv ldlrrwycvs rpqyktscgi sslvscwnfl ystlgagslp
      241 pitqeealni lgfqppfeei rfgpftgntt lmrwfrqind hfhikgcsyv lykphgknkt
      301 agetaagala kltrglkdes mayiyhcqnh yfcpigfeat pvkaskayrl ldldsgdlgs
      361 lpssttgfqc dfrarvlqqe veywiligep srkhptihck rwadivtdln tqnpeyldir
      421 hlerglqhrk tkkvggnlhc iiafqrlnwq rfgpwnfpfg nirqdkqsqt qgpgiskses
      481 edniskkqhg rlgrsfsagf hqestwkksn lrerrnsgyq syndydgnd
//
LOCUS       XP_053912927             529 aa            linear   VRT 09-MAR-2023
DEFINITION  basic immunoglobulin-like variable motif-containing protein isoform
            X1 [Cuculus canorus].
ACCESSION   XP_053912927
VERSION     XP_053912927.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056952.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..529
                     /product="basic immunoglobulin-like variable
                     motif-containing protein isoform X1"
                     /calculated_mol_wt=59284
     CDS             1..529
                     /gene="BIVM"
                     /coded_by="XM_054056952.1:226..1815"
                     /db_xref="GeneID:104062973"
ORIGIN      
        1 mpnvsedeke ngsgnngnte nkpgrkspea slhnpmksyc vsdastvslv sredghypwg
       61 cpvthtrekf yticsdyafl nrvtsicksp sasvsaclsg saalnagnns psllsvqtga
      121 seiiynedgn ldslpgslgk lplaweidks efngmttnlk nkagnmkkqa tkkkslekks
      181 kqcrecpqrs aledvkerkv ldlrrwycvs rpqyktscgi sslvscwnfl ystlgagslp
      241 pitqeealni lgfqppfeei rfgpftgntt lmrwfrqind hfhikgcsyv lykphgknkt
      301 agetaagala kltrglkdes mayiyhcqnh yfcpigfeat pvkaskayrl ldldsgdlgs
      361 lpssttgfqc dfrarvlqqe veywiligep srkhptihck rwadivtdln tqnpeyldir
      421 hlerglqhrk tkkvggnlhc iiafqrlnwq rfgpwnfpfg nirqdkqsqt qgpgiskses
      481 edniskkqhg rlgrsfsagf hqestwkksn lrerrnsgyq syndydgnd
//
LOCUS       XP_053912928             529 aa            linear   VRT 09-MAR-2023
DEFINITION  basic immunoglobulin-like variable motif-containing protein isoform
            X1 [Cuculus canorus].
ACCESSION   XP_053912928
VERSION     XP_053912928.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056953.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..529
                     /product="basic immunoglobulin-like variable
                     motif-containing protein isoform X1"
                     /calculated_mol_wt=59284
     CDS             1..529
                     /gene="BIVM"
                     /coded_by="XM_054056953.1:254..1843"
                     /db_xref="GeneID:104062973"
ORIGIN      
        1 mpnvsedeke ngsgnngnte nkpgrkspea slhnpmksyc vsdastvslv sredghypwg
       61 cpvthtrekf yticsdyafl nrvtsicksp sasvsaclsg saalnagnns psllsvqtga
      121 seiiynedgn ldslpgslgk lplaweidks efngmttnlk nkagnmkkqa tkkkslekks
      181 kqcrecpqrs aledvkerkv ldlrrwycvs rpqyktscgi sslvscwnfl ystlgagslp
      241 pitqeealni lgfqppfeei rfgpftgntt lmrwfrqind hfhikgcsyv lykphgknkt
      301 agetaagala kltrglkdes mayiyhcqnh yfcpigfeat pvkaskayrl ldldsgdlgs
      361 lpssttgfqc dfrarvlqqe veywiligep srkhptihck rwadivtdln tqnpeyldir
      421 hlerglqhrk tkkvggnlhc iiafqrlnwq rfgpwnfpfg nirqdkqsqt qgpgiskses
      481 edniskkqhg rlgrsfsagf hqestwkksn lrerrnsgyq syndydgnd
//
LOCUS       XP_053912929             505 aa            linear   VRT 09-MAR-2023
DEFINITION  basic immunoglobulin-like variable motif-containing protein isoform
            X2 [Cuculus canorus].
ACCESSION   XP_053912929
VERSION     XP_053912929.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056954.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..505
                     /product="basic immunoglobulin-like variable
                     motif-containing protein isoform X2"
                     /calculated_mol_wt=56757
     CDS             1..505
                     /gene="BIVM"
                     /coded_by="XM_054056954.1:251..1768"
                     /db_xref="GeneID:104062973"
ORIGIN      
        1 mpnvsedeke ngsgnngnte nkpgrkspea slhnpmksyc vsdastvslv sredghypwg
       61 cpvthtrekf yticsdyafl nrvtsicksp sasvsaclsg saalnagnns psllsvqtga
      121 seiiynedgn ldslpgslgk lplaweidks efngmttnlk nkagnmkkqa tkkkslekks
      181 kqcrecpqrs aledvkerkv ldlrrwycvs rpqyktscgi sslvscwnfl ystlgagslp
      241 pitqeealni lgfqppfeei rfgpftgntt lmrwfrqind hfhikgcsyv lykphgknkt
      301 agetaagala kltrglkdes mayiyhcqnh yfcpigfeat pvkaskayra rvlqqeveyw
      361 iligepsrkh ptihckrwad ivtdlntqnp eyldirhler glqhrktkkv ggnlhciiaf
      421 qrlnwqrfgp wnfpfgnirq dkqsqtqgpg isksesedni skkqhgrlgr sfsagfhqes
      481 twkksnlrer rnsgyqsynd ydgnd
//
LOCUS       XP_053912930             477 aa            linear   VRT 09-MAR-2023
DEFINITION  basic immunoglobulin-like variable motif-containing protein isoform
            X3 [Cuculus canorus].
ACCESSION   XP_053912930
VERSION     XP_053912930.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056955.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..477
                     /product="basic immunoglobulin-like variable
                     motif-containing protein isoform X3"
                     /calculated_mol_wt=53387
     CDS             1..477
                     /gene="BIVM"
                     /coded_by="XM_054056955.1:251..1684"
                     /db_xref="GeneID:104062973"
ORIGIN      
        1 mpnvsedeke ngsgnngnte nkpgrkspea slhnpmksyc vsdastvslv sredghypwg
       61 cpvthtrekf yticsdyafl nrvtsicksp sasvsaclsg saalnagnns psllsvqtga
      121 seiiynedgn ldslpgslgk lplaweidks efngmttnlk nkagnmkkqa tkkkslekks
      181 kqcrecpqrs aledvkerkv ldlrrwycvs rpqyktscgi sslvscwnfl ystlgagslp
      241 pitqeealni lgfqppfeei rfgpftgntt lmrwfrqind hfhikgcsyv lykphgknkt
      301 agetaagala kltrglkdes mayiyhcqnh yfcpigfeat pvkaskayrw adivtdlntq
      361 npeyldirhl erglqhrktk kvggnlhcii afqrlnwqrf gpwnfpfgni rqdkqsqtqg
      421 pgisksesed niskkqhgrl grsfsagfhq estwkksnlr errnsgyqsy ndydgnd
//
LOCUS       XP_053912931             275 aa            linear   VRT 09-MAR-2023
DEFINITION  protein-lysine methyltransferase METTL21E isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053912931
VERSION     XP_053912931.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056956.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..275
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..275
                     /product="protein-lysine methyltransferase METTL21E
                     isoform X1"
                     /calculated_mol_wt=31627
     Region          74..239
                     /region_name="AdoMet_MTases"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); cl17173"
                     /db_xref="CDD:473071"
     Site            order(120..126,142..143,175..177,195)
                     /site_type="other"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]"
                     /db_xref="CDD:100107"
     CDS             1..275
                     /gene="LOC104062974"
                     /coded_by="XM_054056956.1:334..1161"
                     /db_xref="GeneID:104062974"
ORIGIN      
        1 mtwmglgyqw cefqienasr kpghllqlqn wlqicyltdl saeekedeqi vaeimrrrff
       61 palithkawe gfhfagheir iteatdcyga vvwpsalvlc yfletnskqy nlvdknviei
      121 gagtglvsiv asllgalvta tdlpellgnl khnvlqntkl kckhqprvke lswgvdlekn
      181 fprsscqfdy imaadvvyhh pfldellltf dhlckndtii lwamkfrldk enqfvgrfqt
      241 ifdlevisnf pslnitlyka mrkgrmkvrp skpmi
//
LOCUS       XP_053912932             274 aa            linear   VRT 09-MAR-2023
DEFINITION  protein-lysine methyltransferase METTL21E isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053912932
VERSION     XP_053912932.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056957.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..274
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..274
                     /product="protein-lysine methyltransferase METTL21E
                     isoform X2"
                     /calculated_mol_wt=31498
     Region          73..238
                     /region_name="AdoMet_MTases"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); cl17173"
                     /db_xref="CDD:473071"
     Site            order(119..125,141..142,174..176,194)
                     /site_type="other"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]"
                     /db_xref="CDD:100107"
     CDS             1..274
                     /gene="LOC104062974"
                     /coded_by="XM_054056957.1:336..1160"
                     /db_xref="GeneID:104062974"
ORIGIN      
        1 mtwmglgyqw cefqienasr kpghllqlqn wlqicyltdl saekedeqiv aeimrrrffp
       61 alithkaweg fhfagheiri teatdcygav vwpsalvlcy fletnskqyn lvdknvieig
      121 agtglvsiva sllgalvtat dlpellgnlk hnvlqntklk ckhqprvkel swgvdleknf
      181 prsscqfdyi maadvvyhhp fldellltfd hlckndtiil wamkfrldke nqfvgrfqti
      241 fdlevisnfp slnitlykam rkgrmkvrps kpmi
//
LOCUS       XP_053912933             256 aa            linear   VRT 09-MAR-2023
DEFINITION  protein-lysine methyltransferase METTL21E isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053912933
VERSION     XP_053912933.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056958.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..256
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..256
                     /product="protein-lysine methyltransferase METTL21E
                     isoform X3"
                     /calculated_mol_wt=29432
     Region          55..220
                     /region_name="AdoMet_MTases"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); cl17173"
                     /db_xref="CDD:473071"
     Site            order(101..107,123..124,151,157..158,176)
                     /site_type="other"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]"
                     /db_xref="CDD:100107"
     CDS             1..256
                     /gene="LOC104062974"
                     /coded_by="XM_054056958.1:218..988"
                     /db_xref="GeneID:104062974"
ORIGIN      
        1 mdlksshnnh lqnelgreqe rqeeekedeq ivaeimrrrf fpalithkaw egfhfaghei
       61 riteatdcyg avvwpsalvl cyfletnskq ynlvdknvie igagtglvsi vasllgalvt
      121 atdlpellgn lkhnvlqntk lkckhqprvk elswgvdlek nfprsscqfd yimaadvvyh
      181 hpfldelllt fdhlckndti ilwamkfrld kenqfvgrfq tifdlevisn fpslnitlyk
      241 amrkgrmkvr pskpmi
//
LOCUS       XP_009563411             256 aa            linear   VRT 09-MAR-2023
DEFINITION  protein-lysine methyltransferase METTL21E isoform X3 [Cuculus
            canorus].
ACCESSION   XP_009563411
VERSION     XP_009563411.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565116.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..256
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..256
                     /product="protein-lysine methyltransferase METTL21E
                     isoform X3"
                     /calculated_mol_wt=29432
     Region          55..220
                     /region_name="AdoMet_MTases"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); cl17173"
                     /db_xref="CDD:473071"
     Site            order(101..107,123..124,151,157..158,176)
                     /site_type="other"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]"
                     /db_xref="CDD:100107"
     CDS             1..256
                     /gene="LOC104062974"
                     /coded_by="XM_009565116.2:159..929"
                     /db_xref="GeneID:104062974"
ORIGIN      
        1 mdlksshnnh lqnelgreqe rqeeekedeq ivaeimrrrf fpalithkaw egfhfaghei
       61 riteatdcyg avvwpsalvl cyfletnskq ynlvdknvie igagtglvsi vasllgalvt
      121 atdlpellgn lkhnvlqntk lkckhqprvk elswgvdlek nfprsscqfd yimaadvvyh
      181 hpfldelllt fdhlckndti ilwamkfrld kenqfvgrfq tifdlevisn fpslnitlyk
      241 amrkgrmkvr pskpmi
//
LOCUS       XP_053912934             255 aa            linear   VRT 09-MAR-2023
DEFINITION  protein-lysine methyltransferase METTL21E isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053912934
VERSION     XP_053912934.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056959.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..255
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..255
                     /product="protein-lysine methyltransferase METTL21E
                     isoform X4"
                     /calculated_mol_wt=29303
     Region          54..219
                     /region_name="AdoMet_MTases"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); cl17173"
                     /db_xref="CDD:473071"
     Site            order(100..106,122..123,150,156..157,175)
                     /site_type="other"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]"
                     /db_xref="CDD:100107"
     CDS             1..255
                     /gene="LOC104062974"
                     /coded_by="XM_054056959.1:218..985"
                     /db_xref="GeneID:104062974"
ORIGIN      
        1 mdlksshnnh lqnelgreqe rqeekedeqi vaeimrrrff palithkawe gfhfagheir
       61 iteatdcyga vvwpsalvlc yfletnskqy nlvdknviei gagtglvsiv asllgalvta
      121 tdlpellgnl khnvlqntkl kckhqprvke lswgvdlekn fprsscqfdy imaadvvyhh
      181 pfldellltf dhlckndtii lwamkfrldk enqfvgrfqt ifdlevisnf pslnitlyka
      241 mrkgrmkvrp skpmi
//
LOCUS       XP_053912936             239 aa            linear   VRT 09-MAR-2023
DEFINITION  protein-lysine methyltransferase METTL21E isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053912936
VERSION     XP_053912936.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056961.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..239
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..239
                     /product="protein-lysine methyltransferase METTL21E
                     isoform X5"
                     /calculated_mol_wt=27310
     Region          38..203
                     /region_name="AdoMet_MTases"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); cl17173"
                     /db_xref="CDD:473071"
     Site            order(84..90,106..107,139..141,159)
                     /site_type="other"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]"
                     /db_xref="CDD:100107"
     CDS             1..239
                     /gene="LOC104062974"
                     /coded_by="XM_054056961.1:361..1080"
                     /db_xref="GeneID:104062974"
ORIGIN      
        1 mhlasleeke deqivaeimr rrffpalith kawegfhfag heiriteatd cygavvwpsa
       61 lvlcyfletn skqynlvdkn vieigagtgl vsivasllga lvtatdlpel lgnlkhnvlq
      121 ntklkckhqp rvkelswgvd leknfprssc qfdyimaadv vyhhpfldel lltfdhlckn
      181 dtiilwamkf rldkenqfvg rfqtifdlev isnfpslnit lykamrkgrm kvrpskpmi
//
LOCUS       XP_053912937             236 aa            linear   VRT 09-MAR-2023
DEFINITION  protein-lysine methyltransferase METTL21E isoform X6 [Cuculus
            canorus].
ACCESSION   XP_053912937
VERSION     XP_053912937.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056962.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..236
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..236
                     /product="protein-lysine methyltransferase METTL21E
                     isoform X6"
                     /calculated_mol_wt=27037
     Region          35..200
                     /region_name="AdoMet_MTases"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); cl17173"
                     /db_xref="CDD:473071"
     Site            order(81..87,103..104,136..138,156)
                     /site_type="other"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]"
                     /db_xref="CDD:100107"
     CDS             1..236
                     /gene="LOC104062974"
                     /coded_by="XM_054056962.1:397..1107"
                     /db_xref="GeneID:104062974"
ORIGIN      
        1 mfteekedeq ivaeimrrrf fpalithkaw egfhfaghei riteatdcyg avvwpsalvl
       61 cyfletnskq ynlvdknvie igagtglvsi vasllgalvt atdlpellgn lkhnvlqntk
      121 lkckhqprvk elswgvdlek nfprsscqfd yimaadvvyh hpfldelllt fdhlckndti
      181 ilwamkfrld kenqfvgrfq tifdlevisn fpslnitlyk amrkgrmkvr pskpmi
//
LOCUS       XP_053912938             236 aa            linear   VRT 09-MAR-2023
DEFINITION  protein-lysine methyltransferase METTL21E isoform X6 [Cuculus
            canorus].
ACCESSION   XP_053912938
VERSION     XP_053912938.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056963.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..236
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..236
                     /product="protein-lysine methyltransferase METTL21E
                     isoform X6"
                     /calculated_mol_wt=27037
     Region          35..200
                     /region_name="AdoMet_MTases"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); cl17173"
                     /db_xref="CDD:473071"
     Site            order(81..87,103..104,136..138,156)
                     /site_type="other"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]"
                     /db_xref="CDD:100107"
     CDS             1..236
                     /gene="LOC104062974"
                     /coded_by="XM_054056963.1:126..836"
                     /db_xref="GeneID:104062974"
ORIGIN      
        1 mfteekedeq ivaeimrrrf fpalithkaw egfhfaghei riteatdcyg avvwpsalvl
       61 cyfletnskq ynlvdknvie igagtglvsi vasllgalvt atdlpellgn lkhnvlqntk
      121 lkckhqprvk elswgvdlek nfprsscqfd yimaadvvyh hpfldelllt fdhlckndti
      181 ilwamkfrld kenqfvgrfq tifdlevisn fpslnitlyk amrkgrmkvr pskpmi
//
LOCUS       XP_053912939             235 aa            linear   VRT 09-MAR-2023
DEFINITION  protein-lysine methyltransferase METTL21E isoform X7 [Cuculus
            canorus].
ACCESSION   XP_053912939
VERSION     XP_053912939.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056964.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..235
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..235
                     /product="protein-lysine methyltransferase METTL21E
                     isoform X7"
                     /calculated_mol_wt=26907
     Region          34..199
                     /region_name="AdoMet_MTases"
                     /note="S-adenosylmethionine-dependent methyltransferases
                     (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes
                     that use S-adenosyl-L-methionine (SAM or AdoMet) as a
                     substrate for methyltransfer, creating the product
                     S-adenosyl-L-homocysteine (AdoHcy); cl17173"
                     /db_xref="CDD:473071"
     Site            order(80..86,102..103,135..137,155)
                     /site_type="other"
                     /note="S-adenosylmethionine binding site [chemical
                     binding]"
                     /db_xref="CDD:100107"
     CDS             1..235
                     /gene="LOC104062974"
                     /coded_by="XM_054056964.1:16..723"
                     /db_xref="GeneID:104062974"
ORIGIN      
        1 mftekedeqi vaeimrrrff palithkawe gfhfagheir iteatdcyga vvwpsalvlc
       61 yfletnskqy nlvdknviei gagtglvsiv asllgalvta tdlpellgnl khnvlqntkl
      121 kckhqprvke lswgvdlekn fprsscqfdy imaadvvyhh pfldellltf dhlckndtii
      181 lwamkfrldk enqfvgrfqt ifdlevisnf pslnitlyka mrkgrmkvrp skpmi
//
LOCUS       XP_053912940             385 aa            linear   VRT 09-MAR-2023
DEFINITION  muscleblind-like protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912940
VERSION     XP_053912940.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056965.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..385
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..385
                     /product="muscleblind-like protein 2 isoform X1"
                     /calculated_mol_wt=41226
     Region          17..40
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     Region          178..202
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     CDS             1..385
                     /gene="MBNL2"
                     /coded_by="XM_054056965.1:847..2004"
                     /db_xref="GeneID:104057291"
ORIGIN      
        1 malnvapvrd tkwltlevcr qfqrgtcsrs deeckfahpp kscqvengrv iacfdslkgr
       61 ctrenckylh ppthlktqle ingrnnliqq ktaaamlaqq mqfmfpgtpl qpvptfpvgp
      121 tigtntaisf apyltpvtpg vglvpteilp tppvivpgsp pvsvpgstat qkllrtdkle
      181 vcrefqrgnc argetdcrfa hpadstmidt ndntvtvcmd yikgrcmrek ckyfhppahl
      241 qakikaaqhq anqaavaaqa aaaaatvmtq stakamkrpl eatvdlafpp gvlhplpkrq
      301 aleksngasa vfnpsvlhyq qalanaqlqq haafiptgsv lcmtpatsiv pmmhnataat
      361 vsaattpats vpfaatatan qiilk
//
LOCUS       XP_053912941             385 aa            linear   VRT 09-MAR-2023
DEFINITION  muscleblind-like protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912941
VERSION     XP_053912941.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056966.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..385
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..385
                     /product="muscleblind-like protein 2 isoform X1"
                     /calculated_mol_wt=41226
     Region          17..40
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     Region          178..202
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     CDS             1..385
                     /gene="MBNL2"
                     /coded_by="XM_054056966.1:912..2069"
                     /db_xref="GeneID:104057291"
ORIGIN      
        1 malnvapvrd tkwltlevcr qfqrgtcsrs deeckfahpp kscqvengrv iacfdslkgr
       61 ctrenckylh ppthlktqle ingrnnliqq ktaaamlaqq mqfmfpgtpl qpvptfpvgp
      121 tigtntaisf apyltpvtpg vglvpteilp tppvivpgsp pvsvpgstat qkllrtdkle
      181 vcrefqrgnc argetdcrfa hpadstmidt ndntvtvcmd yikgrcmrek ckyfhppahl
      241 qakikaaqhq anqaavaaqa aaaaatvmtq stakamkrpl eatvdlafpp gvlhplpkrq
      301 aleksngasa vfnpsvlhyq qalanaqlqq haafiptgsv lcmtpatsiv pmmhnataat
      361 vsaattpats vpfaatatan qiilk
//
LOCUS       XP_053912942             385 aa            linear   VRT 09-MAR-2023
DEFINITION  muscleblind-like protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912942
VERSION     XP_053912942.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056967.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..385
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..385
                     /product="muscleblind-like protein 2 isoform X1"
                     /calculated_mol_wt=41226
     Region          17..40
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     Region          178..202
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     CDS             1..385
                     /gene="MBNL2"
                     /coded_by="XM_054056967.1:775..1932"
                     /db_xref="GeneID:104057291"
ORIGIN      
        1 malnvapvrd tkwltlevcr qfqrgtcsrs deeckfahpp kscqvengrv iacfdslkgr
       61 ctrenckylh ppthlktqle ingrnnliqq ktaaamlaqq mqfmfpgtpl qpvptfpvgp
      121 tigtntaisf apyltpvtpg vglvpteilp tppvivpgsp pvsvpgstat qkllrtdkle
      181 vcrefqrgnc argetdcrfa hpadstmidt ndntvtvcmd yikgrcmrek ckyfhppahl
      241 qakikaaqhq anqaavaaqa aaaaatvmtq stakamkrpl eatvdlafpp gvlhplpkrq
      301 aleksngasa vfnpsvlhyq qalanaqlqq haafiptgsv lcmtpatsiv pmmhnataat
      361 vsaattpats vpfaatatan qiilk
//
LOCUS       XP_053912943             385 aa            linear   VRT 09-MAR-2023
DEFINITION  muscleblind-like protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912943
VERSION     XP_053912943.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056968.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..385
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..385
                     /product="muscleblind-like protein 2 isoform X1"
                     /calculated_mol_wt=41226
     Region          17..40
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     Region          178..202
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     CDS             1..385
                     /gene="MBNL2"
                     /coded_by="XM_054056968.1:988..2145"
                     /db_xref="GeneID:104057291"
ORIGIN      
        1 malnvapvrd tkwltlevcr qfqrgtcsrs deeckfahpp kscqvengrv iacfdslkgr
       61 ctrenckylh ppthlktqle ingrnnliqq ktaaamlaqq mqfmfpgtpl qpvptfpvgp
      121 tigtntaisf apyltpvtpg vglvpteilp tppvivpgsp pvsvpgstat qkllrtdkle
      181 vcrefqrgnc argetdcrfa hpadstmidt ndntvtvcmd yikgrcmrek ckyfhppahl
      241 qakikaaqhq anqaavaaqa aaaaatvmtq stakamkrpl eatvdlafpp gvlhplpkrq
      301 aleksngasa vfnpsvlhyq qalanaqlqq haafiptgsv lcmtpatsiv pmmhnataat
      361 vsaattpats vpfaatatan qiilk
//
LOCUS       XP_053912944             385 aa            linear   VRT 09-MAR-2023
DEFINITION  muscleblind-like protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912944
VERSION     XP_053912944.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056969.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..385
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..385
                     /product="muscleblind-like protein 2 isoform X1"
                     /calculated_mol_wt=41226
     Region          17..40
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     Region          178..202
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     CDS             1..385
                     /gene="MBNL2"
                     /coded_by="XM_054056969.1:709..1866"
                     /db_xref="GeneID:104057291"
ORIGIN      
        1 malnvapvrd tkwltlevcr qfqrgtcsrs deeckfahpp kscqvengrv iacfdslkgr
       61 ctrenckylh ppthlktqle ingrnnliqq ktaaamlaqq mqfmfpgtpl qpvptfpvgp
      121 tigtntaisf apyltpvtpg vglvpteilp tppvivpgsp pvsvpgstat qkllrtdkle
      181 vcrefqrgnc argetdcrfa hpadstmidt ndntvtvcmd yikgrcmrek ckyfhppahl
      241 qakikaaqhq anqaavaaqa aaaaatvmtq stakamkrpl eatvdlafpp gvlhplpkrq
      301 aleksngasa vfnpsvlhyq qalanaqlqq haafiptgsv lcmtpatsiv pmmhnataat
      361 vsaattpats vpfaatatan qiilk
//
LOCUS       XP_053912945             379 aa            linear   VRT 09-MAR-2023
DEFINITION  muscleblind-like protein 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912945
VERSION     XP_053912945.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056970.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..379
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..379
                     /product="muscleblind-like protein 2 isoform X2"
                     /calculated_mol_wt=41038
     Region          17..40
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     Region          178..202
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     CDS             1..379
                     /gene="MBNL2"
                     /coded_by="XM_054056970.1:847..1986"
                     /db_xref="GeneID:104057291"
ORIGIN      
        1 malnvapvrd tkwltlevcr qfqrgtcsrs deeckfahpp kscqvengrv iacfdslkgr
       61 ctrenckylh ppthlktqle ingrnnliqq ktaaamlaqq mqfmfpgtpl qpvptfpvgp
      121 tigtntaisf apyltpvtpg vglvpteilp tppvivpgsp pvsvpgstat qkllrtdkle
      181 vcrefqrgnc argetdcrfa hpadstmidt ndntvtvcmd yikgrcmrek ckyfhppahl
      241 qakikaaqhq anqaavaaqa aaaaatvmtq stakamkrpl eatvdlafpp gvlhplpkrq
      301 aleksngasa vfnpsvlhyq qalanaqlqq haafiptdnp eiagrsgtec heaslrtakh
      361 gyctyypvss slelpqtac
//
LOCUS       XP_053912947             373 aa            linear   VRT 09-MAR-2023
DEFINITION  muscleblind-like protein 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912947
VERSION     XP_053912947.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056972.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..373
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..373
                     /product="muscleblind-like protein 2 isoform X3"
                     /calculated_mol_wt=40064
     Region          17..40
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     Region          178..202
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     CDS             1..373
                     /gene="MBNL2"
                     /coded_by="XM_054056972.1:847..1968"
                     /db_xref="GeneID:104057291"
ORIGIN      
        1 malnvapvrd tkwltlevcr qfqrgtcsrs deeckfahpp kscqvengrv iacfdslkgr
       61 ctrenckylh ppthlktqle ingrnnliqq ktaaamlaqq mqfmfpgtpl qpvptfpvgp
      121 tigtntaisf apyltpvtpg vglvpteilp tppvivpgsp pvsvpgstat qkllrtdkle
      181 vcrefqrgnc argetdcrfa hpadstmidt ndntvtvcmd yikgrcmrek ckyfhppahl
      241 qakikaaqhq anqaavaaqa aaaaatvmtq stakamkrpl eatvdlafpp gvlhplpkrq
      301 aleksngasa vfnpsvlhyq qalanaqlqq haafiptvpm mhnataatvs aattpatsvp
      361 faatatanqi ilk
//
LOCUS       XP_053912948             367 aa            linear   VRT 09-MAR-2023
DEFINITION  muscleblind-like protein 2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053912948
VERSION     XP_053912948.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056973.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..367
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..367
                     /product="muscleblind-like protein 2 isoform X4"
                     /calculated_mol_wt=39284
     Region          17..40
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     Region          178..202
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     CDS             1..367
                     /gene="MBNL2"
                     /coded_by="XM_054056973.1:847..1950"
                     /db_xref="GeneID:104057291"
ORIGIN      
        1 malnvapvrd tkwltlevcr qfqrgtcsrs deeckfahpp kscqvengrv iacfdslkgr
       61 ctrenckylh ppthlktqle ingrnnliqq ktaaamlaqq mqfmfpgtpl qpvptfpvgp
      121 tigtntaisf apyltpvtpg vglvpteilp tppvivpgsp pvsvpgstat qkllrtdkle
      181 vcrefqrgnc argetdcrfa hpadstmidt ndntvtvcmd yikgrcmrek ckyfhppahl
      241 qakikaaqhq anqaavaaqa aaaaatvmaf ppgvlhplpk rqaleksnga savfnpsvlh
      301 yqqalanaql qqhaafiptg svlcmtpats ivpmmhnata atvsaattpa tsvpfaatat
      361 anqiilk
//
LOCUS       XP_053912949             361 aa            linear   VRT 09-MAR-2023
DEFINITION  muscleblind-like protein 2 isoform X5 [Cuculus canorus].
ACCESSION   XP_053912949
VERSION     XP_053912949.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056974.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..361
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..361
                     /product="muscleblind-like protein 2 isoform X5"
                     /calculated_mol_wt=39096
     Region          17..40
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     Region          178..202
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     CDS             1..361
                     /gene="MBNL2"
                     /coded_by="XM_054056974.1:846..1931"
                     /db_xref="GeneID:104057291"
ORIGIN      
        1 malnvapvrd tkwltlevcr qfqrgtcsrs deeckfahpp kscqvengrv iacfdslkgr
       61 ctrenckylh ppthlktqle ingrnnliqq ktaaamlaqq mqfmfpgtpl qpvptfpvgp
      121 tigtntaisf apyltpvtpg vglvpteilp tppvivpgsp pvsvpgstat qkllrtdkle
      181 vcrefqrgnc argetdcrfa hpadstmidt ndntvtvcmd yikgrcmrek ckyfhppahl
      241 qakikaaqhq anqaavaaqa aaaaatvmaf ppgvlhplpk rqaleksnga savfnpsvlh
      301 yqqalanaql qqhaafiptd npeiagrsgt echeaslrta khgyctyypv ssslelpqta
      361 c
//
LOCUS       XP_053912950             355 aa            linear   VRT 09-MAR-2023
DEFINITION  muscleblind-like protein 2 isoform X6 [Cuculus canorus].
ACCESSION   XP_053912950
VERSION     XP_053912950.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056975.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..355
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..355
                     /product="muscleblind-like protein 2 isoform X6"
                     /calculated_mol_wt=38122
     Region          17..40
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     Region          178..202
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     CDS             1..355
                     /gene="MBNL2"
                     /coded_by="XM_054056975.1:847..1914"
                     /db_xref="GeneID:104057291"
ORIGIN      
        1 malnvapvrd tkwltlevcr qfqrgtcsrs deeckfahpp kscqvengrv iacfdslkgr
       61 ctrenckylh ppthlktqle ingrnnliqq ktaaamlaqq mqfmfpgtpl qpvptfpvgp
      121 tigtntaisf apyltpvtpg vglvpteilp tppvivpgsp pvsvpgstat qkllrtdkle
      181 vcrefqrgnc argetdcrfa hpadstmidt ndntvtvcmd yikgrcmrek ckyfhppahl
      241 qakikaaqhq anqaavaaqa aaaaatvmaf ppgvlhplpk rqaleksnga savfnpsvlh
      301 yqqalanaql qqhaafiptv pmmhnataat vsaattpats vpfaatatan qiilk
//
LOCUS       XP_053912951             290 aa            linear   VRT 09-MAR-2023
DEFINITION  muscleblind-like protein 2 isoform X7 [Cuculus canorus].
ACCESSION   XP_053912951
VERSION     XP_053912951.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056976.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..290
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..290
                     /product="muscleblind-like protein 2 isoform X7"
                     /calculated_mol_wt=30442
     Region          83..107
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     Region          120..142
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     CDS             1..290
                     /gene="MBNL2"
                     /coded_by="XM_054056976.1:269..1141"
                     /db_xref="GeneID:104057291"
ORIGIN      
        1 mlaqqmqfmf pgtplqpvpt fpvgptigtn taisfapylt pvtpgvglvp teilptppvi
       61 vpgsppvsvp gstatqkllr tdklevcref qrgncarget dcrfahpads tmidtndntv
      121 tvcmdyikgr cmrekckyfh ppahlqakik aaqhqanqaa vaaqaaaaaa tvmtqstaka
      181 mkrpleatvd lafppgvlhp lpkrqaleks ngasavfnps vlhyqqalan aqlqqhaafi
      241 ptgsvlcmtp atsivpmmhn ataatvsaat tpatsvpfaa tatanqiilk
//
LOCUS       XP_053912952             290 aa            linear   VRT 09-MAR-2023
DEFINITION  muscleblind-like protein 2 isoform X7 [Cuculus canorus].
ACCESSION   XP_053912952
VERSION     XP_053912952.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056977.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..290
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..290
                     /product="muscleblind-like protein 2 isoform X7"
                     /calculated_mol_wt=30442
     Region          83..107
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     Region          120..142
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     CDS             1..290
                     /gene="MBNL2"
                     /coded_by="XM_054056977.1:339..1211"
                     /db_xref="GeneID:104057291"
ORIGIN      
        1 mlaqqmqfmf pgtplqpvpt fpvgptigtn taisfapylt pvtpgvglvp teilptppvi
       61 vpgsppvsvp gstatqkllr tdklevcref qrgncarget dcrfahpads tmidtndntv
      121 tvcmdyikgr cmrekckyfh ppahlqakik aaqhqanqaa vaaqaaaaaa tvmtqstaka
      181 mkrpleatvd lafppgvlhp lpkrqaleks ngasavfnps vlhyqqalan aqlqqhaafi
      241 ptgsvlcmtp atsivpmmhn ataatvsaat tpatsvpfaa tatanqiilk
//
LOCUS       XP_053912953             543 aa            linear   VRT 09-MAR-2023
DEFINITION  epidermal growth factor-like protein 6 [Cuculus canorus].
ACCESSION   XP_053912953
VERSION     XP_053912953.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056978.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..543
                     /product="epidermal growth factor-like protein 6"
                     /calculated_mol_wt=59888
     Region          <84..128
                     /region_name="vWFA"
                     /note="Von Willebrand factor type A (vWA) domain was
                     originally found in the blood coagulation protein von
                     Willebrand factor (vWF). Typically, the vWA domain is made
                     up of approximately 200 amino acid residues folded into a
                     classic a/b para-rossmann type of...; cl00057"
                     /db_xref="CDD:469594"
     Region          172..200
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF domain; pfam07645"
                     /db_xref="CDD:429571"
     Site            order(172,175,191)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238011"
     Region          221..256
                     /region_name="EGF_3"
                     /note="EGF domain; pfam12947"
                     /db_xref="CDD:463759"
     Region          397..539
                     /region_name="MAM"
                     /note="Meprin, A5 protein, and protein tyrosine
                     phosphatase Mu (MAM) domain. MAM is an extracellular
                     domain which mediates protein-protein interactions and is
                     found in a diverse set of proteins, many of which are
                     known to function in cell adhesion. Members...; cd06263"
                     /db_xref="CDD:99706"
     CDS             1..543
                     /gene="EGFL6"
                     /coded_by="XM_054056978.1:23..1654"
                     /db_xref="GeneID:104054891"
ORIGIN      
        1 mvpaprsall aallaagvaa agssrargql vtvsqpgvcr ygsrldccyg wkknnkghce
       61 aicghgckyg ectgpnkckc fpgftgktcn qdlnecglkp rpcehrcmnt hgsykcycln
      121 rymlmpdgtc assrtcamvn cqygceevkg evqclcpsgg lqlgpngrtc ididecstgk
      181 avcsynrrci ntfgsyyckc qigyelkyvs grydcvdvne cvtnthrcnl haeclniegs
      241 fkckckqgyr gsgfncavip eksvkeiari pgtakdtikq lvahknsvkk heaiknmipe
      301 armtpaskth lqlldyedgi dlggsyaeee keneataeee peesdkegte dfenqidyeq
      361 slrgdvffps vkeaaafgpl lsqrkipvsr pekevdcsfs rgvcdwkqdt dddfdwnpad
      421 rdrgggyyma vpafvghknd mgrlellltd lkpkstycli fnyrlagerv gklrvflank
      481 ktasvweenk gkderwrtgk ielfqgaetn nsvifeserg kgktgeigvd nvilisgvcp
      541 edt
//
LOCUS       XP_053912954            1675 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053912954
VERSION     XP_053912954.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056979.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1675
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1675
                     /product="target of Nesh-SH3 isoform X1"
                     /calculated_mol_wt=185147
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <735..1276
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1441..1533
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1522..1523,1525..1526)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1675
                     /gene="ABI3BP"
                     /coded_by="XM_054056979.1:103..5130"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt
      601 faipempstk sategpglkf tshtstetrr smiafdenqh ipstsetsni kemlsavpvt
      661 qrselestsl hlanqetvea sqrpdlests stllettrtv katrrprlks ttpsslatqq
      721 tvmvtssadl eisipplsrt pyvltttial sgvqpvlssp vtpskpettd tgpatsesil
      781 esftpktsrp fqwprvtlap keiplipskv kpsattevql vkpapksphl epktshtvek
      841 pkstlapkea kstpsaskpr prartkkprt kpaatipvsv ttrspytyeh pktaevlepi
      901 tarveqprst iapketqrfh skpktspkph ipqakdvles itlrtdqlkp tivpketqrv
      961 pskhriplss evpqtkpvle sitfrtekpr steapketrr gpskpktsps phvpstrasl
     1021 kesrrvpskp raspspdvpy tkpvltpttf rveqpktata pkepqhtpfk pktaptpdap
     1081 hskpeiiptf hepdttmiph ipertkatla ptekqfihtk skpsekprvl htkpaihqtt
     1141 pqpiitksst ttehsratma pketllipsk pktsvepevp qakpapkath lgsinlitvh
     1201 vvdgskmtlv pnetyqissk pkiaqateip wfhtaphktr ltsarpkpsd ksqmrpalsk
     1261 ttvapartia pglpkwivpt devytpedvd rqidadvkkp feyshtwekp fsvttppgpr
     1321 hppippvkpt qmrrkplppn tvtgkpgipa kptgptspvr trtsyktpta fatpeyyvda
     1381 tvfsssptse tdssgkpryq aphvmymkkd edvpcsitss lehfpqeevg tkeeptrppq
     1441 npptnltvvt vegcptfvil dwekpendtv teyevvsten gasdgekeks iittnqthst
     1501 venlkpdtsy efhvkprnpl gegpssnvvt fstesadprv sepismgkda iwteipfnsd
     1561 tyseckgkqy vkrtwykkfv gvqlcnslry kiylsdsltg kfynigdqrg hgedhcqfvd
     1621 sfldgrtgqq edlpvkdgff ravrqepvkf gkiggethin yvrwyecgts ipgkw
//
LOCUS       XP_053912955            1674 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053912955
VERSION     XP_053912955.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056980.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1674
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1674
                     /product="target of Nesh-SH3 isoform X2"
                     /calculated_mol_wt=185076
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <735..1275
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1440..1532
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1521..1522,1524..1525)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1674
                     /gene="ABI3BP"
                     /coded_by="XM_054056980.1:103..5127"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt
      601 faipempstk sategpglkf tshtstetrr smiafdenqh ipstsetsni kemlsavpvt
      661 qrselestsl hlanqetvea sqrpdlests stllettrtv katrrprlks ttpsslatqq
      721 tvmvtssadl eisipplsrt pyvltttial sgvqpvlssp vtpskpettd tgpatsesil
      781 esftpktsrp fqwprvtlap keiplipskv kpsattevql vkpapksphl epktshtvek
      841 pkstlapkea kstpsaskpr prartkkprt kpatipvsvt trspytyehp ktaevlepit
      901 arveqprsti apketqrfhs kpktspkphi pqakdvlesi tlrtdqlkpt ivpketqrvp
      961 skhriplsse vpqtkpvles itfrtekprs teapketrrg pskpktspsp hvpstraslk
     1021 esrrvpskpr aspspdvpyt kpvltpttfr veqpktatap kepqhtpfkp ktaptpdaph
     1081 skpeiiptfh epdttmiphi pertkatlap tekqfihtks kpsekprvlh tkpaihqttp
     1141 qpiitksstt tehsratmap ketllipskp ktsvepevpq akpapkathl gsinlitvhv
     1201 vdgskmtlvp netyqisskp kiaqateipw fhtaphktrl tsarpkpsdk sqmrpalskt
     1261 tvapartiap glpkwivptd evytpedvdr qidadvkkpf eyshtwekpf svttppgprh
     1321 ppippvkptq mrrkplppnt vtgkpgipak ptgptspvrt rtsyktptaf atpeyyvdat
     1381 vfsssptset dssgkpryqa phvmymkkde dvpcsitssl ehfpqeevgt keeptrppqn
     1441 pptnltvvtv egcptfvild wekpendtvt eyevvsteng asdgekeksi ittnqthstv
     1501 enlkpdtsye fhvkprnplg egpssnvvtf stesadprvs epismgkdai wteipfnsdt
     1561 yseckgkqyv krtwykkfvg vqlcnslryk iylsdsltgk fynigdqrgh gedhcqfvds
     1621 fldgrtgqqe dlpvkdgffr avrqepvkfg kiggethiny vrwyecgtsi pgkw
//
LOCUS       XP_053912956            1659 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053912956
VERSION     XP_053912956.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056981.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1659
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1659
                     /product="target of Nesh-SH3 isoform X3"
                     /calculated_mol_wt=183376
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <735..1260
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1425..1517
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1506..1507,1509..1510)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1659
                     /gene="ABI3BP"
                     /coded_by="XM_054056981.1:103..5082"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt
      601 faipempstk sategpglkf tshtstetrr smiafdenqh ipstsetsni kemlsavpvt
      661 qrselestsl hlanqetvea sqrpdlests stllettrtv katrrprlks ttpsslatqq
      721 tvmvtssadl eisipplsrt pyvltttial sgvqpvlssp vtpskpettd tgpatsesil
      781 esftpktsrp fqwprvtlap keiplipskv kpsattevql vkpapksphl epktshtvek
      841 pkstlapkea kstpsaskpr prartkkprt kpaatipvsv ttrspytyeh pktaevlepi
      901 tarveqprst iapketqrfh skpktspkph ipqakdvles itlrtdqlkp tivpketqrv
      961 pskhriplss evpqtkpvle sitfrtekpr steapketrr gpskpktsps phvpstrasl
     1021 kesrrvpskp raspspdvpy tkpapkepqh tpfkpktapt pdaphskpei iptfhepdtt
     1081 miphipertk atlaptekqf ihtkskpsek prvlhtkpai hqttpqpiit ksstttehsr
     1141 atmapketll ipskpktsve pevpqakpap kathlgsinl itvhvvdgsk mtlvpnetyq
     1201 isskpkiaqa teipwfhtap hktrltsarp kpsdksqmrp alskttvapa rtiapglpkw
     1261 ivptdevytp edvdrqidad vkkpfeysht wekpfsvttp pgprhppipp vkptqmrrkp
     1321 lppntvtgkp gipakptgpt spvrtrtsyk tptafatpey yvdatvfsss ptsetdssgk
     1381 pryqaphvmy mkkdedvpcs itsslehfpq eevgtkeept rppqnpptnl tvvtvegcpt
     1441 fvildwekpe ndtvteyevv stengasdge keksiittnq thstvenlkp dtsyefhvkp
     1501 rnplgegpss nvvtfstesa dprvsepism gkdaiwteip fnsdtyseck gkqyvkrtwy
     1561 kkfvgvqlcn slrykiylsd sltgkfynig dqrghgedhc qfvdsfldgr tgqqedlpvk
     1621 dgffravrqe pvkfgkigge thinyvrwye cgtsipgkw
//
LOCUS       XP_053912957            1659 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X4 [Cuculus canorus].
ACCESSION   XP_053912957
VERSION     XP_053912957.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056982.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1659
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1659
                     /product="target of Nesh-SH3 isoform X4"
                     /calculated_mol_wt=183337
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <735..1260
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1425..1517
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1506..1507,1509..1510)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1659
                     /gene="ABI3BP"
                     /coded_by="XM_054056982.1:103..5082"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt
      601 faipempstk sategpglkf tshtstetrr smiafdenqh ipstsetsni kemlsavpvt
      661 qrselestsl hlanqetvea sqrpdlests stllettrtv katrrprlks ttpsslatqq
      721 tvmvtssadl eisipplsrt pyvltttial sgvqpvlssp vtpskpettd tgpatsesil
      781 esftpktsrp fqwprvtlap keiplipskv kpsattevql vkpapksphl epktshtvek
      841 pkstlapkea kstpsaskpr prartkkprt kpaatipvsv ttrspytyeh pktaevlepi
      901 tarveqprst iapketqrfh skpktspkph ipqakdvpke tqrvpskhri plssevpqtk
      961 pvlesitfrt ekprsteapk etrrgpskpk tspsphvpst raslkesrrv pskpraspsp
     1021 dvpytkpvlt pttfrveqpk tatapkepqh tpfkpktapt pdaphskpei iptfhepdtt
     1081 miphipertk atlaptekqf ihtkskpsek prvlhtkpai hqttpqpiit ksstttehsr
     1141 atmapketll ipskpktsve pevpqakpap kathlgsinl itvhvvdgsk mtlvpnetyq
     1201 isskpkiaqa teipwfhtap hktrltsarp kpsdksqmrp alskttvapa rtiapglpkw
     1261 ivptdevytp edvdrqidad vkkpfeysht wekpfsvttp pgprhppipp vkptqmrrkp
     1321 lppntvtgkp gipakptgpt spvrtrtsyk tptafatpey yvdatvfsss ptsetdssgk
     1381 pryqaphvmy mkkdedvpcs itsslehfpq eevgtkeept rppqnpptnl tvvtvegcpt
     1441 fvildwekpe ndtvteyevv stengasdge keksiittnq thstvenlkp dtsyefhvkp
     1501 rnplgegpss nvvtfstesa dprvsepism gkdaiwteip fnsdtyseck gkqyvkrtwy
     1561 kkfvgvqlcn slrykiylsd sltgkfynig dqrghgedhc qfvdsfldgr tgqqedlpvk
     1621 dgffravrqe pvkfgkigge thinyvrwye cgtsipgkw
//
LOCUS       XP_053912958            1654 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X5 [Cuculus canorus].
ACCESSION   XP_053912958
VERSION     XP_053912958.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056983.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1654
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1654
                     /product="target of Nesh-SH3 isoform X5"
                     /calculated_mol_wt=182793
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <484..906
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          <714..1255
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1420..1512
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1501..1502,1504..1505)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1654
                     /gene="ABI3BP"
                     /coded_by="XM_054056983.1:103..5067"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt
      601 faipempstk sategpglkf tshtstetrr smiafdenqh ipstsetsni kemlsavpas
      661 qrpdlestss tllettrtvk atrrprlkst tpsslatqqt vmvtssadle isipplsrtp
      721 yvltttials gvqpvlsspv tpskpettdt gpatsesile sftpktsrpf qwprvtlapk
      781 eiplipskvk psattevqlv kpapksphle pktshtvekp kstlapkeak stpsaskprp
      841 rartkkprtk paatipvsvt trspytyehp ktaevlepit arveqprsti apketqrfhs
      901 kpktspkphi pqakdvlesi tlrtdqlkpt ivpketqrvp skhriplsse vpqtkpvles
      961 itfrtekprs teapketrrg pskpktspsp hvpstraslk esrrvpskpr aspspdvpyt
     1021 kpvltpttfr veqpktatap kepqhtpfkp ktaptpdaph skpeiiptfh epdttmiphi
     1081 pertkatlap tekqfihtks kpsekprvlh tkpaihqttp qpiitksstt tehsratmap
     1141 ketllipskp ktsvepevpq akpapkathl gsinlitvhv vdgskmtlvp netyqisskp
     1201 kiaqateipw fhtaphktrl tsarpkpsdk sqmrpalskt tvapartiap glpkwivptd
     1261 evytpedvdr qidadvkkpf eyshtwekpf svttppgprh ppippvkptq mrrkplppnt
     1321 vtgkpgipak ptgptspvrt rtsyktptaf atpeyyvdat vfsssptset dssgkpryqa
     1381 phvmymkkde dvpcsitssl ehfpqeevgt keeptrppqn pptnltvvtv egcptfvild
     1441 wekpendtvt eyevvsteng asdgekeksi ittnqthstv enlkpdtsye fhvkprnplg
     1501 egpssnvvtf stesadprvs epismgkdai wteipfnsdt yseckgkqyv krtwykkfvg
     1561 vqlcnslryk iylsdsltgk fynigdqrgh gedhcqfvds fldgrtgqqe dlpvkdgffr
     1621 avrqepvkfg kiggethiny vrwyecgtsi pgkw
//
LOCUS       XP_053912959            1652 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X6 [Cuculus canorus].
ACCESSION   XP_053912959
VERSION     XP_053912959.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056984.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1652
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1652
                     /product="target of Nesh-SH3 isoform X6"
                     /calculated_mol_wt=182645
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <735..1253
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1418..1510
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1499..1500,1502..1503)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1652
                     /gene="ABI3BP"
                     /coded_by="XM_054056984.1:103..5061"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt
      601 faipempstk sategpglkf tshtstetrr smiafdenqh ipstsetsni kemlsavpvt
      661 qrselestsl hlanqetvea sqrpdlests stllettrtv katrrprlks ttpsslatqq
      721 tvmvtssadl eisipplsrt pyvltttial sgvqpvlssp vtpskpettd tgpatsesil
      781 esftpktsrp fqwprvtlap keiplipskv kpsattevql vkpapksphl epktshtvek
      841 pkstlapkea kstpsaskpr prartkkprt kpvlepitar veqprstiap ketqrfhskp
      901 ktspkphipq akdvlesitl rtdqlkptiv pketqrvpsk hriplssevp qtkpvlesit
      961 frtekprste apketrrgps kpktspsphv pstraslkes rrvpskpras pspdvpytkp
     1021 vltpttfrve qpktatapke pqhtpfkpkt aptpdaphsk peiiptfhep dttmiphipe
     1081 rtkatlapte kqfihtkskp sekprvlhtk paihqttpqp iitkssttte hsratmapke
     1141 tllipskpkt svepevpqak papkathlgs inlitvhvvd gskmtlvpne tyqisskpki
     1201 aqateipwfh taphktrlts arpkpsdksq mrpalskttv apartiapgl pkwivptdev
     1261 ytpedvdrqi dadvkkpfey shtwekpfsv ttppgprhpp ippvkptqmr rkplppntvt
     1321 gkpgipakpt gptspvrtrt syktptafat peyyvdatvf sssptsetds sgkpryqaph
     1381 vmymkkdedv pcsitssleh fpqeevgtke eptrppqnpp tnltvvtveg cptfvildwe
     1441 kpendtvtey evvstengas dgekeksiit tnqthstven lkpdtsyefh vkprnplgeg
     1501 pssnvvtfst esadprvsep ismgkdaiwt eipfnsdtys eckgkqyvkr twykkfvgvq
     1561 lcnslrykiy lsdsltgkfy nigdqrghge dhcqfvdsfl dgrtgqqedl pvkdgffrav
     1621 rqepvkfgki ggethinyvr wyecgtsipg kw
//
LOCUS       XP_053912960            1650 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X7 [Cuculus canorus].
ACCESSION   XP_053912960
VERSION     XP_053912960.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056985.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1650
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1650
                     /product="target of Nesh-SH3 isoform X7"
                     /calculated_mol_wt=182446
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <710..1251
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1416..1508
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1497..1498,1500..1501)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1650
                     /gene="ABI3BP"
                     /coded_by="XM_054056985.1:103..5055"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmlatqr
      481 pdlestlsas lettrtvkat rrprlksttp aslatqqtim ashdftstlq tstsakmseq
      541 etvtfqapfk pvtsdnseae lasdetqpfs srsttfaipe mpstksateg pglkftshts
      601 tetrrsmiaf denqhipsts etsnikemls avpvtqrsel estslhlanq etveasqrpd
      661 lestsstlle ttrtvkatrr prlksttpss latqqtvmvt ssadleisip plsrtpyvlt
      721 ttialsgvqp vlsspvtpsk pettdtgpat sesilesftp ktsrpfqwpr vtlapkeipl
      781 ipskvkpsat tevqlvkpap ksphlepkts htvekpkstl apkeakstps askprprart
      841 kkprtkpaat ipvsvttrsp ytyehpktae vlepitarve qprstiapke tqrfhskpkt
      901 spkphipqak dvlesitlrt dqlkptivpk etqrvpskhr iplssevpqt kpvlesitfr
      961 tekprsteap ketrrgpskp ktspsphvps traslkesrr vpskprasps pdvpytkpvl
     1021 tpttfrveqp ktatapkepq htpfkpktap tpdaphskpe iiptfhepdt tmiphipert
     1081 katlaptekq fihtkskpse kprvlhtkpa ihqttpqpii tksstttehs ratmapketl
     1141 lipskpktsv epevpqakpa pkathlgsin litvhvvdgs kmtlvpnety qisskpkiaq
     1201 ateipwfhta phktrltsar pkpsdksqmr palskttvap artiapglpk wivptdevyt
     1261 pedvdrqida dvkkpfeysh twekpfsvtt ppgprhppip pvkptqmrrk plppntvtgk
     1321 pgipakptgp tspvrtrtsy ktptafatpe yyvdatvfss sptsetdssg kpryqaphvm
     1381 ymkkdedvpc sitsslehfp qeevgtkeep trppqnpptn ltvvtvegcp tfvildwekp
     1441 endtvteyev vstengasdg ekeksiittn qthstvenlk pdtsyefhvk prnplgegps
     1501 snvvtfstes adprvsepis mgkdaiwtei pfnsdtysec kgkqyvkrtw ykkfvgvqlc
     1561 nslrykiyls dsltgkfyni gdqrghgedh cqfvdsfldg rtgqqedlpv kdgffravrq
     1621 epvkfgkigg ethinyvrwy ecgtsipgkw
//
LOCUS       XP_053912961            1650 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X8 [Cuculus canorus].
ACCESSION   XP_053912961
VERSION     XP_053912961.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056986.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1650
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1650
                     /product="target of Nesh-SH3 isoform X8"
                     /calculated_mol_wt=182413
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <710..1251
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1416..1508
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1497..1498,1500..1501)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1650
                     /gene="ABI3BP"
                     /coded_by="XM_054056986.1:103..5055"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilat
      361 qspglkslps aetrememas eetqlvssgs ktsgttevqp tssasydfhy vtstpqtfta
      421 seisdtagdt aeweismpis ttepqlletm ldldekkpls srsttlsmpe mpptsaatqr
      481 pdlestlsas lettrtvkat rrprlksttp aslatqqtim ashdftstlq tstsakmseq
      541 etvtfqapfk pvtsdnseae lasdetqpfs srsttfaipe mpstksateg pglkftshts
      601 tetrrsmiaf denqhipsts etsnikemls avpvtqrsel estslhlanq etveasqrpd
      661 lestsstlle ttrtvkatrr prlksttpss latqqtvmvt ssadleisip plsrtpyvlt
      721 ttialsgvqp vlsspvtpsk pettdtgpat sesilesftp ktsrpfqwpr vtlapkeipl
      781 ipskvkpsat tevqlvkpap ksphlepkts htvekpkstl apkeakstps askprprart
      841 kkprtkpaat ipvsvttrsp ytyehpktae vlepitarve qprstiapke tqrfhskpkt
      901 spkphipqak dvlesitlrt dqlkptivpk etqrvpskhr iplssevpqt kpvlesitfr
      961 tekprsteap ketrrgpskp ktspsphvps traslkesrr vpskprasps pdvpytkpvl
     1021 tpttfrveqp ktatapkepq htpfkpktap tpdaphskpe iiptfhepdt tmiphipert
     1081 katlaptekq fihtkskpse kprvlhtkpa ihqttpqpii tksstttehs ratmapketl
     1141 lipskpktsv epevpqakpa pkathlgsin litvhvvdgs kmtlvpnety qisskpkiaq
     1201 ateipwfhta phktrltsar pkpsdksqmr palskttvap artiapglpk wivptdevyt
     1261 pedvdrqida dvkkpfeysh twekpfsvtt ppgprhppip pvkptqmrrk plppntvtgk
     1321 pgipakptgp tspvrtrtsy ktptafatpe yyvdatvfss sptsetdssg kpryqaphvm
     1381 ymkkdedvpc sitsslehfp qeevgtkeep trppqnpptn ltvvtvegcp tfvildwekp
     1441 endtvteyev vstengasdg ekeksiittn qthstvenlk pdtsyefhvk prnplgegps
     1501 snvvtfstes adprvsepis mgkdaiwtei pfnsdtysec kgkqyvkrtw ykkfvgvqlc
     1561 nslrykiyls dsltgkfyni gdqrghgedh cqfvdsfldg rtgqqedlpv kdgffravrq
     1621 epvkfgkigg ethinyvrwy ecgtsipgkw
//
LOCUS       XP_053912962            1650 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X9 [Cuculus canorus].
ACCESSION   XP_053912962
VERSION     XP_053912962.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056987.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1650
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1650
                     /product="target of Nesh-SH3 isoform X9"
                     /calculated_mol_wt=182562
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <735..1251
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <1095..1417
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     Region          1416..1508
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1497..1498,1500..1501)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1650
                     /gene="ABI3BP"
                     /coded_by="XM_054056987.1:103..5055"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt
      601 faipempstk sategpglkf tshtstetrr smiafdenqh ipstsetsni kemlsavpvt
      661 qrselestsl hlanqetvea sqrpdlests stllettrtv katrrprlks ttpsslatqq
      721 tvmvtssadl eisipplsrt pyvltttial sgvqpvlssp vtpskpettd tgpatsesil
      781 esftpktsrp fqwprvtlap keiplipskv kpsattevql vkpapksphl epktshtvek
      841 pkstlapkea kstpsaskpr prartkkprt kpaatipvsv ttrspytyeh pktaevlepi
      901 tarveqprst iapketqrfh skpktspkph ipqakdvles itlrtdqlkp tivpketqrv
      961 pskhriplss evpqtkpvle sitfrtekpr steapketrr gpskpktsps phvpstrasl
     1021 kesrrvpskp raspspdvpy tkpvltpttf rveqpktata pkepqhtpfk pktaptpdap
     1081 hskpeiiptf hepdttmiph ipertkatla ptekqfihtk skpsekprvl htkpaihqtt
     1141 pqpiitksst ttehsratma pketllipsk pktsvepevp qakpvpnety qisskpkiaq
     1201 ateipwfhta phktrltsar pkpsdksqmr palskttvap artiapglpk wivptdevyt
     1261 pedvdrqida dvkkpfeysh twekpfsvtt ppgprhppip pvkptqmrrk plppntvtgk
     1321 pgipakptgp tspvrtrtsy ktptafatpe yyvdatvfss sptsetdssg kpryqaphvm
     1381 ymkkdedvpc sitsslehfp qeevgtkeep trppqnpptn ltvvtvegcp tfvildwekp
     1441 endtvteyev vstengasdg ekeksiittn qthstvenlk pdtsyefhvk prnplgegps
     1501 snvvtfstes adprvsepis mgkdaiwtei pfnsdtysec kgkqyvkrtw ykkfvgvqlc
     1561 nslrykiyls dsltgkfyni gdqrghgedh cqfvdsfldg rtgqqedlpv kdgffravrq
     1621 epvkfgkigg ethinyvrwy ecgtsipgkw
//
LOCUS       XP_053912963            1650 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X10 [Cuculus canorus].
ACCESSION   XP_053912963
VERSION     XP_053912963.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056988.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1650
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1650
                     /product="target of Nesh-SH3 isoform X10"
                     /calculated_mol_wt=182493
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <762..1174
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     Region          <984..1419
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1416..1508
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1497..1498,1500..1501)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1650
                     /gene="ABI3BP"
                     /coded_by="XM_054056988.1:103..5055"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt
      601 faipempstk sategpglkf tshtstetrr smiafdenqh ipstsetsni kemlsavpvt
      661 qrselestsl hlanqetvea sqrpdlests stllettrtv katrrprlks ttpsslatqq
      721 tvmvtssadl eisipplsrt pyvltttial sgvqpvlssp vtpskpettd tgpatsesil
      781 esftpktsrp fqwprvtlap ksphlepkts htvekpkstl apkeakstps askprprart
      841 kkprtkpaat ipvsvttrsp ytyehpktae vlepitarve qprstiapke tqrfhskpkt
      901 spkphipqak dvlesitlrt dqlkptivpk etqrvpskhr iplssevpqt kpvlesitfr
      961 tekprsteap ketrrgpskp ktspsphvps traslkesrr vpskprasps pdvpytkpvl
     1021 tpttfrveqp ktatapkepq htpfkpktap tpdaphskpe iiptfhepdt tmiphipert
     1081 katlaptekq fihtkskpse kprvlhtkpa ihqttpqpii tksstttehs ratmapketl
     1141 lipskpktsv epevpqakpa pkathlgsin litvhvvdgs kmtlvpnety qisskpkiaq
     1201 ateipwfhta phktrltsar pkpsdksqmr palskttvap artiapglpk wivptdevyt
     1261 pedvdrqida dvkkpfeysh twekpfsvtt ppgprhppip pvkptqmrrk plppntvtgk
     1321 pgipakptgp tspvrtrtsy ktptafatpe yyvdatvfss sptsetdssg kpryqaphvm
     1381 ymkkdedvpc sitsslehfp qeevgtkeep trppqnpptn ltvvtvegcp tfvildwekp
     1441 endtvteyev vstengasdg ekeksiittn qthstvenlk pdtsyefhvk prnplgegps
     1501 snvvtfstes adprvsepis mgkdaiwtei pfnsdtysec kgkqyvkrtw ykkfvgvqlc
     1561 nslrykiyls dsltgkfyni gdqrghgedh cqfvdsfldg rtgqqedlpv kdgffravrq
     1621 epvkfgkigg ethinyvrwy ecgtsipgkw
//
LOCUS       XP_053912964            1650 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X11 [Cuculus canorus].
ACCESSION   XP_053912964
VERSION     XP_053912964.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056989.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1650
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1650
                     /product="target of Nesh-SH3 isoform X11"
                     /calculated_mol_wt=182490
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <437..862
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          <769..1251
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1416..1508
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1497..1498,1500..1501)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1650
                     /gene="ABI3BP"
                     /coded_by="XM_054056989.1:103..5055"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt
      601 faipempstk sategpglkf tshtstetrr smiafdenqh ipstsetsni kemlsavpvt
      661 qrselestsl hlanqetvea sqrpdlests stllettrtv katrrprlks ttpsslatqq
      721 tvmalsgvqp vlsspvtpsk pettdtgpat sesilesftp ktsrpfqwpr vtlapkeipl
      781 ipskvkpsat tevqlvkpap ksphlepkts htvekpkstl apkeakstps askprprart
      841 kkprtkpaat ipvsvttrsp ytyehpktae vlepitarve qprstiapke tqrfhskpkt
      901 spkphipqak dvlesitlrt dqlkptivpk etqrvpskhr iplssevpqt kpvlesitfr
      961 tekprsteap ketrrgpskp ktspsphvps traslkesrr vpskprasps pdvpytkpvl
     1021 tpttfrveqp ktatapkepq htpfkpktap tpdaphskpe iiptfhepdt tmiphipert
     1081 katlaptekq fihtkskpse kprvlhtkpa ihqttpqpii tksstttehs ratmapketl
     1141 lipskpktsv epevpqakpa pkathlgsin litvhvvdgs kmtlvpnety qisskpkiaq
     1201 ateipwfhta phktrltsar pkpsdksqmr palskttvap artiapglpk wivptdevyt
     1261 pedvdrqida dvkkpfeysh twekpfsvtt ppgprhppip pvkptqmrrk plppntvtgk
     1321 pgipakptgp tspvrtrtsy ktptafatpe yyvdatvfss sptsetdssg kpryqaphvm
     1381 ymkkdedvpc sitsslehfp qeevgtkeep trppqnpptn ltvvtvegcp tfvildwekp
     1441 endtvteyev vstengasdg ekeksiittn qthstvenlk pdtsyefhvk prnplgegps
     1501 snvvtfstes adprvsepis mgkdaiwtei pfnsdtysec kgkqyvkrtw ykkfvgvqlc
     1561 nslrykiyls dsltgkfyni gdqrghgedh cqfvdsfldg rtgqqedlpv kdgffravrq
     1621 epvkfgkigg ethinyvrwy ecgtsipgkw
//
LOCUS       XP_053912965            1650 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X12 [Cuculus canorus].
ACCESSION   XP_053912965
VERSION     XP_053912965.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056990.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1650
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1650
                     /product="target of Nesh-SH3 isoform X12"
                     /calculated_mol_wt=182666
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <710..1251
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1416..1508
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1497..1498,1500..1501)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1650
                     /gene="ABI3BP"
                     /coded_by="XM_054056990.1:103..5055"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memasydfhy vtstpqtfta
      421 seisdtagdt aeweismpis ttepqlletm ldldekkpls srsttlsmpe mpptsaatqr
      481 pdlestlsas lettrtvkat rrprlksttp aslatqqtim ashdftstlq tstsakmseq
      541 etvtfqapfk pvtsdnseae lasdetqpfs srsttfaipe mpstksateg pglkftshts
      601 tetrrsmiaf denqhipsts etsnikemls avpvtqrsel estslhlanq etveasqrpd
      661 lestsstlle ttrtvkatrr prlksttpss latqqtvmvt ssadleisip plsrtpyvlt
      721 ttialsgvqp vlsspvtpsk pettdtgpat sesilesftp ktsrpfqwpr vtlapkeipl
      781 ipskvkpsat tevqlvkpap ksphlepkts htvekpkstl apkeakstps askprprart
      841 kkprtkpaat ipvsvttrsp ytyehpktae vlepitarve qprstiapke tqrfhskpkt
      901 spkphipqak dvlesitlrt dqlkptivpk etqrvpskhr iplssevpqt kpvlesitfr
      961 tekprsteap ketrrgpskp ktspsphvps traslkesrr vpskprasps pdvpytkpvl
     1021 tpttfrveqp ktatapkepq htpfkpktap tpdaphskpe iiptfhepdt tmiphipert
     1081 katlaptekq fihtkskpse kprvlhtkpa ihqttpqpii tksstttehs ratmapketl
     1141 lipskpktsv epevpqakpa pkathlgsin litvhvvdgs kmtlvpnety qisskpkiaq
     1201 ateipwfhta phktrltsar pkpsdksqmr palskttvap artiapglpk wivptdevyt
     1261 pedvdrqida dvkkpfeysh twekpfsvtt ppgprhppip pvkptqmrrk plppntvtgk
     1321 pgipakptgp tspvrtrtsy ktptafatpe yyvdatvfss sptsetdssg kpryqaphvm
     1381 ymkkdedvpc sitsslehfp qeevgtkeep trppqnpptn ltvvtvegcp tfvildwekp
     1441 endtvteyev vstengasdg ekeksiittn qthstvenlk pdtsyefhvk prnplgegps
     1501 snvvtfstes adprvsepis mgkdaiwtei pfnsdtysec kgkqyvkrtw ykkfvgvqlc
     1561 nslrykiyls dsltgkfyni gdqrghgedh cqfvdsfldg rtgqqedlpv kdgffravrq
     1621 epvkfgkigg ethinyvrwy ecgtsipgkw
//
LOCUS       XP_053912966            1636 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X13 [Cuculus canorus].
ACCESSION   XP_053912966
VERSION     XP_053912966.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056991.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1636
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1636
                     /product="target of Nesh-SH3 isoform X13"
                     /calculated_mol_wt=180836
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <802..1404
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1402..1494
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1483..1484,1486..1487)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1636
                     /gene="ABI3BP"
                     /coded_by="XM_054056991.1:103..5013"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt
      601 faipempstk sategpglkf tshtstetrr smiafdenqh ipstsetsni kemlsavpvt
      661 qrselestsl hlanqetvea sqrpdlests stllettrtv katrrprlks ttpsslatqq
      721 tvmvtssadl eisipplsrt pyvltttial sgvqpvlssp vtpskpettd tgpatsesil
      781 esftpktsrp fqwprvtlap keiplipskv kpsattevql vkpapksphl epktshtvek
      841 pkstlapkea kstpsaskpr prartkkprt kpvlepitar veqprstiap ketqrfhskp
      901 ktspkphipq akdvpketqr vpskhripls sevpqtkpvl esitfrtekp rsteapketr
      961 rgpskpktsp sphvpstras lkesrrvpsk praspspdvp ytkpvltptt frveqpktat
     1021 apkepqhtpf kpktaptpda phskpeiipt fhepdttmip hipertkatl aptekqfiht
     1081 kskpsekprv lhtkpaihqt tpqpiitkss tttehsratm apketllips kpktsvepev
     1141 pqakpapkat hlgsinlitv hvvdgskmtl vpnetyqiss kpkiaqatei pwfhtaphkt
     1201 rltsarpkps dksqmrpals kttvaparti apglpkwivp tdevytpedv drqidadvkk
     1261 pfeyshtwek pfsvttppgp rhppippvkp tqmrrkplpp ntvtgkpgip akptgptspv
     1321 rtrtsyktpt afatpeyyvd atvfssspts etdssgkpry qaphvmymkk dedvpcsits
     1381 slehfpqeev gtkeeptrpp qnpptnltvv tvegcptfvi ldwekpendt vteyevvste
     1441 ngasdgekek siittnqths tvenlkpdts yefhvkprnp lgegpssnvv tfstesadpr
     1501 vsepismgkd aiwteipfns dtyseckgkq yvkrtwykkf vgvqlcnslr ykiylsdslt
     1561 gkfynigdqr ghgedhcqfv dsfldgrtgq qedlpvkdgf fravrqepvk fgkiggethi
     1621 nyvrwyecgt sipgkw
//
LOCUS       XP_053912967            1634 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X14 [Cuculus canorus].
ACCESSION   XP_053912967
VERSION     XP_053912967.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056992.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1634
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1634
                     /product="target of Nesh-SH3 isoform X14"
                     /calculated_mol_wt=180501
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <761..1235
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1400..1492
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1481..1482,1484..1485)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1634
                     /gene="ABI3BP"
                     /coded_by="XM_054056992.1:103..5007"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt
      601 faipempstk sategpglkf tshtstetrr smiafdenqh ipstsetsni kemlsavpvt
      661 qrselestsl hlanqetvea sqrpdlests stllettrtv katrrprlks ttpsslatqq
      721 tvmvtssadl eisipplsrt pyvltttial sgvqpvlssp vtpskpettd tgpatsesil
      781 esftpktsrp fqwprvtlap keiplipskv kpsattevql vkpapksphl epktshtvek
      841 pkstlapkea kstpsaskpr prartkkprt kpaatipvsv ttrspytyeh pktaevlepi
      901 tarveqprst ivpketqrvp skhriplsse vpqtkpvles itfrtekprs teapketrrg
      961 pskpktspsp hvpstraslk esrrvpskpr aspspdvpyt kpvltpttfr veqpktatap
     1021 kepqhtpfkp ktaptpdaph skpeiiptfh epdttmiphi pertkatlap tekqfihtks
     1081 kpsekprvlh tkpaihqttp qpiitksstt tehsratmap ketllipskp ktsvepevpq
     1141 akpapkathl gsinlitvhv vdgskmtlvp netyqisskp kiaqateipw fhtaphktrl
     1201 tsarpkpsdk sqmrpalskt tvapartiap glpkwivptd evytpedvdr qidadvkkpf
     1261 eyshtwekpf svttppgprh ppippvkptq mrrkplppnt vtgkpgipak ptgptspvrt
     1321 rtsyktptaf atpeyyvdat vfsssptset dssgkpryqa phvmymkkde dvpcsitssl
     1381 ehfpqeevgt keeptrppqn pptnltvvtv egcptfvild wekpendtvt eyevvsteng
     1441 asdgekeksi ittnqthstv enlkpdtsye fhvkprnplg egpssnvvtf stesadprvs
     1501 epismgkdai wteipfnsdt yseckgkqyv krtwykkfvg vqlcnslryk iylsdsltgk
     1561 fynigdqrgh gedhcqfvds fldgrtgqqe dlpvkdgffr avrqepvkfg kiggethiny
     1621 vrwyecgtsi pgkw
//
LOCUS       XP_053912968            1633 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X15 [Cuculus canorus].
ACCESSION   XP_053912968
VERSION     XP_053912968.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056993.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1633
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1633
                     /product="target of Nesh-SH3 isoform X15"
                     /calculated_mol_wt=180430
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <761..1234
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1399..1491
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1480..1481,1483..1484)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1633
                     /gene="ABI3BP"
                     /coded_by="XM_054056993.1:103..5004"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt
      601 faipempstk sategpglkf tshtstetrr smiafdenqh ipstsetsni kemlsavpvt
      661 qrselestsl hlanqetvea sqrpdlests stllettrtv katrrprlks ttpsslatqq
      721 tvmvtssadl eisipplsrt pyvltttial sgvqpvlssp vtpskpettd tgpatsesil
      781 esftpktsrp fqwprvtlap keiplipskv kpsattevql vkpapksphl epktshtvek
      841 pkstlapkea kstpsaskpr prartkkprt kpatipvsvt trspytyehp ktaevlepit
      901 arveqprsti vpketqrvps khriplssev pqtkpvlesi tfrtekprst eapketrrgp
      961 skpktspsph vpstraslke srrvpskpra spspdvpytk pvltpttfrv eqpktatapk
     1021 epqhtpfkpk taptpdaphs kpeiiptfhe pdttmiphip ertkatlapt ekqfihtksk
     1081 psekprvlht kpaihqttpq piitkssttt ehsratmapk etllipskpk tsvepevpqa
     1141 kpapkathlg sinlitvhvv dgskmtlvpn etyqisskpk iaqateipwf htaphktrlt
     1201 sarpkpsdks qmrpalsktt vapartiapg lpkwivptde vytpedvdrq idadvkkpfe
     1261 yshtwekpfs vttppgprhp pippvkptqm rrkplppntv tgkpgipakp tgptspvrtr
     1321 tsyktptafa tpeyyvdatv fsssptsetd ssgkpryqap hvmymkkded vpcsitssle
     1381 hfpqeevgtk eeptrppqnp ptnltvvtve gcptfvildw ekpendtvte yevvstenga
     1441 sdgekeksii ttnqthstve nlkpdtsyef hvkprnplge gpssnvvtfs tesadprvse
     1501 pismgkdaiw teipfnsdty seckgkqyvk rtwykkfvgv qlcnslryki ylsdsltgkf
     1561 ynigdqrghg edhcqfvdsf ldgrtgqqed lpvkdgffra vrqepvkfgk iggethinyv
     1621 rwyecgtsip gkw
//
LOCUS       XP_053912969            1632 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X16 [Cuculus canorus].
ACCESSION   XP_053912969
VERSION     XP_053912969.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056994.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1632
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1632
                     /product="target of Nesh-SH3 isoform X16"
                     /calculated_mol_wt=180390
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <484..884
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          <692..1233
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1398..1490
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1479..1480,1482..1483)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1632
                     /gene="ABI3BP"
                     /coded_by="XM_054056994.1:103..5001"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt
      601 faipempstk sategpglkf tshtstetrr smiafdenqh ipstsetsni kemlsavpat
      661 rrprlksttp sslatqqtvm vtssadleis ipplsrtpyv ltttialsgv qpvlsspvtp
      721 skpettdtgp atsesilesf tpktsrpfqw prvtlapkei plipskvkps attevqlvkp
      781 apksphlepk tshtvekpks tlapkeakst psaskprpra rtkkprtkpa atipvsvttr
      841 spytyehpkt aevlepitar veqprstiap ketqrfhskp ktspkphipq akdvlesitl
      901 rtdqlkptiv pketqrvpsk hriplssevp qtkpvlesit frtekprste apketrrgps
      961 kpktspsphv pstraslkes rrvpskpras pspdvpytkp vltpttfrve qpktatapke
     1021 pqhtpfkpkt aptpdaphsk peiiptfhep dttmiphipe rtkatlapte kqfihtkskp
     1081 sekprvlhtk paihqttpqp iitkssttte hsratmapke tllipskpkt svepevpqak
     1141 papkathlgs inlitvhvvd gskmtlvpne tyqisskpki aqateipwfh taphktrlts
     1201 arpkpsdksq mrpalskttv apartiapgl pkwivptdev ytpedvdrqi dadvkkpfey
     1261 shtwekpfsv ttppgprhpp ippvkptqmr rkplppntvt gkpgipakpt gptspvrtrt
     1321 syktptafat peyyvdatvf sssptsetds sgkpryqaph vmymkkdedv pcsitssleh
     1381 fpqeevgtke eptrppqnpp tnltvvtveg cptfvildwe kpendtvtey evvstengas
     1441 dgekeksiit tnqthstven lkpdtsyefh vkprnplgeg pssnvvtfst esadprvsep
     1501 ismgkdaiwt eipfnsdtys eckgkqyvkr twykkfvgvq lcnslrykiy lsdsltgkfy
     1561 nigdqrghge dhcqfvdsfl dgrtgqqedl pvkdgffrav rqepvkfgki ggethinyvr
     1621 wyecgtsipg kw
//
LOCUS       XP_053912970            1628 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X17 [Cuculus canorus].
ACCESSION   XP_053912970
VERSION     XP_053912970.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056995.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1628
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1628
                     /product="target of Nesh-SH3 isoform X17"
                     /calculated_mol_wt=180029
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <688..1229
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1394..1486
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1475..1476,1478..1479)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1628
                     /gene="ABI3BP"
                     /coded_by="XM_054056995.1:103..4989"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt
      601 faipempstk svtqrseles tslhlanqet veasqrpdle stsstllett rtvkatrrpr
      661 lksttpssla tqqtvmvtss adleisippl srtpyvlttt ialsgvqpvl sspvtpskpe
      721 ttdtgpatse silesftpkt srpfqwprvt lapkeiplip skvkpsatte vqlvkpapks
      781 phlepktsht vekpkstlap keakstpsas kprprartkk prtkpaatip vsvttrspyt
      841 yehpktaevl epitarveqp rstiapketq rfhskpktsp kphipqakdv lesitlrtdq
      901 lkptivpket qrvpskhrip lssevpqtkp vlesitfrte kprsteapke trrgpskpkt
      961 spsphvpstr aslkesrrvp skpraspspd vpytkpvltp ttfrveqpkt atapkepqht
     1021 pfkpktaptp daphskpeii ptfhepdttm iphipertka tlaptekqfi htkskpsekp
     1081 rvlhtkpaih qttpqpiitk sstttehsra tmapketlli pskpktsvep evpqakpapk
     1141 athlgsinli tvhvvdgskm tlvpnetyqi sskpkiaqat eipwfhtaph ktrltsarpk
     1201 psdksqmrpa lskttvapar tiapglpkwi vptdevytpe dvdrqidadv kkpfeyshtw
     1261 ekpfsvttpp gprhppippv kptqmrrkpl ppntvtgkpg ipakptgpts pvrtrtsykt
     1321 ptafatpeyy vdatvfsssp tsetdssgkp ryqaphvmym kkdedvpcsi tsslehfpqe
     1381 evgtkeeptr ppqnpptnlt vvtvegcptf vildwekpen dtvteyevvs tengasdgek
     1441 eksiittnqt hstvenlkpd tsyefhvkpr nplgegpssn vvtfstesad prvsepismg
     1501 kdaiwteipf nsdtyseckg kqyvkrtwyk kfvgvqlcns lrykiylsds ltgkfynigd
     1561 qrghgedhcq fvdsfldgrt gqqedlpvkd gffravrqep vkfgkigget hinyvrwyec
     1621 gtsipgkw
//
LOCUS       XP_053912971            1628 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X18 [Cuculus canorus].
ACCESSION   XP_053912971
VERSION     XP_053912971.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056996.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1628
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1628
                     /product="target of Nesh-SH3 isoform X18"
                     /calculated_mol_wt=180099
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          480..908
                     /region_name="DUF5585"
                     /note="Family of unknown function (DUF5585); pfam17823"
                     /db_xref="CDD:465521"
     Region          <759..1152
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     Region          <962..1397
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1394..1486
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1475..1476,1478..1479)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1628
                     /gene="ABI3BP"
                     /coded_by="XM_054056996.1:103..4989"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt
      601 faipempstk sategpglkf tshtstetrr smiafdenqh ipstsetsni kemlsavpvt
      661 qrselestsl hlanqetvea sqrpdlests stllettrtv katrrprlks ttpsslatqq
      721 tvmvtssadl eisipplsrt pyvltttial sgvqpvlssp vtpskpettd tgpatsesil
      781 esftpktsrp fqwprvtlap keakstpsas kprprartkk prtkpaatip vsvttrspyt
      841 yehpktaevl epitarveqp rstiapketq rfhskpktsp kphipqakdv lesitlrtdq
      901 lkptivpket qrvpskhrip lssevpqtkp vlesitfrte kprsteapke trrgpskpkt
      961 spsphvpstr aslkesrrvp skpraspspd vpytkpvltp ttfrveqpkt atapkepqht
     1021 pfkpktaptp daphskpeii ptfhepdttm iphipertka tlaptekqfi htkskpsekp
     1081 rvlhtkpaih qttpqpiitk sstttehsra tmapketlli pskpktsvep evpqakpapk
     1141 athlgsinli tvhvvdgskm tlvpnetyqi sskpkiaqat eipwfhtaph ktrltsarpk
     1201 psdksqmrpa lskttvapar tiapglpkwi vptdevytpe dvdrqidadv kkpfeyshtw
     1261 ekpfsvttpp gprhppippv kptqmrrkpl ppntvtgkpg ipakptgpts pvrtrtsykt
     1321 ptafatpeyy vdatvfsssp tsetdssgkp ryqaphvmym kkdedvpcsi tsslehfpqe
     1381 evgtkeeptr ppqnpptnlt vvtvegcptf vildwekpen dtvteyevvs tengasdgek
     1441 eksiittnqt hstvenlkpd tsyefhvkpr nplgegpssn vvtfstesad prvsepismg
     1501 kdaiwteipf nsdtyseckg kqyvkrtwyk kfvgvqlcns lrykiylsds ltgkfynigd
     1561 qrghgedhcq fvdsfldgrt gqqedlpvkd gffravrqep vkfgkigget hinyvrwyec
     1621 gtsipgkw
//
LOCUS       XP_053912973            1627 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X19 [Cuculus canorus].
ACCESSION   XP_053912973
VERSION     XP_053912973.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056998.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1627
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1627
                     /product="target of Nesh-SH3 isoform X19"
                     /calculated_mol_wt=180028
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          480..907
                     /region_name="DUF5585"
                     /note="Family of unknown function (DUF5585); pfam17823"
                     /db_xref="CDD:465521"
     Region          <762..1151
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     Region          <961..1396
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1393..1485
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1474..1475,1477..1478)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1627
                     /gene="ABI3BP"
                     /coded_by="XM_054056998.1:103..4986"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt
      601 faipempstk sategpglkf tshtstetrr smiafdenqh ipstsetsni kemlsavpvt
      661 qrselestsl hlanqetvea sqrpdlests stllettrtv katrrprlks ttpsslatqq
      721 tvmvtssadl eisipplsrt pyvltttial sgvqpvlssp vtpskpettd tgpatsesil
      781 esftpktsrp fqwprvtlap keakstpsas kprprartkk prtkpatipv svttrspyty
      841 ehpktaevle pitarveqpr stiapketqr fhskpktspk phipqakdvl esitlrtdql
      901 kptivpketq rvpskhripl ssevpqtkpv lesitfrtek prsteapket rrgpskpkts
      961 psphvpstra slkesrrvps kpraspspdv pytkpvltpt tfrveqpkta tapkepqhtp
     1021 fkpktaptpd aphskpeiip tfhepdttmi phipertkat laptekqfih tkskpsekpr
     1081 vlhtkpaihq ttpqpiitks stttehsrat mapketllip skpktsvepe vpqakpapka
     1141 thlgsinlit vhvvdgskmt lvpnetyqis skpkiaqate ipwfhtaphk trltsarpkp
     1201 sdksqmrpal skttvapart iapglpkwiv ptdevytped vdrqidadvk kpfeyshtwe
     1261 kpfsvttppg prhppippvk ptqmrrkplp pntvtgkpgi pakptgptsp vrtrtsyktp
     1321 tafatpeyyv datvfssspt setdssgkpr yqaphvmymk kdedvpcsit sslehfpqee
     1381 vgtkeeptrp pqnpptnltv vtvegcptfv ildwekpend tvteyevvst engasdgeke
     1441 ksiittnqth stvenlkpdt syefhvkprn plgegpssnv vtfstesadp rvsepismgk
     1501 daiwteipfn sdtyseckgk qyvkrtwykk fvgvqlcnsl rykiylsdsl tgkfynigdq
     1561 rghgedhcqf vdsfldgrtg qqedlpvkdg ffravrqepv kfgkiggeth inyvrwyecg
     1621 tsipgkw
//
LOCUS       XP_053912974            1625 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X20 [Cuculus canorus].
ACCESSION   XP_053912974
VERSION     XP_053912974.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054056999.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1625
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1625
                     /product="target of Nesh-SH3 isoform X20"
                     /calculated_mol_wt=179932
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <685..1226
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1391..1483
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1472..1473,1475..1476)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1625
                     /gene="ABI3BP"
                     /coded_by="XM_054056999.1:103..4980"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilat
      361 qspglkslps aetrememas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq
      421 lletmldlde kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl
      481 ksttpaslat qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde
      541 tqpfssrstt faipempstk sategpglkf tshtstetrr smiafdenqh ipstsetsni
      601 kemlsavpvt qrselestsl hlanqetvea sqrpdlests stllettrtv katrrprlks
      661 ttpsslatqq tvmvtssadl eisipplsrt pyvltttial sgvqpvlssp vtpskpettd
      721 tgpatsesil esftpktsrp fqwprvtlap keiplipskv kpsattevql vkpapksphl
      781 epktshtvek pkstlapkea kstpsaskpr prartkkprt kpaatipvsv ttrspytyeh
      841 pktaevlepi tarveqprst iapketqrfh skpktspkph ipqakdvles itlrtdqlkp
      901 tivpketqrv pskhriplss evpqtkpvle sitfrtekpr steapketrr gpskpktsps
      961 phvpstrasl kesrrvpskp raspspdvpy tkpvltpttf rveqpktata pkepqhtpfk
     1021 pktaptpdap hskpeiiptf hepdttmiph ipertkatla ptekqfihtk skpsekprvl
     1081 htkpaihqtt pqpiitksst ttehsratma pketllipsk pktsvepevp qakpapkath
     1141 lgsinlitvh vvdgskmtlv pnetyqissk pkiaqateip wfhtaphktr ltsarpkpsd
     1201 ksqmrpalsk ttvapartia pglpkwivpt devytpedvd rqidadvkkp feyshtwekp
     1261 fsvttppgpr hppippvkpt qmrrkplppn tvtgkpgipa kptgptspvr trtsyktpta
     1321 fatpeyyvda tvfsssptse tdssgkpryq aphvmymkkd edvpcsitss lehfpqeevg
     1381 tkeeptrppq npptnltvvt vegcptfvil dwekpendtv teyevvsten gasdgekeks
     1441 iittnqthst venlkpdtsy efhvkprnpl gegpssnvvt fstesadprv sepismgkda
     1501 iwteipfnsd tyseckgkqy vkrtwykkfv gvqlcnslry kiylsdsltg kfynigdqrg
     1561 hgedhcqfvd sfldgrtgqq edlpvkdgff ravrqepvkf gkiggethin yvrwyecgts
     1621 ipgkw
//
LOCUS       XP_053912975            1623 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X21 [Cuculus canorus].
ACCESSION   XP_053912975
VERSION     XP_053912975.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057000.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1623
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1623
                     /product="target of Nesh-SH3 isoform X21"
                     /calculated_mol_wt=179393
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <683..1224
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1389..1481
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1470..1471,1473..1474)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1623
                     /gene="ABI3BP"
                     /coded_by="XM_054057000.1:103..4974"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl patqspglks lpsaetreme maseetqlvs
      361 sgsktsgtte vqptssasyd fhyvtstpqt ftaseisdta gdtaeweism pisttepqll
      421 etmldldekk plssrsttls mpempptsaa tqrpdlestl saslettrtv katrrprlks
      481 ttpaslatqq timashdfts tlqtstsakm seqetvtfqa pfkpvtsdns eaelasdetq
      541 pfssrsttfa ipempstksa tegpglkfts htstetrrsm iafdenqhip stsetsnike
      601 mlsavpvtqr selestslhl anqetveasq rpdlestsst llettrtvka trrprlkstt
      661 psslatqqtv mvtssadlei sipplsrtpy vltttialsg vqpvlsspvt pskpettdtg
      721 patsesiles ftpktsrpfq wprvtlapke iplipskvkp sattevqlvk papksphlep
      781 ktshtvekpk stlapkeaks tpsaskprpr artkkprtkp aatipvsvtt rspytyehpk
      841 taevlepita rveqprstia pketqrfhsk pktspkphip qakdvlesit lrtdqlkpti
      901 vpketqrvps khriplssev pqtkpvlesi tfrtekprst eapketrrgp skpktspsph
      961 vpstraslke srrvpskpra spspdvpytk pvltpttfrv eqpktatapk epqhtpfkpk
     1021 taptpdaphs kpeiiptfhe pdttmiphip ertkatlapt ekqfihtksk psekprvlht
     1081 kpaihqttpq piitkssttt ehsratmapk etllipskpk tsvepevpqa kpapkathlg
     1141 sinlitvhvv dgskmtlvpn etyqisskpk iaqateipwf htaphktrlt sarpkpsdks
     1201 qmrpalsktt vapartiapg lpkwivptde vytpedvdrq idadvkkpfe yshtwekpfs
     1261 vttppgprhp pippvkptqm rrkplppntv tgkpgipakp tgptspvrtr tsyktptafa
     1321 tpeyyvdatv fsssptsetd ssgkpryqap hvmymkkded vpcsitssle hfpqeevgtk
     1381 eeptrppqnp ptnltvvtve gcptfvildw ekpendtvte yevvstenga sdgekeksii
     1441 ttnqthstve nlkpdtsyef hvkprnplge gpssnvvtfs tesadprvse pismgkdaiw
     1501 teipfnsdty seckgkqyvk rtwykkfvgv qlcnslryki ylsdsltgkf ynigdqrghg
     1561 edhcqfvdsf ldgrtgqqed lpvkdgffra vrqepvkfgk iggethinyv rwyecgtsip
     1621 gkw
//
LOCUS       XP_053912976            1618 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X22 [Cuculus canorus].
ACCESSION   XP_053912976
VERSION     XP_053912976.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057001.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1618
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1618
                     /product="target of Nesh-SH3 isoform X22"
                     /calculated_mol_wt=178710
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <761..1219
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1384..1476
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1465..1466,1468..1469)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1618
                     /gene="ABI3BP"
                     /coded_by="XM_054057001.1:103..4959"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt
      601 faipempstk sategpglkf tshtstetrr smiafdenqh ipstsetsni kemlsavpvt
      661 qrselestsl hlanqetvea sqrpdlests stllettrtv katrrprlks ttpsslatqq
      721 tvmvtssadl eisipplsrt pyvltttial sgvqpvlssp vtpskpettd tgpatsesil
      781 esftpktsrp fqwprvtlap keiplipskv kpsattevql vkpapksphl epktshtvek
      841 pkstlapkea kstpsaskpr prartkkprt kpaatipvsv ttrspytyeh pktaevpket
      901 qrvpskhrip lssevpqtkp vlesitfrte kprsteapke trrgpskpkt spsphvpstr
      961 aslkesrrvp skpraspspd vpytkpvltp ttfrveqpkt atapkepqht pfkpktaptp
     1021 daphskpeii ptfhepdttm iphipertka tlaptekqfi htkskpsekp rvlhtkpaih
     1081 qttpqpiitk sstttehsra tmapketlli pskpktsvep evpqakpapk athlgsinli
     1141 tvhvvdgskm tlvpnetyqi sskpkiaqat eipwfhtaph ktrltsarpk psdksqmrpa
     1201 lskttvapar tiapglpkwi vptdevytpe dvdrqidadv kkpfeyshtw ekpfsvttpp
     1261 gprhppippv kptqmrrkpl ppntvtgkpg ipakptgpts pvrtrtsykt ptafatpeyy
     1321 vdatvfsssp tsetdssgkp ryqaphvmym kkdedvpcsi tsslehfpqe evgtkeeptr
     1381 ppqnpptnlt vvtvegcptf vildwekpen dtvteyevvs tengasdgek eksiittnqt
     1441 hstvenlkpd tsyefhvkpr nplgegpssn vvtfstesad prvsepismg kdaiwteipf
     1501 nsdtyseckg kqyvkrtwyk kfvgvqlcns lrykiylsds ltgkfynigd qrghgedhcq
     1561 fvdsfldgrt gqqedlpvkd gffravrqep vkfgkigget hinyvrwyec gtsipgkw
//
LOCUS       XP_053912977            1611 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X23 [Cuculus canorus].
ACCESSION   XP_053912977
VERSION     XP_053912977.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057002.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1611
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1611
                     /product="target of Nesh-SH3 isoform X23"
                     /calculated_mol_wt=178217
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <736..1212
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1377..1469
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1458..1459,1461..1462)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1611
                     /gene="ABI3BP"
                     /coded_by="XM_054057002.1:103..4938"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt
      601 faipempstk sategpglkf tshtstetrr smiafdenqh ipstsetsni kemlsavpvt
      661 qrselestsl hlanqetvea sqrpdlests stllettrtv katrrprlks ttpsslatqq
      721 tvmalsgvqp vlsspvtpsk pettdtgpat sesilesftp ktsrpfqwpr vtlapkeipl
      781 ipskvkpsat tevqlvkpap ksphlepkts htvekpkstl apkeakstps askprprart
      841 kkprtkpvle pitarveqpr stiapketqr fhskpktspk phipqakdvl esitlrtdql
      901 kptivpketq rvpskhripl ssevpqtkpv lesitfrtek prsteapket rrgpskpkts
      961 psphvpstra slkesrrvps kpraspspdv pytkpapkep qhtpfkpkta ptpdaphskp
     1021 eiiptfhepd ttmiphiper tkatlaptek qfihtkskps ekprvlhtkp aihqttpqpi
     1081 itkssttteh sratmapket llipskpkts vepevpqakp apkathlgsi nlitvhvvdg
     1141 skmtlvpnet yqisskpkia qateipwfht aphktrltsa rpkpsdksqm rpalskttva
     1201 partiapglp kwivptdevy tpedvdrqid advkkpfeys htwekpfsvt tppgprhppi
     1261 ppvkptqmrr kplppntvtg kpgipakptg ptspvrtrts yktptafatp eyyvdatvfs
     1321 ssptsetdss gkpryqaphv mymkkdedvp csitsslehf pqeevgtkee ptrppqnppt
     1381 nltvvtvegc ptfvildwek pendtvteye vvstengasd gekeksiitt nqthstvenl
     1441 kpdtsyefhv kprnplgegp ssnvvtfste sadprvsepi smgkdaiwte ipfnsdtyse
     1501 ckgkqyvkrt wykkfvgvql cnslrykiyl sdsltgkfyn igdqrghged hcqfvdsfld
     1561 grtgqqedlp vkdgffravr qepvkfgkig gethinyvrw yecgtsipgk w
//
LOCUS       XP_053912978            1611 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X24 [Cuculus canorus].
ACCESSION   XP_053912978
VERSION     XP_053912978.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057003.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1611
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1611
                     /product="target of Nesh-SH3 isoform X24"
                     /calculated_mol_wt=177999
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <680..1129
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <945..1380
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1377..1469
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1458..1459,1461..1462)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1611
                     /gene="ABI3BP"
                     /coded_by="XM_054057003.1:103..4938"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt
      601 faipempstk sategpglkf tshtstetrr smiafdenqh ipstsetsni kemlsavpvt
      661 qrselestsl hlanqetvea sqrpdlests stllettrtv katrrprlks ttpsslatqq
      721 tvmvtssadl eisipplsrt pyvltttial sgvqpvlssp vtpskpettd tgpatsesil
      781 esftpktsrp fqwprvtlap keiplipskv kpsattevql vkpapksphl epktshtvek
      841 pkstlapkea kstpsaskpr prartkkprt kpvlepitar veqprstivp ketqrvpskh
      901 riplssevpq tkpvlesitf rtekprstea pketrrgpsk pktspsphvp straslkesr
      961 rvpskprasp spdvpytkpv ltpttfrveq pktatapkep qhtpfkpkta ptpdaphskp
     1021 eiiptfhepd ttmiphiper tkatlaptek qfihtkskps ekprvlhtkp aihqttpqpi
     1081 itkssttteh sratmapket llipskpkts vepevpqakp apkathlgsi nlitvhvvdg
     1141 skmtlvpnet yqisskpkia qateipwfht aphktrltsa rpkpsdksqm rpalskttva
     1201 partiapglp kwivptdevy tpedvdrqid advkkpfeys htwekpfsvt tppgprhppi
     1261 ppvkptqmrr kplppntvtg kpgipakptg ptspvrtrts yktptafatp eyyvdatvfs
     1321 ssptsetdss gkpryqaphv mymkkdedvp csitsslehf pqeevgtkee ptrppqnppt
     1381 nltvvtvegc ptfvildwek pendtvteye vvstengasd gekeksiitt nqthstvenl
     1441 kpdtsyefhv kprnplgegp ssnvvtfste sadprvsepi smgkdaiwte ipfnsdtyse
     1501 ckgkqyvkrt wykkfvgvql cnslrykiyl sdsltgkfyn igdqrghged hcqfvdsfld
     1561 grtgqqedlp vkdgffravr qepvkfgkig gethinyvrw yecgtsipgk w
//
LOCUS       XP_053912979            1605 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X25 [Cuculus canorus].
ACCESSION   XP_053912979
VERSION     XP_053912979.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057004.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1605
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1605
                     /product="target of Nesh-SH3 isoform X25"
                     /calculated_mol_wt=177786
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <665..1206
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1371..1463
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1452..1453,1455..1456)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1605
                     /gene="ABI3BP"
                     /coded_by="XM_054057004.1:103..4920"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde kkplssrstt
      421 lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat qqtimashdf
      481 tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt faipempstk
      541 sategpglkf tshtstetrr smiafdenqh ipstsetsni kemlsavpvt qrselestsl
      601 hlanqetvea sqrpdlests stllettrtv katrrprlks ttpsslatqq tvmvtssadl
      661 eisipplsrt pyvltttial sgvqpvlssp vtpskpettd tgpatsesil esftpktsrp
      721 fqwprvtlap keiplipskv kpsattevql vkpapksphl epktshtvek pkstlapkea
      781 kstpsaskpr prartkkprt kpaatipvsv ttrspytyeh pktaevlepi tarveqprst
      841 iapketqrfh skpktspkph ipqakdvles itlrtdqlkp tivpketqrv pskhriplss
      901 evpqtkpvle sitfrtekpr steapketrr gpskpktsps phvpstrasl kesrrvpskp
      961 raspspdvpy tkpvltpttf rveqpktata pkepqhtpfk pktaptpdap hskpeiiptf
     1021 hepdttmiph ipertkatla ptekqfihtk skpsekprvl htkpaihqtt pqpiitksst
     1081 ttehsratma pketllipsk pktsvepevp qakpapkath lgsinlitvh vvdgskmtlv
     1141 pnetyqissk pkiaqateip wfhtaphktr ltsarpkpsd ksqmrpalsk ttvapartia
     1201 pglpkwivpt devytpedvd rqidadvkkp feyshtwekp fsvttppgpr hppippvkpt
     1261 qmrrkplppn tvtgkpgipa kptgptspvr trtsyktpta fatpeyyvda tvfsssptse
     1321 tdssgkpryq aphvmymkkd edvpcsitss lehfpqeevg tkeeptrppq npptnltvvt
     1381 vegcptfvil dwekpendtv teyevvsten gasdgekeks iittnqthst venlkpdtsy
     1441 efhvkprnpl gegpssnvvt fstesadprv sepismgkda iwteipfnsd tyseckgkqy
     1501 vkrtwykkfv gvqlcnslry kiylsdsltg kfynigdqrg hgedhcqfvd sfldgrtgqq
     1561 edlpvkdgff ravrqepvkf gkiggethin yvrwyecgts ipgkw
//
LOCUS       XP_053912980            1605 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X26 [Cuculus canorus].
ACCESSION   XP_053912980
VERSION     XP_053912980.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057005.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1605
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1605
                     /product="target of Nesh-SH3 isoform X26"
                     /calculated_mol_wt=177597
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          480..>878
                     /region_name="DUF5585"
                     /note="Family of unknown function (DUF5585); pfam17823"
                     /db_xref="CDD:465521"
     Region          <735..1373
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1371..1463
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1452..1453,1455..1456)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1605
                     /gene="ABI3BP"
                     /coded_by="XM_054057005.1:103..4920"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt
      601 faipempstk sategpglkf tshtstetrr smiafdenqh ipstsetsni kemlsavpvt
      661 qrselestsl hlanqetvea sqrpdlests stllettrtv katrrprlks ttpsslatqq
      721 tvmvtssadl eisipplsrt pyvltttial sgvqpvlssp vtpskpettd tgpatsesil
      781 esftpktsrp fqwprvtlap keakstpsas kprprartkk prtkpvlepi tarveqprst
      841 iapketqrfh skpktspkph ipqakdvles itlrtdqlkp tivpketqrv pskhriplss
      901 evpqtkpvle sitfrtekpr steapketrr gpskpktsps phvpstrasl kesrrvpskp
      961 raspspdvpy tkpvltpttf rveqpktata pkepqhtpfk pktaptpdap hskpeiiptf
     1021 hepdttmiph ipertkatla ptekqfihtk skpsekprvl htkpaihqtt pqpiitksst
     1081 ttehsratma pketllipsk pktsvepevp qakpapkath lgsinlitvh vvdgskmtlv
     1141 pnetyqissk pkiaqateip wfhtaphktr ltsarpkpsd ksqmrpalsk ttvapartia
     1201 pglpkwivpt devytpedvd rqidadvkkp feyshtwekp fsvttppgpr hppippvkpt
     1261 qmrrkplppn tvtgkpgipa kptgptspvr trtsyktpta fatpeyyvda tvfsssptse
     1321 tdssgkpryq aphvmymkkd edvpcsitss lehfpqeevg tkeeptrppq npptnltvvt
     1381 vegcptfvil dwekpendtv teyevvsten gasdgekeks iittnqthst venlkpdtsy
     1441 efhvkprnpl gegpssnvvt fstesadprv sepismgkda iwteipfnsd tyseckgkqy
     1501 vkrtwykkfv gvqlcnslry kiylsdsltg kfynigdqrg hgedhcqfvd sfldgrtgqq
     1561 edlpvkdgff ravrqepvkf gkiggethin yvrwyecgts ipgkw
//
LOCUS       XP_053912981            1603 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X27 [Cuculus canorus].
ACCESSION   XP_053912981
VERSION     XP_053912981.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057006.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1603
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1603
                     /product="target of Nesh-SH3 isoform X27"
                     /calculated_mol_wt=177344
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <663..1204
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1369..1461
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1450..1451,1453..1454)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1603
                     /gene="ABI3BP"
                     /coded_by="XM_054057006.1:103..4914"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelvtqr selestslhl
      601 anqetveasq rpdlestsst llettrtvka trrprlkstt psslatqqtv mvtssadlei
      661 sipplsrtpy vltttialsg vqpvlsspvt pskpettdtg patsesiles ftpktsrpfq
      721 wprvtlapke iplipskvkp sattevqlvk papksphlep ktshtvekpk stlapkeaks
      781 tpsaskprpr artkkprtkp aatipvsvtt rspytyehpk taevlepita rveqprstia
      841 pketqrfhsk pktspkphip qakdvlesit lrtdqlkpti vpketqrvps khriplssev
      901 pqtkpvlesi tfrtekprst eapketrrgp skpktspsph vpstraslke srrvpskpra
      961 spspdvpytk pvltpttfrv eqpktatapk epqhtpfkpk taptpdaphs kpeiiptfhe
     1021 pdttmiphip ertkatlapt ekqfihtksk psekprvlht kpaihqttpq piitkssttt
     1081 ehsratmapk etllipskpk tsvepevpqa kpapkathlg sinlitvhvv dgskmtlvpn
     1141 etyqisskpk iaqateipwf htaphktrlt sarpkpsdks qmrpalsktt vapartiapg
     1201 lpkwivptde vytpedvdrq idadvkkpfe yshtwekpfs vttppgprhp pippvkptqm
     1261 rrkplppntv tgkpgipakp tgptspvrtr tsyktptafa tpeyyvdatv fsssptsetd
     1321 ssgkpryqap hvmymkkded vpcsitssle hfpqeevgtk eeptrppqnp ptnltvvtve
     1381 gcptfvildw ekpendtvte yevvstenga sdgekeksii ttnqthstve nlkpdtsyef
     1441 hvkprnplge gpssnvvtfs tesadprvse pismgkdaiw teipfnsdty seckgkqyvk
     1501 rtwykkfvgv qlcnslryki ylsdsltgkf ynigdqrghg edhcqfvdsf ldgrtgqqed
     1561 lpvkdgffra vrqepvkfgk iggethinyv rwyecgtsip gkw
//
LOCUS       XP_053912982            1603 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X28 [Cuculus canorus].
ACCESSION   XP_053912982
VERSION     XP_053912982.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057007.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1603
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1603
                     /product="target of Nesh-SH3 isoform X28"
                     /calculated_mol_wt=177237
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          473..883
                     /region_name="DUF5585"
                     /note="Family of unknown function (DUF5585); pfam17823"
                     /db_xref="CDD:465521"
     Region          <709..1204
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1369..1461
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1450..1451,1453..1454)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1603
                     /gene="ABI3BP"
                     /coded_by="XM_054057007.1:103..4914"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt
      601 faipempstk sategpglkf tshtstetrr smiafdenqh ipstsetsni kemlsavpvt
      661 qrselestsl hlanqetvea sqrpdlests stllettrtv katrrprlks ttpsslatqq
      721 tvmvtssadl eisipplsrt pyvltttial sgvqpvlssp vtpskpettd tgpapkeaks
      781 tpsaskprpr artkkprtkp aatipvsvtt rspytyehpk taevlepita rveqprstia
      841 pketqrfhsk pktspkphip qakdvlesit lrtdqlkpti vpketqrvps khriplssev
      901 pqtkpvlesi tfrtekprst eapketrrgp skpktspsph vpstraslke srrvpskpra
      961 spspdvpytk pvltpttfrv eqpktatapk epqhtpfkpk taptpdaphs kpeiiptfhe
     1021 pdttmiphip ertkatlapt ekqfihtksk psekprvlht kpaihqttpq piitkssttt
     1081 ehsratmapk etllipskpk tsvepevpqa kpapkathlg sinlitvhvv dgskmtlvpn
     1141 etyqisskpk iaqateipwf htaphktrlt sarpkpsdks qmrpalsktt vapartiapg
     1201 lpkwivptde vytpedvdrq idadvkkpfe yshtwekpfs vttppgprhp pippvkptqm
     1261 rrkplppntv tgkpgipakp tgptspvrtr tsyktptafa tpeyyvdatv fsssptsetd
     1321 ssgkpryqap hvmymkkded vpcsitssle hfpqeevgtk eeptrppqnp ptnltvvtve
     1381 gcptfvildw ekpendtvte yevvstenga sdgekeksii ttnqthstve nlkpdtsyef
     1441 hvkprnplge gpssnvvtfs tesadprvse pismgkdaiw teipfnsdty seckgkqyvk
     1501 rtwykkfvgv qlcnslryki ylsdsltgkf ynigdqrghg edhcqfvdsf ldgrtgqqed
     1561 lpvkdgffra vrqepvkfgk iggethinyv rwyecgtsip gkw
//
LOCUS       XP_053912984            1602 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X29 [Cuculus canorus].
ACCESSION   XP_053912984
VERSION     XP_053912984.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057009.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1602
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1602
                     /product="target of Nesh-SH3 isoform X29"
                     /calculated_mol_wt=177166
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          480..882
                     /region_name="DUF5585"
                     /note="Family of unknown function (DUF5585); pfam17823"
                     /db_xref="CDD:465521"
     Region          <709..1203
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1368..1460
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1449..1450,1452..1453)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1602
                     /gene="ABI3BP"
                     /coded_by="XM_054057009.1:103..4911"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt
      601 faipempstk sategpglkf tshtstetrr smiafdenqh ipstsetsni kemlsavpvt
      661 qrselestsl hlanqetvea sqrpdlests stllettrtv katrrprlks ttpsslatqq
      721 tvmvtssadl eisipplsrt pyvltttial sgvqpvlssp vtpskpettd tgpapkeaks
      781 tpsaskprpr artkkprtkp atipvsvttr spytyehpkt aevlepitar veqprstiap
      841 ketqrfhskp ktspkphipq akdvlesitl rtdqlkptiv pketqrvpsk hriplssevp
      901 qtkpvlesit frtekprste apketrrgps kpktspsphv pstraslkes rrvpskpras
      961 pspdvpytkp vltpttfrve qpktatapke pqhtpfkpkt aptpdaphsk peiiptfhep
     1021 dttmiphipe rtkatlapte kqfihtkskp sekprvlhtk paihqttpqp iitkssttte
     1081 hsratmapke tllipskpkt svepevpqak papkathlgs inlitvhvvd gskmtlvpne
     1141 tyqisskpki aqateipwfh taphktrlts arpkpsdksq mrpalskttv apartiapgl
     1201 pkwivptdev ytpedvdrqi dadvkkpfey shtwekpfsv ttppgprhpp ippvkptqmr
     1261 rkplppntvt gkpgipakpt gptspvrtrt syktptafat peyyvdatvf sssptsetds
     1321 sgkpryqaph vmymkkdedv pcsitssleh fpqeevgtke eptrppqnpp tnltvvtveg
     1381 cptfvildwe kpendtvtey evvstengas dgekeksiit tnqthstven lkpdtsyefh
     1441 vkprnplgeg pssnvvtfst esadprvsep ismgkdaiwt eipfnsdtys eckgkqyvkr
     1501 twykkfvgvq lcnslrykiy lsdsltgkfy nigdqrghge dhcqfvdsfl dgrtgqqedl
     1561 pvkdgffrav rqepvkfgki ggethinyvr wyecgtsipg kw
//
LOCUS       XP_053912985            1585 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X30 [Cuculus canorus].
ACCESSION   XP_053912985
VERSION     XP_053912985.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057010.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1585
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1585
                     /product="target of Nesh-SH3 isoform X30"
                     /calculated_mol_wt=175321
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <704..1186
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1351..1443
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1432..1433,1435..1436)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1585
                     /gene="ABI3BP"
                     /coded_by="XM_054057010.1:103..4860"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt
      601 faipempstk sategpglkf tshtstetrr smiafdenqh ipstsetsni kemlsavpal
      661 sgvqpvlssp vtpskpettd tgpatsesil esftpktsrp fqwprvtlap keiplipskv
      721 kpsattevql vkpapksphl epktshtvek pkstlapkea kstpsaskpr prartkkprt
      781 kpaatipvsv ttrspytyeh pktaevlepi tarveqprst iapketqrfh skpktspkph
      841 ipqakdvles itlrtdqlkp tivpketqrv pskhriplss evpqtkpvle sitfrtekpr
      901 steapketrr gpskpktsps phvpstrasl kesrrvpskp raspspdvpy tkpvltpttf
      961 rveqpktata pkepqhtpfk pktaptpdap hskpeiiptf hepdttmiph ipertkatla
     1021 ptekqfihtk skpsekprvl htkpaihqtt pqpiitksst ttehsratma pketllipsk
     1081 pktsvepevp qakpapkath lgsinlitvh vvdgskmtlv pnetyqissk pkiaqateip
     1141 wfhtaphktr ltsarpkpsd ksqmrpalsk ttvapartia pglpkwivpt devytpedvd
     1201 rqidadvkkp feyshtwekp fsvttppgpr hppippvkpt qmrrkplppn tvtgkpgipa
     1261 kptgptspvr trtsyktpta fatpeyyvda tvfsssptse tdssgkpryq aphvmymkkd
     1321 edvpcsitss lehfpqeevg tkeeptrppq npptnltvvt vegcptfvil dwekpendtv
     1381 teyevvsten gasdgekeks iittnqthst venlkpdtsy efhvkprnpl gegpssnvvt
     1441 fstesadprv sepismgkda iwteipfnsd tyseckgkqy vkrtwykkfv gvqlcnslry
     1501 kiylsdsltg kfynigdqrg hgedhcqfvd sfldgrtgqq edlpvkdgff ravrqepvkf
     1561 gkiggethin yvrwyecgts ipgkw
//
LOCUS       XP_053912986            1584 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X31 [Cuculus canorus].
ACCESSION   XP_053912986
VERSION     XP_053912986.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057011.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1584
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1584
                     /product="target of Nesh-SH3 isoform X31"
                     /calculated_mol_wt=175282
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          482..>636
                     /region_name="PRK13335"
                     /note="superantigen-like protein SSL3; Reviewed"
                     /db_xref="CDD:139494"
     Region          <644..1185
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1350..1442
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1431..1432,1434..1435)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1584
                     /gene="ABI3BP"
                     /coded_by="XM_054057011.1:103..4857"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtq rselestslh lanqetveas qrpdlestss
      601 tllettrtvk atrrprlkst tpsslatqqt vmvtssadle isipplsrtp yvltttials
      661 gvqpvlsspv tpskpettdt gpatsesile sftpktsrpf qwprvtlapk eiplipskvk
      721 psattevqlv kpapksphle pktshtvekp kstlapkeak stpsaskprp rartkkprtk
      781 paatipvsvt trspytyehp ktaevlepit arveqprsti apketqrfhs kpktspkphi
      841 pqakdvlesi tlrtdqlkpt ivpketqrvp skhriplsse vpqtkpvles itfrtekprs
      901 teapketrrg pskpktspsp hvpstraslk esrrvpskpr aspspdvpyt kpvltpttfr
      961 veqpktatap kepqhtpfkp ktaptpdaph skpeiiptfh epdttmiphi pertkatlap
     1021 tekqfihtks kpsekprvlh tkpaihqttp qpiitksstt tehsratmap ketllipskp
     1081 ktsvepevpq akpapkathl gsinlitvhv vdgskmtlvp netyqisskp kiaqateipw
     1141 fhtaphktrl tsarpkpsdk sqmrpalskt tvapartiap glpkwivptd evytpedvdr
     1201 qidadvkkpf eyshtwekpf svttppgprh ppippvkptq mrrkplppnt vtgkpgipak
     1261 ptgptspvrt rtsyktptaf atpeyyvdat vfsssptset dssgkpryqa phvmymkkde
     1321 dvpcsitssl ehfpqeevgt keeptrppqn pptnltvvtv egcptfvild wekpendtvt
     1381 eyevvsteng asdgekeksi ittnqthstv enlkpdtsye fhvkprnplg egpssnvvtf
     1441 stesadprvs epismgkdai wteipfnsdt yseckgkqyv krtwykkfvg vqlcnslryk
     1501 iylsdsltgk fynigdqrgh gedhcqfvds fldgrtgqqe dlpvkdgffr avrqepvkfg
     1561 kiggethiny vrwyecgtsi pgkw
//
LOCUS       XP_053912987            1580 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X32 [Cuculus canorus].
ACCESSION   XP_053912987
VERSION     XP_053912987.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057012.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1580
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1580
                     /product="target of Nesh-SH3 isoform X32"
                     /calculated_mol_wt=174736
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          473..>853
                     /region_name="DUF5585"
                     /note="Family of unknown function (DUF5585); pfam17823"
                     /db_xref="CDD:465521"
     Region          <763..1095
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     Region          <914..1349
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1346..1438
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1427..1428,1430..1431)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1580
                     /gene="ABI3BP"
                     /coded_by="XM_054057012.1:103..4845"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt
      601 faipempstk sategpglkf tshtstetrr smiafdenqh ipstsetsni kemlsavpvt
      661 qrselestsl hlanqetvea sqrpdlests stllettrtv katrrprlks ttpsslatqq
      721 tvmvtssadl eisipplsrt pyvltttial sgvqpvlssp vtpskpettd tgpapkeaks
      781 tpsaskprpr artkkprtkp vlepitarve qprstiapke tqrfhskpkt spkphipqak
      841 dvlesitlrt dqlkptivpk etqrvpskhr iplssevpqt kpvlesitfr tekprsteap
      901 ketrrgpskp ktspsphvps traslkesrr vpskprasps pdvpytkpvl tpttfrveqp
      961 ktatapkepq htpfkpktap tpdaphskpe iiptfhepdt tmiphipert katlaptekq
     1021 fihtkskpse kprvlhtkpa ihqttpqpii tksstttehs ratmapketl lipskpktsv
     1081 epevpqakpa pkathlgsin litvhvvdgs kmtlvpnety qisskpkiaq ateipwfhta
     1141 phktrltsar pkpsdksqmr palskttvap artiapglpk wivptdevyt pedvdrqida
     1201 dvkkpfeysh twekpfsvtt ppgprhppip pvkptqmrrk plppntvtgk pgipakptgp
     1261 tspvrtrtsy ktptafatpe yyvdatvfss sptsetdssg kpryqaphvm ymkkdedvpc
     1321 sitsslehfp qeevgtkeep trppqnpptn ltvvtvegcp tfvildwekp endtvteyev
     1381 vstengasdg ekeksiittn qthstvenlk pdtsyefhvk prnplgegps snvvtfstes
     1441 adprvsepis mgkdaiwtei pfnsdtysec kgkqyvkrtw ykkfvgvqlc nslrykiyls
     1501 dsltgkfyni gdqrghgedh cqfvdsfldg rtgqqedlpv kdgffravrq epvkfgkigg
     1561 ethinyvrwy ecgtsipgkw
//
LOCUS       XP_053912988            1563 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X33 [Cuculus canorus].
ACCESSION   XP_053912988
VERSION     XP_053912988.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057013.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1563
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1563
                     /product="target of Nesh-SH3 isoform X33"
                     /calculated_mol_wt=172928
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <623..1164
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1329..1421
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1410..1411,1413..1414)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1563
                     /gene="ABI3BP"
                     /coded_by="XM_054057013.1:103..4794"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetasq rpdlestsst llettrtvka trrprlkstt
      601 psslatqqtv mvtssadlei sipplsrtpy vltttialsg vqpvlsspvt pskpettdtg
      661 patsesiles ftpktsrpfq wprvtlapke iplipskvkp sattevqlvk papksphlep
      721 ktshtvekpk stlapkeaks tpsaskprpr artkkprtkp aatipvsvtt rspytyehpk
      781 taevlepita rveqprstia pketqrfhsk pktspkphip qakdvlesit lrtdqlkpti
      841 vpketqrvps khriplssev pqtkpvlesi tfrtekprst eapketrrgp skpktspsph
      901 vpstraslke srrvpskpra spspdvpytk pvltpttfrv eqpktatapk epqhtpfkpk
      961 taptpdaphs kpeiiptfhe pdttmiphip ertkatlapt ekqfihtksk psekprvlht
     1021 kpaihqttpq piitkssttt ehsratmapk etllipskpk tsvepevpqa kpapkathlg
     1081 sinlitvhvv dgskmtlvpn etyqisskpk iaqateipwf htaphktrlt sarpkpsdks
     1141 qmrpalsktt vapartiapg lpkwivptde vytpedvdrq idadvkkpfe yshtwekpfs
     1201 vttppgprhp pippvkptqm rrkplppntv tgkpgipakp tgptspvrtr tsyktptafa
     1261 tpeyyvdatv fsssptsetd ssgkpryqap hvmymkkded vpcsitssle hfpqeevgtk
     1321 eeptrppqnp ptnltvvtve gcptfvildw ekpendtvte yevvstenga sdgekeksii
     1381 ttnqthstve nlkpdtsyef hvkprnplge gpssnvvtfs tesadprvse pismgkdaiw
     1441 teipfnsdty seckgkqyvk rtwykkfvgv qlcnslryki ylsdsltgkf ynigdqrghg
     1501 edhcqfvdsf ldgrtgqqed lpvkdgffra vrqepvkfgk iggethinyv rwyecgtsip
     1561 gkw
//
LOCUS       XP_053912989            1559 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X34 [Cuculus canorus].
ACCESSION   XP_053912989
VERSION     XP_053912989.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057014.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1559
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1559
                     /product="target of Nesh-SH3 isoform X34"
                     /calculated_mol_wt=172231
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <735..1327
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <811..1074
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     Region          1325..1417
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1406..1407,1409..1410)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1559
                     /gene="ABI3BP"
                     /coded_by="XM_054057014.1:103..4782"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt
      601 faipempstk sategpglkf tshtstetrr smiafdenqh ipstsetsni kemlsavpvt
      661 qrselestsl hlanqetvea sqrpdlests stllettrtv katrrprlks ttpsslatqq
      721 tvmvtssadl eisipplsrt pyvltttial sgvqpvlssp vtpskpettd tgpatsesil
      781 esftpktsrp fqwprvtlap keiplipskv kpsattevql vkpapksphl epktshtvek
      841 pkstlapkea kstpsaskpr prartkkprt kpaatipvsv ttrspytyeh pktaevlepi
      901 tarveqprst iapketqrfh skpktspkph ipqakdvles itlrtdqlkp tivpketqrv
      961 pskhriplss evpqtkpvle sitfrtekpr steapketrr gpskpktsps phvpstrasl
     1021 kesrrvpskp raspspdvpy tkpapketll ipskpktsve pevpqakpap kathlgsinl
     1081 itvhvvdgsk mtlvpnetyq isskpkiaqa teipwfhtap hktrltsarp kpsdksqmrp
     1141 alskttvapa rtiapglpkw ivptdevytp edvdrqidad vkkpfeysht wekpfsvttp
     1201 pgprhppipp vkptqmrrkp lppntvtgkp gipakptgpt spvrtrtsyk tptafatpey
     1261 yvdatvfsss ptsetdssgk pryqaphvmy mkkdedvpcs itsslehfpq eevgtkeept
     1321 rppqnpptnl tvvtvegcpt fvildwekpe ndtvteyevv stengasdge keksiittnq
     1381 thstvenlkp dtsyefhvkp rnplgegpss nvvtfstesa dprvsepism gkdaiwteip
     1441 fnsdtyseck gkqyvkrtwy kkfvgvqlcn slrykiylsd sltgkfynig dqrghgedhc
     1501 qfvdsfldgr tgqqedlpvk dgffravrqe pvkfgkigge thinyvrwye cgtsipgkw
//
LOCUS       XP_053912990            1534 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X35 [Cuculus canorus].
ACCESSION   XP_053912990
VERSION     XP_053912990.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057015.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1534
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1534
                     /product="target of Nesh-SH3 isoform X35"
                     /calculated_mol_wt=169646
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <735..1302
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1300..1392
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1381..1382,1384..1385)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1534
                     /gene="ABI3BP"
                     /coded_by="XM_054057015.1:103..4707"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt
      601 faipempstk sategpglkf tshtstetrr smiafdenqh ipstsetsni kemlsavpvt
      661 qrselestsl hlanqetvea sqrpdlests stllettrtv katrrprlks ttpsslatqq
      721 tvmvtssadl eisipplsrt pyvltttial sgvqpvlssp vtpskpettd tgpatsesil
      781 esftpktsrp fqwprvtlap keiplipskv kpsattevql vkpapksphl epktshtvek
      841 pkstlapkea kstpsaskpr prartkkprt kpaatipvsv ttrspytyeh pktaevlepi
      901 tarveqprst iapketqrfh skpktspkph ipqakdvles itlrtdqlkp tivpketqrv
      961 pskhriplss evpqtkpvle sitfrtekpr steapketrr gpskpktsps phvpstrasl
     1021 kesrrvpskp raspspdvpy tkpapketll ipskpktsve pevpqakpvp netyqisskp
     1081 kiaqateipw fhtaphktrl tsarpkpsdk sqmrpalskt tvapartiap glpkwivptd
     1141 evytpedvdr qidadvkkpf eyshtwekpf svttppgprh ppippvkptq mrrkplppnt
     1201 vtgkpgipak ptgptspvrt rtsyktptaf atpeyyvdat vfsssptset dssgkpryqa
     1261 phvmymkkde dvpcsitssl ehfpqeevgt keeptrppqn pptnltvvtv egcptfvild
     1321 wekpendtvt eyevvsteng asdgekeksi ittnqthstv enlkpdtsye fhvkprnplg
     1381 egpssnvvtf stesadprvs epismgkdai wteipfnsdt yseckgkqyv krtwykkfvg
     1441 vqlcnslryk iylsdsltgk fynigdqrgh gedhcqfvds fldgrtgqqe dlpvkdgffr
     1501 avrqepvkfg kiggethiny vrwyecgtsi pgkw
//
LOCUS       XP_053912991            1513 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X36 [Cuculus canorus].
ACCESSION   XP_053912991
VERSION     XP_053912991.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057016.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1513
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1513
                     /product="target of Nesh-SH3 isoform X36"
                     /calculated_mol_wt=167518
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <314..697
                     /region_name="PRK12323"
                     /note="DNA polymerase III subunit gamma/tau; cl46901"
                     /db_xref="CDD:481241"
     Region          <632..1114
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1279..1371
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1360..1361,1363..1364)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1513
                     /gene="ABI3BP"
                     /coded_by="XM_054057016.1:103..4644"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelalsg vqpvlsspvt
      601 pskpettdtg patsesiles ftpktsrpfq wprvtlapke iplipskvkp sattevqlvk
      661 papksphlep ktshtvekpk stlapkeaks tpsaskprpr artkkprtkp aatipvsvtt
      721 rspytyehpk taevlepita rveqprstia pketqrfhsk pktspkphip qakdvlesit
      781 lrtdqlkpti vpketqrvps khriplssev pqtkpvlesi tfrtekprst eapketrrgp
      841 skpktspsph vpstraslke srrvpskpra spspdvpytk pvltpttfrv eqpktatapk
      901 epqhtpfkpk taptpdaphs kpeiiptfhe pdttmiphip ertkatlapt ekqfihtksk
      961 psekprvlht kpaihqttpq piitkssttt ehsratmapk etllipskpk tsvepevpqa
     1021 kpapkathlg sinlitvhvv dgskmtlvpn etyqisskpk iaqateipwf htaphktrlt
     1081 sarpkpsdks qmrpalsktt vapartiapg lpkwivptde vytpedvdrq idadvkkpfe
     1141 yshtwekpfs vttppgprhp pippvkptqm rrkplppntv tgkpgipakp tgptspvrtr
     1201 tsyktptafa tpeyyvdatv fsssptsetd ssgkpryqap hvmymkkded vpcsitssle
     1261 hfpqeevgtk eeptrppqnp ptnltvvtve gcptfvildw ekpendtvte yevvstenga
     1321 sdgekeksii ttnqthstve nlkpdtsyef hvkprnplge gpssnvvtfs tesadprvse
     1381 pismgkdaiw teipfnsdty seckgkqyvk rtwykkfvgv qlcnslryki ylsdsltgkf
     1441 ynigdqrghg edhcqfvdsf ldgrtgqqed lpvkdgffra vrqepvkfgk iggethinyv
     1501 rwyecgtsip gkw
//
LOCUS       XP_053912992            1513 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X37 [Cuculus canorus].
ACCESSION   XP_053912992
VERSION     XP_053912992.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057017.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1513
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1513
                     /product="target of Nesh-SH3 isoform X37"
                     /calculated_mol_wt=167725
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <573..1114
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1279..1371
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1360..1361,1363..1364)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1513
                     /gene="ABI3BP"
                     /coded_by="XM_054057017.1:103..4644"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telashdfts tlqtstsakm seqetvtfqa pfkpvtsdns
      421 eaelasdetq pfssrsttfa ipempstksa tegpglkfts htstetrrsm iafdenqhip
      481 stsetsnike mlsavpvtqr selestslhl anqetveasq rpdlestsst llettrtvka
      541 trrprlkstt psslatqqtv mvtssadlei sipplsrtpy vltttialsg vqpvlsspvt
      601 pskpettdtg patsesiles ftpktsrpfq wprvtlapke iplipskvkp sattevqlvk
      661 papksphlep ktshtvekpk stlapkeaks tpsaskprpr artkkprtkp aatipvsvtt
      721 rspytyehpk taevlepita rveqprstia pketqrfhsk pktspkphip qakdvlesit
      781 lrtdqlkpti vpketqrvps khriplssev pqtkpvlesi tfrtekprst eapketrrgp
      841 skpktspsph vpstraslke srrvpskpra spspdvpytk pvltpttfrv eqpktatapk
      901 epqhtpfkpk taptpdaphs kpeiiptfhe pdttmiphip ertkatlapt ekqfihtksk
      961 psekprvlht kpaihqttpq piitkssttt ehsratmapk etllipskpk tsvepevpqa
     1021 kpapkathlg sinlitvhvv dgskmtlvpn etyqisskpk iaqateipwf htaphktrlt
     1081 sarpkpsdks qmrpalsktt vapartiapg lpkwivptde vytpedvdrq idadvkkpfe
     1141 yshtwekpfs vttppgprhp pippvkptqm rrkplppntv tgkpgipakp tgptspvrtr
     1201 tsyktptafa tpeyyvdatv fsssptsetd ssgkpryqap hvmymkkded vpcsitssle
     1261 hfpqeevgtk eeptrppqnp ptnltvvtve gcptfvildw ekpendtvte yevvstenga
     1321 sdgekeksii ttnqthstve nlkpdtsyef hvkprnplge gpssnvvtfs tesadprvse
     1381 pismgkdaiw teipfnsdty seckgkqyvk rtwykkfvgv qlcnslryki ylsdsltgkf
     1441 ynigdqrghg edhcqfvdsf ldgrtgqqed lpvkdgffra vrqepvkfgk iggethinyv
     1501 rwyecgtsip gkw
//
LOCUS       XP_053912993            1513 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X38 [Cuculus canorus].
ACCESSION   XP_053912993
VERSION     XP_053912993.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057018.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1513
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1513
                     /product="target of Nesh-SH3 isoform X38"
                     /calculated_mol_wt=167411
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          499..>720
                     /region_name="PRK10118"
                     /note="flagellar hook length control protein FliK"
                     /db_xref="CDD:236652"
     Region          <658..1114
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1279..1371
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1360..1361,1363..1364)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1513
                     /gene="ABI3BP"
                     /coded_by="XM_054057018.1:103..4644"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt
      601 faipempstk sategpglkf tshtstetrr smiafdenqh ipstsetsni kemlsavpal
      661 sgvqpvlssp vtpskpettd tgpapkeaks tpsaskprpr artkkprtkp aatipvsvtt
      721 rspytyehpk taevlepita rveqprstia pketqrfhsk pktspkphip qakdvlesit
      781 lrtdqlkpti vpketqrvps khriplssev pqtkpvlesi tfrtekprst eapketrrgp
      841 skpktspsph vpstraslke srrvpskpra spspdvpytk pvltpttfrv eqpktatapk
      901 epqhtpfkpk taptpdaphs kpeiiptfhe pdttmiphip ertkatlapt ekqfihtksk
      961 psekprvlht kpaihqttpq piitkssttt ehsratmapk etllipskpk tsvepevpqa
     1021 kpapkathlg sinlitvhvv dgskmtlvpn etyqisskpk iaqateipwf htaphktrlt
     1081 sarpkpsdks qmrpalsktt vapartiapg lpkwivptde vytpedvdrq idadvkkpfe
     1141 yshtwekpfs vttppgprhp pippvkptqm rrkplppntv tgkpgipakp tgptspvrtr
     1201 tsyktptafa tpeyyvdatv fsssptsetd ssgkpryqap hvmymkkded vpcsitssle
     1261 hfpqeevgtk eeptrppqnp ptnltvvtve gcptfvildw ekpendtvte yevvstenga
     1321 sdgekeksii ttnqthstve nlkpdtsyef hvkprnplge gpssnvvtfs tesadprvse
     1381 pismgkdaiw teipfnsdty seckgkqyvk rtwykkfvgv qlcnslryki ylsdsltgkf
     1441 ynigdqrghg edhcqfvdsf ldgrtgqqed lpvkdgffra vrqepvkfgk iggethinyv
     1501 rwyecgtsip gkw
//
LOCUS       XP_053912995            1446 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X39 [Cuculus canorus].
ACCESSION   XP_053912995
VERSION     XP_053912995.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057020.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1446
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1446
                     /product="target of Nesh-SH3 isoform X39"
                     /calculated_mol_wt=160240
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          445..>851
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     Region          <681..1214
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1212..1304
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1293..1294,1296..1297)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1446
                     /gene="ABI3BP"
                     /coded_by="XM_054057020.1:103..4443"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telatqspgl kslpsaetre memaseetql vssgsktsgt
      421 tevqptssas ydfhyvtstp qtftaseisd tagdtaewei smpisttepq lletmldlde
      481 kkplssrstt lsmpemppts aatqrpdles tlsaslettr tvkatrrprl ksttpaslat
      541 qqtimashdf tstlqtstsa kmseqetvtf qapfkpvtsd nseaelasde tqpfssrstt
      601 faipempstk sategpglkf tshtstetrr smiafdenqh ipstsetsni kemlsavpvt
      661 qrselestsl hlanqetvea sqrpdlests stllettrtv katrrprlks ttpsslatqq
      721 tvmvpketqr vpskhripls sevpqtkpvl esitfrtekp rsteapketr rgpskpktsp
      781 sphvpstras lkesrrvpsk praspspdvp ytkpvltptt frveqpktat apkepqhtpf
      841 kpktaptpda phskpeiipt fhepdttmip hipertkatl aptekqfiht kskpsekprv
      901 lhtkpaihqt tpqpiitkss tttehsratm apketllips kpktsvepev pqakpapkat
      961 hlgsinlitv hvvdgskmtl vpnetyqiss kpkiaqatei pwfhtaphkt rltsarpkps
     1021 dksqmrpals kttvaparti apglpkwivp tdevytpedv drqidadvkk pfeyshtwek
     1081 pfsvttppgp rhppippvkp tqmrrkplpp ntvtgkpgip akptgptspv rtrtsyktpt
     1141 afatpeyyvd atvfssspts etdssgkpry qaphvmymkk dedvpcsits slehfpqeev
     1201 gtkeeptrpp qnpptnltvv tvegcptfvi ldwekpendt vteyevvste ngasdgekek
     1261 siittnqths tvenlkpdts yefhvkprnp lgegpssnvv tfstesadpr vsepismgkd
     1321 aiwteipfns dtyseckgkq yvkrtwykkf vgvqlcnslr ykiylsdslt gkfynigdqr
     1381 ghgedhcqfv dsfldgrtgq qedlpvkdgf fravrqepvk fgkiggethi nyvrwyecgt
     1441 sipgkw
//
LOCUS       XP_053912996            1400 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X40 [Cuculus canorus].
ACCESSION   XP_053912996
VERSION     XP_053912996.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057021.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1400
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1400
                     /product="target of Nesh-SH3 isoform X40"
                     /calculated_mol_wt=155491
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <460..1001
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1166..1258
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1247..1248,1250..1251)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1400
                     /gene="ABI3BP"
                     /coded_by="XM_054057021.1:103..4305"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilas
      361 neiepvpsgf risdvpkrpl telvtqrsel estslhlanq etveasqrpd lestsstlle
      421 ttrtvkatrr prlksttpss latqqtvmvt ssadleisip plsrtpyvlt ttialsgvqp
      481 vlsspvtpsk pettdtgpat sesilesftp ktsrpfqwpr vtlapkeipl ipskvkpsat
      541 tevqlvkpap ksphlepkts htvekpkstl apkeakstps askprprart kkprtkpaat
      601 ipvsvttrsp ytyehpktae vlepitarve qprstiapke tqrfhskpkt spkphipqak
      661 dvlesitlrt dqlkptivpk etqrvpskhr iplssevpqt kpvlesitfr tekprsteap
      721 ketrrgpskp ktspsphvps traslkesrr vpskprasps pdvpytkpvl tpttfrveqp
      781 ktatapkepq htpfkpktap tpdaphskpe iiptfhepdt tmiphipert katlaptekq
      841 fihtkskpse kprvlhtkpa ihqttpqpii tksstttehs ratmapketl lipskpktsv
      901 epevpqakpa pkathlgsin litvhvvdgs kmtlvpnety qisskpkiaq ateipwfhta
      961 phktrltsar pkpsdksqmr palskttvap artiapglpk wivptdevyt pedvdrqida
     1021 dvkkpfeysh twekpfsvtt ppgprhppip pvkptqmrrk plppntvtgk pgipakptgp
     1081 tspvrtrtsy ktptafatpe yyvdatvfss sptsetdssg kpryqaphvm ymkkdedvpc
     1141 sitsslehfp qeevgtkeep trppqnpptn ltvvtvegcp tfvildwekp endtvteyev
     1201 vstengasdg ekeksiittn qthstvenlk pdtsyefhvk prnplgegps snvvtfstes
     1261 adprvsepis mgkdaiwtei pfnsdtysec kgkqyvkrtw ykkfvgvqlc nslrykiyls
     1321 dsltgkfyni gdqrghgedh cqfvdsfldg rtgqqedlpv kdgffravrq epvkfgkigg
     1381 ethinyvrwy ecgtsipgkw
//
LOCUS       XP_053912997            1375 aa            linear   VRT 09-MAR-2023
DEFINITION  target of Nesh-SH3 isoform X41 [Cuculus canorus].
ACCESSION   XP_053912997
VERSION     XP_053912997.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057022.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1375
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1375
                     /product="target of Nesh-SH3 isoform X41"
                     /calculated_mol_wt=152757
     Region          116..211
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(200..201,203..204)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          <435..976
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          1141..1233
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1222..1223,1225..1226)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1375
                     /gene="ABI3BP"
                     /coded_by="XM_054057022.1:103..4230"
                     /db_xref="GeneID:104055828"
ORIGIN      
        1 mmsrlvfllf cgyialklgn aqklprvkrq slkvqinatd dticmrylrp sqntklegfv
       61 lgygssffsn qyiplpsegk tsiteidaep rylvsvrpar vsnnkkscsg rnktqkplql
      121 vvgtltptsv flswgilvnp qhdwtstsnc asdrfytvry rekgkdkkwv fqlcpvtetv
      181 vdnlkpntly efgvkdnldd siwsktfnhk tvlsnkkvng qlqnmyklvp naqtqltlrd
      241 nkklvpvtii kqviqnrtqs ktsdssslpg ailvhlivpg lnetqqklpp lltidnipqa
      301 srkklaknet qvwpaesktp evqeispqsl paqaekkhgs qefkstpkpe lvqtqnilvt
      361 qrselestsl hlanqetvea sqrpdlests stllettrtv katrrprlks ttpsslatqq
      421 tvmvtssadl eisipplsrt pyvltttial sgvqpvlssp vtpskpettd tgpatsesil
      481 esftpktsrp fqwprvtlap keiplipskv kpsattevql vkpapksphl epktshtvek
      541 pkstlapkea kstpsaskpr prartkkprt kpaatipvsv ttrspytyeh pktaevlepi
      601 tarveqprst iapketqrfh skpktspkph ipqakdvles itlrtdqlkp tivpketqrv
      661 pskhriplss evpqtkpvle sitfrtekpr steapketrr gpskpktsps phvpstrasl
      721 kesrrvpskp raspspdvpy tkpvltpttf rveqpktata pkepqhtpfk pktaptpdap
      781 hskpeiiptf hepdttmiph ipertkatla ptekqfihtk skpsekprvl htkpaihqtt
      841 pqpiitksst ttehsratma pketllipsk pktsvepevp qakpapkath lgsinlitvh
      901 vvdgskmtlv pnetyqissk pkiaqateip wfhtaphktr ltsarpkpsd ksqmrpalsk
      961 ttvapartia pglpkwivpt devytpedvd rqidadvkkp feyshtwekp fsvttppgpr
     1021 hppippvkpt qmrrkplppn tvtgkpgipa kptgptspvr trtsyktpta fatpeyyvda
     1081 tvfsssptse tdssgkpryq aphvmymkkd edvpcsitss lehfpqeevg tkeeptrppq
     1141 npptnltvvt vegcptfvil dwekpendtv teyevvsten gasdgekeks iittnqthst
     1201 venlkpdtsy efhvkprnpl gegpssnvvt fstesadprv sepismgkda iwteipfnsd
     1261 tyseckgkqy vkrtwykkfv gvqlcnslry kiylsdsltg kfynigdqrg hgedhcqfvd
     1321 sfldgrtgqq edlpvkdgff ravrqepvkf gkiggethin yvrwyecgts ipgkw
//
LOCUS       XP_053912998             395 aa            linear   VRT 09-MAR-2023
DEFINITION  protein TFG isoform X1 [Cuculus canorus].
ACCESSION   XP_053912998
VERSION     XP_053912998.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057023.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..395
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..395
                     /product="protein TFG isoform X1"
                     /calculated_mol_wt=42501
     Region          11..91
                     /region_name="PB1_TFG"
                     /note="The PB1 domain found in TFG protein, an oncogenic
                     gene product and fusion partner to nerve growth factor
                     tyrosine kinase receptor TrkA and to the tyrosine kinase
                     ALK. The PB1 domain is a modular domain mediating specific
                     protein-protein interaction in...; cd06401"
                     /db_xref="CDD:99722"
     Region          <125..374
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <322..>395
                     /region_name="PRK13335"
                     /note="superantigen-like protein SSL3; Reviewed"
                     /db_xref="CDD:139494"
     CDS             1..395
                     /gene="TFG"
                     /coded_by="XM_054057023.1:319..1506"
                     /db_xref="GeneID:104055771"
ORIGIN      
        1 mngqldlsgk liikaqlged irripihned itydelvlmm qrvfrgklls ndevtikykd
       61 edgdlitifd ssdlsfaiqc srilkltlfv ngqprplesn qvkylrreli elrnkvnrll
      121 dcleppaepg lstnlpesda vdgreekpaa adsnvkpstq viaasmsafd plknqdeisk
      181 nvmsafgltd dqvsgppsap aeersgtpds iassssaahp pgvqaqqspy pgtqpqtgqv
      241 egqmyqqyqq pgypaqqpqa qpqqqygmqy pagysqqqqa psqqaqqfpa ysqpaapapa
      301 aafpgqpqql pagqppqypa gsyppqpytt qasqpapysg ppgsqaapga yqprpgftpp
      361 pgstmtpgps tpnpyarnrp pfgsqgytqp gpgyr
//
LOCUS       XP_053912999             394 aa            linear   VRT 09-MAR-2023
DEFINITION  protein TFG isoform X2 [Cuculus canorus].
ACCESSION   XP_053912999
VERSION     XP_053912999.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057024.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..394
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..394
                     /product="protein TFG isoform X2"
                     /calculated_mol_wt=42430
     Region          11..91
                     /region_name="PB1_TFG"
                     /note="The PB1 domain found in TFG protein, an oncogenic
                     gene product and fusion partner to nerve growth factor
                     tyrosine kinase receptor TrkA and to the tyrosine kinase
                     ALK. The PB1 domain is a modular domain mediating specific
                     protein-protein interaction in...; cd06401"
                     /db_xref="CDD:99722"
     Region          <169..>380
                     /region_name="PRK10263"
                     /note="DNA translocase FtsK; Provisional"
                     /db_xref="CDD:236669"
     Region          <321..>394
                     /region_name="PRK13335"
                     /note="superantigen-like protein SSL3; Reviewed"
                     /db_xref="CDD:139494"
     CDS             1..394
                     /gene="TFG"
                     /coded_by="XM_054057024.1:320..1504"
                     /db_xref="GeneID:104055771"
ORIGIN      
        1 mngqldlsgk liikaqlged irripihned itydelvlmm qrvfrgklls ndevtikykd
       61 edgdlitifd ssdlsfaiqc srilkltlfv ngqprplesn qvkylrreli elrnkvnrll
      121 dcleppaepg lstnlpesda vdgreekpaa adsnvkpstq viaasmsafd plknqdeisk
      181 nvmsafgltd dqvsgppsap aeersgtpds iassssaahp pgvqaqqspy pgtqpqtgqv
      241 egqmyqqyqq pgypaqqpqa qpqqqygmqy pgysqqqqap sqqaqqfpay sqpaapapaa
      301 afpgqpqqlp agqppqypag syppqpyttq asqpapysgp pgsqaapgay qprpgftppp
      361 gstmtpgpst pnpyarnrpp fgsqgytqpg pgyr
//
LOCUS       XP_009554955             217 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC104055532 isoform X1 [Cuculus canorus].
ACCESSION   XP_009554955
VERSION     XP_009554955.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009556660.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..217
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..217
                     /product="uncharacterized protein LOC104055532 isoform X1"
                     /calculated_mol_wt=22869
     Region          <185..212
                     /region_name="TNFRSF"
                     /note="Tumor necrosis factor receptor superfamily
                     (TNFRSF); cl22855"
                     /db_xref="CDD:473981"
     CDS             1..217
                     /gene="LOC104055532"
                     /coded_by="XM_009556660.2:144..797"
                     /db_xref="GeneID:104055532"
ORIGIN      
        1 mreqgsrsls tmslsgkada assclfpecf dtltrscidc selfkdntte pnrvaptsal
       61 vptlytvdlp rtllifgvli vvgiilvlgf lacrvgkqrr kskveeeeae anvdtscplp
      121 spgcqdsavl egdaalasas clhlngglkm pgppgkagak rsvccqgdyd gdiillstvy
      181 prhedhnhsf plpatelgat alvttkttqn caaeera
//
LOCUS       XP_053913000             216 aa            linear   VRT 09-MAR-2023
DEFINITION  tumor necrosis factor receptor superfamily member 13C isoform X2
            [Cuculus canorus].
ACCESSION   XP_053913000
VERSION     XP_053913000.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057025.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..216
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..216
                     /product="tumor necrosis factor receptor superfamily
                     member 13C isoform X2"
                     /calculated_mol_wt=22767
     Region          21..211
                     /region_name="TNFRSF"
                     /note="Tumor necrosis factor receptor superfamily
                     (TNFRSF); cl22855"
                     /db_xref="CDD:473981"
     Region          40..156
                     /region_name="CRD2"
                     /note="CRD2 [structural motif]"
                     /db_xref="CDD:276900"
     CDS             1..216
                     /gene="LOC104055532"
                     /coded_by="XM_054057025.1:155..805"
                     /db_xref="GeneID:104055532"
ORIGIN      
        1 mreqgsrsls tmslsgkada assclfpecf dtltrscidc selfkdntkp nrvaptsalv
       61 ptlytvdlpr tllifgvliv vgiilvlgfl acrvgkqrrk skveeeeaea nvdtscplps
      121 pgcqdsavle gdaalasasc lhlngglkmp gppgkagakr svccqgdydg diillstvyp
      181 rhedhnhsfp lpatelgata lvttkttqnc aaeera
//
LOCUS       XP_053913001             179 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC104055532 isoform X3 [Cuculus canorus].
ACCESSION   XP_053913001
VERSION     XP_053913001.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057026.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..179
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..179
                     /product="uncharacterized protein LOC104055532 isoform X3"
                     /calculated_mol_wt=18663
     Region          <147..174
                     /region_name="TNFRSF"
                     /note="Tumor necrosis factor receptor superfamily
                     (TNFRSF); cl22855"
                     /db_xref="CDD:473981"
     CDS             1..179
                     /gene="LOC104055532"
                     /coded_by="XM_054057026.1:256..795"
                     /db_xref="GeneID:104055532"
ORIGIN      
        1 mgragcphlp pepnrvapts alvptlytvd lprtllifgv livvgiilvl gflacrvgkq
       61 rrkskveeee aeanvdtscp lpspgcqdsa vlegdaalas asclhlnggl kmpgppgkag
      121 akrsvccqgd ydgdiillst vyprhedhnh sfplpatelg atalvttktt qncaaeera
//
LOCUS       XP_053913003             924 aa            linear   VRT 09-MAR-2023
DEFINITION  centrosomal protein of 126 kDa [Cuculus canorus].
ACCESSION   XP_053913003
VERSION     XP_053913003.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057028.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..924
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..924
                     /product="centrosomal protein of 126 kDa"
                     /calculated_mol_wt=101908
     Region          3..871
                     /region_name="K1377"
                     /note="Susceptibility to monomelic amyotrophy; pfam15352"
                     /db_xref="CDD:464666"
     CDS             1..924
                     /gene="CEP126"
                     /coded_by="XM_054057028.1:283..3057"
                     /db_xref="GeneID:104055041"
ORIGIN      
        1 mtqeavrtnv dskqlfqknl kemqqllekh hlskmenfhq evkktddses lssldsleae
       61 eqngncttls esslttqcdc alygpeksqt tnngllytaq itssknmhln nclrnvdspn
      121 nnlpihdlla khnvltpaeh vnnseeessa scrsgknpae fstsseqess vskafgflqn
      181 ikerskpssg lastlatghp vfnlskawas pdsvpggrvh hlvqdqsfqm tpqkrtlsvq
      241 nssqpiatst ilfpnqgcst gipstadtfp kdknistefs kntagkmtet keenikyidd
      301 inpgsslfqg ipnasvlcnv kqlnnreeek gnkvetvsll sdteinsgsp aqyktlknni
      361 herkrarlft silkkgskye pshfnnvvmn hgisfgtrpv ssirdsvelv kmkkksaene
      421 kynrklrwcd qinqiiienn nkcyekntse issaqlqyvq ttnsapknnl sivaqpsnpm
      481 fiknhqenap iskpnvktke sneectsqni fkstgsfstk kawmvsqdde skpsicssns
      541 kinevkarrt rrpisvraqp sfmpekrtgt mfrlqsatea dktlkaprkl laphpppapl
      601 lgnrsgenta spwcqpllps shqttsrndf ndrhvlladq vlnrngtens vrisfssela
      661 tgvptpgccl akckplaknt csansirtsa cqdcpvtcte rrpantengl hlypipaavk
      721 trtswlgvht arapkdsatg tvpvtrqkqd fdssenkcis ehrrqtvask swkpthhahl
      781 spvqsafdqi qnknntyksa evsestaqfl laeklasmpv aedeilaame svqpasqpll
      841 pnrapclgmt alsieeqkil qsldhlnqrl qnvreaitrn psaskvlqii spssiqqyia
      901 splvnttias qqyqnasasn rlql
//
LOCUS       XP_053913004             269 aa            linear   VRT 09-MAR-2023
DEFINITION  cilia- and flagella-associated protein 300 [Cuculus canorus].
ACCESSION   XP_053913004
VERSION     XP_053913004.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057029.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..269
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..269
                     /product="cilia- and flagella-associated protein 300"
                     /calculated_mol_wt=30710
     Region          14..258
                     /region_name="CFAP300"
                     /note="Cilia- and flagella-associated protein 300;
                     pfam14926"
                     /db_xref="CDD:464382"
     CDS             1..269
                     /gene="CFAP300"
                     /coded_by="XM_054057029.1:1..810"
                     /db_xref="GeneID:104055052"
ORIGIN      
        1 msagprrgga afafrplpqr afaflqdrdi ahrllkwsmk gritaqafsf dqqfkpyqkd
       61 efvmaffedq nvnsslklls asgqwttlgs kvtkieatev pctqismsff drlytegvvr
      121 etgdivkcyd dyhddilisd elrkvllled sdhydifsql drkeflfclf khlciggtlc
      181 qfedvvgpyl ettkalykdl vsvqknpetk eihiistvfr vsaydnnglc ypsskshdqt
      241 faylvvdpck rhvhtlyhcf ggslftdql
//
LOCUS       XP_009564835            1094 aa            linear   VRT 09-MAR-2023
DEFINITION  SUMO-specific isopeptidase USPL1 isoform X1 [Cuculus canorus].
ACCESSION   XP_009564835
VERSION     XP_009564835.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566540.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564835.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1094
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1094
                     /product="SUMO-specific isopeptidase USPL1 isoform X1"
                     /calculated_mol_wt=122854
     Region          232..496
                     /region_name="Peptidase_C98"
                     /note="Ubiquitin-specific peptidase-like, SUMO
                     isopeptidase; pfam15499"
                     /db_xref="CDD:464750"
     Region          567..1092
                     /region_name="DUF4650"
                     /note="Domain of unknown function (DUF4650); pfam15509"
                     /db_xref="CDD:464755"
     CDS             1..1094
                     /gene="USPL1"
                     /coded_by="XM_009566540.2:6353..9637"
                     /db_xref="GeneID:104064237"
ORIGIN      
        1 mvdtrkttng lqvigegtgv gkstlhmvgy lgkncnpver taceycpvck ekgqiqvlrt
       61 yrinfqesif lcenpqciyp lgfkplnsii tstdsenhqv psthqkrksc disdcspves
      121 hkkkarinnv vnvehtiktd pvvkcyqngl sipkssvfdm lqndeqkpfn nvescmqkvd
      181 cetatntkny qettpkisrp rtkllpnsef cstsseillk ddksstnntd lwlqwrnmhn
      241 lcwldcilsa lvhletlkva laeeyndgkc llqnlltkyn qatallntck rsevkdvlpk
      301 vesslneirn smftqlqpql kcelgkkdsp vfalplllkl dqqaeklflh sfswkfecvc
      361 cgykyqdrfr ktlttftnii pdwhplnavh vgpcnncsdr aqrrhmvlek vpsifmlhfv
      421 eglphnnlkn ysfqfeesty eitsivqyqt dkkhfitwsl npdgtwlecd dlkgpyckrh
      481 erfevppsqi hiviwekkts haeelnsqfq skntedllln kvqsnstvlh cdfdntvgri
      541 paehqkedsv rtpdkkrqqv aeeesvvhhg venlahddlv almleeievd segkslpngq
      601 vvednlslem gtpqlqesaf spntpytgef tgtslamngk ctlyenssic lpleelnpan
      661 itspvpkshd pdssdsllap rmddrtnvhn rehvlnselq lnkklspiqn iiqkspdlkd
      721 askivvnsqv pnsaaannsf qpsrkdqkrg fvgswvkkll sknssfmpss asalknersc
      781 rtpsmqkise vrlpvkgpsn fdgfqskatn ktteppksvv pqsnnthsvs nfkgfsqsir
      841 lpaashitte gpswnksgtt sgkmtqfrfp scnsgksees dsdktkklrl kllkklnakk
      901 kklasldrla veqikhekrv skdvstpsqt eshndsellq sflrelqhqi dvadnesefn
      961 vnsvpgctsh sngdeilael lsptstvasl eapksedecm ymemvdssva vtasdekthv
     1021 pqaavtcedh syyspvkdsn selhtiskpi vkklafespt redlledlfs isapssmagd
     1081 idlphfdetl feaw
//
LOCUS       XP_053913005            1094 aa            linear   VRT 09-MAR-2023
DEFINITION  SUMO-specific isopeptidase USPL1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053913005
VERSION     XP_053913005.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057030.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1094
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1094
                     /product="SUMO-specific isopeptidase USPL1 isoform X1"
                     /calculated_mol_wt=122854
     Region          232..496
                     /region_name="Peptidase_C98"
                     /note="Ubiquitin-specific peptidase-like, SUMO
                     isopeptidase; pfam15499"
                     /db_xref="CDD:464750"
     Region          567..1092
                     /region_name="DUF4650"
                     /note="Domain of unknown function (DUF4650); pfam15509"
                     /db_xref="CDD:464755"
     CDS             1..1094
                     /gene="USPL1"
                     /coded_by="XM_054057030.1:84..3368"
                     /db_xref="GeneID:104064237"
ORIGIN      
        1 mvdtrkttng lqvigegtgv gkstlhmvgy lgkncnpver taceycpvck ekgqiqvlrt
       61 yrinfqesif lcenpqciyp lgfkplnsii tstdsenhqv psthqkrksc disdcspves
      121 hkkkarinnv vnvehtiktd pvvkcyqngl sipkssvfdm lqndeqkpfn nvescmqkvd
      181 cetatntkny qettpkisrp rtkllpnsef cstsseillk ddksstnntd lwlqwrnmhn
      241 lcwldcilsa lvhletlkva laeeyndgkc llqnlltkyn qatallntck rsevkdvlpk
      301 vesslneirn smftqlqpql kcelgkkdsp vfalplllkl dqqaeklflh sfswkfecvc
      361 cgykyqdrfr ktlttftnii pdwhplnavh vgpcnncsdr aqrrhmvlek vpsifmlhfv
      421 eglphnnlkn ysfqfeesty eitsivqyqt dkkhfitwsl npdgtwlecd dlkgpyckrh
      481 erfevppsqi hiviwekkts haeelnsqfq skntedllln kvqsnstvlh cdfdntvgri
      541 paehqkedsv rtpdkkrqqv aeeesvvhhg venlahddlv almleeievd segkslpngq
      601 vvednlslem gtpqlqesaf spntpytgef tgtslamngk ctlyenssic lpleelnpan
      661 itspvpkshd pdssdsllap rmddrtnvhn rehvlnselq lnkklspiqn iiqkspdlkd
      721 askivvnsqv pnsaaannsf qpsrkdqkrg fvgswvkkll sknssfmpss asalknersc
      781 rtpsmqkise vrlpvkgpsn fdgfqskatn ktteppksvv pqsnnthsvs nfkgfsqsir
      841 lpaashitte gpswnksgtt sgkmtqfrfp scnsgksees dsdktkklrl kllkklnakk
      901 kklasldrla veqikhekrv skdvstpsqt eshndsellq sflrelqhqi dvadnesefn
      961 vnsvpgctsh sngdeilael lsptstvasl eapksedecm ymemvdssva vtasdekthv
     1021 pqaavtcedh syyspvkdsn selhtiskpi vkklafespt redlledlfs isapssmagd
     1081 idlphfdetl feaw
//
LOCUS       XP_053913006            1094 aa            linear   VRT 09-MAR-2023
DEFINITION  SUMO-specific isopeptidase USPL1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053913006
VERSION     XP_053913006.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057031.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1094
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1094
                     /product="SUMO-specific isopeptidase USPL1 isoform X1"
                     /calculated_mol_wt=122854
     Region          232..496
                     /region_name="Peptidase_C98"
                     /note="Ubiquitin-specific peptidase-like, SUMO
                     isopeptidase; pfam15499"
                     /db_xref="CDD:464750"
     Region          567..1092
                     /region_name="DUF4650"
                     /note="Domain of unknown function (DUF4650); pfam15509"
                     /db_xref="CDD:464755"
     CDS             1..1094
                     /gene="USPL1"
                     /coded_by="XM_054057031.1:285..3569"
                     /db_xref="GeneID:104064237"
ORIGIN      
        1 mvdtrkttng lqvigegtgv gkstlhmvgy lgkncnpver taceycpvck ekgqiqvlrt
       61 yrinfqesif lcenpqciyp lgfkplnsii tstdsenhqv psthqkrksc disdcspves
      121 hkkkarinnv vnvehtiktd pvvkcyqngl sipkssvfdm lqndeqkpfn nvescmqkvd
      181 cetatntkny qettpkisrp rtkllpnsef cstsseillk ddksstnntd lwlqwrnmhn
      241 lcwldcilsa lvhletlkva laeeyndgkc llqnlltkyn qatallntck rsevkdvlpk
      301 vesslneirn smftqlqpql kcelgkkdsp vfalplllkl dqqaeklflh sfswkfecvc
      361 cgykyqdrfr ktlttftnii pdwhplnavh vgpcnncsdr aqrrhmvlek vpsifmlhfv
      421 eglphnnlkn ysfqfeesty eitsivqyqt dkkhfitwsl npdgtwlecd dlkgpyckrh
      481 erfevppsqi hiviwekkts haeelnsqfq skntedllln kvqsnstvlh cdfdntvgri
      541 paehqkedsv rtpdkkrqqv aeeesvvhhg venlahddlv almleeievd segkslpngq
      601 vvednlslem gtpqlqesaf spntpytgef tgtslamngk ctlyenssic lpleelnpan
      661 itspvpkshd pdssdsllap rmddrtnvhn rehvlnselq lnkklspiqn iiqkspdlkd
      721 askivvnsqv pnsaaannsf qpsrkdqkrg fvgswvkkll sknssfmpss asalknersc
      781 rtpsmqkise vrlpvkgpsn fdgfqskatn ktteppksvv pqsnnthsvs nfkgfsqsir
      841 lpaashitte gpswnksgtt sgkmtqfrfp scnsgksees dsdktkklrl kllkklnakk
      901 kklasldrla veqikhekrv skdvstpsqt eshndsellq sflrelqhqi dvadnesefn
      961 vnsvpgctsh sngdeilael lsptstvasl eapksedecm ymemvdssva vtasdekthv
     1021 pqaavtcedh syyspvkdsn selhtiskpi vkklafespt redlledlfs isapssmagd
     1081 idlphfdetl feaw
//
LOCUS       XP_053913007            1094 aa            linear   VRT 09-MAR-2023
DEFINITION  SUMO-specific isopeptidase USPL1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053913007
VERSION     XP_053913007.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057032.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1094
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1094
                     /product="SUMO-specific isopeptidase USPL1 isoform X1"
                     /calculated_mol_wt=122854
     Region          232..496
                     /region_name="Peptidase_C98"
                     /note="Ubiquitin-specific peptidase-like, SUMO
                     isopeptidase; pfam15499"
                     /db_xref="CDD:464750"
     Region          567..1092
                     /region_name="DUF4650"
                     /note="Domain of unknown function (DUF4650); pfam15509"
                     /db_xref="CDD:464755"
     CDS             1..1094
                     /gene="USPL1"
                     /coded_by="XM_054057032.1:86..3370"
                     /db_xref="GeneID:104064237"
ORIGIN      
        1 mvdtrkttng lqvigegtgv gkstlhmvgy lgkncnpver taceycpvck ekgqiqvlrt
       61 yrinfqesif lcenpqciyp lgfkplnsii tstdsenhqv psthqkrksc disdcspves
      121 hkkkarinnv vnvehtiktd pvvkcyqngl sipkssvfdm lqndeqkpfn nvescmqkvd
      181 cetatntkny qettpkisrp rtkllpnsef cstsseillk ddksstnntd lwlqwrnmhn
      241 lcwldcilsa lvhletlkva laeeyndgkc llqnlltkyn qatallntck rsevkdvlpk
      301 vesslneirn smftqlqpql kcelgkkdsp vfalplllkl dqqaeklflh sfswkfecvc
      361 cgykyqdrfr ktlttftnii pdwhplnavh vgpcnncsdr aqrrhmvlek vpsifmlhfv
      421 eglphnnlkn ysfqfeesty eitsivqyqt dkkhfitwsl npdgtwlecd dlkgpyckrh
      481 erfevppsqi hiviwekkts haeelnsqfq skntedllln kvqsnstvlh cdfdntvgri
      541 paehqkedsv rtpdkkrqqv aeeesvvhhg venlahddlv almleeievd segkslpngq
      601 vvednlslem gtpqlqesaf spntpytgef tgtslamngk ctlyenssic lpleelnpan
      661 itspvpkshd pdssdsllap rmddrtnvhn rehvlnselq lnkklspiqn iiqkspdlkd
      721 askivvnsqv pnsaaannsf qpsrkdqkrg fvgswvkkll sknssfmpss asalknersc
      781 rtpsmqkise vrlpvkgpsn fdgfqskatn ktteppksvv pqsnnthsvs nfkgfsqsir
      841 lpaashitte gpswnksgtt sgkmtqfrfp scnsgksees dsdktkklrl kllkklnakk
      901 kklasldrla veqikhekrv skdvstpsqt eshndsellq sflrelqhqi dvadnesefn
      961 vnsvpgctsh sngdeilael lsptstvasl eapksedecm ymemvdssva vtasdekthv
     1021 pqaavtcedh syyspvkdsn selhtiskpi vkklafespt redlledlfs isapssmagd
     1081 idlphfdetl feaw
//
LOCUS       XP_053913008            1083 aa            linear   VRT 09-MAR-2023
DEFINITION  SUMO-specific isopeptidase USPL1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053913008
VERSION     XP_053913008.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057033.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1083
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1083
                     /product="SUMO-specific isopeptidase USPL1 isoform X2"
                     /calculated_mol_wt=121489
     Region          232..496
                     /region_name="Peptidase_C98"
                     /note="Ubiquitin-specific peptidase-like, SUMO
                     isopeptidase; pfam15499"
                     /db_xref="CDD:464750"
     Region          567..1079
                     /region_name="DUF4650"
                     /note="Domain of unknown function (DUF4650); pfam15509"
                     /db_xref="CDD:464755"
     CDS             1..1083
                     /gene="USPL1"
                     /coded_by="XM_054057033.1:6353..9604"
                     /db_xref="GeneID:104064237"
ORIGIN      
        1 mvdtrkttng lqvigegtgv gkstlhmvgy lgkncnpver taceycpvck ekgqiqvlrt
       61 yrinfqesif lcenpqciyp lgfkplnsii tstdsenhqv psthqkrksc disdcspves
      121 hkkkarinnv vnvehtiktd pvvkcyqngl sipkssvfdm lqndeqkpfn nvescmqkvd
      181 cetatntkny qettpkisrp rtkllpnsef cstsseillk ddksstnntd lwlqwrnmhn
      241 lcwldcilsa lvhletlkva laeeyndgkc llqnlltkyn qatallntck rsevkdvlpk
      301 vesslneirn smftqlqpql kcelgkkdsp vfalplllkl dqqaeklflh sfswkfecvc
      361 cgykyqdrfr ktlttftnii pdwhplnavh vgpcnncsdr aqrrhmvlek vpsifmlhfv
      421 eglphnnlkn ysfqfeesty eitsivqyqt dkkhfitwsl npdgtwlecd dlkgpyckrh
      481 erfevppsqi hiviwekkts haeelnsqfq skntedllln kvqsnstvlh cdfdntvgri
      541 paehqkedsv rtpdkkrqqv aeeesvvhhg venlahddlv almleeievd segkslpngq
      601 vvednlslem gtpqlqesaf spntpytgef tgtslamngk ctlyenssic lpleelnpan
      661 itspvpkshd pdssdsllap rmddrtnvhn rehvlnselq lnkklspiqn iiqkspdlkd
      721 askivvnsqv pnsaaannsf qpsrkdqkrg fvgswvkkll sknssfmpss asalknersc
      781 rtpsmqkise vrlpvkgpsn fdgfqskatn ktteppksvv pqsnnthsvs nfkgfsqsir
      841 lpaashitte gpswnksgtt sgkmtqfrfp scnsgksees dsdktkklrl kllkklnakk
      901 kklasldrla veqikhekrv skdvstpsqt eshndsellq sflrelqhqi dvadnesefn
      961 vnsvpgctsh sngdeilael lsptstvasl eapksedecm ymemvdssva vtasdekthv
     1021 pqaavtcedh syyspvkdsn selhtiskpi vkklafespt redlledlfs isapssmagv
     1081 lhd
//
LOCUS       XP_053913009             935 aa            linear   VRT 09-MAR-2023
DEFINITION  SUMO-specific isopeptidase USPL1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053913009
VERSION     XP_053913009.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057034.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..935
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..935
                     /product="SUMO-specific isopeptidase USPL1 isoform X3"
                     /calculated_mol_wt=105140
     Region          73..337
                     /region_name="Peptidase_C98"
                     /note="Ubiquitin-specific peptidase-like, SUMO
                     isopeptidase; pfam15499"
                     /db_xref="CDD:464750"
     Region          408..933
                     /region_name="DUF4650"
                     /note="Domain of unknown function (DUF4650); pfam15509"
                     /db_xref="CDD:464755"
     CDS             1..935
                     /gene="USPL1"
                     /coded_by="XM_054057034.1:503..3310"
                     /db_xref="GeneID:104064237"
ORIGIN      
        1 mlqndeqkpf nnvescmqkv dcetatntkn yqettpkisr prtkllpnse fcstsseill
       61 kddksstnnt dlwlqwrnmh nlcwldcils alvhletlkv alaeeyndgk cllqnlltky
      121 nqatallntc krsevkdvlp kvesslneir nsmftqlqpq lkcelgkkds pvfalplllk
      181 ldqqaeklfl hsfswkfecv ccgykyqdrf rktlttftni ipdwhplnav hvgpcnncsd
      241 raqrrhmvle kvpsifmlhf veglphnnlk nysfqfeest yeitsivqyq tdkkhfitws
      301 lnpdgtwlec ddlkgpyckr herfevppsq ihiviwekkt shaeelnsqf qskntedlll
      361 nkvqsnstvl hcdfdntvgr ipaehqkeds vrtpdkkrqq vaeeesvvhh gvenlahddl
      421 valmleeiev dsegkslpng qvvednlsle mgtpqlqesa fspntpytge ftgtslamng
      481 kctlyenssi clpleelnpa nitspvpksh dpdssdslla prmddrtnvh nrehvlnsel
      541 qlnkklspiq niiqkspdlk daskivvnsq vpnsaaanns fqpsrkdqkr gfvgswvkkl
      601 lsknssfmps sasalkners crtpsmqkis evrlpvkgps nfdgfqskat nktteppksv
      661 vpqsnnthsv snfkgfsqsi rlpaashitt egpswnksgt tsgkmtqfrf pscnsgksee
      721 sdsdktkklr lkllkklnak kkklasldrl aveqikhekr vskdvstpsq teshndsell
      781 qsflrelqhq idvadnesef nvnsvpgcts hsngdeilae llsptstvas leapksedec
      841 mymemvdssv avtasdekth vpqaavtced hsyyspvkds nselhtiskp ivkklafesp
      901 tredlledlf sisapssmag didlphfdet lfeaw
//
LOCUS       XP_053913011             467 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-1,3-mannosyl-glycoprotein
            4-beta-N-acetylglucosaminyltransferase C isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053913011
VERSION     XP_053913011.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057036.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..467
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..467
                     /product="alpha-1,3-mannosyl-glycoprotein
                     4-beta-N-acetylglucosaminyltransferase C isoform X1"
                     /calculated_mol_wt=54089
     Region          48..314
                     /region_name="Glyco_transf_54"
                     /note="N-Acetylglucosaminyltransferase-IV (GnT-IV)
                     conserved region; pfam04666"
                     /db_xref="CDD:461384"
     CDS             1..467
                     /gene="MGAT4C"
                     /coded_by="XM_054057036.1:511..1914"
                     /db_xref="GeneID:104056177"
ORIGIN      
        1 mrclrkrsaa sflgvlvicl lfmnlyieds yvlegdkqli retathqlnp eryvhtfkdl
       61 snfsgsinis yrylagtpls rkryltigls svkrkkgnyl letiksifeq ssyeelkeia
      121 vvvqladfds swcegmvqdi sqkfahhiia grlivihvpe eyypvldglk rnyndpedrv
      181 kfrskqnvdy afllnfcanl sdyyvmledd vrcsknflta vkkvitsreg sywvtlefsk
      241 lgyigklyhs hdlprlahfl lmfyqempcd wllihfrgll aqkevirfkp slfqhmgyys
      301 sykgaenklk dddfeeesfd ipdnppanlh tnmnvfenye askaysside yfwgkapstg
      361 dfygivfekp ikitkikvvt gtedrqndil hhgalevgek ivgskkgrqc ttylrlgefk
      421 ngnfeitdve nkvlfdincm rilvtksqke wliirsisiw tsqtpnq
//
LOCUS       XP_053913012             467 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-1,3-mannosyl-glycoprotein
            4-beta-N-acetylglucosaminyltransferase C isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053913012
VERSION     XP_053913012.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057037.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..467
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..467
                     /product="alpha-1,3-mannosyl-glycoprotein
                     4-beta-N-acetylglucosaminyltransferase C isoform X1"
                     /calculated_mol_wt=54089
     Region          48..314
                     /region_name="Glyco_transf_54"
                     /note="N-Acetylglucosaminyltransferase-IV (GnT-IV)
                     conserved region; pfam04666"
                     /db_xref="CDD:461384"
     CDS             1..467
                     /gene="MGAT4C"
                     /coded_by="XM_054057037.1:665..2068"
                     /db_xref="GeneID:104056177"
ORIGIN      
        1 mrclrkrsaa sflgvlvicl lfmnlyieds yvlegdkqli retathqlnp eryvhtfkdl
       61 snfsgsinis yrylagtpls rkryltigls svkrkkgnyl letiksifeq ssyeelkeia
      121 vvvqladfds swcegmvqdi sqkfahhiia grlivihvpe eyypvldglk rnyndpedrv
      181 kfrskqnvdy afllnfcanl sdyyvmledd vrcsknflta vkkvitsreg sywvtlefsk
      241 lgyigklyhs hdlprlahfl lmfyqempcd wllihfrgll aqkevirfkp slfqhmgyys
      301 sykgaenklk dddfeeesfd ipdnppanlh tnmnvfenye askaysside yfwgkapstg
      361 dfygivfekp ikitkikvvt gtedrqndil hhgalevgek ivgskkgrqc ttylrlgefk
      421 ngnfeitdve nkvlfdincm rilvtksqke wliirsisiw tsqtpnq
//
LOCUS       XP_053913013             467 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-1,3-mannosyl-glycoprotein
            4-beta-N-acetylglucosaminyltransferase C isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053913013
VERSION     XP_053913013.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057038.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..467
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..467
                     /product="alpha-1,3-mannosyl-glycoprotein
                     4-beta-N-acetylglucosaminyltransferase C isoform X1"
                     /calculated_mol_wt=54089
     Region          48..314
                     /region_name="Glyco_transf_54"
                     /note="N-Acetylglucosaminyltransferase-IV (GnT-IV)
                     conserved region; pfam04666"
                     /db_xref="CDD:461384"
     CDS             1..467
                     /gene="MGAT4C"
                     /coded_by="XM_054057038.1:572..1975"
                     /db_xref="GeneID:104056177"
ORIGIN      
        1 mrclrkrsaa sflgvlvicl lfmnlyieds yvlegdkqli retathqlnp eryvhtfkdl
       61 snfsgsinis yrylagtpls rkryltigls svkrkkgnyl letiksifeq ssyeelkeia
      121 vvvqladfds swcegmvqdi sqkfahhiia grlivihvpe eyypvldglk rnyndpedrv
      181 kfrskqnvdy afllnfcanl sdyyvmledd vrcsknflta vkkvitsreg sywvtlefsk
      241 lgyigklyhs hdlprlahfl lmfyqempcd wllihfrgll aqkevirfkp slfqhmgyys
      301 sykgaenklk dddfeeesfd ipdnppanlh tnmnvfenye askaysside yfwgkapstg
      361 dfygivfekp ikitkikvvt gtedrqndil hhgalevgek ivgskkgrqc ttylrlgefk
      421 ngnfeitdve nkvlfdincm rilvtksqke wliirsisiw tsqtpnq
//
LOCUS       XP_053913014             465 aa            linear   VRT 09-MAR-2023
DEFINITION  alpha-1,3-mannosyl-glycoprotein
            4-beta-N-acetylglucosaminyltransferase C isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053913014
VERSION     XP_053913014.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057039.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..465
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..465
                     /product="alpha-1,3-mannosyl-glycoprotein
                     4-beta-N-acetylglucosaminyltransferase C isoform X2"
                     /calculated_mol_wt=53944
     Region          46..312
                     /region_name="Glyco_transf_54"
                     /note="N-Acetylglucosaminyltransferase-IV (GnT-IV)
                     conserved region; pfam04666"
                     /db_xref="CDD:461384"
     CDS             1..465
                     /gene="MGAT4C"
                     /coded_by="XM_054057039.1:14..1411"
                     /db_xref="GeneID:104056177"
ORIGIN      
        1 mdrallmkpl lplcdftmaq easwkkrqen kegdkqlire tathqlnper yvhtfkdlsn
       61 fsgsinisyr ylagtplsrk ryltiglssv krkkgnylle tiksifeqss yeelkeiavv
      121 vqladfdssw cegmvqdisq kfahhiiagr livihvpeey ypvldglkrn yndpedrvkf
      181 rskqnvdyaf llnfcanlsd yyvmleddvr csknfltavk kvitsregsy wvtlefsklg
      241 yigklyhshd lprlahfllm fyqempcdwl lihfrgllaq kevirfkpsl fqhmgyyssy
      301 kgaenklkdd dfeeesfdip dnppanlhtn mnvfenyeas kayssideyf wgkapstgdf
      361 ygivfekpik itkikvvtgt edrqndilhh galevgekiv gskkgrqctt ylrlgefkng
      421 nfeitdvenk vlfdincmri lvtksqkewl iirsisiwts qtpnq
//
LOCUS       XP_053913016            1358 aa            linear   VRT 09-MAR-2023
DEFINITION  von Willebrand factor A domain-containing protein 3B [Cuculus
            canorus].
ACCESSION   XP_053913016
VERSION     XP_053913016.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057041.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1358
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1358
                     /product="von Willebrand factor A domain-containing
                     protein 3B"
                     /calculated_mol_wt=154349
     Region          529..680
                     /region_name="vWFA"
                     /note="Von Willebrand factor type A (vWA) domain was
                     originally found in the blood coagulation protein von
                     Willebrand factor (vWF). Typically, the vWA domain is made
                     up of approximately 200 amino acid residues folded into a
                     classic a/b para-rossmann type of...; cd00198"
                     /db_xref="CDD:238119"
     Site            order(535,605,628)
                     /site_type="other"
                     /note="metal ion-dependent adhesion site (MIDAS)"
                     /db_xref="CDD:238119"
     Region          1065..1190
                     /region_name="DUF4537"
                     /note="Domain of unknown function (DUF4537); pfam15057"
                     /db_xref="CDD:464475"
     CDS             1..1358
                     /gene="VWA3B"
                     /coded_by="XM_054057041.1:97..4173"
                     /db_xref="GeneID:104056707"
ORIGIN      
        1 magspsrilv wsdyafdskh rqdpedphea pkknskeker rlpvtqwdmd vqlltssskw
       61 lqiyglkrnk lslshilsqi gfqhrkdyvt tlgklvasry adglfpqykr aqdgsvynlt
      121 akkelilhfv dclmgaiely kqrmewltse srqifgviqe rcivivldfg taaqtefdlc
      181 rhalsmvlve qvtqiakfnl iraalnlmkw qqqstpvsqh tvksavmwlw kldlmtaash
      241 tssaeallea msdeaveavy yfavgdipvd tkqlllekvs dgpcpvntvs fnaredetiv
      301 flkelshlas grfhafaekn dcrdatgpal kceedgksli alnsrkvkgr iplvagvred
      361 vflmwkelee arstvreaqk ilaesdwpas rdatkadhll qkhtsdkyms sekwlqkygl
      421 kaqkltlyda ladctfrhad gvvdiktkpe dessqtdaet krkvihakyc dkfvhtfwkd
      481 gsivhvyvst ekykkykekm rttlrqvegr mkwlqqgsrg lfgdvleddi yilidisqsm
      541 kdklplvkkk ifqliqeqlr ykkrfnfvkf taravawrek laevneenlq dawlwikrle
      601 vgsstntlka lqialsdtdt qaiylltdgr pdqppqlila evqlhrkipi htvsfncddi
      661 eankflyels tetegqfhyy diyltdpdaa efavsediql lkreierger dlekmktfhd
      721 rclikdlyng endpenkstn hkqthavssv tehveelnia assrpccase dpaltlhhqt
      781 wqttpdspaq rkkvlyaeqt ktsllrilsh smksreesle egippekksv svkksmkhtt
      841 iskdlkmqks vektskssld vssalwleth glvarrltim dalaptavph stkyipvldk
      901 hvfskvfdem lplahvgsdk kqitlinpqa vnldaykekl eqaiksyerr lnlvvwrals
      961 qderdkfked gpvqymqhke alleslenlg wpiscedvil ledeiatals yiqqasdlqe
     1021 aikketekss escisnnkkr aeeetvksks kkrqkgqvfv thksqkviar sdvtgfyypg
     1081 tviknisstr alvgfsnget civpvkfaip vggavpcpyl qvgdyvfart gtqtgkeyya
     1141 paiviatskr vemggklytv lmfnnrkehc vrtglikisq akyafscqyi kmvqmvdyvt
     1201 ldrkttkayl qspvedkgge eakesivked rgkkkkkkae dkshprervs dsddllsvsr
     1261 gkvkhrgsns lpsdeeefea ssfsvssswr slrrrslelp rapthcsakh scclhgpave
     1321 qdpepgkssv trttrvnidq qglsrqpqhh caeqrkpc
//
LOCUS       XP_053913017            1138 aa            linear   VRT 09-MAR-2023
DEFINITION  protocadherin-8 isoform X1 [Cuculus canorus].
ACCESSION   XP_053913017
VERSION     XP_053913017.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057042.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1138
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1138
                     /product="protocadherin-8 isoform X1"
                     /calculated_mol_wt=122876
     Region          <5..144
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          160..239
                     /region_name="Cadherin_2"
                     /note="Cadherin-like; pfam08266"
                     /db_xref="CDD:462413"
     Region          269..370
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(276..277,333,335,366,368..369)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          378..478
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(385..386,441,443,474,476..477)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          496..591
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(501..502,554,556,587,589..590)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          600..701
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(606..607,664,666,697,699..700)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          716..806
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     CDS             1..1138
                     /gene="PCDH8"
                     /coded_by="XM_054057042.1:16..3432"
                     /db_xref="GeneID:104056524"
ORIGIN      
        1 mkavwrrgga qtavegarsc vpstahrspp pripgtghhr plrpehrasp pasrapriap
       61 cipgtahrpl hpgyrasppa srapritpci pgtehrscaq stahhllhpg yrasppasrv
      121 pripgtahhr pvglspapga mtpsqllafa cllslsqgkt vryrtdeega pgtvigtlad
      181 empvkapgem sfrlmrqfsn sslvrvreed gqlsigeagl dreqlcgqap qcvlafdvvs
      241 cwreryrlvh velevrdind naprfpraqm tlevsesaap gtrlplevav dedvgsnsiq
      301 sfqvslnshf gveaqtradg arcadlvllq eldrerqpsy tlelvakdgg sparsgtatv
      361 hvrvldandn spafaqgsvt velpedappg sllldldaad pdegpngevv yafgsqvppe
      421 arrlfrldpr sgrltleaav dyertrtyel dvraqdrgas prtatctviv rltdvndnap
      481 risisalrga asatsvayis eaaasesfva lvsasdrdsg angqvrcslr ghdhfalqra
      541 yedsymivtt aaldreripe ynltvvaedl gsppfktvrq ytvrvsdend naplftkply
      601 evavpennpp gayittvvar dpdlghngkv tyrlletqvm gapistyvsv dpatgaiyal
      661 rtfnyeilkq ldlriqatdg gspqlssstl vkvrmvdqnd nppviihpvl tngtveisvs
      721 sktscdslva qikardaddg anaeltfafl eepqqdlfti npssgdivlr gdlseelgql
      781 fkviltvtdn grpplattat vnflvtatap ssiqetakps swegkalqwd ipliviivla
      841 gsctlllvai itiattcnrr kkgndiktnt slkeqidish lekgqqeegs qrgnvfevrt
      901 fpsktsftsp dpsptaeeis ttesssdstc lyegqkklrg psgeqgfaat psygkesapp
      961 vtiwkghsfn tisgreaekf sgkdsgkgds dfndsdsdis gdalkkdlit hmqnglwact
     1021 aeckilghsd rcwspscgra nphpsphpsa plstfcksts lprdplrrdn fyqaqlpktv
     1081 glqsvyekvl hrdfdrtitl lspprparlp dlqeigvply papstrflgp qtdtaekv
//
LOCUS       XP_053913018            1137 aa            linear   VRT 09-MAR-2023
DEFINITION  protocadherin-8 isoform X2 [Cuculus canorus].
ACCESSION   XP_053913018
VERSION     XP_053913018.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057043.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1137
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1137
                     /product="protocadherin-8 isoform X2"
                     /calculated_mol_wt=122748
     Region          <5..144
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          160..239
                     /region_name="Cadherin_2"
                     /note="Cadherin-like; pfam08266"
                     /db_xref="CDD:462413"
     Region          269..370
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(276..277,333,335,366,368..369)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          378..478
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(385..386,441,443,474,476..477)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          496..591
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(501..502,554,556,587,589..590)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          600..701
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(606..607,664,666,697,699..700)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          716..806
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     CDS             1..1137
                     /gene="PCDH8"
                     /coded_by="XM_054057043.1:16..3429"
                     /db_xref="GeneID:104056524"
ORIGIN      
        1 mkavwrrgga qtavegarsc vpstahrspp pripgtghhr plrpehrasp pasrapriap
       61 cipgtahrpl hpgyrasppa srapritpci pgtehrscaq stahhllhpg yrasppasrv
      121 pripgtahhr pvglspapga mtpsqllafa cllslsqgkt vryrtdeega pgtvigtlad
      181 empvkapgem sfrlmrqfsn sslvrvreed gqlsigeagl dreqlcgqap qcvlafdvvs
      241 cwreryrlvh velevrdind naprfpraqm tlevsesaap gtrlplevav dedvgsnsiq
      301 sfqvslnshf gveaqtradg arcadlvllq eldrerqpsy tlelvakdgg sparsgtatv
      361 hvrvldandn spafaqgsvt velpedappg sllldldaad pdegpngevv yafgsqvppe
      421 arrlfrldpr sgrltleaav dyertrtyel dvraqdrgas prtatctviv rltdvndnap
      481 risisalrga asatsvayis eaaasesfva lvsasdrdsg angqvrcslr ghdhfalqra
      541 yedsymivtt aaldreripe ynltvvaedl gsppfktvrq ytvrvsdend naplftkply
      601 evavpennpp gayittvvar dpdlghngkv tyrlletqvm gapistyvsv dpatgaiyal
      661 rtfnyeilkq ldlriqatdg gspqlssstl vkvrmvdqnd nppviihpvl tngtveisvs
      721 sktscdslva qikardaddg anaeltfafl eepqqdlfti npssgdivlr gdlseelgql
      781 fkviltvtdn grpplattat vnflvtatap ssiqetakps swegkalqwd ipliviivla
      841 gsctlllvai itiattcnrr kkgndiktnt slkeqidish lekgqqeegs qrgnvfevrt
      901 fpsktsftsp dpsptaeeis ttesssdstc lyegqkklrg psgegfaatp sygkesappv
      961 tiwkghsfnt isgreaekfs gkdsgkgdsd fndsdsdisg dalkkdlith mqnglwacta
     1021 eckilghsdr cwspscgran phpsphpsap lstfckstsl prdplrrdnf yqaqlpktvg
     1081 lqsvyekvlh rdfdrtitll spprparlpd lqeigvplyp apstrflgpq tdtaekv
//
LOCUS       XP_053913019             171 aa            linear   VRT 09-MAR-2023
DEFINITION  stefin-C-like isoform X1 [Cuculus canorus].
ACCESSION   XP_053913019
VERSION     XP_053913019.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057044.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..171
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..171
                     /product="stefin-C-like isoform X1"
                     /calculated_mol_wt=19080
     Region          78..>138
                     /region_name="CY"
                     /note="Cystatin-like domain; Cystatins are a family of
                     cysteine protease inhibitors that occur mainly as single
                     domain proteins. However some extracellular proteins such
                     as kininogen, His-rich glycoprotein and fetuin also
                     contain these domains; cl09238"
                     /db_xref="CDD:447698"
     Site            order(120..122,124)
                     /site_type="active"
                     /note="putative proteinase inhibition site [active]"
                     /db_xref="CDD:238002"
     CDS             1..171
                     /gene="LOC128851008"
                     /coded_by="XM_054057044.1:267..782"
                     /db_xref="GeneID:128851008"
ORIGIN      
        1 mtacfllifk sewcwemlga tlirflstet gssrykscdp mppayipgaw clcsdctegp
       61 ssetpltaet lpatimsgqf sdpmtptpei qeianrvksq lekevgraft ifnavlyryq
      121 ksvgtsylik vevadgdfnh llvfqppldr kvgpelvryw tgktrhdple c
//
LOCUS       XP_053913020              99 aa            linear   VRT 09-MAR-2023
DEFINITION  cystatin-B-like isoform X2 [Cuculus canorus].
ACCESSION   XP_053913020
VERSION     XP_053913020.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057045.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..99
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..99
                     /product="cystatin-B-like isoform X2"
                     /calculated_mol_wt=11316
     CDS             1..99
                     /gene="LOC128851008"
                     /coded_by="XM_054057045.1:48..347"
                     /db_xref="GeneID:128851008"
ORIGIN      
        1 mpretpepeg rpegeqkksk syvhvksqle kevgraftif navlyryqks vgtsylikve
       61 vadgdfnhll vfqppldrkv gpelvrywtg ktrhdplec
//
LOCUS       XP_053913022             140 aa            linear   VRT 09-MAR-2023
DEFINITION  helix-loop-helix protein 2 [Cuculus canorus].
ACCESSION   XP_053913022
VERSION     XP_053913022.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057047.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..140
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..140
                     /product="helix-loop-helix protein 2"
                     /calculated_mol_wt=14853
     Region          68..140
                     /region_name="bHLH_TS_HEN2"
                     /note="basic helix-loop-helix (bHLH) domain found in
                     helix-loop-helix protein 2 (HEN-2) and similar proteins;
                     cd19702"
                     /db_xref="CDD:381545"
     Site            order(84,88,90..92,94,99,117..120)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381545"
     Site            order(97..98,101..102,104..105,121,124,128,130..131,135,
                     137..138)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381545"
     CDS             1..140
                     /gene="NHLH2"
                     /coded_by="XM_054057047.1:906..1328"
                     /db_xref="GeneID:128851010"
ORIGIN      
        1 mmlspdqaad sdhpssapsd peslggadaq alsccasdpe paeggggagr gggesraggr
       61 pglhpaplsr eekrrrrrat akyrsahatr erirveafnl afaelrkllp tlppdkklsk
      121 ieilrlaicy isylnhvldv
//
LOCUS       XP_009555587             726 aa            linear   VRT 09-MAR-2023
DEFINITION  ATP-binding cassette sub-family D member 2 [Cuculus canorus].
ACCESSION   XP_009555587
VERSION     XP_009555587.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557292.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009555587.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..726
                     /product="ATP-binding cassette sub-family D member 2"
                     /calculated_mol_wt=81701
     Region          67..674
                     /region_name="3a01203"
                     /note="Peroxysomal Fatty Acyl CoA Transporter (FAT) Family
                     protein; TIGR00954"
                     /db_xref="CDD:273360"
     CDS             1..726
                     /gene="ABCD2"
                     /coded_by="XM_009557292.2:302..2482"
                     /db_xref="GeneID:104056082"
ORIGIN      
        1 mtpmlraaar rvpwgragaa kraacllaaa yglrvlypil rrrggragaq ggsqdaeavr
       61 graapavnae ffkqllelrk lffpklvspe lgllclhsva lvsrtflsiy vaaldgkivk
      121 sivekqprsf vfklikwlmi aipatfvnst irylecklal afrtrlvdra yetyfanqty
      181 yrvismdgrl anpdqslted immfsqsvah lysnltkpil dvvltsytli rtarsrganp
      241 igptvlaglv vyatarvlka cspkfgklva eeaqkkgylr fmhsriianv eeiafyrghk
      301 vemkqlqksy kaladqmnli lskrlwyimi eqflmkyvws scgmimvavp iitatgfadg
      361 eledgqkqam vserteaftt srnllisgad aierimssyk evtelagyta rvynmfsvfd
      421 evrrgiykrt aviqgsenns knedkvelhi dgpleikgrv idvdhgiice nvpiitpngd
      481 vvvsrlnfkv qegmnllitg pngcgksslf rilsglwpvy egvlykpppq hmfyipqrpy
      541 msigtlrdqv iypdsvddmh ekgyqdqdle cilhmvhlyh ivqreggwda imdwkdvlsg
      601 gekqrmgmar mfyhkpkyal ldectsavsi dvegkifqaa kaagisllsi thrpslwkyh
      661 thllqfdgqg gwrfeqldta irlslseekq rlesqlagip kmqqrlnelc kilgedsvlk
      721 tmdked
//
LOCUS       XP_053913023             689 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein C12orf40 homolog isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053913023
VERSION     XP_053913023.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057048.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..689
                     /product="uncharacterized protein C12orf40 homolog isoform
                     X1"
                     /calculated_mol_wt=77120
     Region          234..652
                     /region_name="DUF4552"
                     /note="Domain of unknown function (DUF4552); pfam15089"
                     /db_xref="CDD:464495"
     CDS             1..689
                     /gene="C1H12orf40"
                     /coded_by="XM_054057048.1:1111..3180"
                     /db_xref="GeneID:104056083"
ORIGIN      
        1 mlkqerrkqk effekkklks kmkllgvssp ktsavsldll nlyvvnqist kkdtsektrk
       61 pvhvdiiedk kipiqrhnve lpmsplrtqh msnlediqnr lqkqvldsrr qhlsekvkyq
      121 hnlsqvtevt hpnssmehee niartfgacp lsssgfsssk ctqfseenfs tnvmgniwkq
      181 tygeklqnqp gnssdqdpwi tkppsqcifk ksdtvpqelf kplhrldyti sarknpmvmt
      241 sneseniegi neplfdilke aaelkapqdg sdrsflalfe degqpihnnp ytkqlypsin
      301 qsstaiffid pdntnqmtnr nyscdtavay saidaqkssa drhlkgifta pgqhlpksnv
      361 sfasykkisr lhkahledch egqhyfipfe nkekpgnfek ieafayhhdq rmnvketvqn
      421 ysrknsdses vkesawrqnq vfgfeeftta qekeykfgis snlhemekdv esaaspqsps
      481 ysprqtesyf ssspatseee dtdkkkeyvs eqslktddvn lvsasagtgp lktshtrtmp
      541 lqpnsiltrd vahiqeknsi lcaaeeenkn hptssegsss hqalkrehvt cstrhdvglq
      601 tessvtevrk mdvatqcgtm qacccgssll fahstempsl satgttgghk mpahealqpa
      661 gtgsaagtaa fssedeylsl agrtlevln
//
LOCUS       XP_053913024             607 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein C12orf40 homolog isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053913024
VERSION     XP_053913024.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057049.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..607
                     /product="uncharacterized protein C12orf40 homolog isoform
                     X2"
                     /calculated_mol_wt=67552
     Region          152..570
                     /region_name="DUF4552"
                     /note="Domain of unknown function (DUF4552); pfam15089"
                     /db_xref="CDD:464495"
     CDS             1..607
                     /gene="C1H12orf40"
                     /coded_by="XM_054057049.1:349..2172"
                     /db_xref="GeneID:104056083"
ORIGIN      
        1 msplrtqhms nlediqnrlq kqvldsrrqh lsekvkyqhn lsqvtevthp nssmeheeni
       61 artfgacpls ssgfssskct qfseenfstn vmgniwkqty geklqnqpgn ssdqdpwitk
      121 ppsqcifkks dtvpqelfkp lhrldytisa rknpmvmtsn eseniegine plfdilkeaa
      181 elkapqdgsd rsflalfede gqpihnnpyt kqlypsinqs staiffidpd ntnqmtnrny
      241 scdtavaysa idaqkssadr hlkgiftapg qhlpksnvsf asykkisrlh kahledcheg
      301 qhyfipfenk ekpgnfekie afayhhdqrm nvketvqnys rknsdsesvk esawrqnqvf
      361 gfeefttaqe keykfgissn lhemekdves aaspqspsys prqtesyfss spatseeedt
      421 dkkkeyvseq slktddvnlv sasagtgplk tshtrtmplq pnsiltrdva hiqeknsilc
      481 aaeeenknhp tssegssshq alkrehvtcs trhdvglqte ssvtevrkmd vatqcgtmqa
      541 cccgssllfa hstempslsa tgttgghkmp ahealqpagt gsaagtaafs sedeylslag
      601 rtlevln
//
LOCUS       XP_053913025             599 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein C12orf40 homolog isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053913025
VERSION     XP_053913025.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057050.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..599
                     /product="uncharacterized protein C12orf40 homolog isoform
                     X3"
                     /calculated_mol_wt=66556
     Region          144..562
                     /region_name="DUF4552"
                     /note="Domain of unknown function (DUF4552); pfam15089"
                     /db_xref="CDD:464495"
     CDS             1..599
                     /gene="C1H12orf40"
                     /coded_by="XM_054057050.1:405..2204"
                     /db_xref="GeneID:104056083"
ORIGIN      
        1 mggffvlftr lqkqvldsrr qhlsekvkyq hnlsqvtevt hpnssmehee niartfgacp
       61 lsssgfsssk ctqfseenfs tnvmgniwkq tygeklqnqp gnssdqdpwi tkppsqcifk
      121 ksdtvpqelf kplhrldyti sarknpmvmt sneseniegi neplfdilke aaelkapqdg
      181 sdrsflalfe degqpihnnp ytkqlypsin qsstaiffid pdntnqmtnr nyscdtavay
      241 saidaqkssa drhlkgifta pgqhlpksnv sfasykkisr lhkahledch egqhyfipfe
      301 nkekpgnfek ieafayhhdq rmnvketvqn ysrknsdses vkesawrqnq vfgfeeftta
      361 qekeykfgis snlhemekdv esaaspqsps ysprqtesyf ssspatseee dtdkkkeyvs
      421 eqslktddvn lvsasagtgp lktshtrtmp lqpnsiltrd vahiqeknsi lcaaeeenkn
      481 hptssegsss hqalkrehvt cstrhdvglq tessvtevrk mdvatqcgtm qacccgssll
      541 fahstempsl satgttgghk mpahealqpa gtgsaagtaa fssedeylsl agrtlevln
//
LOCUS       XP_053913026             664 aa            linear   VRT 09-MAR-2023
DEFINITION  proton myo-inositol cotransporter isoform X1 [Cuculus canorus].
ACCESSION   XP_053913026
VERSION     XP_053913026.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057051.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..664
                     /product="proton myo-inositol cotransporter isoform X1"
                     /calculated_mol_wt=71889
     Region          83..592
                     /region_name="MFS_HMIT_like"
                     /note="H(+)-myo-inositol cotransporter and similar
                     transporters of the Major Facilitator Superfamily;
                     cd17360"
                     /db_xref="CDD:340918"
     Site            order(91,95,209,212..213,216,332..333,337..338,341..342,
                     370,516..517,520..521,525,548..549,552)
                     /site_type="other"
                     /note="chemical substrate binding pocket [chemical
                     binding]"
                     /db_xref="CDD:340918"
     CDS             1..664
                     /gene="SLC2A13"
                     /coded_by="XM_054057051.1:67..2061"
                     /db_xref="GeneID:104056084"
ORIGIN      
        1 msrkasdnve ytlrslsnlm gekrrrqadg sagsgaager sliaaescss lnsaasggel
       61 eraarrqfqq detpgfvyvv svfsalggfl fgydtgvvsg allllkreln ldalwqellv
      121 sgtvgaaals alaggvlngl cgrrpcilla sglftagagv laaardketl lggrvvvglg
      181 igvasmtvpv yiaevapphl rgrlvtintl fitggqffas vvdgifsyla kdgwrymlgl
      241 savpaviqfl gflflpespr wliqkgqtqr arrilsqirg nqaideeyds iknnieeeek
      301 evgaagpvic rmltypptrr alivgcglqm fqqlsgintv myysatilqm sgveddrlai
      361 wlaaltafin fiftlmgvwl vermgrrklt lgsltgtava liilasgfll saqvspritl
      421 nppdpshqns tctkysycng cmldpdcglc yklnessvve sscipvdkds tmkaawgrcs
      481 netvfkkedl fwaynfcptp yswtallgli lylvffapgm gpmpwtvnse iyplwarstg
      541 nacssgvnwv fnvlvsltfl htaeyltyyg afflyagfaa lglvfiygcl petkgkklee
      601 ieslfesrlc tcgmadsdeg rqcwgflaad ghlplpalfh ghsqkwcsaa cctglifsye
      661 fdpt
//
LOCUS       XP_053913027             644 aa            linear   VRT 09-MAR-2023
DEFINITION  proton myo-inositol cotransporter isoform X2 [Cuculus canorus].
ACCESSION   XP_053913027
VERSION     XP_053913027.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057052.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..644
                     /product="proton myo-inositol cotransporter isoform X2"
                     /calculated_mol_wt=69850
     Region          83..592
                     /region_name="MFS_HMIT_like"
                     /note="H(+)-myo-inositol cotransporter and similar
                     transporters of the Major Facilitator Superfamily;
                     cd17360"
                     /db_xref="CDD:340918"
     Site            order(91,95,209,212..213,216,332..333,337..338,341..342,
                     370,516..517,520..521,525,548..549,552)
                     /site_type="other"
                     /note="chemical substrate binding pocket [chemical
                     binding]"
                     /db_xref="CDD:340918"
     CDS             1..644
                     /gene="SLC2A13"
                     /coded_by="XM_054057052.1:64..1998"
                     /db_xref="GeneID:104056084"
ORIGIN      
        1 msrkasdnve ytlrslsnlm gekrrrqadg sagsgaager sliaaescss lnsaasggel
       61 eraarrqfqq detpgfvyvv svfsalggfl fgydtgvvsg allllkreln ldalwqellv
      121 sgtvgaaals alaggvlngl cgrrpcilla sglftagagv laaardketl lggrvvvglg
      181 igvasmtvpv yiaevapphl rgrlvtintl fitggqffas vvdgifsyla kdgwrymlgl
      241 savpaviqfl gflflpespr wliqkgqtqr arrilsqirg nqaideeyds iknnieeeek
      301 evgaagpvic rmltypptrr alivgcglqm fqqlsgintv myysatilqm sgveddrlai
      361 wlaaltafin fiftlmgvwl vermgrrklt lgsltgtava liilasgfll saqvspritl
      421 nppdpshqns tctkysycng cmldpdcglc yklnessvve sscipvdkds tmkaawgrcs
      481 netvfkkedl fwaynfcptp yswtallgli lylvffapgm gpmpwtvnse iyplwarstg
      541 nacssgvnwv fnvlvsltfl htaeyltyyg afflyagfaa lglvfiygcl petkgkklee
      601 ieslfesrlc tcgmadsdeg ryieyirvkg snyhlsdnda sdve
//
LOCUS       XP_053913028             618 aa            linear   VRT 09-MAR-2023
DEFINITION  proton myo-inositol cotransporter isoform X3 [Cuculus canorus].
ACCESSION   XP_053913028
VERSION     XP_053913028.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057053.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..618
                     /product="proton myo-inositol cotransporter isoform X3"
                     /calculated_mol_wt=66752
     Region          83..592
                     /region_name="MFS_HMIT_like"
                     /note="H(+)-myo-inositol cotransporter and similar
                     transporters of the Major Facilitator Superfamily;
                     cd17360"
                     /db_xref="CDD:340918"
     Site            order(91,95,209,212..213,216,332..333,337..338,341..342,
                     370,516..517,520..521,525,548..549,552)
                     /site_type="other"
                     /note="chemical substrate binding pocket [chemical
                     binding]"
                     /db_xref="CDD:340918"
     CDS             1..618
                     /gene="SLC2A13"
                     /coded_by="XM_054057053.1:67..1923"
                     /db_xref="GeneID:104056084"
ORIGIN      
        1 msrkasdnve ytlrslsnlm gekrrrqadg sagsgaager sliaaescss lnsaasggel
       61 eraarrqfqq detpgfvyvv svfsalggfl fgydtgvvsg allllkreln ldalwqellv
      121 sgtvgaaals alaggvlngl cgrrpcilla sglftagagv laaardketl lggrvvvglg
      181 igvasmtvpv yiaevapphl rgrlvtintl fitggqffas vvdgifsyla kdgwrymlgl
      241 savpaviqfl gflflpespr wliqkgqtqr arrilsqirg nqaideeyds iknnieeeek
      301 evgaagpvic rmltypptrr alivgcglqm fqqlsgintv myysatilqm sgveddrlai
      361 wlaaltafin fiftlmgvwl vermgrrklt lgsltgtava liilasgfll saqvspritl
      421 nppdpshqns tctkysycng cmldpdcglc yklnessvve sscipvdkds tmkaawgrcs
      481 netvfkkedl fwaynfcptp yswtallgli lylvffapgm gpmpwtvnse iyplwarstg
      541 nacssgvnwv fnvlvsltfl htaeyltyyg afflyagfaa lglvfiygcl petkgkklee
      601 ieslfesrlc tcgsagaf
//
LOCUS       XP_009554240             392 aa            linear   VRT 09-MAR-2023
DEFINITION  G-protein coupled receptor 143 [Cuculus canorus].
ACCESSION   XP_009554240
VERSION     XP_009554240.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009555945.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..392
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..392
                     /product="G-protein coupled receptor 143"
                     /calculated_mol_wt=43818
     Region          1..375
                     /region_name="Ocular_alb"
                     /note="Ocular albinism type 1 protein; pfam02101"
                     /db_xref="CDD:460446"
     CDS             1..392
                     /gene="GPR143"
                     /coded_by="XM_009555945.2:144..1322"
                     /db_xref="GeneID:104054881"
ORIGIN      
        1 masprletyc cpnrdaatql vmnfqpevfs gvcigsasis lvltilqllp kkgqsarkvp
       61 kasssstill lisicdilga lgiifrssvw igfpgfiani svvnrtdmwp safcvgsamw
      121 iqllysagfw wlfcyavdsy lvvrrsagls tivlyhmmtw glavmlcveg iallyypsls
      181 scengvehai phyittyapl llvlvvnpil frrtvsavas llkgrqgiyt enerrlgtei
      241 qirffkimlv fiicwscnii nesllfylem qpdinemplk nirsaalitw iimgvlnpmq
      301 gflftlafyg wtgwrvdlkw rkreipwesl ssstagenty pspvnyqsni hdskkisttd
      361 sqqtdeaism lsegntsgdd rvtrsspiyq gw
//
LOCUS       XP_009556193             578 aa            linear   VRT 09-MAR-2023
DEFINITION  high affinity choline transporter 1 [Cuculus canorus].
ACCESSION   XP_009556193
VERSION     XP_009556193.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009557898.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..578
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..578
                     /product="high affinity choline transporter 1"
                     /calculated_mol_wt=62886
     Region          8..495
                     /region_name="SLC5sbd_CHT"
                     /note="Na(+)- and Cl(-)-dependent choline cotransporter
                     CHT and related proteins; solute-binding domain; cd11474"
                     /db_xref="CDD:271368"
     Site            order(60,63,343,346..347)
                     /site_type="other"
                     /note="Na binding site [ion binding]"
                     /db_xref="CDD:271368"
     CDS             1..578
                     /gene="SLC5A7"
                     /coded_by="XM_009557898.2:153..1889"
                     /db_xref="GeneID:104056630"
ORIGIN      
        1 mafhveglva iivfylaila vgiwaawktk ntgsegdrse aiivggrdig llvggftmta
       61 twvgggying taeavyvpgy glawaqapig yslslivggl ffakpmrskg yvtmldpfqq
      121 tygkrmggll fipalmgemf waaaifsalg atisviidvn vnisviisal iatmytlvgg
      181 lysvaytdvv qlfciflglw isvpfamshp avtdigltav hpvyqapwlg sinsvdiytw
      241 ldsfllltfg gipwqayfqr vlssssatya qflsilaafg cfvmalpail igaigastaw
      301 netaygfpdp mtkkeadmil pivlqylcpv yisffglgav saavmssads silsassmfa
      361 rniyqlsfrq nasdreivwv mritvflfga aatamallas svyglwylss dlvyiiifpq
      421 llcvlfikgt ntygaiagyl fglvlritgg epylylqpli yypgcypden niytqrfpfk
      481 tlamltsfft niivsylaky lfesgtlppk ldfldavvar ysrehmdkat lvksdnivln
      541 elapvnprhs ltlsstfvnk eafnyvdssp elsntedn
//
LOCUS       XP_053913030             578 aa            linear   VRT 09-MAR-2023
DEFINITION  high affinity choline transporter 1 [Cuculus canorus].
ACCESSION   XP_053913030
VERSION     XP_053913030.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057055.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..578
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..578
                     /product="high affinity choline transporter 1"
                     /calculated_mol_wt=62886
     Region          8..495
                     /region_name="SLC5sbd_CHT"
                     /note="Na(+)- and Cl(-)-dependent choline cotransporter
                     CHT and related proteins; solute-binding domain; cd11474"
                     /db_xref="CDD:271368"
     Site            order(60,63,343,346..347)
                     /site_type="other"
                     /note="Na binding site [ion binding]"
                     /db_xref="CDD:271368"
     CDS             1..578
                     /gene="SLC5A7"
                     /coded_by="XM_054057055.1:146..1882"
                     /db_xref="GeneID:104056630"
ORIGIN      
        1 mafhveglva iivfylaila vgiwaawktk ntgsegdrse aiivggrdig llvggftmta
       61 twvgggying taeavyvpgy glawaqapig yslslivggl ffakpmrskg yvtmldpfqq
      121 tygkrmggll fipalmgemf waaaifsalg atisviidvn vnisviisal iatmytlvgg
      181 lysvaytdvv qlfciflglw isvpfamshp avtdigltav hpvyqapwlg sinsvdiytw
      241 ldsfllltfg gipwqayfqr vlssssatya qflsilaafg cfvmalpail igaigastaw
      301 netaygfpdp mtkkeadmil pivlqylcpv yisffglgav saavmssads silsassmfa
      361 rniyqlsfrq nasdreivwv mritvflfga aatamallas svyglwylss dlvyiiifpq
      421 llcvlfikgt ntygaiagyl fglvlritgg epylylqpli yypgcypden niytqrfpfk
      481 tlamltsfft niivsylaky lfesgtlppk ldfldavvar ysrehmdkat lvksdnivln
      541 elapvnprhs ltlsstfvnk eafnyvdssp elsntedn
//
LOCUS       XP_009563429             371 aa            linear   VRT 09-MAR-2023
DEFINITION  ileal sodium/bile acid cotransporter [Cuculus canorus].
ACCESSION   XP_009563429
VERSION     XP_009563429.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565134.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..371
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..371
                     /product="ileal sodium/bile acid cotransporter"
                     /calculated_mol_wt=40390
     Region          45..328
                     /region_name="bass"
                     /note="bile acid transporter; TIGR00841"
                     /db_xref="CDD:188087"
     CDS             1..371
                     /gene="SLC10A2"
                     /coded_by="XM_009565134.2:135..1250"
                     /db_xref="GeneID:104062989"
ORIGIN      
        1 mqtyllsqqf nagslaenst acpanatvcn gtscvlaedn fnetlsvils avlttmlalv
       61 mfsmgcnvev krfwehvkrp wgifvgflcq fgimpltafl lslafnvlpv qavvvlimgc
      121 cpggtasnii aywvdgdmdl sismttsstl lamgmmplcl fiytkmwtds saivlpynsi
      181 gislvalvip vslgmyvnyr wpskakiilk igsivgaili vviavvggil ykgswvispk
      241 lwiigtifpa agyslgffla riaglswhrc rtvsletgmq ntqlcstivq lsftpeqlel
      301 mftfpliysi fqlvfallil agyriyikrr vktktdvekt gekedtkstp phskinggfv
      361 snetittvpt s
//
LOCUS       XP_009557699             692 aa            linear   VRT 09-MAR-2023
DEFINITION  SLIT and NTRK-like protein 1 [Cuculus canorus].
ACCESSION   XP_009557699
VERSION     XP_009557699.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009559404.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009557699.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..692
                     /product="SLIT and NTRK-like protein 1"
                     /calculated_mol_wt=77424
     Region          62..83
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <63..>212
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          84..107
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          108..131
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          132..155
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          156..177
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          212..>250
                     /region_name="LRRCT"
                     /note="Leucine rich repeat C-terminal domain; smart00082"
                     /db_xref="CDD:214507"
     Region          <354..>527
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          354..370
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          375..422
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          423..446
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          447..470
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          471..493
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          494..526
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          527..577
                     /region_name="LRRCT"
                     /note="Leucine rich repeat C-terminal domain; smart00082"
                     /db_xref="CDD:214507"
     CDS             1..692
                     /gene="SLITRK1"
                     /coded_by="XM_009559404.2:283..2361"
                     /db_xref="GeneID:104057964"
ORIGIN      
        1 mllwilllet slcfaagnvt gdvckekica cneiegdlhv dcekkgftsl qhftapasqf
       61 yhlflhgnsl trlfpnefan fynavslhme nnglheivpg aflglqlvkr lhinnnkiks
      121 frkqtflgld dleylqadfn llrdidpgaf rdlnklevli lndnlistlp pnvfqyvpit
      181 hldlrgnrlk tlpyeevleq ipgiaeille dnpwdctcdl lslkewleni pknaligrvi
      241 ceaptrlqgk dlnetteqel ckknrvdssl aappaeeetc dpgpiptpfk ihgkedpatp
      301 gsgpnggtki pvnwqiktrp taavstvsvk sklsatvscp hicscdqipg sglkvncndr
      361 nvsslvdlkp kpsnvqelfl rdnkihtirk shfldyrkln lldlgnnnia tvenntfknl
      421 fdlrwlymds nyldtlsrek ftglqnleyl nvefngiqli mpgtfnampk lrvlilnnnl
      481 lrslpvdvfa gvslsklsih nnyfmylpva gvldqltsit qidlhgnpwd ctcpivpfkq
      541 waemlrpkvi msdlrcespe dffkedfesl sndvicpqlk isptlistnk nstgltetgt
      601 hsnsyletsr vsisvlvpgl llvfvtsaft vvgmlvfilr nrkrskrrda nssaseinsl
      661 qtvcdssywh ngpystdgah rvydcgshsl sd
//
LOCUS       XP_053913032             232 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-2 receptor subunit alpha [Cuculus canorus].
ACCESSION   XP_053913032
VERSION     XP_053913032.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054057057.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071401) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..232
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..232
                     /product="interleukin-2 receptor subunit alpha"
                     /calculated_mol_wt=25789
     Region          23..81
                     /region_name="Sushi"
                     /note="Sushi repeat (SCR repeat); pfam00084"
                     /db_xref="CDD:459664"
     Region          126..185
                     /region_name="CCP"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     cd00033"
                     /db_xref="CDD:153056"
     Site            order(136,154)
                     /site_type="active"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     CDS             1..232
                     /gene="LOC104065023"
                     /coded_by="XM_054057057.1:212..910"
                     /db_xref="GeneID:104065023"
ORIGIN      
        1 melkcllmwl llgsikgskt eecpdlpvte fadvtaetya pgtklyyqcd ngytrrkgqy
       61 lgiecmrteh gasweyavfq cierkdlssa aptmkldftq kserktespa pqkpenlsel
      121 gqkdfcgppk siphaslsse ksyhlgqvlh fkcqsgfdkr lptsgtivck mvngkitwtp
      181 lemrctndss yfeesppqti eqgsnhpsfs ssvilpvtai flvlviipcv fv
//
LOCUS       XP_053931083             963 aa            linear   VRT 09-MAR-2023
DEFINITION  dystrophin-related protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931083
VERSION     XP_053931083.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075108.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..963
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..963
                     /product="dystrophin-related protein 2 isoform X1"
                     /calculated_mol_wt=109389
     Region          98..326
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            216..221
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          344..372
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(356,367)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          409..570
                     /region_name="EFh_DRP-2"
                     /note="EF-hand-like motif found in dystrophin-related
                     protein 2 (DRP-2); cd16248"
                     /db_xref="CDD:320006"
     Region          409..447
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320006"
     Region          455..489
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320006"
     Region          495..531
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320006"
     Region          544..570
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320006"
     Region          595..643
                     /region_name="ZZ_dystrophin"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     dystrophin and dystrobrevin. The ZZ motif coordinates two
                     zinc ions and most likely participates in ligand binding
                     or molecular scaffolding. Dystrophin attaches actin
                     filaments to an integral membrane...; cd02334"
                     /db_xref="CDD:239074"
     Site            order(597,600,612,615,621,624,634,638)
                     /site_type="other"
                     /note="Zinc-binding sites [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(597,600,621,624)
                     /site_type="other"
                     /note="zinc cluster 1 [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(598,609,611,617,619)
                     /site_type="active"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(610,625,640,643)
                     /site_type="active"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(612,615,634,638)
                     /site_type="other"
                     /note="zinc cluster 2 [ion binding]"
                     /db_xref="CDD:239074"
     CDS             1..963
                     /gene="DRP2"
                     /coded_by="XM_054075108.1:423..3314"
                     /db_xref="GeneID:104069015"
ORIGIN      
        1 mqplvmqewp yvpprcpewh vtdraqhsss ahplsqveas qdgagpscit pralssairp
       61 qsplemnlcw neikkkshsl rarleafsdh sgklqvplqe iidwlgqkde elsaqlplrg
      121 dvllvqqeke thaafmeevk srgpyiysvl esaqaflsqh pfeeleepas eskdvsprhr
      181 iqnisrfvwk qanvaselwe kltarcvdqh rhiertleql leikgameel sttldqaesv
      241 retwepigdl fidslpehiq stklfkeels pmkdgvkvvn dlahqlaisd vhlsmensrt
      301 leqintrwkq lqasinerlk qlqdahrdfg pgsqhflsss vqvpwerais pnkvpyyinh
      361 qaqttcwdhp kmmelyqtla dlnnikfsay rtamklrrvq kalrldmvtl ataleifneh
      421 dlqpsdramd vvevihclta lyerleeerg ilvnvplcvd mslnwllnvf dsgrsgkmra
      481 lsfktgiacl cgtevkekfq ylfsqvanag glcdqrqlgv llheaiqvpr qlgevaafgg
      541 snvepsirsc frfsngkpai easqflewan lepqsmvwla vlhrvtmaeq vkhqtkcsvc
      601 rqcpikgfry rslkqfnvdi cqtcfltgra skgnklhypi meyytpttss enmrdfattl
      661 knkfrskqyf skhpqrgylp vqsvlesdfs eapasspmlp hadthsrieh fasrlaemes
      721 qncsffsdsl spddslcfst ccnrdedqyl lrhsspitdr epggsqqvpg slnmddkgel
      781 erilahlede nrilqgelrr lkwqhdeave sptlatgtpe svqdprndel laearilrqh
      841 ksrletrmqi ledhnkqles qlhrlrelll qppaesdgng saasslassp hqsessqake
      901 kehntpdtea adeveaktqe vsvcledime klrsafpnsq dpypgedeap vtmgrwkqwc
      961 kvs
//
LOCUS       XP_053931084             963 aa            linear   VRT 09-MAR-2023
DEFINITION  dystrophin-related protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931084
VERSION     XP_053931084.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075109.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..963
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..963
                     /product="dystrophin-related protein 2 isoform X1"
                     /calculated_mol_wt=109389
     Region          98..326
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            216..221
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          344..372
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(356,367)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          409..570
                     /region_name="EFh_DRP-2"
                     /note="EF-hand-like motif found in dystrophin-related
                     protein 2 (DRP-2); cd16248"
                     /db_xref="CDD:320006"
     Region          409..447
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320006"
     Region          455..489
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320006"
     Region          495..531
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320006"
     Region          544..570
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320006"
     Region          595..643
                     /region_name="ZZ_dystrophin"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     dystrophin and dystrobrevin. The ZZ motif coordinates two
                     zinc ions and most likely participates in ligand binding
                     or molecular scaffolding. Dystrophin attaches actin
                     filaments to an integral membrane...; cd02334"
                     /db_xref="CDD:239074"
     Site            order(597,600,612,615,621,624,634,638)
                     /site_type="other"
                     /note="Zinc-binding sites [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(597,600,621,624)
                     /site_type="other"
                     /note="zinc cluster 1 [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(598,609,611,617,619)
                     /site_type="active"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(610,625,640,643)
                     /site_type="active"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(612,615,634,638)
                     /site_type="other"
                     /note="zinc cluster 2 [ion binding]"
                     /db_xref="CDD:239074"
     CDS             1..963
                     /gene="DRP2"
                     /coded_by="XM_054075109.1:280..3171"
                     /db_xref="GeneID:104069015"
ORIGIN      
        1 mqplvmqewp yvpprcpewh vtdraqhsss ahplsqveas qdgagpscit pralssairp
       61 qsplemnlcw neikkkshsl rarleafsdh sgklqvplqe iidwlgqkde elsaqlplrg
      121 dvllvqqeke thaafmeevk srgpyiysvl esaqaflsqh pfeeleepas eskdvsprhr
      181 iqnisrfvwk qanvaselwe kltarcvdqh rhiertleql leikgameel sttldqaesv
      241 retwepigdl fidslpehiq stklfkeels pmkdgvkvvn dlahqlaisd vhlsmensrt
      301 leqintrwkq lqasinerlk qlqdahrdfg pgsqhflsss vqvpwerais pnkvpyyinh
      361 qaqttcwdhp kmmelyqtla dlnnikfsay rtamklrrvq kalrldmvtl ataleifneh
      421 dlqpsdramd vvevihclta lyerleeerg ilvnvplcvd mslnwllnvf dsgrsgkmra
      481 lsfktgiacl cgtevkekfq ylfsqvanag glcdqrqlgv llheaiqvpr qlgevaafgg
      541 snvepsirsc frfsngkpai easqflewan lepqsmvwla vlhrvtmaeq vkhqtkcsvc
      601 rqcpikgfry rslkqfnvdi cqtcfltgra skgnklhypi meyytpttss enmrdfattl
      661 knkfrskqyf skhpqrgylp vqsvlesdfs eapasspmlp hadthsrieh fasrlaemes
      721 qncsffsdsl spddslcfst ccnrdedqyl lrhsspitdr epggsqqvpg slnmddkgel
      781 erilahlede nrilqgelrr lkwqhdeave sptlatgtpe svqdprndel laearilrqh
      841 ksrletrmqi ledhnkqles qlhrlrelll qppaesdgng saasslassp hqsessqake
      901 kehntpdtea adeveaktqe vsvcledime klrsafpnsq dpypgedeap vtmgrwkqwc
      961 kvs
//
LOCUS       XP_009570277             955 aa            linear   VRT 09-MAR-2023
DEFINITION  dystrophin-related protein 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_009570277
VERSION     XP_009570277.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009571982.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009570277.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..955
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..955
                     /product="dystrophin-related protein 2 isoform X2"
                     /calculated_mol_wt=108474
     Region          98..326
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            216..221
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          344..372
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(356,367)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          409..570
                     /region_name="EFh_DRP-2"
                     /note="EF-hand-like motif found in dystrophin-related
                     protein 2 (DRP-2); cd16248"
                     /db_xref="CDD:320006"
     Region          409..447
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320006"
     Region          455..489
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320006"
     Region          495..531
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320006"
     Region          544..570
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320006"
     Region          595..643
                     /region_name="ZZ_dystrophin"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     dystrophin and dystrobrevin. The ZZ motif coordinates two
                     zinc ions and most likely participates in ligand binding
                     or molecular scaffolding. Dystrophin attaches actin
                     filaments to an integral membrane...; cd02334"
                     /db_xref="CDD:239074"
     Site            order(597,600,612,615,621,624,634,638)
                     /site_type="other"
                     /note="Zinc-binding sites [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(597,600,621,624)
                     /site_type="other"
                     /note="zinc cluster 1 [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(598,609,611,617,619)
                     /site_type="active"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(610,625,640,643)
                     /site_type="active"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(612,615,634,638)
                     /site_type="other"
                     /note="zinc cluster 2 [ion binding]"
                     /db_xref="CDD:239074"
     CDS             1..955
                     /gene="DRP2"
                     /coded_by="XM_009571982.2:423..3290"
                     /db_xref="GeneID:104069015"
ORIGIN      
        1 mqplvmqewp yvpprcpewh vtdraqhsss ahplsqveas qdgagpscit pralssairp
       61 qsplemnlcw neikkkshsl rarleafsdh sgklqvplqe iidwlgqkde elsaqlplrg
      121 dvllvqqeke thaafmeevk srgpyiysvl esaqaflsqh pfeeleepas eskdvsprhr
      181 iqnisrfvwk qanvaselwe kltarcvdqh rhiertleql leikgameel sttldqaesv
      241 retwepigdl fidslpehiq stklfkeels pmkdgvkvvn dlahqlaisd vhlsmensrt
      301 leqintrwkq lqasinerlk qlqdahrdfg pgsqhflsss vqvpwerais pnkvpyyinh
      361 qaqttcwdhp kmmelyqtla dlnnikfsay rtamklrrvq kalrldmvtl ataleifneh
      421 dlqpsdramd vvevihclta lyerleeerg ilvnvplcvd mslnwllnvf dsgrsgkmra
      481 lsfktgiacl cgtevkekfq ylfsqvanag glcdqrqlgv llheaiqvpr qlgevaafgg
      541 snvepsirsc frfsngkpai easqflewan lepqsmvwla vlhrvtmaeq vkhqtkcsvc
      601 rqcpikgfry rslkqfnvdi cqtcfltgra skgnklhypi meyytpttss enmrdfattl
      661 knkfrskqyf skhpqrgylp vqsvlesdfs eapasspmlp hadthsrieh fasrlaemes
      721 qncsffsdsl spddsldedq yllrhsspit drepggsqqv pgslnmddkg elerilahle
      781 denrilqgel rrlkwqhdea vesptlatgt pesvqdprnd ellaearilr qhksrletrm
      841 qiledhnkql esqlhrlrel llqppaesdg ngsaasslas sphqsessqa kekehntpdt
      901 eaadeveakt qevsvcledi meklrsafpn sqdpypgede apvtmgrwkq wckvs
//
LOCUS       XP_053931085             946 aa            linear   VRT 09-MAR-2023
DEFINITION  dystrophin-related protein 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931085
VERSION     XP_053931085.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075110.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..946
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..946
                     /product="dystrophin-related protein 2 isoform X3"
                     /calculated_mol_wt=107330
     Region          98..326
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            216..221
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          344..372
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(356,367)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          409..570
                     /region_name="EFh_DRP-2"
                     /note="EF-hand-like motif found in dystrophin-related
                     protein 2 (DRP-2); cd16248"
                     /db_xref="CDD:320006"
     Region          409..447
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320006"
     Region          455..489
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320006"
     Region          495..531
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320006"
     Region          544..570
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320006"
     Region          595..643
                     /region_name="ZZ_dystrophin"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     dystrophin and dystrobrevin. The ZZ motif coordinates two
                     zinc ions and most likely participates in ligand binding
                     or molecular scaffolding. Dystrophin attaches actin
                     filaments to an integral membrane...; cd02334"
                     /db_xref="CDD:239074"
     Site            order(597,600,612,615,621,624,634,638)
                     /site_type="other"
                     /note="Zinc-binding sites [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(597,600,621,624)
                     /site_type="other"
                     /note="zinc cluster 1 [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(598,609,611,617,619)
                     /site_type="active"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(610,625,640,643)
                     /site_type="active"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(612,615,634,638)
                     /site_type="other"
                     /note="zinc cluster 2 [ion binding]"
                     /db_xref="CDD:239074"
     CDS             1..946
                     /gene="DRP2"
                     /coded_by="XM_054075110.1:423..3263"
                     /db_xref="GeneID:104069015"
ORIGIN      
        1 mqplvmqewp yvpprcpewh vtdraqhsss ahplsqveas qdgagpscit pralssairp
       61 qsplemnlcw neikkkshsl rarleafsdh sgklqvplqe iidwlgqkde elsaqlplrg
      121 dvllvqqeke thaafmeevk srgpyiysvl esaqaflsqh pfeeleepas eskdvsprhr
      181 iqnisrfvwk qanvaselwe kltarcvdqh rhiertleql leikgameel sttldqaesv
      241 retwepigdl fidslpehiq stklfkeels pmkdgvkvvn dlahqlaisd vhlsmensrt
      301 leqintrwkq lqasinerlk qlqdahrdfg pgsqhflsss vqvpwerais pnkvpyyinh
      361 qaqttcwdhp kmmelyqtla dlnnikfsay rtamklrrvq kalrldmvtl ataleifneh
      421 dlqpsdramd vvevihclta lyerleeerg ilvnvplcvd mslnwllnvf dsgrsgkmra
      481 lsfktgiacl cgtevkekfq ylfsqvanag glcdqrqlgv llheaiqvpr qlgevaafgg
      541 snvepsirsc frfsngkpai easqflewan lepqsmvwla vlhrvtmaeq vkhqtkcsvc
      601 rqcpikgfry rslkqfnvdi cqtcfltgra skgnklhypi meyytpttss enmrdfattl
      661 knkfrskqyf skhpqrgylp vqsvlesdfs eapasspmlp hadthsrieh fasrlaemes
      721 qncsffsdsl spddslcfst ccnrdedqyl lrhsspitdr epggsqqvpg slnmddkgel
      781 erilahlede nrilqgelrr lkwqhdeave sptlatgtpe svqdprndel laearilrqh
      841 ksrletrmqi ledhnkqles qlhrlrelll qppaesdgng saasslassp hqsessqake
      901 kehntpdtea adeveaktqe vsvcledime klrsafpnsq gmtsli
//
LOCUS       XP_053931086             938 aa            linear   VRT 09-MAR-2023
DEFINITION  dystrophin-related protein 2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931086
VERSION     XP_053931086.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075111.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..938
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..938
                     /product="dystrophin-related protein 2 isoform X4"
                     /calculated_mol_wt=106415
     Region          98..326
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            216..221
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          344..372
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(356,367)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          409..570
                     /region_name="EFh_DRP-2"
                     /note="EF-hand-like motif found in dystrophin-related
                     protein 2 (DRP-2); cd16248"
                     /db_xref="CDD:320006"
     Region          409..447
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320006"
     Region          455..489
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320006"
     Region          495..531
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320006"
     Region          544..570
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320006"
     Region          595..643
                     /region_name="ZZ_dystrophin"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     dystrophin and dystrobrevin. The ZZ motif coordinates two
                     zinc ions and most likely participates in ligand binding
                     or molecular scaffolding. Dystrophin attaches actin
                     filaments to an integral membrane...; cd02334"
                     /db_xref="CDD:239074"
     Site            order(597,600,612,615,621,624,634,638)
                     /site_type="other"
                     /note="Zinc-binding sites [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(597,600,621,624)
                     /site_type="other"
                     /note="zinc cluster 1 [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(598,609,611,617,619)
                     /site_type="active"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(610,625,640,643)
                     /site_type="active"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(612,615,634,638)
                     /site_type="other"
                     /note="zinc cluster 2 [ion binding]"
                     /db_xref="CDD:239074"
     CDS             1..938
                     /gene="DRP2"
                     /coded_by="XM_054075111.1:423..3239"
                     /db_xref="GeneID:104069015"
ORIGIN      
        1 mqplvmqewp yvpprcpewh vtdraqhsss ahplsqveas qdgagpscit pralssairp
       61 qsplemnlcw neikkkshsl rarleafsdh sgklqvplqe iidwlgqkde elsaqlplrg
      121 dvllvqqeke thaafmeevk srgpyiysvl esaqaflsqh pfeeleepas eskdvsprhr
      181 iqnisrfvwk qanvaselwe kltarcvdqh rhiertleql leikgameel sttldqaesv
      241 retwepigdl fidslpehiq stklfkeels pmkdgvkvvn dlahqlaisd vhlsmensrt
      301 leqintrwkq lqasinerlk qlqdahrdfg pgsqhflsss vqvpwerais pnkvpyyinh
      361 qaqttcwdhp kmmelyqtla dlnnikfsay rtamklrrvq kalrldmvtl ataleifneh
      421 dlqpsdramd vvevihclta lyerleeerg ilvnvplcvd mslnwllnvf dsgrsgkmra
      481 lsfktgiacl cgtevkekfq ylfsqvanag glcdqrqlgv llheaiqvpr qlgevaafgg
      541 snvepsirsc frfsngkpai easqflewan lepqsmvwla vlhrvtmaeq vkhqtkcsvc
      601 rqcpikgfry rslkqfnvdi cqtcfltgra skgnklhypi meyytpttss enmrdfattl
      661 knkfrskqyf skhpqrgylp vqsvlesdfs eapasspmlp hadthsrieh fasrlaemes
      721 qncsffsdsl spddsldedq yllrhsspit drepggsqqv pgslnmddkg elerilahle
      781 denrilqgel rrlkwqhdea vesptlatgt pesvqdprnd ellaearilr qhksrletrm
      841 qiledhnkql esqlhrlrel llqppaesdg ngsaasslas sphqsessqa kekehntpdt
      901 eaadeveakt qevsvcledi meklrsafpn sqgmtsli
//
LOCUS       XP_053931087             898 aa            linear   VRT 09-MAR-2023
DEFINITION  dystrophin-related protein 2 isoform X5 [Cuculus canorus].
ACCESSION   XP_053931087
VERSION     XP_053931087.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075112.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..898
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..898
                     /product="dystrophin-related protein 2 isoform X5"
                     /calculated_mol_wt=102260
     Region          33..261
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            151..156
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          279..307
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(291,302)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          344..505
                     /region_name="EFh_DRP-2"
                     /note="EF-hand-like motif found in dystrophin-related
                     protein 2 (DRP-2); cd16248"
                     /db_xref="CDD:320006"
     Region          344..382
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320006"
     Region          390..424
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320006"
     Region          430..466
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320006"
     Region          479..505
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320006"
     Region          530..578
                     /region_name="ZZ_dystrophin"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     dystrophin and dystrobrevin. The ZZ motif coordinates two
                     zinc ions and most likely participates in ligand binding
                     or molecular scaffolding. Dystrophin attaches actin
                     filaments to an integral membrane...; cd02334"
                     /db_xref="CDD:239074"
     Site            order(532,535,547,550,556,559,569,573)
                     /site_type="other"
                     /note="Zinc-binding sites [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(532,535,556,559)
                     /site_type="other"
                     /note="zinc cluster 1 [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(533,544,546,552,554)
                     /site_type="active"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(545,560,575,578)
                     /site_type="active"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(547,550,569,573)
                     /site_type="other"
                     /note="zinc cluster 2 [ion binding]"
                     /db_xref="CDD:239074"
     CDS             1..898
                     /gene="DRP2"
                     /coded_by="XM_054075112.1:248..2944"
                     /db_xref="GeneID:104069015"
ORIGIN      
        1 mnlcwneikk kshslrarle afsdhsgklq vplqeiidwl gqkdeelsaq lplrgdvllv
       61 qqekethaaf meevksrgpy iysvlesaqa flsqhpfeel eepaseskdv sprhriqnis
      121 rfvwkqanva selwekltar cvdqhrhier tleqlleikg ameelsttld qaesvretwe
      181 pigdlfidsl pehiqstklf keelspmkdg vkvvndlahq laisdvhlsm ensrtleqin
      241 trwkqlqasi nerlkqlqda hrdfgpgsqh flsssvqvpw eraispnkvp yyinhqaqtt
      301 cwdhpkmmel yqtladlnni kfsayrtamk lrrvqkalrl dmvtlatale ifnehdlqps
      361 dramdvvevi hcltalyerl eeergilvnv plcvdmslnw llnvfdsgrs gkmralsfkt
      421 giaclcgtev kekfqylfsq vanagglcdq rqlgvllhea iqvprqlgev aafggsnvep
      481 sirscfrfsn gkpaieasqf lewanlepqs mvwlavlhrv tmaeqvkhqt kcsvcrqcpi
      541 kgfryrslkq fnvdicqtcf ltgraskgnk lhypimeyyt pttssenmrd fattlknkfr
      601 skqyfskhpq rgylpvqsvl esdfseapas spmlphadth sriehfasrl aemesqncsf
      661 fsdslspdds lcfstccnrd edqyllrhss pitdrepggs qqvpgslnmd dkgelerila
      721 hledenrilq gelrrlkwqh deavesptla tgtpesvqdp rndellaear ilrqhksrle
      781 trmqiledhn kqlesqlhrl relllqppae sdgngsaass lassphqses sqakekehnt
      841 pdteaadeve aktqevsvcl edimeklrsa fpnsqdpypg edeapvtmgr wkqwckvs
//
LOCUS       XP_053931088             898 aa            linear   VRT 09-MAR-2023
DEFINITION  dystrophin-related protein 2 isoform X5 [Cuculus canorus].
ACCESSION   XP_053931088
VERSION     XP_053931088.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075113.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..898
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..898
                     /product="dystrophin-related protein 2 isoform X5"
                     /calculated_mol_wt=102260
     Region          33..261
                     /region_name="SPEC"
                     /note="Spectrin repeats, found in several proteins
                     involved in cytoskeletal structure; family members include
                     spectrin, alpha-actinin and dystrophin; the spectrin
                     repeat forms a three helix bundle with the second helix
                     interrupted by proline in some sequences; cd00176"
                     /db_xref="CDD:238103"
     Site            151..156
                     /site_type="active"
                     /note="linker region [active]"
                     /db_xref="CDD:238103"
     Region          279..307
                     /region_name="WW"
                     /note="Two conserved tryptophans domain; also known as the
                     WWP or rsp5 domain; around 40 amino acids; functions as an
                     interaction module in a diverse set of signalling
                     proteins; binds specific proline-rich sequences but at low
                     affinities compared to other...; cd00201"
                     /db_xref="CDD:238122"
     Site            order(291,302)
                     /site_type="active"
                     /note="binding pocket [active]"
                     /db_xref="CDD:238122"
     Region          344..505
                     /region_name="EFh_DRP-2"
                     /note="EF-hand-like motif found in dystrophin-related
                     protein 2 (DRP-2); cd16248"
                     /db_xref="CDD:320006"
     Region          344..382
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320006"
     Region          390..424
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320006"
     Region          430..466
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320006"
     Region          479..505
                     /region_name="EF-hand-like motif"
                     /note="EF-hand-like motif [structural motif]"
                     /db_xref="CDD:320006"
     Region          530..578
                     /region_name="ZZ_dystrophin"
                     /note="Zinc finger, ZZ type. Zinc finger present in
                     dystrophin and dystrobrevin. The ZZ motif coordinates two
                     zinc ions and most likely participates in ligand binding
                     or molecular scaffolding. Dystrophin attaches actin
                     filaments to an integral membrane...; cd02334"
                     /db_xref="CDD:239074"
     Site            order(532,535,547,550,556,559,569,573)
                     /site_type="other"
                     /note="Zinc-binding sites [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(532,535,556,559)
                     /site_type="other"
                     /note="zinc cluster 1 [ion binding]"
                     /db_xref="CDD:239074"
     Site            order(533,544,546,552,554)
                     /site_type="active"
                     /note="putative charged binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(545,560,575,578)
                     /site_type="active"
                     /note="putative hydrophobic binding surface [active]"
                     /db_xref="CDD:239074"
     Site            order(547,550,569,573)
                     /site_type="other"
                     /note="zinc cluster 2 [ion binding]"
                     /db_xref="CDD:239074"
     CDS             1..898
                     /gene="DRP2"
                     /coded_by="XM_054075113.1:464..3160"
                     /db_xref="GeneID:104069015"
ORIGIN      
        1 mnlcwneikk kshslrarle afsdhsgklq vplqeiidwl gqkdeelsaq lplrgdvllv
       61 qqekethaaf meevksrgpy iysvlesaqa flsqhpfeel eepaseskdv sprhriqnis
      121 rfvwkqanva selwekltar cvdqhrhier tleqlleikg ameelsttld qaesvretwe
      181 pigdlfidsl pehiqstklf keelspmkdg vkvvndlahq laisdvhlsm ensrtleqin
      241 trwkqlqasi nerlkqlqda hrdfgpgsqh flsssvqvpw eraispnkvp yyinhqaqtt
      301 cwdhpkmmel yqtladlnni kfsayrtamk lrrvqkalrl dmvtlatale ifnehdlqps
      361 dramdvvevi hcltalyerl eeergilvnv plcvdmslnw llnvfdsgrs gkmralsfkt
      421 giaclcgtev kekfqylfsq vanagglcdq rqlgvllhea iqvprqlgev aafggsnvep
      481 sirscfrfsn gkpaieasqf lewanlepqs mvwlavlhrv tmaeqvkhqt kcsvcrqcpi
      541 kgfryrslkq fnvdicqtcf ltgraskgnk lhypimeyyt pttssenmrd fattlknkfr
      601 skqyfskhpq rgylpvqsvl esdfseapas spmlphadth sriehfasrl aemesqncsf
      661 fsdslspdds lcfstccnrd edqyllrhss pitdrepggs qqvpgslnmd dkgelerila
      721 hledenrilq gelrrlkwqh deavesptla tgtpesvqdp rndellaear ilrqhksrle
      781 trmqiledhn kqlesqlhrl relllqppae sdgngsaass lassphqses sqakekehnt
      841 pdteaadeve aktqevsvcl edimeklrsa fpnsqdpypg edeapvtmgr wkqwckvs
//
LOCUS       XP_053931089             783 aa            linear   VRT 09-MAR-2023
DEFINITION  tyrosine-protein kinase BTK isoform X1 [Cuculus canorus].
ACCESSION   XP_053931089
VERSION     XP_053931089.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075114.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..783
                     /product="tyrosine-protein kinase BTK isoform X1"
                     /calculated_mol_wt=89437
     Region          131..291
                     /region_name="PH_Btk"
                     /note="Bruton's tyrosine kinase pleckstrin homology (PH)
                     domain; cd01238"
                     /db_xref="CDD:269944"
     Site            order(133..134,152..154,167,241)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:269944"
     Site            order(137,139..140,142..143,149,153,178)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:269944"
     Site            order(268,279..280,290)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:269944"
     Region          340..394
                     /region_name="SH3_BTK"
                     /note="Src Homology 3 domain of Bruton's tyrosine kinase;
                     cd11906"
                     /db_xref="CDD:212839"
     Site            order(346,348,351,355,373..374,388,390..391)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212839"
     Region          397..502
                     /region_name="SH2_Tec_Btk"
                     /note="Src homology 2 (SH2) domain found in Tec protein,
                     Bruton's tyrosine kinase (Btk); cd10397"
                     /db_xref="CDD:198260"
     Site            order(411,430)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:198260"
     Site            order(485,493..494)
                     /site_type="other"
                     /note="hydrophobic binding pocket [polypeptide binding]"
                     /db_xref="CDD:198260"
     Region          521..776
                     /region_name="PTKc_Btk_Bmx"
                     /note="Catalytic domain of the Protein Tyrosine Kinases,
                     Bruton's tyrosine kinase and Bone marrow kinase on the X
                     chromosome; cd05113"
                     /db_xref="CDD:173657"
     Site            order(532,540,552,554,573,596,598..602,604,645,649,652,
                     662..663,666,680..684,693,727)
                     /site_type="active"
                     /db_xref="CDD:173657"
     Site            order(532,540,552,554,573,596,598..602,604,652,662..663,
                     666)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:173657"
     Site            order(645,649,680..684,693,727)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:173657"
     Site            662..686
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:173657"
     CDS             1..783
                     /gene="BTK"
                     /coded_by="XM_054075114.1:263..2614"
                     /db_xref="GeneID:104069017"
ORIGIN      
        1 mqrgalgals qhrvvwerrs qehegcdalg agmalltspa rsrgsswqel pcstclrpht
       61 sacilhgara vvpassrrai pstgcqated tartcpiypa llavtqllql kqpskhgveq
      121 aegaimasvi lesiflkrsq qkkktsplnf kkrlflltes klsyyeydfe rgrrgskkgs
      181 vdiekitcve tvvpennppp erqvprkged ynnmeqisii erfpypfqvv ydegplyvfs
      241 pteelrkrwi hqlknviryn sdlvqkyhpc fwidgqylcc sqtaknamgc qilesrngsl
      301 kagrshrktk kplpptpqed qmvmkpllpe ptpstagemk kvvalynylp mnaqdlqlqk
      361 geeylilees hlpwwkardk ngregyipsn yvtetrnsle ifewysknit rsqaeqllkq
      421 egkeggfivr dstsktgkyt vsvyakssvd pqgmirhyvv cctpqnqyyl aekhlfntip
      481 elityhqhns aglisrlkyp vsphqksaps taglgygswe idpkdltflk elgtgqfgvv
      541 kygkwrgqyd vaikmiregs msedefidea kvmmnlshek lvqlygvctk qrpifiitey
      601 mangcllnfl retrrrfqpa ellemckdvc eameyleskq flhrdlaarn clvndqgivk
      661 vsdfglsryv lddeytssmg skfpvrwspp evllyskfss ksdvwafgvl mwevyslgkm
      721 pyerfnnset tehviqglrl yrpqqaserv ytimyscwhe kaeerptfta llgsilditd
      781 eep
//
LOCUS       XP_053931090             658 aa            linear   VRT 09-MAR-2023
DEFINITION  tyrosine-protein kinase BTK isoform X2 [Cuculus canorus].
ACCESSION   XP_053931090
VERSION     XP_053931090.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075115.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..658
                     /product="tyrosine-protein kinase BTK isoform X2"
                     /calculated_mol_wt=76144
     Region          6..166
                     /region_name="PH_Btk"
                     /note="Bruton's tyrosine kinase pleckstrin homology (PH)
                     domain; cd01238"
                     /db_xref="CDD:269944"
     Site            order(8..9,27..29,42,116)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:269944"
     Site            order(12,14..15,17..18,24,28,53)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:269944"
     Site            order(143,154..155,165)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:269944"
     Region          215..269
                     /region_name="SH3_BTK"
                     /note="Src Homology 3 domain of Bruton's tyrosine kinase;
                     cd11906"
                     /db_xref="CDD:212839"
     Site            order(221,223,226,230,248..249,263,265..266)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212839"
     Region          272..377
                     /region_name="SH2_Tec_Btk"
                     /note="Src homology 2 (SH2) domain found in Tec protein,
                     Bruton's tyrosine kinase (Btk); cd10397"
                     /db_xref="CDD:198260"
     Site            order(286,305)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:198260"
     Site            order(360,368..369)
                     /site_type="other"
                     /note="hydrophobic binding pocket [polypeptide binding]"
                     /db_xref="CDD:198260"
     Region          396..651
                     /region_name="PTKc_Btk_Bmx"
                     /note="Catalytic domain of the Protein Tyrosine Kinases,
                     Bruton's tyrosine kinase and Bone marrow kinase on the X
                     chromosome; cd05113"
                     /db_xref="CDD:173657"
     Site            order(407,415,427,429,448,471,473..477,479,520,524,527,
                     537..538,541,555..559,568,602)
                     /site_type="active"
                     /db_xref="CDD:173657"
     Site            order(407,415,427,429,448,471,473..477,479,527,537..538,
                     541)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:173657"
     Site            order(520,524,555..559,568,602)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:173657"
     Site            537..561
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:173657"
     CDS             1..658
                     /gene="BTK"
                     /coded_by="XM_054075115.1:249..2225"
                     /db_xref="GeneID:104069017"
ORIGIN      
        1 masvilesif lkrsqqkkkt splnfkkrlf lltesklsyy eydfergrrg skkgsvdiek
       61 itcvetvvpe nnppperqvp rkgedynnme qisiierfpy pfqvvydegp lyvfspteel
      121 rkrwihqlkn virynsdlvq kyhpcfwidg qylccsqtak namgcqiles rngslkagrs
      181 hrktkkplpp tpqedqmvmk pllpeptpst agemkkvval ynylpmnaqd lqlqkgeeyl
      241 ileeshlpww kardkngreg yipsnyvtet rnsleifewy sknitrsqae qllkqegkeg
      301 gfivrdstsk tgkytvsvya kssvdpqgmi rhyvvcctpq nqyylaekhl fntipelity
      361 hqhnsaglis rlkypvsphq ksapstaglg ygsweidpkd ltflkelgtg qfgvvkygkw
      421 rgqydvaikm iregsmsede fideakvmmn lsheklvqly gvctkqrpif iiteymangc
      481 llnflretrr rfqpaellem ckdvceamey leskqflhrd laarnclvnd qgivkvsdfg
      541 lsryvlddey tssmgskfpv rwsppevlly skfssksdvw afgvlmwevy slgkmpyerf
      601 nnsettehvi qglrlyrpqq aservytimy scwhekaeer ptftallgsi lditdeep
//
LOCUS       XP_053931091             658 aa            linear   VRT 09-MAR-2023
DEFINITION  tyrosine-protein kinase BTK isoform X2 [Cuculus canorus].
ACCESSION   XP_053931091
VERSION     XP_053931091.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075116.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..658
                     /product="tyrosine-protein kinase BTK isoform X2"
                     /calculated_mol_wt=76144
     Region          6..166
                     /region_name="PH_Btk"
                     /note="Bruton's tyrosine kinase pleckstrin homology (PH)
                     domain; cd01238"
                     /db_xref="CDD:269944"
     Site            order(8..9,27..29,42,116)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:269944"
     Site            order(12,14..15,17..18,24,28,53)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:269944"
     Site            order(143,154..155,165)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:269944"
     Region          215..269
                     /region_name="SH3_BTK"
                     /note="Src Homology 3 domain of Bruton's tyrosine kinase;
                     cd11906"
                     /db_xref="CDD:212839"
     Site            order(221,223,226,230,248..249,263,265..266)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212839"
     Region          272..377
                     /region_name="SH2_Tec_Btk"
                     /note="Src homology 2 (SH2) domain found in Tec protein,
                     Bruton's tyrosine kinase (Btk); cd10397"
                     /db_xref="CDD:198260"
     Site            order(286,305)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:198260"
     Site            order(360,368..369)
                     /site_type="other"
                     /note="hydrophobic binding pocket [polypeptide binding]"
                     /db_xref="CDD:198260"
     Region          396..651
                     /region_name="PTKc_Btk_Bmx"
                     /note="Catalytic domain of the Protein Tyrosine Kinases,
                     Bruton's tyrosine kinase and Bone marrow kinase on the X
                     chromosome; cd05113"
                     /db_xref="CDD:173657"
     Site            order(407,415,427,429,448,471,473..477,479,520,524,527,
                     537..538,541,555..559,568,602)
                     /site_type="active"
                     /db_xref="CDD:173657"
     Site            order(407,415,427,429,448,471,473..477,479,527,537..538,
                     541)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:173657"
     Site            order(520,524,555..559,568,602)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:173657"
     Site            537..561
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:173657"
     CDS             1..658
                     /gene="BTK"
                     /coded_by="XM_054075116.1:357..2333"
                     /db_xref="GeneID:104069017"
ORIGIN      
        1 masvilesif lkrsqqkkkt splnfkkrlf lltesklsyy eydfergrrg skkgsvdiek
       61 itcvetvvpe nnppperqvp rkgedynnme qisiierfpy pfqvvydegp lyvfspteel
      121 rkrwihqlkn virynsdlvq kyhpcfwidg qylccsqtak namgcqiles rngslkagrs
      181 hrktkkplpp tpqedqmvmk pllpeptpst agemkkvval ynylpmnaqd lqlqkgeeyl
      241 ileeshlpww kardkngreg yipsnyvtet rnsleifewy sknitrsqae qllkqegkeg
      301 gfivrdstsk tgkytvsvya kssvdpqgmi rhyvvcctpq nqyylaekhl fntipelity
      361 hqhnsaglis rlkypvsphq ksapstaglg ygsweidpkd ltflkelgtg qfgvvkygkw
      421 rgqydvaikm iregsmsede fideakvmmn lsheklvqly gvctkqrpif iiteymangc
      481 llnflretrr rfqpaellem ckdvceamey leskqflhrd laarnclvnd qgivkvsdfg
      541 lsryvlddey tssmgskfpv rwsppevlly skfssksdvw afgvlmwevy slgkmpyerf
      601 nnsettehvi qglrlyrpqq aservytimy scwhekaeer ptftallgsi lditdeep
//
LOCUS       XP_053931092             658 aa            linear   VRT 09-MAR-2023
DEFINITION  tyrosine-protein kinase BTK isoform X2 [Cuculus canorus].
ACCESSION   XP_053931092
VERSION     XP_053931092.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075117.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..658
                     /product="tyrosine-protein kinase BTK isoform X2"
                     /calculated_mol_wt=76144
     Region          6..166
                     /region_name="PH_Btk"
                     /note="Bruton's tyrosine kinase pleckstrin homology (PH)
                     domain; cd01238"
                     /db_xref="CDD:269944"
     Site            order(8..9,27..29,42,116)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:269944"
     Site            order(12,14..15,17..18,24,28,53)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:269944"
     Site            order(143,154..155,165)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:269944"
     Region          215..269
                     /region_name="SH3_BTK"
                     /note="Src Homology 3 domain of Bruton's tyrosine kinase;
                     cd11906"
                     /db_xref="CDD:212839"
     Site            order(221,223,226,230,248..249,263,265..266)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212839"
     Region          272..377
                     /region_name="SH2_Tec_Btk"
                     /note="Src homology 2 (SH2) domain found in Tec protein,
                     Bruton's tyrosine kinase (Btk); cd10397"
                     /db_xref="CDD:198260"
     Site            order(286,305)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:198260"
     Site            order(360,368..369)
                     /site_type="other"
                     /note="hydrophobic binding pocket [polypeptide binding]"
                     /db_xref="CDD:198260"
     Region          396..651
                     /region_name="PTKc_Btk_Bmx"
                     /note="Catalytic domain of the Protein Tyrosine Kinases,
                     Bruton's tyrosine kinase and Bone marrow kinase on the X
                     chromosome; cd05113"
                     /db_xref="CDD:173657"
     Site            order(407,415,427,429,448,471,473..477,479,520,524,527,
                     537..538,541,555..559,568,602)
                     /site_type="active"
                     /db_xref="CDD:173657"
     Site            order(407,415,427,429,448,471,473..477,479,527,537..538,
                     541)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:173657"
     Site            order(520,524,555..559,568,602)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:173657"
     Site            537..561
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:173657"
     CDS             1..658
                     /gene="BTK"
                     /coded_by="XM_054075117.1:336..2312"
                     /db_xref="GeneID:104069017"
ORIGIN      
        1 masvilesif lkrsqqkkkt splnfkkrlf lltesklsyy eydfergrrg skkgsvdiek
       61 itcvetvvpe nnppperqvp rkgedynnme qisiierfpy pfqvvydegp lyvfspteel
      121 rkrwihqlkn virynsdlvq kyhpcfwidg qylccsqtak namgcqiles rngslkagrs
      181 hrktkkplpp tpqedqmvmk pllpeptpst agemkkvval ynylpmnaqd lqlqkgeeyl
      241 ileeshlpww kardkngreg yipsnyvtet rnsleifewy sknitrsqae qllkqegkeg
      301 gfivrdstsk tgkytvsvya kssvdpqgmi rhyvvcctpq nqyylaekhl fntipelity
      361 hqhnsaglis rlkypvsphq ksapstaglg ygsweidpkd ltflkelgtg qfgvvkygkw
      421 rgqydvaikm iregsmsede fideakvmmn lsheklvqly gvctkqrpif iiteymangc
      481 llnflretrr rfqpaellem ckdvceamey leskqflhrd laarnclvnd qgivkvsdfg
      541 lsryvlddey tssmgskfpv rwsppevlly skfssksdvw afgvlmwevy slgkmpyerf
      601 nnsettehvi qglrlyrpqq aservytimy scwhekaeer ptftallgsi lditdeep
//
LOCUS       XP_053931094             693 aa            linear   VRT 09-MAR-2023
DEFINITION  aryl-hydrocarbon-interacting protein-like 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053931094
VERSION     XP_053931094.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075119.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..693
                     /product="aryl-hydrocarbon-interacting protein-like 1
                     isoform X1"
                     /calculated_mol_wt=77181
     Region          28..>89
                     /region_name="FKBP_C"
                     /note="FKBP-type peptidyl-prolyl cis-trans isomerase;
                     cl19519"
                     /db_xref="CDD:473184"
     Region          169..>380
                     /region_name="3a0801s09"
                     /note="mitochondrial precursor proteins import receptor
                     (72 kDa mitochondrial outermembrane protein)
                     (mitochondrial import receptor for the ADP/ATP carrier)
                     (translocase of outermembrane tom70); TIGR00990"
                     /db_xref="CDD:273380"
     Region          180..224
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(182..183,186..187,189,231,234..235,238..239,
                     241..242,265,268..269,272..273,276)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          229..259
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          264..290
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..693
                     /gene="LOC104069050"
                     /coded_by="XM_054075119.1:313..2394"
                     /db_xref="GeneID:104069050"
ORIGIN      
        1 meetyllnve gvrkkilhgg qgelpkfqdg skitfhfqtl kddfertvid dsreagipme
       61 iivgkmfkle iwetllrsmr agevaefwcd aihtgmyalv srgmrriaeg rdplegqkhr
      121 cgmgnmfdyh stgyddldel qrtpqplifi melfrveeps aykrdtwams keeklaavpi
      181 lhsegnrlvl rkefaqaaak yqeaviclrn lqakekpwed gwlklenlvt plvlnycqcq
      241 lelgeyyevl ehttellqkh ndnakayfkr akahaavwne rearedfmrv ahldpsmaaa
      301 vkkelkqlge rmrkkhvedr kryqglfqpa rgprasggqe sgevgdraml qeevpqgeag
      361 vlespgqgae qpaadkgpsg arceeaepga eaaqgqpaek evevrdgtel geetnlgtcr
      421 aepesggaer gsekeeekkk ieeekveeed ekkekvveae eeeevkeeyk kkekeveeed
      481 ekeekveevk eeyekrekee veeeekkkee eeekeeekee kspavvtekl avgqgleega
      541 ggaegdgpgt raraepgtap epgppseelg egdpeledet prevleegth edqqaggsrg
      601 daeegsmkpd nftsrsvlqa ghlgpdeelg rdaevppgpt avregadapp gqcnesrele
      661 aitlghgqls ldggkagepl mrrhskgnga aas
//
LOCUS       XP_053931095             687 aa            linear   VRT 09-MAR-2023
DEFINITION  aryl-hydrocarbon-interacting protein-like 1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053931095
VERSION     XP_053931095.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075120.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..687
                     /product="aryl-hydrocarbon-interacting protein-like 1
                     isoform X2"
                     /calculated_mol_wt=76407
     Region          163..>374
                     /region_name="3a0801s09"
                     /note="mitochondrial precursor proteins import receptor
                     (72 kDa mitochondrial outermembrane protein)
                     (mitochondrial import receptor for the ADP/ATP carrier)
                     (translocase of outermembrane tom70); TIGR00990"
                     /db_xref="CDD:273380"
     Region          174..218
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(176..177,180..181,183,225,228..229,232..233,
                     235..236,259,262..263,266..267,270)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          223..253
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          258..284
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..687
                     /gene="LOC104069050"
                     /coded_by="XM_054075120.1:313..2376"
                     /db_xref="GeneID:104069050"
ORIGIN      
        1 meetyllnve gvrkkilhgg qgelpkfqdg sktlkddfer tviddsreag ipmeiivgkm
       61 fkleiwetll rsmragevae fwcdaihtgm yalvsrgmrr iaegrdpleg qkhrcgmgnm
      121 fdyhstgydd ldelqrtpqp lifimelfrv eepsaykrdt wamskeekla avpilhsegn
      181 rlvlrkefaq aaakyqeavi clrnlqakek pwedgwlkle nlvtplvlny cqcqlelgey
      241 yevlehttel lqkhndnaka yfkrakahaa vwnereared fmrvahldps maaavkkelk
      301 qlgermrkkh vedrkryqgl fqpargpras ggqesgevgd ramlqeevpq geagvlespg
      361 qgaeqpaadk gpsgarceea epgaeaaqgq paekevevrd gtelgeetnl gtcraepesg
      421 gaergsekee ekkkieeekv eeedekkekv veaeeeeevk eeykkkekev eeedekeekv
      481 eevkeeyekr ekeeveeeek kkeeeeekee ekeekspavv teklavgqgl eegaggaegd
      541 gpgtraraep gtapepgpps eelgegdpel edetprevle egthedqqag gsrgdaeegs
      601 mkpdnftsrs vlqaghlgpd eelgrdaevp pgptavrega dappgqcnes releaitlgh
      661 gqlsldggka geplmrrhsk gngaaas
//
LOCUS       XP_053931096             633 aa            linear   VRT 09-MAR-2023
DEFINITION  golgin subfamily A member 6-like protein 6 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053931096
VERSION     XP_053931096.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075121.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..633
                     /product="golgin subfamily A member 6-like protein 6
                     isoform X3"
                     /calculated_mol_wt=70149
     Region          109..>320
                     /region_name="3a0801s09"
                     /note="mitochondrial precursor proteins import receptor
                     (72 kDa mitochondrial outermembrane protein)
                     (mitochondrial import receptor for the ADP/ATP carrier)
                     (translocase of outermembrane tom70); TIGR00990"
                     /db_xref="CDD:273380"
     Region          120..164
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(122..123,126..127,129,171,174..175,178..179,
                     181..182,205,208..209,212..213,216)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          169..199
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          204..230
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..633
                     /gene="LOC104069050"
                     /coded_by="XM_054075121.1:313..2214"
                     /db_xref="GeneID:104069050"
ORIGIN      
        1 meetyllnve gvrkkilhgg qgelpkfqdg skhtgmyalv srgmrriaeg rdplegqkhr
       61 cgmgnmfdyh stgyddldel qrtpqplifi melfrveeps aykrdtwams keeklaavpi
      121 lhsegnrlvl rkefaqaaak yqeaviclrn lqakekpwed gwlklenlvt plvlnycqcq
      181 lelgeyyevl ehttellqkh ndnakayfkr akahaavwne rearedfmrv ahldpsmaaa
      241 vkkelkqlge rmrkkhvedr kryqglfqpa rgprasggqe sgevgdraml qeevpqgeag
      301 vlespgqgae qpaadkgpsg arceeaepga eaaqgqpaek evevrdgtel geetnlgtcr
      361 aepesggaer gsekeeekkk ieeekveeed ekkekvveae eeeevkeeyk kkekeveeed
      421 ekeekveevk eeyekrekee veeeekkkee eeekeeekee kspavvtekl avgqgleega
      481 ggaegdgpgt raraepgtap epgppseelg egdpeledet prevleegth edqqaggsrg
      541 daeegsmkpd nftsrsvlqa ghlgpdeelg rdaevppgpt avregadapp gqcnesrele
      601 aitlghgqls ldggkagepl mrrhskgnga aas
//
LOCUS       XP_009570316             357 aa            linear   VRT 09-MAR-2023
DEFINITION  magnesium transporter NIPA2 [Cuculus canorus].
ACCESSION   XP_009570316
VERSION     XP_009570316.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009572021.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009570316.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..357
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..357
                     /product="magnesium transporter NIPA2"
                     /calculated_mol_wt=38379
     Region          10..302
                     /region_name="EamA"
                     /note="EamA-like transporter family; cl23754"
                     /db_xref="CDD:474045"
     CDS             1..357
                     /gene="LOC104069051"
                     /coded_by="XM_009572021.2:49..1122"
                     /db_xref="GeneID:104069051"
ORIGIN      
        1 mgdagvrpgf yvglglalgs safiggsfil kkkgllrlcr rgraragqgg haylqewlww
       61 agllcmgige aanfaayafa patlvtplga lsvlvsavls svflneqlnv hgkigcilsi
      121 lgstvmviha pqeeevssle smaeklkdpg fivfavcvlv sslllifvag prygqsnvlv
      181 yvlvcsaigs lsvscvkglg ialkelfsgk pvlkeplgwv llvclvicis vqinylnkal
      241 difntsvvtp iyyvlfttav mtcsailfke wqhmvldnii gtvsgfltiv sgifllhafr
      301 dmpftpdllp lflqgradlh tswrsvdrhq scqhqpllps edkgsrsaee eeegesm
//
LOCUS       XP_009570278             353 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription initiation factor TFIID subunit 7-like [Cuculus
            canorus].
ACCESSION   XP_009570278
VERSION     XP_009570278.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009571983.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..353
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..353
                     /product="transcription initiation factor TFIID subunit
                     7-like"
                     /calculated_mol_wt=40581
     Region          12..177
                     /region_name="TAFII55_N"
                     /note="TAFII55 protein conserved region; pfam04658"
                     /db_xref="CDD:461382"
     Region          259..>350
                     /region_name="YhaN"
                     /note="Uncharacterized conserved protein YhaN, contains
                     AAA domain [Function unknown]; COG4717"
                     /db_xref="CDD:443752"
     CDS             1..353
                     /gene="TAF7L"
                     /coded_by="XM_009571983.2:112..1173"
                     /db_xref="GeneID:104069016"
ORIGIN      
        1 mskskddaph elesqfvlrl ppeyastvrr avqsgnvnlk drltielhad grhgivrvdr
       61 vplaaklvdl pciieslkti dkktfyktad icqmlvctvd gdlyppleeq tvstdpkank
      121 kkdkdrekkf iwnhgitlpl knvrkrrfrk takkkyiesp dvekevkrll stdaeavsvr
      181 weviaedetk evdnhgslts ldisspgmsg hkqghgsseh delreifndi ssssededer
      241 dhhddedlni mdteedlerq lqdklnesdg qqqenegsnq ivmgiqkqid nlksklqetq
      301 drrkrqedli mkvenlalkt rlqavldefk qqeerekqqm tslqeqlesl mek
//
LOCUS       XP_053931097             353 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription initiation factor TFIID subunit 7-like [Cuculus
            canorus].
ACCESSION   XP_053931097
VERSION     XP_053931097.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075122.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..353
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..353
                     /product="transcription initiation factor TFIID subunit
                     7-like"
                     /calculated_mol_wt=40581
     Region          12..177
                     /region_name="TAFII55_N"
                     /note="TAFII55 protein conserved region; pfam04658"
                     /db_xref="CDD:461382"
     Region          259..>350
                     /region_name="YhaN"
                     /note="Uncharacterized conserved protein YhaN, contains
                     AAA domain [Function unknown]; COG4717"
                     /db_xref="CDD:443752"
     CDS             1..353
                     /gene="TAF7L"
                     /coded_by="XM_054075122.1:57..1118"
                     /db_xref="GeneID:104069016"
ORIGIN      
        1 mskskddaph elesqfvlrl ppeyastvrr avqsgnvnlk drltielhad grhgivrvdr
       61 vplaaklvdl pciieslkti dkktfyktad icqmlvctvd gdlyppleeq tvstdpkank
      121 kkdkdrekkf iwnhgitlpl knvrkrrfrk takkkyiesp dvekevkrll stdaeavsvr
      181 weviaedetk evdnhgslts ldisspgmsg hkqghgsseh delreifndi ssssededer
      241 dhhddedlni mdteedlerq lqdklnesdg qqqenegsnq ivmgiqkqid nlksklqetq
      301 drrkrqedli mkvenlalkt rlqavldefk qqeerekqqm tslqeqlesl mek
//
LOCUS       XP_053931098              94 aa            linear   VRT 09-MAR-2023
DEFINITION  mitochondrial import inner membrane translocase subunit Tim8 A
            [Cuculus canorus].
ACCESSION   XP_053931098
VERSION     XP_053931098.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075123.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..94
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..94
                     /product="mitochondrial import inner membrane translocase
                     subunit Tim8 A"
                     /calculated_mol_wt=10569
     Region          18..80
                     /region_name="zf-Tim10_DDP"
                     /note="Tim10/DDP family zinc finger; pfam02953"
                     /db_xref="CDD:460764"
     CDS             1..94
                     /gene="TIMM8A"
                     /coded_by="XM_054075123.1:80..364"
                     /db_xref="GeneID:128853104"
ORIGIN      
        1 mdapsaaglg gadpqlqrfi evetqkqrfq qlvhqmtelc wekcmdkpgp kldsraetcf
       61 vncverfidt sqfilnrleq tqksksafse slsd
//
LOCUS       XP_053931100             645 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium- and chloride-dependent neutral and basic amino acid
            transporter B(0+) isoform X1 [Cuculus canorus].
ACCESSION   XP_053931100
VERSION     XP_053931100.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075125.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..645
                     /product="sodium- and chloride-dependent neutral and basic
                     amino acid transporter B(0+) isoform X1"
                     /calculated_mol_wt=72486
     Region          42..643
                     /region_name="SLC6sbd_ATB0"
                     /note="Na(+)- and Cl(-)-dependent beta-alanine transporter
                     ATB0+; solute-binding domain; cd11501"
                     /db_xref="CDD:271391"
     Site            order(57,60,421,424..425)
                     /site_type="other"
                     /note="Na binding site 2 [ion binding]"
                     /db_xref="CDD:271391"
     Site            order(58..59,61..64,138,323..324,329,331,425,428..429)
                     /site_type="other"
                     /note="putative substrate binding site 1 [chemical
                     binding]"
                     /db_xref="CDD:271391"
     Site            order(59,64,324,356)
                     /site_type="other"
                     /note="Na binding site 1 [ion binding]"
                     /db_xref="CDD:271391"
     Site            order(66..67,137,141,144,390,394)
                     /site_type="other"
                     /note="putative substrate binding site 2 [chemical
                     binding]"
                     /db_xref="CDD:271391"
     CDS             1..645
                     /gene="SLC6A14"
                     /coded_by="XM_054075125.1:33..1970"
                     /db_xref="GeneID:104063624"
ORIGIN      
        1 mqkqetdwrf fplppkvneg edfslssekn ahasdsdenl ergnwsnkad yllsmvgyav
       61 glgnvwrfpy ltyqngggaf lipytlmlal aglplffmec slgqfaslgp isiwrilplf
      121 qgvgitmvmi stfvaiyynv iiayalyylf asfqkvlpws ecfswadefc sktrlvsdcn
      181 ttldgeiiha nysfitsnnl tcingtmkyk pvqfpseqyw nkvalqrssg ldetgnivwy
      241 lalclllswv iigaalfkgi kssgkvvyft alfpyvilli llvrgatleg aldgieyyig
      301 kqsnitklme aevwkdaatq ifyslsvawg glvalssynk fhnncysdai ivcvtnclts
      361 vfagfaifsi lghmayvser pvsevvdsgf dlafvaypea lsklpvsplw sflfffmlll
      421 lgldsqfati etltttiqdi ypevmkklrv pvtlglcmll fflglvcvtq agiywvnlid
      481 hfcagwgili aavleiigiv yiyggnrfie diemmigkks clfwlwwrmc wffvtpvllt
      541 ailvwslatf sppfygsvpy ptwgtavgwc misfcviwip iiavlkivka egnlcqrivs
      601 ccrptanwgp ylechrgery shvvdpkkek eheiptvsaf vytqq
//
LOCUS       XP_053931102             640 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium- and chloride-dependent neutral and basic amino acid
            transporter B(0+) isoform X2 [Cuculus canorus].
ACCESSION   XP_053931102
VERSION     XP_053931102.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075127.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..640
                     /product="sodium- and chloride-dependent neutral and basic
                     amino acid transporter B(0+) isoform X2"
                     /calculated_mol_wt=71590
     Region          <16..37
                     /region_name="Ndk"
                     /note="Nucleoside diphosphate kinase [Nucleotide transport
                     and metabolism]; COG0105"
                     /db_xref="CDD:439875"
     Region          37..638
                     /region_name="SLC6sbd_ATB0"
                     /note="Na(+)- and Cl(-)-dependent beta-alanine transporter
                     ATB0+; solute-binding domain; cd11501"
                     /db_xref="CDD:271391"
     Site            order(52,55,416,419..420)
                     /site_type="other"
                     /note="Na binding site 2 [ion binding]"
                     /db_xref="CDD:271391"
     Site            order(53..54,56..59,133,318..319,324,326,420,423..424)
                     /site_type="other"
                     /note="putative substrate binding site 1 [chemical
                     binding]"
                     /db_xref="CDD:271391"
     Site            order(54,59,319,351)
                     /site_type="other"
                     /note="Na binding site 1 [ion binding]"
                     /db_xref="CDD:271391"
     Site            order(61..62,132,136,139,385,389)
                     /site_type="other"
                     /note="putative substrate binding site 2 [chemical
                     binding]"
                     /db_xref="CDD:271391"
     CDS             1..640
                     /gene="SLC6A14"
                     /coded_by="XM_054075127.1:36..1958"
                     /db_xref="GeneID:104063624"
ORIGIN      
        1 mgmlslpgcl scgrkkdfsl sseknahasd sdenlergnw snkadyllsm vgyavglgnv
       61 wrfpyltyqn gggaflipyt lmlalaglpl ffmecslgqf aslgpisiwr ilplfqgvgi
      121 tmvmistfva iyynviiaya lyylfasfqk vlpwsecfsw adefcsktrl vsdcnttldg
      181 eiihanysfi tsnnltcing tmkykpvqfp seqywnkval qrssgldetg nivwylalcl
      241 llswviigaa lfkgikssgk vvyftalfpy villillvrg atlegaldgi eyyigkqsni
      301 tklmeaevwk daatqifysl svawgglval ssynkfhnnc ysdaiivcvt ncltsvfagf
      361 aifsilghma yvserpvsev vdsgfdlafv aypealsklp vsplwsflff fmllllglds
      421 qfatietltt tiqdiypevm kklrvpvtlg lcmllfflgl vcvtqagiyw vnlidhfcag
      481 wgiliaavle iigivyiygg nrfiediemm igkksclfwl wwrmcwffvt pvlltailvw
      541 slatfsppfy gsvpyptwgt avgwcmisfc viwipiiavl kivkaegnlc qrivsccrpt
      601 anwgpylech rgeryshvvd pkkekeheip tvsafvytqq
//
LOCUS       XP_053931103             591 aa            linear   VRT 09-MAR-2023
DEFINITION  sodium- and chloride-dependent neutral and basic amino acid
            transporter B(0+) isoform X3 [Cuculus canorus].
ACCESSION   XP_053931103
VERSION     XP_053931103.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075128.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..591
                     /product="sodium- and chloride-dependent neutral and basic
                     amino acid transporter B(0+) isoform X3"
                     /calculated_mol_wt=66244
     Region          1..589
                     /region_name="SLC6sbd_ATB0"
                     /note="Na(+)- and Cl(-)-dependent beta-alanine transporter
                     ATB0+; solute-binding domain; cd11501"
                     /db_xref="CDD:271391"
     Site            order(3,6,367,370..371)
                     /site_type="other"
                     /note="Na binding site 2 [ion binding]"
                     /db_xref="CDD:271391"
     Site            order(4..5,7..10,84,269..270,275,277,371,374..375)
                     /site_type="other"
                     /note="putative substrate binding site 1 [chemical
                     binding]"
                     /db_xref="CDD:271391"
     Site            order(5,10,270,302)
                     /site_type="other"
                     /note="Na binding site 1 [ion binding]"
                     /db_xref="CDD:271391"
     Site            order(12..13,83,87,90,336,340)
                     /site_type="other"
                     /note="putative substrate binding site 2 [chemical
                     binding]"
                     /db_xref="CDD:271391"
     CDS             1..591
                     /gene="SLC6A14"
                     /coded_by="XM_054075128.1:236..2011"
                     /db_xref="GeneID:104063624"
ORIGIN      
        1 mvgyavglgn vwrfpyltyq ngggaflipy tlmlalaglp lffmecslgq faslgpisiw
       61 rilplfqgvg itmvmistfv aiyynviiay alyylfasfq kvlpwsecfs wadefcsktr
      121 lvsdcnttld geiihanysf itsnnltcin gtmkykpvqf pseqywnkva lqrssgldet
      181 gnivwylalc lllswviiga alfkgikssg kvvyftalfp yvillillvr gatlegaldg
      241 ieyyigkqsn itklmeaevw kdaatqifys lsvawgglva lssynkfhnn cysdaiivcv
      301 tncltsvfag faifsilghm ayvserpvse vvdsgfdlaf vaypealskl pvsplwsflf
      361 ffmllllgld sqfatietlt ttiqdiypev mkklrvpvtl glcmllfflg lvcvtqagiy
      421 wvnlidhfca gwgiliaavl eiigivyiyg gnrfiediem migkksclfw lwwrmcwffv
      481 tpvlltailv wslatfsppf ygsvpyptwg tavgwcmisf cviwipiiav lkivkaegnl
      541 cqrivsccrp tanwgpylec hrgeryshvv dpkkekehei ptvsafvytq q
//
LOCUS       XP_053931104             628 aa            linear   VRT 09-MAR-2023
DEFINITION  plastin-3 [Cuculus canorus].
ACCESSION   XP_053931104
VERSION     XP_053931104.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075129.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..628
                     /product="plastin-3"
                     /calculated_mol_wt=70600
     Region          14..80
                     /region_name="EFh"
                     /note="EF-hand, calcium binding motif; A diverse
                     superfamily of calcium sensors and calcium signal
                     modulators; most examples in this alignment model have 2
                     active canonical EF hands. Ca2+ binding induces a
                     conformational change in the EF-hand motif, leading to...;
                     cd00051"
                     /db_xref="CDD:238008"
     Site            order(23,25,27,34,63,65,67,74)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238008"
     Region          99..243
                     /region_name="CH_PLS_rpt1"
                     /note="first calponin homology (CH) domain found in the
                     plastin family; cd21292"
                     /db_xref="CDD:409141"
     Site            order(123,127,190,192..193,196..197,199,208..216,221,
                     223..224,226..227,230..231,234)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409141"
     Region          252..373
                     /region_name="CH_PLS3_rpt2"
                     /note="second calponin homology (CH) domain found in
                     plastin-3; cd21328"
                     /db_xref="CDD:409177"
     Site            order(267,271,330,332..333,336..337,339,347..355,360,
                     362..363,365..366,369..370,373)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409177"
     Region          375..508
                     /region_name="CH_PLS3_rpt3"
                     /note="third calponin homology (CH) domain found in
                     plastin-3; cd21331"
                     /db_xref="CDD:409180"
     Site            order(397,401,456,458..459,462..463,465,475..483,488,
                     490..491,493..494,497..498,501)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409180"
     Region          517..628
                     /region_name="CH_PLS3_rpt4"
                     /note="fourth calponin homology (CH) domain found in
                     plastin-3; cd21334"
                     /db_xref="CDD:409183"
     Site            order(518,522,579,581..582,585..586,588,596..604,609,
                     611..612,614..615,618..619,622)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409183"
     CDS             1..628
                     /gene="PLS3"
                     /coded_by="XM_054075129.1:155..2041"
                     /db_xref="GeneID:104063636"
ORIGIN      
        1 mantmqiskd eleelkeafa kvdlnsngfi cdyelhelfk eanlplpgyk vreiiqklmi
       61 dgdknkdgki sfeefvyifq evkssdiakt frkainrkeg icaiggtsel ssegtqhsys
      121 eeekyafvnw inkalendpd crhvvpmnpn tddlfkavgd givlckminl svpdtidera
      181 inkkkltpfi iqenlnlaln sasaigchvv nigaedlreg kphlvlgllw qiikiglfad
      241 ielsrneala allrdgenle dlmklspeel llrwanfhle nagwhkinnf ssdikdsray
      301 fhllnqiapk gqkegepqid inmsgfnekd dlrraeymlq qadrlgcrqf vtpadvvsgn
      361 pklnlafvan lfnkypaltk penqdidwtl legetreert frnwmnslgv nphvnhlygd
      421 lqdalvilql yekikvpvdw nkvnkppypk lganmkklen cnyavdlgkh pakfslvgig
      481 gqdlndgnpt ltlalvwqlm rrytlnvled lgdgqkandd iivswvnqtl keagkstsiq
      541 nfkdktists lavvdlidai qpgcinydlv ktgnlseddk qnnakyavsm arrigarvya
      601 lpedlvevkp kmvmtvfacl mgrgmkrv
//
LOCUS       XP_053931105             628 aa            linear   VRT 09-MAR-2023
DEFINITION  plastin-3 [Cuculus canorus].
ACCESSION   XP_053931105
VERSION     XP_053931105.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075130.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..628
                     /product="plastin-3"
                     /calculated_mol_wt=70600
     Region          14..80
                     /region_name="EFh"
                     /note="EF-hand, calcium binding motif; A diverse
                     superfamily of calcium sensors and calcium signal
                     modulators; most examples in this alignment model have 2
                     active canonical EF hands. Ca2+ binding induces a
                     conformational change in the EF-hand motif, leading to...;
                     cd00051"
                     /db_xref="CDD:238008"
     Site            order(23,25,27,34,63,65,67,74)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238008"
     Region          99..243
                     /region_name="CH_PLS_rpt1"
                     /note="first calponin homology (CH) domain found in the
                     plastin family; cd21292"
                     /db_xref="CDD:409141"
     Site            order(123,127,190,192..193,196..197,199,208..216,221,
                     223..224,226..227,230..231,234)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409141"
     Region          252..373
                     /region_name="CH_PLS3_rpt2"
                     /note="second calponin homology (CH) domain found in
                     plastin-3; cd21328"
                     /db_xref="CDD:409177"
     Site            order(267,271,330,332..333,336..337,339,347..355,360,
                     362..363,365..366,369..370,373)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409177"
     Region          375..508
                     /region_name="CH_PLS3_rpt3"
                     /note="third calponin homology (CH) domain found in
                     plastin-3; cd21331"
                     /db_xref="CDD:409180"
     Site            order(397,401,456,458..459,462..463,465,475..483,488,
                     490..491,493..494,497..498,501)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409180"
     Region          517..628
                     /region_name="CH_PLS3_rpt4"
                     /note="fourth calponin homology (CH) domain found in
                     plastin-3; cd21334"
                     /db_xref="CDD:409183"
     Site            order(518,522,579,581..582,585..586,588,596..604,609,
                     611..612,614..615,618..619,622)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409183"
     CDS             1..628
                     /gene="PLS3"
                     /coded_by="XM_054075130.1:108..1994"
                     /db_xref="GeneID:104063636"
ORIGIN      
        1 mantmqiskd eleelkeafa kvdlnsngfi cdyelhelfk eanlplpgyk vreiiqklmi
       61 dgdknkdgki sfeefvyifq evkssdiakt frkainrkeg icaiggtsel ssegtqhsys
      121 eeekyafvnw inkalendpd crhvvpmnpn tddlfkavgd givlckminl svpdtidera
      181 inkkkltpfi iqenlnlaln sasaigchvv nigaedlreg kphlvlgllw qiikiglfad
      241 ielsrneala allrdgenle dlmklspeel llrwanfhle nagwhkinnf ssdikdsray
      301 fhllnqiapk gqkegepqid inmsgfnekd dlrraeymlq qadrlgcrqf vtpadvvsgn
      361 pklnlafvan lfnkypaltk penqdidwtl legetreert frnwmnslgv nphvnhlygd
      421 lqdalvilql yekikvpvdw nkvnkppypk lganmkklen cnyavdlgkh pakfslvgig
      481 gqdlndgnpt ltlalvwqlm rrytlnvled lgdgqkandd iivswvnqtl keagkstsiq
      541 nfkdktists lavvdlidai qpgcinydlv ktgnlseddk qnnakyavsm arrigarvya
      601 lpedlvevkp kmvmtvfacl mgrgmkrv
//
LOCUS       XP_053931106             628 aa            linear   VRT 09-MAR-2023
DEFINITION  plastin-3 [Cuculus canorus].
ACCESSION   XP_053931106
VERSION     XP_053931106.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075131.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..628
                     /product="plastin-3"
                     /calculated_mol_wt=70600
     Region          14..80
                     /region_name="EFh"
                     /note="EF-hand, calcium binding motif; A diverse
                     superfamily of calcium sensors and calcium signal
                     modulators; most examples in this alignment model have 2
                     active canonical EF hands. Ca2+ binding induces a
                     conformational change in the EF-hand motif, leading to...;
                     cd00051"
                     /db_xref="CDD:238008"
     Site            order(23,25,27,34,63,65,67,74)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238008"
     Region          99..243
                     /region_name="CH_PLS_rpt1"
                     /note="first calponin homology (CH) domain found in the
                     plastin family; cd21292"
                     /db_xref="CDD:409141"
     Site            order(123,127,190,192..193,196..197,199,208..216,221,
                     223..224,226..227,230..231,234)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409141"
     Region          252..373
                     /region_name="CH_PLS3_rpt2"
                     /note="second calponin homology (CH) domain found in
                     plastin-3; cd21328"
                     /db_xref="CDD:409177"
     Site            order(267,271,330,332..333,336..337,339,347..355,360,
                     362..363,365..366,369..370,373)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409177"
     Region          375..508
                     /region_name="CH_PLS3_rpt3"
                     /note="third calponin homology (CH) domain found in
                     plastin-3; cd21331"
                     /db_xref="CDD:409180"
     Site            order(397,401,456,458..459,462..463,465,475..483,488,
                     490..491,493..494,497..498,501)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409180"
     Region          517..628
                     /region_name="CH_PLS3_rpt4"
                     /note="fourth calponin homology (CH) domain found in
                     plastin-3; cd21334"
                     /db_xref="CDD:409183"
     Site            order(518,522,579,581..582,585..586,588,596..604,609,
                     611..612,614..615,618..619,622)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409183"
     CDS             1..628
                     /gene="PLS3"
                     /coded_by="XM_054075131.1:177..2063"
                     /db_xref="GeneID:104063636"
ORIGIN      
        1 mantmqiskd eleelkeafa kvdlnsngfi cdyelhelfk eanlplpgyk vreiiqklmi
       61 dgdknkdgki sfeefvyifq evkssdiakt frkainrkeg icaiggtsel ssegtqhsys
      121 eeekyafvnw inkalendpd crhvvpmnpn tddlfkavgd givlckminl svpdtidera
      181 inkkkltpfi iqenlnlaln sasaigchvv nigaedlreg kphlvlgllw qiikiglfad
      241 ielsrneala allrdgenle dlmklspeel llrwanfhle nagwhkinnf ssdikdsray
      301 fhllnqiapk gqkegepqid inmsgfnekd dlrraeymlq qadrlgcrqf vtpadvvsgn
      361 pklnlafvan lfnkypaltk penqdidwtl legetreert frnwmnslgv nphvnhlygd
      421 lqdalvilql yekikvpvdw nkvnkppypk lganmkklen cnyavdlgkh pakfslvgig
      481 gqdlndgnpt ltlalvwqlm rrytlnvled lgdgqkandd iivswvnqtl keagkstsiq
      541 nfkdktists lavvdlidai qpgcinydlv ktgnlseddk qnnakyavsm arrigarvya
      601 lpedlvevkp kmvmtvfacl mgrgmkrv
//
LOCUS       XP_053931107             628 aa            linear   VRT 09-MAR-2023
DEFINITION  plastin-3 [Cuculus canorus].
ACCESSION   XP_053931107
VERSION     XP_053931107.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075132.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..628
                     /product="plastin-3"
                     /calculated_mol_wt=70600
     Region          14..80
                     /region_name="EFh"
                     /note="EF-hand, calcium binding motif; A diverse
                     superfamily of calcium sensors and calcium signal
                     modulators; most examples in this alignment model have 2
                     active canonical EF hands. Ca2+ binding induces a
                     conformational change in the EF-hand motif, leading to...;
                     cd00051"
                     /db_xref="CDD:238008"
     Site            order(23,25,27,34,63,65,67,74)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238008"
     Region          99..243
                     /region_name="CH_PLS_rpt1"
                     /note="first calponin homology (CH) domain found in the
                     plastin family; cd21292"
                     /db_xref="CDD:409141"
     Site            order(123,127,190,192..193,196..197,199,208..216,221,
                     223..224,226..227,230..231,234)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409141"
     Region          252..373
                     /region_name="CH_PLS3_rpt2"
                     /note="second calponin homology (CH) domain found in
                     plastin-3; cd21328"
                     /db_xref="CDD:409177"
     Site            order(267,271,330,332..333,336..337,339,347..355,360,
                     362..363,365..366,369..370,373)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409177"
     Region          375..508
                     /region_name="CH_PLS3_rpt3"
                     /note="third calponin homology (CH) domain found in
                     plastin-3; cd21331"
                     /db_xref="CDD:409180"
     Site            order(397,401,456,458..459,462..463,465,475..483,488,
                     490..491,493..494,497..498,501)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409180"
     Region          517..628
                     /region_name="CH_PLS3_rpt4"
                     /note="fourth calponin homology (CH) domain found in
                     plastin-3; cd21334"
                     /db_xref="CDD:409183"
     Site            order(518,522,579,581..582,585..586,588,596..604,609,
                     611..612,614..615,618..619,622)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409183"
     CDS             1..628
                     /gene="PLS3"
                     /coded_by="XM_054075132.1:167..2053"
                     /db_xref="GeneID:104063636"
ORIGIN      
        1 mantmqiskd eleelkeafa kvdlnsngfi cdyelhelfk eanlplpgyk vreiiqklmi
       61 dgdknkdgki sfeefvyifq evkssdiakt frkainrkeg icaiggtsel ssegtqhsys
      121 eeekyafvnw inkalendpd crhvvpmnpn tddlfkavgd givlckminl svpdtidera
      181 inkkkltpfi iqenlnlaln sasaigchvv nigaedlreg kphlvlgllw qiikiglfad
      241 ielsrneala allrdgenle dlmklspeel llrwanfhle nagwhkinnf ssdikdsray
      301 fhllnqiapk gqkegepqid inmsgfnekd dlrraeymlq qadrlgcrqf vtpadvvsgn
      361 pklnlafvan lfnkypaltk penqdidwtl legetreert frnwmnslgv nphvnhlygd
      421 lqdalvilql yekikvpvdw nkvnkppypk lganmkklen cnyavdlgkh pakfslvgig
      481 gqdlndgnpt ltlalvwqlm rrytlnvled lgdgqkandd iivswvnqtl keagkstsiq
      541 nfkdktists lavvdlidai qpgcinydlv ktgnlseddk qnnakyavsm arrigarvya
      601 lpedlvevkp kmvmtvfacl mgrgmkrv
//
LOCUS       XP_053931108             628 aa            linear   VRT 09-MAR-2023
DEFINITION  plastin-3 [Cuculus canorus].
ACCESSION   XP_053931108
VERSION     XP_053931108.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075133.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..628
                     /product="plastin-3"
                     /calculated_mol_wt=70600
     Region          14..80
                     /region_name="EFh"
                     /note="EF-hand, calcium binding motif; A diverse
                     superfamily of calcium sensors and calcium signal
                     modulators; most examples in this alignment model have 2
                     active canonical EF hands. Ca2+ binding induces a
                     conformational change in the EF-hand motif, leading to...;
                     cd00051"
                     /db_xref="CDD:238008"
     Site            order(23,25,27,34,63,65,67,74)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238008"
     Region          99..243
                     /region_name="CH_PLS_rpt1"
                     /note="first calponin homology (CH) domain found in the
                     plastin family; cd21292"
                     /db_xref="CDD:409141"
     Site            order(123,127,190,192..193,196..197,199,208..216,221,
                     223..224,226..227,230..231,234)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409141"
     Region          252..373
                     /region_name="CH_PLS3_rpt2"
                     /note="second calponin homology (CH) domain found in
                     plastin-3; cd21328"
                     /db_xref="CDD:409177"
     Site            order(267,271,330,332..333,336..337,339,347..355,360,
                     362..363,365..366,369..370,373)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409177"
     Region          375..508
                     /region_name="CH_PLS3_rpt3"
                     /note="third calponin homology (CH) domain found in
                     plastin-3; cd21331"
                     /db_xref="CDD:409180"
     Site            order(397,401,456,458..459,462..463,465,475..483,488,
                     490..491,493..494,497..498,501)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409180"
     Region          517..628
                     /region_name="CH_PLS3_rpt4"
                     /note="fourth calponin homology (CH) domain found in
                     plastin-3; cd21334"
                     /db_xref="CDD:409183"
     Site            order(518,522,579,581..582,585..586,588,596..604,609,
                     611..612,614..615,618..619,622)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409183"
     CDS             1..628
                     /gene="PLS3"
                     /coded_by="XM_054075133.1:67..1953"
                     /db_xref="GeneID:104063636"
ORIGIN      
        1 mantmqiskd eleelkeafa kvdlnsngfi cdyelhelfk eanlplpgyk vreiiqklmi
       61 dgdknkdgki sfeefvyifq evkssdiakt frkainrkeg icaiggtsel ssegtqhsys
      121 eeekyafvnw inkalendpd crhvvpmnpn tddlfkavgd givlckminl svpdtidera
      181 inkkkltpfi iqenlnlaln sasaigchvv nigaedlreg kphlvlgllw qiikiglfad
      241 ielsrneala allrdgenle dlmklspeel llrwanfhle nagwhkinnf ssdikdsray
      301 fhllnqiapk gqkegepqid inmsgfnekd dlrraeymlq qadrlgcrqf vtpadvvsgn
      361 pklnlafvan lfnkypaltk penqdidwtl legetreert frnwmnslgv nphvnhlygd
      421 lqdalvilql yekikvpvdw nkvnkppypk lganmkklen cnyavdlgkh pakfslvgig
      481 gqdlndgnpt ltlalvwqlm rrytlnvled lgdgqkandd iivswvnqtl keagkstsiq
      541 nfkdktists lavvdlidai qpgcinydlv ktgnlseddk qnnakyavsm arrigarvya
      601 lpedlvevkp kmvmtvfacl mgrgmkrv
//
LOCUS       XP_053931109             474 aa            linear   VRT 09-MAR-2023
DEFINITION  nyctalopin-like [Cuculus canorus].
ACCESSION   XP_053931109
VERSION     XP_053931109.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075134.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..474
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..474
                     /product="nyctalopin-like"
                     /calculated_mol_wt=53455
     Region          76..95
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          96..119
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          97..>368
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          120..143
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          144..168
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          169..192
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          193..215
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          216..239
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          240..263
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          264..287
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          340..>408
                     /region_name="PCC"
                     /note="polycystin cation channel protein; TIGR00864"
                     /db_xref="CDD:188093"
     Region          359..371
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     CDS             1..474
                     /gene="LOC104063726"
                     /coded_by="XM_054075134.1:647..2071"
                     /db_xref="GeneID:104063726"
ORIGIN      
        1 mlftagrhli gfylpkdlip iglrqeepan lfslctkspa qptsqcsrft ypkakpglsl
       61 nisdscpsmc kcgpeeiihc nraglralpg eiaastvsln lsnnylrilt tntfrnltfl
      121 htlwldgnnl tflspgtfha lsklrelhls rnsrltylha ntfrgllnli sldlshcnif
      181 eihpllfshl pslerldlgs nnmryvpqaf rnlssltrls lednhieaig rdslkdletl
      241 ydlnlrknri wiiqngaftk lprlsmlnlg hnfiadlpnq lfdgliqlkt mhleanrita
      301 vscsfrhlln lrnlylnnnq issisdsafs ylnklhflhl sknnlsslpm hlfaelpklk
      361 yvflshnpwk cdckmlwflr wtavrrgvie glhcafpgph nttalniprs gdltdcavpp
      421 eltsedkcvv agvsvapapp alpsrvillt lvchtwyfam gwdafmvtfw qcln
//
LOCUS       XP_053931110             372 aa            linear   VRT 09-MAR-2023
DEFINITION  type-2 angiotensin II receptor [Cuculus canorus].
ACCESSION   XP_053931110
VERSION     XP_053931110.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075135.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..372
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..372
                     /product="type-2 angiotensin II receptor"
                     /calculated_mol_wt=42143
     Region          46..329
                     /region_name="7tmA_AT2R"
                     /note="type 2 angiotensin II receptor, member of the class
                     A family of seven-transmembrane G protein-coupled
                     receptors; cd15191"
                     /db_xref="CDD:341341"
     Region          46..72
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:341341"
     Site            order(51,100,103..104,108,121,124..125,128,178,182,197,
                     269,272,304,308)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:341341"
     Region          79..104
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:341341"
     Region          117..147
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:341341"
     Region          158..182
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:341341"
     Region          208..237
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:341341"
     Region          249..279
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:341341"
     Region          297..322
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:341341"
     CDS             1..372
                     /gene="AGTR2"
                     /coded_by="XM_054075135.1:292..1410"
                     /db_xref="GeneID:104063716"
ORIGIN      
        1 mqsnyslvvt trealqvlyt altnssaalr lpppcpltss dyqfslipal fsvifvlglv
       61 gnsvvvvvlc rhsgpktvan iyifnlavad llclatlpfw atyysqrynw lfgslmckis
      121 ssvlclnmfa siffitcmsv dryhaivhpi rsqrrtpqqa yfialivwgl aclsslptfy
      181 frdthyvesl gvnacimafp henyakwsva taflknalgf fipltvittc yiwirrhllk
      241 aqefgknkqk rdkvlklvaa vvvafliswl lfhiltflda larmniinnc dvtgiidatl
      301 pfgicmafan scinpflycf ignqfqeklh hlfkrrvyqf nsyqessslr kgscfrdaet
      361 plgrerrpdf ll
//
LOCUS       XP_009564265             372 aa            linear   VRT 09-MAR-2023
DEFINITION  type-2 angiotensin II receptor [Cuculus canorus].
ACCESSION   XP_009564265
VERSION     XP_009564265.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565970.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564265.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..372
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..372
                     /product="type-2 angiotensin II receptor"
                     /calculated_mol_wt=42143
     Region          46..329
                     /region_name="7tmA_AT2R"
                     /note="type 2 angiotensin II receptor, member of the class
                     A family of seven-transmembrane G protein-coupled
                     receptors; cd15191"
                     /db_xref="CDD:341341"
     Region          46..72
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:341341"
     Site            order(51,100,103..104,108,121,124..125,128,178,182,197,
                     269,272,304,308)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:341341"
     Region          79..104
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:341341"
     Region          117..147
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:341341"
     Region          158..182
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:341341"
     Region          208..237
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:341341"
     Region          249..279
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:341341"
     Region          297..322
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:341341"
     CDS             1..372
                     /gene="AGTR2"
                     /coded_by="XM_009565970.2:208..1326"
                     /db_xref="GeneID:104063716"
ORIGIN      
        1 mqsnyslvvt trealqvlyt altnssaalr lpppcpltss dyqfslipal fsvifvlglv
       61 gnsvvvvvlc rhsgpktvan iyifnlavad llclatlpfw atyysqrynw lfgslmckis
      121 ssvlclnmfa siffitcmsv dryhaivhpi rsqrrtpqqa yfialivwgl aclsslptfy
      181 frdthyvesl gvnacimafp henyakwsva taflknalgf fipltvittc yiwirrhllk
      241 aqefgknkqk rdkvlklvaa vvvafliswl lfhiltflda larmniinnc dvtgiidatl
      301 pfgicmafan scinpflycf ignqfqeklh hlfkrrvyqf nsyqessslr kgscfrdaet
      361 plgrerrpdf ll
//
LOCUS       XP_053931112             426 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853107 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931112
VERSION     XP_053931112.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075137.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..426
                     /product="uncharacterized protein LOC128853107 isoform X1"
                     /calculated_mol_wt=47395
     Region          31..106
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          38..42
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409430"
     Region          50..55
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409430"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409430"
     Region          141..215
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          144..148
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          158..162
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          181..185
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          195..200
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..426
                     /gene="LOC128853107"
                     /coded_by="XM_054075137.1:400..1680"
                     /db_xref="GeneID:128853107"
ORIGIN      
        1 mltqlqaait gylllilqvs famveitekr yavegssilm hapdiknisf iqweylspts
       61 salilqhyad sqsltiypay qgrvtfyqkn gsillqglee tdsgtykatv dlmqdkartt
      121 llkvikpvpq pelqctsnla gspielvclv pegvevfsis wkkdgrplpa ekcyllseni
      181 tvlwirngek sdcgtyscni snmiswkeat lnlmvtgltp plhhaqrlvi valmfttvsa
      241 isfiiqlfhr feearkpiil fahgflciss llllaasiiw mleegfsaaf illalfclvg
      301 vigstevaaa avrpespryc kieiwhkvsq nstapttliv nllfttlllh nvqklhergc
      361 seavhltasc gfaavaifiv llllllwyhr nkpkekmtni trftqstqdt tspvleetrg
      421 qkqeee
//
LOCUS       XP_053931113             426 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853107 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931113
VERSION     XP_053931113.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075138.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..426
                     /product="uncharacterized protein LOC128853107 isoform X1"
                     /calculated_mol_wt=47395
     Region          31..106
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          38..42
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409430"
     Region          50..55
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409430"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409430"
     Region          141..215
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          144..148
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          158..162
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          181..185
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          195..200
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..426
                     /gene="LOC128853107"
                     /coded_by="XM_054075138.1:380..1660"
                     /db_xref="GeneID:128853107"
ORIGIN      
        1 mltqlqaait gylllilqvs famveitekr yavegssilm hapdiknisf iqweylspts
       61 salilqhyad sqsltiypay qgrvtfyqkn gsillqglee tdsgtykatv dlmqdkartt
      121 llkvikpvpq pelqctsnla gspielvclv pegvevfsis wkkdgrplpa ekcyllseni
      181 tvlwirngek sdcgtyscni snmiswkeat lnlmvtgltp plhhaqrlvi valmfttvsa
      241 isfiiqlfhr feearkpiil fahgflciss llllaasiiw mleegfsaaf illalfclvg
      301 vigstevaaa avrpespryc kieiwhkvsq nstapttliv nllfttlllh nvqklhergc
      361 seavhltasc gfaavaifiv llllllwyhr nkpkekmtni trftqstqdt tspvleetrg
      421 qkqeee
//
LOCUS       XP_053931114             426 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853107 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931114
VERSION     XP_053931114.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075139.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..426
                     /product="uncharacterized protein LOC128853107 isoform X1"
                     /calculated_mol_wt=47395
     Region          31..106
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          38..42
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409430"
     Region          50..55
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409430"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409430"
     Region          141..215
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          144..148
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          158..162
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          181..185
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          195..200
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..426
                     /gene="LOC128853107"
                     /coded_by="XM_054075139.1:309..1589"
                     /db_xref="GeneID:128853107"
ORIGIN      
        1 mltqlqaait gylllilqvs famveitekr yavegssilm hapdiknisf iqweylspts
       61 salilqhyad sqsltiypay qgrvtfyqkn gsillqglee tdsgtykatv dlmqdkartt
      121 llkvikpvpq pelqctsnla gspielvclv pegvevfsis wkkdgrplpa ekcyllseni
      181 tvlwirngek sdcgtyscni snmiswkeat lnlmvtgltp plhhaqrlvi valmfttvsa
      241 isfiiqlfhr feearkpiil fahgflciss llllaasiiw mleegfsaaf illalfclvg
      301 vigstevaaa avrpespryc kieiwhkvsq nstapttliv nllfttlllh nvqklhergc
      361 seavhltasc gfaavaifiv llllllwyhr nkpkekmtni trftqstqdt tspvleetrg
      421 qkqeee
//
LOCUS       XP_053931115             425 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853107 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931115
VERSION     XP_053931115.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075140.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..425
                     /product="uncharacterized protein LOC128853107 isoform X2"
                     /calculated_mol_wt=47265
     Region          31..106
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          38..42
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409430"
     Region          50..55
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409430"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409430"
     Region          141..215
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          144..148
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          158..162
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          181..185
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          195..200
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..425
                     /gene="LOC128853107"
                     /coded_by="XM_054075140.1:400..1677"
                     /db_xref="GeneID:128853107"
ORIGIN      
        1 mltqlqaait gylllilqvs famveitekr yavegssilm hapdiknisf iqweylspts
       61 salilqhyad sqsltiypay qgrvtfyqkn gsillqglee tdsgtykatv dlmqdkartt
      121 llkvikpvpq pelqctsnla gspielvclv pegvevfsis wkkdgrplpa ekcyllseni
      181 tvlwirngek sdcgtyscni snmiswkeat lnlmvtgltp plhhaqrlvi valmfttvsa
      241 isfiiqlfhr fearkpiilf ahgflcissl lllaasiiwm leegfsaafi llalfclvgv
      301 igstevaaaa vrpespryck ieiwhkvsqn stapttlivn llfttlllhn vqklhergcs
      361 eavhltascg faavaifivl lllllwyhrn kpkekmtnit rftqstqdtt spvleetrgq
      421 kqeee
//
LOCUS       XP_053931116             411 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853107 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931116
VERSION     XP_053931116.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075141.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..411
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..411
                     /product="uncharacterized protein LOC128853107 isoform X3"
                     /calculated_mol_wt=45818
     Region          31..106
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          38..42
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409430"
     Region          50..55
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409430"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409430"
     Region          129..200
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          129..133
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          143..147
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          166..170
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          180..185
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..411
                     /gene="LOC128853107"
                     /coded_by="XM_054075141.1:400..1635"
                     /db_xref="GeneID:128853107"
ORIGIN      
        1 mltqlqaait gylllilqvs famveitekr yavegssilm hapdiknisf iqweylspts
       61 salilqhyad sqsltiypay qgrvtfyqkn gsillqglee tdsgtykatv dlmqdkartt
      121 llkvisspie lvclvpegve vfsiswkkdg rplpaekcyl lsenitvlwi rngeksdcgt
      181 yscnisnmis wkeatlnlmv tgltpplhha qrlvivalmf ttvsaisfii qlfhrfeear
      241 kpiilfahgf lcisslllla asiiwmleeg fsaafillal fclvgvigst evaaaavrpe
      301 spryckieiw hkvsqnstap ttlivnllft tlllhnvqkl hergcseavh ltascgfaav
      361 aifivlllll lwyhrnkpke kmtnitrftq stqdttspvl eetrgqkqee e
//
LOCUS       XP_053931117             404 aa            linear   VRT 09-MAR-2023
DEFINITION  SLAM family member 5-like isoform X4 [Cuculus canorus].
ACCESSION   XP_053931117
VERSION     XP_053931117.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075142.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..404
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..404
                     /product="SLAM family member 5-like isoform X4"
                     /calculated_mol_wt=45005
     Region          9..84
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          16..20
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409430"
     Region          28..33
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409430"
     Region          69..73
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409430"
     Region          119..193
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          122..126
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:143207"
     Region          136..140
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:143207"
     Region          159..163
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:143207"
     Region          173..178
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:143207"
     Region          186..189
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:143207"
     CDS             1..404
                     /gene="LOC128853107"
                     /coded_by="XM_054075142.1:147..1361"
                     /db_xref="GeneID:128853107"
ORIGIN      
        1 mveitekrya vegssilmha pdiknisfiq weylsptssa lilqhyadsq sltiypayqg
       61 rvtfyqkngs illqgleetd sgtykatvdl mqdkarttll kvikpvpqpe lqctsnlags
      121 pielvclvpe gvevfsiswk kdgrplpaek cyllsenitv lwirngeksd cgtyscnisn
      181 miswkeatln lmvtgltppl hhaqrlviva lmfttvsais fiiqlfhrfe earkpiilfa
      241 hgflcissll llaasiiwml eegfsaafil lalfclvgvi gstevaaaav rpesprycki
      301 eiwhkvsqns tapttlivnl lfttlllhnv qklhergcse avhltascgf aavaifivll
      361 llllwyhrnk pkekmtnitr ftqstqdtts pvleetrgqk qeee
//
LOCUS       XP_053931118             395 aa            linear   VRT 09-MAR-2023
DEFINITION  SLAM family member 5-like isoform X5 [Cuculus canorus].
ACCESSION   XP_053931118
VERSION     XP_053931118.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075143.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..395
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..395
                     /product="SLAM family member 5-like isoform X5"
                     /calculated_mol_wt=44047
     Region          31..106
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          38..42
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409430"
     Region          50..55
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409430"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409430"
     Region          141..215
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          144..148
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          158..162
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          181..185
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          195..200
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..395
                     /gene="LOC128853107"
                     /coded_by="XM_054075143.1:400..1587"
                     /db_xref="GeneID:128853107"
ORIGIN      
        1 mltqlqaait gylllilqvs famveitekr yavegssilm hapdiknisf iqweylspts
       61 salilqhyad sqsltiypay qgrvtfyqkn gsillqglee tdsgtykatv dlmqdkartt
      121 llkvikpvpq pelqctsnla gspielvclv pegvevfsis wkkdgrplpa ekcyllseni
      181 tvlwirngek sdcgtyscni snmiswkeat lnlmvtgltp plhhaqrlvi valmfttvsa
      241 isfiiqlfhr feearkpiil fahgflciss llllaasiiw mleegfsaaf illalfclvg
      301 vigstevaaa avrpespryc kieiwhkvsq nstapttliv nllfttlllh nvqklhdhrn
      361 kpkekmtnit rftqstqdtt spvleetrgq kqeee
//
LOCUS       XP_053931119             393 aa            linear   VRT 09-MAR-2023
DEFINITION  SLAM family member 5-like isoform X6 [Cuculus canorus].
ACCESSION   XP_053931119
VERSION     XP_053931119.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075144.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..393
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..393
                     /product="SLAM family member 5-like isoform X6"
                     /calculated_mol_wt=43684
     Region          31..106
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          38..42
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409430"
     Region          50..55
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409430"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409430"
     Region          141..215
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          144..148
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:143207"
     Region          158..162
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:143207"
     Region          181..185
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:143207"
     Region          195..200
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:143207"
     Region          208..211
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:143207"
     CDS             1..393
                     /gene="LOC128853107"
                     /coded_by="XM_054075144.1:399..1580"
                     /db_xref="GeneID:128853107"
ORIGIN      
        1 mltqlqaait gylllilqvs famveitekr yavegssilm hapdiknisf iqweylspts
       61 salilqhyad sqsltiypay qgrvtfyqkn gsillqglee tdsgtykatv dlmqdkartt
      121 llkvikpvpq pelqctsnla gspielvclv pegvevfsis wkkdgrplpa ekcyllseni
      181 tvlwirngek sdcgtyscni snmiswkeat lnlmvtgltp plhhaqrlvi valmfttvsa
      241 isfiiqlfhr fgfsaafill alfclvgvig stevaaaavr pespryckie iwhkvsqnst
      301 apttlivnll fttlllhnvq klhergcsea vhltascgfa avaifivlll lllwyhrnkp
      361 kekmtnitrf tqstqdttsp vleetrgqkq eee
//
LOCUS       XP_053931121             386 aa            linear   VRT 09-MAR-2023
DEFINITION  SLAM family member 5-like isoform X7 [Cuculus canorus].
ACCESSION   XP_053931121
VERSION     XP_053931121.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075146.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..386
                     /product="SLAM family member 5-like isoform X7"
                     /calculated_mol_wt=43099
     Region          31..106
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          38..42
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409430"
     Region          50..55
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409430"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409430"
     Region          141..215
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          144..148
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          158..162
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          181..185
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          195..200
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..386
                     /gene="LOC128853107"
                     /coded_by="XM_054075146.1:400..1560"
                     /db_xref="GeneID:128853107"
ORIGIN      
        1 mltqlqaait gylllilqvs famveitekr yavegssilm hapdiknisf iqweylspts
       61 salilqhyad sqsltiypay qgrvtfyqkn gsillqglee tdsgtykatv dlmqdkartt
      121 llkvikpvpq pelqctsnla gspielvclv pegvevfsis wkkdgrplpa ekcyllseni
      181 tvlwirngek sdcgtyscni snmiswkeat lnlmvtgltp plhhaqrlvi valmfttvsa
      241 isfiiqlfhr feearkpiil fahgflciss llllaasiiw mleeghkvsq nstapttliv
      301 nllfttlllh nvqklhergc seavhltasc gfaavaifiv llllllwyhr nkpkekmtni
      361 trftqstqdt tspvleetrg qkqeee
//
LOCUS       XP_053931122             385 aa            linear   VRT 09-MAR-2023
DEFINITION  SLAM family member 5-like isoform X8 [Cuculus canorus].
ACCESSION   XP_053931122
VERSION     XP_053931122.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075147.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..385
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..385
                     /product="SLAM family member 5-like isoform X8"
                     /calculated_mol_wt=42970
     Region          31..106
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          38..42
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409430"
     Region          50..55
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409430"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409430"
     Region          141..215
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          144..148
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:143207"
     Region          158..162
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:143207"
     Region          181..185
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:143207"
     Region          195..200
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:143207"
     Region          208..211
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:143207"
     CDS             1..385
                     /gene="LOC128853107"
                     /coded_by="XM_054075147.1:400..1557"
                     /db_xref="GeneID:128853107"
ORIGIN      
        1 mltqlqaait gylllilqvs famveitekr yavegssilm hapdiknisf iqweylspts
       61 salilqhyad sqsltiypay qgrvtfyqkn gsillqglee tdsgtykatv dlmqdkartt
      121 llkvikpvpq pelqctsnla gspielvclv pegvevfsis wkkdgrplpa ekcyllseni
      181 tvlwirngek sdcgtyscni snmiswkeat lnlmvtgltp plhhaqrlvi valmfttvsa
      241 isfiiqlfhr fearkpiilf ahgflcissl lllaasiiwm leeghkvsqn stapttlivn
      301 llfttlllhn vqklhergcs eavhltascg faavaifivl lllllwyhrn kpkekmtnit
      361 rftqstqdtt spvleetrgq kqeee
//
LOCUS       XP_053931123             363 aa            linear   VRT 09-MAR-2023
DEFINITION  hepatocyte cell adhesion molecule-like isoform X9 [Cuculus
            canorus].
ACCESSION   XP_053931123
VERSION     XP_053931123.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075148.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..363
                     /product="hepatocyte cell adhesion molecule-like isoform
                     X9"
                     /calculated_mol_wt=40445
     Region          31..106
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          38..42
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409430"
     Region          50..55
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409430"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409430"
     Region          141..215
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          144..148
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          158..162
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          181..185
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          195..200
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..363
                     /gene="LOC128853107"
                     /coded_by="XM_054075148.1:401..1492"
                     /db_xref="GeneID:128853107"
ORIGIN      
        1 mltqlqaait gylllilqvs famveitekr yavegssilm hapdiknisf iqweylspts
       61 salilqhyad sqsltiypay qgrvtfyqkn gsillqglee tdsgtykatv dlmqdkartt
      121 llkvikpvpq pelqctsnla gspielvclv pegvevfsis wkkdgrplpa ekcyllseni
      181 tvlwirngek sdcgtyscni snmiswkeat lnlmvtgltp plhhaqrlvi valmfttvsa
      241 isfiiqlfhr feearkpiil fahgflciss llllaasiiw mleegfsaaf illalfclvg
      301 vigstevaaa avrpespryc kieiyhrnkp kekmtnitrf tqstqdttsp vleetrgqkq
      361 eee
//
LOCUS       XP_053931124             355 aa            linear   VRT 09-MAR-2023
DEFINITION  hepatocyte cell adhesion molecule-like isoform X10 [Cuculus
            canorus].
ACCESSION   XP_053931124
VERSION     XP_053931124.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075149.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..355
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..355
                     /product="hepatocyte cell adhesion molecule-like isoform
                     X10"
                     /calculated_mol_wt=39752
     Region          31..106
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          38..42
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409430"
     Region          50..55
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409430"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409430"
     Region          141..215
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          144..148
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          158..162
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          181..185
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          195..200
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..355
                     /gene="LOC128853107"
                     /coded_by="XM_054075149.1:401..1468"
                     /db_xref="GeneID:128853107"
ORIGIN      
        1 mltqlqaait gylllilqvs famveitekr yavegssilm hapdiknisf iqweylspts
       61 salilqhyad sqsltiypay qgrvtfyqkn gsillqglee tdsgtykatv dlmqdkartt
      121 llkvikpvpq pelqctsnla gspielvclv pegvevfsis wkkdgrplpa ekcyllseni
      181 tvlwirngek sdcgtyscni snmiswkeat lnlmvtgltp plhhaqrlvi valmfttvsa
      241 isfiiqlfhr feearkpiil fahgflciss llllaasiiw mleeghkvsq nstapttliv
      301 nllfttlllh nvqklhdhrn kpkekmtnit rftqstqdtt spvleetrgq kqeee
//
LOCUS       XP_053931125             354 aa            linear   VRT 09-MAR-2023
DEFINITION  hepatocyte cell adhesion molecule-like isoform X11 [Cuculus
            canorus].
ACCESSION   XP_053931125
VERSION     XP_053931125.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075150.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..354
                     /product="hepatocyte cell adhesion molecule-like isoform
                     X11"
                     /calculated_mol_wt=39610
     Region          31..106
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          38..42
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409430"
     Region          50..55
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409430"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409430"
     Region          141..215
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          144..148
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:143207"
     Region          158..162
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:143207"
     Region          181..185
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:143207"
     Region          195..200
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:143207"
     Region          208..211
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:143207"
     CDS             1..354
                     /gene="LOC128853107"
                     /coded_by="XM_054075150.1:400..1464"
                     /db_xref="GeneID:128853107"
ORIGIN      
        1 mltqlqaait gylllilqvs famveitekr yavegssilm hapdiknisf iqweylspts
       61 salilqhyad sqsltiypay qgrvtfyqkn gsillqglee tdsgtykatv dlmqdkartt
      121 llkvikpvpq pelqctsnla gspielvclv pegvevfsis wkkdgrplpa ekcyllseni
      181 tvlwirngek sdcgtyscni snmiswkeat lnlmvtgltp plhhaqrlvi valmfttvsa
      241 isfiiqlfhr rskethnsvc pwifvhllsp sacclhhlda grrffcclhl acpvlpcwgd
      301 rkyrgcssss etriskilqn rnmaqsqpef ysphnadrql vvhhpfapqc peap
//
LOCUS       XP_053931126             353 aa            linear   VRT 09-MAR-2023
DEFINITION  hepatocyte cell adhesion molecule-like isoform X12 [Cuculus
            canorus].
ACCESSION   XP_053931126
VERSION     XP_053931126.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075151.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..353
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..353
                     /product="hepatocyte cell adhesion molecule-like isoform
                     X12"
                     /calculated_mol_wt=39389
     Region          31..106
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          38..42
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409430"
     Region          50..55
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409430"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409430"
     Region          141..215
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          144..148
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:143207"
     Region          158..162
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:143207"
     Region          181..185
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:143207"
     Region          195..200
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:143207"
     Region          208..211
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:143207"
     CDS             1..353
                     /gene="LOC128853107"
                     /coded_by="XM_054075151.1:399..1460"
                     /db_xref="GeneID:128853107"
ORIGIN      
        1 mltqlqaait gylllilqvs famveitekr yavegssilm hapdiknisf iqweylspts
       61 salilqhyad sqsltiypay qgrvtfyqkn gsillqglee tdsgtykatv dlmqdkartt
      121 llkvikpvpq pelqctsnla gspielvclv pegvevfsis wkkdgrplpa ekcyllseni
      181 tvlwirngek sdcgtyscni snmiswkeat lnlmvtgltp plhhaqrlvi valmfttvsa
      241 isfiiqlfhr fghkvsqnst apttlivnll fttlllhnvq klhergcsea vhltascgfa
      301 avaifivlll lllwyhrnkp kekmtnitrf tqstqdttsp vleetrgqkq eee
//
LOCUS       XP_053931127             350 aa            linear   VRT 09-MAR-2023
DEFINITION  hepatocyte cell adhesion molecule-like isoform X13 [Cuculus
            canorus].
ACCESSION   XP_053931127
VERSION     XP_053931127.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075152.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..350
                     /product="hepatocyte cell adhesion molecule-like isoform
                     X13"
                     /calculated_mol_wt=38621
     Region          31..106
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          38..42
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409430"
     Region          50..55
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409430"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409430"
     Region          141..215
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          144..148
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          158..162
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          181..185
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          195..200
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..350
                     /gene="LOC128853107"
                     /coded_by="XM_054075152.1:401..1453"
                     /db_xref="GeneID:128853107"
ORIGIN      
        1 mltqlqaait gylllilqvs famveitekr yavegssilm hapdiknisf iqweylspts
       61 salilqhyad sqsltiypay qgrvtfyqkn gsillqglee tdsgtykatv dlmqdkartt
      121 llkvikpvpq pelqctsnla gspielvclv pegvevfsis wkkdgrplpa ekcyllseni
      181 tvlwirngek sdcgtyscni snmiswkeat lnlmvtgltp plhhaqrlvi valmfttvsa
      241 isfiiqlfhr feearkpiil fahgflciss llllaasiiw mleegfsaaf illalfclvg
      301 vigstevaaa avrpespryc kieicagrnp rteagrgvkd rpftswgrap
//
LOCUS       XP_053931128             345 aa            linear   VRT 09-MAR-2023
DEFINITION  hepatocyte cell adhesion molecule-like isoform X14 [Cuculus
            canorus].
ACCESSION   XP_053931128
VERSION     XP_053931128.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075153.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..345
                     /product="hepatocyte cell adhesion molecule-like isoform
                     X14"
                     /calculated_mol_wt=38695
     Region          31..106
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          38..42
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409430"
     Region          50..55
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409430"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409430"
     Region          141..215
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          144..148
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:143207"
     Region          158..162
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:143207"
     Region          181..185
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:143207"
     Region          195..200
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:143207"
     Region          208..211
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:143207"
     CDS             1..345
                     /gene="LOC128853107"
                     /coded_by="XM_054075153.1:401..1438"
                     /db_xref="GeneID:128853107"
ORIGIN      
        1 mltqlqaait gylllilqvs famveitekr yavegssilm hapdiknisf iqweylspts
       61 salilqhyad sqsltiypay qgrvtfyqkn gsillqglee tdsgtykatv dlmqdkartt
      121 llkvikpvpq pelqctsnla gspielvclv pegvevfsis wkkdgrplpa ekcyllseni
      181 tvlwirngek sdcgtyscni snmiswkeat lnlmvtgltp plhhaqrlvi valmfttvsa
      241 isfiiqlfhr rskethnsvc pwifvhllsp sacclhhlda grrffcclhl acpvlpcwgd
      301 rkyrgcssss etriskilqn rnmcwkkped rsrkrskgss lhqlg
//
LOCUS       XP_053931129             405 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853108 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931129
VERSION     XP_053931129.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075154.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..405
                     /product="uncharacterized protein LOC128853108 isoform X1"
                     /calculated_mol_wt=44679
     Region          194..274
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          204..208
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409559"
     Region          216..221
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409559"
     Region          240..244
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409559"
     Region          254..263
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409559"
     Region          267..270
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409559"
     CDS             1..405
                     /gene="LOC128853108"
                     /coded_by="XM_054075154.1:4151..5368"
                     /db_xref="GeneID:128853108"
ORIGIN      
        1 mgpqsralsp psadtrtksp slhiwihgsg wspgqcptpq alhldsgrps gqclplppsl
       61 hiwmqswskp lstsartlsp cysanlspas erlvsavgct vlltvpplna tkavfweykt
      121 gsqegviisy afnrpanasr fyenrtkfne tdfslqmvlq rgddrlyrfr sgsdatgwfq
      181 lrvvellsep eivgnslvka ggniklvcnv lggkadlyrw kkngelllgs nhiqfvdntt
      241 tlcimkasmn dsgyytcvvh nevsqnetsf llhvqnaanv vlpmilacvf vgllagvfvw
      301 crsrdrpcrn gcclwtcllh qlvdlrkpss ggqvlcgaae epgavlpgee eaeerphafc
      361 sckggwsevg aglfskvrrd rvrenglrlh qerfrldirk hfftk
//
LOCUS       XP_053931131             383 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853108 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931131
VERSION     XP_053931131.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075156.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..383
                     /product="uncharacterized protein LOC128853108 isoform X2"
                     /calculated_mol_wt=42156
     Region          168..239
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     CDS             1..383
                     /gene="LOC128853108"
                     /coded_by="XM_054075156.1:6..1157"
                     /db_xref="GeneID:128853108"
ORIGIN      
        1 mllrgweqcg eggrnpqdrr csgrvpppml pvllllfvlp spgspaaggg vtartlspcy
       61 sanlspaser lvsavgctvl ltvpplnatk avfweyktgs qegviisyaf nrpanasrfy
      121 enrtkfnetd fslqmvlqrg ddrlyrfrsg sdatgwfqlr vvellsepei vgnslvkagg
      181 niklvcnvlg gkadlyrwkk ngelllgsnh iqfvdntttl cimkasmnds gyytcvvhne
      241 vsqnetsfll hvqnaanvvl pmilacvfvg llagvfvwcr srdrpcrngc clwtcllhql
      301 vdlrkpssgg qvlcgaaeep gavlpgeeea eerphafcsc kggwsevgag lfskvrrdrv
      361 renglrlhqe rfrldirkhf ftk
//
LOCUS       XP_053931132             378 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853108 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931132
VERSION     XP_053931132.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075157.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..378
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..378
                     /product="uncharacterized protein LOC128853108 isoform X3"
                     /calculated_mol_wt=41784
     Region          163..234
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     CDS             1..378
                     /gene="LOC128853108"
                     /coded_by="XM_054075157.1:14..1150"
                     /db_xref="GeneID:128853108"
ORIGIN      
        1 mllrgweqcg eggrnpqdrr csgrvpppml pvllllfvlp spgspaaart lspcysanls
       61 paserlvsav gctvlltvpp lnatkavfwe yktgsqegvi isyafnrpan asrfyenrtk
      121 fnetdfslqm vlqrgddrly rfrsgsdatg wfqlrvvell sepeivgnsl vkaggniklv
      181 cnvlggkadl yrwkkngell lgsnhiqfvd ntttlcimka smndsgyytc vvhnevsqne
      241 tsfllhvqna anvvlpmila cvfvgllagv fvwcrsrdrp crngcclwtc llhqlvdlrk
      301 pssggqvlcg aaeepgavlp geeeaeerph afcsckggws evgaglfskv rrdrvrengl
      361 rlhqerfrld irkhfftk
//
LOCUS       XP_053931133             362 aa            linear   VRT 09-MAR-2023
DEFINITION  carcinoembryonic antigen-related cell adhesion molecule 2-like
            isoform X4 [Cuculus canorus].
ACCESSION   XP_053931133
VERSION     XP_053931133.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075158.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..362
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..362
                     /product="carcinoembryonic antigen-related cell adhesion
                     molecule 2-like isoform X4"
                     /calculated_mol_wt=39453
     Region          198..274
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          204..208
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409559"
     Region          216..221
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409559"
     Region          240..244
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409559"
     Region          254..263
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409559"
     Region          267..270
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409559"
     CDS             1..362
                     /gene="LOC128853108"
                     /coded_by="XM_054075158.1:4151..5239"
                     /db_xref="GeneID:128853108"
ORIGIN      
        1 mgpqsralsp psadtrtksp slhiwihgsg wspgqcptpq alhldsgrps gqclplppsl
       61 hiwmqswskp lstsartlsp cysanlspas erlvsavgct vlltvpplna tkavfweykt
      121 gsqegviisy afnrpanasr fyenrtkfne tdfslqmvlq rgddrlyrfr sgsdatgwfq
      181 lrvvellsep eivgnslvka ggniklvcnv lggkadlyrw kkngelllgs nhiqfvdntt
      241 tlcimkasmn dsgyytcvvh nevsqnetsf llhvqnaanv vlpmilacvf vgllagvfvw
      301 crsrdrpcrn gcwwwqtlkm ldftpcstlw eeplcpgrts gsciptgtaa qggggvpipg
      361 sv
//
LOCUS       XP_053931134             307 aa            linear   VRT 09-MAR-2023
DEFINITION  carcinoembryonic antigen-related cell adhesion molecule 2-like
            isoform X5 [Cuculus canorus].
ACCESSION   XP_053931134
VERSION     XP_053931134.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075159.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..307
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..307
                     /product="carcinoembryonic antigen-related cell adhesion
                     molecule 2-like isoform X5"
                     /calculated_mol_wt=33535
     Region          198..274
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          204..208
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409559"
     Region          216..221
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409559"
     Region          240..244
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409559"
     Region          254..263
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409559"
     Region          267..270
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409559"
     CDS             1..307
                     /gene="LOC128853108"
                     /coded_by="XM_054075159.1:4151..5074"
                     /db_xref="GeneID:128853108"
ORIGIN      
        1 mgpqsralsp psadtrtksp slhiwihgsg wspgqcptpq alhldsgrps gqclplppsl
       61 hiwmqswskp lstsartlsp cysanlspas erlvsavgct vlltvpplna tkavfweykt
      121 gsqegviisy afnrpanasr fyenrtkfne tdfslqmvlq rgddrlyrfr sgsdatgwfq
      181 lrvvellsep eivgnslvka ggniklvcnv lggkadlyrw kkngelllgs nhiqfvdntt
      241 tlcimkasmn dsgyytcvvh nevsqnetsf llhvqnaanv vlpmilacvf vgllaacgpv
      301 cctnwwi
//
LOCUS       XP_053931135             307 aa            linear   VRT 09-MAR-2023
DEFINITION  carcinoembryonic antigen-related cell adhesion molecule 2-like
            isoform X6 [Cuculus canorus].
ACCESSION   XP_053931135
VERSION     XP_053931135.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075160.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..307
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..307
                     /product="carcinoembryonic antigen-related cell adhesion
                     molecule 2-like isoform X6"
                     /calculated_mol_wt=33440
     Region          198..274
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          204..208
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409559"
     Region          216..221
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409559"
     Region          240..244
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409559"
     Region          254..263
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409559"
     Region          267..270
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409559"
     CDS             1..307
                     /gene="LOC128853108"
                     /coded_by="XM_054075160.1:4151..5074"
                     /db_xref="GeneID:128853108"
ORIGIN      
        1 mgpqsralsp psadtrtksp slhiwihgsg wspgqcptpq alhldsgrps gqclplppsl
       61 hiwmqswskp lstsartlsp cysanlspas erlvsavgct vlltvpplna tkavfweykt
      121 gsqegviisy afnrpanasr fyenrtkfne tdfslqmvlq rgddrlyrfr sgsdatgwfq
      181 lrvvellsep eivgnslvka ggniklvcnv lggkadlyrw kkngelllgs nhiqfvdntt
      241 tlcimkasmn dsgyytcvvh nevsqnetsf llhvqnaanv vlpmilacvf vgllagalle
      301 nlctlvl
//
LOCUS       XP_053931136             293 aa            linear   VRT 09-MAR-2023
DEFINITION  tumor necrosis factor ligand superfamily member 10 [Cuculus
            canorus].
ACCESSION   XP_053931136
VERSION     XP_053931136.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075161.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..293
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..293
                     /product="tumor necrosis factor ligand superfamily member
                     10"
                     /calculated_mol_wt=31755
     Site            order(135,194,196,254,259,285,289)
                     /site_type="other"
                     /note="trimer interface [polypeptide binding]"
                     /db_xref="CDD:238108"
     Region          166..291
                     /region_name="TNF"
                     /note="TNF(Tumour Necrosis Factor) family; pfam00229"
                     /db_xref="CDD:425540"
     Site            order(167..168,173,218,225,229)
                     /site_type="active"
                     /note="receptor binding sites [active]"
                     /db_xref="CDD:238108"
     CDS             1..293
                     /gene="LOC104066246"
                     /coded_by="XM_054075161.1:34..915"
                     /db_xref="GeneID:104066246"
ORIGIN      
        1 maardcagaa gaggrrgllw gclgvgavla lqlvsatglf vyfsmaiakl kaqvpgstee
       61 lrclqvisqq qdgssleeli snqsclklan tikayvatvt envihrsavk earrssfnis
      121 egqvlrrtmg kpsahltlra qglaedgnsk pfgnlsqscr haisywedst ihshlqnity
      181 rdgrlrvnqa gkyyvysqiy frypsagant rvsvpqlvqc inwktsysqp illlkgvgtk
      241 cwapeadygl halyqgglfe lkagdelfvs vsslaidynd aaasyfgafr ldl
//
LOCUS       XP_053931137             200 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853109 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931137
VERSION     XP_053931137.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075162.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..200
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..200
                     /product="uncharacterized protein LOC128853109 isoform X1"
                     /calculated_mol_wt=21392
     Region          91..189
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          101..105
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409431"
     Region          114..118
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409431"
     Region          155..159
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409431"
     Region          169..174
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409431"
     Region          181..184
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409431"
     CDS             1..200
                     /gene="LOC128853109"
                     /coded_by="XM_054075162.1:108..710"
                     /db_xref="GeneID:128853109"
ORIGIN      
        1 mlrapaprek lgagnplifw apggglvprr gplsarcgtr wrsglswvpa gvspgrllfs
       61 sgslrgrsrt irltgllvsl qeavgapgvl rrkvtavgss vllpgpdnit hidstrwefl
      121 ngtssntilq yyrgshkqai hapytgraif hpsngsllle dvqesdsgiy kvtvnvrnsg
      181 smkillevls kwwaweggag
//
LOCUS       XP_053931138             181 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853109 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931138
VERSION     XP_053931138.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075163.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..181
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..181
                     /product="uncharacterized protein LOC128853109 isoform X2"
                     /calculated_mol_wt=19536
     Region          72..170
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          82..86
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409431"
     Region          95..99
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409431"
     Region          136..140
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409431"
     Region          150..155
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409431"
     Region          162..165
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409431"
     CDS             1..181
                     /gene="LOC128853109"
                     /coded_by="XM_054075163.1:65..610"
                     /db_xref="GeneID:128853109"
ORIGIN      
        1 mrtvlclvpr rgplsarcgt rwrsglswvp agvspgrllf ssgslrgrsr tirltgllvs
       61 lqeavgapgv lrrkvtavgs svllpgpdni thidstrwef lngtssntil qyyrgshkqa
      121 ihapytgrai fhpsngslll edvqesdsgi ykvtvnvrns gsmkillevl skwwawegga
      181 g
//
LOCUS       XP_053931140             525 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853110 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931140
VERSION     XP_053931140.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075165.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..525
                     /product="uncharacterized protein LOC128853110 isoform X1"
                     /calculated_mol_wt=56795
     Region          <330..376
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          349..353
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409431"
     Region          363..370
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409431"
     CDS             1..525
                     /gene="LOC128853110"
                     /coded_by="XM_054075165.1:3480..5057"
                     /db_xref="GeneID:128853110"
ORIGIN      
        1 mvlvgpfqlr tlcngnmavt ldllcfyscd dqihmkrlkc frggshkfns krvfatagst
       61 pgcahswegr kalsraaclv flslgeaelf tagfprpcsg easlctawsl lsslpaasrf
      121 eppagnsant frcvstsseq gkeaedlgsc papaasagss tqavvggdrk kawacmltsk
      181 pcspqsteek pltssaaeat pwrcwlgavm qslvgsrprc rcgdqlatap ttapllrtee
      241 mssswhywsl ssfllllgrn lgalieihqd svngtvgqpm llpvsyrfdg ailfpvsisw
      301 tfsnssntvi acalqncsld argapsncsa effpqktyrd raalfplngs lllwdlrlsd
      361 ggvyavtfrv tyqsgngisr qlhstrhstf reschtrnit ltvheqrfts ehpgtsetvq
      421 qdlirncaia icssasllll lllfccmrhr gaaqqqkrki teqqqvsgme kahmestgga
      481 vvtiyatign sfeqppprpt pevvytsits ldppglntrp yhllv
//
LOCUS       XP_053931141             525 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853110 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931141
VERSION     XP_053931141.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075166.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..525
                     /product="uncharacterized protein LOC128853110 isoform X1"
                     /calculated_mol_wt=56795
     Region          <330..376
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          349..353
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409431"
     Region          363..370
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409431"
     CDS             1..525
                     /gene="LOC128853110"
                     /coded_by="XM_054075166.1:3480..5057"
                     /db_xref="GeneID:128853110"
ORIGIN      
        1 mvlvgpfqlr tlcngnmavt ldllcfyscd dqihmkrlkc frggshkfns krvfatagst
       61 pgcahswegr kalsraaclv flslgeaelf tagfprpcsg easlctawsl lsslpaasrf
      121 eppagnsant frcvstsseq gkeaedlgsc papaasagss tqavvggdrk kawacmltsk
      181 pcspqsteek pltssaaeat pwrcwlgavm qslvgsrprc rcgdqlatap ttapllrtee
      241 mssswhywsl ssfllllgrn lgalieihqd svngtvgqpm llpvsyrfdg ailfpvsisw
      301 tfsnssntvi acalqncsld argapsncsa effpqktyrd raalfplngs lllwdlrlsd
      361 ggvyavtfrv tyqsgngisr qlhstrhstf reschtrnit ltvheqrfts ehpgtsetvq
      421 qdlirncaia icssasllll lllfccmrhr gaaqqqkrki teqqqvsgme kahmestgga
      481 vvtiyatign sfeqppprpt pevvytsits ldppglntrp yhllv
//
LOCUS       XP_053931142             523 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853110 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931142
VERSION     XP_053931142.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075167.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..523
                     /product="uncharacterized protein LOC128853110 isoform X2"
                     /calculated_mol_wt=56621
     Region          <330..376
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          349..353
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409431"
     Region          363..370
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409431"
     CDS             1..523
                     /gene="LOC128853110"
                     /coded_by="XM_054075167.1:3480..5051"
                     /db_xref="GeneID:128853110"
ORIGIN      
        1 mvlvgpfqlr tlcngnmavt ldllcfyscd dqihmkrlkc frggshkfns krvfatagst
       61 pgcahswegr kalsraaclv flslgeaelf tagfprpcsg easlctawsl lsslpaasrf
      121 eppagnsant frcvstsseq gkeaedlgsc papaasagss tqavvggdrk kawacmltsk
      181 pcspqsteek pltssaaeat pwrcwlgavm qslvgsrprc rcgdqlatap ttapllrtee
      241 mssswhywsl ssfllllgrn lgalieihqd svngtvgqpm llpvsyrfdg ailfpvsisw
      301 tfsnssntvi acalqncsld argapsncsa effpqktyrd raalfplngs lllwdlrlsd
      361 ggvyavtfrv tyqsgngisr qlhstrhstf reschtrnit ltvheqrfts ehpaetvqqd
      421 lirncaiaic ssasllllll lfccmrhrga aqqqkrkite qqqvsgmeka hmestggavv
      481 tiyatignsf eqppprptpe vvytsitsld ppglntrpyh llv
//
LOCUS       XP_053931143             523 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853110 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931143
VERSION     XP_053931143.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075168.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..523
                     /product="uncharacterized protein LOC128853110 isoform X3"
                     /calculated_mol_wt=56667
     Region          <330..376
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          349..353
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409431"
     Region          363..370
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409431"
     CDS             1..523
                     /gene="LOC128853110"
                     /coded_by="XM_054075168.1:3480..5051"
                     /db_xref="GeneID:128853110"
ORIGIN      
        1 mvlvgpfqlr tlcngnmavt ldllcfyscd dqihmkrlkc frggshkfns krvfatagst
       61 pgcahswegr kalsraaclv flslgeaelf tagfprpcsg easlctawsl lsslpaasrf
      121 eppagnsant frcvstsseq gkeaedlgsc papaasagss tqavvggdrk kawacmltsk
      181 pcspqsteek pltssaaeat pwrcwlgavm qslvgsrprc rcgdqlatap ttapllrtee
      241 mssswhywsl ssfllllgrn lgalieihqd svngtvgqpm llpvsyrfdg ailfpvsisw
      301 tfsnssntvi acalqncsld argapsncsa effpqktyrd raalfplngs lllwdlrlsd
      361 ggvyavtfrv tyqsgngisr qlhstrhstf reschtrnit ltvheqrfts ehpgtsetvq
      421 qdlirncaia icssasllll lllfccmrhr aqqqkrkite qqqvsgmeka hmestggavv
      481 tiyatignsf eqppprptpe vvytsitsld ppglntrpyh llv
//
LOCUS       XP_053931144             522 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853110 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931144
VERSION     XP_053931144.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075169.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..522
                     /product="uncharacterized protein LOC128853110 isoform X4"
                     /calculated_mol_wt=56550
     Region          <330..376
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          349..353
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409431"
     Region          363..370
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409431"
     CDS             1..522
                     /gene="LOC128853110"
                     /coded_by="XM_054075169.1:3480..5048"
                     /db_xref="GeneID:128853110"
ORIGIN      
        1 mvlvgpfqlr tlcngnmavt ldllcfyscd dqihmkrlkc frggshkfns krvfatagst
       61 pgcahswegr kalsraaclv flslgeaelf tagfprpcsg easlctawsl lsslpaasrf
      121 eppagnsant frcvstsseq gkeaedlgsc papaasagss tqavvggdrk kawacmltsk
      181 pcspqsteek pltssaaeat pwrcwlgavm qslvgsrprc rcgdqlatap ttapllrtee
      241 mssswhywsl ssfllllgrn lgalieihqd svngtvgqpm llpvsyrfdg ailfpvsisw
      301 tfsnssntvi acalqncsld argapsncsa effpqktyrd raalfplngs lllwdlrlsd
      361 ggvyavtfrv tyqsgngisr qlhstrhstf reschtrnit ltvheqrfts ehpetvqqdl
      421 irncaiaics saslllllll fccmrhrgaa qqqkrkiteq qqvsgmekah mestggavvt
      481 iyatignsfe qppprptpev vytsitsldp pglntrpyhl lv
//
LOCUS       XP_053931145             521 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853110 isoform X5 [Cuculus canorus].
ACCESSION   XP_053931145
VERSION     XP_053931145.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075170.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..521
                     /product="uncharacterized protein LOC128853110 isoform X5"
                     /calculated_mol_wt=56493
     Region          <330..376
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          349..353
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409431"
     Region          363..370
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409431"
     CDS             1..521
                     /gene="LOC128853110"
                     /coded_by="XM_054075170.1:3480..5045"
                     /db_xref="GeneID:128853110"
ORIGIN      
        1 mvlvgpfqlr tlcngnmavt ldllcfyscd dqihmkrlkc frggshkfns krvfatagst
       61 pgcahswegr kalsraaclv flslgeaelf tagfprpcsg easlctawsl lsslpaasrf
      121 eppagnsant frcvstsseq gkeaedlgsc papaasagss tqavvggdrk kawacmltsk
      181 pcspqsteek pltssaaeat pwrcwlgavm qslvgsrprc rcgdqlatap ttapllrtee
      241 mssswhywsl ssfllllgrn lgalieihqd svngtvgqpm llpvsyrfdg ailfpvsisw
      301 tfsnssntvi acalqncsld argapsncsa effpqktyrd raalfplngs lllwdlrlsd
      361 ggvyavtfrv tyqsgngisr qlhstrhstf reschtrnit ltvheqrfts ehpaetvqqd
      421 lirncaiaic ssasllllll lfccmrhraq qqkrkiteqq qvsgmekahm estggavvti
      481 yatignsfeq ppprptpevv ytsitsldpp glntrpyhll v
//
LOCUS       XP_053931146             520 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853110 isoform X6 [Cuculus canorus].
ACCESSION   XP_053931146
VERSION     XP_053931146.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075171.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..520
                     /product="uncharacterized protein LOC128853110 isoform X6"
                     /calculated_mol_wt=56422
     Region          <330..376
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          349..353
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409431"
     Region          363..370
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409431"
     CDS             1..520
                     /gene="LOC128853110"
                     /coded_by="XM_054075171.1:3480..5042"
                     /db_xref="GeneID:128853110"
ORIGIN      
        1 mvlvgpfqlr tlcngnmavt ldllcfyscd dqihmkrlkc frggshkfns krvfatagst
       61 pgcahswegr kalsraaclv flslgeaelf tagfprpcsg easlctawsl lsslpaasrf
      121 eppagnsant frcvstsseq gkeaedlgsc papaasagss tqavvggdrk kawacmltsk
      181 pcspqsteek pltssaaeat pwrcwlgavm qslvgsrprc rcgdqlatap ttapllrtee
      241 mssswhywsl ssfllllgrn lgalieihqd svngtvgqpm llpvsyrfdg ailfpvsisw
      301 tfsnssntvi acalqncsld argapsncsa effpqktyrd raalfplngs lllwdlrlsd
      361 ggvyavtfrv tyqsgngisr qlhstrhstf reschtrnit ltvheqrfts ehpetvqqdl
      421 irncaiaics saslllllll fccmrhraqq qkrkiteqqq vsgmekahme stggavvtiy
      481 atignsfeqp pprptpevvy tsitsldppg lntrpyhllv
//
LOCUS       XP_053931147             486 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853110 isoform X7 [Cuculus canorus].
ACCESSION   XP_053931147
VERSION     XP_053931147.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075172.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..486
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..486
                     /product="uncharacterized protein LOC128853110 isoform X7"
                     /calculated_mol_wt=52591
     Region          <330..376
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          349..353
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409431"
     Region          363..370
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409431"
     CDS             1..486
                     /gene="LOC128853110"
                     /coded_by="XM_054075172.1:3480..4940"
                     /db_xref="GeneID:128853110"
ORIGIN      
        1 mvlvgpfqlr tlcngnmavt ldllcfyscd dqihmkrlkc frggshkfns krvfatagst
       61 pgcahswegr kalsraaclv flslgeaelf tagfprpcsg easlctawsl lsslpaasrf
      121 eppagnsant frcvstsseq gkeaedlgsc papaasagss tqavvggdrk kawacmltsk
      181 pcspqsteek pltssaaeat pwrcwlgavm qslvgsrprc rcgdqlatap ttapllrtee
      241 mssswhywsl ssfllllgrn lgalieihqd svngtvgqpm llpvsyrfdg ailfpvsisw
      301 tfsnssntvi acalqncsld argapsncsa effpqktyrd raalfplngs lllwdlrlsd
      361 ggvyavtfrv tyqsgngisr qlhstrhstf reschtrnit ltvheqrfts ehpaqqqkrk
      421 iteqqqvsgm ekahmestgg avvtiyatig nsfeqppprp tpevvytsit sldppglntr
      481 pyhllv
//
LOCUS       XP_053931148             435 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853110 isoform X8 [Cuculus canorus].
ACCESSION   XP_053931148
VERSION     XP_053931148.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075173.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..435
                     /product="uncharacterized protein LOC128853110 isoform X8"
                     /calculated_mol_wt=47301
     Region          35..133
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          45..49
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409431"
     Region          58..62
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409431"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409431"
     Region          113..118
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409431"
     Region          125..128
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409431"
     Region          136..156
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409402"
     Region          <165..222
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          166..170
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409402"
     Region          188..192
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409402"
     Region          202..207
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409402"
     CDS             1..435
                     /gene="LOC128853110"
                     /coded_by="XM_054075173.1:5188..6495"
                     /db_xref="GeneID:128853110"
ORIGIN      
        1 mlmcrpvell gtswmllagl lvslqeavga pgvlrrkvta vgssvllpgp dnithidstr
       61 weflngtssn tilqyyrgsh kqaihapytg raifhpsngs llledvqesd sgiykvtvnv
      121 qnseslkill evlkpvshpr lwssvlvarg tgevlcevae grvdtftwkk ngqplppdrr
      181 ihtsdglsil ylrsvkksdc gsyscnasng iswqetslnv tvaglslplq dmlrvavvav
      241 vfaavsgwgl ifpvcqsekl rirgelwrwl saytcglvci asilagtagi lwmreegpsi
      301 amilpeialt yaivvnflvs atvtfqptkf iqlksktaqr tlgyaapggv vavvlttsfl
      361 vknihnrhge gctefvevtv lavstaavsv lpllaiylcy httqgwlkec estwadkers
      421 femsqlrskd avsth
//
LOCUS       XP_053931149             435 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853110 isoform X8 [Cuculus canorus].
ACCESSION   XP_053931149
VERSION     XP_053931149.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075174.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..435
                     /product="uncharacterized protein LOC128853110 isoform X8"
                     /calculated_mol_wt=47301
     Region          35..133
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          45..49
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409431"
     Region          58..62
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409431"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409431"
     Region          113..118
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409431"
     Region          125..128
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409431"
     Region          136..156
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409402"
     Region          <165..222
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          166..170
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409402"
     Region          188..192
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409402"
     Region          202..207
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409402"
     CDS             1..435
                     /gene="LOC128853110"
                     /coded_by="XM_054075174.1:6820..8127"
                     /db_xref="GeneID:128853110"
ORIGIN      
        1 mlmcrpvell gtswmllagl lvslqeavga pgvlrrkvta vgssvllpgp dnithidstr
       61 weflngtssn tilqyyrgsh kqaihapytg raifhpsngs llledvqesd sgiykvtvnv
      121 qnseslkill evlkpvshpr lwssvlvarg tgevlcevae grvdtftwkk ngqplppdrr
      181 ihtsdglsil ylrsvkksdc gsyscnasng iswqetslnv tvaglslplq dmlrvavvav
      241 vfaavsgwgl ifpvcqsekl rirgelwrwl saytcglvci asilagtagi lwmreegpsi
      301 amilpeialt yaivvnflvs atvtfqptkf iqlksktaqr tlgyaapggv vavvlttsfl
      361 vknihnrhge gctefvevtv lavstaavsv lpllaiylcy httqgwlkec estwadkers
      421 femsqlrskd avsth
//
LOCUS       XP_053931151             435 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853110 isoform X8 [Cuculus canorus].
ACCESSION   XP_053931151
VERSION     XP_053931151.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075176.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..435
                     /product="uncharacterized protein LOC128853110 isoform X8"
                     /calculated_mol_wt=47301
     Region          35..133
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          45..49
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409431"
     Region          58..62
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409431"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409431"
     Region          113..118
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409431"
     Region          125..128
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409431"
     Region          136..156
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409402"
     Region          <165..222
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          166..170
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409402"
     Region          188..192
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409402"
     Region          202..207
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409402"
     CDS             1..435
                     /gene="LOC128853110"
                     /coded_by="XM_054075176.1:694..2001"
                     /db_xref="GeneID:128853110"
ORIGIN      
        1 mlmcrpvell gtswmllagl lvslqeavga pgvlrrkvta vgssvllpgp dnithidstr
       61 weflngtssn tilqyyrgsh kqaihapytg raifhpsngs llledvqesd sgiykvtvnv
      121 qnseslkill evlkpvshpr lwssvlvarg tgevlcevae grvdtftwkk ngqplppdrr
      181 ihtsdglsil ylrsvkksdc gsyscnasng iswqetslnv tvaglslplq dmlrvavvav
      241 vfaavsgwgl ifpvcqsekl rirgelwrwl saytcglvci asilagtagi lwmreegpsi
      301 amilpeialt yaivvnflvs atvtfqptkf iqlksktaqr tlgyaapggv vavvlttsfl
      361 vknihnrhge gctefvevtv lavstaavsv lpllaiylcy httqgwlkec estwadkers
      421 femsqlrskd avsth
//
LOCUS       XP_053931152             435 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853110 isoform X8 [Cuculus canorus].
ACCESSION   XP_053931152
VERSION     XP_053931152.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075177.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..435
                     /product="uncharacterized protein LOC128853110 isoform X8"
                     /calculated_mol_wt=47301
     Region          35..133
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          45..49
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409431"
     Region          58..62
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409431"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409431"
     Region          113..118
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409431"
     Region          125..128
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409431"
     Region          136..156
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409402"
     Region          <165..222
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          166..170
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409402"
     Region          188..192
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409402"
     Region          202..207
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409402"
     CDS             1..435
                     /gene="LOC128853110"
                     /coded_by="XM_054075177.1:253..1560"
                     /db_xref="GeneID:128853110"
ORIGIN      
        1 mlmcrpvell gtswmllagl lvslqeavga pgvlrrkvta vgssvllpgp dnithidstr
       61 weflngtssn tilqyyrgsh kqaihapytg raifhpsngs llledvqesd sgiykvtvnv
      121 qnseslkill evlkpvshpr lwssvlvarg tgevlcevae grvdtftwkk ngqplppdrr
      181 ihtsdglsil ylrsvkksdc gsyscnasng iswqetslnv tvaglslplq dmlrvavvav
      241 vfaavsgwgl ifpvcqsekl rirgelwrwl saytcglvci asilagtagi lwmreegpsi
      301 amilpeialt yaivvnflvs atvtfqptkf iqlksktaqr tlgyaapggv vavvlttsfl
      361 vknihnrhge gctefvevtv lavstaavsv lpllaiylcy httqgwlkec estwadkers
      421 femsqlrskd avsth
//
LOCUS       XP_053931153             408 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853110 isoform X9 [Cuculus canorus].
ACCESSION   XP_053931153
VERSION     XP_053931153.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075178.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..408
                     /product="uncharacterized protein LOC128853110 isoform X9"
                     /calculated_mol_wt=44368
     Region          35..133
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          45..49
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409431"
     Region          58..62
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409431"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409431"
     Region          113..118
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409431"
     Region          125..128
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409431"
     Region          136..156
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409402"
     Region          <165..222
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          166..170
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409402"
     Region          188..192
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409402"
     Region          202..207
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409402"
     CDS             1..408
                     /gene="LOC128853110"
                     /coded_by="XM_054075178.1:5188..6414"
                     /db_xref="GeneID:128853110"
ORIGIN      
        1 mlmcrpvell gtswmllagl lvslqeavga pgvlrrkvta vgssvllpgp dnithidstr
       61 weflngtssn tilqyyrgsh kqaihapytg raifhpsngs llledvqesd sgiykvtvnv
      121 qnseslkill evlkpvshpr lwssvlvarg tgevlcevae grvdtftwkk ngqplppdrr
      181 ihtsdglsil ylrsvkksdc gsyscnasng iswqetslnv tvaglslplq dmlrvavvav
      241 vfaavsgwgl ifpvcqsekl rirgelwrwl saytcglvci asilagtagi lwmreegpsi
      301 amilpeialt yaivvnflvs atvtfqptkf iqlksktahs glrcsrrsgc sgaddqfprq
      361 ehpqspwrrm hgvcrgdcpc rqhsgrvsas apcylpllsh nsgmaegm
//
LOCUS       XP_053931154             306 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853110 isoform X10 [Cuculus canorus].
ACCESSION   XP_053931154
VERSION     XP_053931154.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075179.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..306
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..306
                     /product="uncharacterized protein LOC128853110 isoform
                     X10"
                     /calculated_mol_wt=33294
     Region          35..133
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          45..49
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409431"
     Region          58..62
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409431"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409431"
     Region          113..118
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409431"
     Region          125..128
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409431"
     CDS             1..306
                     /gene="LOC128853110"
                     /coded_by="XM_054075179.1:5188..6108"
                     /db_xref="GeneID:128853110"
ORIGIN      
        1 mlmcrpvell gtswmllagl lvslqeavga pgvlrrkvta vgssvllpgp dnithidstr
       61 weflngtssn tilqyyrgsh kqaihapytg raifhpsngs llledvqesd sgiykvtvnv
      121 qnseslkill evlrgelwrw lsaytcglvc iasilagtag ilwmreegps iamilpeial
      181 tyaivvnflv satvtfqptk fiqlksktaq rtlgyaapgg vvavvlttsf lvknihnrhg
      241 egctefvevt vlavstaavs vlpllaiylc yhttqgwlke cestwadker sfemsqlrsk
      301 davsth
//
LOCUS       XP_053931155             421 aa            linear   VRT 09-MAR-2023
DEFINITION  trimethyllysine dioxygenase, mitochondrial isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053931155
VERSION     XP_053931155.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075180.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..421
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..421
                     /product="trimethyllysine dioxygenase, mitochondrial
                     isoform X1"
                     /calculated_mol_wt=48650
     Region          70..419
                     /region_name="CAS_like"
                     /note="Clavaminic acid synthetase (CAS) -like; CAS is a
                     trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase
                     carrying out three reactions in the biosynthesis of
                     clavulanic acid, an inhibitor of class A serine
                     beta-lactamases. In general, Fe(II)-2OG oxygenases...;
                     cl00184"
                     /db_xref="CDD:444731"
     Site            order(211..212,245,247,252,303,402,404)
                     /site_type="other"
                     /note="substrate binding pocket [chemical binding]"
                     /db_xref="CDD:238154"
     Site            order(242,244,269,389,398)
                     /site_type="active"
                     /db_xref="CDD:238154"
     Site            order(242,244,389)
                     /site_type="other"
                     /note="iron coordination sites [ion binding]"
                     /db_xref="CDD:238154"
     CDS             1..421
                     /gene="TMLHE"
                     /coded_by="XM_054075180.1:378..1643"
                     /db_xref="GeneID:104060481"
ORIGIN      
        1 mwckrlacll kvpcqpsgsa ghrsswilhg srtvlvaaar whhkapeslr cawqlhgdhl
       61 elryantlmr fdfvwlrdhc rsascynakt nqrsldtasv dlgikpkavr vdettlfltw
      121 pdghvtrygl ewlvknsyeg qkqqvmhpri lwnaeiyrqa qvpsidcrsf letdkglkef
      181 lqnfllygia fvenvtptke dteilaervs liretiygrm wyftsdfsrg dtaytklald
      241 rhtdttyfqe pcgiqvfhcl khegtggrtl lvdgfyaaeq vlqqapdqfe llskvplkhe
      301 yvenvgdchn hmigvgpvln vypwnnelyl irynnydrav intvpydvvh rwyaahrtlt
      361 aelrrpenel wvklkpgkal fvdnwrvlhg reaftgyrql cgcyltrddv lntarllglq
      421 a
//
LOCUS       XP_053931156             419 aa            linear   VRT 09-MAR-2023
DEFINITION  trimethyllysine dioxygenase, mitochondrial isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053931156
VERSION     XP_053931156.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075181.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..419
                     /product="trimethyllysine dioxygenase, mitochondrial
                     isoform X2"
                     /calculated_mol_wt=47773
     Region          70..377
                     /region_name="CAS_like"
                     /note="Clavaminic acid synthetase (CAS) -like; CAS is a
                     trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase
                     carrying out three reactions in the biosynthesis of
                     clavulanic acid, an inhibitor of class A serine
                     beta-lactamases. In general, Fe(II)-2OG oxygenases...;
                     cl00184"
                     /db_xref="CDD:444731"
     CDS             1..419
                     /gene="TMLHE"
                     /coded_by="XM_054075181.1:382..1641"
                     /db_xref="GeneID:104060481"
ORIGIN      
        1 mwckrlacll kvpcqpsgsa ghrsswilhg srtvlvaaar whhkapeslr cawqlhgdhl
       61 elryantlmr fdfvwlrdhc rsascynakt nqrsldtasv dlgikpkavr vdettlfltw
      121 pdghvtrygl ewlvknsyeg qkqqvmhpri lwnaeiyrqa qvpsidcrsf letdkglkef
      181 lqnfllygia fvenvtptke dteilaervs liretiygrm wyftsdfsrg dtaytklald
      241 rhtdttyfqe pcgiqvfhcl khegtggrtl lvdgfyaaeq vlqqapdqfe llskvplkhe
      301 yvenvgdchn hmigvgpvln vypwnnelyl irynnydrav intvpydvvh rwyaahrtlt
      361 aelrrpenel wvklkpgkgh lpldqgaqgp dqpglgtppg mrqpqlpcat casasppsl
//
LOCUS       XP_053931157             674 aa            linear   VRT 09-MAR-2023
DEFINITION  ecto-NOX disulfide-thiol exchanger 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931157
VERSION     XP_053931157.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075182.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..674
                     /product="ecto-NOX disulfide-thiol exchanger 2 isoform X1"
                     /calculated_mol_wt=76450
     Region          167..250
                     /region_name="RRM_ENOX"
                     /note="RNA recognition motif (RRM) found in the cell
                     surface Ecto-NOX disulfide-thiol exchanger (ECTO-NOX or
                     ENOX) proteins; cd12228"
                     /db_xref="CDD:409675"
     Region          450..>559
                     /region_name="COG4372"
                     /note="Uncharacterized protein, contains DUF3084 domain
                     [Function unknown]"
                     /db_xref="CDD:443500"
     CDS             1..674
                     /gene="ENOX2"
                     /coded_by="XM_054075182.1:668..2692"
                     /db_xref="GeneID:104060490"
ORIGIN      
        1 mydqhlamfl vqyaglnhls fdpasnnksl qfssaagpqv sespaengsd pgkkrkrtni
       61 ppdggrnlsl dsipmglpms dptawatamn nlgmapmgmt gqpllpdfdp algmmtgipp
      121 inpmmpglgi vpppippdmp avkeiihcks ctlfppnphl pppatrerpp gcktvfvggl
      181 penateqiim evfeqcgevi airkskknfc hirfaeefmv dkalylsgyr irlgsstdkk
      241 dtgrlhvdfa qarddlyewe ckqrmlaree rhrrrleeer frppspppvv hysdhecsiv
      301 aeklkddtkf seaiqtlltw iergevnrrt annfysmiqs anshirrlvn ekaahekeme
      361 eakekfklal sgilvqfeqi vavyhsaskq kawdhftkaq rknisvwckq aeeirnihnd
      421 elmgirreee memsdeeied ppemketees alvsqvealk eendslrwql dayrnevell
      481 kqeqgkasrd edttkeqqmk llqqalqgmq khllkvqdey kkreaelekv keeklkvetl
      541 lanlkeqqsm adeedkerdg tdcqgnesst srvcacsqek ecpaektlsn spvkserevl
      601 lvgiistflh vhpfgasiey icsylqrlds kictaevevl mtrlqntfrq elsgvgasle
      661 krwkfcgfdg lkmt
//
LOCUS       XP_053931158             673 aa            linear   VRT 09-MAR-2023
DEFINITION  ecto-NOX disulfide-thiol exchanger 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931158
VERSION     XP_053931158.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075183.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..673
                     /product="ecto-NOX disulfide-thiol exchanger 2 isoform X2"
                     /calculated_mol_wt=75808
     Region          166..249
                     /region_name="RRM_ENOX"
                     /note="RNA recognition motif (RRM) found in the cell
                     surface Ecto-NOX disulfide-thiol exchanger (ECTO-NOX or
                     ENOX) proteins; cd12228"
                     /db_xref="CDD:409675"
     Region          449..>558
                     /region_name="COG4372"
                     /note="Uncharacterized protein, contains DUF3084 domain
                     [Function unknown]"
                     /db_xref="CDD:443500"
     CDS             1..673
                     /gene="ENOX2"
                     /coded_by="XM_054075183.1:3..2024"
                     /db_xref="GeneID:104060490"
ORIGIN      
        1 mlaaggggar glgglnhlsf dpasnnkslq fssaagpqvs espaengsdp gkkrkrtnip
       61 pdggrnlsld sipmglpmsd ptawatamnn lgmapmgmtg qpllpdfdpa lgmmtgippi
      121 npmmpglgiv pppippdmpa vkeiihcksc tlfppnphlp ppatrerppg cktvfvgglp
      181 enateqiime vfeqcgevia irkskknfch irfaeefmvd kalylsgyri rlgsstdkkd
      241 tgrlhvdfaq arddlyewec kqrmlareer hrrrleeerf rppspppvvh ysdhecsiva
      301 eklkddtkfs eaiqtlltwi ergevnrrta nnfysmiqsa nshirrlvne kaahekemee
      361 akekfklals gilvqfeqiv avyhsaskqk awdhftkaqr knisvwckqa eeirnihnde
      421 lmgirreeem emsdeeiedp pemketeesa lvsqvealke endslrwqld ayrnevellk
      481 qeqgkasrde dttkeqqmkl lqqalqgmqk hllkvqdeyk kreaelekvk eeklkvetll
      541 anlkeqqsma deedkerdgt dcqgnessts rvcacsqeke cpaektlsns pvkserevll
      601 vgiistflhv hpfgasieyi csylqrldsk ictaevevlm trlqntfrqe lsgvgaslek
      661 rwkfcgfdgl kmt
//
LOCUS       XP_053931160             464 aa            linear   VRT 09-MAR-2023
DEFINITION  rho GTPase-activating protein 36 [Cuculus canorus].
ACCESSION   XP_053931160
VERSION     XP_053931160.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075185.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..464
                     /product="rho GTPase-activating protein 36"
                     /calculated_mol_wt=51875
     Region          188..391
                     /region_name="RhoGAP"
                     /note="GTPase-activator protein (GAP) for Rho-like
                     GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases.
                     Small GTPases (G proteins) cluster into distinct families,
                     and all act as molecular switches, active in their
                     GTP-bound form but inactive when bound to...; cl02570"
                     /db_xref="CDD:470621"
     Site            order(219,256,260,339,342..343,371)
                     /site_type="other"
                     /note="GTPase interaction site"
                     /db_xref="CDD:239841"
     Site            219
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239841"
     CDS             1..464
                     /gene="ARHGAP36"
                     /coded_by="XM_054075185.1:157..1551"
                     /db_xref="GeneID:104060506"
ORIGIN      
        1 mqpvplhsls eleraslqei alyqlqekll lrdlslakdg pkssksirqk lesfskekkd
       61 cspqtfgipl fqviandray kqlqealkks rrlcleveat vtrfraqrqk ktlmgrscgl
      121 vpcgvfpeep lspafpnqsf wgqrrgamsv dsitdlsdnt sellealqls hpheldprrs
      181 lgkkkmlsln pissqvpriv drccnhiemh glqtvgifrv gsskkrvqql reefdqgldv
      241 fldehqsvhd vaallkeflr dmpdslipge lygaflstas mdrpaqlatl qlllfllppc
      301 hsdtlhrllr flskvaqhaq sswgpngqei pgnkmtvanl atifgpnilq kekpgekdag
      361 amnfkdsaai ilvlqklieh yqtlfmvste mqchilrrlf qtdpdvidyl lrrkfnavps
      421 tvsedsaddh appllpgltc nlesssvsse lysnvsflnl dvgi
//
LOCUS       XP_053931161            1030 aa            linear   VRT 09-MAR-2023
DEFINITION  probable global transcription activator SNF2L1 [Cuculus canorus].
ACCESSION   XP_053931161
VERSION     XP_053931161.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075186.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1030
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1030
                     /product="probable global transcription activator SNF2L1"
                     /calculated_mol_wt=119903
     Region          59..1029
                     /region_name="PLN03142"
                     /note="Probable chromatin-remodeling complex ATPase chain;
                     Provisional"
                     /db_xref="CDD:215601"
     CDS             1..1030
                     /gene="SMARCA1"
                     /coded_by="XM_054075186.1:46..3138"
                     /db_xref="GeneID:104058391"
ORIGIN      
        1 meagtaradc elpstsaaaa palepgaeee kndppfqlkl ppkaarpekd vdpeyeekmk
       61 tdrakrfefl lkqtelfahf iqpaaqkspt splkvklgrp rmkkdekqsl isagdyrhrr
      121 teqeedeell sesrktsnvc irfeespsyv kggtlrdyqv rglnwmisly engvngilad
      181 emglgktlqt iallgylkhy rnipgphmvl vpkstlhnwm nefkrwvpsl ravcligdkd
      241 araafirdvm mpgewdvcvt syemvikeks vfkkfnwryl videahrikn eksklseivr
      301 efkttnrlll tgtplqnnlh elwallnfll pdvfnsaddf dswfdtkncl gdqklverlh
      361 avlkpfllrr ikgevekslp pkkevkiylg lskmqrewyt rilmkdidil nsagkmdkmr
      421 llnilmqlrk ccnhpylfdg aepgppyttd thlitnsgkm lvldkllakl reqgsrvllf
      481 sqmtrlldil edycmwrgye ycrldgqtph eereeaidtf napnsskfif mlstragglg
      541 inlatadvvi lydsdwnpqv dlqamdrahr igqkkpvrvf rlitdntvee riveraeikl
      601 rldsiviqqg rlidqqsnkl akdemlqmir hgathvfask dselteedis tilergekkt
      661 aemnerlqkm gesslrnftm dtemslynfe gedyrekqkl smmewieppk rerkanyavd
      721 ayfrealrvs epkipkaprp pkqpniqdfq ffpprlfell ekeilyyrkt igykvprnpd
      781 lpnaaqvqke eqkkidesmp lnteeseeke klltqgftnw nkrdfnqfik anekygrddi
      841 dniarevegk speevieysa vfwercnelq dierimaqie rgeariqrri sikkaldaki
      901 arykapfhql riqygtnkgk nyteeedrfl icmlhkmgfd kenvyeelrq cvrnapqfrf
      961 dwfiksrtam efqrrcntli sliekenmei eekeraekkk rgakvtasqk rkadlaaess
     1021 gkkdakkvks
//
LOCUS       XP_053931162            1030 aa            linear   VRT 09-MAR-2023
DEFINITION  probable global transcription activator SNF2L1 [Cuculus canorus].
ACCESSION   XP_053931162
VERSION     XP_053931162.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075187.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1030
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1030
                     /product="probable global transcription activator SNF2L1"
                     /calculated_mol_wt=119903
     Region          59..1029
                     /region_name="PLN03142"
                     /note="Probable chromatin-remodeling complex ATPase chain;
                     Provisional"
                     /db_xref="CDD:215601"
     CDS             1..1030
                     /gene="SMARCA1"
                     /coded_by="XM_054075187.1:46..3138"
                     /db_xref="GeneID:104058391"
ORIGIN      
        1 meagtaradc elpstsaaaa palepgaeee kndppfqlkl ppkaarpekd vdpeyeekmk
       61 tdrakrfefl lkqtelfahf iqpaaqkspt splkvklgrp rmkkdekqsl isagdyrhrr
      121 teqeedeell sesrktsnvc irfeespsyv kggtlrdyqv rglnwmisly engvngilad
      181 emglgktlqt iallgylkhy rnipgphmvl vpkstlhnwm nefkrwvpsl ravcligdkd
      241 araafirdvm mpgewdvcvt syemvikeks vfkkfnwryl videahrikn eksklseivr
      301 efkttnrlll tgtplqnnlh elwallnfll pdvfnsaddf dswfdtkncl gdqklverlh
      361 avlkpfllrr ikgevekslp pkkevkiylg lskmqrewyt rilmkdidil nsagkmdkmr
      421 llnilmqlrk ccnhpylfdg aepgppyttd thlitnsgkm lvldkllakl reqgsrvllf
      481 sqmtrlldil edycmwrgye ycrldgqtph eereeaidtf napnsskfif mlstragglg
      541 inlatadvvi lydsdwnpqv dlqamdrahr igqkkpvrvf rlitdntvee riveraeikl
      601 rldsiviqqg rlidqqsnkl akdemlqmir hgathvfask dselteedis tilergekkt
      661 aemnerlqkm gesslrnftm dtemslynfe gedyrekqkl smmewieppk rerkanyavd
      721 ayfrealrvs epkipkaprp pkqpniqdfq ffpprlfell ekeilyyrkt igykvprnpd
      781 lpnaaqvqke eqkkidesmp lnteeseeke klltqgftnw nkrdfnqfik anekygrddi
      841 dniarevegk speevieysa vfwercnelq dierimaqie rgeariqrri sikkaldaki
      901 arykapfhql riqygtnkgk nyteeedrfl icmlhkmgfd kenvyeelrq cvrnapqfrf
      961 dwfiksrtam efqrrcntli sliekenmei eekeraekkk rgakvtasqk rkadlaaess
     1021 gkkdakkvks
//
LOCUS       XP_009557920             250 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-like protein family member 11A-like [Cuculus canorus].
ACCESSION   XP_009557920
VERSION     XP_009557920.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009559625.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..250
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..250
                     /product="ras-like protein family member 11A-like"
                     /calculated_mol_wt=28107
     Region          36..206
                     /region_name="RERG_RasL11_like"
                     /note="Ras-related and Estrogen-Regulated Growth inhibitor
                     (RERG) and Ras-like 11 (RasL11)-like families; cd04146"
                     /db_xref="CDD:206713"
     Site            41..48
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206713"
     Site            order(42..43,90..91)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206713"
     Site            order(44..49,62,155..156,158,185..187)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206713"
     Site            order(48..49,63,65,71..72,85..86,88,90..91,187)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206713"
     Site            order(64..67,70..72)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206713"
     Site            order(64..65,69..72)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206713"
     Site            66
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206713"
     Site            88..91
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206713"
     Site            order(90..91,105..116)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206713"
     Site            155..158
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206713"
     Site            185..187
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206713"
     CDS             1..250
                     /gene="LOC104058155"
                     /coded_by="XM_009559625.2:327..1079"
                     /db_xref="GeneID:104058155"
ORIGIN      
        1 mrlisqdtms qystnflllp ipeypvldcv pnkiiklvvl ggssvgktal vvrfltkrfi
       61 gdyeantgal ysrkftidge qislqvqdtp fvsleddtds iccqeqinrs iywadgfvfv
      121 ysitdyesyr virplhqhir kihpnanipl llmankgdll rarqvsskeg lqlaselggt
      181 yyevsarenc egvreafqql cqevsrmigs cngekrrglh lvrpkspnmq dlkrrlkqal
      241 tskgksattl
//
LOCUS       XP_053931163             250 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-like protein family member 11A-like [Cuculus canorus].
ACCESSION   XP_053931163
VERSION     XP_053931163.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075188.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..250
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..250
                     /product="ras-like protein family member 11A-like"
                     /calculated_mol_wt=28107
     Region          36..206
                     /region_name="RERG_RasL11_like"
                     /note="Ras-related and Estrogen-Regulated Growth inhibitor
                     (RERG) and Ras-like 11 (RasL11)-like families; cd04146"
                     /db_xref="CDD:206713"
     Site            41..48
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206713"
     Site            order(42..43,90..91)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206713"
     Site            order(44..49,62,155..156,158,185..187)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206713"
     Site            order(48..49,63,65,71..72,85..86,88,90..91,187)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206713"
     Site            order(64..67,70..72)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206713"
     Site            order(64..65,69..72)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206713"
     Site            66
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206713"
     Site            88..91
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206713"
     Site            order(90..91,105..116)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206713"
     Site            155..158
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206713"
     Site            185..187
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206713"
     CDS             1..250
                     /gene="LOC104058155"
                     /coded_by="XM_054075188.1:327..1079"
                     /db_xref="GeneID:104058155"
ORIGIN      
        1 mrlisqdtms qystnflllp ipeypvldcv pnkiiklvvl ggssvgktal vvrfltkrfi
       61 gdyeantgal ysrkftidge qislqvqdtp fvsleddtds iccqeqinrs iywadgfvfv
      121 ysitdyesyr virplhqhir kihpnanipl llmankgdll rarqvsskeg lqlaselggt
      181 yyevsarenc egvreafqql cqevsrmigs cngekrrglh lvrpkspnmq dlkrrlkqal
      241 tskgksattl
//
LOCUS       XP_053931164            1316 aa            linear   VRT 09-MAR-2023
DEFINITION  vascular endothelial growth factor receptor kdr-like isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931164
VERSION     XP_053931164.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075189.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1316
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1316
                     /product="vascular endothelial growth factor receptor
                     kdr-like isoform X1"
                     /calculated_mol_wt=148575
     Region          31..105
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     Region          228..320
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          242..246
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409448"
     Region          257..261
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409448"
     Region          285..289
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409448"
     Region          299..304
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409448"
     Region          311..314
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409448"
     Region          322..416
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          343..347
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409449"
     Region          356..360
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409449"
     Region          380..384
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409449"
     Region          394..399
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409449"
     Region          409..412
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409449"
     Region          441..445
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:143277"
     Region          442..538
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          454..458
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:143277"
     Region          506..510
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:143277"
     Region          518..523
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:143277"
     Region          531..534
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:143277"
     Region          549..636
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          559..563
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          572..576
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          599..603
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          613..618
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          642..727
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          659..663
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          672..676
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          693..697
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          707..712
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          720..723
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          799..1145
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(813..816,819,821,839,841,873,890..893,1006,
                     1010..1011,1013,1023..1024)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270681"
     CDS             1..1316
                     /gene="LOC104063997"
                     /coded_by="XM_054075189.1:692..4642"
                     /db_xref="GeneID:104063997"
ORIGIN      
        1 mvprvnaafv iyafqglllm qglaekgffe kptlnivkdh iillpgdtlk vkcrgapsvs
       61 wllsgrqked prvhisncrn ttrqncsilv irkvlandtg yftcihdghp snedlmakiy
      121 vfvkdyrnpf veihpehpei iyildskktv vvpcrvtspd ikpkltqyph svemnfkrmv
      181 wdprkgfvip shsfvysgll tctanvngsm ftsyylaqrl egraqnldlk atpkkllvge
      241 tlnlecraet fingrieliw tcpngrhpsp rrmidqsgtv ykvrssltie nvtmqdggly
      301 vcktfnvtrl eanvtvtvyd kpfitvshkk gpyyeitsgh kslklaakvd afpppsvawy
      361 kdgklikdnh tcyepdptky rlgirdvrpk hagnytivls nmeyglyknl tmqlvvtekp
      421 kiyeketdfd kiervelrsk hkiqctvsgn pdpkiewkwq pcsltdtlcn psgkkiavqe
      481 ntflgnkirs ienimvkhgd krkivstltm encsasgiyy cvasnkigee erhiefyvsd
      541 vpfglqtepq vttivgsdvw ltcrasryiy shlawfhpsa evahsdsvvk rtdnysislt
      601 liitnitkeq sglykcraqn qhnstdtleq htqllvraka apyviqnltd levnisgkii
      661 leckvsgtpe pqitwrknsy pilaasgism enntlvierv kkddeglyec rasndmgqds
      721 tsafikiqgs eeksnievii lvctglaatl fwllltlfir klrkpdatdi ktgylsiimd
      781 peempldeqc drlpydsskw efprdrlrlg ktlghgafgk vveasafgid ksstcktvav
      841 kmlkaecatt neckalmsel kilihighhl nvvnllgact kaggplmviv eyckygnlsn
      901 ylrgkrgdfi ayksqensdq aeksldesns dltelikrrl esvastgssa ssgfiedksy
      961 sdseddeeda edlykrpltl edlicysfqv akgmeflasr kcihrdlaar nillsennvv
     1021 kicdfglard iykdpdyvrk gdarlplkwm apeaifdkiy ttqsdvwsfg vllweifslg
     1081 aspypgvqid edfcrrlkeg trmrspeyst peiyqtmldc whgvpterpt ftelverlgd
     1141 llqanvqqdg kdyiplnitl cpdgepnskt cpveenlnnc vnrwsavetg dskkrplsvk
     1201 tfdevpveke kvmheesdsg mvltsdeiks pkrleirswp ygimalarra vskskesils
     1261 dhereavkyq pavqieedtm dftledsvll pmdpslechs pppdynsvih ysappv
//
LOCUS       XP_009564578            1315 aa            linear   VRT 09-MAR-2023
DEFINITION  vascular endothelial growth factor receptor kdr-like isoform X2
            [Cuculus canorus].
ACCESSION   XP_009564578
VERSION     XP_009564578.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566283.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564578.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1315
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1315
                     /product="vascular endothelial growth factor receptor
                     kdr-like isoform X2"
                     /calculated_mol_wt=148504
     Region          31..105
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     Region          228..320
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          242..246
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409448"
     Region          257..261
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409448"
     Region          285..289
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409448"
     Region          299..304
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409448"
     Region          311..314
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409448"
     Region          322..416
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          343..347
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409449"
     Region          356..360
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409449"
     Region          380..384
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409449"
     Region          394..399
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409449"
     Region          409..412
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409449"
     Region          441..445
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:143277"
     Region          442..538
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          454..458
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:143277"
     Region          506..510
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:143277"
     Region          518..523
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:143277"
     Region          531..534
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:143277"
     Region          549..636
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          559..563
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          572..576
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          599..603
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          613..618
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          642..727
                     /region_name="I-set"
                     /note="Immunoglobulin I-set domain; pfam07679"
                     /db_xref="CDD:400151"
     Region          659..663
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          672..676
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          693..697
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          707..712
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          720..723
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          799..1144
                     /region_name="Protein Kinases, catalytic domain"
                     /note="The protein kinase superfamily is mainly composed
                     of the catalytic domains of serine/threonine-specific and
                     tyrosine-specific protein kinases. It also includes RIO
                     kinases, which are atypical serine protein kinases,
                     aminoglycoside phosphotransferases; cl21453"
                     /db_xref="CDD:473864"
     Site            order(813..816,819,821,839,841,872,889..892,1005,
                     1009..1010,1012,1022..1023)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270681"
     CDS             1..1315
                     /gene="LOC104063997"
                     /coded_by="XM_009566283.2:692..4639"
                     /db_xref="GeneID:104063997"
ORIGIN      
        1 mvprvnaafv iyafqglllm qglaekgffe kptlnivkdh iillpgdtlk vkcrgapsvs
       61 wllsgrqked prvhisncrn ttrqncsilv irkvlandtg yftcihdghp snedlmakiy
      121 vfvkdyrnpf veihpehpei iyildskktv vvpcrvtspd ikpkltqyph svemnfkrmv
      181 wdprkgfvip shsfvysgll tctanvngsm ftsyylaqrl egraqnldlk atpkkllvge
      241 tlnlecraet fingrieliw tcpngrhpsp rrmidqsgtv ykvrssltie nvtmqdggly
      301 vcktfnvtrl eanvtvtvyd kpfitvshkk gpyyeitsgh kslklaakvd afpppsvawy
      361 kdgklikdnh tcyepdptky rlgirdvrpk hagnytivls nmeyglyknl tmqlvvtekp
      421 kiyeketdfd kiervelrsk hkiqctvsgn pdpkiewkwq pcsltdtlcn psgkkiavqe
      481 ntflgnkirs ienimvkhgd krkivstltm encsasgiyy cvasnkigee erhiefyvsd
      541 vpfglqtepq vttivgsdvw ltcrasryiy shlawfhpsa evahsdsvvk rtdnysislt
      601 liitnitkeq sglykcraqn qhnstdtleq htqllvraka apyviqnltd levnisgkii
      661 leckvsgtpe pqitwrknsy pilaasgism enntlvierv kkddeglyec rasndmgqds
      721 tsafikiqgs eeksnievii lvctglaatl fwllltlfir klrkpdatdi ktgylsiimd
      781 peempldeqc drlpydsskw efprdrlrlg ktlghgafgk vveasafgid ksstcktvav
      841 kmlkecattn eckalmselk ilihighhln vvnllgactk aggplmvive yckygnlsny
      901 lrgkrgdfia yksqensdqa eksldesnsd ltelikrrle svastgssas sgfiedksys
      961 dseddeedae dlykrpltle dlicysfqva kgmeflasrk cihrdlaarn illsennvvk
     1021 icdfglardi ykdpdyvrkg darlplkwma peaifdkiyt tqsdvwsfgv llweifslga
     1081 spypgvqide dfcrrlkegt rmrspeystp eiyqtmldcw hgvpterptf telverlgdl
     1141 lqanvqqdgk dyiplnitlc pdgepnsktc pveenlnncv nrwsavetgd skkrplsvkt
     1201 fdevpvekek vmheesdsgm vltsdeiksp krleirswpy gimalarrav skskesilsd
     1261 hereavkyqp avqieedtmd ftledsvllp mdpslechsp ppdynsvihy sappv
//
LOCUS       XP_053931166             523 aa            linear   VRT 09-MAR-2023
DEFINITION  rho guanine nucleotide exchange factor 9 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053931166
VERSION     XP_053931166.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075191.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..523
                     /product="rho guanine nucleotide exchange factor 9 isoform
                     X1"
                     /calculated_mol_wt=61491
     Region          14..75
                     /region_name="SH3_ARHGEF9"
                     /note="Src homology 3 domain of the Rho guanine nucleotide
                     exchange factor ARHGEF9; cd11975"
                     /db_xref="CDD:212908"
     Site            order(21..23,28..29,31,67)
                     /site_type="other"
                     /note="putative DH-PH interface [polypeptide binding]"
                     /db_xref="CDD:212908"
     Site            order(24,26,29,33,51..52,65,67..68)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212908"
     Region          114..293
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; smart00325"
                     /db_xref="CDD:214619"
     Site            order(117,121,216,243..244,247..248,250..251,254..255,
                     258..259,262,288,292)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          298..437
                     /region_name="PH_Collybistin_ASEF"
                     /note="Collybistin/APC-stimulated guanine nucleotide
                     exchange factor pleckstrin homology (PH) domain; cd01224"
                     /db_xref="CDD:269931"
     CDS             1..523
                     /gene="ARHGEF9"
                     /coded_by="XM_054075191.1:168..1739"
                     /db_xref="GeneID:104063991"
ORIGIN      
        1 msegklpkih lisggsivsa eavwdhvtma nrelafkagd vikvldasnk dwwwgqidde
       61 egwfpasfvr lwvnqedgve egtsdvqngh ldpsadclcl grtvqnrdqm ranvineims
      121 terhyikhlk dicegylkqc rkrrdmfsde qlkiifgnie diyrfqmgfv rdlekqynne
      181 dphlseigpc flehqdgfwi yseycnnhld acmelsklmk dsryqhffea crllqqmidi
      241 aidgflltpv qkickyplql aellkytaqd hsdyryvaaa lavmrnvtlq inerkrrlen
      301 idkiaqwqas vldwegddil drsseliytg emswiyqpyg rnqqrvfflf dhqmvlckkd
      361 lirrdilyyk gridmdkyev vdiedgrddd fnvsmknafk lhnketeemh lffakkleek
      421 lrwlrafree rkmvkedeki gfeisenqkr qaamtvkkvs kqkgvsysks vppaypppqd
      481 plnqgqymvt dgisqsqvfe fteprrsqap fwqnfsrltp fkk
//
LOCUS       XP_053931167             518 aa            linear   VRT 09-MAR-2023
DEFINITION  rho guanine nucleotide exchange factor 9 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053931167
VERSION     XP_053931167.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075192.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..518
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..518
                     /product="rho guanine nucleotide exchange factor 9 isoform
                     X2"
                     /calculated_mol_wt=60905
     Region          14..75
                     /region_name="SH3_ARHGEF9"
                     /note="Src homology 3 domain of the Rho guanine nucleotide
                     exchange factor ARHGEF9; cd11975"
                     /db_xref="CDD:212908"
     Site            order(21..23,28..29,31,67)
                     /site_type="other"
                     /note="putative DH-PH interface [polypeptide binding]"
                     /db_xref="CDD:212908"
     Site            order(24,26,29,33,51..52,65,67..68)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212908"
     Region          114..293
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; smart00325"
                     /db_xref="CDD:214619"
     Site            order(117,121,216,243..244,247..248,250..251,254..255,
                     258..259,262,288,292)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          298..437
                     /region_name="PH_Collybistin_ASEF"
                     /note="Collybistin/APC-stimulated guanine nucleotide
                     exchange factor pleckstrin homology (PH) domain; cd01224"
                     /db_xref="CDD:269931"
     CDS             1..518
                     /gene="ARHGEF9"
                     /coded_by="XM_054075192.1:168..1724"
                     /db_xref="GeneID:104063991"
ORIGIN      
        1 msegklpkih lisggsivsa eavwdhvtma nrelafkagd vikvldasnk dwwwgqidde
       61 egwfpasfvr lwvnqedgve egtsdvqngh ldpsadclcl grtvqnrdqm ranvineims
      121 terhyikhlk dicegylkqc rkrrdmfsde qlkiifgnie diyrfqmgfv rdlekqynne
      181 dphlseigpc flehqdgfwi yseycnnhld acmelsklmk dsryqhffea crllqqmidi
      241 aidgflltpv qkickyplql aellkytaqd hsdyryvaaa lavmrnvtlq inerkrrlen
      301 idkiaqwqas vldwegddil drsseliytg emswiyqpyg rnqqrvfflf dhqmvlckkd
      361 lirrdilyyk gridmdkyev vdiedgrddd fnvsmknafk lhnketeemh lffakkleek
      421 lrwlrafree rkmvkedeki gfeisenqkr qaamtvkkvs kqkgvsysks vppaypppqd
      481 plnqgqymvt dgisqsqvfe fteprrsqap fwqnfsre
//
LOCUS       XP_053931168             516 aa            linear   VRT 09-MAR-2023
DEFINITION  rho guanine nucleotide exchange factor 9 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053931168
VERSION     XP_053931168.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075193.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..516
                     /product="rho guanine nucleotide exchange factor 9 isoform
                     X3"
                     /calculated_mol_wt=60715
     Region          7..68
                     /region_name="SH3_ARHGEF9"
                     /note="Src homology 3 domain of the Rho guanine nucleotide
                     exchange factor ARHGEF9; cd11975"
                     /db_xref="CDD:212908"
     Site            order(14..16,21..22,24,60)
                     /site_type="other"
                     /note="putative DH-PH interface [polypeptide binding]"
                     /db_xref="CDD:212908"
     Site            order(17,19,22,26,44..45,58,60..61)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212908"
     Region          107..286
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; smart00325"
                     /db_xref="CDD:214619"
     Site            order(110,114,209,236..237,240..241,243..244,247..248,
                     251..252,255,281,285)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          291..430
                     /region_name="PH_Collybistin_ASEF"
                     /note="Collybistin/APC-stimulated guanine nucleotide
                     exchange factor pleckstrin homology (PH) domain; cd01224"
                     /db_xref="CDD:269931"
     CDS             1..516
                     /gene="ARHGEF9"
                     /coded_by="XM_054075193.1:135..1685"
                     /db_xref="GeneID:104063991"
ORIGIN      
        1 mtllisggsi vsaeavwdhv tmanrelafk agdvikvlda snkdwwwgqi ddeegwfpas
       61 fvrlwvnqed gveegtsdvq nghldpsadc lclgrtvqnr dqmranvine imsterhyik
      121 hlkdicegyl kqcrkrrdmf sdeqlkiifg niediyrfqm gfvrdlekqy nnedphlsei
      181 gpcflehqdg fwiyseycnn hldacmelsk lmkdsryqhf feacrllqqm idiaidgfll
      241 tpvqkickyp lqlaellkyt aqdhsdyryv aaalavmrnv tlqinerkrr lenidkiaqw
      301 qasvldwegd dildrsseli ytgemswiyq pygrnqqrvf flfdhqmvlc kkdlirrdil
      361 yykgridmdk yevvdiedgr dddfnvsmkn afklhnkete emhlffakkl eeklrwlraf
      421 reerkmvked ekigfeisen qkrqaamtvk kvskqkgvsy sksvppaypp pqdplnqgqy
      481 mvtdgisqsq vfefteprrs qapfwqnfsr ltpfkk
//
LOCUS       XP_053931169             516 aa            linear   VRT 09-MAR-2023
DEFINITION  rho guanine nucleotide exchange factor 9 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053931169
VERSION     XP_053931169.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075194.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..516
                     /product="rho guanine nucleotide exchange factor 9 isoform
                     X4"
                     /calculated_mol_wt=60779
     Region          7..68
                     /region_name="SH3_ARHGEF9"
                     /note="Src homology 3 domain of the Rho guanine nucleotide
                     exchange factor ARHGEF9; cd11975"
                     /db_xref="CDD:212908"
     Site            order(14..16,21..22,24,60)
                     /site_type="other"
                     /note="putative DH-PH interface [polypeptide binding]"
                     /db_xref="CDD:212908"
     Site            order(17,19,22,26,44..45,58,60..61)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212908"
     Region          107..286
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; smart00325"
                     /db_xref="CDD:214619"
     Site            order(110,114,209,236..237,240..241,243..244,247..248,
                     251..252,255,281,285)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          291..430
                     /region_name="PH_Collybistin_ASEF"
                     /note="Collybistin/APC-stimulated guanine nucleotide
                     exchange factor pleckstrin homology (PH) domain; cd01224"
                     /db_xref="CDD:269931"
     CDS             1..516
                     /gene="ARHGEF9"
                     /coded_by="XM_054075194.1:126..1676"
                     /db_xref="GeneID:104063991"
ORIGIN      
        1 mydlisggsi vsaeavwdhv tmanrelafk agdvikvlda snkdwwwgqi ddeegwfpas
       61 fvrlwvnqed gveegtsdvq nghldpsadc lclgrtvqnr dqmranvine imsterhyik
      121 hlkdicegyl kqcrkrrdmf sdeqlkiifg niediyrfqm gfvrdlekqy nnedphlsei
      181 gpcflehqdg fwiyseycnn hldacmelsk lmkdsryqhf feacrllqqm idiaidgfll
      241 tpvqkickyp lqlaellkyt aqdhsdyryv aaalavmrnv tlqinerkrr lenidkiaqw
      301 qasvldwegd dildrsseli ytgemswiyq pygrnqqrvf flfdhqmvlc kkdlirrdil
      361 yykgridmdk yevvdiedgr dddfnvsmkn afklhnkete emhlffakkl eeklrwlraf
      421 reerkmvked ekigfeisen qkrqaamtvk kvskqkgvsy sksvppaypp pqdplnqgqy
      481 mvtdgisqsq vfefteprrs qapfwqnfsr ltpfkk
//
LOCUS       XP_009564573             495 aa            linear   VRT 09-MAR-2023
DEFINITION  rho guanine nucleotide exchange factor 9 isoform X5 [Cuculus
            canorus].
ACCESSION   XP_009564573
VERSION     XP_009564573.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566278.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..495
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..495
                     /product="rho guanine nucleotide exchange factor 9 isoform
                     X5"
                     /calculated_mol_wt=58547
     Region          <1..47
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Region          86..265
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; smart00325"
                     /db_xref="CDD:214619"
     Site            order(89,93,188,215..216,219..220,222..223,226..227,
                     230..231,234,260,264)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          270..409
                     /region_name="PH_Collybistin_ASEF"
                     /note="Collybistin/APC-stimulated guanine nucleotide
                     exchange factor pleckstrin homology (PH) domain; cd01224"
                     /db_xref="CDD:269931"
     CDS             1..495
                     /gene="ARHGEF9"
                     /coded_by="XM_009566278.2:193..1680"
                     /db_xref="GeneID:104063991"
ORIGIN      
        1 manrelafka gdvikvldas nkdwwwgqid deegwfpasf vrlwvnqedg veegtsdvqn
       61 ghldpsadcl clgrtvqnrd qmranvinei msterhyikh lkdicegylk qcrkrrdmfs
      121 deqlkiifgn iediyrfqmg fvrdlekqyn nedphlseig pcflehqdgf wiyseycnnh
      181 ldacmelskl mkdsryqhff eacrllqqmi diaidgfllt pvqkickypl qlaellkyta
      241 qdhsdyryva aalavmrnvt lqinerkrrl enidkiaqwq asvldwegdd ildrsseliy
      301 tgemswiyqp ygrnqqrvff lfdhqmvlck kdlirrdily ykgridmdky evvdiedgrd
      361 ddfnvsmkna fklhnketee mhlffakkle eklrwlrafr eerkmvkede kigfeisenq
      421 krqaamtvkk vskqkgvsys ksvppayppp qdplnqgqym vtdgisqsqv fefteprrsq
      481 apfwqnfsrl tpfkk
//
LOCUS       XP_053931170             495 aa            linear   VRT 09-MAR-2023
DEFINITION  rho guanine nucleotide exchange factor 9 isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053931170
VERSION     XP_053931170.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075195.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..495
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..495
                     /product="rho guanine nucleotide exchange factor 9 isoform
                     X5"
                     /calculated_mol_wt=58547
     Region          <1..47
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Region          86..265
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; smart00325"
                     /db_xref="CDD:214619"
     Site            order(89,93,188,215..216,219..220,222..223,226..227,
                     230..231,234,260,264)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          270..409
                     /region_name="PH_Collybistin_ASEF"
                     /note="Collybistin/APC-stimulated guanine nucleotide
                     exchange factor pleckstrin homology (PH) domain; cd01224"
                     /db_xref="CDD:269931"
     CDS             1..495
                     /gene="ARHGEF9"
                     /coded_by="XM_054075195.1:197..1684"
                     /db_xref="GeneID:104063991"
ORIGIN      
        1 manrelafka gdvikvldas nkdwwwgqid deegwfpasf vrlwvnqedg veegtsdvqn
       61 ghldpsadcl clgrtvqnrd qmranvinei msterhyikh lkdicegylk qcrkrrdmfs
      121 deqlkiifgn iediyrfqmg fvrdlekqyn nedphlseig pcflehqdgf wiyseycnnh
      181 ldacmelskl mkdsryqhff eacrllqqmi diaidgfllt pvqkickypl qlaellkyta
      241 qdhsdyryva aalavmrnvt lqinerkrrl enidkiaqwq asvldwegdd ildrsseliy
      301 tgemswiyqp ygrnqqrvff lfdhqmvlck kdlirrdily ykgridmdky evvdiedgrd
      361 ddfnvsmkna fklhnketee mhlffakkle eklrwlrafr eerkmvkede kigfeisenq
      421 krqaamtvkk vskqkgvsys ksvppayppp qdplnqgqym vtdgisqsqv fefteprrsq
      481 apfwqnfsrl tpfkk
//
LOCUS       XP_053931171             495 aa            linear   VRT 09-MAR-2023
DEFINITION  rho guanine nucleotide exchange factor 9 isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053931171
VERSION     XP_053931171.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075196.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..495
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..495
                     /product="rho guanine nucleotide exchange factor 9 isoform
                     X5"
                     /calculated_mol_wt=58547
     Region          <1..47
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Region          86..265
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; smart00325"
                     /db_xref="CDD:214619"
     Site            order(89,93,188,215..216,219..220,222..223,226..227,
                     230..231,234,260,264)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          270..409
                     /region_name="PH_Collybistin_ASEF"
                     /note="Collybistin/APC-stimulated guanine nucleotide
                     exchange factor pleckstrin homology (PH) domain; cd01224"
                     /db_xref="CDD:269931"
     CDS             1..495
                     /gene="ARHGEF9"
                     /coded_by="XM_054075196.1:159..1646"
                     /db_xref="GeneID:104063991"
ORIGIN      
        1 manrelafka gdvikvldas nkdwwwgqid deegwfpasf vrlwvnqedg veegtsdvqn
       61 ghldpsadcl clgrtvqnrd qmranvinei msterhyikh lkdicegylk qcrkrrdmfs
      121 deqlkiifgn iediyrfqmg fvrdlekqyn nedphlseig pcflehqdgf wiyseycnnh
      181 ldacmelskl mkdsryqhff eacrllqqmi diaidgfllt pvqkickypl qlaellkyta
      241 qdhsdyryva aalavmrnvt lqinerkrrl enidkiaqwq asvldwegdd ildrsseliy
      301 tgemswiyqp ygrnqqrvff lfdhqmvlck kdlirrdily ykgridmdky evvdiedgrd
      361 ddfnvsmkna fklhnketee mhlffakkle eklrwlrafr eerkmvkede kigfeisenq
      421 krqaamtvkk vskqkgvsys ksvppayppp qdplnqgqym vtdgisqsqv fefteprrsq
      481 apfwqnfsrl tpfkk
//
LOCUS       XP_053931172             483 aa            linear   VRT 09-MAR-2023
DEFINITION  rho guanine nucleotide exchange factor 9 isoform X6 [Cuculus
            canorus].
ACCESSION   XP_053931172
VERSION     XP_053931172.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075197.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..483
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..483
                     /product="rho guanine nucleotide exchange factor 9 isoform
                     X6"
                     /calculated_mol_wt=57068
     Region          14..75
                     /region_name="SH3_ARHGEF9"
                     /note="Src homology 3 domain of the Rho guanine nucleotide
                     exchange factor ARHGEF9; cd11975"
                     /db_xref="CDD:212908"
     Site            order(21..23,28..29,31,67)
                     /site_type="other"
                     /note="putative DH-PH interface [polypeptide binding]"
                     /db_xref="CDD:212908"
     Site            order(24,26,29,33,51..52,65,67..68)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212908"
     Region          114..293
                     /region_name="RhoGEF"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; smart00325"
                     /db_xref="CDD:214619"
     Site            order(117,121,216,243..244,247..248,250..251,254..255,
                     258..259,262,288,292)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238091"
     Region          298..437
                     /region_name="PH_Collybistin_ASEF"
                     /note="Collybistin/APC-stimulated guanine nucleotide
                     exchange factor pleckstrin homology (PH) domain; cd01224"
                     /db_xref="CDD:269931"
     CDS             1..483
                     /gene="ARHGEF9"
                     /coded_by="XM_054075197.1:168..1619"
                     /db_xref="GeneID:104063991"
ORIGIN      
        1 msegklpkih lisggsivsa eavwdhvtma nrelafkagd vikvldasnk dwwwgqidde
       61 egwfpasfvr lwvnqedgve egtsdvqngh ldpsadclcl grtvqnrdqm ranvineims
      121 terhyikhlk dicegylkqc rkrrdmfsde qlkiifgnie diyrfqmgfv rdlekqynne
      181 dphlseigpc flehqdgfwi yseycnnhld acmelsklmk dsryqhffea crllqqmidi
      241 aidgflltpv qkickyplql aellkytaqd hsdyryvaaa lavmrnvtlq inerkrrlen
      301 idkiaqwqas vldwegddil drsseliytg emswiyqpyg rnqqrvfflf dhqmvlckkd
      361 lirrdilyyk gridmdkyev vdiedgrddd fnvsmknafk lhnketeemh lffakkleek
      421 lrwlrafree rkmvkedeki gfeisenqkr qaamtvkkvs kqkesenets iifmrrcfls
      481 iqh
//
LOCUS       XP_009564577             276 aa            linear   VRT 09-MAR-2023
DEFINITION  homeobox protein CDX-4 [Cuculus canorus].
ACCESSION   XP_009564577
VERSION     XP_009564577.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566282.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..276
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..276
                     /product="homeobox protein CDX-4"
                     /calculated_mol_wt=30619
     Region          13..144
                     /region_name="Caudal_act"
                     /note="Caudal like protein activation region; pfam04731"
                     /db_xref="CDD:461413"
     Region          151..206
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     CDS             1..276
                     /gene="LOC104063995"
                     /coded_by="XM_009566282.2:1..831"
                     /db_xref="GeneID:104063995"
ORIGIN      
        1 myvsylldke tsmypgsarg nsnlpvqnfv stpaysdymg yhhvptldah gqpagawgsh
       61 ygpqredwna ygpgpsstva aaqlngsppa qvsyssadys slhpagaggl ppvetinaqq
      121 ispssqrhss yewmrktvqs tstgktrtre kyrvvytdhq rlelekefhy nryitirrks
      181 elaanlrlse rqvkiwfqnr rakerklmkk kmthfdgsnl asmqsdsgsv spmpvpdqqt
      241 hsempsslft pppppaplpm nglqhngnlq qvvasq
//
LOCUS       XP_053931173             807 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 711 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931173
VERSION     XP_053931173.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075198.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..807
                     /product="zinc finger protein 711 isoform X1"
                     /calculated_mol_wt=90648
     Region          65..414
                     /region_name="Zfx_Zfy_act"
                     /note="Zfx / Zfy transcription activation region;
                     pfam04704"
                     /db_xref="CDD:461400"
     Region          <422..599
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          431..451
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          524..545
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(529,531,533,535..536,539..540,544,558,560,564..565,
                     568..569,572,586,588,590,592..593,596..597,600)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          546..>803
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          553..573
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          581..600
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          610..626
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          638..659
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          667..687
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          724..744
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(729,731,733,735..736,739..740,743,757,759,763..764,
                     767..768,772,786,788,790,792..793,796..797,800)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          752..773
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          781..801
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..807
                     /gene="ZNF711"
                     /coded_by="XM_054075198.1:166..2589"
                     /db_xref="GeneID:104054281"
ORIGIN      
        1 mdpgggslgl qtqeskmpht mimqdfvagm agtahidgdh ivvsvpeavl vsdvvtddgi
       61 tldhglaaev vqgpdiitet dvvtegvivp dsvleadvai eealdtsdhv ltsdlitetv
      121 rvpdqvfvad lvtgpdghle hvvqdsvsga nsptmvseev lvtnsdseav iqaagsvpgs
      181 tvtiktednd dgkstsedyl mislddvgek ldhigntplk istevtndev akddgfgsev
      241 ikvyifkaea eddveiggte ivtesdfhng hsvagvieqg gvgrmqrekm vymavkdssq
      301 edediscaei adevymeviv geeeatslpd tqvedagvnk tfvpvawaaa ygderrlprr
      361 yedgqtagnn ldtrlenkng natqylqicd sistnrvlkq kakkrrrgea rqwqtaviig
      421 pdgqpltvyp chicgkkfks rgflkrhmkn hpdhmikkky qctdcdfttn kkvsfhnhle
      481 shklinkvek thefteytrr yreasplssn klilrdkepk lhkckycdye taeqgllnrh
      541 llavhsknfp hvcvecgkgf rhpselkkhm rthtgekpyq cqhcvfrcsd qsnlkthikt
      601 khgtdlpfkc ehcpqafade kelqqhtelf qghkthqcph cdhkstnssd lkrhiisvht
      661 kdfphkcevc ekgfhrpsel kkhsethkgk kihqcrhcdf ktsdpfvlsg hilsvhtkdl
      721 pfkckrckrg frqqnelkkh mkthsgrkvy qcqyceystt dasgfkrhvi sihtkdyphr
      781 ceyckkgfrr pseknqhimr hhkeaim
//
LOCUS       XP_053931174             807 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 711 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931174
VERSION     XP_053931174.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075199.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..807
                     /product="zinc finger protein 711 isoform X1"
                     /calculated_mol_wt=90648
     Region          65..414
                     /region_name="Zfx_Zfy_act"
                     /note="Zfx / Zfy transcription activation region;
                     pfam04704"
                     /db_xref="CDD:461400"
     Region          <422..599
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          431..451
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          524..545
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(529,531,533,535..536,539..540,544,558,560,564..565,
                     568..569,572,586,588,590,592..593,596..597,600)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          546..>803
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          553..573
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          581..600
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          610..626
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          638..659
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          667..687
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          724..744
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(729,731,733,735..736,739..740,743,757,759,763..764,
                     767..768,772,786,788,790,792..793,796..797,800)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          752..773
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          781..801
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..807
                     /gene="ZNF711"
                     /coded_by="XM_054075199.1:427..2850"
                     /db_xref="GeneID:104054281"
ORIGIN      
        1 mdpgggslgl qtqeskmpht mimqdfvagm agtahidgdh ivvsvpeavl vsdvvtddgi
       61 tldhglaaev vqgpdiitet dvvtegvivp dsvleadvai eealdtsdhv ltsdlitetv
      121 rvpdqvfvad lvtgpdghle hvvqdsvsga nsptmvseev lvtnsdseav iqaagsvpgs
      181 tvtiktednd dgkstsedyl mislddvgek ldhigntplk istevtndev akddgfgsev
      241 ikvyifkaea eddveiggte ivtesdfhng hsvagvieqg gvgrmqrekm vymavkdssq
      301 edediscaei adevymeviv geeeatslpd tqvedagvnk tfvpvawaaa ygderrlprr
      361 yedgqtagnn ldtrlenkng natqylqicd sistnrvlkq kakkrrrgea rqwqtaviig
      421 pdgqpltvyp chicgkkfks rgflkrhmkn hpdhmikkky qctdcdfttn kkvsfhnhle
      481 shklinkvek thefteytrr yreasplssn klilrdkepk lhkckycdye taeqgllnrh
      541 llavhsknfp hvcvecgkgf rhpselkkhm rthtgekpyq cqhcvfrcsd qsnlkthikt
      601 khgtdlpfkc ehcpqafade kelqqhtelf qghkthqcph cdhkstnssd lkrhiisvht
      661 kdfphkcevc ekgfhrpsel kkhsethkgk kihqcrhcdf ktsdpfvlsg hilsvhtkdl
      721 pfkckrckrg frqqnelkkh mkthsgrkvy qcqyceystt dasgfkrhvi sihtkdyphr
      781 ceyckkgfrr pseknqhimr hhkeaim
//
LOCUS       XP_053931175             778 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 711 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931175
VERSION     XP_053931175.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075200.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..778
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..778
                     /product="zinc finger protein 711 isoform X2"
                     /calculated_mol_wt=87601
     Region          36..385
                     /region_name="Zfx_Zfy_act"
                     /note="Zfx / Zfy transcription activation region;
                     pfam04704"
                     /db_xref="CDD:461400"
     Region          <393..570
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          402..422
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          495..516
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(500,502,504,506..507,510..511,515,529,531,535..536,
                     539..540,543,557,559,561,563..564,567..568,571)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          517..>774
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          524..544
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          552..571
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          581..597
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          609..630
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          638..658
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          695..715
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(700,702,704,706..707,710..711,714,728,730,734..735,
                     738..739,743,757,759,761,763..764,767..768,771)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          723..744
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          752..772
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..778
                     /gene="ZNF711"
                     /coded_by="XM_054075200.1:148..2484"
                     /db_xref="GeneID:104054281"
ORIGIN      
        1 magtahidgd hivvsvpeav lvsdvvtddg itldhglaae vvqgpdiite tdvvtegviv
       61 pdsvleadva ieealdtsdh vltsdlitet vrvpdqvfva dlvtgpdghl ehvvqdsvsg
      121 ansptmvsee vlvtnsdsea viqaagsvpg stvtiktedn ddgkstsedy lmislddvge
      181 kldhigntpl kistevtnde vakddgfgse vikvyifkae aeddveiggt eivtesdfhn
      241 ghsvagvieq ggvgrmqrek mvymavkdss qedediscae iadevymevi vgeeeatslp
      301 dtqvedagvn ktfvpvawaa aygderrlpr ryedgqtagn nldtrlenkn gnatqylqic
      361 dsistnrvlk qkakkrrrge arqwqtavii gpdgqpltvy pchicgkkfk srgflkrhmk
      421 nhpdhmikkk yqctdcdftt nkkvsfhnhl eshklinkve kthefteytr ryreasplss
      481 nklilrdkep klhkckycdy etaeqgllnr hllavhsknf phvcvecgkg frhpselkkh
      541 mrthtgekpy qcqhcvfrcs dqsnlkthik tkhgtdlpfk cehcpqafad ekelqqhtel
      601 fqghkthqcp hcdhkstnss dlkrhiisvh tkdfphkcev cekgfhrpse lkkhsethkg
      661 kkihqcrhcd fktsdpfvls ghilsvhtkd lpfkckrckr gfrqqnelkk hmkthsgrkv
      721 yqcqyceyst tdasgfkrhv isihtkdyph rceyckkgfr rpseknqhim rhhkeaim
//
LOCUS       XP_053931176             771 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 711 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931176
VERSION     XP_053931176.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075201.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..771
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..771
                     /product="zinc finger protein 711 isoform X3"
                     /calculated_mol_wt=86432
     Region          65..380
                     /region_name="Zfx_Zfy_act"
                     /note="Zfx / Zfy transcription activation region;
                     pfam04704"
                     /db_xref="CDD:461400"
     Region          <386..563
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          395..415
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          488..509
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(493,495,497,499..500,503..504,508,522,524,528..529,
                     532..533,536,550,552,554,556..557,560..561,564)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          510..>767
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          517..537
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          545..564
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          574..590
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          602..623
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          631..651
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          688..708
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(693,695,697,699..700,703..704,707,721,723,727..728,
                     731..732,736,750,752,754,756..757,760..761,764)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          716..737
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          745..765
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..771
                     /gene="ZNF711"
                     /coded_by="XM_054075201.1:166..2481"
                     /db_xref="GeneID:104054281"
ORIGIN      
        1 mdpgggslgl qtqeskmpht mimqdfvagm agtahidgdh ivvsvpeavl vsdvvtddgi
       61 tldhglaaev vqgpdiitet dvvtegvivp dsvleadvai eealdtsdhv ltsdlitetv
      121 rvpdqvfvad lvtgpdghle hvvqdsvsga nsptmvseev lvtnsdseav iqaagsvpgs
      181 tvtiktednd dgkstsedyl mislddvgek ldhigntplk istevtndev akddgfgsev
      241 ikvyifkaea eddveiggte ivtesdfhng hsvagvieqg gvgrmqrekm vymavkdssq
      301 edediscaei adevymeviv geeeatslpd tqvedagvnk tfvpvawaaa ygderrlprr
      361 yedgqtagnn ldtrlenkna viigpdgqpl tvypchicgk kfksrgflkr hmknhpdhmi
      421 kkkyqctdcd fttnkkvsfh nhleshklin kvekthefte ytrryreasp lssnklilrd
      481 kepklhkcky cdyetaeqgl lnrhllavhs knfphvcvec gkgfrhpsel kkhmrthtge
      541 kpyqcqhcvf rcsdqsnlkt hiktkhgtdl pfkcehcpqa fadekelqqh telfqghkth
      601 qcphcdhkst nssdlkrhii svhtkdfphk cevcekgfhr pselkkhset hkgkkihqcr
      661 hcdfktsdpf vlsghilsvh tkdlpfkckr ckrgfrqqne lkkhmkthsg rkvyqcqyce
      721 ysttdasgfk rhvisihtkd yphrceyckk gfrrpseknq himrhhkeai m
//
LOCUS       XP_053931177             630 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 711 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931177
VERSION     XP_053931177.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075202.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..630
                     /product="zinc finger protein 711 isoform X4"
                     /calculated_mol_wt=72618
     Region          <29..237
                     /region_name="Zfx_Zfy_act"
                     /note="Zfx / Zfy transcription activation region;
                     pfam04704"
                     /db_xref="CDD:461400"
     Region          252..274
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          254..274
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          347..368
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(352,354,356,358..359,362..363,367,381,383,387..388,
                     391..392,395,409,411,413,415..416,419..420,423)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          369..>615
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          376..396
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          404..423
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          433..449
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          461..482
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          490..510
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          547..567
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(552,554,556,558..559,562..563,566,580,582,586..587,
                     590..591,595,609,611,613,615..616,619..620,623)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          575..596
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          604..624
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..630
                     /gene="ZNF711"
                     /coded_by="XM_054075202.1:215..2107"
                     /db_xref="GeneID:104054281"
ORIGIN      
        1 mlrhhmnwel aihgesghht penskpvddv gekldhignt plkistevtn devakddgfg
       61 sevikvyifk aeaeddveig gteivtesdf hnghsvagvi eqggvgrmqr ekmvymavkd
      121 ssqededisc aeiadevyme vivgeeeats lpdtqvedag vnktfvpvaw aaaygderrl
      181 prryedgqta gnnldtrlen kngnatqylq icdsistnrv lkqkakkrrr gearqwqtav
      241 iigpdgqplt vypchicgkk fksrgflkrh mknhpdhmik kkyqctdcdf ttnkkvsfhn
      301 hleshklink vektheftey trryreaspl ssnklilrdk epklhkckyc dyetaeqgll
      361 nrhllavhsk nfphvcvecg kgfrhpselk khmrthtgek pyqcqhcvfr csdqsnlkth
      421 iktkhgtdlp fkcehcpqaf adekelqqht elfqghkthq cphcdhkstn ssdlkrhiis
      481 vhtkdfphkc evcekgfhrp selkkhseth kgkkihqcrh cdfktsdpfv lsghilsvht
      541 kdlpfkckrc krgfrqqnel kkhmkthsgr kvyqcqycey sttdasgfkr hvisihtkdy
      601 phrceyckkg frrpseknqh imrhhkeaim
//
LOCUS       XP_053931178             624 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 711 isoform X5 [Cuculus canorus].
ACCESSION   XP_053931178
VERSION     XP_053931178.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075203.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..624
                     /product="zinc finger protein 711 isoform X5"
                     /calculated_mol_wt=71877
     Region          <21..231
                     /region_name="Zfx_Zfy_act"
                     /note="Zfx / Zfy transcription activation region;
                     pfam04704"
                     /db_xref="CDD:461400"
     Region          <247..416
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          248..268
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          341..362
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(346,348,350,352..353,356..357,361,375,377,381..382,
                     385..386,389,403,405,407,409..410,413..414,417)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          363..>609
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          370..390
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          398..417
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          427..443
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          455..476
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          484..504
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          541..561
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(546,548,550,552..553,556..557,560,574,576,580..581,
                     584..585,589,603,605,607,609..610,613..614,617)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          569..590
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          598..618
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..624
                     /gene="ZNF711"
                     /coded_by="XM_054075203.1:132..2006"
                     /db_xref="GeneID:104054281"
ORIGIN      
        1 mgcvmghilc lrcfqlhlcn lddvgekldh igntplkist evtndevakd dgfgsevikv
       61 yifkaeaedd veiggteivt esdfhnghsv agvieqggvg rmqrekmvym avkdssqede
      121 discaeiade vymevivgee eatslpdtqv edagvnktfv pvawaaaygd errlprryed
      181 gqtagnnldt rlenkngnat qylqicdsis tnrvlkqkak krrrgearqw qtaviigpdg
      241 qpltvypchi cgkkfksrgf lkrhmknhpd hmikkkyqct dcdfttnkkv sfhnhleshk
      301 linkvekthe fteytrryre asplssnkli lrdkepklhk ckycdyetae qgllnrhlla
      361 vhsknfphvc vecgkgfrhp selkkhmrth tgekpyqcqh cvfrcsdqsn lkthiktkhg
      421 tdlpfkcehc pqafadekel qqhtelfqgh kthqcphcdh kstnssdlkr hiisvhtkdf
      481 phkcevcekg fhrpselkkh sethkgkkih qcrhcdfkts dpfvlsghil svhtkdlpfk
      541 ckrckrgfrq qnelkkhmkt hsgrkvyqcq yceysttdas gfkrhvisih tkdyphrcey
      601 ckkgfrrpse knqhimrhhk eaim
//
LOCUS       XP_053931179             491 aa            linear   VRT 09-MAR-2023
DEFINITION  protein POF1B [Cuculus canorus].
ACCESSION   XP_053931179
VERSION     XP_053931179.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075204.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..491
                     /product="protein POF1B"
                     /calculated_mol_wt=56434
     Region          <244..>429
                     /region_name="SMC_N"
                     /note="RecF/RecN/SMC N terminal domain; cl47134"
                     /db_xref="CDD:481474"
     CDS             1..491
                     /gene="POF1B"
                     /coded_by="XM_054075204.1:52..1527"
                     /db_xref="GeneID:104054313"
ORIGIN      
        1 mlgvpqqqrc prradpepga afdrvrtygp gcrdtagdtg tirriiienp dqeplspflr
       61 ggsfcpgnni iyektirkye llnpsqerqy qfsqqaepch vaqpveqpqv trqcqqtqtg
      121 spceinpvav sddcrgntvr rvtvqtcepv ncsqenndql dcryfgella elnrksndly
      181 scllqhveki ggrnqdiefs yqteeienli pkglseatkq qiryllqmrv tsdkslrlvl
      241 stfknlreel chlqddlgkl etdnlllkkd lafkdsqvke yenllaslre nnrqqqqglr
      301 estarcrsle eqllslrlse gekdcqlkel eyckraleqe mqslrlqacs spalqtttde
      361 lssryvemin nlredkdrei rnlraqlcqf qqdisrregs nsdlqirlqe ltsmleekea
      421 fikqqqedlf rlkhdklsgs pspgvttvit kkyrnqypil gllsddykvt spvnksetiv
      481 iertgeiwkq e
//
LOCUS       XP_009560773             371 aa            linear   VRT 09-MAR-2023
DEFINITION  muscleblind-like protein 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_009560773
VERSION     XP_009560773.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009562478.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..371
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..371
                     /product="muscleblind-like protein 3 isoform X1"
                     /calculated_mol_wt=40155
     Region          17..39
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     Region          178..202
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     CDS             1..371
                     /gene="MBNL3"
                     /coded_by="XM_009562478.2:962..2077"
                     /db_xref="GeneID:104060666"
ORIGIN      
        1 mavnvslvrd tkwltlevcr efqrgtcsrs daeckfahps rschvengrv iacfdslkgr
       61 ctrenckylh ppphlktqle ingrnnliqq ktaaamfaqq mqfmlpgaql qpittfpvtp
      121 slatsptmaf spylshvspg mglvpaellp ntpvlvsgnp tvtvpggsag qklmrtdkle
      181 vcrefqrgnc trgendcrya hpidiamidt nentvtvcmd yikgrcsrek ckyfhppahl
      241 qakikaaqhq vnqtaaaama lppgalqplp krpaleknng attvfnpsvf hyqqalanmq
      301 lqqptfiptg svlcmtptas vvpmmhgatp ttvsaattpa tsvpfaatat anqisqlsvd
      361 elsssmfvsq m
//
LOCUS       XP_053931180             371 aa            linear   VRT 09-MAR-2023
DEFINITION  muscleblind-like protein 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931180
VERSION     XP_053931180.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075205.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..371
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..371
                     /product="muscleblind-like protein 3 isoform X1"
                     /calculated_mol_wt=40155
     Region          17..39
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     Region          178..202
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     CDS             1..371
                     /gene="MBNL3"
                     /coded_by="XM_054075205.1:944..2059"
                     /db_xref="GeneID:104060666"
ORIGIN      
        1 mavnvslvrd tkwltlevcr efqrgtcsrs daeckfahps rschvengrv iacfdslkgr
       61 ctrenckylh ppphlktqle ingrnnliqq ktaaamfaqq mqfmlpgaql qpittfpvtp
      121 slatsptmaf spylshvspg mglvpaellp ntpvlvsgnp tvtvpggsag qklmrtdkle
      181 vcrefqrgnc trgendcrya hpidiamidt nentvtvcmd yikgrcsrek ckyfhppahl
      241 qakikaaqhq vnqtaaaama lppgalqplp krpaleknng attvfnpsvf hyqqalanmq
      301 lqqptfiptg svlcmtptas vvpmmhgatp ttvsaattpa tsvpfaatat anqisqlsvd
      361 elsssmfvsq m
//
LOCUS       XP_053931181             371 aa            linear   VRT 09-MAR-2023
DEFINITION  muscleblind-like protein 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931181
VERSION     XP_053931181.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075206.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..371
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..371
                     /product="muscleblind-like protein 3 isoform X1"
                     /calculated_mol_wt=40155
     Region          17..39
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     Region          178..202
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     CDS             1..371
                     /gene="MBNL3"
                     /coded_by="XM_054075206.1:946..2061"
                     /db_xref="GeneID:104060666"
ORIGIN      
        1 mavnvslvrd tkwltlevcr efqrgtcsrs daeckfahps rschvengrv iacfdslkgr
       61 ctrenckylh ppphlktqle ingrnnliqq ktaaamfaqq mqfmlpgaql qpittfpvtp
      121 slatsptmaf spylshvspg mglvpaellp ntpvlvsgnp tvtvpggsag qklmrtdkle
      181 vcrefqrgnc trgendcrya hpidiamidt nentvtvcmd yikgrcsrek ckyfhppahl
      241 qakikaaqhq vnqtaaaama lppgalqplp krpaleknng attvfnpsvf hyqqalanmq
      301 lqqptfiptg svlcmtptas vvpmmhgatp ttvsaattpa tsvpfaatat anqisqlsvd
      361 elsssmfvsq m
//
LOCUS       XP_053931183             371 aa            linear   VRT 09-MAR-2023
DEFINITION  muscleblind-like protein 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931183
VERSION     XP_053931183.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075208.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..371
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..371
                     /product="muscleblind-like protein 3 isoform X1"
                     /calculated_mol_wt=40155
     Region          17..39
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     Region          178..202
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     CDS             1..371
                     /gene="MBNL3"
                     /coded_by="XM_054075208.1:922..2037"
                     /db_xref="GeneID:104060666"
ORIGIN      
        1 mavnvslvrd tkwltlevcr efqrgtcsrs daeckfahps rschvengrv iacfdslkgr
       61 ctrenckylh ppphlktqle ingrnnliqq ktaaamfaqq mqfmlpgaql qpittfpvtp
      121 slatsptmaf spylshvspg mglvpaellp ntpvlvsgnp tvtvpggsag qklmrtdkle
      181 vcrefqrgnc trgendcrya hpidiamidt nentvtvcmd yikgrcsrek ckyfhppahl
      241 qakikaaqhq vnqtaaaama lppgalqplp krpaleknng attvfnpsvf hyqqalanmq
      301 lqqptfiptg svlcmtptas vvpmmhgatp ttvsaattpa tsvpfaatat anqisqlsvd
      361 elsssmfvsq m
//
LOCUS       XP_053931184             371 aa            linear   VRT 09-MAR-2023
DEFINITION  muscleblind-like protein 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931184
VERSION     XP_053931184.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075209.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..371
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..371
                     /product="muscleblind-like protein 3 isoform X1"
                     /calculated_mol_wt=40155
     Region          17..39
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     Region          178..202
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     CDS             1..371
                     /gene="MBNL3"
                     /coded_by="XM_054075209.1:963..2078"
                     /db_xref="GeneID:104060666"
ORIGIN      
        1 mavnvslvrd tkwltlevcr efqrgtcsrs daeckfahps rschvengrv iacfdslkgr
       61 ctrenckylh ppphlktqle ingrnnliqq ktaaamfaqq mqfmlpgaql qpittfpvtp
      121 slatsptmaf spylshvspg mglvpaellp ntpvlvsgnp tvtvpggsag qklmrtdkle
      181 vcrefqrgnc trgendcrya hpidiamidt nentvtvcmd yikgrcsrek ckyfhppahl
      241 qakikaaqhq vnqtaaaama lppgalqplp krpaleknng attvfnpsvf hyqqalanmq
      301 lqqptfiptg svlcmtptas vvpmmhgatp ttvsaattpa tsvpfaatat anqisqlsvd
      361 elsssmfvsq m
//
LOCUS       XP_053931185             359 aa            linear   VRT 09-MAR-2023
DEFINITION  muscleblind-like protein 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931185
VERSION     XP_053931185.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075210.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..359
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..359
                     /product="muscleblind-like protein 3 isoform X2"
                     /calculated_mol_wt=39008
     Region          17..39
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     Region          178..202
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     CDS             1..359
                     /gene="MBNL3"
                     /coded_by="XM_054075210.1:960..2039"
                     /db_xref="GeneID:104060666"
ORIGIN      
        1 mavnvslvrd tkwltlevcr efqrgtcsrs daeckfahps rschvengrv iacfdslkgr
       61 ctrenckylh ppphlktqle ingrnnliqq ktaaamfaqq mqfmlpgaql qpittfpvtp
      121 slatsptmaf spylshvspg mglvpaellp ntpvlvsgnp tvtvpggsag qklmrtdkle
      181 vcrefqrgnc trgendcrya hpidiamidt nentvtvcmd yikgrcsrek ckyfhppahl
      241 qakikaaqhq vnqtaaaama lppgalqplp krpaleknng attvfnpsvf hyqqalanmq
      301 lqqptfiptv pmmhgatptt vsaattpats vpfaatatan qisqlsvdel sssmfvsqm
//
LOCUS       XP_053931186             276 aa            linear   VRT 09-MAR-2023
DEFINITION  muscleblind-like protein 3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931186
VERSION     XP_053931186.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075211.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..276
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..276
                     /product="muscleblind-like protein 3 isoform X3"
                     /calculated_mol_wt=29388
     Region          83..107
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     Region          120..142
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     CDS             1..276
                     /gene="MBNL3"
                     /coded_by="XM_054075211.1:131..961"
                     /db_xref="GeneID:104060666"
ORIGIN      
        1 mfaqqmqfml pgaqlqpitt fpvtpslats ptmafspyls hvspgmglvp aellpntpvl
       61 vsgnptvtvp ggsagqklmr tdklevcref qrgnctrgen dcryahpidi amidtnentv
      121 tvcmdyikgr csrekckyfh ppahlqakik aaqhqvnqta aaamalppga lqplpkrpal
      181 eknngattvf npsvfhyqqa lanmqlqqpt fiptgsvlcm tptasvvpmm hgatpttvsa
      241 attpatsvpf aatatanqis qlsvdelsss mfvsqm
//
LOCUS       XP_053931187             276 aa            linear   VRT 09-MAR-2023
DEFINITION  muscleblind-like protein 3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931187
VERSION     XP_053931187.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075212.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..276
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..276
                     /product="muscleblind-like protein 3 isoform X3"
                     /calculated_mol_wt=29388
     Region          83..107
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     Region          120..142
                     /region_name="ZnF_C3H1"
                     /note="zinc finger; smart00356"
                     /db_xref="CDD:214632"
     CDS             1..276
                     /gene="MBNL3"
                     /coded_by="XM_054075212.1:131..961"
                     /db_xref="GeneID:104060666"
ORIGIN      
        1 mfaqqmqfml pgaqlqpitt fpvtpslats ptmafspyls hvspgmglvp aellpntpvl
       61 vsgnptvtvp ggsagqklmr tdklevcref qrgnctrgen dcryahpidi amidtnentv
      121 tvcmdyikgr csrekckyfh ppahlqakik aaqhqvnqta aaamalppga lqplpkrpal
      181 eknngattvf npsvfhyqqa lanmqlqqpt fiptgsvlcm tptasvvpmm hgatpttvsa
      241 attpatsvpf aatatanqis qlsvdelsss mfvsqm
//
LOCUS       XP_053931188             860 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931188
VERSION     XP_053931188.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075213.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..860
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..860
                     /product="MAP7 domain-containing protein 3 isoform X1"
                     /calculated_mol_wt=95369
     Region          <30..161
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          105..>161
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     Region          <269..456
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          508..660
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..860
                     /gene="MAP7D3"
                     /coded_by="XM_054075213.1:58..2640"
                     /db_xref="GeneID:104060689"
ORIGIN      
        1 maeggdappg gcsslkglre qmvaaaqala eerrsqsgis plavqtsinl ktatkpvidg
       61 stlkteerqr larerreere rqhaaretqi lekerkaklq yekqleerqr klkeqkqkee
      121 qrraaveekr kqkieeeker yeavmhrsme rsqrvetrqk rwswggsttp dseskteqqn
      181 tdeggtgask qstptanlkq tdaamnkrls ssaallnasd rsttkrsssl nrlnnkvplh
      241 sqqsalkgsq veqkggtekk rstslnrmss kpqpspelek vkkeektarr sqlspldssv
      301 isrllaptqa slarsksaat lsaggqdpse shlcprsasa ssisspvptp kvpvrsrsid
      361 rlkssvsssd asspdstqkl eaekpspgsg lrrppspsvs aprrspspan lvkhppspsa
      421 vrqktrppsp svskqrppsp tpvskpapiq rppltpgvin itkkkteaes kpkekitegt
      481 gqeqgaslal drdvvaastk tkeesgsktv agtttaeeaa kilaekrrla reqreredqe
      541 riqrqeeeri reeemakrai eekahreeel rkqeeekrla yeeqqrqaee erirreqeeq
      601 eklaelqhqk eeaeakaqee verqrlerer imqqnmqerl erkkrieeim krtrkpdqne
      661 sknegksvse vmegedieee eelglektdq pgklngvdll qevkgeaegc letvhslisa
      721 eseeqdlsel kagevfmngs dlksddgsll vtelkdsshp aeemviddsv klgineadht
      781 igliqnlngk sgswtfeefi dvgvyskstk lssesisasn cnqnlndaat ipsspklafe
      841 edgavnsltk pidassgnss
//
LOCUS       XP_053931189             858 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931189
VERSION     XP_053931189.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075214.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..858
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..858
                     /product="MAP7 domain-containing protein 3 isoform X2"
                     /calculated_mol_wt=95266
     Region          <30..161
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          105..>161
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     Region          <269..456
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          508..660
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..858
                     /gene="MAP7D3"
                     /coded_by="XM_054075214.1:58..2634"
                     /db_xref="GeneID:104060689"
ORIGIN      
        1 maeggdappg gcsslkglre qmvaaaqala eerrsqsgis plavqtsinl ktatkpvidg
       61 stlkteerqr larerreere rqhaaretqi lekerkaklq yekqleerqr klkeqkqkee
      121 qrraaveekr kqkieeeker yeavmhrsme rsqrvetrqk rwswggsttp dseskteqqn
      181 tdeggtgask qstptanlkq tdaamnkrls ssaallnasd rsttkrsssl nrlnnkvplh
      241 sqqsalkgsq veqkggtekk rstslnrmss kpqpspelek vkkeektarr sqlspldssv
      301 isrllaptqa slarsksaat lsaggqdpse shlcprsasa ssisspvptp kvpvrsrsid
      361 rlkssvsssd asspdstqkl eaekpspgsg lrrppspsvs aprrspspan lvkhppspsa
      421 vrqktrppsp svskqrppsp tpvskpapiq rppltpgvin itkkkteaes kpkekitegt
      481 gqeqgaslal drdvvaastk tkeesgsktv agtttaeeaa kilaekrrla reqreredqe
      541 riqrqeeeri reeemakrai eekahreeel rkqeeekrla yeeqqrqaee erirreqeeq
      601 eklaelqhqk eeaeakaqee verqrlerer imqqnmqerl erkkrieeim krtrkpdqne
      661 sknegksvse vmegedieee eelglektdq pgklngvdll qevkgeaegc letvhslisa
      721 eseeqdlsel kagevfmngs dlksddgsll vtelkdsshp aeemviddsv klgineadht
      781 igliqnlngk sgswtfeefi dvgvyskstk lssesisasn cnqnlndaat ipsspklafe
      841 edgavnsltk pidassel
//
LOCUS       XP_053931190             853 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931190
VERSION     XP_053931190.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075215.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..853
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..853
                     /product="MAP7 domain-containing protein 3 isoform X3"
                     /calculated_mol_wt=94612
     Region          <30..161
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          105..>161
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     Region          165..>449
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     Region          501..653
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..853
                     /gene="MAP7D3"
                     /coded_by="XM_054075215.1:58..2619"
                     /db_xref="GeneID:104060689"
ORIGIN      
        1 maeggdappg gcsslkglre qmvaaaqala eerrsqsgis plavqtsinl ktatkpvidg
       61 stlkteerqr larerreere rqhaaretqi lekerkaklq yekqleerqr klkeqkqkee
      121 qrraaveekr kqkieeeker yeavmhrsme rsqrvetrqk rwswggsttp dseskteqqn
      181 tdeggtgask qstptanlkq tdaamnkrls ssaallnasd rsttkrsssl nrlnnkvplh
      241 sqqsalkggt ekkrstslnr msskpqpspe lekvkkeekt arrsqlspld ssvisrllap
      301 tqaslarsks aatlsaggqd pseshlcprs asassisspv ptpkvpvrsr sidrlkssvs
      361 ssdasspdst qkleaekpsp gsglrrppsp svsaprrsps panlvkhpps psavrqktrp
      421 pspsvskqrp psptpvskpa piqrppltpg vinitkkkte aeskpkekit egtgqeqgas
      481 laldrdvvaa stktkeesgs ktvagtttae eaakilaekr rlareqrere dqeriqrqee
      541 erireeemak raieekahre eelrkqeeek rlayeeqqrq aeeerirreq eeqeklaelq
      601 hqkeeaeaka qeeverqrle rerimqqnmq erlerkkrie eimkrtrkpd qnesknegks
      661 vsevmegedi eeeeelglek tdqpgklngv dllqevkgea egcletvhsl isaeseeqdl
      721 selkagevfm ngsdlksddg sllvtelkds shpaeemvid dsvklginea dhtigliqnl
      781 ngksgswtfe efidvgvysk stklssesis asncnqnlnd aatipsspkl afeedgavns
      841 ltkpidassg nss
//
LOCUS       XP_053931191             852 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 3 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931191
VERSION     XP_053931191.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075216.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..852
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..852
                     /product="MAP7 domain-containing protein 3 isoform X4"
                     /calculated_mol_wt=94459
     Region          <30..161
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          105..>161
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     Region          <269..448
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          500..652
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..852
                     /gene="MAP7D3"
                     /coded_by="XM_054075216.1:58..2616"
                     /db_xref="GeneID:104060689"
ORIGIN      
        1 maeggdappg gcsslkglre qmvaaaqala eerrsqsgis plavqtsinl ktatkpvidg
       61 stlkteerqr larerreere rqhaaretqi lekerkaklq yekqleerqr klkeqkqkee
      121 qrraaveekr kqkieeeker yeavmhrsme rsqrvetrqk rwswggsttp dseskteqqn
      181 tdeggtgask qstptanlkq tdaamnkrls ssaallnasd rsttkrsssl nrlnnkvplh
      241 sqqsalkgsq veqkggtekk rstslnrmss kpqpspelek vkkeektarr sqlspldssv
      301 isrllaptqa slarsksaat lsaggqdpsa sassisspvp tpkvpvrsrs idrlkssvss
      361 sdasspdstq kleaekpspg sglrrppsps vsaprrspsp anlvkhppsp savrqktrpp
      421 spsvskqrpp sptpvskpap iqrppltpgv initkkktea eskpkekite gtgqeqgasl
      481 aldrdvvaas tktkeesgsk tvagtttaee aakilaekrr lareqrered qeriqrqeee
      541 rireeemakr aieekahree elrkqeeekr layeeqqrqa eeerirreqe eqeklaelqh
      601 qkeeaeakaq eeverqrler erimqqnmqe rlerkkriee imkrtrkpdq nesknegksv
      661 sevmegedie eeeelglekt dqpgklngvd llqevkgeae gcletvhsli saeseeqdls
      721 elkagevfmn gsdlksddgs llvtelkdss hpaeemvidd svklginead htigliqnln
      781 gksgswtfee fidvgvysks tklssesisa sncnqnlnda atipsspkla feedgavnsl
      841 tkpidassgn ss
//
LOCUS       XP_053931192             849 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 3 isoform X5 [Cuculus canorus].
ACCESSION   XP_053931192
VERSION     XP_053931192.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075217.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..849
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..849
                     /product="MAP7 domain-containing protein 3 isoform X5"
                     /calculated_mol_wt=94252
     Region          <30..161
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          105..>161
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     Region          <258..445
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          497..649
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..849
                     /gene="MAP7D3"
                     /coded_by="XM_054075217.1:58..2607"
                     /db_xref="GeneID:104060689"
ORIGIN      
        1 maeggdappg gcsslkglre qmvaaaqala eerrsqsgis plavqtsinl ktatkpvidg
       61 stlkteerqr larerreere rqhaaretqi lekerkaklq yekqleerqr klkeqkqkee
      121 qrraaveekr kqkieeeker yeavmhrsme rsqrvetrqk rwswggsttp dsesktaskq
      181 stptanlkqt daamnkrlss saallnasdr sttkrsssln rlnnkvplhs qqsalkgsqv
      241 eqkggtekkr stslnrmssk pqpspelekv kkeektarrs qlspldssvi srllaptqas
      301 larsksaatl saggqdpses hlcprsasas sisspvptpk vpvrsrsidr lkssvsssda
      361 sspdstqkle aekpspgsgl rrppspsvsa prrspspanl vkhppspsav rqktrppsps
      421 vskqrppspt pvskpapiqr ppltpgvini tkkkteaesk pkekitegtg qeqgaslald
      481 rdvvaastkt keesgsktva gtttaeeaak ilaekrrlar eqreredqer iqrqeeerir
      541 eeemakraie ekahreeelr kqeeekrlay eeqqrqaeee rirreqeeqe klaelqhqke
      601 eaeakaqeev erqrlereri mqqnmqerle rkkrieeimk rtrkpdqnes knegksvsev
      661 megedieeee elglektdqp gklngvdllq evkgeaegcl etvhslisae seeqdlselk
      721 agevfmngsd lksddgsllv telkdsshpa eemviddsvk lgineadhti gliqnlngks
      781 gswtfeefid vgvyskstkl ssesisasnc nqnlndaati psspklafee dgavnsltkp
      841 idassgnss
//
LOCUS       XP_053931193             827 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 3 isoform X6 [Cuculus canorus].
ACCESSION   XP_053931193
VERSION     XP_053931193.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075218.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..827
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..827
                     /product="MAP7 domain-containing protein 3 isoform X6"
                     /calculated_mol_wt=91671
     Region          <30..161
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          105..>161
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     Region          <270..423
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          475..627
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..827
                     /gene="MAP7D3"
                     /coded_by="XM_054075218.1:58..2541"
                     /db_xref="GeneID:104060689"
ORIGIN      
        1 maeggdappg gcsslkglre qmvaaaqala eerrsqsgis plavqtsinl ktatkpvidg
       61 stlkteerqr larerreere rqhaaretqi lekerkaklq yekqleerqr klkeqkqkee
      121 qrraaveekr kqkieeeker yeavmhrsme rsqrvetrqk rwswggsttp dseskteqqn
      181 tdeggtgask qstptanlkq tdaamnkrls ssaallnasd rsttkrsssl nrlnnkvplh
      241 sqqsalkgsq veqkarrsql spldssvisr llaptqasla rsksaatlsa ggqdpseshl
      301 cprsasassi sspvptpkvp vrsrsidrlk ssvsssdass pdstqkleae kpspgsglrr
      361 ppspsvsapr rspspanlvk hppspsavrq ktrppspsvs kqrppsptpv skpapiqrpp
      421 ltpgvinitk kkteaeskpk ekitegtgqe qgaslaldrd vvaastktke esgsktvagt
      481 ttaeeaakil aekrrlareq reredqeriq rqeeeriree emakraieek ahreeelrkq
      541 eeekrlayee qqrqaeeeri rreqeeqekl aelqhqkeea eakaqeever qrlererimq
      601 qnmqerlerk krieeimkrt rkpdqneskn egksvsevme gedieeeeel glektdqpgk
      661 lngvdllqev kgeaegclet vhslisaese eqdlselkag evfmngsdlk sddgsllvte
      721 lkdsshpaee mviddsvklg ineadhtigl iqnlngksgs wtfeefidvg vyskstklss
      781 esisasncnq nlndaatips spklafeedg avnsltkpid assgnss
//
LOCUS       XP_053931194             819 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 3 isoform X7 [Cuculus canorus].
ACCESSION   XP_053931194
VERSION     XP_053931194.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075219.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..819
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..819
                     /product="MAP7 domain-containing protein 3 isoform X7"
                     /calculated_mol_wt=90761
     Region          <30..161
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          105..>161
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     Region          <270..415
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          467..619
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..819
                     /gene="MAP7D3"
                     /coded_by="XM_054075219.1:58..2517"
                     /db_xref="GeneID:104060689"
ORIGIN      
        1 maeggdappg gcsslkglre qmvaaaqala eerrsqsgis plavqtsinl ktatkpvidg
       61 stlkteerqr larerreere rqhaaretqi lekerkaklq yekqleerqr klkeqkqkee
      121 qrraaveekr kqkieeeker yeavmhrsme rsqrvetrqk rwswggsttp dseskteqqn
      181 tdeggtgask qstptanlkq tdaamnkrls ssaallnasd rsttkrsssl nrlnnkvplh
      241 sqqsalkgsq veqkarrsql spldssvisr llaptqasla rsksaatlsa ggqdpsasas
      301 sisspvptpk vpvrsrsidr lkssvsssda sspdstqkle aekpspgsgl rrppspsvsa
      361 prrspspanl vkhppspsav rqktrppsps vskqrppspt pvskpapiqr ppltpgvini
      421 tkkkteaesk pkekitegtg qeqgaslald rdvvaastkt keesgsktva gtttaeeaak
      481 ilaekrrlar eqreredqer iqrqeeerir eeemakraie ekahreeelr kqeeekrlay
      541 eeqqrqaeee rirreqeeqe klaelqhqke eaeakaqeev erqrlereri mqqnmqerle
      601 rkkrieeimk rtrkpdqnes knegksvsev megedieeee elglektdqp gklngvdllq
      661 evkgeaegcl etvhslisae seeqdlselk agevfmngsd lksddgsllv telkdsshpa
      721 eemviddsvk lgineadhti gliqnlngks gswtfeefid vgvyskstkl ssesisasnc
      781 nqnlndaati psspklafee dgavnsltkp idassgnss
//
LOCUS       XP_053931195             810 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 3 isoform X8 [Cuculus canorus].
ACCESSION   XP_053931195
VERSION     XP_053931195.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075220.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..810
                     /product="MAP7 domain-containing protein 3 isoform X8"
                     /calculated_mol_wt=90224
     Region          <30..161
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          105..>161
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     Region          165..>442
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     Region          458..610
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..810
                     /gene="MAP7D3"
                     /coded_by="XM_054075220.1:58..2490"
                     /db_xref="GeneID:104060689"
ORIGIN      
        1 maeggdappg gcsslkglre qmvaaaqala eerrsqsgis plavqtsinl ktatkpvidg
       61 stlkteerqr larerreere rqhaaretqi lekerkaklq yekqleerqr klkeqkqkee
      121 qrraaveekr kqkieeeker yeavmhrsme rsqrvetrqk rwswggsttp dseskteqqn
      181 tdeggtgask qstptanlkq tdaamnkrls ssaallnasd rsttkrsssl nrlnnkvplh
      241 sqqsalkgsq veqkggtekk rstslnrmss kpqpspelek vkkeektasa ssisspvptp
      301 kvpvrsrsid rlkssvsssd asspdstqkl eaekpspgsg lrrppspsvs aprrspspan
      361 lvkhppspsa vrqktrppsp svskqrppsp tpvskpapiq rppltpgvin itkkkteaes
      421 kpkekitegt gqeqgaslal drdvvaastk tkeesgsktv agtttaeeaa kilaekrrla
      481 reqreredqe riqrqeeeri reeemakrai eekahreeel rkqeeekrla yeeqqrqaee
      541 erirreqeeq eklaelqhqk eeaeakaqee verqrlerer imqqnmqerl erkkrieeim
      601 krtrkpdqne sknegksvse vmegedieee eelglektdq pgklngvdll qevkgeaegc
      661 letvhslisa eseeqdlsel kagevfmngs dlksddgsll vtelkdsshp aeemviddsv
      721 klgineadht igliqnlngk sgswtfeefi dvgvyskstk lssesisasn cnqnlndaat
      781 ipsspklafe edgavnsltk pidassgnss
//
LOCUS       XP_053931196             803 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 3 isoform X9 [Cuculus canorus].
ACCESSION   XP_053931196
VERSION     XP_053931196.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075221.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..803
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..803
                     /product="MAP7 domain-containing protein 3 isoform X9"
                     /calculated_mol_wt=89468
     Region          <30..161
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          105..>161
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     Region          165..>435
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     Region          451..603
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..803
                     /gene="MAP7D3"
                     /coded_by="XM_054075221.1:58..2469"
                     /db_xref="GeneID:104060689"
ORIGIN      
        1 maeggdappg gcsslkglre qmvaaaqala eerrsqsgis plavqtsinl ktatkpvidg
       61 stlkteerqr larerreere rqhaaretqi lekerkaklq yekqleerqr klkeqkqkee
      121 qrraaveekr kqkieeeker yeavmhrsme rsqrvetrqk rwswggsttp dseskteqqn
      181 tdeggtgask qstptanlkq tdaamnkrls ssaallnasd rsttkrsssl nrlnnkvplh
      241 sqqsalkggt ekkrstslnr msskpqpspe lekvkkeekt asassisspv ptpkvpvrsr
      301 sidrlkssvs ssdasspdst qkleaekpsp gsglrrppsp svsaprrsps panlvkhpps
      361 psavrqktrp pspsvskqrp psptpvskpa piqrppltpg vinitkkkte aeskpkekit
      421 egtgqeqgas laldrdvvaa stktkeesgs ktvagtttae eaakilaekr rlareqrere
      481 dqeriqrqee erireeemak raieekahre eelrkqeeek rlayeeqqrq aeeerirreq
      541 eeqeklaelq hqkeeaeaka qeeverqrle rerimqqnmq erlerkkrie eimkrtrkpd
      601 qnesknegks vsevmegedi eeeeelglek tdqpgklngv dllqevkgea egcletvhsl
      661 isaeseeqdl selkagevfm ngsdlksddg sllvtelkds shpaeemvid dsvklginea
      721 dhtigliqnl ngksgswtfe efidvgvysk stklssesis asncnqnlnd aatipsspkl
      781 afeedgavns ltkpidassg nss
//
LOCUS       XP_053931197             794 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 3 isoform X10 [Cuculus canorus].
ACCESSION   XP_053931197
VERSION     XP_053931197.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075222.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..794
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..794
                     /product="MAP7 domain-containing protein 3 isoform X10"
                     /calculated_mol_wt=88067
     Region          <30..161
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          105..>161
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     Region          <237..390
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          442..594
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..794
                     /gene="MAP7D3"
                     /coded_by="XM_054075222.1:58..2442"
                     /db_xref="GeneID:104060689"
ORIGIN      
        1 maeggdappg gcsslkglre qmvaaaqala eerrsqsgis plavqtsinl ktatkpvidg
       61 stlkteerqr larerreere rqhaaretqi lekerkaklq yekqleerqr klkeqkqkee
      121 qrraaveekr kqkieeeker yeavmhrsme rsqrvetrqk rwswggsttp dseskteqqn
      181 tdeggtgask qstptanlkq tdaamnkrls ssaallnasd rtrrsqlspl dssvisrlla
      241 ptqaslarsk saatlsaggq dpseshlcpr sasassissp vptpkvpvrs rsidrlkssv
      301 sssdasspds tqkleaekps pgsglrrpps psvsaprrsp spanlvkhpp spsavrqktr
      361 ppspsvskqr ppsptpvskp apiqrppltp gvinitkkkt eaeskpkeki tegtgqeqga
      421 slaldrdvva astktkeesg sktvagttta eeaakilaek rrlareqrer edqeriqrqe
      481 eerireeema kraieekahr eeelrkqeee krlayeeqqr qaeeerirre qeeqeklael
      541 qhqkeeaeak aqeeverqrl ererimqqnm qerlerkkri eeimkrtrkp dqnesknegk
      601 svsevmeged ieeeeelgle ktdqpgklng vdllqevkge aegcletvhs lisaeseeqd
      661 lselkagevf mngsdlksdd gsllvtelkd sshpaeemvi ddsvklgine adhtigliqn
      721 lngksgswtf eefidvgvys kstklssesi sasncnqnln daatipsspk lafeedgavn
      781 sltkpidass gnss
//
LOCUS       XP_053931198             786 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 3 isoform X11 [Cuculus canorus].
ACCESSION   XP_053931198
VERSION     XP_053931198.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075223.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..786
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..786
                     /product="MAP7 domain-containing protein 3 isoform X11"
                     /calculated_mol_wt=87157
     Region          <30..161
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          105..>161
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     Region          165..>379
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     Region          434..586
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..786
                     /gene="MAP7D3"
                     /coded_by="XM_054075223.1:58..2418"
                     /db_xref="GeneID:104060689"
ORIGIN      
        1 maeggdappg gcsslkglre qmvaaaqala eerrsqsgis plavqtsinl ktatkpvidg
       61 stlkteerqr larerreere rqhaaretqi lekerkaklq yekqleerqr klkeqkqkee
      121 qrraaveekr kqkieeeker yeavmhrsme rsqrvetrqk rwswggsttp dseskteqqn
      181 tdeggtgask qstptanlkq tdaamnkrls ssaallnasd rtrrsqlspl dssvisrlla
      241 ptqaslarsk saatlsaggq dpsasassis spvptpkvpv rsrsidrlks svsssdassp
      301 dstqkleaek pspgsglrrp pspsvsaprr spspanlvkh ppspsavrqk trppspsvsk
      361 qrppsptpvs kpapiqrppl tpgvinitkk kteaeskpke kitegtgqeq gaslaldrdv
      421 vaastktkee sgsktvagtt taeeaakila ekrrlareqr eredqeriqr qeeerireee
      481 makraieeka hreeelrkqe eekrlayeeq qrqaeeerir reqeeqekla elqhqkeeae
      541 akaqeeverq rlererimqq nmqerlerkk rieeimkrtr kpdqneskne gksvsevmeg
      601 edieeeeelg lektdqpgkl ngvdllqevk geaegcletv hslisaesee qdlselkage
      661 vfmngsdlks ddgsllvtel kdsshpaeem viddsvklgi neadhtigli qnlngksgsw
      721 tfeefidvgv yskstklsse sisasncnqn lndaatipss pklafeedga vnsltkpida
      781 ssgnss
//
LOCUS       XP_053931199             783 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 3 isoform X12 [Cuculus canorus].
ACCESSION   XP_053931199
VERSION     XP_053931199.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075224.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..783
                     /product="MAP7 domain-containing protein 3 isoform X12"
                     /calculated_mol_wt=86950
     Region          <30..161
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          105..>161
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     Region          <166..379
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          431..583
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..783
                     /gene="MAP7D3"
                     /coded_by="XM_054075224.1:58..2409"
                     /db_xref="GeneID:104060689"
ORIGIN      
        1 maeggdappg gcsslkglre qmvaaaqala eerrsqsgis plavqtsinl ktatkpvidg
       61 stlkteerqr larerreere rqhaaretqi lekerkaklq yekqleerqr klkeqkqkee
      121 qrraaveekr kqkieeeker yeavmhrsme rsqrvetrqk rwswggsttp dsesktaskq
      181 stptanlkqt daamnkrlss saallnasdr trrsqlspld ssvisrllap tqaslarsks
      241 aatlsaggqd pseshlcprs asassisspv ptpkvpvrsr sidrlkssvs ssdasspdst
      301 qkleaekpsp gsglrrppsp svsaprrsps panlvkhpps psavrqktrp pspsvskqrp
      361 psptpvskpa piqrppltpg vinitkkkte aeskpkekit egtgqeqgas laldrdvvaa
      421 stktkeesgs ktvagtttae eaakilaekr rlareqrere dqeriqrqee erireeemak
      481 raieekahre eelrkqeeek rlayeeqqrq aeeerirreq eeqeklaelq hqkeeaeaka
      541 qeeverqrle rerimqqnmq erlerkkrie eimkrtrkpd qnesknegks vsevmegedi
      601 eeeeelglek tdqpgklngv dllqevkgea egcletvhsl isaeseeqdl selkagevfm
      661 ngsdlksddg sllvtelkds shpaeemvid dsvklginea dhtigliqnl ngksgswtfe
      721 efidvgvysk stklssesis asncnqnlnd aatipsspkl afeedgavns ltkpidassg
      781 nss
//
LOCUS       XP_053931200             752 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 3 isoform X13 [Cuculus canorus].
ACCESSION   XP_053931200
VERSION     XP_053931200.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075225.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..752
                     /product="MAP7 domain-containing protein 3 isoform X13"
                     /calculated_mol_wt=83801
     Region          <30..161
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          105..>161
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     Region          169..>348
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     Region          <284..348
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          400..552
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..752
                     /gene="MAP7D3"
                     /coded_by="XM_054075225.1:58..2316"
                     /db_xref="GeneID:104060689"
ORIGIN      
        1 maeggdappg gcsslkglre qmvaaaqala eerrsqsgis plavqtsinl ktatkpvidg
       61 stlkteerqr larerreere rqhaaretqi lekerkaklq yekqleerqr klkeqkqkee
      121 qrraaveekr kqkieeeker yeavmhrsme rsqrvetrqk rwswggsttp dseskteqqn
      181 tdeggtgask qstptanlkq tdaamnkrls ssaallnasd rkshlcprsa sassisspvp
      241 tpkvpvrsrs idrlkssvss sdasspdstq kleaekpspg sglrrppsps vsaprrspsp
      301 anlvkhppsp savrqktrpp spsvskqrpp sptpvskpap iqrppltpgv initkkktea
      361 eskpkekite gtgqeqgasl aldrdvvaas tktkeesgsk tvagtttaee aakilaekrr
      421 lareqrered qeriqrqeee rireeemakr aieekahree elrkqeeekr layeeqqrqa
      481 eeerirreqe eqeklaelqh qkeeaeakaq eeverqrler erimqqnmqe rlerkkriee
      541 imkrtrkpdq nesknegksv sevmegedie eeeelglekt dqpgklngvd llqevkgeae
      601 gcletvhsli saeseeqdls elkagevfmn gsdlksddgs llvtelkdss hpaeemvidd
      661 svklginead htigliqnln gksgswtfee fidvgvysks tklssesisa sncnqnlnda
      721 atipsspkla feedgavnsl tkpidassgn ss
//
LOCUS       XP_053931201             744 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 3 isoform X14 [Cuculus canorus].
ACCESSION   XP_053931201
VERSION     XP_053931201.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075226.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..744
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..744
                     /product="MAP7 domain-containing protein 3 isoform X14"
                     /calculated_mol_wt=82922
     Region          <30..161
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          105..>161
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     Region          169..>340
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     Region          392..544
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..744
                     /gene="MAP7D3"
                     /coded_by="XM_054075226.1:58..2292"
                     /db_xref="GeneID:104060689"
ORIGIN      
        1 maeggdappg gcsslkglre qmvaaaqala eerrsqsgis plavqtsinl ktatkpvidg
       61 stlkteerqr larerreere rqhaaretqi lekerkaklq yekqleerqr klkeqkqkee
      121 qrraaveekr kqkieeeker yeavmhrsme rsqrvetrqk rwswggsttp dseskteqqn
      181 tdeggtgask qstptanlkq tdaamnkrls ssaallnasd rtsassissp vptpkvpvrs
      241 rsidrlkssv sssdasspds tqkleaekps pgsglrrpps psvsaprrsp spanlvkhpp
      301 spsavrqktr ppspsvskqr ppsptpvskp apiqrppltp gvinitkkkt eaeskpkeki
      361 tegtgqeqga slaldrdvva astktkeesg sktvagttta eeaakilaek rrlareqrer
      421 edqeriqrqe eerireeema kraieekahr eeelrkqeee krlayeeqqr qaeeerirre
      481 qeeqeklael qhqkeeaeak aqeeverqrl ererimqqnm qerlerkkri eeimkrtrkp
      541 dqnesknegk svsevmeged ieeeeelgle ktdqpgklng vdllqevkge aegcletvhs
      601 lisaeseeqd lselkagevf mngsdlksdd gsllvtelkd sshpaeemvi ddsvklgine
      661 adhtigliqn lngksgswtf eefidvgvys kstklssesi sasncnqnln daatipsspk
      721 lafeedgavn sltkpidass gnss
//
LOCUS       XP_053931202             741 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 3 isoform X15 [Cuculus canorus].
ACCESSION   XP_053931202
VERSION     XP_053931202.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075227.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..741
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..741
                     /product="MAP7 domain-containing protein 3 isoform X15"
                     /calculated_mol_wt=82684
     Region          <30..161
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          105..>161
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     Region          <166..337
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          389..541
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..741
                     /gene="MAP7D3"
                     /coded_by="XM_054075227.1:58..2283"
                     /db_xref="GeneID:104060689"
ORIGIN      
        1 maeggdappg gcsslkglre qmvaaaqala eerrsqsgis plavqtsinl ktatkpvidg
       61 stlkteerqr larerreere rqhaaretqi lekerkaklq yekqleerqr klkeqkqkee
      121 qrraaveekr kqkieeeker yeavmhrsme rsqrvetrqk rwswggsttp dsesktaskq
      181 stptanlkqt daamnkrlss saallnasdr kshlcprsas assisspvpt pkvpvrsrsi
      241 drlkssvsss dasspdstqk leaekpspgs glrrppspsv saprrspspa nlvkhppsps
      301 avrqktrpps psvskqrpps ptpvskpapi qrppltpgvi nitkkkteae skpkekiteg
      361 tgqeqgasla ldrdvvaast ktkeesgskt vagtttaeea akilaekrrl areqreredq
      421 eriqrqeeer ireeemakra ieekahreee lrkqeeekrl ayeeqqrqae eerirreqee
      481 qeklaelqhq keeaeakaqe everqrlere rimqqnmqer lerkkrieei mkrtrkpdqn
      541 esknegksvs evmegediee eeelglektd qpgklngvdl lqevkgeaeg cletvhslis
      601 aeseeqdlse lkagevfmng sdlksddgsl lvtelkdssh paeemvidds vklgineadh
      661 tigliqnlng ksgswtfeef idvgvyskst klssesisas ncnqnlndaa tipsspklaf
      721 eedgavnslt kpidassgns s
//
LOCUS       XP_053931203             733 aa            linear   VRT 09-MAR-2023
DEFINITION  MAP7 domain-containing protein 3 isoform X16 [Cuculus canorus].
ACCESSION   XP_053931203
VERSION     XP_053931203.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075228.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..733
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..733
                     /product="MAP7 domain-containing protein 3 isoform X16"
                     /calculated_mol_wt=81805
     Region          <30..161
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          105..>161
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     Region          210..>341
                     /region_name="PHA03269"
                     /note="envelope glycoprotein C; Provisional"
                     /db_xref="CDD:165527"
     Region          381..533
                     /region_name="MAP7"
                     /note="MAP7 (E-MAP-115) family; pfam05672"
                     /db_xref="CDD:461709"
     CDS             1..733
                     /gene="MAP7D3"
                     /coded_by="XM_054075228.1:58..2259"
                     /db_xref="GeneID:104060689"
ORIGIN      
        1 maeggdappg gcsslkglre qmvaaaqala eerrsqsgis plavqtsinl ktatkpvidg
       61 stlkteerqr larerreere rqhaaretqi lekerkaklq yekqleerqr klkeqkqkee
      121 qrraaveekr kqkieeeker yeavmhrsme rsqrvetrqk rwswggsttp dsesktaskq
      181 stptanlkqt daamnkrlss saallnasdr tsassisspv ptpkvpvrsr sidrlkssvs
      241 ssdasspdst qkleaekpsp gsglrrppsp svsaprrsps panlvkhpps psavrqktrp
      301 pspsvskqrp psptpvskpa piqrppltpg vinitkkkte aeskpkekit egtgqeqgas
      361 laldrdvvaa stktkeesgs ktvagtttae eaakilaekr rlareqrere dqeriqrqee
      421 erireeemak raieekahre eelrkqeeek rlayeeqqrq aeeerirreq eeqeklaelq
      481 hqkeeaeaka qeeverqrle rerimqqnmq erlerkkrie eimkrtrkpd qnesknegks
      541 vsevmegedi eeeeelglek tdqpgklngv dllqevkgea egcletvhsl isaeseeqdl
      601 selkagevfm ngsdlksddg sllvtelkds shpaeemvid dsvklginea dhtigliqnl
      661 ngksgswtfe efidvgvysk stklssesis asncnqnlnd aatipsspkl afeedgavns
      721 ltkpidassg nss
//
LOCUS       XP_053931204             282 aa            linear   VRT 09-MAR-2023
DEFINITION  four and a half LIM domains protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931204
VERSION     XP_053931204.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075229.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..282
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..282
                     /product="four and a half LIM domains protein 1 isoform
                     X1"
                     /calculated_mol_wt=32323
     Region          <5..33
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cl02475"
                     /db_xref="CDD:413332"
     Region          40..94
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cl02475"
                     /db_xref="CDD:413332"
     Site            order(40,43,62,65,68,71,90,93)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     Region          102..159
                     /region_name="LIM2_FHL1"
                     /note="The second LIM domain of Four and a half LIM
                     domains protein 1 (FHL1); cd09424"
                     /db_xref="CDD:188808"
     Site            order(102,105,124,127,130,133,151,154)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188808"
     Region          163..215
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cl02475"
                     /db_xref="CDD:413332"
     Site            order(163,166,183,186,189,192,210,213)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     Region          218..282
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cl02475"
                     /db_xref="CDD:413332"
     Site            order(222,225,248,251,254,257,275,278)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     CDS             1..282
                     /gene="FHL1"
                     /coded_by="XM_054075229.1:177..1025"
                     /db_xref="GeneID:104060674"
ORIGIN      
        1 mserfdchyc rdplqgkkyv qkegrhccvk cfekicantc ieckkpigad skelhfknry
       61 whdtcfrcfk cyaslvnepf mlrennkvwc snctakedap rckgcfkpii agdqnveykk
      121 mvwhkdcftc sqckqvigsg sffpkgddfy cvschehkfa ktcakcknpi tsggltyqeq
      181 pwhsecfics nckkplggkr ftaveeefyc vecykecvak kcagcknpit agfgrgtsvv
      241 nyedeswhdy cfkctkcarg lankrfvchn gkiycaecpk rl
//
LOCUS       XP_053931205             281 aa            linear   VRT 09-MAR-2023
DEFINITION  four and a half LIM domains protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931205
VERSION     XP_053931205.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075230.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..281
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..281
                     /product="four and a half LIM domains protein 1 isoform
                     X2"
                     /calculated_mol_wt=32252
     Region          <5..33
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cl02475"
                     /db_xref="CDD:413332"
     Region          40..94
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cl02475"
                     /db_xref="CDD:413332"
     Site            order(40,43,62,65,68,71,90,93)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     Region          102..159
                     /region_name="LIM2_FHL1"
                     /note="The second LIM domain of Four and a half LIM
                     domains protein 1 (FHL1); cd09424"
                     /db_xref="CDD:188808"
     Site            order(102,105,124,127,130,133,151,154)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188808"
     Region          163..215
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cl02475"
                     /db_xref="CDD:413332"
     Site            order(163,166,183,186,189,192,210,213)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     Region          218..281
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cl02475"
                     /db_xref="CDD:413332"
     Site            order(222,225,247,250,253,256,274,277)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     CDS             1..281
                     /gene="FHL1"
                     /coded_by="XM_054075230.1:177..1022"
                     /db_xref="GeneID:104060674"
ORIGIN      
        1 mserfdchyc rdplqgkkyv qkegrhccvk cfekicantc ieckkpigad skelhfknry
       61 whdtcfrcfk cyaslvnepf mlrennkvwc snctakedap rckgcfkpii agdqnveykk
      121 mvwhkdcftc sqckqvigsg sffpkgddfy cvschehkfa ktcakcknpi tsggltyqeq
      181 pwhsecfics nckkplggkr ftaveeefyc vecykecvak kcagcknpit gfgrgtsvvn
      241 yedeswhdyc fkctkcargl ankrfvchng kiycaecpkr l
//
LOCUS       XP_009560790             298 aa            linear   VRT 09-MAR-2023
DEFINITION  four and a half LIM domains protein 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_009560790
VERSION     XP_009560790.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009562495.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..298
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..298
                     /product="four and a half LIM domains protein 1 isoform
                     X3"
                     /calculated_mol_wt=34024
     Region          <21..49
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cl02475"
                     /db_xref="CDD:413332"
     Region          56..110
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cl02475"
                     /db_xref="CDD:413332"
     Site            order(56,59,78,81,84,87,106,109)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     Region          118..175
                     /region_name="LIM2_FHL1"
                     /note="The second LIM domain of Four and a half LIM
                     domains protein 1 (FHL1); cd09424"
                     /db_xref="CDD:188808"
     Site            order(118,121,140,143,146,149,167,170)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188808"
     Region          179..231
                     /region_name="LIM3_FHL1"
                     /note="The third LIM domain of Four and a half LIM domains
                     protein 1 (FHL1); cd09429"
                     /db_xref="CDD:188813"
     Site            order(179,182,199,202,205,208,226,229)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188813"
     Region          234..298
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cl02475"
                     /db_xref="CDD:413332"
     Site            order(238,241,264,267,270,273,291,294)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     CDS             1..298
                     /gene="FHL1"
                     /coded_by="XM_009562495.2:133..1029"
                     /db_xref="GeneID:104060674"
ORIGIN      
        1 mafhrhtgpg sytvgtmser fdchycrdpl qgkkyvqkeg rhccvkcfek icantcieck
       61 kpigadskel hfknrywhdt cfrcfkcyas lvnepfmlre nnkvwcsnct akedaprckg
      121 cfkpiiagdq nveykkmvwh kdcftcsqck qvigsgsffp kgddfycvsc hehkfaktca
      181 kcknpitsgg ltyqeqpwhs ecficsnckk plggkrftav eeefycvecy kecvakkcag
      241 cknpitagfg rgtsvvnyed eswhdycfkc tkcarglank rfvchngkiy caecpkrl
//
LOCUS       XP_009560791             297 aa            linear   VRT 09-MAR-2023
DEFINITION  four and a half LIM domains protein 1 isoform X4 [Cuculus canorus].
ACCESSION   XP_009560791
VERSION     XP_009560791.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009562496.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..297
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..297
                     /product="four and a half LIM domains protein 1 isoform
                     X4"
                     /calculated_mol_wt=33952
     Region          <21..49
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cl02475"
                     /db_xref="CDD:413332"
     Region          56..110
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cl02475"
                     /db_xref="CDD:413332"
     Site            order(56,59,78,81,84,87,106,109)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     Region          118..175
                     /region_name="LIM2_FHL1"
                     /note="The second LIM domain of Four and a half LIM
                     domains protein 1 (FHL1); cd09424"
                     /db_xref="CDD:188808"
     Site            order(118,121,140,143,146,149,167,170)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188808"
     Region          179..231
                     /region_name="LIM3_FHL1"
                     /note="The third LIM domain of Four and a half LIM domains
                     protein 1 (FHL1); cd09429"
                     /db_xref="CDD:188813"
     Site            order(179,182,199,202,205,208,226,229)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188813"
     Region          234..297
                     /region_name="LIM4_FHL1"
                     /note="The fourth LIM domain of Four and a half LIM
                     domains protein 1 (FHL1); cd09348"
                     /db_xref="CDD:188734"
     Site            order(238,241,263,266,269,272,290,293)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188734"
     CDS             1..297
                     /gene="FHL1"
                     /coded_by="XM_009562496.2:133..1026"
                     /db_xref="GeneID:104060674"
ORIGIN      
        1 mafhrhtgpg sytvgtmser fdchycrdpl qgkkyvqkeg rhccvkcfek icantcieck
       61 kpigadskel hfknrywhdt cfrcfkcyas lvnepfmlre nnkvwcsnct akedaprckg
      121 cfkpiiagdq nveykkmvwh kdcftcsqck qvigsgsffp kgddfycvsc hehkfaktca
      181 kcknpitsgg ltyqeqpwhs ecficsnckk plggkrftav eeefycvecy kecvakkcag
      241 cknpitgfgr gtsvvnyede swhdycfkct kcarglankr fvchngkiyc aecpkrl
//
LOCUS       XP_053931206             282 aa            linear   VRT 09-MAR-2023
DEFINITION  four and a half LIM domains protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931206
VERSION     XP_053931206.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075231.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..282
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..282
                     /product="four and a half LIM domains protein 1 isoform
                     X1"
                     /calculated_mol_wt=32323
     Region          <5..33
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cl02475"
                     /db_xref="CDD:413332"
     Region          40..94
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cl02475"
                     /db_xref="CDD:413332"
     Site            order(40,43,62,65,68,71,90,93)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     Region          102..159
                     /region_name="LIM2_FHL1"
                     /note="The second LIM domain of Four and a half LIM
                     domains protein 1 (FHL1); cd09424"
                     /db_xref="CDD:188808"
     Site            order(102,105,124,127,130,133,151,154)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188808"
     Region          163..215
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cl02475"
                     /db_xref="CDD:413332"
     Site            order(163,166,183,186,189,192,210,213)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     Region          218..282
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cl02475"
                     /db_xref="CDD:413332"
     Site            order(222,225,248,251,254,257,275,278)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     CDS             1..282
                     /gene="FHL1"
                     /coded_by="XM_054075231.1:46..894"
                     /db_xref="GeneID:104060674"
ORIGIN      
        1 mserfdchyc rdplqgkkyv qkegrhccvk cfekicantc ieckkpigad skelhfknry
       61 whdtcfrcfk cyaslvnepf mlrennkvwc snctakedap rckgcfkpii agdqnveykk
      121 mvwhkdcftc sqckqvigsg sffpkgddfy cvschehkfa ktcakcknpi tsggltyqeq
      181 pwhsecfics nckkplggkr ftaveeefyc vecykecvak kcagcknpit agfgrgtsvv
      241 nyedeswhdy cfkctkcarg lankrfvchn gkiycaecpk rl
//
LOCUS       XP_053931207             282 aa            linear   VRT 09-MAR-2023
DEFINITION  four and a half LIM domains protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931207
VERSION     XP_053931207.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075232.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..282
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..282
                     /product="four and a half LIM domains protein 1 isoform
                     X1"
                     /calculated_mol_wt=32323
     Region          <5..33
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cl02475"
                     /db_xref="CDD:413332"
     Region          40..94
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cl02475"
                     /db_xref="CDD:413332"
     Site            order(40,43,62,65,68,71,90,93)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     Region          102..159
                     /region_name="LIM2_FHL1"
                     /note="The second LIM domain of Four and a half LIM
                     domains protein 1 (FHL1); cd09424"
                     /db_xref="CDD:188808"
     Site            order(102,105,124,127,130,133,151,154)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:188808"
     Region          163..215
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cl02475"
                     /db_xref="CDD:413332"
     Site            order(163,166,183,186,189,192,210,213)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     Region          218..282
                     /region_name="LIM"
                     /note="LIM is a small protein-protein interaction domain,
                     containing two zinc fingers; cl02475"
                     /db_xref="CDD:413332"
     Site            order(222,225,248,251,254,257,275,278)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     CDS             1..282
                     /gene="FHL1"
                     /coded_by="XM_054075232.1:130..978"
                     /db_xref="GeneID:104060674"
ORIGIN      
        1 mserfdchyc rdplqgkkyv qkegrhccvk cfekicantc ieckkpigad skelhfknry
       61 whdtcfrcfk cyaslvnepf mlrennkvwc snctakedap rckgcfkpii agdqnveykk
      121 mvwhkdcftc sqckqvigsg sffpkgddfy cvschehkfa ktcakcknpi tsggltyqeq
      181 pwhsecfics nckkplggkr ftaveeefyc vecykecvak kcagcknpit agfgrgtsvv
      241 nyedeswhdy cfkctkcarg lankrfvchn gkiycaecpk rl
//
LOCUS       XP_053931208             765 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich repeat and calponin homology domain-containing protein
            2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931208
VERSION     XP_053931208.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075233.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..765
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..765
                     /product="leucine-rich repeat and calponin homology
                     domain-containing protein 2 isoform X1"
                     /calculated_mol_wt=86090
     Region          63..83
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <79..>252
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          84..106
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          107..129
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          130..145
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          152..174
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          175..197
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          198..218
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          220..242
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          643..753
                     /region_name="CH_LRCH2"
                     /note="calponin homology (CH) domain found in leucine-rich
                     repeat and calponin homology domain-containing protein 2;
                     cd21271"
                     /db_xref="CDD:409120"
     Site            order(648,652,707,709..710,713..714,716,726..734,740,
                     742..743,745..746,749..750,753)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409120"
     CDS             1..765
                     /gene="LRCH2"
                     /coded_by="XM_054075233.1:68..2365"
                     /db_xref="GeneID:104063745"
ORIGIN      
        1 maagqgggng ngngngaggl gipghltlsf sagphwgaaa tlsqphtvrs ldraleeags
       61 sgilclsgrk lrdfpgsgyd lsdttqadls knrfteippd vwlfapletl nlyhnciksi
      121 pesiknlqml tylnisrnll stlpkylfdl plkvlvvsnn klvsipeeig klrdlmeldi
      181 scnelqvlpq qigklqslre lnirrnnlhm lpdelgdlpl vkldfscnki teipicyrkl
      241 rhlqvivldn npmqippaqi clkgkvhifk flsiqaclri dkkpdsldlp slgkripsqp
      301 ltdsmedfyp nknhgpdsgi gsdngdkrls ttepsdddti slhsqvsest reqtlrndnh
      361 vmgskldpqk dqevydyidp nteegavpeq gdvqigplls yikergkhpe ksqkieqned
      421 wrdekrlqke qllaedddel kevtdlrkia aqllqqeqkh rrrplsyrts fseklfqrtr
      481 aagrasrlln hsvsigtrnr pkqpvesekc vssdevnspv spyswqplen qkesldeqhw
      541 petqpviwqn eerrrskqir keyfkykssr ksssgnende qdsdntnvsp qspvssedye
      601 rtdsnthgpf glkprsafsr asrqdygtad pgftmrrkme hlreereqir qlrnnlesrl
      661 kvilpddiga almdgvvlch lanhirprsv asihvpspav pklsmakcrr nvenfldack
      721 klgvpqerlc lphhileerg lvkvgltvqa llelptlkvs qlssm
//
LOCUS       XP_053931209             748 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich repeat and calponin homology domain-containing protein
            2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931209
VERSION     XP_053931209.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075234.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..748
                     /product="leucine-rich repeat and calponin homology
                     domain-containing protein 2 isoform X2"
                     /calculated_mol_wt=84317
     Region          63..83
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <79..>252
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          84..106
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          107..129
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          130..145
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          152..174
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          175..197
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          198..218
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          220..242
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          626..736
                     /region_name="CH_LRCH2"
                     /note="calponin homology (CH) domain found in leucine-rich
                     repeat and calponin homology domain-containing protein 2;
                     cd21271"
                     /db_xref="CDD:409120"
     Site            order(631,635,690,692..693,696..697,699,709..717,723,
                     725..726,728..729,732..733,736)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409120"
     CDS             1..748
                     /gene="LRCH2"
                     /coded_by="XM_054075234.1:68..2314"
                     /db_xref="GeneID:104063745"
ORIGIN      
        1 maagqgggng ngngngaggl gipghltlsf sagphwgaaa tlsqphtvrs ldraleeags
       61 sgilclsgrk lrdfpgsgyd lsdttqadls knrfteippd vwlfapletl nlyhnciksi
      121 pesiknlqml tylnisrnll stlpkylfdl plkvlvvsnn klvsipeeig klrdlmeldi
      181 scnelqvlpq qigklqslre lnirrnnlhm lpdelgdlpl vkldfscnki teipicyrkl
      241 rhlqvivldn npmqippaqi clkgkvhifk flsiqaclri dkkpdsldlp slgkripsqp
      301 ltdsmedfyp nknhgpdsgi gsdngdkrls ttepsdddti slhsqvsest reqtlrndnh
      361 vmgskldpqk dqevydyidp nteegavpeq gdvqigplls yikergkhpe ksqkieqned
      421 wrdekrlqke qllaedddel kevtdlrkia aqllqqeqkh rrrplsyrts fseklfqrtr
      481 aagrasrlln hsvsigtrnr pkqpvesekc vssdevnspv spyswqplen qkesldeqhw
      541 petqpviwqn eerrrskqir keyfkykssr ksssgnende dyertdsnth gpfglkprsa
      601 fsrasrqdyg tadpgftmrr kmehlreere qirqlrnnle srlkvilpdd igaalmdgvv
      661 lchlanhirp rsvasihvps pavpklsmak crrnvenfld ackklgvpqe rlclphhile
      721 erglvkvglt vqallelptl kvsqlssm
//
LOCUS       XP_053931210             739 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich repeat and calponin homology domain-containing protein
            2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931210
VERSION     XP_053931210.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075235.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..739
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..739
                     /product="leucine-rich repeat and calponin homology
                     domain-containing protein 2 isoform X3"
                     /calculated_mol_wt=83009
     Region          63..83
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <79..>252
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          84..106
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          107..129
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          130..145
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          152..174
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          175..197
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          198..218
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          220..242
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          617..727
                     /region_name="CH_LRCH2"
                     /note="calponin homology (CH) domain found in leucine-rich
                     repeat and calponin homology domain-containing protein 2;
                     cd21271"
                     /db_xref="CDD:409120"
     Site            order(622,626,681,683..684,687..688,690,700..708,714,
                     716..717,719..720,723..724,727)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409120"
     CDS             1..739
                     /gene="LRCH2"
                     /coded_by="XM_054075235.1:67..2286"
                     /db_xref="GeneID:104063745"
ORIGIN      
        1 maagqgggng ngngngaggl gipghltlsf sagphwgaaa tlsqphtvrs ldraleeags
       61 sgilclsgrk lrdfpgsgyd lsdttqadls knrfteippd vwlfapletl nlyhnciksi
      121 pesiknlqml tylnisrnll stlpkylfdl plkvlvvsnn klvsipeeig klrdlmeldi
      181 scnelqvlpq qigklqslre lnirrnnlhm lpdelgdlpl vkldfscnki teipicyrkl
      241 rhlqvivldn npmqippaqi clkgkvhifk flsiqaclri dkkpdsldlp slgkripsqp
      301 ltdsmedfyp nknhgpdsgi gsdngdkrls ttepsdddti slhsqvsest reqtlrndnh
      361 vmgskldpqk dqevydyidp nteegavpeq gdvqigplls yikergkhpe ksqkieqned
      421 wrdekrlqke qllaedddel kevtdlrkia aqllqqeqkh rllnhsvsig trnrpkqpve
      481 sekcvssdev nspvspyswq plenqkesld eqhwpetqpv iwqneerrrs kqirkeyfky
      541 kssrksssgn endeqdsdnt nvspqspvss edyertdsnt hgpfglkprs afsrasrqdy
      601 gtadpgftmr rkmehlreer eqirqlrnnl esrlkvilpd digaalmdgv vlchlanhir
      661 prsvasihvp spavpklsma kcrrnvenfl dackklgvpq erlclphhil eerglvkvgl
      721 tvqallelpt lkvsqlssm
//
LOCUS       XP_053931211             722 aa            linear   VRT 09-MAR-2023
DEFINITION  leucine-rich repeat and calponin homology domain-containing protein
            2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931211
VERSION     XP_053931211.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075236.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..722
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..722
                     /product="leucine-rich repeat and calponin homology
                     domain-containing protein 2 isoform X4"
                     /calculated_mol_wt=81236
     Region          63..83
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <79..>252
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          84..106
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          107..129
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          130..145
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          152..174
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          175..197
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          198..218
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          220..242
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          600..710
                     /region_name="CH_LRCH2"
                     /note="calponin homology (CH) domain found in leucine-rich
                     repeat and calponin homology domain-containing protein 2;
                     cd21271"
                     /db_xref="CDD:409120"
     Site            order(605,609,664,666..667,670..671,673,683..691,697,
                     699..700,702..703,706..707,710)
                     /site_type="other"
                     /note="putative actin binding site [polypeptide binding]"
                     /db_xref="CDD:409120"
     CDS             1..722
                     /gene="LRCH2"
                     /coded_by="XM_054075236.1:67..2235"
                     /db_xref="GeneID:104063745"
ORIGIN      
        1 maagqgggng ngngngaggl gipghltlsf sagphwgaaa tlsqphtvrs ldraleeags
       61 sgilclsgrk lrdfpgsgyd lsdttqadls knrfteippd vwlfapletl nlyhnciksi
      121 pesiknlqml tylnisrnll stlpkylfdl plkvlvvsnn klvsipeeig klrdlmeldi
      181 scnelqvlpq qigklqslre lnirrnnlhm lpdelgdlpl vkldfscnki teipicyrkl
      241 rhlqvivldn npmqippaqi clkgkvhifk flsiqaclri dkkpdsldlp slgkripsqp
      301 ltdsmedfyp nknhgpdsgi gsdngdkrls ttepsdddti slhsqvsest reqtlrndnh
      361 vmgskldpqk dqevydyidp nteegavpeq gdvqigplls yikergkhpe ksqkieqned
      421 wrdekrlqke qllaedddel kevtdlrkia aqllqqeqkh rllnhsvsig trnrpkqpve
      481 sekcvssdev nspvspyswq plenqkesld eqhwpetqpv iwqneerrrs kqirkeyfky
      541 kssrksssgn endedyertd snthgpfglk prsafsrasr qdygtadpgf tmrrkmehlr
      601 eereqirqlr nnlesrlkvi lpddigaalm dgvvlchlan hirprsvasi hvpspavpkl
      661 smakcrrnve nfldackklg vpqerlclph hileerglvk vgltvqalle lptlkvsqls
      721 sm
//
LOCUS       XP_053931212             489 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-13 receptor subunit alpha-2 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053931212
VERSION     XP_053931212.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075237.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..489
                     /product="interleukin-13 receptor subunit alpha-2 isoform
                     X1"
                     /calculated_mol_wt=56021
     Region          247..340
                     /region_name="IL6Ra-bind"
                     /note="Interleukin-6 receptor alpha chain, binding;
                     pfam09240"
                     /db_xref="CDD:401252"
     Region          343..438
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(343,408,431)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(432..433,435..436)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..489
                     /gene="IL13RA2"
                     /coded_by="XM_054075237.1:768..2237"
                     /db_xref="GeneID:104063756"
ORIGIN      
        1 misshasyil sgwlfrcscl kltlwkqeyt qnfssillfq fsfcrgskyf hlarylaqrk
       61 iltrsasshl chrtafltlh tlqwepltfc lqmtlrwlsa lslalvwgyv vssssyyttv
      121 appqdlhiad pgllgsldie wkpppnvqtf nectvkykfe yrnagdrewm rwlsltqlcd
      181 kiisllsvif trklklrvgf dfsrtaevkv qtllegrctd dvevqsdwiy aafhvplqgd
      241 lesevqnfhc iyhdweylkc twqpgllapr gvyyglyywy egldharqcd dyiqdhgini
      301 gctlqnlsqa eykdlsicvn gsaattqlrp lyvtlrlhnl akplppeqlv vsmsaseelh
      361 vnwsppggkt ppqcleyevq laedqgqtkd awesvstqme taltisranq shiscvrvrg
      421 rtnilcadqg fwsewtqecf svfrnedkql filipvilsl sssliifmli gqckkrssag
      481 kpwhssmgc
//
LOCUS       XP_053931213             472 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-13 receptor subunit alpha-2 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053931213
VERSION     XP_053931213.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075238.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..472
                     /product="interleukin-13 receptor subunit alpha-2 isoform
                     X2"
                     /calculated_mol_wt=54049
     Region          230..323
                     /region_name="IL6Ra-bind"
                     /note="Interleukin-6 receptor alpha chain, binding;
                     pfam09240"
                     /db_xref="CDD:401252"
     Region          326..421
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(326,391,414)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(415..416,418..419)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..472
                     /gene="IL13RA2"
                     /coded_by="XM_054075238.1:764..2182"
                     /db_xref="GeneID:104063756"
ORIGIN      
        1 misshasyil sgwlfrcscl kltlwkqeyt qnfssillfq fsfcrgskyf hlarylaqrk
       61 iltrsasshl chrtafltlh tlqwepltfc lqmtlrwlsa lslalvwgyv vssssyyttv
      121 appqdlhiad pgllgsldie wkpppnvqtf nectvkykfe yrnagdrewm viftrklklr
      181 vgfdfsrtae vkvqtllegr ctddvevqsd wiyaafhvpl qgdlesevqn fhciyhdwey
      241 lkctwqpgll aprgvyygly ywyegldhar qcddyiqdhg inigctlqnl sqaeykdlsi
      301 cvngsaattq lrplyvtlrl hnlakplppe qlvvsmsase elhvnwsppg gktppqcley
      361 evqlaedqgq tkdawesvst qmetaltisr anqshiscvr vrgrtnilca dqgfwsewtq
      421 ecfsvfrned kqlfilipvi lslsssliif mligqckkrs sagkpwhssm gc
//
LOCUS       XP_053931214             433 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-13 receptor subunit alpha-2 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053931214
VERSION     XP_053931214.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075239.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..433
                     /product="interleukin-13 receptor subunit alpha-2 isoform
                     X3"
                     /calculated_mol_wt=49227
     Region          191..284
                     /region_name="IL6Ra-bind"
                     /note="Interleukin-6 receptor alpha chain, binding;
                     pfam09240"
                     /db_xref="CDD:401252"
     Region          287..382
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(287,352,375)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(376..377,379..380)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..433
                     /gene="IL13RA2"
                     /coded_by="XM_054075239.1:1903..3204"
                     /db_xref="GeneID:104063756"
ORIGIN      
        1 mgshalrdpa sshlchrtaf ltlhtlqwep ltfclqmtlr wlsalslalv wgyvvssssy
       61 yttvappqdl hiadpgllgs ldiewkpppn vqtfnectvk ykfeyrnagd rewmrwlslt
      121 qlcdkiisll sviftrklkl rvgfdfsrta evkvqtlleg rctddvevqs dwiyaafhvp
      181 lqgdlesevq nfhciyhdwe ylkctwqpgl laprgvyygl yywyegldha rqcddyiqdh
      241 ginigctlqn lsqaeykdls icvngsaatt qlrplyvtlr lhnlakplpp eqlvvsmsas
      301 eelhvnwspp ggktppqcle yevqlaedqg qtkdawesvs tqmetaltis ranqshiscv
      361 rvrgrtnilc adqgfwsewt qecfsvfrne dkqlfilipv ilslssslii fmligqckkr
      421 ssagkpwhss mgc
//
LOCUS       XP_053931215             397 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-13 receptor subunit alpha-2 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053931215
VERSION     XP_053931215.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075240.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..397
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..397
                     /product="interleukin-13 receptor subunit alpha-2 isoform
                     X4"
                     /calculated_mol_wt=45126
     Region          155..248
                     /region_name="IL6Ra-bind"
                     /note="Interleukin-6 receptor alpha chain, binding;
                     pfam09240"
                     /db_xref="CDD:401252"
     Region          251..346
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(251,316,339)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(340..341,343..344)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..397
                     /gene="IL13RA2"
                     /coded_by="XM_054075240.1:732..1925"
                     /db_xref="GeneID:104063756"
ORIGIN      
        1 mtlrwlsals lalvwgyvvs sssyyttvap pqdlhiadpg llgsldiewk pppnvqtfne
       61 ctvkykfeyr nagdrewmrw lsltqlcdki isllsviftr klklrvgfdf srtaevkvqt
      121 llegrctddv evqsdwiyaa fhvplqgdle sevqnfhciy hdweylkctw qpgllaprgv
      181 yyglyywyeg ldharqcddy iqdhginigc tlqnlsqaey kdlsicvngs aattqlrply
      241 vtlrlhnlak plppeqlvvs msaseelhvn wsppggktpp qcleyevqla edqgqtkdaw
      301 esvstqmeta ltisranqsh iscvrvrgrt nilcadqgfw sewtqecfsv frnedkqlfi
      361 lipvilslss sliifmligq ckkrssagkp whssmgc
//
LOCUS       XP_053931217             397 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-13 receptor subunit alpha-2 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053931217
VERSION     XP_053931217.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075242.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..397
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..397
                     /product="interleukin-13 receptor subunit alpha-2 isoform
                     X4"
                     /calculated_mol_wt=45126
     Region          155..248
                     /region_name="IL6Ra-bind"
                     /note="Interleukin-6 receptor alpha chain, binding;
                     pfam09240"
                     /db_xref="CDD:401252"
     Region          251..346
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(251,316,339)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(340..341,343..344)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..397
                     /gene="IL13RA2"
                     /coded_by="XM_054075242.1:628..1821"
                     /db_xref="GeneID:104063756"
ORIGIN      
        1 mtlrwlsals lalvwgyvvs sssyyttvap pqdlhiadpg llgsldiewk pppnvqtfne
       61 ctvkykfeyr nagdrewmrw lsltqlcdki isllsviftr klklrvgfdf srtaevkvqt
      121 llegrctddv evqsdwiyaa fhvplqgdle sevqnfhciy hdweylkctw qpgllaprgv
      181 yyglyywyeg ldharqcddy iqdhginigc tlqnlsqaey kdlsicvngs aattqlrply
      241 vtlrlhnlak plppeqlvvs msaseelhvn wsppggktpp qcleyevqla edqgqtkdaw
      301 esvstqmeta ltisranqsh iscvrvrgrt nilcadqgfw sewtqecfsv frnedkqlfi
      361 lipvilslss sliifmligq ckkrssagkp whssmgc
//
LOCUS       XP_053931218             397 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-13 receptor subunit alpha-2 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053931218
VERSION     XP_053931218.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075243.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..397
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..397
                     /product="interleukin-13 receptor subunit alpha-2 isoform
                     X4"
                     /calculated_mol_wt=45126
     Region          155..248
                     /region_name="IL6Ra-bind"
                     /note="Interleukin-6 receptor alpha chain, binding;
                     pfam09240"
                     /db_xref="CDD:401252"
     Region          251..346
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(251,316,339)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(340..341,343..344)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..397
                     /gene="IL13RA2"
                     /coded_by="XM_054075243.1:204..1397"
                     /db_xref="GeneID:104063756"
ORIGIN      
        1 mtlrwlsals lalvwgyvvs sssyyttvap pqdlhiadpg llgsldiewk pppnvqtfne
       61 ctvkykfeyr nagdrewmrw lsltqlcdki isllsviftr klklrvgfdf srtaevkvqt
      121 llegrctddv evqsdwiyaa fhvplqgdle sevqnfhciy hdweylkctw qpgllaprgv
      181 yyglyywyeg ldharqcddy iqdhginigc tlqnlsqaey kdlsicvngs aattqlrply
      241 vtlrlhnlak plppeqlvvs msaseelhvn wsppggktpp qcleyevqla edqgqtkdaw
      301 esvstqmeta ltisranqsh iscvrvrgrt nilcadqgfw sewtqecfsv frnedkqlfi
      361 lipvilslss sliifmligq ckkrssagkp whssmgc
//
LOCUS       XP_053931219             397 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-13 receptor subunit alpha-2 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053931219
VERSION     XP_053931219.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075244.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..397
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..397
                     /product="interleukin-13 receptor subunit alpha-2 isoform
                     X4"
                     /calculated_mol_wt=45126
     Region          155..248
                     /region_name="IL6Ra-bind"
                     /note="Interleukin-6 receptor alpha chain, binding;
                     pfam09240"
                     /db_xref="CDD:401252"
     Region          251..346
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(251,316,339)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(340..341,343..344)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..397
                     /gene="IL13RA2"
                     /coded_by="XM_054075244.1:1562..2755"
                     /db_xref="GeneID:104063756"
ORIGIN      
        1 mtlrwlsals lalvwgyvvs sssyyttvap pqdlhiadpg llgsldiewk pppnvqtfne
       61 ctvkykfeyr nagdrewmrw lsltqlcdki isllsviftr klklrvgfdf srtaevkvqt
      121 llegrctddv evqsdwiyaa fhvplqgdle sevqnfhciy hdweylkctw qpgllaprgv
      181 yyglyywyeg ldharqcddy iqdhginigc tlqnlsqaey kdlsicvngs aattqlrply
      241 vtlrlhnlak plppeqlvvs msaseelhvn wsppggktpp qcleyevqla edqgqtkdaw
      301 esvstqmeta ltisranqsh iscvrvrgrt nilcadqgfw sewtqecfsv frnedkqlfi
      361 lipvilslss sliifmligq ckkrssagkp whssmgc
//
LOCUS       XP_053931220             416 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-13 receptor subunit alpha-2 isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053931220
VERSION     XP_053931220.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075245.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..416
                     /product="interleukin-13 receptor subunit alpha-2 isoform
                     X5"
                     /calculated_mol_wt=47256
     Region          174..267
                     /region_name="IL6Ra-bind"
                     /note="Interleukin-6 receptor alpha chain, binding;
                     pfam09240"
                     /db_xref="CDD:401252"
     Region          270..365
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(270,335,358)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(359..360,362..363)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..416
                     /gene="IL13RA2"
                     /coded_by="XM_054075245.1:16..1266"
                     /db_xref="GeneID:104063756"
ORIGIN      
        1 mgshalrdpa sshlchrtaf ltlhtlqwep ltfclqmtlr wlsalslalv wgyvvssssy
       61 yttvappqdl hiadpgllgs ldiewkpppn vqtfnectvk ykfeyrnagd rewmviftrk
      121 lklrvgfdfs rtaevkvqtl legrctddve vqsdwiyaaf hvplqgdles evqnfhciyh
      181 dweylkctwq pgllaprgvy yglyywyegl dharqcddyi qdhginigct lqnlsqaeyk
      241 dlsicvngsa attqlrplyv tlrlhnlakp lppeqlvvsm saseelhvnw sppggktppq
      301 cleyevqlae dqgqtkdawe svstqmetal tisranqshi scvrvrgrtn ilcadqgfws
      361 ewtqecfsvf rnedkqlfil ipvilslsss liifmligqc kkrssagkpw hssmgc
//
LOCUS       XP_053931221            1155 aa            linear   VRT 09-MAR-2023
DEFINITION  hephaestin isoform X1 [Cuculus canorus].
ACCESSION   XP_053931221
VERSION     XP_053931221.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075246.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1155
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1155
                     /product="hephaestin isoform X1"
                     /calculated_mol_wt=130133
     Region          24..206
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          220..360
                     /region_name="CuRO_2_ceruloplasmin"
                     /note="The second cupredoxin domain of Ceruloplasmin;
                     cd11021"
                     /db_xref="CDD:259907"
     Site            order(222..224,226,230..232,234..237,240..242,245..248,
                     251..252,261..263,265..266,269..279,290..292,294,314,
                     327..329,341,350..352,355)
                     /site_type="other"
                     /note="Domain 1 interface [polypeptide binding]"
                     /db_xref="CDD:259907"
     Site            order(295..297,315,323..327)
                     /site_type="other"
                     /note="Domain 6 interface [polypeptide binding]"
                     /db_xref="CDD:259907"
     Site            order(300,302,304,315,319,321,323,345..349,351)
                     /site_type="other"
                     /note="Domain 4 interface [polypeptide binding]"
                     /db_xref="CDD:259907"
     Site            order(304,309,315..316,318,335..336,339..341,345,347,
                     350..351,357)
                     /site_type="other"
                     /note="Domain 3 interface [polypeptide binding]"
                     /db_xref="CDD:259907"
     Region          374..570
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          573..716
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          731..902
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          915..1060
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     CDS             1..1155
                     /gene="HEPH"
                     /coded_by="XM_054075246.1:191..3658"
                     /db_xref="GeneID:104054303"
ORIGIN      
        1 mgsfgwlllc ihtlsptlag gayrvyylgi cevdwdyapm gknvltnesi tqnlkastfl
       61 qpgkdrvgst ykksiykqyt dstytteipk pgwlgflgpl iraevgdtik vhlknfasrp
      121 ytihphgvfy ekdsegslyp dmspqdqkkd davfpggnyt ytwtvpedhs ptaddpnclt
      181 wiyhshidap kdiasgligp lltckkgilt gssqrrqdvd idfflmfsvv denlswylde
      241 niasfctdps svdkedeefq esnkmhaing yvfgnlpevt mcagdyvswh lfgmgnevdv
      301 htayfhgeml svrghrtdva slfpatfvta dmiphnpgrw llscqindhi qagmgalyev
      361 rpcsrqapps tlegrvrkyy iaakevqwdy gpsgldqrtg kqlseagspa eqffkrgpyq
      421 iggvywkaky veytdesfre ekqrseeeeh lgilgpvika evgdtilvtf vnkaswpfsi
      481 qphgvsyeka wegmryhdgq sqngvsvapl hnytyrwtvp qhvgptssdp pcltwmyssa
      541 vnpvkdassg lvgplvickp gtlddnnkqk gidkefyllf svfdenlswy lnanikyylr
      601 meesavkkdd gfeesnrmha inglmfgnll glnvcegdnv swhllglgse advhgavfqg
      661 ntlqmngmrr dsaslfahtf atafmqpdnk gtfeiycqta nhyqagmrer ysvskcgerd
      721 papalqykgv rtyyivaeev vwdyapdrnw ererhnhsae syadvflsne ngllgsrykk
      781 avyreytdgt fqtpktrgng dehlgilgpf lwaevgdiln ivfknnatrp ysihahgvle
      841 retgqpqvan pgdivtyqwe vperagpgpn dsacvpwiyy savdpvkdmy sgligplkic
      901 rrgalqadgi rkdmkrefal lflvfdenrs wyleenvehy skgnhgeisl lddrfvesnk
      961 mhaingrlya tlpgltmfqg ewvnwyllgm gqeidihtvh fhaetfiyrn gksyradvvd
     1021 lfpgtfetve mlvgnpgtwl lhchvsdhih agmeivftvl prpepvlevv nysaelpsed
     1081 ndesekimlf gaklpqgqie atvialsvvg ivlflvacfl lgmviylerq krlrrnrrsi
     1141 lddgfklmsk knsgl
//
LOCUS       XP_053931222            1155 aa            linear   VRT 09-MAR-2023
DEFINITION  hephaestin isoform X1 [Cuculus canorus].
ACCESSION   XP_053931222
VERSION     XP_053931222.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075247.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1155
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1155
                     /product="hephaestin isoform X1"
                     /calculated_mol_wt=130133
     Region          24..206
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          220..360
                     /region_name="CuRO_2_ceruloplasmin"
                     /note="The second cupredoxin domain of Ceruloplasmin;
                     cd11021"
                     /db_xref="CDD:259907"
     Site            order(222..224,226,230..232,234..237,240..242,245..248,
                     251..252,261..263,265..266,269..279,290..292,294,314,
                     327..329,341,350..352,355)
                     /site_type="other"
                     /note="Domain 1 interface [polypeptide binding]"
                     /db_xref="CDD:259907"
     Site            order(295..297,315,323..327)
                     /site_type="other"
                     /note="Domain 6 interface [polypeptide binding]"
                     /db_xref="CDD:259907"
     Site            order(300,302,304,315,319,321,323,345..349,351)
                     /site_type="other"
                     /note="Domain 4 interface [polypeptide binding]"
                     /db_xref="CDD:259907"
     Site            order(304,309,315..316,318,335..336,339..341,345,347,
                     350..351,357)
                     /site_type="other"
                     /note="Domain 3 interface [polypeptide binding]"
                     /db_xref="CDD:259907"
     Region          374..570
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          573..716
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          731..902
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          915..1060
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     CDS             1..1155
                     /gene="HEPH"
                     /coded_by="XM_054075247.1:176..3643"
                     /db_xref="GeneID:104054303"
ORIGIN      
        1 mgsfgwlllc ihtlsptlag gayrvyylgi cevdwdyapm gknvltnesi tqnlkastfl
       61 qpgkdrvgst ykksiykqyt dstytteipk pgwlgflgpl iraevgdtik vhlknfasrp
      121 ytihphgvfy ekdsegslyp dmspqdqkkd davfpggnyt ytwtvpedhs ptaddpnclt
      181 wiyhshidap kdiasgligp lltckkgilt gssqrrqdvd idfflmfsvv denlswylde
      241 niasfctdps svdkedeefq esnkmhaing yvfgnlpevt mcagdyvswh lfgmgnevdv
      301 htayfhgeml svrghrtdva slfpatfvta dmiphnpgrw llscqindhi qagmgalyev
      361 rpcsrqapps tlegrvrkyy iaakevqwdy gpsgldqrtg kqlseagspa eqffkrgpyq
      421 iggvywkaky veytdesfre ekqrseeeeh lgilgpvika evgdtilvtf vnkaswpfsi
      481 qphgvsyeka wegmryhdgq sqngvsvapl hnytyrwtvp qhvgptssdp pcltwmyssa
      541 vnpvkdassg lvgplvickp gtlddnnkqk gidkefyllf svfdenlswy lnanikyylr
      601 meesavkkdd gfeesnrmha inglmfgnll glnvcegdnv swhllglgse advhgavfqg
      661 ntlqmngmrr dsaslfahtf atafmqpdnk gtfeiycqta nhyqagmrer ysvskcgerd
      721 papalqykgv rtyyivaeev vwdyapdrnw ererhnhsae syadvflsne ngllgsrykk
      781 avyreytdgt fqtpktrgng dehlgilgpf lwaevgdiln ivfknnatrp ysihahgvle
      841 retgqpqvan pgdivtyqwe vperagpgpn dsacvpwiyy savdpvkdmy sgligplkic
      901 rrgalqadgi rkdmkrefal lflvfdenrs wyleenvehy skgnhgeisl lddrfvesnk
      961 mhaingrlya tlpgltmfqg ewvnwyllgm gqeidihtvh fhaetfiyrn gksyradvvd
     1021 lfpgtfetve mlvgnpgtwl lhchvsdhih agmeivftvl prpepvlevv nysaelpsed
     1081 ndesekimlf gaklpqgqie atvialsvvg ivlflvacfl lgmviylerq krlrrnrrsi
     1141 lddgfklmsk knsgl
//
LOCUS       XP_053931223            1155 aa            linear   VRT 09-MAR-2023
DEFINITION  hephaestin isoform X1 [Cuculus canorus].
ACCESSION   XP_053931223
VERSION     XP_053931223.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075248.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1155
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1155
                     /product="hephaestin isoform X1"
                     /calculated_mol_wt=130133
     Region          24..206
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          220..360
                     /region_name="CuRO_2_ceruloplasmin"
                     /note="The second cupredoxin domain of Ceruloplasmin;
                     cd11021"
                     /db_xref="CDD:259907"
     Site            order(222..224,226,230..232,234..237,240..242,245..248,
                     251..252,261..263,265..266,269..279,290..292,294,314,
                     327..329,341,350..352,355)
                     /site_type="other"
                     /note="Domain 1 interface [polypeptide binding]"
                     /db_xref="CDD:259907"
     Site            order(295..297,315,323..327)
                     /site_type="other"
                     /note="Domain 6 interface [polypeptide binding]"
                     /db_xref="CDD:259907"
     Site            order(300,302,304,315,319,321,323,345..349,351)
                     /site_type="other"
                     /note="Domain 4 interface [polypeptide binding]"
                     /db_xref="CDD:259907"
     Site            order(304,309,315..316,318,335..336,339..341,345,347,
                     350..351,357)
                     /site_type="other"
                     /note="Domain 3 interface [polypeptide binding]"
                     /db_xref="CDD:259907"
     Region          374..570
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          573..716
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          731..902
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          915..1060
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     CDS             1..1155
                     /gene="HEPH"
                     /coded_by="XM_054075248.1:167..3634"
                     /db_xref="GeneID:104054303"
ORIGIN      
        1 mgsfgwlllc ihtlsptlag gayrvyylgi cevdwdyapm gknvltnesi tqnlkastfl
       61 qpgkdrvgst ykksiykqyt dstytteipk pgwlgflgpl iraevgdtik vhlknfasrp
      121 ytihphgvfy ekdsegslyp dmspqdqkkd davfpggnyt ytwtvpedhs ptaddpnclt
      181 wiyhshidap kdiasgligp lltckkgilt gssqrrqdvd idfflmfsvv denlswylde
      241 niasfctdps svdkedeefq esnkmhaing yvfgnlpevt mcagdyvswh lfgmgnevdv
      301 htayfhgeml svrghrtdva slfpatfvta dmiphnpgrw llscqindhi qagmgalyev
      361 rpcsrqapps tlegrvrkyy iaakevqwdy gpsgldqrtg kqlseagspa eqffkrgpyq
      421 iggvywkaky veytdesfre ekqrseeeeh lgilgpvika evgdtilvtf vnkaswpfsi
      481 qphgvsyeka wegmryhdgq sqngvsvapl hnytyrwtvp qhvgptssdp pcltwmyssa
      541 vnpvkdassg lvgplvickp gtlddnnkqk gidkefyllf svfdenlswy lnanikyylr
      601 meesavkkdd gfeesnrmha inglmfgnll glnvcegdnv swhllglgse advhgavfqg
      661 ntlqmngmrr dsaslfahtf atafmqpdnk gtfeiycqta nhyqagmrer ysvskcgerd
      721 papalqykgv rtyyivaeev vwdyapdrnw ererhnhsae syadvflsne ngllgsrykk
      781 avyreytdgt fqtpktrgng dehlgilgpf lwaevgdiln ivfknnatrp ysihahgvle
      841 retgqpqvan pgdivtyqwe vperagpgpn dsacvpwiyy savdpvkdmy sgligplkic
      901 rrgalqadgi rkdmkrefal lflvfdenrs wyleenvehy skgnhgeisl lddrfvesnk
      961 mhaingrlya tlpgltmfqg ewvnwyllgm gqeidihtvh fhaetfiyrn gksyradvvd
     1021 lfpgtfetve mlvgnpgtwl lhchvsdhih agmeivftvl prpepvlevv nysaelpsed
     1081 ndesekimlf gaklpqgqie atvialsvvg ivlflvacfl lgmviylerq krlrrnrrsi
     1141 lddgfklmsk knsgl
//
LOCUS       XP_053931224            1155 aa            linear   VRT 09-MAR-2023
DEFINITION  hephaestin isoform X1 [Cuculus canorus].
ACCESSION   XP_053931224
VERSION     XP_053931224.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075249.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1155
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1155
                     /product="hephaestin isoform X1"
                     /calculated_mol_wt=130133
     Region          24..206
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          220..360
                     /region_name="CuRO_2_ceruloplasmin"
                     /note="The second cupredoxin domain of Ceruloplasmin;
                     cd11021"
                     /db_xref="CDD:259907"
     Site            order(222..224,226,230..232,234..237,240..242,245..248,
                     251..252,261..263,265..266,269..279,290..292,294,314,
                     327..329,341,350..352,355)
                     /site_type="other"
                     /note="Domain 1 interface [polypeptide binding]"
                     /db_xref="CDD:259907"
     Site            order(295..297,315,323..327)
                     /site_type="other"
                     /note="Domain 6 interface [polypeptide binding]"
                     /db_xref="CDD:259907"
     Site            order(300,302,304,315,319,321,323,345..349,351)
                     /site_type="other"
                     /note="Domain 4 interface [polypeptide binding]"
                     /db_xref="CDD:259907"
     Site            order(304,309,315..316,318,335..336,339..341,345,347,
                     350..351,357)
                     /site_type="other"
                     /note="Domain 3 interface [polypeptide binding]"
                     /db_xref="CDD:259907"
     Region          374..570
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          573..716
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          731..902
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          915..1060
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     CDS             1..1155
                     /gene="HEPH"
                     /coded_by="XM_054075249.1:187..3654"
                     /db_xref="GeneID:104054303"
ORIGIN      
        1 mgsfgwlllc ihtlsptlag gayrvyylgi cevdwdyapm gknvltnesi tqnlkastfl
       61 qpgkdrvgst ykksiykqyt dstytteipk pgwlgflgpl iraevgdtik vhlknfasrp
      121 ytihphgvfy ekdsegslyp dmspqdqkkd davfpggnyt ytwtvpedhs ptaddpnclt
      181 wiyhshidap kdiasgligp lltckkgilt gssqrrqdvd idfflmfsvv denlswylde
      241 niasfctdps svdkedeefq esnkmhaing yvfgnlpevt mcagdyvswh lfgmgnevdv
      301 htayfhgeml svrghrtdva slfpatfvta dmiphnpgrw llscqindhi qagmgalyev
      361 rpcsrqapps tlegrvrkyy iaakevqwdy gpsgldqrtg kqlseagspa eqffkrgpyq
      421 iggvywkaky veytdesfre ekqrseeeeh lgilgpvika evgdtilvtf vnkaswpfsi
      481 qphgvsyeka wegmryhdgq sqngvsvapl hnytyrwtvp qhvgptssdp pcltwmyssa
      541 vnpvkdassg lvgplvickp gtlddnnkqk gidkefyllf svfdenlswy lnanikyylr
      601 meesavkkdd gfeesnrmha inglmfgnll glnvcegdnv swhllglgse advhgavfqg
      661 ntlqmngmrr dsaslfahtf atafmqpdnk gtfeiycqta nhyqagmrer ysvskcgerd
      721 papalqykgv rtyyivaeev vwdyapdrnw ererhnhsae syadvflsne ngllgsrykk
      781 avyreytdgt fqtpktrgng dehlgilgpf lwaevgdiln ivfknnatrp ysihahgvle
      841 retgqpqvan pgdivtyqwe vperagpgpn dsacvpwiyy savdpvkdmy sgligplkic
      901 rrgalqadgi rkdmkrefal lflvfdenrs wyleenvehy skgnhgeisl lddrfvesnk
      961 mhaingrlya tlpgltmfqg ewvnwyllgm gqeidihtvh fhaetfiyrn gksyradvvd
     1021 lfpgtfetve mlvgnpgtwl lhchvsdhih agmeivftvl prpepvlevv nysaelpsed
     1081 ndesekimlf gaklpqgqie atvialsvvg ivlflvacfl lgmviylerq krlrrnrrsi
     1141 lddgfklmsk knsgl
//
LOCUS       XP_053931225            1020 aa            linear   VRT 09-MAR-2023
DEFINITION  hephaestin isoform X2 [Cuculus canorus].
ACCESSION   XP_053931225
VERSION     XP_053931225.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075250.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1020
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1020
                     /product="hephaestin isoform X2"
                     /calculated_mol_wt=115081
     Region          <8..71
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          85..225
                     /region_name="CuRO_2_ceruloplasmin"
                     /note="The second cupredoxin domain of Ceruloplasmin;
                     cd11021"
                     /db_xref="CDD:259907"
     Site            order(87..89,91,95..97,99..102,105..107,110..113,116..117,
                     126..128,130..131,134..144,155..157,159,179,192..194,206,
                     215..217,220)
                     /site_type="other"
                     /note="Domain 1 interface [polypeptide binding]"
                     /db_xref="CDD:259907"
     Site            order(160..162,180,188..192)
                     /site_type="other"
                     /note="Domain 6 interface [polypeptide binding]"
                     /db_xref="CDD:259907"
     Site            order(165,167,169,180,184,186,188,210..214,216)
                     /site_type="other"
                     /note="Domain 4 interface [polypeptide binding]"
                     /db_xref="CDD:259907"
     Site            order(169,174,180..181,183,200..201,204..206,210,212,
                     215..216,222)
                     /site_type="other"
                     /note="Domain 3 interface [polypeptide binding]"
                     /db_xref="CDD:259907"
     Region          239..435
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          438..581
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          596..767
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          780..925
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     CDS             1..1020
                     /gene="HEPH"
                     /coded_by="XM_054075250.1:357..3419"
                     /db_xref="GeneID:104054303"
ORIGIN      
        1 mvfstkrtlk dqkkddavfp ggnytytwtv pedhsptadd pncltwiyhs hidapkdias
       61 gligplltck kgiltgssqr rqdvdidffl mfsvvdenls wyldeniasf ctdpssvdke
      121 deefqesnkm haingyvfgn lpevtmcagd yvswhlfgmg nevdvhtayf hgemlsvrgh
      181 rtdvaslfpa tfvtadmiph npgrwllscq indhiqagmg alyevrpcsr qappstlegr
      241 vrkyyiaake vqwdygpsgl dqrtgkqlse agspaeqffk rgpyqiggvy wkakyveytd
      301 esfreekqrs eeeehlgilg pvikaevgdt ilvtfvnkas wpfsiqphgv syekawegmr
      361 yhdgqsqngv svaplhnyty rwtvpqhvgp tssdppcltw myssavnpvk dassglvgpl
      421 vickpgtldd nnkqkgidke fyllfsvfde nlswylnani kyylrmeesa vkkddgfees
      481 nrmhainglm fgnllglnvc egdnvswhll glgseadvhg avfqgntlqm ngmrrdsasl
      541 fahtfatafm qpdnkgtfei ycqtanhyqa gmrerysvsk cgerdpapal qykgvrtyyi
      601 vaeevvwdya pdrnwererh nhsaesyadv flsnengllg srykkavyre ytdgtfqtpk
      661 trgngdehlg ilgpflwaev gdilnivfkn natrpysiha hgvleretgq pqvanpgdiv
      721 tyqwevpera gpgpndsacv pwiyysavdp vkdmysglig plkicrrgal qadgirkdmk
      781 refallflvf denrswylee nvehyskgnh geisllddrf vesnkmhain grlyatlpgl
      841 tmfqgewvnw yllgmgqeid ihtvhfhaet fiyrngksyr advvdlfpgt fetvemlvgn
      901 pgtwllhchv sdhihagmei vftvlprpep vlevvnysae lpsedndese kimlfgaklp
      961 qgqieatvia lsvvgivlfl vacfllgmvi ylerqkrlrr nrrsilddgf klmskknsgl
//
LOCUS       XP_053931226            1008 aa            linear   VRT 09-MAR-2023
DEFINITION  hephaestin isoform X3 [Cuculus canorus].
ACCESSION   XP_053931226
VERSION     XP_053931226.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075251.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1008
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1008
                     /product="hephaestin isoform X3"
                     /calculated_mol_wt=113241
     Region          24..206
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          220..360
                     /region_name="CuRO_2_ceruloplasmin"
                     /note="The second cupredoxin domain of Ceruloplasmin;
                     cd11021"
                     /db_xref="CDD:259907"
     Site            order(222..224,226,230..232,234..237,240..242,245..248,
                     251..252,261..263,265..266,269..279,290..292,294,314,
                     327..329,341,350..352,355)
                     /site_type="other"
                     /note="Domain 1 interface [polypeptide binding]"
                     /db_xref="CDD:259907"
     Site            order(295..297,315,323..327)
                     /site_type="other"
                     /note="Domain 6 interface [polypeptide binding]"
                     /db_xref="CDD:259907"
     Site            order(300,302,304,315,319,321,323,345..349,351)
                     /site_type="other"
                     /note="Domain 4 interface [polypeptide binding]"
                     /db_xref="CDD:259907"
     Site            order(304,309,315..316,318,335..336,339..341,345,347,
                     350..351,357)
                     /site_type="other"
                     /note="Domain 3 interface [polypeptide binding]"
                     /db_xref="CDD:259907"
     Region          374..570
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          573..716
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          731..902
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     Region          915..>962
                     /region_name="Cupredoxin"
                     /note="Cupredoxin superfamily; cl19115"
                     /db_xref="CDD:473140"
     CDS             1..1008
                     /gene="HEPH"
                     /coded_by="XM_054075251.1:191..3217"
                     /db_xref="GeneID:104054303"
ORIGIN      
        1 mgsfgwlllc ihtlsptlag gayrvyylgi cevdwdyapm gknvltnesi tqnlkastfl
       61 qpgkdrvgst ykksiykqyt dstytteipk pgwlgflgpl iraevgdtik vhlknfasrp
      121 ytihphgvfy ekdsegslyp dmspqdqkkd davfpggnyt ytwtvpedhs ptaddpnclt
      181 wiyhshidap kdiasgligp lltckkgilt gssqrrqdvd idfflmfsvv denlswylde
      241 niasfctdps svdkedeefq esnkmhaing yvfgnlpevt mcagdyvswh lfgmgnevdv
      301 htayfhgeml svrghrtdva slfpatfvta dmiphnpgrw llscqindhi qagmgalyev
      361 rpcsrqapps tlegrvrkyy iaakevqwdy gpsgldqrtg kqlseagspa eqffkrgpyq
      421 iggvywkaky veytdesfre ekqrseeeeh lgilgpvika evgdtilvtf vnkaswpfsi
      481 qphgvsyeka wegmryhdgq sqngvsvapl hnytyrwtvp qhvgptssdp pcltwmyssa
      541 vnpvkdassg lvgplvickp gtlddnnkqk gidkefyllf svfdenlswy lnanikyylr
      601 meesavkkdd gfeesnrmha inglmfgnll glnvcegdnv swhllglgse advhgavfqg
      661 ntlqmngmrr dsaslfahtf atafmqpdnk gtfeiycqta nhyqagmrer ysvskcgerd
      721 papalqykgv rtyyivaeev vwdyapdrnw ererhnhsae syadvflsne ngllgsrykk
      781 avyreytdgt fqtpktrgng dehlgilgpf lwaevgdiln ivfknnatrp ysihahgvle
      841 retgqpqvan pgdivtyqwe vperagpgpn dsacvpwiyy savdpvkdmy sgligplkic
      901 rrgalqadgi rkdmkrefal lflvfdenrs wyleenvehy skgnhgeisl lddrfvesnk
      961 mhemtistgw lqvfsksnqw ealcnlawad hvpgrvgelv pagngagd
//
LOCUS       XP_009553575             420 aa            linear   VRT 09-MAR-2023
DEFINITION  G-protein coupled receptor 83 isoform X1 [Cuculus canorus].
ACCESSION   XP_009553575
VERSION     XP_009553575.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009555280.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..420
                     /product="G-protein coupled receptor 83 isoform X1"
                     /calculated_mol_wt=48135
     Region          69..353
                     /region_name="7tmA_GPR83"
                     /note="G protein-coupled receptor 83, member of the class
                     A family of seven-transmembrane G protein-coupled
                     receptors; cd15389"
                     /db_xref="CDD:320511"
     Region          70..96
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320511"
     Region          103..128
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320511"
     Site            order(125,128..129,141..146,148..149,152,195,197..201,233,
                     236..238,240..242,244..245,302,305..306,308..309,312,
                     320..321,323..325,328,331..332)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:320511"
     Region          141..171
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320511"
     Region          182..203
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320511"
     Region          233..262
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320511"
     Region          282..312
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320511"
     Region          321..346
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320511"
     CDS             1..420
                     /gene="LOC104054302"
                     /coded_by="XM_009555280.2:574..1836"
                     /db_xref="GeneID:104054302"
ORIGIN      
        1 mrrhvwfplq yiskpfwrae nhsttnffsa lygfpnqsff hsdldledlg dfgsgtkyeg
       61 esqsqtvkal livaysviic islfgnilvc hvviknkrmh satslfivnl aiadvmitvl
      121 ntpftlvrfv sstwvfgklm chisrfvqyc svhvsvltla aialdrhqvi mhplkprmsm
      181 vkggiciiii wvmascfslp haiyqtltrf yignrtirmv clpsfpppad lfwkyldltt
      241 fvllyvlpll visitytiva kklwlrnaig dltmeqyyah qrkkkmtlkm lmvvvlvfav
      301 cwfplncyvv liscraihss nalyfafhwf amsstcynpf iycwlnenfr selksllyvc
      361 rrrsaaqsha lqsislpfrh awvenchykr gstcqktras sqrnsaktdi ssvqpivaes
//
LOCUS       XP_053931227             407 aa            linear   VRT 09-MAR-2023
DEFINITION  G-protein coupled receptor 83 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931227
VERSION     XP_053931227.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075252.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..407
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..407
                     /product="G-protein coupled receptor 83 isoform X2"
                     /calculated_mol_wt=46079
     Region          56..340
                     /region_name="7tmA_GPR83"
                     /note="G protein-coupled receptor 83, member of the class
                     A family of seven-transmembrane G protein-coupled
                     receptors; cd15389"
                     /db_xref="CDD:320511"
     Region          57..83
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320511"
     Region          90..115
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320511"
     Site            order(112,115..116,128..133,135..136,139,182,184..188,220,
                     223..225,227..229,231..232,289,292..293,295..296,299,
                     307..308,310..312,315,318..319)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:320511"
     Region          128..158
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320511"
     Region          169..190
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320511"
     Region          220..249
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320511"
     Region          269..299
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320511"
     Region          308..333
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320511"
     CDS             1..407
                     /gene="LOC104054302"
                     /coded_by="XM_054075252.1:1161..2384"
                     /db_xref="GeneID:104054302"
ORIGIN      
        1 mewflcreav dhasapvsfa gaeitdalsd ldledlgdfg sgtkyegesq sqtvkalliv
       61 aysviicisl fgnilvchvv iknkrmhsat slfivnlaia dvmitvlntp ftlvrfvsst
      121 wvfgklmchi srfvqycsvh vsvltlaaia ldrhqvimhp lkprmsmvkg giciiiiwvm
      181 ascfslphai yqtltrfyig nrtirmvclp sfpppadlfw kyldlttfvl lyvlpllvis
      241 itytivakkl wlrnaigdlt meqyyahqrk kkmtlkmlmv vvlvfavcwf plncyvvlis
      301 craihssnal yfafhwfams stcynpfiyc wlnenfrsel ksllyvcrrr saaqshalqs
      361 islpfrhawv enchykrgst cqktrassqr nsaktdissv qpivaes
//
LOCUS       XP_053931229             394 aa            linear   VRT 09-MAR-2023
DEFINITION  G-protein coupled receptor 83 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931229
VERSION     XP_053931229.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075254.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..394
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..394
                     /product="G-protein coupled receptor 83 isoform X3"
                     /calculated_mol_wt=44905
     Region          43..327
                     /region_name="7tmA_GPR83"
                     /note="G protein-coupled receptor 83, member of the class
                     A family of seven-transmembrane G protein-coupled
                     receptors; cd15389"
                     /db_xref="CDD:320511"
     Region          44..70
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320511"
     Region          77..102
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320511"
     Site            order(99,102..103,115..120,122..123,126,169,171..175,207,
                     210..212,214..216,218..219,276,279..280,282..283,286,
                     294..295,297..299,302,305..306)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:320511"
     Region          115..145
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320511"
     Region          156..177
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320511"
     Region          207..236
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320511"
     Region          256..286
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320511"
     Region          295..320
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320511"
     CDS             1..394
                     /gene="LOC104054302"
                     /coded_by="XM_054075254.1:167..1351"
                     /db_xref="GeneID:104054302"
ORIGIN      
        1 mhltekepkh skedqndldl edlgdfgsgt kyegesqsqt vkallivays viicislfgn
       61 ilvchvvikn krmhsatslf ivnlaiadvm itvlntpftl vrfvsstwvf gklmchisrf
      121 vqycsvhvsv ltlaaialdr hqvimhplkp rmsmvkggic iiiiwvmasc fslphaiyqt
      181 ltrfyignrt irmvclpsfp ppadlfwkyl dlttfvllyv lpllvisity tivakklwlr
      241 naigdltmeq yyahqrkkkm tlkmlmvvvl vfavcwfpln cyvvliscra ihssnalyfa
      301 fhwfamsstc ynpfiycwln enfrselksl lyvcrrrsaa qshalqsisl pfrhawvenc
      361 hykrgstcqk trassqrnsa ktdissvqpi vaes
//
LOCUS       XP_053931230             382 aa            linear   VRT 09-MAR-2023
DEFINITION  G-protein coupled receptor 83 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931230
VERSION     XP_053931230.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075255.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..382
                     /product="G-protein coupled receptor 83 isoform X4"
                     /calculated_mol_wt=43361
     Region          31..315
                     /region_name="7tmA_GPR83"
                     /note="G protein-coupled receptor 83, member of the class
                     A family of seven-transmembrane G protein-coupled
                     receptors; cd15389"
                     /db_xref="CDD:320511"
     Region          32..58
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320511"
     Region          65..90
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320511"
     Site            order(87,90..91,103..108,110..111,114,157,159..163,195,
                     198..200,202..204,206..207,264,267..268,270..271,274,
                     282..283,285..287,290,293..294)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:320511"
     Region          103..133
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320511"
     Region          144..165
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320511"
     Region          195..224
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320511"
     Region          244..274
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320511"
     Region          283..308
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320511"
     CDS             1..382
                     /gene="LOC104054302"
                     /coded_by="XM_054075255.1:16..1164"
                     /db_xref="GeneID:104054302"
ORIGIN      
        1 meagdldled lgdfgsgtky egesqsqtvk allivaysvi icislfgnil vchvviknkr
       61 mhsatslfiv nlaiadvmit vlntpftlvr fvsstwvfgk lmchisrfvq ycsvhvsvlt
      121 laaialdrhq vimhplkprm smvkggicii iiwvmascfs lphaiyqtlt rfyignrtir
      181 mvclpsfppp adlfwkyldl ttfvllyvlp llvisityti vakklwlrna igdltmeqyy
      241 ahqrkkkmtl kmlmvvvlvf avcwfplncy vvliscraih ssnalyfafh wfamsstcyn
      301 pfiycwlnen frselkslly vcrrrsaaqs halqsislpf rhawvenchy krgstcqktr
      361 assqrnsakt dissvqpiva es
//
LOCUS       XP_053931231            2449 aa            linear   VRT 09-MAR-2023
DEFINITION  transcriptional regulator ATRX isoform X1 [Cuculus canorus].
ACCESSION   XP_053931231
VERSION     XP_053931231.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075256.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2449
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2449
                     /product="transcriptional regulator ATRX isoform X1"
                     /calculated_mol_wt=277168
     Region          191..294
                     /region_name="ADDz_ATRX"
                     /note="ADDz domain found in ATRX (alpha-thalassemia/mental
                     retardation, X-linked); cd11726"
                     /db_xref="CDD:277252"
     Site            order(236,238,241,250..255,265,287)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:277252"
     Region          <439..1090
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          <1504..2149
                     /region_name="HepA"
                     /note="Superfamily II DNA or RNA helicase, SNF2 family
                     [Transcription, Replication, recombination, and repair];
                     COG0553"
                     /db_xref="CDD:440319"
     Region          1521..1764
                     /region_name="DEXHc_ATRX"
                     /note="DEXH-box helicase domain of ATRX; cd18068"
                     /db_xref="CDD:350826"
     Site            order(1557..1563,1598,1680..1681)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350826"
     CDS             1..2449
                     /gene="ATRX"
                     /coded_by="XM_054075256.1:16..7365"
                     /db_xref="GeneID:104058218"
ORIGIN      
        1 mkrcdgahgc rshlravwkg rrrtarvqsl gesklntlvq klhdflahss eesedanspp
       61 asknktagks repksspaam ennreegsss sertksigss rskrkptfvt kyvgsddeqv
      121 ldetvnedis nensendvdm kslpkgtvvv qpepvlnedk ddfkgpefrs rntvkmkpea
      181 pkkrgeeglh givsctacgq qvnhfqkdsi yrhptlkvli cktcykyyms ddisrdsdgm
      241 deqcrwcaeg gnliccdfch nafckkcilr nlgrkelsti ldennqwhcy ichpeplldl
      301 vtacdsvfen leqllqqnkk kirveseksk iydhadkfsp krnnsncnge ekklddsysg
      361 svtysykalm vpkdlvkktk kliettanln srfvsflkna lenvemsptv qlcqlkafks
      421 vlsdmkkthl aleeglnmei qalsdkikdk ntkekktdvr sekneqkkde gkehvslked
      481 dtvktekkvv aeqpdsepmd qsvptmeqtd dkptsgedkk sgsneepqya pnstealdmd
      541 ivsipssvpe difetlesam eiqvasdeqd ggntgtdhet snsntksnaa vkdtkggtkl
      601 kssakgtkel ivkltpvsls ecavkaeeqd rnlekgseda deipgaengv svkqnhkads
      661 khsvenetvs haeesdlrrs prvkttplrr qtdispltsn seedsndtcn ekrkssqqpr
      721 rkndkrsssd saidgpspdk pskskkpyvl dhssdsdemp avlkeaammn hsssdiesns
      781 eapandqkts dvlknqpgkd engkrkrkss ssgsdleakr gklaknstat kkkrqnysds
      841 snydseleke ikilskiesa kkakkkysrk edsydsseee qrkkvskrkm nlrkkrgkss
      901 edddtekscp ekevnhspkd kkagkgsaak ertkkdlkek tvkekhdess dvekslleke
      961 escprggkqt egkkskdlrk kktqedssse steksakkeh ssdsqkerik nkkgseskae
     1021 ksekvkkegh kkeqgdsssd veksppekgs gnssendrtk nepvlkekkr rnlreraser
     1081 vrldlssdae klplkeesss edtvrrkkqt ktkekkkish kkkmskkdqs dsssssdees
     1141 yedskkktkr gsmkeskksn lkkkvskkkv vvtsssssde eendeqnstg dgssdeqkim
     1201 pvtenlvlst gtgfcqssgd egeaksravp meeeeddddd dpenriakkm lleeikanls
     1261 sdedassdde sdkgkkktgk qnentaddee kekeensesd seeeesskkp ryrhrllrhk
     1321 ltvsdgesee kseekkvkpk ekkegkrrnr rkvssddsnd sefhesavse evseseddqr
     1381 prtrsakkae aeenqrsykq kkkrrrikvq edsssdndnk snseneendd skspgkgrkk
     1441 irkiikddkl rtetqnalke eeerrkriae rerereklre vieiedaspl kcpittklvl
     1501 dedeetkepl vqvhrsivtr lkphqvdgvq fmwdcccesv kktktspgsg cilahcmglg
     1561 ktlqvvsflh tvllcdkldf rtalvvcpln talnwlnefe kwqegledde klevcelatv
     1621 krpqersyml qrwqdeggvm iigyemyrnl aqgrnvksrk lkeifnkalv dpgpdfvvcd
     1681 eghilkneas avskamnsir srrriiltgt plqnnlieyh cmvnfikenl lgsikefrnr
     1741 finpiqngqc adstlvdvrv mkkrahilye mlagcvqrkd ytaltkflpp kyeyvlevrm
     1801 tpiqcklyqy yldhltgvgg gneggrgkag aklfqdfqml sriwthpwcl qldyiskenk
     1861 gyfdedslde fiasdsdets mslssddyak kkkskgkkvr kecsssgsgs dndvevikvw
     1921 nsrsrgggdg naeelannps ksdegkgass snpgspapdw ykdfvtdada evlehsgkmv
     1981 llfeilrmae elgdkvlvfs qslisldlie dflelanrek nekdktpiyk gegkwfrnid
     2041 yyrldgstta qsrkkwaeef ndetnvrgrl fiistkagsl ginlvaanrv iifdaswnps
     2101 ydiqsifrvy rfgqskpvfv yrflaqgtme dkiydrqvtk qslsfrvvdq qqverhftmn
     2161 eltelytfep dllddpnsek kkkrdtpllp kdtilaellq ihkeyivgyh ehdslldhke
     2221 eeelteeerk aawaeyeaek kgltmrfnmp agtnmlptnf nsqtpyipfn lgalsamsnq
     2281 qledlinqgr ekvveatnsv taariqpled iistiwkenv tltesqvqal alsrqasqel
     2341 dvkrreaiyn dvltkqqmli gcvqrilmnr rlqqqynqqq qqmsyqqaam shlmmpkppn
     2401 limnpsnyqq idmrgmyqsv sggmqppplq rapppmrgkn agpsqgksm
//
LOCUS       XP_053931232            2448 aa            linear   VRT 09-MAR-2023
DEFINITION  transcriptional regulator ATRX isoform X2 [Cuculus canorus].
ACCESSION   XP_053931232
VERSION     XP_053931232.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075257.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2448
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2448
                     /product="transcriptional regulator ATRX isoform X2"
                     /calculated_mol_wt=277039
     Region          191..294
                     /region_name="ADDz_ATRX"
                     /note="ADDz domain found in ATRX (alpha-thalassemia/mental
                     retardation, X-linked); cd11726"
                     /db_xref="CDD:277252"
     Site            order(236,238,241,250..255,265,287)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:277252"
     Region          <439..1090
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          <1503..2148
                     /region_name="HepA"
                     /note="Superfamily II DNA or RNA helicase, SNF2 family
                     [Transcription, Replication, recombination, and repair];
                     COG0553"
                     /db_xref="CDD:440319"
     Region          1520..1763
                     /region_name="DEXHc_ATRX"
                     /note="DEXH-box helicase domain of ATRX; cd18068"
                     /db_xref="CDD:350826"
     Site            order(1556..1562,1597,1679..1680)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350826"
     CDS             1..2448
                     /gene="ATRX"
                     /coded_by="XM_054075257.1:16..7362"
                     /db_xref="GeneID:104058218"
ORIGIN      
        1 mkrcdgahgc rshlravwkg rrrtarvqsl gesklntlvq klhdflahss eesedanspp
       61 asknktagks repksspaam ennreegsss sertksigss rskrkptfvt kyvgsddeqv
      121 ldetvnedis nensendvdm kslpkgtvvv qpepvlnedk ddfkgpefrs rntvkmkpea
      181 pkkrgeeglh givsctacgq qvnhfqkdsi yrhptlkvli cktcykyyms ddisrdsdgm
      241 deqcrwcaeg gnliccdfch nafckkcilr nlgrkelsti ldennqwhcy ichpeplldl
      301 vtacdsvfen leqllqqnkk kirveseksk iydhadkfsp krnnsncnge ekklddsysg
      361 svtysykalm vpkdlvkktk kliettanln srfvsflkna lenvemsptv qlcqlkafks
      421 vlsdmkkthl aleeglnmei qalsdkikdk ntkekktdvr sekneqkkde gkehvslked
      481 dtvktekkvv aeqpdsepmd qsvptmeqtd dkptsgedkk sgsneepqya pnstealdmd
      541 ivsipssvpe difetlesam eiqvasdeqd ggntgtdhet snsntksnaa vkdtkggtkl
      601 kssakgtkel ivkltpvsls ecavkaeeqd rnlekgseda deipgaengv svkqnhkads
      661 khsvenetvs haeesdlrrs prvkttplrr qtdispltsn seedsndtcn ekrkssqqpr
      721 rkndkrsssd saidgpspdk pskskkpyvl dhssdsdemp avlkeaammn hsssdiesns
      781 eapandqkts dvlknqpgkd engkrkrkss ssgsdleakr gklaknstat kkkrqnysds
      841 snydseleke ikilskiesa kkakkkysrk edsydsseee qrkkvskrkm nlrkkrgkss
      901 edddtekscp ekevnhspkd kkagkgsaak ertkkdlkek tvkekhdess dvekslleke
      961 escprggkqt egkkskdlrk kktqedssse steksakkeh ssdsqkerik nkkgseskae
     1021 ksekvkkegh kkeqgdsssd veksppekgs gnssendrtk nepvlkekkr rnlreraser
     1081 vrldlssdae klplkeesss edtvrrkkqt ktkekkkish kkkmskkdqs dsssssdees
     1141 yedskkktkr gsmkeskksn lkkkvskkkv vvtsssssde eendeqnstg dgssdeqkim
     1201 pvtenlvlst gtgfcqssgd egeaksravp meeeeddddd dpenriakkm lleeikanls
     1261 sdedassdde sdkgkkktgk qnentaddek ekeensesds eeeesskkpr yrhrllrhkl
     1321 tvsdgeseek seekkvkpke kkegkrrnrr kvssddsnds efhesavsee vseseddqrp
     1381 rtrsakkaea eenqrsykqk kkrrrikvqe dsssdndnks nseneendds kspgkgrkki
     1441 rkiikddklr tetqnalkee eerrkriaer erereklrev ieiedasplk cpittklvld
     1501 edeetkeplv qvhrsivtrl kphqvdgvqf mwdcccesvk ktktspgsgc ilahcmglgk
     1561 tlqvvsflht vllcdkldfr talvvcplnt alnwlnefek wqegleddek levcelatvk
     1621 rpqersymlq rwqdeggvmi igyemyrnla qgrnvksrkl keifnkalvd pgpdfvvcde
     1681 ghilkneasa vskamnsirs rrriiltgtp lqnnlieyhc mvnfikenll gsikefrnrf
     1741 inpiqngqca dstlvdvrvm kkrahilyem lagcvqrkdy taltkflppk yeyvlevrmt
     1801 piqcklyqyy ldhltgvggg neggrgkaga klfqdfqmls riwthpwclq ldyiskenkg
     1861 yfdedsldef iasdsdetsm slssddyakk kkskgkkvrk ecsssgsgsd ndvevikvwn
     1921 srsrgggdgn aeelannpsk sdegkgasss npgspapdwy kdfvtdadae vlehsgkmvl
     1981 lfeilrmaee lgdkvlvfsq slisldlied flelanrekn ekdktpiykg egkwfrnidy
     2041 yrldgsttaq srkkwaeefn detnvrgrlf iistkagslg inlvaanrvi ifdaswnpsy
     2101 diqsifrvyr fgqskpvfvy rflaqgtmed kiydrqvtkq slsfrvvdqq qverhftmne
     2161 ltelytfepd llddpnsekk kkrdtpllpk dtilaellqi hkeyivgyhe hdslldhkee
     2221 eelteeerka awaeyeaekk gltmrfnmpa gtnmlptnfn sqtpyipfnl galsamsnqq
     2281 ledlinqgre kvveatnsvt aariqpledi istiwkenvt ltesqvqala lsrqasqeld
     2341 vkrreaiynd vltkqqmlig cvqrilmnrr lqqqynqqqq qmsyqqaams hlmmpkppnl
     2401 imnpsnyqqi dmrgmyqsvs ggmqppplqr apppmrgkna gpsqgksm
//
LOCUS       XP_053931233            2425 aa            linear   VRT 09-MAR-2023
DEFINITION  transcriptional regulator ATRX isoform X3 [Cuculus canorus].
ACCESSION   XP_053931233
VERSION     XP_053931233.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075258.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2425
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2425
                     /product="transcriptional regulator ATRX isoform X3"
                     /calculated_mol_wt=274309
     Region          167..270
                     /region_name="ADDz_ATRX"
                     /note="ADDz domain found in ATRX (alpha-thalassemia/mental
                     retardation, X-linked); cd11726"
                     /db_xref="CDD:277252"
     Site            order(212,214,217,226..231,241,263)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:277252"
     Region          <415..1066
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          <1480..2125
                     /region_name="HepA"
                     /note="Superfamily II DNA or RNA helicase, SNF2 family
                     [Transcription, Replication, recombination, and repair];
                     COG0553"
                     /db_xref="CDD:440319"
     Region          1497..1740
                     /region_name="DEXHc_ATRX"
                     /note="DEXH-box helicase domain of ATRX; cd18068"
                     /db_xref="CDD:350826"
     Site            order(1533..1539,1574,1656..1657)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350826"
     CDS             1..2425
                     /gene="ATRX"
                     /coded_by="XM_054075258.1:156..7433"
                     /db_xref="GeneID:104058218"
ORIGIN      
        1 mtaepgsesk lntlvqklhd flahsseese dansppaskn ktagksrepk sspaamennr
       61 eegssssert ksigssrskr kptfvtkyvg sddeqvldet vnedisnens endvdmkslp
      121 kgtvvvqpep vlnedkddfk gpefrsrntv kmkpeapkkr geeglhgivs ctacgqqvnh
      181 fqkdsiyrhp tlkvlicktc ykyymsddis rdsdgmdeqc rwcaeggnli ccdfchnafc
      241 kkcilrnlgr kelstilden nqwhcyichp eplldlvtac dsvfenleql lqqnkkkirv
      301 esekskiydh adkfspkrnn sncngeekkl ddsysgsvty sykalmvpkd lvkktkklie
      361 ttanlnsrfv sflknalenv emsptvqlcq lkafksvlsd mkkthlalee glnmeiqals
      421 dkikdkntke kktdvrsekn eqkkdegkeh vslkeddtvk tekkvvaeqp dsepmdqsvp
      481 tmeqtddkpt sgedkksgsn eepqyapnst ealdmdivsi pssvpedife tlesameiqv
      541 asdeqdggnt gtdhetsnsn tksnaavkdt kggtklkssa kgtkelivkl tpvslsecav
      601 kaeeqdrnle kgsedadeip gaengvsvkq nhkadskhsv enetvshaee sdlrrsprvk
      661 ttplrrqtdi spltsnseed sndtcnekrk ssqqprrknd krsssdsaid gpspdkpsks
      721 kkpyvldhss dsdempavlk eaammnhsss diesnseapa ndqktsdvlk nqpgkdengk
      781 rkrkssssgs dleakrgkla knstatkkkr qnysdssnyd selekeikil skiesakkak
      841 kkysrkedsy dsseeeqrkk vskrkmnlrk krgksseddd tekscpekev nhspkdkkag
      901 kgsaakertk kdlkektvke khdessdvek sllekeescp rggkqtegkk skdlrkkktq
      961 edsssestek sakkehssds qkeriknkkg seskaeksek vkkeghkkeq gdsssdveks
     1021 ppekgsgnss endrtknepv lkekkrrnlr eraservrld lssdaeklpl keesssedtv
     1081 rrkkqtktke kkkishkkkm skkdqsdsss ssdeesyeds kkktkrgsmk eskksnlkkk
     1141 vskkkvvvts ssssdeeend eqnstgdgss deqkimpvte nlvlstgtgf cqssgdegea
     1201 ksravpmeee eddddddpen riakkmllee ikanlssded assddesdkg kkktgkqnen
     1261 taddeekeke ensesdseee esskkpryrh rllrhkltvs dgeseeksee kkvkpkekke
     1321 gkrrnrrkvs sddsndsefh esavseevse seddqrprtr sakkaeaeen qrsykqkkkr
     1381 rrikvqedss sdndnksnse neenddsksp gkgrkkirki ikddklrtet qnalkeeeer
     1441 rkriaerere reklreviei edasplkcpi ttklvldede etkeplvqvh rsivtrlkph
     1501 qvdgvqfmwd cccesvkktk tspgsgcila hcmglgktlq vvsflhtvll cdkldfrtal
     1561 vvcplntaln wlnefekwqe gleddeklev celatvkrpq ersymlqrwq deggvmiigy
     1621 emyrnlaqgr nvksrklkei fnkalvdpgp dfvvcdeghi lkneasavsk amnsirsrrr
     1681 iiltgtplqn nlieyhcmvn fikenllgsi kefrnrfinp iqngqcadst lvdvrvmkkr
     1741 ahilyemlag cvqrkdytal tkflppkyey vlevrmtpiq cklyqyyldh ltgvgggneg
     1801 grgkagaklf qdfqmlsriw thpwclqldy iskenkgyfd edsldefias dsdetsmsls
     1861 sddyakkkks kgkkvrkecs ssgsgsdndv evikvwnsrs rgggdgnaee lannpsksde
     1921 gkgasssnpg spapdwykdf vtdadaevle hsgkmvllfe ilrmaeelgd kvlvfsqsli
     1981 sldliedfle lanreknekd ktpiykgegk wfrnidyyrl dgsttaqsrk kwaeefndet
     2041 nvrgrlfiis tkagslginl vaanrviifd aswnpsydiq sifrvyrfgq skpvfvyrfl
     2101 aqgtmedkiy drqvtkqsls frvvdqqqve rhftmnelte lytfepdlld dpnsekkkkr
     2161 dtpllpkdti laellqihke yivgyhehds lldhkeeeel teeerkaawa eyeaekkglt
     2221 mrfnmpagtn mlptnfnsqt pyipfnlgal samsnqqled linqgrekvv eatnsvtaar
     2281 iqplediist iwkenvtlte sqvqalalsr qasqeldvkr reaiyndvlt kqqmligcvq
     2341 rilmnrrlqq qynqqqqqms yqqaamshlm mpkppnlimn psnyqqidmr gmyqsvsggm
     2401 qppplqrapp pmrgknagps qgksm
//
LOCUS       XP_053931234            2424 aa            linear   VRT 09-MAR-2023
DEFINITION  transcriptional regulator ATRX isoform X4 [Cuculus canorus].
ACCESSION   XP_053931234
VERSION     XP_053931234.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075259.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2424
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2424
                     /product="transcriptional regulator ATRX isoform X4"
                     /calculated_mol_wt=274407
     Region          166..269
                     /region_name="ADDz_ATRX"
                     /note="ADDz domain found in ATRX (alpha-thalassemia/mental
                     retardation, X-linked); cd11726"
                     /db_xref="CDD:277252"
     Site            order(211,213,216,225..230,240,262)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:277252"
     Region          <414..1065
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          <1479..2124
                     /region_name="HepA"
                     /note="Superfamily II DNA or RNA helicase, SNF2 family
                     [Transcription, Replication, recombination, and repair];
                     COG0553"
                     /db_xref="CDD:440319"
     Region          1496..1739
                     /region_name="DEXHc_ATRX"
                     /note="DEXH-box helicase domain of ATRX; cd18068"
                     /db_xref="CDD:350826"
     Site            order(1532..1538,1573,1655..1656)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350826"
     CDS             1..2424
                     /gene="ATRX"
                     /coded_by="XM_054075259.1:16..7290"
                     /db_xref="GeneID:104058218"
ORIGIN      
        1 mrrnnveskl ntlvqklhdf lahsseesed ansppasknk tagksrepks spaamennre
       61 egssssertk sigssrskrk ptfvtkyvgs ddeqvldetv nedisnense ndvdmkslpk
      121 gtvvvqpepv lnedkddfkg pefrsrntvk mkpeapkkrg eeglhgivsc tacgqqvnhf
      181 qkdsiyrhpt lkvlicktcy kyymsddisr dsdgmdeqcr wcaeggnlic cdfchnafck
      241 kcilrnlgrk elstildenn qwhcyichpe plldlvtacd svfenleqll qqnkkkirve
      301 sekskiydha dkfspkrnns ncngeekkld dsysgsvtys ykalmvpkdl vkktkkliet
      361 tanlnsrfvs flknalenve msptvqlcql kafksvlsdm kkthlaleeg lnmeiqalsd
      421 kikdkntkek ktdvrsekne qkkdegkehv slkeddtvkt ekkvvaeqpd sepmdqsvpt
      481 meqtddkpts gedkksgsne epqyapnste aldmdivsip ssvpedifet lesameiqva
      541 sdeqdggntg tdhetsnsnt ksnaavkdtk ggtklkssak gtkelivklt pvslsecavk
      601 aeeqdrnlek gsedadeipg aengvsvkqn hkadskhsve netvshaees dlrrsprvkt
      661 tplrrqtdis pltsnseeds ndtcnekrks sqqprrkndk rsssdsaidg pspdkpsksk
      721 kpyvldhssd sdempavlke aammnhsssd iesnseapan dqktsdvlkn qpgkdengkr
      781 krkssssgsd leakrgklak nstatkkkrq nysdssnyds elekeikils kiesakkakk
      841 kysrkedsyd sseeeqrkkv skrkmnlrkk rgkssedddt ekscpekevn hspkdkkagk
      901 gsaakertkk dlkektvkek hdessdveks llekeescpr ggkqtegkks kdlrkkktqe
      961 dsssesteks akkehssdsq keriknkkgs eskaeksekv kkeghkkeqg dsssdveksp
     1021 pekgsgnsse ndrtknepvl kekkrrnlre raservrldl ssdaeklplk eesssedtvr
     1081 rkkqtktkek kkishkkkms kkdqsdssss sdeesyedsk kktkrgsmke skksnlkkkv
     1141 skkkvvvtss sssdeeende qnstgdgssd eqkimpvten lvlstgtgfc qssgdegeak
     1201 sravpmeeee ddddddpenr iakkmlleei kanlssdeda ssddesdkgk kktgkqnent
     1261 addeekekee nsesdseeee sskkpryrhr llrhkltvsd geseekseek kvkpkekkeg
     1321 krrnrrkvss ddsndsefhe savseevses eddqrprtrs akkaeaeenq rsykqkkkrr
     1381 rikvqedsss dndnksnsen eenddskspg kgrkkirkii kddklrtetq nalkeeeerr
     1441 kriaererer eklrevieie dasplkcpit tklvldedee tkeplvqvhr sivtrlkphq
     1501 vdgvqfmwdc ccesvkktkt spgsgcilah cmglgktlqv vsflhtvllc dkldfrtalv
     1561 vcplntalnw lnefekwqeg leddeklevc elatvkrpqe rsymlqrwqd eggvmiigye
     1621 myrnlaqgrn vksrklkeif nkalvdpgpd fvvcdeghil kneasavska mnsirsrrri
     1681 iltgtplqnn lieyhcmvnf ikenllgsik efrnrfinpi qngqcadstl vdvrvmkkra
     1741 hilyemlagc vqrkdytalt kflppkyeyv levrmtpiqc klyqyyldhl tgvgggnegg
     1801 rgkagaklfq dfqmlsriwt hpwclqldyi skenkgyfde dsldefiasd sdetsmslss
     1861 ddyakkkksk gkkvrkecss sgsgsdndve vikvwnsrsr gggdgnaeel annpsksdeg
     1921 kgasssnpgs papdwykdfv tdadaevleh sgkmvllfei lrmaeelgdk vlvfsqslis
     1981 ldliedflel anreknekdk tpiykgegkw frnidyyrld gsttaqsrkk waeefndetn
     2041 vrgrlfiist kagslginlv aanrviifda swnpsydiqs ifrvyrfgqs kpvfvyrfla
     2101 qgtmedkiyd rqvtkqslsf rvvdqqqver hftmneltel ytfepdlldd pnsekkkkrd
     2161 tpllpkdtil aellqihkey ivgyhehdsl ldhkeeeelt eeerkaawae yeaekkgltm
     2221 rfnmpagtnm lptnfnsqtp yipfnlgals amsnqqledl inqgrekvve atnsvtaari
     2281 qplediisti wkenvtltes qvqalalsrq asqeldvkrr eaiyndvltk qqmligcvqr
     2341 ilmnrrlqqq ynqqqqqmsy qqaamshlmm pkppnlimnp snyqqidmrg myqsvsggmq
     2401 ppplqrappp mrgknagpsq gksm
//
LOCUS       XP_053931235            2409 aa            linear   VRT 09-MAR-2023
DEFINITION  transcriptional regulator ATRX isoform X5 [Cuculus canorus].
ACCESSION   XP_053931235
VERSION     XP_053931235.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075260.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2409
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2409
                     /product="transcriptional regulator ATRX isoform X5"
                     /calculated_mol_wt=272661
     Region          151..254
                     /region_name="ADDz_ATRX"
                     /note="ADDz domain found in ATRX (alpha-thalassemia/mental
                     retardation, X-linked); cd11726"
                     /db_xref="CDD:277252"
     Site            order(196,198,201,210..215,225,247)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:277252"
     Region          <399..1050
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          <1464..2109
                     /region_name="HepA"
                     /note="Superfamily II DNA or RNA helicase, SNF2 family
                     [Transcription, Replication, recombination, and repair];
                     COG0553"
                     /db_xref="CDD:440319"
     Region          1481..1724
                     /region_name="DEXHc_ATRX"
                     /note="DEXH-box helicase domain of ATRX; cd18068"
                     /db_xref="CDD:350826"
     Site            order(1517..1523,1558,1640..1641)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350826"
     CDS             1..2409
                     /gene="ATRX"
                     /coded_by="XM_054075260.1:16..7245"
                     /db_xref="GeneID:104058218"
ORIGIN      
        1 mkrcdgahgc rshlravwkg rrrtarvqsl gesklntlvq klhdflahss eesedanspp
       61 asknktagks repksspaam ennreegsss sertksigss rskrkptfvt kyvgsddeqv
      121 ldetvnedis nensendvdm kslpkeeglh givsctacgq qvnhfqkdsi yrhptlkvli
      181 cktcykyyms ddisrdsdgm deqcrwcaeg gnliccdfch nafckkcilr nlgrkelsti
      241 ldennqwhcy ichpeplldl vtacdsvfen leqllqqnkk kirveseksk iydhadkfsp
      301 krnnsncnge ekklddsysg svtysykalm vpkdlvkktk kliettanln srfvsflkna
      361 lenvemsptv qlcqlkafks vlsdmkkthl aleeglnmei qalsdkikdk ntkekktdvr
      421 sekneqkkde gkehvslked dtvktekkvv aeqpdsepmd qsvptmeqtd dkptsgedkk
      481 sgsneepqya pnstealdmd ivsipssvpe difetlesam eiqvasdeqd ggntgtdhet
      541 snsntksnaa vkdtkggtkl kssakgtkel ivkltpvsls ecavkaeeqd rnlekgseda
      601 deipgaengv svkqnhkads khsvenetvs haeesdlrrs prvkttplrr qtdispltsn
      661 seedsndtcn ekrkssqqpr rkndkrsssd saidgpspdk pskskkpyvl dhssdsdemp
      721 avlkeaammn hsssdiesns eapandqkts dvlknqpgkd engkrkrkss ssgsdleakr
      781 gklaknstat kkkrqnysds snydseleke ikilskiesa kkakkkysrk edsydsseee
      841 qrkkvskrkm nlrkkrgkss edddtekscp ekevnhspkd kkagkgsaak ertkkdlkek
      901 tvkekhdess dvekslleke escprggkqt egkkskdlrk kktqedssse steksakkeh
      961 ssdsqkerik nkkgseskae ksekvkkegh kkeqgdsssd veksppekgs gnssendrtk
     1021 nepvlkekkr rnlreraser vrldlssdae klplkeesss edtvrrkkqt ktkekkkish
     1081 kkkmskkdqs dsssssdees yedskkktkr gsmkeskksn lkkkvskkkv vvtsssssde
     1141 eendeqnstg dgssdeqkim pvtenlvlst gtgfcqssgd egeaksravp meeeeddddd
     1201 dpenriakkm lleeikanls sdedassdde sdkgkkktgk qnentaddee kekeensesd
     1261 seeeesskkp ryrhrllrhk ltvsdgesee kseekkvkpk ekkegkrrnr rkvssddsnd
     1321 sefhesavse evseseddqr prtrsakkae aeenqrsykq kkkrrrikvq edsssdndnk
     1381 snseneendd skspgkgrkk irkiikddkl rtetqnalke eeerrkriae rerereklre
     1441 vieiedaspl kcpittklvl dedeetkepl vqvhrsivtr lkphqvdgvq fmwdcccesv
     1501 kktktspgsg cilahcmglg ktlqvvsflh tvllcdkldf rtalvvcpln talnwlnefe
     1561 kwqegledde klevcelatv krpqersyml qrwqdeggvm iigyemyrnl aqgrnvksrk
     1621 lkeifnkalv dpgpdfvvcd eghilkneas avskamnsir srrriiltgt plqnnlieyh
     1681 cmvnfikenl lgsikefrnr finpiqngqc adstlvdvrv mkkrahilye mlagcvqrkd
     1741 ytaltkflpp kyeyvlevrm tpiqcklyqy yldhltgvgg gneggrgkag aklfqdfqml
     1801 sriwthpwcl qldyiskenk gyfdedslde fiasdsdets mslssddyak kkkskgkkvr
     1861 kecsssgsgs dndvevikvw nsrsrgggdg naeelannps ksdegkgass snpgspapdw
     1921 ykdfvtdada evlehsgkmv llfeilrmae elgdkvlvfs qslisldlie dflelanrek
     1981 nekdktpiyk gegkwfrnid yyrldgstta qsrkkwaeef ndetnvrgrl fiistkagsl
     2041 ginlvaanrv iifdaswnps ydiqsifrvy rfgqskpvfv yrflaqgtme dkiydrqvtk
     2101 qslsfrvvdq qqverhftmn eltelytfep dllddpnsek kkkrdtpllp kdtilaellq
     2161 ihkeyivgyh ehdslldhke eeelteeerk aawaeyeaek kgltmrfnmp agtnmlptnf
     2221 nsqtpyipfn lgalsamsnq qledlinqgr ekvveatnsv taariqpled iistiwkenv
     2281 tltesqvqal alsrqasqel dvkrreaiyn dvltkqqmli gcvqrilmnr rlqqqynqqq
     2341 qqmsyqqaam shlmmpkppn limnpsnyqq idmrgmyqsv sggmqppplq rapppmrgkn
     2401 agpsqgksm
//
LOCUS       XP_053931236            2370 aa            linear   VRT 09-MAR-2023
DEFINITION  transcriptional regulator ATRX isoform X6 [Cuculus canorus].
ACCESSION   XP_053931236
VERSION     XP_053931236.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075261.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2370
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2370
                     /product="transcriptional regulator ATRX isoform X6"
                     /calculated_mol_wt=268533
     Region          112..215
                     /region_name="ADDz_ATRX"
                     /note="ADDz domain found in ATRX (alpha-thalassemia/mental
                     retardation, X-linked); cd11726"
                     /db_xref="CDD:277252"
     Site            order(157,159,162,171..176,186,208)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:277252"
     Region          <360..1011
                     /region_name="PTZ00121"
                     /note="MAEBL; Provisional"
                     /db_xref="CDD:173412"
     Region          <1425..2070
                     /region_name="HepA"
                     /note="Superfamily II DNA or RNA helicase, SNF2 family
                     [Transcription, Replication, recombination, and repair];
                     COG0553"
                     /db_xref="CDD:440319"
     Region          1442..1685
                     /region_name="DEXHc_ATRX"
                     /note="DEXH-box helicase domain of ATRX; cd18068"
                     /db_xref="CDD:350826"
     Site            order(1478..1484,1519,1601..1602)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350826"
     CDS             1..2370
                     /gene="ATRX"
                     /coded_by="XM_054075261.1:166..7278"
                     /db_xref="GeneID:104058218"
ORIGIN      
        1 mennreegss ssertksigs srskrkptfv tkyvgsddeq vldetvnedi snensendvd
       61 mkslpkgtvv vqpepvlned kddfkgpefr srntvkmkpe apkkrgeegl hgivsctacg
      121 qqvnhfqkds iyrhptlkvl icktcykyym sddisrdsdg mdeqcrwcae ggnliccdfc
      181 hnafckkcil rnlgrkelst ildennqwhc yichpeplld lvtacdsvfe nleqllqqnk
      241 kkirveseks kiydhadkfs pkrnnsncng eekklddsys gsvtysykal mvpkdlvkkt
      301 kkliettanl nsrfvsflkn alenvemspt vqlcqlkafk svlsdmkkth laleeglnme
      361 iqalsdkikd kntkekktdv rsekneqkkd egkehvslke ddtvktekkv vaeqpdsepm
      421 dqsvptmeqt ddkptsgedk ksgsneepqy apnstealdm divsipssvp edifetlesa
      481 meiqvasdeq dggntgtdhe tsnsntksna avkdtkggtk lkssakgtke livkltpvsl
      541 secavkaeeq drnlekgsed adeipgaeng vsvkqnhkad skhsvenetv shaeesdlrr
      601 sprvkttplr rqtdisplts nseedsndtc nekrkssqqp rrkndkrsss dsaidgpspd
      661 kpskskkpyv ldhssdsdem pavlkeaamm nhsssdiesn seapandqkt sdvlknqpgk
      721 dengkrkrks sssgsdleak rgklaknsta tkkkrqnysd ssnydselek eikilskies
      781 akkakkkysr kedsydssee eqrkkvskrk mnlrkkrgks sedddteksc pekevnhspk
      841 dkkagkgsaa kertkkdlke ktvkekhdes sdveksllek eescprggkq tegkkskdlr
      901 kkktqedsss esteksakke hssdsqkeri knkkgseska eksekvkkeg hkkeqgdsss
      961 dveksppekg sgnssendrt knepvlkekk rrnlrerase rvrldlssda eklplkeess
     1021 sedtvrrkkq tktkekkkis hkkkmskkdq sdsssssdee syedskkktk rgsmkeskks
     1081 nlkkkvskkk vvvtsssssd eeendeqnst gdgssdeqki mpvtenlvls tgtgfcqssg
     1141 degeaksrav pmeeeedddd ddpenriakk mlleeikanl ssdedassdd esdkgkkktg
     1201 kqnentadde ekekeenses dseeeesskk pryrhrllrh kltvsdgese ekseekkvkp
     1261 kekkegkrrn rrkvssddsn dsefhesavs eevseseddq rprtrsakka eaeenqrsyk
     1321 qkkkrrrikv qedsssdndn ksnseneend dskspgkgrk kirkiikddk lrtetqnalk
     1381 eeeerrkria ererereklr evieiedasp lkcpittklv ldedeetkep lvqvhrsivt
     1441 rlkphqvdgv qfmwdccces vkktktspgs gcilahcmgl gktlqvvsfl htvllcdkld
     1501 frtalvvcpl ntalnwlnef ekwqegledd eklevcelat vkrpqersym lqrwqdeggv
     1561 miigyemyrn laqgrnvksr klkeifnkal vdpgpdfvvc deghilknea savskamnsi
     1621 rsrrriiltg tplqnnliey hcmvnfiken llgsikefrn rfinpiqngq cadstlvdvr
     1681 vmkkrahily emlagcvqrk dytaltkflp pkyeyvlevr mtpiqcklyq yyldhltgvg
     1741 ggneggrgka gaklfqdfqm lsriwthpwc lqldyisken kgyfdedsld efiasdsdet
     1801 smslssddya kkkkskgkkv rkecsssgsg sdndvevikv wnsrsrgggd gnaeelannp
     1861 sksdegkgas ssnpgspapd wykdfvtdad aevlehsgkm vllfeilrma eelgdkvlvf
     1921 sqslisldli edflelanre knekdktpiy kgegkwfrni dyyrldgstt aqsrkkwaee
     1981 fndetnvrgr lfiistkags lginlvaanr viifdaswnp sydiqsifrv yrfgqskpvf
     2041 vyrflaqgtm edkiydrqvt kqslsfrvvd qqqverhftm neltelytfe pdllddpnse
     2101 kkkkrdtpll pkdtilaell qihkeyivgy hehdslldhk eeeelteeer kaawaeyeae
     2161 kkgltmrfnm pagtnmlptn fnsqtpyipf nlgalsamsn qqledlinqg rekvveatns
     2221 vtaariqple diistiwken vtltesqvqa lalsrqasqe ldvkrreaiy ndvltkqqml
     2281 igcvqrilmn rrlqqqynqq qqqmsyqqaa mshlmmpkpp nlimnpsnyq qidmrgmyqs
     2341 vsggmqpppl qrapppmrgk nagpsqgksm
//
LOCUS       XP_009560578             452 aa            linear   VRT 09-MAR-2023
DEFINITION  endothelin receptor type B isoform X1 [Cuculus canorus].
ACCESSION   XP_009560578
VERSION     XP_009560578.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009562283.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009560578.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..452
                     /product="endothelin receptor type B isoform X1"
                     /calculated_mol_wt=51001
     Region          107..402
                     /region_name="7tmA_ET-CR"
                     /note="endothelin C receptor, member of the class A family
                     of seven-transmembrane G protein-coupled receptors;
                     cd15977"
                     /db_xref="CDD:320643"
     Region          108..134
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320643"
     Region          141..167
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320643"
     Site            order(163,166..167,179..184,186..187,190,235,237..241,275,
                     278..280,282..284,286..287,341,344..345,347..348,351,
                     369..370,372..374,377,380..381)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:320643"
     Region          179..209
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320643"
     Region          221..241
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320643"
     Region          275..300
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320643"
     Region          321..351
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320643"
     Region          370..395
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320643"
     CDS             1..452
                     /gene="LOC104060484"
                     /coded_by="XM_009562283.2:172..1530"
                     /db_xref="GeneID:104060484"
ORIGIN      
        1 msavrtsaps faiwslmari papttlavfl icffsgarsq tprafqesti pfevlsqeqa
       61 yslvqpslfq dakvlnhses lprstssepp llpvcvkpad irhvfkyint ivsctifivg
      121 iignstllri iyknkcmrng pnvliaslal gdllyilial pinvykllak dwpfgvqvck
      181 lvpfiqkasv gitvlslcal sidryravas wsriqgigip mwkavevlli wvvaivlavp
      241 eaiafdmvel sywerhlwvc mlaseqkssf mmfyrdvkdw wlfgfyfclp lvctgifytl
      301 mscemlskrn gmrialndhm krrrevaktv fclvvifalc wlplhlsril kktiydqtdp
      361 nrcellsfll vmdyfginma slnscinpva lyfvsrkfkn cfqsclccwc qrpalsitpt
      421 dekgsigkwk angqelgldr sssrlsnkys ss
//
LOCUS       XP_053931238             421 aa            linear   VRT 09-MAR-2023
DEFINITION  endothelin receptor type B isoform X2 [Cuculus canorus].
ACCESSION   XP_053931238
VERSION     XP_053931238.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075263.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..421
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..421
                     /product="endothelin receptor type B isoform X2"
                     /calculated_mol_wt=47550
     Region          107..402
                     /region_name="7tmA_ET-CR"
                     /note="endothelin C receptor, member of the class A family
                     of seven-transmembrane G protein-coupled receptors;
                     cd15977"
                     /db_xref="CDD:320643"
     Region          108..134
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320643"
     Region          141..167
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320643"
     Site            order(163,166..167,179..184,186..187,190,235,237..241,275,
                     278..280,282..284,286..287,341,344..345,347..348,351,
                     369..370,372..374,377,380..381)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:320643"
     Region          179..209
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320643"
     Region          221..241
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320643"
     Region          275..300
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320643"
     Region          321..351
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320643"
     Region          370..395
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320643"
     CDS             1..421
                     /gene="LOC104060484"
                     /coded_by="XM_054075263.1:172..1437"
                     /db_xref="GeneID:104060484"
ORIGIN      
        1 msavrtsaps faiwslmari papttlavfl icffsgarsq tprafqesti pfevlsqeqa
       61 yslvqpslfq dakvlnhses lprstssepp llpvcvkpad irhvfkyint ivsctifivg
      121 iignstllri iyknkcmrng pnvliaslal gdllyilial pinvykllak dwpfgvqvck
      181 lvpfiqkasv gitvlslcal sidryravas wsriqgigip mwkavevlli wvvaivlavp
      241 eaiafdmvel sywerhlwvc mlaseqkssf mmfyrdvkdw wlfgfyfclp lvctgifytl
      301 mscemlskrn gmrialndhm krrrevaktv fclvvifalc wlplhlsril kktiydqtdp
      361 nrcellsfll vmdyfginma slnscinpva lyfvsrkfkn cfqvplllas stlevtalws
      421 v
//
LOCUS       XP_053931239             452 aa            linear   VRT 09-MAR-2023
DEFINITION  endothelin receptor type B isoform X1 [Cuculus canorus].
ACCESSION   XP_053931239
VERSION     XP_053931239.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075264.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..452
                     /product="endothelin receptor type B isoform X1"
                     /calculated_mol_wt=51001
     Region          107..402
                     /region_name="7tmA_ET-CR"
                     /note="endothelin C receptor, member of the class A family
                     of seven-transmembrane G protein-coupled receptors;
                     cd15977"
                     /db_xref="CDD:320643"
     Region          108..134
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320643"
     Region          141..167
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320643"
     Site            order(163,166..167,179..184,186..187,190,235,237..241,275,
                     278..280,282..284,286..287,341,344..345,347..348,351,
                     369..370,372..374,377,380..381)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:320643"
     Region          179..209
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320643"
     Region          221..241
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320643"
     Region          275..300
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320643"
     Region          321..351
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320643"
     Region          370..395
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320643"
     CDS             1..452
                     /gene="LOC104060484"
                     /coded_by="XM_054075264.1:198..1556"
                     /db_xref="GeneID:104060484"
ORIGIN      
        1 msavrtsaps faiwslmari papttlavfl icffsgarsq tprafqesti pfevlsqeqa
       61 yslvqpslfq dakvlnhses lprstssepp llpvcvkpad irhvfkyint ivsctifivg
      121 iignstllri iyknkcmrng pnvliaslal gdllyilial pinvykllak dwpfgvqvck
      181 lvpfiqkasv gitvlslcal sidryravas wsriqgigip mwkavevlli wvvaivlavp
      241 eaiafdmvel sywerhlwvc mlaseqkssf mmfyrdvkdw wlfgfyfclp lvctgifytl
      301 mscemlskrn gmrialndhm krrrevaktv fclvvifalc wlplhlsril kktiydqtdp
      361 nrcellsfll vmdyfginma slnscinpva lyfvsrkfkn cfqsclccwc qrpalsitpt
      421 dekgsigkwk angqelgldr sssrlsnkys ss
//
LOCUS       XP_053931240             253 aa            linear   VRT 09-MAR-2023
DEFINITION  vesicle-associated membrane protein 7 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931240
VERSION     XP_053931240.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075265.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..253
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..253
                     /product="vesicle-associated membrane protein 7 isoform
                     X1"
                     /calculated_mol_wt=28033
     Region          37..149
                     /region_name="Longin"
                     /note="longin domain; cd14824"
                     /db_xref="CDD:341428"
     Site            order(37,58,61,80,83,85)
                     /site_type="lipid-binding"
                     /note="lipid binding site [chemical binding]"
                     /db_xref="CDD:341428"
     Site            order(47,50,52,59,63,141,145,148)
                     /site_type="other"
                     /note="Sec22 interface [polypeptide binding]"
                     /db_xref="CDD:341428"
     Site            order(79,82,102,106)
                     /site_type="other"
                     /note="VARP interface [polypeptide binding]"
                     /db_xref="CDD:341428"
     Region          157..221
                     /region_name="R-SNARE_VAMP7"
                     /note="SNARE motif of VAMP7; cd15871"
                     /db_xref="CDD:277224"
     Site            order(157..158,161..162,164..166,168..173,175..177,
                     179..180,182..183,186..187,189..194,196..198,200..201,
                     203..208,210..211)
                     /site_type="other"
                     /note="heterotetramer interface [polypeptide binding]"
                     /db_xref="CDD:277224"
     Site            183
                     /site_type="other"
                     /note="zero layer"
                     /db_xref="CDD:277224"
     CDS             1..253
                     /gene="VAMP7"
                     /coded_by="XM_054075265.1:41..802"
                     /db_xref="GeneID:104060486"
ORIGIN      
        1 mphrispeah hgvpgrggpa tgwccrggrw cavmailfav vargttilak hawcggnfle
       61 vteqilakip sennkltysh gnylfhyicq driiylcitd ddfersraft flneikkrfq
      121 ttygsraqta lpyamnsefs svlaaqlkyh seskgtdqva etqaqidelk gimvrnidlv
      181 aqrgeklell idktenlvds svtfkttsrn laramcmknl kltiviiias ivvlyiivsv
      241 tcgglawpsc vqk
//
LOCUS       XP_009560580             220 aa            linear   VRT 09-MAR-2023
DEFINITION  vesicle-associated membrane protein 7 isoform X2 [Cuculus canorus].
ACCESSION   XP_009560580
VERSION     XP_009560580.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009562285.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..220
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..220
                     /product="vesicle-associated membrane protein 7 isoform
                     X2"
                     /calculated_mol_wt=24554
     Region          4..116
                     /region_name="Longin"
                     /note="longin domain; cd14824"
                     /db_xref="CDD:341428"
     Site            order(4,25,28,47,50,52)
                     /site_type="lipid-binding"
                     /note="lipid binding site [chemical binding]"
                     /db_xref="CDD:341428"
     Site            order(14,17,19,26,30,108,112,115)
                     /site_type="other"
                     /note="Sec22 interface [polypeptide binding]"
                     /db_xref="CDD:341428"
     Site            order(46,49,69,73)
                     /site_type="other"
                     /note="VARP interface [polypeptide binding]"
                     /db_xref="CDD:341428"
     Region          124..188
                     /region_name="R-SNARE_VAMP7"
                     /note="SNARE motif of VAMP7; cd15871"
                     /db_xref="CDD:277224"
     Site            order(124..125,128..129,131..133,135..140,142..144,
                     146..147,149..150,153..154,156..161,163..165,167..168,
                     170..175,177..178)
                     /site_type="other"
                     /note="heterotetramer interface [polypeptide binding]"
                     /db_xref="CDD:277224"
     Site            150
                     /site_type="other"
                     /note="zero layer"
                     /db_xref="CDD:277224"
     CDS             1..220
                     /gene="VAMP7"
                     /coded_by="XM_009562285.2:136..798"
                     /db_xref="GeneID:104060486"
ORIGIN      
        1 mailfavvar gttilakhaw cggnflevte qilakipsen nkltyshgny lfhyicqdri
       61 iylcitdddf ersraftfln eikkrfqtty gsraqtalpy amnsefssvl aaqlkyhses
      121 kgtdqvaetq aqidelkgim vrnidlvaqr geklellidk tenlvdssvt fkttsrnlar
      181 amcmknlklt iviiiasivv lyiivsvtcg glawpscvqk
//
LOCUS       XP_009560579             114 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA-directed RNA polymerases I and III subunit RPAC2 [Cuculus
            canorus].
ACCESSION   XP_009560579
VERSION     XP_009560579.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009562284.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..114
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..114
                     /product="DNA-directed RNA polymerases I and III subunit
                     RPAC2"
                     /calculated_mol_wt=12883
     Region          14..98
                     /region_name="RNAP_I_III_AC19"
                     /note="AC19 subunit of Eukaryotic RNA polymerase (RNAP) I
                     and RNAP III; cd07029"
                     /db_xref="CDD:132907"
     Site            order(28,33..35,37,42,56,84..85,90..92,94..96)
                     /site_type="other"
                     /note="AC19 - AC40 heterodimer interface [polypeptide
                     binding]"
                     /db_xref="CDD:132907"
     Site            order(33,58..59)
                     /site_type="other"
                     /note="AC19 - A135(C128) interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:132907"
     Site            order(40,51,53..55,57..59)
                     /site_type="other"
                     /note="AC19 - A190(C160) interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:132907"
     Site            50
                     /site_type="other"
                     /note="AC19 - RPB8 interaction site [polypeptide binding]"
                     /db_xref="CDD:132907"
     CDS             1..114
                     /gene="LOC104060485"
                     /coded_by="XM_009562284.2:90..434"
                     /db_xref="GeneID:104060485"
ORIGIN      
        1 maeegerkaa letvqadgtd gncvtfvlhd edhtlgnalr ymvmknpdve fcgycithps
       61 eskinfriqt rgtlpavepf rkglndlmsv cqhvldtfqn smqeyraqre eemq
//
LOCUS       XP_009570250             162 aa            linear   VRT 09-MAR-2023
DEFINITION  sorting nexin-12 [Cuculus canorus].
ACCESSION   XP_009570250
VERSION     XP_009570250.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009571955.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..162
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..162
                     /product="sorting nexin-12"
                     /calculated_mol_wt=18800
     Region          27..158
                     /region_name="PX_domain"
                     /note="The Phox Homology domain, a phosphoinositide
                     binding module; cl02563"
                     /db_xref="CDD:470617"
     Site            order(71..73,96..97,119)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:132827"
     CDS             1..162
                     /gene="SNX12"
                     /coded_by="XM_009571955.2:37..525"
                     /db_xref="GeneID:104068998"
ORIGIN      
        1 mseaavadtr rlnakpqdlt daygppsnfl eidifnpqtv gmgrarytsy elrmrtnlpi
       61 fklkescvrr rysdfewlkn elerdskivv pplpgkalkr qlpfrgdegi feesfieerr
      121 qgleqfinki aghplaqner clhmflqeet idrnyvpgkv rq
//
LOCUS       XP_053931241             533 aa            linear   VRT 09-MAR-2023
DEFINITION  forkhead box protein O4 [Cuculus canorus].
ACCESSION   XP_053931241
VERSION     XP_053931241.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075266.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..533
                     /product="forkhead box protein O4"
                     /calculated_mol_wt=56354
     Region          <73..360
                     /region_name="COG5025"
                     /note="Transcription factor of the Forkhead/HNF3 family
                     [Transcription]"
                     /db_xref="CDD:227358"
     Region          73..158
                     /region_name="FH_FOXO4"
                     /note="Forkhead (FH) domain found in Forkhead box protein
                     O4 (FOXO4) and similar proteins; cd20062"
                     /db_xref="CDD:410836"
     Site            order(73..74,76,79..81,99,103,120..121,124,127..128,
                     130..131,134,141,150..151,153)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410836"
     Region          <341..385
                     /region_name="FOXO_KIX_bdg"
                     /note="KIX-binding domain of forkhead box O, CR2;
                     pfam16675"
                     /db_xref="CDD:465228"
     Region          474..513
                     /region_name="FOXO-TAD"
                     /note="Transactivation domain of FOXO protein family;
                     pfam16676"
                     /db_xref="CDD:435506"
     CDS             1..533
                     /gene="FOXO4"
                     /coded_by="XM_054075266.1:149..1750"
                     /db_xref="GeneID:104069036"
ORIGIN      
        1 maeagsgaga pdidpdfepq srprsctwpl prpeaeagga agpgeetagg aaaagpgrae
       61 garaaarkgg srrnawgnqs yaelisqaie sapekrltla qiyewmvrsv pyfkdkgdsn
      121 ssagwknsir hnlslhskfi kvhneatgks swwmlnpegg ksgkaprrra asmdnsskla
      181 kvrgkaskkk pslqsapest adspgsqfpk wpgspssrsn edsdvwntfr prtssnasti
      241 sarlspilte qddlhdeell pslvyssass nvpptvteel elidglnlms psssvlptqq
      301 sassgqiqrd ssfslrspna agqtstfgns lfnpvdislq ssvshfsapq tlealltpss
      361 ppprdvmmtq vdpvlpqtgn rmnsrtllll ggratqskms sgnsrgkpte qqaepvgasv
      421 lpstlpgvts pqnpagitsl kapvsattaq siqlgsplll ssaspaplgl nqdrlptdld
      481 idmymenlec dmdyiinsel mdgegldfnf epilstpsyp stsqasnhtw vps
//
LOCUS       XP_053931242             448 aa            linear   VRT 09-MAR-2023
DEFINITION  sestrin-3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931242
VERSION     XP_053931242.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075267.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..448
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..448
                     /product="sestrin-3 isoform X1"
                     /calculated_mol_wt=51942
     Region          21..446
                     /region_name="PA26"
                     /note="PA26 p53-induced protein (sestrin); pfam04636"
                     /db_xref="CDD:461375"
     CDS             1..448
                     /gene="LOC104069037"
                     /coded_by="XM_054075267.1:137..1483"
                     /db_xref="GeneID:104069037"
ORIGIN      
        1 mivcpqsveh prgsrcqrlp gqvvkmsnsd pecpqflfvk vlasrgrlea vtqqmgyhpq
       61 yldsflktqh ylmhmdgplp fdcrhyiaim aaarhqcryl vnlhvlhflr aggdpqwlrg
      121 ldfippklrn lneinkilah rpwlitkehi ekllkisews wslaelvhav vllahchala
      181 sfvfgcgceq degpggrsll kplspgnqcf ceatasngcs qellrinrkr sldscmelds
      241 lrermqrihm etegreetrl lqqdreedsd gevtgatnla cymqdpdfgy qdfarrdedq
      301 trvfrvqdys wedhgfslvn rlysdighll dekfrmvdgl qssaiakrqg cepsvfkrgi
      361 wnyihcmfgi ryddydyaev nqllerilkv yiktvtcype ktnsemfdrf wkqfkhsekv
      421 hvnllilear mqaellyalq aitqymis
//
LOCUS       XP_053931244             373 aa            linear   VRT 09-MAR-2023
DEFINITION  sestrin-3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931244
VERSION     XP_053931244.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075269.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..373
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..373
                     /product="sestrin-3 isoform X2"
                     /calculated_mol_wt=42896
     Region          21..371
                     /region_name="PA26"
                     /note="PA26 p53-induced protein (sestrin); pfam04636"
                     /db_xref="CDD:461375"
     CDS             1..373
                     /gene="LOC104069037"
                     /coded_by="XM_054075269.1:137..1258"
                     /db_xref="GeneID:104069037"
ORIGIN      
        1 mivcpqsveh prgsrcqrlp gqvvkmsnsd pecpqflfvk vlasrgrlea vtqqmgyhpq
       61 yldsflktqh ylmhmdgplp fdcrhyiaim aaarhqcryl vnlhvlhflr aggdpqwlrg
      121 ldfippklrn lneinkilah rpwlitkehi ekllkisews wslaelvhav vllahchala
      181 sfvfgcgceq degpggrsll kplspgnqcf ceatasngcs qellrinrkr sldscmelds
      241 lrermqrihm etegreetrl lqqdreedsd gevtgatnla cymqdpdfgy qdfarrdedq
      301 trvfrvqdys wedhgfslvn rlysdighll dekfrmvdgl qssaiakrqg cepsvfkrgi
      361 wnyihcmfgi rfm
//
LOCUS       XP_053931245            1792 aa            linear   VRT 09-MAR-2023
DEFINITION  bromodomain and WD repeat-containing protein 3 [Cuculus canorus].
ACCESSION   XP_053931245
VERSION     XP_053931245.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075270.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1792
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1792
                     /product="bromodomain and WD repeat-containing protein 3"
                     /calculated_mol_wt=202210
     Region          <179..497
                     /region_name="WD40"
                     /note="WD40 repeat [General function prediction only];
                     COG2319"
                     /db_xref="CDD:441893"
     Region          184..221
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          227..263
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          268..314
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          322..360
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          366..405
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          427..464
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          469..494
                     /region_name="WD40 repeat"
                     /note="WD40 repeat [structural motif]"
                     /db_xref="CDD:293791"
     Region          1135..1247
                     /region_name="Bromo_WDR9_I_like"
                     /note="Bromodomain; WDR9 repeat I_like subfamily. WDR9 is
                     a human gene located in the Down Syndrome critical
                     region-2 of chromosome 21. It encodes for a nuclear
                     protein containing WD40 repeats and two bromodomains,
                     which may function as a transcriptional...; cd05529"
                     /db_xref="CDD:99958"
     Site            order(1175,1180,1183,1222,1226,1232)
                     /site_type="other"
                     /note="putative acetyllysine binding site [chemical
                     binding]"
                     /db_xref="CDD:99958"
     Region          1310..1423
                     /region_name="Bromodomain"
                     /note="Bromodomains are found in many chromatin-associated
                     proteins and in nuclear histone acetyltransferases. They
                     interact specifically with acetylated lysine; cl02556"
                     /db_xref="CDD:445827"
     Site            order(1335,1340,1343,1382,1386,1393)
                     /site_type="active"
                     /note="acetyllysine binding site [active]"
                     /db_xref="CDD:99928"
     CDS             1..1792
                     /gene="BRWD3"
                     /coded_by="XM_054075270.1:229..5607"
                     /db_xref="GeneID:104054286"
ORIGIN      
        1 maaaaptqle aelyyliarf lqsgpckksa qvlveeleeh qlipqrldwq gkehrrsfed
       61 lvavnahipp dyllricerl gplldkeipq svlgvqtllg vgrqsllraa kdfrhtlwkg
      121 safaalhrgr ppelpvnygk ppnvvhiisa rqltgcgrfs hlfptstyqh mkmhkrilgh
      181 lssvyciafd rsgrriftgs ddclvkiwat ddgrllstlr ghsaeisdma vnyentllaa
      241 gscdkvvrvw clrtcapvav lqghsasits iqfsparkgt tryltstgad gticfwqwha
      301 ntmkfkdrpv kfaersrpgv qiscssfssg gmfiatgstd hmiriyylgs espekmaele
      361 shtdkvvavq fcnngdslrf vsgsrdgtar vwhyqqqdwk svvldmatkm tgnnvasged
      421 kvtklkvtmv awdrydatvi tavnnfllkv wnsstgqllh slsghddevf vleahpfdqr
      481 ivlsaghdgn ifvwdidkgt kirnyfnmie gqghgavfdc kfspdgqhfa ctdshghlll
      541 fgfgcnkyye kipdqmffht dyrplirdan nyvldeqtqq aphlmpppfl vdvdgnphpt
      601 rfqrlvpgre nckdeqlipq lgyvangdge vveqvigqqt ndqdesildg mirelqreqd
      661 lrlisegetp pnppvnrshs vsaalrspal dvssppnvgl rrsgqiegvr qmhhnaprsq
      721 materdlmaw srrvvvnelp pgiskvqeec raakgeieis lytvekkrkp shilqrndyq
      781 tgsgralrrn qrkrqhayqt rstiehsqqg asqnpraree sessseedet agtsdasvdd
      841 pvaawqsess ssdssseysd wtadaginlq ppkrqtrqaa rkifsssdde nmkgtkglep
      901 krrklkqprk kkpsgllsme gepseewlap qwildtiprr spfvpqmgde iiyfrqghea
      961 yvravrkaki ysinmqkqpw nkmelreqef vktvgikyev gpptlcclkl afldpitgkm
     1021 tgesfsikyh dmpdvidflv lhqfyneake rnwqigdrfr siiddawwfg tvesqqpfqa
     1081 eypdssfqcy svhwdnnere rmspwdmepi pegtaypeev gagvpvtpde ltallykpqe
     1141 gewgahsrde ecervirgie qllsldisnp favpvdlsay pmyctvvayp tdlttirrrl
     1201 enrfyrrisa lmwevryieh nartfnepds pivkaakivt dvllrfigdq sctdilevyn
     1261 kvkaedlsst eeeeevaevd vdsdapgtss gkrrvrrrvk rqpmkaspda wkeqckqlln
     1321 liyeredsep frqpvdlfsy pdyrdivdtp mdfstvketl eagnytsple fykdirlifc
     1381 nskaytpnkk sriysmtlrl salfenhmkd iiseyksamq cqkrrrpryr krlrsssssp
     1441 stsrasspkg kqkqmkvqpk pnqntslplt rtsssvsshv sdtaeeplgs atgeemegqp
     1501 sssgsnaqnr sgntidpgks rlirskstpv kqdrspdgpl tngdgreprt gvkrklmsas
     1561 edehleeaee eekkrelkek sglsssesge lgsssssesr sgsdsdsest srtdqdyidg
     1621 dhdyskvvqs kkprrkikrk itggkrswqg rgtgrrgrwg rwgrwsrggr ggrggrgcgr
     1681 grgggrggrr grggrgasrg atrakrarit ddefenlfgg qfgenmfggr fsrppriktr
     1741 negrrtvlyn ddsdndnfvh tedplnlgts rsgrvrkmte karvshlmgw ny
//
LOCUS       XP_053931246             423 aa            linear   VRT 09-MAR-2023
DEFINITION  G-protein coupled receptor 83 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931246
VERSION     XP_053931246.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075271.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..423
                     /product="G-protein coupled receptor 83 isoform X1"
                     /calculated_mol_wt=48599
     Region          71..366
                     /region_name="7tmA_GPR83"
                     /note="G protein-coupled receptor 83, member of the class
                     A family of seven-transmembrane G protein-coupled
                     receptors; cd15389"
                     /db_xref="CDD:320511"
     Region          72..98
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320511"
     Region          105..130
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320511"
     Site            order(127,130..131,143..148,150..151,154,208,210..214,246,
                     249..251,253..255,257..258,315,318..319,321..322,325,
                     333..334,336..338,341,344..345)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:320511"
     Region          143..184
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320511"
     Region          195..216
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320511"
     Region          246..275
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320511"
     Region          295..325
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320511"
     Region          334..359
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320511"
     CDS             1..423
                     /gene="LOC104054339"
                     /coded_by="XM_054075271.1:659..1930"
                     /db_xref="GeneID:104054339"
ORIGIN      
        1 mpgmllqsyr spmvgfleef dhysslaklm siyqvtnrtt fnwtdsrive wekfaelaky
       61 epesqkptvk allivaysvi iimslfgnml vchvvlknkr mhsatslfiv nlavsdimit
      121 llntpftlvr fvnstwifgk amchisrfvq ycslhvstlt ltaialdrhq elkvtvqsvl
      181 qvilhplkqr msltkgalsi sliwlmatcf slphaiyqkl fqynyreatv rslcipdfpe
      241 paelvwkyld lstflllyll plliitityt rlakklwlrn aigdittqqy ithhknkkks
      301 ikmlmlvvvv favcwfplnc yvvlisslgi ktknslyfal hwfamsstcy npfiycwlne
      361 sfrselksll cmcqkvpqvq dnaqppvvms creawmerar crkgpasqti ystvnvqtan
      421 adl
//
LOCUS       XP_053931247             423 aa            linear   VRT 09-MAR-2023
DEFINITION  G-protein coupled receptor 83 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931247
VERSION     XP_053931247.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075272.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..423
                     /product="G-protein coupled receptor 83 isoform X1"
                     /calculated_mol_wt=48599
     Region          71..366
                     /region_name="7tmA_GPR83"
                     /note="G protein-coupled receptor 83, member of the class
                     A family of seven-transmembrane G protein-coupled
                     receptors; cd15389"
                     /db_xref="CDD:320511"
     Region          72..98
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320511"
     Region          105..130
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320511"
     Site            order(127,130..131,143..148,150..151,154,208,210..214,246,
                     249..251,253..255,257..258,315,318..319,321..322,325,
                     333..334,336..338,341,344..345)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:320511"
     Region          143..184
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320511"
     Region          195..216
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320511"
     Region          246..275
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320511"
     Region          295..325
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320511"
     Region          334..359
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320511"
     CDS             1..423
                     /gene="LOC104054339"
                     /coded_by="XM_054075272.1:555..1826"
                     /db_xref="GeneID:104054339"
ORIGIN      
        1 mpgmllqsyr spmvgfleef dhysslaklm siyqvtnrtt fnwtdsrive wekfaelaky
       61 epesqkptvk allivaysvi iimslfgnml vchvvlknkr mhsatslfiv nlavsdimit
      121 llntpftlvr fvnstwifgk amchisrfvq ycslhvstlt ltaialdrhq elkvtvqsvl
      181 qvilhplkqr msltkgalsi sliwlmatcf slphaiyqkl fqynyreatv rslcipdfpe
      241 paelvwkyld lstflllyll plliitityt rlakklwlrn aigdittqqy ithhknkkks
      301 ikmlmlvvvv favcwfplnc yvvlisslgi ktknslyfal hwfamsstcy npfiycwlne
      361 sfrselksll cmcqkvpqvq dnaqppvvms creawmerar crkgpasqti ystvnvqtan
      421 adl
//
LOCUS       XP_053931248             423 aa            linear   VRT 09-MAR-2023
DEFINITION  G-protein coupled receptor 83 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931248
VERSION     XP_053931248.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075273.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..423
                     /product="G-protein coupled receptor 83 isoform X1"
                     /calculated_mol_wt=48599
     Region          71..366
                     /region_name="7tmA_GPR83"
                     /note="G protein-coupled receptor 83, member of the class
                     A family of seven-transmembrane G protein-coupled
                     receptors; cd15389"
                     /db_xref="CDD:320511"
     Region          72..98
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320511"
     Region          105..130
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320511"
     Site            order(127,130..131,143..148,150..151,154,208,210..214,246,
                     249..251,253..255,257..258,315,318..319,321..322,325,
                     333..334,336..338,341,344..345)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:320511"
     Region          143..184
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320511"
     Region          195..216
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320511"
     Region          246..275
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320511"
     Region          295..325
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320511"
     Region          334..359
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320511"
     CDS             1..423
                     /gene="LOC104054339"
                     /coded_by="XM_054075273.1:2885..4156"
                     /db_xref="GeneID:104054339"
ORIGIN      
        1 mpgmllqsyr spmvgfleef dhysslaklm siyqvtnrtt fnwtdsrive wekfaelaky
       61 epesqkptvk allivaysvi iimslfgnml vchvvlknkr mhsatslfiv nlavsdimit
      121 llntpftlvr fvnstwifgk amchisrfvq ycslhvstlt ltaialdrhq elkvtvqsvl
      181 qvilhplkqr msltkgalsi sliwlmatcf slphaiyqkl fqynyreatv rslcipdfpe
      241 paelvwkyld lstflllyll plliitityt rlakklwlrn aigdittqqy ithhknkkks
      301 ikmlmlvvvv favcwfplnc yvvlisslgi ktknslyfal hwfamsstcy npfiycwlne
      361 sfrselksll cmcqkvpqvq dnaqppvvms creawmerar crkgpasqti ystvnvqtan
      421 adl
//
LOCUS       XP_053931249             423 aa            linear   VRT 09-MAR-2023
DEFINITION  G-protein coupled receptor 83 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931249
VERSION     XP_053931249.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075274.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..423
                     /product="G-protein coupled receptor 83 isoform X1"
                     /calculated_mol_wt=48599
     Region          71..366
                     /region_name="7tmA_GPR83"
                     /note="G protein-coupled receptor 83, member of the class
                     A family of seven-transmembrane G protein-coupled
                     receptors; cd15389"
                     /db_xref="CDD:320511"
     Region          72..98
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320511"
     Region          105..130
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320511"
     Site            order(127,130..131,143..148,150..151,154,208,210..214,246,
                     249..251,253..255,257..258,315,318..319,321..322,325,
                     333..334,336..338,341,344..345)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:320511"
     Region          143..184
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320511"
     Region          195..216
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320511"
     Region          246..275
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320511"
     Region          295..325
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320511"
     Region          334..359
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320511"
     CDS             1..423
                     /gene="LOC104054339"
                     /coded_by="XM_054075274.1:2781..4052"
                     /db_xref="GeneID:104054339"
ORIGIN      
        1 mpgmllqsyr spmvgfleef dhysslaklm siyqvtnrtt fnwtdsrive wekfaelaky
       61 epesqkptvk allivaysvi iimslfgnml vchvvlknkr mhsatslfiv nlavsdimit
      121 llntpftlvr fvnstwifgk amchisrfvq ycslhvstlt ltaialdrhq elkvtvqsvl
      181 qvilhplkqr msltkgalsi sliwlmatcf slphaiyqkl fqynyreatv rslcipdfpe
      241 paelvwkyld lstflllyll plliitityt rlakklwlrn aigdittqqy ithhknkkks
      301 ikmlmlvvvv favcwfplnc yvvlisslgi ktknslyfal hwfamsstcy npfiycwlne
      361 sfrselksll cmcqkvpqvq dnaqppvvms creawmerar crkgpasqti ystvnvqtan
      421 adl
//
LOCUS       XP_053931250             412 aa            linear   VRT 09-MAR-2023
DEFINITION  G-protein coupled receptor 83 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931250
VERSION     XP_053931250.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075275.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..412
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..412
                     /product="G-protein coupled receptor 83 isoform X2"
                     /calculated_mol_wt=47373
     Region          71..355
                     /region_name="7tmA_GPR83"
                     /note="G protein-coupled receptor 83, member of the class
                     A family of seven-transmembrane G protein-coupled
                     receptors; cd15389"
                     /db_xref="CDD:320511"
     Region          72..98
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320511"
     Region          105..130
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320511"
     Site            order(127,130..131,143..148,150..151,154,197,199..203,235,
                     238..240,242..244,246..247,304,307..308,310..311,314,
                     322..323,325..327,330,333..334)
                     /site_type="other"
                     /note="putative peptide ligand binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:320511"
     Region          143..173
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320511"
     Region          184..205
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320511"
     Region          235..264
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320511"
     Region          284..314
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320511"
     Region          323..348
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320511"
     CDS             1..412
                     /gene="LOC104054339"
                     /coded_by="XM_054075275.1:659..1897"
                     /db_xref="GeneID:104054339"
ORIGIN      
        1 mpgmllqsyr spmvgfleef dhysslaklm siyqvtnrtt fnwtdsrive wekfaelaky
       61 epesqkptvk allivaysvi iimslfgnml vchvvlknkr mhsatslfiv nlavsdimit
      121 llntpftlvr fvnstwifgk amchisrfvq ycslhvstlt ltaialdrhq vilhplkqrm
      181 sltkgalsis liwlmatcfs lphaiyqklf qynyreatvr slcipdfpep aelvwkyldl
      241 stflllyllp lliititytr lakklwlrna igdittqqyi thhknkkksi kmlmlvvvvf
      301 avcwfplncy vvlisslgik tknslyfalh wfamsstcyn pfiycwlnes frselksllc
      361 mcqkvpqvqd naqppvvmsc reawmerarc rkgpasqtiy stvnvqtana dl
//
LOCUS       XP_053931251             564 aa            linear   VRT 09-MAR-2023
DEFINITION  tumor necrosis factor receptor superfamily member 27 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931251
VERSION     XP_053931251.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075276.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..564
                     /product="tumor necrosis factor receptor superfamily
                     member 27 isoform X1"
                     /calculated_mol_wt=59432
     Region          <3..200
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..564
                     /gene="EDA2R"
                     /coded_by="XM_054075276.1:33..1727"
                     /db_xref="GeneID:104054338"
ORIGIN      
        1 mrgphsagpa aphrqlrsap aaphrtaspr lasprllaap araappaphr pastgtaapg
       61 pswpqwsakr astwmsvgna ppaesaclgk sfprtavmam egmrsvspal pgssrtawdi
      121 maaspafpap sstafrspta qrqtmqsves acqgstarhg saaswtgsas papsrhppps
      181 lsvgrsrinl vkvavptvpp qdtallalts salviivlvl lalsiiyckr fwksqcqrvf
      241 lrtqnfsgqr amfpttaaps rflceeqmsg pcclgvknls pcyrqaegpv evvqfisdge
      301 avglqlpslq lepdlppava asaaskaqls rsllesqpli rasgrdclag vlppadprqg
      361 qpstadalvp lsscasemqh kwphapvect eldlqkfstq tefvgserpe eaasrvaqri
      421 paesgdvgwe garhppstfp nptaesgeqp vddaqsfvtq issmakglpi aelphslvqs
      481 laflldpsln gvknfshlgl elgvapqllg risgfeqlva hftysgdvvt vpllaqalqq
      541 lqrfdallll cdhftlspaq grqc
//
LOCUS       XP_053931253             534 aa            linear   VRT 09-MAR-2023
DEFINITION  tumor necrosis factor receptor superfamily member 27 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053931253
VERSION     XP_053931253.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075278.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..534
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..534
                     /product="tumor necrosis factor receptor superfamily
                     member 27 isoform X2"
                     /calculated_mol_wt=56536
     CDS             1..534
                     /gene="EDA2R"
                     /coded_by="XM_054075278.1:33..1637"
                     /db_xref="GeneID:104054338"
ORIGIN      
        1 mrgphsagpa aphrqlrsap aaphrtaspr lasprllaap araappaphr pastgtaapg
       61 pswpqwsakr astwmsvgna ppaesaclgk sfprtavmam egmrsvspal pgssrtawdi
      121 maaspafpap sstafrspta qrqtmqsves acqgrsrinl vkvavptvpp qdtallalts
      181 salviivlvl lalsiiyckr fwksqcqrvf lrtqnfsgqr amfpttaaps rflceeqmsg
      241 pcclgvknls pcyrqaegpv evvqfisdge avglqlpslq lepdlppava asaaskaqls
      301 rsllesqpli rasgrdclag vlppadprqg qpstadalvp lsscasemqh kwphapvect
      361 eldlqkfstq tefvgserpe eaasrvaqri paesgdvgwe garhppstfp nptaesgeqp
      421 vddaqsfvtq issmakglpi aelphslvqs laflldpsln gvknfshlgl elgvapqllg
      481 risgfeqlva hftysgdvvt vpllaqalqq lqrfdallll cdhftlspaq grqc
//
LOCUS       XP_053931254             498 aa            linear   VRT 09-MAR-2023
DEFINITION  tumor necrosis factor receptor superfamily member 27 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053931254
VERSION     XP_053931254.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075279.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..498
                     /product="tumor necrosis factor receptor superfamily
                     member 27 isoform X3"
                     /calculated_mol_wt=53588
     Region          3..118
                     /region_name="TNFRSF27"
                     /note="Tumor necrosis factor receptor superfamily member
                     27 (TNFRSF27), also known as ectodysplasin A2 receptor
                     (EDA2R) or X-linked ectodermal dysplasia receptor (XEDAR);
                     cd15838"
                     /db_xref="CDD:276934"
     Region          3..41
                     /region_name="CRD1"
                     /note="CRD1 [structural motif]"
                     /db_xref="CDD:276934"
     Region          44..83
                     /region_name="CRD2"
                     /note="CRD2 [structural motif]"
                     /db_xref="CDD:276934"
     Region          86..118
                     /region_name="CRD3"
                     /note="CRD3 [structural motif]"
                     /db_xref="CDD:276934"
     CDS             1..498
                     /gene="EDA2R"
                     /coded_by="XM_054075279.1:116..1612"
                     /db_xref="GeneID:104054338"
ORIGIN      
        1 mvcqeseyld ergkctpcrk clpgqelskd cgdgnggdaq cvpcpprkfk dslghhgckp
       61 clsctlinri qksnctatnn avcgeclpgf yrkarisgql dwecipctkq tpssepqcrs
      121 rinlvkvavp tvppqdtall altssalvii vlvllalsii yckrfwksqc qrvflrtqnf
      181 sgqramfptt aapsrflcee qmsgpcclgv knlspcyrqa egpvevvqfi sdgeavglql
      241 pslqlepdlp pavaasaask aqlsrslles qplirasgrd clagvlppad prqgqpstad
      301 alvplsscas emqhkwphap vecteldlqk fstqtefvgs erpeeaasrv aqripaesgd
      361 vgwegarhpp stfpnptaes geqpvddaqs fvtqissmak glpiaelphs lvqslaflld
      421 pslngvknfs hlglelgvap qllgrisgfe qlvahftysg dvvtvpllaq alqqlqrfda
      481 llllcdhftl spaqgrqc
//
LOCUS       XP_053931255             655 aa            linear   VRT 09-MAR-2023
DEFINITION  kelch-like protein 13 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931255
VERSION     XP_053931255.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075280.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..655
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..655
                     /product="kelch-like protein 13 isoform X1"
                     /calculated_mol_wt=73644
     Region          69..196
                     /region_name="BTB_POZ_KLHL9_13"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in Kelch-like
                     proteins KLHL9 and KLHL13; cd18239"
                     /db_xref="CDD:349548"
     Region          92..635
                     /region_name="PHA03098"
                     /note="kelch-like protein; Provisional"
                     /db_xref="CDD:222983"
     Region          379..427
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          431..475
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          478..523
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          525..574
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          577..624
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..655
                     /gene="KLHL13"
                     /coded_by="XM_054075280.1:139..2106"
                     /db_xref="GeneID:104063605"
ORIGIN      
        1 mplkwktssp aiwkfpvpvl ktsrssplsp ayislveeed phmkvslgss dmgvsahlqs
       61 sktgttrfft snthssvvlq gfdqlrvegl lcdvtlvpgd gdevfpvhra mmasasdyfk
      121 amftggmkeq dlmciklhgv nkiglkkiid fiytaklsln mdnlqdtlea asflqilpvl
      181 dfckvflisg vslencvevg riantynlte vdkyvnnfil knfpallstg efvklpferl
      241 afvlssnslk hctelelfka acrwlryeep rmeyaaklmk nirfplmtpq dlinyvqtvd
      301 fmrtdntcvn llleasnyqm mpymqpvmqs ertairsdst hlvtlggvlr qqlvvskelr
      361 mydekahewk slapmdapry qhgiavignf lyvvggqsny dtkgktavdt vfrfdprynk
      421 wmqvaslnek rtffhlsalk ghlyavggrn aagelatvec ynprmnewsy vakmnephyg
      481 hagtvygglm yisggithdt fqkelmcfdp dtdkwtqkap mttvrglhcm ctvgdklyvi
      541 ggnhfrgtsd yddvlsceyy sptldqwtpi aamlrgqsdv gvavfenkiy vvggyswnnr
      601 cmveivqkyd pekdewhkvf dlpeslggir actltvfppe dntgspsres plsap
//
LOCUS       XP_053931256             653 aa            linear   VRT 09-MAR-2023
DEFINITION  kelch-like protein 13 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931256
VERSION     XP_053931256.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075281.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..653
                     /product="kelch-like protein 13 isoform X2"
                     /calculated_mol_wt=73402
     Region          67..194
                     /region_name="BTB_POZ_KLHL9_13"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in Kelch-like
                     proteins KLHL9 and KLHL13; cd18239"
                     /db_xref="CDD:349548"
     Region          90..633
                     /region_name="PHA03098"
                     /note="kelch-like protein; Provisional"
                     /db_xref="CDD:222983"
     Region          377..425
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          429..473
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          476..521
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          523..572
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          575..622
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..653
                     /gene="KLHL13"
                     /coded_by="XM_054075281.1:351..2312"
                     /db_xref="GeneID:104063605"
ORIGIN      
        1 mmwrdalgvi nlgamdhsvl rgevsavlhh rslveeedph mkvslgssdm gvsahlqssk
       61 tgttrfftsn thssvvlqgf dqlrvegllc dvtlvpgdgd evfpvhramm asasdyfkam
      121 ftggmkeqdl mciklhgvnk iglkkiidfi ytaklslnmd nlqdtleaas flqilpvldf
      181 ckvflisgvs lencvevgri antynltevd kyvnnfilkn fpallstgef vklpferlaf
      241 vlssnslkhc telelfkaac rwlryeeprm eyaaklmkni rfplmtpqdl inyvqtvdfm
      301 rtdntcvnll leasnyqmmp ymqpvmqser tairsdsthl vtlggvlrqq lvvskelrmy
      361 dekahewksl apmdapryqh giavignfly vvggqsnydt kgktavdtvf rfdprynkwm
      421 qvaslnekrt ffhlsalkgh lyavggrnaa gelatvecyn prmnewsyva kmnephygha
      481 gtvygglmyi sggithdtfq kelmcfdpdt dkwtqkapmt tvrglhcmct vgdklyvigg
      541 nhfrgtsdyd dvlsceyysp tldqwtpiaa mlrgqsdvgv avfenkiyvv ggyswnnrcm
      601 veivqkydpe kdewhkvfdl peslggirac tltvfppedn tgspsrespl sap
//
LOCUS       XP_053931257             653 aa            linear   VRT 09-MAR-2023
DEFINITION  kelch-like protein 13 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931257
VERSION     XP_053931257.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075282.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..653
                     /product="kelch-like protein 13 isoform X2"
                     /calculated_mol_wt=73402
     Region          67..194
                     /region_name="BTB_POZ_KLHL9_13"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in Kelch-like
                     proteins KLHL9 and KLHL13; cd18239"
                     /db_xref="CDD:349548"
     Region          90..633
                     /region_name="PHA03098"
                     /note="kelch-like protein; Provisional"
                     /db_xref="CDD:222983"
     Region          377..425
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          429..473
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          476..521
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          523..572
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          575..622
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..653
                     /gene="KLHL13"
                     /coded_by="XM_054075282.1:477..2438"
                     /db_xref="GeneID:104063605"
ORIGIN      
        1 mmwrdalgvi nlgamdhsvl rgevsavlhh rslveeedph mkvslgssdm gvsahlqssk
       61 tgttrfftsn thssvvlqgf dqlrvegllc dvtlvpgdgd evfpvhramm asasdyfkam
      121 ftggmkeqdl mciklhgvnk iglkkiidfi ytaklslnmd nlqdtleaas flqilpvldf
      181 ckvflisgvs lencvevgri antynltevd kyvnnfilkn fpallstgef vklpferlaf
      241 vlssnslkhc telelfkaac rwlryeeprm eyaaklmkni rfplmtpqdl inyvqtvdfm
      301 rtdntcvnll leasnyqmmp ymqpvmqser tairsdsthl vtlggvlrqq lvvskelrmy
      361 dekahewksl apmdapryqh giavignfly vvggqsnydt kgktavdtvf rfdprynkwm
      421 qvaslnekrt ffhlsalkgh lyavggrnaa gelatvecyn prmnewsyva kmnephygha
      481 gtvygglmyi sggithdtfq kelmcfdpdt dkwtqkapmt tvrglhcmct vgdklyvigg
      541 nhfrgtsdyd dvlsceyysp tldqwtpiaa mlrgqsdvgv avfenkiyvv ggyswnnrcm
      601 veivqkydpe kdewhkvfdl peslggirac tltvfppedn tgspsrespl sap
//
LOCUS       XP_053931258             653 aa            linear   VRT 09-MAR-2023
DEFINITION  kelch-like protein 13 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931258
VERSION     XP_053931258.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075283.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..653
                     /product="kelch-like protein 13 isoform X2"
                     /calculated_mol_wt=73402
     Region          67..194
                     /region_name="BTB_POZ_KLHL9_13"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in Kelch-like
                     proteins KLHL9 and KLHL13; cd18239"
                     /db_xref="CDD:349548"
     Region          90..633
                     /region_name="PHA03098"
                     /note="kelch-like protein; Provisional"
                     /db_xref="CDD:222983"
     Region          377..425
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          429..473
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          476..521
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          523..572
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          575..622
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..653
                     /gene="KLHL13"
                     /coded_by="XM_054075283.1:248..2209"
                     /db_xref="GeneID:104063605"
ORIGIN      
        1 mmwrdalgvi nlgamdhsvl rgevsavlhh rslveeedph mkvslgssdm gvsahlqssk
       61 tgttrfftsn thssvvlqgf dqlrvegllc dvtlvpgdgd evfpvhramm asasdyfkam
      121 ftggmkeqdl mciklhgvnk iglkkiidfi ytaklslnmd nlqdtleaas flqilpvldf
      181 ckvflisgvs lencvevgri antynltevd kyvnnfilkn fpallstgef vklpferlaf
      241 vlssnslkhc telelfkaac rwlryeeprm eyaaklmkni rfplmtpqdl inyvqtvdfm
      301 rtdntcvnll leasnyqmmp ymqpvmqser tairsdsthl vtlggvlrqq lvvskelrmy
      361 dekahewksl apmdapryqh giavignfly vvggqsnydt kgktavdtvf rfdprynkwm
      421 qvaslnekrt ffhlsalkgh lyavggrnaa gelatvecyn prmnewsyva kmnephygha
      481 gtvygglmyi sggithdtfq kelmcfdpdt dkwtqkapmt tvrglhcmct vgdklyvigg
      541 nhfrgtsdyd dvlsceyysp tldqwtpiaa mlrgqsdvgv avfenkiyvv ggyswnnrcm
      601 veivqkydpe kdewhkvfdl peslggirac tltvfppedn tgspsrespl sap
//
LOCUS       XP_053931259             639 aa            linear   VRT 09-MAR-2023
DEFINITION  kelch-like protein 13 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931259
VERSION     XP_053931259.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075284.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..639
                     /product="kelch-like protein 13 isoform X3"
                     /calculated_mol_wt=71873
     Region          53..180
                     /region_name="BTB_POZ_KLHL9_13"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in Kelch-like
                     proteins KLHL9 and KLHL13; cd18239"
                     /db_xref="CDD:349548"
     Region          76..619
                     /region_name="PHA03098"
                     /note="kelch-like protein; Provisional"
                     /db_xref="CDD:222983"
     Region          363..411
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          415..459
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          462..507
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          509..558
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          561..608
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..639
                     /gene="KLHL13"
                     /coded_by="XM_054075284.1:507..2426"
                     /db_xref="GeneID:104063605"
ORIGIN      
        1 mdhsvlrgev savlhhrslv eeedphmkvs lgssdmgvsa hlqssktgtt rfftsnthss
       61 vvlqgfdqlr vegllcdvtl vpgdgdevfp vhrammasas dyfkamftgg mkeqdlmcik
      121 lhgvnkiglk kiidfiytak lslnmdnlqd tleaasflqi lpvldfckvf lisgvslenc
      181 vevgrianty nltevdkyvn nfilknfpal lstgefvklp ferlafvlss nslkhctele
      241 lfkaacrwlr yeeprmeyaa klmknirfpl mtpqdlinyv qtvdfmrtdn tcvnllleas
      301 nyqmmpymqp vmqsertair sdsthlvtlg gvlrqqlvvs kelrmydeka hewkslapmd
      361 apryqhgiav ignflyvvgg qsnydtkgkt avdtvfrfdp rynkwmqvas lnekrtffhl
      421 salkghlyav ggrnaagela tvecynprmn ewsyvakmne phyghagtvy gglmyisggi
      481 thdtfqkelm cfdpdtdkwt qkapmttvrg lhcmctvgdk lyviggnhfr gtsdyddvls
      541 ceyysptldq wtpiaamlrg qsdvgvavfe nkiyvvggys wnnrcmveiv qkydpekdew
      601 hkvfdlpesl ggiractltv fppedntgsp sresplsap
//
LOCUS       XP_053931260             629 aa            linear   VRT 09-MAR-2023
DEFINITION  kelch-like protein 13 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931260
VERSION     XP_053931260.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075285.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..629
                     /product="kelch-like protein 13 isoform X4"
                     /calculated_mol_wt=70852
     Region          43..170
                     /region_name="BTB_POZ_KLHL9_13"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in Kelch-like
                     proteins KLHL9 and KLHL13; cd18239"
                     /db_xref="CDD:349548"
     Region          66..609
                     /region_name="PHA03098"
                     /note="kelch-like protein; Provisional"
                     /db_xref="CDD:222983"
     Region          353..401
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          405..449
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          452..497
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          499..548
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          551..598
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..629
                     /gene="KLHL13"
                     /coded_by="XM_054075285.1:351..2240"
                     /db_xref="GeneID:104063605"
ORIGIN      
        1 mmwrdalslv eeedphmkvs lgssdmgvsa hlqssktgtt rfftsnthss vvlqgfdqlr
       61 vegllcdvtl vpgdgdevfp vhrammasas dyfkamftgg mkeqdlmcik lhgvnkiglk
      121 kiidfiytak lslnmdnlqd tleaasflqi lpvldfckvf lisgvslenc vevgrianty
      181 nltevdkyvn nfilknfpal lstgefvklp ferlafvlss nslkhctele lfkaacrwlr
      241 yeeprmeyaa klmknirfpl mtpqdlinyv qtvdfmrtdn tcvnllleas nyqmmpymqp
      301 vmqsertair sdsthlvtlg gvlrqqlvvs kelrmydeka hewkslapmd apryqhgiav
      361 ignflyvvgg qsnydtkgkt avdtvfrfdp rynkwmqvas lnekrtffhl salkghlyav
      421 ggrnaagela tvecynprmn ewsyvakmne phyghagtvy gglmyisggi thdtfqkelm
      481 cfdpdtdkwt qkapmttvrg lhcmctvgdk lyviggnhfr gtsdyddvls ceyysptldq
      541 wtpiaamlrg qsdvgvavfe nkiyvvggys wnnrcmveiv qkydpekdew hkvfdlpesl
      601 ggiractltv fppedntgsp sresplsap
//
LOCUS       XP_053931261             629 aa            linear   VRT 09-MAR-2023
DEFINITION  kelch-like protein 13 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931261
VERSION     XP_053931261.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075286.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..629
                     /product="kelch-like protein 13 isoform X4"
                     /calculated_mol_wt=70852
     Region          43..170
                     /region_name="BTB_POZ_KLHL9_13"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in Kelch-like
                     proteins KLHL9 and KLHL13; cd18239"
                     /db_xref="CDD:349548"
     Region          66..609
                     /region_name="PHA03098"
                     /note="kelch-like protein; Provisional"
                     /db_xref="CDD:222983"
     Region          353..401
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          405..449
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          452..497
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          499..548
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          551..598
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..629
                     /gene="KLHL13"
                     /coded_by="XM_054075286.1:62..1951"
                     /db_xref="GeneID:104063605"
ORIGIN      
        1 mmwrdalslv eeedphmkvs lgssdmgvsa hlqssktgtt rfftsnthss vvlqgfdqlr
       61 vegllcdvtl vpgdgdevfp vhrammasas dyfkamftgg mkeqdlmcik lhgvnkiglk
      121 kiidfiytak lslnmdnlqd tleaasflqi lpvldfckvf lisgvslenc vevgrianty
      181 nltevdkyvn nfilknfpal lstgefvklp ferlafvlss nslkhctele lfkaacrwlr
      241 yeeprmeyaa klmknirfpl mtpqdlinyv qtvdfmrtdn tcvnllleas nyqmmpymqp
      301 vmqsertair sdsthlvtlg gvlrqqlvvs kelrmydeka hewkslapmd apryqhgiav
      361 ignflyvvgg qsnydtkgkt avdtvfrfdp rynkwmqvas lnekrtffhl salkghlyav
      421 ggrnaagela tvecynprmn ewsyvakmne phyghagtvy gglmyisggi thdtfqkelm
      481 cfdpdtdkwt qkapmttvrg lhcmctvgdk lyviggnhfr gtsdyddvls ceyysptldq
      541 wtpiaamlrg qsdvgvavfe nkiyvvggys wnnrcmveiv qkydpekdew hkvfdlpesl
      601 ggiractltv fppedntgsp sresplsap
//
LOCUS       XP_053931262             626 aa            linear   VRT 09-MAR-2023
DEFINITION  kelch-like protein 13 isoform X5 [Cuculus canorus].
ACCESSION   XP_053931262
VERSION     XP_053931262.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075287.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..626
                     /product="kelch-like protein 13 isoform X5"
                     /calculated_mol_wt=70492
     Region          40..167
                     /region_name="BTB_POZ_KLHL9_13"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in Kelch-like
                     proteins KLHL9 and KLHL13; cd18239"
                     /db_xref="CDD:349548"
     Region          63..606
                     /region_name="PHA03098"
                     /note="kelch-like protein; Provisional"
                     /db_xref="CDD:222983"
     Region          350..398
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          402..446
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          449..494
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          496..545
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          548..595
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..626
                     /gene="KLHL13"
                     /coded_by="XM_054075287.1:37..1917"
                     /db_xref="GeneID:104063605"
ORIGIN      
        1 mrtrslveee dphmkvslgs sdmgvsahlq ssktgttrff tsnthssvvl qgfdqlrveg
       61 llcdvtlvpg dgdevfpvhr ammasasdyf kamftggmke qdlmciklhg vnkiglkkii
      121 dfiytaklsl nmdnlqdtle aasflqilpv ldfckvflis gvslencvev griantynlt
      181 evdkyvnnfi lknfpallst gefvklpfer lafvlssnsl khctelelfk aacrwlryee
      241 prmeyaaklm knirfplmtp qdlinyvqtv dfmrtdntcv nllleasnyq mmpymqpvmq
      301 sertairsds thlvtlggvl rqqlvvskel rmydekahew kslapmdapr yqhgiavign
      361 flyvvggqsn ydtkgktavd tvfrfdpryn kwmqvaslne krtffhlsal kghlyavggr
      421 naagelatve cynprmnews yvakmnephy ghagtvyggl myisggithd tfqkelmcfd
      481 pdtdkwtqka pmttvrglhc mctvgdklyv iggnhfrgts dyddvlscey ysptldqwtp
      541 iaamlrgqsd vgvavfenki yvvggyswnn rcmveivqky dpekdewhkv fdlpeslggi
      601 ractltvfpp edntgspsre splsap
//
LOCUS       XP_009564137             649 aa            linear   VRT 09-MAR-2023
DEFINITION  kelch-like protein 13 isoform X6 [Cuculus canorus].
ACCESSION   XP_009564137
VERSION     XP_009564137.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565842.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..649
                     /product="kelch-like protein 13 isoform X6"
                     /calculated_mol_wt=73126
     Region          63..190
                     /region_name="BTB_POZ_KLHL9_13"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in Kelch-like
                     proteins KLHL9 and KLHL13; cd18239"
                     /db_xref="CDD:349548"
     Region          86..629
                     /region_name="PHA03098"
                     /note="kelch-like protein; Provisional"
                     /db_xref="CDD:222983"
     Region          373..421
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          425..469
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          472..517
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          519..568
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          571..618
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..649
                     /gene="KLHL13"
                     /coded_by="XM_009565842.2:337..2286"
                     /db_xref="GeneID:104063605"
ORIGIN      
        1 mlrfishlyc csskeecsed dkcilsrslv eeedphmkvs lgssdmgvsa hlqssktgtt
       61 rfftsnthss vvlqgfdqlr vegllcdvtl vpgdgdevfp vhrammasas dyfkamftgg
      121 mkeqdlmcik lhgvnkiglk kiidfiytak lslnmdnlqd tleaasflqi lpvldfckvf
      181 lisgvslenc vevgrianty nltevdkyvn nfilknfpal lstgefvklp ferlafvlss
      241 nslkhctele lfkaacrwlr yeeprmeyaa klmknirfpl mtpqdlinyv qtvdfmrtdn
      301 tcvnllleas nyqmmpymqp vmqsertair sdsthlvtlg gvlrqqlvvs kelrmydeka
      361 hewkslapmd apryqhgiav ignflyvvgg qsnydtkgkt avdtvfrfdp rynkwmqvas
      421 lnekrtffhl salkghlyav ggrnaagela tvecynprmn ewsyvakmne phyghagtvy
      481 gglmyisggi thdtfqkelm cfdpdtdkwt qkapmttvrg lhcmctvgdk lyviggnhfr
      541 gtsdyddvls ceyysptldq wtpiaamlrg qsdvgvavfe nkiyvvggys wnnrcmveiv
      601 qkydpekdew hkvfdlpesl ggiractltv fppedntgsp sresplsap
//
LOCUS       XP_053931264            1080 aa            linear   VRT 09-MAR-2023
DEFINITION  stAR-related lipid transfer protein 8 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931264
VERSION     XP_053931264.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075289.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1080
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1080
                     /product="stAR-related lipid transfer protein 8 isoform
                     X1"
                     /calculated_mol_wt=120265
     Region          31..90
                     /region_name="SAM_DLC1,2-like"
                     /note="SAM domain of DLC1,2-like subfamily; cd09538"
                     /db_xref="CDD:188937"
     Site            order(41,44,46)
                     /site_type="other"
                     /note="putative lipid binding site [chemical binding]"
                     /db_xref="CDD:188937"
     Region          626..842
                     /region_name="RhoGAP_DLC1"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain of DLC1-like proteins. DLC1 shows in
                     vitro GAP activity towards RhoA and CDC42. Beside its
                     C-terminal GAP domain, DLC1 also contains a SAM (sterile
                     alpha motif) and a START...; cd04375"
                     /db_xref="CDD:239840"
     Site            order(668,705,709,777,780..781,823)
                     /site_type="other"
                     /note="putative GTPase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:239840"
     Site            668
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239840"
     Region          867..1071
                     /region_name="SRPBCC"
                     /note="START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC)
                     ligand-binding domain superfamily; cl14643"
                     /db_xref="CDD:472699"
     Site            order(920,922,924,933..935,937..938,951,962,964,966,968,
                     981,983,985,996,998,1018..1019,1021,1023,1033,1035,1037,
                     1039,1049..1053,1055..1056,1059..1061,1064)
                     /site_type="active"
                     /note="hydrophobic ligand binding site [active]"
                     /db_xref="CDD:176178"
     CDS             1..1080
                     /gene="STARD8"
                     /coded_by="XM_054075289.1:190..3432"
                     /db_xref="GeneID:104054301"
ORIGIN      
        1 mplleffwac fkrakcftll eekkdaeiea kkacewlraa gfpqyaqlye dslfpldiga
       61 vkkdhsfldq dslkslcrrl mtlntcasmk levhfqrkqn edseeedlca isdrwafqrd
      121 skrwsrvgsv dvlsqgsevl sstmrlassr esvltdlstn peavslhssg stggtlgvra
      181 vspgppspip adaviaassh svserplpeq plgggegske klkkrrsrsf lkrieslrrk
      241 dkektspdek vaahssiatt pgwaslkang dlaapkanss krgisasfhg kkhffsvsyr
      301 tnrllasggs kvssdskhsg vyledyetag tassdwtdre cqhrhahqgn clvyiprdhk
      361 pgtfpkslsi eslcplggss lthwksgnap iglvgggrgg ssssvegsss prgfacrrrr
      421 gscsslgsrv svydnvpefg ssedfckedg evtyenlddi lqhmwglqqk velwykaisp
      481 dlageegvee eeesdsggep snlhfeersm sdvgtsasdf dstgnslnea eeiemrerrd
      541 sgvgasltrp crklrwhsfq nshrpslnsa sleinrqssa qlnllqkcsl lrltaimeky
      601 svphkqawtw tvpkfmkrsk vpdyrdkmvf gvppiinvqr tgqplpqsiq qamryirsqc
      661 ldqvgifrks gvksriqalr hmnetspdnv nydgqsaydv adllkqyfrd lpepiftskl
      721 tdtflqiyqf vskeqrlqav qaaiilmpde nrevlqtlly flsdiasaee nqmtagnlav
      781 clapsifhln vskkestspr vmhrrgtmgk pdqkdlnenm aatqglshmi idckklfqvs
      841 hdillqlsss ymaadayphp ladfvcqges kalhsyfeqs vqnllkesse kfkgwlstpg
      901 plntelsckk vgdghplrlw kvsteveapp ttvlhrvlre rhlwdedllq skvvealnkn
      961 tevyhyvmds maphprrdcv vlrhwctdlp rgacllisis vehdklpaeg gvkavvltsq
     1021 ylmepsamgr srvthicrad lrgrspewyn kvfghlcame larirdsfpv lspngpetki
//
LOCUS       XP_053931265            1078 aa            linear   VRT 09-MAR-2023
DEFINITION  stAR-related lipid transfer protein 8 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931265
VERSION     XP_053931265.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075290.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1078
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1078
                     /product="stAR-related lipid transfer protein 8 isoform
                     X2"
                     /calculated_mol_wt=119868
     Region          29..88
                     /region_name="SAM_DLC1,2-like"
                     /note="SAM domain of DLC1,2-like subfamily; cd09538"
                     /db_xref="CDD:188937"
     Site            order(39,42,44)
                     /site_type="other"
                     /note="putative lipid binding site [chemical binding]"
                     /db_xref="CDD:188937"
     Region          624..840
                     /region_name="RhoGAP_DLC1"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain of DLC1-like proteins. DLC1 shows in
                     vitro GAP activity towards RhoA and CDC42. Beside its
                     C-terminal GAP domain, DLC1 also contains a SAM (sterile
                     alpha motif) and a START...; cd04375"
                     /db_xref="CDD:239840"
     Site            order(666,703,707,775,778..779,821)
                     /site_type="other"
                     /note="putative GTPase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:239840"
     Site            666
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239840"
     Region          865..1069
                     /region_name="SRPBCC"
                     /note="START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC)
                     ligand-binding domain superfamily; cl14643"
                     /db_xref="CDD:472699"
     Site            order(918,920,922,931..933,935..936,949,960,962,964,966,
                     979,981,983,994,996,1016..1017,1019,1021,1031,1033,1035,
                     1037,1047..1051,1053..1054,1057..1059,1062)
                     /site_type="active"
                     /note="hydrophobic ligand binding site [active]"
                     /db_xref="CDD:176178"
     CDS             1..1078
                     /gene="STARD8"
                     /coded_by="XM_054075290.1:284..3520"
                     /db_xref="GeneID:104054301"
ORIGIN      
        1 mliffpafnp pfpmnragin sfcheieakk acewlraagf pqyaqlyeds lfpldigavk
       61 kdhsfldqds lkslcrrlmt lntcasmkle vhfqrkqned seeedlcais drwafqrdsk
      121 rwsrvgsvdv lsqgsevlss tmrlassres vltdlstnpe avslhssgst ggtlgvravs
      181 pgppspipad aviaasshsv serplpeqpl gggegskekl kkrrsrsflk rieslrrkdk
      241 ektspdekva ahssiattpg waslkangdl aapkansskr gisasfhgkk hffsvsyrtn
      301 rllasggskv ssdskhsgvy ledyetagta ssdwtdrecq hrhahqgncl vyiprdhkpg
      361 tfpkslsies lcplggsslt hwksgnapig lvgggrggss ssvegssspr gfacrrrrgs
      421 csslgsrvsv ydnvpefgss edfckedgev tyenlddilq hmwglqqkve lwykaispdl
      481 ageegveeee esdsggepsn lhfeersmsd vgtsasdfds tgnslneaee iemrerrdsg
      541 vgasltrpcr klrwhsfqns hrpslnsasl einrqssaql nllqkcsllr ltaimekysv
      601 phkqawtwtv pkfmkrskvp dyrdkmvfgv ppiinvqrtg qplpqsiqqa mryirsqcld
      661 qvgifrksgv ksriqalrhm netspdnvny dgqsaydvad llkqyfrdlp epiftskltd
      721 tflqiyqfvs keqrlqavqa aiilmpdenr evlqtllyfl sdiasaeenq mtagnlavcl
      781 apsifhlnvs kkestsprvm hrrgtmgkpd qkdlnenmaa tqglshmiid ckklfqvshd
      841 illqlsssym aadayphpla dfvcqgeska lhsyfeqsvq nllkessekf kgwlstpgpl
      901 ntelsckkvg dghplrlwkv steveapptt vlhrvlrerh lwdedllqsk vvealnknte
      961 vyhyvmdsma phprrdcvvl rhwctdlprg acllisisve hdklpaeggv kavvltsqyl
     1021 mepsamgrsr vthicradlr grspewynkv fghlcamela rirdsfpvls pngpetki
//
LOCUS       XP_053931266            1066 aa            linear   VRT 09-MAR-2023
DEFINITION  stAR-related lipid transfer protein 8 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931266
VERSION     XP_053931266.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075291.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1066
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1066
                     /product="stAR-related lipid transfer protein 8 isoform
                     X3"
                     /calculated_mol_wt=118567
     Region          17..76
                     /region_name="SAM_DLC1,2-like"
                     /note="SAM domain of DLC1,2-like subfamily; cd09538"
                     /db_xref="CDD:188937"
     Site            order(27,30,32)
                     /site_type="other"
                     /note="putative lipid binding site [chemical binding]"
                     /db_xref="CDD:188937"
     Region          612..828
                     /region_name="RhoGAP_DLC1"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain of DLC1-like proteins. DLC1 shows in
                     vitro GAP activity towards RhoA and CDC42. Beside its
                     C-terminal GAP domain, DLC1 also contains a SAM (sterile
                     alpha motif) and a START...; cd04375"
                     /db_xref="CDD:239840"
     Site            order(654,691,695,763,766..767,809)
                     /site_type="other"
                     /note="putative GTPase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:239840"
     Site            654
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239840"
     Region          853..1057
                     /region_name="SRPBCC"
                     /note="START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC)
                     ligand-binding domain superfamily; cl14643"
                     /db_xref="CDD:472699"
     Site            order(906,908,910,919..921,923..924,937,948,950,952,954,
                     967,969,971,982,984,1004..1005,1007,1009,1019,1021,1023,
                     1025,1035..1039,1041..1042,1045..1047,1050)
                     /site_type="active"
                     /note="hydrophobic ligand binding site [active]"
                     /db_xref="CDD:176178"
     CDS             1..1066
                     /gene="STARD8"
                     /coded_by="XM_054075291.1:300..3500"
                     /db_xref="GeneID:104054301"
ORIGIN      
        1 mlfyqlspsi ireieakkac ewlraagfpq yaqlyedslf pldigavkkd hsfldqdslk
       61 slcrrlmtln tcasmklevh fqrkqnedse eedlcaisdr wafqrdskrw srvgsvdvls
      121 qgsevlsstm rlassresvl tdlstnpeav slhssgstgg tlgvravspg ppspipadav
      181 iaasshsvse rplpeqplgg gegskeklkk rrsrsflkri eslrrkdkek tspdekvaah
      241 ssiattpgwa slkangdlaa pkansskrgi sasfhgkkhf fsvsyrtnrl lasggskvss
      301 dskhsgvyle dyetagtass dwtdrecqhr hahqgnclvy iprdhkpgtf pkslsieslc
      361 plggsslthw ksgnapiglv gggrggssss vegsssprgf acrrrrgscs slgsrvsvyd
      421 nvpefgssed fckedgevty enlddilqhm wglqqkvelw ykaispdlag eegveeeees
      481 dsggepsnlh feersmsdvg tsasdfdstg nslneaeeie mrerrdsgvg asltrpcrkl
      541 rwhsfqnshr pslnsaslei nrqssaqlnl lqkcsllrlt aimekysvph kqawtwtvpk
      601 fmkrskvpdy rdkmvfgvpp iinvqrtgqp lpqsiqqamr yirsqcldqv gifrksgvks
      661 riqalrhmne tspdnvnydg qsaydvadll kqyfrdlpep iftskltdtf lqiyqfvske
      721 qrlqavqaai ilmpdenrev lqtllyflsd iasaeenqmt agnlavclap sifhlnvskk
      781 estsprvmhr rgtmgkpdqk dlnenmaatq glshmiidck klfqvshdil lqlsssymaa
      841 dayphpladf vcqgeskalh syfeqsvqnl lkessekfkg wlstpgplnt elsckkvgdg
      901 hplrlwkvst eveappttvl hrvlrerhlw dedllqskvv ealnkntevy hyvmdsmaph
      961 prrdcvvlrh wctdlprgac llisisvehd klpaeggvka vvltsqylme psamgrsrvt
     1021 hicradlrgr spewynkvfg hlcamelari rdsfpvlspn gpetki
//
LOCUS       XP_053931267            1000 aa            linear   VRT 09-MAR-2023
DEFINITION  stAR-related lipid transfer protein 8 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931267
VERSION     XP_053931267.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075292.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1000
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1000
                     /product="stAR-related lipid transfer protein 8 isoform
                     X4"
                     /calculated_mol_wt=110920
     Region          546..762
                     /region_name="RhoGAP_DLC1"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain of DLC1-like proteins. DLC1 shows in
                     vitro GAP activity towards RhoA and CDC42. Beside its
                     C-terminal GAP domain, DLC1 also contains a SAM (sterile
                     alpha motif) and a START...; cd04375"
                     /db_xref="CDD:239840"
     Site            order(588,625,629,697,700..701,743)
                     /site_type="other"
                     /note="putative GTPase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:239840"
     Site            588
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239840"
     Region          787..991
                     /region_name="SRPBCC"
                     /note="START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC)
                     ligand-binding domain superfamily; cl14643"
                     /db_xref="CDD:472699"
     Site            order(840,842,844,853..855,857..858,871,882,884,886,888,
                     901,903,905,916,918,938..939,941,943,953,955,957,959,
                     969..973,975..976,979..981,984)
                     /site_type="active"
                     /note="hydrophobic ligand binding site [active]"
                     /db_xref="CDD:176178"
     CDS             1..1000
                     /gene="STARD8"
                     /coded_by="XM_054075292.1:311..3313"
                     /db_xref="GeneID:104054301"
ORIGIN      
        1 mtlntcasmk levhfqrkqn edseeedlca isdrwafqrd skrwsrvgsv dvlsqgsevl
       61 sstmrlassr esvltdlstn peavslhssg stggtlgvra vspgppspip adaviaassh
      121 svserplpeq plgggegske klkkrrsrsf lkrieslrrk dkektspdek vaahssiatt
      181 pgwaslkang dlaapkanss krgisasfhg kkhffsvsyr tnrllasggs kvssdskhsg
      241 vyledyetag tassdwtdre cqhrhahqgn clvyiprdhk pgtfpkslsi eslcplggss
      301 lthwksgnap iglvgggrgg ssssvegsss prgfacrrrr gscsslgsrv svydnvpefg
      361 ssedfckedg evtyenlddi lqhmwglqqk velwykaisp dlageegvee eeesdsggep
      421 snlhfeersm sdvgtsasdf dstgnslnea eeiemrerrd sgvgasltrp crklrwhsfq
      481 nshrpslnsa sleinrqssa qlnllqkcsl lrltaimeky svphkqawtw tvpkfmkrsk
      541 vpdyrdkmvf gvppiinvqr tgqplpqsiq qamryirsqc ldqvgifrks gvksriqalr
      601 hmnetspdnv nydgqsaydv adllkqyfrd lpepiftskl tdtflqiyqf vskeqrlqav
      661 qaaiilmpde nrevlqtlly flsdiasaee nqmtagnlav clapsifhln vskkestspr
      721 vmhrrgtmgk pdqkdlnenm aatqglshmi idckklfqvs hdillqlsss ymaadayphp
      781 ladfvcqges kalhsyfeqs vqnllkesse kfkgwlstpg plntelsckk vgdghplrlw
      841 kvsteveapp ttvlhrvlre rhlwdedllq skvvealnkn tevyhyvmds maphprrdcv
      901 vlrhwctdlp rgacllisis vehdklpaeg gvkavvltsq ylmepsamgr srvthicrad
      961 lrgrspewyn kvfghlcame larirdsfpv lspngpetki
//
LOCUS       XP_053931268            1000 aa            linear   VRT 09-MAR-2023
DEFINITION  stAR-related lipid transfer protein 8 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931268
VERSION     XP_053931268.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075293.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1000
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1000
                     /product="stAR-related lipid transfer protein 8 isoform
                     X4"
                     /calculated_mol_wt=110920
     Region          546..762
                     /region_name="RhoGAP_DLC1"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain of DLC1-like proteins. DLC1 shows in
                     vitro GAP activity towards RhoA and CDC42. Beside its
                     C-terminal GAP domain, DLC1 also contains a SAM (sterile
                     alpha motif) and a START...; cd04375"
                     /db_xref="CDD:239840"
     Site            order(588,625,629,697,700..701,743)
                     /site_type="other"
                     /note="putative GTPase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:239840"
     Site            588
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239840"
     Region          787..991
                     /region_name="SRPBCC"
                     /note="START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC)
                     ligand-binding domain superfamily; cl14643"
                     /db_xref="CDD:472699"
     Site            order(840,842,844,853..855,857..858,871,882,884,886,888,
                     901,903,905,916,918,938..939,941,943,953,955,957,959,
                     969..973,975..976,979..981,984)
                     /site_type="active"
                     /note="hydrophobic ligand binding site [active]"
                     /db_xref="CDD:176178"
     CDS             1..1000
                     /gene="STARD8"
                     /coded_by="XM_054075293.1:184..3186"
                     /db_xref="GeneID:104054301"
ORIGIN      
        1 mtlntcasmk levhfqrkqn edseeedlca isdrwafqrd skrwsrvgsv dvlsqgsevl
       61 sstmrlassr esvltdlstn peavslhssg stggtlgvra vspgppspip adaviaassh
      121 svserplpeq plgggegske klkkrrsrsf lkrieslrrk dkektspdek vaahssiatt
      181 pgwaslkang dlaapkanss krgisasfhg kkhffsvsyr tnrllasggs kvssdskhsg
      241 vyledyetag tassdwtdre cqhrhahqgn clvyiprdhk pgtfpkslsi eslcplggss
      301 lthwksgnap iglvgggrgg ssssvegsss prgfacrrrr gscsslgsrv svydnvpefg
      361 ssedfckedg evtyenlddi lqhmwglqqk velwykaisp dlageegvee eeesdsggep
      421 snlhfeersm sdvgtsasdf dstgnslnea eeiemrerrd sgvgasltrp crklrwhsfq
      481 nshrpslnsa sleinrqssa qlnllqkcsl lrltaimeky svphkqawtw tvpkfmkrsk
      541 vpdyrdkmvf gvppiinvqr tgqplpqsiq qamryirsqc ldqvgifrks gvksriqalr
      601 hmnetspdnv nydgqsaydv adllkqyfrd lpepiftskl tdtflqiyqf vskeqrlqav
      661 qaaiilmpde nrevlqtlly flsdiasaee nqmtagnlav clapsifhln vskkestspr
      721 vmhrrgtmgk pdqkdlnenm aatqglshmi idckklfqvs hdillqlsss ymaadayphp
      781 ladfvcqges kalhsyfeqs vqnllkesse kfkgwlstpg plntelsckk vgdghplrlw
      841 kvsteveapp ttvlhrvlre rhlwdedllq skvvealnkn tevyhyvmds maphprrdcv
      901 vlrhwctdlp rgacllisis vehdklpaeg gvkavvltsq ylmepsamgr srvthicrad
      961 lrgrspewyn kvfghlcame larirdsfpv lspngpetki
//
LOCUS       XP_053931269             772 aa            linear   VRT 09-MAR-2023
DEFINITION  relaxin receptor 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931269
VERSION     XP_053931269.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075294.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..772
                     /product="relaxin receptor 2 isoform X1"
                     /calculated_mol_wt=86759
     Region          30..65
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(35,44,55..56)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(48,51,55,61..62)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            58..62
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          100..>123
                     /region_name="LRRNT"
                     /note="Leucine rich repeat N-terminal domain; smart00013"
                     /db_xref="CDD:214470"
     Region          <125..>326
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          127..150
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          151..174
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          175..198
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          199..222
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          223..247
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          248..271
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          272..295
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          296..373
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          354..405
                     /region_name="LRR_8"
                     /note="Leucine rich repeat; pfam13855"
                     /db_xref="CDD:404697"
     Region          374..397
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          398..419
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          459..744
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          461..485
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          494..515
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          539..561
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          583..599
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          631..654
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          679..701
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          712..737
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..772
                     /gene="LOC104054333"
                     /coded_by="XM_054075294.1:1590..3908"
                     /db_xref="GeneID:104054333"
ORIGIN      
        1 mrlllillps lfyaatkppv igsqrdrhvc plgqfpcgnl svclpqalhc ngeddcdnga
       61 deencvddsg wlqvlgdmlv arssseaeee sdacwlglfp ercrcwgssv dcteqdltav
      121 pwvssnvtrm dlkknkirsl ldnqfaryrs lkklflqnnk iqlispkafa glyqlkmlfl
      181 shnriaqlkp qvfedlhhle wlmldnnria qiipstfagl kslyflylln nslvqipnts
      241 lctempklsw lelegnrira vhsavfqecr eftvlilrrn klrwiqegtf srlnrlvely
      301 vcthrcpdpq dlqegavlrp llgtllcplp gashcsasqg arlgalkhcs lhsdlsanrl
      361 dqlpsslfdg lvrlqqlnis ynplkkilpg qfeslpqlrs lslegleipn ihnltfqklt
      421 nlshiyfkkf qycsyaphvr sckpntdgis sfenllanii lrvfvwviac ltclgnlfvi
      481 cmrsfiiten sqhtmaiksl ccadglmgiy lfvigafdlk ysgeynkhaq swmgslqcql
      541 vgslamlsse vsvllltymt lekyfsivfp fshhragkkq tisvlvaiwl lgfslstipl
      601 wckesfgnyy grngvcfplq sdlgerpsar gysatiylgv nlaafitivf aysgmfysih
      661 vtaskteerg vcsrevaiak rfffivftda lcwipifllk llsllqveip gtvtswvvif
      721 ilpinsalnp ilytittasf qekvkgclqt kqlelhdsrk sftlvtlpas sv
//
LOCUS       XP_053931270             772 aa            linear   VRT 09-MAR-2023
DEFINITION  relaxin receptor 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931270
VERSION     XP_053931270.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075295.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..772
                     /product="relaxin receptor 2 isoform X1"
                     /calculated_mol_wt=86759
     Region          30..65
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(35,44,55..56)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(48,51,55,61..62)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            58..62
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          100..>123
                     /region_name="LRRNT"
                     /note="Leucine rich repeat N-terminal domain; smart00013"
                     /db_xref="CDD:214470"
     Region          <125..>326
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          127..150
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          151..174
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          175..198
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          199..222
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          223..247
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          248..271
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          272..295
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          296..373
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          354..405
                     /region_name="LRR_8"
                     /note="Leucine rich repeat; pfam13855"
                     /db_xref="CDD:404697"
     Region          374..397
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          398..419
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          459..744
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          461..485
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          494..515
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          539..561
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          583..599
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          631..654
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          679..701
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          712..737
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..772
                     /gene="LOC104054333"
                     /coded_by="XM_054075295.1:2731..5049"
                     /db_xref="GeneID:104054333"
ORIGIN      
        1 mrlllillps lfyaatkppv igsqrdrhvc plgqfpcgnl svclpqalhc ngeddcdnga
       61 deencvddsg wlqvlgdmlv arssseaeee sdacwlglfp ercrcwgssv dcteqdltav
      121 pwvssnvtrm dlkknkirsl ldnqfaryrs lkklflqnnk iqlispkafa glyqlkmlfl
      181 shnriaqlkp qvfedlhhle wlmldnnria qiipstfagl kslyflylln nslvqipnts
      241 lctempklsw lelegnrira vhsavfqecr eftvlilrrn klrwiqegtf srlnrlvely
      301 vcthrcpdpq dlqegavlrp llgtllcplp gashcsasqg arlgalkhcs lhsdlsanrl
      361 dqlpsslfdg lvrlqqlnis ynplkkilpg qfeslpqlrs lslegleipn ihnltfqklt
      421 nlshiyfkkf qycsyaphvr sckpntdgis sfenllanii lrvfvwviac ltclgnlfvi
      481 cmrsfiiten sqhtmaiksl ccadglmgiy lfvigafdlk ysgeynkhaq swmgslqcql
      541 vgslamlsse vsvllltymt lekyfsivfp fshhragkkq tisvlvaiwl lgfslstipl
      601 wckesfgnyy grngvcfplq sdlgerpsar gysatiylgv nlaafitivf aysgmfysih
      661 vtaskteerg vcsrevaiak rfffivftda lcwipifllk llsllqveip gtvtswvvif
      721 ilpinsalnp ilytittasf qekvkgclqt kqlelhdsrk sftlvtlpas sv
//
LOCUS       XP_053931272             748 aa            linear   VRT 09-MAR-2023
DEFINITION  relaxin receptor 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931272
VERSION     XP_053931272.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075297.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..748
                     /product="relaxin receptor 1 isoform X2"
                     /calculated_mol_wt=83997
     Region          30..65
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(35,44,55..56)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(48,51,55,61..62)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            58..62
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          100..>123
                     /region_name="LRRNT"
                     /note="Leucine rich repeat N-terminal domain; smart00013"
                     /db_xref="CDD:214470"
     Region          127..150
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <131..>390
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          151..174
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          175..198
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          199..223
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          224..247
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          248..271
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          272..326
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          327..349
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          350..373
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          374..395
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          435..720
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          437..461
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          470..491
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          515..537
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          559..575
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          607..630
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          655..677
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          688..713
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..748
                     /gene="LOC104054333"
                     /coded_by="XM_054075297.1:1591..3837"
                     /db_xref="GeneID:104054333"
ORIGIN      
        1 mrlllillps lfyaatkppv igsqrdrhvc plgqfpcgnl svclpqalhc ngeddcdnga
       61 deencvddsg wlqvlgdmlv arssseaeee sdacwlglfp ercrcwgssv dcteqdltav
      121 pwvssnvtrm dlkknkirsl ldnqfaryrs lkklflshnr iaqlkpqvfe dlhhlewlml
      181 dnnriaqiip stfaglksly flyllnnslv qipntslcte mpklswlele gnriravhsa
      241 vfqecreftv lilrrnklrw iqegtfsrln rlvelyvcth rcpdpqdlqe gavlrpllgt
      301 llcplpgash csasqgarlg alkhcslhsd lsanrldqlp sslfdglvrl qqlnisynpl
      361 kkilpgqfes lpqlrslsle gleipnihnl tfqkltnlsh iyfkkfqycs yaphvrsckp
      421 ntdgissfen llaniilrvf vwviacltcl gnlfvicmrs fiitensqht maikslccad
      481 glmgiylfvi gafdlkysge ynkhaqswmg slqcqlvgsl amlssevsvl lltymtleky
      541 fsivfpfshh ragkkqtisv lvaiwllgfs lstiplwcke sfgnyygrng vcfplqsdlg
      601 erpsargysa tiylgvnlaa fitivfaysg mfysihvtas kteergvcsr evaiakrfff
      661 ivftdalcwi pifllkllsl lqveipgtvt swvvifilpi nsalnpilyt ittasfqekv
      721 kgclqtkqle lhdsrksftl vtlpassv
//
LOCUS       XP_053931273             735 aa            linear   VRT 09-MAR-2023
DEFINITION  relaxin receptor 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931273
VERSION     XP_053931273.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075298.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..735
                     /product="relaxin receptor 1 isoform X3"
                     /calculated_mol_wt=82485
     Region          30..65
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(35,44,55..56)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(48,51,55,61..62)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            58..62
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          100..>123
                     /region_name="LRRNT"
                     /note="Leucine rich repeat N-terminal domain; smart00013"
                     /db_xref="CDD:214470"
     Region          122..>414
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          127..150
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          151..174
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          175..198
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          199..222
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          223..247
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          248..271
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          272..295
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          296..373
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          374..397
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          398..419
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          459..711
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          461..485
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          494..515
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          539..561
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          583..599
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          631..654
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          679..701
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..735
                     /gene="LOC104054333"
                     /coded_by="XM_054075298.1:1592..3799"
                     /db_xref="GeneID:104054333"
ORIGIN      
        1 mrlllillps lfyaatkppv igsqrdrhvc plgqfpcgnl svclpqalhc ngeddcdnga
       61 deencvddsg wlqvlgdmlv arssseaeee sdacwlglfp ercrcwgssv dcteqdltav
      121 pwvssnvtrm dlkknkirsl ldnqfaryrs lkklflqnnk iqlispkafa glyqlkmlfl
      181 shnriaqlkp qvfedlhhle wlmldnnria qiipstfagl kslyflylln nslvqipnts
      241 lctempklsw lelegnrira vhsavfqecr eftvlilrrn klrwiqegtf srlnrlvely
      301 vcthrcpdpq dlqegavlrp llgtllcplp gashcsasqg arlgalkhcs lhsdlsanrl
      361 dqlpsslfdg lvrlqqlnis ynplkkilpg qfeslpqlrs lslegleipn ihnltfqklt
      421 nlshiyfkkf qycsyaphvr sckpntdgis sfenllanii lrvfvwviac ltclgnlfvi
      481 cmrsfiiten sqhtmaiksl ccadglmgiy lfvigafdlk ysgeynkhaq swmgslqcql
      541 vgslamlsse vsvllltymt lekyfsivfp fshhragkkq tisvlvaiwl lgfslstipl
      601 wckesfgnyy grngvcfplq sdlgerpsar gysatiylgv nlaafitivf aysgmfysih
      661 vtaskteerg vcsrevaiak rfffivftda lcwipifllk llsllqveip gaaevgalfp
      721 dvwaargdgq csrcp
//
LOCUS       XP_053931274             718 aa            linear   VRT 09-MAR-2023
DEFINITION  relaxin receptor 1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931274
VERSION     XP_053931274.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075299.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..718
                     /product="relaxin receptor 1 isoform X4"
                     /calculated_mol_wt=81097
     Region          30..65
                     /region_name="LDLa"
                     /note="Low Density Lipoprotein Receptor Class A domain, a
                     cysteine-rich repeat that plays a central role in
                     mammalian cholesterol metabolism; the receptor protein
                     binds LDL and transports it into cells by endocytosis; 7
                     successive cysteine-rich repeats of about...; cd00112"
                     /db_xref="CDD:238060"
     Site            order(35,44,55..56)
                     /site_type="active"
                     /note="putative binding surface [active]"
                     /db_xref="CDD:238060"
     Site            order(48,51,55,61..62)
                     /site_type="other"
                     /note="calcium-binding site [ion binding]"
                     /db_xref="CDD:238060"
     Site            58..62
                     /site_type="other"
                     /note="D-X-S-D-E motif"
                     /db_xref="CDD:238060"
     Region          100..>123
                     /region_name="LRRNT"
                     /note="Leucine rich repeat N-terminal domain; smart00013"
                     /db_xref="CDD:214470"
     Region          127..150
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          <131..>360
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          151..174
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          175..198
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          199..222
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          223..247
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          248..271
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          272..295
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          296..319
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          320..343
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          344..365
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          405..690
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          407..431
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          440..461
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          485..507
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          529..545
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          577..600
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          625..647
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          658..683
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..718
                     /gene="LOC104054333"
                     /coded_by="XM_054075299.1:1588..3744"
                     /db_xref="GeneID:104054333"
ORIGIN      
        1 mrlllillps lfyaatkppv igsqrdrhvc plgqfpcgnl svclpqalhc ngeddcdnga
       61 deencvddsg wlqvlgdmlv arssseaeee sdacwlglfp ercrcwgssv dcteqdltav
      121 pwvssnvtrm dlkknkirsl ldnqfaryrs lkklflqnnk iqlispkafa glyqlkmlfl
      181 shnriaqlkp qvfedlhhle wlmldnnria qiipstfagl kslyflylln nslvqipnts
      241 lctempklsw lelegnrira vhsavfqecr eftvlilrrn klrwiqegtf srlnrlveld
      301 lsanrldqlp sslfdglvrl qqlnisynpl kkilpgqfes lpqlrslsle gleipnihnl
      361 tfqkltnlsh iyfkkfqycs yaphvrsckp ntdgissfen llaniilrvf vwviacltcl
      421 gnlfvicmrs fiitensqht maikslccad glmgiylfvi gafdlkysge ynkhaqswmg
      481 slqcqlvgsl amlssevsvl lltymtleky fsivfpfshh ragkkqtisv lvaiwllgfs
      541 lstiplwcke sfgnyygrng vcfplqsdlg erpsargysa tiylgvnlaa fitivfaysg
      601 mfysihvtas kteergvcsr evaiakrfff ivftdalcwi pifllkllsl lqveipgtvt
      661 swvvifilpi nsalnpilyt ittasfqekv kgclqtkqle lhdsrksftl vtlpassv
//
LOCUS       XP_053931275            1193 aa            linear   VRT 09-MAR-2023
DEFINITION  phospholipid-transporting ATPase IG isoform X1 [Cuculus canorus].
ACCESSION   XP_053931275
VERSION     XP_053931275.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075300.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1193
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1193
                     /product="phospholipid-transporting ATPase IG isoform X1"
                     /calculated_mol_wt=136903
     Region          100..1033
                     /region_name="P-type_ATPase_APLT_Dnf-like"
                     /note="Aminophospholipid translocases (APLTs), similar to
                     Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2,
                     -10D, -11B, -11C; cd02073"
                     /db_xref="CDD:319770"
     Site            order(467..469,599,622..624,686,733..735,848,851,854,875,
                     878)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:319770"
     Region          1057..1139
                     /region_name="TMEM175"
                     /note="Endosomal/lysosomal potassium channel TMEM175;
                     cl01421"
                     /db_xref="CDD:470197"
     CDS             1..1193
                     /gene="ATP11C"
                     /coded_by="XM_054075300.1:102..3683"
                     /db_xref="GeneID:104059289"
ORIGIN      
        1 mleisvgasa smeekgywfk fqsfsfprtv hvidpwpqae grvvelipvd gvlpvnqetc
       61 lkmwsmwcag eekrvgtrtv vvghrpvset dayvaqkfcd nrivsskytl wnflpknlfe
      121 qfrrianfyf liiflvqviv dtptspvtsg lplffvitvt aikqgyedwl rhradnevnk
      181 snvfivenak qvqkesekik vgdivevkad etfpcdlifl assssdgtcy vttasldges
      241 nfkthyavrd ttvlctdeai dtltatiece qpqpdlykfv griiiyrsnq epvarslgpe
      301 nlllkgatlk ntkkiygvav ytgmetkmal nyqgksqkrs aveksinafl ivylcillsk
      361 atvcttlkyv wqsnpfndep wynektkker etfkvlrmft dflsfmvlfn fiipvsmyvt
      421 vemqkflgsf fiswdkemyd eeikegalvn tsdlneelgq veyvftdktg tltensmefi
      481 eccidghkyk dcisevdgft qtdgplkygk aeksreelfl ralclchtvq ikeadqvdgl
      541 ighperkyty issspdeial vkgaekygft flglendfmk irnqknetem yqllhvlnfd
      601 pvrrrmsviv rtttgklllf ckgadssifp rvqqeeiqqt kvhvdrnamd gyrtlcvafk
      661 eltqkeydki drqlneakma lqdreekmak vfedteadmh ligatavedr lqeqsaetie
      721 alhtagmkvw vltgdkmeta kstcyacrlf qtstellelt vkvvgenerk edrlhellme
      781 yhkkliqdvp knrgglkrsw tlsqeyglii dgstlsliln psqdssssny kniflqiclk
      841 ctavlccrma plqkaqivrm vkntkgspit lsvgdgandv smileahvgi gikgkegrqa
      901 srnsdyavpk fkhlrkllla hghlyyvria hlvqyffykn lcfilpqfly qffcgfsqqp
      961 lydaayltmy nicftslpil ayslleqhin idtltsdpql ymkvsdnaml qwrpflywtf
     1021 lgafeglvff fgvyflfqns sledngkvfg nwtfgtivft vlvftvtlkl aldtrfwtwm
     1081 nhfviwgsla fyvffsffwg gviwpflkqq rmyfvfahml tslstwlaii llifislfpe
     1141 illivlknik ekshqtgpfd lprlvsykri engyvkteda vtnlaerhpl ril
//
LOCUS       XP_053931276            1185 aa            linear   VRT 09-MAR-2023
DEFINITION  phospholipid-transporting ATPase IG isoform X2 [Cuculus canorus].
ACCESSION   XP_053931276
VERSION     XP_053931276.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075301.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1185
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1185
                     /product="phospholipid-transporting ATPase IG isoform X2"
                     /calculated_mol_wt=135821
     Region          100..1033
                     /region_name="P-type_ATPase_APLT_Dnf-like"
                     /note="Aminophospholipid translocases (APLTs), similar to
                     Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2,
                     -10D, -11B, -11C; cd02073"
                     /db_xref="CDD:319770"
     Site            order(467..469,599,622..624,686,733..735,848,851,854,875,
                     878)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:319770"
     Region          1057..1139
                     /region_name="TMEM175"
                     /note="Endosomal/lysosomal potassium channel TMEM175;
                     cl01421"
                     /db_xref="CDD:470197"
     CDS             1..1185
                     /gene="ATP11C"
                     /coded_by="XM_054075301.1:108..3665"
                     /db_xref="GeneID:104059289"
ORIGIN      
        1 mleisvgasa smeekgywfk fqsfsfprtv hvidpwpqae grvvelipvd gvlpvnqetc
       61 lkmwsmwcag eekrvgtrtv vvghrpvset dayvaqkfcd nrivsskytl wnflpknlfe
      121 qfrrianfyf liiflvqviv dtptspvtsg lplffvitvt aikqgyedwl rhradnevnk
      181 snvfivenak qvqkesekik vgdivevkad etfpcdlifl assssdgtcy vttasldges
      241 nfkthyavrd ttvlctdeai dtltatiece qpqpdlykfv griiiyrsnq epvarslgpe
      301 nlllkgatlk ntkkiygvav ytgmetkmal nyqgksqkrs aveksinafl ivylcillsk
      361 atvcttlkyv wqsnpfndep wynektkker etfkvlrmft dflsfmvlfn fiipvsmyvt
      421 vemqkflgsf fiswdkemyd eeikegalvn tsdlneelgq veyvftdktg tltensmefi
      481 eccidghkyk dcisevdgft qtdgplkygk aeksreelfl ralclchtvq ikeadqvdgl
      541 ighperkyty issspdeial vkgaekygft flglendfmk irnqknetem yqllhvlnfd
      601 pvrrrmsviv rtttgklllf ckgadssifp rvqqeeiqqt kvhvdrnamd gyrtlcvafk
      661 eltqkeydki drqlneakma lqdreekmak vfedteadmh ligatavedr lqeqsaetie
      721 alhtagmkvw vltgdkmeta kstcyacrlf qtstellelt vkvvgenerk edrlhellme
      781 yhkkliqdvp knrgglkrsw tlsqeyglii dgstlsliln psqdssssny kniflqiclk
      841 ctavlccrma plqkaqivrm vkntkgspit lsvgdgandv smileahvgi gikgkegrqa
      901 srnsdyavpk fkhlrkllla hghlyyvria hlvqyffykn lcfilpqfly qffcgfsqqp
      961 lydaayltmy nicftslpil ayslleqhin idtltsdpql ymkvsdnaml qwrpflywtf
     1021 lgafeglvff fgvyflfqns sledngkvfg nwtfgtivft vlvftvtlkl aldtrfwtwm
     1081 nhfviwgsla fyvffsffwg gviwpflkqq rmyfvfahml tslstwlaii llifislfpe
     1141 illivlknik ekshqssrkv pdslsarpsv rplllrtfsd essvl
//
LOCUS       XP_053931277            1184 aa            linear   VRT 09-MAR-2023
DEFINITION  phospholipid-transporting ATPase IG isoform X3 [Cuculus canorus].
ACCESSION   XP_053931277
VERSION     XP_053931277.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075302.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1184
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1184
                     /product="phospholipid-transporting ATPase IG isoform X3"
                     /calculated_mol_wt=135709
     Region          100..1033
                     /region_name="P-type_ATPase_APLT_Dnf-like"
                     /note="Aminophospholipid translocases (APLTs), similar to
                     Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2,
                     -10D, -11B, -11C; cd02073"
                     /db_xref="CDD:319770"
     Site            order(467..469,599,622..624,686,733..735,848,851,854,875,
                     878)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:319770"
     Region          1057..1139
                     /region_name="TMEM175"
                     /note="Endosomal/lysosomal potassium channel TMEM175;
                     cl01421"
                     /db_xref="CDD:470197"
     CDS             1..1184
                     /gene="ATP11C"
                     /coded_by="XM_054075302.1:109..3663"
                     /db_xref="GeneID:104059289"
ORIGIN      
        1 mleisvgasa smeekgywfk fqsfsfprtv hvidpwpqae grvvelipvd gvlpvnqetc
       61 lkmwsmwcag eekrvgtrtv vvghrpvset dayvaqkfcd nrivsskytl wnflpknlfe
      121 qfrrianfyf liiflvqviv dtptspvtsg lplffvitvt aikqgyedwl rhradnevnk
      181 snvfivenak qvqkesekik vgdivevkad etfpcdlifl assssdgtcy vttasldges
      241 nfkthyavrd ttvlctdeai dtltatiece qpqpdlykfv griiiyrsnq epvarslgpe
      301 nlllkgatlk ntkkiygvav ytgmetkmal nyqgksqkrs aveksinafl ivylcillsk
      361 atvcttlkyv wqsnpfndep wynektkker etfkvlrmft dflsfmvlfn fiipvsmyvt
      421 vemqkflgsf fiswdkemyd eeikegalvn tsdlneelgq veyvftdktg tltensmefi
      481 eccidghkyk dcisevdgft qtdgplkygk aeksreelfl ralclchtvq ikeadqvdgl
      541 ighperkyty issspdeial vkgaekygft flglendfmk irnqknetem yqllhvlnfd
      601 pvrrrmsviv rtttgklllf ckgadssifp rvqqeeiqqt kvhvdrnamd gyrtlcvafk
      661 eltqkeydki drqlneakma lqdreekmak vfedteadmh ligatavedr lqeqsaetie
      721 alhtagmkvw vltgdkmeta kstcyacrlf qtstellelt vkvvgenerk edrlhellme
      781 yhkkliqdvp knrgglkrsw tlsqeyglii dgstlsliln psqdssssny kniflqiclk
      841 ctavlccrma plqkaqivrm vkntkgspit lsvgdgandv smileahvgi gikgkegrqa
      901 srnsdyavpk fkhlrkllla hghlyyvria hlvqyffykn lcfilpqfly qffcgfsqqp
      961 lydaayltmy nicftslpil ayslleqhin idtltsdpql ymkvsdnaml qwrpflywtf
     1021 lgafeglvff fgvyflfqns sledngkvfg nwtfgtivft vlvftvtlkl aldtrfwtwm
     1081 nhfviwgsla fyvffsffwg gviwpflkqq rmyfvfahml tslstwlaii llifislfpe
     1141 illivlknik ekshqvskrl pssgtstifm lsqtssnhsf swse
//
LOCUS       XP_053931278            1167 aa            linear   VRT 09-MAR-2023
DEFINITION  phospholipid-transporting ATPase IG isoform X4 [Cuculus canorus].
ACCESSION   XP_053931278
VERSION     XP_053931278.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075303.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1167
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1167
                     /product="phospholipid-transporting ATPase IG isoform X4"
                     /calculated_mol_wt=133920
     Region          74..1007
                     /region_name="P-type_ATPase_APLT_Dnf-like"
                     /note="Aminophospholipid translocases (APLTs), similar to
                     Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2,
                     -10D, -11B, -11C; cd02073"
                     /db_xref="CDD:319770"
     Site            order(441..443,573,596..598,660,707..709,822,825,828,849,
                     852)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:319770"
     Region          1031..1113
                     /region_name="TMEM175"
                     /note="Endosomal/lysosomal potassium channel TMEM175;
                     cl01421"
                     /db_xref="CDD:470197"
     CDS             1..1167
                     /gene="ATP11C"
                     /coded_by="XM_054075303.1:133..3636"
                     /db_xref="GeneID:104059289"
ORIGIN      
        1 mktvhvidpw pqaegrvvel ipvdgvlpvn qetclkmwsm wcageekrvg trtvvvghrp
       61 vsetdayvaq kfcdnrivss kytlwnflpk nlfeqfrria nfyfliiflv qvivdtptsp
      121 vtsglplffv itvtaikqgy edwlrhradn evnksnvfiv enakqvqkes ekikvgdive
      181 vkadetfpcd liflassssd gtcyvttasl dgesnfkthy avrdttvlct deaidtltat
      241 ieceqpqpdl ykfvgriiiy rsnqepvars lgpenlllkg atlkntkkiy gvavytgmet
      301 kmalnyqgks qkrsaveksi naflivylci llskatvctt lkyvwqsnpf ndepwynekt
      361 kkeretfkvl rmftdflsfm vlfnfiipvs myvtvemqkf lgsffiswdk emydeeikeg
      421 alvntsdlne elgqveyvft dktgtltens mefieccidg hkykdcisev dgftqtdgpl
      481 kygkaeksre elflralclc htvqikeadq vdglighper kytyissspd eialvkgaek
      541 ygftflglen dfmkirnqkn etemyqllhv lnfdpvrrrm svivrtttgk lllfckgads
      601 sifprvqqee iqqtkvhvdr namdgyrtlc vafkeltqke ydkidrqlne akmalqdree
      661 kmakvfedte admhligata vedrlqeqsa etiealhtag mkvwvltgdk metakstcya
      721 crlfqtstel leltvkvvge nerkedrlhe llmeyhkkli qdvpknrggl krswtlsqey
      781 gliidgstls lilnpsqdss ssnykniflq iclkctavlc crmaplqkaq ivrmvkntkg
      841 spitlsvgdg andvsmilea hvgigikgke grqasrnsdy avpkfkhlrk lllahghlyy
      901 vriahlvqyf fyknlcfilp qflyqffcgf sqqplydaay ltmynicfts lpilayslle
      961 qhinidtlts dpqlymkvsd namlqwrpfl ywtflgafeg lvfffgvyfl fqnssledng
     1021 kvfgnwtfgt ivftvlvftv tlklaldtrf wtwmnhfviw gslafyvffs ffwggviwpf
     1081 lkqqrmyfvf ahmltslstw laiillifis lfpeillivl knikekshqt gpfdlprlvs
     1141 ykriengyvk tedavtnlae rhplril
//
LOCUS       XP_053931279            1136 aa            linear   VRT 09-MAR-2023
DEFINITION  phospholipid-transporting ATPase IG isoform X5 [Cuculus canorus].
ACCESSION   XP_053931279
VERSION     XP_053931279.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075304.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1136
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1136
                     /product="phospholipid-transporting ATPase IG isoform X5"
                     /calculated_mol_wt=130170
     Region          43..976
                     /region_name="P-type_ATPase_APLT_Dnf-like"
                     /note="Aminophospholipid translocases (APLTs), similar to
                     Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2,
                     -10D, -11B, -11C; cd02073"
                     /db_xref="CDD:319770"
     Site            order(410..412,542,565..567,629,676..678,791,794,797,818,
                     821)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:319770"
     Region          1000..1082
                     /region_name="TMEM175"
                     /note="Endosomal/lysosomal potassium channel TMEM175;
                     cl01421"
                     /db_xref="CDD:470197"
     CDS             1..1136
                     /gene="ATP11C"
                     /coded_by="XM_054075304.1:16..3426"
                     /db_xref="GeneID:104059289"
ORIGIN      
        1 malplalgaq cageekrvgt rtvvvghrpv setdayvaqk fcdnrivssk ytlwnflpkn
       61 lfeqfrrian fyfliiflvq vivdtptspv tsglplffvi tvtaikqgye dwlrhradne
      121 vnksnvfive nakqvqkese kikvgdivev kadetfpcdl iflassssdg tcyvttasld
      181 gesnfkthya vrdttvlctd eaidtltati eceqpqpdly kfvgriiiyr snqepvarsl
      241 gpenlllkga tlkntkkiyg vavytgmetk malnyqgksq krsaveksin aflivylcil
      301 lskatvcttl kyvwqsnpfn depwynektk keretfkvlr mftdflsfmv lfnfiipvsm
      361 yvtvemqkfl gsffiswdke mydeeikega lvntsdlnee lgqveyvftd ktgtltensm
      421 efieccidgh kykdcisevd gftqtdgplk ygkaeksree lflralclch tvqikeadqv
      481 dglighperk ytyissspde ialvkgaeky gftflglend fmkirnqkne temyqllhvl
      541 nfdpvrrrms vivrtttgkl llfckgadss ifprvqqeei qqtkvhvdrn amdgyrtlcv
      601 afkeltqkey dkidrqlnea kmalqdreek makvfedtea dmhligatav edrlqeqsae
      661 tiealhtagm kvwvltgdkm etakstcyac rlfqtstell eltvkvvgen erkedrlhel
      721 lmeyhkkliq dvpknrgglk rswtlsqeyg liidgstlsl ilnpsqdsss snykniflqi
      781 clkctavlcc rmaplqkaqi vrmvkntkgs pitlsvgdga ndvsmileah vgigikgkeg
      841 rqasrnsdya vpkfkhlrkl llahghlyyv riahlvqyff yknlcfilpq flyqffcgfs
      901 qqplydaayl tmynicftsl pilayslleq hinidtltsd pqlymkvsdn amlqwrpfly
      961 wtflgafegl vfffgvyflf qnssledngk vfgnwtfgti vftvlvftvt lklaldtrfw
     1021 twmnhfviwg slafyvffsf fwggviwpfl kqqrmyfvfa hmltslstwl aiillifisl
     1081 fpeillivlk nikekshqtg pfdlprlvsy kriengyvkt edavtnlaer hplril
//
LOCUS       XP_009559236            1135 aa            linear   VRT 09-MAR-2023
DEFINITION  phospholipid-transporting ATPase IG isoform X6 [Cuculus canorus].
ACCESSION   XP_009559236
VERSION     XP_009559236.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560941.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1135
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1135
                     /product="phospholipid-transporting ATPase IG isoform X6"
                     /calculated_mol_wt=130317
     Region          42..975
                     /region_name="P-type_ATPase_APLT_Dnf-like"
                     /note="Aminophospholipid translocases (APLTs), similar to
                     Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2,
                     -10D, -11B, -11C; cd02073"
                     /db_xref="CDD:319770"
     Site            order(409..411,541,564..566,628,675..677,790,793,796,817,
                     820)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:319770"
     Region          999..1081
                     /region_name="TMEM175"
                     /note="Endosomal/lysosomal potassium channel TMEM175;
                     cl01421"
                     /db_xref="CDD:470197"
     CDS             1..1135
                     /gene="ATP11C"
                     /coded_by="XM_009560941.2:116..3523"
                     /db_xref="GeneID:104059289"
ORIGIN      
        1 mlrrslsrlc ageekrvgtr tvvvghrpvs etdayvaqkf cdnrivssky tlwnflpknl
       61 feqfrrianf yfliiflvqv ivdtptspvt sglplffvit vtaikqgyed wlrhradnev
      121 nksnvfiven akqvqkesek ikvgdivevk adetfpcdli flassssdgt cyvttasldg
      181 esnfkthyav rdttvlctde aidtltatie ceqpqpdlyk fvgriiiyrs nqepvarslg
      241 penlllkgat lkntkkiygv avytgmetkm alnyqgksqk rsaveksina flivylcill
      301 skatvcttlk yvwqsnpfnd epwynektkk eretfkvlrm ftdflsfmvl fnfiipvsmy
      361 vtvemqkflg sffiswdkem ydeeikegal vntsdlneel gqveyvftdk tgtltensme
      421 fieccidghk ykdcisevdg ftqtdgplky gkaeksreel flralclcht vqikeadqvd
      481 glighperky tyissspdei alvkgaekyg ftflglendf mkirnqknet emyqllhvln
      541 fdpvrrrmsv ivrtttgkll lfckgadssi fprvqqeeiq qtkvhvdrna mdgyrtlcva
      601 fkeltqkeyd kidrqlneak malqdreekm akvfedtead mhligatave drlqeqsaet
      661 iealhtagmk vwvltgdkme takstcyacr lfqtstelle ltvkvvgene rkedrlhell
      721 meyhkkliqd vpknrgglkr swtlsqeygl iidgstlsli lnpsqdssss nykniflqic
      781 lkctavlccr maplqkaqiv rmvkntkgsp itlsvgdgan dvsmileahv gigikgkegr
      841 qasrnsdyav pkfkhlrkll lahghlyyvr iahlvqyffy knlcfilpqf lyqffcgfsq
      901 qplydaaylt mynicftslp ilayslleqh inidtltsdp qlymkvsdna mlqwrpflyw
      961 tflgafeglv fffgvyflfq nssledngkv fgnwtfgtiv ftvlvftvtl klaldtrfwt
     1021 wmnhfviwgs lafyvffsff wggviwpflk qqrmyfvfah mltslstwla iillifislf
     1081 peillivlkn ikekshqtgp fdlprlvsyk riengyvkte davtnlaerh plril
//
LOCUS       XP_053931281            1131 aa            linear   VRT 09-MAR-2023
DEFINITION  phospholipid-transporting ATPase IG isoform X7 [Cuculus canorus].
ACCESSION   XP_053931281
VERSION     XP_053931281.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075306.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1131
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1131
                     /product="phospholipid-transporting ATPase IG isoform X7"
                     /calculated_mol_wt=129926
     Region          38..971
                     /region_name="P-type_ATPase_APLT_Dnf-like"
                     /note="Aminophospholipid translocases (APLTs), similar to
                     Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2,
                     -10D, -11B, -11C; cd02073"
                     /db_xref="CDD:319770"
     Site            order(405..407,537,560..562,624,671..673,786,789,792,813,
                     816)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:319770"
     Region          995..1077
                     /region_name="TMEM175"
                     /note="Endosomal/lysosomal potassium channel TMEM175;
                     cl01421"
                     /db_xref="CDD:470197"
     CDS             1..1131
                     /gene="ATP11C"
                     /coded_by="XM_054075306.1:239..3634"
                     /db_xref="GeneID:104059289"
ORIGIN      
        1 mwsmwcagee krvgtrtvvv ghrpvsetda yvaqkfcdnr ivsskytlwn flpknlfeqf
       61 rrianfyfli iflvqvivdt ptspvtsglp lffvitvtai kqgyedwlrh radnevnksn
      121 vfivenakqv qkesekikvg divevkadet fpcdliflas sssdgtcyvt tasldgesnf
      181 kthyavrdtt vlctdeaidt ltatieceqp qpdlykfvgr iiiyrsnqep varslgpenl
      241 llkgatlknt kkiygvavyt gmetkmalny qgksqkrsav eksinafliv ylcillskat
      301 vcttlkyvwq snpfndepwy nektkkeret fkvlrmftdf lsfmvlfnfi ipvsmyvtve
      361 mqkflgsffi swdkemydee ikegalvnts dlneelgqve yvftdktgtl tensmefiec
      421 cidghkykdc isevdgftqt dgplkygkae ksreelflra lclchtvqik eadqvdglig
      481 hperkytyis sspdeialvk gaekygftfl glendfmkir nqknetemyq llhvlnfdpv
      541 rrrmsvivrt ttgklllfck gadssifprv qqeeiqqtkv hvdrnamdgy rtlcvafkel
      601 tqkeydkidr qlneakmalq dreekmakvf edteadmhli gatavedrlq eqsaetieal
      661 htagmkvwvl tgdkmetaks tcyacrlfqt stelleltvk vvgenerked rlhellmeyh
      721 kkliqdvpkn rgglkrswtl sqeygliidg stlslilnps qdssssnykn iflqiclkct
      781 avlccrmapl qkaqivrmvk ntkgspitls vgdgandvsm ileahvgigi kgkegrqasr
      841 nsdyavpkfk hlrklllahg hlyyvriahl vqyffyknlc filpqflyqf fcgfsqqply
      901 daayltmyni cftslpilay slleqhinid tltsdpqlym kvsdnamlqw rpflywtflg
      961 afeglvfffg vyflfqnssl edngkvfgnw tfgtivftvl vftvtlklal dtrfwtwmnh
     1021 fviwgslafy vffsffwggv iwpflkqqrm yfvfahmlts lstwlaiill ifislfpeil
     1081 livlknikek shqtgpfdlp rlvsykrien gyvktedavt nlaerhplri l
//
LOCUS       XP_053931282             686 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931282
VERSION     XP_053931282.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075307.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X1"
                     /calculated_mol_wt=78296
     Region          32..134
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          33..36
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(34,36..41)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          48..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          84..86
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          93..97
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          112..120
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          123..134
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          146..237
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(146..148,150..153,159,164,166,198,236)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          148..153
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          176..181
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          184..186
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          191..195
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          197..202
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          211..220
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          223..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          250..347
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          278..282
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          315..318
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          328..333
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..344
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          401..559
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..686
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075307.1:4687..6747"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkplvllvlv ictvvsmnlk lvskrnsvdg cidwsvdlkt ymalagepvr vkcalfysyi
       61 rtnysmaqst glrlmwyknk gdleepiifs evrmskdeds iwfhsvelqd sgfytcvlrn
      121 stycmkvsms ltvaenesgl cynskiryle ksevtkrkti scpdiedyet agqepdvvwy
      181 keckpkmwrs vviqkgntll iqdvqeedgg nytcelkfeg klirrtvelk vtalltdkpp
      241 kplfpmenqp tvidvqlgnp ltvackaffg fsgesgpmiy wmkgekfiee leghiregev
      301 rllrehlgek eveltlifda veeadlanyt chvenrngrk hasvllrkkd liykielagg
      361 lgaillllil fvtiykcyni elmlfyrqnf ggdeaaddnk eydaylsytk vdpdaldcen
      421 neeeqfalei lpdvlekhyg yklfipdrdl ipsgtyiedl trcveqsrrl iivltpdyvl
      481 rrgwsifeme nrlhnmlvsg eikviliect elkgkvnyhe veslkhtikl lsvvkwkgpk
      541 ssklnskfwk rlvfempgkk kevlsrhqvl dsaeqglfgd lqtvpslavt gtsatlvesq
      601 adltdyhqad avqmrhycrg yeydvsaatl piasisnhht ccnipltlln gqlplnntvk
      661 dpqefhrnnp llplsakels ftsdiw
//
LOCUS       XP_053931283             686 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931283
VERSION     XP_053931283.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075308.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X1"
                     /calculated_mol_wt=78296
     Region          32..134
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          33..36
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(34,36..41)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          48..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          84..86
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          93..97
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          112..120
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          123..134
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          146..237
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(146..148,150..153,159,164,166,198,236)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          148..153
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          176..181
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          184..186
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          191..195
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          197..202
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          211..220
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          223..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          250..347
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          278..282
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          315..318
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          328..333
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..344
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          401..559
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..686
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075308.1:4990..7050"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkplvllvlv ictvvsmnlk lvskrnsvdg cidwsvdlkt ymalagepvr vkcalfysyi
       61 rtnysmaqst glrlmwyknk gdleepiifs evrmskdeds iwfhsvelqd sgfytcvlrn
      121 stycmkvsms ltvaenesgl cynskiryle ksevtkrkti scpdiedyet agqepdvvwy
      181 keckpkmwrs vviqkgntll iqdvqeedgg nytcelkfeg klirrtvelk vtalltdkpp
      241 kplfpmenqp tvidvqlgnp ltvackaffg fsgesgpmiy wmkgekfiee leghiregev
      301 rllrehlgek eveltlifda veeadlanyt chvenrngrk hasvllrkkd liykielagg
      361 lgaillllil fvtiykcyni elmlfyrqnf ggdeaaddnk eydaylsytk vdpdaldcen
      421 neeeqfalei lpdvlekhyg yklfipdrdl ipsgtyiedl trcveqsrrl iivltpdyvl
      481 rrgwsifeme nrlhnmlvsg eikviliect elkgkvnyhe veslkhtikl lsvvkwkgpk
      541 ssklnskfwk rlvfempgkk kevlsrhqvl dsaeqglfgd lqtvpslavt gtsatlvesq
      601 adltdyhqad avqmrhycrg yeydvsaatl piasisnhht ccnipltlln gqlplnntvk
      661 dpqefhrnnp llplsakels ftsdiw
//
LOCUS       XP_053931284             686 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931284
VERSION     XP_053931284.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075309.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X1"
                     /calculated_mol_wt=78296
     Region          32..134
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          33..36
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(34,36..41)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          48..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          84..86
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          93..97
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          112..120
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          123..134
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          146..237
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(146..148,150..153,159,164,166,198,236)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          148..153
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          176..181
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          184..186
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          191..195
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          197..202
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          211..220
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          223..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          250..347
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          278..282
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          315..318
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          328..333
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..344
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          401..559
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..686
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075309.1:4690..6750"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkplvllvlv ictvvsmnlk lvskrnsvdg cidwsvdlkt ymalagepvr vkcalfysyi
       61 rtnysmaqst glrlmwyknk gdleepiifs evrmskdeds iwfhsvelqd sgfytcvlrn
      121 stycmkvsms ltvaenesgl cynskiryle ksevtkrkti scpdiedyet agqepdvvwy
      181 keckpkmwrs vviqkgntll iqdvqeedgg nytcelkfeg klirrtvelk vtalltdkpp
      241 kplfpmenqp tvidvqlgnp ltvackaffg fsgesgpmiy wmkgekfiee leghiregev
      301 rllrehlgek eveltlifda veeadlanyt chvenrngrk hasvllrkkd liykielagg
      361 lgaillllil fvtiykcyni elmlfyrqnf ggdeaaddnk eydaylsytk vdpdaldcen
      421 neeeqfalei lpdvlekhyg yklfipdrdl ipsgtyiedl trcveqsrrl iivltpdyvl
      481 rrgwsifeme nrlhnmlvsg eikviliect elkgkvnyhe veslkhtikl lsvvkwkgpk
      541 ssklnskfwk rlvfempgkk kevlsrhqvl dsaeqglfgd lqtvpslavt gtsatlvesq
      601 adltdyhqad avqmrhycrg yeydvsaatl piasisnhht ccnipltlln gqlplnntvk
      661 dpqefhrnnp llplsakels ftsdiw
//
LOCUS       XP_053931285             686 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931285
VERSION     XP_053931285.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075310.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X1"
                     /calculated_mol_wt=78296
     Region          32..134
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          33..36
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(34,36..41)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          48..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          84..86
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          93..97
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          112..120
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          123..134
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          146..237
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(146..148,150..153,159,164,166,198,236)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          148..153
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          176..181
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          184..186
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          191..195
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          197..202
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          211..220
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          223..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          250..347
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          278..282
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          315..318
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          328..333
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..344
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          401..559
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..686
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075310.1:4553..6613"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkplvllvlv ictvvsmnlk lvskrnsvdg cidwsvdlkt ymalagepvr vkcalfysyi
       61 rtnysmaqst glrlmwyknk gdleepiifs evrmskdeds iwfhsvelqd sgfytcvlrn
      121 stycmkvsms ltvaenesgl cynskiryle ksevtkrkti scpdiedyet agqepdvvwy
      181 keckpkmwrs vviqkgntll iqdvqeedgg nytcelkfeg klirrtvelk vtalltdkpp
      241 kplfpmenqp tvidvqlgnp ltvackaffg fsgesgpmiy wmkgekfiee leghiregev
      301 rllrehlgek eveltlifda veeadlanyt chvenrngrk hasvllrkkd liykielagg
      361 lgaillllil fvtiykcyni elmlfyrqnf ggdeaaddnk eydaylsytk vdpdaldcen
      421 neeeqfalei lpdvlekhyg yklfipdrdl ipsgtyiedl trcveqsrrl iivltpdyvl
      481 rrgwsifeme nrlhnmlvsg eikviliect elkgkvnyhe veslkhtikl lsvvkwkgpk
      541 ssklnskfwk rlvfempgkk kevlsrhqvl dsaeqglfgd lqtvpslavt gtsatlvesq
      601 adltdyhqad avqmrhycrg yeydvsaatl piasisnhht ccnipltlln gqlplnntvk
      661 dpqefhrnnp llplsakels ftsdiw
//
LOCUS       XP_053931286             686 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931286
VERSION     XP_053931286.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075311.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X1"
                     /calculated_mol_wt=78296
     Region          32..134
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          33..36
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(34,36..41)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          48..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          84..86
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          93..97
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          112..120
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          123..134
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          146..237
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(146..148,150..153,159,164,166,198,236)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          148..153
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          176..181
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          184..186
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          191..195
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          197..202
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          211..220
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          223..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          250..347
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          278..282
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          315..318
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          328..333
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..344
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          401..559
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..686
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075311.1:4626..6686"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkplvllvlv ictvvsmnlk lvskrnsvdg cidwsvdlkt ymalagepvr vkcalfysyi
       61 rtnysmaqst glrlmwyknk gdleepiifs evrmskdeds iwfhsvelqd sgfytcvlrn
      121 stycmkvsms ltvaenesgl cynskiryle ksevtkrkti scpdiedyet agqepdvvwy
      181 keckpkmwrs vviqkgntll iqdvqeedgg nytcelkfeg klirrtvelk vtalltdkpp
      241 kplfpmenqp tvidvqlgnp ltvackaffg fsgesgpmiy wmkgekfiee leghiregev
      301 rllrehlgek eveltlifda veeadlanyt chvenrngrk hasvllrkkd liykielagg
      361 lgaillllil fvtiykcyni elmlfyrqnf ggdeaaddnk eydaylsytk vdpdaldcen
      421 neeeqfalei lpdvlekhyg yklfipdrdl ipsgtyiedl trcveqsrrl iivltpdyvl
      481 rrgwsifeme nrlhnmlvsg eikviliect elkgkvnyhe veslkhtikl lsvvkwkgpk
      541 ssklnskfwk rlvfempgkk kevlsrhqvl dsaeqglfgd lqtvpslavt gtsatlvesq
      601 adltdyhqad avqmrhycrg yeydvsaatl piasisnhht ccnipltlln gqlplnntvk
      661 dpqefhrnnp llplsakels ftsdiw
//
LOCUS       XP_053931287             686 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931287
VERSION     XP_053931287.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075312.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X1"
                     /calculated_mol_wt=78296
     Region          32..134
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          33..36
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(34,36..41)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          48..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          84..86
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          93..97
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          112..120
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          123..134
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          146..237
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(146..148,150..153,159,164,166,198,236)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          148..153
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          176..181
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          184..186
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          191..195
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          197..202
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          211..220
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          223..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          250..347
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          278..282
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          315..318
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          328..333
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..344
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          401..559
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..686
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075312.1:4763..6823"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkplvllvlv ictvvsmnlk lvskrnsvdg cidwsvdlkt ymalagepvr vkcalfysyi
       61 rtnysmaqst glrlmwyknk gdleepiifs evrmskdeds iwfhsvelqd sgfytcvlrn
      121 stycmkvsms ltvaenesgl cynskiryle ksevtkrkti scpdiedyet agqepdvvwy
      181 keckpkmwrs vviqkgntll iqdvqeedgg nytcelkfeg klirrtvelk vtalltdkpp
      241 kplfpmenqp tvidvqlgnp ltvackaffg fsgesgpmiy wmkgekfiee leghiregev
      301 rllrehlgek eveltlifda veeadlanyt chvenrngrk hasvllrkkd liykielagg
      361 lgaillllil fvtiykcyni elmlfyrqnf ggdeaaddnk eydaylsytk vdpdaldcen
      421 neeeqfalei lpdvlekhyg yklfipdrdl ipsgtyiedl trcveqsrrl iivltpdyvl
      481 rrgwsifeme nrlhnmlvsg eikviliect elkgkvnyhe veslkhtikl lsvvkwkgpk
      541 ssklnskfwk rlvfempgkk kevlsrhqvl dsaeqglfgd lqtvpslavt gtsatlvesq
      601 adltdyhqad avqmrhycrg yeydvsaatl piasisnhht ccnipltlln gqlplnntvk
      661 dpqefhrnnp llplsakels ftsdiw
//
LOCUS       XP_053931288             686 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931288
VERSION     XP_053931288.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075313.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X1"
                     /calculated_mol_wt=78296
     Region          32..134
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          33..36
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(34,36..41)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          48..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          84..86
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          93..97
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          112..120
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          123..134
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          146..237
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(146..148,150..153,159,164,166,198,236)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          148..153
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          176..181
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          184..186
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          191..195
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          197..202
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          211..220
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          223..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          250..347
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          278..282
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          315..318
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          328..333
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..344
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          401..559
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..686
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075313.1:4839..6899"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkplvllvlv ictvvsmnlk lvskrnsvdg cidwsvdlkt ymalagepvr vkcalfysyi
       61 rtnysmaqst glrlmwyknk gdleepiifs evrmskdeds iwfhsvelqd sgfytcvlrn
      121 stycmkvsms ltvaenesgl cynskiryle ksevtkrkti scpdiedyet agqepdvvwy
      181 keckpkmwrs vviqkgntll iqdvqeedgg nytcelkfeg klirrtvelk vtalltdkpp
      241 kplfpmenqp tvidvqlgnp ltvackaffg fsgesgpmiy wmkgekfiee leghiregev
      301 rllrehlgek eveltlifda veeadlanyt chvenrngrk hasvllrkkd liykielagg
      361 lgaillllil fvtiykcyni elmlfyrqnf ggdeaaddnk eydaylsytk vdpdaldcen
      421 neeeqfalei lpdvlekhyg yklfipdrdl ipsgtyiedl trcveqsrrl iivltpdyvl
      481 rrgwsifeme nrlhnmlvsg eikviliect elkgkvnyhe veslkhtikl lsvvkwkgpk
      541 ssklnskfwk rlvfempgkk kevlsrhqvl dsaeqglfgd lqtvpslavt gtsatlvesq
      601 adltdyhqad avqmrhycrg yeydvsaatl piasisnhht ccnipltlln gqlplnntvk
      661 dpqefhrnnp llplsakels ftsdiw
//
LOCUS       XP_053931289             686 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931289
VERSION     XP_053931289.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075314.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X1"
                     /calculated_mol_wt=78296
     Region          32..134
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          33..36
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(34,36..41)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          48..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          84..86
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          93..97
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          112..120
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          123..134
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          146..237
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(146..148,150..153,159,164,166,198,236)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          148..153
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          176..181
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          184..186
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          191..195
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          197..202
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          211..220
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          223..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          250..347
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          278..282
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          315..318
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          328..333
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..344
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          401..559
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..686
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075314.1:4282..6342"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkplvllvlv ictvvsmnlk lvskrnsvdg cidwsvdlkt ymalagepvr vkcalfysyi
       61 rtnysmaqst glrlmwyknk gdleepiifs evrmskdeds iwfhsvelqd sgfytcvlrn
      121 stycmkvsms ltvaenesgl cynskiryle ksevtkrkti scpdiedyet agqepdvvwy
      181 keckpkmwrs vviqkgntll iqdvqeedgg nytcelkfeg klirrtvelk vtalltdkpp
      241 kplfpmenqp tvidvqlgnp ltvackaffg fsgesgpmiy wmkgekfiee leghiregev
      301 rllrehlgek eveltlifda veeadlanyt chvenrngrk hasvllrkkd liykielagg
      361 lgaillllil fvtiykcyni elmlfyrqnf ggdeaaddnk eydaylsytk vdpdaldcen
      421 neeeqfalei lpdvlekhyg yklfipdrdl ipsgtyiedl trcveqsrrl iivltpdyvl
      481 rrgwsifeme nrlhnmlvsg eikviliect elkgkvnyhe veslkhtikl lsvvkwkgpk
      541 ssklnskfwk rlvfempgkk kevlsrhqvl dsaeqglfgd lqtvpslavt gtsatlvesq
      601 adltdyhqad avqmrhycrg yeydvsaatl piasisnhht ccnipltlln gqlplnntvk
      661 dpqefhrnnp llplsakels ftsdiw
//
LOCUS       XP_053931290             686 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931290
VERSION     XP_053931290.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075315.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X1"
                     /calculated_mol_wt=78296
     Region          32..134
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          33..36
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(34,36..41)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          48..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          84..86
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          93..97
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          112..120
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          123..134
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          146..237
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(146..148,150..153,159,164,166,198,236)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          148..153
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          176..181
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          184..186
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          191..195
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          197..202
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          211..220
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          223..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          250..347
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          278..282
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          315..318
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          328..333
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..344
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          401..559
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..686
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075315.1:4416..6476"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkplvllvlv ictvvsmnlk lvskrnsvdg cidwsvdlkt ymalagepvr vkcalfysyi
       61 rtnysmaqst glrlmwyknk gdleepiifs evrmskdeds iwfhsvelqd sgfytcvlrn
      121 stycmkvsms ltvaenesgl cynskiryle ksevtkrkti scpdiedyet agqepdvvwy
      181 keckpkmwrs vviqkgntll iqdvqeedgg nytcelkfeg klirrtvelk vtalltdkpp
      241 kplfpmenqp tvidvqlgnp ltvackaffg fsgesgpmiy wmkgekfiee leghiregev
      301 rllrehlgek eveltlifda veeadlanyt chvenrngrk hasvllrkkd liykielagg
      361 lgaillllil fvtiykcyni elmlfyrqnf ggdeaaddnk eydaylsytk vdpdaldcen
      421 neeeqfalei lpdvlekhyg yklfipdrdl ipsgtyiedl trcveqsrrl iivltpdyvl
      481 rrgwsifeme nrlhnmlvsg eikviliect elkgkvnyhe veslkhtikl lsvvkwkgpk
      541 ssklnskfwk rlvfempgkk kevlsrhqvl dsaeqglfgd lqtvpslavt gtsatlvesq
      601 adltdyhqad avqmrhycrg yeydvsaatl piasisnhht ccnipltlln gqlplnntvk
      661 dpqefhrnnp llplsakels ftsdiw
//
LOCUS       XP_053931292             686 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931292
VERSION     XP_053931292.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075317.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X1"
                     /calculated_mol_wt=78296
     Region          32..134
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          33..36
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(34,36..41)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          48..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          84..86
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          93..97
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          112..120
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          123..134
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          146..237
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(146..148,150..153,159,164,166,198,236)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          148..153
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          176..181
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          184..186
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          191..195
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          197..202
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          211..220
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          223..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          250..347
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          278..282
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          315..318
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          328..333
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..344
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          401..559
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..686
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075317.1:4985..7045"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkplvllvlv ictvvsmnlk lvskrnsvdg cidwsvdlkt ymalagepvr vkcalfysyi
       61 rtnysmaqst glrlmwyknk gdleepiifs evrmskdeds iwfhsvelqd sgfytcvlrn
      121 stycmkvsms ltvaenesgl cynskiryle ksevtkrkti scpdiedyet agqepdvvwy
      181 keckpkmwrs vviqkgntll iqdvqeedgg nytcelkfeg klirrtvelk vtalltdkpp
      241 kplfpmenqp tvidvqlgnp ltvackaffg fsgesgpmiy wmkgekfiee leghiregev
      301 rllrehlgek eveltlifda veeadlanyt chvenrngrk hasvllrkkd liykielagg
      361 lgaillllil fvtiykcyni elmlfyrqnf ggdeaaddnk eydaylsytk vdpdaldcen
      421 neeeqfalei lpdvlekhyg yklfipdrdl ipsgtyiedl trcveqsrrl iivltpdyvl
      481 rrgwsifeme nrlhnmlvsg eikviliect elkgkvnyhe veslkhtikl lsvvkwkgpk
      541 ssklnskfwk rlvfempgkk kevlsrhqvl dsaeqglfgd lqtvpslavt gtsatlvesq
      601 adltdyhqad avqmrhycrg yeydvsaatl piasisnhht ccnipltlln gqlplnntvk
      661 dpqefhrnnp llplsakels ftsdiw
//
LOCUS       XP_053931293             686 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931293
VERSION     XP_053931293.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075318.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X1"
                     /calculated_mol_wt=78296
     Region          32..134
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          33..36
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(34,36..41)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          48..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          84..86
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          93..97
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          112..120
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          123..134
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          146..237
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(146..148,150..153,159,164,166,198,236)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          148..153
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          176..181
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          184..186
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          191..195
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          197..202
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          211..220
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          223..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          250..347
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          278..282
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          315..318
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          328..333
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..344
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          401..559
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..686
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075318.1:4682..6742"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkplvllvlv ictvvsmnlk lvskrnsvdg cidwsvdlkt ymalagepvr vkcalfysyi
       61 rtnysmaqst glrlmwyknk gdleepiifs evrmskdeds iwfhsvelqd sgfytcvlrn
      121 stycmkvsms ltvaenesgl cynskiryle ksevtkrkti scpdiedyet agqepdvvwy
      181 keckpkmwrs vviqkgntll iqdvqeedgg nytcelkfeg klirrtvelk vtalltdkpp
      241 kplfpmenqp tvidvqlgnp ltvackaffg fsgesgpmiy wmkgekfiee leghiregev
      301 rllrehlgek eveltlifda veeadlanyt chvenrngrk hasvllrkkd liykielagg
      361 lgaillllil fvtiykcyni elmlfyrqnf ggdeaaddnk eydaylsytk vdpdaldcen
      421 neeeqfalei lpdvlekhyg yklfipdrdl ipsgtyiedl trcveqsrrl iivltpdyvl
      481 rrgwsifeme nrlhnmlvsg eikviliect elkgkvnyhe veslkhtikl lsvvkwkgpk
      541 ssklnskfwk rlvfempgkk kevlsrhqvl dsaeqglfgd lqtvpslavt gtsatlvesq
      601 adltdyhqad avqmrhycrg yeydvsaatl piasisnhht ccnipltlln gqlplnntvk
      661 dpqefhrnnp llplsakels ftsdiw
//
LOCUS       XP_053931294             686 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931294
VERSION     XP_053931294.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075319.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X1"
                     /calculated_mol_wt=78296
     Region          32..134
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          33..36
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(34,36..41)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          48..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          84..86
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          93..97
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          112..120
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          123..134
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          146..237
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(146..148,150..153,159,164,166,198,236)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          148..153
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          176..181
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          184..186
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          191..195
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          197..202
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          211..220
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          223..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          250..347
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          278..282
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          315..318
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          328..333
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..344
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          401..559
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..686
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075319.1:4282..6342"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkplvllvlv ictvvsmnlk lvskrnsvdg cidwsvdlkt ymalagepvr vkcalfysyi
       61 rtnysmaqst glrlmwyknk gdleepiifs evrmskdeds iwfhsvelqd sgfytcvlrn
      121 stycmkvsms ltvaenesgl cynskiryle ksevtkrkti scpdiedyet agqepdvvwy
      181 keckpkmwrs vviqkgntll iqdvqeedgg nytcelkfeg klirrtvelk vtalltdkpp
      241 kplfpmenqp tvidvqlgnp ltvackaffg fsgesgpmiy wmkgekfiee leghiregev
      301 rllrehlgek eveltlifda veeadlanyt chvenrngrk hasvllrkkd liykielagg
      361 lgaillllil fvtiykcyni elmlfyrqnf ggdeaaddnk eydaylsytk vdpdaldcen
      421 neeeqfalei lpdvlekhyg yklfipdrdl ipsgtyiedl trcveqsrrl iivltpdyvl
      481 rrgwsifeme nrlhnmlvsg eikviliect elkgkvnyhe veslkhtikl lsvvkwkgpk
      541 ssklnskfwk rlvfempgkk kevlsrhqvl dsaeqglfgd lqtvpslavt gtsatlvesq
      601 adltdyhqad avqmrhycrg yeydvsaatl piasisnhht ccnipltlln gqlplnntvk
      661 dpqefhrnnp llplsakels ftsdiw
//
LOCUS       XP_053931295             686 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931295
VERSION     XP_053931295.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075320.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X1"
                     /calculated_mol_wt=78296
     Region          32..134
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          33..36
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(34,36..41)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          48..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          84..86
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          93..97
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          112..120
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          123..134
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          146..237
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(146..148,150..153,159,164,166,198,236)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          148..153
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          176..181
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          184..186
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          191..195
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          197..202
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          211..220
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          223..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          250..347
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          278..282
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          315..318
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          328..333
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..344
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          401..559
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..686
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075320.1:4763..6823"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkplvllvlv ictvvsmnlk lvskrnsvdg cidwsvdlkt ymalagepvr vkcalfysyi
       61 rtnysmaqst glrlmwyknk gdleepiifs evrmskdeds iwfhsvelqd sgfytcvlrn
      121 stycmkvsms ltvaenesgl cynskiryle ksevtkrkti scpdiedyet agqepdvvwy
      181 keckpkmwrs vviqkgntll iqdvqeedgg nytcelkfeg klirrtvelk vtalltdkpp
      241 kplfpmenqp tvidvqlgnp ltvackaffg fsgesgpmiy wmkgekfiee leghiregev
      301 rllrehlgek eveltlifda veeadlanyt chvenrngrk hasvllrkkd liykielagg
      361 lgaillllil fvtiykcyni elmlfyrqnf ggdeaaddnk eydaylsytk vdpdaldcen
      421 neeeqfalei lpdvlekhyg yklfipdrdl ipsgtyiedl trcveqsrrl iivltpdyvl
      481 rrgwsifeme nrlhnmlvsg eikviliect elkgkvnyhe veslkhtikl lsvvkwkgpk
      541 ssklnskfwk rlvfempgkk kevlsrhqvl dsaeqglfgd lqtvpslavt gtsatlvesq
      601 adltdyhqad avqmrhycrg yeydvsaatl piasisnhht ccnipltlln gqlplnntvk
      661 dpqefhrnnp llplsakels ftsdiw
//
LOCUS       XP_053931296             686 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931296
VERSION     XP_053931296.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075321.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X1"
                     /calculated_mol_wt=78296
     Region          32..134
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          33..36
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(34,36..41)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          48..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          84..86
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          93..97
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          112..120
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          123..134
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          146..237
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(146..148,150..153,159,164,166,198,236)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          148..153
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          176..181
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          184..186
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          191..195
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          197..202
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          211..220
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          223..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          250..347
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          278..282
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          315..318
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          328..333
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..344
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          401..559
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..686
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075321.1:4427..6487"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkplvllvlv ictvvsmnlk lvskrnsvdg cidwsvdlkt ymalagepvr vkcalfysyi
       61 rtnysmaqst glrlmwyknk gdleepiifs evrmskdeds iwfhsvelqd sgfytcvlrn
      121 stycmkvsms ltvaenesgl cynskiryle ksevtkrkti scpdiedyet agqepdvvwy
      181 keckpkmwrs vviqkgntll iqdvqeedgg nytcelkfeg klirrtvelk vtalltdkpp
      241 kplfpmenqp tvidvqlgnp ltvackaffg fsgesgpmiy wmkgekfiee leghiregev
      301 rllrehlgek eveltlifda veeadlanyt chvenrngrk hasvllrkkd liykielagg
      361 lgaillllil fvtiykcyni elmlfyrqnf ggdeaaddnk eydaylsytk vdpdaldcen
      421 neeeqfalei lpdvlekhyg yklfipdrdl ipsgtyiedl trcveqsrrl iivltpdyvl
      481 rrgwsifeme nrlhnmlvsg eikviliect elkgkvnyhe veslkhtikl lsvvkwkgpk
      541 ssklnskfwk rlvfempgkk kevlsrhqvl dsaeqglfgd lqtvpslavt gtsatlvesq
      601 adltdyhqad avqmrhycrg yeydvsaatl piasisnhht ccnipltlln gqlplnntvk
      661 dpqefhrnnp llplsakels ftsdiw
//
LOCUS       XP_053931297             686 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931297
VERSION     XP_053931297.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075322.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X1"
                     /calculated_mol_wt=78296
     Region          32..134
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          33..36
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(34,36..41)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          48..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          84..86
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          93..97
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          112..120
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          123..134
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          146..237
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(146..148,150..153,159,164,166,198,236)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          148..153
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          176..181
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          184..186
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          191..195
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          197..202
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          211..220
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          223..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          250..347
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          278..282
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          315..318
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          328..333
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..344
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          401..559
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..686
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075322.1:2886..4946"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkplvllvlv ictvvsmnlk lvskrnsvdg cidwsvdlkt ymalagepvr vkcalfysyi
       61 rtnysmaqst glrlmwyknk gdleepiifs evrmskdeds iwfhsvelqd sgfytcvlrn
      121 stycmkvsms ltvaenesgl cynskiryle ksevtkrkti scpdiedyet agqepdvvwy
      181 keckpkmwrs vviqkgntll iqdvqeedgg nytcelkfeg klirrtvelk vtalltdkpp
      241 kplfpmenqp tvidvqlgnp ltvackaffg fsgesgpmiy wmkgekfiee leghiregev
      301 rllrehlgek eveltlifda veeadlanyt chvenrngrk hasvllrkkd liykielagg
      361 lgaillllil fvtiykcyni elmlfyrqnf ggdeaaddnk eydaylsytk vdpdaldcen
      421 neeeqfalei lpdvlekhyg yklfipdrdl ipsgtyiedl trcveqsrrl iivltpdyvl
      481 rrgwsifeme nrlhnmlvsg eikviliect elkgkvnyhe veslkhtikl lsvvkwkgpk
      541 ssklnskfwk rlvfempgkk kevlsrhqvl dsaeqglfgd lqtvpslavt gtsatlvesq
      601 adltdyhqad avqmrhycrg yeydvsaatl piasisnhht ccnipltlln gqlplnntvk
      661 dpqefhrnnp llplsakels ftsdiw
//
LOCUS       XP_053931298             686 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931298
VERSION     XP_053931298.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075323.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X1"
                     /calculated_mol_wt=78296
     Region          32..134
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          33..36
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(34,36..41)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          48..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          84..86
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          93..97
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          112..120
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          123..134
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          146..237
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(146..148,150..153,159,164,166,198,236)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          148..153
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          176..181
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          184..186
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          191..195
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          197..202
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          211..220
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          223..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          250..347
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          278..282
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          315..318
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          328..333
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..344
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          401..559
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..686
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075323.1:4230..6290"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkplvllvlv ictvvsmnlk lvskrnsvdg cidwsvdlkt ymalagepvr vkcalfysyi
       61 rtnysmaqst glrlmwyknk gdleepiifs evrmskdeds iwfhsvelqd sgfytcvlrn
      121 stycmkvsms ltvaenesgl cynskiryle ksevtkrkti scpdiedyet agqepdvvwy
      181 keckpkmwrs vviqkgntll iqdvqeedgg nytcelkfeg klirrtvelk vtalltdkpp
      241 kplfpmenqp tvidvqlgnp ltvackaffg fsgesgpmiy wmkgekfiee leghiregev
      301 rllrehlgek eveltlifda veeadlanyt chvenrngrk hasvllrkkd liykielagg
      361 lgaillllil fvtiykcyni elmlfyrqnf ggdeaaddnk eydaylsytk vdpdaldcen
      421 neeeqfalei lpdvlekhyg yklfipdrdl ipsgtyiedl trcveqsrrl iivltpdyvl
      481 rrgwsifeme nrlhnmlvsg eikviliect elkgkvnyhe veslkhtikl lsvvkwkgpk
      541 ssklnskfwk rlvfempgkk kevlsrhqvl dsaeqglfgd lqtvpslavt gtsatlvesq
      601 adltdyhqad avqmrhycrg yeydvsaatl piasisnhht ccnipltlln gqlplnntvk
      661 dpqefhrnnp llplsakels ftsdiw
//
LOCUS       XP_053931299             686 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931299
VERSION     XP_053931299.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075324.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X1"
                     /calculated_mol_wt=78296
     Region          32..134
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          33..36
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(34,36..41)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          48..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          84..86
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          93..97
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          112..120
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          123..134
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          146..237
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(146..148,150..153,159,164,166,198,236)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          148..153
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          176..181
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          184..186
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          191..195
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          197..202
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          211..220
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          223..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          250..347
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          278..282
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          315..318
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          328..333
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..344
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          401..559
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..686
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075324.1:4139..6199"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkplvllvlv ictvvsmnlk lvskrnsvdg cidwsvdlkt ymalagepvr vkcalfysyi
       61 rtnysmaqst glrlmwyknk gdleepiifs evrmskdeds iwfhsvelqd sgfytcvlrn
      121 stycmkvsms ltvaenesgl cynskiryle ksevtkrkti scpdiedyet agqepdvvwy
      181 keckpkmwrs vviqkgntll iqdvqeedgg nytcelkfeg klirrtvelk vtalltdkpp
      241 kplfpmenqp tvidvqlgnp ltvackaffg fsgesgpmiy wmkgekfiee leghiregev
      301 rllrehlgek eveltlifda veeadlanyt chvenrngrk hasvllrkkd liykielagg
      361 lgaillllil fvtiykcyni elmlfyrqnf ggdeaaddnk eydaylsytk vdpdaldcen
      421 neeeqfalei lpdvlekhyg yklfipdrdl ipsgtyiedl trcveqsrrl iivltpdyvl
      481 rrgwsifeme nrlhnmlvsg eikviliect elkgkvnyhe veslkhtikl lsvvkwkgpk
      541 ssklnskfwk rlvfempgkk kevlsrhqvl dsaeqglfgd lqtvpslavt gtsatlvesq
      601 adltdyhqad avqmrhycrg yeydvsaatl piasisnhht ccnipltlln gqlplnntvk
      661 dpqefhrnnp llplsakels ftsdiw
//
LOCUS       XP_053931300             686 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931300
VERSION     XP_053931300.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075325.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X1"
                     /calculated_mol_wt=78296
     Region          32..134
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          33..36
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(34,36..41)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          48..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          84..86
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          93..97
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          112..120
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          123..134
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          146..237
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(146..148,150..153,159,164,166,198,236)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          148..153
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          176..181
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          184..186
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          191..195
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          197..202
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          211..220
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          223..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          250..347
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          278..282
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          315..318
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          328..333
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..344
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          401..559
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..686
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075325.1:3622..5682"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkplvllvlv ictvvsmnlk lvskrnsvdg cidwsvdlkt ymalagepvr vkcalfysyi
       61 rtnysmaqst glrlmwyknk gdleepiifs evrmskdeds iwfhsvelqd sgfytcvlrn
      121 stycmkvsms ltvaenesgl cynskiryle ksevtkrkti scpdiedyet agqepdvvwy
      181 keckpkmwrs vviqkgntll iqdvqeedgg nytcelkfeg klirrtvelk vtalltdkpp
      241 kplfpmenqp tvidvqlgnp ltvackaffg fsgesgpmiy wmkgekfiee leghiregev
      301 rllrehlgek eveltlifda veeadlanyt chvenrngrk hasvllrkkd liykielagg
      361 lgaillllil fvtiykcyni elmlfyrqnf ggdeaaddnk eydaylsytk vdpdaldcen
      421 neeeqfalei lpdvlekhyg yklfipdrdl ipsgtyiedl trcveqsrrl iivltpdyvl
      481 rrgwsifeme nrlhnmlvsg eikviliect elkgkvnyhe veslkhtikl lsvvkwkgpk
      541 ssklnskfwk rlvfempgkk kevlsrhqvl dsaeqglfgd lqtvpslavt gtsatlvesq
      601 adltdyhqad avqmrhycrg yeydvsaatl piasisnhht ccnipltlln gqlplnntvk
      661 dpqefhrnnp llplsakels ftsdiw
//
LOCUS       XP_053931301             686 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931301
VERSION     XP_053931301.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075326.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X1"
                     /calculated_mol_wt=78296
     Region          32..134
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          33..36
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(34,36..41)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          48..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          84..86
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          93..97
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          112..120
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          123..134
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          146..237
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(146..148,150..153,159,164,166,198,236)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          148..153
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          176..181
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          184..186
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          191..195
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          197..202
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          211..220
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          223..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          250..347
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          278..282
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          315..318
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          328..333
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..344
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          401..559
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..686
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075326.1:2020..4080"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkplvllvlv ictvvsmnlk lvskrnsvdg cidwsvdlkt ymalagepvr vkcalfysyi
       61 rtnysmaqst glrlmwyknk gdleepiifs evrmskdeds iwfhsvelqd sgfytcvlrn
      121 stycmkvsms ltvaenesgl cynskiryle ksevtkrkti scpdiedyet agqepdvvwy
      181 keckpkmwrs vviqkgntll iqdvqeedgg nytcelkfeg klirrtvelk vtalltdkpp
      241 kplfpmenqp tvidvqlgnp ltvackaffg fsgesgpmiy wmkgekfiee leghiregev
      301 rllrehlgek eveltlifda veeadlanyt chvenrngrk hasvllrkkd liykielagg
      361 lgaillllil fvtiykcyni elmlfyrqnf ggdeaaddnk eydaylsytk vdpdaldcen
      421 neeeqfalei lpdvlekhyg yklfipdrdl ipsgtyiedl trcveqsrrl iivltpdyvl
      481 rrgwsifeme nrlhnmlvsg eikviliect elkgkvnyhe veslkhtikl lsvvkwkgpk
      541 ssklnskfwk rlvfempgkk kevlsrhqvl dsaeqglfgd lqtvpslavt gtsatlvesq
      601 adltdyhqad avqmrhycrg yeydvsaatl piasisnhht ccnipltlln gqlplnntvk
      661 dpqefhrnnp llplsakels ftsdiw
//
LOCUS       XP_053931303             686 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931303
VERSION     XP_053931303.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075328.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X1"
                     /calculated_mol_wt=78296
     Region          32..134
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          33..36
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(34,36..41)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          48..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          84..86
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          93..97
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          112..120
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          123..134
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          146..237
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(146..148,150..153,159,164,166,198,236)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          148..153
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          176..181
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          184..186
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          191..195
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          197..202
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          211..220
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          223..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          250..347
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          278..282
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          315..318
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          328..333
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..344
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          401..559
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..686
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075328.1:1686..3746"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkplvllvlv ictvvsmnlk lvskrnsvdg cidwsvdlkt ymalagepvr vkcalfysyi
       61 rtnysmaqst glrlmwyknk gdleepiifs evrmskdeds iwfhsvelqd sgfytcvlrn
      121 stycmkvsms ltvaenesgl cynskiryle ksevtkrkti scpdiedyet agqepdvvwy
      181 keckpkmwrs vviqkgntll iqdvqeedgg nytcelkfeg klirrtvelk vtalltdkpp
      241 kplfpmenqp tvidvqlgnp ltvackaffg fsgesgpmiy wmkgekfiee leghiregev
      301 rllrehlgek eveltlifda veeadlanyt chvenrngrk hasvllrkkd liykielagg
      361 lgaillllil fvtiykcyni elmlfyrqnf ggdeaaddnk eydaylsytk vdpdaldcen
      421 neeeqfalei lpdvlekhyg yklfipdrdl ipsgtyiedl trcveqsrrl iivltpdyvl
      481 rrgwsifeme nrlhnmlvsg eikviliect elkgkvnyhe veslkhtikl lsvvkwkgpk
      541 ssklnskfwk rlvfempgkk kevlsrhqvl dsaeqglfgd lqtvpslavt gtsatlvesq
      601 adltdyhqad avqmrhycrg yeydvsaatl piasisnhht ccnipltlln gqlplnntvk
      661 dpqefhrnnp llplsakels ftsdiw
//
LOCUS       XP_053931304             686 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931304
VERSION     XP_053931304.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075329.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X1"
                     /calculated_mol_wt=78296
     Region          32..134
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          33..36
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(34,36..41)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          48..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          84..86
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          93..97
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          112..120
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          123..134
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          146..237
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(146..148,150..153,159,164,166,198,236)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          148..153
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          176..181
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          184..186
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          191..195
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          197..202
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          211..220
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          223..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          250..347
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          278..282
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          315..318
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          328..333
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..344
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          401..559
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..686
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075329.1:988..3048"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkplvllvlv ictvvsmnlk lvskrnsvdg cidwsvdlkt ymalagepvr vkcalfysyi
       61 rtnysmaqst glrlmwyknk gdleepiifs evrmskdeds iwfhsvelqd sgfytcvlrn
      121 stycmkvsms ltvaenesgl cynskiryle ksevtkrkti scpdiedyet agqepdvvwy
      181 keckpkmwrs vviqkgntll iqdvqeedgg nytcelkfeg klirrtvelk vtalltdkpp
      241 kplfpmenqp tvidvqlgnp ltvackaffg fsgesgpmiy wmkgekfiee leghiregev
      301 rllrehlgek eveltlifda veeadlanyt chvenrngrk hasvllrkkd liykielagg
      361 lgaillllil fvtiykcyni elmlfyrqnf ggdeaaddnk eydaylsytk vdpdaldcen
      421 neeeqfalei lpdvlekhyg yklfipdrdl ipsgtyiedl trcveqsrrl iivltpdyvl
      481 rrgwsifeme nrlhnmlvsg eikviliect elkgkvnyhe veslkhtikl lsvvkwkgpk
      541 ssklnskfwk rlvfempgkk kevlsrhqvl dsaeqglfgd lqtvpslavt gtsatlvesq
      601 adltdyhqad avqmrhycrg yeydvsaatl piasisnhht ccnipltlln gqlplnntvk
      661 dpqefhrnnp llplsakels ftsdiw
//
LOCUS       XP_053931305             686 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931305
VERSION     XP_053931305.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075330.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X1"
                     /calculated_mol_wt=78296
     Region          32..134
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          33..36
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(34,36..41)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          48..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          84..86
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          93..97
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          112..120
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          123..134
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          146..237
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(146..148,150..153,159,164,166,198,236)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          148..153
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          176..181
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          184..186
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          191..195
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          197..202
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          211..220
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          223..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          250..347
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          278..282
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          315..318
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          328..333
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..344
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          401..559
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..686
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075330.1:566..2626"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkplvllvlv ictvvsmnlk lvskrnsvdg cidwsvdlkt ymalagepvr vkcalfysyi
       61 rtnysmaqst glrlmwyknk gdleepiifs evrmskdeds iwfhsvelqd sgfytcvlrn
      121 stycmkvsms ltvaenesgl cynskiryle ksevtkrkti scpdiedyet agqepdvvwy
      181 keckpkmwrs vviqkgntll iqdvqeedgg nytcelkfeg klirrtvelk vtalltdkpp
      241 kplfpmenqp tvidvqlgnp ltvackaffg fsgesgpmiy wmkgekfiee leghiregev
      301 rllrehlgek eveltlifda veeadlanyt chvenrngrk hasvllrkkd liykielagg
      361 lgaillllil fvtiykcyni elmlfyrqnf ggdeaaddnk eydaylsytk vdpdaldcen
      421 neeeqfalei lpdvlekhyg yklfipdrdl ipsgtyiedl trcveqsrrl iivltpdyvl
      481 rrgwsifeme nrlhnmlvsg eikviliect elkgkvnyhe veslkhtikl lsvvkwkgpk
      541 ssklnskfwk rlvfempgkk kevlsrhqvl dsaeqglfgd lqtvpslavt gtsatlvesq
      601 adltdyhqad avqmrhycrg yeydvsaatl piasisnhht ccnipltlln gqlplnntvk
      661 dpqefhrnnp llplsakels ftsdiw
//
LOCUS       XP_053931306             686 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931306
VERSION     XP_053931306.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075331.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X1"
                     /calculated_mol_wt=78296
     Region          32..134
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          33..36
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(34,36..41)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          48..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          84..86
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          93..97
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          112..120
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          123..134
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          146..237
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(146..148,150..153,159,164,166,198,236)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          148..153
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          176..181
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          184..186
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          191..195
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          197..202
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          211..220
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          223..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          250..347
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          278..282
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          315..318
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          328..333
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..344
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          401..559
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..686
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075331.1:561..2621"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkplvllvlv ictvvsmnlk lvskrnsvdg cidwsvdlkt ymalagepvr vkcalfysyi
       61 rtnysmaqst glrlmwyknk gdleepiifs evrmskdeds iwfhsvelqd sgfytcvlrn
      121 stycmkvsms ltvaenesgl cynskiryle ksevtkrkti scpdiedyet agqepdvvwy
      181 keckpkmwrs vviqkgntll iqdvqeedgg nytcelkfeg klirrtvelk vtalltdkpp
      241 kplfpmenqp tvidvqlgnp ltvackaffg fsgesgpmiy wmkgekfiee leghiregev
      301 rllrehlgek eveltlifda veeadlanyt chvenrngrk hasvllrkkd liykielagg
      361 lgaillllil fvtiykcyni elmlfyrqnf ggdeaaddnk eydaylsytk vdpdaldcen
      421 neeeqfalei lpdvlekhyg yklfipdrdl ipsgtyiedl trcveqsrrl iivltpdyvl
      481 rrgwsifeme nrlhnmlvsg eikviliect elkgkvnyhe veslkhtikl lsvvkwkgpk
      541 ssklnskfwk rlvfempgkk kevlsrhqvl dsaeqglfgd lqtvpslavt gtsatlvesq
      601 adltdyhqad avqmrhycrg yeydvsaatl piasisnhht ccnipltlln gqlplnntvk
      661 dpqefhrnnp llplsakels ftsdiw
//
LOCUS       XP_053931307             686 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931307
VERSION     XP_053931307.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075332.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X1"
                     /calculated_mol_wt=78296
     Region          32..134
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          33..36
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(34,36..41)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          48..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          84..86
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          93..97
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          112..120
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          123..134
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          146..237
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(146..148,150..153,159,164,166,198,236)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          148..153
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          176..181
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          184..186
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          191..195
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          197..202
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          211..220
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          223..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          250..347
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          278..282
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          315..318
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          328..333
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..344
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          401..559
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..686
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075332.1:425..2485"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkplvllvlv ictvvsmnlk lvskrnsvdg cidwsvdlkt ymalagepvr vkcalfysyi
       61 rtnysmaqst glrlmwyknk gdleepiifs evrmskdeds iwfhsvelqd sgfytcvlrn
      121 stycmkvsms ltvaenesgl cynskiryle ksevtkrkti scpdiedyet agqepdvvwy
      181 keckpkmwrs vviqkgntll iqdvqeedgg nytcelkfeg klirrtvelk vtalltdkpp
      241 kplfpmenqp tvidvqlgnp ltvackaffg fsgesgpmiy wmkgekfiee leghiregev
      301 rllrehlgek eveltlifda veeadlanyt chvenrngrk hasvllrkkd liykielagg
      361 lgaillllil fvtiykcyni elmlfyrqnf ggdeaaddnk eydaylsytk vdpdaldcen
      421 neeeqfalei lpdvlekhyg yklfipdrdl ipsgtyiedl trcveqsrrl iivltpdyvl
      481 rrgwsifeme nrlhnmlvsg eikviliect elkgkvnyhe veslkhtikl lsvvkwkgpk
      541 ssklnskfwk rlvfempgkk kevlsrhqvl dsaeqglfgd lqtvpslavt gtsatlvesq
      601 adltdyhqad avqmrhycrg yeydvsaatl piasisnhht ccnipltlln gqlplnntvk
      661 dpqefhrnnp llplsakels ftsdiw
//
LOCUS       XP_053931308             686 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931308
VERSION     XP_053931308.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075333.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X1"
                     /calculated_mol_wt=78296
     Region          32..134
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          33..36
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(34,36..41)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          48..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          84..86
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          93..97
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          112..120
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          123..134
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          146..237
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(146..148,150..153,159,164,166,198,236)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          148..153
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          176..181
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          184..186
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          191..195
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          197..202
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          211..220
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          223..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          250..347
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          278..282
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          315..318
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          328..333
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..344
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          401..559
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..686
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075333.1:59..2119"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkplvllvlv ictvvsmnlk lvskrnsvdg cidwsvdlkt ymalagepvr vkcalfysyi
       61 rtnysmaqst glrlmwyknk gdleepiifs evrmskdeds iwfhsvelqd sgfytcvlrn
      121 stycmkvsms ltvaenesgl cynskiryle ksevtkrkti scpdiedyet agqepdvvwy
      181 keckpkmwrs vviqkgntll iqdvqeedgg nytcelkfeg klirrtvelk vtalltdkpp
      241 kplfpmenqp tvidvqlgnp ltvackaffg fsgesgpmiy wmkgekfiee leghiregev
      301 rllrehlgek eveltlifda veeadlanyt chvenrngrk hasvllrkkd liykielagg
      361 lgaillllil fvtiykcyni elmlfyrqnf ggdeaaddnk eydaylsytk vdpdaldcen
      421 neeeqfalei lpdvlekhyg yklfipdrdl ipsgtyiedl trcveqsrrl iivltpdyvl
      481 rrgwsifeme nrlhnmlvsg eikviliect elkgkvnyhe veslkhtikl lsvvkwkgpk
      541 ssklnskfwk rlvfempgkk kevlsrhqvl dsaeqglfgd lqtvpslavt gtsatlvesq
      601 adltdyhqad avqmrhycrg yeydvsaatl piasisnhht ccnipltlln gqlplnntvk
      661 dpqefhrnnp llplsakels ftsdiw
//
LOCUS       XP_053931309             686 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931309
VERSION     XP_053931309.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075334.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..686
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X1"
                     /calculated_mol_wt=78296
     Region          32..134
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          33..36
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(34,36..41)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          40..44
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          48..53
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          84..86
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          93..97
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          99..103
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          112..120
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          123..134
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          146..237
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(146..148,150..153,159,164,166,198,236)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          148..153
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          158..162
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          176..181
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          184..186
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          191..195
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          197..202
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          211..220
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          223..236
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          250..347
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          278..282
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          315..318
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          328..333
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     Region          341..344
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409353"
     Region          401..559
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..686
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075334.1:170..2230"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkplvllvlv ictvvsmnlk lvskrnsvdg cidwsvdlkt ymalagepvr vkcalfysyi
       61 rtnysmaqst glrlmwyknk gdleepiifs evrmskdeds iwfhsvelqd sgfytcvlrn
      121 stycmkvsms ltvaenesgl cynskiryle ksevtkrkti scpdiedyet agqepdvvwy
      181 keckpkmwrs vviqkgntll iqdvqeedgg nytcelkfeg klirrtvelk vtalltdkpp
      241 kplfpmenqp tvidvqlgnp ltvackaffg fsgesgpmiy wmkgekfiee leghiregev
      301 rllrehlgek eveltlifda veeadlanyt chvenrngrk hasvllrkkd liykielagg
      361 lgaillllil fvtiykcyni elmlfyrqnf ggdeaaddnk eydaylsytk vdpdaldcen
      421 neeeqfalei lpdvlekhyg yklfipdrdl ipsgtyiedl trcveqsrrl iivltpdyvl
      481 rrgwsifeme nrlhnmlvsg eikviliect elkgkvnyhe veslkhtikl lsvvkwkgpk
      541 ssklnskfwk rlvfempgkk kevlsrhqvl dsaeqglfgd lqtvpslavt gtsatlvesq
      601 adltdyhqad avqmrhycrg yeydvsaatl piasisnhht ccnipltlln gqlplnntvk
      661 dpqefhrnnp llplsakels ftsdiw
//
LOCUS       XP_053931310             666 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053931310
VERSION     XP_053931310.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075335.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..666
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X2"
                     /calculated_mol_wt=76185
     Region          12..114
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          13..16
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(14,16..21)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          20..24
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          28..33
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          53..57
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          64..66
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          73..77
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          79..83
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          92..100
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          103..114
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          126..217
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(126..128,130..133,139,144,146,178,216)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          128..133
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          138..142
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          156..161
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          164..166
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          171..175
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          177..182
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          191..200
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          203..216
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          230..327
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          258..262
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409475"
     Region          295..298
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409475"
     Region          308..313
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409475"
     Region          321..324
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409475"
     Region          381..539
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..666
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075335.1:947..2947"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mlklldrvdg cidwsvdlkt ymalagepvr vkcalfysyi rtnysmaqst glrlmwyknk
       61 gdleepiifs evrmskdeds iwfhsvelqd sgfytcvlrn stycmkvsms ltvaenesgl
      121 cynskiryle ksevtkrkti scpdiedyet agqepdvvwy keckpkmwrs vviqkgntll
      181 iqdvqeedgg nytcelkfeg klirrtvelk vtalltdkpp kplfpmenqp tvidvqlgnp
      241 ltvackaffg fsgesgpmiy wmkgekfiee leghiregev rllrehlgek eveltlifda
      301 veeadlanyt chvenrngrk hasvllrkkd liykielagg lgaillllil fvtiykcyni
      361 elmlfyrqnf ggdeaaddnk eydaylsytk vdpdaldcen neeeqfalei lpdvlekhyg
      421 yklfipdrdl ipsgtyiedl trcveqsrrl iivltpdyvl rrgwsifeme nrlhnmlvsg
      481 eikviliect elkgkvnyhe veslkhtikl lsvvkwkgpk ssklnskfwk rlvfempgkk
      541 kevlsrhqvl dsaeqglfgd lqtvpslavt gtsatlvesq adltdyhqad avqmrhycrg
      601 yeydvsaatl piasisnhht ccnipltlln gqlplnntvk dpqefhrnnp llplsakels
      661 ftsdiw
//
LOCUS       XP_053931311             665 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053931311
VERSION     XP_053931311.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075336.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..665
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X3"
                     /calculated_mol_wt=75960
     Region          11..113
                     /region_name="Ig1_IL1RAPL-1_like"
                     /note="First immunoglobulin (Ig)-like domain of X-linked
                     interleukin-1 receptor accessory protein-like 1
                     (IL1RAPL-1), and similar domains; cd05896"
                     /db_xref="CDD:409477"
     Region          12..15
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409477"
     Site            order(13,15..20)
                     /site_type="other"
                     /note="putative antagonist binding site [polypeptide
                     binding]"
                     /db_xref="CDD:409477"
     Region          19..23
                     /region_name="Ig strand A'"
                     /note="Ig strand A' [structural motif]"
                     /db_xref="CDD:409477"
     Region          27..32
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          52..56
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          63..65
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409477"
     Region          72..76
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409477"
     Region          78..82
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          91..99
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          102..113
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          125..216
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(125..127,129..132,138,143,145,177,215)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          127..132
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          137..141
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          155..160
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          163..165
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          170..174
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          176..181
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          190..199
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          202..215
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          229..326
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          257..261
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409475"
     Region          294..297
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409475"
     Region          307..312
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409475"
     Region          320..323
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409475"
     Region          380..538
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..665
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075336.1:4649..6646"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mllaclvdgc idwsvdlkty malagepvrv kcalfysyir tnysmaqstg lrlmwyknkg
       61 dleepiifse vrmskdedsi wfhsvelqds gfytcvlrns tycmkvsmsl tvaenesglc
      121 ynskirylek sevtkrktis cpdiedyeta gqepdvvwyk eckpkmwrsv viqkgntlli
      181 qdvqeedggn ytcelkfegk lirrtvelkv talltdkppk plfpmenqpt vidvqlgnpl
      241 tvackaffgf sgesgpmiyw mkgekfieel eghiregevr llrehlgeke veltlifdav
      301 eeadlanytc hvenrngrkh asvllrkkdl iykielaggl gaillllilf vtiykcynie
      361 lmlfyrqnfg gdeaaddnke ydaylsytkv dpdaldcenn eeeqfaleil pdvlekhygy
      421 klfipdrdli psgtyiedlt rcveqsrrli ivltpdyvlr rgwsifemen rlhnmlvsge
      481 ikviliecte lkgkvnyhev eslkhtikll svvkwkgpks sklnskfwkr lvfempgkkk
      541 evlsrhqvld saeqglfgdl qtvpslavtg tsatlvesqa dltdyhqada vqmrhycrgy
      601 eydvsaatlp iasisnhhtc cnipltllng qlplnntvkd pqefhrnnpl lplsakelsf
      661 tsdiw
//
LOCUS       XP_053931312             645 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X4
            [Cuculus canorus].
ACCESSION   XP_053931312
VERSION     XP_053931312.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075337.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..645
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X4"
                     /calculated_mol_wt=73719
     Region          1..93
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          8..12
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          32..36
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          58..62
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          72..77
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          85..88
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          105..196
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(105..107,109..112,118,123,125,157,195)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          107..112
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          117..121
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          135..140
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          143..145
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          150..154
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          156..161
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          170..179
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          182..195
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          209..306
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          237..241
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409475"
     Region          274..277
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409475"
     Region          287..292
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409475"
     Region          300..303
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409475"
     Region          360..518
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..645
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075337.1:4304..6241"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 malagepvrv kcalfysyir tnysmaqstg lrlmwyknkg dleepiifse vrmskdedsi
       61 wfhsvelqds gfytcvlrns tycmkvsmsl tvaenesglc ynskirylek sevtkrktis
      121 cpdiedyeta gqepdvvwyk eckpkmwrsv viqkgntlli qdvqeedggn ytcelkfegk
      181 lirrtvelkv talltdkppk plfpmenqpt vidvqlgnpl tvackaffgf sgesgpmiyw
      241 mkgekfieel eghiregevr llrehlgeke veltlifdav eeadlanytc hvenrngrkh
      301 asvllrkkdl iykielaggl gaillllilf vtiykcynie lmlfyrqnfg gdeaaddnke
      361 ydaylsytkv dpdaldcenn eeeqfaleil pdvlekhygy klfipdrdli psgtyiedlt
      421 rcveqsrrli ivltpdyvlr rgwsifemen rlhnmlvsge ikviliecte lkgkvnyhev
      481 eslkhtikll svvkwkgpks sklnskfwkr lvfempgkkk evlsrhqvld saeqglfgdl
      541 qtvpslavtg tsatlvesqa dltdyhqada vqmrhycrgy eydvsaatlp iasisnhhtc
      601 cnipltllng qlplnntvkd pqefhrnnpl lplsakelsf tsdiw
//
LOCUS       XP_053931314             645 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X4
            [Cuculus canorus].
ACCESSION   XP_053931314
VERSION     XP_053931314.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075339.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..645
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X4"
                     /calculated_mol_wt=73719
     Region          1..93
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          8..12
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409477"
     Region          32..36
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409477"
     Region          58..62
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409477"
     Region          72..77
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409477"
     Region          85..88
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409477"
     Region          105..196
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(105..107,109..112,118,123,125,157,195)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          107..112
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          117..121
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          135..140
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          143..145
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          150..154
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          156..161
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          170..179
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          182..195
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          209..306
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          237..241
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409475"
     Region          274..277
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409475"
     Region          287..292
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409475"
     Region          300..303
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409475"
     Region          360..518
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..645
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075339.1:588..2525"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 malagepvrv kcalfysyir tnysmaqstg lrlmwyknkg dleepiifse vrmskdedsi
       61 wfhsvelqds gfytcvlrns tycmkvsmsl tvaenesglc ynskirylek sevtkrktis
      121 cpdiedyeta gqepdvvwyk eckpkmwrsv viqkgntlli qdvqeedggn ytcelkfegk
      181 lirrtvelkv talltdkppk plfpmenqpt vidvqlgnpl tvackaffgf sgesgpmiyw
      241 mkgekfieel eghiregevr llrehlgeke veltlifdav eeadlanytc hvenrngrkh
      301 asvllrkkdl iykielaggl gaillllilf vtiykcynie lmlfyrqnfg gdeaaddnke
      361 ydaylsytkv dpdaldcenn eeeqfaleil pdvlekhygy klfipdrdli psgtyiedlt
      421 rcveqsrrli ivltpdyvlr rgwsifemen rlhnmlvsge ikviliecte lkgkvnyhev
      481 eslkhtikll svvkwkgpks sklnskfwkr lvfempgkkk evlsrhqvld saeqglfgdl
      541 qtvpslavtg tsatlvesqa dltdyhqada vqmrhycrgy eydvsaatlp iasisnhhtc
      601 cnipltllng qlplnntvkd pqefhrnnpl lplsakelsf tsdiw
//
LOCUS       XP_053931315             562 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X5
            [Cuculus canorus].
ACCESSION   XP_053931315
VERSION     XP_053931315.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075340.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..562
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X5"
                     /calculated_mol_wt=64045
     Region          22..113
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(22..24,26..29,35,40,42,74,112)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          24..29
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          34..38
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          52..57
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          60..62
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          67..71
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          73..78
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          87..96
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          99..112
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          126..223
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          154..158
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409475"
     Region          191..194
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409475"
     Region          204..209
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409475"
     Region          217..220
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409475"
     Region          277..435
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..562
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075340.1:253..1941"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkvsmsltva enesglcyns kiryleksev tkrktiscpd iedyetagqe pdvvwykeck
       61 pkmwrsvviq kgntlliqdv qeedggnytc elkfegklir rtvelkvtal ltdkppkplf
      121 pmenqptvid vqlgnpltva ckaffgfsge sgpmiywmkg ekfieelegh iregevrllr
      181 ehlgekevel tlifdaveea dlanytchve nrngrkhasv llrkkdliyk ielagglgai
      241 llllilfvti ykcynielml fyrqnfggde aaddnkeyda ylsytkvdpd aldcenneee
      301 qfaleilpdv lekhygyklf ipdrdlipsg tyiedltrcv eqsrrliivl tpdyvlrrgw
      361 sifemenrlh nmlvsgeikv iliectelkg kvnyhevesl khtikllsvv kwkgpksskl
      421 nskfwkrlvf empgkkkevl srhqvldsae qglfgdlqtv pslavtgtsa tlvesqadlt
      481 dyhqadavqm rhycrgyeyd vsaatlpias isnhhtccni pltllngqlp lnntvkdpqe
      541 fhrnnpllpl sakelsftsd iw
//
LOCUS       XP_053931316             562 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X5
            [Cuculus canorus].
ACCESSION   XP_053931316
VERSION     XP_053931316.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075341.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..562
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X5"
                     /calculated_mol_wt=64045
     Region          22..113
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(22..24,26..29,35,40,42,74,112)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          24..29
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          34..38
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          52..57
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          60..62
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          67..71
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          73..78
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          87..96
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          99..112
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          126..223
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          154..158
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409475"
     Region          191..194
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409475"
     Region          204..209
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409475"
     Region          217..220
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409475"
     Region          277..435
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..562
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075341.1:118..1806"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkvsmsltva enesglcyns kiryleksev tkrktiscpd iedyetagqe pdvvwykeck
       61 pkmwrsvviq kgntlliqdv qeedggnytc elkfegklir rtvelkvtal ltdkppkplf
      121 pmenqptvid vqlgnpltva ckaffgfsge sgpmiywmkg ekfieelegh iregevrllr
      181 ehlgekevel tlifdaveea dlanytchve nrngrkhasv llrkkdliyk ielagglgai
      241 llllilfvti ykcynielml fyrqnfggde aaddnkeyda ylsytkvdpd aldcenneee
      301 qfaleilpdv lekhygyklf ipdrdlipsg tyiedltrcv eqsrrliivl tpdyvlrrgw
      361 sifemenrlh nmlvsgeikv iliectelkg kvnyhevesl khtikllsvv kwkgpksskl
      421 nskfwkrlvf empgkkkevl srhqvldsae qglfgdlqtv pslavtgtsa tlvesqadlt
      481 dyhqadavqm rhycrgyeyd vsaatlpias isnhhtccni pltllngqlp lnntvkdpqe
      541 fhrnnpllpl sakelsftsd iw
//
LOCUS       XP_053931317             562 aa            linear   VRT 09-MAR-2023
DEFINITION  X-linked interleukin-1 receptor accessory protein-like 2 isoform X5
            [Cuculus canorus].
ACCESSION   XP_053931317
VERSION     XP_053931317.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075342.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..562
                     /product="X-linked interleukin-1 receptor accessory
                     protein-like 2 isoform X5"
                     /calculated_mol_wt=64045
     Region          22..113
                     /region_name="Ig2_IL1R-like"
                     /note="Second immunoglobulin (Ig)-like domain of
                     interleukin-1 receptor (IL1R), and similar domains;
                     cd05757"
                     /db_xref="CDD:409415"
     Site            order(22..24,26..29,35,40,42,74,112)
                     /site_type="other"
                     /note="antagonist binding site [polypeptide binding]"
                     /db_xref="CDD:409415"
     Region          24..29
                     /region_name="Ig strand A"
                     /note="Ig strand A [structural motif]"
                     /db_xref="CDD:409415"
     Region          34..38
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409415"
     Region          52..57
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409415"
     Region          60..62
                     /region_name="Ig strand C'"
                     /note="Ig strand C' [structural motif]"
                     /db_xref="CDD:409415"
     Region          67..71
                     /region_name="Ig strand D"
                     /note="Ig strand D [structural motif]"
                     /db_xref="CDD:409415"
     Region          73..78
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409415"
     Region          87..96
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409415"
     Region          99..112
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409415"
     Region          126..223
                     /region_name="IG_like"
                     /note="Immunoglobulin like; smart00410"
                     /db_xref="CDD:214653"
     Region          154..158
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409475"
     Region          191..194
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409475"
     Region          204..209
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409475"
     Region          217..220
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:409475"
     Region          277..435
                     /region_name="TIR"
                     /note="Toll - interleukin 1 - resistance; smart00255"
                     /db_xref="CDD:214587"
     CDS             1..562
                     /gene="IL1RAPL2"
                     /coded_by="XM_054075342.1:277..1965"
                     /db_xref="GeneID:104064026"
ORIGIN      
        1 mkvsmsltva enesglcyns kiryleksev tkrktiscpd iedyetagqe pdvvwykeck
       61 pkmwrsvviq kgntlliqdv qeedggnytc elkfegklir rtvelkvtal ltdkppkplf
      121 pmenqptvid vqlgnpltva ckaffgfsge sgpmiywmkg ekfieelegh iregevrllr
      181 ehlgekevel tlifdaveea dlanytchve nrngrkhasv llrkkdliyk ielagglgai
      241 llllilfvti ykcynielml fyrqnfggde aaddnkeyda ylsytkvdpd aldcenneee
      301 qfaleilpdv lekhygyklf ipdrdlipsg tyiedltrcv eqsrrliivl tpdyvlrrgw
      361 sifemenrlh nmlvsgeikv iliectelkg kvnyhevesl khtikllsvv kwkgpksskl
      421 nskfwkrlvf empgkkkevl srhqvldsae qglfgdlqtv pslavtgtsa tlvesqadlt
      481 dyhqadavqm rhycrgyeyd vsaatlpias isnhhtccni pltllngqlp lnntvkdpqe
      541 fhrnnpllpl sakelsftsd iw
//
LOCUS       XP_053931318             281 aa            linear   VRT 09-MAR-2023
DEFINITION  uracil phosphoribosyltransferase homolog [Cuculus canorus].
ACCESSION   XP_053931318
VERSION     XP_053931318.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075343.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..281
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..281
                     /product="uracil phosphoribosyltransferase homolog"
                     /calculated_mol_wt=30033
     Region          90..280
                     /region_name="UPRTase"
                     /note="Uracil phosphoribosyltransferase; pfam14681"
                     /db_xref="CDD:434124"
     Site            order(157,159,210..212,214..218,244)
                     /site_type="active"
                     /db_xref="CDD:206754"
     CDS             1..281
                     /gene="UPRT"
                     /coded_by="XM_054075343.1:22..867"
                     /db_xref="GeneID:104058439"
ORIGIN      
        1 maampchnqr lgprpqdeps ppatataggg prllrfaepg adsgcpspds sssggggggd
       61 gaavpvpvpa gqgaaaplgt qlkllpmndq lrelqtiird kkssrgdfvf sadrlirlvv
      121 eeglnqlpyt ectvttptgh kyegvrfekg ncgvsimrsg eameqglrdc crsirigkil
      181 iqsdeetqra kvyyakfppd iyrrkvllmy pilstgntvi eavkvlvehg vqpsviills
      241 lfstphgaks iiqefpeiti lttevhpvap thfgqkyfgt d
//
LOCUS       XP_053931319             332 aa            linear   VRT 09-MAR-2023
DEFINITION  palmitoyltransferase ZDHHC15 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931319
VERSION     XP_053931319.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075344.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..332
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..332
                     /product="palmitoyltransferase ZDHHC15 isoform X1"
                     /calculated_mol_wt=38349
     Region          12..302
                     /region_name="DHHC"
                     /note="DHHC palmitoyltransferase; cl19890"
                     /db_xref="CDD:418707"
     CDS             1..332
                     /gene="ZDHHC15"
                     /coded_by="XM_054075344.1:51..1049"
                     /db_xref="GeneID:104058447"
ORIGIN      
        1 mavsrglrcc qrafawlpvl iialvvlwsy yayvcelclv tlsnpvekvv yliifhilfv
       61 lfvwtywksi ftlpvqpakk yhmsyadqer yeneerpevq rqilaeiark lpvytrtgsg
      121 girfcdrcql ikpdrchhcs vcavcvlkmd hhcpwvnnci gfsnykffll flaysllycl
      181 yiaatvfkyf ikywtgeltn grskfhvlfl lfvavmffvs lmflfgyhcw lvsrnrstle
      241 afsapvfqng pdkngfnlgf vknlqqvfge ekklwllpia ssqgnghffp mralseaqnp
      301 llaneeqwen dgidgepyds geasslaier et
//
LOCUS       XP_053931320             306 aa            linear   VRT 09-MAR-2023
DEFINITION  palmitoyltransferase ZDHHC15 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931320
VERSION     XP_053931320.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075345.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..306
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..306
                     /product="palmitoyltransferase ZDHHC15 isoform X2"
                     /calculated_mol_wt=35108
     Region          <97..276
                     /region_name="DHHC"
                     /note="DHHC palmitoyltransferase; cl19890"
                     /db_xref="CDD:418707"
     CDS             1..306
                     /gene="ZDHHC15"
                     /coded_by="XM_054075345.1:51..971"
                     /db_xref="GeneID:104058447"
ORIGIN      
        1 mavsrglrcc qrafawlpvl iialvvlwsy yayvcelclv tlsnpvekvq pakkyhmsya
       61 dqeryeneer pevqrqilae iarklpvytr tgsggirfcd rcqlikpdrc hhcsvcavcv
      121 lkmdhhcpwv nncigfsnyk ffllflaysl lyclyiaatv fkyfikywtg eltngrskfh
      181 vlfllfvavm ffvslmflfg yhcwlvsrnr stleafsapv fqngpdkngf nlgfvknlqq
      241 vfgeekklwl lpiassqgng hffpmralse aqnpllanee qwendgidge pydsgeassl
      301 aieret
//
LOCUS       XP_053931321            1125 aa            linear   VRT 09-MAR-2023
DEFINITION  TBC1 domain family member 8B isoform X1 [Cuculus canorus].
ACCESSION   XP_053931321
VERSION     XP_053931321.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075346.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1125
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1125
                     /product="TBC1 domain family member 8B isoform X1"
                     /calculated_mol_wt=128476
     Region          156..254
                     /region_name="PH-GRAM1_TBC1D8B"
                     /note="TBC1 domain family member 8B (TBC1D8B) Pleckstrin
                     Homology-Glucosyltransferases, Rab-like GTPase activators
                     and Myotubularins (PH-GRAM) domain, repeat 1; cd13350"
                     /db_xref="CDD:275419"
     Region          296..388
                     /region_name="PH-GRAM2_TBC1D8B"
                     /note="TBC1 domain family member 8B (TBC1D8B) Pleckstrin
                     Homology-Glucosyltransferases, Rab-like GTPase activators
                     and Myotubularins (PH-GRAM) domain, repeat 2; cd13352"
                     /db_xref="CDD:270159"
     Region          486..694
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     CDS             1..1125
                     /gene="TBC1D8B"
                     /coded_by="XM_054075346.1:56..3433"
                     /db_xref="GeneID:104064042"
ORIGIN      
        1 mwlkpeevll knalklwvqe rsnqyfvlqr rrgygeaggg glagllvgtl davldstskv
       61 apfrilhqtp dsqvywsiac gssreeitkh wdwlehnvmn tlsvfdsned itsfvqgkir
      121 gliaeegkgs fvkeddpekf regfmkfekc fglpeqeklv tyyscsywkg rvpcqgwlyl
      181 stnflsfysf llgaevklii swdeisklek tsnviltesi hvcahgedhy fsmflhinet
      241 fllmeqlany avrrlfdket fkndlvlhdp lqitkrglen rahseqfsaf frlpkeetlk
      301 evhecflwip fshynthgkm cisenyicfa sqdgslcsvi iplrevtgvd kadpanrgvs
      361 istkgktafr ftevrdfeql vaklrmkcna asspqhiint egaagsasds prdfdagpsk
      421 mdqrdnsktv vtealmtvyh pqdaenldsk mlkekmkeqs wnihfvergh gvsmfrtkkt
      481 rdlvvrgipe alrgelwllf sgavndmasn pgyytelvek slgtctlatd eierdlrrsl
      541 pehpafqsdt gisalrrvlt ayayrnpqig ycqamnilts vlllyakeee afwllvavce
      601 rmlpdyfnrr iigalvdqav feelirvhlp qltdhmtdmt ffssvslswf ltlfisvlpi
      661 esavnvvdcf fydgikailq lglavleynm eklltckdda eavtvlnrff dsvtnkdspl
      721 ppavqqgsnl sdtksdhpkv ditdliresn erygdiryed vesmrcrnrl sviqileatt
      781 kqnvlrvvsq dvkfspsdle elyelfkkeh flscywnvns palqhhdasl pyldqyridc
      841 qqfrvlchll spwshcanrd slalwtfrll dedsdrlinf kqfacvldtm yngsftdklk
      901 llfklhippa fteveslsps kegdlskeel iqfsqlsvss vgdslesdpl ksspekgkgk
      961 vdiqaylkqw qdellkkeen ikdlprmnqs qfiqfsktly dlfhgdpeee qlyraiavvt
     1021 slllkmeevg rrlqnptspv kssvavtevp aeipnegqee ssseqlegsr aqslrgnhew
     1081 sfafeqilas llnepafvrf fekphdiklk iesaknlqlk artrm
//
LOCUS       XP_053931322             768 aa            linear   VRT 09-MAR-2023
DEFINITION  TBC1 domain family member 8B isoform X2 [Cuculus canorus].
ACCESSION   XP_053931322
VERSION     XP_053931322.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075347.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..768
                     /product="TBC1 domain family member 8B isoform X2"
                     /calculated_mol_wt=87168
     Region          156..254
                     /region_name="PH-GRAM1_TBC1D8B"
                     /note="TBC1 domain family member 8B (TBC1D8B) Pleckstrin
                     Homology-Glucosyltransferases, Rab-like GTPase activators
                     and Myotubularins (PH-GRAM) domain, repeat 1; cd13350"
                     /db_xref="CDD:275419"
     Region          296..388
                     /region_name="PH-GRAM2_TBC1D8B"
                     /note="TBC1 domain family member 8B (TBC1D8B) Pleckstrin
                     Homology-Glucosyltransferases, Rab-like GTPase activators
                     and Myotubularins (PH-GRAM) domain, repeat 2; cd13352"
                     /db_xref="CDD:270159"
     Region          486..694
                     /region_name="TBC"
                     /note="Domain in Tre-2, BUB2p, and Cdc16p. Probable
                     Rab-GAPs; smart00164"
                     /db_xref="CDD:214540"
     CDS             1..768
                     /gene="TBC1D8B"
                     /coded_by="XM_054075347.1:58..2364"
                     /db_xref="GeneID:104064042"
ORIGIN      
        1 mwlkpeevll knalklwvqe rsnqyfvlqr rrgygeaggg glagllvgtl davldstskv
       61 apfrilhqtp dsqvywsiac gssreeitkh wdwlehnvmn tlsvfdsned itsfvqgkir
      121 gliaeegkgs fvkeddpekf regfmkfekc fglpeqeklv tyyscsywkg rvpcqgwlyl
      181 stnflsfysf llgaevklii swdeisklek tsnviltesi hvcahgedhy fsmflhinet
      241 fllmeqlany avrrlfdket fkndlvlhdp lqitkrglen rahseqfsaf frlpkeetlk
      301 evhecflwip fshynthgkm cisenyicfa sqdgslcsvi iplrevtgvd kadpanrgvs
      361 istkgktafr ftevrdfeql vaklrmkcna asspqhiint egaagsasds prdfdagpsk
      421 mdqrdnsktv vtealmtvyh pqdaenldsk mlkekmkeqs wnihfvergh gvsmfrtkkt
      481 rdlvvrgipe alrgelwllf sgavndmasn pgyytelvek slgtctlatd eierdlrrsl
      541 pehpafqsdt gisalrrvlt ayayrnpqig ycqamnilts vlllyakeee afwllvavce
      601 rmlpdyfnrr iigalvdqav feelirvhlp qltdhmtdmt ffssvslswf ltlfisvlpi
      661 esavnvvdcf fydgikailq lglavleynm eklltckdda eavtvlnrff dsvtnkdspl
      721 ppavqqgsnl sdtksdhpkv ditdliresn evcvlvdrsm lvvifrgt
//
LOCUS       XP_053931323             829 aa            linear   VRT 09-MAR-2023
DEFINITION  circadian clock protein PASD1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931323
VERSION     XP_053931323.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075348.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..829
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..829
                     /product="circadian clock protein PASD1 isoform X1"
                     /calculated_mol_wt=93489
     Region          1..70
                     /region_name="bHLH-PAS_PASD1"
                     /note="basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS)
                     domain found in circadian clock protein PASD1; cd19736"
                     /db_xref="CDD:381579"
     Site            order(11,14..15,18..19,21..22,26,46..47)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381579"
     Site            order(24..25,28..29,31..32,35..36,47..48,51..52,55,58..59,
                     61)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381579"
     Region          86..147
                     /region_name="PAS"
                     /note="PAS domain; smart00091"
                     /db_xref="CDD:214512"
     Region          251..354
                     /region_name="PAS_11"
                     /note="PAS domain; pfam14598"
                     /db_xref="CDD:464214"
     CDS             1..829
                     /gene="PASD1"
                     /coded_by="XM_054075348.1:286..2775"
                     /db_xref="GeneID:104064023"
ORIGIN      
        1 mdedekdrak rasrnksekk rrdqfnvlik elctmlqghg hplkmdksti lqrtidflqk
       61 qkeitaqtea ceirqdwkps flsneeftql mlealdgfli alttdgiiiy vsdsvssllg
      121 hlpsdlvdqn ilnflpereq sevykllsph vlmtdpiaad flnaekqief cchlargsld
      181 pneplmyeyv kfvvdfkyft hvptpscngf esaiarafrs ateeqiclva tvrlvtpqfl
      241 kelcnveepc eeftsrhsle wkflfldhra ppiigylpfe vlgtsgydyy haddlellar
      301 chehlmqfgk gkscyyrflt kgqqwiwlqt hyyityhqwn skpefivcth lvvsyaevra
      361 errrdlglee ssielasssl kshssfldvg qcgssqdasr egvslsshss rrsshtalsd
      421 sastssmrht dtstptrppv pgaqvekaal rlasaasaqa iatpqapgeh lpqhpvaqpa
      481 vpsqhtvmpv yhfptqlgmm hqlkeqleer trilqadikt qqeelhvike qlqlvqdsnl
      541 qmlmqqpipi vfnnvqqpsp rrpppgtprq ttakksqqgl mgtkrycgth lpsprqflrd
      601 pcgtatqvqq qhstrgnqaq qtclpgqtsi svplynnpmv fsqthpitvt aqmptdsser
      661 qpqsdysqdr slrmlldqsi qammptanss gqstpnsasr qqgkfvaeqq ilptptqmqp
      721 itcsavrppa pspvfspslm iphtsftshq antpvhlhqw pqqqlqqhrl ylqmqgpepv
      781 pggptqrifq pphtpqqnpl syflhpqqqs rhvqgqacnl pdlpemqlp
//
LOCUS       XP_053931324             829 aa            linear   VRT 09-MAR-2023
DEFINITION  circadian clock protein PASD1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931324
VERSION     XP_053931324.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075349.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..829
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..829
                     /product="circadian clock protein PASD1 isoform X1"
                     /calculated_mol_wt=93489
     Region          1..70
                     /region_name="bHLH-PAS_PASD1"
                     /note="basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS)
                     domain found in circadian clock protein PASD1; cd19736"
                     /db_xref="CDD:381579"
     Site            order(11,14..15,18..19,21..22,26,46..47)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381579"
     Site            order(24..25,28..29,31..32,35..36,47..48,51..52,55,58..59,
                     61)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381579"
     Region          86..147
                     /region_name="PAS"
                     /note="PAS domain; smart00091"
                     /db_xref="CDD:214512"
     Region          251..354
                     /region_name="PAS_11"
                     /note="PAS domain; pfam14598"
                     /db_xref="CDD:464214"
     CDS             1..829
                     /gene="PASD1"
                     /coded_by="XM_054075349.1:251..2740"
                     /db_xref="GeneID:104064023"
ORIGIN      
        1 mdedekdrak rasrnksekk rrdqfnvlik elctmlqghg hplkmdksti lqrtidflqk
       61 qkeitaqtea ceirqdwkps flsneeftql mlealdgfli alttdgiiiy vsdsvssllg
      121 hlpsdlvdqn ilnflpereq sevykllsph vlmtdpiaad flnaekqief cchlargsld
      181 pneplmyeyv kfvvdfkyft hvptpscngf esaiarafrs ateeqiclva tvrlvtpqfl
      241 kelcnveepc eeftsrhsle wkflfldhra ppiigylpfe vlgtsgydyy haddlellar
      301 chehlmqfgk gkscyyrflt kgqqwiwlqt hyyityhqwn skpefivcth lvvsyaevra
      361 errrdlglee ssielasssl kshssfldvg qcgssqdasr egvslsshss rrsshtalsd
      421 sastssmrht dtstptrppv pgaqvekaal rlasaasaqa iatpqapgeh lpqhpvaqpa
      481 vpsqhtvmpv yhfptqlgmm hqlkeqleer trilqadikt qqeelhvike qlqlvqdsnl
      541 qmlmqqpipi vfnnvqqpsp rrpppgtprq ttakksqqgl mgtkrycgth lpsprqflrd
      601 pcgtatqvqq qhstrgnqaq qtclpgqtsi svplynnpmv fsqthpitvt aqmptdsser
      661 qpqsdysqdr slrmlldqsi qammptanss gqstpnsasr qqgkfvaeqq ilptptqmqp
      721 itcsavrppa pspvfspslm iphtsftshq antpvhlhqw pqqqlqqhrl ylqmqgpepv
      781 pggptqrifq pphtpqqnpl syflhpqqqs rhvqgqacnl pdlpemqlp
//
LOCUS       XP_053931325             829 aa            linear   VRT 09-MAR-2023
DEFINITION  circadian clock protein PASD1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931325
VERSION     XP_053931325.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075350.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..829
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..829
                     /product="circadian clock protein PASD1 isoform X1"
                     /calculated_mol_wt=93489
     Region          1..70
                     /region_name="bHLH-PAS_PASD1"
                     /note="basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS)
                     domain found in circadian clock protein PASD1; cd19736"
                     /db_xref="CDD:381579"
     Site            order(11,14..15,18..19,21..22,26,46..47)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381579"
     Site            order(24..25,28..29,31..32,35..36,47..48,51..52,55,58..59,
                     61)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381579"
     Region          86..147
                     /region_name="PAS"
                     /note="PAS domain; smart00091"
                     /db_xref="CDD:214512"
     Region          251..354
                     /region_name="PAS_11"
                     /note="PAS domain; pfam14598"
                     /db_xref="CDD:464214"
     CDS             1..829
                     /gene="PASD1"
                     /coded_by="XM_054075350.1:141..2630"
                     /db_xref="GeneID:104064023"
ORIGIN      
        1 mdedekdrak rasrnksekk rrdqfnvlik elctmlqghg hplkmdksti lqrtidflqk
       61 qkeitaqtea ceirqdwkps flsneeftql mlealdgfli alttdgiiiy vsdsvssllg
      121 hlpsdlvdqn ilnflpereq sevykllsph vlmtdpiaad flnaekqief cchlargsld
      181 pneplmyeyv kfvvdfkyft hvptpscngf esaiarafrs ateeqiclva tvrlvtpqfl
      241 kelcnveepc eeftsrhsle wkflfldhra ppiigylpfe vlgtsgydyy haddlellar
      301 chehlmqfgk gkscyyrflt kgqqwiwlqt hyyityhqwn skpefivcth lvvsyaevra
      361 errrdlglee ssielasssl kshssfldvg qcgssqdasr egvslsshss rrsshtalsd
      421 sastssmrht dtstptrppv pgaqvekaal rlasaasaqa iatpqapgeh lpqhpvaqpa
      481 vpsqhtvmpv yhfptqlgmm hqlkeqleer trilqadikt qqeelhvike qlqlvqdsnl
      541 qmlmqqpipi vfnnvqqpsp rrpppgtprq ttakksqqgl mgtkrycgth lpsprqflrd
      601 pcgtatqvqq qhstrgnqaq qtclpgqtsi svplynnpmv fsqthpitvt aqmptdsser
      661 qpqsdysqdr slrmlldqsi qammptanss gqstpnsasr qqgkfvaeqq ilptptqmqp
      721 itcsavrppa pspvfspslm iphtsftshq antpvhlhqw pqqqlqqhrl ylqmqgpepv
      781 pggptqrifq pphtpqqnpl syflhpqqqs rhvqgqacnl pdlpemqlp
//
LOCUS       XP_053931327             829 aa            linear   VRT 09-MAR-2023
DEFINITION  circadian clock protein PASD1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931327
VERSION     XP_053931327.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075352.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..829
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..829
                     /product="circadian clock protein PASD1 isoform X1"
                     /calculated_mol_wt=93489
     Region          1..70
                     /region_name="bHLH-PAS_PASD1"
                     /note="basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS)
                     domain found in circadian clock protein PASD1; cd19736"
                     /db_xref="CDD:381579"
     Site            order(11,14..15,18..19,21..22,26,46..47)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381579"
     Site            order(24..25,28..29,31..32,35..36,47..48,51..52,55,58..59,
                     61)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381579"
     Region          86..147
                     /region_name="PAS"
                     /note="PAS domain; smart00091"
                     /db_xref="CDD:214512"
     Region          251..354
                     /region_name="PAS_11"
                     /note="PAS domain; pfam14598"
                     /db_xref="CDD:464214"
     CDS             1..829
                     /gene="PASD1"
                     /coded_by="XM_054075352.1:143..2632"
                     /db_xref="GeneID:104064023"
ORIGIN      
        1 mdedekdrak rasrnksekk rrdqfnvlik elctmlqghg hplkmdksti lqrtidflqk
       61 qkeitaqtea ceirqdwkps flsneeftql mlealdgfli alttdgiiiy vsdsvssllg
      121 hlpsdlvdqn ilnflpereq sevykllsph vlmtdpiaad flnaekqief cchlargsld
      181 pneplmyeyv kfvvdfkyft hvptpscngf esaiarafrs ateeqiclva tvrlvtpqfl
      241 kelcnveepc eeftsrhsle wkflfldhra ppiigylpfe vlgtsgydyy haddlellar
      301 chehlmqfgk gkscyyrflt kgqqwiwlqt hyyityhqwn skpefivcth lvvsyaevra
      361 errrdlglee ssielasssl kshssfldvg qcgssqdasr egvslsshss rrsshtalsd
      421 sastssmrht dtstptrppv pgaqvekaal rlasaasaqa iatpqapgeh lpqhpvaqpa
      481 vpsqhtvmpv yhfptqlgmm hqlkeqleer trilqadikt qqeelhvike qlqlvqdsnl
      541 qmlmqqpipi vfnnvqqpsp rrpppgtprq ttakksqqgl mgtkrycgth lpsprqflrd
      601 pcgtatqvqq qhstrgnqaq qtclpgqtsi svplynnpmv fsqthpitvt aqmptdsser
      661 qpqsdysqdr slrmlldqsi qammptanss gqstpnsasr qqgkfvaeqq ilptptqmqp
      721 itcsavrppa pspvfspslm iphtsftshq antpvhlhqw pqqqlqqhrl ylqmqgpepv
      781 pggptqrifq pphtpqqnpl syflhpqqqs rhvqgqacnl pdlpemqlp
//
LOCUS       XP_053931328             829 aa            linear   VRT 09-MAR-2023
DEFINITION  circadian clock protein PASD1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931328
VERSION     XP_053931328.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075353.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..829
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..829
                     /product="circadian clock protein PASD1 isoform X1"
                     /calculated_mol_wt=93489
     Region          1..70
                     /region_name="bHLH-PAS_PASD1"
                     /note="basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS)
                     domain found in circadian clock protein PASD1; cd19736"
                     /db_xref="CDD:381579"
     Site            order(11,14..15,18..19,21..22,26,46..47)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381579"
     Site            order(24..25,28..29,31..32,35..36,47..48,51..52,55,58..59,
                     61)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381579"
     Region          86..147
                     /region_name="PAS"
                     /note="PAS domain; smart00091"
                     /db_xref="CDD:214512"
     Region          251..354
                     /region_name="PAS_11"
                     /note="PAS domain; pfam14598"
                     /db_xref="CDD:464214"
     CDS             1..829
                     /gene="PASD1"
                     /coded_by="XM_054075353.1:138..2627"
                     /db_xref="GeneID:104064023"
ORIGIN      
        1 mdedekdrak rasrnksekk rrdqfnvlik elctmlqghg hplkmdksti lqrtidflqk
       61 qkeitaqtea ceirqdwkps flsneeftql mlealdgfli alttdgiiiy vsdsvssllg
      121 hlpsdlvdqn ilnflpereq sevykllsph vlmtdpiaad flnaekqief cchlargsld
      181 pneplmyeyv kfvvdfkyft hvptpscngf esaiarafrs ateeqiclva tvrlvtpqfl
      241 kelcnveepc eeftsrhsle wkflfldhra ppiigylpfe vlgtsgydyy haddlellar
      301 chehlmqfgk gkscyyrflt kgqqwiwlqt hyyityhqwn skpefivcth lvvsyaevra
      361 errrdlglee ssielasssl kshssfldvg qcgssqdasr egvslsshss rrsshtalsd
      421 sastssmrht dtstptrppv pgaqvekaal rlasaasaqa iatpqapgeh lpqhpvaqpa
      481 vpsqhtvmpv yhfptqlgmm hqlkeqleer trilqadikt qqeelhvike qlqlvqdsnl
      541 qmlmqqpipi vfnnvqqpsp rrpppgtprq ttakksqqgl mgtkrycgth lpsprqflrd
      601 pcgtatqvqq qhstrgnqaq qtclpgqtsi svplynnpmv fsqthpitvt aqmptdsser
      661 qpqsdysqdr slrmlldqsi qammptanss gqstpnsasr qqgkfvaeqq ilptptqmqp
      721 itcsavrppa pspvfspslm iphtsftshq antpvhlhqw pqqqlqqhrl ylqmqgpepv
      781 pggptqrifq pphtpqqnpl syflhpqqqs rhvqgqacnl pdlpemqlp
//
LOCUS       XP_053931329             828 aa            linear   VRT 09-MAR-2023
DEFINITION  circadian clock protein PASD1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931329
VERSION     XP_053931329.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075354.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..828
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..828
                     /product="circadian clock protein PASD1 isoform X2"
                     /calculated_mol_wt=93418
     Region          1..70
                     /region_name="bHLH-PAS_PASD1"
                     /note="basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS)
                     domain found in circadian clock protein PASD1; cd19736"
                     /db_xref="CDD:381579"
     Site            order(11,14..15,18..19,21..22,26,46..47)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381579"
     Site            order(24..25,28..29,31..32,35..36,47..48,51..52,55,58..59,
                     61)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381579"
     Region          86..147
                     /region_name="PAS"
                     /note="PAS domain; smart00091"
                     /db_xref="CDD:214512"
     Region          250..353
                     /region_name="PAS_11"
                     /note="PAS domain; pfam14598"
                     /db_xref="CDD:464214"
     CDS             1..828
                     /gene="PASD1"
                     /coded_by="XM_054075354.1:286..2772"
                     /db_xref="GeneID:104064023"
ORIGIN      
        1 mdedekdrak rasrnksekk rrdqfnvlik elctmlqghg hplkmdksti lqrtidflqk
       61 qkeitaqtea ceirqdwkps flsneeftql mlealdgfli alttdgiiiy vsdsvssllg
      121 hlpsdlvdqn ilnflpereq sevykllsph vlmtdpiaad flnekqiefc chlargsldp
      181 neplmyeyvk fvvdfkyfth vptpscngfe saiarafrsa teeqiclvat vrlvtpqflk
      241 elcnveepce eftsrhslew kflfldhrap piigylpfev lgtsgydyyh addlellarc
      301 hehlmqfgkg kscyyrfltk gqqwiwlqth yyityhqwns kpefivcthl vvsyaevrae
      361 rrrdlglees sielassslk shssfldvgq cgssqdasre gvslsshssr rsshtalsds
      421 astssmrhtd tstptrppvp gaqvekaalr lasaasaqai atpqapgehl pqhpvaqpav
      481 psqhtvmpvy hfptqlgmmh qlkeqleert rilqadiktq qeelhvikeq lqlvqdsnlq
      541 mlmqqpipiv fnnvqqpspr rpppgtprqt takksqqglm gtkrycgthl psprqflrdp
      601 cgtatqvqqq hstrgnqaqq tclpgqtsis vplynnpmvf sqthpitvta qmptdsserq
      661 pqsdysqdrs lrmlldqsiq ammptanssg qstpnsasrq qgkfvaeqqi lptptqmqpi
      721 tcsavrppap spvfspslmi phtsftshqa ntpvhlhqwp qqqlqqhrly lqmqgpepvp
      781 ggptqrifqp phtpqqnpls yflhpqqqsr hvqgqacnlp dlpemqlp
//
LOCUS       XP_053931330             800 aa            linear   VRT 09-MAR-2023
DEFINITION  circadian clock protein PASD1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931330
VERSION     XP_053931330.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075355.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..800
                     /product="circadian clock protein PASD1 isoform X3"
                     /calculated_mol_wt=90497
     Region          1..70
                     /region_name="bHLH-PAS_PASD1"
                     /note="basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS)
                     domain found in circadian clock protein PASD1; cd19736"
                     /db_xref="CDD:381579"
     Site            order(11,14..15,18..19,21..22,26,46..47)
                     /site_type="other"
                     /note="putative DNA binding site [nucleotide binding]"
                     /db_xref="CDD:381579"
     Site            order(24..25,28..29,31..32,35..36,47..48,51..52,55,58..59,
                     61)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:381579"
     Region          86..>147
                     /region_name="PAS"
                     /note="PAS fold; pfam00989"
                     /db_xref="CDD:395786"
     Region          251..354
                     /region_name="PAS_11"
                     /note="PAS domain; pfam14598"
                     /db_xref="CDD:464214"
     CDS             1..800
                     /gene="PASD1"
                     /coded_by="XM_054075355.1:286..2688"
                     /db_xref="GeneID:104064023"
ORIGIN      
        1 mdedekdrak rasrnksekk rrdqfnvlik elctmlqghg hplkmdksti lqrtidflqk
       61 qkeitaqtea ceirqdwkps flsneeftql mlealdgfli alttdgiiiy vsdsvssllg
      121 hlpsdlvdqn ilnflpereq sevykllsph vlmtdpiaad flnaekqief cchlargsld
      181 pneplmyeyv kfvvdfkyft hvptpscngf esaiarafrs ateeqiclva tvrlvtpqfl
      241 kelcnveepc eeftsrhsle wkflfldhra ppiigylpfe vlgtsgydyy haddlellar
      301 chehlmqfgk gkscyyrflt kgqqwiwlqt hyyityhqwn skpefivcth lvvsyaevra
      361 errrdlglee ssielasssl kshssfldvg qcgssqdasr egvslsshss rrsshtalsd
      421 sastssmrht dtstptrppv pgaqvekaal rlasaasaqp vyhfptqlgm mhqlkeqlee
      481 rtrilqadik tqqeelhvik eqlqlvqdsn lqmlmqqpip ivfnnvqqps prrpppgtpr
      541 qttakksqqg lmgtkrycgt hlpsprqflr dpcgtatqvq qqhstrgnqa qqtclpgqts
      601 isvplynnpm vfsqthpitv taqmptdsse rqpqsdysqd rslrmlldqs iqammptans
      661 sgqstpnsas rqqgkfvaeq qilptptqmq pitcsavrpp apspvfspsl miphtsftsh
      721 qantpvhlhq wpqqqlqqhr lylqmqgpep vpggptqrif qpphtpqqnp lsyflhpqqq
      781 srhvqgqacn lpdlpemqlp
//
LOCUS       XP_053931331             677 aa            linear   VRT 09-MAR-2023
DEFINITION  circadian clock protein PASD1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931331
VERSION     XP_053931331.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075356.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..677
                     /product="circadian clock protein PASD1 isoform X4"
                     /calculated_mol_wt=75961
     Region          99..202
                     /region_name="PAS_11"
                     /note="PAS domain; pfam14598"
                     /db_xref="CDD:464214"
     CDS             1..677
                     /gene="PASD1"
                     /coded_by="XM_054075356.1:223..2256"
                     /db_xref="GeneID:104064023"
ORIGIN      
        1 mtdpiaadfl naekqiefcc hlargsldpn eplmyeyvkf vvdfkyfthv ptpscngfes
       61 aiarafrsat eeqiclvatv rlvtpqflke lcnveepcee ftsrhslewk flfldhrapp
      121 iigylpfevl gtsgydyyha ddlellarch ehlmqfgkgk scyyrfltkg qqwiwlqthy
      181 yityhqwnsk pefivcthlv vsyaevraer rrdlgleess ielassslks hssfldvgqc
      241 gssqdasreg vslsshssrr sshtalsdsa stssmrhtdt stptrppvpg aqvekaalrl
      301 asaasaqaia tpqapgehlp qhpvaqpavp sqhtvmpvyh fptqlgmmhq lkeqleertr
      361 ilqadiktqq eelhvikeql qlvqdsnlqm lmqqpipivf nnvqqpsprr pppgtprqtt
      421 akksqqglmg tkrycgthlp sprqflrdpc gtatqvqqqh strgnqaqqt clpgqtsisv
      481 plynnpmvfs qthpitvtaq mptdsserqp qsdysqdrsl rmlldqsiqa mmptanssgq
      541 stpnsasrqq gkfvaeqqil ptptqmqpit csavrppaps pvfspslmip htsftshqan
      601 tpvhlhqwpq qqlqqhrlyl qmqgpepvpg gptqrifqpp htpqqnplsy flhpqqqsrh
      661 vqgqacnlpd lpemqlp
//
LOCUS       XP_053931332            2110 aa            linear   VRT 09-MAR-2023
DEFINITION  dedicator of cytokinesis protein 11 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931332
VERSION     XP_053931332.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075357.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2110
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2110
                     /product="dedicator of cytokinesis protein 11 isoform X1"
                     /calculated_mol_wt=241031
     Region          37..147
                     /region_name="DOCK_C-D_N"
                     /note="Dedicator of cytokinesis C/D, N terminal;
                     pfam11878"
                     /db_xref="CDD:463380"
     Region          161..283
                     /region_name="PH_DOCK-D"
                     /note="Dedicator of cytokinesis-D subfamily Pleckstrin
                     homology (PH) domain; cd13267"
                     /db_xref="CDD:270087"
     Region          638..827
                     /region_name="C2_Dock-D"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; cd08697"
                     /db_xref="CDD:176079"
     Region          1651..2063
                     /region_name="DHR2_DOCK11"
                     /note="Dock Homology Region 2, a GEF domain, of Class D
                     Dedicator of Cytokinesis 11; cd11700"
                     /db_xref="CDD:212573"
     Site            order(1756,1766,1768..1769,1771..1772,1775..1776,
                     1778..1779,1782..1783)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:212573"
     Site            order(1790..1793,1824..1825,1827..1830,1832..1833,
                     1852..1854,1871,1873,1902,1904,1911..1912,1918,1920,
                     1957..1958,1961,1975,1977,1981,1984..1986,1989..1995,1998,
                     2026,2044..2045,2047..2048,2051)
                     /site_type="other"
                     /note="Cdc42 binding site [polypeptide binding]"
                     /db_xref="CDD:212573"
     Site            1989..1994
                     /site_type="other"
                     /note="nucleotide sensor"
                     /db_xref="CDD:212573"
     CDS             1..2110
                     /gene="DOCK11"
                     /coded_by="XM_054075357.1:55..6387"
                     /db_xref="GeneID:104063694"
ORIGIN      
        1 msevrkftkr lskpgtaael rqsvseavrs sfvlektkvv epldyenvll qrkvqiysdp
       61 lrdlllfpie dvsisvisrq rrtvqstvpe dalkkaqslf vkeciktyss dwhvvnykye
      121 eysgdfrmlp cksfrpdkip shvfeidedf ekdedssslc sqkggvikqg wlhkanvnst
      181 itvtmkvfkr ryfylsqltd gsyilnsykd ekiskeskgc ifldacndvv qcpkmrryaf
      241 elktidkysh ylaaeteqem eewlvtlkki iqnntesllq ekkdsvesvq ddesstqgks
      301 enileslers mhpelmkygr etdqlnklsr ndgrqnlfsf dpevqrldfs giepdakpfe
      361 ekcsrrfvvc cqdfslnlla qlndrsegap tnvepfflsl alfdlknnck isadfhvdln
      421 pssvrdmlld nsasraegtk grspgeslvy gvpesclrym krgvfsvtdp hteiflvarv
      481 ekvlqgsith caepyiknsd pgktaqkvhk vakqvcsrlg qyrmpfgwaa rpvfkdsqgt
      541 ldaegkfspl ykqdsskisn edmlkllaey kkpektklqv ipaqlnivik dipldftncv
      601 tasyipikpf ekscddiave veelvpevak ycypftvykn hlyiyplhlk yenqkmfaka
      661 rniavcvefr dsdeadarpl kciygkpggh llttnayaav lhhnqspefy deikielpih
      721 lhqkhhllft fyhvsceint katskkqdtv etqvgyawvs llkdgrivtl erhlpvssnl
      781 ppgylglgdt esrkqpsmda kwvdgakplf kirmhldsti ytqdmhlhkf fqycqvvqag
      841 akevpgelik ylkclhamei qvmiqflpvi lmqlfrvltn atqedevavn ctmvllhivs
      901 kcheegldhy lrsflkyvfr aekpsvtqak mthetlvlsm atilkqsadf lainkllkys
      961 wfffealaks mamylleenk iklprgqrfp esyqhalhsl llaiiphvti ryneipeesr
     1021 nvnfslanfl krcltfmdrg fvfnlindyi sgfspkdpkl lieykfeflq ticnhehyip
     1081 lnlpmtfskp klhrvqdffs faverftsvd inleysltde ycrhhflvgm llreasvalq
     1141 dnydirctai svlknllikh afdnryqhkn qqakiaqlyl plfglllenl qrvasrealy
     1201 scaaasspas rdefmcgfas psntssliad kdpaygaalp nghaikreds kgslssegat
     1261 gspdqgenir rsstrssvsh csrldqfeir tllmcylyiv kmisedtlla ywnkfspqel
     1321 invlvllevc lfhfryvgkr niasscmrpp apgapgcphr lavsptvgcr vhdawlskht
     1381 gadrksqtmp alrsraggmq vrlqhlgsle tsftlnhnag tseadivhqa llegniatev
     1441 cltvldtisf ftqsfktqll sneghnplmk kvfdihlafl kngqseaalk hvfaslrafi
     1501 skfpsaffkg rvnmcaalcy eilkcctskv sstrneasal lyllmrnnfe ftkrrtflrt
     1561 hlqiiiavsq liadvalsgg trfqdsllii nnfansdrpm katafpsevk dltkrirtvl
     1621 mataqmkehe kdpemlidlq yslaksyast pelrktwlds makihvkngd fseaamcyvh
     1681 vaalvaeflh rrklfpsgct afrkitpnid eegamkedgg mmdvhyseev lvelleqcid
     1741 glwkaeryet isevskliip iyekrrefek ltqlyrtlhg ayakilevmh trkrllgtff
     1801 rvafygqtff eeedgkeyiy kepkltglse isfrlvklyg ekfgsetvki iqdsnkvnvk
     1861 dldpkyahiq vtyvkpyfee keiserktef ernhninrfv fetpytlsgk khgsveeqck
     1921 krtilttlns fpyvkkripv nyehqvnlkp idvatdeikd ktaelqklcs agdvdmiqlq
     1981 lklqgcvsvq vnagplayar aflsdsqssk yptkkvnelk emfrkfiqac gialelnerl
     2041 ikedqleyhe glksnfrdmv kelsdiiheq iyhedtmhsp wmhdslhvfc aisgtsgdgs
     2101 ycslrptaei
//
LOCUS       XP_053931333            2109 aa            linear   VRT 09-MAR-2023
DEFINITION  dedicator of cytokinesis protein 11 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931333
VERSION     XP_053931333.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075358.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2109
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2109
                     /product="dedicator of cytokinesis protein 11 isoform X2"
                     /calculated_mol_wt=240903
     Region          37..147
                     /region_name="DOCK_C-D_N"
                     /note="Dedicator of cytokinesis C/D, N terminal;
                     pfam11878"
                     /db_xref="CDD:463380"
     Region          161..283
                     /region_name="PH_DOCK-D"
                     /note="Dedicator of cytokinesis-D subfamily Pleckstrin
                     homology (PH) domain; cd13267"
                     /db_xref="CDD:270087"
     Region          638..826
                     /region_name="C2_Dock-D"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; cd08697"
                     /db_xref="CDD:176079"
     Region          1650..2062
                     /region_name="DHR2_DOCK11"
                     /note="Dock Homology Region 2, a GEF domain, of Class D
                     Dedicator of Cytokinesis 11; cd11700"
                     /db_xref="CDD:212573"
     Site            order(1755,1765,1767..1768,1770..1771,1774..1775,
                     1777..1778,1781..1782)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:212573"
     Site            order(1789..1792,1823..1824,1826..1829,1831..1832,
                     1851..1853,1870,1872,1901,1903,1910..1911,1917,1919,
                     1956..1957,1960,1974,1976,1980,1983..1985,1988..1994,1997,
                     2025,2043..2044,2046..2047,2050)
                     /site_type="other"
                     /note="Cdc42 binding site [polypeptide binding]"
                     /db_xref="CDD:212573"
     Site            1988..1993
                     /site_type="other"
                     /note="nucleotide sensor"
                     /db_xref="CDD:212573"
     CDS             1..2109
                     /gene="DOCK11"
                     /coded_by="XM_054075358.1:55..6384"
                     /db_xref="GeneID:104063694"
ORIGIN      
        1 msevrkftkr lskpgtaael rqsvseavrs sfvlektkvv epldyenvll qrkvqiysdp
       61 lrdlllfpie dvsisvisrq rrtvqstvpe dalkkaqslf vkeciktyss dwhvvnykye
      121 eysgdfrmlp cksfrpdkip shvfeidedf ekdedssslc sqkggvikqg wlhkanvnst
      181 itvtmkvfkr ryfylsqltd gsyilnsykd ekiskeskgc ifldacndvv qcpkmrryaf
      241 elktidkysh ylaaeteqem eewlvtlkki iqnntesllq ekkdsvesvq ddesstqgks
      301 enileslers mhpelmkygr etdqlnklsr ndgrqnlfsf dpevqrldfs giepdakpfe
      361 ekcsrrfvvc cqdfslnlla qlndrsegap tnvepfflsl alfdlknnck isadfhvdln
      421 pssvrdmlld nsasraegtk grspgeslvy gvpesclrym krgvfsvtdp hteiflvarv
      481 ekvlqgsith caepyiknsd pgktaqkvhk vakqvcsrlg qyrmpfgwaa rpvfkdsqgt
      541 ldaegkfspl ykqdsskisn edmlkllaey kkpektklqv ipaqlnivik dipldftncv
      601 tasyipikpf ekscddiave veelvpevak ycypftvykn hlyiyplhlk yenqkmfaka
      661 rniavcvefr dsdeadarpl kciygkpggh llttnayaav lhhnqspefy deikielpih
      721 lhqkhhllft fyhvsceint katskkqdtv etqvgyawvs llkdgrivtl erhlpvssnl
      781 ppgylglgdt esrkpsmdak wvdgakplfk irmhldstiy tqdmhlhkff qycqvvqaga
      841 kevpgeliky lkclhameiq vmiqflpvil mqlfrvltna tqedevavnc tmvllhivsk
      901 cheegldhyl rsflkyvfra ekpsvtqakm thetlvlsma tilkqsadfl ainkllkysw
      961 fffealaksm amylleenki klprgqrfpe syqhalhsll laiiphvtir yneipeesrn
     1021 vnfslanflk rcltfmdrgf vfnlindyis gfspkdpkll ieykfeflqt icnhehyipl
     1081 nlpmtfskpk lhrvqdffsf averftsvdi nleysltdey crhhflvgml lreasvalqd
     1141 nydirctais vlknllikha fdnryqhknq qakiaqlylp lfglllenlq rvasrealys
     1201 caaasspasr defmcgfasp sntssliadk dpaygaalpn ghaikredsk gslssegatg
     1261 spdqgenirr sstrssvshc srldqfeirt llmcylyivk misedtllay wnkfspqeli
     1321 nvlvllevcl fhfryvgkrn iasscmrppa pgapgcphrl avsptvgcrv hdawlskhtg
     1381 adrksqtmpa lrsraggmqv rlqhlgslet sftlnhnagt seadivhqal legniatevc
     1441 ltvldtisff tqsfktqlls neghnplmkk vfdihlaflk ngqseaalkh vfaslrafis
     1501 kfpsaffkgr vnmcaalcye ilkcctskvs strneasall yllmrnnfef tkrrtflrth
     1561 lqiiiavsql iadvalsggt rfqdslliin nfansdrpmk atafpsevkd ltkrirtvlm
     1621 ataqmkehek dpemlidlqy slaksyastp elrktwldsm akihvkngdf seaamcyvhv
     1681 aalvaeflhr rklfpsgcta frkitpnide egamkedggm mdvhyseevl velleqcidg
     1741 lwkaeryeti sevskliipi yekrrefekl tqlyrtlhga yakilevmht rkrllgtffr
     1801 vafygqtffe eedgkeyiyk epkltglsei sfrlvklyge kfgsetvkii qdsnkvnvkd
     1861 ldpkyahiqv tyvkpyfeek eiserktefe rnhninrfvf etpytlsgkk hgsveeqckk
     1921 rtilttlnsf pyvkkripvn yehqvnlkpi dvatdeikdk taelqklcsa gdvdmiqlql
     1981 klqgcvsvqv nagplayara flsdsqssky ptkkvnelke mfrkfiqacg ialelnerli
     2041 kedqleyheg lksnfrdmvk elsdiiheqi yhedtmhspw mhdslhvfca isgtsgdgsy
     2101 cslrptaei
//
LOCUS       XP_053931334            2109 aa            linear   VRT 09-MAR-2023
DEFINITION  dedicator of cytokinesis protein 11 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931334
VERSION     XP_053931334.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075359.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2109
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2109
                     /product="dedicator of cytokinesis protein 11 isoform X3"
                     /calculated_mol_wt=240903
     Region          37..147
                     /region_name="DOCK_C-D_N"
                     /note="Dedicator of cytokinesis C/D, N terminal;
                     pfam11878"
                     /db_xref="CDD:463380"
     Region          161..283
                     /region_name="PH_DOCK-D"
                     /note="Dedicator of cytokinesis-D subfamily Pleckstrin
                     homology (PH) domain; cd13267"
                     /db_xref="CDD:270087"
     Region          638..827
                     /region_name="C2_Dock-D"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; cd08697"
                     /db_xref="CDD:176079"
     Region          1651..2062
                     /region_name="DHR2_DOCK11"
                     /note="Dock Homology Region 2, a GEF domain, of Class D
                     Dedicator of Cytokinesis 11; cd11700"
                     /db_xref="CDD:212573"
     Site            order(1756,1766,1768..1769,1770..1771,1774..1775,
                     1777..1778,1781..1782)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:212573"
     Site            order(1789..1792,1823..1824,1826..1829,1831..1832,
                     1851..1853,1870,1872,1901,1903,1910..1911,1917,1919,
                     1956..1957,1960,1974,1976,1980,1983..1985,1988..1994,1997,
                     2025,2043..2044,2046..2047,2050)
                     /site_type="other"
                     /note="Cdc42 binding site [polypeptide binding]"
                     /db_xref="CDD:212573"
     Site            1988..1993
                     /site_type="other"
                     /note="nucleotide sensor"
                     /db_xref="CDD:212573"
     CDS             1..2109
                     /gene="DOCK11"
                     /coded_by="XM_054075359.1:55..6384"
                     /db_xref="GeneID:104063694"
ORIGIN      
        1 msevrkftkr lskpgtaael rqsvseavrs sfvlektkvv epldyenvll qrkvqiysdp
       61 lrdlllfpie dvsisvisrq rrtvqstvpe dalkkaqslf vkeciktyss dwhvvnykye
      121 eysgdfrmlp cksfrpdkip shvfeidedf ekdedssslc sqkggvikqg wlhkanvnst
      181 itvtmkvfkr ryfylsqltd gsyilnsykd ekiskeskgc ifldacndvv qcpkmrryaf
      241 elktidkysh ylaaeteqem eewlvtlkki iqnntesllq ekkdsvesvq ddesstqgks
      301 enileslers mhpelmkygr etdqlnklsr ndgrqnlfsf dpevqrldfs giepdakpfe
      361 ekcsrrfvvc cqdfslnlla qlndrsegap tnvepfflsl alfdlknnck isadfhvdln
      421 pssvrdmlld nsasraegtk grspgeslvy gvpesclrym krgvfsvtdp hteiflvarv
      481 ekvlqgsith caepyiknsd pgktaqkvhk vakqvcsrlg qyrmpfgwaa rpvfkdsqgt
      541 ldaegkfspl ykqdsskisn edmlkllaey kkpektklqv ipaqlnivik dipldftncv
      601 tasyipikpf ekscddiave veelvpevak ycypftvykn hlyiyplhlk yenqkmfaka
      661 rniavcvefr dsdeadarpl kciygkpggh llttnayaav lhhnqspefy deikielpih
      721 lhqkhhllft fyhvsceint katskkqdtv etqvgyawvs llkdgrivtl erhlpvssnl
      781 ppgylglgdt esrkqpsmda kwvdgakplf kirmhldsti ytqdmhlhkf fqycqvvqag
      841 akevpgelik ylkclhamei qvmiqflpvi lmqlfrvltn atqedevavn ctmvllhivs
      901 kcheegldhy lrsflkyvfr aekpsvtqak mthetlvlsm atilkqsadf lainkllkys
      961 wfffealaks mamylleenk iklprgqrfp esyqhalhsl llaiiphvti ryneipeesr
     1021 nvnfslanfl krcltfmdrg fvfnlindyi sgfspkdpkl lieykfeflq ticnhehyip
     1081 lnlpmtfskp klhrvqdffs faverftsvd inleysltde ycrhhflvgm llreasvalq
     1141 dnydirctai svlknllikh afdnryqhkn qqakiaqlyl plfglllenl qrvasrealy
     1201 scaaasspas rdefmcgfas psntssliad kdpaygaalp nghaikreds kgslssegat
     1261 gspdqgenir rsstrssvsh csrldqfeir tllmcylyiv kmisedtlla ywnkfspqel
     1321 invlvllevc lfhfryvgkr niasscmrpp apgapgcphr lavsptvgcr vhdawlskht
     1381 gadrksqtmp alrsraggmq vrlqhlgsle tsftlnhnag tseadivhqa llegniatev
     1441 cltvldtisf ftqsfktqll sneghnplmk kvfdihlafl kngqseaalk hvfaslrafi
     1501 skfpsaffkg rvnmcaalcy eilkcctskv sstrneasal lyllmrnnfe ftkrrtflrt
     1561 hlqiiiavsq liadvalsgg trfqdsllii nnfansdrpm katafpsevk dltkrirtvl
     1621 mataqmkehe kdpemlidlq yslaksyast pelrktwlds makihvkngd fseaamcyvh
     1681 vaalvaeflh rrklfpsgct afrkitpnid eegamkedgg mmdvhyseev lvelleqcid
     1741 glwkaeryet isevskliip iyekrrefel tqlyrtlhga yakilevmht rkrllgtffr
     1801 vafygqtffe eedgkeyiyk epkltglsei sfrlvklyge kfgsetvkii qdsnkvnvkd
     1861 ldpkyahiqv tyvkpyfeek eiserktefe rnhninrfvf etpytlsgkk hgsveeqckk
     1921 rtilttlnsf pyvkkripvn yehqvnlkpi dvatdeikdk taelqklcsa gdvdmiqlql
     1981 klqgcvsvqv nagplayara flsdsqssky ptkkvnelke mfrkfiqacg ialelnerli
     2041 kedqleyheg lksnfrdmvk elsdiiheqi yhedtmhspw mhdslhvfca isgtsgdgsy
     2101 cslrptaei
//
LOCUS       XP_053931335            2097 aa            linear   VRT 09-MAR-2023
DEFINITION  dedicator of cytokinesis protein 11 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931335
VERSION     XP_053931335.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075360.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2097
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2097
                     /product="dedicator of cytokinesis protein 11 isoform X4"
                     /calculated_mol_wt=239498
     Region          37..147
                     /region_name="DOCK_C-D_N"
                     /note="Dedicator of cytokinesis C/D, N terminal;
                     pfam11878"
                     /db_xref="CDD:463380"
     Region          161..283
                     /region_name="PH_DOCK-D"
                     /note="Dedicator of cytokinesis-D subfamily Pleckstrin
                     homology (PH) domain; cd13267"
                     /db_xref="CDD:270087"
     Region          638..827
                     /region_name="C2_Dock-D"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; cd08697"
                     /db_xref="CDD:176079"
     Region          1638..2050
                     /region_name="DHR2_DOCK11"
                     /note="Dock Homology Region 2, a GEF domain, of Class D
                     Dedicator of Cytokinesis 11; cd11700"
                     /db_xref="CDD:212573"
     Site            order(1743,1753,1755..1756,1758..1759,1762..1763,
                     1765..1766,1769..1770)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:212573"
     Site            order(1777..1780,1811..1812,1814..1817,1819..1820,
                     1839..1841,1858,1860,1889,1891,1898..1899,1905,1907,
                     1944..1945,1948,1962,1964,1968,1971..1973,1976..1982,1985,
                     2013,2031..2032,2034..2035,2038)
                     /site_type="other"
                     /note="Cdc42 binding site [polypeptide binding]"
                     /db_xref="CDD:212573"
     Site            1976..1981
                     /site_type="other"
                     /note="nucleotide sensor"
                     /db_xref="CDD:212573"
     CDS             1..2097
                     /gene="DOCK11"
                     /coded_by="XM_054075360.1:55..6348"
                     /db_xref="GeneID:104063694"
ORIGIN      
        1 msevrkftkr lskpgtaael rqsvseavrs sfvlektkvv epldyenvll qrkvqiysdp
       61 lrdlllfpie dvsisvisrq rrtvqstvpe dalkkaqslf vkeciktyss dwhvvnykye
      121 eysgdfrmlp cksfrpdkip shvfeidedf ekdedssslc sqkggvikqg wlhkanvnst
      181 itvtmkvfkr ryfylsqltd gsyilnsykd ekiskeskgc ifldacndvv qcpkmrryaf
      241 elktidkysh ylaaeteqem eewlvtlkki iqnntesllq ekkdsvesvq ddesstqgks
      301 enileslers mhpelmkygr etdqlnklsr ndgrqnlfsf dpevqrldfs giepdakpfe
      361 ekcsrrfvvc cqdfslnlla qlndrsegap tnvepfflsl alfdlknnck isadfhvdln
      421 pssvrdmlld nsasraegtk grspgeslvy gvpesclrym krgvfsvtdp hteiflvarv
      481 ekvlqgsith caepyiknsd pgktaqkvhk vakqvcsrlg qyrmpfgwaa rpvfkdsqgt
      541 ldaegkfspl ykqdsskisn edmlkllaey kkpektklqv ipaqlnivik dipldftncv
      601 tasyipikpf ekscddiave veelvpevak ycypftvykn hlyiyplhlk yenqkmfaka
      661 rniavcvefr dsdeadarpl kciygkpggh llttnayaav lhhnqspefy deikielpih
      721 lhqkhhllft fyhvsceint katskkqdtv etqvgyawvs llkdgrivtl erhlpvssnl
      781 ppgylglgdt esrkqpsmda kwvdgakplf kirmhldsti ytqdmhlhkf fqycqvvqag
      841 akevpgelik ylkclhamei qvmiqflpvi lmqlfrvltn atqedevavn ctmvllhivs
      901 kcheegldhy lrsflkyvfr aekpsvtqak mthetlvlsm atilkqsadf lainkllkys
      961 wfffealaks mamylleenk iklprgqrfp esyqhalhsl llaiiphvti ryneipeesr
     1021 nvnfslanfl krcltfmdrg fvfnlindyi sgfspkdpkl lieykfeflq ticnhehyip
     1081 lnlpmtfskp klhrvqdinl eysltdeycr hhflvgmllr easvalqdny dirctaisvl
     1141 knllikhafd nryqhknqqa kiaqlylplf glllenlqrv asrealysca aasspasrde
     1201 fmcgfaspsn tssliadkdp aygaalpngh aikredskgs lssegatgsp dqgenirrss
     1261 trssvshcsr ldqfeirtll mcylyivkmi sedtllaywn kfspqelinv lvllevclfh
     1321 fryvgkrnia sscmrppapg apgcphrlav sptvgcrvhd awlskhtgad rksqtmpalr
     1381 sraggmqvrl qhlgsletsf tlnhnagtse adivhqalle gniatevclt vldtisfftq
     1441 sfktqllsne ghnplmkkvf dihlaflkng qseaalkhvf aslrafiskf psaffkgrvn
     1501 mcaalcyeil kcctskvsst rneasallyl lmrnnfeftk rrtflrthlq iiiavsqlia
     1561 dvalsggtrf qdslliinnf ansdrpmkat afpsevkdlt krirtvlmat aqmkehekdp
     1621 emlidlqysl aksyastpel rktwldsmak ihvkngdfse aamcyvhvaa lvaeflhrrk
     1681 lfpsgctafr kitpnideeg amkedggmmd vhyseevlve lleqcidglw kaeryetise
     1741 vskliipiye krrefekltq lyrtlhgaya kilevmhtrk rllgtffrva fygqtffeee
     1801 dgkeyiykep kltglseisf rlvklygekf gsetvkiiqd snkvnvkdld pkyahiqvty
     1861 vkpyfeekei serktefern hninrfvfet pytlsgkkhg sveeqckkrt ilttlnsfpy
     1921 vkkripvnye hqvnlkpidv atdeikdkta elqklcsagd vdmiqlqlkl qgcvsvqvna
     1981 gplayarafl sdsqsskypt kkvnelkemf rkfiqacgia lelnerlike dqleyheglk
     2041 snfrdmvkel sdiiheqiyh edtmhspwmh dslhvfcais gtsgdgsycs lrptaei
//
LOCUS       XP_053931337            2084 aa            linear   VRT 09-MAR-2023
DEFINITION  dedicator of cytokinesis protein 11 isoform X5 [Cuculus canorus].
ACCESSION   XP_053931337
VERSION     XP_053931337.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075362.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2084
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2084
                     /product="dedicator of cytokinesis protein 11 isoform X5"
                     /calculated_mol_wt=238500
     Region          37..147
                     /region_name="DOCK_C-D_N"
                     /note="Dedicator of cytokinesis C/D, N terminal;
                     pfam11878"
                     /db_xref="CDD:463380"
     Region          161..283
                     /region_name="PH_DOCK-D"
                     /note="Dedicator of cytokinesis-D subfamily Pleckstrin
                     homology (PH) domain; cd13267"
                     /db_xref="CDD:270087"
     Region          638..827
                     /region_name="C2_Dock-D"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; cd08697"
                     /db_xref="CDD:176079"
     Region          1625..2037
                     /region_name="DHR2_DOCK11"
                     /note="Dock Homology Region 2, a GEF domain, of Class D
                     Dedicator of Cytokinesis 11; cd11700"
                     /db_xref="CDD:212573"
     Site            order(1730,1740,1742..1743,1745..1746,1749..1750,
                     1752..1753,1756..1757)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:212573"
     Site            order(1764..1767,1798..1799,1801..1804,1806..1807,
                     1826..1828,1845,1847,1876,1878,1885..1886,1892,1894,
                     1931..1932,1935,1949,1951,1955,1958..1960,1963..1969,1972,
                     2000,2018..2019,2021..2022,2025)
                     /site_type="other"
                     /note="Cdc42 binding site [polypeptide binding]"
                     /db_xref="CDD:212573"
     Site            1963..1968
                     /site_type="other"
                     /note="nucleotide sensor"
                     /db_xref="CDD:212573"
     CDS             1..2084
                     /gene="DOCK11"
                     /coded_by="XM_054075362.1:55..6309"
                     /db_xref="GeneID:104063694"
ORIGIN      
        1 msevrkftkr lskpgtaael rqsvseavrs sfvlektkvv epldyenvll qrkvqiysdp
       61 lrdlllfpie dvsisvisrq rrtvqstvpe dalkkaqslf vkeciktyss dwhvvnykye
      121 eysgdfrmlp cksfrpdkip shvfeidedf ekdedssslc sqkggvikqg wlhkanvnst
      181 itvtmkvfkr ryfylsqltd gsyilnsykd ekiskeskgc ifldacndvv qcpkmrryaf
      241 elktidkysh ylaaeteqem eewlvtlkki iqnntesllq ekkdsvesvq ddesstqgks
      301 enileslers mhpelmkygr etdqlnklsr ndgrqnlfsf dpevqrldfs giepdakpfe
      361 ekcsrrfvvc cqdfslnlla qlndrsegap tnvepfflsl alfdlknnck isadfhvdln
      421 pssvrdmlld nsasraegtk grspgeslvy gvpesclrym krgvfsvtdp hteiflvarv
      481 ekvlqgsith caepyiknsd pgktaqkvhk vakqvcsrlg qyrmpfgwaa rpvfkdsqgt
      541 ldaegkfspl ykqdsskisn edmlkllaey kkpektklqv ipaqlnivik dipldftncv
      601 tasyipikpf ekscddiave veelvpevak ycypftvykn hlyiyplhlk yenqkmfaka
      661 rniavcvefr dsdeadarpl kciygkpggh llttnayaav lhhnqspefy deikielpih
      721 lhqkhhllft fyhvsceint katskkqdtv etqvgyawvs llkdgrivtl erhlpvssnl
      781 ppgylglgdt esrkqpsmda kwvdgakplf kirmhldsti ytqdmhlhkf fqycqvvqag
      841 akevpgelik ylkclhamei qvmiqflpvi lmqlfrvltn atqedevavn ctmvllhivs
      901 kcheegldhy lrsflkyvfr aekpsvtqak mthetlvlsm atilkqsadf lainkllkys
      961 wfffealaks mamylleenk iklprgqrfp esyqhalhsl llaiiphvti ryneipeesr
     1021 nvnfslanfl krcltfmdrg fvfnlindyi sgfspkdpkl lieykfeflq ticnhehyip
     1081 lnlpmtfskp klhrvqdffs faverftsvd inleysltde ycrhhflvgm llreasvalq
     1141 dnydirctai svlknllikh afdnryqhkn qqakiaqlyl plfglllenl qrvasrealy
     1201 scaaasspas rdefmcgfas psntssliad kdpaygaalp nghaikreds kgslssegat
     1261 gspdqgenir rsstrssvsh csrldqfeir tllmcylyiv kmisedtlla ywnkfspqel
     1321 invlvllevc lfhfryvgkr niarvhdawl skhtgadrks qtmpalrsra ggmqvrlqhl
     1381 gsletsftln hnagtseadi vhqallegni atevcltvld tisfftqsfk tqllsneghn
     1441 plmkkvfdih laflkngqse aalkhvfasl rafiskfpsa ffkgrvnmca alcyeilkcc
     1501 tskvsstrne asallyllmr nnfeftkrrt flrthlqiii avsqliadva lsggtrfqds
     1561 lliinnfans drpmkatafp sevkdltkri rtvlmataqm kehekdpeml idlqyslaks
     1621 yastpelrkt wldsmakihv kngdfseaam cyvhvaalva eflhrrklfp sgctafrkit
     1681 pnideegamk edggmmdvhy seevlvelle qcidglwkae ryetisevsk liipiyekrr
     1741 efekltqlyr tlhgayakil evmhtrkrll gtffrvafyg qtffeeedgk eyiykepklt
     1801 glseisfrlv klygekfgse tvkiiqdsnk vnvkdldpky ahiqvtyvkp yfeekeiser
     1861 ktefernhni nrfvfetpyt lsgkkhgsve eqckkrtilt tlnsfpyvkk ripvnyehqv
     1921 nlkpidvatd eikdktaelq klcsagdvdm iqlqlklqgc vsvqvnagpl ayaraflsds
     1981 qsskyptkkv nelkemfrkf iqacgialel nerlikedql eyheglksnf rdmvkelsdi
     2041 iheqiyhedt mhspwmhdsl hvfcaisgts gdgsycslrp taei
//
LOCUS       XP_053931338            2071 aa            linear   VRT 09-MAR-2023
DEFINITION  dedicator of cytokinesis protein 11 isoform X6 [Cuculus canorus].
ACCESSION   XP_053931338
VERSION     XP_053931338.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075363.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2071
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..2071
                     /product="dedicator of cytokinesis protein 11 isoform X6"
                     /calculated_mol_wt=236967
     Region          37..147
                     /region_name="DOCK_C-D_N"
                     /note="Dedicator of cytokinesis C/D, N terminal;
                     pfam11878"
                     /db_xref="CDD:463380"
     Region          161..283
                     /region_name="PH_DOCK-D"
                     /note="Dedicator of cytokinesis-D subfamily Pleckstrin
                     homology (PH) domain; cd13267"
                     /db_xref="CDD:270087"
     Region          638..827
                     /region_name="C2_Dock-D"
                     /note="C2 domains found in Dedicator Of CytoKinesis (Dock)
                     class C proteins; cd08697"
                     /db_xref="CDD:176079"
     Region          1612..2024
                     /region_name="DHR2_DOCK11"
                     /note="Dock Homology Region 2, a GEF domain, of Class D
                     Dedicator of Cytokinesis 11; cd11700"
                     /db_xref="CDD:212573"
     Site            order(1717,1727,1729..1730,1732..1733,1736..1737,
                     1739..1740,1743..1744)
                     /site_type="other"
                     /note="putative dimer interface [polypeptide binding]"
                     /db_xref="CDD:212573"
     Site            order(1751..1754,1785..1786,1788..1791,1793..1794,
                     1813..1815,1832,1834,1863,1865,1872..1873,1879,1881,
                     1918..1919,1922,1936,1938,1942,1945..1947,1950..1956,1959,
                     1987,2005..2006,2008..2009,2012)
                     /site_type="other"
                     /note="Cdc42 binding site [polypeptide binding]"
                     /db_xref="CDD:212573"
     Site            1950..1955
                     /site_type="other"
                     /note="nucleotide sensor"
                     /db_xref="CDD:212573"
     CDS             1..2071
                     /gene="DOCK11"
                     /coded_by="XM_054075363.1:55..6270"
                     /db_xref="GeneID:104063694"
ORIGIN      
        1 msevrkftkr lskpgtaael rqsvseavrs sfvlektkvv epldyenvll qrkvqiysdp
       61 lrdlllfpie dvsisvisrq rrtvqstvpe dalkkaqslf vkeciktyss dwhvvnykye
      121 eysgdfrmlp cksfrpdkip shvfeidedf ekdedssslc sqkggvikqg wlhkanvnst
      181 itvtmkvfkr ryfylsqltd gsyilnsykd ekiskeskgc ifldacndvv qcpkmrryaf
      241 elktidkysh ylaaeteqem eewlvtlkki iqnntesllq ekkdsvesvq ddesstqgks
      301 enileslers mhpelmkygr etdqlnklsr ndgrqnlfsf dpevqrldfs giepdakpfe
      361 ekcsrrfvvc cqdfslnlla qlndrsegap tnvepfflsl alfdlknnck isadfhvdln
      421 pssvrdmlld nsasraegtk grspgeslvy gvpesclrym krgvfsvtdp hteiflvarv
      481 ekvlqgsith caepyiknsd pgktaqkvhk vakqvcsrlg qyrmpfgwaa rpvfkdsqgt
      541 ldaegkfspl ykqdsskisn edmlkllaey kkpektklqv ipaqlnivik dipldftncv
      601 tasyipikpf ekscddiave veelvpevak ycypftvykn hlyiyplhlk yenqkmfaka
      661 rniavcvefr dsdeadarpl kciygkpggh llttnayaav lhhnqspefy deikielpih
      721 lhqkhhllft fyhvsceint katskkqdtv etqvgyawvs llkdgrivtl erhlpvssnl
      781 ppgylglgdt esrkqpsmda kwvdgakplf kirmhldsti ytqdmhlhkf fqycqvvqag
      841 akevpgelik ylkclhamei qvmiqflpvi lmqlfrvltn atqedevavn ctmvllhivs
      901 kcheegldhy lrsflkyvfr aekpsvtqak mthetlvlsm atilkqsadf lainkllkys
      961 wfffealaks mamylleenk iklprgqrfp esyqhalhsl llaiiphvti ryneipeesr
     1021 nvnfslanfl krcltfmdrg fvfnlindyi sgfspkdpkl lieykfeflq ticnhehyip
     1081 lnlpmtfskp klhrvqdinl eysltdeycr hhflvgmllr easvalqdny dirctaisvl
     1141 knllikhafd nryqhknqqa kiaqlylplf glllenlqrv asrealysca aasspasrde
     1201 fmcgfaspsn tssliadkdp aygaalpngh aikredskgs lssegatgsp dqgenirrss
     1261 trssvshcsr ldqfeirtll mcylyivkmi sedtllaywn kfspqelinv lvllevclfh
     1321 fryvgkrnia rvhdawlskh tgadrksqtm palrsraggm qvrlqhlgsl etsftlnhna
     1381 gtseadivhq allegniate vcltvldtis fftqsfktql lsneghnplm kkvfdihlaf
     1441 lkngqseaal khvfaslraf iskfpsaffk grvnmcaalc yeilkcctsk vsstrneasa
     1501 llyllmrnnf eftkrrtflr thlqiiiavs qliadvalsg gtrfqdslli innfansdrp
     1561 mkatafpsev kdltkrirtv lmataqmkeh ekdpemlidl qyslaksyas tpelrktwld
     1621 smakihvkng dfseaamcyv hvaalvaefl hrrklfpsgc tafrkitpni deegamkedg
     1681 gmmdvhysee vlvelleqci dglwkaerye tisevsklii piyekrrefe kltqlyrtlh
     1741 gayakilevm htrkrllgtf frvafygqtf feeedgkeyi ykepkltgls eisfrlvkly
     1801 gekfgsetvk iiqdsnkvnv kdldpkyahi qvtyvkpyfe ekeiserkte fernhninrf
     1861 vfetpytlsg kkhgsveeqc kkrtilttln sfpyvkkrip vnyehqvnlk pidvatdeik
     1921 dktaelqklc sagdvdmiql qlklqgcvsv qvnagplaya raflsdsqss kyptkkvnel
     1981 kemfrkfiqa cgialelner likedqleyh eglksnfrdm vkelsdiihe qiyhedtmhs
     2041 pwmhdslhvf caisgtsgdg sycslrptae i
//
LOCUS       XP_053931339            1168 aa            linear   VRT 09-MAR-2023
DEFINITION  NHS-like protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931339
VERSION     XP_053931339.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075364.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1168
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1168
                     /product="NHS-like protein 2 isoform X1"
                     /calculated_mol_wt=124236
     Region          <727..1103
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     CDS             1..1168
                     /gene="NHSL2"
                     /coded_by="XM_054075364.1:321..3827"
                     /db_xref="GeneID:104060516"
ORIGIN      
        1 mpfykrsvva rrcrpavpls elrdvcslaa ltllrqlael cghslallgd ieghvlalgh
       61 ragrlhrrta rlqalllraq patsnvdien kkathpklsw qqpvnvflaa grppgmeqlh
      121 qeaqlnlqsl mqeeyeeqya esrvtgqtfr aagqlppdtp pepsprplpa krlefvlmpp
      181 srqaaeeett sttalgtqpp dtslslptsp dkqppwaraf plptveekqw hqscsiqtni
      241 ipinvsgqhf arhasarhsl fntetamnpk stlrrrrtii gfpnlslrdq ggangptltt
      301 rvpiteslsc sfvpeasspg kapqeisprq plsaplrktf sdlgarccqp ptamdhaatp
      361 castcngpqg tpfpppwstl gyvsppspat gqgkgpasts lggsspspsp gspaaasffi
      421 ameehvgsng pssfsgtvpe spstsrssqr cdgqeatvnf spgsqeeaav epvrlevgqp
      481 gcwfrersls vptdsgslcs vdmscadtrr gsanyalgyp sassegstst dnislgleqe
      541 gqrrrrsksi slkkakkkps pptrsvslik egqddamgtg lvlpkdqrpk slciapepqg
      601 hrlvhadpqg svgrepdgta tphqwhladw kagdpyrsls ssstatgtta iecakargss
      661 esltspsvsr attpsqlste adlktcspgr ptglmspssg yssqsetptp tiptstilgh
      721 sphqvrvrpl vperksslpp tspmerspks rlsfdlpltp pahldlsglk islkgktkvs
      781 rhhsdstfgt klaqktspit pimpvvtqsd lrsvrlrsis rsepedntdg pehaeeparg
      841 pcpgperkvk ppvaekppla krppiilpkp talqeegpls ptsppgtkek glpqggfvvl
      901 rkgelrrgpg epplslmpag prrlsqgsle deprlqwssa gegerkkakv pppvpkkpsv
      961 lylplapapa qlgtsmgdqv ptpspiitld vdptccnpga edvpspealg taqagdptse
     1021 qgssadaste eksfashkta dsiteedddv fvtsrttedl ftmihrskrk vlgrkepgdt
     1081 fssrpnshsp vktsgsptge spaagstgks ssrnedfkal lqkkssktsl gtrpsaaell
     1141 kttnplarrv mtefapeldg annpksqp
//
LOCUS       XP_053931340            1124 aa            linear   VRT 09-MAR-2023
DEFINITION  NHS-like protein 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931340
VERSION     XP_053931340.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075365.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1124
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1124
                     /product="NHS-like protein 2 isoform X2"
                     /calculated_mol_wt=119163
     Region          <180..405
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <683..1059
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     CDS             1..1124
                     /gene="NHSL2"
                     /coded_by="XM_054075365.1:321..3695"
                     /db_xref="GeneID:104060516"
ORIGIN      
        1 mpfykrsvva rrcrpavpls elrdvcslaa ltllrqlael cghslallgd ieghvlalgh
       61 ragrlhrrta rlqalllraq patsnvdien kkathpklsw qqpvnvflaa grppgmeqlh
      121 qeaqlnlqsl mqeeyeeqya esrvtgqtfr aagqlppdtp pepsprplpa krlefvlmpp
      181 srqaaeeett sttalgtqpp dtslslptsp dkqppwaraf plptveekqw hqscsiqtni
      241 ipinvsggan gptlttrvpi teslscsfvp easspgkapq eisprqplsa plrktfsdlg
      301 arccqpptam dhaatpcast cngpqgtpfp ppwstlgyvs ppspatgqgk gpastslggs
      361 spspspgspa aasffiamee hvgsngpssf sgtvpespst srssqrcdgq eatvnfspgs
      421 qeeaavepvr levgqpgcwf rerslsvptd sgslcsvdms cadtrrgsan yalgypsass
      481 egststdnis lgleqegqrr rrsksislkk akkkpspptr svslikegqd damgtglvlp
      541 kdqrpkslci apepqghrlv hadpqgsvgr epdgtatphq whladwkagd pyrslsssst
      601 atgttaieca kargsseslt spsvsrattp sqlsteadlk tcspgrptgl mspssgyssq
      661 setptptipt stilghsphq vrvrplvper ksslpptspm erspksrlsf dlpltppahl
      721 dlsglkislk gktkvsrhhs dstfgtklaq ktspitpimp vvtqsdlrsv rlrsisrsep
      781 edntdgpeha eepargpcpg perkvkppva ekpplakrpp iilpkptalq eegplsptsp
      841 pgtkekglpq ggfvvlrkge lrrgpgeppl slmpagprrl sqgsledepr lqwssagege
      901 rkkakvpppv pkkpsvlylp lapapaqlgt smgdqvptps piitldvdpt ccnpgaedvp
      961 spealgtaqa gdptseqgss adasteeksf ashktadsit eedddvfvts rttedlftmi
     1021 hrskrkvlgr kepgdtfssr pnshspvkts gsptgespaa gstgksssrn edfkallqkk
     1081 ssktslgtrp saaellkttn plarrvmtef apeldgannp ksqp
//
LOCUS       XP_053931341            1108 aa            linear   VRT 09-MAR-2023
DEFINITION  NHS-like protein 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931341
VERSION     XP_053931341.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075366.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1108
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1108
                     /product="NHS-like protein 2 isoform X3"
                     /calculated_mol_wt=117632
     Region          <667..1043
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     CDS             1..1108
                     /gene="NHSL2"
                     /coded_by="XM_054075366.1:67..3393"
                     /db_xref="GeneID:104060516"
ORIGIN      
        1 mgnaqrkapr gqrrgrmraa tatsnvdien kkathpklsw qqpvnvflaa grppgmeqlh
       61 qeaqlnlqsl mqeeyeeqya esrvtgqtfr aagqlppdtp pepsprplpa krlefvlmpp
      121 srqaaeeett sttalgtqpp dtslslptsp dkqppwaraf plptveekqw hqscsiqtni
      181 ipinvsgqhf arhasarhsl fntetamnpk stlrrrrtii gfpnlslrdq ggangptltt
      241 rvpiteslsc sfvpeasspg kapqeisprq plsaplrktf sdlgarccqp ptamdhaatp
      301 castcngpqg tpfpppwstl gyvsppspat gqgkgpasts lggsspspsp gspaaasffi
      361 ameehvgsng pssfsgtvpe spstsrssqr cdgqeatvnf spgsqeeaav epvrlevgqp
      421 gcwfrersls vptdsgslcs vdmscadtrr gsanyalgyp sassegstst dnislgleqe
      481 gqrrrrsksi slkkakkkps pptrsvslik egqddamgtg lvlpkdqrpk slciapepqg
      541 hrlvhadpqg svgrepdgta tphqwhladw kagdpyrsls ssstatgtta iecakargss
      601 esltspsvsr attpsqlste adlktcspgr ptglmspssg yssqsetptp tiptstilgh
      661 sphqvrvrpl vperksslpp tspmerspks rlsfdlpltp pahldlsglk islkgktkvs
      721 rhhsdstfgt klaqktspit pimpvvtqsd lrsvrlrsis rsepedntdg pehaeeparg
      781 pcpgperkvk ppvaekppla krppiilpkp talqeegpls ptsppgtkek glpqggfvvl
      841 rkgelrrgpg epplslmpag prrlsqgsle deprlqwssa gegerkkakv pppvpkkpsv
      901 lylplapapa qlgtsmgdqv ptpspiitld vdptccnpga edvpspealg taqagdptse
      961 qgssadaste eksfashkta dsiteedddv fvtsrttedl ftmihrskrk vlgrkepgdt
     1021 fssrpnshsp vktsgsptge spaagstgks ssrnedfkal lqkkssktsl gtrpsaaell
     1081 kttnplarrv mtefapeldg annpksqp
//
LOCUS       XP_053931342            1108 aa            linear   VRT 09-MAR-2023
DEFINITION  NHS-like protein 2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931342
VERSION     XP_053931342.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075367.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1108
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1108
                     /product="NHS-like protein 2 isoform X4"
                     /calculated_mol_wt=117251
     Region          <667..1043
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     CDS             1..1108
                     /gene="NHSL2"
                     /coded_by="XM_054075367.1:812..4138"
                     /db_xref="GeneID:104060516"
ORIGIN      
        1 mplageqpga lgagssvyva latsnvdien kkathpklsw qqpvnvflaa grppgmeqlh
       61 qeaqlnlqsl mqeeyeeqya esrvtgqtfr aagqlppdtp pepsprplpa krlefvlmpp
      121 srqaaeeett sttalgtqpp dtslslptsp dkqppwaraf plptveekqw hqscsiqtni
      181 ipinvsgqhf arhasarhsl fntetamnpk stlrrrrtii gfpnlslrdq ggangptltt
      241 rvpiteslsc sfvpeasspg kapqeisprq plsaplrktf sdlgarccqp ptamdhaatp
      301 castcngpqg tpfpppwstl gyvsppspat gqgkgpasts lggsspspsp gspaaasffi
      361 ameehvgsng pssfsgtvpe spstsrssqr cdgqeatvnf spgsqeeaav epvrlevgqp
      421 gcwfrersls vptdsgslcs vdmscadtrr gsanyalgyp sassegstst dnislgleqe
      481 gqrrrrsksi slkkakkkps pptrsvslik egqddamgtg lvlpkdqrpk slciapepqg
      541 hrlvhadpqg svgrepdgta tphqwhladw kagdpyrsls ssstatgtta iecakargss
      601 esltspsvsr attpsqlste adlktcspgr ptglmspssg yssqsetptp tiptstilgh
      661 sphqvrvrpl vperksslpp tspmerspks rlsfdlpltp pahldlsglk islkgktkvs
      721 rhhsdstfgt klaqktspit pimpvvtqsd lrsvrlrsis rsepedntdg pehaeeparg
      781 pcpgperkvk ppvaekppla krppiilpkp talqeegpls ptsppgtkek glpqggfvvl
      841 rkgelrrgpg epplslmpag prrlsqgsle deprlqwssa gegerkkakv pppvpkkpsv
      901 lylplapapa qlgtsmgdqv ptpspiitld vdptccnpga edvpspealg taqagdptse
      961 qgssadaste eksfashkta dsiteedddv fvtsrttedl ftmihrskrk vlgrkepgdt
     1021 fssrpnshsp vktsgsptge spaagstgks ssrnedfkal lqkkssktsl gtrpsaaell
     1081 kttnplarrv mtefapeldg annpksqp
//
LOCUS       XP_053931343            1103 aa            linear   VRT 09-MAR-2023
DEFINITION  NHS-like protein 2 isoform X5 [Cuculus canorus].
ACCESSION   XP_053931343
VERSION     XP_053931343.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075368.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1103
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1103
                     /product="NHS-like protein 2 isoform X5"
                     /calculated_mol_wt=117109
     Region          <662..1038
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     CDS             1..1103
                     /gene="NHSL2"
                     /coded_by="XM_054075368.1:2078..5389"
                     /db_xref="GeneID:104060516"
ORIGIN      
        1 malsnislwi rdawavatsn vdienkkath pklswqqpvn vflaagrppg meqlhqeaql
       61 nlqslmqeey eeqyaesrvt gqtfraagql ppdtppepsp rplpakrlef vlmppsrqaa
      121 eeettsttal gtqppdtsls lptspdkqpp warafplptv eekqwhqscs iqtniipinv
      181 sgqhfarhas arhslfntet amnpkstlrr rrtiigfpnl slrdqggang ptlttrvpit
      241 eslscsfvpe asspgkapqe isprqplsap lrktfsdlga rccqpptamd haatpcastc
      301 ngpqgtpfpp pwstlgyvsp pspatgqgkg pastslggss pspspgspaa asffiameeh
      361 vgsngpssfs gtvpespsts rssqrcdgqe atvnfspgsq eeaavepvrl evgqpgcwfr
      421 erslsvptds gslcsvdmsc adtrrgsany algypsasse gststdnisl gleqegqrrr
      481 rsksislkka kkkpspptrs vslikegqdd amgtglvlpk dqrpkslcia pepqghrlvh
      541 adpqgsvgre pdgtatphqw hladwkagdp yrslssssta tgttaiecak argsseslts
      601 psvsrattps qlsteadlkt cspgrptglm spssgyssqs etptptipts tilghsphqv
      661 rvrplvperk sslpptspme rspksrlsfd lpltppahld lsglkislkg ktkvsrhhsd
      721 stfgtklaqk tspitpimpv vtqsdlrsvr lrsisrsepe dntdgpehae epargpcpgp
      781 erkvkppvae kpplakrppi ilpkptalqe egplsptspp gtkekglpqg gfvvlrkgel
      841 rrgpgeppls lmpagprrls qgsledeprl qwssageger kkakvpppvp kkpsvlylpl
      901 apapaqlgts mgdqvptpsp iitldvdptc cnpgaedvps pealgtaqag dptseqgssa
      961 dasteeksfa shktadsite edddvfvtsr ttedlftmih rskrkvlgrk epgdtfssrp
     1021 nshspvktsg sptgespaag stgksssrne dfkallqkks sktslgtrps aaellkttnp
     1081 larrvmtefa peldgannpk sqp
//
LOCUS       XP_009560615            1101 aa            linear   VRT 09-MAR-2023
DEFINITION  NHS-like protein 2 isoform X6 [Cuculus canorus].
ACCESSION   XP_009560615
VERSION     XP_009560615.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009562320.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009560615.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1101
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1101
                     /product="NHS-like protein 2 isoform X6"
                     /calculated_mol_wt=116928
     Region          <660..1036
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     CDS             1..1101
                     /gene="NHSL2"
                     /coded_by="XM_009562320.2:641..3946"
                     /db_xref="GeneID:104060516"
ORIGIN      
        1 makaewllap whrgatsnvd ienkkathpk lswqqpvnvf laagrppgme qlhqeaqlnl
       61 qslmqeeyee qyaesrvtgq tfraagqlpp dtppepsprp lpakrlefvl mppsrqaaee
      121 ettsttalgt qppdtslslp tspdkqppwa rafplptvee kqwhqscsiq tniipinvsg
      181 qhfarhasar hslfntetam npkstlrrrr tiigfpnlsl rdqggangpt lttrvpites
      241 lscsfvpeas spgkapqeis prqplsaplr ktfsdlgarc cqpptamdha atpcastcng
      301 pqgtpfpppw stlgyvspps patgqgkgpa stslggssps pspgspaaas ffiameehvg
      361 sngpssfsgt vpespstsrs sqrcdgqeat vnfspgsqee aavepvrlev gqpgcwfrer
      421 slsvptdsgs lcsvdmscad trrgsanyal gypsassegs tstdnislgl eqegqrrrrs
      481 ksislkkakk kpspptrsvs likegqddam gtglvlpkdq rpkslciape pqghrlvhad
      541 pqgsvgrepd gtatphqwhl adwkagdpyr slsssstatg ttaiecakar gssesltsps
      601 vsrattpsql steadlktcs pgrptglmsp ssgyssqset ptptiptsti lghsphqvrv
      661 rplvperkss lpptspmers pksrlsfdlp ltppahldls glkislkgkt kvsrhhsdst
      721 fgtklaqkts pitpimpvvt qsdlrsvrlr sisrsepedn tdgpehaeep argpcpgper
      781 kvkppvaekp plakrppiil pkptalqeeg plsptsppgt kekglpqggf vvlrkgelrr
      841 gpgepplslm pagprrlsqg sledeprlqw ssagegerkk akvpppvpkk psvlylplap
      901 apaqlgtsmg dqvptpspii tldvdptccn pgaedvpspe algtaqagdp tseqgssada
      961 steeksfash ktadsiteed ddvfvtsrtt edlftmihrs krkvlgrkep gdtfssrpns
     1021 hspvktsgsp tgespaagst gksssrnedf kallqkkssk tslgtrpsaa ellkttnpla
     1081 rrvmtefape ldgannpksq p
//
LOCUS       XP_053931344            1053 aa            linear   VRT 09-MAR-2023
DEFINITION  NHS-like protein 2 isoform X7 [Cuculus canorus].
ACCESSION   XP_053931344
VERSION     XP_053931344.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075369.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1053
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1053
                     /product="NHS-like protein 2 isoform X7"
                     /calculated_mol_wt=111626
     Region          <612..988
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     CDS             1..1053
                     /gene="NHSL2"
                     /coded_by="XM_054075369.1:183..3344"
                     /db_xref="GeneID:104060516"
ORIGIN      
        1 meqlhqeaql nlqslmqeey eeqyaesrvt gqtfraagql ppdtppepsp rplpakrlef
       61 vlmppsrqaa eeettsttal gtqppdtsls lptspdkqpp warafplptv eekqwhqscs
      121 iqtniipinv sgqhfarhas arhslfntet amnpkstlrr rrtiigfpnl slrdqggang
      181 ptlttrvpit eslscsfvpe asspgkapqe isprqplsap lrktfsdlga rccqpptamd
      241 haatpcastc ngpqgtpfpp pwstlgyvsp pspatgqgkg pastslggss pspspgspaa
      301 asffiameeh vgsngpssfs gtvpespsts rssqrcdgqe atvnfspgsq eeaavepvrl
      361 evgqpgcwfr erslsvptds gslcsvdmsc adtrrgsany algypsasse gststdnisl
      421 gleqegqrrr rsksislkka kkkpspptrs vslikegqdd amgtglvlpk dqrpkslcia
      481 pepqghrlvh adpqgsvgre pdgtatphqw hladwkagdp yrslssssta tgttaiecak
      541 argsseslts psvsrattps qlsteadlkt cspgrptglm spssgyssqs etptptipts
      601 tilghsphqv rvrplvperk sslpptspme rspksrlsfd lpltppahld lsglkislkg
      661 ktkvsrhhsd stfgtklaqk tspitpimpv vtqsdlrsvr lrsisrsepe dntdgpehae
      721 epargpcpgp erkvkppvae kpplakrppi ilpkptalqe egplsptspp gtkekglpqg
      781 gfvvlrkgel rrgpgeppls lmpagprrls qgsledeprl qwssageger kkakvpppvp
      841 kkpsvlylpl apapaqlgts mgdqvptpsp iitldvdptc cnpgaedvps pealgtaqag
      901 dptseqgssa dasteeksfa shktadsite edddvfvtsr ttedlftmih rskrkvlgrk
      961 epgdtfssrp nshspvktsg sptgespaag stgksssrne dfkallqkks sktslgtrps
     1021 aaellkttnp larrvmtefa peldgannpk sqp
//
LOCUS       XP_053931345            1053 aa            linear   VRT 09-MAR-2023
DEFINITION  NHS-like protein 2 isoform X7 [Cuculus canorus].
ACCESSION   XP_053931345
VERSION     XP_053931345.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075370.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1053
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1053
                     /product="NHS-like protein 2 isoform X7"
                     /calculated_mol_wt=111626
     Region          <612..988
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     CDS             1..1053
                     /gene="NHSL2"
                     /coded_by="XM_054075370.1:1590..4751"
                     /db_xref="GeneID:104060516"
ORIGIN      
        1 meqlhqeaql nlqslmqeey eeqyaesrvt gqtfraagql ppdtppepsp rplpakrlef
       61 vlmppsrqaa eeettsttal gtqppdtsls lptspdkqpp warafplptv eekqwhqscs
      121 iqtniipinv sgqhfarhas arhslfntet amnpkstlrr rrtiigfpnl slrdqggang
      181 ptlttrvpit eslscsfvpe asspgkapqe isprqplsap lrktfsdlga rccqpptamd
      241 haatpcastc ngpqgtpfpp pwstlgyvsp pspatgqgkg pastslggss pspspgspaa
      301 asffiameeh vgsngpssfs gtvpespsts rssqrcdgqe atvnfspgsq eeaavepvrl
      361 evgqpgcwfr erslsvptds gslcsvdmsc adtrrgsany algypsasse gststdnisl
      421 gleqegqrrr rsksislkka kkkpspptrs vslikegqdd amgtglvlpk dqrpkslcia
      481 pepqghrlvh adpqgsvgre pdgtatphqw hladwkagdp yrslssssta tgttaiecak
      541 argsseslts psvsrattps qlsteadlkt cspgrptglm spssgyssqs etptptipts
      601 tilghsphqv rvrplvperk sslpptspme rspksrlsfd lpltppahld lsglkislkg
      661 ktkvsrhhsd stfgtklaqk tspitpimpv vtqsdlrsvr lrsisrsepe dntdgpehae
      721 epargpcpgp erkvkppvae kpplakrppi ilpkptalqe egplsptspp gtkekglpqg
      781 gfvvlrkgel rrgpgeppls lmpagprrls qgsledeprl qwssageger kkakvpppvp
      841 kkpsvlylpl apapaqlgts mgdqvptpsp iitldvdptc cnpgaedvps pealgtaqag
      901 dptseqgssa dasteeksfa shktadsite edddvfvtsr ttedlftmih rskrkvlgrk
      961 epgdtfssrp nshspvktsg sptgespaag stgksssrne dfkallqkks sktslgtrps
     1021 aaellkttnp larrvmtefa peldgannpk sqp
//
LOCUS       XP_053931346            1053 aa            linear   VRT 09-MAR-2023
DEFINITION  NHS-like protein 2 isoform X7 [Cuculus canorus].
ACCESSION   XP_053931346
VERSION     XP_053931346.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075371.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1053
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1053
                     /product="NHS-like protein 2 isoform X7"
                     /calculated_mol_wt=111626
     Region          <612..988
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     CDS             1..1053
                     /gene="NHSL2"
                     /coded_by="XM_054075371.1:1925..5086"
                     /db_xref="GeneID:104060516"
ORIGIN      
        1 meqlhqeaql nlqslmqeey eeqyaesrvt gqtfraagql ppdtppepsp rplpakrlef
       61 vlmppsrqaa eeettsttal gtqppdtsls lptspdkqpp warafplptv eekqwhqscs
      121 iqtniipinv sgqhfarhas arhslfntet amnpkstlrr rrtiigfpnl slrdqggang
      181 ptlttrvpit eslscsfvpe asspgkapqe isprqplsap lrktfsdlga rccqpptamd
      241 haatpcastc ngpqgtpfpp pwstlgyvsp pspatgqgkg pastslggss pspspgspaa
      301 asffiameeh vgsngpssfs gtvpespsts rssqrcdgqe atvnfspgsq eeaavepvrl
      361 evgqpgcwfr erslsvptds gslcsvdmsc adtrrgsany algypsasse gststdnisl
      421 gleqegqrrr rsksislkka kkkpspptrs vslikegqdd amgtglvlpk dqrpkslcia
      481 pepqghrlvh adpqgsvgre pdgtatphqw hladwkagdp yrslssssta tgttaiecak
      541 argsseslts psvsrattps qlsteadlkt cspgrptglm spssgyssqs etptptipts
      601 tilghsphqv rvrplvperk sslpptspme rspksrlsfd lpltppahld lsglkislkg
      661 ktkvsrhhsd stfgtklaqk tspitpimpv vtqsdlrsvr lrsisrsepe dntdgpehae
      721 epargpcpgp erkvkppvae kpplakrppi ilpkptalqe egplsptspp gtkekglpqg
      781 gfvvlrkgel rrgpgeppls lmpagprrls qgsledeprl qwssageger kkakvpppvp
      841 kkpsvlylpl apapaqlgts mgdqvptpsp iitldvdptc cnpgaedvps pealgtaqag
      901 dptseqgssa dasteeksfa shktadsite edddvfvtsr ttedlftmih rskrkvlgrk
      961 epgdtfssrp nshspvktsg sptgespaag stgksssrne dfkallqkks sktslgtrps
     1021 aaellkttnp larrvmtefa peldgannpk sqp
//
LOCUS       XP_053931347             150 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853120 [Cuculus canorus].
ACCESSION   XP_053931347
VERSION     XP_053931347.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075372.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..150
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..150
                     /product="uncharacterized protein LOC128853120"
                     /calculated_mol_wt=15640
     CDS             1..150
                     /gene="LOC128853120"
                     /coded_by="XM_054075372.1:1..453"
                     /db_xref="GeneID:128853120"
ORIGIN      
        1 mpaprppgtr ttsrrrrrrs ragpsraasp raaapppppr nrarrgegrp rgggagrqes
       61 msealapass seprgcvsfa palptarfsq ptpapcvlps ssrtilptrs aglppnrare
      121 gasgrvppac psrplwpwks kphagcsvqp
//
LOCUS       XP_009560599             213 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related protein Rab-39B [Cuculus canorus].
ACCESSION   XP_009560599
VERSION     XP_009560599.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009562304.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..213
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..213
                     /product="ras-related protein Rab-39B"
                     /calculated_mol_wt=24463
     Region          7..213
                     /region_name="Rab39"
                     /note="Rab GTPase family 39 (Rab39); cd04111"
                     /db_xref="CDD:133311"
     Site            9..10
                     /site_type="other"
                     /note="Rab subfamily motif 1 (RabSF1)"
                     /db_xref="CDD:133311"
     Site            15..22
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:133311"
     Site            order(17..23,33,39..40,67,123..124,126,153..155)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:133311"
     Site            order(23..34,38..39)
                     /site_type="other"
                     /note="Rab subfamily motif 2 (RabSF2)"
                     /db_xref="CDD:133311"
     Site            order(33,38..46)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:133311"
     Site            order(38,42..49,57,59)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133311"
     Site            40
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:133311"
     Site            order(41,43..45,61,63,70..71,74,78,80..83,171)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:133311"
     Site            order(41..42,44,63..64,71,73,75..77)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133311"
     Site            41..45
                     /site_type="other"
                     /note="Rab family motif 1 (RabF1)"
                     /db_xref="CDD:133311"
     Site            59..63
                     /site_type="other"
                     /note="Rab family motif 2 (RabF2)"
                     /db_xref="CDD:133311"
     Site            64..67
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:133311"
     Site            order(67,69..79)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:133311"
     Site            70..75
                     /site_type="other"
                     /note="Rab family motif 3 (RabF3)"
                     /db_xref="CDD:133311"
     Site            78..82
                     /site_type="other"
                     /note="Rab family motif 4 (RabF4)"
                     /db_xref="CDD:133311"
     Site            87..92
                     /site_type="other"
                     /note="Rab family motif 5 (RabF5)"
                     /db_xref="CDD:133311"
     Site            116..120
                     /site_type="other"
                     /note="Rab subfamily motif 3 (RabSF3)"
                     /db_xref="CDD:133311"
     Site            123..126
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:133311"
     Site            153..155
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:133311"
     Site            169..171
                     /site_type="other"
                     /note="Rab subfamily motif 4 (RabSF4)"
                     /db_xref="CDD:133311"
     Site            211..213
                     /site_type="other"
                     /note="putative lipid modification site [posttranslational
                     modification]"
                     /db_xref="CDD:133311"
     CDS             1..213
                     /gene="LOC104060502"
                     /coded_by="XM_009562304.2:209..850"
                     /db_xref="GeneID:104060502"
ORIGIN      
        1 meaiwlyqfr livigdstvg ksclirrfte grfaqisdpt vgvdffsrlv eiepgkrikl
       61 qiwdtagqer frsitrayyr nsvgglllfd itnrrsfqnv hewleetkvh vqpyqivfvl
      121 vghkcdldtq rqvtrheaek laaaygmkyi etsardainv ekaftdltrd iyelvkrgdi
      181 siqegwegvk sgfvpnvvhs seevvksdrr clc
//
LOCUS       XP_053931349             197 aa            linear   VRT 09-MAR-2023
DEFINITION  prefoldin subunit 3 [Cuculus canorus].
ACCESSION   XP_053931349
VERSION     XP_053931349.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075374.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..197
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..197
                     /product="prefoldin subunit 3"
                     /calculated_mol_wt=22141
     Region          52..180
                     /region_name="Prefoldin_3"
                     /note="Prefoldin subunit 3; cd23156"
                     /db_xref="CDD:467472"
     Region          52..91
                     /region_name="coiled coil"
                     /note="coiled coil [structural motif]"
                     /db_xref="CDD:467472"
     Site            order(53,56..57,60,164,167..168,170..172,174..175)
                     /site_type="other"
                     /note="prefoldin/TRiC interface [polypeptide binding]"
                     /db_xref="CDD:467472"
     Site            order(80,83..84,87..88,90..91,101..108,110..119,122..126,
                     130..135,144)
                     /site_type="other"
                     /note="prefoldin oligomer interface [polypeptide binding]"
                     /db_xref="CDD:467472"
     Region          138..180
                     /region_name="coiled coil"
                     /note="coiled coil [structural motif]"
                     /db_xref="CDD:467472"
     CDS             1..197
                     /gene="VBP1"
                     /coded_by="XM_054075374.1:41..634"
                     /db_xref="GeneID:104060501"
ORIGIN      
        1 maaatsgeag cgeaaaggkr gplgipeavf vedvdsfmkq pgnetadvvl kkldeqyqky
       61 kflelnlaqk krrlksqipe ikqtleilkh mqkkkdstnp metrflladn lyctasvppt
      121 dkvclwlgan vmleydidea qalleknlst atrnldllee dldflrdqft ttevnmarvy
      181 nwdvkrrnkq dpsknka
//
LOCUS       XP_053931351             883 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931351
VERSION     XP_053931351.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075376.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..883
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..883
                     /product="glutamate receptor 3 isoform X1"
                     /calculated_mol_wt=99278
     Region          29..401
                     /region_name="PBP1_iGluR_AMPA_GluR3"
                     /note="N-terminal leucine-isoleucine-valine binding
                     protein (LIVBP)-like domain of the GluR3 subunit of the
                     AMPA receptor; cd06387"
                     /db_xref="CDD:380610"
     Site            order(76..78,81..82,85,110,113,159,169,172..173,176..177,
                     184,186,202,333..335,337,339)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:380610"
     Site            order(77..78,85,104..106,109..110,114,159,165,169,
                     172..173,175..177,179,182..183,185,206,334..338)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:380610"
     Region          416..799
                     /region_name="PBP2_iGluR_AMPA"
                     /note="The ligand-binding domain of the AMPA
                     (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic
                     acid) subtypes of ionotropic glutamate receptors, a member
                     of the type 2 periplasmic binding fold protein
                     superfamily; cd13715"
                     /db_xref="CDD:270433"
     Site            order(455,459,506..507,510,515..518,755,773..774,777..782,
                     784,787)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:270433"
     Site            order(474,502..504,509,676,679..681,730..731,734,758)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:270433"
     Site            order(517..521,777,780,785..786,789)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:270433"
     CDS             1..883
                     /gene="GRIA3"
                     /coded_by="XM_054075376.1:152..2803"
                     /db_xref="GeneID:104068496"
ORIGIN      
        1 mgqsaprtll lllagllgda lagfpntisi gglfmrntvq ehsafrfavq lyntnqntte
       61 kpfhlnyhvd hldssnsfsv tnafcsqfsr gvyaifgfyd qmsmntltsf cgalhtsfvt
      121 psfptdadvq fviqmrpalk gailslltyy kwekfvylyd tergfsilqa imeaavqnnw
      181 qvtarsvgsi kdvqefrrii eemdrrqekr ylidcevdri ntileqvvil gkhsrgyhym
      241 lanlgytdiv lervmhggan vtgfqivnne npmvqqflqr wvrlderefp eaknsplkyt
      301 salthdavlv iaeafrylrr qrvdvsrrgs agdclanpav pwsqgidier alkmvqvqgm
      361 tgniqfdtyg rrtnytidvy emkaagsrka gywneyerfv paldllpsnd tssvenrtiv
      421 vttilespyv mykknheqle gneryegycv dlaseiakhv gikyklsivg dgkygardpe
      481 tkiwngmvge lvygradiav apltitlvre evidfskpfm slgisimikk pqkskpgvfs
      541 fldplayeiw mcivfayigv svvlflvsrf spyewhleds neeprdpqnp pdppnefgif
      601 nslwfslgaf mqqgcdispr slsgrivggv wwfftliiis sytanlaafl tvermvspie
      661 saedlakqte iaygtldsgs tkeffrrski avyekmwsym ksaepsvftk ttadgvarvr
      721 kskgkfafll estmneyieq rkpcdtmkvg gnldskgygv atpkgsalrn avnlavlkln
      781 eqglldklkn kwwydkgecg sgggdskdkt salslsnvag vfyilvgglg lammvalief
      841 cyksraeskr mkltkntqnf kpapatntqn yatyregynv ssp
//
LOCUS       XP_053931352             819 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931352
VERSION     XP_053931352.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075377.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..819
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..819
                     /product="glutamate receptor 3 isoform X2"
                     /calculated_mol_wt=92075
     Region          29..401
                     /region_name="PBP1_iGluR_AMPA_GluR3"
                     /note="N-terminal leucine-isoleucine-valine binding
                     protein (LIVBP)-like domain of the GluR3 subunit of the
                     AMPA receptor; cd06387"
                     /db_xref="CDD:380610"
     Site            order(76..78,81..82,85,110,113,159,169,172..173,176..177,
                     184,186,202,333..335,337,339)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:380610"
     Site            order(77..78,85,104..106,109..110,114,159,165,169,
                     172..173,175..177,179,182..183,185,206,334..338)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:380610"
     Region          <426..461
                     /region_name="Lig_chan-Glu_bd"
                     /note="Ligated ion channel L-glutamate- and
                     glycine-binding site; pfam10613"
                     /db_xref="CDD:463166"
     Region          479..759
                     /region_name="Lig_chan"
                     /note="Ligand-gated ion channel; pfam00060"
                     /db_xref="CDD:459656"
     CDS             1..819
                     /gene="GRIA3"
                     /coded_by="XM_054075377.1:152..2611"
                     /db_xref="GeneID:104068496"
ORIGIN      
        1 mgqsaprtll lllagllgda lagfpntisi gglfmrntvq ehsafrfavq lyntnqntte
       61 kpfhlnyhvd hldssnsfsv tnafcsqfsr gvyaifgfyd qmsmntltsf cgalhtsfvt
      121 psfptdadvq fviqmrpalk gailslltyy kwekfvylyd tergfsilqa imeaavqnnw
      181 qvtarsvgsi kdvqefrrii eemdrrqekr ylidcevdri ntileqvvil gkhsrgyhym
      241 lanlgytdiv lervmhggan vtgfqivnne npmvqqflqr wvrlderefp eaknsplkyt
      301 salthdavlv iaeafrylrr qrvdvsrrgs agdclanpav pwsqgidier alkmvqvqgm
      361 tgniqfdtyg rrtnytidvy emkaagsrka gywneyerfv paldllpsnd tssvenrtiv
      421 vttilradia vapltitlvr eevidfskpf mslgisimik kpqkskpgvf sfldplayei
      481 wmcivfayig vsvvlflvsr fspyewhled sneeprdpqn ppdppnefgi fnslwfslga
      541 fmqqgcdisp rslsgrivgg vwwfftliii ssytanlaaf ltvermvspi esaedlakqt
      601 eiaygtldsg stkeffrrsk iavyekmwsy mksaepsvft kttadgvarv rkskgkfafl
      661 lestmneyie qrkpcdtmkv ggnldskgyg vatpkgsalr navnlavlkl neqglldklk
      721 nkwwydkgec gsgggdskdk tsalslsnva gvfyilvggl glammvalie fcyksraesk
      781 rmkltkntqn fkpapatntq nyatyregyn vygtesvki
//
LOCUS       XP_053931353             818 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor 3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931353
VERSION     XP_053931353.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075378.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..818
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..818
                     /product="glutamate receptor 3 isoform X3"
                     /calculated_mol_wt=92159
     Region          29..401
                     /region_name="PBP1_iGluR_AMPA_GluR3"
                     /note="N-terminal leucine-isoleucine-valine binding
                     protein (LIVBP)-like domain of the GluR3 subunit of the
                     AMPA receptor; cd06387"
                     /db_xref="CDD:380610"
     Site            order(76..78,81..82,85,110,113,159,169,172..173,176..177,
                     184,186,202,333..335,337,339)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:380610"
     Site            order(77..78,85,104..106,109..110,114,159,165,169,
                     172..173,175..177,179,182..183,185,206,334..338)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:380610"
     Region          416..799
                     /region_name="PBP2_iGluR_AMPA"
                     /note="The ligand-binding domain of the AMPA
                     (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic
                     acid) subtypes of ionotropic glutamate receptors, a member
                     of the type 2 periplasmic binding fold protein
                     superfamily; cd13715"
                     /db_xref="CDD:270433"
     Site            order(455,459,506..507,510,515..518,755,773..774,777..782,
                     784,787)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:270433"
     Site            order(474,502..504,509,676,679..681,730..731,734,758)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:270433"
     Site            order(517..521,777,780,785..786,789)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:270433"
     CDS             1..818
                     /gene="GRIA3"
                     /coded_by="XM_054075378.1:152..2608"
                     /db_xref="GeneID:104068496"
ORIGIN      
        1 mgqsaprtll lllagllgda lagfpntisi gglfmrntvq ehsafrfavq lyntnqntte
       61 kpfhlnyhvd hldssnsfsv tnafcsqfsr gvyaifgfyd qmsmntltsf cgalhtsfvt
      121 psfptdadvq fviqmrpalk gailslltyy kwekfvylyd tergfsilqa imeaavqnnw
      181 qvtarsvgsi kdvqefrrii eemdrrqekr ylidcevdri ntileqvvil gkhsrgyhym
      241 lanlgytdiv lervmhggan vtgfqivnne npmvqqflqr wvrlderefp eaknsplkyt
      301 salthdavlv iaeafrylrr qrvdvsrrgs agdclanpav pwsqgidier alkmvqvqgm
      361 tgniqfdtyg rrtnytidvy emkaagsrka gywneyerfv paldllpsnd tssvenrtiv
      421 vttilespyv mykknheqle gneryegycv dlaseiakhv gikyklsivg dgkygardpe
      481 tkiwngmvge lvygradiav apltitlvre evidfskpfm slgisimikk pqkskpgvfs
      541 fldplayeiw mcivfayigv svvlflvsrf spyewhleds neeprdpqnp pdppnefgif
      601 nslwfslgaf mqqgcdispr slsgrivggv wwfftliiis sytanlaafl tvermvspie
      661 saedlakqte iaygtldsgs tkeffrrski avyekmwsym ksaepsvftk ttadgvarvr
      721 kskgkfafll estmneyieq rkpcdtmkvg gnldskgygv atpkgsalrn avnlavlkln
      781 eqglldklkn kwwydkgecg sgggdsknsc kpcsietq
//
LOCUS       XP_009569683             888 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor 3 isoform X4 [Cuculus canorus].
ACCESSION   XP_009569683
VERSION     XP_009569683.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009571388.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..888
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..888
                     /product="glutamate receptor 3 isoform X4"
                     /calculated_mol_wt=99885
     Region          29..401
                     /region_name="PBP1_iGluR_AMPA_GluR3"
                     /note="N-terminal leucine-isoleucine-valine binding
                     protein (LIVBP)-like domain of the GluR3 subunit of the
                     AMPA receptor; cd06387"
                     /db_xref="CDD:380610"
     Site            order(76..78,81..82,85,110,113,159,169,172..173,176..177,
                     184,186,202,333..335,337,339)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:380610"
     Site            order(77..78,85,104..106,109..110,114,159,165,169,
                     172..173,175..177,179,182..183,185,206,334..338)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:380610"
     Region          416..799
                     /region_name="PBP2_iGluR_AMPA"
                     /note="The ligand-binding domain of the AMPA
                     (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic
                     acid) subtypes of ionotropic glutamate receptors, a member
                     of the type 2 periplasmic binding fold protein
                     superfamily; cd13715"
                     /db_xref="CDD:270433"
     Site            order(455,459,506..507,510,515..518,755,773..774,777..782,
                     784,787)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:270433"
     Site            order(474,502..504,509,676,679..681,730..731,734,758)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:270433"
     Site            order(517..521,777,780,785..786,789)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:270433"
     CDS             1..888
                     /gene="GRIA3"
                     /coded_by="XM_009571388.2:173..2839"
                     /db_xref="GeneID:104068496"
ORIGIN      
        1 mgqsaprtll lllagllgda lagfpntisi gglfmrntvq ehsafrfavq lyntnqntte
       61 kpfhlnyhvd hldssnsfsv tnafcsqfsr gvyaifgfyd qmsmntltsf cgalhtsfvt
      121 psfptdadvq fviqmrpalk gailslltyy kwekfvylyd tergfsilqa imeaavqnnw
      181 qvtarsvgsi kdvqefrrii eemdrrqekr ylidcevdri ntileqvvil gkhsrgyhym
      241 lanlgytdiv lervmhggan vtgfqivnne npmvqqflqr wvrlderefp eaknsplkyt
      301 salthdavlv iaeafrylrr qrvdvsrrgs agdclanpav pwsqgidier alkmvqvqgm
      361 tgniqfdtyg rrtnytidvy emkaagsrka gywneyerfv paldllpsnd tssvenrtiv
      421 vttilespyv mykknheqle gneryegycv dlaseiakhv gikyklsivg dgkygardpe
      481 tkiwngmvge lvygradiav apltitlvre evidfskpfm slgisimikk pqkskpgvfs
      541 fldplayeiw mcivfayigv svvlflvsrf spyewhleds neeprdpqnp pdppnefgif
      601 nslwfslgaf mqqgcdispr slsgrivggv wwfftliiis sytanlaafl tvermvspie
      661 saedlakqte iaygtldsgs tkeffrrski avyekmwsym ksaepsvftk ttadgvarvr
      721 kskgkfafll estmneyieq rkpcdtmkvg gnldskgygv atpkgsalrn avnlavlkln
      781 eqglldklkn kwwydkgecg sgggdskdkt salslsnvag vfyilvgglg lammvalief
      841 cyksraeskr mkltkntqnf kpapatntqn yatyregynv ygtesvki
//
LOCUS       XP_009569684             888 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor 3 isoform X5 [Cuculus canorus].
ACCESSION   XP_009569684
VERSION     XP_009569684.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009571389.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..888
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..888
                     /product="glutamate receptor 3 isoform X5"
                     /calculated_mol_wt=99956
     Region          29..401
                     /region_name="PBP1_iGluR_AMPA_GluR3"
                     /note="N-terminal leucine-isoleucine-valine binding
                     protein (LIVBP)-like domain of the GluR3 subunit of the
                     AMPA receptor; cd06387"
                     /db_xref="CDD:380610"
     Site            order(76..78,81..82,85,110,113,159,169,172..173,176..177,
                     184,186,202,333..335,337,339)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:380610"
     Site            order(77..78,85,104..106,109..110,114,159,165,169,
                     172..173,175..177,179,182..183,185,206,334..338)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:380610"
     Region          416..799
                     /region_name="PBP2_iGluR_AMPA"
                     /note="The ligand-binding domain of the AMPA
                     (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic
                     acid) subtypes of ionotropic glutamate receptors, a member
                     of the type 2 periplasmic binding fold protein
                     superfamily; cd13715"
                     /db_xref="CDD:270433"
     Site            order(455,459,506..507,510,515..518,755,773..774,777..782,
                     784,787)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:270433"
     Site            order(474,502..504,509,676,679..681,730..731,734,758)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:270433"
     Site            order(517..521,777,780,785..786,789)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:270433"
     CDS             1..888
                     /gene="GRIA3"
                     /coded_by="XM_009571389.2:173..2839"
                     /db_xref="GeneID:104068496"
ORIGIN      
        1 mgqsaprtll lllagllgda lagfpntisi gglfmrntvq ehsafrfavq lyntnqntte
       61 kpfhlnyhvd hldssnsfsv tnafcsqfsr gvyaifgfyd qmsmntltsf cgalhtsfvt
      121 psfptdadvq fviqmrpalk gailslltyy kwekfvylyd tergfsilqa imeaavqnnw
      181 qvtarsvgsi kdvqefrrii eemdrrqekr ylidcevdri ntileqvvil gkhsrgyhym
      241 lanlgytdiv lervmhggan vtgfqivnne npmvqqflqr wvrlderefp eaknsplkyt
      301 salthdavlv iaeafrylrr qrvdvsrrgs agdclanpav pwsqgidier alkmvqvqgm
      361 tgniqfdtyg rrtnytidvy emkaagsrka gywneyerfv paldllpsnd tssvenrtiv
      421 vttilespyv mykknheqle gneryegycv dlaseiakhv gikyklsivg dgkygardpe
      481 tkiwngmvge lvygradiav apltitlvre evidfskpfm slgisimikk pqkskpgvfs
      541 fldplayeiw mcivfayigv svvlflvsrf spyewhleds neeprdpqnp pdppnefgif
      601 nslwfslgaf mqqgcdispr slsgrivggv wwfftliiis sytanlaafl tvermvspie
      661 saedlakqte iaygtldsgs tkeffrrski avyekmwsym ksaepsvftk ttadgvarvr
      721 kskgkfafll estmneyieq rkpcdtmkvg gnldskgygv atpkgsalrt pvnlavlkls
      781 eqgildklkn kwwydkgecg akdsgskdkt salslsnvag vfyilvgglg lammvalief
      841 cyksraeskr mkltkntqnf kpapatntqn yatyregynv ygtesvki
//
LOCUS       XP_053931354             810 aa            linear   VRT 09-MAR-2023
DEFINITION  glutamate receptor 3 isoform X6 [Cuculus canorus].
ACCESSION   XP_053931354
VERSION     XP_053931354.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075379.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..810
                     /product="glutamate receptor 3 isoform X6"
                     /calculated_mol_wt=91381
     Region          29..401
                     /region_name="PBP1_iGluR_AMPA_GluR3"
                     /note="N-terminal leucine-isoleucine-valine binding
                     protein (LIVBP)-like domain of the GluR3 subunit of the
                     AMPA receptor; cd06387"
                     /db_xref="CDD:380610"
     Site            order(76..78,81..82,85,110,113,159,169,172..173,176..177,
                     184,186,202,333..335,337,339)
                     /site_type="other"
                     /note="putative tetramer interface [polypeptide binding]"
                     /db_xref="CDD:380610"
     Site            order(77..78,85,104..106,109..110,114,159,165,169,
                     172..173,175..177,179,182..183,185,206,334..338)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:380610"
     Region          416..799
                     /region_name="PBP2_iGluR_AMPA"
                     /note="The ligand-binding domain of the AMPA
                     (alpha-amino-3-hydroxyl-5-methyl-4-isoxazolepropionic
                     acid) subtypes of ionotropic glutamate receptors, a member
                     of the type 2 periplasmic binding fold protein
                     superfamily; cd13715"
                     /db_xref="CDD:270433"
     Site            order(455,459,506..507,510,515..518,755,773..774,777..782,
                     784,787)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:270433"
     Site            order(474,502..504,509,676,679..681,730..731,734,758)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:270433"
     Site            order(517..521,777,780,785..786,789)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:270433"
     CDS             1..810
                     /gene="GRIA3"
                     /coded_by="XM_054075379.1:152..2584"
                     /db_xref="GeneID:104068496"
ORIGIN      
        1 mgqsaprtll lllagllgda lagfpntisi gglfmrntvq ehsafrfavq lyntnqntte
       61 kpfhlnyhvd hldssnsfsv tnafcsqfsr gvyaifgfyd qmsmntltsf cgalhtsfvt
      121 psfptdadvq fviqmrpalk gailslltyy kwekfvylyd tergfsilqa imeaavqnnw
      181 qvtarsvgsi kdvqefrrii eemdrrqekr ylidcevdri ntileqvvil gkhsrgyhym
      241 lanlgytdiv lervmhggan vtgfqivnne npmvqqflqr wvrlderefp eaknsplkyt
      301 salthdavlv iaeafrylrr qrvdvsrrgs agdclanpav pwsqgidier alkmvqvqgm
      361 tgniqfdtyg rrtnytidvy emkaagsrka gywneyerfv paldllpsnd tssvenrtiv
      421 vttilespyv mykknheqle gneryegycv dlaseiakhv gikyklsivg dgkygardpe
      481 tkiwngmvge lvygradiav apltitlvre evidfskpfm slgisimikk pqkskpgvfs
      541 fldplayeiw mcivfayigv svvlflvsrf spyewhleds neeprdpqnp pdppnefgif
      601 nslwfslgaf mqqgcdispr slsgrivggv wwfftliiis sytanlaafl tvermvspie
      661 saedlakqte iaygtldsgs tkeffrrski avyekmwsym ksaepsvftk ttadgvarvr
      721 kskgkfafll estmneyieq rkpcdtmkvg gnldskgygv atpkgsalrt pvnlavlkls
      781 eqgildklkn kwwydkgecg akdsgskvsr
//
LOCUS       XP_053931355             152 aa            linear   VRT 09-MAR-2023
DEFINITION  FUN14 domain-containing protein 2 [Cuculus canorus].
ACCESSION   XP_053931355
VERSION     XP_053931355.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075380.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..152
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..152
                     /product="FUN14 domain-containing protein 2"
                     /calculated_mol_wt=16284
     Region          49..>109
                     /region_name="FUN14"
                     /note="FUN14 family; pfam04930"
                     /db_xref="CDD:461487"
     Region          <95..135
                     /region_name="MobP3"
                     /note="MobP3 family relaxase; cl46050"
                     /db_xref="CDD:480390"
     CDS             1..152
                     /gene="FUNDC2"
                     /coded_by="XM_054075380.1:136..594"
                     /db_xref="GeneID:104069044"
ORIGIN      
        1 magsgggake nsfnvldlae ytknrpwwrk ifapssgssa ekynvatqlv iggvtgwctg
       61 fifqkvgkla atavgggffl lqianhtgyi kvdwklverd vnkakqqlkf hssgnkmppe
      121 vksrvdevii flkknviltg gfaggfllgm as
//
LOCUS       XP_053931356             108 aa            linear   VRT 09-MAR-2023
DEFINITION  protein p13 MTCP-1 [Cuculus canorus].
ACCESSION   XP_053931356
VERSION     XP_053931356.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075381.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..108
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..108
                     /product="protein p13 MTCP-1"
                     /calculated_mol_wt=12237
     Region          1..106
                     /region_name="TCL1_MTCP1"
                     /note="TCL1/MTCP1 family; pfam01840"
                     /db_xref="CDD:460358"
     CDS             1..108
                     /gene="MTCP1"
                     /coded_by="XM_054075381.1:26..352"
                     /db_xref="GeneID:104069009"
ORIGIN      
        1 maegghagtp pvrlwvrrvg vycdehrktw lvaaeeeegm lrariqrvqv plgealrpsq
       61 lppsrlphmw qlsqgeqyrd snsrvweieh hlmlggveel llklvpgd
//
LOCUS       XP_053931357             108 aa            linear   VRT 09-MAR-2023
DEFINITION  protein p13 MTCP-1 [Cuculus canorus].
ACCESSION   XP_053931357
VERSION     XP_053931357.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075382.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..108
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..108
                     /product="protein p13 MTCP-1"
                     /calculated_mol_wt=12237
     Region          1..106
                     /region_name="TCL1_MTCP1"
                     /note="TCL1/MTCP1 family; pfam01840"
                     /db_xref="CDD:460358"
     CDS             1..108
                     /gene="MTCP1"
                     /coded_by="XM_054075382.1:26..352"
                     /db_xref="GeneID:104069009"
ORIGIN      
        1 maegghagtp pvrlwvrrvg vycdehrktw lvaaeeeegm lrariqrvqv plgealrpsq
       61 lppsrlphmw qlsqgeqyrd snsrvweieh hlmlggveel llklvpgd
//
LOCUS       XP_053931358             108 aa            linear   VRT 09-MAR-2023
DEFINITION  protein p13 MTCP-1 [Cuculus canorus].
ACCESSION   XP_053931358
VERSION     XP_053931358.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075383.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..108
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..108
                     /product="protein p13 MTCP-1"
                     /calculated_mol_wt=12237
     Region          1..106
                     /region_name="TCL1_MTCP1"
                     /note="TCL1/MTCP1 family; pfam01840"
                     /db_xref="CDD:460358"
     CDS             1..108
                     /gene="MTCP1"
                     /coded_by="XM_054075383.1:26..352"
                     /db_xref="GeneID:104069009"
ORIGIN      
        1 maegghagtp pvrlwvrrvg vycdehrktw lvaaeeeegm lrariqrvqv plgealrpsq
       61 lppsrlphmw qlsqgeqyrd snsrvweieh hlmlggveel llklvpgd
//
LOCUS       XP_053931359              75 aa            linear   VRT 09-MAR-2023
DEFINITION  cx9C motif-containing protein 4 [Cuculus canorus].
ACCESSION   XP_053931359
VERSION     XP_053931359.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075384.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..75
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..75
                     /product="cx9C motif-containing protein 4"
                     /calculated_mol_wt=8546
     Region          6..53
                     /region_name="MTCP1"
                     /note="Mature-T-Cell Proliferation I type; pfam08991"
                     /db_xref="CDD:430360"
     CDS             1..75
                     /gene="CMC4"
                     /coded_by="XM_054075384.1:150..377"
                     /db_xref="GeneID:104069008"
ORIGIN      
        1 msqkdpcqkq aceiqkclqv nnyveskcet vlqemrkcca rypkgrsicc sgfekeerer
       61 ekvkstsegi sprpq
//
LOCUS       XP_053931360              75 aa            linear   VRT 09-MAR-2023
DEFINITION  cx9C motif-containing protein 4 [Cuculus canorus].
ACCESSION   XP_053931360
VERSION     XP_053931360.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075385.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..75
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..75
                     /product="cx9C motif-containing protein 4"
                     /calculated_mol_wt=8546
     Region          6..53
                     /region_name="MTCP1"
                     /note="Mature-T-Cell Proliferation I type; pfam08991"
                     /db_xref="CDD:430360"
     CDS             1..75
                     /gene="CMC4"
                     /coded_by="XM_054075385.1:63..290"
                     /db_xref="GeneID:104069008"
ORIGIN      
        1 msqkdpcqkq aceiqkclqv nnyveskcet vlqemrkcca rypkgrsicc sgfekeerer
       61 ekvkstsegi sprpq
//
LOCUS       XP_053931361              75 aa            linear   VRT 09-MAR-2023
DEFINITION  cx9C motif-containing protein 4 [Cuculus canorus].
ACCESSION   XP_053931361
VERSION     XP_053931361.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075386.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..75
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..75
                     /product="cx9C motif-containing protein 4"
                     /calculated_mol_wt=8546
     Region          6..53
                     /region_name="MTCP1"
                     /note="Mature-T-Cell Proliferation I type; pfam08991"
                     /db_xref="CDD:430360"
     CDS             1..75
                     /gene="CMC4"
                     /coded_by="XM_054075386.1:141..368"
                     /db_xref="GeneID:104069008"
ORIGIN      
        1 msqkdpcqkq aceiqkclqv nnyveskcet vlqemrkcca rypkgrsicc sgfekeerer
       61 ekvkstsegi sprpq
//
LOCUS       XP_053931362              75 aa            linear   VRT 09-MAR-2023
DEFINITION  cx9C motif-containing protein 4 [Cuculus canorus].
ACCESSION   XP_053931362
VERSION     XP_053931362.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075387.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..75
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..75
                     /product="cx9C motif-containing protein 4"
                     /calculated_mol_wt=8546
     Region          6..53
                     /region_name="MTCP1"
                     /note="Mature-T-Cell Proliferation I type; pfam08991"
                     /db_xref="CDD:430360"
     CDS             1..75
                     /gene="CMC4"
                     /coded_by="XM_054075387.1:140..367"
                     /db_xref="GeneID:104069008"
ORIGIN      
        1 msqkdpcqkq aceiqkclqv nnyveskcet vlqemrkcca rypkgrsicc sgfekeerer
       61 ekvkstsegi sprpq
//
LOCUS       XP_053931363            1245 aa            linear   VRT 09-MAR-2023
DEFINITION  protocadherin-11 X-linked isoform X1 [Cuculus canorus].
ACCESSION   XP_053931363
VERSION     XP_053931363.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075388.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1245
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1245
                     /product="protocadherin-11 X-linked isoform X1"
                     /calculated_mol_wt=136944
     Region          27..135
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(32..33,92,94,131,133..134)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          143..261
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(150..151,224,226,257,259..260)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          270..367
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(276..277,332,334,363,365..366)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          383..478
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(388..389,441,443,474,476..477)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          489..582
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(493..494,545,547,578,580..581)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          590..685
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(597..598,648,650,681,683..684)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          697..788
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          791..991
                     /region_name="Protocadherin"
                     /note="pfam08374"
                     /db_xref="CDD:462451"
     CDS             1..1245
                     /gene="PCDH11X"
                     /coded_by="XM_054075388.1:334..4071"
                     /db_xref="GeneID:104054278"
ORIGIN      
        1 mdllsgtyll avllacivfq sgaqeknytv reelpenvli gnllkdlnlt ldpdvplssp
       61 lqfklvyktg dvplvrveen tgeifttanr idreklcsgi fsenrcfyev evavlpdevf
      121 rlvkirflie dindnaplfp stvinisipe ntainsrysv psaidpdigv ngiqhyellk
      181 pktapkrtfg sitndqgqnv fgldiietpe gdkwpqlivq qildreqkdt yvmkikvedg
      241 gnpprsstai lqvtvtdvnd nrpvfkendi evsvpenapv gtsvsqlhat dadlgsnaqi
      301 hfyfsnqisg lakrlfaidn atglitirep ldreespvhk ltvlasdgss tpsratvtvn
      361 vtdindnvps idtryiinpv ngtvllseka plntkialit vmdkdadlng kvtcftdhdv
      421 pfrlkpvfdn qflletatfl dyeatreyai kivasdsgkp plnqsamlli kikdendnap
      481 vftqpiigls ipennapgtq ltkisatdad sgrnaeisyi lgsdappifn ldrrtgilta
      541 vrkldrekqd rysftvlakd ngmpplqtna tvtvsvldqn dnspafthne ynfyvpenlp
      601 mygtvglitv tdadsgenaa vtlsilngrd nfiidpltgv irpnitfdre qqgsytfqvk
      661 avdggrvqrs stakvtinvv dvndnrpvfv ipssnysyel vptstspgav vtkvfavdnd
      721 tgmnaelrys iiggnsrglf tidqltgnit lkekvitsdh glhrlvikvn dlgqpeslyt
      781 ialvhlfvne tvtnssyiqe lvrrnmetpv gqnigdgdit pqtndyvkii iaiiagtmtv
      841 ilvifvtalv rcrqtprhkv vqknkqsgew vspnqenrqi kkkkkkkkrs pkslllnfvt
      901 ieeskpddpg hehingtldi pveleeqtmg kynwattptt fkpdspdlak hyksaspqpt
      961 fqikpetpvp pkkhhviqel pldntfvvgc dslskcssss sdpysvsecs cqggfktpgp
     1021 ihtrqhtkem grpqtplket tlepwtqpqp qrrvtfhlpd gsqescsdsg lgdheptsga
     1081 stshplplgf pqeeyyeqas pnsrtegdgn sdpestievn lqkalaease tctqeclilg
     1141 hsdncwmpps ltqyqqsntp lpsfgfqqgw grgaraegrh tlgrplpkdd tdkgqggprp
     1201 qfyntcerlc asedpvkvip lanfaashpp svsgssttfi hehql
//
LOCUS       XP_053931364            1245 aa            linear   VRT 09-MAR-2023
DEFINITION  protocadherin-11 X-linked isoform X1 [Cuculus canorus].
ACCESSION   XP_053931364
VERSION     XP_053931364.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075389.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1245
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1245
                     /product="protocadherin-11 X-linked isoform X1"
                     /calculated_mol_wt=136944
     Region          27..135
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(32..33,92,94,131,133..134)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          143..261
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(150..151,224,226,257,259..260)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          270..367
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(276..277,332,334,363,365..366)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          383..478
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(388..389,441,443,474,476..477)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          489..582
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(493..494,545,547,578,580..581)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          590..685
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(597..598,648,650,681,683..684)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          697..788
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          791..991
                     /region_name="Protocadherin"
                     /note="pfam08374"
                     /db_xref="CDD:462451"
     CDS             1..1245
                     /gene="PCDH11X"
                     /coded_by="XM_054075389.1:842..4579"
                     /db_xref="GeneID:104054278"
ORIGIN      
        1 mdllsgtyll avllacivfq sgaqeknytv reelpenvli gnllkdlnlt ldpdvplssp
       61 lqfklvyktg dvplvrveen tgeifttanr idreklcsgi fsenrcfyev evavlpdevf
      121 rlvkirflie dindnaplfp stvinisipe ntainsrysv psaidpdigv ngiqhyellk
      181 pktapkrtfg sitndqgqnv fgldiietpe gdkwpqlivq qildreqkdt yvmkikvedg
      241 gnpprsstai lqvtvtdvnd nrpvfkendi evsvpenapv gtsvsqlhat dadlgsnaqi
      301 hfyfsnqisg lakrlfaidn atglitirep ldreespvhk ltvlasdgss tpsratvtvn
      361 vtdindnvps idtryiinpv ngtvllseka plntkialit vmdkdadlng kvtcftdhdv
      421 pfrlkpvfdn qflletatfl dyeatreyai kivasdsgkp plnqsamlli kikdendnap
      481 vftqpiigls ipennapgtq ltkisatdad sgrnaeisyi lgsdappifn ldrrtgilta
      541 vrkldrekqd rysftvlakd ngmpplqtna tvtvsvldqn dnspafthne ynfyvpenlp
      601 mygtvglitv tdadsgenaa vtlsilngrd nfiidpltgv irpnitfdre qqgsytfqvk
      661 avdggrvqrs stakvtinvv dvndnrpvfv ipssnysyel vptstspgav vtkvfavdnd
      721 tgmnaelrys iiggnsrglf tidqltgnit lkekvitsdh glhrlvikvn dlgqpeslyt
      781 ialvhlfvne tvtnssyiqe lvrrnmetpv gqnigdgdit pqtndyvkii iaiiagtmtv
      841 ilvifvtalv rcrqtprhkv vqknkqsgew vspnqenrqi kkkkkkkkrs pkslllnfvt
      901 ieeskpddpg hehingtldi pveleeqtmg kynwattptt fkpdspdlak hyksaspqpt
      961 fqikpetpvp pkkhhviqel pldntfvvgc dslskcssss sdpysvsecs cqggfktpgp
     1021 ihtrqhtkem grpqtplket tlepwtqpqp qrrvtfhlpd gsqescsdsg lgdheptsga
     1081 stshplplgf pqeeyyeqas pnsrtegdgn sdpestievn lqkalaease tctqeclilg
     1141 hsdncwmpps ltqyqqsntp lpsfgfqqgw grgaraegrh tlgrplpkdd tdkgqggprp
     1201 qfyntcerlc asedpvkvip lanfaashpp svsgssttfi hehql
//
LOCUS       XP_053931365            1052 aa            linear   VRT 09-MAR-2023
DEFINITION  protocadherin-11 X-linked isoform X2 [Cuculus canorus].
ACCESSION   XP_053931365
VERSION     XP_053931365.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075390.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1052
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1052
                     /product="protocadherin-11 X-linked isoform X2"
                     /calculated_mol_wt=116069
     Region          28..99
                     /region_name="Cadherin_2"
                     /note="Cadherin-like; pfam08266"
                     /db_xref="CDD:462413"
     Region          143..261
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(150..151,224,226,257,259..260)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          270..367
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(276..277,332,334,363,365..366)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          383..478
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(388..389,441,443,474,476..477)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          489..582
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(493..494,545,547,578,580..581)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          590..685
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(597..598,648,650,681,683..684)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          697..788
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          791..991
                     /region_name="Protocadherin"
                     /note="pfam08374"
                     /db_xref="CDD:462451"
     CDS             1..1052
                     /gene="PCDH11X"
                     /coded_by="XM_054075390.1:332..3490"
                     /db_xref="GeneID:104054278"
ORIGIN      
        1 mdllsgtyll avllacivfq sgaqeknytv reelpenvli gnllkdlnlt ldpdvplssp
       61 lqfklvyktg dvplvrveen tgeifttanr idreklcsgi fsenrcfyev evavlpdevf
      121 rlvkirflie dindnaplfp stvinisipe ntainsrysv psaidpdigv ngiqhyellk
      181 pktapkrtfg sitndqgqnv fgldiietpe gdkwpqlivq qildreqkdt yvmkikvedg
      241 gnpprsstai lqvtvtdvnd nrpvfkendi evsvpenapv gtsvsqlhat dadlgsnaqi
      301 hfyfsnqisg lakrlfaidn atglitirep ldreespvhk ltvlasdgss tpsratvtvn
      361 vtdindnvps idtryiinpv ngtvllseka plntkialit vmdkdadlng kvtcftdhdv
      421 pfrlkpvfdn qflletatfl dyeatreyai kivasdsgkp plnqsamlli kikdendnap
      481 vftqpiigls ipennapgtq ltkisatdad sgrnaeisyi lgsdappifn ldrrtgilta
      541 vrkldrekqd rysftvlakd ngmpplqtna tvtvsvldqn dnspafthne ynfyvpenlp
      601 mygtvglitv tdadsgenaa vtlsilngrd nfiidpltgv irpnitfdre qqgsytfqvk
      661 avdggrvqrs stakvtinvv dvndnrpvfv ipssnysyel vptstspgav vtkvfavdnd
      721 tgmnaelrys iiggnsrglf tidqltgnit lkekvitsdh glhrlvikvn dlgqpeslyt
      781 ialvhlfvne tvtnssyiqe lvrrnmetpv gqnigdgdit pqtndyvkii iaiiagtmtv
      841 ilvifvtalv rcrqtprhkv vqknkqsgew vspnqenrqi kkkkkkkkrs pkslllnfvt
      901 ieeskpddpg hehingtldi pveleeqtmg kynwattptt fkpdspdlak hyksaspqpt
      961 fqikpetpvp pkkhhviqel pldntfvvgc dslskcssss sdpysvsecs cqggfktpgp
     1021 ihtrqhtkem grpqtplket tlepwtqpql lk
//
LOCUS       XP_053931366            1037 aa            linear   VRT 09-MAR-2023
DEFINITION  protocadherin-11 X-linked isoform X3 [Cuculus canorus].
ACCESSION   XP_053931366
VERSION     XP_053931366.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075391.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1037
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1037
                     /product="protocadherin-11 X-linked isoform X3"
                     /calculated_mol_wt=114495
     Region          28..99
                     /region_name="Cadherin_2"
                     /note="Cadherin-like; pfam08266"
                     /db_xref="CDD:462413"
     Region          143..261
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(150..151,224,226,257,259..260)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          270..367
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(276..277,332,334,363,365..366)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          383..478
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(388..389,441,443,474,476..477)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          489..582
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(493..494,545,547,578,580..581)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          590..685
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(597..598,648,650,681,683..684)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          697..788
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          791..991
                     /region_name="Protocadherin"
                     /note="pfam08374"
                     /db_xref="CDD:462451"
     CDS             1..1037
                     /gene="PCDH11X"
                     /coded_by="XM_054075391.1:332..3445"
                     /db_xref="GeneID:104054278"
ORIGIN      
        1 mdllsgtyll avllacivfq sgaqeknytv reelpenvli gnllkdlnlt ldpdvplssp
       61 lqfklvyktg dvplvrveen tgeifttanr idreklcsgi fsenrcfyev evavlpdevf
      121 rlvkirflie dindnaplfp stvinisipe ntainsrysv psaidpdigv ngiqhyellk
      181 pktapkrtfg sitndqgqnv fgldiietpe gdkwpqlivq qildreqkdt yvmkikvedg
      241 gnpprsstai lqvtvtdvnd nrpvfkendi evsvpenapv gtsvsqlhat dadlgsnaqi
      301 hfyfsnqisg lakrlfaidn atglitirep ldreespvhk ltvlasdgss tpsratvtvn
      361 vtdindnvps idtryiinpv ngtvllseka plntkialit vmdkdadlng kvtcftdhdv
      421 pfrlkpvfdn qflletatfl dyeatreyai kivasdsgkp plnqsamlli kikdendnap
      481 vftqpiigls ipennapgtq ltkisatdad sgrnaeisyi lgsdappifn ldrrtgilta
      541 vrkldrekqd rysftvlakd ngmpplqtna tvtvsvldqn dnspafthne ynfyvpenlp
      601 mygtvglitv tdadsgenaa vtlsilngrd nfiidpltgv irpnitfdre qqgsytfqvk
      661 avdggrvqrs stakvtinvv dvndnrpvfv ipssnysyel vptstspgav vtkvfavdnd
      721 tgmnaelrys iiggnsrglf tidqltgnit lkekvitsdh glhrlvikvn dlgqpeslyt
      781 ialvhlfvne tvtnssyiqe lvrrnmetpv gqnigdgdit pqtndyvkii iaiiagtmtv
      841 ilvifvtalv rcrqtprhkv vqknkqsgew vspnqenrqi kkkkkkkkrs pkslllnfvt
      901 ieeskpddpg hehingtldi pveleeqtmg kynwattptt fkpdspdlak hyksaspqpt
      961 fqikpetpvp pkkhhviqel pldntfvvgc dslskcssss sdpysvsecs cqggfktpgp
     1021 ihtrqkktei hiwrkef
//
LOCUS       XP_053931367            1037 aa            linear   VRT 09-MAR-2023
DEFINITION  protocadherin-11 X-linked isoform X3 [Cuculus canorus].
ACCESSION   XP_053931367
VERSION     XP_053931367.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075392.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1037
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1037
                     /product="protocadherin-11 X-linked isoform X3"
                     /calculated_mol_wt=114495
     Region          28..99
                     /region_name="Cadherin_2"
                     /note="Cadherin-like; pfam08266"
                     /db_xref="CDD:462413"
     Region          143..261
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(150..151,224,226,257,259..260)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          270..367
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(276..277,332,334,363,365..366)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          383..478
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(388..389,441,443,474,476..477)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          489..582
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(493..494,545,547,578,580..581)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          590..685
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(597..598,648,650,681,683..684)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          697..788
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          791..991
                     /region_name="Protocadherin"
                     /note="pfam08374"
                     /db_xref="CDD:462451"
     CDS             1..1037
                     /gene="PCDH11X"
                     /coded_by="XM_054075392.1:332..3445"
                     /db_xref="GeneID:104054278"
ORIGIN      
        1 mdllsgtyll avllacivfq sgaqeknytv reelpenvli gnllkdlnlt ldpdvplssp
       61 lqfklvyktg dvplvrveen tgeifttanr idreklcsgi fsenrcfyev evavlpdevf
      121 rlvkirflie dindnaplfp stvinisipe ntainsrysv psaidpdigv ngiqhyellk
      181 pktapkrtfg sitndqgqnv fgldiietpe gdkwpqlivq qildreqkdt yvmkikvedg
      241 gnpprsstai lqvtvtdvnd nrpvfkendi evsvpenapv gtsvsqlhat dadlgsnaqi
      301 hfyfsnqisg lakrlfaidn atglitirep ldreespvhk ltvlasdgss tpsratvtvn
      361 vtdindnvps idtryiinpv ngtvllseka plntkialit vmdkdadlng kvtcftdhdv
      421 pfrlkpvfdn qflletatfl dyeatreyai kivasdsgkp plnqsamlli kikdendnap
      481 vftqpiigls ipennapgtq ltkisatdad sgrnaeisyi lgsdappifn ldrrtgilta
      541 vrkldrekqd rysftvlakd ngmpplqtna tvtvsvldqn dnspafthne ynfyvpenlp
      601 mygtvglitv tdadsgenaa vtlsilngrd nfiidpltgv irpnitfdre qqgsytfqvk
      661 avdggrvqrs stakvtinvv dvndnrpvfv ipssnysyel vptstspgav vtkvfavdnd
      721 tgmnaelrys iiggnsrglf tidqltgnit lkekvitsdh glhrlvikvn dlgqpeslyt
      781 ialvhlfvne tvtnssyiqe lvrrnmetpv gqnigdgdit pqtndyvkii iaiiagtmtv
      841 ilvifvtalv rcrqtprhkv vqknkqsgew vspnqenrqi kkkkkkkkrs pkslllnfvt
      901 ieeskpddpg hehingtldi pveleeqtmg kynwattptt fkpdspdlak hyksaspqpt
      961 fqikpetpvp pkkhhviqel pldntfvvgc dslskcssss sdpysvsecs cqggfktpgp
     1021 ihtrqkktei hiwrkef
//
LOCUS       XP_053931368            1026 aa            linear   VRT 09-MAR-2023
DEFINITION  protocadherin-11 X-linked isoform X4 [Cuculus canorus].
ACCESSION   XP_053931368
VERSION     XP_053931368.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075393.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1026
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1026
                     /product="protocadherin-11 X-linked isoform X4"
                     /calculated_mol_wt=113011
     Region          28..99
                     /region_name="Cadherin_2"
                     /note="Cadherin-like; pfam08266"
                     /db_xref="CDD:462413"
     Region          143..261
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(150..151,224,226,257,259..260)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          270..367
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(276..277,332,334,363,365..366)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          383..478
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(388..389,441,443,474,476..477)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          489..582
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(493..494,545,547,578,580..581)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          590..685
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Site            order(597..598,648,650,681,683..684)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:206637"
     Region          697..788
                     /region_name="Cadherin_repeat"
                     /note="Cadherin tandem repeat domain; cd11304"
                     /db_xref="CDD:206637"
     Region          791..991
                     /region_name="Protocadherin"
                     /note="pfam08374"
                     /db_xref="CDD:462451"
     CDS             1..1026
                     /gene="PCDH11X"
                     /coded_by="XM_054075393.1:332..3412"
                     /db_xref="GeneID:104054278"
ORIGIN      
        1 mdllsgtyll avllacivfq sgaqeknytv reelpenvli gnllkdlnlt ldpdvplssp
       61 lqfklvyktg dvplvrveen tgeifttanr idreklcsgi fsenrcfyev evavlpdevf
      121 rlvkirflie dindnaplfp stvinisipe ntainsrysv psaidpdigv ngiqhyellk
      181 pktapkrtfg sitndqgqnv fgldiietpe gdkwpqlivq qildreqkdt yvmkikvedg
      241 gnpprsstai lqvtvtdvnd nrpvfkendi evsvpenapv gtsvsqlhat dadlgsnaqi
      301 hfyfsnqisg lakrlfaidn atglitirep ldreespvhk ltvlasdgss tpsratvtvn
      361 vtdindnvps idtryiinpv ngtvllseka plntkialit vmdkdadlng kvtcftdhdv
      421 pfrlkpvfdn qflletatfl dyeatreyai kivasdsgkp plnqsamlli kikdendnap
      481 vftqpiigls ipennapgtq ltkisatdad sgrnaeisyi lgsdappifn ldrrtgilta
      541 vrkldrekqd rysftvlakd ngmpplqtna tvtvsvldqn dnspafthne ynfyvpenlp
      601 mygtvglitv tdadsgenaa vtlsilngrd nfiidpltgv irpnitfdre qqgsytfqvk
      661 avdggrvqrs stakvtinvv dvndnrpvfv ipssnysyel vptstspgav vtkvfavdnd
      721 tgmnaelrys iiggnsrglf tidqltgnit lkekvitsdh glhrlvikvn dlgqpeslyt
      781 ialvhlfvne tvtnssyiqe lvrrnmetpv gqnigdgdit pqtndyvkii iaiiagtmtv
      841 ilvifvtalv rcrqtprhkv vqknkqsgew vspnqenrqi kkkkkkkkrs pkslllnfvt
      901 ieeskpddpg hehingtldi pveleeqtmg kynwattptt fkpdspdlak hyksaspqpt
      961 fqikpetpvp pkkhhviqel pldntfvvgc dslskcssss sdpysvsecs cqggfktpgp
     1021 ihtrql
//
LOCUS       XP_053931369            1635 aa            linear   VRT 09-MAR-2023
DEFINITION  THO complex subunit 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931369
VERSION     XP_053931369.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075394.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1635
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1635
                     /product="THO complex subunit 2 isoform X1"
                     /calculated_mol_wt=187092
     Region          8..577
                     /region_name="THOC2_N"
                     /note="THO complex subunit 2 N-terminus; pfam16134"
                     /db_xref="CDD:465032"
     Region          579..653
                     /region_name="Thoc2"
                     /note="Transcription- and export-related complex subunit;
                     pfam11732"
                     /db_xref="CDD:463334"
     Region          885..1184
                     /region_name="Tho2"
                     /note="Transcription factor/nuclear export subunit protein
                     2; pfam11262"
                     /db_xref="CDD:463251"
     Region          <1488..>1566
                     /region_name="TCP2"
                     /note="Protein TCP2; Provisional; cl23822"
                     /db_xref="CDD:474070"
     CDS             1..1635
                     /gene="THOC2"
                     /coded_by="XM_054075394.1:114..5021"
                     /db_xref="GeneID:104068500"
ORIGIN      
        1 maallpaewi knwekggkne fvqlcrtlse nkshdnvlfr diqqalyela yhvvrgnlkh
       61 dqasnvlgdv iefredmpsi ladvfcildi etscleeksk rdhftqlvla clylvsdtvl
      121 kerldpetle slglikqsqq fnqksvkikt klfykqqkfn llreenegya kliaelgqdl
      181 sgnitsdlil eniksligcf nldpnrvldi ilevyecrpe yddffvplie symymcepqt
      241 lchilgfkfk fyqdpsgetp sslyrvaavl lqhnlidled lyvhllpgdn aiieehkrei
      301 veakqivrkl tmvvlssekt eekekekeke eektekppdn qklglleall kigdwqhaqs
      361 imdqmppfya tshkpiaial cqlvhvtiep lyrrvgvpkg akgspvaslp nkrapkqads
      421 fedlrkevfn mlcylgphls hdpilfakvv rlgkafmkev gtvkkfisdr vvkfqsdgsk
      481 qedkekmevl fscllsitdq vllpslslmd cnacmseelw gmfktfpyqy ryrlygqwkn
      541 dtynshpllv kvkaqtidra kyimkrltke nvkpsgrqig klshsnptil fdyilsqiqk
      601 ydnlitpvvd slkyltslny dvlayciiea lanpekermk hddttisswl qslasfcgav
      661 frkypielag llqyvanqlk agksfdllil kevvqkmagi eiteemtmeq leamtggeql
      721 kaeggyfgqi rntkkssqrl kdalldhdla lplcllmaqq rngvifqegg ekhlklvgkl
      781 ydqchdtlvq fggflasnls tedyikrvps idvlcnefht phdaafflsr pmyahhissk
      841 ydelkkaekg nkqqhkvhky itscelvmap vhdavislhl pkvwddispq fyatfwsltm
      901 ydlavphssy drevnklkvq mkaiddnqem ppnkkkkeke rctalqdkll eeekkqlehv
      961 qrvlqrlkle kdnwllakst knetitkflq lcifprcifs aidavycahf velvhqqktp
     1021 nfstllcydr vfsdiiytva scteneasry grflccmlet vtrwhsdrvi yekecgnypg
     1081 fltilratgf dggnkadqld yenfrhvvhk whykltkasv hcletgeyth irnilivltk
     1141 ilpwypkvln lgqalerrvh kicqeekekr pdlyalamgy sgqlksrkpf mipenefhhk
     1201 dpparnavaa tvqngpggag mptsltintv rleegtteet dklkeksqgv vkvinkavna
     1261 apkvttsngn sasnskiike kddkeksgke kdkekkektp aatpemkalg kdgkdkpkee
     1321 rvnkddkare ikektpksdk ekekvkkeek askeeksktv vtivesksaa ekerekepsr
     1381 erdvakemks kenvkggekm pvagslkspv prsetseser eqkrrkvdth sspshsstvk
     1441 gtamlpkvpl vsenysslrv isihflqdni nelkdssakh yinhttptls kskerevekk
     1501 dldksrersr erekkdeker kdrkrdhsns dreipqdstk rrkeengttg sskhsksesp
     1561 sdsprlneke keknkskssg kekgdsikae kmeksssgsk kesrhdkekt ekkekrdstg
     1621 gkeekkhhks sdkhr
//
LOCUS       XP_053931370            1621 aa            linear   VRT 09-MAR-2023
DEFINITION  THO complex subunit 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931370
VERSION     XP_053931370.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075395.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1621
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1621
                     /product="THO complex subunit 2 isoform X2"
                     /calculated_mol_wt=185534
     Region          8..563
                     /region_name="THOC2_N"
                     /note="THO complex subunit 2 N-terminus; pfam16134"
                     /db_xref="CDD:465032"
     Region          565..639
                     /region_name="Thoc2"
                     /note="Transcription- and export-related complex subunit;
                     pfam11732"
                     /db_xref="CDD:463334"
     Region          871..1170
                     /region_name="Tho2"
                     /note="Transcription factor/nuclear export subunit protein
                     2; pfam11262"
                     /db_xref="CDD:463251"
     Region          <1474..>1552
                     /region_name="TCP2"
                     /note="Protein TCP2; Provisional; cl23822"
                     /db_xref="CDD:474070"
     CDS             1..1621
                     /gene="THOC2"
                     /coded_by="XM_054075395.1:113..4978"
                     /db_xref="GeneID:104068500"
ORIGIN      
        1 maallpaewi knwekggkne fvqlcrtlse nkshdnvlfr diqqalyela yhvvrgnlkh
       61 dqasnvlgdv iefredmpsi ladvfcildi etscleeksk rdhftqlvla clylvsdtvl
      121 kerldpetle slglikqsqq fnqksvkikt klfykqqkfn llreenegya kliaelgqdl
      181 sgnitsdlil eniksligcf nldpnrvldi ilevyecrpe yddffvplie symymcepqt
      241 lchilgfkfk fyqdpsgetp sslyrvaavl lqhnlidled lyvhllpgdn aiieehkrei
      301 veakqivrkl tmvvlssekt eekekekeke eektekppdn qklglleall kigdwqhaqs
      361 imdqmppfya tshkpiaial cqlvhvtiep lyrrvgvpkg akgspvaslp nkrapkqads
      421 fedlrkevfn mlcylgphls hdpilfakvv rlgkafmkef qsdgskqedk ekmevlfscl
      481 lsitdqvllp slslmdcnac mseelwgmfk tfpyqyryrl ygqwkndtyn shpllvkvka
      541 qtidrakyim krltkenvkp sgrqigklsh snptilfdyi lsqiqkydnl itpvvdslky
      601 ltslnydvla yciiealanp ekermkhddt tisswlqsla sfcgavfrky pielagllqy
      661 vanqlkagks fdllilkevv qkmagieite emtmeqleam tggeqlkaeg gyfgqirntk
      721 kssqrlkdal ldhdlalplc llmaqqrngv ifqeggekhl klvgklydqc hdtlvqfggf
      781 lasnlstedy ikrvpsidvl cnefhtphda afflsrpmya hhisskydel kkaekgnkqq
      841 hkvhkyitsc elvmapvhda vislhlpkvw ddispqfyat fwsltmydla vphssydrev
      901 nklkvqmkai ddnqemppnk kkkekercta lqdklleeek kqlehvqrvl qrlklekdnw
      961 llakstknet itkflqlcif prcifsaida vycahfvelv hqqktpnfst llcydrvfsd
     1021 iiytvascte neasrygrfl ccmletvtrw hsdrviyeke cgnypgflti lratgfdggn
     1081 kadqldyenf rhvvhkwhyk ltkasvhcle tgeythirni livltkilpw ypkvlnlgqa
     1141 lerrvhkicq eekekrpdly alamgysgql ksrkpfmipe nefhhkdppa rnavaatvqn
     1201 gpggagmpts ltintvrlee gtteetdklk eksqgvvkvi nkavnaapkv ttsngnsasn
     1261 skiikekddk eksgkekdke kkektpaatp emkalgkdgk dkpkeervnk ddkareikek
     1321 tpksdkekek vkkeekaske eksktvvtiv esksaaeker ekepsrerdv akemkskenv
     1381 kggekmpvag slkspvprse tsesereqkr rkvdthssps hsstvkgtam lpkvplvsen
     1441 ysslrvisih flqdninelk dssakhyinh ttptlskske revekkdldk srersrerek
     1501 kdekerkdrk rdhsnsdrei pqdstkrrke engttgsskh sksespsdsp rlnekekekn
     1561 kskssgkekg dsikaekmek sssgskkesr hdkektekke krdstggkee kkhhkssdkh
     1621 r
//
LOCUS       XP_053931371            1608 aa            linear   VRT 09-MAR-2023
DEFINITION  THO complex subunit 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931371
VERSION     XP_053931371.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075396.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1608
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1608
                     /product="THO complex subunit 2 isoform X3"
                     /calculated_mol_wt=184110
     Region          8..577
                     /region_name="THOC2_N"
                     /note="THO complex subunit 2 N-terminus; pfam16134"
                     /db_xref="CDD:465032"
     Region          579..653
                     /region_name="Thoc2"
                     /note="Transcription- and export-related complex subunit;
                     pfam11732"
                     /db_xref="CDD:463334"
     Region          885..1184
                     /region_name="Tho2"
                     /note="Transcription factor/nuclear export subunit protein
                     2; pfam11262"
                     /db_xref="CDD:463251"
     Region          <1314..>1536
                     /region_name="Caldesmon"
                     /note="pfam02029"
                     /db_xref="CDD:460421"
     Region          1406..1506
                     /region_name="PRP38_assoc"
                     /note="Pre-mRNA-splicing factor 38-associated hydrophilic
                     C-term; pfam12871"
                     /db_xref="CDD:463734"
     CDS             1..1608
                     /gene="THOC2"
                     /coded_by="XM_054075396.1:113..4939"
                     /db_xref="GeneID:104068500"
ORIGIN      
        1 maallpaewi knwekggkne fvqlcrtlse nkshdnvlfr diqqalyela yhvvrgnlkh
       61 dqasnvlgdv iefredmpsi ladvfcildi etscleeksk rdhftqlvla clylvsdtvl
      121 kerldpetle slglikqsqq fnqksvkikt klfykqqkfn llreenegya kliaelgqdl
      181 sgnitsdlil eniksligcf nldpnrvldi ilevyecrpe yddffvplie symymcepqt
      241 lchilgfkfk fyqdpsgetp sslyrvaavl lqhnlidled lyvhllpgdn aiieehkrei
      301 veakqivrkl tmvvlssekt eekekekeke eektekppdn qklglleall kigdwqhaqs
      361 imdqmppfya tshkpiaial cqlvhvtiep lyrrvgvpkg akgspvaslp nkrapkqads
      421 fedlrkevfn mlcylgphls hdpilfakvv rlgkafmkev gtvkkfisdr vvkfqsdgsk
      481 qedkekmevl fscllsitdq vllpslslmd cnacmseelw gmfktfpyqy ryrlygqwkn
      541 dtynshpllv kvkaqtidra kyimkrltke nvkpsgrqig klshsnptil fdyilsqiqk
      601 ydnlitpvvd slkyltslny dvlayciiea lanpekermk hddttisswl qslasfcgav
      661 frkypielag llqyvanqlk agksfdllil kevvqkmagi eiteemtmeq leamtggeql
      721 kaeggyfgqi rntkkssqrl kdalldhdla lplcllmaqq rngvifqegg ekhlklvgkl
      781 ydqchdtlvq fggflasnls tedyikrvps idvlcnefht phdaafflsr pmyahhissk
      841 ydelkkaekg nkqqhkvhky itscelvmap vhdavislhl pkvwddispq fyatfwsltm
      901 ydlavphssy drevnklkvq mkaiddnqem ppnkkkkeke rctalqdkll eeekkqlehv
      961 qrvlqrlkle kdnwllakst knetitkflq lcifprcifs aidavycahf velvhqqktp
     1021 nfstllcydr vfsdiiytva scteneasry grflccmlet vtrwhsdrvi yekecgnypg
     1081 fltilratgf dggnkadqld yenfrhvvhk whykltkasv hcletgeyth irnilivltk
     1141 ilpwypkvln lgqalerrvh kicqeekekr pdlyalamgy sgqlksrkpf mipenefhhk
     1201 dpparnavaa tvqngpggag mptsltintv rleegtteet dklkeksqgv vkvinkavna
     1261 apkvttsngn sasnskiike kddkeksgke kdkekkektp aatpemkalg kdgkdkpkee
     1321 rvnkddkare ikektpksdk ekekvkkeek askeeksktv vtivesksaa ekerekepsr
     1381 erdvakemks kenvkggekm pvagslkspv prsetseser eqkrrkvdth sspshsstvk
     1441 dninelkdss akhyinhttp tlskskerev ekkdldksre rsrerekkde kerkdrkrdh
     1501 snsdreipqd stkrrkeeng ttgsskhsks espsdsprln ekekeknksk ssgkekgdsi
     1561 kaekmeksss gskkesrhdk ektekkekrd stggkeekkh hkssdkhr
//
LOCUS       XP_053931372            1594 aa            linear   VRT 09-MAR-2023
DEFINITION  THO complex subunit 2 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931372
VERSION     XP_053931372.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075397.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1594
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1594
                     /product="THO complex subunit 2 isoform X4"
                     /calculated_mol_wt=182552
     Region          8..563
                     /region_name="THOC2_N"
                     /note="THO complex subunit 2 N-terminus; pfam16134"
                     /db_xref="CDD:465032"
     Region          565..639
                     /region_name="Thoc2"
                     /note="Transcription- and export-related complex subunit;
                     pfam11732"
                     /db_xref="CDD:463334"
     Region          871..1170
                     /region_name="Tho2"
                     /note="Transcription factor/nuclear export subunit protein
                     2; pfam11262"
                     /db_xref="CDD:463251"
     Region          <1300..>1522
                     /region_name="Caldesmon"
                     /note="pfam02029"
                     /db_xref="CDD:460421"
     Region          1392..1492
                     /region_name="PRP38_assoc"
                     /note="Pre-mRNA-splicing factor 38-associated hydrophilic
                     C-term; pfam12871"
                     /db_xref="CDD:463734"
     CDS             1..1594
                     /gene="THOC2"
                     /coded_by="XM_054075397.1:113..4897"
                     /db_xref="GeneID:104068500"
ORIGIN      
        1 maallpaewi knwekggkne fvqlcrtlse nkshdnvlfr diqqalyela yhvvrgnlkh
       61 dqasnvlgdv iefredmpsi ladvfcildi etscleeksk rdhftqlvla clylvsdtvl
      121 kerldpetle slglikqsqq fnqksvkikt klfykqqkfn llreenegya kliaelgqdl
      181 sgnitsdlil eniksligcf nldpnrvldi ilevyecrpe yddffvplie symymcepqt
      241 lchilgfkfk fyqdpsgetp sslyrvaavl lqhnlidled lyvhllpgdn aiieehkrei
      301 veakqivrkl tmvvlssekt eekekekeke eektekppdn qklglleall kigdwqhaqs
      361 imdqmppfya tshkpiaial cqlvhvtiep lyrrvgvpkg akgspvaslp nkrapkqads
      421 fedlrkevfn mlcylgphls hdpilfakvv rlgkafmkef qsdgskqedk ekmevlfscl
      481 lsitdqvllp slslmdcnac mseelwgmfk tfpyqyryrl ygqwkndtyn shpllvkvka
      541 qtidrakyim krltkenvkp sgrqigklsh snptilfdyi lsqiqkydnl itpvvdslky
      601 ltslnydvla yciiealanp ekermkhddt tisswlqsla sfcgavfrky pielagllqy
      661 vanqlkagks fdllilkevv qkmagieite emtmeqleam tggeqlkaeg gyfgqirntk
      721 kssqrlkdal ldhdlalplc llmaqqrngv ifqeggekhl klvgklydqc hdtlvqfggf
      781 lasnlstedy ikrvpsidvl cnefhtphda afflsrpmya hhisskydel kkaekgnkqq
      841 hkvhkyitsc elvmapvhda vislhlpkvw ddispqfyat fwsltmydla vphssydrev
      901 nklkvqmkai ddnqemppnk kkkekercta lqdklleeek kqlehvqrvl qrlklekdnw
      961 llakstknet itkflqlcif prcifsaida vycahfvelv hqqktpnfst llcydrvfsd
     1021 iiytvascte neasrygrfl ccmletvtrw hsdrviyeke cgnypgflti lratgfdggn
     1081 kadqldyenf rhvvhkwhyk ltkasvhcle tgeythirni livltkilpw ypkvlnlgqa
     1141 lerrvhkicq eekekrpdly alamgysgql ksrkpfmipe nefhhkdppa rnavaatvqn
     1201 gpggagmpts ltintvrlee gtteetdklk eksqgvvkvi nkavnaapkv ttsngnsasn
     1261 skiikekddk eksgkekdke kkektpaatp emkalgkdgk dkpkeervnk ddkareikek
     1321 tpksdkekek vkkeekaske eksktvvtiv esksaaeker ekepsrerdv akemkskenv
     1381 kggekmpvag slkspvprse tsesereqkr rkvdthssps hsstvkdnin elkdssakhy
     1441 inhttptlsk skerevekkd ldksrersre rekkdekerk drkrdhsnsd reipqdstkr
     1501 rkeengttgs skhsksesps dsprlnekek eknkskssgk ekgdsikaek meksssgskk
     1561 esrhdkekte kkekrdstgg keekkhhkss dkhr
//
LOCUS       XP_009559247             467 aa            linear   VRT 09-MAR-2023
DEFINITION  coagulation factor IX [Cuculus canorus].
ACCESSION   XP_009559247
VERSION     XP_009559247.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560952.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009559247.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..467
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..467
                     /product="coagulation factor IX"
                     /calculated_mol_wt=51305
     Region          22..85
                     /region_name="GLA"
                     /note="Domain containing Gla (gamma-carboxyglutamate)
                     residues; smart00069"
                     /db_xref="CDD:214503"
     Region          86..122
                     /region_name="EGF_CA"
                     /note="Calcium-binding EGF-like domain, present in a large
                     number of membrane-bound and extracellular (mostly animal)
                     proteins. Many of these proteins require calcium for their
                     biological function and calcium-binding sites have been
                     found to be located at the...; cd00054"
                     /db_xref="CDD:238011"
     Site            order(86,89,103)
                     /site_type="other"
                     /note="Ca2+ binding site [ion binding]"
                     /db_xref="CDD:238011"
     Region          127..163
                     /region_name="FXa_inhibition"
                     /note="Coagulation Factor Xa inhibitory site; pfam14670"
                     /db_xref="CDD:464251"
     Region          232..463
                     /region_name="Tryp_SPc"
                     /note="Trypsin-like serine protease; Many of these are
                     synthesized as inactive precursor zymogens that are
                     cleaved during limited proteolysis to generate their
                     active forms. Alignment contains also inactive enzymes
                     that have substitutions of the catalytic triad...;
                     cd00190"
                     /db_xref="CDD:238113"
     Site            232
                     /site_type="active"
                     /note="cleavage site [active]"
                     /db_xref="CDD:238113"
     Site            order(273,321,417)
                     /site_type="active"
                     /db_xref="CDD:238113"
     Site            order(411,436,438)
                     /site_type="other"
                     /note="substrate binding sites [chemical binding]"
                     /db_xref="CDD:238113"
     CDS             1..467
                     /gene="F9"
                     /coded_by="XM_009560952.2:60..1463"
                     /db_xref="GeneID:104059300"
ORIGIN      
        1 maniplilsi cllgvclgve rtvfiknkea nsvlqrqkra nsnrleevip gnlereciee
       61 kcsfeearev fentektmef wntyidgdqc dpnpckngav ckdavssyvc wcpagyegrn
      121 ceidftcaik nggckhfckh dppqkvvcsc apgyrlhedg kscepavpyp cgritapeak
      181 skltraintf ehwnitaedh dnaheevldn itesstiatt kitpviktgt rvvggsdsmr
      241 gevpwqvhlv nskgvgfcga siinekwvvt aahclqpgad vtavageynt deednteqrr
      301 kvvkilphpt ynatinkhhn dialleldep lkfnsyvtpi cigsreftna llkhgtgtvs
      361 gwgstlfrgr patilqvlkv pfvdrptclk ststsilqnm fcagfsaggs dtcggdsggp
      421 ytteiegtwf ltgitswgee cakpgkygiy trvskyvkwi kentrld
//
LOCUS       XP_053931374             281 aa            linear   VRT 09-MAR-2023
DEFINITION  fibroblast growth factor 13 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931374
VERSION     XP_053931374.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075399.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..281
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..281
                     /product="fibroblast growth factor 13 isoform X1"
                     /calculated_mol_wt=31342
     Region          101..248
                     /region_name="beta-trefoil_FGF13"
                     /note="FGF domain, beta-trefoil fold, found in fibroblast
                     growth factor 13 (FGF13) and similar proteins; cd23329"
                     /db_xref="CDD:467015"
     Site            order(101,103..105,140,142,144..146,148,180..181,183,
                     185..189,231..232,237)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467015"
     CDS             1..281
                     /gene="FGF13"
                     /coded_by="XM_054075399.1:31..876"
                     /db_xref="GeneID:104059291"
ORIGIN      
        1 mlccnlqnir splnnicsaa gpgsvlcllh lplrsdtepg ervmddappg tqeyimlrqd
       61 siqsaelkkk espfrakche ifccplkqvh lkentepeep qlkgivtkly srqgyhlqlq
      121 adgtidgtke edssytlfnl ipvglrvvai qgvqtklyla mnsegylyts ehftpeckfk
      181 esvfenyyvt yssmiyrqqq sgrgwylgln kegeimkgnh vkknkpaahf lpkplkvamy
      241 kepslhdlte fsrsgsgtpt ksrsvsgvln ggksvsqnes t
//
LOCUS       XP_009559239             238 aa            linear   VRT 09-MAR-2023
DEFINITION  fibroblast growth factor 13 isoform X2 [Cuculus canorus].
ACCESSION   XP_009559239
VERSION     XP_009559239.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560944.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..238
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..238
                     /product="fibroblast growth factor 13 isoform X2"
                     /calculated_mol_wt=26753
     Region          58..205
                     /region_name="beta-trefoil_FGF13"
                     /note="FGF domain, beta-trefoil fold, found in fibroblast
                     growth factor 13 (FGF13) and similar proteins; cd23329"
                     /db_xref="CDD:467015"
     Site            order(58,60..62,97,99,101..103,105,137..138,140,142..146,
                     188..189,194)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467015"
     CDS             1..238
                     /gene="FGF13"
                     /coded_by="XM_009560944.2:61..777"
                     /db_xref="GeneID:104059291"
ORIGIN      
        1 mddappgtqe yimlrqdsiq saelkkkesp frakcheifc cplkqvhlke ntepeepqlk
       61 givtklysrq gyhlqlqadg tidgtkeeds sytlfnlipv glrvvaiqgv qtklylamns
      121 egylytsehf tpeckfkesv fenyyvtyss miyrqqqsgr gwylglnkeg eimkgnhvkk
      181 nkpaahflpk plkvamykep slhdltefsr sgsgtptksr svsgvlnggk svsqnest
//
LOCUS       XP_053931375             255 aa            linear   VRT 09-MAR-2023
DEFINITION  fibroblast growth factor 13 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931375
VERSION     XP_053931375.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075400.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..255
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..255
                     /product="fibroblast growth factor 13 isoform X3"
                     /calculated_mol_wt=28610
     Region          75..222
                     /region_name="beta-trefoil_FGF13"
                     /note="FGF domain, beta-trefoil fold, found in fibroblast
                     growth factor 13 (FGF13) and similar proteins; cd23329"
                     /db_xref="CDD:467015"
     Site            order(75,77..79,114,116,118..120,122,154..155,157,
                     159..163,205..206,211)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467015"
     CDS             1..255
                     /gene="FGF13"
                     /coded_by="XM_054075400.1:243..1010"
                     /db_xref="GeneID:104059291"
ORIGIN      
        1 msgkvikpke ekdaskvmdd appgtqeyim lrqdsiqsae lkkkespfra kcheifccpl
       61 kqvhlkente peepqlkgiv tklysrqgyh lqlqadgtid gtkeedssyt lfnlipvglr
      121 vvaiqgvqtk lylamnsegy lytsehftpe ckfkesvfen yyvtyssmiy rqqqsgrgwy
      181 lglnkegeim kgnhvkknkp aahflpkplk vamykepslh dltefsrsgs gtptksrsvs
      241 gvlnggksvs qnest
//
LOCUS       XP_053931376             249 aa            linear   VRT 09-MAR-2023
DEFINITION  fibroblast growth factor 13 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931376
VERSION     XP_053931376.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075401.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..249
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..249
                     /product="fibroblast growth factor 13 isoform X4"
                     /calculated_mol_wt=28043
     Region          69..216
                     /region_name="beta-trefoil_FGF13"
                     /note="FGF domain, beta-trefoil fold, found in fibroblast
                     growth factor 13 (FGF13) and similar proteins; cd23329"
                     /db_xref="CDD:467015"
     Site            order(69,71..73,108,110,112..114,116,148..149,151,
                     153..157,199..200,205)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467015"
     CDS             1..249
                     /gene="FGF13"
                     /coded_by="XM_054075401.1:110..859"
                     /db_xref="GeneID:104059291"
ORIGIN      
        1 merrcesigq vmddappgtq eyimlrqdsi qsaelkkkes pfrakcheif ccplkqvhlk
       61 entepeepql kgivtklysr qgyhlqlqad gtidgtkeed ssytlfnlip vglrvvaiqg
      121 vqtklylamn segylytseh ftpeckfkes vfenyyvtys smiyrqqqsg rgwylglnke
      181 geimkgnhvk knkpaahflp kplkvamyke pslhdltefs rsgsgtptks rsvsgvlngg
      241 ksvsqnest
//
LOCUS       XP_009559238             245 aa            linear   VRT 09-MAR-2023
DEFINITION  fibroblast growth factor 13 isoform X5 [Cuculus canorus].
ACCESSION   XP_009559238
VERSION     XP_009559238.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560943.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..245
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..245
                     /product="fibroblast growth factor 13 isoform X5"
                     /calculated_mol_wt=27428
     Region          65..212
                     /region_name="beta-trefoil_FGF13"
                     /note="FGF domain, beta-trefoil fold, found in fibroblast
                     growth factor 13 (FGF13) and similar proteins; cd23329"
                     /db_xref="CDD:467015"
     Site            order(65,67..69,104,106,108..110,112,144..145,147,
                     149..153,195..196,201)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467015"
     CDS             1..245
                     /gene="FGF13"
                     /coded_by="XM_009560943.2:478..1215"
                     /db_xref="GeneID:104059291"
ORIGIN      
        1 maaaiassli rqkrqarere ksnackcvns pskskgscdk nklnvfsrvk lfgskkrrrr
       61 rpepqlkgiv tklysrqgyh lqlqadgtid gtkeedssyt lfnlipvglr vvaiqgvqtk
      121 lylamnsegy lytsehftpe ckfkesvfen yyvtyssmiy rqqqsgrgwy lglnkegeim
      181 kgnhvkknkp aahflpkplk vamykepslh dltefsrsgs gtptksrsvs gvlnggksvs
      241 qnest
//
LOCUS       XP_053931377             238 aa            linear   VRT 09-MAR-2023
DEFINITION  fibroblast growth factor 13 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931377
VERSION     XP_053931377.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075402.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..238
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..238
                     /product="fibroblast growth factor 13 isoform X2"
                     /calculated_mol_wt=26753
     Region          58..205
                     /region_name="beta-trefoil_FGF13"
                     /note="FGF domain, beta-trefoil fold, found in fibroblast
                     growth factor 13 (FGF13) and similar proteins; cd23329"
                     /db_xref="CDD:467015"
     Site            order(58,60..62,97,99,101..103,105,137..138,140,142..146,
                     188..189,194)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467015"
     CDS             1..238
                     /gene="FGF13"
                     /coded_by="XM_054075402.1:273..989"
                     /db_xref="GeneID:104059291"
ORIGIN      
        1 mddappgtqe yimlrqdsiq saelkkkesp frakcheifc cplkqvhlke ntepeepqlk
       61 givtklysrq gyhlqlqadg tidgtkeeds sytlfnlipv glrvvaiqgv qtklylamns
      121 egylytsehf tpeckfkesv fenyyvtyss miyrqqqsgr gwylglnkeg eimkgnhvkk
      181 nkpaahflpk plkvamykep slhdltefsr sgsgtptksr svsgvlnggk svsqnest
//
LOCUS       XP_053931378             238 aa            linear   VRT 09-MAR-2023
DEFINITION  fibroblast growth factor 13 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931378
VERSION     XP_053931378.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075403.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..238
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..238
                     /product="fibroblast growth factor 13 isoform X2"
                     /calculated_mol_wt=26753
     Region          58..205
                     /region_name="beta-trefoil_FGF13"
                     /note="FGF domain, beta-trefoil fold, found in fibroblast
                     growth factor 13 (FGF13) and similar proteins; cd23329"
                     /db_xref="CDD:467015"
     Site            order(58,60..62,97,99,101..103,105,137..138,140,142..146,
                     188..189,194)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467015"
     CDS             1..238
                     /gene="FGF13"
                     /coded_by="XM_054075403.1:153..869"
                     /db_xref="GeneID:104059291"
ORIGIN      
        1 mddappgtqe yimlrqdsiq saelkkkesp frakcheifc cplkqvhlke ntepeepqlk
       61 givtklysrq gyhlqlqadg tidgtkeeds sytlfnlipv glrvvaiqgv qtklylamns
      121 egylytsehf tpeckfkesv fenyyvtyss miyrqqqsgr gwylglnkeg eimkgnhvkk
      181 nkpaahflpk plkvamykep slhdltefsr sgsgtptksr svsgvlnggk svsqnest
//
LOCUS       XP_053931379             225 aa            linear   VRT 09-MAR-2023
DEFINITION  fibroblast growth factor 13 isoform X6 [Cuculus canorus].
ACCESSION   XP_053931379
VERSION     XP_053931379.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075404.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..225
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..225
                     /product="fibroblast growth factor 13 isoform X6"
                     /calculated_mol_wt=24871
     Region          45..192
                     /region_name="beta-trefoil_FGF13"
                     /note="FGF domain, beta-trefoil fold, found in fibroblast
                     growth factor 13 (FGF13) and similar proteins; cd23329"
                     /db_xref="CDD:467015"
     Site            order(45,47..49,84,86,88..90,92,124..125,127,129..133,
                     175..176,181)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467015"
     CDS             1..225
                     /gene="FGF13"
                     /coded_by="XM_054075404.1:45..722"
                     /db_xref="GeneID:104059291"
ORIGIN      
        1 mlccnlqnir splnnicsaa gpgsvlcllh lplrsdtepg erepqlkgiv tklysrqgyh
       61 lqlqadgtid gtkeedssyt lfnlipvglr vvaiqgvqtk lylamnsegy lytsehftpe
      121 ckfkesvfen yyvtyssmiy rqqqsgrgwy lglnkegeim kgnhvkknkp aahflpkplk
      181 vamykepslh dltefsrsgs gtptksrsvs gvlnggksvs qnest
//
LOCUS       XP_053931380             220 aa            linear   VRT 09-MAR-2023
DEFINITION  fibroblast growth factor 13 isoform X7 [Cuculus canorus].
ACCESSION   XP_053931380
VERSION     XP_053931380.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075405.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..220
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..220
                     /product="fibroblast growth factor 13 isoform X7"
                     /calculated_mol_wt=24570
     Region          40..187
                     /region_name="beta-trefoil_FGF13"
                     /note="FGF domain, beta-trefoil fold, found in fibroblast
                     growth factor 13 (FGF13) and similar proteins; cd23329"
                     /db_xref="CDD:467015"
     Site            order(40,42..44,79,81,83..85,87,119..120,122,124..128,
                     170..171,176)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467015"
     CDS             1..220
                     /gene="FGF13"
                     /coded_by="XM_054075405.1:18..680"
                     /db_xref="GeneID:104059291"
ORIGIN      
        1 mtawsfsvtv stsffhlqva gqsilsqphh llwgyikepq lkgivtklys rqgyhlqlqa
       61 dgtidgtkee dssytlfnli pvglrvvaiq gvqtklylam nsegylytse hftpeckfke
      121 svfenyyvty ssmiyrqqqs grgwylglnk egeimkgnhv kknkpaahfl pkplkvamyk
      181 epslhdltef srsgsgtptk srsvsgvlng gksvsqnest
//
LOCUS       XP_053931381             199 aa            linear   VRT 09-MAR-2023
DEFINITION  fibroblast growth factor 13 isoform X8 [Cuculus canorus].
ACCESSION   XP_053931381
VERSION     XP_053931381.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075406.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..199
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..199
                     /product="fibroblast growth factor 13 isoform X8"
                     /calculated_mol_wt=22139
     Region          19..166
                     /region_name="beta-trefoil_FGF13"
                     /note="FGF domain, beta-trefoil fold, found in fibroblast
                     growth factor 13 (FGF13) and similar proteins; cd23329"
                     /db_xref="CDD:467015"
     Site            order(19,21..23,58,60,62..64,66,98..99,101,103..107,
                     149..150,155)
                     /site_type="other"
                     /note="heterodimer interface [polypeptide binding]"
                     /db_xref="CDD:467015"
     CDS             1..199
                     /gene="FGF13"
                     /coded_by="XM_054075406.1:243..842"
                     /db_xref="GeneID:104059291"
ORIGIN      
        1 msgkvikpke ekdaskepql kgivtklysr qgyhlqlqad gtidgtkeed ssytlfnlip
       61 vglrvvaiqg vqtklylamn segylytseh ftpeckfkes vfenyyvtys smiyrqqqsg
      121 rgwylglnke geimkgnhvk knkpaahflp kplkvamyke pslhdltefs rsgsgtptks
      181 rsvsgvlngg ksvsqnest
//
LOCUS       XP_053931382             767 aa            linear   VRT 09-MAR-2023
DEFINITION  NF-kappa-B-repressing factor [Cuculus canorus].
ACCESSION   XP_053931382
VERSION     XP_053931382.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075407.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..767
                     /product="NF-kappa-B-repressing factor"
                     /calculated_mol_wt=85811
     Region          15..99
                     /region_name="XTBD"
                     /note="XRN-Two Binding Domain, XTBD; pfam11952"
                     /db_xref="CDD:463409"
     Region          425..486
                     /region_name="DSRM"
                     /note="Double-stranded RNA binding motif; smart00358"
                     /db_xref="CDD:214634"
     Site            order(430..431,433,469..471,474)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:380679"
     Region          526..588
                     /region_name="DSRM_SF"
                     /note="double-stranded RNA binding motif (DSRM)
                     superfamily; cl00054"
                     /db_xref="CDD:444671"
     Site            order(533..534,536,555,572..574,577)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:380679"
     Region          626..669
                     /region_name="G-patch"
                     /note="G-patch domain; cl02611"
                     /db_xref="CDD:445852"
     Region          680..739
                     /region_name="R3H_NRF"
                     /note="R3H domain of the NF-kappaB-repression factor
                     (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins
                     that can silence the IFNbeta promoter via binding to a
                     negative regulatory element (NRE). Beside R3H NRF also
                     contains a G-patch domain. The name of the...; cd02640"
                     /db_xref="CDD:100069"
     Site            order(710,714)
                     /site_type="other"
                     /note="RxxxH motif"
                     /db_xref="CDD:100069"
     CDS             1..767
                     /gene="NKRF"
                     /coded_by="XM_054075407.1:118..2421"
                     /db_xref="GeneID:104064030"
ORIGIN      
        1 mappepavvp epvleqwrqh neterqwglr rlfilrhlhd fpgaaidrll alsvlwtnhv
       61 flgcrygeqv mekvlkmaeg idigetrtye lvpsknlkry rspsnspere eiseppkkiv
      121 pkfrvrprfe pihfvtsaek ddkkedsldn qtqevnqean tnsvaqlaen ctssfasawe
      181 adpqlsssag lgfagqaaaa kaavnstdst psstvqvsvs psaaqstset fppsaitlkq
      241 sfieklsaav wknlanpdan tgtdkinyty lltrsiqack tnpeyiyvpl keiapadlpk
      301 skklltdgfa cevrcqnvyl atgyagskng srdraaeqav kllkksvevr vvqrkfkhiy
      361 hedlvvceag vsrldfppal kpheefvvan rdcvpmqpga esakgsvnss khwtsfvlte
      421 nasdaigiln nsasynkmsv eykyelmpnr swrcqvylqd hclaegfgtk ktskhaaaee
      481 alkilqkmqs niaaikvtqv qkvgcssrgs grkkdlkdlv iyenssnpvc tlndtaqfnk
      541 mtveyvferm tgmrwkckvm ledefiaeav gvkksvkhea aeeavkilkk tqptvvnnlk
      601 kgtiedvisr neirgrsaee afkqkitedn ignqilrkmg wtggglgkdg egirepisvk
      661 eqfkreglgl dvervnkiak rdieeiirny arseshvdlt fsreltmder kqihqiaqky
      721 glkskshgqg hnrylvvsrk rrkedlldql kqegqvghye limpqan
//
LOCUS       XP_053931383             152 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin-conjugating enzyme E2 A [Cuculus canorus].
ACCESSION   XP_053931383
VERSION     XP_053931383.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075408.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..152
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..152
                     /product="ubiquitin-conjugating enzyme E2 A"
                     /calculated_mol_wt=17184
     Region          3..145
                     /region_name="UBCc_UBE2A_2B"
                     /note="Ubiquitin-conjugating enzyme E2, catalytic (UBCc)
                     domain of ubiquitin-conjugating enzymes E2A, E2B and
                     related proteins; cd23790"
                     /db_xref="CDD:467410"
     CDS             1..152
                     /gene="UBE2A"
                     /coded_by="XM_054075408.1:211..669"
                     /db_xref="GeneID:104064053"
ORIGIN      
        1 mstparrrlm rdfkrlqedp pagvsgapse nnimvwnavi fgpegtpfed gtfkltieft
       61 eeypnkpptv rfvskmfhpn vyadgsicld ilqnrwspty dvssiltsiq slldepnpns
      121 pansqaaqly qenkreyekr vsaiveqswr dc
//
LOCUS       XP_053931384             365 aa            linear   VRT 09-MAR-2023
DEFINITION  PHD finger protein 6 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931384
VERSION     XP_053931384.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075409.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..365
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..365
                     /product="PHD finger protein 6 isoform X1"
                     /calculated_mol_wt=40877
     Region          17..131
                     /region_name="ePHD1_PHF6"
                     /note="Extended PHD finger 1 found in PHD finger protein 6
                     (PHF6); cd15710"
                     /db_xref="CDD:277180"
     Site            order(81,90..94,100,126)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277180"
     Region          212..329
                     /region_name="ePHD2_PHF6"
                     /note="Extended PHD finger 2 found in PHD finger protein 6
                     (PHF6); cd15711"
                     /db_xref="CDD:277181"
     Site            order(279,288..292,298,324)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277181"
     CDS             1..365
                     /gene="PHF6"
                     /coded_by="XM_054075409.1:336..1433"
                     /db_xref="GeneID:104060669"
ORIGIN      
        1 mtssvgqkkv ssrqrkcgfc rsnkdnecgq llmsenqkva ahhkcmlfss alvsshtdne
       61 slggfsiedi qkeikrgtkl mcslchcpga tigcdvktch ktyhyycalh dkaqirekps
      121 qgiymilcrk hkktthnsea dleesinehe ldpsppkgkr rgrkgkprkt nlkgqsedtr
      181 stsshgtdei esssyrdrsp hrsspsdtkp kcgfchagee eneargklhi fnakkaaahy
      241 kcmlfssgtv qltttsraef gdfdiktvlq eikrgkrmkc tlcsqpgati gceikacikt
      301 yhyhcgvedk akyienmsrg iyklycknhs gnderdeede eresksrgks gtdhndipqq
      361 qlngn
//
LOCUS       XP_053931385             365 aa            linear   VRT 09-MAR-2023
DEFINITION  PHD finger protein 6 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931385
VERSION     XP_053931385.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075410.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..365
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..365
                     /product="PHD finger protein 6 isoform X1"
                     /calculated_mol_wt=40877
     Region          17..131
                     /region_name="ePHD1_PHF6"
                     /note="Extended PHD finger 1 found in PHD finger protein 6
                     (PHF6); cd15710"
                     /db_xref="CDD:277180"
     Site            order(81,90..94,100,126)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277180"
     Region          212..329
                     /region_name="ePHD2_PHF6"
                     /note="Extended PHD finger 2 found in PHD finger protein 6
                     (PHF6); cd15711"
                     /db_xref="CDD:277181"
     Site            order(279,288..292,298,324)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277181"
     CDS             1..365
                     /gene="PHF6"
                     /coded_by="XM_054075410.1:339..1436"
                     /db_xref="GeneID:104060669"
ORIGIN      
        1 mtssvgqkkv ssrqrkcgfc rsnkdnecgq llmsenqkva ahhkcmlfss alvsshtdne
       61 slggfsiedi qkeikrgtkl mcslchcpga tigcdvktch ktyhyycalh dkaqirekps
      121 qgiymilcrk hkktthnsea dleesinehe ldpsppkgkr rgrkgkprkt nlkgqsedtr
      181 stsshgtdei esssyrdrsp hrsspsdtkp kcgfchagee eneargklhi fnakkaaahy
      241 kcmlfssgtv qltttsraef gdfdiktvlq eikrgkrmkc tlcsqpgati gceikacikt
      301 yhyhcgvedk akyienmsrg iyklycknhs gnderdeede eresksrgks gtdhndipqq
      361 qlngn
//
LOCUS       XP_053931386             364 aa            linear   VRT 09-MAR-2023
DEFINITION  PHD finger protein 6 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931386
VERSION     XP_053931386.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075411.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..364
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..364
                     /product="PHD finger protein 6 isoform X2"
                     /calculated_mol_wt=40806
     Region          17..131
                     /region_name="ePHD1_PHF6"
                     /note="Extended PHD finger 1 found in PHD finger protein 6
                     (PHF6); cd15710"
                     /db_xref="CDD:277180"
     Site            order(81,90..94,100,126)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277180"
     Region          211..328
                     /region_name="ePHD2_PHF6"
                     /note="Extended PHD finger 2 found in PHD finger protein 6
                     (PHF6); cd15711"
                     /db_xref="CDD:277181"
     Site            order(278,287..291,297,323)
                     /site_type="other"
                     /note="putative histone H3 binding site [polypeptide
                     binding]"
                     /db_xref="CDD:277181"
     CDS             1..364
                     /gene="PHF6"
                     /coded_by="XM_054075411.1:334..1428"
                     /db_xref="GeneID:104060669"
ORIGIN      
        1 mtssvgqkkv ssrqrkcgfc rsnkdnecgq llmsenqkva ahhkcmlfss alvsshtdne
       61 slggfsiedi qkeikrgtkl mcslchcpga tigcdvktch ktyhyycalh dkaqirekps
      121 qgiymilcrk hkktthnsed leesinehel dpsppkgkrr grkgkprktn lkgqsedtrs
      181 tsshgtdeie sssyrdrsph rsspsdtkpk cgfchageee neargklhif nakkaaahyk
      241 cmlfssgtvq ltttsraefg dfdiktvlqe ikrgkrmkct lcsqpgatig ceikacikty
      301 hyhcgvedka kyienmsrgi yklycknhsg nderdeedee resksrgksg tdhndipqqq
      361 lngn
//
LOCUS       XP_053931387             899 aa            linear   VRT 09-MAR-2023
DEFINITION  integrator complex subunit 6-like isoform X1 [Cuculus canorus].
ACCESSION   XP_053931387
VERSION     XP_053931387.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075412.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..899
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..899
                     /product="integrator complex subunit 6-like isoform X1"
                     /calculated_mol_wt=100478
     Region          4..103
                     /region_name="VWA_2"
                     /note="von Willebrand factor type A domain; pfam13519"
                     /db_xref="CDD:463909"
     Region          819..878
                     /region_name="INT_SG_DDX_CT_C"
                     /note="INTS6/SAGE1/DDX26B/CT45 C-terminus; pfam15300"
                     /db_xref="CDD:464626"
     CDS             1..899
                     /gene="LOC104060685"
                     /coded_by="XM_054075412.1:138..2837"
                     /db_xref="GeneID:104060685"
ORIGIN      
        1 mpillflidt sasmnqrayl gtsyldiakg aveifmklra rdpasrgdry mlvtfdeppy
       61 cikagwkenh atfmnelknl qasglttlgq alrssfdlln lnrlvsgidn ygqgrnpffl
      121 epsilititd gnkltntagv qeelhlplns plpgseltke pfrwdqrlfa lvlrlpgaas
      181 aepeqlgsvp tdesaitqmc evtggrsycv rtqrmlnqcl eslvqkvqsg vvinfeksgp
      241 dpapvgedgl vdssrpinsf asqpwhschk liyvrpnpkt gvpvghwpip esfwpdqnsp
      301 tlpprtahpv vrfscvdcep mvidklpfdk yelepspltq yilerkspht cwqvfvsssg
      361 kyselgypfg ylkasttltc vnlfvmpyny pvllpllddl fkvhklkpnl kwrqafdnyl
      421 ktmppyyllp lkkalrmmga pnlisdnldc glsysvisyl kklsqqtkie seriigsvgk
      481 kvpqeigikv knhssglslv hsrdfkqllq gitgesplrl aemnvkefag fhigllnkdl
      541 kpqafrnayd iprhslldql trmrtnllkt hrlisgqded clhsvpvaqm gnyqeylkmm
      601 psplreidpd qpkrlhtfgn pfkqdkkgmm ideadefvag pqnkikrpge lntpaslkrr
      661 rsmspllrrp qsppvvtnhv ggkgppsasg spsylnlkgi pankdannsi vqdgngekka
      721 encqslekqi dglpvpmaps vpaamgedem lpndldslpv efnclsedgl dhkpgsnalv
      781 rgplnysvtg ddqkratest sesvpnsfki tptmlegnna dikikvmkev rkpgrnyeki
      841 fslleevqgp veiqkyfvef aikeaarfkk rvliqhleri leelefnslp nrvnhvnsr
//
LOCUS       XP_053931388             862 aa            linear   VRT 09-MAR-2023
DEFINITION  integrator complex subunit 6-like isoform X2 [Cuculus canorus].
ACCESSION   XP_053931388
VERSION     XP_053931388.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075413.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..862
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..862
                     /product="integrator complex subunit 6-like isoform X2"
                     /calculated_mol_wt=96399
     Region          4..103
                     /region_name="VWA_2"
                     /note="von Willebrand factor type A domain; pfam13519"
                     /db_xref="CDD:463909"
     Region          782..841
                     /region_name="INT_SG_DDX_CT_C"
                     /note="INTS6/SAGE1/DDX26B/CT45 C-terminus; pfam15300"
                     /db_xref="CDD:464626"
     CDS             1..862
                     /gene="LOC104060685"
                     /coded_by="XM_054075413.1:138..2726"
                     /db_xref="GeneID:104060685"
ORIGIN      
        1 mpillflidt sasmnqrayl gtsyldiakg aveifmklra rdpasrgdry mlvtfdeppy
       61 cikagwkenh atfmnelknl qasglttlgq alrssfdlln lnrlvsgidn ygqgrnpffl
      121 epsilititd gnkltntagv qeelhlplns plpgseltke pfrwdqrlfa lvlrlpgaas
      181 aepeqlgsvp tdesaitqmc evtggrsycv rtqrmlnqcl eslvqkvqsg vvinfeksgp
      241 dpapvgedgl vdssrpinsf asqpwhschk liyvrpnpkt gvpvghwpip esfwpdqnsp
      301 tlpprtahpv vrfscvdcep mvidklpfdk yelepspltq yilerkspht cwqvfvsssg
      361 kyselgypfg ylkasttltc vnlfvmpyny pvllpllddl fkvhklkpnl kwrqafdnyl
      421 ktmppyyllt kieseriigs vgkkvpqeig ikvknhssgl slvhsrdfkq llqgitgesp
      481 lrlaemnvke fagfhiglln kdlkpqafrn aydiprhsll dqltrmrtnl lkthrlisgq
      541 dedclhsvpv aqmgnyqeyl kmmpsplrei dpdqpkrlht fgnpfkqdkk gmmideadef
      601 vagpqnkikr pgelntpasl krrrsmspll rrpqsppvvt nhvggkgpps asgspsylnl
      661 kgipankdan nsivqdgnge kkaencqsle kqidglpvpm apsvpaamge demlpndlds
      721 lpvefnclse dgldhkpgsn alvrgplnys vtgddqkrat estsesvpns fkitptmleg
      781 nnadikikvm kevrkpgrny ekifslleev qgpveiqkyf vefaikeaar fkkrvliqhl
      841 erileelefn slpnrvnhvn sr
//
LOCUS       XP_053931389             409 aa            linear   VRT 09-MAR-2023
DEFINITION  integrator complex subunit 6-like isoform X3 [Cuculus canorus].
ACCESSION   XP_053931389
VERSION     XP_053931389.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075414.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..409
                     /product="integrator complex subunit 6-like isoform X3"
                     /calculated_mol_wt=45493
     Region          4..103
                     /region_name="VWA_2"
                     /note="von Willebrand factor type A domain; pfam13519"
                     /db_xref="CDD:463909"
     CDS             1..409
                     /gene="LOC104060685"
                     /coded_by="XM_054075414.1:147..1376"
                     /db_xref="GeneID:104060685"
ORIGIN      
        1 mpillflidt sasmnqrayl gtsyldiakg aveifmklra rdpasrgdry mlvtfdeppy
       61 cikagwkenh atfmnelknl qasglttlgq alrssfdlln lnrlvsgidn ygqgrnpffl
      121 epsilititd gnkltntagv qeelhlplns plpgseltke pfrwdqrlfa lvlrlpgaas
      181 aepeqlgsvp tdesaitqmc evtggrsycv rtqrmlnqcl eslvqkvqsg vvinfeksgp
      241 dpapvgedgl vdssrpinsf asqpwhschk liyvrpnpkt gvpvghwpip esfwpdqnsp
      301 tlpprtahpv vrfscvdcep mvidklpfdk yelepspltq yilerkspht cwqvfvsssg
      361 kyselgypfg ylkasttltc vnlfvmpyny pvllpllaee esyllpvhv
//
LOCUS       XP_053931390             408 aa            linear   VRT 09-MAR-2023
DEFINITION  integrator complex subunit 6-like isoform X4 [Cuculus canorus].
ACCESSION   XP_053931390
VERSION     XP_053931390.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075415.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..408
                     /product="integrator complex subunit 6-like isoform X4"
                     /calculated_mol_wt=45422
     Region          4..103
                     /region_name="VWA_2"
                     /note="von Willebrand factor type A domain; pfam13519"
                     /db_xref="CDD:463909"
     CDS             1..408
                     /gene="LOC104060685"
                     /coded_by="XM_054075415.1:147..1373"
                     /db_xref="GeneID:104060685"
ORIGIN      
        1 mpillflidt sasmnqrayl gtsyldiakg aveifmklra rdpasrgdry mlvtfdeppy
       61 cikagwkenh atfmnelknl qasglttlgq alrssfdlln lnrlvsgidn ygqgrnpffl
      121 epsilititd gnkltntagv qeelhlplns plpgseltke pfrwdqrlfa lvlrlpgaas
      181 aepeqlgsvp tdesaitqmc evtggrsycv rtqrmlnqcl eslvqkvqsg vvinfeksgp
      241 dpapvgedgl vdssrpinsf asqpwhschk liyvrpnpkt gvpvghwpip esfwpdqnsp
      301 tlpprtahpv vrfscvdcep mvidklpfdk yelepspltq yilerkspht cwqvfvsssg
      361 kyselgypfg ylkasttltc vnlfvmpyny pvllplleee syllpvhv
//
LOCUS       XP_053931391             183 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related protein Rap-2c [Cuculus canorus].
ACCESSION   XP_053931391
VERSION     XP_053931391.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075416.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..183
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..183
                     /product="ras-related protein Rap-2c"
                     /calculated_mol_wt=20570
     Region          3..165
                     /region_name="Rap2"
                     /note="Rap2 family GTPase consists of Rap2a, Rap2b, and
                     Rap2c; cd04176"
                     /db_xref="CDD:133376"
     Site            10..17
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:133376"
     Site            order(11..12,59..60)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133376"
     Site            order(13..18,28..31,116..117,119,146..147)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:133376"
     Site            order(17..18,32,34,40..41,54..55,57,59..60,148)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:133376"
     Site            order(25,31,33,36..41)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:133376"
     Site            33..40
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:133376"
     Site            35
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:133376"
     Site            57..60
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:133376"
     Site            order(59..65,68..73,76..77)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:133376"
     Site            116..119
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:133376"
     Site            146..148
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:133376"
     CDS             1..183
                     /gene="RAP2C"
                     /coded_by="XM_054075416.1:229..780"
                     /db_xref="GeneID:104060665"
ORIGIN      
        1 mreykvvvlg sggvgksalt vqfvtgtfie kydptiedfy rkeievdssp svleildtag
       61 teqfasmrdl yikngqgfil vyslvnqqsf qdikpmrdqi vrvkryekvp lilvgnkvdl
      121 eserevlsae gralaqewgc pfmetsaksk tmvdelfaei vrqmnyaslp ekqdqccttc
      181 tvq
//
LOCUS       XP_053931392             614 aa            linear   VRT 09-MAR-2023
DEFINITION  methionine--tRNA ligase, mitochondrial [Cuculus canorus].
ACCESSION   XP_053931392
VERSION     XP_053931392.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075417.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..614
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..614
                     /product="methionine--tRNA ligase, mitochondrial"
                     /calculated_mol_wt=68845
     Region          63..603
                     /region_name="MetG"
                     /note="Methionyl-tRNA synthetase [Translation, ribosomal
                     structure and biogenesis]; COG0143"
                     /db_xref="CDD:439913"
     CDS             1..614
                     /gene="MARS2"
                     /coded_by="XM_054075417.1:326..2170"
                     /db_xref="GeneID:104060508"
ORIGIN      
        1 maaspplpgr rlcravsmvt ppplqaatlg ralygaatam lrpprlspgp prrfaataag
       61 rgrrlllstp ifyangpphi ghlysallad alhrhrglel ggpgrlctgt dehglkiqqa
      121 atavgtsppe lcqrisglfr qvftqaaisf tdfirtsepr hkqavrhfwg alqnggalyk
      181 gcyegwyctp eecflpesql aerrdaqglp ckvslesghq vhwtkeenym frlsafrdpl
      241 rnwlrdnpca ispepfyqrt lrwleedlpd lsvsrersrl qwgipvpsds tqtiyvwvda
      301 lvnylsvlgy pethsewwpa ahhvvgkdil kfhaiywpal lmaaglappe rilvhshwtv
      361 hgqkmskslg nvidplacme qftvdgfryf llrqgvpdrd cdyydekvvk llnseladal
      421 ggllnrstal sinpsnsypr fsescfpkvl dyretkgtgr asaedyefla svaslpvqva
      481 tyfesfqvyk alecialcvr qtngffqrhk pwkldrkdpa eqlwldtiih vtleclrvyg
      541 tllqpvipht adkllsrlav epeerglsgl tflprydgkp cpfegrqlgp dtgvlfrkle
      601 rsqqqqaktk sscp
//
LOCUS       XP_053931393             607 aa            linear   VRT 09-MAR-2023
DEFINITION  apoptosis-inducing factor 1, mitochondrial isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053931393
VERSION     XP_053931393.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075418.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..607
                     /product="apoptosis-inducing factor 1, mitochondrial
                     isoform X1"
                     /calculated_mol_wt=65953
     Region          1..>163
                     /region_name="AIF-MLS"
                     /note="Mitochondria localization Sequence; pfam14962"
                     /db_xref="CDD:464407"
     Region          142..591
                     /region_name="NirB"
                     /note="NAD(P)H-nitrite reductase, large subunit [Energy
                     production and conversion]; COG1251"
                     /db_xref="CDD:440863"
     Region          459..588
                     /region_name="AIF_C"
                     /note="Apoptosis-inducing factor,
                     mitochondrion-associated, C-term; pfam14721"
                     /db_xref="CDD:464279"
     CDS             1..607
                     /gene="AIFM1"
                     /coded_by="XM_054075418.1:86..1909"
                     /db_xref="GeneID:104060509"
ORIGIN      
        1 mflcrvggla rslrplspsp ggraaagnlw qrwnaplelq qsrkvasagt pggkgdssvf
       61 vlivglstlg agvyvyktlk enkerftsrv atitrsqeke sppsdtdaas qgtaapgarp
      121 evpshvpfll igggtaafaa arsirardpg arvlivsedp alpymrppls kelwfsddpn
      181 vtetlrfkqw ngkersiyfq ppsfyvpvrd lpfvenggva vlcgkkvvhm dvrgnlvkls
      241 dgtqisydkc liatggtprn lpvleragkd vqqrltlfrk iedfksleki srevksitii
      301 gggflgsela calgrrartr gleviqlfpe ngnmgkvlpe ylsnwttekv rregvnvmpn
      361 avvksvsvsg krlmiklkdg rkvetdhiva avglepnvel aksaglevds dfggfrvnae
      421 lqarsniwva gdaacfydik lgrrrvehhd havvsgrlag enmtgaakpy whqsmfwsdl
      481 gpnvgyeaig lvdsslptvg vfakatakdt pksateqsgt girsesetea easevhvsqs
      541 vsptpqvpkq gedygkgvif ylrdkvvvgi vlwnifnrmp iarkiikdge ehddlnevak
      601 lfnihed
//
LOCUS       XP_053931394             602 aa            linear   VRT 09-MAR-2023
DEFINITION  apoptosis-inducing factor 1, mitochondrial isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053931394
VERSION     XP_053931394.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075419.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..602
                     /product="apoptosis-inducing factor 1, mitochondrial
                     isoform X2"
                     /calculated_mol_wt=65296
     Region          1..>158
                     /region_name="AIF-MLS"
                     /note="Mitochondria localization Sequence; pfam14962"
                     /db_xref="CDD:464407"
     Region          137..586
                     /region_name="NirB"
                     /note="NAD(P)H-nitrite reductase, large subunit [Energy
                     production and conversion]; COG1251"
                     /db_xref="CDD:440863"
     Region          454..583
                     /region_name="AIF_C"
                     /note="Apoptosis-inducing factor,
                     mitochondrion-associated, C-term; pfam14721"
                     /db_xref="CDD:464279"
     CDS             1..602
                     /gene="AIFM1"
                     /coded_by="XM_054075419.1:85..1893"
                     /db_xref="GeneID:104060509"
ORIGIN      
        1 mflcrvggla rslrplspsp ggraaavlpc lhlrcpsrsl tssgvpgkag snlllylivg
       61 gtvtgtgayv yktlkenker ftsrvatitr sqekesppsd tdaasqgtaa pgarpevpsh
      121 vpflligggt aafaaarsir ardpgarvli vsedpalpym rpplskelwf sddpnvtetl
      181 rfkqwngker siyfqppsfy vpvrdlpfve nggvavlcgk kvvhmdvrgn lvklsdgtqi
      241 sydkcliatg gtprnlpvle ragkdvqqrl tlfrkiedfk slekisrevk sitiigggfl
      301 gselacalgr rartrglevi qlfpengnmg kvlpeylsnw ttekvrregv nvmpnavvks
      361 vsvsgkrlmi klkdgrkvet dhivaavgle pnvelaksag levdsdfggf rvnaelqars
      421 niwvagdaac fydiklgrrr vehhdhavvs grlagenmtg aakpywhqsm fwsdlgpnvg
      481 yeaiglvdss lptvgvfaka takdtpksat eqsgtgirse seteaeasev hvsqsvsptp
      541 qvpkqgedyg kgvifylrdk vvvgivlwni fnrmpiarki ikdgeehddl nevaklfnih
      601 ed
//
LOCUS       XP_053931395             711 aa            linear   VRT 09-MAR-2023
DEFINITION  long-chain-fatty-acid--CoA ligase 4 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931395
VERSION     XP_053931395.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075420.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..711
                     /product="long-chain-fatty-acid--CoA ligase 4 isoform X1"
                     /calculated_mol_wt=79135
     Region          121..696
                     /region_name="LC_FACS_euk1"
                     /note="Eukaryotic long-chain fatty acid CoA synthetase
                     (LC-FACS), including fungal proteins; cd17639"
                     /db_xref="CDD:341294"
     Site            order(275,278..283,285..286)
                     /site_type="other"
                     /note="acyl-activating enzyme (AAE) consensus motif"
                     /db_xref="CDD:341294"
     Site            order(278,403..404,464..469,555,567,570,582,688)
                     /site_type="other"
                     /note="putative AMP binding site [chemical binding]"
                     /db_xref="CDD:341294"
     Site            order(278,319..320,374,376..377,380,403..404,464..469,555,
                     567,570,579..582,665)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:341294"
     Site            order(319,376..377,380,403,579..581,663,665)
                     /site_type="other"
                     /note="putative CoA binding site [chemical binding]"
                     /db_xref="CDD:341294"
     CDS             1..711
                     /gene="ACSL4"
                     /coded_by="XM_054075420.1:407..2542"
                     /db_xref="GeneID:104058348"
ORIGIN      
        1 mrlrlevcav lllpvyllis vysmlvfipw yfltnakkkk amakrlkakp isdkpgspyr
       61 svthldslan inipgadtld klfdhalakf gkkdclgtre ilseenemqp ngkvfkklil
      121 gtyrwlsyee vnekvnrlgs gltalgltpk stvvifcetr aewmiaaltc fkynfplvtl
      181 yatlgeeavt yglnecgaay lvtsielles klktalpqvs clkhiiyvdk ktinkseype
      241 nveihsmeav eelgakpens svlpsrpvpt dlalvmytsg stgrpkgvmm mhknliagmt
      301 gqceripglg pkdtyigylp lahvleltae iscitygcri gysspltlsd qsskikkgsk
      361 gdctvlkptl maavpeimdr iyknvmskvq emnyiqrtlf kigydykleq ikrgydaplc
      421 nillfkkvka llggnvrmml sggaplspqt qrfmnicfcc pvgqgyglte tcgagtitev
      481 adystgrvga plicceiklr dwqeggytnr dkpnprgeii iggpnvsmgy fkneektted
      541 fsidengqrw fctgdigefh pdgclqiidr kkdlvklqag eyvslgkvea alkncplidn
      601 icayaksdqs yvisfvvpnq kklmalaeqk gisgswvdic nnpvmeaeil reikevankm
      661 klerfeipik vrlspepwtp etglvtdafk lkrkelknhy lndiermygg k
//
LOCUS       XP_053931396             670 aa            linear   VRT 09-MAR-2023
DEFINITION  long-chain-fatty-acid--CoA ligase 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931396
VERSION     XP_053931396.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075421.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..670
                     /product="long-chain-fatty-acid--CoA ligase 4 isoform X2"
                     /calculated_mol_wt=74308
     Region          <7..>128
                     /region_name="PRK07868"
                     /note="acyl-CoA synthetase; Validated"
                     /db_xref="CDD:236121"
     Region          80..655
                     /region_name="LC_FACS_euk1"
                     /note="Eukaryotic long-chain fatty acid CoA synthetase
                     (LC-FACS), including fungal proteins; cd17639"
                     /db_xref="CDD:341294"
     Site            order(234,237..242,244..245)
                     /site_type="other"
                     /note="acyl-activating enzyme (AAE) consensus motif"
                     /db_xref="CDD:341294"
     Site            order(237,362..363,423..428,514,526,529,541,647)
                     /site_type="other"
                     /note="putative AMP binding site [chemical binding]"
                     /db_xref="CDD:341294"
     Site            order(237,278..279,333,335..336,339,362..363,423..428,514,
                     526,529,538..541,624)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:341294"
     Site            order(278,335..336,339,362,538..540,622,624)
                     /site_type="other"
                     /note="putative CoA binding site [chemical binding]"
                     /db_xref="CDD:341294"
     CDS             1..670
                     /gene="ACSL4"
                     /coded_by="XM_054075421.1:252..2264"
                     /db_xref="GeneID:104058348"
ORIGIN      
        1 makrlkakpi sdkpgspyrs vthldslani nipgadtldk lfdhalakfg kkdclgtrei
       61 lseenemqpn gkvfkklilg tyrwlsyeev nekvnrlgsg ltalgltpks tvvifcetra
      121 ewmiaaltcf kynfplvtly atlgeeavty glnecgaayl vtsiellesk lktalpqvsc
      181 lkhiiyvdkk tinkseypen veihsmeave elgakpenss vlpsrpvptd lalvmytsgs
      241 tgrpkgvmmm hknliagmtg qceripglgp kdtyigylpl ahvleltaei scitygcrig
      301 ysspltlsdq sskikkgskg dctvlkptlm aavpeimdri yknvmskvqe mnyiqrtlfk
      361 igydykleqi krgydaplcn illfkkvkal lggnvrmmls ggaplspqtq rfmnicfccp
      421 vgqgygltet cgagtiteva dystgrvgap licceiklrd wqeggytnrd kpnprgeiii
      481 ggpnvsmgyf kneekttedf sidengqrwf ctgdigefhp dgclqiidrk kdlvklqage
      541 yvslgkveaa lkncplidni cayaksdqsy visfvvpnqk klmalaeqkg isgswvdicn
      601 npvmeaeilr eikevankmk lerfeipikv rlspepwtpe tglvtdafkl krkelknhyl
      661 ndiermyggk
//
LOCUS       XP_053931397             670 aa            linear   VRT 09-MAR-2023
DEFINITION  long-chain-fatty-acid--CoA ligase 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931397
VERSION     XP_053931397.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075422.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..670
                     /product="long-chain-fatty-acid--CoA ligase 4 isoform X2"
                     /calculated_mol_wt=74308
     Region          <7..>128
                     /region_name="PRK07868"
                     /note="acyl-CoA synthetase; Validated"
                     /db_xref="CDD:236121"
     Region          80..655
                     /region_name="LC_FACS_euk1"
                     /note="Eukaryotic long-chain fatty acid CoA synthetase
                     (LC-FACS), including fungal proteins; cd17639"
                     /db_xref="CDD:341294"
     Site            order(234,237..242,244..245)
                     /site_type="other"
                     /note="acyl-activating enzyme (AAE) consensus motif"
                     /db_xref="CDD:341294"
     Site            order(237,362..363,423..428,514,526,529,541,647)
                     /site_type="other"
                     /note="putative AMP binding site [chemical binding]"
                     /db_xref="CDD:341294"
     Site            order(237,278..279,333,335..336,339,362..363,423..428,514,
                     526,529,538..541,624)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:341294"
     Site            order(278,335..336,339,362,538..540,622,624)
                     /site_type="other"
                     /note="putative CoA binding site [chemical binding]"
                     /db_xref="CDD:341294"
     CDS             1..670
                     /gene="ACSL4"
                     /coded_by="XM_054075422.1:250..2262"
                     /db_xref="GeneID:104058348"
ORIGIN      
        1 makrlkakpi sdkpgspyrs vthldslani nipgadtldk lfdhalakfg kkdclgtrei
       61 lseenemqpn gkvfkklilg tyrwlsyeev nekvnrlgsg ltalgltpks tvvifcetra
      121 ewmiaaltcf kynfplvtly atlgeeavty glnecgaayl vtsiellesk lktalpqvsc
      181 lkhiiyvdkk tinkseypen veihsmeave elgakpenss vlpsrpvptd lalvmytsgs
      241 tgrpkgvmmm hknliagmtg qceripglgp kdtyigylpl ahvleltaei scitygcrig
      301 ysspltlsdq sskikkgskg dctvlkptlm aavpeimdri yknvmskvqe mnyiqrtlfk
      361 igydykleqi krgydaplcn illfkkvkal lggnvrmmls ggaplspqtq rfmnicfccp
      421 vgqgygltet cgagtiteva dystgrvgap licceiklrd wqeggytnrd kpnprgeiii
      481 ggpnvsmgyf kneekttedf sidengqrwf ctgdigefhp dgclqiidrk kdlvklqage
      541 yvslgkveaa lkncplidni cayaksdqsy visfvvpnqk klmalaeqkg isgswvdicn
      601 npvmeaeilr eikevankmk lerfeipikv rlspepwtpe tglvtdafkl krkelknhyl
      661 ndiermyggk
//
LOCUS       XP_009558143             670 aa            linear   VRT 09-MAR-2023
DEFINITION  long-chain-fatty-acid--CoA ligase 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_009558143
VERSION     XP_009558143.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009559848.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009558143.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..670
                     /product="long-chain-fatty-acid--CoA ligase 4 isoform X2"
                     /calculated_mol_wt=74308
     Region          <7..>128
                     /region_name="PRK07868"
                     /note="acyl-CoA synthetase; Validated"
                     /db_xref="CDD:236121"
     Region          80..655
                     /region_name="LC_FACS_euk1"
                     /note="Eukaryotic long-chain fatty acid CoA synthetase
                     (LC-FACS), including fungal proteins; cd17639"
                     /db_xref="CDD:341294"
     Site            order(234,237..242,244..245)
                     /site_type="other"
                     /note="acyl-activating enzyme (AAE) consensus motif"
                     /db_xref="CDD:341294"
     Site            order(237,362..363,423..428,514,526,529,541,647)
                     /site_type="other"
                     /note="putative AMP binding site [chemical binding]"
                     /db_xref="CDD:341294"
     Site            order(237,278..279,333,335..336,339,362..363,423..428,514,
                     526,529,538..541,624)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:341294"
     Site            order(278,335..336,339,362,538..540,622,624)
                     /site_type="other"
                     /note="putative CoA binding site [chemical binding]"
                     /db_xref="CDD:341294"
     CDS             1..670
                     /gene="ACSL4"
                     /coded_by="XM_009559848.2:168..2180"
                     /db_xref="GeneID:104058348"
ORIGIN      
        1 makrlkakpi sdkpgspyrs vthldslani nipgadtldk lfdhalakfg kkdclgtrei
       61 lseenemqpn gkvfkklilg tyrwlsyeev nekvnrlgsg ltalgltpks tvvifcetra
      121 ewmiaaltcf kynfplvtly atlgeeavty glnecgaayl vtsiellesk lktalpqvsc
      181 lkhiiyvdkk tinkseypen veihsmeave elgakpenss vlpsrpvptd lalvmytsgs
      241 tgrpkgvmmm hknliagmtg qceripglgp kdtyigylpl ahvleltaei scitygcrig
      301 ysspltlsdq sskikkgskg dctvlkptlm aavpeimdri yknvmskvqe mnyiqrtlfk
      361 igydykleqi krgydaplcn illfkkvkal lggnvrmmls ggaplspqtq rfmnicfccp
      421 vgqgygltet cgagtiteva dystgrvgap licceiklrd wqeggytnrd kpnprgeiii
      481 ggpnvsmgyf kneekttedf sidengqrwf ctgdigefhp dgclqiidrk kdlvklqage
      541 yvslgkveaa lkncplidni cayaksdqsy visfvvpnqk klmalaeqkg isgswvdicn
      601 npvmeaeilr eikevankmk lerfeipikv rlspepwtpe tglvtdafkl krkelknhyl
      661 ndiermyggk
//
LOCUS       XP_053931398             670 aa            linear   VRT 09-MAR-2023
DEFINITION  long-chain-fatty-acid--CoA ligase 4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931398
VERSION     XP_053931398.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075423.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..670
                     /product="long-chain-fatty-acid--CoA ligase 4 isoform X2"
                     /calculated_mol_wt=74308
     Region          <7..>128
                     /region_name="PRK07868"
                     /note="acyl-CoA synthetase; Validated"
                     /db_xref="CDD:236121"
     Region          80..655
                     /region_name="LC_FACS_euk1"
                     /note="Eukaryotic long-chain fatty acid CoA synthetase
                     (LC-FACS), including fungal proteins; cd17639"
                     /db_xref="CDD:341294"
     Site            order(234,237..242,244..245)
                     /site_type="other"
                     /note="acyl-activating enzyme (AAE) consensus motif"
                     /db_xref="CDD:341294"
     Site            order(237,362..363,423..428,514,526,529,541,647)
                     /site_type="other"
                     /note="putative AMP binding site [chemical binding]"
                     /db_xref="CDD:341294"
     Site            order(237,278..279,333,335..336,339,362..363,423..428,514,
                     526,529,538..541,624)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:341294"
     Site            order(278,335..336,339,362,538..540,622,624)
                     /site_type="other"
                     /note="putative CoA binding site [chemical binding]"
                     /db_xref="CDD:341294"
     CDS             1..670
                     /gene="ACSL4"
                     /coded_by="XM_054075423.1:76..2088"
                     /db_xref="GeneID:104058348"
ORIGIN      
        1 makrlkakpi sdkpgspyrs vthldslani nipgadtldk lfdhalakfg kkdclgtrei
       61 lseenemqpn gkvfkklilg tyrwlsyeev nekvnrlgsg ltalgltpks tvvifcetra
      121 ewmiaaltcf kynfplvtly atlgeeavty glnecgaayl vtsiellesk lktalpqvsc
      181 lkhiiyvdkk tinkseypen veihsmeave elgakpenss vlpsrpvptd lalvmytsgs
      241 tgrpkgvmmm hknliagmtg qceripglgp kdtyigylpl ahvleltaei scitygcrig
      301 ysspltlsdq sskikkgskg dctvlkptlm aavpeimdri yknvmskvqe mnyiqrtlfk
      361 igydykleqi krgydaplcn illfkkvkal lggnvrmmls ggaplspqtq rfmnicfccp
      421 vgqgygltet cgagtiteva dystgrvgap licceiklrd wqeggytnrd kpnprgeiii
      481 ggpnvsmgyf kneekttedf sidengqrwf ctgdigefhp dgclqiidrk kdlvklqage
      541 yvslgkveaa lkncplidni cayaksdqsy visfvvpnqk klmalaeqkg isgswvdicn
      601 npvmeaeilr eikevankmk lerfeipikv rlspepwtpe tglvtdafkl krkelknhyl
      661 ndiermyggk
//
LOCUS       XP_053931399             683 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphatidylinositol-binding clathrin assembly protein isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931399
VERSION     XP_053931399.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075424.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..683
                     /product="phosphatidylinositol-binding clathrin assembly
                     protein isoform X1"
                     /calculated_mol_wt=74386
     Region          22..283
                     /region_name="ANTH"
                     /note="ANTH domain; pfam07651"
                     /db_xref="CDD:400137"
     Site            order(29,39,41..42)
                     /site_type="other"
                     /note="PtdIns(4,5)P2-binding site [chemical binding]"
                     /db_xref="CDD:340782"
     CDS             1..683
                     /gene="LOC104060500"
                     /coded_by="XM_054075424.1:226..2277"
                     /db_xref="GeneID:104060500"
ORIGIN      
        1 mmsgqsitdr iaaaqhsvtg savakavcka tthevmgpkk khldyliqct nemnvnipql
       61 admlfertan sswvvvfkal itthhlmmyg nerfiqylas rntlfnlnny ldksamqgyd
      121 mstfirrysr ylnekalsyr lvavdftkmk rgidgvmrtm naekllktlp iiqnqldall
      181 dfdanpnelt ngvinaafml lfkdsirlfa aynegiinll eryfdmkknq ckegldiykk
      241 flarmtklse flkvaeqvgi dqgdipdltq apsslleale qhlasvegkk tkevsaasra
      301 salssavstl antgmsfsrm dekekqqale eeqarlqalk eqrlreisvv snstsssasp
      361 stlsgksvnt avaadifavp apttnsmpnl ssdlfdlqpa fvptvqstpa istsansawg
      421 gpfsssngcv gspphldifd mkpveeavks ttpfinstfs skqtvelfsd dfsshkptyg
      481 slyqpltvdg falhsappst tsstitvdfd avfggkstap eyktasdevl qptvppqsqr
      541 atsanqqsgk ilgndldssl anlvgnlgfg gtpskrsdmq wtqptekklt ggtnwqakts
      601 tsttwnptpl ptiphmngvh ypgyvpapit yplttpqvpv ygmvppqiga aplmapqsmm
      661 ytqpglrptn pfapvsetqi qfm
//
LOCUS       XP_053931400             675 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphatidylinositol-binding clathrin assembly protein isoform X2
            [Cuculus canorus].
ACCESSION   XP_053931400
VERSION     XP_053931400.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075425.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..675
                     /product="phosphatidylinositol-binding clathrin assembly
                     protein isoform X2"
                     /calculated_mol_wt=73498
     Region          22..283
                     /region_name="ANTH"
                     /note="ANTH domain; pfam07651"
                     /db_xref="CDD:400137"
     Site            order(29,39,41..42)
                     /site_type="other"
                     /note="PtdIns(4,5)P2-binding site [chemical binding]"
                     /db_xref="CDD:340782"
     CDS             1..675
                     /gene="LOC104060500"
                     /coded_by="XM_054075425.1:225..2252"
                     /db_xref="GeneID:104060500"
ORIGIN      
        1 mmsgqsitdr iaaaqhsvtg savakavcka tthevmgpkk khldyliqct nemnvnipql
       61 admlfertan sswvvvfkal itthhlmmyg nerfiqylas rntlfnlnny ldksamqgyd
      121 mstfirrysr ylnekalsyr lvavdftkmk rgidgvmrtm naekllktlp iiqnqldall
      181 dfdanpnelt ngvinaafml lfkdsirlfa aynegiinll eryfdmkknq ckegldiykk
      241 flarmtklse flkvaeqvgi dqgdipdltq apsslleale qhlasvegkk tkevsaasra
      301 salssavstl antgmsfsrm dekekqqale eeqarlqalk eqrlreisvv snstsssasp
      361 stlsgksvnt avaadifavp apttnsmpnl ssdlfdlqpa fvptvqstpa istsansawg
      421 gpfsssngcv gspphldifd mkpveeavks ttpfinstfs skqtvelfsd dfsshkptyg
      481 slyqpltvdg falhsappst tsstitvdfd avfggkstap eyktasdevl qptvppqsqr
      541 atsanqqsgk ilgndldssl anlvgnlgfg gtpskrsdmq wtqptekklt ggtnwqakts
      601 tsttwnptpl ptiphmvpap ityplttpqv pvygmvppqi gaaplmapqs mmytqpglrp
      661 tnpfapvset qiqfm
//
LOCUS       XP_053931401             631 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphatidylinositol-binding clathrin assembly protein isoform X3
            [Cuculus canorus].
ACCESSION   XP_053931401
VERSION     XP_053931401.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075426.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..631
                     /product="phosphatidylinositol-binding clathrin assembly
                     protein isoform X3"
                     /calculated_mol_wt=68845
     Region          1..231
                     /region_name="ANTH"
                     /note="ANTH domain; pfam07651"
                     /db_xref="CDD:400137"
     CDS             1..631
                     /gene="LOC104060500"
                     /coded_by="XM_054075426.1:43..1938"
                     /db_xref="GeneID:104060500"
ORIGIN      
        1 mnvnipqlad mlfertanss wvvvfkalit thhlmmygne rfiqylasrn tlfnlnnyld
       61 ksamqgydms tfirrysryl nekalsyrlv avdftkmkrg idgvmrtmna ekllktlpii
      121 qnqldalldf danpneltng vinaafmllf kdsirlfaay negiinller yfdmkknqck
      181 egldiykkfl armtklsefl kvaeqvgidq gdipdltqap ssllealeqh lasvegkktk
      241 evsaasrasa lssavstlan tgmsfsrmde kekqqaleee qarlqalkeq rlreisvvsn
      301 stsssaspst lsgksvntav aadifavpap ttnsmpnlss dlfdlqpafv ptvqstpais
      361 tsansawggp fsssngcvgs pphldifdmk pveeavkstt pfinstfssk qtvelfsddf
      421 sshkptygsl yqpltvdgfa lhsappstts stitvdfdav fggkstapey ktasdevlqp
      481 tvppqsqrat sanqqsgkil gndldsslan lvgnlgfggt pskrsdmqwt qptekkltgg
      541 tnwqaktsts ttwnptplpt iphmngvhyp gyvpapityp lttpqvpvyg mvppqigaap
      601 lmapqsmmyt qpglrptnpf apvsetqiqf m
//
LOCUS       XP_053931402             614 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphatidylinositol-binding clathrin assembly protein isoform X4
            [Cuculus canorus].
ACCESSION   XP_053931402
VERSION     XP_053931402.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075427.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..614
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..614
                     /product="phosphatidylinositol-binding clathrin assembly
                     protein isoform X4"
                     /calculated_mol_wt=66903
     Region          22..283
                     /region_name="ANTH"
                     /note="ANTH domain; pfam07651"
                     /db_xref="CDD:400137"
     Site            order(29,39,41..42)
                     /site_type="other"
                     /note="PtdIns(4,5)P2-binding site [chemical binding]"
                     /db_xref="CDD:340782"
     CDS             1..614
                     /gene="LOC104060500"
                     /coded_by="XM_054075427.1:224..2068"
                     /db_xref="GeneID:104060500"
ORIGIN      
        1 mmsgqsitdr iaaaqhsvtg savakavcka tthevmgpkk khldyliqct nemnvnipql
       61 admlfertan sswvvvfkal itthhlmmyg nerfiqylas rntlfnlnny ldksamqgyd
      121 mstfirrysr ylnekalsyr lvavdftkmk rgidgvmrtm naekllktlp iiqnqldall
      181 dfdanpnelt ngvinaafml lfkdsirlfa aynegiinll eryfdmkknq ckegldiykk
      241 flarmtklse flkvaeqvgi dqgdipdltq apsslleale qhlasvegkk tkevsaasra
      301 salssavstl antgmsfsrm dekekqqale eeqarlqalk eqrlreisvv snstsssasp
      361 stlsgksvnt avaadifavp apttnsmpnl ssdlfdlqpa fvptvqstpa istsansawg
      421 gfalhsapps ttsstitvdf davfggksta peyktasdev lqptvppqsq ratsanqqsg
      481 kilgndldss lanlvgnlgf ggtpskrsdm qwtqptekkl tggtnwqakt ststtwnptp
      541 lptiphmngv hypgyvpapi typlttpqvp vygmvppqig aaplmapqsm mytqpglrpt
      601 npfapvsetq iqfm
//
LOCUS       XP_053931403             568 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphatidylinositol-binding clathrin assembly protein isoform X5
            [Cuculus canorus].
ACCESSION   XP_053931403
VERSION     XP_053931403.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075428.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..568
                     /product="phosphatidylinositol-binding clathrin assembly
                     protein isoform X5"
                     /calculated_mol_wt=61496
     Region          <3..168
                     /region_name="VHS_ENTH_ANTH"
                     /note="VHS, ENTH and ANTH domain superfamily; cl02544"
                     /db_xref="CDD:470608"
     CDS             1..568
                     /gene="LOC104060500"
                     /coded_by="XM_054075428.1:345..2051"
                     /db_xref="GeneID:104060500"
ORIGIN      
        1 mqgydmstfi rrysrylnek alsyrlvavd ftkmkrgidg vmrtmnaekl lktlpiiqnq
       61 ldalldfdan pneltngvin aafmllfkds irlfaayneg iinlleryfd mkknqckegl
      121 diykkflarm tklseflkva eqvgidqgdi pdltqapssl lealeqhlas vegkktkevs
      181 aasrasalss avstlantgm sfsrmdekek qqaleeeqar lqalkeqrlr eisvvsnsts
      241 ssaspstlsg ksvntavaad ifavpapttn smpnlssdlf dlqpafvptv qstpaistsa
      301 nsawggpfss sngcvgspph ldifdmkpve eavksttpfi nstfsskqtv elfsddfssh
      361 kptygslyqp ltvdgfalhs appsttssti tvdfdavfgg kstapeykta sdevlqptvp
      421 pqsqratsan qqsgkilgnd ldsslanlvg nlgfggtpsk rsdmqwtqpt ekkltggtnw
      481 qaktststtw nptplptiph mngvhypgyv papitypltt pqvpvygmvp pqigaaplma
      541 pqsmmytqpg lrptnpfapv setqiqfm
//
LOCUS       XP_053931404             606 aa            linear   VRT 09-MAR-2023
DEFINITION  phosphatidylinositol-binding clathrin assembly protein isoform X6
            [Cuculus canorus].
ACCESSION   XP_053931404
VERSION     XP_053931404.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075429.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..606
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..606
                     /product="phosphatidylinositol-binding clathrin assembly
                     protein isoform X6"
                     /calculated_mol_wt=66015
     Region          22..283
                     /region_name="ANTH"
                     /note="ANTH domain; pfam07651"
                     /db_xref="CDD:400137"
     Site            order(29,39,41..42)
                     /site_type="other"
                     /note="PtdIns(4,5)P2-binding site [chemical binding]"
                     /db_xref="CDD:340782"
     Region          <370..604
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     CDS             1..606
                     /gene="LOC104060500"
                     /coded_by="XM_054075429.1:223..2043"
                     /db_xref="GeneID:104060500"
ORIGIN      
        1 mmsgqsitdr iaaaqhsvtg savakavcka tthevmgpkk khldyliqct nemnvnipql
       61 admlfertan sswvvvfkal itthhlmmyg nerfiqylas rntlfnlnny ldksamqgyd
      121 mstfirrysr ylnekalsyr lvavdftkmk rgidgvmrtm naekllktlp iiqnqldall
      181 dfdanpnelt ngvinaafml lfkdsirlfa aynegiinll eryfdmkknq ckegldiykk
      241 flarmtklse flkvaeqvgi dqgdipdltq apsslleale qhlasvegkk tkevsaasra
      301 salssavstl antgmsfsrm dekekqqale eeqarlqalk eqrlreisvv snstsssasp
      361 stlsgksvnt avaadifavp apttnsmpnl ssdlfdlqpa fvptvqstpa istsansawg
      421 gfalhsapps ttsstitvdf davfggksta peyktasdev lqptvppqsq ratsanqqsg
      481 kilgndldss lanlvgnlgf ggtpskrsdm qwtqptekkl tggtnwqakt ststtwnptp
      541 lptiphmvpa pityplttpq vpvygmvppq igaaplmapq smmytqpglr ptnpfapvse
      601 tqiqfm
//
LOCUS       XP_053931405             581 aa            linear   VRT 09-MAR-2023
DEFINITION  A-kinase anchor protein 17B [Cuculus canorus].
ACCESSION   XP_053931405
VERSION     XP_053931405.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075430.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..581
                     /product="A-kinase anchor protein 17B"
                     /calculated_mol_wt=66150
     CDS             1..581
                     /gene="LOC104064029"
                     /coded_by="XM_054075430.1:380..2125"
                     /db_xref="GeneID:104064029"
ORIGIN      
        1 mpeweerksl laqrrvesir lltvllnrvk gfvqlasqkv dpslgvrkdd afsetalkdt
       61 hrelinshyh ipkevkheee fkrllspkgs slhseegdvs dfhastchvv rtilndrsta
      121 lsvdrrlskg aynssgcgsl litvtqdcrv ikalggrdcp alnaahrqta sdedcckklk
      181 vyetdefihy llnyyqtpry arvclepept vntcwwkrvv sdgdrgfdis lsnkhgphfr
      241 emsplhnldt rncssdgdyr lvitvgefds tdtvlenkty rgsfakklqv rrndslavdn
      301 lqhagpnlsl gctavtcdke feqehgsdeg tiphntcrsa srfndlleei sdskyfrear
      361 sdsmkrterr ceeiysncnk gclpprdger kllvylknvt legteedssr csfcnnsvhe
      421 glarqhehrl kksckrsssk lrhegqkser qsreeernar kmkkkrkkls snvvsdecgf
      481 sdtdsctqle slrkiqrkce kvfhkkvkfk tlhtddsspd vtpcdgsllq eslqrtgder
      541 klmlrremda dvrgcplfpl eiiqtnpcsd tfcgaeprrg c
//
LOCUS       XP_009564610             189 aa            linear   VRT 09-MAR-2023
DEFINITION  membrane-associated progesterone receptor component 1 [Cuculus
            canorus].
ACCESSION   XP_009564610
VERSION     XP_009564610.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566315.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564610.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..189
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..189
                     /product="membrane-associated progesterone receptor
                     component 1"
                     /calculated_mol_wt=20757
     Region          69..132
                     /region_name="Cyt-b5"
                     /note="Cytochrome b5-like Heme/Steroid binding domain;
                     pfam00173"
                     /db_xref="CDD:459698"
     CDS             1..189
                     /gene="PGRMC1"
                     /coded_by="XM_009566315.2:16..585"
                     /db_xref="GeneID:104064027"
ORIGIN      
        1 mageevagee saggegglll emvssplnls lmglclflfy qivrgergaa pagegepppl
       61 prmrrrdftv aelrafdgvr dprilmavng kvfdvtkgsk fygpdgpygi fagrdasrgl
      121 atfcldkeal rddyddlsdl natqqetlrd wesqftfkyh hvgkllkege eptvysdeee
      181 kdaqdakkd
//
LOCUS       XP_053931406             558 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase PAK 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931406
VERSION     XP_053931406.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075431.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..558
                     /product="serine/threonine-protein kinase PAK 3 isoform
                     X1"
                     /calculated_mol_wt=62089
     Region          69..141
                     /region_name="PBD"
                     /note="P21-Rho-binding domain; pfam00786"
                     /db_xref="CDD:395634"
     Site            order(70,73,76,78,81,113,117)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238526"
     Region          262..558
                     /region_name="STKc_PAK3"
                     /note="Catalytic domain of the Protein Serine/Threonine
                     Kinase, p21-activated kinase 3; cd06656"
                     /db_xref="CDD:132987"
     Site            order(288..292,296,309,311,340,356..360,362..363,366,401,
                     403..406,408,418..419,422,435..439,441,468,477..479)
                     /site_type="active"
                     /db_xref="CDD:132987"
     Site            order(288..292,296,309,311,340,356..360,362..363,366,
                     405..406,408,418..419)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:132987"
     Site            order(291..292,401,403..405,422,435..439,441,468,477..479)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:132987"
     Site            order(293,327,396,398..401,419..420,447..448,450,455,480,
                     483,486)
                     /site_type="other"
                     /note="AID interaction site [polypeptide binding]"
                     /db_xref="CDD:132987"
     Site            418..441
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:132987"
     CDS             1..558
                     /gene="PAK3"
                     /coded_by="XM_054075431.1:208..1884"
                     /db_xref="GeneID:104058294"
ORIGIN      
        1 msdsldieek ppapplrmns nnrdssalnh sskplpmape eknkkarlrs ifpgggdktn
       61 kkkekerpei slpsdfehti hvgfdavtge ftpdlygsqm ctgklpegip eqwarllqts
      121 nitkleqkkn pqavldvlkf ydsketvnnq kymsftsgdk sahgyieahp sstktasepp
      181 lapsvseeed eddeeeeddn epppviaprp ehtksiytrs viepaaapap akeattpqpe
      241 nsntntlyrn tdrqrkkskm tdeeileklr sivsvgdpkk kytrfekigq gasgtvytai
      301 diatgqevai kqmnlqqqpk keliineilv mrenknpniv nyldsylvgd elwvvmeyla
      361 ggsltdvvte tcmdegqiaa vcreclqald flhsnqvihr diksdnillg mdgsvkltdf
      421 gfcaqitpeq skrstmvgtp ywmapevvtr kaygpkvdiw slgimaiemv egeppylnen
      481 plralyliat ngtpelqnpe rlsavfrdfl ncclemdvdr rgsakellqh pflklakpls
      541 sltpliiaak eaiknssr
//
LOCUS       XP_053931407             558 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase PAK 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931407
VERSION     XP_053931407.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075432.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..558
                     /product="serine/threonine-protein kinase PAK 3 isoform
                     X1"
                     /calculated_mol_wt=62089
     Region          69..141
                     /region_name="PBD"
                     /note="P21-Rho-binding domain; pfam00786"
                     /db_xref="CDD:395634"
     Site            order(70,73,76,78,81,113,117)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238526"
     Region          262..558
                     /region_name="STKc_PAK3"
                     /note="Catalytic domain of the Protein Serine/Threonine
                     Kinase, p21-activated kinase 3; cd06656"
                     /db_xref="CDD:132987"
     Site            order(288..292,296,309,311,340,356..360,362..363,366,401,
                     403..406,408,418..419,422,435..439,441,468,477..479)
                     /site_type="active"
                     /db_xref="CDD:132987"
     Site            order(288..292,296,309,311,340,356..360,362..363,366,
                     405..406,408,418..419)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:132987"
     Site            order(291..292,401,403..405,422,435..439,441,468,477..479)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:132987"
     Site            order(293,327,396,398..401,419..420,447..448,450,455,480,
                     483,486)
                     /site_type="other"
                     /note="AID interaction site [polypeptide binding]"
                     /db_xref="CDD:132987"
     Site            418..441
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:132987"
     CDS             1..558
                     /gene="PAK3"
                     /coded_by="XM_054075432.1:156..1832"
                     /db_xref="GeneID:104058294"
ORIGIN      
        1 msdsldieek ppapplrmns nnrdssalnh sskplpmape eknkkarlrs ifpgggdktn
       61 kkkekerpei slpsdfehti hvgfdavtge ftpdlygsqm ctgklpegip eqwarllqts
      121 nitkleqkkn pqavldvlkf ydsketvnnq kymsftsgdk sahgyieahp sstktasepp
      181 lapsvseeed eddeeeeddn epppviaprp ehtksiytrs viepaaapap akeattpqpe
      241 nsntntlyrn tdrqrkkskm tdeeileklr sivsvgdpkk kytrfekigq gasgtvytai
      301 diatgqevai kqmnlqqqpk keliineilv mrenknpniv nyldsylvgd elwvvmeyla
      361 ggsltdvvte tcmdegqiaa vcreclqald flhsnqvihr diksdnillg mdgsvkltdf
      421 gfcaqitpeq skrstmvgtp ywmapevvtr kaygpkvdiw slgimaiemv egeppylnen
      481 plralyliat ngtpelqnpe rlsavfrdfl ncclemdvdr rgsakellqh pflklakpls
      541 sltpliiaak eaiknssr
//
LOCUS       XP_053931408             558 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase PAK 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931408
VERSION     XP_053931408.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075433.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..558
                     /product="serine/threonine-protein kinase PAK 3 isoform
                     X1"
                     /calculated_mol_wt=62089
     Region          69..141
                     /region_name="PBD"
                     /note="P21-Rho-binding domain; pfam00786"
                     /db_xref="CDD:395634"
     Site            order(70,73,76,78,81,113,117)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238526"
     Region          262..558
                     /region_name="STKc_PAK3"
                     /note="Catalytic domain of the Protein Serine/Threonine
                     Kinase, p21-activated kinase 3; cd06656"
                     /db_xref="CDD:132987"
     Site            order(288..292,296,309,311,340,356..360,362..363,366,401,
                     403..406,408,418..419,422,435..439,441,468,477..479)
                     /site_type="active"
                     /db_xref="CDD:132987"
     Site            order(288..292,296,309,311,340,356..360,362..363,366,
                     405..406,408,418..419)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:132987"
     Site            order(291..292,401,403..405,422,435..439,441,468,477..479)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:132987"
     Site            order(293,327,396,398..401,419..420,447..448,450,455,480,
                     483,486)
                     /site_type="other"
                     /note="AID interaction site [polypeptide binding]"
                     /db_xref="CDD:132987"
     Site            418..441
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:132987"
     CDS             1..558
                     /gene="PAK3"
                     /coded_by="XM_054075433.1:253..1929"
                     /db_xref="GeneID:104058294"
ORIGIN      
        1 msdsldieek ppapplrmns nnrdssalnh sskplpmape eknkkarlrs ifpgggdktn
       61 kkkekerpei slpsdfehti hvgfdavtge ftpdlygsqm ctgklpegip eqwarllqts
      121 nitkleqkkn pqavldvlkf ydsketvnnq kymsftsgdk sahgyieahp sstktasepp
      181 lapsvseeed eddeeeeddn epppviaprp ehtksiytrs viepaaapap akeattpqpe
      241 nsntntlyrn tdrqrkkskm tdeeileklr sivsvgdpkk kytrfekigq gasgtvytai
      301 diatgqevai kqmnlqqqpk keliineilv mrenknpniv nyldsylvgd elwvvmeyla
      361 ggsltdvvte tcmdegqiaa vcreclqald flhsnqvihr diksdnillg mdgsvkltdf
      421 gfcaqitpeq skrstmvgtp ywmapevvtr kaygpkvdiw slgimaiemv egeppylnen
      481 plralyliat ngtpelqnpe rlsavfrdfl ncclemdvdr rgsakellqh pflklakpls
      541 sltpliiaak eaiknssr
//
LOCUS       XP_053931409             558 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase PAK 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931409
VERSION     XP_053931409.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075434.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..558
                     /product="serine/threonine-protein kinase PAK 3 isoform
                     X1"
                     /calculated_mol_wt=62089
     Region          69..141
                     /region_name="PBD"
                     /note="P21-Rho-binding domain; pfam00786"
                     /db_xref="CDD:395634"
     Site            order(70,73,76,78,81,113,117)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238526"
     Region          262..558
                     /region_name="STKc_PAK3"
                     /note="Catalytic domain of the Protein Serine/Threonine
                     Kinase, p21-activated kinase 3; cd06656"
                     /db_xref="CDD:132987"
     Site            order(288..292,296,309,311,340,356..360,362..363,366,401,
                     403..406,408,418..419,422,435..439,441,468,477..479)
                     /site_type="active"
                     /db_xref="CDD:132987"
     Site            order(288..292,296,309,311,340,356..360,362..363,366,
                     405..406,408,418..419)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:132987"
     Site            order(291..292,401,403..405,422,435..439,441,468,477..479)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:132987"
     Site            order(293,327,396,398..401,419..420,447..448,450,455,480,
                     483,486)
                     /site_type="other"
                     /note="AID interaction site [polypeptide binding]"
                     /db_xref="CDD:132987"
     Site            418..441
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:132987"
     CDS             1..558
                     /gene="PAK3"
                     /coded_by="XM_054075434.1:362..2038"
                     /db_xref="GeneID:104058294"
ORIGIN      
        1 msdsldieek ppapplrmns nnrdssalnh sskplpmape eknkkarlrs ifpgggdktn
       61 kkkekerpei slpsdfehti hvgfdavtge ftpdlygsqm ctgklpegip eqwarllqts
      121 nitkleqkkn pqavldvlkf ydsketvnnq kymsftsgdk sahgyieahp sstktasepp
      181 lapsvseeed eddeeeeddn epppviaprp ehtksiytrs viepaaapap akeattpqpe
      241 nsntntlyrn tdrqrkkskm tdeeileklr sivsvgdpkk kytrfekigq gasgtvytai
      301 diatgqevai kqmnlqqqpk keliineilv mrenknpniv nyldsylvgd elwvvmeyla
      361 ggsltdvvte tcmdegqiaa vcreclqald flhsnqvihr diksdnillg mdgsvkltdf
      421 gfcaqitpeq skrstmvgtp ywmapevvtr kaygpkvdiw slgimaiemv egeppylnen
      481 plralyliat ngtpelqnpe rlsavfrdfl ncclemdvdr rgsakellqh pflklakpls
      541 sltpliiaak eaiknssr
//
LOCUS       XP_053931410             558 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase PAK 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931410
VERSION     XP_053931410.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075435.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..558
                     /product="serine/threonine-protein kinase PAK 3 isoform
                     X1"
                     /calculated_mol_wt=62089
     Region          69..141
                     /region_name="PBD"
                     /note="P21-Rho-binding domain; pfam00786"
                     /db_xref="CDD:395634"
     Site            order(70,73,76,78,81,113,117)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238526"
     Region          262..558
                     /region_name="STKc_PAK3"
                     /note="Catalytic domain of the Protein Serine/Threonine
                     Kinase, p21-activated kinase 3; cd06656"
                     /db_xref="CDD:132987"
     Site            order(288..292,296,309,311,340,356..360,362..363,366,401,
                     403..406,408,418..419,422,435..439,441,468,477..479)
                     /site_type="active"
                     /db_xref="CDD:132987"
     Site            order(288..292,296,309,311,340,356..360,362..363,366,
                     405..406,408,418..419)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:132987"
     Site            order(291..292,401,403..405,422,435..439,441,468,477..479)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:132987"
     Site            order(293,327,396,398..401,419..420,447..448,450,455,480,
                     483,486)
                     /site_type="other"
                     /note="AID interaction site [polypeptide binding]"
                     /db_xref="CDD:132987"
     Site            418..441
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:132987"
     CDS             1..558
                     /gene="PAK3"
                     /coded_by="XM_054075435.1:42..1718"
                     /db_xref="GeneID:104058294"
ORIGIN      
        1 msdsldieek ppapplrmns nnrdssalnh sskplpmape eknkkarlrs ifpgggdktn
       61 kkkekerpei slpsdfehti hvgfdavtge ftpdlygsqm ctgklpegip eqwarllqts
      121 nitkleqkkn pqavldvlkf ydsketvnnq kymsftsgdk sahgyieahp sstktasepp
      181 lapsvseeed eddeeeeddn epppviaprp ehtksiytrs viepaaapap akeattpqpe
      241 nsntntlyrn tdrqrkkskm tdeeileklr sivsvgdpkk kytrfekigq gasgtvytai
      301 diatgqevai kqmnlqqqpk keliineilv mrenknpniv nyldsylvgd elwvvmeyla
      361 ggsltdvvte tcmdegqiaa vcreclqald flhsnqvihr diksdnillg mdgsvkltdf
      421 gfcaqitpeq skrstmvgtp ywmapevvtr kaygpkvdiw slgimaiemv egeppylnen
      481 plralyliat ngtpelqnpe rlsavfrdfl ncclemdvdr rgsakellqh pflklakpls
      541 sltpliiaak eaiknssr
//
LOCUS       XP_053931411             543 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase PAK 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931411
VERSION     XP_053931411.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075436.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..543
                     /product="serine/threonine-protein kinase PAK 3 isoform
                     X2"
                     /calculated_mol_wt=60468
     Region          69..126
                     /region_name="PBD"
                     /note="P21-Rho-binding domain; pfam00786"
                     /db_xref="CDD:395634"
     Site            order(70,73,76,78,81,98,102)
                     /site_type="other"
                     /note="GTPase interaction site [polypeptide binding]"
                     /db_xref="CDD:238526"
     Region          247..543
                     /region_name="STKc_PAK3"
                     /note="Catalytic domain of the Protein Serine/Threonine
                     Kinase, p21-activated kinase 3; cd06656"
                     /db_xref="CDD:132987"
     Site            order(273..277,281,294,296,325,341..345,347..348,351,386,
                     388..391,393,403..404,407,420..424,426,453,462..464)
                     /site_type="active"
                     /db_xref="CDD:132987"
     Site            order(273..277,281,294,296,325,341..345,347..348,351,
                     390..391,393,403..404)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:132987"
     Site            order(276..277,386,388..390,407,420..424,426,453,462..464)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:132987"
     Site            order(278,312,381,383..386,404..405,432..433,435,440,465,
                     468,471)
                     /site_type="other"
                     /note="AID interaction site [polypeptide binding]"
                     /db_xref="CDD:132987"
     Site            403..426
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:132987"
     CDS             1..543
                     /gene="PAK3"
                     /coded_by="XM_054075436.1:199..1830"
                     /db_xref="GeneID:104058294"
ORIGIN      
        1 msdsldieek ppapplrmns nnrdssalnh sskplpmape eknkkarlrs ifpgggdktn
       61 kkkekerpei slpsdfehti hvgfdavtge ftgipeqwar llqtsnitkl eqkknpqavl
      121 dvlkfydske tvnnqkymsf tsgdksahgy ieahpsstkt asepplapsv seeededdee
      181 eeddnepppv iaprpehtks iytrsviepa aapapakeat tpqpensntn tlyrntdrqr
      241 kkskmtdeei leklrsivsv gdpkkkytrf ekigqgasgt vytaidiatg qevaikqmnl
      301 qqqpkkelii neilvmrenk npnivnylds ylvgdelwvv meylaggslt dvvtetcmde
      361 gqiaavcrec lqaldflhsn qvihrdiksd nillgmdgsv kltdfgfcaq itpeqskrst
      421 mvgtpywmap evvtrkaygp kvdiwslgim aiemvegepp ylnenplral yliatngtpe
      481 lqnperlsav frdflnccle mdvdrrgsak ellqhpflkl akplssltpl iiaakeaikn
      541 ssr
//
LOCUS       XP_053931412             309 aa            linear   VRT 09-MAR-2023
DEFINITION  TSC22 domain family protein 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931412
VERSION     XP_053931412.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075437.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..309
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..309
                     /product="TSC22 domain family protein 3 isoform X1"
                     /calculated_mol_wt=33062
     CDS             1..309
                     /gene="TSC22D3"
                     /coded_by="XM_054075437.1:9160..10089"
                     /db_xref="GeneID:104060498"
ORIGIN      
        1 mgewglavgr vgdtgrdspv lcsaspaaqq lrtgqagagt grmmgpswge allpramlpl
       61 erscflasph qicvsghprv pgrgswaaqc piqgacvlhc lrhcsphsal ggrdaicsqq
      121 qphctgpqfp frmmqfpsah pwpfpqgrhm aaylpggapq vfpctgtlqp garhlqhlwd
      181 qgiwsslqhl agdcalastv afldaapwrg llqdlvqhqp ppwfakneph gvhgssrata
      241 wvlskvpagp gpegsdkrws wqgspgrmak hggsitcsrq cqpqrfggpc lhprvetrll
      301 yvqvavqvq
//
LOCUS       XP_053931413             206 aa            linear   VRT 09-MAR-2023
DEFINITION  TSC22 domain family protein 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931413
VERSION     XP_053931413.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075438.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..206
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..206
                     /product="TSC22 domain family protein 3 isoform X2"
                     /calculated_mol_wt=22381
     Region          124..206
                     /region_name="ZIP_TSC22D3"
                     /note="leucine zipper domain found in TSC22 domain family
                     protein 3; cd21940"
                     /db_xref="CDD:409280"
     Site            order(138..140,143,146..147,150..151,153..154,157..158,
                     160..161,164..165,168,172..173)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:409280"
     CDS             1..206
                     /gene="TSC22D3"
                     /coded_by="XM_054075438.1:166..786"
                     /db_xref="GeneID:104060498"
ORIGIN      
        1 mssspaeecr spvgldccsc cldlanrsgl eegaggennn lgsptvssfr qlqeqlvrkn
       61 lntdklssim rqdslepvvr dpcylfnqgi cnrnidqtll silllfhsas gasvvaidnk
      121 ieqamdlvkn hlmyavreev evlkeqikel leknsqlere nsllktlasp eqlekfqsrl
      181 paevlcpeeq spgaaapaqh sggsav
//
LOCUS       XP_009560595             139 aa            linear   VRT 09-MAR-2023
DEFINITION  TSC22 domain family protein 3 isoform X3 [Cuculus canorus].
ACCESSION   XP_009560595
VERSION     XP_009560595.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009562300.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..139
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..139
                     /product="TSC22 domain family protein 3 isoform X3"
                     /calculated_mol_wt=14973
     Region          57..139
                     /region_name="ZIP_TSC22D3"
                     /note="leucine zipper domain found in TSC22 domain family
                     protein 3; cd21940"
                     /db_xref="CDD:409280"
     Site            order(71..73,76,79..80,83..84,86..87,90..91,93..94,97..98,
                     101,105..106)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:409280"
     CDS             1..139
                     /gene="TSC22D3"
                     /coded_by="XM_009562300.2:65..484"
                     /db_xref="GeneID:104060498"
ORIGIN      
        1 mstgvyqspm evavyqlhnf sisffssllg gdvvsvkldn sasgasvvai dnkieqamdl
       61 vknhlmyavr eevevlkeqi kelleknsql erensllktl aspeqlekfq srlpaevlcp
      121 eeqspgaaap aqhsggsav
//
LOCUS       XP_053931414            1205 aa            linear   VRT 09-MAR-2023
DEFINITION  protein diaphanous homolog 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931414
VERSION     XP_053931414.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075439.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1205
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1205
                     /product="protein diaphanous homolog 2 isoform X1"
                     /calculated_mol_wt=135317
     Region          94..284
                     /region_name="Drf_GBD"
                     /note="Diaphanous GTPase-binding Domain; pfam06371"
                     /db_xref="CDD:461886"
     Region          292..480
                     /region_name="Drf_FH3"
                     /note="Diaphanous FH3 Domain; pfam06367"
                     /db_xref="CDD:461885"
     Region          732..1106
                     /region_name="FH2"
                     /note="Formin Homology 2 Domain; pfam02181"
                     /db_xref="CDD:396655"
     CDS             1..1205
                     /gene="DIAPH2"
                     /coded_by="XM_054075439.1:128..3745"
                     /db_xref="GeneID:104055084"
ORIGIN      
        1 megqvgaggg geeplgsgra krsgraaeee srnkpklniq iktladdvrd ritsfrksav
       61 kkekpliqhp idsqpsisei plaqalvder cmnlsekevm dlfekmmedm nlneerkapl
      121 rdkdlttkre mvvqyisata ksivgskvpg glknskhect lssqeyihel rsgiseekll
      181 ncleslrvsl tsnpvswvnn fgheglglll dvleklldkk qqesidkknq hkliqclkaf
      241 mnnkyglqri lgdersllll sraidpkqph mmtetvkils alcivgeeni ldkllgaitt
      301 aaerhnrerf sqiveglenh eflqlqvacm qlinalvtsp edldfrihlr neflrcglkk
      361 ilpglkdken eeldiqlkvf denkeedlie lshrlndira emddvnevfh llynmlkdts
      421 senyflsilq hfllirndyy vrpqyykiie ecvsqivlhc sgmdpdfkcr grmdvdfthl
      481 idacvdkakv eesekkaaef srkfdeefta rqeahaelqk reekikelet eikqlrtqkl
      541 tetapsgqlt evaplpptqt nenipppppl pggvmppppp plpggvmppp ppppplpgga
      601 mippppplpg gamipppppl pggamipppp plpggamipp ppplpggami ppppplpgga
      661 vpppppplpg gavppppppl pggamppppp plpggavppp ppfggppmpp plggvpfapf
      721 pvipalphgm kekkkyklev amkrinwski epqeigensf wvkaeedkfe npelfaklal
      781 tfgtqmkakk tveeseekkt vqskkkirel rildgktaqn lsiflgsfrl pyeeikniil
      841 evdeeklses liqnlvknlp eqkelnalae lkdeyndlae peqfgvvmss vkmlrsrlng
      901 ilfrlmfeeh vnnikpdima vtlaceelkk sesfskllel vlflgnymns gsrnaqslgf
      961 nisflckird tkssdqkttl lhflaeicee nyrdilkfpd elqhvesask vsaqtlksnl
     1021 dsmnnqiqrl endiknfpkt qdehdkfvek mssfaesare qyeklsnmhn nmtklyenlg
     1081 eyftfdpkai sieeffgdls nfrtlfleal kennkrreme ektkraklak ekaererler
     1141 qkkkqqlidm nkegdetgvm dsllealqsg aafrdrrkrt prpqdnrrvt lersrsrhng
     1201 tiaav
//
LOCUS       XP_053931415            1198 aa            linear   VRT 09-MAR-2023
DEFINITION  protein diaphanous homolog 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931415
VERSION     XP_053931415.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075440.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1198
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1198
                     /product="protein diaphanous homolog 2 isoform X2"
                     /calculated_mol_wt=134636
     Region          94..277
                     /region_name="Drf_GBD"
                     /note="Diaphanous GTPase-binding Domain; pfam06371"
                     /db_xref="CDD:461886"
     Region          285..473
                     /region_name="Drf_FH3"
                     /note="Diaphanous FH3 Domain; pfam06367"
                     /db_xref="CDD:461885"
     Region          725..1099
                     /region_name="FH2"
                     /note="Formin Homology 2 Domain; pfam02181"
                     /db_xref="CDD:396655"
     CDS             1..1198
                     /gene="DIAPH2"
                     /coded_by="XM_054075440.1:129..3725"
                     /db_xref="GeneID:104055084"
ORIGIN      
        1 megqvgaggg geeplgsgra krsgraaeee srnkpklniq iktladdvrd ritsfrksav
       61 kkekpliqhp idsqpsisei plaqalvder cmnlsekevm dlfekmmedm nlneerkapl
      121 rdkdlttkre mvvqyisata ksgglknskh ectlssqeyi helrsgisee kllncleslr
      181 vsltsnpvsw vnnfgheglg llldvlekll dkkqqesidk knqhkliqcl kafmnnkygl
      241 qrilgdersl lllsraidpk qphmmtetvk ilsalcivge enildkllga ittaaerhnr
      301 erfsqivegl enheflqlqv acmqlinalv tspedldfri hlrneflrcg lkkilpglkd
      361 keneeldiql kvfdenkeed lielshrlnd iraemddvne vfhllynmlk dtssenyfls
      421 ilqhfllirn dyyvrpqyyk iieecvsqiv lhcsgmdpdf kcrgrmdvdf thlidacvdk
      481 akveesekka aefsrkfdee ftarqeahae lqkreekike leteikqlrt qkltetapsg
      541 qltevaplpp tqtnenippp pplpggvmpp pppplpggvm pppppppplp ggamippppp
      601 lpggamippp pplpggamip pppplpggam ippppplpgg amippppplp ggavpppppp
      661 lpggavpppp pplpggampp pppplpggav pppppfggpp mppplggvpf apfpvipalp
      721 hgmkekkkyk levamkrinw skiepqeige nsfwvkaeed kfenpelfak laltfgtqmk
      781 akktveesee kktvqskkki relrildgkt aqnlsiflgs frlpyeeikn iilevdeekl
      841 sesliqnlvk nlpeqkelna laelkdeynd laepeqfgvv mssvkmlrsr lngilfrlmf
      901 eehvnnikpd imavtlacee lkksesfskl lelvlflgny mnsgsrnaqs lgfnisflck
      961 irdtkssdqk ttllhflaei ceenyrdilk fpdelqhves askvsaqtlk snldsmnnqi
     1021 qrlendiknf pktqdehdkf vekmssfaes areqyeklsn mhnnmtklye nlgeyftfdp
     1081 kaisieeffg dlsnfrtlfl ealkennkrr emeektkrak lakekaerer lerqkkkqql
     1141 idmnkegdet gvmdslleal qsgaafrdrr krtprpqdnr rvtlersrsr hngtiaav
//
LOCUS       XP_053931416            1194 aa            linear   VRT 09-MAR-2023
DEFINITION  protein diaphanous homolog 2 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931416
VERSION     XP_053931416.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075441.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1194
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1194
                     /product="protein diaphanous homolog 2 isoform X3"
                     /calculated_mol_wt=134105
     Region          83..273
                     /region_name="Drf_GBD"
                     /note="Diaphanous GTPase-binding Domain; pfam06371"
                     /db_xref="CDD:461886"
     Region          281..469
                     /region_name="Drf_FH3"
                     /note="Diaphanous FH3 Domain; pfam06367"
                     /db_xref="CDD:461885"
     Region          721..1095
                     /region_name="FH2"
                     /note="Formin Homology 2 Domain; pfam02181"
                     /db_xref="CDD:396655"
     CDS             1..1194
                     /gene="DIAPH2"
                     /coded_by="XM_054075441.1:129..3713"
                     /db_xref="GeneID:104055084"
ORIGIN      
        1 megqvgaggg geeplgsgra krsgraaeee srnkpklrdr itsfrksavk kekpliqhpi
       61 dsqpsiseip laqalvderc mnlsekevmd lfekmmedmn lneerkaplr dkdlttkrem
      121 vvqyisatak sivgskvpgg lknskhectl ssqeyihelr sgiseeklln cleslrvslt
      181 snpvswvnnf gheglgllld vleklldkkq qesidkknqh kliqclkafm nnkyglqril
      241 gderslllls raidpkqphm mtetvkilsa lcivgeenil dkllgaitta aerhnrerfs
      301 qiveglenhe flqlqvacmq linalvtspe dldfrihlrn eflrcglkki lpglkdkene
      361 eldiqlkvfd enkeedliel shrlndirae mddvnevfhl lynmlkdtss enyflsilqh
      421 fllirndyyv rpqyykiiee cvsqivlhcs gmdpdfkcrg rmdvdfthli dacvdkakve
      481 esekkaaefs rkfdeeftar qeahaelqkr eekikelete ikqlrtqklt etapsgqlte
      541 vaplpptqtn enippppplp ggvmpppppp lpggvmpppp pppplpggam ippppplpgg
      601 amippppplp ggamippppp lpggamippp pplpggamip pppplpggav pppppplpgg
      661 avpppppplp ggampppppp lpggavpppp pfggppmppp lggvpfapfp vipalphgmk
      721 ekkkykleva mkrinwskie pqeigensfw vkaeedkfen pelfaklalt fgtqmkakkt
      781 veeseekktv qskkkirelr ildgktaqnl siflgsfrlp yeeikniile vdeeklsesl
      841 iqnlvknlpe qkelnalael kdeyndlaep eqfgvvmssv kmlrsrlngi lfrlmfeehv
      901 nnikpdimav tlaceelkks esfskllelv lflgnymnsg srnaqslgfn isflckirdt
      961 kssdqkttll hflaeiceen yrdilkfpde lqhvesaskv saqtlksnld smnnqiqrle
     1021 ndiknfpktq dehdkfvekm ssfaesareq yeklsnmhnn mtklyenlge yftfdpkais
     1081 ieeffgdlsn frtlflealk ennkrremee ktkraklake kaererlerq kkkqqlidmn
     1141 kegdetgvmd sllealqsga afrdrrkrtp rpqdnrrvtl ersrsrhngt iaav
//
LOCUS       XP_053931417             151 aa            linear   VRT 09-MAR-2023
DEFINITION  protein FAM162B [Cuculus canorus].
ACCESSION   XP_053931417
VERSION     XP_053931417.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075442.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..151
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..151
                     /product="protein FAM162B"
                     /calculated_mol_wt=16888
     Region          2..125
                     /region_name="DUF1075"
                     /note="Protein of unknown function (DUF1075); pfam06388"
                     /db_xref="CDD:461893"
     CDS             1..151
                     /gene="LOC104063705"
                     /coded_by="XM_054075442.1:1106..1561"
                     /db_xref="GeneID:104063705"
ORIGIN      
        1 mlgrllgcsp rlwrpmarpv lrptravgdk akgaqdtalq manpdykalk ndrsptnfdk
       61 kvlvwagrfk reedipkyis sevldaarns vrikvcyimi altllgclam vitgkeaakr
      121 dhtllmknve kkakwraeve kdqeaavvkp q
//
LOCUS       XP_053931418            1498 aa            linear   VRT 09-MAR-2023
DEFINITION  copper-transporting ATPase 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931418
VERSION     XP_053931418.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075443.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1498
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1498
                     /product="copper-transporting ATPase 1 isoform X1"
                     /calculated_mol_wt=162486
     Region          3..71
                     /region_name="CopZ"
                     /note="Copper chaperone CopZ [Inorganic ion transport and
                     metabolism]; COG2608"
                     /db_xref="CDD:442020"
     Region          171..233
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(176..178,181)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          272..334
                     /region_name="CopZ"
                     /note="Copper chaperone CopZ [Inorganic ion transport and
                     metabolism]; COG2608"
                     /db_xref="CDD:442020"
     Region          379..442
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(385..387,390)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          491..553
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(496..498,501)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          566..626
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(572..574,577)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          651..1386
                     /region_name="P-type_ATPase_Cu-like"
                     /note="P-type heavy metal-transporting ATPase, similar to
                     human copper-transporting ATPases, ATP7A and ATP7B;
                     cd02094"
                     /db_xref="CDD:319783"
     Site            order(999,1001,1363)
                     /site_type="other"
                     /note="putative Cu binding site [ion binding]"
                     /db_xref="CDD:319783"
     Site            order(1043..1045,1113,1180..1182,1212,1252..1254,1274,
                     1277,1280,1299,1302)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:319783"
     CDS             1..1498
                     /gene="ATP7A"
                     /coded_by="XM_054075443.1:30..4526"
                     /db_xref="GeneID:104058246"
ORIGIN      
        1 memksivisv egmtcnscvq tieqhvgkmn gihnvkvsle dknavviyds klqtpatlqe
       61 aiydmgfdat vpdpkaqpvl pdtifltipt qsaltskqic ntllqkkgiv dvkmssnqkt
      121 avvtfipsii ngkqitqmvp gvdlsisape vtpgvnedss csqassvvlr lkvegmtchs
      181 ctstiegkii klqgiqrikv sldnqeavvv yqphlitaee ikrqieavgf tatlkkqprp
      241 lklgavdler lrnaqtkgse malkensnvn dtktvvfrid gmhcnscvln iqstisalps
      301 vrsvvvslek ksaivsynpn linrdvlrka ieavspetfk vslpddcenv alfptlmspl
      361 kssrpalkda sqpltqvvvi niegmtcnsc vqsiegvisq kagvksvhvs lsnrngtiey
      421 dplqtcpedl rssieemgfd aslsartelp vaiaqpspev qleshktepl skvspahlar
      481 qetkniskcy vqvtgmtcas cvaniernlr redgihsilv almagkaevr ynpavihpst
      541 iaelirelgf gatvmencge gdgilelvvr gmtcascvhk iestlmktng vlycsvalat
      601 nkahvkydpe vigprdviqv ikdlgfntsl vkkdrsashl dhkqeirqwk rsfvvslvfc
      661 ipvmglmiym mvmdhqlada rahhnmtsee mealhssmvl eyqllpglsv mnflsfllcv
      721 pvqmfggwhf yiqaykalkh ktanmdvliv latsiaflys fvillvamse rakvnpvtff
      781 dtppmlfvfi slgrwlehva kgktsealar lislqateat ivtlgpdnil lseeqvdvel
      841 vqrgdivkvv pggkfpvdgr vieghsmvde slitgeampv tkkpgntvia gsinqngsll
      901 isathvgadt tlsqivklve eaqtskapiq qfadklsgyf vpcivavsvv tlfawiiigf
      961 vdfeiiekyf lgynksisea eviirfafqa sitvlciacp cslglatpta vmvgtgvgaq
     1021 ngilikggep lemahkvkvv vfdktgtith gtpevmqvkf lvesnqlprn kmlaivgtae
     1081 snsehplgva itkyckkeld setlgtctdf qvvpgcgisc kvtnieally rknkmveenn
     1141 iknvtlvkie entnesvqpa liidaelptt ltsqkysvli gnrewmnrng llvknevdra
     1201 mmeherrgrt avlaavdgvl cgliaiadtv kpeaelavyt lksmglevvl mtgdnsktar
     1261 siasqvgitk vfaevlpshk vakvkqlqde gkrvamvgdg indspalama nvgiaigtgt
     1321 dvaieaadvv likddlmdvv asidlsrktv kririnfvfa liynligvpi aagvflpigl
     1381 vlqpwmgsaa maassvsvvv sslllkmyqk psseklrfqa cdpmrhksps eisvhigide
     1441 tgtgspklsl mdriinysra sinslfsdkr svnsivlnep dkhsllvgdf gedddtal
//
LOCUS       XP_053931419            1473 aa            linear   VRT 09-MAR-2023
DEFINITION  copper-transporting ATPase 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931419
VERSION     XP_053931419.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075444.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1473
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1473
                     /product="copper-transporting ATPase 1 isoform X2"
                     /calculated_mol_wt=159850
     Region          146..208
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(151..153,156)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          247..309
                     /region_name="CopZ"
                     /note="Copper chaperone CopZ [Inorganic ion transport and
                     metabolism]; COG2608"
                     /db_xref="CDD:442020"
     Region          354..417
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(360..362,365)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          466..528
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(471..473,476)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          541..601
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(547..549,552)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          626..1361
                     /region_name="P-type_ATPase_Cu-like"
                     /note="P-type heavy metal-transporting ATPase, similar to
                     human copper-transporting ATPases, ATP7A and ATP7B;
                     cd02094"
                     /db_xref="CDD:319783"
     Site            order(974,976,1338)
                     /site_type="other"
                     /note="putative Cu binding site [ion binding]"
                     /db_xref="CDD:319783"
     Site            order(1018..1020,1088,1155..1157,1187,1227..1229,1249,
                     1252,1255,1274,1277)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:319783"
     CDS             1..1473
                     /gene="ATP7A"
                     /coded_by="XM_054075444.1:16..4437"
                     /db_xref="GeneID:104058246"
ORIGIN      
        1 mqlywtsian nvsledknav viydsklqtp atlqeaiydm gfdatvpdpk aqpvlpdtif
       61 ltiptqsalt skqicntllq kkgivdvkms snqktavvtf ipsiingkqi tqmvpgvdls
      121 isapevtpgv nedsscsqas svvlrlkveg mtchsctsti egkiiklqgi qrikvsldnq
      181 eavvvyqphl itaeeikrqi eavgftatlk kqprplklga vdlerlrnaq tkgsemalke
      241 nsnvndtktv vfridgmhcn scvlniqsti salpsvrsvv vslekksaiv synpnlinrd
      301 vlrkaieavs petfkvslpd dcenvalfpt lmsplkssrp alkdasqplt qvvviniegm
      361 tcnscvqsie gvisqkagvk svhvslsnrn gtieydplqt cpedlrssie emgfdaslsa
      421 rtelpvaiaq pspevqlesh kteplskvsp ahlarqetkn iskcyvqvtg mtcascvani
      481 ernlrredgi hsilvalmag kaevrynpav ihpstiaeli relgfgatvm encgegdgil
      541 elvvrgmtca scvhkiestl mktngvlycs valatnkahv kydpevigpr dviqvikdlg
      601 fntslvkkdr sashldhkqe irqwkrsfvv slvfcipvmg lmiymmvmdh qladarahhn
      661 mtseemealh ssmvleyqll pglsvmnfls fllcvpvqmf ggwhfyiqay kalkhktanm
      721 dvlivlatsi aflysfvill vamserakvn pvtffdtppm lfvfislgrw lehvakgkts
      781 ealarlislq ateativtlg pdnillseeq vdvelvqrgd ivkvvpggkf pvdgrviegh
      841 smvdeslitg eampvtkkpg ntviagsinq ngsllisath vgadttlsqi vklveeaqts
      901 kapiqqfadk lsgyfvpciv avsvvtlfaw iiigfvdfei iekyflgynk siseaeviir
      961 fafqasitvl ciacpcslgl atptavmvgt gvgaqngili kggeplemah kvkvvvfdkt
     1021 gtithgtpev mqvkflvesn qlprnkmlai vgtaesnseh plgvaitkyc kkeldsetlg
     1081 tctdfqvvpg cgisckvtni eallyrknkm veenniknvt lvkieentne svqpaliida
     1141 elpttltsqk ysvlignrew mnrngllvkn evdrammehe rrgrtavlaa vdgvlcglia
     1201 iadtvkpeae lavytlksmg levvlmtgdn sktarsiasq vgitkvfaev lpshkvakvk
     1261 qlqdegkrva mvgdgindsp alamanvgia igtgtdvaie aadvvlikdd lmdvvasidl
     1321 srktvkriri nfvfaliynl igvpiaagvf lpiglvlqpw mgsaamaass vsvvvsslll
     1381 kmyqkpssek lrfqacdpmr hkspseisvh igidetgtgs pklslmdrii nysrasinsl
     1441 fsdkrsvnsi vlnepdkhsl lvgdfgeddd tal
//
LOCUS       XP_053931420            1434 aa            linear   VRT 09-MAR-2023
DEFINITION  copper-transporting ATPase 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931420
VERSION     XP_053931420.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075445.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1434
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1434
                     /product="copper-transporting ATPase 1 isoform X3"
                     /calculated_mol_wt=155421
     Region          107..169
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(112..114,117)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          208..270
                     /region_name="CopZ"
                     /note="Copper chaperone CopZ [Inorganic ion transport and
                     metabolism]; COG2608"
                     /db_xref="CDD:442020"
     Region          315..378
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(321..323,326)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          427..489
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(432..434,437)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          502..562
                     /region_name="HMA"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; cd00371"
                     /db_xref="CDD:238219"
     Site            order(508..510,513)
                     /site_type="metal-binding"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     Region          587..1322
                     /region_name="P-type_ATPase_Cu-like"
                     /note="P-type heavy metal-transporting ATPase, similar to
                     human copper-transporting ATPases, ATP7A and ATP7B;
                     cd02094"
                     /db_xref="CDD:319783"
     Site            order(935,937,1299)
                     /site_type="other"
                     /note="putative Cu binding site [ion binding]"
                     /db_xref="CDD:319783"
     Site            order(979..981,1049,1116..1118,1148,1188..1190,1210,1213,
                     1216,1235,1238)
                     /site_type="other"
                     /note="putative ATP binding site [chemical binding]"
                     /db_xref="CDD:319783"
     CDS             1..1434
                     /gene="ATP7A"
                     /coded_by="XM_054075445.1:200..4504"
                     /db_xref="GeneID:104058246"
ORIGIN      
        1 mgfdatvpdp kaqpvlpdti fltiptqsal tskqicntll qkkgivdvkm ssnqktavvt
       61 fipsiingkq itqmvpgvdl sisapevtpg vnedsscsqa ssvvlrlkve gmtchsctst
      121 iegkiiklqg iqrikvsldn qeavvvyqph litaeeikrq ieavgftatl kkqprplklg
      181 avdlerlrna qtkgsemalk ensnvndtkt vvfridgmhc nscvlniqst isalpsvrsv
      241 vvslekksai vsynpnlinr dvlrkaieav spetfkvslp ddcenvalfp tlmsplkssr
      301 palkdasqpl tqvvvinieg mtcnscvqsi egvisqkagv ksvhvslsnr ngtieydplq
      361 tcpedlrssi eemgfdasls artelpvaia qpspevqles hkteplskvs pahlarqetk
      421 niskcyvqvt gmtcascvan iernlrredg ihsilvalma gkaevrynpa vihpstiael
      481 irelgfgatv mencgegdgi lelvvrgmtc ascvhkiest lmktngvlyc svalatnkah
      541 vkydpevigp rdviqvikdl gfntslvkkd rsashldhkq eirqwkrsfv vslvfcipvm
      601 glmiymmvmd hqladarahh nmtseemeal hssmvleyql lpglsvmnfl sfllcvpvqm
      661 fggwhfyiqa ykalkhktan mdvlivlats iaflysfvil lvamserakv npvtffdtpp
      721 mlfvfislgr wlehvakgkt sealarlisl qateativtl gpdnillsee qvdvelvqrg
      781 divkvvpggk fpvdgrvieg hsmvdeslit geampvtkkp gntviagsin qngsllisat
      841 hvgadttlsq ivklveeaqt skapiqqfad klsgyfvpci vavsvvtlfa wiiigfvdfe
      901 iiekyflgyn ksiseaevii rfafqasitv lciacpcslg latptavmvg tgvgaqngil
      961 ikggeplema hkvkvvvfdk tgtithgtpe vmqvkflves nqlprnkmla ivgtaesnse
     1021 hplgvaitky ckkeldsetl gtctdfqvvp gcgisckvtn ieallyrknk mveenniknv
     1081 tlvkieentn esvqpaliid aelpttltsq kysvlignre wmnrngllvk nevdrammeh
     1141 errgrtavla avdgvlcgli aiadtvkpea elavytlksm glevvlmtgd nsktarsias
     1201 qvgitkvfae vlpshkvakv kqlqdegkrv amvgdginds palamanvgi aigtgtdvai
     1261 eaadvvlikd dlmdvvasid lsrktvkrir infvfaliyn ligvpiaagv flpiglvlqp
     1321 wmgsaamaas svsvvvssll lkmyqkpsse klrfqacdpm rhkspseisv higidetgtg
     1381 spklslmdri inysrasins lfsdkrsvns ivlnepdkhs llvgdfgedd dtal
//
LOCUS       XP_053931421             426 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853129 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931421
VERSION     XP_053931421.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075446.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..426
                     /product="uncharacterized protein LOC128853129 isoform X1"
                     /calculated_mol_wt=47488
     Region          33..106
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          38..42
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409430"
     Region          50..55
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409430"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409430"
     Region          141..215
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          144..148
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          158..162
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          181..185
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          195..200
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..426
                     /gene="LOC128853129"
                     /coded_by="XM_054075446.1:253..1533"
                     /db_xref="GeneID:128853129"
ORIGIN      
        1 mltqlraait gylllilqvs famleiterr ytaegssilm hapdiknisf iqweylspts
       61 salilqhyad sqsltiypay qgrvtfyqkn gsillqglee tdsgtykatv dlmqdkartt
      121 llkvikpvpq pelqctsnla gspielvclv pegvevfsis wkkdgrplpa ekcyllseni
      181 tvlwirngek sdcgtyscni snmiswkeat lnlmvtgltp plhhaqrlvi valmfttvsa
      241 isfiiqlfhr feearkpvil fahgflciss llllaasiiw mleegfsaaf illalfclvg
      301 vigstevaaa avrpaspryh kikiwhkvsq nstapttliv nllfttlllh nvqklhergc
      361 seavhltasc gfaavaifim llllllwyhr nkpkekttni trftwstqdt tspvleetrg
      421 qkqeee
//
LOCUS       XP_053931422             425 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853129 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931422
VERSION     XP_053931422.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075447.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..425
                     /product="uncharacterized protein LOC128853129 isoform X2"
                     /calculated_mol_wt=47359
     Region          33..106
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          38..42
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409430"
     Region          50..55
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409430"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409430"
     Region          141..215
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          144..148
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          158..162
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          181..185
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          195..200
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..425
                     /gene="LOC128853129"
                     /coded_by="XM_054075447.1:253..1530"
                     /db_xref="GeneID:128853129"
ORIGIN      
        1 mltqlraait gylllilqvs famleiterr ytaegssilm hapdiknisf iqweylspts
       61 salilqhyad sqsltiypay qgrvtfyqkn gsillqglee tdsgtykatv dlmqdkartt
      121 llkvikpvpq pelqctsnla gspielvclv pegvevfsis wkkdgrplpa ekcyllseni
      181 tvlwirngek sdcgtyscni snmiswkeat lnlmvtgltp plhhaqrlvi valmfttvsa
      241 isfiiqlfhr fearkpvilf ahgflcissl lllaasiiwm leegfsaafi llalfclvgv
      301 igstevaaaa vrpaspryhk ikiwhkvsqn stapttlivn llfttlllhn vqklhergcs
      361 eavhltascg faavaifiml lllllwyhrn kpkekttnit rftwstqdtt spvleetrgq
      421 kqeee
//
LOCUS       XP_053931423             411 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853129 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931423
VERSION     XP_053931423.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075448.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..411
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..411
                     /product="uncharacterized protein LOC128853129 isoform X3"
                     /calculated_mol_wt=45911
     Region          33..106
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          38..42
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409430"
     Region          50..55
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409430"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409430"
     Region          129..200
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          129..133
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          143..147
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          166..170
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          180..185
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..411
                     /gene="LOC128853129"
                     /coded_by="XM_054075448.1:253..1488"
                     /db_xref="GeneID:128853129"
ORIGIN      
        1 mltqlraait gylllilqvs famleiterr ytaegssilm hapdiknisf iqweylspts
       61 salilqhyad sqsltiypay qgrvtfyqkn gsillqglee tdsgtykatv dlmqdkartt
      121 llkvisspie lvclvpegve vfsiswkkdg rplpaekcyl lsenitvlwi rngeksdcgt
      181 yscnisnmis wkeatlnlmv tgltpplhha qrlvivalmf ttvsaisfii qlfhrfeear
      241 kpvilfahgf lcisslllla asiiwmleeg fsaafillal fclvgvigst evaaaavrpa
      301 spryhkikiw hkvsqnstap ttlivnllft tlllhnvqkl hergcseavh ltascgfaav
      361 aifimlllll lwyhrnkpke kttnitrftw stqdttspvl eetrgqkqee e
//
LOCUS       XP_053931424             404 aa            linear   VRT 09-MAR-2023
DEFINITION  SLAM family member 5-like isoform X4 [Cuculus canorus].
ACCESSION   XP_053931424
VERSION     XP_053931424.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075449.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..404
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..404
                     /product="SLAM family member 5-like isoform X4"
                     /calculated_mol_wt=45070
     Region          11..84
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          16..20
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409430"
     Region          28..33
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409430"
     Region          69..73
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409430"
     Region          119..193
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          122..126
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:143207"
     Region          136..140
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:143207"
     Region          159..163
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:143207"
     Region          173..178
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:143207"
     Region          186..189
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:143207"
     CDS             1..404
                     /gene="LOC128853129"
                     /coded_by="XM_054075449.1:182..1396"
                     /db_xref="GeneID:128853129"
ORIGIN      
        1 mleiterryt aegssilmha pdiknisfiq weylsptssa lilqhyadsq sltiypayqg
       61 rvtfyqkngs illqgleetd sgtykatvdl mqdkarttll kvikpvpqpe lqctsnlags
      121 pielvclvpe gvevfsiswk kdgrplpaek cyllsenitv lwirngeksd cgtyscnisn
      181 miswkeatln lmvtgltppl hhaqrlviva lmfttvsais fiiqlfhrfe earkpvilfa
      241 hgflcissll llaasiiwml eegfsaafil lalfclvgvi gstevaaaav rpaspryhki
      301 kiwhkvsqns tapttlivnl lfttlllhnv qklhergcse avhltascgf aavaifimll
      361 llllwyhrnk pkekttnitr ftwstqdtts pvleetrgqk qeee
//
LOCUS       XP_053931425             404 aa            linear   VRT 09-MAR-2023
DEFINITION  SLAM family member 5-like isoform X4 [Cuculus canorus].
ACCESSION   XP_053931425
VERSION     XP_053931425.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075450.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..404
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..404
                     /product="SLAM family member 5-like isoform X4"
                     /calculated_mol_wt=45070
     Region          11..84
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          16..20
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409430"
     Region          28..33
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409430"
     Region          69..73
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409430"
     Region          119..193
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          122..126
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:143207"
     Region          136..140
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:143207"
     Region          159..163
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:143207"
     Region          173..178
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:143207"
     Region          186..189
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:143207"
     CDS             1..404
                     /gene="LOC128853129"
                     /coded_by="XM_054075450.1:146..1360"
                     /db_xref="GeneID:128853129"
ORIGIN      
        1 mleiterryt aegssilmha pdiknisfiq weylsptssa lilqhyadsq sltiypayqg
       61 rvtfyqkngs illqgleetd sgtykatvdl mqdkarttll kvikpvpqpe lqctsnlags
      121 pielvclvpe gvevfsiswk kdgrplpaek cyllsenitv lwirngeksd cgtyscnisn
      181 miswkeatln lmvtgltppl hhaqrlviva lmfttvsais fiiqlfhrfe earkpvilfa
      241 hgflcissll llaasiiwml eegfsaafil lalfclvgvi gstevaaaav rpaspryhki
      301 kiwhkvsqns tapttlivnl lfttlllhnv qklhergcse avhltascgf aavaifimll
      361 llllwyhrnk pkekttnitr ftwstqdtts pvleetrgqk qeee
//
LOCUS       XP_053931426             386 aa            linear   VRT 09-MAR-2023
DEFINITION  hepatocyte cell adhesion molecule-like isoform X5 [Cuculus
            canorus].
ACCESSION   XP_053931426
VERSION     XP_053931426.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075451.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..386
                     /product="hepatocyte cell adhesion molecule-like isoform
                     X5"
                     /calculated_mol_wt=43217
     Region          33..106
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          38..42
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409430"
     Region          50..55
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409430"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409430"
     Region          141..215
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          144..148
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:143207"
     Region          158..162
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:143207"
     Region          181..185
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:143207"
     Region          195..200
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:143207"
     Region          208..211
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:143207"
     CDS             1..386
                     /gene="LOC128853129"
                     /coded_by="XM_054075451.1:252..1412"
                     /db_xref="GeneID:128853129"
ORIGIN      
        1 mltqlraait gylllilqvs famleiterr ytaegssilm hapdiknisf iqweylspts
       61 salilqhyad sqsltiypay qgrvtfyqkn gsillqglee tdsgtykatv dlmqdkartt
      121 llkvikpvpq pelqctsnla gspielvclv pegvevfsis wkkdgrplpa ekcyllseni
      181 tvlwirngek sdcgtyscni snmiswkeat lnlmvtgltp plhhaqrlvi valmfttvsa
      241 isfiiqlfhr feearkpvil fahgflciss llllaasiiw mleeghkvsq nstapttliv
      301 nllfttlllh nvqklhergc seavhltasc gfaavaifim llllllwyhr nkpkekttni
      361 trftwstqdt tspvleetrg qkqeee
//
LOCUS       XP_053931427             385 aa            linear   VRT 09-MAR-2023
DEFINITION  hepatocyte cell adhesion molecule-like isoform X6 [Cuculus
            canorus].
ACCESSION   XP_053931427
VERSION     XP_053931427.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075452.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..385
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..385
                     /product="hepatocyte cell adhesion molecule-like isoform
                     X6"
                     /calculated_mol_wt=43088
     Region          33..106
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          38..42
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409430"
     Region          50..55
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409430"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409430"
     Region          141..215
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          144..148
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:143207"
     Region          158..162
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:143207"
     Region          181..185
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:143207"
     Region          195..200
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:143207"
     Region          208..211
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:143207"
     CDS             1..385
                     /gene="LOC128853129"
                     /coded_by="XM_054075452.1:252..1409"
                     /db_xref="GeneID:128853129"
ORIGIN      
        1 mltqlraait gylllilqvs famleiterr ytaegssilm hapdiknisf iqweylspts
       61 salilqhyad sqsltiypay qgrvtfyqkn gsillqglee tdsgtykatv dlmqdkartt
      121 llkvikpvpq pelqctsnla gspielvclv pegvevfsis wkkdgrplpa ekcyllseni
      181 tvlwirngek sdcgtyscni snmiswkeat lnlmvtgltp plhhaqrlvi valmfttvsa
      241 isfiiqlfhr fearkpvilf ahgflcissl lllaasiiwm leeghkvsqn stapttlivn
      301 llfttlllhn vqklhergcs eavhltascg faavaifiml lllllwyhrn kpkekttnit
      361 rftwstqdtt spvleetrgq kqeee
//
LOCUS       XP_053931428             363 aa            linear   VRT 09-MAR-2023
DEFINITION  hepatocyte cell adhesion molecule-like isoform X7 [Cuculus
            canorus].
ACCESSION   XP_053931428
VERSION     XP_053931428.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075453.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..363
                     /product="hepatocyte cell adhesion molecule-like isoform
                     X7"
                     /calculated_mol_wt=40506
     Region          33..106
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          38..42
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409430"
     Region          50..55
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409430"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409430"
     Region          141..215
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          144..148
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409353"
     Region          158..162
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409353"
     Region          181..185
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409353"
     Region          195..200
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:409353"
     CDS             1..363
                     /gene="LOC128853129"
                     /coded_by="XM_054075453.1:253..1344"
                     /db_xref="GeneID:128853129"
ORIGIN      
        1 mltqlraait gylllilqvs famleiterr ytaegssilm hapdiknisf iqweylspts
       61 salilqhyad sqsltiypay qgrvtfyqkn gsillqglee tdsgtykatv dlmqdkartt
      121 llkvikpvpq pelqctsnla gspielvclv pegvevfsis wkkdgrplpa ekcyllseni
      181 tvlwirngek sdcgtyscni snmiswkeat lnlmvtgltp plhhaqrlvi valmfttvsa
      241 isfiiqlfhr feearkpvil fahgflciss llllaasiiw mleegfsaaf illalfclvg
      301 vigstevaaa avrpaspryh kikiyhrnkp kekttnitrf twstqdttsp vleetrgqkq
      361 eee
//
LOCUS       XP_053931429             353 aa            linear   VRT 09-MAR-2023
DEFINITION  hepatocyte cell adhesion molecule-like isoform X8 [Cuculus
            canorus].
ACCESSION   XP_053931429
VERSION     XP_053931429.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075454.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..353
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..353
                     /product="hepatocyte cell adhesion molecule-like isoform
                     X8"
                     /calculated_mol_wt=39521
     Region          33..106
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          38..42
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:409430"
     Region          50..55
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:409430"
     Region          91..95
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:409430"
     Region          141..215
                     /region_name="Ig"
                     /note="Immunoglobulin domain; cl11960"
                     /db_xref="CDD:472250"
     Region          144..148
                     /region_name="Ig strand B"
                     /note="Ig strand B [structural motif]"
                     /db_xref="CDD:143207"
     Region          158..162
                     /region_name="Ig strand C"
                     /note="Ig strand C [structural motif]"
                     /db_xref="CDD:143207"
     Region          181..185
                     /region_name="Ig strand E"
                     /note="Ig strand E [structural motif]"
                     /db_xref="CDD:143207"
     Region          195..200
                     /region_name="Ig strand F"
                     /note="Ig strand F [structural motif]"
                     /db_xref="CDD:143207"
     Region          208..211
                     /region_name="Ig strand G"
                     /note="Ig strand G [structural motif]"
                     /db_xref="CDD:143207"
     CDS             1..353
                     /gene="LOC128853129"
                     /coded_by="XM_054075454.1:252..1313"
                     /db_xref="GeneID:128853129"
ORIGIN      
        1 mltqlraait gylllilqvs famleiterr ytaegssilm hapdiknisf iqweylspts
       61 salilqhyad sqsltiypay qgrvtfyqkn gsillqglee tdsgtykatv dlmqdkartt
      121 llkvikpvpq pelqctsnla gspielvclv pegvevfsis wkkdgrplpa ekcyllseni
      181 tvlwirngek sdcgtyscni snmiswkeat lnlmvtgltp plhhaqrlvi valmfttvsa
      241 isfiiqlfhr fghkvsqnst apttlivnll fttlllhnvq klhergcsea vhltascgfa
      301 avaifimlll lllwyhrnkp kekttnitrf twstqdttsp vleetrgqkq eee
//
LOCUS       XP_009564574             305 aa            linear   VRT 09-MAR-2023
DEFINITION  centrosomal protein of 290 kDa [Cuculus canorus].
ACCESSION   XP_009564574
VERSION     XP_009564574.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566279.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="centrosomal protein of 290 kDa"
                     /calculated_mol_wt=35768
     Region          85..272
                     /region_name="DUF4515"
                     /note="Domain of unknown function (DUF4515); pfam14988"
                     /db_xref="CDD:405647"
     CDS             1..305
                     /gene="LOC104063992"
                     /coded_by="XM_009566279.2:2479..3396"
                     /db_xref="GeneID:104063992"
ORIGIN      
        1 masktkqmke dttrageeqq rartknedqs ketsdvevla qerksclqke skilnelmnt
       61 ymgraeslmq enkflekegn riqkesdayl syttkrsqkr enlvitlndq nhirlsqaqk
      121 ltsqcaakeg evrralkeme tkfylmneev edlrrligps tqlertkrie elekelqvtk
      181 iecadkmrei wseflrdkaa cemdcrqkiq vltqraeaaa kqclseqvke ikaenqhlrq
      241 elhrlieesk aleetkvrle eqqqqllren kyilnmacar yqlrlqqahs anskpssshr
      301 lehih
//
LOCUS       XP_053931430             305 aa            linear   VRT 09-MAR-2023
DEFINITION  centrosomal protein of 290 kDa [Cuculus canorus].
ACCESSION   XP_053931430
VERSION     XP_053931430.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075455.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="centrosomal protein of 290 kDa"
                     /calculated_mol_wt=35768
     Region          85..272
                     /region_name="DUF4515"
                     /note="Domain of unknown function (DUF4515); pfam14988"
                     /db_xref="CDD:405647"
     CDS             1..305
                     /gene="LOC104063992"
                     /coded_by="XM_054075455.1:697..1614"
                     /db_xref="GeneID:104063992"
ORIGIN      
        1 masktkqmke dttrageeqq rartknedqs ketsdvevla qerksclqke skilnelmnt
       61 ymgraeslmq enkflekegn riqkesdayl syttkrsqkr enlvitlndq nhirlsqaqk
      121 ltsqcaakeg evrralkeme tkfylmneev edlrrligps tqlertkrie elekelqvtk
      181 iecadkmrei wseflrdkaa cemdcrqkiq vltqraeaaa kqclseqvke ikaenqhlrq
      241 elhrlieesk aleetkvrle eqqqqllren kyilnmacar yqlrlqqahs anskpssshr
      301 lehih
//
LOCUS       XP_053931431             305 aa            linear   VRT 09-MAR-2023
DEFINITION  centrosomal protein of 290 kDa [Cuculus canorus].
ACCESSION   XP_053931431
VERSION     XP_053931431.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075456.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="centrosomal protein of 290 kDa"
                     /calculated_mol_wt=35768
     Region          85..272
                     /region_name="DUF4515"
                     /note="Domain of unknown function (DUF4515); pfam14988"
                     /db_xref="CDD:405647"
     CDS             1..305
                     /gene="LOC104063992"
                     /coded_by="XM_054075456.1:2325..3242"
                     /db_xref="GeneID:104063992"
ORIGIN      
        1 masktkqmke dttrageeqq rartknedqs ketsdvevla qerksclqke skilnelmnt
       61 ymgraeslmq enkflekegn riqkesdayl syttkrsqkr enlvitlndq nhirlsqaqk
      121 ltsqcaakeg evrralkeme tkfylmneev edlrrligps tqlertkrie elekelqvtk
      181 iecadkmrei wseflrdkaa cemdcrqkiq vltqraeaaa kqclseqvke ikaenqhlrq
      241 elhrlieesk aleetkvrle eqqqqllren kyilnmacar yqlrlqqahs anskpssshr
      301 lehih
//
LOCUS       XP_053931432             305 aa            linear   VRT 09-MAR-2023
DEFINITION  centrosomal protein of 290 kDa [Cuculus canorus].
ACCESSION   XP_053931432
VERSION     XP_053931432.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075457.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="centrosomal protein of 290 kDa"
                     /calculated_mol_wt=35768
     Region          85..272
                     /region_name="DUF4515"
                     /note="Domain of unknown function (DUF4515); pfam14988"
                     /db_xref="CDD:405647"
     CDS             1..305
                     /gene="LOC104063992"
                     /coded_by="XM_054075457.1:2400..3317"
                     /db_xref="GeneID:104063992"
ORIGIN      
        1 masktkqmke dttrageeqq rartknedqs ketsdvevla qerksclqke skilnelmnt
       61 ymgraeslmq enkflekegn riqkesdayl syttkrsqkr enlvitlndq nhirlsqaqk
      121 ltsqcaakeg evrralkeme tkfylmneev edlrrligps tqlertkrie elekelqvtk
      181 iecadkmrei wseflrdkaa cemdcrqkiq vltqraeaaa kqclseqvke ikaenqhlrq
      241 elhrlieesk aleetkvrle eqqqqllren kyilnmacar yqlrlqqahs anskpssshr
      301 lehih
//
LOCUS       XP_053931433             305 aa            linear   VRT 09-MAR-2023
DEFINITION  centrosomal protein of 290 kDa [Cuculus canorus].
ACCESSION   XP_053931433
VERSION     XP_053931433.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075458.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="centrosomal protein of 290 kDa"
                     /calculated_mol_wt=35768
     Region          85..272
                     /region_name="DUF4515"
                     /note="Domain of unknown function (DUF4515); pfam14988"
                     /db_xref="CDD:405647"
     CDS             1..305
                     /gene="LOC104063992"
                     /coded_by="XM_054075458.1:618..1535"
                     /db_xref="GeneID:104063992"
ORIGIN      
        1 masktkqmke dttrageeqq rartknedqs ketsdvevla qerksclqke skilnelmnt
       61 ymgraeslmq enkflekegn riqkesdayl syttkrsqkr enlvitlndq nhirlsqaqk
      121 ltsqcaakeg evrralkeme tkfylmneev edlrrligps tqlertkrie elekelqvtk
      181 iecadkmrei wseflrdkaa cemdcrqkiq vltqraeaaa kqclseqvke ikaenqhlrq
      241 elhrlieesk aleetkvrle eqqqqllren kyilnmacar yqlrlqqahs anskpssshr
      301 lehih
//
LOCUS       XP_053931434             305 aa            linear   VRT 09-MAR-2023
DEFINITION  centrosomal protein of 290 kDa [Cuculus canorus].
ACCESSION   XP_053931434
VERSION     XP_053931434.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075459.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="centrosomal protein of 290 kDa"
                     /calculated_mol_wt=35768
     Region          85..272
                     /region_name="DUF4515"
                     /note="Domain of unknown function (DUF4515); pfam14988"
                     /db_xref="CDD:405647"
     CDS             1..305
                     /gene="LOC104063992"
                     /coded_by="XM_054075459.1:339..1256"
                     /db_xref="GeneID:104063992"
ORIGIN      
        1 masktkqmke dttrageeqq rartknedqs ketsdvevla qerksclqke skilnelmnt
       61 ymgraeslmq enkflekegn riqkesdayl syttkrsqkr enlvitlndq nhirlsqaqk
      121 ltsqcaakeg evrralkeme tkfylmneev edlrrligps tqlertkrie elekelqvtk
      181 iecadkmrei wseflrdkaa cemdcrqkiq vltqraeaaa kqclseqvke ikaenqhlrq
      241 elhrlieesk aleetkvrle eqqqqllren kyilnmacar yqlrlqqahs anskpssshr
      301 lehih
//
LOCUS       XP_053931435             305 aa            linear   VRT 09-MAR-2023
DEFINITION  centrosomal protein of 290 kDa [Cuculus canorus].
ACCESSION   XP_053931435
VERSION     XP_053931435.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075460.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="centrosomal protein of 290 kDa"
                     /calculated_mol_wt=35768
     Region          85..272
                     /region_name="DUF4515"
                     /note="Domain of unknown function (DUF4515); pfam14988"
                     /db_xref="CDD:405647"
     CDS             1..305
                     /gene="LOC104063992"
                     /coded_by="XM_054075460.1:2118..3035"
                     /db_xref="GeneID:104063992"
ORIGIN      
        1 masktkqmke dttrageeqq rartknedqs ketsdvevla qerksclqke skilnelmnt
       61 ymgraeslmq enkflekegn riqkesdayl syttkrsqkr enlvitlndq nhirlsqaqk
      121 ltsqcaakeg evrralkeme tkfylmneev edlrrligps tqlertkrie elekelqvtk
      181 iecadkmrei wseflrdkaa cemdcrqkiq vltqraeaaa kqclseqvke ikaenqhlrq
      241 elhrlieesk aleetkvrle eqqqqllren kyilnmacar yqlrlqqahs anskpssshr
      301 lehih
//
LOCUS       XP_053931436             305 aa            linear   VRT 09-MAR-2023
DEFINITION  centrosomal protein of 290 kDa [Cuculus canorus].
ACCESSION   XP_053931436
VERSION     XP_053931436.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075461.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..305
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..305
                     /product="centrosomal protein of 290 kDa"
                     /calculated_mol_wt=35768
     Region          85..272
                     /region_name="DUF4515"
                     /note="Domain of unknown function (DUF4515); pfam14988"
                     /db_xref="CDD:405647"
     CDS             1..305
                     /gene="LOC104063992"
                     /coded_by="XM_054075461.1:271..1188"
                     /db_xref="GeneID:104063992"
ORIGIN      
        1 masktkqmke dttrageeqq rartknedqs ketsdvevla qerksclqke skilnelmnt
       61 ymgraeslmq enkflekegn riqkesdayl syttkrsqkr enlvitlndq nhirlsqaqk
      121 ltsqcaakeg evrralkeme tkfylmneev edlrrligps tqlertkrie elekelqvtk
      181 iecadkmrei wseflrdkaa cemdcrqkiq vltqraeaaa kqclseqvke ikaenqhlrq
      241 elhrlieesk aleetkvrle eqqqqllren kyilnmacar yqlrlqqahs anskpssshr
      301 lehih
//
LOCUS       XP_053931437             258 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853130 [Cuculus canorus].
ACCESSION   XP_053931437
VERSION     XP_053931437.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075462.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..258
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..258
                     /product="uncharacterized protein LOC128853130"
                     /calculated_mol_wt=28227
     Region          135..206
                     /region_name="Ig_3"
                     /note="Immunoglobulin domain; pfam13927"
                     /db_xref="CDD:464046"
     CDS             1..258
                     /gene="LOC128853130"
                     /coded_by="XM_054075462.1:11..787"
                     /db_xref="GeneID:128853130"
ORIGIN      
        1 mlpvllllfv lpspgspaaa rtlspcysan lspaserlvs avgctvlltv pplnatkavf
       61 weyktgsqeg viisyafnrp anasrsyenr tkfnetdfsl qmvlqrgddr lyrfrsgsda
      121 tgwfqlrvve plsepeivgn ssvnaggntk lvcnvlggka dlywwkknge lllgsnhvqf
      181 vdntttlcim kasmndsgyy acvvrnevsq netsfllhvq naanvvlpmi lacvfvglla
      241 gvfvwcrsrd rpcrngcw
//
LOCUS       XP_053931438             919 aa            linear   VRT 09-MAR-2023
DEFINITION  inositol polyphosphate 5-phosphatase OCRL isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053931438
VERSION     XP_053931438.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075463.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..919
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..919
                     /product="inositol polyphosphate 5-phosphatase OCRL
                     isoform X1"
                     /calculated_mol_wt=104933
     Region          34..134
                     /region_name="OCRL_clath_bd"
                     /note="Inositol polyphosphate 5-phosphatase clathrin
                     binding domain; pfam16726"
                     /db_xref="CDD:435540"
     Region          257..550
                     /region_name="INPP5c_INPP5B"
                     /note="Catalytic inositol polyphosphate 5-phosphatase
                     (INPP5c) domain of Type II inositol polyphosphate
                     5-phosphatase I, Oculocerebrorenal syndrome of Lowe 1, and
                     related proteins; cd09093"
                     /db_xref="CDD:197327"
     Site            order(265,267,295,298,300,303,365,371..372,392,395..396,
                     439,441,443,494..495,508,510,516,540..541)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:197327"
     Site            order(265,295,392,439,441,516,540..541)
                     /site_type="active"
                     /note="putative catalytic site [active]"
                     /db_xref="CDD:197327"
     Site            order(267,295,540)
                     /site_type="other"
                     /note="Mg binding site [ion binding]"
                     /db_xref="CDD:197327"
     Site            order(295,298,300,303,365,371..372,392,395..396,443,
                     494..495,508,510,540)
                     /site_type="other"
                     /note="putative PI/IP binding site [chemical binding]"
                     /db_xref="CDD:197327"
     Site            order(392,441,541)
                     /site_type="other"
                     /note="putative phosphate binding site [ion binding]"
                     /db_xref="CDD:197327"
     Region          685..914
                     /region_name="RhoGAP_OCRL1"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain present in OCRL1-like proteins.
                     OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins
                     contain two conserved domains: a central inositol
                     polyphosphate 5-phosphatase domain and...; cd04380"
                     /db_xref="CDD:239845"
     Site            order(775,810,814,877,880..881,907)
                     /site_type="other"
                     /note="putative GTPase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:239845"
     Site            775
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239845"
     CDS             1..919
                     /gene="OCRL"
                     /coded_by="XM_054075463.1:49..2808"
                     /db_xref="GeneID:104060514"
ORIGIN      
        1 meppgaacgl vvsagsgrqr aalplaaaqs vagaelragr repcvlslar rggrygivih
       61 sqekensdpd yipinsrfkc vqeaeetlli diatntgckv riqgdqtaer lfeipdeehc
      121 lgflsevqsi qeahlkaslp kkdsagwhqv eknlpglpqa sssgplefed dfnalsleek
      181 rnmqnhqigs rrepppppvp pnrqfhrere gtsrdqpkvt ntmrkmflps tqsgqregli
      241 khllakreka yvnlenfrff vgtwnvngqs pdsslepwlv cdteppdfyc igfqeldlst
      301 eaffyldsvk eqewlaavek slhpkakykk vqmvrlvgmm llifakkdql snirdimmes
      361 vgtgimgkmg nkggvavrfv fhnttfcivn shlaahvedf errnqdykdi carmsfvtpd
      421 dslpqlnimk hdvviwlgdl nyrlclpdas evksliskne lqklltydql niqrtqkkaf
      481 adftegeikf iptykydskt drwdssgkcr vpawcdrilw rggnvnqlry cshmdlktsd
      541 hkpvsalfri gvkvvdeqky rklfedivrl mdrmendflp slelsrrefe fenvkfrqlq
      601 kqkfqitnng qvtchfsfip klndihyckp wlraepcegy lepdestdis ldvyvskdsv
      661 tllnsgedsi edilvlhldr gkdyfltisg tylpscfgts lealcrmrrp irevpvtkli
      721 dlgedsflek eksvlqmcsl egeeasgmpl qvpkeiwllv dhlfkhachq edlfqtpgmq
      781 eeleqiidcl dtsipetipg snhsvaeall iflealpepv icyelyqrcl dwshssrlcr
      841 qvifqlprch rsvfrylmsf lrellkysed nnvtvamiaa lfsslilrpp pnlmakqtqq
      901 drqrainfly sfllagdde
//
LOCUS       XP_053931439             918 aa            linear   VRT 09-MAR-2023
DEFINITION  inositol polyphosphate 5-phosphatase OCRL isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053931439
VERSION     XP_053931439.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075464.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..918
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..918
                     /product="inositol polyphosphate 5-phosphatase OCRL
                     isoform X2"
                     /calculated_mol_wt=104861
     Region          34..133
                     /region_name="OCRL_clath_bd"
                     /note="Inositol polyphosphate 5-phosphatase clathrin
                     binding domain; pfam16726"
                     /db_xref="CDD:435540"
     Region          256..549
                     /region_name="INPP5c_INPP5B"
                     /note="Catalytic inositol polyphosphate 5-phosphatase
                     (INPP5c) domain of Type II inositol polyphosphate
                     5-phosphatase I, Oculocerebrorenal syndrome of Lowe 1, and
                     related proteins; cd09093"
                     /db_xref="CDD:197327"
     Site            order(264,266,294,297,299,302,364,370..371,391,394..395,
                     438,440,442,493..494,507,509,515,539..540)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:197327"
     Site            order(264,294,391,438,440,515,539..540)
                     /site_type="active"
                     /note="putative catalytic site [active]"
                     /db_xref="CDD:197327"
     Site            order(266,294,539)
                     /site_type="other"
                     /note="Mg binding site [ion binding]"
                     /db_xref="CDD:197327"
     Site            order(294,297,299,302,364,370..371,391,394..395,442,
                     493..494,507,509,539)
                     /site_type="other"
                     /note="putative PI/IP binding site [chemical binding]"
                     /db_xref="CDD:197327"
     Site            order(391,440,540)
                     /site_type="other"
                     /note="putative phosphate binding site [ion binding]"
                     /db_xref="CDD:197327"
     Region          684..913
                     /region_name="RhoGAP_OCRL1"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain present in OCRL1-like proteins.
                     OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins
                     contain two conserved domains: a central inositol
                     polyphosphate 5-phosphatase domain and...; cd04380"
                     /db_xref="CDD:239845"
     Site            order(774,809,813,876,879..880,906)
                     /site_type="other"
                     /note="putative GTPase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:239845"
     Site            774
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239845"
     CDS             1..918
                     /gene="OCRL"
                     /coded_by="XM_054075464.1:49..2805"
                     /db_xref="GeneID:104060514"
ORIGIN      
        1 meppgaacgl vvsagsgrqr aalplaaaqs vagaelragr repcvlslar rggrygivih
       61 sqekensdpd yipinsrfkc vqeaeetlli diatnsckvr iqgdqtaerl feipdeehcl
      121 gflsevqsiq eahlkaslpk kdsagwhqve knlpglpqas ssgplefedd fnalsleekr
      181 nmqnhqigsr repppppvpp nrqfhrereg tsrdqpkvtn tmrkmflpst qsgqreglik
      241 hllakrekay vnlenfrffv gtwnvngqsp dsslepwlvc dteppdfyci gfqeldlste
      301 affyldsvke qewlaaveks lhpkakykkv qmvrlvgmml lifakkdqls nirdimmesv
      361 gtgimgkmgn kggvavrfvf hnttfcivns hlaahvedfe rrnqdykdic armsfvtpdd
      421 slpqlnimkh dvviwlgdln yrlclpdase vkslisknel qklltydqln iqrtqkkafa
      481 dftegeikfi ptykydsktd rwdssgkcrv pawcdrilwr ggnvnqlryc shmdlktsdh
      541 kpvsalfrig vkvvdeqkyr klfedivrlm drmendflps lelsrrefef envkfrqlqk
      601 qkfqitnngq vtchfsfipk lndihyckpw lraepcegyl epdestdisl dvyvskdsvt
      661 llnsgedsie dilvlhldrg kdyfltisgt ylpscfgtsl ealcrmrrpi revpvtklid
      721 lgedsfleke ksvlqmcsle geeasgmplq vpkeiwllvd hlfkhachqe dlfqtpgmqe
      781 eleqiidcld tsipetipgs nhsvaealli flealpepvi cyelyqrcld wshssrlcrq
      841 vifqlprchr svfrylmsfl rellkysedn nvtvamiaal fsslilrppp nlmakqtqqd
      901 rqrainflys fllagdde
//
LOCUS       XP_053931440             911 aa            linear   VRT 09-MAR-2023
DEFINITION  inositol polyphosphate 5-phosphatase OCRL isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053931440
VERSION     XP_053931440.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075465.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..911
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..911
                     /product="inositol polyphosphate 5-phosphatase OCRL
                     isoform X3"
                     /calculated_mol_wt=104027
     Region          34..134
                     /region_name="OCRL_clath_bd"
                     /note="Inositol polyphosphate 5-phosphatase clathrin
                     binding domain; pfam16726"
                     /db_xref="CDD:435540"
     Region          257..550
                     /region_name="INPP5c_INPP5B"
                     /note="Catalytic inositol polyphosphate 5-phosphatase
                     (INPP5c) domain of Type II inositol polyphosphate
                     5-phosphatase I, Oculocerebrorenal syndrome of Lowe 1, and
                     related proteins; cd09093"
                     /db_xref="CDD:197327"
     Site            order(265,267,295,298,300,303,365,371..372,392,395..396,
                     439,441,443,494..495,508,510,516,540..541)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:197327"
     Site            order(265,295,392,439,441,516,540..541)
                     /site_type="active"
                     /note="putative catalytic site [active]"
                     /db_xref="CDD:197327"
     Site            order(267,295,540)
                     /site_type="other"
                     /note="Mg binding site [ion binding]"
                     /db_xref="CDD:197327"
     Site            order(295,298,300,303,365,371..372,392,395..396,443,
                     494..495,508,510,540)
                     /site_type="other"
                     /note="putative PI/IP binding site [chemical binding]"
                     /db_xref="CDD:197327"
     Site            order(392,441,541)
                     /site_type="other"
                     /note="putative phosphate binding site [ion binding]"
                     /db_xref="CDD:197327"
     Region          685..906
                     /region_name="RhoGAP_OCRL1"
                     /note="RhoGAP (GTPase-activator protein [GAP] for Rho-like
                     small GTPases) domain present in OCRL1-like proteins.
                     OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins
                     contain two conserved domains: a central inositol
                     polyphosphate 5-phosphatase domain and...; cd04380"
                     /db_xref="CDD:239845"
     Site            order(767,802,806,869,872..873,899)
                     /site_type="other"
                     /note="putative GTPase interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:239845"
     Site            767
                     /site_type="active"
                     /note="catalytic residue [active]"
                     /db_xref="CDD:239845"
     CDS             1..911
                     /gene="OCRL"
                     /coded_by="XM_054075465.1:49..2784"
                     /db_xref="GeneID:104060514"
ORIGIN      
        1 meppgaacgl vvsagsgrqr aalplaaaqs vagaelragr repcvlslar rggrygivih
       61 sqekensdpd yipinsrfkc vqeaeetlli diatntgckv riqgdqtaer lfeipdeehc
      121 lgflsevqsi qeahlkaslp kkdsagwhqv eknlpglpqa sssgplefed dfnalsleek
      181 rnmqnhqigs rrepppppvp pnrqfhrere gtsrdqpkvt ntmrkmflps tqsgqregli
      241 khllakreka yvnlenfrff vgtwnvngqs pdsslepwlv cdteppdfyc igfqeldlst
      301 eaffyldsvk eqewlaavek slhpkakykk vqmvrlvgmm llifakkdql snirdimmes
      361 vgtgimgkmg nkggvavrfv fhnttfcivn shlaahvedf errnqdykdi carmsfvtpd
      421 dslpqlnimk hdvviwlgdl nyrlclpdas evksliskne lqklltydql niqrtqkkaf
      481 adftegeikf iptykydskt drwdssgkcr vpawcdrilw rggnvnqlry cshmdlktsd
      541 hkpvsalfri gvkvvdeqky rklfedivrl mdrmendflp slelsrrefe fenvkfrqlq
      601 kqkfqitnng qvtchfsfip klndihyckp wlraepcegy lepdestdis ldvyvskdsv
      661 tllnsgedsi edilvlhldr gkdyfltisg tylpscfgts lealcrmrrp irevpvtkli
      721 dleksvlqmc slegeeasgm plqvpkeiwl lvdhlfkhac hqedlfqtpg mqeeleqiid
      781 cldtsipeti pgsnhsvaea lliflealpe pvicyelyqr cldwshssrl crqvifqlpr
      841 chrsvfrylm sflrellkys ednnvtvami aalfsslilr pppnlmakqt qqdrqrainf
      901 lysfllagdd e
//
LOCUS       XP_053931441              76 aa            linear   VRT 09-MAR-2023
DEFINITION  apelin [Cuculus canorus].
ACCESSION   XP_053931441
VERSION     XP_053931441.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075466.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..76
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..76
                     /product="apelin"
                     /calculated_mol_wt=8273
     Region          22..76
                     /region_name="Apelin"
                     /note="APJ endogenous ligand; pfam15360"
                     /db_xref="CDD:464670"
     CDS             1..76
                     /gene="APLN"
                     /coded_by="XM_054075466.1:57..287"
                     /db_xref="GeneID:104060513"
ORIGIN      
        1 maaprwllal llllclalss agplcqapdq kdaedglirt lvrprgarrg agqrpggwrr
       61 vrrprprlsh kgpmpf
//
LOCUS       XP_009553554             744 aa            linear   VRT 09-MAR-2023
DEFINITION  ribosomal protein S6 kinase alpha-6 isoform X1 [Cuculus canorus].
ACCESSION   XP_009553554
VERSION     XP_009553554.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009555259.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009553554.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..744
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..744
                     /product="ribosomal protein S6 kinase alpha-6 isoform X1"
                     /calculated_mol_wt=83796
     Region          75..391
                     /region_name="STKc_RSK_N"
                     /note="N-terminal catalytic domain of the Serine/Threonine
                     Kinase, 90 kDa ribosomal protein S6 kinase; cd05582"
                     /db_xref="CDD:270734"
     Site            order(77..81,85,101,103,134,150..151,153,157,159,196,198,
                     200..201,203,213..214,217,231..236,263,269,272)
                     /site_type="active"
                     /db_xref="CDD:270734"
     Site            order(77..81,85,101,103,134,151..153,157,196,198,200..201,
                     203,213..214)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270734"
     Site            order(81,157,159,196,198,200,217,231..236,263,269,272)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270734"
     Site            order(213..224,226..236)
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270734"
     Site            372
                     /site_type="other"
                     /note="turn motif phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:270734"
     Site            385..390
                     /site_type="other"
                     /note="hydrophobic motif (HM)"
                     /db_xref="CDD:270734"
     Region          420..714
                     /region_name="STKc_RSK4_C"
                     /note="C-terminal catalytic domain of the Serine/Threonine
                     Kinase, Ribosomal S6 kinase 4 (also called Ribosomal
                     protein S6 kinase alpha-6 or 90kDa ribosomal protein S6
                     kinase 6); cd14177"
                     /db_xref="CDD:271079"
     Site            order(431..435,439,452,454,480,496..499,503,505,541..542,
                     544,546..547,549,563..564,567,582..586,588)
                     /site_type="active"
                     /db_xref="CDD:271079"
     Site            order(431..434,439,452,454,480,496..499,503,546..547,549,
                     563..564)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:271079"
     Site            order(435,503,505,541..542,544,546,567,582..586,588)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:271079"
     Site            563..586
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:271079"
     CDS             1..744
                     /gene="RPS6KA6"
                     /coded_by="XM_009555259.2:109..2343"
                     /db_xref="GeneID:104054283"
ORIGIN      
        1 mvpfatldgd pepcrkmely vsggelnglk madepmeege pysyhdegsv keipithhvk
       61 egcekadpaq fellkvlgqg sfgkvflvrk iigpdagqly amkvlkkasl kvrdrvrtkm
      121 erdilvevnh pfivklhyaf qtegklylil dflrggdvft rlskevmfte edvkfylael
      181 alaldhlhsl givyrdlkpe nilldeaghi kltdfglske svdqekkays fcgtveymap
      241 evvnrrghnq sadwwsfgvl mfemltgtlp fqgkdrnetm nmilkaklgm pqflspeaqs
      301 llrmlfkrnp snrlgagsdg veeikrhpff stvdwnklfr reiqppfkpa sgkpedtfcf
      361 dpeftaktpk dspgvppsan ahqlfkgfsf vatttvedhk ispltnilpi vqqlhgnsaq
      421 ftdvyelked igvgsysvck rcihiatnme favkiidksk rdpseeieil mrygqhpnii
      481 tlkdvyddgr fiylvtelmk ggelldrilr qkffsereas avlytitktv dylhcqgvvh
      541 rdlkpsnily mddsnnadsi ricdfgfakq lrgenglllt pcytanfvap evlmrqgyda
      601 acdiwslgvl lytmlagytp fangpndtpe eilvrigsgk fslsggnwdt vsdaakdlls
      661 hmlhvdphqr ytaeqvlkhs wiacrdqlph yqlnrqdaph lvkgamaaty salnhktfqp
      721 vlepvaassl aqrrsmkklt stdl
//
LOCUS       XP_053931442             743 aa            linear   VRT 09-MAR-2023
DEFINITION  ribosomal protein S6 kinase alpha-6 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931442
VERSION     XP_053931442.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075467.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..743
                     /product="ribosomal protein S6 kinase alpha-6 isoform X2"
                     /calculated_mol_wt=83667
     Region          75..391
                     /region_name="STKc_RSK_N"
                     /note="N-terminal catalytic domain of the Serine/Threonine
                     Kinase, 90 kDa ribosomal protein S6 kinase; cd05582"
                     /db_xref="CDD:270734"
     Site            order(77..81,85,101,103,134,150..151,153,157,159,196,198,
                     200..201,203,213..214,217,231..236,263,269,272)
                     /site_type="active"
                     /db_xref="CDD:270734"
     Site            order(77..81,85,101,103,134,151..153,157,196,198,200..201,
                     203,213..214)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270734"
     Site            order(81,157,159,196,198,200,217,231..236,263,269,272)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270734"
     Site            order(213..224,226..236)
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270734"
     Site            372
                     /site_type="other"
                     /note="turn motif phosphorylation site [posttranslational
                     modification]"
                     /db_xref="CDD:270734"
     Site            385..390
                     /site_type="other"
                     /note="hydrophobic motif (HM)"
                     /db_xref="CDD:270734"
     Region          419..713
                     /region_name="STKc_RSK4_C"
                     /note="C-terminal catalytic domain of the Serine/Threonine
                     Kinase, Ribosomal S6 kinase 4 (also called Ribosomal
                     protein S6 kinase alpha-6 or 90kDa ribosomal protein S6
                     kinase 6); cd14177"
                     /db_xref="CDD:271079"
     Site            order(430..434,438,451,453,479,495..498,502,504,540..541,
                     543,545..546,548,562..563,566,581..585,587)
                     /site_type="active"
                     /db_xref="CDD:271079"
     Site            order(430..433,438,451,453,479,495..498,502,545..546,548,
                     562..563)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:271079"
     Site            order(434,502,504,540..541,543,545,566,581..585,587)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:271079"
     Site            562..585
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:271079"
     CDS             1..743
                     /gene="RPS6KA6"
                     /coded_by="XM_054075467.1:109..2340"
                     /db_xref="GeneID:104054283"
ORIGIN      
        1 mvpfatldgd pepcrkmely vsggelnglk madepmeege pysyhdegsv keipithhvk
       61 egcekadpaq fellkvlgqg sfgkvflvrk iigpdagqly amkvlkkasl kvrdrvrtkm
      121 erdilvevnh pfivklhyaf qtegklylil dflrggdvft rlskevmfte edvkfylael
      181 alaldhlhsl givyrdlkpe nilldeaghi kltdfglske svdqekkays fcgtveymap
      241 evvnrrghnq sadwwsfgvl mfemltgtlp fqgkdrnetm nmilkaklgm pqflspeaqs
      301 llrmlfkrnp snrlgagsdg veeikrhpff stvdwnklfr reiqppfkpa sgkpedtfcf
      361 dpeftaktpk dspgvppsan ahqlfkgfsf vatttvedhk ispltnilpi vqlhgnsaqf
      421 tdvyelkedi gvgsysvckr cihiatnmef avkiidkskr dpseeieilm rygqhpniit
      481 lkdvyddgrf iylvtelmkg gelldrilrq kffsereasa vlytitktvd ylhcqgvvhr
      541 dlkpsnilym ddsnnadsir icdfgfakql rgengllltp cytanfvape vlmrqgydaa
      601 cdiwslgvll ytmlagytpf angpndtpee ilvrigsgkf slsggnwdtv sdaakdllsh
      661 mlhvdphqry taeqvlkhsw iacrdqlphy qlnrqdaphl vkgamaatys alnhktfqpv
      721 lepvaassla qrrsmkklts tdl
//
LOCUS       XP_053931443             284 aa            linear   VRT 09-MAR-2023
DEFINITION  P2R1A-PPP2R2A-interacting phosphatase regulator 1 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931443
VERSION     XP_053931443.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075468.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..284
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..284
                     /product="P2R1A-PPP2R2A-interacting phosphatase regulator
                     1 isoform X1"
                     /calculated_mol_wt=30584
     CDS             1..284
                     /gene="LOC104060672"
                     /coded_by="XM_054075468.1:144..998"
                     /db_xref="GeneID:104060672"
ORIGIN      
        1 maqekmeldl elpaasatap gdggglrrsn saplihglsd nsqvfqanvl rtrrnsttvm
       61 nrhslfvpss piripssrlh qikqeegmnl mnretvrere vqvamqmshs weeslslsdn
      121 dfekssspkq vdfvpvspap sptrgigkqc fspslqslvs ssglppspsp sptrrfssrr
      181 sqspincirp svlgsikrkg vteiedhpkr lfqgstnmlt lelshqadlg gclsshaldd
      241 nrssagsscd spaevgtntd spvtlsdsrs sflpvdltak lpin
//
LOCUS       XP_053931444             283 aa            linear   VRT 09-MAR-2023
DEFINITION  P2R1A-PPP2R2A-interacting phosphatase regulator 1 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053931444
VERSION     XP_053931444.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075469.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..283
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..283
                     /product="P2R1A-PPP2R2A-interacting phosphatase regulator
                     1 isoform X2"
                     /calculated_mol_wt=30497
     CDS             1..283
                     /gene="LOC104060672"
                     /coded_by="XM_054075469.1:142..993"
                     /db_xref="GeneID:104060672"
ORIGIN      
        1 maqekmeldl elpaasatap gdggglrrsn saplihglsd nsqvfqanvl rtrrnsttvm
       61 nrhslfvpss piripssrlh qikqeegmnl mnretvrere vqvamqmshs weeslslsdn
      121 dfekssspkq vdfvpvspap sptrgigkqc fspslqslvs ssglppspsp sptrrfsrrs
      181 qspincirps vlgsikrkgv teiedhpkrl fqgstnmltl elshqadlgg clsshalddn
      241 rssagsscds paevgtntds pvtlsdsrss flpvdltakl pin
//
LOCUS       XP_053931445             267 aa            linear   VRT 09-MAR-2023
DEFINITION  P2R1A-PPP2R2A-interacting phosphatase regulator 1 isoform X3
            [Cuculus canorus].
ACCESSION   XP_053931445
VERSION     XP_053931445.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075470.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..267
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..267
                     /product="P2R1A-PPP2R2A-interacting phosphatase regulator
                     1 isoform X3"
                     /calculated_mol_wt=29277
     CDS             1..267
                     /gene="LOC104060672"
                     /coded_by="XM_054075470.1:139..942"
                     /db_xref="GeneID:104060672"
ORIGIN      
        1 mcqtpkfllf yllskcqlfd lcdnsqvfqa nvlrtrrnst tvmnrhslfv psspiripss
       61 rlhqikqeeg mnlmnretvr erevqvamqm shsweeslsl sdndfeksss pkqvdfvpvs
      121 papsptrgig kqcfspslqs lvsssglpps pspsptrrfs srrsqspinc irpsvlgsik
      181 rkgvteiedh pkrlfqgstn mltlelshqa dlggclssha lddnrssags scdspaevgt
      241 ntdspvtlsd srssflpvdl taklpin
//
LOCUS       XP_053931446             675 aa            linear   VRT 09-MAR-2023
DEFINITION  myotubularin-related protein 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931446
VERSION     XP_053931446.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075471.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..675
                     /product="myotubularin-related protein 1 isoform X1"
                     /calculated_mol_wt=76241
     Region          117..216
                     /region_name="PH-GRAM_MTMR1"
                     /note="Myotubularian related 1 protein (MTMR1) Pleckstrin
                     Homology-Glucosyltransferases, Rab-like GTPase activators
                     and Myotubularins (PH-GRAM) domain; cd13358"
                     /db_xref="CDD:270165"
     Region          235..559
                     /region_name="Myotub-related"
                     /note="Myotubularin-like phosphatase domain; pfam06602"
                     /db_xref="CDD:461958"
     CDS             1..675
                     /gene="MTMR1"
                     /coded_by="XM_054075471.1:59..2086"
                     /db_xref="GeneID:104062991"
ORIGIN      
        1 meraaaapal aegggrragr aaagrqpste tldsptgshv ewckqliaat issqisgsvp
       61 segvsrdyrv yrrpvireiq dghngyhsea etdqalrdgn kvaqmeeapl fpgesikvia
      121 kdvmyicpfm gavsgtltvt dfrmyiksve rdppfvvdvp lgvisrveki gvqshgdnsc
      181 gieivckdmr nlrlaykqee qnrleifenl virafpvsng lplfafsyke kfavngwkvy
      241 dpmaeykrqg lpneswkisk inntyelcdt ypavlvvpss vkdddlskva afrakgrvpv
      301 lswihpesqa titrcsqpsv gpndkrcked ekylqtimda naqshkliif darqnsvadt
      361 nkakgggyes esaypnaelv fleihnihvm reslrklkei vypsidetrw lsnvdsthwl
      421 eyirmllaga vriadkiesg ktsvvvhcsd gwdrtaqlta lamlmldsyy rtikgfevli
      481 ekewisfghr famrvghgdd dhadadrspi flqfidcvwq mtkqfpaafe fnelflitil
      541 dhlysclfgt flcncekerl keevstktvs lwsyinsqld eftnpfyvny enhvlypvas
      601 lnhlelwvny yvrwnprmrp qvpihqnlke llairtelqk kvedlqreaa trsissssdr
      661 gsspshsatp vhtsv
//
LOCUS       XP_053931447             667 aa            linear   VRT 09-MAR-2023
DEFINITION  myotubularin-related protein 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931447
VERSION     XP_053931447.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075472.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..667
                     /product="myotubularin-related protein 1 isoform X2"
                     /calculated_mol_wt=75201
     Region          109..208
                     /region_name="PH-GRAM_MTMR1"
                     /note="Myotubularian related 1 protein (MTMR1) Pleckstrin
                     Homology-Glucosyltransferases, Rab-like GTPase activators
                     and Myotubularins (PH-GRAM) domain; cd13358"
                     /db_xref="CDD:270165"
     Region          227..551
                     /region_name="Myotub-related"
                     /note="Myotubularin-like phosphatase domain; pfam06602"
                     /db_xref="CDD:461958"
     CDS             1..667
                     /gene="MTMR1"
                     /coded_by="XM_054075472.1:59..2062"
                     /db_xref="GeneID:104062991"
ORIGIN      
        1 meraaaapal aegggrragr aaagrqpste tldsptgshv ewckqliaat issqisgsvp
       61 segvsrdyre iqdghngyhs eaetdqalrd gnkvaqmeea plfpgesikv iakdvmyicp
      121 fmgavsgtlt vtdfrmyiks verdppfvvd vplgvisrve kigvqshgdn scgieivckd
      181 mrnlrlaykq eeqnrleife nlvirafpvs nglplfafsy kekfavngwk vydpmaeykr
      241 qglpneswki skinntyelc dtypavlvvp ssvkdddlsk vaafrakgrv pvlswihpes
      301 qatitrcsqp svgpndkrck edekylqtim danaqshkli ifdarqnsva dtnkakgggy
      361 esesaypnae lvfleihnih vmreslrklk eivypsidet rwlsnvdsth wleyirmlla
      421 gavriadkie sgktsvvvhc sdgwdrtaql talamlmlds yyrtikgfev liekewisfg
      481 hrfamrvghg dddhadadrs piflqfidcv wqmtkqfpaa fefnelflit ildhlysclf
      541 gtflcnceke rlkeevstkt vslwsyinsq ldeftnpfyv nyenhvlypv aslnhlelwv
      601 nyyvrwnprm rpqvpihqnl kellairtel qkkvedlqre aatrsissss drgsspshsa
      661 tpvhtsv
//
LOCUS       XP_053931448             658 aa            linear   VRT 09-MAR-2023
DEFINITION  myotubularin-related protein 1 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931448
VERSION     XP_053931448.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075473.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..658
                     /product="myotubularin-related protein 1 isoform X3"
                     /calculated_mol_wt=74329
     Region          100..199
                     /region_name="PH-GRAM_MTMR1"
                     /note="Myotubularian related 1 protein (MTMR1) Pleckstrin
                     Homology-Glucosyltransferases, Rab-like GTPase activators
                     and Myotubularins (PH-GRAM) domain; cd13358"
                     /db_xref="CDD:270165"
     Region          218..542
                     /region_name="Myotub-related"
                     /note="Myotubularin-like phosphatase domain; pfam06602"
                     /db_xref="CDD:461958"
     CDS             1..658
                     /gene="MTMR1"
                     /coded_by="XM_054075473.1:59..2035"
                     /db_xref="GeneID:104062991"
ORIGIN      
        1 meraaaapal aegggrragr aaagrqpste tldsptgshv ewckqliaat issqisgsvp
       61 segvsrdyrv yrrpviralr dgnkvaqmee aplfpgesik viakdvmyic pfmgavsgtl
      121 tvtdfrmyik sverdppfvv dvplgvisrv ekigvqshgd nscgieivck dmrnlrlayk
      181 qeeqnrleif enlvirafpv snglplfafs ykekfavngw kvydpmaeyk rqglpneswk
      241 iskinntyel cdtypavlvv pssvkdddls kvaafrakgr vpvlswihpe sqatitrcsq
      301 psvgpndkrc kedekylqti mdanaqshkl iifdarqnsv adtnkakggg yesesaypna
      361 elvfleihni hvmreslrkl keivypside trwlsnvdst hwleyirmll agavriadki
      421 esgktsvvvh csdgwdrtaq ltalamlmld syyrtikgfe vliekewisf ghrfamrvgh
      481 gdddhadadr spiflqfidc vwqmtkqfpa afefnelfli tildhlyscl fgtflcncek
      541 erlkeevstk tvslwsyins qldeftnpfy vnyenhvlyp vaslnhlelw vnyyvrwnpr
      601 mrpqvpihqn lkellairte lqkkvedlqr eaatrsisss sdrgsspshs atpvhtsv
//
LOCUS       XP_053931449             650 aa            linear   VRT 09-MAR-2023
DEFINITION  myotubularin-related protein 1 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931449
VERSION     XP_053931449.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075474.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..650
                     /product="myotubularin-related protein 1 isoform X4"
                     /calculated_mol_wt=73289
     Region          92..191
                     /region_name="PH-GRAM_MTMR1"
                     /note="Myotubularian related 1 protein (MTMR1) Pleckstrin
                     Homology-Glucosyltransferases, Rab-like GTPase activators
                     and Myotubularins (PH-GRAM) domain; cd13358"
                     /db_xref="CDD:270165"
     Region          210..534
                     /region_name="Myotub-related"
                     /note="Myotubularin-like phosphatase domain; pfam06602"
                     /db_xref="CDD:461958"
     CDS             1..650
                     /gene="MTMR1"
                     /coded_by="XM_054075474.1:59..2011"
                     /db_xref="GeneID:104062991"
ORIGIN      
        1 meraaaapal aegggrragr aaagrqpste tldsptgshv ewckqliaat issqisgsvp
       61 segvsrdyra lrdgnkvaqm eeaplfpges ikviakdvmy icpfmgavsg tltvtdfrmy
      121 iksverdppf vvdvplgvis rvekigvqsh gdnscgieiv ckdmrnlrla ykqeeqnrle
      181 ifenlviraf pvsnglplfa fsykekfavn gwkvydpmae ykrqglpnes wkiskinnty
      241 elcdtypavl vvpssvkddd lskvaafrak grvpvlswih pesqatitrc sqpsvgpndk
      301 rckedekylq timdanaqsh kliifdarqn svadtnkakg ggyesesayp naelvfleih
      361 nihvmreslr klkeivypsi detrwlsnvd sthwleyirm llagavriad kiesgktsvv
      421 vhcsdgwdrt aqltalamlm ldsyyrtikg fevliekewi sfghrfamrv ghgdddhada
      481 drspiflqfi dcvwqmtkqf paafefnelf litildhlys clfgtflcnc ekerlkeevs
      541 tktvslwsyi nsqldeftnp fyvnyenhvl ypvaslnhle lwvnyyvrwn prmrpqvpih
      601 qnlkellair telqkkvedl qreaatrsis sssdrgssps hsatpvhtsv
//
LOCUS       XP_053931450             218 aa            linear   VRT 09-MAR-2023
DEFINITION  hypoxanthine-guanine phosphoribosyltransferase [Cuculus canorus].
ACCESSION   XP_053931450
VERSION     XP_053931450.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075475.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..218
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..218
                     /product="hypoxanthine-guanine phosphoribosyltransferase"
                     /calculated_mol_wt=24437
     Region          4..218
                     /region_name="PRTases_typeI"
                     /note="Phosphoribosyl transferase (PRT)-type I domain;
                     cl00309"
                     /db_xref="CDD:444823"
     Site            order(68,70,134..136,138..142,166)
                     /site_type="active"
                     /db_xref="CDD:206754"
     CDS             1..218
                     /gene="HPRT1"
                     /coded_by="XM_054075475.1:102..758"
                     /db_xref="GeneID:104060684"
ORIGIN      
        1 matpspcivi gddeqgydld lfcipkhyad dlekvyiphg limdrterla reimkgmggh
       61 hivalcvlkg gykffadlld yikalnrnsd ksipmtvdfi rlksycndqs tgdikviggd
      121 dlstltgknv livediidtg ktmktllsll kqynpkmvkv asllvkrtpr svgyrpdfvg
      181 fevpdkfvvg yaldyneyfr dlnhicvise tgkqkyka
//
LOCUS       XP_053931451             470 aa            linear   VRT 09-MAR-2023
DEFINITION  Krueppel-like factor 5 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931451
VERSION     XP_053931451.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075476.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..470
                     /product="Krueppel-like factor 5 isoform X1"
                     /calculated_mol_wt=51557
     Region          2..364
                     /region_name="KLF5_N"
                     /note="N-terminal domain of Kruppel-like factor 5;
                     cd21579"
                     /db_xref="CDD:410335"
     Region          369..391
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..470
                     /gene="LOC104066240"
                     /coded_by="XM_054075476.1:5436..6848"
                     /db_xref="GeneID:104066240"
ORIGIN      
        1 mssglllptp lpedataftp lkpiimsgqp nedtpvfedi kppvrpldnp pdlaqlhpmr
       61 meqrmpplil earsemdkyl snevlpipmi pdkkyrresa svvdeffste kpastpysvn
      121 invilqdtth lrtglyrppk pvapfpqikt epgtsfaqpc sstsgstqtl pdftsvfsmp
      181 qsvavnnifi kqempseipl stnpqpsqly qmplgnasgd ittltftsns ttainslsgv
      241 tmstghtmss mvhrpvhpgg svkqyphvsh gqgnfnisgq fytvpgvnlp psppnsqpgs
      301 penqpelint ispppsyeat fglklvqssq vppvpnglgt lsqghvvmqp pkynrrnnpe
      361 lekrrihhcd ypgcskvytk sshlkahqrt htgvysdles kllahfshpf sipkgscrea
      421 vvqgraaall apphhhlspk itlweggfyr slvhlqkpnd ifkvcsefhf
//
LOCUS       XP_053931452             454 aa            linear   VRT 09-MAR-2023
DEFINITION  Krueppel-like factor 5 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931452
VERSION     XP_053931452.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075477.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..454
                     /product="Krueppel-like factor 5 isoform X2"
                     /calculated_mol_wt=49583
     Region          2..348
                     /region_name="KLF5_N"
                     /note="N-terminal domain of Kruppel-like factor 5;
                     cd21579"
                     /db_xref="CDD:410335"
     Region          353..375
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..454
                     /gene="LOC104066240"
                     /coded_by="XM_054075477.1:5435..6799"
                     /db_xref="GeneID:104066240"
ORIGIN      
        1 mssglllptp lpedataftp lkpiimsgqp nedtpvfedi kppvrpldnp pdlaqarsem
       61 dkylsnevlp ipmipdkkyr resasvvdef fstekpastp ysvninvilq dtthlrtgly
      121 rppkpvapfp qiktepgtsf aqpcsstsgs tqtlpdftsv fsmpqsvavn nifikqemps
      181 eiplstnpqp sqlyqmplgn asgdittltf tsnsttains lsgvtmstgh tmssmvhrpv
      241 hpggsvkqyp hvshgqgnfn isgqfytvpg vnlppsppns qpgspenqpe lintisppps
      301 yeatfglklv qssqvppvpn glgtlsqghv vmqppkynrr nnpelekrri hhcdypgcsk
      361 vytksshlka hqrthtgvys dleskllahf shpfsipkgs creavvqgra aallapphhh
      421 lspkitlweg gfyrslvhlq kpndifkvcs efhf
//
LOCUS       XP_053931453             451 aa            linear   VRT 09-MAR-2023
DEFINITION  Krueppel-like factor 5 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931453
VERSION     XP_053931453.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075478.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..451
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..451
                     /product="Krueppel-like factor 5 isoform X3"
                     /calculated_mol_wt=49857
     Region          2..364
                     /region_name="KLF5_N"
                     /note="N-terminal domain of Kruppel-like factor 5;
                     cd21579"
                     /db_xref="CDD:410335"
     Region          372..391
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(376,378,380,382..383,386..387,390,406,408,412..413,
                     416..417,420,434,436,438,440..441,444..445,448)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          383..410
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          399..421
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          413..438
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          427..449
                     /region_name="zf-C2H2"
                     /note="Zinc finger, C2H2 type; pfam00096"
                     /db_xref="CDD:395048"
     Region          429..449
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..451
                     /gene="LOC104066240"
                     /coded_by="XM_054075478.1:5427..6782"
                     /db_xref="GeneID:104066240"
ORIGIN      
        1 mssglllptp lpedataftp lkpiimsgqp nedtpvfedi kppvrpldnp pdlaqlhpmr
       61 meqrmpplil earsemdkyl snevlpipmi pdkkyrresa svvdeffste kpastpysvn
      121 invilqdtth lrtglyrppk pvapfpqikt epgtsfaqpc sstsgstqtl pdftsvfsmp
      181 qsvavnnifi kqempseipl stnpqpsqly qmplgnasgd ittltftsns ttainslsgv
      241 tmstghtmss mvhrpvhpgg svkqyphvsh gqgnfnisgq fytvpgvnlp psppnsqpgs
      301 penqpelint ispppsyeat fglklvqssq vppvpnglgt lsqghvvmqp pkynrrnnpe
      361 lekrrihhcd ypgcskvytk sshlkahqrt htgekpykct wegcdwrfar sdeltrhyrk
      421 htgakpfkcl acgrcfsrsd hlalhmkrhq n
//
LOCUS       XP_053931454             423 aa            linear   VRT 09-MAR-2023
DEFINITION  Krueppel-like factor 5 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931454
VERSION     XP_053931454.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075479.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..423
                     /product="Krueppel-like factor 5 isoform X4"
                     /calculated_mol_wt=46527
     Region          4..317
                     /region_name="KLF5_N"
                     /note="N-terminal domain of Kruppel-like factor 5;
                     cd21579"
                     /db_xref="CDD:410335"
     Region          325..344
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..423
                     /gene="LOC104066240"
                     /coded_by="XM_054075479.1:158..1429"
                     /db_xref="GeneID:104066240"
ORIGIN      
        1 mstvaqqelh pmrmeqrmpp lilearsemd kylsnevlpi pmipdkkyrr esasvvdeff
       61 stekpastpy svninvilqd tthlrtglyr ppkpvapfpq iktepgtsfa qpcsstsgst
      121 qtlpdftsvf smpqsvavnn ifikqempse iplstnpqps qlyqmplgna sgdittltft
      181 snsttainsl sgvtmstght mssmvhrpvh pggsvkqyph vshgqgnfni sgqfytvpgv
      241 nlppsppnsq pgspenqpel intispppsy eatfglklvq ssqvppvpng lgtlsqghvv
      301 mqppkynrrn npelekrrih hcdypgcskv ytksshlkah qrthtgvysd leskllahfs
      361 hpfsipkgsc reavvqgraa allapphhhl spkitlwegg fyrslvhlqk pndifkvcse
      421 fhf
//
LOCUS       XP_053931455             395 aa            linear   VRT 09-MAR-2023
DEFINITION  Krueppel-like factor 5 isoform X5 [Cuculus canorus].
ACCESSION   XP_053931455
VERSION     XP_053931455.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075480.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..395
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..395
                     /product="Krueppel-like factor 5 isoform X5"
                     /calculated_mol_wt=43235
     Region          <1..289
                     /region_name="KLF5_N"
                     /note="N-terminal domain of Kruppel-like factor 5;
                     cd21579"
                     /db_xref="CDD:410335"
     Region          297..316
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..395
                     /gene="LOC104066240"
                     /coded_by="XM_054075480.1:98..1285"
                     /db_xref="GeneID:104066240"
ORIGIN      
        1 mdkylsnevl pipmipdkky rresasvvde ffstekpast pysvninvil qdtthlrtgl
       61 yrppkpvapf pqiktepgts faqpcsstsg stqtlpdfts vfsmpqsvav nnifikqemp
      121 seiplstnpq psqlyqmplg nasgdittlt ftsnsttain slsgvtmstg htmssmvhrp
      181 vhpggsvkqy phvshgqgnf nisgqfytvp gvnlppsppn sqpgspenqp elintisppp
      241 syeatfglkl vqssqvppvp nglgtlsqgh vvmqppkynr rnnpelekrr ihhcdypgcs
      301 kvytksshlk ahqrthtgvy sdleskllah fshpfsipkg screavvqgr aaallapphh
      361 hlspkitlwe ggfyrslvhl qkpndifkvc sefhf
//
LOCUS       XP_009567114             435 aa            linear   VRT 09-MAR-2023
DEFINITION  Krueppel-like factor 5 isoform X6 [Cuculus canorus].
ACCESSION   XP_009567114
VERSION     XP_009567114.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568819.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..435
                     /product="Krueppel-like factor 5 isoform X6"
                     /calculated_mol_wt=47883
     Region          2..348
                     /region_name="KLF5_N"
                     /note="N-terminal domain of Kruppel-like factor 5;
                     cd21579"
                     /db_xref="CDD:410335"
     Region          356..375
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(360,362,364,366..367,370..371,374,390,392,396..397,
                     400..401,404,418,420,422,424..425,428..429,432)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          367..394
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          383..405
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          397..422
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          413..433
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..435
                     /gene="LOC104066240"
                     /coded_by="XM_009568819.2:5426..6733"
                     /db_xref="GeneID:104066240"
ORIGIN      
        1 mssglllptp lpedataftp lkpiimsgqp nedtpvfedi kppvrpldnp pdlaqarsem
       61 dkylsnevlp ipmipdkkyr resasvvdef fstekpastp ysvninvilq dtthlrtgly
      121 rppkpvapfp qiktepgtsf aqpcsstsgs tqtlpdftsv fsmpqsvavn nifikqemps
      181 eiplstnpqp sqlyqmplgn asgdittltf tsnsttains lsgvtmstgh tmssmvhrpv
      241 hpggsvkqyp hvshgqgnfn isgqfytvpg vnlppsppns qpgspenqpe lintisppps
      301 yeatfglklv qssqvppvpn glgtlsqghv vmqppkynrr nnpelekrri hhcdypgcsk
      361 vytksshlka hqrthtgekp ykctwegcdw rfarsdeltr hyrkhtgakp fkclacgrcf
      421 srsdhlalhm krhqn
//
LOCUS       XP_053931457             375 aa            linear   VRT 09-MAR-2023
DEFINITION  Krueppel-like factor 8 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931457
VERSION     XP_053931457.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075482.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..375
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..375
                     /product="Krueppel-like factor 8 isoform X1"
                     /calculated_mol_wt=39808
     Region          56..227
                     /region_name="KLF8_12_N"
                     /note="N-terminal domain of Kruppel-like factor (KLF) 8,
                     KLF12, and similar proteins; cl40450"
                     /db_xref="CDD:424081"
     Region          <285..>362
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          292..314
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(299,301,303,305..306,309..310,313,329,331,335..336,
                     339..340,343,357,359,361,363..364,367..368,371)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          322..344
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          336..361
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          352..372
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..375
                     /gene="KLF8"
                     /coded_by="XM_054075482.1:16..1143"
                     /db_xref="GeneID:104066241"
ORIGIN      
        1 mwktpankvl karfgvlgst htssawgtqg vssidpvqlg rsweggqgka tpamsssall
       61 aegpldppvl ladikteppe ellasdcgqp qaepvdlsln ksktaaapap ppppptsvqs
      121 spllvapplp tpaavsiaps glsstsaipa vlspgsilas tqgsggqqil hvihtipsvn
      181 lpskmgnlqt ipvvvqslpv vyttmptdgv taitvpligg dgknagsafl srpppvkidp
      241 gsmypmamss dsedsasesg papfqdlqrd rpaargqrae spdlkkrrih qcdfegcnkv
      301 ytksshlkah rrihtgekpy kctwegctwk farsdeltrh frkhtgikpf rcsdcdrsfs
      361 rsdhlalhrr rhimm
//
LOCUS       XP_053931458             374 aa            linear   VRT 09-MAR-2023
DEFINITION  Krueppel-like factor 8 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931458
VERSION     XP_053931458.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075483.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..374
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..374
                     /product="Krueppel-like factor 8 isoform X2"
                     /calculated_mol_wt=39665
     Region          56..227
                     /region_name="KLF8_12_N"
                     /note="N-terminal domain of Kruppel-like factor (KLF) 8,
                     KLF12, and similar proteins; cl40450"
                     /db_xref="CDD:424081"
     Region          <261..>361
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          291..313
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(298,300,302,304..305,308..309,312,328,330,334..335,
                     338..339,342,356,358,360,362..363,366..367,370)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          321..343
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          335..360
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          351..371
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..374
                     /gene="KLF8"
                     /coded_by="XM_054075483.1:16..1140"
                     /db_xref="GeneID:104066241"
ORIGIN      
        1 mwktpankvl karfgvlgst htssawgtqg vssidpvqlg rsweggqgka tpamsssall
       61 aegpldppvl ladikteppe ellasdcgqp qaepvdlsln ksktaaapap ppppptsvqs
      121 spllvapplp tpaavsiaps glsstsaipa vlspgsilas tqgsggqqil hvihtipsvn
      181 lpskmgnlqt ipvvvqslpv vyttmptdgv taitvpligg dgknagsafl srpppvkidp
      241 gsmypmamss dsedsasesg papfqdlqre paargqraes pdlkkrrihq cdfegcnkvy
      301 tksshlkahr rihtgekpyk ctwegctwkf arsdeltrhf rkhtgikpfr csdcdrsfsr
      361 sdhlalhrrr himm
//
LOCUS       XP_053931459             342 aa            linear   VRT 09-MAR-2023
DEFINITION  Krueppel-like factor 8 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931459
VERSION     XP_053931459.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075484.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..342
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..342
                     /product="Krueppel-like factor 8 isoform X3"
                     /calculated_mol_wt=36141
     Region          23..194
                     /region_name="KLF8_12_N"
                     /note="N-terminal domain of Kruppel-like factor (KLF) 8,
                     KLF12, and similar proteins; cl40450"
                     /db_xref="CDD:424081"
     Region          <252..>329
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          259..281
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(266,268,270,272..273,276..277,280,296,298,302..303,
                     306..307,310,324,326,328,330..331,334..335,338)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          289..311
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          303..328
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          319..339
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..342
                     /gene="KLF8"
                     /coded_by="XM_054075484.1:108..1136"
                     /db_xref="GeneID:104066241"
ORIGIN      
        1 milpaegmsa gsgqgkatpa msssallaeg pldppvllad ikteppeell asdcgqpqae
       61 pvdlslnksk taaapapppp pptsvqsspl lvapplptpa avsiapsgls stsaipavls
      121 pgsilastqg sggqqilhvi htipsvnlps kmgnlqtipv vvqslpvvyt tmptdgvtai
      181 tvpliggdgk nagsaflsrp ppvkidpgsm ypmamssdse dsasesgpap fqdlqrdrpa
      241 argqraespd lkkrrihqcd fegcnkvytk sshlkahrri htgekpykct wegctwkfar
      301 sdeltrhfrk htgikpfrcs dcdrsfsrsd hlalhrrrhi mm
//
LOCUS       XP_053931460             339 aa            linear   VRT 09-MAR-2023
DEFINITION  Krueppel-like factor 8 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931460
VERSION     XP_053931460.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075485.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..339
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..339
                     /product="Krueppel-like factor 8 isoform X4"
                     /calculated_mol_wt=35942
     Region          20..191
                     /region_name="KLF8_12_N"
                     /note="N-terminal domain of Kruppel-like factor (KLF) 8,
                     KLF12, and similar proteins; cl40450"
                     /db_xref="CDD:424081"
     Region          <249..>326
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          256..278
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(263,265,267,269..270,273..274,277,293,295,299..300,
                     303..304,307,321,323,325,327..328,331..332,335)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          286..308
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          300..325
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          316..336
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..339
                     /gene="KLF8"
                     /coded_by="XM_054075485.1:40..1059"
                     /db_xref="GeneID:104066241"
ORIGIN      
        1 mgseeargkg qgkatpamss sallaegpld ppvlladikt eppeellasd cgqpqaepvd
       61 lslnksktaa apappppppt svqsspllva pplptpaavs iapsglssts aipavlspgs
      121 ilastqgsgg qqilhvihti psvnlpskmg nlqtipvvvq slpvvyttmp tdgvtaitvp
      181 liggdgknag saflsrpppv kidpgsmypm amssdsedsa sesgpapfqd lqrdrpaarg
      241 qraespdlkk rrihqcdfeg cnkvytkssh lkahrrihtg ekpykctweg ctwkfarsde
      301 ltrhfrkhtg ikpfrcsdcd rsfsrsdhla lhrrrhimm
//
LOCUS       XP_053931461             322 aa            linear   VRT 09-MAR-2023
DEFINITION  Krueppel-like factor 8 isoform X5 [Cuculus canorus].
ACCESSION   XP_053931461
VERSION     XP_053931461.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075486.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..322
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..322
                     /product="Krueppel-like factor 8 isoform X5"
                     /calculated_mol_wt=34285
     Region          3..174
                     /region_name="KLF8_12_N"
                     /note="N-terminal domain of Kruppel-like factor (KLF) 8,
                     KLF12, and similar proteins; cl40450"
                     /db_xref="CDD:424081"
     Region          <232..>309
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          239..261
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(246,248,250,252..253,256..257,260,276,278,282..283,
                     286..287,290,304,306,308,310..311,314..315,318)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          269..291
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          283..308
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          299..319
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..322
                     /gene="KLF8"
                     /coded_by="XM_054075486.1:88..1056"
                     /db_xref="GeneID:104066241"
ORIGIN      
        1 msssallaeg pldppvllad ikteppeell asdcgqpqae pvdlslnksk taaapapppp
       61 pptsvqsspl lvapplptpa avsiapsgls stsaipavls pgsilastqg sggqqilhvi
      121 htipsvnlps kmgnlqtipv vvqslpvvyt tmptdgvtai tvpliggdgk nagsaflsrp
      181 ppvkidpgsm ypmamssdse dsasesgpap fqdlqrdrpa argqraespd lkkrrihqcd
      241 fegcnkvytk sshlkahrri htgekpykct wegctwkfar sdeltrhfrk htgikpfrcs
      301 dcdrsfsrsd hlalhrrrhi mm
//
LOCUS       XP_053931462             322 aa            linear   VRT 09-MAR-2023
DEFINITION  Krueppel-like factor 8 isoform X5 [Cuculus canorus].
ACCESSION   XP_053931462
VERSION     XP_053931462.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075487.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..322
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..322
                     /product="Krueppel-like factor 8 isoform X5"
                     /calculated_mol_wt=34285
     Region          3..174
                     /region_name="KLF8_12_N"
                     /note="N-terminal domain of Kruppel-like factor (KLF) 8,
                     KLF12, and similar proteins; cl40450"
                     /db_xref="CDD:424081"
     Region          <232..>309
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          239..261
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(246,248,250,252..253,256..257,260,276,278,282..283,
                     286..287,290,304,306,308,310..311,314..315,318)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          269..291
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          283..308
                     /region_name="zf-H2C2_2"
                     /note="Zinc-finger double domain; pfam13465"
                     /db_xref="CDD:463886"
     Region          299..319
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..322
                     /gene="KLF8"
                     /coded_by="XM_054075487.1:51..1019"
                     /db_xref="GeneID:104066241"
ORIGIN      
        1 msssallaeg pldppvllad ikteppeell asdcgqpqae pvdlslnksk taaapapppp
       61 pptsvqsspl lvapplptpa avsiapsgls stsaipavls pgsilastqg sggqqilhvi
      121 htipsvnlps kmgnlqtipv vvqslpvvyt tmptdgvtai tvpliggdgk nagsaflsrp
      181 ppvkidpgsm ypmamssdse dsasesgpap fqdlqrdrpa argqraespd lkkrrihqcd
      241 fegcnkvytk sshlkahrri htgekpykct wegctwkfar sdeltrhfrk htgikpfrcs
      301 dcdrsfsrsd hlalhrrrhi mm
//
LOCUS       XP_053931463             910 aa            linear   VRT 09-MAR-2023
DEFINITION  angiomotin [Cuculus canorus].
ACCESSION   XP_053931463
VERSION     XP_053931463.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075488.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..910
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..910
                     /product="angiomotin"
                     /calculated_mol_wt=102066
     Region          <411..>655
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          577..773
                     /region_name="Angiomotin_C"
                     /note="Angiomotin C terminal; pfam12240"
                     /db_xref="CDD:463503"
     CDS             1..910
                     /gene="AMOT"
                     /coded_by="XM_054075488.1:786..3518"
                     /db_xref="GeneID:104058255"
ORIGIN      
        1 mrnseeqaat tvlqrllqeq lrygnpndnr nllalhqqat gnappfnstg spasqnegls
       61 sqdhqlvtha arqepqgqei qvdnsimekq lsprlqnsed lptyeeakvq sqyfrgqpha
      121 svgaafyvtg vtnqkmrteg rptvqrvspg kvhqdeglkd lkqghvrsls erlmqlslat
      181 sgvkahapvt saplsplspl spqqssdpyk nsgsnefykn svqppsqpnm kameqrgppp
      241 eypyknvstp smnckpqdsg hfyndhrmsq qgrsdgpmmr yqhppeygsv rqnpdvqlql
      301 qqrpphhhsp tssltslgsl tllqspppsr lspsqhqqpl tpgqgdpgiv prtqqpflsn
      361 qvhqgdlyrl cqpflgpqqq qgdsysvmsr aqqipspyqq mqvdpfaivs raqqmveils
      421 eenrslrqel dgcyekvarl qkleteiqqv seayknleks sskrdaleka mrnklegeir
      481 rlhdfnrdlr ermetankql aekefegsed nrktisqlfa qnketqreke kleielaaar
      541 sanedqrrhi eirdqalnna qakvvkleee lkkkqvyvek vekmqqalvq lqaacekreq
      601 lehrlrtrle releslrmqq rqgtsqaanv seynatalme llrekeeril aleadmtkwe
      661 qkyleesvmr qfaldaaatv aaqrdttvis hspnpsydts leariqkeee eillanrrcl
      721 dmegriktlh aqiiekdami kvlqqrsrke pgktdqlssm rpakslmsis nagsgllshs
      781 stlsstpile ekredkswkg slgvllgtey rsesipstps pvlpstplls shsktgsrdc
      841 stqtdrgseq nkaapstaap tagrlpstsl aysadktdgp lfhsstlerk apvqtvgqdl
      901 pdgemveyli
//
LOCUS       XP_053931464             910 aa            linear   VRT 09-MAR-2023
DEFINITION  angiomotin [Cuculus canorus].
ACCESSION   XP_053931464
VERSION     XP_053931464.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075489.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..910
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..910
                     /product="angiomotin"
                     /calculated_mol_wt=102066
     Region          <411..>655
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          577..773
                     /region_name="Angiomotin_C"
                     /note="Angiomotin C terminal; pfam12240"
                     /db_xref="CDD:463503"
     CDS             1..910
                     /gene="AMOT"
                     /coded_by="XM_054075489.1:369..3101"
                     /db_xref="GeneID:104058255"
ORIGIN      
        1 mrnseeqaat tvlqrllqeq lrygnpndnr nllalhqqat gnappfnstg spasqnegls
       61 sqdhqlvtha arqepqgqei qvdnsimekq lsprlqnsed lptyeeakvq sqyfrgqpha
      121 svgaafyvtg vtnqkmrteg rptvqrvspg kvhqdeglkd lkqghvrsls erlmqlslat
      181 sgvkahapvt saplsplspl spqqssdpyk nsgsnefykn svqppsqpnm kameqrgppp
      241 eypyknvstp smnckpqdsg hfyndhrmsq qgrsdgpmmr yqhppeygsv rqnpdvqlql
      301 qqrpphhhsp tssltslgsl tllqspppsr lspsqhqqpl tpgqgdpgiv prtqqpflsn
      361 qvhqgdlyrl cqpflgpqqq qgdsysvmsr aqqipspyqq mqvdpfaivs raqqmveils
      421 eenrslrqel dgcyekvarl qkleteiqqv seayknleks sskrdaleka mrnklegeir
      481 rlhdfnrdlr ermetankql aekefegsed nrktisqlfa qnketqreke kleielaaar
      541 sanedqrrhi eirdqalnna qakvvkleee lkkkqvyvek vekmqqalvq lqaacekreq
      601 lehrlrtrle releslrmqq rqgtsqaanv seynatalme llrekeeril aleadmtkwe
      661 qkyleesvmr qfaldaaatv aaqrdttvis hspnpsydts leariqkeee eillanrrcl
      721 dmegriktlh aqiiekdami kvlqqrsrke pgktdqlssm rpakslmsis nagsgllshs
      781 stlsstpile ekredkswkg slgvllgtey rsesipstps pvlpstplls shsktgsrdc
      841 stqtdrgseq nkaapstaap tagrlpstsl aysadktdgp lfhsstlerk apvqtvgqdl
      901 pdgemveyli
//
LOCUS       XP_053931465             910 aa            linear   VRT 09-MAR-2023
DEFINITION  angiomotin [Cuculus canorus].
ACCESSION   XP_053931465
VERSION     XP_053931465.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075490.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..910
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..910
                     /product="angiomotin"
                     /calculated_mol_wt=102066
     Region          <411..>655
                     /region_name="Smc"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; COG1196"
                     /db_xref="CDD:440809"
     Region          577..773
                     /region_name="Angiomotin_C"
                     /note="Angiomotin C terminal; pfam12240"
                     /db_xref="CDD:463503"
     CDS             1..910
                     /gene="AMOT"
                     /coded_by="XM_054075490.1:306..3038"
                     /db_xref="GeneID:104058255"
ORIGIN      
        1 mrnseeqaat tvlqrllqeq lrygnpndnr nllalhqqat gnappfnstg spasqnegls
       61 sqdhqlvtha arqepqgqei qvdnsimekq lsprlqnsed lptyeeakvq sqyfrgqpha
      121 svgaafyvtg vtnqkmrteg rptvqrvspg kvhqdeglkd lkqghvrsls erlmqlslat
      181 sgvkahapvt saplsplspl spqqssdpyk nsgsnefykn svqppsqpnm kameqrgppp
      241 eypyknvstp smnckpqdsg hfyndhrmsq qgrsdgpmmr yqhppeygsv rqnpdvqlql
      301 qqrpphhhsp tssltslgsl tllqspppsr lspsqhqqpl tpgqgdpgiv prtqqpflsn
      361 qvhqgdlyrl cqpflgpqqq qgdsysvmsr aqqipspyqq mqvdpfaivs raqqmveils
      421 eenrslrqel dgcyekvarl qkleteiqqv seayknleks sskrdaleka mrnklegeir
      481 rlhdfnrdlr ermetankql aekefegsed nrktisqlfa qnketqreke kleielaaar
      541 sanedqrrhi eirdqalnna qakvvkleee lkkkqvyvek vekmqqalvq lqaacekreq
      601 lehrlrtrle releslrmqq rqgtsqaanv seynatalme llrekeeril aleadmtkwe
      661 qkyleesvmr qfaldaaatv aaqrdttvis hspnpsydts leariqkeee eillanrrcl
      721 dmegriktlh aqiiekdami kvlqqrsrke pgktdqlssm rpakslmsis nagsgllshs
      781 stlsstpile ekredkswkg slgvllgtey rsesipstps pvlpstplls shsktgsrdc
      841 stqtdrgseq nkaapstaap tagrlpstsl aysadktdgp lfhsstlerk apvqtvgqdl
      901 pdgemveyli
//
LOCUS       XP_053931466             443 aa            linear   VRT 09-MAR-2023
DEFINITION  septin-6 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931466
VERSION     XP_053931466.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075491.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..443
                     /product="septin-6 isoform X1"
                     /calculated_mol_wt=50265
     Region          39..306
                     /region_name="CDC_Septin"
                     /note="CDC/Septin GTPase family; cd01850"
                     /db_xref="CDD:206649"
     Site            48..55
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206649"
     Site            order(50..56,100,103,183..184,186,238..239)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206649"
     Site            75..83
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206649"
     Site            77
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206649"
     Site            100..103
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206649"
     Site            order(102..138,140..149)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206649"
     Site            183..186
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206649"
     Site            238..240
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206649"
     CDS             1..443
                     /gene="SEPTIN6"
                     /coded_by="XM_054075491.1:110..1441"
                     /db_xref="GeneID:104064031"
ORIGIN      
        1 maaaevarqg egcrtvplsg hvgfdslpdq lvnksvnhgf cfnilcvget glgkstlmdt
       61 lfntkfegdp ashsqpgvql ksntydlqes nvnlkltivs tvgfgdqink edsykpivef
      121 idaqfeaylq eelkikrvlh nyhdtrihac lyfiaptghs lksldlvtmk kldskvniip
      181 iiaksdaisk seltkfkiki tselvsngvq iyqfptddes vaeingtmna hlpfavigst
      241 eelkignkmm karqypwgtv qveneahcdf vklremlirv nmedlreqth trhyelyrrc
      301 kleemgfkdt dpdskpfslq etyeakrnef lgelqkkeea mrqmfvqrvk ekeaelkeae
      361 kelhekfdrl kklhqdekkk ledkkksldd evnafkqrkt aaellqsqaq qaggsqtlkr
      421 dkerknsyvc avlqlaavcl hga
//
LOCUS       XP_053931467             433 aa            linear   VRT 09-MAR-2023
DEFINITION  septin-6 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931467
VERSION     XP_053931467.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075492.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..433
                     /product="septin-6 isoform X2"
                     /calculated_mol_wt=49408
     Region          39..306
                     /region_name="CDC_Septin"
                     /note="CDC/Septin GTPase family; cd01850"
                     /db_xref="CDD:206649"
     Site            48..55
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206649"
     Site            order(50..56,100,103,183..184,186,238..239)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206649"
     Site            75..83
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206649"
     Site            77
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206649"
     Site            100..103
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206649"
     Site            order(102..138,140..149)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206649"
     Site            183..186
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206649"
     Site            238..240
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206649"
     CDS             1..433
                     /gene="SEPTIN6"
                     /coded_by="XM_054075492.1:109..1410"
                     /db_xref="GeneID:104064031"
ORIGIN      
        1 maaaevarqg egcrtvplsg hvgfdslpdq lvnksvnhgf cfnilcvget glgkstlmdt
       61 lfntkfegdp ashsqpgvql ksntydlqes nvnlkltivs tvgfgdqink edsykpivef
      121 idaqfeaylq eelkikrvlh nyhdtrihac lyfiaptghs lksldlvtmk kldskvniip
      181 iiaksdaisk seltkfkiki tselvsngvq iyqfptddes vaeingtmna hlpfavigst
      241 eelkignkmm karqypwgtv qveneahcdf vklremlirv nmedlreqth trhyelyrrc
      301 kleemgfkdt dpdskpfslq etyeakrnef lgelqkkeea mrqmfvqrvk ekeaelkeae
      361 kelhekfdrl kklhqdekkk ledkkksldd evnafkqrkt aaellqsqaq qaggsqtlkr
      421 dkerknnpwl cte
//
LOCUS       XP_053931468             430 aa            linear   VRT 09-MAR-2023
DEFINITION  septin-6 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931468
VERSION     XP_053931468.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075493.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..430
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..430
                     /product="septin-6 isoform X3"
                     /calculated_mol_wt=48969
     Region          39..306
                     /region_name="CDC_Septin"
                     /note="CDC/Septin GTPase family; cd01850"
                     /db_xref="CDD:206649"
     Site            48..55
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206649"
     Site            order(50..56,100,103,183..184,186,238..239)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206649"
     Site            75..83
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206649"
     Site            77
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206649"
     Site            100..103
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206649"
     Site            order(102..138,140..149)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206649"
     Site            183..186
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206649"
     Site            238..240
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206649"
     CDS             1..430
                     /gene="SEPTIN6"
                     /coded_by="XM_054075493.1:109..1401"
                     /db_xref="GeneID:104064031"
ORIGIN      
        1 maaaevarqg egcrtvplsg hvgfdslpdq lvnksvnhgf cfnilcvget glgkstlmdt
       61 lfntkfegdp ashsqpgvql ksntydlqes nvnlkltivs tvgfgdqink edsykpivef
      121 idaqfeaylq eelkikrvlh nyhdtrihac lyfiaptghs lksldlvtmk kldskvniip
      181 iiaksdaisk seltkfkiki tselvsngvq iyqfptddes vaeingtmna hlpfavigst
      241 eelkignkmm karqypwgtv qveneahcdf vklremlirv nmedlreqth trhyelyrrc
      301 kleemgfkdt dpdskpfslq etyeakrnef lgelqkkeea mrqmfvqrvk ekeaelkeae
      361 kelhekfdrl kklhqdekkk ledkkksldd evnafkqrkt aaellqsqaq qaggsqtlkr
      421 dkerknsgfl
//
LOCUS       XP_053931469             428 aa            linear   VRT 09-MAR-2023
DEFINITION  septin-6 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931469
VERSION     XP_053931469.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075494.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..428
                     /product="septin-6 isoform X4"
                     /calculated_mol_wt=48859
     Region          39..306
                     /region_name="CDC_Septin"
                     /note="CDC/Septin GTPase family; cd01850"
                     /db_xref="CDD:206649"
     Site            48..55
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206649"
     Site            order(50..56,100,103,183..184,186,238..239)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206649"
     Site            75..83
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206649"
     Site            77
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206649"
     Site            100..103
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206649"
     Site            order(102..138,140..149)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206649"
     Site            183..186
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206649"
     Site            238..240
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206649"
     CDS             1..428
                     /gene="SEPTIN6"
                     /coded_by="XM_054075494.1:109..1395"
                     /db_xref="GeneID:104064031"
ORIGIN      
        1 maaaevarqg egcrtvplsg hvgfdslpdq lvnksvnhgf cfnilcvget glgkstlmdt
       61 lfntkfegdp ashsqpgvql ksntydlqes nvnlkltivs tvgfgdqink edsykpivef
      121 idaqfeaylq eelkikrvlh nyhdtrihac lyfiaptghs lksldlvtmk kldskvniip
      181 iiaksdaisk seltkfkiki tselvsngvq iyqfptddes vaeingtmna hlpfavigst
      241 eelkignkmm karqypwgtv qveneahcdf vklremlirv nmedlreqth trhyelyrrc
      301 kleemgfkdt dpdskpfslq etyeakrnef lgelqkkeea mrqmfvqrvk ekeaelkeae
      361 kelhekfdrl kklhqdekkk ledkkksldd evnafkqrkt aaellqsqaq qaggsqtlkr
      421 dkerknff
//
LOCUS       XP_053931470             426 aa            linear   VRT 09-MAR-2023
DEFINITION  septin-6 isoform X5 [Cuculus canorus].
ACCESSION   XP_053931470
VERSION     XP_053931470.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075495.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..426
                     /product="septin-6 isoform X5"
                     /calculated_mol_wt=48565
     Region          39..306
                     /region_name="CDC_Septin"
                     /note="CDC/Septin GTPase family; cd01850"
                     /db_xref="CDD:206649"
     Site            48..55
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206649"
     Site            order(50..56,100,103,183..184,186,238..239)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206649"
     Site            75..83
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206649"
     Site            77
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206649"
     Site            100..103
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206649"
     Site            order(102..138,140..149)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206649"
     Site            183..186
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206649"
     Site            238..240
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206649"
     CDS             1..426
                     /gene="SEPTIN6"
                     /coded_by="XM_054075495.1:109..1389"
                     /db_xref="GeneID:104064031"
ORIGIN      
        1 maaaevarqg egcrtvplsg hvgfdslpdq lvnksvnhgf cfnilcvget glgkstlmdt
       61 lfntkfegdp ashsqpgvql ksntydlqes nvnlkltivs tvgfgdqink edsykpivef
      121 idaqfeaylq eelkikrvlh nyhdtrihac lyfiaptghs lksldlvtmk kldskvniip
      181 iiaksdaisk seltkfkiki tselvsngvq iyqfptddes vaeingtmna hlpfavigst
      241 eelkignkmm karqypwgtv qveneahcdf vklremlirv nmedlreqth trhyelyrrc
      301 kleemgfkdt dpdskpfslq etyeakrnef lgelqkkeea mrqmfvqrvk ekeaelkeae
      361 kelhekfdrl kklhqdekkk ledkkksldd evnafkqrkt aaellqsqaq qaggsqtlkr
      421 dkerkn
//
LOCUS       XP_053931471             595 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase RLIM isoform X1 [Cuculus canorus].
ACCESSION   XP_053931471
VERSION     XP_053931471.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075496.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..595
                     /product="E3 ubiquitin-protein ligase RLIM isoform X1"
                     /calculated_mol_wt=65845
     Region          161..>356
                     /region_name="DUF5585"
                     /note="Family of unknown function (DUF5585); pfam17823"
                     /db_xref="CDD:465521"
     Region          539..589
                     /region_name="RING-H2_RNF12"
                     /note="RING finger, H2 subclass, found in RING finger
                     protein 12 (RNF12) and similar proteins; cd16674"
                     /db_xref="CDD:438336"
     CDS             1..595
                     /gene="RLIM"
                     /coded_by="XM_054075496.1:163..1950"
                     /db_xref="GeneID:104058177"
ORIGIN      
        1 megsdssdkg sidqseaqrq sqldrldree afyqfvnnls eedyrlmrdn nllgtpgeit
       61 eeellrrlhq vkegppqqns dehrgaesae dvsngdsiid wlnsvrqtgn ttrsgqrgnq
      121 swravsrtnp nsgdfrfsle invnrnngna npetenepsv epssgedlen sqsdseiprs
      181 espsvrqpgs erstseeltt eeaspprgqr rarsrspeqr rtrartdrsr spinpvnetp
      241 rrsrhntssq tldpssgnea egssrtrqhv tlrqhavgte ipsenavlfs tpetrpvpqa
      301 agssetnsts esaapgqrpp tivldlqvrr vrpgeyrqrd sianrtrsrs qtpnntvtye
      361 serggfrrtf srseragvrt yvstiripir rilntglset tsvaiqtmlr qimtgfgels
      421 yfmysdsdad psgptpnqnv daseaqndgg gtssnestdv ssgevyeggn eggstsgarr
      481 egrntrgsvt feesgslpfl slaqffllne ddddqprglt keqidnlamr nfgesdalkt
      541 csvciteyte gnklrklpcs heyhvhcidr wlsenstcpi crravlasgn resiv
//
LOCUS       XP_053931472             567 aa            linear   VRT 09-MAR-2023
DEFINITION  E3 ubiquitin-protein ligase RLIM isoform X2 [Cuculus canorus].
ACCESSION   XP_053931472
VERSION     XP_053931472.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075497.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..567
                     /product="E3 ubiquitin-protein ligase RLIM isoform X2"
                     /calculated_mol_wt=62538
     Region          133..>328
                     /region_name="DUF5585"
                     /note="Family of unknown function (DUF5585); pfam17823"
                     /db_xref="CDD:465521"
     Region          511..561
                     /region_name="RING-H2_RNF12"
                     /note="RING finger, H2 subclass, found in RING finger
                     protein 12 (RNF12) and similar proteins; cd16674"
                     /db_xref="CDD:438336"
     CDS             1..567
                     /gene="RLIM"
                     /coded_by="XM_054075497.1:163..1866"
                     /db_xref="GeneID:104058177"
ORIGIN      
        1 megsdssdkg sidqseaqrq sqldrldree afyqfvnnls eedyrlmrdn nllgtpgaes
       61 aedvsngdsi idwlnsvrqt gnttrsgqrg nqswravsrt npnsgdfrfs leinvnrnng
      121 nanpetenep svepssgedl ensqsdseip rsespsvrqp gserstseel tteeaspprg
      181 qrrarsrspe qrrtrartdr srspinpvne tprrsrhnts sqtldpssgn eaegssrtrq
      241 hvtlrqhavg teipsenavl fstpetrpvp qaagssetns tsesaapgqr pptivldlqv
      301 rrvrpgeyrq rdsianrtrs rsqtpnntvt yeserggfrr tfsrseragv rtyvstirip
      361 irrilntgls ettsvaiqtm lrqimtgfge lsyfmysdsd adpsgptpnq nvdaseaqnd
      421 gggtssnest dvssgevyeg gneggstsga rregrntrgs vtfeesgslp flslaqffll
      481 neddddqprg ltkeqidnla mrnfgesdal ktcsvcitey tegnklrklp csheyhvhci
      541 drwlsenstc picrravlas gnresiv
//
LOCUS       XP_053931474             414 aa            linear   VRT 09-MAR-2023
DEFINITION  cysteinyl leukotriene receptor 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931474
VERSION     XP_053931474.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075499.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..414
                     /product="cysteinyl leukotriene receptor 1 isoform X1"
                     /calculated_mol_wt=46684
     Region          89..370
                     /region_name="7tmA_CysLTR1"
                     /note="cysteinyl leukotriene receptor 1, member of the
                     class A family of seven-transmembrane G protein-coupled
                     receptors; cd15158"
                     /db_xref="CDD:320286"
     Region          89..116
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320286"
     Region          123..148
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320286"
     Site            order(144,147..148,161..166,168..169,172,217,219..223,250,
                     253..255,257..259,261..262,310,313..314,316..317,320,
                     337..338,340..342,345,348..349)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320286"
     Region          161..191
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320286"
     Region          203..225
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320286"
     Region          250..279
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320286"
     Region          290..320
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320286"
     Region          338..363
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320286"
     CDS             1..414
                     /gene="CYSLTR1"
                     /coded_by="XM_054075499.1:2604..3848"
                     /db_xref="GeneID:104054323"
ORIGIN      
        1 mptersdlap gellwaksrs gaapvppshr tqpaaepgaf prssdafqpg lrraalpslv
       61 vgsvpqlgnm talfdnlsch hsiddfrnrv ystlysmisi mgfvgngvvl yvliktyrqk
      121 tafqvymlnl avsdflcvct lplrviyyvh ngnwffsdfl crissyalyv nlycsiffmt
      181 amsffrciai vfpvqhinlv tekkakfvci giwifvtlts tpflqngtye hgnktkcfep
      241 pedsektnlv vvldfialfv gfifpfvvit lcytmiirtl lknslkknqa nrrkavwmii
      301 ivtatflvsf tpyhilrtvh lhvlrlknat cedaiylqks vvvtlplaas nccfdpllyf
      361 fsggnfrkrl ttfrkassss ltqafrkkfs vkdkdeepfg esqrenekas vvps
//
LOCUS       XP_053931475             414 aa            linear   VRT 09-MAR-2023
DEFINITION  cysteinyl leukotriene receptor 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931475
VERSION     XP_053931475.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075500.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..414
                     /product="cysteinyl leukotriene receptor 1 isoform X1"
                     /calculated_mol_wt=46684
     Region          89..370
                     /region_name="7tmA_CysLTR1"
                     /note="cysteinyl leukotriene receptor 1, member of the
                     class A family of seven-transmembrane G protein-coupled
                     receptors; cd15158"
                     /db_xref="CDD:320286"
     Region          89..116
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320286"
     Region          123..148
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320286"
     Site            order(144,147..148,161..166,168..169,172,217,219..223,250,
                     253..255,257..259,261..262,310,313..314,316..317,320,
                     337..338,340..342,345,348..349)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320286"
     Region          161..191
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320286"
     Region          203..225
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320286"
     Region          250..279
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320286"
     Region          290..320
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320286"
     Region          338..363
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320286"
     CDS             1..414
                     /gene="CYSLTR1"
                     /coded_by="XM_054075500.1:256..1500"
                     /db_xref="GeneID:104054323"
ORIGIN      
        1 mptersdlap gellwaksrs gaapvppshr tqpaaepgaf prssdafqpg lrraalpslv
       61 vgsvpqlgnm talfdnlsch hsiddfrnrv ystlysmisi mgfvgngvvl yvliktyrqk
      121 tafqvymlnl avsdflcvct lplrviyyvh ngnwffsdfl crissyalyv nlycsiffmt
      181 amsffrciai vfpvqhinlv tekkakfvci giwifvtlts tpflqngtye hgnktkcfep
      241 pedsektnlv vvldfialfv gfifpfvvit lcytmiirtl lknslkknqa nrrkavwmii
      301 ivtatflvsf tpyhilrtvh lhvlrlknat cedaiylqks vvvtlplaas nccfdpllyf
      361 fsggnfrkrl ttfrkassss ltqafrkkfs vkdkdeepfg esqrenekas vvps
//
LOCUS       XP_053931476             414 aa            linear   VRT 09-MAR-2023
DEFINITION  cysteinyl leukotriene receptor 1 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931476
VERSION     XP_053931476.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075501.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..414
                     /product="cysteinyl leukotriene receptor 1 isoform X1"
                     /calculated_mol_wt=46684
     Region          89..370
                     /region_name="7tmA_CysLTR1"
                     /note="cysteinyl leukotriene receptor 1, member of the
                     class A family of seven-transmembrane G protein-coupled
                     receptors; cd15158"
                     /db_xref="CDD:320286"
     Region          89..116
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320286"
     Region          123..148
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320286"
     Site            order(144,147..148,161..166,168..169,172,217,219..223,250,
                     253..255,257..259,261..262,310,313..314,316..317,320,
                     337..338,340..342,345,348..349)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320286"
     Region          161..191
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320286"
     Region          203..225
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320286"
     Region          250..279
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320286"
     Region          290..320
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320286"
     Region          338..363
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320286"
     CDS             1..414
                     /gene="CYSLTR1"
                     /coded_by="XM_054075501.1:260..1504"
                     /db_xref="GeneID:104054323"
ORIGIN      
        1 mptersdlap gellwaksrs gaapvppshr tqpaaepgaf prssdafqpg lrraalpslv
       61 vgsvpqlgnm talfdnlsch hsiddfrnrv ystlysmisi mgfvgngvvl yvliktyrqk
      121 tafqvymlnl avsdflcvct lplrviyyvh ngnwffsdfl crissyalyv nlycsiffmt
      181 amsffrciai vfpvqhinlv tekkakfvci giwifvtlts tpflqngtye hgnktkcfep
      241 pedsektnlv vvldfialfv gfifpfvvit lcytmiirtl lknslkknqa nrrkavwmii
      301 ivtatflvsf tpyhilrtvh lhvlrlknat cedaiylqks vvvtlplaas nccfdpllyf
      361 fsggnfrkrl ttfrkassss ltqafrkkfs vkdkdeepfg esqrenekas vvps
//
LOCUS       XP_053931477             345 aa            linear   VRT 09-MAR-2023
DEFINITION  cysteinyl leukotriene receptor 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931477
VERSION     XP_053931477.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075502.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..345
                     /product="cysteinyl leukotriene receptor 1 isoform X2"
                     /calculated_mol_wt=39545
     Region          20..301
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          22..46
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          55..76
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          93..115
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          138..154
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          182..205
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          227..249
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          269..294
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..345
                     /gene="CYSLTR1"
                     /coded_by="XM_054075502.1:1232..2269"
                     /db_xref="GeneID:104054323"
ORIGIN      
        1 mtalfdnlsc hhsiddfrnr vystlysmis imgfvgngvv lyvliktyrq ktafqvymln
       61 lavsdflcvc tlplrviyyv hngnwffsdf lcrissyaly vnlycsiffm tamsffrcia
      121 ivfpvqhinl vtekkakfvc igiwifvtlt stpflqngty ehgnktkcfe ppedsektnl
      181 vvvldfialf vgfifpfvvi tlcytmiirt llknslkknq anrrkavwmi iivtatflvs
      241 ftpyhilrtv hlhvlrlkna tcedaiylqk svvvtlplaa snccfdplly ffsggnfrkr
      301 lttfrkasss sltqafrkkf svkdkdeepf gesqreneka svvps
//
LOCUS       XP_053931478             345 aa            linear   VRT 09-MAR-2023
DEFINITION  cysteinyl leukotriene receptor 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931478
VERSION     XP_053931478.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075503.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..345
                     /product="cysteinyl leukotriene receptor 1 isoform X2"
                     /calculated_mol_wt=39545
     Region          20..301
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          22..46
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          55..76
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          93..115
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          138..154
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          182..205
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          227..249
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          269..294
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..345
                     /gene="CYSLTR1"
                     /coded_by="XM_054075503.1:3093..4130"
                     /db_xref="GeneID:104054323"
ORIGIN      
        1 mtalfdnlsc hhsiddfrnr vystlysmis imgfvgngvv lyvliktyrq ktafqvymln
       61 lavsdflcvc tlplrviyyv hngnwffsdf lcrissyaly vnlycsiffm tamsffrcia
      121 ivfpvqhinl vtekkakfvc igiwifvtlt stpflqngty ehgnktkcfe ppedsektnl
      181 vvvldfialf vgfifpfvvi tlcytmiirt llknslkknq anrrkavwmi iivtatflvs
      241 ftpyhilrtv hlhvlrlkna tcedaiylqk svvvtlplaa snccfdplly ffsggnfrkr
      301 lttfrkasss sltqafrkkf svkdkdeepf gesqreneka svvps
//
LOCUS       XP_053931479             345 aa            linear   VRT 09-MAR-2023
DEFINITION  cysteinyl leukotriene receptor 1 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931479
VERSION     XP_053931479.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075504.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..345
                     /product="cysteinyl leukotriene receptor 1 isoform X2"
                     /calculated_mol_wt=39545
     Region          20..301
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          22..46
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          55..76
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          93..115
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          138..154
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          182..205
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          227..249
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          269..294
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..345
                     /gene="CYSLTR1"
                     /coded_by="XM_054075504.1:260..1297"
                     /db_xref="GeneID:104054323"
ORIGIN      
        1 mtalfdnlsc hhsiddfrnr vystlysmis imgfvgngvv lyvliktyrq ktafqvymln
       61 lavsdflcvc tlplrviyyv hngnwffsdf lcrissyaly vnlycsiffm tamsffrcia
      121 ivfpvqhinl vtekkakfvc igiwifvtlt stpflqngty ehgnktkcfe ppedsektnl
      181 vvvldfialf vgfifpfvvi tlcytmiirt llknslkknq anrrkavwmi iivtatflvs
      241 ftpyhilrtv hlhvlrlkna tcedaiylqk svvvtlplaa snccfdplly ffsggnfrkr
      301 lttfrkasss sltqafrkkf svkdkdeepf gesqreneka svvps
//
LOCUS       XP_009553559             371 aa            linear   VRT 09-MAR-2023
DEFINITION  putative P2Y purinoceptor 10 [Cuculus canorus].
ACCESSION   XP_009553559
VERSION     XP_009553559.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009555264.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009553559.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..371
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..371
                     /product="putative P2Y purinoceptor 10"
                     /calculated_mol_wt=42503
     Region          20..302
                     /region_name="7tmA_P2Y10"
                     /note="P2Y purinoceptor 10, member of the class A family
                     of seven-transmembrane G protein-coupled receptors;
                     cd15153"
                     /db_xref="CDD:320281"
     Region          20..47
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320281"
     Region          54..79
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320281"
     Site            order(75,78..79,91..96,98..99,102,146,148..152,181,
                     184..186,188..190,192..193,242,245..246,248..249,252,
                     269..270,272..274,277,280..281)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320281"
     Region          91..121
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320281"
     Region          132..154
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320281"
     Region          181..210
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320281"
     Region          222..252
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320281"
     Region          270..295
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320281"
     CDS             1..371
                     /gene="LOC104054290"
                     /coded_by="XM_009555264.2:258..1373"
                     /db_xref="GeneID:104054290"
ORIGIN      
        1 mesnvssgnc tdpqmsfqst lyattytlif ipgllansaa lwvlcrfisk kskaiifmin
       61 lavadlahvl slplrmyyyi nhtwpfgsfl cqvcfylkyl nmyasicflt cisiqrylfl
      121 lhpfkakdwk rrydvaisaa vwlfvgaacl pllvvrspal snstntcfsd lgvkqlspaa
      181 sitlvtvael fgfvipfgii acctwkmrrs lqecptqlqn tnekqkalrm vlmcavvffi
      241 cftpyhinfp ffmmvienii qdcaihrstl rfhpislcla slnccldpvl yyfmtsefqd
      301 qllrhncaal rarfmrhrss fsvtetshdi hmkkrnlprf rfwslpkffg rinsmeippm
      361 ppdelllesi s
//
LOCUS       XP_053931480             348 aa            linear   VRT 09-MAR-2023
DEFINITION  lysophosphatidic acid receptor 4 [Cuculus canorus].
ACCESSION   XP_053931480
VERSION     XP_053931480.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075505.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..348
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..348
                     /product="lysophosphatidic acid receptor 4"
                     /calculated_mol_wt=39186
     Region          19..301
                     /region_name="7tmA_LPAR4"
                     /note="lysophosphatidic acid receptor 4, member of the
                     class A family of seven-transmembrane G protein-coupled
                     receptors; cd15155"
                     /db_xref="CDD:320283"
     Region          19..46
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320283"
     Region          53..78
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320283"
     Site            order(74,77..78,90..95,97..98,101,146,148..152,180,
                     183..185,187..189,191..192,241,244..245,247..248,251,
                     268..269,271..273,276,279..280)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320283"
     Region          90..120
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320283"
     Region          132..154
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320283"
     Region          180..209
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320283"
     Region          221..251
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320283"
     Region          269..294
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320283"
     CDS             1..348
                     /gene="LPAR4"
                     /coded_by="XM_054075505.1:558..1604"
                     /db_xref="GeneID:104054292"
ORIGIN      
        1 mgnhsnnhtc ltddsfkynl ygavysvvfi lglitncasl fvfcfrmkmr setaifmtnl
       61 avsdllfvft lpfkifynfn rhwpfgdslc kisgtafltn iygsmlfltc isvdrflaiv
      121 ypfrsrtirt rrnsaivcag vwilvlsggi saslfsttnv sntsttcfeg fskriwktyl
      181 skitifievv gfiiplllnl tcsslvlrtl rkpatlsqig tnkekvlkmi ivhvaifvvc
      241 fvpynsilfl yalvrsqtia ncslerfart mypitlciat mnccfdpfiy yftsesfqks
      301 fniktqikmd slfktetplt ktalpapqde isdqamtngg dptseshf
//
LOCUS       XP_053931481             348 aa            linear   VRT 09-MAR-2023
DEFINITION  lysophosphatidic acid receptor 4 [Cuculus canorus].
ACCESSION   XP_053931481
VERSION     XP_053931481.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075506.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..348
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..348
                     /product="lysophosphatidic acid receptor 4"
                     /calculated_mol_wt=39186
     Region          19..301
                     /region_name="7tmA_LPAR4"
                     /note="lysophosphatidic acid receptor 4, member of the
                     class A family of seven-transmembrane G protein-coupled
                     receptors; cd15155"
                     /db_xref="CDD:320283"
     Region          19..46
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320283"
     Region          53..78
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320283"
     Site            order(74,77..78,90..95,97..98,101,146,148..152,180,
                     183..185,187..189,191..192,241,244..245,247..248,251,
                     268..269,271..273,276,279..280)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320283"
     Region          90..120
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320283"
     Region          132..154
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320283"
     Region          180..209
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320283"
     Region          221..251
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320283"
     Region          269..294
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320283"
     CDS             1..348
                     /gene="LPAR4"
                     /coded_by="XM_054075506.1:430..1476"
                     /db_xref="GeneID:104054292"
ORIGIN      
        1 mgnhsnnhtc ltddsfkynl ygavysvvfi lglitncasl fvfcfrmkmr setaifmtnl
       61 avsdllfvft lpfkifynfn rhwpfgdslc kisgtafltn iygsmlfltc isvdrflaiv
      121 ypfrsrtirt rrnsaivcag vwilvlsggi saslfsttnv sntsttcfeg fskriwktyl
      181 skitifievv gfiiplllnl tcsslvlrtl rkpatlsqig tnkekvlkmi ivhvaifvvc
      241 fvpynsilfl yalvrsqtia ncslerfart mypitlciat mnccfdpfiy yftsesfqks
      301 fniktqikmd slfktetplt ktalpapqde isdqamtngg dptseshf
//
LOCUS       XP_053931482             340 aa            linear   VRT 09-MAR-2023
DEFINITION  putative P2Y purinoceptor 10 [Cuculus canorus].
ACCESSION   XP_053931482
VERSION     XP_053931482.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075507.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..340
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..340
                     /product="putative P2Y purinoceptor 10"
                     /calculated_mol_wt=38956
     Region          34..317
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          36..60
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          69..90
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          106..128
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          150..166
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          196..220
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          243..265
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          285..310
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..340
                     /gene="LOC104054291"
                     /coded_by="XM_054075507.1:2161..3183"
                     /db_xref="GeneID:104054291"
ORIGIN      
        1 mthppytttn vsscpvmmqs nqtcsnhnit fknslyaaty tiifipglla nsaalwvlcr
       61 fiskknkavi fminlavadl ahvlslplri yyyinstwpf grflcllcfy lkylnmyasi
      121 cfltcisiqr yfflyqpfka kdwkrrydma issvvwlfvg laclpfpimr syglakntnt
      181 cfadlqvrqi eskvatvlmt gtaelfgfig pliiilfctw ktkdslqgfq iplqnssekr
      241 kalrmvsmca ivfcvcfapy hinfffymlv kenvitdcfl stitlysqpf clslasldcc
      301 ldpilyffmt sefqdqisrh ssmvirnrlm skesasslke
//
LOCUS       XP_053931483             326 aa            linear   VRT 09-MAR-2023
DEFINITION  probable G-protein coupled receptor 174 [Cuculus canorus].
ACCESSION   XP_053931483
VERSION     XP_053931483.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075508.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..326
                     /product="probable G-protein coupled receptor 174"
                     /calculated_mol_wt=37406
     Region          15..294
                     /region_name="7tmA_GPR174-like"
                     /note="putative purinergic receptor GPR174, member of the
                     class A family of seven-transmembrane G protein-coupled
                     receptors; cd15152"
                     /db_xref="CDD:320280"
     Region          15..41
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320280"
     Region          48..73
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320280"
     Site            order(69,72..73,85..90,92..93,96,140,142..146,173,
                     176..178,180..182,184..185,234,237..238,240..241,244,
                     261..262,264..266,269,272..273)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320280"
     Region          85..115
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320280"
     Region          126..148
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320280"
     Region          173..202
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320280"
     Region          214..244
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320280"
     Region          262..287
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320280"
     CDS             1..326
                     /gene="GPR174"
                     /coded_by="XM_054075508.1:640..1620"
                     /db_xref="GeneID:104054322"
ORIGIN      
        1 mtnsstctet nlklyyaity tfilipglig ntlalwvfyg ymketkravi fminlaiadl
       61 sqvlslplri fyyltgtwef ggglcmlcfy lkyvnmyasi yflvcisvrr ylfvmhpfkf
      121 sdckricdvy isiagwvvvc vgclpfpllr lhqdakntcf vdlpvkevdl pisiammtig
      181 elvgfvtpll iilycswkti lslkennsvs hdlgekkkal kmiltcalvf licfgpyhis
      241 fpldffvkik kienvcvqkv isvfhvvalc laslnscvdp iiyyfttdef rrrlsrqdlq
      301 dsiqlhnlsy arkhsrdvlr kdiidy
//
LOCUS       XP_009553598             326 aa            linear   VRT 09-MAR-2023
DEFINITION  probable G-protein coupled receptor 174 [Cuculus canorus].
ACCESSION   XP_009553598
VERSION     XP_009553598.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009555303.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009553598.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..326
                     /product="probable G-protein coupled receptor 174"
                     /calculated_mol_wt=37406
     Region          15..294
                     /region_name="7tmA_GPR174-like"
                     /note="putative purinergic receptor GPR174, member of the
                     class A family of seven-transmembrane G protein-coupled
                     receptors; cd15152"
                     /db_xref="CDD:320280"
     Region          15..41
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:320280"
     Region          48..73
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:320280"
     Site            order(69,72..73,85..90,92..93,96,140,142..146,173,
                     176..178,180..182,184..185,234,237..238,240..241,244,
                     261..262,264..266,269,272..273)
                     /site_type="other"
                     /note="putative ligand binding pocket [chemical binding]"
                     /db_xref="CDD:320280"
     Region          85..115
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:320280"
     Region          126..148
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:320280"
     Region          173..202
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:320280"
     Region          214..244
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:320280"
     Region          262..287
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:320280"
     CDS             1..326
                     /gene="GPR174"
                     /coded_by="XM_009555303.2:537..1517"
                     /db_xref="GeneID:104054322"
ORIGIN      
        1 mtnsstctet nlklyyaity tfilipglig ntlalwvfyg ymketkravi fminlaiadl
       61 sqvlslplri fyyltgtwef ggglcmlcfy lkyvnmyasi yflvcisvrr ylfvmhpfkf
      121 sdckricdvy isiagwvvvc vgclpfpllr lhqdakntcf vdlpvkevdl pisiammtig
      181 elvgfvtpll iilycswkti lslkennsvs hdlgekkkal kmiltcalvf licfgpyhis
      241 fpldffvkik kienvcvqkv isvfhvvalc laslnscvdp iiyyfttdef rrrlsrqdlq
      301 dsiqlhnlsy arkhsrdvlr kdiidy
//
LOCUS       XP_053931485             252 aa            linear   VRT 09-MAR-2023
DEFINITION  tetraspanin-6 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931485
VERSION     XP_053931485.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075510.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..252
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..252
                     /product="tetraspanin-6 isoform X1"
                     /calculated_mol_wt=27844
     Region          17..240
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          112..216
                     /region_name="TM4SF2_6_like_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), TM4SF2_6_like subfamily.
                     Tetraspanins are trans-membrane proteins with 4
                     trans-membrane segments. Both the N- and C-termini lie on
                     the intracellular side of the membrane. This alignment...;
                     cd03161"
                     /db_xref="CDD:239414"
     Site            order(113,118,122,124..125,128,143,146..147,150..151)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239414"
     CDS             1..252
                     /gene="TSPAN6"
                     /coded_by="XM_054075510.1:71..829"
                     /db_xref="GeneID:104059286"
ORIGIN      
        1 maspsrrlqt kpvitclksv lltytfvfwv sgivllavgv wgrvglavyf slldekatnv
       61 pfvlvgtgtv vvllgtfgcf atcrgstwml klyamflsli flivlvaavv gfvfrheikt
      121 nfesnlnlal rdynvtanqh seavdtiqrt lhccgvqnys dwekteyftq sgiprsccks
      181 qddcseedlk dlskaklkvf vdgcfflvts tmeskmsvva gisfgiacfq ligiilsccl
      241 sqyitnnqye mv
//
LOCUS       XP_053931486             227 aa            linear   VRT 09-MAR-2023
DEFINITION  tetraspanin-6 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931486
VERSION     XP_053931486.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075511.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..227
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..227
                     /product="tetraspanin-6 isoform X2"
                     /calculated_mol_wt=25006
     Region          17..215
                     /region_name="Tetraspanin"
                     /note="Tetraspanin family; pfam00335"
                     /db_xref="CDD:459767"
     Region          93..191
                     /region_name="TM4SF2_6_like_LEL"
                     /note="Tetraspanin, extracellular domain or large
                     extracellular loop (LEL), TM4SF2_6_like subfamily.
                     Tetraspanins are trans-membrane proteins with 4
                     trans-membrane segments. Both the N- and C-termini lie on
                     the intracellular side of the membrane. This alignment...;
                     cd03161"
                     /db_xref="CDD:239414"
     Site            order(93,97,99..100,103,118,121..122,125..126)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:239414"
     CDS             1..227
                     /gene="TSPAN6"
                     /coded_by="XM_054075511.1:71..754"
                     /db_xref="GeneID:104059286"
ORIGIN      
        1 maspsrrlqt kpvitclksv lltytfvfwv sgivllavgv wgrvglavyf slldekatnv
       61 pfvlvgtgtv vvllgtfgcf atcrgstwml kliktnfesn lnlalrdynv tanqhseavd
      121 tiqrtlhccg vqnysdwekt eyftqsgipr sccksqddcs eedlkdlska klkvfvdgcf
      181 flvtstmesk msvvagisfg iacfqligii lscclsqyit nnqyemv
//
LOCUS       XP_053931487            1191 aa            linear   VRT 09-MAR-2023
DEFINITION  fibronectin type-III domain-containing protein 3A-like [Cuculus
            canorus].
ACCESSION   XP_053931487
VERSION     XP_053931487.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075512.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1191
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1191
                     /product="fibronectin type-III domain-containing protein
                     3A-like"
                     /calculated_mol_wt=130066
     Region          269..345
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(351..352,354..355)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          404..>852
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          <807..>1042
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          1039..1135
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1126..1127,1129..1130)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1191
                     /gene="LOC104054293"
                     /coded_by="XM_054075512.1:279..3854"
                     /db_xref="GeneID:104054293"
ORIGIN      
        1 mmadqppple atpilnevpl lphmvngdsi qqvilvqvnp getftitted ghiqciqgpa
       61 hvpmmspngs mppifvppgy vsqvveengv rkvvvlphsa efhpsmhppp ppphvphymh
      121 hhhallphpp hpvyppvpgt gelppqfmhq hppphvfqeq eprshgrtnf iqrderslkm
      181 qehlkkrlkd rqasghinnk lnsppssphk alnssnatlq ngngkgqqga gaplkqkqig
      241 kakgspdaem gesdtesrkc dihlsiskpv vsdiqarsav lswnlpvssq ngeshrhspa
      301 aftfevaisn sgkngkfksv yvgeeltitl pdlrpatdyh arvsatsssi kesiselvsf
      361 ttescepdcp aapklinrtk nslslqwkas ndngskitnf llewdegkng pfkecyyghl
      421 kqykltklsp stkyslrlaa kndigmsgfs etvtyytagi vppapsapal veagvtwlsv
      481 kwsppagvsa ddsltysldm eeggsgygfq pqyngdelsc tlrnlrrsts ykfrlfaynt
      541 egksspsevv eystnpdkpg ppskpavkgk ihshsvkvtw eppkdnggsd iskyflelse
      601 asvgskwdtv ysgsqrehvc dhlkpgtsyr vrvycvskgg esqasdavtv ttsavppgpc
      661 capclagkak pkeitlqwgp psadggsdit eytvemanpd qderiqvyqg papecvvnnl
      721 lpgrtysfwi raankvglgp psdraeicta pgppdqcgka litcksatcv vvswespgcn
      781 gaeigeyrld wgqaegsmhi iymgpcqsye vkgltpatty ycrvqavnaa gvglfgetam
      841 vttpasvpaa vsvlqlleed qietsfplst claiqweepc chgseitgyn ieygekqlvt
      901 vgrntshvle nllpdtlyri riqavngfgv gpfshsikak tkplppdpph lecvvfsyqs
      961 lklkwgegps ralitnptqf nlqmedrfgr fvtvyngpch tykvqrlses ttyyfkiqay
     1021 ndagegefse vyaftttksp paslkapkan qleentyeit weplqpmkgd aivyilqlaa
     1081 grdfdqvykg petsfrltsm qtnceyrvrv cagrqsqdsa gsqelygpys pstvfssqkl
     1141 elappcadlt melaetkktl reerfiaivl lcgfavvail favviqyfvi k
//
LOCUS       XP_053931488            1191 aa            linear   VRT 09-MAR-2023
DEFINITION  fibronectin type-III domain-containing protein 3A-like [Cuculus
            canorus].
ACCESSION   XP_053931488
VERSION     XP_053931488.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075513.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1191
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1191
                     /product="fibronectin type-III domain-containing protein
                     3A-like"
                     /calculated_mol_wt=130066
     Region          269..345
                     /region_name="fn3"
                     /note="Fibronectin type III domain; pfam00041"
                     /db_xref="CDD:394996"
     Site            order(351..352,354..355)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     Region          404..>852
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          <807..>1042
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain [General function
                     prediction only]; COG3401"
                     /db_xref="CDD:442628"
     Region          1039..1135
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(1126..1127,1129..1130)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..1191
                     /gene="LOC104054293"
                     /coded_by="XM_054075513.1:276..3851"
                     /db_xref="GeneID:104054293"
ORIGIN      
        1 mmadqppple atpilnevpl lphmvngdsi qqvilvqvnp getftitted ghiqciqgpa
       61 hvpmmspngs mppifvppgy vsqvveengv rkvvvlphsa efhpsmhppp ppphvphymh
      121 hhhallphpp hpvyppvpgt gelppqfmhq hppphvfqeq eprshgrtnf iqrderslkm
      181 qehlkkrlkd rqasghinnk lnsppssphk alnssnatlq ngngkgqqga gaplkqkqig
      241 kakgspdaem gesdtesrkc dihlsiskpv vsdiqarsav lswnlpvssq ngeshrhspa
      301 aftfevaisn sgkngkfksv yvgeeltitl pdlrpatdyh arvsatsssi kesiselvsf
      361 ttescepdcp aapklinrtk nslslqwkas ndngskitnf llewdegkng pfkecyyghl
      421 kqykltklsp stkyslrlaa kndigmsgfs etvtyytagi vppapsapal veagvtwlsv
      481 kwsppagvsa ddsltysldm eeggsgygfq pqyngdelsc tlrnlrrsts ykfrlfaynt
      541 egksspsevv eystnpdkpg ppskpavkgk ihshsvkvtw eppkdnggsd iskyflelse
      601 asvgskwdtv ysgsqrehvc dhlkpgtsyr vrvycvskgg esqasdavtv ttsavppgpc
      661 capclagkak pkeitlqwgp psadggsdit eytvemanpd qderiqvyqg papecvvnnl
      721 lpgrtysfwi raankvglgp psdraeicta pgppdqcgka litcksatcv vvswespgcn
      781 gaeigeyrld wgqaegsmhi iymgpcqsye vkgltpatty ycrvqavnaa gvglfgetam
      841 vttpasvpaa vsvlqlleed qietsfplst claiqweepc chgseitgyn ieygekqlvt
      901 vgrntshvle nllpdtlyri riqavngfgv gpfshsikak tkplppdpph lecvvfsyqs
      961 lklkwgegps ralitnptqf nlqmedrfgr fvtvyngpch tykvqrlses ttyyfkiqay
     1021 ndagegefse vyaftttksp paslkapkan qleentyeit weplqpmkgd aivyilqlaa
     1081 grdfdqvykg petsfrltsm qtnceyrvrv cagrqsqdsa gsqelygpys pstvfssqkl
     1141 elappcadlt melaetkktl reerfiaivl lcgfavvail favviqyfvi k
//
LOCUS       XP_053931489             817 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein 185 [Cuculus canorus].
ACCESSION   XP_053931489
VERSION     XP_053931489.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075514.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..817
                     /product="zinc finger protein 185"
                     /calculated_mol_wt=90536
     Region          <56..409
                     /region_name="Herpes_BLLF1"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); pfam05109"
                     /db_xref="CDD:282904"
     Region          756..812
                     /region_name="LIM"
                     /note="Zinc-binding domain present in Lin-11, Isl-1,
                     Mec-3; smart00132"
                     /db_xref="CDD:214528"
     Site            order(757,760,780,783,786,789,809,812)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:259829"
     CDS             1..817
                     /gene="ZNF185"
                     /coded_by="XM_054075514.1:242..2695"
                     /db_xref="GeneID:104060505"
ORIGIN      
        1 mmslgvnkgh aipstdedrr riirqmkvrt tlkgdkswih hhnsdsedek ksvplsglas
       61 ggspastpta pqsdrspaak pqsgylirgv ftrtidktss mpdssspnep qkrpavkghs
      121 lnrsssgyrm ttedykklap ynvkqksvdv deedvpftpd ehkkrteaan svlrrtasre
      181 rayvlsaakk sngsptqefp plfakrieie eeegqqrrsp tgsgscrfml dhhstnglrk
      241 nttesswnep ktaavspsst ergsqsqtat astetseqss taaeirnges rqastgksss
      301 etvpqrgdgd kplkekself pwdetasrat vvstngsyse hteadngyyp pksslqsdvp
      361 spterapvhl egtessfkrs ilgfegrsst pesrytspev ppyskpywse atssqdfkee
      421 ntpgerghet tqtsddykpe liqegildst nptekgqdpp dydvrsepar ltehterdps
      481 itrssslpre ssspapetqh pngsdvyldr atpaygeqth ptseshresp gdwrhyepnp
      541 vaasrsnfss kenplsayei qhpmtlytdr qppnnnvltp shripsyvds qafstrrptp
      601 dydgrvydgs ssprnsryds tgarghsefn piagrhdsfp rdttmsisqr shrvpfymdt
      661 lnynstrlls gssericspm atiqpsspaa sgyqpdsntv gkgvlfvkey vnsselsasp
      721 ryssgsfgdl tdlersaysh hsylssaplq wssdpvcsyc sreirdcpki iiehlnicch
      781 eycfrcgich kamgdlldkm fihrdivhcd kcyeklf
//
LOCUS       XP_009564631             228 aa            linear   VRT 09-MAR-2023
DEFINITION  COMM domain-containing protein 5 [Cuculus canorus].
ACCESSION   XP_009564631
VERSION     XP_009564631.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566336.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564631.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..228
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..228
                     /product="COMM domain-containing protein 5"
                     /calculated_mol_wt=24990
     Region          119..228
                     /region_name="Commd5_HCaRG"
                     /note="COMM_Domain containing protein 5, also called HCaRG
                     (hypertension-related, calcium-regulated gene). HCaRG is a
                     nuclear protein that might be involved in cell
                     proliferation; it is negatively regulated by extracellular
                     calcium concentration, and its basal...; cd04753"
                     /db_xref="CDD:240101"
     CDS             1..228
                     /gene="COMMD5"
                     /coded_by="XM_009566336.2:13..699"
                     /db_xref="GeneID:104064046"
ORIGIN      
        1 maaaavtgkg avvvagghgd sggarggflg prvpaeveam aravqdvgrd tfrrllrvtv
       61 nalegkdcke svkliaessn lseeqlafli sgmytllrea lrlplstfkq evfkedlkel
      121 ripedfiadf ssivfgnrrp asegtaliqr srlpsvqdfr wrvdvaists slaralqpsi
      181 lmmmklsdgt ahrfevpvak fqelrynval ilkemndlek rsilkiqd
//
LOCUS       XP_053931490             693 aa            linear   VRT 09-MAR-2023
DEFINITION  ligand of Numb protein X 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931490
VERSION     XP_053931490.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075515.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..693
                     /product="ligand of Numb protein X 2 isoform X1"
                     /calculated_mol_wt=76354
     Region          <52..210
                     /region_name="COG5222"
                     /note="Uncharacterized conserved protein, contains RING
                     Zn-finger [General function prediction only]"
                     /db_xref="CDD:227547"
     Region          52..96
                     /region_name="mRING-HC-C3HC3D_LNX2"
                     /note="Modified RING finger, HC subclass (C3HC3D-type),
                     found in ligand of numb protein X 2 (LNX2); cd16780"
                     /db_xref="CDD:319694"
     Site            order(52,54..55,64,72..75)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:319694"
     Region          228..316
                     /region_name="PDZ1_LNX1_2-like"
                     /note="PDZ domain 1 of human Ligand of Numb protein X 1
                     (LNX1) and LNX2, and related domains; cd06677"
                     /db_xref="CDD:467165"
     Site            order(243..249,262,265,295,299,302..303)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467165"
     Region          337..419
                     /region_name="PDZ2_LNX1_2-like"
                     /note="PDZ domain 2 of human Ligand of Numb protein X 1
                     (LNX1) and LNX2, and related domains; cd06678"
                     /db_xref="CDD:467166"
     Site            order(349..355,366,369,399,403,406..407)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467166"
     Region          478..564
                     /region_name="PDZ3_LNX1_2-like"
                     /note="PDZ domain 3 of human Ligand of Numb protein X 1
                     (LNX1) and LNX2, and related domains; cd06679"
                     /db_xref="CDD:467167"
     Site            order(489..495,509,512,542,546,549..550)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467167"
     Region          603..690
                     /region_name="PDZ4_LNX1_2-like"
                     /note="PDZ domain 4 of human Ligand of Numb protein X 1
                     (LNX1) and LNX2, and related domains; cd06680"
                     /db_xref="CDD:467168"
     Site            order(613..619,634,637,667,671,674..675)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467168"
     CDS             1..693
                     /gene="LOC104063989"
                     /coded_by="XM_054075515.1:16..2097"
                     /db_xref="GeneID:104063989"
ORIGIN      
        1 mplsvggcpi laemadpvae ehasqvsklc secgqfhlll dnhlynfqnd vddelichic
       61 lqpllqpmdt pcghtycfkc lenfmqeynf cpmdrkklsf qqchkssllv rnlldklivc
      121 cpfkaecqqk mqrceleahl qnrcpgfkky kselqwkkns iskgkedpst kvetgmpkdp
      181 evpsggsslv aessaaavvs lgtaepglvn pafeeteedl pqrtslvaet ntieihredp
      241 eeelgmrivg gkdtplgniv vqevlrdsvi avdgriapgd hilevngvni ssvthcqavs
      301 flrhpgpvlh lmvlqekifs nktaqqdsts aasrevihvt likrdraepl giklirktde
      361 agifildlle gglaakngkl srndrvlsin gqdlrqgtpe aaaqiiqste srvnfvvlrq
      421 pglqlsepve esstsnssss ssnrgspvhh rrrldqnhyr rksnyqkdlp qgytshekiv
      481 aikkepkesl gitigggrdn knklpiyvts vqpigclfrd grikrgdvll svngidltql
      541 nyyeavsalk snaashsvvl kaleivslns teqsldikeq gfswsplwit wlglpsylhc
      601 cqdivlskgn letwgfsivg gfeeskgnqp ffiktivpgt pafrdrklrc gdeivavngv
      661 paigmsnsel ipvlkeqrnk itltvvswpg slv
//
LOCUS       XP_009564571             680 aa            linear   VRT 09-MAR-2023
DEFINITION  ligand of Numb protein X 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_009564571
VERSION     XP_009564571.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566276.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009564571.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..680
                     /product="ligand of Numb protein X 2 isoform X2"
                     /calculated_mol_wt=75085
     Region          <39..197
                     /region_name="COG5222"
                     /note="Uncharacterized conserved protein, contains RING
                     Zn-finger [General function prediction only]"
                     /db_xref="CDD:227547"
     Region          39..83
                     /region_name="mRING-HC-C3HC3D_LNX2"
                     /note="Modified RING finger, HC subclass (C3HC3D-type),
                     found in ligand of numb protein X 2 (LNX2); cd16780"
                     /db_xref="CDD:319694"
     Site            order(39,41..42,51,59..62)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:319694"
     Region          215..303
                     /region_name="PDZ1_LNX1_2-like"
                     /note="PDZ domain 1 of human Ligand of Numb protein X 1
                     (LNX1) and LNX2, and related domains; cd06677"
                     /db_xref="CDD:467165"
     Site            order(230..236,249,252,282,286,289..290)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467165"
     Region          324..406
                     /region_name="PDZ2_LNX1_2-like"
                     /note="PDZ domain 2 of human Ligand of Numb protein X 1
                     (LNX1) and LNX2, and related domains; cd06678"
                     /db_xref="CDD:467166"
     Site            order(336..342,353,356,386,390,393..394)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467166"
     Region          465..551
                     /region_name="PDZ3_LNX1_2-like"
                     /note="PDZ domain 3 of human Ligand of Numb protein X 1
                     (LNX1) and LNX2, and related domains; cd06679"
                     /db_xref="CDD:467167"
     Site            order(476..482,496,499,529,533,536..537)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467167"
     Region          590..677
                     /region_name="PDZ4_LNX1_2-like"
                     /note="PDZ domain 4 of human Ligand of Numb protein X 1
                     (LNX1) and LNX2, and related domains; cd06680"
                     /db_xref="CDD:467168"
     Site            order(600..606,621,624,654,658,661..662)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467168"
     CDS             1..680
                     /gene="LOC104063989"
                     /coded_by="XM_009566276.2:165..2207"
                     /db_xref="GeneID:104063989"
ORIGIN      
        1 madpvaeeha sqvsklcsec gqfhllldnh lynfqndvdd elichiclqp llqpmdtpcg
       61 htycfkclen fmqeynfcpm drkklsfqqc hkssllvrnl ldklivccpf kaecqqkmqr
      121 celeahlqnr cpgfkkykse lqwkknsisk gkedpstkve tgmpkdpevp sggsslvaes
      181 saaavvslgt aepglvnpaf eeteedlpqr tslvaetnti eihredpeee lgmrivggkd
      241 tplgnivvqe vlrdsviavd griapgdhil evngvnissv thcqavsflr hpgpvlhlmv
      301 lqekifsnkt aqqdstsaas revihvtlik rdraeplgik lirktdeagi fildlleggl
      361 aakngklsrn drvlsingqd lrqgtpeaaa qiiqstesrv nfvvlrqpgl qlsepveess
      421 tsnssssssn rgspvhhrrr ldqnhyrrks nyqkdlpqgy tshekivaik kepkeslgit
      481 igggrdnknk lpiyvtsvqp igclfrdgri krgdvllsvn gidltqlnyy eavsalksna
      541 ashsvvlkal eivslnsteq sldikeqgfs wsplwitwlg lpsylhccqd ivlskgnlet
      601 wgfsivggfe eskgnqpffi ktivpgtpaf rdrklrcgde ivavngvpai gmsnselipv
      661 lkeqrnkitl tvvswpgslv
//
LOCUS       XP_053931492             680 aa            linear   VRT 09-MAR-2023
DEFINITION  ligand of Numb protein X 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931492
VERSION     XP_053931492.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075517.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..680
                     /product="ligand of Numb protein X 2 isoform X2"
                     /calculated_mol_wt=75085
     Region          <39..197
                     /region_name="COG5222"
                     /note="Uncharacterized conserved protein, contains RING
                     Zn-finger [General function prediction only]"
                     /db_xref="CDD:227547"
     Region          39..83
                     /region_name="mRING-HC-C3HC3D_LNX2"
                     /note="Modified RING finger, HC subclass (C3HC3D-type),
                     found in ligand of numb protein X 2 (LNX2); cd16780"
                     /db_xref="CDD:319694"
     Site            order(39,41..42,51,59..62)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:319694"
     Region          215..303
                     /region_name="PDZ1_LNX1_2-like"
                     /note="PDZ domain 1 of human Ligand of Numb protein X 1
                     (LNX1) and LNX2, and related domains; cd06677"
                     /db_xref="CDD:467165"
     Site            order(230..236,249,252,282,286,289..290)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467165"
     Region          324..406
                     /region_name="PDZ2_LNX1_2-like"
                     /note="PDZ domain 2 of human Ligand of Numb protein X 1
                     (LNX1) and LNX2, and related domains; cd06678"
                     /db_xref="CDD:467166"
     Site            order(336..342,353,356,386,390,393..394)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467166"
     Region          465..551
                     /region_name="PDZ3_LNX1_2-like"
                     /note="PDZ domain 3 of human Ligand of Numb protein X 1
                     (LNX1) and LNX2, and related domains; cd06679"
                     /db_xref="CDD:467167"
     Site            order(476..482,496,499,529,533,536..537)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467167"
     Region          590..677
                     /region_name="PDZ4_LNX1_2-like"
                     /note="PDZ domain 4 of human Ligand of Numb protein X 1
                     (LNX1) and LNX2, and related domains; cd06680"
                     /db_xref="CDD:467168"
     Site            order(600..606,621,624,654,658,661..662)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467168"
     CDS             1..680
                     /gene="LOC104063989"
                     /coded_by="XM_054075517.1:121..2163"
                     /db_xref="GeneID:104063989"
ORIGIN      
        1 madpvaeeha sqvsklcsec gqfhllldnh lynfqndvdd elichiclqp llqpmdtpcg
       61 htycfkclen fmqeynfcpm drkklsfqqc hkssllvrnl ldklivccpf kaecqqkmqr
      121 celeahlqnr cpgfkkykse lqwkknsisk gkedpstkve tgmpkdpevp sggsslvaes
      181 saaavvslgt aepglvnpaf eeteedlpqr tslvaetnti eihredpeee lgmrivggkd
      241 tplgnivvqe vlrdsviavd griapgdhil evngvnissv thcqavsflr hpgpvlhlmv
      301 lqekifsnkt aqqdstsaas revihvtlik rdraeplgik lirktdeagi fildlleggl
      361 aakngklsrn drvlsingqd lrqgtpeaaa qiiqstesrv nfvvlrqpgl qlsepveess
      421 tsnssssssn rgspvhhrrr ldqnhyrrks nyqkdlpqgy tshekivaik kepkeslgit
      481 igggrdnknk lpiyvtsvqp igclfrdgri krgdvllsvn gidltqlnyy eavsalksna
      541 ashsvvlkal eivslnsteq sldikeqgfs wsplwitwlg lpsylhccqd ivlskgnlet
      601 wgfsivggfe eskgnqpffi ktivpgtpaf rdrklrcgde ivavngvpai gmsnselipv
      661 lkeqrnkitl tvvswpgslv
//
LOCUS       XP_053931493             608 aa            linear   VRT 09-MAR-2023
DEFINITION  pre-mRNA 3'-end-processing factor FIP1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053931493
VERSION     XP_053931493.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075518.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..608
                     /product="pre-mRNA 3'-end-processing factor FIP1 isoform
                     X1"
                     /calculated_mol_wt=67522
     Region          73..166
                     /region_name="DUF5404"
                     /note="Family of unknown function (DUF5404); pfam17397"
                     /db_xref="CDD:340112"
     Region          201..242
                     /region_name="Fip1"
                     /note="Fip1 motif; pfam05182"
                     /db_xref="CDD:461573"
     CDS             1..608
                     /gene="LOC104063993"
                     /coded_by="XM_054075518.1:523..2349"
                     /db_xref="GeneID:104063993"
ORIGIN      
        1 mpfpprgvpp lrspvpaqar rlrtagsrrl rllppprpwr rpsalpaapa maaelepppa
       61 aavpgaaple aeedeehwly gddttgkqed gpisghaess htlqdppqen rpvssedrem
      121 sqhalpsged deddsdsdsd dddvkvtign iktgapsymg tpmnlnlktg rgygasasak
      181 lqpkgidlda agninglpvi evdldsfedk pwrkpgadls dyfnygfnee twkaycekqr
      241 rlqlgldpap pistenkitv qqgrtgnaek evennvikte fktdflalvg grmkagpppn
      301 rklggtidvi ggqagtirrv egrrrdkhas eenpiqvlgd hgskpqppqq pqqpsqaqqp
      361 pqqqpfappa gpppppltgp ppphflhppp pvtsvppplh ppglpppgpi pglfppplap
      421 ppalliptld gqpasynnrq pppfgynsad sgfisyppis tshtpwvttv dkgtsgssss
      481 hweysgsrre rerererdrd rdrtpttsey nndderyryy srersydfer dyrrsrdrsr
      541 eredrhrerr hrdkeesskh kssrrkqhes eegeshrrhk hkknkrnkee keasedgaqe
      601 geeqdake
//
LOCUS       XP_053931494             489 aa            linear   VRT 09-MAR-2023
DEFINITION  pre-mRNA 3'-end-processing factor FIP1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053931494
VERSION     XP_053931494.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075519.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..489
                     /product="pre-mRNA 3'-end-processing factor FIP1 isoform
                     X2"
                     /calculated_mol_wt=54628
     Region          82..123
                     /region_name="Fip1"
                     /note="Fip1 motif; pfam05182"
                     /db_xref="CDD:461573"
     CDS             1..489
                     /gene="LOC104063993"
                     /coded_by="XM_054075519.1:253..1722"
                     /db_xref="GeneID:104063993"
ORIGIN      
        1 msqhalpsge ddeddsdsds ddddvkvtig niktgapsym gtpmnlnlkt grgygasasa
       61 klqpkgidld aagninglpv ievdldsfed kpwrkpgadl sdyfnygfne etwkaycekq
      121 rrlqlgldpa ppistenkit vqqgrtgnae kevennvikt efktdflalv ggrmkagppp
      181 nrklggtidv iggqagtirr vegrrrdkha seenpiqvlg dhgskpqppq qpqqpsqaqq
      241 ppqqqpfapp agpppppltg pppphflhpp ppvtsvpppl hppglpppgp ipglfpppla
      301 pppalliptl dgqpasynnr qpppfgynsa dsgfisyppi stshtpwvtt vdkgtsgsss
      361 shweysgsrr ererererdr drdrtpttse ynndderyry ysrersydfe rdyrrsrdrs
      421 reredrhrer rhrdkeessk hkssrrkqhe seegeshrrh khkknkrnke ekeasedgaq
      481 egeeqdake
//
LOCUS       XP_053931495             183 aa            linear   VRT 09-MAR-2023
DEFINITION  cysteine-rich hydrophobic domain-containing protein 1 isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931495
VERSION     XP_053931495.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075520.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..183
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..183
                     /product="cysteine-rich hydrophobic domain-containing
                     protein 1 isoform X1"
                     /calculated_mol_wt=20982
     CDS             1..183
                     /gene="LOC104063994"
                     /coded_by="XM_054075520.1:64..615"
                     /db_xref="GeneID:104063994"
ORIGIN      
        1 msvllpnmad fdtiyeleee edeeeeeese svvrsqelpr prdapdpvav rgaghitvfg
       61 lsnkfdtefp svltgkvape efktsisrvn aclrkslpvn vkwllcgclc ccctlgcslw
      121 pvvclnkrtr rsiqkllewe nnrlyhklgl hwklskrkce tsnmmeyvil ieflpkypif
      181 rpd
//
LOCUS       XP_053931496             156 aa            linear   VRT 09-MAR-2023
DEFINITION  cysteine-rich hydrophobic domain-containing protein 1 isoform X2
            [Cuculus canorus].
ACCESSION   XP_053931496
VERSION     XP_053931496.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075521.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..156
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..156
                     /product="cysteine-rich hydrophobic domain-containing
                     protein 1 isoform X2"
                     /calculated_mol_wt=18122
     CDS             1..156
                     /gene="LOC104063994"
                     /coded_by="XM_054075521.1:68..538"
                     /db_xref="GeneID:104063994"
ORIGIN      
        1 msvllpnmad fdtiyeleee edeeeeeese svvrsqelpr prdapdpvav apeefktsis
       61 rvnaclrksl pvnvkwllcg clcccctlgc slwpvvclnk rtrrsiqkll ewennrlyhk
      121 lglhwklskr kcetsnmmey vilieflpky pifrpd
//
LOCUS       XP_053931497            1693 aa            linear   VRT 09-MAR-2023
DEFINITION  collagen alpha-6(IV) chain isoform X1 [Cuculus canorus].
ACCESSION   XP_053931497
VERSION     XP_053931497.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075522.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1693
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1693
                     /product="collagen alpha-6(IV) chain isoform X1"
                     /calculated_mol_wt=162485
     Region          <48..>324
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <487..>753
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <690..>937
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <899..>1135
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <1221..>1454
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          1470..1575
                     /region_name="C4"
                     /note="C-terminal tandem repeated domain in type 4
                     procollagen; pfam01413"
                     /db_xref="CDD:460201"
     Region          1578..1691
                     /region_name="C4"
                     /note="C-terminal tandem repeated domain in type 4
                     procollagen; pfam01413"
                     /db_xref="CDD:460201"
     CDS             1..1693
                     /gene="COL4A6"
                     /coded_by="XM_054075522.1:388..5469"
                     /db_xref="GeneID:104058496"
ORIGIN      
        1 mgragsllll lllclgaela saggkktysg pcggrdcsag ckcfpekgsr grpgpvglqg
       61 pigapgitgp eglpgpkger gavghpgpag qkgekgpmgv pgfqgingip ghpgqagprg
      121 lpgldgcngt igspgvsgsd gfpglpglpg rpgpkglkge pvfaqgslkg mkgenglpgl
      181 dgisgpkgfp gpigpagpig lpglqgpmgp pgppgpkgnm glgfqgekge kgdvglpgpp
      241 gpppstgile fmgfpkgkqg ekgepgpqgf pgekglpglp glggvgekge kgvpglpggr
      301 glvgldgsdg ipgrkghpgv pgypgldgve gmkgelgdig ppgppividr egvvisgapg
      361 dpgnpgmpgp pgdegisglp gltgapgfpg lerdgmgpgg spgipgikge vgepgratig
      421 lpgtagrggl pglpgapglp gsprpsfppd tvlagrigap gepgqrgrpg algpkgfkge
      481 agdcacdggv traglkgiag pqgpsgspgm pglkgivgdp gtvgapglrg pqassgqqgl
      541 pgikgekgds syatikgarg drgataprgp sgipgtpgrd glpglpgppg ppgdgalgfp
      601 gekglpglpg skghrgepgs pgvgypgpsg vrgppgdpgm dgflgqaglp gppgitlpci
      661 vpgaygppgt pgfpglpgpk gskgfpgipg qrglhgskgq pgspgiiglq gepgfpgprg
      721 eqgsrglpgl dgtdglpgkm gasglagtkg apgdvfgaes galgvrgrpg lpgdkgltgd
      781 pgfpgpkgld grpgllgikg eqgnpgysgv pglrgppgpg gpfgikgkpg plglaglpga
      841 pglpgvkglp gdvgpqgpag mkgfpgldga pgspgergfl gppgpfgedg hpgfsgpkge
      901 kgssgllgfp gmpglpgvpg vngfkgtpgt aggkgspgvv glqgqkgdrg dvgppglpgf
      961 glleqalqfk gdkgdpglag lggfpgprgd kgipgssgqp glpgpvgsas kekglrgdpg
     1021 fpglsgqhgl pgqkgthgii gfpgmpgerg sdgitgtvgf pgpiglpgpk gdqgesvgvp
     1081 giagakgerg npgfpgergr egpkgepgyp gntgvnglkg spgdlgqegp agtpgnaglr
     1141 gipgppgppg qpgsvgfpga rgtagpkgfh gfpglnglng lpgtkgspgt pglseaglkg
     1201 pagppgpkge egspglsrga lgfpgpkgss gdmgppgpig lpglpgtpga slpsdipgrp
     1261 gdaghpgtdg ssglpgspgp rgppgpasdq gdtgnpglpg vlglrgikgd vgrtgpvglp
     1321 gasgfkgvrg epglmgmpgk dgpagdpghp glkgevgrrg lpgrqgapgi tpqpeeltap
     1381 aglpglpgvd gvpgfdgdpg lqgaagnpgp kglpgrsglk grdgfagspg ivgdpgpsga
     1441 pgpqgfegva gkpgshglpg mpgrsvgvgy tlvkhsqseq ippcpigmnk lwdgysllyv
     1501 egqekshnqd lgfagsclpr fstmpfiycn inevcyyasr ndksywlstt apipmmpvds
     1561 tqipqyisrc svceapsqav avhsqditip qcplgwrslw igysflmhta agaegggqsl
     1621 vspgscledf ratpfiecng argtchyfan kysfwlttve qsqqfvsapp setlkagqlr
     1681 trvsrcqvcm knl
//
LOCUS       XP_053931498            1525 aa            linear   VRT 09-MAR-2023
DEFINITION  collagen alpha-6(IV) chain isoform X2 [Cuculus canorus].
ACCESSION   XP_053931498
VERSION     XP_053931498.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075523.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1525
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1525
                     /product="collagen alpha-6(IV) chain isoform X2"
                     /calculated_mol_wt=146941
     Region          <48..>324
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <487..>753
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <690..>937
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <902..>1022
                     /region_name="PRK14959"
                     /note="DNA polymerase III subunits gamma and tau;
                     Provisional"
                     /db_xref="CDD:184923"
     Region          <1027..>1276
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          1302..1407
                     /region_name="C4"
                     /note="C-terminal tandem repeated domain in type 4
                     procollagen; pfam01413"
                     /db_xref="CDD:460201"
     Region          1410..1523
                     /region_name="C4"
                     /note="C-terminal tandem repeated domain in type 4
                     procollagen; pfam01413"
                     /db_xref="CDD:460201"
     CDS             1..1525
                     /gene="COL4A6"
                     /coded_by="XM_054075523.1:384..4961"
                     /db_xref="GeneID:104058496"
ORIGIN      
        1 mgragsllll lllclgaela saggkktysg pcggrdcsag ckcfpekgsr grpgpvglqg
       61 pigapgitgp eglpgpkger gavghpgpag qkgekgpmgv pgfqgingip ghpgqagprg
      121 lpgldgcngt igspgvsgsd gfpglpglpg rpgpkglkge pvfaqgslkg mkgenglpgl
      181 dgisgpkgfp gpigpagpig lpglqgpmgp pgppgpkgnm glgfqgekge kgdvglpgpp
      241 gpppstgile fmgfpkgkqg ekgepgpqgf pgekglpglp glggvgekge kgvpglpggr
      301 glvgldgsdg ipgrkghpgv pgypgldgve gmkgelgdig ppgppividr egvvisgapg
      361 dpgnpgmpgp pgdegisglp gltgapgfpg lerdgmgpgg spgipgikge vgepgratig
      421 lpgtagrggl pglpgapglp gsprpsfppd tvlagrigap gepgqrgrpg algpkgfkge
      481 agdcacdggv traglkgiag pqgpsgspgm pglkgivgdp gtvgapglrg pqassgqqgl
      541 pgikgekgds syatikgarg drgataprgp sgipgtpgrd glpglpgppg ppgdgalgfp
      601 gekglpglpg skghrgepgs pgvgypgpsg vrgppgdpgm dgflgqaglp gppgitlpci
      661 vpgaygppgt pgfpglpgpk gskgfpgipg qrglhgskgq pgspgiiglq gepgfpgprg
      721 eqgsrglpgl dgtdglpgkm gasglagtkg apgdvfgaes galgvrgrpg lpgdkgltgd
      781 pgfpgpkgld grpgllgikg eqgnpgysgv pglrgppgpg gpfgikgkpg plglaglpga
      841 pglpgvkglp gdvgpqgpag mkgfpgldga pgspgergfl gppgpfgedg hpgfsgpkge
      901 kgssgllgfp gmpglpgvpg vngfkgtpgt aggkgspgvv glqgqkgdrg dvgppglpgf
      961 glleqalqfk gdkgdpglag lggfpgprgd kgipgssgqp glpgpvgsas kekglrgdpg
     1021 fpglsgqhgl pgqkgthgii gfpgmpgerg sdgitgtvgf pgpiglpgpk gdqgesvgvp
     1081 giagakgerg npgfpgergr egpkgepgyp gntgvnglkg spgdlgqegp agtpgnaglr
     1141 gipgppgppg qpgsvgfpga rgtagpkgfh gfpglnglng lpgtkgspgt pglpgrqgap
     1201 gitpqpeelt apaglpglpg vdgvpgfdgd pglqgaagnp gpkglpgrsg lkgrdgfags
     1261 pgivgdpgps gapgpqgfeg vagkpgshgl pgmpgrsvgv gytlvkhsqs eqippcpigm
     1321 nklwdgysll yvegqekshn qdlgfagscl prfstmpfiy cninevcyya srndksywls
     1381 ttapipmmpv dstqipqyis rcsvceapsq avavhsqdit ipqcplgwrs lwigysflmh
     1441 taagaegggq slvspgscle dfratpfiec ngargtchyf ankysfwltt veqsqqfvsa
     1501 ppsetlkagq lrtrvsrcqv cmknl
//
LOCUS       XP_053931499            1690 aa            linear   VRT 09-MAR-2023
DEFINITION  collagen alpha-5(IV) chain isoform X1 [Cuculus canorus].
ACCESSION   XP_053931499
VERSION     XP_053931499.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075524.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1690
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1690
                     /product="collagen alpha-5(IV) chain isoform X1"
                     /calculated_mol_wt=161515
     Region          <85..>335
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <294..>419
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <964..>1188
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <1307..>1441
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          1467..1574
                     /region_name="C4"
                     /note="C-terminal tandem repeated domain in type 4
                     procollagen; pfam01413"
                     /db_xref="CDD:460201"
     Region          1577..1688
                     /region_name="C4"
                     /note="C-terminal tandem repeated domain in type 4
                     procollagen; pfam01413"
                     /db_xref="CDD:460201"
     CDS             1..1690
                     /gene="COL4A5"
                     /coded_by="XM_054075524.1:139..5211"
                     /db_xref="GeneID:104058383"
ORIGIN      
        1 meprgrsrsp aagclvavll lgcwgpreaa aaachgctsl skcdcsgvkg ekgergfpgl
       61 egqlglpgfp gpegppgprg pkgddglpgp igpkgirgpp glpgfpgtpg lpglpgqdgp
      121 pgpqgipgcn gtkgergfpg spgfpglqgp pgppglpgmk gepgeiitsl lpgqkgdpgf
      181 pglpgipgpp gsmgvpgpig ppgppgltgp pgppglpgpk gnmglnfqgp kgekgeqglq
      241 gppgppgqig eqkrpndief qkgdqgipgd pgppglpgpq gppglpggvk gekgeqgepg
      301 krgkpgkdge pgqpgrdglp ggpgingapg rdgekgekgd igppgppgiv isrpgidaav
      361 gpkgskglpg lpgakgergf sgrpgppglp gspgittvgp pgppglpger gqkgdpglpg
      421 isipgqpgld gprgppgppg ppgppapsvp pgeglceqgp pgppgipgqq gftgergqkg
      481 dqgdtcfnci gtgitgppge rgppglpgsp gspgfpgpkg ekglpgltgl vgppgfpgpp
      541 gapgrpgpkg dpgdvltspr mkgekgdpgf pgppglpgid gtpgrdglpg lpgpkgepgs
      601 vafkgemgip gdpgipglpg dkglpgppgf gpqgppgekg iqgvsgrpgp pgvpgpkgdp
      661 gqtitepgvp gppgppgrng dpglpgdpgq pgqrglsgip gakgepgipg iglpgppgpk
      721 gfpgtpgppg apgtpgrpgl dgppgppgfp gqkgergfgv pgppgppgpp gtkglqgpkg
      781 dsgfpgspgl pgragfdgtp gpkgdpgpsg ppglpgppgi pgiggqgppg spgppgpvgp
      841 pglqgvpgek gdpgppgfdv pgppgdqgap gypgppglpg pqgspgppgr dgipgfpgak
      901 gemgvmgapg ppgppgtpgr nglpglkgnt glpgpqgppg pvgqkgvkge aglpgppgkv
      961 dpkqlgakge kgepgvpgip glpgqkgyqg ipgdpgppgl sgppgapglp gikgetglpg
     1021 qpgptgppgl kgamgemglp gppgikgsqg itgrpgqpgp agfpglkgek gdpglpsvgi
     1081 pglpgpkgdl glpgypgspg pkgvagnpgl pgfpgspgak gepglpgfpg tpgipgpkgi
     1141 egppgnpglp gppgpvgdig rpgppgpsge kgqpgrdgip gpagqkgepg lpgfgrpgpp
     1201 glpglpgqkg elglpgppgp pglpglkgep gfqgfpglqg ppgppglpgp plegpkgspg
     1261 ppgvpgrpgp pgpegprgpp gsgglkgekg npgqpgppgl pgqkgdqgpp grqgdpgrpg
     1321 lngmkgdpgv pgvpgfpgmk gptgpagpag ltgsqglpgp pgppglpgti grsivvkgdp
     1381 gppgspgqpg skgppglpgp qglpgpiglp gdpgrdglpg fdgpagrkge rglpgqpgsr
     1441 giqgppgpdg lqgppgppgs asvahgflit rhsqtrdtpl cpqgtsriyd gfsllyvqgn
     1501 erahgqdlgt agsclrrfst mpfmfcninn vcnfasrndy sywlstpepm pmsmepltgq
     1561 siqpfisrcv vceapamvia vhsqtiqips cpqgwdslwi gysfmmhtsa gaegsgqala
     1621 spgscleefr sapfiechgr gtcnyyansy sfwlatvevs emfskpqset lkagdlrtri
     1681 srcqvcmkkt
//
LOCUS       XP_053931501            1284 aa            linear   VRT 09-MAR-2023
DEFINITION  collagen alpha-5(IV) chain isoform X2 [Cuculus canorus].
ACCESSION   XP_053931501
VERSION     XP_053931501.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075526.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1284
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1284
                     /product="collagen alpha-5(IV) chain isoform X2"
                     /calculated_mol_wt=120285
     Region          <112..>335
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <294..>419
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          <964..>1188
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     CDS             1..1284
                     /gene="COL4A5"
                     /coded_by="XM_054075526.1:141..3995"
                     /db_xref="GeneID:104058383"
ORIGIN      
        1 meprgrsrsp aagclvavll lgcwgpreaa aaachgctsl skcdcsgvkg ekgergfpgl
       61 egqlglpgfp gpegppgprg pkgddglpgp igpkgirgpp glpgfpgtpg lpglpgqdgp
      121 pgpqgipgcn gtkgergfpg spgfpglqgp pgppglpgmk gepgeiitsl lpgqkgdpgf
      181 pglpgipgpp gsmgvpgpig ppgppgltgp pgppglpgpk gnmglnfqgp kgekgeqglq
      241 gppgppgqig eqkrpndief qkgdqgipgd pgppglpgpq gppglpggvk gekgeqgepg
      301 krgkpgkdge pgqpgrdglp ggpgingapg rdgekgekgd igppgppgiv isrpgidaav
      361 gpkgskglpg lpgakgergf sgrpgppglp gspgittvgp pgppglpger gqkgdpglpg
      421 isipgqpgld gprgppgppg ppgppapsvp pgeglceqgp pgppgipgqq gftgergqkg
      481 dqgdtcfnci gtgitgppge rgppglpgsp gspgfpgpkg ekglpgltgl vgppgfpgpp
      541 gapgrpgpkg dpgdvltspr mkgekgdpgf pgppglpgid gtpgrdglpg lpgpkgepgs
      601 vafkgemgip gdpgipglpg dkglpgppgf gpqgppgekg iqgvsgrpgp pgvpgpkgdp
      661 gqtitepgvp gppgppgrng dpglpgdpgq pgqrglsgip gakgepgipg iglpgppgpk
      721 gfpgtpgppg apgtpgrpgl dgppgppgfp gqkgergfgv pgppgppgpp gtkglqgpkg
      781 dsgfpgspgl pgragfdgtp gpkgdpgpsg ppglpgppgi pgiggqgppg spgppgpvgp
      841 pglqgvpgek gdpgppgfdv pgppgdqgap gypgppglpg pqgspgppgr dgipgfpgak
      901 gemgvmgapg ppgppgtpgr nglpglkgnt glpgpqgppg pvgqkgvkge aglpgppgkv
      961 dpkqlgakge kgepgvpgip glpgqkgyqg ipgdpgppgl sgppgapglp gikgetglpg
     1021 qpgptgppgl kgamgemglp gppgikgsqg itgrpgqpgp agfpglkgek gdpglpsvgi
     1081 pglpgpkgdl glpgypgspg pkgvagnpgl pgfpgspgak gepglpgfpg tpgipgpkgi
     1141 egppgnpglp gppgpvgdig rpgppgpsge kgqpgrdgip gpagqkgepg lpgfgrpgpp
     1201 glpglpgqkg elglpgppgp pglpglkgep gfqgfpglqg ppgppglpgp plegpkgspg
     1261 ppgvpgrpvl srdqqmssrt kkqk
//
LOCUS       XP_053931502            1170 aa            linear   VRT 09-MAR-2023
DEFINITION  protein ELYS-like [Cuculus canorus].
ACCESSION   XP_053931502
VERSION     XP_053931502.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075527.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1170
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1170
                     /product="protein ELYS-like"
                     /calculated_mol_wt=132391
     Region          1..421
                     /region_name="ELYS-bb"
                     /note="beta-propeller of ELYS nucleoporin; pfam16687"
                     /db_xref="CDD:465233"
     Region          609..819
                     /region_name="ELYS"
                     /note="Nuclear pore complex assembly; pfam13934"
                     /db_xref="CDD:464050"
     CDS             1..1170
                     /gene="LOC128853134"
                     /coded_by="XM_054075527.1:122..3634"
                     /db_xref="GeneID:128853134"
ORIGIN      
        1 mnsvtgerls aynfsglhgq pptvrvvkef swwnrpalli gvgnvlclyh lgrsrvikav
       61 alpgrvvaie piandggvda strylhpslq wfsgvaavat nvghvllvdl clhdffwsek
      121 eietldlesv taapaevpri retvmgggrh lcfrlqnssr savstlyfis rtnqlvvgfc
      181 ngtlslwnmg tltrehnsql nggripvsgv tfqependpg nscylwavqs apkrgggvls
      241 frllqltfgk rrrvasgqvm yeglarceer fgvdlrggns nsnmkllgcq tiekfsdrld
      301 ggnsingvms pyasvsiftw qvctsgqknp lihlsvfdin gwldaempas vrpeslqdcp
      361 yfalwsldtv tspapldlvl dimvdqtslt wrdypsylap gqypcassys fgvmcllsfg
      421 vcrvtctssr eeeeqleall staartgsle llteyikrwt seeqpssaen iqfvrecawn
      481 rvlhatdefn qlcvplfdgp fvdqktiqsl ydcqfylcnl stilnclpre eqdlseedlt
      541 nkqvlaghqs lyaqvvtwfc rcgllpqgld agqrssrpfy nypllqrcct aqrqrltrls
      601 rgkwdlaglm idrmvsdlge rvqnlwctdk qktgkyppps lqallqlyll dgieeidkhk
      661 itmyllldig wavpdnrerl lhsfcaafai pkgfvqlvqg fwlldhndye nslvllchpa
      721 tarsaswlrq raiqslmcqg qhrraltyir mtrplitssr eaqlylsvfl snrcmadawn
      781 llqqrssddn reelllhmfk tclemglvkg flelpftdte lecleeiles sdlikdheff
      841 panhpkpvnn taavrvnksa kvtltdfwkk qmlkvlpfpr vpswcsqllk rktqqvlpfl
      901 rvanwcsqll kkktqqvfpf prvanwcsql lkkktqqvlq fprvaswysq llkkktqqvl
      961 qfprvaswcs kllrllpgrl qgkgeftkqi dllvhtarhr glsvlanddl elvyvtnalr
     1021 ntlqnlrqkq tslkaalsll llpkglednr grqdidlllr nerqslsaeq qedqytgthy
     1081 lpksfsfvtk rciavtkscs tcqleepnsr lwmkirlmkr mrilsspgak klkgqcnscr
     1141 ckightaicq pqkadcedgf kdceecnnak
//
LOCUS       XP_009558173            1133 aa            linear   VRT 09-MAR-2023
DEFINITION  insulin receptor substrate 4 [Cuculus canorus].
ACCESSION   XP_009558173
VERSION     XP_009558173.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009559878.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009558173.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1133
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1133
                     /product="insulin receptor substrate 4"
                     /calculated_mol_wt=122644
     Region          83..199
                     /region_name="PH_IRS"
                     /note="Insulin receptor substrate (IRS) pleckstrin
                     homology (PH) domain; cd01257"
                     /db_xref="CDD:269959"
     Region          230..333
                     /region_name="PTB_IRS"
                     /note="Insulin receptor substrate phosphotyrosine-binding
                     domain (PTBi); cd01204"
                     /db_xref="CDD:269915"
     Site            order(239,241,247)
                     /site_type="other"
                     /note="phosphoinositide binding site [chemical binding]"
                     /db_xref="CDD:269915"
     Site            order(278..288,292,296..297,307,317,320,324,327..328,
                     330..331)
                     /site_type="other"
                     /note="phosphopeptide binding site [polypeptide binding]"
                     /db_xref="CDD:269915"
     CDS             1..1133
                     /gene="IRS4"
                     /coded_by="XM_009559878.2:188..3589"
                     /db_xref="GeneID:104058372"
ORIGIN      
        1 masgmngaag ggeeepgprg agggaapqpe pgvvagegda geggrcpspq phhlllllrr
       61 spsaslcpep rggqprtapp pgddvrrcgy lrkqkhghkr yfvlraesrl aparleyyds
      121 ekkfksslra aggaaslcpp pkrviplyqc ftvsrradak hkhiialytk deyfamlaes
      181 eaeqeawyqa iselmsqskr gfleqedhtd qqvdeddehy gaalrpgtvf kevwqvnvkp
      241 kglgqtknlt gvyrlclssk aihlvklnse vpsvhlqlmn irrcghsenf ffievgrsas
      301 igpgelwmqv ddsvvaqnmh etfletmkal kafaefrprs ksqssgggsg tnpisfittr
      361 rhlgnlppsq tglqrrsrte nvaggtpptt kssnsyrfrt ssegegtmtr pfrsvtgsli
      421 hlntarmnlg rqegsgryvr aafsssyhtr saslpvshfp sttspisvss ssghgsasdm
      481 ltrpssssvc gspsdggfvs sdeygsspgd fryfrvrsnt pdslgntppi reenclseym
      541 smskqqaddg srddymeaek cfrkrtyslt kptsvavqqk mtqttallde dsagnhgrll
      601 ysetpklkdn hdseyndanl dsvcnqsrsk arddgympmm pgvasslssn sdylpmtpks
      661 msvpkqinns wspsqvdsrg ymmmfpkass spvrspltgf vskgsnekiv nneymdmspg
      721 nstpkhpges nyihtssvsk gfssyfslpr sfkalsgqng dhseyvpmss pgkllyggpe
      781 nvkginseal angisklpvv kgsdeglvqn raarptrlpl gtrgsntipr mydrtvppep
      841 aspgeyinid fnekvsntpy slsaegspss lgsssdhrqs plsdymsvdl dvqspktake
      901 lsnsltdisi yasssiprnq snpdyarlsf gtacvstasn rtddytemtf nmaatpprpf
      961 aaesddgvki dspssivnrl civdryagss gfsvpssdpp mgpkviradp qgrrrhsset
     1021 fssagtvtts ssfftdsskr hssasfdnvw lkpdenisdg qeskmsrdts tgfqnglnyi
     1081 alnlrddpis ceasttaptc hlqngtsgld sgayvsidfs rsdglkcnaa rkd
//
LOCUS       XP_053931503             561 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853135 [Cuculus canorus].
ACCESSION   XP_053931503
VERSION     XP_053931503.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075528.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..561
                     /product="uncharacterized protein LOC128853135"
                     /calculated_mol_wt=64617
     Region          1..210
                     /region_name="ELYS"
                     /note="Nuclear pore complex assembly; pfam13934"
                     /db_xref="CDD:464050"
     CDS             1..561
                     /gene="LOC128853135"
                     /coded_by="XM_054075528.1:254..1939"
                     /db_xref="GeneID:128853135"
ORIGIN      
        1 midrmvsdlg ervqnlwctd kqktgkyppp slqallqlyl ldgieeidkh kitmyllldi
       61 gwavpdnrer llhsfcaafa ipkgfvqlvq gfwlldhndy enslvllchp atarsaswlr
      121 qraiqslmcq gqhrraltyi rmtrplitss reaqlylsvf lsnrcmadaw nllqqrssdd
      181 nreelllhmf ktclemglvk gflelpftdt elecleeile ssdlikdhef fpanhpkpvn
      241 ntaavrvnks akvtltdfwk kqmlkvlpfp rvpswcsqll krktqqvlpf lrvanwcsql
      301 lkkktqqvfp fprvanwcsq llkkktqqvl qfprvaswys qllkkktqqv lqfprvaswc
      361 skllrllpgr lqgkgeftkq idllvhtarh rglsvlandd lelvyvtnal rntlqnlrqk
      421 qtslkaalsl lllpkgledn rgrqdidlll rnerqslsae qqedqytgth ylpksfsfvt
      481 krciavtksc stcqleepns rlwmkirlmk rmrilsspga kklkgqcnsc rckightaic
      541 qpqkadcedg fkdceecnna k
//
LOCUS       XP_053931504             386 aa            linear   VRT 09-MAR-2023
DEFINITION  collagen alpha-6(IV) chain-like [Cuculus canorus].
ACCESSION   XP_053931504
VERSION     XP_053931504.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075529.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..386
                     /product="collagen alpha-6(IV) chain-like"
                     /calculated_mol_wt=38757
     Region          <29..>232
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          241..343
                     /region_name="C4"
                     /note="C-terminal tandem repeated domain in type 4
                     procollagen; pfam01413"
                     /db_xref="CDD:460201"
     Region          346..>376
                     /region_name="C4"
                     /note="C-terminal tandem repeated domain in type 4
                     procollagen; cl02467"
                     /db_xref="CDD:470585"
     CDS             1..386
                     /gene="LOC128853136"
                     /coded_by="XM_054075529.1:119..1279"
                     /db_xref="GeneID:128853136"
ORIGIN      
        1 mgppgpiglp glpgtpgasl psdipgrpgd aghpgtdgss glpgspgprg ppgpasdqgd
       61 tgnpglpgvl glrgikgdvg rtgpvglpga sgfkgvrgep glmgmpgkdg pagdpghpgl
      121 kgemgrrglp grqgapgitp qpeeltapag lpglpgvdgv pgfdgdpglq gaagnpgpkg
      181 lpgrsglkgr dgfagspgiv gdpgpsgapg pqgfegvagk pgshglpgmp grsvgvgyts
      241 vkhsqseqip pcpigmnklw dgysllyveg qekshnqdlg fagsclprfs tmpfiyynin
      301 evcyyasrnd ksswlsttap ipmmpvdstq ipqyisrcsv ceapsqavav hsqditipqc
      361 plgwrslwig csflmvrilq lmqrqp
//
LOCUS       XP_053931505             381 aa            linear   VRT 09-MAR-2023
DEFINITION  collagen alpha-6(IV) chain-like [Cuculus canorus].
ACCESSION   XP_053931505
VERSION     XP_053931505.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075530.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..381
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..381
                     /product="collagen alpha-6(IV) chain-like"
                     /calculated_mol_wt=38058
     Region          <29..>232
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          241..343
                     /region_name="C4"
                     /note="C-terminal tandem repeated domain in type 4
                     procollagen; pfam01413"
                     /db_xref="CDD:460201"
     Region          346..>375
                     /region_name="C4"
                     /note="C-terminal tandem repeated domain in type 4
                     procollagen; cl02467"
                     /db_xref="CDD:470585"
     CDS             1..381
                     /gene="LOC128853137"
                     /coded_by="XM_054075530.1:119..1264"
                     /db_xref="GeneID:128853137"
ORIGIN      
        1 mgppgpiglp glpgtpgasl psdipgrpgd aghpgtdgss glpgspgprg ppgpasdqgd
       61 tgnpglpgil glrgikgdvg rtgpvglpga sgfkgvrgep glmgmpgkdg pagdpghpgl
      121 kgemgrrglp grqgapgitp qpeeltapag lpglpgvdgv pgfdgdpglq gaagnpgpkg
      181 lpgrsglkgr dgfagspgiv gdpgpsgapg pqgfegvagk pgshglpgmp grsvgvgyts
      241 vkhrqseqip pcpigmnklw dgysllyveg qekshnqdlg fagsclprfs tmpfiycnin
      301 evcyyasrnd ksswlsttas ipmmpvdstq ipqyisrcsv ceapsqavav hsqditipqc
      361 plgwrslwig ysflmsaecn s
//
LOCUS       XP_053931507             320 aa            linear   VRT 09-MAR-2023
DEFINITION  cysteine protease ATG4A [Cuculus canorus].
ACCESSION   XP_053931507
VERSION     XP_053931507.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075532.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..320
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..320
                     /product="cysteine protease ATG4A"
                     /calculated_mol_wt=36475
     Region          1..257
                     /region_name="Peptidase_C54"
                     /note="Peptidase family C54; pfam03416"
                     /db_xref="CDD:460915"
     CDS             1..320
                     /gene="LOC104066511"
                     /coded_by="XM_054075532.1:116..1078"
                     /db_xref="GeneID:104066511"
ORIGIN      
        1 mlrcgqmmla qalicrhlgr dwqwekhkkq peeyhrilrc fldrkdccys ihqmaqmgvg
       61 egksigewfg pntvaqvlkk lalfdewnsl avyvsmdntv viedikkmcw sppqssgaah
      121 raarlhrsal grnkntagfc tgwkplllii plrlginhin pvyidafkec fkmpqslgal
      181 ggkpnnayyf igflgneliy ldphttqsfv dseengtvdd esfhcqqaph rmkimsldps
      241 valgffckee cdfdnwctlv qkeilkqqsl rmfelvqkhp phwppfippa kpevtttgae
      301 liestdklfe veeefeilsv
//
LOCUS       XP_053931508             284 aa            linear   VRT 09-MAR-2023
DEFINITION  collagen alpha-6(IV) chain-like isoform X1 [Cuculus canorus].
ACCESSION   XP_053931508
VERSION     XP_053931508.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075533.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..284
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..284
                     /product="collagen alpha-6(IV) chain-like isoform X1"
                     /calculated_mol_wt=29376
     Region          <2..>130
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          136..241
                     /region_name="C4"
                     /note="C-terminal tandem repeated domain in type 4
                     procollagen; pfam01413"
                     /db_xref="CDD:460201"
     Region          244..>274
                     /region_name="C4"
                     /note="C-terminal tandem repeated domain in type 4
                     procollagen; cl02467"
                     /db_xref="CDD:470585"
     CDS             1..284
                     /gene="LOC128853138"
                     /coded_by="XM_054075533.1:87..941"
                     /db_xref="GeneID:128853138"
ORIGIN      
        1 mgmpgkdgpa gdpghpglkg evgrrglpgr qgapgitpqp eeltapaglp glpgvdgvpg
       61 fdgdpglqga agnpgpkglp grsglkgrdg fagspgivgd pgpsgapgpq gfegvagkpg
      121 shglpgmpgr svgvgytlvk hsqseqippc pigmnklwdg ysllyvegqe kshnqdlgfa
      181 gsclprfstm pfiycninev cyyasrndks swlsttapip mmpvdstqip qyisrcsvce
      241 apsqavavhs qditipqcpl gwrslwigys flmvrilqlm qrqp
//
LOCUS       XP_053931509             279 aa            linear   VRT 09-MAR-2023
DEFINITION  collagen alpha-6(IV) chain-like isoform X2 [Cuculus canorus].
ACCESSION   XP_053931509
VERSION     XP_053931509.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075534.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..279
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..279
                     /product="collagen alpha-6(IV) chain-like isoform X2"
                     /calculated_mol_wt=28603
     Region          <2..>130
                     /region_name="gly_rich_SclB"
                     /note="LPXTG-anchored collagen-like adhesin Scl2/SclB;
                     NF038329"
                     /db_xref="CDD:468478"
     Region          136..241
                     /region_name="C4"
                     /note="C-terminal tandem repeated domain in type 4
                     procollagen; pfam01413"
                     /db_xref="CDD:460201"
     Region          244..>273
                     /region_name="C4"
                     /note="C-terminal tandem repeated domain in type 4
                     procollagen; cl02467"
                     /db_xref="CDD:470585"
     CDS             1..279
                     /gene="LOC128853138"
                     /coded_by="XM_054075534.1:86..925"
                     /db_xref="GeneID:128853138"
ORIGIN      
        1 mgmpgkdgpa gdpghpglkg evgrrglpgr qgapgitpqp eeltapaglp glpgvdgvpg
       61 fdgdpglqga agnpgpkglp grsglkgrdg fagspgivgd pgpsgapgpq gfegvagkpg
      121 shglpgmpgr svgvgytlvk hsqseqippc pigmnklwdg ysllyvegqe kshnqdlgfa
      181 gsclprfstm pfiycninev cyyasrndks swlsttapip mmpvdstqip qyisrcsvce
      241 apsqavavhs qditipqcpl gwrslwigys flmsaecns
//
LOCUS       XP_053931510             117 aa            linear   VRT 09-MAR-2023
DEFINITION  cysteine protease ATG4A-like [Cuculus canorus].
ACCESSION   XP_053931510
VERSION     XP_053931510.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075535.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..117
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..117
                     /product="cysteine protease ATG4A-like"
                     /calculated_mol_wt=12549
     Region          <1..>25
                     /region_name="Peptidase_C54"
                     /note="Peptidase family C54; pfam03416"
                     /db_xref="CDD:460915"
     CDS             1..117
                     /gene="LOC128853139"
                     /coded_by="XM_054075535.1:370..723"
                     /db_xref="GeneID:128853139"
ORIGIN      
        1 maqmgvgegk sigewfgpnt vaqvlnvgme qnttcapeas ivlpralksl licavpetlc
       61 qegpvqergw khngararht sgctqktqcl dsfggklipg seawlrcfll lwleapr
//
LOCUS       XP_053931511             117 aa            linear   VRT 09-MAR-2023
DEFINITION  cysteine protease ATG4A-like isoform X1 [Cuculus canorus].
ACCESSION   XP_053931511
VERSION     XP_053931511.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075536.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..117
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..117
                     /product="cysteine protease ATG4A-like isoform X1"
                     /calculated_mol_wt=12549
     Region          <1..>25
                     /region_name="Peptidase_C54"
                     /note="Peptidase family C54; pfam03416"
                     /db_xref="CDD:460915"
     CDS             1..117
                     /gene="LOC128853140"
                     /coded_by="XM_054075536.1:32..385"
                     /db_xref="GeneID:128853140"
ORIGIN      
        1 maqmgvgegk sigewfgpnt vaqvlnvgme qnttcapeas ivlpralksl licavpetlc
       61 qegpvqergw khngararht sgctqktqcl dsfggklipg seawlrcfll lwleapr
//
LOCUS       XP_053931512             107 aa            linear   VRT 09-MAR-2023
DEFINITION  cysteine protease ATG4A-like isoform X2 [Cuculus canorus].
ACCESSION   XP_053931512
VERSION     XP_053931512.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075537.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..107
                     /product="cysteine protease ATG4A-like isoform X2"
                     /calculated_mol_wt=11440
     Region          <1..>25
                     /region_name="Peptidase_C54"
                     /note="Peptidase family C54; pfam03416"
                     /db_xref="CDD:460915"
     CDS             1..107
                     /gene="LOC128853140"
                     /coded_by="XM_054075537.1:32..355"
                     /db_xref="GeneID:128853140"
ORIGIN      
        1 maqmgvgegk sigewfgpnt vaqvlnvgme qnttcapeas ivlpralksl licavpetlc
       61 qegpvqergw khngararht sgfggklipg seawlrcfll lwleapr
//
LOCUS       XP_053931513             101 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853140 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931513
VERSION     XP_053931513.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075538.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..101
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..101
                     /product="uncharacterized protein LOC128853140 isoform X3"
                     /calculated_mol_wt=11237
     Region          <1..>26
                     /region_name="Peptidase_C54"
                     /note="Peptidase family C54; pfam03416"
                     /db_xref="CDD:460915"
     CDS             1..101
                     /gene="LOC128853140"
                     /coded_by="XM_054075538.1:17..322"
                     /db_xref="GeneID:128853140"
ORIGIN      
        1 maqmgvgegk sigewfgpnt vaqvlkcrkh fvrkalckse vgstterelg tlqgvpkrpn
       61 vltalvensf ldrkhgfgvf fyygwkllge gnkrrysctr l
//
LOCUS       XP_053931515              93 aa            linear   VRT 09-MAR-2023
DEFINITION  cysteine protease ATG4A-like isoform X4 [Cuculus canorus].
ACCESSION   XP_053931515
VERSION     XP_053931515.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075540.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..93
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..93
                     /product="cysteine protease ATG4A-like isoform X4"
                     /calculated_mol_wt=9916
     Region          <1..>25
                     /region_name="Peptidase_C54"
                     /note="Peptidase family C54; pfam03416"
                     /db_xref="CDD:460915"
     CDS             1..93
                     /gene="LOC128853140"
                     /coded_by="XM_054075540.1:32..313"
                     /db_xref="GeneID:128853140"
ORIGIN      
        1 maqmgvgegk sigewfgpnt vaqvlnvgme qnttcapeas ivlpralksl licavpetlc
       61 qegpvqergw khngararht sglsfrnill llf
//
LOCUS       XP_053931516              91 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853140 isoform X5 [Cuculus canorus].
ACCESSION   XP_053931516
VERSION     XP_053931516.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075541.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..91
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..91
                     /product="uncharacterized protein LOC128853140 isoform X5"
                     /calculated_mol_wt=10175
     Region          <1..>26
                     /region_name="Peptidase_C54"
                     /note="Peptidase family C54; pfam03416"
                     /db_xref="CDD:460915"
     CDS             1..91
                     /gene="LOC128853140"
                     /coded_by="XM_054075541.1:17..292"
                     /db_xref="GeneID:128853140"
ORIGIN      
        1 maqmgvgegk sigewfgpnt vaqvlkcrkh fvrkalckse vgstterelg tlqalvensf
       61 ldrkhgfgvf fyygwkllge gnkrrysctr l
//
LOCUS       XP_053931517              86 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853140 isoform X6 [Cuculus canorus].
ACCESSION   XP_053931517
VERSION     XP_053931517.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075542.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..86
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..86
                     /product="uncharacterized protein LOC128853140 isoform X6"
                     /calculated_mol_wt=9202
     Region          <1..>26
                     /region_name="Peptidase_C54"
                     /note="Peptidase family C54; pfam03416"
                     /db_xref="CDD:460915"
     CDS             1..86
                     /gene="LOC128853140"
                     /coded_by="XM_054075542.1:17..277"
                     /db_xref="GeneID:128853140"
ORIGIN      
        1 maqmgvgegk sigewfgpnt vaqvlkcrkh fvrkalckse vgstterelg tlqgsvlets
       61 ssssskevrk tkqptlhpfp vgwlgk
//
LOCUS       XP_053931518             117 aa            linear   VRT 09-MAR-2023
DEFINITION  cysteine protease ATG4A-like isoform X1 [Cuculus canorus].
ACCESSION   XP_053931518
VERSION     XP_053931518.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075543.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..117
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..117
                     /product="cysteine protease ATG4A-like isoform X1"
                     /calculated_mol_wt=12549
     Region          <1..>25
                     /region_name="Peptidase_C54"
                     /note="Peptidase family C54; pfam03416"
                     /db_xref="CDD:460915"
     CDS             1..117
                     /gene="LOC128853141"
                     /coded_by="XM_054075543.1:321..674"
                     /db_xref="GeneID:128853141"
ORIGIN      
        1 maqmgvgegk sigewfgpnt vaqvlnvgme qnttcapeas ivlpralksl licavpetlc
       61 qegpvqergw khngararht sgctqktqcl dsfggklipg seawlrcfll lwleapr
//
LOCUS       XP_053931519             107 aa            linear   VRT 09-MAR-2023
DEFINITION  cysteine protease ATG4A-like isoform X2 [Cuculus canorus].
ACCESSION   XP_053931519
VERSION     XP_053931519.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075544.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..107
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..107
                     /product="cysteine protease ATG4A-like isoform X2"
                     /calculated_mol_wt=11440
     Region          <1..>25
                     /region_name="Peptidase_C54"
                     /note="Peptidase family C54; pfam03416"
                     /db_xref="CDD:460915"
     CDS             1..107
                     /gene="LOC128853141"
                     /coded_by="XM_054075544.1:321..644"
                     /db_xref="GeneID:128853141"
ORIGIN      
        1 maqmgvgegk sigewfgpnt vaqvlnvgme qnttcapeas ivlpralksl licavpetlc
       61 qegpvqergw khngararht sgfggklipg seawlrcfll lwleapr
//
LOCUS       XP_053931520             101 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853141 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931520
VERSION     XP_053931520.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075545.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..101
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..101
                     /product="uncharacterized protein LOC128853141 isoform X3"
                     /calculated_mol_wt=11237
     Region          <1..>26
                     /region_name="Peptidase_C54"
                     /note="Peptidase family C54; pfam03416"
                     /db_xref="CDD:460915"
     CDS             1..101
                     /gene="LOC128853141"
                     /coded_by="XM_054075545.1:321..626"
                     /db_xref="GeneID:128853141"
ORIGIN      
        1 maqmgvgegk sigewfgpnt vaqvlkcrkh fvrkalckse vgstterelg tlqgvpkrpn
       61 vltalvensf ldrkhgfgvf fyygwkllge gnkrrysctr l
//
LOCUS       XP_053931521              91 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853141 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931521
VERSION     XP_053931521.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075546.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..91
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..91
                     /product="uncharacterized protein LOC128853141 isoform X4"
                     /calculated_mol_wt=10175
     Region          <1..>26
                     /region_name="Peptidase_C54"
                     /note="Peptidase family C54; pfam03416"
                     /db_xref="CDD:460915"
     CDS             1..91
                     /gene="LOC128853141"
                     /coded_by="XM_054075546.1:321..596"
                     /db_xref="GeneID:128853141"
ORIGIN      
        1 maqmgvgegk sigewfgpnt vaqvlkcrkh fvrkalckse vgstterelg tlqalvensf
       61 ldrkhgfgvf fyygwkllge gnkrrysctr l
//
LOCUS       XP_009558014              78 aa            linear   VRT 09-MAR-2023
DEFINITION  cytochrome c oxidase subunit 7B, mitochondrial [Cuculus canorus].
ACCESSION   XP_009558014
VERSION     XP_009558014.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009559719.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009558014.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..78
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..78
                     /product="cytochrome c oxidase subunit 7B, mitochondrial"
                     /calculated_mol_wt=8492
     Region          16..78
                     /region_name="COX7B"
                     /note="Cytochrome C oxidase chain VIIB; pfam05392"
                     /db_xref="CDD:461637"
     Site            order(33..34,38,47..48,52,62,67,69,71,73..76)
                     /site_type="other"
                     /note="Subunit IV/VIIb interface [polypeptide binding]"
                     /db_xref="CDD:238696"
     Site            63..64
                     /site_type="other"
                     /note="Subunit I/VIIb interfae [polypeptide binding]"
                     /db_xref="CDD:238696"
     Site            76
                     /site_type="other"
                     /note="Subunit VIc/VIIb interface [polypeptide binding]"
                     /db_xref="CDD:238696"
     CDS             1..78
                     /gene="LOC104058234"
                     /coded_by="XM_009559719.2:170..406"
                     /db_xref="GeneID:104058234"
ORIGIN      
        1 mipaaraals laarsiqrta vrqahrkhep dfhdkygnlv llggaavftv vwgyvltqag
       61 iewglspvgr vtpkewre
//
LOCUS       XP_053931522             140 aa            linear   VRT 09-MAR-2023
DEFINITION  PDZ domain-containing protein 11 [Cuculus canorus].
ACCESSION   XP_053931522
VERSION     XP_053931522.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075547.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..140
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..140
                     /product="PDZ domain-containing protein 11"
                     /calculated_mol_wt=15936
     Region          46..128
                     /region_name="PDZ_PDZD11-like"
                     /note="PDZ domain of PDZ domain-containing protein 11, and
                     related domains; cd06752"
                     /db_xref="CDD:467234"
     Site            order(57..63,75,78,107,111,114..115)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467234"
     CDS             1..140
                     /gene="PDZD11"
                     /coded_by="XM_054075547.1:45..467"
                     /db_xref="GeneID:104054295"
ORIGIN      
        1 magrppyeef pvvflppyes ppawvppher idhpeyssel trflprtvll rkppgaqlgf
       61 nirggkasql gifiskvipd sdahraglqe gdqvlsvndv dfqdiehska veilktarei
      121 smrvryfpyn yqrqkertvh
//
LOCUS       XP_009570295             488 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-aminobutyric acid receptor subunit beta-4 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009570295
VERSION     XP_009570295.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009572000.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..488
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..488
                     /product="gamma-aminobutyric acid receptor subunit beta-4
                     isoform X1"
                     /calculated_mol_wt=55997
     Region          38..486
                     /region_name="LIC"
                     /note="Cation transporter family protein; cl42365"
                     /db_xref="CDD:455710"
     CDS             1..488
                     /gene="LOC104069031"
                     /coded_by="XM_009572000.2:874..2340"
                     /db_xref="GeneID:104069031"
ORIGIN      
        1 mwtfqadrls givsalaalc laccaqspst gnisvvkeiv dkllkgydvr lrpdfggnpv
       61 tvgmsihiss idqisevnmd ytitmyfqqs wrdkrlaynd lplnltldnr vadqlwlpdt
      121 yflndkksfl hgvtvknrmi rlhpdgtvly glritttaac mmdlrrypld qqnctleies
      181 ygytvddivf fwqgndsavt gmevlelpqf tiieqrlvsr evvfttgsyl rlslsfrikr
      241 nigyfilqty mpsilitils wvsfwinyda saarvalgvt tvltmttint hlretlpkip
      301 yvkaidvylm gcfvfvflal leyafvnyif fgrgprqqkk qseriskann erhryeekrv
      361 reqvdpygni llstlemnne llatdmmssv gdsrnsvmsf egsgiqfrkq lasrdgfghh
      421 ptldrhvplt hhaaarnran crlrrrsskl klkipdltdv stidkwsrii fpitfgffnl
      481 vywlyyvn
//
LOCUS       XP_009570296             484 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-aminobutyric acid receptor subunit beta-4 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_009570296
VERSION     XP_009570296.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009572001.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..484
                     /product="gamma-aminobutyric acid receptor subunit beta-4
                     isoform X2"
                     /calculated_mol_wt=55484
     Region          38..482
                     /region_name="LIC"
                     /note="Cation transporter family protein; cl42365"
                     /db_xref="CDD:455710"
     CDS             1..484
                     /gene="LOC104069031"
                     /coded_by="XM_009572001.2:874..2328"
                     /db_xref="GeneID:104069031"
ORIGIN      
        1 mwtfqadrls givsalaalc laccaqspst gnisvvkeiv dkllkgydvr lrpdfggnpv
       61 tvgmsihiss idqisevnmd ytitmyfqqs wrdkrlaynd lplnltldnr vadqlwlpdt
      121 yflndkksfl hgvtvknrmi rlhpdgtvly glritttaac mmdlrrypld qqnctleies
      181 ygytvddivf fwqgndsavt gmevlelpqf tiieqrlvsr evvfttgsyl rlslsfrikr
      241 nigyfilqty mpsilitils wvsfwinyda saarvalgvt tvltmttint hlretlpkip
      301 yvkaidvylm gcfvfvflal leyafvnyif fgrgprqqkk qseriskann erhryeekrv
      361 dpygnillst lemnnellat dmmssvgdsr nsvmsfegsg iqfrkqlasr dgfghhptld
      421 rhvplthhaa arnrancrlr rrssklklki pdltdvstid kwsriifpit fgffnlvywl
      481 yyvn
//
LOCUS       XP_053931523             401 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853144 [Cuculus canorus].
ACCESSION   XP_053931523
VERSION     XP_053931523.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075548.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..401
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..401
                     /product="uncharacterized protein LOC128853144"
                     /calculated_mol_wt=45028
     CDS             1..401
                     /gene="LOC128853144"
                     /coded_by="XM_054075548.1:89..1294"
                     /db_xref="GeneID:128853144"
ORIGIN      
        1 mevlegcrqt vrvaapngya nrlfqgntee gsidmlescs aehctssdai pneqeeapry
       61 kkttkgsriw nfvrrrkels ankgrpqsmi llgvtsevse lkktsfmdri rplkkgrtsr
      121 vpksvdlras rvqdacdpee dhhgsagqra vyrvrklsdg rrpsrhsyag yiddldssfe
      181 dielnisipd idasesrclr disarlhred ndsncqktpa rrseslnfet skspaitegd
      241 hqrrcpvpsq eskrgrssdv wsylkgislt skdnskladq rletnfqnle nttdhspsdf
      301 dfdtrceenl sqrkksnstt ksthfggvvr fltsvaeaar rlrgssrafs pdekrpqqsl
      361 rswrqdvash kvalvienes arafctvgac lqsriqgrgi i
//
LOCUS       XP_053931524             402 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear protein AMMECR1 [Cuculus canorus].
ACCESSION   XP_053931524
VERSION     XP_053931524.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075549.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..402
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..402
                     /product="nuclear protein AMMECR1"
                     /calculated_mol_wt=42806
     Region          201..370
                     /region_name="AMMECR1"
                     /note="pfam01871"
                     /db_xref="CDD:460368"
     CDS             1..402
                     /gene="AMMECR1"
                     /coded_by="XM_054075549.1:16..1224"
                     /db_xref="GeneID:104058329"
ORIGIN      
        1 mlktcsylpc tirsflfisl fsctdhlkdn lsckqnprsl irgtegsqtr iacqpqhgga
       61 aarpagggar arppagrppp ppamgrkrcv ggdgskmaag ccgvkkqkls ssppsgsagp
      121 ggggsrcgga aaaggggdpg apaagprlng lgalagggca lspppgcggg paglsppaas
      181 llssspgpgc rkmvvsaemc cfcfdvlych lygyqpprsp rftndpyplf vtwkigrdkr
      241 lrgcigtfsa mnlhsglrey tltsalkdsr fppmtrdelp rlfcsvsllt nfedvcdymd
      301 wevgvhgiri efinekgskr tatylpevak eqgwdhiqti dsllrkggyk apitnefrkt
      361 ikltryrsek mtmsyteyla hrqhhhfqng ighplppynh ys
//
LOCUS       XP_053931526             696 aa            linear   VRT 09-MAR-2023
DEFINITION  highly divergent homeobox isoform X1 [Cuculus canorus].
ACCESSION   XP_053931526
VERSION     XP_053931526.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075551.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..696
                     /product="highly divergent homeobox isoform X1"
                     /calculated_mol_wt=76773
     Region          4..59
                     /region_name="HOX"
                     /note="Homeodomain; smart00389"
                     /db_xref="CDD:197696"
     Site            order(6,50,53..54,57)
                     /site_type="other"
                     /note="specific DNA base contacts [nucleotide binding]"
                     /db_xref="CDD:238039"
     Region          445..501
                     /region_name="homeodomain"
                     /note="Homeodomain; DNA binding domains involved in the
                     transcriptional regulation of key eukaryotic developmental
                     processes; may bind to DNA as monomers or as homo- and/or
                     heterodimers, in a sequence-specific manner; cd00086"
                     /db_xref="CDD:238039"
     Site            order(447,491,494..495,498)
                     /site_type="other"
                     /note="specific DNA base contacts [nucleotide binding]"
                     /db_xref="CDD:238039"
     CDS             1..696
                     /gene="HDX"
                     /coded_by="XM_054075551.1:231..2321"
                     /db_xref="GeneID:104054282"
ORIGIN      
        1 mnlrsvftve qqrilqryye ngmtnqsknc fqlilqcaqe tkldfsvvrt wvgnkrrkms
       61 sksavesggt ppgtvpatps vppeaavknv vniarsqsqq sswtssnndv ivtgiyspas
      121 ssgrqgstkq sasvaeihkt siprvpgkgd tefqqqhipi grqvphckna sllvgektii
      181 lsrqtsvlns ansiyshtkk sysgssvqta elvlpqkpmi chrpckaepa gcqrlqkpeh
      241 vslashvspg qragtrdpsc stqnleirev fslavtdqpq rivggsgtqk rcpvegscls
      301 iametgdadd eyareeelas mgaqiqsysr ycessssvrv dnqsaalsgp grnvscgsqm
      361 vntrdvpdsm lyhsrdyhlp artslhttss tlynsanpsr stfsphftss sqlrlsqnqn
      421 nyqisgnltv pwitgcsrkr alqdrtqfsd rdlatlkkyw dngmtslgsv crekieavaa
      481 elnvdceivr twignrrrky rlmgievppp rggpadfsdq sefvsksaln pgeeaatevg
      541 ddndrndevs iclsegssqe etnealqnee ichkdddqnp epadnvkiei iddeesdmis
      601 nsevdqmssl ldykneevrf ienelenhkq kyfelqtftr slilaiksdd keqqqallsd
      661 lppeleemdf nhtspepddt sfslsslsek nasdsl
//
LOCUS       XP_053931527             696 aa            linear   VRT 09-MAR-2023
DEFINITION  highly divergent homeobox isoform X1 [Cuculus canorus].
ACCESSION   XP_053931527
VERSION     XP_053931527.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075552.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..696
                     /product="highly divergent homeobox isoform X1"
                     /calculated_mol_wt=76773
     Region          4..59
                     /region_name="HOX"
                     /note="Homeodomain; smart00389"
                     /db_xref="CDD:197696"
     Site            order(6,50,53..54,57)
                     /site_type="other"
                     /note="specific DNA base contacts [nucleotide binding]"
                     /db_xref="CDD:238039"
     Region          445..501
                     /region_name="homeodomain"
                     /note="Homeodomain; DNA binding domains involved in the
                     transcriptional regulation of key eukaryotic developmental
                     processes; may bind to DNA as monomers or as homo- and/or
                     heterodimers, in a sequence-specific manner; cd00086"
                     /db_xref="CDD:238039"
     Site            order(447,491,494..495,498)
                     /site_type="other"
                     /note="specific DNA base contacts [nucleotide binding]"
                     /db_xref="CDD:238039"
     CDS             1..696
                     /gene="HDX"
                     /coded_by="XM_054075552.1:778..2868"
                     /db_xref="GeneID:104054282"
ORIGIN      
        1 mnlrsvftve qqrilqryye ngmtnqsknc fqlilqcaqe tkldfsvvrt wvgnkrrkms
       61 sksavesggt ppgtvpatps vppeaavknv vniarsqsqq sswtssnndv ivtgiyspas
      121 ssgrqgstkq sasvaeihkt siprvpgkgd tefqqqhipi grqvphckna sllvgektii
      181 lsrqtsvlns ansiyshtkk sysgssvqta elvlpqkpmi chrpckaepa gcqrlqkpeh
      241 vslashvspg qragtrdpsc stqnleirev fslavtdqpq rivggsgtqk rcpvegscls
      301 iametgdadd eyareeelas mgaqiqsysr ycessssvrv dnqsaalsgp grnvscgsqm
      361 vntrdvpdsm lyhsrdyhlp artslhttss tlynsanpsr stfsphftss sqlrlsqnqn
      421 nyqisgnltv pwitgcsrkr alqdrtqfsd rdlatlkkyw dngmtslgsv crekieavaa
      481 elnvdceivr twignrrrky rlmgievppp rggpadfsdq sefvsksaln pgeeaatevg
      541 ddndrndevs iclsegssqe etnealqnee ichkdddqnp epadnvkiei iddeesdmis
      601 nsevdqmssl ldykneevrf ienelenhkq kyfelqtftr slilaiksdd keqqqallsd
      661 lppeleemdf nhtspepddt sfslsslsek nasdsl
//
LOCUS       XP_053931528             696 aa            linear   VRT 09-MAR-2023
DEFINITION  highly divergent homeobox isoform X1 [Cuculus canorus].
ACCESSION   XP_053931528
VERSION     XP_053931528.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075553.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..696
                     /product="highly divergent homeobox isoform X1"
                     /calculated_mol_wt=76773
     Region          4..59
                     /region_name="HOX"
                     /note="Homeodomain; smart00389"
                     /db_xref="CDD:197696"
     Site            order(6,50,53..54,57)
                     /site_type="other"
                     /note="specific DNA base contacts [nucleotide binding]"
                     /db_xref="CDD:238039"
     Region          445..501
                     /region_name="homeodomain"
                     /note="Homeodomain; DNA binding domains involved in the
                     transcriptional regulation of key eukaryotic developmental
                     processes; may bind to DNA as monomers or as homo- and/or
                     heterodimers, in a sequence-specific manner; cd00086"
                     /db_xref="CDD:238039"
     Site            order(447,491,494..495,498)
                     /site_type="other"
                     /note="specific DNA base contacts [nucleotide binding]"
                     /db_xref="CDD:238039"
     CDS             1..696
                     /gene="HDX"
                     /coded_by="XM_054075553.1:1195..3285"
                     /db_xref="GeneID:104054282"
ORIGIN      
        1 mnlrsvftve qqrilqryye ngmtnqsknc fqlilqcaqe tkldfsvvrt wvgnkrrkms
       61 sksavesggt ppgtvpatps vppeaavknv vniarsqsqq sswtssnndv ivtgiyspas
      121 ssgrqgstkq sasvaeihkt siprvpgkgd tefqqqhipi grqvphckna sllvgektii
      181 lsrqtsvlns ansiyshtkk sysgssvqta elvlpqkpmi chrpckaepa gcqrlqkpeh
      241 vslashvspg qragtrdpsc stqnleirev fslavtdqpq rivggsgtqk rcpvegscls
      301 iametgdadd eyareeelas mgaqiqsysr ycessssvrv dnqsaalsgp grnvscgsqm
      361 vntrdvpdsm lyhsrdyhlp artslhttss tlynsanpsr stfsphftss sqlrlsqnqn
      421 nyqisgnltv pwitgcsrkr alqdrtqfsd rdlatlkkyw dngmtslgsv crekieavaa
      481 elnvdceivr twignrrrky rlmgievppp rggpadfsdq sefvsksaln pgeeaatevg
      541 ddndrndevs iclsegssqe etnealqnee ichkdddqnp epadnvkiei iddeesdmis
      601 nsevdqmssl ldykneevrf ienelenhkq kyfelqtftr slilaiksdd keqqqallsd
      661 lppeleemdf nhtspepddt sfslsslsek nasdsl
//
LOCUS       XP_053931529             678 aa            linear   VRT 09-MAR-2023
DEFINITION  highly divergent homeobox isoform X2 [Cuculus canorus].
ACCESSION   XP_053931529
VERSION     XP_053931529.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075554.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..678
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..678
                     /product="highly divergent homeobox isoform X2"
                     /calculated_mol_wt=74832
     Region          4..59
                     /region_name="HOX"
                     /note="Homeodomain; smart00389"
                     /db_xref="CDD:197696"
     Site            order(6,50,53..54,57)
                     /site_type="other"
                     /note="specific DNA base contacts [nucleotide binding]"
                     /db_xref="CDD:238039"
     Region          427..483
                     /region_name="homeodomain"
                     /note="Homeodomain; DNA binding domains involved in the
                     transcriptional regulation of key eukaryotic developmental
                     processes; may bind to DNA as monomers or as homo- and/or
                     heterodimers, in a sequence-specific manner; cd00086"
                     /db_xref="CDD:238039"
     Site            order(429,473,476..477,480)
                     /site_type="other"
                     /note="specific DNA base contacts [nucleotide binding]"
                     /db_xref="CDD:238039"
     CDS             1..678
                     /gene="HDX"
                     /coded_by="XM_054075554.1:233..2269"
                     /db_xref="GeneID:104054282"
ORIGIN      
        1 mnlrsvftve qqrilqryye ngmtnqsknc fqlilqcaqe tkldfsvvrt wvgnkrrkms
       61 sksavesggt ppgtvpatps vppeaavknv vniarsqsqq sswtssnndv ivtgiyspas
      121 ssgrqgstkq sasvaeihkt siprvpgkgd tefqqqhipi grqvphckna sllvgektii
      181 lsrqtsvlns ansiyshtkk sysgssvqta elvlpqkpmi chrpckaepa gcqrlqkpeh
      241 vslashvspg qragtrdpsc stqnleirev fslavtdqpq rivggsgtqk rcpvegscls
      301 iametgdadd eyareeelas mgaqiqsysr ycessssvrv dnqsaalsgp grnvscgsqm
      361 vntrdvpdsm lyhsrdyhlp artslhttss tlynsanpsr stfsphftss sqlrlsqnqn
      421 nyqlqdrtqf sdrdlatlkk ywdngmtslg svcrekieav aaelnvdcei vrtwignrrr
      481 kyrlmgievp pprggpadfs dqsefvsksa lnpgeeaate vgddndrnde vsiclsegss
      541 qeetnealqn eeichkdddq npepadnvki eiiddeesdm isnsevdqms slldykneev
      601 rfienelenh kqkyfelqtf trslilaiks ddkeqqqall sdlppeleem dfnhtspepd
      661 dtsfslssls eknasdsl
//
LOCUS       XP_053931530             647 aa            linear   VRT 09-MAR-2023
DEFINITION  highly divergent homeobox isoform X3 [Cuculus canorus].
ACCESSION   XP_053931530
VERSION     XP_053931530.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075555.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..647
                     /product="highly divergent homeobox isoform X3"
                     /calculated_mol_wt=71202
     Region          4..59
                     /region_name="HOX"
                     /note="Homeodomain; smart00389"
                     /db_xref="CDD:197696"
     Site            order(6,50,53..54,57)
                     /site_type="other"
                     /note="specific DNA base contacts [nucleotide binding]"
                     /db_xref="CDD:238039"
     CDS             1..647
                     /gene="HDX"
                     /coded_by="XM_054075555.1:233..2176"
                     /db_xref="GeneID:104054282"
ORIGIN      
        1 mnlrsvftve qqrilqryye ngmtnqsknc fqlilqcaqe tkldfsvvrt wvgnkrrkms
       61 sksavesggt ppgtvpatps vppeaavknv vniarsqsqq sswtssnndv ivtgiyspas
      121 ssgrqgstkq sasvaeihkt siprvpgkgd tefqqqhipi grqvphckna sllvgektii
      181 lsrqtsvlns ansiyshtkk sysgssvqta elvlpqkpmi chrpckaepa gcqrlqkpeh
      241 vslashvspg qragtrdpsc stqnleirev fslavtdqpq rivggsgtqk rcpvegscls
      301 iametgdadd eyareeelas mgaqiqsysr ycessssvrv dnqsaalsgp grnvscgsqm
      361 vntrdvpdsm lyhsrdyhlp artslhttss tlynsanpsr stfsphftss sqlrlsqnqn
      421 nyqisgnltv pwitgcsrkr atwignrrrk yrlmgievpp prggpadfsd qsefvsksal
      481 npgeeaatev gddndrndev siclsegssq eetnealqne eichkdddqn pepadnvkie
      541 iiddeesdmi snsevdqmss lldykneevr fienelenhk qkyfelqtft rslilaiksd
      601 dkeqqqalls dlppeleemd fnhtspepdd tsfslsslse knasdsl
//
LOCUS       XP_053931532             256 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription initiation factor TFIID subunit 9B isoform X1
            [Cuculus canorus].
ACCESSION   XP_053931532
VERSION     XP_053931532.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075557.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..256
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..256
                     /product="transcription initiation factor TFIID subunit 9B
                     isoform X1"
                     /calculated_mol_wt=27798
     Region          9..130
                     /region_name="TFIID-31kDa"
                     /note="Transcription initiation factor IID, 31kD subunit;
                     pfam02291"
                     /db_xref="CDD:460525"
     Region          <152..>240
                     /region_name="DUF5585"
                     /note="Family of unknown function (DUF5585); pfam17823"
                     /db_xref="CDD:465521"
     CDS             1..256
                     /gene="TAF9B"
                     /coded_by="XM_054075557.1:92..862"
                     /db_xref="GeneID:104054294"
ORIGIN      
        1 mepakmaspk sapkdaqvma qilkdmgite yeprvinqml efayryvtti ledakiyssh
       61 akkssvdadd vrlaiqcrtd qsftsppprd flldiarqkn qtplplikpy sgprlppdry
      121 cltapnyrlk slqkkqvsss agritvprls vgavssrpst ptlgtpsaqt vsvsakvgtp
      181 vslsgqrftv qipssqatvk satpttptvq nvlinpslig pknilittnm vssqttases
      241 nplkrkhedd ddydnl
//
LOCUS       XP_009553565             255 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription initiation factor TFIID subunit 9B isoform X2
            [Cuculus canorus].
ACCESSION   XP_009553565
VERSION     XP_009553565.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009555270.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..255
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..255
                     /product="transcription initiation factor TFIID subunit 9B
                     isoform X2"
                     /calculated_mol_wt=27670
     Region          9..130
                     /region_name="TFIID-31kDa"
                     /note="Transcription initiation factor IID, 31kD subunit;
                     pfam02291"
                     /db_xref="CDD:460525"
     Region          <151..>239
                     /region_name="DUF5585"
                     /note="Family of unknown function (DUF5585); pfam17823"
                     /db_xref="CDD:465521"
     CDS             1..255
                     /gene="TAF9B"
                     /coded_by="XM_009555270.2:91..858"
                     /db_xref="GeneID:104054294"
ORIGIN      
        1 mepakmaspk sapkdaqvma qilkdmgite yeprvinqml efayryvtti ledakiyssh
       61 akkssvdadd vrlaiqcrtd qsftsppprd flldiarqkn qtplplikpy sgprlppdry
      121 cltapnyrlk slqkkvsssa gritvprlsv gavssrpstp tlgtpsaqtv svsakvgtpv
      181 slsgqrftvq ipssqatvks atpttptvqn vlinpsligp knilittnmv ssqttasesn
      241 plkrkheddd dydnl
//
LOCUS       XP_053931533             106 aa            linear   VRT 09-MAR-2023
DEFINITION  60S ribosomal protein L36a [Cuculus canorus].
ACCESSION   XP_053931533
VERSION     XP_053931533.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075558.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..106
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..106
                     /product="60S ribosomal protein L36a"
                     /calculated_mol_wt=12326
     Region          1..86
                     /region_name="PTZ00157"
                     /note="60S ribosomal protein L36a; Provisional"
                     /db_xref="CDD:240296"
     CDS             1..106
                     /gene="RPL36A"
                     /coded_by="XM_054075558.1:94..414"
                     /db_xref="GeneID:104069052"
ORIGIN      
        1 mvnvpktrrt yckkcgkhqp hkvtqykkgk dslyaqgkrr ydrkqsgygg qtkpifrkka
       61 kttkkivlrl ecvepncrsk rmlaikrckh felggdkkrk gqviqf
//
LOCUS       XP_053931534             857 aa            linear   VRT 09-MAR-2023
DEFINITION  SLIT and NTRK-like protein 2 [Cuculus canorus].
ACCESSION   XP_053931534
VERSION     XP_053931534.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075559.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..857
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..857
                     /product="SLIT and NTRK-like protein 2"
                     /calculated_mol_wt=96843
     Region          <40..>218
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          65..88
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          89..112
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          113..136
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          137..160
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          161..182
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          209..404
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          217..>253
                     /region_name="LRRCT"
                     /note="Leucine rich repeat C-terminal domain; smart00082"
                     /db_xref="CDD:214507"
     Region          <361..>533
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          382..402
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          403..463
                     /region_name="LRR_8"
                     /note="Leucine rich repeat; pfam13855"
                     /db_xref="CDD:404697"
     Region          405..428
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          429..452
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          453..472
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          477..495
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          500..513
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275378"
     Region          533..591
                     /region_name="LRRCT"
                     /note="Leucine rich repeat C-terminal domain; smart00082"
                     /db_xref="CDD:214507"
     CDS             1..857
                     /gene="SLITRK2"
                     /coded_by="XM_054075559.1:241..2814"
                     /db_xref="GeneID:104063058"
ORIGIN      
        1 mlkgvwllsl ltvagisqte srkpakdics ksrcpceeke nvlnincenk gfttvslllp
       61 ppskiyqlfl ngnaltrlfp nefvnysnav tlhlgnndmq eirtgafsgl rtlkrlhlnn
      121 nklevlkedt flglesleyl qadynyisai eagafsklnk lkvlilndnl llslpsnvfr
      181 fvllthldlr gnrlkmmpfa gvlehiggim eiqleenpwn ctcdllplka wldtitvfvg
      241 eivcetpfrl hgkdvtqltr qdlcprksss dsnqrekhpv lsdphisrls ptansainpt
      301 rapkasrppk trnrptprvt vskdrqifgp imvyqtkspm pitcpagcic tsqssdngln
      361 vncqekkisn isdlypkpts pkklyltsny lqviyrtdli eyssldllhl gnnriaviqe
      421 gaftnltslr rlylngnyle ilypsmfdgl yslqylyley nvikeilprt fdalsnlhll
      481 flnnnllrsl pdkvfggtsl trlnlrnnhf shlpvrgvld qlsaliqidl qenpwdctcd
      541 ilglrnwieq vtdqnkqqsn ppvvinevvc esptkysgqh lkflskeaic penpnlsdss
      601 llsmnqntdt phllgvspss ypemhtevpl svlilgllvv filsvcfgag lfvfvlkrrk
      661 gvqsmpssan nldissfqlq ygsyntethd kteghvynyi pppvgqmcqn piymqkegdp
      721 vayyrnlhef sysnldhkke dptslaftis aaellekqts prepellyqn iaervkelps
      781 gglvhynfct lpkrqfapsy esrrqnqdri nktvlygtpr kyfaeqskpe hpllqgklqt
      841 epdylevlek qtaisql
//
LOCUS       XP_053931536             424 aa            linear   VRT 09-MAR-2023
DEFINITION  histone deacetylase 8 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931536
VERSION     XP_053931536.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075561.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..424
                     /product="histone deacetylase 8 isoform X1"
                     /calculated_mol_wt=46208
     Region          64..424
                     /region_name="HDAC8"
                     /note="Histone deacetylase 8 (HDAC8); cd10000"
                     /db_xref="CDD:212524"
     Site            order(147..148,188..190,198..199,225,227,255,314,321,351,
                     353)
                     /site_type="active"
                     /db_xref="CDD:212524"
     CDS             1..424
                     /gene="HDAC8"
                     /coded_by="XM_054075561.1:16..1290"
                     /db_xref="GeneID:104058195"
ORIGIN      
        1 mgpklpvrqg rtaalgitkr dyrtqhtpgg tavpsilrag lqfpaypgar pgagqpvpma
       61 aaavyvysse yvalcdslck vpkrasmvhs lieayslldh mkivkpkvas meematfhtd
      121 aylqhlqkvs eegdddhpes veyglgydcp ategifeyaa avggatitaa qclldgkckv
      181 ainwpggwhh akkdeasgfc ylndavlgil rlrqkfdrvl yidldlhhgd gvedafsfts
      241 kvmtvslhkf spgffpgtgd vtdvglgkgr yysvnvpiqd giqdekyyqi cetvlkevya
      301 afnpdavvlq lgadtiagdp mcsfnmtpeg vgrclkyvlq wqlatlilgg ggynlantar
      361 cwayltgvil grtlsseipd heffteygpd yvleitpscr pdrnepqriq eilnsikgnl
      421 khvv
//
LOCUS       XP_053931537             424 aa            linear   VRT 09-MAR-2023
DEFINITION  histone deacetylase 8 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931537
VERSION     XP_053931537.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075562.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..424
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..424
                     /product="histone deacetylase 8 isoform X1"
                     /calculated_mol_wt=46208
     Region          64..424
                     /region_name="HDAC8"
                     /note="Histone deacetylase 8 (HDAC8); cd10000"
                     /db_xref="CDD:212524"
     Site            order(147..148,188..190,198..199,225,227,255,314,321,351,
                     353)
                     /site_type="active"
                     /db_xref="CDD:212524"
     CDS             1..424
                     /gene="HDAC8"
                     /coded_by="XM_054075562.1:16..1290"
                     /db_xref="GeneID:104058195"
ORIGIN      
        1 mgpklpvrqg rtaalgitkr dyrtqhtpgg tavpsilrag lqfpaypgar pgagqpvpma
       61 aaavyvysse yvalcdslck vpkrasmvhs lieayslldh mkivkpkvas meematfhtd
      121 aylqhlqkvs eegdddhpes veyglgydcp ategifeyaa avggatitaa qclldgkckv
      181 ainwpggwhh akkdeasgfc ylndavlgil rlrqkfdrvl yidldlhhgd gvedafsfts
      241 kvmtvslhkf spgffpgtgd vtdvglgkgr yysvnvpiqd giqdekyyqi cetvlkevya
      301 afnpdavvlq lgadtiagdp mcsfnmtpeg vgrclkyvlq wqlatlilgg ggynlantar
      361 cwayltgvil grtlsseipd heffteygpd yvleitpscr pdrnepqriq eilnsikgnl
      421 khvv
//
LOCUS       XP_053931538             338 aa            linear   VRT 09-MAR-2023
DEFINITION  histone deacetylase 8 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931538
VERSION     XP_053931538.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075563.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..338
                     /product="histone deacetylase 8 isoform X2"
                     /calculated_mol_wt=37212
     Region          1..338
                     /region_name="HDAC8"
                     /note="Histone deacetylase 8 (HDAC8); cd10000"
                     /db_xref="CDD:212524"
     Site            order(61..62,102..104,112..113,139,141,169,228,235,265,
                     267)
                     /site_type="active"
                     /db_xref="CDD:212524"
     CDS             1..338
                     /gene="HDAC8"
                     /coded_by="XM_054075563.1:92..1108"
                     /db_xref="GeneID:104058195"
ORIGIN      
        1 mvhslieays lldhmkivkp kvasmeemat fhtdaylqhl qkvseegddd hpesveyglg
       61 ydcpategif eyaaavggat itaaqclldg kckvainwpg gwhhakkdea sgfcylndav
      121 lgilrlrqkf drvlyidldl hhgdgvedaf sftskvmtvs lhkfspgffp gtgdvtdvgl
      181 gkgryysvnv piqdgiqdek yyqicetvlk evyaafnpda vvlqlgadti agdpmcsfnm
      241 tpegvgrclk yvlqwqlatl ilggggynla ntarcwaylt gvilgrtlss eipdheffte
      301 ygpdyvleit pscrpdrnep qriqeilnsi kgnlkhvv
//
LOCUS       XP_053931539             263 aa            linear   VRT 09-MAR-2023
DEFINITION  40S ribosomal protein S4, X isoform [Cuculus canorus].
ACCESSION   XP_053931539
VERSION     XP_053931539.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075564.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..263
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..263
                     /product="40S ribosomal protein S4, X isoform"
                     /calculated_mol_wt=29464
     Region          1..260
                     /region_name="PLN00036"
                     /note="40S ribosomal protein S4; Provisional"
                     /db_xref="CDD:177670"
     CDS             1..263
                     /gene="RPS4X"
                     /coded_by="XM_054075564.1:168..959"
                     /db_xref="GeneID:104058206"
ORIGIN      
        1 margpkkhlk rvaapkhwml dkltgvfapr pstgphklre clpliiflrn rlkyaltgde
       61 vkkicmqrfi kidgkvrtdt typagfmdvi siektgehfr lvydtkgrfa vhritpeeak
      121 yklckvrkif vgtkgiphlv thdartiryp dplikvndtv qidletgkit dfikfdtgnl
      181 cmvtgganlg rigvitnrer hpgsfdvvhv kdangnsfat rlsnifvigk gnkpwislpr
      241 gkgirltiae erdkrlaakq ssg
//
LOCUS       XP_053931540             482 aa            linear   VRT 09-MAR-2023
DEFINITION  T-box transcription factor TBX22 [Cuculus canorus].
ACCESSION   XP_053931540
VERSION     XP_053931540.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075565.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..482
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..482
                     /product="T-box transcription factor TBX22"
                     /calculated_mol_wt=53369
     Region          59..250
                     /region_name="T-box_TBX22-like"
                     /note="DNA-binding domain of T-box transcription factor 22
                     and related T-box proteins; cd20200"
                     /db_xref="CDD:410326"
     Site            order(86..87,120,167,170,183..184,227..230,235,238..239,
                     242..248)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410326"
     CDS             1..482
                     /gene="TBX22"
                     /coded_by="XM_054075565.1:124..1572"
                     /db_xref="GeneID:104054288"
ORIGIN      
        1 malssrahaf svealvgraa krkvpdghre eesgtgggqs rgapeqekrp kaesreagvq
       61 velqgselwr rfheigtemi itkagrrmfp svrvkvkgle plrqyyiaid vvpvdskryr
      121 yvyhssqwmv agntdhscit prlyihpdsp csgetwmrqi isfdrvkltn nemddkghii
      181 lqsmhkykpr vhviaqdsrf dlaqiqslpa egvqsfsfqe tefttvtayq nqqitklkid
      241 rnpfakgfrd pgrnrgvldt ypwrpplald ftafgadsqg gssssspvts sggtpsplnp
      301 llspscsppt fhlstssigv scpetylhnl nvplyykicp tsflrqqsfl fpsheklggs
      361 nprllphfmv dmpklssigi tnlkntkged lngqclqvps sasqmlyglh asgnifpssp
      421 iarealncsl hppyglygyn favpsrlmna ashfkvsdsi paslkdgrcn hsnwhptinh
      481 cl
//
LOCUS       XP_053931541             340 aa            linear   VRT 09-MAR-2023
DEFINITION  solute carrier family 25 member 43 [Cuculus canorus].
ACCESSION   XP_053931541
VERSION     XP_053931541.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075566.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..340
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..340
                     /product="solute carrier family 25 member 43"
                     /calculated_mol_wt=37778
     Region          8..100
                     /region_name="Mito_carr"
                     /note="Mitochondrial carrier protein; pfam00153"
                     /db_xref="CDD:395101"
     Region          101..184
                     /region_name="Mito_carr"
                     /note="Mitochondrial carrier protein; pfam00153"
                     /db_xref="CDD:395101"
     Region          197..292
                     /region_name="Mito_carr"
                     /note="Mitochondrial carrier protein; pfam00153"
                     /db_xref="CDD:395101"
     CDS             1..340
                     /gene="SLC25A43"
                     /coded_by="XM_054075566.1:151..1173"
                     /db_xref="GeneID:104064050"
ORIGIN      
        1 matwrrdgrv taaqrlccaa lagalslslt aplellsvla qvgarqcrrg lrraavglcr
       61 aeglralwkg nltaclrlcp ysalqlaatr rlvilftdel ghishwraim agslagmvat
      121 vvtyptdvik trlivqnrle psyegilhaf ykiyhqegll alyrgvspai lgaipfsags
      181 ffvyinldki wqepivhftp lqnfingcva agvaqtlsfp fetvkrkmqa qspwlphyga
      241 vdvhftgmtd cfrqtvknkg vlglwsgltp sllkivpyfg vmfstfefck rvclyrngyi
      301 esplnykltp gvdqslqpqe lkelllrren feprksalen
//
LOCUS       XP_053931542             298 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP/ATP translocase 2 [Cuculus canorus].
ACCESSION   XP_053931542
VERSION     XP_053931542.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075567.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..298
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..298
                     /product="ADP/ATP translocase 2"
                     /calculated_mol_wt=32801
     Region          7..296
                     /region_name="PTZ00169"
                     /note="ADP/ATP transporter on adenylate translocase;
                     Provisional"
                     /db_xref="CDD:240302"
     CDS             1..298
                     /gene="SLC25A5"
                     /coded_by="XM_054075567.1:58..954"
                     /db_xref="GeneID:104064051"
ORIGIN      
        1 mtdaavsfak dflaggvaaa isktavapie rvklllqvqh askqitadkq ykgiidcvvr
       61 ipreqgilsf wrgnlanvir yfptqalnfa fkdkykqifl ggvdkrtqfw ryfagnlasg
      121 gaagatslcf vypldfartr laadvgksga drefsglgdc lvktfrsdgf rglyqgfnvs
      181 vqgiiiyraa yfgiydtakg mlpdpknthi vvswmiaqtv tavaglvsyp fdtvrrrmmm
      241 qsgrkgsdim ytgtidcwrk iardegskaf fkgawsnvlr gmggafvlvl ydeikkyt
//
LOCUS       XP_053931544            1283 aa            linear   VRT 09-MAR-2023
DEFINITION  DNA excision repair protein ERCC-6-like [Cuculus canorus].
ACCESSION   XP_053931544
VERSION     XP_053931544.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075569.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1283
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1283
                     /product="DNA excision repair protein ERCC-6-like"
                     /calculated_mol_wt=144110
     Region          7..>60
                     /region_name="BTAD"
                     /note="Bacterial transcriptional activator domain;
                     pfam03704"
                     /db_xref="CDD:397662"
     Region          <87..606
                     /region_name="HepA"
                     /note="Superfamily II DNA or RNA helicase, SNF2 family
                     [Transcription, Replication, recombination, and repair];
                     COG0553"
                     /db_xref="CDD:440319"
     CDS             1..1283
                     /gene="ERCC6L"
                     /coded_by="XM_054075569.1:41..3892"
                     /db_xref="GeneID:104060515"
ORIGIN      
        1 maapeedeer yrrlvsgaka aagdgdlqea lrlfrlaaai rpseklrgrm qrveealaav
       61 geeedeeegf vdvcgsglli ygemheklfq hqregvafly rlhregrpgg iladdmglgk
      121 tiqviaflsg mfdaeliqhv llimpttlvs swlaefarwt pglrvkdfhg nsktertrnl
      181 eriqrkngii itsyqmlinn wkqlassreq efvwdyvild eahkikcpsn kttqcvyaip
      241 akhrilltgt pvqnnlremw slfdfacqgs llgtaktfrm eyenpitrar ekdatlgeka
      301 lglkisenlm tiikpyflrr tkediksnca depdaplped psennapvmp sltrkndfvv
      361 wvylvpvqee iyrnflcldh vkevlmttrs plaeltvlkk lcdhprllpa raciqlglee
      421 qecsgqhqgh rseegvlsgt dkidhlsdet liresgkmif lvgllerlre eghrtlvfsq
      481 srkmldiieh vlsrrqfkim ridgtvthlt erekrinafq snkdysvfll ttqvggvgit
      541 ltaasrvvif dpswnpatda qavdrayrig qkenvviyrl itcgtveeki yrrqvfkdsl
      601 irqttgdkkn pfryfskqel relftledtr tsatqiqlqs lhatqrktdl qldehitylh
      661 slemfgisdh dliytreiah eeqveseeah qyiqqrvqka helvqlesql rdqriegirn
      721 aceemlqrpp ervsepktls pglnkindsg lpqvadkhen dgvidltedk evqvlnvssk
      781 mtsltindld eellardvss idtellnnsk tvkqsniqes eqnlelsiis sspglhpldk
      841 esqspeekhs shvssdslie agnglsrhrl hspnesgmag dpkrsrdsem pdqvldphta
      901 lgadkndvpe ltgaatvpsl snvtpeihag lqksrvleas ledmsavslq eqvdfnlvle
      961 esdegwqdas drqrslehpe negfqlkags lctsptkpwl sengncgkpc haaeeepnns
     1021 lqgsemsees sgvftfsrkk rlkriasdse ddpitvleen qsekrsspls sprfqflegi
     1081 sastpkcdrs linalpspql tnsgrrstas rrslinrvvd evddigeimg atdeedydgd
     1141 eeqdylveea qecsgesaet eeeptgetln teesfhldai asgqseadem essqeestgd
     1201 aelqsgeqid yftqesisek evgqssspav gdyntlvdsg kklkddgklq ealncflqal
     1261 dmksgdpevm lmtlnlyrql aqk
//
LOCUS       XP_053931545             330 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat and SOCS box protein 12 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053931545
VERSION     XP_053931545.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075570.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..330
                     /product="ankyrin repeat and SOCS box protein 12 isoform
                     X1"
                     /calculated_mol_wt=36372
     Region          <25..204
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          35..61
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          71..99
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(74..75,78..80,82..83,87,90,99,101,103,107..108,
                     111..113,115..116,120,123,132,134,136,140..141,144..146,
                     148..149,153,156)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          101..132
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          134..164
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          177..240
                     /region_name="Ank_4"
                     /note="Ankyrin repeats (many copies); pfam13637"
                     /db_xref="CDD:372654"
     Region          178..204
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          218..250
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..330
                     /gene="ASB12"
                     /coded_by="XM_054075570.1:584..1576"
                     /db_xref="GeneID:104066245"
ORIGIN      
        1 mgdrvkkmsl mditkmfyml qpredeedng eseelnqavr eddyqtldkl lsqdrykrii
       61 nrrsgwgvps tplrlaatkg hlrsmevlla hgaevdsldv kaqtplfmav snghrecvkv
      121 llaagaspvg siynncspll iaardgdvdi lqqlldhgae tnvqarlpew aansaacsgp
      181 lylaavyghl ecfkmlllyg adpnynctee rvisqikepk tllesclrhg crrefvklli
      241 dfganvylpn vpvhetaprs kglelllqar gnlrgwpqaw kqalislglv qvasnspsll
      301 pllpisltqa fpqalppfaa sletrvglly
//
LOCUS       XP_053931546             330 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat and SOCS box protein 12 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053931546
VERSION     XP_053931546.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075571.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..330
                     /product="ankyrin repeat and SOCS box protein 12 isoform
                     X1"
                     /calculated_mol_wt=36372
     Region          <25..204
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          35..61
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          71..99
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(74..75,78..80,82..83,87,90,99,101,103,107..108,
                     111..113,115..116,120,123,132,134,136,140..141,144..146,
                     148..149,153,156)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          101..132
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          134..164
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          177..240
                     /region_name="Ank_4"
                     /note="Ankyrin repeats (many copies); pfam13637"
                     /db_xref="CDD:372654"
     Region          178..204
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          218..250
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..330
                     /gene="ASB12"
                     /coded_by="XM_054075571.1:591..1583"
                     /db_xref="GeneID:104066245"
ORIGIN      
        1 mgdrvkkmsl mditkmfyml qpredeedng eseelnqavr eddyqtldkl lsqdrykrii
       61 nrrsgwgvps tplrlaatkg hlrsmevlla hgaevdsldv kaqtplfmav snghrecvkv
      121 llaagaspvg siynncspll iaardgdvdi lqqlldhgae tnvqarlpew aansaacsgp
      181 lylaavyghl ecfkmlllyg adpnynctee rvisqikepk tllesclrhg crrefvklli
      241 dfganvylpn vpvhetaprs kglelllqar gnlrgwpqaw kqalislglv qvasnspsll
      301 pllpisltqa fpqalppfaa sletrvglly
//
LOCUS       XP_053931547             330 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat and SOCS box protein 12 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053931547
VERSION     XP_053931547.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075572.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..330
                     /product="ankyrin repeat and SOCS box protein 12 isoform
                     X1"
                     /calculated_mol_wt=36372
     Region          <25..204
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          35..61
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          71..99
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(74..75,78..80,82..83,87,90,99,101,103,107..108,
                     111..113,115..116,120,123,132,134,136,140..141,144..146,
                     148..149,153,156)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          101..132
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          134..164
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          177..240
                     /region_name="Ank_4"
                     /note="Ankyrin repeats (many copies); pfam13637"
                     /db_xref="CDD:372654"
     Region          178..204
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          218..250
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..330
                     /gene="ASB12"
                     /coded_by="XM_054075572.1:649..1641"
                     /db_xref="GeneID:104066245"
ORIGIN      
        1 mgdrvkkmsl mditkmfyml qpredeedng eseelnqavr eddyqtldkl lsqdrykrii
       61 nrrsgwgvps tplrlaatkg hlrsmevlla hgaevdsldv kaqtplfmav snghrecvkv
      121 llaagaspvg siynncspll iaardgdvdi lqqlldhgae tnvqarlpew aansaacsgp
      181 lylaavyghl ecfkmlllyg adpnynctee rvisqikepk tllesclrhg crrefvklli
      241 dfganvylpn vpvhetaprs kglelllqar gnlrgwpqaw kqalislglv qvasnspsll
      301 pllpisltqa fpqalppfaa sletrvglly
//
LOCUS       XP_053931548             330 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat and SOCS box protein 12 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053931548
VERSION     XP_053931548.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075573.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..330
                     /product="ankyrin repeat and SOCS box protein 12 isoform
                     X1"
                     /calculated_mol_wt=36372
     Region          <25..204
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          35..61
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          71..99
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(74..75,78..80,82..83,87,90,99,101,103,107..108,
                     111..113,115..116,120,123,132,134,136,140..141,144..146,
                     148..149,153,156)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          101..132
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          134..164
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          177..240
                     /region_name="Ank_4"
                     /note="Ankyrin repeats (many copies); pfam13637"
                     /db_xref="CDD:372654"
     Region          178..204
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          218..250
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..330
                     /gene="ASB12"
                     /coded_by="XM_054075573.1:504..1496"
                     /db_xref="GeneID:104066245"
ORIGIN      
        1 mgdrvkkmsl mditkmfyml qpredeedng eseelnqavr eddyqtldkl lsqdrykrii
       61 nrrsgwgvps tplrlaatkg hlrsmevlla hgaevdsldv kaqtplfmav snghrecvkv
      121 llaagaspvg siynncspll iaardgdvdi lqqlldhgae tnvqarlpew aansaacsgp
      181 lylaavyghl ecfkmlllyg adpnynctee rvisqikepk tllesclrhg crrefvklli
      241 dfganvylpn vpvhetaprs kglelllqar gnlrgwpqaw kqalislglv qvasnspsll
      301 pllpisltqa fpqalppfaa sletrvglly
//
LOCUS       XP_009567118             314 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat and SOCS box protein 12 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_009567118
VERSION     XP_009567118.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568823.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567118.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..314
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..314
                     /product="ankyrin repeat and SOCS box protein 12 isoform
                     X2"
                     /calculated_mol_wt=34946
     Region          <25..204
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          35..61
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          71..99
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(74..75,78..80,82..83,87,90,99,101,103,107..108,
                     111..113,115..116,120,123,132,134,136,140..141,144..146,
                     148..149,153,156)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          101..132
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          134..164
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          177..240
                     /region_name="Ank_4"
                     /note="Ankyrin repeats (many copies); pfam13637"
                     /db_xref="CDD:372654"
     Region          178..204
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          218..250
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          272..310
                     /region_name="SOCS_box"
                     /note="SOCS box; pfam07525"
                     /db_xref="CDD:462192"
     CDS             1..314
                     /gene="ASB12"
                     /coded_by="XM_009568823.2:405..1349"
                     /db_xref="GeneID:104066245"
ORIGIN      
        1 mgdrvkkmsl mditkmfyml qpredeedng eseelnqavr eddyqtldkl lsqdrykrii
       61 nrrsgwgvps tplrlaatkg hlrsmevlla hgaevdsldv kaqtplfmav snghrecvkv
      121 llaagaspvg siynncspll iaardgdvdi lqqlldhgae tnvqarlpew aansaacsgp
      181 lylaavyghl ecfkmlllyg adpnynctee rvisqikepk tllesclrhg crrefvklli
      241 dfganvylpn vpvhetaprs kglelllqar ahpkslmsqs rlvlrhllkq agclhavstl
      301 eiplvlvnyl rhql
//
LOCUS       XP_009559241             463 aa            linear   VRT 09-MAR-2023
DEFINITION  sushi repeat-containing protein SRPX2 [Cuculus canorus].
ACCESSION   XP_009559241
VERSION     XP_009559241.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009560946.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009559241.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..463
                     /product="sushi repeat-containing protein SRPX2"
                     /calculated_mol_wt=52032
     Region          <73..111
                     /region_name="CCP"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     cd00033"
                     /db_xref="CDD:153056"
     Region          120..175
                     /region_name="CCP"
                     /note="Complement control protein (CCP) modules (aka short
                     consensus repeats SCRs or SUSHI repeats) have been
                     identified in several proteins of the complement system;
                     cd00033"
                     /db_xref="CDD:153056"
     Site            order(130,148)
                     /site_type="active"
                     /note="receptor-ligand interactions [active]"
                     /db_xref="CDD:153056"
     Region          175..257
                     /region_name="HYR"
                     /note="HYR domain; pfam02494"
                     /db_xref="CDD:460572"
     Region          262..317
                     /region_name="Sushi"
                     /note="Sushi repeat (SCR repeat); pfam00084"
                     /db_xref="CDD:459664"
     Region          332..451
                     /region_name="DUF4174"
                     /note="Domain of unknown function (DUF4174); pfam13778"
                     /db_xref="CDD:463980"
     CDS             1..463
                     /gene="SRPX2"
                     /coded_by="XM_009560946.2:499..1890"
                     /db_xref="GeneID:104059295"
ORIGIN      
        1 maqetapill vvlarlvsst whegsgyyta eshtnevyve elppepaldy rrvpqwcatl
       61 nihrgeatcy sprgssyrss lgtrcelsct rgyrlvgpst vqclpsrrws gmaycrqirc
      121 hvlpavlrgs yvcsagvqmd srcdysclpg yqlegdrsri cmedgrwsgs epicvdmepp
      181 kircpdsrer iaepgkltat vywdpprvkd sadgiikrvm lrgpepgsef pegehviryt
      241 aydqaynras ckfsirvqvr rcpvlkppqn gylsctsdgn nygatceylc dggyerqgts
      301 lrvcqstqqw tgsqplcapm qintavnsat slldqfhekr rllvisapdp snryyklqis
      361 mlqqvacgld lrhvttielv gqpphevgri rehqlslsii eelrqflhlt rshfnavlld
      421 kagtdreryi spvnpdelfv fidtyllseq eaarraqsgd pce
//
LOCUS       XP_009560802             462 aa            linear   VRT 09-MAR-2023
DEFINITION  zinc finger protein ZIC 3 [Cuculus canorus].
ACCESSION   XP_009560802
VERSION     XP_009560802.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009562507.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009560802.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..462
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..462
                     /product="zinc finger protein ZIC 3"
                     /calculated_mol_wt=50060
     Region          239..284
                     /region_name="zf_ZIC"
                     /note="Zic proteins zinc finger domain; pfam18366"
                     /db_xref="CDD:436441"
     Region          296..316
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(301,303,305,307..308,311..312,315,331,333,337..338,
                     341..342,345,361,363,365,367..368,371..372,375)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          <318..402
                     /region_name="SFP1"
                     /note="Putative transcriptional repressor regulating G2/M
                     transition [Transcription / Cell division and chromosome
                     partitioning]; COG5189"
                     /db_xref="CDD:227516"
     Region          324..346
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          354..376
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          384..404
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..462
                     /gene="ZIC3"
                     /coded_by="XM_009562507.2:56..1444"
                     /db_xref="GeneID:104060682"
ORIGIN      
        1 mtmlldggpq fpalgvggfp aprhhempgr daaaggmglg pfgdsshaaa fklnaaphdl
       61 aagqssaftp qapgyasalg hhhhhhhhag qvpsyggaaa fnstrdflfr nrgsgiaeaa
      121 sgtaqhglfg gspgglhgpg gipdtpgyll fpglheqsps htspnghvdn gqmhlglrgd
      181 lfgrpdpyra vssprtdpya gaqfhnynhm nmnmgmnvaa hhhhhhhhgp gaffrymrqp
      241 ikqelsckwl desqlsrpkk scdrtfstmh elvthvtmeh vggpeqnnhi cywdecpreg
      301 ksfkakyklv nhirvhtgek pfpcpfpgcg kifarsenlk ihkrthtgek pfkcefegcd
      361 rrfanssdrk khmhvhtsdk pyickvcdks ythpsslrkh mkvhesqgsd sspaassgye
      421 sstppavgst gtkdsaktpp aalqsnpghn pglppnfnew yv
//
LOCUS       XP_053931550             336 aa            linear   VRT 09-MAR-2023
DEFINITION  ankyrin repeat domain-containing protein SOWAHD [Cuculus canorus].
ACCESSION   XP_053931550
VERSION     XP_053931550.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075575.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..336
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..336
                     /product="ankyrin repeat domain-containing protein SOWAHD"
                     /calculated_mol_wt=36915
     Region          <141..280
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          180..216
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          218..251
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     CDS             1..336
                     /gene="SOWAHD"
                     /coded_by="XM_054075575.1:95..1105"
                     /db_xref="GeneID:104064054"
ORIGIN      
        1 marheqeqgs mkkrvagiar mftlqegsqp qvsslarssh lwpaavgske rfhplqkmdt
       61 srsisrgsqg pgswgrtasr lsigpgstrr kelkeillqs nssnstvrfa atqktsnsss
      121 llaaphqeqk peqspevlsl aldplehewl ltvaqgdadn iirlldldps llnrrdfvtg
      181 ftvlhwlakh ghyesfiqvi shaqkkgyai nvniptasgg ltplhlaalq ghellikvlv
      241 gaygadsslr dhngrkawqy lradaprelk elagafeedl fqlcshntnn nckssreara
      301 gwdcvdsgae gntqrswsls tlrdfvahaf tflkgh
//
LOCUS       XP_009564617              70 aa            linear   VRT 09-MAR-2023
DEFINITION  NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1
            [Cuculus canorus].
ACCESSION   XP_009564617
VERSION     XP_009564617.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009566322.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..70
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..70
                     /product="NADH dehydrogenase [ubiquinone] 1 alpha
                     subcomplex subunit 1"
                     /calculated_mol_wt=8069
     Region          2..56
                     /region_name="MWFE"
                     /note="NADH-ubiquinone oxidoreductase MWFE subunit;
                     pfam15879"
                     /db_xref="CDD:464920"
     CDS             1..70
                     /gene="NDUFA1"
                     /coded_by="XM_009566322.2:85..297"
                     /db_xref="GeneID:104064032"
ORIGIN      
        1 mwyeilpgma imgvclsipg lstvfmhrws nggkekriar ypyqwtlmer drrvsgvnky
       61 yvskglenid
//
LOCUS       XP_053931551              51 aa            linear   VRT 09-MAR-2023
DEFINITION  60S ribosomal protein L39 [Cuculus canorus].
ACCESSION   XP_053931551
VERSION     XP_053931551.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075576.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..51
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..51
                     /product="60S ribosomal protein L39"
                     /calculated_mol_wt=6247
     Region          10..50
                     /region_name="Ribosomal_L39"
                     /note="Ribosomal L39 protein; pfam00832"
                     /db_xref="CDD:425894"
     CDS             1..51
                     /gene="RPL39"
                     /coded_by="XM_054075576.1:132..287"
                     /db_xref="GeneID:104064055"
ORIGIN      
        1 msshktfkik rflakkqkqn rpipqwirmk tgnkirynsk rrhwrrtklg l
//
LOCUS       XP_053931552             491 aa            linear   VRT 09-MAR-2023
DEFINITION  regulator of nonsense transcripts 3B [Cuculus canorus].
ACCESSION   XP_053931552
VERSION     XP_053931552.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075577.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..491
                     /product="regulator of nonsense transcripts 3B"
                     /calculated_mol_wt=58152
     Region          67..154
                     /region_name="RRM_like_Smg4_UPF3B"
                     /note="RNA recognition motif (RRM)-like Smg4_UPF3 domain
                     in up-frameshift suppressor 3 homolog B on chromosome X
                     (Upf3B); cd12728"
                     /db_xref="CDD:410127"
     Site            order(67..77,79..90,92..120,122..154)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410127"
     CDS             1..491
                     /gene="UPF3B"
                     /coded_by="XM_054075577.1:29..1504"
                     /db_xref="GeneID:104064056"
ORIGIN      
        1 mvwrgcgaap qpgmkedken arpkerrgpg allgtaaaag pgsgtdgrag gaeterlerp
       61 kdkketlskv virrlppslt keqleehlqp lpehdyfeff andsslyphm fsrayinfkn
      121 qedivlfrdr fdgyvfvdhk gqeyaaivef apfqkaakkk skkkdaktgt ieddpeykkf
      181 lesysaddek ltstpetlle eiearnkeli akkttpllnf lknkqrlree kreerrrrel
      241 erkrqreeer rkwkeeerrk rkeaeklkkv drcpekerdr skeepkikll kkpekdekdl
      301 ekkekskkle retlreekna ssasakrsdg etkeekakks edecvkdyrd rdrdferdre
      361 yeraqreklr rqeeerrrqk erfekekvfr rkeeevkker dllrekakks dltdftgsmd
      421 ksekvtkddk kedtikrdri rnkdrpamql yqpgarsrsr lcqyeenaak ptdqgadkkp
      481 esetsnakee e
//
LOCUS       XP_053931553              92 aa            linear   VRT 09-MAR-2023
DEFINITION  serine-rich and transmembrane domain-containing 2 [Cuculus
            canorus].
ACCESSION   XP_053931553
VERSION     XP_053931553.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075578.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..92
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..92
                     /product="serine-rich and transmembrane domain-containing
                     2"
                     /calculated_mol_wt=10345
     Region          19..87
                     /region_name="SRTM1"
                     /note="Serine-rich and transmembrane domain-containing
                     protein 1; pfam15872"
                     /db_xref="CDD:318153"
     CDS             1..92
                     /gene="SERTM2"
                     /coded_by="XM_054075578.1:1021..1299"
                     /db_xref="GeneID:128853146"
ORIGIN      
        1 mteiyfkfrg nltgrvhlpt latevdttad kysglyvymg lfltllaill illfsmllrl
       61 khvispitts pentenaqqf tdvemhsrip ti
//
LOCUS       XP_053931554             126 aa            linear   VRT 09-MAR-2023
DEFINITION  peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [Cuculus
            canorus].
ACCESSION   XP_053931554
VERSION     XP_053931554.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075579.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..126
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..126
                     /product="peptidyl-prolyl cis-trans isomerase
                     NIMA-interacting 4"
                     /calculated_mol_wt=12915
     Region          33..>126
                     /region_name="SurA"
                     /note="Peptidyl-prolyl isomerase, parvulin family
                     [Posttranslational modification, protein turnover,
                     chaperones]; COG0760"
                     /db_xref="CDD:440523"
     CDS             1..126
                     /gene="PIN4"
                     /coded_by="XM_054075579.1:110..490"
                     /db_xref="GeneID:104060496"
ORIGIN      
        1 mapkgkgagk agkgggggae ggaagtkggg savkvrhilc ekhskameal eklksglrfs
       61 evasqysedk arhggdlgwm trgsmvgpfq eaafalpvss idkpvytdpp vktkfgyhii
      121 mvegrk
//
LOCUS       XP_009570302             360 aa            linear   VRT 09-MAR-2023
DEFINITION  cytokine receptor common subunit gamma [Cuculus canorus].
ACCESSION   XP_009570302
VERSION     XP_009570302.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009572007.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009570302.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..360
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..360
                     /product="cytokine receptor common subunit gamma"
                     /calculated_mol_wt=41129
     Region          37..108
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cl21522"
                     /db_xref="CDD:473895"
     Region          129..221
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(129,190,211)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(212..213,215..216)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..360
                     /gene="IL2RG"
                     /coded_by="XM_009572007.2:58..1140"
                     /db_xref="GeneID:104069038"
ORIGIN      
        1 madatmlvls aflmpillll cglgpslaaa hsapgvecvv fneeymtctw gsretltany
       61 slyywyenrl pvveckhylq dqdvnigcrf nrseiiqfqp frvlvnasld grtleipskq
      121 mqlqdlvkpe apvnltihnm ssnqlqltwa spypkarcle havkyksnkd tswtehrvkg
      181 dvfsfpsvdy ekyytfyvrs kiniycgnsq lwsewsipvv wgsnstskgt veeqlhlfwi
      241 htvlipitsc llllvlvvll vrmervwvil mpripnpskn fdelfithng nfqewagvpk
      301 dveesfkpny sehicyvsel pskdsyeplw essnhpppvm pgalaapheh spyknsyvea
//
LOCUS       XP_053931556             565 aa            linear   VRT 09-MAR-2023
DEFINITION  fragile X messenger ribonucleoprotein 1 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053931556
VERSION     XP_053931556.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075581.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..565
                     /product="fragile X messenger ribonucleoprotein 1 isoform
                     X1"
                     /calculated_mol_wt=63576
     Region          1..55
                     /region_name="Tudor_Agenet_FMR1_rpt1"
                     /note="first Tudor-like Agenet domain found in synaptic
                     functional regulator FMR1 and similar proteins; cd20471"
                     /db_xref="CDD:410542"
     Site            order(10,14,16,32,36,38)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410542"
     Region          58..120
                     /region_name="Tudor_Agenet_FMR1_rpt2"
                     /note="second Tudor-like Agenet domain found in synaptic
                     functional regulator FMR1 and similar proteins; cd20474"
                     /db_xref="CDD:410545"
     Site            order(69,78,80,96,101,103)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410545"
     Region          123..199
                     /region_name="KH_I_FMR1_rpt1"
                     /note="first type I K homology (KH) RNA-binding domain
                     found in fragile X mental retardation protein 1 (FMR1) and
                     similar proteins; cd22506"
                     /db_xref="CDD:411934"
     Region          218..280
                     /region_name="KH_I_FMR1_rpt2"
                     /note="second type I K homology (KH) RNA-binding domain
                     found in fragile X mental retardation protein 1 (FMR1) and
                     similar proteins; cd22509"
                     /db_xref="CDD:411937"
     Site            order(228,230..232,234..238,241..242,245..246,252..255)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:411937"
     Region          281..358
                     /region_name="KH_I_FMR1_rpt3"
                     /note="third type I K homology (KH) RNA-binding domain
                     found in fragile X mental retardation protein 1 (FMR1) and
                     similar proteins; cd22512"
                     /db_xref="CDD:411940"
     Site            order(290..294,297,300..301,305,308..309,312..323,325)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:411940"
     Site            order(291,293..295,297..301,304..305,308..309,315..318)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:411940"
     Region          354..457
                     /region_name="FXMRP1_C_core"
                     /note="Fragile X-related 1 protein core C terminal;
                     pfam12235"
                     /db_xref="CDD:463501"
     Region          483..565
                     /region_name="FXMR_C2"
                     /note="Fragile X-related mental retardation protein
                     C-terminal region 2; pfam16098"
                     /db_xref="CDD:465020"
     CDS             1..565
                     /gene="FMR1"
                     /coded_by="XM_054075581.1:137..1834"
                     /db_xref="GeneID:104063041"
ORIGIN      
        1 meelvvevrg sngafykafv kdvhedsisv afennwqper qipfhdvrfp ppagynkdin
       61 esdevevysr anekepccww lakvrmikge fyvieyaacd atyneivtie rlrsvnpnkp
      121 atkdtfhkik lavpedlrqm cakesahkdf kkavgafsvt ydsenhqlii lsindvttkr
      181 anmlidmhfr slrtklslil rneeaskqle ssrqlasrfh eqfvvredlm glaigthgan
      241 iqqarkvpgv taidldedtc tfhiygedqd avkkarsyle faedviqvpr nlvgkvigkn
      301 gkliqeivdk sgvvrvriea endknipqee gmvpfvfvgt kdsitnatvl ldyhlnylke
      361 vdqlrlerlq ideqlrqiga tsrpppnrtd kekgymtddg pglgrgsrpy rnrghsrrgp
      421 gyasgtnsea snasetesdh rdelsdwsaa paeeerdnyl rrgdgrrrgg gargqggrgr
      481 ggfkgndeqs rtdnrqrnsr dakgrtadgs leiridcnne rsvhtktlqn tsnegsrlrt
      541 gkernqkkek adsadgqqpl vngvp
//
LOCUS       XP_053931557             553 aa            linear   VRT 09-MAR-2023
DEFINITION  fragile X messenger ribonucleoprotein 1 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053931557
VERSION     XP_053931557.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075582.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..553
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..553
                     /product="fragile X messenger ribonucleoprotein 1 isoform
                     X2"
                     /calculated_mol_wt=62427
     Region          1..55
                     /region_name="Tudor_Agenet_FMR1_rpt1"
                     /note="first Tudor-like Agenet domain found in synaptic
                     functional regulator FMR1 and similar proteins; cd20471"
                     /db_xref="CDD:410542"
     Site            order(10,14,16,32,36,38)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410542"
     Region          58..120
                     /region_name="Tudor_Agenet_FMR1_rpt2"
                     /note="second Tudor-like Agenet domain found in synaptic
                     functional regulator FMR1 and similar proteins; cd20474"
                     /db_xref="CDD:410545"
     Site            order(69,78,80,96,101,103)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410545"
     Region          123..199
                     /region_name="KH_I_FMR1_rpt1"
                     /note="first type I K homology (KH) RNA-binding domain
                     found in fragile X mental retardation protein 1 (FMR1) and
                     similar proteins; cd22506"
                     /db_xref="CDD:411934"
     Region          218..280
                     /region_name="KH_I_FMR1_rpt2"
                     /note="second type I K homology (KH) RNA-binding domain
                     found in fragile X mental retardation protein 1 (FMR1) and
                     similar proteins; cd22509"
                     /db_xref="CDD:411937"
     Site            order(228,230..232,234..238,241..242,245..246,252..255)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:411937"
     Region          281..358
                     /region_name="KH_I_FMR1_rpt3"
                     /note="third type I K homology (KH) RNA-binding domain
                     found in fragile X mental retardation protein 1 (FMR1) and
                     similar proteins; cd22512"
                     /db_xref="CDD:411940"
     Site            order(290..294,297,300..301,305,308..309,312..323,325)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:411940"
     Site            order(291,293..295,297..301,304..305,308..309,315..318)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:411940"
     Region          354..445
                     /region_name="FXMRP1_C_core"
                     /note="Fragile X-related 1 protein core C terminal;
                     pfam12235"
                     /db_xref="CDD:463501"
     Region          471..553
                     /region_name="FXMR_C2"
                     /note="Fragile X-related mental retardation protein
                     C-terminal region 2; pfam16098"
                     /db_xref="CDD:465020"
     CDS             1..553
                     /gene="FMR1"
                     /coded_by="XM_054075582.1:138..1799"
                     /db_xref="GeneID:104063041"
ORIGIN      
        1 meelvvevrg sngafykafv kdvhedsisv afennwqper qipfhdvrfp ppagynkdin
       61 esdevevysr anekepccww lakvrmikge fyvieyaacd atyneivtie rlrsvnpnkp
      121 atkdtfhkik lavpedlrqm cakesahkdf kkavgafsvt ydsenhqlii lsindvttkr
      181 anmlidmhfr slrtklslil rneeaskqle ssrqlasrfh eqfvvredlm glaigthgan
      241 iqqarkvpgv taidldedtc tfhiygedqd avkkarsyle faedviqvpr nlvgkvigkn
      301 gkliqeivdk sgvvrvriea endknipqee gmvpfvfvgt kdsitnatvl ldyhlnylke
      361 vdqlrlerlq ideqlrqiga tsrpppnrtd kekgymtddg pglgrgsrpy rnrghsrrgp
      421 gyasesdhrd elsdwsaapa eeerdnylrr gdgrrrggga rgqggrgrgg fkgndeqsrt
      481 dnrqrnsrda kgrtadgsle iridcnners vhtktlqnts negsrlrtgk ernqkkekad
      541 sadgqqplvn gvp
//
LOCUS       XP_053931558             548 aa            linear   VRT 09-MAR-2023
DEFINITION  fragile X messenger ribonucleoprotein 1 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053931558
VERSION     XP_053931558.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075583.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..548
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..548
                     /product="fragile X messenger ribonucleoprotein 1 isoform
                     X3"
                     /calculated_mol_wt=61567
     Region          1..55
                     /region_name="Tudor_Agenet_FMR1_rpt1"
                     /note="first Tudor-like Agenet domain found in synaptic
                     functional regulator FMR1 and similar proteins; cd20471"
                     /db_xref="CDD:410542"
     Site            order(10,14,16,32,36,38)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410542"
     Region          58..120
                     /region_name="Tudor_Agenet_FMR1_rpt2"
                     /note="second Tudor-like Agenet domain found in synaptic
                     functional regulator FMR1 and similar proteins; cd20474"
                     /db_xref="CDD:410545"
     Site            order(69,78,80,96,101,103)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410545"
     Region          123..199
                     /region_name="KH_I_FMR1_rpt1"
                     /note="first type I K homology (KH) RNA-binding domain
                     found in fragile X mental retardation protein 1 (FMR1) and
                     similar proteins; cd22506"
                     /db_xref="CDD:411934"
     Region          218..280
                     /region_name="KH_I_FMR1_rpt2"
                     /note="second type I K homology (KH) RNA-binding domain
                     found in fragile X mental retardation protein 1 (FMR1) and
                     similar proteins; cd22509"
                     /db_xref="CDD:411937"
     Site            order(228,230..232,234..238,241..242,245..246,252..255)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:411937"
     Region          281..358
                     /region_name="KH_I_FMR1_rpt3"
                     /note="third type I K homology (KH) RNA-binding domain
                     found in fragile X mental retardation protein 1 (FMR1) and
                     similar proteins; cd22512"
                     /db_xref="CDD:411940"
     Site            order(290..294,297,300..301,305,308..309,312..323,325)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:411940"
     Site            order(291,293..295,297..301,304..305,308..309,315..318)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:411940"
     Region          354..457
                     /region_name="FXMRP1_C_core"
                     /note="Fragile X-related 1 protein core C terminal;
                     pfam12235"
                     /db_xref="CDD:463501"
     Region          483..548
                     /region_name="FXMR_C2"
                     /note="Fragile X-related mental retardation protein
                     C-terminal region 2; pfam16098"
                     /db_xref="CDD:465020"
     CDS             1..548
                     /gene="FMR1"
                     /coded_by="XM_054075583.1:137..1783"
                     /db_xref="GeneID:104063041"
ORIGIN      
        1 meelvvevrg sngafykafv kdvhedsisv afennwqper qipfhdvrfp ppagynkdin
       61 esdevevysr anekepccww lakvrmikge fyvieyaacd atyneivtie rlrsvnpnkp
      121 atkdtfhkik lavpedlrqm cakesahkdf kkavgafsvt ydsenhqlii lsindvttkr
      181 anmlidmhfr slrtklslil rneeaskqle ssrqlasrfh eqfvvredlm glaigthgan
      241 iqqarkvpgv taidldedtc tfhiygedqd avkkarsyle faedviqvpr nlvgkvigkn
      301 gkliqeivdk sgvvrvriea endknipqee gmvpfvfvgt kdsitnatvl ldyhlnylke
      361 vdqlrlerlq ideqlrqiga tsrpppnrtd kekgymtddg pglgrgsrpy rnrghsrrgp
      421 gyasgtnsea snasetesdh rdelsdwsaa paeeerdnyl rrgdgrrrgg gargqggrgr
      481 ggfkgndeqs rtdnrqrnsr dakgrtadgs lentsnegsr lrtgkernqk kekadsadgq
      541 qplvngvp
//
LOCUS       XP_053931559             513 aa            linear   VRT 09-MAR-2023
DEFINITION  fragile X messenger ribonucleoprotein 1 isoform X4 [Cuculus
            canorus].
ACCESSION   XP_053931559
VERSION     XP_053931559.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075584.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..513
                     /product="fragile X messenger ribonucleoprotein 1 isoform
                     X4"
                     /calculated_mol_wt=57789
     Region          1..55
                     /region_name="Tudor_Agenet_FMR1_rpt1"
                     /note="first Tudor-like Agenet domain found in synaptic
                     functional regulator FMR1 and similar proteins; cd20471"
                     /db_xref="CDD:410542"
     Site            order(10,14,16,32,36,38)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410542"
     Region          58..120
                     /region_name="Tudor_Agenet_FMR1_rpt2"
                     /note="second Tudor-like Agenet domain found in synaptic
                     functional regulator FMR1 and similar proteins; cd20474"
                     /db_xref="CDD:410545"
     Site            order(69,78,80,96,101,103)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:410545"
     Region          123..199
                     /region_name="KH_I_FMR1_rpt1"
                     /note="first type I K homology (KH) RNA-binding domain
                     found in fragile X mental retardation protein 1 (FMR1) and
                     similar proteins; cd22506"
                     /db_xref="CDD:411934"
     Region          218..280
                     /region_name="KH_I_FMR1_rpt2"
                     /note="second type I K homology (KH) RNA-binding domain
                     found in fragile X mental retardation protein 1 (FMR1) and
                     similar proteins; cd22509"
                     /db_xref="CDD:411937"
     Site            order(228,230..232,234..238,241..242,245..246,252..255)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:411937"
     Region          281..358
                     /region_name="KH_I_FMR1_rpt3"
                     /note="third type I K homology (KH) RNA-binding domain
                     found in fragile X mental retardation protein 1 (FMR1) and
                     similar proteins; cd22512"
                     /db_xref="CDD:411940"
     Site            order(290..294,297,300..301,305,308..309,312..323,325)
                     /site_type="other"
                     /note="homodimer interface [polypeptide binding]"
                     /db_xref="CDD:411940"
     Site            order(291,293..295,297..301,304..305,308..309,315..318)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:411940"
     Region          354..457
                     /region_name="FXMRP1_C_core"
                     /note="Fragile X-related 1 protein core C terminal;
                     pfam12235"
                     /db_xref="CDD:463501"
     Region          483..>512
                     /region_name="FXMR_C2"
                     /note="Fragile X-related mental retardation protein
                     C-terminal region 2; pfam16098"
                     /db_xref="CDD:465020"
     CDS             1..513
                     /gene="FMR1"
                     /coded_by="XM_054075584.1:137..1678"
                     /db_xref="GeneID:104063041"
ORIGIN      
        1 meelvvevrg sngafykafv kdvhedsisv afennwqper qipfhdvrfp ppagynkdin
       61 esdevevysr anekepccww lakvrmikge fyvieyaacd atyneivtie rlrsvnpnkp
      121 atkdtfhkik lavpedlrqm cakesahkdf kkavgafsvt ydsenhqlii lsindvttkr
      181 anmlidmhfr slrtklslil rneeaskqle ssrqlasrfh eqfvvredlm glaigthgan
      241 iqqarkvpgv taidldedtc tfhiygedqd avkkarsyle faedviqvpr nlvgkvigkn
      301 gkliqeivdk sgvvrvriea endknipqee gmvpfvfvgt kdsitnatvl ldyhlnylke
      361 vdqlrlerlq ideqlrqiga tsrpppnrtd kekgymtddg pglgrgsrpy rnrghsrrgp
      421 gyasgtnsea snasetesdh rdelsdwsaa paeeerdnyl rrgdgrrrgg gargqggrgr
      481 ggfkgndeqs rtdnrqrnsr dakgrtadgs len
//
LOCUS       XP_053931560             515 aa            linear   VRT 09-MAR-2023
DEFINITION  H/ACA ribonucleoprotein complex subunit DKC1 [Cuculus canorus].
ACCESSION   XP_053931560
VERSION     XP_053931560.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075585.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..515
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..515
                     /product="H/ACA ribonucleoprotein complex subunit DKC1"
                     /calculated_mol_wt=57927
     Region          54..379
                     /region_name="CBF5"
                     /note="rRNA pseudouridine synthase, putative; TIGR00425"
                     /db_xref="CDD:273073"
     CDS             1..515
                     /gene="DKC1"
                     /coded_by="XM_054075585.1:68..1615"
                     /db_xref="GeneID:104069011"
ORIGIN      
        1 maegdgstvk krrkkekral adedvadiqh teeffikpes rvaqldtsqw plllknfdkl
       61 nvmtahytpl psganplkre isdyvrsgfi nldkpsnpss hevvawirri lrvektghsg
      121 tldpkvtgcl ivcieratrl vksqqsagke yvgiirlhna ieseaqlara ietltgalfq
      181 rppliaavkr qlrvrtiyes klveydperr lgifwvscea gtyirtlcvh lglllgvggq
      241 mqelrrvrsg ilgekdnmvt mhdvldaqwq ydnnkddsyl rrvilplekl ltshkrlvmk
      301 dsavnaicyg akimlpgvlr yedgielnqe ivvittkgea iclaialmtt avistcdhgi
      361 vakikrvime rdtyprkwgl gpkasqkkmm iqrglldkhg kpnestpdsw kkeyvdyrda
      421 skkeaaavpq pvsqlekapk rkresesese eavtppspat pppeelskke kkkkkkekka
      481 reaaesggeq iemttetstk kkkkkkqkev eesse
//
LOCUS       XP_009570271             466 aa            linear   VRT 09-MAR-2023
DEFINITION  55 kDa erythrocyte membrane protein [Cuculus canorus].
ACCESSION   XP_009570271
VERSION     XP_009570271.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009571976.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..466
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..466
                     /product="55 kDa erythrocyte membrane protein"
                     /calculated_mol_wt=52358
     Region          70..150
                     /region_name="PDZ_MPP1-like"
                     /note="PDZ domain of membrane palmitoylated protein1
                     (MPP1), and related domains; cd10830"
                     /db_xref="CDD:467266"
     Site            order(81..87,97,100,130,134,137..138)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467266"
     Region          162..223
                     /region_name="SH3_MPP1"
                     /note="Src Homology 3 domain of Membrane Protein,
                     Palmitoylated 1 (or MAGUK p55 subfamily member 1);
                     cd12080"
                     /db_xref="CDD:213013"
     Site            order(164,188..189)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:213013"
     Site            order(167,169,172,183,201..202,219,221..222)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:213013"
     Region          281..453
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..466
                     /gene="MPP1"
                     /coded_by="XM_009571976.2:57..1457"
                     /db_xref="GeneID:104069010"
ORIGIN      
        1 mtlksgrsas agsmrtalsd lylehllqnr akpeaitqsp naitediytn gsatlgspsh
       61 sngrevrkir lvqfekvtee pmgitlklne kqscmvarif hggmihrqgs lhvgdeiiei
      121 ngqsvsnhsv dqlqkmlket kgmvsikvip nqqsrlpalq mfmraqfdyd pqkdnlipck
      181 eaglkfqtgd viqiinkdds nwwqgrvegs ctesaglips pelqewrvas vtqssqsesp
      241 scspfgkkkk ckdkylakhs sifdqldvvs yeevvrlpaf krktlvliga sgvgrshikn
      301 allsnnpekf mypppyttrp qkknevdgkd yyfvsteemt rdisanefle fgsyqgnmfg
      361 tkfetvhkih qqdkvaildi epqtlkivrt aelspfivfi aptdkaeqse alqqlrkese
      421 sirsryahyf dlslvnngve eslqllqeaf eqacsspqwv pvswvy
//
LOCUS       XP_053931561             307 aa            linear   VRT 09-MAR-2023
DEFINITION  TLR adapter interacting with SLC15A4 on the lysosome [Cuculus
            canorus].
ACCESSION   XP_053931561
VERSION     XP_053931561.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075586.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..307
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..307
                     /product="TLR adapter interacting with SLC15A4 on the
                     lysosome"
                     /calculated_mol_wt=34333
     Region          1..293
                     /region_name="TASL"
                     /note="TLR adaptor interacting with SLC15A4 on the
                     lysosome; pfam15133"
                     /db_xref="CDD:434486"
     CDS             1..307
                     /gene="LOC104054316"
                     /coded_by="XM_054075586.1:1749..2672"
                     /db_xref="GeneID:104054316"
ORIGIN      
        1 mlaegiltql vykeschqdk phksyaskkd kegiwreklv ddpkikgfag grekqdetsa
       61 rsskmehrsv pqwrsvkevp vedqkslvka pispalcipk reqntkemdl ytswscnsiy
      121 qnypdlhigg drvgdhtcds gcvldhvcde lpdgpvllsi diplgqsplc ehpkklsmes
      181 lsgdeageks ivlreeplsn stlnkymesk vaelykqffe enltrcgsvt nlftcslirn
      241 slnqisfqis reqnietska tevllhslal fslrnatnrn ssefstpnlq isnsacmkks
      301 dtrgfts
//
LOCUS       XP_053931562             307 aa            linear   VRT 09-MAR-2023
DEFINITION  TLR adapter interacting with SLC15A4 on the lysosome [Cuculus
            canorus].
ACCESSION   XP_053931562
VERSION     XP_053931562.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075587.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..307
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..307
                     /product="TLR adapter interacting with SLC15A4 on the
                     lysosome"
                     /calculated_mol_wt=34333
     Region          1..293
                     /region_name="TASL"
                     /note="TLR adaptor interacting with SLC15A4 on the
                     lysosome; pfam15133"
                     /db_xref="CDD:434486"
     CDS             1..307
                     /gene="LOC104054316"
                     /coded_by="XM_054075587.1:1677..2600"
                     /db_xref="GeneID:104054316"
ORIGIN      
        1 mlaegiltql vykeschqdk phksyaskkd kegiwreklv ddpkikgfag grekqdetsa
       61 rsskmehrsv pqwrsvkevp vedqkslvka pispalcipk reqntkemdl ytswscnsiy
      121 qnypdlhigg drvgdhtcds gcvldhvcde lpdgpvllsi diplgqsplc ehpkklsmes
      181 lsgdeageks ivlreeplsn stlnkymesk vaelykqffe enltrcgsvt nlftcslirn
      241 slnqisfqis reqnietska tevllhslal fslrnatnrn ssefstpnlq isnsacmkks
      301 dtrgfts
//
LOCUS       XP_053931565             307 aa            linear   VRT 09-MAR-2023
DEFINITION  TLR adapter interacting with SLC15A4 on the lysosome [Cuculus
            canorus].
ACCESSION   XP_053931565
VERSION     XP_053931565.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075590.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..307
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..307
                     /product="TLR adapter interacting with SLC15A4 on the
                     lysosome"
                     /calculated_mol_wt=34333
     Region          1..293
                     /region_name="TASL"
                     /note="TLR adaptor interacting with SLC15A4 on the
                     lysosome; pfam15133"
                     /db_xref="CDD:434486"
     CDS             1..307
                     /gene="LOC104054316"
                     /coded_by="XM_054075590.1:1420..2343"
                     /db_xref="GeneID:104054316"
ORIGIN      
        1 mlaegiltql vykeschqdk phksyaskkd kegiwreklv ddpkikgfag grekqdetsa
       61 rsskmehrsv pqwrsvkevp vedqkslvka pispalcipk reqntkemdl ytswscnsiy
      121 qnypdlhigg drvgdhtcds gcvldhvcde lpdgpvllsi diplgqsplc ehpkklsmes
      181 lsgdeageks ivlreeplsn stlnkymesk vaelykqffe enltrcgsvt nlftcslirn
      241 slnqisfqis reqnietska tevllhslal fslrnatnrn ssefstpnlq isnsacmkks
      301 dtrgfts
//
LOCUS       XP_053931566             307 aa            linear   VRT 09-MAR-2023
DEFINITION  TLR adapter interacting with SLC15A4 on the lysosome [Cuculus
            canorus].
ACCESSION   XP_053931566
VERSION     XP_053931566.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075591.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..307
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..307
                     /product="TLR adapter interacting with SLC15A4 on the
                     lysosome"
                     /calculated_mol_wt=34333
     Region          1..293
                     /region_name="TASL"
                     /note="TLR adaptor interacting with SLC15A4 on the
                     lysosome; pfam15133"
                     /db_xref="CDD:434486"
     CDS             1..307
                     /gene="LOC104054316"
                     /coded_by="XM_054075591.1:1689..2612"
                     /db_xref="GeneID:104054316"
ORIGIN      
        1 mlaegiltql vykeschqdk phksyaskkd kegiwreklv ddpkikgfag grekqdetsa
       61 rsskmehrsv pqwrsvkevp vedqkslvka pispalcipk reqntkemdl ytswscnsiy
      121 qnypdlhigg drvgdhtcds gcvldhvcde lpdgpvllsi diplgqsplc ehpkklsmes
      181 lsgdeageks ivlreeplsn stlnkymesk vaelykqffe enltrcgsvt nlftcslirn
      241 slnqisfqis reqnietska tevllhslal fslrnatnrn ssefstpnlq isnsacmkks
      301 dtrgfts
//
LOCUS       XP_053931567             307 aa            linear   VRT 09-MAR-2023
DEFINITION  TLR adapter interacting with SLC15A4 on the lysosome [Cuculus
            canorus].
ACCESSION   XP_053931567
VERSION     XP_053931567.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075592.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..307
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..307
                     /product="TLR adapter interacting with SLC15A4 on the
                     lysosome"
                     /calculated_mol_wt=34333
     Region          1..293
                     /region_name="TASL"
                     /note="TLR adaptor interacting with SLC15A4 on the
                     lysosome; pfam15133"
                     /db_xref="CDD:434486"
     CDS             1..307
                     /gene="LOC104054316"
                     /coded_by="XM_054075592.1:2075..2998"
                     /db_xref="GeneID:104054316"
ORIGIN      
        1 mlaegiltql vykeschqdk phksyaskkd kegiwreklv ddpkikgfag grekqdetsa
       61 rsskmehrsv pqwrsvkevp vedqkslvka pispalcipk reqntkemdl ytswscnsiy
      121 qnypdlhigg drvgdhtcds gcvldhvcde lpdgpvllsi diplgqsplc ehpkklsmes
      181 lsgdeageks ivlreeplsn stlnkymesk vaelykqffe enltrcgsvt nlftcslirn
      241 slnqisfqis reqnietska tevllhslal fslrnatnrn ssefstpnlq isnsacmkks
      301 dtrgfts
//
LOCUS       XP_009553591             307 aa            linear   VRT 09-MAR-2023
DEFINITION  TLR adapter interacting with SLC15A4 on the lysosome [Cuculus
            canorus].
ACCESSION   XP_009553591
VERSION     XP_009553591.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009555296.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009553591.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..307
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..307
                     /product="TLR adapter interacting with SLC15A4 on the
                     lysosome"
                     /calculated_mol_wt=34333
     Region          1..293
                     /region_name="TASL"
                     /note="TLR adaptor interacting with SLC15A4 on the
                     lysosome; pfam15133"
                     /db_xref="CDD:434486"
     CDS             1..307
                     /gene="LOC104054316"
                     /coded_by="XM_009555296.2:593..1516"
                     /db_xref="GeneID:104054316"
ORIGIN      
        1 mlaegiltql vykeschqdk phksyaskkd kegiwreklv ddpkikgfag grekqdetsa
       61 rsskmehrsv pqwrsvkevp vedqkslvka pispalcipk reqntkemdl ytswscnsiy
      121 qnypdlhigg drvgdhtcds gcvldhvcde lpdgpvllsi diplgqsplc ehpkklsmes
      181 lsgdeageks ivlreeplsn stlnkymesk vaelykqffe enltrcgsvt nlftcslirn
      241 slnqisfqis reqnietska tevllhslal fslrnatnrn ssefstpnlq isnsacmkks
      301 dtrgfts
//
LOCUS       XP_053931568             307 aa            linear   VRT 09-MAR-2023
DEFINITION  TLR adapter interacting with SLC15A4 on the lysosome [Cuculus
            canorus].
ACCESSION   XP_053931568
VERSION     XP_053931568.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075593.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..307
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..307
                     /product="TLR adapter interacting with SLC15A4 on the
                     lysosome"
                     /calculated_mol_wt=34333
     Region          1..293
                     /region_name="TASL"
                     /note="TLR adaptor interacting with SLC15A4 on the
                     lysosome; pfam15133"
                     /db_xref="CDD:434486"
     CDS             1..307
                     /gene="LOC104054316"
                     /coded_by="XM_054075593.1:1576..2499"
                     /db_xref="GeneID:104054316"
ORIGIN      
        1 mlaegiltql vykeschqdk phksyaskkd kegiwreklv ddpkikgfag grekqdetsa
       61 rsskmehrsv pqwrsvkevp vedqkslvka pispalcipk reqntkemdl ytswscnsiy
      121 qnypdlhigg drvgdhtcds gcvldhvcde lpdgpvllsi diplgqsplc ehpkklsmes
      181 lsgdeageks ivlreeplsn stlnkymesk vaelykqffe enltrcgsvt nlftcslirn
      241 slnqisfqis reqnietska tevllhslal fslrnatnrn ssefstpnlq isnsacmkks
      301 dtrgfts
//
LOCUS       XP_053931569             307 aa            linear   VRT 09-MAR-2023
DEFINITION  TLR adapter interacting with SLC15A4 on the lysosome [Cuculus
            canorus].
ACCESSION   XP_053931569
VERSION     XP_053931569.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075594.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..307
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..307
                     /product="TLR adapter interacting with SLC15A4 on the
                     lysosome"
                     /calculated_mol_wt=34333
     Region          1..293
                     /region_name="TASL"
                     /note="TLR adaptor interacting with SLC15A4 on the
                     lysosome; pfam15133"
                     /db_xref="CDD:434486"
     CDS             1..307
                     /gene="LOC104054316"
                     /coded_by="XM_054075594.1:1521..2444"
                     /db_xref="GeneID:104054316"
ORIGIN      
        1 mlaegiltql vykeschqdk phksyaskkd kegiwreklv ddpkikgfag grekqdetsa
       61 rsskmehrsv pqwrsvkevp vedqkslvka pispalcipk reqntkemdl ytswscnsiy
      121 qnypdlhigg drvgdhtcds gcvldhvcde lpdgpvllsi diplgqsplc ehpkklsmes
      181 lsgdeageks ivlreeplsn stlnkymesk vaelykqffe enltrcgsvt nlftcslirn
      241 slnqisfqis reqnietska tevllhslal fslrnatnrn ssefstpnlq isnsacmkks
      301 dtrgfts
//
LOCUS       XP_053931570             307 aa            linear   VRT 09-MAR-2023
DEFINITION  TLR adapter interacting with SLC15A4 on the lysosome [Cuculus
            canorus].
ACCESSION   XP_053931570
VERSION     XP_053931570.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075595.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..307
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..307
                     /product="TLR adapter interacting with SLC15A4 on the
                     lysosome"
                     /calculated_mol_wt=34333
     Region          1..293
                     /region_name="TASL"
                     /note="TLR adaptor interacting with SLC15A4 on the
                     lysosome; pfam15133"
                     /db_xref="CDD:434486"
     CDS             1..307
                     /gene="LOC104054316"
                     /coded_by="XM_054075595.1:1425..2348"
                     /db_xref="GeneID:104054316"
ORIGIN      
        1 mlaegiltql vykeschqdk phksyaskkd kegiwreklv ddpkikgfag grekqdetsa
       61 rsskmehrsv pqwrsvkevp vedqkslvka pispalcipk reqntkemdl ytswscnsiy
      121 qnypdlhigg drvgdhtcds gcvldhvcde lpdgpvllsi diplgqsplc ehpkklsmes
      181 lsgdeageks ivlreeplsn stlnkymesk vaelykqffe enltrcgsvt nlftcslirn
      241 slnqisfqis reqnietska tevllhslal fslrnatnrn ssefstpnlq isnsacmkks
      301 dtrgfts
//
LOCUS       XP_053931571             406 aa            linear   VRT 09-MAR-2023
DEFINITION  G2/mitotic-specific cyclin-B3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931571
VERSION     XP_053931571.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075596.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..406
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..406
                     /product="G2/mitotic-specific cyclin-B3 isoform X1"
                     /calculated_mol_wt=46522
     Region          133..274
                     /region_name="CYCLIN_CCNB3_rpt1"
                     /note="first cyclin box found in G2/mitotic-specific
                     cyclin-B3 (CCNB3) and similar proteins; cd20508"
                     /db_xref="CDD:410212"
     Site            order(231..232,235,243..244,261,264..265)
                     /site_type="other"
                     /note="putative CDK interface [polypeptide binding]"
                     /db_xref="CDD:410212"
     Region          278..390
                     /region_name="CYCLIN_CCNB3_rpt2"
                     /note="second cyclin box found in G2/mitotic-specific
                     cyclin-B3 (CCNB3) and similar proteins; cd20510"
                     /db_xref="CDD:410214"
     CDS             1..406
                     /gene="CCNB3"
                     /coded_by="XM_054075596.1:52..1272"
                     /db_xref="GeneID:104060520"
ORIGIN      
        1 mplsrnakvl stkqprvska nptaenvnpe klllqeescq tkrslsspqg gpkkrsafgd
       61 ltnahknhvv sgkkeavkvv lqknhtaqgv arnneinlqk smkktpptev paeskedptp
      121 ekpvpeqvpa vedidkeqlg dpyanaeyak eifeymrere ekfilpnyme kqsdisrdmr
      181 ailvdwmvev qenfelnhet lylavklvdh ylvevvsmrd klqligctai liaskfeery
      241 ppcvddflyi cddaykreel iameisiltt lkfdinipip yrflrrfakc arasmetltl
      301 arflcemtlq eydyaqesps klaascllla ltmknlggwt ptleyysgyr aqdlhplvkr
      361 lnflltyqpr dklkavrtky shrvffevak ampmdmlkle eilksc
//
LOCUS       XP_053931572             406 aa            linear   VRT 09-MAR-2023
DEFINITION  G2/mitotic-specific cyclin-B3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931572
VERSION     XP_053931572.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075597.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..406
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..406
                     /product="G2/mitotic-specific cyclin-B3 isoform X1"
                     /calculated_mol_wt=46522
     Region          133..274
                     /region_name="CYCLIN_CCNB3_rpt1"
                     /note="first cyclin box found in G2/mitotic-specific
                     cyclin-B3 (CCNB3) and similar proteins; cd20508"
                     /db_xref="CDD:410212"
     Site            order(231..232,235,243..244,261,264..265)
                     /site_type="other"
                     /note="putative CDK interface [polypeptide binding]"
                     /db_xref="CDD:410212"
     Region          278..390
                     /region_name="CYCLIN_CCNB3_rpt2"
                     /note="second cyclin box found in G2/mitotic-specific
                     cyclin-B3 (CCNB3) and similar proteins; cd20510"
                     /db_xref="CDD:410214"
     CDS             1..406
                     /gene="CCNB3"
                     /coded_by="XM_054075597.1:43..1263"
                     /db_xref="GeneID:104060520"
ORIGIN      
        1 mplsrnakvl stkqprvska nptaenvnpe klllqeescq tkrslsspqg gpkkrsafgd
       61 ltnahknhvv sgkkeavkvv lqknhtaqgv arnneinlqk smkktpptev paeskedptp
      121 ekpvpeqvpa vedidkeqlg dpyanaeyak eifeymrere ekfilpnyme kqsdisrdmr
      181 ailvdwmvev qenfelnhet lylavklvdh ylvevvsmrd klqligctai liaskfeery
      241 ppcvddflyi cddaykreel iameisiltt lkfdinipip yrflrrfakc arasmetltl
      301 arflcemtlq eydyaqesps klaascllla ltmknlggwt ptleyysgyr aqdlhplvkr
      361 lnflltyqpr dklkavrtky shrvffevak ampmdmlkle eilksc
//
LOCUS       XP_053931573             402 aa            linear   VRT 09-MAR-2023
DEFINITION  G2/mitotic-specific cyclin-B3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931573
VERSION     XP_053931573.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075598.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..402
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..402
                     /product="G2/mitotic-specific cyclin-B3 isoform X2"
                     /calculated_mol_wt=46054
     Region          129..270
                     /region_name="CYCLIN_CCNB3_rpt1"
                     /note="first cyclin box found in G2/mitotic-specific
                     cyclin-B3 (CCNB3) and similar proteins; cd20508"
                     /db_xref="CDD:410212"
     Site            order(227..228,231,239..240,257,260..261)
                     /site_type="other"
                     /note="putative CDK interface [polypeptide binding]"
                     /db_xref="CDD:410212"
     Region          274..386
                     /region_name="CYCLIN_CCNB3_rpt2"
                     /note="second cyclin box found in G2/mitotic-specific
                     cyclin-B3 (CCNB3) and similar proteins; cd20510"
                     /db_xref="CDD:410214"
     CDS             1..402
                     /gene="CCNB3"
                     /coded_by="XM_054075598.1:61..1269"
                     /db_xref="GeneID:104060520"
ORIGIN      
        1 mplsrnakvl stkqprvska nptaenvnpe keescqtkrs lsspqggpkk rsafgdltna
       61 hknhvvsgkk eavkvvlqkn htaqgvarnn einlqksmkk tpptevpaes kedptpekpv
      121 peqvpavedi dkeqlgdpya naeyakeife ymrereekfi lpnymekqsd isrdmrailv
      181 dwmvevqenf elnhetlyla vklvdhylve vvsmrdklql igctailias kfeeryppcv
      241 ddflyicdda ykreeliame isilttlkfd inipipyrfl rrfakcaras metltlarfl
      301 cemtlqeydy aqespsklaa sclllaltmk nlggwtptle yysgyraqdl hplvkrlnfl
      361 ltyqprdklk avrtkyshrv ffevakampm dmlkleeilk sc
//
LOCUS       XP_053931575             402 aa            linear   VRT 09-MAR-2023
DEFINITION  G2/mitotic-specific cyclin-B3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931575
VERSION     XP_053931575.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075600.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..402
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..402
                     /product="G2/mitotic-specific cyclin-B3 isoform X2"
                     /calculated_mol_wt=46054
     Region          129..270
                     /region_name="CYCLIN_CCNB3_rpt1"
                     /note="first cyclin box found in G2/mitotic-specific
                     cyclin-B3 (CCNB3) and similar proteins; cd20508"
                     /db_xref="CDD:410212"
     Site            order(227..228,231,239..240,257,260..261)
                     /site_type="other"
                     /note="putative CDK interface [polypeptide binding]"
                     /db_xref="CDD:410212"
     Region          274..386
                     /region_name="CYCLIN_CCNB3_rpt2"
                     /note="second cyclin box found in G2/mitotic-specific
                     cyclin-B3 (CCNB3) and similar proteins; cd20510"
                     /db_xref="CDD:410214"
     CDS             1..402
                     /gene="CCNB3"
                     /coded_by="XM_054075600.1:61..1269"
                     /db_xref="GeneID:104060520"
ORIGIN      
        1 mplsrnakvl stkqprvska nptaenvnpe keescqtkrs lsspqggpkk rsafgdltna
       61 hknhvvsgkk eavkvvlqkn htaqgvarnn einlqksmkk tpptevpaes kedptpekpv
      121 peqvpavedi dkeqlgdpya naeyakeife ymrereekfi lpnymekqsd isrdmrailv
      181 dwmvevqenf elnhetlyla vklvdhylve vvsmrdklql igctailias kfeeryppcv
      241 ddflyicdda ykreeliame isilttlkfd inipipyrfl rrfakcaras metltlarfl
      301 cemtlqeydy aqespsklaa sclllaltmk nlggwtptle yysgyraqdl hplvkrlnfl
      361 ltyqprdklk avrtkyshrv ffevakampm dmlkleeilk sc
//
LOCUS       XP_053931576             360 aa            linear   VRT 09-MAR-2023
DEFINITION  G2/mitotic-specific cyclin-B3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931576
VERSION     XP_053931576.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075601.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..360
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..360
                     /product="G2/mitotic-specific cyclin-B3 isoform X3"
                     /calculated_mol_wt=41233
     Region          133..228
                     /region_name="CYCLIN_SF"
                     /note="Cyclin box fold superfamily; cl40454"
                     /db_xref="CDD:477360"
     Region          232..344
                     /region_name="CYCLIN_CCNB3_rpt2"
                     /note="second cyclin box found in G2/mitotic-specific
                     cyclin-B3 (CCNB3) and similar proteins; cd20510"
                     /db_xref="CDD:410214"
     CDS             1..360
                     /gene="CCNB3"
                     /coded_by="XM_054075601.1:219..1301"
                     /db_xref="GeneID:104060520"
ORIGIN      
        1 mplsrnakvl stkqprvska nptaenvnpe klllqeescq tkrslsspqg gpkkrsafgd
       61 ltnahknhvv sgkkeavkvv lqknhtaqgv arnneinlqk smkktpptev paeskedptp
      121 ekpvpeqvpa vedidkeqlg dpyanaeyak eifeymrere ekfilpnyme kqsdisrdmr
      181 ailvdwmvev qeryppcvdd flyicddayk reeliameis ilttlkfdin ipipyrflrr
      241 fakcarasme tltlarflce mtlqeydyaq espsklaasc lllaltmknl ggwtptleyy
      301 sgyraqdlhp lvkrlnfllt yqprdklkav rtkyshrvff evakampmdm lkleeilksc
//
LOCUS       XP_053931577             408 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP-ribosylation factor-like protein 13A isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053931577
VERSION     XP_053931577.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075602.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..408
                     /product="ADP-ribosylation factor-like protein 13A isoform
                     X1"
                     /calculated_mol_wt=44395
     Region          73..237
                     /region_name="P-loop containing Nucleoside Triphosphate
                     Hydrolases"
                     /note="Members of the P-loop NTPase domain superfamily are
                     characterized by a conserved nucleotide phosphate-binding
                     motif, also referred to as the Walker A motif
                     (GxxxxGK[S/T], where x is any residue), and the Walker B
                     motif (hhhh[D/E], where h is a...; cl38936"
                     /db_xref="CDD:476819"
     Site            78..85
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206648"
     Site            order(80..86,122,178..179,181,214..216)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206648"
     Site            100
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206648"
     Site            104..106
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206648"
     Site            119..122
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206648"
     Site            order(121..122,138..139)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206648"
     Site            178..181
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206648"
     Site            214..216
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206648"
     CDS             1..408
                     /gene="ARL13A"
                     /coded_by="XM_054075602.1:17..1243"
                     /db_xref="GeneID:104059299"
ORIGIN      
        1 mqccvvppst agcpvalhvp aatgpgrptr ikkavrspee rpflhtglps mfhlfshcws
       61 wlqaiqepir kvtllvvgld nagktsvimd ieragevlpa vqpgqtrlrv drfevtlvdl
      121 pggqrsrstw rshysaahgl lfvldssdla rmeevrkvls rvlshpdvsg kpllllankq
      181 dataallpce lierlclerl vnencspcri epcaarrdhp igparttlqg lrwllraipa
      241 tplpppsarv ararpptrrd plppgedtrd gaaktgehrp irhllpveet tkgpgrrkrk
      301 vkvrkkssgq pspveepegp ggvgdsraga aggllppnrv gqeeptltvm atphpgkswc
      361 yghywhqdpq thpigwfgtq qggstlgyws lpsplallsd qlsrvmgi
//
LOCUS       XP_053931578             358 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP-ribosylation factor-like protein 13A isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053931578
VERSION     XP_053931578.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075603.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..358
                     /product="ADP-ribosylation factor-like protein 13A isoform
                     X2"
                     /calculated_mol_wt=39194
     Region          23..187
                     /region_name="P-loop containing Nucleoside Triphosphate
                     Hydrolases"
                     /note="Members of the P-loop NTPase domain superfamily are
                     characterized by a conserved nucleotide phosphate-binding
                     motif, also referred to as the Walker A motif
                     (GxxxxGK[S/T], where x is any residue), and the Walker B
                     motif (hhhh[D/E], where h is a...; cl38936"
                     /db_xref="CDD:476819"
     Site            28..35
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206648"
     Site            order(30..36,72,128..129,131,164..166)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206648"
     Site            50
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206648"
     Site            54..56
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206648"
     Site            69..72
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206648"
     Site            order(71..72,88..89)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206648"
     Site            128..131
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206648"
     Site            164..166
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206648"
     CDS             1..358
                     /gene="ARL13A"
                     /coded_by="XM_054075603.1:95..1171"
                     /db_xref="GeneID:104059299"
ORIGIN      
        1 mfhlfshcws wlqaiqepir kvtllvvgld nagktsvimd ieragevlpa vqpgqtrlrv
       61 drfevtlvdl pggqrsrstw rshysaahgl lfvldssdla rmeevrkvls rvlshpdvsg
      121 kpllllankq dataallpce lierlclerl vnencspcri epcaarrdhp igparttlqg
      181 lrwllraipa tplpppsarv ararpptrrd plppgedtrd gaaktgehrp irhllpveet
      241 tkgpgrrkrk vkvrkkssgq pspveepegp ggvgdsraga aggllppnrv gqeeptltvm
      301 atphpgkswc yghywhqdpq thpigwfgtq qggstlgyws lpsplallsd qlsrvmgi
//
LOCUS       XP_053931579             358 aa            linear   VRT 09-MAR-2023
DEFINITION  ADP-ribosylation factor-like protein 13A isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053931579
VERSION     XP_053931579.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075604.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..358
                     /product="ADP-ribosylation factor-like protein 13A isoform
                     X2"
                     /calculated_mol_wt=39194
     Region          23..187
                     /region_name="P-loop containing Nucleoside Triphosphate
                     Hydrolases"
                     /note="Members of the P-loop NTPase domain superfamily are
                     characterized by a conserved nucleotide phosphate-binding
                     motif, also referred to as the Walker A motif
                     (GxxxxGK[S/T], where x is any residue), and the Walker B
                     motif (hhhh[D/E], where h is a...; cl38936"
                     /db_xref="CDD:476819"
     Site            28..35
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206648"
     Site            order(30..36,72,128..129,131,164..166)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206648"
     Site            50
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206648"
     Site            54..56
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206648"
     Site            69..72
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206648"
     Site            order(71..72,88..89)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206648"
     Site            128..131
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206648"
     Site            164..166
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206648"
     CDS             1..358
                     /gene="ARL13A"
                     /coded_by="XM_054075604.1:212..1288"
                     /db_xref="GeneID:104059299"
ORIGIN      
        1 mfhlfshcws wlqaiqepir kvtllvvgld nagktsvimd ieragevlpa vqpgqtrlrv
       61 drfevtlvdl pggqrsrstw rshysaahgl lfvldssdla rmeevrkvls rvlshpdvsg
      121 kpllllankq dataallpce lierlclerl vnencspcri epcaarrdhp igparttlqg
      181 lrwllraipa tplpppsarv ararpptrrd plppgedtrd gaaktgehrp irhllpveet
      241 tkgpgrrkrk vkvrkkssgq pspveepegp ggvgdsraga aggllppnrv gqeeptltvm
      301 atphpgkswc yghywhqdpq thpigwfgtq qggstlgyws lpsplallsd qlsrvmgi
//
LOCUS       XP_009553587             652 aa            linear   VRT 09-MAR-2023
DEFINITION  rab proteins geranylgeranyltransferase component A 1 [Cuculus
            canorus].
ACCESSION   XP_009553587
VERSION     XP_009553587.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009555292.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009553587.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..652
                     /product="rab proteins geranylgeranyltransferase component
                     A 1"
                     /calculated_mol_wt=72267
     Region          6..521
                     /region_name="Rossmann-fold NAD(P)(+)-binding proteins"
                     /note="A large family of proteins that share a
                     Rossmann-fold NAD(P)H/NAD(P)(+) binding (NADB) domain. The
                     NADB domain is found in numerous dehydrogenases of
                     metabolic pathways such as glycolysis, and many other
                     redox enzymes. NAD binding involves numerous...; cl21454"
                     /db_xref="CDD:473865"
     CDS             1..652
                     /gene="CHM"
                     /coded_by="XM_009555292.2:24..1982"
                     /db_xref="GeneID:104054312"
ORIGIN      
        1 madnlpcefd vvvigtglpe sivaaacari gqsvlhldsr nyyggnwasf sfsgllswik
       61 enqqktdtsd ecedwrklil dneevislsk kdktiqnved fcfgdqdsak dveeagalsk
      121 lpvfgaaeae gvaeesekdc pptesadtes repekaadte pasaaegkde eitpenegsr
      181 stalgdstld lgkaedasse isapepkrit ysqivregrr fnidlvskll ysrgllidll
      241 iksnvsryae fknatrilaf rdgkveqvpc sradvfnsrq ltmvekrmlm kfltfcleye
      301 qhpdeyqdye sstfaqflrt rkltpslqhf ilhsiamvse tdcstleglq atkkflqclg
      361 rygntpflfp lygqgeipqc fcrmcavfgg iyclrhpvqc lvvdkgsgrc kaivdhfgqr
      421 isakyfived sylsdsvctn vhyrqisrav litdrsvlnt dseqqvsilt vppmevgkpa
      481 vcvielcsst mtcmkdtylv hltcpstnta redlepavqk lfnlnteket eneelekpkv
      541 lwavyfnmrd ssgidkssyn slplnvyvcs gpdsalgndc avkqaetifr emfpteefcp
      601 pspnpediiy dedgiapeea glsnspetkp dtsveegsse gsaalkkedn ed
//
LOCUS       XP_009560590             378 aa            linear   VRT 09-MAR-2023
DEFINITION  SAM and SH3 domain-containing protein 3 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_009560590
VERSION     XP_009560590.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009562295.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009560590.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..378
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..378
                     /product="SAM and SH3 domain-containing protein 3 isoform
                     X1"
                     /calculated_mol_wt=41454
     Region          20..174
                     /region_name="SLY"
                     /note="Lymphocyte signaling adaptor protein; pfam12485"
                     /db_xref="CDD:463602"
     Region          176..231
                     /region_name="SH3_SASH3"
                     /note="Src homology 3 domain of Sam And SH3 Domain
                     Containing Protein 3; cd11968"
                     /db_xref="CDD:212901"
     Site            order(182,184,187,193,211..212,225,227..228)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212901"
     Region          249..316
                     /region_name="SAM_SASH3"
                     /note="SAM domain of SASH3 subfamily; cd09560"
                     /db_xref="CDD:188959"
     CDS             1..378
                     /gene="SASH3"
                     /coded_by="XM_009562295.2:608..1744"
                     /db_xref="GeneID:104060495"
ORIGIN      
        1 mlrrkpsnag dkepghkkls lqrsssfkdf akckvsspap sekefnleen ipedesssas
       61 pddaarssgm klskkwravi srtmnrkmgr mavkalaegk qggveeeesp gplspasste
      121 epshekvpls ylemeedghp sisrqlstgs evsspgphrd slqlesgpay tgpfcgrarv
      181 htdftpspyd kdslklrkgd iigiiekppa gtwtgllnnr vgsfkfiyvd iipeetapvr
      241 ksrgsskskr lkpktlhell erinlqehts tlllngyqtl edfkelreth lnelnitdpq
      301 hrvklltaae llldydtase peegdnseaq psplepkedi prdsgcfegs etldssreea
      361 elgapegqlq alslaesp
//
LOCUS       XP_053931581             377 aa            linear   VRT 09-MAR-2023
DEFINITION  SAM and SH3 domain-containing protein 3 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053931581
VERSION     XP_053931581.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075606.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..377
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..377
                     /product="SAM and SH3 domain-containing protein 3 isoform
                     X2"
                     /calculated_mol_wt=41383
     Region          20..174
                     /region_name="SLY"
                     /note="Lymphocyte signaling adaptor protein; pfam12485"
                     /db_xref="CDD:463602"
     Region          176..231
                     /region_name="SH3_SASH3"
                     /note="Src homology 3 domain of Sam And SH3 Domain
                     Containing Protein 3; cd11968"
                     /db_xref="CDD:212901"
     Site            order(182,184,187,193,211..212,225,227..228)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212901"
     Region          249..316
                     /region_name="SAM_SASH3"
                     /note="SAM domain of SASH3 subfamily; cd09560"
                     /db_xref="CDD:188959"
     CDS             1..377
                     /gene="SASH3"
                     /coded_by="XM_054075606.1:605..1738"
                     /db_xref="GeneID:104060495"
ORIGIN      
        1 mlrrkpsnag dkepghkkls lqrsssfkdf akckvsspap sekefnleen ipedesssas
       61 pddaarssgm klskkwravi srtmnrkmgr mavkalaegk qggveeeesp gplspasste
      121 epshekvpls ylemeedghp sisrqlstgs evsspgphrd slqlesgpay tgpfcgrarv
      181 htdftpspyd kdslklrkgd iigiiekppa gtwtgllnnr vgsfkfiyvd iipeetapvr
      241 ksrgsskskr lkpktlhell erinlqehts tlllngyqtl edfkelreth lnelnitdpq
      301 hrvklltaae llldydtsep eegdnseaqp splepkedip rdsgcfegse tldssreeae
      361 lgapegqlqa lslaesp
//
LOCUS       XP_053931582             377 aa            linear   VRT 09-MAR-2023
DEFINITION  SAM and SH3 domain-containing protein 3 isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053931582
VERSION     XP_053931582.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075607.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..377
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..377
                     /product="SAM and SH3 domain-containing protein 3 isoform
                     X3"
                     /calculated_mol_wt=41326
     Region          20..173
                     /region_name="SLY"
                     /note="Lymphocyte signaling adaptor protein; pfam12485"
                     /db_xref="CDD:463602"
     Region          175..230
                     /region_name="SH3_SASH3"
                     /note="Src homology 3 domain of Sam And SH3 Domain
                     Containing Protein 3; cd11968"
                     /db_xref="CDD:212901"
     Site            order(181,183,186,192,210..211,224,226..227)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212901"
     Region          248..315
                     /region_name="SAM_SASH3"
                     /note="SAM domain of SASH3 subfamily; cd09560"
                     /db_xref="CDD:188959"
     CDS             1..377
                     /gene="SASH3"
                     /coded_by="XM_054075607.1:609..1742"
                     /db_xref="GeneID:104060495"
ORIGIN      
        1 mlrrkpsnag dkepghkkls lqrsssfkdf akckvsspap sekefnleen ipedesssas
       61 pddaarssgm klskkwravi srtmnrkmgr mavkalaegk ggveeeespg plspasstee
      121 pshekvplsy lemeedghps isrqlstgse vsspgphrds lqlesgpayt gpfcgrarvh
      181 tdftpspydk dslklrkgdi igiiekppag twtgllnnrv gsfkfiyvdi ipeetapvrk
      241 srgsskskrl kpktlhelle rinlqehtst lllngyqtle dfkelrethl nelnitdpqh
      301 rvklltaael lldydtasep eegdnseaqp splepkedip rdsgcfegse tldssreeae
      361 lgapegqlqa lslaesp
//
LOCUS       XP_053931583             739 aa            linear   VRT 09-MAR-2023
DEFINITION  U3 small nucleolar RNA-associated protein 14 homolog A [Cuculus
            canorus].
ACCESSION   XP_053931583
VERSION     XP_053931583.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075608.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..739
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..739
                     /product="U3 small nucleolar RNA-associated protein 14
                     homolog A"
                     /calculated_mol_wt=83034
     Region          30..703
                     /region_name="Utp14"
                     /note="Utp14 protein; pfam04615"
                     /db_xref="CDD:461368"
     CDS             1..739
                     /gene="UTP14A"
                     /coded_by="XM_054075608.1:191..2410"
                     /db_xref="GeneID:104060511"
ORIGIN      
        1 maedwlgvea apsasdgeee gqedderrhq qlleavssls grrrrklaer teasvqvsef
       61 nvsckgagek lvlsellqpi rpksalssvk kelnrvkqkk avelplskee aqrvvreaay
      121 vgtskdvgkw qqvvlqnrra eqlvfplkqe iatvvpleqv astwkprtpl eqeifgllhk
      181 tqqptvdpll tpeetaslqa msleearqrr aelqkaralq syyeakarre krikskkyhr
      241 vlkkskrrka lkefeqlhks dpeaalakle eleqlrmqer mslkhqnkgk warsraimak
      301 ydlearkamq eqlarnkelm qkvrvelpee eeeagdmpek dlasvtipmg asganpwmlg
      361 kptgpaeepq veeglgdvav pgaaerkede eeeeeevvse eeallqdfaq krhtrqqwae
      421 rpegrgadet eaipellgds pirpvcdeeq aslgmeqpsp aqeetllseq lnrvqtmedv
      481 ealaseelve erekpaaara kkrvqqqeeg ragdkrakkt pakkkkiisl qavlsgkpqe
      541 vpcaslplvv eeedggvdqr gviteafagd dvvadfrrek rkaeqaakpq pvnlvlpgwg
      601 ewggtglkps tkkvkrfllk pppapprkdq hlphvimser rnihaaahqv nelpfpfekh
      661 qqfeqsirmp lgstwntqra fqklttprvv traghiiqpi saedvpemat aagtgakpvl
      721 etlpkqqaep frrprkkar
//
LOCUS       XP_053931584             384 aa            linear   VRT 09-MAR-2023
DEFINITION  palmitoyltransferase ZDHHC9 [Cuculus canorus].
ACCESSION   XP_053931584
VERSION     XP_053931584.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075609.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..384
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..384
                     /product="palmitoyltransferase ZDHHC9"
                     /calculated_mol_wt=42626
     Region          138..261
                     /region_name="DHHC"
                     /note="DHHC palmitoyltransferase; pfam01529"
                     /db_xref="CDD:396215"
     CDS             1..384
                     /gene="ZDHHC9"
                     /coded_by="XM_054075609.1:227..1381"
                     /db_xref="GeneID:104060494"
ORIGIN      
        1 msvmvarkkv vrkweklpgr ntfccdgrim marqkgifyl tlflilgtca lffafecryl
       61 avqlspaipv faavlflfam atllrtsfsd pgvipralpd eaafiemeie atngtvpqgq
      121 rpppriknfq innqivklky cytckifrpp rashcsicdn cverfdhhcp wvgncvgkrn
      181 yryfylfils lslltiyift fnivyvalks lkigflntlk etpgtvlevl icfftlwsvv
      241 gltgfhtflv alnqttnedi kgswtgknrv qnpyshgniv knccevlcgp lppsvldrrg
      301 ilqqeestsq eescprapsa qeptvapgtg gqseessaqq kdgslphrsa vpapslsnae
      361 mpeekqltsg elpvpaqdsg qaeh
//
LOCUS       XP_053931585             384 aa            linear   VRT 09-MAR-2023
DEFINITION  palmitoyltransferase ZDHHC9 [Cuculus canorus].
ACCESSION   XP_053931585
VERSION     XP_053931585.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075610.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..384
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..384
                     /product="palmitoyltransferase ZDHHC9"
                     /calculated_mol_wt=42626
     Region          138..261
                     /region_name="DHHC"
                     /note="DHHC palmitoyltransferase; pfam01529"
                     /db_xref="CDD:396215"
     CDS             1..384
                     /gene="ZDHHC9"
                     /coded_by="XM_054075610.1:127..1281"
                     /db_xref="GeneID:104060494"
ORIGIN      
        1 msvmvarkkv vrkweklpgr ntfccdgrim marqkgifyl tlflilgtca lffafecryl
       61 avqlspaipv faavlflfam atllrtsfsd pgvipralpd eaafiemeie atngtvpqgq
      121 rpppriknfq innqivklky cytckifrpp rashcsicdn cverfdhhcp wvgncvgkrn
      181 yryfylfils lslltiyift fnivyvalks lkigflntlk etpgtvlevl icfftlwsvv
      241 gltgfhtflv alnqttnedi kgswtgknrv qnpyshgniv knccevlcgp lppsvldrrg
      301 ilqqeestsq eescprapsa qeptvapgtg gqseessaqq kdgslphrsa vpapslsnae
      361 mpeekqltsg elpvpaqdsg qaeh
//
LOCUS       XP_053931586             384 aa            linear   VRT 09-MAR-2023
DEFINITION  palmitoyltransferase ZDHHC9 [Cuculus canorus].
ACCESSION   XP_053931586
VERSION     XP_053931586.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075611.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..384
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..384
                     /product="palmitoyltransferase ZDHHC9"
                     /calculated_mol_wt=42626
     Region          138..261
                     /region_name="DHHC"
                     /note="DHHC palmitoyltransferase; pfam01529"
                     /db_xref="CDD:396215"
     CDS             1..384
                     /gene="ZDHHC9"
                     /coded_by="XM_054075611.1:128..1282"
                     /db_xref="GeneID:104060494"
ORIGIN      
        1 msvmvarkkv vrkweklpgr ntfccdgrim marqkgifyl tlflilgtca lffafecryl
       61 avqlspaipv faavlflfam atllrtsfsd pgvipralpd eaafiemeie atngtvpqgq
      121 rpppriknfq innqivklky cytckifrpp rashcsicdn cverfdhhcp wvgncvgkrn
      181 yryfylfils lslltiyift fnivyvalks lkigflntlk etpgtvlevl icfftlwsvv
      241 gltgfhtflv alnqttnedi kgswtgknrv qnpyshgniv knccevlcgp lppsvldrrg
      301 ilqqeestsq eescprapsa qeptvapgtg gqseessaqq kdgslphrsa vpapslsnae
      361 mpeekqltsg elpvpaqdsg qaeh
//
LOCUS       XP_053931587             403 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 12-like isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053931587
VERSION     XP_053931587.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075612.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..403
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..403
                     /product="ubiquitin carboxyl-terminal hydrolase 12-like
                     isoform X1"
                     /calculated_mol_wt=46191
     Region          74..400
                     /region_name="Peptidase_C19G"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02663"
                     /db_xref="CDD:239128"
     Site            order(77,82,350,366)
                     /site_type="active"
                     /db_xref="CDD:239128"
     CDS             1..403
                     /gene="LOC104058166"
                     /coded_by="XM_054075612.1:16..1227"
                     /db_xref="GeneID:104058166"
ORIGIN      
        1 mfsrilymrc ksptatspsc avcstkagfl sldlqpvwfl lstfrsslsg ganasaleke
       61 igpeqfpvne hyfglvnfgn tcycnsvlqa lyfcrpfrek vlaykvqprk keslltclsd
      121 lfnsiatqkk kvgvippkkf isrlrkenel fdnymqqdah eflnyllnti adllqeekkq
      181 ekqngklqng sieseegdkt dltwvheifq gtltnetrcl nceavsskde dfldlsvdve
      241 qntsithclr gfsntetlcs eykyyceqcr skqeaqkrmk vkklpmilal hlkrfkymdq
      301 lhrytklsyr vvfplelrlf ntsgdatnpd rmydlvavvv hcgsgpnrgh yitivkshgf
      361 wllfdddive kidaqaieef ygltsdiskn sesgyilfyq srd
//
LOCUS       XP_053931588             369 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053931588
VERSION     XP_053931588.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075613.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..369
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..369
                     /product="ubiquitin carboxyl-terminal hydrolase 12-like
                     isoform X2"
                     /calculated_mol_wt=42510
     Region          40..366
                     /region_name="Peptidase_C19G"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02663"
                     /db_xref="CDD:239128"
     Site            order(43,48,316,332)
                     /site_type="active"
                     /db_xref="CDD:239128"
     CDS             1..369
                     /gene="LOC104058166"
                     /coded_by="XM_054075613.1:111..1220"
                     /db_xref="GeneID:104058166"
ORIGIN      
        1 mdalmtvrrl asictmgana salekeigpe qfpvnehyfg lvnfgntcyc nsvlqalyfc
       61 rpfrekvlay kvqprkkesl ltclsdlfns iatqkkkvgv ippkkfisrl rkenelfdny
      121 mqqdahefln yllntiadll qeekkqekqn gklqngsies eegdktdltw vheifqgtlt
      181 netrclncea vsskdedfld lsvdveqnts ithclrgfsn tetlcseyky yceqcrskqe
      241 aqkrmkvkkl pmilalhlkr fkymdqlhry tklsyrvvfp lelrlfntsg datnpdrmyd
      301 lvavvvhcgs gpnrghyiti vkshgfwllf dddivekida qaieefyglt sdisknsesg
      361 yilfyqsrd
//
LOCUS       XP_053931590             249 aa            linear   VRT 09-MAR-2023
DEFINITION  ubiquitin carboxyl-terminal hydrolase 12-like isoform X3 [Cuculus
            canorus].
ACCESSION   XP_053931590
VERSION     XP_053931590.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075615.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..249
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..249
                     /product="ubiquitin carboxyl-terminal hydrolase 12-like
                     isoform X3"
                     /calculated_mol_wt=28782
     Region          <1..246
                     /region_name="Peptidase_C19G"
                     /note="A subfamily of Peptidase C19. Peptidase C19
                     contains ubiquitinyl hydrolases. They are intracellular
                     peptidases that remove ubiquitin molecules from
                     polyubiquinated peptides by cleavage of isopeptide bonds.
                     They hydrolyze bonds involving the carboxyl...; cd02663"
                     /db_xref="CDD:239128"
     CDS             1..249
                     /gene="LOC104058166"
                     /coded_by="XM_054075615.1:169..918"
                     /db_xref="GeneID:104058166"
ORIGIN      
        1 mqqdahefln yllntiadll qeekkqekqn gklqngsies eegdktdltw vheifqgtlt
       61 netrclncea vsskdedfld lsvdveqnts ithclrgfsn tetlcseyky yceqcrskqe
      121 aqkrmkvkkl pmilalhlkr fkymdqlhry tklsyrvvfp lelrlfntsg datnpdrmyd
      181 lvavvvhcgs gpnrghyiti vkshgfwllf dddivekida qaieefyglt sdisknsesg
      241 yilfyqsrd
//
LOCUS       XP_053931591            1268 aa            linear   VRT 09-MAR-2023
DEFINITION  AF4/FMR2 family member 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931591
VERSION     XP_053931591.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075616.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1268
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1268
                     /product="AF4/FMR2 family member 2 isoform X1"
                     /calculated_mol_wt=140064
     Region          18..527
                     /region_name="AF-4"
                     /note="AF-4 proto-oncoprotein N-terminal region;
                     pfam05110"
                     /db_xref="CDD:461550"
     Region          <552..871
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     Region          1006..1268
                     /region_name="AF-4_C"
                     /note="AF-4 proto-oncoprotein C-terminal region;
                     pfam18876"
                     /db_xref="CDD:465894"
     CDS             1..1268
                     /gene="AFF2"
                     /coded_by="XM_054075616.1:58..3864"
                     /db_xref="GeneID:104063100"
ORIGIN      
        1 mdlfdffrdw dleqqchyeq drnalkrkew errnqevqqd edlfasgfnl fgepyktnkg
       61 dalanrvqnt lgnydemkdl ltnhsnqshl vgipknsvpq tpidkneqnf fpeprnrmip
      121 shqisghsst smpppsslss nstllhghqs srksrtdwsr gghnssgaqp sqsssqqsrt
      181 khssshdqpq gryedlyncq seqhksggte eantmaassh srrhthsksa pgehtykens
      241 hskspaelef vghgpgsplp stsllsanng lstqnfppgl hcknsmvqqk ptayvrpmdg
      301 qdqvpndspe lkplieiesg ygnqpfgtll egkvntpssk nkvpklnips vsevtlpnds
      361 scveeilrem thswppplta ihtpgkaeqt kfsipskdsq hltsgynvqk wsdpagkvat
      421 ksvpqksmle ddlklssded dneqaaektk lrnipvnslp vpaahttgla hssggsgsss
      481 esesssesds dsessssdse cneesrsatp epeppstnkw qldkwlnkvn phnktiinnq
      541 nelhsetssq pqsnqqaegp nkgklnsslp ptdskdrail spirekakpr vaqktpeaks
      601 skqkspahne ptsqrttgkk qpkkvertss veeynwpkpn ntsntpkekd tqdppeqpkv
      661 rtkaavgkta prkeprtstg ltsekkkyrg pskivpksre fietdsstsd sntdqeeslq
      721 akvlpacggp angikvkdsg snilsvsslt sngsntssdq tsndleeqlf spipivqnel
      781 lsplreyeel kslwvkidls llsripgqeh fettsvksep reanvkhrrp sresptpaae
      841 kpptkskrkh kqpesldtfv eskkqrledp sascllppci spipnhrlts tkessgssvk
      901 kvtkkreekl fppplsplld epvhrrhssd nssfsqetni tnasqtssss ssvskhrkne
      961 nksssnskgi ceeeshnapt antlldtshl etdiwsampt lsngnseprr pkitfddvlh
     1021 nadyymqeak klkhkadall ekfgkavnya daalsfiecg namerdplea kspytmyset
     1081 veliryamrl knftgssate gdkklavlcy rclsllylrm fklkkdhamk ysrslmeyfk
     1141 nsskasqaps pwggngkste tpspmslsps pvssagsnag ttgsslagti tipqrihhma
     1201 ashvnitnnv lrsyehwdma dkltkenkef fvdldsvmgp ltqhssmtnl vryvrqglhw
     1261 lrieahll
//
LOCUS       XP_053931592            1267 aa            linear   VRT 09-MAR-2023
DEFINITION  AF4/FMR2 family member 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931592
VERSION     XP_053931592.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075617.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1267
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1267
                     /product="AF4/FMR2 family member 2 isoform X2"
                     /calculated_mol_wt=139935
     Region          18..527
                     /region_name="AF-4"
                     /note="AF-4 proto-oncoprotein N-terminal region;
                     pfam05110"
                     /db_xref="CDD:461550"
     Region          <552..870
                     /region_name="PTZ00449"
                     /note="104 kDa microneme/rhoptry antigen; Provisional"
                     /db_xref="CDD:185628"
     Region          1005..1267
                     /region_name="AF-4_C"
                     /note="AF-4 proto-oncoprotein C-terminal region;
                     pfam18876"
                     /db_xref="CDD:465894"
     CDS             1..1267
                     /gene="AFF2"
                     /coded_by="XM_054075617.1:58..3861"
                     /db_xref="GeneID:104063100"
ORIGIN      
        1 mdlfdffrdw dleqqchyeq drnalkrkew errnqevqqd edlfasgfnl fgepyktnkg
       61 dalanrvqnt lgnydemkdl ltnhsnqshl vgipknsvpq tpidkneqnf fpeprnrmip
      121 shqisghsst smpppsslss nstllhghqs srksrtdwsr gghnssgaqp sqsssqqsrt
      181 khssshdqpq gryedlyncq seqhksggte eantmaassh srrhthsksa pgehtykens
      241 hskspaelef vghgpgsplp stsllsanng lstqnfppgl hcknsmvqqk ptayvrpmdg
      301 qdqvpndspe lkplieiesg ygnqpfgtll egkvntpssk nkvpklnips vsevtlpnds
      361 scveeilrem thswppplta ihtpgkaeqt kfsipskdsq hltsgynvqk wsdpagkvat
      421 ksvpqksmle ddlklssded dneqaaektk lrnipvnslp vpaahttgla hssggsgsss
      481 esesssesds dsessssdse cneesrsatp epeppstnkw qldkwlnkvn phnktiinnq
      541 nelhsetssq pqsnqqaegp nkgklnsslp ptdskdrail spirekakpr vaqktpeaks
      601 skqkspahne ptsqrttgkk qpkkvertss veeynwpkpn ntsntpkekd tqdppeqpkv
      661 rtkaavgkta prkeprtstg ltsekkkyrg pskivpksre fietdsstsd sntdqeeslq
      721 akvlpacggp angikvkdsg snilsvsslt sngsntssdq tsndleeqlf spipivqnel
      781 lsplreyeel kslwvkidls llsripgqeh fettsvksep reanvkhrrp sresptpaae
      841 kpptkskrkh kpesldtfve skkqrledps ascllppcis pipnhrltst kessgssvkk
      901 vtkkreeklf ppplspllde pvhrrhssdn ssfsqetnit nasqtsssss svskhrknen
      961 ksssnskgic eeeshnapta ntlldtshle tdiwsamptl sngnseprrp kitfddvlhn
     1021 adyymqeakk lkhkadalle kfgkavnyad aalsfiecgn amerdpleak spytmysetv
     1081 eliryamrlk nftgssateg dkklavlcyr clsllylrmf klkkdhamky srslmeyfkn
     1141 sskasqapsp wggngkstet pspmslspsp vssagsnagt tgsslagtit ipqrihhmaa
     1201 shvnitnnvl rsyehwdmad kltkenkeff vdldsvmgpl tqhssmtnlv ryvrqglhwl
     1261 rieahll
//
LOCUS       XP_053931593             562 aa            linear   VRT 09-MAR-2023
DEFINITION  iduronate 2-sulfatase isoform X1 [Cuculus canorus].
ACCESSION   XP_053931593
VERSION     XP_053931593.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075618.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..562
                     /product="iduronate 2-sulfatase isoform X1"
                     /calculated_mol_wt=62943
     Region          39..546
                     /region_name="iduronate-2-sulfatase"
                     /note="cd16030"
                     /db_xref="CDD:293754"
     Site            order(47..48,86,137,139,231,336..337)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:293754"
     Site            order(47..48,86,137,139,231,337)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:293754"
     CDS             1..562
                     /gene="IDS"
                     /coded_by="XM_054075618.1:59..1747"
                     /db_xref="GeneID:104063029"
ORIGIN      
        1 msagraaawl cvcllalprs glappadrgr cggaagdgmn vlfivvddlr pvlgcygdei
       61 vkspnidqla sqsmvfsnay aqqavcapsr vsfltgrrpd ttrlydfysy wrvhagnyst
      121 mpqyfkengy vtlsvgkvfh pgvssnysdd ypyswsvppf hpstekyend ktcrgkdgkl
      181 yanlvcpvdv tempsgtlpd mqsteeairl lnvmktkkqk fflavgyhkp hiplrypqef
      241 lklyplenit lapdpwvpek lpsvaynpwm dirqrddvka lnvsfpygpl pddfqrqirq
      301 syyaavsyld tqvglllnal dnvglsnsti vvftadhgws lgehgewaky snfdvatrvp
      361 lmfyvpgvtt ssvsegerif pyldpfghgl glvpqghskk vvelvslfpt laelaglqvp
      421 pvcpessfhv alctegpsiv hyfnvseekv eeedngsddp yrcfneepva fsqyprpadt
      481 pqwnsdkpkl kdirimgysm rtidcrytvw vgfnpnnfsa dledvhagel ymvetdpnqd
      541 yniynntlhg nlfkkilafl kh
//
LOCUS       XP_053931594             546 aa            linear   VRT 09-MAR-2023
DEFINITION  iduronate 2-sulfatase isoform X2 [Cuculus canorus].
ACCESSION   XP_053931594
VERSION     XP_053931594.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075619.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..546
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..546
                     /product="iduronate 2-sulfatase isoform X2"
                     /calculated_mol_wt=61712
     Region          23..530
                     /region_name="iduronate-2-sulfatase"
                     /note="cd16030"
                     /db_xref="CDD:293754"
     Site            order(31..32,70,121,123,215,320..321)
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:293754"
     Site            order(31..32,70,121,123,215,321)
                     /site_type="other"
                     /note="putative substrate binding site [chemical binding]"
                     /db_xref="CDD:293754"
     CDS             1..546
                     /gene="IDS"
                     /coded_by="XM_054075619.1:290..1930"
                     /db_xref="GeneID:104063029"
ORIGIN      
        1 mtgenqfsad rehkafsspk ngmnvlfivv ddlrpvlgcy gdeivkspni dqlasqsmvf
       61 snayaqqavc apsrvsfltg rrpdttrlyd fysywrvhag nystmpqyfk engyvtlsvg
      121 kvfhpgvssn ysddypysws vppfhpstek yendktcrgk dgklyanlvc pvdvtempsg
      181 tlpdmqstee airllnvmkt kkqkfflavg yhkphiplry pqeflklypl enitlapdpw
      241 vpeklpsvay npwmdirqrd dvkalnvsfp ygplpddfqr qirqsyyaav syldtqvgll
      301 lnaldnvgls nstivvftad hgwslgehge wakysnfdva trvplmfyvp gvttssvseg
      361 erifpyldpf ghglglvpqg hskkvvelvs lfptlaelag lqvppvcpes sfhvalcteg
      421 psivhyfnvs eekveeedng sddpyrcfne epvafsqypr padtpqwnsd kpklkdirim
      481 gysmrtidcr ytvwvgfnpn nfsadledvh agelymvetd pnqdyniynn tlhgnlfkki
      541 laflkh
//
LOCUS       XP_053931595             350 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 185A isoform X1 [Cuculus canorus].
ACCESSION   XP_053931595
VERSION     XP_053931595.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075620.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..350
                     /product="transmembrane protein 185A isoform X1"
                     /calculated_mol_wt=40667
     Region          33..253
                     /region_name="Tmemb_185A"
                     /note="Transmembrane Fragile-X-F protein; pfam10269"
                     /db_xref="CDD:402059"
     CDS             1..350
                     /gene="TMEM185A"
                     /coded_by="XM_054075620.1:69..1121"
                     /db_xref="GeneID:104063019"
ORIGIN      
        1 mnlrglfqdf npskfliyac lllfsvllsl rlddkiqwsy wavfapiwlw klmvivgasv
       61 gtgvwarhpq yraegetcve fkamliavgi hllllmfevl vcdriergth fwllvfmplf
      121 fvspvsvaac vwgfrhdrsl eleilcsvni lqfifialrl deiirwpwlv vcvplwilms
      181 flclvvlyyi vwsvlflrsm dviaeqrrth itmavswmti vvplltfeil lvhrldghns
      241 fsfipifvpl wlslitlmat tfgqkggnhw wfgirkdfcq flleifpflr eygnisydlh
      301 hedneeteet plpeppkiap mfrkktgvvi tqspgkyvip ppklnidmpd
//
LOCUS       XP_009563463             343 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 185A isoform X2 [Cuculus canorus].
ACCESSION   XP_009563463
VERSION     XP_009563463.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565168.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009563463.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..343
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..343
                     /product="transmembrane protein 185A isoform X2"
                     /calculated_mol_wt=39831
     Region          26..246
                     /region_name="Tmemb_185A"
                     /note="Transmembrane Fragile-X-F protein; pfam10269"
                     /db_xref="CDD:402059"
     CDS             1..343
                     /gene="TMEM185A"
                     /coded_by="XM_009565168.2:986..2017"
                     /db_xref="GeneID:104063019"
ORIGIN      
        1 mlhlcskfli yaclllfsvl lslrlddkiq wsywavfapi wlwklmvivg asvgtgvwar
       61 hpqyraeget cvefkamlia vgihllllmf evlvcdrier gthfwllvfm plffvspvsv
      121 aacvwgfrhd rsleleilcs vnilqfifia lrldeiirwp wlvvcvplwi lmsflclvvl
      181 yyivwsvlfl rsmdviaeqr rthitmavsw mtivvplltf eillvhrldg hnsfsfipif
      241 vplwlslitl mattfgqkgg nhwwfgirkd fcqflleifp flreygnisy dlhhedneet
      301 eetplpeppk iapmfrkktg vvitqspgky vipppklnid mpd
//
LOCUS       XP_009563539             156 aa            linear   VRT 09-MAR-2023
DEFINITION  protein EOLA1-like [Cuculus canorus].
ACCESSION   XP_009563539
VERSION     XP_009563539.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009565244.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009563539.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..156
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..156
                     /product="protein EOLA1-like"
                     /calculated_mol_wt=17869
     Region          6..99
                     /region_name="ASCH"
                     /note="The ASCH domain adopts a beta-barrel fold similar
                     to that of the PUA domain; smart01022"
                     /db_xref="CDD:214979"
     CDS             1..156
                     /gene="LOC104063089"
                     /coded_by="XM_009565244.2:174..644"
                     /db_xref="GeneID:104063089"
ORIGIN      
        1 mrlgclsfrq pyaglvlngi ksletrwrpw lagyesrtla vhiavtdwqd etwrtiller
       61 lgvteerlre lleegerfgr gviaglidig etilfpenlp pekilemenk avlsnleqky
      121 ltvvsnprwl lepipargrr gvwqvdipee lipsrv
//
LOCUS       XP_053931596            1708 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: FERM and PDZ domain-containing protein 3
            [Cuculus canorus].
ACCESSION   XP_053931596
VERSION     XP_053931596.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075621.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1708
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1708
                     /product="LOW QUALITY PROTEIN: FERM and PDZ
                     domain-containing protein 3"
                     /calculated_mol_wt=188963
     Region          22..96
                     /region_name="PDZ_FRMPD1_3_4-like"
                     /note="PDZ domain of FERM and PDZ domain-containing
                     protein 1 (FRMPD1), FRMPD3, FRMPD4, and related domains;
                     cd06769"
                     /db_xref="CDD:467250"
     Site            order(32..38,46,49,77,81,84..85)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467250"
     Region          146..238
                     /region_name="FERM_F1_FRMPD3"
                     /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin)
                     domain, F1 sub-domain, found in FERM and PDZ
                     domain-containing protein 3 (FRMPD3); cd17169"
                     /db_xref="CDD:340689"
     Region          149..367
                     /region_name="B41"
                     /note="Band 4.1 homologues; smart00295"
                     /db_xref="CDD:214604"
     Region          364..466
                     /region_name="FERM_C_FRMPD1_FRMPD3_FRMPD4"
                     /note="FERM domain C-lobe of FERM and PDZ domain
                     containing proteins 1, 3, and 4 (FRMPD1, 3, 4); cd13183"
                     /db_xref="CDD:270004"
     Site            order(371,391,393,401)
                     /site_type="other"
                     /note="putative phosphoinositide binding site [chemical
                     binding]"
                     /db_xref="CDD:270004"
     Site            order(405,411..414,447,451,454..455)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270004"
     Site            447..458
                     /site_type="other"
                     /note="putative actin binding site 2 [polypeptide
                     binding]"
                     /db_xref="CDD:270004"
     CDS             1..1708
                     /gene="FRMPD3"
                     /coded_by="XM_054075621.1:152..5278"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /db_xref="GeneID:104069024"
ORIGIN      
        1 mleerggddm ecgqlpsdtl rqvtvqrhph ygfgfvagse rpvvvrsvaa ggpsedkllp
       61 gdqilainde dvseaprerf ielvrkakdf iiltvlhthq spksafisaa kkaklrsnpa
      121 kvrfseqvtv getdpdmlkk ealllipnvl kvflengqik sftfdgrttv kdvmvtlqdr
      181 lslrhiehfa lvleyssper shrflllqdk qplahvvqrt hyhgmrclfr vsffpkdpve
      241 llrrdpaafe ylyiqsrndv irerfgtdpk pemllglaal hiyitvsatr psqkvslknv
      301 ekewglepfl ppsllqlike kslrkslsqq lkahqnqpgg tkvstaqakl qylrilnelp
      361 tfagvlfntv gldekqpatt llvgprhgis hvidlktnlt tvlsefskvs kiqlfrenhg
      421 varvetsild akplvllmew peatnfacli agycrllvds kkmifsrapt qppppqiika
      481 dyinahnihr ppaaghtgkk dsglvggsgt straagasat rasdselisf cylhmreqrk
      541 eresrtdine nliffeetrp rtksdptsks sgqgyngtgn dydldgldqd rhasraraht
      601 idthlrsdas hfycescqak iksrlasckg gkpgstrdnm vdlmslpppg sdeeedetts
      661 llpaiaappp gfrdnssded dpkrraaaqs qeqgrhlcgi lydeipvtli dnvqprtvrd
      721 haqelddalv stlqaleala asedcphppp qqtaglivla aitpesslds ghetnsselt
      781 dvsemvsamk qhqnaayfla qhinkenfla rkdlpfriqs caaqavltsp yplshqeqsp
      841 svkptfshqs pnltnckskq eqqhaersyt lavqpvltpq lndqnrealv pgaeckgagy
      901 tkpafevslq ttaapsreqa qdlqektpke vqpsskllld kktgltpaii saalqqvana
      961 kgsapqvaaa skeeqnvngt sscapasskp lklkggpqta etlcncqqqq qlspqqhcev
     1021 spspkeahgs kaeafhltsa geemmpgktf asksyqqkvs rdgpvkttsg epgqkaggeg
     1081 tslvfqkhtt psnqgqkiqq essakslkae ssnlhspspg ssfrstseep kgpiqlvprs
     1141 eslqistvps kkvekvlevt qqdpdvpakp kapkapfrlr nlfsatfptr mkketderqa
     1201 qlqkvkqyel efleellkpk skgdlppqey lhppapgrcs cqlrsspvqk vpgmsreqrr
     1261 scdckricrg vrpppnqlvm pelerrgtdk vtddqkqaea irltsmssps kgkrirstsl
     1321 esrdyrsdpe ngmsclttct srgecmgaph yrkllrrysv seidktdgts lssdiyqsiy
     1381 ttqqkgpqke pepsilcpvl knkiqeasgv aepsyvqiaq ekknqkgsav fsvqeemyps
     1441 paelqdedme denccsiryc fyyrkcdvad dgsekdelsy sipmqilpgm kldnqmvpvm
     1501 srtlqvldat acsspndsqt qeidlrtssf egslakintl rghaysfpng flqvqldtne
     1561 lltilrqcvv spdvqdckpy isqlaeykqe lalkfkefra scrrvaavdk spthmlsait
     1621 ssfqvlssli etfvrlvyvv rsesqrqell skveevvrny tfllkaaees tarmlshqqt
     1681 veqlarqsat vatvmstltr slktlink
//
LOCUS       XP_053931598             684 aa            linear   VRT 09-MAR-2023
DEFINITION  cyclic nucleotide-gated olfactory channel [Cuculus canorus].
ACCESSION   XP_053931598
VERSION     XP_053931598.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075623.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..684
                     /product="cyclic nucleotide-gated olfactory channel"
                     /calculated_mol_wt=78240
     Region          147..389
                     /region_name="Ion_trans"
                     /note="Ion transport protein; pfam00520"
                     /db_xref="CDD:459842"
     Region          461..577
                     /region_name="CAP_ED"
                     /note="effector domain of the CAP family of transcription
                     factors; members include CAP (or cAMP receptor protein
                     (CRP)), which binds cAMP, FNR (fumarate and nitrate
                     reduction), which uses an iron-sulfur cluster to sense
                     oxygen) and CooA, a heme containing CO...; cd00038"
                     /db_xref="CDD:237999"
     Site            order(527..528,543..545)
                     /site_type="other"
                     /note="ligand binding site [chemical binding]"
                     /db_xref="CDD:237999"
     Site            order(565..567,571..573)
                     /site_type="other"
                     /note="flexible hinge region"
                     /db_xref="CDD:237999"
     Region          577..646
                     /region_name="CLZ"
                     /note="C-terminal leucine zipper domain of cyclic
                     nucleotide-gated channels; pfam16526"
                     /db_xref="CDD:465160"
     CDS             1..684
                     /gene="CNGA2"
                     /coded_by="XM_054075623.1:45..2099"
                     /db_xref="GeneID:104069060"
ORIGIN      
        1 mmdksndlhs spanhhpcpp aqarveedve gtglntrrtw ttrdgtssel qrgspldgge
       61 qpaastfqgr qtlarivrlv mvlrdwasks lheeqqrpdp flerfqgpel qaaaagagny
      121 ledeeteeen kkkkwyifvv dpagdwyyrw laviavpvly nwcllvarac fndlqktyvv
      181 lwlvldyisd tiyvgdivir lrtgfleqgl lvkdlkklrd nyihtlqfkm dvlsilptdl
      241 ayfavglhcp elrfnrllhf srmfeffdrt etrtshpnif risnlvlyil viihwnaciy
      301 faiskaigfg edswvypnit dpeygyltre yvyclywstl tlttigetpp pvrdeeylfv
      361 ifdfligvli fativgnvgs misnmnatra efqakidaik hymqfckvsk dmetkvikwf
      421 dylwtnkkav derevlknlp dklraeiain vhletlkkvr ifqdceagll velvlklrlq
      481 vfspgdyvcr kgdigkemyi ikegklavva ddgttqyall taggcfgeis ilnikgskmg
      541 nrrtanirsl gysdlfclsk edlmeavtey pdakkvledr greilikegl ldesaaeest
      601 egesveerld rlslnldtfq trfgrlmtey ndaqmklkqr itllesqmrq qdledffsds
      661 sgsisedeek vlpggmqwqg adds
//
LOCUS       XP_053931599             572 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear pore glycoprotein p62 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931599
VERSION     XP_053931599.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075624.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..572
                     /product="nuclear pore glycoprotein p62 isoform X1"
                     /calculated_mol_wt=57435
     Region          102..>322
                     /region_name="Nucleoporin_FG2"
                     /note="Nucleoporin FG repeated region; pfam15967"
                     /db_xref="CDD:435043"
     Region          375..479
                     /region_name="Nsp1_C"
                     /note="Nsp1-like C-terminal region; pfam05064"
                     /db_xref="CDD:461540"
     Region          417..562
                     /region_name="GAS"
                     /note="Growth-arrest specific micro-tubule binding;
                     pfam13851"
                     /db_xref="CDD:464001"
     CDS             1..572
                     /gene="LOC104069055"
                     /coded_by="XM_054075624.1:100..1818"
                     /db_xref="GeneID:104069055"
ORIGIN      
        1 mnqfglgagg gftfgtpkta attattgfsf stpaasgsfs fgaaaqpaag sqaagsqptg
       61 lfsfstpgga aqpagfsfgt tsaaaaapaa nafpaganap klnfggsaap patgitgsfs
      121 fgssaattvp ssqaaapsgf vfgtagttst tatstqsgtt ggftfpsgtt tqagtvgfni
      181 gtaaqaapmg ltfgaapaaa attaatlgaa tqstapfslg tpstgltfgs lpstattsap
      241 vatlatstsq gptlsfgtkl gvtstaatta attttsilgs tgptlfasav sssaptpstt
      301 tglslgapst gtaglgtlgf glkvpgttta ttstatgtts asgfalnlkp ltttgaigav
      361 tstaaittaa asstppvmty aqleslinkw sleledqekh flhqatqvna wdrmlienge
      421 kitslhkeve kvkldqkrld qdldfilsqq keledlltpl eesvkeqsgt iylqhadeer
      481 ektyklaeni daqlkrmaqd lkdiiehlnt sggpadtsdp lqqickilna hmdslqwidq
      541 nsavlqrkve evtkvcesrr keqersfrit fd
//
LOCUS       XP_053931600             562 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear pore glycoprotein p62 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931600
VERSION     XP_053931600.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075625.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..562
                     /product="nuclear pore glycoprotein p62 isoform X2"
                     /calculated_mol_wt=56474
     Region          102..>312
                     /region_name="Nucleoporin_FG2"
                     /note="Nucleoporin FG repeated region; pfam15967"
                     /db_xref="CDD:435043"
     Region          365..469
                     /region_name="Nsp1_C"
                     /note="Nsp1-like C-terminal region; pfam05064"
                     /db_xref="CDD:461540"
     Region          407..552
                     /region_name="GAS"
                     /note="Growth-arrest specific micro-tubule binding;
                     pfam13851"
                     /db_xref="CDD:464001"
     CDS             1..562
                     /gene="LOC104069055"
                     /coded_by="XM_054075625.1:100..1788"
                     /db_xref="GeneID:104069055"
ORIGIN      
        1 mnqfglgagg gftfgtpkta attattgfsf stpaasgsfs fgaaaqpaag sqaagsqptg
       61 lfsfstpgga aqpagfsfgt tsaaaaapaa nafpaganap klnfggsaap patgitgsfs
      121 fgssaattvp ssqaaapsgf vfgtagttst tatstqsgtt ggftfpsgtt tqagtvgfni
      181 gtaaqaapmg ltfgaapaaa attaatlgaa tqstapfslg tpstattsap vatlatstsq
      241 gptlsfgtkl gvtstaatta attttsilgs tgptlfasav sssaptpstt tglslgapst
      301 gtaglgtlgf glkvpgttta ttstatgtts asgfalnlkp ltttgaigav tstaaittaa
      361 asstppvmty aqleslinkw sleledqekh flhqatqvna wdrmlienge kitslhkeve
      421 kvkldqkrld qdldfilsqq keledlltpl eesvkeqsgt iylqhadeer ektyklaeni
      481 daqlkrmaqd lkdiiehlnt sggpadtsdp lqqickilna hmdslqwidq nsavlqrkve
      541 evtkvcesrr keqersfrit fd
//
LOCUS       XP_053931601             568 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear pore glycoprotein p62-like isoform X1 [Cuculus canorus].
ACCESSION   XP_053931601
VERSION     XP_053931601.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075626.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..568
                     /product="nuclear pore glycoprotein p62-like isoform X1"
                     /calculated_mol_wt=57152
     Region          97..>561
                     /region_name="Nucleoporin_FG2"
                     /note="Nucleoporin FG repeated region; pfam15967"
                     /db_xref="CDD:435043"
     Region          371..475
                     /region_name="Nsp1_C"
                     /note="Nsp1-like C-terminal region; pfam05064"
                     /db_xref="CDD:461540"
     CDS             1..568
                     /gene="LOC104069054"
                     /coded_by="XM_054075626.1:117..1823"
                     /db_xref="GeneID:104069054"
ORIGIN      
        1 mnqfglgagg gftfgtpkta attattgfsf stpaasgsfs fgaaaqpaas gqpaglfsfs
       61 tpggaaqpag fsfgttgaaa aapaanafpa ganapklnfg gstappatgi tgsfsfgssa
      121 attvpssqaa apsgfvfgta gttsttatst qsgttggftf psgtttqagt vgfnigtaaa
      181 qaaptgltfg aapaaaatta atlgaatqsa apfslgtpst gltfgslpst attsapvatl
      241 ststsqgptl sfgtklgvts taattaattt tsilgstgpt lfasavsssa ptsstttgls
      301 lgapstgtas lgtlgfglkv pgtttattst atgttsasgf alnlkplttt gaigavtsta
      361 aittaaasst ppvmtyaqle slinkwslel edqekhflhq atqvnawdrm liengekits
      421 lhkevekvkl dqkrldqdld filsqqkele dlltpleesv keqsgtiylq hadeererty
      481 klaenidaql krmaqdlkdi tehlntsrgp adtsdplqqi ckilnahmds lqwidqnsav
      541 lqrkveevtk vcesrrkeqe rsfritfd
//
LOCUS       XP_053931602             558 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear pore glycoprotein p62-like isoform X2 [Cuculus canorus].
ACCESSION   XP_053931602
VERSION     XP_053931602.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075627.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..558
                     /product="nuclear pore glycoprotein p62-like isoform X2"
                     /calculated_mol_wt=56191
     Region          97..>551
                     /region_name="Nucleoporin_FG2"
                     /note="Nucleoporin FG repeated region; pfam15967"
                     /db_xref="CDD:435043"
     Region          361..465
                     /region_name="Nsp1_C"
                     /note="Nsp1-like C-terminal region; pfam05064"
                     /db_xref="CDD:461540"
     CDS             1..558
                     /gene="LOC104069054"
                     /coded_by="XM_054075627.1:117..1793"
                     /db_xref="GeneID:104069054"
ORIGIN      
        1 mnqfglgagg gftfgtpkta attattgfsf stpaasgsfs fgaaaqpaas gqpaglfsfs
       61 tpggaaqpag fsfgttgaaa aapaanafpa ganapklnfg gstappatgi tgsfsfgssa
      121 attvpssqaa apsgfvfgta gttsttatst qsgttggftf psgtttqagt vgfnigtaaa
      181 qaaptgltfg aapaaaatta atlgaatqsa apfslgtpst attsapvatl ststsqgptl
      241 sfgtklgvts taattaattt tsilgstgpt lfasavsssa ptsstttgls lgapstgtas
      301 lgtlgfglkv pgtttattst atgttsasgf alnlkplttt gaigavtsta aittaaasst
      361 ppvmtyaqle slinkwslel edqekhflhq atqvnawdrm liengekits lhkevekvkl
      421 dqkrldqdld filsqqkele dlltpleesv keqsgtiylq hadeererty klaenidaql
      481 krmaqdlkdi tehlntsrgp adtsdplqqi ckilnahmds lqwidqnsav lqrkveevtk
      541 vcesrrkeqe rsfritfd
//
LOCUS       XP_009570292             522 aa            linear   VRT 09-MAR-2023
DEFINITION  gamma-aminobutyric acid receptor subunit gamma-4 [Cuculus canorus].
ACCESSION   XP_009570292
VERSION     XP_009570292.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009571997.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009570292.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..522
                     /product="gamma-aminobutyric acid receptor subunit
                     gamma-4"
                     /calculated_mol_wt=60304
     Region          118..519
                     /region_name="LIC"
                     /note="Cation transporter family protein; cl42365"
                     /db_xref="CDD:455710"
     Region          140..321
                     /region_name="LGIC_ECD"
                     /note="extracellular domain (ECD) of Cys-loop
                     neurotransmitter-gated ion channels (also known as
                     ligand-gated ion channel (LGIC)); cl28912"
                     /db_xref="CDD:475126"
     Site            order(150,152,158..159,166,184,186,198..199,201,203..204,
                     217..219,221,231,233,235,239,261,321)
                     /site_type="other"
                     /note="pentamer interface [polypeptide binding]"
                     /db_xref="CDD:349787"
     CDS             1..522
                     /gene="LOC104069029"
                     /coded_by="XM_009571997.2:100..1668"
                     /db_xref="GeneID:104069029"
ORIGIN      
        1 mrgeaaparg grtlhrapps pspprtrrrd aqlsprwpgg rrrgwsaaqr apggppcrpr
       61 daprlaempg mlllllclal gtvlrarces teeydydyls inktwvltpk tqetdatqil
      121 nsllknydnk lrpdigikpt fidvdiyvns igpvsviqme ytidiffaqt wydrrlrfns
      181 tlkaltlntn mvsriwipdt ffrnskrads hwittpnqll riwndgkvly tlrltieaec
      241 llqlqnfpmd thscplvfss ygypreeivy rwrrysievs dqrtwrlyqf dftglrntse
      301 vlrtgageym vmtvsfdlsr rmgyfaiqty ipciltvvls wvsfwikrds tpartslgit
      361 tvltmttlst isrkhlprvs yitamdlfvs vcfifvfaal meyatlnylv gnkkplkhnn
      421 rkarlppaga qvmpsfttin innimhwppe ieddededpg spclegkece rffcciedcq
      481 tgmwregrvr ihisrldsys rvffptafll fnivywiayl yl
//
LOCUS       XP_053931603             490 aa            linear   VRT 09-MAR-2023
DEFINITION  glycine receptor subunit alpha-4 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931603
VERSION     XP_053931603.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075628.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..490
                     /product="glycine receptor subunit alpha-4 isoform X1"
                     /calculated_mol_wt=56044
     Region          27..478
                     /region_name="LIC"
                     /note="Cation transporter family protein; TIGR00860"
                     /db_xref="CDD:273305"
     CDS             1..490
                     /gene="LOC104069019"
                     /coded_by="XM_054075628.1:304..1776"
                     /db_xref="GeneID:104069019"
ORIGIN      
        1 mgafafllll lgcllprrgp lrlvsgreei kaasrsspqp mspsdfldkl mgrtsgydar
       61 irpnfkgppv nvtcnifins fgsitettmd yrvnvflrqq wndprlayre ypddsldldp
      121 smldsiwkpd lffanekgan fhevttdnkl lrifkngnvl ysirltlils cpmdlknfpm
      181 diqtctmqle sfgytmndli fewleeqeav qvaegltlpq filrdekdlg yctkyyntgk
      241 ftcievkfhl erqmgyyliq myipsllivi lswvsfwinm daaparvglg ittvltmttq
      301 sagsraslpk vsyvkaidiw mavcllfvfa alleyaavnf vsrqhkefmr lyrrqrrqrm
      361 glssgtasle slqqlsvqyg sehtyatlsq lsssreeelv resrfylrgy glghclqpkd
      421 gagegpgiys ppaagmllqe eeslrrryid rakridtisr avfpftflvf nifywvvykv
      481 lrsedihsvp
//
LOCUS       XP_053931604             455 aa            linear   VRT 09-MAR-2023
DEFINITION  glycine receptor subunit alpha-4 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931604
VERSION     XP_053931604.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075629.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..455
                     /product="glycine receptor subunit alpha-4 isoform X2"
                     /calculated_mol_wt=52388
     Region          27..443
                     /region_name="LIC"
                     /note="Cation transporter family protein; TIGR00860"
                     /db_xref="CDD:273305"
     CDS             1..455
                     /gene="LOC104069019"
                     /coded_by="XM_054075629.1:180..1547"
                     /db_xref="GeneID:104069019"
ORIGIN      
        1 mgafafllll lgcllprrgp lrlvsgreei kaasrsspqp mspsdfldkl mgrtsgydar
       61 irpnfkgppv nvtcnifins fgsitettmd yrvnvflrqq wndprlayre ypddsldldp
      121 smldsiwkpd lffanekgan fhevttdnkl lrifkngnvl ysirltlils cpmdlknfpm
      181 diqtctmqle sfgytmndli fewleeqeav qvaegltlpq filrdekdlg yctkyyntgk
      241 ftcievkfhl erqmgyyliq myipsllivi lswvsfwinm daaparvglg ittvltmttq
      301 sagsraslpk vsyvkaidiw mavcllfvfa alleyaavnf vsrqhkefmr lyrrqrrqrm
      361 eeelvresrf ylrgyglghc lqpkdgageg pgiysppaag mllqeeeslr rryidrakri
      421 dtisravfpf tflvfnifyw vvykvlrsed ihsvp
//
LOCUS       XP_053931605             450 aa            linear   VRT 09-MAR-2023
DEFINITION  glycine receptor subunit alpha-4 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931605
VERSION     XP_053931605.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075630.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..450
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..450
                     /product="glycine receptor subunit alpha-4 isoform X3"
                     /calculated_mol_wt=51740
     Region          5..438
                     /region_name="LIC"
                     /note="Cation transporter family protein; TIGR00860"
                     /db_xref="CDD:273305"
     CDS             1..450
                     /gene="LOC104069019"
                     /coded_by="XM_054075630.1:1819..3171"
                     /db_xref="GeneID:104069019"
ORIGIN      
        1 mspsdfldkl mgrtsgydar irpnfkgppv nvtcnifins fgsitettmd yrvnvflrqq
       61 wndprlayre ypddsldldp smldsiwkpd lffanekgan fhevttdnkl lrifkngnvl
      121 ysirltlils cpmdlknfpm diqtctmqle sfgytmndli fewleeqeav qvaegltlpq
      181 filrdekdlg yctkyyntgk ftcievkfhl erqmgyyliq myipsllivi lswvsfwinm
      241 daaparvglg ittvltmttq sagsraslpk vsyvkaidiw mavcllfvfa alleyaavnf
      301 vsrqhkefmr lyrrqrrqrm glssgtasle slqqlsvqyg sehtyatlsq lsssreeelv
      361 resrfylrgy glghclqpkd gagegpgiys ppaagmllqe eeslrrryid rakridtisr
      421 avfpftflvf nifywvvykv lrsedihsvp
//
LOCUS       XP_053931606             450 aa            linear   VRT 09-MAR-2023
DEFINITION  glycine receptor subunit alpha-4 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931606
VERSION     XP_053931606.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075631.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..450
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..450
                     /product="glycine receptor subunit alpha-4 isoform X3"
                     /calculated_mol_wt=51740
     Region          5..438
                     /region_name="LIC"
                     /note="Cation transporter family protein; TIGR00860"
                     /db_xref="CDD:273305"
     CDS             1..450
                     /gene="LOC104069019"
                     /coded_by="XM_054075631.1:287..1639"
                     /db_xref="GeneID:104069019"
ORIGIN      
        1 mspsdfldkl mgrtsgydar irpnfkgppv nvtcnifins fgsitettmd yrvnvflrqq
       61 wndprlayre ypddsldldp smldsiwkpd lffanekgan fhevttdnkl lrifkngnvl
      121 ysirltlils cpmdlknfpm diqtctmqle sfgytmndli fewleeqeav qvaegltlpq
      181 filrdekdlg yctkyyntgk ftcievkfhl erqmgyyliq myipsllivi lswvsfwinm
      241 daaparvglg ittvltmttq sagsraslpk vsyvkaidiw mavcllfvfa alleyaavnf
      301 vsrqhkefmr lyrrqrrqrm glssgtasle slqqlsvqyg sehtyatlsq lsssreeelv
      361 resrfylrgy glghclqpkd gagegpgiys ppaagmllqe eeslrrryid rakridtisr
      421 avfpftflvf nifywvvykv lrsedihsvp
//
LOCUS       XP_009570321             401 aa            linear   VRT 09-MAR-2023
DEFINITION  RNA-binding protein 41 [Cuculus canorus].
ACCESSION   XP_009570321
VERSION     XP_009570321.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009572026.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009570321.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..401
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..401
                     /product="RNA-binding protein 41"
                     /calculated_mol_wt=44694
     Region          299..376
                     /region_name="RRM2_RBM40_like"
                     /note="RNA recognition motif 2 (RRM2) found in RNA-binding
                     protein 40 (RBM40) and similar proteins; cd12239"
                     /db_xref="CDD:409685"
     CDS             1..401
                     /gene="RBM41"
                     /coded_by="XM_009572026.2:41..1246"
                     /db_xref="GeneID:104069056"
ORIGIN      
        1 mrrvnsslss dellledlet egerqlksll hhqldttasi eqckskrrcf apaafykpfg
       61 eeaagaltls qfqalqesdk etaslrelgl sdseillwkn rastgkgsgl gaapeatqdr
      121 lhaiqekmee rqrilalpqr fagskqltrr emeienalfq gtdrhsflra lyhqddtqkr
      181 vtdekdpmvh lesvyqellg kkrpeevqpt ksdpclcpsl apqgpvaees slpdqeeqae
      241 qatslsfpat gphqspprpv iikepvefvp eeeicknrls eeelrniprf ssyhpgepnk
      301 vlylknlgpr vttkdlvslf arfqkedssp iqfrllsgrm rgqafitfpd iqsaqeamll
      361 vngynlqgkp lviefgkskg hlpdtapaip cssagekppa e
//
LOCUS       XP_053931607             350 aa            linear   VRT 09-MAR-2023
DEFINITION  ribose-phosphate pyrophosphokinase 1 [Cuculus canorus].
ACCESSION   XP_053931607
VERSION     XP_053931607.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075632.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..350
                     /product="ribose-phosphate pyrophosphokinase 1"
                     /calculated_mol_wt=37826
     Region          33..346
                     /region_name="PrsA"
                     /note="Phosphoribosylpyrophosphate synthetase [Nucleotide
                     transport and metabolism]; COG0462"
                     /db_xref="CDD:440230"
     CDS             1..350
                     /gene="PRPS1"
                     /coded_by="XM_054075632.1:77..1129"
                     /db_xref="GeneID:104069023"
ORIGIN      
        1 mlrrrpclra aagavarqsa eeeegaaaaa avmpnikifs gsshqdlsqk iadrlglelg
       61 kvvtkkfsnq etcveigesv rgedvyivqs gcgeindnlm elliminack iasasrvtav
      121 ipcfpyarqd kkdksrapis aklvanmlsv agadhiitmd lhasqiqgff dipvdnlyae
      181 pavlkwiken iaewknctiv spdaggakrv tsiadrlnvd falihkerkk anevdrmvlv
      241 gdvkdrvail vddmadtcgt ichaadklvs agatkvyail thgifsgpai srinnacfea
      301 vvvtntipqe dkmkqcpkiq vidismilae airrthnges vsylfshvpl
//
LOCUS       XP_009570289             314 aa            linear   VRT 09-MAR-2023
DEFINITION  fetal and adult testis-expressed transcript protein isoform X1
            [Cuculus canorus].
ACCESSION   XP_009570289
VERSION     XP_009570289.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009571994.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009570289.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..314
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..314
                     /product="fetal and adult testis-expressed transcript
                     protein isoform X1"
                     /calculated_mol_wt=35367
     Region          48..314
                     /region_name="Miff"
                     /note="Mitochondrial and peroxisomal fission factor Mff;
                     pfam05644"
                     /db_xref="CDD:461701"
     CDS             1..314
                     /gene="FATE1"
                     /coded_by="XM_009571994.2:385..1329"
                     /db_xref="GeneID:104069028"
ORIGIN      
        1 mccpcagatw eelisvtftw lsfslcetpg cssslkkskk mwpfwgldln rvrcdlvfte
       61 ainqrmqvpn rlkvaesfsp vderpvtedv ppsfrmhipd rislaeisda slrpilpnqq
      121 rkvpstmvhv spdssaqpth lgelpflhva srsssqkrkr sghhssksrr ertpndcaql
      181 alhslgqhhe rpdtcllpar saplpllpet griysmqnif qtmyllgqvl fhrvqdslqd
      241 pvssssqeag papesaleev gvaemaamrk qltrisgrlr mleeqcnawr qketlvysvl
      301 isacllnmwl wlrr
//
LOCUS       XP_053931609             260 aa            linear   VRT 09-MAR-2023
DEFINITION  fetal and adult testis-expressed transcript protein isoform X2
            [Cuculus canorus].
ACCESSION   XP_053931609
VERSION     XP_053931609.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075634.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..260
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..260
                     /product="fetal and adult testis-expressed transcript
                     protein isoform X2"
                     /calculated_mol_wt=29339
     Region          48..260
                     /region_name="Miff"
                     /note="Mitochondrial and peroxisomal fission factor Mff;
                     pfam05644"
                     /db_xref="CDD:461701"
     CDS             1..260
                     /gene="FATE1"
                     /coded_by="XM_054075634.1:450..1232"
                     /db_xref="GeneID:104069028"
ORIGIN      
        1 mccpcagatw eelisvtftw lsfslcetpg cssslkkskk mwpfwgldln rvrcdlvfte
       61 ainqrmqvpn rlkvaesfsp vderpvtedv ppsfrmhipd rislaeisda slrpilpnqq
      121 rkvpstmvhv spdssaqpth lgelpflhva srsssqkrkr sghhssksrr ertpndcaql
      181 alhslgqhhe rsqeagpape saleevgvae maamrkqltr isgrlrmlee qcnawrqket
      241 lvysvlisac llnmwlwlrr
//
LOCUS       XP_053931610             277 aa            linear   VRT 09-MAR-2023
DEFINITION  myelin proteolipid protein isoform X1 [Cuculus canorus].
ACCESSION   XP_053931610
VERSION     XP_053931610.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075635.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..277
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..277
                     /product="myelin proteolipid protein isoform X1"
                     /calculated_mol_wt=29973
     Region          5..273
                     /region_name="Myelin_PLP"
                     /note="Myelin proteolipid protein (PLP or lipophilin);
                     pfam01275"
                     /db_xref="CDD:460144"
     CDS             1..277
                     /gene="PLP1"
                     /coded_by="XM_054075635.1:150..983"
                     /db_xref="GeneID:104069020"
ORIGIN      
        1 mglleccarc vigapfaslv atglcffgva lfcgcgheal tgteqliety fsknyqdyey
       61 lidvihafqy viygtasfff lygalllaeg fyttgavrqi fgdyrtticg kglsatvtgg
      121 pkgrgargpq rahslqrvcq clgkwlghpd kfvgityvlt iiwllvfacs avpvyiyfnt
      181 wttcqsianp skttasigtl cadarmygvl pwnafpgkvc gsnllsickt sefqmtfhlf
      241 iaafvgaaat lvslltfmia atynfavlkl mgrgtkf
//
LOCUS       XP_009570283             242 aa            linear   VRT 09-MAR-2023
DEFINITION  myelin proteolipid protein isoform X2 [Cuculus canorus].
ACCESSION   XP_009570283
VERSION     XP_009570283.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009571988.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..242
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..242
                     /product="myelin proteolipid protein isoform X2"
                     /calculated_mol_wt=26239
     Region          5..238
                     /region_name="Myelin_PLP"
                     /note="Myelin proteolipid protein (PLP or lipophilin);
                     pfam01275"
                     /db_xref="CDD:460144"
     CDS             1..242
                     /gene="PLP1"
                     /coded_by="XM_009571988.2:150..878"
                     /db_xref="GeneID:104069020"
ORIGIN      
        1 mglleccarc vigapfaslv atglcffgva lfcgcgheal tgteqliety fsknyqdyey
       61 lidvihafqy viygtasfff lygalllaeg fyttgavrqi fgdyrtticg kglsatfvgi
      121 tyvltiiwll vfacsavpvy iyfntwttcq sianpsktta sigtlcadar mygvlpwnaf
      181 pgkvcgsnll sicktsefqm tfhlfiaafv gaaatlvsll tfmiaatynf avlklmgrgt
      241 kf
//
LOCUS       XP_053931611             234 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane gamma-carboxyglutamic acid protein 3 [Cuculus
            canorus].
ACCESSION   XP_053931611
VERSION     XP_053931611.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075636.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..234
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..234
                     /product="transmembrane gamma-carboxyglutamic acid protein
                     3"
                     /calculated_mol_wt=26064
     Region          24..64
                     /region_name="Gla"
                     /note="Vitamin K-dependent
                     carboxylation/gamma-carboxyglutamic (GLA) domain;
                     pfam00594"
                     /db_xref="CDD:459861"
     CDS             1..234
                     /gene="PRRG3"
                     /coded_by="XM_054075636.1:2651..3355"
                     /db_xref="GeneID:104069059"
ORIGIN      
        1 mamflgarna hsvlkrfpra ngfleeirqg tierecieev csyeevkevf enkektmefw
       61 kgytnsvysv kdpghstehs damyvvvpll gvallivial fiiwrcqlqk atrhrpsyaq
      121 nrylasrtgc slprvmvyre rsqsqgetqy qreassrvag dgragdapqq dstlyppehs
      181 vsvlsrlssa tpppsyeevt ghpesssgee tsisyndppp kyeeivatap vagk
//
LOCUS       XP_053931612             234 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane gamma-carboxyglutamic acid protein 3 [Cuculus
            canorus].
ACCESSION   XP_053931612
VERSION     XP_053931612.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075637.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..234
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..234
                     /product="transmembrane gamma-carboxyglutamic acid protein
                     3"
                     /calculated_mol_wt=26064
     Region          24..64
                     /region_name="Gla"
                     /note="Vitamin K-dependent
                     carboxylation/gamma-carboxyglutamic (GLA) domain;
                     pfam00594"
                     /db_xref="CDD:459861"
     CDS             1..234
                     /gene="PRRG3"
                     /coded_by="XM_054075637.1:578..1282"
                     /db_xref="GeneID:104069059"
ORIGIN      
        1 mamflgarna hsvlkrfpra ngfleeirqg tierecieev csyeevkevf enkektmefw
       61 kgytnsvysv kdpghstehs damyvvvpll gvallivial fiiwrcqlqk atrhrpsyaq
      121 nrylasrtgc slprvmvyre rsqsqgetqy qreassrvag dgragdapqq dstlyppehs
      181 vsvlsrlssa tpppsyeevt ghpesssgee tsisyndppp kyeeivatap vagk
//
LOCUS       XP_053931613             234 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane gamma-carboxyglutamic acid protein 3 [Cuculus
            canorus].
ACCESSION   XP_053931613
VERSION     XP_053931613.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075638.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..234
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..234
                     /product="transmembrane gamma-carboxyglutamic acid protein
                     3"
                     /calculated_mol_wt=26064
     Region          24..64
                     /region_name="Gla"
                     /note="Vitamin K-dependent
                     carboxylation/gamma-carboxyglutamic (GLA) domain;
                     pfam00594"
                     /db_xref="CDD:459861"
     CDS             1..234
                     /gene="PRRG3"
                     /coded_by="XM_054075638.1:122..826"
                     /db_xref="GeneID:104069059"
ORIGIN      
        1 mamflgarna hsvlkrfpra ngfleeirqg tierecieev csyeevkevf enkektmefw
       61 kgytnsvysv kdpghstehs damyvvvpll gvallivial fiiwrcqlqk atrhrpsyaq
      121 nrylasrtgc slprvmvyre rsqsqgetqy qreassrvag dgragdapqq dstlyppehs
      181 vsvlsrlssa tpppsyeevt ghpesssgee tsisyndppp kyeeivatap vagk
//
LOCUS       XP_053931614             234 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane gamma-carboxyglutamic acid protein 3 [Cuculus
            canorus].
ACCESSION   XP_053931614
VERSION     XP_053931614.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075639.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..234
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..234
                     /product="transmembrane gamma-carboxyglutamic acid protein
                     3"
                     /calculated_mol_wt=26064
     Region          24..64
                     /region_name="Gla"
                     /note="Vitamin K-dependent
                     carboxylation/gamma-carboxyglutamic (GLA) domain;
                     pfam00594"
                     /db_xref="CDD:459861"
     CDS             1..234
                     /gene="PRRG3"
                     /coded_by="XM_054075639.1:2462..3166"
                     /db_xref="GeneID:104069059"
ORIGIN      
        1 mamflgarna hsvlkrfpra ngfleeirqg tierecieev csyeevkevf enkektmefw
       61 kgytnsvysv kdpghstehs damyvvvpll gvallivial fiiwrcqlqk atrhrpsyaq
      121 nrylasrtgc slprvmvyre rsqsqgetqy qreassrvag dgragdapqq dstlyppehs
      181 vsvlsrlssa tpppsyeevt ghpesssgee tsisyndppp kyeeivatap vagk
//
LOCUS       XP_053931615             234 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane gamma-carboxyglutamic acid protein 3 [Cuculus
            canorus].
ACCESSION   XP_053931615
VERSION     XP_053931615.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075640.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..234
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..234
                     /product="transmembrane gamma-carboxyglutamic acid protein
                     3"
                     /calculated_mol_wt=26064
     Region          24..64
                     /region_name="Gla"
                     /note="Vitamin K-dependent
                     carboxylation/gamma-carboxyglutamic (GLA) domain;
                     pfam00594"
                     /db_xref="CDD:459861"
     CDS             1..234
                     /gene="PRRG3"
                     /coded_by="XM_054075640.1:274..978"
                     /db_xref="GeneID:104069059"
ORIGIN      
        1 mamflgarna hsvlkrfpra ngfleeirqg tierecieev csyeevkevf enkektmefw
       61 kgytnsvysv kdpghstehs damyvvvpll gvallivial fiiwrcqlqk atrhrpsyaq
      121 nrylasrtgc slprvmvyre rsqsqgetqy qreassrvag dgragdapqq dstlyppehs
      181 vsvlsrlssa tpppsyeevt ghpesssgee tsisyndppp kyeeivatap vagk
//
LOCUS       XP_053931616             234 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane gamma-carboxyglutamic acid protein 3 [Cuculus
            canorus].
ACCESSION   XP_053931616
VERSION     XP_053931616.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075641.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..234
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..234
                     /product="transmembrane gamma-carboxyglutamic acid protein
                     3"
                     /calculated_mol_wt=26064
     Region          24..64
                     /region_name="Gla"
                     /note="Vitamin K-dependent
                     carboxylation/gamma-carboxyglutamic (GLA) domain;
                     pfam00594"
                     /db_xref="CDD:459861"
     CDS             1..234
                     /gene="PRRG3"
                     /coded_by="XM_054075641.1:54..758"
                     /db_xref="GeneID:104069059"
ORIGIN      
        1 mamflgarna hsvlkrfpra ngfleeirqg tierecieev csyeevkevf enkektmefw
       61 kgytnsvysv kdpghstehs damyvvvpll gvallivial fiiwrcqlqk atrhrpsyaq
      121 nrylasrtgc slprvmvyre rsqsqgetqy qreassrvag dgragdapqq dstlyppehs
      181 vsvlsrlssa tpppsyeevt ghpesssgee tsisyndppp kyeeivatap vagk
//
LOCUS       XP_053931617             234 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane gamma-carboxyglutamic acid protein 3 [Cuculus
            canorus].
ACCESSION   XP_053931617
VERSION     XP_053931617.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075642.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..234
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..234
                     /product="transmembrane gamma-carboxyglutamic acid protein
                     3"
                     /calculated_mol_wt=26064
     Region          24..64
                     /region_name="Gla"
                     /note="Vitamin K-dependent
                     carboxylation/gamma-carboxyglutamic (GLA) domain;
                     pfam00594"
                     /db_xref="CDD:459861"
     CDS             1..234
                     /gene="PRRG3"
                     /coded_by="XM_054075642.1:50..754"
                     /db_xref="GeneID:104069059"
ORIGIN      
        1 mamflgarna hsvlkrfpra ngfleeirqg tierecieev csyeevkevf enkektmefw
       61 kgytnsvysv kdpghstehs damyvvvpll gvallivial fiiwrcqlqk atrhrpsyaq
      121 nrylasrtgc slprvmvyre rsqsqgetqy qreassrvag dgragdapqq dstlyppehs
      181 vsvlsrlssa tpppsyeevt ghpesssgee tsisyndppp kyeeivatap vagk
//
LOCUS       XP_009570288             231 aa            linear   VRT 09-MAR-2023
DEFINITION  claudin-2 [Cuculus canorus].
ACCESSION   XP_009570288
VERSION     XP_009570288.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009571993.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009570288.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..231
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..231
                     /product="claudin-2"
                     /calculated_mol_wt=24626
     Region          4..181
                     /region_name="PMP22_Claudin"
                     /note="PMP-22/EMP/MP20/Claudin family; cl21598"
                     /db_xref="CDD:473919"
     CDS             1..231
                     /gene="CLDN2"
                     /coded_by="XM_009571993.2:328..1023"
                     /db_xref="GeneID:104069027"
ORIGIN      
        1 mvsmglqllg ytvaflgyig tltttllpsw kissyigssi vtavsftkgl wmecatystg
       61 itqcdiyssl lnlpadiqaa qalmvsscav sslaslltim gmrctvfnqg spskdrvavg
      121 ggvvfilggl lcfiplvwni hvvlqdfhnp tipdstkfel gealylgiis sllsfiggfi
      181 lctscpardp tatygstyqp rllagksprp svnqmqktrs emnsynltgy v
//
LOCUS       XP_053931620             201 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related protein Rab-9B [Cuculus canorus].
ACCESSION   XP_053931620
VERSION     XP_053931620.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075645.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..201
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..201
                     /product="ras-related protein Rab-9B"
                     /calculated_mol_wt=22641
     Region          3..172
                     /region_name="Rab9"
                     /note="Rab GTPase family 9 (Rab9); cd04116"
                     /db_xref="CDD:206697"
     Site            4..9
                     /site_type="other"
                     /note="Rab subfamily motif 1 (RabSF1)"
                     /db_xref="CDD:206697"
     Site            14..21
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206697"
     Site            order(17..22,32..34,38..39,65,124..125,127,154..156)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206697"
     Site            order(22..33,35..38)
                     /site_type="other"
                     /note="Rab subfamily motif 2 (RabSF2)"
                     /db_xref="CDD:206697"
     Site            order(32,37..45)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206697"
     Site            order(37,41..48,55,57)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206697"
     Site            39
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206697"
     Site            order(40,42..44,59,61,68..69,72,76,78..81,172)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206697"
     Site            order(40..41,43,61..62,69,71,73..75)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206697"
     Site            40..44
                     /site_type="other"
                     /note="Rab family motif 1 (RabF1)"
                     /db_xref="CDD:206697"
     Site            57..61
                     /site_type="other"
                     /note="Rab family motif 2 (RabF2)"
                     /db_xref="CDD:206697"
     Site            62..65
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206697"
     Site            order(65,67..77)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206697"
     Site            68..73
                     /site_type="other"
                     /note="Rab family motif 3 (RabF3)"
                     /db_xref="CDD:206697"
     Site            76..80
                     /site_type="other"
                     /note="Rab family motif 4 (RabF4)"
                     /db_xref="CDD:206697"
     Site            85..90
                     /site_type="other"
                     /note="Rab family motif 5 (RabF5)"
                     /db_xref="CDD:206697"
     Site            order(108..112,115..121)
                     /site_type="other"
                     /note="Rab subfamily motif 3 (RabSF3)"
                     /db_xref="CDD:206697"
     Site            124..127
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206697"
     Site            154..156
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206697"
     Site            170..172
                     /site_type="other"
                     /note="Rab subfamily motif 4 (RabSF4)"
                     /db_xref="CDD:206697"
     CDS             1..201
                     /gene="RAB9B"
                     /coded_by="XM_054075645.1:490..1095"
                     /db_xref="GeneID:104069021"
ORIGIN      
        1 msgkslllkv illgdggvgk sslmnryvtn kfdsqafhti gveflnrdle vdgrfvtlqi
       61 wdtagqerfk slrtpfyrga dcclltfsvd drqsfenlsn wqkefvyyad vkdpehfpfv
      121 vlgnkidkle rqvsteeaqt wcmengnypy letsakddtn vavafeeavr qvlaveeqle
      181 hcmlghtidl hsssksgssc c
//
LOCUS       XP_053931621             201 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related protein Rab-9B [Cuculus canorus].
ACCESSION   XP_053931621
VERSION     XP_053931621.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075646.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..201
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..201
                     /product="ras-related protein Rab-9B"
                     /calculated_mol_wt=22641
     Region          3..172
                     /region_name="Rab9"
                     /note="Rab GTPase family 9 (Rab9); cd04116"
                     /db_xref="CDD:206697"
     Site            4..9
                     /site_type="other"
                     /note="Rab subfamily motif 1 (RabSF1)"
                     /db_xref="CDD:206697"
     Site            14..21
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206697"
     Site            order(17..22,32..34,38..39,65,124..125,127,154..156)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206697"
     Site            order(22..33,35..38)
                     /site_type="other"
                     /note="Rab subfamily motif 2 (RabSF2)"
                     /db_xref="CDD:206697"
     Site            order(32,37..45)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206697"
     Site            order(37,41..48,55,57)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206697"
     Site            39
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206697"
     Site            order(40,42..44,59,61,68..69,72,76,78..81,172)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206697"
     Site            order(40..41,43,61..62,69,71,73..75)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206697"
     Site            40..44
                     /site_type="other"
                     /note="Rab family motif 1 (RabF1)"
                     /db_xref="CDD:206697"
     Site            57..61
                     /site_type="other"
                     /note="Rab family motif 2 (RabF2)"
                     /db_xref="CDD:206697"
     Site            62..65
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206697"
     Site            order(65,67..77)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206697"
     Site            68..73
                     /site_type="other"
                     /note="Rab family motif 3 (RabF3)"
                     /db_xref="CDD:206697"
     Site            76..80
                     /site_type="other"
                     /note="Rab family motif 4 (RabF4)"
                     /db_xref="CDD:206697"
     Site            85..90
                     /site_type="other"
                     /note="Rab family motif 5 (RabF5)"
                     /db_xref="CDD:206697"
     Site            order(108..112,115..121)
                     /site_type="other"
                     /note="Rab subfamily motif 3 (RabSF3)"
                     /db_xref="CDD:206697"
     Site            124..127
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206697"
     Site            154..156
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206697"
     Site            170..172
                     /site_type="other"
                     /note="Rab subfamily motif 4 (RabSF4)"
                     /db_xref="CDD:206697"
     CDS             1..201
                     /gene="RAB9B"
                     /coded_by="XM_054075646.1:626..1231"
                     /db_xref="GeneID:104069021"
ORIGIN      
        1 msgkslllkv illgdggvgk sslmnryvtn kfdsqafhti gveflnrdle vdgrfvtlqi
       61 wdtagqerfk slrtpfyrga dcclltfsvd drqsfenlsn wqkefvyyad vkdpehfpfv
      121 vlgnkidkle rqvsteeaqt wcmengnypy letsakddtn vavafeeavr qvlaveeqle
      181 hcmlghtidl hsssksgssc c
//
LOCUS       XP_053931622             201 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related protein Rab-9B [Cuculus canorus].
ACCESSION   XP_053931622
VERSION     XP_053931622.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075647.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..201
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..201
                     /product="ras-related protein Rab-9B"
                     /calculated_mol_wt=22641
     Region          3..172
                     /region_name="Rab9"
                     /note="Rab GTPase family 9 (Rab9); cd04116"
                     /db_xref="CDD:206697"
     Site            4..9
                     /site_type="other"
                     /note="Rab subfamily motif 1 (RabSF1)"
                     /db_xref="CDD:206697"
     Site            14..21
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206697"
     Site            order(17..22,32..34,38..39,65,124..125,127,154..156)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206697"
     Site            order(22..33,35..38)
                     /site_type="other"
                     /note="Rab subfamily motif 2 (RabSF2)"
                     /db_xref="CDD:206697"
     Site            order(32,37..45)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206697"
     Site            order(37,41..48,55,57)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206697"
     Site            39
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206697"
     Site            order(40,42..44,59,61,68..69,72,76,78..81,172)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206697"
     Site            order(40..41,43,61..62,69,71,73..75)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206697"
     Site            40..44
                     /site_type="other"
                     /note="Rab family motif 1 (RabF1)"
                     /db_xref="CDD:206697"
     Site            57..61
                     /site_type="other"
                     /note="Rab family motif 2 (RabF2)"
                     /db_xref="CDD:206697"
     Site            62..65
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206697"
     Site            order(65,67..77)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206697"
     Site            68..73
                     /site_type="other"
                     /note="Rab family motif 3 (RabF3)"
                     /db_xref="CDD:206697"
     Site            76..80
                     /site_type="other"
                     /note="Rab family motif 4 (RabF4)"
                     /db_xref="CDD:206697"
     Site            85..90
                     /site_type="other"
                     /note="Rab family motif 5 (RabF5)"
                     /db_xref="CDD:206697"
     Site            order(108..112,115..121)
                     /site_type="other"
                     /note="Rab subfamily motif 3 (RabSF3)"
                     /db_xref="CDD:206697"
     Site            124..127
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206697"
     Site            154..156
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206697"
     Site            170..172
                     /site_type="other"
                     /note="Rab subfamily motif 4 (RabSF4)"
                     /db_xref="CDD:206697"
     CDS             1..201
                     /gene="RAB9B"
                     /coded_by="XM_054075647.1:360..965"
                     /db_xref="GeneID:104069021"
ORIGIN      
        1 msgkslllkv illgdggvgk sslmnryvtn kfdsqafhti gveflnrdle vdgrfvtlqi
       61 wdtagqerfk slrtpfyrga dcclltfsvd drqsfenlsn wqkefvyyad vkdpehfpfv
      121 vlgnkidkle rqvsteeaqt wcmengnypy letsakddtn vavafeeavr qvlaveeqle
      181 hcmlghtidl hsssksgssc c
//
LOCUS       XP_053931623             190 aa            linear   VRT 09-MAR-2023
DEFINITION  dynein axonemal assembly factor 6 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931623
VERSION     XP_053931623.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075648.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..190
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..190
                     /product="dynein axonemal assembly factor 6 isoform X1"
                     /calculated_mol_wt=21358
     Region          86..181
                     /region_name="PIH1_CS"
                     /note="PIH1 CS-like domain; pfam18201"
                     /db_xref="CDD:408028"
     CDS             1..190
                     /gene="DNAAF6"
                     /coded_by="XM_054075648.1:232..804"
                     /db_xref="GeneID:104069053"
ORIGIN      
        1 mdsvsagssl qflakllcdg qeddddeenv phcsvsamtp ggigpvkkea tgsfqvksen
       61 rntiwnteev pegsefddtw dpreqpeyqi lfkqcvgted vffgmsrkdp staccedmvi
      121 kiklpetkys ditldiqdkv ldlrtpkkkl llhlpyhvds kngkarflse eetlevtlrv
      181 srefdfinfa
//
LOCUS       XP_053931624             153 aa            linear   VRT 09-MAR-2023
DEFINITION  dynein axonemal assembly factor 6 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931624
VERSION     XP_053931624.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075649.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..153
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..153
                     /product="dynein axonemal assembly factor 6 isoform X2"
                     /calculated_mol_wt=17463
     Region          49..144
                     /region_name="PIH1_CS"
                     /note="PIH1 CS-like domain; pfam18201"
                     /db_xref="CDD:408028"
     CDS             1..153
                     /gene="DNAAF6"
                     /coded_by="XM_054075649.1:313..774"
                     /db_xref="GeneID:104069053"
ORIGIN      
        1 mtpggigpvk keatgsfqvk senrntiwnt eevpegsefd dtwdpreqpe yqilfkqcvg
       61 tedvffgmsr kdpstacced mvikiklpet kysditldiq dkvldlrtpk kklllhlpyh
      121 vdskngkarf lseeetlevt lrvsrefdfi nfa
//
LOCUS       XP_053931625             190 aa            linear   VRT 09-MAR-2023
DEFINITION  dynein axonemal assembly factor 6 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931625
VERSION     XP_053931625.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075650.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..190
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..190
                     /product="dynein axonemal assembly factor 6 isoform X1"
                     /calculated_mol_wt=21358
     Region          86..181
                     /region_name="PIH1_CS"
                     /note="PIH1 CS-like domain; pfam18201"
                     /db_xref="CDD:408028"
     CDS             1..190
                     /gene="DNAAF6"
                     /coded_by="XM_054075650.1:162..734"
                     /db_xref="GeneID:104069053"
ORIGIN      
        1 mdsvsagssl qflakllcdg qeddddeenv phcsvsamtp ggigpvkkea tgsfqvksen
       61 rntiwnteev pegsefddtw dpreqpeyqi lfkqcvgted vffgmsrkdp staccedmvi
      121 kiklpetkys ditldiqdkv ldlrtpkkkl llhlpyhvds kngkarflse eetlevtlrv
      181 srefdfinfa
//
LOCUS       XP_053931626              45 aa            linear   VRT 09-MAR-2023
DEFINITION  thymosin beta-15A homolog [Cuculus canorus].
ACCESSION   XP_053931626
VERSION     XP_053931626.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075651.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..45
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..45
                     /product="thymosin beta-15A homolog"
                     /calculated_mol_wt=5114
     Region          3..39
                     /region_name="Thymosin"
                     /note="Thymosin beta-4 family; cl27586"
                     /db_xref="CDD:421525"
     CDS             1..45
                     /gene="LOC104069022"
                     /coded_by="XM_054075651.1:112..249"
                     /db_xref="GeneID:104069022"
ORIGIN      
        1 mcdkpdlsev ekfdkkklkk tnteekntlp sketieqeke cvkss
//
LOCUS       XP_053931628             296 aa            linear   VRT 09-MAR-2023
DEFINITION  BTB/POZ domain-containing protein KCTD12 isoform X1 [Cuculus
            canorus].
ACCESSION   XP_053931628
VERSION     XP_053931628.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075653.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..296
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..296
                     /product="BTB/POZ domain-containing protein KCTD12 isoform
                     X1"
                     /calculated_mol_wt=33154
     Region          18..117
                     /region_name="BTB_POZ_KCTD8-like"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     channel tetramerization domain-containing proteins, KCTD8,
                     KCTD12, KCTD16 and similar proteins; cd18367"
                     /db_xref="CDD:349676"
     Site            order(25,27..28,59..62,65,67,69..71,73..74,93..98,101,105)
                     /site_type="other"
                     /note="putative homodimer interface [polypeptide binding]"
                     /db_xref="CDD:349676"
     Region          178..295
                     /region_name="H1_KCTD12b"
                     /note="H1 domain found in potassium channel
                     tetramerization domain-containing protein 12b; cd22216"
                     /db_xref="CDD:409027"
     Site            order(181..182,184,188,191,200,202..204,210,212..213,230,
                     239,241..242,249,251..252,254..255,258,264,266..273,285,
                     287,290..291,293)
                     /site_type="other"
                     /note="putative pentamer interface [polypeptide binding]"
                     /db_xref="CDD:409027"
     Site            order(205,227,229..230,233..234,236,242,244,249,284)
                     /site_type="other"
                     /note="putative G protein beta subunit interface
                     [polypeptide binding]"
                     /db_xref="CDD:409027"
     CDS             1..296
                     /gene="LOC104066239"
                     /coded_by="XM_054075653.1:110..1000"
                     /db_xref="GeneID:104066239"
ORIGIN      
        1 maladntgca kpnedfpfpe iielnvggqv yitrhptlvs vpgsllwemf tqknvhslar
       61 dskgrffvdr dgflfryild ymrdqqlvlp dhfpernrlq reaeyfmlpe lvkmlapkls
      121 kqnslgddpc qsdpeelspn tdatrnltsa samlpsavtg gpggsvttgv gatgtdvrra
      181 gfitigyrgs ytlgrdsqtd akfrrvarim vcgktslake vfgdtlnesr dpdrpperyt
      241 sryylkftfl eqafdklada gfhmvacnst gtcafahdqt ddriwtsyte yvfyre
//
LOCUS       XP_053931629             248 aa            linear   VRT 09-MAR-2023
DEFINITION  BTB/POZ domain-containing protein KCTD12 isoform X2 [Cuculus
            canorus].
ACCESSION   XP_053931629
VERSION     XP_053931629.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075654.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..248
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..248
                     /product="BTB/POZ domain-containing protein KCTD12 isoform
                     X2"
                     /calculated_mol_wt=27503
     Region          18..117
                     /region_name="BTB_POZ_KCTD8-like"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in potassium
                     channel tetramerization domain-containing proteins, KCTD8,
                     KCTD12, KCTD16 and similar proteins; cd18367"
                     /db_xref="CDD:349676"
     Site            order(25,27..28,59..62,65,67,69..71,73..74,93..98,101,105)
                     /site_type="other"
                     /note="putative homodimer interface [polypeptide binding]"
                     /db_xref="CDD:349676"
     Region          178..>243
                     /region_name="H1_KCTD12-like"
                     /note="H1 domain found in potassium channel
                     tetramerization domain-containing proteins; cl41727"
                     /db_xref="CDD:425358"
     CDS             1..248
                     /gene="LOC104066239"
                     /coded_by="XM_054075654.1:110..856"
                     /db_xref="GeneID:104066239"
ORIGIN      
        1 maladntgca kpnedfpfpe iielnvggqv yitrhptlvs vpgsllwemf tqknvhslar
       61 dskgrffvdr dgflfryild ymrdqqlvlp dhfpernrlq reaeyfmlpe lvkmlapkls
      121 kqnslgddpc qsdpeelspn tdatrnltsa samlpsavtg gpggsvttgv gatgtdvrra
      181 gfitigyrgs ytlgrdsqtd akfrrvarim vcgktslake vfgdtlnesr dpdrpperyt
      241 srhlclrp
//
LOCUS       XP_053931630             154 aa            linear   VRT 09-MAR-2023
DEFINITION  BTB/POZ domain-containing protein KCTD16-like [Cuculus canorus].
ACCESSION   XP_053931630
VERSION     XP_053931630.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075655.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..154
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..154
                     /product="BTB/POZ domain-containing protein KCTD16-like"
                     /calculated_mol_wt=16960
     CDS             1..154
                     /gene="LOC128853155"
                     /coded_by="XM_054075655.1:90..554"
                     /db_xref="GeneID:128853155"
ORIGIN      
        1 mrqdpaspsm gddfetsdtn ghgepspasn adntlpgrds qlevrdpspt nslpwpeapg
       61 ecpvrpntld iskslkklee vkqmgqrrns dhtaakengv evspaaavvv seerralqse
      121 lgkciedfrk ikipvvfpnk krqwqsellk kykl
//
LOCUS       XP_053931631             154 aa            linear   VRT 09-MAR-2023
DEFINITION  BTB/POZ domain-containing protein KCTD16-like [Cuculus canorus].
ACCESSION   XP_053931631
VERSION     XP_053931631.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075656.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..154
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..154
                     /product="BTB/POZ domain-containing protein KCTD16-like"
                     /calculated_mol_wt=16960
     CDS             1..154
                     /gene="LOC128853155"
                     /coded_by="XM_054075656.1:163..627"
                     /db_xref="GeneID:128853155"
ORIGIN      
        1 mrqdpaspsm gddfetsdtn ghgepspasn adntlpgrds qlevrdpspt nslpwpeapg
       61 ecpvrpntld iskslkklee vkqmgqrrns dhtaakengv evspaaavvv seerralqse
      121 lgkciedfrk ikipvvfpnk krqwqsellk kykl
//
LOCUS       XP_053931633             507 aa            linear   VRT 09-MAR-2023
DEFINITION  actin-binding protein WASF3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931633
VERSION     XP_053931633.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075658.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..507
                     /product="actin-binding protein WASF3 isoform X1"
                     /calculated_mol_wt=55974
     Region          442..507
                     /region_name="WH2"
                     /note="Wiskott-Aldrich Syndrome Homology (WASP) region 2
                     (WH2 motif), and similar proteins; cl41728"
                     /db_xref="CDD:425359"
     Site            order(445..446,448..450,452..454,459..462)
                     /site_type="other"
                     /note="actin-binding motif [polypeptide binding]"
                     /db_xref="CDD:409196"
     CDS             1..507
                     /gene="LOC104058414"
                     /coded_by="XM_054075658.1:369..1892"
                     /db_xref="GeneID:104058414"
ORIGIN      
        1 mplvkrniep rhlcrgalpe gvtselecvt nstlaaiikq lgslsrhaed ifgelfnean
       61 sfymrmnslq ervdllvikv tqldstveev slqdinmrka fksstvqnqq vvsrnsipnp
      121 vmemyqrcdk ppplniltpy rddkkdglkf ytdpsyffnl wkekmlqate dkrkekrrqk
      181 eqrlvedstr evkkvrkarn rrlewnmmay dkefrpdnrf spspyhmass egslspdnrs
      241 yasdvadhsy paspnhpaql lapashlapa ehkegvvvaa spqehvyrpa pmagsrqnsl
      301 nrlqqphvpq ppeailngpr phlvkdygpq pvpmaeyfvp pappppppvi psaqtafdsp
      361 isappalapg sagppsyaps pppappgpys asppqagpmg ppvapppppp gppavsaspa
      421 hsasppaptm eprkpqiplm pmsdarsdll aairrgiqlr kvqeqweqea kkepvgndva
      481 tilsrriave ysesdddsel ddnewsd
//
LOCUS       XP_053931634             507 aa            linear   VRT 09-MAR-2023
DEFINITION  actin-binding protein WASF3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931634
VERSION     XP_053931634.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075659.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..507
                     /product="actin-binding protein WASF3 isoform X1"
                     /calculated_mol_wt=55974
     Region          442..507
                     /region_name="WH2"
                     /note="Wiskott-Aldrich Syndrome Homology (WASP) region 2
                     (WH2 motif), and similar proteins; cl41728"
                     /db_xref="CDD:425359"
     Site            order(445..446,448..450,452..454,459..462)
                     /site_type="other"
                     /note="actin-binding motif [polypeptide binding]"
                     /db_xref="CDD:409196"
     CDS             1..507
                     /gene="LOC104058414"
                     /coded_by="XM_054075659.1:148..1671"
                     /db_xref="GeneID:104058414"
ORIGIN      
        1 mplvkrniep rhlcrgalpe gvtselecvt nstlaaiikq lgslsrhaed ifgelfnean
       61 sfymrmnslq ervdllvikv tqldstveev slqdinmrka fksstvqnqq vvsrnsipnp
      121 vmemyqrcdk ppplniltpy rddkkdglkf ytdpsyffnl wkekmlqate dkrkekrrqk
      181 eqrlvedstr evkkvrkarn rrlewnmmay dkefrpdnrf spspyhmass egslspdnrs
      241 yasdvadhsy paspnhpaql lapashlapa ehkegvvvaa spqehvyrpa pmagsrqnsl
      301 nrlqqphvpq ppeailngpr phlvkdygpq pvpmaeyfvp pappppppvi psaqtafdsp
      361 isappalapg sagppsyaps pppappgpys asppqagpmg ppvapppppp gppavsaspa
      421 hsasppaptm eprkpqiplm pmsdarsdll aairrgiqlr kvqeqweqea kkepvgndva
      481 tilsrriave ysesdddsel ddnewsd
//
LOCUS       XP_053931635             487 aa            linear   VRT 09-MAR-2023
DEFINITION  actin-binding protein WASF3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931635
VERSION     XP_053931635.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075660.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..487
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..487
                     /product="actin-binding protein WASF3 isoform X2"
                     /calculated_mol_wt=53825
     Region          422..487
                     /region_name="WH2"
                     /note="Wiskott-Aldrich Syndrome Homology (WASP) region 2
                     (WH2 motif), and similar proteins; cl41728"
                     /db_xref="CDD:425359"
     Site            order(425..426,428..430,432..434,439..442)
                     /site_type="other"
                     /note="actin-binding motif [polypeptide binding]"
                     /db_xref="CDD:409196"
     CDS             1..487
                     /gene="LOC104058414"
                     /coded_by="XM_054075660.1:369..1832"
                     /db_xref="GeneID:104058414"
ORIGIN      
        1 mplvkrniep rhlcrgalpe gvtselecvt nstlaaiikq lgslsrhaed ifgelfnean
       61 sfymrmnslq ervdllvikv tqldstveev slqdinmrka fksstvqnqq vvsrnsipnp
      121 vmemyqrcdk ppplniltpy rddkkdglkf ytdpsyffnl wkekmlqate dkrkekrrqk
      181 eqrlvedstr evkkvrkarn rrlewnmmay dkefrpdnrs yasdvadhsy paspnhpaql
      241 lapashlapa ehkegvvvaa spqehvyrpa pmagsrqnsl nrlqqphvpq ppeailngpr
      301 phlvkdygpq pvpmaeyfvp pappppppvi psaqtafdsp isappalapg sagppsyaps
      361 pppappgpys asppqagpmg ppvapppppp gppavsaspa hsasppaptm eprkpqiplm
      421 pmsdarsdll aairrgiqlr kvqeqweqea kkepvgndva tilsrriave ysesdddsel
      481 ddnewsd
//
LOCUS       XP_009560801             646 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane 9 superfamily member 2 [Cuculus canorus].
ACCESSION   XP_009560801
VERSION     XP_009560801.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009562506.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009560801.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..646
                     /product="transmembrane 9 superfamily member 2"
                     /calculated_mol_wt=73832
     Region          57..602
                     /region_name="EMP70"
                     /note="Endomembrane protein 70; pfam02990"
                     /db_xref="CDD:460774"
     CDS             1..646
                     /gene="LOC104060681"
                     /coded_by="XM_009562506.2:93..2033"
                     /db_xref="GeneID:104060681"
ORIGIN      
        1 mrllaagfll aaplcaafyl pglapvsfce egeesegcks lielfvnrld svesvlpyey
       61 dafdfcqdte ekrpsenlgq vlfgeriass pykftfkkqe tckkvctrsy dpgnsadktk
      121 laflkkgmql nyqhhwiidn mpvtwcydve dgqkycnpgf pigcfvtpdg rvkdacvins
      181 efnkkntfyl fnhvditimy hsgkdenwpg arlvmarlrp qsykhtdenn lscegppmei
      241 pgeftnklnl iytysvtfee knnikwasrw dyilesmpht niqwfsimns lvivlflsgm
      301 vamiilrtlh kdiarynqid ssedaqeefg wklvhgdvfr pprkgmllsv flgqgtqifi
      361 mtfitlflac lgflspanrg almtcavvlw vllgtpagyv sarmyktfrg ekwktnvllt
      421 allcpgivfa dffimnlilw vkgssaaipf gtlvailamw fgisvpltfv gayfgfkekp
      481 iehpvrtnqi prqipeqsff tkplpgiimg gilpfgcifi qlffilnsiw shqmyymfgf
      541 lflvfiilli tcseatvllc yfhlcaedyh wwwrsfltss ftavylfiya vhyffsklqi
      601 tgtastilyf gytmimvlif flftgtigff acfwfvskiy svvkvd
//
LOCUS       XP_053931636             970 aa            linear   VRT 09-MAR-2023
DEFINITION  testis-expressed protein 11 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931636
VERSION     XP_053931636.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075661.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..970
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..970
                     /product="testis-expressed protein 11 isoform X1"
                     /calculated_mol_wt=109166
     Region          188..442
                     /region_name="SPO22"
                     /note="Meiosis protein SPO22/ZIP4 like; pfam08631"
                     /db_xref="CDD:462542"
     Region          418..450
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(420..421,424..425,427,457,460..461,464..465,
                     467..468,491,494..495,498..499,502)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          <450..>578
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          455..485
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..970
                     /gene="TEX11"
                     /coded_by="XM_054075661.1:136..3048"
                     /db_xref="GeneID:104069033"
ORIGIN      
        1 maealegpar rslpgersgd aappaclial vqellkeevp srvaaliekl feaagslaga
       61 rggaaeieec aislwnwtvt khtasvinde qraklrfvac rlvclcegsd pseatirrqi
      121 lmsmktgkgw idigkadlad gfleiamssi eklyaklleg sngeadihah kadveksvfk
      181 vlsyqaesav aqgdfqramt cvqrckdmlm klpketcyls ilcynfgvet yeqkkyeqss
      241 fwlsqsydig kmdmkytvgk emqakvlrll atayfewdcs lyldkalkai nlanqenlhp
      301 agfflkvkil lksgasdedi nsavseflhh emsldfclni aklllehgre svgfdflksv
      361 perfqsspdl gkitllhief llqnkrella kqkieeiiig hytgkqllpe alnklhiilw
      421 draakhyeak sysealhwyn ysasfytpgq idqnlaklqr nmascylhlk qvdkakeavk
      481 eaercdpssi ftkfsvykia vmekdtdkav eaviemgkla ekssqcedkl rldentgtnl
      541 lslaaqiale neqqvvaika leylsahlqd crqlfaalkc lvrlmlskim seseekrded
      601 igsmltylal ahkrlaesft eekftgdari leahwfrkva wnlavqfnsc pekmrdffll
      661 sfklsqfcps dkavliaqrt cllmaaavdl emgrqqvkps eqaelltqal qhlqtckevw
      721 kvlkftgdfa kdptdtllll yefearskln dptlhnfmes vweqpqievk tleiiaslam
      781 esparypvlc kkalksalni hrkqpvidav kfskclhsli nlslptgvtd ldacvlqevw
      841 gyfedglsvv sstdaypete vlwlmtrawn tgifqytvgk ykeaeqwcgl gmrflnqlgs
      901 lkksyeghpp aqslspsltq isccsllcys gplvllhrqr yqsllcltep grlaggwprr
      961 etlpkhlvpf
//
LOCUS       XP_053931637             943 aa            linear   VRT 09-MAR-2023
DEFINITION  testis-expressed protein 11 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931637
VERSION     XP_053931637.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075662.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..943
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..943
                     /product="testis-expressed protein 11 isoform X2"
                     /calculated_mol_wt=106085
     Region          182..415
                     /region_name="SPO22"
                     /note="Meiosis protein SPO22/ZIP4 like; pfam08631"
                     /db_xref="CDD:462542"
     Region          391..423
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(393..394,397..398,400,430,433..434,437..438,
                     440..441,464,467..468,471..472,475)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          <423..>551
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          428..458
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..943
                     /gene="TEX11"
                     /coded_by="XM_054075662.1:136..2967"
                     /db_xref="GeneID:104069033"
ORIGIN      
        1 maealegpar rslpgersgd aappaclial vqellkeevp srvaaliekl feaagslaga
       61 rggaaeieec aislwnwtvt khtasvinde qraklrfvac rlvclcegsd pseatirrqi
      121 lmsmktgkgw idigkadlad gfleiamssi eklyaklleg sngeadihah kadveksvfk
      181 vlsyqaestc ylsilcynfg vetyeqkkye qssfwlsqsy digkmdmkyt vgkemqakvl
      241 rllatayfew dcslyldkal kainlanqen lhpagfflkv killksgasd edinsavsef
      301 lhhemsldfc lniakllleh gresvgfdfl ksvperfqss pdlgkitllh iefllqnkre
      361 llakqkieei iighytgkql lpealnklhi ilwdraakhy eaksysealh wynysasfyt
      421 pgqidqnlak lqrnmascyl hlkqvdkake avkeaercdp ssiftkfsvy kiavmekdtd
      481 kaveaviemg klaekssqce dklrldentg tnllslaaqi aleneqqvva ikaleylsah
      541 lqdcrqlfaa lkclvrlmls kimseseekr dedigsmlty lalahkrlae sfteekftgd
      601 arileahwfr kvawnlavqf nscpekmrdf fllsfklsqf cpsdkavlia qrtcllmaaa
      661 vdlemgrqqv kpseqaellt qalqhlqtck evwkvlkftg dfakdptdtl lllyefears
      721 klndptlhnf mesvweqpqi evktleiias lamesparyp vlckkalksa lnihrkqpvi
      781 davkfskclh slinlslptg vtdldacvlq evwgyfedgl svvsstdayp etevlwlmtr
      841 awntgifqyt vgkykeaeqw cglgmrflnq lgslkksyeg hppaqslsps ltqisccsll
      901 cysgplvllh rqryqsllcl tepgrlaggw prretlpkhl vpf
//
LOCUS       XP_053931638             938 aa            linear   VRT 09-MAR-2023
DEFINITION  testis-expressed protein 11 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931638
VERSION     XP_053931638.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075663.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..938
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..938
                     /product="testis-expressed protein 11 isoform X3"
                     /calculated_mol_wt=105528
     Region          188..410
                     /region_name="SPO22"
                     /note="Meiosis protein SPO22/ZIP4 like; pfam08631"
                     /db_xref="CDD:462542"
     Region          386..418
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(388..389,392..393,395,425,428..429,432..433,
                     435..436,459,462..463,466..467,470)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          <418..>546
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          423..453
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..938
                     /gene="TEX11"
                     /coded_by="XM_054075663.1:136..2952"
                     /db_xref="GeneID:104069033"
ORIGIN      
        1 maealegpar rslpgersgd aappaclial vqellkeevp srvaaliekl feaagslaga
       61 rggaaeieec aislwnwtvt khtasvinde qraklrfvac rlvclcegsd pseatirrqi
      121 lmsmktgkgw idigkadlad gfleiamssi eklyaklleg sngeadihah kadveksvfk
      181 vlsyqaesav aqgdfqramt cvqrckdmlm klpketcyls ilcynfgvet yeqkkyeqss
      241 fwlsqsydig kmdmkytvgk emqenlhpag fflkvkillk sgasdedins avseflhhem
      301 sldfclniak lllehgresv gfdflksvpe rfqsspdlgk itllhiefll qnkrellakq
      361 kieeiiighy tgkqllpeal nklhiilwdr aakhyeaksy sealhwynys asfytpgqid
      421 qnlaklqrnm ascylhlkqv dkakeavkea ercdpssift kfsvykiavm ekdtdkavea
      481 viemgklaek ssqcedklrl dentgtnlls laaqialene qqvvaikale ylsahlqdcr
      541 qlfaalkclv rlmlskimse seekrdedig smltylalah krlaesftee kftgdarile
      601 ahwfrkvawn lavqfnscpe kmrdffllsf klsqfcpsdk avliaqrtcl lmaaavdlem
      661 grqqvkpseq aelltqalqh lqtckevwkv lkftgdfakd ptdtllllye fearsklndp
      721 tlhnfmesvw eqpqievktl eiiaslames parypvlckk alksalnihr kqpvidavkf
      781 skclhslinl slptgvtdld acvlqevwgy fedglsvvss tdaypetevl wlmtrawntg
      841 ifqytvgkyk eaeqwcglgm rflnqlgslk ksyeghppaq slspsltqis ccsllcysgp
      901 lvllhrqryq sllcltepgr laggwprret lpkhlvpf
//
LOCUS       XP_053931639             932 aa            linear   VRT 09-MAR-2023
DEFINITION  testis-expressed protein 11 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931639
VERSION     XP_053931639.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075664.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..932
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..932
                     /product="testis-expressed protein 11 isoform X4"
                     /calculated_mol_wt=105016
     Region          188..442
                     /region_name="SPO22"
                     /note="Meiosis protein SPO22/ZIP4 like; pfam08631"
                     /db_xref="CDD:462542"
     Region          418..450
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(420..421,424..425,427,457,460..461,464..465,
                     467..468,491,494..495,498..499,502)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          <450..>578
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          455..485
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..932
                     /gene="TEX11"
                     /coded_by="XM_054075664.1:136..2934"
                     /db_xref="GeneID:104069033"
ORIGIN      
        1 maealegpar rslpgersgd aappaclial vqellkeevp srvaaliekl feaagslaga
       61 rggaaeieec aislwnwtvt khtasvinde qraklrfvac rlvclcegsd pseatirrqi
      121 lmsmktgkgw idigkadlad gfleiamssi eklyaklleg sngeadihah kadveksvfk
      181 vlsyqaesav aqgdfqramt cvqrckdmlm klpketcyls ilcynfgvet yeqkkyeqss
      241 fwlsqsydig kmdmkytvgk emqakvlrll atayfewdcs lyldkalkai nlanqenlhp
      301 agfflkvkil lksgasdedi nsavseflhh emsldfclni aklllehgre svgfdflksv
      361 perfqsspdl gkitllhief llqnkrella kqkieeiiig hytgkqllpe alnklhiilw
      421 draakhyeak sysealhwyn ysasfytpgq idqnlaklqr nmascylhlk qvdkakeavk
      481 eaercdpssi ftkfsvykia vmekdtdkav eaviemgkla ekssqcedkl rldentgtnl
      541 lslaaqiale neqqvvaika leylsahlqd crqlfaalkc lvrlmlskim seseekrded
      601 igsmltylal ahkrlaesft eekftgdari leahwfrkva wnlavqfnsc pekmrdffll
      661 sfklsqfcps dkavliaqrt cllmaaavdl emgrqqvkps eqaelltqal qhlqtckevw
      721 kvlkftgdfa kdptdtllll yefearskln dptlhnfmes vweqpqievk tleiiaslam
      781 esparypvlc kkalksalni hrkqpvidav kfskclhsli nlslptgvtd ldacvlqevw
      841 gyfedglsvv sstdaypete vlwlmtrawn tgifqytvgk ykeaeqwcgl gmrflnqlgs
      901 lkksyeghmi glysevldkl drakgflpnv ee
//
LOCUS       XP_053931641             912 aa            linear   VRT 09-MAR-2023
DEFINITION  testis-expressed protein 11 isoform X5 [Cuculus canorus].
ACCESSION   XP_053931641
VERSION     XP_053931641.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075666.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..912
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..912
                     /product="testis-expressed protein 11 isoform X5"
                     /calculated_mol_wt=102670
     Region          188..442
                     /region_name="SPO22"
                     /note="Meiosis protein SPO22/ZIP4 like; pfam08631"
                     /db_xref="CDD:462542"
     Region          418..450
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(420..421,424..425,427,457,460..461,464..465,
                     467..468,491,494..495,498..499,502)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          <450..>578
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          455..485
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..912
                     /gene="TEX11"
                     /coded_by="XM_054075666.1:136..2874"
                     /db_xref="GeneID:104069033"
ORIGIN      
        1 maealegpar rslpgersgd aappaclial vqellkeevp srvaaliekl feaagslaga
       61 rggaaeieec aislwnwtvt khtasvinde qraklrfvac rlvclcegsd pseatirrqi
      121 lmsmktgkgw idigkadlad gfleiamssi eklyaklleg sngeadihah kadveksvfk
      181 vlsyqaesav aqgdfqramt cvqrckdmlm klpketcyls ilcynfgvet yeqkkyeqss
      241 fwlsqsydig kmdmkytvgk emqakvlrll atayfewdcs lyldkalkai nlanqenlhp
      301 agfflkvkil lksgasdedi nsavseflhh emsldfclni aklllehgre svgfdflksv
      361 perfqsspdl gkitllhief llqnkrella kqkieeiiig hytgkqllpe alnklhiilw
      421 draakhyeak sysealhwyn ysasfytpgq idqnlaklqr nmascylhlk qvdkakeavk
      481 eaercdpssi ftkfsvykia vmekdtdkav eaviemgkla ekssqcedkl rldentgtnl
      541 lslaaqiale neqqvvaika leylsahlqd crqlfaalkc lvrlmlskim seseekrded
      601 igsmltylal ahkrlaesft eekftgdari leahwfrkva wnlavqfnsc pekmrdffll
      661 sfklsqfcps dkavliaqrt cllmaaavdl emgrqqvkps eqaelltqal qhlqtckevw
      721 kvlkftgdfa kdptdtllll yefearskln dptlhnfmes vweqpqievk tleiiaslam
      781 esparypvlc kkalksalni hrkqpvidav kfskclhsli nlslptgvtd ldacvlqevw
      841 gyfedglsvv sstdaypete vlwlmtrawn tgifqytvgk ykeaeqwcgl gmrflnqlgs
      901 lkksyeghas sq
//
LOCUS       XP_053931642             856 aa            linear   VRT 09-MAR-2023
DEFINITION  testis-expressed protein 11 isoform X6 [Cuculus canorus].
ACCESSION   XP_053931642
VERSION     XP_053931642.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075667.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..856
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..856
                     /product="testis-expressed protein 11 isoform X6"
                     /calculated_mol_wt=97077
     Region          74..328
                     /region_name="SPO22"
                     /note="Meiosis protein SPO22/ZIP4 like; pfam08631"
                     /db_xref="CDD:462542"
     Region          304..336
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(306..307,310..311,313,343,346..347,350..351,
                     353..354,377,380..381,384..385,388)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          <336..>464
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          341..371
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..856
                     /gene="TEX11"
                     /coded_by="XM_054075667.1:205..2775"
                     /db_xref="GeneID:104069033"
ORIGIN      
        1 mmskelnmsm ktgkgwidig kadladgfle iamssiekly akllegsnge adihahkadv
       61 eksvfkvlsy qaesavaqgd fqramtcvqr ckdmlmklpk etcylsilcy nfgvetyeqk
      121 kyeqssfwls qsydigkmdm kytvgkemqa kvlrllatay fewdcslyld kalkainlan
      181 qenlhpagff lkvkillksg asdedinsav seflhhemsl dfclniakll lehgresvgf
      241 dflksvperf qsspdlgkit llhiefllqn krellakqki eeiiighytg kqllpealnk
      301 lhiilwdraa khyeaksyse alhwynysas fytpgqidqn laklqrnmas cylhlkqvdk
      361 akeavkeaer cdpssiftkf svykiavmek dtdkaveavi emgklaekss qcedklrlde
      421 ntgtnllsla aqialeneqq vvaikaleyl sahlqdcrql faalkclvrl mlskimsese
      481 ekrdedigsm ltylalahkr laesfteekf tgdarileah wfrkvawnla vqfnscpekm
      541 rdffllsfkl sqfcpsdkav liaqrtcllm aaavdlemgr qqvkpseqae lltqalqhlq
      601 tckevwkvlk ftgdfakdpt dtllllyefe arsklndptl hnfmesvweq pqievktlei
      661 iaslamespa rypvlckkal ksalnihrkq pvidavkfsk clhslinlsl ptgvtdldac
      721 vlqevwgyfe dglsvvsstd aypetevlwl mtrawntgif qytvgkykea eqwcglgmrf
      781 lnqlgslkks yeghppaqsl spsltqiscc sllcysgplv llhrqryqsl lcltepgrla
      841 ggwprretlp khlvpf
//
LOCUS       XP_053931643             856 aa            linear   VRT 09-MAR-2023
DEFINITION  testis-expressed protein 11 isoform X6 [Cuculus canorus].
ACCESSION   XP_053931643
VERSION     XP_053931643.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075668.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..856
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..856
                     /product="testis-expressed protein 11 isoform X6"
                     /calculated_mol_wt=97077
     Region          74..328
                     /region_name="SPO22"
                     /note="Meiosis protein SPO22/ZIP4 like; pfam08631"
                     /db_xref="CDD:462542"
     Region          304..336
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(306..307,310..311,313,343,346..347,350..351,
                     353..354,377,380..381,384..385,388)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          <336..>464
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          341..371
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..856
                     /gene="TEX11"
                     /coded_by="XM_054075668.1:194..2764"
                     /db_xref="GeneID:104069033"
ORIGIN      
        1 mmskelnmsm ktgkgwidig kadladgfle iamssiekly akllegsnge adihahkadv
       61 eksvfkvlsy qaesavaqgd fqramtcvqr ckdmlmklpk etcylsilcy nfgvetyeqk
      121 kyeqssfwls qsydigkmdm kytvgkemqa kvlrllatay fewdcslyld kalkainlan
      181 qenlhpagff lkvkillksg asdedinsav seflhhemsl dfclniakll lehgresvgf
      241 dflksvperf qsspdlgkit llhiefllqn krellakqki eeiiighytg kqllpealnk
      301 lhiilwdraa khyeaksyse alhwynysas fytpgqidqn laklqrnmas cylhlkqvdk
      361 akeavkeaer cdpssiftkf svykiavmek dtdkaveavi emgklaekss qcedklrlde
      421 ntgtnllsla aqialeneqq vvaikaleyl sahlqdcrql faalkclvrl mlskimsese
      481 ekrdedigsm ltylalahkr laesfteekf tgdarileah wfrkvawnla vqfnscpekm
      541 rdffllsfkl sqfcpsdkav liaqrtcllm aaavdlemgr qqvkpseqae lltqalqhlq
      601 tckevwkvlk ftgdfakdpt dtllllyefe arsklndptl hnfmesvweq pqievktlei
      661 iaslamespa rypvlckkal ksalnihrkq pvidavkfsk clhslinlsl ptgvtdldac
      721 vlqevwgyfe dglsvvsstd aypetevlwl mtrawntgif qytvgkykea eqwcglgmrf
      781 lnqlgslkks yeghppaqsl spsltqiscc sllcysgplv llhrqryqsl lcltepgrla
      841 ggwprretlp khlvpf
//
LOCUS       XP_053931644             854 aa            linear   VRT 09-MAR-2023
DEFINITION  testis-expressed protein 11 isoform X7 [Cuculus canorus].
ACCESSION   XP_053931644
VERSION     XP_053931644.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075669.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..854
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..854
                     /product="testis-expressed protein 11 isoform X7"
                     /calculated_mol_wt=95967
     Region          188..442
                     /region_name="SPO22"
                     /note="Meiosis protein SPO22/ZIP4 like; pfam08631"
                     /db_xref="CDD:462542"
     Region          418..450
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(420..421,424..425,427,457,460..461,464..465,
                     467..468,491,494..495,498..499,502)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          <450..>578
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          455..485
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..854
                     /gene="TEX11"
                     /coded_by="XM_054075669.1:136..2700"
                     /db_xref="GeneID:104069033"
ORIGIN      
        1 maealegpar rslpgersgd aappaclial vqellkeevp srvaaliekl feaagslaga
       61 rggaaeieec aislwnwtvt khtasvinde qraklrfvac rlvclcegsd pseatirrqi
      121 lmsmktgkgw idigkadlad gfleiamssi eklyaklleg sngeadihah kadveksvfk
      181 vlsyqaesav aqgdfqramt cvqrckdmlm klpketcyls ilcynfgvet yeqkkyeqss
      241 fwlsqsydig kmdmkytvgk emqakvlrll atayfewdcs lyldkalkai nlanqenlhp
      301 agfflkvkil lksgasdedi nsavseflhh emsldfclni aklllehgre svgfdflksv
      361 perfqsspdl gkitllhief llqnkrella kqkieeiiig hytgkqllpe alnklhiilw
      421 draakhyeak sysealhwyn ysasfytpgq idqnlaklqr nmascylhlk qvdkakeavk
      481 eaercdpssi ftkfsvykia vmekdtdkav eaviemgkla ekssqcedkl rldentgtnl
      541 lslaaqiale neqqvvaika leylsahlqd crqlfaalkc lvrlmlskim seseekrded
      601 igsmltylal ahkrlaesft eekftgdari leahwfrkva wnlavqfnsc pekmrdffll
      661 sfklsqfcps dkavliaqrt cllmaaavdl emgrqqvkps eqaelltqal qhlqtckevw
      721 kvlkftgdfa kdptdtllll yefearskln dptlhnfmes vweqpqievk tleiiaslam
      781 esparypvlc kkalksalni hrkqpvidav kfskclhsli nlslptgvtd ldacvlqevw
      841 gyfedglsvv sstv
//
LOCUS       XP_053931645             849 aa            linear   VRT 09-MAR-2023
DEFINITION  testis-expressed protein 11 isoform X8 [Cuculus canorus].
ACCESSION   XP_053931645
VERSION     XP_053931645.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075670.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..849
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..849
                     /product="testis-expressed protein 11 isoform X8"
                     /calculated_mol_wt=96243
     Region          67..321
                     /region_name="SPO22"
                     /note="Meiosis protein SPO22/ZIP4 like; pfam08631"
                     /db_xref="CDD:462542"
     Region          297..329
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(299..300,303..304,306,336,339..340,343..344,
                     346..347,370,373..374,377..378,381)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          <329..>457
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          334..364
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..849
                     /gene="TEX11"
                     /coded_by="XM_054075670.1:223..2772"
                     /db_xref="GeneID:104069033"
ORIGIN      
        1 msmktgkgwi digkadladg fleiamssie klyakllegs ngeadihahk adveksvfkv
       61 lsyqaesava qgdfqramtc vqrckdmlmk lpketcylsi lcynfgvety eqkkyeqssf
      121 wlsqsydigk mdmkytvgke mqakvlrlla tayfewdcsl yldkalkain lanqenlhpa
      181 gfflkvkill ksgasdedin savseflhhe msldfclnia klllehgres vgfdflksvp
      241 erfqsspdlg kitllhiefl lqnkrellak qkieeiiigh ytgkqllpea lnklhiilwd
      301 raakhyeaks ysealhwyny sasfytpgqi dqnlaklqrn mascylhlkq vdkakeavke
      361 aercdpssif tkfsvykiav mekdtdkave aviemgklae kssqcedklr ldentgtnll
      421 slaaqialen eqqvvaikal eylsahlqdc rqlfaalkcl vrlmlskims eseekrdedi
      481 gsmltylala hkrlaesfte ekftgdaril eahwfrkvaw nlavqfnscp ekmrdfflls
      541 fklsqfcpsd kavliaqrtc llmaaavdle mgrqqvkpse qaelltqalq hlqtckevwk
      601 vlkftgdfak dptdtlllly efearsklnd ptlhnfmesv weqpqievkt leiiaslame
      661 sparypvlck kalksalnih rkqpvidavk fskclhslin lslptgvtdl dacvlqevwg
      721 yfedglsvvs stdaypetev lwlmtrawnt gifqytvgky keaeqwcglg mrflnqlgsl
      781 kksyeghppa qslspsltqi sccsllcysg plvllhrqry qsllcltepg rlaggwprre
      841 tlpkhlvpf
//
LOCUS       XP_053931646             805 aa            linear   VRT 09-MAR-2023
DEFINITION  testis-expressed protein 11 isoform X9 [Cuculus canorus].
ACCESSION   XP_053931646
VERSION     XP_053931646.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075671.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..805
                     /product="testis-expressed protein 11 isoform X9"
                     /calculated_mol_wt=90305
     Region          188..>351
                     /region_name="SPO22"
                     /note="Meiosis protein SPO22/ZIP4 like; pfam08631"
                     /db_xref="CDD:462542"
     Region          290..320
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..805
                     /gene="TEX11"
                     /coded_by="XM_054075671.1:136..2553"
                     /db_xref="GeneID:104069033"
ORIGIN      
        1 maealegpar rslpgersgd aappaclial vqellkeevp srvaaliekl feaagslaga
       61 rggaaeieec aislwnwtvt khtasvinde qraklrfvac rlvclcegsd pseatirrqi
      121 lmsmktgkgw idigkadlad gfleiamssi eklyaklleg sngeadihah kadveksvfk
      181 vlsyqaesav aqgdfqramt cvqrckdmlm klpketcyls ilcynfgvet yeqkkyeqss
      241 fwlsqsydig kmdmkytvgk emqaksysea lhwynysasf ytpgqidqnl aklqrnmasc
      301 ylhlkqvdka keavkeaerc dpssiftkfs vykiavmekd tdkaveavie mgklaekssq
      361 cedklrlden tgtnllslaa qialeneqqv vaikaleyls ahlqdcrqlf aalkclvrlm
      421 lskimsesee krdedigsml tylalahkrl aesfteekft gdarileahw frkvawnlav
      481 qfnscpekmr dffllsfkls qfcpsdkavl iaqrtcllma aavdlemgrq qvkpseqael
      541 ltqalqhlqt ckevwkvlkf tgdfakdptd tllllyefea rsklndptlh nfmesvweqp
      601 qievktleii aslamespar ypvlckkalk salnihrkqp vidavkfskc lhslinlslp
      661 tgvtdldacv lqevwgyfed glsvvsstda ypetevlwlm trawntgifq ytvgkykeae
      721 qwcglgmrfl nqlgslkksy eghppaqsls psltqisccs llcysgplvl lhrqryqsll
      781 cltepgrlag gwprretlpk hlvpf
//
LOCUS       XP_053931647             899 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 3 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931647
VERSION     XP_053931647.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075672.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..899
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..899
                     /product="disks large homolog 3 isoform X1"
                     /calculated_mol_wt=99482
     Region          6..63
                     /region_name="L27_1"
                     /note="pfam09058"
                     /db_xref="CDD:462665"
     Region          105..180
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          179..258
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(190..196,213,216,246,250,253..254)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          276..360
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(285..291,308,311,341,345,348..349)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          361..435
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          433..523
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(445..451,462,465,495,499,502..503)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          552..618
                     /region_name="SH3_DLG3"
                     /note="Src Homology 3 domain of Disks Large homolog 3;
                     cd12029"
                     /db_xref="CDD:212962"
     Site            order(557,579..580)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212962"
     Site            order(560,562,565,574,592..593,612,614..615)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212962"
     Region          708..886
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..899
                     /gene="DLG3"
                     /coded_by="XM_054075672.1:136..2835"
                     /db_xref="GeneID:104069032"
ORIGIN      
        1 mirrkdtera veiltryqst lrspeeqelk asigkvshvf qselfqalld ihefydftlr
       61 saplqppsad tchstarrhh gtseqsstat tgepqnlpkd psrdseqrlp tgagdsalgt
      121 pprlvrvtar rteapasvcs lvlgsrsalp qanpapiivn tdsleqglsv ngsdgmfkye
      181 eivlergnsg lgfsiaggid nphipddpgi fitkiipgga aamdgrlgvn dcvlrvndvd
      241 vsevvhskav ealkeagpvv rlvvrrrqpp petimevnlm kgpkglgfsi aggignqhip
      301 gdnsiyitki ieggaaqkdg rlqigdrlla vnntnlqdvr heeavaalkn tsdmvylkva
      361 kpgnihlndm yappdyastf saladnhish nsslgylgsv enkpaypvpp qvtpsryspi
      421 prhmigdedf treprkiilh kgstglgfni vggedgegif vsfilaggpa dlsgelrrgd
      481 rilsvngvnl rnatheqaaa alkragqtvt iiaqyrpeey srfeskihdl reqmmnssms
      541 sgsgslrtse krslyvralf dydrtrdscl psqglsfsyg dilhvinasd dewwqarlvt
      601 phgeseqigv ipskkrvekk erarlktvkf hartgmiesn rsiktkrkks frlsrkfpfy
      661 kskenlaqes sgqeqgvtsn tsdsessskg qediilsyep vtrheihyar pviilgptkd
      721 rinddlisef phkfgscvph ttrprrenev dgqdyhfvvs reqmekdiqd nkfieagqfn
      781 dnlygtsiqs vravaergkh cildvsgnai krlqqaqlyp iaifikpksi ealmemnrrq
      841 tyeqankvfd kamkleqefg eyftaivqgd sleeiyskik qiiedqsghy iwvpspekl
//
LOCUS       XP_053931648             885 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 3 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931648
VERSION     XP_053931648.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075673.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..885
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..885
                     /product="disks large homolog 3 isoform X2"
                     /calculated_mol_wt=98114
     Region          6..63
                     /region_name="L27_1"
                     /note="pfam09058"
                     /db_xref="CDD:462665"
     Region          105..180
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          179..258
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(190..196,213,216,246,250,253..254)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          276..360
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(285..291,308,311,341,345,348..349)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          361..435
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          433..523
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(445..451,462,465,495,499,502..503)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          552..618
                     /region_name="SH3_DLG3"
                     /note="Src Homology 3 domain of Disks Large homolog 3;
                     cd12029"
                     /db_xref="CDD:212962"
     Site            order(557,579..580)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212962"
     Site            order(560,562,565,574,592..593,612,614..615)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212962"
     Region          694..872
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..885
                     /gene="DLG3"
                     /coded_by="XM_054075673.1:136..2793"
                     /db_xref="GeneID:104069032"
ORIGIN      
        1 mirrkdtera veiltryqst lrspeeqelk asigkvshvf qselfqalld ihefydftlr
       61 saplqppsad tchstarrhh gtseqsstat tgepqnlpkd psrdseqrlp tgagdsalgt
      121 pprlvrvtar rteapasvcs lvlgsrsalp qanpapiivn tdsleqglsv ngsdgmfkye
      181 eivlergnsg lgfsiaggid nphipddpgi fitkiipgga aamdgrlgvn dcvlrvndvd
      241 vsevvhskav ealkeagpvv rlvvrrrqpp petimevnlm kgpkglgfsi aggignqhip
      301 gdnsiyitki ieggaaqkdg rlqigdrlla vnntnlqdvr heeavaalkn tsdmvylkva
      361 kpgnihlndm yappdyastf saladnhish nsslgylgsv enkpaypvpp qvtpsryspi
      421 prhmigdedf treprkiilh kgstglgfni vggedgegif vsfilaggpa dlsgelrrgd
      481 rilsvngvnl rnatheqaaa alkragqtvt iiaqyrpeey srfeskihdl reqmmnssms
      541 sgsgslrtse krslyvralf dydrtrdscl psqglsfsyg dilhvinasd dewwqarlvt
      601 phgeseqigv ipskkrvekk erarlktvkf hartgmiesn rsiktkrkks frlsrkfpfy
      661 kskenlaqes sgqeqgqedi ilsyepvtrh eihyarpvii lgptkdrind dlisefphkf
      721 gscvphttrp rrenevdgqd yhfvvsreqm ekdiqdnkfi eagqfndnly gtsiqsvrav
      781 aergkhcild vsgnaikrlq qaqlypiaif ikpksiealm emnrrqtyeq ankvfdkamk
      841 leqefgeyft aivqgdslee iyskikqiie dqsghyiwvp spekl
//
LOCUS       XP_053931649             881 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 3 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931649
VERSION     XP_053931649.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075674.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..881
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..881
                     /product="disks large homolog 3 isoform X3"
                     /calculated_mol_wt=97222
     Region          6..63
                     /region_name="L27_1"
                     /note="pfam09058"
                     /db_xref="CDD:462665"
     Region          105..180
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          179..258
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(190..196,213,216,246,250,253..254)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          276..360
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(285..291,308,311,341,345,348..349)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          361..435
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          433..523
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(445..451,462,465,495,499,502..503)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          552..618
                     /region_name="SH3_DLG3"
                     /note="Src Homology 3 domain of Disks Large homolog 3;
                     cd12029"
                     /db_xref="CDD:212962"
     Site            order(557,579..580)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212962"
     Site            order(560,562,565,574,592..593,612,614..615)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212962"
     Region          690..868
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..881
                     /gene="DLG3"
                     /coded_by="XM_054075674.1:136..2781"
                     /db_xref="GeneID:104069032"
ORIGIN      
        1 mirrkdtera veiltryqst lrspeeqelk asigkvshvf qselfqalld ihefydftlr
       61 saplqppsad tchstarrhh gtseqsstat tgepqnlpkd psrdseqrlp tgagdsalgt
      121 pprlvrvtar rteapasvcs lvlgsrsalp qanpapiivn tdsleqglsv ngsdgmfkye
      181 eivlergnsg lgfsiaggid nphipddpgi fitkiipgga aamdgrlgvn dcvlrvndvd
      241 vsevvhskav ealkeagpvv rlvvrrrqpp petimevnlm kgpkglgfsi aggignqhip
      301 gdnsiyitki ieggaaqkdg rlqigdrlla vnntnlqdvr heeavaalkn tsdmvylkva
      361 kpgnihlndm yappdyastf saladnhish nsslgylgsv enkpaypvpp qvtpsryspi
      421 prhmigdedf treprkiilh kgstglgfni vggedgegif vsfilaggpa dlsgelrrgd
      481 rilsvngvnl rnatheqaaa alkragqtvt iiaqyrpeey srfeskihdl reqmmnssms
      541 sgsgslrtse krslyvralf dydrtrdscl psqglsfsyg dilhvinasd dewwqarlvt
      601 phgeseqigv ipskkrvekk erarlktvkf hartgmiesn rdfpglsddy ygaknlkgvt
      661 sntsdsesss kgqediilsy epvtrheihy arpviilgpt kdrinddlis efphkfgscv
      721 phttrprren evdgqdyhfv vsreqmekdi qdnkfieagq fndnlygtsi qsvravaerg
      781 khcildvsgn aikrlqqaql ypiaifikpk siealmemnr rqtyeqankv fdkamkleqe
      841 fgeyftaivq gdsleeiysk ikqiiedqsg hyiwvpspek l
//
LOCUS       XP_053931651             881 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 3 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931651
VERSION     XP_053931651.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075676.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..881
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..881
                     /product="disks large homolog 3 isoform X4"
                     /calculated_mol_wt=97661
     Region          6..63
                     /region_name="L27_1"
                     /note="pfam09058"
                     /db_xref="CDD:462665"
     Region          161..240
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(172..178,195,198,228,232,235..236)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          258..342
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(267..273,290,293,323,327,330..331)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          343..417
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          415..505
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(427..433,444,447,477,481,484..485)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          534..600
                     /region_name="SH3_DLG3"
                     /note="Src Homology 3 domain of Disks Large homolog 3;
                     cd12029"
                     /db_xref="CDD:212962"
     Site            order(539,561..562)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212962"
     Site            order(542,544,547,556,574..575,594,596..597)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212962"
     Region          690..868
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..881
                     /gene="DLG3"
                     /coded_by="XM_054075676.1:136..2781"
                     /db_xref="GeneID:104069032"
ORIGIN      
        1 mirrkdtera veiltryqst lrspeeqelk asigkvshvf qselfqalld ihefydftlr
       61 saplqppsad tchstarrhh gtseqsstat tgepqnlpkd psrdseqrlp tgagdsalgt
      121 pprlvrvtar rteapasvcs lvlgsrsalp qvngsdgmfk yeeivlergn sglgfsiagg
      181 idnphipddp gifitkiipg gaaamdgrlg vndcvlrvnd vdvsevvhsk avealkeagp
      241 vvrlvvrrrq pppetimevn lmkgpkglgf siaggignqh ipgdnsiyit kiieggaaqk
      301 dgrlqigdrl lavnntnlqd vrheeavaal kntsdmvylk vakpgnihln dmyappdyas
      361 tfsaladnhi shnsslgylg svenkpaypv ppqvtpsrys piprhmigde dftreprkii
      421 lhkgstglgf nivggedgeg ifvsfilagg padlsgelrr gdrilsvngv nlrnatheqa
      481 aaalkragqt vtiiaqyrpe eysrfeskih dlreqmmnss mssgsgslrt sekrslyvra
      541 lfdydrtrds clpsqglsfs ygdilhvina sddewwqarl vtphgeseqi gvipskkrve
      601 kkerarlktv kfhartgmie snrsiktkrk ksfrlsrkfp fykskenlaq essgqeqgvt
      661 sntsdsesss kgqediilsy epvtrheihy arpviilgpt kdrinddlis efphkfgscv
      721 phttrprren evdgqdyhfv vsreqmekdi qdnkfieagq fndnlygtsi qsvravaerg
      781 khcildvsgn aikrlqqaql ypiaifikpk siealmemnr rqtyeqankv fdkamkleqe
      841 fgeyftaivq gdsleeiysk ikqiiedqsg hyiwvpspek l
//
LOCUS       XP_053931652             867 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 3 isoform X5 [Cuculus canorus].
ACCESSION   XP_053931652
VERSION     XP_053931652.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075677.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..867
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..867
                     /product="disks large homolog 3 isoform X5"
                     /calculated_mol_wt=95854
     Region          6..63
                     /region_name="L27_1"
                     /note="pfam09058"
                     /db_xref="CDD:462665"
     Region          105..180
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          179..258
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(190..196,213,216,246,250,253..254)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          276..360
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(285..291,308,311,341,345,348..349)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          361..435
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          433..523
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(445..451,462,465,495,499,502..503)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          552..618
                     /region_name="SH3_DLG3"
                     /note="Src Homology 3 domain of Disks Large homolog 3;
                     cd12029"
                     /db_xref="CDD:212962"
     Site            order(557,579..580)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212962"
     Site            order(560,562,565,574,592..593,612,614..615)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212962"
     Region          676..854
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..867
                     /gene="DLG3"
                     /coded_by="XM_054075677.1:136..2739"
                     /db_xref="GeneID:104069032"
ORIGIN      
        1 mirrkdtera veiltryqst lrspeeqelk asigkvshvf qselfqalld ihefydftlr
       61 saplqppsad tchstarrhh gtseqsstat tgepqnlpkd psrdseqrlp tgagdsalgt
      121 pprlvrvtar rteapasvcs lvlgsrsalp qanpapiivn tdsleqglsv ngsdgmfkye
      181 eivlergnsg lgfsiaggid nphipddpgi fitkiipgga aamdgrlgvn dcvlrvndvd
      241 vsevvhskav ealkeagpvv rlvvrrrqpp petimevnlm kgpkglgfsi aggignqhip
      301 gdnsiyitki ieggaaqkdg rlqigdrlla vnntnlqdvr heeavaalkn tsdmvylkva
      361 kpgnihlndm yappdyastf saladnhish nsslgylgsv enkpaypvpp qvtpsryspi
      421 prhmigdedf treprkiilh kgstglgfni vggedgegif vsfilaggpa dlsgelrrgd
      481 rilsvngvnl rnatheqaaa alkragqtvt iiaqyrpeey srfeskihdl reqmmnssms
      541 sgsgslrtse krslyvralf dydrtrdscl psqglsfsyg dilhvinasd dewwqarlvt
      601 phgeseqigv ipskkrvekk erarlktvkf hartgmiesn rdfpglsddy ygaknlkgqe
      661 diilsyepvt rheihyarpv iilgptkdri nddlisefph kfgscvphtt rprrenevdg
      721 qdyhfvvsre qmekdiqdnk fieagqfndn lygtsiqsvr avaergkhci ldvsgnaikr
      781 lqqaqlypia ifikpksiea lmemnrrqty eqankvfdka mkleqefgey ftaivqgdsl
      841 eeiyskikqi iedqsghyiw vpspekl
//
LOCUS       XP_053931653             860 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 3 isoform X6 [Cuculus canorus].
ACCESSION   XP_053931653
VERSION     XP_053931653.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075678.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..860
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..860
                     /product="disks large homolog 3 isoform X6"
                     /calculated_mol_wt=95036
     Region          <110..141
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          140..219
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(151..157,174,177,207,211,214..215)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          237..321
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(246..252,269,272,302,306,309..310)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          322..396
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          394..484
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(406..412,423,426,456,460,463..464)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          513..579
                     /region_name="SH3_DLG3"
                     /note="Src Homology 3 domain of Disks Large homolog 3;
                     cd12029"
                     /db_xref="CDD:212962"
     Site            order(518,540..541)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212962"
     Site            order(521,523,526,535,553..554,573,575..576)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212962"
     Region          669..847
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..860
                     /gene="DLG3"
                     /coded_by="XM_054075678.1:48..2630"
                     /db_xref="GeneID:104069032"
ORIGIN      
        1 mhkhhhcckc pecyevtrma alrrmeppsy gewqheqygy ggygsqtlpa pggaapaarg
       61 kaklgapprd paamkptaat tttvaknapk vngsgpgwwp ectcssrdwy eqanpapiiv
      121 ntdsleqgls vngsdgmfky eeivlergns glgfsiaggi dnphipddpg ifitkiipgg
      181 aaamdgrlgv ndcvlrvndv dvsevvhska vealkeagpv vrlvvrrrqp ppetimevnl
      241 mkgpkglgfs iaggignqhi pgdnsiyitk iieggaaqkd grlqigdrll avnntnlqdv
      301 rheeavaalk ntsdmvylkv akpgnihlnd myappdyast fsaladnhis hnsslgylgs
      361 venkpaypvp pqvtpsrysp iprhmigded ftreprkiil hkgstglgfn ivggedgegi
      421 fvsfilaggp adlsgelrrg drilsvngvn lrnatheqaa aalkragqtv tiiaqyrpee
      481 ysrfeskihd lreqmmnssm ssgsgslrts ekrslyvral fdydrtrdsc lpsqglsfsy
      541 gdilhvinas ddewwqarlv tphgeseqig vipskkrvek kerarlktvk fhartgmies
      601 nrsiktkrkk sfrlsrkfpf ykskenlaqe ssgqeqgvts ntsdsesssk gqediilsye
      661 pvtrheihya rpviilgptk drinddlise fphkfgscvp httrprrene vdgqdyhfvv
      721 sreqmekdiq dnkfieagqf ndnlygtsiq svravaergk hcildvsgna ikrlqqaqly
      781 piaifikpks iealmemnrr qtyeqankvf dkamkleqef geyftaivqg dsleeiyski
      841 kqiiedqsgh yiwvpspekl
//
LOCUS       XP_053931654             842 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 3 isoform X7 [Cuculus canorus].
ACCESSION   XP_053931654
VERSION     XP_053931654.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075679.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..842
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..842
                     /product="disks large homolog 3 isoform X7"
                     /calculated_mol_wt=92776
     Region          <110..141
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          140..219
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(151..157,174,177,207,211,214..215)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          237..321
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(246..252,269,272,302,306,309..310)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          322..396
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          394..484
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(406..412,423,426,456,460,463..464)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          513..579
                     /region_name="SH3_DLG3"
                     /note="Src Homology 3 domain of Disks Large homolog 3;
                     cd12029"
                     /db_xref="CDD:212962"
     Site            order(518,540..541)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212962"
     Site            order(521,523,526,535,553..554,573,575..576)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212962"
     Region          651..829
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..842
                     /gene="DLG3"
                     /coded_by="XM_054075679.1:49..2577"
                     /db_xref="GeneID:104069032"
ORIGIN      
        1 mhkhhhcckc pecyevtrma alrrmeppsy gewqheqygy ggygsqtlpa pggaapaarg
       61 kaklgapprd paamkptaat tttvaknapk vngsgpgwwp ectcssrdwy eqanpapiiv
      121 ntdsleqgls vngsdgmfky eeivlergns glgfsiaggi dnphipddpg ifitkiipgg
      181 aaamdgrlgv ndcvlrvndv dvsevvhska vealkeagpv vrlvvrrrqp ppetimevnl
      241 mkgpkglgfs iaggignqhi pgdnsiyitk iieggaaqkd grlqigdrll avnntnlqdv
      301 rheeavaalk ntsdmvylkv akpgnihlnd myappdyast fsaladnhis hnsslgylgs
      361 venkpaypvp pqvtpsrysp iprhmigded ftreprkiil hkgstglgfn ivggedgegi
      421 fvsfilaggp adlsgelrrg drilsvngvn lrnatheqaa aalkragqtv tiiaqyrpee
      481 ysrfeskihd lreqmmnssm ssgsgslrts ekrslyvral fdydrtrdsc lpsqglsfsy
      541 gdilhvinas ddewwqarlv tphgeseqig vipskkrvek kerarlktvk fhartgmies
      601 nrdfpglsdd yygaknlkgv tsntsdsess skgqediils yepvtrheih yarpviilgp
      661 tkdrinddli sefphkfgsc vphttrprre nevdgqdyhf vvsreqmekd iqdnkfieag
      721 qfndnlygts iqsvravaer gkhcildvsg naikrlqqaq lypiaifikp ksiealmemn
      781 rrqtyeqank vfdkamkleq efgeyftaiv qgdsleeiys kikqiiedqs ghyiwvpspe
      841 kl
//
LOCUS       XP_053931655             842 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 3 isoform X8 [Cuculus canorus].
ACCESSION   XP_053931655
VERSION     XP_053931655.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075680.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..842
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..842
                     /product="disks large homolog 3 isoform X8"
                     /calculated_mol_wt=93215
     Region          122..201
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(133..139,156,159,189,193,196..197)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          219..303
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(228..234,251,254,284,288,291..292)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          304..378
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          376..466
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(388..394,405,408,438,442,445..446)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          495..561
                     /region_name="SH3_DLG3"
                     /note="Src Homology 3 domain of Disks Large homolog 3;
                     cd12029"
                     /db_xref="CDD:212962"
     Site            order(500,522..523)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212962"
     Site            order(503,505,508,517,535..536,555,557..558)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212962"
     Region          651..829
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..842
                     /gene="DLG3"
                     /coded_by="XM_054075680.1:48..2576"
                     /db_xref="GeneID:104069032"
ORIGIN      
        1 mhkhhhcckc pecyevtrma alrrmeppsy gewqheqygy ggygsqtlpa pggaapaarg
       61 kaklgapprd paamkptaat tttvaknapk vngsgpgwwp ectcssrdwy eqvngsdgmf
      121 kyeeivlerg nsglgfsiag gidnphipdd pgifitkiip ggaaamdgrl gvndcvlrvn
      181 dvdvsevvhs kavealkeag pvvrlvvrrr qpppetimev nlmkgpkglg fsiaggignq
      241 hipgdnsiyi tkiieggaaq kdgrlqigdr llavnntnlq dvrheeavaa lkntsdmvyl
      301 kvakpgnihl ndmyappdya stfsaladnh ishnsslgyl gsvenkpayp vppqvtpsry
      361 spiprhmigd edftreprki ilhkgstglg fnivggedge gifvsfilag gpadlsgelr
      421 rgdrilsvng vnlrnatheq aaaalkragq tvtiiaqyrp eeysrfeski hdlreqmmns
      481 smssgsgslr tsekrslyvr alfdydrtrd sclpsqglsf sygdilhvin asddewwqar
      541 lvtphgeseq igvipskkrv ekkerarlkt vkfhartgmi esnrsiktkr kksfrlsrkf
      601 pfykskenla qessgqeqgv tsntsdsess skgqediils yepvtrheih yarpviilgp
      661 tkdrinddli sefphkfgsc vphttrprre nevdgqdyhf vvsreqmekd iqdnkfieag
      721 qfndnlygts iqsvravaer gkhcildvsg naikrlqqaq lypiaifikp ksiealmemn
      781 rrqtyeqank vfdkamkleq efgeyftaiv qgdsleeiys kikqiiedqs ghyiwvpspe
      841 kl
//
LOCUS       XP_053931656             828 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 3 isoform X9 [Cuculus canorus].
ACCESSION   XP_053931656
VERSION     XP_053931656.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075681.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..828
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..828
                     /product="disks large homolog 3 isoform X9"
                     /calculated_mol_wt=91409
     Region          <110..141
                     /region_name="MAGUK_N_PEST"
                     /note="Polyubiquitination (PEST) N-terminal domain of
                     MAGUK; pfam10608"
                     /db_xref="CDD:431391"
     Region          140..219
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(151..157,174,177,207,211,214..215)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          237..321
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(246..252,269,272,302,306,309..310)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          322..396
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          394..484
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(406..412,423,426,456,460,463..464)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          513..579
                     /region_name="SH3_DLG3"
                     /note="Src Homology 3 domain of Disks Large homolog 3;
                     cd12029"
                     /db_xref="CDD:212962"
     Site            order(518,540..541)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212962"
     Site            order(521,523,526,535,553..554,573,575..576)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212962"
     Region          637..815
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..828
                     /gene="DLG3"
                     /coded_by="XM_054075681.1:49..2535"
                     /db_xref="GeneID:104069032"
ORIGIN      
        1 mhkhhhcckc pecyevtrma alrrmeppsy gewqheqygy ggygsqtlpa pggaapaarg
       61 kaklgapprd paamkptaat tttvaknapk vngsgpgwwp ectcssrdwy eqanpapiiv
      121 ntdsleqgls vngsdgmfky eeivlergns glgfsiaggi dnphipddpg ifitkiipgg
      181 aaamdgrlgv ndcvlrvndv dvsevvhska vealkeagpv vrlvvrrrqp ppetimevnl
      241 mkgpkglgfs iaggignqhi pgdnsiyitk iieggaaqkd grlqigdrll avnntnlqdv
      301 rheeavaalk ntsdmvylkv akpgnihlnd myappdyast fsaladnhis hnsslgylgs
      361 venkpaypvp pqvtpsrysp iprhmigded ftreprkiil hkgstglgfn ivggedgegi
      421 fvsfilaggp adlsgelrrg drilsvngvn lrnatheqaa aalkragqtv tiiaqyrpee
      481 ysrfeskihd lreqmmnssm ssgsgslrts ekrslyvral fdydrtrdsc lpsqglsfsy
      541 gdilhvinas ddewwqarlv tphgeseqig vipskkrvek kerarlktvk fhartgmies
      601 nrdfpglsdd yygaknlkgq ediilsyepv trheihyarp viilgptkdr inddlisefp
      661 hkfgscvpht trprrenevd gqdyhfvvsr eqmekdiqdn kfieagqfnd nlygtsiqsv
      721 ravaergkhc ildvsgnaik rlqqaqlypi aifikpksie almemnrrqt yeqankvfdk
      781 amkleqefge yftaivqgds leeiyskikq iiedqsghyi wvpspekl
//
LOCUS       XP_053931657             810 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 3 isoform X10 [Cuculus canorus].
ACCESSION   XP_053931657
VERSION     XP_053931657.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075682.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..810
                     /product="disks large homolog 3 isoform X10"
                     /calculated_mol_wt=89588
     Region          122..201
                     /region_name="PDZ1_Dlg1-2-4-like"
                     /note="PDZ domain 1 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06723"
                     /db_xref="CDD:467206"
     Site            order(133..139,156,159,189,193,196..197)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467206"
     Region          219..303
                     /region_name="PDZ2_Dlg1-2-4-like"
                     /note="PDZ domain 2 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06724"
                     /db_xref="CDD:467207"
     Site            order(228..234,251,254,284,288,291..292)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467207"
     Region          304..378
                     /region_name="PDZ_assoc"
                     /note="PDZ-associated domain of NMDA receptors; pfam10600"
                     /db_xref="CDD:463164"
     Region          376..466
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(388..394,405,408,438,442,445..446)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          495..561
                     /region_name="SH3_DLG3"
                     /note="Src Homology 3 domain of Disks Large homolog 3;
                     cd12029"
                     /db_xref="CDD:212962"
     Site            order(500,522..523)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212962"
     Site            order(503,505,508,517,535..536,555,557..558)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212962"
     Region          619..797
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..810
                     /gene="DLG3"
                     /coded_by="XM_054075682.1:49..2481"
                     /db_xref="GeneID:104069032"
ORIGIN      
        1 mhkhhhcckc pecyevtrma alrrmeppsy gewqheqygy ggygsqtlpa pggaapaarg
       61 kaklgapprd paamkptaat tttvaknapk vngsgpgwwp ectcssrdwy eqvngsdgmf
      121 kyeeivlerg nsglgfsiag gidnphipdd pgifitkiip ggaaamdgrl gvndcvlrvn
      181 dvdvsevvhs kavealkeag pvvrlvvrrr qpppetimev nlmkgpkglg fsiaggignq
      241 hipgdnsiyi tkiieggaaq kdgrlqigdr llavnntnlq dvrheeavaa lkntsdmvyl
      301 kvakpgnihl ndmyappdya stfsaladnh ishnsslgyl gsvenkpayp vppqvtpsry
      361 spiprhmigd edftreprki ilhkgstglg fnivggedge gifvsfilag gpadlsgelr
      421 rgdrilsvng vnlrnatheq aaaalkragq tvtiiaqyrp eeysrfeski hdlreqmmns
      481 smssgsgslr tsekrslyvr alfdydrtrd sclpsqglsf sygdilhvin asddewwqar
      541 lvtphgeseq igvipskkrv ekkerarlkt vkfhartgmi esnrdfpgls ddyygaknlk
      601 gqediilsye pvtrheihya rpviilgptk drinddlise fphkfgscvp httrprrene
      661 vdgqdyhfvv sreqmekdiq dnkfieagqf ndnlygtsiq svravaergk hcildvsgna
      721 ikrlqqaqly piaifikpks iealmemnrr qtyeqankvf dkamkleqef geyftaivqg
      781 dsleeiyski kqiiedqsgh yiwvpspekl
//
LOCUS       XP_053931658             501 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 3 isoform X11 [Cuculus canorus].
ACCESSION   XP_053931658
VERSION     XP_053931658.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075683.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..501
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..501
                     /product="disks large homolog 3 isoform X11"
                     /calculated_mol_wt=56729
     Region          35..125
                     /region_name="PDZ3_Dlg1-2-4-like"
                     /note="PDZ domain 3 of human discs large homolog 1 (Dlg1),
                     Dlg2, and Dlg4, Drosophila disc large (Dlg), and related
                     domains; cd06795"
                     /db_xref="CDD:467257"
     Site            order(47..53,64,67,97,101,104..105)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:467257"
     Region          154..220
                     /region_name="SH3_DLG3"
                     /note="Src Homology 3 domain of Disks Large homolog 3;
                     cd12029"
                     /db_xref="CDD:212962"
     Site            order(159,181..182)
                     /site_type="other"
                     /note="GuK domain interface [polypeptide binding]"
                     /db_xref="CDD:212962"
     Site            order(162,164,167,176,194..195,214,216..217)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212962"
     Region          310..488
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..501
                     /gene="DLG3"
                     /coded_by="XM_054075683.1:55..1560"
                     /db_xref="GeneID:104069032"
ORIGIN      
        1 mftvnvsssm syrgqpsmsp srqqqgqrsk cdqreprkii lhkgstglgf nivggedgeg
       61 ifvsfilagg padlsgelrr gdrilsvngv nlrnatheqa aaalkragqt vtiiaqyrpe
      121 eysrfeskih dlreqmmnss mssgsgslrt sekrslyvra lfdydrtrds clpsqglsfs
      181 ygdilhvina sddewwqarl vtphgeseqi gvipskkrve kkerarlktv kfhartgmie
      241 snrsiktkrk ksfrlsrkfp fykskenlaq essgqeqgvt sntsdsesss kgqediilsy
      301 epvtrheihy arpviilgpt kdrinddlis efphkfgscv phttrprren evdgqdyhfv
      361 vsreqmekdi qdnkfieagq fndnlygtsi qsvravaerg khcildvsgn aikrlqqaql
      421 ypiaifikpk siealmemnr rqtyeqankv fdkamkleqe fgeyftaivq gdsleeiysk
      481 ikqiiedqsg hyiwvpspek l
//
LOCUS       XP_053931659             366 aa            linear   VRT 09-MAR-2023
DEFINITION  disks large homolog 3 isoform X12 [Cuculus canorus].
ACCESSION   XP_053931659
VERSION     XP_053931659.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075684.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..366
                     /product="disks large homolog 3 isoform X12"
                     /calculated_mol_wt=41898
     Region          19..85
                     /region_name="SH3"
                     /note="Src Homology 3 domain superfamily; cl17036"
                     /db_xref="CDD:473055"
     Site            order(27,29,32,41,59..60,79,81..82)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212962"
     Region          175..353
                     /region_name="Guanylate_kin"
                     /note="Guanylate kinase; pfam00625"
                     /db_xref="CDD:395500"
     CDS             1..366
                     /gene="DLG3"
                     /coded_by="XM_054075684.1:174..1274"
                     /db_xref="GeneID:104069032"
ORIGIN      
        1 mmnssmssgs gslrtsekrs lyvralfdyd rtrdsclpsq glsfsygdil hvinasddew
       61 wqarlvtphg eseqigvips kkrvekkera rlktvkfhar tgmiesnrsi ktkrkksfrl
      121 srkfpfyksk enlaqessgq eqgvtsntsd sessskgqed iilsyepvtr heihyarpvi
      181 ilgptkdrin ddlisefphk fgscvphttr prrenevdgq dyhfvvsreq mekdiqdnkf
      241 ieagqfndnl ygtsiqsvra vaergkhcil dvsgnaikrl qqaqlypiai fikpksieal
      301 memnrrqtye qankvfdkam kleqefgeyf taivqgdsle eiyskikqii edqsghyiwv
      361 pspekl
//
LOCUS       XP_053931661             168 aa            linear   VRT 09-MAR-2023
DEFINITION  nuclear cap-binding protein subunit 2 [Cuculus canorus].
ACCESSION   XP_053931661
VERSION     XP_053931661.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075686.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..168
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..168
                     /product="nuclear cap-binding protein subunit 2"
                     /calculated_mol_wt=19176
     Region          45..122
                     /region_name="RRM_NCBP2"
                     /note="RNA recognition motif (RRM) found in nuclear
                     cap-binding protein subunit 2 (CBP20) and similar
                     proteins; cd12240"
                     /db_xref="CDD:409686"
     Site            order(46,86,88,115,117..119)
                     /site_type="other"
                     /note="chemical substrate binding site [chemical binding]"
                     /db_xref="CDD:409686"
     Site            order(53,56..58,60..62,65..66,68,70,72,92,99,102..103,
                     105..108,110..111)
                     /site_type="other"
                     /note="subunit interface [polypeptide binding]"
                     /db_xref="CDD:409686"
     CDS             1..168
                     /gene="LOC104069034"
                     /coded_by="XM_054075686.1:73..579"
                     /db_xref="GeneID:104069034"
ORIGIN      
        1 msgllhttls glnsdsycei sqyrdqhfrg srqlqekslk isstlyvgnl sfytteeqiq
       61 elfskcgdvk rivmgldkik ktpcgfcfve yytradaeha mrfingtrld driirtdwda
      121 gfkegrqygr gktggqvrde yrtdydvgrg gfgkiiqmqk anhqpaiy
//
LOCUS       XP_053931662             288 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 164 [Cuculus canorus].
ACCESSION   XP_053931662
VERSION     XP_053931662.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075687.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..288
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..288
                     /product="transmembrane protein 164"
                     /calculated_mol_wt=32730
     Region          10..264
                     /region_name="TMEM164"
                     /note="TMEM164 family; pfam14808"
                     /db_xref="CDD:464327"
     CDS             1..288
                     /gene="TMEM164"
                     /coded_by="XM_054075687.1:297..1163"
                     /db_xref="GeneID:104058338"
ORIGIN      
        1 msryslqnll dwlyggvdps fagnggpeca aflsghqrfv esvvfltvgv veilvslwkl
       61 rqlhckeldl lqqpqakqes lgknlllvll clifglevgf kfatrtviyl lnpchvvtmm
      121 qifllacppc rtamilfrlq mhmlngalla llfpvvntrl lpfemeiyyi qhvmlyvvpi
      181 yllrkggiyt peplcnfwwa llstgfmfvy hfsilqilgl vtevnlnnml cpavsdpfyg
      241 pwyriwasgh qtvmtmthgk lvillfysav piykcsmdll rlpakkid
//
LOCUS       XP_009558134             288 aa            linear   VRT 09-MAR-2023
DEFINITION  transmembrane protein 164 [Cuculus canorus].
ACCESSION   XP_009558134
VERSION     XP_009558134.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009559839.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009558134.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..288
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..288
                     /product="transmembrane protein 164"
                     /calculated_mol_wt=32730
     Region          10..264
                     /region_name="TMEM164"
                     /note="TMEM164 family; pfam14808"
                     /db_xref="CDD:464327"
     CDS             1..288
                     /gene="TMEM164"
                     /coded_by="XM_009559839.2:173..1039"
                     /db_xref="GeneID:104058338"
ORIGIN      
        1 msryslqnll dwlyggvdps fagnggpeca aflsghqrfv esvvfltvgv veilvslwkl
       61 rqlhckeldl lqqpqakqes lgknlllvll clifglevgf kfatrtviyl lnpchvvtmm
      121 qifllacppc rtamilfrlq mhmlngalla llfpvvntrl lpfemeiyyi qhvmlyvvpi
      181 yllrkggiyt peplcnfwwa llstgfmfvy hfsilqilgl vtevnlnnml cpavsdpfyg
      241 pwyriwasgh qtvmtmthgk lvillfysav piykcsmdll rlpakkid
//
LOCUS       XP_053931663             216 aa            linear   VRT 09-MAR-2023
DEFINITION  motile sperm domain-containing protein 1 [Cuculus canorus].
ACCESSION   XP_053931663
VERSION     XP_053931663.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075688.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..216
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..216
                     /product="motile sperm domain-containing protein 1"
                     /calculated_mol_wt=24299
     Region          16..111
                     /region_name="Motile_Sperm"
                     /note="MSP (Major sperm protein) domain; pfam00635"
                     /db_xref="CDD:459882"
     CDS             1..216
                     /gene="MOSPD1"
                     /coded_by="XM_054075688.1:263..913"
                     /db_xref="GeneID:104060673"
ORIGIN      
        1 mqqqkrqpel vegnlpvfvf ptelifyadd qsthkqvltl ynpyefalkf kvlcttpnky
       61 avvdatgavk pqccvdivir hrdvrasyyg vidkfrlqvs eqsqrkalgk keiiatllps
      121 akeqqqqkee eekrikehla esvffeqtlc qpenrtassg pslltvflgi vciaalmlpt
      181 lgemdslvpl ylhlsvnqkl vaayvlglit mvilrt
//
LOCUS       XP_053931664             340 aa            linear   VRT 09-MAR-2023
DEFINITION  G-protein coupled receptor 12 [Cuculus canorus].
ACCESSION   XP_053931664
VERSION     XP_053931664.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075689.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..340
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..340
                     /product="G-protein coupled receptor 12"
                     /calculated_mol_wt=35871
     Region          49..318
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          51..75
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          84..105
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          120..142
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          165..181
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          201..224
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          256..278
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          286..311
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..340
                     /gene="LOC104058402"
                     /coded_by="XM_054075689.1:458..1480"
                     /db_xref="GeneID:104058402"
ORIGIN      
        1 mlhgpaamge pwqpqpqqqr lpalgnasep sagpgtaapg gggaaggvsp wdialcatgt
       61 avagenalvl avlfytpslr apmflligsl aladllaglg lvanfavryl lrppseaael
      121 gaaglllaaf sasvcsllai tvdrylslyn altyhsertl gftcamvllm wllclgvgll
      181 pllgwnclrd qsscsilrpv tkdnaavlav tflllfalmm qlylqickia frhaqqiavq
      241 hqfiataqat strkglstls lilgtfalcw ipfaiyslva dssypvvyty clalpatcns
      301 linpiiyafr npdiqkslwl accgcipstf ssrprtssdv
//
LOCUS       XP_053931666             338 aa            linear   VRT 09-MAR-2023
DEFINITION  probable G-protein coupled receptor 34 [Cuculus canorus].
ACCESSION   XP_053931666
VERSION     XP_053931666.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075691.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..338
                     /product="probable G-protein coupled receptor 34"
                     /calculated_mol_wt=38695
     Region          33..310
                     /region_name="7tm_GPCRs"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; cl28897"
                     /db_xref="CDD:475119"
     Region          35..59
                     /region_name="TM helix 1"
                     /note="TM helix 1 [structural motif]"
                     /db_xref="CDD:410628"
     Region          68..89
                     /region_name="TM helix 2"
                     /note="TM helix 2 [structural motif]"
                     /db_xref="CDD:410628"
     Region          102..124
                     /region_name="TM helix 3"
                     /note="TM helix 3 [structural motif]"
                     /db_xref="CDD:410628"
     Region          147..163
                     /region_name="TM helix 4"
                     /note="TM helix 4 [structural motif]"
                     /db_xref="CDD:410628"
     Region          187..210
                     /region_name="TM helix 5"
                     /note="TM helix 5 [structural motif]"
                     /db_xref="CDD:410628"
     Region          236..258
                     /region_name="TM helix 6"
                     /note="TM helix 6 [structural motif]"
                     /db_xref="CDD:410628"
     Region          278..303
                     /region_name="TM helix 7"
                     /note="TM helix 7 [structural motif]"
                     /db_xref="CDD:410628"
     CDS             1..338
                     /gene="LOC104069047"
                     /coded_by="XM_054075691.1:352..1368"
                     /db_xref="GeneID:104069047"
ORIGIN      
        1 mmdppstslp asqltdhrln nscrqiqdef lsvtlpvmys lifiigllsn tlalwvfsgs
       61 vqrrtsitvy mrnlalsdll lslclpfrit fqskseplif cniigsffyl nmyvsisfls
      121 lisldrylki iwplqkfrih tvscstmasa vvwlvhiafm lpfffetrgk epcdhkcfhf
      181 rsksttaaaf nmvavvtffi llllflyfys kifarlqrvs svkaqhlnkr tsmrtiaktf
      241 ivliifivcf tpyhvvripy ilaqveviss lpwkqglhla nelvlcisal nscldpviff
      301 flsssfrrav lctiqgrlrr alvrnqgrls hnrsvtei
//
LOCUS       XP_053931667             280 aa            linear   VRT 09-MAR-2023
DEFINITION  MICOS complex subunit MIC27 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931667
VERSION     XP_053931667.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075692.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..280
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..280
                     /product="MICOS complex subunit MIC27 isoform X1"
                     /calculated_mol_wt=30466
     Region          47..184
                     /region_name="ApoO"
                     /note="Apolipoprotein O; pfam09769"
                     /db_xref="CDD:462891"
     CDS             1..280
                     /gene="APOOL"
                     /coded_by="XM_054075692.1:124..966"
                     /db_xref="GeneID:128853160"
ORIGIN      
        1 mqglkakiiq vaklaavsaa vpfacitvha aaereskghl vkpsqlpiyc ppplksryie
       61 eqpghlqkqf ssvrqttgry igwckdaflf vkngildsiq fgkdayvylk npppeflpkv
      121 gvitisgfag vvlarkgsrf kkiayplgla tlgisvcypa qsvviakvtg kklisashqs
      181 yeavrslwak kedvsklqqd skslvkedkk kkeisgttpv saiesrsfnr tepspvesws
      241 stdavtssgt lkapkfrpdp klmdhgqssp edvdmystrs
//
LOCUS       XP_053931668             274 aa            linear   VRT 09-MAR-2023
DEFINITION  MICOS complex subunit MIC27 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931668
VERSION     XP_053931668.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075693.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..274
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..274
                     /product="MICOS complex subunit MIC27 isoform X2"
                     /calculated_mol_wt=29757
     Region          41..178
                     /region_name="ApoO"
                     /note="Apolipoprotein O; pfam09769"
                     /db_xref="CDD:462891"
     CDS             1..274
                     /gene="APOOL"
                     /coded_by="XM_054075693.1:86..910"
                     /db_xref="GeneID:128853160"
ORIGIN      
        1 maaevaklaa vsaavpfaci tvhaaaeres kghlvkpsql piycppplks ryieeqpghl
       61 qkqfssvrqt tgryigwckd aflfvkngil dsiqfgkday vylknpppef lpkvgvitis
      121 gfagvvlark gsrfkkiayp lglatlgisv cypaqsvvia kvtgkklisa shqsyeavrs
      181 lwakkedvsk lqqdskslvk edkkkkeisg ttpvsaiesr sfnrtepspv eswsstdavt
      241 ssgtlkapkf rpdpklmdhg qsspedvdmy strs
//
LOCUS       XP_053931669             233 aa            linear   VRT 09-MAR-2023
DEFINITION  uncharacterized protein LOC128853161 [Cuculus canorus].
ACCESSION   XP_053931669
VERSION     XP_053931669.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075694.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..233
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..233
                     /product="uncharacterized protein LOC128853161"
                     /calculated_mol_wt=26545
     CDS             1..233
                     /gene="LOC128853161"
                     /coded_by="XM_054075694.1:66..767"
                     /db_xref="GeneID:128853161"
ORIGIN      
        1 mgfrlsllkv llfilfmasg srseealepn ctrvedlgac lgntdnfcpa niscqckdek
       61 pfcrcdyfrv gwkeywymgp kcnhlwntls filvstlpav alviivilif yyvyrckskk
      121 agkrtkssys gaqhnpafaa eragslghly qpptmdawvg qipkavlrrq dfddvptpsq
      181 lenygpmhpq plrrpdpake hiynqqppye kfcypssnlp saghaeerrh wky
//
LOCUS       XP_053931671             416 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase 26 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931671
VERSION     XP_053931671.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075696.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..416
                     /product="serine/threonine-protein kinase 26 isoform X1"
                     /calculated_mol_wt=46673
     Region          19..295
                     /region_name="STKc_MST4"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Mammalian Ste20-like protein kinase 4; cd06640"
                     /db_xref="CDD:132971"
     Site            order(30..34,38,51,53,83,99..102,105..106,109,144,
                     146..149,151,161..162,165,179..182,184,211,220)
                     /site_type="active"
                     /db_xref="CDD:132971"
     Site            order(30..34,38,51,53,70,83,99..102,105..106,109,148..149,
                     151,162)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:132971"
     Site            order(33..34,144,146..148,165,179..182,184,211,220)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:132971"
     Site            161..184
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:132971"
     CDS             1..416
                     /gene="STK26"
                     /coded_by="XM_054075696.1:296..1546"
                     /db_xref="GeneID:104063677"
ORIGIN      
        1 mahspvavqv pgmqnhradp eelftkleri gkgsfgevfk gidnrtqqvv aikiidleea
       61 edeiediqqe itvlsqcdsp yvtkyygsyl kgtklwiime ylgggsaldl lragpfdefq
      121 iatmlkeilk gldylhsekk ihrdikaanv llseqgdvkl adfgvagqlt dtqikrntfv
      181 gtpfwmapev iqqsaydska diwslgitai elakgeppns dmhpmrvlfl ipknnpptll
      241 gefskpfkef idaclnkdpt frptakellk hkfimknakk tsyltelidr fkrwkaeghs
      301 sdesdsdgsd sessnkenns hpewsfttvr kkpdakklqn gtdqdlvktl scltmiitpv
      361 faelkqqdtn nasrkkaiee leksinmaea tcpgitdkmv kklmekfqkf svndss
//
LOCUS       XP_053931672             413 aa            linear   VRT 09-MAR-2023
DEFINITION  serine/threonine-protein kinase 26 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931672
VERSION     XP_053931672.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075697.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..413
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..413
                     /product="serine/threonine-protein kinase 26 isoform X2"
                     /calculated_mol_wt=46571
     Region          16..292
                     /region_name="STKc_MST4"
                     /note="Catalytic domain of the Serine/Threonine Kinase,
                     Mammalian Ste20-like protein kinase 4; cd06640"
                     /db_xref="CDD:132971"
     Site            order(27..31,35,48,50,80,96..99,102..103,106,141,143..146,
                     148,158..159,162,176..179,181,208,217)
                     /site_type="active"
                     /db_xref="CDD:132971"
     Site            order(27..31,35,48,50,67,80,96..99,102..103,106,145..146,
                     148,159)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:132971"
     Site            order(30..31,141,143..145,162,176..179,181,208,217)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:132971"
     Site            158..181
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:132971"
     CDS             1..413
                     /gene="STK26"
                     /coded_by="XM_054075697.1:16..1257"
                     /db_xref="GeneID:104063677"
ORIGIN      
        1 mlllnqrdfl snhradpeel ftklerigkg sfgevfkgid nrtqqvvaik iidleeaede
       61 iediqqeitv lsqcdspyvt kyygsylkgt klwiimeylg ggsaldllra gpfdefqiat
      121 mlkeilkgld ylhsekkihr dikaanvlls eqgdvkladf gvagqltdtq ikrntfvgtp
      181 fwmapeviqq saydskadiw slgitaiela kgeppnsdmh pmrvlflipk nnpptllgef
      241 skpfkefida clnkdptfrp takellkhkf imknakktsy ltelidrfkr wkaeghssde
      301 sdsdgsdses snkennshpe wsfttvrkkp dakklqngtd qdlvktlscl tmiitpvfae
      361 lkqqdtnnas rkkaieelek sinmaeatcp gitdkmvkkl mekfqkfsvn dss
//
LOCUS       XP_009553567             212 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related protein Rab-41 isoform X1 [Cuculus canorus].
ACCESSION   XP_009553567
VERSION     XP_009553567.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009555272.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..212
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..212
                     /product="ras-related protein Rab-41 isoform X1"
                     /calculated_mol_wt=23787
     Region          17..178
                     /region_name="Rab6"
                     /note="Rab GTPase family 6 (Rab6); cd01861"
                     /db_xref="CDD:206654"
     Site            17..18
                     /site_type="other"
                     /note="Rab subfamily motif 1 (RabSF1)"
                     /db_xref="CDD:206654"
     Site            23..30
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206654"
     Site            order(25..31,45,47,130..131,133,160..162)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206654"
     Site            order(31..42,46..47)
                     /site_type="other"
                     /note="Rab subfamily motif 2 (RabSF2)"
                     /db_xref="CDD:206654"
     Site            order(41,46..54)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206654"
     Site            order(46,50..57,64,67)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206654"
     Site            48
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206654"
     Site            order(49,51..53,69,71,78..79,82,86,88..91,178)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206654"
     Site            order(49..50,52,71..72,79,81,83..85)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206654"
     Site            49..53
                     /site_type="other"
                     /note="Rab family motif 1 (RabF1)"
                     /db_xref="CDD:206654"
     Site            67..71
                     /site_type="other"
                     /note="Rab family motif 2 (RabF2)"
                     /db_xref="CDD:206654"
     Site            72..75
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206654"
     Site            order(75,77..87)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206654"
     Site            78..83
                     /site_type="other"
                     /note="Rab family motif 3 (RabF3)"
                     /db_xref="CDD:206654"
     Site            86..90
                     /site_type="other"
                     /note="Rab family motif 4 (RabF4)"
                     /db_xref="CDD:206654"
     Site            95..100
                     /site_type="other"
                     /note="Rab family motif 5 (RabF5)"
                     /db_xref="CDD:206654"
     Site            123..127
                     /site_type="other"
                     /note="Rab subfamily motif 3 (RabSF3)"
                     /db_xref="CDD:206654"
     Site            130..133
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206654"
     Site            160..162
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206654"
     Site            176..178
                     /site_type="other"
                     /note="Rab subfamily motif 4 (RabSF4)"
                     /db_xref="CDD:206654"
     CDS             1..212
                     /gene="RAB41"
                     /coded_by="XM_009555272.2:104..742"
                     /db_xref="GeneID:104054296"
ORIGIN      
        1 msgpgsggef gnplrkfklv flgeqsvgkt slitrfmyds fdntyqatig idflsktmyl
       61 edrtqvrlql wdtagqerfr slipsyirds tiavvvydit nlnsfqqtsk widdvrterg
      121 sdviimlvgn ktdladkrqi tteegeqrak elnvmfiets aktgynvkql frrvaaalpg
      181 mdstpekske dmidiklekp peqpvtesgc sc
//
LOCUS       XP_009553568             211 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related protein Rab-41 isoform X2 [Cuculus canorus].
ACCESSION   XP_009553568
VERSION     XP_009553568.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009555273.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..211
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..211
                     /product="ras-related protein Rab-41 isoform X2"
                     /calculated_mol_wt=23659
     Region          17..177
                     /region_name="Rab6"
                     /note="Rab GTPase family 6 (Rab6); cd01861"
                     /db_xref="CDD:206654"
     Site            17..18
                     /site_type="other"
                     /note="Rab subfamily motif 1 (RabSF1)"
                     /db_xref="CDD:206654"
     Site            23..30
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206654"
     Site            order(25..31,45,47,129..130,132,159..161)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206654"
     Site            order(31..42,46..47)
                     /site_type="other"
                     /note="Rab subfamily motif 2 (RabSF2)"
                     /db_xref="CDD:206654"
     Site            order(41,46..54)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206654"
     Site            order(46,50..57,64,66)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206654"
     Site            48
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206654"
     Site            order(49,51..53,68,70,77..78,81,85,87..90,177)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206654"
     Site            order(49..50,52,70..71,78,80,82..84)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206654"
     Site            49..53
                     /site_type="other"
                     /note="Rab family motif 1 (RabF1)"
                     /db_xref="CDD:206654"
     Site            66..70
                     /site_type="other"
                     /note="Rab family motif 2 (RabF2)"
                     /db_xref="CDD:206654"
     Site            71..74
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206654"
     Site            order(74,76..86)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206654"
     Site            77..82
                     /site_type="other"
                     /note="Rab family motif 3 (RabF3)"
                     /db_xref="CDD:206654"
     Site            85..89
                     /site_type="other"
                     /note="Rab family motif 4 (RabF4)"
                     /db_xref="CDD:206654"
     Site            94..99
                     /site_type="other"
                     /note="Rab family motif 5 (RabF5)"
                     /db_xref="CDD:206654"
     Site            122..126
                     /site_type="other"
                     /note="Rab subfamily motif 3 (RabSF3)"
                     /db_xref="CDD:206654"
     Site            129..132
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206654"
     Site            159..161
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206654"
     Site            175..177
                     /site_type="other"
                     /note="Rab subfamily motif 4 (RabSF4)"
                     /db_xref="CDD:206654"
     CDS             1..211
                     /gene="RAB41"
                     /coded_by="XM_009555273.2:104..739"
                     /db_xref="GeneID:104054296"
ORIGIN      
        1 msgpgsggef gnplrkfklv flgeqsvgkt slitrfmyds fdntyqatig idflsktmyl
       61 edrtvrlqlw dtagqerfrs lipsyirdst iavvvyditn lnsfqqtskw iddvrtergs
      121 dviimlvgnk tdladkrqit teegeqrake lnvmfietsa ktgynvkqlf rrvaaalpgm
      181 dstpeksked midiklekpp eqpvtesgcs c
//
LOCUS       XP_009553569             211 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related protein Rab-41 isoform X3 [Cuculus canorus].
ACCESSION   XP_009553569
VERSION     XP_009553569.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009555274.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009553569.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..211
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..211
                     /product="ras-related protein Rab-41 isoform X3"
                     /calculated_mol_wt=23613
     Region          17..177
                     /region_name="Rab6"
                     /note="Rab GTPase family 6 (Rab6); cd01861"
                     /db_xref="CDD:206654"
     Site            17..18
                     /site_type="other"
                     /note="Rab subfamily motif 1 (RabSF1)"
                     /db_xref="CDD:206654"
     Site            23..30
                     /site_type="other"
                     /note="G1 box"
                     /db_xref="CDD:206654"
     Site            order(25..31,45,47,129..130,132,159..161)
                     /site_type="other"
                     /note="GTP/Mg2+ binding site [chemical binding]"
                     /db_xref="CDD:206654"
     Site            order(31..42,46..47)
                     /site_type="other"
                     /note="Rab subfamily motif 2 (RabSF2)"
                     /db_xref="CDD:206654"
     Site            order(41,46..54)
                     /site_type="other"
                     /note="Switch I region"
                     /db_xref="CDD:206654"
     Site            order(46,50..57,64,66)
                     /site_type="other"
                     /note="putative GEF interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206654"
     Site            48
                     /site_type="other"
                     /note="G2 box"
                     /db_xref="CDD:206654"
     Site            order(49,51..53,68,70,77..78,81,85,87..90,177)
                     /site_type="active"
                     /note="putative effector interaction site [active]"
                     /db_xref="CDD:206654"
     Site            order(49..50,52,70..71,78,80,82..84)
                     /site_type="other"
                     /note="putative GDI interaction site [polypeptide
                     binding]"
                     /db_xref="CDD:206654"
     Site            49..53
                     /site_type="other"
                     /note="Rab family motif 1 (RabF1)"
                     /db_xref="CDD:206654"
     Site            66..70
                     /site_type="other"
                     /note="Rab family motif 2 (RabF2)"
                     /db_xref="CDD:206654"
     Site            71..74
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206654"
     Site            order(74,76..86)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206654"
     Site            77..82
                     /site_type="other"
                     /note="Rab family motif 3 (RabF3)"
                     /db_xref="CDD:206654"
     Site            85..89
                     /site_type="other"
                     /note="Rab family motif 4 (RabF4)"
                     /db_xref="CDD:206654"
     Site            94..99
                     /site_type="other"
                     /note="Rab family motif 5 (RabF5)"
                     /db_xref="CDD:206654"
     Site            122..126
                     /site_type="other"
                     /note="Rab subfamily motif 3 (RabSF3)"
                     /db_xref="CDD:206654"
     Site            129..132
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206654"
     Site            159..161
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206654"
     Site            175..177
                     /site_type="other"
                     /note="Rab subfamily motif 4 (RabSF4)"
                     /db_xref="CDD:206654"
     CDS             1..211
                     /gene="RAB41"
                     /coded_by="XM_009555274.2:104..739"
                     /db_xref="GeneID:104054296"
ORIGIN      
        1 msgpgsggef gnplrkfklv flgeqsvgkt slitrfmyds fdntyqatig idflsktmyl
       61 edrtirlqlw dtagqerfrs lipsyirdsa vavivfdvtn lnsfqqtskw iddvrtergs
      121 dviimlvgnk tdladkrqit teegeqrake lnvmfietsa ktgynvkqlf rrvaaalpgm
      181 dstpeksked midiklekpp eqpvtesgcs c
//
LOCUS       XP_053931674             210 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related protein Rab-41 isoform X4 [Cuculus canorus].
ACCESSION   XP_053931674
VERSION     XP_053931674.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075699.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..210
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..210
                     /product="ras-related protein Rab-41 isoform X4"
                     /calculated_mol_wt=23326
     Region          <64..176
                     /region_name="Rab6"
                     /note="Rab GTPase family 6 (Rab6); cd01861"
                     /db_xref="CDD:206654"
     Site            65..69
                     /site_type="other"
                     /note="Rab family motif 2 (RabF2)"
                     /db_xref="CDD:206654"
     Site            70..73
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206654"
     Site            order(73,75..85)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206654"
     Site            76..81
                     /site_type="other"
                     /note="Rab family motif 3 (RabF3)"
                     /db_xref="CDD:206654"
     Site            84..88
                     /site_type="other"
                     /note="Rab family motif 4 (RabF4)"
                     /db_xref="CDD:206654"
     Site            93..98
                     /site_type="other"
                     /note="Rab family motif 5 (RabF5)"
                     /db_xref="CDD:206654"
     Site            121..125
                     /site_type="other"
                     /note="Rab subfamily motif 3 (RabSF3)"
                     /db_xref="CDD:206654"
     Site            128..131
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206654"
     Site            158..160
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206654"
     Site            174..176
                     /site_type="other"
                     /note="Rab subfamily motif 4 (RabSF4)"
                     /db_xref="CDD:206654"
     CDS             1..210
                     /gene="RAB41"
                     /coded_by="XM_054075699.1:174..806"
                     /db_xref="GeneID:104054296"
ORIGIN      
        1 mtalitltrr pleliscqkq cilriarsgc scgiqparrg saasfpatsv tllwlslslt
       61 lqqvrlqlwd tagqerfrsl ipsyirdsti avvvyditnl nsfqqtskwi ddvrtergsd
      121 viimlvgnkt dladkrqitt eegeqrakel nvmfietsak tgynvkqlfr rvaaalpgmd
      181 stpekskedm idiklekppe qpvtesgcsc
//
LOCUS       XP_053931675             209 aa            linear   VRT 09-MAR-2023
DEFINITION  ras-related protein Rab-41 isoform X5 [Cuculus canorus].
ACCESSION   XP_053931675
VERSION     XP_053931675.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075700.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..209
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..209
                     /product="ras-related protein Rab-41 isoform X5"
                     /calculated_mol_wt=23198
     Region          <63..175
                     /region_name="Rab6"
                     /note="Rab GTPase family 6 (Rab6); cd01861"
                     /db_xref="CDD:206654"
     Site            64..68
                     /site_type="other"
                     /note="Rab family motif 2 (RabF2)"
                     /db_xref="CDD:206654"
     Site            69..72
                     /site_type="other"
                     /note="G3 box"
                     /db_xref="CDD:206654"
     Site            order(72,74..84)
                     /site_type="other"
                     /note="Switch II region"
                     /db_xref="CDD:206654"
     Site            75..80
                     /site_type="other"
                     /note="Rab family motif 3 (RabF3)"
                     /db_xref="CDD:206654"
     Site            83..87
                     /site_type="other"
                     /note="Rab family motif 4 (RabF4)"
                     /db_xref="CDD:206654"
     Site            92..97
                     /site_type="other"
                     /note="Rab family motif 5 (RabF5)"
                     /db_xref="CDD:206654"
     Site            120..124
                     /site_type="other"
                     /note="Rab subfamily motif 3 (RabSF3)"
                     /db_xref="CDD:206654"
     Site            127..130
                     /site_type="other"
                     /note="G4 box"
                     /db_xref="CDD:206654"
     Site            157..159
                     /site_type="other"
                     /note="G5 box"
                     /db_xref="CDD:206654"
     Site            173..175
                     /site_type="other"
                     /note="Rab subfamily motif 4 (RabSF4)"
                     /db_xref="CDD:206654"
     CDS             1..209
                     /gene="RAB41"
                     /coded_by="XM_054075700.1:174..803"
                     /db_xref="GeneID:104054296"
ORIGIN      
        1 mtalitltrr pleliscqkq cilriarsgc scgiqparrg saasfpatsv tllwlslslt
       61 lqvrlqlwdt agqerfrsli psyirdstia vvvyditnln sfqqtskwid dvrtergsdv
      121 iimlvgnktd ladkrqitte egeqrakeln vmfietsakt gynvkqlfrr vaaalpgmds
      181 tpekskedmi diklekppeq pvtesgcsc
//
LOCUS       XP_053931676             141 aa            linear   VRT 09-MAR-2023
DEFINITION  NTF2-related export protein 2 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931676
VERSION     XP_053931676.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075701.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..141
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..141
                     /product="NTF2-related export protein 2 isoform X1"
                     /calculated_mol_wt=15998
     Region          13..138
                     /region_name="NTF2"
                     /note="Nuclear transport factor 2 (NTF2) domain plays an
                     important role in the trafficking of macromolecules, ions
                     and small molecules between the cytoplasm and nucleus.
                     This bi-directional transport of macromolecules across the
                     nuclear envelope requires many...; cd00780"
                     /db_xref="CDD:238403"
     Site            order(41,47,54,77,79..80,95,121,131..133,135,137)
                     /site_type="active"
                     /note="TAP/p15 interaction [active]"
                     /db_xref="CDD:238403"
     Site            order(45,47..48,74..75,77,79..80,93,97..99,103,105..108,
                     111,121,131..133,135..138)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:238403"
     Site            order(48..49,66,69,98,100,102..103,105,108,134,136,138)
                     /site_type="active"
                     /note="RanGDP-NTF2 interaction [active]"
                     /db_xref="CDD:238403"
     CDS             1..141
                     /gene="NXT2"
                     /coded_by="XM_054075701.1:57..482"
                     /db_xref="GeneID:104058363"
ORIGIN      
        1 maasvdfkty vdqacraade fvniyyetmd krrralsrly ldkatlvwng navsgqeeln
       61 kffemlpsse fqvnvldcqp vheqatqgqm tvlvvtsgtv kfdgdkqryf nqnflltaqa
      121 tpantvwkia sdcfrfqdwa s
//
LOCUS       XP_053931677             113 aa            linear   VRT 09-MAR-2023
DEFINITION  NTF2-related export protein 2 isoform X2 [Cuculus canorus].
ACCESSION   XP_053931677
VERSION     XP_053931677.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075702.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..113
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..113
                     /product="NTF2-related export protein 2 isoform X2"
                     /calculated_mol_wt=12794
     Region          1..110
                     /region_name="NTF2"
                     /note="Nuclear transport factor 2 (NTF2) domain plays an
                     important role in the trafficking of macromolecules, ions
                     and small molecules between the cytoplasm and nucleus.
                     This bi-directional transport of macromolecules across the
                     nuclear envelope requires many...; cd00780"
                     /db_xref="CDD:238403"
     Site            order(13,19,26,49,51..52,67,93,103..105,107,109)
                     /site_type="active"
                     /note="TAP/p15 interaction [active]"
                     /db_xref="CDD:238403"
     Site            order(17,19..20,46..47,49,51..52,65,69..71,75,77..80,83,
                     93,103..105,107..110)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:238403"
     Site            order(20..21,38,41,70,72,74..75,77,80,106,108,110)
                     /site_type="active"
                     /note="RanGDP-NTF2 interaction [active]"
                     /db_xref="CDD:238403"
     CDS             1..113
                     /gene="NXT2"
                     /coded_by="XM_054075702.1:91..432"
                     /db_xref="GeneID:104058363"
ORIGIN      
        1 mdkrrralsr lyldkatlvw ngnavsgqee lnkffemlps sefqvnvldc qpvheqatqg
       61 qmtvlvvtsg tvkfdgdkqr yfnqnfllta qatpantvwk iasdcfrfqd was
//
LOCUS       XP_053931678            1523 aa            linear   VRT 09-MAR-2023
DEFINITION  LOW QUALITY PROTEIN: neurite extension and migration factor
            [Cuculus canorus].
ACCESSION   XP_053931678
VERSION     XP_053931678.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075703.1
KEYWORDS    RefSeq; corrected model.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1523
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1523
                     /product="LOW QUALITY PROTEIN: neurite extension and
                     migration factor"
                     /calculated_mol_wt=167348
     Region          290..670
                     /region_name="DUF4683"
                     /note="Domain of unknown function (DUF4683); pfam15735"
                     /db_xref="CDD:464832"
     CDS             1..1523
                     /gene="NEXMIF"
                     /coded_by="XM_054075703.1:299..4870"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /db_xref="GeneID:104058429"
ORIGIN      
        1 mddqqeqdca sedqetilin gvkeneahpl dgnerpctta eatvtfsalt aaqkenhach
       61 ralppltskk pcllsppspl rltdapehas ddssahaisl tscvtkgmss wslpgdceka
      121 pftmmepggm saltgdclmq psrtclgcfi eskdgidaep gislkvgdin rdydtcsvsd
      181 igihcmstge tmrygdqlls dqllsfpmhk sraadkrdae ksdsdsedpt qknyyeglll
      241 dkcngeepll tnpnqewgyf esfiseskie lldlcsknel svnlfseedv dnymfdddds
      301 tlgsdvcslk iryesfqdnv rektttlqed aqfnffpsvf snctkrdsrs tlkrgpgsat
      361 dpsqfkseeg iiwgeeeedg eeeggeeeek aalnkscnst emvqyvsskr shfldsvnst
      421 edsgefsdds tctessydvl rdikdcsryl srdhsgsfiq qnyglrakrk vrysddylyd
      481 vdsienekil dkkewlpdgp keedddewcp kkrrkvsrke ppviikyiii nrfkgekhml
      541 vklskvdane ttvtlneell skyeklaplk gfwqerqqsr ldllrsslyh kqnfylngsd
      601 asflphprkr kcklanrhri qrikaieqsv nklgscssdh kqpcsskeda glkglpalai
      661 atpscanglh vsditgiaam kcksqerehk gterkvlrri kfksearlkc kkikaatstv
      721 edslalenqd savrlkdknv pcasdsshlp ehhedkvakn spflpstsss dkplpsanit
      781 tnvplipggy lqtlldasdl ssnasisyft qhpseqqqhp lpsivpaekp fpalqpaqsc
      841 vlsppsesel qqspghleme qssfgsmwpa skaagstrqd fpsempeaag lpsefgggss
      901 satgadglpa sgytqvnlns gkllyqknym pdsqqvqsdd syqschfnng eghfhfqrgt
      961 lstddgrlis fdsvgslsvs ssnysslslk scekdgeddi nddflahcsp klviqqside
     1021 itplkestdl ldisnftpdk frqsslsems ppdtpnlspq iagsdtkplg tlkgfqespq
     1081 palnssekvk wncgvlqtee qadngfalnn hqfqfhmfnd edsvslleks pclstfneps
     1141 gqistnskvs kskrkssssk nvgtnqsssq katrkkspkp nkgtdkpqgk nsrqapkstr
     1201 kgknavgvng ekapaiggrv vnqlsnaatt tkglaestqh cspagvklgk hnglsgdwal
     1261 gkergvgwse aslgnatsll dddqrefeep snilsniasg madvqrfmma sieplwgpvg
     1321 hnsvpdifrs pesnslklkt lkilagttqe skkkangssa aaaknhksnn kgsnkngkaa
     1381 tcdparpncs tgyspdvhpp ffdknysnls tlgnngpthk klyrhksssk slrdenckik
     1441 rtereqphkd ppvtdafekl resdsillka etaflvxpvf eeetpfsrkt vdvcffsfff
     1501 frlgffpsvp fcnlpcamlt ckc
//
LOCUS       XP_009567128             414 aa            linear   VRT 09-MAR-2023
DEFINITION  transcription factor SOX-3 [Cuculus canorus].
ACCESSION   XP_009567128
VERSION     XP_009567128.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568833.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567128.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..414
                     /product="transcription factor SOX-3"
                     /calculated_mol_wt=43896
     Region          144..219
                     /region_name="HMG-box_SoxB"
                     /note="high mobility group (HMG)-box found in group B
                     SRY-related high-mobility group (HMG) box (Sox)
                     transcription factors; cd01388"
                     /db_xref="CDD:438790"
     Site            order(145,147..148,150..154,158,161..162,169..174,
                     177..178,181,184..185,192,203,215..219)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:438790"
     Region          215..295
                     /region_name="SOXp"
                     /note="SOX transcription factor; pfam12336"
                     /db_xref="CDD:463537"
     CDS             1..414
                     /gene="LOC104066255"
                     /coded_by="XM_009568833.2:244..1488"
                     /db_xref="GeneID:104066255"
ORIGIN      
        1 mppglvrasl gaargtrsap lsrrarsstt sgsgasahra eklppaaaak agsflsflfl
       61 ffvclfgfvf flfltsfpra gaclpaalah llpapamysm leteiktpqp tpgsaggtpa
      121 pgsngkgagg ggagggagag sdqdrvkrpm nafmvwsrgq rrkmaqenpk mhnseiskrl
      181 gadwkllsda ekrpfideak rlravhmkey pdykyrprrk tktllkkdky slpgnllapg
      241 ggnavsspvg vgqridtyah mngwtngays lmqdqlgysq hpgmnspqlq qmhrydmtgl
      301 qyspmmstaq tymnaastys mspaaygqqp stamslgsmg svvksepssp ppaitshsqr
      361 aclgdlrdmi smylppggda tdpsslqgsr lhsvhqhyqs agtgvngtvp lthi
//
LOCUS       XP_053931679             701 aa            linear   VRT 09-MAR-2023
DEFINITION  myotubularin-related protein 8 isoform X1 [Cuculus canorus].
ACCESSION   XP_053931679
VERSION     XP_053931679.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075704.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..701
                     /product="myotubularin-related protein 8 isoform X1"
                     /calculated_mol_wt=78962
     Region          8..110
                     /region_name="PH-GRAM_MTMR8"
                     /note="Myotubularian (MTM) related 8 protein (MTMR8)
                     Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase
                     activators and Myotubularins (PH-GRAM) domain; cd13345"
                     /db_xref="CDD:270153"
     Region          133..440
                     /region_name="PTP-MTMR8"
                     /note="protein tyrosine phosphatase-like domain of
                     myotubularin related phosphoinositide phosphatase 8;
                     cd14584"
                     /db_xref="CDD:350432"
     Site            order(297,302..305,307..308,312,317)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:350432"
     CDS             1..701
                     /gene="LOC104066244"
                     /coded_by="XM_054075704.1:99..2204"
                     /db_xref="GeneID:104066244"
ORIGIN      
        1 mspgvaameh ivtpkvenvk lldryanrks angtlyltat hliyvdasae vrkeiwilhh
       61 hiaaveklpl ttagypllih cknfhvahfv igqerdchdv ytsllklsqp vkaeelyafs
      121 ynpktskenr eigwklidlk vdyqrmgipn dyweitdvnk dyevcntypp eivvpraank
      181 avvigssrfr srgripvlsy lykennaaic rcsqplsgfs arcledeqml qaireanpgs
      241 pfmyvvdtrp klnamanraa gkgyenedny dnicfkfigi enihvmrnsl qkllevcemk
      301 spsmsdfltg lensgwlrhi kavmdagvfl akavkdekas vlvhcsdgwd rtaqvcslas
      361 llldpfyrtf kgfmvlieke wiamghkfsh rcghlngdpk evspvftqfi ecvwqlmqqf
      421 pcsfefndrf lleihdhvys cqfgnflgtc hkeredlkif ekthslwpfl lqkrqdlrnp
      481 lyrgftayqd lqpntlpfsf qfwcgmynrf dkgmhpkqcv ldrllscmsq kvklednase
      541 lenckpplvr leaipscsvt cywgeepsth lastsflgpa esgevslsll ftrinspktl
      601 ssssvclkqk lpfldgplpg escslskags aaktpmlntp qgyegepspv lsngatagdg
      661 dvvsavdqkh kenmsqhqdl cnlnatigvl dpnaqdrkaq h
//
LOCUS       XP_009567117             635 aa            linear   VRT 09-MAR-2023
DEFINITION  myotubularin-related protein 8 isoform X2 [Cuculus canorus].
ACCESSION   XP_009567117
VERSION     XP_009567117.2
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_009568822.2
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 9, 2023 this sequence version replaced XP_009567117.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..635
                     /product="myotubularin-related protein 8 isoform X2"
                     /calculated_mol_wt=71938
     Region          8..110
                     /region_name="PH-GRAM_MTMR8"
                     /note="Myotubularian (MTM) related 8 protein (MTMR8)
                     Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase
                     activators and Myotubularins (PH-GRAM) domain; cd13345"
                     /db_xref="CDD:270153"
     Region          133..440
                     /region_name="PTP-MTMR8"
                     /note="protein tyrosine phosphatase-like domain of
                     myotubularin related phosphoinositide phosphatase 8;
                     cd14584"
                     /db_xref="CDD:350432"
     Site            order(297,302..305,307..308,312,317)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:350432"
     CDS             1..635
                     /gene="LOC104066244"
                     /coded_by="XM_009568822.2:99..2006"
                     /db_xref="GeneID:104066244"
ORIGIN      
        1 mspgvaameh ivtpkvenvk lldryanrks angtlyltat hliyvdasae vrkeiwilhh
       61 hiaaveklpl ttagypllih cknfhvahfv igqerdchdv ytsllklsqp vkaeelyafs
      121 ynpktskenr eigwklidlk vdyqrmgipn dyweitdvnk dyevcntypp eivvpraank
      181 avvigssrfr srgripvlsy lykennaaic rcsqplsgfs arcledeqml qaireanpgs
      241 pfmyvvdtrp klnamanraa gkgyenedny dnicfkfigi enihvmrnsl qkllevcemk
      301 spsmsdfltg lensgwlrhi kavmdagvfl akavkdekas vlvhcsdgwd rtaqvcslas
      361 llldpfyrtf kgfmvlieke wiamghkfsh rcghlngdpk evspvftqfi ecvwqlmqqf
      421 pcsfefndrf lleihdhvys cqfgnflgtc hkeredlkif ekthslwpfl lqkrqdlrnp
      481 lyrgftayqd lqpntlpfsf qfwcgmynrf dkgmhpkqcv ldrllscmsq kvklednase
      541 lenklpfldg plpgescsls kagsaaktpm lntpqgyege pspvlsngat agdgdvvsav
      601 dqkhkenmsq hqdlcnlnat igvldpnaqd rkaqh
//
LOCUS       XP_053931680             556 aa            linear   VRT 09-MAR-2023
DEFINITION  myotubularin-related protein 8 isoform X3 [Cuculus canorus].
ACCESSION   XP_053931680
VERSION     XP_053931680.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075705.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..556
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..556
                     /product="myotubularin-related protein 8 isoform X3"
                     /calculated_mol_wt=62385
     Region          1..295
                     /region_name="PTP_DSP_cys"
                     /note="cys-based protein tyrosine phosphatase and
                     dual-specificity phosphatase superfamily; cl28904"
                     /db_xref="CDD:475123"
     CDS             1..556
                     /gene="LOC104066244"
                     /coded_by="XM_054075705.1:464..2134"
                     /db_xref="GeneID:104066244"
ORIGIN      
        1 mgipndywei tdvnkdyevc ntyppeivvp raankavvig ssrfrsrgri pvlsylyken
       61 naaicrcsqp lsgfsarcle deqmlqaire anpgspfmyv vdtrpklnam anraagkgye
      121 nednydnicf kfigienihv mrnslqklle vcemkspsms dfltglensg wlrhikavmd
      181 agvflakavk dekasvlvhc sdgwdrtaqv cslasllldp fyrtfkgfmv liekewiamg
      241 hkfshrcghl ngdpkevspv ftqfiecvwq lmqqfpcsfe fndrflleih dhvyscqfgn
      301 flgtchkere dlkifekths lwpfllqkrq dlrnplyrgf tayqdlqpnt lpfsfqfwcg
      361 mynrfdkgmh pkqcvldrll scmsqkvkle dnaselenck pplvrleaip scsvtcywge
      421 epsthlasts flgpaesgev slsllftrin spktlssssv clkqklpfld gplpgescsl
      481 skagsaaktp mlntpqgyeg epspvlsnga tagdgdvvsa vdqkhkenms qhqdlcnlna
      541 tigvldpnaq drkaqh
//
LOCUS       XP_053931681             363 aa            linear   VRT 09-MAR-2023
DEFINITION  POU domain, class 3, transcription factor 4 [Cuculus canorus].
ACCESSION   XP_053931681
VERSION     XP_053931681.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075706.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..363
                     /product="POU domain, class 3, transcription factor 4"
                     /calculated_mol_wt=38686
     Region          188..262
                     /region_name="POU"
                     /note="Found in Pit-Oct-Unc transcription factors;
                     smart00352"
                     /db_xref="CDD:197673"
     Region          281..337
                     /region_name="Homeodomain"
                     /note="pfam00046"
                     /db_xref="CDD:459649"
     CDS             1..363
                     /gene="POU3F4"
                     /coded_by="XM_054075706.1:83..1174"
                     /db_xref="GeneID:128853165"
ORIGIN      
        1 mataasnpys llgsgslaha dgagmqqgsp frnpqkllqs eylqgvpgng hplghhwvts
       61 lsdggawpsa leqpdvkpgr edlqlgallh hrsphvahhs phanhpgawg aspahgaslp
      121 paagqplsvy sqagfavggm lehggitppp ataaaaaaaq glhpglrgep ggehgelggh
      181 hcqdhsdeet ptsdeleqfa kqfkqrrikl gftqadvgla lgtlygnvfs qtticrfeal
      241 qlsfknmckl kpllnkwlee adsstgspts idkiaaqgrk rkkrtsievs vkgvlethfl
      301 kcpkpaaqei ssladslqle kevvrvwfcn rrqkekrmtp pgeqpqhevy shgvktdtac
      361 hdl
//
LOCUS       XP_053931683            1559 aa            linear   VRT 09-MAR-2023
DEFINITION  BCL-6 corepressor-like protein 1 [Cuculus canorus].
ACCESSION   XP_053931683
VERSION     XP_053931683.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075708.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1559
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..1559
                     /product="BCL-6 corepressor-like protein 1"
                     /calculated_mol_wt=168546
     Region          20..>479
                     /region_name="PHA03307"
                     /note="transcriptional regulator ICP4; Provisional"
                     /db_xref="CDD:223039"
     Region          <322..755
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          <1271..>1380
                     /region_name="ANKYR"
                     /note="Ankyrin repeat [Signal transduction mechanisms];
                     COG0666"
                     /db_xref="CDD:440430"
     Region          1273..1304
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Site            order(1274,1278..1279,1282..1284,1286..1287,1291,1295,
                     1304,1306,1308,1312..1313,1316..1318,1320..1321,1325,1328,
                     1337,1339,1341,1345..1346,1349..1351,1353..1354,1358,1361)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:293786"
     Region          1306..1337
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          1339..1368
                     /region_name="ANK repeat"
                     /note="ANK repeat [structural motif]"
                     /db_xref="CDD:293786"
     Region          1443..1558
                     /region_name="PUFD"
                     /note="BCORL-PCGF1-binding domain; pfam16553"
                     /db_xref="CDD:465171"
     Site            order(1444,1446..1456,1458,1460,1469..1471,1473,
                     1514..1515,1517,1520,1540,1551,1553)
                     /site_type="other"
                     /note="RAWUL domain interface [polypeptide binding]"
                     /db_xref="CDD:271223"
     CDS             1..1559
                     /gene="BCORL1"
                     /coded_by="XM_054075708.1:189..4868"
                     /db_xref="GeneID:104060510"
ORIGIN      
        1 mistaplysg vhnwtsteri rmcglneerr aplsdeeskt sssqhlgsqe fcvssslskv
       61 eltavsgggs saqgleadgk veeklgprle eqppdpnpnp ecagktvkdd algalasqad
      121 grgqepavpr aaeqessgad aawtpadphs skeadpppac svasesepag kektapsaga
      181 qgpgvlaegt lavvvsscnt sastpatftl nrvcfptsqa aamqkmplsf qpgavlspsq
      241 slvyipppsc gqplsvatlp atlgvsstlt lpvlpsylhe rclpgiiasp elrsypytfs
      301 vtrplasdak vvsvevnqls cpspsggnsa qaaaegapps ttgsslsssq splaapagna
      361 apssgistha rapaapelha pgataslspl ksppqlerem isspecsemp ldlssksnrq
      421 klpppsqrkt ppmpiltpvh tsgkallttv lsksqraaqt tgssvtsclg ttpplvifpe
      481 flrngeqgsw vknttlisti pgtyvgvanp vpaslllskd pgvsfsrdpr hlpkqepisi
      541 idqgeprsae vpcgkkanqv saegqqdpar rllhgraatg aplcqskdvs twnpgqgsvy
      601 prcpvngkps npqllplgws pyhqtpllsi gisttgqlpp nqnssckpag adelptflsv
      661 qpiesstatq slpeglpklp pqereataks kscralpkly eepanpvsdg gptlqtsald
      721 rkggkgklds pqksqecdqa gsdsskegsv qteapqgscs lkqldakpkn qvlaaylshe
      781 lpavgqqslc vvsevptvpa esqhkepgck gsqeppaadp lqcvrqvdlc rvkkeqvecd
      841 vsftsvtclr agaapqgyae tklkgagqik qegsvrcksk rqhdgeakqa pkrlkcqaqd
      901 gedspsksgs qnvhgrkwrk hhdnphevgk regrtnlgsv kdhnslrvkr krrrpaktei
      961 sspahrgdsh eegylekkpk nnfrdfipvv lssrtrsqsg siagssagvt gecdvtsqdi
     1021 lplleedqee eeeeeeeetl lkrrklrksh rtsryhsrra rdksvserss cytrrtrelp
     1081 wrvesprqlw epneeeddds hikrkkrrrq ksrkyqtgey ltereeervg yphrrrkska
     1141 dfryrkqkes tqdkgtelrl rskvspsprk sqgrsdfrng fflehsdssp vqeelekpsg
     1201 krkcktkhla gicderkgkg ccnqpkthpl kksqdlwtlc kshraspgss pelpvaqnvp
     1261 pgarrlivnk nagetllqra arlgykdvvl yclqkkssdv nhrdnagyta lheacargwi
     1321 dilhillehg anvncsaqdg trpvhdavan dnletmwill sygadptlat ysgqtavkla
     1381 tsevmkrflc dylldlqgrt dgdprtawdf ysssvlegkd sigcdlllnp pgssdqeeee
     1441 qeadnfmfef sdkpllpsyn lqvsvsrgpc nwflfsdvlk rlklssrifq arfphfeiat
     1501 lptaefqrqv slsqvlaqee vpqspepapg aaetvelvhy epellqllgs aveyeawss
//
LOCUS       XP_053931684             343 aa            linear   VRT 09-MAR-2023
DEFINITION  40-kDa huntingtin-associated protein-like [Cuculus canorus].
ACCESSION   XP_053931684
VERSION     XP_053931684.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075709.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..343
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..343
                     /product="40-kDa huntingtin-associated protein-like"
                     /calculated_mol_wt=35176
     CDS             1..343
                     /gene="LOC128853166"
                     /coded_by="XM_054075709.1:89..1120"
                     /db_xref="GeneID:128853166"
ORIGIN      
        1 mlssaggsgt gpggagasgt glggdggdfl sryrlvsakl rrrflrkpnv aeaaeqfaal
       61 arelraqesl pyaawcqlav arcaqslfhg paeaaalaea arlflrqerd lrqrlalrgg
      121 fgehvaaaqs cgafaarlhl ergqpapaag pclelaaalr dtgrparaaa plqraaella
      181 aarlplealr cqaerascll lgrdyagala altraqalag agaaggacpe llarcevsrv
      241 llllllqppp aklppehart lerycwggsg agpgpgggag aaggplppel flllqsavla
      301 cqekdaralr alqaelwpll gaeqnhllhl vlqetlapag qgl
//
LOCUS       XP_053931685             409 aa            linear   VRT 09-MAR-2023
DEFINITION  interleukin-13 receptor subunit alpha-1 [Cuculus canorus].
ACCESSION   XP_053931685
VERSION     XP_053931685.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075710.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..409
                     /product="interleukin-13 receptor subunit alpha-1"
                     /calculated_mol_wt=46441
     Region          18..115
                     /region_name="Il13Ra_Ig"
                     /note="Interleukin-13 receptor subunit alpha Ig-like
                     domain; pfam18001"
                     /db_xref="CDD:465611"
     Region          121..205
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cl21522"
                     /db_xref="CDD:473895"
     Region          217..309
                     /region_name="FN3"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; cd00063"
                     /db_xref="CDD:238020"
     Site            order(217,278,299)
                     /site_type="active"
                     /note="Interdomain contacts [active]"
                     /db_xref="CDD:238020"
     Site            order(300..301,303..304)
                     /site_type="active"
                     /note="Cytokine receptor motif [active]"
                     /db_xref="CDD:238020"
     CDS             1..409
                     /gene="IL13RA1"
                     /coded_by="XM_054075710.1:66..1295"
                     /db_xref="GeneID:104063685"
ORIGIN      
        1 magaalllal cwaaegkvlp ppsnldysfi qictlnwtws ppenvsrscd leyssdivid
       61 evpqdkrews ksrfrvtdtf sneemrfrvr seckydnase psrwvetslr pkgipgtaav
      121 dlsciwhnle ymactwrpge kassdtnytl fywfnglknh kkcnnssmhq gvfgcafnfs
      181 fpevtstypa irilvkddse eirplcaskn pttlvkpatp rqvtlsksnd eihvgwsesd
      241 tfpenclfye vvyhngdkdt aqkikvesny tsipsidpns kyvfkvrakp kpecysskly
      301 sdwseeksig ekmdstfyfv liitipliva istiillvyl krlkililpp vpdpreivkr
      361 mfgeqnedsq scakddsvsa ydrsvkeeei hslvitetpe canaekqnc
//
LOCUS       XP_053931686             308 aa            linear   VRT 09-MAR-2023
DEFINITION  syntaxin-1B-like [Cuculus canorus].
ACCESSION   XP_053931686
VERSION     XP_053931686.1
DBLINK      BioProject: PRJNA939222
DBSOURCE    REFSEQ: accession XM_054075711.1
KEYWORDS    RefSeq.
SOURCE      Cuculus canorus (common cuckoo)
  ORGANISM  Cuculus canorus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae;
            Cuculiformes; Cuculidae; Cuculus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_071410) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_017976375.1-RS_2023_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/28/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..308
                     /organism="Cuculus canorus"
                     /isolate="bCucCan1"
                     /db_xref="taxon:55661"
                     /chromosome="10"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="Czech Republic: Hodonin"
                     /lat_lon="48.8557750 N 17.0677347 E"
                     /collection_date="2018-05-08"
                     /collected_by="Michal Sulc"
     Protein         1..308
                     /product="syntaxin-1B-like"
                     /calculated_mol_wt=34403
     Region          66..282
                     /region_name="COG5074"
                     /note="t-SNARE complex subunit, syntaxin [Intracellular
                     trafficking, secretion, and vesicular transport]"
                     /db_xref="CDD:227406"
     Region          211..273
                     /region_name="SNARE"
               
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